BLCA	TCGA-CU-A0YR-01	CDADC1	ENST00000251108.6	chr13	49829974:49830049:49833481:49833659:49840014:49840046,49829974:49830049:49833481:49833659:49841625:49841661,	49833482	49833659	49833659	49833660	Splice_Site	-	GTAA	p.A144fs
BLCA	TCGA-CU-A0YR-01	CDADC1	ENST00000466868.1	chr13	49829974:49830049:49833621:49833659:49840014:49840046,49829974:49830049:49833621:49833659:49841625:49841661,	49833622	49833659	49833659	49833660	Splice_Site	-	GTAA	p.A144fs
BLCA	TCGA-DK-A1A6-06	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44948987:44949175:44949967:44950109:44966654:44966781,	44949968	44950109	44950105	44950111	Splice_Site	ATTAAGT	-	p.IK1292fs
BLCA	TCGA-DK-A1A6-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44948987:44949175:44949967:44950109:44966654:44966781,	44949968	44950109	44950105	44950111	Splice_Site	ATTAAGT	-	p.IK1292fs
BLCA	TCGA-E5-A2PC-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000367284.5	chr1	201982309:201982426:201982956:201983152:201984336:201984922,	201982957	201983152	201983137	201983153	Splice_Site	TGAGCCGGGCCATGAGG	-	p.LSRAMR329fs
BLCA	TCGA-GU-AATP-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981563	201981565	Splice_Site	TGG	-	p.159_160FG>L
BLCA	TCGA-XF-A9SW-01	PPIG	ENST00000417938.2,ENST00000260970.3,ENST00000530152.1,ENST00000433207.1,ENST00000462903.1,ENST00000414307.1,ENST00000448752.2	chr2	170462612:170462656:170463613:170463658:170465180:170465268,	170463614	170463658	170463658	170463659	Splice_Site	-	GTA	p.96_97insV
BLCA	TCGA-ZF-A9R4-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981563	201981565	Splice_Site	TGG	-	p.159_160FG>L
BLCA	TCGA-BL-A0C8-01	TCP11L2	ENST00000546625.1,ENST00000553098.1,ENST00000299045.3,ENST00000547153.1	chr12	106708135:106708271:106712121:106712242:106715263:106715484,	106712122	106712242	106712243	106712243	Splice_Site	G	A	p.E138_splice
BLCA	TCGA-BL-A0C8-01	COL1A2	ENST00000497316.1,ENST00000461525.1,ENST00000473573.1,ENST00000297268.6	chr7	94047083:94047143:94047810:94047864:94048809:94048863,	94047811	94047864	94047865	94047865	Splice_Site	G	A	p.R675_splice
BLCA	TCGA-BL-A13J-01	NUDT14	ENST00000392568.2,ENST00000551024.1,ENST00000339418.5	chr14	105643299:105643364:105644028:105644072:105647465:105647580,	105644029	105644072	105644073	105644073	Splice_Site	C	T	p.N28_splice
BLCA	TCGA-BL-A3JM-01	IL10RA	ENST00000526544.1,ENST00000530761.1,ENST00000529924.1,ENST00000534574.1,ENST00000533700.1,ENST00000530178.1,ENST00000545409.1,ENST00000541785.1,ENST00000227752.3	chr11	117864713:117864864:117866303:117866425:117869429:117869660,	117866304	117866425	117866303	117866303	Splice_Site	G	T	p.Y230_splice
BLCA	TCGA-BL-A3JM-01	GPR108	ENST00000597706.1,ENST00000594500.1,ENST00000595908.1,ENST00000264080.7,ENST00000598626.1,ENST00000598955.1,ENST00000594034.1,ENST00000430424.4	chr19	6731483:6731533:6731901:6731945:6732035:6732065,	6731902	6731945	6731901	6731901	Splice_Site	C	T	p.V434_splice
BLCA	TCGA-BT-A0YX-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3,ENST00000491632.1,ENST00000444620.1	chr1	235344899:235346108:235357327:235357526:235359345:235359430,	235357328	235357526	235357527	235357527	Splice_Site	C	G	p.N643_splice
BLCA	TCGA-BT-A0YX-01	GOLIM4	ENST00000309027.4	chr3	167754623:167754782:167759179:167759262:167761166:167761317,	167759180	167759262	167759263	167759263	Splice_Site	C	G	p.E173_splice
BLCA	TCGA-BT-A20J-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000334686.6,ENST00000494598.1	chr3	155222343:155222415:155232511:155232673:155241685:155241793,	155232512	155232673	155232674	155232674	Splice_Site	C	G	p.S479_splice
BLCA	TCGA-BT-A20Q-01	VPS8	ENST00000422105.1,ENST00000436792.2,ENST00000446204.2,ENST00000469479.1	chr3	184556501:184556534:184557485:184557540:184566858:184566983,	184557486	184557540	184557485	184557485	Splice_Site	G	A	p.A161_splice
BLCA	TCGA-BT-A20W-01	MPZ	ENST00000491222.2,ENST00000336559.4,ENST00000533357.1,ENST00000360451.6,ENST00000463290.1	chr1	161276118:161276254:161276497:161276711:161277047:161277214,	161276498	161276711	161276712	161276712	Splice_Site	C	A	p.I89_splice
BLCA	TCGA-BT-A2LB-01	BIN1	ENST00000351659.3,ENST00000348750.4,ENST00000409400.1,ENST00000259238.4,ENST00000357970.3,ENST00000316724.5,ENST00000393040.3,ENST00000393041.3,ENST00000352848.3,ENST00000346226.3	chr2	127828337:127828392:127834201:127834282:127864435:127864577,	127834202	127834282	127834283	127834283	Splice_Site	C	T	p.V29_splice
BLCA	TCGA-BT-A2LB-01	SP110	ENST00000258381.6	chr2	231033843:231033953:231035336:231035477:231036781:231036863,231033843:231033953:231035336:231035477:231036411:231036483,	231035337	231035477	231035336	231035336	Splice_Site	C	T	p.K652_splice
BLCA	TCGA-BT-A2LB-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4816925:4817126:4818947:4819058:4821233:4821329,	4818948	4819058	4818947	4818947	Splice_Site	G	A	p.N2013_splice
BLCA	TCGA-BT-A2LB-01	ITIH1	ENST00000480409.1,ENST00000273283.2	chr3	52811610:52811748:52812012:52812033:52812355:52812522,	52812013	52812033	52812034	52812034	Splice_Site	G	T	p.T46_splice
BLCA	TCGA-BT-A2LB-01	CHD1	ENST00000512844.1	chr5	98194667:98194719:98195675:98195772:98199111:98199290,98194667:98194719:98195675:98195772:98204198:98204243,	98195676	98195772	98195774	98195774	Splice_Site	T	C	p.K1476_splice
BLCA	TCGA-BT-A2LB-01	TMED4	ENST00000457408.2	chr7	44617492:44619227:44620691:44620838:44621047:44621155,	44620692	44620838	44620691	44620691	Splice_Site	C	T	p.R178_splice
BLCA	TCGA-BT-A3PJ-01	LRIG1	ENST00000273261.3,ENST00000496559.2	chr3	66448535:66448607:66449393:66449465:66455621:66455702,	66449394	66449465	66449393	66449393	Splice_Site	C	T	p.L411_splice
BLCA	TCGA-BT-A3PJ-01	TRAM1	ENST00000262213.2,ENST00000520700.1,ENST00000521425.1,ENST00000518678.1,ENST00000536748.1	chr8	71510129:71510246:71510368:71510490:71512253:71512317,	71510369	71510490	71510491	71510491	Splice_Site	C	T	p.E63_splice
BLCA	TCGA-BT-A3PK-01	RAB11A	ENST00000564910.1,ENST00000567671.1,ENST00000261890.2	chr15	66170149:66170293:66172008:66172089:66180038:66180074,	66172009	66172089	66172008	66172008	Splice_Site	G	A	p.E144_splice
BLCA	TCGA-BT-A3PK-01	GPC2	ENST00000480087.1,ENST00000471050.1,ENST00000292377.2,ENST00000490629.1	chr7	99769812:99769840:99771457:99771620:99772307:99772347,	99771458	99771620	99771457	99771457	Splice_Site	C	A	p.D298_splice
BLCA	TCGA-BT-A42C-01	BUB1	ENST00000535254.1,ENST00000302759.6	chr2	111398610:111398782:111398883:111399041:111399218:111399266,	111398884	111399041	111399043	111399043	Splice_Site	T	C	p.N876_splice
BLCA	TCGA-C4-A0F6-01	SSH3	ENST00000532881.1,ENST00000529224.1,ENST00000376757.5,ENST00000308127.4,ENST00000532181.1,ENST00000527821.1	chr11	67075316:67075410:67075644:67075773:67075882:67075929,	67075645	67075773	67075644	67075644	Splice_Site	G	T	p.I296_splice
BLCA	TCGA-C4-A0F6-01	CUX2	ENST00000397643.3,ENST00000261726.6,ENST00000551604.2	chr12	111652104:111652114:111655693:111655741:111701564:111701643,	111655694	111655741	111655742	111655742	Splice_Site	G	T	p.E74_splice
BLCA	TCGA-C4-A0F7-01	KIF21B	ENST00000461742.2,ENST00000332129.2,ENST00000422435.2,ENST00000360529.5	chr1	200967511:200967703:200968476:200968594:200969010:200969092,	200968477	200968594	200968596	200968596	Splice_Site	T	C	p.E590_splice
BLCA	TCGA-CF-A1HR-01	ALOX5	ENST00000374391.2,ENST00000542434.1	chr10	45891302:45891384:45907638:45907761:45919488:45919595,	45907639	45907761	45907638	45907638	Splice_Site	G	A	p.R144_splice
BLCA	TCGA-CF-A1HR-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000307138.6	chr14	36225998:36226114:36230034:36230212:36231915:36231959,	36230035	36230212	36230213	36230213	Splice_Site	C	A	p.I124_splice
BLCA	TCGA-CF-A1HR-01	PDIA5	ENST00000489923.1,ENST00000316218.7,ENST00000484644.1,ENST00000495004.1	chr3	122808014:122808141:122811201:122811289:122821257:122821341,	122811202	122811289	122811201	122811201	Splice_Site	G	A	p.E57_splice
BLCA	TCGA-CF-A1HR-01	OGN	ENST00000447356.1,ENST00000262551.4,ENST00000375561.5	chr9	95152135:95152338:95155367:95155526:95163373:95163467,	95155368	95155526	95155527	95155527	Splice_Site	C	T	p.E90_splice
BLCA	TCGA-CF-A1HS-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70785230:70785509:70786810:70786958:70791076:70791235,	70786811	70786958	70786810	70786810	Splice_Site	G	C	p.N498_splice
BLCA	TCGA-CF-A27C-01	PSIP1	ENST00000380738.4,ENST00000380733.4	chr9	15466745:15466857:15468627:15468841:15468954:15469056,	15468628	15468841	15468842	15468842	Splice_Site	C	G	p.I403_splice
BLCA	TCGA-CF-A3MG-01	PGLYRP4	ENST00000359650.5,ENST00000368739.3	chr1	153303230:153303421:153309656:153309775:153312856:153313055,	153309657	153309775	153309655	153309655	Splice_Site	A	G	p.G315_splice
BLCA	TCGA-CU-A0YN-01	ELMO2	ENST00000290246.6,ENST00000396391.1,ENST00000439931.2,ENST00000352077.2,ENST00000450812.1,ENST00000445496.2,ENST00000488853.1,ENST00000462593.1,ENST00000469801.1,ENST00000487583.1	chr20	45021731:45021782:45022167:45022240:45022687:45022728,	45022168	45022240	45022241	45022241	Splice_Site	C	T	p.G40_splice
BLCA	TCGA-CU-A0YO-01	GINS1	ENST00000262460.4	chr20	25400319:25400441:25405846:25405963:25422337:25422412,25398740:25398831:25405846:25405963:25422337:25422412,	25405847	25405963	25405846	25405846	Splice_Site	G	A	p.M111_splice
BLCA	TCGA-CU-A0YR-01	NME4	ENST00000397722.1,ENST00000219479.2,ENST00000460297.1,ENST00000448828.1,ENST00000444498.1,ENST00000433358.1,ENST00000450036.1,ENST00000382940.4	chr16	448992:449123:449378:449480:449626:449739,	449379	449480	449378	449378	Splice_Site	G	A	p.A76_splice
BLCA	TCGA-CU-A3KJ-01	PUM1	ENST00000257075.5,ENST00000373741.4,ENST00000440538.2,ENST00000480602.1,ENST00000426105.2,ENST00000525843.1,ENST00000373747.3,ENST00000525948.1	chr1	31468028:31468067:31478699:31478878:31479840:31479946,	31478700	31478878	31478699	31478699	Splice_Site	C	T	p.F240_splice
BLCA	TCGA-CU-A3YL-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000523471.1,ENST00000544260.1,ENST00000381869.3,ENST00000262102.6,ENST00000381861.3,ENST00000517413.1	chr8	17504512:17504588:17507354:17507471:17510694:17510787,	17507355	17507471	17507472	17507472	Splice_Site	C	T	p.K1129_splice
BLCA	TCGA-DK-A1A3-01	MIER1	ENST00000355356.3,ENST00000401041.1,ENST00000401042.3,ENST00000371018.3,ENST00000357692.2,ENST00000371016.1,ENST00000371014.1	chr1	67405710:67405735:67411832:67411978:67423741:67423903,	67411833	67411978	67411832	67411833	Splice_Site	GG	TT	p.G65_splice
BLCA	TCGA-DK-A1A3-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116636077:116636162:116640844:116640938:116643537:116643703,	116640845	116640938	116640940	116640940	Splice_Site	T	C	p.G48_splice
BLCA	TCGA-DK-A1A3-01	EEF2	ENST00000309311.6	chr19	3983251:3983289:3984133:3984348:3985375:3985461,	3984134	3984348	3984133	3984133	Splice_Site	C	G	p.T73_splice
BLCA	TCGA-DK-A1A6-01	DHDDS	ENST00000525682.2,ENST00000431933.1	chr1	26769326:26769364:26772806:26772923:26774049:26774106,26769326:26769364:26772806:26772923:26784281:26784396,	26772807	26772923	26772806	26772806	Splice_Site	G	A	p.K108_splice
BLCA	TCGA-DK-A1A6-01	EPB41	ENST00000398863.2,ENST00000460378.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373798.1,ENST00000356093.2	chr1	29424318:29424447:29438879:29438960:29442210:29442315,29435847:29435949:29438879:29438960:29442210:29442315,	29438880	29438960	29438879	29438879	Splice_Site	G	C	p.T806_splice
BLCA	TCGA-DK-A1A6-01	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000458636.1,ENST00000317304.6	chr20	45630098:45630112:45633580:45633723:45644819:45644936,	45633581	45633723	45633580	45633580	Splice_Site	G	C	p.R52_splice
BLCA	TCGA-DK-A1A7-01	POLR3H	ENST00000337566.5	chr22	41926690:41926892:41928097:41928161:41936702:41936799,	41928098	41928161	41928097	41928097	Splice_Site	C	A	p.F120_splice
BLCA	TCGA-DK-A1A7-01	HNRNPAB	ENST00000506339.1	chr5	177636330:177636448:177637132:177637273:177637553:177638120,177636330:177636433:177637132:177637273:177637553:177638156,	177637133	177637273	177637274	177637274	Splice_Site	G	A	p.S310_splice
BLCA	TCGA-DK-A1A7-01	TPK1	ENST00000547966.1,ENST00000552881.1,ENST00000360057.3	chr7	144288516:144288662:144320258:144320354:144345899:144345972,	144320259	144320354	144320258	144320258	Splice_Site	C	T	p.K118_splice
BLCA	TCGA-DK-A1AB-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47142947	47142947	Splice_Site	C	T	p.G1672_splice
BLCA	TCGA-DK-A1AC-01	MARK2	ENST00000361128.5,ENST00000413835.2,ENST00000377810.3,ENST00000408948.3,ENST00000513765.2,ENST00000350490.7,ENST00000502399.3,ENST00000377809.4,ENST00000425897.2,ENST00000508192.1,ENST00000509502.2,ENST00000402010.2,ENST00000315032.8	chr11	63668251:63668351:63668428:63668541:63669669:63669802,	63668429	63668541	63668428	63668428	Splice_Site	G	A	p.E330_splice
BLCA	TCGA-DK-A1AC-01	BTN3A2	ENST00000527422.1	chr6	26368217:26368278:26368410:26368495:26368792:26368836,	26368411	26368495	26368410	26368410	Splice_Site	G	C	p.M1_splice
BLCA	TCGA-DK-A1AC-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32023627:32023951:32024362:32024680:32025834:32026167,	32024363	32024680	32024681	32024681	Splice_Site	C	T	p.E2609_splice
BLCA	TCGA-DK-A1AD-01	FAM20B	ENST00000263733.4	chr1	179012849:179013359:179019413:179019500:179023663:179023773,	179019414	179019500	179019501	179019501	Splice_Site	G	A	p.R155_splice
BLCA	TCGA-DK-A1AF-01	HGS	ENST00000575058.1,ENST00000329138.4	chr17	79660704:79660782:79660899:79660995:79661844:79661883,	79660900	79660995	79660899	79660899	Splice_Site	G	T	p.R281_splice
BLCA	TCGA-DK-A1AG-01	CDC6	ENST00000209728.4	chr17	38457079:38457282:38457719:38457860:38458163:38459171,	38457720	38457860	38457718	38457718	Splice_Site	A	G	p.L485_splice
BLCA	TCGA-DK-A1AG-01	PANK3	ENST00000239231.6,ENST00000520504.1	chr5	167984615:167984626:167986036:167986162:167988397:167988521,	167986037	167986162	167986163	167986163	Splice_Site	C	T	p.K313_splice
BLCA	TCGA-DK-A2HX-01	SH3D19	ENST00000409598.4,ENST00000455740.1,ENST00000409252.2,ENST00000514152.1,ENST00000304527.4	chr4	152080391:152080504:152086740:152086848:152095821:152096444,	152086741	152086848	152086849	152086849	Splice_Site	C	T	p.D232_splice
BLCA	TCGA-DK-A2I1-01	COL4A1	ENST00000375820.4,ENST00000543140.1	chr13	110863993:110864020:110864215:110864269:110864763:110864826,	110864216	110864269	110864269	110864270	Splice_Site	CC	AA	p.G130_splice
BLCA	TCGA-DK-A2I4-01	ANKLE2	ENST00000337516.5,ENST00000357997.5	chr12	133324723:133324917:133327228:133327435:133331260:133331719,	133327229	133327435	133327436	133327436	Splice_Site	C	G	p.E214_splice
BLCA	TCGA-DK-A2I4-01	ITGA3	ENST00000320031.8,ENST00000007722.7,ENST00000507771.1,ENST00000506827.1,ENST00000505306.1	chr17	48154763:48154811:48155409:48155489:48155570:48155648,	48155410	48155489	48155409	48155409	Splice_Site	G	A	p.M714_splice
BLCA	TCGA-DK-A2I4-01	BTN3A1	ENST00000082468.7,ENST00000289361.6,ENST00000414912.2	chr6	26411336:26411363:26411782:26411809:26413396:26414301,	26411783	26411809	26411782	26411782	Splice_Site	G	A	p.E331_splice
BLCA	TCGA-DK-A2I4-01	SNX14	ENST00000508980.1	chr6	86253322:86253478:86256833:86256944:86257034:86257115,	86256834	86256944	86256945	86256945	Splice_Site	C	G	p.V332_splice
BLCA	TCGA-DK-A2I4-01	SNX14	ENST00000346348.3,ENST00000369627.2,ENST00000515216.1,ENST00000503491.1,ENST00000369635.2,ENST00000314673.3,ENST00000505648.1,ENST00000513865.1	chr6	86253322:86253478:86256829:86256944:86257034:86257115,	86256830	86256944	86256945	86256945	Splice_Site	C	G	p.V332_splice
BLCA	TCGA-DK-A2I4-01	BBS9	ENST00000242067.6,ENST00000434373.1,ENST00000433714.1	chr7	33388679:33388782:33392470:33392485:33397466:33397607,33390830:33390935:33392470:33392485:33397466:33397607,	33392471	33392485	33392470	33392470	Splice_Site	G	C	p.D513_splice
BLCA	TCGA-DK-A3IL-01	KLHL13	ENST00000541812.1,ENST00000371876.1,ENST00000469946.1,ENST00000447671.2,ENST00000545703.1,ENST00000539496.1,ENST00000371878.1,ENST00000540167.1,ENST00000371882.1,ENST00000262820.3	chrX	117053483:117053680:117054200:117054333:117079396:117079538,	117054201	117054333	117054334	117054334	Splice_Site	C	A	p.G81_splice
BLCA	TCGA-DK-A3IN-01	SEC23B	ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000262544.2	chr20	18511323:18511447:18513307:18513388:18516296:18516386,	18513308	18513388	18513307	18513307	Splice_Site	G	C	p.T412_splice
BLCA	TCGA-DK-A3IN-01	KALRN	ENST00000354186.4,ENST00000360013.3,ENST00000291478.5	chr3	124352698:124352800:124356054:124356150:124369654:124369762,	124356055	124356150	124356151	124356151	Splice_Site	G	A	p.L1887_splice
BLCA	TCGA-DK-A3IQ-01	UGT3A2	ENST00000513300.1,ENST00000282507.3	chr5	36039761:36039810:36048990:36049522:36051971:36052086,	36048991	36049522	36049523	36049523	Splice_Site	C	T	p.R104_splice
BLCA	TCGA-DK-A3IQ-01	SLC26A4	ENST00000265715.3	chr7	107323899:107323982:107329497:107329645:107330568:107330682,	107329498	107329645	107329646	107329646	Splice_Site	G	A	p.Q383_splice
BLCA	TCGA-DK-A3WW-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000313382.9,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144874680:144874904:144875976:144876028:144877035:144877271,	144875977	144876028	144876029	144876029	Splice_Site	C	G	p.K1551_splice
BLCA	TCGA-DK-A3WW-01	ETV6	ENST00000396373.4	chr12	12006360:12006495:12022357:12022903:12037378:12037521,	12022358	12022903	12022357	12022357	Splice_Site	G	T	p.D155_splice
BLCA	TCGA-DK-A3WW-01	CRABP1	ENST00000299529.6	chr15	78633384:78633563:78635840:78635954:78640268:78640420,	78635841	78635954	78635840	78635840	Splice_Site	G	A	p.S84_splice
BLCA	TCGA-DK-A3WW-01	ACAN	ENST00000439576.2,ENST00000561243.1,ENST00000559004.1	chr15	89416199:89416256:89417072:89417255:89417635:89417712,	89417073	89417255	89417256	89417256	Splice_Site	G	T	p.P2506_splice
BLCA	TCGA-DK-A3WW-01	EPB41L3	ENST00000540638.2,ENST00000400111.3,ENST00000545076.1,ENST00000542652.2	chr18	5396199:5396331:5397056:5397425:5406775:5406967,	5397057	5397425	5397426	5397426	Splice_Site	C	G	p.K825_splice
BLCA	TCGA-DK-A3WW-01	NDUFA7	ENST00000593729.1,ENST00000301457.2	chr19	8376295:8376479:8381379:8381529:8385740:8385790,	8381380	8381529	8381530	8381530	Splice_Site	C	A	p.R34_splice
BLCA	TCGA-DK-A3WW-01	CDK7	ENST00000506789.1	chr5	68546571:68546658:68548244:68548278:68550428:68550494,68531220:68531280:68548244:68548278:68550428:68550494,68531220:68531280:68548244:68548278:68553869:68553980,	68548245	68548278	68548244	68548244	Splice_Site	G	C	p.I43_splice
BLCA	TCGA-DK-A3WW-01	EZH2	ENST00000460911.1,ENST00000350995.2,ENST00000492143.1,ENST00000320356.2,ENST00000483967.1	chr7	148511050:148511229:148512005:148512131:148512597:148512638,	148512006	148512131	148512132	148512132	Splice_Site	C	G	p.D511_splice
BLCA	TCGA-DK-A3WW-01	NDUFB9	ENST00000522532.1,ENST00000518008.1	chr8	125551384:125551528:125555327:125555520:125559240:125559354,	125555328	125555520	125555327	125555327	Splice_Site	G	C	p.R34_splice
BLCA	TCGA-DK-A3X1-01	YIPF1	ENST00000072644.1,ENST00000464950.2,ENST00000412288.1,ENST00000539954.1	chr1	54344314:54344395:54348785:54348949:54355385:54355406,54344314:54344395:54348785:54348949:54354579:54354659,	54348786	54348949	54348950	54348950	Splice_Site	C	T	p.E11_splice
BLCA	TCGA-DK-A3X1-01	METTL5	ENST00000392640.2,ENST00000409965.1,ENST00000260953.5,ENST00000409340.1,ENST00000537825.1	chr2	170668274:170668368:170668966:170669016:170671986:170672038,	170668967	170669016	170669018	170669018	Splice_Site	T	C	p.E181_splice
BLCA	TCGA-DK-A3X1-01	NEK11	ENST00000507910.1,ENST00000510688.1,ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000383366.4,ENST00000508196.1,ENST00000356918.4,ENST00000506695.1,ENST00000511262.1	chr3	130748552:130748722:130799266:130799432:130828646:130828765,	130799267	130799432	130799266	130799266	Splice_Site	G	C	p.L57_splice
BLCA	TCGA-DK-A3X1-01	SND1	ENST00000465900.1,ENST00000486037.1,ENST00000354725.3	chr7	127527964:127528065:127544799:127544872:127569240:127569280,	127544800	127544872	127544799	127544799	Splice_Site	G	A	p.R485_splice
BLCA	TCGA-E5-A2PC-01	SIKE1	ENST00000060969.5,ENST00000510745.1,ENST00000369528.5	chr1	115316965:115316993:115318966:115319080:115321762:115321905,	115318967	115319080	115318966	115318966	Splice_Site	C	T	p.E174_splice
BLCA	TCGA-E7-A3Y1-01	MPP7	ENST00000375719.3,ENST00000540098.1,ENST00000337532.5,ENST00000375732.1,ENST00000441595.2,ENST00000496637.2,ENST00000445954.2	chr10	28348578:28348672:28358700:28358781:28378599:28378770,	28358701	28358781	28358781	28358782	Splice_Site	CC	AA	p.G375_splice
BLCA	TCGA-E7-A3Y1-01	FAM19A4	ENST00000295569.7	chr3	68788266:68788350:68802013:68802169:68929880:68929996,	68802014	68802169	68802170	68802170	Splice_Site	C	T	p.G44_splice
BLCA	TCGA-FD-A3B3-01	GYPC	ENST00000356887.7	chr2	127413764:127413888:127447830:127447887:127451439:127451523,	127447831	127447887	127447889	127447889	Splice_Site	T	A	p.E36_splice
BLCA	TCGA-FD-A3B3-01	HSD17B10	ENST00000375304.5,ENST00000168216.6,ENST00000495986.1,ENST00000375298.4	chrX	53458935:53459064:53459194:53459359:53460668:53460833,	53459195	53459359	53459194	53459194	Splice_Site	C	T	p.D119_splice
BLCA	TCGA-FD-A3B5-01	LYST	ENST00000389794.3,ENST00000389793.2	chr1	235904721:235904928:235907278:235907457:235909635:235909827,	235907279	235907457	235907458	235907458	Splice_Site	C	G	p.E2658_splice
BLCA	TCGA-FD-A3B6-01	SYT6	ENST00000609117.1,ENST00000610096.1,ENST00000369547.1,ENST00000607941.1,ENST00000393296.1,ENST00000610222.1	chr1	114636380:114636425:114640348:114640499:114641715:114641887,	114640349	114640499	114640500	114640500	Splice_Site	C	G	p.R370_splice
BLCA	TCGA-FD-A3N5-01	CNKSR3	ENST00000607772.1,ENST00000479339.1	chr6	154754599:154754641:154762425:154762513:154763221:154763424,	154762426	154762513	154762424	154762424	Splice_Site	A	C	p.K169_splice
BLCA	TCGA-FD-A3NA-01	GLB1L3	ENST00000431683.2,ENST00000455971.2	chr11	134179521:134179657:134180464:134180545:134180957:134181064,	134180465	134180545	134180464	134180464	Splice_Site	G	C	p.D367_splice
BLCA	TCGA-FD-A3SJ-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17425146:17425198:17426742:17426804:17430354:17430496,	17426743	17426804	17426805	17426805	Splice_Site	G	T	p.K66_splice
BLCA	TCGA-FD-A3SL-01	LETMD1	ENST00000548516.1,ENST00000547029.1	chr12	51442128:51442261:51442816:51442968:51450132:51450174,51442128:51442261:51442816:51442968:51449617:51449631,51442140:51442154:51442816:51442968:51450132:51450174,	51442817	51442968	51442969	51442969	Splice_Site	G	A	p.G92_splice
BLCA	TCGA-FD-A3SL-01	ATXN2	ENST00000389153.4,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000392645.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111951277:111951343:111953957:111954167:111956052:111956231,	111953958	111954167	111953957	111953957	Splice_Site	C	T	p.G619_splice
BLCA	TCGA-FD-A3SN-01	PTPN21	ENST00000554270.1,ENST00000556564.1,ENST00000554628.1,ENST00000536337.1,ENST00000328736.3,ENST00000555243.1	chr14	88971647:88971715:88974266:88974364:88983435:88983605,	88974267	88974364	88974366	88974366	Splice_Site	T	C	p.R117_splice
BLCA	TCGA-FD-A3SN-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2,ENST00000415489.1	chr2	55874535:55874588:55882034:55882088:55883265:55883355,	55882035	55882088	55882034	55882034	Splice_Site	C	T	p.G499_splice
BLCA	TCGA-FD-A3SQ-01	PDCL	ENST00000259467.4	chr9	125580622:125582915:125585294:125585476:125588894:125588965,	125585295	125585476	125585294	125585294	Splice_Site	C	A	p.K118_splice
BLCA	TCGA-FD-A3SS-01	ACLY	ENST00000352035.2,ENST00000393896.2,ENST00000353196.1,ENST00000537919.1,ENST00000590151.1	chr17	40035049:40035177:40039374:40039485:40040445:40040527,	40039375	40039485	40039486	40039486	Splice_Site	C	A	p.I719_splice
BLCA	TCGA-FJ-A3ZE-01	SLAMF8	ENST00000471286.1,ENST00000289707.5	chr1	159799797:159799982:159802665:159802971:159803051:159803159,	159802666	159802971	159802972	159802972	Splice_Site	G	A	p.A225_splice
BLCA	TCGA-FJ-A3ZE-01	HCK	ENST00000538448.1,ENST00000518730.1,ENST00000486475.1,ENST00000375862.2,ENST00000375852.2,ENST00000520553.1,ENST00000262651.3,ENST00000534862.1	chr20	30671696:30671846:30672193:30672346:30674430:30674610,	30672194	30672346	30672193	30672193	Splice_Site	G	C	p.K228_splice
BLCA	TCGA-FJ-A3ZF-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000605210.1,ENST00000454282.1	chr5	72192284:72192383:72192882:72192978:72195832:72195908,	72192883	72192978	72192882	72192882	Splice_Site	G	C	p.G748_splice
BLCA	TCGA-FT-A3EE-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128633708:128633818:128638710:128638779:128640056:128640188,	128638711	128638779	128638781	128638781	Splice_Site	T	C	p.D367_splice
BLCA	TCGA-G2-A2EC-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290634	108290634	Splice_Site	G	A	p.D511_splice
BLCA	TCGA-G2-A2EF-01	CASP9	ENST00000474305.2,ENST00000400777.3,ENST00000546424.1,ENST00000375890.4,ENST00000333868.5	chr1	15820386:15820496:15821767:15821947:15831105:15831253,	15821768	15821947	15821948	15821948	Splice_Site	C	G	p.E290_splice
BLCA	TCGA-G2-A2EF-01	HSPG2	ENST00000430507.1,ENST00000374695.3	chr1	22178038:22178190:22178283:22178419:22178580:22178625,	22178284	22178419	22178283	22178283	Splice_Site	C	T	p.P2336_splice
BLCA	TCGA-G2-A2EF-01	BTBD16	ENST00000260723.4	chr10	124034554:124034614:124036305:124036454:124043365:124043439,	124036306	124036454	124036305	124036305	Splice_Site	G	A	p.H7_splice
BLCA	TCGA-G2-A2EF-01	CYP3A7	ENST00000336374.2,ENST00000477357.1	chr7	99311091:99311158:99312177:99312305:99313380:99313529,	99312178	99312305	99312307	99312307	Splice_Site	T	C	p.K224_splice
BLCA	TCGA-G2-A2EF-01	NONO	ENST00000418921.1	chrX	70511766:70511822:70514247:70514378:70516414:70516510,	70514248	70514378	70514379	70514379	Splice_Site	G	A	p.T217_splice
BLCA	TCGA-G2-A2EF-01	NONO	ENST00000276079.8,ENST00000535149.1,ENST00000373856.3,ENST00000373841.1,ENST00000471419.2	chrX	70511766:70511822:70514076:70514378:70516414:70516510,	70514077	70514378	70514379	70514379	Splice_Site	G	A	p.T217_splice
BLCA	TCGA-G2-A2EJ-01	NTM	ENST00000550167.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132016175:132016408:132081915:132082041:132177582:132177656,	132081916	132082041	132082042	132082042	Splice_Site	G	A	p.A176_splice
BLCA	TCGA-G2-A2EJ-01	SSBP2	ENST00000507655.1,ENST00000505980.1,ENST00000504174.1,ENST00000320672.4,ENST00000512098.1,ENST00000509013.2	chr5	80809476:80809536:80911291:80911376:80932375:80932437,	80911292	80911376	80911377	80911377	Splice_Site	C	G	p.C66_splice
BLCA	TCGA-G2-A2EJ-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199869	20199869	Splice_Site	C	T	p.E39_splice
BLCA	TCGA-G2-A2EO-01	STAM2	ENST00000463854.1,ENST00000482997.1	chr2	153004738:153004814:153006658:153006743:153032116:153032243,	153006659	153006743	153006744	153006744	Splice_Site	C	T	p.E14_splice
BLCA	TCGA-G2-A2ES-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20847139:20847264:20848088:20848212:20848393:20848634,	20848089	20848212	20848088	20848088	Splice_Site	C	A	p.Q1709_splice
BLCA	TCGA-G2-A2ES-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37057287:37057434:37058992:37059267:37060945:37061120,	37058993	37059267	37059268	37059268	Splice_Site	G	A	p.S2562_splice
BLCA	TCGA-G2-A2ES-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971209	21971209	Splice_Site	T	A	p.V51_splice
BLCA	TCGA-G2-A2ES-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971209	21971209	Splice_Site	T	A	p.V51_splice
BLCA	TCGA-G2-A2ES-01	PHF6	ENST00000416404.2	chrX	133507402:133507497:133511601:133511785:133527530:133527664,	133511602	133511785	133511786	133511786	Splice_Site	G	A	p.M46_splice
BLCA	TCGA-G2-A3IE-01	UBE2C	ENST00000335046.3	chr20	44441644:44441929:44442075:44442103:44443022:44443109,44441312:44441435:44442075:44442103:44444492:44444552,44441312:44441435:44442075:44442103:44443022:44443109,	44442076	44442103	44442074	44442074	Splice_Site	A	G	p.R34_splice
BLCA	TCGA-G2-A3IE-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50725539:50725693:50726095:50726222:50726365:50726466,	50726096	50726222	50726223	50726223	Splice_Site	C	A	p.R494_splice
BLCA	TCGA-G2-A3IE-01	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000377653.2,ENST00000358144.2	chr9	39177314:39177499:39178153:39178357:39193124:39193272,	39178154	39178357	39178358	39178358	Splice_Site	C	G	p.K180_splice
BLCA	TCGA-G2-A3VY-01	HLA-C	ENST00000470363.1	chr6	31237114:31237162:31237269:31237862:31237986:31238199,	31237270	31237862	31237268	31237268	Splice_Site	A	C	p.C350_splice
BLCA	TCGA-G2-A3VY-01	HLA-C	ENST00000383329.3	chr6	31237114:31237162:31237269:31237320:31237742:31237862,	31237270	31237320	31237268	31237268	Splice_Site	A	C	p.C350_splice
BLCA	TCGA-G2-A3VY-01	HLA-C	ENST00000376228.5,ENST00000376237.4,ENST00000487245.1	chr6	31237114:31237162:31237269:31237302:31237742:31237862,	31237270	31237302	31237268	31237268	Splice_Site	A	C	p.C350_splice
BLCA	TCGA-G2-A3VY-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000487363.1,ENST00000397519.2	chr9	15486824:15486929:15489983:15490122:15506558:15506635,	15489984	15490122	15490123	15490123	Splice_Site	C	A	p.T50_splice
BLCA	TCGA-GC-A3I6-01	MPHOSPH6	ENST00000563100.1,ENST00000258169.4,ENST00000563504.1	chr16	82182263:82182468:82182913:82183008:82185028:82185119,	82182914	82183008	82183009	82183009	Splice_Site	C	A	p.K86_splice
BLCA	TCGA-GC-A3RB-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000508320.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000354312.3,ENST00000514626.1,ENST00000521422.1,ENST00000345306.6	chr5	68682222:68682292:68684860:68684972:68687657:68687746,	68684861	68684972	68684860	68684860	Splice_Site	G	A	p.N310_splice
BLCA	TCGA-GC-A3RC-01	TMTC1	ENST00000539277.1,ENST00000256062.5	chr12	29757110:29757232:29786079:29786269:29793492:29794171,29757151:29757232:29786079:29786269:29812812:29812916,29757110:29757232:29786079:29786269:29904598:29904805,	29786080	29786269	29786270	29786270	Splice_Site	C	A	p.R205_splice
BLCA	TCGA-GC-A3RC-01	SERHL2	ENST00000335879.5,ENST00000447870.2,ENST00000340239.4,ENST00000527167.1,ENST00000534080.1,ENST00000477564.1,ENST00000416156.2,ENST00000327678.5	chr22	42952069:42952089:42952519:42952594:42954353:42954418,	42952520	42952594	42952596	42952596	Splice_Site	T	A	p.D141_splice
BLCA	TCGA-GC-A3RC-01	TRIM14	ENST00000478401.1,ENST00000342043.3,ENST00000341469.2,ENST00000375098.3	chr9	100857148:100857311:100862212:100862446:100872170:100872266,	100862213	100862446	100862212	100862212	Splice_Site	C	T	p.Q179_splice
BLCA	TCGA-GC-A3WC-01	DOCK8	ENST00000524396.1,ENST00000382341.1,ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000483757.1,ENST00000495184.1,ENST00000454469.2	chr9	334224:334384:336581:336718:339005:339099,	336582	336718	336580	336580	Splice_Site	A	T	p.G429_splice
BLCA	TCGA-GC-A3YS-01	DCT	ENST00000483392.2,ENST00000377028.5,ENST00000446125.1	chr13	95112344:95112480:95114263:95114443:95117886:95118053,	95114264	95114443	95114445	95114445	Splice_Site	T	A	p.S288_splice
BLCA	TCGA-GC-A3YS-01	RNGTT	ENST00000538899.1,ENST00000369485.4,ENST00000265607.6	chr6	89323990:89324114:89388071:89388138:89479492:89479593,	89388072	89388138	89388140	89388140	Splice_Site	T	C	p.G480_splice
BLCA	TCGA-GD-A2C5-01	PRKD3	ENST00000379066.1,ENST00000469275.1,ENST00000234179.2	chr2	37486725:37486824:37487365:37487527:37494572:37494679,	37487366	37487527	37487528	37487528	Splice_Site	C	G	p.N629_splice
BLCA	TCGA-GD-A3OP-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351299	169351299	Splice_Site	G	A	p.K266_splice
BLCA	TCGA-GD-A3OP-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220310	29220310	Splice_Site	A	T	p.H1481_splice
BLCA	TCGA-GD-A3OP-01	CC2D1A	ENST00000585896.1,ENST00000589606.1,ENST00000586955.1,ENST00000318003.7	chr19	14024249:14024451:14028882:14029007:14029316:14029389,	14028883	14029007	14028882	14028882	Splice_Site	G	A	p.G250_splice
BLCA	TCGA-GD-A3OP-01	SLC22A2	ENST00000366953.3,ENST00000486916.1,ENST00000491092.1	chr6	160662505:160662618:160663325:160663434:160664603:160664818,	160663326	160663434	160663435	160663435	Splice_Site	C	G	p.D427_splice
BLCA	TCGA-GD-A3OQ-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233709078:233709284:233710441:233710596:233712057:233712209,	233710442	233710596	233710441	233710441	Splice_Site	G	A	p.S1102_splice
BLCA	TCGA-GD-A3OS-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057980	145057980	Splice_Site	C	T	p.E593_splice
BLCA	TCGA-GD-A3OS-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057980	145057980	Splice_Site	C	T	p.E593_splice
BLCA	TCGA-GU-A42R-01	LRRC41	ENST00000496156.1,ENST00000343304.6	chr1	46744853:46744929:46745163:46745286:46745863:46745962,	46745164	46745286	46745288	46745288	Splice_Site	T	C	p.E674_splice
BLCA	TCGA-GV-A3JV-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	483376:483597:484634:484812:485267:485346,	484635	484812	484634	484634	Splice_Site	C	T	p.A311_splice
BLCA	TCGA-GV-A3JW-01	C8A	ENST00000361249.3	chr1	57372339:57372465:57373628:57373786:57378075:57378298,	57373629	57373786	57373628	57373628	Splice_Site	G	A	p.E408_splice
BLCA	TCGA-GV-A3JZ-01	POU6F2	ENST00000416452.1	chr7	39472675:39472882:39500145:39500314:39503780:39504309,	39500146	39500314	39500145	39500145	Splice_Site	G	A	p.N468_splice
BLCA	TCGA-GV-A3QF-01	RPL5	ENST00000370321.3,ENST00000315741.5,ENST00000461952.1	chr1	93299101:93299217:93300335:93300470:93301746:93301828,	93300336	93300470	93300335	93300335	Splice_Site	G	A	p.I64_splice
BLCA	TCGA-GV-A3QF-01	CSMD1	ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2823296:2823476:2824091:2824268:2830638:2830821,	2824092	2824268	2824091	2824091	Splice_Site	C	G	p.I3035_splice
BLCA	TCGA-GV-A3QG-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109379691	109379691	Splice_Site	A	G	p.G900_splice
BLCA	TCGA-GV-A3QI-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46801743:46801869:46801977:46802035:46804823:46804918,	46801978	46802035	46802036	46802036	Splice_Site	C	T	p.G750_splice
BLCA	TCGA-GV-A3QI-01	ZNF641	ENST00000547026.1,ENST00000544117.2,ENST00000301042.3	chr12	48738433:48738495:48739127:48739257:48741034:48741126,	48739128	48739257	48739259	48739259	Splice_Site	T	A	p.G107_splice
BLCA	TCGA-GV-A3QI-01	CARD14	ENST00000344227.2,ENST00000573882.1,ENST00000575500.1	chr17	78178833:78179004:78179329:78179451:78180768:78180884,	78179330	78179451	78179329	78179329	Splice_Site	G	C	p.E857_splice
BLCA	TCGA-GV-A3QI-01	PRKCSH	ENST00000585540.1,ENST00000592741.1	chr19	11558379:11558433:11558507:11558604:11559036:11559106,	11558508	11558604	11558507	11558507	Splice_Site	G	A	p.E337_splice
BLCA	TCGA-GV-A3QI-01	EFCAB6	ENST00000262726.7,ENST00000468552.1,ENST00000396231.2	chr22	44027984:44028118:44030981:44031096:44062983:44063152,	44030982	44031096	44031097	44031097	Splice_Site	C	T	p.V662_splice
BLCA	TCGA-GV-A3QK-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139606259:139606442:139609146:139609213:139610961:139611141,	139609147	139609213	139609214	139609214	Splice_Site	C	T	p.G1456_splice
BLCA	TCGA-GV-A40E-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123868387:123868643:123900386:123900541:123949340:123949550,	123900387	123900541	123900543	123900543	Splice_Site	T	G	p.N623_splice
BLCA	TCGA-GV-A40G-01	WDFY3	ENST00000514711.1,ENST00000295888.4,ENST00000322366.6	chr4	85630445:85630500:85634311:85634392:85636450:85636536,	85634312	85634392	85634393	85634393	Splice_Site	C	T	p.R2654_splice
BLCA	TCGA-H4-A2HO-01	BANP	ENST00000393207.1,ENST00000393208.2,ENST00000355163.5,ENST00000286122.7	chr16	88071578:88071617:88098872:88098938:88105674:88105736,	88098873	88098938	88098939	88098939	Splice_Site	G	T	p.Q447_splice
BLCA	TCGA-K4-A3WS-01	TINAGL1	ENST00000457433.2,ENST00000271064.7	chr1	32051040:32051086:32051353:32051477:32052310:32052356,	32051354	32051477	32051353	32051353	Splice_Site	G	A	p.A365_splice
BLCA	TCGA-K4-A3WS-01	NIPSNAP1	ENST00000496944.1,ENST00000455496.1	chr22	29966150:29966196:29966393:29966521:29976973:29977015,	29966394	29966521	29966393	29966393	Splice_Site	C	A	p.F76_splice
BLCA	TCGA-K4-A3WS-01	DMGDH	ENST00000540686.1,ENST00000517853.1	chr5	78340126:78340375:78359435:78359610:78365342:78365449,78329061:78329231:78359435:78359610:78365342:78365449,	78359436	78359610	78359611	78359611	Splice_Site	C	G	p.G34_splice
BLCA	TCGA-K4-A3WV-01	DICER1	ENST00000541352.1,ENST00000393063.1,ENST00000527414.1,ENST00000526495.1,ENST00000343455.3	chr14	95578508:95578584:95579428:95579561:95582003:95582158,	95579429	95579561	95579563	95579563	Splice_Site	T	A	p.R636_splice
BLCA	TCGA-BT-A20R-01	VGLL4	ENST00000418000.1	chr3	11643465:11643496:11744444:11744521:11760890:11761068,	11744445	11744521	11744444	11744444	Splice_Site	C	-	p.R22_splice
BLCA	TCGA-CU-A0YR-01	CDADC1	ENST00000251108.6	chr13	49829974:49830049:49833481:49833659:49840014:49840046,49829974:49830049:49833481:49833659:49841625:49841661,	49833482	49833659	49833659	49833660	Splice_Site	-	GTAA	p.A144_splice
BLCA	TCGA-CU-A0YR-01	CDADC1	ENST00000466868.1	chr13	49829974:49830049:49833621:49833659:49840014:49840046,49829974:49830049:49833621:49833659:49841625:49841661,	49833622	49833659	49833659	49833660	Splice_Site	-	GTAA	p.A144_splice
BLCA	TCGA-DK-A1A6-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44948987:44949175:44949967:44950109:44966654:44966781,	44949968	44950109	44950105	44950111	Splice_Site	ATTAAGT	-	p.K1293_splice
BLCA	TCGA-DK-A1AG-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44948987:44949175:44949967:44950109:44966654:44966781,	44949968	44950109	44950110	44950110	Splice_Site	G	-	p.K1293_splice
BLCA	TCGA-DK-A2I4-01	EZR	ENST00000367075.3	chr6	159208139:159208235:159210319:159210403:159239113:159239198,	159210320	159210403	159210405	159210406	Splice_Site	-	A	p.I5_splice
BLCA	TCGA-E5-A2PC-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000367284.5	chr1	201982309:201982426:201982956:201983152:201984336:201984922,	201982957	201983152	201983137	201983153	Splice_Site	TGAGCCGGGCCATGAGG	-	p.R334_splice
BLCA	TCGA-FD-A3B5-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000474446.1	chr1	182848384:182848545:182849631:182849743:182850398:182850560,	182849632	182849743	182849629	182849630	Splice_Site	-	A	p.E838_splice
BLCA	TCGA-FD-A3B6-01	PSPH	ENST00000395471.3,ENST00000275605.3,ENST00000437355.2,ENST00000421626.1	chr7	56084969:56085072:56087292:56087427:56088765:56088924,	56087293	56087427	56087292	56087292	Splice_Site	C	-	p.R92_splice
BLCA	TCGA-FD-A3B6-01	PSPH	ENST00000427797.1	chr7	56084969:56085072:56087292:56087501:56088765:56088924,	56087293	56087501	56087292	56087292	Splice_Site	C	-	p.R92_splice
BLCA	TCGA-G2-A2EF-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1704320	1704321	Splice_Site	-	C	p.T124_splice
BLCA	TCGA-G2-A2ES-01	PTTG1	ENST00000393964.1,ENST00000523659.1,ENST00000519287.1,ENST00000520452.1,ENST00000352433.5	chr5	159849346:159849410:159849715:159849900:159851243:159851301,	159849716	159849900	159849713	159849715	Splice_Site	CAG	-	p.S31_splice
BLCA	TCGA-GD-A3OP-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89088129:89088211:89106599:89106660:89155069:89155150,89088129:89088211:89106599:89106660:89133184:89133247,	89106600	89106660	89106662	89106663	Splice_Site	-	A	p.C359_splice
BLCA	TCGA-GV-A3JZ-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47537787:47537850:47538527:47538590:47538943:47539033,	47538528	47538590	47538527	47538527	Splice_Site	G	-	p.G373_splice
BRCA	TCGA-BH-A18Q-01	AASS	ENST00000417368.2,ENST00000473553.1,ENST00000393376.1	chr7	121719650:121719766:121721553:121721649:121726065:121726207,	121721554	121721649	121721545	121721553	Splice_Site	GTCACTCAC	-	e19+1
BRCA	TCGA-E2-A1IG-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000523512.1,ENST00000518929.1,ENST00000432313.2,ENST00000523419.1,ENST00000522406.1	chr17	67211955:67212141:67212357:67212499:67215685:67215912,	67212358	67212499	67212357	67212357	Splice_Site	C	A	e5+1
BRCA	TCGA-A2-A0ST-01	ABCC11	ENST00000356608.2,ENST00000565329.1,ENST00000394747.1,ENST00000394748.1	chr16	48201406:48201571:48204015:48204129:48204799:48204878,	48204016	48204129	48204014	48204014	Splice_Site	A	C	e27+2
BRCA	TCGA-A8-A08S-01	ABCG2	ENST00000237612.3	chr4	89016671:89016761:89018604:89018759:89020475:89020600,	89018605	89018759	89018761	89018761	Splice_Site	T	-	e12-2
BRCA	TCGA-B6-A0RV-01	ABL1	ENST00000318560.5,ENST00000372348.2	chr9	133748246:133748424:133750254:133750439:133753801:133753954,	133750255	133750439	133750254	133750254	Splice_Site	G	C	e7-1
BRCA	TCGA-BH-A1F2-01	ADAMTS2	ENST00000251582.7,ENST00000523450.1	chr5	178541289:178541325:178548661:178548751:178549644:178549768,	178548662	178548751	178548660	178548660	Splice_Site	A	G	e21+2
BRCA	TCGA-A7-A0CJ-01	AGPAT1	ENST00000412465.2	chr6	32137941:32138037:32138201:32138377:32139073:32139282,	32138202	32138377	32138201	32138201	Splice_Site	C	T	e3+1
BRCA	TCGA-E9-A1RF-01	AHCY	ENST00000538132.1,ENST00000480653.1,ENST00000217426.2	chr20	32868832:32868971:32873245:32873440:32878137:32878255,	32873246	32873440	32873245	32873245	Splice_Site	C	A	e9+1
BRCA	TCGA-AQ-A04H-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115220530:115220662:115220953:115221148:115222199:115222329,	115220954	115221148	115220952	115220952	Splice_Site	A	G	e8+2
BRCA	TCGA-AR-A0TS-01	AMPD1	ENST00000353928.6	chr1	115231181:115231362:115236056:115236068:115238070:115238207,	115236057	115236068	115236070	115236070	Splice_Site	T	A	e2-2
BRCA	TCGA-D8-A142-01	APOH	ENST00000577982.1,ENST00000205948.6,ENST00000581797.1	chr17	64216731:64216860:64219815:64219892:64222145:64222242,	64219816	64219892	64219815	64219815	Splice_Site	C	T	e4+1
BRCA	TCGA-BH-A0AZ-01	ARFGAP3	ENST00000437119.2,ENST00000263245.5	chr22	43222945:43223005:43227554:43227642:43230247:43230331,	43227555	43227642	43227644	43227644	Splice_Site	T	G	e6-2
BRCA	TCGA-A2-A0T0-01	ARHGAP24	ENST00000502537.1,ENST00000514229.1,ENST00000395184.1,ENST00000503995.1,ENST00000395183.2	chr4	86851425:86852195:86863218:86863426:86893188:86893321,86844886:86844923:86863218:86863426:86893188:86893321,	86863219	86863426	86863218	86863218	Splice_Site	G	T	e4-1
BRCA	TCGA-AR-A0U1-01	ARHGEF1	ENST00000347545.4,ENST00000337665.4,ENST00000600274.1,ENST00000595897.1,ENST00000354532.3,ENST00000599846.1	chr19	42410090:42410177:42410608:42410772:42410854:42410955,	42410609	42410772	42410774	42410774	Splice_Site	T	C	e27+2
BRCA	TCGA-E2-A1LH-01	ARNTL2	ENST00000261178.5	chr12	27485987:27486036:27521194:27521345:27533179:27533337,	27521195	27521345	27521193	27521193	Splice_Site	A	C	e2-2
BRCA	TCGA-B6-A0RV-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000532765.1,ENST00000278616.4,ENST00000533690.1	chr11	108186549:108186638:108186737:108186840:108188099:108188194,	108186738	108186840	108186737	108186737	Splice_Site	G	A	e41-1
BRCA	TCGA-A8-A09B-01	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113460526:113460607:113464932:113465040:113470396:113470525,	113464933	113465040	113464932	113464932	Splice_Site	G	C	e5-1
BRCA	TCGA-E9-A244-01	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000450950.2	chr3	193180550:193180612:193182728:193182917:193183813:193183971,	193182729	193182917	193182727	193182727	Splice_Site	A	T	e12+2
BRCA	TCGA-BH-A0HA-01	ATP13A4	ENST00000392443.3	chr3	193182728:193182917:193183870:193183971:193185104:193185137,	193183871	193183971	193183869	193183869	Splice_Site	A	G	e11+2
BRCA	TCGA-A7-A0DA-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55359038:55359229:55361813:55361902:55362402:55362561,	55361814	55361902	55361813	55361813	Splice_Site	C	T	e10+1
BRCA	TCGA-A2-A25D-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142232342:142232480:142234236:142234357:142238510:142238626,	142234237	142234357	142234359	142234359	Splice_Site	T	C	e25-2
BRCA	TCGA-A8-A08R-01	ATXN7L1	ENST00000472195.1,ENST00000474433.1,ENST00000419735.3,ENST00000477775.1	chr7	105254584:105255263:105260646:105260768:105264521:105264713,	105260647	105260768	105260645	105260645	Splice_Site	A	T	e9+2
BRCA	TCGA-A8-A081-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32832521:32832710:32836514:32836649:32842791:32843943,	32836515	32836649	32836514	32836514	Splice_Site	G	T	e73-1
BRCA	TCGA-A1-A0SO-01	BRCA1	ENST00000352993.3,ENST00000492859.1,ENST00000477152.1,ENST00000354071.3,ENST00000467274.1,ENST00000476777.1,ENST00000471181.2	chr17	41267742:41267796:41276033:41276132:41277293:41277373,41267742:41267796:41276033:41276132:41277287:41277317,	41276034	41276132	41276033	41276033	Splice_Site	C	T	e1+1
BRCA	TCGA-BH-A0HK-01	C17orf53	ENST00000585683.1	chr17	42228331:42228412:42230004:42230145:42231920:42232032,42228331:42228412:42230004:42230145:42231923:42232032,	42230005	42230145	42230004	42230004	Splice_Site	G	C	e5-1
BRCA	TCGA-B6-A0IP-01	C4orf50	ENST00000324058.5	chr4	5977625:5977682:5981900:5982065:5990073:5990166,	5981901	5982065	5982066	5982066	Splice_Site	C	A	e2-1
BRCA	TCGA-D8-A27L-01	C5orf22	ENST00000510659.1,ENST00000513967.1,ENST00000325366.9	chr5	31541387:31541509:31545752:31545819:31548596:31548794,31541387:31541509:31545752:31545819:31551399:31551501,	31545753	31545819	31545752	31545752	Splice_Site	G	A	e7-1
BRCA	TCGA-A8-A09C-01	CADPS	ENST00000283269.9	chr3	62484836:62484943:62499312:62499381:62501733:62501857,	62499313	62499381	62499312	62499312	Splice_Site	C	T	e17+1
BRCA	TCGA-EW-A1IZ-01	CAPRIN2	ENST00000308433.5,ENST00000540436.1,ENST00000454014.2,ENST00000298892.5,ENST00000417045.1,ENST00000540584.1,ENST00000537108.1,ENST00000251071.5,ENST00000395805.2,ENST00000542550.1	chr12	30893953:30894040:30904004:30904067:30906277:30906472,	30904005	30904067	30904069	30904069	Splice_Site	T	C	e2-2
BRCA	TCGA-A8-A094-01	CBFB	ENST00000290858.6,ENST00000563939.2,ENST00000412916.2,ENST00000561924.2	chr16	67070541:67070658:67100584:67100701:67116115:67116200,	67100585	67100701	67100703	67100703	Splice_Site	T	C	e4+2
BRCA	TCGA-E2-A14N-01	CCDC69	ENST00000355417.2,ENST00000521308.1,ENST00000518189.1	chr5	150565583:150565685:150566946:150567020:150578557:150578645,	150566947	150567020	150566946	150566946	Splice_Site	C	A	e5+1
BRCA	TCGA-A8-A092-01	CCNB1	ENST00000508407.1	chr5	68463999:68464170:68467096:68467279:68470703:68470890,	68467097	68467279	68467280	68467283	Splice_Site	GTAA	-	e4+1
BRCA	TCGA-A8-A06Y-01	CCT6B	ENST00000436961.3,ENST00000314144.5,ENST00000585073.1	chr17	33269577:33269662:33269814:33269925:33278968:33279072,	33269815	33269925	33269814	33269814	Splice_Site	C	T	e6+1
BRCA	TCGA-BH-A0DZ-01	CD14	ENST00000498971.2	chr5	140012403:140012565:140012653:140012777:140013115:140013236,	140012654	140012777	140012778	140012778	Splice_Site	C	T	e1-1
BRCA	TCGA-BH-A0H7-01	CD22	ENST00000598028.1	chr19	35823555:35823827:35826938:35827244:35831783:35831853,35820114:35820133:35826938:35827244:35828657:35828710,	35826939	35827244	35827245	35827245	Splice_Site	G	A	e3+1
BRCA	TCGA-A2-A0D2-01	CD46	ENST00000358170.2,ENST00000322875.4,ENST00000361067.1,ENST00000367047.1	chr1	207940357:207940540:207940951:207940996:207941123:207941168,	207940952	207940996	207940997	207940997	Splice_Site	G	C	e7+1
BRCA	TCGA-E2-A1L8-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844245	68844245	Splice_Site	G	A	e6+1
BRCA	TCGA-AR-A24X-01	CDH1	ENST00000566510.1,ENST00000562118.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68857301:68857529:68862076:68862207:68863556:68863700,	68862077	68862207	68862076	68862076	Splice_Site	G	T	e14-1
BRCA	TCGA-A2-A0EW-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844098	68844098	Splice_Site	A	G	e6-2
BRCA	TCGA-BH-A0HP-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844099	68844099	Splice_Site	G	A	e6-1
BRCA	TCGA-A7-A26G-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37657502:37657692:37665957:37666014:37667781:37667883,	37665958	37666014	37666015	37666016	Splice_Site	-	T	e7+1
BRCA	TCGA-EW-A1IZ-01	CLCN2	ENST00000434054.2,ENST00000457512.1,ENST00000265593.4	chr3	184072335:184072446:184072691:184072761:184073161:184073317,	184072692	184072761	184072690	184072690	Splice_Site	A	G	e13+2
BRCA	TCGA-AR-A1AR-01	CLCN3	ENST00000513761.1,ENST00000347613.4,ENST00000360642.3	chr4	170541987:170542214:170557063:170557239:170601200:170601358,	170557064	170557239	170557240	170557240	Splice_Site	G	T	e1+1
BRCA	TCGA-C8-A12W-01	CNTN3	ENST00000263665.6	chr3	74414716:74414853:74418339:74418524:74419039:74419142,	74418340	74418524	74418526	74418526	Splice_Site	T	C	e7-2
BRCA	TCGA-A7-A26G-01	COL25A1	ENST00000399127.1,ENST00000399126.1,ENST00000494183.1,ENST00000399132.1	chr4	109810856:109810889:109817822:109817867:109820309:109820336,	109817823	109817867	109817822	109817822	Splice_Site	C	G	e15+1
BRCA	TCGA-AR-A0TW-01	CPNE1	ENST00000439669.1	chr20	34219866:34219947:34220084:34220170:34220232:34220307,	34220085	34220170	34220172	34220172	Splice_Site	T	C	e4-2
BRCA	TCGA-AN-A0XV-01	CPNE3	ENST00000517354.1,ENST00000517391.1,ENST00000521271.1,ENST00000198765.4	chr8	87558855:87558909:87559938:87559998:87560528:87560662,	87559939	87559998	87559937	87559937	Splice_Site	A	C	e9-2
BRCA	TCGA-A8-A08L-01	CRAT	ENST00000318080.2,ENST00000415948.1,ENST00000458362.1	chr9	131864720:131864844:131865291:131865345:131866466:131866585,	131865292	131865345	131865291	131865305	Splice_Site	CTTGTCAATCATGAC	-	e5-1
BRCA	TCGA-B6-A0RI-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645518	67645518	Splice_Site	T	G	e1+2
BRCA	TCGA-A2-A0YF-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67645853	67645854	Splice_Site	-	TAC	e2-1
BRCA	TCGA-A2-A1FX-01	CTNNA1	ENST00000540387.1,ENST00000518825.1,ENST00000521368.1,ENST00000521387.1,ENST00000355078.5,ENST00000521724.1,ENST00000302763.7	chr5	138260944:138261096:138264934:138265045:138266161:138266198,	138264935	138265045	138264934	138264934	Splice_Site	G	T	e13-1
BRCA	TCGA-D8-A1XL-01	CTPS2	ENST00000380241.3,ENST00000443824.1,ENST00000359276.4	chrX	16709662:16709743:16711263:16711347:16711493:16711610,	16711264	16711347	16711263	16711263	Splice_Site	C	G	e5+1
BRCA	TCGA-BH-A0DZ-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43008652:43008813:43010539:43010722:43010811:43010918,	43010540	43010722	43010724	43010724	Splice_Site	T	G	e18-2
BRCA	TCGA-AN-A0XP-01	CYP24A1	ENST00000395955.3	chr20	52788115:52788209:52789447:52789638:52789860:52789955,	52789448	52789638	52789446	52789446	Splice_Site	A	T	e2+2
BRCA	TCGA-BH-A0B4-01	CYP2S1	ENST00000597754.1,ENST00000542619.1,ENST00000595590.1,ENST00000593545.1,ENST00000310054.4	chr19	41707197:41707277:41709354:41709542:41711862:41711880,	41709355	41709542	41709354	41709354	Splice_Site	G	C	e7-1
BRCA	TCGA-A8-A08O-01	DDX10	ENST00000322536.3,ENST00000526794.1	chr11	108712041:108712203:108722879:108722936:108788599:108788651,	108722880	108722936	108722938	108722938	Splice_Site	T	G	e16+2
BRCA	TCGA-AN-A0AR-01	DENND1A	ENST00000542603.1,ENST00000473039.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000373618.1,ENST00000394215.2,ENST00000474676.1	chr9	126345447:126345549:126371714:126371760:126392654:126392755,	126371715	126371760	126371761	126371761	Splice_Site	C	G	e11-1
BRCA	TCGA-E2-A15G-01	DENND1C	ENST00000381480.2	chr19	6479869:6479913:6479997:6480062:6481689:6481785,	6479998	6480062	6480063	6480063	Splice_Site	C	T	e2-1
BRCA	TCGA-A1-A0SI-01	DHX30	ENST00000445061.1	chr3	47852146:47852201:47859511:47859607:47868836:47868967,	47859512	47859607	47859511	47859511	Splice_Site	G	T	e2-1
BRCA	TCGA-C8-A132-01	DIDO1	ENST00000266070.4,ENST00000395343.1,ENST00000395335.2,ENST00000395340.1	chr20	61522311:61522507:61523338:61523428:61524160:61524314,	61523339	61523428	61523338	61523338	Splice_Site	C	G	e12+1
BRCA	TCGA-B6-A0I8-01	DNAJC27	ENST00000534855.1,ENST00000264711.2	chr2	25170227:25170617:25174262:25174423:25179911:25180034,	25174263	25174423	25174424	25174424	Splice_Site	C	G	e6-1
BRCA	TCGA-AO-A0JD-01	DOCK11	ENST00000276202.7,ENST00000276204.6	chrX	117752512:117752691:117758501:117758618:117761466:117761542,	117758502	117758618	117758501	117758501	Splice_Site	G	A	e32-1
BRCA	TCGA-A2-A04P-01	DPP8	ENST00000300141.6,ENST00000339244.5,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6,ENST00000558529.1	chr15	65792943:65793117:65799580:65799693:65804632:65804902,	65799581	65799693	65799695	65799695	Splice_Site	T	A	e3-2
BRCA	TCGA-A8-A06X-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000340834.4,ENST00000446842.2,ENST00000421834.2,ENST00000370769.4	chr6	56394245:56394572:56394771:56394931:56397141:56397308,	56394772	56394931	56394933	56394933	Splice_Site	T	C	e46-2
BRCA	TCGA-A8-A094-01	DYDC2	ENST00000444807.2,ENST00000256039.2,ENST00000372199.1,ENST00000372198.1,ENST00000411538.1,ENST00000372197.1	chr10	82122190:82122346:82122706:82122829:82126443:82126543,	82122707	82122829	82122706	82122706	Splice_Site	G	C	e2-1
BRCA	TCGA-E9-A249-01	ELSPBP1	ENST00000339841.2	chr19	48511907:48511994:48517427:48517565:48519149:48519296,	48517428	48517565	48517566	48517566	Splice_Site	G	T	e2+1
BRCA	TCGA-D8-A142-01	ENTPD1	ENST00000483213.1	chr10	97599447:97599565:97602100:97602251:97604232:97604310,97599447:97599565:97602100:97602251:97604311:97604392,	97602101	97602251	97602252	97602252	Splice_Site	G	A	e4+1
BRCA	TCGA-D8-A1XW-01	EWSR1	ENST00000447973.1	chr22	29669729:29669853:29670256:29670271:29674018:29674030,	29670257	29670271	29670255	29670255	Splice_Site	A	G	e5-2
BRCA	TCGA-A2-A0SX-01	FARP2	ENST00000545004.1,ENST00000373287.4	chr2	242295713:242295803:242312498:242312705:242343242:242343317,	242312499	242312705	242312707	242312707	Splice_Site	T	A	e1+2
BRCA	TCGA-BH-A203-01	FASN	ENST00000306749.2	chr17	80046844:80047048:80047125:80047260:80047507:80047602,	80047126	80047260	80047261	80047261	Splice_Site	C	A	e12-1
BRCA	TCGA-BH-A18P-01	FBXL2	ENST00000451636.1,ENST00000446237.3	chr3	33419594:33419639:33420176:33420326:33425480:33425693,	33420177	33420326	33420176	33420176	Splice_Site	G	C	e13-1
BRCA	TCGA-BH-A18P-01	FBXL2	ENST00000432809.1,ENST00000435207.1,ENST00000542085.1,ENST00000507198.1,ENST00000463736.1,ENST00000283627.6,ENST00000422741.1,ENST00000484457.1,ENST00000538892.1,ENST00000538181.1,ENST00000421391.1	chr3	33419594:33419639:33420176:33420233:33425480:33425693,	33420177	33420233	33420176	33420176	Splice_Site	G	C	e13-1
BRCA	TCGA-BH-A1ET-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047696	125047696	Splice_Site	G	A	e18+1
BRCA	TCGA-E2-A15O-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047696	125047696	Splice_Site	G	T	e18+1
BRCA	TCGA-E9-A1N5-01	FGG	ENST00000443553.1	chr4	155532956:155533050:155533169:155533319:155533542:155533587,	155533170	155533319	155533321	155533321	Splice_Site	T	A	e1-2
BRCA	TCGA-A2-A25B-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49168302:49168497:49170190:49170283:49175397:49175461,	49170191	49170283	49170190	49170190	Splice_Site	C	G	e18+1
BRCA	TCGA-AN-A0FL-01	FOXP3	ENST00000455775.2,ENST00000376207.4	chrX	49113883:49114022:49114120:49114225:49114752:49114901,	49114121	49114225	49114119	49114119	Splice_Site	A	G	e2+2
BRCA	TCGA-AO-A129-01	FRMPD2	ENST00000374201.3,ENST00000468556.1,ENST00000486151.1	chr10	49450203:49450395:49452826:49452892:49457063:49457221,	49452827	49452892	49452893	49452893	Splice_Site	C	G	e4-1
BRCA	TCGA-AR-A24X-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-C8-A26V-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-D8-A1X6-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-E9-A1NH-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-E9-A249-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-A2-A0CV-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-A8-A06T-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-A8-A083-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-AO-A12A-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-AR-A1AP-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-B6-A0WS-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-B6-A0X0-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-BH-A0BS-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-BH-A0DT-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-BH-A0EA-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-BH-A0H3-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-E2-A15J-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111433	8111434	Splice_Site	CA	-	e4-2
BRCA	TCGA-A8-A084-01	GBF1	ENST00000369983.3	chr10	104130463:104130617:104135115:104135341:104136028:104136189,	104135116	104135341	104135342	104135342	Splice_Site	G	A	e29+1
BRCA	TCGA-E2-A1LH-01	GBP4	ENST00000355754.6	chr1	89655720:89656001:89656943:89657189:89658586:89658783,	89656944	89657189	89656943	89656943	Splice_Site	C	T	e6+1
BRCA	TCGA-AR-A0TV-01	GCGR	ENST00000400723.3	chr17	79769279:79769436:79769526:79769686:79769761:79769822,	79769527	79769686	79769688	79769688	Splice_Site	T	G	e7+2
BRCA	TCGA-D8-A27T-01	GNPNAT1	ENST00000557604.1,ENST00000554230.1,ENST00000216410.3	chr14	53245092:53245176:53247396:53247458:53248501:53248629,	53247397	53247458	53247396	53247396	Splice_Site	C	A	e4+1
BRCA	TCGA-AN-A0AT-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000437809.1,ENST00000482386.1,ENST00000361040.5,ENST00000271883.5	chr1	155747412:155747611:155753776:155753880:155755124:155755165,	155753777	155753880	155753882	155753882	Splice_Site	T	G	e13-2
BRCA	TCGA-BH-A0BZ-01	GRAMD1B	ENST00000529750.1,ENST00000534764.1,ENST00000532581.1,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123474133:123474249:123476029:123476186:123477316:123477506,	123476030	123476186	123476187	123476187	Splice_Site	G	A	e9+1
BRCA	TCGA-A8-A096-01	GRHL2	ENST00000395927.1,ENST00000251808.3	chr8	102564942:102565010:102570646:102571040:102582566:102582622,	102570647	102571040	102571041	102571041	Splice_Site	G	T	e4+1
BRCA	TCGA-B6-A0WV-01	GSPT1	ENST00000565267.1,ENST00000568849.1,ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11984918:11984996:11988810:11988844:11990414:11990639,	11988811	11988844	11988808	11988809	Splice_Site	-	A	e5+2
BRCA	TCGA-A2-A0EY-01	GTF2E2	ENST00000518445.1,ENST00000523499.1,ENST00000355904.4,ENST00000518599.1	chr8	30469986:30469998:30472124:30472232:30492548:30492640,	30472125	30472232	30472233	30472233	Splice_Site	C	T	e3-1
BRCA	TCGA-EW-A1IW-01	GYG1	ENST00000345003.4,ENST00000296048.6,ENST00000483267.1,ENST00000461191.1,ENST00000484197.1,ENST00000492285.2	chr3	148711928:148712064:148714088:148714263:148714528:148714547,	148714089	148714263	148714088	148714088	Splice_Site	G	C	e3-1
BRCA	TCGA-EW-A1IW-01	GYG1	ENST00000478067.1	chr3	148711928:148712064:148714088:148714214:148714528:148714634,	148714089	148714214	148714088	148714088	Splice_Site	G	C	e3-1
BRCA	TCGA-B6-A0RP-01	HDAC1	ENST00000481281.1,ENST00000428704.1,ENST00000463172.1	chr1	32757761:32757819:32768221:32768334:32782265:32782383,	32768222	32768334	32768220	32768220	Splice_Site	A	G	e2-2
BRCA	TCGA-D8-A142-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000401921.1,ENST00000523867.1,ENST00000461159.2	chr7	18806728:18806778:18832967:18833075:18868783:18868839,	18832968	18833075	18833076	18833076	Splice_Site	G	T	e16+1
BRCA	TCGA-AN-A0XO-01	HSD17B13	ENST00000302219.6,ENST00000328546.4	chr4	88224940:88226460:88231394:88231511:88234974:88235112,	88231395	88231511	88231392	88231393	Splice_Site	-	A	e6+2
BRCA	TCGA-A8-A06N-01	HYDIN	ENST00000545230.1	chr16	71098607:71098743:71100685:71100836:71101192:71101293,	71100686	71100836	71100838	71100838	Splice_Site	T	C	e16-2
BRCA	TCGA-BH-A0HL-01	IFI35	ENST00000438323.2,ENST00000246911.2	chr17	41158824:41158985:41164195:41164294:41165063:41165211,	41164196	41164294	41164295	41164295	Splice_Site	G	A	e2+1
BRCA	TCGA-A2-A0T2-01	IL11RA	ENST00000556792.1,ENST00000478802.2,ENST00000441545.2,ENST00000602473.1,ENST00000378817.4,ENST00000318041.9,ENST00000555981.1,ENST00000555003.1,ENST00000556531.1	chr9	34655214:34655314:34655601:34655662:34657031:34657146,34655214:34655314:34655601:34655662:34656735:34656905,	34655602	34655662	34655600	34655600	Splice_Site	A	G	e2-2
BRCA	TCGA-C8-A1HI-01	IL20RB	ENST00000469964.1,ENST00000309741.5	chr3	136676850:136677043:136699172:136699434:136701001:136701192,	136699173	136699434	136699172	136699172	Splice_Site	G	A	e2-1
BRCA	TCGA-D8-A1JG-01	INPP4A	ENST00000409851.3,ENST00000523221.1,ENST00000074304.5	chr2	99172015:99172154:99175925:99175958:99179927:99180100,99172015:99172271:99175925:99175958:99179927:99180100,	99175926	99175958	99175925	99175925	Splice_Site	G	C	e16-1
BRCA	TCGA-AR-A0U1-01	ITGA8	ENST00000378076.3	chr10	15561288:15561411:15573048:15573150:15590453:15590567,	15573049	15573150	15573048	15573048	Splice_Site	C	A	e28+1
BRCA	TCGA-D8-A1Y1-01	JAG1	ENST00000254958.5	chr20	10639115:10639370:10644610:10644662:10653348:10653654,	10644611	10644662	10644610	10644610	Splice_Site	C	T	e3+1
BRCA	TCGA-BH-A1EY-01	JAK1	ENST00000342505.4	chr1	65306927:65307022:65307133:65307284:65309746:65309898,	65307134	65307284	65307285	65307285	Splice_Site	C	G	e17-1
BRCA	TCGA-BH-A1ET-01	KDM2A	ENST00000308783.5,ENST00000530342.1	chr11	66999235:66999431:67010479:67010563:67012659:67012929,67007771:67007840:67010479:67010563:67012659:67012929,	67010480	67010563	67010479	67010479	Splice_Site	G	T	e12-1
BRCA	TCGA-A2-A0D0-01	KHDRBS1	ENST00000484270.2,ENST00000307714.8,ENST00000327300.7,ENST00000492989.1	chr1	32498788:32498935:32502510:32502644:32503435:32503469,	32502511	32502644	32502510	32502510	Splice_Site	G	A	e5-1
BRCA	TCGA-AR-A1AH-01	KIAA1324L	ENST00000490995.1,ENST00000474609.1,ENST00000394714.2,ENST00000297222.6,ENST00000450689.2,ENST00000423294.1,ENST00000416314.1	chr7	86542341:86542520:86544038:86544176:86547757:86547860,	86544039	86544176	86544037	86544037	Splice_Site	A	G	e13+2
BRCA	TCGA-BH-A0W7-01	KIFAP3	ENST00000367767.1,ENST00000361580.2,ENST00000367765.1,ENST00000490550.1	chr1	170007430:170007572:170008373:170008429:170015852:170016007,	170008374	170008429	170008430	170008430	Splice_Site	C	G	e4-1
BRCA	TCGA-BH-A18P-01	KLHL30	ENST00000409223.1,ENST00000305959.4	chr2	239056474:239056663:239057647:239057793:239059454:239061547,	239057648	239057793	239057647	239057647	Splice_Site	G	A	e6-1
BRCA	TCGA-BH-A0HA-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21418744:21418842:21419748:21419893:21422358:21422454,	21419749	21419893	21419894	21419894	Splice_Site	G	T	e27+1
BRCA	TCGA-AR-A0TU-01	LAMA3	ENST00000586751.1,ENST00000313654.9,ENST00000269217.6,ENST00000588770.1	chr18	21479251:21479419:21481090:21481287:21482972:21483089,	21481091	21481287	21481288	21481288	Splice_Site	G	T	e48+1
BRCA	TCGA-BH-A0BZ-01	LAMB2	ENST00000418109.1,ENST00000305544.4,ENST00000488638.1	chr3	49163797:49163930:49165890:49166018:49166093:49166173,	49165891	49166018	49166019	49166019	Splice_Site	C	T	e15-1
BRCA	TCGA-A8-A06N-01	LCMT1	ENST00000380962.5	chr16	25123252:25123317:25137284:25137447:25139795:25139887,	25137285	25137447	25137449	25137449	Splice_Site	A	T	e1+2
BRCA	TCGA-E2-A14W-01	LETM1	ENST00000302787.2	chr4	1834470:1834674:1836571:1836709:1838155:1838299,	1836572	1836709	1836571	1836571	Splice_Site	C	A	e5+1
BRCA	TCGA-AR-A0TZ-01	LIAS	ENST00000261434.3,ENST00000513731.1,ENST00000381846.1	chr4	39472855:39472926:39474719:39474831:39478682:39478775,	39474720	39474831	39474832	39474832	Splice_Site	G	T	e10+1
BRCA	TCGA-BH-A0E2-01	LONP1	ENST00000590729.1	chr19	5707822:5707837:5708352:5708414:5711781:5711961,5707822:5707837:5708352:5708414:5711829:5712013,	5708353	5708414	5708352	5708352	Splice_Site	C	T	e5+1
BRCA	TCGA-D8-A1JJ-01	LZTFL1	ENST00000536047.1,ENST00000418700.1	chr3	45877161:45877276:45879418:45879543:45883480:45883493,45877161:45877276:45879418:45879543:45896477:45896566,	45879419	45879543	45879417	45879417	Splice_Site	A	C	e2+2
BRCA	TCGA-D8-A1JJ-01	LZTFL1	ENST00000445698.1	chr3	45877161:45877276:45879418:45879539:45883480:45883493,	45879419	45879539	45879417	45879417	Splice_Site	A	C	e2+2
BRCA	TCGA-BH-A1FG-01	MAMLD1	ENST00000432680.2	chrX	149531685:149531797:149613719:149613878:149631037:149631112,149531685:149531797:149613719:149613878:149638016:149638254,	149613720	149613878	149613879	149613879	Splice_Site	G	A	e1+1
BRCA	TCGA-AC-A23E-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984671	11984672	Splice_Site	AG	-	e3-1
BRCA	TCGA-B6-A0IB-01	MAP2K4	ENST00000602375.1	chr17	11924292:11924318:11958205:11958308:11998891:11999011,	11958206	11958308	11958309	11958310	Splice_Site	-	T	e2+1
BRCA	TCGA-E2-A1BC-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984671	11984672	Splice_Site	AG	-	e3-1
BRCA	TCGA-B6-A0RH-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602375.1,ENST00000582377.1,ENST00000602811.1,ENST00000582183.1,ENST00000579089.1,ENST00000602305.1,ENST00000581941.1,ENST00000602537.1	chr17	11998918:11999011:12011106:12011226:12013691:12013743,	12011107	12011226	12011227	12011228	Splice_Site	-	T	e5+1
BRCA	TCGA-A2-A0YI-01	MAP2K5	ENST00000354498.5,ENST00000439036.1,ENST00000560591.1,ENST00000395476.2,ENST00000178640.5	chr15	67855637:67855688:67873091:67873161:67878227:67878268,	67873092	67873161	67873162	67873162	Splice_Site	G	C	e4+1
BRCA	TCGA-E9-A1RD-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921444	57921444	Splice_Site	G	C	e6+1
BRCA	TCGA-BH-A18U-01	MCF2L	ENST00000375604.2,ENST00000421756.1,ENST00000375597.4,ENST00000535094.2,ENST00000409954.2,ENST00000397030.1,ENST00000434480.2,ENST00000375601.3,ENST00000423482.2,ENST00000375608.3,ENST00000442652.2	chr13	113679011:113679072:113699584:113699675:113714906:113715026,	113699585	113699675	113699676	113699676	Splice_Site	G	T	e4+1
BRCA	TCGA-D8-A1JK-01	MED20	ENST00000394251.2,ENST00000265350.4	chr6	41875004:41875025:41877006:41877260:41888742:41888831,41875004:41875025:41877006:41877260:41884522:41884677,	41877007	41877260	41877006	41877006	Splice_Site	C	A	e3+1
BRCA	TCGA-AO-A124-01	MEST	ENST00000223215.4,ENST00000437945.1,ENST00000341441.5,ENST00000393187.1,ENST00000462132.1	chr7	130140302:130140373:130140629:130140731:130142484:130142561,	130140630	130140731	130140628	130140628	Splice_Site	A	C	e9-2
BRCA	TCGA-C8-A12V-01	MFN1	ENST00000357390.4,ENST00000263969.5,ENST00000471841.1,ENST00000474903.1,ENST00000280653.7	chr3	179104220:179104417:179107791:179107926:179109768:179110284,	179107792	179107926	179107927	179107927	Splice_Site	G	T	e16+1
BRCA	TCGA-A2-A0EY-01	MFSD11	ENST00000355954.3,ENST00000588460.1,ENST00000593181.1,ENST00000590514.1,ENST00000336509.4,ENST00000588768.1,ENST00000586622.1,ENST00000585584.1,ENST00000588670.1	chr17	74750128:74750169:74763467:74763533:74765827:74765922,	74763468	74763533	74763467	74763467	Splice_Site	G	A	e9-1
BRCA	TCGA-AQ-A1H2-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135011832:135012215:135027956:135028121:135075099:135075176,	135027957	135028121	135028123	135028123	Splice_Site	T	G	e2+2
BRCA	TCGA-A7-A0DA-01	MGAT5B	ENST00000301618.4,ENST00000428789.2	chr17	74922678:74922812:74928726:74928857:74934069:74934225,	74928727	74928857	74928858	74928858	Splice_Site	G	T	e10+1
BRCA	TCGA-C8-A137-01	MRPS11	ENST00000559323.1,ENST00000353598.6,ENST00000325844.4,ENST00000560708.1,ENST00000557974.1,ENST00000558406.1	chr15	89018402:89018470:89020219:89020285:89021102:89021135,	89020220	89020285	89020219	89020219	Splice_Site	G	A	e5-1
BRCA	TCGA-D8-A1XC-01	MRPS30	ENST00000507110.1,ENST00000515647.1	chr5	44812086:44812122:44813207:44813384:44815014:44815168,	44813208	44813384	44813385	44813385	Splice_Site	G	A	e4+1
BRCA	TCGA-BH-A1FE-01	MST1	ENST00000494809.1,ENST00000484269.1,ENST00000383728.3	chr3	49723295:49723395:49723494:49723914:49724116:49724235,	49723495	49723914	49723916	49723916	Splice_Site	T	G	e8-2
BRCA	TCGA-BH-A1FE-01	MST1	ENST00000449682.2,ENST00000489007.1	chr3	49723494:49723625:49723745:49723914:49724116:49724235,	49723746	49723914	49723916	49723916	Splice_Site	T	G	e8-2
BRCA	TCGA-BH-A1FE-06	MST1	ENST00000494809.1,ENST00000484269.1,ENST00000383728.3	chr3	49723295:49723395:49723494:49723914:49724116:49724235,	49723495	49723914	49723916	49723916	Splice_Site	T	G	e8-2
BRCA	TCGA-BH-A1FE-06	MST1	ENST00000449682.2,ENST00000489007.1	chr3	49723494:49723625:49723745:49723914:49724116:49724235,	49723746	49723914	49723916	49723916	Splice_Site	T	G	e8-2
BRCA	TCGA-AN-A04C-01	MTHFD1	ENST00000554739.1,ENST00000555709.2,ENST00000545908.1,ENST00000554768.1,ENST00000557539.1,ENST00000216605.8	chr14	64877807:64877867:64879189:64879243:64882075:64882147,	64879190	64879243	64879189	64879189	Splice_Site	G	A	e4-1
BRCA	TCGA-BH-A1FN-01	MTX2	ENST00000423461.2	chr2	177162576:177162623:177188119:177188192:177191552:177191629,177168968:177169093:177188119:177188192:177191552:177191629,	177188120	177188192	177188193	177188193	Splice_Site	G	A	e4+1
BRCA	TCGA-E2-A1B4-01	MYBBP1A	ENST00000573116.1,ENST00000381556.2,ENST00000254718.4	chr17	4448320:4448470:4448553:4448640:4448904:4449056,	4448554	4448640	4448552	4448552	Splice_Site	A	C	e16+2
BRCA	TCGA-E2-A1L7-01	MYH11	ENST00000452625.2,ENST00000396324.3	chr16	15876241:15876334:15878554:15878575:15880486:15880589,	15878555	15878575	15878554	15878554	Splice_Site	C	T	e5+1
BRCA	TCGA-AN-A0XU-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46072992	46072992	Splice_Site	G	C	e6-1
BRCA	TCGA-BH-A1EN-01	NBPF1	ENST00000430580.2	chr1	16918341:16918551:16918653:16918808:16919935:16920062,	16918654	16918808	16918653	16918653	Splice_Site	C	T	e0+1
BRCA	TCGA-AR-A0TT-01	NCOR1	ENST00000460276.1	chr17	16068292:16068475:16075116:16075334:16089867:16090001,	16075117	16075334	16075115	16075115	Splice_Site	A	G	e3+2
BRCA	TCGA-AR-A0TT-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000436828.1,ENST00000395851.1,ENST00000585296.1,ENST00000268712.3	chr17	16068292:16068475:16075116:16075309:16089867:16090001,	16075117	16075309	16075115	16075115	Splice_Site	A	G	e3+2
BRCA	TCGA-E9-A1N8-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000349945.1,ENST00000393742.2,ENST00000565301.1,ENST00000426654.2,ENST00000567239.1	chr16	69727988:69728142:69729038:69729282:69730262:69730481,	69729039	69729282	69729284	69729284	Splice_Site	T	G	e14+2
BRCA	TCGA-E2-A10C-01	NFAT5	ENST00000567239.1	chr16	69711105:69711238:69718792:69718873:69724842:69724879,	69718793	69718873	69718792	69718792	Splice_Site	G	T	e11-1
BRCA	TCGA-BH-A0EE-01	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1	chr19	55497659:55497683:55501389:55501560:55501869:55502040,	55501390	55501560	55501561	55501561	Splice_Site	G	A	e8+1
BRCA	TCGA-AR-A0TT-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000346562.2,ENST00000357798.5,ENST00000548645.1,ENST00000552874.1	chr14	34204446:34204538:34243542:34243736:34247671:34247778,	34243543	34243736	34243738	34243738	Splice_Site	T	C	e8+2
BRCA	TCGA-A8-A09N-01	NTRK3	ENST00000317501.3,ENST00000540489.2,ENST00000542733.2,ENST00000355254.2,ENST00000394480.2,ENST00000360948.2	chr15	88670392:88670457:88671941:88671965:88678331:88678628,	88671942	88671965	88671941	88671941	Splice_Site	C	A	e9+1
BRCA	TCGA-AN-A0FW-01	NUP188	ENST00000372577.2,ENST00000477069.1	chr9	131760429:131760507:131760816:131760902:131761450:131761596,	131760817	131760902	131760904	131760904	Splice_Site	T	A	e32+2
BRCA	TCGA-A8-A06U-01	OCIAD1	ENST00000508996.1,ENST00000512236.1,ENST00000514981.1,ENST00000507210.1,ENST00000444354.2,ENST00000511102.1,ENST00000508293.1,ENST00000509664.1,ENST00000396448.2,ENST00000509164.1,ENST00000425583.2,ENST00000509963.1,ENST00000513391.2,ENST00000264312.7,ENST00000504654.1,ENST00000507546.1,ENST00000381473.3	chr4	48833243:48833266:48835417:48835498:48844652:48844706,48834641:48834699:48835417:48835498:48844652:48844706,	48835418	48835498	48835499	48835499	Splice_Site	G	A	e2+1
BRCA	TCGA-EW-A1J5-01	OS9	ENST00000315970.7,ENST00000547079.1,ENST00000435406.2,ENST00000257966.8,ENST00000413095.2,ENST00000389146.6,ENST00000551035.1,ENST00000389142.5,ENST00000553208.1,ENST00000550793.1,ENST00000552787.1	chr12	58087942:58088106:58088532:58088709:58089562:58089626,	58088533	58088709	58088532	58088532	Splice_Site	G	A	e2-1
BRCA	TCGA-A8-A07W-01	PCSK7	ENST00000525027.1,ENST00000320934.3	chr11	117096646:117096737:117097872:117098038:117098931:117099066,	117097873	117098038	117098039	117098039	Splice_Site	C	T	e3-1
BRCA	TCGA-BH-A0DZ-01	PDE9A	ENST00000335440.6,ENST00000468805.1,ENST00000380328.2,ENST00000349112.3	chr21	44119077:44119121:44153465:44153536:44163885:44163970,	44153466	44153536	44153465	44153465	Splice_Site	G	A	e7-1
BRCA	TCGA-A2-A0YM-01	PEX6	ENST00000304611.8	chr6	42933781:42933843:42933979:42934185:42934262:42934395,	42933980	42934185	42934186	42934186	Splice_Site	C	T	e11-1
BRCA	TCGA-A2-A04P-01	PGLS	ENST00000252603.2,ENST00000594761.1,ENST00000598811.1	chr19	17628096:17628198:17628518:17628659:17631752:17631839,	17628519	17628659	17628661	17628661	Splice_Site	T	A	e4+2
BRCA	TCGA-AR-A24Q-01	PHKA2	ENST00000379942.4	chrX	18959646:18959793:18961827:18961926:18963195:18963276,	18961828	18961926	18961827	18961827	Splice_Site	C	T	e7+1
BRCA	TCGA-BH-A18V-01	PHKA2	ENST00000379942.4,ENST00000473739.1	chrX	18917290:18917344:18918787:18918817:18919602:18919721,	18918788	18918817	18918818	18918818	Splice_Site	C	G	e28-1
BRCA	TCGA-BH-A0DK-01	PHTF2	ENST00000307305.8,ENST00000415251.2,ENST00000275575.7,ENST00000424760.1	chr7	77428217:77428288:77469537:77469617:77522924:77522981,	77469538	77469617	77469618	77469619	Splice_Site	-	T	e1+1
BRCA	TCGA-A8-A092-01	PID1	ENST00000392055.3	chr2	229890751:229890824:230020533:230020680:230135729:230135955,	230020534	230020680	230020681	230020681	Splice_Site	C	T	e2-1
BRCA	TCGA-AN-A0FT-01	PLA2G4A	ENST00000466600.1	chr1	186876096:186876134:186880379:186880521:186901894:186902031,186876096:186876134:186880379:186880521:186908139:186908362,	186880380	186880521	186880523	186880523	Splice_Site	T	A	e6+2
BRCA	TCGA-BH-A0DH-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000373272.2	chr20	39795318:39795499:39796491:39796569:39797406:39797510,	39796492	39796569	39796490	39796490	Splice_Site	A	G	e20-2
BRCA	TCGA-B6-A0IM-01	PNCK	ENST00000488994.1,ENST00000411968.1,ENST00000370142.1,ENST00000422811.1,ENST00000393831.2,ENST00000433470.1,ENST00000447676.2,ENST00000370150.1,ENST00000340888.3,ENST00000439087.1,ENST00000370145.4,ENST00000489536.1,ENST00000466638.1	chrX	152937007:152937127:152937334:152937473:152937580:152937655,	152937335	152937473	152937334	152937334	Splice_Site	C	A	e5+1
BRCA	TCGA-A2-A04R-01	POLH	ENST00000535400.1,ENST00000372236.4	chr6	43572990:43573056:43578290:43578460:43581396:43582458,	43578291	43578460	43578461	43578461	Splice_Site	G	T	e9+1
BRCA	TCGA-A2-A0T0-01	POLR1B	ENST00000541869.1,ENST00000537335.1,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113316869:113317151:113321942:113322076:113325543:113325714,	113321943	113322076	113321941	113321941	Splice_Site	A	G	e10-2
BRCA	TCGA-AN-A0AM-01	PPIB	ENST00000561048.1	chr15	64452311:64452396:64454239:64454353:64455050:64455205,	64454240	64454353	64454237	64454238	Splice_Site	-	A	e2+2
BRCA	TCGA-AR-A0U2-01	PPP2R5C	ENST00000334743.5,ENST00000557268.1,ENST00000422945.2	chr14	102378737:102378810:102384167:102384284:102387429:102387719,102378739:102378810:102384167:102384284:102391477:102391644,	102384168	102384284	102384167	102384167	Splice_Site	G	A	e13-1
BRCA	TCGA-B6-A0RL-01	PQBP1	ENST00000470062.1,ENST00000472742.1	chrX	48759232:48759319:48759509:48759661:48760008:48760070,	48759510	48759661	48759509	48759509	Splice_Site	G	C	e4-1
BRCA	TCGA-B6-A0RL-01	PQBP1	ENST00000443648.1,ENST00000447146.2,ENST00000473764.1,ENST00000396763.1,ENST00000477997.1,ENST00000474671.1,ENST00000376563.1,ENST00000218224.4	chrX	48759232:48759319:48759509:48759794:48760008:48760070,	48759510	48759794	48759509	48759509	Splice_Site	G	C	e4-1
BRCA	TCGA-E9-A1RC-01	PRKCD	ENST00000394729.2,ENST00000330452.3	chr3	53222735:53222874:53223073:53223262:53223888:53224017,	53223074	53223262	53223073	53223073	Splice_Site	G	C	e15-1
BRCA	TCGA-E2-A1IH-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000487363.1,ENST00000397519.2	chr9	15486824:15486929:15489983:15490122:15506558:15506635,	15489984	15490122	15489983	15489983	Splice_Site	C	A	e3+1
BRCA	TCGA-A2-A0EQ-01	PSMA3	ENST00000555931.1	chr14	58724642:58724716:58727676:58727738:58730422:58730488,	58727677	58727738	58727739	58727739	Splice_Site	G	A	e6+1
BRCA	TCGA-A2-A0EQ-01	PSMA3	ENST00000557087.1,ENST00000557508.1,ENST00000554812.1,ENST00000555743.1,ENST00000216455.4	chr14	58724642:58724716:58727665:58727738:58730422:58730488,	58727666	58727738	58727739	58727739	Splice_Site	G	A	e6+1
BRCA	TCGA-A2-A0EQ-01	PSMA3	ENST00000412908.2	chr14	58724642:58724716:58727686:58727738:58730422:58730488,	58727687	58727738	58727739	58727739	Splice_Site	G	A	e6+1
BRCA	TCGA-BH-A0E9-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685316	89685316	Splice_Site	T	-	e3+2
BRCA	TCGA-B6-A0IB-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711873	89711873	Splice_Site	A	G	e6-2
BRCA	TCGA-BH-A0HP-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712018	89712018	Splice_Site	T	C	e6+2
BRCA	TCGA-E2-A14T-01	PTMS	ENST00000389462.4,ENST00000540828.2,ENST00000540667.1,ENST00000309083.6,ENST00000538057.1	chr12	6879089:6879165:6879322:6879384:6879557:6879570,	6879323	6879384	6879322	6879322	Splice_Site	G	C	e4-1
BRCA	TCGA-AR-A1AY-01	PTPRE	ENST00000442830.1,ENST00000254667.3	chr10	129796389:129798225:129839138:129839254:129845653:129845753,129780537:129780560:129839138:129839254:129845653:129845753,	129839139	129839254	129839137	129839137	Splice_Site	A	T	e1-2
BRCA	TCGA-EW-A1OY-01	RAB37	ENST00000392614.4	chr17	72733409:72733504:72736906:72737017:72738392:72738434,72733055:72733256:72736906:72737017:72738392:72738434,	72736907	72737017	72736906	72736906	Splice_Site	G	T	e2-1
BRCA	TCGA-C8-A1HM-01	RAB3A	ENST00000464076.3,ENST00000222256.4	chr19	18307608:18308470:18309534:18309659:18311136:18311255,	18309535	18309659	18309660	18309660	Splice_Site	C	G	e3-1
BRCA	TCGA-C8-A12Y-01	RAB3GAP1	ENST00000264158.8,ENST00000442034.1	chr2	135815580:135815656:135848567:135848700:135851184:135851263,	135848568	135848700	135848702	135848702	Splice_Site	T	C	e4+2
BRCA	TCGA-C8-A12M-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86667934:86668012:86669979:86670137:86670656:86670733,	86669980	86670137	86670139	86670140	Splice_Site	-	A	e14+2
BRCA	TCGA-A7-A13G-01	RBBP6	ENST00000348022.2,ENST00000381039.3,ENST00000568015.1,ENST00000567686.1,ENST00000319715.4	chr16	24560265:24560302:24564833:24564878:24566935:24567024,	24564834	24564878	24564880	24564881	Splice_Site	TA	-	e4+2
BRCA	TCGA-AC-A23C-01	RBBP7	ENST00000425696.1,ENST00000380084.4,ENST00000404022.1,ENST00000330735.3,ENST00000380087.2	chrX	16863150:16863226:16863950:16864061:16867366:16867424,	16863951	16864061	16863950	16863950	Splice_Site	C	A	e11+1
BRCA	TCGA-A2-A0YF-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171595	36171596	Splice_Site	-	A	e7+2
BRCA	TCGA-D8-A141-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252853	36252853	Splice_Site	C	G	e4+1
BRCA	TCGA-BH-A0HQ-01	RUNX1	ENST00000455571.1	chr21	36252902:36253010:36259139:36259393:36265221:36265260,36252902:36253010:36259139:36259393:36421138:36421255,	36259140	36259393	36259138	36259139	Splice_Site	-	C	e3+1
BRCA	TCGA-BH-A0WA-01	SAAL1	ENST00000529318.1,ENST00000524803.1,ENST00000300013.4,ENST00000533851.1,ENST00000530736.1,ENST00000530180.1,ENST00000531581.1	chr11	18118317:18118401:18124779:18124893:18127453:18127566,	18124780	18124893	18124894	18124894	Splice_Site	C	T	e2-1
BRCA	TCGA-E2-A10C-01	SCPEP1	ENST00000570480.1,ENST00000575395.1,ENST00000571898.1,ENST00000575423.1,ENST00000576154.1,ENST00000262288.3,ENST00000570589.1,ENST00000572710.1,ENST00000571345.1,ENST00000573789.1	chr17	55065112:55065211:55065576:55065651:55068459:55068532,	55065577	55065651	55065576	55065576	Splice_Site	G	C	e5-1
BRCA	TCGA-AN-A0XW-01	SEMA6D	ENST00000354744.4,ENST00000389432.2	chr15	48058812:48058874:48059233:48059290:48060777:48060812,48058812:48058874:48059233:48059290:48062693:48062962,	48059234	48059290	48059233	48059233	Splice_Site	G	C	e16-1
BRCA	TCGA-BH-A0HU-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000355814.4,ENST00000449399.3,ENST00000393087.4,ENST00000440909.1	chr14	94844881:94844977:94845800:94845948:94847207:94847478,	94845801	94845948	94845800	94845800	Splice_Site	C	T	e3+1
BRCA	TCGA-C8-A1HI-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100775155:100775350:100776975:100777174:100778774:100778875,	100776976	100777174	100777176	100777176	Splice_Site	T	C	e4+2
BRCA	TCGA-A8-A095-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135209994:135210114:135211682:135211902:135218076:135218186,	135211683	135211902	135211682	135211682	Splice_Site	C	A	e4+1
BRCA	TCGA-AR-A24Z-01	SFTPC	ENST00000521315.1,ENST00000523296.1	chr8	22020592:22020715:22020948:22021059:22021395:22021425,22020592:22020715:22020948:22021059:22021413:22021425,	22020949	22021059	22021060	22021061	Splice_Site	GT	-	e4+1
BRCA	TCGA-A8-A08A-01	SFTPC	ENST00000521315.1,ENST00000523296.1	chr8	22020592:22020715:22020948:22021059:22021395:22021425,22020592:22020715:22020948:22021059:22021413:22021425,	22020949	22021059	22021060	22021061	Splice_Site	GT	-	e4+1
BRCA	TCGA-A2-A0T0-01	SFXN5	ENST00000272433.2,ENST00000463277.1,ENST00000474528.1	chr2	73198698:73198814:73215386:73215477:73226077:73226143,	73215387	73215477	73215386	73215386	Splice_Site	C	T	e10+1
BRCA	TCGA-BH-A0HP-01	SIK3	ENST00000375300.1,ENST00000375288.1,ENST00000542607.1,ENST00000497049.1,ENST00000413553.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116767908:116768033:116797934:116798096:116824759:116824823,	116797935	116798096	116798097	116798097	Splice_Site	C	A	e4-1
BRCA	TCGA-A1-A0SH-01	SLC17A4	ENST00000377905.4	chr6	25773740:25773902:25776822:25776955:25777039:25777187,	25776823	25776955	25776822	25776822	Splice_Site	G	C	e8-1
BRCA	TCGA-A1-A0SH-01	SLC17A4	ENST00000397076.2	chr6	25773772:25773902:25776822:25778016:25778153:25778244,	25776823	25778016	25776822	25776822	Splice_Site	G	C	e8-1
BRCA	TCGA-AN-A0XU-01	SLC17A5	ENST00000355773.5	chr6	74310145:74310164:74320122:74320270:74325037:74325170,	74320123	74320270	74320122	74320122	Splice_Site	C	T	e9+1
BRCA	TCGA-AN-A0XP-01	SLC1A4	ENST00000480594.1,ENST00000234256.3	chr2	65237730:65237897:65243573:65243807:65245204:65245261,	65243574	65243807	65243809	65243809	Splice_Site	T	C	e5+2
BRCA	TCGA-AR-A24N-01	SLC22A9	ENST00000279178.3	chr11	63138606:63138710:63141115:63141270:63141365:63141534,	63141116	63141270	63141114	63141114	Splice_Site	A	T	e3-2
BRCA	TCGA-C8-A12Y-01	SLC35D2	ENST00000482643.1,ENST00000253270.7,ENST00000375259.4,ENST00000375257.1	chr9	99122435:99122503:99126745:99126832:99130553:99130587,	99126746	99126832	99126743	99126744	Splice_Site	-	A	e3+2
BRCA	TCGA-BH-A209-01	SLC6A9	ENST00000372310.3,ENST00000372306.3	chr1	44475636:44475768:44476397:44476554:44482718:44482811,44475636:44475768:44476397:44476554:44489919:44490034,	44476398	44476554	44476555	44476555	Splice_Site	C	T	e3-1
BRCA	TCGA-BH-A209-01	SLC6A9	ENST00000492434.2	chr1	44475636:44475768:44476480:44476554:44489919:44490034,	44476481	44476554	44476555	44476555	Splice_Site	C	T	e3-1
BRCA	TCGA-AO-A1KP-01	SLC9A5	ENST00000299798.11	chr16	67289295:67289374:67289655:67289833:67290371:67290381,	67289656	67289833	67289834	67289834	Splice_Site	G	A	e5+1
BRCA	TCGA-AO-A1KP-01	SLC9A5	ENST00000563723.1,ENST00000564704.1	chr16	67288937:67289087:67289295:67289833:67290371:67290381,	67289296	67289833	67289834	67289834	Splice_Site	G	A	e5+1
BRCA	TCGA-E2-A1IH-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128649899:128649971:128650307:128650474:128652337:128652424,	128650308	128650474	128650475	128650475	Splice_Site	C	G	e3-1
BRCA	TCGA-A2-A0CU-01	SNX25	ENST00000512853.1	chr4	186272598:186272763:186274638:186274756:186278824:186278891,186267690:186267804:186274638:186274756:186278824:186278891,	186274639	186274756	186274637	186274637	Splice_Site	A	T	e14-2
BRCA	TCGA-BH-A0HK-01	SNX5	ENST00000419004.1,ENST00000377768.3,ENST00000377759.4,ENST00000483485.1,ENST00000490175.1	chr20	17933230:17933354:17934639:17934761:17936008:17936119,	17934640	17934761	17934762	17934762	Splice_Site	C	A	e4-1
BRCA	TCGA-E2-A14V-01	SPEF2	ENST00000303129.4,ENST00000506526.1,ENST00000513078.1,ENST00000440995.2,ENST00000356031.3	chr5	35795804:35795897:35800069:35800249:35806808:35807054,	35800070	35800249	35800068	35800068	Splice_Site	A	T	e34-2
BRCA	TCGA-BH-A0AV-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44903037:44903183:44905627:44905734:44907560:44907764,	44905628	44905734	44905735	44905735	Splice_Site	C	A	e17-1
BRCA	TCGA-BH-A0DD-01	STAG1	ENST00000465961.1,ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136067999:136068205:136076561:136076690:136077989:136078031,	136076562	136076690	136076560	136076560	Splice_Site	A	G	e27+2
BRCA	TCGA-A2-A0CX-01	STAM	ENST00000540523.1	chr10	17686263:17686378:17702462:17702547:17730025:17730156,	17702463	17702547	17702462	17702462	Splice_Site	G	C	e2-1
BRCA	TCGA-AN-A0XN-01	STAMBPL1	ENST00000371927.3,ENST00000371926.3,ENST00000371924.1	chr10	90670672:90670768:90672857:90673215:90674290:90674415,	90672858	90673215	90672857	90672857	Splice_Site	G	T	e5-1
BRCA	TCGA-E9-A22D-01	STARD8	ENST00000374597.3,ENST00000374599.3	chrX	67932758:67932827:67935135:67935217:67936209:67936273,	67935136	67935217	67935135	67935135	Splice_Site	G	C	e4-1
BRCA	TCGA-C8-A12T-01	STAT5B	ENST00000468312.1,ENST00000293328.3,ENST00000415845.1	chr17	40375480:40375574:40376796:40376886:40379546:40379703,	40376797	40376886	40376887	40376887	Splice_Site	C	T	e3-1
BRCA	TCGA-A7-A0CJ-01	STX16	ENST00000361770.5	chr20	57226327:57227143:57242345:57242357:57242545:57242653,	57242346	57242357	57242358	57242358	Splice_Site	G	C	e2+1
BRCA	TCGA-AN-A0XU-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467482	58467482	Splice_Site	C	A	e22-1
BRCA	TCGA-A8-A0A7-01	SYMPK	ENST00000593504.1,ENST00000598896.1,ENST00000600237.1,ENST00000245934.7,ENST00000593899.1,ENST00000599814.1,ENST00000599460.1	chr19	46338353:46338486:46341718:46341873:46345507:46345747,	46341719	46341873	46341874	46341874	Splice_Site	C	G	e9-1
BRCA	TCGA-EW-A1IW-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152565671:152565791:152570295:152570397:152576014:152576224,	152570296	152570397	152570399	152570399	Splice_Site	T	C	e103-2
BRCA	TCGA-AR-A256-01	SYNPR	ENST00000478300.1	chr3	63264352:63264418:63466507:63466632:63542218:63542417,	63466508	63466632	63466633	63466633	Splice_Site	G	A	e3+1
BRCA	TCGA-E2-A108-01	SYT6	ENST00000609117.1,ENST00000610096.1,ENST00000369547.1,ENST00000607941.1,ENST00000393296.1,ENST00000610222.1	chr1	114636380:114636425:114640348:114640499:114641715:114641887,	114640349	114640499	114640500	114640500	Splice_Site	C	T	e5-1
BRCA	TCGA-E2-A15A-01	TAOK3	ENST00000537305.1,ENST00000537952.1,ENST00000419821.2,ENST00000392533.3	chr12	118615005:118615134:118619175:118619412:118627611:118627746,	118619176	118619412	118619174	118619174	Splice_Site	A	C	e13+2
BRCA	TCGA-E2-A15A-06	TAOK3	ENST00000537305.1,ENST00000537952.1,ENST00000419821.2,ENST00000392533.3	chr12	118615005:118615134:118619175:118619412:118627611:118627746,	118619176	118619412	118619174	118619174	Splice_Site	A	C	e13+2
BRCA	TCGA-B6-A0RT-01	TARBP1	ENST00000040877.1	chr1	234563321:234563512:234564881:234565070:234565161:234565423,	234564882	234565070	234565071	234565071	Splice_Site	C	A	e17-1
BRCA	TCGA-BH-A0HP-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000397991.4,ENST00000317104.7,ENST00000489671.1,ENST00000467072.1,ENST00000479040.1,ENST00000486111.1,ENST00000495310.1,ENST00000310282.6,ENST00000477292.1	chr3	141671344:141671538:141671752:141671858:141678515:141678682,	141671753	141671858	141671859	141671859	Splice_Site	C	G	e9-1
BRCA	TCGA-E2-A159-01	TFR2	ENST00000465294.1,ENST00000462107.1,ENST00000431692.1,ENST00000474947.1	chr7	100238308:100238495:100238598:100238851:100239099:100239137,	100238599	100238851	100238598	100238598	Splice_Site	C	A	e2+1
BRCA	TCGA-BH-A0B3-01	TMEM106B	ENST00000396668.3,ENST00000396667.3,ENST00000444443.1	chr7	12254434:12254653:12258083:12258147:12263851:12263900,	12258084	12258147	12258148	12258148	Splice_Site	G	A	e2+1
BRCA	TCGA-E2-A14R-01	TMEM108	ENST00000393130.3,ENST00000511388.1,ENST00000321871.6	chr3	133098595:133100005:133109023:133109178:133114707:133115036,	133109024	133109178	133109180	133109180	Splice_Site	T	A	e3+2
BRCA	TCGA-B6-A0I9-01	TMEM182	ENST00000486293.1	chr2	103380787:103380886:103414321:103414459:103431206:103431563,103380787:103380886:103414321:103414459:103459870:103460352,	103414322	103414459	103414461	103414461	Splice_Site	T	C	e4+2
BRCA	TCGA-A7-A13D-01	TMEM220	ENST00000341871.3	chr17	10629520:10629581:10632347:10632377:10633096:10633303,	10632348	10632377	10632347	10632347	Splice_Site	C	A	e2+1
BRCA	TCGA-BH-A0WA-01	TNNT3	ENST00000278317.6,ENST00000397301.1	chr11	1946485:1946506:1950349:1950373:1951039:1951058,1947924:1947939:1950349:1950373:1951039:1951058,	1950350	1950373	1950349	1950349	Splice_Site	G	A	e6-1
BRCA	TCGA-A8-A09B-01	TNRC6B	ENST00000335727.9	chr22	40661006:40663040:40669428:40669604:40673080:40673155,	40669429	40669604	40669427	40669428	Splice_Site	-	T	e6-1
BRCA	TCGA-EW-A1J2-01	TNXB	ENST00000375247.2,ENST00000498094.1,ENST00000451343.1,ENST00000490077.1,ENST00000375244.3	chr6	32010042:32010139:32010231:32010383:32010475:32010608,	32010232	32010383	32010230	32010230	Splice_Site	A	C	e39+2
BRCA	TCGA-D8-A1JK-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	T	e8+1
BRCA	TCGA-BH-A208-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	G	e5-1
BRCA	TCGA-D8-A143-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576851	7576851	Splice_Site	A	C	e8+2
BRCA	TCGA-B6-A0X1-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	A	e8+1
BRCA	TCGA-B6-A0IE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577018	7577018	Splice_Site	C	T	e7+1
BRCA	TCGA-A8-A09Q-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578175	7578175	Splice_Site	A	T	e5+2
BRCA	TCGA-BH-A0B7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	T	e5-1
BRCA	TCGA-A2-A0YG-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	A	e3+1
BRCA	TCGA-A8-A07O-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	T	e3+1
BRCA	TCGA-E2-A155-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579591	7579591	Splice_Site	C	G	e3-1
BRCA	TCGA-AO-A03O-01	TRA2B	ENST00000382191.4,ENST00000487615.1,ENST00000453386.2,ENST00000492417.1,ENST00000456380.1	chr3	185639830:185639914:185641583:185641772:185643251:185643414,	185641584	185641772	185641773	185641773	Splice_Site	C	G	e4-1
BRCA	TCGA-A2-A0YD-01	TRAPPC2L	ENST00000561840.1	chr16	88925752:88925851:88925980:88926158:88926300:88926380,88925049:88925197:88925980:88926158:88926300:88926380,	88925981	88926158	88926159	88926159	Splice_Site	G	A	e3+1
BRCA	TCGA-A2-A0YD-01	TRAPPC2L	ENST00000564404.1,ENST00000565205.1	chr16	88925049:88925197:88925752:88926158:88926300:88926380,	88925753	88926158	88926159	88926159	Splice_Site	G	A	e3+1
BRCA	TCGA-E9-A1R3-01	TSPAN16	ENST00000316737.1,ENST00000590327.1,ENST00000337994.5	chr19	11408817:11409015:11409547:11409622:11411876:11411984,	11409548	11409622	11409546	11409546	Splice_Site	A	C	e3-2
BRCA	TCGA-BH-A1EO-01	TSPAN17	ENST00000310032.8,ENST00000405525.2,ENST00000514705.1,ENST00000515708.1,ENST00000508164.1,ENST00000503030.1	chr5	176078616:176078667:176078754:176078901:176079743:176079914,	176078755	176078901	176078754	176078754	Splice_Site	G	A	e3-1
BRCA	TCGA-E2-A1LG-01	TSPAN8	ENST00000247829.3,ENST00000552128.1,ENST00000546561.1,ENST00000393330.2	chr12	71518932:71519167:71523110:71523194:71526472:71526604,	71523111	71523194	71523195	71523195	Splice_Site	C	T	e7-1
BRCA	TCGA-AC-A23C-01	TTC37	ENST00000507805.1,ENST00000506007.1,ENST00000358746.2,ENST00000508181.1	chr5	94850558:94850627:94852056:94852113:94852228:94852290,	94852057	94852113	94852114	94852114	Splice_Site	C	A	e22-1
BRCA	TCGA-BH-A18Q-01	TULP4	ENST00000367097.3,ENST00000367094.2	chr6	158914604:158914749:158915784:158915878:158919700:158919844,	158915785	158915878	158915879	158915879	Splice_Site	G	T	e11+1
BRCA	TCGA-BH-A0HX-01	UNC5D	ENST00000404895.2,ENST00000287272.2,ENST00000453357.2	chr8	35544062:35544227:35563446:35563479:35579727:35579874,	35563447	35563479	35563480	35563480	Splice_Site	G	T	e8+1
BRCA	TCGA-AO-A0J6-01	USF1	ENST00000435396.1,ENST00000473969.2	chr1	161011623:161011636:161011905:161012007:161012344:161012460,161011623:161011636:161011905:161012007:161012375:161012460,	161011906	161012007	161011904	161011904	Splice_Site	A	C	e4+2
BRCA	TCGA-BH-A0W7-01	USP13	ENST00000263966.3,ENST00000496897.1	chr3	179472540:179472642:179474839:179474866:179478899:179478939,	179474840	179474866	179474867	179474867	Splice_Site	G	T	e16+1
BRCA	TCGA-D8-A1JC-01	USP39	ENST00000491659.1	chr2	85846342:85846412:85848329:85848449:85848607:85848627,	85848330	85848449	85848451	85848451	Splice_Site	T	G	NULL
BRCA	TCGA-D8-A27N-01	USP42	ENST00000306177.5,ENST00000521713.1,ENST00000479544.2	chr7	6154953:6155154:6175471:6175582:6178722:6178825,	6175472	6175582	6175584	6175584	Splice_Site	T	A	e3+2
BRCA	TCGA-BH-A0W4-01	VCAM1	ENST00000347652.2	chr1	101190179:101190446:101196753:101197074:101197973:101198240,	101196754	101197074	101196752	101196752	Splice_Site	A	G	e6-2
BRCA	TCGA-A2-A0YG-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815167	82815167	Splice_Site	G	C	e6-1
BRCA	TCGA-AR-A251-01	VPS13D	ENST00000356315.4,ENST00000496628.1,ENST00000011700.6,ENST00000358136.3	chr1	12445318:12445432:12446243:12446393:12460237:12460387,	12446244	12446393	12446242	12446242	Splice_Site	A	G	e59-2
BRCA	TCGA-AO-A0JD-01	VRK3	ENST00000596814.1,ENST00000377011.2,ENST00000601341.1,ENST00000600137.1,ENST00000601912.1,ENST00000443401.2	chr19	50504046:50504111:50510825:50511083:50519280:50519420,	50510826	50511083	50510825	50510825	Splice_Site	C	A	e3+1
BRCA	TCGA-E2-A1IG-01	WRB	ENST00000487869.1,ENST00000541890.1	chr21	40759716:40759781:40762623:40762789:40763694:40763762,40752339:40752412:40762623:40762789:40763694:40763762,	40762624	40762789	40762623	40762637	Splice_Site	GATGTCCAGGGTGCT	-	e2-1
BRCA	TCGA-E2-A1IG-01	WRB	ENST00000466787.1	chr21	40759716:40759781:40762623:40763402:40763694:40763762,	40762624	40763402	40762623	40762637	Splice_Site	GATGTCCAGGGTGCT	-	e2-1
BRCA	TCGA-E2-A1LH-01	XRRA1	ENST00000321448.8	chr11	74570211:74570328:74574025:74574066:74617283:74617397,74563078:74563127:74574025:74574066:74617283:74617397,	74574026	74574066	74574068	74574068	Splice_Site	T	C	e9-2
BRCA	TCGA-BH-A1FC-01	YIPF6	ENST00000374643.3,ENST00000374622.2,ENST00000451537.1,ENST00000462683.1	chrX	67733168:67733247:67738611:67738654:67741213:67741339,	67738612	67738654	67738655	67738655	Splice_Site	G	T	e4+1
BRCA	TCGA-E2-A15G-01	YY1AP1	ENST00000436865.1	chr1	155646338:155646537:155648948:155649104:155649199:155649255,	155648949	155649104	155649105	155649105	Splice_Site	C	G	e3-1
BRCA	TCGA-D8-A27N-01	ZDHHC18	ENST00000534643.1,ENST00000374142.4,ENST00000374141.2	chr1	27175098:27175248:27176791:27176929:27177048:27177097,	27176792	27176929	27176930	27176930	Splice_Site	G	A	e4+1
BRCA	TCGA-EW-A1PD-01	ZMIZ2	ENST00000309315.4,ENST00000478045.1,ENST00000433667.1,ENST00000413916.1,ENST00000441627.1,ENST00000463056.1,ENST00000265346.7	chr7	44804933:44805178:44805762:44805932:44806019:44806153,	44805763	44805932	44805751	44805761	Splice_Site	CTCCTCTCACA	-	e16-2
BRCA	TCGA-D8-A1XU-01	ZNF217	ENST00000371471.2,ENST00000302342.3	chr20	52185358:52185803:52188259:52188392:52192265:52192566,	52188260	52188392	52188259	52188259	Splice_Site	C	G	e4+1
BRCA	TCGA-E9-A1RG-01	ZNF330	ENST00000421169.2,ENST00000512809.1,ENST00000262990.4,ENST00000507532.1,ENST00000512738.1,ENST00000506302.1	chr4	142147920:142148000:142150724:142150851:142151319:142151360,	142150725	142150851	142150852	142150852	Splice_Site	G	T	e5+1
BRCA	TCGA-D8-A1X8-01	ZNF483	ENST00000358151.4,ENST00000309235.5,ENST00000355824.3	chr9	114289547:114290087:114293154:114293243:114296018:114296145,	114293155	114293243	114293154	114293154	Splice_Site	G	C	e2-1
BRCA	TCGA-AO-A12E-01	ZNF620	ENST00000314529.6,ENST00000420891.1	chr3	40552960:40553087:40553892:40554006:40557350:40557435,	40553893	40554006	40554007	40554007	Splice_Site	G	T	e3+1
BRCA	TCGA-A2-A0CT-01	TGM7	ENST00000452443.2	chr15	43569059:43569193:43571314:43571475:43571822:43572149,	43571315	43571475	43571476	43571476	Splice_Site	C	T	e11-1
BRCA	TCGA-AO-A0J9-01	DALRD3	ENST00000438585.1	chr3	49053009:49053140:49053251:49053305:49053405:49053493,	49053252	49053305	49053306	49053306	Splice_Site	C	T	e11-1
BRCA	TCGA-AO-A0J9-01	DALRD3	ENST00000313778.5,ENST00000484831.1,ENST00000341949.4,ENST00000441576.2,ENST00000395462.4,ENST00000460505.1	chr3	49053009:49053140:49053236:49053305:49053405:49053493,	49053237	49053305	49053306	49053306	Splice_Site	C	T	e11-1
BRCA	TCGA-BH-A0C0-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1	chr16	68846037:68846166:68847215:68847398:68849417:68849662,	68847216	68847398	68847399	68847399	Splice_Site	G	C	e9+1
BRCA	TCGA-BH-A0DH-01	SGSM1	ENST00000470591.1	chr22	25202407:25202451:25209644:25209722:25209975:25210159,	25209645	25209722	25209724	25209724	Splice_Site	T	C	NULL
BRCA	TCGA-AO-A03O-01	DDX43	ENST00000370336.4	chr6	74125219:74125307:74125835:74125974:74126909:74127292,	74125836	74125974	74125835	74125835	Splice_Site	G	C	e16-1
BRCA	TCGA-BH-A0AY-01	CD74	ENST00000353334.6,ENST00000518797.1,ENST00000522246.1,ENST00000517752.1,ENST00000009530.7	chr5	149784242:149784330:149784647:149784743:149785821:149785884,	149784648	149784743	149784647	149784647	Splice_Site	C	-	e5+1
BRCA	TCGA-A8-A06X-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000340834.4,ENST00000446842.2,ENST00000421834.2,ENST00000370769.4	chr6	56394245:56394572:56394771:56394931:56397141:56397308,	56394772	56394931	56394933	56394933	Splice_Site	T	C	e59-2
BRCA	TCGA-A2-A0ST-01	GALNT3	ENST00000437849.1	chr2	166615845:166616080:166618262:166618302:166618414:166618535,	166618263	166618302	166618262	166618262	Splice_Site	C	T	e3+1
BRCA	TCGA-AR-A1AK-01	KLK12	ENST00000319590.4,ENST00000525263.1,ENST00000250351.4	chr19	51534114:51534177:51535131:51535391:51537235:51537395,	51535132	51535391	51535130	51535130	Splice_Site	A	G	e3+2
CHOL	TCGA-ZH-A8Y5-01	PGGT1B	ENST00000419445.1	chr5	114552561:114552670:114566672:114566718:114572086:114572219,114557520:114557705:114566672:114566718:114572086:114572219,	114566673	114566718	114566719	114566719	Splice_Site	C	T	.
CHOL	TCGA-W5-AA2Q-01	SYTL3	ENST00000297239.9,ENST00000360448.3	chr6	159086426:159086645:159103956:159104021:159128261:159128313,	159103957	159104021	159104022	159104022	Splice_Site	G	T	.
CHOL	TCGA-W5-AA2Q-01	BTBD16	ENST00000260723.4	chr10	124034554:124034614:124036305:124036454:124043365:124043439,	124036306	124036454	124036305	124036305	Splice_Site	G	A	.
CHOL	TCGA-ZH-A8Y6-01	TMPRSS3	ENST00000474596.1,ENST00000433957.2,ENST00000398405.1,ENST00000398397.3,ENST00000380399.1,ENST00000482761.1,ENST00000291532.3	chr21	43802173:43802343:43803141:43803307:43804078:43804122,	43803142	43803307	43803308	43803308	Splice_Site	C	A	.
CHOL	TCGA-W5-AA2X-01	GTF2IRD1	ENST00000489094.1,ENST00000424337.2,ENST00000265755.3,ENST00000476977.1	chr7	73922404:73922533:73927159:73927301:73929770:73929926,	73927160	73927301	73927158	73927158	Splice_Site	A	G	.
CHOL	TCGA-W5-AA2R-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047805	96047805	Splice_Site	G	T	.
CHOL	TCGA-3X-AAV9-01	PRMT7	ENST00000564441.1	chr16	68349881:68349977:68355328:68355365:68358585:68358669,68345944:68346079:68355328:68355365:68358585:68358669,	68355329	68355365	68355328	68355328	Splice_Site	G	T	.
CHOL	TCGA-W5-AA2W-01	CATSPERB	ENST00000256343.3	chr14	92102768:92102923:92105439:92105594:92126180:92126325,	92105440	92105594	92105595	92105595	Splice_Site	C	T	.
CHOL	TCGA-3X-AAVA-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306336	179306336	Splice_Site	C	T	.
CHOL	TCGA-W5-AA38-01	PSG5	ENST00000599812.1,ENST00000342951.6	chr19	43672273:43672355:43674206:43674290:43679366:43679621,	43674207	43674290	43674291	43674291	Splice_Site	C	T	.
CHOL	TCGA-W5-AA38-01	CCDC138	ENST00000295124.4,ENST00000412964.2	chr2	109404487:109404545:109405307:109405422:109408130:109408258,	109405308	109405422	109405307	109405307	Splice_Site	G	T	.
CHOL	TCGA-W5-AA38-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64968457	64968457	Splice_Site	T	G	.
CHOL	TCGA-W5-AA38-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112155042	112155042	Splice_Site	G	T	.
CHOL	TCGA-W6-AA0S-01	NAV3	ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78516041:78516208:78520946:78520988:78522485:78522646,	78520947	78520988	78520946	78520946	Splice_Site	G	T	.
CHOL	TCGA-W6-AA0S-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000395187.2,ENST00000427635.2,ENST00000412272.2	chr10	69773782:69773943:69785302:69785433:69792534:69792626,	69785303	69785433	69785435	69785435	Splice_Site	T	A	.
CHOL	TCGA-W6-AA0S-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30060978:30061053:30064321:30064435:30067814:30067937,	30064322	30064435	30064437	30064437	Splice_Site	T	G	.
CHOL	TCGA-YR-A95A-01	MDM2	ENST00000348801.2,ENST00000428863.2	chr12	69207338:69207408:69229608:69229764:69233053:69233629,69203006:69203072:69229608:69229764:69233053:69233062,	69229609	69229764	69229765	69229765	Splice_Site	G	T	.
CHOL	TCGA-W5-AA34-01	GBF1	ENST00000369983.3	chr10	104123012:104123153:104123466:104123555:104125153:104125356,	104123467	104123555	104123466	104123466	Splice_Site	G	T	.
CHOL	TCGA-W5-AA36-01	ZCCHC14	ENST00000268616.4,ENST00000568020.1,ENST00000561928.1	chr16	87446660:87446801:87448019:87448147:87448881:87448973,	87448020	87448147	87448149	87448149	Splice_Site	T	C	.
CHOL	TCGA-W5-AA36-01	IL33	ENST00000381434.3	chr9	6251139:6251265:6252865:6252991:6253551:6253602,	6252866	6252991	6252992	6252992	Splice_Site	G	A	.
CHOL	TCGA-W5-AA39-01	R3HDM2	ENST00000403821.2,ENST00000347140.3,ENST00000358907.2	chr12	57677606:57677839:57682639:57682693:57682791:57682823,	57682640	57682693	57682695	57682711	Splice_Site	TGTTGGTTAACATCAAA	-	.
CHOL	TCGA-W5-AA39-01	SLC17A3	ENST00000397060.4,ENST00000361703.6,ENST00000360657.3	chr6	25850275:25850405:25850686:25850848:25850986:25851105,	25850687	25850848	25850686	25850686	Splice_Site	C	T	.
CHOL	TCGA-W5-AA39-01	NID1	ENST00000264187.6	chr1	236156944:236157172:236175220:236175343:236176710:236176860,	236175221	236175343	236175345	236175345	Splice_Site	T	C	.
CHOL	TCGA-W5-AA39-01	BTBD8	ENST00000342818.3,ENST00000540648.1,ENST00000370382.3	chr1	92568029:92568226:92573440:92573558:92595243:92595333,	92573441	92573558	92573559	92573559	Splice_Site	G	T	.
CHOL	TCGA-W5-AA39-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58468578:58468648:58470491:58470652:58471483:58471583,	58470492	58470652	58470491	58470491	Splice_Site	C	T	.
CHOL	TCGA-W5-AA39-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5,ENST00000342215.6,ENST00000471075.1	chr3	171392289:171392403:171394504:171394623:171395355:171395484,	171394505	171394623	171394504	171394504	Splice_Site	C	T	.
CHOL	TCGA-4G-AAZT-01	TSG101	ENST00000438874.2,ENST00000536719.1,ENST00000251968.3,ENST00000535077.1	chr11	18531088:18531212:18536224:18536388:18537645:18537710,	18536225	18536388	18536390	18536390	Splice_Site	T	A	.
CHOL	TCGA-4G-AAZT-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439930	52439930	Splice_Site	T	C	.
CHOL	TCGA-3X-AAVC-01	DSC1	ENST00000257197.3	chr18	28709198:28710674:28710755:28710801:28711556:28711805,	28710756	28710801	28710755	28710755	Splice_Site	C	T	.
CESC	TCGA-EA-A43B-01	AAK1	ENST00000489327.1,ENST00000409085.4	chr2	69707991:69708093:69709842:69709944:69723116:69723212,	69709843	69709944	69709945	69709945	Splice_Site	C	G	e17-1
CESC	TCGA-DG-A2KL-01	AHCTF1	ENST00000366508.1,ENST00000326225.3,ENST00000391829.2	chr1	247059136:247059227:247061509:247061638:247062752:247062782,	247061510	247061638	247061639	247061639	Splice_Site	C	T	e12-1
CESC	TCGA-JW-A5VL-01	AMD1	ENST00000368876.1,ENST00000368877.5,ENST00000368885.3	chr6	111210059:111210186:111211456:111211559:111213363:111213406,	111211457	111211559	111211456	111211456	Splice_Site	G	C	e4-1
CESC	TCGA-C5-A7CL-01	ARHGAP4	ENST00000393721.1,ENST00000350060.5,ENST00000494302.1,ENST00000537206.1,ENST00000370028.3,ENST00000370016.1,ENST00000470209.1,ENST00000494397.1,ENST00000404127.2	chrX	153176153:153176288:153176375:153176453:153176582:153176641,	153176376	153176453	153176375	153176375	Splice_Site	C	G	e14+1
CESC	TCGA-BI-A0VS-01	ATG7	ENST00000434066.2	chr3	11356817:11356967:11372813:11372902:11374445:11374567,11356817:11356967:11372813:11372902:11382118:11382209,	11372814	11372902	11372813	11372813	Splice_Site	G	A	e7-1
CESC	TCGA-JX-A3Q8-01	ATP6V0A1	ENST00000264649.6,ENST00000393829.2,ENST00000588629.1,ENST00000589213.1,ENST00000343619.4,ENST00000537728.1,ENST00000587824.1,ENST00000546249.1,ENST00000585525.1	chr17	40612990:40613029:40618446:40618525:40622107:40622236,40612865:40613029:40618446:40618525:40620027:40620111,	40618447	40618525	40618526	40618526	Splice_Site	G	C	e2+1
CESC	TCGA-JX-A3Q8-01	B3GNTL1	ENST00000571954.1,ENST00000320865.3	chr17	80962990:80963086:80972329:80972395:80992910:80992975,	80972330	80972395	80972328	80972328	Splice_Site	A	T	e5+2
CESC	TCGA-EA-A4BA-01	C10orf90	ENST00000544758.1,ENST00000488181.1	chr10	128202416:128202508:128335133:128335206:128358809:128359015,	128335134	128335206	128335207	128335207	Splice_Site	C	G	e2-1
CESC	TCGA-JX-A3Q8-01	CAPN8	ENST00000366872.5,ENST00000419193.2,ENST00000366873.2	chr1	223816363:223816482:223842031:223842101:223853111:223853348,	223842032	223842101	223842102	223842102	Splice_Site	C	G	e2-1
CESC	TCGA-EA-A5FO-01	CASK	ENST00000378166.4,ENST00000378163.1,ENST00000378158.1,ENST00000378168.2,ENST00000361962.4,ENST00000318588.9	chrX	41416284:41416353:41419031:41419100:41420811:41420880,	41419032	41419100	41419101	41419101	Splice_Site	C	T	e18-1
CESC	TCGA-DS-A0VN-01	CCDC78	ENST00000463539.1,ENST00000466708.1,ENST00000293889.6,ENST00000482152.1,ENST00000485091.1,ENST00000345165.4	chr16	773094:773161:773856:773936:774105:774205,	773857	773936	773855	773855	Splice_Site	A	G	e11+2
CESC	TCGA-IR-A3LI-01	CEP112	ENST00000535342.2,ENST00000582795.1,ENST00000580482.1,ENST00000580694.1,ENST00000392769.2,ENST00000317442.8,ENST00000581739.1,ENST00000537949.1	chr17	63685300:63685336:63739185:63739335:63746779:63746842,	63739186	63739335	63739336	63739336	Splice_Site	C	T	e22-1
CESC	TCGA-C5-A1BE-01	CLIC5	ENST00000339561.6,ENST00000544153.1,ENST00000185206.6	chr6	45881964:45882146:45909283:45909390:45916992:45917118,	45909284	45909390	45909283	45909283	Splice_Site	C	T	e4+1
CESC	TCGA-Q1-A6DT-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3	chr9	43861005:43861206:43875988:43876145:43884944:43885072,	43875989	43876145	43875988	43875988	Splice_Site	G	C	e14-1
CESC	TCGA-Q1-A6DV-01	CREBBP	ENST00000573517.1,ENST00000262367.5,ENST00000382070.3	chr16	3795277:3795355:3799627:3799684:3801726:3801807,	3799628	3799684	3799625	3799626	Splice_Site	-	A	e21+2
CESC	TCGA-FU-A3TX-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3799627:3799684:3801726:3801807:3807288:3807377,	3801727	3801807	3801726	3801726	Splice_Site	C	T	e20+1
CESC	TCGA-IR-A3LL-01	CSRNP2	ENST00000548981.1	chr12	51467605:51467865:51470193:51470430:51477011:51477365,	51470194	51470430	51470431	51470431	Splice_Site	C	T	e1-1
CESC	TCGA-DS-A3LQ-01	CTIF	ENST00000382998.4	chr18	46065580:46065683:46066128:46066202:46145908:46146116,	46066129	46066202	46066203	46066203	Splice_Site	G	T	e0+1
CESC	TCGA-LP-A7HU-01	CXXC1	ENST00000590901.1,ENST00000412036.2,ENST00000285106.6,ENST00000589940.1	chr18	47809884:47809934:47810074:47810185:47810263:47810393,	47810075	47810185	47810186	47810186	Splice_Site	C	G	e11-1
CESC	TCGA-DS-A3LQ-01	DLG1	ENST00000448528.2,ENST00000419354.1,ENST00000392381.3,ENST00000346964.2	chr3	196869588:196869639:196876613:196876667:196921295:196921460,196869588:196869639:196876613:196876667:196910445:196910505,196869588:196869639:196876613:196876667:196888510:196888609,	196876614	196876667	196876613	196876613	Splice_Site	C	T	e6+1
CESC	TCGA-EK-A2RB-01	EIF2AK1	ENST00000446699.1,ENST00000463213.1,ENST00000461493.1	chr7	6089542:6089676:6094176:6094335:6098596:6098687,	6094177	6094335	6094176	6094176	Splice_Site	C	T	e2+1
CESC	TCGA-EK-A2RO-01	EIF4A1	ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000582746.1,ENST00000577731.1,ENST00000581384.1,ENST00000580888.1,ENST00000577269.1,ENST00000585024.1,ENST00000583802.1	chr17	7477865:7477996:7479841:7480010:7480373:7480428,7478505:7478576:7479841:7480010:7480373:7480428,	7479842	7480010	7479841	7479841	Splice_Site	G	T	e5-1
CESC	TCGA-IR-A3LC-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21137230:21137377:21139650:21139732:21143884:21144031,	21139651	21139732	21139650	21139650	Splice_Site	C	G	e29+1
CESC	TCGA-C5-A1BK-01	ELOVL5	ENST00000304434.6,ENST00000542638.1	chr6	53140976:53141054:53156573:53156761:53160439:53160505,	53156574	53156761	53156762	53156762	Splice_Site	C	G	e2-1
CESC	TCGA-FU-A40J-01	EPB41L1	ENST00000406771.2,ENST00000452261.1,ENST00000373941.1,ENST00000338074.2	chr20	34761690:34761876:34763472:34763637:34765873:34765978,	34763473	34763637	34763472	34763472	Splice_Site	G	C	e2-1
CESC	TCGA-EK-A2R8-01	EZH1	ENST00000592743.1,ENST00000586089.1	chr17	40879679:40879781:40880842:40880970:40882845:40882936,40879679:40879781:40880842:40880970:40897028:40897033,	40880843	40880970	40880971	40880971	Splice_Site	C	G	e1-1
CESC	TCGA-DS-A7WH-01	FAM50A	ENST00000464419.1,ENST00000158526.9,ENST00000393600.3	chrX	153677240:153677302:153677568:153677645:153678028:153678083,	153677569	153677645	153677568	153677568	Splice_Site	G	A	e8-1
CESC	TCGA-LP-A4AV-01	FAM81B	ENST00000503361.1	chr5	94749789:94749894:94764306:94764436:94772503:94772508,	94764307	94764436	94764306	94764306	Splice_Site	G	C	e6-1
CESC	TCGA-UC-A7PF-01	FHL1	ENST00000434885.1,ENST00000394155.2,ENST00000370690.3,ENST00000539015.1,ENST00000370676.3,ENST00000370674.1,ENST00000452016.1,ENST00000543669.1,ENST00000345434.3,ENST00000535737.1,ENST00000370683.1,ENST00000458357.1,ENST00000394153.2,ENST00000420362.1,ENST00000456445.1,ENST00000449474.1	chrX	135288565:135288747:135289174:135289349:135289950:135290042,	135289175	135289349	135289174	135289174	Splice_Site	G	A	e2-1
CESC	TCGA-LP-A4AW-01	GAS6	ENST00000357389.3,ENST00000327773.6	chr13	114549499:114549562:114550998:114551023:114566547:114566649,	114550999	114551023	114550997	114550997	Splice_Site	A	T	e3+2
CESC	TCGA-FU-A23L-01	GLDC	ENST00000321612.6	chr9	6532898:6533160:6534707:6534788:6536063:6536236,	6534708	6534788	6534789	6534789	Splice_Site	C	G	e24-1
CESC	TCGA-C5-A1MP-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000562090.1,ENST00000447066.2	chr16	74526854:74527038:74528657:74528729:74530338:74530542,	74528658	74528729	74528657	74528657	Splice_Site	C	A	e6+1
CESC	TCGA-EX-A69L-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911898	29911898	Splice_Site	G	A	e4-1
CESC	TCGA-FU-A3TQ-01	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31323001	31323001	Splice_Site	C	G	e5-1
CESC	TCGA-IR-A3LK-01	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31323001	31323001	Splice_Site	C	T	e5-1
CESC	TCGA-IR-A3LL-01	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31323001	31323001	Splice_Site	C	T	e5-1
CESC	TCGA-FU-A23L-01	IMMP1L	ENST00000527184.1	chr11	31474264:31474639:31477806:31477933:31531065:31531110,31455006:31455117:31477806:31477933:31482172:31482261,31470576:31470638:31477806:31477933:31482172:31482261,	31477807	31477933	31477934	31477934	Splice_Site	C	G	e3-1
CESC	TCGA-C5-A7CK-01	ITGA5	ENST00000293379.4	chr12	54793428:54793542:54793647:54793731:54794629:54794779,	54793648	54793731	54793645	54793646	Splice_Site	-	A	e26+2
CESC	TCGA-EA-A411-01	KATNBL1	ENST00000561371.1,ENST00000559760.1,ENST00000256544.3	chr15	34437598:34437692:34438961:34439051:34439400:34439415,	34438962	34439051	34438961	34438961	Splice_Site	C	A	e7+1
CESC	TCGA-FU-A3NI-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44896899:44896934:44910953:44911047:44913073:44913200,	44910954	44911047	44911048	44911048	Splice_Site	G	A	e9+1
CESC	TCGA-EK-A2RD-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938390	44938390	Splice_Site	G	A	e20-1
CESC	TCGA-IR-A3LL-01	KIR3DX1	ENST00000471931.1,ENST00000465702.1,ENST00000434659.1,ENST00000447145.1,ENST00000221567.6	chr19	55049183:55049234:55053731:55053854:55054584:55054637,	55053732	55053854	55053855	55053855	Splice_Site	G	A	e7+1
CESC	TCGA-IR-A3LI-01	LAMTOR4	ENST00000474831.1	chr7	99746560:99746598:99747121:99747188:99751022:99751139,	99747122	99747188	99747121	99747121	Splice_Site	G	A	e2-1
CESC	TCGA-IR-A3LI-01	LAMTOR4	ENST00000460732.1,ENST00000441173.1	chr7	99746560:99746598:99747121:99747202:99751022:99751139,	99747122	99747202	99747121	99747121	Splice_Site	G	A	e2-1
CESC	TCGA-C5-A1MH-01	LMBR1L	ENST00000547382.1,ENST00000550867.1,ENST00000552577.1,ENST00000457164.2,ENST00000417750.1,ENST00000552879.1,ENST00000267102.8,ENST00000547670.1,ENST00000395141.4,ENST00000552141.1	chr12	49496258:49496323:49496669:49496734:49496873:49496903,	49496670	49496734	49496668	49496668	Splice_Site	A	G	e8+2
CESC	TCGA-C5-A3HD-01	LONRF3	ENST00000439603.1,ENST00000304778.7,ENST00000472173.1,ENST00000371628.3,ENST00000422289.2,ENST00000481285.1	chrX	118123370:118123635:118124432:118124523:118140083:118140198,	118124433	118124523	118124432	118124432	Splice_Site	G	A	e5-1
CESC	TCGA-DS-A7WH-01	LSM14A	ENST00000540746.2,ENST00000590416.1,ENST00000433627.5	chr19	34712411:34712643:34717312:34717369:34718269:34718318,	34717313	34717369	34717371	34717372	Splice_Site	-	A	e10+2
CESC	TCGA-FU-A3WB-01	LTBP4	ENST00000204005.9,ENST00000545697.1,ENST00000602240.1	chr19	41105102:41105161:41105307:41105462:41105973:41106083,	41105308	41105462	41105464	41105464	Splice_Site	T	C	e3+2
CESC	TCGA-FU-A3WB-01	LTBP4	ENST00000600509.1,ENST00000599016.1,ENST00000600026.1,ENST00000308370.7,ENST00000594537.1	chr19	41105102:41105161:41105326:41105462:41105973:41106083,	41105327	41105462	41105464	41105464	Splice_Site	T	C	e3+2
CESC	TCGA-LP-A5U2-01	LYPD3	ENST00000244333.3	chr19	43967281:43967439:43967750:43967921:43968476:43968608,	43967751	43967921	43967923	43967923	Splice_Site	T	C	e3-2
CESC	TCGA-EK-A3GJ-01	MAST3	ENST00000262811.6	chr19	18256552:18256675:18257690:18257827:18258252:18258434,	18257691	18257827	18257690	18257690	Splice_Site	G	C	e25-1
CESC	TCGA-Q1-A5R3-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37587367:37587441:37588194:37588269:37590501:37590573,	37588195	37588269	37588194	37588194	Splice_Site	C	T	e8+1
CESC	TCGA-C5-A3HE-01	MRC2	ENST00000303375.5,ENST00000584265.1	chr17	60749083:60749198:60749358:60749513:60751423:60751531,	60749359	60749513	60749358	60749358	Splice_Site	G	A	e8-1
CESC	TCGA-IR-A3LL-01	MX2	ENST00000330714.3,ENST00000482953.1,ENST00000496774.1	chr21	42770911:42770946:42771122:42771264:42773896:42774055,	42771123	42771264	42771122	42771122	Splice_Site	G	A	e9-1
CESC	TCGA-EK-A3GM-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171260756:171260910:171262054:171262143:171264224:171264354,	171262055	171262143	171262054	171262054	Splice_Site	G	A	e21-1
CESC	TCGA-FU-A2QG-01	NCR1	ENST00000338835.5,ENST00000447255.1,ENST00000594765.1	chr19	55417545:55417579:55417656:55417692:55417880:55418165,	55417657	55417692	55417656	55417656	Splice_Site	G	A	e2-1
CESC	TCGA-FU-A40J-01	NCR2	ENST00000373083.4,ENST00000373086.3	chr6	41309773:41309887:41310655:41310762:41318415:41318596,	41310656	41310762	41310655	41310655	Splice_Site	G	T	e5-1
CESC	TCGA-C5-A1BK-01	NOMO2	ENST00000569051.1,ENST00000381474.3,ENST00000564991.1,ENST00000330537.6,ENST00000543392.1	chr16	18542358:18542490:18542787:18542929:18544326:18544424,	18542788	18542929	18542930	18542930	Splice_Site	C	T	e13-1
CESC	TCGA-FU-A770-01	NPDC1	ENST00000371600.3,ENST00000371601.4	chr9	139935122:139935189:139935265:139935436:139935513:139935639,	139935266	139935436	139935437	139935437	Splice_Site	C	T	e3-1
CESC	TCGA-DG-A2KK-01	NPRL3	ENST00000445810.1	chr16	162658:162774:167299:167374:169124:169254,162658:162774:167299:167374:180520:180590,	167300	167374	167375	167375	Splice_Site	C	T	e4-1
CESC	TCGA-C5-A1BL-01	PITX2	ENST00000511837.1,ENST00000394598.2,ENST00000354925.2	chr4	111539741:111539844:111542319:111542525:111553498:111553636,	111542320	111542525	111542526	111542526	Splice_Site	C	T	e2-1
CESC	TCGA-C5-A1MJ-01	PIWIL4	ENST00000299001.6	chr11	94334960:94335145:94337149:94337222:94340604:94340805,	94337150	94337222	94337148	94337148	Splice_Site	A	G	e13-2
CESC	TCGA-C5-A1MH-01	PLEKHA1	ENST00000368990.3,ENST00000433307.1,ENST00000368989.2,ENST00000392799.3,ENST00000368988.1,ENST00000538022.1	chr10	124183714:124183779:124184411:124184475:124186457:124186547,	124184412	124184475	124184411	124184411	Splice_Site	G	A	e9-1
CESC	TCGA-IR-A3LL-01	PLEKHA8	ENST00000396259.1,ENST00000396257.2,ENST00000449726.1,ENST00000258679.7,ENST00000440706.2	chr7	30090049:30090090:30092324:30092482:30094324:30094481,	30092325	30092482	30092483	30092483	Splice_Site	G	C	e7+1
CESC	TCGA-JW-A5VI-01	PLEKHG4	ENST00000569875.1	chr16	67321852:67321917:67322069:67322303:67322391:67322507,67321852:67321917:67322069:67322303:67322705:67322845,	67322070	67322303	67322304	67322304	Splice_Site	G	T	e19+1
CESC	TCGA-C5-A7UE-01	POLE	ENST00000320574.5,ENST00000537064.1	chr12	133256539:133256632:133256763:133256808:133257192:133257273,	133256764	133256808	133256810	133256810	Splice_Site	T	A	e4-2
CESC	TCGA-EA-A3HT-01	PRIMA1	ENST00000316227.3,ENST00000393140.1,ENST00000393143.1,ENST00000477603.1	chr14	94203586:94203716:94245521:94245657:94253971:94254095,	94245522	94245657	94245521	94245521	Splice_Site	C	T	e2+1
CESC	TCGA-Q1-A73P-01	PTBP1	ENST00000350092.4	chr19	806518:806556:807868:807902:808359:808452,799412:799443:807868:807902:808359:808404,	807869	807902	807868	807868	Splice_Site	G	C	e11-1
CESC	TCGA-JW-A5VH-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690847	89690847	Splice_Site	G	T	e4+1
CESC	TCGA-FU-A23K-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717609	89717609	Splice_Site	G	A	e7-1
CESC	TCGA-FU-A23K-01	PTPRM	ENST00000580170.1	chr18	8248147:8248174:8252485:8252497:8253224:8253412,	8252486	8252497	8252485	8252485	Splice_Site	G	T	e18-1
CESC	TCGA-Q1-A73R-01	RAB5A	ENST00000446547.1,ENST00000469122.1,ENST00000273047.4,ENST00000473608.1,ENST00000422242.1	chr3	20017134:20017244:20017538:20017661:20019801:20019895,	20017539	20017661	20017662	20017662	Splice_Site	G	A	e3+1
CESC	TCGA-C5-A2LX-01	RAD21	ENST00000523547.1,ENST00000519837.1,ENST00000522699.1,ENST00000297338.2,ENST00000517485.1,ENST00000520992.1	chr8	117874092:117874179:117875368:117875498:117878824:117879000,	117875369	117875498	117875499	117875499	Splice_Site	C	T	e2-1
CESC	TCGA-FU-A57G-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145598547:145598666:145602965:145603090:145608508:145608600,	145602966	145603090	145603092	145603092	Splice_Site	T	A	e3+2
CESC	TCGA-EK-A2RJ-01	RBP5	ENST00000266560.3,ENST00000542784.1	chr12	7276662:7276770:7277224:7277326:7280835:7281014,	7277225	7277326	7277327	7277327	Splice_Site	C	G	e3-1
CESC	TCGA-EX-A69L-01	RSF1	ENST00000308488.6,ENST00000528095.1,ENST00000360355.2	chr11	77413445:77413540:77436589:77436744:77451775:77451981,	77436590	77436744	77436745	77436745	Splice_Site	C	G	e5-1
CESC	TCGA-IR-A3LL-01	SERPINB3	ENST00000283752.5	chr18	61322431:61323295:61324064:61324220:61324503:61324645,	61324065	61324220	61324221	61324221	Splice_Site	C	G	e6-1
CESC	TCGA-MY-A5BE-01	SIPA1L2	ENST00000262861.4,ENST00000308942.4,ENST00000366630.1	chr1	232579347:232579431:232581274:232581532:232596632:232596907,	232581275	232581532	232581533	232581533	Splice_Site	C	G	e9-1
CESC	TCGA-C5-A1BQ-01	SNUPN	ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75893478:75893559:75897490:75897568:75899556:75899654,	75897491	75897568	75897569	75897569	Splice_Site	C	G	e7-1
CESC	TCGA-UC-A7PF-01	SPP1	ENST00000509659.1,ENST00000395080.3,ENST00000513981.1	chr4	88898210:88898249:88901544:88901586:88902626:88902740,88901197:88901278:88901544:88901586:88902626:88902740,	88901545	88901586	88901544	88901544	Splice_Site	G	C	e4-1
CESC	TCGA-C5-A1MH-01	STAT4	ENST00000392320.2,ENST00000495849.1,ENST00000358470.4	chr2	191929532:191929684:191931155:191931241:191934418:191934497,	191931156	191931241	191931242	191931242	Splice_Site	C	T	e6-1
CESC	TCGA-EK-A2R7-01	SUPT16H	ENST00000216297.2,ENST00000557394.1	chr14	21819637:21820977:21821646:21821724:21821861:21821991,	21821647	21821724	21821725	21821725	Splice_Site	C	G	e25-1
CESC	TCGA-EK-A3GK-01	TGM4	ENST00000422219.1,ENST00000495844.1,ENST00000296125.4	chr3	44932101:44932224:44935068:44935187:44938200:44938231,	44935069	44935187	44935068	44935068	Splice_Site	G	C	e5-1
CESC	TCGA-EA-A50E-01	TMEM98	ENST00000394642.3,ENST00000395149.2,ENST00000261713.4,ENST00000579849.1,ENST00000583437.2,ENST00000439138.1,ENST00000583120.1,ENST00000578289.1,ENST00000582227.1	chr17	31258610:31258677:31260191:31260323:31261308:31261326,	31260192	31260323	31260324	31260324	Splice_Site	G	A	e2+1
CESC	TCGA-C5-A3HD-01	TRAPPC1	ENST00000571739.1	chr17	7834823:7834894:7835048:7835147:7835257:7835280,7834412:7834467:7835048:7835147:7835257:7835280,	7835049	7835147	7835148	7835148	Splice_Site	C	G	e1-1
CESC	TCGA-Q1-A6DT-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57128574:57128689:57134235:57134415:57138392:57138469,	57134236	57134415	57134235	57134235	Splice_Site	C	T	e13+1
CESC	TCGA-EA-A3HT-01	UBE2E1	ENST00000495141.1,ENST00000442670.1,ENST00000306627.3	chr3	23848820:23848912:23852950:23853001:23929057:23929190,	23852951	23853001	23852950	23852950	Splice_Site	G	A	e2-1
CESC	TCGA-EA-A6QX-01	UBTF	ENST00000302904.4,ENST00000527034.1,ENST00000537550.1,ENST00000529383.1,ENST00000533177.1,ENST00000526094.1,ENST00000436088.1,ENST00000393606.3,ENST00000343638.5	chr17	42293021:42293177:42293273:42293357:42293896:42294072,	42293274	42293357	42293273	42293273	Splice_Site	C	T	e3+1
CESC	TCGA-DG-A2KL-01	USP19	ENST00000398892.3,ENST00000398896.1,ENST00000398898.2,ENST00000464931.1,ENST00000417901.1,ENST00000306026.5,ENST00000453664.1,ENST00000434032.2,ENST00000398888.2	chr3	49153723:49153784:49153883:49154040:49154159:49154376,	49153884	49154040	49154041	49154041	Splice_Site	C	G	e6-1
CESC	TCGA-C5-A1BM-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219320302:219320441:219321814:219321884:219324512:219324628,	219321815	219321884	219321885	219321885	Splice_Site	C	T	e21-1
CESC	TCGA-IR-A3LH-01	YIPF3	ENST00000511831.1,ENST00000506469.1,ENST00000416380.2,ENST00000503972.1,ENST00000490447.2,ENST00000455768.2,ENST00000502714.1,ENST00000372422.2	chr6	43481333:43481371:43483332:43483439:43483626:43483784,	43483333	43483439	43483440	43483440	Splice_Site	C	T	e3-1
CESC	TCGA-IR-A3LH-01	YIPF3	ENST00000510102.1	chr6	43481333:43481371:43483343:43483439:43483626:43483784,	43483344	43483439	43483440	43483440	Splice_Site	C	T	e3-1
CESC	TCGA-C5-A1MN-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266402	75266402	Splice_Site	T	C	e5+2
CESC	TCGA-IR-A3LH-01	TLE6	ENST00000468176.3,ENST00000452088.1,ENST00000478073.2,ENST00000246112.4	chr19	2986980:2987236:2987353:2987370:2987721:2987788,	2987354	2987370	2987353	2987353	Splice_Site	G	A	e7-1
CESC	TCGA-Q1-A73O-01	BCL11A	ENST00000359629.5,ENST00000335712.6,ENST00000356842.4,ENST00000489516.2	chr2	60689416:60689559:60695866:60695968:60754789:60754929,60689416:60689559:60695866:60695968:60773105:60773315,	60695867	60695968	60695969	60695969	Splice_Site	C	G	e3-1
CESC	TCGA-DR-A0ZM-01	BRAP	ENST00000419234.4,ENST00000327551.6	chr12	112116954:112117144:112119440:112119639:112120949:112121111,	112119441	112119639	112119640	112119640	Splice_Site	C	G	e3-1
CESC	TCGA-JX-A3Q0-01	BRWD3	ENST00000473691.1,ENST00000373275.4	chrX	79962925:79963002:79964926:79965076:79971655:79971749,	79964927	79965076	79965077	79965077	Splice_Site	C	T	e21-1
CESC	TCGA-Q1-A73O-01	BSPRY	ENST00000462085.1	chr9	116111821:116112060:116116519:116116618:116122786:116123017,	116116520	116116618	116116519	116116519	Splice_Site	G	A	e2-1
CESC	TCGA-C5-A1BQ-01	C4orf36	ENST00000504008.1,ENST00000295898.3,ENST00000506308.1,ENST00000473559.1	chr4	87809023:87809046:87809273:87809428:87811200:87811291,87809023:87809046:87809273:87809428:87812608:87812746,	87809274	87809428	87809429	87809429	Splice_Site	C	G	e2-1
CESC	TCGA-IR-A3LK-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48680986:48681110:48681648:48681728:48682148:48682261,	48681649	48681728	48681729	48681729	Splice_Site	C	G	e28-1
CESC	TCGA-JX-A3Q0-01	CGN	ENST00000271636.7,ENST00000473377.1	chr1	151508075:151508159:151508255:151508374:151508712:151508821,	151508256	151508374	151508255	151508255	Splice_Site	G	A	e17-1
CESC	TCGA-EK-A2R9-01	CNGA1	ENST00000544810.1	chr4	47954599:47954720:47972912:47973117:47983409:47983550,	47972913	47973117	47973119	47973120	Splice_Site	-	A	e1-2
CESC	TCGA-Q1-A73O-01	CSTF3	ENST00000323959.4	chr11	33112077:33112273:33113816:33113886:33117851:33117954,	33113817	33113886	33113887	33113887	Splice_Site	C	T	e16-1
CESC	TCGA-Q1-A73O-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000465461.2,ENST00000360264.3,ENST00000556210.1,ENST00000485792.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101747716:101747739:101754977:101755054:101758486:101758553,	101754978	101755054	101754977	101754977	Splice_Site	G	A	e7-1
CESC	TCGA-EK-A3GK-01	CWF19L2	ENST00000532251.1,ENST00000282251.5	chr11	107205606:107205687:107207283:107207439:107219662:107219779,	107207284	107207439	107207441	107207442	Splice_Site	-	A	e15-2
CESC	TCGA-EA-A3HU-01	DNAJC27	ENST00000468467.1,ENST00000380809.3	chr2	25180734:25180843:25181415:25181470:25186273:25186343,	25181416	25181470	25181414	25181414	Splice_Site	A	G	e4+2
CESC	TCGA-EK-A2PG-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561388	142561388	Splice_Site	G	C	e2-1
CESC	TCGA-IR-A3LK-01	FANCD2	ENST00000287647.3,ENST00000431693.1,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10070308:10070405:10074515:10074656:10076152:10076197,	10074516	10074656	10074515	10074515	Splice_Site	G	C	e2-1
CESC	TCGA-IR-A3LK-01	GTPBP1	ENST00000216044.5	chr22	39112656:39113005:39117746:39117870:39120301:39120416,	39117747	39117870	39117746	39117746	Splice_Site	G	C	e5-1
CESC	TCGA-JW-A5VL-01	HDAC4	ENST00000541256.1,ENST00000535493.1,ENST00000493582.1	chr2	240036748:240037006:240048151:240048390:240055940:240056139,	240048152	240048390	240048391	240048391	Splice_Site	C	T	e10-1
CESC	TCGA-JW-A5VL-01	HECTD3	ENST00000372172.4	chr1	45473911:45473993:45474207:45474373:45474815:45474898,	45474208	45474373	45474374	45474374	Splice_Site	C	T	e8-1
CESC	TCGA-DR-A0ZM-01	HMG20B	ENST00000488973.2,ENST00000262949.7,ENST00000333651.6,ENST00000435022.1,ENST00000416526.1	chr19	3575539:3575658:3576258:3576305:3576550:3576600,	3576259	3576305	3576258	3576258	Splice_Site	G	C	e5-1
CESC	TCGA-IR-A3LA-01	ITGA8	ENST00000378076.3	chr10	15614209:15614368:15617487:15617593:15628582:15628663,	15617488	15617593	15617594	15617594	Splice_Site	C	T	e24-1
CESC	TCGA-JW-A5VL-01	KRT13	ENST00000587544.1,ENST00000590425.1,ENST00000468313.1,ENST00000336861.3,ENST00000464634.2	chr17	39659538:39659695:39659894:39659977:39661307:39661487,	39659895	39659977	39659978	39659978	Splice_Site	C	T	e2-1
CESC	TCGA-Q1-A73O-01	MED29	ENST00000596297.1	chr19	39883103:39883162:39884192:39884300:39888096:39888338,	39884193	39884300	39884192	39884192	Splice_Site	G	C	e3-1
CESC	TCGA-Q1-A73O-01	MED29	ENST00000599213.2,ENST00000315588.5	chr19	39883103:39883162:39884192:39884277:39888096:39888338,	39884193	39884277	39884192	39884192	Splice_Site	G	C	e3-1
CESC	TCGA-EA-A3HU-01	MLH1	ENST00000447829.1	chr3	37053572:37053590:37055922:37056035:37058996:37059090,37053572:37053590:37055922:37056035:37061800:37061954,	37055923	37056035	37055922	37055922	Splice_Site	G	A	e9-1
CESC	TCGA-C5-A1BQ-01	MTDH	ENST00000519934.1	chr8	98711981:98712080:98718853:98718978:98725889:98725997,98703358:98703416:98718853:98718978:98725889:98725997,	98718854	98718978	98718853	98718853	Splice_Site	G	C	e8-1
CESC	TCGA-EA-A3HU-01	NFKB1	ENST00000505458.1,ENST00000394820.4,ENST00000600343.1,ENST00000226574.4	chr4	103533590:103533763:103534581:103534738:103537590:103538072,	103534582	103534738	103534740	103534741	Splice_Site	-	A	e22+2
CESC	TCGA-Q1-A73O-01	NSMCE4A	ENST00000369023.3,ENST00000468209.1,ENST00000489266.1	chr10	123718879:123718925:123719015:123719110:123719872:123719921,	123719016	123719110	123719111	123719111	Splice_Site	C	G	e9-1
CESC	TCGA-Q1-A73O-01	PPEF2	ENST00000511880.3,ENST00000286719.7	chr4	76788465:76788572:76793177:76793320:76794279:76794465,	76793178	76793320	76793176	76793176	Splice_Site	G	A	e12+2
CESC	TCGA-C5-A1BQ-01	PRPF40A	ENST00000493468.2	chr2	153532918:153533293:153533964:153533989:153535865:153535986,	153533965	153533989	153533990	153533990	Splice_Site	C	T	e9-1
CESC	TCGA-DR-A0ZM-01	PTPRZ1	ENST00000449182.1	chr7	121651261:121651363:121659177:121659322:121668605:121668697,	121659178	121659322	121659177	121659177	Splice_Site	G	C	e13-1
CESC	TCGA-IR-A3LH-01	RAB1B	ENST00000527397.1	chr11	66036060:66036164:66039267:66039340:66039627:66039723,	66039268	66039340	66039341	66039341	Splice_Site	G	A	e2+1
CESC	TCGA-Q1-A73O-01	RALYL	ENST00000522455.1,ENST00000521695.1,ENST00000517638.1,ENST00000523850.1,ENST00000521268.1	chr8	85686813:85686889:85717004:85717037:85762214:85762262,	85717005	85717037	85717004	85717004	Splice_Site	G	C	e3-1
CESC	TCGA-IR-A3LA-01	RNF180	ENST00000389100.4,ENST00000381081.2	chr5	63461708:63461780:63496634:63496769:63507891:63507987,	63496635	63496769	63496634	63496634	Splice_Site	G	C	e1-1
CESC	TCGA-Q1-A73O-01	SCAP	ENST00000320017.6,ENST00000545718.1	chr3	47463931:47464026:47465422:47465535:47466974:47467101,47463931:47464026:47465422:47465535:47476497:47476627,	47465423	47465535	47465422	47465422	Splice_Site	C	G	e8+1
CESC	TCGA-C5-A1BQ-01	SEPT11	ENST00000502584.1,ENST00000505788.1	chr4	77871014:77871083:77917577:77917692:77926753:77926949,	77917578	77917692	77917577	77917577	Splice_Site	G	C	e2-1
CESC	TCGA-Q1-A73O-01	SERP1	ENST00000479209.1	chr3	150262099:150262285:150263489:150263565:150263838:150264286,	150263490	150263565	150263566	150263566	Splice_Site	C	T	e2-1
CESC	TCGA-Q1-A73O-01	SORBS1	ENST00000361941.3,ENST00000347291.4,ENST00000371247.2	chr10	97143994:97144042:97154367:97154430:97154757:97154832,	97154368	97154430	97154431	97154431	Splice_Site	C	T	e13-1
CESC	TCGA-IR-A3LH-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000420434.3	chr2	231113599:231113683:231115695:231115776:231120166:231120247,231113599:231113683:231115695:231115776:231118030:231118132,	231115696	231115776	231115695	231115695	Splice_Site	G	A	e10-1
CESC	TCGA-IR-A3LK-01	TLN1	ENST00000314888.9	chr9	35704328:35704495:35704665:35704812:35705547:35705667,	35704666	35704812	35704813	35704813	Splice_Site	C	G	e43-1
CESC	TCGA-DR-A0ZM-01	TMBIM1	ENST00000437694.2,ENST00000445635.1,ENST00000465082.1,ENST00000258412.3,ENST00000396809.2,ENST00000444881.1	chr2	219141726:219141822:219142088:219142176:219142355:219142393,	219142089	219142176	219142177	219142177	Splice_Site	C	G	e8-1
CESC	TCGA-IR-A3LA-01	TOP3B	ENST00000457179.1,ENST00000357179.5,ENST00000436282.1,ENST00000457270.1,ENST00000398793.2	chr22	22313503:22313604:22313958:22314108:22314692:22314821,	22313959	22314108	22314109	22314109	Splice_Site	C	G	e14-1
CESC	TCGA-Q1-A73O-01	TTC27	ENST00000317907.4	chr2	32853222:32853447:32855589:32855767:32858942:32859072,	32855590	32855767	32855589	32855589	Splice_Site	G	A	e2-1
CESC	TCGA-Q1-A73O-01	TTC3	ENST00000438055.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38524192:38524329:38525250:38525577:38528956:38529208,	38525251	38525577	38525250	38525250	Splice_Site	G	C	e26-1
CESC	TCGA-JW-A5VL-01	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461622:10461644:10461727:10461838:10463109:10463168,	10461728	10461838	10461839	10461839	Splice_Site	C	T	e22-1
CESC	TCGA-IR-A3LH-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219328028:219328089:219330732:219330899:219339352:219339608,	219330733	219330899	219330900	219330900	Splice_Site	C	A	e18-1
ESCA	TCGA-R6-A6L6-01	RNF180	ENST00000389100.4	chr5	63513187:63513223:63621012:63621238:63626107:63626233,	63621013	63621238	63621011	63621011	Splice_Site	A	G	.
ESCA	TCGA-VR-AA4D-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679564	21679564	Splice_Site	C	G	.
ESCA	TCGA-VR-AA4D-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679564	21679564	Splice_Site	C	G	.
ESCA	TCGA-VR-AA4D-01	MTSS1	ENST00000524243.1,ENST00000325064.5,ENST00000472084.2,ENST00000354184.4,ENST00000518547.1	chr8	125711766:125711840:125716370:125716432:125740124:125740239,	125716371	125716432	125716370	125716370	Splice_Site	C	T	.
ESCA	TCGA-VR-AA4D-01	RNF214	ENST00000530849.1,ENST00000531287.1,ENST00000531452.1,ENST00000300650.4	chr11	117152029:117152120:117152315:117152414:117152609:117152627,	117152316	117152414	117152314	117152314	Splice_Site	A	T	.
ESCA	TCGA-2H-A9GJ-01	FAXDC2	ENST00000517938.1,ENST00000522825.1,ENST00000520581.1,ENST00000326080.5	chr5	154202086:154202137:154202946:154203152:154210360:154210482,	154202947	154203152	154202946	154202946	Splice_Site	C	T	.
ESCA	TCGA-2H-A9GJ-01	FMN2	ENST00000319653.9,ENST00000545751.1	chr1	240497408:240497529:240519115:240519208:240555810:240555862,	240519116	240519208	240519210	240519210	Splice_Site	T	C	.
ESCA	TCGA-VR-A8EX-01	CDKL1	ENST00000216378.2	chr14	50811703:50811776:50825745:50825867:50862418:50862617,	50825746	50825867	50825868	50825868	Splice_Site	C	A	.
ESCA	TCGA-VR-A8EX-01	FBXL2	ENST00000464164.1,ENST00000507198.1,ENST00000484457.1,ENST00000538892.1,ENST00000421391.1	chr3	33339155:33339217:33400458:33400513:33400774:33400849,	33400459	33400513	33400458	33400458	Splice_Site	G	C	.
ESCA	TCGA-XP-A8T6-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116948791	116948791	Splice_Site	G	T	.
ESCA	TCGA-IC-A6RE-01	SUSD2	ENST00000358321.3,ENST00000463101.1	chr22	24581453:24581539:24581628:24581897:24581983:24582127,	24581629	24581897	24581898	24581898	Splice_Site	G	T	.
ESCA	TCGA-IC-A6RE-01	SEPT3	ENST00000396417.2,ENST00000328414.8	chr22	42373053:42373078:42377648:42377840:42381987:42382116,42373053:42373078:42377648:42377840:42383625:42383693,	42377649	42377840	42377841	42377841	Splice_Site	G	T	.
ESCA	TCGA-IC-A6RE-01	ADAMTS14	ENST00000373207.1,ENST00000373208.1	chr10	72513555:72513763:72517717:72517847:72517930:72518041,	72517718	72517847	72517717	72517717	Splice_Site	G	C	.
ESCA	TCGA-IC-A6RE-01	UGGT2	ENST00000491509.1,ENST00000376747.3	chr13	96519592:96519677:96529532:96529618:96529951:96530110,	96529533	96529618	96529620	96529620	Splice_Site	T	C	.
ESCA	TCGA-IG-A5B8-01	ADHFE1	ENST00000419955.1,ENST00000431959.1	chr8	67352396:67352434:67355032:67355079:67356601:67356655,67344747:67344810:67355032:67355079:67356601:67356655,	67355033	67355079	67355081	67355081	Splice_Site	T	C	.
ESCA	TCGA-LN-A4A3-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262661	25262661	Splice_Site	G	A	.
ESCA	TCGA-L5-A43J-01	DNAJC19	ENST00000478723.1,ENST00000479269.1,ENST00000486355.1,ENST00000382564.2	chr3	180703713:180703784:180705810:180705884:180705965:180706017,180704785:180704810:180705810:180705884:180707387:180707491,180704785:180704810:180705810:180705884:180705965:180706017,	180705811	180705884	180705810	180705810	Splice_Site	C	T	.
ESCA	TCGA-L5-A43J-01	PRKACA	ENST00000589994.1,ENST00000587372.1,ENST00000308677.4,ENST00000588209.1,ENST00000536649.1,ENST00000350356.3	chr19	14208172:14208295:14208390:14208486:14208575:14208702,	14208391	14208486	14208488	14208488	Splice_Site	T	C	.
ESCA	TCGA-L5-A43J-01	LZTR1	ENST00000479606.1,ENST00000215739.8,ENST00000389355.3	chr22	21346502:21346658:21347082:21347193:21347950:21348043,	21347083	21347193	21347194	21347194	Splice_Site	G	A	.
ESCA	TCGA-L5-A43J-01	RNF214	ENST00000530849.1,ENST00000531287.1,ENST00000531452.1,ENST00000300650.4	chr11	117152029:117152120:117152315:117152414:117152609:117152627,	117152316	117152414	117152314	117152314	Splice_Site	A	G	.
ESCA	TCGA-ZR-A9CJ-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205713	115205713	Splice_Site	G	T	.
ESCA	TCGA-IC-A6RF-01	FGFR1OP	ENST00000349556.4	chr6	167417751:167417889:167424300:167424381:167435896:167436119,	167424301	167424381	167424300	167424300	Splice_Site	G	T	.
ESCA	TCGA-IG-A3YB-01	DNAH10	ENST00000497783.2,ENST00000409039.3	chr12	124363810:124363904:124364180:124364348:124366171:124366360,	124364181	124364348	124364180	124364180	Splice_Site	G	T	.
ESCA	TCGA-JY-A93C-01	WDR1	ENST00000502962.1,ENST00000502702.1,ENST00000515743.1,ENST00000382451.2,ENST00000499869.2,ENST00000382452.2	chr4	10078927:10079072:10079376:10079550:10080514:10080625,	10079377	10079550	10079552	10079552	Splice_Site	T	C	.
ESCA	TCGA-JY-A6F8-01	COPS4	ENST00000503682.1	chr4	83984228:83984399:83987590:83987706:83996449:83996524,83984228:83984399:83987590:83987706:83989590:83989659,83986212:83986308:83987590:83987706:83989590:83989659,	83987591	83987706	83987590	83987590	Splice_Site	G	T	.
ESCA	TCGA-JY-A6F8-01	PCK1	ENST00000319441.4,ENST00000535860.1	chr20	56138083:56138271:56138620:56138783:56139224:56139449,	56138621	56138783	56138620	56138620	Splice_Site	G	T	.
ESCA	TCGA-JY-A6F8-01	RAPGEF4	ENST00000538974.1,ENST00000540783.1,ENST00000397081.3,ENST00000535187.1,ENST00000539331.1,ENST00000264111.6,ENST00000397087.3	chr2	173900852:173900940:173901355:173901420:173913327:173913382,	173901356	173901420	173901421	173901421	Splice_Site	G	T	.
ESCA	TCGA-JY-A6F8-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150120	27150120	Splice_Site	G	T	.
ESCA	TCGA-LN-A5U7-01	PPP2R1B	ENST00000311129.5,ENST00000341980.6,ENST00000531373.1,ENST00000527614.1	chr11	111631679:111631775:111635528:111635629:111636017:111636108,	111635529	111635629	111635631	111635631	Splice_Site	T	A	.
ESCA	TCGA-LN-A5U7-01	SLC26A3	ENST00000340010.5	chr7	107412498:107412553:107414364:107414598:107415221:107415317,	107414365	107414598	107414599	107414599	Splice_Site	C	A	.
ESCA	TCGA-JY-A93E-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155260043:155260469:155261546:155261728:155262967:155263134,	155261547	155261728	155261729	155261729	Splice_Site	C	T	.
ESCA	TCGA-JY-A93E-01	NELFCD	ENST00000492016.1,ENST00000460601.1,ENST00000344018.3,ENST00000482747.1,ENST00000602795.1	chr20	57561150:57561263:57561808:57561918:57562762:57562872,	57561809	57561918	57561808	57561808	Splice_Site	G	T	.
ESCA	TCGA-R6-A6DN-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865875	41865875	Splice_Site	A	T	.
ESCA	TCGA-RE-A7BO-01	KNG1	ENST00000447445.1,ENST00000265023.4,ENST00000287611.2	chr3	186456887:186456995:186457116:186457203:186459310:186459388,	186457117	186457203	186457204	186457204	Splice_Site	G	T	.
ESCA	TCGA-IG-A6QS-01	TROVE2	ENST00000400968.2,ENST00000367445.3,ENST00000367444.3,ENST00000367441.1,ENST00000416058.2,ENST00000367446.3,ENST00000367443.1	chr1	193028788:193028906:193044949:193045170:193045630:193045777,193038361:193038764:193044949:193045170:193045630:193045777,	193044950	193045170	193045171	193045171	Splice_Site	G	T	.
ESCA	TCGA-LN-A49M-01	C5orf58	ENST00000524171.1,ENST00000593851.1	chr5	169659949:169660011:169661118:169661202:169661980:169662074,	169661119	169661202	169661118	169661119	Splice_Site	-	T	.
ESCA	TCGA-2H-A9GO-01	TENM4	ENST00000278550.7	chr11	78363875:78369861:78372493:78372636:78379981:78381596,	78372494	78372636	78372637	78372637	Splice_Site	C	T	.
ESCA	TCGA-2H-A9GO-01	ANK2	ENST00000394537.3,ENST00000503271.1,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1	chr4	114251401:114251626:114253127:114253226:114254209:114254364,	114253128	114253226	114253127	114253127	Splice_Site	G	A	.
ESCA	TCGA-2H-A9GO-01	GOLGA2	ENST00000450617.1,ENST00000458730.1,ENST00000609374.1,ENST00000421699.2	chr9	131030212:131030276:131030395:131030439:131030698:131030803,	131030396	131030439	131030440	131030440	Splice_Site	C	G	.
ESCA	TCGA-L5-A88Z-01	MYO7B	ENST00000428314.1,ENST00000389524.4,ENST00000409816.2	chr2	128324217:128324402:128327363:128327485:128331494:128331637,	128327364	128327485	128327486	128327486	Splice_Site	G	A	.
ESCA	TCGA-L5-A88Z-01	DZANK1	ENST00000487128.1,ENST00000358866.6,ENST00000377630.5,ENST00000262547.5,ENST00000329494.5,ENST00000609267.1,ENST00000470526.1,ENST00000357236.4,ENST00000608192.1,ENST00000460891.1	chr20	18414295:18414409:18423990:18424108:18429627:18429632,	18423991	18424108	18424110	18424110	Splice_Site	T	C	.
ESCA	TCGA-L5-A8NG-01	TPX2	ENST00000340513.4,ENST00000300403.6	chr20	30345209:30345385:30347859:30347982:30354358:30354485,	30347860	30347982	30347859	30347859	Splice_Site	G	T	.
ESCA	TCGA-R6-A6KZ-01	NCAPD2	ENST00000382457.4,ENST00000545732.1,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6623638:6623753:6623938:6624086:6625993:6626037,	6623939	6624086	6624087	6624087	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OI-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52351367:52351518:52351813:52351979:52353854:52353931,	52351814	52351979	52351981	52351982	Splice_Site	-	A	.
ESCA	TCGA-L5-A4OI-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100933177:100933483:100962490:100962607:100996737:100996889,	100962491	100962607	100962608	100962608	Splice_Site	C	A	.
ESCA	TCGA-L5-A4OI-01	FCRL3	ENST00000477837.1,ENST00000473231.1,ENST00000368184.3,ENST00000480682.1,ENST00000492769.1,ENST00000494724.1,ENST00000485028.1,ENST00000368186.5	chr1	157659587:157659707:157660044:157660323:157665118:157665199,	157660045	157660323	157660325	157660325	Splice_Site	T	C	.
ESCA	TCGA-L5-A4OI-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000470197.1,ENST00000409857.3	chr2	75914952:75915103:75916151:75916351:75917094:75917207,	75916152	75916351	75916352	75916352	Splice_Site	C	A	.
ESCA	TCGA-L5-A4OI-01	UQCRC2	ENST00000268379.4,ENST00000561553.1,ENST00000563898.1,ENST00000563711.1	chr16	21976728:21976826:21979948:21980006:21982845:21982941,	21979949	21980006	21980007	21980007	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OI-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000577827.1,ENST00000400060.4	chr18	8379164:8379338:8380293:8380425:8384558:8384684,	8380294	8380425	8380293	8380293	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OI-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000490851.1,ENST00000401921.1,ENST00000523867.1	chr7	18868783:18868839:18869083:18869171:18875089:18875209,	18869084	18869171	18869172	18869172	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OI-01	ERCC6	ENST00000355832.5,ENST00000542458.1	chr10	50682072:50682288:50684260:50684356:50686399:50686516,	50684261	50684356	50684358	50684358	Splice_Site	T	C	.
ESCA	TCGA-L5-A4OI-01	GZF1	ENST00000377051.2,ENST00000338121.5	chr20	23345855:23346384:23347639:23347734:23349398:23349544,	23347640	23347734	23347639	23347639	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OI-01	SNX1	ENST00000559844.1,ENST00000261889.5,ENST00000560260.1,ENST00000561026.1,ENST00000380285.3,ENST00000560829.1	chr15	64422426:64422520:64423885:64424091:64426862:64427000,	64423886	64424091	64424092	64424092	Splice_Site	G	A	.
ESCA	TCGA-LN-A49Y-01	SEZ6L2	ENST00000308713.5	chr16	29908279:29908442:29909173:29909305:29910261:29910385,	29909174	29909305	29909173	29909173	Splice_Site	C	G	.
ESCA	TCGA-L5-A8NS-01	MSRB3	ENST00000308259.5	chr12	65672523:65672645:65702308:65702435:65720605:65720714,	65702309	65702435	65702437	65702437	Splice_Site	T	C	.
ESCA	TCGA-L5-A8NJ-01	SEC31A	ENST00000443462.2,ENST00000432794.1,ENST00000311785.7,ENST00000509142.1,ENST00000505472.1,ENST00000448323.1,ENST00000508502.1,ENST00000355196.2,ENST00000508479.1,ENST00000395310.2	chr4	83778841:83778917:83783686:83783725:83784470:83784545,83782783:83782861:83783686:83783725:83784470:83784545,	83783687	83783725	83783686	83783686	Splice_Site	C	T	.
ESCA	TCGA-L5-A8NJ-01	KIAA1217	ENST00000376451.2,ENST00000438429.1,ENST00000396446.1,ENST00000307544.6,ENST00000376452.3,ENST00000376456.4,ENST00000458595.1,ENST00000430453.2,ENST00000396445.1	chr10	24762156:24762989:24784075:24784125:24790307:24790474,	24784076	24784125	24784075	24784075	Splice_Site	G	T	.
ESCA	TCGA-L5-A8NJ-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24951176:24951345:24952369:24952684:24962300:24962402,	24952370	24952684	24952369	24952369	Splice_Site	G	A	.
ESCA	TCGA-L5-A8NQ-01	SIM1	ENST00000369208.3,ENST00000262901.4	chr6	100838958:100838967:100841362:100841765:100868665:100868834,	100841363	100841765	100841766	100841766	Splice_Site	C	G	.
ESCA	TCGA-L5-A8NQ-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47541469:47541532:47542021:47542072:47542409:47542445,	47542022	47542072	47542073	47542073	Splice_Site	G	A	.
ESCA	TCGA-R6-A8W8-01	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70915182:70915291:70918250:70918371:70925814:70925950,	70918251	70918371	70918373	70918373	Splice_Site	T	C	.
ESCA	TCGA-R6-A8W8-01	AHCY	ENST00000538132.1,ENST00000480653.1,ENST00000217426.2	chr20	32868832:32868971:32873245:32873440:32878137:32878255,	32873246	32873440	32873245	32873245	Splice_Site	C	G	.
ESCA	TCGA-R6-A8W8-01	SLC38A6	ENST00000525723.2	chr14	61518797:61518853:61519066:61519703:61545527:61545645,	61519067	61519703	61519066	61519066	Splice_Site	G	A	.
ESCA	TCGA-L5-A8NT-01	GCC2	ENST00000409821.1,ENST00000309863.6	chr2	109066088:109066145:109067483:109067568:109068854:109068922,	109067484	109067568	109067483	109067483	Splice_Site	G	A	.
ESCA	TCGA-Z6-A8JE-01	GCC2	ENST00000409821.1,ENST00000309863.6	chr2	109066088:109066145:109067483:109067568:109068854:109068922,	109067484	109067568	109067569	109067569	Splice_Site	G	A	.
ESCA	TCGA-Z6-A8JE-01	KIAA1328	ENST00000543923.1,ENST00000280020.5,ENST00000592611.1,ENST00000591619.1	chr18	34647302:34647508:34740162:34740344:34752935:34753044,	34740163	34740344	34740346	34740346	Splice_Site	T	A	.
ESCA	TCGA-Z6-A8JE-01	PARVA	ENST00000530755.1,ENST00000538608.1,ENST00000528916.1,ENST00000550549.1,ENST00000539723.1,ENST00000334956.8,ENST00000533345.1	chr11	12495291:12495381:12495459:12495530:12499393:12499471,	12495460	12495530	12495459	12495459	Splice_Site	G	T	.
ESCA	TCGA-Z6-A8JE-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79373328:79373508:79385174:79385299:79385596:79385737,	79385175	79385299	79385300	79385300	Splice_Site	G	T	.
ESCA	TCGA-L5-A88T-01	HDDC3	ENST00000394272.3,ENST00000561036.1,ENST00000494993.1	chr15	91474566:91474635:91474933:91475174:91475284:91475340,	91474934	91475174	91475176	91475176	Splice_Site	T	C	.
ESCA	TCGA-2H-A9GL-01	LRCH1	ENST00000463929.1,ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47261986:47262114:47263267:47263331:47266670:47266712,	47263268	47263331	47263267	47263267	Splice_Site	G	A	.
ESCA	TCGA-LN-A8HZ-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574035	7574035	Splice_Site	T	G	.
ESCA	TCGA-L5-A8NL-01	DNAJB6	ENST00000486083.2,ENST00000262177.4,ENST00000429029.2,ENST00000488001.1,ENST00000459889.1,ENST00000441291.1,ENST00000441561.1,ENST00000443280.1	chr7	157129748:157129838:157151240:157151331:157155854:157155924,	157151241	157151331	157151332	157151332	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OE-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000396085.1,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20070273:20070741:20072834:20072879:20075625:20075786,20071381:20071447:20072834:20072879:20075625:20075786,	20072835	20072879	20072880	20072880	Splice_Site	G	T	.
ESCA	TCGA-JY-A6FD-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20784854:20785061:20792982:20793129:20795049:20795247,	20792983	20793129	20792982	20792982	Splice_Site	G	T	.
ESCA	TCGA-LN-A49L-01	GRIA1	ENST00000448073.4,ENST00000340592.5	chr5	153149727:153149975:153175035:153175150:153181915:153182050,	153175036	153175150	153175034	153175034	Splice_Site	A	G	.
ESCA	TCGA-LN-A49L-01	DYNC1I1	ENST00000324972.6,ENST00000457059.1,ENST00000447467.2	chr7	95442591:95442649:95457368:95457428:95499194:95499310,	95457369	95457428	95457368	95457368	Splice_Site	G	A	.
ESCA	TCGA-JY-A939-01	UBE2F	ENST00000409633.1,ENST00000417231.1,ENST00000439338.1,ENST00000434137.2,ENST00000409953.1,ENST00000434655.1,ENST00000272930.4,ENST00000433241.1,ENST00000439780.1	chr2	238903385:238903451:238925207:238925275:238933982:238934053,	238925208	238925275	238925207	238925207	Splice_Site	G	T	.
ESCA	TCGA-JY-A939-01	RPAIN	ENST00000405578.4,ENST00000381209.3	chr17	5329295:5329402:5329555:5329619:5335861:5335928,5326088:5326149:5329555:5329619:5331390:5331531,5326088:5326149:5329555:5329619:5335861:5335928,5329295:5329402:5329555:5329619:5331390:5331531,	5329556	5329619	5329555	5329555	Splice_Site	G	T	.
ESCA	TCGA-L5-A8NE-01	FURIN	ENST00000268171.3	chr15	91420364:91420441:91420756:91420845:91421361:91421534,	91420757	91420845	91420846	91420846	Splice_Site	G	A	.
ESCA	TCGA-2H-A9GM-01	FARP2	ENST00000545004.1,ENST00000373287.4	chr2	242295713:242295803:242312498:242312705:242343242:242343317,	242312499	242312705	242312706	242312706	Splice_Site	G	T	.
ESCA	TCGA-2H-A9GM-01	ENPP3	ENST00000470930.1	chr6	131971166:131971289:131973681:131973807:131979462:131979560,	131973682	131973807	131973681	131973681	Splice_Site	G	T	.
ESCA	TCGA-R6-A6Y0-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577017	7577017	Splice_Site	A	C	.
ESCA	TCGA-R6-A6Y0-01	SPARCL1	ENST00000541496.1	chr4	88416164:88416279:88420672:88420737:88450196:88450244,88416132:88416295:88420672:88420737:88450196:88450244,	88420673	88420737	88420738	88420738	Splice_Site	C	A	.
ESCA	TCGA-R6-A6Y0-01	AACS	ENST00000536752.1,ENST00000261686.6,ENST00000418937.2	chr12	125549986:125550263:125558421:125558525:125561036:125561157,	125558422	125558525	125558421	125558421	Splice_Site	G	T	.
ESCA	TCGA-R6-A6Y0-01	UBR2	ENST00000372883.3,ENST00000372899.1,ENST00000372901.1	chr6	42650792:42650849:42652531:42652609:42655953:42656124,	42652532	42652609	42652531	42652531	Splice_Site	G	T	.
ESCA	TCGA-R6-A6Y0-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086106	109086106	Splice_Site	G	T	.
ESCA	TCGA-LN-A49P-01	RBM6	ENST00000442092.1,ENST00000443081.1,ENST00000422955.1,ENST00000446471.1,ENST00000454079.1,ENST00000464013.1,ENST00000266022.4,ENST00000425608.1,ENST00000483350.1,ENST00000441115.1,ENST00000434592.1	chr3	50085677:50085752:50091767:50091828:50095160:50095239,	50091768	50091828	50091767	50091767	Splice_Site	G	T	.
ESCA	TCGA-V5-A7RC-01	SEC63	ENST00000429168.1,ENST00000369002.4	chr6	108230211:108230239:108232549:108232600:108233919:108233978,	108232550	108232600	108232548	108232548	Splice_Site	A	C	.
ESCA	TCGA-V5-A7RC-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577018	7577018	Splice_Site	C	T	.
ESCA	TCGA-V5-A7RC-01	DEF6	ENST00000316637.5	chr6	35280078:35280315:35280402:35280549:35285667:35285776,	35280403	35280549	35280402	35280402	Splice_Site	G	T	.
ESCA	TCGA-2H-A9GQ-01	FAM76A	ENST00000373954.6,ENST00000373949.1,ENST00000530324.1	chr1	28053982:28054047:28059113:28059168:28060541:28060694,	28059114	28059168	28059113	28059113	Splice_Site	G	T	.
ESCA	TCGA-2H-A9GR-01	TRPM7	ENST00000313478.7,ENST00000560955.1,ENST00000560284.1	chr15	50886625:50886810:50888451:50888578:50891318:50891443,	50888452	50888578	50888579	50888579	Splice_Site	C	A	.
ESCA	TCGA-2H-A9GR-01	USP43	ENST00000574408.1	chr17	9569964:9570068:9578207:9578300:9580062:9580198,9559752:9559851:9578207:9578300:9580062:9580198,	9578208	9578300	9578207	9578207	Splice_Site	G	T	.
ESCA	TCGA-2H-A9GR-01	CLEC7A	ENST00000534609.1	chr12	10277895:10278047:10279169:10280444:10282578:10282681,	10279170	10280444	10280446	10280446	Splice_Site	T	A	.
ESCA	TCGA-2H-A9GR-01	CLEC7A	ENST00000528799.1,ENST00000298523.5	chr12	10277895:10278047:10280345:10280444:10282578:10282681,	10280346	10280444	10280446	10280446	Splice_Site	T	A	.
ESCA	TCGA-L5-A8NF-01	TYW1	ENST00000359626.5	chr7	66514935:66515053:66520821:66520874:66532271:66532390,	66520822	66520874	66520821	66520821	Splice_Site	G	T	.
ESCA	TCGA-R6-A6XG-01	PDS5A	ENST00000303538.8	chr4	39881347:39881453:39891868:39891984:39900008:39900148,	39891869	39891984	39891985	39891985	Splice_Site	C	A	.
ESCA	TCGA-L5-A893-01	TLN2	ENST00000306829.6,ENST00000561311.1	chr15	63011965:63012079:63014551:63014686:63017174:63017303,	63014552	63014686	63014551	63014551	Splice_Site	G	T	.
ESCA	TCGA-L5-A893-01	CACNA1C	ENST00000347598.4,ENST00000399606.1	chr12	2705039:2705169:2706395:2706455:2711019:2711126,2705039:2705169:2706395:2706455:2706602:2706662,	2706396	2706455	2706457	2706457	Splice_Site	T	G	.
ESCA	TCGA-2H-A9GF-01	MCPH1	ENST00000344683.5,ENST00000519480.1	chr8	6289019:6289107:6293568:6293683:6296473:6296617,	6293569	6293683	6293568	6293568	Splice_Site	G	T	.
ESCA	TCGA-2H-A9GF-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306336	179306336	Splice_Site	C	T	.
ESCA	TCGA-KH-A6WC-01	FASN	ENST00000306749.2	chr17	80039476:80039719:80039884:80040036:80040198:80040290,	80039885	80040036	80039884	80039884	Splice_Site	C	G	.
ESCA	TCGA-JY-A6FB-01	AHSG	ENST00000478441.1,ENST00000273784.5	chr3	186330873:186331143:186333473:186333584:186334231:186334316,	186333474	186333584	186333473	186333473	Splice_Site	G	T	.
ESCA	TCGA-JY-A6FB-01	ZIK1	ENST00000597850.1	chr19	58095627:58095980:58096319:58096358:58099906:58099983,58095627:58095757:58096319:58096358:58099906:58099983,	58096320	58096358	58096319	58096319	Splice_Site	G	T	.
ESCA	TCGA-VR-A8EY-01	ABHD16A	ENST00000375842.4,ENST00000440843.2,ENST00000395952.3,ENST00000492084.1,ENST00000538874.1,ENST00000495769.1,ENST00000482224.1,ENST00000468037.1,ENST00000498420.1	chr6	31661135:31661209:31664724:31664810:31668718:31668805,	31664725	31664810	31664812	31664812	Splice_Site	T	G	.
ESCA	TCGA-VR-A8EY-01	PDE3A	ENST00000359062.3,ENST00000544307.1	chr12	20782841:20783061:20786626:20786712:20787835:20787990,	20786627	20786712	20786713	20786713	Splice_Site	G	T	.
ESCA	TCGA-VR-A8EY-01	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33549311:33549488:33561131:33561284:33576158:33577265,	33561132	33561284	33561131	33561131	Splice_Site	C	T	.
ESCA	TCGA-JY-A93D-01	MRPS14	ENST00000476371.1	chr1	174983380:174983987:174987553:174987712:174992499:174992561,	174987554	174987712	174987553	174987553	Splice_Site	C	T	.
ESCA	TCGA-JY-A93D-01	LBH	ENST00000406087.1	chr2	30454402:30454630:30457270:30457377:30480298:30480414,	30457271	30457377	30457270	30457270	Splice_Site	G	A	.
ESCA	TCGA-R6-A8WC-01	FAM19A1	ENST00000478136.1,ENST00000496687.1	chr3	68466432:68466570:68587906:68588031:68593636:68594772,	68587907	68588031	68588032	68588032	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OX-01	NPNT	ENST00000427316.2,ENST00000506666.1,ENST00000503451.1	chr4	106848492:106848585:106853770:106853860:106858165:106858285,	106853771	106853860	106853770	106853770	Splice_Site	G	T	.
ESCA	TCGA-LN-A7HV-01	ABCB8	ENST00000482899.1,ENST00000498578.1,ENST00000542328.1,ENST00000358849.4,ENST00000482309.1,ENST00000297504.6,ENST00000466514.1,ENST00000356058.4,ENST00000470645.1	chr7	150737914:150738009:150738185:150738319:150739047:150739117,	150738186	150738319	150738320	150738320	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OR-01	C20orf194	ENST00000252032.9,ENST00000453730.2	chr20	3297369:3297440:3298935:3299047:3302863:3302909,	3298936	3299047	3299048	3299048	Splice_Site	C	T	.
ESCA	TCGA-L5-A4OR-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766990	53766990	Splice_Site	G	A	.
ESCA	TCGA-VR-A8EP-01	GSK3B	ENST00000264235.8,ENST00000316626.5	chr3	119595259:119595355:119624601:119624699:119631550:119631657,	119624602	119624699	119624601	119624601	Splice_Site	C	A	.
ESCA	TCGA-IG-A3QL-01	WDR81	ENST00000419248.1,ENST00000446363.1,ENST00000437219.2,ENST00000309182.5,ENST00000409644.1,ENST00000545662.1	chr17	1638865:1639011:1639332:1639512:1640658:1641448,	1639333	1639512	1639332	1639332	Splice_Site	G	T	.
ESCA	TCGA-L5-A8NW-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635918	33635918	Splice_Site	G	T	.
ESCA	TCGA-L5-A8NW-01	FILIP1	ENST00000393004.2	chr6	76001574:76005666:76018555:76018613:76022112:76024918,	76018556	76018613	76018615	76018615	Splice_Site	T	A	.
ESCA	TCGA-L5-A8NW-01	DOCK5	ENST00000276440.7,ENST00000481100.1	chr8	25042379:25042466:25101189:25101273:25126360:25126401,	25101190	25101273	25101274	25101274	Splice_Site	G	A	.
ESCA	TCGA-L5-A43M-01	CKAP5	ENST00000533413.1,ENST00000526876.2,ENST00000529230.1,ENST00000415402.1	chr11	46775038:46775047:46776437:46776617:46780472:46780593,	46776438	46776617	46776437	46776437	Splice_Site	C	A	.
ESCA	TCGA-L5-A43M-01	CKAP5	ENST00000527333.1	chr11	46775038:46775047:46776437:46776533:46780472:46780593,	46776438	46776533	46776437	46776437	Splice_Site	C	A	.
ESCA	TCGA-LN-A49W-01	DPYD	ENST00000370192.3	chr1	97564044:97564188:97658624:97658804:97700407:97700550,	97658625	97658804	97658623	97658623	Splice_Site	A	C	.
ESCA	TCGA-LN-A49W-01	SCRN3	ENST00000409673.3	chr2	175260470:175260545:175263093:175263170:175264649:175264826,	175263094	175263170	175263171	175263171	Splice_Site	G	T	.
ESCA	TCGA-LN-A49W-01	SCRN3	ENST00000458563.1	chr2	175260470:175260545:175263002:175263170:175264649:175264826,175260519:175260717:175263002:175263170:175264649:175264831,175262063:175262132:175263002:175263170:175264649:175264831,	175263003	175263170	175263171	175263171	Splice_Site	G	T	.
ESCA	TCGA-IG-A3I8-01	YLPM1	ENST00000238571.3,ENST00000547879.1,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7,ENST00000554107.1	chr14	75283940:75283980:75284933:75285017:75287759:75287840,	75284934	75285017	75284933	75284933	Splice_Site	G	T	.
ESCA	TCGA-IG-A3I8-01	RASA2	ENST00000286364.3,ENST00000452898.1,ENST00000509118.1,ENST00000509032.1	chr3	141299209:141299293:141299941:141300019:141304866:141304940,	141299942	141300019	141299941	141299941	Splice_Site	G	T	.
ESCA	TCGA-L5-A8NV-01	TYRO3	ENST00000560227.1,ENST00000263798.3,ENST00000559066.1	chr15	41857223:41857339:41859557:41859735:41860414:41860463,	41859558	41859735	41859736	41859736	Splice_Site	G	C	.
ESCA	TCGA-IG-A4P3-01	NCAPG	ENST00000514176.1,ENST00000513226.1	chr4	17812650:17812811:17813843:17814047:17814539:17814768,	17813844	17814047	17813843	17813843	Splice_Site	G	T	.
ESCA	TCGA-IG-A4P3-01	SEC24A	ENST00000398844.2,ENST00000322887.4	chr5	134002512:134002686:134007498:134007576:134010304:134010465,	134007499	134007576	134007577	134007577	Splice_Site	G	T	.
ESCA	TCGA-IG-A4P3-01	PABPC1	ENST00000518716.1,ENST00000318607.5,ENST00000519004.1,ENST00000522387.1,ENST00000517403.1	chr8	101719016:101719033:101719114:101719225:101721360:101721451,	101719115	101719225	101719226	101719226	Splice_Site	C	G	.
ESCA	TCGA-L5-A4OF-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101051613:101051706:101056352:101056475:101058938:101059055,	101056353	101056475	101056352	101056352	Splice_Site	C	T	.
ESCA	TCGA-L5-A4OF-01	DHRS4	ENST00000313250.5	chr14	24429119:24429212:24434970:24435041:24435140:24435192,	24434971	24435041	24435043	24435043	Splice_Site	T	C	.
ESCA	TCGA-LN-A7HX-01	CHCHD6	ENST00000508789.1,ENST00000503119.1,ENST00000290913.3	chr3	126571489:126571573:126633522:126633593:126676258:126676394,	126633523	126633593	126633522	126633522	Splice_Site	G	T	.
ESCA	TCGA-L5-A8NN-01	RBMS2	ENST00000262031.5,ENST00000550726.1,ENST00000552247.2,ENST00000552228.1	chr12	56965481:56965639:56974967:56975047:56975182:56975292,	56974968	56975047	56974967	56974967	Splice_Site	G	T	.
ESCA	TCGA-LN-A49U-01	MTIF2	ENST00000394600.3,ENST00000263629.4,ENST00000418823.4,ENST00000403721.1	chr2	55467146:55467311:55470075:55470216:55470551:55470804,	55470076	55470216	55470218	55470218	Splice_Site	T	C	.
ESCA	TCGA-LN-A49U-01	CCNY	ENST00000339497.5,ENST00000374706.1,ENST00000265375.9,ENST00000492478.1,ENST00000493157.2,ENST00000374704.4	chr10	35790428:35790463:35805450:35805551:35814891:35814927,	35805451	35805551	35805450	35805450	Splice_Site	G	A	.
ESCA	TCGA-LN-A49U-01	SLAMF6	ENST00000368057.3	chr1	160460914:160461178:160465850:160466183:160492933:160493032,	160465851	160466183	160465850	160465850	Splice_Site	C	G	.
ESCA	TCGA-V5-AASW-01	NEK11	ENST00000510474.1,ENST00000412440.2	chr3	130884269:130884363:130889616:130889731:130947371:130947439,	130889617	130889731	130889732	130889732	Splice_Site	G	T	.
ESCA	TCGA-LN-A9FO-01	TGM3	ENST00000381458.5	chr20	2308765:2309011:2312647:2312956:2315761:2315919,	2312648	2312956	2312957	2312957	Splice_Site	G	T	.
ESCA	TCGA-2H-A9GK-01	MBIP	ENST00000318473.7,ENST00000416007.4	chr14	36774294:36774510:36777297:36777395:36780778:36780796,36769990:36770029:36777297:36777395:36780778:36780796,	36777298	36777395	36777397	36777397	Splice_Site	T	A	.
ESCA	TCGA-2H-A9GK-01	SELP	ENST00000367788.2,ENST00000367792.2,ENST00000367795.2,ENST00000458599.2,ENST00000263686.6,ENST00000367791.2,ENST00000367794.2,ENST00000367786.2,ENST00000367793.2	chr1	169586265:169586652:169588366:169588457:169599309:169599314,	169588367	169588457	169588459	169588459	Splice_Site	T	C	.
ESCA	TCGA-2H-A9GK-01	ATG7	ENST00000354449.3,ENST00000446450.2,ENST00000354956.5	chr3	11389350:11389509:11399891:11400086:11402054:11402258,	11399892	11400086	11399890	11399890	Splice_Site	A	G	.
ESCA	TCGA-L5-A8NM-01	MAN2A2	ENST00000560451.1,ENST00000558161.1,ENST00000558171.1,ENST00000557865.1,ENST00000560192.1,ENST00000360468.3,ENST00000559717.1	chr15	91453445:91453522:91453730:91453913:91454076:91454191,	91453731	91453913	91453730	91453730	Splice_Site	G	-	.
ESCA	TCGA-L7-A56G-01	CIAO1	ENST00000272402.2	chr2	96933573:96933662:96934194:96935093:96936848:96937383,	96934195	96935093	96934194	96934194	Splice_Site	G	T	.
ESCA	TCGA-LN-A9FP-01	ARRB2	ENST00000571428.1,ENST00000570739.1	chr17	4614018:4614039:4619267:4619328:4619441:4619486,4614018:4614039:4619267:4619328:4619706:4619810,	4619268	4619328	4619267	4619267	Splice_Site	G	C	.
ESCA	TCGA-LN-A9FP-01	WRN	ENST00000298139.5,ENST00000521620.1	chr8	31001065:31001139:31004568:31004644:31004879:31004992,	31004569	31004644	31004645	31004645	Splice_Site	G	T	.
ESCA	TCGA-LN-A9FP-01	PHB	ENST00000504124.1,ENST00000300408.3,ENST00000512041.2,ENST00000508009.1,ENST00000446735.1,ENST00000419140.2	chr17	47484122:47484216:47486403:47486520:47486692:47486835,	47486404	47486520	47486521	47486521	Splice_Site	C	A	.
ESCA	TCGA-LN-A9FP-01	CRB1	ENST00000538660.1,ENST00000484075.1,ENST00000535699.1,ENST00000543483.1,ENST00000475659.1,ENST00000367400.3	chr1	197313410:197313606:197316469:197316609:197325960:197326143,	197316470	197316609	197316469	197316469	Splice_Site	G	T	.
ESCA	TCGA-LN-A9FR-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	G	.
ESCA	TCGA-LN-A49X-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15296067:15296219:15296297:15296490:15297688:15297799,	15296298	15296490	15296491	15296491	Splice_Site	C	T	.
ESCA	TCGA-LN-A4MQ-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685269	89685269	Splice_Site	G	A	.
ESCA	TCGA-L5-A43I-01	ITIH5	ENST00000434980.1,ENST00000446830.2,ENST00000397146.2,ENST00000476417.1,ENST00000397145.2,ENST00000298441.6,ENST00000256861.6,ENST00000461751.1	chr10	7618854:7618975:7621717:7622027:7627863:7628032,	7621718	7622027	7621717	7621717	Splice_Site	C	A	.
ESCA	TCGA-L5-A43I-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865875	41865875	Splice_Site	A	T	.
ESCA	TCGA-IG-A625-01	BUB1	ENST00000535254.1,ENST00000302759.6	chr2	111398610:111398782:111398883:111399041:111399218:111399266,	111398884	111399041	111398882	111398882	Splice_Site	G	T	.
ESCA	TCGA-IG-A625-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944321:139944441:139944735:139944990:139945353:139945503,	139944736	139944990	139944734	139944734	Splice_Site	A	G	.
ESCA	TCGA-IG-A625-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	A	.
ESCA	TCGA-L5-A88S-01	MIOX	ENST00000451761.1,ENST00000395732.3,ENST00000216075.6	chr22	50927661:50927724:50927825:50927875:50927960:50928059,	50927826	50927875	50927825	50927825	Splice_Site	G	A	.
ESCA	TCGA-Z6-A8JD-01	JAKMIP1	ENST00000409021.3,ENST00000473053.1,ENST00000457227.2,ENST00000410077.2,ENST00000282924.5,ENST00000409831.1	chr4	6066606:6066735:6081898:6082039:6083335:6083482,6080665:6080725:6081898:6082039:6083335:6083482,	6081899	6082039	6082040	6082040	Splice_Site	C	G	.
ESCA	TCGA-Z6-A8JD-01	CDKAL1	ENST00000378624.4,ENST00000274695.4,ENST00000378610.1	chr6	20758825:20758874:20781375:20781496:20846305:20846409,	20781376	20781496	20781375	20781375	Splice_Site	G	T	.
ESCA	TCGA-Z6-A8JD-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597511	52597511	Splice_Site	T	C	.
ESCA	TCGA-Z6-A8JD-01	PBRM1	ENST00000394830.3	chr3	52595782:52595984:52597379:52597509:52598065:52598249,	52597380	52597509	52597511	52597511	Splice_Site	T	C	.
ESCA	TCGA-Z6-A8JD-01	UBE2F	ENST00000409633.1,ENST00000417231.1,ENST00000454786.1,ENST00000439338.1,ENST00000480828.1,ENST00000441728.2,ENST00000434137.2,ENST00000409953.1,ENST00000434655.1,ENST00000272930.4,ENST00000482096.1,ENST00000414443.1,ENST00000409332.1,ENST00000416292.1,ENST00000445676.1,ENST00000440223.1	chr2	238933982:238934053:238939196:238939254:238940862:238940895,	238939197	238939254	238939255	238939255	Splice_Site	G	T	.
ESCA	TCGA-JY-A6FG-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29362337:29362435:29365765:29365938:29379615:29379824,	29365766	29365938	29365939	29365939	Splice_Site	G	A	.
ESCA	TCGA-JY-A6FG-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75156763:75157410:75171619:75171738:75227095:75227855,	75171620	75171738	75171619	75171619	Splice_Site	C	T	.
ESCA	TCGA-JY-A6FG-01	IFT140	ENST00000397417.2,ENST00000565298.1,ENST00000439987.2,ENST00000426508.2	chr16	1618217:1618335:1621407:1621535:1630759:1630851,	1621408	1621535	1621406	1621406	Splice_Site	A	G	.
ESCA	TCGA-IG-A97H-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927734	57927734	Splice_Site	A	T	.
ESCA	TCGA-IG-A97H-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578291	7578291	Splice_Site	T	A	.
ESCA	TCGA-V5-A7RB-01	TBC1D1	ENST00000406664.1	chr4	38119653:38119813:38126582:38126752:38134704:38134878,38121574:38121729:38126582:38126752:38134704:38134878,	38126583	38126752	38126581	38126581	Splice_Site	A	T	.
ESCA	TCGA-L5-A8NK-01	TRMT11	ENST00000334379.5,ENST00000453993.2,ENST00000368332.3	chr6	126320685:126320759:126329537:126329618:126332398:126332420,	126329538	126329618	126329537	126329537	Splice_Site	G	T	.
ESCA	TCGA-M9-A5M8-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000522124.1,ENST00000518864.1	chr8	51571151:51571223:51617159:51617312:51621445:51621538,	51617160	51617312	51617159	51617159	Splice_Site	G	A	.
ESCA	TCGA-M9-A5M8-01	PCSK1	ENST00000311106.3,ENST00000508626.1	chr5	95743926:95744027:95746477:95746690:95748021:95748194,	95746478	95746690	95746477	95746477	Splice_Site	C	T	.
ESCA	TCGA-M9-A5M8-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970899	21970899	Splice_Site	A	G	.
ESCA	TCGA-JY-A6FH-01	MAP3K8	ENST00000263056.1,ENST00000375321.1,ENST00000542547.1	chr10	30739186:30739448:30740566:30740673:30747012:30747165,	30740567	30740673	30740566	30740566	Splice_Site	G	T	.
ESCA	TCGA-JY-A6FH-01	ARSA	ENST00000216124.5,ENST00000395619.3,ENST00000547307.1,ENST00000453344.2,ENST00000395621.3,ENST00000356098.5,ENST00000547805.1	chr22	51065018:51065188:51065261:51065480:51065593:51065834,	51065262	51065480	51065261	51065261	Splice_Site	C	T	.
ESCA	TCGA-JY-A6FH-01	LEPR	ENST00000462765.1	chr1	65991371:65991501:66031228:66031288:66036155:66036485,	66031229	66031288	66031227	66031227	Splice_Site	A	G	.
ESCA	TCGA-Q9-A6FU-01	OTUD6B	ENST00000285420.4	chr8	92083365:92083517:92086058:92086139:92090583:92090896,	92086059	92086139	92086058	92086058	Splice_Site	G	C	.
ESCA	TCGA-Z6-AAPN-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58458871:58458998:58465266:58465404:58467116:58467235,	58465267	58465404	58465266	58465266	Splice_Site	G	T	.
ESCA	TCGA-Z6-AAPN-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324464	31324464	Splice_Site	C	A	.
ESCA	TCGA-Z6-AAPN-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324463	31324463	Splice_Site	A	G	.
ESCA	TCGA-Z6-AAPN-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000458012.2,ENST00000537335.1,ENST00000333990.6,ENST00000448770.1,ENST00000263331.5,ENST00000417433.2	chr2	113330218:113330335:113331138:113331392:113332423:113332666,	113331139	113331392	113331138	113331138	Splice_Site	G	A	.
ESCA	TCGA-VR-A8EW-01	DRG1	ENST00000433341.1,ENST00000331457.4	chr22	31796605:31796729:31799014:31799190:31806997:31807046,	31799015	31799190	31799191	31799191	Splice_Site	G	A	.
ESCA	TCGA-VR-A8EW-01	PTCH1	ENST00000331920.6,ENST00000375290.2,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375274.2	chr9	98239040:98239139:98239828:98239984:98240336:98240468,	98239829	98239984	98239986	98239986	Splice_Site	T	A	.
ESCA	TCGA-L5-A8NI-01	GRK4	ENST00000505271.1	chr4	3029638:3029728:3030927:3031136:3042298:3042454,	3030928	3031136	3030927	3030927	Splice_Site	G	T	.
ESCA	TCGA-L5-A8NI-01	MUC5B	ENST00000525715.1,ENST00000529681.1,ENST00000447027.1	chr11	1246910:1246967:1247434:1247506:1247844:1248106,	1247435	1247506	1247507	1247507	Splice_Site	G	A	.
ESCA	TCGA-L5-A8NI-01	RARS2	ENST00000369536.5	chr6	88224124:88224217:88224674:88224738:88226523:88226598,	88224675	88224738	88224740	88224740	Splice_Site	T	C	.
ESCA	TCGA-L5-A8NI-01	DRD2	ENST00000362072.3,ENST00000544518.1,ENST00000542968.1	chr11	113283277:113283605:113285096:113285183:113286142:113286333,	113285097	113285183	113285184	113285184	Splice_Site	C	A	.
ESCA	TCGA-LN-A8I1-01	RNF14	ENST00000394514.2	chr5	141350268:141350442:141353147:141353307:141357867:141357959,	141353148	141353307	141353308	141353308	Splice_Site	G	T	.
ESCA	TCGA-LN-A8I1-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971208	21971208	Splice_Site	C	T	.
ESCA	TCGA-LN-A8I1-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971208	21971208	Splice_Site	C	T	.
ESCA	TCGA-LN-A8I1-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93250956:93251064:93252108:93252241,93247438:93247535:93250956:93251064:93252108:93252241,	93250957	93251064	93250956	93250956	Splice_Site	G	A	.
ESCA	TCGA-LN-A8I1-01	ASCC1	ENST00000530394.1	chr10	73857011:73857208:73862091:73862170:73862607:73862725,73857011:73857208:73862091:73862170:73887839:73887925,	73862092	73862170	73862091	73862091	Splice_Site	C	A	.
ESCA	TCGA-L5-A4OH-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301047	179301047	Splice_Site	C	T	.
ESCA	TCGA-L5-A4OH-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189860417:189860516:189860850:189860904:189861123:189861222,	189860851	189860904	189860905	189860905	Splice_Site	G	A	.
ESCA	TCGA-Q9-A6FW-01	ZNF280D	ENST00000267807.7,ENST00000559237.1	chr15	56946395:56946432:56946582:56946701:56950621:56950684,	56946583	56946701	56946582	56946582	Splice_Site	C	T	.
ESCA	TCGA-R6-A6XQ-01	PGK1	ENST00000491291.1,ENST00000537456.1,ENST00000373316.4	chrX	77365363:77365414:77369240:77369396:77369512:77369657,	77369241	77369396	77369397	77369397	Splice_Site	G	T	.
ESCA	TCGA-R6-A6XQ-01	ATAD5	ENST00000321990.4	chr17	29206440:29206505:29214209:29214390:29219624:29219806,	29214210	29214390	29214209	29214209	Splice_Site	G	T	.
ESCA	TCGA-L5-A43C-01	PPP2R3C	ENST00000555219.1	chr14	35554741:35554984:35557156:35557216:35564253:35564390,	35557157	35557216	35557156	35557156	Splice_Site	C	A	.
ESCA	TCGA-L5-A43H-01	STAT4	ENST00000392320.2,ENST00000495849.1,ENST00000358470.4	chr2	191905790:191905874:191919215:191919260:191922743:191922837,	191919216	191919260	191919261	191919261	Splice_Site	C	A	.
ESCA	TCGA-LN-A8I0-01	INSIG1	ENST00000340368.4	chr7	155090270:155090407:155094456:155094556:155099950:155100467,155093960:155094127:155094456:155094556:155099950:155100467,	155094457	155094556	155094456	155094456	Splice_Site	G	A	.
ESCA	TCGA-LN-A8I0-01	PARM1	ENST00000307428.7	chr4	75858325:75858580:75937634:75938360:75959092:75959171,	75937635	75938360	75938361	75938361	Splice_Site	G	T	.
ESCA	TCGA-LN-A8I0-01	CSPP1	ENST00000521324.1,ENST00000521168.1,ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68089914:68089961:68092097:68092161:68102884:68102994,	68092098	68092161	68092096	68092096	Splice_Site	A	G	.
ESCA	TCGA-LN-A8I0-01	WDR3	ENST00000349139.5,ENST00000369441.3	chr1	118481102:118481181:118482099:118482195:118483449:118483563,	118482100	118482195	118482099	118482099	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OT-01	PABPC1	ENST00000518716.1,ENST00000318607.5,ENST00000519004.1,ENST00000522387.1,ENST00000517403.1	chr8	101719016:101719033:101719114:101719225:101721360:101721451,	101719115	101719225	101719226	101719226	Splice_Site	C	G	.
ESCA	TCGA-L5-A4OT-01	PDLIM1	ENST00000477757.1,ENST00000329399.6	chr10	97006971:97007123:97023620:97023820:97028534:97028619,	97023621	97023820	97023620	97023620	Splice_Site	C	G	.
ESCA	TCGA-LN-A49R-01	DGCR2	ENST00000537045.1,ENST00000263196.7	chr22	19050714:19050791:19052360:19052580:19055612:19055738,	19052361	19052580	19052582	19052582	Splice_Site	T	C	.
ESCA	TCGA-LN-A4MR-01	TSGA10	ENST00000539964.1,ENST00000393483.3,ENST00000355053.4,ENST00000410001.1	chr2	99614659:99614684:99634662:99634812:99634998:99635103,	99634663	99634812	99634813	99634813	Splice_Site	C	T	.
ESCA	TCGA-VR-A8EO-01	DNAAF1	ENST00000567918.1,ENST00000563093.1,ENST00000378553.5,ENST00000570298.1	chr16	84178921:84179169:84182611:84182747:84183855:84183947,	84182612	84182747	84182611	84182611	Splice_Site	G	T	.
ESCA	TCGA-L5-A8NU-01	CMC1	ENST00000423894.1	chr3	28304781:28304871:28357823:28357914:28360999:28361232,28283108:28283303:28357823:28357914:28360999:28361232,	28357824	28357914	28357823	28357823	Splice_Site	G	C	.
ESCA	TCGA-L5-A4OJ-01	OGT	ENST00000455587.1,ENST00000373719.3,ENST00000373701.3	chrX	70764416:70764485:70767756:70767873:70774362:70774442,	70767757	70767873	70767756	70767756	Splice_Site	G	T	.
ESCA	TCGA-L5-A4OJ-01	EGFL6	ENST00000361306.1,ENST00000380602.3	chrX	13612954:13613047:13618093:13618213:13621435:13621555,	13618094	13618213	13618214	13618214	Splice_Site	G	T	.
ESCA	TCGA-LN-A4A5-01	CCDC62	ENST00000392441.4,ENST00000341952.4,ENST00000392440.2,ENST00000537566.1,ENST00000253079.6	chr12	123281853:123281942:123282631:123282747:123285670:123286399,	123282632	123282747	123282748	123282748	Splice_Site	G	T	.
ESCA	TCGA-L7-A6VZ-01	SLC46A1	ENST00000584729.1,ENST00000440501.1	chr17	26727724:26727783:26729255:26729339:26731633:26731839,	26729256	26729339	26729340	26729340	Splice_Site	C	A	.
ESCA	TCGA-LN-A9FQ-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71795080:71795212:71795301:71795468:71796949:71797064,	71795302	71795468	71795469	71795469	Splice_Site	G	A	.
ESCA	TCGA-VR-AA4G-01	PANK3	ENST00000520504.1	chr5	167986036:167986162:167988397:167988521:167990893:167991070,167986036:167986162:167988397:167988521:167993017:167993069,	167988398	167988521	167988397	167988397	Splice_Site	C	T	.
ESCA	TCGA-VR-A8ET-01	C4orf47	ENST00000508698.1,ENST00000378850.4	chr4	186361693:186361873:186366117:186366284:186370749:186370822,	186366118	186366284	186366117	186366117	Splice_Site	G	T	.
ESCA	TCGA-VR-A8ET-01	ZWINT	ENST00000395405.1,ENST00000361148.6,ENST00000373944.3	chr10	58119447:58119614:58119778:58119902:58120053:58120144,	58119779	58119902	58119778	58119778	Splice_Site	C	T	.
ESCA	TCGA-V5-A7RE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577017	7577017	Splice_Site	A	C	.
ESCA	TCGA-JY-A938-01	CATSPERB	ENST00000256343.3	chr14	92150220:92150287:92157866:92157899:92159469:92159588,	92157867	92157899	92157865	92157865	Splice_Site	A	G	.
ESCA	TCGA-JY-A938-01	PRKDC	ENST00000523565.1,ENST00000314191.2,ENST00000521331.1	chr8	48691564:48691654:48694722:48694815:48694938:48695152,	48694723	48694815	48694817	48694817	Splice_Site	T	G	.
ESCA	TCGA-VR-A8EU-01	DDX1	ENST00000381341.2,ENST00000233084.3	chr2	15753347:15753408:15757367:15757466:15758304:15758394,	15757368	15757466	15757366	15757366	Splice_Site	A	G	.
ESCA	TCGA-VR-A8EU-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000440600.2	chr1	212118125:212118311:212119948:212120047:212125910:212126043,	212119949	212120047	212120048	212120048	Splice_Site	C	T	.
ESCA	TCGA-VR-A8EU-01	C4orf47	ENST00000511138.1,ENST00000511581.1,ENST00000378850.4	chr4	186350543:186350665:186353135:186353355:186357199:186357285,	186353136	186353355	186353356	186353356	Splice_Site	G	A	.
ESCA	TCGA-LN-A7HY-01	SFXN5	ENST00000272433.2,ENST00000463277.1,ENST00000474528.1	chr2	73198698:73198814:73215386:73215477:73226077:73226143,	73215387	73215477	73215478	73215478	Splice_Site	C	G	.
ESCA	TCGA-VR-A8EQ-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000380432.2,ENST00000602925.1	chr9	19316618:19316837:19324359:19324505:19325936:19325972,	19324360	19324505	19324506	19324506	Splice_Site	G	T	.
ESCA	TCGA-IG-A50L-01	MS4A12	ENST00000016913.4	chr11	60264785:60265067:60268517:60268655:60269455:60269512,	60268518	60268655	60268516	60268516	Splice_Site	A	G	.
ESCA	TCGA-JY-A93F-01	SERP2	ENST00000493476.1	chr13	44948134:44948245:44953776:44953849:44971407:44971577,44948134:44948245:44953776:44953849:44964492:44964714,	44953777	44953849	44953850	44953850	Splice_Site	G	C	.
ESCA	TCGA-JY-A93F-01	KIAA1109	ENST00000495260.1,ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123145655:123145832:123147861:123147990:123150275:123150350,	123147862	123147990	123147861	123147861	Splice_Site	G	A	.
ESCA	TCGA-JY-A93F-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709465	176709465	Splice_Site	G	A	.
ESCA	TCGA-V5-AASV-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80880998	80880998	Splice_Site	G	A	.
ESCA	TCGA-V5-AASV-01	LGR6	ENST00000487787.1,ENST00000367278.3,ENST00000439764.2,ENST00000255432.7	chr1	202275995:202276067:202276457:202276529:202278178:202278304,	202276458	202276529	202276457	202276457	Splice_Site	G	T	.
ESCA	TCGA-L5-A891-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99856028:99856147:99857048:99857220:99858616:99858840,	99857049	99857220	99857222	99857222	Splice_Site	T	C	.
ESCA	TCGA-VR-AA7B-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000323981.2	chr11	93469455:93469470:93469859:93469917:93470229:93470405,	93469860	93469917	93469859	93469859	Splice_Site	C	G	.
ESCA	TCGA-VR-AA7B-01	KIAA1328	ENST00000543923.1,ENST00000587139.1,ENST00000280020.5,ENST00000590617.1,ENST00000592611.1,ENST00000591619.1	chr18	34740162:34740344:34752935:34753044:34801979:34802080,	34752936	34753044	34752935	34752935	Splice_Site	G	T	.
ESCA	TCGA-R6-A8WG-01	DYNC1H1	ENST00000360184.4,ENST00000556791.1,ENST00000553423.1	chr14	102500473:102500525:102500661:102500789:102502825:102502979,	102500662	102500789	102500661	102500661	Splice_Site	G	A	.
ESCA	TCGA-R6-A8WG-01	TMEM214	ENST00000425720.1,ENST00000444135.1,ENST00000435172.1,ENST00000404032.3,ENST00000321326.7,ENST00000238788.9	chr2	27261013:27261105:27261351:27261400:27261569:27261662,	27261352	27261400	27261402	27261402	Splice_Site	T	C	.
ESCA	TCGA-IG-A51D-01	CEP104	ENST00000494653.1,ENST00000378230.3	chr1	3753855:3754083:3755527:3755683:3756171:3756340,	3755528	3755683	3755527	3755527	Splice_Site	C	A	.
ESCA	TCGA-IG-A51D-01	EDEM2	ENST00000542871.1	chr20	33714053:33714178:33719444:33719586:33721907:33721958,33714053:33714178:33719444:33719586:33722540:33722752,33714053:33714178:33719444:33719586:33730175:33730281,	33719445	33719586	33719587	33719587	Splice_Site	C	T	.
ESCA	TCGA-IG-A51D-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44948987:44949175:44949967:44950109:44966654:44966781,	44949968	44950109	44950110	44950110	Splice_Site	G	A	.
ACC	TCGA-PK-A5HB-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2,ENST00000536483.1	chr8	48686694:48686938:48689404:48689544:48690246:48690435,	48689405	48689544	48689404	48689404	Splice_Site	C	T	.
ACC	TCGA-PK-A5HB-01	AGBL2	ENST00000357610.3,ENST00000528244.1,ENST00000298861.4,ENST00000528609.1,ENST00000525123.1	chr11	47698822:47698953:47701524:47701625:47703520:47703647,	47701525	47701625	47701524	47701524	Splice_Site	C	T	.
ACC	TCGA-PK-A5HB-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000416613.1,ENST00000395314.3,ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56103166:56103254:56103915:56104082:56104496:56104565,	56103916	56104082	56103915	56103915	Splice_Site	G	A	.
ACC	TCGA-PK-A5HB-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44914925:44914997:44918528:44918705:44920866:44921042,	44918529	44918705	44918706	44918706	Splice_Site	C	T	.
ACC	TCGA-PK-A5HB-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577018	7577018	Splice_Site	C	A	.
ACC	TCGA-PK-A5HB-01	UMODL1	ENST00000408989.2,ENST00000468982.1,ENST00000400427.1,ENST00000408910.2,ENST00000400421.2,ENST00000400424.2	chr21	43508403:43508590:43510407:43510548:43519035:43519290,	43510408	43510548	43510406	43510406	Splice_Site	A	T	.
ACC	TCGA-PK-A5HB-01	ANKRD28	ENST00000399451.2,ENST00000451422.1,ENST00000498524.1,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15755033:15755148:15756084:15756163:15762421:15762629,	15756085	15756163	15756165	15756166	Splice_Site	-	G	.
ACC	TCGA-PK-A5HB-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000409571.1	chr11	64419506:64419626:64421167:64421194:64427803:64428007,	64421168	64421194	64421196	64421197	Splice_Site	-	G	.
ACC	TCGA-OR-A5LB-01	CAPN6	ENST00000324068.1,ENST00000541758.1	chrX	110496235:110496444:110497499:110497631:110506999:110507104,	110497500	110497631	110497633	110497633	Splice_Site	T	C	.
ACC	TCGA-OR-A5J5-01	AMTN	ENST00000339336.4,ENST00000504451.1	chr4	71394439:71394475:71394900:71394927:71396755:71397017,	71394901	71394927	71394929	71394930	Splice_Site	-	A	.
ACC	TCGA-OR-A5J5-01	FLT3LG	ENST00000600429.1,ENST00000597551.1,ENST00000204637.2,ENST00000600084.1,ENST00000594009.1,ENST00000595510.1	chr19	49979679:49979823:49982165:49982304:49983554:49983733,	49982166	49982304	49982165	49982166	Splice_Site	-	C	.
ACC	TCGA-OR-A5JF-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53692325:53692376:53692683:53692790:53698781:53698921,	53692684	53692790	53692791	53692791	Splice_Site	C	T	.
ACC	TCGA-OR-A5JF-01	ALG13	ENST00000394780.3,ENST00000486578.1,ENST00000470971.1,ENST00000251943.4,ENST00000436609.1	chrX	110973622:110973655:110973752:110973808:110978278:110978350,	110973753	110973808	110973752	110973752	Splice_Site	G	C	.
ACC	TCGA-OR-A5KB-01	SRSF11	ENST00000436161.2,ENST00000486667.1,ENST00000370951.1,ENST00000370950.3,ENST00000484162.1,ENST00000405432.1,ENST00000370949.1,ENST00000395136.2	chr1	70700378:70700471:70701183:70701233:70703107:70703233,	70701184	70701233	70701183	70701183	Splice_Site	G	A	.
ACC	TCGA-OR-A5KB-01	BIRC6	ENST00000421745.2	chr2	32670588:32670736:32673862:32673996:32678875:32679010,	32673863	32673996	32673862	32673862	Splice_Site	G	T	.
ACC	TCGA-OR-A5KB-01	TMEFF2	ENST00000392314.1,ENST00000272771.5	chr2	192922404:192922501:193044393:193044420:193049079:193049209,	193044394	193044420	193044393	193044393	Splice_Site	C	A	.
ACC	TCGA-OR-A5KB-01	PACRGL	ENST00000506951.1	chr4	20709425:20709493:20711305:20711396:20714410:20714454,20706282:20706437:20711305:20711396:20714410:20714454,	20711306	20711396	20711305	20711305	Splice_Site	G	C	.
ACC	TCGA-OR-A5KB-01	PDLIM5	ENST00000317968.4,ENST00000542407.1	chr4	95494501:95494544:95496766:95497185:95506715:95506888,	95496767	95497185	95497186	95497186	Splice_Site	G	T	.
ACC	TCGA-OR-A5KB-01	PDLIM5	ENST00000508531.1	chr4	95494501:95494544:95497093:95497185:95506715:95506888,95494501:95494544:95497093:95497185:95506136:95506154,95494501:95494544:95497093:95497185:95500671:95500688,	95497094	95497185	95497186	95497186	Splice_Site	G	T	.
ACC	TCGA-OR-A5KB-01	LOXL2	ENST00000520349.1,ENST00000522446.1,ENST00000389131.3,ENST00000519809.1,ENST00000518878.1	chr8	23177473:23177565:23179642:23179794:23185894:23186078,	23179643	23179794	23179795	23179795	Splice_Site	C	T	.
ACC	TCGA-OR-A5KB-01	SLC30A8	ENST00000456015.2,ENST00000427715.2,ENST00000521243.1,ENST00000519688.1	chr8	118175667:118175769:118183272:118183407:118184774:118184974,	118183273	118183407	118183272	118183272	Splice_Site	G	C	.
ACC	TCGA-OR-A5KB-01	COL5A1	ENST00000371817.3	chr9	137658299:137658344:137658845:137658899:137659155:137659200,	137658846	137658899	137658845	137658845	Splice_Site	G	T	.
ACC	TCGA-OR-A5KB-01	GPR158	ENST00000376351.3	chr10	25755579:25755648:25839904:25840014:25861577:25861816,	25839905	25840014	25839904	25839904	Splice_Site	G	T	.
ACC	TCGA-OR-A5KB-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16208328:16208501:16256127:16256217:16339991:16340199,	16256128	16256217	16256218	16256218	Splice_Site	C	A	.
ACC	TCGA-OR-A5KB-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87006823:87006865:87013337:87013484:87016977:87017047,	87013338	87013484	87013485	87013485	Splice_Site	G	T	.
ACC	TCGA-OR-A5KB-01	ZZEF1	ENST00000573183.1,ENST00000572426.1,ENST00000381638.2	chr17	3957350:3957489:3959509:3959639:3961287:3961449,	3959510	3959639	3959640	3959640	Splice_Site	C	A	.
ACC	TCGA-OR-A5KB-01	ALG13	ENST00000490774.1	chrX	110963322:110963398:110964830:110964939:110966020:110966085,110963322:110963398:110964830:110964939:110967025:110967087,	110964831	110964939	110964940	110964940	Splice_Site	G	T	.
ACC	TCGA-OR-A5KB-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000490851.1,ENST00000401921.1,ENST00000523867.1	chr7	18868783:18868839:18869083:18869171:18875089:18875209,	18869084	18869171	18869083	18869083	Splice_Site	G	-	.
ACC	TCGA-OR-A5LK-01	RBM48	ENST00000265732.5	chr7	92161717:92161863:92163715:92164284:92166164:92166848,	92163716	92164284	92164285	92164285	Splice_Site	G	T	.
ACC	TCGA-OR-A5LH-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96232106:96232208:96232435:96232567:96235824:96235893,	96232436	96232567	96232568	96232568	Splice_Site	G	A	.
ACC	TCGA-PK-A5H8-01	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000389645.3,ENST00000529307.1,ENST00000530820.1	chr11	34101174:34101312:34104371:34104424:34104501:34104588,	34104372	34104424	34104425	34104425	Splice_Site	G	T	.
ACC	TCGA-OR-A5JA-01	CPB1	ENST00000282957.4,ENST00000491148.1	chr3	148563264:148563413:148575243:148575328:148577601:148577970,	148575244	148575328	148575243	148575243	Splice_Site	G	T	.
ACC	TCGA-OR-A5JA-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579722	7579722	Splice_Site	C	A	.
ACC	TCGA-OR-A5LT-01	SLC25A19	ENST00000580273.1	chr17	73279645:73279674:73282384:73282540:73285434:73285467,	73282385	73282540	73282384	73282384	Splice_Site	C	T	.
ACC	TCGA-OR-A5J3-01	ATP6V0A2	ENST00000330342.3,ENST00000534943.1	chr12	124236829:124236949:124238966:124239084:124241361:124241533,	124238967	124239084	124239085	124239085	Splice_Site	G	A	.
ACC	TCGA-OR-A5KP-01	ZDHHC15	ENST00000373367.3,ENST00000541184.1	chrX	74644486:74644619:74648912:74649033:74649782:74649815,	74648913	74649033	74649034	74649034	Splice_Site	C	G	.
ACC	TCGA-PK-A5HA-01	SLAMF6	ENST00000368059.3,ENST00000368055.1,ENST00000368057.3	chr1	160459987:160460026:160460364:160460475:160460914:160461178,	160460365	160460475	160460476	160460476	Splice_Site	C	A	.
ACC	TCGA-OR-A5JE-01	ANKAR	ENST00000431575.2,ENST00000313581.4,ENST00000520309.1	chr2	190593385:190593547:190595220:190595327:190597832:190597955,	190595221	190595327	190595328	190595328	Splice_Site	G	T	.
ACC	TCGA-P6-A5OG-01	DES	ENST00000373960.3	chr2	220286221:220286282:220288498:220288542:220290384:220290467,	220288499	220288542	220288498	220288498	Splice_Site	G	A	.
ACC	TCGA-P6-A5OG-01	MME	ENST00000462745.1,ENST00000492661.1,ENST00000493237.1,ENST00000360490.2,ENST00000460393.1	chr3	154886520:154886586:154889905:154890001:154890324:154890401,	154889906	154890001	154890002	154890002	Splice_Site	G	T	.
ACC	TCGA-OR-A5JG-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	A	.
ACC	TCGA-OR-A5KT-01	SLC6A1	ENST00000287766.4,ENST00000536032.1	chr3	11070906:11071038:11072862:11072965:11075324:11075425,	11072863	11072965	11072862	11072862	Splice_Site	G	T	.
ACC	TCGA-OR-A5JB-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6018226:6018327:6022454:6022622:6026389:6027251,	6022455	6022622	6022454	6022454	Splice_Site	C	T	.
ACC	TCGA-PK-A5HC-01	TTR	ENST00000237014.3	chr18	29172858:29172989:29175082:29175218:29178530:29178565,	29175083	29175218	29175082	29175082	Splice_Site	G	T	.
ACC	TCGA-PK-A5HC-01	PNPLA4	ENST00000442940.1,ENST00000381042.4,ENST00000444736.1	chrX	7889753:7889889:7890044:7890139:7893980:7894173,	7890045	7890139	7890140	7890140	Splice_Site	C	T	.
ACC	TCGA-OR-A5K2-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37381614:37381690:37388683:37388787:37396591:37396678,	37388684	37388787	37388682	37388682	Splice_Site	A	T	.
ACC	TCGA-OR-A5JU-01	MEAF6	ENST00000448519.2,ENST00000296214.5,ENST00000373073.4,ENST00000487788.1,ENST00000475828.1	chr1	37975055:37975143:37979023:37979139:37980257:37980333,	37979024	37979139	37979141	37979141	Splice_Site	T	C	.
ACC	TCGA-OR-A5J1-01	TMEM40	ENST00000476331.1,ENST00000435575.1,ENST00000485124.1,ENST00000435218.2,ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12779205:12779253:12779634:12779667:12780051:12780087,	12779635	12779667	12779634	12779634	Splice_Site	C	G	.
ACC	TCGA-OR-A5J4-01	AHI1	ENST00000265602.6,ENST00000417892.2,ENST00000475846.2,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2,ENST00000367799.2,ENST00000529865.1	chr6	135715913:135716034:135726088:135726115:135732485:135732646,	135726089	135726115	135726087	135726087	Splice_Site	A	C	.
ACC	TCGA-OR-A5J4-01	BRD1	ENST00000404760.1,ENST00000404034.1,ENST00000457780.2,ENST00000216267.8	chr22	50192635:50192767:50197851:50198008:50216598:50216853,	50197852	50198008	50198009	50198009	Splice_Site	C	A	.
ACC	TCGA-OR-A5LC-01	ASB10	ENST00000420175.2,ENST00000422024.1,ENST00000377867.3	chr7	150873198:150873384:150873649:150873763:150878025:150878545,	150873650	150873763	150873649	150873649	Splice_Site	C	A	.
ACC	TCGA-OR-A5LC-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42232822:42232898:42233641:42233713:42242489:42242616,	42233642	42233713	42233641	42233641	Splice_Site	G	T	.
ACC	TCGA-OR-A5JO-01	TEKT4	ENST00000468063.1,ENST00000295201.4	chr2	95539264:95539335:95539709:95539853:95540520:95540743,	95539710	95539853	95539855	95539855	Splice_Site	T	G	.
COAD	TCGA-CA-6717-01	AASDH	ENST00000205214.6,ENST00000514745.1,ENST00000434343.2,ENST00000602986.1,ENST00000513376.1,ENST00000503808.1	chr4	57204770:57204957:57209000:57209132:57209727:57209850,	57209001	57209132	57208999	57208999	Splice_Site	A	G	.
COAD	TCGA-A6-6141-01	ABCA12	ENST00000272895.7,ENST00000389661.4	chr2	215843039:215843190:215843527:215843764:215845206:215845367,	215843528	215843764	215843527	215843527	Splice_Site	C	T	.
COAD	TCGA-AM-5820-01	ABCC11	ENST00000356608.2,ENST00000565329.1,ENST00000394747.1,ENST00000394748.1	chr16	48201406:48201571:48204015:48204129:48204799:48204878,	48204016	48204129	48204130	48204130	Splice_Site	C	T	.
COAD	TCGA-F4-6570-01	ABCC11	ENST00000353782.5	chr16	48201406:48201571:48204799:48204878:48209168:48209328,	48204800	48204878	48204879	48204879	Splice_Site	C	A	.
COAD	TCGA-AZ-4315-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44041615:44041728:44047053:44047239:44049935:44050074,	44047054	44047239	44047053	44047053	Splice_Site	C	T	.
COAD	TCGA-AY-6197-01	ACAA1	ENST00000447223.1,ENST00000480865.1,ENST00000333167.8,ENST00000452171.1,ENST00000469559.1	chr3	38169276:38169357:38173086:38173129:38173416:38173437,38170819:38170879:38173086:38173129:38173416:38173437,	38173087	38173129	38173085	38173085	Splice_Site	A	G	.
COAD	TCGA-CA-6717-01	ACSS3	ENST00000548058.1	chr12	81470989:81472210:81503338:81503483:81528594:81528742,	81503339	81503483	81503338	81503338	Splice_Site	G	A	.
COAD	TCGA-CM-5860-01	ACTL6B	ENST00000487125.1,ENST00000160382.5	chr7	100240764:100240949:100243871:100243958:100244173:100244269,	100243872	100243958	100243871	100243871	Splice_Site	C	T	.
COAD	TCGA-AY-6197-01	ADAM7	ENST00000175238.6	chr8	24363606:24363669:24364992:24365048:24366058:24367061,24358989:24359089:24364992:24365048:24366058:24367061,	24364993	24365048	24365049	24365049	Splice_Site	G	A	.
COAD	TCGA-G4-6302-01	ADAMTS1	ENST00000284984.3	chr21	28212594:28212881:28213316:28213484:28214176:28214309,	28213317	28213484	28213485	28213485	Splice_Site	C	A	.
COAD	TCGA-AZ-6601-01	ADAMTSL2	ENST00000393061.3,ENST00000354484.4,ENST00000393060.1	chr9	136403470:136403546:136404892:136404995:136405719:136405860,	136404893	136404995	136404996	136404996	Splice_Site	G	A	.
COAD	TCGA-CA-6717-01	ADD3	ENST00000475954.1	chr10	111860382:111860606:111872534:111872673:111877099:111877117,	111872535	111872673	111872675	111872675	Splice_Site	T	C	.
COAD	TCGA-G4-6628-01	AFG3L2	ENST00000269143.3	chr18	12348271:12348382:12351083:12351209:12351304:12351412,	12351084	12351209	12351083	12351083	Splice_Site	C	T	.
COAD	TCGA-AA-3510-01	AHSG	ENST00000478441.1,ENST00000273784.5	chr3	186330873:186331143:186333473:186333584:186334231:186334316,	186333474	186333584	186333473	186333473	Splice_Site	G	A	.
COAD	TCGA-G4-6304-01	AK5	ENST00000344720.5,ENST00000478407.1,ENST00000354567.2	chr1	77752627:77752812:77759477:77759645:77763243:77763375,	77759478	77759645	77759477	77759477	Splice_Site	G	A	.
COAD	TCGA-G4-6295-01	AK7	ENST00000267584.4	chr14	96924419:96924549:96937814:96937943:96939023:96939092,	96937815	96937943	96937945	96937945	Splice_Site	T	A	.
COAD	TCGA-F4-6461-01	AMTN	ENST00000339336.4,ENST00000504451.1	chr4	71394439:71394475:71394900:71394927:71396755:71397017,	71394901	71394927	71394929	71394930	Splice_Site	-	A	.
COAD	TCGA-AD-6964-01	ANKAR	ENST00000438402.2,ENST00000433782.2	chr2	190593078:190593146:190593385:190593547:190602408:190602567,	190593386	190593547	190593549	190593549	Splice_Site	T	C	.
COAD	TCGA-F4-6461-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2,ENST00000433782.2	chr2	190602408:190602567:190603290:190603408:190606067:190606177,	190603291	190603408	190603410	190603410	Splice_Site	T	C	.
COAD	TCGA-AM-5821-01	ANKMY1	ENST00000401804.1,ENST00000361678.4,ENST00000373320.4,ENST00000391987.1,ENST00000406958.1,ENST00000405523.3	chr2	241494395:241494472:241496606:241496769:241500147:241500185,241494395:241494472:241496606:241496769:241497720:241498036,241494395:241494472:241496606:241496769:241497297:241497379,	241496607	241496769	241496770	241496770	Splice_Site	C	A	.
COAD	TCGA-D5-6927-01	ANKRD13A	ENST00000547639.1,ENST00000261739.4	chr12	110456943:110457133:110461850:110461917:110463546:110463628,	110461851	110461917	110461850	110461850	Splice_Site	G	T	.
COAD	TCGA-AZ-6598-01	ANKRD22	ENST00000371930.4	chr10	90582557:90582775:90583036:90583135:90585794:90585863,	90583037	90583135	90583137	90583137	Splice_Site	T	G	.
COAD	TCGA-CA-6717-01	ANKRD26	ENST00000376087.4	chr10	27349440:27349469:27350072:27350171:27352916:27353010,	27350073	27350171	27350071	27350071	Splice_Site	A	G	.
COAD	TCGA-CK-5916-01	ANKRD28	ENST00000399451.2,ENST00000451422.1,ENST00000498524.1,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15755033:15755148:15756084:15756163:15762421:15762629,	15756085	15756163	15756165	15756166	Splice_Site	-	G	.
COAD	TCGA-AD-5900-01	ANKRD53	ENST00000441349.1	chr2	71206328:71206473:71206790:71206990:71209706:71209825,	71206791	71206990	71206991	71206991	Splice_Site	G	A	.
COAD	TCGA-AZ-4315-01	ANO7	ENST00000274979.8	chr2	242162600:242162691:242163076:242163196:242163319:242163370,	242163077	242163196	242163197	242163197	Splice_Site	G	A	.
COAD	TCGA-AY-6196-01	ANXA4	ENST00000394295.4,ENST00000536030.1,ENST00000409920.1	chr2	70035037:70035128:70037725:70037805:70039784:70039841,	70037726	70037805	70037806	70037806	Splice_Site	G	A	.
COAD	TCGA-CK-5915-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112155042	112155042	Splice_Site	G	C	.
COAD	TCGA-AA-3713-01	APEH	ENST00000296456.5,ENST00000469362.2,ENST00000438011.1	chr3	49719154:49719238:49719319:49719400:49719780:49719869,	49719320	49719400	49719319	49719319	Splice_Site	G	-	.
COAD	TCGA-D5-6927-01	APOB	ENST00000233242.1	chr2	21246396:21246564:21247804:21247996:21249659:21249836,	21247805	21247996	21247803	21247803	Splice_Site	A	G	.
COAD	TCGA-AM-5820-01	APOC3	ENST00000227667.3,ENST00000470144.1	chr11	116700637:116700656:116701285:116701353:116701488:116701595,	116701286	116701353	116701354	116701354	Splice_Site	G	A	.
COAD	TCGA-AM-5820-01	APOC3	ENST00000375345.1	chr11	116700637:116700656:116701208:116701353:116701488:116701595,	116701209	116701353	116701354	116701354	Splice_Site	G	A	.
COAD	TCGA-G4-6586-01	APPL1	ENST00000482800.1,ENST00000288266.3	chr3	57286296:57286339:57287709:57287766:57290984:57291079,	57287710	57287766	57287768	57287768	Splice_Site	T	C	.
COAD	TCGA-F4-6570-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46231280:46231490:46233111:46233279:46240638:46240720,	46233112	46233279	46233111	46233111	Splice_Site	G	A	.
COAD	TCGA-F4-6856-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000466653.1,ENST00000264183.3,ENST00000418304.1,ENST00000491632.1	chr1	235392545:235392700:235394427:235394504:235397727:235397807,	235394428	235394504	235394506	235394507	Splice_Site	TA	-	.
COAD	TCGA-G4-6302-01	ARIH2	ENST00000356401.4,ENST00000449376.1,ENST00000452385.1	chr3	49016914:49017066:49017785:49017929:49019092:49019161,	49017786	49017929	49017930	49017930	Splice_Site	G	A	.
COAD	TCGA-CM-6170-01	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9474866:9474942:9475221:9475308:9484660:9484764,	9475222	9475308	9475310	9475310	Splice_Site	T	C	.
COAD	TCGA-AZ-4615-01	ATAD5	ENST00000321990.4	chr17	29206440:29206505:29214209:29214390:29219624:29219806,	29214210	29214390	29214208	29214208	Splice_Site	A	G	.
COAD	TCGA-D5-6927-01	ATCAY	ENST00000398448.3,ENST00000301260.6,ENST00000600960.1,ENST00000450849.2,ENST00000597739.1	chr19	3909483:3909615:3910800:3910887:3913755:3913854,	3910801	3910887	3910800	3910800	Splice_Site	G	T	.
COAD	TCGA-CK-5916-01	ATP2C1	ENST00000422190.2,ENST00000513801.1,ENST00000505330.1,ENST00000328560.8,ENST00000359644.3,ENST00000508297.1,ENST00000504948.1,ENST00000428331.2,ENST00000510168.1,ENST00000505072.1,ENST00000508532.1,ENST00000509662.1,ENST00000393221.4,ENST00000507488.2	chr3	130649259:130649370:130650865:130650982:130653465:130653525,	130650866	130650982	130650984	130650984	Splice_Site	T	C	.
COAD	TCGA-AZ-4315-01	ATP2C1	ENST00000422190.2,ENST00000513801.1,ENST00000533801.2,ENST00000505330.1,ENST00000328560.8,ENST00000359644.3,ENST00000504948.1,ENST00000428331.2,ENST00000510168.1,ENST00000508532.1,ENST00000504381.1,ENST00000393221.4,ENST00000504612.1,ENST00000507488.2	chr3	130653465:130653555:130656271:130656307:130659473:130659535,	130656272	130656307	130656309	130656309	Splice_Site	T	C	.
COAD	TCGA-D5-6928-01	ATRNL1	ENST00000355044.3	chr10	116925317:116925405:116930794:116931050:116975454:116975638,	116930795	116931050	116931051	116931051	Splice_Site	G	A	.
COAD	TCGA-CA-6718-01	AVEN	ENST00000306730.3,ENST00000558136.1	chr15	34159973:34160056:34163135:34163231:34168125:34168195,	34163136	34163231	34163232	34163232	Splice_Site	C	T	.
COAD	TCGA-CM-6162-01	AXIN1	ENST00000354866.3,ENST00000481769.1,ENST00000461023.1,ENST00000262320.3	chr16	354303:354441:359972:360069:364542:364683,	359973	360069	359972	359972	Splice_Site	C	T	.
COAD	TCGA-CM-4746-01	B3GAT3	ENST00000532585.1,ENST00000265471.5	chr11	62382922:62383271:62383977:62384268:62384458:62384819,	62383978	62384268	62383976	62383976	Splice_Site	A	G	.
COAD	TCGA-G4-6293-01	BAIAP2L1	ENST00000005260.8,ENST00000462558.1	chr7	97941411:97941576:97944771:97944924:97946530:97946668,	97944772	97944924	97944926	97944931	Splice_Site	TAAAAA	-	.
COAD	TCGA-D5-6534-01	BLM	ENST00000355112.3,ENST00000560136.1,ENST00000559724.1,ENST00000560509.1	chr15	91312362:91312461:91312667:91312816:91326051:91326158,	91312668	91312816	91312667	91312667	Splice_Site	G	A	.
COAD	TCGA-DM-A1DA-01	BMPR1B	ENST00000506363.1,ENST00000440890.2,ENST00000512312.1,ENST00000515059.1,ENST00000509540.1,ENST00000264568.4,ENST00000394931.1	chr4	96025558:96025718:96035870:96035973:96036835:96036938,	96035871	96035973	96035974	96035974	Splice_Site	G	T	.
COAD	TCGA-CM-6171-01	BPIFB6	ENST00000542375.1,ENST00000349552.1	chr20	31624250:31624342:31625367:31625544:31626714:31626768,	31625368	31625544	31625545	31625545	Splice_Site	G	A	.
COAD	TCGA-CM-6166-01	BRD7	ENST00000475877.1,ENST00000394689.2,ENST00000394688.3	chr16	50373886:50373997:50383933:50384078:50388335:50388390,	50383934	50384078	50383933	50383933	Splice_Site	C	T	.
COAD	TCGA-AD-5900-01	BST1	ENST00000265016.4,ENST00000514989.1,ENST00000505785.1,ENST00000514445.1,ENST00000382346.3	chr4	15716950:15716984:15717329:15717422:15720529:15720616,	15717330	15717422	15717329	15717330	Splice_Site	-	T	.
COAD	TCGA-F4-6856-01	C19orf54	ENST00000469741.2,ENST00000378313.2	chr19	41249819:41249880:41249971:41250101:41250463:41250588,	41249972	41250101	41249971	41249971	Splice_Site	C	T	.
COAD	TCGA-A6-6653-01	C1orf112	ENST00000496973.1,ENST00000498289.1,ENST00000472795.1,ENST00000359326.4,ENST00000286031.6,ENST00000456684.1	chr1	169768059:169768099:169770023:169770112:169771761:169771866,	169770024	169770112	169770113	169770113	Splice_Site	G	A	.
COAD	TCGA-A6-6653-01	CACNA1C	ENST00000399649.1	chr12	2721068:2721179:2743462:2743540:2760805:2760913,	2743463	2743540	2743462	2743462	Splice_Site	G	A	.
COAD	TCGA-A6-6653-01	CACNA1C	ENST00000399629.1	chr12	2721068:2721179:2743462:2743546:2757640:2757673,2721068:2721179:2743462:2743546:2760805:2760913,2742794:2742878:2743462:2743546:2757640:2757673,2742794:2742878:2743462:2743546:2760805:2760913,	2743463	2743546	2743462	2743462	Splice_Site	G	A	.
COAD	TCGA-AA-3713-01	CAMK2G	ENST00000305762.7,ENST00000351293.3,ENST00000423381.1,ENST00000322680.3,ENST00000372765.1,ENST00000433289.1,ENST00000394762.2,ENST00000322635.3	chr10	75612011:75612077:75612949:75613004:75620587:75620612,	75612950	75613004	75613005	75613005	Splice_Site	C	T	.
COAD	TCGA-A6-5665-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934868	223934868	Splice_Site	G	A	.
COAD	TCGA-AY-6197-01	CATSPERD	ENST00000309164.7,ENST00000381624.3	chr19	5768178:5768253:5770954:5771083:5772798:5772976,	5770955	5771083	5770954	5770954	Splice_Site	G	T	.
COAD	TCGA-AA-3713-01	CC2D1A	ENST00000588932.1,ENST00000589138.1,ENST00000589606.1,ENST00000586955.1,ENST00000318003.7	chr19	14031562:14031735:14034145:14034268:14034360:14034419,	14034146	14034268	14034145	14034145	Splice_Site	G	T	.
COAD	TCGA-AD-5900-01	CCDC134	ENST00000255784.5	chr22	42205882:42206004:42206210:42206295:42209267:42209449,	42206211	42206295	42206210	42206210	Splice_Site	G	T	.
COAD	TCGA-CA-6718-01	CCDC58	ENST00000291458.5,ENST00000479899.1,ENST00000479414.1	chr3	122081814:122081874:122087022:122087169:122090521:122090577,	122087023	122087169	122087021	122087021	Splice_Site	A	C	.
COAD	TCGA-D5-6534-01	CCDC62	ENST00000392441.4,ENST00000341952.4,ENST00000253079.6	chr12	123262037:123262230:123265710:123265877:123270265:123270367,	123265711	123265877	123265710	123265710	Splice_Site	G	C	.
COAD	TCGA-F4-6855-01	CD99L2	ENST00000466436.1	chrX	149984479:149984551:149999703:149999766:150066994:150067082,149963890:149963959:149999703:149999766:150066994:150067082,	149999704	149999766	149999703	149999703	Splice_Site	C	T	.
COAD	TCGA-AZ-6599-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366767.3,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227348243:227348337:227381486:227381635:227387257:227387353,	227381487	227381635	227381486	227381486	Splice_Site	C	-	.
COAD	TCGA-AZ-4615-01	CDH19	ENST00000262150.2	chr18	64176231:64176483:64178804:64178922:64197081:64197203,	64178805	64178922	64178924	64178925	Splice_Site	-	A	.
COAD	TCGA-D5-6540-01	CEP112	ENST00000535342.2,ENST00000583358.1,ENST00000392769.2	chr17	64066032:64066119:64125863:64125941:64128787:64128881,64092702:64092750:64125863:64125941:64128787:64128881,	64125864	64125941	64125862	64125862	Splice_Site	A	T	.
COAD	TCGA-D5-6540-01	CEP112	ENST00000535342.2,ENST00000583358.1,ENST00000392769.2	chr17	64066032:64066119:64125863:64125941:64128787:64128881,64092702:64092750:64125863:64125941:64128787:64128881,	64125864	64125941	64125863	64125863	Splice_Site	C	T	.
COAD	TCGA-A6-5661-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34086423:34086545:34087877:34087998:34089671:34089793,	34087878	34087998	34087877	34087877	Splice_Site	G	T	.
COAD	TCGA-AA-3510-01	CES1	ENST00000422046.2,ENST00000360526.3,ENST00000565403.1,ENST00000361503.4,ENST00000563005.1	chr16	55854283:55854391:55855279:55855433:55857461:55857595,	55855280	55855433	55855434	55855434	Splice_Site	C	T	.
COAD	TCGA-D5-5537-01	CHD1L	ENST00000361293.5,ENST00000369258.4,ENST00000369259.3,ENST00000431239.1,ENST00000467213.1	chr1	146747767:146747921:146751698:146751864:146756023:146756172,	146751699	146751864	146751866	146751866	Splice_Site	T	G	.
COAD	TCGA-G4-6588-01	CHORDC1	ENST00000320585.6,ENST00000525317.1,ENST00000529402.1,ENST00000533772.1,ENST00000530765.1,ENST00000533724.1	chr11	89947185:89947343:89948341:89948398:89951302:89951352,	89948342	89948398	89948399	89948399	Splice_Site	C	A	.
COAD	TCGA-AD-6895-01	CIB2	ENST00000559054.1	chr15	78401678:78401724:78403506:78403618:78416046:78416081,78401678:78401724:78403506:78403618:78423506:78423567,78401629:78401724:78403506:78403618:78412909:78413003,	78403507	78403618	78403505	78403505	Splice_Site	A	G	.
COAD	TCGA-CK-5913-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795709	42795709	Splice_Site	G	A	.
COAD	TCGA-A6-6781-01	CLCN6	ENST00000376497.3,ENST00000376490.3,ENST00000346436.6,ENST00000376491.3,ENST00000376492.3,ENST00000376496.3,ENST00000312413.6	chr1	11867187:11867247:11875902:11875968:11876671:11876737,	11875903	11875968	11875969	11875969	Splice_Site	G	T	.
COAD	TCGA-AA-3663-01	CLCNKA	ENST00000464764.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4	chr1	16353030:16353108:16353191:16353270:16353804:16353930,	16353192	16353270	16353271	16353271	Splice_Site	G	A	.
COAD	TCGA-D5-6928-01	CLEC16A	ENST00000409552.3,ENST00000465491.1,ENST00000409790.1	chr16	11145369:11145498:11154758:11154879:11214471:11214623,	11154759	11154879	11154758	11154758	Splice_Site	G	T	.
COAD	TCGA-CM-6166-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000461981.1,ENST00000473565.1,ENST00000409403.2	chr2	201722440:201722607:201722695:201722812:201724402:201724469,	201722696	201722812	201722695	201722695	Splice_Site	C	G	.
COAD	TCGA-AA-3713-01	CNOT8	ENST00000520671.1,ENST00000519903.1,ENST00000403027.2,ENST00000517876.1,ENST00000285896.6	chr5	154247251:154247352:154250220:154250382:154251289:154251341,154238211:154238328:154250220:154250382:154251289:154251341,154242771:154242955:154250220:154250382:154251289:154251341,154244751:154244945:154250220:154250382:154251289:154251341,	154250221	154250382	154250219	154250219	Splice_Site	A	T	.
COAD	TCGA-DM-A0XD-01	COG5	ENST00000393603.2,ENST00000297135.3	chr7	106877099:106877132:106888840:106888944:106897176:106897239,	106888841	106888944	106888946	106888947	Splice_Site	-	A	.
COAD	TCGA-AZ-6598-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924329	46924329	Splice_Site	G	-	.
COAD	TCGA-G4-6628-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924329	46924329	Splice_Site	G	-	.
COAD	TCGA-AA-3697-01	COL22A1	ENST00000435777.1,ENST00000303045.6	chr8	139815114:139815177:139820010:139820055:139824041:139824164,	139820011	139820055	139820056	139820056	Splice_Site	C	G	.
COAD	TCGA-A6-5661-01	COL6A1	ENST00000361866.3	chr21	47410171:47410198:47410291:47410336:47410686:47410740,	47410292	47410336	47410291	47410291	Splice_Site	G	T	.
COAD	TCGA-CM-5861-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238249094:238249793:238250707:238250804:238252992:238253486,	238250708	238250804	238250706	238250706	Splice_Site	A	G	.
COAD	TCGA-AD-6901-01	COPS2	ENST00000299259.6,ENST00000388901.5,ENST00000542928.1	chr15	49422915:49423013:49425955:49426008:49426126:49426305,	49425956	49426008	49426009	49426009	Splice_Site	C	G	.
COAD	TCGA-F4-6856-01	CPEB2	ENST00000507071.1,ENST00000509684.1,ENST00000382401.3,ENST00000259997.5,ENST00000345451.3,ENST00000538197.1,ENST00000541112.1,ENST00000442003.2,ENST00000382395.3	chr4	15060044:15060163:15060810:15060925:15063702:15063884,	15060811	15060925	15060810	15060810	Splice_Site	G	T	.
COAD	TCGA-A6-5665-01	CREB3L2	ENST00000456390.1,ENST00000330387.6	chr7	137586099:137586168:137588704:137588763:137590447:137590594,	137588705	137588763	137588765	137588766	Splice_Site	-	GA	.
COAD	TCGA-AZ-6605-01	CRMP1	ENST00000512574.1,ENST00000324989.7,ENST00000511535.1,ENST00000397890.2	chr4	5822969:5823578:5827220:5827386:5830215:5830395,	5827221	5827386	5827220	5827220	Splice_Site	C	T	.
COAD	TCGA-F4-6570-01	CTPS2	ENST00000380241.3,ENST00000443824.1,ENST00000359276.4	chrX	16627663:16627808:16635272:16635369:16638399:16638455,	16635273	16635369	16635370	16635370	Splice_Site	C	T	.
COAD	TCGA-AD-5900-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43014617:43014845:43015885:43015991:43016069:43016307,	43015886	43015991	43015993	43015993	Splice_Site	T	C	.
COAD	TCGA-G4-6297-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101754977:101755054:101758486:101758553:101801839:101801888,	101758487	101758553	101758485	101758485	Splice_Site	A	C	.
COAD	TCGA-G4-6302-01	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	49032841:49032977:49034582:49034732:49040052:49040197,	49034583	49034732	49034734	49034734	Splice_Site	T	C	.
COAD	TCGA-G4-6295-01	CXCL16	ENST00000293778.6,ENST00000575168.1,ENST00000574412.1	chr17	4637883:4637947:4638386:4638803:4641702:4641785,	4638387	4638803	4638805	4638805	Splice_Site	T	C	.
COAD	TCGA-AA-3492-01	DAGLA	ENST00000257215.5	chr11	61487583:61487722:61488150:61488362:61490330:61490432,	61488151	61488362	61488150	61488150	Splice_Site	G	T	.
COAD	TCGA-AA-3492-01	DAGLA	ENST00000540717.1	chr11	61487583:61487722:61488150:61488339:61490330:61490432,	61488151	61488339	61488150	61488150	Splice_Site	G	T	.
COAD	TCGA-CA-6717-01	DCAF12	ENST00000361264.4	chr9	34096713:34096779:34098321:34098515:34106431:34106492,	34098322	34098515	34098321	34098321	Splice_Site	C	T	.
COAD	TCGA-AA-3697-01	DCBLD1	ENST00000296955.8,ENST00000338728.5,ENST00000533453.1,ENST00000368503.4	chr6	117824946:117825142:117840978:117841113:117842687:117842739,	117840979	117841113	117840978	117840978	Splice_Site	G	A	.
COAD	TCGA-F4-6805-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000469648.1	chr3	98541512:98541585:98544158:98544210:98568304:98568442,	98544159	98544210	98544211	98544211	Splice_Site	C	A	.
COAD	TCGA-AZ-6598-01	DCLRE1C	ENST00000378254.1,ENST00000378255.1,ENST00000378289.4,ENST00000378278.2,ENST00000453695.2,ENST00000378241.1,ENST00000396817.2,ENST00000378258.1	chr10	14976721:14976774:14977461:14977563:14978536:14978592,	14977462	14977563	14977461	14977461	Splice_Site	C	T	.
COAD	TCGA-AZ-6598-01	DCLRE1C	ENST00000418843.1	chr10	14976721:14976774:14977461:14977522:14978536:14978592,	14977462	14977522	14977461	14977461	Splice_Site	C	T	.
COAD	TCGA-D5-5540-01	DCLRE1C	ENST00000378254.1,ENST00000378255.1,ENST00000378289.4,ENST00000378278.2,ENST00000453695.2,ENST00000378241.1,ENST00000396817.2,ENST00000378258.1	chr10	14977461:14977563:14978536:14978592:14981808:14981868,	14978537	14978592	14978593	14978593	Splice_Site	C	A	.
COAD	TCGA-AZ-4315-01	DCP2	ENST00000513585.1,ENST00000389063.2,ENST00000543319.1	chr5	112339638:112339774:112343634:112343739:112346452:112346504,	112343635	112343739	112343634	112343634	Splice_Site	G	T	.
COAD	TCGA-CA-6717-01	DDX60	ENST00000393743.3	chr4	169169338:169169443:169172104:169172257:169173659:169173807,	169172105	169172257	169172258	169172258	Splice_Site	C	A	.
COAD	TCGA-A6-5661-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629613	118629614	Splice_Site	-	G	.
COAD	TCGA-AY-6197-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629613	118629614	Splice_Site	-	G	.
COAD	TCGA-CK-5916-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629613	118629614	Splice_Site	-	G	.
COAD	TCGA-DM-A1D7-01	DENND1B	ENST00000235453.4,ENST00000294737.7,ENST00000400967.2,ENST00000294738.5,ENST00000367396.3	chr1	197641166:197641286:197643249:197643299:197684160:197684204,	197643250	197643299	197643249	197643249	Splice_Site	C	T	.
COAD	TCGA-AY-6197-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000526707.1,ENST00000524446.1	chr11	9167259:9167362:9168576:9168698:9171627:9171720,	9168577	9168698	9168575	9168575	Splice_Site	A	G	.
COAD	TCGA-AZ-6598-01	DGKA	ENST00000551585.1,ENST00000551296.1,ENST00000549079.2,ENST00000402956.3,ENST00000331886.5,ENST00000555218.1,ENST00000552903.2,ENST00000394147.1,ENST00000551156.1	chr12	56345406:56345567:56345818:56345883:56346124:56346194,	56345819	56345883	56345818	56345818	Splice_Site	G	T	.
COAD	TCGA-AA-3712-01	DIS3L	ENST00000524795.1,ENST00000525109.1,ENST00000530537.1,ENST00000441424.2,ENST00000565281.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66601046:66601182:66604061:66604238:66606376:66606455,	66604062	66604238	66604061	66604061	Splice_Site	G	C	.
COAD	TCGA-AZ-4315-01	DLG1	ENST00000448528.2,ENST00000419354.1,ENST00000392381.3,ENST00000346964.2	chr3	196869588:196869639:196876613:196876667:196921295:196921460,196869588:196869639:196876613:196876667:196910445:196910505,196869588:196869639:196876613:196876667:196888510:196888609,	196876614	196876667	196876613	196876613	Splice_Site	C	T	.
COAD	TCGA-CA-6717-01	DLG2	ENST00000398309.2,ENST00000543673.1,ENST00000420775.2,ENST00000280241.8,ENST00000376104.2,ENST00000531015.1	chr11	83183769:83183820:83195171:83195271:83243750:83243826,	83195172	83195271	83195171	83195171	Splice_Site	C	T	.
COAD	TCGA-D5-6534-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32364059:32364197:32366522:32366645:32380904:32381075,	32366523	32366645	32366647	32366648	Splice_Site	-	A	.
COAD	TCGA-CA-6718-01	DMKN	ENST00000440396.1,ENST00000462538.1,ENST00000434389.1	chr19	35997027:35997087:35998359:35998413:35999106:35999134,35996840:35996888:35998359:35998413:35999106:35999134,	35998360	35998413	35998414	35998414	Splice_Site	C	A	.
COAD	TCGA-A6-6141-01	DNAAF1	ENST00000567918.1,ENST00000563093.1,ENST00000378553.5,ENST00000570298.1	chr16	84178921:84179169:84182611:84182747:84183855:84183947,	84182612	84182747	84182611	84182611	Splice_Site	G	A	.
COAD	TCGA-A6-5661-01	DNAJC15	ENST00000379221.2	chr13	43652747:43652824:43659903:43659974:43681313:43683045,	43659904	43659974	43659903	43659903	Splice_Site	G	A	.
COAD	TCGA-AA-3510-01	DNASE1L3	ENST00000394549.2,ENST00000483681.1,ENST00000461914.3,ENST00000318316.3	chr3	58190495:58190608:58191197:58191287:58193944:58194033,	58191198	58191287	58191288	58191288	Splice_Site	C	A	.
COAD	TCGA-AZ-4315-01	DOCK2	ENST00000256935.8,ENST00000524185.1	chr5	169138938:169139011:169139123:169139227:169141031:169141187,	169139124	169139227	169139122	169139122	Splice_Site	A	C	.
COAD	TCGA-AY-6197-01	DOCK2	ENST00000520836.1,ENST00000256935.8,ENST00000520181.1,ENST00000520908.1,ENST00000519628.1,ENST00000540750.1,ENST00000524185.1	chr5	169186720:169186779:169188522:169188629:169230061:169230210,	169188523	169188629	169188631	169188631	Splice_Site	T	C	.
COAD	TCGA-AA-3510-01	DPPA4	ENST00000335658.6	chr3	109046371:109046871:109047736:109047935:109049370:109049659,	109047737	109047935	109047735	109047735	Splice_Site	A	G	.
COAD	TCGA-AA-3510-01	DPPA4	ENST00000463966.1	chr3	109046371:109046871:109047736:109047928:109050580:109050631,	109047737	109047928	109047735	109047735	Splice_Site	A	G	.
COAD	TCGA-A6-6781-01	DPY19L3	ENST00000585597.1,ENST00000342179.5,ENST00000586987.1,ENST00000392250.2,ENST00000588648.3	chr19	32944050:32944182:32945844:32945946:32949005:32949079,	32945845	32945946	32945844	32945845	Splice_Site	-	A	.
COAD	TCGA-F4-6855-01	DTWD2	ENST00000510708.1,ENST00000304058.4	chr5	118183784:118183913:118264231:118264424:118274890:118274985,	118264232	118264424	118264231	118264231	Splice_Site	C	A	.
COAD	TCGA-CM-5861-01	ECT2	ENST00000441497.2,ENST00000428567.1,ENST00000540509.1,ENST00000392692.3,ENST00000417960.1,ENST00000232458.5,ENST00000427830.1	chr3	172476769:172476859:172477945:172478053:172479399:172479424,	172477946	172478053	172478055	172478055	Splice_Site	T	C	.
COAD	TCGA-AZ-6598-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268825	21268826	Splice_Site	-	G	.
COAD	TCGA-AZ-6598-01	EIF5B	ENST00000289371.6	chr2	99985854:99985944:99988118:99988193:99992809:99993099,	99988119	99988193	99988117	99988119	Splice_Site	AGA	-	.
COAD	TCGA-CK-5916-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33726212:33726344:33734812:33734962:33736428:33736617,	33734813	33734962	33734811	33734812	Splice_Site	AG	-	.
COAD	TCGA-AD-6895-01	EME1	ENST00000511711.1	chr17	48452545:48452873:48453157:48453344:48453426:48453554,	48453158	48453344	48453345	48453345	Splice_Site	G	A	.
COAD	TCGA-F4-6570-01	EMID1	ENST00000404820.3,ENST00000484039.1,ENST00000334018.6,ENST00000404755.3,ENST00000435427.1	chr22	29627008:29627129:29627581:29627671:29628244:29628334,	29627582	29627671	29627580	29627580	Splice_Site	A	G	.
COAD	TCGA-CK-5916-01	ENOX2	ENST00000370935.1,ENST00000492263.1,ENST00000394363.1,ENST00000338144.3,ENST00000370927.1,ENST00000432489.1	chrX	129813619:129813722:129822836:129822992:129837093:129837228,	129822837	129822992	129822994	129822995	Splice_Site	-	A	.
COAD	TCGA-AZ-6598-01	EPB41L4A	ENST00000261486.5,ENST00000511405.1	chr5	111576415:111576507:111594925:111594989:111595587:111595676,	111594926	111594989	111594991	111594992	Splice_Site	-	A	.
COAD	TCGA-AD-6964-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000466241.1,ENST00000443124.1,ENST00000263713.5	chr2	120776723:120776840:120799581:120799686:120830753:120830796,	120799582	120799686	120799581	120799582	Splice_Site	-	A	.
COAD	TCGA-AD-6895-01	EPHB6	ENST00000411471.2,ENST00000422643.1,ENST00000425995.1,ENST00000466783.1,ENST00000486511.1,ENST00000442129.1,ENST00000392957.2	chr7	142568056:142568160:142568282:142568438:142568548:142568840,	142568283	142568438	142568282	142568282	Splice_Site	G	T	.
COAD	TCGA-AA-3492-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686535	95686535	Splice_Site	G	A	.
COAD	TCGA-AA-3492-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686535	95686535	Splice_Site	G	A	.
COAD	TCGA-AZ-4616-01	ETV5	ENST00000537818.1,ENST00000306376.5,ENST00000434744.1,ENST00000480706.1	chr3	185766603:185766649:185769818:185769920:185774863:185775033,	185769819	185769920	185769818	185769818	Splice_Site	C	G	.
COAD	TCGA-CA-6717-01	EXOC6B	ENST00000410104.1	chr2	72960199:72960247:72968432:72968598:73052926:73053134,	72968433	72968598	72968432	72968432	Splice_Site	C	T	.
COAD	TCGA-AD-6964-01	EXOSC1	ENST00000370884.5,ENST00000485122.2,ENST00000370886.5,ENST00000476234.1	chr10	99200927:99201016:99205488:99205604:99205711:99205730,99202993:99203068:99205488:99205604:99205711:99205730,	99205489	99205604	99205605	99205605	Splice_Site	C	A	.
COAD	TCGA-AZ-6598-01	FAM160A2	ENST00000265978.4,ENST00000524416.1,ENST00000449352.2	chr11	6239829:6239993:6240200:6240280:6243671:6243839,	6240201	6240280	6240282	6240283	Splice_Site	-	G	.
COAD	TCGA-CA-6717-01	FAM19A3	ENST00000369630.3	chr1	113265637:113265787:113266566:113266759:113269250:113269857,	113266567	113266759	113266566	113266566	Splice_Site	G	A	.
COAD	TCGA-AZ-4615-01	FARS2	ENST00000274680.4,ENST00000324331.6	chr6	5368782:5369415:5404774:5404934:5431273:5431405,	5404775	5404934	5404936	5404936	Splice_Site	T	C	.
COAD	TCGA-A6-6653-01	FBXW4	ENST00000470093.1,ENST00000331272.7	chr10	103370422:103371167:103371384:103371526:103372093:103372234,	103371385	103371526	103371383	103371383	Splice_Site	A	G	.
COAD	TCGA-CM-4746-01	FLT3LG	ENST00000600429.1,ENST00000597551.1,ENST00000204637.2,ENST00000600084.1,ENST00000594009.1,ENST00000595510.1	chr19	49979679:49979823:49982165:49982304:49983554:49983733,	49982166	49982304	49982165	49982166	Splice_Site	-	CC	.
COAD	TCGA-CA-6717-01	FMNL1	ENST00000328118.3,ENST00000331495.3	chr17	43299291:43299620:43307970:43308054:43309733:43309817,	43307971	43308054	43307970	43307970	Splice_Site	G	T	.
COAD	TCGA-CA-6717-01	FOXK2	ENST00000473637.2,ENST00000526383.2,ENST00000335255.5	chr17	80529599:80529746:80540616:80540810:80541888:80541906,	80540617	80540810	80540616	80540616	Splice_Site	G	T	.
COAD	TCGA-F4-6856-01	FOXP2	ENST00000393489.3,ENST00000412402.1,ENST00000403559.4,ENST00000350908.4,ENST00000393491.3,ENST00000393494.2,ENST00000393498.2,ENST00000408937.3	chr7	114303504:114303574:114304327:114304491:114329836:114329981,	114304328	114304491	114304493	114304493	Splice_Site	T	C	.
COAD	TCGA-AY-6197-01	FRS2	ENST00000299293.2,ENST00000549921.1,ENST00000397997.2,ENST00000550389.1	chr12	69965055:69965214:69965897:69966061:69967784:69968744,	69965898	69966061	69965897	69965897	Splice_Site	G	A	.
COAD	TCGA-AZ-4315-01	FRY	ENST00000380250.3	chr13	32813388:32813486:32813847:32814018:32818178:32818319,	32813848	32814018	32814019	32814019	Splice_Site	G	A	.
COAD	TCGA-F4-6856-01	FUBP3	ENST00000319725.9	chr9	133501750:133501892:133506014:133506175:133506943:133507017,	133506015	133506175	133506176	133506176	Splice_Site	G	A	.
COAD	TCGA-DM-A0XD-01	GABPA	ENST00000400075.3,ENST00000354828.3	chr21	27130320:27130515:27134622:27134676:27136520:27136661,	27134623	27134676	27134677	27134677	Splice_Site	G	A	.
COAD	TCGA-DM-A1D7-01	GAS2L3	ENST00000547754.1,ENST00000539410.1,ENST00000266754.5,ENST00000537247.1	chr12	101012226:101012365:101016052:101016160:101017339:101018668,	101016053	101016160	101016162	101016162	Splice_Site	T	G	.
COAD	TCGA-G4-6588-01	GCA	ENST00000414723.1,ENST00000437150.2,ENST00000233612.4	chr2	163213267:163213415:163215553:163215667:163216003:163216062,	163215554	163215667	163215668	163215668	Splice_Site	G	A	.
COAD	TCGA-D5-5537-01	GEMIN5	ENST00000285873.7	chr5	154311017:154311137:154311658:154311810:154315400:154315582,	154311659	154311810	154311812	154311813	Splice_Site	-	A	.
COAD	TCGA-AZ-4315-01	GLDC	ENST00000321612.6	chr9	6536063:6536236:6540050:6540146:6550802:6550914,	6540051	6540146	6540147	6540147	Splice_Site	C	A	.
COAD	TCGA-AU-6004-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000562090.1,ENST00000447066.2	chr16	74511293:74511431:74514138:74514292:74516920:74517022,	74514139	74514292	74514293	74514293	Splice_Site	C	A	.
COAD	TCGA-F4-6703-01	GLS	ENST00000409428.1,ENST00000320717.3	chr2	191819309:191819386:191819480:191819544:191827555:191827714,	191819481	191819544	191819546	191819546	Splice_Site	T	G	.
COAD	TCGA-CM-6171-01	GMIP	ENST00000587713.1	chr19	19745903:19746022:19746223:19746530:19747515:19747596,	19746224	19746530	19746532	19746532	Splice_Site	T	C	.
COAD	TCGA-CM-6171-01	GMIP	ENST00000593186.1,ENST00000203556.4	chr19	19746223:19746378:19746452:19746530:19747515:19747596,	19746453	19746530	19746532	19746532	Splice_Site	T	C	.
COAD	TCGA-AM-5820-01	GNLY	ENST00000489214.1,ENST00000409696.3,ENST00000533041.1	chr2	85921548:85921593:85921875:85922119:85922442:85922546,	85921876	85922119	85922121	85922122	Splice_Site	-	A	.
COAD	TCGA-AM-5820-01	GNLY	ENST00000524600.1	chr2	85921548:85921593:85922038:85922119:85922442:85922546,	85922039	85922119	85922121	85922122	Splice_Site	-	A	.
COAD	TCGA-CA-6717-01	GPR107	ENST00000372406.1,ENST00000372410.3,ENST00000493417.1,ENST00000347136.6	chr9	132854526:132854660:132861735:132861811:132862907:132862981,	132861736	132861811	132861735	132861735	Splice_Site	G	T	.
COAD	TCGA-AM-5821-01	GSDMB	ENST00000520542.1	chr17	38063213:38063240:38064428:38064467:38065210:38065295,38062447:38062524:38064428:38064467:38065210:38065295,	38064429	38064467	38064469	38064469	Splice_Site	T	C	.
COAD	TCGA-CA-6717-01	GSDMC	ENST00000522273.1,ENST00000276708.4	chr8	130762676:130762816:130763787:130763814:130764107:130764137,	130763788	130763814	130763815	130763815	Splice_Site	C	A	.
COAD	TCGA-AA-3712-01	GYS1	ENST00000323798.3,ENST00000541188.1,ENST00000484289.2,ENST00000263276.6	chr19	49485511:49485632:49485976:49486094:49488717:49488731,	49485977	49486094	49486095	49486095	Splice_Site	C	G	.
COAD	TCGA-AA-3510-01	HABP2	ENST00000542051.1,ENST00000541666.1,ENST00000351270.3	chr10	115327247:115327284:115334047:115334164:115335655:115335763,	115334048	115334164	115334047	115334047	Splice_Site	G	A	.
COAD	TCGA-D5-5538-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65474876:65474983:65475946:65476172:65478681:65478821,	65475947	65476172	65476174	65476174	Splice_Site	T	C	.
COAD	TCGA-AD-6889-01	HERC3	ENST00000264345.3,ENST00000543130.1,ENST00000402738.1	chr4	89591010:89591174:89591289:89591403:89597368:89597392,	89591290	89591403	89591405	89591405	Splice_Site	T	C	.
COAD	TCGA-AZ-6607-01	HFM1	ENST00000370425.3,ENST00000370424.3,ENST00000462405.1,ENST00000294696.5	chr1	91781947:91782033:91784634:91784766:91784849:91784947,	91784635	91784766	91784768	91784769	Splice_Site	-	A	.
COAD	TCGA-AZ-4615-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910533	29910533	Splice_Site	G	T	.
COAD	TCGA-AZ-4615-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4	chr7	26237333:26237352:26237450:26237486:26240191:26240366,	26237451	26237486	26237488	26237489	Splice_Site	-	G	.
COAD	TCGA-A6-5665-01	HPN	ENST00000593305.1,ENST00000599363.1,ENST00000597419.1,ENST00000262626.2,ENST00000392226.1,ENST00000541345.2	chr19	35556180:35556249:35556442:35556585:35556771:35556936,	35556443	35556585	35556442	35556442	Splice_Site	G	T	.
COAD	TCGA-A6-6781-01	HTRA1	ENST00000420892.1,ENST00000368984.3	chr10	124269611:124269669:124271485:124271581:124273706:124274423,	124271486	124271581	124271582	124271582	Splice_Site	G	A	.
COAD	TCGA-AD-6964-01	IFI6	ENST00000362020.4	chr1	27994869:27994886:27994968:27995046:27995755:27995857,27994736:27994886:27994968:27995046:27995743:27995857,	27994969	27995046	27995047	27995047	Splice_Site	C	A	.
COAD	TCGA-D5-6928-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1,ENST00000382778.4	chr13	21179194:21179244:21189931:21190018:21199888:21199988,	21189932	21190018	21190019	21190019	Splice_Site	G	A	.
COAD	TCGA-DM-A0X9-01	IKZF1	ENST00000357364.4,ENST00000439701.1,ENST00000359197.5,ENST00000440768.2,ENST00000471793.1,ENST00000331340.3	chr7	50367244:50367353:50444230:50444491:50450237:50450405,	50444231	50444491	50444492	50444492	Splice_Site	G	T	.
COAD	TCGA-CM-6162-01	IL3RA	ENST00000381469.2,ENST00000331035.4	chrX	1497551:1497657:1499915:1499997:1501283:1501358,	1499916	1499997	1499999	1499999	Splice_Site	T	C	.
COAD	TCGA-AD-6895-01	IMPACT	ENST00000578221.1	chr18	22006705:22006756:22007882:22008011:22008832:22008885,	22007883	22008011	22007881	22007881	Splice_Site	A	T	.
COAD	TCGA-AA-3663-01	IRF1	ENST00000405885.2,ENST00000245414.4	chr5	131818777:131819767:131820053:131820189:131821358:131821408,	131820054	131820189	131820190	131820190	Splice_Site	C	A	.
COAD	TCGA-AA-3713-01	IRF1	ENST00000405885.2,ENST00000245414.4	chr5	131818777:131819767:131820053:131820189:131821358:131821408,	131820054	131820189	131820191	131820191	Splice_Site	T	C	.
COAD	TCGA-CM-6676-01	ISYNA1	ENST00000582811.2,ENST00000577916.2,ENST00000338128.8,ENST00000317018.6,ENST00000457269.4,ENST00000577820.1,ENST00000582770.2,ENST00000545187.1,ENST00000583816.2,ENST00000578963.1	chr19	18546566:18546731:18546841:18547057:18547139:18547289,	18546842	18547057	18546841	18546841	Splice_Site	C	T	.
COAD	TCGA-AZ-6598-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145537422:145537564:145537736:145537829:145537988:145538065,	145537737	145537829	145537735	145537736	Splice_Site	AG	-	.
COAD	TCGA-AY-6197-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000430709.1,ENST00000261023.3	chr2	187534427:187534541:187540330:187540444:187540546:187540654,	187540331	187540444	187540445	187540445	Splice_Site	G	A	.
COAD	TCGA-F4-6463-01	KANSL1	ENST00000577114.1,ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1	chr17	44159806:44159908:44171925:44172067:44248220:44248306,	44171926	44172067	44172068	44172068	Splice_Site	C	T	.
COAD	TCGA-F4-6703-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137728859:137729061:137733866:137734081:137735548:137735588,	137733867	137734081	137734082	137734082	Splice_Site	G	A	.
COAD	TCGA-A6-6781-01	KDM8	ENST00000441782.2,ENST00000286096.4	chr16	27227265:27227310:27230281:27230431:27231886:27231988,27227265:27227310:27230281:27230431:27231713:27231806,	27230282	27230431	27230281	27230281	Splice_Site	G	T	.
COAD	TCGA-A6-6781-01	KDM8	ENST00000567735.1	chr16	27227265:27227310:27230281:27230367:27231713:27231806,27227265:27227310:27230281:27230367:27231886:27231988,	27230282	27230367	27230281	27230281	Splice_Site	G	T	.
COAD	TCGA-AD-6895-01	KHNYN	ENST00000556842.1,ENST00000251343.5,ENST00000553935.1	chr14	24901999:24902058:24902141:24902238:24905277:24905385,	24902142	24902238	24902239	24902239	Splice_Site	G	A	.
COAD	TCGA-AD-6895-01	KHSRP	ENST00000599395.1,ENST00000595548.1,ENST00000398148.3,ENST00000595258.1	chr19	6421288:6421328:6421660:6421699:6422350:6422368,	6421661	6421699	6421659	6421660	Splice_Site	AC	-	.
COAD	TCGA-AD-6889-01	KIAA0319	ENST00000543707.1,ENST00000378214.3,ENST00000430948.2,ENST00000537886.1,ENST00000535378.1	chr6	24578337:24578470:24580085:24580178:24581153:24581241,	24580086	24580178	24580179	24580179	Splice_Site	C	T	.
COAD	TCGA-CM-6171-01	KIAA1324	ENST00000369939.3,ENST00000527996.1,ENST00000369938.1,ENST00000369936.1,ENST00000529753.1,ENST00000490758.2,ENST00000457623.2	chr1	109730798:109730976:109731687:109731816:109732213:109732304,	109731688	109731816	109731687	109731687	Splice_Site	G	T	.
COAD	TCGA-F4-6570-01	KIAA1324	ENST00000369939.3,ENST00000527996.1,ENST00000369938.1,ENST00000369936.1,ENST00000529753.1,ENST00000457623.2	chr1	109733987:109734093:109734347:109734485:109735232:109735283,	109734348	109734485	109734346	109734346	Splice_Site	A	C	.
COAD	TCGA-A6-5661-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61298792:61298927:61304054:61304293:61308586:61308645,61300592:61300686:61304054:61304293:61308586:61308645,	61304055	61304293	61304295	61304296	Splice_Site	-	A	.
COAD	TCGA-CM-5861-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17831331:17831466:17834191:17834302:17837108:17837321,	17834192	17834302	17834191	17834191	Splice_Site	C	T	.
COAD	TCGA-CM-4743-01	KIF20A	ENST00000502338.1	chr5	137521200:137521399:137521649:137521741:137521982:137522120,137520783:137520886:137521649:137521741:137521982:137522120,	137521650	137521741	137521648	137521649	Splice_Site	AG	-	.
COAD	TCGA-AA-3510-01	KLHL20	ENST00000209884.4	chr1	173684122:173684217:173685141:173685205:173702851:173702967,	173685142	173685205	173685206	173685206	Splice_Site	G	T	.
COAD	TCGA-AM-5821-01	KLK12	ENST00000319590.4,ENST00000525263.1,ENST00000250351.4	chr19	51534114:51534177:51535131:51535391:51537235:51537395,	51535132	51535391	51535130	51535130	Splice_Site	A	G	.
COAD	TCGA-CA-6717-01	KLK2	ENST00000597439.1	chr19	51379994:51380014:51380140:51380301:51381659:51381861,	51380141	51380301	51380302	51380302	Splice_Site	G	C	.
COAD	TCGA-CA-6717-01	KLK2	ENST00000358049.4	chr19	51379994:51380014:51380127:51380301:51381659:51381861,	51380128	51380301	51380302	51380302	Splice_Site	G	C	.
COAD	TCGA-AM-5820-01	KNTC1	ENST00000450485.2,ENST00000333479.7	chr12	123031168:123031221:123031961:123032077:123032461:123032516,	123031962	123032077	123032079	123032079	Splice_Site	T	C	.
COAD	TCGA-A6-5661-01	L1CAM	ENST00000370055.1,ENST00000543994.1,ENST00000361981.3,ENST00000370060.1,ENST00000361699.4,ENST00000538883.1,ENST00000370057.3	chrX	153134295:153134407:153134974:153135118:153135257:153135389,	153134975	153135118	153134974	153134974	Splice_Site	C	T	.
COAD	TCGA-CA-6717-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181566	154181566	Splice_Site	G	T	.
COAD	TCGA-AD-6889-01	LEFTY2	ENST00000420304.2,ENST00000366820.5	chr1	226124303:226125504:226127060:226127300:226127455:226127571,	226127061	226127300	226127302	226127302	Splice_Site	T	C	.
COAD	TCGA-D5-6930-01	LGR6	ENST00000487787.1,ENST00000367278.3,ENST00000255432.7	chr1	202205049:202205121:202245433:202245649:202266635:202266704,202205049:202205121:202245433:202245649:202249908:202249980,	202245434	202245649	202245650	202245650	Splice_Site	G	A	.
COAD	TCGA-D5-6920-01	LILRB4	ENST00000430952.2	chr19	55178147:55178200:55179088:55179244:55179323:55179844,	55179089	55179244	55179246	55179246	Splice_Site	T	-	.
COAD	TCGA-D5-6920-01	LILRB4	ENST00000391736.1,ENST00000391733.3,ENST00000270452.2	chr19	55178147:55178200:55179085:55179244:55179323:55179844,	55179086	55179244	55179246	55179246	Splice_Site	T	-	.
COAD	TCGA-AY-6197-01	LIN7A	ENST00000549417.1,ENST00000261203.3	chr12	81242029:81242101:81283029:81283148:81331419:81331483,	81283030	81283148	81283028	81283028	Splice_Site	A	G	.
COAD	TCGA-CM-5861-01	LLGL2	ENST00000375227.4,ENST00000392550.3,ENST00000545227.2,ENST00000578363.1,ENST00000577200.1,ENST00000167462.5	chr17	73559096:73559259:73559411:73559544:73559832:73559887,	73559412	73559544	73559411	73559411	Splice_Site	G	A	.
COAD	TCGA-CM-4746-01	LMF2	ENST00000380796.3,ENST00000474879.2,ENST00000216080.5	chr22	50943566:50943582:50943657:50943763:50943831:50943966,	50943658	50943763	50943656	50943656	Splice_Site	A	G	.
COAD	TCGA-AD-6889-01	LMF2	ENST00000380796.3,ENST00000474879.2,ENST00000216080.5	chr22	50943566:50943582:50943657:50943763:50943831:50943966,	50943658	50943763	50943765	50943765	Splice_Site	T	C	.
COAD	TCGA-DM-A1D8-01	LOX	ENST00000505593.1,ENST00000513319.1,ENST00000231004.4,ENST00000503759.1	chr5	121401639:121402444:121405747:121405863:121406188:121406284,	121405748	121405863	121405747	121405747	Splice_Site	C	T	.
COAD	TCGA-DM-A28K-01	LPCAT1	ENST00000475622.1,ENST00000283415.3	chr5	1474071:1474225:1474674:1474800:1477518:1477601,	1474675	1474800	1474674	1474674	Splice_Site	C	T	.
COAD	TCGA-CM-5341-01	LRP1	ENST00000243077.3	chr12	57594481:57594598:57594816:57594936:57595279:57595402,	57594817	57594936	57594937	57594937	Splice_Site	G	A	.
COAD	TCGA-AD-6889-01	LRRC27	ENST00000368612.1,ENST00000472556.1,ENST00000368614.3,ENST00000432555.2,ENST00000392638.2,ENST00000368610.3,ENST00000462656.1,ENST00000475747.1,ENST00000368613.4	chr10	134169293:134169390:134174960:134175079:134178927:134179054,	134174961	134175079	134174960	134174960	Splice_Site	G	T	.
COAD	TCGA-G4-6323-01	LSM14A	ENST00000586157.1	chr19	34699833:34699956:34706500:34706566:34710295:34710478,	34706501	34706566	34706500	34706500	Splice_Site	G	C	.
COAD	TCGA-AA-3663-01	LYG1	ENST00000308528.4,ENST00000409448.1	chr2	99900719:99900974:99901150:99901283:99907699:99907884,	99901151	99901283	99901284	99901284	Splice_Site	C	A	.
COAD	TCGA-AA-3492-01	MACROD1	ENST00000255681.6	chr11	63767698:63767815:63782723:63782753:63918710:63918751,	63782724	63782753	63782754	63782754	Splice_Site	C	T	.
COAD	TCGA-D5-6928-01	MAGED2	ENST00000375060.1,ENST00000218439.4,ENST00000396224.1,ENST00000375053.2,ENST00000375058.1,ENST00000375062.4,ENST00000347546.4,ENST00000375068.1	chrX	54837682:54837746:54838006:54838086:54838589:54838684,	54838007	54838086	54838088	54838088	Splice_Site	T	C	.
COAD	TCGA-CM-6171-01	MAN2A2	ENST00000560451.1,ENST00000558161.1,ENST00000558171.1,ENST00000557865.1,ENST00000560192.1,ENST00000360468.3,ENST00000559717.1	chr15	91453445:91453522:91453730:91453913:91454076:91454191,	91453731	91453913	91453730	91453730	Splice_Site	G	-	.
COAD	TCGA-AM-5820-01	MAP3K6	ENST00000472410.1,ENST00000493901.1,ENST00000357582.2,ENST00000374040.3	chr1	27688195:27688358:27688581:27688741:27689131:27689244,	27688582	27688741	27688743	27688743	Splice_Site	T	C	.
COAD	TCGA-G4-6628-01	MAPKAPK3	ENST00000357955.2,ENST00000446044.1,ENST00000430409.1	chr3	50655140:50655215:50677796:50677936:50679137:50679202,	50677797	50677936	50677938	50677938	Splice_Site	T	C	.
COAD	TCGA-AA-3663-01	MAPKAPK3	ENST00000357955.2,ENST00000446044.1,ENST00000430409.1	chr3	50677796:50677936:50679137:50679202:50679683:50679763,	50679138	50679202	50679204	50679204	Splice_Site	T	C	.
COAD	TCGA-CM-4746-01	MATN2	ENST00000521689.1,ENST00000518154.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000524308.1,ENST00000522270.1	chr8	99015888:99016011:99019332:99019455:99019706:99019730,	99019333	99019455	99019456	99019456	Splice_Site	G	A	.
COAD	TCGA-D5-6537-01	MATN2	ENST00000521689.1,ENST00000518154.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000524308.1,ENST00000522270.1	chr8	99015888:99016011:99019332:99019455:99019706:99019730,	99019333	99019455	99019456	99019456	Splice_Site	G	A	.
COAD	TCGA-CM-4746-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000486937.1,ENST00000291688.1	chr21	47676702:47676900:47678852:47679005:47680706:47680820,	47678853	47679005	47678852	47678852	Splice_Site	C	T	.
COAD	TCGA-A6-6780-01	MCMBP	ENST00000360003.3,ENST00000466047.1,ENST00000369077.3	chr10	121616858:121616951:121618395:121618437:121618552:121618693,	121618396	121618437	121618394	121618394	Splice_Site	A	G	.
COAD	TCGA-AA-3492-01	MCRS1	ENST00000551625.1,ENST00000343810.4,ENST00000551598.1,ENST00000357123.4,ENST00000548602.1,ENST00000550165.1,ENST00000546244.1,ENST00000547182.1	chr12	49952625:49952753:49952996:49953084:49953235:49953318,	49952997	49953084	49953086	49953087	Splice_Site	-	G	.
COAD	TCGA-AA-3663-01	METRNL	ENST00000570778.1,ENST00000320095.7,ENST00000571814.1	chr17	81042813:81043199:81050911:81050971:81052000:81052221,	81050912	81050971	81050973	81050973	Splice_Site	T	C	.
COAD	TCGA-AM-5821-01	MFSD11	ENST00000355954.3,ENST00000588460.1,ENST00000593181.1,ENST00000590514.1,ENST00000336509.4,ENST00000588768.1,ENST00000586622.1,ENST00000585584.1,ENST00000588670.1	chr17	74750128:74750169:74763467:74763533:74765827:74765922,	74763468	74763533	74763534	74763534	Splice_Site	G	A	.
COAD	TCGA-AD-6889-01	MFSD1	ENST00000480292.1,ENST00000415822.2,ENST00000392813.4,ENST00000484166.1,ENST00000465624.1,ENST00000264266.8,ENST00000471500.1	chr3	158537437:158537536:158538003:158538115:158539385:158539442,	158538004	158538115	158538003	158538003	Splice_Site	G	A	.
COAD	TCGA-AY-6197-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42049985:42050037:42052520:42052727:42053936:42054048,	42052521	42052727	42052728	42052728	Splice_Site	G	T	.
COAD	TCGA-CM-6674-01	MIB2	ENST00000489635.1	chr1	1551887:1551994:1558768:1558862:1559153:1559325,	1558769	1558862	1558768	1558768	Splice_Site	G	T	.
COAD	TCGA-CM-6674-01	MIB2	ENST00000378710.3,ENST00000505820.2,ENST00000357210.4,ENST00000360522.4,ENST00000520777.1,ENST00000487053.1,ENST00000504599.1,ENST00000511502.1,ENST00000507229.1,ENST00000518681.1	chr1	1551887:1551994:1558768:1559079:1559153:1559325,	1558769	1559079	1558768	1558768	Splice_Site	G	T	.
COAD	TCGA-AZ-6601-01	MKNK2	ENST00000309340.7,ENST00000588346.1,ENST00000591601.1,ENST00000250896.3	chr19	2043501:2043581:2046184:2046282:2046365:2046450,	2046185	2046282	2046283	2046283	Splice_Site	C	T	.
COAD	TCGA-CM-4748-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75513078	75513078	Splice_Site	C	A	.
COAD	TCGA-CM-6162-01	MNAT1	ENST00000261245.4,ENST00000556525.1,ENST00000539616.2	chr14	61264804:61264878:61275042:61275146:61278704:61278845,	61275043	61275146	61275148	61275148	Splice_Site	T	C	.
COAD	TCGA-AZ-4315-01	MND1	ENST00000509752.1,ENST00000240488.3,ENST00000508731.1,ENST00000504860.1	chr4	154271215:154271281:154276805:154276863:154279625:154279774,	154276806	154276863	154276805	154276805	Splice_Site	G	T	.
COAD	TCGA-AD-6889-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539336.2,ENST00000545556.2,ENST00000606320.1,ENST00000302349.5	chr12	123687796:123687922:123694602:123694709:123699290:123699381,	123694603	123694709	123694601	123694601	Splice_Site	A	G	.
COAD	TCGA-A6-5661-01	MRPS25	ENST00000253686.2	chr3	15091387:15091442:15094886:15094974:15100875:15100982,15094031:15094140:15094886:15094974:15100875:15100982,	15094887	15094974	15094885	15094885	Splice_Site	A	G	.
COAD	TCGA-AD-5900-01	MTCH1	ENST00000373627.5	chr6	36938422:36938470:36940427:36940572:36943433:36943493,	36940428	36940572	36940574	36940575	Splice_Site	-	A	.
COAD	TCGA-AD-5900-01	MTCH1	ENST00000538808.1,ENST00000373616.5,ENST00000460219.1,ENST00000418541.2	chr6	36938422:36938470:36940478:36940572:36943433:36943493,	36940479	36940572	36940574	36940575	Splice_Site	-	A	.
COAD	TCGA-DM-A28G-01	MTF2	ENST00000545708.1,ENST00000370303.4,ENST00000540243.1,ENST00000370298.4,ENST00000467953.1	chr1	93584889:93584958:93586105:93586229:93599259:93599297,93584889:93584958:93586105:93586229:93592788:93592856,	93586106	93586229	93586105	93586105	Splice_Site	G	A	.
COAD	TCGA-CM-4743-01	MUC16	ENST00000397910.4	chr19	9008172:9008345:9009266:9009334:9009587:9009709,	9009267	9009334	9009335	9009335	Splice_Site	C	T	.
COAD	TCGA-AA-3713-01	MYH9	ENST00000216181.5	chr22	36715584:36715680:36716264:36716408:36716842:36716941,	36716265	36716408	36716409	36716409	Splice_Site	C	T	.
COAD	TCGA-A6-6780-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4,ENST00000463743.1	chr10	95111421:95111603:95113567:95113645:95115384:95115493,	95113568	95113645	95113647	95113648	Splice_Site	-	A	.
COAD	TCGA-AD-6889-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4,ENST00000463743.1	chr10	95111421:95111603:95113567:95113645:95115384:95115493,	95113568	95113645	95113647	95113648	Splice_Site	-	A	.
COAD	TCGA-AA-3510-01	NAALAD2	ENST00000534061.1,ENST00000321955.4	chr11	89906991:89907083:89909139:89909230:89911020:89911285,	89909140	89909230	89909139	89909139	Splice_Site	G	T	.
COAD	TCGA-AU-6004-01	NAE1	ENST00000394074.2,ENST00000567743.1	chr16	66858757:66858788:66860425:66860486:66864749:66864820,	66860426	66860486	66860487	66860487	Splice_Site	C	A	.
COAD	TCGA-CM-4743-01	NAGPA	ENST00000562746.1,ENST00000312251.3,ENST00000568202.1	chr16	5077135:5077199:5077278:5077380:5077846:5077894,	5077279	5077380	5077277	5077277	Splice_Site	A	G	.
COAD	TCGA-CM-5864-01	NBEA	ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3	chr13	35785189:35785316:35806628:35806756:35864525:35864587,	35806629	35806756	35806757	35806757	Splice_Site	G	T	.
COAD	TCGA-AU-6004-01	NCAPG	ENST00000251496.2,ENST00000514176.1,ENST00000509719.1	chr4	17818883:17819076:17819561:17819711:17824605:17824746,	17819562	17819711	17819713	17819713	Splice_Site	T	C	.
COAD	TCGA-F4-6856-01	NCKIPSD	ENST00000341520.4,ENST00000416649.2,ENST00000470006.1,ENST00000294129.2	chr3	48716508:48716616:48716809:48716890:48717007:48717146,	48716810	48716890	48716892	48716893	Splice_Site	-	G	.
COAD	TCGA-D5-6540-01	NDEL1	ENST00000380025.4	chr17	8354098:8354271:8358113:8358205:8363326:8363478,8354098:8354271:8358113:8358205:8370247:8370976,	8358114	8358205	8358113	8358113	Splice_Site	G	A	.
COAD	TCGA-AZ-6598-01	NDUFB5	ENST00000496904.1,ENST00000493866.1	chr3	179333794:179333837:179334770:179334832:179341707:179341879,179333794:179333837:179334770:179334832:179336202:179336265,179322694:179322727:179334770:179334832:179336202:179336265,	179334771	179334832	179334770	179334770	Splice_Site	G	T	.
COAD	TCGA-D5-6898-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	206994811:206994966:206997668:206997829:207003208:207003338,	206997669	206997829	206997668	206997668	Splice_Site	C	A	.
COAD	TCGA-AZ-6598-01	NDUFS4	ENST00000506974.1,ENST00000502423.1	chr5	52899281:52899360:52942062:52942235:52978947:52978968,52899281:52899360:52942062:52942235:52954380:52954454,52900636:52900725:52942062:52942235:52954380:52954454,	52942063	52942235	52942236	52942236	Splice_Site	G	A	.
COAD	TCGA-A6-6650-01	NDUFS8	ENST00000532399.1,ENST00000526446.1,ENST00000313468.5	chr11	67798179:67798200:67799618:67799676:67799752:67799803,	67799619	67799676	67799678	67799678	Splice_Site	T	G	.
COAD	TCGA-G4-6628-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29677200:29677336:29679274:29679432:29683477:29683529,	29679275	29679432	29679433	29679433	Splice_Site	G	A	.
COAD	TCGA-AM-5821-01	NIPAL2	ENST00000341166.3	chr8	99204985:99205318:99205612:99205640:99206955:99207011,	99205613	99205640	99205612	99205612	Splice_Site	C	T	.
COAD	TCGA-AD-5900-01	NIT2	ENST00000465368.1,ENST00000480073.1,ENST00000478856.1	chr3	100053613:100053642:100057930:100058049:100058658:100058779,	100057931	100058049	100058051	100058051	Splice_Site	T	G	.
COAD	TCGA-G4-6588-01	NOC4L	ENST00000330579.1	chr12	132633388:132633440:132635525:132635586:132635802:132635913,	132635526	132635586	132635525	132635525	Splice_Site	G	-	.
COAD	TCGA-CM-5861-01	NOD2	ENST00000300589.2	chr16	50750497:50750581:50750801:50750885:50753835:50753919,	50750802	50750885	50750887	50750887	Splice_Site	T	C	.
COAD	TCGA-AD-6889-01	NPNT	ENST00000379987.2,ENST00000514632.1,ENST00000427316.2,ENST00000506666.1,ENST00000514622.1,ENST00000453617.2,ENST00000503451.1	chr4	106880244:106880283:106888344:106888601:106891541:106892827,106880244:106880283:106888344:106888601:106890051:106890064,	106888345	106888601	106888343	106888343	Splice_Site	A	G	.
COAD	TCGA-AA-3663-01	NPR2	ENST00000342694.2,ENST00000464810.1	chr9	35800705:35800838:35801066:35801151:35801639:35801760,	35801067	35801151	35801152	35801152	Splice_Site	G	A	.
COAD	TCGA-CA-6717-01	NR1D2	ENST00000492552.1,ENST00000383773.4,ENST00000312521.4,ENST00000468700.1	chr3	23996116:23996294:23997527:23997616:24001161:24001306,	23997528	23997616	23997527	23997527	Splice_Site	G	T	.
COAD	TCGA-G4-6588-01	NRG3	ENST00000372142.2,ENST00000404547.1,ENST00000555784.1	chr10	84738726:84738876:84744538:84744610:84744853:84745361,	84744539	84744610	84744538	84744538	Splice_Site	G	T	.
COAD	TCGA-G4-6309-01	NT5DC2	ENST00000307092.4,ENST00000307076.4,ENST00000422318.2,ENST00000492555.1,ENST00000478091.1,ENST00000466112.1,ENST00000459839.1,ENST00000463947.1	chr3	52559075:52559119:52559224:52559311:52561309:52561382,	52559225	52559311	52559312	52559312	Splice_Site	C	A	.
COAD	TCGA-A6-5665-01	NUAK1	ENST00000261402.2	chr12	106477641:106477707:106480511:106480663:106500182:106500303,	106480512	106480663	106480510	106480510	Splice_Site	A	G	.
COAD	TCGA-G4-6303-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17629626:17629770:17632880:17633075:17637383:17638001,	17632881	17633075	17633077	17633078	Splice_Site	-	A	.
COAD	TCGA-CA-6717-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1	chr5	37292980:37293087:37294430:37294567:37298969:37299080,	37294431	37294567	37294429	37294429	Splice_Site	A	G	.
COAD	TCGA-DM-A1DA-01	NUP188	ENST00000372577.2,ENST00000477069.1,ENST00000495726.1	chr9	131757597:131757793:131760429:131760507:131760816:131760875,	131760430	131760507	131760508	131760508	Splice_Site	G	A	.
COAD	TCGA-G4-6588-01	NUP93	ENST00000564887.1,ENST00000542526.1,ENST00000308159.5,ENST00000569842.1	chr16	56866206:56866300:56867126:56867318:56868039:56868166,	56867127	56867318	56867319	56867319	Splice_Site	G	A	.
COAD	TCGA-AZ-6601-01	NUTF2	ENST00000568233.1,ENST00000568390.1	chr16	67881244:67881359:67899004:67899132:67902242:67902314,67880837:67880888:67899004:67899132:67902242:67902314,	67899005	67899132	67899133	67899133	Splice_Site	G	A	.
COAD	TCGA-G4-6302-01	OTUD6B	ENST00000285420.4	chr8	92083365:92083517:92086058:92086139:92090583:92090896,	92086059	92086139	92086140	92086140	Splice_Site	G	A	.
COAD	TCGA-A6-6781-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000571617.1,ENST00000571507.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79801941:79801968:79803019:79803106:79803436:79803523,	79803020	79803106	79803019	79803019	Splice_Site	C	T	.
COAD	TCGA-AD-6963-01	PAK1	ENST00000528203.1,ENST00000278568.4	chr11	77034313:77034405:77036372:77036421:77043774:77043912,	77036373	77036421	77036422	77036422	Splice_Site	C	T	.
COAD	TCGA-F4-6703-01	PAK1	ENST00000528203.1,ENST00000356341.3,ENST00000527457.1,ENST00000530617.1,ENST00000278568.4,ENST00000533568.1,ENST00000533468.1	chr11	77069942:77070062:77085372:77085410:77090285:77090396,	77085373	77085410	77085371	77085371	Splice_Site	A	G	.
COAD	TCGA-AD-5900-01	PARD3B	ENST00000358768.2,ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205410722:205410842:205550903:205551005:205829874:205830046,	205550904	205551005	205550903	205550903	Splice_Site	G	T	.
COAD	TCGA-AM-5820-01	PAX3	ENST00000392070.2,ENST00000392069.2,ENST00000409551.3	chr2	223066130:223066161:223066662:223066909:223084858:223085073,	223066663	223066909	223066911	223066912	Splice_Site	-	A	.
COAD	TCGA-CM-6163-01	PCDH15	ENST00000463095.1,ENST00000320301.6,ENST00000448885.1,ENST00000437009.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55616934:55617023:55626401:55626617:55663002:55663130,	55626402	55626617	55626401	55626401	Splice_Site	C	T	.
COAD	TCGA-G4-6302-01	PCSK4	ENST00000588195.1,ENST00000591201.1,ENST00000586616.1,ENST00000300954.5,ENST00000441747.2	chr19	1483836:1483940:1484025:1484126:1486851:1486972,	1484026	1484126	1484127	1484127	Splice_Site	C	A	.
COAD	TCGA-AM-5821-01	PCSK7	ENST00000540028.1,ENST00000534529.1,ENST00000320934.3,ENST00000527037.1	chr11	117078685:117078780:117079612:117079769:117089181:117089284,	117079613	117079769	117079612	117079612	Splice_Site	C	T	.
COAD	TCGA-AM-5821-01	PCSK7	ENST00000533135.1	chr11	117078685:117078780:117079612:117079762:117089181:117089284,	117079613	117079762	117079612	117079612	Splice_Site	C	T	.
COAD	TCGA-AD-6964-01	PDE3B	ENST00000282096.4,ENST00000455098.2	chr11	14865372:14865572:14880588:14880792:14882750:14882912,	14880589	14880792	14880794	14880794	Splice_Site	T	C	.
COAD	TCGA-AA-3663-01	PDE5A	ENST00000394439.1,ENST00000513594.1,ENST00000512739.1,ENST00000264805.5,ENST00000354960.3	chr4	120442154:120442215:120446703:120446850:120460114:120460174,	120446704	120446850	120446851	120446851	Splice_Site	C	A	.
COAD	TCGA-AY-6386-01	PDZRN3	ENST00000263666.4,ENST00000479530.1,ENST00000462146.2,ENST00000535920.1,ENST00000492909.1,ENST00000494559.1,ENST00000466780.1,ENST00000466348.1	chr3	73434848:73434936:73437118:73437220:73438966:73439029,	73437119	73437220	73437221	73437222	Splice_Site	-	T	.
COAD	TCGA-CM-6166-01	PDZRN3	ENST00000263666.4,ENST00000479530.1,ENST00000462146.2,ENST00000535920.1,ENST00000492909.1,ENST00000494559.1,ENST00000466780.1,ENST00000466348.1	chr3	73434848:73434936:73437118:73437220:73438966:73439029,	73437119	73437220	73437221	73437222	Splice_Site	-	T	.
COAD	TCGA-A6-5665-01	PELI1	ENST00000358912.4	chr2	64323546:64323744:64327531:64327633:64331834:64331964,	64327532	64327633	64327530	64327530	Splice_Site	A	G	.
COAD	TCGA-CA-6718-01	PEX13	ENST00000295030.5	chr2	61258553:61259248:61272860:61272986:61275606:61279125,	61272861	61272986	61272860	61272860	Splice_Site	G	A	.
COAD	TCGA-AZ-4615-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100922154:100922299:100933177:100933483:100962490:100962607,	100933178	100933483	100933176	100933176	Splice_Site	A	G	.
COAD	TCGA-A6-5661-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100933177:100933483:100962490:100962607:100996737:100996889,	100962491	100962607	100962609	100962610	Splice_Site	-	A	.
COAD	TCGA-AD-6964-01	PHIP	ENST00000275034.4	chr6	79664948:79664999:79665329:79665399:79668191:79668317,	79665330	79665399	79665401	79665401	Splice_Site	T	C	.
COAD	TCGA-AM-5820-01	PIAS2	ENST00000590127.1,ENST00000545673.1,ENST00000592011.1,ENST00000585916.1,ENST00000398654.3,ENST00000324794.7,ENST00000592212.1	chr18	44424696:44424802:44426669:44426804:44435307:44435398,	44426670	44426804	44426805	44426805	Splice_Site	C	A	.
COAD	TCGA-F4-6856-01	PICALM	ENST00000532317.1,ENST00000526961.1,ENST00000529760.1,ENST00000530692.1	chr11	85687691:85687725:85689112:85689136:85692171:85692271,	85689113	85689136	85689112	85689112	Splice_Site	C	T	.
COAD	TCGA-AD-6889-01	PIGB	ENST00000539642.1	chr15	55611470:55611611:55621921:55622052:55626064:55626205,	55621922	55622052	55621921	55621922	Splice_Site	-	T	.
COAD	TCGA-D5-6930-01	PIGB	ENST00000539642.1	chr15	55611470:55611611:55621921:55622052:55626064:55626205,	55621922	55622052	55621921	55621922	Splice_Site	-	T	.
COAD	TCGA-G4-6309-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591246	Splice_Site	A	G	.
COAD	TCGA-CA-5796-01	PIWIL1	ENST00000245255.3	chr12	130842025:130842098:130845724:130845925:130846042:130846146,	130845725	130845925	130845926	130845926	Splice_Site	G	A	.
COAD	TCGA-CK-5913-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9416206:9416295:9417648:9417799:9424627:9424677,	9417649	9417799	9417801	9417802	Splice_Site	-	GA	.
COAD	TCGA-AZ-4315-01	PLG	ENST00000308192.9	chr6	161155026:161155120:161157918:161158039:161159569:161159644,	161157919	161158039	161157918	161157918	Splice_Site	G	A	.
COAD	TCGA-A6-5665-01	PLSCR1	ENST00000448205.1,ENST00000493432.1,ENST00000463777.1	chr3	146239619:146239840:146243391:146243434:146251256:146251337,146234944:146234954:146243391:146243434:146251256:146251337,	146243392	146243434	146243390	146243390	Splice_Site	A	G	.
COAD	TCGA-CM-6163-01	PLXNA4	ENST00000359827.3,ENST00000321063.4	chr7	131888081:131888178:131895701:131895902:131908285:131908400,	131895702	131895902	131895903	131895903	Splice_Site	C	A	.
COAD	TCGA-D5-6536-01	PLXNC1	ENST00000258526.4,ENST00000551850.1,ENST00000546733.1	chr12	94562928:94563069:94575221:94575356:94580148:94580249,	94575222	94575356	94575221	94575221	Splice_Site	G	T	.
COAD	TCGA-A6-5665-01	POU2F2	ENST00000533720.1,ENST00000529952.1,ENST00000389341.5,ENST00000342301.4,ENST00000530982.3,ENST00000531773.1,ENST00000526816.2,ENST00000529067.1,ENST00000528894.4	chr19	42603867:42603973:42621401:42621518:42626277:42626334,	42621402	42621518	42621520	42621521	Splice_Site	-	G	.
COAD	TCGA-AA-3663-01	POU2F2	ENST00000533720.1,ENST00000529952.1,ENST00000389341.5,ENST00000342301.4,ENST00000530982.3,ENST00000531773.1,ENST00000526816.2,ENST00000529067.1,ENST00000528894.4	chr19	42603867:42603973:42621401:42621518:42626277:42626334,	42621402	42621518	42621520	42621521	Splice_Site	-	G	.
COAD	TCGA-F4-6570-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000524495.1,ENST00000530582.1,ENST00000533792.1	chr11	7663609:7663657:7669617:7669768:7670030:7670142,	7669618	7669768	7669616	7669616	Splice_Site	A	G	.
COAD	TCGA-G4-6628-01	PREPL	ENST00000378511.3,ENST00000410081.1,ENST00000409411.1,ENST00000409272.1,ENST00000438314.1,ENST00000409957.1,ENST00000426481.1,ENST00000541738.1,ENST00000425263.1,ENST00000260648.6,ENST00000378520.3,ENST00000409936.1	chr2	44571046:44571090:44571658:44571725:44573406:44573520,	44571659	44571725	44571726	44571726	Splice_Site	C	A	.
COAD	TCGA-AA-3663-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998014	169998014	Splice_Site	G	T	.
COAD	TCGA-AA-3663-01	PSMC5	ENST00000584536.1,ENST00000375812.4,ENST00000310144.6,ENST00000578570.1,ENST00000582130.1,ENST00000580864.1,ENST00000585123.1,ENST00000581882.1,ENST00000581842.1,ENST00000584320.1	chr17	61905497:61905569:61906853:61906923:61907211:61907309,	61906854	61906923	61906925	61906925	Splice_Site	T	C	.
COAD	TCGA-G4-6588-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54096512:54096675:54102763:54102892:54112826:54112912,54101475:54101631:54102763:54102892:54112826:54112912,	54102764	54102892	54102894	54102895	Splice_Site	-	A	.
COAD	TCGA-AZ-4615-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54125006:54125136:54125437:54125491:54127017:54127154,	54125438	54125491	54125493	54125493	Splice_Site	T	-	.
COAD	TCGA-A6-6780-01	PTAR1	ENST00000340434.4,ENST00000377200.5	chr9	72333565:72333600:72338241:72338546:72347054:72347268,	72338242	72338546	72338240	72338240	Splice_Site	A	G	.
COAD	TCGA-AZ-4616-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685269	89685269	Splice_Site	G	A	.
COAD	TCGA-F4-6807-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717609	89717609	Splice_Site	G	T	.
COAD	TCGA-AZ-4315-01	PTPN2	ENST00000309660.5,ENST00000589216.1,ENST00000591115.1,ENST00000592059.1,ENST00000353319.4,ENST00000591497.1,ENST00000327283.3,ENST00000592776.1	chr18	12817179:12817364:12830941:12831040:12836789:12836823,12825808:12825943:12830941:12831040:12836789:12836823,	12830942	12831040	12830941	12830941	Splice_Site	C	T	.
COAD	TCGA-AZ-6600-01	PYGB	ENST00000216962.4	chr20	25264739:25264887:25269060:25269119:25271116:25271258,	25269061	25269119	25269059	25269059	Splice_Site	A	T	.
COAD	TCGA-A6-6780-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000411894.1,ENST00000395841.2,ENST00000492498.1,ENST00000429339.1,ENST00000371242.2,ENST00000452119.1	chr20	55929087:55929184:55929767:55929872:55931501:55931568,	55929768	55929872	55929766	55929766	Splice_Site	A	G	.
COAD	TCGA-A6-6141-01	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141248549:141248644:141259374:141259451:141272698:141272782,	141259375	141259451	141259374	141259374	Splice_Site	G	A	.
COAD	TCGA-G4-6317-01	RBM17	ENST00000446108.1,ENST00000379888.4	chr10	6154172:6154324:6155470:6155544:6156011:6156110,	6155471	6155544	6155546	6155546	Splice_Site	T	C	.
COAD	TCGA-AU-6004-01	RBM6	ENST00000443081.1,ENST00000454079.1,ENST00000464013.1,ENST00000266022.4,ENST00000483350.1,ENST00000441115.1	chr3	50000008:50000118:50085677:50085752:50091767:50091828,50036884:50036946:50085677:50085752:50091767:50091828,	50085678	50085752	50085677	50085677	Splice_Site	G	A	.
COAD	TCGA-CM-4743-01	RBMS3	ENST00000383766.2	chr3	29323106:29323247:29476236:29476406:29529931:29529990,	29476237	29476406	29476407	29476407	Splice_Site	G	A	.
COAD	TCGA-CM-4743-01	RBMS3	ENST00000445033.1,ENST00000396583.3,ENST00000383767.2,ENST00000456853.1,ENST00000273139.9,ENST00000452462.1	chr3	29323106:29323247:29476233:29476406:29529931:29529990,	29476234	29476406	29476407	29476407	Splice_Site	G	A	.
COAD	TCGA-CA-6716-01	RFC5	ENST00000543153.1,ENST00000392542.2,ENST00000229043.3,ENST00000454402.2	chr12	118465766:118465835:118467575:118467630:118468986:118469241,	118467576	118467630	118467631	118467631	Splice_Site	G	A	.
COAD	TCGA-D5-5537-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	101008689:101008758:101011489:101011648:101014429:101014592,	101011490	101011648	101011489	101011489	Splice_Site	C	A	.
COAD	TCGA-AD-6895-01	RHOA	ENST00000454011.2	chr3	49405860:49405981:49412866:49413024:49449252:49449361,49399949:49400059:49412866:49413024:49449252:49449361,	49412867	49413024	49412866	49412866	Splice_Site	C	T	.
COAD	TCGA-AY-6197-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5754683:5754821:5756346:5756397:5760663:5760803,	5756347	5756397	5756345	5756345	Splice_Site	A	G	.
COAD	TCGA-CM-5864-01	RNF4	ENST00000511843.1,ENST00000314289.8,ENST00000502316.1,ENST00000509258.1,ENST00000511600.1,ENST00000511859.1,ENST00000507247.1,ENST00000509388.1,ENST00000506706.1	chr4	2498733:2498848:2502385:2502465:2513682:2513692,	2502386	2502465	2502466	2502466	Splice_Site	G	T	.
COAD	TCGA-DM-A0XD-01	RNPEPL1	ENST00000486058.1,ENST00000270357.4	chr2	241513970:241514045:241514446:241514559:241514918:241515027,	241514447	241514559	241514446	241514446	Splice_Site	G	A	.
COAD	TCGA-CA-6717-01	ROCK1	ENST00000399799.2	chr18	18540096:18540167:18546877:18547037:18547712:18547901,	18546878	18547037	18547038	18547038	Splice_Site	C	A	.
COAD	TCGA-CM-4743-01	RPL8	ENST00000528296.1,ENST00000533397.1,ENST00000526668.1,ENST00000527914.1,ENST00000394920.2,ENST00000262584.3,ENST00000529163.1,ENST00000531975.1,ENST00000528957.1	chr8	146015193:146015347:146015739:146015855:146016661:146016692,	146015740	146015855	146015856	146015856	Splice_Site	C	A	.
COAD	TCGA-AZ-6601-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34129831	34129831	Splice_Site	G	T	.
COAD	TCGA-CA-6717-01	SART3	ENST00000228284.3,ENST00000431469.2,ENST00000546815.1,ENST00000546728.1	chr12	108932720:108932865:108936803:108936928:108938202:108938254,	108936804	108936928	108936929	108936929	Splice_Site	C	A	.
COAD	TCGA-CM-5861-01	SCAF11	ENST00000474828.1,ENST00000395453.2,ENST00000369367.3,ENST00000395454.2	chr12	46355482:46355640:46357889:46357971:46384135:46384348,	46357890	46357971	46357888	46357888	Splice_Site	A	G	.
COAD	TCGA-AA-3663-01	SCG3	ENST00000542355.2,ENST00000220478.3	chr15	51988071:51988188:51991515:51991599:51993303:51993441,	51991516	51991599	51991601	51991601	Splice_Site	T	C	.
COAD	TCGA-D5-6927-01	SCLT1	ENST00000511426.1,ENST00000503401.1	chr4	129960195:129960251:129964549:129964622:129965147:129965206,129960384:129961367:129964549:129964622:129965147:129965206,	129964550	129964622	129964624	129964625	Splice_Site	-	A	.
COAD	TCGA-AA-3510-01	SCUBE2	ENST00000519788.2,ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000520467.1	chr11	9075189:9075306:9077339:9077456:9080849:9080972,	9077340	9077456	9077457	9077457	Splice_Site	C	T	.
COAD	TCGA-CA-6717-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39509935:39510091:39511989:39512076:39514366:39514528,	39511990	39512076	39512077	39512077	Splice_Site	C	A	.
COAD	TCGA-A6-5665-01	SERPINA6	ENST00000341584.3	chr14	94776072:94776343:94780372:94781004:94789603:94789656,	94780373	94781004	94780372	94780372	Splice_Site	C	-	.
COAD	TCGA-CK-5913-01	SFTPB	ENST00000519937.2,ENST00000409383.1,ENST00000393822.3,ENST00000342375.3,ENST00000428225.1	chr2	85890877:85890970:85892411:85892501:85892728:85892917,	85892412	85892501	85892503	85892504	Splice_Site	-	G	.
COAD	TCGA-CM-6162-01	SFTPC	ENST00000518615.1,ENST00000318561.3,ENST00000522109.1,ENST00000437090.2,ENST00000521315.1	chr8	22019321:22019383:22020086:22020245:22020592:22020627,	22020087	22020245	22020246	22020246	Splice_Site	G	A	.
COAD	TCGA-D5-6540-01	SGK1	ENST00000528577.1,ENST00000477460.2,ENST00000367858.5,ENST00000367857.5,ENST00000237305.7,ENST00000413996.3,ENST00000475719.2	chr6	134491243:134491573:134491963:134492053:134492160:134492316,	134491964	134492053	134492054	134492054	Splice_Site	C	G	.
COAD	TCGA-AA-3510-01	SH2D2A	ENST00000368198.3,ENST00000368199.3,ENST00000392306.2	chr1	156776966:156777137:156778994:156779282:156779452:156779599,	156778995	156779282	156778993	156778993	Splice_Site	A	C	.
COAD	TCGA-A6-5665-01	SIDT1	ENST00000463226.1,ENST00000393830.3,ENST00000264852.4	chr3	113327265:113327383:113329854:113329991:113330932:113331041,	113329855	113329991	113329854	113329854	Splice_Site	G	A	.
COAD	TCGA-G4-6588-01	SLC12A3	ENST00000563236.1,ENST00000262502.5,ENST00000566786.1,ENST00000438926.2	chr16	56913453:56913561:56914041:56914165:56916307:56916409,	56914042	56914165	56914040	56914040	Splice_Site	A	G	.
COAD	TCGA-AY-6197-01	SLC12A4	ENST00000572037.1	chr16	67991800:67991947:67995477:67995609:68002341:68002372,	67995478	67995609	67995476	67995476	Splice_Site	A	G	.
COAD	TCGA-A6-6648-01	SLC13A3	ENST00000435032.1	chr20	45204211:45204324:45212210:45212308:45216697:45216730,45194994:45195029:45212210:45212308:45216697:45216730,	45212211	45212308	45212209	45212209	Splice_Site	A	G	.
COAD	TCGA-AD-6889-01	SLC15A1	ENST00000376503.5	chr13	99358387:99358507:99360939:99361021:99361825:99361914,	99360940	99361021	99361023	99361023	Splice_Site	T	C	.
COAD	TCGA-A6-5665-01	SLC16A4	ENST00000369781.4,ENST00000461647.2	chr1	110921565:110921978:110923603:110923765:110924273:110924417,110921565:110921978:110923603:110923765:110931858:110931977,110919571:110919783:110923603:110923765:110924273:110924417,	110923604	110923765	110923602	110923602	Splice_Site	A	G	.
COAD	TCGA-CM-6162-01	SLC17A5	ENST00000355773.5	chr6	74310145:74310164:74320122:74320270:74325037:74325170,	74320123	74320270	74320122	74320122	Splice_Site	C	T	.
COAD	TCGA-F4-6459-01	SLC25A3	ENST00000228318.3,ENST00000551917.1,ENST00000548046.1,ENST00000550695.1	chr12	98987756:98987913:98989210:98989335:98991633:98991812,	98989211	98989335	98989336	98989336	Splice_Site	G	A	.
COAD	TCGA-F4-6703-01	SLC26A3	ENST00000340010.5	chr7	107412498:107412553:107414364:107414598:107415221:107415317,	107414365	107414598	107414363	107414363	Splice_Site	A	G	.
COAD	TCGA-CA-6717-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000522862.1,ENST00000309536.2,ENST00000522181.1	chr8	92261846:92262072:92301363:92301474:92307758:92307931,	92301364	92301474	92301363	92301363	Splice_Site	G	T	.
COAD	TCGA-CA-6718-01	SLC35F3	ENST00000366618.3,ENST00000366617.3	chr1	234454496:234454689:234455843:234455933:234458753:234460257,	234455844	234455933	234455843	234455843	Splice_Site	G	T	.
COAD	TCGA-A6-5665-01	SLC43A2	ENST00000412517.3,ENST00000571650.1,ENST00000382147.4,ENST00000301335.5	chr17	1479896:1480014:1481543:1481617:1486497:1486630,	1481544	1481617	1481619	1481620	Splice_Site	-	G	.
COAD	TCGA-AD-6889-01	SLC4A5	ENST00000425249.1,ENST00000444570.1,ENST00000436454.1,ENST00000357822.5,ENST00000346834.4,ENST00000394019.2,ENST00000377632.1,ENST00000377634.4,ENST00000423644.1	chr2	74512899:74513029:74531615:74531807:74542071:74542152,	74531616	74531807	74531615	74531615	Splice_Site	C	T	.
COAD	TCGA-AD-6964-01	SLC4A7	ENST00000437266.1,ENST00000440156.1,ENST00000454389.1,ENST00000425128.2,ENST00000428386.1,ENST00000455077.1,ENST00000419036.1,ENST00000437179.1,ENST00000295736.5,ENST00000428179.1,ENST00000457377.1,ENST00000438530.1,ENST00000446700.1,ENST00000388777.4,ENST00000435667.2,ENST00000445684.1	chr3	27436008:27436260:27436444:27436606:27439174:27439288,	27436445	27436606	27436607	27436607	Splice_Site	C	T	.
COAD	TCGA-AA-3663-01	SLCO2A1	ENST00000493729.1	chr3	133670051:133670188:133672506:133672605:133692506:133692669,	133672507	133672605	133672505	133672505	Splice_Site	A	G	.
COAD	TCGA-G4-6586-01	SLIT2	ENST00000273739.5,ENST00000508824.1,ENST00000503837.1,ENST00000504154.1,ENST00000503823.1	chr4	20270432:20270504:20469374:20469446:20482338:20482410,	20469375	20469446	20469448	20469448	Splice_Site	T	C	.
COAD	TCGA-AA-3510-01	SMAD3	ENST00000537194.2,ENST00000540846.2,ENST00000558827.1,ENST00000327367.4,ENST00000439724.3	chr15	67462891:67462942:67473578:67473791:67479702:67479785,67462891:67462942:67473578:67473791:67477064:67477116,	67473579	67473791	67473578	67473578	Splice_Site	G	A	.
COAD	TCGA-D5-6924-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183516237:183516387:183518342:183518423:183518898:183519058,183515100:183515472:183518342:183518423:183518898:183519058,	183518343	183518423	183518342	183518342	Splice_Site	G	A	.
COAD	TCGA-AD-6964-01	SMYD3	ENST00000470863.1,ENST00000462422.1,ENST00000541742.1,ENST00000455277.1,ENST00000490107.1,ENST00000453676.1,ENST00000388985.4,ENST00000403792.3	chr1	246493781:246493839:246498668:246498776:246518332:246518396,	246498669	246498776	246498777	246498777	Splice_Site	C	T	.
COAD	TCGA-AD-6964-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1,ENST00000523085.1	chr8	51314769:51314904:51351102:51351159:51362227:51362285,	51351103	51351159	51351101	51351101	Splice_Site	A	T	.
COAD	TCGA-A6-5665-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3	chr14	35031865:35032381:35036891:35036977:35037059:35037219,	35036892	35036977	35036890	35036890	Splice_Site	A	G	.
COAD	TCGA-CA-6717-01	SOBP	ENST00000317357.5	chr6	107827445:107827631:107854662:107854814:107908283:107908379,	107854663	107854814	107854662	107854662	Splice_Site	G	T	.
COAD	TCGA-AA-3510-01	SORCS3	ENST00000369701.3	chr10	106865154:106865273:106899154:106899244:106907374:106907554,	106899155	106899244	106899245	106899245	Splice_Site	G	A	.
COAD	TCGA-AZ-4315-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16208328:16208501:16256127:16256217:16339991:16340199,	16256128	16256217	16256219	16256219	Splice_Site	T	C	.
COAD	TCGA-CM-6679-01	SP140	ENST00000486687.2,ENST00000392045.3	chr2	231115695:231115776:231118030:231118132:231134246:231134333,231115695:231115776:231118030:231118132:231120166:231120247,	231118031	231118132	231118030	231118030	Splice_Site	G	A	.
COAD	TCGA-CM-4743-01	SPATA18	ENST00000419395.2,ENST00000295213.4	chr4	52948552:52948676:52951081:52951165:52960692:52960738,	52951082	52951165	52951167	52951167	Splice_Site	T	C	.
COAD	TCGA-AZ-4315-01	SPATA6L	ENST00000461761.1,ENST00000496798.1,ENST00000223517.5,ENST00000471669.1,ENST00000406861.2,ENST00000485616.1,ENST00000454239.2,ENST00000381890.5,ENST00000451763.2,ENST00000381895.5,ENST00000486047.1	chr9	4635274:4635399:4661898:4662036:4666211:4666256,4656040:4656089:4661898:4662036:4666211:4666256,	4661899	4662036	4662038	4662038	Splice_Site	T	G	.
COAD	TCGA-CA-6717-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000557866.1,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44925702:44925835:44941063:44941209:44943688:44943842,	44941064	44941209	44941210	44941210	Splice_Site	C	A	.
COAD	TCGA-AA-3663-01	SPTAN1	ENST00000372739.3	chr9	131371400:131371563:131371929:131371944:131373992:131374124,	131371930	131371944	131371928	131371928	Splice_Site	A	G	.
COAD	TCGA-AA-3660-01	SSBP2	ENST00000507655.1,ENST00000505980.1,ENST00000504174.1,ENST00000320672.4,ENST00000512098.1,ENST00000509013.2	chr5	80809476:80809536:80911291:80911376:80932375:80932437,	80911292	80911376	80911291	80911291	Splice_Site	C	T	.
COAD	TCGA-AD-5900-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3	chr7	23830442:23830565:23854762:23854831:23871754:23872068,	23854763	23854831	23854762	23854762	Splice_Site	G	A	.
COAD	TCGA-CA-6717-01	STRA6	ENST00000574278.1,ENST00000395105.4,ENST00000569936.1,ENST00000432245.2,ENST00000323940.5,ENST00000574439.1,ENST00000535552.1,ENST00000563965.1,ENST00000573214.1,ENST00000449139.2,ENST00000416286.3	chr15	74488348:74488488:74489678:74489764:74490092:74490159,	74489679	74489764	74489766	74489766	Splice_Site	T	G	.
COAD	TCGA-AM-5820-01	STX16	ENST00000464640.1,ENST00000359617.4,ENST00000438253.1,ENST00000361770.5,ENST00000312283.8,ENST00000361830.3,ENST00000371132.4,ENST00000358029.4,ENST00000371141.4,ENST00000355957.5	chr20	57243042:57243183:57244346:57244509:57245567:57245659,	57244347	57244509	57244510	57244510	Splice_Site	G	A	.
COAD	TCGA-AM-5820-01	STX16	ENST00000468590.1	chr20	57243042:57243183:57244357:57244509:57245567:57245659,	57244358	57244509	57244510	57244510	Splice_Site	G	A	.
COAD	TCGA-F4-6570-01	STXBP3	ENST00000370008.3	chr1	109318954:109319045:109321907:109322032:109325043:109325139,	109321908	109322032	109321907	109321907	Splice_Site	G	T	.
COAD	TCGA-A6-5661-01	STXBP5	ENST00000321680.6	chr6	147660314:147660374:147660472:147660520:147674458:147674509,	147660473	147660520	147660522	147660522	Splice_Site	T	C	.
COAD	TCGA-D5-6928-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000554584.1	chr14	64460552:64460687:64461761:64461920:64463664:64463876,	64461762	64461920	64461922	64461922	Splice_Site	T	C	.
COAD	TCGA-AA-3510-01	SYT9	ENST00000318881.6	chr11	7273400:7273562:7324269:7324621:7334625:7335172,	7324270	7324621	7324622	7324622	Splice_Site	G	T	.
COAD	TCGA-G4-6588-01	TAF2	ENST00000523904.1,ENST00000378164.2	chr8	120801918:120801986:120803563:120803699:120805605:120805691,	120803564	120803699	120803701	120803702	Splice_Site	-	A	.
COAD	TCGA-CA-6718-01	TBC1D12	ENST00000225235.4	chr10	96281711:96281840:96282100:96282210:96290958:96291217,	96282101	96282210	96282100	96282100	Splice_Site	G	A	.
COAD	TCGA-D5-6927-01	TBC1D4	ENST00000431480.2,ENST00000488955.1	chr13	75894149:75894173:75898372:75898537:75900332:75900386,75886917:75887034:75898372:75898537:75900332:75900386,	75898373	75898537	75898539	75898539	Splice_Site	T	G	.
COAD	TCGA-AY-6197-01	TBCK	ENST00000467183.2,ENST00000394708.2,ENST00000432496.2,ENST00000510927.1,ENST00000394706.3,ENST00000515705.1,ENST00000361687.4,ENST00000511011.1,ENST00000273980.5	chr4	107114765:107114927:107115874:107115911:107133906:107133992,	107115875	107115911	107115874	107115874	Splice_Site	C	T	.
COAD	TCGA-A6-6653-01	TBL1Y	ENST00000383032.1,ENST00000346432.3,ENST00000355162.2	chrY	6955307:6955473:6958129:6958231:6959512:6959724,	6958130	6958231	6958128	6958128	Splice_Site	A	G	.
COAD	TCGA-CA-6717-01	TBX15	ENST00000207157.3,ENST00000369429.3	chr1	119466058:119466226:119467268:119467440:119469132:119469234,	119467269	119467440	119467441	119467441	Splice_Site	C	A	.
COAD	TCGA-G4-6293-01	TCF7L2	ENST00000369395.1,ENST00000355717.4,ENST00000542695.1,ENST00000369397.4,ENST00000352065.5	chr10	114710965:114711032:114711241:114711366:114724314:114724383,114710965:114711032:114711241:114711366:114799783:114799885,	114711242	114711366	114711367	114711368	Splice_Site	-	T	.
COAD	TCGA-AM-5820-01	TCTEX1D1	ENST00000282670.2	chr1	67236069:67236161:67241961:67242086:67242933:67243384,	67241962	67242086	67242087	67242087	Splice_Site	G	A	.
COAD	TCGA-CA-6717-01	TESK2	ENST00000538496.1,ENST00000486676.1,ENST00000372086.3	chr1	45811548:45811666:45812364:45812451:45812650:45812730,	45812365	45812451	45812452	45812452	Splice_Site	C	A	.
COAD	TCGA-G4-6588-01	TEX2	ENST00000583501.1,ENST00000258991.3,ENST00000583097.1,ENST00000584379.1,ENST00000577489.1	chr17	62248459:62248559:62254684:62254831:62265527:62265775,	62254685	62254831	62254683	62254683	Splice_Site	A	G	.
COAD	TCGA-AM-5821-01	TEX26	ENST00000380473.3	chr13	31526796:31526962:31531009:31531166:31540358:31540535,	31531010	31531166	31531009	31531009	Splice_Site	G	A	.
COAD	TCGA-AA-3510-01	TF	ENST00000482271.1,ENST00000264998.3,ENST00000402696.3	chr3	133474206:133474339:133475125:133475181:133475674:133475767,	133475126	133475181	133475182	133475182	Splice_Site	G	A	.
COAD	TCGA-AZ-6601-01	TFB2M	ENST00000366514.4	chr1	246707822:246707983:246711846:246711909:246714514:246714604,	246711847	246711909	246711910	246711910	Splice_Site	C	A	.
COAD	TCGA-A6-6137-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115581946:115582094:115590927:115591003:115594639:115594696,	115590928	115591003	115590927	115590927	Splice_Site	C	T	.
COAD	TCGA-CA-6717-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115590927:115591003:115594639:115594696:115596732:115596847,	115594640	115594696	115594697	115594697	Splice_Site	C	A	.
COAD	TCGA-A6-5665-01	THOC1	ENST00000579232.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6,ENST00000577552.1	chr18	226800:226901:246323:246455:247848:247908,	246324	246455	246322	246322	Splice_Site	A	G	.
COAD	TCGA-G4-6628-01	TMC5	ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19451281:19452148:19455402:19455572:19460863:19460953,	19455403	19455572	19455573	19455573	Splice_Site	G	A	.
COAD	TCGA-AA-3663-01	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000465705.1,ENST00000392129.6,ENST00000580248.1,ENST00000481278.1	chr1	165712415:165712548:165721338:165721406:165723464:165723511,	165721339	165721406	165721337	165721337	Splice_Site	A	G	.
COAD	TCGA-CA-6717-01	TMIGD1	ENST00000328886.4	chr17	28643365:28643708:28644210:28644251:28651833:28652112,28643365:28643708:28644210:28644251:28645827:28645931,	28644211	28644251	28644209	28644209	Splice_Site	A	G	.
COAD	TCGA-AM-5821-01	TMPRSS3	ENST00000474596.1,ENST00000433957.2,ENST00000398405.1,ENST00000398397.3,ENST00000380399.1,ENST00000482761.1,ENST00000291532.3	chr21	43802173:43802343:43803141:43803307:43804078:43804122,	43803142	43803307	43803308	43803309	Splice_Site	-	TA	.
COAD	TCGA-AM-5821-01	TMPRSS4	ENST00000522824.1,ENST00000437212.3	chr11	117947887:117948020:117965530:117965570:117969699:117969749,	117965531	117965570	117965530	117965530	Splice_Site	A	G	.
COAD	TCGA-A6-6141-01	TMPRSS5	ENST00000536856.1,ENST00000539732.1,ENST00000538955.1,ENST00000540540.1,ENST00000299882.5,ENST00000545579.1,ENST00000538770.1	chr11	113563947:113563971:113565199:113565362:113566121:113566165,	113565200	113565362	113565199	113565199	Splice_Site	C	T	.
COAD	TCGA-AM-5820-01	TNK1	ENST00000311668.2,ENST00000570896.1,ENST00000576812.1	chr17	7290452:7290473:7290696:7290776:7291724:7292023,	7290697	7290776	7290695	7290695	Splice_Site	A	G	.
COAD	TCGA-A6-6780-01	TOR1AIP1	ENST00000474875.1,ENST00000529091.1,ENST00000435319.4,ENST00000527391.1,ENST00000606911.2,ENST00000524653.1	chr1	179853826:179853904:179858447:179858504:179870436:179870522,179853826:179853904:179858447:179858504:179869260:179869302,	179858448	179858504	179858506	179858506	Splice_Site	T	C	.
COAD	TCGA-A6-6780-01	TOR1AIP1	ENST00000528443.2,ENST00000531726.1,ENST00000271583.3	chr1	179853826:179853904:179858444:179858504:179869260:179869302,	179858445	179858504	179858506	179858506	Splice_Site	T	C	.
COAD	TCGA-G4-6586-01	TOX4	ENST00000448790.2,ENST00000262709.3,ENST00000405508.1,ENST00000455393.1	chr14	21960666:21961416:21963387:21963551:21964703:21964913,	21963388	21963551	21963387	21963387	Splice_Site	G	-	.
COAD	TCGA-CA-6719-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	A	.
COAD	TCGA-CM-6165-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	A	.
COAD	TCGA-DM-A285-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	T	.
COAD	TCGA-DM-A1D0-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577017	7577017	Splice_Site	A	C	.
COAD	TCGA-AZ-4615-01	TPD52L2	ENST00000217121.5,ENST00000352482.4,ENST00000346249.4	chr20	62500717:62500794:62505020:62505169:62514071:62514173,62500717:62500794:62505020:62505169:62507168:62507228,	62505021	62505169	62505171	62505171	Splice_Site	T	C	.
COAD	TCGA-AD-5900-01	TPP2	ENST00000376065.4,ENST00000376052.3	chr13	103296906:103297023:103297258:103297359:103298643:103298740,	103297259	103297359	103297360	103297360	Splice_Site	G	A	.
COAD	TCGA-AD-6964-01	TPP2	ENST00000376065.4,ENST00000376052.3	chr13	103296906:103297023:103297258:103297359:103298643:103298740,	103297259	103297359	103297360	103297360	Splice_Site	G	A	.
COAD	TCGA-CK-5916-01	TRIM6	ENST00000506134.1	chr11	5618035:5618144:5625763:5625859:5626566:5626797,	5625764	5625859	5625762	5625764	Splice_Site	AGG	-	.
COAD	TCGA-CM-4743-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14462863:14463034:14465653:14465749:14471426:14471575,	14465654	14465749	14465652	14465652	Splice_Site	A	C	.
COAD	TCGA-AD-5900-01	TRPM1	ENST00000558768.1,ENST00000560801.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31334153:31334446:31338406:31338436:31339313:31339454,	31338407	31338436	31338437	31338437	Splice_Site	C	T	.
COAD	TCGA-AZ-4315-01	TRPM4	ENST00000598502.1,ENST00000427978.2,ENST00000595519.1,ENST00000252826.5	chr19	49674841:49675026:49675265:49675365:49685834:49686179,49674834:49675026:49675265:49675365:49684605:49684718,	49675266	49675365	49675265	49675265	Splice_Site	G	A	.
COAD	TCGA-CA-6717-01	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651691	99651691	Splice_Site	A	C	.
COAD	TCGA-A6-6780-01	TSPAN8	ENST00000247829.3,ENST00000546561.1,ENST00000393330.2	chr12	71531935:71532010:71533490:71533628:71537930:71537993,	71533491	71533628	71533490	71533490	Splice_Site	C	T	.
COAD	TCGA-CK-5916-01	TTC24	ENST00000368237.3,ENST00000368236.3	chr1	156552833:156552962:156553129:156553242:156553588:156553687,	156553130	156553242	156553129	156553129	Splice_Site	G	A	.
COAD	TCGA-D5-6931-01	TXN	ENST00000374517.5	chr9	113013099:113013159:113013637:113013742:113018691:113018746,	113013638	113013742	113013637	113013637	Splice_Site	C	T	.
COAD	TCGA-G4-6320-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41860456:41860560:41861075:41861220:41862224:41862354,	41861076	41861220	41861222	41861222	Splice_Site	T	C	.
COAD	TCGA-AY-6197-01	UBAP2	ENST00000418786.2,ENST00000412543.1,ENST00000360802.1	chr9	33998784:33998862:34017047:34017187:34048822:34048870,33998784:33998862:34017047:34017187:34048875:34048927,	34017048	34017187	34017046	34017046	Splice_Site	A	G	.
COAD	TCGA-CM-6171-01	UBQLN1	ENST00000257468.7	chr9	86281264:86281348:86284099:86284242:86292641:86292876,86279944:86280060:86284099:86284242:86292641:86292876,	86284100	86284242	86284098	86284098	Splice_Site	A	G	.
COAD	TCGA-F4-6855-01	UCP2	ENST00000310473.3,ENST00000536983.1	chr11	73687867:73688062:73688930:73689141:73689297:73689522,	73688931	73689141	73688930	73688930	Splice_Site	C	T	.
COAD	TCGA-CK-5913-01	UGGT2	ENST00000491509.1,ENST00000376747.3	chr13	96519592:96519677:96529532:96529618:96529951:96530110,	96529533	96529618	96529620	96529620	Splice_Site	T	C	.
COAD	TCGA-A6-6781-01	UGT2B7	ENST00000305231.7	chr4	69972892:69972980:69973820:69974040:69978174:69978290,	69973821	69974040	69974041	69974041	Splice_Site	G	A	.
COAD	TCGA-CM-6165-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41012200:41012334:41022042:41022130:41025124:41025467,	41022043	41022130	41022042	41022042	Splice_Site	G	A	.
COAD	TCGA-CM-5862-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41084301:41084390:41088505:41088662:41088819:41089032,	41088506	41088662	41088663	41088663	Splice_Site	G	A	.
COAD	TCGA-AA-3663-01	UTRN	ENST00000367545.3	chr6	144800947:144801118:144803344:144803524:144806520:144806655,	144803345	144803524	144803526	144803526	Splice_Site	T	C	.
COAD	TCGA-CK-5916-01	VCAN	ENST00000265077.3,ENST00000513016.1,ENST00000502527.2,ENST00000343200.5,ENST00000512590.2,ENST00000342785.4	chr5	82868234:82868379:82875798:82875981:82876125:82876267,	82875799	82875981	82875982	82875982	Splice_Site	G	A	.
COAD	TCGA-AA-3510-01	VIM	ENST00000544301.1,ENST00000224237.5	chr10	17277844:17277888:17278292:17278378:17279228:17279285,	17278293	17278378	17278292	17278292	Splice_Site	G	T	.
COAD	TCGA-AD-6964-01	WDR17	ENST00000507824.2,ENST00000280190.4,ENST00000508596.1,ENST00000393643.2	chr4	177063133:177063220:177067145:177067310:177069283:177069486,	177067146	177067310	177067311	177067311	Splice_Site	G	A	.
COAD	TCGA-AA-3510-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272587	167272587	Splice_Site	C	T	.
COAD	TCGA-AA-3510-01	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272587	167272587	Splice_Site	C	T	.
COAD	TCGA-G4-6628-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67313166:67313361:67327829:67327985:67337052:67337192,	67327830	67327985	67327829	67327830	Splice_Site	-	T	.
COAD	TCGA-AD-6895-01	WT1	ENST00000452863.3,ENST00000530998.1,ENST00000332351.3,ENST00000379077.3,ENST00000448076.3,ENST00000379079.2	chr11	32413526:32413610:32414211:32414301:32417802:32417953,	32414212	32414301	32414302	32414302	Splice_Site	C	T	.
COAD	TCGA-D5-6927-01	XRCC3	ENST00000554913.1,ENST00000554774.1,ENST00000555055.1,ENST00000445556.1,ENST00000553264.1,ENST00000352127.7,ENST00000554811.1	chr14	104165469:104165516:104165700:104165913:104169509:104169574,	104165701	104165913	104165699	104165699	Splice_Site	A	G	.
COAD	TCGA-AA-3663-01	YIF1A	ENST00000376899.4,ENST00000528575.1,ENST00000431556.2,ENST00000359461.6,ENST00000376901.4	chr11	66055068:66055147:66055551:66055763:66056425:66056478,66055282:66055387:66055551:66055763:66056425:66056478,	66055552	66055763	66055550	66055550	Splice_Site	A	G	.
COAD	TCGA-A6-6653-01	YIPF2	ENST00000592646.1,ENST00000586748.1,ENST00000253031.2,ENST00000586575.1,ENST00000587943.1	chr19	11034171:11034353:11034508:11034675:11034751:11034793,	11034509	11034675	11034677	11034678	Splice_Site	-	G	.
COAD	TCGA-AA-3663-01	YIPF2	ENST00000592646.1,ENST00000586748.1,ENST00000253031.2,ENST00000586575.1,ENST00000587943.1	chr19	11034171:11034353:11034508:11034675:11034751:11034793,	11034509	11034675	11034677	11034678	Splice_Site	-	G	.
COAD	TCGA-AD-5900-01	ZCCHC14	ENST00000268616.4,ENST00000568020.1,ENST00000561928.1	chr16	87446660:87446801:87448019:87448147:87448881:87448973,	87448020	87448147	87448149	87448149	Splice_Site	T	A	.
COAD	TCGA-CA-6717-01	ZMYND12	ENST00000372565.3	chr1	42905526:42905696:42914137:42914309:42915588:42915730,	42914138	42914309	42914310	42914310	Splice_Site	C	A	.
COAD	TCGA-AA-3697-01	ZMYND8	ENST00000360911.3,ENST00000311275.7,ENST00000458360.2,ENST00000540497.1,ENST00000352431.2,ENST00000396281.4	chr20	45841286:45841370:45848908:45848975:45849964:45850125,45839405:45839542:45848908:45848975:45849964:45850108,	45848909	45848975	45848976	45848976	Splice_Site	C	G	.
COAD	TCGA-A6-5665-01	ZNF180	ENST00000590088.1,ENST00000592095.1,ENST00000221327.4,ENST00000586637.1,ENST00000591064.1,ENST00000592529.1	chr19	44982320:44982363:44983499:44983626:44988571:44988646,	44983500	44983626	44983628	44983629	Splice_Site	-	A	.
COAD	TCGA-A6-5665-01	ZNF280C	ENST00000370978.4	chrX	129354322:129354454:129361655:129361756:129362950:129363108,129360732:129360879:129361655:129361756:129362950:129363108,	129361656	129361756	129361654	129361654	Splice_Site	A	G	.
COAD	TCGA-G4-6628-01	ZNF280D	ENST00000267807.7,ENST00000558067.1,ENST00000560002.1,ENST00000396245.1,ENST00000559237.1,ENST00000560121.1,ENST00000558002.1,ENST00000559000.1	chr15	56968867:56969014:56969771:56969872:56970861:56971019,	56969772	56969872	56969771	56969771	Splice_Site	C	T	.
COAD	TCGA-AM-5821-01	ZNF419	ENST00000522346.1,ENST00000424930.2,ENST00000221735.7,ENST00000426954.2,ENST00000442920.2,ENST00000354197.4	chr19	58002838:58002965:58003480:58003579:58004223:58006048,	58003481	58003579	58003580	58003580	Splice_Site	A	G	.
COAD	TCGA-G4-6588-01	ZNF43	ENST00000354959.4	chr19	22000719:22000788:22001896:22002023:22025946:22026128,22000719:22000788:22001896:22002023:22018837:22018989,	22001897	22002023	22002025	22002026	Splice_Site	-	A	.
COAD	TCGA-AA-3510-01	ZSWIM7	ENST00000460315.1,ENST00000460252.1	chr17	15890579:15890682:15897070:15897092:15902819:15902948,15890579:15890682:15897070:15897092:15902973:15902997,15890579:15890682:15897070:15897092:15902832:15902903,15890579:15890682:15897070:15897092:15902816:15902902,	15897071	15897092	15897070	15897070	Splice_Site	C	T	.
COAD	TCGA-AA-3527-01	ECHS1	ENST00000368547.3	chr10	135175983:135176437:135178161:135178229:135179479:135179599,	135178162	135178229	135178161	135178161	Splice_Site	C	G	.
COAD	TCGA-AA-3558-01	PLA2G4A	ENST00000367466.3,ENST00000442353.2	chr1	186919788:186919860:186925233:186925476:186934540:186934725,	186925234	186925476	186925233	186925233	Splice_Site	G	C	.
COAD	TCGA-AA-3555-01	TGFB1	ENST00000221930.5,ENST00000597453.1	chr19	41848074:41848152:41850651:41850769:41854199:41854246,	41850652	41850769	41850770	41850770	Splice_Site	C	A	.
DLBC	TCGA-RQ-A68N-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6093353:6093527:6138192:6138295:6171826:6171941,	6138193	6138295	6138191	6138191	Splice_Site	A	G	.
DLBC	TCGA-FF-8062-01	ARHGEF26	ENST00000465817.1,ENST00000496710.1,ENST00000356448.4,ENST00000465093.1	chr3	153839730:153840864:153842198:153842238:153847362:153847508,	153842199	153842238	153842198	153842199	Splice_Site	-	A	.
DLBC	TCGA-FF-8062-01	RBMS3	ENST00000383766.2	chr3	29925652:29925699:29938869:29938966:29977576:29977687,	29938870	29938966	29938967	29938967	Splice_Site	G	T	.
DLBC	TCGA-G8-6914-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36691071:36691177:36692303:36692386:36693813:36693883,	36692304	36692386	36692303	36692303	Splice_Site	G	T	.
DLBC	TCGA-G8-6914-01	AHCTF1	ENST00000470300.1	chr1	247006003:247006078:247007096:247007230:247012916:247013151,247004263:247004300:247007096:247007230:247012916:247013151,	247007097	247007230	247007232	247007232	Splice_Site	T	A	.
DLBC	TCGA-G8-6914-01	NFYC	ENST00000308733.5,ENST00000425457.2	chr1	41232267:41232375:41232589:41232646:41235027:41235087,	41232590	41232646	41232588	41232588	Splice_Site	A	G	.
DLBC	TCGA-GR-A4D4-01	CARS2	ENST00000542126.1,ENST00000542709.1,ENST00000257347.4,ENST00000541443.1,ENST00000540629.1,ENST00000535398.1	chr13	111340138:111340173:111340293:111340365:111353784:111353902,	111340294	111340365	111340366	111340366	Splice_Site	C	A	.
DLBC	TCGA-GR-A4D4-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574035	7574035	Splice_Site	T	C	.
DLBC	TCGA-GR-A4D4-01	FAM161A	ENST00000404929.1	chr2	62063191:62063244:62065672:62065840:62066555:62066659,	62065673	62065840	62065671	62065671	Splice_Site	A	G	.
DLBC	TCGA-GR-A4D4-01	FAS	ENST00000494410.1	chr10	90770295:90770357:90770509:90770572:90771755:90771838,90770295:90770357:90770509:90770572:90773099:90773124,	90770510	90770572	90770574	90770574	Splice_Site	T	A	.
DLBC	TCGA-FA-A82F-01	INPP4B	ENST00000308502.4,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000508116.1,ENST00000510812.1,ENST00000262992.4	chr4	143226610:143226690:143235864:143235915:143324090:143324162,	143235865	143235915	143235864	143235864	Splice_Site	C	T	.
DLBC	TCGA-FA-A4XK-01	RECQL5	ENST00000420326.2,ENST00000582464.1,ENST00000578201.1,ENST00000423245.2,ENST00000340830.5,ENST00000584999.1,ENST00000317905.5	chr17	73647265:73647345:73654377:73654540:73657034:73657068,	73654378	73654540	73654377	73654377	Splice_Site	C	T	.
DLBC	TCGA-FM-8000-01	FAIM	ENST00000479848.1,ENST00000360570.3,ENST00000338446.4,ENST00000464668.1,ENST00000393035.2,ENST00000393034.2,ENST00000470889.1	chr3	138340248:138340381:138341029:138341258:138347948:138347993,	138341030	138341258	138341028	138341028	Splice_Site	A	G	.
DLBC	TCGA-FM-8000-01	FAIM	ENST00000491175.1	chr3	138340248:138340381:138341029:138341234:138347948:138347993,	138341030	138341234	138341028	138341028	Splice_Site	A	G	.
DLBC	TCGA-G8-6324-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67313166:67313361:67327829:67327985:67337052:67337192,	67327830	67327985	67327986	67327986	Splice_Site	C	G	.
DLBC	TCGA-G8-6324-01	DTNBP1	ENST00000506844.1,ENST00000338950.5,ENST00000344537.5,ENST00000511762.2,ENST00000510395.1	chr6	15524770:15524900:15533470:15533626:15593289:15593312,	15533471	15533626	15533469	15533469	Splice_Site	G	A	.
DLBC	TCGA-G8-6324-01	ARAP1	ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000393609.3	chr11	72399499:72399582:72403797:72403830:72404369:72404400,	72403798	72403830	72403832	72403832	Splice_Site	T	C	.
DLBC	TCGA-G8-6324-01	VWDE	ENST00000452576.2,ENST00000275358.3	chr7	12412602:12412873:12414314:12414388:12414635:12414853,	12414315	12414388	12414314	12414314	Splice_Site	C	G	.
DLBC	TCGA-G8-6909-01	ADAM32	ENST00000379907.4	chr8	39027434:39027516:39044427:39044564:39068662:39068843,	39044428	39044564	39044565	39044565	Splice_Site	G	A	.
DLBC	TCGA-G8-6909-01	ARHGEF1	ENST00000595723.1	chr19	42408411:42408535:42409100:42409188:42409326:42409413,42408367:42408535:42409100:42409188:42409911:42409979,	42409101	42409188	42409189	42409189	Splice_Site	G	A	.
DLBC	TCGA-G8-6909-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245986	26245986	Splice_Site	A	T	.
DLBC	TCGA-G8-6909-01	ZFP36L1	ENST00000553375.1	chr14	69257049:69257209:69259598:69259787:69262791:69262931,	69259599	69259787	69259598	69259598	Splice_Site	C	T	.
DLBC	TCGA-GS-A9TQ-01	PLCB1	ENST00000378641.3,ENST00000338037.6,ENST00000378637.2,ENST00000404098.2	chr20	8130940:8131018:8352028:8352097:8608940:8609078,	8352029	8352097	8352099	8352100	Splice_Site	-	AGGATCCC	.
DLBC	TCGA-GS-A9TQ-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000354456.3,ENST00000427266.1,ENST00000512292.1,ENST00000507377.1	chr4	129028293:129028468:129035724:129035897:129042980:129043343,	129035725	129035897	129035899	129035899	Splice_Site	T	C	.
DLBC	TCGA-FF-A7CR-01	IGLL5	ENST00000532223.2	chr22	23230008:23230439:23235876:23235998:23237554:23237565,	23235877	23235998	23235999	23235999	Splice_Site	G	C	.
DLBC	TCGA-FF-A7CR-01	PCSK2	ENST00000262545.2,ENST00000377899.1	chr20	17207974:17208127:17240884:17240989:17338971:17339085,	17240885	17240989	17240884	17240884	Splice_Site	G	T	.
DLBC	TCGA-GR-A4D9-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245986	26245986	Splice_Site	A	T	.
DLBC	TCGA-FF-8042-01	PAX5	ENST00000522003.1,ENST00000414447.1,ENST00000377853.2,ENST00000358127.4,ENST00000520281.1	chr9	36846839:36846926:36923351:36923481:36966545:36966721,36882000:36882102:36923351:36923481:36966545:36966586,	36923352	36923481	36923482	36923482	Splice_Site	C	T	.
DLBC	TCGA-FF-8041-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721960	101721960	Splice_Site	C	A	.
DLBC	TCGA-GR-7353-01	WWC2	ENST00000403733.3,ENST00000427431.1,ENST00000448232.2,ENST00000504005.1,ENST00000513834.1	chr4	184190123:184190316:184192232:184192394:184201928:184202050,	184192233	184192394	184192231	184192231	Splice_Site	A	G	.
DLBC	TCGA-VB-A8QN-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20107645	20107645	Splice_Site	G	T	.
DLBC	TCGA-VB-A8QN-01	DIXDC1	ENST00000530411.1,ENST00000315253.5	chr11	111848032:111848519:111851461:111851574:111853063:111853104,	111851462	111851574	111851576	111851576	Splice_Site	T	C	.
DLBC	TCGA-FF-A7CX-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525843:75525968:75526107:75526299:75526517:75526555,	75526108	75526299	75526107	75526107	Splice_Site	G	A	.
DLBC	TCGA-FF-A7CX-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000418559.1	chr2	183623886:183624034:183627408:183627528:183640042:183640147,	183627409	183627528	183627529	183627529	Splice_Site	G	A	.
DLBC	TCGA-GR-7351-01	IRF1	ENST00000437654.1	chr5	131822653:131822822:131825083:131825175:131826236:131826418,131823617:131823717:131825083:131825175:131826236:131826418,	131825084	131825175	131825083	131825083	Splice_Site	C	A	.
DLBC	TCGA-GR-7351-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000444559.1,ENST00000472146.1	chr2	145187477:145187593:145274844:145274986:145277505:145277569,	145274845	145274986	145274844	145274844	Splice_Site	C	T	.
DLBC	TCGA-G8-6325-01	CLEC4M	ENST00000248228.4,ENST00000598879.1,ENST00000597522.1,ENST00000357361.2	chr19	7828152:7828198:7828278:7828362:7830523:7830679,7828152:7828198:7828278:7828362:7830070:7830135,	7828279	7828362	7828277	7828277	Splice_Site	A	G	.
DLBC	TCGA-G8-6325-01	BTBD16	ENST00000260723.4	chr10	124034554:124034614:124036305:124036454:124043365:124043439,	124036306	124036454	124036305	124036305	Splice_Site	G	T	.
DLBC	TCGA-FF-8043-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16149948:16150152:16162012:16162159:16165498:16165586,	16162013	16162159	16162160	16162160	Splice_Site	G	A	.
DLBC	TCGA-FA-A7Q1-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76829714:76829823:76845303:76845410:76849165:76849319,	76845304	76845410	76845412	76845413	Splice_Site	-	A	.
DLBC	TCGA-FA-A7Q1-01	FAS	ENST00000488877.1,ENST00000484444.1,ENST00000479522.1,ENST00000492756.1,ENST00000357339.2,ENST00000313771.5,ENST00000355740.2,ENST00000494799.1	chr10	90771755:90771838:90773099:90773124:90773875:90773934,	90773100	90773124	90773125	90773125	Splice_Site	G	C	.
DLBC	TCGA-FA-A7Q1-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96063853:96063922:96076482:96076598:96077273:96077487,	96076483	96076598	96076600	96076600	Splice_Site	T	C	.
DLBC	TCGA-GS-A9TW-01	FAF2	ENST00000261942.6,ENST00000510446.1	chr5	175906188:175906257:175913355:175913490:175915951:175916028,	175913356	175913490	175913491	175913491	Splice_Site	G	A	.
DLBC	TCGA-FF-8047-01	SNX13	ENST00000428135.3,ENST00000409389.1,ENST00000444712.1,ENST00000409076.2	chr7	17873674:17873807:17874383:17874488:17879429:17879623,	17874384	17874488	17874490	17874490	Splice_Site	T	C	.
DLBC	TCGA-FF-8047-01	ARMC8	ENST00000393058.3,ENST00000461822.1,ENST00000469044.1,ENST00000481646.1,ENST00000491704.1,ENST00000460495.1,ENST00000485396.1,ENST00000466762.1,ENST00000538260.1	chr3	138007889:138007962:138009387:138009481:138014700:138014775,	138009388	138009481	138009387	138009387	Splice_Site	G	A	.
DLBC	TCGA-GS-A9TZ-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111654325:111654570:111656671:111656813:111665127:111665246,	111656672	111656813	111656671	111656671	Splice_Site	C	T	.
DLBC	TCGA-GS-A9TZ-01	DYRK1B	ENST00000430012.2	chr19	40316819:40316926:40317311:40317507:40317924:40318065,	40317312	40317507	40317311	40317311	Splice_Site	C	T	.
DLBC	TCGA-GS-A9TZ-01	DYRK1B	ENST00000593685.1,ENST00000323039.5	chr19	40316819:40316926:40317311:40317627:40317924:40318065,	40317312	40317627	40317311	40317311	Splice_Site	C	T	.
DLBC	TCGA-GS-A9TZ-01	ACTB	ENST00000477812.1	chr7	5568323:5568350:5568791:5569294:5570154:5570235,	5568792	5569294	5569295	5569295	Splice_Site	C	T	.
DLBC	TCGA-GS-A9TZ-01	ACTB	ENST00000462494.1,ENST00000425660.1,ENST00000331789.5	chr7	5568912:5569031:5569165:5569294:5570154:5570214,	5569166	5569294	5569295	5569295	Splice_Site	C	T	.
DLBC	TCGA-FF-8061-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245986	26245986	Splice_Site	A	T	.
DLBC	TCGA-RQ-AAAT-01	CEP112	ENST00000535342.2,ENST00000583358.1,ENST00000392769.2	chr17	64066032:64066119:64125863:64125941:64128787:64128881,64092702:64092750:64125863:64125941:64128787:64128881,	64125864	64125941	64125942	64125942	Splice_Site	C	A	.
DLBC	TCGA-RQ-AAAT-01	APMAP	ENST00000451442.1,ENST00000217456.2,ENST00000447138.1	chr20	24954280:24954373:24959402:24959518:24964538:24964655,	24959403	24959518	24959519	24959519	Splice_Site	C	T	.
DLBC	TCGA-FA-8693-01	SFTPD	ENST00000444384.3,ENST00000372292.3	chr10	81701709:81701826:81702143:81702260:81702518:81702626,	81702144	81702260	81702261	81702261	Splice_Site	C	A	.
DLBC	TCGA-FA-8693-01	PDCL3	ENST00000264254.6	chr2	101186039:101186183:101188051:101188260:101192815:101193197,	101188052	101188260	101188050	101188050	Splice_Site	A	G	.
DLBC	TCGA-FA-8693-01	FGGY	ENST00000371218.4,ENST00000371212.1,ENST00000303721.7,ENST00000471169.1,ENST00000472783.1,ENST00000371210.1	chr1	60132954:60133075:60223602:60223664:60228174:60228216,60139710:60139805:60223602:60223664:60228174:60228216,	60223603	60223664	60223665	60223665	Splice_Site	G	T	.
DLBC	TCGA-FA-8693-01	ST7L	ENST00000480988.1,ENST00000497457.1	chr1	113143415:113143470:113153462:113153625:113161530:113161563,	113153463	113153625	113153627	113153627	Splice_Site	T	C	.
ESCA	TCGA-L5-A88Y-01	RIMS2	ENST00000408894.2	chr8	105027651:105027684:105053556:105053586:105080739:105080840,	105053557	105053586	105053555	105053555	Splice_Site	A	C	p.E863_splice
ESCA	TCGA-IG-A3YC-01	ALDH2	ENST00000549106.1	chr12	112237709:112237867:112241662:112241777:112247346:112247434,112235881:112236046:112241662:112241777:112247346:112247434,	112241663	112241777	112241777	112241778	Splice_Site	TG	-	p.507_splice
ESCA	TCGA-L5-A4ON-01	WASF3	ENST00000335327.5	chr13	27246008:27246126:27250685:27250861:27255190:27255457,	27250686	27250861	27250861	27250862	Splice_Site	-	GT	p.S239_splice
ESCA	TCGA-L5-A8NT-01	PSMD3	ENST00000264639.4	chr17	38152435:38152591:38153582:38153633:38153756:38153864,	38153583	38153633	38153633	38153634	Splice_Site	-	GTAA	p.E509_splice
ESCA	TCGA-R6-A6Y0-01	AACS	ENST00000536752.1,ENST00000261686.6,ENST00000418937.2	chr12	125549986:125550263:125558421:125558525:125561036:125561157,	125558422	125558525	125558421	125558421	Splice_Site	G	T	e2-1
ESCA	TCGA-IC-A6RE-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16101672:16101849:16103632:16103758:16108347:16108485,	16103633	16103758	16103632	16103632	Splice_Site	G	T	e3-1
ESCA	TCGA-VR-A8EY-01	ABHD16A	ENST00000375842.4,ENST00000440843.2,ENST00000395952.3,ENST00000492084.1,ENST00000538874.1,ENST00000495769.1,ENST00000482224.1,ENST00000468037.1,ENST00000498420.1	chr6	31661135:31661209:31664724:31664810:31668718:31668805,	31664725	31664810	31664812	31664812	Splice_Site	T	G	e5-2
ESCA	TCGA-VR-A8EY-01	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33549311:33549488:33561131:33561284:33576158:33577265,	33561132	33561284	33561131	33561131	Splice_Site	C	T	e20+1
ESCA	TCGA-IC-A6RE-01	ADAMTS14	ENST00000373207.1,ENST00000373208.1	chr10	72513555:72513763:72517717:72517847:72517930:72518041,	72517718	72517847	72517717	72517717	Splice_Site	G	C	e20-1
ESCA	TCGA-L5-A8NV-01	ADCY10	ENST00000367848.1,ENST00000367851.4	chr1	167871253:167871292:167873124:167873229:167874230:167874436,	167873125	167873229	167873231	167873231	Splice_Site	T	C	e2-2
ESCA	TCGA-IG-A5B8-01	ADHFE1	ENST00000419955.1,ENST00000431959.1	chr8	67352396:67352434:67355032:67355079:67356601:67356655,67344747:67344810:67355032:67355079:67356601:67356655,	67355033	67355079	67355081	67355081	Splice_Site	T	C	e3+2
ESCA	TCGA-R6-A8W8-01	AHCY	ENST00000538132.1,ENST00000480653.1,ENST00000217426.2	chr20	32868832:32868971:32873245:32873440:32878137:32878255,	32873246	32873440	32873245	32873245	Splice_Site	C	G	e9+1
ESCA	TCGA-JY-A6FB-01	AHSG	ENST00000478441.1,ENST00000273784.5	chr3	186330873:186331143:186333473:186333584:186334231:186334316,	186333474	186333584	186333473	186333473	Splice_Site	G	T	e2-1
ESCA	TCGA-JY-A6FG-01	AMT	ENST00000546031.1,ENST00000493046.1,ENST00000399379.2	chr3	49458924:49459005:49459414:49459482:49459871:49460118,49458924:49459005:49459414:49459482:49459793:49459875,	49459415	49459482	49459414	49459414	Splice_Site	C	T	e0+1
ESCA	TCGA-VR-A8EO-01	ANKLE2	ENST00000439231.2	chr12	133306818:133306856:133310581:133310657:133310970:133311046,	133310582	133310657	133310659	133310660	Splice_Site	-	A	e11-2
ESCA	TCGA-L5-A4OG-01	ANKRD36C	ENST00000531153.1,ENST00000534304.1,ENST00000419039.2,ENST00000456556.1,ENST00000420871.2,ENST00000295246.5	chr2	96555713:96555742:96557412:96557485:96557579:96557608,	96557413	96557485	96557486	96557486	Splice_Site	C	G	e46-1
ESCA	TCGA-LN-A5U7-01	ANKUB1	ENST00000484019.1	chr3	149488346:149488461:149498107:149498242:149508567:149508683,	149498108	149498242	149498106	149498106	Splice_Site	A	G	e2+2
ESCA	TCGA-L5-A8NM-01	AP1G1	ENST00000423132.2	chr16	71799391:71799487:71803430:71803439:71803525:71803602,	71803431	71803439	71803440	71803440	Splice_Site	A	-	e6-1
ESCA	TCGA-ZR-A9CJ-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205713	115205713	Splice_Site	G	T	e3-1
ESCA	TCGA-L5-A893-01	ARNTL	ENST00000529388.1,ENST00000533520.1,ENST00000396441.3,ENST00000389708.3,ENST00000361003.4,ENST00000403290.1,ENST00000389707.4,ENST00000527998.1	chr11	13375847:13375995:13378285:13378324:13378601:13378643,	13378286	13378324	13378285	13378285	Splice_Site	G	T	e2-1
ESCA	TCGA-VR-A8ER-01	ARPC4	ENST00000440787.1	chr3	9843344:9843440:9845219:9845391:9845526:9845697,	9845220	9845391	9845219	9845219	Splice_Site	G	A	e5-1
ESCA	TCGA-LN-A9FP-01	ARRB2	ENST00000571428.1,ENST00000570739.1	chr17	4614018:4614039:4619267:4619328:4619441:4619486,4614018:4614039:4619267:4619328:4619706:4619810,	4619268	4619328	4619267	4619267	Splice_Site	G	C	e3-1
ESCA	TCGA-JY-A6FH-01	ARSA	ENST00000216124.5,ENST00000395619.3,ENST00000547307.1,ENST00000453344.2,ENST00000395621.3,ENST00000356098.5,ENST00000547805.1	chr22	51065018:51065188:51065261:51065480:51065593:51065834,	51065262	51065480	51065261	51065261	Splice_Site	C	T	e3+1
ESCA	TCGA-LN-A8I1-01	ASCC1	ENST00000530394.1	chr10	73857011:73857208:73862091:73862170:73862607:73862725,73857011:73857208:73862091:73862170:73887839:73887925,	73862092	73862170	73862091	73862091	Splice_Site	C	A	e11+1
ESCA	TCGA-R6-A6XQ-01	ATAD5	ENST00000321990.4	chr17	29206440:29206505:29214209:29214390:29219624:29219806,	29214210	29214390	29214209	29214209	Splice_Site	G	T	e19-1
ESCA	TCGA-2H-A9GK-01	ATG7	ENST00000354449.3,ENST00000446450.2,ENST00000354956.5	chr3	11389350:11389509:11399891:11400086:11402054:11402258,	11399892	11400086	11399890	11399890	Splice_Site	A	G	e12-2
ESCA	TCGA-L5-A8NI-01	ATMIN	ENST00000564241.1,ENST00000566488.1,ENST00000299575.4	chr16	81074960:81075086:81075885:81076085:81076765:81078779,	81075886	81076085	81076086	81076086	Splice_Site	G	A	e3+1
ESCA	TCGA-L5-A4OT-01	ATP6V1H	ENST00000396774.2,ENST00000520188.1,ENST00000521377.1,ENST00000519588.1,ENST00000359530.2,ENST00000355221.3	chr8	54729976:54730090:54742003:54742093:54745543:54745569,	54742004	54742093	54742095	54742096	Splice_Site	-	A	e3-2
ESCA	TCGA-R6-A6DQ-01	B4GALT6	ENST00000237019.7,ENST00000306851.5	chr18	29210921:29211109:29218606:29218723:29225317:29225442,	29218607	29218723	29218605	29218605	Splice_Site	A	G	e5+2
ESCA	TCGA-V5-AASV-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80880998	80880998	Splice_Site	G	A	e6-1
ESCA	TCGA-IG-A625-01	BUB1	ENST00000535254.1,ENST00000302759.6	chr2	111398610:111398782:111398883:111399041:111399218:111399266,	111398884	111399041	111398882	111398882	Splice_Site	G	T	e22+2
ESCA	TCGA-L5-A4OR-01	C20orf194	ENST00000252032.9,ENST00000453730.2	chr20	3297369:3297440:3298935:3299047:3302863:3302909,	3298936	3299047	3299048	3299048	Splice_Site	C	T	e17-1
ESCA	TCGA-LN-A9FQ-01	C2orf76	ENST00000334816.7,ENST00000409466.2,ENST00000409877.1,ENST00000409523.1	chr2	120060019:120060124:120069197:120069279:120075041:120075079,	120069198	120069279	120069281	120069282	Splice_Site	-	A	e4-2
ESCA	TCGA-VR-A8ET-01	C4orf47	ENST00000508698.1,ENST00000378850.4	chr4	186361693:186361873:186366117:186366284:186370749:186370822,	186366118	186366284	186366117	186366117	Splice_Site	G	T	e6-1
ESCA	TCGA-L5-A88Z-01	C5orf17	ENST00000512559.1	chr5	23977898:23978031:23980045:23980950:24177945:24178372,	23980046	23980950	23980951	23980951	Splice_Site	G	A	e4+1
ESCA	TCGA-LN-A49M-01	C5orf58	ENST00000524171.1,ENST00000593851.1	chr5	169659949:169660011:169661118:169661202:169661980:169662074,	169661119	169661202	169661118	169661119	Splice_Site	-	T	e1-1
ESCA	TCGA-L5-A893-01	CACNA1C	ENST00000347598.4,ENST00000399606.1	chr12	2705039:2705169:2706395:2706455:2711019:2711126,2705039:2705169:2706395:2706455:2706602:2706662,	2706396	2706455	2706457	2706457	Splice_Site	T	G	e21+2
ESCA	TCGA-L5-A4OR-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766990	53766990	Splice_Site	G	A	e20+1
ESCA	TCGA-V5-A7RC-01	CARF	ENST00000427712.1	chr2	203806596:203806703:203807485:203807690:203817281:203817343,	203807486	203807690	203807485	203807485	Splice_Site	G	T	e2-1
ESCA	TCGA-LN-A4A5-01	CCDC62	ENST00000392441.4,ENST00000341952.4,ENST00000392440.2,ENST00000537566.1,ENST00000253079.6	chr12	123281853:123281942:123282631:123282747:123285670:123286399,	123282632	123282747	123282748	123282748	Splice_Site	G	T	e8+1
ESCA	TCGA-IG-A8O2-01	CCM2	ENST00000477605.1,ENST00000475551.1,ENST00000488727.1,ENST00000381112.3,ENST00000544363.1,ENST00000258781.6,ENST00000541586.1,ENST00000474617.1,ENST00000461377.1	chr7	45113058:45113170:45113868:45114007:45115375:45115951,	45113869	45114007	45113868	45113868	Splice_Site	G	T	e9-1
ESCA	TCGA-LN-A49U-01	CCNY	ENST00000339497.5,ENST00000374706.1,ENST00000265375.9,ENST00000492478.1,ENST00000493157.2,ENST00000374704.4	chr10	35790428:35790463:35805450:35805551:35814891:35814927,	35805451	35805551	35805450	35805450	Splice_Site	G	A	e4-1
ESCA	TCGA-JY-A6FH-01	CDK5RAP2	ENST00000480112.1,ENST00000473282.2	chr9	123220727:123220900:123222849:123223025:123230137:123230275,	123222850	123223025	123223027	123223027	Splice_Site	T	-	e19-2
ESCA	TCGA-L5-A4OI-01	CDK5RAP2	ENST00000480112.1,ENST00000473282.2	chr9	123220727:123220900:123222849:123223025:123230137:123230275,	123222850	123223025	123223027	123223028	Splice_Site	TT	-	e19-2
ESCA	TCGA-M9-A5M8-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970899	21970899	Splice_Site	A	G	e2+2
ESCA	TCGA-LN-A8I1-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971208	21971208	Splice_Site	C	T	e2-1
ESCA	TCGA-LN-A8I1-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971208	21971208	Splice_Site	C	T	e2-1
ESCA	TCGA-IG-A51D-01	CEP104	ENST00000494653.1,ENST00000378230.3	chr1	3753855:3754083:3755527:3755683:3756171:3756340,	3755528	3755683	3755527	3755527	Splice_Site	C	A	e7+1
ESCA	TCGA-LN-A7HX-01	CHCHD6	ENST00000508789.1,ENST00000503119.1,ENST00000290913.3	chr3	126571489:126571573:126633522:126633593:126676258:126676394,	126633523	126633593	126633522	126633522	Splice_Site	G	T	e6-1
ESCA	TCGA-L7-A56G-01	CIAO1	ENST00000272402.2	chr2	96933573:96933662:96934194:96935093:96936848:96937383,	96934195	96935093	96934194	96934194	Splice_Site	G	T	e5-1
ESCA	TCGA-L5-A43M-01	CKAP5	ENST00000533413.1,ENST00000526876.2,ENST00000529230.1,ENST00000415402.1	chr11	46775038:46775047:46776437:46776617:46780472:46780593,	46776438	46776617	46776437	46776437	Splice_Site	C	A	e35+1
ESCA	TCGA-L5-A43M-01	CKAP5	ENST00000527333.1	chr11	46775038:46775047:46776437:46776533:46780472:46780593,	46776438	46776533	46776437	46776437	Splice_Site	C	A	e35+1
ESCA	TCGA-2H-A9GR-01	CLEC7A	ENST00000534609.1	chr12	10277895:10278047:10279169:10280444:10282578:10282681,	10279170	10280444	10280446	10280446	Splice_Site	T	A	e2-2
ESCA	TCGA-2H-A9GR-01	CLEC7A	ENST00000528799.1,ENST00000298523.5	chr12	10277895:10278047:10280345:10280444:10282578:10282681,	10280346	10280444	10280446	10280446	Splice_Site	T	A	e2-2
ESCA	TCGA-L5-A8NU-01	CMC1	ENST00000423894.1	chr3	28304781:28304871:28357823:28357914:28360999:28361232,28283108:28283303:28357823:28357914:28360999:28361232,	28357824	28357914	28357823	28357823	Splice_Site	G	C	e3-1
ESCA	TCGA-LN-A4A4-01	CNN2	ENST00000566695.1,ENST00000568865.1,ENST00000263097.4	chr19	1032561:1032662:1036128:1036245:1036414:1036548,1032557:1032695:1036128:1036245:1036414:1036548,	1036129	1036245	1036246	1036246	Splice_Site	G	A	e5+1
ESCA	TCGA-LN-A4A4-01	CNN2	ENST00000562958.2	chr19	1032557:1032695:1036065:1036245:1036414:1036548,	1036066	1036245	1036246	1036246	Splice_Site	G	A	e5+1
ESCA	TCGA-2H-A9GO-01	COG5	ENST00000393603.2,ENST00000297135.3	chr7	106877099:106877132:106888840:106888944:106897176:106897239,	106888841	106888944	106888946	106888947	Splice_Site	-	A	e17-2
ESCA	TCGA-L5-A4OH-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189860417:189860516:189860850:189860904:189861123:189861222,	189860851	189860904	189860905	189860905	Splice_Site	G	A	e23+1
ESCA	TCGA-L5-A8NQ-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47541469:47541532:47542021:47542072:47542409:47542445,	47542022	47542072	47542073	47542073	Splice_Site	G	A	e18+1
ESCA	TCGA-LN-A9FP-01	CRB1	ENST00000538660.1,ENST00000484075.1,ENST00000535699.1,ENST00000543483.1,ENST00000475659.1,ENST00000367400.3	chr1	197313410:197313606:197316469:197316609:197325960:197326143,	197316470	197316609	197316469	197316469	Splice_Site	G	T	e4-1
ESCA	TCGA-LN-A8I0-01	CSPP1	ENST00000521324.1,ENST00000521168.1,ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68089914:68089961:68092097:68092161:68102884:68102994,	68092098	68092161	68092096	68092096	Splice_Site	A	G	e26-2
ESCA	TCGA-R6-A6L6-01	CTNNA1	ENST00000518825.1,ENST00000520158.1,ENST00000519309.1,ENST00000302763.7	chr5	138118865:138119061:138145726:138145893:138147871:138147991,	138145727	138145893	138145894	138145894	Splice_Site	G	T	e3+1
ESCA	TCGA-L5-A8NL-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148464710:148464841:148480874:148480982:148481062:148481169,	148480875	148480982	148480983	148480983	Splice_Site	G	T	e9+1
ESCA	TCGA-IG-A97H-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927734	57927734	Splice_Site	A	T	e9+2
ESCA	TCGA-VR-A8EU-01	DDX1	ENST00000381341.2,ENST00000233084.3	chr2	15753347:15753408:15757367:15757466:15758304:15758394,	15757368	15757466	15757366	15757366	Splice_Site	A	G	e15-2
ESCA	TCGA-V5-A7RC-01	DEF6	ENST00000316637.5	chr6	35280078:35280315:35280402:35280549:35285667:35285776,	35280403	35280549	35280402	35280402	Splice_Site	G	T	e5-1
ESCA	TCGA-VR-A8EQ-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000380432.2,ENST00000602925.1	chr9	19316618:19316837:19324359:19324505:19325936:19325972,	19324360	19324505	19324506	19324506	Splice_Site	G	T	e12+1
ESCA	TCGA-LN-A49R-01	DGCR2	ENST00000537045.1,ENST00000263196.7	chr22	19050714:19050791:19052360:19052580:19055612:19055738,	19052361	19052580	19052582	19052582	Splice_Site	T	C	e4-2
ESCA	TCGA-L5-A4OF-01	DHRS4	ENST00000313250.5	chr14	24429119:24429212:24434970:24435041:24435140:24435192,	24434971	24435041	24435043	24435043	Splice_Site	T	C	e4+2
ESCA	TCGA-VR-A8EO-01	DNAAF1	ENST00000567918.1,ENST00000563093.1,ENST00000378553.5,ENST00000570298.1	chr16	84178921:84179169:84182611:84182747:84183855:84183947,	84182612	84182747	84182611	84182611	Splice_Site	G	T	e2-1
ESCA	TCGA-IG-A3YB-01	DNAH10	ENST00000497783.2,ENST00000409039.3	chr12	124363810:124363904:124364180:124364348:124366171:124366360,	124364181	124364348	124364180	124364180	Splice_Site	G	T	e49-1
ESCA	TCGA-Z6-A9VB-01	DNAH11	ENST00000409508.3	chr7	21655826:21655910:21657236:21657395:21658717:21658840,	21657237	21657395	21657235	21657235	Splice_Site	A	G	e23-2
ESCA	TCGA-L5-A43J-01	DNAJC19	ENST00000478723.1,ENST00000479269.1,ENST00000486355.1,ENST00000382564.2	chr3	180703713:180703784:180705810:180705884:180705965:180706017,180704785:180704810:180705810:180705884:180707387:180707491,180704785:180704810:180705810:180705884:180705965:180706017,	180705811	180705884	180705810	180705810	Splice_Site	C	T	e3+1
ESCA	TCGA-LN-A49W-01	DPYD	ENST00000370192.3	chr1	97564044:97564188:97658624:97658804:97700407:97700550,	97658625	97658804	97658623	97658623	Splice_Site	A	C	e20+2
ESCA	TCGA-JY-A6F8-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150120	27150120	Splice_Site	G	T	e3-1
ESCA	TCGA-L5-A8NI-01	DRD2	ENST00000362072.3,ENST00000544518.1,ENST00000542968.1	chr11	113283277:113283605:113285096:113285183:113286142:113286333,	113285097	113285183	113285184	113285184	Splice_Site	C	A	e5-1
ESCA	TCGA-VR-A8EW-01	DRG1	ENST00000433341.1,ENST00000331457.4	chr22	31796605:31796729:31799014:31799190:31806997:31807046,	31799015	31799190	31799191	31799191	Splice_Site	G	A	e3+1
ESCA	TCGA-R6-A8WG-01	DYNC1H1	ENST00000360184.4,ENST00000556791.1,ENST00000553423.1	chr14	102500473:102500525:102500661:102500789:102502825:102502979,	102500662	102500789	102500661	102500661	Splice_Site	G	A	e56-1
ESCA	TCGA-LN-A49L-01	DYNC1I1	ENST00000324972.6,ENST00000457059.1,ENST00000447467.2	chr7	95442591:95442649:95457368:95457428:95499194:95499310,	95457369	95457428	95457368	95457368	Splice_Site	G	A	e4-1
ESCA	TCGA-IG-A51D-01	EDEM2	ENST00000542871.1	chr20	33714053:33714178:33719444:33719586:33721907:33721958,33714053:33714178:33719444:33719586:33722540:33722752,33714053:33714178:33719444:33719586:33730175:33730281,	33719445	33719586	33719587	33719587	Splice_Site	C	T	e7-1
ESCA	TCGA-L5-A8NS-01	EFCAB10	ENST00000490493.1	chr7	105209649:105209737:105209853:105210018:105221804:105221933,105209649:105209737:105209853:105210018:105231751:105231838,	105209854	105210018	105210019	105210019	Splice_Site	C	T	e2-1
ESCA	TCGA-2H-A9GM-01	ENPP3	ENST00000470930.1	chr6	131971166:131971289:131973681:131973807:131979462:131979560,	131973682	131973807	131973681	131973681	Splice_Site	G	T	e4-1
ESCA	TCGA-IG-A625-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944321:139944441:139944735:139944990:139945353:139945503,	139944736	139944990	139944734	139944734	Splice_Site	A	G	e6+2
ESCA	TCGA-JY-A6FG-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29362337:29362435:29365765:29365938:29379615:29379824,	29365766	29365938	29365939	29365939	Splice_Site	G	A	e10+1
ESCA	TCGA-VR-AA4D-01	EPS8L3	ENST00000361965.4,ENST00000369805.3	chr1	110294380:110294404:110294616:110294815:110295307:110295342,	110294617	110294815	110294817	110294817	Splice_Site	T	G	e14-2
ESCA	TCGA-L5-A4OI-01	ERCC6	ENST00000355832.5,ENST00000542458.1	chr10	50682072:50682288:50684260:50684356:50686399:50686516,	50684261	50684356	50684358	50684358	Splice_Site	T	C	e11-2
ESCA	TCGA-IG-A3I8-01	FAM182B	ENST00000478164.1,ENST00000376404.2	chr20	25744101:25744340:25745529:25745637:25755745:25755906,	25745530	25745637	25745639	25745640	Splice_Site	-	AGAG	e2-2
ESCA	TCGA-R6-A8WC-01	FAM19A1	ENST00000478136.1,ENST00000496687.1	chr3	68466432:68466570:68587906:68588031:68593636:68594772,	68587907	68588031	68588032	68588032	Splice_Site	G	T	e3+1
ESCA	TCGA-2H-A9GM-01	FARP2	ENST00000545004.1,ENST00000373287.4	chr2	242295713:242295803:242312498:242312705:242343242:242343317,	242312499	242312705	242312706	242312706	Splice_Site	G	T	e1+1
ESCA	TCGA-KH-A6WC-01	FASN	ENST00000306749.2	chr17	80039476:80039719:80039884:80040036:80040198:80040290,	80039885	80040036	80039884	80039884	Splice_Site	C	G	e35+1
ESCA	TCGA-2H-A9GJ-01	FAXDC2	ENST00000517938.1,ENST00000522825.1,ENST00000520581.1,ENST00000326080.5	chr5	154202086:154202137:154202946:154203152:154210360:154210482,	154202947	154203152	154202946	154202946	Splice_Site	C	T	e5+1
ESCA	TCGA-L5-A4OI-01	FCRL3	ENST00000477837.1,ENST00000473231.1,ENST00000368184.3,ENST00000480682.1,ENST00000492769.1,ENST00000494724.1,ENST00000485028.1,ENST00000368186.5	chr1	157659587:157659707:157660044:157660323:157665118:157665199,	157660045	157660323	157660325	157660325	Splice_Site	T	C	e8-2
ESCA	TCGA-XP-A8T6-01	FERMT1	ENST00000217289.4	chr20	6088178:6088281:6090944:6091158:6093123:6093270,	6090945	6091158	6091160	6091160	Splice_Site	T	A	e4-2
ESCA	TCGA-L5-A8NW-01	FILIP1	ENST00000393004.2	chr6	76001574:76005666:76018555:76018613:76022112:76024918,	76018556	76018613	76018615	76018615	Splice_Site	T	A	e5-2
ESCA	TCGA-2H-A9GJ-01	FMN2	ENST00000319653.9,ENST00000545751.1	chr1	240497408:240497529:240519115:240519208:240555810:240555862,	240519116	240519208	240519210	240519210	Splice_Site	T	C	e14+2
ESCA	TCGA-L5-A8NE-01	FURIN	ENST00000268171.3	chr15	91420364:91420441:91420756:91420845:91421361:91421534,	91420757	91420845	91420846	91420846	Splice_Site	G	A	e6+1
ESCA	TCGA-X8-AAAR-01	GBA	ENST00000491081.1,ENST00000427500.3,ENST00000368373.3,ENST00000428024.3,ENST00000327247.5,ENST00000536770.1,ENST00000497670.1	chr1	155206186:155206260:155207131:155207369:155207924:155208097,	155207132	155207369	155207371	155207371	Splice_Site	T	C	e7-2
ESCA	TCGA-Z6-A8JE-01	GCC2	ENST00000409821.1,ENST00000309863.6	chr2	109066088:109066145:109067483:109067568:109068854:109068922,	109067484	109067568	109067569	109067569	Splice_Site	G	A	e3+1
ESCA	TCGA-R6-A6Y0-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086106	109086106	Splice_Site	G	T	e6-1
ESCA	TCGA-L5-A4OI-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000470197.1,ENST00000409857.3	chr2	75914952:75915103:75916151:75916351:75917094:75917207,	75916152	75916351	75916352	75916352	Splice_Site	C	A	e10-1
ESCA	TCGA-L5-A8NH-01	GLYCTK	ENST00000473032.1	chr3	52326275:52326585:52327061:52327208:52327322:52327485,52324975:52325127:52327061:52327208:52327322:52327485,	52327062	52327208	52327061	52327061	Splice_Site	G	C	e5-1
ESCA	TCGA-2H-A9GO-01	GOLGA2	ENST00000450617.1,ENST00000458730.1,ENST00000609374.1,ENST00000421699.2	chr9	131030212:131030276:131030395:131030439:131030698:131030803,	131030396	131030439	131030440	131030440	Splice_Site	C	G	e4-1
ESCA	TCGA-LN-A49L-01	GRIA1	ENST00000448073.4,ENST00000340592.5	chr5	153149727:153149975:153175035:153175150:153181915:153182050,	153175036	153175150	153175034	153175034	Splice_Site	A	G	e14-2
ESCA	TCGA-L5-A8NI-01	GRK4	ENST00000505271.1	chr4	3029638:3029728:3030927:3031136:3042298:3042454,	3030928	3031136	3030927	3030927	Splice_Site	G	T	e12-1
ESCA	TCGA-L5-A4OI-01	GZF1	ENST00000377051.2,ENST00000338121.5	chr20	23345855:23346384:23347639:23347734:23349398:23349544,	23347640	23347734	23347639	23347639	Splice_Site	G	T	e2-1
ESCA	TCGA-L5-A4OI-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000490851.1,ENST00000401921.1,ENST00000523867.1	chr7	18868783:18868839:18869083:18869171:18875089:18875209,	18869084	18869171	18869172	18869172	Splice_Site	G	T	e18+1
ESCA	TCGA-L5-A88T-01	HDDC3	ENST00000394272.3,ENST00000561036.1,ENST00000494993.1	chr15	91474566:91474635:91474933:91475174:91475284:91475340,	91474934	91475174	91475176	91475176	Splice_Site	T	C	e3-2
ESCA	TCGA-LN-A8I1-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93250956:93251064:93252108:93252241,93247438:93247535:93250956:93251064:93252108:93252241,	93250957	93251064	93250956	93250956	Splice_Site	G	A	e13-1
ESCA	TCGA-Z6-AAPN-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324463	31324463	Splice_Site	A	G	e2+2
ESCA	TCGA-Z6-AAPN-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324464	31324464	Splice_Site	C	A	e2+1
ESCA	TCGA-2H-A9GO-01	IAH1	ENST00000492223.1	chr2	9616115:9616168:9618382:9618499:9621414:9621576,9614706:9614776:9618382:9618499:9621414:9621576,	9618383	9618499	9618381	9618381	Splice_Site	A	G	e2-2
ESCA	TCGA-L5-A4OG-01	IDH3G	ENST00000454076.1,ENST00000217901.5,ENST00000427365.2,ENST00000370092.3,ENST00000370093.1	chrX	153051809:153051904:153052255:153052402:153052505:153052608,	153052256	153052402	153052255	153052255	Splice_Site	C	G	e10+1
ESCA	TCGA-L5-A88Z-01	IFRD2	ENST00000414734.1	chr3	50326685:50326791:50326877:50327193:50327359:50327517,	50326878	50327193	50327194	50327195	Splice_Site	CT	-	e9-1
ESCA	TCGA-L5-A88Z-01	IFRD2	ENST00000489569.1	chr3	50326877:50327059:50327142:50327193:50327359:50327517,50326685:50326791:50327142:50327193:50327359:50327517,	50327143	50327193	50327194	50327195	Splice_Site	CT	-	e9-1
ESCA	TCGA-JY-A6FG-01	IFT140	ENST00000397417.2,ENST00000565298.1,ENST00000439987.2,ENST00000426508.2	chr16	1618217:1618335:1621407:1621535:1630759:1630851,	1621408	1621535	1621406	1621406	Splice_Site	A	G	e12+2
ESCA	TCGA-LN-A8I0-01	INSIG1	ENST00000340368.4	chr7	155090270:155090407:155094456:155094556:155099950:155100467,155093960:155094127:155094456:155094556:155099950:155100467,	155094457	155094556	155094456	155094456	Splice_Site	G	A	e4-1
ESCA	TCGA-VR-A8EU-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000440600.2	chr1	212118125:212118311:212119948:212120047:212125910:212126043,	212119949	212120047	212120048	212120048	Splice_Site	C	T	e17-1
ESCA	TCGA-VR-A8ET-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000461212.1,ENST00000366992.3,ENST00000440600.2,ENST00000366993.3	chr1	212141219:212141323:212141854:212142049:212148507:212148684,	212141855	212142049	212142051	212142052	Splice_Site	-	G	e13-2
ESCA	TCGA-L5-A43E-01	IRAK4	ENST00000552309.1	chr12	44165982:44166165:44166714:44166789:44167767:44167832,	44166715	44166789	44166790	44166790	Splice_Site	G	T	e2+1
ESCA	TCGA-L5-A4OI-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52351367:52351518:52351813:52351979:52353854:52353931,	52351814	52351979	52351981	52351982	Splice_Site	-	A	e9+2
ESCA	TCGA-L5-A43I-01	ITIH5	ENST00000434980.1,ENST00000446830.2,ENST00000397146.2,ENST00000476417.1,ENST00000397145.2,ENST00000298441.6,ENST00000256861.6,ENST00000461751.1	chr10	7618854:7618975:7621717:7622027:7627863:7628032,	7621718	7622027	7621717	7621717	Splice_Site	C	A	e9+1
ESCA	TCGA-Z6-A8JD-01	JAKMIP1	ENST00000409021.3,ENST00000473053.1,ENST00000457227.2,ENST00000410077.2,ENST00000282924.5,ENST00000409831.1	chr4	6066606:6066735:6081898:6082039:6083335:6083482,6080665:6080725:6081898:6082039:6083335:6083482,	6081899	6082039	6082040	6082040	Splice_Site	C	G	e6-1
ESCA	TCGA-JY-A6FG-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75156763:75157410:75171619:75171738:75227095:75227855,	75171620	75171738	75171619	75171619	Splice_Site	C	T	e3+1
ESCA	TCGA-IG-A51D-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44948987:44949175:44949967:44950109:44966654:44966781,	44949968	44950109	44950110	44950110	Splice_Site	G	A	e26+1
ESCA	TCGA-IG-A4P3-01	KIAA0586	ENST00000555397.1	chr14	58975288:58975427:58979239:58979345:59006788:59006854,58975288:58975427:58979239:58979345:59014498:59014741,	58979240	58979345	58979346	58979346	Splice_Site	G	T	e29+1
ESCA	TCGA-JY-A93F-01	KIAA1109	ENST00000495260.1,ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123145655:123145832:123147861:123147990:123150275:123150350,	123147862	123147990	123147861	123147861	Splice_Site	G	A	e22-1
ESCA	TCGA-Z6-A8JE-01	KIAA1328	ENST00000543923.1,ENST00000280020.5,ENST00000592611.1,ENST00000591619.1	chr18	34647302:34647508:34740162:34740344:34752935:34753044,	34740163	34740344	34740346	34740346	Splice_Site	T	A	e8+2
ESCA	TCGA-R6-A6Y2-01	KIN	ENST00000535925.1,ENST00000543003.1,ENST00000379562.4	chr10	7816793:7816854:7817713:7817762:7820800:7820982,	7817714	7817762	7817764	7817765	Splice_Site	-	A	e6-2
ESCA	TCGA-L5-A8NW-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635918	33635918	Splice_Site	G	T	e4+1
ESCA	TCGA-RE-A7BO-01	KNG1	ENST00000447445.1,ENST00000265023.4,ENST00000287611.2	chr3	186456887:186456995:186457116:186457203:186459310:186459388,	186457117	186457203	186457204	186457204	Splice_Site	G	T	e9+1
ESCA	TCGA-2H-A9GK-01	L3HYPDH	ENST00000481608.1	chr14	59942809:59942932:59945899:59946069:59950397:59950724,	59945900	59946069	59946071	59946072	Splice_Site	-	A	e2-2
ESCA	TCGA-JY-A93D-01	LBH	ENST00000406087.1	chr2	30454402:30454630:30457270:30457377:30480298:30480414,	30457271	30457377	30457270	30457270	Splice_Site	G	A	e2-1
ESCA	TCGA-JY-A6FH-01	LEPR	ENST00000462765.1	chr1	65991371:65991501:66031228:66031288:66036155:66036485,	66031229	66031288	66031227	66031227	Splice_Site	A	G	e1-2
ESCA	TCGA-V5-AASV-01	LGR6	ENST00000487787.1,ENST00000367278.3,ENST00000439764.2,ENST00000255432.7	chr1	202275995:202276067:202276457:202276529:202278178:202278304,	202276458	202276529	202276457	202276457	Splice_Site	G	T	e14-1
ESCA	TCGA-IG-A3I8-01	LRRC37A3	ENST00000584306.1,ENST00000334962.5,ENST00000400877.3,ENST00000319651.5,ENST00000339474.5	chr17	62851957:62852007:62854896:62855001:62855559:62855745,	62854897	62855001	62855003	62855004	Splice_Site	-	A	e10-2
ESCA	TCGA-L5-A8NM-01	LTN1	ENST00000389194.2,ENST00000361371.5	chr21	30332838:30333028:30338186:30338228:30338691:30339501,	30338187	30338228	30338185	30338185	Splice_Site	A	G	e11+2
ESCA	TCGA-L5-A43J-01	LZTR1	ENST00000479606.1,ENST00000215739.8,ENST00000389355.3	chr22	21346502:21346658:21347082:21347193:21347950:21348043,	21347083	21347193	21347194	21347194	Splice_Site	G	A	e11+1
ESCA	TCGA-L5-A8NM-01	MAN2A2	ENST00000560451.1,ENST00000558161.1,ENST00000558171.1,ENST00000557865.1,ENST00000560192.1,ENST00000360468.3,ENST00000559717.1	chr15	91453445:91453522:91453730:91453913:91454076:91454191,	91453731	91453913	91453730	91453730	Splice_Site	G	-	e10-1
ESCA	TCGA-R6-A6L4-01	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44060543	44060543	Splice_Site	G	C	e5-1
ESCA	TCGA-LN-A9FR-01	MASP1	ENST00000392470.2	chr3	187003612:187003844:187009032:187009138:187009415:187009485,	187009033	187009138	187009140	187009140	Splice_Site	T	-	e1-2
ESCA	TCGA-2H-A9GK-01	MBIP	ENST00000318473.7,ENST00000416007.4	chr14	36774294:36774510:36777297:36777395:36780778:36780796,36769990:36770029:36777297:36777395:36780778:36780796,	36777298	36777395	36777397	36777397	Splice_Site	T	A	e7-2
ESCA	TCGA-2H-A9GF-01	MCPH1	ENST00000344683.5,ENST00000519480.1	chr8	6289019:6289107:6293568:6293683:6296473:6296617,	6293569	6293683	6293568	6293568	Splice_Site	G	T	e5-1
ESCA	TCGA-IG-A625-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627100	29627100	Splice_Site	G	T	e2-1
ESCA	TCGA-VR-AA4D-01	MRPL3	ENST00000511168.1,ENST00000506946.1,ENST00000264995.3,ENST00000507669.1,ENST00000425847.2	chr3	131208824:131208924:131217022:131217121:131219273:131219328,	131217023	131217121	131217123	131217124	Splice_Site	-	A	e4-2
ESCA	TCGA-JY-A93D-01	MRPS14	ENST00000476371.1	chr1	174983380:174983987:174987553:174987712:174992499:174992561,	174987554	174987712	174987553	174987553	Splice_Site	C	T	e2+1
ESCA	TCGA-IG-A50L-01	MS4A12	ENST00000016913.4	chr11	60264785:60265067:60268517:60268655:60269455:60269512,	60268518	60268655	60268516	60268516	Splice_Site	A	G	e2-2
ESCA	TCGA-L5-A8NS-01	MSRB3	ENST00000308259.5	chr12	65672523:65672645:65702308:65702435:65720605:65720714,	65702309	65702435	65702437	65702437	Splice_Site	T	C	e1+2
ESCA	TCGA-LN-A49U-01	MTIF2	ENST00000394600.3,ENST00000263629.4,ENST00000418823.4,ENST00000403721.1	chr2	55467146:55467311:55470075:55470216:55470551:55470804,	55470076	55470216	55470218	55470218	Splice_Site	T	C	e10-2
ESCA	TCGA-VR-AA4D-01	MTSS1	ENST00000524243.1,ENST00000325064.5,ENST00000472084.2,ENST00000354184.4,ENST00000518547.1	chr8	125711766:125711840:125716370:125716432:125740124:125740239,	125716371	125716432	125716370	125716370	Splice_Site	C	T	e2+1
ESCA	TCGA-L5-A8NI-01	MUC5B	ENST00000525715.1,ENST00000529681.1,ENST00000447027.1	chr11	1246910:1246967:1247434:1247506:1247844:1248106,	1247435	1247506	1247507	1247507	Splice_Site	G	A	e3+1
ESCA	TCGA-L5-A88Z-01	MYO7B	ENST00000428314.1,ENST00000389524.4,ENST00000409816.2	chr2	128324217:128324402:128327363:128327485:128331494:128331637,	128327364	128327485	128327486	128327486	Splice_Site	G	A	e5+1
ESCA	TCGA-2H-A9GG-01A-11D-A37C-09	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000601749.1,ENST00000595618.1	chr19	17291735:17291849:17294637:17294677:17295673:17295707,	17294638	17294677	17294679	17294680	Splice_Site	-	A	e15+2
ESCA	TCGA-IG-A50L-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000601749.1,ENST00000595618.1	chr19	17291735:17291849:17294637:17294677:17295673:17295707,	17294638	17294677	17294679	17294680	Splice_Site	-	A	e15+2
ESCA	TCGA-L5-A8NM-01	MYOT	ENST00000239926.4,ENST00000515645.1,ENST00000421631.2	chr5	137213208:137213310:137216504:137216554:137217661:137217794,	137216505	137216554	137216556	137216557	Splice_Site	-	A	e4+2
ESCA	TCGA-L5-A4OE-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000396085.1,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20070273:20070741:20072834:20072879:20075625:20075786,20071381:20071447:20072834:20072879:20075625:20075786,	20072835	20072879	20072880	20072880	Splice_Site	G	T	e18+1
ESCA	TCGA-R6-A6KZ-01	NCAPD2	ENST00000382457.4,ENST00000545732.1,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6623638:6623753:6623938:6624086:6625993:6626037,	6623939	6624086	6624087	6624087	Splice_Site	G	T	e8+1
ESCA	TCGA-IG-A4P3-01	NCAPG	ENST00000514176.1,ENST00000513226.1	chr4	17812650:17812811:17813843:17814047:17814539:17814768,	17813844	17814047	17813843	17813843	Splice_Site	G	T	e2-1
ESCA	TCGA-2H-A9GK-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183800020:183800103:183806797:183806891:183817132:183817230,	183806798	183806891	183806893	183806894	Splice_Site	-	A	e25-2
ESCA	TCGA-L5-A8NJ-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24951176:24951345:24952369:24952684:24962300:24962402,	24952370	24952684	24952369	24952369	Splice_Site	G	A	e13-1
ESCA	TCGA-V5-AASW-01	NEK11	ENST00000510474.1,ENST00000412440.2	chr3	130884269:130884363:130889616:130889731:130947371:130947439,	130889617	130889731	130889732	130889732	Splice_Site	G	T	e12+1
ESCA	TCGA-LN-A7HV-01	NOL4	ENST00000586314.1,ENST00000535475.1,ENST00000590712.1,ENST00000586553.1	chr18	31463207:31463388:31523028:31523142:31538202:31538382,	31523029	31523142	31523144	31523145	Splice_Site	-	A	e9-2
ESCA	TCGA-LN-A49X-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15296067:15296219:15296297:15296490:15297688:15297799,	15296298	15296490	15296491	15296491	Splice_Site	C	T	e13-1
ESCA	TCGA-JY-A6FA-01	NPLOC4	ENST00000571562.1	chr17	79579704:79579899:79580075:79580151:79580343:79580373,	79580076	79580151	79580153	79580154	Splice_Site	-	AAA	NULL
ESCA	TCGA-L5-A8NS-01	NRXN2	ENST00000423049.1,ENST00000487484.1,ENST00000301894.2	chr11	64397957:64398045:64402742:64402924:64410010:64410072,	64402743	64402924	64402742	64402742	Splice_Site	C	T	e17+1
ESCA	TCGA-JY-A93F-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709465	176709465	Splice_Site	G	A	e18-1
ESCA	TCGA-JY-A93E-01	NUDCD2	ENST00000302764.4	chr5	162880928:162881056:162883934:162884086:162884567:162884616,	162883935	162884086	162884088	162884089	Splice_Site	-	A	e3-2
ESCA	TCGA-JY-A93D-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17629626:17629770:17632880:17633075:17637383:17638001,	17632881	17633075	17633076	17633076	Splice_Site	C	A	e18-1
ESCA	TCGA-L5-A4OJ-01	OGT	ENST00000455587.1,ENST00000373719.3,ENST00000373701.3	chrX	70764416:70764485:70767756:70767873:70774362:70774442,	70767757	70767873	70767756	70767756	Splice_Site	G	T	e5-1
ESCA	TCGA-Q9-A6FU-01	OTUD6B	ENST00000285420.4	chr8	92083365:92083517:92086058:92086139:92090583:92090896,	92086059	92086139	92086058	92086058	Splice_Site	G	C	e3-1
ESCA	TCGA-IG-A4P3-01	PABPC1	ENST00000518716.1,ENST00000318607.5,ENST00000519004.1,ENST00000522387.1,ENST00000517403.1	chr8	101719016:101719033:101719114:101719225:101721360:101721451,	101719115	101719225	101719226	101719226	Splice_Site	C	G	e10-1
ESCA	TCGA-VR-AA7B-01	PAM	ENST00000438793.3,ENST00000274392.9,ENST00000345721.2,ENST00000348126.2	chr5	102355493:102355547:102363888:102363942:102364590:102364814,102360837:102361038:102363888:102363942:102364590:102364814,	102363889	102363942	102363888	102363888	Splice_Site	G	T	e24-1
ESCA	TCGA-VR-AA4G-01	PANK3	ENST00000520504.1	chr5	167986036:167986162:167988397:167988521:167990893:167991070,167986036:167986162:167988397:167988521:167993017:167993069,	167988398	167988521	167988397	167988397	Splice_Site	C	T	e5+1
ESCA	TCGA-LN-A8I0-01	PARM1	ENST00000307428.7	chr4	75858325:75858580:75937634:75938360:75959092:75959171,	75937635	75938360	75938361	75938361	Splice_Site	G	T	e2+1
ESCA	TCGA-Z6-A8JD-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597511	52597511	Splice_Site	T	C	e24-2
ESCA	TCGA-Z6-A8JD-01	PBRM1	ENST00000394830.3	chr3	52595782:52595984:52597379:52597509:52598065:52598249,	52597380	52597509	52597511	52597511	Splice_Site	T	C	e24-2
ESCA	TCGA-JY-A6F8-01	PCK1	ENST00000319441.4,ENST00000535860.1	chr20	56138083:56138271:56138620:56138783:56139224:56139449,	56138621	56138783	56138620	56138620	Splice_Site	G	T	e5-1
ESCA	TCGA-VR-A8EX-01	PCM1	ENST00000517730.1,ENST00000518537.1	chr8	17797317:17797370:17797550:17797667:17804694:17804872,	17797551	17797667	17797549	17797549	Splice_Site	A	G	e5-2
ESCA	TCGA-M9-A5M8-01	PCSK1	ENST00000311106.3,ENST00000508626.1	chr5	95743926:95744027:95746477:95746690:95748021:95748194,	95746478	95746690	95746477	95746477	Splice_Site	C	T	e8+1
ESCA	TCGA-L5-A4OI-01	PDCD1LG2	ENST00000397747.3	chr9	5549334:5549604:5557617:5557752:5563161:5563211,	5557618	5557752	5557753	5557756	Splice_Site	GTAA	-	e4+1
ESCA	TCGA-VR-A8EY-01	PDE3A	ENST00000359062.3,ENST00000544307.1	chr12	20782841:20783061:20786626:20786712:20787835:20787990,	20786627	20786712	20786713	20786713	Splice_Site	G	T	e7+1
ESCA	TCGA-LN-A8I1-01	PDLIM2	ENST00000397761.2,ENST00000397760.4,ENST00000265810.4,ENST00000456545.1,ENST00000339162.7,ENST00000426493.1,ENST00000308354.7,ENST00000429812.1,ENST00000436754.1,ENST00000409141.1,ENST00000409417.1,ENST00000452226.1	chr8	22438115:22438210:22438891:22439043:22442333:22442403,	22438892	22439043	22439044	22439044	Splice_Site	G	T	e3+1
ESCA	TCGA-R6-A6XQ-01	PGK1	ENST00000491291.1,ENST00000537456.1,ENST00000373316.4	chrX	77365363:77365414:77369240:77369396:77369512:77369657,	77369241	77369396	77369397	77369397	Splice_Site	G	T	e3+1
ESCA	TCGA-L5-A4OI-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100933177:100933483:100962490:100962607:100996737:100996889,	100962491	100962607	100962608	100962608	Splice_Site	C	A	e3-1
ESCA	TCGA-2H-A9GF-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100933177:100933483:100962490:100962607:100996737:100996889,	100962491	100962607	100962609	100962610	Splice_Site	-	A	e3-2
ESCA	TCGA-LN-A9FP-01	PHB	ENST00000504124.1,ENST00000300408.3,ENST00000512041.2,ENST00000508009.1,ENST00000446735.1,ENST00000419140.2	chr17	47484122:47484216:47486403:47486520:47486692:47486835,	47486404	47486520	47486521	47486521	Splice_Site	C	A	e4-1
ESCA	TCGA-IG-A8O2-01	PHKB	ENST00000299167.8,ENST00000566044.1,ENST00000566275.2	chr16	47697587:47697645:47699852:47699943:47703125:47703328,	47699853	47699943	47699944	47699944	Splice_Site	G	A	e25+1
ESCA	TCGA-R6-A6L6-01	PIK3R3	ENST00000262741.5,ENST00000354242.4,ENST00000488808.1,ENST00000540385.1,ENST00000372006.1,ENST00000340332.6,ENST00000420542.1,ENST00000423209.1	chr1	46509333:46509543:46511589:46511760:46512222:46512297,	46511590	46511760	46511589	46511589	Splice_Site	C	A	e9+1
ESCA	TCGA-JY-A93E-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155260043:155260469:155261546:155261728:155262967:155263134,	155261547	155261728	155261729	155261729	Splice_Site	C	T	e10-1
ESCA	TCGA-L5-A8NS-01	PLA2R1	ENST00000460710.1	chr2	160788518:160788809:160798256:160798503:160798637:160798670,	160798257	160798503	160798256	160798256	Splice_Site	C	-	NULL
ESCA	TCGA-R6-A8WC-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000418087.1,ENST00000475273.2,ENST00000356327.5,ENST00000342215.6,ENST00000498278.1	chr3	171453281:171453427:171455321:171455449:171455681:171455872,	171455322	171455449	171455451	171455452	Splice_Site	-	A	e2-2
ESCA	TCGA-S8-A6BV-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000418087.1,ENST00000475273.2,ENST00000356327.5,ENST00000342215.6,ENST00000498278.1	chr3	171453281:171453427:171455321:171455449:171455681:171455872,	171455322	171455449	171455451	171455452	Splice_Site	-	A	e2-2
ESCA	TCGA-L5-A891-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99856028:99856147:99857048:99857220:99858616:99858840,	99857049	99857220	99857222	99857222	Splice_Site	T	C	e4-2
ESCA	TCGA-Z6-AAPN-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000458012.2,ENST00000537335.1,ENST00000333990.6,ENST00000448770.1,ENST00000263331.5,ENST00000417433.2	chr2	113330218:113330335:113331138:113331392:113332423:113332666,	113331139	113331392	113331138	113331138	Splice_Site	G	A	e15-1
ESCA	TCGA-L5-A893-01	PPP1R14B	ENST00000542235.1,ENST00000309318.3,ENST00000392210.2	chr11	64012020:64012294:64012401:64012434:64012675:64012755,	64012402	64012434	64012401	64012401	Splice_Site	C	G	e3+1
ESCA	TCGA-LN-A5U7-01	PPP2R1B	ENST00000311129.5,ENST00000341980.6,ENST00000531373.1,ENST00000527614.1	chr11	111631679:111631775:111635528:111635629:111636017:111636108,	111635529	111635629	111635631	111635631	Splice_Site	T	A	e3-2
ESCA	TCGA-L5-A88Z-01	PRDM10	ENST00000423662.2,ENST00000358825.5,ENST00000304538.6,ENST00000526082.1,ENST00000528746.1,ENST00000360871.3	chr11	129812320:129812524:129814665:129814907:129817039:129817187,	129814666	129814907	129814909	129814909	Splice_Site	T	C	e5-2
ESCA	TCGA-L5-A43J-01	PRKACA	ENST00000589994.1,ENST00000587372.1,ENST00000308677.4,ENST00000588209.1,ENST00000536649.1,ENST00000350356.3	chr19	14208172:14208295:14208390:14208486:14208575:14208702,	14208391	14208486	14208488	14208488	Splice_Site	T	C	e7-2
ESCA	TCGA-JY-A938-01	PRKDC	ENST00000523565.1,ENST00000314191.2,ENST00000521331.1	chr8	48691564:48691654:48694722:48694815:48694938:48695152,	48694723	48694815	48694817	48694817	Splice_Site	T	G	e81-2
ESCA	TCGA-L5-A4OH-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301047	179301047	Splice_Site	C	T	e7-1
ESCA	TCGA-R6-A8W5-01	PROSER1	ENST00000602534.1	chr13	39605699:39605768:39608267:39608333:39611334:39611431,	39608268	39608333	39608335	39608336	Splice_Site	-	A	e2-2
ESCA	TCGA-2H-A9GG-01A-11D-A37C-09	PSMC4	ENST00000455878.2,ENST00000593455.1,ENST00000601697.1,ENST00000157812.2	chr19	40480641:40480735:40485723:40485891:40485976:40486053,	40485724	40485891	40485723	40485723	Splice_Site	G	T	e7-1
ESCA	TCGA-VR-A8EW-01	PTCH1	ENST00000331920.6,ENST00000375290.2,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375274.2	chr9	98239040:98239139:98239828:98239984:98240336:98240468,	98239829	98239984	98239986	98239986	Splice_Site	T	A	e10-2
ESCA	TCGA-R6-A8W8-01	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70915182:70915291:70918250:70918371:70925814:70925950,	70918251	70918371	70918373	70918373	Splice_Site	T	C	e33-2
ESCA	TCGA-L5-A4OI-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000577827.1,ENST00000400060.4	chr18	8379164:8379338:8380293:8380425:8384558:8384684,	8380294	8380425	8380293	8380293	Splice_Site	G	T	e29-1
ESCA	TCGA-JY-A93D-01	PTPRQ	ENST00000266688.5	chr12	81062785:81062920:81063117:81063243:81064122:81064271,	81063118	81063243	81063245	81063246	Splice_Site	-	A	e46+2
ESCA	TCGA-VR-A8Q7-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000513214.1,ENST00000354312.3,ENST00000521422.1,ENST00000345306.6	chr5	68689180:68689327:68692223:68692373:68695875:68695996,	68692224	68692373	68692375	68692376	Splice_Site	-	A	e13+2
ESCA	TCGA-Z6-A8JE-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000513214.1,ENST00000354312.3,ENST00000521422.1,ENST00000345306.6	chr5	68689180:68689327:68692223:68692373:68695875:68695996,	68692224	68692373	68692375	68692376	Splice_Site	-	AA	e13+2
ESCA	TCGA-JY-A6F8-01	RAPGEF4	ENST00000538974.1,ENST00000540783.1,ENST00000397081.3,ENST00000535187.1,ENST00000539331.1,ENST00000264111.6,ENST00000397087.3	chr2	173900852:173900940:173901355:173901420:173913327:173913382,	173901356	173901420	173901421	173901421	Splice_Site	G	T	e29+1
ESCA	TCGA-L5-A8NN-01	RBMS2	ENST00000262031.5,ENST00000550726.1,ENST00000552247.2,ENST00000552228.1	chr12	56965481:56965639:56974967:56975047:56975182:56975292,	56974968	56975047	56974967	56974967	Splice_Site	G	T	e6-1
ESCA	TCGA-S8-A6BW-01	RBMY1A1	ENST00000382707.2,ENST00000303902.5	chrY	23699360:23699464:23702483:23702661:23704576:23704729,	23702484	23702661	23702662	23702662	Splice_Site	G	A	e3+1
ESCA	TCGA-L5-A8NM-01	RFX2	ENST00000592337.1,ENST00000359161.3,ENST00000592546.1,ENST00000586806.1,ENST00000303657.5,ENST00000588021.1	chr19	6010192:6010262:6012996:6013116:6016100:6016282,	6012997	6013116	6013117	6013117	Splice_Site	C	A	e7-1
ESCA	TCGA-L5-A4OI-01	RICTOR	ENST00000296782.5	chr5	38947365:38947543:38949457:38949529:38949813:38949901,	38949458	38949529	38949530	38949530	Splice_Site	C	T	e32-1
ESCA	TCGA-VR-AA4D-01	RNF214	ENST00000530849.1,ENST00000531287.1,ENST00000531452.1,ENST00000300650.4	chr11	117152029:117152120:117152315:117152414:117152609:117152627,	117152316	117152414	117152314	117152314	Splice_Site	A	T	e9-2
ESCA	TCGA-L5-A8NS-01	RNF40	ENST00000566703.1,ENST00000324685.6,ENST00000493683.1	chr16	30776745:30776820:30777483:30777603:30777699:30777879,	30777484	30777603	30777483	30777483	Splice_Site	G	C	e8-1
ESCA	TCGA-2H-A9GF-01	ROBO2	ENST00000473767.1	chr3	77612317:77612480:77613600:77613739:77614104:77614271,	77613601	77613739	77613741	77613742	Splice_Site	TA	-	e12+2
ESCA	TCGA-JY-A939-01	RPAIN	ENST00000405578.4,ENST00000381209.3	chr17	5329295:5329402:5329555:5329619:5335861:5335928,5326088:5326149:5329555:5329619:5331390:5331531,5326088:5326149:5329555:5329619:5335861:5335928,5329295:5329402:5329555:5329619:5331390:5331531,	5329556	5329619	5329555	5329555	Splice_Site	G	T	e5-1
ESCA	TCGA-XP-A8T6-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116948791	116948791	Splice_Site	G	T	e3-1
ESCA	TCGA-L5-A8NW-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022582	64022583	Splice_Site	-	A	e2-2
ESCA	TCGA-LN-A49W-01	SCRN3	ENST00000409673.3	chr2	175260470:175260545:175263093:175263170:175264649:175264826,	175263094	175263170	175263171	175263171	Splice_Site	G	T	e1+1
ESCA	TCGA-LN-A49W-01	SCRN3	ENST00000458563.1	chr2	175260470:175260545:175263002:175263170:175264649:175264826,175260519:175260717:175263002:175263170:175264649:175264831,175262063:175262132:175263002:175263170:175264649:175264831,	175263003	175263170	175263171	175263171	Splice_Site	G	T	e1+1
ESCA	TCGA-IG-A4P3-01	SEC24A	ENST00000398844.2,ENST00000322887.4	chr5	134002512:134002686:134007498:134007576:134010304:134010465,	134007499	134007576	134007577	134007577	Splice_Site	G	T	e4+1
ESCA	TCGA-L5-A43E-01	SEC24D	ENST00000419654.2,ENST00000511481.1,ENST00000379735.5,ENST00000514561.1,ENST00000511033.1,ENST00000280551.6,ENST00000505134.1,ENST00000429811.2	chr4	119665228:119665313:119666098:119666215:119673150:119673244,	119666099	119666215	119666217	119666218	Splice_Site	-	A	e13-2
ESCA	TCGA-V5-A7RC-01	SEC63	ENST00000429168.1,ENST00000369002.4	chr6	108230211:108230239:108232549:108232600:108233919:108233978,	108232550	108232600	108232548	108232548	Splice_Site	A	C	e7+2
ESCA	TCGA-2H-A9GK-01	SELP	ENST00000367788.2,ENST00000367792.2,ENST00000367795.2,ENST00000458599.2,ENST00000263686.6,ENST00000367791.2,ENST00000367794.2,ENST00000367786.2,ENST00000367793.2	chr1	169586265:169586652:169588366:169588457:169599309:169599314,	169588367	169588457	169588459	169588459	Splice_Site	T	C	e2-2
ESCA	TCGA-L5-A4OF-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101051613:101051706:101056352:101056475:101058938:101059055,	101056353	101056475	101056352	101056352	Splice_Site	C	T	e17+1
ESCA	TCGA-IC-A6RE-01	SEPT3	ENST00000396417.2,ENST00000328414.8	chr22	42373053:42373078:42377648:42377840:42381987:42382116,42373053:42373078:42377648:42377840:42383625:42383693,	42377649	42377840	42377841	42377841	Splice_Site	G	T	e2+1
ESCA	TCGA-LN-A49Y-01	SEZ6L2	ENST00000308713.5	chr16	29908279:29908442:29909173:29909305:29910261:29910385,	29909174	29909305	29909173	29909173	Splice_Site	C	G	e2+1
ESCA	TCGA-VR-A8EX-01	SF3B3	ENST00000302516.5,ENST00000563739.1	chr16	70598967:70599173:70599270:70599427:70601313:70601439,	70599271	70599427	70599428	70599428	Splice_Site	G	T	e19+1
ESCA	TCGA-LN-A7HY-01	SFXN5	ENST00000272433.2,ENST00000463277.1,ENST00000474528.1	chr2	73198698:73198814:73215386:73215477:73226077:73226143,	73215387	73215477	73215478	73215478	Splice_Site	C	G	e10-1
ESCA	TCGA-L5-A8NQ-01	SIM1	ENST00000369208.3,ENST00000262901.4	chr6	100838958:100838967:100841362:100841765:100868665:100868834,	100841363	100841765	100841766	100841766	Splice_Site	C	G	e10-1
ESCA	TCGA-LN-A49U-01	SLAMF6	ENST00000368057.3	chr1	160460914:160461178:160465850:160466183:160492933:160493032,	160465851	160466183	160465850	160465850	Splice_Site	C	G	e2+1
ESCA	TCGA-JY-A939-01	SLC12A7	ENST00000264930.5	chr5	1076808:1076927:1077947:1078122:1078815:1078873,	1077948	1078122	1078124	1078125	Splice_Site	-	GCAG	e12-2
ESCA	TCGA-S8-A6BV-01	SLC12A7	ENST00000264930.5	chr5	1076808:1076927:1077947:1078122:1078815:1078873,	1077948	1078122	1078124	1078125	Splice_Site	-	GCAG	e12-2
ESCA	TCGA-LN-A5U7-01	SLC26A3	ENST00000340010.5	chr7	107412498:107412553:107414364:107414598:107415221:107415317,	107414365	107414598	107414599	107414599	Splice_Site	C	A	e16-1
ESCA	TCGA-R6-A8W8-01	SLC38A6	ENST00000525723.2	chr14	61518797:61518853:61519066:61519703:61545527:61545645,	61519067	61519703	61519066	61519066	Splice_Site	G	A	e16-1
ESCA	TCGA-L5-A8NV-01	SLC5A11	ENST00000488922.2,ENST00000568579.1,ENST00000424767.2,ENST00000347898.3,ENST00000539472.1,ENST00000567758.1,ENST00000565769.1,ENST00000545376.1	chr16	24895371:24895452:24902189:24902395:24909294:24909430,	24902190	24902395	24902396	24902396	Splice_Site	G	T	e8+1
ESCA	TCGA-M9-A5M8-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000522124.1,ENST00000518864.1	chr8	51571151:51571223:51617159:51617312:51621445:51621538,	51617160	51617312	51617159	51617159	Splice_Site	G	A	e14-1
ESCA	TCGA-L5-A4OI-01	SNX1	ENST00000559844.1,ENST00000261889.5,ENST00000560260.1,ENST00000561026.1,ENST00000380285.3,ENST00000560829.1	chr15	64422426:64422520:64423885:64424091:64426862:64427000,	64423886	64424091	64424092	64424092	Splice_Site	G	A	e11+1
ESCA	TCGA-Q9-A6FU-01	SPAG17	ENST00000336338.5	chr1	118584425:118584665:118596624:118596716:118598355:118598537,	118596625	118596716	118596717	118596717	Splice_Site	C	A	e20-1
ESCA	TCGA-R6-A6Y0-01	SPARCL1	ENST00000541496.1	chr4	88416164:88416279:88420672:88420737:88450196:88450244,88416132:88416295:88420672:88420737:88450196:88450244,	88420673	88420737	88420738	88420738	Splice_Site	C	A	e1-1
ESCA	TCGA-L5-A88V-01	SSR1	ENST00000475213.1	chr6	7269170:7269387:7288094:7288155:7289915:7290083,	7288095	7288155	7288157	7288158	Splice_Site	-	A	NULL
ESCA	TCGA-L5-A43H-01	STAT4	ENST00000392320.2,ENST00000495849.1,ENST00000358470.4	chr2	191905790:191905874:191919215:191919260:191922743:191922837,	191919216	191919260	191919261	191919261	Splice_Site	C	A	e13-1
ESCA	TCGA-IC-A6RE-01	SUSD2	ENST00000358321.3,ENST00000463101.1	chr22	24581453:24581539:24581628:24581897:24581983:24582127,	24581629	24581897	24581898	24581898	Splice_Site	G	T	e8+1
ESCA	TCGA-VR-AA7B-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000323981.2	chr11	93469455:93469470:93469859:93469917:93470229:93470405,	93469860	93469917	93469859	93469859	Splice_Site	C	G	e4+1
ESCA	TCGA-V5-A7RB-01	TBC1D1	ENST00000406664.1	chr4	38119653:38119813:38126582:38126752:38134704:38134878,38121574:38121729:38126582:38126752:38134704:38134878,	38126583	38126752	38126581	38126581	Splice_Site	A	T	e17-2
ESCA	TCGA-L5-A8NV-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179587733:179587817:179590169:179590226:179599901:179600055,	179590170	179590226	179590227	179590230	Splice_Site	GTAA	-	e5+1
ESCA	TCGA-LN-A9FO-01	TGM3	ENST00000381458.5	chr20	2308765:2309011:2312647:2312956:2315761:2315919,	2312648	2312956	2312957	2312957	Splice_Site	G	T	e10+1
ESCA	TCGA-L5-A893-01	THYN1	ENST00000392595.2,ENST00000392594.3,ENST00000341541.3	chr11	134118181:134118378:134118702:134118853:134119060:134119156,	134118703	134118853	134118702	134118702	Splice_Site	C	T	e6+1
ESCA	TCGA-L5-A893-01	TLN2	ENST00000306829.6,ENST00000561311.1	chr15	63011965:63012079:63014551:63014686:63017174:63017303,	63014552	63014686	63014551	63014551	Splice_Site	G	T	e23-1
ESCA	TCGA-L7-A56G-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000381414.4	chr16	19481002:19481147:19485446:19485598:19488761:19488840,19483409:19483565:19485446:19485598:19488761:19488840,	19485447	19485598	19485599	19485599	Splice_Site	G	A	e10+1
ESCA	TCGA-Z6-A8JD-01	TMEM145	ENST00000598766.1	chr19	42818423:42818498:42818572:42818680:42818764:42818846,	42818573	42818680	42818572	42818572	Splice_Site	G	T	e3-1
ESCA	TCGA-R6-A8WG-01	TMEM214	ENST00000425720.1,ENST00000444135.1,ENST00000435172.1,ENST00000404032.3,ENST00000321326.7,ENST00000238788.9	chr2	27261013:27261105:27261351:27261400:27261569:27261662,	27261352	27261400	27261402	27261402	Splice_Site	T	C	e11+2
ESCA	TCGA-LN-A8HZ-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574035	7574035	Splice_Site	T	G	e9-2
ESCA	TCGA-R6-A6Y0-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577017	7577017	Splice_Site	A	C	e7+2
ESCA	TCGA-V5-A7RE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577017	7577017	Splice_Site	A	C	e7+2
ESCA	TCGA-V5-A7RC-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577018	7577018	Splice_Site	C	T	e7+1
ESCA	TCGA-IG-A625-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	A	e5+1
ESCA	TCGA-LN-A9FR-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	G	e5-1
ESCA	TCGA-IG-A97H-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578291	7578291	Splice_Site	T	A	e5-2
ESCA	TCGA-LN-A9FR-01	TRIM55	ENST00000315962.4	chr8	67064614:67064862:67066281:67066569:67086705:67086827,	67066282	67066569	67066571	67066571	Splice_Site	T	C	e9+2
ESCA	TCGA-L5-A8NK-01	TRMT11	ENST00000334379.5,ENST00000453993.2,ENST00000368332.3	chr6	126320685:126320759:126329537:126329618:126332398:126332420,	126329538	126329618	126329537	126329537	Splice_Site	G	T	e8-1
ESCA	TCGA-IG-A6QS-01	TROVE2	ENST00000400968.2,ENST00000367445.3,ENST00000367444.3,ENST00000367441.1,ENST00000416058.2,ENST00000367446.3,ENST00000367443.1	chr1	193028788:193028906:193044949:193045170:193045630:193045777,193038361:193038764:193044949:193045170:193045630:193045777,	193044950	193045170	193045171	193045171	Splice_Site	G	T	e2+1
ESCA	TCGA-LN-A4MR-01	TSGA10	ENST00000539964.1,ENST00000393483.3,ENST00000355053.4,ENST00000410001.1	chr2	99614659:99614684:99634662:99634812:99634998:99635103,	99634663	99634812	99634813	99634813	Splice_Site	C	T	e15-1
ESCA	TCGA-L5-A8NV-01	TYRO3	ENST00000560227.1,ENST00000263798.3,ENST00000559066.1	chr15	41857223:41857339:41859557:41859735:41860414:41860463,	41859558	41859735	41859736	41859736	Splice_Site	G	C	e7+1
ESCA	TCGA-L5-A43I-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865875	41865875	Splice_Site	A	T	e18-2
ESCA	TCGA-R6-A6DN-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865875	41865875	Splice_Site	A	T	e18-2
ESCA	TCGA-L5-A4OI-01	UQCRC2	ENST00000268379.4,ENST00000561553.1,ENST00000563898.1,ENST00000563711.1	chr16	21976728:21976826:21979948:21980006:21982845:21982941,	21979949	21980006	21980007	21980007	Splice_Site	G	T	e8+1
ESCA	TCGA-2H-A9GR-01	USP43	ENST00000574408.1	chr17	9569964:9570068:9578207:9578300:9580062:9580198,9559752:9559851:9578207:9578300:9580062:9580198,	9578208	9578300	9578207	9578207	Splice_Site	G	T	e4-1
ESCA	TCGA-IG-A625-01	UTY	ENST00000538878.1,ENST00000331397.4,ENST00000382896.4,ENST00000540140.1,ENST00000362096.4,ENST00000545955.1,ENST00000329134.5	chrY	15438100:15438230:15447442:15448215:15466882:15467278,	15447443	15448215	15448217	15448218	Splice_Site	-	A	e17-2
ESCA	TCGA-IG-A3QL-01	WDR81	ENST00000419248.1,ENST00000446363.1,ENST00000437219.2,ENST00000309182.5,ENST00000409644.1,ENST00000545662.1	chr17	1638865:1639011:1639332:1639512:1640658:1641448,	1639333	1639512	1639332	1639332	Splice_Site	G	T	e9-1
ESCA	TCGA-LN-A9FP-01	WRN	ENST00000298139.5,ENST00000521620.1	chr8	31001065:31001139:31004568:31004644:31004879:31004992,	31004569	31004644	31004645	31004645	Splice_Site	G	T	e28+1
ESCA	TCGA-L5-A4OI-01	YBEY	ENST00000468924.1	chr21	47706297:47706329:47706783:47707037:47711247:47711376,	47706784	47707037	47707039	47707040	Splice_Site	-	AA	e1+2
ESCA	TCGA-JY-A6FB-01	ZIK1	ENST00000597850.1	chr19	58095627:58095980:58096319:58096358:58099906:58099983,58095627:58095757:58096319:58096358:58099906:58099983,	58096320	58096358	58096319	58096319	Splice_Site	G	T	e2-1
ESCA	TCGA-Q9-A6FW-01	ZNF280D	ENST00000267807.7,ENST00000559237.1	chr15	56946395:56946432:56946582:56946701:56950621:56950684,	56946583	56946701	56946582	56946582	Splice_Site	C	T	e16+1
ESCA	TCGA-JY-A6FG-01	ZNF280D	ENST00000267807.7,ENST00000559237.1	chr15	56946395:56946432:56946582:56946701:56950621:56950684,	56946583	56946701	56946703	56946704	Splice_Site	-	A	e16-2
ESCA	TCGA-VR-A8ET-01	ZWINT	ENST00000395405.1,ENST00000361148.6,ENST00000373944.3	chr10	58119447:58119614:58119778:58119902:58120053:58120144,	58119779	58119902	58119778	58119778	Splice_Site	C	T	e3+1
GBM	TCGA-02-0055-01	ANO2	ENST00000327087.8,ENST00000356134.5	chr12	5841685:5841796:5842031:5842043:5848482:5848565,	5842032	5842043	5842030	5842030	Splice_Site	A	G	p.Q478_splice
GBM	TCGA-02-2470-01	NKAIN1	ENST00000373736.2,ENST00000530145.1,ENST00000263693.1	chr1	31656663:31656861:31658093:31658174:31660896:31661000,	31658094	31658174	31658176	31658176	Splice_Site	T	C	p.Y65_splice
GBM	TCGA-06-0122-01	PPOX	ENST00000352210.5,ENST00000494216.1,ENST00000367999.4	chr1	161137884:161137917:161138221:161138366:161138782:161138973,	161138222	161138366	161138221	161138221	Splice_Site	G	T	p.V158_splice
GBM	TCGA-06-0124-01	CCNY	ENST00000465416.1	chr10	35814891:35814927:35819051:35819171:35841946:35842111,	35819052	35819171	35819172	35819172	Splice_Site	G	A	p.L193_splice
GBM	TCGA-06-0124-01	SLC34A2	ENST00000504570.1	chr4	25657465:25657512:25664119:25664234:25664326:25664464,25657465:25657512:25664119:25664234:25664329:25664464,	25664120	25664234	25664233	25664236	Splice_Site	AAGT	-	p.T38_splice
GBM	TCGA-06-0125-02	SSR3	ENST00000467733.1,ENST00000476217.1,ENST00000467789.1	chr3	156266693:156266792:156271443:156271570:156272745:156272906,	156271444	156271570	156271443	156271444	Splice_Site	-	TTGTGCTTG	p.K87_splice
GBM	TCGA-06-0145-01	GABRE	ENST00000370325.1,ENST00000370328.3	chrX	151128310:151128448:151129754:151129837:151130894:151130984,	151129755	151129837	151129839	151129839	Splice_Site	T	A	p.R188_splice
GBM	TCGA-06-0154-01	RPL5	ENST00000370321.3,ENST00000315741.5	chr1	93300335:93300470:93301746:93301949:93303012:93303026,	93301747	93301949	93301746	93301746	Splice_Site	G	C	p.L109_splice
GBM	TCGA-06-0155-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000495810.1,ENST00000356674.7,ENST00000490912.1	chr7	26236020:26236101:26236176:26236278:26236426:26236527,	26236177	26236278	26236176	26236178	Splice_Site	CCT	-	p.G205_splice
GBM	TCGA-06-0157-01	SYNDIG1	ENST00000376862.3	chr20	24523655:24524213:24565491:24565629:24645981:24646176,	24565492	24565629	24565630	24565630	Splice_Site	G	A	p.E206_splice
GBM	TCGA-06-0157-01	RPS12	ENST00000230050.3	chr6	133136110:133136363:133137599:133137702:133138098:133138200,133136156:133136227:133137599:133137702:133138098:133138200,	133137600	133137702	133137703	133137703	Splice_Site	G	T	p.K78_splice
GBM	TCGA-06-0168-01	SEPT10	ENST00000397714.2,ENST00000334001.6,ENST00000397712.2	chr2	110301813:110301901:110303626:110303814:110310663:110310796,	110303627	110303814	110303622	110303625	Splice_Site	CTTA	-	p.K450_splice
GBM	TCGA-06-0169-01	TRPM4	ENST00000598502.1,ENST00000355712.5,ENST00000427978.2,ENST00000595071.1,ENST00000596338.1,ENST00000595519.1,ENST00000598697.1,ENST00000252826.5	chr19	49703916:49704042:49705220:49705398:49713465:49713662,	49705221	49705398	49705399	49705400	Splice_Site	-	T	p.S1044_splice
GBM	TCGA-06-0171-02	PXK	ENST00000477308.1,ENST00000383715.4,ENST00000463280.1,ENST00000302779.5,ENST00000356151.2,ENST00000459676.2,ENST00000484288.1,ENST00000479241.1,ENST00000383716.3,ENST00000468776.1,ENST00000536660.1,ENST00000479134.1	chr3	58383331:58383449:58385025:58385104:58389588:58389637,	58385026	58385104	58385105	58385105	Splice_Site	G	A	p.P394_splice
GBM	TCGA-06-0185-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3	chr15	43772056:43772215:43773092:43773220:43783866:43783951,	43773093	43773220	43773221	43773221	Splice_Site	C	G	p.S119_splice
GBM	TCGA-06-0188-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576926	7576927	Splice_Site	GC	AT	p.A307_splice
GBM	TCGA-06-0190-02	TRAF6	ENST00000348124.5,ENST00000526995.1	chr11	36516525:36516597:36518657:36518816:36520039:36520190,	36518658	36518816	36518817	36518817	Splice_Site	C	A	p.D150_splice
GBM	TCGA-06-0192-01	CDK17	ENST00000553042.1,ENST00000543119.2,ENST00000261211.3,ENST00000542666.1	chr12	96683035:96683065:96688776:96688900:96691047:96691110,	96688777	96688900	96688901	96688901	Splice_Site	C	G	p.L292_splice
GBM	TCGA-06-0192-01	KEL	ENST00000479768.2,ENST00000467543.1,ENST00000460479.1,ENST00000476829.1,ENST00000355265.2	chr7	142658014:142658191:142658446:142658588:142658881:142658955,	142658447	142658588	142658446	142658446	Splice_Site	C	T	p.R75_splice
GBM	TCGA-06-0209-01	USP28	ENST00000003302.4	chr11	113675649:113675768:113677210:113677306:113679019:113679159,	113677211	113677306	113677209	113677209	Splice_Site	A	G	p.K800_splice
GBM	TCGA-06-0210-02	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169512354	169512354	Splice_Site	T	G	p.G659_splice
GBM	TCGA-06-0214-01	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1615912:1616245:1616833:1617151,	1615913	1616245	1615912	1615912	Splice_Site	C	T	p.G361_splice
GBM	TCGA-06-0214-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7581804	7581804	Splice_Site	T	A	p.E1793_splice
GBM	TCGA-06-0237-01	QKI	ENST00000453779.2,ENST00000361758.4	chr6	163983013:163983101:163984451:163984751:163987752:163987827,163983013:163983101:163984451:163984751:163986977:163987827,	163984452	163984751	163984752	163984755	Splice_Site	GTAA	-	p.G312_splice
GBM	TCGA-06-0237-01	QKI	ENST00000361195.2,ENST00000545607.1	chr6	163983013:163983101:163984475:163984751:163987752:163987827,	163984476	163984751	163984752	163984755	Splice_Site	GTAA	-	p.G312_splice
GBM	TCGA-06-0686-01	FRYL	ENST00000512810.1,ENST00000264319.7,ENST00000503339.1,ENST00000507873.2	chr4	48502046:48502237:48503639:48503750:48507563:48507632,	48503640	48503750	48503638	48503638	Splice_Site	A	C	p.E2864_splice
GBM	TCGA-06-0744-01	KNG1	ENST00000447445.1,ENST00000265023.4,ENST00000287611.2	chr3	186456887:186456995:186457116:186457203:186459310:186459388,	186457117	186457203	186457116	186457116	Splice_Site	G	A	p.Q347_splice
GBM	TCGA-06-0745-01	FSTL1	ENST00000424703.2,ENST00000295633.3	chr3	120121654:120121765:120122088:120122201:120123699:120123818,	120122089	120122201	120122088	120122088	Splice_Site	C	T	p.K232_splice
GBM	TCGA-06-0750-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591246	Splice_Site	A	G	p.M582_splice
GBM	TCGA-06-0875-01	ABCB4	ENST00000265723.4	chr7	87032450:87032597:87035603:87035831:87037352:87037550,	87035604	87035831	87035603	87035603	Splice_Site	C	T	p.H1169_splice
GBM	TCGA-06-0875-01	ABCB4	ENST00000545634.1,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87032450:87032597:87035603:87035810:87037352:87037550,	87035604	87035810	87035603	87035603	Splice_Site	C	T	p.H1169_splice
GBM	TCGA-06-0877-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2,ENST00000425511.1	chr13	75930282:75930387:75933904:75933994:75936161:75936743,	75933905	75933994	75933904	75933904	Splice_Site	C	T	p.Q390_splice
GBM	TCGA-06-2561-01	SOAT1	ENST00000540564.1	chr1	179292571:179292630:179304640:179304792:179306971:179307031,179271811:179271937:179304640:179304792:179306971:179307031,	179304641	179304792	179304793	179304793	Splice_Site	G	C	p.K110_splice
GBM	TCGA-06-2563-01	NCDN	ENST00000373253.3,ENST00000356090.4,ENST00000373243.2	chr1	36025926:36026895:36027992:36028234:36028802:36029027,	36027993	36028234	36028235	36028235	Splice_Site	G	A	p.R462_splice
GBM	TCGA-06-2567-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79581860	79581860	Splice_Site	C	G	p.V795_splice
GBM	TCGA-06-5414-01	KEL	ENST00000479768.2,ENST00000467543.1,ENST00000460479.1,ENST00000476829.1,ENST00000355265.2	chr7	142658014:142658191:142658446:142658588:142658881:142658955,	142658447	142658588	142658590	142658590	Splice_Site	T	C	p.S28_splice
GBM	TCGA-06-5415-01	KEL	ENST00000479768.2,ENST00000467543.1,ENST00000460479.1,ENST00000476829.1,ENST00000355265.2	chr7	142658014:142658191:142658446:142658588:142658881:142658955,	142658447	142658588	142658446	142658446	Splice_Site	C	T	p.R75_splice
GBM	TCGA-06-6388-01	JAG1	ENST00000254958.5	chr20	10639115:10639370:10644610:10644662:10653348:10653654,	10644611	10644662	10644609	10644612	Splice_Site	ACGA	-	p.Q147_splice
GBM	TCGA-06-6388-01	MME	ENST00000462745.1,ENST00000492661.1,ENST00000493237.1,ENST00000360490.2,ENST00000481828.1,ENST00000460393.1,ENST00000462837.1	chr3	154802847:154802883:154832782:154832944:154834267:154834348,	154832783	154832944	154832945	154832945	Splice_Site	G	A	p.D120_splice
GBM	TCGA-06-6391-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18828612:18828792:18830823:18830976:18839352:18839490,	18830824	18830976	18830977	18830977	Splice_Site	C	T	p.E3248_splice
GBM	TCGA-06-6693-01	NIN	ENST00000389868.3,ENST00000382043.4	chr14	51221459:51221585:51226574:51227077:51228507:51228629,	51226575	51227077	51227078	51227078	Splice_Site	C	G	p.V633_splice
GBM	TCGA-06-6694-01	CDK19	ENST00000413605.2	chr6	110953232:110953364:110959851:110959909:110988636:110988777,110953232:110953364:110959851:110959909:110964393:110964521,	110959852	110959909	110959910	110959910	Splice_Site	C	T	p.K153_splice
GBM	TCGA-06-6700-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46431825:46431918:46439462:46439602:46455023:46455178,	46439463	46439602	46439460	46439461	Splice_Site	-	A	p.E1042_splice
GBM	TCGA-06-6700-01	PDPR	ENST00000398122.3,ENST00000562100.1,ENST00000561920.1,ENST00000288050.4,ENST00000568530.1,ENST00000565186.1	chr16	70170096:70170289:70172801:70172926:70176136:70176292,	70172802	70172926	70172800	70172800	Splice_Site	A	G	p.K397_splice
GBM	TCGA-06-6701-01	MMP26	ENST00000300762.1,ENST00000380390.1	chr11	5011827:5011976:5012600:5012726:5013193:5013355,	5012601	5012726	5012728	5012728	Splice_Site	T	C	p.G199_splice
GBM	TCGA-12-0618-01	INCENP	ENST00000528037.1,ENST00000394818.3,ENST00000278849.4	chr11	61896241:61896355:61897253:61898062:61905303:61905355,	61897254	61898062	61898063	61898063	Splice_Site	G	A	p.C355_splice
GBM	TCGA-12-0618-01	MDM2	ENST00000348801.2,ENST00000428863.2	chr12	69207338:69207408:69229608:69229764:69233053:69233629,69203006:69203072:69229608:69229764:69233053:69233062,	69229609	69229764	69229607	69229607	Splice_Site	A	G	p.D122_splice
GBM	TCGA-12-0692-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000531244.1,ENST00000529907.1,ENST00000265636.5,ENST00000529172.1,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2,ENST00000525050.1	chr11	68312305:68312492:68315534:68315672:68318588:68318595,	68315535	68315672	68315674	68315674	Splice_Site	T	G	p.N184_splice
GBM	TCGA-12-0821-01	ZCCHC14	ENST00000268616.4,ENST00000568020.1,ENST00000561928.1	chr16	87448019:87448147:87448881:87448973:87451065:87451348,	87448882	87448973	87448975	87448975	Splice_Site	T	G	p.F325_splice
GBM	TCGA-12-0821-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123171376:123171473:123176418:123176495:123179013:123179058,	123176419	123176495	123176497	123176497	Splice_Site	T	C	p.E154_splice
GBM	TCGA-12-5301-01	EBF3	ENST00000355311.5,ENST00000368648.3	chr10	131676031:131676113:131755521:131755590:131757197:131757271,	131755522	131755590	131755521	131755521	Splice_Site	C	G	p.R171_splice
GBM	TCGA-14-0786-01	PPM1N	ENST00000396735.2	chr19	46000508:46000601:46003206:46003324:46003713:46003819,46002867:46002983:46003206:46003324:46003713:46003819,	46003207	46003324	46003206	46003206	Splice_Site	G	C	p.G314_splice
GBM	TCGA-14-0790-01	ZCCHC17	ENST00000479629.1,ENST00000546109.1,ENST00000373714.1,ENST00000344147.5,ENST00000490049.1,ENST00000422613.2	chr1	31791955:31792013:31810021:31810122:31811803:31811808,	31810022	31810122	31810124	31810125	Splice_Site	-	A	p.E75_splice
GBM	TCGA-14-0862-01	MCOLN1	ENST00000264079.6,ENST00000394321.5	chr19	7593043:7593143:7593482:7593589:7593706:7593856,	7593483	7593589	7593590	7593590	Splice_Site	G	A	p.N328_splice
GBM	TCGA-14-1395-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89088129:89088211:89106599:89106660:89155069:89155150,89088129:89088211:89106599:89106660:89133184:89133247,	89106600	89106660	89106662	89106663	Splice_Site	-	A	p.C359_splice
GBM	TCGA-14-1395-01	COL5A1	ENST00000371817.3	chr9	137674512:137674566:137676834:137676942:137677840:137677894,	137676835	137676942	137676834	137676834	Splice_Site	G	T	p.G829_splice
GBM	TCGA-14-2554-01	EML2	ENST00000590819.1	chr19	46124811:46124895:46127976:46128076:46129962:46130010,46124464:46124590:46127976:46128076:46129962:46130010,	46127977	46128076	46127976	46127976	Splice_Site	C	T	p.G482_splice
GBM	TCGA-14-3476-01	KCNQ4	ENST00000347132.5,ENST00000506017.1	chr1	41287985:41288074:41289768:41289930:41296755:41296976,	41289769	41289930	41289931	41289931	Splice_Site	G	T	p.S431_splice
GBM	TCGA-16-0861-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685315	89685318	Splice_Site	GTAA	-	p.L70_splice
GBM	TCGA-16-1048-01	PNLIP	ENST00000369221.2,ENST00000470562.1	chr10	118306805:118306960:118307871:118307994:118310609:118310744,	118307872	118307994	118307871	118307871	Splice_Site	G	A	p.E68_splice
GBM	TCGA-19-1390-01	DAB1	ENST00000371234.4,ENST00000371231.1,ENST00000485760.1,ENST00000371236.2	chr1	57528562:57528616:57535032:57535098:57536695:57536734,	57535033	57535098	57535099	57535099	Splice_Site	C	T	p.Y200_splice
GBM	TCGA-19-2619-01	ESRRG	ENST00000366938.2,ENST00000359162.2,ENST00000366940.2,ENST00000493748.1,ENST00000360012.3,ENST00000361395.2,ENST00000361525.3,ENST00000408911.3,ENST00000475275.1,ENST00000463665.1,ENST00000487276.1,ENST00000493603.1	chr1	216692493:216692763:216737560:216737722:216741329:216741440,	216737561	216737722	216737723	216737723	Splice_Site	C	G	p.Y234_splice
GBM	TCGA-19-2623-01	RFX4	ENST00000536722.1,ENST00000536688.1,ENST00000357881.4,ENST00000539967.2,ENST00000392842.1,ENST00000549040.1	chr12	107002574:107002661:107033109:107033170:107048005:107048129,	107033110	107033170	107033171	107033172	Splice_Site	-	T	p.W73_splice
GBM	TCGA-19-2629-01	UGT2A3	ENST00000251566.4	chr4	69796872:69796960:69798345:69798477:69811023:69811168,	69798346	69798477	69798344	69798344	Splice_Site	A	G	p.K332_splice
GBM	TCGA-19-2631-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324683	27324683	Splice_Site	T	C	p.N900_splice
GBM	TCGA-19-5947-01	CDH19	ENST00000262150.2	chr18	64176231:64176483:64178804:64178922:64197081:64197203,	64178805	64178922	64178924	64178925	Splice_Site	-	A	p.V487_splice
GBM	TCGA-19-5950-01	EMB	ENST00000303221.5,ENST00000508934.1,ENST00000514111.1,ENST00000505896.1	chr5	49695692:49695747:49698119:49698153:49699011:49699288,	49698120	49698153	49698154	49698154	Splice_Site	C	T	p.D293_splice
GBM	TCGA-19-5955-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591246	Splice_Site	A	G	p.M582_splice
GBM	TCGA-19-5960-01	TBP	ENST00000446829.1	chr6	170878699:170878867:170880497:170880592:170881273:170881941,170878699:170878828:170880497:170880592:170881273:170881941,	170880498	170880592	170880497	170880497	Splice_Site	G	A	p.S282_splice
GBM	TCGA-26-1442-01	ITGA7	ENST00000394230.2,ENST00000257880.7,ENST00000553804.1,ENST00000555728.1,ENST00000347027.6,ENST00000257879.6,ENST00000394229.2,ENST00000452168.2,ENST00000554327.1	chr12	56086924:56087101:56087804:56087907:56088039:56088114,	56087805	56087907	56087909	56087909	Splice_Site	T	C	p.G815_splice
GBM	TCGA-26-1442-01	TNRC18	ENST00000328270.3,ENST00000430969.1	chr7	5352741:5353494:5354614:5354779:5355586:5355703,	5354615	5354779	5354614	5354614	Splice_Site	C	A	p.D2343_splice
GBM	TCGA-26-5134-01	SETD2	ENST00000445387.1,ENST00000409792.3	chr3	47144835:47144913:47147486:47147610:47155365:47155494,	47147487	47147610	47147485	47147485	Splice_Site	A	G	p.E1602_splice
GBM	TCGA-26-5136-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44216366:44216513:44217113:44217320:44217411:44217571,	44217114	44217320	44217321	44217321	Splice_Site	G	T	p.Q118_splice
GBM	TCGA-26-5139-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591247	67591249	Splice_Site	GGT	-	p.M582_splice
GBM	TCGA-26-6174-01	ZMYND19	ENST00000298585.2	chr9	140476530:140477138:140477434:140477615:140481418:140481559,	140477435	140477615	140477434	140477434	Splice_Site	C	T	p.Q180_splice
GBM	TCGA-27-1830-01	SLC22A5	ENST00000475308.1,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1,ENST00000447841.1	chr5	131728124:131728307:131729367:131729503:131729876:131729964,	131729368	131729503	131729366	131729366	Splice_Site	A	G	p.G508_splice
GBM	TCGA-27-1835-01	COL4A6	ENST00000545689.1,ENST00000372216.4,ENST00000394872.2,ENST00000334504.7	chrX	107406121:107406268:107407829:107407928:107408106:107408268,	107407830	107407928	107407829	107407829	Splice_Site	C	A	p.G1358_splice
GBM	TCGA-27-2519-01	ARHGAP28	ENST00000584287.1,ENST00000577524.1	chr18	6851032:6851125:6859829:6859896:6868148:6868230,	6859830	6859896	6859897	6859897	Splice_Site	G	T	p.V190_splice
GBM	TCGA-27-2519-01	ARHGAP28	ENST00000532996.1,ENST00000314319.3,ENST00000400091.2,ENST00000418986.1,ENST00000581099.1,ENST00000383472.4,ENST00000262227.3,ENST00000419673.2	chr18	6851032:6851125:6859806:6859896:6868148:6868230,	6859807	6859896	6859897	6859897	Splice_Site	G	T	p.V190_splice
GBM	TCGA-27-2521-01	SECISBP2L	ENST00000380927.2,ENST00000261847.3,ENST00000559471.1	chr15	49320649:49320879:49325161:49325297:49327530:49327653,	49325162	49325297	49325161	49325161	Splice_Site	C	G	p.D222_splice
GBM	TCGA-27-2524-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951053	48951053	Splice_Site	G	C	p.N406_splice
GBM	TCGA-28-2499-01	NRG1	ENST00000405005.3,ENST00000521670.1,ENST00000522402.1	chr8	32585466:32585596:32599525:32599593:32600192:32600251,32585466:32585596:32599525:32599593:32611889:32611941,	32599526	32599593	32599524	32599524	Splice_Site	A	G	p.K211_splice
GBM	TCGA-28-2513-01	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505208.1,ENST00000429576.2,ENST00000312216.8,ENST00000510732.1,ENST00000513695.1,ENST00000503301.1,ENST00000514780.1,ENST00000507214.1	chr5	94278097:94278131:94288922:94289065:94353070:94353188,	94288923	94289065	94288921	94288921	Splice_Site	A	G	p.K327_splice
GBM	TCGA-28-2513-01	NSMAF	ENST00000038176.3,ENST00000427130.2	chr8	59512308:59512429:59512528:59512580:59513843:59513907,	59512529	59512580	59512581	59512581	Splice_Site	C	T	p.S458_splice
GBM	TCGA-28-2514-01	ANKS3	ENST00000586166.1,ENST00000592077.1,ENST00000585773.1,ENST00000590803.1,ENST00000590193.1,ENST00000590730.1,ENST00000446014.2,ENST00000592698.1,ENST00000304283.4,ENST00000450067.2,ENST00000591653.1,ENST00000592421.1,ENST00000586605.1	chr16	4752167:4752243:4755095:4755254:4764051:4764187,	4755096	4755254	4755095	4755095	Splice_Site	C	T	p.E290_splice
GBM	TCGA-28-5204-01	UBE2M	ENST00000595957.1,ENST00000253023.3	chr19	59067507:59067596:59067682:59067746:59068053:59068157,	59067683	59067746	59067682	59067682	Splice_Site	C	T	p.L137_splice
GBM	TCGA-28-5204-01	PSPH	ENST00000395471.3,ENST00000275605.3,ENST00000437355.2,ENST00000421626.1	chr7	56084969:56085072:56087292:56087427:56088765:56088924,	56087293	56087427	56087292	56087292	Splice_Site	C	-	p.R121_splice
GBM	TCGA-28-5204-01	PSPH	ENST00000427797.1	chr7	56084969:56085072:56087292:56087501:56088765:56088924,	56087293	56087501	56087292	56087292	Splice_Site	C	-	p.R121_splice
GBM	TCGA-28-5211-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000557005.1	chr14	64496612:64496777:64497733:64498075:64514717:64514873,	64497734	64498075	64497733	64497733	Splice_Site	G	A	p.E2294_splice
GBM	TCGA-28-5213-01	PFAS	ENST00000584044.1,ENST00000314666.6	chr17	8157483:8157619:8158344:8158450:8158819:8158842,	8158345	8158450	8158344	8158344	Splice_Site	G	A	p.R93_splice
GBM	TCGA-28-5213-01	FBXL12	ENST00000588922.1	chr19	9923906:9923950:9929220:9929293:9929403:9929492,9922225:9922393:9929220:9929293:9929403:9929492,9922225:9922393:9929220:9929293:9929429:9929461,	9929221	9929293	9929295	9929296	Splice_Site	-	G	p.R29_splice
GBM	TCGA-28-5219-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579699	7579699	Splice_Site	C	T	p.L32_splice
GBM	TCGA-32-1977-01	MCM6	ENST00000264156.2	chr2	136626180:136626430:136627820:136627931:136630266:136630413,	136627821	136627931	136627932	136627932	Splice_Site	C	G	p.R85_splice
GBM	TCGA-32-1979-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000513401.1,ENST00000514617.1,ENST00000507873.2,ENST00000512297.1	chr4	48533317:48533370:48536561:48536702:48537673:48537844,	48536562	48536702	48536560	48536560	Splice_Site	A	C	p.Q2235_splice
GBM	TCGA-32-1980-01	NF1	ENST00000358273.4,ENST00000479536.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29661855:29662049:29663350:29663491:29663652:29663891,	29663351	29663491	29663349	29663349	Splice_Site	A	G	p.I2003_splice
GBM	TCGA-32-2495-01	HSCB	ENST00000398941.2	chr22	29141851:29141996:29147228:29147276:29153065:29153198,29140602:29140697:29147228:29147276:29153065:29153198,	29147229	29147276	29147228	29147228	Splice_Site	G	A	p.A190_splice
GBM	TCGA-32-2615-01	FAF1	ENST00000545823.1,ENST00000396153.2,ENST00000494400.1,ENST00000371778.4	chr1	50957392:50957473:51001040:51001129:51005263:51005400,	51001041	51001129	51001131	51001131	Splice_Site	T	C	p.G469_splice
GBM	TCGA-32-4211-01	ACLY	ENST00000352035.2,ENST00000393896.2,ENST00000353196.1,ENST00000590151.1,ENST00000590735.1	chr17	40063694:40063825:40065241:40065321:40065762:40065953,	40065242	40065321	40065323	40065323	Splice_Site	T	G	p.E179_splice
GBM	TCGA-32-4211-01	PITX2	ENST00000511837.1,ENST00000394598.2,ENST00000354925.2	chr4	111542319:111542525:111553498:111553636:111554108:111554164,	111553499	111553636	111553638	111553638	Splice_Site	T	A	p.G16_splice
GBM	TCGA-41-3915-01	ST6GALNAC4	ENST00000361444.3,ENST00000335791.5,ENST00000343609.2	chr9	130672229:130672337:130674546:130674959:130676934:130677041,	130674547	130674959	130674960	130674960	Splice_Site	C	A	p.P67_splice
GBM	TCGA-74-6575-01	KIAA1324L	ENST00000394714.2,ENST00000297222.6,ENST00000444627.1,ENST00000450689.2,ENST00000416314.1	chr7	86509392:86509846:86521039:86521205:86522237:86522251,	86521040	86521205	86521207	86521207	Splice_Site	T	A	p.K955_splice
GBM	TCGA-74-6578-01	TXLNA	ENST00000373609.1,ENST00000373610.3	chr1	32646842:32647178:32650125:32650217:32653554:32653725,	32650126	32650217	32650218	32650218	Splice_Site	G	A	p.L199_splice
GBM	TCGA-76-4925-01	LAMTOR3	ENST00000226522.8,ENST00000515100.1,ENST00000499666.2	chr4	100802649:100803224:100805218:100805282:100806698:100806811,	100805219	100805282	100805284	100805284	Splice_Site	T	G	p.V80_splice
GBM	TCGA-76-4925-01	MTMR12	ENST00000382142.3,ENST00000280285.5,ENST00000264934.5	chr5	32248877:32248984:32255798:32255874:32263218:32263348,	32255799	32255874	32255876	32255876	Splice_Site	T	C	p.R238_splice
GBM	TCGA-76-4926-01	ARHGAP21	ENST00000446003.1,ENST00000493154.1,ENST00000376410.2,ENST00000320481.6,ENST00000396432.2,ENST00000486374.1	chr10	24890906:24891032:24893240:24893277:24896427:24896530,	24893241	24893277	24893240	24893240	Splice_Site	C	T	p.K907_splice
GBM	TCGA-76-4927-01	KHSRP	ENST00000595112.1,ENST00000595548.1,ENST00000398148.3,ENST00000595258.1	chr19	6420083:6420155:6420432:6420482:6421288:6421328,	6420433	6420482	6420483	6420483	Splice_Site	C	T	p.R142_splice
GBM	TCGA-76-4929-01	GAB4	ENST00000400588.1	chr22	17449187:17449273:17450832:17451083:17468849:17469006,	17450833	17451083	17450832	17450832	Splice_Site	C	T	p.A313_splice
GBM	TCGA-76-6193-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85460525:85460676:85466684:85466876:85492132:85492326,	85466685	85466876	85466877	85466877	Splice_Site	G	T	p.C963_splice
GBM	TCGA-76-6280-01	MAP2K3	ENST00000342679.4,ENST00000496046.1,ENST00000583508.1	chr17	21188133:21188281:21201724:21201791:21202189:21202238,	21201725	21201791	21201792	21201792	Splice_Site	G	A	p.T39_splice
GBM	TCGA-76-6280-01	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32362177:32362257:32366972:32367015:32368404:32368484,	32366973	32367015	32366971	32366971	Splice_Site	A	T	p.R498_splice
GBM	TCGA-76-6282-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000373272.2	chr20	39794089:39794191:39794278:39794466:39794833:39795034,	39794279	39794466	39794468	39794468	Splice_Site	T	C	p.W600_splice
GBM	TCGA-76-6283-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072508	60072512	Splice_Site	CTTAC	-	p.K727_splice
GBM	TCGA-76-6283-01	BNIP1	ENST00000231668.9,ENST00000351486.5	chr5	172581324:172581416:172585746:172585848:172586935:172587054,	172585747	172585848	172585746	172585746	Splice_Site	G	A	p.S133_splice
GBM	TCGA-76-6285-01	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000433979.1	chr12	18656214:18656351:18658225:18658395:18691089:18691246,	18658226	18658395	18658397	18658397	Splice_Site	T	C	p.R1067_splice
GBM	TCGA-76-6656-01	PTPRF	ENST00000372413.3,ENST00000412568.2,ENST00000496447.1,ENST00000372414.3,ENST00000372407.4,ENST00000438120.1,ENST00000429895.1,ENST00000359947.4,ENST00000422171.2,ENST00000414879.1	chr1	44085765:44085892:44086124:44086250:44086508:44086663,	44086125	44086250	44086251	44086251	Splice_Site	G	A	p.R1788_splice
GBM	TCGA-76-6657-01	METTL5	ENST00000392640.2,ENST00000409965.1,ENST00000260953.5,ENST00000410097.1,ENST00000409837.1	chr2	170668979:170669016:170677601:170677783:170678452:170678567,170676070:170676153:170677601:170677783:170678452:170678567,	170677602	170677783	170677785	170677785	Splice_Site	T	C	p.G75_splice
GBM	TCGA-81-5910-01	ANAPC4	ENST00000510092.1,ENST00000315368.3	chr4	25415270:25415364:25415945:25416007:25416087:25416126,	25415946	25416007	25416009	25416009	Splice_Site	T	C	p.S562_splice
GBM	TCGA-87-5896-01	SRSF5	ENST00000556587.1	chr14	70237183:70237257:70237711:70237822:70237910:70237974,70237183:70237257:70237711:70237822:70237913:70238722,	70237712	70237822	70237710	70237710	Splice_Site	A	T	p.G147_splice
GBM	TCGA-87-5896-01	SERPINB11	ENST00000536691.1	chr18	61379798:61379927:61387246:61387389:61388064:61388220,	61387247	61387389	61387390	61387390	Splice_Site	G	A	p.E205_splice
HNSC	TCGA-HD-7754-01	WDPCP	ENST00000409562.3,ENST00000409354.2,ENST00000272321.7,ENST00000398544.3,ENST00000409120.1,ENST00000409199.1	chr2	63540382:63540446:63605520:63605644:63609040:63609209,	63605521	63605644	63605643	63605645	Splice_Site	TGC	-	p.350_splice
HNSC	TCGA-F7-A624-01	PKD1	ENST00000564313.1	chr16	2140765:2140809:2140884:2141175:2141781:2141855,	2140885	2141175	2140883	2140886	Splice_Site	ACCT	-	p.I4001_splice
HNSC	TCGA-CR-5247-01	SPOCD1	ENST00000528579.1,ENST00000532604.1,ENST00000473361.1	chr1	32259827:32259836:32263807:32263924:32264042:32264202,	32263808	32263924	32263807	32263824	Splice_Site	CCCTTTTCTCCTCCTGGT	-	p.DQEEKRG710_splice
HNSC	TCGA-P3-A6T7-01	LEF1	ENST00000379951.2,ENST00000505379.1	chr4	108969794:108969907:108985491:108985540:108991818:108991926,	108985492	108985540	108985490	108985500	Splice_Site	ACCTGATGCAG	-	p.358_splice
HNSC	TCGA-CN-4723-01	DDX3X	ENST00000457138.2	chrX	41193426:41193550:41196660:41196718:41200736:41200869,	41196661	41196718	41196718	41196719	Splice_Site	-	G	p.K35_splice
HNSC	TCGA-CN-A642-01	NLRC5	ENST00000534927.1,ENST00000262510.6,ENST00000540182.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57110730:57110814:57111207:57111291:57111630:57111714,	57111208	57111291	57111290	57111293	Splice_Site	GAGT	-	p.1640_splice
HNSC	TCGA-UF-A719-01	LSR	ENST00000605618.1,ENST00000361790.3,ENST00000427250.1,ENST00000354900.3,ENST00000360798.3	chr19	35757398:35757435:35757581:35757641:35757741:35757870,35757398:35757435:35757581:35757641:35757738:35757870,	35757582	35757641	35757581	35757582	Splice_Site	GC	-	p.A347_splice
HNSC	TCGA-BA-4076-01	EIF6	ENST00000374443.3,ENST00000374436.3,ENST00000447927.2,ENST00000440766.1,ENST00000374450.3	chr20	33866713:33867009:33867368:33867550:33867744:33867761,	33867369	33867550	33867551	33867551	Splice_Site	C	T	p.A183_splice
HNSC	TCGA-BA-4076-01	MFN1	ENST00000480636.1,ENST00000263969.5,ENST00000471841.1	chr3	179094917:179094956:179095131:179095236:179103356:179103509,179094917:179094956:179095131:179095236:179096128:179096231,	179095132	179095236	179095131	179095131	Splice_Site	G	A	p.V409_splice
HNSC	TCGA-BA-4077-01	SPAG7	ENST00000573366.1,ENST00000206020.3,ENST00000575142.1	chr17	4863316:4863406:4863528:4863613:4863753:4863842,	4863529	4863613	4863614	4863614	Splice_Site	C	A	p.L81_splice
HNSC	TCGA-BA-4077-01	EIF1	ENST00000591776.1	chr17	39846342:39846441:39847033:39847071:39847154:39847464,	39847034	39847071	39847033	39847033	Splice_Site	G	A	p.I100_splice
HNSC	TCGA-BA-4078-01	CYP4A22	ENST00000485117.1,ENST00000294337.3,ENST00000371891.3	chr1	47608940:47609065:47609433:47609588:47610028:47610135,	47609434	47609588	47609432	47609432	Splice_Site	A	C	p.R212_splice
HNSC	TCGA-BA-4078-01	ACTR5	ENST00000243903.4	chr20	37394044:37394161:37394880:37395020:37396106:37396239,	37394881	37395020	37395021	37395021	Splice_Site	G	A	p.R478_splice
HNSC	TCGA-BA-4078-01	PDCD10	ENST00000481136.1,ENST00000497056.2	chr3	167422629:167422683:167437849:167438061:167443188:167443261,167422629:167422683:167437849:167438061:167452593:167452620,	167437850	167438061	167437849	167437849	Splice_Site	C	T	p.E32_splice
HNSC	TCGA-BA-5151-01	CHRD	ENST00000470150.1,ENST00000204604.1,ENST00000460627.1,ENST00000448472.1,ENST00000450923.1,ENST00000545352.1,ENST00000420973.1	chr3	184101099:184101206:184101310:184101430:184102324:184102481,	184101311	184101430	184101432	184101432	Splice_Site	T	C	p.T480_splice
HNSC	TCGA-BA-5152-01	JAKMIP3	ENST00000298622.4	chr10	133930580:133931078:133946815:133947031:133948544:133948664,	133946816	133947031	133946815	133946815	Splice_Site	G	C	p.M212_splice
HNSC	TCGA-BA-5152-01	YTHDF1	ENST00000370334.4	chr20	61845215:61845295:61846928:61846953:61847217:61847491,	61846929	61846953	61846954	61846954	Splice_Site	C	G	p.R10_splice
HNSC	TCGA-BA-5557-01	ERAP2	ENST00000437043.3,ENST00000510309.1,ENST00000510373.1,ENST00000513084.1	chr5	96219495:96219634:96222358:96222493:96224888:96225009,	96222359	96222493	96222495	96222495	Splice_Site	T	A	p.K283_splice
HNSC	TCGA-BA-5558-01	CBX3	ENST00000396386.2,ENST00000409747.1,ENST00000337620.4,ENST00000481057.1	chr7	26248085:26248175:26251281:26251376:26251701:26252043,	26251282	26251376	26251377	26251377	Splice_Site	G	C	p.W142_splice
HNSC	TCGA-BA-6868-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000440600.2	chr1	212118125:212118311:212119948:212120047:212125910:212126043,	212119949	212120047	212120048	212120048	Splice_Site	C	T	p.H773_splice
HNSC	TCGA-BA-6869-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93163416:93163542:93167697:93167772:93168951:93169176,	93167698	93167772	93167773	93167773	Splice_Site	C	A	p.A233_splice
HNSC	TCGA-BA-6869-01	UHRF1BP1L	ENST00000279907.7,ENST00000356828.3	chr12	100491142:100491283:100492129:100492319:100496543:100496635,	100492130	100492319	100492321	100492321	Splice_Site	T	C	p.S113_splice
HNSC	TCGA-BA-6869-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000305126.8,ENST00000442011.2	chr5	135369451:135369550:135379746:135379811:135382023:135382129,	135379747	135379811	135379745	135379745	Splice_Site	A	G	p.T78_splice
HNSC	TCGA-BA-6869-01	SLC17A1	ENST00000377886.2,ENST00000476801.1,ENST00000427328.1	chr6	25826688:25826861:25830751:25830835:25832221:25832224,	25830752	25830835	25830751	25830751	Splice_Site	C	T	p.V12_splice
HNSC	TCGA-BA-6869-01	TPD52	ENST00000379096.5,ENST00000518937.1,ENST00000521241.2	chr8	80965516:80965665:80976712:80976828:80992549:80992593,80965516:80965665:80976712:80976828:81032049:81032119,80965516:80965665:80976712:80976828:81083659:81083706,	80976713	80976828	80976829	80976829	Splice_Site	C	A	p.G47_splice
HNSC	TCGA-BA-6870-01	PDE9A	ENST00000335440.6,ENST00000468805.1,ENST00000380328.2,ENST00000349112.3	chr21	44119077:44119121:44153465:44153536:44163885:44163970,	44153466	44153536	44153465	44153465	Splice_Site	G	A	p.R166_splice
HNSC	TCGA-BA-6871-01	UBE4A	ENST00000545354.1,ENST00000252108.3,ENST00000431736.2	chr11	118257152:118257327:118260439:118260620:118261371:118261519,	118260440	118260620	118260439	118260439	Splice_Site	G	A	p.E863_splice
HNSC	TCGA-BA-6871-01	STAT2	ENST00000314128.4,ENST00000418572.2,ENST00000557235.1	chr12	56743372:56743420:56743880:56743974:56744195:56744216,	56743881	56743974	56743976	56743977	Splice_Site	TG	AA	p.G372_splice
HNSC	TCGA-BB-4223-01	CASZ1	ENST00000377022.3,ENST00000496432.2,ENST00000344008.5	chr1	10714475:10714648:10715705:10715870:10716702:10716793,	10715706	10715870	10715871	10715871	Splice_Site	C	T	p.R501_splice
HNSC	TCGA-BB-4223-01	TMEM231	ENST00000562410.1,ENST00000568377.1,ENST00000569294.1,ENST00000258173.6	chr16	75576499:75576581:75579249:75579393:75579723:75579852,	75579250	75579393	75579249	75579249	Splice_Site	C	T	p.N194_splice
HNSC	TCGA-BB-4224-01	TDO2	ENST00000509738.1,ENST00000536354.2	chr4	156824846:156824945:156825169:156825275:156826218:156826308,	156825170	156825275	156825277	156825277	Splice_Site	T	C	p.H47_splice
HNSC	TCGA-BB-4225-01	ACOXL	ENST00000439055.1,ENST00000417074.1,ENST00000389811.4	chr2	111598947:111598982:111666365:111666482:111691065:111691219,	111666366	111666482	111666365	111666365	Splice_Site	G	A	p.S263_splice
HNSC	TCGA-CN-4723-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28802618:28802803:28806962:28807116:28815681:28815737,	28806963	28807116	28806962	28806962	Splice_Site	G	A	p.S536_splice
HNSC	TCGA-CN-4723-01	MCM3	ENST00000596288.1,ENST00000419835.2,ENST00000421471.1,ENST00000229854.7	chr6	52132662:52132766:52133883:52134024:52137098:52137249,	52133884	52134024	52133882	52133882	Splice_Site	A	G	p.K656_splice
HNSC	TCGA-CN-4725-01	ST3GAL1	ENST00000319914.5,ENST00000399640.2,ENST00000521180.1,ENST00000522652.1	chr8	134471187:134472180:134474117:134474237:134475656:134475702,	134474118	134474237	134474117	134474117	Splice_Site	C	A	p.E283_splice
HNSC	TCGA-CN-4726-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579310	7579310	Splice_Site	A	T	p.T125_splice
HNSC	TCGA-CN-4726-01	PTK2	ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000521059.1,ENST00000340930.3,ENST00000395218.2,ENST00000522684.1,ENST00000521791.1,ENST00000519993.1,ENST00000535192.1	chr8	141840574:141840625:141856358:141856421:141856697:141856777,	141856359	141856421	141856357	141856357	Splice_Site	A	G	p.E198_splice
HNSC	TCGA-CN-4727-01	DNM3	ENST00000355305.5,ENST00000358155.4,ENST00000367731.1	chr1	172356327:172356499:172357712:172357949:172376911:172377494,	172357713	172357949	172357712	172357712	Splice_Site	G	T	p.R762_splice
HNSC	TCGA-CN-4727-01	ZDHHC16	ENST00000370854.3,ENST00000487315.1,ENST00000353979.3,ENST00000370842.2,ENST00000466895.1,ENST00000345745.5,ENST00000420089.1,ENST00000417044.1,ENST00000370846.4,ENST00000459777.1,ENST00000393760.1,ENST00000352634.4,ENST00000495735.1	chr10	99215473:99215540:99215730:99215801:99216533:99216681,	99215731	99215801	99215802	99215802	Splice_Site	G	C	p.R340_splice
HNSC	TCGA-CN-4727-01	TDRD9	ENST00000557332.1,ENST00000409874.4,ENST00000339063.5	chr14	104473496:104473541:104474749:104474803:104481061:104481178,	104474750	104474803	104474748	104474748	Splice_Site	A	C	p.D685_splice
HNSC	TCGA-CN-4727-01	MEIS2	ENST00000560617.1	chr15	37387764:37387815:37388489:37388631:37390167:37390400,37387764:37387815:37388489:37388631:37389471:37389568,	37388490	37388631	37388489	37388489	Splice_Site	C	A	p.Q129_splice
HNSC	TCGA-CN-4727-01	MEIS2	ENST00000558313.1,ENST00000397620.2,ENST00000397624.3	chr15	37387764:37387815:37388489:37388608:37390167:37390400,	37388490	37388608	37388489	37388489	Splice_Site	C	A	p.Q129_splice
HNSC	TCGA-CN-4727-01	ETFA	ENST00000560044.1	chr15	76584959:76585041:76587931:76588078:76603690:76603737,76584771:76584854:76587931:76588078:76603690:76603737,76584771:76584854:76587931:76588078:76602272:76602405,76584959:76585041:76587931:76588078:76602272:76602405,	76587932	76588078	76588079	76588079	Splice_Site	C	A	p.A14_splice
HNSC	TCGA-CN-4727-01	GAB4	ENST00000400588.1	chr22	17449187:17449273:17450832:17451083:17468849:17469006,	17450833	17451083	17451084	17451084	Splice_Site	C	G	p.R229_splice
HNSC	TCGA-CN-4727-01	BET1	ENST00000222547.3,ENST00000425626.1,ENST00000433727.1	chr7	93625576:93625633:93628481:93628606:93633509:93633667,	93628482	93628606	93628607	93628607	Splice_Site	C	A	p.G7_splice
HNSC	TCGA-CN-4729-01	PEX11A	ENST00000561224.1	chr15	90226310:90227086:90229661:90229777:90233807:90233893,90226481:90227179:90229661:90229777:90233807:90233893,90224535:90224771:90229661:90229777:90233807:90233893,	90229662	90229777	90229778	90229778	Splice_Site	C	G	p.R19_splice
HNSC	TCGA-CN-4730-01	GPD1	ENST00000301149.3,ENST00000550172.1,ENST00000547190.1,ENST00000548814.1	chr12	50499399:50499471:50500070:50500209:50500587:50500699,	50500071	50500209	50500210	50500210	Splice_Site	G	C	p.G167_splice
HNSC	TCGA-CN-4730-01	CES1	ENST00000360526.3,ENST00000361503.4	chr16	55844841:55844919:55846814:55846955:55850835:55850850,55844838:55844922:55846814:55846955:55850835:55850850,	55846815	55846955	55846957	55846957	Splice_Site	T	A	p.S315_splice
HNSC	TCGA-CN-4739-01	NEK6	ENST00000545174.1,ENST00000373603.1,ENST00000444973.1,ENST00000394199.2,ENST00000546191.1,ENST00000373600.3,ENST00000540326.1,ENST00000425237.1,ENST00000539416.1,ENST00000454453.1,ENST00000422297.1,ENST00000320246.5	chr9	127088608:127088717:127089616:127089724:127101849:127101886,	127089617	127089724	127089616	127089616	Splice_Site	G	A	p.D172_splice
HNSC	TCGA-CN-4740-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579591	7579591	Splice_Site	C	T	p.S33_splice
HNSC	TCGA-CN-5356-01	CPB1	ENST00000484877.1,ENST00000282957.4,ENST00000491148.1	chr3	148558472:148558572:148558660:148558762:148559609:148559622,	148558661	148558762	148558763	148558763	Splice_Site	G	T	p.K158_splice
HNSC	TCGA-CN-5356-01	CPB1	ENST00000465718.1	chr3	148552284:148552409:148558472:148558762:148559609:148559622,	148558473	148558762	148558763	148558763	Splice_Site	G	T	p.K158_splice
HNSC	TCGA-CN-5356-01	PDE8B	ENST00000340978.3,ENST00000333194.4,ENST00000346042.3,ENST00000505926.1,ENST00000264917.5	chr5	76506783:76507089:76607818:76607878:76621363:76621554,	76607819	76607878	76607880	76607880	Splice_Site	T	A	p.Q133_splice
HNSC	TCGA-CN-5356-01	MOG	ENST00000396701.2	chr6	29635680:29635701:29638477:29638498:29639198:29639495,	29638478	29638498	29638476	29638476	Splice_Site	A	G	p.G237_splice
HNSC	TCGA-CN-5359-01	TFEC	ENST00000484212.1	chr7	115614223:115614310:115624315:115624567:115750761:115750980,	115624316	115624567	115624314	115624314	Splice_Site	A	G	p.H60_splice
HNSC	TCGA-CN-5359-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98232094:98232213:98238315:98238441:98239040:98239139,	98238316	98238441	98238315	98238315	Splice_Site	C	A	p.Q576_splice
HNSC	TCGA-CN-5360-01	RAB34	ENST00000484161.1,ENST00000395242.2,ENST00000395243.3,ENST00000583538.1,ENST00000395245.3,ENST00000301043.6,ENST00000447716.1,ENST00000430132.2,ENST00000436730.3,ENST00000415040.2,ENST00000450529.1	chr17	27041690:27041728:27041810:27041918:27042049:27042140,	27041811	27041918	27041920	27041920	Splice_Site	T	A	p.G202_splice
HNSC	TCGA-CN-5360-01	TRIM24	ENST00000343526.4,ENST00000415680.2	chr7	138258251:138258387:138261117:138261190:138262164:138262333,	138261118	138261190	138261116	138261116	Splice_Site	A	T	p.G672_splice
HNSC	TCGA-CN-5360-01	C9orf135	ENST00000480564.1,ENST00000527647.1	chr9	72435875:72435947:72459432:72459541:72471470:72471589,	72459433	72459541	72459432	72459432	Splice_Site	G	T	p.W51_splice
HNSC	TCGA-CN-5363-01	STK38L	ENST00000539577.1,ENST00000389032.3,ENST00000407753.2	chr12	27467495:27467591:27467947:27468050:27468221:27468283,	27467948	27468050	27467947	27467947	Splice_Site	G	A	p.G225_splice
HNSC	TCGA-CN-5363-01	SEC23A	ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39514366:39514528:39517855:39517933:39524346:39524500,	39517856	39517933	39517935	39517935	Splice_Site	T	A	p.C554_splice
HNSC	TCGA-CN-5363-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000561069.1	chr15	29385283:29385423:29386480:29386516:29390692:29390779,	29386481	29386516	29386517	29386517	Splice_Site	G	T	p.A417_splice
HNSC	TCGA-CN-5363-01	CTTNBP2	ENST00000446636.1,ENST00000160373.3,ENST00000441556.1	chr7	117400488:117400764:117407112:117407230:117417564:117417819,	117407113	117407230	117407111	117407111	Splice_Site	A	C	p.N966_splice
HNSC	TCGA-CN-5365-01	GSTM2	ENST00000464206.1,ENST00000460717.3,ENST00000476040.2,ENST00000241337.4,ENST00000369829.2,ENST00000369831.2,ENST00000467579.3,ENST00000369827.3,ENST00000568786.1,ENST00000442650.1	chr1	110211046:110211122:110211546:110211611:110211911:110211993,	110211547	110211611	110211613	110211613	Splice_Site	T	A	p.N59_splice
HNSC	TCGA-CN-5367-01	CLDN15	ENST00000414035.1	chr7	100875884:100876001:100876113:100876195:100877558:100877654,100875884:100876001:100876113:100876195:100880645:100880758,	100876114	100876195	100876196	100876196	Splice_Site	C	A	p.G128_splice
HNSC	TCGA-CN-5369-01	ZC3H3	ENST00000262577.5	chr8	144523105:144523290:144547886:144548018:144550378:144550448,	144547887	144548018	144548019	144548019	Splice_Site	C	T	p.M726_splice
HNSC	TCGA-CN-5370-01	CBWD1	ENST00000431099.2,ENST00000382447.4,ENST00000498044.2,ENST00000377447.3,ENST00000356521.4,ENST00000314367.10,ENST00000377400.4,ENST00000465014.2	chr9	162431:162469:163977:164037:172080:172172,	163978	164037	164038	164038	Splice_Site	C	G	p.G144_splice
HNSC	TCGA-CN-6010-01	POSTN	ENST00000473823.1,ENST00000379749.4,ENST00000541179.1	chr13	38137469:38137507:38138655:38138697:38143880:38143927,	38138656	38138697	38138655	38138655	Splice_Site	C	T	p.G825_splice
HNSC	TCGA-CN-6010-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63509383	63509383	Splice_Site	A	T	p.A78_splice
HNSC	TCGA-CN-6011-01	AADAT	ENST00000353187.2,ENST00000515480.1,ENST00000337664.4,ENST00000509167.1	chr4	170988477:170988539:170989741:170989838:170990298:170990381,	170989742	170989838	170989840	170989840	Splice_Site	T	G	p.G268_splice
HNSC	TCGA-CN-6012-01	SH3GL1	ENST00000417295.2,ENST00000598564.1	chr19	4366499:4366570:4366922:4366991:4400320:4400415,	4366923	4366991	4366921	4366921	Splice_Site	A	G	p.K38_splice
HNSC	TCGA-CN-6019-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574034	7574034	Splice_Site	C	A	p.I332_splice
HNSC	TCGA-CN-6022-01	DPEP3	ENST00000268793.4	chr16	68011172:68011257:68011555:68011732:68011840:68011910,	68011556	68011732	68011733	68011733	Splice_Site	C	G	p.K278_splice
HNSC	TCGA-CN-6022-01	CEP76	ENST00000592660.1,ENST00000585751.1,ENST00000262127.2,ENST00000593250.1,ENST00000590143.1	chr18	12695252:12695350:12697221:12697407:12698977:12699122,	12697222	12697407	12697408	12697408	Splice_Site	C	T	p.G174_splice
HNSC	TCGA-CN-6023-01	DYNLRB2	ENST00000305904.6,ENST00000562982.1	chr16	80577176:80577248:80583380:80583548:80584411:80584657,	80583381	80583548	80583380	80583380	Splice_Site	G	C	p.G27_splice
HNSC	TCGA-CN-6023-01	MASP1	ENST00000392470.2,ENST00000425937.1	chr3	186980501:186980508:187003612:187003844:187009415:187009485,186980501:186980508:187003612:187003844:187009032:187009138,	187003613	187003844	187003846	187003846	Splice_Site	T	A	p.R2_splice
HNSC	TCGA-CN-6024-01	CDK5RAP1	ENST00000477105.1,ENST00000473997.1,ENST00000471264.1,ENST00000346416.2,ENST00000544843.1	chr20	31961945:31962018:31967266:31967497:31973455:31973576,	31967267	31967497	31967498	31967498	Splice_Site	C	G	p.G307_splice
HNSC	TCGA-CN-6988-01	UGT2B28	ENST00000335568.5	chr4	70155382:70155470:70156309:70156529:70160247:70160768,	70156310	70156529	70156309	70156309	Splice_Site	G	A	p.G364_splice
HNSC	TCGA-CN-6989-01	SLC4A8	ENST00000358657.3,ENST00000604314.1,ENST00000453097.2,ENST00000551071.1,ENST00000319957.6	chr12	51882482:51882644:51883483:51883735:51887487:51887556,	51883484	51883735	51883736	51883736	Splice_Site	G	A	p.K900_splice
HNSC	TCGA-CN-6992-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000491769.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238234215:238234367:238242092:238242191:238243268:238243429,	238242093	238242191	238242092	238242092	Splice_Site	C	T	p.D3110_splice
HNSC	TCGA-CN-6995-01	ITGAL	ENST00000356798.6	chr16	30490411:30490529:30490651:30490782:30492759:30492905,	30490652	30490782	30490651	30490651	Splice_Site	G	A	p.E149_splice
HNSC	TCGA-CN-6995-01	SEC14L4	ENST00000321205.5,ENST00000255858.7,ENST00000540456.1	chr22	30884899:30886233:30887559:30887729:30887820:30887960,	30887560	30887729	30887558	30887558	Splice_Site	A	G	p.Y361_splice
HNSC	TCGA-CN-6997-01	TUSC3	ENST00000510836.1	chr8	15531271:15531345:15601046:15601121:15605883:15605974,15531271:15531345:15601046:15601121:15621711:15621927,	15601047	15601121	15601046	15601046	Splice_Site	G	T	p.N288_splice
HNSC	TCGA-CQ-5324-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005729	150005729	Splice_Site	C	T	p.G166_splice
HNSC	TCGA-CQ-5326-01	SORL1	ENST00000532694.1,ENST00000525532.1,ENST00000534286.1,ENST00000527934.1,ENST00000260197.7	chr11	121477894:121477999:121478812:121478885:121481784:121481867,	121478813	121478885	121478812	121478812	Splice_Site	G	A	p.V1723_splice
HNSC	TCGA-CQ-5326-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579698	7579698	Splice_Site	A	C	p.L32_splice
HNSC	TCGA-CQ-5329-01	SATB2	ENST00000457245.1,ENST00000417098.1,ENST00000260926.5	chr2	200246416:200246543:200298060:200298237:200320591:200320819,	200298061	200298237	200298060	200298060	Splice_Site	C	A	p.G116_splice
HNSC	TCGA-CQ-5331-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576927	7576927	Splice_Site	C	G	p.A307_splice
HNSC	TCGA-CQ-6218-01	UAP1	ENST00000271469.3	chr1	162531511:162531567:162535801:162536138:162546566:162546771,	162535802	162536138	162536139	162536139	Splice_Site	G	T	p.G94_splice
HNSC	TCGA-CQ-6218-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21878009:21878147:21881071:21881155:21882459:21882577,	21881072	21881155	21881157	21881157	Splice_Site	T	C	p.D436_splice
HNSC	TCGA-CQ-6220-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000399357.3,ENST00000405358.4,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000438956.1,ENST00000343495.5	chr7	13949256:13949325:13950863:13950932:13971126:13971374,	13950864	13950932	13950933	13950933	Splice_Site	C	G	p.E268_splice
HNSC	TCGA-CQ-6221-01	BRD4	ENST00000263377.2	chr19	15355041:15355411:15355520:15355573:15364962:15365073,	15355521	15355573	15355574	15355574	Splice_Site	C	T	p.E720_splice
HNSC	TCGA-CQ-6221-01	FAM193A	ENST00000512465.1,ENST00000382839.3,ENST00000502458.1	chr4	2701406:2702271:2717749:2717831:2733501:2733616,	2717750	2717831	2717749	2717749	Splice_Site	G	C	p.D1208_splice
HNSC	TCGA-CQ-6223-01	CSNK1A1	ENST00000504676.1,ENST00000261798.5,ENST00000377843.2	chr5	148892632:148892772:148899852:148899951:148904607:148904734,	148899853	148899951	148899953	148899953	Splice_Site	T	C	p.M120_splice
HNSC	TCGA-CQ-6225-01	BCAS3	ENST00000407086.3,ENST00000588462.1,ENST00000408905.3,ENST00000390652.5,ENST00000589222.1	chr17	58952022:58952099:58967055:58967132:58979980:58980064,	58967056	58967132	58967054	58967054	Splice_Site	A	G	p.S221_splice
HNSC	TCGA-CQ-6225-01	RBCK1	ENST00000382214.3,ENST00000356286.5,ENST00000468272.1,ENST00000382181.2,ENST00000353660.3,ENST00000415942.1	chr20	402797:402882:407956:408136:409134:409233,	407957	408136	408138	408138	Splice_Site	T	C	p.K403_splice
HNSC	TCGA-CQ-6228-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000479049.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71896734:71896876:71901326:71901426:71906186:71906365,	71901327	71901426	71901427	71901427	Splice_Site	G	A	p.G1923_splice
HNSC	TCGA-CQ-6228-01	NRCAM	ENST00000418239.1,ENST00000379024.4,ENST00000379028.3,ENST00000442580.1	chr7	107875073:107875132:107880402:107880614:107953108:107953175,107878195:107878213:107880402:107880614:107953108:107953175,	107880403	107880614	107880402	107880402	Splice_Site	C	T	p.P36_splice
HNSC	TCGA-CR-6481-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50090040:50090166:50090686:50091251:50092815:50092866,	50090687	50091251	50091252	50091252	Splice_Site	G	A	p.A476_splice
HNSC	TCGA-CR-6487-01	SMAD1	ENST00000515385.1,ENST00000394092.2,ENST00000302085.4	chr4	146463733:146463850:146467854:146468076:146474935:146475069,	146467855	146468076	146467854	146467854	Splice_Site	G	A	p.D259_splice
HNSC	TCGA-CR-6491-01	WAC	ENST00000442148.1,ENST00000424454.1,ENST00000375664.4,ENST00000354911.4,ENST00000375646.1,ENST00000428935.1,ENST00000347934.4,ENST00000420266.1,ENST00000345541.6,ENST00000414108.1,ENST00000439676.1	chr10	28824614:28824686:28872327:28872434:28878664:28878780,	28872328	28872434	28872436	28872436	Splice_Site	T	G	p.A127_splice
HNSC	TCGA-CR-7364-01	SFTPA1	ENST00000372308.3,ENST00000419470.2,ENST00000429958.1,ENST00000439264.1,ENST00000428376.2,ENST00000398636.3	chr10	81371564:81371753:81372067:81372187:81372944:81373022,	81372068	81372187	81372067	81372067	Splice_Site	G	T	p.G58_splice
HNSC	TCGA-CR-7364-01	ARFGAP2	ENST00000395449.3,ENST00000525398.1,ENST00000528708.1,ENST00000528444.1,ENST00000525314.1,ENST00000524782.1,ENST00000419701.2,ENST00000533939.1,ENST00000529439.1,ENST00000530794.1,ENST00000524727.1,ENST00000531750.1,ENST00000529455.1,ENST00000529599.1,ENST00000527097.1	chr11	47193309:47193351:47197401:47197474:47198066:47198185,47193862:47193884:47197401:47197474:47198066:47198185,47196732:47196864:47197401:47197474:47198066:47198185,	47197402	47197474	47197400	47197400	Splice_Site	A	T	p.A88_splice
HNSC	TCGA-CR-7364-01	PMS2	ENST00000382321.4,ENST00000406569.3,ENST00000265849.7	chr7	6038738:6038906:6042083:6042267:6043602:6043637,6038738:6038906:6042083:6042267:6043320:6043423,	6042084	6042267	6042083	6042083	Splice_Site	C	T	p.K179_splice
HNSC	TCGA-CR-7365-01	DOCK9	ENST00000339416.2,ENST00000376460.1	chr13	99489747:99489863:99498177:99498245:99500845:99500893,	99498178	99498245	99498246	99498246	Splice_Site	C	G	p.R1355_splice
HNSC	TCGA-CR-7367-01	CTNND1	ENST00000361332.4,ENST00000399050.4,ENST00000530094.1,ENST00000527467.1,ENST00000415361.2,ENST00000526357.1,ENST00000532844.1,ENST00000531014.1	chr11	57581782:57581845:57582865:57582972:57583768:57584189,57581782:57581845:57582865:57582972:57583386:57583473,	57582866	57582972	57582974	57582974	Splice_Site	T	C	p.M936_splice
HNSC	TCGA-CR-7368-01	NFYC	ENST00000372654.1,ENST00000440226.3,ENST00000372653.1,ENST00000447388.3,ENST00000427410.2,ENST00000372651.1	chr1	41232267:41232375:41235027:41235087:41236380:41236612,	41235028	41235087	41235027	41235027	Splice_Site	G	A	p.I296_splice
HNSC	TCGA-CR-7368-01	ACER3	ENST00000527508.1	chr11	76701582:76701618:76709806:76709865:76722373:76722419,	76709807	76709865	76709867	76709867	Splice_Site	T	C	p.W166_splice
HNSC	TCGA-CR-7368-01	ACADVL	ENST00000542255.2,ENST00000356839.5,ENST00000583850.1,ENST00000543245.2,ENST00000322910.5,ENST00000579546.1,ENST00000350303.5,ENST00000583858.1	chr17	7127005:7127049:7127131:7127194:7127286:7127388,	7127132	7127194	7127131	7127131	Splice_Site	G	A	p.E424_splice
HNSC	TCGA-CR-7368-01	ACADVL	ENST00000585203.2	chr17	7127005:7127049:7127131:7127177:7127286:7127388,	7127132	7127177	7127131	7127131	Splice_Site	G	A	p.E424_splice
HNSC	TCGA-CR-7368-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44833910:44833960:44870205:44870264:44879854:44879975,	44870206	44870264	44870205	44870205	Splice_Site	G	A	p.N129_splice
HNSC	TCGA-CR-7371-01	HSPG2	ENST00000374695.3	chr1	22156485:22156584:22157474:22157583:22157707:22157817,	22157475	22157583	22157584	22157584	Splice_Site	C	G	p.N3855_splice
HNSC	TCGA-CR-7371-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100934449:100934596:100955662:100955776:100957028:100957267,	100955663	100955776	100955661	100955661	Splice_Site	A	T	p.G370_splice
HNSC	TCGA-CR-7371-01	MOCOS	ENST00000261326.5	chr18	33800017:33800180:33828884:33828963:33831121:33831246,	33828885	33828963	33828964	33828964	Splice_Site	G	T	p.R680_splice
HNSC	TCGA-CR-7371-01	GRAMD4	ENST00000361034.3,ENST00000406902.1	chr22	47022657:47022858:47033736:47033857:47054083:47054204,	47033737	47033857	47033858	47033858	Splice_Site	G	T	p.Q95_splice
HNSC	TCGA-CR-7371-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47703823:47704082:47712147:47712207:47716964:47717060,	47712148	47712207	47712147	47712147	Splice_Site	C	A	p.E633_splice
HNSC	TCGA-CR-7371-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104031984:104032168:104035611:104035709:104037733:104037846,	104035612	104035709	104035710	104035710	Splice_Site	C	T	p.E2481_splice
HNSC	TCGA-CR-7374-01	DPP10	ENST00000429914.1,ENST00000486885.1,ENST00000393147.2,ENST00000409163.1,ENST00000393146.2,ENST00000410059.1,ENST00000310323.8,ENST00000461250.1,ENST00000419287.1	chr2	116101392:116101488:116257085:116257180:116283473:116283548,	116257086	116257180	116257182	116257182	Splice_Site	T	A	p.F122_splice
HNSC	TCGA-CR-7377-01	TMEM106B	ENST00000396668.3,ENST00000396667.3,ENST00000444443.1	chr7	12254434:12254653:12258083:12258147:12263851:12263900,	12258084	12258147	12258148	12258148	Splice_Site	G	A	p.T94_splice
HNSC	TCGA-CR-7383-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	T	p.Q331_splice
HNSC	TCGA-CR-7385-01	SEZ6L2	ENST00000537485.1,ENST00000350527.3,ENST00000308713.5,ENST00000346932.5	chr16	29884858:29885050:29888076:29888271:29888591:29888788,	29888077	29888271	29888272	29888272	Splice_Site	C	T	p.E637_splice
HNSC	TCGA-CR-7388-01	HMGCL	ENST00000496907.1,ENST00000374487.2,ENST00000374490.3,ENST00000374483.4	chr1	24134624:24134813:24137225:24137289:24140679:24140811,	24137226	24137289	24137224	24137224	Splice_Site	A	C	p.E187_splice
HNSC	TCGA-CR-7388-01	POSTN	ENST00000379742.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4	chr13	38139384:38139633:38143436:38143520:38143880:38143927,38138655:38138697:38143436:38143520:38143880:38143927,	38143437	38143520	38143521	38143521	Splice_Site	C	T	p.E783_splice
HNSC	TCGA-CR-7388-01	NMI	ENST00000243346.5	chr2	152135341:152135504:152138461:152138557:152139381:152139468,	152138462	152138557	152138558	152138558	Splice_Site	C	T	p.G28_splice
HNSC	TCGA-CR-7388-01	FOXK1	ENST00000446823.1,ENST00000328914.4	chr7	4794867:4795014:4796624:4796818:4798681:4798848,	4796625	4796818	4796623	4796623	Splice_Site	A	G	p.N351_splice
HNSC	TCGA-CR-7390-01	ITGA2	ENST00000503810.2,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52374601:52374704:52376340:52376451:52377421:52377526,	52376341	52376451	52376453	52376453	Splice_Site	T	C	p.K1013_splice
HNSC	TCGA-CR-7394-01	CASP8	ENST00000432109.2,ENST00000358485.4,ENST00000339403.6	chr2	202137360:202137499:202137620:202137665:202141549:202141627,202137360:202137499:202137620:202137665:202139611:202139676,	202137621	202137665	202137620	202137620	Splice_Site	G	C	p.E184_splice
HNSC	TCGA-CR-7394-01	SNRK	ENST00000429705.2,ENST00000437827.1,ENST00000454177.1,ENST00000296088.7	chr3	43373660:43373802:43381778:43381991:43384835:43384970,	43381779	43381991	43381993	43381993	Splice_Site	T	C	p.E315_splice
HNSC	TCGA-CR-7395-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46231280:46231490:46233111:46233279:46240638:46240720,	46233112	46233279	46233280	46233280	Splice_Site	G	A	p.A500_splice
HNSC	TCGA-CR-7395-01	ARID2	ENST00000444670.1	chr12	46231280:46231490:46233168:46233279:46240638:46240720,	46233169	46233279	46233280	46233280	Splice_Site	G	A	p.A500_splice
HNSC	TCGA-CR-7398-01	ODAM	ENST00000396094.2,ENST00000510847.1,ENST00000514097.1	chr4	71067974:71068046:71068472:71068634:71068872:71068931,	71068473	71068634	71068636	71068636	Splice_Site	T	C	p.K270_splice
HNSC	TCGA-CR-7399-01	F3	ENST00000334047.7	chr1	94994865:94996152:94997876:94998036:94998645:94998824,	94997877	94998036	94997876	94997876	Splice_Site	C	T	p.E251_splice
HNSC	TCGA-CR-7402-01	GLUL	ENST00000311223.5,ENST00000339526.4,ENST00000461447.1,ENST00000463851.2,ENST00000417584.2,ENST00000331872.6	chr1	182353549:182353858:182354491:182354691:182354894:182354977,	182354492	182354691	182354693	182354693	Splice_Site	T	C	p.W202_splice
HNSC	TCGA-CR-7402-01	PLCB3	ENST00000279230.6,ENST00000325234.5,ENST00000540288.1	chr11	64022423:64022510:64022705:64022785:64022867:64022921,	64022706	64022785	64022704	64022704	Splice_Site	A	T	p.V130_splice
HNSC	TCGA-CR-7402-01	PACS1	ENST00000529757.1,ENST00000320580.4	chr11	66002771:66002874:66003368:66003411:66006274:66006317,	66003369	66003411	66003368	66003368	Splice_Site	G	A	p.F736_splice
HNSC	TCGA-CR-7402-01	PKD1	ENST00000423118.1,ENST00000262304.4	chr16	2166592:2166645:2166833:2167054:2167489:2167673,	2166834	2167054	2167056	2167056	Splice_Site	T	C	p.R462_splice
HNSC	TCGA-CR-7402-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8206600:8206726:8206823:8207021:8209760:8209856,	8206824	8207021	8206823	8206824	Splice_Site	CC	AA	p.D247_splice
HNSC	TCGA-CR-7402-01	EEFSEC	ENST00000254730.6	chr3	127983459:127983624:128060075:128060732:128077059:128077216,	128060076	128060732	128060074	128060074	Splice_Site	A	T	p.V263_splice
HNSC	TCGA-CR-7402-01	SERAC1	ENST00000607742.1,ENST00000607000.1,ENST00000367104.3,ENST00000607071.1,ENST00000367101.1,ENST00000367102.2,ENST00000606965.1	chr6	158567813:158567945:158569896:158569986:158571484:158571621,	158569897	158569986	158569896	158569896	Splice_Site	C	G	p.D119_splice
HNSC	TCGA-CV-5430-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666929	157666929	Splice_Site	C	G	p.R282_splice
HNSC	TCGA-CV-5430-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666929	157666929	Splice_Site	C	G	p.R282_splice
HNSC	TCGA-CV-5430-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666929	157666929	Splice_Site	C	G	p.R282_splice
HNSC	TCGA-CV-5430-01	GALNT11	ENST00000423337.1	chr7	151791404:151791607:151797909:151798006:151800196:151800241,	151797910	151798006	151798008	151798008	Splice_Site	T	C	p.A140_splice
HNSC	TCGA-CV-5430-01	GALNT11	ENST00000434507.1,ENST00000447796.1,ENST00000430044.2,ENST00000419245.1,ENST00000415421.1,ENST00000320311.2	chr7	151791404:151791607:151797882:151798006:151800196:151800241,	151797883	151798006	151798008	151798008	Splice_Site	T	C	p.A140_splice
HNSC	TCGA-CV-5431-01	TMEM39B	ENST00000476968.1,ENST00000472503.1,ENST00000427288.1,ENST00000336294.5,ENST00000498613.1,ENST00000468135.1,ENST00000487305.1,ENST00000466321.1	chr1	32541267:32541423:32542764:32542919:32557275:32557345,32542363:32542447:32542764:32542919:32557275:32557345,	32542765	32542919	32542920	32542920	Splice_Site	G	A	p.P197_splice
HNSC	TCGA-CV-5432-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577018	7577018	Splice_Site	C	A	p.A307_splice
HNSC	TCGA-CV-5432-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225362469:225362566:225365079:225365204:225367681:225367789,	225365080	225365204	225365205	225365205	Splice_Site	C	A	p.V496_splice
HNSC	TCGA-CV-5434-01	PWP2	ENST00000486126.1,ENST00000291576.7,ENST00000456705.1	chr21	45534505:45534649:45535144:45535280:45535571:45535625,	45535145	45535280	45535281	45535281	Splice_Site	G	A	p.D202_splice
HNSC	TCGA-CV-5439-01	ARHGAP21	ENST00000446003.1,ENST00000376410.2,ENST00000476499.1,ENST00000396432.2,ENST00000416305.1	chr10	24923939:24924032:24955913:24955938:24959146:24959326,	24955914	24955938	24955940	24955940	Splice_Site	T	A	p.D82_splice
HNSC	TCGA-CV-5439-01	TERF1	ENST00000276603.5	chr8	73939174:73939287:73942570:73942630:73944276:73944368,	73942571	73942630	73942569	73942569	Splice_Site	A	G	p.S296_splice
HNSC	TCGA-CV-5441-01	TDRD10	ENST00000368480.3,ENST00000462871.1,ENST00000479937.1,ENST00000368482.4	chr1	154516438:154516586:154516847:154516993:154517270:154517309,	154516848	154516993	154516995	154516995	Splice_Site	T	A	p.R266_splice
HNSC	TCGA-CV-5441-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000396104.2	chr16	20486683:20486763:20486971:20487095:20488690:20488771,	20486972	20487095	20487096	20487096	Splice_Site	G	T	p.T366_splice
HNSC	TCGA-CV-5441-01	CDS2	ENST00000535100.1	chr20	5165503:5165591:5166403:5166472:5167332:5167420,5165503:5165591:5166403:5166472:5169712:5169832,	5166404	5166472	5166473	5166473	Splice_Site	G	A	p.L276_splice
HNSC	TCGA-CV-5441-01	CACNA2D1	ENST00000423588.1,ENST00000461275.1,ENST00000356253.5,ENST00000356860.3	chr7	81689743:81689843:81693619:81693670:81695770:81695840,	81693620	81693670	81693671	81693671	Splice_Site	C	G	p.W243_splice
HNSC	TCGA-CV-5441-01	SLC13A1	ENST00000427975.1,ENST00000194130.2	chr7	122774463:122774583:122787212:122787364:122808427:122808476,	122787213	122787364	122787212	122787213	Splice_Site	CG	TA	p.T271_splice
HNSC	TCGA-CV-5442-01	OGDHL	ENST00000419399.1	chr10	50960683:50960786:50966434:50966639:50970284:50970369,	50966435	50966639	50966434	50966434	Splice_Site	C	A	p.K68_splice
HNSC	TCGA-CV-5442-01	PKHD1L1	ENST00000378402.5	chr8	110400725:110400779:110401307:110401381:110402680:110402723,	110401308	110401381	110401306	110401306	Splice_Site	A	T	p.L208_splice
HNSC	TCGA-CV-5444-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970900	21970901	Splice_Site	CC	TT	p.D153_splice
HNSC	TCGA-CV-5979-01	MRPL27	ENST00000503633.1,ENST00000225969.4,ENST00000442592.3	chr17	48447392:48447460:48447815:48447947:48450491:48450536,	48447816	48447947	48447949	48447949	Splice_Site	T	A	p.V14_splice
HNSC	TCGA-CV-6441-01	ST13	ENST00000455824.1	chr22	41236629:41236696:41240842:41240913:41252434:41252620,	41240843	41240913	41240914	41240914	Splice_Site	C	T	p.E82_splice
HNSC	TCGA-CV-6933-01	PAPPA	ENST00000328252.3	chr9	118989709:118989831:118997417:118997916:119028135:119028264,	118997418	118997916	118997917	118997917	Splice_Site	G	T	p.M911_splice
HNSC	TCGA-CV-6935-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938390	44938390	Splice_Site	G	C	p.D980_splice
HNSC	TCGA-CV-6936-01	ASMTL	ENST00000381317.3,ENST00000534940.1	chrX	1553914:1553976:1554586:1554651:1557989:1558037,	1554587	1554651	1554652	1554652	Splice_Site	C	T	p.T92_splice
HNSC	TCGA-CV-6938-01	IRF6	ENST00000542854.1	chr1	209968634:209968763:209969692:209969897:209974584:209974761,209968634:209968763:209969692:209969897:209979291:209979389,	209969693	209969897	209969692	209969692	Splice_Site	C	G	p.G127_splice
HNSC	TCGA-CV-6942-01	BMP7	ENST00000395864.3	chr20	55748275:55748366:55749986:55750063:55758777:55758975,55748275:55748366:55749986:55750063:55777530:55777679,	55749987	55750063	55750064	55750064	Splice_Site	C	G	p.E320_splice
HNSC	TCGA-CV-6943-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29912175	29912175	Splice_Site	G	T	p.E299_splice
HNSC	TCGA-CV-6948-01	LRP1	ENST00000243077.3	chr12	57594481:57594598:57594816:57594936:57595279:57595402,	57594817	57594936	57594938	57594938	Splice_Site	T	C	p.P3449_splice
HNSC	TCGA-CV-6948-01	RAB26	ENST00000565592.1,ENST00000541451.1,ENST00000561600.1,ENST00000567145.2,ENST00000210187.6,ENST00000562735.1,ENST00000564426.1	chr16	2201576:2201611:2201695:2201762:2201856:2201909,	2201696	2201762	2201695	2201695	Splice_Site	G	T	p.M117_splice
HNSC	TCGA-CV-6948-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576928	7576928	Splice_Site	T	C	p.A307_splice
HNSC	TCGA-CV-6961-01	LAT	ENST00000564277.1,ENST00000454369.2,ENST00000566177.1	chr16	28997174:28997209:28997455:28997537:28997702:28997719,28997174:28997209:28997455:28997537:28997705:28997767,	28997456	28997537	28997455	28997455	Splice_Site	G	C	p.H55_splice
HNSC	TCGA-CV-6961-01	SSBP4	ENST00000348495.6,ENST00000600244.1,ENST00000601444.2,ENST00000593641.3,ENST00000270061.7	chr19	18543368:18543414:18543509:18543545:18543638:18543654,	18543510	18543545	18543509	18543509	Splice_Site	G	C	p.I251_splice
HNSC	TCGA-CV-6961-01	LTBP4	ENST00000597816.1,ENST00000599724.1,ENST00000318809.7	chr19	41120220:41120352:41125251:41125398:41128305:41128310,41120220:41120352:41125251:41125398:41129508:41129538,	41125252	41125398	41125251	41125251	Splice_Site	G	A	p.D1091_splice
HNSC	TCGA-CV-6961-01	SNAP91	ENST00000439399.2,ENST00000518312.1,ENST00000369694.2,ENST00000521616.1,ENST00000428679.2,ENST00000521485.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1	chr6	84304092:84304200:84310989:84311157:84311303:84311318,	84310990	84311157	84311158	84311158	Splice_Site	C	G	p.D386_splice
HNSC	TCGA-CV-6962-01	DCAF4	ENST00000505361.1,ENST00000514191.1,ENST00000555042.1,ENST00000509153.1,ENST00000353777.3,ENST00000509320.1	chr14	73393185:73393251:73404678:73404778:73406509:73406610,	73404679	73404778	73404779	73404779	Splice_Site	G	A	p.R31_splice
HNSC	TCGA-CV-6962-01	VWA3A	ENST00000299840.6,ENST00000566668.1,ENST00000389397.4,ENST00000389398.5	chr16	22134405:22134486:22134933:22135028:22137498:22137618,	22134934	22135028	22134933	22134933	Splice_Site	G	T	p.Q480_splice
HNSC	TCGA-CV-7089-01	PROM2	ENST00000487138.1,ENST00000317620.9,ENST00000317668.4,ENST00000542147.1	chr2	95940248:95940577:95941208:95941258:95941677:95941840,	95941209	95941258	95941259	95941259	Splice_Site	G	T	p.E98_splice
HNSC	TCGA-CV-7090-01	ABCC3	ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48744914:48745118:48745223:48745370:48745790:48745878,	48745224	48745370	48745371	48745371	Splice_Site	G	A	p.Q594_splice
HNSC	TCGA-CV-7091-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000470570.1,ENST00000366576.3	chr1	237058657:237058850:237060305:237060418:237060857:237061434,	237060306	237060418	237060420	237060420	Splice_Site	T	C	p.Q1237_splice
HNSC	TCGA-CV-7095-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35384242:35384311:35385720:35385810:35386161:35386290,	35385721	35385810	35385812	35385812	Splice_Site	T	C	p.K906_splice
HNSC	TCGA-CV-7101-01	EEF2K	ENST00000563555.1,ENST00000263026.5	chr16	22269814:22270016:22271782:22271850:22274430:22274508,	22271783	22271850	22271782	22271782	Splice_Site	G	C	p.H411_splice
HNSC	TCGA-CV-7101-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000545076.1,ENST00000427684.2,ENST00000542652.2	chr18	5393178:5393477:5394675:5394792:5395065:5395146,	5394676	5394792	5394794	5394794	Splice_Site	T	A	p.A1052_splice
HNSC	TCGA-CV-7177-01	ANGPTL4	ENST00000301455.2,ENST00000595079.1,ENST00000593998.1,ENST00000541807.1,ENST00000393962.2	chr19	8435939:8436035:8436124:8436406:8438588:8438839,	8436125	8436406	8436124	8436124	Splice_Site	G	A	p.G253_splice
HNSC	TCGA-CV-7177-01	FAM184A	ENST00000368475.4,ENST00000521531.1,ENST00000352896.5,ENST00000522284.1,ENST00000338891.7	chr6	119337911:119338109:119341142:119341324:119344109:119344245,	119341143	119341324	119341142	119341142	Splice_Site	C	T	p.K444_splice
HNSC	TCGA-CV-7235-01	FLOT1	ENST00000456573.2,ENST00000487376.1,ENST00000376389.3	chr6	30697813:30697963:30698204:30698342:30698458:30698504,	30698205	30698342	30698343	30698343	Splice_Site	C	G	p.M318_splice
HNSC	TCGA-CV-7242-01	DNASE2	ENST00000222219.3	chr19	12989483:12989648:12991615:12991694:12991785:12991966,	12991616	12991694	12991695	12991695	Splice_Site	C	G	p.L90_splice
HNSC	TCGA-CV-7242-01	UPK3A	ENST00000216211.4	chr22	45684941:45685024:45689061:45689194:45691440:45691703,	45689062	45689194	45689060	45689060	Splice_Site	A	T	p.L191_splice
HNSC	TCGA-CV-7245-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19485486:19485598:19488761:19488840:19490752:19490850,	19488762	19488840	19488760	19488760	Splice_Site	A	T	p.R697_splice
HNSC	TCGA-CV-7245-01	IL12RB1	ENST00000593993.2,ENST00000600835.2	chr19	18177351:18177507:18179198:18179336:18180355:18180523,	18179199	18179336	18179338	18179338	Splice_Site	T	A	p.A397_splice
HNSC	TCGA-CV-7245-01	VWC2L	ENST00000312504.5	chr2	215278837:215279307:215301352:215301482:215440395:215443683,	215301353	215301482	215301351	215301351	Splice_Site	A	T	p.P131_splice
HNSC	TCGA-CV-7245-01	VEGFC	ENST00000507638.1,ENST00000280193.2	chr4	177632652:177632804:177648931:177649122:177650686:177650746,	177648932	177649122	177649124	177649124	Splice_Site	T	A	p.S121_splice
HNSC	TCGA-CV-7245-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4	chr8	121282273:121282413:121290349:121290473:121290673:121290817,	121290350	121290473	121290348	121290348	Splice_Site	A	T	p.V1072_splice
HNSC	TCGA-CV-7248-01	SRPK3	ENST00000370104.1,ENST00000393786.3,ENST00000370100.1,ENST00000370101.3,ENST00000489426.1,ENST00000370108.3	chrX	153049575:153049668:153049748:153049849:153050204:153050312,	153049749	153049849	153049747	153049747	Splice_Site	A	T	p.T383_splice
HNSC	TCGA-CV-7253-01	CDC16	ENST00000356221.3,ENST00000494766.1,ENST00000375312.3	chr13	115000555:115000607:115002119:115002174:115002276:115002371,115000555:115000607:115002119:115002174:115002273:115002371,	115002120	115002174	115002175	115002175	Splice_Site	G	T	p.E35_splice
HNSC	TCGA-CV-7253-01	CDH11	ENST00000567934.1,ENST00000268603.4,ENST00000394156.3	chr16	65032464:65032759:65038544:65038944:65087706:65087831,	65038545	65038944	65038544	65038544	Splice_Site	C	A	p.R76_splice
HNSC	TCGA-CV-7254-01	STK36	ENST00000392105.3,ENST00000295709.3,ENST00000440309.1,ENST00000392106.2,ENST00000424080.1	chr2	219540751:219541001:219543890:219543984:219544282:219544340,	219543891	219543984	219543985	219543985	Splice_Site	G	T	p.I260_splice
HNSC	TCGA-CV-7255-01	EBNA1BP2	ENST00000236051.2,ENST00000431635.2	chr1	43634609:43634699:43636426:43636550:43637149:43637322,	43636427	43636550	43636551	43636551	Splice_Site	C	T	p.F108_splice
HNSC	TCGA-CV-7263-01	PTPRC	ENST00000352140.3,ENST00000367376.2,ENST00000529828.1,ENST00000442510.2,ENST00000418674.1	chr1	198661475:198661502:198665840:198666038:198668692:198668749,	198665841	198666038	198665840	198665840	Splice_Site	G	A	p.G32_splice
HNSC	TCGA-CV-7263-01	IFT172	ENST00000507184.1,ENST00000260570.3	chr2	27688277:27688385:27688612:27688749:27693794:27693962,	27688613	27688749	27688750	27688750	Splice_Site	C	A	p.G565_splice
HNSC	TCGA-CV-7406-01	TRIM55	ENST00000315962.4	chr8	67064614:67064862:67066281:67066569:67086705:67086827,	67066282	67066569	67066571	67066571	Splice_Site	T	G	p.Q508_splice
HNSC	TCGA-CV-7407-01	PFKL	ENST00000466134.1,ENST00000397961.2,ENST00000349048.4,ENST00000403390.1,ENST00000491298.1,ENST00000496824.1	chr21	45726563:45726637:45730888:45730966:45731987:45732120,	45730889	45730966	45730967	45730967	Splice_Site	G	T	p.L79_splice
HNSC	TCGA-CV-7410-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2,ENST00000415489.1	chr2	55894125:55894228:55894996:55895093:55898453:55898503,	55894997	55895093	55894995	55894995	Splice_Site	A	G	p.R358_splice
HNSC	TCGA-CV-7414-01	CCDC90B	ENST00000528149.1,ENST00000525916.1,ENST00000455220.2,ENST00000525503.1,ENST00000529689.1,ENST00000529611.1,ENST00000527025.1,ENST00000529745.1,ENST00000527495.1,ENST00000529856.1,ENST00000534753.1,ENST00000529312.1	chr11	82984835:82984907:82984993:82985035:82985681:82985783,	82984994	82985035	82985036	82985036	Splice_Site	C	G	p.K143_splice
HNSC	TCGA-CV-7414-01	CCDC90B	ENST00000260054.4	chr11	82984719:82984743:82984835:82985035:82985681:82985783,	82984836	82985035	82985036	82985036	Splice_Site	C	G	p.K143_splice
HNSC	TCGA-CV-7414-01	COG3	ENST00000349995.5	chr13	46090281:46090398:46092896:46092985:46093094:46093229,	46092897	46092985	46092895	46092895	Splice_Site	A	G	p.D644_splice
HNSC	TCGA-CV-7414-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16022736:16022799:16024365:16024583:16029395:16029520,	16024366	16024583	16024584	16024584	Splice_Site	C	T	p.K545_splice
HNSC	TCGA-CV-7414-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000506705.1,ENST00000505590.1	chr4	100047744:100047883:100048359:100048495:100052654:100052915,	100048360	100048495	100048496	100048496	Splice_Site	C	G	p.K282_splice
HNSC	TCGA-CV-7418-01	TNNI2	ENST00000381906.1,ENST00000381905.3,ENST00000252898.7,ENST00000381911.1	chr11	1861757:1861886:1862048:1862138:1862260:1862437,	1862049	1862138	1862048	1862048	Splice_Site	G	A	p.E63_splice
HNSC	TCGA-CV-7418-01	KIAA0556	ENST00000261588.4	chr16	27763039:27763245:27765493:27765572:27772733:27772911,	27765494	27765572	27765493	27765493	Splice_Site	G	A	p.I1185_splice
HNSC	TCGA-CV-7423-01	TPCN2	ENST00000294309.3,ENST00000542467.1	chr11	68821500:68821565:68822188:68822265:68822642:68822820,	68822189	68822265	68822187	68822187	Splice_Site	A	G	p.Y59_splice
HNSC	TCGA-CV-7424-01	DNAH5	ENST00000265104.4	chr5	13735926:13736041:13737360:13737604:13751186:13751369,	13737361	13737604	13737360	13737360	Splice_Site	C	A	p.V3819_splice
HNSC	TCGA-CV-7427-01	STK16	ENST00000486813.1	chr2	220111463:220111598:220111834:220111968:220112136:220112256,220110617:220110807:220111834:220111968:220112136:220112256,	220111835	220111968	220111834	220111834	Splice_Site	G	C	p.R103_splice
HNSC	TCGA-CV-7429-01	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000465705.1,ENST00000392129.6,ENST00000580248.1,ENST00000481278.1	chr1	165712415:165712548:165721338:165721406:165723464:165723511,	165721339	165721406	165721337	165721337	Splice_Site	A	G	p.I108_splice
HNSC	TCGA-CV-7434-01	ZNF333	ENST00000596285.1,ENST00000601629.1,ENST00000598161.1,ENST00000597301.1,ENST00000292530.6,ENST00000597007.1,ENST00000540689.2,ENST00000392987.3,ENST00000536363.1	chr19	14804262:14804306:14805821:14805945:14806377:14806473,	14805822	14805945	14805946	14805946	Splice_Site	G	A	p.G43_splice
HNSC	TCGA-CV-7440-01	RIMS3	ENST00000372684.3,ENST00000372683.1	chr1	41098740:41098853:41101587:41101729:41107380:41107628,	41101588	41101729	41101587	41101587	Splice_Site	C	A	p.T120_splice
HNSC	TCGA-CV-7440-01	WDR90	ENST00000549091.1,ENST00000420061.2,ENST00000293879.4	chr16	701643:701747:701826:702039:702466:702535,	701827	702039	701826	701826	Splice_Site	G	T	p.S281_splice
HNSC	TCGA-CX-7085-01	NUP93	ENST00000564887.1,ENST00000569863.1,ENST00000567641.1,ENST00000568656.1,ENST00000542526.1,ENST00000308159.5,ENST00000569842.1	chr16	56832387:56832450:56839415:56839544:56852575:56852621,	56839416	56839544	56839414	56839414	Splice_Site	A	T	p.T121_splice
HNSC	TCGA-CX-7086-01	REN	ENST00000367195.2,ENST00000272190.8	chr1	204123946:204124305:204124947:204125046:204125305:204125367,	204124948	204125046	204124947	204124947	Splice_Site	C	A	p.Q353_splice
HNSC	TCGA-D6-6516-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878062	104878062	Splice_Site	C	T	p.K61_splice
HNSC	TCGA-D6-6516-01	FAM124A	ENST00000322475.8	chr13	51805483:51805515:51825603:51826337:51854585:51855616,	51825604	51826337	51826338	51826338	Splice_Site	G	A	p.Q278_splice
HNSC	TCGA-D6-6516-01	CNTROB	ENST00000576723.1,ENST00000565740.1,ENST00000563694.1,ENST00000576922.1,ENST00000380262.3	chr17	7847793:7847956:7849045:7849304:7850888:7851003,	7849046	7849304	7849045	7849046	Splice_Site	GG	AA	p.A579_splice
HNSC	TCGA-D6-6516-01	PAX5	ENST00000523241.1,ENST00000414447.1,ENST00000377853.2,ENST00000358127.4,ENST00000523493.1,ENST00000377852.2,ENST00000520281.1,ENST00000520154.1,ENST00000377840.2,ENST00000377847.2	chr9	37006469:37006534:37014993:37015191:37020632:37020798,	37014994	37015191	37014993	37014993	Splice_Site	C	T	p.R137_splice
HNSC	TCGA-D6-6823-01	KRT4	ENST00000458244.2,ENST00000548097.1,ENST00000293774.4,ENST00000551956.1	chr12	53201142:53201177:53201427:53201648:53202077:53202194,	53201428	53201648	53201426	53201426	Splice_Site	A	G	p.R523_splice
HNSC	TCGA-D6-6826-01	MAGEA11	ENST00000355220.5	chrX	148793737:148793822:148794802:148794915:148796140:148796236,	148794803	148794915	148794917	148794917	Splice_Site	T	A	p.Q32_splice
HNSC	TCGA-DQ-5624-01	NOX1	ENST00000372960.4,ENST00000372966.3,ENST00000217885.5	chrX	100117159:100117292:100117380:100117562:100117657:100117809,	100117381	100117562	100117563	100117563	Splice_Site	C	T	p.T164_splice
HNSC	TCGA-DQ-5629-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970900	21970900	Splice_Site	C	A	p.D153_splice
HNSC	TCGA-DQ-5630-01	KIRREL2	ENST00000360202.5,ENST00000262625.7,ENST00000347900.6	chr19	36352706:36352926:36353394:36353499:36353828:36353938,	36353395	36353499	36353394	36353394	Splice_Site	G	T	p.D504_splice
HNSC	TCGA-DQ-5631-01	FBXW10	ENST00000301938.4,ENST00000574478.1,ENST00000395667.1,ENST00000308799.4,ENST00000395665.4	chr17	18654243:18654366:18659357:18659467:18661617:18661818,	18659358	18659467	18659468	18659468	Splice_Site	G	A	p.T411_splice
HNSC	TCGA-DQ-5631-01	NANS	ENST00000461452.1,ENST00000210444.5	chr9	100840602:100840629:100843097:100843364:100845127:100845357,	100843098	100843364	100843365	100843365	Splice_Site	G	T	p.K290_splice
HNSC	TCGA-DQ-7588-01	SMARCA2	ENST00000349721.2,ENST00000382203.1,ENST00000357248.2,ENST00000382194.1	chr9	2097384:2097471:2101569:2101616:2104002:2104169,	2101570	2101616	2101568	2101568	Splice_Site	A	G	p.E1027_splice
HNSC	TCGA-F7-7848-01	PLA2R1	ENST00000283243.7,ENST00000392771.1	chr2	160832578:160832736:160833195:160833231:160833794:160833908,	160833196	160833231	160833232	160833232	Splice_Site	C	T	p.D801_splice
HNSC	TCGA-F7-7848-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2	chr3	46477691:46477720:46479430:46479620:46480786:46480971,	46479431	46479620	46479621	46479621	Splice_Site	C	A	p.A637_splice
HNSC	TCGA-F7-7848-01	TPMT	ENST00000309983.4	chr6	18143826:18143959:18148053:18148146:18149218:18149402,	18148054	18148146	18148147	18148147	Splice_Site	C	G	p.Q47_splice
HNSC	TCGA-F7-7848-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51751930:51752043:51768394:51768525:51768783:51768840,	51768395	51768525	51768526	51768526	Splice_Site	C	T	p.D2289_splice
HNSC	TCGA-BA-5152-01	SFTPC	ENST00000521315.1,ENST00000523296.1	chr8	22020592:22020715:22020948:22021059:22021395:22021425,22020592:22020715:22020948:22021059:22021413:22021425,	22020949	22021059	22021060	22021061	Splice_Site	GT	-	p.Q145_splice
HNSC	TCGA-BA-6871-01	CWF19L2	ENST00000532251.1,ENST00000282251.5	chr11	107205606:107205687:107207283:107207439:107219662:107219779,	107207284	107207439	107207441	107207442	Splice_Site	-	A	p.M735_splice
HNSC	TCGA-BA-6872-01	SRRD	ENST00000477945.1,ENST00000215917.7	chr22	26884355:26884454:26886009:26886164:26886990:26887036,	26886010	26886164	26886165	26886168	Splice_Site	GTAA	-	p.R255_splice
HNSC	TCGA-CN-5369-01	TRPC6	ENST00000360497.4	chr11	101353679:101353896:101362286:101362469:101374754:101374821,	101362287	101362469	101362286	101362287	Splice_Site	-	T	p.K376_splice
HNSC	TCGA-CN-6988-01	HORMAD1	ENST00000442853.1	chr1	150684020:150684047:150686560:150686597:150689613:150689758,	150686561	150686597	150686599	150686600	Splice_Site	-	A	p.W81_splice
HNSC	TCGA-CQ-5326-01	BTNL8	ENST00000231229.4,ENST00000503543.1	chr5	180374511:180374625:180375354:180375375:180375919:180375946,180374511:180374755:180375354:180375375:180375919:180375946,	180375355	180375375	180375376	180375379	Splice_Site	GTAA	-	p.D270_splice
HNSC	TCGA-CQ-6218-01	IL1R2	ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102636121:102636274:102638648:102638711:102640994:102641130,	102638649	102638711	102638648	102638649	Splice_Site	-	A	p.K230_splice
HNSC	TCGA-CR-5247-01	SPOCD1	ENST00000528579.1,ENST00000532604.1,ENST00000473361.1	chr1	32259827:32259836:32263807:32263924:32264042:32264202,	32263808	32263924	32263807	32263824	Splice_Site	CCCTTTTCTCCTCCTGGT	-	p.R715_splice
HNSC	TCGA-CR-7368-01	DNM2	ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000585892.1,ENST00000359692.6,ENST00000591701.1	chr19	10887844:10887892:10893635:10893796:10897239:10897382,	10893636	10893796	10893634	10893635	Splice_Site	-	GGCTACATT	p.G230_splice
HNSC	TCGA-CR-7376-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579698	7579699	Splice_Site	-	CC	p.L32_splice
HNSC	TCGA-CR-7388-01	SLC35D1	ENST00000235345.5,ENST00000506472.2	chr1	67487217:67487285:67507918:67508011:67512947:67513050,	67507919	67508011	67507918	67507918	Splice_Site	C	-	p.K243_splice
HNSC	TCGA-CV-6959-01	UXS1	ENST00000283148.7,ENST00000409501.3,ENST00000540130.1,ENST00000457835.1	chr2	106761645:106761826:106774513:106774574:106780122:106780166,	106774514	106774574	106774513	106774513	Splice_Site	C	-	p.L92_splice
HNSC	TCGA-CV-7097-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576840	7576851	Splice_Site	CAAGACTTAGTA	-	p.Q331_splice
HNSC	TCGA-CV-7253-01	PEX16	ENST00000378750.5,ENST00000525229.1,ENST00000525192.1,ENST00000241041.3,ENST00000532681.1	chr11	45937253:45937387:45937777:45937854:45939008:45939044,	45937778	45937854	45937775	45937776	Splice_Site	-	A	p.V75_splice
KICH	TCGA-KL-8331-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596668	136596668	Splice_Site	A	C	.
KICH	TCGA-KL-8331-01	ZNF185	ENST00000370270.2,ENST00000535861.1,ENST00000449285.2,ENST00000370268.4	chrX	152090716:152090800:152091263:152091353:152100215:152100320,152090716:152090800:152091263:152091353:152097118:152097205,	152091264	152091353	152091354	152091354	Splice_Site	G	T	.
KICH	TCGA-KN-8428-01	PPOX	ENST00000495483.1,ENST00000537829.1,ENST00000352210.5,ENST00000367999.4	chr1	161139474:161139510:161139695:161139814:161140198:161140251,	161139696	161139814	161139815	161139815	Splice_Site	G	T	.
KICH	TCGA-KN-8428-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236761177:236761279:236762782:236762924:236766459:236766676,	236762783	236762924	236762781	236762781	Splice_Site	A	G	.
KICH	TCGA-KN-8428-01	FXN	ENST00000396366.2,ENST00000396364.3,ENST00000377270.3,ENST00000498653.1	chr9	71661322:71661398:71668055:71668176:71679853:71679951,	71668056	71668176	71668178	71668178	Splice_Site	T	C	.
KICH	TCGA-KN-8428-01	TTC8	ENST00000345383.5,ENST00000380656.2,ENST00000556077.1,ENST00000338104.6,ENST00000556133.1	chr14	89307380:89307540:89307768:89307858:89319314:89319341,89307380:89307540:89307768:89307858:89310149:89310194,	89307769	89307858	89307767	89307767	Splice_Site	A	G	.
KICH	TCGA-KN-8428-01	KIRREL2	ENST00000360202.5,ENST00000262625.7,ENST00000347900.6,ENST00000586102.3,ENST00000592409.1	chr19	36349309:36349459:36349605:36349766:36350382:36350433,	36349606	36349766	36349605	36349605	Splice_Site	G	A	.
KICH	TCGA-KN-8428-01	MACROD2	ENST00000217246.4	chr20	15967710:15967803:16021845:16021923:16030474:16030521,	16021846	16021923	16021924	16021924	Splice_Site	G	A	.
KICH	TCGA-KL-8338-01	NDUFB5	ENST00000259037.3,ENST00000493866.1,ENST00000473500.1,ENST00000482604.1,ENST00000359944.6,ENST00000472629.1,ENST00000476587.1,ENST00000468210.1	chr3	179333794:179333837:179336202:179336309:179341707:179341879,179334770:179334832:179336202:179336309:179341707:179341879,	179336203	179336309	179336311	179336311	Splice_Site	T	C	.
KICH	TCGA-KN-8430-01	SKA3	ENST00000314759.5,ENST00000465471.1,ENST00000298260.4,ENST00000400018.3	chr13	21735928:21736014:21742126:21742538:21746477:21746643,	21742127	21742538	21742126	21742126	Splice_Site	C	A	.
KICH	TCGA-KL-8335-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577018	7577018	Splice_Site	C	T	.
KICH	TCGA-KL-8335-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143095693	143095693	Splice_Site	C	-	.
KICH	TCGA-KN-8421-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467628:136467801:136473119:136473264:136479493:136479576,	136473120	136473264	136473266	136473266	Splice_Site	T	A	.
KICH	TCGA-KL-8345-01	MTCH2	ENST00000530428.1,ENST00000302503.3	chr11	47652587:47652639:47653205:47653263:47656223:47656283,	47653206	47653263	47653265	47653265	Splice_Site	T	C	.
KICH	TCGA-KL-8345-01	SKA3	ENST00000314759.5,ENST00000465471.1,ENST00000298260.4,ENST00000400018.3	chr13	21735928:21736014:21742126:21742538:21746477:21746643,	21742127	21742538	21742126	21742126	Splice_Site	C	A	.
KICH	TCGA-KN-8433-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579699	7579699	Splice_Site	C	A	.
KICH	TCGA-KN-8433-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000601749.1,ENST00000595618.1	chr19	17291735:17291849:17294637:17294677:17295673:17295707,	17294638	17294677	17294679	17294680	Splice_Site	-	A	.
KICH	TCGA-KL-8331-01	ZNF185	ENST00000370270.2,ENST00000535861.1,ENST00000449285.2,ENST00000370268.4	chrX	152090716:152090800:152091263:152091353:152100215:152100320,152090716:152090800:152091263:152091353:152097118:152097205,	152091264	152091353	152091354	152091354	Splice_Site	G	T	p.S276_splice
KICH	TCGA-KL-8335-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577018	7577018	Splice_Site	C	T	p.A307_splice
KICH	TCGA-KL-8338-01	NDUFB5	ENST00000259037.3,ENST00000493866.1,ENST00000473500.1,ENST00000482604.1,ENST00000359944.6,ENST00000472629.1,ENST00000476587.1,ENST00000468210.1	chr3	179333794:179333837:179336202:179336309:179341707:179341879,179334770:179334832:179336202:179336309:179341707:179341879,	179336203	179336309	179336311	179336311	Splice_Site	T	C	p.R150_splice
KICH	TCGA-KL-8345-01	MTCH2	ENST00000530428.1,ENST00000302503.3	chr11	47652587:47652639:47653205:47653263:47656223:47656283,	47653206	47653263	47653265	47653265	Splice_Site	T	C	p.T124_splice
KICH	TCGA-KM-8438-01	RALGAPB	ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3,ENST00000537204.1	chr20	37121572:37121775:37125995:37126159:37128089:37128276,	37125996	37126159	37126161	37126161	Splice_Site	T	C	p.G185_splice
KICH	TCGA-KN-8418-01	PRKAA1	ENST00000296800.4,ENST00000397128.2,ENST00000506652.1,ENST00000509874.1	chr5	40771820:40771965:40775511:40775605:40777546:40777688,	40775512	40775605	40775606	40775606	Splice_Site	C	T	p.L90_splice
KICH	TCGA-KN-8421-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467628:136467801:136473119:136473264:136479493:136479576,	136473120	136473264	136473266	136473266	Splice_Site	T	A	p.G926_splice
KICH	TCGA-KN-8423-01	RC3H2	ENST00000423239.2,ENST00000357244.2,ENST00000373670.1,ENST00000498479.1	chr9	125618010:125618157:125620201:125620372:125620947:125621196,	125620202	125620372	125620200	125620200	Splice_Site	A	G	p.D818_splice
KICH	TCGA-KN-8428-01	MACROD2	ENST00000217246.4	chr20	15967710:15967803:16021845:16021923:16030474:16030521,	16021846	16021923	16021924	16021924	Splice_Site	G	A	p.V411_splice
KICH	TCGA-KN-8428-01	FOXN3	ENST00000555353.1,ENST00000345097.4,ENST00000553840.1,ENST00000557258.1,ENST00000261302.5,ENST00000556916.1	chr14	89747293:89747358:89817015:89817152:89878277:89878361,	89817016	89817152	89817014	89817014	Splice_Site	A	G	p.S227_splice
KICH	TCGA-KN-8428-01	KIRREL2	ENST00000360202.5,ENST00000262625.7,ENST00000347900.6,ENST00000586102.3,ENST00000592409.1	chr19	36349309:36349459:36349605:36349766:36350382:36350433,	36349606	36349766	36349605	36349605	Splice_Site	G	A	p.V121_splice
KICH	TCGA-KN-8428-01	TTC8	ENST00000345383.5,ENST00000380656.2,ENST00000556077.1,ENST00000338104.6,ENST00000556133.1	chr14	89307380:89307540:89307768:89307858:89319314:89319341,89307380:89307540:89307768:89307858:89310149:89310194,	89307769	89307858	89307767	89307767	Splice_Site	A	G	p.A154_splice
KICH	TCGA-KN-8433-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579699	7579699	Splice_Site	C	A	p.L32_splice
KICH	TCGA-KO-8405-01	SARDH	ENST00000422262.2,ENST00000371872.4,ENST00000371868.1,ENST00000439388.1	chr9	136536656:136536819:136550314:136550408:136555501:136555649,	136550315	136550408	136550314	136550314	Splice_Site	C	A	p.L721_splice
KICH	TCGA-KO-8408-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	A	p.E224_splice
KICH	TCGA-KL-8327-01	GNPNAT1	ENST00000557604.1,ENST00000554230.1,ENST00000216410.3	chr14	53245092:53245176:53247396:53247458:53248501:53248629,	53247397	53247458	53247394	53247395	Splice_Site	-	A	p.L136_splice
KICH	TCGA-KL-8335-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143095693	143095693	Splice_Site	C	-	p.E446_splice
KICH	TCGA-KO-8409-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3677232:3677535:3677731:3677989:3678444:3678780,	3677732	3677989	3677991	3677992	Splice_Site	-	G	p.A708_splice
KIRC	TCGA-AK-3429-01	ANGPT1	ENST00000520052.1,ENST00000297450.3	chr8	108315467:108315595:108334126:108334356:108348377:108348499,	108334127	108334356	108334357	108334357	Splice_Site	C	G	.
KIRC	TCGA-AK-3429-01	ANGPT1	ENST00000517746.1,ENST00000520734.1	chr8	108315467:108315595:108334123:108334356:108348377:108348499,	108334124	108334356	108334357	108334357	Splice_Site	C	G	.
KIRC	TCGA-B0-5107-01	PBRM1	ENST00000356770.4	chr3	52668617:52668831:52675969:52676061:52677263:52677359,52668617:52668831:52675969:52676061:52678719:52678805,	52675970	52676061	52676063	52676063	Splice_Site	T	A	.
KIRC	TCGA-B0-5107-01	SMARCA2	ENST00000349721.2,ENST00000382203.1,ENST00000357248.2,ENST00000382194.1	chr9	2110253:2110417:2115821:2116049:2119457:2119535,	2115822	2116049	2116050	2116050	Splice_Site	G	A	.
KIRC	TCGA-B0-5705-01	STAC2	ENST00000584501.1,ENST00000333461.5	chr17	37371203:37371276:37371370:37371483:37373062:37373153,	37371371	37371483	37371369	37371369	Splice_Site	A	G	.
KIRC	TCGA-CJ-4634-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
KIRC	TCGA-BP-4985-01	IDO1	ENST00000519154.1,ENST00000522495.1,ENST00000518237.1,ENST00000521636.1,ENST00000253513.7	chr8	39775403:39775489:39775606:39775726:39776333:39776452,	39775607	39775726	39775606	39775606	Splice_Site	G	A	.
KIRC	TCGA-CJ-5681-01	NPRL2	ENST00000232501.3,ENST00000476064.1,ENST00000433999.1,ENST00000448302.1	chr3	50386304:50386441:50386816:50386925:50387095:50387259,	50386817	50386925	50386816	50386816	Splice_Site	C	G	.
KIRC	TCGA-CJ-5681-01	NPRL2	ENST00000487632.1,ENST00000479512.1,ENST00000433381.1,ENST00000418825.1	chr3	50386304:50386441:50386816:50386921:50387095:50387259,	50386817	50386921	50386816	50386816	Splice_Site	C	G	.
KIRC	TCGA-BP-4998-01	LRP11	ENST00000546019.1	chr6	150164118:150164260:150174138:150174296:150184543:150185162,150164118:150164260:150174138:150174296:150186020:150186199,	150174139	150174296	150174138	150174138	Splice_Site	C	A	.
KIRC	TCGA-B0-4823-01	THRA	ENST00000394121.4,ENST00000546243.1,ENST00000264637.4,ENST00000584985.1,ENST00000450525.2	chr17	38240862:38241068:38242959:38243106:38244494:38244753,	38242960	38243106	38243108	38243108	Splice_Site	T	A	.
KIRC	TCGA-CJ-5677-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
KIRC	TCGA-A3-3346-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000437809.1,ENST00000482386.1,ENST00000361040.5,ENST00000271883.5	chr1	155747412:155747611:155753776:155753880:155755124:155755165,	155753777	155753880	155753882	155753882	Splice_Site	T	G	.
KIRC	TCGA-B2-4099-01	RUFY3	ENST00000417478.2,ENST00000536664.1,ENST00000381006.3,ENST00000502653.1,ENST00000226328.4	chr4	71644085:71644155:71648807:71648900:71650512:71650596,	71648808	71648900	71648807	71648807	Splice_Site	G	T	.
KIRC	TCGA-A3-3372-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90949253:90949303:90955480:90955594:90958367:90958523,	90955481	90955594	90955480	90955481	Splice_Site	CC	-	.
KIRC	TCGA-A3-3372-01	TTC37	ENST00000514952.1,ENST00000358746.2	chr5	94861290:94861377:94863716:94863856:94864704:94864806,	94863717	94863856	94863716	94863716	Splice_Site	C	-	.
KIRC	TCGA-B8-A54H-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000548130.1,ENST00000267064.4,ENST00000550164.1,ENST00000552566.1,ENST00000552674.1	chr12	56568434:56568548:56571805:56571877:56572187:56572318,	56571806	56571877	56571878	56571878	Splice_Site	C	G	.
KIRC	TCGA-B8-4621-01	LRRC36	ENST00000290940.7,ENST00000567723.1	chr16	67399206:67399258:67400919:67401360:67404846:67405145,67397492:67397617:67400919:67401360:67404846:67405145,	67400920	67401360	67401361	67401361	Splice_Site	G	T	.
KIRC	TCGA-BP-5001-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000521398.1,ENST00000522006.1	chr6	112510332:112510407:112512837:112513052:112522808:112522889,	112512838	112513052	112513053	112513053	Splice_Site	C	G	.
KIRC	TCGA-G6-A5PC-01	CRHR1	ENST00000339069.5,ENST00000580876.1	chr17	43911079:43911215:43911372:43911414:43911989:43912011,43910817:43910903:43911372:43911414:43911989:43912207,	43911373	43911414	43911415	43911415	Splice_Site	G	T	.
KIRC	TCGA-BP-4977-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367641	66367641	Splice_Site	C	A	.
KIRC	TCGA-B0-5110-01	ANAPC5	ENST00000441917.2,ENST00000535482.1,ENST00000545218.1,ENST00000534976.1,ENST00000344395.4,ENST00000541887.1,ENST00000544314.1,ENST00000261819.3,ENST00000539079.1,ENST00000535641.1	chr12	121757499:121757621:121758187:121758262:121764898:121765034,	121758188	121758262	121758187	121758187	Splice_Site	C	A	.
KIRC	TCGA-CZ-5453-01	POT1	ENST00000608057.1,ENST00000357628.3,ENST00000609106.1,ENST00000607932.1	chr7	124499031:124499166:124503403:124503694:124532319:124532434,124499031:124499166:124503403:124503694:124510964:124511095,	124503404	124503694	124503402	124503402	Splice_Site	A	T	.
KIRC	TCGA-CZ-5453-01	PSTPIP2	ENST00000409746.5,ENST00000593086.1	chr18	43571901:43571949:43572071:43572168:43573570:43573669,	43572072	43572168	43572169	43572169	Splice_Site	C	A	.
KIRC	TCGA-CJ-6033-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610715	52610715	Splice_Site	C	G	.
KIRC	TCGA-BP-4163-01	POLN	ENST00000511885.2,ENST00000382865.1,ENST00000515357.1	chr4	2159584:2159638:2160881:2160938:2172405:2172501,	2160882	2160938	2160880	2160880	Splice_Site	A	C	.
KIRC	TCGA-DV-5566-01	PLG	ENST00000308192.9	chr6	161137676:161137795:161139325:161139488:161139724:161139870,	161139326	161139488	161139489	161139489	Splice_Site	G	T	.
KIRC	TCGA-B0-4821-01	SETD2	ENST00000409792.3,ENST00000330022.7	chr3	47103652:47103836:47108559:47108608:47125209:47125436,	47108560	47108608	47108558	47108559	Splice_Site	-	CT	.
KIRC	TCGA-B0-5706-01	HAUS1	ENST00000588704.1,ENST00000282058.6,ENST00000593165.1,ENST00000591715.1,ENST00000592206.1	chr18	43698207:43698282:43699891:43700026:43702432:43702556,	43699892	43700026	43700027	43700027	Splice_Site	G	A	.
KIRC	TCGA-DV-5573-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16025966:16026379:16032695:16032809:16035394:16035497,	16032696	16032809	16032694	16032695	Splice_Site	-	C	.
KIRC	TCGA-BP-4782-01	TRAPPC9	ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	141301091:141301177:141310567:141310713:141321346:141321473,	141310568	141310713	141310714	141310714	Splice_Site	C	T	.
KIRC	TCGA-CZ-5467-01	ZNF280D	ENST00000267807.7,ENST00000559237.1	chr15	56946395:56946432:56946582:56946701:56950621:56950684,	56946583	56946701	56946702	56946702	Splice_Site	C	A	.
KIRC	TCGA-AK-3451-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000424120.1,ENST00000389652.5,ENST00000512702.1,ENST00000513811.1	chr4	15511761:15511863:15512869:15513046:15516329:15516492,	15512870	15513046	15513048	15513048	Splice_Site	T	G	.
KIRC	TCGA-CJ-6031-01	NSD1	ENST00000347982.4,ENST00000508896.1,ENST00000439151.2,ENST00000354179.4	chr5	176618884:176619020:176631120:176631293:176636636:176636673,	176631121	176631293	176631295	176631295	Splice_Site	T	C	.
KIRC	TCGA-B0-5077-01	GHITM	ENST00000372134.3	chr10	85908485:85908594:85909810:85909999:85910464:85910636,	85909811	85909999	85910001	85910008	Splice_Site	TAAGCTGC	-	.
KIRC	TCGA-B0-5097-01	CLOCK	ENST00000309964.4,ENST00000511124.1,ENST00000381322.1,ENST00000513440.1	chr4	56310799:56310952:56314945:56315035:56315562:56315593,	56314946	56315035	56314944	56314944	Splice_Site	A	G	.
KIRC	TCGA-B0-5097-01	CLOCK	ENST00000309964.4,ENST00000511124.1,ENST00000381322.1,ENST00000513440.1	chr4	56310799:56310952:56314945:56315035:56315562:56315593,	56314946	56315035	56314945	56314945	Splice_Site	C	A	.
KIRC	TCGA-A3-3308-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712017	89712017	Splice_Site	G	A	.
KIRC	TCGA-CZ-5463-01	ZMYND15	ENST00000574829.1	chr17	4646597:4646750:4647061:4647402:4647484:4647573,	4647062	4647402	4647403	4647403	Splice_Site	G	T	.
KIRC	TCGA-CZ-5463-01	ZMYND15	ENST00000573751.2,ENST00000571782.1,ENST00000433935.1	chr17	4647061:4647142:4647285:4647402:4647484:4647573,	4647286	4647402	4647403	4647403	Splice_Site	G	T	.
KIRC	TCGA-B8-5550-01	NOTCH2	ENST00000256646.2	chr1	120491036:120491189:120491629:120491749:120493346:120493460,	120491630	120491749	120491750	120491750	Splice_Site	C	A	.
KIRC	TCGA-B8-5550-01	CASK	ENST00000378166.4,ENST00000378154.1,ENST00000378163.1,ENST00000378158.1,ENST00000361962.4,ENST00000472704.1,ENST00000421587.2,ENST00000318588.9,ENST00000442742.2,ENST00000378179.3	chrX	41420811:41420897:41428920:41428999:41437592:41437706,	41428921	41428999	41428920	41428920	Splice_Site	C	T	.
KIRC	TCGA-B8-5550-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	75022205:75022396:75052556:75052821:75070337:75070408,	75052557	75052821	75052556	75052556	Splice_Site	C	-	.
KIRC	TCGA-B0-4811-01	PKN3	ENST00000485301.1,ENST00000291906.4	chr9	131480603:131480666:131480827:131480904:131481964:131482107,	131480828	131480904	131480826	131480826	Splice_Site	A	C	.
KIRC	TCGA-A3-3326-01	FCRL2	ENST00000368178.3,ENST00000361516.3	chr1	157716660:157716689:157718342:157718408:157718664:157718750,	157718343	157718408	157718409	157718409	Splice_Site	C	A	.
KIRC	TCGA-A3-3326-01	PBRM1	ENST00000394830.3	chr3	52595782:52595984:52597379:52597509:52598065:52598249,	52597380	52597509	52597379	52597379	Splice_Site	C	-	.
KIRC	TCGA-CZ-5454-01	PAPOLA	ENST00000556787.1,ENST00000392990.2,ENST00000555626.1,ENST00000554666.1,ENST00000216277.8,ENST00000553689.1	chr14	97008579:97008633:97009110:97009230:97010485:97010595,	97009111	97009230	97009231	97009231	Splice_Site	G	A	.
KIRC	TCGA-3Z-A93Z-01	PIK3CD	ENST00000536656.1,ENST00000377346.4,ENST00000361110.2	chr1	9783182:9783350:9784026:9784150:9784333:9784463,	9784027	9784150	9784151	9784151	Splice_Site	G	C	.
KIRC	TCGA-3Z-A93Z-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77474490:77475528:77477534:77477676:77477809:77478016,	77477535	77477676	77477534	77477534	Splice_Site	G	T	.
KIRC	TCGA-CJ-5689-01	LAPTM4B	ENST00000521545.2	chr8	98788076:98788336:98817580:98817692:98827555:98827629,	98817581	98817692	98817579	98817579	Splice_Site	A	T	.
KIRC	TCGA-B0-5108-01	CD44	ENST00000434472.2,ENST00000527889.1,ENST00000525211.1,ENST00000531873.1,ENST00000360158.4,ENST00000433354.2,ENST00000525209.1,ENST00000526000.1,ENST00000442151.2,ENST00000415148.2,ENST00000428726.2,ENST00000449691.2,ENST00000437706.2,ENST00000263398.6,ENST00000433892.2,ENST00000279452.6,ENST00000528455.1,ENST00000352818.4,ENST00000531118.1	chr11	35201904:35201954:35208378:35208447:35211381:35211519,	35208379	35208447	35208449	35208449	Splice_Site	T	A	.
KIRC	TCGA-B0-5696-01	SHISA4	ENST00000464117.1,ENST00000362011.6	chr1	201859581:201859715:201860528:201860696:201860927:201861265,	201860529	201860696	201860697	201860697	Splice_Site	G	T	.
KIRC	TCGA-B0-5696-01	CACNA1G	ENST00000354983.4,ENST00000511768.1,ENST00000429973.2,ENST00000512389.1,ENST00000505165.1,ENST00000502264.1,ENST00000510115.1,ENST00000503485.1,ENST00000570567.1,ENST00000503436.1,ENST00000503607.1,ENST00000507336.1,ENST00000515411.1,ENST00000513964.1,ENST00000511765.1,ENST00000358244.5,ENST00000515165.1,ENST00000504076.1,ENST00000352832.5,ENST00000506406.1,ENST00000507609.1,ENST00000514079.1,ENST00000507896.1,ENST00000416767.4,ENST00000359106.5,ENST00000515765.1,ENST00000360761.4,ENST00000513689.2,ENST00000442258.2,ENST00000514181.1,ENST00000507510.2,ENST00000514717.1,ENST00000510366.1	chr17	48646525:48646659:48647066:48647164:48649238:48649398,	48647067	48647164	48647166	48647166	Splice_Site	T	A	.
KIRC	TCGA-B4-5377-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52685779:52685826:52692214:52692331:52696148:52696292,	52692215	52692331	52692333	52692333	Splice_Site	T	A	.
KIRC	TCGA-B4-5377-01	WDR74	ENST00000529106.1,ENST00000525239.1,ENST00000525752.1,ENST00000544831.1,ENST00000278856.4	chr11	62600429:62600603:62601089:62601146:62601263:62601409,	62601090	62601146	62601147	62601147	Splice_Site	C	A	.
KIRC	TCGA-CJ-4918-01	CDK5RAP2	ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123220727:123220900:123222849:123222945:123230137:123230275,	123222850	123222945	123222946	123222946	Splice_Site	C	T	.
KIRC	TCGA-CJ-4918-01	HIF1A	ENST00000323441.6	chr14	62207472:62207906:62211422:62211531:62212408:62212535,62207472:62207906:62211422:62211531:62213651:62214190,	62211423	62211531	62211422	62211422	Splice_Site	G	C	.
KIRC	TCGA-CJ-4918-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41348497:41348608:41348958:41349123:41352183:41352324,	41348959	41349123	41349125	41349125	Splice_Site	T	C	.
KIRC	TCGA-MM-A564-01	NPAS2	ENST00000486017.1,ENST00000427413.1,ENST00000448812.1,ENST00000542504.1,ENST00000335681.5	chr2	101541607:101541756:101549371:101549463:101554214:101554304,	101549372	101549463	101549464	101549464	Splice_Site	G	T	.
KIRC	TCGA-MM-A564-01	TEN1	ENST00000416485.1,ENST00000397640.1	chr17	73982267:73982365:73987546:73987704:73996221:73996602,	73987547	73987704	73987705	73987705	Splice_Site	G	C	.
KIRC	TCGA-B2-3924-01	MYO1B	ENST00000339514.4,ENST00000304164.4,ENST00000494129.1,ENST00000392318.3,ENST00000392316.1	chr2	192248005:192248068:192250609:192250810:192251949:192252176,	192250610	192250810	192250811	192250811	Splice_Site	G	T	.
KIRC	TCGA-A3-3373-01	EIF5A	ENST00000336458.8,ENST00000336452.7,ENST00000416016.2,ENST00000571955.1,ENST00000573542.1,ENST00000576930.1,ENST00000419711.2,ENST00000573714.1	chr17	7214336:7214441:7214668:7214800:7214896:7214934,	7214669	7214800	7214802	7214802	Splice_Site	T	C	.
KIRC	TCGA-A3-3383-01	NCAPH2	ENST00000395701.3,ENST00000395698.3,ENST00000299821.11	chr22	50946688:50946874:50954875:50954977:50955855:50955911,	50954876	50954977	50954874	50954874	Splice_Site	A	C	.
KIRC	TCGA-B0-4816-01	WDR78	ENST00000431318.1,ENST00000371022.3,ENST00000371023.3,ENST00000371026.3	chr1	67337052:67337192:67340463:67340620:67356836:67356949,	67340464	67340620	67340463	67340463	Splice_Site	C	T	.
KIRC	TCGA-B8-A54E-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000338252.3,ENST00000325674.7,ENST00000508608.1,ENST00000510156.1,ENST00000348386.3,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000508579.1,ENST00000395813.1,ENST00000437034.2,ENST00000510500.1,ENST00000395812.2,ENST00000484552.1,ENST00000511049.1,ENST00000515663.1,ENST00000510756.1,ENST00000509903.1	chr5	96090364:96090445:96093147:96093198:96093286:96093358,	96093148	96093198	96093147	96093147	Splice_Site	G	T	.
KIRC	TCGA-B8-5551-01	CCDC138	ENST00000470608.1	chr2	109403243:109403371:109404487:109404545:109405307:109405422,109403228:109403260:109404487:109404545:109405307:109405422,	109404488	109404545	109404486	109404486	Splice_Site	A	T	.
KIRC	TCGA-CZ-5465-01	BBS9	ENST00000354265.4,ENST00000242067.6,ENST00000465037.1,ENST00000350941.3,ENST00000433714.1,ENST00000425508.2,ENST00000396127.2,ENST00000355070.2	chr7	33192312:33192463:33195249:33195314:33217089:33217187,	33195250	33195314	33195316	33195316	Splice_Site	T	C	.
KIRC	TCGA-CZ-5465-01	C5	ENST00000223642.1	chr9	123716007:123716146:123719562:123719646:123722525:123722615,	123719563	123719646	123719562	123719562	Splice_Site	C	T	.
KIRC	TCGA-CZ-5465-01	RHOJ	ENST00000555125.1,ENST00000316754.3	chr14	63671576:63671765:63735827:63735886:63747688:63747754,	63735828	63735886	63735887	63735887	Splice_Site	G	C	.
KIRC	TCGA-B0-4698-01	PICALM	ENST00000532317.1,ENST00000356360.5,ENST00000534412.1,ENST00000526033.1,ENST00000528398.1,ENST00000393346.3	chr11	85714408:85714494:85718584:85718626:85722072:85722178,	85718585	85718626	85718627	85718627	Splice_Site	C	A	.
KIRC	TCGA-B0-4698-01	LRFN5	ENST00000554171.1	chr14	42355808:42357213:42368119:42368163:42373360:42373752,	42368120	42368163	42368164	42368164	Splice_Site	G	T	.
KIRC	TCGA-B0-4698-01	NF2	ENST00000361676.4	chr22	30032739:30032865:30035078:30035201:30038190:30038274,29999987:30000101:30035078:30035201:30038190:30038274,	30035079	30035201	30035077	30035077	Splice_Site	A	G	.
KIRC	TCGA-BP-4973-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168096787:168096996:168098202:168098488:168100181:168100336,	168098203	168098488	168098202	168098202	Splice_Site	C	G	.
KIRC	TCGA-BP-5187-01	SIL1	ENST00000508639.1,ENST00000503732.1,ENST00000509534.1,ENST00000394817.2,ENST00000265195.5	chr5	138362645:138362681:138378308:138378408:138386626:138386735,	138378309	138378408	138378410	138378410	Splice_Site	T	A	.
KIRC	TCGA-CJ-6030-01	ADAMTS13	ENST00000371929.3,ENST00000485925.1,ENST00000371916.1,ENST00000474918.1,ENST00000495234.1,ENST00000355699.2,ENST00000356589.2,ENST00000371911.3	chr9	136289440:136289598:136290648:136290732:136291057:136291182,	136290649	136290732	136290647	136290647	Splice_Site	A	G	.
KIRC	TCGA-CJ-5680-01	MTFR1L	ENST00000531361.1	chr1	26150134:26150239:26152792:26152902:26155999:26156321,	26152793	26152902	26152903	26152903	Splice_Site	G	T	.
KIRC	TCGA-CJ-6027-01	KHK	ENST00000260598.5	chr2	27317344:27317479:27317667:27317802:27319596:27319669,27315199:27315316:27317667:27317802:27319596:27319669,	27317668	27317802	27317803	27317803	Splice_Site	G	A	.
KIRC	TCGA-B0-5080-01	MECOM	ENST00000487503.1	chr3	168861485:168861620:168862784:168862846:168863105:168864076,	168862785	168862846	168862848	168862848	Splice_Site	T	C	.
KIRC	TCGA-BP-5004-01	NUMB	ENST00000555238.1,ENST00000554315.1,ENST00000555307.1,ENST00000557597.1,ENST00000554521.2,ENST00000356296.4,ENST00000559312.1,ENST00000454166.4,ENST00000544991.3,ENST00000556989.1,ENST00000359560.3,ENST00000555859.1,ENST00000555738.2,ENST00000555394.1,ENST00000554394.1,ENST00000355058.3,ENST00000535282.1,ENST00000554546.1,ENST00000560335.1,ENST00000556772.1	chr14	73753817:73754022:73759441:73759582:73763918:73763993,	73759442	73759582	73759584	73759584	Splice_Site	T	C	.
KIRC	TCGA-B0-5106-01	MRPL18	ENST00000367034.4,ENST00000476826.1,ENST00000480842.1	chr6	160211978:160212158:160218318:160218550:160219083:160219345,	160218319	160218550	160218317	160218317	Splice_Site	A	C	.
KIRC	TCGA-B0-4700-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188197	10188197	Splice_Site	G	T	.
KIRC	TCGA-CW-5583-01	TYRO3	ENST00000560162.1,ENST00000263798.3,ENST00000559851.1,ENST00000559066.1	chr15	41864640:41864762:41865199:41865309:41865505:41865575,	41865200	41865309	41865198	41865198	Splice_Site	A	T	.
KIRC	TCGA-BP-4995-01	DUSP26	ENST00000256261.4,ENST00000523956.1	chr8	33449365:33449730:33451050:33451265:33454812:33455106,	33451051	33451265	33451267	33451267	Splice_Site	T	A	.
KIRC	TCGA-B0-5115-01	COL27A1	ENST00000356083.3,ENST00000494090.2	chr9	116967381:116967426:116968038:116968092:116968531:116968576,	116968039	116968092	116968037	116968037	Splice_Site	A	G	.
KIRC	TCGA-B0-5115-01	ERLIN1	ENST00000407654.3,ENST00000421367.2,ENST00000370408.2	chr10	101915901:101915991:101923760:101923852:101927104:101927163,	101923761	101923852	101923759	101923759	Splice_Site	A	G	.
KIRC	TCGA-CJ-5686-01	ATG7	ENST00000354449.3,ENST00000488924.1,ENST00000418682.1,ENST00000354956.5	chr3	11350482:11350535:11354777:11354894:11356817:11356862,	11354778	11354894	11354777	11354777	Splice_Site	G	T	.
KIRC	TCGA-CZ-5462-01	CPXM2	ENST00000241305.3	chr10	125521387:125521685:125526488:125526668:125528041:125528238,	125526489	125526668	125526488	125526488	Splice_Site	C	T	.
KIRC	TCGA-BP-5180-01	SKA3	ENST00000298260.4	chr13	21742360:21742538:21746477:21746643:21746758:21746820,21742360:21742538:21746477:21746643:21750513:21750612,	21746478	21746643	21746645	21746645	Splice_Site	T	G	.
KIRC	TCGA-B8-4143-01	RAB3GAP2	ENST00000491305.1,ENST00000491005.1,ENST00000358951.2	chr1	220324947:220325106:220326526:220326748:220327309:220327399,	220326527	220326748	220326526	220326526	Splice_Site	C	T	.
KIRC	TCGA-B8-4143-01	ESPL1	ENST00000549154.1,ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53685767:53685872:53686061:53686177:53686357:53686441,	53686062	53686177	53686061	53686061	Splice_Site	G	T	.
KIRC	TCGA-B2-4101-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188196	10188196	Splice_Site	A	T	.
KIRC	TCGA-B2-4101-01	ETV4	ENST00000545089.1	chr17	41607489:41607549:41610041:41610307:41610554:41610627,41607539:41607549:41610041:41610307:41611226:41611350,	41610042	41610307	41610308	41610308	Splice_Site	C	T	.
KIRC	TCGA-CZ-4859-01	CLK2	ENST00000355560.4,ENST00000361168.5	chr1	155238083:155238150:155238498:155238583:155239278:155239504,	155238499	155238583	155238498	155238498	Splice_Site	C	-	.
KIRC	TCGA-CZ-4859-01	CLK2	ENST00000368361.4,ENST00000471047.1,ENST00000536801.1	chr1	155238083:155238150:155238498:155238586:155239278:155239504,	155238499	155238586	155238498	155238498	Splice_Site	C	-	.
KIRC	TCGA-CZ-4859-01	HLA-DPA1	ENST00000453337.1	chr6	33037540:33037663:33041247:33041549:33048456:33048532,	33041248	33041549	33041247	33041247	Splice_Site	C	-	.
KIRC	TCGA-BP-4161-01	PRSS3	ENST00000379405.3	chr9	33795567:33795611:33796640:33796800:33797826:33797975,	33796641	33796800	33796801	33796801	Splice_Site	G	A	.
KIRC	TCGA-BP-4161-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1,ENST00000604560.1	chr12	51689579:51689662:51690872:51690948:51692986:51693072,	51690873	51690948	51690950	51690950	Splice_Site	T	A	.
KIRC	TCGA-BP-5168-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157959622:157959983:157985018:157985187:157997862:157997965,	157985019	157985187	157985188	157985188	Splice_Site	C	T	.
KIRC	TCGA-6D-AA2E-01	SARS2	ENST00000594171.1,ENST00000600042.1,ENST00000600448.1,ENST00000448145.2,ENST00000221431.6,ENST00000430193.3	chr19	39410401:39410507:39410725:39410789:39412031:39412086,	39410726	39410789	39410790	39410791	Splice_Site	-	TGGA	.
KIRC	TCGA-B8-A54D-01	VEGFC	ENST00000280193.2	chr4	177608974:177609081:177632652:177632804:177648931:177649001,	177632653	177632804	177632651	177632651	Splice_Site	A	C	.
KIRC	TCGA-B0-4852-01	ADAMTS20	ENST00000389420.3	chr12	43769181:43769315:43769859:43769951:43770038:43770133,	43769860	43769951	43769952	43769952	Splice_Site	C	T	.
KIRC	TCGA-B0-4852-01	ZBTB46	ENST00000245663.4,ENST00000395104.1,ENST00000302995.2	chr20	62384038:62384214:62407030:62407315:62421173:62421212,	62407031	62407315	62407316	62407316	Splice_Site	C	T	.
KIRC	TCGA-BP-4960-01	PRKRA	ENST00000325748.4,ENST00000487082.1,ENST00000432031.2	chr2	179308069:179308111:179309148:179309227:179312231:179312313,	179309149	179309227	179309147	179309147	Splice_Site	A	T	.
KIRC	TCGA-BP-4960-01	OXCT1	ENST00000509987.1,ENST00000196371.5	chr5	41794104:41794180:41794778:41794851:41801123:41801172,	41794779	41794851	41794778	41794778	Splice_Site	C	G	.
KIRC	TCGA-BP-5010-01	RUVBL2	ENST00000413176.2,ENST00000595090.1,ENST00000596247.1,ENST00000594338.1,ENST00000221413.6	chr19	49514448:49514567:49517740:49517860:49518277:49518407,	49517741	49517860	49517740	49517740	Splice_Site	G	A	.
KIRC	TCGA-BP-4987-01	PI4KA	ENST00000572273.1,ENST00000475414.1,ENST00000255882.6	chr22	21101870:21101990:21104192:21104282:21105580:21105664,	21104193	21104282	21104191	21104191	Splice_Site	A	G	.
KIRC	TCGA-CJ-4904-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43615949:43616167:43619133:43619221:43624133:43624222,	43619134	43619221	43619222	43619222	Splice_Site	G	A	.
KIRC	TCGA-AK-3444-01	PTPN22	ENST00000538253.1,ENST00000532224.1,ENST00000420377.2,ENST00000359785.5,ENST00000484147.1	chr1	114391161:114391248:114394648:114394726:114397092:114397159,	114394649	114394726	114394727	114394727	Splice_Site	C	A	.
KIRC	TCGA-B0-5120-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229601166:229601266:229602380:229602503:229606326:229606551,	229602381	229602503	229602504	229602504	Splice_Site	C	A	.
KIRC	TCGA-B0-5120-01	SNRPD2	ENST00000585392.1	chr19	46190720:46190985:46191644:46191724:46195144:46195146,	46191645	46191724	46191644	46191644	Splice_Site	C	-	.
KIRC	TCGA-B0-5120-01	SNRPD2	ENST00000588301.1	chr19	46190720:46190985:46191644:46191824:46195144:46195146,	46191645	46191824	46191644	46191644	Splice_Site	C	-	.
KIRC	TCGA-CZ-5989-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46250972:46251074:46252654:46252827:46254124:46254225,	46252655	46252827	46252829	46252829	Splice_Site	T	C	.
KIRC	TCGA-DV-5576-01	MFF	ENST00000476924.1,ENST00000470090.1,ENST00000530359.1,ENST00000531278.1,ENST00000534203.1,ENST00000524634.1	chr2	228190080:228190143:228197134:228197304:228205007:228205070,	228197135	228197304	228197305	228197305	Splice_Site	G	A	.
KIRC	TCGA-MM-A563-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000478274.2,ENST00000407246.2,ENST00000430330.2,ENST00000435345.2	chr1	53480645:53480715:53504588:53504718:53513529:53513609,53493649:53493743:53504588:53504718:53513529:53513609,	53504589	53504718	53504719	53504719	Splice_Site	G	A	.
KIRC	TCGA-CZ-5987-01	PDCD6IP	ENST00000435909.1	chr3	33840121:33840429:33855050:33855120:33863446:33863491,	33855051	33855120	33855050	33855050	Splice_Site	G	A	.
KIRC	TCGA-DV-A4VX-01	CLDN19	ENST00000372539.3,ENST00000296387.1	chr1	43201548:43201701:43203899:43203984:43204091:43204256,	43203900	43203984	43203898	43203898	Splice_Site	A	G	.
KIRC	TCGA-BP-4988-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108139136:108139336:108141790:108141873:108141977:108142079,	108141791	108141873	108141874	108141874	Splice_Site	G	A	.
KIRC	TCGA-A3-3367-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47059127:47059229:47061249:47061330:47079155:47079267,	47061250	47061330	47061248	47061258	Splice_Site	CCAAACCTTAC	-	.
KIRC	TCGA-CJ-4639-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87656746:87656899:87662786:87662969:87666118:87666281,	87662787	87662969	87662970	87662970	Splice_Site	G	T	.
KIRC	TCGA-CZ-4856-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188322	10188322	Splice_Site	T	C	.
KIRC	TCGA-BP-5196-01	CLK1	ENST00000409403.2	chr2	201719338:201719418:201721404:201721534:201721613:201721708,	201721405	201721534	201721535	201721535	Splice_Site	C	A	.
KIRC	TCGA-A3-A6NI-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188196	10188196	Splice_Site	A	C	.
KIRC	TCGA-A3-A6NI-01	PRDM15	ENST00000447207.2,ENST00000269844.3,ENST00000449395.1,ENST00000441787.1,ENST00000398548.1,ENST00000538201.1,ENST00000433067.1,ENST00000447016.2,ENST00000422911.1	chr21	43240450:43240530:43241422:43241586:43242258:43242393,	43241423	43241586	43241422	43241422	Splice_Site	C	A	.
KIRC	TCGA-MM-A84U-01	SPG21	ENST00000560564.1	chr15	65268812:65268893:65273201:65273363:65275844:65275931,65268812:65268893:65273201:65273363:65282002:65282045,	65273202	65273363	65273364	65273364	Splice_Site	C	G	.
KIRC	TCGA-B8-4154-01	PSMC5	ENST00000375812.4,ENST00000310144.6,ENST00000578570.1,ENST00000579147.1,ENST00000580864.1,ENST00000585123.1,ENST00000581882.1,ENST00000585242.1,ENST00000581842.1,ENST00000584320.1	chr17	61907211:61907309:61907492:61907549:61907630:61907699,	61907493	61907549	61907491	61907491	Splice_Site	A	G	.
KIRC	TCGA-CW-6093-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52678719:52678805:52682359:52682458:52685757:52685826,	52682360	52682458	52682459	52682459	Splice_Site	C	T	.
KIRC	TCGA-B0-5690-01	SRFBP1	ENST00000339397.4	chr5	121356224:121356497:121358064:121358102:121362636:121364314,	121358065	121358102	121358103	121358103	Splice_Site	G	A	.
KIRC	TCGA-B0-5690-01	PRSS3	ENST00000379405.3	chr9	33795567:33795611:33796640:33796800:33797826:33797975,	33796641	33796800	33796801	33796801	Splice_Site	G	A	.
KIRC	TCGA-GK-A6C7-01	INPP4A	ENST00000409851.3,ENST00000545415.1,ENST00000523221.1,ENST00000409016.4,ENST00000409540.3,ENST00000074304.5	chr2	99160339:99160470:99162431:99162536:99163048:99163157,	99162432	99162536	99162538	99162538	Splice_Site	T	A	.
KIRC	TCGA-G6-A8L6-01	RASA3	ENST00000542651.1	chr13	114817526:114817630:114839194:114839312:114897909:114898027,	114839195	114839312	114839194	114839194	Splice_Site	C	T	.
KIRC	TCGA-G6-A8L6-01	CPEB3	ENST00000412050.4	chr10	93904701:93904869:93940719:93940776:93952302:93952393,	93940720	93940776	93940719	93940720	Splice_Site	-	T	.
KIRC	TCGA-B0-5713-01	CUTC	ENST00000370476.5,ENST00000370472.4	chr10	101507043:101507147:101510125:101510153:101514285:101514307,	101510126	101510153	101510155	101510158	Splice_Site	TATT	-	.
KIRC	TCGA-CJ-5679-01	DHX37	ENST00000544745.1,ENST00000308736.2,ENST00000539298.1	chr12	125434958:125435096:125435235:125435350:125436943:125437116,	125435236	125435350	125435351	125435351	Splice_Site	C	T	.
KIRC	TCGA-CJ-5679-01	MYO16	ENST00000457511.2,ENST00000357550.2,ENST00000356711.2	chr13	109707393:109707474:109707737:109707943:109753132:109753235,	109707738	109707943	109707736	109707736	Splice_Site	A	G	.
KIRC	TCGA-BP-4972-01	HPGD	ENST00000504433.1,ENST00000296521.7,ENST00000542498.1,ENST00000512410.1	chr4	175439121:175439228:175443094:175443218:175443509:175443626,	175443095	175443218	175443219	175443219	Splice_Site	C	A	.
KIRC	TCGA-BP-4972-01	PABPC1	ENST00000518716.1,ENST00000318607.5,ENST00000519004.1,ENST00000522387.1,ENST00000517403.1	chr8	101719016:101719033:101719114:101719225:101721360:101721451,	101719115	101719225	101719226	101719226	Splice_Site	C	G	.
KIRC	TCGA-AK-3430-01	WDR77	ENST00000449340.1,ENST00000459665.1,ENST00000235090.5	chr1	111989716:111989766:111990056:111990198:111991240:111991351,	111990057	111990198	111990200	111990200	Splice_Site	T	A	.
KIRC	TCGA-CJ-4897-01	COPS7A	ENST00000534947.1,ENST00000544725.1,ENST00000538410.1,ENST00000229251.3,ENST00000541866.1,ENST00000543155.1,ENST00000534877.1,ENST00000539735.1,ENST00000538753.1	chr12	6833779:6833984:6837091:6837167:6837388:6837477,	6837092	6837167	6837091	6837091	Splice_Site	G	C	.
KIRC	TCGA-CW-6090-01	GCSH	ENST00000315467.3	chr16	81116427:81116568:81118067:81118199:81124205:81124285,81116427:81116568:81118067:81118199:81129735:81129845,81116427:81116568:81118067:81118199:81121205:81121269,	81118068	81118199	81118200	81118200	Splice_Site	C	A	.
KIRC	TCGA-BP-4981-01	VMP1	ENST00000588617.1	chr17	57915215:57915573:57915672:57915758:57917128:57917364,	57915673	57915758	57915760	57915760	Splice_Site	T	C	.
KIRC	TCGA-BP-4981-01	VMP1	ENST00000539763.1,ENST00000262291.4,ENST00000592619.1,ENST00000537567.1,ENST00000536180.1,ENST00000545362.1	chr17	57895072:57895134:57915655:57915758:57917128:57917364,	57915656	57915758	57915760	57915760	Splice_Site	T	C	.
KIRC	TCGA-A3-3317-01	SELENBP1	ENST00000447402.3,ENST00000493560.1,ENST00000470345.1,ENST00000423070.1,ENST00000368868.5,ENST00000426705.2,ENST00000455397.1,ENST00000443708.1,ENST00000463664.1,ENST00000435071.1	chr1	151337401:151337520:151337664:151337757:151338038:151338160,	151337665	151337757	151337664	151337664	Splice_Site	C	G	.
KIRC	TCGA-B0-5711-01	ACTN4	ENST00000390009.3,ENST00000424234.2,ENST00000440400.1,ENST00000252699.2	chr19	39215076:39215205:39216363:39216543:39217596:39217743,	39216364	39216543	39216363	39216363	Splice_Site	G	A	.
KIRC	TCGA-B2-5635-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120830753:120830796:120831675:120831754:120833051:120833096,	120831676	120831754	120831675	120831675	Splice_Site	G	-	.
KIRC	TCGA-AS-3778-01	SLC7A10	ENST00000590036.1	chr19	33701707:33701804:33702130:33702234:33702319:33702443,33701372:33701522:33702130:33702234:33702319:33702443,	33702131	33702234	33702235	33702235	Splice_Site	C	G	.
KIRC	TCGA-CZ-5459-01	PDE5A	ENST00000394439.1,ENST00000513594.1,ENST00000512739.1,ENST00000264805.5,ENST00000354960.3	chr4	120442154:120442215:120446703:120446850:120460114:120460174,	120446704	120446850	120446851	120446851	Splice_Site	C	A	.
KIRC	TCGA-CW-5587-01	CENPE	ENST00000265148.3,ENST00000380026.3,ENST00000503705.1	chr4	104102493:104102613:104103918:104104048:104104357:104104445,	104103919	104104048	104104049	104104050	Splice_Site	-	TTT	.
KIRC	TCGA-B8-4151-01	PLEKHG3	ENST00000490180.2	chr14	65199520:65199619:65203570:65204093:65205459:65205573,	65203571	65204093	65204095	65204095	Splice_Site	T	C	.
KIRC	TCGA-B8-4151-01	PLEKHG3	ENST00000247226.7,ENST00000394691.1	chr14	65203570:65203609:65204073:65204093:65205459:65205573,	65204074	65204093	65204095	65204095	Splice_Site	T	C	.
KIRC	TCGA-BP-5185-01	AVIL	ENST00000257861.3,ENST00000549994.1,ENST00000548843.1,ENST00000537081.1,ENST00000549851.1	chr12	58204801:58204910:58207009:58207206:58207934:58208009,	58207010	58207206	58207208	58207208	Splice_Site	T	C	.
KIRC	TCGA-CJ-5682-01	ARHGAP35	ENST00000595822.1	chr19	47440576:47440665:47491245:47492932:47502560:47502666,	47491246	47492932	47491245	47491245	Splice_Site	G	C	.
KIRC	TCGA-B8-5546-01	IGSF22	ENST00000513874.1,ENST00000504981.1	chr11	18729350:18729543:18729753:18729842:18730933:18731230,	18729754	18729842	18729752	18729752	Splice_Site	A	G	.
KIRC	TCGA-B0-4827-01	PARP6	ENST00000260376.7,ENST00000565443.1,ENST00000564610.1	chr15	72535014:72535040:72542360:72542433:72543547:72543596,72535014:72535040:72542360:72542433:72543185:72543295,	72542361	72542433	72542434	72542434	Splice_Site	C	T	.
KIRC	TCGA-B0-5709-01	GSDMC	ENST00000522273.1,ENST00000276708.4	chr8	130763787:130763814:130764107:130764137:130764351:130764393,	130764108	130764137	130764139	130764140	Splice_Site	-	A	.
KIRC	TCGA-B0-5102-01	ALDH7A1	ENST00000409134.3,ENST00000497231.2,ENST00000503281.1	chr5	125889978:125890085:125891622:125891707:125894931:125894987,	125891623	125891707	125891622	125891622	Splice_Site	C	T	.
KIRC	TCGA-B0-5102-01	ATP2A2	ENST00000308664.6,ENST00000539276.2,ENST00000395494.2	chr12	110719485:110719712:110720408:110720426:110720517:110720600,	110720409	110720426	110720427	110720427	Splice_Site	G	C	.
KIRC	TCGA-B8-A54G-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156142616:156142797:156144612:156144731:156144876:156145023,	156144613	156144731	156144733	156144733	Splice_Site	T	C	.
KIRC	TCGA-B0-5700-01	ZFYVE27	ENST00000453958.2	chr10	99496939:99497082:99498233:99498431:99502850:99502921,99496882:99497078:99498233:99498431:99502850:99502921,	99498234	99498431	99498433	99498433	Splice_Site	T	C	.
KIRC	TCGA-B0-5700-01	L2HGDH	ENST00000421284.3	chr14	50712368:50712838:50713758:50713971:50732075:50732207,	50713759	50713971	50713972	50713972	Splice_Site	C	T	.
KIRC	TCGA-A3-3311-01	MAP3K7	ENST00000369329.3,ENST00000369320.1,ENST00000479630.1,ENST00000369332.3	chr6	91225626:91226400:91228165:91228281:91228976:91229038,	91228166	91228281	91228282	91228282	Splice_Site	C	A	.
KIRC	TCGA-B2-5636-01	RUFY2	ENST00000388768.2,ENST00000466493.1,ENST00000602465.1	chr10	70137931:70138427:70139180:70139278:70140988:70141013,70136609:70136729:70139180:70139278:70140988:70141013,	70139181	70139278	70139179	70139179	Splice_Site	A	T	.
KIRC	TCGA-CW-5589-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52663052	52663052	Splice_Site	C	A	.
KIRC	TCGA-CW-5589-01	CYB5R3	ENST00000402438.1,ENST00000361740.4,ENST00000352397.5,ENST00000396303.3,ENST00000470741.1,ENST00000438270.1,ENST00000407332.1,ENST00000407623.3	chr22	43023646:43023694:43024157:43024287:43026887:43026994,	43024158	43024287	43024289	43024289	Splice_Site	T	A	.
KIRC	TCGA-CW-5589-01	NUP85	ENST00000449421.2,ENST00000541827.1,ENST00000579324.1	chr17	73201814:73201889:73205917:73206080:73208086:73208157,	73205918	73206080	73205917	73205918	Splice_Site	-	A	.
KIRC	TCGA-CZ-5456-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000372249.1,ENST00000357304.4	chr9	134357112:134357195:134357757:134357949:134358096:134358294,	134357758	134357949	134357757	134357757	Splice_Site	G	A	.
KIRC	TCGA-CZ-5985-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439311	52439311	Splice_Site	C	A	.
KIRC	TCGA-BP-4964-01	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36255571:36255692:36257042:36257173:36257555:36257658,	36257043	36257173	36257042	36257042	Splice_Site	C	T	.
KIRC	TCGA-BP-4964-01	AGO2	ENST00000523609.1,ENST00000520412.1,ENST00000220592.5	chr8	141545566:141545668:141549418:141549553:141551262:141551457,	141549419	141549553	141549418	141549418	Splice_Site	C	T	.
KIRC	TCGA-B8-5549-01	MAP3K13	ENST00000443863.1,ENST00000438053.1,ENST00000424227.1,ENST00000446828.1,ENST00000535426.1,ENST00000265026.3	chr3	185190762:185191549:185195113:185195184:185198019:185198317,	185195114	185195184	185195185	185195185	Splice_Site	G	A	.
KIRC	TCGA-B0-5094-01	CDK14	ENST00000380050.3,ENST00000449528.1	chr7	90233531:90233563:90355880:90356126:90376995:90377040,	90355881	90356126	90355879	90355879	Splice_Site	A	T	.
KIRC	TCGA-B0-5094-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000269280.4	chr17	5421065:5421207:5424843:5425106:5433800:5434024,	5424844	5425106	5425107	5425107	Splice_Site	C	A	.
KIRC	TCGA-BP-4976-01	DNAJC18	ENST00000515277.1,ENST00000302060.5,ENST00000507405.1,ENST00000515581.1	chr5	138761900:138762046:138764226:138764372:138773060:138773247,	138764227	138764372	138764374	138764375	Splice_Site	-	A	.
KIRC	TCGA-BP-5009-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000337620.4	chr7	26245987:26246130:26248012:26248175:26251281:26251337,	26248013	26248175	26248177	26248177	Splice_Site	T	C	.
KIRC	TCGA-BP-5009-01	CBX3	ENST00000409747.1	chr7	26245987:26246130:26248085:26248175:26251281:26251337,	26248086	26248175	26248177	26248177	Splice_Site	T	C	.
KIRC	TCGA-BP-5009-01	TMBIM1	ENST00000437694.2,ENST00000445635.1,ENST00000465082.1,ENST00000258412.3,ENST00000396809.2,ENST00000444881.1,ENST00000439306.1	chr2	219142088:219142176:219142355:219142393:219142657:219142697,	219142356	219142393	219142394	219142395	Splice_Site	-	T	.
KIRC	TCGA-B0-5085-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000505285.1,ENST00000296702.5	chr5	145872482:145872601:145878098:145878249:145882937:145883102,	145878099	145878249	145878250	145878250	Splice_Site	G	A	.
KIRC	TCGA-B0-5085-01	AARS2	ENST00000244571.4	chr6	44270538:44270647:44270802:44270912:44271022:44271160,	44270803	44270912	44270802	44270802	Splice_Site	C	A	.
KIRC	TCGA-CJ-4636-01	METTL3	ENST00000544248.1,ENST00000544500.1,ENST00000298717.4	chr14	21967168:21967281:21967449:21967515:21967635:21967744,	21967450	21967515	21967449	21967449	Splice_Site	C	G	.
KIRC	TCGA-G6-A8L7-01	GABBR1	ENST00000377012.4,ENST00000376977.3,ENST00000355973.3,ENST00000377034.4,ENST00000472823.1,ENST00000494877.1,ENST00000377016.4,ENST00000491829.1	chr6	29573345:29573473:29574167:29574261:29574673:29574781,	29574168	29574261	29574167	29574167	Splice_Site	C	A	.
KIRC	TCGA-G6-A8L7-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135779037:135779204:135779797:135779841:135780967:135781526,	135779798	135779841	135779843	135779843	Splice_Site	T	C	.
KIRC	TCGA-BP-4963-01	EXOC1	ENST00000511971.1,ENST00000381295.2,ENST00000346134.7	chr4	56749988:56750094:56755053:56755098:56756388:56756552,	56755054	56755098	56755100	56755100	Splice_Site	T	-	.
KIRC	TCGA-EU-5907-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176305244:176305394:176305475:176305640:176306310:176306489,	176305476	176305640	176305475	176305475	Splice_Site	G	A	.
KIRC	TCGA-DV-5575-01	TATDN1	ENST00000520938.1,ENST00000520321.1,ENST00000523214.1,ENST00000517678.1,ENST00000519776.1,ENST00000523888.1,ENST00000519232.1,ENST00000522310.1,ENST00000521546.1,ENST00000523152.1,ENST00000522810.1,ENST00000521973.1,ENST00000605953.1,ENST00000519548.1,ENST00000276692.6	chr8	125520858:125520929:125527986:125528029:125528127:125528271,	125527987	125528029	125527986	125527986	Splice_Site	C	T	.
KIRC	TCGA-B0-5096-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188197	10188197	Splice_Site	G	T	.
KIRC	TCGA-B0-5096-01	COL4A5	ENST00000328300.6,ENST00000361603.2	chrX	107930711:107930924:107935977:107936155:107938036:107938151,	107935978	107936155	107935977	107935977	Splice_Site	G	T	.
KIRC	TCGA-B8-5158-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678806	52678806	Splice_Site	C	T	.
KIRC	TCGA-CJ-5683-01	ATP6V0E1	ENST00000517669.1	chr5	172410833:172410967:172421777:172421825:172461401:172461887,172410833:172410967:172421777:172421825:172447240:172447370,	172421778	172421825	172421776	172421776	Splice_Site	A	T	.
KIRC	TCGA-B8-5164-01	POMP	ENST00000380842.4,ENST00000460403.1	chr13	29236546:29236644:29238645:29238706:29242609:29242711,	29238646	29238706	29238707	29238707	Splice_Site	G	T	.
KIRC	TCGA-A3-3308-01	NEDD1	ENST00000411739.2	chr12	97301381:97301402:97311398:97311515:97313762:97313896,97306500:97306595:97311398:97311515:97313762:97313896,97301479:97301634:97311398:97311515:97313762:97313896,	97311399	97311515	97311397	97311404	Splice_Site	AGCAAAAG	-	p.77_splice
KIRC	TCGA-A3-3372-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90949253:90949303:90955480:90955594:90958367:90958523,	90955481	90955594	90955480	90955481	Splice_Site	CC	-	p.EV728_splice
KIRC	TCGA-A3-3372-01	NAT10	ENST00000257829.3,ENST00000531159.2	chr11	34162635:34162755:34163265:34163364:34163821:34163895,	34163266	34163364	34163264	34163268	Splice_Site	AGCTA	-	p.904_splice
KIRC	TCGA-B0-4823-01	SPTAN1	ENST00000372739.3,ENST00000372731.4	chr9	131389664:131389777:131390203:131390221:131392599:131392654,	131390204	131390221	131390202	131390217	Splice_Site	AGGACATACCTCCTCG	-	p.R2230_splice
KIRC	TCGA-B0-5095-01	RIN3	ENST00000556385.1,ENST00000216487.7	chr14	93022184:93022300:93043704:93043822:93081751:93081824,	93043705	93043822	93043822	93043824	Splice_Site	AGT	-	p.123_splice
KIRC	TCGA-B0-5698-01	NUP37	ENST00000543021.1,ENST00000251074.1,ENST00000551744.2,ENST00000551200.1,ENST00000552283.1	chr12	102494809:102494882:102505885:102506010:102512140:102512361,	102505886	102506010	102506003	102506011	Splice_Site	TCTTCTTCC	-	p.53_splice
KIRC	TCGA-BP-5190-01	EMILIN1	ENST00000433140.1,ENST00000380320.4	chr2	27307858:27307876:27308027:27308165:27308545:27309271,	27308028	27308165	27308027	27308032	Splice_Site	GGAGTG	-	p.GV859_splice
KIRP	TCGA-5P-A9KA-01	CRMP1	ENST00000506216.1,ENST00000512574.1,ENST00000324989.7,ENST00000511535.1,ENST00000397890.2	chr4	5837641:5837812:5838491:5838633:5841248:5841405,	5838492	5838633	5838634	5838634	Splice_Site	C	A	.
KIRP	TCGA-5P-A9KA-01	C19orf57	ENST00000346736.2,ENST00000591586.1,ENST00000454313.1,ENST00000586783.1	chr19	14003598:14003703:14003954:14004036:14006184:14006359,	14003955	14004036	14004037	14004037	Splice_Site	C	T	.
KIRP	TCGA-A4-7585-01	DARS	ENST00000537273.1	chr2	136718965:136719068:136736843:136736936:136740966:136741017,136718965:136719068:136736843:136736936:136742972:136743062,	136736844	136736936	136736937	136736937	Splice_Site	C	A	.
KIRP	TCGA-BQ-5878-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596669	136596669	Splice_Site	C	T	.
KIRP	TCGA-BQ-5878-01	ZNF318	ENST00000318149.3,ENST00000605935.1,ENST00000361428.2	chr6	43316061:43316363:43320114:43320214:43322401:43323883,	43320115	43320214	43320114	43320114	Splice_Site	C	-	.
KIRP	TCGA-IA-A83T-01	GPS1	ENST00000580141.1,ENST00000578552.1,ENST00000578279.1,ENST00000584460.1,ENST00000355130.2,ENST00000320548.4,ENST00000306823.6,ENST00000392358.2	chr17	80012827:80012851:80013037:80013098:80013615:80013701,	80013038	80013098	80013100	80013100	Splice_Site	T	C	.
KIRP	TCGA-IZ-A6M8-01	MEGF10	ENST00000508365.1,ENST00000418761.2,ENST00000274473.6,ENST00000503335.2	chr5	126676221:126676322:126705601:126705694:126732223:126732470,	126705602	126705694	126705695	126705695	Splice_Site	G	T	.
KIRP	TCGA-5P-A9KE-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000478340.1,ENST00000467020.1,ENST00000464112.1	chr6	35437212:35437306:35437955:35438128:35438356:35438417,	35437956	35438128	35437954	35437954	Splice_Site	A	G	.
KIRP	TCGA-GL-A9DC-01	GTF2A2	ENST00000559141.1	chr15	59934412:59934461:59942867:59942963:59944404:59944525,59934412:59934461:59942867:59942963:59949604:59949674,	59942868	59942963	59942867	59942867	Splice_Site	C	A	.
KIRP	TCGA-GL-A9DC-01	GTF2A2	ENST00000396064.3	chr15	59934412:59934461:59942867:59942972:59944404:59944525,59931311:59931356:59942867:59942972:59944404:59944525,	59942868	59942972	59942867	59942867	Splice_Site	C	A	.
KIRP	TCGA-UZ-A9PK-01	DGKQ	ENST00000273814.3	chr4	959278:959317:959715:959866:960253:960315,	959716	959866	959714	959715	Splice_Site	-	C	.
KIRP	TCGA-J7-6720-01	TSACC	ENST00000368254.1,ENST00000470342.1	chr1	156308313:156308396:156309424:156309582:156314370:156314499,	156309425	156309582	156309583	156309583	Splice_Site	G	C	.
KIRP	TCGA-J7-6720-01	TSACC	ENST00000368253.2	chr1	156308313:156308396:156309525:156309582:156314370:156314499,	156309526	156309582	156309583	156309583	Splice_Site	G	C	.
KIRP	TCGA-J7-6720-01	CYP11B1	ENST00000377675.3,ENST00000292427.4	chr8	143956372:143956570:143956649:143956728:143957127:143957213,	143956650	143956728	143956729	143956729	Splice_Site	C	G	.
KIRP	TCGA-J7-6720-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47542409:47542445:47542788:47542851:47544564:47544627,	47542789	47542851	47542788	47542788	Splice_Site	G	A	.
KIRP	TCGA-DZ-6132-01	TTYH1	ENST00000376531.3,ENST00000301194.4,ENST00000376530.3,ENST00000391739.3,ENST00000476757.1,ENST00000487134.1,ENST00000472198.1	chr19	54933372:54933584:54937849:54937945:54940484:54940531,	54937850	54937945	54937848	54937848	Splice_Site	A	G	.
KIRP	TCGA-DZ-6132-01	BAIAP2	ENST00000392411.3,ENST00000572498.1,ENST00000321300.6,ENST00000428708.2	chr17	79080544:79080707:79082274:79082309:79089569:79089617,	79082275	79082309	79082274	79082274	Splice_Site	G	-	.
KIRP	TCGA-B9-A5W8-01	ACSF2	ENST00000510262.1	chr17	48541178:48541270:48541578:48541655:48541886:48541960,	48541579	48541655	48541577	48541577	Splice_Site	A	G	.
KIRP	TCGA-B9-A5W8-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560042	19560043	Splice_Site	-	T	.
KIRP	TCGA-UZ-A9PX-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000396819.3,ENST00000598717.1,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000602240.1	chr19	41117279:41117300:41117764:41117890:41117978:41118098,	41117765	41117890	41117892	41117892	Splice_Site	T	A	.
KIRP	TCGA-A4-A6HP-01	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113473617:113473721:113474213:113474264:113477658:113477723,	113474214	113474264	113474213	113474213	Splice_Site	G	A	.
KIRP	TCGA-G7-6792-01	PABPC1	ENST00000518716.1,ENST00000318607.5,ENST00000519004.1,ENST00000522387.1,ENST00000517403.1	chr8	101719016:101719033:101719114:101719225:101721360:101721451,	101719115	101719225	101719226	101719226	Splice_Site	C	G	.
KIRP	TCGA-A4-7286-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596669	136596669	Splice_Site	C	T	.
KIRP	TCGA-A4-7286-01	ATP10A	ENST00000356865.6	chr15	25953343:25953447:25958820:25959388:25961876:25962071,	25958821	25959388	25959389	25959389	Splice_Site	C	G	.
KIRP	TCGA-Y8-A896-01	CHRND	ENST00000258385.3,ENST00000543200.1,ENST00000446616.1	chr2	233393210:233393366:233394648:233394849:233396061:233396173,233393571:233393681:233394648:233394849:233396061:233396173,	233394649	233394849	233394851	233394851	Splice_Site	T	C	.
KIRP	TCGA-Y8-A896-01	TTC16	ENST00000393748.4,ENST00000373289.3	chr9	130479612:130479703:130479907:130480051:130482356:130482457,	130479908	130480051	130480052	130480052	Splice_Site	G	A	.
KIRP	TCGA-B9-4116-01	IGSF9B	ENST00000321016.8,ENST00000527648.2,ENST00000533871.2	chr11	133801965:133802108:133805511:133805657:133805947:133806089,	133805512	133805657	133805658	133805658	Splice_Site	C	T	.
KIRP	TCGA-SX-A7SP-01	ARIH2	ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000465217.1,ENST00000452385.1	chr3	49004638:49004708:49005966:49006088:49008027:49008077,	49005967	49006088	49005966	49005966	Splice_Site	G	T	.
KIRP	TCGA-SX-A7SP-01	PPP2R3A	ENST00000490467.1,ENST00000334546.2,ENST00000264977.3	chr3	135789319:135789394:135797208:135797295:135801106:135801263,	135797209	135797295	135797207	135797208	Splice_Site	AG	-	.
KIRP	TCGA-SX-A7SS-01	DONSON	ENST00000457359.1,ENST00000442660.1,ENST00000303071.5,ENST00000303113.6,ENST00000417871.1,ENST00000437395.1	chr21	34950547:34950750:34951655:34951868:34953607:34953693,	34951656	34951868	34951869	34951869	Splice_Site	C	A	.
KIRP	TCGA-BQ-5883-01	DCPS	ENST00000263579.4	chr11	126176464:126176639:126201299:126201445:126208180:126208294,	126201300	126201445	126201299	126201299	Splice_Site	G	T	.
KIRP	TCGA-Y8-A897-01	FAM20C	ENST00000313766.5	chr7	195624:195732:208897:208976:286380:286473,	208898	208976	208977	208977	Splice_Site	G	A	.
KIRP	TCGA-Y8-A897-01	PTPRM	ENST00000332175.8,ENST00000400060.4	chr18	7567816:7567889:7774146:7774269:7888103:7888375,	7774147	7774269	7774145	7774145	Splice_Site	A	C	.
KIRP	TCGA-Y8-A897-01	SETDB1	ENST00000368963.1	chr1	150913804:150913904:150915038:150915164:150916395:150916469,	150915039	150915164	150915166	150915170	Splice_Site	TATGT	-	.
KIRP	TCGA-GL-A59T-01	RAPGEF1	ENST00000372189.3,ENST00000372195.1,ENST00000372190.3	chr9	134504488:134504641:134505622:134505711:134514021:134514173,	134505623	134505711	134505712	134505712	Splice_Site	C	T	.
KIRP	TCGA-GL-A59T-01	KIN	ENST00000535925.1,ENST00000543003.1,ENST00000460089.1,ENST00000379562.4	chr10	7808015:7808066:7811178:7811308:7816793:7816841,	7811179	7811308	7811178	7811178	Splice_Site	C	T	.
KIRP	TCGA-BQ-7061-01	LSR	ENST00000360798.3	chr19	35753448:35753595:35757261:35757435:35757581:35757641,35749847:35749967:35757261:35757435:35757581:35757641,	35757262	35757435	35757260	35757260	Splice_Site	A	G	.
KIRP	TCGA-BQ-7061-01	KIF4A	ENST00000374403.3	chrX	69626742:69626925:69637737:69637854:69639510:69639633,	69637738	69637854	69637856	69637856	Splice_Site	T	C	.
KIRP	TCGA-B1-A657-01	FARP1	ENST00000376586.2,ENST00000319562.6	chr13	98795733:98795746:98865473:98865667:98996015:98996066,	98865474	98865667	98865472	98865472	Splice_Site	A	G	.
KIRP	TCGA-2Z-A9J6-01	USP20	ENST00000358355.1,ENST00000372429.3,ENST00000315480.4	chr9	132623821:132623891:132625464:132625578:132627581:132627660,	132625465	132625578	132625464	132625464	Splice_Site	G	T	.
KIRP	TCGA-5P-A9JU-01	BCKDK	ENST00000394950.3,ENST00000484226.2,ENST00000287507.3,ENST00000394951.1,ENST00000567530.1,ENST00000219794.6,ENST00000566568.1	chr16	31121424:31121445:31121525:31121645:31121721:31121820,	31121526	31121645	31121525	31121525	Splice_Site	G	T	.
KIRP	TCGA-B1-A47M-01	BTN2A1	ENST00000429381.1,ENST00000312541.5,ENST00000469185.1	chr6	26458195:26458370:26458834:26458946:26459708:26460014,	26458835	26458946	26458834	26458834	Splice_Site	G	A	.
KIRP	TCGA-IA-A83S-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38087033:38087184:38101232:38101343:38103659:38103859,	38101233	38101343	38101345	38101345	Splice_Site	T	A	.
KIRP	TCGA-A4-7915-01	SLC36A4	ENST00000524875.1,ENST00000529184.1,ENST00000326402.4	chr11	92916000:92916060:92917595:92917686:92918856:92918980,	92917596	92917686	92917687	92917687	Splice_Site	C	A	.
KIRP	TCGA-B1-5398-01	AGR2	ENST00000401412.1,ENST00000419304.2,ENST00000450569.1,ENST00000419572.2	chr7	16834561:16834643:16837254:16837318:16839367:16839441,	16837255	16837318	16837319	16837319	Splice_Site	C	A	.
KIRP	TCGA-B1-5398-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20767937:20768078:20778605:20778762:20782499:20782697,	20778606	20778762	20778604	20778604	Splice_Site	A	G	.
KIRP	TCGA-B1-5398-01	PPP2R5C	ENST00000557621.1,ENST00000445439.3,ENST00000553730.1,ENST00000334743.5,ENST00000557095.1,ENST00000350249.3	chr14	102252457:102252520:102323022:102323222:102348497:102348542,102276241:102276373:102323022:102323222:102348497:102348542,	102323023	102323222	102323022	102323022	Splice_Site	G	A	.
KIRP	TCGA-GL-A9DD-01	LMNA	ENST00000368299.3,ENST00000361308.4,ENST00000368297.1,ENST00000448611.2,ENST00000347559.2,ENST00000368301.2,ENST00000392353.3,ENST00000368300.4,ENST00000473598.2	chr1	156104611:156104766:156104977:156105103:156105691:156105912,	156104978	156105103	156105104	156105104	Splice_Site	G	A	.
KIRP	TCGA-F9-A7VF-01	TRAP1	ENST00000538171.1,ENST00000246957.5	chr16	3726094:3726146:3727498:3727659:3729719:3729791,	3727499	3727659	3727498	3727498	Splice_Site	C	G	.
KIRP	TCGA-UZ-A9PJ-01	DNMT3A	ENST00000482935.1,ENST00000402667.1,ENST00000321117.5,ENST00000466601.1,ENST00000264709.3,ENST00000380746.4	chr2	25459842:25459874:25461998:25462084:25463170:25463319,	25461999	25462084	25461998	25461998	Splice_Site	C	A	.
KIRP	TCGA-5P-A9K6-01	ECD	ENST00000453402.1,ENST00000484976.2	chr10	74916346:74916413:74920191:74920309:74927623:74927706,	74920192	74920309	74920311	74920311	Splice_Site	T	G	.
KIRP	TCGA-A4-7734-01	DNAJB12	ENST00000394903.2,ENST00000444643.2	chr10	74093838:74094375:74095537:74095689:74096281:74096454,	74095538	74095689	74095536	74095536	Splice_Site	A	T	.
KIRP	TCGA-A4-7734-01	PPIB	ENST00000561048.1	chr15	64452311:64452396:64454239:64454353:64455050:64455205,	64454240	64454353	64454355	64454355	Splice_Site	T	C	.
KIRP	TCGA-2K-A9WE-01	C1orf54	ENST00000369099.3,ENST00000369102.1,ENST00000369098.3	chr1	150245201:150245266:150246489:150246573:150248149:150248208,	150246490	150246573	150246488	150246488	Splice_Site	A	G	.
KIRP	TCGA-SX-A71W-01	GAA	ENST00000572080.1,ENST00000302262.3,ENST00000390015.3	chr17	78084800:78084824:78085781:78085899:78086376:78086510,	78085782	78085899	78085901	78085901	Splice_Site	T	G	.
KIRP	TCGA-B3-3926-01	MRC2	ENST00000446119.2	chr17	60765861:60766025:60766212:60766321:60767254:60767294,	60766213	60766321	60766323	60766323	Splice_Site	T	C	.
KIRP	TCGA-MH-A856-01	DLAT	ENST00000533297.1,ENST00000280346.6	chr11	111899238:111899363:111899515:111899669:111904127:111904254,	111899516	111899669	111899514	111899514	Splice_Site	A	T	.
KIRP	TCGA-5P-A9K3-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000526707.1	chr11	9182259:9182412:9187382:9187514:9191402:9191496,	9187383	9187514	9187516	9187517	Splice_Site	-	AGAA	.
KIRP	TCGA-BQ-5886-01	EMID1	ENST00000404820.3,ENST00000430127.1,ENST00000484039.1,ENST00000334018.6,ENST00000404755.3	chr22	29622478:29622540:29627008:29627129:29627581:29627604,	29627009	29627129	29627008	29627008	Splice_Site	G	T	.
KIRP	TCGA-BQ-7048-01	ENTPD5	ENST00000557325.1,ENST00000553284.1,ENST00000334696.6	chr14	74443035:74443115:74443726:74443762:74444001:74444077,	74443727	74443762	74443764	74443765	Splice_Site	-	A	.
KIRP	TCGA-B3-4104-01	DMXL2	ENST00000560421.1,ENST00000543779.2,ENST00000449909.3,ENST00000251076.5	chr15	51856321:51856457:51857284:51857363:51860683:51860755,	51857285	51857363	51857284	51857284	Splice_Site	C	A	.
KIRP	TCGA-P4-A5EA-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057329	30057329	Splice_Site	G	A	.
KIRP	TCGA-P4-A5EA-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365077	37365078	Splice_Site	AG	-	.
KIRP	TCGA-HE-A5NI-01	MSH3	ENST00000512258.1,ENST00000265081.6	chr5	80024669:80024784:80037282:80037367:80040324:80040434,	80037283	80037367	80037368	80037368	Splice_Site	G	C	.
KIRP	TCGA-P4-A5EB-01	METTL5	ENST00000392640.2,ENST00000409965.1,ENST00000260953.5,ENST00000410097.1,ENST00000409837.1	chr2	170668979:170669016:170677601:170677783:170678452:170678567,170676070:170676153:170677601:170677783:170678452:170678567,	170677602	170677783	170677784	170677784	Splice_Site	C	A	.
KIRP	TCGA-P4-A5EB-01	TRIM69	ENST00000561043.1	chr15	45028763:45028908:45048565:45048661:45051837:45051860,	45048566	45048661	45048565	45048565	Splice_Site	G	C	.
KIRP	TCGA-AL-3472-01	TSGA10	ENST00000488960.1,ENST00000539964.1,ENST00000393482.3,ENST00000409564.2,ENST00000393483.3,ENST00000355053.4,ENST00000410001.1	chr2	99688268:99688337:99689480:99689536:99695121:99695276,	99689481	99689536	99689479	99689479	Splice_Site	A	C	.
KIRP	TCGA-B1-A656-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176305244:176305394:176305475:176305640:176306310:176306489,	176305476	176305640	176305475	176305475	Splice_Site	G	A	.
KIRP	TCGA-2Z-A9J3-01	PARD3B	ENST00000358768.2,ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205410722:205410842:205550903:205551005:205829874:205830046,	205550904	205551005	205550903	205550903	Splice_Site	G	-	.
KIRP	TCGA-DW-5560-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306336	179306336	Splice_Site	C	T	.
KIRP	TCGA-Y8-A898-01	PALLD	ENST00000335742.7,ENST00000505667.1,ENST00000507699.1,ENST00000507735.1,ENST00000512127.1,ENST00000261509.6	chr4	169837057:169837178:169842684:169842892:169845405:169845571,	169842685	169842892	169842683	169842683	Splice_Site	A	G	.
KIRP	TCGA-Y8-A898-01	CHMP1A	ENST00000549328.1,ENST00000253475.5,ENST00000397901.3,ENST00000551981.1,ENST00000547614.1,ENST00000535997.2	chr16	89713610:89713739:89715758:89715905:89717976:89718054,	89715759	89715905	89715757	89715757	Splice_Site	A	G	.
KIRP	TCGA-G7-A8LB-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000427635.2,ENST00000412272.2	chr10	69797849:69797926:69804160:69804320:69832639:69832854,	69804161	69804320	69804160	69804160	Splice_Site	C	T	.
KIRP	TCGA-A4-7583-01	USP6NL	ENST00000609104.1,ENST00000277575.5,ENST00000379237.2	chr10	11502508:11505848:11523768:11523921:11526969:11527069,	11523769	11523921	11523768	11523768	Splice_Site	C	G	.
KIRP	TCGA-A4-7583-01	RBM23	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	chr14	23374631:23374662:23374814:23374868:23375403:23375577,	23374815	23374868	23374814	23374814	Splice_Site	C	G	.
KIRP	TCGA-AT-A5NU-01	MFSD11	ENST00000588768.1,ENST00000588670.1	chr17	74738100:74738130:74738258:74738355:74739479:74739538,74738100:74738130:74738258:74738355:74740403:74740548,	74738259	74738355	74738356	74738356	Splice_Site	G	A	.
KIRP	TCGA-AT-A5NU-01	CATSPERG	ENST00000412458.2,ENST00000410018.1,ENST00000409410.2,ENST00000489693.2,ENST00000409235.3,ENST00000471517.1,ENST00000312265.5	chr19	38849151:38849201:38850109:38850221:38851128:38851220,	38850110	38850221	38850108	38850108	Splice_Site	A	T	.
KIRP	TCGA-BQ-5890-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143047	47143047	Splice_Site	T	C	.
KIRP	TCGA-B9-4115-01	SEC24A	ENST00000398844.2,ENST00000322887.4	chr5	133996808:133997276:134002512:134002686:134007498:134007576,	134002513	134002686	134002687	134002687	Splice_Site	G	A	.
KIRP	TCGA-J7-8537-01	EIF4A1	ENST00000582169.1,ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000578476.1,ENST00000582746.1,ENST00000581384.1,ENST00000580888.1,ENST00000577269.1,ENST00000584901.1,ENST00000585024.1,ENST00000583802.1	chr17	7477863:7477996:7478436:7478576:7479841:7479893,	7478437	7478576	7478578	7478578	Splice_Site	T	G	.
KIRP	TCGA-HE-7130-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44833910:44833960:44870205:44870264:44879854:44879975,	44870206	44870264	44870205	44870205	Splice_Site	G	C	.
KIRP	TCGA-4A-A93W-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112765959:112766052:112767524:112767643:112776989:112777099,	112767525	112767643	112767644	112767644	Splice_Site	G	C	.
KIRP	TCGA-SX-A7SM-01	FNIP2	ENST00000264433.6,ENST00000379346.3	chr4	159791510:159791621:159812597:159812798:159816901:159817017,	159812598	159812798	159812799	159812800	Splice_Site	-	T	.
KIRP	TCGA-B9-A8YI-01	NUP210	ENST00000254508.5	chr3	13381735:13381798:13383247:13383383:13383495:13383623,	13383248	13383383	13383246	13383246	Splice_Site	A	G	.
KIRP	TCGA-B9-A8YI-01	BICC1	ENST00000373886.3	chr10	60548129:60548183:60549021:60549216:60549441:60549693,	60549022	60549216	60549020	60549020	Splice_Site	A	G	.
KIRP	TCGA-B9-A8YI-01	SSH1	ENST00000546697.1,ENST00000360239.3,ENST00000551165.1,ENST00000326495.5,ENST00000326470.5	chr12	109210813:109210935:109212024:109212089:109217033:109217137,	109212025	109212089	109212091	109212091	Splice_Site	T	A	.
KIRP	TCGA-BQ-5885-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92118685:92118737:92119027:92119225:92120585:92120816,	92119028	92119225	92119227	92119227	Splice_Site	T	C	.
KIRP	TCGA-BQ-5885-01	PEX1	ENST00000496420.1	chr7	92118685:92118737:92119032:92119225:92120585:92120816,	92119033	92119225	92119227	92119227	Splice_Site	T	C	.
KIRP	TCGA-BQ-5885-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17401959	17401959	Splice_Site	G	T	.
KIRP	TCGA-UZ-A9PU-01	SETDB2	ENST00000258672.5,ENST00000354234.4	chr13	50035232:50035298:50041999:50042096:50050611:50050834,	50042000	50042096	50041999	50041999	Splice_Site	G	A	.
KIRP	TCGA-B9-A44B-01	GDNF	ENST00000515058.1	chr5	37816127:37816237:37834825:37834924:37839608:37839782,	37834826	37834924	37834925	37834925	Splice_Site	C	A	.
KIRP	TCGA-5P-A9K2-01	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000538472.1,ENST00000420015.2	chr16	14702914:14702980:14704500:14704666:14711446:14711507,	14704501	14704666	14704668	14704668	Splice_Site	T	G	.
KIRP	TCGA-P4-AAVM-01	ANKRA2	ENST00000515804.1,ENST00000296785.3	chr5	72853399:72853465:72856954:72857113:72858417:72858810,	72856955	72857113	72857114	72857114	Splice_Site	C	T	.
KIRP	TCGA-A4-8630-01	ZNF346	ENST00000503425.1	chr5	176468126:176468230:176471392:176471534:176477751:176477893,	176471393	176471534	176471535	176471535	Splice_Site	G	C	.
KIRP	TCGA-A4-8630-01	ZNF346	ENST00000511834.1	chr5	176468778:176468871:176471389:176471534:176477751:176477893,176468778:176468871:176471389:176471534:176477703:176477937,	176471390	176471534	176471535	176471535	Splice_Site	G	C	.
KIRP	TCGA-2Z-A9JT-01	POLL	ENST00000429502.1,ENST00000339310.3,ENST00000370158.3	chr10	103342519:103342648:103343264:103343438:103344358:103344477,103342519:103342648:103343264:103343438:103344634:103344676,103342519:103342648:103343264:103343438:103345618:103345913,103342519:103342648:103343264:103343438:103347002:103347139,	103343265	103343438	103343263	103343263	Splice_Site	A	C	.
KIRP	TCGA-A4-8515-01	RAD18	ENST00000264926.2	chr3	8953995:8954056:8955327:8955404:8977554:8977739,	8955328	8955404	8955405	8955406	Splice_Site	-	TG	.
KIRP	TCGA-A4-8311-01	PEX14	ENST00000356607.4,ENST00000491661.2,ENST00000538836.1	chr1	10659294:10659423:10678388:10678474:10683075:10683178,	10678389	10678474	10678475	10678475	Splice_Site	G	A	.
KIRP	TCGA-2Z-A9JE-01	ATP1A2	ENST00000392233.3,ENST00000447527.1,ENST00000361216.3,ENST00000472488.1	chr1	160100211:160100387:160104273:160104410:160104934:160105085,	160104274	160104410	160104412	160104412	Splice_Site	T	G	.
KIRP	TCGA-Y8-A8RY-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878551	190878551	Splice_Site	A	G	.
KIRP	TCGA-AL-3466-01	M6PR	ENST00000000412.3,ENST00000543834.1	chr12	9096025:9096131:9096396:9096506:9098013:9098075,	9096397	9096506	9096395	9096395	Splice_Site	A	G	.
KIRP	TCGA-A4-8312-01	ATP10A	ENST00000356865.6,ENST00000555815.1	chr15	25971097:25971229:25972306:25972413:25981202:25981288,	25972307	25972413	25972305	25972305	Splice_Site	A	T	.
KIRP	TCGA-IZ-A6M9-01	CACNB1	ENST00000577582.1	chr17	37340577:37340636:37341036:37341117:37342748:37342825,	37341037	37341117	37341119	37341119	Splice_Site	T	A	.
KIRP	TCGA-G7-6796-01	SP100	ENST00000264052.5,ENST00000340126.4,ENST00000409112.1	chr2	231334729:231334813:231338038:231338155:231339108:231339162,	231338039	231338155	231338157	231338157	Splice_Site	T	-	.
KIRP	TCGA-G7-6796-01	SP100	ENST00000452345.1	chr2	231334729:231334813:231338098:231338155:231339108:231339162,	231338099	231338155	231338157	231338157	Splice_Site	T	-	.
KIRP	TCGA-A4-A5Y0-01	BRD2	ENST00000395289.2,ENST00000482914.1,ENST00000449085.2,ENST00000374831.4,ENST00000607833.1,ENST00000443797.2,ENST00000449025.1,ENST00000374825.4,ENST00000395287.1	chr6	32944189:32944241:32944338:32944713:32945218:32945347,	32944339	32944713	32944714	32944714	Splice_Site	G	A	.
KIRP	TCGA-AL-7173-01	MND1	ENST00000509752.1,ENST00000240488.3	chr4	154318370:154318485:154330122:154330167:154335902:154336017,	154330123	154330167	154330168	154330168	Splice_Site	G	C	.
KIRP	TCGA-A4-8098-01	AP1G2	ENST00000465445.2,ENST00000397120.3,ENST00000308724.5,ENST00000535852.2,ENST00000460049.2	chr14	24032681:24032711:24032792:24032847:24032924:24032952,	24032793	24032847	24032848	24032848	Splice_Site	C	T	.
KIRP	TCGA-A4-8098-01	PITPNC1	ENST00000581322.1,ENST00000335257.6,ENST00000578527.1,ENST00000580974.1,ENST00000299954.9	chr17	65628258:65628354:65665623:65665779:65671594:65671658,	65665624	65665779	65665781	65665781	Splice_Site	T	C	.
KIRP	TCGA-KV-A6GD-01	PSG5	ENST00000599812.1,ENST00000407356.1,ENST00000366175.3,ENST00000342951.6	chr19	43674206:43674290:43679366:43679621:43680021:43680300,	43679367	43679621	43679366	43679366	Splice_Site	C	T	.
KIRP	TCGA-EV-5901-01	SLC22A5	ENST00000475308.1,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1,ENST00000447841.1	chr5	131728124:131728307:131729367:131729503:131729876:131729964,	131729368	131729503	131729504	131729504	Splice_Site	G	A	.
KIRP	TCGA-MH-A55Z-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5	chr11	65318872:65318945:65319018:65319035:65319442:65319628,	65319019	65319035	65319017	65319017	Splice_Site	A	T	.
KIRP	TCGA-A4-7288-01	ENTPD6	ENST00000433417.1,ENST00000360031.2,ENST00000354989.5,ENST00000376666.3,ENST00000376652.4	chr20	25199185:25199250:25201867:25201969:25203473:25203519,	25201868	25201969	25201971	25201971	Splice_Site	T	A	.
KIRP	TCGA-2Z-A9JL-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000530582.1,ENST00000533792.1	chr11	7656782:7656824:7660962:7661101:7662709:7662851,	7660963	7661101	7660962	7660962	Splice_Site	G	A	.
KIRP	TCGA-2Z-A9JL-01	INPP5F	ENST00000361976.2	chr10	121565871:121565992:121567443:121567572:121569611:121569729,	121567444	121567572	121567442	121567445	Splice_Site	TAGC	-	.
KIRP	TCGA-2Z-A9JL-01	INPP5F	ENST00000361976.2	chr10	121565871:121565992:121567443:121567572:121569611:121569729,	121567444	121567572	121567442	121567447	Splice_Site	TTTAGC	-	.
KIRP	TCGA-BQ-5876-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	185976259:185976414:185984290:185984569:185985089:185985371,	185984291	185984569	185984290	185984290	Splice_Site	G	A	.
KIRP	TCGA-B9-4113-01	PRKRIP1	ENST00000482549.1,ENST00000397912.3,ENST00000477886.1,ENST00000482465.1,ENST00000496391.1,ENST00000354783.4,ENST00000469763.1	chr7	102016665:102016769:102039994:102040095:102045044:102045072,102038066:102038145:102039994:102040095:102045044:102045072,	102039995	102040095	102040096	102040096	Splice_Site	G	A	.
KIRP	TCGA-PJ-A8JU-01	SH3D21	ENST00000312808.4,ENST00000373139.2,ENST00000505871.1,ENST00000453908.2,ENST00000480549.1	chr1	36772767:36772886:36773117:36773208:36773370:36773426,	36773118	36773208	36773209	36773209	Splice_Site	G	A	.
KIRP	TCGA-PJ-A8JU-01	KLK3	ENST00000601812.1,ENST00000601349.1,ENST00000422986.2,ENST00000595952.1,ENST00000326003.2,ENST00000595392.1,ENST00000596185.1	chr19	51361554:51361571:51361714:51361851:51363227:51363263,	51361715	51361851	51361852	51361853	Splice_Site	-	TTT	.
KIRP	TCGA-A4-8630-01	SUPT16H	ENST00000216297.2,ENST00000557394.1	chr14	21819637:21820977:21821646:21821724:21821861:21821991,	21821647	21821724	21821646	21821648	Splice_Site	CCT	-	p.K999_splice
KIRP	TCGA-B9-4116-01	MAT2A	ENST00000481412.1,ENST00000409017.1,ENST00000306434.3	chr2	85768755:85768868:85768951:85769095:85769277:85769496,	85768952	85769095	85769094	85769097	Splice_Site	AAGT	-	p.183_splice
KIRP	TCGA-DW-7838-01	MMRN2	ENST00000474994.2,ENST00000610081.1,ENST00000372027.5,ENST00000609457.1	chr10	88704120:88704192:88704944:88705025:88705126:88705233,	88704945	88705025	88705024	88705026	Splice_Site	ATC	-	p.134_splice
KIRP	TCGA-A4-A57E-01	GALC	ENST00000474294.2,ENST00000261304.2,ENST00000554372.1,ENST00000557316.1	chr14	88454487:88454551:88454798:88454867:88459313:88459466,	88454799	88454867	88454869	88454870	Splice_Site	-	A	.
KIRP	TCGA-AL-3472-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	469321:469422:470423:470525:472897:473008,	470424	470525	470423	470423	Splice_Site	C	A	.
KIRP	TCGA-DW-5560-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306335	179306335	Splice_Site	A	G	.
KIRP	TCGA-J7-6720-01	MYO10	ENST00000507288.1	chr5	16818117:16818276:16877717:16877816:16935896:16936047,	16877718	16877816	16877717	16877717	Splice_Site	C	G	.
KIRP	TCGA-BQ-7044-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28000020:28000618:28090104:28090198:28096527:28096621,	28090105	28090198	28090200	28090200	Splice_Site	T	A	.
KIRP	TCGA-BQ-7049-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1	chr11	47827704:47827864:47828621:47828692:47829947:47830081,	47828622	47828692	47828693	47828693	Splice_Site	C	G	.
KIRP	TCGA-BQ-7062-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6946083	6946083	Splice_Site	C	T	.
KIRP	TCGA-A4-8517-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960073	135960073	Splice_Site	C	T	.
KIRP	TCGA-A4-8517-01	RBMX	ENST00000567262.1	chrX	135958758:135958814:135960073:135960123:135961175:135961282,	135960074	135960123	135960073	135960073	Splice_Site	C	T	.
KIRP	TCGA-DW-7834-01	CHP1	ENST00000560784.1,ENST00000392151.2,ENST00000334660.5,ENST00000560397.1	chr15	41523501:41523647:41535864:41535937:41549107:41549188,	41535865	41535937	41535939	41535939	Splice_Site	T	C	.
KIRP	TCGA-B9-5155-01	ATXN2	ENST00000550889.1,ENST00000482777.1,ENST00000535949.1	chr12	111894024:111894060:111895017:111895163:111907911:111908044,	111895018	111895163	111895017	111895017	Splice_Site	C	G	.
KIRP	TCGA-A4-7286-01	EDA	ENST00000503592.1,ENST00000524573.1,ENST00000374552.4,ENST00000374553.2	chrX	69176876:69176982:69243067:69243091:69247706:69247886,	69243068	69243091	69243092	69243092	Splice_Site	G	C	.
KIRP	TCGA-A4-7828-01	PKIB	ENST00000258014.3	chr6	122996222:122996289:123022584:123022645:123038931:123039108,	123022585	123022645	123022647	123022647	Splice_Site	T	C	.
KIRP	TCGA-BQ-5892-01	FGGY	ENST00000430447.1	chr1	60132954:60133075:60139710:60139805:60146350:60146667,60132954:60133075:60139710:60139805:60223602:60223664,60132954:60133075:60139710:60139805:60163319:60163412,	60139711	60139805	60139806	60139806	Splice_Site	G	C	.
KIRP	TCGA-EV-5902-01	GSN	ENST00000432226.1,ENST00000373808.2,ENST00000436847.1,ENST00000341272.2,ENST00000545652.1,ENST00000412819.1,ENST00000394353.2,ENST00000373818.4,ENST00000373823.3,ENST00000449733.1	chr9	124073063:124073123:124074616:124074766:124076211:124076301,	124074617	124074766	124074615	124074615	Splice_Site	A	T	.
KIRP	TCGA-A4-8630-01	FRG1	ENST00000533157.1,ENST00000514482.1,ENST00000531991.2,ENST00000226798.4	chr4	190873316:190873442:190874222:190874280:190876191:190876305,	190874223	190874280	190874221	190874221	Splice_Site	A	G	.
KIRP	TCGA-B3-3926-01	UBAP2	ENST00000421278.2	chr9	33956076:33956144:33960823:33960876:33971648:33971752,	33960824	33960876	33960823	33960823	Splice_Site	C	G	.
KIRP	TCGA-EV-5901-01	FBRS	ENST00000356166.6,ENST00000287468.5,ENST00000395073.2	chr16	30676626:30676722:30676958:30677027:30677832:30677862,	30676959	30677027	30676958	30676958	Splice_Site	G	C	.
KIRP	TCGA-BQ-5886-01	DAPP1	ENST00000512369.1	chr4	100784926:100785012:100787190:100787278:100789273:100789871,	100787191	100787278	100787280	100787280	Splice_Site	T	G	.
KIRP	TCGA-BQ-5886-01	BOD1L1	ENST00000040738.5,ENST00000511119.1	chr4	13589322:13589395:13590345:13590416:13592009:13592070,	13590346	13590416	13590417	13590417	Splice_Site	C	A	.
KIRP	TCGA-G7-6793-01	CUTA	ENST00000607266.1,ENST00000482684.1,ENST00000374484.4,ENST00000479249.1,ENST00000374496.3,ENST00000462802.1,ENST00000465956.1,ENST00000440279.3,ENST00000374500.5,ENST00000494751.1,ENST00000488034.1	chr6	33384525:33384553:33384696:33384746:33384873:33384919,	33384697	33384746	33384696	33384696	Splice_Site	C	G	.
KIRP	TCGA-B3-4104-01	LHFPL4	ENST00000287585.6	chr3	9543480:9543995:9547650:9547887:9593957:9593991,	9547651	9547887	9547649	9547649	Splice_Site	G	A	.
KIRP	TCGA-IZ-8196-01	SKA3	ENST00000314759.5,ENST00000298260.4,ENST00000400018.3	chr13	21734040:21734126:21735928:21736014:21742126:21742538,	21735929	21736014	21735928	21735928	Splice_Site	C	T	.
KIRP	TCGA-IZ-8196-01	NAE1	ENST00000569388.1	chr16	66857183:66857209:66857431:66857503:66858757:66858788,66857183:66857209:66857431:66857503:66860425:66860486,	66857432	66857503	66857505	66857505	Splice_Site	T	C	.
KIRP	TCGA-IZ-8196-01	COL6A1	ENST00000361866.3,ENST00000498614.1,ENST00000463060.1	chr21	47421166:47421300:47421874:47421984:47422131:47422315,	47421875	47421984	47421874	47421874	Splice_Site	G	A	.
KIRP	TCGA-IZ-8196-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89407265:89407379:89408219:89408330:89410316:89410487,	89408220	89408330	89408218	89408218	Splice_Site	A	G	.
KIRP	TCGA-B9-4115-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35237699:35237823:35243287:35243361:35258989:35259047,	35243288	35243361	35243362	35243362	Splice_Site	G	C	.
KIRP	TCGA-B9-4113-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270212	66270212	Splice_Site	C	A	.
KIRP	TCGA-AL-3473-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247409	45247409	Splice_Site	C	T	.
KIRP	TCGA-GL-7773-01	C17orf53	ENST00000585683.1,ENST00000319977.4	chr17	42225494:42226395:42228328:42228412:42230004:42230135,	42228329	42228412	42228328	42228328	Splice_Site	G	C	.
KIRP	TCGA-BQ-5876-01	AEBP2	ENST00000541908.1,ENST00000512223.2,ENST00000266508.9,ENST00000360995.4,ENST00000398864.3,ENST00000398731.2	chr12	19653062:19653155:19665331:19665399:19667604:19667718,	19665332	19665399	19665400	19665400	Splice_Site	G	C	.
KIRP	TCGA-DW-7842-01	DENND1B	ENST00000294737.7,ENST00000367396.3	chr1	197643249:197643299:197684160:197684204:197741997:197742062,	197684161	197684204	197684159	197684159	Splice_Site	A	G	.
KIRP	TCGA-A4-7732-01	RPS6KC1	ENST00000366960.3	chr1	213224603:213224851:213244347:213244383:213251037:213251158,	213244348	213244383	213244385	213244385	Splice_Site	T	C	.
KIRP	TCGA-A4-7288-01	TBC1D22A	ENST00000407381.3,ENST00000441162.1,ENST00000406733.1,ENST00000394449.2,ENST00000337137.4,ENST00000355704.3	chr22	47432966:47433094:47507403:47507499:47569140:47569726,	47507404	47507499	47507402	47507402	Splice_Site	A	G	.
KIRP	TCGA-A4-A6HP-01	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113473617:113473721:113474213:113474264:113477658:113477723,	113474214	113474264	113474213	113474213	Splice_Site	G	A	p.K225_splice
KIRP	TCGA-AT-A5NU-01	CATSPERG	ENST00000412458.2,ENST00000410018.1,ENST00000409410.2,ENST00000489693.2,ENST00000409235.3,ENST00000471517.1,ENST00000312265.5	chr19	38849151:38849201:38850109:38850221:38851128:38851220,	38850110	38850221	38850108	38850108	Splice_Site	A	T	p.S499_splice
KIRP	TCGA-AT-A5NU-01	MFSD11	ENST00000588768.1,ENST00000588670.1	chr17	74738100:74738130:74738258:74738355:74739479:74739538,74738100:74738130:74738258:74738355:74740403:74740548,	74738259	74738355	74738356	74738356	Splice_Site	G	A	p.S146_splice
KIRP	TCGA-B1-A47N-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1281192:1281315:1281580:1281623:1281855:1281958,	1281581	1281623	1281625	1281625	Splice_Site	T	G	p.D5656_splice
KIRP	TCGA-B1-A656-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176305244:176305394:176305475:176305640:176306310:176306489,	176305476	176305640	176305475	176305475	Splice_Site	G	A	p.E674_splice
KIRP	TCGA-B1-A656-01	CNTNAP1	ENST00000264638.4,ENST00000591662.1	chr17	40849571:40849817:40849920:40849968:40850635:40851157,	40849921	40849968	40849969	40849969	Splice_Site	G	T	p.F1288_splice
KIRP	TCGA-B9-A5W7-01	RBM3	ENST00000489344.1,ENST00000376759.3,ENST00000430348.2,ENST00000376755.1,ENST00000466764.1,ENST00000354480.2	chrX	48434701:48434807:48434895:48434992:48435413:48435497,	48434896	48434992	48434994	48434994	Splice_Site	T	G	p.R138_splice
KIRP	TCGA-B9-A5W8-01	MICALL2	ENST00000405088.4,ENST00000413446.1,ENST00000467394.1,ENST00000472100.1,ENST00000297508.7,ENST00000471899.1,ENST00000479007.1	chr7	1477732:1477856:1477924:1477989:1478475:1478598,	1477925	1477989	1477990	1477990	Splice_Site	C	G	p.G708_splice
KIRP	TCGA-B9-A5W8-01	ACSF2	ENST00000510262.1	chr17	48541178:48541270:48541578:48541655:48541886:48541960,	48541579	48541655	48541577	48541577	Splice_Site	A	G	p.G405_splice
KIRP	TCGA-GL-A59T-01	RAPGEF1	ENST00000372189.3,ENST00000372195.1,ENST00000372190.3	chr9	134504488:134504641:134505622:134505711:134514021:134514173,	134505623	134505711	134505712	134505712	Splice_Site	C	T	p.E219_splice
KIRP	TCGA-GL-A59T-01	KIN	ENST00000535925.1,ENST00000543003.1,ENST00000460089.1,ENST00000379562.4	chr10	7808015:7808066:7811178:7811308:7816793:7816841,	7811179	7811308	7811178	7811178	Splice_Site	C	T	p.E266_splice
KIRP	TCGA-HE-A5NI-01	MSH3	ENST00000512258.1,ENST00000265081.6	chr5	80024669:80024784:80037282:80037367:80040324:80040434,	80037283	80037367	80037368	80037368	Splice_Site	G	C	p.Q551_splice
KIRP	TCGA-HE-A5NK-01	ASS1	ENST00000443588.1	chr9	133339497:133339554:133342111:133342186:133346220:133346291,133333904:133333976:133342111:133342186:133346220:133346248,	133342112	133342186	133342187	133342187	Splice_Site	G	C	p.K241_splice
KIRP	TCGA-IZ-A6M8-01	MEGF10	ENST00000508365.1,ENST00000418761.2,ENST00000274473.6,ENST00000503335.2	chr5	126676221:126676322:126705601:126705694:126732223:126732470,	126705602	126705694	126705695	126705695	Splice_Site	G	T	p.A138_splice
KIRP	TCGA-IZ-A6M9-01	CACNB1	ENST00000577582.1	chr17	37340577:37340636:37341036:37341117:37342748:37342825,	37341037	37341117	37341119	37341119	Splice_Site	T	A	p.T217_splice
KIRP	TCGA-KV-A6GD-01	PSG5	ENST00000599812.1,ENST00000407356.1,ENST00000366175.3,ENST00000342951.6	chr19	43674206:43674290:43679366:43679621:43680021:43680300,	43679367	43679621	43679366	43679366	Splice_Site	C	T	p.A322_splice
KIRP	TCGA-MH-A55Z-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5	chr11	65318872:65318945:65319018:65319035:65319442:65319628,	65319019	65319035	65319017	65319017	Splice_Site	A	T	p.S516_splice
KIRP	TCGA-P4-A5EA-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057329	30057329	Splice_Site	G	A	p.E270_splice
KIRP	TCGA-P4-A5EB-01	TRIM69	ENST00000561043.1	chr15	45028763:45028908:45048565:45048661:45051837:45051860,	45048566	45048661	45048565	45048565	Splice_Site	G	C	p.E162_splice
KIRP	TCGA-P4-A5EB-01	METTL5	ENST00000392640.2,ENST00000409965.1,ENST00000260953.5,ENST00000410097.1,ENST00000409837.1	chr2	170668979:170669016:170677601:170677783:170678452:170678567,170676070:170676153:170677601:170677783:170678452:170678567,	170677602	170677783	170677784	170677784	Splice_Site	C	A	p.G75_splice
KIRP	TCGA-PJ-A5Z8-01	PATE4	ENST00000457514.2	chr11	125703210:125703312:125707762:125707879:125708200:125709964,	125707763	125707879	125707761	125707761	Splice_Site	A	C	p.V20_splice
KIRP	TCGA-Q2-A5QZ-01	ESRP2	ENST00000251366.3,ENST00000562724.1,ENST00000569964.1,ENST00000564465.1,ENST00000564382.1,ENST00000473183.2,ENST00000565858.1	chr16	68267718:68267785:68267896:68268010:68269536:68269611,	68267897	68268010	68267896	68267896	Splice_Site	C	G	p.K147_splice
KIRP	TCGA-A4-7286-01	ATP10A	ENST00000356865.6	chr15	25953343:25953447:25958820:25959388:25961876:25962071,	25958821	25959388	25959389	25959389	Splice_Site	C	G	p.V593_splice
KIRP	TCGA-A4-7288-01	ENTPD6	ENST00000433417.1,ENST00000360031.2,ENST00000354989.5,ENST00000376666.3,ENST00000376652.4	chr20	25199185:25199250:25201867:25201969:25203473:25203519,	25201868	25201969	25201971	25201971	Splice_Site	T	A	p.A349_splice
KIRP	TCGA-A4-7583-01	RBM23	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	chr14	23374631:23374662:23374814:23374868:23375403:23375577,	23374815	23374868	23374814	23374814	Splice_Site	C	G	p.R152_splice
KIRP	TCGA-A4-7585-01	DARS	ENST00000537273.1	chr2	136718965:136719068:136736843:136736936:136740966:136741017,136718965:136719068:136736843:136736936:136742972:136743062,	136736844	136736936	136736937	136736937	Splice_Site	C	A	p.D42_splice
KIRP	TCGA-A4-7734-01	PPIB	ENST00000561048.1	chr15	64452311:64452396:64454239:64454353:64455050:64455205,	64454240	64454353	64454355	64454355	Splice_Site	T	C	p.V46_splice
KIRP	TCGA-A4-7915-01	SLC36A4	ENST00000524875.1,ENST00000529184.1,ENST00000326402.4	chr11	92916000:92916060:92917595:92917686:92918856:92918980,	92917596	92917686	92917687	92917687	Splice_Site	C	A	p.S60_splice
KIRP	TCGA-A4-8098-01	AP1G2	ENST00000465445.2,ENST00000397120.3,ENST00000308724.5,ENST00000535852.2,ENST00000460049.2	chr14	24032681:24032711:24032792:24032847:24032924:24032952,	24032793	24032847	24032848	24032848	Splice_Site	C	T	p.R411_splice
KIRP	TCGA-A4-8098-01	PITPNC1	ENST00000581322.1,ENST00000335257.6,ENST00000578527.1,ENST00000580974.1,ENST00000299954.9	chr17	65628258:65628354:65665623:65665779:65671594:65671658,	65665624	65665779	65665781	65665781	Splice_Site	T	C	p.K206_splice
KIRP	TCGA-A4-8311-01	PEX14	ENST00000356607.4,ENST00000491661.2,ENST00000538836.1	chr1	10659294:10659423:10678388:10678474:10683075:10683178,	10678389	10678474	10678475	10678475	Splice_Site	G	A	p.K128_splice
KIRP	TCGA-A4-8312-01	ATP10A	ENST00000356865.6,ENST00000555815.1	chr15	25971097:25971229:25972306:25972413:25981202:25981288,	25972307	25972413	25972305	25972305	Splice_Site	A	T	p.G283_splice
KIRP	TCGA-A4-8630-01	ZNF346	ENST00000503425.1	chr5	176468126:176468230:176471392:176471534:176477751:176477893,	176471393	176471534	176471535	176471535	Splice_Site	G	C	p.A198_splice
KIRP	TCGA-A4-8630-01	ZNF346	ENST00000511834.1	chr5	176468778:176468871:176471389:176471534:176477751:176477893,176468778:176468871:176471389:176471534:176477703:176477937,	176471390	176471534	176471535	176471535	Splice_Site	G	C	p.A198_splice
KIRP	TCGA-A4-8630-01	FRG1	ENST00000533157.1,ENST00000514482.1,ENST00000531991.2,ENST00000226798.4	chr4	190873316:190873442:190874222:190874280:190876191:190876305,	190874223	190874280	190874221	190874221	Splice_Site	A	G	p.V87_splice
KIRP	TCGA-AL-3466-01	M6PR	ENST00000000412.3,ENST00000543834.1	chr12	9096025:9096131:9096396:9096506:9098013:9098075,	9096397	9096506	9096395	9096395	Splice_Site	A	G	p.A151_splice
KIRP	TCGA-AL-3472-01	TSGA10	ENST00000488960.1,ENST00000539964.1,ENST00000393482.3,ENST00000409564.2,ENST00000393483.3,ENST00000355053.4,ENST00000410001.1	chr2	99688268:99688337:99689480:99689536:99695121:99695276,	99689481	99689536	99689479	99689479	Splice_Site	A	C	p.R313_splice
KIRP	TCGA-B1-5398-01	AGR2	ENST00000401412.1,ENST00000419304.2,ENST00000450569.1,ENST00000419572.2	chr7	16834561:16834643:16837254:16837318:16839367:16839441,	16837255	16837318	16837319	16837319	Splice_Site	C	A	p.Y111_splice
KIRP	TCGA-B1-5398-01	PPP2R5C	ENST00000557621.1,ENST00000445439.3,ENST00000553730.1,ENST00000334743.5,ENST00000557095.1,ENST00000350249.3	chr14	102252457:102252520:102323022:102323222:102348497:102348542,102276241:102276373:102323022:102323222:102348497:102348542,	102323023	102323222	102323022	102323022	Splice_Site	G	A	p.D32_splice
KIRP	TCGA-B1-5398-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20767937:20768078:20778605:20778762:20782499:20782697,	20778606	20778762	20778604	20778604	Splice_Site	A	G	p.I956_splice
KIRP	TCGA-B3-3926-01	MRC2	ENST00000446119.2	chr17	60765861:60766025:60766212:60766321:60767254:60767294,	60766213	60766321	60766323	60766323	Splice_Site	T	C	p.D1112_splice
KIRP	TCGA-B3-4104-01	DMXL2	ENST00000560421.1,ENST00000543779.2,ENST00000449909.3,ENST00000251076.5	chr15	51856321:51856457:51857284:51857363:51860683:51860755,	51857285	51857363	51857284	51857284	Splice_Site	C	A	p.D122_splice
KIRP	TCGA-B3-4104-01	LHFPL4	ENST00000287585.6	chr3	9543480:9543995:9547650:9547887:9593957:9593991,	9547651	9547887	9547649	9547649	Splice_Site	G	A	p.D215_splice
KIRP	TCGA-B9-4113-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270212	66270212	Splice_Site	C	A	p.A78_splice
KIRP	TCGA-B9-4113-01	PRKRIP1	ENST00000482549.1,ENST00000397912.3,ENST00000477886.1,ENST00000482465.1,ENST00000496391.1,ENST00000354783.4,ENST00000469763.1	chr7	102016665:102016769:102039994:102040095:102045044:102045072,102038066:102038145:102039994:102040095:102045044:102045072,	102039995	102040095	102040096	102040096	Splice_Site	G	A	p.K102_splice
KIRP	TCGA-B9-4115-01	SEC24A	ENST00000398844.2,ENST00000322887.4	chr5	133996808:133997276:134002512:134002686:134007498:134007576,	134002513	134002686	134002687	134002687	Splice_Site	G	A	p.G247_splice
KIRP	TCGA-B9-4116-01	IGSF9B	ENST00000321016.8,ENST00000527648.2,ENST00000533871.2	chr11	133801965:133802108:133805511:133805657:133805947:133806089,	133805512	133805657	133805658	133805658	Splice_Site	C	T	p.N274_splice
KIRP	TCGA-BQ-5876-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	185976259:185976414:185984290:185984569:185985089:185985371,	185984291	185984569	185984290	185984290	Splice_Site	G	A	p.I1544_splice
KIRP	TCGA-BQ-5883-01	DCPS	ENST00000263579.4	chr11	126176464:126176639:126201299:126201445:126208180:126208294,	126201300	126201445	126201299	126201299	Splice_Site	G	T	p.D126_splice
KIRP	TCGA-BQ-5885-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17401959	17401959	Splice_Site	G	T	p.G166_splice
KIRP	TCGA-BQ-5885-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92118685:92118737:92119027:92119225:92120585:92120816,	92119028	92119225	92119227	92119227	Splice_Site	T	C	p.S1147_splice
KIRP	TCGA-BQ-5885-01	PEX1	ENST00000496420.1	chr7	92118685:92118737:92119032:92119225:92120585:92120816,	92119033	92119225	92119227	92119227	Splice_Site	T	C	p.S1147_splice
KIRP	TCGA-BQ-5886-01	DAPP1	ENST00000512369.1	chr4	100784926:100785012:100787190:100787278:100789273:100789871,	100787191	100787278	100787280	100787280	Splice_Site	T	G	p.L258_splice
KIRP	TCGA-BQ-5886-01	EMID1	ENST00000404820.3,ENST00000430127.1,ENST00000484039.1,ENST00000334018.6,ENST00000404755.3	chr22	29622478:29622540:29627008:29627129:29627581:29627604,	29627009	29627129	29627008	29627008	Splice_Site	G	T	p.M156_splice
KIRP	TCGA-BQ-5888-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000552542.1,ENST00000548465.1,ENST00000552642.1,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000552897.1,ENST00000550785.1	chr12	113698172:113698297:113703984:113704161:113705647:113705684,	113703985	113704161	113704162	113704162	Splice_Site	G	T	p.Y210_splice
KIRP	TCGA-BQ-5890-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143047	47143047	Splice_Site	T	C	p.W1707_splice
KIRP	TCGA-BQ-7044-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000368993.2	chr1	150686560:150686597:150689613:150689758:150691948:150692014,150687090:150687154:150689613:150689758:150691948:150692014,	150689614	150689758	150689613	150689613	Splice_Site	C	T	p.D60_splice
KIRP	TCGA-BQ-7044-01	HORMAD1	ENST00000476530.1	chr1	150687090:150687154:150689613:150689783:150691948:150692014,	150689614	150689783	150689613	150689613	Splice_Site	C	T	p.D60_splice
KIRP	TCGA-BQ-7044-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28000020:28000618:28090104:28090198:28096527:28096621,	28090105	28090198	28090200	28090200	Splice_Site	T	A	p.G780_splice
KIRP	TCGA-BQ-7048-01	ACSL1	ENST00000281455.2,ENST00000504900.1,ENST00000507295.1	chr4	185709770:185709885:185724473:185724700:185747069:185747188,	185724474	185724700	185724472	185724472	Splice_Site	A	T	p.A65_splice
KIRP	TCGA-BQ-7061-01	LSR	ENST00000360798.3	chr19	35753448:35753595:35757261:35757435:35757581:35757641,35749847:35749967:35757261:35757435:35757581:35757641,	35757262	35757435	35757260	35757260	Splice_Site	A	G	p.L308_splice
KIRP	TCGA-BQ-7061-01	KIF4A	ENST00000374403.3	chrX	69626742:69626925:69637737:69637854:69639510:69639633,	69637738	69637854	69637856	69637856	Splice_Site	T	C	p.K1124_splice
KIRP	TCGA-DW-7840-01	SENP3	ENST00000580042.1,ENST00000578868.1	chr17	7469033:7469081:7470243:7470322:7473673:7473811,	7470244	7470322	7470323	7470323	Splice_Site	G	A	p.N447_splice
KIRP	TCGA-DZ-6132-01	TTYH1	ENST00000376531.3,ENST00000301194.4,ENST00000376530.3,ENST00000391739.3,ENST00000476757.1,ENST00000487134.1,ENST00000472198.1	chr19	54933372:54933584:54937849:54937945:54940484:54940531,	54937850	54937945	54937848	54937848	Splice_Site	A	G	p.R213_splice
KIRP	TCGA-DZ-6132-01	GPR180	ENST00000376958.4	chr13	95264443:95264644:95271403:95271584:95271721:95271771,	95271404	95271584	95271585	95271585	Splice_Site	G	A	p.S229_splice
KIRP	TCGA-DZ-6133-01	PEX5	ENST00000266563.5	chr12	7341280:7341406:7342957:7343120:7343483:7343519,7342302:7342346:7342957:7343120:7343483:7343519,	7342958	7343120	7343122	7343122	Splice_Site	T	C	p.A49_splice
KIRP	TCGA-EV-5901-01	SLC22A5	ENST00000475308.1,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1,ENST00000447841.1	chr5	131728124:131728307:131729367:131729503:131729876:131729964,	131729368	131729503	131729504	131729504	Splice_Site	G	A	p.G553_splice
KIRP	TCGA-EV-5901-01	FBRS	ENST00000356166.6,ENST00000287468.5,ENST00000395073.2	chr16	30676626:30676722:30676958:30677027:30677832:30677862,	30676959	30677027	30676958	30676958	Splice_Site	G	C	p.S49_splice
KIRP	TCGA-EV-5902-01	GSN	ENST00000432226.1,ENST00000373808.2,ENST00000436847.1,ENST00000341272.2,ENST00000545652.1,ENST00000412819.1,ENST00000394353.2,ENST00000373818.4,ENST00000373823.3,ENST00000449733.1	chr9	124073063:124073123:124074616:124074766:124076211:124076301,	124074617	124074766	124074615	124074615	Splice_Site	A	T	p.N223_splice
KIRP	TCGA-G7-6797-01	N4BP2L2	ENST00000446957.2,ENST00000505213.1,ENST00000267068.3,ENST00000357505.6,ENST00000504114.1,ENST00000399396.3	chr13	33092011:33092140:33095509:33095586:33096318:33096407,	33095510	33095586	33095588	33095588	Splice_Site	T	C	p.A63_splice
KIRP	TCGA-HE-7130-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44833910:44833960:44870205:44870264:44879854:44879975,	44870206	44870264	44870205	44870205	Splice_Site	G	C	p.N129_splice
KIRP	TCGA-J7-6720-01	CYP11B1	ENST00000377675.3,ENST00000292427.4	chr8	143956372:143956570:143956649:143956728:143957127:143957213,	143956650	143956728	143956729	143956729	Splice_Site	C	G	p.R445_splice
KIRP	TCGA-J7-6720-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47542409:47542445:47542788:47542851:47544564:47544627,	47542789	47542851	47542788	47542788	Splice_Site	G	A	p.G537_splice
KIRP	TCGA-J7-8537-01	EIF4A1	ENST00000582169.1,ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000578476.1,ENST00000582746.1,ENST00000581384.1,ENST00000580888.1,ENST00000577269.1,ENST00000584901.1,ENST00000585024.1,ENST00000583802.1	chr17	7477863:7477996:7478436:7478576:7479841:7479893,	7478437	7478576	7478578	7478578	Splice_Site	T	G	p.Q115_splice
KIRP	TCGA-A4-A57E-01	GALC	ENST00000474294.2,ENST00000261304.2,ENST00000554372.1,ENST00000557316.1	chr14	88454487:88454551:88454798:88454867:88459313:88459466,	88454799	88454867	88454869	88454870	Splice_Site	-	A	p.A66_splice
KIRP	TCGA-B1-A657-01	IL1R2	ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102636121:102636274:102638648:102638711:102640994:102641130,	102638649	102638711	102638648	102638649	Splice_Site	-	A	p.K230_splice
KIRP	TCGA-B9-A44B-01	RPSA	ENST00000301821.6,ENST00000478027.1,ENST00000443003.1	chr3	39453139:39453268:39453386:39453552:39453764:39453925,	39453387	39453552	39453553	39453556	Splice_Site	GTAT	-	p.E270_splice
KIRP	TCGA-B9-A5W8-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560042	19560043	Splice_Site	-	T	p.K631_splice
KIRP	TCGA-B9-A69E-01	LSM1	ENST00000520286.1,ENST00000311351.4,ENST00000522515.1	chr8	38021127:38021358:38027319:38027435:38029482:38029546,	38027320	38027435	38027436	38027436	Splice_Site	C	-	p.A39_splice
KIRP	TCGA-MH-A55W-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709581	176709584	Splice_Site	AAGT	-	p.K2003_splice
KIRP	TCGA-P4-A5EA-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365077	37365078	Splice_Site	AG	-	p.R568_splice
KIRP	TCGA-PJ-A5Z8-01	VPS8	ENST00000421069.1,ENST00000436792.2,ENST00000492449.1,ENST00000287546.4,ENST00000437079.3	chr3	184603897:184603944:184612490:184612713:184616352:184616442,	184612491	184612713	184612489	184612503	Splice_Site	AGGGATCTTTTATTT	-	p.K594_splice
KIRP	TCGA-A4-8515-01	RAD18	ENST00000264926.2	chr3	8953995:8954056:8955327:8955404:8977554:8977739,	8955328	8955404	8955405	8955406	Splice_Site	-	TG	p.A297_splice
KIRP	TCGA-A4-8630-01	SUPT16H	ENST00000216297.2,ENST00000557394.1	chr14	21819637:21820977:21821646:21821724:21821861:21821991,	21821647	21821724	21821646	21821648	Splice_Site	CCT	-	p.A1000_splice
KIRP	TCGA-B9-4116-01	MAT2A	ENST00000481412.1,ENST00000409017.1,ENST00000306434.3	chr2	85768755:85768868:85768951:85769095:85769277:85769496,	85768952	85769095	85769094	85769097	Splice_Site	AAGT	-	p.Q183_splice
KIRP	TCGA-B9-7268-01	C1orf54	ENST00000369099.3,ENST00000369102.1,ENST00000369098.3	chr1	150246489:150246573:150248149:150248208:150248929:150249040,	150248150	150248208	150248209	150248212	Splice_Site	GTGA	-	p.L63_splice
KIRP	TCGA-BQ-5878-01	ZNF318	ENST00000318149.3,ENST00000605935.1,ENST00000361428.2	chr6	43316061:43316363:43320114:43320214:43322401:43323883,	43320115	43320214	43320114	43320114	Splice_Site	C	-	p.G924_splice
KIRP	TCGA-BQ-7048-01	UBR2	ENST00000372883.3,ENST00000372899.1,ENST00000372901.1	chr6	42610153:42610219:42611951:42612074:42612210:42612274,	42611952	42612074	42611951	42611951	Splice_Site	G	-	p.T700_splice
KIRP	TCGA-BQ-7048-01	ENTPD5	ENST00000557325.1,ENST00000553284.1,ENST00000334696.6	chr14	74443035:74443115:74443726:74443762:74444001:74444077,	74443727	74443762	74443764	74443765	Splice_Site	-	A	p.G173_splice
KIRP	TCGA-DW-7838-01	MMRN2	ENST00000474994.2,ENST00000610081.1,ENST00000372027.5,ENST00000609457.1	chr10	88704120:88704192:88704944:88705025:88705126:88705233,	88704945	88705025	88705024	88705026	Splice_Site	ATC	-	p.D134_splice
KIRP	TCGA-DZ-6132-01	BAIAP2	ENST00000392411.3,ENST00000572498.1,ENST00000321300.6,ENST00000428708.2	chr17	79080544:79080707:79082274:79082309:79089569:79089617,	79082275	79082309	79082274	79082274	Splice_Site	G	-	p.G501_splice
KIRP	TCGA-G7-6796-01	SP100	ENST00000264052.5,ENST00000340126.4,ENST00000409112.1	chr2	231334729:231334813:231338038:231338155:231339108:231339162,	231338039	231338155	231338157	231338157	Splice_Site	T	-	p.D516_splice
KIRP	TCGA-G7-6796-01	SP100	ENST00000452345.1	chr2	231334729:231334813:231338098:231338155:231339108:231339162,	231338099	231338155	231338157	231338157	Splice_Site	T	-	p.D516_splice
KIRP	TCGA-G7-6797-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145113398:145113594:145113675:145113799:145113882:145113982,	145113676	145113799	145113801	145113801	Splice_Site	T	-	p.G155_splice
KIRP	TCGA-IZ-8195-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97808376:97808405:97808499:97808572:97810254:97810283,	97808500	97808572	97808574	97808575	Splice_Site	-	A	p.V301_splice
LGG	TCGA-HT-8105-01	DDX51	ENST00000329073.4,ENST00000397333.3	chr12	132625819:132625965:132626042:132626151:132626394:132626501,	132626043	132626151	132626153	132626153	Splice_Site	T	C	.
LGG	TCGA-DU-5853-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76829714:76829823:76845303:76845410:76849165:76849319,	76845304	76845410	76845411	76845411	Splice_Site	C	T	.
LGG	TCGA-E1-5307-01	TCF12	ENST00000560764.1,ENST00000537840.1,ENST00000267811.5,ENST00000557843.1,ENST00000343827.3	chr15	57535669:57535748:57543547:57543621:57545459:57545666,	57543548	57543621	57543547	57543547	Splice_Site	G	A	.
LGG	TCGA-HW-8320-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257818	6257818	Splice_Site	T	A	.
LGG	TCGA-HT-8109-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
LGG	TCGA-P5-A5EU-01	OTOS	ENST00000391989.2,ENST00000319460.1	chr2	241078445:241078771:241079478:241079505:241079685:241079779,	241079479	241079505	241079506	241079506	Splice_Site	C	T	.
LGG	TCGA-DU-7304-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	-	.
LGG	TCGA-E1-5304-01	ALKBH6	ENST00000490483.1	chr19	36501468:36501585:36501795:36501967:36502305:36502366,	36501796	36501967	36501795	36501795	Splice_Site	C	T	.
LGG	TCGA-E1-5304-01	ALKBH6	ENST00000252984.7,ENST00000378875.3	chr19	36501468:36501585:36501795:36501947:36502305:36502366,	36501796	36501947	36501795	36501795	Splice_Site	C	T	.
LGG	TCGA-E1-5304-01	ALKBH6	ENST00000490986.1	chr19	36501468:36501585:36501795:36501979:36502305:36502366,	36501796	36501979	36501795	36501795	Splice_Site	C	T	.
LGG	TCGA-DB-A4XH-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101585892:101586188:101589246:101589303:101596338:101596388,	101589247	101589303	101589305	101589308	Splice_Site	TAGA	-	.
LGG	TCGA-FG-6689-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245986	26245986	Splice_Site	A	T	.
LGG	TCGA-DU-A5TW-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574034	7574034	Splice_Site	C	G	.
LGG	TCGA-CS-4941-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53675196:53675387:53679536:53679915:53682875:53683027,	53679537	53679915	53679916	53679916	Splice_Site	C	T	.
LGG	TCGA-DU-6408-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115400064:115400118:115401167:115401332:115402363:115402431,	115401168	115401332	115401333	115401333	Splice_Site	G	A	.
LGG	TCGA-HT-7480-01	CIC	ENST00000572681.2,ENST00000160740.3	chr19	42796237:42796359:42796451:42796618:42796717:42796749,42796237:42796359:42796451:42796618:42796720:42797011,	42796452	42796618	42796451	42796451	Splice_Site	G	T	.
LGG	TCGA-HT-7480-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
LGG	TCGA-CS-6188-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120497662:120497855:120502014:120502125:120506196:120506430,	120502015	120502125	120502127	120502127	Splice_Site	T	C	.
LGG	TCGA-HT-A61C-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596669	136596669	Splice_Site	C	T	.
LGG	TCGA-DH-5144-01	CFL1	ENST00000532134.1,ENST00000525451.2,ENST00000527344.1,ENST00000531407.1,ENST00000534769.1,ENST00000530413.1,ENST00000531413.1,ENST00000308162.5,ENST00000524553.1	chr11	65622888:65622919:65623124:65623201:65623405:65623425,	65623125	65623201	65623202	65623202	Splice_Site	C	T	.
LGG	TCGA-HT-7609-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	T	.
LGG	TCGA-DU-6397-01	NF1	ENST00000358273.4,ENST00000479536.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29661855:29662049:29663350:29663491:29663652:29663891,	29663351	29663491	29663350	29663350	Splice_Site	G	C	.
LGG	TCGA-FG-A60J-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577157	7577157	Splice_Site	T	G	.
LGG	TCGA-DB-A4XF-01	ANKLE2	ENST00000538591.1,ENST00000337516.5,ENST00000535036.1,ENST00000539605.1,ENST00000357997.5,ENST00000439231.2	chr12	133311992:133312098:133313478:133313651:133318004:133318071,	133313479	133313651	133313477	133313477	Splice_Site	A	C	.
LGG	TCGA-DU-7007-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	G	.
LGG	TCGA-FG-8188-01	SF3A3	ENST00000448721.2,ENST00000373019.4	chr1	38433715:38433806:38435025:38435136:38435242:38435407,	38435026	38435136	38435137	38435137	Splice_Site	C	A	.
LGG	TCGA-DH-5140-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574035	7574035	Splice_Site	T	G	.
LGG	TCGA-DU-6405-01	DOCK5	ENST00000467709.2,ENST00000276440.7,ENST00000481728.2,ENST00000444569.1	chr8	25209246:25209342:25216478:25216577:25220562:25220657,	25216479	25216577	25216578	25216578	Splice_Site	G	A	.
LGG	TCGA-HT-8114-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578291	7578291	Splice_Site	T	C	.
LGG	TCGA-HT-7606-01	DDR1	ENST00000508472.1,ENST00000376568.3,ENST00000376569.3,ENST00000376567.2,ENST00000454612.2,ENST00000507533.1,ENST00000418800.2,ENST00000376575.3,ENST00000515219.1,ENST00000428153.2,ENST00000508312.1,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8,ENST00000376570.4,ENST00000460944.2	chr6	30858749:30858897:30859156:30859256:30859778:30859795,	30859157	30859256	30859258	30859258	Splice_Site	T	C	.
LGG	TCGA-HT-7605-01	NCKAP5	ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133636420:133636489:133721292:133721442:133751724:133751812,	133721293	133721442	133721292	133721292	Splice_Site	C	T	.
LGG	TCGA-DU-6394-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000346562.2,ENST00000357798.5,ENST00000548645.1	chr14	34247671:34247778:34263102:34263250:34266662:34266778,	34263103	34263250	34263252	34263252	Splice_Site	T	G	.
LGG	TCGA-FG-8182-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	T	.
LGG	TCGA-DU-7294-01	SKA3	ENST00000314759.5,ENST00000465471.1,ENST00000298260.4,ENST00000400018.3	chr13	21735928:21736014:21742126:21742538:21746477:21746643,	21742127	21742538	21742125	21742125	Splice_Site	A	C	.
LGG	TCGA-HT-7608-01	TOP3B	ENST00000444502.1,ENST00000457179.1,ENST00000357179.5,ENST00000398793.2	chr22	22321974:22322088:22322990:22323147:22324581:22324778,	22322991	22323147	22322990	22322990	Splice_Site	C	A	.
LGG	TCGA-E1-5303-01	ZMAT3	ENST00000311417.2,ENST00000414084.1,ENST00000432729.1	chr3	178745544:178745600:178748667:178748787:178785270:178785597,	178748668	178748787	178748788	178748788	Splice_Site	C	G	.
LGG	TCGA-CS-5390-01	TAF9B	ENST00000480681.1	chrX	77393458:77393595:77394339:77394421:77395057:77395119,	77394340	77394421	77394339	77394339	Splice_Site	C	T	.
LGG	TCGA-DU-5871-01	VCP	ENST00000493886.1,ENST00000358901.6	chr9	35057372:35057527:35059060:35059216:35059489:35059589,	35059061	35059216	35059217	35059217	Splice_Site	C	A	.
LGG	TCGA-HT-A615-01	POSTN	ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4	chr13	38166236:38166301:38171320:38171419:38172744:38172863,	38171321	38171419	38171320	38171320	Splice_Site	C	T	.
LGG	TCGA-HT-A615-01	ZC4H2	ENST00000337990.2,ENST00000374839.3,ENST00000476032.1,ENST00000545618.1,ENST00000488831.1	chrX	64137737:64137776:64138921:64139084:64139960:64140007,	64138922	64139084	64139085	64139085	Splice_Site	C	A	.
LGG	TCGA-DU-8166-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76940087	76940087	Splice_Site	T	C	.
LGG	TCGA-DU-5849-01	TPM1	ENST00000317516.7,ENST00000334895.5	chr15	63354413:63354476:63354774:63354844:63363288:63363421,63354413:63354476:63354774:63354844:63362068:63362142,	63354775	63354844	63354774	63354774	Splice_Site	G	A	.
LGG	TCGA-HT-7616-01	COG5	ENST00000393603.2,ENST00000464542.1,ENST00000347053.3,ENST00000297135.3	chr7	106850970:106851050:106851543:106851670:106871059:106871136,	106851544	106851670	106851543	106851543	Splice_Site	C	T	.
LGG	TCGA-P5-A5EV-01	AIPL1	ENST00000574506.1,ENST00000570466.1,ENST00000575265.1,ENST00000381128.2,ENST00000381129.3,ENST00000576776.1	chr17	6330200:6330377:6331637:6331826:6337238:6337352,	6331638	6331826	6331637	6331637	Splice_Site	C	T	.
LGG	TCGA-HT-7620-01	USP30	ENST00000392784.2,ENST00000377883.3,ENST00000257548.5	chr12	109519138:109519198:109519737:109519824:109520467:109520548,	109519738	109519824	109519737	109519737	Splice_Site	G	A	.
LGG	TCGA-FG-6688-01	TYRO3	ENST00000568343.1	chr15	41864640:41864762:41865214:41865309:41865505:41865575,	41865215	41865309	41865311	41865311	Splice_Site	T	C	.
LGG	TCGA-FG-6688-01	TYRO3	ENST00000560162.1,ENST00000263798.3,ENST00000559851.1,ENST00000559066.1	chr15	41864640:41864762:41865199:41865309:41865505:41865575,	41865200	41865309	41865311	41865311	Splice_Site	T	C	.
LGG	TCGA-DU-5847-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953728	48953728	Splice_Site	A	G	.
LGG	TCGA-DU-5847-01	NF1	ENST00000487476.1,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29490203:29490394:29496908:29497015:29508439:29508507,	29496909	29497015	29497016	29497016	Splice_Site	G	A	.
LGG	TCGA-DU-5847-01	CCDC159	ENST00000458408.1,ENST00000588790.1,ENST00000590054.1	chr19	11461560:11461679:11462581:11462649:11462732:11462794,	11462582	11462649	11462650	11462650	Splice_Site	G	A	.
LGG	TCGA-HW-A5KJ-01	MAVS	ENST00000416600.2	chr20	3838281:3838456:3841978:3842151:3842900:3843060,3835271:3835388:3841978:3842151:3842900:3843060,	3841979	3842151	3841977	3841977	Splice_Site	A	G	.
LGG	TCGA-HT-7677-01	EYA4	ENST00000531861.1,ENST00000367895.5,ENST00000355286.6,ENST00000531901.1,ENST00000525849.1,ENST00000430974.2,ENST00000452339.2,ENST00000355167.3,ENST00000431403.2	chr6	133782251:133782318:133783472:133783615:133783758:133783872,	133783473	133783615	133783471	133783471	Splice_Site	A	T	.
LGG	TCGA-E1-5305-01	LBP	ENST00000217407.2	chr20	36982683:36982839:36983745:36983809:36989357:36989421,	36983746	36983809	36983811	36983811	Splice_Site	T	A	.
LGG	TCGA-DB-A4XB-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76854879:76855049:76855200:76855289:76855902:76856033,	76855201	76855289	76855199	76855199	Splice_Site	A	G	.
LGG	TCGA-EZ-7264-01	DPY19L2	ENST00000324472.4,ENST00000541083.1,ENST00000439061.2,ENST00000306389.7	chr12	63991673:63991690:63994085:63994166:64002395:64002454,	63994086	63994166	63994085	63994085	Splice_Site	C	T	.
LGG	TCGA-DB-A4XE-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579592	7579592	Splice_Site	T	-	.
LGG	TCGA-DU-7013-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476671	32476671	Splice_Site	C	T	.
LGG	TCGA-FG-5963-01	TXNDC16	ENST00000281741.4	chr14	52907281:52907442:52922041:52922180:52923807:52923892,	52922042	52922180	52922041	52922041	Splice_Site	C	T	.
LGG	TCGA-CS-4938-01	ANXA9	ENST00000368947.4	chr1	150954962:150955059:150955565:150955656:150955813:150955910,	150955566	150955656	150955565	150955565	Splice_Site	G	A	.
LGG	TCGA-FG-7636-01	GUF1	ENST00000506793.1,ENST00000281543.5	chr4	44692733:44692877:44693682:44693816:44696428:44696530,	44693683	44693816	44693681	44693681	Splice_Site	A	G	.
LGG	TCGA-HT-7693-01	FYCO1	ENST00000296137.2,ENST00000535325.1	chr3	46021196:46021322:46023061:46023168:46026347:46026487,	46023062	46023168	46023170	46023170	Splice_Site	T	C	.
LGG	TCGA-CS-4942-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
LGG	TCGA-DU-5874-01	OSR2	ENST00000435298.2	chr8	99961066:99961836:99962883:99962983:99963828:99964328,	99962884	99962983	99962883	99962883	Splice_Site	G	A	.
LGG	TCGA-DU-5874-01	PTGES2	ENST00000474124.1,ENST00000487063.1,ENST00000449878.1,ENST00000277462.5,ENST00000338961.6	chr9	130884744:130884758:130885212:130885413:130885980:130886034,	130885213	130885413	130885212	130885212	Splice_Site	C	T	.
LGG	TCGA-HT-A5RA-01	GART	ENST00000441403.1	chr21	34907530:34907626:34911476:34911629:34914853:34915126,34907530:34907626:34911476:34911629:34914370:34914385,	34911477	34911629	34911630	34911630	Splice_Site	C	T	.
LGG	TCGA-HT-7874-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865875	41865875	Splice_Site	A	T	.
LGG	TCGA-HT-8564-01	AKAP9	ENST00000358100.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91736606:91736736:91737807:91737947:91739435:91739781,	91737808	91737947	91737807	91737807	Splice_Site	G	T	.
LGG	TCGA-S9-A7J1-01	SLC26A10	ENST00000490243.1,ENST00000474791.1,ENST00000440686.1,ENST00000320442.4,ENST00000474359.2,ENST00000379218.2,ENST00000487816.1	chr12	58018678:58018765:58018905:58018939:58019018:58019101,	58018906	58018939	58018904	58018906	Splice_Site	AGG	-	p.K448_splice
LGG	TCGA-TQ-A7RV-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167482	24167485	Splice_Site	AAGT	-	p.76_splice
LGG	TCGA-DU-7302-01	CIT	ENST00000537607.1,ENST00000392520.2,ENST00000392521.2,ENST00000261833.7,ENST00000545913.1	chr12	120151007:120151099:120151272:120151453:120152001:120152139,	120151273	120151453	120151451	120151455	Splice_Site	ATTCT	-	p.D1436_splice
LGG	TCGA-QH-A6XC-01	STXBP4	ENST00000376352.2	chr17	53124449:53124515:53150260:53150437:53155438:53155555,	53150261	53150437	53150436	53150439	Splice_Site	AAGT	-	p.396_splice
LGG	TCGA-DB-5275-01	ZNF277	ENST00000457808.1	chr7	111926931:111927129:111936283:111936366:111958236:111958328,	111936284	111936366	111936282	111936284	Splice_Site	AGA	-	p.128_splice
LGG	TCGA-DU-A7TB-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591247	67591249	Splice_Site	GGT	-	p.R582_splice
LGG	TCGA-DU-6392-01	AP1G1	ENST00000423132.2	chr16	71799391:71799487:71803430:71803439:71803525:71803602,	71803431	71803439	71803439	71803440	Splice_Site	-	A	p.K215_splice
LIHC	TCGA-DD-A4NK-01	CDC45	ENST00000404724.3,ENST00000263201.1,ENST00000407835.1	chr22	19471384:19471528:19481849:19481905:19483503:19483509,	19481850	19481905	19481906	19481906	Splice_Site	G	T	.
LIHC	TCGA-RG-A7D4-01	FRAS1	ENST00000264895.6,ENST00000325942.6,ENST00000264899.6	chr4	78987138:78987170:79158663:79158771:79166386:79166479,	79158664	79158771	79158773	79158773	Splice_Site	T	C	.
LIHC	TCGA-RG-A7D4-01	COL5A1	ENST00000371817.3	chr9	137711961:137712069:137713942:137713996:137714843:137714879,	137713943	137713996	137713941	137713941	Splice_Site	A	T	.
LIHC	TCGA-DD-AAVP-01	SIKE1	ENST00000060969.5,ENST00000510745.1,ENST00000369528.5	chr1	115316965:115316993:115318966:115319080:115321762:115321905,	115318967	115319080	115318966	115318966	Splice_Site	C	G	.
LIHC	TCGA-DD-AAD3-01	MAOB	ENST00000536181.1,ENST00000538942.1,ENST00000378069.4,ENST00000487544.1	chrX	43662546:43662651:43698113:43698251:43702915:43703010,	43698114	43698251	43698252	43698252	Splice_Site	C	A	.
LIHC	TCGA-2Y-A9HB-01	TNFRSF10B	ENST00000542226.1,ENST00000347739.3,ENST00000523504.1,ENST00000276431.4	chr8	22884645:22884801:22885234:22885266:22885843:22885954,	22885235	22885266	22885267	22885267	Splice_Site	C	T	.
LIHC	TCGA-4R-AA8I-01	PXDN	ENST00000467191.1,ENST00000433670.1,ENST00000252804.4	chr2	1668762:1668846:1669985:1670258:1677414:1677584,	1669986	1670258	1670259	1670259	Splice_Site	C	T	.
LIHC	TCGA-4R-AA8I-01	DUOXA1	ENST00000559013.1,ENST00000560572.1,ENST00000267803.4,ENST00000559988.1,ENST00000559014.1	chr15	45412993:45413003:45413284:45413419:45414382:45414438,	45413285	45413419	45413420	45413420	Splice_Site	C	T	.
LIHC	TCGA-4R-AA8I-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000565918.1,ENST00000443099.2	chr18	66368981:66369027:66377257:66377381:66378600:66378640,	66377258	66377381	66377257	66377257	Splice_Site	C	G	.
LIHC	TCGA-4R-AA8I-01	DHRS4L2	ENST00000560276.1,ENST00000559387.1,ENST00000559411.1,ENST00000335125.6,ENST00000382755.4	chr14	24464305:24464342:24470071:24470142:24470241:24470286,	24470072	24470142	24470144	24470144	Splice_Site	T	-	.
LIHC	TCGA-4R-AA8I-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24951176:24951345:24952369:24952684:24962300:24962402,	24952370	24952684	24952369	24952369	Splice_Site	G	-	.
LIHC	TCGA-DD-AAEI-01	ARHGAP25	ENST00000497079.1,ENST00000473986.1,ENST00000409202.3,ENST00000409220.1,ENST00000463483.1,ENST00000544262.1,ENST00000485700.1	chr2	69009364:69009452:69014971:69015088:69034407:69034612,69009364:69009452:69014971:69015088:69034404:69034612,	69014972	69015088	69014971	69014971	Splice_Site	G	A	.
LIHC	TCGA-UB-A7MC-01	SLA2	ENST00000360672.2	chr20	35262892:35262992:35269647:35269781:35274239:35274284,	35269648	35269781	35269783	35269783	Splice_Site	T	A	.
LIHC	TCGA-DD-AAE9-01	PCSK9	ENST00000543384.1,ENST00000302118.5	chr1	55525158:55525336:55527047:55527229:55529041:55529112,	55527048	55527229	55527047	55527047	Splice_Site	G	T	.
LIHC	TCGA-2Y-A9H0-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1428895:1428994:1429965:1429995:1430220:1430361,	1429966	1429995	1429964	1429964	Splice_Site	A	C	.
LIHC	TCGA-G3-A5SK-01	IKBIP	ENST00000299157.4	chr12	99007182:99008118:99028073:99028191:99038300:99038732,99018026:99020544:99028073:99028191:99038300:99038732,	99028074	99028191	99028193	99028193	Splice_Site	T	A	.
LIHC	TCGA-G3-A7M6-01	PDK3	ENST00000441463.2	chrX	24483572:24483678:24512858:24513000:24516945:24517017,	24512859	24513000	24513001	24513001	Splice_Site	G	C	.
LIHC	TCGA-CC-A9FU-01	AXIN1	ENST00000354866.3,ENST00000481769.1,ENST00000461023.1,ENST00000262320.3	chr16	354303:354441:359972:360069:364542:364683,	359973	360069	360070	360070	Splice_Site	C	A	.
LIHC	TCGA-CC-A9FU-01	BRSK1	ENST00000309383.1,ENST00000590333.1,ENST00000326848.7	chr19	55815034:55815194:55815417:55815478:55815918:55816035,	55815418	55815478	55815479	55815480	Splice_Site	-	TAA	.
LIHC	TCGA-EP-A2KA-01	TCEA3	ENST00000450454.2	chr1	23707935:23707967:23710838:23710910:23713765:23713912,	23710839	23710910	23710837	23710837	Splice_Site	A	G	.
LIHC	TCGA-EP-A2KA-01	WDR35	ENST00000281405.4,ENST00000345530.3	chr2	20132143:20132208:20133161:20133272:20135231:20135364,	20133162	20133272	20133274	20133274	Splice_Site	T	C	.
LIHC	TCGA-EP-A2KA-01	IFT172	ENST00000507184.1,ENST00000260570.3	chr2	27677433:27677527:27679377:27679520:27680505:27680622,	27679378	27679520	27679376	27679376	Splice_Site	A	G	.
LIHC	TCGA-EP-A2KA-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000509236.1,ENST00000506128.1,ENST00000511320.1	chr5	176396283:176396292:176396601:176396707:176397742:176397867,	176396602	176396707	176396709	176396709	Splice_Site	T	C	.
LIHC	TCGA-EP-A2KA-01	UIMC1	ENST00000512031.1	chr5	176395555:176396292:176396597:176396707:176397742:176397867,	176396598	176396707	176396709	176396709	Splice_Site	T	C	.
LIHC	TCGA-EP-A2KA-01	GRID2IP	ENST00000452113.1,ENST00000435185.1,ENST00000457091.2	chr7	6560208:6560392:6561059:6561154:6561518:6561588,	6561060	6561154	6561059	6561059	Splice_Site	C	T	.
LIHC	TCGA-EP-A2KA-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48701711:48701799:48706850:48707062:48710797:48710958,	48706851	48707062	48707064	48707064	Splice_Site	T	A	.
LIHC	TCGA-EP-A2KA-01	FOCAD	ENST00000338382.6,ENST00000380249.1,ENST00000605086.1	chr9	20885107:20885229:20907148:20907241:20912864:20912907,	20907149	20907241	20907148	20907148	Splice_Site	G	T	.
LIHC	TCGA-EP-A2KA-01	APBB1IP	ENST00000376236.4	chr10	26822367:26822454:26825002:26825146:26830510:26830621,	26825003	26825146	26825148	26825148	Splice_Site	T	C	.
LIHC	TCGA-EP-A2KA-01	MADD	ENST00000524686.1,ENST00000342922.4,ENST00000402799.1,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47307028:47307141:47307983:47308085:47310941:47311044,	47307984	47308085	47307982	47307982	Splice_Site	A	G	.
LIHC	TCGA-EP-A2KA-01	COPS7A	ENST00000539735.1	chr12	6833246:6833318:6833779:6833984:6837388:6837477,6833255:6833416:6833779:6833984:6837388:6837477,6833300:6833345:6833779:6833984:6837388:6837477,6833300:6833345:6833779:6833984:6837091:6837167,6833255:6833416:6833779:6833984:6837091:6837167,	6833780	6833984	6833778	6833778	Splice_Site	A	G	.
LIHC	TCGA-EP-A2KA-01	EFTUD2	ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000590367.1,ENST00000426333.2	chr17	42936447:42936549:42937272:42937413:42937799:42937911,	42937273	42937413	42937415	42937415	Splice_Site	T	C	.
LIHC	TCGA-EP-A2KA-01	ZNF429	ENST00000358491.4,ENST00000597078.1	chr19	21688442:21688576:21712459:21712586:21713390:21713486,	21712460	21712586	21712459	21712459	Splice_Site	G	T	.
LIHC	TCGA-EP-A2KA-01	GAS2L1	ENST00000471961.1,ENST00000406549.3,ENST00000407647.2,ENST00000360113.2,ENST00000407854.1,ENST00000341313.6,ENST00000403764.1	chr22	29704076:29704728:29706428:29706536:29706627:29706724,	29706429	29706536	29706428	29706428	Splice_Site	G	T	.
LIHC	TCGA-EP-A2KA-01	PRR14L	ENST00000432485.1,ENST00000327423.6	chr22	32081027:32081789:32084141:32084213:32097641:32097748,	32084142	32084213	32084215	32084215	Splice_Site	T	C	.
LIHC	TCGA-RC-A7SK-01	LMNA	ENST00000368299.3,ENST00000361308.4,ENST00000469565.2,ENST00000347559.2,ENST00000368301.2,ENST00000368300.4	chr1	156084754:156085065:156100407:156100564:156104193:156104237,	156100408	156100564	156100406	156100406	Splice_Site	A	G	.
LIHC	TCGA-RC-A7SK-01	NAA15	ENST00000296543.5	chr4	140297530:140297627:140299909:140300008:140305985:140306132,	140299910	140300008	140299908	140299908	Splice_Site	A	G	.
LIHC	TCGA-WQ-A9G7-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000398123.2,ENST00000264758.7,ENST00000514940.1,ENST00000446856.1,ENST00000541051.1,ENST00000398125.1,ENST00000503455.2	chr4	2909556:2909571:2910241:2910331:2916610:2916767,	2910242	2910331	2910332	2910332	Splice_Site	G	A	.
LIHC	TCGA-WQ-A9G7-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000512408.2,ENST00000252050.4,ENST00000372647.2	chr6	43172097:43172277:43172485:43172595:43172670:43172853,	43172486	43172595	43172484	43172484	Splice_Site	A	C	.
LIHC	TCGA-RC-A6M3-01	PHC3	ENST00000495893.2,ENST00000475729.1,ENST00000494943.1	chr3	169863210:169863309:169866873:169867032:169889177:169889238,169863210:169863309:169866873:169867032:169889160:169889238,	169866874	169867032	169867033	169867033	Splice_Site	C	G	.
LIHC	TCGA-RC-A6M3-01	RIPK2	ENST00000220751.4,ENST00000522965.1,ENST00000540020.1	chr8	90792315:90792388:90796277:90796367:90798820:90798914,	90796278	90796367	90796369	90796370	Splice_Site	-	AAAA	.
LIHC	TCGA-2Y-A9H7-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396147	396147	Splice_Site	C	G	.
LIHC	TCGA-2Y-A9GZ-01	DGKQ	ENST00000509465.1,ENST00000273814.3	chr4	955254:955366:955475:955622:955769:955870,	955476	955622	955623	955623	Splice_Site	C	T	.
LIHC	TCGA-2Y-A9GZ-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878551	190878551	Splice_Site	A	T	.
LIHC	TCGA-2Y-A9GZ-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22671913:22672045:22775123:22775208:22804308:22804753,	22775124	22775208	22775123	22775123	Splice_Site	C	A	.
LIHC	TCGA-DD-A1EE-01	TRMT61B	ENST00000439947.1	chr2	29073193:29073271:29075273:29075365:29083983:29084174,	29075274	29075365	29075273	29075273	Splice_Site	C	T	.
LIHC	TCGA-DD-A1EE-01	SLC12A9	ENST00000462106.1,ENST00000540482.1,ENST00000354161.3,ENST00000428758.1	chr7	100450398:100450461:100451777:100452000:100454489:100454798,100450398:100450461:100451777:100452000:100456456:100456564,100450374:100450457:100451777:100452000:100454489:100454798,100450374:100450457:100451777:100452000:100452241:100452376,	100451778	100452000	100452001	100452001	Splice_Site	G	T	.
LIHC	TCGA-DD-A1EE-01	COL15A1	ENST00000375001.3	chr9	101747846:101748394:101749575:101749650:101751459:101751540,	101749576	101749650	101749575	101749575	Splice_Site	G	A	.
LIHC	TCGA-DD-A1EE-01	OSCAR	ENST00000356532.3,ENST00000359649.4	chr19	54600148:54600451:54602880:54602892:54603038:54603071,	54602881	54602892	54602893	54602893	Splice_Site	C	A	.
LIHC	TCGA-DD-AAE2-01	RALGAPA1	ENST00000382366.3,ENST00000258840.6,ENST00000389698.3	chr14	36008840:36008896:36017713:36017744:36018315:36018440,	36017714	36017744	36017745	36017745	Splice_Site	C	A	.
LIHC	TCGA-DD-AADG-01	FGF12	ENST00000454309.2	chr3	192053149:192053253:192078216:192078327:192444969:192444982,192053149:192053253:192078216:192078327:192125813:192126838,	192078217	192078327	192078328	192078328	Splice_Site	C	T	.
LIHC	TCGA-DD-AADG-01	SLC26A10	ENST00000490243.1,ENST00000474791.1,ENST00000440686.1,ENST00000320442.4,ENST00000474359.2,ENST00000379218.2,ENST00000487816.1	chr12	58018678:58018765:58018905:58018939:58019018:58019101,	58018906	58018939	58018905	58018905	Splice_Site	G	A	.
LIHC	TCGA-DD-AAD0-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160255339:160255405:160257109:160257175:160261359:160261421,	160257110	160257175	160257109	160257109	Splice_Site	C	A	.
LIHC	TCGA-DD-AAD0-01	NUSAP1	ENST00000260359.6,ENST00000450318.1,ENST00000560177.1,ENST00000558123.1,ENST00000559596.1	chr15	41650346:41650456:41657599:41657787:41663724:41663882,	41657600	41657787	41657598	41657598	Splice_Site	A	T	.
LIHC	TCGA-CC-A3MC-01	ACPP	ENST00000336375.5,ENST00000351273.7,ENST00000512463.1	chr3	132056299:132056398:132061395:132061488:132063770:132063903,	132061396	132061488	132061394	132061394	Splice_Site	A	C	.
LIHC	TCGA-WJ-A86L-01	HNF1A	ENST00000540108.1,ENST00000257555.6,ENST00000560968.1	chr12	121435276:121435468:121437070:121437192:121437285:121437430,	121437071	121437192	121437070	121437070	Splice_Site	G	A	.
LIHC	TCGA-DD-AADD-01	PIGN	ENST00000587942.1,ENST00000400334.3,ENST00000357637.5	chr18	59755988:59756075:59757708:59757811:59763080:59763183,	59757709	59757811	59757812	59757812	Splice_Site	C	T	.
LIHC	TCGA-MI-A75E-01	STXBP3	ENST00000472099.1,ENST00000370008.3	chr1	109339241:109339348:109340766:109340859:109342841:109342927,	109340767	109340859	109340861	109340861	Splice_Site	T	C	.
LIHC	TCGA-DD-A1EG-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639551	47639551	Splice_Site	A	T	.
LIHC	TCGA-DD-A1EG-01	EMC2	ENST00000519642.1,ENST00000517784.1,ENST00000220853.3	chr8	109465290:109465376:109468101:109468159:109482054:109482140,	109468102	109468159	109468100	109468100	Splice_Site	A	G	.
LIHC	TCGA-DD-A1EG-01	CLK3	ENST00000569406.1,ENST00000352989.5,ENST00000562078.1,ENST00000395066.3,ENST00000454830.2,ENST00000348245.3,ENST00000483723.1,ENST00000345005.4,ENST00000564468.1	chr15	74920944:74921024:74921282:74921373:74922047:74922303,	74921283	74921373	74921281	74921281	Splice_Site	A	G	.
LIHC	TCGA-DD-A1EG-01	HSPA12B	ENST00000399701.1	chr20	3719310:3719364:3722930:3723055:3725548:3725735,	3722931	3723055	3723057	3723057	Splice_Site	T	C	.
LIHC	TCGA-DD-A1EG-01	GPR155	ENST00000295500.4,ENST00000392552.2,ENST00000392551.2	chr2	175326129:175326220:175326315:175326400:175330512:175330630,	175326316	175326400	175326315	175326315	Splice_Site	C	-	.
LIHC	TCGA-UB-A7MF-01	MLST8	ENST00000564088.1,ENST00000562352.1,ENST00000562479.1,ENST00000570224.1,ENST00000563067.1,ENST00000397124.1,ENST00000569848.1,ENST00000564319.1,ENST00000301724.10,ENST00000569457.1,ENST00000566835.1,ENST00000565250.1,ENST00000301725.7,ENST00000567282.1,ENST00000568194.1,ENST00000569417.1,ENST00000565330.1,ENST00000561651.1,ENST00000568542.1,ENST00000382450.4,ENST00000562851.1	chr16	2256555:2256660:2257035:2257111:2257197:2257298,2256555:2256660:2257035:2257111:2257193:2257251,	2257036	2257111	2257035	2257035	Splice_Site	G	C	.
LIHC	TCGA-DD-AADS-01	SGCE	ENST00000415788.2,ENST00000450385.1	chr7	94257513:94257671:94259030:94259153:94273917:94273979,94257513:94257671:94259030:94259153:94285301:94285410,94257513:94257671:94259030:94259153:94268652:94268760,	94259031	94259153	94259029	94259029	Splice_Site	A	G	.
LIHC	TCGA-DD-AADS-01	KRT15	ENST00000393974.3,ENST00000254043.3,ENST00000393976.2	chr17	39670008:39670372:39670900:39670926:39671723:39671944,	39670901	39670926	39670928	39670928	Splice_Site	T	A	.
LIHC	TCGA-DD-A3A9-01	CDA	ENST00000375071.3	chr1	20931420:20931532:20940334:20940392:20944944:20945396,	20940335	20940392	20940334	20940334	Splice_Site	G	A	.
LIHC	TCGA-DD-A3A9-01	RGSL1	ENST00000542961.1,ENST00000443996.2,ENST00000367561.5,ENST00000294854.8	chr1	182441530:182441692:182442709:182443677:182457419:182457482,	182442710	182443677	182442708	182442708	Splice_Site	A	G	.
LIHC	TCGA-DD-A3A9-01	GNPAT	ENST00000366647.4,ENST00000469332.1,ENST00000366646.3	chr1	231411150:231411244:231411880:231411942:231413244:231413276,	231411881	231411942	231411879	231411879	Splice_Site	A	G	.
LIHC	TCGA-DD-A3A9-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203329548:203329702:203332241:203332412:203378441:203378552,	203332242	203332412	203332240	203332240	Splice_Site	A	G	.
LIHC	TCGA-DD-A3A9-01	BAP1	ENST00000296288.5,ENST00000471532.1,ENST00000460680.1	chr3	52440844:52440923:52441189:52441332:52441414:52441476,	52441190	52441332	52441334	52441334	Splice_Site	T	A	.
LIHC	TCGA-DD-A3A9-01	IFRD1	ENST00000466459.1	chr7	112101920:112101971:112102055:112102234:112108035:112108159,	112102056	112102234	112102235	112102235	Splice_Site	G	A	.
LIHC	TCGA-DD-A3A9-01	SYCP2	ENST00000446834.1,ENST00000471331.1,ENST00000357552.3,ENST00000371001.2	chr20	58487427:58487473:58489029:58489082:58489163:58489292,	58489030	58489082	58489028	58489028	Splice_Site	A	G	.
LIHC	TCGA-RC-A7S9-01	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49162438:49162602:49162685:49162917:49163179:49163323,	49162686	49162917	49162918	49162918	Splice_Site	C	A	.
LIHC	TCGA-RC-A7S9-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953788	48953788	Splice_Site	T	C	.
LIHC	TCGA-LG-A9QD-01	RCAN3	ENST00000374395.4	chr1	24840862:24841057:24859572:24859744:24861582:24861769,24857707:24857881:24859572:24859744:24861582:24861769,	24859573	24859744	24859572	24859572	Splice_Site	G	A	.
LIHC	TCGA-LG-A9QD-01	ALB	ENST00000415165.2,ENST00000484992.1,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74280751:74280884:74281972:74282070:74283804:74283820,74280751:74280884:74281972:74282070:74283247:74283331,	74281973	74282070	74282072	74282072	Splice_Site	T	G	.
LIHC	TCGA-ZP-A9CV-01	AKT3	ENST00000366539.1	chr1	243858892:243859018:244006426:244006584:244013341:244013430,	244006427	244006584	244006586	244006586	Splice_Site	T	A	.
LIHC	TCGA-DD-AADW-01	SERPINE2	ENST00000447280.2,ENST00000409840.3,ENST00000478966.1,ENST00000409304.1	chr2	224845027:224845114:224847397:224847498:224849468:224849667,	224847398	224847498	224847396	224847399	Splice_Site	TACT	-	.
LIHC	TCGA-G3-A5SM-01	TMEM176A	ENST00000475007.1,ENST00000475536.1	chr7	150500707:150500920:150501449:150501573:150501914:150502024,	150501450	150501573	150501448	150501448	Splice_Site	A	G	.
LIHC	TCGA-G3-A5SM-01	TMEM176A	ENST00000004103.3,ENST00000461345.1,ENST00000484928.1,ENST00000494349.1	chr7	150500707:150500920:150501449:150501560:150501914:150502024,	150501450	150501560	150501448	150501448	Splice_Site	A	G	.
LIHC	TCGA-G3-A5SM-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574035	7574035	Splice_Site	T	C	.
LIHC	TCGA-DD-A4NN-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155408117:155408859:155429587:155429689:155447676:155452240,	155429588	155429689	155429586	155429586	Splice_Site	G	T	.
LIHC	TCGA-CC-A8HT-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79385596:79385737:79387361:79387589:79391131:79391245,	79387362	79387589	79387360	79387360	Splice_Site	A	C	.
LIHC	TCGA-CC-A8HT-01	ADAMTS16	ENST00000274181.7,ENST00000433402.2	chr5	5222901:5222997:5232480:5232629:5235126:5235299,	5232481	5232629	5232631	5232631	Splice_Site	T	C	.
LIHC	TCGA-ED-A7PZ-01	CD44	ENST00000425428.2,ENST00000442151.2,ENST00000263398.6	chr11	35232810:35232996:35236398:35236461:35240862:35240934,35231511:35231601:35236398:35236461:35240862:35240934,35211556:35211612:35236398:35236461:35240862:35240934,	35236399	35236461	35236397	35236397	Splice_Site	A	T	.
LIHC	TCGA-DD-A3A1-01	HACL1	ENST00000456194.2,ENST00000435217.2,ENST00000422591.1,ENST00000383779.4,ENST00000321169.5,ENST00000451445.2	chr3	15609938:15610093:15613174:15613276:15614665:15614749,	15613175	15613276	15613278	15613278	Splice_Site	T	C	.
LIHC	TCGA-DD-A3A1-01	MED10	ENST00000255764.3	chr5	6372277:6372714:6374436:6374539:6377278:6377362,	6374437	6374539	6374436	6374436	Splice_Site	C	T	.
LIHC	TCGA-DD-A3A1-01	XPO7	ENST00000433566.4,ENST00000434536.1,ENST00000252512.9	chr8	21847854:21847918:21848321:21848430:21849378:21849485,	21848322	21848430	21848320	21848320	Splice_Site	A	G	.
LIHC	TCGA-DD-A3A1-01	SCAF11	ENST00000474828.1,ENST00000395453.2,ENST00000369367.3,ENST00000395454.2	chr12	46355482:46355640:46357889:46357971:46384135:46384348,	46357890	46357971	46357973	46357973	Splice_Site	T	C	.
LIHC	TCGA-DD-A3A1-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50878588:50878685:50881788:50881853:50884107:50884823,	50881789	50881853	50881855	50881855	Splice_Site	T	C	.
LIHC	TCGA-UB-A7ME-01	MATN4	ENST00000537548.1,ENST00000342716.4,ENST00000372756.1	chr20	43929741:43929864:43929960:43930083:43932867:43932921,	43929961	43930083	43929960	43929960	Splice_Site	C	-	.
LIHC	TCGA-DD-AACI-01	EVI5	ENST00000492613.1,ENST00000370331.1,ENST00000540033.1	chr1	93101758:93101893:93131495:93131549:93142714:93142734,	93131496	93131549	93131551	93131551	Splice_Site	T	G	.
LIHC	TCGA-DD-AACI-01	CCDC138	ENST00000295124.4,ENST00000412964.2	chr2	109405307:109405422:109408130:109408258:109410995:109411126,	109408131	109408258	109408129	109408129	Splice_Site	A	T	.
LIHC	TCGA-DD-AACI-01	LRRFIP2	ENST00000481682.1,ENST00000416425.1,ENST00000336686.4,ENST00000421307.1,ENST00000421276.2,ENST00000440230.1	chr3	37125135:37125297:37132957:37133029:37136282:37136399,	37132958	37133029	37133031	37133031	Splice_Site	T	C	.
LIHC	TCGA-DD-AACI-01	DDC	ENST00000444733.1	chr7	50547484:50547561:50563047:50563115:50566845:50566940,50547484:50547561:50563047:50563115:50571690:50571757,	50563048	50563115	50563117	50563117	Splice_Site	T	A	.
LIHC	TCGA-DD-AACI-01	NTM	ENST00000550167.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132016175:132016408:132081915:132082041:132177582:132177656,	132081916	132082041	132081914	132081914	Splice_Site	A	T	.
LIHC	TCGA-DD-AACI-01	TMTC2	ENST00000321196.3,ENST00000548305.1	chr12	83081259:83081448:83250788:83251359:83289596:83290425,	83250789	83251359	83251361	83251361	Splice_Site	T	A	.
LIHC	TCGA-2Y-A9H8-01	GGA2	ENST00000309859.4	chr16	23481316:23481486:23486224:23486382:23489688:23489822,	23486225	23486382	23486224	23486224	Splice_Site	C	G	.
LIHC	TCGA-EP-A2KB-01	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220161931:220162165:220170324:220170684:220174479:220174597,	220170325	220170684	220170686	220170686	Splice_Site	T	C	.
LIHC	TCGA-EP-A2KB-01	SETD3	ENST00000329331.3,ENST00000331768.5,ENST00000436070.2	chr14	99925449:99925522:99927528:99927677:99929822:99929915,	99927529	99927677	99927679	99927679	Splice_Site	T	C	.
LIHC	TCGA-DD-AAEA-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000360280.3,ENST00000357409.5	chr9	79853187:79853302:79862174:79862311:79865012:79865145,	79862175	79862311	79862174	79862174	Splice_Site	G	T	.
LIHC	TCGA-DD-AAEA-01	TSPAN4	ENST00000409531.1,ENST00000527644.1,ENST00000397411.2,ENST00000397408.1,ENST00000397404.1,ENST00000346501.4,ENST00000397397.2,ENST00000409543.2,ENST00000397406.1	chr11	847200:847300:862549:862741:864436:864511,850287:850367:862549:862741:864436:864511,	862550	862741	862548	862548	Splice_Site	A	G	.
LIHC	TCGA-DD-A4NP-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112102885:112103087:112111325:112111434:112116486:112116600,	112111326	112111434	112111324	112111324	Splice_Site	A	G	.
LIHC	TCGA-CC-A7IG-01	SNTG2	ENST00000407292.1,ENST00000308624.5	chr2	1204788:1204916:1241659:1241789:1243509:1243548,	1241660	1241789	1241790	1241790	Splice_Site	G	A	.
LIHC	TCGA-WX-AA44-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576928	7576928	Splice_Site	T	C	.
LIHC	TCGA-DD-A1EF-01	SLC12A9	ENST00000462106.1,ENST00000540482.1,ENST00000354161.3,ENST00000428758.1	chr7	100450398:100450461:100451777:100452000:100454489:100454798,100450398:100450461:100451777:100452000:100456456:100456564,100450374:100450457:100451777:100452000:100454489:100454798,100450374:100450457:100451777:100452000:100452241:100452376,	100451778	100452000	100452001	100452001	Splice_Site	G	T	.
LIHC	TCGA-DD-A1EF-01	TG	ENST00000542445.1,ENST00000519178.1	chr8	133953688:133953787:133961020:133961188:133973252:133973318,133948000:133948109:133961020:133961188:133973252:133973318,	133961021	133961188	133961019	133961019	Splice_Site	A	G	.
LIHC	TCGA-CC-5262-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000401921.1,ENST00000523867.1,ENST00000461159.2	chr7	18806728:18806778:18832967:18833075:18868783:18868839,	18832968	18833075	18833076	18833076	Splice_Site	G	A	.
LIHC	TCGA-G3-A7M7-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000406599.1,ENST00000443427.1,ENST00000338799.5,ENST00000456483.2	chr6	152382125:152382259:152415519:152415703:152419866:152420113,	152415520	152415703	152415519	152415519	Splice_Site	G	A	.
LIHC	TCGA-BD-A3EP-01	SUN1	ENST00000477950.1,ENST00000403868.1,ENST00000456758.2,ENST00000405266.1,ENST00000389574.3,ENST00000457378.2,ENST00000493681.1,ENST00000413171.2,ENST00000467483.1,ENST00000435699.1,ENST00000340926.3,ENST00000401592.1,ENST00000425407.2	chr7	881582:881767:882842:882869:882977:883022,	882843	882869	882841	882841	Splice_Site	A	G	.
LIHC	TCGA-BD-A3EP-01	FAIM2	ENST00000320634.3,ENST00000552669.1,ENST00000550195.1,ENST00000550890.1	chr12	50264405:50264436:50281168:50281222:50282889:50282985,	50281169	50281222	50281167	50281167	Splice_Site	A	T	.
LIHC	TCGA-DD-A1EC-01	CEP290	ENST00000397838.3,ENST00000309041.7,ENST00000552810.1,ENST00000604024.1	chr12	88505470:88505635:88508196:88508339:88508874:88508959,	88508197	88508339	88508195	88508195	Splice_Site	A	C	.
LIHC	TCGA-K7-A5RG-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576928	7576928	Splice_Site	T	C	.
LIHC	TCGA-LG-A9QC-01	SPTBN4	ENST00000599926.1,ENST00000352632.3,ENST00000392025.1,ENST00000598249.1,ENST00000595690.1,ENST00000597389.1	chr19	41077924:41078098:41078243:41078286:41081316:41081475,	41078244	41078286	41078287	41078287	Splice_Site	G	T	.
LIHC	TCGA-G3-A3CK-01	IGSF5	ENST00000380588.4	chr21	41151016:41151232:41160093:41160115:41163934:41164026,	41160094	41160115	41160116	41160116	Splice_Site	G	A	.
LIHC	TCGA-DD-A3A7-01	ATF7IP	ENST00000544627.1,ENST00000540793.1,ENST00000543189.1,ENST00000536444.1,ENST00000261168.4	chr12	14628823:14628902:14631250:14631406:14633936:14634119,	14631251	14631406	14631250	14631250	Splice_Site	G	T	.
LIHC	TCGA-DD-A3A7-01	KDM8	ENST00000441782.2,ENST00000286096.4	chr16	27221902:27221942:27224905:27225072:27226196:27226329,	27224906	27225072	27225073	27225073	Splice_Site	G	C	.
LIHC	TCGA-DD-A39Z-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197090495:197090594:197092825:197092978:197105172:197105286,	197092826	197092978	197092980	197092980	Splice_Site	T	C	.
LIHC	TCGA-DD-A39Z-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888460:30888544:30890136:30890197:30890852:30890948,	30890137	30890197	30890136	30890136	Splice_Site	C	T	.
LIHC	TCGA-G3-AAV4-01	INTS7	ENST00000366994.3,ENST00000366992.3,ENST00000366993.3	chr1	212190227:212190365:212193463:212193610:212194424:212194554,	212193464	212193610	212193463	212193463	Splice_Site	C	T	.
LIHC	TCGA-CC-A9FW-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000488035.1,ENST00000456040.1,ENST00000410054.1,ENST00000264160.4,ENST00000329971.3	chr2	136380223:136380302:136389287:136389347:136389430:136389508,	136389288	136389347	136389287	136389287	Splice_Site	G	A	.
LIHC	TCGA-CC-A9FW-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56079290	56079290	Splice_Site	G	A	.
LIHC	TCGA-DD-A1EA-01	COL15A1	ENST00000375001.3	chr9	101747846:101748394:101749575:101749650:101751459:101751540,	101749576	101749650	101749575	101749575	Splice_Site	G	A	.
LIHC	TCGA-XR-A8TG-01	PEX5L	ENST00000485199.1	chr3	179605460:179605572:179689381:179689453:179754366:179754558,	179689382	179689453	179689381	179689381	Splice_Site	C	T	.
LIHC	TCGA-XR-A8TG-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971209	21971209	Splice_Site	T	A	.
LIHC	TCGA-XR-A8TG-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971209	21971209	Splice_Site	T	A	.
LIHC	TCGA-DD-AADV-01	KRT40	ENST00000461923.1,ENST00000398486.2	chr17	39139297:39139380:39140078:39140526:39142555:39142626,	39140079	39140526	39140078	39140078	Splice_Site	C	T	.
LIHC	TCGA-DD-A1EB-01	PHIP	ENST00000479165.1,ENST00000275034.4	chr6	79680497:79680605:79688308:79688428:79692602:79692660,	79688309	79688428	79688429	79688429	Splice_Site	C	A	.
LIHC	TCGA-DD-A1EB-01	SUGT1	ENST00000310528.8,ENST00000535397.1,ENST00000343788.6	chr13	53250364:53250455:53254108:53254290:53261868:53262007,	53254109	53254290	53254291	53254291	Splice_Site	G	T	.
LIHC	TCGA-DD-A1EB-01	DMD	ENST00000378680.2,ENST00000361471.4,ENST00000359836.1,ENST00000343523.2,ENST00000474231.1,ENST00000541735.1,ENST00000378723.3,ENST00000358062.2,ENST00000378702.4,ENST00000378707.3,ENST00000378705.3,ENST00000357033.4,ENST00000378677.2	chrX	31198486:31198598:31200854:31201021:31222077:31222235,	31200855	31201021	31200854	31200854	Splice_Site	C	A	.
LIHC	TCGA-2Y-A9HA-01	WDR78	ENST00000431318.1,ENST00000371022.3,ENST00000371023.3	chr1	67358959:67359096:67370883:67371058:67390344:67390379,	67370884	67371058	67371059	67371059	Splice_Site	C	T	.
LIHC	TCGA-2Y-A9H3-01	CNOT6	ENST00000393356.1,ENST00000261951.4	chr5	179976930:179977117:179980385:179980471:179991488:179991578,	179980386	179980471	179980384	179980384	Splice_Site	A	G	.
LIHC	TCGA-2Y-A9H3-01	GLI3	ENST00000479210.1,ENST00000395925.3	chr7	42007193:42007521:42011935:42012226:42017156:42017321,	42011936	42012226	42011935	42011935	Splice_Site	C	A	.
LIHC	TCGA-DD-AADC-01	EMP2	ENST00000536829.1,ENST00000359543.3	chr16	10626705:10626949:10631784:10631931:10637426:10637517,	10631785	10631931	10631932	10631932	Splice_Site	C	A	.
LIHC	TCGA-G3-A25Y-01	SKA3	ENST00000314759.5,ENST00000465471.1,ENST00000298260.4,ENST00000400018.3	chr13	21735928:21736014:21742126:21742538:21746477:21746643,	21742127	21742538	21742126	21742126	Splice_Site	C	A	.
LIHC	TCGA-G3-A25Y-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953728	48953728	Splice_Site	A	G	.
LIHC	TCGA-G3-A3CJ-01	SCAP	ENST00000265565.5	chr3	47458611:47458697:47458793:47459316:47459623:47459739,	47458794	47459316	47459317	47459317	Splice_Site	C	T	.
LIHC	TCGA-G3-A3CJ-01	ALB	ENST00000415165.2,ENST00000484992.1,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74280751:74280884:74281972:74282070:74283804:74283820,74280751:74280884:74281972:74282070:74283247:74283331,	74281973	74282070	74282071	74282071	Splice_Site	G	A	.
LIHC	TCGA-G3-A3CJ-01	ENPP3	ENST00000414305.1,ENST00000357639.3,ENST00000358229.5	chr6	132059170:132059303:132061363:132061520:132067925:132068096,	132061364	132061520	132061522	132061522	Splice_Site	T	A	.
LIHC	TCGA-G3-A3CJ-01	PNLDC1	ENST00000392167.3,ENST00000275275.5,ENST00000610273.1	chr6	160229771:160229848:160230046:160230190:160231057:160231127,	160230047	160230190	160230045	160230045	Splice_Site	A	G	.
LIHC	TCGA-G3-A3CJ-01	OTUB1	ENST00000422031.2,ENST00000428192.2,ENST00000543004.1,ENST00000543988.1,ENST00000538426.1,ENST00000535715.1	chr11	63764001:63764120:63764328:63764413:63764521:63764716,	63764329	63764413	63764415	63764415	Splice_Site	T	C	.
LIHC	TCGA-G3-A3CJ-01	UCHL3	ENST00000471792.2,ENST00000377595.3	chr13	76141362:76141448:76143595:76143643:76169050:76169126,	76143596	76143643	76143594	76143594	Splice_Site	A	G	.
LIHC	TCGA-G3-A3CJ-01	PPIC	ENST00000306442.4	chr5	122361478:122361663:122364469:122364563:122364999:122365113,	122364470	122364563	122364469	122364469	Splice_Site	C	-	.
LIHC	TCGA-2Y-A9H5-01	SLC10A7	ENST00000394059.4,ENST00000335472.7,ENST00000432059.2,ENST00000507030.1,ENST00000511315.1,ENST00000394062.3	chr4	147425000:147425076:147431064:147431201:147438189:147438272,	147431065	147431201	147431063	147431063	Splice_Site	A	T	.
LIHC	TCGA-O8-A75V-01	GPATCH8	ENST00000591680.1	chr17	42541839:42541912:42552196:42552271:42580693:42580757,	42552197	42552271	42552196	42552196	Splice_Site	C	A	.
LIHC	TCGA-CC-A3MB-01	WDR1	ENST00000499869.2,ENST00000382452.2,ENST00000508079.1	chr4	10089916:10089997:10090287:10090365:10099334:10099515,	10090288	10090365	10090367	10090367	Splice_Site	T	C	.
LIHC	TCGA-CC-A3MB-01	EHD4	ENST00000569223.1	chr15	42235264:42235362:42245961:42246138:42264456:42264750,	42245962	42246138	42245961	42245961	Splice_Site	C	A	.
LIHC	TCGA-DD-A39W-01	ARAP3	ENST00000513878.1,ENST00000508305.1,ENST00000239440.4	chr5	141051461:141051547:141051668:141051868:141052118:141052225,	141051669	141051868	141051870	141051870	Splice_Site	T	A	.
LIHC	TCGA-DD-A39W-01	CAPNS1	ENST00000588780.1,ENST00000588815.1,ENST00000589146.1,ENST00000590874.1,ENST00000589162.1,ENST00000587718.1,ENST00000246533.3	chr19	36636938:36636956:36637097:36637214:36640479:36640482,	36637098	36637214	36637097	36637097	Splice_Site	G	C	.
LIHC	TCGA-DD-A39W-01	PHPT1	ENST00000497413.1,ENST00000371661.1,ENST00000545326.1	chr9	139744464:139744589:139744957:139745012:139745206:139745474,	139744958	139745012	139744956	139744962	Splice_Site	CAGCAGA	-	.
LIHC	TCGA-G3-A5SL-01	SEC24B	ENST00000265175.5,ENST00000504968.2,ENST00000399100.2	chr4	110442272:110442328:110442575:110442782:110445973:110446097,	110442576	110442782	110442575	110442575	Splice_Site	G	A	.
LIHC	TCGA-G3-A5SL-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21392398:21392494:21555919:21556060:21581734:21581928,	21555920	21556060	21555918	21555918	Splice_Site	A	G	.
LIHC	TCGA-DD-AADY-01	SKA3	ENST00000314759.5,ENST00000465471.1,ENST00000298260.4,ENST00000400018.3	chr13	21735928:21736014:21742126:21742538:21746477:21746643,	21742127	21742538	21742126	21742126	Splice_Site	C	A	.
LIHC	TCGA-MI-A75I-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44833910:44833960:44870205:44870264:44879854:44879975,	44870206	44870264	44870266	44870266	Splice_Site	T	G	.
LIHC	TCGA-BD-A3ER-01	NPR3	ENST00000415167.2,ENST00000265074.8	chr5	32710759:32710889:32724803:32724926:32738969:32739136,32712436:32712651:32724803:32724926:32738969:32739136,	32724804	32724926	32724927	32724927	Splice_Site	G	T	.
LIHC	TCGA-BD-A3ER-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000439616.2,ENST00000543843.1,ENST00000447398.1,ENST00000449767.1	chr7	44739739:44739868:44741141:44741214:44746823:44746987,	44741142	44741214	44741215	44741216	Splice_Site	-	T	.
LIHC	TCGA-G3-A3CG-01	THBS3	ENST00000457183.2,ENST00000541576.1,ENST00000368378.3,ENST00000541990.1	chr1	155166831:155167004:155167253:155167450:155167670:155167719,	155167254	155167450	155167451	155167451	Splice_Site	C	T	.
LIHC	TCGA-G3-A3CG-01	TAB3	ENST00000378932.2	chrX	30861104:30861166:30864667:30864761:30870894:30871004,30852167:30852269:30864667:30864761:30870894:30871004,	30864668	30864761	30864763	30864763	Splice_Site	T	C	.
LIHC	TCGA-DD-AACT-01	WWC1	ENST00000521089.1,ENST00000265293.4,ENST00000393895.3	chr5	167826492:167826572:167833202:167833332:167835511:167835613,	167833203	167833332	167833201	167833201	Splice_Site	A	T	.
LIHC	TCGA-DD-AACT-01	ATAD2	ENST00000287394.5,ENST00000521903.1,ENST00000517666.1,ENST00000521496.1	chr8	124382060:124382264:124383142:124383230:124383475:124383578,	124383143	124383230	124383232	124383232	Splice_Site	T	A	.
LIHC	TCGA-DD-AACT-01	CPSF1	ENST00000349769.3	chr8	145622957:145623094:145623168:145623347:145623691:145623833,	145623169	145623347	145623168	145623168	Splice_Site	C	T	.
LIHC	TCGA-DD-AACT-01	SMARCA2	ENST00000349721.2,ENST00000382203.1,ENST00000357248.2,ENST00000382194.1	chr9	2110253:2110417:2115821:2116049:2119457:2119535,	2115822	2116049	2115820	2115820	Splice_Site	A	T	.
LIHC	TCGA-DD-AACT-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1	chr11	47819919:47820015:47823362:47823482:47824989:47825088,	47823363	47823482	47823484	47823484	Splice_Site	T	C	.
LIHC	TCGA-FV-A495-01	PRSS16	ENST00000481125.1	chr6	27215673:27215827:27220586:27220728:27222471:27222478,27216878:27217008:27220586:27220728:27222471:27222478,27216714:27216725:27220586:27220728:27222471:27222478,27218995:27219043:27220586:27220728:27222764:27222898,27218995:27219043:27220586:27220728:27222471:27222478,27219528:27219819:27220586:27220728:27222471:27222478,27219100:27219280:27220586:27220728:27222764:27222910,27219528:27219819:27220586:27220728:27222764:27222898,	27220587	27220728	27220730	27220730	Splice_Site	T	C	.
LIHC	TCGA-5R-AA1C-01	TMEM67	ENST00000323130.3,ENST00000452276.1,ENST00000453321.3,ENST00000521517.1	chr8	94768005:94768094:94770710:94770804:94776069:94776161,	94770711	94770804	94770709	94770709	Splice_Site	A	G	.
LIHC	TCGA-DD-A73A-01	FANCB	ENST00000452869.1,ENST00000324138.3,ENST00000398334.1	chrX	14871160:14871289:14875983:14876076:14877303:14877456,	14875984	14876076	14876077	14876077	Splice_Site	C	T	.
LIHC	TCGA-DD-AAW2-01	EPS8L2	ENST00000530452.2	chr11	721284:721352:721564:721691:722400:722500,	721565	721691	721563	721563	Splice_Site	A	T	.
LIHC	TCGA-DD-AAW2-01	ACE2	ENST00000252519.3,ENST00000427411.1	chrX	15607466:15607579:15609835:15609979:15610351:15610445,	15609836	15609979	15609834	15609834	Splice_Site	A	G	.
LIHC	TCGA-5C-A9VG-01	MEIS2	ENST00000338564.5,ENST00000219869.9,ENST00000557796.2,ENST00000607277.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000397624.3,ENST00000340545.5,ENST00000382766.2,ENST00000559561.1,ENST00000561208.1,ENST00000424352.2	chr15	37188828:37188887:37242524:37242601:37329014:37329160,	37242525	37242601	37242602	37242602	Splice_Site	C	T	.
LIHC	TCGA-5C-A9VG-01	CHRNB1	ENST00000536404.2,ENST00000576360.1,ENST00000306071.2	chr17	7358602:7358775:7359112:7359260:7359901:7360245,	7359113	7359260	7359261	7359261	Splice_Site	G	C	.
LIHC	TCGA-KR-A7K8-01	CLEC1A	ENST00000315330.4,ENST00000457018.2	chr12	10225891:10226010:10228102:10228254:10233835:10234012,	10228103	10228254	10228256	10228256	Splice_Site	T	C	.
LIHC	TCGA-EP-A2KC-01	MTOR	ENST00000361445.4	chr1	11316048:11316249:11316989:11317222:11318541:11318650,	11316990	11317222	11316988	11316988	Splice_Site	A	T	.
LIHC	TCGA-DD-AAD5-01	SNX4	ENST00000536067.1,ENST00000251775.4,ENST00000471751.1	chr3	125188297:125188363:125195538:125195600:125199090:125199163,	125195539	125195600	125195601	125195601	Splice_Site	C	A	.
LIHC	TCGA-DD-AAD5-01	POLR1C	ENST00000481352.2,ENST00000488601.2,ENST00000428025.2,ENST00000423780.1,ENST00000372389.3,ENST00000455605.2,ENST00000304004.3,ENST00000372344.2	chr6	43485043:43485115:43487070:43487178:43487443:43487576,	43487071	43487178	43487179	43487179	Splice_Site	G	T	.
LIHC	TCGA-CC-A1HT-01	MME	ENST00000462745.1,ENST00000492661.1,ENST00000493237.1,ENST00000360490.2,ENST00000460393.1	chr3	154886520:154886586:154889905:154890001:154890324:154890401,	154889906	154890001	154890002	154890002	Splice_Site	G	T	.
LIHC	TCGA-G3-AAV3-01	HAGHL	ENST00000564537.1	chr16	777118:777140:777411:777614:777964:778029,777105:777175:777411:777614:777964:778029,	777412	777614	777615	777615	Splice_Site	G	T	.
LIHC	TCGA-G3-AAV3-01	HAGHL	ENST00000562141.1	chr16	777118:777140:777481:777614:777964:778029,	777482	777614	777615	777615	Splice_Site	G	T	.
LIHC	TCGA-NI-A8LF-01	OCIAD2	ENST00000510159.1	chr4	48899857:48899874:48901845:48901942:48906500:48906628,48899820:48899852:48901845:48901942:48906500:48906628,	48901846	48901942	48901944	48901944	Splice_Site	T	C	.
LIHC	TCGA-DD-AACP-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48766643:48766775:48767782:48767934:48769716:48769860,	48767783	48767934	48767935	48767935	Splice_Site	C	T	.
LIHC	TCGA-DD-AACP-01	RPS6KA3	ENST00000479809.1,ENST00000379548.4,ENST00000540702.1,ENST00000544447.1,ENST00000379565.3	chrX	20185706:20185865:20187519:20187609:20190863:20190982,	20187520	20187609	20187519	20187519	Splice_Site	C	T	.
LIHC	TCGA-EP-A12J-01	OSCAR	ENST00000356532.3,ENST00000359649.4	chr19	54600148:54600451:54602880:54602892:54603038:54603071,	54602881	54602892	54602893	54602893	Splice_Site	C	A	.
LIHC	TCGA-ED-A66Y-01	USP34	ENST00000463046.1,ENST00000398571.2	chr2	61420035:61420115:61430274:61430398:61431390:61431465,	61430275	61430398	61430400	61430400	Splice_Site	T	G	.
LIHC	TCGA-ED-A66Y-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951053	48951053	Splice_Site	G	A	.
LIHC	TCGA-ED-A66Y-01	GRAMD4	ENST00000361034.3,ENST00000406902.1	chr22	47022657:47022858:47033736:47033857:47054083:47054204,	47033737	47033857	47033858	47033858	Splice_Site	G	C	.
LIHC	TCGA-DD-AAEE-01	FOSB	ENST00000591858.1,ENST00000592436.1,ENST00000586615.1,ENST00000592811.1,ENST00000353609.3,ENST00000589593.1	chr19	45974003:45974207:45974451:45974559:45975808:45975811,	45974452	45974559	45974560	45974560	Splice_Site	G	T	.
LIHC	TCGA-DD-A4NF-01	NSUN3	ENST00000483378.1,ENST00000314622.4	chr3	93803198:93803294:93812983:93813138:93813876:93813938,	93812984	93813138	93812983	93812983	Splice_Site	G	T	.
LIHC	TCGA-DD-A11A-01	CBR4	ENST00000306193.3	chr4	169815720:169815916:169923221:169923356:169927905:169927939,169908740:169911479:169923221:169923356:169927905:169927939,	169923222	169923356	169923357	169923357	Splice_Site	C	G	.
LIHC	TCGA-DD-A11A-01	TPH1	ENST00000341556.2,ENST00000250018.2	chr11	18048036:18048172:18050711:18050908:18051058:18051126,	18050712	18050908	18050909	18050909	Splice_Site	C	G	.
LIHC	TCGA-DD-A3A0-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000445090.1,ENST00000390005.5,ENST00000273009.6,ENST00000424049.1	chr2	233103242:233103355:233113948:233114056:233127916:233128072,	233113949	233114056	233113947	233113947	Splice_Site	A	G	.
LIHC	TCGA-DD-A3A0-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454605	88454605	Splice_Site	A	T	.
LIHC	TCGA-DD-A3A0-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454606	88454606	Splice_Site	C	A	.
LIHC	TCGA-DD-A3A0-01	NUBPL	ENST00000536705.1,ENST00000281081.7,ENST00000548937.1,ENST00000551314.1,ENST00000547839.1,ENST00000552489.1	chr14	32068494:32068585:32142560:32142600:32142689:32142714,	32142561	32142600	32142559	32142559	Splice_Site	A	C	.
LIHC	TCGA-DD-A3A0-01	SMARCA4	ENST00000590574.1,ENST00000344626.4,ENST00000589677.1,ENST00000429416.3,ENST00000358026.2,ENST00000450717.3,ENST00000591545.1,ENST00000541122.2,ENST00000413806.3,ENST00000444061.3	chr19	11098341:11098600:11099992:11100119:11101825:11101999,	11099993	11100119	11099991	11099991	Splice_Site	A	G	.
LIHC	TCGA-DD-A3A0-01	ZNF230	ENST00000585568.1,ENST00000585632.1	chr19	44507129:44507259:44511162:44511245:44512941:44513068,	44511163	44511245	44511161	44511161	Splice_Site	A	G	.
LIHC	TCGA-DD-A3A0-01	OSBPL2	ENST00000439951.2	chr20	60859101:60859225:60861638:60861767:60864262:60864386,60859101:60859225:60861638:60861767:60866758:60866849,	60861639	60861767	60861769	60861769	Splice_Site	T	C	.
LIHC	TCGA-DD-A3A0-01	WFDC3	ENST00000493693.1	chr20	44405713:44405848:44416474:44416621:44417569:44417698,44404149:44404241:44416474:44416621:44420470:44420507,44404149:44404241:44416474:44416621:44417569:44417698,	44416475	44416621	44416474	44416474	Splice_Site	C	-	.
LIHC	TCGA-FV-A2QR-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000465835.1,ENST00000413697.1	chr2	100027156:100027329:100029192:100029413:100035289:100035409,	100029193	100029413	100029414	100029414	Splice_Site	C	T	.
LIHC	TCGA-DD-AAW0-01	FETUB	ENST00000382136.3	chr3	186358818:186358929:186360259:186360347:186362539:186362701,186358248:186358474:186360259:186360347:186362539:186362701,	186360260	186360347	186360348	186360349	Splice_Site	-	T	.
LIHC	TCGA-BC-A112-01	CMIP	ENST00000537098.3,ENST00000539778.2,ENST00000398040.4,ENST00000566513.1	chr16	81735264:81735405:81736226:81736274:81737543:81737690,	81736227	81736274	81736275	81736275	Splice_Site	G	A	.
LIHC	TCGA-BC-A112-01	GUF1	ENST00000506793.1,ENST00000281543.5	chr4	44691859:44691992:44692733:44692877:44693682:44693816,	44692734	44692877	44692732	44692732	Splice_Site	A	T	.
LIHC	TCGA-CC-5259-01	UBE2D3	ENST00000505009.1,ENST00000502404.1,ENST00000508474.1,ENST00000504211.1,ENST00000338145.3,ENST00000505307.1,ENST00000343106.5,ENST00000507845.1,ENST00000505207.1,ENST00000394803.5,ENST00000510129.1,ENST00000508635.1,ENST00000349311.8,ENST00000394801.4,ENST00000350435.7,ENST00000453744.2,ENST00000321805.7,ENST00000357194.6,ENST00000394804.2	chr4	103720623:103720657:103722610:103722716:103723717:103723795,	103722611	103722716	103722609	103722609	Splice_Site	A	C	.
LIHC	TCGA-G3-AAV0-01	AP2B1	ENST00000592191.1,ENST00000262325.7,ENST00000589344.1,ENST00000312678.8,ENST00000537622.2,ENST00000592545.1,ENST00000545922.2,ENST00000538556.1	chr17	33966613:33966779:33968895:33968994:33977548:33977808,	33968896	33968994	33968894	33968894	Splice_Site	A	T	.
LIHC	TCGA-ZP-A9D2-01	HNF4A	ENST00000316673.4,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000316099.4	chr20	43048360:43048516:43052657:43052894:43056974:43057097,	43052658	43052894	43052656	43052656	Splice_Site	A	T	.
LIHC	TCGA-EP-A3JL-01	ZCCHC7	ENST00000461038.1,ENST00000336755.5	chr9	37120559:37120620:37302184:37302228:37304184:37304310,37126308:37126939:37302184:37302228:37304184:37304310,	37302185	37302228	37302184	37302184	Splice_Site	G	A	.
LIHC	TCGA-KR-A7K0-01	SPNS1	ENST00000323081.8,ENST00000565975.1,ENST00000568829.1,ENST00000334536.8,ENST00000311008.11,ENST00000352260.7	chr16	28994512:28994611:28995106:28995278:28995525:28995760,	28995107	28995278	28995279	28995279	Splice_Site	G	A	.
LIHC	TCGA-DD-AACC-01	ACTL6A	ENST00000450518.2,ENST00000429709.2,ENST00000392662.1	chr3	179301140:179301236:179304333:179304420:179305717:179306029,	179304334	179304420	179304422	179304422	Splice_Site	T	G	.
LIHC	TCGA-DD-A4NI-01	SERPINC1	ENST00000367698.3	chr1	173879891:173880029:173880936:173881152:173883690:173883803,	173880937	173881152	173880936	173880936	Splice_Site	C	T	.
LIHC	TCGA-DD-A4NI-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000476846.1,ENST00000437633.1	chr7	111512522:111512620:111517085:111517242:111535667:111535774,	111517086	111517242	111517084	111517084	Splice_Site	A	G	.
LIHC	TCGA-DD-A4NI-01	UPF3A	ENST00000480362.1,ENST00000351487.5	chr13	115048353:115048418:115051993:115052104:115056963:115057019,	115051994	115052104	115052106	115052106	Splice_Site	T	C	.
LIHC	TCGA-DD-AAEB-01	SLC26A7	ENST00000522181.1	chr8	92330443:92330608:92346522:92346675:92352631:92352779,	92346523	92346675	92346676	92346676	Splice_Site	G	T	.
LIHC	TCGA-DD-AADB-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137622857:137622956:137625189:137625252:137626327:137626378,	137625190	137625252	137625188	137625188	Splice_Site	A	G	.
LIHC	TCGA-DD-AADB-01	ETHE1	ENST00000598330.1,ENST00000594342.1	chr19	44012926:44013016:44015588:44015718:44030352:44030468,44012926:44013016:44015588:44015718:44030666:44030811,	44015589	44015718	44015587	44015587	Splice_Site	A	T	.
LIHC	TCGA-BC-A10Z-01	TMEM8B	ENST00000464519.2,ENST00000377991.4,ENST00000377988.2,ENST00000377996.1,ENST00000439587.2	chr9	35841130:35841264:35841522:35841791:35842388:35842464,	35841523	35841791	35841793	35841793	Splice_Site	T	A	.
LIHC	TCGA-XR-A8TC-01	CDC42BPA	ENST00000366767.3	chr1	227288692:227288940:227300012:227300123:227307504:227307638,	227300013	227300123	227300124	227300124	Splice_Site	C	T	.
LIHC	TCGA-DD-A119-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91700218:91700323:91706168:91706321:91707009:91707189,	91706169	91706321	91706167	91706167	Splice_Site	A	G	.
LIHC	TCGA-DD-A119-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46455023:46455178:46456398:46456587:46465037:46465148,	46456399	46456587	46456589	46456589	Splice_Site	T	C	.
LIHC	TCGA-DD-A119-01	VPS37C	ENST00000301765.5,ENST00000538036.1	chr11	60899915:60900011:60900726:60900809:60901507:60901679,	60900727	60900809	60900811	60900811	Splice_Site	T	C	.
LIHC	TCGA-DD-A119-01	PTPRO	ENST00000544244.1,ENST00000445537.2,ENST00000348962.2,ENST00000542557.1,ENST00000281171.4,ENST00000442921.2	chr12	15702027:15702160:15704484:15704605:15710388:15710457,	15704485	15704605	15704607	15704607	Splice_Site	T	C	.
LIHC	TCGA-DD-A119-01	SKA3	ENST00000314759.5,ENST00000465471.1,ENST00000298260.4,ENST00000400018.3	chr13	21735928:21736014:21742126:21742538:21746477:21746643,	21742127	21742538	21742126	21742126	Splice_Site	C	A	.
LIHC	TCGA-DD-A119-01	RALGAPA1	ENST00000382366.3,ENST00000258840.6,ENST00000389698.3	chr14	36008840:36008896:36017713:36017744:36018315:36018440,	36017714	36017744	36017712	36017712	Splice_Site	A	G	.
LIHC	TCGA-DD-A119-01	TMEM87A	ENST00000389834.4,ENST00000562946.1,ENST00000563371.1,ENST00000569075.1,ENST00000448392.1,ENST00000568400.1	chr15	42529742:42529813:42531867:42531929:42536247:42536365,	42531868	42531929	42531866	42531866	Splice_Site	A	G	.
LIHC	TCGA-DD-A119-01	SLC28A1	ENST00000537216.1,ENST00000537624.1,ENST00000286749.3,ENST00000394573.1	chr15	85467215:85467341:85476375:85476506:85478256:85478425,	85476376	85476506	85476374	85476374	Splice_Site	A	G	.
LIHC	TCGA-DD-A119-01	BCAS3	ENST00000592393.1,ENST00000407086.3,ENST00000591147.1,ENST00000588532.1,ENST00000593004.1,ENST00000591371.1,ENST00000390652.5,ENST00000592848.1,ENST00000589222.1,ENST00000589916.1	chr17	58755252:58755275:58756813:58756901:58761342:58761397,	58756814	58756901	58756812	58756812	Splice_Site	A	G	.
LIHC	TCGA-ZP-A9D1-01	NPHP4	ENST00000378169.3,ENST00000489180.2,ENST00000378156.4,ENST00000468253.1,ENST00000478423.2	chr1	5927141:5927175:5927799:5927956:5933311:5933395,	5927800	5927956	5927958	5927958	Splice_Site	T	G	.
LIHC	TCGA-2Y-A9H6-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000582467.1,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65918955:65919106:65920662:65920705:65924470:65924717,	65920663	65920705	65920661	65920661	Splice_Site	A	G	.
LIHC	TCGA-GJ-A9DB-01	MTMR14	ENST00000296003.4	chr3	9730627:9730766:9739394:9739550:9743473:9743608,9731647:9731827:9739394:9739550:9743473:9743608,	9739395	9739550	9739394	9739394	Splice_Site	G	T	.
LIHC	TCGA-DD-AACL-01	FAM227A	ENST00000535113.1,ENST00000406767.2,ENST00000544346.1,ENST00000540952.1,ENST00000355830.6	chr22	39003393:39003481:39016216:39016296:39019176:39019284,	39016217	39016296	39016298	39016298	Splice_Site	T	A	.
LIHC	TCGA-BC-A3KF-01	IDO1	ENST00000253513.7	chr8	39775606:39775726:39776333:39776463:39780070:39780170,	39776334	39776463	39776332	39776332	Splice_Site	A	G	.
LIHC	TCGA-BC-A3KF-01	IDO1	ENST00000519154.1,ENST00000522495.1,ENST00000518237.1,ENST00000521636.1	chr8	39775606:39775726:39776333:39776452:39777618:39777633,	39776334	39776452	39776332	39776332	Splice_Site	A	G	.
LIHC	TCGA-BC-A3KF-01	PLEKHS1	ENST00000369312.4	chr10	115511440:115511520:115515017:115515164:115526169:115526258,	115515018	115515164	115515016	115515016	Splice_Site	A	G	.
LIHC	TCGA-BC-A3KF-01	MS4A6A	ENST00000412309.2,ENST00000528851.1,ENST00000530179.1,ENST00000530839.1,ENST00000420732.2,ENST00000529054.1,ENST00000323961.3	chr11	59945732:59945789:59947303:59947438:59949053:59949139,	59947304	59947438	59947440	59947440	Splice_Site	T	C	.
LIHC	TCGA-CC-A7IH-01	SIKE1	ENST00000060969.5,ENST00000510745.1,ENST00000369528.5	chr1	115316965:115316993:115318966:115319080:115321762:115321905,	115318967	115319080	115318966	115318966	Splice_Site	C	G	.
LIHC	TCGA-CC-A7IH-01	MTMR11	ENST00000482025.1,ENST00000361405.6,ENST00000369140.3,ENST00000466496.1,ENST00000406732.3,ENST00000439741.2,ENST00000495054.1	chr1	149901565:149901808:149902256:149902439:149902683:149902857,	149902257	149902439	149902441	149902441	Splice_Site	T	C	.
LIHC	TCGA-CC-A7IH-01	PARD3B	ENST00000358768.2	chr2	205990332:205990461:206036934:206037105:206041168:206041301,	206036935	206037105	206036933	206036933	Splice_Site	A	T	.
LIHC	TCGA-CC-A7IH-01	ABLIM2	ENST00000515079.1,ENST00000510277.1,ENST00000447017.2	chr4	8021939:8022030:8029485:8029584:8031382:8031503,	8029486	8029584	8029484	8029484	Splice_Site	A	T	.
LIHC	TCGA-CC-A7IH-01	KLC2	ENST00000421552.1,ENST00000461611.1,ENST00000394066.2	chr11	66026054:66026293:66029593:66029663:66030284:66030507,	66029594	66029663	66029592	66029592	Splice_Site	A	T	.
LIHC	TCGA-CC-A7IH-01	CEP192	ENST00000508539.2	chr18	13104982:13105078:13113584:13113704:13116375:13116502,	13113585	13113704	13113583	13113583	Splice_Site	A	T	.
LIHC	TCGA-CC-A7IH-01	THOP1	ENST00000589087.1,ENST00000590970.1,ENST00000591363.1,ENST00000307741.6,ENST00000587401.1,ENST00000586677.1	chr19	2808355:2808442:2810301:2810488:2810637:2810660,	2810302	2810488	2810300	2810300	Splice_Site	A	T	.
LIHC	TCGA-G3-A25U-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72189203:72189362:72189442:72189530:72192284:72192383,	72189443	72189530	72189531	72189532	Splice_Site	-	T	.
LIHC	TCGA-WX-AA47-01	CDKL4	ENST00000378803.1,ENST00000395035.3	chr2	39440540:39440613:39452979:39453101:39456505:39456729,	39452980	39453101	39452979	39452979	Splice_Site	C	-	.
LIHC	TCGA-DD-A39Y-01	EIF4E2	ENST00000409394.1,ENST00000409167.3,ENST00000409322.1	chr2	233415413:233415454:233421125:233421240:233428956:233429061,	233421126	233421240	233421124	233421124	Splice_Site	A	G	.
LIHC	TCGA-DD-A39Y-01	UBQLN1	ENST00000257468.7	chr9	86281264:86281348:86284099:86284242:86292641:86292876,86279944:86280060:86284099:86284242:86292641:86292876,	86284100	86284242	86284243	86284243	Splice_Site	C	T	.
LIHC	TCGA-DD-A39Y-01	UBQLN1	ENST00000533705.1	chr9	86279944:86280060:86281264:86284242:86292641:86292876,	86281265	86284242	86284243	86284243	Splice_Site	C	T	.
LIHC	TCGA-DD-A39Y-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123340097:123340159:123340377:123340450:123340526:123340648,	123340378	123340450	123340451	123340451	Splice_Site	G	T	.
LIHC	TCGA-DD-A39Y-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123340097:123340159:123340377:123340450:123340526:123340648,	123340378	123340450	123340452	123340452	Splice_Site	T	G	.
LIHC	TCGA-DD-A39Y-01	ACSM1	ENST00000219151.4,ENST00000523065.1,ENST00000307493.4,ENST00000520010.1,ENST00000519745.1	chr16	20693726:20693785:20696514:20696725:20702318:20702432,	20696515	20696725	20696513	20696513	Splice_Site	A	G	.
LIHC	TCGA-DD-A39Y-01	ACADVL	ENST00000350303.5	chr17	7123499:7123516:7123922:7123995:7124084:7124149,	7123923	7123995	7123922	7123922	Splice_Site	G	A	.
LIHC	TCGA-DD-A39Y-01	ANTXR2	ENST00000403729.2,ENST00000449651.1,ENST00000295465.4,ENST00000404191.1,ENST00000307333.7	chr4	80954625:80954724:80957125:80957186:80975425:80975506,	80957126	80957186	80957125	80957125	Splice_Site	C	-	.
LIHC	TCGA-DD-A39Y-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37146945:37147014:37149563:37149620:37150127:37150175,	37149564	37149620	37149563	37149563	Splice_Site	C	-	.
LIHC	TCGA-DD-A3A2-01	POLK	ENST00000509126.1,ENST00000515295.1,ENST00000380481.3,ENST00000241436.4,ENST00000511527.1,ENST00000506928.1,ENST00000510815.2,ENST00000514141.1,ENST00000352007.5,ENST00000508526.1,ENST00000505975.1,ENST00000508867.1,ENST00000503479.2,ENST00000504026.1	chr5	74869562:74869694:74872604:74872758:74877033:74877273,	74872605	74872758	74872759	74872759	Splice_Site	G	C	.
LIHC	TCGA-BC-A10U-01	TMPO	ENST00000556029.1	chr12	98931252:98931350:98938007:98938127:98938219:98938315,	98938008	98938127	98938128	98938128	Splice_Site	G	C	.
LIHC	TCGA-DD-AADQ-01	DDX11	ENST00000350437.4	chr12	31253568:31253641:31253960:31254064:31255176:31255195,	31253961	31254064	31253960	31253961	Splice_Site	-	A	.
LIHC	TCGA-DD-AADL-01	DOCK7	ENST00000340370.5,ENST00000454575.1	chr1	62943370:62943496:62953068:62953083:62954604:62954736,	62953069	62953083	62953084	62953084	Splice_Site	C	A	.
LIHC	TCGA-CC-A5UD-01	PDE4DIP	ENST00000530062.1	chr1	144854164:144854211:144854517:144854656:144855739:144855883,144852393:144852499:144854517:144854656:144855739:144855883,	144854518	144854656	144854658	144854658	Splice_Site	T	A	.
LIHC	TCGA-CC-A5UD-01	UNC5D	ENST00000404895.2,ENST00000474634.1,ENST00000453357.2,ENST00000416672.1	chr8	35541099:35541245:35542099:35542267:35544062:35544227,	35542100	35542267	35542098	35542098	Splice_Site	A	T	.
LIHC	TCGA-CC-A5UD-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712017	89712017	Splice_Site	G	T	.
LIHC	TCGA-2Y-A9GX-01	NIPAL2	ENST00000430223.2,ENST00000520545.1,ENST00000341166.3	chr8	99206955:99207050:99208169:99208233:99215335:99215424,	99208170	99208233	99208234	99208234	Splice_Site	C	G	.
LIHC	TCGA-DD-AADE-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145609279:145609473:145610219:145610480:145613012:145613306,	145610220	145610480	145610481	145610481	Splice_Site	G	A	.
LIHC	TCGA-UB-A7MD-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579591	7579591	Splice_Site	C	T	.
LIHC	TCGA-5C-A9VH-01	SHISA5	ENST00000296444.2,ENST00000415268.1,ENST00000444115.1,ENST00000417841.1,ENST00000442747.1,ENST00000417962.1	chr3	48511192:48511242:48520585:48520666:48538569:48538726,	48520586	48520666	48520585	48520585	Splice_Site	C	T	.
LIHC	TCGA-DD-AACE-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32772916:32773081:32774379:32774548:32800222:32800433,	32774380	32774548	32774378	32774378	Splice_Site	A	G	.
LIHC	TCGA-DD-A73D-01	FAAH	ENST00000468718.1,ENST00000493735.1	chr1	46860042:46860215:46867762:46867876:46870685:46870820,	46867763	46867876	46867761	46867761	Splice_Site	A	G	.
LIHC	TCGA-DD-A73D-01	MAPKAPK3	ENST00000357955.2,ENST00000446044.1,ENST00000430409.1	chr3	50655140:50655215:50677796:50677936:50679137:50679202,	50677797	50677936	50677796	50677796	Splice_Site	G	A	.
LIHC	TCGA-DD-A39X-01	ARHGAP10	ENST00000336498.3	chr4	148768301:148768373:148778703:148778805:148785996:148786107,	148778704	148778805	148778702	148778702	Splice_Site	A	G	.
LIHC	TCGA-DD-A39X-01	LPCAT1	ENST00000475622.1,ENST00000283415.3	chr5	1461954:1463950:1466863:1467005:1470940:1471039,	1466864	1467005	1467007	1467007	Splice_Site	T	C	.
LIHC	TCGA-DD-A39X-01	FAM219B	ENST00000563706.1,ENST00000565772.1,ENST00000563119.1,ENST00000569524.1,ENST00000563671.1,ENST00000357635.5,ENST00000563413.1,ENST00000563877.1	chr15	75195050:75195124:75197004:75197053:75197494:75197572,75195044:75195127:75197004:75197053:75197494:75197572,	75197005	75197053	75197055	75197055	Splice_Site	T	C	.
LIHC	TCGA-T1-A6J8-01	HDAC4	ENST00000345617.3,ENST00000493582.1	chr2	240111528:240111773:240158288:240158360:240274372:240274613,	240158289	240158360	240158361	240158361	Splice_Site	C	G	.
LIHC	TCGA-T1-A6J8-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	T	.
LIHC	TCGA-2Y-A9GT-01	VWA3B	ENST00000433678.1,ENST00000409460.1,ENST00000477737.1,ENST00000432242.1,ENST00000435344.1,ENST00000422503.2,ENST00000451075.2	chr2	98750286:98750402:98779313:98779439:98797478:98797675,	98779314	98779439	98779440	98779440	Splice_Site	G	A	.
LIHC	TCGA-ES-A2HS-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169512354	169512354	Splice_Site	T	C	.
LIHC	TCGA-ES-A2HS-01	SNED1	ENST00000342631.6,ENST00000401884.1,ENST00000310397.8,ENST00000405547.3,ENST00000401644.2,ENST00000493358.1,ENST00000431690.1	chr2	241976752:241976770:241979491:241979605:241979716:241979798,	241979492	241979605	241979607	241979607	Splice_Site	T	A	.
LIHC	TCGA-ES-A2HS-01	PDS5A	ENST00000303538.8	chr4	39847437:39847500:39850470:39850590:39851139:39851272,	39850471	39850590	39850470	39850470	Splice_Site	C	T	.
LIHC	TCGA-ES-A2HS-01	ALB	ENST00000295897.4,ENST00000509063.1,ENST00000505649.1	chr4	74272345:74272478:74275071:74275204:74276028:74276126,74274354:74274522:74275071:74275204:74276028:74276081,	74275072	74275204	74275205	74275205	Splice_Site	G	A	.
LIHC	TCGA-ES-A2HS-01	CHD1	ENST00000514344.1,ENST00000284049.3	chr5	98199111:98199290:98204198:98204339:98205457:98205586,	98204199	98204339	98204197	98204197	Splice_Site	A	T	.
LIHC	TCGA-ES-A2HS-01	HSD17B4	ENST00000513628.1,ENST00000515235.2,ENST00000442060.3,ENST00000510025.1,ENST00000509514.1,ENST00000522415.1,ENST00000256216.6,ENST00000504811.1,ENST00000414835.2,ENST00000515320.1,ENST00000509606.1	chr5	118865595:118865675:118866960:118867099:118872117:118872245,	118866961	118867099	118867101	118867101	Splice_Site	T	A	.
LIHC	TCGA-ES-A2HS-01	ALDH3B1	ENST00000530046.1,ENST00000529232.1,ENST00000526609.1,ENST00000342456.6,ENST00000007633.8,ENST00000316367.6,ENST00000433100.1,ENST00000525518.1,ENST00000539229.1,ENST00000434449.1	chr11	67786638:67786724:67787183:67787265:67788953:67788991,	67787184	67787265	67787182	67787182	Splice_Site	A	G	.
LIHC	TCGA-ES-A2HS-01	CPT1A	ENST00000565318.1,ENST00000569129.1,ENST00000376618.2,ENST00000539743.1,ENST00000265641.5	chr11	68575034:68575106:68579904:68580044:68582801:68582955,	68579905	68580044	68580046	68580046	Splice_Site	T	A	.
LIHC	TCGA-ES-A2HS-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15296297:15296490:15297688:15297799:15297915:15298149,	15297689	15297799	15297800	15297800	Splice_Site	C	A	.
LIHC	TCGA-LG-A6GG-01	IWS1	ENST00000295321.4	chr2	128247407:128247519:128249546:128249664:128250856:128250986,	128249547	128249664	128249666	128249666	Splice_Site	T	A	.
LIHC	TCGA-LG-A6GG-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89326705:89326765:89329675:89329769:89334228:89334418,	89329676	89329769	89329771	89329771	Splice_Site	T	C	.
LIHC	TCGA-LG-A6GG-01	SLC17A3	ENST00000397060.4,ENST00000361703.6,ENST00000360657.3	chr6	25850275:25850405:25850686:25850848:25850986:25851105,	25850687	25850848	25850686	25850686	Splice_Site	C	T	.
LIHC	TCGA-DD-AAW1-01	SPA17	ENST00000227135.2,ENST00000524614.1,ENST00000532692.1	chr11	124545209:124545314:124551284:124551355:124561591:124561678,	124551285	124551355	124551357	124551357	Splice_Site	T	C	.
LIHC	TCGA-DD-AAW1-01	MPP1	ENST00000369531.1	chrX	154020043:154020122:154020467:154020560:154033546:154033672,	154020468	154020560	154020561	154020561	Splice_Site	C	T	.
LIHC	TCGA-DD-AAW1-01	MPP1	ENST00000471821.1,ENST00000393531.1	chrX	154020043:154020122:154020416:154020560:154033546:154033672,	154020417	154020560	154020561	154020561	Splice_Site	C	T	.
LIHC	TCGA-DD-A116-01	SMG5	ENST00000361813.5	chr1	156219823:156220461:156220648:156220787:156221193:156221268,	156220649	156220787	156220788	156220788	Splice_Site	C	A	.
LIHC	TCGA-DD-A116-01	ANAPC1	ENST00000427997.1,ENST00000341068.3	chr2	112536251:112536347:112537875:112537962:112539945:112540084,	112537876	112537962	112537964	112537965	Splice_Site	-	A	.
LIHC	TCGA-MI-A75G-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000507620.1	chr3	142215975:142216034:142217438:142217616:142218468:142218560,	142217439	142217616	142217617	142217617	Splice_Site	C	A	.
LIHC	TCGA-DD-AACQ-01	PARD3B	ENST00000358768.2,ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205829874:205830046:205912303:205912413:205969149:205969238,	205912304	205912413	205912302	205912302	Splice_Site	A	T	.
LIHC	TCGA-DD-AACQ-01	DNAH8	ENST00000327475.6,ENST00000373278.4,ENST00000449981.2	chr6	38691112:38691247:38697677:38697762:38702249:38702290,	38697678	38697762	38697676	38697676	Splice_Site	A	T	.
LIHC	TCGA-DD-AACQ-01	ARHGAP42	ENST00000524892.2,ENST00000298815.8	chr11	100847545:100847702:100849717:100849780:100858243:100858323,	100849718	100849780	100849716	100849716	Splice_Site	A	T	.
LIHC	TCGA-DD-AACQ-01	ZNF226	ENST00000589160.1,ENST00000454662.2,ENST00000590578.1,ENST00000300823.6,ENST00000588883.1,ENST00000337433.5,ENST00000586914.1,ENST00000588795.1,ENST00000588742.1,ENST00000413984.2,ENST00000588127.1	chr19	44669909:44669960:44674187:44674248:44676240:44676307,	44674188	44674248	44674186	44674186	Splice_Site	A	T	.
LIHC	TCGA-ZP-A9D4-01	RB1CC1	ENST00000435644.2,ENST00000539297.1,ENST00000025008.5	chr8	53571432:53571536:53573155:53573217:53573485:53573567,	53573156	53573217	53573155	53573155	Splice_Site	C	T	.
LIHC	TCGA-ED-A7XP-01	CASP4	ENST00000533730.1,ENST00000393150.3,ENST00000444739.2	chr11	104817809:104817919:104819259:104819403:104820269:104820504,	104819260	104819403	104819259	104819259	Splice_Site	C	A	.
LIHC	TCGA-DD-A118-01	REC8	ENST00000557979.1,ENST00000311457.3,ENST00000559919.1	chr14	24646349:24646428:24646558:24646589:24646670:24646747,	24646559	24646589	24646590	24646590	Splice_Site	G	T	.
LIHC	TCGA-3K-AAZ8-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171238525:171238622:171239582:171239699:171240219:171240324,	171239583	171239699	171239700	171239700	Splice_Site	G	A	.
LIHC	TCGA-CC-A7IJ-01	DNAJB6	ENST00000486083.2,ENST00000262177.4,ENST00000453383.1,ENST00000429029.2,ENST00000412557.1,ENST00000488001.1,ENST00000459889.1,ENST00000437030.1,ENST00000441291.1,ENST00000417758.1,ENST00000441561.1,ENST00000443280.1	chr7	157151240:157151331:157155854:157155964:157159195:157159219,	157155855	157155964	157155965	157155965	Splice_Site	G	T	.
LIHC	TCGA-DD-AAC8-01	ADAM23	ENST00000374415.3,ENST00000264377.3,ENST00000374416.1	chr2	207435463:207435535:207436450:207436540:207437838:207437919,	207436451	207436540	207436449	207436449	Splice_Site	A	T	.
LIHC	TCGA-DD-AAC8-01	XXYLT1	ENST00000310380.6,ENST00000429994.1	chr3	194790766:194790840:194877177:194877310:194947437:194947585,	194877178	194877310	194877312	194877312	Splice_Site	T	A	.
LIHC	TCGA-DD-AAC8-01	RGS12	ENST00000509746.1,ENST00000513991.1,ENST00000538395.1,ENST00000507246.1,ENST00000344733.5,ENST00000515521.1,ENST00000511709.1,ENST00000336727.3,ENST00000504194.1,ENST00000382788.3,ENST00000306648.7,ENST00000508158.1,ENST00000507041.1,ENST00000338806.4	chr4	3424279:3424297:3424631:3424705:3425241:3425368,	3424632	3424705	3424630	3424630	Splice_Site	A	T	.
LIHC	TCGA-DD-AAC8-01	ATP6V1B2	ENST00000276390.2,ENST00000523478.1,ENST00000519667.1,ENST00000520830.1,ENST00000523482.1	chr8	20067856:20067950:20068079:20068157:20068687:20068765,	20068080	20068157	20068078	20068078	Splice_Site	A	T	.
LIHC	TCGA-DD-AAC8-01	BRD3	ENST00000303407.7	chr9	136901153:136901446:136905155:136905391:136906881:136906916,	136905156	136905391	136905393	136905393	Splice_Site	T	A	.
LIHC	TCGA-DD-AAC8-01	EXT2	ENST00000358681.4,ENST00000343631.3,ENST00000528159.1,ENST00000533608.1,ENST00000395673.3	chr11	44228414:44228509:44253902:44254046:44255664:44255793,	44253903	44254046	44253901	44253901	Splice_Site	A	T	.
LIHC	TCGA-DD-AAC8-01	MVP	ENST00000357402.5,ENST00000395353.1	chr16	29845506:29845758:29847024:29847119:29848042:29848279,29845255:29845387:29847024:29847119:29848042:29848279,	29847025	29847119	29847023	29847023	Splice_Site	A	T	.
LIHC	TCGA-DD-AAC8-01	JAM2	ENST00000400532.1,ENST00000312957.5,ENST00000480456.1	chr21	27056194:27056260:27062177:27062285:27066067:27066220,	27062178	27062285	27062287	27062287	Splice_Site	T	C	.
LIHC	TCGA-DD-AAC8-01	PICK1	ENST00000466374.1,ENST00000356976.3,ENST00000424694.1,ENST00000484021.1,ENST00000468288.1,ENST00000435166.1,ENST00000437453.1,ENST00000404072.3	chr22	38455240:38455352:38461008:38461137:38463710:38463777,	38461009	38461137	38461007	38461007	Splice_Site	A	C	.
LIHC	TCGA-DD-A113-01	MTMR14	ENST00000430020.1	chr3	9695304:9695453:9703950:9704059:9710402:9710436,9695304:9695453:9703950:9704059:9711115:9711176,	9703951	9704059	9703950	9703950	Splice_Site	G	A	.
LIHC	TCGA-DD-A113-01	MTMR14	ENST00000416864.1	chr3	9695304:9695453:9703950:9703969:9711115:9711176,	9703951	9703969	9703950	9703950	Splice_Site	G	A	.
LIHC	TCGA-DD-AADF-01	TTC3	ENST00000428693.1	chr21	38563634:38563725:38567975:38568337:38569870:38569997,	38567976	38568337	38567975	38567975	Splice_Site	G	A	.
LIHC	TCGA-CC-A7IE-01	FAXC	ENST00000389677.5,ENST00000480148.1	chr6	99771358:99771543:99781226:99781423:99790773:99790810,	99781227	99781423	99781226	99781226	Splice_Site	C	A	.
LIHC	TCGA-CC-A7IE-01	ARID2	ENST00000479608.1,ENST00000334344.6,ENST00000444670.1,ENST00000422737.1,ENST00000457135.1	chr12	46246077:46246679:46254583:46254732:46285562:46285701,	46254584	46254732	46254582	46254582	Splice_Site	A	G	.
LIHC	TCGA-CC-A7IK-01	FAM13B	ENST00000508403.1	chr5	137354167:137354203:137354643:137354835:137356719:137356886,137354167:137354203:137354643:137354835:137355569:137355666,	137354644	137354835	137354837	137354837	Splice_Site	T	C	.
LIHC	TCGA-CC-A7IK-01	CA1	ENST00000517590.1,ENST00000517618.1,ENST00000523858.1,ENST00000521846.1,ENST00000523022.1,ENST00000523953.1,ENST00000542576.1,ENST00000522814.1,ENST00000522579.1,ENST00000256119.5,ENST00000431316.1,ENST00000432364.2,ENST00000522662.1	chr8	86249230:86249292:86250480:86250678:86253827:86253888,	86250481	86250678	86250479	86250479	Splice_Site	A	T	.
LIHC	TCGA-CC-A7IK-01	PPP6C	ENST00000373547.4,ENST00000456642.1,ENST00000451402.1	chr9	127916232:127916264:127920519:127920661:127933363:127933459,127916232:127916264:127920519:127920661:127923119:127923185,	127920520	127920661	127920663	127920663	Splice_Site	T	A	.
LIHC	TCGA-CC-A7IK-01	AMFR	ENST00000290649.5,ENST00000567738.1	chr16	56423096:56423287:56435644:56435755:56436896:56437015,	56435645	56435755	56435757	56435757	Splice_Site	T	A	.
LIHC	TCGA-DD-AADO-01	TEX10	ENST00000429235.1,ENST00000535814.1,ENST00000374902.4	chr9	103091467:103091557:103092212:103092451:103102538:103102651,	103092213	103092451	103092453	103092453	Splice_Site	T	C	.
LIHC	TCGA-RC-A6M6-01	TFEB	ENST00000416140.1,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000419396.1,ENST00000419574.1,ENST00000394283.1,ENST00000343317.6,ENST00000373033.1	chr6	41657468:41657549:41658400:41658655:41658738:41658780,	41658401	41658655	41658400	41658400	Splice_Site	C	T	.
LIHC	TCGA-DD-AACH-01	HLA-DPB1	ENST00000418931.2	chr6	33053557:33053666:33053995:33054019:33054315:33054978,	33053996	33054019	33053995	33053995	Splice_Site	G	T	.
LIHC	TCGA-DD-AACH-01	LMBR1	ENST00000434503.1,ENST00000448926.1,ENST00000540390.1,ENST00000359422.4,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156554827:156554892:156555801:156555870:156556362:156556489,	156555802	156555870	156555801	156555801	Splice_Site	C	A	.
LIHC	TCGA-G3-AAUZ-01	RMND1	ENST00000444024.1,ENST00000367303.4,ENST00000336451.3	chr6	151744659:151744766:151748616:151748717:151751272:151751312,	151748617	151748717	151748616	151748616	Splice_Site	C	T	.
LIHC	TCGA-G3-AAUZ-01	CNPY3	ENST00000372836.4,ENST00000394142.3	chr6	42905454:42905577:42905827:42905945:42906305:42907007,	42905828	42905945	42905826	42905827	Splice_Site	AG	-	.
LIHC	TCGA-FV-A496-01	ZFYVE9	ENST00000371591.1,ENST00000287727.3,ENST00000357206.2	chr1	52759124:52759349:52761566:52761649:52769492:52769597,	52761567	52761649	52761566	52761566	Splice_Site	G	T	.
LIHC	TCGA-DD-A3A4-01	C1orf94	ENST00000373374.3,ENST00000488417.1	chr1	34666372:34666633:34667684:34667860:34673757:34673835,	34667685	34667860	34667861	34667861	Splice_Site	G	T	.
LIHC	TCGA-ED-A459-01	LMAN1L	ENST00000565585.1	chr15	75114982:75115050:75115899:75116819:75117813:75118095,	75115900	75116819	75115899	75115899	Splice_Site	G	T	.
LIHC	TCGA-ED-A459-01	LMAN1L	ENST00000379709.3,ENST00000309664.5	chr15	75114982:75115050:75115899:75116023:75116691:75116819,	75115900	75116023	75115899	75115899	Splice_Site	G	T	.
LIHC	TCGA-DD-AAVX-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000417294.1	chr2	102476197:102476326:102477286:102477448:102480282:102480513,102476197:102476326:102477286:102477448:102481391:102481465,	102477287	102477448	102477449	102477449	Splice_Site	G	T	.
LIHC	TCGA-DD-AADM-01	TTYH1	ENST00000376530.3,ENST00000492920.1,ENST00000476863.1,ENST00000487134.1	chr19	54946806:54946864:54947007:54947053:54947267:54947338,54946806:54946864:54947007:54947053:54947270:54947351,	54947008	54947053	54947007	54947007	Splice_Site	G	A	.
LIHC	TCGA-FV-A3R2-01	FIG4	ENST00000230124.3	chr6	110056352:110056501:110059527:110059656:110062646:110062747,	110059528	110059656	110059526	110059526	Splice_Site	A	G	.
LIHC	TCGA-FV-A3R2-01	AXIN1	ENST00000354866.3,ENST00000481769.1,ENST00000461023.1,ENST00000262320.3	chr16	354303:354441:359972:360069:364542:364683,	359973	360069	360070	360070	Splice_Site	C	A	.
LIHC	TCGA-BC-A3KG-01	CDC123	ENST00000281141.4,ENST00000440613.1	chr10	12279142:12279265:12280455:12280484:12288147:12288276,	12280456	12280484	12280454	12280454	Splice_Site	A	G	.
LIHC	TCGA-BC-A3KG-01	CARD14	ENST00000570421.1,ENST00000573754.1,ENST00000344227.2,ENST00000573882.1,ENST00000392434.2,ENST00000571450.1,ENST00000571861.1	chr17	78162175:78162343:78163551:78163671:78164572:78164698,	78163552	78163671	78163550	78163550	Splice_Site	A	G	.
LIHC	TCGA-BC-A3KG-01	LDLRAD4	ENST00000585931.1,ENST00000361205.4,ENST00000587757.1,ENST00000586207.1,ENST00000361303.3,ENST00000359446.5	chr18	13621115:13621270:13643357:13643411:13645125:13645204,	13643358	13643411	13643356	13643356	Splice_Site	A	G	.
LIHC	TCGA-CC-5258-01	KYNU	ENST00000264170.4,ENST00000375773.2,ENST00000409512.1	chr2	143715209:143715284:143718192:143718339:143742652:143742751,	143718193	143718339	143718192	143718192	Splice_Site	G	A	.
LIHC	TCGA-CC-5258-01	PCBD2	ENST00000512783.1,ENST00000504352.1	chr5	134240862:134240913:134246024:134246156:134294729:134294785,	134246025	134246156	134246024	134246024	Splice_Site	G	C	.
LIHC	TCGA-CC-5258-01	PAGE2	ENST00000374968.4	chrX	55116934:55117043:55117764:55117890:55119147:55119275,	55117765	55117890	55117891	55117891	Splice_Site	G	A	.
LIHC	TCGA-DD-AADP-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370098	240370098	Splice_Site	G	A	.
LIHC	TCGA-ES-A2HT-01	RPS6KA2	ENST00000366863.2	chr6	166944719:166944801:166952155:166952272:167184350:167184401,166944719:166944801:166952155:166952272:167040408:167040725,	166952156	166952272	166952273	166952273	Splice_Site	C	A	.
LIHC	TCGA-ES-A2HT-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3	chr9	119802097:119802244:119858322:119858430:119903604:119903754,	119858323	119858430	119858432	119858432	Splice_Site	T	A	.
LIHC	TCGA-ES-A2HT-01	ATAD1	ENST00000328142.3,ENST00000541004.1,ENST00000308448.7	chr10	89527429:89527480:89530708:89530798:89536077:89536184,	89530709	89530798	89530707	89530707	Splice_Site	A	T	.
LIHC	TCGA-ES-A2HT-01	FBXW4	ENST00000331272.7	chr10	103371413:103371526:103372093:103372234:103384501:103384567,	103372094	103372234	103372236	103372236	Splice_Site	T	C	.
LIHC	TCGA-ES-A2HT-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95918455:95918564:95922582:95922778:95926604:95928102,	95922583	95922778	95922582	95922582	Splice_Site	C	T	.
LIHC	TCGA-ES-A2HT-01	GAS2L3	ENST00000547754.1,ENST00000539410.1,ENST00000266754.5,ENST00000537247.1	chr12	101012226:101012365:101016052:101016160:101017339:101018668,	101016053	101016160	101016162	101016162	Splice_Site	T	A	.
LIHC	TCGA-ES-A2HT-01	CUX2	ENST00000397643.3,ENST00000261726.6,ENST00000551604.2	chr12	111652104:111652114:111655693:111655741:111701564:111701643,	111655694	111655741	111655742	111655742	Splice_Site	G	A	.
LIHC	TCGA-ES-A2HT-01	MAPT	ENST00000571311.1	chr17	44039703:44039836:44049224:44049311:44055740:44055791,44046530:44046665:44049224:44049311:44055740:44055791,	44049225	44049311	44049223	44049223	Splice_Site	A	G	.
LIHC	TCGA-ES-A2HT-01	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43795775	43795775	Splice_Site	A	G	.
LIHC	TCGA-ES-A2HT-01	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438138	9438138	Splice_Site	T	A	.
LIHC	TCGA-ES-A2HT-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3,ENST00000488166.1	chr21	35138178:35138316:35140016:35140132:35144364:35144586,	35140017	35140132	35140133	35140133	Splice_Site	G	T	.
LIHC	TCGA-UB-A7MB-01	COL9A2	ENST00000417105.1,ENST00000488463.1,ENST00000372748.3,ENST00000496215.1	chr1	40777342:40777387:40777730:40777784:40778127:40778151,	40777731	40777784	40777786	40777786	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	CLK2	ENST00000368361.4,ENST00000355560.4,ENST00000361168.5,ENST00000476983.1,ENST00000536801.1	chr1	155233740:155233831:155234011:155234091:155234258:155234341,	155234012	155234091	155234093	155234093	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15676541:15676675:15679346:15679480:15691616:15691660,	15679347	15679480	15679482	15679482	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	CKAP2L	ENST00000302450.6,ENST00000497357.1,ENST00000435431.1,ENST00000541405.1	chr2	113514770:113514791:113518289:113518341:113520079:113520146,	113518290	113518341	113518343	113518343	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	TMPRSS11A	ENST00000508048.1,ENST00000396188.2,ENST00000334830.7	chr4	68788472:68788644:68789845:68789884:68795597:68795712,	68789846	68789884	68789885	68789885	Splice_Site	C	A	.
LIHC	TCGA-UB-A7MB-01	FLT4	ENST00000261937.6,ENST00000502649.1,ENST00000393347.3,ENST00000502603.1	chr5	180035967:180036053:180036904:180037025:180038330:180038479,	180036905	180037025	180037027	180037027	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	CPVL	ENST00000432534.1	chr7	29070210:29070375:29103676:29103850:29105638:29105737,29070210:29070375:29103676:29103850:29111388:29111461,	29103677	29103850	29103852	29103852	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48556320:48556477:48559636:48559890:48563843:48564036,	48559637	48559890	48559635	48559635	Splice_Site	A	T	.
LIHC	TCGA-UB-A7MB-01	KDM4C	ENST00000536108.1	chr9	7015852:7015929:7046861:7046917:7103684:7103870,	7046862	7046917	7046860	7046860	Splice_Site	A	T	.
LIHC	TCGA-UB-A7MB-01	SNAPC3	ENST00000490969.1,ENST00000467062.1,ENST00000380821.3	chr9	15444599:15444704:15447092:15447242:15451317:15451400,	15447093	15447242	15447091	15447091	Splice_Site	A	T	.
LIHC	TCGA-UB-A7MB-01	UBAP2	ENST00000462799.1,ENST00000379239.4	chr9	33948379:33948585:33953282:33953472:33956076:33956144,33948379:33948585:33953282:33953472:33960823:33960876,	33953283	33953472	33953474	33953474	Splice_Site	T	C	.
LIHC	TCGA-UB-A7MB-01	MMP10	ENST00000279441.4	chr11	102641233:102641624:102642742:102642846:102643577:102643737,	102642743	102642846	102642848	102642848	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	ASIC1	ENST00000552438.1,ENST00000453327.3,ENST00000552633.2,ENST00000447966.2,ENST00000550558.1	chr12	50474280:50474372:50474884:50474964:50475042:50475147,	50474885	50474964	50474966	50474966	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	YEATS4	ENST00000247843.2,ENST00000552955.1,ENST00000549685.1	chr12	69759412:69759479:69759569:69759664:69764485:69764578,	69759570	69759664	69759665	69759665	Splice_Site	G	T	.
LIHC	TCGA-UB-A7MB-01	PTPRQ	ENST00000266688.5	chr12	81028723:81028852:81042675:81042702:81043366:81043448,	81042676	81042702	81042674	81042674	Splice_Site	A	T	.
LIHC	TCGA-UB-A7MB-01	SUGT1	ENST00000310528.8,ENST00000535397.1,ENST00000343788.6	chr13	53227000:53227093:53227180:53227238:53231666:53231754,	53227181	53227238	53227239	53227239	Splice_Site	G	A	.
LIHC	TCGA-UB-A7MB-01	FAM214A	ENST00000399202.4,ENST00000570204.1,ENST00000546305.2,ENST00000261844.7	chr15	52877101:52877141:52879347:52879416:52885774:52885933,	52879348	52879416	52879347	52879347	Splice_Site	C	T	.
LIHC	TCGA-UB-A7MB-01	RPL4	ENST00000564439.1,ENST00000566039.1,ENST00000566624.1,ENST00000566622.1,ENST00000568588.1,ENST00000307961.6,ENST00000569438.1,ENST00000569696.1	chr15	66795039:66795088:66795395:66795502:66795695:66795867,	66795396	66795502	66795504	66795504	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	RPL4	ENST00000567229.1	chr15	66794125:66794250:66794949:66795502:66795695:66795867,	66794950	66795502	66795504	66795504	Splice_Site	T	A	.
LIHC	TCGA-UB-A7MB-01	ABHD2	ENST00000562073.1,ENST00000569411.1,ENST00000565973.1,ENST00000352732.5,ENST00000355100.3	chr15	89659734:89659752:89694907:89695083:89698597:89698621,	89694908	89695083	89694906	89694906	Splice_Site	A	G	.
LIHC	TCGA-UB-A7MB-01	PHKG2	ENST00000328273.7,ENST00000565897.1,ENST00000563913.1,ENST00000565924.1,ENST00000563588.1,ENST00000563607.1,ENST00000564838.1,ENST00000424889.3	chr16	30762869:30762924:30764552:30764618:30764714:30764874,	30764553	30764618	30764551	30764551	Splice_Site	A	T	.
LIHC	TCGA-UB-A7MB-01	RBL2	ENST00000544405.2,ENST00000379935.4,ENST00000544545.1,ENST00000262133.6	chr16	53496463:53496567:53498137:53498275:53499349:53499514,	53498138	53498275	53498136	53498136	Splice_Site	A	G	.
LIHC	TCGA-UB-A7MB-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15299045:15299159:15299799:15299985:15300083:15300239,	15299800	15299985	15299987	15299987	Splice_Site	T	A	.
LIHC	TCGA-G3-A7M5-01	KIAA0513	ENST00000562580.1,ENST00000538274.1	chr16	85112530:85112609:85114920:85114998:85120249:85120330,	85114921	85114998	85114999	85114999	Splice_Site	G	A	.
LIHC	TCGA-G3-A7M5-01	DNASE1L1	ENST00000309585.5	chrX	153633829:153633996:153637447:153637532:153640227:153640420,	153637448	153637532	153637534	153637534	Splice_Site	T	A	.
LIHC	TCGA-DD-AADR-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46911138:46911228:46912448:46912478:46912600:46912627,	46912449	46912478	46912479	46912479	Splice_Site	G	A	.
LIHC	TCGA-DD-AAE7-01	SLC2A5	ENST00000535586.1,ENST00000377424.4,ENST00000536305.1	chr1	9097955:9098083:9098489:9098565:9098886:9098988,	9098490	9098565	9098489	9098489	Splice_Site	C	T	.
LIHC	TCGA-DD-AAE7-01	CLEC12A	ENST00000355690.4,ENST00000304361.4,ENST00000396507.3,ENST00000434319.2	chr12	10124234:10124286:10131564:10131663:10131934:10132123,	10131565	10131663	10131563	10131563	Splice_Site	A	T	.
LIHC	TCGA-FV-A3I1-01	ITGB3BP	ENST00000462285.1	chr1	63955773:63955889:63974198:63974241:63988799:63988851,63920575:63920639:63974198:63974241:63988799:63988851,	63974199	63974241	63974243	63974243	Splice_Site	T	C	.
LIHC	TCGA-DD-AAEK-01	R3HCC1L	ENST00000298999.3,ENST00000370584.3	chr10	99967857:99969656:99991268:99991444:99994202:99994273,	99991269	99991444	99991445	99991445	Splice_Site	G	A	.
LIHC	TCGA-DD-AACU-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220499992:220500218:220500394:220500613:220501023:220501172,	220500395	220500613	220500393	220500393	Splice_Site	A	T	.
LIHC	TCGA-CC-A3MA-01	UBE2D1	ENST00000373910.4	chr10	60121254:60121286:60123368:60123446:60124530:60124636,	60123369	60123446	60123367	60123367	Splice_Site	A	G	.
LIHC	TCGA-XR-A8TF-01	ELP3	ENST00000521570.1,ENST00000256398.8,ENST00000521099.1,ENST00000520288.1,ENST00000520270.1,ENST00000521938.1,ENST00000521015.1,ENST00000523760.1	chr8	27954735:27954835:27957344:27957483:27964229:27964300,	27957345	27957483	27957343	27957343	Splice_Site	A	T	.
LIHC	TCGA-XR-A8TF-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35399157:35399281:35399388:35399445:35399645:35399726,	35399389	35399445	35399446	35399446	Splice_Site	G	A	.
LIHC	TCGA-XR-A8TF-01	TLE1	ENST00000376463.1,ENST00000376472.1,ENST00000376499.3,ENST00000418319.1	chr9	84267128:84267203:84268888:84268951:84300590:84300635,	84268889	84268951	84268953	84268953	Splice_Site	T	A	.
LIHC	TCGA-NI-A4U2-01	NUP98	ENST00000524563.1	chr11	3704429:3704671:3707293:3707424:3712576:3712719,	3707294	3707424	3707425	3707425	Splice_Site	C	G	.
LIHC	TCGA-NI-A4U2-01	NUP98	ENST00000324932.7,ENST00000429801.1	chr11	3704429:3704671:3707202:3707424:3712576:3712719,	3707203	3707424	3707425	3707425	Splice_Site	C	G	.
LIHC	TCGA-NI-A4U2-01	LRRIQ1	ENST00000393217.2	chr12	85547789:85547872:85554390:85554492:85623294:85623427,	85554391	85554492	85554390	85554390	Splice_Site	G	C	.
LIHC	TCGA-BC-A112-01	PTPN12	ENST00000248594.6,ENST00000435495.2,ENST00000415482.2	chr7	77240264:77240363:77247796:77247882:77256021:77256992,	77247797	77247882	77247882	77247883	Splice_Site	-	GT	p.I342_splice
LIHC	TCGA-CC-A5UD-01	P4HA1	ENST00000373008.2,ENST00000440381.1,ENST00000263556.3	chr10	74790028:74790128:74803644:74803715:74806682:74806859,	74803645	74803715	74803644	74803660	Splice_Site	CCTCTTAGATACTCTGT	-	p.378_splice
LIHC	TCGA-DD-A4NK-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000509063.1,ENST00000441319.1	chr4	74272367:74272478:74274310:74274522:74275071:74275204,	74274311	74274522	74274521	74274524	Splice_Site	AAGT	-	p.161_splice
LIHC	TCGA-ED-A4XI-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40940698:40940815:40945609:40945747:40946631:40946686,	40945610	40945747	40945608	40945615	Splice_Site	AGGTATAT	-	p.719_splice
LIHC	TCGA-G3-A25S-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283386	74283387	Splice_Site	TG	-	p.476_splice
LIHC	TCGA-K7-A6G5-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283386	74283387	Splice_Site	TG	-	p.476_splice
LIHC	TCGA-RC-A6M6-01	PPIL2	ENST00000406385.1,ENST00000484439.1,ENST00000492445.2,ENST00000335025.8,ENST00000458567.1,ENST00000398831.3,ENST00000417788.1,ENST00000412327.1	chr22	22024854:22024900:22025285:22025348:22026618:22026670,	22025286	22025348	22025285	22025298	Splice_Site	GTCTCTCTCTGCAG	-	p.SLSLQ43_splice
LUAD	TCGA-55-7913-01	SCN5A	ENST00000443581.1,ENST00000455624.2,ENST00000423572.2	chr3	38618151:38618272:38620824:38620983:38622421:38622862,	38620825	38620983	38620985	38620985	Splice_Site	T	C	p.Q1077_splice
LUAD	TCGA-64-5781-01	SF3B2	ENST00000533595.1,ENST00000524627.1	chr11	65822763:65822786:65823008:65823056:65824308:65824426,	65823009	65823056	65823007	65823007	Splice_Site	A	C	p.Q167_splice
LUAD	TCGA-05-5429-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132181310:132181367:132182539:132182661:132184838:132184914,	132182540	132182661	132182659	132182662	Splice_Site	TAGG	-	p.K630_splice
LUAD	TCGA-50-5051-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2	chr20	9440281:9440457:9449217:9449319:9453436:9453494,	9449218	9449319	9449216	9449221	Splice_Site	AGGGAA	-	p.1071_splice
LUAD	TCGA-50-6597-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411551:116411708:116411902:116412043:116414934:116415126,	116411903	116412043	116412042	116412045	Splice_Site	AGGT	-	p.E1009_splice
LUAD	TCGA-55-6984-01	EPC2	ENST00000258484.6,ENST00000457184.1	chr2	149402608:149402739:149447782:149447942:149501190:149501336,	149447783	149447942	149447935	149447943	Splice_Site	TATTCAGCG	-	p.Q102_splice
LUAD	TCGA-05-4249-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225371574:225371720:225376070:225376299:225378240:225378355,	225376071	225376299	225376300	225376300	Splice_Site	C	T	p.M219_splice
LUAD	TCGA-05-4382-01	FRRS1	ENST00000414213.1,ENST00000287474.5	chr1	100181141:100181228:100182965:100183081:100185089:100185203,	100182966	100183081	100183082	100183082	Splice_Site	C	A	p.G374_splice
LUAD	TCGA-05-4382-01	TMEM135	ENST00000305494.5,ENST00000529023.1,ENST00000531800.1	chr11	86782564:86782657:86802403:86802437:86947679:86947726,86782564:86782657:86802403:86802437:86868382:86868448,	86802404	86802437	86802403	86802403	Splice_Site	G	T	p.R121_splice
LUAD	TCGA-05-4382-01	LMBR1L	ENST00000547382.1,ENST00000550867.1,ENST00000547813.1,ENST00000552577.1,ENST00000417750.1,ENST00000553040.1,ENST00000551272.1,ENST00000267102.8,ENST00000547670.1,ENST00000395141.4	chr12	49491482:49491522:49491726:49491888:49494170:49494237,	49491727	49491888	49491726	49491726	Splice_Site	C	A	p.G468_splice
LUAD	TCGA-05-4382-01	VPS13C	ENST00000261517.5,ENST00000395896.4	chr15	62315978:62316044:62320556:62320619:62325639:62325741,	62320557	62320619	62320619	62320620	Splice_Site	CC	AA	p.G129_splice
LUAD	TCGA-05-4382-01	WDR61	ENST00000560610.1	chr15	78582292:78582441:78584957:78585227:78585508:78585614,	78584958	78585227	78584957	78584957	Splice_Site	C	A	p.V107_splice
LUAD	TCGA-05-4382-01	WDR61	ENST00000560569.1,ENST00000559848.1,ENST00000558311.1,ENST00000267973.2	chr15	78582292:78582441:78584957:78585130:78585508:78585614,	78584958	78585130	78584957	78584957	Splice_Site	C	A	p.V107_splice
LUAD	TCGA-05-4382-01	WDR59	ENST00000536050.1,ENST00000262144.6	chr16	74972148:74972164:74976635:74976724:74982416:74982454,	74976636	74976724	74976635	74976635	Splice_Site	C	T	p.R178_splice
LUAD	TCGA-05-4382-01	HCST	ENST00000246551.4	chr19	36394252:36394318:36394673:36394805:36395021:36395279,	36394674	36394805	36394806	36394806	Splice_Site	G	T	p.E81_splice
LUAD	TCGA-05-4382-01	CAPN13	ENST00000534090.2,ENST00000458085.2,ENST00000295055.8	chr2	30973968:30974117:30975918:30976064:30977155:30977230,	30975919	30976064	30975918	30975918	Splice_Site	C	A	p.G363_splice
LUAD	TCGA-05-4382-01	ELMOD3	ENST00000462891.3,ENST00000444108.3,ENST00000410106.1,ENST00000409890.2,ENST00000414593.1,ENST00000409013.3,ENST00000409344.3,ENST00000490508.1,ENST00000488150.1,ENST00000418268.1,ENST00000446464.3,ENST00000423095.3,ENST00000393852.4,ENST00000428955.2,ENST00000409331.2,ENST00000315658.7	chr2	85589355:85589383:85590219:85590289:85595808:85595863,	85590220	85590289	85590289	85590290	Splice_Site	GG	TT	p.V67_splice
LUAD	TCGA-05-4382-01	ATF2	ENST00000421438.1,ENST00000538946.1,ENST00000417080.1,ENST00000428760.1,ENST00000409833.1,ENST00000264110.2,ENST00000429579.1,ENST00000392544.1,ENST00000487334.2,ENST00000426833.3,ENST00000409437.1,ENST00000435004.2	chr2	175982978:175983097:175986171:175986268:175994865:175994933,	175986172	175986268	175986270	175986270	Splice_Site	T	A	p.R35_splice
LUAD	TCGA-05-4382-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	207007409:207007555:207008741:207008856:207009615:207009750,	207008742	207008856	207008741	207008742	Splice_Site	CC	AA	p.M329_splice
LUAD	TCGA-05-4382-01	MARCH6	ENST00000511802.1,ENST00000449913.2,ENST00000510792.1,ENST00000503788.1,ENST00000274140.5	chr5	10417381:10417516:10423846:10423936:10426501:10426634,	10423847	10423936	10423937	10423937	Splice_Site	G	T	p.Q791_splice
LUAD	TCGA-05-4382-01	UTRN	ENST00000367545.3	chr6	144757070:144757274:144758700:144758882:144759880:144760031,	144758701	144758882	144758883	144758883	Splice_Site	G	T	p.R414_splice
LUAD	TCGA-05-4382-01	LRRC6	ENST00000518642.1,ENST00000250173.1,ENST00000519595.1	chr8	133637557:133637700:133644985:133645209:133650180:133650353,	133644986	133645209	133644985	133644985	Splice_Site	C	A	p.L218_splice
LUAD	TCGA-05-4384-01	MS4A15	ENST00000429322.2	chr11	60524480:60524531:60531178:60531431:60535005:60535128,60524480:60524531:60531178:60531431:60535039:60535128,	60531179	60531431	60531432	60531432	Splice_Site	G	T	p.G75_splice
LUAD	TCGA-05-4384-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000578630.1,ENST00000269571.5,ENST00000582818.1,ENST00000584601.1,ENST00000583038.1,ENST00000540147.1	chr17	37873681:37873733:37876039:37876087:37879571:37879710,	37876040	37876087	37876038	37876038	Splice_Site	A	T	p.S633_splice
LUAD	TCGA-05-4389-01	TARS2	ENST00000438568.2,ENST00000369064.3,ENST00000606933.1,ENST00000467982.2	chr1	150463933:150463987:150464073:150464138:150464886:150464965,	150464074	150464138	150464139	150464139	Splice_Site	G	A	p.G232_splice
LUAD	TCGA-05-4389-01	RBM19	ENST00000392561.3,ENST00000552386.1,ENST00000545145.2,ENST00000261741.5	chr12	114356196:114356252:114358415:114358495:114362501:114362562,	114358416	114358495	114358414	114358414	Splice_Site	A	C	p.Q795_splice
LUAD	TCGA-05-4389-01	GNB5	ENST00000396335.4,ENST00000559348.1,ENST00000558519.1,ENST00000557936.1,ENST00000358784.7,ENST00000261837.7	chr15	52416669:52416836:52418144:52418241:52420392:52420441,	52418145	52418241	52418243	52418243	Splice_Site	T	C	p.C305_splice
LUAD	TCGA-05-4389-01	CDK15	ENST00000450471.2,ENST00000460149.1,ENST00000260967.2,ENST00000374598.4,ENST00000434439.1,ENST00000410091.3	chr2	202719596:202719660:202737000:202737049:202744750:202744890,	202737001	202737049	202737000	202737000	Splice_Site	G	A	p.E337_splice
LUAD	TCGA-05-4390-01	NLRC5	ENST00000534927.1,ENST00000262510.6,ENST00000540182.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57111207:57111291:57111630:57111714:57111854:57111932,	57111631	57111714	57111715	57111715	Splice_Site	G	T	p.M1668_splice
LUAD	TCGA-05-4390-01	C17orf53	ENST00000585683.1	chr17	42225225:42226395:42231923:42232032:42232220:42232306,42230004:42230145:42231923:42232032:42232220:42232306,	42231924	42232032	42232034	42232034	Splice_Site	T	A	p.G521_splice
LUAD	TCGA-05-4390-01	C17orf53	ENST00000319977.4	chr17	42230004:42230145:42231920:42232032:42232220:42232306,	42231921	42232032	42232034	42232034	Splice_Site	T	A	p.G521_splice
LUAD	TCGA-05-4390-01	LIPG	ENST00000427224.2,ENST00000261292.4	chr18	47107784:47108027:47108731:47108852:47109925:47110144,	47108732	47108852	47108730	47108730	Splice_Site	A	T	p.V346_splice
LUAD	TCGA-05-4395-01	F13B	ENST00000367412.1	chr1	197019826:197020009:197021763:197021964:197024844:197025027,	197021764	197021964	197021763	197021763	Splice_Site	C	T	p.E519_splice
LUAD	TCGA-05-4396-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024423	237024423	Splice_Site	A	T	p.G682_splice
LUAD	TCGA-05-4396-01	CCDC25	ENST00000520202.1	chr8	27605593:27605796:27610028:27610104:27614235:27614287,27605593:27605796:27610028:27610104:27619935:27619975,	27610029	27610104	27610105	27610105	Splice_Site	C	G	p.G57_splice
LUAD	TCGA-05-4398-01	HSPG2	ENST00000374695.3	chr1	22156485:22156584:22157474:22157583:22157707:22157817,	22157475	22157583	22157584	22157584	Splice_Site	C	G	p.N3855_splice
LUAD	TCGA-05-4398-01	CYP4Z1	ENST00000471598.1,ENST00000334194.3	chr1	47581200:47581265:47582321:47582404:47583437:47583736,	47582322	47582404	47582406	47582406	Splice_Site	T	A	p.R450_splice
LUAD	TCGA-05-4398-01	PGLYRP4	ENST00000359650.5,ENST00000368739.3	chr1	153309656:153309775:153312856:153313055:153314102:153314255,	153312857	153313055	153312856	153312856	Splice_Site	C	A	p.N275_splice
LUAD	TCGA-05-4398-01	CYP17A1	ENST00000369887.3	chr10	104592749:104592965:104593792:104593879:104594541:104594771,	104593793	104593879	104593791	104593791	Splice_Site	A	G	p.K251_splice
LUAD	TCGA-05-4398-01	MFAP5	ENST00000540087.1,ENST00000537009.1,ENST00000544211.1,ENST00000544889.1,ENST00000396549.2,ENST00000433590.2,ENST00000535336.1,ENST00000359478.2,ENST00000537128.1,ENST00000538107.1,ENST00000534833.1	chr12	8808381:8808426:8813458:8813494:8814642:8814669,	8813459	8813494	8813495	8813495	Splice_Site	C	A	p.D20_splice
LUAD	TCGA-05-4398-01	TMC7	ENST00000304381.5,ENST00000421369.3	chr16	19067863:19068019:19070737:19070816:19073099:19074503,	19070738	19070816	19070736	19070736	Splice_Site	A	T	p.C676_splice
LUAD	TCGA-05-4398-01	NFATC1	ENST00000542384.1,ENST00000587635.1,ENST00000329101.4,ENST00000427363.2,ENST00000592223.1,ENST00000586434.1,ENST00000545796.1,ENST00000253506.5,ENST00000591814.1,ENST00000318065.5,ENST00000590313.1,ENST00000397790.2	chr18	77211675:77211816:77221310:77221366:77227449:77227582,	77221311	77221366	77221367	77221367	Splice_Site	G	T	p.P653_splice
LUAD	TCGA-05-4398-01	CYP20A1	ENST00000428265.1,ENST00000431118.1	chr2	204103757:204103857:204116689:204116832:204131236:204131404,204110568:204110618:204116689:204116832:204131236:204131404,	204116690	204116832	204116833	204116833	Splice_Site	G	C	p.K144_splice
LUAD	TCGA-05-4398-01	LNX1	ENST00000263925.7,ENST00000306888.2	chr4	54344731:54344909:54347886:54348021:54362189:54362561,	54347887	54348021	54347885	54347885	Splice_Site	A	G	p.K495_splice
LUAD	TCGA-05-4398-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86416434	86416434	Splice_Site	T	G	p.A442_splice
LUAD	TCGA-05-4398-01	SLC9A6	ENST00000370698.3,ENST00000370695.4,ENST00000370701.1	chrX	135081014:135081127:135084266:135084372:135092600:135092742,	135084267	135084372	135084373	135084373	Splice_Site	G	T	p.S268_splice
LUAD	TCGA-05-4402-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724821	112724821	Splice_Site	T	A	p.G235_splice
LUAD	TCGA-05-4405-01	SCAMP3	ENST00000490999.1,ENST00000302631.3,ENST00000355379.3	chr1	155226031:155226210:155226464:155226582:155227075:155227125,	155226465	155226582	155226464	155226464	Splice_Site	C	G	p.R299_splice
LUAD	TCGA-05-4405-01	TBC1D5	ENST00000429383.4,ENST00000446818.2,ENST00000253692.7,ENST00000429924.2	chr3	17279654:17279911:17299997:17300083:17333386:17333493,	17299998	17300083	17299997	17299997	Splice_Site	C	A	p.R444_splice
LUAD	TCGA-05-4410-01	COL9A2	ENST00000417105.1,ENST00000488463.1,ENST00000482722.1,ENST00000372748.3	chr1	40776385:40776439:40776764:40776818:40776901:40776958,	40776765	40776818	40776820	40776820	Splice_Site	T	A	p.G193_splice
LUAD	TCGA-05-4410-01	TGDS	ENST00000261296.5,ENST00000498294.1	chr13	95233344:95233443:95235347:95235490:95243106:95243197,	95235348	95235490	95235491	95235491	Splice_Site	C	G	p.D105_splice
LUAD	TCGA-05-4410-01	TXNRD2	ENST00000400521.1,ENST00000400518.1,ENST00000494454.1,ENST00000400525.1,ENST00000487165.1,ENST00000462330.1,ENST00000542719.1,ENST00000485358.1	chr22	19863214:19863330:19864562:19864757:19865612:19865710,	19864563	19864757	19864759	19864759	Splice_Site	T	A	p.K482_splice
LUAD	TCGA-05-4410-01	TXNRD2	ENST00000462843.1	chr22	19863214:19863330:19864631:19864757:19865612:19865710,	19864632	19864757	19864759	19864759	Splice_Site	T	A	p.K482_splice
LUAD	TCGA-05-4410-01	ADH6	ENST00000394899.2,ENST00000237653.7,ENST00000394897.1	chr4	100131571:100131659:100134762:100134904:100137317:100137419,	100134763	100134904	100134761	100134761	Splice_Site	A	G	p.G88_splice
LUAD	TCGA-05-4410-01	PDE8B	ENST00000340978.3,ENST00000333194.4,ENST00000505283.1,ENST00000342343.4,ENST00000346042.3,ENST00000264917.5	chr5	76717645:76717813:76721591:76721721:76722269:76722458,	76721592	76721721	76721722	76721722	Splice_Site	G	T	p.A850_splice
LUAD	TCGA-05-4410-01	POU6F2	ENST00000416452.1	chr7	39472675:39472882:39500145:39500314:39503780:39504309,	39500146	39500314	39500316	39500316	Splice_Site	T	A	p.R524_splice
LUAD	TCGA-05-4410-01	DECR1	ENST00000517301.1,ENST00000220764.2,ENST00000519328.1,ENST00000517597.1,ENST00000522161.1,ENST00000524332.1	chr8	91057076:91057223:91063904:91063967:91064065:91064075,	91063905	91063967	91063968	91063968	Splice_Site	G	T	p.K316_splice
LUAD	TCGA-05-4410-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19076599:19076702:19078173:19078300:19080476:19080670,	19078174	19078300	19078172	19078172	Splice_Site	A	C	p.P397_splice
LUAD	TCGA-05-4415-01	NPHP4	ENST00000378169.3,ENST00000489180.2,ENST00000378156.4,ENST00000478423.2	chr1	5924397:5924577:5925161:5925333:5926432:5926518,	5925162	5925333	5925161	5925161	Splice_Site	C	A	p.K1272_splice
LUAD	TCGA-05-4417-01	ZNF37A	ENST00000351773.3,ENST00000477790.1,ENST00000479469.1,ENST00000361085.5	chr10	38385501:38385560:38403682:38403809:38404122:38404218,	38403683	38403809	38403681	38403681	Splice_Site	A	G	p.G6_splice
LUAD	TCGA-05-4417-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000522085.1,ENST00000521120.1,ENST00000520064.2,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50834261:50834332:50835372:50835426:50847242:50847455,	50835373	50835426	50835427	50835427	Splice_Site	G	T	p.M268_splice
LUAD	TCGA-05-4417-01	CALCOCO1	ENST00000262059.4,ENST00000550804.1,ENST00000552282.1,ENST00000548263.1,ENST00000549935.2	chr12	54109576:54109831:54110043:54110199:54113522:54113613,	54110044	54110199	54110043	54110043	Splice_Site	C	T	p.V335_splice
LUAD	TCGA-05-4417-01	TOP2B	ENST00000413971.1,ENST00000264331.4,ENST00000540199.1,ENST00000435706.2,ENST00000542520.1	chr3	25651058:25651203:25654005:25654200:25656695:25656779,	25654006	25654200	25654005	25654005	Splice_Site	C	A	p.K1257_splice
LUAD	TCGA-05-4417-01	ARMC1	ENST00000523384.1	chr8	66534497:66534589:66539450:66539668:66546232:66546406,66525572:66525668:66539450:66539668:66546232:66546406,	66539451	66539668	66539450	66539450	Splice_Site	C	A	p.L61_splice
LUAD	TCGA-05-4417-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101059690:101059824:101065029:101065204:101074818:101074980,	101065030	101065204	101065029	101065030	Splice_Site	CC	AA	p.Q563_splice
LUAD	TCGA-05-4418-01	TNS4	ENST00000254051.6	chr17	38635925:38636094:38636951:38637020:38638380:38638458,	38636952	38637020	38636951	38636951	Splice_Site	C	A	p.G581_splice
LUAD	TCGA-05-4420-01	WDHD1	ENST00000421192.1	chr14	55480202:55480314:55493428:55493521:55493745:55493795,	55493429	55493521	55493428	55493428	Splice_Site	C	A	p.S26_splice
LUAD	TCGA-05-4420-01	USP19	ENST00000398892.3,ENST00000398896.1,ENST00000398898.2,ENST00000417901.1,ENST00000453664.1,ENST00000434032.2,ENST00000398888.2	chr3	49151424:49151526:49151606:49151717:49152195:49152306,	49151607	49151717	49151718	49151718	Splice_Site	C	A	p.V662_splice
LUAD	TCGA-05-4420-01	NRCAM	ENST00000418239.1,ENST00000379024.4,ENST00000379028.3,ENST00000442580.1,ENST00000425651.2	chr7	107875073:107875132:107878195:107878213:107880402:107880508,	107878196	107878213	107878195	107878195	Splice_Site	C	A	p.L42_splice
LUAD	TCGA-05-4424-01	GBP6	ENST00000370456.4,ENST00000535065.1	chr1	89848222:89848435:89849210:89849313:89849651:89849845,	89849211	89849313	89849314	89849314	Splice_Site	G	A	p.V490_splice
LUAD	TCGA-05-4424-01	ACCS	ENST00000263776.8,ENST00000527346.1	chr11	44104718:44104861:44104973:44105127:44105244:44105338,	44104974	44105127	44105128	44105128	Splice_Site	G	T	p.G470_splice
LUAD	TCGA-05-4424-01	PPP1R13B	ENST00000202556.9,ENST00000557082.1	chr14	104219336:104219533:104220406:104220581:104223986:104224088,	104220407	104220581	104220583	104220583	Splice_Site	T	A	p.E153_splice
LUAD	TCGA-05-4424-01	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000431670.2,ENST00000412622.1,ENST00000495180.1,ENST00000486886.1	chr3	111685459:111685550:111686524:111686671:111688536:111688696,	111686525	111686671	111686524	111686524	Splice_Site	G	T	p.E1057_splice
LUAD	TCGA-05-4424-01	LRWD1	ENST00000463739.1,ENST00000485808.1,ENST00000485417.1,ENST00000292616.5	chr7	102108165:102108270:102108508:102108634:102108709:102108824,	102108509	102108634	102108635	102108635	Splice_Site	G	C	p.Q268_splice
LUAD	TCGA-05-4426-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971209	21971209	Splice_Site	T	A	p.V51_splice
LUAD	TCGA-05-4426-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971209	21971209	Splice_Site	T	A	p.V51_splice
LUAD	TCGA-05-4430-01	LRPPRC	ENST00000260665.7,ENST00000409659.1,ENST00000409946.1,ENST00000447246.1	chr2	44203281:44203368:44204132:44204191:44204293:44204415,	44204133	44204191	44204192	44204192	Splice_Site	C	T	p.V198_splice
LUAD	TCGA-05-4430-01	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000450950.2,ENST00000392443.3	chr3	193129966:193130160:193132367:193132539:193151633:193151706,	193132368	193132539	193132540	193132540	Splice_Site	C	A	p.M948_splice
LUAD	TCGA-05-4432-01	FAM171A1	ENST00000378116.4	chr10	15290637:15290814:15296719:15296878:15317853:15317946,	15296720	15296878	15296879	15296879	Splice_Site	C	A	p.G140_splice
LUAD	TCGA-05-4432-01	SLK	ENST00000369755.3,ENST00000335753.4	chr10	105761201:105761330:105761929:105763285:105765318:105765449,	105761930	105763285	105763286	105763286	Splice_Site	G	A	p.Q783_splice
LUAD	TCGA-05-4432-01	MADD	ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000311027.5,ENST00000402192.2	chr11	47306496:47306616:47307001:47307141:47307983:47308085,47306496:47306616:47307001:47307141:47310941:47311044,47306491:47306745:47307001:47307141:47307983:47308085,	47307002	47307141	47307001	47307001	Splice_Site	G	T	p.R804_splice
LUAD	TCGA-05-4432-01	P4HB	ENST00000576052.1	chr17	79805202:79805223:79817054:79817263:79818202:79818354,	79817055	79817263	79817264	79817264	Splice_Site	C	A	p.Y49_splice
LUAD	TCGA-05-4432-01	VPS4B	ENST00000589604.1,ENST00000588059.1	chr18	61070939:61071059:61077522:61077679:61078699:61078811,	61077523	61077679	61077680	61077680	Splice_Site	C	G	p.Y47_splice
LUAD	TCGA-05-4432-01	TGFB1	ENST00000221930.5	chr19	41838032:41838186:41847787:41847935:41848074:41848152,	41847788	41847935	41847787	41847787	Splice_Site	C	A	p.S287_splice
LUAD	TCGA-05-4432-01	ALK	ENST00000389048.3	chr2	29754780:29754982:29917715:29917880:29940443:29940563,	29917716	29917880	29917880	29917881	Splice_Site	CC	AT	p.G263_splice
LUAD	TCGA-05-4432-01	REG3G	ENST00000393897.2,ENST00000272324.5	chr2	79253838:79253957:79254159:79254297:79254932:79255059,	79254160	79254297	79254299	79254299	Splice_Site	T	A	p.Q111_splice
LUAD	TCGA-05-4432-01	NISCH	ENST00000345716.4,ENST00000489895.1,ENST00000488380.1,ENST00000490425.1,ENST00000479054.1,ENST00000420808.2	chr3	52504874:52504923:52505829:52505993:52506318:52506389,	52505830	52505993	52505828	52505828	Splice_Site	A	G	p.G137_splice
LUAD	TCGA-05-4432-01	TINAG	ENST00000259782.4,ENST00000486436.1,ENST00000370864.3,ENST00000370869.3	chr6	54173394:54173703:54185376:54185440:54186094:54186184,	54185377	54185440	54185441	54185441	Splice_Site	G	T	p.C140_splice
LUAD	TCGA-05-4432-01	FHL5	ENST00000541107.1,ENST00000326771.2	chr6	97053777:97053947:97058447:97058634:97063484:97064444,	97058448	97058634	97058635	97058635	Splice_Site	G	T	p.G231_splice
LUAD	TCGA-05-4432-01	WIPI2	ENST00000404704.3,ENST00000288828.4,ENST00000496867.1	chr7	5230029:5230124:5239206:5239289:5254165:5254333,5232748:5232802:5239206:5239289:5254165:5254333,	5239207	5239289	5239290	5239290	Splice_Site	G	A	p.T71_splice
LUAD	TCGA-05-4433-01	CBWD1	ENST00000431099.2,ENST00000382447.4,ENST00000498044.2,ENST00000377447.3,ENST00000356521.4,ENST00000314367.10,ENST00000377400.4,ENST00000465014.2	chr9	162431:162469:163977:164037:172080:172172,	163978	164037	164038	164038	Splice_Site	C	G	p.G144_splice
LUAD	TCGA-05-5428-01	C1orf105	ENST00000367725.4	chr1	172422032:172422329:172425554:172425629:172431317:172431385,	172425555	172425629	172425554	172425554	Splice_Site	G	T	p.A67_splice
LUAD	TCGA-05-5428-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000466653.1,ENST00000264183.3,ENST00000418304.1,ENST00000491632.1	chr1	235416044:235416124:235418974:235419065:235420474:235420540,	235418975	235419065	235418974	235418975	Splice_Site	CC	AA	p.V92_splice
LUAD	TCGA-05-5428-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31812257:31812408:31814985:31815101:31815199:31815350,	31814986	31815101	31815103	31815103	Splice_Site	T	A	p.V306_splice
LUAD	TCGA-05-5428-01	MS4A12	ENST00000016913.4	chr11	60264785:60265067:60268517:60268655:60269455:60269512,	60268518	60268655	60268517	60268517	Splice_Site	G	T	p.V93_splice
LUAD	TCGA-05-5428-01	ARFGAP1	ENST00000370275.4,ENST00000520485.1,ENST00000522959.1,ENST00000370283.4,ENST00000524192.2,ENST00000522403.2,ENST00000353546.3,ENST00000519273.2,ENST00000519531.1,ENST00000523114.1,ENST00000550188.1	chr20	61906928:61906992:61907442:61907552:61907831:61907899,	61907443	61907552	61907553	61907553	Splice_Site	G	T	p.S57_splice
LUAD	TCGA-05-5428-01	CSAG1	ENST00000361211.5	chrX	151904458:151904518:151908770:151908928:151909138:151909515,	151908771	151908928	151908930	151908930	Splice_Site	C	T	p.R56_splice
LUAD	TCGA-05-5428-01	CSAG1	ENST00000370287.3,ENST00000452779.2	chrX	151904458:151904518:151908777:151908928:151909138:151909515,	151908778	151908928	151908930	151908930	Splice_Site	C	T	p.R56_splice
LUAD	TCGA-38-4626-01	SF3A3	ENST00000448721.2,ENST00000373019.4	chr1	38433715:38433806:38435025:38435136:38435242:38435407,	38435026	38435136	38435025	38435025	Splice_Site	C	A	p.A427_splice
LUAD	TCGA-38-4626-01	LRP1B	ENST00000389484.3	chr2	141130576:141130706:141135748:141135855:141143461:141143578,	141135749	141135855	141135856	141135856	Splice_Site	C	G	p.K3511_splice
LUAD	TCGA-38-4631-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000609119.1,ENST00000542537.1	chr1	237935311:237935400:237936819:237936948:237941965:237942070,	237936820	237936948	237936818	237936818	Splice_Site	A	T	p.E3883_splice
LUAD	TCGA-38-4631-01	CUBN	ENST00000377833.4	chr10	17151638:17151734:17152917:17153049:17156025:17156188,	17152918	17153049	17152917	17152917	Splice_Site	C	A	p.G339_splice
LUAD	TCGA-38-4631-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46231280:46231490:46233111:46233279:46240638:46240720,	46233112	46233279	46233111	46233111	Splice_Site	G	T	p.D444_splice
LUAD	TCGA-38-4631-01	GCC2	ENST00000409821.1,ENST00000309863.6	chr2	109066088:109066145:109067483:109067568:109068854:109068922,	109067484	109067568	109067569	109067569	Splice_Site	G	C	p.E50_splice
LUAD	TCGA-38-4631-01	DSN1	ENST00000373750.4,ENST00000473615.1,ENST00000447406.1,ENST00000426836.1,ENST00000373740.3,ENST00000373745.3,ENST00000373734.4,ENST00000492703.1,ENST00000448110.2,ENST00000438549.1,ENST00000480153.1	chr20	35386960:35387020:35390863:35390951:35395171:35395244,	35390864	35390951	35390863	35390863	Splice_Site	C	T	p.G197_splice
LUAD	TCGA-38-4631-01	SEMA6A	ENST00000257414.8,ENST00000509665.1,ENST00000343348.6,ENST00000510263.1,ENST00000515009.1	chr5	115833022:115833083:115837905:115838023:115840540:115840678,	115837906	115838023	115838024	115838024	Splice_Site	C	A	p.Y34_splice
LUAD	TCGA-38-4631-01	RHEB	ENST00000262187.5,ENST00000478470.1,ENST00000472642.1,ENST00000496004.1,ENST00000470370.1	chr7	151168634:151168691:151174418:151174501:151181822:151181890,	151174419	151174501	151174501	151174502	Splice_Site	CC	GA	p.D65_splice
LUAD	TCGA-38-4632-01	ZNF385D	ENST00000446749.1	chr3	21606093:21606176:21706377:21706520:21792386:21792606,	21706378	21706520	21706377	21706377	Splice_Site	C	A	p.A55_splice
LUAD	TCGA-38-4632-01	HEG1	ENST00000311127.4	chr3	124716532:124716667:124720695:124720856:124721100:124721159,	124720696	124720856	124720857	124720857	Splice_Site	C	A	p.R1119_splice
LUAD	TCGA-38-4632-01	GABRB1	ENST00000295454.3,ENST00000513567.1	chr4	47033930:47034022:47034433:47034501:47163265:47163486,	47034434	47034501	47034433	47034433	Splice_Site	G	T	p.G58_splice
LUAD	TCGA-38-4632-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000354312.3,ENST00000521422.1,ENST00000345306.6	chr5	68692223:68692373:68695875:68695996:68706319:68706377,	68695876	68695996	68695997	68695997	Splice_Site	G	A	p.A576_splice
LUAD	TCGA-38-6178-01	UTRN	ENST00000432686.1,ENST00000367526.4,ENST00000417142.1,ENST00000367524.3,ENST00000367545.3	chr6	145118959:145119126:145124171:145124283:145142017:145142154,	145124172	145124283	145124171	145124171	Splice_Site	G	T	p.R3082_splice
LUAD	TCGA-38-6178-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2,ENST00000536483.1	chr8	48686694:48686938:48689404:48689544:48690246:48690435,	48689405	48689544	48689545	48689545	Splice_Site	C	G	p.N4015_splice
LUAD	TCGA-44-2655-01	NEK11	ENST00000510769.1	chr3	130852673:130852800:130881251:130881371:130884269:130884363,	130881252	130881371	130881250	130881250	Splice_Site	A	T	p.M321_splice
LUAD	TCGA-44-2655-01	COL22A1	ENST00000435777.1,ENST00000303045.6	chr8	139736857:139736911:139737629:139737683:139749766:139749820,	139737630	139737683	139737684	139737684	Splice_Site	C	A	p.G714_splice
LUAD	TCGA-44-2656-01	NUF2	ENST00000497990.1,ENST00000271452.3,ENST00000442820.1,ENST00000524800.1,ENST00000534289.1,ENST00000450453.2,ENST00000367900.3	chr1	163298017:163298094:163298635:163298697:163306540:163306576,	163298636	163298697	163298635	163298635	Splice_Site	G	T	p.L92_splice
LUAD	TCGA-44-2656-01	GLRX3	ENST00000481034.1,ENST00000331244.5,ENST00000368644.1	chr10	131943474:131943583:131958258:131958333:131959059:131959137,	131958259	131958333	131958334	131958334	Splice_Site	G	T	p.K92_splice
LUAD	TCGA-44-2656-01	SLC35F4	ENST00000339762.6,ENST00000557254.1,ENST00000554729.1,ENST00000556826.1	chr14	58033192:58033282:58036505:58036698:58038611:58038733,	58036506	58036698	58036699	58036699	Splice_Site	C	A	p.V348_splice
LUAD	TCGA-44-2657-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120302479:120302620:120308016:120308091:120310837:120310930,	120308017	120308091	120308016	120308016	Splice_Site	G	C	p.S309_splice
LUAD	TCGA-44-2657-01	RFT1	ENST00000467048.1	chr3	53156389:53156579:53159924:53160010:53164353:53164427,53157739:53157856:53159924:53160010:53164353:53164427,	53159925	53160010	53160012	53160012	Splice_Site	T	A	p.V22_splice
LUAD	TCGA-44-2657-01	SLC27A6	ENST00000262462.4,ENST00000506176.1,ENST00000395266.1	chr5	128301670:128302311:128320825:128321029:128324292:128324451,	128320826	128321029	128321030	128321030	Splice_Site	G	A	p.G229_splice
LUAD	TCGA-44-2659-01	PGLYRP4	ENST00000359650.5,ENST00000368739.3	chr1	153309656:153309775:153312856:153313055:153314102:153314255,	153312857	153313055	153312856	153312856	Splice_Site	C	A	p.N275_splice
LUAD	TCGA-44-2659-01	ITGAL	ENST00000356798.6	chr16	30486833:30486901:30492759:30492905:30495147:30495285,30490651:30490782:30492759:30492905:30495147:30495280,	30492760	30492905	30492758	30492758	Splice_Site	A	G	p.F193_splice
LUAD	TCGA-44-2659-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29654516:29654857:29657313:29657516:29661855:29662049,	29657314	29657516	29657518	29657518	Splice_Site	T	A	p.S1938_splice
LUAD	TCGA-44-2659-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150120	27150120	Splice_Site	G	T	p.V141_splice
LUAD	TCGA-44-2659-01	TMEM40	ENST00000476331.1,ENST00000428020.1,ENST00000435575.1,ENST00000480698.1,ENST00000435218.2,ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12776205:12776292:12777053:12777116:12778076:12778151,	12777054	12777116	12777053	12777053	Splice_Site	C	T	p.G228_splice
LUAD	TCGA-44-2659-01	SEMA3D	ENST00000284136.6	chr7	84666204:84666349:84669988:84670058:84671486:84671601,	84669989	84670058	84669987	84669987	Splice_Site	A	T	p.S349_splice
LUAD	TCGA-44-2659-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042065	134042065	Splice_Site	G	T	p.G2346_splice
LUAD	TCGA-44-2662-01	SLC12A7	ENST00000264930.5	chr5	1088420:1088475:1089096:1089243:1093647:1093770,	1089097	1089243	1089245	1089245	Splice_Site	T	A	p.A115_splice
LUAD	TCGA-44-3396-01	NFIB	ENST00000397581.2,ENST00000380934.4,ENST00000397579.2,ENST00000380959.3,ENST00000543693.1,ENST00000380924.1,ENST00000380953.1,ENST00000397575.3	chr9	14146687:14146806:14150143:14150264:14155823:14155892,	14150144	14150264	14150265	14150265	Splice_Site	C	A	p.T229_splice
LUAD	TCGA-44-3396-01	PGK1	ENST00000491291.1,ENST00000537456.1,ENST00000373316.4	chrX	77372808:77372912:77373547:77373667:77378331:77378400,	77373548	77373667	77373668	77373668	Splice_Site	G	C	p.G214_splice
LUAD	TCGA-44-4112-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58458871:58458998:58465266:58465404:58467116:58467235,	58465267	58465404	58465266	58465266	Splice_Site	G	T	p.G80_splice
LUAD	TCGA-44-4112-01	SLFN11	ENST00000308377.4,ENST00000394566.1	chr17	33680354:33681078:33687261:33687390:33689757:33690845,	33687262	33687390	33687261	33687261	Splice_Site	C	A	p.V400_splice
LUAD	TCGA-44-4112-01	MED23	ENST00000368068.3,ENST00000539158.1,ENST00000368060.3	chr6	131931185:131931386:131937046:131937142:131939546:131939659,	131937047	131937142	131937143	131937143	Splice_Site	C	A	p.D261_splice
LUAD	TCGA-44-6145-01	GOLT1B	ENST00000539663.1,ENST00000539025.1	chr12	21660050:21660085:21661316:21661495:21665228:21665310,21659818:21659910:21661316:21661495:21665228:21665310,21654786:21654882:21661316:21661495:21665228:21665310,21660877:21661043:21661316:21661495:21665228:21665310,	21661317	21661495	21661496	21661496	Splice_Site	G	T	p.R99_splice
LUAD	TCGA-44-6145-01	NAGK	ENST00000472519.1	chr2	71300666:71300724:71302684:71303831:71304687:71304735,	71302685	71303831	71303832	71303832	Splice_Site	G	T	p.P255_splice
LUAD	TCGA-44-6145-01	NAGK	ENST00000443938.2	chr2	71302691:71302772:71303733:71303831:71304699:71304766,	71303734	71303831	71303832	71303832	Splice_Site	G	T	p.P255_splice
LUAD	TCGA-44-6774-01	IL6R	ENST00000507256.1,ENST00000368485.3,ENST00000515190.1	chr1	154420600:154420647:154422386:154422456:154437609:154437724,154420600:154420647:154422386:154422456:154426963:154427057,	154422387	154422456	154422457	154422457	Splice_Site	G	A	p.V356_splice
LUAD	TCGA-44-6774-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31613172:31613315:31632522:31633189:31648743:31648836,	31632523	31633189	31633191	31633191	Splice_Site	T	A	p.L80_splice
LUAD	TCGA-44-6775-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62854463:62854526:62854643:62854712:62858767:62858830,	62854644	62854712	62854714	62854714	Splice_Site	T	C	p.K843_splice
LUAD	TCGA-44-6777-01	DMXL2	ENST00000543779.2,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51742391:51742543:51743841:51743894:51745746:51745838,	51743842	51743894	51743895	51743895	Splice_Site	C	G	p.R2877_splice
LUAD	TCGA-44-7659-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645824	54645824	Splice_Site	C	T	p.E108_splice
LUAD	TCGA-44-7662-01	SORCS1	ENST00000344440.6,ENST00000369698.1,ENST00000452214.1,ENST00000263054.6	chr10	108357108:108357208:108366923:108367055:108371668:108371745,	108366924	108367055	108366923	108366923	Splice_Site	C	A	p.Q1055_splice
LUAD	TCGA-44-7662-01	CDCA7	ENST00000467411.1,ENST00000392567.2,ENST00000496441.1	chr2	174219620:174219712:174223439:174223565:174227953:174228190,	174223440	174223565	174223566	174223566	Splice_Site	G	T	p.T49_splice
LUAD	TCGA-44-7662-01	NPC1L1	ENST00000289547.4,ENST00000381160.3,ENST00000423141.1,ENST00000546276.1	chr7	44575438:44575567:44575854:44576027:44576440:44576541,	44575855	44576027	44576029	44576029	Splice_Site	T	C	p.G561_splice
LUAD	TCGA-44-7670-01	LDLRAD3	ENST00000315571.5	chr11	36057652:36057799:36103202:36103328:36119876:36120011,	36103203	36103328	36103329	36103329	Splice_Site	G	T	p.T107_splice
LUAD	TCGA-44-7670-01	STARD3	ENST00000544210.2,ENST00000394250.4,ENST00000336308.5,ENST00000584850.1,ENST00000488876.1,ENST00000585269.1,ENST00000578577.1,ENST00000471896.1	chr17	37817233:37817338:37818503:37818597:37819056:37819149,	37818504	37818597	37818598	37818598	Splice_Site	G	T	p.K411_splice
LUAD	TCGA-44-7671-01	PMS2	ENST00000441476.2,ENST00000406569.3,ENST00000265849.7	chr7	6026717:6027251:6029430:6029586:6031603:6031688,	6029431	6029586	6029588	6029588	Splice_Site	T	C	p.E330_splice
LUAD	TCGA-44-7671-01	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	34014313:34014396:34085917:34086017:34091472:34091582,	34085918	34086017	34085917	34085918	Splice_Site	GG	TT	p.G193_splice
LUAD	TCGA-49-4486-01	PARD3B	ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205990332:205990461:206023445:206023631:206036934:206037105,	206023446	206023631	206023445	206023445	Splice_Site	G	C	p.K479_splice
LUAD	TCGA-49-4487-01	AKR7A2	ENST00000235835.3	chr1	19632511:19632641:19634651:19634756:19634948:19634999,19633495:19633595:19634651:19634756:19634948:19634999,19633807:19633904:19634651:19634756:19634948:19634981,	19634652	19634756	19634651	19634651	Splice_Site	C	A	p.Q197_splice
LUAD	TCGA-49-4487-01	FCRL1	ENST00000368176.3,ENST00000491942.1	chr1	157769847:157769875:157771250:157771367:157771704:157771757,	157771251	157771367	157771368	157771368	Splice_Site	C	A	p.V296_splice
LUAD	TCGA-49-4487-01	TEX14	ENST00000582740.1,ENST00000389934.3,ENST00000349033.5,ENST00000240361.8	chr17	56649281:56649487:56650541:56650669:56651547:56651610,	56650542	56650669	56650541	56650541	Splice_Site	C	G	p.G1217_splice
LUAD	TCGA-49-4488-01	KIAA0556	ENST00000261588.4	chr16	27561472:27561498:27585221:27585277:27629745:27629822,	27585222	27585277	27585278	27585278	Splice_Site	G	T	p.E21_splice
LUAD	TCGA-49-4488-01	UMODL1	ENST00000408989.2,ENST00000400427.1,ENST00000400423.2,ENST00000408910.2,ENST00000400424.2	chr21	43549822:43549907:43557548:43557751:43562205:43563105,	43557549	43557751	43557548	43557548	Splice_Site	G	T	p.G1259_splice
LUAD	TCGA-49-4488-01	ATP13A5	ENST00000342358.4	chr3	193036779:193036897:193039469:193039626:193040279:193040363,	193039470	193039626	193039469	193039469	Splice_Site	C	G	p.V639_splice
LUAD	TCGA-49-4488-01	VARS	ENST00000482996.1,ENST00000428445.1,ENST00000375663.3	chr6	31749257:31749383:31749467:31749538:31749623:31749729,	31749468	31749538	31749539	31749539	Splice_Site	C	A	p.D783_splice
LUAD	TCGA-49-4490-01	STIP1	ENST00000537479.1,ENST00000305218.4,ENST00000538497.1,ENST00000358794.5,ENST00000538945.1	chr11	63964964:63965067:63965325:63965446:63967411:63967480,	63965326	63965446	63965325	63965325	Splice_Site	G	C	p.K301_splice
LUAD	TCGA-49-4494-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034492	47034492	Splice_Site	G	T	p.Q192_splice
LUAD	TCGA-49-4501-01	B4GALNT3	ENST00000322843.3,ENST00000266383.5,ENST00000544638.1,ENST00000535680.1	chr12	653504:653600:654047:654138:654534:654635,	654048	654138	654047	654047	Splice_Site	G	C	p.I150_splice
LUAD	TCGA-49-4505-01	CNOT6	ENST00000502447.1	chr5	179956274:179956388:179976930:179977117:179991488:179991578,	179976931	179977117	179976929	179976929	Splice_Site	A	G	p.G38_splice
LUAD	TCGA-49-4506-01	VARS	ENST00000461328.1,ENST00000444930.2,ENST00000375663.3	chr6	31750872:31750963:31751990:31752085:31752170:31752212,	31751991	31752085	31751989	31751989	Splice_Site	A	G	p.Q557_splice
LUAD	TCGA-49-4512-01	EPS15L1	ENST00000602022.1,ENST00000597559.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000535753.2	chr19	16547747:16547810:16548580:16548676:16551672:16551720,	16548581	16548676	16548580	16548580	Splice_Site	C	T	p.F103_splice
LUAD	TCGA-49-4514-01	PPRC1	ENST00000278070.2,ENST00000413464.2	chr10	103897606:103897795:103898375:103898522:103898635:103898737,	103898376	103898522	103898375	103898375	Splice_Site	G	C	p.S115_splice
LUAD	TCGA-49-4514-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85731039:85731497:85738544:85738738:85741237:85741339,	85738545	85738738	85738544	85738544	Splice_Site	C	A	p.R629_splice
LUAD	TCGA-49-4514-01	PASD1	ENST00000464219.1,ENST00000370357.4	chrX	150773117:150773206:150780135:150780225:150789401:150789501,	150780136	150780225	150780226	150780226	Splice_Site	G	T	p.P69_splice
LUAD	TCGA-49-6744-01	SYT9	ENST00000318881.6	chr11	7273400:7273562:7324269:7324621:7334625:7335172,	7324270	7324621	7324269	7324269	Splice_Site	G	C	p.D49_splice
LUAD	TCGA-49-6744-01	REG1A	ENST00000233735.1	chr2	79349164:79349251:79349966:79350078:79350273:79350545,	79349967	79350078	79349965	79349965	Splice_Site	A	G	p.N108_splice
LUAD	TCGA-49-6744-01	SORCS2	ENST00000329016.9,ENST00000507866.2	chr4	7715966:7716100:7716909:7717038:7719738:7719910,	7716910	7717038	7717039	7717039	Splice_Site	G	T	p.G751_splice
LUAD	TCGA-49-6745-01	SNX14	ENST00000503491.1,ENST00000369635.2,ENST00000314673.3,ENST00000505648.1	chr6	86246509:86246642:86248555:86248582:86251702:86251761,	86248556	86248582	86248583	86248583	Splice_Site	C	G	p.R483_splice
LUAD	TCGA-49-6745-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411551:116411708:116411902:116412043:116414934:116415126,	116411903	116412043	116412044	116412044	Splice_Site	G	T	p.D1010_splice
LUAD	TCGA-49-6761-01	ABI1	ENST00000376138.3,ENST00000376142.2,ENST00000359188.4,ENST00000346832.5,ENST00000376140.3,ENST00000376170.4	chr10	27059173:27059274:27060003:27060018:27065993:27066170,	27060004	27060018	27060003	27060003	Splice_Site	C	A	p.K159_splice
LUAD	TCGA-49-6761-01	EIF3M	ENST00000531921.1	chr11	32608591:32608690:32610139:32610278:32611092:32611149,	32610140	32610278	32610279	32610279	Splice_Site	G	A	p.L105_splice
LUAD	TCGA-49-6767-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474073	103474073	Splice_Site	C	A	p.G544_splice
LUAD	TCGA-49-6767-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000602177.1,ENST00000601749.1,ENST00000595618.1	chr19	17295673:17295796:17296729:17296810:17298743:17298748,	17296730	17296810	17296811	17296811	Splice_Site	G	T	p.K859_splice
LUAD	TCGA-49-6767-01	ADAMTS6	ENST00000381055.3,ENST00000464680.2	chr5	64569166:64569274:64587155:64587297:64595811:64595958,	64587156	64587297	64587298	64587298	Splice_Site	C	A	p.D457_splice
LUAD	TCGA-49-6767-01	SLC17A4	ENST00000439485.2,ENST00000377905.4	chr6	25776822:25776955:25777039:25777187:25778153:25778244,	25777040	25777187	25777188	25777188	Splice_Site	G	T	p.R423_splice
LUAD	TCGA-50-5044-01	MUC15	ENST00000436318.2,ENST00000529533.1,ENST00000455601.2	chr11	26582308:26582772:26584662:26584812:26586711:26587443,	26584663	26584812	26584813	26584813	Splice_Site	C	G	p.E232_splice
LUAD	TCGA-50-5044-01	CBWD1	ENST00000431099.2,ENST00000382447.4,ENST00000498044.2,ENST00000377447.3,ENST00000356521.4,ENST00000314367.10,ENST00000377400.4,ENST00000465014.2	chr9	162431:162469:163977:164037:172080:172172,	163978	164037	164038	164038	Splice_Site	C	G	p.G144_splice
LUAD	TCGA-50-5049-01	RIC3	ENST00000524799.1,ENST00000343202.4	chr11	8148205:8148351:8158924:8159018:8159818:8159894,	8158925	8159018	8158923	8158923	Splice_Site	A	T	p.S174_splice
LUAD	TCGA-50-5049-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112102885:112103087:112111325:112111434:112116486:112116600,	112111326	112111434	112111325	112111325	Splice_Site	G	T	p.R141_splice
LUAD	TCGA-50-5049-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147806775	147806775	Splice_Site	G	C	p.V640_splice
LUAD	TCGA-50-5049-01	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147806775	147806775	Splice_Site	G	C	p.V640_splice
LUAD	TCGA-50-5072-01	DOT1L	ENST00000452696.1	chr19	2189730:2189794:2191082:2191239:2193687:2193782,	2191083	2191239	2191240	2191240	Splice_Site	G	T	p.G165_splice
LUAD	TCGA-50-5072-01	DOT1L	ENST00000398665.3	chr19	2189730:2189794:2191010:2191239:2193687:2193782,	2191011	2191239	2191240	2191240	Splice_Site	G	T	p.G165_splice
LUAD	TCGA-50-5072-01	SNX4	ENST00000536067.1,ENST00000251775.4,ENST00000471751.1	chr3	125199090:125199163:125208251:125208307:125216184:125216232,	125208252	125208307	125208251	125208251	Splice_Site	C	G	p.K218_splice
LUAD	TCGA-50-5931-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000479037.1,ENST00000477441.1,ENST00000389044.4	chr2	230675851:230675920:230678585:230678747:230678948:230679041,	230678586	230678747	230678748	230678748	Splice_Site	C	A	p.G561_splice
LUAD	TCGA-50-5931-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000521398.1,ENST00000522006.1	chr6	112510332:112510407:112512837:112513052:112522808:112522889,	112512838	112513052	112513053	112513053	Splice_Site	C	A	p.R168_splice
LUAD	TCGA-50-5932-01	ITGB8	ENST00000222573.4,ENST00000537992.1,ENST00000478974.1	chr7	20406634:20406809:20418673:20418920:20420288:20420454,	20418674	20418920	20418673	20418673	Splice_Site	G	T	p.G130_splice
LUAD	TCGA-50-5933-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	A	p.G187_splice
LUAD	TCGA-50-5933-01	NARF	ENST00000577410.1,ENST00000309794.11,ENST00000577812.1,ENST00000345415.7,ENST00000390006.4,ENST00000374611.5	chr17	80430439:80430574:80436675:80436794:80438957:80438969,	80436676	80436794	80436675	80436675	Splice_Site	G	T	p.G174_splice
LUAD	TCGA-50-5935-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375888.1	chr10	27504463:27504570:27506908:27507112:27508651:27508732,	27506909	27507112	27506908	27506908	Splice_Site	C	A	p.D277_splice
LUAD	TCGA-50-5935-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15618368:15618413:15629017:15629146:15644268:15644337,	15629018	15629146	15629148	15629148	Splice_Site	T	A	p.D319_splice
LUAD	TCGA-50-5941-01	PAPOLG	ENST00000238714.3,ENST00000414060.1	chr2	60997592:60997646:60998653:60998765:61002168:61002258,	60998654	60998765	60998766	60998766	Splice_Site	G	T	p.G202_splice
LUAD	TCGA-50-6595-01	DSG2	ENST00000261590.8	chr18	29102045:29102212:29104410:29104548:29104665:29104851,	29104411	29104548	29104409	29104409	Splice_Site	A	G	p.E231_splice
LUAD	TCGA-50-6597-01	ZNF483	ENST00000358151.4,ENST00000309235.5,ENST00000355824.3	chr9	114289547:114290087:114293154:114293243:114296018:114296145,	114293155	114293243	114293154	114293154	Splice_Site	G	A	p.D138_splice
LUAD	TCGA-50-7109-01	LRRC42	ENST00000319223.4,ENST00000371370.3	chr1	54426028:54426147:54427706:54427795:54427968:54428082,	54427707	54427795	54427706	54427706	Splice_Site	G	T	p.C242_splice
LUAD	TCGA-53-7626-01	ARHGAP24	ENST00000506421.1,ENST00000503995.1	chr4	86396638:86396712:86491674:86491874:86643037:86643125,	86491675	86491874	86491874	86491875	Splice_Site	GG	TT	p.L60_splice
LUAD	TCGA-53-7813-01	COL28A1	ENST00000399429.3,ENST00000435823.1,ENST00000444268.1	chr7	7472262:7472331:7476025:7476094:7477024:7477066,	7476026	7476094	7476096	7476096	Splice_Site	T	C	p.G598_splice
LUAD	TCGA-53-7813-01	TAF2	ENST00000378164.2	chr8	120756527:120756633:120758944:120759174:120768245:120768355,	120758945	120759174	120758944	120758944	Splice_Site	C	A	p.P1036_splice
LUAD	TCGA-55-1592-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84659837:84659966:84683293:84683476:84685134:84685251,	84683294	84683476	84683293	84683294	Splice_Site	GG	TT	p.G1325_splice
LUAD	TCGA-55-1594-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846397	20846397	Splice_Site	T	A	p.D1837_splice
LUAD	TCGA-55-1594-01	CLK1	ENST00000409403.2	chr2	201718625:201718716:201719338:201719418:201719726:201719803,201718625:201718716:201719338:201719418:201721404:201721534,	201719339	201719418	201719419	201719419	Splice_Site	C	A	p.T381_splice
LUAD	TCGA-55-1596-01	SEC23B	ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000262544.2	chr20	18516299:18516386:18522939:18523046:18523662:18523816,	18522940	18523046	18523047	18523047	Splice_Site	G	A	p.N504_splice
LUAD	TCGA-55-1596-01	HM13	ENST00000376127.3,ENST00000469126.1,ENST00000344042.5	chr20	30132830:30132838:30136831:30136917:30137866:30137924,	30136832	30136917	30136919	30136919	Splice_Site	T	C	p.K180_splice
LUAD	TCGA-55-6642-01	SYT6	ENST00000609117.1,ENST00000610096.1,ENST00000369547.1,ENST00000607941.1,ENST00000393296.1,ENST00000610222.1	chr1	114636380:114636425:114640348:114640499:114641715:114641887,	114640349	114640499	114640500	114640500	Splice_Site	C	A	p.R370_splice
LUAD	TCGA-55-6642-01	PAPLN	ENST00000340738.5,ENST00000216658.5,ENST00000555445.1,ENST00000555123.1,ENST00000554301.1,ENST00000427855.1,ENST00000381166.3	chr14	73719356:73719483:73720461:73720669:73721220:73721403,	73720462	73720669	73720461	73720461	Splice_Site	G	T	p.R365_splice
LUAD	TCGA-55-6712-01	CYP4V2	ENST00000378802.4	chr4	187120110:187120237:187122310:187122496:187126353:187126456,	187122311	187122496	187122497	187122497	Splice_Site	G	T	p.E329_splice
LUAD	TCGA-55-6712-01	GLCCI1	ENST00000489405.1,ENST00000470583.1	chr7	8043537:8043689:8062112:8062199:8095065:8095179,	8062113	8062199	8062112	8062112	Splice_Site	G	A	p.T204_splice
LUAD	TCGA-55-6712-01	KLHL13	ENST00000541812.1,ENST00000540167.1	chrX	117054307:117054333:117079396:117079538:117250470:117250761,117054307:117054333:117079396:117079538:117162386:117162458,	117079397	117079538	117079539	117079539	Splice_Site	C	G	p.I33_splice
LUAD	TCGA-55-6970-01	PYGB	ENST00000216962.4	chr20	25255227:25255359:25257281:25257393:25257879:25257962,	25257282	25257393	25257281	25257281	Splice_Site	G	A	p.V221_splice
LUAD	TCGA-55-6970-01	SLC38A5	ENST00000416711.1,ENST00000441948.1,ENST00000440085.1,ENST00000413668.1,ENST00000376875.1,ENST00000317669.5,ENST00000376876.3	chrX	48321282:48321365:48324401:48324480:48324616:48324709,	48324402	48324480	48324401	48324401	Splice_Site	C	T	p.G164_splice
LUAD	TCGA-55-6972-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10599867:10600044:10602252:10602396,10597393:10597494:10599867:10600044:10600323:10600529,	10599868	10600044	10599866	10599866	Splice_Site	A	T	p.G570_splice
LUAD	TCGA-55-6972-01	NSUN3	ENST00000483378.1,ENST00000314622.4	chr3	93803198:93803294:93812983:93813138:93813876:93813938,	93812984	93813138	93812983	93812983	Splice_Site	G	T	p.G156_splice
LUAD	TCGA-55-6985-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39701366:39701531:39703387:39703568:39705218:39705355,	39703388	39703568	39703569	39703569	Splice_Site	C	A	p.D1366_splice
LUAD	TCGA-55-6985-01	ITGB2	ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5	chr21	46309892:46310137:46311723:46311911:46313318:46313459,	46311724	46311911	46311723	46311723	Splice_Site	C	T	p.R471_splice
LUAD	TCGA-55-6985-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000389118.4,ENST00000522533.1,ENST00000522734.1,ENST00000523189.1,ENST00000522066.1	chr5	170338031:170338138:170341170:170341244:170343468:170343588,	170341171	170341244	170341170	170341170	Splice_Site	G	T	p.I254_splice
LUAD	TCGA-55-7281-01	ACSL5	ENST00000369410.3,ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000354655.4	chr10	114181350:114181423:114181704:114181793:114182082:114182199,	114181705	114181793	114181795	114181795	Splice_Site	T	A	p.E492_splice
LUAD	TCGA-55-7281-01	KPNA4	ENST00000334256.4	chr3	160233239:160233368:160239566:160239698:160243587:160243632,	160239567	160239698	160239566	160239566	Splice_Site	C	T	p.Q301_splice
LUAD	TCGA-55-7283-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000469358.1,ENST00000542001.1,ENST00000476162.1,ENST00000541562.1,ENST00000321897.5	chr6	30890984:30891008:30891129:30891282:30892130:30892337,	30891130	30891282	30891283	30891283	Splice_Site	G	C	p.L822_splice
LUAD	TCGA-55-7573-01	SCFD2	ENST00000401642.3	chr4	53773623:53773758:53786891:53787037:54011499:54011749,	53786892	53787037	53786890	53786890	Splice_Site	G	A	p.Q569_splice
LUAD	TCGA-55-7576-01	TNFRSF8	ENST00000263932.2,ENST00000514649.1,ENST00000413146.2,ENST00000417814.2,ENST00000479933.2	chr1	12186007:12186109:12186239:12186293:12195644:12195670,	12186240	12186293	12186294	12186294	Splice_Site	G	A	p.D437_splice
LUAD	TCGA-55-7576-01	PPFIA1	ENST00000389547.3,ENST00000532504.1,ENST00000253925.7	chr11	70170952:70171117:70171605:70171680:70172367:70172469,	70171606	70171680	70171605	70171605	Splice_Site	G	T	p.V178_splice
LUAD	TCGA-55-7576-01	REG3A	ENST00000393878.1,ENST00000409839.3,ENST00000305165.2	chr2	79384697:79384824:79385451:79385589:79385776:79385895,	79385452	79385589	79385590	79385590	Splice_Site	C	T	p.L66_splice
LUAD	TCGA-55-7576-01	MYL7	ENST00000458240.1,ENST00000457314.1,ENST00000223364.3	chr7	44178467:44178621:44179119:44179168:44179380:44179459,	44179120	44179168	44179170	44179170	Splice_Site	T	A	p.E126_splice
LUAD	TCGA-55-7576-01	MYL7	ENST00000446581.1	chr7	44178467:44178621:44179020:44179168:44179380:44179459,	44179021	44179168	44179170	44179170	Splice_Site	T	A	p.E126_splice
LUAD	TCGA-55-7724-01	ATRNL1	ENST00000355044.3	chr10	116975454:116975638:117001359:117001514:117024669:117024754,	117001360	117001514	117001358	117001358	Splice_Site	A	G	p.W511_splice
LUAD	TCGA-55-7728-01	PTPRH	ENST00000376350.3,ENST00000263434.5	chr19	55697592:55697727:55697831:55697908:55698880:55698971,	55697832	55697908	55697831	55697831	Splice_Site	C	A	p.P881_splice
LUAD	TCGA-55-7815-01	RHOJ	ENST00000555125.1,ENST00000316754.3	chr14	63671576:63671765:63735827:63735886:63747688:63747754,	63735828	63735886	63735888	63735888	Splice_Site	T	C	p.Q79_splice
LUAD	TCGA-55-7815-01	GTPBP3	ENST00000324894.8,ENST00000358792.7,ENST00000361619.5,ENST00000596125.1	chr19	17450242:17450408:17451852:17452131:17452286:17452440,	17451853	17452131	17451852	17451852	Splice_Site	G	T	p.R325_splice
LUAD	TCGA-55-7903-01	IFI44L	ENST00000476521.1,ENST00000342282.3,ENST00000476876.1	chr1	79086153:79086256:79094635:79094684:79095404:79095600,	79094636	79094684	79094635	79094636	Splice_Site	GG	TT	p.G160_splice
LUAD	TCGA-55-7903-01	TRDMT1	ENST00000377799.3,ENST00000354631.3,ENST00000452380.2	chr10	17202303:17202373:17204164:17204236:17216549:17216659,17203481:17203547:17204164:17204236:17210839:17210916,	17204165	17204236	17204237	17204237	Splice_Site	C	G	p.R84_splice
LUAD	TCGA-55-7903-01	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3,ENST00000359586.6	chr10	124331829:124331877:124333230:124333278:124335914:124336238,	124333231	124333278	124333279	124333279	Splice_Site	G	A	p.G95_splice
LUAD	TCGA-55-7907-01	SPATA17	ENST00000366933.4	chr1	217804665:217804788:217822223:217822313:217824438:217824520,	217822224	217822313	217822223	217822223	Splice_Site	G	C	p.S23_splice
LUAD	TCGA-55-7907-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20112410:20112564:20113751:20113914:20114644:20114745,	20113752	20113914	20113751	20113751	Splice_Site	G	T	p.S1888_splice
LUAD	TCGA-55-7907-01	TSC2	ENST00000353929.4,ENST00000568566.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2114272:2114428:2115519:2115636:2120456:2120579,	2115520	2115636	2115637	2115637	Splice_Site	G	T	p.Q572_splice
LUAD	TCGA-55-7907-01	APOC1	ENST00000590334.1	chr19	45418395:45418474:45419446:45419582:45422429:45422466,45418130:45418206:45419446:45419582:45422429:45422466,45418130:45418206:45419446:45419582:45422097:45422126,	45419447	45419582	45419582	45419583	Splice_Site	GG	TT	p.R65_splice
LUAD	TCGA-55-7907-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4,ENST00000412011.1	chr2	24509191:24509220:24516556:24516644:24518532:24518580,	24516557	24516644	24516556	24516556	Splice_Site	C	G	p.D575_splice
LUAD	TCGA-55-7907-01	EOMES	ENST00000461503.1,ENST00000295743.4,ENST00000537516.1,ENST00000449599.1	chr3	27760354:27760384:27760850:27760972:27761661:27761816,	27760851	27760972	27760974	27760974	Splice_Site	T	C	p.G346_splice
LUAD	TCGA-55-7907-01	ATP6V1A	ENST00000273398.3,ENST00000538620.1,ENST00000461496.1,ENST00000470455.1	chr3	113522429:113522524:113524200:113524372:113528181:113528316,	113524201	113524372	113524372	113524373	Splice_Site	GG	TT	p.K587_splice
LUAD	TCGA-55-7907-01	MTCH1	ENST00000538808.1,ENST00000373616.5,ENST00000471737.1,ENST00000460219.1,ENST00000373627.5,ENST00000418541.2	chr6	36937831:36937890:36938181:36938249:36938422:36938470,	36938182	36938249	36938181	36938181	Splice_Site	C	A	p.G341_splice
LUAD	TCGA-55-7907-01	CSMD3	ENST00000455883.2	chr8	113960018:113960106:113966912:113966990:113988065:113988377,113960018:113960106:113966912:113966990:114031295:114031408,	113966913	113966990	113966912	113966912	Splice_Site	C	T	p.L474_splice
LUAD	TCGA-55-7907-01	EPB41L4B	ENST00000374557.4,ENST00000374566.3	chr9	112018053:112018123:112018415:112018504:112018672:112018760,	112018416	112018504	112018505	112018505	Splice_Site	C	T	p.G281_splice
LUAD	TCGA-55-7914-01	ROCK2	ENST00000401753.1,ENST00000261535.3,ENST00000315872.6	chr2	11355485:11355538:11355635:11355771:11356283:11356332,	11355636	11355771	11355773	11355773	Splice_Site	T	G	p.I488_splice
LUAD	TCGA-55-7914-01	CBX3	ENST00000396386.2,ENST00000409747.1	chr7	26241384:26241446:26242590:26242642:26245987:26246130,	26242591	26242642	26242643	26242643	Splice_Site	G	A	p.L8_splice
LUAD	TCGA-64-1676-01	BTBD11	ENST00000420571.2,ENST00000494235.2,ENST00000280758.5,ENST00000357167.4	chr12	108035866:108035948:108042982:108043051:108045450:108045564,	108042983	108043051	108042981	108042981	Splice_Site	A	T	p.L975_splice
LUAD	TCGA-64-1676-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77378052	77378052	Splice_Site	T	C	p.R1179_splice
LUAD	TCGA-64-1676-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77418709:77418802:77422949:77423090:77425730:77425784,	77422950	77423090	77423091	77423091	Splice_Site	C	A	p.H500_splice
LUAD	TCGA-64-1676-01	CLIC2	ENST00000369449.2,ENST00000465553.1,ENST00000491205.1	chrX	154508557:154508619:154509250:154509357:154528097:154528223,	154509251	154509357	154509358	154509358	Splice_Site	C	G	p.R98_splice
LUAD	TCGA-64-1677-01	CUL4A	ENST00000375441.3,ENST00000498562.1,ENST00000326335.4,ENST00000375440.4,ENST00000451881.1	chr13	113882291:113882359:113883759:113883833:113887490:113887653,	113883760	113883833	113883759	113883759	Splice_Site	G	C	p.I147_splice
LUAD	TCGA-64-1678-01	CXXC1	ENST00000590901.1,ENST00000412036.2,ENST00000285106.6,ENST00000589940.1	chr18	47809884:47809934:47810074:47810185:47810263:47810393,	47810075	47810185	47810186	47810186	Splice_Site	C	T	p.S472_splice
LUAD	TCGA-64-1678-01	ANK2	ENST00000394537.3,ENST00000503271.1,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000503423.1,ENST00000264366.6	chr4	114158142:114158328:114158754:114158778:114161640:114161739,	114158755	114158778	114158753	114158754	Splice_Site	AG	TA	p.M224_splice
LUAD	TCGA-64-1678-01	DDC	ENST00000444733.1	chr7	50547484:50547561:50563047:50563115:50566845:50566940,50547484:50547561:50563047:50563115:50571690:50571757,	50563048	50563115	50563117	50563117	Splice_Site	T	A	p.F293_splice
LUAD	TCGA-64-1679-01	MIPOL1	ENST00000539062.2,ENST00000556451.1,ENST00000327441.7,ENST00000396294.2,ENST00000545536.1,ENST00000554930.1,ENST00000537471.1	chr14	37739624:37739730:37754522:37754652:37777260:37777294,	37754523	37754652	37754522	37754522	Splice_Site	G	T	p.A165_splice
LUAD	TCGA-64-1679-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577447	48577447	Splice_Site	G	T	p.D877_splice
LUAD	TCGA-64-1679-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000478060.1,ENST00000469667.1	chr16	76555935:76556154:76569441:76569681:76572012:76572237,	76569442	76569681	76569441	76569441	Splice_Site	G	T	p.G919_splice
LUAD	TCGA-64-5774-01	DNAH5	ENST00000265104.4	chr5	13716595:13716799:13717423:13717629:13718990:13719210,	13717424	13717629	13717423	13717424	Splice_Site	CC	AA	p.K4235_splice
LUAD	TCGA-64-5775-01	C1orf105	ENST00000367725.4	chr1	172422032:172422329:172425554:172425629:172431317:172431385,	172425555	172425629	172425554	172425555	Splice_Site	GG	TT	p.A67_splice
LUAD	TCGA-64-5775-01	PABPC1L	ENST00000537323.1,ENST00000217074.4,ENST00000481196.1	chr20	43550265:43550372:43552801:43552897:43559158:43559367,	43552802	43552897	43552898	43552898	Splice_Site	G	T	p.K324_splice
LUAD	TCGA-64-5775-01	TBC1D19	ENST00000512840.1,ENST00000264866.4,ENST00000505206.1,ENST00000502873.1,ENST00000504442.1,ENST00000511789.1	chr4	26641762:26641809:26661218:26661329:26667954:26668027,	26661219	26661329	26661218	26661219	Splice_Site	GG	TT	p.V161_splice
LUAD	TCGA-64-5775-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21726999:21727145:21730382:21730499:21737692:21737831,	21730383	21730499	21730382	21730382	Splice_Site	G	C	p.R1982_splice
LUAD	TCGA-64-5778-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48611920:48611983:48612109:48612154:48612229:48612298,	48612110	48612154	48612109	48612109	Splice_Site	C	G	p.R2131_splice
LUAD	TCGA-64-5781-01	SEC16B	ENST00000464631.2,ENST00000308284.6	chr1	177927974:177928110:177929476:177929538:177929925:177930074,	177929477	177929538	177929539	177929539	Splice_Site	C	A	p.V313_splice
LUAD	TCGA-64-5781-01	TMED1	ENST00000591157.1	chr19	10945609:10945793:10945966:10946029:10946684:10946877,	10945967	10946029	10946030	10946030	Splice_Site	C	T	p.V62_splice
LUAD	TCGA-64-5781-01	TMED1	ENST00000591695.1	chr19	10943726:10943889:10945931:10946029:10946684:10946871,	10945932	10946029	10946030	10946030	Splice_Site	C	T	p.V62_splice
LUAD	TCGA-64-5781-01	CACNA2D3	ENST00000471363.1	chr3	54798244:54798378:54871185:54871257:54872594:54872675,	54871186	54871257	54871258	54871258	Splice_Site	G	T	p.T490_splice
LUAD	TCGA-64-5781-01	NRG1	ENST00000287842.3,ENST00000522569.1,ENST00000356819.4,ENST00000523534.1,ENST00000523079.1	chr8	32474352:32474403:32585466:32585596:32600192:32600251,	32585467	32585596	32585597	32585597	Splice_Site	G	A	p.K211_splice
LUAD	TCGA-64-5781-01	DUSP26	ENST00000256261.4,ENST00000523956.1	chr8	33449365:33449730:33451050:33451265:33454812:33455106,	33451051	33451265	33451050	33451050	Splice_Site	C	A	p.G146_splice
LUAD	TCGA-67-3771-01	CAPN9	ENST00000366666.2,ENST00000271971.2	chr1	230907759:230907845:230910299:230910377:230914718:230914879,	230910300	230910377	230910379	230910379	Splice_Site	T	A	p.W318_splice
LUAD	TCGA-67-3771-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000531848.1,ENST00000396253.3	chr11	18322374:18322463:18326968:18327040:18327681:18327894,	18326969	18327040	18327041	18327041	Splice_Site	C	T	p.R275_splice
LUAD	TCGA-67-3771-01	PDHX	ENST00000533550.1,ENST00000448838.3,ENST00000227868.4	chr11	34952950:34953031:34969052:34969153:34978930:34979130,	34969053	34969153	34969155	34969155	Splice_Site	T	C	p.V114_splice
LUAD	TCGA-67-3771-01	COL4A1	ENST00000375820.4	chr13	110815809:110815908:110817208:110817337:110818578:110818650,	110817209	110817337	110817207	110817207	Splice_Site	A	T	p.G1384_splice
LUAD	TCGA-67-3771-01	TDGF1	ENST00000471721.1,ENST00000493282.1,ENST00000296145.5	chr3	46619457:46619494:46620584:46620637:46620721:46620856,	46620585	46620637	46620584	46620584	Splice_Site	G	C	p.S12_splice
LUAD	TCGA-67-3771-01	CD99L2	ENST00000466436.1	chrX	149984479:149984551:149999703:149999766:150066994:150067082,149963890:149963959:149999703:149999766:150066994:150067082,	149999704	149999766	149999767	149999767	Splice_Site	C	A	p.G23_splice
LUAD	TCGA-67-3773-01	HSD11B1	ENST00000261465.1	chr1	209859549:209859630:209878261:209878375:209879155:209879286,	209878262	209878375	209878375	209878376	Splice_Site	GG	TT	p.E30_splice
LUAD	TCGA-67-3773-01	LTBP1	ENST00000422669.1,ENST00000272273.5,ENST00000418533.2	chr2	33567904:33568030:33572433:33572577:33585663:33585846,33540210:33540336:33572433:33572577:33585663:33585846,	33572434	33572577	33572578	33572578	Splice_Site	G	A	p.D1335_splice
LUAD	TCGA-67-6215-01	CYP4Z1	ENST00000334194.3	chr1	47546294:47546339:47548005:47548133:47550291:47550416,	47548006	47548133	47548004	47548004	Splice_Site	A	C	p.G122_splice
LUAD	TCGA-67-6217-01	ELK4	ENST00000357992.4	chr1	205585605:205585772:205588084:205588201:205589093:205589966,	205588085	205588201	205588203	205588203	Splice_Site	T	A	p.T361_splice
LUAD	TCGA-67-6217-01	C2orf80	ENST00000341287.4,ENST00000449053.1,ENST00000453017.1	chr2	209047695:209047771:209049674:209049756:209051669:209051728,	209049675	209049756	209049756	209049757	Splice_Site	CC	AA	p.L14_splice
LUAD	TCGA-69-7764-01	MACF1	ENST00000372915.3,ENST00000530262.1,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000524432.1,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39765985:39766034:39768595:39768750:39775241:39775368,	39768596	39768750	39768595	39768595	Splice_Site	G	C	p.I884_splice
LUAD	TCGA-69-7764-01	YME1L1	ENST00000326799.3	chr10	27434356:27434519:27436426:27436597:27437834:27437901,	27436427	27436597	27436425	27436425	Splice_Site	A	G	p.P113_splice
LUAD	TCGA-69-7765-01	NOL9	ENST00000377705.5	chr1	6581406:6586063:6586755:6586889:6589053:6589231,	6586756	6586889	6586755	6586755	Splice_Site	C	A	p.Q653_splice
LUAD	TCGA-69-7980-01	SSBP3	ENST00000533946.1,ENST00000533209.1,ENST00000326956.7,ENST00000371319.3,ENST00000525990.1,ENST00000426150.1	chr1	54717466:54717533:54722799:54722859:54723741:54723822,54717466:54717533:54722799:54722859:54747110:54747200,	54722800	54722859	54722799	54722799	Splice_Site	C	A	p.Q169_splice
LUAD	TCGA-69-7980-01	UHMK1	ENST00000489294.1,ENST00000538489.1,ENST00000545294.1	chr1	162469744:162470037:162470702:162470894:162473543:162473638,	162470703	162470894	162470701	162470701	Splice_Site	A	T	p.D188_splice
LUAD	TCGA-69-7980-01	ATRNL1	ENST00000423111.2,ENST00000355044.3,ENST00000303745.7	chr10	117486757:117486865:117607387:117607502:117704168:117704470,	117607388	117607502	117607386	117607386	Splice_Site	A	T	p.G1302_splice
LUAD	TCGA-69-7980-01	ITGBL1	ENST00000376180.3,ENST00000376162.3,ENST00000545560.2	chr13	102235565:102235706:102250502:102250649:102344934:102345051,	102250503	102250649	102250501	102250501	Splice_Site	A	T	p.G290_splice
LUAD	TCGA-69-7980-01	MAP2K3	ENST00000342679.4,ENST00000496046.1,ENST00000583508.1	chr17	21188133:21188281:21201724:21201791:21202189:21202238,	21201725	21201791	21201792	21201792	Splice_Site	G	C	p.T39_splice
LUAD	TCGA-69-7980-01	WNT7B	ENST00000409496.3	chr22	46327175:46327249:46345799:46346026:46372563:46372685,46327175:46327249:46345799:46346026:46368034:46368595,	46345800	46346026	46345799	46345799	Splice_Site	C	A	p.G100_splice
LUAD	TCGA-69-7980-01	MUC17	ENST00000306151.4	chr7	100692604:100692663:100693764:100693916:100694893:100694962,	100693765	100693916	100693917	100693917	Splice_Site	G	T	p.D4292_splice
LUAD	TCGA-69-7980-01	TPD52	ENST00000379096.5,ENST00000518937.1,ENST00000521241.2	chr8	80965516:80965665:80976712:80976828:80992549:80992593,80965516:80965665:80976712:80976828:81032049:81032119,80965516:80965665:80976712:80976828:81083659:81083706,	80976713	80976828	80976712	80976712	Splice_Site	C	A	p.K85_splice
LUAD	TCGA-69-7980-01	TMEM71	ENST00000522780.1	chr8	133726399:133726461:133734285:133734361:133740043:133740229,133699707:133699901:133734285:133734361:133740043:133740232,	133734286	133734361	133734362	133734362	Splice_Site	C	T	p.E225_splice
LUAD	TCGA-73-4658-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4	chr17	7802660:7802861:7803213:7803351:7803607:7803729,	7803214	7803351	7803213	7803213	Splice_Site	G	A	p.R849_splice
LUAD	TCGA-73-4658-01	FOSB	ENST00000417353.2	chr19	45971692:45971970:45973886:45974207:45975808:45975811,	45973887	45974207	45973886	45973886	Splice_Site	G	A	p.E43_splice
LUAD	TCGA-73-4658-01	PIR	ENST00000380420.5,ENST00000380421.3	chrX	15415570:15415653:15425627:15425672:15444028:15444113,	15425628	15425672	15425673	15425673	Splice_Site	C	A	p.G189_splice
LUAD	TCGA-73-4659-01	RHCG	ENST00000558360.1,ENST00000558030.1,ENST00000560081.1,ENST00000544600.1,ENST00000268122.4	chr15	90019985:90020059:90020312:90020437:90020747:90020808,	90020313	90020437	90020439	90020439	Splice_Site	T	A	p.G371_splice
LUAD	TCGA-73-4659-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000509967.2,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14316621:14316852:14330886:14331009:14336644:14336836,	14330887	14331009	14331009	14331010	Splice_Site	GG	TT	p.Q618_splice
LUAD	TCGA-73-4662-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111435	8111435	Splice_Site	G	T	p.S308_splice
LUAD	TCGA-73-4662-01	AASDH	ENST00000205214.6,ENST00000514745.1,ENST00000502617.1,ENST00000451613.1,ENST00000434343.2,ENST00000602986.1,ENST00000513376.1,ENST00000503808.1	chr4	57215428:57216224:57217507:57217623:57219569:57219762,	57217508	57217623	57217624	57217624	Splice_Site	C	T	p.G526_splice
LUAD	TCGA-73-4676-01	MAL	ENST00000354078.3	chr2	95713703:95713871:95715325:95715451:95719125:95719737,95691537:95691630:95715325:95715451:95719125:95719737,	95715326	95715451	95715324	95715324	Splice_Site	A	G	p.D88_splice
LUAD	TCGA-73-7498-01	RBM10	ENST00000345781.6,ENST00000478410.1,ENST00000377604.3,ENST00000329236.7	chrX	47039610:47039708:47039817:47039905:47040613:47040800,	47039818	47039905	47039816	47039816	Splice_Site	A	T	p.R387_splice
LUAD	TCGA-75-5122-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411551:116411708:116411902:116412043:116414934:116415126,	116411903	116412043	116412045	116412045	Splice_Site	T	C	p.D1010_splice
LUAD	TCGA-75-5126-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078851	117078851	Splice_Site	C	G	p.E122_splice
LUAD	TCGA-75-5126-01	ZFC3H1	ENST00000378743.3	chr12	72004474:72004537:72004837:72004877:72005565:72005667,	72004838	72004877	72004836	72004836	Splice_Site	A	C	p.E1923_splice
LUAD	TCGA-75-5126-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127647576:127647645:127648325:127648487:127653840:127653963,	127648326	127648487	127648325	127648325	Splice_Site	C	A	p.T1627_splice
LUAD	TCGA-75-5126-01	MCF2	ENST00000370573.4,ENST00000414978.1,ENST00000370578.4,ENST00000370576.4,ENST00000519895.1,ENST00000520602.1,ENST00000338585.6	chrX	138711853:138712003:138713553:138713670:138714493:138714613,	138713554	138713670	138713553	138713553	Splice_Site	C	A	p.N96_splice
LUAD	TCGA-75-5146-01	TRPT1	ENST00000317459.6,ENST00000541278.1,ENST00000394546.2,ENST00000546089.1,ENST00000545812.1	chr11	63992272:63992442:63992970:63993052:63993257:63993341,	63992971	63993052	63992969	63992969	Splice_Site	A	C	p.D53_splice
LUAD	TCGA-75-5147-01	TYK2	ENST00000531836.1,ENST00000525621.1,ENST00000264818.6,ENST00000529370.1	chr19	10478839:10478878:10478970:10479094:10488889:10489082,	10478971	10479094	10478970	10478970	Splice_Site	C	A	p.R106_splice
LUAD	TCGA-75-6211-01	EGLN3	ENST00000553215.1,ENST00000556785.1,ENST00000250457.3	chr14	34394716:34395128:34396165:34396239:34398281:34398418,	34396166	34396239	34396240	34396240	Splice_Site	C	A	p.R205_splice
LUAD	TCGA-75-6211-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19277893:19278029:19297340:19297442:19315936:19316153,	19297341	19297442	19297443	19297443	Splice_Site	C	G	p.R284_splice
LUAD	TCGA-75-6214-01	NFASC	ENST00000367171.4,ENST00000367170.4,ENST00000413225.1,ENST00000401399.1,ENST00000367172.4,ENST00000339876.6	chr1	204957791:204957934:204971723:204971876:204978684:204978816,204970297:204970414:204971723:204971876:204978684:204978816,	204971724	204971876	204971877	204971877	Splice_Site	G	T	p.A1097_splice
LUAD	TCGA-75-6214-01	COPS3	ENST00000578317.1,ENST00000477299.1	chr17	17171198:17171291:17174071:17174121:17174209:17174290,17171198:17171359:17174071:17174121:17174209:17174290,	17174072	17174121	17174123	17174123	Splice_Site	T	C	p.F100_splice
LUAD	TCGA-75-6214-01	USP40	ENST00000450966.1,ENST00000427112.2,ENST00000251722.6	chr2	234420354:234420443:234421214:234421268:234428259:234428317,	234421215	234421268	234421213	234421213	Splice_Site	A	G	p.V824_splice
LUAD	TCGA-75-6214-01	MAP4	ENST00000360240.6,ENST00000395734.3	chr3	47918906:47919013:47956306:47956429:47957440:47958031,	47956307	47956429	47956430	47956430	Splice_Site	C	G	p.E626_splice
LUAD	TCGA-75-6214-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034417	47034417	Splice_Site	G	C	p.G168_splice
LUAD	TCGA-75-6214-01	ZDHHC9	ENST00000371064.3,ENST00000357166.6	chrX	128944880:128944977:128945381:128945485:128946693:128946796,	128945382	128945485	128945380	128945380	Splice_Site	A	C	p.S294_splice
LUAD	TCGA-75-7025-01	NOMO1	ENST00000287667.7,ENST00000565655.1,ENST00000566823.1	chr16	14982952:14983072:14988854:14988947:14989370:14989551,	14988855	14988947	14988854	14988854	Splice_Site	G	C	p.R1149_splice
LUAD	TCGA-75-7027-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1	chr8	51449237:51449368:51465609:51465739:51503438:51503477,	51465610	51465739	51465741	51465741	Splice_Site	T	A	p.N270_splice
LUAD	TCGA-75-7030-01	RPL5	ENST00000497519.1,ENST00000370321.3	chr1	93303012:93303190:93306107:93306196:93307322:93307419,	93306108	93306196	93306107	93306107	Splice_Site	G	T	p.M236_splice
LUAD	TCGA-75-7031-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62593939:62594134:62594447:62594618:62594694:62594793,	62594448	62594618	62594447	62594447	Splice_Site	C	A	p.P656_splice
LUAD	TCGA-78-7143-01	VCAN	ENST00000265077.3,ENST00000513016.1,ENST00000502527.2,ENST00000343200.5,ENST00000512590.2,ENST00000342785.4	chr5	82868234:82868379:82875798:82875981:82876125:82876267,	82875799	82875981	82875982	82875982	Splice_Site	G	A	p.P3355_splice
LUAD	TCGA-78-7143-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411551:116411708:116411902:116412043:116414934:116415126,	116411903	116412043	116411902	116411902	Splice_Site	G	A	p.D963_splice
LUAD	TCGA-78-7145-01	WT1	ENST00000530998.1,ENST00000332351.3,ENST00000379077.3	chr11	32410587:32410725:32413517:32413610:32414211:32414301,	32413518	32413610	32413517	32413517	Splice_Site	C	T	p.S478_splice
LUAD	TCGA-78-7147-01	CACNA1G	ENST00000502264.1	chr17	48697043:48697187:48699020:48699155:48701267:48701436,48696015:48696369:48699020:48699155:48701267:48701436,	48699021	48699155	48699156	48699156	Splice_Site	G	C	p.N2020_splice
LUAD	TCGA-78-7147-01	PKNOX1	ENST00000560448.1,ENST00000291547.5,ENST00000432907.2	chr21	44437020:44437117:44438242:44438340:44441412:44441541,	44438243	44438340	44438242	44438242	Splice_Site	G	T	p.G208_splice
LUAD	TCGA-78-7148-01	CD1E	ENST00000368165.3,ENST00000452291.2,ENST00000444681.2,ENST00000368167.3	chr1	158325621:158325730:158326287:158326381:158326553:158326682,158325683:158325791:158326287:158326381:158326553:158326682,158325616:158325895:158326287:158326381:158326553:158326682,158325616:158325895:158326287:158326381:158326517:158326682,	158326288	158326381	158326382	158326382	Splice_Site	G	C	p.S333_splice
LUAD	TCGA-78-7148-01	INSC	ENST00000379554.3,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15199869:15199993:15212246:15212360:15222369:15222495,	15212247	15212360	15212246	15212246	Splice_Site	G	T	p.A241_splice
LUAD	TCGA-78-7148-01	NCAPD2	ENST00000382457.4,ENST00000545732.1,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6623638:6623753:6623938:6624086:6625993:6626037,	6623939	6624086	6624087	6624087	Splice_Site	G	A	p.E329_splice
LUAD	TCGA-78-7148-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034417	47034417	Splice_Site	G	A	p.G168_splice
LUAD	TCGA-78-7154-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228521283:228521481:228522212:228522245:228522515:228522614,	228522213	228522245	228522247	228522247	Splice_Site	T	G	p.D5363_splice
LUAD	TCGA-78-7154-01	MTA1	ENST00000331320.7,ENST00000438610.1,ENST00000406191.1	chr14	105905008:105905076:105911754:105911848:105915695:105915746,	105911755	105911848	105911754	105911754	Splice_Site	G	C	p.T33_splice
LUAD	TCGA-78-7155-01	ACADM	ENST00000526129.1,ENST00000541113.1,ENST00000420607.2,ENST00000532509.1,ENST00000526196.1,ENST00000370841.4	chr1	76198537:76198607:76199212:76199313:76200475:76200556,	76199213	76199313	76199314	76199314	Splice_Site	G	T	p.G129_splice
LUAD	TCGA-78-7155-01	ERC1	ENST00000589028.1,ENST00000355446.5,ENST00000536573.2,ENST00000546231.2,ENST00000538971.2,ENST00000360905.4,ENST00000543086.3,ENST00000545948.1,ENST00000542302.2,ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1289705:1289843:1291090:1291231:1292446:1292587,	1291091	1291231	1291232	1291232	Splice_Site	G	T	p.E672_splice
LUAD	TCGA-78-7155-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95120999	95120999	Splice_Site	C	A	p.G199_splice
LUAD	TCGA-78-7155-01	NSFL1C	ENST00000381653.5	chr20	1424379:1424556:1426310:1426794:1433137:1433275,	1426311	1426794	1426310	1426310	Splice_Site	C	A	p.R317_splice
LUAD	TCGA-78-7155-01	NSFL1C	ENST00000350991.4,ENST00000461211.1,ENST00000381658.4,ENST00000216879.4,ENST00000476071.1,ENST00000353088.2,ENST00000555944.1	chr20	1424379:1424556:1426310:1426475:1433137:1433275,	1426311	1426475	1426310	1426310	Splice_Site	C	A	p.R317_splice
LUAD	TCGA-78-7155-01	MAVS	ENST00000416600.2	chr20	3838281:3838456:3841978:3842151:3842900:3843060,3835271:3835388:3841978:3842151:3842900:3843060,	3841979	3842151	3842153	3842153	Splice_Site	T	C	p.E155_splice
LUAD	TCGA-78-7155-01	PDZRN3	ENST00000263666.4,ENST00000308537.4	chr3	73651504:73651612:73657748:73657835:73673253:73673991,	73657749	73657835	73657747	73657747	Splice_Site	A	G	p.V270_splice
LUAD	TCGA-78-7155-01	ANLN	ENST00000265748.2,ENST00000396068.2,ENST00000424865.1	chr7	36435874:36436028:36438687:36439002:36445789:36445875,	36438688	36439002	36438687	36438687	Splice_Site	G	T	p.E58_splice
LUAD	TCGA-78-7155-01	ANKRD7	ENST00000357099.4,ENST00000433239.1,ENST00000477532.1,ENST00000265224.4	chr7	117876094:117876201:117876843:117876980:117879962:117880041,	117876844	117876980	117876982	117876982	Splice_Site	T	A	p.H238_splice
LUAD	TCGA-78-7156-01	CSF3R	ENST00000373104.1,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36933675:36933822:36934756:36934858:36935252:36935441,	36934757	36934858	36934859	36934859	Splice_Site	C	T	p.E492_splice
LUAD	TCGA-78-7156-01	CAPN9	ENST00000354537.1,ENST00000366666.2,ENST00000271971.2	chr1	230903286:230903455:230904925:230905009:230907759:230907845,	230904926	230905009	230904925	230904925	Splice_Site	G	C	p.T236_splice
LUAD	TCGA-78-7156-01	SCYL1	ENST00000279270.6,ENST00000524944.1,ENST00000533862.1,ENST00000270176.5,ENST00000420247.2,ENST00000525364.1,ENST00000527009.1	chr11	65293395:65293514:65293594:65293821:65294253:65294344,	65293595	65293821	65293594	65293594	Splice_Site	G	A	p.K126_splice
LUAD	TCGA-78-7156-01	ZFYVE26	ENST00000554523.1,ENST00000557306.1,ENST00000554557.1,ENST00000347230.4,ENST00000394455.2	chr14	68221767:68221967:68222664:68222862:68228082:68228208,	68222665	68222862	68222664	68222664	Splice_Site	C	A	p.K2262_splice
LUAD	TCGA-78-7158-01	RIBC1	ENST00000375327.3	chrX	53456801:53456920:53457343:53457738:53457854:53458059,	53457344	53457738	53457342	53457342	Splice_Site	A	G	p.A222_splice
LUAD	TCGA-78-7159-01	PYGL	ENST00000530336.2,ENST00000532462.1,ENST00000216392.7	chr14	51398390:51398494:51401824:51401903:51404453:51404555,	51401825	51401903	51401905	51401905	Splice_Site	T	A	p.L116_splice
LUAD	TCGA-78-7159-01	PRKCG	ENST00000540413.1,ENST00000263431.3	chr19	54406326:54406407:54407888:54407996:54409570:54409711,	54407889	54407996	54407997	54407997	Splice_Site	G	T	p.G588_splice
LUAD	TCGA-78-7160-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38103659:38103859:38104071:38104292:38105331:38105410,	38104072	38104292	38104070	38104070	Splice_Site	A	G	p.K292_splice
LUAD	TCGA-78-7161-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220370	1220370	Splice_Site	A	T	p.G155_splice
LUAD	TCGA-78-7161-01	SLC25A32	ENST00000523866.1,ENST00000543107.1	chr8	104417003:104417089:104419861:104420012:104427011:104427297,104415391:104415552:104419861:104420012:104427011:104427297,	104419862	104420012	104420013	104420013	Splice_Site	C	A	p.V52_splice
LUAD	TCGA-78-7166-01	GTPBP10	ENST00000439832.1	chr7	89982129:89982323:89984399:89984544:90001468:90001542,89983841:89983863:89984399:89984544:90001468:90001542,89983841:89983863:89984399:89984544:90003615:90003668,89982129:89982323:89984399:89984544:90003615:90003668,	89984400	89984544	89984398	89984398	Splice_Site	A	T	p.G107_splice
LUAD	TCGA-78-7167-01	COCH	ENST00000216361.4,ENST00000396618.3,ENST00000553772.1,ENST00000475087.1	chr14	31343950:31344178:31344261:31344309:31346777:31346934,	31344262	31344309	31344261	31344261	Splice_Site	G	C	p.G12_splice
LUAD	TCGA-78-7535-01	ITIH5	ENST00000446830.2,ENST00000298441.6,ENST00000256861.6	chr10	7608220:7608370:7611630:7611747:7615104:7615158,	7611631	7611747	7611748	7611748	Splice_Site	C	T	p.V678_splice
LUAD	TCGA-78-7535-01	C2orf73	ENST00000317627.5	chr2	54558123:54558138:54570856:54571010:54586095:54586211,	54570857	54571010	54571011	54571011	Splice_Site	G	T	p.V130_splice
LUAD	TCGA-78-7536-01	SOX5	ENST00000546136.1,ENST00000537393.1,ENST00000309359.1,ENST00000367206.3,ENST00000545921.1,ENST00000451604.2	chr12	23716254:23716337:23728594:23728772:23757320:23757467,	23728595	23728772	23728774	23728774	Splice_Site	T	A	p.D389_splice
LUAD	TCGA-78-7536-01	MTA1	ENST00000331320.7,ENST00000438610.1,ENST00000490198.1,ENST00000406191.1,ENST00000405646.1,ENST00000434050.1	chr14	105927230:105927290:105929520:105929595:105929829:105929888,	105929521	105929595	105929519	105929519	Splice_Site	A	G	p.L315_splice
LUAD	TCGA-78-7536-01	HECW1	ENST00000453890.1,ENST00000395891.2	chr7	43508518:43508704:43519208:43519343:43531673:43531779,	43519209	43519343	43519207	43519207	Splice_Site	A	G	p.S1034_splice
LUAD	TCGA-78-7536-01	RRM2B	ENST00000522368.1	chr8	103238202:103238262:103244376:103244532:103250786:103251003,	103244377	103244532	103244533	103244533	Splice_Site	C	T	p.R17_splice
LUAD	TCGA-78-7537-01	CASC3	ENST00000418132.3,ENST00000474190.1,ENST00000264645.7	chr17	38318254:38318406:38318977:38319154:38319733:38319855,	38318978	38319154	38319155	38319155	Splice_Site	G	T	p.R262_splice
LUAD	TCGA-78-7542-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20352433:20352658:20355345:20355494:20357447:20357656,	20355346	20355494	20355495	20355495	Splice_Site	C	T	p.R395_splice
LUAD	TCGA-78-7542-01	MPPE1	ENST00000592894.1	chr18	11885758:11885815:11886497:11886777:11886915:11887024,	11886498	11886777	11886778	11886778	Splice_Site	C	A	p.A227_splice
LUAD	TCGA-78-7542-01	MPPE1	ENST00000592977.1,ENST00000588072.1,ENST00000317251.4,ENST00000496196.1	chr18	11886497:11886620:11886711:11886777:11886915:11887024,	11886712	11886777	11886778	11886778	Splice_Site	C	A	p.A227_splice
LUAD	TCGA-78-7542-01	TCEA1	ENST00000396401.3,ENST00000521086.2,ENST00000521604.2,ENST00000522397.1	chr8	54900673:54900819:54906227:54906315:54912504:54912610,	54906228	54906315	54906316	54906316	Splice_Site	C	T	p.D78_splice
LUAD	TCGA-78-7633-01	SP100	ENST00000264052.5,ENST00000340126.4	chr2	231371017:231371160:231372707:231372746:231375839:231375881,	231372708	231372746	231372747	231372747	Splice_Site	G	T	p.K684_splice
LUAD	TCGA-80-5608-01	HP1BP3	ENST00000491748.1,ENST00000375003.2,ENST00000488722.1,ENST00000312239.5	chr1	21072084:21072149:21074036:21074148:21076215:21076240,	21074037	21074148	21074149	21074149	Splice_Site	C	A	p.M381_splice
LUAD	TCGA-80-5608-01	B4GALNT2	ENST00000300404.2,ENST00000504681.1,ENST00000393354.2	chr17	47218608:47218809:47219396:47219534:47230161:47230268,	47219397	47219534	47219396	47219396	Splice_Site	G	T	p.W132_splice
LUAD	TCGA-86-6562-01	PAN3	ENST00000399613.1,ENST00000282391.5,ENST00000380958.3	chr13	28854548:28854678:28855451:28855516:28862120:28862259,	28855452	28855516	28855451	28855451	Splice_Site	G	T	p.E628_splice
LUAD	TCGA-86-6851-01	MORN1	ENST00000449373.1,ENST00000378525.2,ENST00000378529.3,ENST00000378531.3,ENST00000606372.1	chr1	2316416:2316504:2317245:2317336:2318857:2318968,	2317246	2317336	2317245	2317245	Splice_Site	C	A	p.Q150_splice
LUAD	TCGA-86-6851-01	MUTYH	ENST00000456914.2,ENST00000372100.5,ENST00000372115.3,ENST00000372110.3,ENST00000481571.1,ENST00000450313.1,ENST00000354383.6,ENST00000475516.1,ENST00000448481.1,ENST00000372098.3,ENST00000435155.1,ENST00000528013.2,ENST00000372104.1,ENST00000467940.1,ENST00000355498.2	chr1	45798589:45798631:45798768:45798842:45798956:45798996,	45798769	45798842	45798843	45798843	Splice_Site	C	A	p.V127_splice
LUAD	TCGA-86-6851-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000520133.1,ENST00000398972.3	chr10	71677044:71677089:71678040:71678073:71678817:71678844,	71678041	71678073	71678040	71678040	Splice_Site	G	T	p.G333_splice
LUAD	TCGA-86-6851-01	MDH1	ENST00000409908.1,ENST00000394423.1,ENST00000544381.1,ENST00000233114.8,ENST00000409476.1,ENST00000539945.1	chr2	63831829:63832006:63832413:63832527:63833072:63833162,	63832414	63832527	63832413	63832413	Splice_Site	G	C	p.T226_splice
LUAD	TCGA-86-6851-01	SFTPB	ENST00000519937.2,ENST00000409383.1,ENST00000393822.3,ENST00000342375.3,ENST00000428225.1	chr2	85892728:85892917:85893739:85893865:85894228:85894240,	85893740	85893865	85893739	85893739	Splice_Site	C	A	p.T131_splice
LUAD	TCGA-91-6828-01	NXF1	ENST00000294172.2,ENST00000530875.1,ENST00000531709.2,ENST00000532297.1,ENST00000531131.1,ENST00000439713.2	chr11	62567848:62567958:62568565:62568673:62568800:62568889,	62568566	62568673	62568674	62568674	Splice_Site	C	A	p.L267_splice
LUAD	TCGA-91-6829-01	TNFRSF9	ENST00000377507.3	chr1	7979906:7980983:7993221:7993356:7995072:7995160,	7993222	7993356	7993221	7993221	Splice_Site	C	G	p.P227_splice
LUAD	TCGA-91-6829-01	COL24A1	ENST00000436319.1,ENST00000426639.1,ENST00000370571.2	chr1	86195764:86196375:86200431:86200647:86203078:86203188,	86200432	86200647	86200648	86200648	Splice_Site	C	A	p.L1595_splice
LUAD	TCGA-91-6829-01	ABCB10	ENST00000344517.4	chr1	229657338:229657382:229661682:229661863:229662975:229663055,	229661683	229661863	229661863	229661864	Splice_Site	CC	AA	p.E576_splice
LUAD	TCGA-91-6829-01	UBE2Q2	ENST00000338677.4,ENST00000267938.4,ENST00000426727.2,ENST00000561851.1,ENST00000569423.1	chr15	76165768:76165909:76168527:76168612:76170301:76170362,	76168528	76168612	76168613	76168613	Splice_Site	G	A	p.G225_splice
LUAD	TCGA-91-6829-01	HIF3A	ENST00000244302.4,ENST00000475432.2,ENST00000377670.4,ENST00000600879.1,ENST00000300862.3,ENST00000291300.4,ENST00000528563.1,ENST00000339613.2,ENST00000526506.1	chr19	46807154:46807345:46808501:46808647:46811477:46811562,	46808502	46808647	46808501	46808501	Splice_Site	G	A	p.G73_splice
LUAD	TCGA-91-6829-01	SLCO2A1	ENST00000493729.1	chr3	133670051:133670188:133672506:133672605:133692506:133692669,	133672507	133672605	133672506	133672506	Splice_Site	C	A	p.A242_splice
LUAD	TCGA-91-6829-01	EPB41L4A	ENST00000515047.1,ENST00000507810.1,ENST00000261486.5	chr5	111530264:111530342:111531357:111531405:111540071:111540185,	111531358	111531405	111531407	111531407	Splice_Site	T	C	p.R459_splice
LUAD	TCGA-91-6835-01	CYP2S1	ENST00000310054.4	chr19	41704366:41704527:41704613:41704793:41707135:41707204,	41704614	41704793	41704794	41704794	Splice_Site	G	T	p.Q278_splice
LUAD	TCGA-91-6840-01	DNAH5	ENST00000265104.4	chr5	13829618:13829813:13830134:13830322:13830705:13830884,	13830135	13830322	13830323	13830323	Splice_Site	C	T	p.G2021_splice
LUAD	TCGA-91-6849-01	STK11	ENST00000593219.1,ENST00000586243.1,ENST00000326873.7	chr19	1221211:1221339:1221947:1222005:1222983:1223171,	1221948	1222005	1221946	1221946	Splice_Site	A	T	p.G288_splice
LUAD	TCGA-91-7771-01	PRELID2	ENST00000334744.4,ENST00000358004.2,ENST00000505416.1,ENST00000394450.2	chr5	145144493:145144563:145176004:145176110:145197456:145197617,	145176005	145176110	145176111	145176111	Splice_Site	C	A	p.W135_splice
LUAD	TCGA-93-7348-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411551:116411708:116411902:116412043:116414934:116415126,	116411903	116412043	116412044	116412044	Splice_Site	G	A	p.D1010_splice
LUAD	TCGA-95-7039-01	ITGA8	ENST00000378076.3	chr10	15614209:15614368:15617487:15617593:15628582:15628663,	15617488	15617593	15617595	15617595	Splice_Site	T	A	p.G791_splice
LUAD	TCGA-95-7039-01	RNPS1	ENST00000567147.1,ENST00000570051.1,ENST00000566458.1	chr16	2313260:2313288:2314176:2314332:2318055:2318072,	2314177	2314332	2314333	2314333	Splice_Site	C	A	p.R24_splice
LUAD	TCGA-95-7039-01	NCKIPSD	ENST00000341520.4,ENST00000416649.2,ENST00000294129.2	chr3	48716809:48716890:48717007:48717146:48717233:48717320,	48717008	48717146	48717147	48717147	Splice_Site	C	A	p.E451_splice
LUAD	TCGA-95-7039-01	SERINC5	ENST00000512721.1,ENST00000512972.2,ENST00000509193.1	chr5	79473707:79473886:79498704:79498872:79551714:79551838,	79498705	79498872	79498704	79498704	Splice_Site	C	A	p.H65_splice
LUAD	TCGA-95-7039-01	GABRP	ENST00000265294.4,ENST00000519598.1,ENST00000518525.1	chr5	170232719:170232857:170235603:170235756:170238959:170239502,170232719:170232857:170235603:170235756:170236571:170236759,	170235604	170235756	170235603	170235603	Splice_Site	G	A	p.G227_splice
LUAD	TCGA-95-7039-01	CSMD1	ENST00000519623.1,ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2857500:2857653:2875998:2876172:2886840:2887035,	2875999	2876172	2875998	2875998	Splice_Site	C	A	p.A2678_splice
LUAD	TCGA-95-7043-01	PPP1R12B	ENST00000491336.1,ENST00000608999.1,ENST00000391959.3,ENST00000367270.4,ENST00000498070.1,ENST00000290419.5,ENST00000336894.4	chr1	202457660:202457751:202462241:202462445:202464420:202464610,	202462242	202462445	202462446	202462446	Splice_Site	G	T	p.E715_splice
LUAD	TCGA-95-7043-01	BIRC2	ENST00000527910.1,ENST00000533742.1,ENST00000530675.1,ENST00000532672.1,ENST00000227758.2,ENST00000534130.1	chr11	102234398:102234447:102239036:102239279:102248226:102248328,	102239037	102239279	102239280	102239280	Splice_Site	G	T	p.D456_splice
LUAD	TCGA-95-7043-01	RASA3	ENST00000389544.4,ENST00000334062.7	chr13	114795286:114795363:114817526:114817630:114839194:114839312,114806475:114806570:114817526:114817630:114839194:114839312,	114817527	114817630	114817632	114817632	Splice_Site	T	A	p.C58_splice
LUAD	TCGA-95-7043-01	ZZEF1	ENST00000573183.1,ENST00000571436.1,ENST00000572426.1,ENST00000381638.2	chr17	3954074:3954337:3955264:3955430:3957350:3957489,	3955265	3955430	3955431	3955431	Splice_Site	C	A	p.G1812_splice
LUAD	TCGA-95-7043-01	ENGASE	ENST00000579016.1,ENST00000300682.10,ENST00000584568.1,ENST00000577783.2	chr17	77079167:77079205:77079563:77079672:77079842:77079935,	77079564	77079672	77079562	77079562	Splice_Site	A	T	p.K381_splice
LUAD	TCGA-95-7043-01	BIRC6	ENST00000421745.2	chr2	32670588:32670736:32673862:32673996:32678875:32679010,	32673863	32673996	32673862	32673862	Splice_Site	G	T	p.R1495_splice
LUAD	TCGA-95-7043-01	ZNF277	ENST00000450657.1	chr7	111846755:111846862:111926927:111927129:111935923:111936012,	111926928	111927129	111926927	111926927	Splice_Site	G	C	p.D31_splice
LUAD	TCGA-95-7567-01	DHTKD1	ENST00000437298.1	chr10	12129533:12129728:12130984:12131254:12133511:12133642,12126538:12126750:12130984:12131254:12133511:12133642,	12130985	12131254	12131255	12131255	Splice_Site	G	T	p.Q329_splice
LUAD	TCGA-95-7567-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29813400:29813644:29815889:29815985:29818633:29818773,	29815890	29815985	29815987	29815987	Splice_Site	T	C	p.T749_splice
LUAD	TCGA-95-7567-01	ATF7IP	ENST00000544627.1,ENST00000541654.1,ENST00000540793.1,ENST00000543189.1,ENST00000537653.1,ENST00000536444.1,ENST00000539659.1,ENST00000261168.4	chr12	14591063:14591201:14599921:14599987:14609494:14609568,	14599922	14599987	14599920	14599920	Splice_Site	A	G	p.A644_splice
LUAD	TCGA-95-7567-01	MTRF1	ENST00000430347.2,ENST00000379480.4,ENST00000379477.1	chr13	41808025:41808143:41814396:41814569:41826780:41826888,	41814397	41814569	41814395	41814395	Splice_Site	A	G	p.E290_splice
LUAD	TCGA-95-7567-01	EEF2K	ENST00000263026.5	chr16	22276138:22276201:22277710:22277845:22278008:22278197,	22277711	22277845	22277709	22277709	Splice_Site	A	C	p.V481_splice
LUAD	TCGA-95-7567-01	KIF19	ENST00000551294.1,ENST00000389916.4	chr17	72346845:72347044:72348005:72348276:72348357:72348465,	72348006	72348276	72348278	72348278	Splice_Site	T	C	p.D620_splice
LUAD	TCGA-95-7567-01	LGALS3BP	ENST00000591274.1,ENST00000589527.1,ENST00000589775.2,ENST00000591778.1,ENST00000262776.3,ENST00000585407.1,ENST00000588198.1	chr17	76970879:76970901:76972046:76972238:76973221:76973296,	76972047	76972238	76972045	76972045	Splice_Site	A	T	p.G82_splice
LUAD	TCGA-95-7567-01	THRB	ENST00000453729.2,ENST00000447875.1,ENST00000416420.1,ENST00000431815.1,ENST00000396671.2,ENST00000356447.4,ENST00000415021.1,ENST00000447414.1	chr3	24193953:24193981:24231564:24231825:24270428:24270492,	24231565	24231825	24231827	24231827	Splice_Site	T	C	p.E8_splice
LUAD	TCGA-95-7567-01	ZFYVE28	ENST00000290974.2,ENST00000511071.1,ENST00000503000.1	chr4	2343204:2343342:2355659:2355800:2366212:2366531,2343204:2343342:2355659:2355800:2420011:2420336,	2355660	2355800	2355658	2355658	Splice_Site	A	G	p.Q60_splice
LUAD	TCGA-95-7947-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478797	90478797	Splice_Site	G	T	p.R309_splice
LUAD	TCGA-95-7947-01	GYPC	ENST00000464053.1,ENST00000259254.4,ENST00000356887.7	chr2	127447830:127447887:127451439:127451523:127453521:127454240,	127451440	127451523	127451438	127451438	Splice_Site	A	G	p.E36_splice
LUAD	TCGA-95-7947-01	KLHL5	ENST00000508137.2	chr4	39064559:39064655:39077584:39077767:39082722:39082802,39046679:39046716:39077584:39077767:39082722:39082802,	39077585	39077767	39077583	39077583	Splice_Site	A	G	p.R174_splice
LUAD	TCGA-97-7546-01	CPA3	ENST00000296046.3	chr3	148583259:148583335:148586701:148586826:148596227:148596330,	148586702	148586826	148586701	148586701	Splice_Site	G	T	p.L49_splice
LUAD	TCGA-97-7553-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937094	48937094	Splice_Site	G	A	p.E287_splice
LUAD	TCGA-97-7554-01	NFATC1	ENST00000329101.4,ENST00000427363.2,ENST00000545796.1,ENST00000253506.5,ENST00000318065.5,ENST00000590313.1,ENST00000397790.2	chr18	77221310:77221366:77227449:77227582:77246247:77246630,	77227450	77227582	77227449	77227449	Splice_Site	G	C	p.N654_splice
LUAD	TCGA-97-7554-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6	chr19	1055095:1055350:1055905:1055938:1056064:1056242,	1055906	1055938	1055905	1055905	Splice_Site	G	T	p.G1402_splice
LUAD	TCGA-97-7554-01	MAOB	ENST00000536181.1,ENST00000538942.1,ENST00000378069.4,ENST00000487544.1	chrX	43661418:43661510:43662546:43662651:43698113:43698251,	43662547	43662651	43662545	43662545	Splice_Site	A	T	p.E128_splice
LUAD	TCGA-97-7937-01	MS4A1	ENST00000532073.1	chr11	60231760:60231817:60233393:60233630:60234431:60234533,60231760:60231817:60233393:60233630:60234470:60234533,	60233394	60233630	60233393	60233393	Splice_Site	G	T	p.V113_splice
LUAD	TCGA-97-7938-01	ATF7IP	ENST00000544627.1,ENST00000540793.1,ENST00000543189.1,ENST00000537653.1,ENST00000536444.1,ENST00000261168.4	chr12	14609494:14609568:14610140:14610229:14613428:14613501,	14610141	14610229	14610230	14610230	Splice_Site	G	T	p.V720_splice
LUAD	TCGA-97-7938-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579310	7579310	Splice_Site	A	T	p.T125_splice
LUAD	TCGA-97-7938-01	GRID2	ENST00000282020.4,ENST00000505687.1	chr4	93511281:93511437:94006145:94006430:94031898:94032104,	94006146	94006430	94006431	94006431	Splice_Site	G	A	p.D177_splice
LUAD	TCGA-97-7938-01	SLC17A1	ENST00000377886.2,ENST00000476801.1,ENST00000427328.1,ENST00000244527.4,ENST00000468082.1	chr6	25819909:25820143:25826688:25826861:25830751:25830785,	25826689	25826861	25826688	25826688	Splice_Site	C	A	p.K69_splice
LUAD	TCGA-97-7938-01	YWHAZ	ENST00000395956.3,ENST00000395957.2,ENST00000395953.2,ENST00000353245.3,ENST00000395948.2,ENST00000395951.3,ENST00000522542.1,ENST00000395958.2,ENST00000457309.1,ENST00000419477.2,ENST00000523848.1,ENST00000521607.1,ENST00000522819.1,ENST00000521309.1	chr8	101932943:101932980:101936182:101936278:101936362:101936526,	101936183	101936278	101936182	101936182	Splice_Site	C	A	p.T226_splice
LUAD	TCGA-97-7938-01	PPP1R3F	ENST00000466508.1,ENST00000438316.1,ENST00000495799.1,ENST00000376188.1	chrX	49137868:49137924:49138446:49138526:49142295:49142335,	49138447	49138526	49138527	49138527	Splice_Site	G	T	p.Q381_splice
LUAD	TCGA-97-7938-01	PPP1R3F	ENST00000055335.6	chrX	49137868:49137924:49138443:49138526:49142295:49142335,	49138444	49138526	49138527	49138527	Splice_Site	G	T	p.Q381_splice
LUAD	TCGA-97-7941-01	SCARA5	ENST00000524352.1,ENST00000354914.3	chr8	27779087:27779762:27823930:27824059:27845020:27845132,	27823931	27824059	27823930	27823930	Splice_Site	C	G	p.V81_splice
LUAD	TCGA-99-7458-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000409571.1,ENST00000301894.2	chr11	64390224:64390550:64393934:64394024:64397873:64398045,	64393935	64394024	64393933	64393933	Splice_Site	A	G	p.G237_splice
LUAD	TCGA-99-7458-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	T	p.G187_splice
LUAD	TCGA-99-7458-01	ELSPBP1	ENST00000339841.2	chr19	48511907:48511994:48517427:48517565:48519149:48519296,	48517428	48517565	48517427	48517427	Splice_Site	G	T	p.G24_splice
LUAD	TCGA-99-7458-01	NDUFV3	ENST00000354250.2	chr21	44313430:44313491:44317036:44317157:44328973:44329215,44313430:44313491:44317036:44317157:44323291:44324041,	44317037	44317157	44317035	44317035	Splice_Site	A	T	p.T17_splice
LUAD	TCGA-99-7458-01	ANK2	ENST00000394537.3,ENST00000503271.1,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000503423.1,ENST00000264366.6	chr4	114158142:114158328:114158754:114158778:114161640:114161739,	114158755	114158778	114158754	114158754	Splice_Site	G	T	p.M224_splice
LUAD	TCGA-99-7458-01	ZDHHC15	ENST00000373361.3,ENST00000373367.3,ENST00000541184.1	chrX	74651285:74651355:74670636:74670757:74698725:74698820,	74670637	74670757	74670759	74670759	Splice_Site	T	A	p.F87_splice
LUAD	TCGA-05-4249-01	ZSWIM5	ENST00000359600.5	chr1	45506063:45506210:45508890:45509067:45516745:45516925,	45508891	45509067	45508890	45508890	Splice_Site	C	-	p.E537_splice
LUAD	TCGA-05-4398-01	CDNF	ENST00000466269.1	chr10	14867492:14867619:14870143:14870271:14876215:14876332,14867492:14867619:14870143:14870271:14878249:14878289,	14870144	14870271	14870272	14870273	Splice_Site	-	T	p.V39_splice
LUAD	TCGA-05-4424-01	UGGT1	ENST00000259253.6,ENST00000376723.3,ENST00000375990.3	chr2	128935405:128935494:128936041:128936143:128937359:128937444,	128936042	128936143	128936041	128936041	Splice_Site	G	-	p.W1238_splice
LUAD	TCGA-05-5429-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132181310:132181367:132182539:132182661:132184838:132184914,	132182540	132182661	132182659	132182662	Splice_Site	TAGG	-	p.R631_splice
LUAD	TCGA-38-4631-01	ABI3BP	ENST00000495063.1,ENST00000284322.5,ENST00000475896.1	chr3	100621461:100621530:100645145:100645325:100712149:100712265,	100645146	100645325	100645145	100645145	Splice_Site	C	-	p.D94_splice
LUAD	TCGA-44-2656-01	NAE1	ENST00000562428.2	chr16	66836814:66837021:66839679:66839765:66839814:66839929,	66839680	66839765	66839678	66839679	Splice_Site	-	C	p.G499_splice
LUAD	TCGA-44-2656-01	NAE1	ENST00000290810.3,ENST00000394074.2,ENST00000379463.2,ENST00000568672.1,ENST00000359087.4	chr16	66836814:66837021:66839679:66839729:66839814:66839929,	66839680	66839729	66839678	66839679	Splice_Site	-	C	p.G499_splice
LUAD	TCGA-44-7670-01	ALKBH6	ENST00000490986.1,ENST00000590666.1,ENST00000475223.1,ENST00000470859.1,ENST00000497999.1,ENST00000378875.3,ENST00000392183.3,ENST00000466196.1	chr19	36503922:36503991:36504245:36504324:36505076:36505085,	36504246	36504324	36504245	36504245	Splice_Site	C	-	p.Q18_splice
LUAD	TCGA-44-7670-01	AMTN	ENST00000339336.4,ENST00000504451.1	chr4	71394439:71394475:71394900:71394927:71396755:71397017,	71394901	71394927	71394929	71394930	Splice_Site	-	A	p.L119_splice
LUAD	TCGA-50-5051-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2	chr20	9440281:9440457:9449217:9449319:9453436:9453494,	9449218	9449319	9449216	9449221	Splice_Site	AGGGAA	-	p.R1071_splice
LUAD	TCGA-50-6597-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411551:116411708:116411902:116412043:116414934:116415126,	116411903	116412043	116412042	116412045	Splice_Site	AGGT	-	p.D1010_splice
LUAD	TCGA-53-7626-01	NID2	ENST00000541773.1,ENST00000216286.5	chr14	52520737:52521039:52526841:52527074:52534575:52534881,	52526842	52527074	52526841	52526841	Splice_Site	C	-	p.Q256_splice
LUAD	TCGA-55-6981-01	PRPF40A	ENST00000467114.2,ENST00000493468.2,ENST00000545856.1,ENST00000410080.1,ENST00000354363.6	chr2	153537739:153537850:153547475:153547492:153549551:153549582,	153547476	153547492	153547493	153547494	Splice_Site	-	A	p.G137_splice
LUAD	TCGA-64-1676-01	WDR25	ENST00000554998.1,ENST00000402312.3,ENST00000335290.6	chr14	100847991:100848083:100934357:100934505:100950330:100950461,	100934358	100934505	100934506	100934507	Splice_Site	-	T	p.G324_splice
LUAD	TCGA-64-1676-01	FAM81A	ENST00000288228.5	chr15	59806487:59806623:59808843:59809039:59813452:59815748,	59808844	59809039	59808843	59808843	Splice_Site	G	-	p.G263_splice
LUAD	TCGA-64-5778-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48687912:48688014:48688324:48688508:48688791:48688912,	48688325	48688508	48688324	48688324	Splice_Site	C	-	p.V2124_splice
LUAD	TCGA-73-4662-01	TRAPPC6B	ENST00000469361.1,ENST00000555269.1,ENST00000330149.5,ENST00000557764.1	chr14	39619321:39619585:39620949:39621043:39623414:39623498,	39620950	39621043	39620949	39620949	Splice_Site	C	-	p.C149_splice
LUAD	TCGA-78-7155-01	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000434450.1,ENST00000324698.6	chr7	123104886:123105063:123109267:123109438:123119848:123120024,	123109268	123109438	123109440	123109440	Splice_Site	T	-	p.C471_splice
LUAD	TCGA-86-6851-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000553975.1,ENST00000393170.2,ENST00000334746.5	chr14	93717808:93717998:93719992:93720136:93723540:93723701,	93719993	93720136	93719992	93719992	Splice_Site	C	-	p.K584_splice
LUAD	TCGA-95-7039-01	PIM2	ENST00000376509.4	chrX	48771672:48771848:48772296:48772669:48775057:48775108,	48772297	48772669	48772296	48772296	Splice_Site	C	-	p.G199_splice
LUAD	TCGA-95-7567-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17156365:17156576:17156657:17156706:17158028:17158172,	17156658	17156706	17156656	17156657	Splice_Site	-	C	p.G633_splice
LUAD	TCGA-97-7937-01	LYRM7	ENST00000510516.1	chr5	130506681:130506731:130515787:130515860:130517921:130517992,130506681:130506731:130515787:130515860:130535223:130535346,	130515788	130515860	130515787	130515787	Splice_Site	G	-	p.V7_splice
LUSC	TCGA-18-3406-01	PLEKHH2	ENST00000490038.1	chr2	43980757:43980899:43986038:43986168:43989442:43989529,	43986039	43986168	43986038	43986038	Splice_Site	G	A	p.R1314_splice
LUSC	TCGA-18-3407-01	ZFAND2B	ENST00000409206.1,ENST00000289528.5,ENST00000464902.1,ENST00000409319.1,ENST00000422255.1,ENST00000409412.1,ENST00000475533.1,ENST00000409336.1,ENST00000409097.1,ENST00000409594.1,ENST00000444522.2,ENST00000409217.1	chr2	220072048:220072143:220072369:220072501:220072608:220072725,	220072370	220072501	220072369	220072369	Splice_Site	G	T	p.D51_splice
LUSC	TCGA-18-3407-01	ZFAND2B	ENST00000448496.1,ENST00000468301.1	chr2	220072048:220072143:220072369:220072496:220072608:220072725,	220072370	220072496	220072369	220072369	Splice_Site	G	T	p.D51_splice
LUSC	TCGA-18-3407-01	KAT7	ENST00000454930.2,ENST00000503935.2,ENST00000259021.4	chr17	47882724:47882807:47886480:47886570:47888837:47888936,	47886481	47886570	47886480	47886480	Splice_Site	G	T	p.V222_splice
LUSC	TCGA-18-3409-01	CACNA1E	ENST00000526775.1,ENST00000357570.5,ENST00000367573.2,ENST00000367567.4,ENST00000358338.5,ENST00000367570.1,ENST00000360108.3	chr1	181752814:181752920:181753796:181753904:181754453:181754554,	181753797	181753904	181753905	181753905	Splice_Site	G	A	p.A1860_splice
LUSC	TCGA-18-3409-01	TPR	ENST00000367478.4	chr1	186296591:186296792:186300629:186300713:186301326:186301475,	186300630	186300713	186300714	186300714	Splice_Site	C	T	p.E1869_splice
LUSC	TCGA-18-3409-01	LGALSL	ENST00000409537.2	chr2	64682477:64682549:64682722:64682811:64683421:64683599,64682477:64682549:64682722:64682811:64685418:64688515,	64682723	64682811	64682722	64682722	Splice_Site	G	A	p.I37_splice
LUSC	TCGA-18-3409-01	VWA3B	ENST00000416277.1,ENST00000448638.1,ENST00000409460.1,ENST00000473149.1,ENST00000477737.1,ENST00000432242.1,ENST00000495571.1,ENST00000489630.1	chr2	98851110:98851230:98852852:98852940:98853036:98853267,	98852853	98852940	98852942	98852942	Splice_Site	T	G	p.D839_splice
LUSC	TCGA-18-3409-01	MARCO	ENST00000327097.4,ENST00000541757.1	chr2	119749352:119749451:119750007:119750052:119750699:119750876,	119750008	119750052	119750054	119750054	Splice_Site	T	C	p.G418_splice
LUSC	TCGA-18-3409-01	TLK1	ENST00000442919.2,ENST00000413010.1,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3	chr2	171939290:171939362:171974248:171974367:172016799:172017005,	171974249	171974367	171974368	171974368	Splice_Site	C	T	p.G47_splice
LUSC	TCGA-18-3409-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48556320:48556477:48559636:48559890:48563843:48564036,	48559637	48559890	48559636	48559636	Splice_Site	G	A	p.N4600_splice
LUSC	TCGA-18-3409-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000434620.1	chr8	121240948:121241008:121243705:121243857:121256117:121256247,	121243706	121243857	121243858	121243858	Splice_Site	G	A	p.T783_splice
LUSC	TCGA-18-3409-01	PHYH	ENST00000263038.4,ENST00000396913.2,ENST00000396920.3	chr10	13319842:13320354:13322975:13323110:13325689:13325806,	13322976	13323110	13323111	13323111	Splice_Site	C	G	p.A277_splice
LUSC	TCGA-18-3409-01	MCU	ENST00000603118.1,ENST00000536019.1,ENST00000605416.1,ENST00000605597.1,ENST00000373053.3	chr10	74628601:74628621:74631134:74631338:74644023:74644140,	74631135	74631338	74631134	74631134	Splice_Site	G	A	p.V220_splice
LUSC	TCGA-18-3409-01	TM9SF3	ENST00000371142.4	chr10	98292807:98292947:98303832:98303963:98307651:98307746,	98303833	98303963	98303964	98303964	Splice_Site	C	T	p.G352_splice
LUSC	TCGA-18-3409-01	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70938336:70938443:70946556:70946800:70948939:70949089,	70946557	70946800	70946555	70946555	Splice_Site	A	G	p.R1578_splice
LUSC	TCGA-18-3410-01	PPFIA1	ENST00000526262.1,ENST00000530548.1,ENST00000532504.1,ENST00000253925.7,ENST00000531657.1	chr11	70222637:70222706:70224135:70224301:70228193:70228264,	70224136	70224301	70224135	70224135	Splice_Site	G	T	p.D1129_splice
LUSC	TCGA-18-3411-01	GTF2IRD1	ENST00000265755.3	chr7	73969503:73969553:73969722:73969824:73971968:73972052,	73969723	73969824	73969722	73969722	Splice_Site	G	C	p.G656_splice
LUSC	TCGA-18-3411-01	DIP2C	ENST00000280886.6	chr10	355970:356032:372945:373116:375372:375466,	372946	373116	373117	373117	Splice_Site	C	A	p.A1252_splice
LUSC	TCGA-18-3412-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46096153:46096278:46099160:46099319:46099767:46099908,	46099161	46099319	46099321	46099321	Splice_Site	T	A	p.S296_splice
LUSC	TCGA-18-3412-01	OGFOD1	ENST00000565209.1,ENST00000561646.1,ENST00000568397.1,ENST00000336111.5,ENST00000562150.1,ENST00000566157.1	chr16	56492459:56492506:56496445:56496546:56500063:56500091,	56496446	56496546	56496445	56496445	Splice_Site	G	T	p.R116_splice
LUSC	TCGA-18-3416-01	ILDR2	ENST00000469934.2,ENST00000271417.3	chr1	166904537:166904714:166905827:166905974:166908750:166908807,	166905828	166905974	166905975	166905975	Splice_Site	C	A	p.E186_splice
LUSC	TCGA-18-3416-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127413	170127413	Splice_Site	C	A	p.G774_splice
LUSC	TCGA-18-3416-01	OPA1	ENST00000434811.1,ENST00000497189.1,ENST00000392438.3,ENST00000361828.2	chr3	193343880:193343991:193349400:193349454:193353206:193353311,193336657:193336725:193349400:193349454:193353206:193353311,	193349401	193349454	193349400	193349400	Splice_Site	G	T	p.V264_splice
LUSC	TCGA-18-3416-01	GSG1L	ENST00000380898.2,ENST00000569166.1	chr16	27802690:27802788:27818807:27818875:27840109:27840277,27802690:27802788:27818807:27818875:27835182:27835236,	27818808	27818875	27818807	27818807	Splice_Site	C	T	p.R300_splice
LUSC	TCGA-18-3417-01	SYNE1	ENST00000367255.5,ENST00000265368.4,ENST00000471834.1	chr6	152665215:152665362:152668193:152668370:152671302:152671470,	152668194	152668370	152668193	152668193	Splice_Site	C	A	p.R4026_splice
LUSC	TCGA-18-3417-01	CTSW	ENST00000526034.1,ENST00000528419.1,ENST00000307886.3	chr11	65647672:65647757:65648877:65648991:65649645:65649800,	65648878	65648991	65648993	65648993	Splice_Site	T	G	p.E96_splice
LUSC	TCGA-18-3419-01	PTPRG	ENST00000474889.1	chr3	62204524:62204657:62216898:62216985:62229480:62229572,	62216899	62216985	62216897	62216897	Splice_Site	A	G	p.R763_splice
LUSC	TCGA-18-3419-01	KCNIP4	ENST00000447367.2,ENST00000509207.1,ENST00000382152.2,ENST00000359001.5,ENST00000382149.4,ENST00000515786.2,ENST00000382148.3,ENST00000382150.4	chr4	20736250:20736358:20751284:20751355:20760443:20760513,	20751285	20751355	20751284	20751284	Splice_Site	C	T	p.E143_splice
LUSC	TCGA-18-3421-01	CD96	ENST00000283285.5	chr3	111286427:111286494:111296348:111296396:111297873:111298081,	111296349	111296396	111296348	111296348	Splice_Site	G	T	p.E182_splice
LUSC	TCGA-18-3421-01	ABCC8	ENST00000531642.1,ENST00000389817.3,ENST00000526037.1,ENST00000526168.1,ENST00000302539.4	chr11	17414534:17414675:17415243:17415306:17415812:17415946,	17415244	17415306	17415307	17415307	Splice_Site	C	A	p.E1516_splice
LUSC	TCGA-18-3421-01	ABCC8	ENST00000531642.1,ENST00000389817.3,ENST00000526037.1,ENST00000526168.1,ENST00000302539.4	chr11	17414534:17414675:17415243:17415306:17415812:17415946,	17415244	17415306	17415308	17415308	Splice_Site	T	A	p.E1516_splice
LUSC	TCGA-18-3421-01	TSG101	ENST00000438874.2,ENST00000536719.1,ENST00000251968.3,ENST00000535077.1	chr11	18531088:18531212:18536224:18536388:18537645:18537710,	18536225	18536388	18536390	18536390	Splice_Site	T	G	p.G65_splice
LUSC	TCGA-18-3421-01	SLCO1C1	ENST00000545102.1	chr12	20848683:20848741:20858882:20859015:20864319:20864444,	20858883	20859015	20858882	20858882	Splice_Site	G	A	p.G91_splice
LUSC	TCGA-18-3421-01	VAMP7	ENST00000286448.6,ENST00000463317.1,ENST00000460621.1,ENST00000488344.1,ENST00000479687.1	chrX	155130163:155130251:155149476:155149544:155169364:155169454,	155149477	155149544	155149476	155149476	Splice_Site	G	T	p.D145_splice
LUSC	TCGA-18-4083-01	RGS7	ENST00000366562.4,ENST00000407727.1,ENST00000366563.1,ENST00000366565.1,ENST00000331110.7,ENST00000366564.1	chr1	241099899:241100006:241146378:241146429:241261965:241262062,	241146379	241146429	241146430	241146430	Splice_Site	C	T	p.G59_splice
LUSC	TCGA-18-4083-01	EXO1	ENST00000366548.3,ENST00000518483.1,ENST00000348581.5	chr1	242042341:242042645:242045217:242045319:242048615:242048809,	242045218	242045319	242045216	242045216	Splice_Site	A	G	p.E704_splice
LUSC	TCGA-18-4083-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68204356:68204467:68205913:68206150:68207244:68207384,	68205914	68206150	68205913	68205913	Splice_Site	G	C	p.E1371_splice
LUSC	TCGA-18-4083-01	TAF4B	ENST00000578121.1,ENST00000269142.5	chr18	23873389:23873495:23895192:23895362:23901033:23901164,	23895193	23895362	23895363	23895363	Splice_Site	G	C	p.G673_splice
LUSC	TCGA-18-4083-01	PXMP4	ENST00000344022.3	chr20	32295294:32295775:32302479:32302542:32307900:32308106,	32302480	32302542	32302479	32302479	Splice_Site	C	A	p.S59_splice
LUSC	TCGA-18-4083-01	PTPRT	ENST00000373198.4,ENST00000373187.1,ENST00000356100.2,ENST00000373193.3,ENST00000373201.1,ENST00000373184.1,ENST00000373190.1	chr20	41306505:41306799:41385101:41385276:41400074:41400190,	41385102	41385276	41385101	41385101	Splice_Site	C	A	p.E287_splice
LUSC	TCGA-18-4086-01	CRYL1	ENST00000382812.1,ENST00000298248.7	chr13	20977809:20978381:20978773:20978880:20987420:20987526,	20978774	20978880	20978773	20978773	Splice_Site	C	A	p.Q282_splice
LUSC	TCGA-18-5592-01	CORO6	ENST00000580212.1	chr17	27943719:27943865:27943955:27944060:27944517:27944637,27943732:27943865:27943955:27944060:27944259:27944358,27943719:27943865:27943955:27944060:27945065:27945135,27943719:27943865:27943955:27944060:27945807:27945989,	27943956	27944060	27944061	27944061	Splice_Site	C	T	p.N252_splice
LUSC	TCGA-18-5595-01	SLC17A1	ENST00000377886.2,ENST00000476801.1,ENST00000427328.1,ENST00000244527.4,ENST00000468082.1	chr6	25819909:25820143:25826688:25826861:25830751:25830785,	25826689	25826861	25826862	25826862	Splice_Site	C	T	p.V12_splice
LUSC	TCGA-18-5595-01	MPPED2	ENST00000448418.2,ENST00000358117.5,ENST00000526437.1	chr11	30435774:30435888:30439064:30439180:30516842:30517068,	30439065	30439180	30439182	30439182	Splice_Site	T	A	p.W179_splice
LUSC	TCGA-18-5595-01	COPZ1	ENST00000550027.1,ENST00000553231.1,ENST00000552362.1,ENST00000551779.1,ENST00000549043.1,ENST00000455864.2,ENST00000551412.1,ENST00000550713.1,ENST00000548753.1,ENST00000262061.2	chr12	54734330:54734399:54739243:54739299:54741550:54741624,54735989:54736071:54739243:54739299:54741550:54741624,54737008:54737100:54739243:54739299:54741550:54741624,	54739244	54739299	54739300	54739300	Splice_Site	G	T	p.R106_splice
LUSC	TCGA-21-1070-01	ACTL6A	ENST00000487978.1	chr3	179291156:179291257:179292157:179292255:179293190:179293276,	179292158	179292255	179292256	179292256	Splice_Site	G	T	p.A159_splice
LUSC	TCGA-21-1070-01	OGT	ENST00000488174.1,ENST00000373719.3,ENST00000373701.3	chrX	70783178:70783349:70784450:70784603:70787349:70787602,	70784451	70784603	70784604	70784604	Splice_Site	G	T	p.N863_splice
LUSC	TCGA-21-1076-01	CRYZ	ENST00000370872.3,ENST00000417775.1,ENST00000340866.5,ENST00000370870.1	chr1	75172788:75172888:75175781:75175931:75180262:75180314,	75175782	75175931	75175781	75175781	Splice_Site	C	A	p.K210_splice
LUSC	TCGA-21-1076-01	TGM4	ENST00000422219.1,ENST00000495844.1,ENST00000296125.4	chr3	44932101:44932224:44935068:44935187:44938200:44938231,	44935069	44935187	44935188	44935188	Splice_Site	G	T	p.Q183_splice
LUSC	TCGA-21-1076-01	ANXA5	ENST00000509648.1,ENST00000515717.1,ENST00000296511.5,ENST00000506395.1,ENST00000515017.1,ENST00000501272.2	chr4	122591108:122591167:122592701:122592797:122593687:122593713,	122592702	122592797	122592701	122592701	Splice_Site	C	A	p.V241_splice
LUSC	TCGA-21-1076-01	UTRN	ENST00000367526.4,ENST00000460618.1,ENST00000367545.3	chr6	145160359:145160420:145161875:145161968:145167940:145167958,	145161876	145161968	145161969	145161969	Splice_Site	G	T	p.P3424_splice
LUSC	TCGA-21-1076-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107599693:107599925:107600135:107600279:107600889:107601094,	107600136	107600279	107600135	107600135	Splice_Site	C	T	p.P844_splice
LUSC	TCGA-21-1077-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48611920:48611983:48612109:48612154:48612229:48612298,	48612110	48612154	48612109	48612109	Splice_Site	C	T	p.R2131_splice
LUSC	TCGA-21-5782-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911898	29911898	Splice_Site	G	A	p.D207_splice
LUSC	TCGA-21-5782-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32446927:32447080:32458630:32459056:32480394:32481489,	32458631	32459056	32459057	32459057	Splice_Site	G	A	p.Q335_splice
LUSC	TCGA-21-5782-01	TOP3B	ENST00000413067.2,ENST00000444502.1,ENST00000457179.1,ENST00000357179.5,ENST00000457270.1,ENST00000398793.2	chr22	22319656:22319747:22321974:22322088:22322990:22323112,	22321975	22322088	22322090	22322090	Splice_Site	T	C	p.V247_splice
LUSC	TCGA-21-5784-01	UCHL5	ENST00000420791.1,ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000530098.2,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998308:192998439:192998517:192998579:192998661:192998705,	192998518	192998579	192998516	192998516	Splice_Site	A	T	p.R145_splice
LUSC	TCGA-21-5784-01	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016091	167016091	Splice_Site	A	T	p.E627_splice
LUSC	TCGA-21-5784-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855937	100855937	Splice_Site	C	G	p.P294_splice
LUSC	TCGA-21-5784-01	POLA1	ENST00000379059.3,ENST00000379068.3	chrX	24759491:24759621:24760118:24760238:24761346:24761446,	24760119	24760238	24760118	24760118	Splice_Site	G	C	p.S777_splice
LUSC	TCGA-21-5786-01	NELL1	ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	20691206:20691324:20699477:20699606:20805225:20805376,	20699478	20699606	20699477	20699477	Splice_Site	G	A	p.V47_splice
LUSC	TCGA-21-5786-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28090104:28090198:28096527:28096621:28116299:28116404,	28096528	28096621	28096622	28096622	Splice_Site	C	A	p.I749_splice
LUSC	TCGA-21-5786-01	CHEK2	ENST00000382580.2,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1	chr22	29091697:29091861:29092888:29092975:29095825:29095925,	29092889	29092975	29092887	29092887	Splice_Site	A	G	p.K365_splice
LUSC	TCGA-22-1011-01	SLC25A47	ENST00000557052.1,ENST00000361529.3	chr14	100792498:100792565:100793524:100793707:100795062:100795381,	100793525	100793707	100793708	100793708	Splice_Site	G	A	p.R109_splice
LUSC	TCGA-22-1012-01	ETV3	ENST00000368192.4	chr1	157090982:157095771:157103903:157104019:157105262:157105500,	157103904	157104019	157104020	157104020	Splice_Site	C	A	p.R95_splice
LUSC	TCGA-22-1012-01	MAPKBP1	ENST00000456763.2,ENST00000512970.1,ENST00000505373.1,ENST00000260357.7,ENST00000505061.1,ENST00000457542.2,ENST00000514566.1,ENST00000221214.6	chr15	42109589:42109656:42109811:42109933:42110206:42110282,	42109812	42109933	42109934	42109934	Splice_Site	G	T	p.R641_splice
LUSC	TCGA-22-1016-01	XDH	ENST00000379416.3	chr2	31596738:31596822:31598245:31598420:31599918:31600103,	31598246	31598420	31598422	31598422	Splice_Site	T	A	p.K476_splice
LUSC	TCGA-22-1016-01	MCM6	ENST00000264156.2	chr2	136615466:136615574:136616870:136617012:136620176:136620318,	136616871	136617012	136617013	136617013	Splice_Site	C	A	p.K407_splice
LUSC	TCGA-22-1016-01	PPIG	ENST00000417938.2,ENST00000260970.3,ENST00000433207.1,ENST00000462903.1,ENST00000414307.1,ENST00000448752.2	chr2	170463613:170463658:170465180:170465268:170470973:170471003,	170465181	170465268	170465179	170465179	Splice_Site	A	G	p.D97_splice
LUSC	TCGA-22-1016-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39591636:39591681:39596462:39596549:39597188:39597267,	39596463	39596549	39596551	39596551	Splice_Site	T	A	p.S215_splice
LUSC	TCGA-22-4593-01	SIDT1	ENST00000463226.1,ENST00000393830.3,ENST00000264852.4	chr3	113327265:113327383:113329854:113329991:113330932:113331041,	113329855	113329991	113329993	113329993	Splice_Site	T	C	p.V619_splice
LUSC	TCGA-22-4593-01	MS4A15	ENST00000528170.1,ENST00000405633.3,ENST00000337911.4	chr11	60538763:60538820:60540864:60540957:60541309:60541423,	60540865	60540957	60540959	60540959	Splice_Site	T	C	p.R166_splice
LUSC	TCGA-22-4593-01	TULP3	ENST00000538354.1,ENST00000397132.2,ENST00000448120.2	chr12	3031427:3031568:3039413:3039511:3040202:3040305,	3039414	3039511	3039413	3039413	Splice_Site	G	C	p.D132_splice
LUSC	TCGA-22-4593-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000546465.1,ENST00000359794.5,ENST00000546964.1,ENST00000552752.1,ENST00000340802.6,ENST00000312352.7,ENST00000395233.2,ENST00000551804.1	chr12	48535120:48535164:48535522:48535610:48535696:48535849,	48535523	48535610	48535522	48535522	Splice_Site	G	C	p.R542_splice
LUSC	TCGA-22-4595-01	TNC	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1	chr9	117844970:117845086:117846487:117846751:117848142:117849552,	117846488	117846751	117846753	117846753	Splice_Site	T	C	p.V623_splice
LUSC	TCGA-22-4599-01	DROSHA	ENST00000442743.1,ENST00000513349.1,ENST00000344624.3,ENST00000512076.1,ENST00000511367.2	chr5	31504661:31504742:31508727:31508882:31511141:31511283,	31508728	31508882	31508727	31508727	Splice_Site	C	A	p.Q529_splice
LUSC	TCGA-22-4599-01	ITGA8	ENST00000378076.3	chr10	15561288:15561411:15573048:15573150:15590453:15590567,	15573049	15573150	15573047	15573047	Splice_Site	A	T	p.V994_splice
LUSC	TCGA-22-4599-01	ZFAND4	ENST00000374366.3,ENST00000374371.2,ENST00000344646.5,ENST00000495747.1,ENST00000465407.1	chr10	46143922:46143982:46147413:46147481:46158989:46159290,46143922:46143982:46147413:46147481:46148431:46148507,	46147414	46147481	46147483	46147483	Splice_Site	T	C	p.N87_splice
LUSC	TCGA-22-4599-01	HAO1	ENST00000378789.3	chr20	7866167:7866237:7866352:7866511:7875779:7875871,	7866353	7866511	7866512	7866512	Splice_Site	C	A	p.I272_splice
LUSC	TCGA-22-4604-01	PRKCI	ENST00000476635.1,ENST00000485837.1,ENST00000295797.4	chr3	170015091:170015181:170016782:170016898:170020827:170020953,	170016783	170016898	170016900	170016900	Splice_Site	T	G	p.D568_splice
LUSC	TCGA-22-4604-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7166164:7166415:7167978:7168105:7170547:7170762,	7167979	7168105	7168106	7168106	Splice_Site	C	A	p.C495_splice
LUSC	TCGA-22-4607-01	MLPH	ENST00000415753.1,ENST00000264605.3,ENST00000445024.2,ENST00000494110.1	chr2	238434374:238434448:238443206:238443290:238448990:238449089,238436077:238436159:238443206:238443290:238448990:238449035,	238443207	238443290	238443205	238443205	Splice_Site	A	C	p.I341_splice
LUSC	TCGA-22-4607-01	LGALS12	ENST00000415491.2,ENST00000340246.5,ENST00000394618.3	chr11	63277934:63277973:63278550:63278577:63279223:63279312,	63278551	63278577	63278578	63278578	Splice_Site	G	C	p.L209_splice
LUSC	TCGA-22-4613-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167240119:167240272:167245607:167245805:167246839:167247027,	167245608	167245805	167245807	167245807	Splice_Site	T	C	p.E451_splice
LUSC	TCGA-22-4613-01	NKAIN2	ENST00000368416.1,ENST00000545433.1,ENST00000368417.1	chr6	124604150:124604288:124676412:124676493:124979331:124979532,	124676413	124676493	124676411	124676411	Splice_Site	A	T	p.Y65_splice
LUSC	TCGA-22-4613-01	SLC44A1	ENST00000374723.1,ENST00000470972.1,ENST00000374724.1,ENST00000374720.3,ENST00000343170.7	chr9	108127763:108127920:108128626:108128710:108136878:108137016,	108128627	108128710	108128711	108128711	Splice_Site	G	T	p.Q498_splice
LUSC	TCGA-22-5472-01	ARPP21	ENST00000417925.1,ENST00000458225.1,ENST00000187397.4,ENST00000481854.1	chr3	35758792:35758849:35763096:35763326:35770794:35770828,	35763097	35763326	35763327	35763327	Splice_Site	G	T	p.G375_splice
LUSC	TCGA-22-5472-01	THOC5	ENST00000397871.1,ENST00000397873.2,ENST00000397872.1,ENST00000440771.1,ENST00000490103.1,ENST00000455450.1,ENST00000428374.1,ENST00000475187.1,ENST00000442555.1	chr22	29935432:29935465:29938847:29938945:29939417:29939531,	29938848	29938945	29938946	29938946	Splice_Site	C	A	p.A119_splice
LUSC	TCGA-22-5473-01	SGCD	ENST00000435422.3,ENST00000337851.4,ENST00000517913.1,ENST00000447401.1	chr5	156016240:156016328:156021941:156022061:156074473:156074546,	156021942	156022061	156021941	156021941	Splice_Site	G	T	p.G128_splice
LUSC	TCGA-22-5473-01	CASD1	ENST00000297273.4	chr7	94168278:94168368:94173722:94173842:94174856:94175013,	94173723	94173842	94173843	94173843	Splice_Site	G	T	p.Q492_splice
LUSC	TCGA-22-5473-01	BAIAP2L1	ENST00000462558.1	chr7	97984353:97984440:97991668:97991744:98030113:98030380,	97991669	97991744	97991745	97991745	Splice_Site	C	G	p.N18_splice
LUSC	TCGA-22-5473-01	CFTR	ENST00000446805.1,ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117144306:117144417:117149087:117149196:117170952:117171032,	117149088	117149196	117149087	117149087	Splice_Site	G	T	p.R55_splice
LUSC	TCGA-22-5473-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67178815:67178949:67181617:67181784:67183821:67184020,	67181618	67181784	67181617	67181617	Splice_Site	C	T	p.G833_splice
LUSC	TCGA-22-5478-01	ABAT	ENST00000425191.2,ENST00000562115.1,ENST00000569156.1	chr16	8807475:8807722:8829555:8829666:8839857:8839882,8814678:8814791:8829555:8829666:8839857:8839882,	8829556	8829666	8829667	8829667	Splice_Site	G	T	p.G24_splice
LUSC	TCGA-22-5480-01	PRIM2	ENST00000389488.2,ENST00000607273.1	chr6	57467079:57467206:57472358:57472441:57498966:57499035,	57472359	57472441	57472357	57472357	Splice_Site	A	T	p.G382_splice
LUSC	TCGA-22-5485-01	CDK20	ENST00000375871.4	chr9	90581796:90582574:90584108:90584264:90585690:90585812,	90584109	90584264	90584108	90584108	Splice_Site	C	A	p.K281_splice
LUSC	TCGA-22-5489-01	RABGAP1L	ENST00000357444.6,ENST00000251507.4,ENST00000457696.1,ENST00000367689.3,ENST00000367690.1	chr1	174274123:174274265:174340116:174340210:174363132:174363283,	174340117	174340210	174340115	174340115	Splice_Site	A	G	p.E489_splice
LUSC	TCGA-22-5489-01	ALS2	ENST00000264276.6	chr2	202580394:202580562:202582799:202582933:202587765:202587843,	202582800	202582933	202582799	202582799	Splice_Site	C	A	p.F1279_splice
LUSC	TCGA-22-5489-01	GNPTAB	ENST00000299314.7	chr12	102159868:102160072:102161814:102161938:102163798:102163969,	102161815	102161938	102161813	102161813	Splice_Site	A	G	p.G470_splice
LUSC	TCGA-22-5489-01	PSEN1	ENST00000553855.1,ENST00000394164.1,ENST00000261970.3,ENST00000324501.5,ENST00000406768.1,ENST00000557511.1,ENST00000555386.1,ENST00000357710.4,ENST00000344094.3	chr14	73640273:73640415:73653560:73653628:73659351:73659572,	73653561	73653628	73653560	73653560	Splice_Site	G	C	p.V161_splice
LUSC	TCGA-22-5491-01	PTPRN	ENST00000295718.2,ENST00000462351.1,ENST00000443981.1,ENST00000497977.1,ENST00000409251.3,ENST00000423636.2	chr2	220155547:220155612:220156191:220156245:220159696:220159750,	220156192	220156245	220156190	220156190	Splice_Site	A	T	p.S910_splice
LUSC	TCGA-22-5491-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128404859:128404969:128410834:128411137:128505576:128505870,	128410835	128411137	128411138	128411138	Splice_Site	C	T	p.E388_splice
LUSC	TCGA-22-5491-01	POLE	ENST00000320574.5,ENST00000537064.1	chr12	133256539:133256632:133256763:133256808:133257192:133257273,	133256764	133256808	133256810	133256810	Splice_Site	T	A	p.V96_splice
LUSC	TCGA-22-5492-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229593907:229594043:229596357:229596516:229599289:229599423,	229596358	229596516	229596517	229596517	Splice_Site	C	G	p.N896_splice
LUSC	TCGA-22-5492-01	NDUFA10	ENST00000485344.2,ENST00000476216.1,ENST00000252711.2	chr2	240900580:240900603:240929490:240929599:240944626:240944712,	240929491	240929599	240929490	240929490	Splice_Site	C	T	p.E363_splice
LUSC	TCGA-22-5492-01	AGXT	ENST00000307503.3,ENST00000470255.1	chr2	241816953:241817049:241817438:241817567:241818130:241818537,	241817439	241817567	241817438	241817438	Splice_Site	G	T	p.A315_splice
LUSC	TCGA-22-5492-01	C8orf34	ENST00000325233.3	chr8	69445254:69445384:69552610:69552746:69621228:69621314,69537693:69537890:69552610:69552746:69621228:69621314,	69552611	69552746	69552748	69552748	Splice_Site	T	A	p.R414_splice
LUSC	TCGA-22-5492-01	ATP11A	ENST00000466946.1,ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113439485:113439571:113459270:113459360:113460526:113460607,	113459271	113459360	113459361	113459361	Splice_Site	G	T	p.Q84_splice
LUSC	TCGA-33-4532-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72961981:72962077:72962528:72962633:72962834:72962954,	72962529	72962633	72962528	72962528	Splice_Site	G	C	p.I889_splice
LUSC	TCGA-33-4532-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44061715:44061844:44062447:44062527:44062720:44062778,	44062448	44062527	44062447	44062447	Splice_Site	G	T	p.L423_splice
LUSC	TCGA-33-4532-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577447	48577447	Splice_Site	G	A	p.D877_splice
LUSC	TCGA-33-4532-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436967	72436967	Splice_Site	G	T	p.A396_splice
LUSC	TCGA-33-4533-01	TTYH3	ENST00000407643.1,ENST00000403167.1,ENST00000258796.7	chr7	2691820:2691876:2692551:2692644:2695725:2695818,	2692552	2692644	2692645	2692645	Splice_Site	G	T	p.K340_splice
LUSC	TCGA-33-4538-01	KCNT2	ENST00000610076.1	chr1	196309618:196309700:196311208:196311379:196342269:196342378,	196311209	196311379	196311207	196311207	Splice_Site	A	C	p.K518_splice
LUSC	TCGA-33-4538-01	KCNT2	ENST00000294725.9,ENST00000367433.5,ENST00000451324.2,ENST00000498426.1	chr1	196309618:196309700:196311208:196311358:196342269:196342378,	196311209	196311358	196311207	196311207	Splice_Site	A	C	p.K518_splice
LUSC	TCGA-33-4538-01	TTC27	ENST00000317907.4	chr2	32853222:32853447:32855589:32855767:32858942:32859072,	32855590	32855767	32855589	32855589	Splice_Site	G	T	p.E30_splice
LUSC	TCGA-33-4547-01	BAZ2A	ENST00000551812.1,ENST00000549884.1	chr12	57007736:57007922:57008797:57009391:57011178:57011316,	57008798	57009391	57008797	57008797	Splice_Site	C	A	p.E246_splice
LUSC	TCGA-33-4547-01	BAZ2A	ENST00000379441.3,ENST00000179765.5	chr12	57007736:57007922:57008797:57008912:57009002:57009391,	57008798	57008912	57008797	57008797	Splice_Site	C	A	p.E246_splice
LUSC	TCGA-33-4547-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35124114:35124211:35127601:35127702:35134226:35134290,	35127602	35127702	35127600	35127600	Splice_Site	A	T	p.S208_splice
LUSC	TCGA-33-4566-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21139650:21139732:21143884:21144031:21151592:21151691,	21143885	21144031	21144032	21144032	Splice_Site	C	G	p.K1401_splice
LUSC	TCGA-33-4566-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37208152:37208937:37215788:37216002:37217790:37217939,	37215789	37216002	37215788	37215788	Splice_Site	C	A	p.R1971_splice
LUSC	TCGA-33-4566-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2,ENST00000430789.1	chr2	100288999:100289051:100343538:100343590:100360565:100360602,	100343539	100343590	100343538	100343538	Splice_Site	C	T	p.S389_splice
LUSC	TCGA-33-4566-01	MDH1B	ENST00000432911.1,ENST00000392214.2,ENST00000471988.1,ENST00000436472.1,ENST00000454776.2	chr2	207621960:207622095:207625624:207625737:207629973:207630010,	207625625	207625737	207625738	207625738	Splice_Site	C	A	p.G8_splice
LUSC	TCGA-33-4566-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47734730:47734790:47742767:47742892:47747898:47748016,	47742768	47742892	47742767	47742767	Splice_Site	C	A	p.V389_splice
LUSC	TCGA-33-4566-01	GABBR1	ENST00000377012.4,ENST00000376977.3,ENST00000355973.3,ENST00000377034.4,ENST00000472823.1,ENST00000494877.1,ENST00000377016.4,ENST00000491829.1	chr6	29573345:29573473:29574167:29574261:29574673:29574781,	29574168	29574261	29574167	29574167	Splice_Site	C	A	p.G771_splice
LUSC	TCGA-33-4566-01	DCBLD1	ENST00000296955.8,ENST00000338728.5,ENST00000533453.1	chr6	117853422:117853556:117858347:117858388:117859782:117859998,	117858348	117858388	117858346	117858346	Splice_Site	A	T	p.D240_splice
LUSC	TCGA-33-4566-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101758486:101758553:101801839:101801888:101813725:101813830,	101801840	101801888	101801838	101801838	Splice_Site	A	G	p.K236_splice
LUSC	TCGA-33-4566-01	PTPRD	ENST00000381196.4,ENST00000356435.5,ENST00000360074.4,ENST00000540109.1	chr9	8492861:8492979:8497241:8497268:8499646:8499840,	8497242	8497268	8497241	8497241	Splice_Site	C	A	p.H783_splice
LUSC	TCGA-33-4566-01	CENPP	ENST00000375587.3	chr9	95094451:95094633:95099822:95099911:95107980:95108069,	95099823	95099911	95099822	95099822	Splice_Site	G	T	p.S97_splice
LUSC	TCGA-33-4566-01	ENTPD5	ENST00000557325.1,ENST00000553284.1,ENST00000334696.6	chr14	74443035:74443115:74443726:74443762:74444001:74444077,	74443727	74443762	74443726	74443726	Splice_Site	C	G	p.G185_splice
LUSC	TCGA-33-4566-01	ETFA	ENST00000560044.1,ENST00000557943.1,ENST00000267950.8,ENST00000559602.1,ENST00000560899.1,ENST00000433983.2,ENST00000560726.1,ENST00000559973.1,ENST00000559075.1	chr15	76523718:76523739:76566752:76566835:76576097:76576166,	76566753	76566835	76566836	76566836	Splice_Site	C	T	p.V245_splice
LUSC	TCGA-33-4566-01	PHB	ENST00000504124.1,ENST00000300408.3,ENST00000508009.1,ENST00000419140.2	chr17	47482548:47482566:47484120:47484216:47486403:47486520,	47484121	47484216	47484217	47484217	Splice_Site	C	G	p.T171_splice
LUSC	TCGA-33-4566-01	TBC1D22A	ENST00000407381.3,ENST00000441162.1,ENST00000406733.1,ENST00000394449.2,ENST00000337137.4,ENST00000355704.3	chr22	47432966:47433094:47507403:47507499:47569140:47569726,	47507404	47507499	47507500	47507500	Splice_Site	G	T	p.Q475_splice
LUSC	TCGA-33-4566-01	CSF2RA	ENST00000361536.3,ENST00000355805.2,ENST00000355432.3,ENST00000412290.1,ENST00000381529.3,ENST00000486791.1,ENST00000417535.2,ENST00000381524.3,ENST00000381509.3,ENST00000381500.1,ENST00000432318.2,ENST00000419094.1	chrX	1401578:1401672:1404670:1404813:1407411:1407533,	1404671	1404813	1404669	1404669	Splice_Site	A	T	p.D26_splice
LUSC	TCGA-33-4583-01	TATDN1	ENST00000519548.1	chr8	125528164:125528271:125531058:125531122:125535177:125535243,125528164:125528271:125531058:125531122:125551265:125551297,	125531059	125531122	125531058	125531058	Splice_Site	C	A	p.G68_splice
LUSC	TCGA-33-4586-01	COL27A1	ENST00000356083.3,ENST00000494090.2	chr9	117050981:117051035:117051193:117051247:117051521:117051575,	117051194	117051247	117051248	117051248	Splice_Site	G	A	p.P1384_splice
LUSC	TCGA-33-4586-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470345	77470345	Splice_Site	G	T	p.G258_splice
LUSC	TCGA-33-6737-01	PLEKHG1	ENST00000358517.2,ENST00000475490.1,ENST00000367328.1	chr6	151116991:151117038:151121854:151122005:151125745:151125877,	151121855	151122005	151121854	151121854	Splice_Site	G	A	p.R269_splice
LUSC	TCGA-33-6737-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000490851.1,ENST00000401921.1,ENST00000523867.1	chr7	18868783:18868839:18869083:18869171:18875089:18875209,	18869084	18869171	18869172	18869172	Splice_Site	G	T	p.L822_splice
LUSC	TCGA-34-2596-01	CEP72	ENST00000264935.5	chr5	633883:634062:635486:635699:637631:637933,	635487	635699	635485	635485	Splice_Site	A	G	p.E231_splice
LUSC	TCGA-34-2600-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189861123:189861222:189861890:189861944:189862061:189862112,	189861891	189861944	189861890	189861890	Splice_Site	G	T	p.G588_splice
LUSC	TCGA-34-2600-01	MTMR14	ENST00000296003.4	chr3	9730627:9730766:9739394:9739550:9743473:9743608,9731647:9731827:9739394:9739550:9743473:9743608,	9739395	9739550	9739394	9739394	Splice_Site	G	A	p.R538_splice
LUSC	TCGA-34-2600-01	NAPG	ENST00000582472.2,ENST00000582978.1,ENST00000322897.6	chr18	10530766:10530834:10532707:10532792:10533532:10533550,	10532708	10532792	10532793	10532793	Splice_Site	G	A	p.A70_splice
LUSC	TCGA-34-2600-01	SUGP1	ENST00000247001.5,ENST00000588731.2,ENST00000587119.1,ENST00000586387.3	chr19	19407990:19408153:19413073:19413197:19414156:19414215,	19413074	19413197	19413072	19413072	Splice_Site	A	T	p.S296_splice
LUSC	TCGA-34-2600-01	SUGP1	ENST00000589144.1	chr19	19407990:19408153:19413073:19413252:19414156:19414215,	19413074	19413252	19413072	19413072	Splice_Site	A	T	p.S296_splice
LUSC	TCGA-34-2608-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000583382.1,ENST00000577730.1,ENST00000585315.1,ENST00000584337.1	chr16	61854829:61855017:61858915:61859083:61891022:61891142,	61858916	61859083	61858915	61858915	Splice_Site	C	T	p.S279_splice
LUSC	TCGA-34-5231-01	POSTN	ENST00000379742.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4	chr13	38139384:38139633:38143436:38143520:38143880:38143927,38138655:38138697:38143436:38143520:38143880:38143927,	38143437	38143520	38143436	38143436	Splice_Site	C	T	p.D811_splice
LUSC	TCGA-34-5232-01	ATP6AP2	ENST00000378438.4	chrX	40448244:40448368:40450485:40450617:40456500:40456596,	40450486	40450617	40450618	40450618	Splice_Site	G	T	p.N100_splice
LUSC	TCGA-34-5234-01	POLE2	ENST00000554396.1,ENST00000539565.2,ENST00000556584.1,ENST00000216367.5	chr14	50122388:50122561:50130032:50130105:50131343:50131381,	50130033	50130105	50130032	50130032	Splice_Site	C	G	p.R252_splice
LUSC	TCGA-34-5239-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	A	p.T125_splice
LUSC	TCGA-34-5239-01	TMEM107	ENST00000431792.2	chr17	8079074:8079175:8079276:8079344:8079517:8079634,8077488:8077590:8079276:8079344:8079517:8079634,	8079277	8079344	8079345	8079345	Splice_Site	C	A	p.D30_splice
LUSC	TCGA-34-5927-01	DLD	ENST00000440410.1	chr7	107533644:107533723:107542182:107542262:107543922:107543992,	107542183	107542262	107542181	107542181	Splice_Site	A	G	p.I40_splice
LUSC	TCGA-34-5929-01	WDR60	ENST00000467220.1,ENST00000444851.1,ENST00000407559.3	chr7	158719092:158719154:158719682:158719734:158723145:158723206,	158719683	158719734	158719682	158719682	Splice_Site	G	A	p.V812_splice
LUSC	TCGA-34-5929-01	LSM14A	ENST00000540746.2,ENST00000433627.5	chr19	34710613:34710782:34712411:34712643:34718269:34718522,34710613:34710782:34712411:34712643:34717312:34717369,	34712412	34712643	34712411	34712411	Splice_Site	G	C	p.R379_splice
LUSC	TCGA-37-3789-01	YIPF4	ENST00000238831.4	chr2	32515558:32515705:32517245:32517417:32523302:32523380,	32517246	32517417	32517245	32517245	Splice_Site	G	T	p.L78_splice
LUSC	TCGA-37-4133-01	MSR1	ENST00000445506.2,ENST00000262101.5	chr8	15977926:15978115:16001066:16001120:16007739:16007820,	16001067	16001120	16001066	16001066	Splice_Site	C	T	p.T363_splice
LUSC	TCGA-37-4141-01	C12orf40	ENST00000324616.5,ENST00000398716.1,ENST00000405531.3	chr12	40034756:40034796:40037580:40037719:40040130:40040263,	40037581	40037719	40037721	40037721	Splice_Site	T	A	p.E68_splice
LUSC	TCGA-37-5819-01	FRRS1	ENST00000414213.1,ENST00000287474.5	chr1	100195205:100195304:100203641:100203824:100206348:100206496,	100203642	100203824	100203641	100203641	Splice_Site	C	A	p.M253_splice
LUSC	TCGA-37-5819-01	UBE2T	ENST00000367274.4	chr1	202300964:202301088:202302137:202302221:202302364:202302463,	202302138	202302221	202302223	202302223	Splice_Site	T	A	p.S129_splice
LUSC	TCGA-37-5819-01	PDCL3	ENST00000264254.6	chr2	101186039:101186183:101188051:101188260:101192815:101193197,	101188052	101188260	101188050	101188050	Splice_Site	A	G	p.G123_splice
LUSC	TCGA-37-5819-01	RABL3	ENST00000483733.1	chr3	120413016:120413071:120417269:120417420:120424846:120424961,120409295:120409334:120417269:120417420:120424846:120424961,	120417270	120417420	120417269	120417269	Splice_Site	C	A	p.L178_splice
LUSC	TCGA-37-5819-01	RABL3	ENST00000473654.1	chr3	120413016:120413071:120417269:120417367:120424846:120424961,	120417270	120417367	120417269	120417269	Splice_Site	C	A	p.L178_splice
LUSC	TCGA-37-5819-01	SEPT7	ENST00000350320.6,ENST00000425198.1,ENST00000399035.3,ENST00000435235.1,ENST00000399034.2,ENST00000494488.2,ENST00000469679.2	chr7	35872407:35872510:35903161:35903268:35912275:35912376,	35903162	35903268	35903269	35903269	Splice_Site	G	T	p.Q90_splice
LUSC	TCGA-37-5819-01	DLG2	ENST00000537455.1,ENST00000330014.6,ENST00000376106.3,ENST00000531015.1	chr11	83874503:83874554:83962280:83962334:83984193:83984323,	83962281	83962334	83962335	83962335	Splice_Site	C	A	p.A69_splice
LUSC	TCGA-37-5819-01	YLPM1	ENST00000238571.3,ENST00000547879.1,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7,ENST00000554107.1	chr14	75283940:75283980:75284933:75285017:75287759:75287840,	75284934	75285017	75284933	75284933	Splice_Site	G	A	p.M1983_splice
LUSC	TCGA-37-5819-01	ITPK1	ENST00000557309.1,ENST00000267615.6,ENST00000556603.2,ENST00000555553.1,ENST00000553452.1,ENST00000354313.3	chr14	93460224:93460342:93483020:93483146:93581413:93581529,93460224:93460342:93483020:93483146:93542939:93542960,	93483021	93483146	93483148	93483148	Splice_Site	T	A	p.L41_splice
LUSC	TCGA-39-5016-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195693	172195693	Splice_Site	C	G	p.E202_splice
LUSC	TCGA-39-5016-01	CYP3A43	ENST00000312017.5,ENST00000222382.5,ENST00000434806.1,ENST00000354829.2	chr7	99436742:99436795:99441765:99441865:99445110:99445224,	99441766	99441865	99441866	99441866	Splice_Site	G	A	p.M106_splice
LUSC	TCGA-39-5016-01	DMKN	ENST00000440396.1,ENST00000424570.2,ENST00000451297.2,ENST00000339686.3,ENST00000447113.2,ENST00000418261.1	chr19	36001085:36001154:36002312:36002495:36002664:36002715,	36002313	36002495	36002311	36002311	Splice_Site	A	T	p.W306_splice
LUSC	TCGA-39-5019-01	FXR2	ENST00000250113.7	chr17	7499141:7499312:7504726:7504843:7506226:7506320,	7504727	7504843	7504844	7504844	Splice_Site	C	T	p.S182_splice
LUSC	TCGA-39-5021-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225343019:225343062:225346608:225346795:225360548:225360623,	225346609	225346795	225346608	225346608	Splice_Site	C	T	p.V683_splice
LUSC	TCGA-39-5024-01	PLRG1	ENST00000499023.2,ENST00000393905.2,ENST00000504341.1	chr4	155466987:155467075:155467274:155467365:155468162:155468216,	155467275	155467365	155467273	155467273	Splice_Site	A	T	p.K135_splice
LUSC	TCGA-39-5024-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576928	7576928	Splice_Site	T	A	p.A307_splice
LUSC	TCGA-39-5024-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41077624:41077850:41078354:41078484:41082469:41082655,	41078355	41078484	41078486	41078486	Splice_Site	T	A	p.G2189_splice
LUSC	TCGA-39-5027-01	IL20RB	ENST00000329582.4,ENST00000475972.1	chr3	136708282:136708407:136714255:136714398:136728954:136729921,136710779:136710930:136714255:136714398:136728954:136729921,	136714256	136714398	136714254	136714254	Splice_Site	A	T	p.G228_splice
LUSC	TCGA-39-5028-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826502	129826502	Splice_Site	T	A	p.P2901_splice
LUSC	TCGA-39-5031-01	FXR1	ENST00000357559.4,ENST00000491062.1,ENST00000445140.2,ENST00000468861.1,ENST00000472339.1,ENST00000480918.1,ENST00000475315.1,ENST00000305586.7	chr3	180669117:180669256:180671549:180671628:180675606:180675716,	180671550	180671628	180671549	180671549	Splice_Site	G	A	p.S268_splice
LUSC	TCGA-39-5031-01	KTN1	ENST00000438792.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000395314.3,ENST00000459737.1,ENST00000554890.1	chr14	56117045:56117136:56117286:56117355:56118607:56118645,	56117287	56117355	56117286	56117286	Splice_Site	G	T	p.D833_splice
LUSC	TCGA-39-5031-01	MICAL3	ENST00000429452.1,ENST00000444520.1,ENST00000400561.2,ENST00000383094.3,ENST00000585038.1,ENST00000414725.2,ENST00000441493.2,ENST00000461307.1,ENST00000207726.7,ENST00000495076.1	chr22	18371799:18371996:18374250:18374398:18376573:18376670,	18374251	18374398	18374399	18374399	Splice_Site	C	G	p.E516_splice
LUSC	TCGA-39-5035-01	CEP78	ENST00000459817.2	chr9	80869758:80869880:80879065:80879232:80880287:80880317,	80879066	80879232	80879233	80879233	Splice_Site	G	A	p.G543_splice
LUSC	TCGA-39-5035-01	HNRNPH3	ENST00000265866.7,ENST00000354695.5,ENST00000486854.1,ENST00000467249.1	chr10	70096955:70097090:70097614:70097753:70098259:70098399,	70097615	70097753	70097754	70097754	Splice_Site	G	T	p.R84_splice
LUSC	TCGA-39-5036-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183866680:183866771:183866854:183866997:183867701:183867758,	183866855	183866997	183866998	183866998	Splice_Site	C	T	p.T124_splice
LUSC	TCGA-39-5036-01	HLCS	ENST00000336648.4	chr21	38309513:38309692:38311131:38311294:38334335:38334470,38309513:38309692:38311131:38311294:38318308:38318454,	38311132	38311294	38311131	38311131	Splice_Site	C	T	p.S18_splice
LUSC	TCGA-39-5037-01	EVI5L	ENST00000597440.1,ENST00000270530.4,ENST00000538904.2	chr19	7913806:7914031:7914141:7914216:7914882:7915008,	7914142	7914216	7914140	7914140	Splice_Site	A	G	p.A185_splice
LUSC	TCGA-39-5039-01	SLC39A11	ENST00000583146.1,ENST00000580557.1,ENST00000255559.3,ENST00000579732.1,ENST00000542342.2	chr17	70943890:70944014:71027694:71027853:71080946:71080985,	71027695	71027853	71027694	71027694	Splice_Site	C	A	p.L102_splice
LUSC	TCGA-39-5039-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17425146:17425198:17426742:17426804:17430354:17430496,	17426743	17426804	17426741	17426741	Splice_Site	A	T	p.I46_splice
LUSC	TCGA-43-2578-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000308466.8,ENST00000346145.4,ENST00000477756.1,ENST00000339251.5,ENST00000463781.3,ENST00000415455.1,ENST00000475231.1,ENST00000462323.1,ENST00000349607.4	chr3	195479921:195480101:195481083:195481243:195484017:195484199,	195481084	195481243	195481244	195481244	Splice_Site	C	A	p.V5057_splice
LUSC	TCGA-43-2578-01	EPB41L3	ENST00000341928.2,ENST00000342933.3	chr18	5410564:5410618:5415816:5416377:5419709:5419793,	5415817	5416377	5416379	5416379	Splice_Site	T	A	p.S503_splice
LUSC	TCGA-43-2578-01	SPRED3	ENST00000586301.1,ENST00000587013.1,ENST00000338502.4	chr19	38882851:38882928:38885282:38885426:38886119:38886788,	38885283	38885426	38885282	38885282	Splice_Site	G	T	p.S142_splice
LUSC	TCGA-43-3394-01	COL1A1	ENST00000225964.5	chr17	48266528:48266636:48266737:48266899:48267039:48267093,	48266738	48266899	48266736	48266736	Splice_Site	A	G	p.A943_splice
LUSC	TCGA-43-3394-01	OCRL	ENST00000357121.5,ENST00000371113.4	chrX	128722862:128722990:128723821:128723933:128724122:128724610,	128723822	128723933	128723821	128723821	Splice_Site	G	T	p.V824_splice
LUSC	TCGA-43-3920-01	TAGLN2	ENST00000320307.4,ENST00000368097.4,ENST00000368096.1,ENST00000397334.2,ENST00000478033.1	chr1	159889063:159889166:159889450:159889625:159890119:159890226,	159889451	159889625	159889626	159889626	Splice_Site	C	A	p.V61_splice
LUSC	TCGA-43-5668-01	SLC9C2	ENST00000367714.3	chr1	173567044:173567171:173569255:173569356:173570788:173570855,	173569256	173569356	173569255	173569255	Splice_Site	C	A	p.E76_splice
LUSC	TCGA-43-5668-01	SPATA17	ENST00000366933.4	chr1	217824438:217824520:217842374:217842425:217856599:217856703,	217842375	217842425	217842374	217842374	Splice_Site	G	C	p.V81_splice
LUSC	TCGA-43-5668-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000415140.2,ENST00000404816.2,ENST00000354476.3,ENST00000402934.1	chr2	33540210:33540336:33567904:33568030:33572433:33572476,	33567905	33568030	33567903	33567903	Splice_Site	A	C	p.D1244_splice
LUSC	TCGA-43-5668-01	MICALL2	ENST00000472100.1,ENST00000297508.7	chr7	1488255:1488397:1489875:1489924:1498819:1499001,	1489876	1489924	1489875	1489875	Splice_Site	C	A	p.L64_splice
LUSC	TCGA-43-5668-01	TGDS	ENST00000261296.5	chr13	95226307:95227106:95228567:95228665:95229624:95229683,	95228568	95228665	95228567	95228567	Splice_Site	C	T	p.I328_splice
LUSC	TCGA-43-5668-01	FECH	ENST00000585494.1,ENST00000262093.5,ENST00000382873.3,ENST00000591977.1	chr18	55218546:55218606:55221491:55221656:55222076:55222184,	55221492	55221656	55221491	55221491	Splice_Site	C	A	p.E359_splice
LUSC	TCGA-43-6143-01	SAFB	ENST00000454510.1,ENST00000589863.1,ENST00000538656.1,ENST00000588852.1,ENST00000592224.1,ENST00000433404.1,ENST00000292123.5	chr19	5664139:5664170:5664407:5664450:5667056:5667175,	5664408	5664450	5664451	5664451	Splice_Site	G	T	p.Q778_splice
LUSC	TCGA-43-6647-01	PMS2	ENST00000382321.4,ENST00000441476.2,ENST00000406569.3,ENST00000265849.7	chr7	6036956:6037054:6038738:6038906:6042083:6042267,	6038739	6038906	6038907	6038907	Splice_Site	C	A	p.E180_splice
LUSC	TCGA-43-6647-01	FTH1	ENST00000533138.1	chr11	61732309:61732363:61732458:61732987:61734783:61734843,	61732459	61732987	61732988	61732988	Splice_Site	C	G	p.S39_splice
LUSC	TCGA-43-6647-01	FTH1	ENST00000530019.1	chr11	61732471:61732584:61732840:61732987:61734783:61734843,61727293:61727376:61732840:61732987:61734783:61734843,	61732841	61732987	61732988	61732988	Splice_Site	C	G	p.S39_splice
LUSC	TCGA-43-6647-01	PIGL	ENST00000498772.2,ENST00000581006.1,ENST00000584797.1,ENST00000395844.4,ENST00000225609.5,ENST00000477745.1	chr17	16120559:16120775:16137284:16137384:16203201:16203292,	16137285	16137384	16137283	16137283	Splice_Site	A	T	p.G79_splice
LUSC	TCGA-43-6770-01	PACRGL	ENST00000444671.2,ENST00000538990.1	chr4	20706282:20706437:20715054:20715162:20728907:20729020,	20715055	20715162	20715163	20715163	Splice_Site	G	T	p.S203_splice
LUSC	TCGA-43-6770-01	ORC5	ENST00000422497.1,ENST00000297431.4,ENST00000545943.1,ENST00000447452.2	chr7	103808920:103808973:103824390:103824481:103824570:103824619,	103824391	103824481	103824482	103824482	Splice_Site	C	A	p.A245_splice
LUSC	TCGA-43-6770-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32364059:32364197:32366522:32366645:32380904:32381075,	32366523	32366645	32366646	32366646	Splice_Site	C	T	p.A1776_splice
LUSC	TCGA-46-3765-01	GOLPH3L	ENST00000427665.1,ENST00000271732.3	chr1	150620912:150621224:150634289:150634404:150667131:150667326,150620912:150621224:150634289:150634404:150636107:150636239,	150634290	150634404	150634405	150634405	Splice_Site	C	A	p.V106_splice
LUSC	TCGA-46-3765-01	ME1	ENST00000369705.3	chr6	84061782:84061858:84108085:84108235:84140595:84140764,84061782:84061858:84108085:84108235:84117486:84117620,	84108086	84108235	84108236	84108236	Splice_Site	C	A	p.R71_splice
LUSC	TCGA-46-3765-01	TRMT11	ENST00000334379.5,ENST00000453993.2,ENST00000368332.3	chr6	126320685:126320759:126329537:126329618:126332398:126332420,	126329538	126329618	126329537	126329537	Splice_Site	G	T	p.G227_splice
LUSC	TCGA-46-3768-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132166741:132166783:132169490:132169691:132172141:132172348,	132169491	132169691	132169490	132169490	Splice_Site	G	C	p.R113_splice
LUSC	TCGA-46-3768-01	TMEM8B	ENST00000377991.4,ENST00000377988.2	chr9	35852823:35852970:35853137:35853254:35853501:35854843,	35853138	35853254	35853137	35853137	Splice_Site	G	T	p.V323_splice
LUSC	TCGA-46-3769-01	HADHA	ENST00000380649.3	chr2	26420559:26420646:26424017:26424189:26426930:26427065,	26424018	26424189	26424190	26424190	Splice_Site	C	G	p.G407_splice
LUSC	TCGA-46-3769-01	SIDT1	ENST00000463226.1,ENST00000393830.3,ENST00000264852.4	chr3	113327265:113327383:113329854:113329991:113330932:113331041,	113329855	113329991	113329854	113329854	Splice_Site	G	C	p.D574_splice
LUSC	TCGA-46-3769-01	KLHL32	ENST00000369261.4,ENST00000544166.1,ENST00000369254.1	chr6	97423872:97424053:97489367:97489475:97512503:97512602,	97489368	97489475	97489367	97489367	Splice_Site	G	T	p.A69_splice
LUSC	TCGA-46-3769-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157387929:157388007:157396693:157396767:157414053:157414201,	157396694	157396767	157396693	157396693	Splice_Site	C	T	p.I806_splice
LUSC	TCGA-46-3769-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181719	100181719	Splice_Site	A	T	p.F112_splice
LUSC	TCGA-46-3769-01	PLAUR	ENST00000601723.1	chr19	44156415:44156523:44159590:44159725:44160630:44160725,44152731:44153295:44159590:44159725:44160630:44160725,	44159591	44159725	44159726	44159726	Splice_Site	C	T	p.G158_splice
LUSC	TCGA-46-6025-01	ITLN2	ENST00000368029.3,ENST00000494442.1	chr1	160914883:160915082:160917718:160917822:160919835:160919956,	160917719	160917822	160917718	160917718	Splice_Site	C	G	p.H275_splice
LUSC	TCGA-46-6026-01	RALA	ENST00000005257.2,ENST00000434466.1	chr7	39726285:39726380:39729980:39730189:39736283:39736458,	39729981	39730189	39729980	39729980	Splice_Site	G	A	p.F39_splice
LUSC	TCGA-46-6026-01	ERI1	ENST00000520332.1,ENST00000250263.7,ENST00000523898.1,ENST00000519292.1,ENST00000520684.1	chr8	8869172:8869262:8873831:8873915:8875806:8875810,	8873832	8873915	8873831	8873831	Splice_Site	G	T	p.E167_splice
LUSC	TCGA-51-4080-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175293491:175293655:175299209:175299371:175304846:175304943,	175299210	175299371	175299209	175299209	Splice_Site	C	G	p.G1265_splice
LUSC	TCGA-51-4080-01	SPCS3	ENST00000507678.1,ENST00000503362.1	chr4	177245331:177245408:177248312:177248428:177249348:177249504,	177248313	177248428	177248312	177248312	Splice_Site	G	T	p.A99_splice
LUSC	TCGA-51-4080-01	KCNQ5	ENST00000414165.2,ENST00000403813.2,ENST00000370398.1,ENST00000355635.3,ENST00000370392.1,ENST00000402622.2	chr6	73331917:73332315:73713630:73713721:73751658:73751785,	73713631	73713721	73713722	73713722	Splice_Site	G	C	p.L163_splice
LUSC	TCGA-51-4080-01	ZNF765	ENST00000396408.3	chr19	53901195:53901283:53905317:53905444:53910950:53911351,	53905318	53905444	53905317	53905317	Splice_Site	G	C	p.G6_splice
LUSC	TCGA-51-4080-01	ZNF813	ENST00000396403.4	chr19	53987003:53987091:53989885:53990012:53993628:53993832,	53989886	53990012	53989885	53989885	Splice_Site	G	C	p.G6_splice
LUSC	TCGA-51-4081-01	LRP10	ENST00000546834.1,ENST00000359591.4	chr14	23341946:23341991:23342519:23342655:23344263:23344454,	23342520	23342655	23342656	23342656	Splice_Site	G	T	p.R72_splice
LUSC	TCGA-56-1622-01	KANSL1	ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1,ENST00000576870.1,ENST00000573682.1,ENST00000572218.1	chr17	44109530:44109665:44110445:44110558:44110768:44110826,	44110446	44110558	44110445	44110445	Splice_Site	C	G	p.R946_splice
LUSC	TCGA-56-1622-01	MRAP	ENST00000303645.5,ENST00000399784.2	chr21	33671282:33671388:33678950:33679050:33683994:33684601,	33678951	33679050	33678949	33678949	Splice_Site	A	G	p.H36_splice
LUSC	TCGA-56-6545-01	PDE3A	ENST00000359062.3,ENST00000544307.1	chr12	20799684:20799884:20801621:20801825:20803378:20803534,	20801622	20801825	20801620	20801620	Splice_Site	A	T	p.A856_splice
LUSC	TCGA-56-6545-01	RFWD3	ENST00000571750.1,ENST00000361070.4	chr16	74666420:74666571:74670243:74670475:74671753:74671868,	74670244	74670475	74670477	74670477	Splice_Site	T	G	p.D399_splice
LUSC	TCGA-56-6546-01	MARCH11	ENST00000332432.8	chr5	16067422:16067902:16090997:16091190:16177834:16177938,	16090998	16091190	16090997	16090997	Splice_Site	C	A	p.G296_splice
LUSC	TCGA-56-6546-01	GDA	ENST00000358399.3,ENST00000238018.4,ENST00000475764.1,ENST00000477618.1,ENST00000414671.1,ENST00000545168.1	chr9	74834394:74834422:74838035:74838143:74840592:74840700,	74838036	74838143	74838034	74838034	Splice_Site	A	T	p.Y203_splice
LUSC	TCGA-60-2698-01	MSH6	ENST00000445503.1	chr2	48010308:48010632:48018065:48018262:48023032:48023175,48010308:48010632:48018065:48018262:48025749:48025766,	48018066	48018262	48018263	48018263	Splice_Site	G	T	p.G153_splice
LUSC	TCGA-60-2698-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86676356:86676412:86679529:86679597:86681117:86681206,	86679530	86679597	86679528	86679528	Splice_Site	A	G	p.S897_splice
LUSC	TCGA-60-2698-01	HLA-A	ENST00000376806.5,ENST00000461903.1	chr6	29912143:29912174:29912276:29912411:29912835:29912868,	29912277	29912411	29912276	29912276	Splice_Site	G	C	p.E299_splice
LUSC	TCGA-60-2698-01	HLA-A	ENST00000496081.1	chr6	29911898:29912174:29912276:29912868:29913010:29913058,	29912277	29912868	29912276	29912276	Splice_Site	G	C	p.E299_splice
LUSC	TCGA-60-2698-01	HLA-A	ENST00000495183.1	chr6	29912143:29912174:29912276:29912393:29912835:29912868,29911898:29912174:29912276:29912393:29912839:29912868,	29912277	29912393	29912276	29912276	Splice_Site	G	C	p.E299_splice
LUSC	TCGA-60-2698-01	EGFR	ENST00000454757.2,ENST00000275493.2,ENST00000455089.1,ENST00000442591.1,ENST00000344576.2,ENST00000420316.2,ENST00000342916.3	chr7	55218986:55219055:55220238:55220357:55221703:55221845,	55220239	55220357	55220237	55220237	Splice_Site	A	G	p.L210_splice
LUSC	TCGA-60-2698-01	SEMA3C	ENST00000265361.3,ENST00000544525.1,ENST00000419255.2	chr7	80380584:80380652:80387646:80387804:80390931:80390973,	80387647	80387804	80387646	80387646	Splice_Site	C	T	p.R566_splice
LUSC	TCGA-60-2698-01	PARP4	ENST00000381989.3	chr13	25066558:25066732:25067733:25067871:25068710:25068860,	25067734	25067871	25067872	25067872	Splice_Site	C	T	p.L248_splice
LUSC	TCGA-60-2698-01	CCDC47	ENST00000403162.3,ENST00000225726.5,ENST00000582252.1	chr17	61841375:61841550:61842099:61842207:61843271:61843554,	61842100	61842207	61842099	61842099	Splice_Site	C	G	p.D124_splice
LUSC	TCGA-60-2698-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47863722:47863861:47864606:47864734:47865196:47865350,	47864607	47864734	47864606	47864606	Splice_Site	G	C	p.R3280_splice
LUSC	TCGA-60-2709-01	MFSD1	ENST00000480292.1,ENST00000415822.2,ENST00000392813.4,ENST00000484166.1,ENST00000465624.1,ENST00000264266.8,ENST00000471500.1	chr3	158538009:158538115:158539385:158539442:158539772:158539929,	158539386	158539442	158539385	158539385	Splice_Site	G	C	p.K337_splice
LUSC	TCGA-60-2709-01	NOX4	ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000375979.3,ENST00000529343.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000343727.5,ENST00000535633.1	chr11	89073293:89073339:89075241:89075361:89088129:89088211,	89075242	89075361	89075240	89075240	Splice_Site	A	G	p.L446_splice
LUSC	TCGA-60-2710-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000375420.3,ENST00000434513.1,ENST00000167825.4,ENST00000452522.1	chr1	17945833:17945940:17948358:17948436:17949490:17949670,	17948359	17948436	17948358	17948358	Splice_Site	G	T	p.V315_splice
LUSC	TCGA-60-2710-01	NUP210L	ENST00000368559.3,ENST00000271854.3	chr1	154031040:154031169:154033015:154033117:154033417:154033522,	154033016	154033117	154033014	154033014	Splice_Site	A	T	p.E950_splice
LUSC	TCGA-60-2710-01	FAM20C	ENST00000313766.5	chr7	195624:195732:208897:208976:286380:286473,	208898	208976	208896	208896	Splice_Site	A	C	p.A262_splice
LUSC	TCGA-60-2710-01	IL2RG	ENST00000456850.2,ENST00000374202.2,ENST00000276110.2	chrX	70328126:70328196:70328448:70328545:70329077:70329118,	70328449	70328545	70328447	70328447	Splice_Site	A	C	p.R285_splice
LUSC	TCGA-60-2713-01	NIT2	ENST00000465368.1	chr3	100059916:100060005:100064428:100065099:100067646:100067725,	100064429	100065099	100064427	100064427	Splice_Site	A	G	p.I113_splice
LUSC	TCGA-60-2713-01	NIT2	ENST00000480073.1,ENST00000497785.1,ENST00000394140.4	chr3	100059916:100060005:100064428:100064522:100065024:100065099,	100064429	100064522	100064427	100064427	Splice_Site	A	G	p.I113_splice
LUSC	TCGA-60-2713-01	TOPBP1	ENST00000260810.5	chr3	133331232:133331396:133335657:133335769:133336003:133336170,	133335658	133335769	133335770	133335770	Splice_Site	C	G	p.I1254_splice
LUSC	TCGA-60-2713-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000377246.3	chr13	78191937:78191997:78192138:78192195:78202081:78202144,	78192139	78192195	78192138	78192138	Splice_Site	G	A	p.S524_splice
LUSC	TCGA-60-2720-01	PDE2A	ENST00000541998.1,ENST00000536308.1,ENST00000543575.1	chr11	72302392:72302400:72316181:72316270:72319705:72319795,	72316182	72316270	72316271	72316271	Splice_Site	C	T	p.E79_splice
LUSC	TCGA-60-2721-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000442536.2,ENST00000355730.3,ENST00000458317.2,ENST00000457718.1,ENST00000450444.1	chr7	47451324:47451400:47453534:47453595:47454691:47454804,	47453535	47453595	47453597	47453597	Splice_Site	T	C	p.V196_splice
LUSC	TCGA-60-2721-01	ATXN2	ENST00000389153.4,ENST00000550236.1,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000392645.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111956052:111956231:111957682:111957880:111958685:111958749,	111957683	111957880	111957681	111957681	Splice_Site	A	T	p.R489_splice
LUSC	TCGA-60-2722-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000445419.2,ENST00000369751.2,ENST00000505222.1,ENST00000503631.1	chr6	82906014:82906163:82909857:82909970:82910303:82910425,	82909858	82909970	82909857	82909857	Splice_Site	C	A	p.G1009_splice
LUSC	TCGA-60-2722-01	ARHGAP12	ENST00000396144.4,ENST00000497103.1,ENST00000375245.4,ENST00000344936.2,ENST00000492028.1,ENST00000375250.5,ENST00000311380.4	chr10	32103186:32103289:32106715:32106814:32109314:32109416,	32106716	32106814	32106816	32106816	Splice_Site	T	A	p.L545_splice
LUSC	TCGA-60-2722-01	PRIM1	ENST00000548173.1,ENST00000550224.1,ENST00000338193.6	chr12	57140739:57140816:57144821:57144979:57145979:57146053,	57144822	57144979	57144981	57144981	Splice_Site	T	A	p.V35_splice
LUSC	TCGA-60-2722-01	ATXN3	ENST00000556374.1,ENST00000554214.1,ENST00000555816.1,ENST00000393287.5,ENST00000555958.1,ENST00000340660.6,ENST00000556315.1,ENST00000553287.1,ENST00000555381.1,ENST00000359366.5,ENST00000545170.1,ENST00000554040.1,ENST00000554592.1,ENST00000502250.1,ENST00000429774.2,ENST00000554672.1,ENST00000532032.1,ENST00000554491.1,ENST00000556082.1,ENST00000503767.1,ENST00000553309.1	chr14	92549469:92549579:92555073:92555161:92559595:92559662,92549469:92549602:92555073:92555161:92562436:92562481,92549469:92549602:92555073:92555161:92559595:92559662,	92555074	92555161	92555162	92555162	Splice_Site	C	T	p.W130_splice
LUSC	TCGA-60-2723-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6,ENST00000422127.1	chr1	228479598:228479862:228480223:228480487:228481053:228481317,	228480224	228480487	228480222	228480222	Splice_Site	A	T	p.A3535_splice
LUSC	TCGA-60-2723-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	A	p.E224_splice
LUSC	TCGA-60-2724-01	DPP4	ENST00000360534.3,ENST00000434918.2	chr2	162849792:162849894:162851470:162851544:162851809:162851882,	162851471	162851544	162851470	162851470	Splice_Site	C	T	p.M733_splice
LUSC	TCGA-60-2724-01	MORF4L1	ENST00000558830.1	chr15	79170581:79170601:79172853:79172921:79178482:79178503,79165384:79165399:79172853:79172921:79178482:79178503,	79172854	79172921	79172853	79172853	Splice_Site	G	A	p.C30_splice
LUSC	TCGA-60-2724-01	KLK15	ENST00000602114.1	chr19	51329011:51329204:51329876:51330013:51330133:51330417,51329011:51329204:51329876:51330013:51330251:51330417,	51329877	51330013	51330015	51330015	Splice_Site	T	A	p.V161_splice
LUSC	TCGA-60-2725-01	TMTC3	ENST00000266712.6	chr12	88584229:88584399:88586380:88586607:88588614:88593664,	88586381	88586607	88586608	88586608	Splice_Site	G	T	p.G645_splice
LUSC	TCGA-60-2726-01	CCNB1	ENST00000256442.5	chr5	68471223:68471364:68473065:68473176:68473350:68473457,	68473066	68473176	68473065	68473065	Splice_Site	G	C	p.T362_splice
LUSC	TCGA-60-2726-01	PHTF2	ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2	chr7	77558469:77558644:77567026:77567155:77569346:77569619,	77567027	77567155	77567025	77567025	Splice_Site	A	G	p.S447_splice
LUSC	TCGA-60-2726-01	ARMC4	ENST00000537576.1,ENST00000305242.5,ENST00000545014.1	chr10	28229491:28229734:28233150:28233360:28233744:28233891,	28233151	28233360	28233361	28233361	Splice_Site	C	A	p.I512_splice
LUSC	TCGA-63-5128-01	C8orf34	ENST00000521406.1,ENST00000539993.1,ENST00000518698.1,ENST00000337103.4	chr8	69699677:69699771:69728120:69728180:69730473:69730509,	69728121	69728180	69728119	69728119	Splice_Site	A	G	p.R517_splice
LUSC	TCGA-63-5128-01	GUCY1A2	ENST00000282249.2,ENST00000526355.2	chr11	106647164:106647308:106680718:106681204:106810185:106810904,	106680719	106681204	106681206	106681206	Splice_Site	T	C	p.V403_splice
LUSC	TCGA-63-5128-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79290437:79290550:79291060:79291167:79292084:79292153,	79291061	79291167	79291169	79291169	Splice_Site	T	A	p.G932_splice
LUSC	TCGA-63-5131-01	MAP4K3	ENST00000341681.5,ENST00000536018.1,ENST00000437545.1,ENST00000263881.3	chr2	39485488:39485581:39485659:39485728:39487746:39487918,	39485660	39485728	39485729	39485729	Splice_Site	C	T	p.D770_splice
LUSC	TCGA-63-5131-01	WNK4	ENST00000246914.5	chr17	40936439:40936597:40937114:40937203:40937283:40937500,	40937115	40937203	40937114	40937114	Splice_Site	G	C	p.G391_splice
LUSC	TCGA-63-6202-01	ZNF485	ENST00000374435.3,ENST00000361807.3,ENST00000430885.1	chr10	44104061:44104188:44104702:44104798:44111738:44111843,	44104703	44104798	44104702	44104702	Splice_Site	G	T	p.G51_splice
LUSC	TCGA-63-6202-01	FOXN3	ENST00000345097.4,ENST00000261302.5	chr14	89647133:89647150:89656727:89656793:89747293:89747350,	89656728	89656793	89656795	89656795	Splice_Site	T	C	p.D249_splice
LUSC	TCGA-63-6202-01	FOXN3	ENST00000553840.1	chr14	89647133:89647150:89656730:89656793:89747293:89747350,	89656731	89656793	89656795	89656795	Splice_Site	T	C	p.D249_splice
LUSC	TCGA-63-6202-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41823220:41823400:41826911:41827133:41827709:41827830,	41826912	41827133	41827134	41827134	Splice_Site	C	T	p.G181_splice
LUSC	TCGA-63-6202-01	GRIK5	ENST00000262895.3,ENST00000301218.4,ENST00000594528.1,ENST00000593562.1	chr19	42546703:42546907:42557753:42557861:42557976:42558077,	42557754	42557861	42557753	42557753	Splice_Site	C	A	p.L423_splice
LUSC	TCGA-63-6202-01	EFCAB6	ENST00000262726.7,ENST00000468552.1,ENST00000396231.2	chr22	44027984:44028118:44030981:44031096:44062983:44063152,	44030982	44031096	44031098	44031098	Splice_Site	T	C	p.V662_splice
LUSC	TCGA-66-2734-01	TTC27	ENST00000317907.4	chr2	32853222:32853447:32855589:32855767:32858942:32859072,	32855590	32855767	32855589	32855589	Splice_Site	G	T	p.E30_splice
LUSC	TCGA-66-2734-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000445419.2,ENST00000369751.2,ENST00000505222.1,ENST00000503631.1	chr6	82906014:82906163:82909857:82909970:82910303:82910425,	82909858	82909970	82909856	82909856	Splice_Site	A	C	p.G1009_splice
LUSC	TCGA-66-2734-01	COL20A1	ENST00000358894.6,ENST00000326996.6	chr20	61959303:61959339:61959430:61959479:61959682:61959831,	61959431	61959479	61959481	61959481	Splice_Site	T	A	p.S1205_splice
LUSC	TCGA-66-2744-01	MED28	ENST00000503945.2,ENST00000237380.7	chr4	17621523:17621590:17623209:17623322:17625223:17625417,	17623210	17623322	17623209	17623209	Splice_Site	G	T	p.G76_splice
LUSC	TCGA-66-2744-01	SLC41A2	ENST00000258538.3	chr12	105280070:105280217:105282810:105282955:105289051:105289123,	105282811	105282955	105282956	105282956	Splice_Site	C	A	p.V246_splice
LUSC	TCGA-66-2754-01	OSBPL6	ENST00000409045.3,ENST00000392505.2,ENST00000190611.4,ENST00000315022.2	chr2	179226408:179226542:179236852:179236960:179238616:179238754,	179236853	179236960	179236961	179236961	Splice_Site	G	T	p.E490_splice
LUSC	TCGA-66-2754-01	LYN	ENST00000520220.2,ENST00000519728.1	chr8	56866390:56866543:56879273:56879456:56882275:56882352,	56879274	56879456	56879273	56879273	Splice_Site	G	T	p.G264_splice
LUSC	TCGA-66-2755-01	MAG	ENST00000537831.2,ENST00000392213.3	chr19	35801514:35801546:35802820:35802920:35804192:35804707,	35802821	35802920	35802819	35802819	Splice_Site	A	G	p.K539_splice
LUSC	TCGA-66-2756-01	THADA	ENST00000403856.1,ENST00000404790.1,ENST00000402360.2,ENST00000405006.4,ENST00000405975.2,ENST00000415080.2	chr2	43801474:43802166:43804160:43804381:43805651:43805746,	43804161	43804381	43804383	43804383	Splice_Site	T	C	p.I273_splice
LUSC	TCGA-66-2756-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101060489:101060623:101062529:101062798:101066715:101066757,	101062530	101062798	101062529	101062529	Splice_Site	C	A	p.Q702_splice
LUSC	TCGA-66-2757-01	CASZ1	ENST00000377022.3,ENST00000496432.2,ENST00000344008.5	chr1	10715705:10715870:10716702:10716793:10718564:10718633,	10716703	10716793	10716794	10716794	Splice_Site	C	G	p.R470_splice
LUSC	TCGA-66-2757-01	UCHL5	ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998661:192998787:193018875:193018981:193020883:193020947,	193018876	193018981	193018982	193018982	Splice_Site	C	A	p.K47_splice
LUSC	TCGA-66-2757-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138376531:138376677:138382747:138382871:138383877:138384045,	138382748	138382871	138382872	138382872	Splice_Site	C	T	p.G891_splice
LUSC	TCGA-66-2757-01	CLSTN2	ENST00000511524.1	chr3	139654028:139654325:139894792:139894915:140122470:140122666,	139894793	139894915	139894792	139894792	Splice_Site	G	T	p.V37_splice
LUSC	TCGA-66-2757-01	SGK3	ENST00000396596.1,ENST00000522398.1,ENST00000345714.4,ENST00000523260.1,ENST00000521198.2	chr8	67753258:67753345:67755686:67755782:67759427:67759583,	67755687	67755782	67755686	67755686	Splice_Site	G	C	p.Y327_splice
LUSC	TCGA-66-2757-01	CCDC22	ENST00000376227.3	chrX	49104109:49104229:49104651:49104771:49104867:49104984,	49104652	49104771	49104772	49104772	Splice_Site	G	T	p.Q404_splice
LUSC	TCGA-66-2758-01	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870950	101870950	Splice_Site	G	T	p.G1156_splice
LUSC	TCGA-66-2758-01	HIGD1B	ENST00000591513.1,ENST00000253410.2	chr17	42925578:42925620:42926621:42926756:42927699:42927844,	42926622	42926756	42926621	42926621	Splice_Site	G	A	p.G34_splice
LUSC	TCGA-66-2759-01	HSPA8	ENST00000534567.1,ENST00000525624.1,ENST00000527983.1,ENST00000532780.1,ENST00000534624.1,ENST00000532182.1,ENST00000227378.3,ENST00000528292.1,ENST00000527387.1,ENST00000532636.1,ENST00000453788.2	chr11	122930872:122930976:122931300:122931506:122931827:122931966,	122931301	122931506	122931507	122931507	Splice_Site	C	G	p.D69_splice
LUSC	TCGA-66-2759-01	PDZD4	ENST00000480418.1,ENST00000544474.1	chrX	153071525:153071588:153072196:153072295:153095693:153095813,	153072197	153072295	153072196	153072196	Splice_Site	C	A	p.E168_splice
LUSC	TCGA-66-2763-01	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740020	35740020	Splice_Site	G	T	p.E1022_splice
LUSC	TCGA-66-2763-01	NEBL	ENST00000377122.4	chr10	21076130:21076237:21097438:21097588:21098734:21098827,	21097439	21097588	21097437	21097437	Splice_Site	A	G	p.A921_splice
LUSC	TCGA-66-2763-01	PELI2	ENST00000267460.4,ENST00000561019.1,ENST00000559044.1	chr14	56645052:56645182:56746393:56746495:56755154:56755352,	56746394	56746495	56746496	56746496	Splice_Site	G	T	p.Q103_splice
LUSC	TCGA-66-2765-01	CNOT4	ENST00000414802.1,ENST00000361528.4,ENST00000315544.5,ENST00000428680.2,ENST00000541284.1,ENST00000356162.4,ENST00000451834.1,ENST00000423368.2	chr7	135098236:135098362:135099079:135099181:135099924:135100011,	135099080	135099181	135099078	135099078	Splice_Site	A	C	p.K187_splice
LUSC	TCGA-66-2765-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576851	7576851	Splice_Site	A	T	p.Q331_splice
LUSC	TCGA-66-2766-01	CCDC136	ENST00000464672.1,ENST00000494552.1,ENST00000297788.4	chr7	128446428:128446449:128446741:128446912:128447413:128447599,	128446742	128446912	128446913	128446913	Splice_Site	G	T	p.K473_splice
LUSC	TCGA-66-2766-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1	chr8	51363115:51363159:51363247:51363289:51415337:51415440,	51363248	51363289	51363290	51363290	Splice_Site	G	T	p.V121_splice
LUSC	TCGA-66-2766-01	TYROBP	ENST00000262629.4,ENST00000587837.1	chr19	36398119:36398166:36398347:36398482:36398631:36398664,	36398348	36398482	36398483	36398483	Splice_Site	C	T	p.D32_splice
LUSC	TCGA-66-2767-01	ERC1	ENST00000589028.1,ENST00000355446.5,ENST00000546231.2,ENST00000588412.1,ENST00000538971.2,ENST00000360905.4,ENST00000543086.3,ENST00000545948.1,ENST00000542302.2,ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1399017:1399178:1480998:1481143:1517314:1517413,	1480999	1481143	1480998	1480998	Splice_Site	G	A	p.K927_splice
LUSC	TCGA-66-2767-01	CDK17	ENST00000553042.1,ENST00000543119.2,ENST00000261211.3,ENST00000542666.1	chr12	96688776:96688900:96691047:96691110:96691404:96691499,	96691048	96691110	96691046	96691046	Splice_Site	A	T	p.K291_splice
LUSC	TCGA-66-2767-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577156	7577156	Splice_Site	C	A	p.S261_splice
LUSC	TCGA-66-2768-01	CTSA	ENST00000606788.1,ENST00000191018.5,ENST00000372484.3,ENST00000354880.5,ENST00000372459.2	chr20	44525642:44525679:44526355:44526445:44526643:44526748,	44526356	44526445	44526355	44526355	Splice_Site	G	C	p.K407_splice
LUSC	TCGA-66-2773-01	SPINK2	ENST00000248701.4	chr4	57677850:57677960:57686701:57686745:57687773:57687908,	57686702	57686745	57686746	57686746	Splice_Site	C	A	p.A19_splice
LUSC	TCGA-66-2773-01	ANK1	ENST00000520299.1,ENST00000289734.7,ENST00000314214.8	chr8	41513247:41513272:41519393:41519459:41521176:41521260,41519044:41519082:41519393:41519459:41521176:41521260,	41519394	41519459	41519460	41519460	Splice_Site	C	G	p.I1827_splice
LUSC	TCGA-66-2773-01	ANK1	ENST00000522543.1,ENST00000347528.4	chr8	41519044:41519082:41519318:41519459:41521176:41521260,41513247:41513272:41519318:41519459:41521176:41521260,	41519319	41519459	41519460	41519460	Splice_Site	C	G	p.I1827_splice
LUSC	TCGA-66-2773-01	XPNPEP3	ENST00000414396.1,ENST00000357137.4,ENST00000541156.1	chr22	41253134:41253249:41265002:41265119:41277773:41277928,	41265003	41265119	41265120	41265120	Splice_Site	G	T	p.G61_splice
LUSC	TCGA-66-2777-01	NCKAP5L	ENST00000335999.6	chr12	50195630:50195750:50196740:50196779:50196879:50196948,	50196741	50196779	50196740	50196740	Splice_Site	C	A	p.K77_splice
LUSC	TCGA-66-2782-01	PM20D1	ENST00000460624.1	chr1	205814452:205814685:205817012:205817099:205819031:205819245,	205817013	205817099	205817012	205817012	Splice_Site	C	T	p.V86_splice
LUSC	TCGA-66-2782-01	TAOK1	ENST00000261716.3,ENST00000583121.1,ENST00000536202.1	chr17	27778472:27778698:27794162:27794234:27802687:27802721,	27794163	27794234	27794161	27794161	Splice_Site	A	T	p.A45_splice
LUSC	TCGA-66-2782-01	SH3BP1	ENST00000357436.4,ENST00000495174.1,ENST00000469947.1,ENST00000451997.1,ENST00000599616.1,ENST00000442465.2,ENST00000336738.5,ENST00000417536.1	chr22	38038905:38039013:38039104:38039181:38039650:38039795,	38039105	38039181	38039103	38039103	Splice_Site	A	T	p.E133_splice
LUSC	TCGA-66-2783-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953728	48953728	Splice_Site	A	G	p.R445_splice
LUSC	TCGA-66-2783-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574035	7574035	Splice_Site	T	C	p.I332_splice
LUSC	TCGA-66-2783-01	AIRE	ENST00000291582.5,ENST00000337909.5,ENST00000530812.1,ENST00000355347.4,ENST00000527919.1	chr21	45712184:45712284:45712875:45713058:45713671:45713793,	45712876	45713058	45713059	45713059	Splice_Site	G	T	p.Q426_splice
LUSC	TCGA-66-2785-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138403466:138403645:138407716:138407816:138409841:138409904,	138407717	138407816	138407817	138407817	Splice_Site	C	A	p.R679_splice
LUSC	TCGA-66-2785-01	ABCB1	ENST00000543898.1,ENST00000265724.3,ENST00000482527.1	chr7	87175264:87175340:87178663:87178834:87179166:87179370,	87178664	87178834	87178835	87178835	Splice_Site	C	T	p.K519_splice
LUSC	TCGA-66-2785-01	PRKAG2	ENST00000491938.1,ENST00000483775.1,ENST00000476632.1,ENST00000392801.2,ENST00000418337.2,ENST00000492843.1,ENST00000287878.4	chr7	151273456:151273538:151292430:151292540:151329154:151329224,	151292431	151292540	151292541	151292541	Splice_Site	C	G	p.A252_splice
LUSC	TCGA-66-2785-01	GLYATL1	ENST00000530240.1,ENST00000527708.1,ENST00000532726.1,ENST00000524881.1,ENST00000317391.4,ENST00000525608.1	chr11	58714518:58714638:58715330:58715438:58722242:58722262,	58715331	58715438	58715439	58715439	Splice_Site	G	A	p.Q93_splice
LUSC	TCGA-66-2785-01	ANO2	ENST00000545860.1,ENST00000327087.8,ENST00000542326.1,ENST00000546188.1,ENST00000356134.5,ENST00000538154.1	chr12	5744478:5744513:5756892:5756967:5841685:5841796,	5756893	5756967	5756892	5756892	Splice_Site	C	A	p.M540_splice
LUSC	TCGA-66-2785-01	USP15	ENST00000280377.5,ENST00000549415.1,ENST00000393654.3,ENST00000353364.3	chr12	62786854:62786982:62790074:62790178:62794966:62795055,	62790075	62790178	62790074	62790074	Splice_Site	G	A	p.N857_splice
LUSC	TCGA-66-2785-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62930930:62931043:62931381:62931486:62931875:62931956,	62931382	62931486	62931381	62931381	Splice_Site	G	T	p.L672_splice
LUSC	TCGA-66-2785-01	SLC28A1	ENST00000537624.1,ENST00000286749.3,ENST00000394573.1	chr15	85478256:85478425:85478551:85478749:85486675:85486757,	85478552	85478749	85478750	85478750	Splice_Site	G	A	p.S527_splice
LUSC	TCGA-66-2786-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173800672:173800768:173802513:173802637:173803610:173803657,	173802514	173802637	173802512	173802512	Splice_Site	A	G	p.K165_splice
LUSC	TCGA-66-2786-01	FARP2	ENST00000264042.3,ENST00000470617.1	chr2	242430930:242431094:242432343:242432451:242432707:242432859,	242432344	242432451	242432343	242432343	Splice_Site	G	A	p.N930_splice
LUSC	TCGA-66-2787-01	RECK	ENST00000377966.3	chr9	36091160:36091340:36100327:36100540:36102090:36102227,	36100328	36100540	36100327	36100327	Splice_Site	G	T	p.R362_splice
LUSC	TCGA-66-2787-01	GLB1L2	ENST00000389881.3,ENST00000339772.7	chr11	134201955:134202041:134212647:134212845:134214280:134214349,	134212648	134212845	134212647	134212647	Splice_Site	G	T	p.R29_splice
LUSC	TCGA-66-2787-01	SEC23A	ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39511989:39512076:39514366:39514528:39517855:39517933,	39514367	39514528	39514366	39514366	Splice_Site	C	A	p.E633_splice
LUSC	TCGA-66-2787-01	CRTC3	ENST00000561119.1,ENST00000420329.2,ENST00000268184.6	chr15	91150609:91150710:91157684:91157720:91161114:91161200,	91157685	91157720	91157683	91157683	Splice_Site	A	G	p.G193_splice
LUSC	TCGA-66-2788-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	A	p.T125_splice
LUSC	TCGA-66-2788-01	NF1	ENST00000358273.4,ENST00000479536.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29661855:29662049:29663350:29663491:29663652:29663891,	29663351	29663491	29663350	29663350	Splice_Site	G	T	p.I2003_splice
LUSC	TCGA-66-2788-01	TMC2	ENST00000358864.1	chr20	2572955:2573054:2575470:2575613:2577796:2577944,	2575471	2575613	2575614	2575614	Splice_Site	G	A	p.S359_splice
LUSC	TCGA-66-2789-01	CNTN3	ENST00000263665.6	chr3	74411040:74411191:74413617:74413747:74414716:74414853,	74413618	74413747	74413749	74413749	Splice_Site	T	A	p.E362_splice
LUSC	TCGA-66-2789-01	RGR	ENST00000478727.1,ENST00000358110.5	chr10	86004818:86004925:86007346:86007503:86008677:86008799,	86007347	86007503	86007505	86007505	Splice_Site	T	C	p.R79_splice
LUSC	TCGA-66-2789-01	VWF	ENST00000261405.5	chr12	6058999:6059049:6061009:6061049:6061556:6061685,	6061010	6061049	6061009	6061009	Splice_Site	C	A	p.C2719_splice
LUSC	TCGA-66-2791-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42602494:42602535:42618049:42618095:42626552:42626651,	42618050	42618095	42618096	42618096	Splice_Site	C	T	p.K122_splice
LUSC	TCGA-66-2791-01	CACNA1A	ENST00000360228.5,ENST00000573710.2	chr19	13470419:13470613:13476130:13476283:13482501:13482593,	13476131	13476283	13476130	13476130	Splice_Site	C	T	p.D262_splice
LUSC	TCGA-66-2792-01	NMD3	ENST00000472947.1,ENST00000478160.1,ENST00000351193.2,ENST00000463518.1,ENST00000493066.1,ENST00000460469.1	chr3	160951186:160951267:160952514:160952643:160952909:160953000,	160952515	160952643	160952514	160952514	Splice_Site	G	T	p.V120_splice
LUSC	TCGA-66-2793-01	IWS1	ENST00000409725.1	chr2	128263130:128263328:128281251:128281367:128283750:128284016,128263130:128263328:128281251:128281367:128284211:128284462,	128281252	128281367	128281368	128281368	Splice_Site	C	G	p.D12_splice
LUSC	TCGA-66-2793-01	EGF	ENST00000503392.1,ENST00000265171.5,ENST00000509793.1,ENST00000502723.1	chr4	110862101:110862301:110864409:110864591:110864997:110865128,	110864410	110864591	110864592	110864592	Splice_Site	G	A	p.R170_splice
LUSC	TCGA-66-2795-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5	chr3	171395355:171395484:171406465:171406666:171410121:171410232,171405160:171405374:171406465:171406666:171410121:171410232,	171406466	171406666	171406667	171406667	Splice_Site	C	G	p.V447_splice
LUSC	TCGA-66-2795-01	ZNF165	ENST00000377325.1	chr6	28053258:28053669:28053949:28054088:28056340:28057341,	28053950	28054088	28053949	28053949	Splice_Site	G	A	p.V138_splice
LUSC	TCGA-66-2795-01	UTP6	ENST00000261708.4,ENST00000583408.1,ENST00000477128.1	chr17	30211442:30211524:30212998:30213080:30214254:30214332,	30212999	30213080	30213082	30213082	Splice_Site	T	G	p.E208_splice
LUSC	TCGA-66-2800-01	CNTROB	ENST00000380255.3,ENST00000571540.1,ENST00000571632.1,ENST00000565740.1,ENST00000563694.1,ENST00000380262.3	chr17	7840018:7840135:7840481:7840580:7842830:7843021,	7840482	7840580	7840481	7840481	Splice_Site	G	A	p.T277_splice
LUSC	TCGA-66-2800-01	PSMD3	ENST00000264639.4	chr17	38151676:38151780:38152435:38152591:38153582:38153633,	38152436	38152591	38152592	38152592	Splice_Site	G	A	p.K492_splice
LUSC	TCGA-66-2800-01	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000411842.2,ENST00000404234.3	chr22	26743754:26743879:26747017:26747209:26771540:26771655,26743754:26743879:26747017:26747209:26761337:26761532,	26747018	26747209	26747016	26747016	Splice_Site	A	C	p.I803_splice
LUSC	TCGA-70-6722-01	TMEM117	ENST00000550495.1,ENST00000266534.3,ENST00000546868.1,ENST00000536799.1	chr12	44693362:44693522:44770377:44770507:44781808:44781818,	44770378	44770507	44770376	44770376	Splice_Site	A	G	p.D257_splice
LUSC	TCGA-70-6723-01	RASGRF2	ENST00000265080.4,ENST00000503795.1	chr5	80513174:80513292:80515528:80515597:80521496:80521631,	80515529	80515597	80515598	80515598	Splice_Site	G	C	p.K1207_splice
LUSC	TCGA-70-6723-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000579951.1,ENST00000400111.3,ENST00000544123.1,ENST00000545076.1,ENST00000578618.1,ENST00000427684.2,ENST00000542652.2	chr18	5395065:5395146:5395607:5395706:5396199:5396331,	5395608	5395706	5395708	5395708	Splice_Site	T	G	p.V992_splice
LUSC	TCGA-85-6175-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5968176:5969436:5988344:5988545:6007194:6007364,	5988345	5988545	5988344	5988344	Splice_Site	C	G	p.R265_splice
LUSC	TCGA-85-6560-01	EIF2AK1	ENST00000446699.1,ENST00000463213.1,ENST00000199389.6,ENST00000431744.1	chr7	6088437:6088475:6089542:6089676:6094176:6094266,	6089543	6089676	6089541	6089541	Splice_Site	A	T	p.Q137_splice
LUSC	TCGA-85-6560-01	LRRC49	ENST00000559806.1,ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558808.1,ENST00000558456.1,ENST00000560107.2,ENST00000561081.1,ENST00000560980.1,ENST00000260382.5,ENST00000443425.2,ENST00000560691.1	chr15	71256123:71256271:71272439:71272523:71276432:71276544,	71272440	71272523	71272438	71272438	Splice_Site	A	T	p.E313_splice
LUSC	TCGA-85-6561-01	CTNNA2	ENST00000466387.1,ENST00000496558.1,ENST00000402739.4,ENST00000541047.1,ENST00000361291.4,ENST00000540488.1	chr2	79971512:79971708:80085138:80085305:80096941:80097061,	80085139	80085305	80085138	80085138	Splice_Site	G	T	p.G100_splice
LUSC	TCGA-85-6561-01	PRPF40A	ENST00000545856.1,ENST00000410080.1,ENST00000354363.6	chr2	153530111:153530220:153532918:153533293:153533964:153533989,	153532919	153533293	153532918	153532918	Splice_Site	C	G	p.D371_splice
LUSC	TCGA-85-6561-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38850685:38850828:38851097:38851232:38851651:38851774,	38851098	38851232	38851097	38851097	Splice_Site	G	T	p.A2668_splice
LUSC	TCGA-85-6561-01	ALKBH3	ENST00000532129.1	chr11	43913590:43913679:43923065:43923275:43940587:43940592,43911311:43911378:43923065:43923275:43940587:43940592,	43923066	43923275	43923276	43923276	Splice_Site	G	T	p.P223_splice
LUSC	TCGA-85-6561-01	TSHR	ENST00000298171.2,ENST00000554263.1,ENST00000553763.1,ENST00000541158.2,ENST00000555326.1,ENST00000554435.1,ENST00000342443.6	chr14	81421998:81422194:81528491:81528563:81534597:81534672,	81528492	81528563	81528491	81528491	Splice_Site	G	T	p.L57_splice
LUSC	TCGA-85-6561-01	ZC3H14	ENST00000555120.1,ENST00000359301.3,ENST00000336693.4,ENST00000554602.1,ENST00000556945.1,ENST00000555755.1,ENST00000557693.1,ENST00000251038.5,ENST00000556158.1,ENST00000555799.1,ENST00000393514.5,ENST00000302216.8	chr14	89034382:89034497:89037427:89037468:89038373:89038457,	89037428	89037468	89037427	89037427	Splice_Site	G	C	p.W65_splice
LUSC	TCGA-85-6561-01	IDH3B	ENST00000492240.1	chr20	2640170:2640231:2640344:2640822:2640908:2640954,	2640345	2640822	2640344	2640344	Splice_Site	C	T	p.N337_splice
LUSC	TCGA-85-6561-01	IDH3B	ENST00000466494.2,ENST00000380851.5,ENST00000488299.1,ENST00000474315.1,ENST00000380843.4	chr20	2640170:2640231:2640344:2640439:2640713:2640822,2640170:2640231:2640344:2640439:2640675:2640822,	2640345	2640439	2640344	2640344	Splice_Site	C	T	p.N337_splice
LUSC	TCGA-85-6561-01	OCRL	ENST00000357121.5,ENST00000371113.4	chrX	128709116:128709227:128709873:128710039:128710293:128710529,	128709874	128710039	128710040	128710040	Splice_Site	G	T	p.N627_splice
LUSC	TCGA-21-5787-01	SEPHS1	ENST00000327347.5,ENST00000545675.1,ENST00000413411.1,ENST00000378614.4,ENST00000537130.1,ENST00000425947.1	chr10	13375900:13375971:13378242:13378350:13380704:13380808,	13378243	13378350	13378352	13378352	Splice_Site	T	-	p.G100_splice
LUSC	TCGA-43-6143-01	FNDC1	ENST00000297267.9	chr6	159647504:159647612:159650846:159651035:159652913:159654880,	159650847	159651035	159651036	159651036	Splice_Site	G	-	p.T457_splice
LUSC	TCGA-46-3769-01	MEAF6	ENST00000373074.1,ENST00000296214.5	chr1	37959534:37959708:37961485:37961519:37967404:37967597,	37961486	37961519	37961483	37961484	Splice_Site	-	A	p.A199_splice
LUSC	TCGA-51-4080-01	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740020	35740020	Splice_Site	G	-	p.E1022_splice
LUSC	TCGA-66-2757-01	SERPINF1	ENST00000570731.1,ENST00000577053.1,ENST00000254722.4	chr17	1665361:1665407:1673145:1673344:1674322:1674374,1670203:1670288:1673145:1673344:1674322:1674374,	1673146	1673344	1673345	1673346	Splice_Site	-	TC	p.G95_splice
LUSC	TCGA-66-2757-01	SERPINF1	ENST00000571360.1	chr17	1670203:1670288:1673184:1673344:1674322:1674374,	1673185	1673344	1673345	1673346	Splice_Site	-	TC	p.G95_splice
LUSC	TCGA-66-2757-01	SERPINF1	ENST00000571870.1	chr17	1670203:1670288:1672965:1673344:1674322:1674374,	1672966	1673344	1673345	1673346	Splice_Site	-	TC	p.G95_splice
OV	TCGA-04-1331-01	MIB1	ENST00000578646.1,ENST00000261537.6	chr18	19348583:19348713:19353584:19353689:19358063:19358130,	19353585	19353689	19353583	19353589	Splice_Site	AGGTAAC	-	p.V178_splice
OV	TCGA-04-1331-01	TCOF1	ENST00000377797.3,ENST00000515035.1,ENST00000513346.1,ENST00000451292.1,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149751568:149751799:149753736:149753949:149754179:149754374,	149753737	149753949	149753735	149753735	Splice_Site	A	C	p.V291_splice
OV	TCGA-04-1357-01	TAMM41	ENST00000444133.2,ENST00000455809.1	chr3	11849306:11849369:11850990:11851156:11858665:11858811,	11850991	11851156	11851157	11851157	Splice_Site	C	G	p.I237_splice
OV	TCGA-09-2044-01	ATG2B	ENST00000359933.4	chr14	96784059:96784192:96788448:96788591:96788876:96789072,	96788449	96788591	96788593	96788594	Splice_Site	-	AA	p.M913_splice
OV	TCGA-09-2044-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578266	7578290	Splice_Site	TAAGATGCTGAGGAGGGGCCAGACC	-	p.G187_splice
OV	TCGA-09-2049-01	ERI3	ENST00000537474.1,ENST00000495828.1,ENST00000457571.1,ENST00000372259.5,ENST00000372257.2,ENST00000452396.1	chr1	44773981:44774073:44778840:44778900:44785299:44785416,	44778841	44778900	44778840	44778840	Splice_Site	C	G	p.E222_splice
OV	TCGA-09-2053-01	NUDT7	ENST00000437314.3	chr16	77756441:77756514:77759327:77759481:77769724:77769883,77756441:77756514:77759327:77759481:77775478:77775721,	77759328	77759481	77759482	77759482	Splice_Site	G	T	p.K63_splice
OV	TCGA-09-2056-01	TRAPPC8	ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29410560:29410947:29412046:29412136:29419274:29419420,29410883:29410952:29412046:29412136:29419274:29419420,	29412047	29412136	29412046	29412046	Splice_Site	C	T	p.S1358_splice
OV	TCGA-13-1487-01	CST3	ENST00000376925.3,ENST00000398409.1	chr20	23614550:23614636:23615890:23616004:23618256:23618569,	23615891	23616004	23615890	23615890	Splice_Site	C	A	p.R119_splice
OV	TCGA-13-1495-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2,ENST00000549875.1	chr12	112308888:112308984:112318250:112318331:112321384:112321572,	112318251	112318331	112318333	112318333	Splice_Site	T	A	p.K220_splice
OV	TCGA-13-1501-01	UBE2Q2	ENST00000338677.4,ENST00000267938.4,ENST00000426727.2,ENST00000561851.1,ENST00000569423.1	chr15	76161291:76161351:76165768:76165909:76175706:76175765,76161291:76161351:76165768:76165909:76168527:76168612,	76165769	76165909	76165768	76165768	Splice_Site	G	T	p.D150_splice
OV	TCGA-13-1504-01	WIPF2	ENST00000585043.1,ENST00000583130.1,ENST00000584296.1,ENST00000323571.4	chr17	38412642:38412774:38416786:38416919:38430041:38430251,38412642:38412774:38416786:38416919:38418776:38418890,	38416787	38416919	38416786	38416786	Splice_Site	G	A	p.A22_splice
OV	TCGA-13-1504-01	WIPF2	ENST00000582781.1	chr17	38412642:38412774:38416786:38416879:38418776:38418890,	38416787	38416879	38416786	38416786	Splice_Site	G	A	p.A22_splice
OV	TCGA-23-1027-01	GFRA1	ENST00000369234.4,ENST00000355422.6	chr10	117884731:117885068:117971142:117971157:118029014:118029098,	117971143	117971157	117971142	117971142	Splice_Site	C	A	p.V145_splice
OV	TCGA-23-1027-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52356424:52356791:52357823:52357896:52360155:52360330,	52357824	52357896	52357823	52357823	Splice_Site	G	A	p.E112_splice
OV	TCGA-23-1110-01	EPHX1	ENST00000445856.1,ENST00000272167.5,ENST00000366837.4,ENST00000448202.1	chr1	226016543:226016613:226019479:226019660:226026354:226026398,	226019480	226019660	226019478	226019478	Splice_Site	A	T	p.D62_splice
OV	TCGA-23-1116-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577146	7577156	Splice_Site	TAGATTACCAC	-	p.S261_splice
OV	TCGA-23-2072-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	T	p.Q331_splice
OV	TCGA-23-2079-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27500363:27500499:27500922:27501064:27503658:27503836,	27500923	27501064	27501066	27501066	Splice_Site	T	A	p.G1051_splice
OV	TCGA-23-2081-01	KRT6C	ENST00000252250.6	chr12	52864915:52865080:52865204:52865300:52865455:52865515,	52865205	52865300	52865203	52865203	Splice_Site	A	G	p.A304_splice
OV	TCGA-24-0970-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	T	p.G187_splice
OV	TCGA-24-0979-01	ACVR1B	ENST00000257963.4,ENST00000415850.2,ENST00000542485.1,ENST00000426655.2	chr12	52374752:52374983:52377782:52377950:52378975:52379132,	52377783	52377950	52377951	52377951	Splice_Site	G	C	p.G368_splice
OV	TCGA-24-0979-01	COIL	ENST00000240316.4	chr17	55015547:55016515:55019395:55019484:55023802:55023872,	55019396	55019484	55019486	55019486	Splice_Site	T	A	p.A520_splice
OV	TCGA-24-0979-01	EPS15L1	ENST00000602022.1,ENST00000596151.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000602009.1,ENST00000592031.1,ENST00000535753.2	chr19	16528362:16528448:16528758:16528915:16532129:16532244,	16528759	16528915	16528758	16528758	Splice_Site	C	A	p.P369_splice
OV	TCGA-24-1423-01	ARHGEF9	ENST00000437457.2,ENST00000253401.6,ENST00000374878.1,ENST00000374872.1,ENST00000374870.4	chrX	62898219:62898452:62917004:62917184:62926137:62926329,	62917005	62917184	62917004	62917004	Splice_Site	C	T	p.H187_splice
OV	TCGA-24-1565-01	PEAR1	ENST00000292357.7,ENST00000338302.3,ENST00000455314.1	chr1	156873709:156873819:156874539:156874644:156875115:156875216,	156874540	156874644	156874645	156874645	Splice_Site	G	A	p.T69_splice
OV	TCGA-24-2035-01	TUSC3	ENST00000506802.1,ENST00000511783.2,ENST00000382020.4,ENST00000503731.1	chr8	15531271:15531345:15588174:15588238:15601046:15601121,	15588175	15588238	15588173	15588173	Splice_Site	A	G	p.S267_splice
OV	TCGA-24-2254-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122837272:122837333:122838999:122839103:122839661:122839859,	122839000	122839103	122838999	122838999	Splice_Site	C	T	p.R436_splice
OV	TCGA-24-2262-01	DYNC1H1	ENST00000360184.4,ENST00000555204.1	chr14	102486370:102486393:102489087:102489217:102492910:102493044,	102489088	102489217	102489219	102489219	Splice_Site	T	A	p.K2879_splice
OV	TCGA-24-2267-01	VPS13D	ENST00000356315.4,ENST00000496628.1,ENST00000543766.1,ENST00000011700.6,ENST00000358136.3	chr1	12520294:12520451:12557553:12557685:12566906:12566961,	12557554	12557685	12557552	12557552	Splice_Site	A	G	p.R4221_splice
OV	TCGA-24-2267-01	NLRC3	ENST00000448023.2,ENST00000603128.1,ENST00000419350.2,ENST00000301749.7,ENST00000603507.1	chr16	3598134:3598218:3598669:3598753:3599141:3599225,	3598670	3598753	3598755	3598755	Splice_Site	T	C	p.D867_splice
OV	TCGA-24-2281-01	KIF3C	ENST00000264712.3,ENST00000455394.1,ENST00000488341.1,ENST00000417737.1,ENST00000405914.1	chr2	26174657:26174774:26177135:26177254:26178409:26178532,	26177136	26177254	26177255	26177255	Splice_Site	C	T	p.L591_splice
OV	TCGA-24-2281-01	RBM3	ENST00000489344.1,ENST00000376759.3,ENST00000430348.2,ENST00000376755.1,ENST00000466764.1,ENST00000354480.2	chrX	48434701:48434807:48434895:48434992:48435413:48435497,	48434896	48434992	48434994	48434994	Splice_Site	T	G	p.R138_splice
OV	TCGA-25-1313-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150301	27150301	Splice_Site	G	A	p.E200_splice
OV	TCGA-25-1320-01	TM2D1	ENST00000496465.1,ENST00000371177.2,ENST00000371180.2,ENST00000371178.1,ENST00000488206.1,ENST00000468586.1,ENST00000606498.1,ENST00000294613.5	chr1	62166605:62166697:62175000:62175109:62189384:62189444,	62175001	62175109	62174999	62174999	Splice_Site	A	C	p.V116_splice
OV	TCGA-25-1326-01	ADK	ENST00000286621.2,ENST00000372734.3,ENST00000539909.1	chr10	75960523:75960596:75984295:75984349:76074424:76074503,	75984296	75984349	75984351	75984351	Splice_Site	T	G	p.L65_splice
OV	TCGA-25-2042-01	PSG4	ENST00000244295.9	chr19	43699150:43699425:43702148:43702427:43708037:43708203,43698660:43698746:43702148:43702427:43708037:43708203,	43702149	43702427	43702148	43702148	Splice_Site	C	G	p.P237_splice
OV	TCGA-25-2392-01	GALNT1	ENST00000589189.1,ENST00000269195.5	chr18	33234619:33234765:33243591:33243766:33257554:33257721,	33243592	33243766	33243591	33243591	Splice_Site	G	C	p.V47_splice
OV	TCGA-25-2399-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000481085.1	chr3	53752327:53752415:53753781:53753808:53756340:53756485,	53753782	53753808	53753780	53753780	Splice_Site	A	G	p.C493_splice
OV	TCGA-25-2400-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	A	p.E224_splice
OV	TCGA-25-2409-01	THBS2	ENST00000366787.3	chr6	169648869:169649068:169650827:169650901:169653818:169653991,	169650828	169650901	169650827	169650827	Splice_Site	C	T	p.A18_splice
OV	TCGA-29-2427-01	PLAC8	ENST00000509973.1	chr4	84015830:84015944:84026048:84026173:84028956:84029103,84015830:84015944:84026048:84026173:84035818:84035868,	84026049	84026173	84026174	84026174	Splice_Site	C	A	p.C40_splice
OV	TCGA-31-1950-01	STK38	ENST00000229812.7	chr6	36465556:36465652:36466139:36466263:36467649:36467767,	36466140	36466263	36466139	36466139	Splice_Site	C	T	p.R359_splice
OV	TCGA-57-1993-01	MYL6	ENST00000548400.1	chr12	56552467:56552495:56553370:56553406:56553758:56553771,	56553371	56553406	56553369	56553369	Splice_Site	A	G	p.E104_splice
OV	TCGA-57-1993-01	MYL6	ENST00000547408.1,ENST00000547649.1,ENST00000348108.4,ENST00000293422.5,ENST00000550697.1,ENST00000551589.1,ENST00000548725.1,ENST00000548293.1,ENST00000536128.1	chr12	56552467:56552495:56553370:56553514:56553758:56553771,	56553371	56553514	56553369	56553369	Splice_Site	A	G	p.E104_splice
OV	TCGA-59-2348-01	GRID1	ENST00000464741.1,ENST00000327946.7	chr10	87628766:87628937:87675942:87675996:87898575:87898781,	87675943	87675996	87675942	87675942	Splice_Site	C	T	p.E260_splice
OV	TCGA-59-2351-01	EDC3	ENST00000563009.1,ENST00000315127.4,ENST00000568176.1,ENST00000569561.1,ENST00000426797.3	chr15	74948360:74948409:74963795:74964115:74967301:74967483,	74963796	74964115	74964117	74964117	Splice_Site	T	C	p.R55_splice
OV	TCGA-59-2354-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51695658:51695787:51701201:51701267:51712572:51712632,	51701202	51701267	51701201	51701201	Splice_Site	C	A	p.A2725_splice
OV	TCGA-59-2355-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	A	p.Q331_splice
OV	TCGA-61-1998-01	GMPR2	ENST00000559287.1	chr14	24705301:24705346:24706247:24706358:24706450:24706493,	24706248	24706358	24706359	24706359	Splice_Site	G	C	p.G183_splice
OV	TCGA-61-1998-01	GMPR2	ENST00000561035.1,ENST00000456667.3,ENST00000559836.1,ENST00000399440.2,ENST00000557854.1,ENST00000355299.4,ENST00000558865.1,ENST00000561130.1,ENST00000561038.1,ENST00000420554.2,ENST00000558483.1,ENST00000348719.7	chr14	24705301:24705346:24706276:24706358:24706450:24706493,	24706277	24706358	24706359	24706359	Splice_Site	G	C	p.G183_splice
OV	TCGA-61-2008-01	WDR27	ENST00000546525.1,ENST00000467418.1,ENST00000423258.1,ENST00000448612.1,ENST00000441385.2,ENST00000333572.6	chr6	170059181:170059303:170059546:170059614:170060758:170060788,	170059547	170059614	170059616	170059616	Splice_Site	T	G	p.D377_splice
OV	TCGA-61-2009-01	UGT2B7	ENST00000305231.7	chr4	69972892:69972980:69973820:69974040:69978174:69978290,	69973821	69974040	69974041	69974041	Splice_Site	G	C	p.S437_splice
OV	TCGA-61-2012-01	ARHGAP21	ENST00000446003.1,ENST00000396432.2	chr10	24910102:24910298:24911661:24911691:24918924:24918979,	24911662	24911691	24911660	24911660	Splice_Site	A	T	p.L175_splice
OV	TCGA-61-2097-01	PARP12	ENST00000493262.1,ENST00000473341.1,ENST00000263549.3,ENST00000488726.1	chr7	139741443:139741639:139746683:139746807:139754461:139754522,	139746684	139746807	139746809	139746809	Splice_Site	T	A	p.D288_splice
OV	TCGA-61-2102-01	C16orf70	ENST00000569600.1,ENST00000569683.1,ENST00000563853.2,ENST00000219139.3,ENST00000569626.1	chr16	67154014:67154097:67159861:67159945:67165188:67165232,	67159862	67159945	67159946	67159947	Splice_Site	-	T	p.K77_splice
OV	TCGA-23-1124-01	CA14	ENST00000607652.1,ENST00000369111.4,ENST00000483993.2	chr1	150233976:150234037:150234556:150234699:150234923:150235019,	150234557	150234699	150234556	150234556	Splice_Site	G	A	e4-1
OV	TCGA-25-1315-01	DENND4B	ENST00000361217.4,ENST00000474386.1	chr1	153903217:153903333:153903422:153903540:153904679:153904731,	153903423	153903540	153903542	153903543	Splice_Site	-	G	e24-2
OV	TCGA-25-1315-01	DENND4B	ENST00000492898.1	chr1	153903014:153903079:153903167:153903540:153904679:153904731,	153903168	153903540	153903542	153903543	Splice_Site	-	G	e24-2
OV	TCGA-13-1482-01	NLRP3	ENST00000391827.2,ENST00000336119.3,ENST00000391828.3	chr1	247597464:247597575:247599271:247599442:247607273:247607444,	247599272	247599442	247599443	247599443	Splice_Site	G	C	e6+1
OV	TCGA-13-0723-01	MKNK1	ENST00000525888.1	chr1	47048899:47049001:47051545:47051646:47051905:47051931,47048899:47049001:47051545:47051646:47059784:47059878,47050330:47050475:47051545:47051646:47059784:47059878,	47051546	47051646	47051647	47051647	Splice_Site	C	C	e1-1
OV	TCGA-13-1507-01	DPYD	ENST00000370192.3	chr1	97981281:97981497:98015115:98015300:98039315:98039526,	98015116	98015300	98015114	98015114	Splice_Site	A	T	e12+2
OV	TCGA-13-0893-01	CUL2	ENST00000374742.1,ENST00000374746.1,ENST00000374754.4,ENST00000374748.1,ENST00000374749.3,ENST00000602371.1,ENST00000374751.3,ENST00000537177.1	chr10	35324099:35324224:35327847:35328010:35333493:35333604,	35327848	35328010	35328011	35328011	Splice_Site	C	T	e8-1
OV	TCGA-23-1124-01	NCAPD3	ENST00000534548.2,ENST00000534532.2,ENST00000525964.2	chr11	134026912:134026990:134027822:134027962:134028223:134028390,	134027823	134027962	134027822	134027822	Splice_Site	C	A	e31+1
OV	TCGA-10-0930-01	CREB3L1	ENST00000288400.3,ENST00000529193.1	chr11	46334401:46334470:46337836:46337936:46338911:46339038,	46337837	46337936	46337937	46337937	Splice_Site	G	T	e9+1
OV	TCGA-04-1347-01	PLEKHA5	ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000538972.1,ENST00000539256.1,ENST00000429027.2,ENST00000424268.1,ENST00000299275.6,ENST00000543806.1	chr12	19518897:19519043:19522626:19522732:19528464:19528519,	19522627	19522732	19522733	19522733	Splice_Site	G	C	e25+1
OV	TCGA-13-1509-01	CMAS	ENST00000229329.2,ENST00000535610.1,ENST00000537658.1	chr12	22213765:22213860:22214214:22214386:22215214:22215347,	22214215	22214386	22214388	22214388	Splice_Site	T	G	e6+2
OV	TCGA-23-1022-01	TRIP4	ENST00000561265.1,ENST00000558820.1,ENST00000261884.3,ENST00000560567.1,ENST00000559565.1	chr15	64687596:64687730:64689804:64690017:64692941:64693020,	64689805	64690017	64690018	64690018	Splice_Site	G	T	e4+1
OV	TCGA-10-0930-01	DIS3L	ENST00000530537.1,ENST00000319194.5,ENST00000319212.4	chr15	66615830:66615923:66618168:66618702:66621307:66621462,	66618169	66618702	66618704	66618704	Splice_Site	T	G	e11+2
OV	TCGA-23-1124-01	CSF3	ENST00000225474.2	chr17	38171698:38171767:38171943:38172107:38172485:38172593,	38171944	38172107	38171943	38171943	Splice_Site	G	A	e2-1
OV	TCGA-23-1124-01	CSF3	ENST00000394149.3	chr17	38171698:38171767:38171943:38172098:38172485:38172593,	38171944	38172098	38171943	38171943	Splice_Site	G	A	e2-1
OV	TCGA-13-0726-01	CDC27	ENST00000574304.1,ENST00000066544.3,ENST00000527547.1,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219793:45219802:45221248:45221348:45229171:45229284,	45221249	45221348	45221247	45221247	Splice_Site	A	G	e10+2
OV	TCGA-13-0726-01	UNK	ENST00000293218.3,ENST00000589666.1	chr17	73815819:73815866:73816000:73816189:73818557:73818739,	73816001	73816189	73816190	73816190	Splice_Site	G	C	e14+1
OV	TCGA-13-1498-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574034	7574034	Splice_Site	C	T	e9-1
OV	TCGA-24-1436-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	G	e8+1
OV	TCGA-24-1103-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577018	7577018	Splice_Site	C	T	e7+1
OV	TCGA-10-0935-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	G	e5-1
OV	TCGA-13-1403-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	A	e3+1
OV	TCGA-24-1562-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579592	7579592	Splice_Site	T	A	e3-2
OV	TCGA-24-1616-01	DSC3	ENST00000434452.1,ENST00000360428.4	chr18	28604314:28604459:28605725:28605881:28609474:28609594,	28605726	28605881	28605882	28605882	Splice_Site	C	A	e5-1
OV	TCGA-13-0807-01	UBA2	ENST00000586313.1,ENST00000246548.4,ENST00000439527.2	chr19	34945393:34945461:34949673:34949829:34951374:34951471,	34949674	34949829	34949673	34949673	Splice_Site	G	T	e13-1
OV	TCGA-23-1021-01	DHX34	ENST00000328771.4	chr19	47858295:47858607:47861122:47861377:47863224:47863327,	47861123	47861377	47861378	47861378	Splice_Site	G	C	e3+1
OV	TCGA-13-0795-01	PREPL	ENST00000378511.3,ENST00000410081.1,ENST00000409411.1,ENST00000409272.1,ENST00000409957.1,ENST00000426481.1,ENST00000541738.1,ENST00000425263.1,ENST00000260648.6,ENST00000378520.3,ENST00000409936.1	chr2	44548211:44548584:44548965:44549039:44549869:44549993,	44548966	44549039	44548965	44548965	Splice_Site	C	A	e13+1
OV	TCGA-23-1117-01	RTN4	ENST00000317610.7,ENST00000402434.2	chr2	55209650:55209789:55214626:55214834:55276880:55277350,	55214627	55214834	55214836	55214836	Splice_Site	T	C	e4-2
OV	TCGA-04-1343-01	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000343706.4,ENST00000404234.3,ENST00000360929.3,ENST00000403121.1	chr22	26709729:26709868:26736401:26736598:26743684:26743879,	26736402	26736598	26736599	26736599	Splice_Site	G	A	e10+1
OV	TCGA-13-1411-01	SNX4	ENST00000536067.1,ENST00000251775.4,ENST00000471751.1	chr3	125188297:125188363:125195538:125195600:125199090:125199163,	125195539	125195600	125195602	125195602	Splice_Site	T	A	e8-2
OV	TCGA-25-1315-01	ACAD9	ENST00000508971.1,ENST00000511325.1,ENST00000308982.7,ENST00000511526.1,ENST00000505867.1,ENST00000511227.1,ENST00000505192.1	chr3	128623228:128623348:128624963:128625092:128627027:128627107,	128624964	128625092	128625093	128625104	Splice_Site	GTGAGTGGCCCC	-	e12+1
OV	TCGA-13-0890-01	LAMP3	ENST00000466939.1,ENST00000265598.3	chr3	182858325:182858383:182870162:182870291:182871469:182872179,	182870163	182870291	182870292	182870292	Splice_Site	C	G	e3-1
OV	TCGA-13-1509-01	AZI2	ENST00000479665.1,ENST00000457172.1,ENST00000295748.3,ENST00000414162.1,ENST00000420543.2,ENST00000334100.6,ENST00000463512.1	chr3	28379427:28379527:28379983:28380106:28381892:28382092,	28379984	28380106	28380107	28380107	Splice_Site	C	G	e2-1
OV	TCGA-04-1336-01	PXK	ENST00000383715.4,ENST00000302779.5,ENST00000356151.2,ENST00000484288.1,ENST00000479241.1	chr3	58318713:58318817:58368240:58368427:58376308:58376386,58355157:58355205:58368240:58368427:58376308:58376386,	58368241	58368427	58368240	58368240	Splice_Site	G	T	e4-1
OV	TCGA-24-1464-01	SNX25	ENST00000264694.8,ENST00000504273.1,ENST00000504959.1	chr4	186263129:186263270:186267690:186267804:186274638:186274756,186263129:186263270:186267690:186267804:186272598:186272763,	186267691	186267804	186267690	186267690	Splice_Site	G	A	e12-1
OV	TCGA-13-1403-01	GABRA2	ENST00000381620.4,ENST00000514090.1,ENST00000356504.1,ENST00000515082.1,ENST00000540012.1,ENST00000507069.1,ENST00000510861.1	chr4	46263942:46264145:46305476:46305629:46307584:46307594,	46305477	46305629	46305476	46305476	Splice_Site	C	A	e7+1
OV	TCGA-23-1123-01	UIMC1	ENST00000377227.4,ENST00000512031.1,ENST00000506128.1,ENST00000511320.1	chr5	176335633:176335695:176338311:176338390:176370335:176370489,	176338312	176338390	176338311	176338311	Splice_Site	C	T	e10+1
OV	TCGA-23-1123-01	UIMC1	ENST00000377219.2	chr5	176335633:176335695:176338311:176338393:176370335:176370489,	176338312	176338393	176338311	176338311	Splice_Site	C	T	e10+1
OV	TCGA-13-0884-01	ADAMTS16	ENST00000274181.7,ENST00000511368.1,ENST00000433402.2	chr5	5182156:5182418:5186164:5186364:5187837:5187921,	5186165	5186364	5186163	5186163	Splice_Site	A	G	e5-2
OV	TCGA-10-0930-01	PREP	ENST00000369110.3	chr6	105736632:105736769:105771539:105771643:105776703:105776901,	105771540	105771643	105771645	105771645	Splice_Site	T	G	e10-2
OV	TCGA-04-1362-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826344	129826344	Splice_Site	G	T	e61-1
OV	TCGA-25-1316-01	C2	ENST00000418949.2,ENST00000299367.5	chr6	31895731:31895941:31896508:31896694:31901386:31901560,	31896509	31896694	31896508	31896508	Splice_Site	G	A	e3-1
OV	TCGA-13-1411-01	C6orf89	ENST00000510325.2,ENST00000480824.2,ENST00000355190.3,ENST00000373685.1,ENST00000359359.2	chr6	36884220:36884350:36887353:36887477:36891122:36891298,	36887354	36887477	36887353	36887353	Splice_Site	G	A	e7-1
OV	TCGA-13-0760-01	DSP	ENST00000418664.2,ENST00000379802.3	chr6	7558348:7558497:7559458:7559633:7562884:7563013,	7559459	7559633	7559457	7559457	Splice_Site	A	G	e4-2
OV	TCGA-13-0893-01	ZNF12	ENST00000405858.1,ENST00000342651.5,ENST00000404360.1	chr7	6732232:6732334:6736969:6737065:6737315:6737442,	6736970	6737065	6736969	6736969	Splice_Site	C	A	e3+1
OV	TCGA-13-1497-01	ANGPT1	ENST00000520052.1,ENST00000297450.3	chr8	108315467:108315595:108334126:108334356:108348377:108348499,	108334127	108334356	108334357	108334357	Splice_Site	C	T	e4-1
OV	TCGA-13-1497-01	ANGPT1	ENST00000517746.1,ENST00000520734.1	chr8	108315467:108315595:108334123:108334356:108348377:108348499,	108334124	108334356	108334357	108334357	Splice_Site	C	T	e4-1
OV	TCGA-13-1411-01	PHF20L1	ENST00000220847.7,ENST00000460236.1,ENST00000395390.2,ENST00000395386.2	chr8	133849956:133850056:133851631:133851827:133854759:133855120,	133851632	133851827	133851828	133851828	Splice_Site	G	A	e17+1
OV	TCGA-23-1118-01	GSR	ENST00000521479.1,ENST00000221130.5,ENST00000520888.1,ENST00000523295.1,ENST00000541648.1,ENST00000546342.1,ENST00000537535.1,ENST00000414019.1	chr8	30565588:30565658:30567330:30567419:30569578:30569605,	30567331	30567419	30567420	30567420	Splice_Site	C	C	e3-1
OV	TCGA-13-0726-01	TERF1	ENST00000522018.1,ENST00000517390.1,ENST00000276603.5,ENST00000276602.6	chr8	73934467:73934537:73937056:73937206:73939174:73939271,	73937057	73937206	73937056	73937056	Splice_Site	G	A	e5-1
OV	TCGA-24-1427-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000309536.2,ENST00000520818.1	chr8	92346522:92346675:92350377:92350460:92352631:92352704,	92350378	92350460	92350462	92350462	Splice_Site	T	G	e6+2
OV	TCGA-13-0884-01	C5	ENST00000223642.1	chr9	123779639:123779789:123779920:123780130:123782253:123782457,	123779921	123780130	123780131	123780131	Splice_Site	C	G	e13-1
OV	TCGA-13-0795-01	FMR1	ENST00000370477.1,ENST00000334557.6,ENST00000370470.1,ENST00000370471.3,ENST00000439526.2,ENST00000370475.4,ENST00000218200.8	chrX	147007057:147007151:147009839:147009911:147010176:147010325,	147009840	147009911	147009912	147009912	Splice_Site	G	T	e4+1
OV	TCGA-24-1436-01	ZNF185	ENST00000318529.8,ENST00000535861.1,ENST00000324823.6,ENST00000449285.2,ENST00000370268.4,ENST00000539731.1,ENST00000426821.2,ENST00000454925.1,ENST00000318504.7	chrX	152137925:152138028:152138986:152139085:152139817:152142015,	152138987	152139085	152138985	152138985	Splice_Site	A	G	e22-2
OV	TCGA-13-1412-01	CLIC2	ENST00000369449.2,ENST00000465553.1,ENST00000491205.1	chrX	154509250:154509357:154528097:154528223:154528348:154528458,	154528098	154528223	154528097	154528097	Splice_Site	C	T	e3+1
PAAD	TCGA-IB-A6UF-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345673	122345673	Splice_Site	G	-	.
PAAD	TCGA-IB-A6UF-01	PLCB3	ENST00000279230.6,ENST00000325234.5,ENST00000540288.1	chr11	64030147:64030280:64030969:64031069:64031162:64031267,	64030970	64031069	64031070	64031070	Splice_Site	G	T	.
PAAD	TCGA-IB-A6UF-01	SKA3	ENST00000298260.4	chr13	21742360:21742538:21746477:21746643:21746758:21746820,21742360:21742538:21746477:21746643:21750513:21750612,	21746478	21746643	21746645	21746645	Splice_Site	T	G	.
PAAD	TCGA-FB-AAQ2-01	MFF	ENST00000409616.1,ENST00000349901.7	chr2	228197134:228197304:228205007:228205096:228211941:228211990,228197134:228197304:228205007:228205096:228220392:228220477,228197134:228197304:228205007:228205096:228217229:228217289,	228205008	228205096	228205097	228205097	Splice_Site	G	A	.
PAAD	TCGA-HZ-7919-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000337620.4	chr7	26245987:26246130:26248012:26248175:26251281:26251337,	26248013	26248175	26248012	26248012	Splice_Site	G	A	.
PAAD	TCGA-IB-AAUP-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-US-A774-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-US-A774-01	PLD5	ENST00000442594.2,ENST00000366545.4	chr1	242428663:242428750:242451663:242451832:242511407:242511544,242428663:242428750:242451663:242451832:242511400:242511544,	242451664	242451832	242451663	242451663	Splice_Site	C	T	.
PAAD	TCGA-FB-AAPU-01	CABP1	ENST00000316803.3,ENST00000351200.2,ENST00000288616.3,ENST00000453000.1	chr12	121097998:121098142:121098533:121098643:121098873:121099021,	121098534	121098643	121098645	121098645	Splice_Site	T	C	.
PAAD	TCGA-FB-AAPU-01	C1QB	ENST00000432749.2	chr1	22979681:22979796:22985932:22986136:22987304:22987331,22980500:22980653:22985932:22986136:22987304:22987385,	22985933	22986136	22986137	22986137	Splice_Site	G	A	.
PAAD	TCGA-FB-AAPU-01	INTS9	ENST00000416984.2,ENST00000523436.1,ENST00000520983.1,ENST00000518510.1,ENST00000520831.1,ENST00000521022.1	chr8	28707729:28707790:28716952:28717080:28747390:28747426,	28716953	28717080	28717081	28717081	Splice_Site	C	A	.
PAAD	TCGA-YH-A8SY-01	ELAVL4	ENST00000448907.2,ENST00000371821.1,ENST00000371823.4,ENST00000371819.1,ENST00000357083.4,ENST00000371827.1,ENST00000371824.1	chr1	50610628:50610869:50642760:50642864:50659436:50659590,	50642761	50642864	50642759	50642759	Splice_Site	A	G	.
PAAD	TCGA-2L-AAQI-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44870205:44870264:44879854:44879975:44894175:44894230,	44879855	44879975	44879977	44879977	Splice_Site	T	A	.
PAAD	TCGA-IB-AAUS-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306433	179306433	Splice_Site	T	A	.
PAAD	TCGA-US-A77E-01	LAPTM4B	ENST00000521545.2	chr8	98788076:98788336:98817580:98817692:98827555:98827629,	98817581	98817692	98817579	98817579	Splice_Site	A	T	.
PAAD	TCGA-FB-A5VM-01	ELMO1	ENST00000464262.2	chr7	36909997:36910080:36917614:36917722:36927164:36927277,36909997:36910080:36917614:36917722:36934458:36934622,	36917615	36917722	36917614	36917614	Splice_Site	C	T	.
PAAD	TCGA-IB-7891-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
PAAD	TCGA-YY-A8LH-01	NFKBIZ	ENST00000326172.5,ENST00000394054.2,ENST00000326151.5,ENST00000483180.1	chr3	101574576:101574746:101575916:101576027:101576135:101576303,	101575917	101576027	101576029	101576029	Splice_Site	T	A	.
PAAD	TCGA-F2-A44H-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-XD-AAUG-01	TYRO3	ENST00000568343.1	chr15	41864640:41864762:41865214:41865309:41865505:41865575,	41865215	41865309	41865311	41865311	Splice_Site	T	C	.
PAAD	TCGA-XD-AAUG-01	TYRO3	ENST00000560162.1,ENST00000263798.3,ENST00000559851.1,ENST00000559066.1	chr15	41864640:41864762:41865199:41865309:41865505:41865575,	41865200	41865309	41865311	41865311	Splice_Site	T	C	.
PAAD	TCGA-IB-7893-01	HERC1	ENST00000443617.2,ENST00000559886.1	chr15	64047427:64047524:64048635:64048947:64050373:64050568,	64048636	64048947	64048949	64048949	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	ARNTL	ENST00000529388.1,ENST00000533520.1,ENST00000396441.3,ENST00000389708.3,ENST00000361003.4,ENST00000403290.1,ENST00000389707.4,ENST00000527998.1	chr11	13375847:13375995:13378285:13378324:13378601:13378643,	13378286	13378324	13378325	13378325	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	VIPR1	ENST00000439731.1	chr3	42567378:42567485:42568884:42568988:42569482:42569615,42567378:42567485:42568884:42568988:42572270:42572389,	42568885	42568988	42568884	42568884	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	BIRC6	ENST00000421745.2	chr2	32670588:32670736:32673862:32673996:32678875:32679010,	32673863	32673996	32673997	32673997	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	DSP	ENST00000418664.2,ENST00000506617.1,ENST00000379802.3	chr6	7559518:7559633:7562884:7563013:7563968:7564019,	7562885	7563013	7563014	7563014	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	48993470:48993591:48993952:48994107:48996635:48996837,	48993953	48994107	48994109	48994109	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	SCNN1B	ENST00000568085.1	chr16	23379176:23379280:23382619:23382783:23387058:23387176,	23382620	23382783	23382619	23382619	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	ATP6V0A4	ENST00000353492.4,ENST00000393054.1,ENST00000310018.2	chr7	138391270:138391462:138394368:138394540:138400508:138400626,	138394369	138394540	138394541	138394541	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	DDX41	ENST00000330503.7,ENST00000503078.1,ENST00000505081.1,ENST00000507900.1,ENST00000507955.1,ENST00000504807.1	chr5	176939780:176939877:176940011:176940083:176940353:176940485,	176940012	176940083	176940011	176940011	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	SLC45A4	ENST00000024061.3,ENST00000517878.1,ENST00000433583.2,ENST00000519067.1	chr8	142225857:142226069:142227188:142227288:142228109:142229128,	142227189	142227288	142227289	142227289	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2,ENST00000430789.1	chr2	100368682:100368763:100453938:100453986:100623093:100623307,	100453939	100453986	100453987	100453987	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	NOVA1	ENST00000267422.7,ENST00000483536.2,ENST00000549146.1,ENST00000449198.2,ENST00000539517.2,ENST00000549571.1	chr14	26918057:26918169:26941525:26941597:26949182:26949349,	26941526	26941597	26941524	26941524	Splice_Site	A	C	.
PAAD	TCGA-IB-7651-01	PRLR	ENST00000509140.1,ENST00000513753.1,ENST00000382002.5,ENST00000231423.3,ENST00000511486.1,ENST00000508107.1,ENST00000542609.1,ENST00000310101.5,ENST00000342362.5	chr5	35068331:35068387:35068880:35068980:35070225:35070367,	35068881	35068980	35068880	35068880	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	UBA2	ENST00000586313.1	chr19	34919388:34919475:34925772:34925873:34929549:34929648,	34925773	34925873	34925772	34925772	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290635	108290635	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	PDE8A	ENST00000478717.1,ENST00000557954.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000558543.1,ENST00000560789.1,ENST00000557819.2,ENST00000557957.1,ENST00000559742.1	chr15	85643386:85643429:85652283:85652361:85656607:85656631,	85652284	85652361	85652283	85652283	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	SKA1	ENST00000398452.2,ENST00000285116.3,ENST00000494518.1	chr18	47908498:47908596:47911585:47911723:47917493:47917663,	47911586	47911723	47911724	47911724	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	CD276	ENST00000559978.1,ENST00000318443.5,ENST00000561176.1,ENST00000560928.1,ENST00000318424.5,ENST00000564751.1,ENST00000559073.1,ENST00000537340.2	chr15	74001988:74002030:74003475:74003511:74005274:74005297,	74003476	74003511	74003513	74003513	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3,ENST00000359586.6	chr10	124331829:124331877:124333230:124333278:124335914:124336238,	124333231	124333278	124333230	124333230	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107615678:107615858:107616133:107616322:107618491:107618612,	107616134	107616322	107616323	107616323	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	TEAD4	ENST00000543035.1,ENST00000359864.2,ENST00000397122.2	chr12	3120209:3120234:3121335:3121398:3126563:3126692,	3121336	3121398	3121335	3121335	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	LPL	ENST00000311322.8	chr8	19813351:19813594:19816770:19816891:19818411:19818594,	19816771	19816891	19816893	19816893	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	GIPC2	ENST00000370759.3	chr1	78511585:78512018:78546358:78546544:78560635:78560816,	78546359	78546544	78546358	78546358	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	TGM4	ENST00000296125.4	chr3	44926816:44926990:44929180:44929287:44932094:44932224,	44929181	44929287	44929289	44929289	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	ANKRD28	ENST00000399451.2,ENST00000451422.1,ENST00000498524.1,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15755033:15755148:15756084:15756163:15762421:15762629,	15756085	15756163	15756164	15756164	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	PITPNC1	ENST00000581322.1,ENST00000335257.6	chr17	65665623:65665779:65671594:65671658:65683181:65683300,65665623:65665779:65671594:65671658:65688687:65689129,	65671595	65671658	65671660	65671660	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	SPNS1	ENST00000323081.8,ENST00000565975.1,ENST00000568829.1,ENST00000334536.8,ENST00000311008.11,ENST00000352260.7	chr16	28994512:28994611:28995106:28995278:28995525:28995760,	28995107	28995278	28995106	28995106	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	ZNF101	ENST00000318110.5,ENST00000592502.1,ENST00000415784.2	chr19	19788672:19788795:19789534:19789595:19789989:19790332,19788672:19788799:19789534:19789595:19789989:19790314,	19789535	19789595	19789533	19789533	Splice_Site	A	C	.
PAAD	TCGA-IB-7651-01	ZNF467	ENST00000484747.1,ENST00000302017.3	chr7	149466178:149466289:149467528:149467645:149468087:149468163,	149467529	149467645	149467528	149467528	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	FERMT1	ENST00000217289.4	chr20	6088178:6088281:6090944:6091158:6093123:6093270,	6090945	6091158	6091159	6091159	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	DPP4	ENST00000490286.1,ENST00000494507.1,ENST00000360534.3,ENST00000434918.2,ENST00000491591.1	chr2	162862254:162862319:162865071:162865171:162865750:162865805,	162865072	162865171	162865071	162865071	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	ITCH	ENST00000483727.1,ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33049897:33050026:33057852:33057925:33059248:33059320,	33057853	33057925	33057852	33057852	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	TMED10	ENST00000555873.1,ENST00000555085.1	chr14	75614366:75614440:75618734:75618846:75643057:75643300,	75618735	75618846	75618848	75618848	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693796	47693796	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	SMARCD1	ENST00000548573.1,ENST00000381513.4,ENST00000394963.4,ENST00000551966.1	chr12	50482307:50482420:50483666:50483768:50484023:50484109,	50483667	50483768	50483666	50483666	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	PLCB2	ENST00000557821.1,ENST00000456256.2,ENST00000558588.1,ENST00000260402.3	chr15	40582961:40583038:40583218:40583384:40583465:40583531,	40583219	40583384	40583386	40583386	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	CDK5RAP3	ENST00000584168.1,ENST00000584063.1,ENST00000580287.1	chr17	46052537:46052703:46052879:46053379:46054077:46054137,	46052880	46053379	46052879	46052879	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	EPB41L2	ENST00000368128.2,ENST00000530481.1,ENST00000525193.1,ENST00000528282.1,ENST00000529208.1,ENST00000445890.2,ENST00000525271.1,ENST00000392427.3,ENST00000527411.1,ENST00000527659.1,ENST00000337057.3	chr6	131247744:131247849:131276244:131276457:131277133:131277625,	131276245	131276457	131276458	131276458	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	HNRNPR	ENST00000374616.3,ENST00000302271.6,ENST00000374612.1,ENST00000478691.1,ENST00000476451.1	chr1	23648020:23648156:23650048:23650225:23664246:23664354,23648020:23648156:23650048:23650225:23660010:23660124,	23650049	23650225	23650226	23650226	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	IFT172	ENST00000260570.3	chr2	27680505:27680622:27680707:27680843:27680992:27681090,	27680708	27680843	27680845	27680845	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	SETDB1	ENST00000368963.1	chr1	150913804:150913904:150915038:150915164:150916395:150916469,	150915039	150915164	150915038	150915038	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	NSMCE4A	ENST00000369023.3,ENST00000369017.5,ENST00000538652.1,ENST00000468209.1,ENST00000489266.1	chr10	123722752:123722843:123724800:123724900:123727169:123727321,	123724801	123724900	123724800	123724800	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	ODF2	ENST00000444993.2,ENST00000351030.3	chr9	131221845:131221936:131222828:131222945:131223220:131223289,	131222829	131222945	131222946	131222946	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	ODF2	ENST00000448249.3,ENST00000469582.2,ENST00000535026.1	chr9	131221845:131221936:131222791:131222945:131223220:131223289,	131222792	131222945	131222946	131222946	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	NOTCH3	ENST00000263388.2	chr19	15292386:15292612:15295105:15295261:15295716:15295830,	15295106	15295261	15295262	15295262	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	PRSS21	ENST00000570594.1,ENST00000570629.1,ENST00000005995.3,ENST00000450020.3,ENST00000574813.1	chr16	2867300:2867333:2867430:2867457:2867801:2867967,	2867431	2867457	2867430	2867430	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	KBTBD3	ENST00000526793.1	chr11	105925079:105925182:105929591:105929836:105947233:105947366,105925079:105925182:105929591:105929836:105948038:105948075,	105929592	105929836	105929591	105929591	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	WNK2	ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96015164:96015364:96018580:96018736:96019229:96019421,	96018581	96018736	96018580	96018580	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52356424:52356791:52357823:52357896:52360155:52360330,	52357824	52357896	52357823	52357823	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	WDR3	ENST00000349139.5	chr1	118499690:118499819:118501532:118501626:118501914:118509165,	118501533	118501626	118501532	118501532	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	SLC25A25	ENST00000373069.5,ENST00000373064.5,ENST00000373066.5,ENST00000433501.1,ENST00000432073.2,ENST00000373068.2	chr9	130864648:130864760:130865959:130866118:130868007:130868160,	130865960	130866118	130865959	130865959	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119065035:119065229:119093522:119093636:119094611:119094747,	119093523	119093636	119093522	119093522	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	CNBP	ENST00000500450.2	chr3	128890288:128890381:128890497:128890614:128902618:128902707,128890288:128890351:128890497:128890614:128902618:128902707,	128890498	128890614	128890615	128890615	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	CNBP	ENST00000504813.1	chr3	128890288:128890381:128890476:128890614:128902618:128902707,128890288:128890351:128890476:128890614:128902618:128902707,	128890477	128890614	128890615	128890615	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	CNBP	ENST00000512338.1	chr3	128890288:128890381:128890494:128890614:128902618:128902707,	128890495	128890614	128890615	128890615	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	DENND4A	ENST00000443035.3,ENST00000431932.2	chr15	65960262:65960461:65962116:65962263:65962350:65962526,	65962117	65962263	65962264	65962264	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	LGALS12	ENST00000415491.2,ENST00000425950.2,ENST00000340246.5,ENST00000255684.5,ENST00000394618.3	chr11	63279223:63279312:63283034:63283185:63283718:63284181,	63283035	63283185	63283034	63283034	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2,ENST00000460062.2	chr20	476383:476446:478364:478424:479898:479949,	478365	478424	478425	478425	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	PRSS16	ENST00000466364.1	chr6	27219528:27219819:27222471:27222651:27222764:27222898,27220586:27220728:27222471:27222651:27222764:27222898,27215673:27215827:27222471:27222651:27222764:27222898,	27222472	27222651	27222471	27222471	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509502	102509502	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	TPM2	ENST00000378292.3	chr9	35684484:35684547:35685060:35685136:35685265:35685336,	35685061	35685136	35685060	35685060	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46250972:46251074:46252654:46252827:46254124:46254225,	46252655	46252827	46252654	46252654	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	LMBR1	ENST00000461469.1,ENST00000540390.1,ENST00000444719.1,ENST00000434278.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1	chr7	156556396:156556489:156589082:156589186:156619298:156619438,	156589083	156589186	156589187	156589187	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	RAB7A	ENST00000491681.1,ENST00000482525.1	chr3	128445194:128445202:128514202:128514263:128516785:128516879,	128514203	128514263	128514202	128514202	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	RNF4	ENST00000511843.1,ENST00000314289.8,ENST00000502316.1,ENST00000509258.1,ENST00000511600.1,ENST00000511859.1,ENST00000507247.1,ENST00000509388.1,ENST00000506706.1	chr4	2498733:2498848:2502385:2502465:2513682:2513692,	2502386	2502465	2502385	2502385	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	TYW3	ENST00000483990.1,ENST00000479111.1,ENST00000370867.3	chr1	75202225:75202306:75204373:75204472:75214434:75214506,	75204374	75204472	75204373	75204373	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	INPP5D	ENST00000538935.1,ENST00000359570.5,ENST00000415617.1,ENST00000455936.2,ENST00000493632.1,ENST00000465281.1,ENST00000435188.1,ENST00000450745.1,ENST00000445964.1	chr2	234079709:234079798:234085910:234085992:234091055:234091128,	234085911	234085992	234085994	234085994	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	SLC4A10	ENST00000446228.1,ENST00000446997.1,ENST00000375514.5,ENST00000415876.2	chr2	162833269:162833386:162834231:162834270:162839688:162839755,	162834232	162834270	162834231	162834231	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	NUDT14	ENST00000550002.1	chr14	105643077:105643108:105643299:105643328:105644028:105644072,	105643300	105643328	105643299	105643299	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	NUDT14	ENST00000392568.2,ENST00000551024.1,ENST00000339418.5	chr14	105643077:105643108:105643299:105643364:105644028:105644072,	105643300	105643364	105643299	105643299	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000557060.1,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64540705:64540854:64542662:64542818:64545183:64545324,	64542663	64542818	64542662	64542662	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	ACAT1	ENST00000265838.4	chr11	108013163:108013277:108014709:108014774:108016928:108017086,	108014710	108014774	108014709	108014709	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	CDC20B	ENST00000513180.1,ENST00000381375.2,ENST00000296733.1,ENST00000334206.5	chr5	54415645:54415746:54416252:54416378:54420630:54420856,	54416253	54416378	54416252	54416252	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	KANSL3	ENST00000354204.6,ENST00000597150.1,ENST00000599854.1,ENST00000447759.1,ENST00000440133.1,ENST00000431828.1,ENST00000444759.1	chr2	97267379:97267513:97267852:97268075:97268489:97268599,	97267853	97268075	97268076	97268076	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132166741:132166783:132169490:132169691:132172141:132172348,	132169491	132169691	132169692	132169692	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	ADAM12	ENST00000368679.4,ENST00000368676.4	chr10	127782553:127782702:127786984:127787069:127789640:127789810,	127786985	127787069	127786984	127786984	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	PPEF1	ENST00000543630.1,ENST00000544635.1,ENST00000349874.5,ENST00000379962.3,ENST00000361511.4,ENST00000359763.6	chrX	18842040:18842204:18843868:18843953:18845393:18845665,	18843869	18843953	18843868	18843868	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	RABGAP1L	ENST00000357444.6,ENST00000251507.4,ENST00000457696.1,ENST00000367689.3	chr1	174221617:174221728:174241551:174241618:174244970:174245073,	174241552	174241618	174241551	174241551	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	FANCA	ENST00000564969.1,ENST00000568626.1	chr16	89806401:89806507:89807211:89807274:89809207:89809236,89806401:89806507:89807211:89807274:89811366:89811416,	89807212	89807274	89807275	89807275	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	GSTA4	ENST00000370960.1,ENST00000370963.4,ENST00000370959.1,ENST00000486559.1,ENST00000541324.1,ENST00000477599.1	chr6	52843261:52843390:52847371:52847503:52849261:52849403,	52847372	52847503	52847504	52847504	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	UEVLD	ENST00000379387.4,ENST00000396197.3,ENST00000396196.2,ENST00000540666.1	chr11	18553931:18554034:18557952:18558016:18566169:18566224,18555876:18556000:18557952:18558016:18566169:18566343,	18557953	18558016	18557951	18557951	Splice_Site	A	G	.
PAAD	TCGA-IB-7651-01	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21936067:21936139:21936612:21936768:21937944:21938074,	21936613	21936768	21936611	21936611	Splice_Site	A	G	.
PAAD	TCGA-IB-7651-01	PLA2G4D	ENST00000290472.3	chr15	42373314:42373331:42373676:42373812:42373994:42374032,	42373677	42373812	42373813	42373813	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	INTS1	ENST00000468115.1,ENST00000404767.3	chr7	1524733:1524838:1524925:1525105:1526260:1526410,	1524926	1525105	1525106	1525106	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	CDHR2	ENST00000261944.5,ENST00000510636.1,ENST00000506348.1	chr5	176004637:176004799:176005034:176005096:176005365:176005609,	176005035	176005096	176005098	176005098	Splice_Site	T	C	.
PAAD	TCGA-IB-7651-01	ARHGDIA	ENST00000269321.7,ENST00000541078.2,ENST00000584461.1,ENST00000580685.1,ENST00000583868.1,ENST00000400721.4,ENST00000583111.1,ENST00000579121.1	chr17	79827205:79827282:79827417:79827501:79827616:79827629,	79827418	79827501	79827416	79827416	Splice_Site	A	G	.
PAAD	TCGA-IB-7651-01	MAP2K7	ENST00000397979.3,ENST00000397981.3,ENST00000397983.3	chr19	7974639:7974781:7974947:7975014:7975144:7975258,	7974948	7975014	7974947	7974947	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19087088:19087154:19089409:19089557:19093168:19093211,	19089410	19089557	19089409	19089409	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	CYLD	ENST00000564326.1,ENST00000566206.1,ENST00000311559.9,ENST00000569891.1,ENST00000540145.1,ENST00000427738.3,ENST00000398568.2,ENST00000563629.1,ENST00000569418.1	chr16	50813605:50813955:50815156:50815322:50816235:50816377,	50815157	50815322	50815323	50815323	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	RNF39	ENST00000376751.3,ENST00000244360.6	chr6	30039175:30039468:30040933:30041025:30041232:30041255,	30040934	30041025	30041026	30041026	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	TPP1	ENST00000533371.1,ENST00000299427.6	chr11	6637653:6637734:6637891:6638090:6638205:6638384,	6637892	6638090	6637890	6637890	Splice_Site	A	G	.
PAAD	TCGA-IB-7651-01	SLC2A9	ENST00000505104.1,ENST00000309065.3,ENST00000506583.1	chr4	10020598:10020697:10027527:10027630:10041753:10041834,	10027528	10027630	10027631	10027631	Splice_Site	C	A	.
PAAD	TCGA-IB-7651-01	APLP1	ENST00000221891.4	chr19	36359464:36359685:36360568:36360712:36361797:36361930,	36360569	36360712	36360568	36360568	Splice_Site	G	T	.
PAAD	TCGA-IB-7651-01	SSRP1	ENST00000529002.1	chr11	57100908:57101014:57101936:57102122:57103203:57103347,	57101937	57102122	57102123	57102123	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	SH3RF1	ENST00000508685.1,ENST00000284637.9	chr4	170043250:170043417:170051196:170051307:170057468:170057771,	170051197	170051307	170051308	170051308	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	SPTAN1	ENST00000461855.1,ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131367574:131367756:131369882:131369982:131370130:131370268,	131369883	131369982	131369983	131369983	Splice_Site	G	A	.
PAAD	TCGA-IB-7651-01	OPCML	ENST00000524381.1	chr11	132526981:132527214:132812820:132812905:133402158:133402297,	132812821	132812905	132812820	132812820	Splice_Site	C	T	.
PAAD	TCGA-IB-7651-01	IRF1	ENST00000405885.2,ENST00000245414.4	chr5	131820086:131820189:131821358:131821408:131821942:131822065,	131821359	131821408	131821409	131821409	Splice_Site	C	T	.
PAAD	TCGA-HZ-8315-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
PAAD	TCGA-FB-AAQ3-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205713	115205713	Splice_Site	G	T	.
PAAD	TCGA-IB-7649-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-IB-7649-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	T	.
PAAD	TCGA-2J-AAB4-01	ACTB	ENST00000462494.1,ENST00000425660.1,ENST00000331789.5	chr7	5568912:5569031:5569165:5569294:5570154:5570214,	5569166	5569294	5569164	5569164	Splice_Site	A	C	.
PAAD	TCGA-2J-AAB4-01	ACTB	ENST00000484841.1	chr7	5568912:5569031:5569165:5569364:5570154:5570214,	5569166	5569364	5569164	5569164	Splice_Site	A	C	.
PAAD	TCGA-F2-A44G-01	METTL14	ENST00000506780.1	chr4	119606569:119606755:119609077:119609166:119610524:119610584,	119609078	119609166	119609076	119609076	Splice_Site	A	G	.
PAAD	TCGA-Q3-AA2A-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
PAAD	TCGA-F2-A8YN-01	DENND1C	ENST00000543576.1,ENST00000590818.1,ENST00000590867.1,ENST00000381480.2	chr19	6470305:6470377:6471275:6471316:6471416:6471507,	6471276	6471316	6471275	6471275	Splice_Site	C	T	.
PAAD	TCGA-IB-A7LX-01	GPR158	ENST00000376351.3	chr10	25684839:25684942:25701178:25701402:25755579:25755648,	25701179	25701402	25701403	25701403	Splice_Site	G	T	.
PAAD	TCGA-HZ-8005-01	ENY2	ENST00000517311.1,ENST00000523335.1,ENST00000518584.1,ENST00000521688.1	chr8	110346574:110346631:110348356:110348433:110351548:110351619,110346605:110346703:110348356:110348433:110351548:110351619,	110348357	110348433	110348356	110348356	Splice_Site	G	A	.
PAAD	TCGA-HZ-8005-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
PAAD	TCGA-HZ-8005-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	T	.
PAAD	TCGA-HZ-A8P0-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
PAAD	TCGA-IB-7889-01	BBS9	ENST00000354265.4,ENST00000242067.6,ENST00000434373.1,ENST00000350941.3,ENST00000433714.1,ENST00000396127.2,ENST00000355070.2	chr7	33397466:33397607:33407378:33407474:33423277:33423450,	33407379	33407474	33407475	33407475	Splice_Site	G	A	.
PAAD	TCGA-3A-A9J0-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
PAAD	TCGA-IB-7645-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649473	52649473	Splice_Site	C	T	.
PAAD	TCGA-HZ-A49H-01	SKA3	ENST00000314759.5,ENST00000298260.4	chr13	21728835:21729289:21732060:21732264:21734040:21734126,21729831:21729950:21732060:21732264:21734040:21734126,	21732061	21732264	21732266	21732266	Splice_Site	T	A	.
PAAD	TCGA-HZ-A49H-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205713	115205713	Splice_Site	G	T	.
PAAD	TCGA-IB-A5SO-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
PAAD	TCGA-OE-A75W-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
PAAD	TCGA-3A-A9IU-01	VPS33B	ENST00000333371.3,ENST00000535906.1,ENST00000574755.1,ENST00000554264.1,ENST00000556096.2,ENST00000535843.1	chr15	91553030:91553076:91557033:91557101:91557613:91557663,	91557034	91557101	91557033	91557033	Splice_Site	C	T	.
PAAD	TCGA-HZ-A77Q-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000309536.2,ENST00000522181.1	chr8	92355580:92355694:92364037:92364115:92365128:92365224,	92364038	92364115	92364116	92364116	Splice_Site	G	C	.
PAAD	TCGA-FB-A4P6-01	SLC25A36	ENST00000507429.1,ENST00000324194.6,ENST00000393015.4,ENST00000502594.1	chr3	140660742:140660937:140675368:140675533:140681968:140682069,140660742:140660937:140675368:140675533:140678304:140678382,	140675369	140675533	140675367	140675367	Splice_Site	A	T	.
PAAD	TCGA-FB-A545-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205713	115205713	Splice_Site	G	T	.
PAAD	TCGA-S4-A8RP-01	SGK1	ENST00000525877.1,ENST00000528577.1,ENST00000477460.2,ENST00000367858.5,ENST00000367857.5,ENST00000367855.3,ENST00000237305.7,ENST00000413996.3,ENST00000475719.2,ENST00000489458.2	chr6	134492788:134492870:134493330:134493454:134493799:134493877,	134493331	134493454	134493456	134493460	Splice_Site	TGTAA	-	.
PAAD	TCGA-IB-7885-01	MVB12B	ENST00000361171.3,ENST00000436593.3	chr9	129157918:129157976:129184132:129184227:129243647:129243703,	129184133	129184227	129184132	129184132	Splice_Site	G	A	.
PAAD	TCGA-US-A776-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-HZ-8317-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205713	115205713	Splice_Site	G	T	.
PAAD	TCGA-HZ-7926-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
PAAD	TCGA-HZ-7926-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-IB-7646-01	DHX40	ENST00000580030.1,ENST00000577596.1,ENST00000584385.1,ENST00000251241.4,ENST00000451169.2	chr17	57647878:57648024:57650476:57650596:57651100:57651117,	57650477	57650596	57650476	57650476	Splice_Site	G	A	.
PAAD	TCGA-HV-A7OL-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448270	56448270	Splice_Site	A	G	.
PAAD	TCGA-FB-A78T-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
PAAD	TCGA-HZ-A77P-01	HSD17B12	ENST00000278353.4,ENST00000527213.1,ENST00000531185.1,ENST00000532864.1	chr11	43837896:43837941:43852525:43852560:43859866:43859945,	43852526	43852560	43852525	43852525	Splice_Site	G	T	.
PAAD	TCGA-LB-A7SX-01	CWF19L2	ENST00000532251.1,ENST00000282251.5	chr11	107205606:107205687:107207283:107207439:107219662:107219779,	107207284	107207439	107207441	107207442	Splice_Site	-	A	.
PAAD	TCGA-LB-A7SX-01	ABLIM1	ENST00000481974.1,ENST00000533213.2,ENST00000369252.4,ENST00000369256.2,ENST00000392955.3,ENST00000277895.5	chr10	116307408:116307535:116331055:116331165:116335174:116335296,	116331056	116331165	116331054	116331054	Splice_Site	A	C	.
PAAD	TCGA-HZ-7925-01	MATR3	ENST00000394800.2,ENST00000502422.1,ENST00000509990.1,ENST00000505625.1,ENST00000502929.1,ENST00000503811.1,ENST00000502499.1,ENST00000361059.2,ENST00000394805.3,ENST00000504203.1	chr5	138661128:138661351:138661851:138661973:138665033:138665093,	138661852	138661973	138661850	138661850	Splice_Site	A	T	.
PAAD	TCGA-2L-AAQE-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-HV-A5A6-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000540438.1,ENST00000260188.5	chr11	113675394:113675473:113675589:113675768:113679019:113679159,	113675590	113675768	113675589	113675589	Splice_Site	C	T	.
PAAD	TCGA-HV-A5A6-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-HV-A5A6-01	SIKE1	ENST00000060969.5,ENST00000510745.1,ENST00000369528.5	chr1	115316965:115316993:115318966:115319080:115321762:115321905,	115318967	115319080	115318966	115318966	Splice_Site	C	G	.
PAAD	TCGA-2J-AABR-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-RB-AA9M-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-HZ-A9TJ-06	WTAP	ENST00000337387.4,ENST00000358372.4	chr6	160160021:160160077:160163119:160163178:160164696:160164726,	160163120	160163178	160163179	160163180	Splice_Site	-	T	.
PAAD	TCGA-HZ-8001-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205713	115205713	Splice_Site	G	T	.
PAAD	TCGA-3A-A9I9-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000557998.1,ENST00000348370.4,ENST00000561186.1	chr15	59350554:59350749:59358962:59359282:59368152:59368414,	59358963	59359282	59359283	59359283	Splice_Site	G	C	.
PAAD	TCGA-2J-AABH-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
PAAD	TCGA-IB-8127-01	ANKRD28	ENST00000399451.2,ENST00000451422.1,ENST00000498524.1,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15727728:15727816:15731525:15731727:15736245:15736320,	15731526	15731727	15731728	15731728	Splice_Site	C	T	.
PAAD	TCGA-IB-8127-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-HZ-A9TJ-01	WTAP	ENST00000337387.4,ENST00000358372.4	chr6	160160021:160160077:160163119:160163178:160164696:160164726,	160163120	160163178	160163179	160163180	Splice_Site	-	T	.
PAAD	TCGA-HZ-A9TJ-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PAAD	TCGA-3E-AAAZ-01	CDC73	ENST00000367435.3	chr1	193121509:193121574:193172924:193172982:193181194:193181230,	193172925	193172982	193172923	193172949	Splice_Site	AGGAGGGTGCATCTGCCCGGAAGACTC	-	p.T325_splice
PAAD	TCGA-3E-AAAZ-01	CDC73	ENST00000367435.3	chr1	193121509:193121574:193172924:193172982:193181194:193181230,	193172925	193172982	193172923	193172949	Splice_Site	AGGAGGGTGCATCTGCCCGGAAGACTC	-	p.GGCICPEDS325del
PCPG	TCGA-QR-A70A-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300871	179300871	Splice_Site	C	T	.
PCPG	TCGA-QR-A6GS-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541604	29541604	Splice_Site	G	T	.
PCPG	TCGA-WB-A80M-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000483030.1,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115266503:115266623:115267841:115267954:115268831:115268969,	115267842	115267954	115267956	115267956	Splice_Site	T	A	.
PCPG	TCGA-QR-A6GW-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301047	179301047	Splice_Site	C	T	.
PCPG	TCGA-SP-A6QC-01	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088408	10088408	Splice_Site	G	T	.
PCPG	TCGA-WB-A80Y-01	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088408	10088408	Splice_Site	G	T	.
PCPG	TCGA-WB-A81S-01	TSGA10	ENST00000542655.1	chr2	99689480:99689536:99695121:99695276:99697744:99697860,99688268:99688337:99695121:99695276:99697744:99697860,	99695122	99695276	99695278	99695278	Splice_Site	T	A	.
PCPG	TCGA-RW-A68A-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596669	136596669	Splice_Site	C	T	.
PCPG	TCGA-RW-A68A-01	SKA3	ENST00000314759.5,ENST00000465471.1,ENST00000298260.4,ENST00000400018.3	chr13	21735928:21736014:21742126:21742538:21746477:21746643,	21742127	21742538	21742125	21742125	Splice_Site	A	C	.
PCPG	TCGA-W2-A7H5-01	FRG1	ENST00000533157.1,ENST00000514482.1,ENST00000531991.2,ENST00000226798.4	chr4	190873316:190873442:190874222:190874280:190876191:190876305,	190874223	190874280	190874281	190874281	Splice_Site	G	T	.
PCPG	TCGA-SQ-A6I6-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300871	179300871	Splice_Site	C	T	.
PCPG	TCGA-RW-A7D0-01	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088408	10088408	Splice_Site	G	T	.
PCPG	TCGA-QR-A6H4-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300871	179300871	Splice_Site	C	T	.
PCPG	TCGA-QR-A700-01	ORC5	ENST00000422497.1,ENST00000297431.4,ENST00000545943.1	chr7	103805682:103805730:103807219:103807332:103808920:103808973,	103807220	103807332	103807333	103807333	Splice_Site	C	T	.
PCPG	TCGA-QT-A7U0-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865875	41865875	Splice_Site	A	T	.
PCPG	TCGA-RW-A67Y-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	A	.
PCPG	TCGA-PR-A5PG-01	PRKRA	ENST00000325748.4,ENST00000487082.1,ENST00000432031.2	chr2	179308069:179308111:179312231:179312313:179314968:179315138,179309148:179309227:179312231:179312313:179314968:179315138,	179312232	179312313	179312231	179312231	Splice_Site	C	G	.
PCPG	TCGA-PR-A5PG-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301047	179301047	Splice_Site	C	T	.
PCPG	TCGA-WB-A80P-01	ITIH1	ENST00000480409.1,ENST00000273283.2	chr3	52811610:52811748:52812012:52812033:52812355:52812522,	52812013	52812033	52812034	52812034	Splice_Site	G	A	.
PCPG	TCGA-QR-A70K-01	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088408	10088408	Splice_Site	G	T	.
PCPG	TCGA-S7-A7WT-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115269603:115269711:115272878:115273043:115273128:115273269,	115272879	115273043	115272878	115272878	Splice_Site	C	T	.
PCPG	TCGA-RW-A686-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300871	179300871	Splice_Site	C	T	.
PCPG	TCGA-SP-A6QH-01	SHC4	ENST00000332408.4,ENST00000537958.1,ENST00000557797.1,ENST00000558220.1,ENST00000396535.3	chr15	49149888:49150012:49160014:49160066:49164285:49164339,	49160015	49160066	49160067	49160067	Splice_Site	C	A	.
PCPG	TCGA-QR-A70O-01	PPP1R17	ENST00000409146.3	chr7	31735082:31735235:31736578:31736731:31746817:31747023,31732019:31732137:31736578:31736731:31746817:31747023,	31736579	31736731	31736577	31736577	Splice_Site	A	T	.
PCPG	TCGA-S7-A7WR-01	FRG1	ENST00000533157.1,ENST00000514482.1,ENST00000531991.2,ENST00000226798.4	chr4	190873316:190873442:190874222:190874280:190876191:190876305,	190874223	190874280	190874281	190874281	Splice_Site	G	T	.
PCPG	TCGA-WB-A81T-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865875	41865875	Splice_Site	A	T	.
PRAD	TCGA-HC-A6AO-01	DGKA	ENST00000548047.1,ENST00000551585.1,ENST00000551739.1,ENST00000557180.1,ENST00000551296.1,ENST00000549079.2,ENST00000402956.3,ENST00000553084.1,ENST00000552478.1,ENST00000331886.5,ENST00000555218.1,ENST00000394147.1,ENST00000551156.1	chr12	56335068:56335109:56335293:56335368:56335781:56335821,	56335294	56335368	56335369	56335369	Splice_Site	G	A	.
PRAD	TCGA-EJ-5525-01	DEPDC1	ENST00000456315.2	chr1	68947122:68947295:68947728:68948580:68949632:68949773,	68947729	68948580	68947728	68947728	Splice_Site	C	A	.
PRAD	TCGA-G9-6338-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3176447:3176526:3176672:3176834:3179058:3179114,	3176673	3176834	3176835	3176835	Splice_Site	G	C	.
PRAD	TCGA-EJ-7317-01	ACCS	ENST00000531940.1	chr11	44098828:44098926:44099394:44100334:44101080:44101157,	44099395	44100334	44100335	44100335	Splice_Site	G	T	.
PRAD	TCGA-EJ-7317-01	ACCS	ENST00000263776.8	chr11	44099394:44099472:44100233:44100334:44101080:44101157,	44100234	44100334	44100335	44100335	Splice_Site	G	T	.
PRAD	TCGA-KK-A59V-01	RAMP2	ENST00000589683.1,ENST00000588928.1,ENST00000253796.5	chr17	40913851:40913917:40914372:40914481:40914614:40914716,	40914373	40914481	40914372	40914372	Splice_Site	G	-	.
PRAD	TCGA-KK-A59V-01	UBE2U	ENST00000608020.1,ENST00000464349.1,ENST00000371077.5,ENST00000371076.3	chr1	64686546:64686590:64698243:64698332:64707334:64707416,	64698244	64698332	64698334	64698334	Splice_Site	T	C	.
PRAD	TCGA-KK-A59V-01	CMBL	ENST00000506821.1,ENST00000296658.3	chr5	10288533:10288641:10290659:10290893:10307736:10307951,	10290660	10290893	10290659	10290659	Splice_Site	C	T	.
PRAD	TCGA-EJ-5511-01	KANSL1L	ENST00000428655.1,ENST00000452086.1,ENST00000438563.1,ENST00000418791.1,ENST00000281772.9,ENST00000457374.1	chr2	210962809:210962931:210968827:210969025:210993754:210993896,	210968828	210969025	210968826	210968826	Splice_Site	A	C	.
PRAD	TCGA-G9-6356-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72032197:72032295:72036215:72036339:72037874:72038098,	72036216	72036339	72036214	72036214	Splice_Site	A	C	.
PRAD	TCGA-G9-6377-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132153381:132153462:132165318:132165394:132166164:132166314,	132165319	132165394	132165395	132165395	Splice_Site	G	T	.
PRAD	TCGA-J4-A6G1-01	LAPTM4B	ENST00000521545.2	chr8	98788076:98788336:98817580:98817692:98827555:98827629,	98817581	98817692	98817694	98817694	Splice_Site	T	C	.
PRAD	TCGA-EJ-8469-01	KIAA0753	ENST00000572370.1,ENST00000589033.1,ENST00000361413.3,ENST00000542826.2,ENST00000575027.1,ENST00000570790.1,ENST00000542606.1	chr17	6502556:6502640:6503699:6503778:6510192:6510248,	6503700	6503778	6503779	6503779	Splice_Site	C	T	.
PRAD	TCGA-EJ-7315-01	CAPN13	ENST00000450650.1	chr2	30959368:30959495:30960027:30961159:30961265:30961323,	30960028	30961159	30961160	30961160	Splice_Site	C	T	.
PRAD	TCGA-HC-7081-01	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000430352.2,ENST00000586539.1	chr17	66883476:66883647:66887629:66887737:66890313:66890451,	66887630	66887737	66887628	66887628	Splice_Site	A	G	.
PRAD	TCGA-QU-A6IM-01	TRA2A	ENST00000474586.1,ENST00000490942.1,ENST00000538367.1,ENST00000494255.1,ENST00000297071.4,ENST00000392502.4	chr7	23552643:23552701:23555981:23556147:23561325:23561459,	23555982	23556147	23556149	23556149	Splice_Site	T	A	.
PRAD	TCGA-CH-5740-01	MYO6	ENST00000430435.1	chr6	76602246:76602407:76604947:76604977:76608089:76608128,76604530:76604557:76604947:76604977:76608089:76608128,76604530:76604557:76604947:76604977:76617321:76617425,	76604948	76604977	76604978	76604978	Splice_Site	G	A	.
PRAD	TCGA-EJ-7330-01	ENO1	ENST00000234590.4,ENST00000464920.1	chr1	8921063:8921488:8922945:8923004:8923293:8923402,	8922946	8923004	8923006	8923006	Splice_Site	T	C	.
PRAD	TCGA-EJ-7330-01	CDK13	ENST00000484589.1,ENST00000181839.4,ENST00000340829.5	chr7	40041459:40041630:40085434:40085624:40087419:40087476,	40085435	40085624	40085626	40085626	Splice_Site	T	C	.
PRAD	TCGA-HC-7077-01	KCNQ1	ENST00000155840.5,ENST00000496887.2	chr11	2466612:2466714:2549157:2549248:2591857:2591928,	2549158	2549248	2549250	2549250	Splice_Site	T	C	.
PRAD	TCGA-HC-7077-01	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36270248	36270248	Splice_Site	T	C	.
PRAD	TCGA-EJ-A65B-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40688646:40688716:40689228:40689446:40692044:40692295,	40689229	40689446	40689228	40689228	Splice_Site	G	A	.
PRAD	TCGA-G9-6378-01	DMXL2	ENST00000543779.2,ENST00000251076.5	chr15	51790748:51792428:51795002:51795230:51799330:51799450,	51795003	51795230	51795002	51795002	Splice_Site	C	T	.
PRAD	TCGA-CH-5741-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000314425.5	chrX	70470281:70470576:70471027:70471094:70471407:70471451,	70471028	70471094	70471027	70471027	Splice_Site	C	A	.
PRAD	TCGA-EJ-7783-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000350494.6,ENST00000542824.1,ENST00000351393.6,ENST00000358232.6,ENST00000543861.1,ENST00000442325.2	chr18	33739720:33739793:33739920:33739978:33747063:33747185,33739720:33739793:33739920:33739978:33740894:33740967,	33739921	33739978	33739979	33739979	Splice_Site	G	T	.
PRAD	TCGA-HC-A631-01	SP3	ENST00000418194.2,ENST00000416195.1,ENST00000455789.2,ENST00000310015.6	chr2	174773259:174774985:174777797:174777994:174783320:174783513,	174777798	174777994	174777796	174777796	Splice_Site	A	G	.
PRAD	TCGA-J9-A52C-01	PIGB	ENST00000539642.1	chr15	55611470:55611611:55621921:55622052:55626064:55626205,	55621922	55622052	55621921	55621922	Splice_Site	-	T	.
PRAD	TCGA-J9-A52C-01	GMPR	ENST00000259727.4	chr6	16250514:16250598:16254792:16254966:16274645:16274727,	16254793	16254966	16254791	16254791	Splice_Site	A	G	.
PRAD	TCGA-J4-A67R-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
PRAD	TCGA-EJ-7791-01	HSD17B11	ENST00000502576.1,ENST00000507518.1,ENST00000507286.1,ENST00000358290.4	chr4	88261641:88261758:88278430:88278568:88293860:88293967,	88278431	88278568	88278430	88278430	Splice_Site	C	A	.
PRAD	TCGA-EJ-5521-01	AKR1C2	ENST00000604428.1	chr10	5045943:5046206:5049598:5049698:5060091:5060126,5048186:5048244:5049598:5049698:5052535:5052845,	5049599	5049698	5049598	5049598	Splice_Site	C	G	.
PRAD	TCGA-CH-5764-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000371730.2	chr1	51821980:51822518:51826842:51827027:51829537:51829700,	51826843	51827027	51826841	51826841	Splice_Site	A	G	.
PRAD	TCGA-EJ-5526-01	BANP	ENST00000497491.1,ENST00000393207.1,ENST00000393208.2,ENST00000479780.2,ENST00000355163.5,ENST00000538234.1,ENST00000355022.4,ENST00000286122.7	chr16	88052033:88052273:88061088:88061256:88066714:88066825,	88061089	88061256	88061088	88061088	Splice_Site	G	C	.
PRAD	TCGA-FC-A5OB-01	PTPN12	ENST00000418110.1,ENST00000248594.6,ENST00000447995.2,ENST00000435495.2,ENST00000415482.2,ENST00000494248.1	chr7	77214862:77214898:77221501:77221573:77227158:77227218,	77221502	77221573	77221501	77221502	Splice_Site	-	A	.
PRAD	TCGA-HC-7738-01	HGD	ENST00000475447.2	chr3	120363165:120363290:120365113:120365213:120365819:120365891,120363444:120363466:120365113:120365213:120365819:120365891,	120365114	120365213	120365112	120365112	Splice_Site	A	G	.
PRAD	TCGA-J9-A52B-01	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
PRAD	TCGA-EJ-7331-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41860456:41860560:41861075:41861220:41862224:41862354,	41861076	41861220	41861222	41861222	Splice_Site	T	C	.
PRAD	TCGA-HC-7230-01	SCN3B	ENST00000392770.2,ENST00000528267.1,ENST00000299333.3,ENST00000530277.1,ENST00000527836.1	chr11	123513317:123513379:123516294:123516458:123524454:123524534,	123516295	123516458	123516294	123516294	Splice_Site	C	T	.
PRAD	TCGA-HC-A4ZV-01	CCDC9	ENST00000221922.6,ENST00000600117.1	chr19	47769867:47770049:47773663:47773710:47773809:47773844,	47773664	47773710	47773663	47773663	Splice_Site	G	A	.
PRAD	TCGA-J4-A67O-01	CDC27	ENST00000573550.1	chr17	45232120:45232152:45234278:45234349:45234595:45234633,	45234279	45234349	45234278	45234278	Splice_Site	C	A	.
PRAD	TCGA-J4-A67O-01	CDC27	ENST00000570818.1,ENST00000066544.3,ENST00000526866.1,ENST00000527547.1,ENST00000533415.1,ENST00000525495.2,ENST00000446365.2,ENST00000531206.1	chr17	45232120:45232152:45234278:45234490:45234595:45234633,	45234279	45234490	45234278	45234278	Splice_Site	C	A	.
PRAD	TCGA-KK-A5A1-01	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119912141:119912271:119962486:119962623:119962849:119962963,	119962487	119962623	119962486	119962486	Splice_Site	C	T	.
PRAD	TCGA-KK-A5A1-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899929	163899929	Splice_Site	G	T	.
PRAD	TCGA-CH-5791-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690802	89690802	Splice_Site	G	A	.
PRAD	TCGA-KK-A59X-01	RUVBL2	ENST00000413176.2,ENST00000595090.1,ENST00000596247.1,ENST00000594338.1,ENST00000221413.6	chr19	49514448:49514567:49517740:49517860:49518277:49518407,	49517741	49517860	49517861	49517861	Splice_Site	G	T	.
PRAD	TCGA-CH-5752-01	TBL1XR1	ENST00000457928.2,ENST00000430069.1	chr3	176751985:176752113:176755885:176755960:176756100:176756222,	176755886	176755960	176755961	176755961	Splice_Site	C	G	.
PRAD	TCGA-EJ-5526-01	PLEKHA2	ENST00000388745.4,ENST00000521746.1,ENST00000420274.1,ENST00000519640.1	chr8	38775424:38775588:38793511:38793568:38808367:38808508,38775424:38775588:38793511:38793568:38801306:38801355,	38793512	38793568	38793568	38793569	Splice_Site	GG	-	p.66_splice
PRAD	TCGA-HC-7747-01	NAP1L1	ENST00000547969.1,ENST00000535020.2,ENST00000547529.2,ENST00000552342.1,ENST00000547773.1,ENST00000431879.3,ENST00000393263.3,ENST00000544816.1,ENST00000547993.1,ENST00000552147.1,ENST00000549596.1,ENST00000548044.1,ENST00000542344.1,ENST00000261182.8,ENST00000552056.1	chr12	76443535:76443565:76444310:76444433:76446870:76446890,	76444311	76444433	76444310	76444312	Splice_Site	CAT	-	p.D354_splice
PRAD	TCGA-EJ-5526-01	PLEKHA2	ENST00000388745.4,ENST00000521746.1,ENST00000420274.1,ENST00000519640.1	chr8	38775424:38775588:38793511:38793568:38808367:38808508,38775424:38775588:38793511:38793568:38801306:38801355,	38793512	38793568	38793568	38793569	Splice_Site	GG	-	p.K66fs
READ	TCGA-F5-6814-01	ABCA6	ENST00000284425.2,ENST00000446604.2	chr17	67084307:67084399:67085605:67085683:67087283:67087403,	67085606	67085683	67085605	67085605	Splice_Site	C	A	.
READ	TCGA-F5-6864-01	ACSM1	ENST00000519745.1	chr16	20673115:20673195:20681148:20681312:20682852:20682993,	20681149	20681312	20681148	20681148	Splice_Site	C	T	.
READ	TCGA-F5-6864-01	ACSM1	ENST00000219151.4,ENST00000519031.1,ENST00000307493.4,ENST00000520010.1	chr16	20673115:20673195:20681148:20681308:20682852:20682993,	20681149	20681308	20681148	20681148	Splice_Site	C	T	.
READ	TCGA-G5-6233-01	AGXT2	ENST00000231420.6,ENST00000510428.1	chr5	35037046:35037170:35039428:35039613:35047909:35047995,35037046:35037170:35039428:35039613:35040679:35040765,	35039429	35039613	35039428	35039428	Splice_Site	C	T	.
READ	TCGA-DY-A1DG-01	ALOX12B	ENST00000319144.4	chr17	7976974:7977075:7978912:7979034:7979492:7979662,	7978913	7979034	7978912	7978912	Splice_Site	C	A	.
READ	TCGA-EI-6917-01	ARMC8	ENST00000489213.1,ENST00000393058.3,ENST00000486832.1,ENST00000470821.1,ENST00000469044.1,ENST00000481646.1,ENST00000491704.1,ENST00000460495.1,ENST00000471453.1,ENST00000485396.1,ENST00000538260.1,ENST00000463485.1,ENST00000358441.2	chr3	137958310:137958370:137960624:137960825:137963929:137964025,	137960625	137960825	137960826	137960826	Splice_Site	G	A	.
READ	TCGA-EI-6884-01	ASIC2	ENST00000359872.6,ENST00000225823.2	chr17	31342988:31343057:31344622:31344702:31348236:31348328,	31344623	31344702	31344621	31344621	Splice_Site	A	T	.
READ	TCGA-EI-6917-01	ATF7IP	ENST00000544627.1,ENST00000540793.1,ENST00000543189.1,ENST00000537653.1,ENST00000536444.1,ENST00000261168.4	chr12	14609494:14609568:14610140:14610229:14613428:14613501,	14610141	14610229	14610231	14610231	Splice_Site	T	C	.
READ	TCGA-EI-6917-01	ATL1	ENST00000555960.1,ENST00000357032.3,ENST00000354525.4,ENST00000358385.6,ENST00000441560.2	chr14	51026848:51027017:51054548:51054796:51057658:51057675,	51054549	51054796	51054798	51054798	Splice_Site	T	C	.
READ	TCGA-G5-6641-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108175401:108175579:108178623:108178711:108180886:108181042,	108178624	108178711	108178712	108178712	Splice_Site	G	T	.
READ	TCGA-EI-6882-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32818981:32819127:32820100:32820211:32822817:32823035,	32820101	32820211	32820100	32820101	Splice_Site	-	A	.
READ	TCGA-F5-6814-01	BMPR1A	ENST00000372037.3	chr10	88603162:88603267:88635623:88635842:88649818:88649874,88598695:88598736:88635623:88635842:88649818:88649874,	88635624	88635842	88635844	88635844	Splice_Site	T	C	.
READ	TCGA-EI-6917-01	BRCC3	ENST00000369459.2,ENST00000330045.7,ENST00000369462.1	chrX	154299792:154299925:154300601:154300618:154301651:154301706,	154300602	154300618	154300620	154300620	Splice_Site	T	C	.
READ	TCGA-DY-A1DG-01	CADPS	ENST00000283269.9	chr3	62484836:62484943:62499312:62499381:62501733:62501857,	62499313	62499381	62499312	62499312	Splice_Site	C	T	.
READ	TCGA-F5-6814-01	CCDC7	ENST00000277657.6,ENST00000362006.5	chr10	32762894:32762951:32780849:32780925:32806872:32806903,	32780850	32780925	32780849	32780849	Splice_Site	G	T	.
READ	TCGA-DY-A1DC-01	CCM2	ENST00000482714.1,ENST00000472223.1,ENST00000475551.1,ENST00000488727.1,ENST00000381112.3,ENST00000258781.6,ENST00000541586.1,ENST00000461377.1	chr7	45077859:45078025:45108041:45108178:45109424:45109560,45104201:45104245:45108041:45108178:45109424:45109560,	45108042	45108178	45108041	45108041	Splice_Site	G	A	.
READ	TCGA-EI-6917-01	CD2AP	ENST00000359314.5,ENST00000479857.1	chr6	47547129:47547225:47548599:47548636:47549738:47549801,	47548600	47548636	47548599	47548599	Splice_Site	G	T	.
READ	TCGA-AG-3725-01	CES1	ENST00000422046.2,ENST00000569260.1,ENST00000360526.3,ENST00000361503.4	chr16	55846814:55846955:55850835:55850874:55853446:55853492,	55850836	55850874	55850875	55850875	Splice_Site	C	A	.
READ	TCGA-AG-3592-01	COL4A5	ENST00000483338.1,ENST00000328300.6,ENST00000361603.2	chrX	107846193:107846291:107849971:107850122:107858140:107858254,	107849972	107850122	107849971	107849971	Splice_Site	G	T	.
READ	TCGA-EI-6882-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47537787:47537850:47538527:47538590:47538943:47539033,	47538528	47538590	47538527	47538527	Splice_Site	G	-	.
READ	TCGA-EI-6507-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47539701:47539764:47540428:47540491:47540974:47541037,	47540429	47540491	47540428	47540428	Splice_Site	G	-	.
READ	TCGA-CI-6620-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789726	3789726	Splice_Site	C	T	.
READ	TCGA-F5-6814-01	CYP11B1	ENST00000519285.1,ENST00000377675.3,ENST00000292427.4	chr8	143955884:143955902:143956372:143956570:143956649:143956728,	143956373	143956570	143956571	143956571	Splice_Site	C	A	.
READ	TCGA-EI-6917-01	DCLK2	ENST00000411937.2,ENST00000506325.1,ENST00000302176.8,ENST00000296550.7	chr4	151023629:151023964:151114289:151114392:151119153:151119255,	151114290	151114392	151114393	151114393	Splice_Site	G	C	.
READ	TCGA-F5-6814-01	DHX36	ENST00000481941.1,ENST00000496811.1,ENST00000544526.1,ENST00000329463.5,ENST00000481332.1,ENST00000308361.6	chr3	154002602:154002776:154006654:154006753:154007497:154007615,	154006655	154006753	154006755	154006755	Splice_Site	T	C	.
READ	TCGA-EI-6917-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118507472:118507664:118510955:118511032:118513051:118513179,	118510956	118511032	118511034	118511034	Splice_Site	T	C	.
READ	TCGA-DC-6682-01	DNAJC21	ENST00000342382.4,ENST00000382021.2	chr5	34941200:34941288:34944971:34945130:34945826:34945908,34941200:34941288:34944971:34945130:34945865:34945908,	34944972	34945130	34945131	34945131	Splice_Site	G	A	.
READ	TCGA-AG-3592-01	DNMT3B	ENST00000348286.2,ENST00000328111.2,ENST00000353855.2,ENST00000201963.3,ENST00000344505.4	chr20	31369158:31369220:31372563:31372665:31375035:31375257,31369158:31369220:31372563:31372665:31374307:31374433,	31372564	31372665	31372666	31372666	Splice_Site	G	C	.
READ	TCGA-DC-6683-01	DNPEP	ENST00000373966.1,ENST00000273075.4,ENST00000434339.1,ENST00000373972.1,ENST00000429013.1,ENST00000460963.1,ENST00000523282.1,ENST00000457935.1,ENST00000373963.1	chr2	220249087:220249165:220250689:220250820:220251007:220251133,220250380:220250428:220250689:220250820:220251007:220251133,	220250690	220250820	220250689	220250689	Splice_Site	C	T	.
READ	TCGA-F5-6814-01	DPP8	ENST00000300141.6,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6	chr15	65772559:65772737:65773852:65773953:65777436:65777498,	65773853	65773953	65773954	65773954	Splice_Site	C	A	.
READ	TCGA-G5-6233-01	ECHDC1	ENST00000368292.6,ENST00000368287.1,ENST00000309620.9,ENST00000368291.2,ENST00000479525.2	chr6	127648155:127648289:127651953:127652175:127664105:127664491,127648155:127648289:127651953:127652175:127663500:127663552,127648155:127648289:127651953:127652175:127664480:127664493,	127651954	127652175	127652176	127652176	Splice_Site	C	T	.
READ	TCGA-EI-6917-01	EGFL6	ENST00000361306.1,ENST00000380602.3	chrX	13624497:13624632:13626442:13626565:13635848:13636172,	13626443	13626565	13626442	13626442	Splice_Site	G	T	.
READ	TCGA-F5-6814-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000443427.1,ENST00000338799.5,ENST00000456483.2	chr6	152129239:152129499:152163731:152163922:152201789:152201903,	152163732	152163922	152163731	152163731	Splice_Site	G	T	.
READ	TCGA-F5-6814-01	FAM13C	ENST00000422313.2,ENST00000442566.3,ENST00000513059.1,ENST00000468840.2,ENST00000277705.6,ENST00000373868.2,ENST00000435852.2,ENST00000373867.3	chr10	61014107:61014203:61022193:61022405:61023844:61023926,	61022194	61022405	61022406	61022406	Splice_Site	C	A	.
READ	TCGA-EI-6917-01	FAM208A	ENST00000431842.2,ENST00000355628.5,ENST00000493960.2	chr3	56661676:56661769:56662519:56662642:56667071:56667871,	56662520	56662642	56662518	56662518	Splice_Site	A	G	.
READ	TCGA-F5-6814-01	FAM3C	ENST00000359943.3,ENST00000412653.1	chr7	121012163:121012193:121018963:121019068:121023010:121023064,	121018964	121019068	121019069	121019069	Splice_Site	C	A	.
READ	TCGA-EI-6917-01	GABRA5	ENST00000355395.5	chr15	27112218:27112258:27114321:27114481:27125992:27126114,	27114322	27114481	27114483	27114483	Splice_Site	T	C	.
READ	TCGA-EI-6506-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622043	24622043	Splice_Site	C	T	.
READ	TCGA-F5-6814-01	GP2	ENST00000573897.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20329723:20329752:20330941:20331090:20331583:20331652,	20330942	20331090	20331091	20331091	Splice_Site	C	A	.
READ	TCGA-AG-3725-01	HACL1	ENST00000456194.2,ENST00000435217.2,ENST00000422591.1,ENST00000383779.4,ENST00000321169.5,ENST00000451445.2	chr3	15609938:15610093:15613174:15613276:15614665:15614749,	15613175	15613276	15613278	15613278	Splice_Site	T	-	.
READ	TCGA-F5-6814-01	HAUS1	ENST00000588704.1,ENST00000585518.1,ENST00000282058.6,ENST00000593165.1,ENST00000589554.1,ENST00000591715.1,ENST00000586060.1	chr18	43704787:43704859:43705709:43705757:43708040:43708087,	43705710	43705757	43705709	43705709	Splice_Site	G	T	.
READ	TCGA-EI-6514-01	HDAC3	ENST00000519474.1,ENST00000523088.1,ENST00000305264.3,ENST00000469550.2	chr5	141008171:141008206:141008739:141008873:141009250:141009306,	141008740	141008873	141008874	141008874	Splice_Site	C	A	.
READ	TCGA-F5-6814-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679563	21679563	Splice_Site	A	G	.
READ	TCGA-F5-6814-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679563	21679563	Splice_Site	A	G	.
READ	TCGA-AF-4110-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000514350.1,ENST00000505766.1	chr5	75858220:75858377:75866404:75866482:75871517:75871594,	75866405	75866482	75866404	75866404	Splice_Site	G	C	.
READ	TCGA-EI-6917-01	KCNC2	ENST00000548513.1,ENST00000298972.1	chr12	75433896:75434986:75436059:75436154:75444169:75444707,75433896:75434986:75436059:75436154:75441932:75442097,	75436060	75436154	75436155	75436155	Splice_Site	C	T	.
READ	TCGA-CL-5917-01	KIF21A	ENST00000551264.1	chr12	39705218:39705355:39713707:39713815:39716469:39716684,	39713708	39713815	39713817	39713817	Splice_Site	T	C	.
READ	TCGA-CI-6622-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000432347.2,ENST00000354456.3,ENST00000394288.3,ENST00000427266.1,ENST00000512292.1,ENST00000507377.1	chr4	129012155:129012299:129012501:129012667:129019340:129019485,	129012502	129012667	129012668	129012668	Splice_Site	G	A	.
READ	TCGA-F5-6814-01	LEPR	ENST00000344610.8,ENST00000406510.3,ENST00000462765.1,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66031228:66031288:66036155:66036485:66038008:66038132,	66036156	66036485	66036155	66036155	Splice_Site	G	T	.
READ	TCGA-EI-6882-01	LPIN1	ENST00000256720.2,ENST00000396097.1,ENST00000425416.2,ENST00000449576.2,ENST00000396099.1	chr2	11928512:11928582:11932039:11932132:11935533:11935613,	11932040	11932132	11932039	11932039	Splice_Site	G	T	.
READ	TCGA-F5-6814-01	MBNL1	ENST00000485910.1,ENST00000465907.2,ENST00000282488.7,ENST00000545754.1	chr3	152017986:152018156:152132729:152132900:152150505:152150706,151986751:151986881:152132729:152132900:152150505:152150706,152017986:152018156:152132729:152132900:152163070:152163263,	152132730	152132900	152132901	152132901	Splice_Site	G	T	.
READ	TCGA-EI-6882-01	MCMBP	ENST00000360003.3,ENST00000466047.1,ENST00000369077.3	chr10	121595051:121595216:121596407:121596541:121598046:121598212,	121596408	121596541	121596542	121596542	Splice_Site	C	A	.
READ	TCGA-EI-6507-01	MEMO1	ENST00000490459.1,ENST00000413686.1,ENST00000295065.5,ENST00000404530.1,ENST00000379383.3	chr2	32145866:32145979:32157135:32157204:32168370:32168452,	32157136	32157204	32157135	32157135	Splice_Site	C	T	.
READ	TCGA-EI-6882-01	MFF	ENST00000490857.1,ENST00000304593.9,ENST00000392059.1,ENST00000353339.3	chr2	228205007:228205096:228217229:228217289:228220392:228220477,228212058:228212100:228217229:228217289:228220392:228220477,	228217230	228217289	228217228	228217228	Splice_Site	A	C	.
READ	TCGA-EI-6884-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000456676.2,ENST00000536378.1,ENST00000441265.1,ENST00000231790.2,ENST00000455445.2	chr3	37055922:37056035:37058996:37059090:37067127:37067498,37055922:37056035:37058996:37059090:37061800:37061954,	37058997	37059090	37058995	37058995	Splice_Site	A	G	.
READ	TCGA-EI-6507-01	MRPL13	ENST00000306185.3,ENST00000518918.1	chr8	121437545:121437606:121444269:121444363:121455424:121455511,	121444270	121444363	121444364	121444364	Splice_Site	C	G	.
READ	TCGA-EI-6512-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2,ENST00000360084.5	chr13	77847606:77847803:77852892:77853046:77862295:77862511,	77852893	77853046	77852892	77852892	Splice_Site	C	T	.
READ	TCGA-BM-6198-01	MYO1G	ENST00000258787.7,ENST00000464434.1,ENST00000480503.1,ENST00000483585.1	chr7	45016162:45016256:45016461:45016670:45018465:45018599,	45016462	45016670	45016461	45016461	Splice_Site	C	T	.
READ	TCGA-F5-6814-01	NAE1	ENST00000569388.1	chr16	66857183:66857209:66857431:66857503:66858757:66858788,66857183:66857209:66857431:66857503:66860425:66860486,	66857432	66857503	66857504	66857504	Splice_Site	C	A	.
READ	TCGA-F5-6814-01	NLGN4Y	ENST00000339174.5,ENST00000355905.2,ENST00000382872.1	chrY	16834996:16835149:16936067:16936253:16941609:16942399,	16936068	16936253	16936066	16936066	Splice_Site	A	T	.
READ	TCGA-F5-6814-01	NOB1	ENST00000268802.5,ENST00000564620.1	chr16	69778805:69778920:69782134:69782232:69782820:69783021,	69782135	69782232	69782134	69782134	Splice_Site	C	A	.
READ	TCGA-G5-6572-01	OXA1L	ENST00000481218.1,ENST00000285848.5,ENST00000604262.1,ENST00000431881.2,ENST00000442110.1,ENST00000412791.1,ENST00000358043.5	chr14	23236526:23236618:23237166:23237380:23238999:23239143,	23237167	23237380	23237166	23237166	Splice_Site	G	C	.
READ	TCGA-EI-6917-01	PDLIM5	ENST00000380176.3,ENST00000437932.1,ENST00000503974.1,ENST00000317968.4,ENST00000542407.1,ENST00000506632.1	chr4	95507558:95507595:95539154:95539342:95561426:95561601,	95539155	95539342	95539344	95539344	Splice_Site	T	C	.
READ	TCGA-F5-6814-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000475273.2,ENST00000356327.5,ENST00000440204.1,ENST00000342215.6,ENST00000498278.1	chr3	171443807:171443866:171451233:171451299:171452654:171452760,	171451234	171451299	171451300	171451300	Splice_Site	C	A	.
READ	TCGA-F5-6814-01	PRKG1	ENST00000373980.4,ENST00000373975.2,ENST00000401604.2,ENST00000373985.1	chr10	54048485:54048608:54048690:54048753:54049983:54050050,	54048691	54048753	54048755	54048755	Splice_Site	T	C	.
READ	TCGA-AG-4021-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711874	89711874	Splice_Site	G	A	.
READ	TCGA-F5-6814-01	QDPR	ENST00000281243.5,ENST00000428702.2	chr4	17492289:17492368:17493854:17493963:17503341:17503482,	17493855	17493963	17493854	17493854	Splice_Site	C	T	.
READ	TCGA-F5-6814-01	RASGEF1B	ENST00000264400.2,ENST00000335927.7,ENST00000509081.1	chr4	82353452:82353525:82354993:82355117:82355792:82355888,	82354994	82355117	82355118	82355118	Splice_Site	C	A	.
READ	TCGA-EI-6885-01	RIN2	ENST00000255006.6,ENST00000440354.2,ENST00000484638.1	chr20	19972811:19972943:19977322:19977486:19981256:19981992,	19977323	19977486	19977487	19977487	Splice_Site	G	T	.
READ	TCGA-EI-6883-01	SAFB	ENST00000454510.1,ENST00000588852.1,ENST00000433404.1,ENST00000292123.5	chr19	5654378:5654467:5657251:5657358:5661531:5661819,5654378:5654467:5657251:5657358:5661528:5661819,	5657252	5657358	5657359	5657359	Splice_Site	G	T	.
READ	TCGA-F5-6814-01	SCN1A	ENST00000423058.2,ENST00000303395.4,ENST00000375405.3,ENST00000409050.1	chr2	166895932:166896106:166897740:166897979:166898801:166898934,	166897741	166897979	166897980	166897980	Splice_Site	C	A	.
READ	TCGA-AG-3732-01	SCYL1	ENST00000533862.1	chr11	65304507:65304599:65305279:65305351:65305474:65305653,	65305280	65305351	65305279	65305280	Splice_Site	-	CAGGAGGCCGAGTCTGTGCTGGCC	.
READ	TCGA-EF-5830-01	SLC12A7	ENST00000264930.5	chr5	1076808:1076927:1077947:1078122:1078815:1078873,	1077948	1078122	1078124	1078125	Splice_Site	-	GCAG	.
READ	TCGA-F5-6814-01	SLC13A1	ENST00000427975.1,ENST00000194130.2	chr7	122774463:122774583:122787212:122787364:122808427:122808476,	122787213	122787364	122787365	122787365	Splice_Site	C	A	.
READ	TCGA-F5-6814-01	ST14	ENST00000278742.5	chr11	130068841:130068964:130069845:130070032:130078304:130078579,	130069846	130070032	130069845	130069845	Splice_Site	G	A	.
READ	TCGA-EI-6507-01	TBC1D5	ENST00000429383.4,ENST00000446818.2,ENST00000253692.7,ENST00000429924.2	chr3	17279654:17279911:17299997:17300083:17333386:17333493,	17299998	17300083	17300085	17300086	Splice_Site	-	A	.
READ	TCGA-F5-6814-01	TBX15	ENST00000369429.3	chr1	119469132:119469234:119474241:119474455:119530213:119530428,	119474242	119474455	119474241	119474241	Splice_Site	C	T	.
READ	TCGA-DC-6157-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579591	7579591	Splice_Site	C	G	.
READ	TCGA-AF-2693-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579591	7579591	Splice_Site	C	T	.
READ	TCGA-AG-3731-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579591	7579591	Splice_Site	C	T	.
READ	TCGA-F5-6814-01	TPTE2	ENST00000382978.1,ENST00000400103.2,ENST00000255310.6,ENST00000457266.2,ENST00000382977.4,ENST00000400230.2,ENST00000390680.2,ENST00000382975.4	chr13	19999086:19999157:20000564:20000657:20004607:20004687,	20000565	20000657	20000658	20000658	Splice_Site	C	A	.
READ	TCGA-EI-6917-01	TTC39C	ENST00000317571.3,ENST00000578150.1	chr18	21594876:21595002:21644103:21644152:21645975:21646104,	21644104	21644152	21644103	21644103	Splice_Site	G	T	.
READ	TCGA-F5-6813-01	UGT2B28	ENST00000335568.5	chr4	70155382:70155470:70156309:70156529:70160247:70160768,	70156310	70156529	70156530	70156530	Splice_Site	G	A	.
READ	TCGA-EI-6917-01	UNC5C	ENST00000513796.1,ENST00000453304.1	chr4	96127778:96127947:96137274:96137362:96140119:96140464,	96137275	96137362	96137273	96137273	Splice_Site	A	G	.
READ	TCGA-EI-6510-01	USP34	ENST00000453133.1,ENST00000398571.2	chr2	61577394:61577524:61577702:61577828:61597455:61597548,	61577703	61577828	61577702	61577702	Splice_Site	C	T	.
READ	TCGA-AH-6897-01	WDR78	ENST00000431318.1,ENST00000371022.3,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67356836:67356949:67358911:67359096:67370883:67370986,	67358912	67359096	67358911	67358911	Splice_Site	C	T	.
READ	TCGA-AF-2693-01	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24197299:24197887:24225442:24225592:24225828:24225972,	24225443	24225592	24225594	24225594	Splice_Site	T	G	.
READ	TCGA-EI-6917-01	ZNF43	ENST00000354959.4	chr19	22000719:22000788:22001896:22002023:22025946:22026128,22000719:22000788:22001896:22002023:22018837:22018989,	22001897	22002023	22001895	22001895	Splice_Site	A	G	.
READ	TCGA-AG-3592-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62598228:62598357:62598733:62598876:62599182:62599305,	62598734	62598876	62598733	62598733	Splice_Site	C	G	.
READ	TCGA-AG-3583-01	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12947760:12947979:12948826:12948941:12950120:12950334,	12948827	12948941	12948826	12948826	Splice_Site	C	T	.
READ	TCGA-AG-3612-01	HTN3	ENST00000533547.1,ENST00000529625.1,ENST00000530128.1,ENST00000381057.3	chr4	70894175:70894233:70896444:70896508:70897695:70897716,	70896445	70896508	70896510	70896510	Splice_Site	T	A	.
READ	TCGA-AG-3587-01	TIMM44	ENST00000597926.1,ENST00000598675.1,ENST00000595876.1,ENST00000270538.3,ENST00000595831.1	chr19	7997724:7997817:7998369:7998455:7998748:7998837,	7998370	7998455	7998369	7998369	Splice_Site	C	T	.
READ	TCGA-AG-A00C-01	TMEM167A	ENST00000504622.1	chr5	82352702:82352973:82357695:82357730:82360826:82360936,82352702:82352973:82357695:82357730:82373139:82373186,	82357696	82357730	82357695	82357695	Splice_Site	C	A	.
READ	TCGA-AG-A002-01	ZNF706	ENST00000520984.1	chr8	102211422:102211467:102212217:102212325:102213834:102213885,102190224:102190615:102212217:102212325:102213834:102213885,	102212218	102212325	102212326	102212326	Splice_Site	C	A	.
SARC	TCGA-HB-A3L4-01	SRF	ENST00000265354.4,ENST00000457278.2	chr6	43141584:43141851:43143443:43143705:43144285:43144405,	43143444	43143705	43143443	43143450	Splice_Site	GGACACAC	-	p.KDTL260_splice
SARC	TCGA-DX-AB3B-01	PMS1	ENST00000441310.2,ENST00000421722.1,ENST00000409985.1,ENST00000450931.1,ENST00000424766.1,ENST00000374826.4,ENST00000409823.3,ENST00000447232.2,ENST00000424059.1	chr2	190656535:190656667:190660494:190660677:190670377:190670480,	190660495	190660677	190660493	190660495	Splice_Site	AGG	-	p.L44_splice
SARC	TCGA-PC-A5DK-01	ANXA6	ENST00000523714.1,ENST00000377751.5,ENST00000521512.1,ENST00000356496.5,ENST00000354546.5	chr5	150484805:150484864:150488015:150488111:150489313:150489400,	150488016	150488111	150488015	150488015	Splice_Site	C	T	e22+1
SARC	TCGA-DX-AB2E-01	ARMC4	ENST00000537576.1,ENST00000305242.5,ENST00000545014.1	chr10	28229491:28229734:28233150:28233360:28233744:28233891,	28233151	28233360	28233361	28233361	Splice_Site	C	T	e11-1
SARC	TCGA-VT-A80J-01	ATAD3C	ENST00000378785.2	chr1	1387425:1387502:1387744:1387814:1389724:1389880,	1387745	1387814	1387815	1387815	Splice_Site	G	A	e3+1
SARC	TCGA-X6-A8C7-01	ATG16L1	ENST00000392020.4,ENST00000474148.1,ENST00000479942.1,ENST00000392021.3,ENST00000392018.1,ENST00000392017.4	chr2	234172641:234172711:234173537:234173789:234178647:234178713,	234173538	234173789	234173536	234173536	Splice_Site	A	G	e5-2
SARC	TCGA-DX-AB37-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1,ENST00000400866.2	chrX	76872080:76872198:76874273:76874449:76875862:76876000,	76874274	76874449	76874272	76874272	Splice_Site	A	T	e21+2
SARC	TCGA-3B-A9HL-01	CADM4	ENST00000222374.2	chr19	44129229:44129402:44130062:44130153:44130275:44130440,	44130063	44130153	44130154	44130154	Splice_Site	C	G	e6-1
SARC	TCGA-DX-A8BJ-01	CADPS	ENST00000283269.9	chr3	62484836:62484943:62499312:62499381:62501733:62501857,	62499313	62499381	62499312	62499312	Splice_Site	C	T	e17+1
SARC	TCGA-DX-A3UD-01	CAMTA1	ENST00000467404.2	chr1	6845611:6845635:6885151:6885270:6931816:6931900,6867047:6867148:6885151:6885270:6931816:6931900,	6885152	6885270	6885151	6885151	Splice_Site	G	A	e3-1
SARC	TCGA-QC-A6FX-01	CDH12	ENST00000504376.2,ENST00000382254.1,ENST00000517378.1	chr5	21842269:21842437:21854779:21854899:21975199:21975494,	21854780	21854899	21854900	21854900	Splice_Site	C	A	e3-1
SARC	TCGA-DX-A7EN-01	CENPH	ENST00000514753.1,ENST00000283006.2,ENST00000515001.1,ENST00000513575.1	chr5	68487621:68487677:68490473:68490522:68491543:68491577,	68490474	68490522	68490472	68490472	Splice_Site	A	C	e3-2
SARC	TCGA-MO-A47R-01	CIITA	ENST00000324288.8,ENST00000570546.1,ENST00000381835.5	chr16	11016023:11016107:11016263:11016347:11017084:11017182,	11016264	11016347	11016348	11016348	Splice_Site	G	A	e18+1
SARC	TCGA-DX-AB2E-01	CLN3	ENST00000565778.1,ENST00000357806.7,ENST00000565316.1,ENST00000355477.5,ENST00000565140.1,ENST00000359984.7,ENST00000567963.1,ENST00000569430.1,ENST00000567804.1,ENST00000357076.5,ENST00000563874.1,ENST00000360019.2,ENST00000333496.9,ENST00000567495.1,ENST00000568452.1,ENST00000568076.1,ENST00000566824.1,ENST00000354630.5,ENST00000569030.1,ENST00000568497.1	chr16	28500610:28500707:28502802:28502881:28503034:28503080,	28502803	28502881	28502882	28502882	Splice_Site	C	T	e2-1
SARC	TCGA-WK-A8XX-01	COL23A1	ENST00000390654.3	chr5	177681974:177682027:177683353:177683398:177683866:177683929,	177683354	177683398	177683352	177683352	Splice_Site	A	T	e15+2
SARC	TCGA-X6-A8C3-01	COL4A3BP	ENST00000261415.7	chr5	74685416:74685512:74696029:74696122:74698796:74698883,	74696030	74696122	74696029	74696029	Splice_Site	C	A	e11+1
SARC	TCGA-LI-A9QH-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153907235:153907440:153908535:153908664:153909017:153909118,	153908536	153908664	153908534	153908534	Splice_Site	A	G	e16+2
SARC	TCGA-3B-A9HQ-01	DNAH7	ENST00000312428.6	chr2	196836965:196837190:196849355:196849434:196851789:196851917,	196849356	196849434	196849355	196849355	Splice_Site	C	A	e15+1
SARC	TCGA-DX-AB2E-01	DPYD	ENST00000370192.3	chr1	97543298:97544702:97547885:97548026:97564044:97564188,	97547886	97548026	97548028	97548028	Splice_Site	T	A	e22-2
SARC	TCGA-DX-AB32-01	DSCC1	ENST00000313655.4	chr8	120859241:120859320:120862621:120862756:120865286:120865455,	120862622	120862756	120862621	120862621	Splice_Site	C	T	e3+1
SARC	TCGA-HB-A3L4-01	ELAC2	ENST00000484122.1,ENST00000426905.3,ENST00000581499.2,ENST00000609101.1,ENST00000609345.1,ENST00000609757.1,ENST00000395962.2,ENST00000580504.1,ENST00000583371.1,ENST00000338034.4	chr17	12916523:12916592:12917755:12917813:12919084:12919149,	12917756	12917813	12917814	12917814	Splice_Site	C	G	e5-1
SARC	TCGA-DX-A1L0-01	F11R	ENST00000472573.1,ENST00000335772.3,ENST00000368026.6	chr1	160969935:160970138:160970420:160970567:160970809:160970917,	160970421	160970567	160970420	160970420	Splice_Site	C	A	e4+1
SARC	TCGA-DX-AB2E-01	F11R	ENST00000472573.1,ENST00000335772.3,ENST00000368026.6	chr1	160969935:160970138:160970420:160970567:160970809:160970917,	160970421	160970567	160970569	160970569	Splice_Site	T	A	e4-2
SARC	TCGA-HB-A43Z-01	FAF2	ENST00000261942.6	chr5	175915951:175916028:175919194:175919333:175920999:175921085,	175919195	175919333	175919335	175919335	Splice_Site	T	A	e5+2
SARC	TCGA-DX-AB2W-01	FANCC	ENST00000289081.3,ENST00000375305.1	chr9	97861336:97864132:97869347:97869551:97873744:97873919,	97869348	97869551	97869347	97869347	Splice_Site	C	A	e13+1
SARC	TCGA-QQ-A5VD-01	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000487047.1,ENST00000431076.1	chr2	155158091:155158102:155252502:155252642:155265495:155265555,	155252503	155252642	155252643	155252643	Splice_Site	G	A	e8+1
SARC	TCGA-DX-A48R-01	KCNH5	ENST00000322893.7,ENST00000394968.1	chr14	63246445:63246642:63269046:63269299:63316370:63316570,	63269047	63269299	63269300	63269300	Splice_Site	C	A	e9-1
SARC	TCGA-DX-AB2E-01	KIF1A	ENST00000320389.7,ENST00000404283.3,ENST00000498729.2	chr2	241727467:241727647:241728652:241728729:241737063:241737169,	241728653	241728729	241728730	241728730	Splice_Site	C	G	e2-1
SARC	TCGA-3B-A9HL-01	LGR5	ENST00000536515.1,ENST00000266674.5,ENST00000550851.1	chr12	71953365:71953434:71955560:71955632:71960183:71960255,	71955561	71955632	71955560	71955560	Splice_Site	G	C	e8-1
SARC	TCGA-DX-A8BP-01	MAP4K1	ENST00000592225.1,ENST00000589130.1,ENST00000586296.1,ENST00000396857.2,ENST00000591517.1	chr19	39104682:39104725:39104884:39104932:39105029:39105085,	39104885	39104932	39104934	39104934	Splice_Site	T	G	e6-2
SARC	TCGA-Z4-AAPF-01	ME3	ENST00000530520.1,ENST00000359636.2,ENST00000393324.3,ENST00000543262.1,ENST00000524826.1	chr11	86159191:86159297:86160930:86161044:86161342:86161440,	86160931	86161044	86160930	86160930	Splice_Site	C	T	e9+1
SARC	TCGA-DX-A48O-01	MEST	ENST00000416162.2,ENST00000378576.4,ENST00000427521.1	chr7	130139715:130139756:130140302:130140373:130140629:130140731,130139715:130139756:130140302:130140373:130142484:130142561,	130140303	130140373	130140375	130140375	Splice_Site	T	-	e8+2
SARC	TCGA-DX-AB2E-01	MSI2	ENST00000442934.2,ENST00000284073.2,ENST00000579505.1,ENST00000416426.2	chr17	55693330:55693445:55704589:55704664:55729459:55729522,	55704590	55704664	55704589	55704589	Splice_Site	G	A	e10-1
SARC	TCGA-DX-AB2J-01	NAA25	ENST00000551858.1,ENST00000552527.1,ENST00000549711.1,ENST00000261745.4	chr12	112509698:112509868:112512478:112512568:112513481:112513593,	112512479	112512568	112512476	112512477	Splice_Site	-	A	e9+2
SARC	TCGA-DX-A1KY-01	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329269	56329269	Splice_Site	C	T	e1+1
SARC	TCGA-DX-A8BP-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000346562.2,ENST00000357798.5,ENST00000548645.1	chr14	34247671:34247778:34263102:34263250:34266662:34266778,	34263103	34263250	34263252	34263252	Splice_Site	T	C	e10+2
SARC	TCGA-DX-A48N-01	PIK3AP1	ENST00000371110.2,ENST00000371109.3,ENST00000467625.1,ENST00000339364.5	chr10	98362036:98362155:98363735:98363806:98369468:98369624,	98363736	98363806	98363808	98363808	Splice_Site	T	A	e15-2
SARC	TCGA-DX-AB3B-01	PMS1	ENST00000441310.2,ENST00000421722.1,ENST00000409985.1,ENST00000450931.1,ENST00000424766.1,ENST00000374826.4,ENST00000409823.3,ENST00000447232.2,ENST00000424059.1	chr2	190656535:190656667:190660494:190660677:190670377:190670480,	190660495	190660677	190660493	190660495	Splice_Site	AGG	-	e2-1
SARC	TCGA-HS-A5N8-01	PRKG1	ENST00000373975.2	chr10	53822296:53822391:53841356:53841417:53893599:53893665,	53841357	53841417	53841418	53841418	Splice_Site	G	T	e1+1
SARC	TCGA-DX-A8BP-01	PSEN2	ENST00000422240.2,ENST00000366783.3,ENST00000496965.1,ENST00000366782.1,ENST00000495488.1,ENST00000391872.2,ENST00000340188.4	chr1	227069588:227069749:227071405:227071620:227073238:227073269,	227071406	227071620	227071405	227071405	Splice_Site	G	A	e3-1
SARC	TCGA-MO-A47R-01	PSG8	ENST00000404209.4,ENST00000306511.4	chr19	43259139:43259418:43262153:43262432:43268067:43268433,	43262154	43262432	43262153	43262153	Splice_Site	C	T	e3+1
SARC	TCGA-DX-A6YQ-01	PTAFR	ENST00000539896.1	chr1	28476183:28477570:28503102:28503184:28520232:28520384,	28503103	28503184	28503185	28503185	Splice_Site	C	G	e1-1
SARC	TCGA-DX-A7EM-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037972	49037972	Splice_Site	G	A	e21+1
SARC	TCGA-3B-A9HP-01	RRP8	ENST00000534343.1	chr11	6621715:6621812:6621898:6622005:6624633:6624809,	6621899	6622005	6621898	6621898	Splice_Site	C	T	e5+1
SARC	TCGA-DX-AB2J-01	SIGLEC6	ENST00000359982.4	chr19	52022983:52023509:52031413:52031507:52032977:52033235,	52031414	52031507	52031508	52031508	Splice_Site	C	T	e6-1
SARC	TCGA-DX-AB36-01	SLC35A5	ENST00000261034.2	chr3	112299392:112299553:112300025:112300173:112301517:112301577,	112300026	112300173	112300024	112300024	Splice_Site	A	G	e6-2
SARC	TCGA-QQ-A5VD-01	SLFN13	ENST00000530782.1	chr17	33771633:33771720:33772391:33772712:33774286:33774413,	33772392	33772712	33772391	33772391	Splice_Site	C	T	e1+1
SARC	TCGA-X9-A971-01	TNC	ENST00000535648.1,ENST00000341037.4,ENST00000544972.1	chr9	117804497:117804620:117808688:117808961:117835881:117835920,117804497:117804620:117808688:117808961:117815018:117815294,117804497:117804620:117808688:117808961:117810538:117810811,117804497:117804620:117808688:117808961:117819431:117819580,	117808689	117808961	117808688	117808688	Splice_Site	C	G	e16+1
SARC	TCGA-SG-A6Z4-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574034	7574034	Splice_Site	C	G	e9-1
SARC	TCGA-MB-A5Y9-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577010	7577018	Splice_Site	CTTGCTTAC	-	e7+1
SARC	TCGA-DX-AB2V-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	A	e5+1
SARC	TCGA-WK-A8XY-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	A	e5+1
SARC	TCGA-DX-A8BK-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	G	e5-1
SARC	TCGA-DX-A6BA-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	T	e5-1
SARC	TCGA-LI-A9QH-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	T	e3+1
SARC	TCGA-IE-A6BZ-01	TRAPPC6B	ENST00000347691.5,ENST00000554018.1	chr14	39623414:39623498:39627488:39627606:39628653:39628754,39621014:39621043:39627488:39627606:39628653:39628754,39623414:39623498:39627488:39627606:39628686:39628754,39621014:39621043:39627488:39627606:39628686:39628754,	39627489	39627606	39627487	39627487	Splice_Site	A	G	e3+2
SARC	TCGA-DX-AB35-01	WDSUB1	ENST00000358147.4	chr2	160104882:160105023:160112706:160112886:160132056:160132149,	160112707	160112886	160112887	160112887	Splice_Site	C	T	e8-1
SARC	TCGA-K1-A6RV-01	YME1L1	ENST00000376016.3,ENST00000375972.3,ENST00000326799.3	chr10	27400662:27401049:27403449:27403536:27404988:27405062,	27403450	27403536	27403538	27403538	Splice_Site	T	C	e19-2
SARC	TCGA-QC-A7B5-01	ARCN1	ENST00000359415.4	chr11	118443167:118443265:118444334:118444498:118451960:118452116,	118444335	118444498	118444334	118444334	Splice_Site	G	A	e1-1
SARC	TCGA-DX-AATS-01	CHST10	ENST00000264249.3,ENST00000542617.1,ENST00000420858.1,ENST00000418201.1,ENST00000409701.1,ENST00000448989.1,ENST00000409046.1	chr2	101019025:101019117:101023037:101023169:101031502:101031573,	101023038	101023169	101023037	101023037	Splice_Site	C	G	e3+1
SARC	TCGA-DX-A6BK-01	COL18A1	ENST00000359759.4,ENST00000355480.5,ENST00000400337.2	chr21	46907360:46907423:46908331:46908358:46909399:46909435,	46908332	46908358	46908330	46908330	Splice_Site	A	G	e17-2
SARC	TCGA-IW-A3M5-01	CYFIP2	ENST00000347377.6,ENST00000377576.3,ENST00000541131.1,ENST00000522463.1,ENST00000523119.1,ENST00000517753.1,ENST00000523969.1,ENST00000521420.1,ENST00000520759.1,ENST00000435847.2,ENST00000442283.2,ENST00000318218.6,ENST00000519153.1	chr5	156809597:156809670:156810272:156810367:156816196:156816435,	156810273	156810367	156810368	156810368	Splice_Site	G	A	e29+1
SARC	TCGA-RN-AAAQ-01	DCDC1	ENST00000597505.1,ENST00000437348.1,ENST00000342355.4	chr11	31112939:31113058:31115596:31115731:31123723:31123829,	31115597	31115731	31115595	31115595	Splice_Site	A	G	e5+2
SARC	TCGA-DX-A7EM-01	GALC	ENST00000474294.2,ENST00000261304.2,ENST00000554372.1,ENST00000557316.1	chr14	88454487:88454551:88454798:88454867:88459313:88459466,	88454799	88454867	88454869	88454870	Splice_Site	-	A	e2-2
SARC	TCGA-X6-A8C4-01	GALC	ENST00000474294.2,ENST00000261304.2,ENST00000554372.1,ENST00000557316.1	chr14	88454487:88454551:88454798:88454867:88459313:88459466,	88454799	88454867	88454869	88454870	Splice_Site	-	A	e2-2
SARC	TCGA-QC-AA9N-01	GALNT14	ENST00000481023.1,ENST00000486564.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31165066:31165170:31167723:31167808:31168648:31168736,	31167724	31167808	31167809	31167809	Splice_Site	C	T	e8-1
SARC	TCGA-QC-A7B5-01	IQCH	ENST00000358767.3,ENST00000335894.4,ENST00000360277.4,ENST00000514049.1,ENST00000546225.1	chr15	67692451:67692643:67709268:67709389:67713628:67713915,	67709269	67709389	67709268	67709268	Splice_Site	G	A	e15-1
SARC	TCGA-QC-A7B5-01	MAN2C1	ENST00000565683.1,ENST00000563441.1,ENST00000563539.1,ENST00000562071.1,ENST00000569482.1,ENST00000566256.1,ENST00000563622.1,ENST00000421803.2,ENST00000267978.5,ENST00000565534.1,ENST00000568374.1	chr15	75656928:75657006:75658862:75658933:75659851:75659975,	75658863	75658933	75658862	75658862	Splice_Site	C	T	e4+1
SARC	TCGA-QC-A7B5-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000467026.1,ENST00000486937.1,ENST00000291688.1	chr21	47660724:47660931:47662715:47662845:47663378:47663636,	47662716	47662845	47662715	47662715	Splice_Site	C	T	e25+1
SARC	TCGA-QC-A7B5-01	MFSD9	ENST00000428085.1,ENST00000411991.1	chr2	103340158:103340368:103343303:103343433:103347483:103347527,103340158:103340337:103343303:103343433:103347483:103347527,	103343304	103343433	103343434	103343434	Splice_Site	C	T	e4-1
SARC	TCGA-KF-A41W-01	MMP26	ENST00000300762.1,ENST00000380390.1	chr11	5011827:5011976:5012600:5012726:5013193:5013355,	5012601	5012726	5012728	5012728	Splice_Site	T	C	e4+2
SARC	TCGA-RN-AAAQ-01	MYO7A	ENST00000409709.3,ENST00000458169.2,ENST00000481328.3,ENST00000458637.2,ENST00000409619.2	chr11	76917141:76917247:76918333:76918447:76919474:76919562,	76918334	76918447	76918448	76918448	Splice_Site	G	T	e41+1
SARC	TCGA-RN-AAAQ-01	MYO7A	ENST00000605744.1	chr11	76917141:76917247:76918040:76918447:76919474:76919562,	76918041	76918447	76918448	76918448	Splice_Site	G	T	e41+1
SARC	TCGA-DX-A6B8-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183800020:183800103:183806797:183806891:183817132:183817230,	183806798	183806891	183806893	183806894	Splice_Site	-	A	e25-2
SARC	TCGA-IF-A4AK-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047806	96047807	Splice_Site	-	AA	e3+2
SARC	TCGA-QC-AA9N-01	NPLOC4	ENST00000571562.1	chr17	79579704:79579899:79580075:79580151:79580343:79580373,	79580076	79580151	79580153	79580154	Splice_Site	-	AAA	NULL
SARC	TCGA-DX-A8BQ-01A-11D-A37C-09	NT5DC3	ENST00000392876.3	chr12	104179112:104179253:104181218:104181305:104182615:104182697,	104181219	104181305	104181307	104181307	Splice_Site	T	G	e11-2
SARC	TCGA-DX-A8BQ-01A-11D-A37C-09	NUDCD2	ENST00000302764.4	chr5	162880928:162881056:162883934:162884086:162884567:162884616,	162883935	162884086	162884088	162884089	Splice_Site	-	A	e3-2
SARC	TCGA-3B-A9HY-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17629626:17629770:17632880:17633075:17637383:17638001,	17632881	17633075	17633077	17633078	Splice_Site	-	A	e18-2
SARC	TCGA-DX-A7EU-01	OGDHL	ENST00000432695.1,ENST00000374103.4,ENST00000419399.1	chr10	50953458:50953542:50953843:50954023:50954795:50954879,	50953844	50954023	50953842	50953842	Splice_Site	A	G	e10+2
SARC	TCGA-WK-A8XZ-01	P4HA3	ENST00000525968.1	chr11	73984589:73984652:73990432:73990497:73996853:73997030,	73990433	73990497	73990432	73990432	Splice_Site	C	T	e8+1
SARC	TCGA-DX-A8BT-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000418087.1,ENST00000475273.2,ENST00000356327.5,ENST00000342215.6,ENST00000498278.1	chr3	171453281:171453427:171455321:171455449:171455681:171455872,	171455322	171455449	171455451	171455452	Splice_Site	-	A	e2-2
SARC	TCGA-X6-A8C4-01	POLQ	ENST00000264233.5	chr3	121200418:121200659:121202232:121202429:121203887:121204031,	121202233	121202429	121202431	121202431	Splice_Site	T	-	e18-2
SARC	TCGA-3B-A9HJ-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000513214.1,ENST00000354312.3,ENST00000521422.1,ENST00000345306.6	chr5	68689180:68689327:68692223:68692373:68695875:68695996,	68692224	68692373	68692375	68692376	Splice_Site	-	A	e13+2
SARC	TCGA-DX-A8BG-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953787	48953787	Splice_Site	G	A	e14+1
SARC	TCGA-DX-A8BG-01	RPS6KL1	ENST00000358328.4,ENST00000354625.2,ENST00000557413.1,ENST00000555009.1,ENST00000555647.1	chr14	75375552:75375635:75375803:75375893:75377950:75377979,75375552:75375635:75375803:75375893:75376245:75376371,	75375804	75375893	75375803	75375803	Splice_Site	C	T	e7+1
SARC	TCGA-DX-A8BG-01	RPS6KL1	ENST00000555834.1	chr14	75375552:75375635:75375803:75376851:75377950:75377979,	75375804	75376851	75375803	75375803	Splice_Site	C	T	e7+1
SARC	TCGA-DX-A8BG-01	RPS6KL1	ENST00000556848.1	chr14	75375552:75375635:75375803:75375864:75376245:75376371,	75375804	75375864	75375803	75375803	Splice_Site	C	T	e7+1
SARC	TCGA-Z4-AAPG-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022582	64022583	Splice_Site	-	A	e2-2
SARC	TCGA-K1-A6RT-01	SCAP	ENST00000265565.5	chr3	47469128:47469157:47470002:47470160:47476497:47476627,	47470003	47470160	47470002	47470002	Splice_Site	C	T	e3+1
SARC	TCGA-SI-A71O-01	SEC24D	ENST00000419654.2,ENST00000511481.1,ENST00000379735.5,ENST00000514561.1,ENST00000511033.1,ENST00000280551.6,ENST00000505134.1,ENST00000429811.2	chr4	119665228:119665313:119666098:119666215:119673150:119673244,	119666099	119666215	119666217	119666218	Splice_Site	-	A	e13-2
SARC	TCGA-QC-A7B5-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72139064:72139339:72152078:72152348:72165697:72165844,	72152079	72152348	72152078	72152078	Splice_Site	G	A	e9-1
SARC	TCGA-X6-A8C6-01	TBC1D1	ENST00000261439.4,ENST00000401554.1,ENST00000407365.1,ENST00000510573.2	chr4	38117520:38117575:38119653:38119813:38126582:38126752,	38119654	38119813	38119814	38119814	Splice_Site	G	A	e16+1
SARC	TCGA-DX-A48V-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576852	7576852	Splice_Site	C	A	e8+1
SARC	TCGA-QC-A7B5-01	VWA3B	ENST00000433678.1,ENST00000409460.1,ENST00000477737.1,ENST00000435344.1,ENST00000422503.2,ENST00000451075.2	chr2	98797478:98797675:98804437:98804592:98809360:98809499,	98804438	98804592	98804437	98804437	Splice_Site	G	A	e9-1
SARC	TCGA-DX-A8BX-01	YWHAE	ENST00000466227.2	chr17	1257510:1257641:1265223:1265302:1268152:1268352,	1265224	1265302	1265304	1265305	Splice_Site	-	A	e3-2
SARC	TCGA-DX-A8BX-01	YWHAE	ENST00000264335.8,ENST00000571732.1	chr17	1264385:1264592:1265195:1265302:1268152:1268352,	1265196	1265302	1265304	1265305	Splice_Site	-	A	e3-2
SARC	TCGA-K1-A6RU-01	ZNF43	ENST00000354959.4	chr19	22000719:22000788:22001896:22002023:22025946:22026128,22000719:22000788:22001896:22002023:22018837:22018989,	22001897	22002023	22002025	22002026	Splice_Site	-	A	e2-2
SKCM	TCGA-D3-A2JD-06	SLC4A10	ENST00000446228.1,ENST00000446997.1,ENST00000375514.5,ENST00000415876.2	chr2	162833269:162833386:162834231:162834270:162839688:162839755,	162834232	162834270	162834230	162834230	Splice_Site	A	G	.
SKCM	TCGA-EE-A3AG-06	PCDH15	ENST00000395430.1,ENST00000414778.1,ENST00000395433.1,ENST00000395432.2	chr10	55587152:55587308:55591074:55591293:55600079:55600256,	55591075	55591293	55591294	55591294	Splice_Site	C	T	.
SKCM	TCGA-EE-A3AG-06	ATP8B1	ENST00000589147.1,ENST00000591728.1,ENST00000283684.4,ENST00000536015.1	chr18	55368320:55368332:55368446:55368545:55371786:55371900,	55368447	55368545	55368546	55368546	Splice_Site	C	T	.
SKCM	TCGA-EE-A3AG-06	KCNQ4	ENST00000347132.5,ENST00000506017.1,ENST00000443478.3,ENST00000509682.2	chr1	41298685:41298785:41300638:41300770:41303336:41303466,	41300639	41300770	41300637	41300637	Splice_Site	A	C	.
SKCM	TCGA-EE-A3AG-06	SNAP47	ENST00000366760.1	chr1	227923136:227923200:227946695:227947186:227954659:227954784,227916407:227916487:227946695:227947186:227954659:227954784,	227946696	227947186	227947188	227947188	Splice_Site	T	C	.
SKCM	TCGA-FS-A1ZJ-06	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32366972:32367015:32368404:32368484:32370005:32370076,	32368405	32368484	32368403	32368403	Splice_Site	A	G	.
SKCM	TCGA-EE-A2MD-06	MAPT	ENST00000570299.1,ENST00000334239.8,ENST00000446361.3	chr17	43972039:43972052:44039686:44039836:44049224:44049311,43972039:43972052:44039686:44039836:44055740:44055791,	44039687	44039836	44039838	44039838	Splice_Site	T	C	.
SKCM	TCGA-EE-A2MD-06	BRIP1	ENST00000577598.1,ENST00000259008.2	chr17	59763357:59763526:59770790:59770873:59793311:59793424,	59770791	59770873	59770874	59770874	Splice_Site	C	T	.
SKCM	TCGA-EE-A2MD-06	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000577827.1,ENST00000400060.4	chr18	8343420:8343518:8370887:8371004:8376043:8376198,	8370888	8371004	8370887	8370887	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MD-06	RAD23A	ENST00000316856.3,ENST00000588329.1,ENST00000588826.2,ENST00000592268.1,ENST00000586534.1	chr19	13058667:13058823:13058990:13059172:13059499:13059627,13058661:13058823:13058990:13059172:13059310:13059366,	13058991	13059172	13058990	13058990	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MD-06	PHC3	ENST00000467570.1,ENST00000495893.2,ENST00000494943.1	chr3	169820589:169820722:169824619:169824734:169831147:169831307,	169824620	169824734	169824618	169824618	Splice_Site	A	G	.
SKCM	TCGA-FS-A1ZT-06	NLRP5	ENST00000390649.3	chr19	56544907:56545075:56549390:56549561:56552287:56552458,	56549391	56549561	56549390	56549390	Splice_Site	G	A	.
SKCM	TCGA-GN-A262-06	C16orf45	ENST00000300006.4,ENST00000452191.2,ENST00000565913.1	chr16	15675073:15675188:15677012:15677095:15681352:15681705,15675073:15675188:15677012:15677095:15680573:15681214,	15677013	15677095	15677012	15677012	Splice_Site	G	A	.
SKCM	TCGA-GN-A262-06	PRRG2	ENST00000597121.1	chr19	50086463:50086561:50086631:50086974:50087169:50087204,	50086632	50086974	50086975	50086975	Splice_Site	G	A	.
SKCM	TCGA-GN-A262-06	PRRG2	ENST00000596877.1,ENST00000246794.5	chr19	50086463:50086561:50086798:50086974:50087169:50087204,	50086799	50086974	50086975	50086975	Splice_Site	G	A	.
SKCM	TCGA-ER-A19B-06	ZNF385D	ENST00000281523.2	chr3	21552352:21552515:21606065:21606176:21706377:21706520,	21606066	21606176	21606177	21606177	Splice_Site	C	T	.
SKCM	TCGA-ER-A19B-06	AHCYL2	ENST00000325006.3,ENST00000531335.2,ENST00000446544.2,ENST00000490911.1,ENST00000474594.1,ENST00000466924.1,ENST00000446212.1	chr7	129045676:129045740:129046218:129046307:129049316:129049387,	129046219	129046307	129046309	129046309	Splice_Site	T	C	.
SKCM	TCGA-EE-A20C-06	ISM2	ENST00000342219.4,ENST00000472744.1,ENST00000493585.1	chr14	77950665:77950908:77951019:77951262:77964995:77965210,	77951020	77951262	77951263	77951263	Splice_Site	C	T	.
SKCM	TCGA-EE-A20C-06	KIAA0100	ENST00000583403.1,ENST00000528896.2,ENST00000577417.1,ENST00000389003.3,ENST00000544884.1,ENST00000580882.1	chr17	26969045:26969096:26969292:26969353:26969886:26970005,	26969293	26969353	26969291	26969291	Splice_Site	A	G	.
SKCM	TCGA-EE-A20C-06	ITGB6	ENST00000409872.1,ENST00000409583.1,ENST00000428609.2,ENST00000283249.2,ENST00000409967.2,ENST00000485635.1	chr2	160998492:160998582:161025722:161025818:161029079:161029241,	161025723	161025818	161025819	161025819	Splice_Site	C	T	.
SKCM	TCGA-EE-A20C-06	C8orf34	ENST00000521406.1,ENST00000539993.1,ENST00000518698.1,ENST00000337103.4	chr8	69699677:69699771:69728120:69728180:69730473:69730509,	69728121	69728180	69728120	69728120	Splice_Site	G	A	.
SKCM	TCGA-ER-A2NH-06	SLCO6A1	ENST00000379807.3,ENST00000506729.1	chr5	101811425:101811497:101813379:101813565:101815880:101816138,	101813380	101813565	101813566	101813566	Splice_Site	C	T	.
SKCM	TCGA-BF-A1PV-01	SETBP1	ENST00000282030.5	chr18	42529845:42533305:42618449:42618620:42643043:42648475,	42618450	42618620	42618621	42618621	Splice_Site	G	A	.
SKCM	TCGA-BF-A1PV-01	TRAF3IP3	ENST00000476050.1,ENST00000367023.1,ENST00000477431.1,ENST00000474496.1	chr1	209936836:209936932:209946292:209946364:209948693:209948834,209941959:209942005:209946292:209946364:209948693:209948834,	209946293	209946364	209946292	209946292	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZP-06	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785771	28785771	Splice_Site	T	G	.
SKCM	TCGA-FS-A1ZP-06	CEP78	ENST00000459817.2	chr9	80869758:80869880:80879065:80879232:80880287:80880317,	80879066	80879232	80879234	80879234	Splice_Site	T	G	.
SKCM	TCGA-FS-A1Z3-06	RBFOX1	ENST00000355637.4,ENST00000436368.2,ENST00000311745.5	chr16	7703867:7703949:7721558:7721601:7726775:7726840,	7721559	7721601	7721558	7721558	Splice_Site	G	A	.
SKCM	TCGA-GF-A3OT-06	SPTBN5	ENST00000320955.6	chr15	42171457:42171697:42171931:42172062:42172357:42172510,	42171932	42172062	42172063	42172063	Splice_Site	C	T	.
SKCM	TCGA-GF-A3OT-06	PLEKHO1	ENST00000369126.1,ENST00000479194.1,ENST00000025469.6,ENST00000369124.4	chr1	150123101:150123248:150128259:150128400:150129104:150129209,	150128260	150128400	150128401	150128401	Splice_Site	G	A	.
SKCM	TCGA-GF-A3OT-06	MSR1	ENST00000445506.2,ENST00000262101.5	chr8	15977926:15978115:16001066:16001120:16007739:16007820,	16001067	16001120	16001121	16001121	Splice_Site	C	T	.
SKCM	TCGA-BF-A3DJ-01	CYP3A5	ENST00000343703.5,ENST00000339843.2,ENST00000466061.1,ENST00000461920.1,ENST00000481825.1,ENST00000469887.1,ENST00000222982.4	chr7	99261590:99261718:99262788:99262937:99264335:99264433,99261590:99261718:99262788:99262937:99264223:99264312,	99262789	99262937	99262788	99262788	Splice_Site	C	T	.
SKCM	TCGA-BF-A3DJ-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000522181.1	chr8	92406024:92406079:92406163:92406267:92407289:92407877,	92406164	92406267	92406163	92406163	Splice_Site	G	C	.
SKCM	TCGA-IH-A3EA-01	PRLR	ENST00000509839.1,ENST00000513753.1,ENST00000382002.5,ENST00000514206.1,ENST00000503330.1,ENST00000542609.1,ENST00000310101.5,ENST00000348262.3	chr5	35084636:35084741:35086309:35086442:35089652:35089722,	35086310	35086442	35086443	35086443	Splice_Site	C	G	.
SKCM	TCGA-GN-A268-06	ITGB1BP2	ENST00000538820.1,ENST00000373829.3,ENST00000483897.1	chrX	70523310:70523366:70523476:70523547:70523661:70523761,	70523477	70523547	70523548	70523548	Splice_Site	G	A	.
SKCM	TCGA-D3-A2JK-06	ARL13B	ENST00000486562.1	chr3	93722502:93722752:93754174:93754280:93755395:93755598,93699131:93699326:93754174:93754280:93755395:93755598,93714721:93714788:93754174:93754280:93755395:93755598,	93754175	93754280	93754282	93754282	Splice_Site	T	C	.
SKCM	TCGA-ER-A2NE-06	TCN2	ENST00000215838.3,ENST00000405742.3,ENST00000450638.1	chr22	31008871:31009029:31010335:31010488:31011287:31011460,	31010336	31010488	31010335	31010335	Splice_Site	G	A	.
SKCM	TCGA-EE-A3JI-06	TM7SF3	ENST00000535260.1,ENST00000343028.4,ENST00000543655.1,ENST00000545303.1,ENST00000535819.1	chr12	27136425:27136529:27143382:27143560:27148169:27148201,27135705:27135792:27143382:27143560:27148169:27148201,	27143383	27143560	27143381	27143381	Splice_Site	A	C	.
SKCM	TCGA-EE-A3JI-06	PRC1	ENST00000556982.1,ENST00000394249.3,ENST00000442656.2,ENST00000361188.5,ENST00000361919.3	chr15	91522437:91522524:91523471:91523619:91524113:91524263,	91523472	91523619	91523621	91523621	Splice_Site	T	G	.
SKCM	TCGA-EE-A3JI-06	ELMOD3	ENST00000462891.3,ENST00000444108.3,ENST00000410106.1,ENST00000409890.2,ENST00000414593.1,ENST00000409013.3,ENST00000409344.3,ENST00000490508.1,ENST00000488150.1,ENST00000418268.1,ENST00000446464.3,ENST00000423095.3,ENST00000393852.4,ENST00000428955.2,ENST00000409331.2,ENST00000315658.7	chr2	85589355:85589383:85590219:85590289:85595808:85595863,	85590220	85590289	85590219	85590219	Splice_Site	G	A	.
SKCM	TCGA-EE-A3JI-06	NOL6	ENST00000297990.4,ENST00000455041.2,ENST00000379471.2	chr9	33465731:33465895:33466068:33466223:33466305:33466423,	33466069	33466223	33466067	33466067	Splice_Site	A	G	.
SKCM	TCGA-EE-A3J5-06	PCDH15	ENST00000373955.1,ENST00000320301.6,ENST00000395446.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000373957.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55839090:55839184:55849743:55849823:55892634:55892767,	55849744	55849823	55849824	55849824	Splice_Site	C	T	.
SKCM	TCGA-EE-A3J5-06	CLUAP1	ENST00000573370.1,ENST00000574592.1,ENST00000576634.1,ENST00000341633.5,ENST00000417763.2,ENST00000571025.1	chr16	3558288:3558468:3562382:3562478:3565507:3565551,	3562383	3562478	3562382	3562382	Splice_Site	G	A	.
SKCM	TCGA-EE-A3J5-06	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654858	29654858	Splice_Site	G	A	.
SKCM	TCGA-EE-A3J5-06	AGAP1	ENST00000448025.1,ENST00000428334.2,ENST00000304032.8	chr2	236792038:236792093:236817381:236817550:236877105:236877267,236792038:236792093:236817381:236817550:236839408:236839567,	236817382	236817550	236817381	236817381	Splice_Site	G	A	.
SKCM	TCGA-EE-A3J5-06	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2	chr7	101559394:101559505:101671377:101671425:101713618:101713697,	101671378	101671425	101671377	101671377	Splice_Site	G	A	.
SKCM	TCGA-EE-A3J5-06	AKR1D1	ENST00000411726.2,ENST00000432161.1,ENST00000242375.3	chr7	137761263:137761357:137773346:137773514:137776513:137776630,	137773347	137773514	137773515	137773515	Splice_Site	G	A	.
SKCM	TCGA-DA-A3F3-06	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
SKCM	TCGA-FW-A3TU-06	ISPD	ENST00000407010.2	chr7	16348147:16348252:16415716:16415866:16445685:16445962,	16415717	16415866	16415867	16415867	Splice_Site	C	T	.
SKCM	TCGA-FW-A3TU-06	FKBP6	ENST00000445032.1,ENST00000413573.2,ENST00000252037.4,ENST00000431982.2	chr7	72744152:72744355:72745659:72745779:72754639:72754834,	72745660	72745779	72745659	72745659	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZQ-06	PPM1G	ENST00000350803.4,ENST00000472077.1,ENST00000344034.4	chr2	27604992:27605095:27605342:27605472:27606232:27606467,	27605343	27605472	27605342	27605342	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GH-06	GLB1L	ENST00000295759.7,ENST00000392089.2	chr2	220104518:220104555:220104641:220104816:220104912:220104956,	220104642	220104816	220104817	220104817	Splice_Site	C	T	.
SKCM	TCGA-D3-A2JC-06	CASP8	ENST00000392258.3,ENST00000392266.3,ENST00000413726.1,ENST00000392259.2,ENST00000432109.2,ENST00000323492.7,ENST00000447616.1,ENST00000264274.9,ENST00000358485.4,ENST00000392263.2,ENST00000339403.6,ENST00000471383.1,ENST00000437283.1	chr2	202131209:202131514:202136238:202136344:202137360:202137448,	202136239	202136344	202136345	202136346	Splice_Site	-	T	.
SKCM	TCGA-DA-A1IC-06	WDR11	ENST00000263461.6,ENST00000604509.1,ENST00000605543.1	chr10	122664830:122664928:122665387:122665533:122666287:122666367,	122665388	122665533	122665387	122665387	Splice_Site	G	A	.
SKCM	TCGA-DA-A1IC-06	TRPC6	ENST00000348423.4,ENST00000344327.3,ENST00000532133.1,ENST00000360497.4	chr11	101325748:101325832:101340157:101340232:101341913:101342117,	101340158	101340232	101340233	101340233	Splice_Site	C	T	.
SKCM	TCGA-DA-A1IC-06	TBC1D15	ENST00000472611.2	chr12	72265849:72265948:72266708:72266783:72274248:72274387,72265849:72265948:72266708:72266783:72278590:72278681,	72266709	72266783	72266708	72266708	Splice_Site	G	A	.
SKCM	TCGA-DA-A1IC-06	NDUFAF1	ENST00000260361.4	chr15	41679691:41679791:41680645:41680720:41687056:41687242,	41680646	41680720	41680721	41680721	Splice_Site	C	T	.
SKCM	TCGA-DA-A1IC-06	CALB2	ENST00000302628.4,ENST00000349553.5,ENST00000562305.1	chr16	71408647:71408737:71411569:71411650:71416621:71416678,	71411570	71411650	71411569	71411569	Splice_Site	G	A	.
SKCM	TCGA-DA-A1IC-06	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000343706.4,ENST00000404234.3,ENST00000360929.3,ENST00000403121.1	chr22	26709729:26709868:26736401:26736598:26743684:26743879,	26736402	26736598	26736599	26736599	Splice_Site	G	A	.
SKCM	TCGA-DA-A1IC-06	PCSK5	ENST00000424854.2,ENST00000545128.1,ENST00000376752.4	chr9	78796313:78796507:78799588:78799673:78803493:78803591,	78799589	78799673	78799588	78799588	Splice_Site	G	A	.
SKCM	TCGA-EE-A2ML-06	ZNF250	ENST00000292579.7,ENST00000525694.1,ENST00000417550.2,ENST00000533622.1	chr8	146105749:146105843:146112224:146112287:146114965:146115079,146108144:146108221:146112224:146112287:146114965:146115079,	146112225	146112287	146112289	146112289	Splice_Site	T	C	.
SKCM	TCGA-EE-A2ML-06	PPP6C	ENST00000373547.4,ENST00000456642.1,ENST00000451402.1	chr9	127920519:127920661:127923119:127923185:127933363:127933459,	127923120	127923185	127923119	127923119	Splice_Site	C	G	.
SKCM	TCGA-ER-A193-06	AMPD3	ENST00000529834.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000444303.2	chr11	10503609:10503772:10506366:10506586:10508781:10508911,	10506367	10506586	10506366	10506366	Splice_Site	G	A	.
SKCM	TCGA-ER-A193-06	TSPAN12	ENST00000450414.1,ENST00000222747.3,ENST00000415871.1	chr7	120428427:120428951:120446602:120446746:120450516:120450624,	120446603	120446746	120446602	120446602	Splice_Site	C	T	.
SKCM	TCGA-D3-A3MU-06	APBB1IP	ENST00000376236.4,ENST00000356785.4	chr10	26781255:26781327:26785232:26785320:26789747:26790040,	26785233	26785320	26785232	26785232	Splice_Site	G	A	.
SKCM	TCGA-D3-A3MU-06	SCUBE1	ENST00000360835.4,ENST00000290460.7	chr22	43658725:43658851:43687051:43687186:43715942:43716071,	43687052	43687186	43687051	43687051	Splice_Site	C	T	.
SKCM	TCGA-D3-A3MU-06	COL4A4	ENST00000329662.7,ENST00000396625.3	chr2	227907792:227907900:227912190:227912265:227914783:227914847,	227912191	227912265	227912266	227912266	Splice_Site	C	T	.
SKCM	TCGA-D3-A3MU-06	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326027	89326027	Splice_Site	G	A	.
SKCM	TCGA-ER-A199-06	SCP2	ENST00000371509.4,ENST00000371513.5	chr1	53416426:53416558:53420411:53420476:53427174:53427301,53413680:53413752:53420411:53420476:53427174:53427301,	53420412	53420476	53420478	53420478	Splice_Site	T	A	.
SKCM	TCGA-EE-A2GM-06	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18180988:18181671:18183849:18183972:18186011:18186127,	18183850	18183972	18183973	18183973	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GM-06	KCNQ4	ENST00000347132.5,ENST00000506017.1,ENST00000443478.3,ENST00000509682.2	chr1	41298685:41298785:41300638:41300770:41303336:41303466,	41300639	41300770	41300638	41300638	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GM-06	GRIA1	ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153149727:153149975:153174180:153174295:153181915:153182050,	153174181	153174295	153174180	153174180	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GM-06	SUPT3H	ENST00000475057.1	chr6	44777053:44777238:44797500:44797594:44900389:44900500,	44797501	44797594	44797595	44797595	Splice_Site	C	T	.
SKCM	TCGA-EB-A3XD-01	B4GALT3	ENST00000319769.5,ENST00000493164.1	chr1	161144841:161145018:161145597:161145864:161146223:161146298,	161145598	161145864	161145865	161145865	Splice_Site	C	T	.
SKCM	TCGA-D3-A5GS-06	IL4I1	ENST00000341114.3,ENST00000601717.1,ENST00000595948.1,ENST00000391826.2	chr19	50397530:50397726:50398324:50398437:50399071:50399310,	50398325	50398437	50398439	50398439	Splice_Site	T	C	.
SKCM	TCGA-D3-A1Q1-06	TTPAL	ENST00000262605.4,ENST00000372904.3	chr20	43112976:43113170:43115235:43115346:43117903:43118094,	43115236	43115346	43115234	43115234	Splice_Site	A	G	.
SKCM	TCGA-ER-A19J-06	SLC16A14	ENST00000457406.1,ENST00000412034.1,ENST00000295190.4	chr2	230911330:230911438:230914476:230914620:230923809:230924082,	230914477	230914620	230914621	230914621	Splice_Site	C	T	.
SKCM	TCGA-ER-A19J-06	GPR143	ENST00000447366.1,ENST00000380929.2,ENST00000467482.1	chrX	9709377:9709495:9711604:9711713:9714083:9714193,	9711605	9711713	9711604	9711604	Splice_Site	C	G	.
SKCM	TCGA-GF-A6C9-06	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34146966:34147113:34149980:34150115:34151775:34151932,	34149981	34150115	34150116	34150116	Splice_Site	G	A	.
SKCM	TCGA-GF-A6C9-06	E2F4	ENST00000568839.1	chr16	67226663:67226773:67227324:67227418:67228300:67228362,	67227325	67227418	67227419	67227419	Splice_Site	G	A	.
SKCM	TCGA-GF-A6C9-06	ASTN1	ENST00000361833.2,ENST00000424564.2,ENST00000367654.3,ENST00000367657.3	chr1	176903287:176903476:176905401:176905506:176913026:176913154,	176905402	176905506	176905401	176905401	Splice_Site	C	T	.
SKCM	TCGA-GF-A6C9-06	SAMHD1	ENST00000262878.4	chr20	35526842:35526947:35532559:35532652:35533766:35533797,	35532560	35532652	35532654	35532654	Splice_Site	T	A	.
SKCM	TCGA-GF-A6C9-06	SEMA4F	ENST00000420077.1	chr2	74884691:74884751:74884979:74885078:74889858:74889952,74884691:74884751:74884979:74885078:74900583:74900626,	74884980	74885078	74884979	74884979	Splice_Site	G	A	.
SKCM	TCGA-GF-A6C9-06	IL17RE	ENST00000421412.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3,ENST00000383815.3,ENST00000434065.1	chr3	9952940:9952984:9953126:9953281:9955639:9955708,	9953127	9953281	9953126	9953126	Splice_Site	G	A	.
SKCM	TCGA-GF-A6C9-06	MTRR	ENST00000510525.1,ENST00000513439.1,ENST00000511461.1,ENST00000440940.2,ENST00000512311.1,ENST00000264668.2	chr5	7889207:7889388:7891484:7891527:7892839:7892876,	7891485	7891527	7891483	7891483	Splice_Site	A	G	.
SKCM	TCGA-EE-A3JA-06	CLEC2B	ENST00000228438.2	chr12	10005731:10006007:10006979:10007083:10010072:10010236,	10006980	10007083	10007084	10007084	Splice_Site	C	T	.
SKCM	TCGA-EE-A3JA-06	COL4A1	ENST00000375820.4	chr13	110804680:110804853:110807629:110807744:110813538:110813716,	110807630	110807744	110807629	110807629	Splice_Site	C	T	.
SKCM	TCGA-EE-A3JA-06	PTPRC	ENST00000352140.3,ENST00000367376.2,ENST00000529828.1,ENST00000442510.2,ENST00000418674.1	chr1	198661475:198661502:198665840:198666038:198668692:198668749,	198665841	198666038	198665840	198665840	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZC-06	CHD3	ENST00000470531.1,ENST00000358181.4,ENST00000330494.7,ENST00000466233.1,ENST00000380358.4	chr17	7807759:7807937:7808417:7808483:7808938:7808974,	7808418	7808483	7808417	7808417	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZC-06	PROM2	ENST00000478295.1,ENST00000431567.1,ENST00000403131.2,ENST00000317620.9,ENST00000317668.4,ENST00000542147.1	chr2	95943677:95943752:95944468:95944532:95944732:95944892,	95944469	95944532	95944534	95944534	Splice_Site	T	C	.
SKCM	TCGA-EE-A17X-06	UHMK1	ENST00000489294.1,ENST00000282169.8,ENST00000545294.1	chr1	162482514:162482613:162487891:162487980:162492193:162492435,	162487892	162487980	162487890	162487890	Splice_Site	A	G	.
SKCM	TCGA-GN-A263-01	HDAC3	ENST00000519474.1,ENST00000523088.1,ENST00000305264.3,ENST00000469550.2	chr5	141008171:141008206:141008739:141008873:141009250:141009306,	141008740	141008873	141008874	141008874	Splice_Site	C	T	.
SKCM	TCGA-D3-A51F-06	IL32	ENST00000534748.2,ENST00000530890.1,ENST00000533097.2	chr16	3115404:3115495:3115784:3115827:3117377:3117416,3115677:3115711:3115784:3115827:3117377:3117416,3115662:3115688:3115784:3115827:3117377:3117416,3115631:3115656:3115784:3115827:3117377:3117416,	3115785	3115827	3115784	3115784	Splice_Site	G	T	.
SKCM	TCGA-FR-A3YN-06	TEX26	ENST00000380473.3	chr13	31526796:31526962:31531009:31531166:31540358:31540535,	31531010	31531166	31531168	31531168	Splice_Site	T	A	.
SKCM	TCGA-FR-A3YN-06	PER3	ENST00000377541.1,ENST00000361923.2,ENST00000377532.3	chr1	7861172:7861251:7863106:7863213:7863751:7863908,	7863107	7863213	7863106	7863106	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MC-06	CARD14	ENST00000570421.1,ENST00000573754.1,ENST00000344227.2,ENST00000573882.1,ENST00000392434.2,ENST00000571450.1,ENST00000571861.1,ENST00000575500.1	chr17	78164640:78164698:78165121:78165271:78166301:78166418,	78165122	78165271	78165120	78165120	Splice_Site	A	C	.
SKCM	TCGA-EE-A2MC-06	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000579951.1,ENST00000400111.3,ENST00000544123.1,ENST00000545076.1,ENST00000578618.1,ENST00000427684.2,ENST00000542652.2	chr18	5395065:5395146:5395607:5395706:5396199:5396331,	5395608	5395706	5395607	5395607	Splice_Site	C	-	.
SKCM	TCGA-EE-A3JB-06	FTSJ1	ENST00000467954.1,ENST00000348411.2,ENST00000396894.4	chrX	48339869:48339916:48340019:48340103:48340796:48340872,48339869:48339916:48340019:48340103:48340790:48340894,	48340020	48340103	48340019	48340019	Splice_Site	G	A	.
SKCM	TCGA-D3-A51G-06	LRRC41	ENST00000498402.1,ENST00000472710.1,ENST00000343304.6	chr1	46751033:46752171:46763234:46763305:46763955:46764042,	46763235	46763305	46763234	46763234	Splice_Site	C	T	.
SKCM	TCGA-D3-A51G-06	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000346544.3,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000480737.1,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216246934:216247048:216248050:216248206:216248742:216248803,	216248051	216248206	216248207	216248207	Splice_Site	C	A	.
SKCM	TCGA-D3-A51G-06	MAATS1	ENST00000482573.1,ENST00000482927.1,ENST00000468630.1,ENST00000475093.1,ENST00000273390.5,ENST00000483134.1	chr3	119451232:119451323:119452210:119452353:119456212:119456329,	119452211	119452353	119452210	119452210	Splice_Site	G	A	.
SKCM	TCGA-D3-A51G-06	HNF4G	ENST00000354370.1	chr8	76402323:76402443:76456045:76456214:76459821:76459916,	76456046	76456214	76456045	76456045	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GN-06	EXT2	ENST00000343631.3,ENST00000534048.1,ENST00000533608.1,ENST00000395673.3	chr11	44151594:44151688:44193160:44193292:44219378:44219568,	44193161	44193292	44193160	44193160	Splice_Site	G	A	.
SKCM	TCGA-DA-A1I0-06	COL17A1	ENST00000353479.5	chr10	105799730:105799757:105800108:105800168:105800822:105800876,	105800109	105800168	105800169	105800169	Splice_Site	C	T	.
SKCM	TCGA-DA-A1I0-06	LAMA3	ENST00000399516.3,ENST00000313654.9,ENST00000269217.6,ENST00000587184.1,ENST00000588770.1	chr18	21523849:21523935:21526107:21526248:21529728:21529888,	21526108	21526248	21526249	21526249	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GJ-06	CCDC60	ENST00000327554.2	chr12	119954427:119954512:119957925:119957997:119960743:119960806,	119957926	119957997	119957998	119957998	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GJ-06	GPATCH4	ENST00000438976.2,ENST00000531129.1,ENST00000368232.4	chr1	156565872:156565923:156566178:156566270:156568018:156568111,156565872:156565923:156566178:156566270:156567826:156567913,	156566179	156566270	156566271	156566271	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GJ-06	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000350198.4,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102490108:102490226:102490543:102490714:102493464:102493608,	102490544	102490714	102490542	102490542	Splice_Site	A	C	.
SKCM	TCGA-EE-A2GJ-06	TFAP2B	ENST00000263046.4,ENST00000393655.3	chr6	50803773:50803993:50805687:50805806:50807868:50808010,	50805688	50805806	50805686	50805686	Splice_Site	A	C	.
SKCM	TCGA-EE-A20H-06	PLEKHG2	ENST00000458508.2,ENST00000409797.2,ENST00000478523.1,ENST00000378550.1,ENST00000409794.3	chr19	39911440:39911492:39911588:39911636:39911922:39911939,39911440:39911492:39911588:39911636:39911714:39911753,	39911589	39911636	39911637	39911637	Splice_Site	G	A	.
SKCM	TCGA-EE-A20H-06	SLC4A10	ENST00000446997.1,ENST00000421911.1,ENST00000535165.1,ENST00000493021.1	chr2	162728805:162728894:162730425:162730515:162735640:162735798,	162730426	162730515	162730517	162730517	Splice_Site	T	C	.
SKCM	TCGA-EE-A20H-06	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589536	67589536	Splice_Site	G	A	.
SKCM	TCGA-EE-A29L-06	GALNT14	ENST00000324589.5,ENST00000349752.5,ENST00000475320.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31133662:31133925:31135088:31135208:31152260:31152353,31133662:31133925:31135088:31135208:31146984:31147129,	31135089	31135208	31135209	31135209	Splice_Site	C	T	.
SKCM	TCGA-EE-A29L-06	TRPV6	ENST00000359396.3	chr7	142574576:142574590:142574894:142575032:142575403:142575526,	142574895	142575032	142575033	142575033	Splice_Site	C	T	.
SKCM	TCGA-EE-A182-06	SLC22A9	ENST00000536333.1	chr11	63149630:63149749:63173968:63174183:63175583:63175692,63149630:63149749:63173968:63174183:63177273:63177430,	63173969	63174183	63173968	63173968	Splice_Site	G	A	.
SKCM	TCGA-D9-A3Z1-06	SLCO3A1	ENST00000424469.2,ENST00000318445.6,ENST00000555549.1	chr15	92690213:92690389:92694179:92694244:92705985:92706176,	92694180	92694244	92694179	92694179	Splice_Site	G	A	.
SKCM	TCGA-D9-A3Z1-06	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66945801:66946043:66946144:66946333:66946406:66946483,	66946145	66946333	66946334	66946334	Splice_Site	C	T	.
SKCM	TCGA-GN-A267-06	CDC42SE2	ENST00000395246.1,ENST00000505065.1,ENST00000360515.3	chr5	130694901:130695240:130721235:130721337:130726685:130726801,	130721236	130721337	130721235	130721235	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AF-06	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16377972:16378042:16378204:16378315:16378692:16378906,	16378205	16378315	16378204	16378204	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AF-06	BRD8	ENST00000411594.2,ENST00000230901.5,ENST00000441656.1,ENST00000454473.1,ENST00000512140.1,ENST00000402931.1,ENST00000515014.1,ENST00000418329.1,ENST00000254900.5,ENST00000506167.1,ENST00000455658.2	chr5	137496656:137496757:137497484:137497553:137497742:137497835,	137497485	137497553	137497483	137497483	Splice_Site	A	C	.
SKCM	TCGA-D9-A6EC-06	PDSS1	ENST00000376203.5,ENST00000376215.5	chr10	26994236:26994323:26998566:26998697:27009063:27009288,26994236:26994323:26998566:26998697:27009146:27009288,	26998567	26998697	26998699	26998699	Splice_Site	T	G	.
SKCM	TCGA-D9-A6EC-06	ADCY4	ENST00000310677.4,ENST00000554781.1,ENST00000554577.1,ENST00000396747.3,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24792549:24792660:24793267:24793405:24793512:24793597,	24793268	24793405	24793406	24793406	Splice_Site	C	T	.
SKCM	TCGA-D9-A6EC-06	PRMT7	ENST00000339507.5,ENST00000568975.1,ENST00000441236.1,ENST00000449359.3	chr16	68381533:68381581:68382244:68382334:68386150:68386218,	68382245	68382334	68382243	68382243	Splice_Site	A	G	.
SKCM	TCGA-D9-A6EC-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578291	7578291	Splice_Site	T	G	.
SKCM	TCGA-D9-A6EC-06	CYP2S1	ENST00000542619.1,ENST00000595590.1,ENST00000593545.1,ENST00000310054.4	chr19	41707197:41707277:41711862:41712004:41712184:41712213,41709354:41709542:41711862:41712004:41712184:41712213,	41711863	41712004	41711862	41711862	Splice_Site	G	A	.
SKCM	TCGA-D9-A6EC-06	RNF144A	ENST00000320892.6,ENST00000416587.1	chr2	7081078:7081278:7137046:7137192:7154584:7154614,	7137047	7137192	7137194	7137194	Splice_Site	T	G	.
SKCM	TCGA-D9-A6EC-06	PLB1	ENST00000444257.1,ENST00000327757.5,ENST00000404858.1,ENST00000422425.2	chr2	28827593:28827626:28828719:28828815:28829362:28829434,	28828720	28828815	28828719	28828719	Splice_Site	G	A	.
SKCM	TCGA-D9-A6EC-06	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000440844.1	chr8	121357684:121357802:121379409:121379487:121381568:121381724,	121379410	121379487	121379409	121379409	Splice_Site	G	A	.
SKCM	TCGA-D9-A6EC-06	KDM4C	ENST00000535193.1,ENST00000489243.1,ENST00000438023.1,ENST00000442236.2,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3	chr9	6814630:6814745:6849506:6849700:6880011:6880061,	6849507	6849700	6849702	6849702	Splice_Site	C	T	.
SKCM	TCGA-DA-A1IA-06	VWA5A	ENST00000456829.2,ENST00000360334.4,ENST00000392748.1	chr11	124013148:124013279:124015943:124016070:124016572:124017616,	124015944	124016070	124016071	124016071	Splice_Site	G	T	.
SKCM	TCGA-FS-A1ZW-06	KIAA1217	ENST00000438429.1	chr10	24544256:24544525:24669797:24669996:24721923:24722122,24508554:24508838:24669797:24669996:24721923:24722122,24528123:24528266:24669797:24669996:24721923:24722122,	24669798	24669996	24669797	24669797	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZW-06	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000497062.2,ENST00000317304.6	chr20	45644886:45644936:45700823:45700891:45702796:45702974,	45700824	45700891	45700823	45700823	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZW-06	DNAH7	ENST00000410072.1,ENST00000427816.1,ENST00000312428.6	chr2	196912075:196912223:196913019:196913128:196915910:196915973,	196913020	196913128	196913019	196913019	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZW-06	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828111	121828111	Splice_Site	G	A	.
SKCM	TCGA-FS-A1YY-06	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000502551.1,ENST00000508761.1,ENST00000511278.1,ENST00000304623.8	chr5	11412146:11412181:11565055:11565168:11732247:11732384,	11565056	11565168	11565169	11565169	Splice_Site	C	T	.
SKCM	TCGA-FS-A1YY-06	SLC12A7	ENST00000264930.5	chr5	1076808:1076927:1077947:1078122:1078815:1078873,	1077948	1078122	1078124	1078125	Splice_Site	-	GCAG	.
SKCM	TCGA-BF-A5EQ-01	FBLN1	ENST00000348697.2,ENST00000340923.5,ENST00000327858.6,ENST00000442170.2,ENST00000262722.7,ENST00000402984.3	chr22	45929660:45929778:45931079:45931217:45937108:45937159,	45931080	45931217	45931079	45931079	Splice_Site	G	T	.
SKCM	TCGA-BF-A5EQ-01	CCNT2	ENST00000295238.6,ENST00000452839.1,ENST00000537343.1,ENST00000419781.1,ENST00000417175.1,ENST00000475094.1,ENST00000264157.5	chr2	135677379:135677461:135694410:135694539:135696571:135696632,	135694411	135694539	135694410	135694410	Splice_Site	G	A	.
SKCM	TCGA-BF-A5EQ-01	TBC1D1	ENST00000261439.4,ENST00000511238.1,ENST00000510573.2	chr4	38104668:38104778:38117330:38117575:38119653:38119813,	38117331	38117575	38117330	38117330	Splice_Site	G	A	.
SKCM	TCGA-BF-A5EQ-01	SLC10A7	ENST00000264986.3,ENST00000335472.7,ENST00000432059.2,ENST00000507030.1,ENST00000394062.3	chr4	147215081:147215247:147227077:147227161:147247112:147247148,	147227078	147227161	147227162	147227162	Splice_Site	C	T	.
SKCM	TCGA-BF-A5EQ-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	101008689:101008758:101011489:101011648:101014429:101014592,	101011490	101011648	101011649	101011649	Splice_Site	C	T	.
SKCM	TCGA-EB-A41A-01	NLRC5	ENST00000262510.6,ENST00000545081.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57095359:57095443:57095529:57095613:57099123:57099210,	57095530	57095613	57095528	57095528	Splice_Site	A	G	.
SKCM	TCGA-EB-A41A-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29677200:29677336:29679274:29679432:29683477:29683529,	29679275	29679432	29679433	29679433	Splice_Site	G	A	.
SKCM	TCGA-EB-A41A-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000263915.3	chr2	165349332:165349692:165350940:165351034:165353517:165353562,	165350941	165351034	165351035	165351035	Splice_Site	C	T	.
SKCM	TCGA-EB-A41A-01	ANKRD44	ENST00000424317.1,ENST00000282272.8,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197866476:197866564:197870417:197870634:197872529:197872647,	197870418	197870634	197870635	197870635	Splice_Site	C	G	.
SKCM	TCGA-EB-A41A-01	RNF32	ENST00000432459.2	chr7	156433572:156433649:156436494:156436586:156437192:156437233,156433464:156433505:156436494:156436586:156437192:156437233,156433477:156433698:156436494:156436586:156437192:156437233,	156436495	156436586	156436587	156436587	Splice_Site	G	A	.
SKCM	TCGA-EE-A2A2-06	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53664161:53664266:53664461:53664582:53666504:53666641,	53664462	53664582	53664583	53664583	Splice_Site	G	A	.
SKCM	TCGA-EE-A2A2-06	GTF2F1	ENST00000598607.1,ENST00000595047.1,ENST00000394456.5	chr19	6387515:6387570:6389454:6389648:6391912:6391963,	6389455	6389648	6389649	6389649	Splice_Site	C	T	.
SKCM	TCGA-EE-A2A2-06	ZNF562	ENST00000453792.2	chr19	9764433:9764557:9768684:9768811:9770054:9770143,9767222:9767329:9768684:9768811:9770054:9770143,9767222:9767329:9768684:9768811:9771395:9771497,9767222:9767329:9768684:9768811:9785690:9785720,	9768685	9768811	9768812	9768812	Splice_Site	C	T	.
SKCM	TCGA-EE-A2A2-06	TMEM63A	ENST00000366835.3	chr1	226054811:226054863:226055587:226055730:226058775:226058813,	226055588	226055730	226055587	226055587	Splice_Site	C	T	.
SKCM	TCGA-EE-A2A2-06	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000460299.1,ENST00000294952.8	chr2	48692104:48692128:48692631:48692781:48698225:48698327,	48692632	48692781	48692631	48692631	Splice_Site	G	-	.
SKCM	TCGA-EE-A2A2-06	AMZ1	ENST00000312371.4	chr7	2748221:2748350:2748708:2748878:2749273:2749450,	2748709	2748878	2748707	2748707	Splice_Site	A	G	.
SKCM	TCGA-EE-A2A2-06	UBE2W	ENST00000419880.3,ENST00000602969.1	chr8	74742615:74742707:74782503:74782536:74791042:74791110,	74782504	74782536	74782503	74782503	Splice_Site	C	T	.
SKCM	TCGA-EE-A2A2-06	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138856848:138857112:138864705:138864887:138865322:138865426,	138864706	138864887	138864889	138864889	Splice_Site	T	A	.
SKCM	TCGA-EB-A44R-06	DLL3	ENST00000600437.1,ENST00000205143.4,ENST00000356433.5	chr19	39993454:39993697:39994710:39994928:39995868:39996091,	39994711	39994928	39994710	39994710	Splice_Site	G	C	.
SKCM	TCGA-FR-A3R1-01	CPED1	ENST00000310396.5	chr7	120906280:120906501:120906760:120906862:120907268:120907356,	120906761	120906862	120906864	120906864	Splice_Site	T	A	.
SKCM	TCGA-DA-A1HY-06	SYT7	ENST00000263846.4,ENST00000545053.1	chr11	61300460:61300596:61318855:61318935:61323575:61323679,	61318856	61318935	61318936	61318936	Splice_Site	C	T	.
SKCM	TCGA-DA-A1HY-06	CD14	ENST00000512545.1,ENST00000401743.2	chr5	140012403:140012565:140012653:140012877:140013115:140013236,	140012654	140012877	140012653	140012653	Splice_Site	C	T	.
SKCM	TCGA-DA-A1HY-06	CD14	ENST00000498971.2	chr5	140012403:140012565:140012653:140012777:140013115:140013236,	140012654	140012777	140012653	140012653	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GL-06	SH3TC1	ENST00000508641.1,ENST00000539824.1,ENST00000515682.1,ENST00000507891.1,ENST00000245105.3	chr4	8217929:8217984:8218683:8218894:8219997:8220074,	8218684	8218894	8218683	8218683	Splice_Site	G	A	.
SKCM	TCGA-D3-A3C7-06	RFTN1	ENST00000334133.4,ENST00000432519.1	chr3	16399438:16399554:16411582:16411786:16419224:16419609,	16411583	16411786	16411787	16411787	Splice_Site	C	T	.
SKCM	TCGA-D3-A3C7-06	MAN1A1	ENST00000368468.3	chr6	119532010:119532095:119569424:119569519:119611847:119611928,119525923:119526047:119569424:119569519:119611847:119611928,	119569425	119569519	119569520	119569520	Splice_Site	C	T	.
SKCM	TCGA-D3-A3C7-06	ZSCAN25	ENST00000493443.1,ENST00000394150.1,ENST00000334715.3,ENST00000481424.1,ENST00000394152.2,ENST00000485586.1	chr7	99220171:99220263:99221679:99221803:99226813:99227091,	99221680	99221803	99221679	99221679	Splice_Site	G	A	.
SKCM	TCGA-BF-A5EO-01	BTBD2	ENST00000255608.4,ENST00000589685.1	chr19	1986828:1986975:1987164:1987252:1987498:1987691,	1987165	1987252	1987253	1987253	Splice_Site	C	T	.
SKCM	TCGA-BF-A5EO-01	CHI3L2	ENST00000369744.2,ENST00000477185.2,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000369748.4	chr1	111778260:111778385:111778645:111778775:111781371:111781381,	111778646	111778775	111778645	111778645	Splice_Site	G	A	.
SKCM	TCGA-BF-A5EO-01	SPHKAP	ENST00000344657.5,ENST00000392056.3	chr2	228892199:228892259:228973547:228973655:228996695:228996801,	228973548	228973655	228973656	228973656	Splice_Site	C	T	.
SKCM	TCGA-BF-A5EO-01	MTHFD2L	ENST00000395759.2,ENST00000461856.1,ENST00000492183.1,ENST00000325278.6	chr4	75091018:75091111:75147141:75147267:75167413:75167707,	75147142	75147267	75147141	75147141	Splice_Site	G	A	.
SKCM	TCGA-EE-A29V-06	COL5A3	ENST00000264828.3	chr19	10083594:10083702:10084245:10084299:10084431:10084485,	10084246	10084299	10084245	10084245	Splice_Site	C	T	.
SKCM	TCGA-EE-A29V-06	KHDRBS1	ENST00000492989.1	chr1	32495898:32496023:32498788:32498935:32502510:32502644,	32498789	32498935	32498788	32498788	Splice_Site	G	A	.
SKCM	TCGA-EE-A29V-06	MAPK1	ENST00000398822.3,ENST00000215832.6	chr22	22127161:22127271:22142545:22142677:22142982:22143097,	22142546	22142677	22142678	22142678	Splice_Site	C	T	.
SKCM	TCGA-EE-A29V-06	GRIA1	ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153149727:153149975:153174180:153174295:153181915:153182050,	153174181	153174295	153174180	153174180	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GR-06	YME1L1	ENST00000376016.3,ENST00000375972.3,ENST00000326799.3	chr10	27403449:27403536:27404988:27405062:27405147:27405256,	27404989	27405062	27404987	27404987	Splice_Site	A	G	.
SKCM	TCGA-EE-A2GR-06	MEIS2	ENST00000219869.9,ENST00000561264.2,ENST00000557796.2,ENST00000559371.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000314177.8,ENST00000397624.3,ENST00000561284.1,ENST00000340545.5,ENST00000424352.2	chr15	37184636:37184660:37186917:37187013:37187351:37187437,	37186918	37187013	37187014	37187014	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GR-06	SLC3A1	ENST00000260649.6,ENST00000409740.3,ENST00000409380.1	chr2	44539724:44539892:44540973:44541090:44547337:44547937,	44540974	44541090	44540973	44540973	Splice_Site	G	A	.
SKCM	TCGA-EE-A3J8-06	SELE	ENST00000367774.1,ENST00000367782.4,ENST00000367777.1,ENST00000367776.1,ENST00000333360.7,ENST00000367779.4,ENST00000367781.4	chr1	169698628:169698814:169699572:169699758:169700975:169701083,	169699573	169699758	169699572	169699572	Splice_Site	C	T	.
SKCM	TCGA-EE-A3J8-06	PKHD1L1	ENST00000378402.5	chr8	110400725:110400779:110401307:110401381:110402680:110402723,	110401308	110401381	110401307	110401307	Splice_Site	G	C	.
SKCM	TCGA-BF-A1Q0-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17616201:17616309:17617221:17617374:17622441:17622564,	17617222	17617374	17617376	17617377	Splice_Site	-	G	.
SKCM	TCGA-D3-A3MR-06	TARBP1	ENST00000496673.1,ENST00000040877.1	chr1	234529391:234529583:234534127:234534299:234536598:234536648,234529391:234529583:234534127:234534299:234536926:234536962,	234534128	234534299	234534127	234534127	Splice_Site	C	T	.
SKCM	TCGA-D3-A3MR-06	CD40	ENST00000477696.1	chr20	44747011:44747033:44750362:44750537:44750871:44750882,	44750363	44750537	44750538	44750538	Splice_Site	G	A	.
SKCM	TCGA-D3-A3MR-06	CD40	ENST00000372276.3,ENST00000489304.1,ENST00000466205.1	chr20	44747011:44747033:44750458:44750537:44750871:44750882,	44750459	44750537	44750538	44750538	Splice_Site	G	A	.
SKCM	TCGA-D3-A3MR-06	FN1	ENST00000438981.1,ENST00000460217.1,ENST00000443816.1,ENST00000492816.2,ENST00000346544.3,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216238044:216238134:216239936:216240116:216240351:216240412,	216239937	216240116	216239936	216239936	Splice_Site	C	T	.
SKCM	TCGA-D3-A3MR-06	SULT1E1	ENST00000226444.3	chr4	70707707:70707824:70709878:70710059:70713415:70713504,	70709879	70710059	70710060	70710060	Splice_Site	C	T	.
SKCM	TCGA-D3-A3MR-06	SGCE	ENST00000265735.7,ENST00000447873.1,ENST00000472326.2,ENST00000437425.2	chr7	94214781:94214827:94218000:94218044:94228086:94228275,	94218001	94218044	94218045	94218045	Splice_Site	C	T	.
SKCM	TCGA-EE-A2MH-06	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000394227.3,ENST00000527525.1	chr11	65408301:65409071:65409720:65409848:65409933:65410024,	65409721	65409848	65409850	65409850	Splice_Site	T	C	.
SKCM	TCGA-GN-A266-06	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000551162.1,ENST00000541270.1,ENST00000228327.6,ENST00000397909.2	chr12	78593114:78593311:78594252:78594371:78598714:78598918,	78594253	78594371	78594372	78594372	Splice_Site	G	A	.
SKCM	TCGA-GN-A266-06	PPFIA2	ENST00000550359.2,ENST00000550584.2,ENST00000333447.7,ENST00000443686.3,ENST00000549396.1,ENST00000549325.1,ENST00000548586.1	chr12	81676788:81676818:81678019:81678082:81688613:81688814,	81678020	81678082	81678083	81678083	Splice_Site	C	T	.
SKCM	TCGA-GN-A266-06	PIBF1	ENST00000326291.6	chr13	73401147:73401256:73401870:73402052:73409380:73409414,	73401871	73402052	73401869	73401869	Splice_Site	A	G	.
SKCM	TCGA-GN-A266-06	CAMSAP3	ENST00000446248.2	chr19	7671662:7671695:7672706:7672754:7673011:7673150,	7672707	7672754	7672755	7672755	Splice_Site	G	A	.
SKCM	TCGA-GN-A266-06	F13B	ENST00000367412.1	chr1	197008320:197008541:197009651:197009865:197019826:197019975,	197009652	197009865	197009650	197009650	Splice_Site	A	C	.
SKCM	TCGA-GN-A266-06	SIGLEC1	ENST00000344754.4	chr20	3667618:3669266:3669801:3669874:3670246:3670349,	3669802	3669874	3669801	3669801	Splice_Site	C	T	.
SKCM	TCGA-GN-A266-06	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380875.3,ENST00000427623.1,ENST00000380894.1	chr9	14740146:14740232:14746350:14746466:14746920:14747049,	14746351	14746466	14746467	14746467	Splice_Site	C	T	.
SKCM	TCGA-GN-A266-06	SVEP1	ENST00000401783.2,ENST00000374469.1	chr9	113173342:113174015:113189870:113190038:113191422:113191614,	113189871	113190038	113189870	113189870	Splice_Site	C	T	.
SKCM	TCGA-EB-A3XC-01	HSF2BP	ENST00000443485.1,ENST00000291560.2	chr21	45064169:45064273:45076467:45076618:45077941:45078025,	45076468	45076618	45076619	45076619	Splice_Site	C	T	.
SKCM	TCGA-EB-A3XC-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142850	31142850	Splice_Site	G	A	.
SKCM	TCGA-GF-A4EO-06	NLRP3	ENST00000336119.3,ENST00000366497.2,ENST00000391828.3,ENST00000366496.2	chr1	247587148:247588901:247592886:247593057:247597404:247597575,	247592887	247593057	247592886	247592886	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GC-06	RAB3GAP2	ENST00000484658.1,ENST00000474178.1,ENST00000358951.2	chr1	220379248:220379348:220383729:220383831:220384142:220384218,	220383730	220383831	220383832	220383832	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GC-06	BPIFA1	ENST00000375422.2,ENST00000354297.4,ENST00000375413.4	chr20	31827608:31827716:31828038:31828191:31829190:31829275,	31828039	31828191	31828038	31828038	Splice_Site	G	A	.
SKCM	TCGA-D3-A2JF-06	DIP2B	ENST00000301180.5	chr12	51080355:51080465:51086731:51086796:51089049:51089143,51084831:51084934:51086731:51086796:51089049:51089143,	51086732	51086796	51086731	51086731	Splice_Site	G	A	.
SKCM	TCGA-GF-A2C7-01	ALDH1A1	ENST00000297785.3	chr9	75520929:75520948:75524517:75524675:75526873:75527038,	75524518	75524675	75524517	75524517	Splice_Site	C	T	.
SKCM	TCGA-FW-A3I3-06	AKR1C2	ENST00000604428.1	chr10	5045943:5046206:5049598:5049698:5060091:5060126,5048186:5048244:5049598:5049698:5052535:5052845,	5049599	5049698	5049598	5049598	Splice_Site	C	G	.
SKCM	TCGA-ER-A2NC-06	FHL5	ENST00000541107.1,ENST00000450218.1,ENST00000326771.2	chr6	97051477:97051648:97052625:97052800:97053777:97053947,	97052626	97052800	97052625	97052625	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZM-06	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374511	180374511	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZM-06	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374511	180374511	Splice_Site	G	A	.
SKCM	TCGA-ER-A42L-06	COL1A1	ENST00000225964.5,ENST00000471344.1	chr17	48271512:48271544:48271709:48271808:48271933:48271987,	48271710	48271808	48271809	48271809	Splice_Site	C	T	.
SKCM	TCGA-ER-A42L-06	CLK1	ENST00000434813.2,ENST00000321356.4,ENST00000409403.2	chr2	201724402:201724469:201724847:201724938:201725960:201726189,	201724848	201724938	201724939	201724939	Splice_Site	C	T	.
SKCM	TCGA-D9-A4Z3-01	SENP1	ENST00000551330.1,ENST00000552189.1,ENST00000547181.1,ENST00000339976.6,ENST00000549518.1,ENST00000004980.5,ENST00000549595.1,ENST00000448372.1	chr12	48490125:48490210:48491776:48491907:48495251:48495255,	48491777	48491907	48491775	48491775	Splice_Site	A	G	.
SKCM	TCGA-D9-A4Z3-01	DHRS4	ENST00000558581.1,ENST00000313250.5,ENST00000421831.1	chr14	24435140:24435192:24435491:24435626:24436419:24436475,	24435492	24435626	24435491	24435491	Splice_Site	G	A	.
SKCM	TCGA-D9-A4Z3-01	PSD3	ENST00000440756.2	chr8	18729135:18730243:18793543:18793652:18871072:18871196,	18793544	18793652	18793653	18793653	Splice_Site	C	T	.
SKCM	TCGA-DA-A3F8-06	AACS	ENST00000536752.1,ENST00000261686.6,ENST00000418937.2	chr12	125549986:125550263:125558421:125558525:125561036:125561157,	125558422	125558525	125558421	125558421	Splice_Site	G	A	.
SKCM	TCGA-DA-A3F8-06	ADAMTSL1	ENST00000542621.1	chr9	18887828:18888041:18889565:18889746:18905779:18905889,	18889566	18889746	18889747	18889747	Splice_Site	G	A	.
SKCM	TCGA-DA-A3F8-06	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119028135:119028264:119033603:119033695:119065035:119065229,	119033604	119033695	119033603	119033603	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GI-06	ARHGEF15	ENST00000361926.3,ENST00000421050.1	chr17	8216818:8216873:8218223:8218282:8218383:8218595,	8218224	8218282	8218223	8218223	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GI-06	SLC39A11	ENST00000583146.1,ENST00000580557.1,ENST00000255559.3,ENST00000579732.1,ENST00000542342.2	chr17	71027694:71027853:71080946:71080985:71084795:71084914,	71080947	71080985	71080986	71080986	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GI-06	MGAT5B	ENST00000301618.4,ENST00000428789.2	chr17	74922678:74922812:74928726:74928857:74934069:74934225,	74928727	74928857	74928858	74928858	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GI-06	SEPT10	ENST00000468616.1	chr2	110310663:110310796:110321942:110322111:110323339:110323436,110303626:110303814:110321942:110322111:110323339:110323436,	110321943	110322111	110321941	110321941	Splice_Site	A	T	.
SKCM	TCGA-EE-A2GI-06	POLM	ENST00000430942.1,ENST00000492605.1,ENST00000492312.1,ENST00000458246.1,ENST00000335195.6,ENST00000242248.5,ENST00000395831.3	chr7	44119235:44119340:44119459:44119558:44120331:44120515,	44119460	44119558	44119559	44119559	Splice_Site	C	G	.
SKCM	TCGA-D3-A3ML-06	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103355010:103355118:103356006:103356060:103363680:103363734,	103356007	103356060	103356006	103356006	Splice_Site	C	T	.
SKCM	TCGA-D3-A3ML-06	SFTPB	ENST00000519937.2,ENST00000409383.1,ENST00000393822.3,ENST00000473692.1,ENST00000342375.3,ENST00000428225.1	chr2	85893829:85893865:85894228:85894300:85894801:85894929,	85894229	85894300	85894227	85894227	Splice_Site	A	G	.
SKCM	TCGA-D3-A3ML-06	CPS1	ENST00000479988.1,ENST00000233072.5,ENST00000451903.2,ENST00000430249.2	chr2	211540451:211540564:211541730:211541860:211542610:211543831,	211541731	211541860	211541730	211541730	Splice_Site	G	A	.
SKCM	TCGA-D3-A3ML-06	PDE1C	ENST00000321453.7,ENST00000396184.3,ENST00000396182.2,ENST00000396191.1,ENST00000396189.2	chr7	31920461:31920473:32091165:32091192:32109904:32110007,	32091166	32091192	32091193	32091193	Splice_Site	C	T	.
SKCM	TCGA-EE-A29R-06	MYL4	ENST00000571981.1,ENST00000354968.1,ENST00000570671.1,ENST00000573747.2,ENST00000572316.1,ENST00000393450.1,ENST00000536623.2	chr17	45299097:45299221:45299745:45299823:45300379:45300404,	45299746	45299823	45299745	45299745	Splice_Site	G	A	.
SKCM	TCGA-EE-A29R-06	UPF1	ENST00000600689.1,ENST00000262803.5,ENST00000599848.1,ENST00000596842.1	chr19	18974246:18974421:18974978:18975060:18976097:18976259,	18974979	18975060	18975061	18975061	Splice_Site	G	A	.
SKCM	TCGA-FS-A1Z4-06	DENND6A	ENST00000311128.5	chr3	57649362:57649443:57651849:57651962:57657982:57658025,	57651850	57651962	57651848	57651848	Splice_Site	A	G	.
SKCM	TCGA-D3-A51J-06	CEACAM3	ENST00000357396.3,ENST00000415495.1,ENST00000221999.4	chr19	42314360:42314392:42314869:42314935:42315209:42315591,	42314870	42314935	42314869	42314869	Splice_Site	G	A	.
SKCM	TCGA-D3-A51J-06	ELSPBP1	ENST00000339841.2	chr19	48511907:48511994:48519149:48519296:48522975:48523134,48517427:48517565:48519149:48519296:48522975:48523134,	48519150	48519296	48519297	48519297	Splice_Site	G	A	.
SKCM	TCGA-D3-A51J-06	GSTA4	ENST00000370960.1,ENST00000370963.4,ENST00000370959.1,ENST00000486559.1,ENST00000541324.1,ENST00000477599.1	chr6	52843261:52843390:52847371:52847503:52849261:52849403,	52847372	52847503	52847504	52847504	Splice_Site	C	T	.
SKCM	TCGA-D3-A51J-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971209	21971209	Splice_Site	T	A	.
SKCM	TCGA-D3-A51J-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971209	21971209	Splice_Site	T	A	.
SKCM	TCGA-RP-A694-06	PTPN22	ENST00000538253.1,ENST00000532224.1,ENST00000420377.2,ENST00000359785.5,ENST00000484147.1	chr1	114391161:114391248:114394648:114394726:114397092:114397159,	114394649	114394726	114394648	114394648	Splice_Site	C	T	.
SKCM	TCGA-RP-A694-06	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288047	151288047	Splice_Site	A	G	.
SKCM	TCGA-RP-A694-06	PI4KB	ENST00000489223.2	chr1	151280049:151280277:151288048:151288148:151299746:151299853,	151288049	151288148	151288047	151288047	Splice_Site	A	G	.
SKCM	TCGA-RP-A694-06	GNL3	ENST00000496254.1,ENST00000492349.1,ENST00000479230.1,ENST00000394799.2,ENST00000418458.1,ENST00000474423.1,ENST00000468146.1,ENST00000462550.1	chr3	52720784:52720843:52721261:52721399:52721517:52721631,	52721262	52721399	52721400	52721400	Splice_Site	G	T	.
SKCM	TCGA-RP-A694-06	COL14A1	ENST00000537875.1,ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000498051.2,ENST00000434620.1	chr8	121237326:121237453:121238865:121239005:121239458:121239591,	121238866	121239005	121238865	121238865	Splice_Site	G	A	.
SKCM	TCGA-ER-A19L-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971208	21971208	Splice_Site	C	T	.
SKCM	TCGA-ER-A19L-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971208	21971208	Splice_Site	C	T	.
SKCM	TCGA-ER-A19E-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	T	.
SKCM	TCGA-ER-A19E-06	PLCB4	ENST00000378473.3,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9318654:9318714:9319540:9319684:9343542:9343622,	9319541	9319684	9319685	9319685	Splice_Site	G	A	.
SKCM	TCGA-ER-A3PL-06	ZP3	ENST00000336517.4,ENST00000416245.1,ENST00000394857.3	chr7	76062243:76062347:76062786:76062964:76063354:76063472,	76062787	76062964	76062786	76062786	Splice_Site	G	A	.
SKCM	TCGA-ER-A19W-06	NUBP1	ENST00000573663.1	chr16	10855613:10855716:10861805:10861889:10862903:10863170,10858880:10859001:10861805:10861889:10862903:10863170,	10861806	10861889	10861804	10861804	Splice_Site	A	T	.
SKCM	TCGA-EE-A3AE-06	COL13A1	ENST00000398978.3,ENST00000398971.3,ENST00000479733.1,ENST00000356340.3,ENST00000398974.3,ENST00000398964.3,ENST00000398973.3,ENST00000398972.3	chr10	71655305:71655332:71657230:71657287:71662503:71662611,71655305:71655332:71657230:71657287:71658452:71658518,	71657231	71657287	71657230	71657230	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AE-06	TGM4	ENST00000422219.1	chr3	44926816:44926990:44932094:44932224:44935068:44935187,	44932095	44932224	44932094	44932094	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GE-06	SIGLEC10	ENST00000339313.5,ENST00000356298.5,ENST00000357375.4,ENST00000439889.2	chr19	51917675:51917769:51918077:51918362:51918434:51918613,	51918078	51918362	51918076	51918076	Splice_Site	A	G	.
SKCM	TCGA-EE-A3AA-06	ADCY10	ENST00000367848.1,ENST00000485964.1,ENST00000545172.1,ENST00000367851.4	chr1	167793888:167794093:167798504:167798661:167802224:167802400,	167798505	167798661	167798662	167798662	Splice_Site	C	T	.
SKCM	TCGA-EB-A431-01	NOMO3	ENST00000399336.4,ENST00000575225.1,ENST00000538468.1,ENST00000263012.6	chr16	16355358:16355533:16356930:16357072:16357369:16357501,	16356931	16357072	16357074	16357074	Splice_Site	T	G	.
SKCM	TCGA-FR-A3YO-06	SEC31B	ENST00000484848.1,ENST00000370345.3,ENST00000482456.2,ENST00000479697.1,ENST00000462434.1,ENST00000469546.2	chr10	102256014:102256188:102256891:102257037:102257423:102257550,	102256892	102257037	102256891	102256891	Splice_Site	C	T	.
SKCM	TCGA-FR-A3YO-06	MED17	ENST00000525026.1,ENST00000533133.1,ENST00000251871.3	chr11	93527136:93527201:93528073:93528226:93529575:93529645,	93528074	93528226	93528227	93528227	Splice_Site	G	A	.
SKCM	TCGA-FR-A3YO-06	CCDC62	ENST00000392441.4,ENST00000341952.4,ENST00000253079.6	chr12	123262037:123262230:123265710:123265877:123270265:123270367,	123265711	123265877	123265710	123265710	Splice_Site	G	A	.
SKCM	TCGA-FR-A3YO-06	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231587	230231587	Splice_Site	A	G	.
SKCM	TCGA-FR-A3YO-06	MCTP1	ENST00000506568.4	chr5	94253600:94253678:94259666:94259726:94267657:94267696,94248562:94248681:94259666:94259726:94275787:94275880,	94259667	94259726	94259666	94259666	Splice_Site	C	T	.
SKCM	TCGA-EE-A29D-06	MIDN	ENST00000300952.2,ENST00000591302.1,ENST00000591446.2	chr19	1251620:1251648:1251837:1251900:1254165:1254236,	1251838	1251900	1251902	1251902	Splice_Site	T	C	.
SKCM	TCGA-EE-A29D-06	CPAMD8	ENST00000443236.1	chr19	17091306:17091496:17100452:17100581:17104225:17104396,	17100453	17100581	17100582	17100582	Splice_Site	C	T	.
SKCM	TCGA-EE-A29D-06	RASSF1	ENST00000395117.2,ENST00000357043.2,ENST00000359365.4,ENST00000395126.3,ENST00000327761.3	chr3	50368764:50368880:50368989:50369287:50369480:50369585,	50368990	50369287	50369288	50369288	Splice_Site	C	T	.
SKCM	TCGA-EE-A29D-06	SNX2	ENST00000510372.1,ENST00000505934.1,ENST00000514949.1,ENST00000512394.1,ENST00000379516.2	chr5	122139188:122139308:122143971:122144050:122151590:122151666,	122143972	122144050	122143971	122143971	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZZ-06	KIF5A	ENST00000286452.5,ENST00000455537.2	chr12	57975652:57975735:57976384:57976412:57976883:57976998,	57976385	57976412	57976384	57976384	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZZ-06	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70929804:70929939:70931934:70932011:70932703:70932794,	70931935	70932011	70932012	70932012	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZZ-06	SLC38A11	ENST00000303735.4	chr2	165795959:165796066:165802102:165802237:165809216:165809291,	165802103	165802237	165802238	165802238	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZZ-06	ITGB5	ENST00000481591.1,ENST00000296181.4,ENST00000476988.2	chr3	124527868:124528003:124538585:124538681:124540159:124540305,124536467:124536557:124538585:124538681:124540159:124540305,	124538586	124538681	124538682	124538682	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZZ-06	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3	chr7	23830442:23830565:23854762:23854831:23871754:23872068,	23854763	23854831	23854762	23854762	Splice_Site	G	A	.
SKCM	TCGA-EE-A2A0-06	RAB3IP	ENST00000551641.1	chr12	70150302:70150443:70178499:70178595:70188216:70188294,70172729:70172961:70178499:70178595:70188216:70188294,	70178500	70178595	70178597	70178597	Splice_Site	T	C	.
SKCM	TCGA-D3-A1QA-06	HIF3A	ENST00000600383.1,ENST00000244302.4,ENST00000420102.2,ENST00000377670.4,ENST00000300862.3,ENST00000244303.6,ENST00000291300.4,ENST00000339613.2	chr19	46828791:46828896:46832463:46832735:46834412:46834530,	46832464	46832735	46832463	46832463	Splice_Site	G	A	.
SKCM	TCGA-D3-A1QA-06	HPS4	ENST00000466781.1,ENST00000398145.2,ENST00000398141.1,ENST00000336873.5,ENST00000422379.2,ENST00000485842.1,ENST00000402105.3,ENST00000496385.1	chr22	26864516:26864589:26866684:26866779:26868267:26868384,	26866685	26866779	26866780	26866780	Splice_Site	C	T	.
SKCM	TCGA-EE-A29B-06	WDR72	ENST00000360509.5	chr15	54014998:54015105:54025193:54025358:54051829:54051859,	54025194	54025358	54025359	54025359	Splice_Site	C	T	.
SKCM	TCGA-EE-A29B-06	MTFMT	ENST00000560717.1,ENST00000558460.1,ENST00000220058.4	chr15	65295333:65295594:65297191:65297274:65298450:65298529,	65297192	65297274	65297275	65297275	Splice_Site	C	T	.
SKCM	TCGA-D3-A1Q5-06	SLC37A3	ENST00000485734.1	chr7	140045015:140045063:140045668:140045770:140048425:140048486,140037083:140037149:140045668:140045770:140048425:140048486,	140045669	140045770	140045771	140045771	Splice_Site	C	T	.
SKCM	TCGA-D3-A1QB-06	MITD1	ENST00000422537.2,ENST00000289359.2	chr2	99786999:99787115:99787972:99788109:99790377:99790479,99787805:99787892:99787972:99788109:99790377:99790479,	99787973	99788109	99787972	99787972	Splice_Site	C	A	.
SKCM	TCGA-D3-A1QB-06	CCL20	ENST00000473642.1,ENST00000358813.4,ENST00000409189.3	chr2	228680172:228680284:228681022:228681100:228681777:228682179,	228681023	228681100	228681022	228681022	Splice_Site	G	A	.
SKCM	TCGA-D3-A1QB-06	RUSC2	ENST00000361226.3,ENST00000455600.1	chr9	35558193:35558368:35558458:35558564:35559222:35559269,	35558459	35558564	35558458	35558458	Splice_Site	G	A	.
SKCM	TCGA-ER-A19D-06	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000467852.1,ENST00000489656.1,ENST00000373382.1,ENST00000263559.6	chr10	70922161:70922268:70925797:70925866:70928244:70928288,	70925798	70925866	70925797	70925797	Splice_Site	G	A	.
SKCM	TCGA-ER-A19D-06	RCOR2	ENST00000301459.4	chr11	63680147:63680205:63680341:63680419:63681425:63681641,	63680342	63680419	63680420	63680420	Splice_Site	C	T	.
SKCM	TCGA-ER-A19D-06	AKT3	ENST00000336199.5,ENST00000263826.5,ENST00000366539.1,ENST00000366540.1	chr1	243708811:243708899:243716030:243716245:243727021:243727150,	243716031	243716245	243716030	243716030	Splice_Site	C	T	.
SKCM	TCGA-ER-A19D-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971208	21971208	Splice_Site	C	T	.
SKCM	TCGA-ER-A19D-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971208	21971208	Splice_Site	C	T	.
SKCM	TCGA-ER-A19D-06	COL4A5	ENST00000483338.1,ENST00000328300.6,ENST00000361603.2	chrX	107846193:107846291:107849971:107850122:107858140:107858254,	107849972	107850122	107850123	107850123	Splice_Site	G	A	.
SKCM	TCGA-EE-A29M-06	ACSL5	ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000479936.1,ENST00000354655.4	chr10	114154675:114154860:114158658:114158767:114164268:114164333,	114158659	114158767	114158657	114158657	Splice_Site	A	T	.
SKCM	TCGA-EE-A29M-06	KLF12	ENST00000377666.4	chr13	74518117:74518207:74569126:74569190:74708108:74708394,	74569127	74569190	74569125	74569125	Splice_Site	A	G	.
SKCM	TCGA-EE-A29M-06	TMIGD2	ENST00000595645.1	chr19	4292595:4292882:4294575:4294677:4294771:4294813,	4294576	4294677	4294678	4294678	Splice_Site	C	T	.
SKCM	TCGA-EE-A29M-06	TMIGD2	ENST00000301272.2,ENST00000600114.1	chr19	4292595:4292882:4294563:4294677:4294771:4294813,	4294564	4294677	4294678	4294678	Splice_Site	C	T	.
SKCM	TCGA-EE-A29M-06	SIGLEC10	ENST00000339313.5,ENST00000353836.5,ENST00000356298.5,ENST00000525998.1,ENST00000432469.2	chr19	51919919:51920204:51920335:51920719:51920798:51920965,	51920336	51920719	51920720	51920720	Splice_Site	C	T	.
SKCM	TCGA-EE-A29M-06	RALY	ENST00000493399.1,ENST00000375114.3,ENST00000442805.1	chr20	32661624:32661672:32663679:32663846:32664507:32664621,32661415:32661441:32663679:32663846:32664507:32664621,	32663680	32663846	32663679	32663679	Splice_Site	G	T	.
SKCM	TCGA-EE-A29M-06	GAK	ENST00000511163.1,ENST00000314167.4,ENST00000509566.1,ENST00000510799.1	chr4	845640:845762:853393:853510:858909:859032,	853394	853510	853511	853511	Splice_Site	C	T	.
SKCM	TCGA-EE-A29M-06	HPSE	ENST00000311412.5,ENST00000405413.2,ENST00000512196.1,ENST00000509906.1	chr4	84231874:84232043:84234266:84234440:84240496:84240622,	84234267	84234440	84234441	84234441	Splice_Site	C	T	.
SKCM	TCGA-EE-A29M-06	LEF1	ENST00000265165.1,ENST00000506680.1,ENST00000504950.1	chr4	109000647:109000770:109002741:109002825:109004511:109004569,	109002742	109002825	109002741	109002741	Splice_Site	C	T	.
SKCM	TCGA-EE-A29M-06	DNAH5	ENST00000265104.4	chr5	13777315:13777464:13780937:13781068:13786287:13786460,	13780938	13781068	13781069	13781069	Splice_Site	C	T	.
SKCM	TCGA-EE-A29M-06	RECK	ENST00000479053.1,ENST00000377966.3	chr9	36065573:36065621:36080601:36080635:36083361:36083559,	36080602	36080635	36080601	36080601	Splice_Site	G	A	.
SKCM	TCGA-EE-A29M-06	ASTN2	ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119976636:119977021:120053604:120053792:120176774:120177216,	120053605	120053792	120053793	120053793	Splice_Site	C	T	.
SKCM	TCGA-QB-A6FS-06	CLEC4M	ENST00000248228.4,ENST00000598879.1,ENST00000597522.1,ENST00000357361.2	chr19	7828152:7828198:7828278:7828362:7830523:7830679,7828152:7828198:7828278:7828362:7830070:7830135,	7828279	7828362	7828363	7828363	Splice_Site	G	A	.
SKCM	TCGA-D3-A3C3-06	PAPLN	ENST00000340738.5,ENST00000216658.5,ENST00000555445.1,ENST00000555123.1,ENST00000554301.1,ENST00000427855.1,ENST00000381166.3	chr14	73725976:73726253:73727416:73727537:73727863:73728002,	73727417	73727537	73727416	73727416	Splice_Site	G	A	.
SKCM	TCGA-EE-A29S-06	SLC6A13	ENST00000542272.1	chr12	351779:351920:352844:352979:369016:369223,351779:351920:352844:352979:371954:371982,	352845	352979	352844	352844	Splice_Site	C	T	.
SKCM	TCGA-EE-A29S-06	CLEC7A	ENST00000529761.1,ENST00000304084.8,ENST00000396484.2,ENST00000353231.5	chr12	10271147:10271189:10275843:10275962:10277685:10277772,10271147:10271189:10275843:10275962:10277895:10278047,	10275844	10275962	10275963	10275963	Splice_Site	C	T	.
SKCM	TCGA-EE-A29S-06	SIPA1L1	ENST00000555818.1,ENST00000554874.1,ENST00000381232.3	chr14	72200382:72200529:72201993:72202108:72204960:72205042,72200382:72200529:72201993:72202108:72204957:72205042,	72201994	72202108	72202110	72202110	Splice_Site	T	C	.
SKCM	TCGA-EE-A29S-06	CACNA2D3	ENST00000474759.1,ENST00000468658.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54914822:54914890:54919307:54919353:54919515:54919613,	54919308	54919353	54919307	54919307	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MP-06	CDCA8	ENST00000327331.2,ENST00000373055.1	chr1	38167425:38167490:38168923:38169019:38171112:38171239,	38168924	38169019	38168923	38168923	Splice_Site	G	A	.
SKCM	TCGA-EB-A3Y7-01	POLR3H	ENST00000431534.1,ENST00000355209.4,ENST00000407461.1,ENST00000396504.2	chr22	41928662:41928749:41936702:41936799:41939994:41940125,	41936703	41936799	41936800	41936800	Splice_Site	C	A	.
SKCM	TCGA-EB-A3Y7-01	DNAH7	ENST00000312428.6	chr2	196740398:196740567:196741267:196741423:196746518:196746716,	196741268	196741423	196741424	196741424	Splice_Site	C	T	.
SKCM	TCGA-EB-A3Y7-01	TMEM67	ENST00000323130.3,ENST00000452276.1,ENST00000453321.3,ENST00000521517.1	chr8	94768005:94768094:94770710:94770804:94776069:94776161,	94770711	94770804	94770710	94770710	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZK-06	MICAL2	ENST00000527546.1,ENST00000537344.1	chr11	12265533:12265659:12270730:12270793:12277189:12277297,12261006:12261132:12270730:12270793:12278331:12278456,12261006:12261132:12270730:12270793:12277189:12277297,	12270731	12270793	12270730	12270730	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZK-06	KRT7	ENST00000331817.5,ENST00000552322.1,ENST00000549127.1	chr12	52639273:52639416:52641960:52641995:52642374:52642472,	52641961	52641995	52641960	52641960	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZK-06	NLRP1	ENST00000544378.2,ENST00000262467.5	chr17	5405056:5405192:5421065:5421207:5424200:5424332,	5421066	5421207	5421208	5421208	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZK-06	CPT1C	ENST00000323446.5,ENST00000598259.1,ENST00000354199.5,ENST00000405931.2,ENST00000598396.1,ENST00000392518.4,ENST00000598293.1,ENST00000594587.1	chr19	50200641:50200722:50203940:50204112:50204753:50204760,50200641:50200722:50203940:50204112:50204573:50204653,	50203941	50204112	50203940	50203940	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZK-06	PREX1	ENST00000482556.1,ENST00000396220.1,ENST00000371941.3	chr20	47266533:47266744:47267431:47267593:47267933:47268121,	47267432	47267593	47267430	47267430	Splice_Site	A	C	.
SKCM	TCGA-FS-A1ZK-06	MOV10L1	ENST00000395858.3,ENST00000262794.5,ENST00000545383.1,ENST00000540615.1,ENST00000395843.1	chr22	50572958:50573059:50580509:50580618:50581471:50581650,	50580510	50580618	50580509	50580509	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZK-06	COL23A1	ENST00000390654.3	chr5	177681974:177682027:177683353:177683398:177683866:177683929,	177683354	177683398	177683400	177683400	Splice_Site	T	G	.
SKCM	TCGA-BF-A3DN-01	GHR	ENST00000511135.1,ENST00000357703.3,ENST00000537449.1,ENST00000230882.4	chr5	42699925:42700104:42711308:42711474:42713530:42713621,	42711309	42711474	42711475	42711475	Splice_Site	G	A	.
SKCM	TCGA-EB-A42Y-01	PUM1	ENST00000257075.5,ENST00000373741.4,ENST00000498419.1,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3,ENST00000373742.2,ENST00000424085.2	chr1	31426560:31426828:31437520:31437757:31438828:31439044,	31437521	31437757	31437519	31437519	Splice_Site	A	C	.
SKCM	TCGA-FW-A3R5-06	PNLIP	ENST00000369221.2,ENST00000470562.1	chr10	118306805:118306960:118307871:118307994:118310609:118310744,	118307872	118307994	118307871	118307871	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	CCND2	ENST00000261254.3	chr12	4385229:4385386:4387925:4388085:4398007:4398156,	4387926	4388085	4387925	4387925	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	GLS2	ENST00000476991.1,ENST00000494474.1,ENST00000496006.1,ENST00000424141.2,ENST00000311966.4	chr12	56868638:56868680:56868827:56868894:56869407:56869466,	56868828	56868894	56868895	56868895	Splice_Site	C	T	.
SKCM	TCGA-FW-A3R5-06	GALNT16	ENST00000337827.4	chr14	69814593:69814719:69818747:69818887:69820048:69821183,	69818748	69818887	69818888	69818888	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	IFI27	ENST00000557634.1	chr14	94577271:94577324:94577970:94578119:94581196:94581226,94577107:94577143:94577970:94578119:94581196:94581226,94577107:94577143:94577970:94578119:94582126:94582176,	94577971	94578119	94578120	94578120	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	IFI27	ENST00000554800.1	chr14	94577107:94577143:94578004:94578119:94581196:94581226,94577271:94577324:94578004:94578119:94581196:94581226,94577084:94577107:94578004:94578119:94581196:94581226,	94578005	94578119	94578120	94578120	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	MCTP2	ENST00000456504.1,ENST00000451018.3,ENST00000331706.4,ENST00000543482.1,ENST00000357742.4	chr15	94884041:94884153:94888357:94888393:94899365:94899530,	94888358	94888393	94888394	94888394	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	SLC13A5	ENST00000573648.1	chr17	6590859:6590985:6594097:6594259:6596362:6596481,6589415:6589657:6594097:6594259:6596362:6596481,	6594098	6594259	6594260	6594260	Splice_Site	C	T	.
SKCM	TCGA-FW-A3R5-06	SLC14A2	ENST00000586448.1,ENST00000255226.6	chr18	43223950:43224125:43243749:43243872:43246101:43246184,	43243750	43243872	43243749	43243749	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	CAMSAP3	ENST00000446248.2,ENST00000160298.4	chr19	7675585:7675679:7675762:7675817:7675980:7676054,	7675763	7675817	7675818	7675818	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	MAG	ENST00000361922.4	chr19	35802820:35802920:35803183:35803228:35804192:35804707,	35803184	35803228	35803183	35803183	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	ST6GALNAC5	ENST00000477717.1	chr1	77509888:77510298:77515942:77516050:77528659:77529743,	77515943	77516050	77515942	77515942	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	KIAA1324	ENST00000369939.3,ENST00000527996.1,ENST00000369938.1,ENST00000369936.1,ENST00000529753.1,ENST00000457623.2	chr1	109740095:109740276:109740600:109740697:109741194:109741296,	109740601	109740697	109740600	109740600	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	SLC9C2	ENST00000536496.1,ENST00000367714.3	chr1	173552644:173552761:173556803:173556969:173567042:173567171,	173556804	173556969	173556803	173556803	Splice_Site	C	T	.
SKCM	TCGA-FW-A3R5-06	CR2	ENST00000367057.3,ENST00000367058.3,ENST00000367059.3	chr1	207644341:207644432:207644767:207644844:207646116:207646213,	207644768	207644844	207644767	207644767	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	SPTLC3	ENST00000399002.2	chr20	13090758:13090864:13098152:13098372:13107237:13107364,	13098153	13098372	13098373	13098373	Splice_Site	G	T	.
SKCM	TCGA-FW-A3R5-06	PAXBP1	ENST00000443785.1,ENST00000290178.4,ENST00000497873.1,ENST00000331923.4,ENST00000466846.1	chr21	34120869:34121009:34123227:34123343:34123429:34123529,	34123228	34123343	34123226	34123226	Splice_Site	A	G	.
SKCM	TCGA-FW-A3R5-06	HORMAD2	ENST00000403975.1	chr22	30476999:30477247:30489904:30489992:30494840:30494982,	30489905	30489992	30489904	30489904	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	EPB41L5	ENST00000452780.1,ENST00000443902.2,ENST00000263713.5,ENST00000488691.1	chr2	120918456:120918550:120922411:120922486:120925041:120925083,	120922412	120922486	120922487	120922487	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	ARPP21	ENST00000417925.1,ENST00000458225.1,ENST00000187397.4,ENST00000481854.1	chr3	35758792:35758849:35763096:35763326:35770794:35770828,	35763097	35763326	35763096	35763096	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	ACOX2	ENST00000474098.1,ENST00000459701.2,ENST00000302819.5	chr3	58519784:58519872:58520086:58520249:58520673:58520706,	58520087	58520249	58520251	58520251	Splice_Site	T	A	.
SKCM	TCGA-FW-A3R5-06	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148926997:148927171:148927953:148928166:148930237:148930485,	148927954	148928166	148927953	148927953	Splice_Site	C	T	.
SKCM	TCGA-FW-A3R5-06	FGB	ENST00000497097.1,ENST00000502545.1	chr4	155484189:155484284:155486959:155487151:155487640:155487674,	155486960	155487151	155486959	155486959	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36255571:36255692:36257042:36257173:36257555:36257658,	36257043	36257173	36257174	36257174	Splice_Site	C	T	.
SKCM	TCGA-FW-A3R5-06	COL23A1	ENST00000390654.3,ENST00000407622.1	chr5	177684523:177684568:177686721:177686748:177688722:177688749,	177686722	177686748	177686749	177686749	Splice_Site	C	T	.
SKCM	TCGA-FW-A3R5-06	TFEC	ENST00000265440.7,ENST00000484212.1	chr7	115596802:115596847:115614223:115614310:115624315:115624567,	115614224	115614310	115614311	115614311	Splice_Site	C	T	.
SKCM	TCGA-FW-A3R5-06	ADCY8	ENST00000286355.5	chr8	131848522:131848695:131859669:131859759:131861847:131862049,	131859670	131859759	131859669	131859669	Splice_Site	C	T	.
SKCM	TCGA-FW-A3R5-06	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134128852:134128960:134144055:134144190:134145713:134145822,	134144056	134144190	134144055	134144055	Splice_Site	G	A	.
SKCM	TCGA-FW-A3R5-06	POF1B	ENST00000373145.3,ENST00000262753.4	chrX	84558411:84558494:84559348:84559477:84560796:84560916,	84559349	84559477	84559348	84559348	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GS-06	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000347328.5,ENST00000520064.2,ENST00000293618.8,ENST00000518444.1	chr12	50860741:50860903:50867197:50867319:50867781:50867890,	50867198	50867319	50867196	50867196	Splice_Site	A	G	.
SKCM	TCGA-FS-A4F5-06	MAP3K13	ENST00000443863.1,ENST00000424227.1,ENST00000433092.1,ENST00000535426.1,ENST00000265026.3	chr3	185155332:185155418:185161232:185161424:185165576:185165735,	185161233	185161424	185161232	185161232	Splice_Site	G	C	.
SKCM	TCGA-D3-A2JO-06	PMEL	ENST00000449260.2,ENST00000360714.4,ENST00000549564.1,ENST00000536427.1	chr12	56348059:56348133:56349057:56349166:56349247:56349332,	56349058	56349166	56349168	56349168	Splice_Site	T	A	.
SKCM	TCGA-D3-A2JO-06	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49167271:49167451:49167663:49167852:49168172:49168293,	49167664	49167852	49167662	49167662	Splice_Site	A	C	.
SKCM	TCGA-EB-A553-01	ZNF486	ENST00000335117.8	chr19	20278082:20278169:20295164:20295291:20296795:20296891,	20295165	20295291	20295164	20295164	Splice_Site	G	A	.
SKCM	TCGA-EB-A553-01	LAMP5	ENST00000246070.2,ENST00000427562.2	chr20	9496902:9497008:9498686:9498875:9510288:9510374,	9498687	9498875	9498876	9498876	Splice_Site	G	A	.
SKCM	TCGA-EE-A3J4-06	RAN	ENST00000541630.1	chr12	131356640:131356671:131357380:131357457:131357547:131357673,	131357381	131357457	131357380	131357380	Splice_Site	G	T	.
SKCM	TCGA-EE-A3J4-06	RAN	ENST00000543796.1,ENST00000392369.2,ENST00000392367.3	chr12	131356640:131356671:131357380:131357465:131357547:131357673,131357128:131357174:131357380:131357465:131357547:131357673,	131357381	131357465	131357380	131357380	Splice_Site	G	T	.
SKCM	TCGA-EE-A3J4-06	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000346544.3,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216251411:216251681:216252934:216253024:216256354:216256537,	216252935	216253024	216253025	216253025	Splice_Site	C	T	.
SKCM	TCGA-EE-A2MJ-06	UACA	ENST00000560523.1,ENST00000379983.2,ENST00000322954.6,ENST00000539319.1,ENST00000558308.1,ENST00000560441.1,ENST00000559156.1	chr15	70968831:70968930:70969446:70969479:70970437:70970545,	70969447	70969479	70969480	70969480	Splice_Site	C	T	.
SKCM	TCGA-EE-A2MJ-06	HNRNPL	ENST00000601047.1,ENST00000600873.1,ENST00000598985.1,ENST00000388749.3	chr19	39336492:39336730:39337955:39338074:39342935:39342965,	39337956	39338074	39338075	39338075	Splice_Site	C	T	.
SKCM	TCGA-EE-A2MJ-06	ROR1	ENST00000371079.1	chr1	64239713:64240179:64474976:64475048:64515362:64515650,	64474977	64475048	64474976	64474976	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MJ-06	CR2	ENST00000367057.3,ENST00000367058.3,ENST00000367059.3	chr1	207644341:207644432:207644767:207644844:207646116:207646213,	207644768	207644844	207644767	207644767	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MJ-06	EXO1	ENST00000423131.1	chr1	242015593:242015713:242016659:242016783:242020646:242020784,242013793:242013888:242016659:242016783:242020646:242020784,	242016660	242016783	242016659	242016659	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MJ-06	TAGAP	ENST00000338313.5,ENST00000367066.3	chr6	159462385:159462547:159463109:159463276:159464620:159464687,	159463110	159463276	159463277	159463277	Splice_Site	C	T	.
SKCM	TCGA-EB-A24D-01	NFATC2IP	ENST00000320805.4	chr16	28963452:28963525:28965885:28966003:28967298:28967379,	28965886	28966003	28966005	28966005	Splice_Site	T	G	.
SKCM	TCGA-EB-A24D-01	FAM120A	ENST00000333936.5,ENST00000277165.6	chr9	96320108:96320292:96323390:96323532:96324489:96324586,96320862:96321000:96323390:96323532:96324489:96324586,	96323391	96323532	96323390	96323390	Splice_Site	G	A	.
SKCM	TCGA-GN-A26D-06	CD99	ENST00000381184.1,ENST00000381192.3,ENST00000381187.3,ENST00000482293.1,ENST00000449611.1,ENST00000482405.2,ENST00000497752.1	chrX	2638396:2638465:2640667:2640715:2641354:2641405,	2640668	2640715	2640667	2640667	Splice_Site	G	T	.
SKCM	TCGA-DA-A3F5-06	CCDC137	ENST00000571916.1	chr17	79634798:79634892:79637259:79637483:79638773:79638856,	79637260	79637483	79637484	79637484	Splice_Site	G	A	.
SKCM	TCGA-DA-A3F5-06	CCDC137	ENST00000575223.1,ENST00000329214.8	chr17	79634798:79634892:79637254:79637483:79638773:79638856,	79637255	79637483	79637484	79637484	Splice_Site	G	A	.
SKCM	TCGA-DA-A3F5-06	BSDC1	ENST00000446293.2,ENST00000341071.7	chr1	32846814:32846869:32849430:32849649:32852379:32852496,	32849431	32849649	32849430	32849430	Splice_Site	C	A	.
SKCM	TCGA-DA-A3F5-06	BSDC1	ENST00000530485.1	chr1	32846814:32846869:32849430:32849598:32852379:32852496,32846814:32846869:32849430:32849598:32859680:32859741,	32849431	32849598	32849430	32849430	Splice_Site	C	A	.
SKCM	TCGA-DA-A3F5-06	BSDC1	ENST00000527163.1	chr1	32846814:32846869:32849430:32849540:32852379:32852496,32846814:32846869:32849430:32849540:32859680:32859741,	32849431	32849540	32849430	32849430	Splice_Site	C	A	.
SKCM	TCGA-DA-A3F5-06	BSDC1	ENST00000474414.1	chr1	32846814:32846869:32849430:32849507:32852379:32852496,	32849431	32849507	32849430	32849430	Splice_Site	C	A	.
SKCM	TCGA-ER-A19M-06	ACSM2B	ENST00000565232.1,ENST00000566384.1,ENST00000569344.1,ENST00000567001.1	chr16	20570629:20570769:20575990:20576175:20587528:20587599,20570629:20570769:20575990:20576175:20586743:20586778,	20575991	20576175	20576177	20576177	Splice_Site	T	A	.
SKCM	TCGA-ER-A19M-06	ATP1B1	ENST00000494797.1,ENST00000499679.3,ENST00000367816.1,ENST00000367813.3,ENST00000367815.4	chr1	169080607:169080736:169094121:169094277:169096461:169096637,	169094122	169094277	169094121	169094121	Splice_Site	G	A	.
SKCM	TCGA-ER-A19M-06	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000521900.1,ENST00000359530.2	chr8	54714358:54714456:54723723:54723777:54727221:54727326,	54723724	54723777	54723722	54723722	Splice_Site	A	T	.
SKCM	TCGA-EE-A181-06	PUS10	ENST00000316752.6,ENST00000407787.1	chr2	61192557:61192619:61194636:61194748:61198657:61198692,	61194637	61194748	61194636	61194636	Splice_Site	C	T	.
SKCM	TCGA-EE-A181-06	PARP12	ENST00000473341.1,ENST00000263549.3,ENST00000496624.1,ENST00000488726.1	chr7	139726003:139726148:139727075:139727206:139728412:139728488,	139727076	139727206	139727207	139727207	Splice_Site	C	T	.
SKCM	TCGA-D3-A5GU-06	BAP1	ENST00000470173.1,ENST00000296288.5,ENST00000471532.1,ENST00000460680.1,ENST00000490917.1	chr3	52440844:52440923:52441414:52441476:52441973:52442063,52441194:52441332:52441414:52441476:52441973:52442063,	52441415	52441476	52441477	52441477	Splice_Site	C	T	.
SKCM	TCGA-FS-A4FC-06	PCDH15	ENST00000395430.1,ENST00000414778.1,ENST00000395433.1,ENST00000395432.2	chr10	55587152:55587308:55591074:55591293:55600079:55600256,	55591075	55591293	55591294	55591294	Splice_Site	C	T	.
SKCM	TCGA-FS-A4FC-06	PRKRA	ENST00000325748.4,ENST00000487082.1,ENST00000432031.2	chr2	179308069:179308111:179309148:179309227:179312231:179312313,	179309149	179309227	179309147	179309147	Splice_Site	A	T	.
SKCM	TCGA-FS-A1ZU-06	LILRB4	ENST00000434286.1	chr19	55175636:55175936:55176249:55176300:55176583:55176631,	55176250	55176300	55176302	55176302	Splice_Site	T	G	.
SKCM	TCGA-FS-A1YW-06	NUMB	ENST00000555238.1,ENST00000555307.1,ENST00000356296.4,ENST00000559312.1,ENST00000454166.4,ENST00000544991.3,ENST00000555394.1,ENST00000554394.1,ENST00000355058.3,ENST00000560335.1	chr14	73763968:73763993:73783097:73783130:73789837:73789912,	73783098	73783130	73783131	73783131	Splice_Site	C	T	.
SKCM	TCGA-FS-A4F9-06	TPP2	ENST00000376065.4	chr13	103301256:103301501:103301757:103301836:103309405:103309475,	103301758	103301836	103301837	103301837	Splice_Site	G	T	.
SKCM	TCGA-EE-A2M6-06	VWF	ENST00000261405.5	chr12	6134745:6134859:6135071:6135212:6138507:6138654,	6135072	6135212	6135213	6135213	Splice_Site	C	T	.
SKCM	TCGA-EE-A20I-06	CAB39L	ENST00000409130.1,ENST00000409308.1,ENST00000425242.1,ENST00000410043.1,ENST00000347776.5,ENST00000355854.4	chr13	49884787:49885129:49906082:49906226:49913812:49913878,	49906083	49906226	49906228	49906228	Splice_Site	T	C	.
SKCM	TCGA-EE-A2GT-06	CDCA5	ENST00000275517.3,ENST00000527430.1,ENST00000479032.2,ENST00000404147.3	chr11	64846824:64847259:64850835:64850871:64850956:64851003,	64850836	64850871	64850834	64850834	Splice_Site	A	C	.
SKCM	TCGA-EE-A2MS-06	CATSPERB	ENST00000256343.3	chr14	92185761:92185822:92189392:92189533:92191423:92191512,	92189393	92189533	92189534	92189534	Splice_Site	C	T	.
SKCM	TCGA-EE-A2MS-06	PLOD1	ENST00000429000.2,ENST00000376369.3,ENST00000485046.1,ENST00000196061.4	chr1	12010413:12010577:12012679:12012792:12014886:12014950,	12012680	12012792	12012793	12012793	Splice_Site	G	T	.
SKCM	TCGA-EE-A2MS-06	ALPL	ENST00000425315.2,ENST00000374832.1,ENST00000374840.3,ENST00000539907.1,ENST00000540617.1	chr1	21890533:21890709:21894596:21894740:21896797:21896867,	21894597	21894740	21894741	21894741	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MS-06	KCNQ4	ENST00000347132.5,ENST00000506017.1,ENST00000443478.3,ENST00000509682.2	chr1	41298685:41298785:41300638:41300770:41303336:41303466,	41300639	41300770	41300771	41300771	Splice_Site	G	C	.
SKCM	TCGA-EE-A2MS-06	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41434795:41434826:41446963:41447140:41450613:41450904,	41446964	41447140	41447141	41447141	Splice_Site	C	T	.
SKCM	TCGA-EE-A2MS-06	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71904347:71904430:71915557:71915726:71925046:71925094,	71915558	71915726	71915728	71915728	Splice_Site	T	A	.
SKCM	TCGA-EE-A3AC-06	GALNT16	ENST00000553471.2,ENST00000553669.1,ENST00000448469.3,ENST00000337827.4,ENST00000555920.1	chr14	69727007:69727184:69787427:69787585:69791408:69791459,	69787428	69787585	69787427	69787427	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AC-06	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27497317:27497475:27499547:27499736:27499874:27499956,	27499548	27499736	27499546	27499546	Splice_Site	A	G	.
SKCM	TCGA-EE-A3AC-06	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42263286	42263286	Splice_Site	T	C	.
SKCM	TCGA-EE-A3AC-06	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000409769.2,ENST00000496205.1,ENST00000461981.1,ENST00000473565.1,ENST00000409403.2	chr2	201718054:201718172:201718625:201718716:201719338:201719418,	201718626	201718716	201718717	201718717	Splice_Site	C	T	.
SKCM	TCGA-EE-A3AC-06	PPEF2	ENST00000511880.3,ENST00000286719.7	chr4	76788465:76788572:76793177:76793320:76794279:76794465,	76793178	76793320	76793176	76793176	Splice_Site	G	A	.
SKCM	TCGA-EE-A29P-06	ZNF208	ENST00000599916.1	chr19	22115759:22116039:22157530:22157609:22170017:22170113,	22157531	22157609	22157610	22157610	Splice_Site	C	T	.
SKCM	TCGA-EE-A29P-06	VSTM1	ENST00000425006.2,ENST00000338372.2,ENST00000366170.2	chr19	54545169:54545207:54545422:54545450:54545530:54545623,	54545423	54545450	54545422	54545422	Splice_Site	C	T	.
SKCM	TCGA-D9-A6E9-06	PDGFB	ENST00000331163.6,ENST00000381551.4	chr22	39621699:39621852:39626088:39626233:39627626:39627832,	39626089	39626233	39626234	39626234	Splice_Site	C	T	.
SKCM	TCGA-D9-A6E9-06	LTBP1	ENST00000498013.1,ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000272273.5,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33518226:33518349:33525517:33525640:33526588:33526711,	33525518	33525640	33525517	33525517	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AB-06	MTHFD1	ENST00000545908.1,ENST00000555252.1,ENST00000216605.8	chr14	64882356:64882457:64884605:64884742:64886531:64886643,	64884606	64884742	64884744	64884744	Splice_Site	T	C	.
SKCM	TCGA-EE-A3AB-06	SERPINF1	ENST00000576406.1,ENST00000254722.4,ENST00000572048.1	chr17	1675165:1675369:1678351:1678494:1679825:1679872,	1678352	1678494	1678351	1678351	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AB-06	COPS3	ENST00000462236.1,ENST00000584216.1,ENST00000417352.1,ENST00000477299.1,ENST00000268717.5	chr17	17174209:17174322:17179348:17179478:17184445:17184474,	17179349	17179478	17179480	17179480	Splice_Site	T	C	.
SKCM	TCGA-EE-A3AB-06	LTBP4	ENST00000597816.1,ENST00000599724.1,ENST00000318809.7	chr19	41120220:41120352:41125251:41125398:41128305:41128310,41120220:41120352:41125251:41125398:41129508:41129538,	41125252	41125398	41125251	41125251	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AB-06	IDNK	ENST00000405990.3,ENST00000376419.4,ENST00000533522.1,ENST00000277124.8,ENST00000530832.1,ENST00000454393.1	chr9	86243787:86243874:86256462:86256506:86258343:86258682,	86256463	86256506	86256507	86256507	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AH-06	PPFIBP1	ENST00000228425.6	chr12	27809548:27809663:27811748:27811781:27813816:27813878,	27811749	27811781	27811782	27811782	Splice_Site	G	A	.
SKCM	TCGA-EE-A3AH-06	ZNF205	ENST00000219091.4,ENST00000414351.1,ENST00000382192.3	chr16	3166427:3166548:3168905:3169016:3169256:3169497,	3168906	3169016	3168905	3168905	Splice_Site	G	A	.
SKCM	TCGA-EB-A5SF-01	CBLC	ENST00000270279.3	chr19	45284463:45284620:45285626:45285748:45293260:45293348,45284571:45284620:45285626:45285748:45287520:45287658,	45285627	45285748	45285749	45285749	Splice_Site	G	C	.
SKCM	TCGA-EB-A5SF-01	CLPTM1	ENST00000587537.1,ENST00000588855.1,ENST00000546079.1,ENST00000541297.2,ENST00000337392.5	chr19	45477803:45477854:45480599:45480717:45488475:45488561,	45480600	45480717	45480719	45480719	Splice_Site	T	C	.
SKCM	TCGA-EB-A5UL-06	F2	ENST00000311907.5	chr11	46749545:46749713:46750213:46750387:46750929:46751003,	46750214	46750387	46750213	46750213	Splice_Site	G	A	.
SKCM	TCGA-EB-A5UL-06	F2	ENST00000530231.1	chr11	46749545:46749713:46750213:46750270:46750929:46751003,	46750214	46750270	46750213	46750213	Splice_Site	G	A	.
SKCM	TCGA-EB-A5UL-06	PRODH2	ENST00000301175.3	chr19	36297331:36297498:36297576:36297732:36297942:36298023,	36297577	36297732	36297576	36297576	Splice_Site	C	T	.
SKCM	TCGA-D3-A1Q3-06	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3	chr10	34690753:34690845:34759012:34759191:34805906:34806087,34739244:34739376:34759012:34759191:34805906:34806087,	34759013	34759191	34759192	34759192	Splice_Site	C	T	.
SKCM	TCGA-EB-A44P-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690801	89690801	Splice_Site	A	G	.
SKCM	TCGA-BF-A3DL-01	RBP5	ENST00000266560.3,ENST00000542784.1	chr12	7276662:7276770:7277224:7277326:7280835:7281014,	7277225	7277326	7277224	7277224	Splice_Site	C	T	.
SKCM	TCGA-EE-A2M5-06	APIP	ENST00000395787.3	chr11	34912050:34912099:34916556:34916657:34937774:34937883,	34916557	34916657	34916658	34916658	Splice_Site	C	T	.
SKCM	TCGA-BF-A1PZ-01	FAM19A5	ENST00000358295.5,ENST00000402357.1	chr22	49042408:49042558:49103528:49103656:49145650:49146220,	49103529	49103656	49103657	49103657	Splice_Site	G	A	.
SKCM	TCGA-EE-A20B-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971208	21971208	Splice_Site	C	A	.
SKCM	TCGA-EE-A20B-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971208	21971208	Splice_Site	C	A	.
SKCM	TCGA-GN-A26C-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16611602	16611602	Splice_Site	G	A	.
SKCM	TCGA-GN-A26C-01	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32370005:32370076:32372286:32372327:32379442:32382705,	32372287	32372327	32372286	32372286	Splice_Site	G	A	.
SKCM	TCGA-GN-A26C-01	PTPRG	ENST00000295874.10	chr3	62188846:62189624:62204524:62204657:62229480:62229572,	62204525	62204657	62204658	62204658	Splice_Site	G	A	.
SKCM	TCGA-D3-A5GO-06	UBE3B	ENST00000539599.1,ENST00000434735.2,ENST00000449510.2,ENST00000280774.5,ENST00000342494.3	chr12	109937437:109937615:109939175:109939339:109940827:109940995,	109939176	109939339	109939175	109939175	Splice_Site	G	A	.
SKCM	TCGA-D3-A5GO-06	IDH1	ENST00000446179.1,ENST00000345146.2,ENST00000415913.1	chr2	209108150:209108328:209110042:209110148:209113092:209113384,	209110043	209110148	209110041	209110041	Splice_Site	A	G	.
SKCM	TCGA-D3-A5GO-06	HCLS1	ENST00000314583.3,ENST00000473883.1,ENST00000428394.2	chr3	121350561:121350829:121350947:121351031:121351178:121351410,	121350948	121351031	121351032	121351032	Splice_Site	C	T	.
SKCM	TCGA-DA-A1I8-06	LZTFL1	ENST00000536047.1,ENST00000411866.1,ENST00000490463.1,ENST00000296135.6,ENST00000418700.1,ENST00000448111.1,ENST00000539217.1	chr3	45872437:45872482:45872564:45872630:45874541:45874613,	45872565	45872630	45872564	45872564	Splice_Site	C	G	.
SKCM	TCGA-EB-A430-01	SGIP1	ENST00000371036.3,ENST00000371039.1	chr1	67154830:67154958:67155872:67155999:67160121:67160187,	67155873	67155999	67155871	67155871	Splice_Site	A	G	.
SKCM	TCGA-EB-A430-01	SOX10	ENST00000396884.2,ENST00000360880.2	chr22	38370050:38370205:38373873:38374142:38379363:38379421,	38373874	38374142	38373873	38373873	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZD-06	HERC2	ENST00000261609.7	chr15	28362158:28362300:28366491:28366575:28369182:28369380,	28366492	28366575	28366576	28366576	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZD-06	PDS5A	ENST00000303538.8	chr4	39874605:39874764:39875908:39876032:39878612:39878773,	39875909	39876032	39876033	39876033	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZD-06	SULT1E1	ENST00000226444.3	chr4	70713415:70713510:70715154:70715281:70719934:70720032,	70715155	70715281	70715154	70715154	Splice_Site	C	T	.
SKCM	TCGA-DA-A1HV-06	KDSR	ENST00000591902.1	chr18	61002489:61002591:61006032:61006116:61011642:61011726,60998883:60999134:61006032:61006116:61011642:61011726,	61006033	61006116	61006117	61006117	Splice_Site	C	T	.
SKCM	TCGA-DA-A1HV-06	ABCG8	ENST00000272286.2	chr2	44078722:44078961:44079492:44079625:44079737:44080007,	44079493	44079625	44079492	44079492	Splice_Site	G	A	.
SKCM	TCGA-DA-A1HV-06	STYXL1	ENST00000248600.1,ENST00000454618.1,ENST00000359697.3,ENST00000451157.1,ENST00000431581.1	chr7	75633075:75633173:75634576:75634722:75643059:75643205,	75634577	75634722	75634723	75634723	Splice_Site	C	T	.
SKCM	TCGA-EE-A3AD-06	TPP1	ENST00000533371.1,ENST00000299427.6	chr11	6637653:6637734:6637891:6638090:6638205:6638384,	6637892	6638090	6638091	6638091	Splice_Site	C	G	.
SKCM	TCGA-EE-A3AD-06	FAM3D	ENST00000489857.1	chr3	58635041:58635062:58641277:58641328:58652302:58652561,	58641278	58641328	58641329	58641329	Splice_Site	C	T	.
SKCM	TCGA-EE-A29X-06	ORC4	ENST00000440042.1,ENST00000392858.1	chr2	148731016:148731093:148733470:148733544:148778201:148778292,148731016:148731093:148733470:148733544:148779016:148779134,148731016:148731093:148733470:148733544:148778176:148778319,	148733471	148733544	148733545	148733545	Splice_Site	C	T	.
SKCM	TCGA-EB-A42Z-01	ZCWPW1	ENST00000398027.2	chr7	100013597:100013720:100013927:100014079:100014688:100014806,100013597:100013717:100013927:100014079:100014688:100014806,	100013928	100014079	100013927	100013927	Splice_Site	C	T	.
SKCM	TCGA-EE-A3J7-06	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000542001.1,ENST00000428017.1,ENST00000541562.1,ENST00000321897.5,ENST00000467717.1	chr6	30883131:30883232:30883522:30883644:30883757:30883824,	30883523	30883644	30883522	30883522	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MT-06	KIAA1217	ENST00000458595.1	chr10	24825702:24825822:24833909:24834032:24834755:24836627,	24833910	24834032	24833908	24833908	Splice_Site	A	C	.
SKCM	TCGA-EE-A2MT-06	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654858	29654858	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MT-06	RASEF	ENST00000376447.3	chr9	85624555:85624671:85627348:85627426:85630719:85630815,	85627349	85627426	85627427	85627427	Splice_Site	C	T	.
SKCM	TCGA-EE-A2MT-06	PTGS1	ENST00000373698.5,ENST00000362012.2	chr9	125148724:125148900:125152476:125152624:125154467:125154933,125148724:125149011:125152476:125152624:125154467:125154933,	125152477	125152624	125152476	125152476	Splice_Site	G	A	.
SKCM	TCGA-D9-A1JW-06	TM9SF4	ENST00000398022.2,ENST00000217315.5	chr20	30746253:30746317:30747794:30747914:30749078:30749168,	30747795	30747914	30747794	30747794	Splice_Site	G	A	.
SKCM	TCGA-D9-A1JW-06	GEN1	ENST00000317402.7,ENST00000381254.2	chr2	17947845:17947956:17950004:17950078:17952462:17952554,	17950005	17950078	17950004	17950004	Splice_Site	G	A	.
SKCM	TCGA-D9-A1JW-06	WRNIP1	ENST00000380769.4,ENST00000380771.4,ENST00000380764.1,ENST00000380773.4	chr6	2783639:2783795:2784557:2784637:2785240:2785979,	2784558	2784637	2784557	2784557	Splice_Site	G	T	.
SKCM	TCGA-D9-A1JW-06	LAMB4	ENST00000475572.1,ENST00000205386.4,ENST00000388781.3,ENST00000388780.3,ENST00000422975.1	chr7	107669487:107669641:107674652:107674791:107677832:107677907,107671389:107671424:107674652:107674791:107677832:107677907,	107674653	107674791	107674792	107674792	Splice_Site	C	T	.
SKCM	TCGA-D9-A1JW-06	CERCAM	ENST00000372842.1,ENST00000463535.1,ENST00000372838.4	chr9	131193537:131193582:131196380:131196508:131196688:131196886,	131196381	131196508	131196510	131196510	Splice_Site	T	C	.
SKCM	TCGA-EE-A29E-06	NMT2	ENST00000540259.1,ENST00000486786.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15151700:15151838:15154794:15154962:15161341:15161384,	15154795	15154962	15154963	15154963	Splice_Site	C	T	.
SKCM	TCGA-EE-A29E-06	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3,ENST00000359586.6	chr10	124385448:124385481:124389355:124389509:124389803:124390006,	124389356	124389509	124389355	124389355	Splice_Site	G	A	.
SKCM	TCGA-EE-A29E-06	SORL1	ENST00000532451.1	chr11	121323088:121323325:121340715:121340832:121348826:121348952,	121340716	121340832	121340715	121340715	Splice_Site	G	A	.
SKCM	TCGA-EE-A29E-06	DIAPH3	ENST00000498416.1,ENST00000400319.1,ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4,ENST00000400320.1,ENST00000465066.1	chr13	60544985:60545294:60548485:60548590:60554928:60554993,	60548486	60548590	60548485	60548485	Splice_Site	C	T	.
SKCM	TCGA-EE-A29E-06	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16043433:16043656:16101672:16101849:16103632:16103758,	16101673	16101849	16101672	16101672	Splice_Site	G	A	.
SKCM	TCGA-EE-A29E-06	DNAH9	ENST00000262442.4,ENST00000454412.2	chr17	11532733:11532901:11535903:11536020:11539950:11540101,	11535904	11536020	11535903	11535903	Splice_Site	G	A	.
SKCM	TCGA-EE-A29E-06	MROH8	ENST00000217333.8,ENST00000417458.1,ENST00000343811.4,ENST00000400441.3	chr20	35737001:35737067:35738658:35738758:35740726:35740849,	35738659	35738758	35738759	35738759	Splice_Site	C	T	.
SKCM	TCGA-EE-A29E-06	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42693416:42693497:42694351:42694550,	42693417	42693497	42693416	42693416	Splice_Site	G	A	.
SKCM	TCGA-EE-A29E-06	CUL4B	ENST00000336592.6,ENST00000404115.3,ENST00000371322.5	chrX	119660495:119660711:119663956:119664109:119666276:119666449,	119663957	119664109	119664110	119664110	Splice_Site	C	T	.
SKCM	TCGA-FS-A1Z0-06	SERPINI1	ENST00000472747.2,ENST00000295777.5,ENST00000446050.2	chr3	167508159:167508390:167510377:167510572:167512407:167512467,	167510378	167510572	167510377	167510377	Splice_Site	G	A	.
SKCM	TCGA-FS-A1Z0-06	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41048561:41048728:41055503:41055612:41055844:41055991,	41055504	41055612	41055614	41055614	Splice_Site	T	G	.
SKCM	TCGA-EE-A2MQ-06	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579310	7579310	Splice_Site	A	G	.
SKCM	TCGA-EE-A2MR-06	RBM19	ENST00000392561.3,ENST00000552386.1,ENST00000545145.2,ENST00000261741.5	chr12	114356196:114356252:114358415:114358495:114362501:114362562,	114358416	114358495	114358414	114358414	Splice_Site	A	G	.
SKCM	TCGA-EE-A2MR-06	SERPINF2	ENST00000450523.2,ENST00000324015.3,ENST00000382061.4	chr17	1650602:1650806:1651891:1652034:1655879:1655957,	1651892	1652034	1651891	1651891	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MR-06	CD53	ENST00000271324.5	chr1	111436948:111437023:111440430:111440514:111441745:111441938,111439280:111439355:111440430:111440514:111441745:111441938,	111440431	111440514	111440430	111440430	Splice_Site	G	A	.
SKCM	TCGA-EE-A2MR-06	COL15A1	ENST00000375001.3	chr9	101767179:101767332:101777698:101777848:101778257:101778401,	101777699	101777848	101777698	101777698	Splice_Site	G	A	.
SKCM	TCGA-EB-A3Y6-01	EPS15	ENST00000371733.3,ENST00000478657.1,ENST00000396122.4,ENST00000371730.2	chr1	51860090:51860119:51864703:51864837:51866589:51866625,	51864704	51864837	51864702	51864702	Splice_Site	A	G	.
SKCM	TCGA-EB-A3Y6-01	HERPUD2	ENST00000438224.1	chr7	35677959:35678082:35707043:35707198:35733793:35734176,	35707044	35707198	35707199	35707199	Splice_Site	C	T	.
SKCM	TCGA-EB-A44O-01	PITPNA	ENST00000576761.1	chr17	1442162:1442246:1451589:1451681:1456297:1456366,1444880:1444934:1451589:1451681:1456297:1456366,	1451590	1451681	1451683	1451683	Splice_Site	T	A	.
SKCM	TCGA-EB-A44O-01	SLC9B2	ENST00000362026.3,ENST00000394785.3,ENST00000503230.1	chr4	103947524:103947748:103949903:103950040:103952856:103952965,	103949904	103950040	103949903	103949903	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GB-06	VSTM4	ENST00000332853.4	chr10	50226587:50227820:50255027:50255089:50256522:50256629,	50255028	50255089	50255027	50255027	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GB-06	ICA1L	ENST00000494560.1,ENST00000438804.1,ENST00000358299.2,ENST00000392237.2	chr2	203680633:203680732:203682140:203682266:203684423:203684622,	203682141	203682266	203682140	203682140	Splice_Site	C	-	.
SKCM	TCGA-EE-A2GB-06	STYXL1	ENST00000248600.1,ENST00000359697.3,ENST00000360591.3,ENST00000438695.1,ENST00000340062.5,ENST00000431581.1	chr7	75625816:75625917:75630207:75630320:75633075:75633173,	75630208	75630320	75630321	75630321	Splice_Site	C	T	.
SKCM	TCGA-ER-A198-06	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19485486:19485598:19488761:19488840:19490752:19490850,	19488762	19488840	19488761	19488761	Splice_Site	G	A	.
SKCM	TCGA-ER-A198-06	MAGI1	ENST00000330909.8	chr3	65342052:65342807:65344738:65344827:65346873:65347012,	65344739	65344827	65344738	65344738	Splice_Site	C	T	.
SKCM	TCGA-D9-A148-06	BSG	ENST00000333511.3,ENST00000571735.1,ENST00000353555.4,ENST00000545507.2,ENST00000346916.4	chr19	581314:581591:582305:582330:582513:582578,	582306	582330	582305	582305	Splice_Site	G	A	.
SKCM	TCGA-GN-A269-01	SLC26A4	ENST00000265715.3	chr7	107332390:107332522:107334847:107334925:107335065:107335161,107330658:107330682:107334847:107334925:107335065:107335161,	107334848	107334925	107334926	107334926	Splice_Site	G	T	.
SKCM	TCGA-GN-A269-01	IL3RA	ENST00000331035.4	chrX	1460658:1460722:1464208:1464327:1467323:1467438,	1464209	1464327	1464208	1464208	Splice_Site	G	A	.
SKCM	TCGA-D3-A51T-06	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19041545:19041691:19046997:19047145:19049195:19049352,	19046998	19047145	19046997	19046997	Splice_Site	G	A	.
SKCM	TCGA-D3-A51T-06	SERPINB4	ENST00000436264.1,ENST00000498496.1,ENST00000356424.6	chr18	61310394:61310451:61310646:61310837:61311442:61311489,	61310647	61310837	61310838	61310838	Splice_Site	C	T	.
SKCM	TCGA-D3-A51T-06	NT5DC2	ENST00000307092.4,ENST00000307076.4,ENST00000422318.2,ENST00000486792.1,ENST00000459839.1	chr3	52562207:52562327:52562461:52562555:52562652:52562708,	52562462	52562555	52562556	52562556	Splice_Site	C	T	.
SKCM	TCGA-D3-A51T-06	NT5DC2	ENST00000489316.1,ENST00000471522.1	chr3	52562207:52562327:52562527:52562555:52562652:52562708,	52562528	52562555	52562556	52562556	Splice_Site	C	T	.
SKCM	TCGA-D3-A51T-06	DAGLB	ENST00000436575.1,ENST00000297056.6	chr7	6472467:6472590:6475992:6476164:6485583:6485735,6474424:6474651:6475992:6476164:6485583:6485735,	6475993	6476164	6476165	6476165	Splice_Site	C	T	.
SKCM	TCGA-FS-A1ZS-06	TOE1	ENST00000495703.1,ENST00000477731.1,ENST00000372090.5,ENST00000471337.1	chr1	45806974:45807015:45807144:45807241:45807620:45807779,	45807145	45807241	45807144	45807144	Splice_Site	G	A	.
SKCM	TCGA-DA-A1I4-06	SLC10A7	ENST00000264986.3,ENST00000335472.7,ENST00000432059.2,ENST00000507030.1,ENST00000394062.3	chr4	147179843:147179989:147204343:147204417:147214080:147214132,	147204344	147204417	147204418	147204418	Splice_Site	C	T	.
SKCM	TCGA-ER-A194-01	XPO4	ENST00000490513.1	chr13	21436855:21436997:21442734:21442840:21476808:21476886,21437107:21437262:21442734:21442840:21476808:21476886,	21442735	21442840	21442841	21442841	Splice_Site	C	A	.
SKCM	TCGA-ER-A194-01	GGA3	ENST00000584243.1,ENST00000582717.1,ENST00000579743.1,ENST00000245541.6,ENST00000537584.2,ENST00000584978.1,ENST00000582486.1,ENST00000537686.1,ENST00000582200.1	chr17	73239597:73239651:73240699:73240798:73242589:73242665,	73240700	73240798	73240699	73240699	Splice_Site	C	T	.
SKCM	TCGA-ER-A194-01	ASPSCR1	ENST00000582355.2,ENST00000583744.1,ENST00000577733.1,ENST00000306729.7,ENST00000581608.1,ENST00000584454.1,ENST00000583142.1,ENST00000585140.1,ENST00000580534.1,ENST00000578361.1,ENST00000306739.4,ENST00000582404.1	chr17	79974351:79974403:79974675:79974745:79974816:79974913,	79974676	79974745	79974675	79974675	Splice_Site	G	A	.
SKCM	TCGA-ER-A194-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
SKCM	TCGA-ER-A194-01	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000498422.1,ENST00000469153.1	chr3	63821976:63822034:63823651:63823738:63824047:63824175,	63823652	63823738	63823651	63823651	Splice_Site	C	T	.
SKCM	TCGA-D3-A2JN-06	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
SKCM	TCGA-D3-A2JN-06	IPPK	ENST00000287996.3	chr9	95397439:95397590:95400282:95400562:95402991:95403064,	95400283	95400562	95400563	95400563	Splice_Site	C	G	.
SKCM	TCGA-EE-A2GO-06	AK7	ENST00000267584.4	chr14	96949335:96949556:96953234:96953393:96954641:96955764,	96953235	96953393	96953234	96953234	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GO-06	SHC4	ENST00000332408.4,ENST00000537958.1,ENST00000557797.1,ENST00000558220.1,ENST00000396535.3	chr15	49149888:49150012:49160014:49160066:49164285:49164339,	49160015	49160066	49160067	49160067	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GO-06	CLCA4	ENST00000370563.3,ENST00000263723.5	chr1	87025614:87025755:87025893:87026041:87029343:87029452,	87025894	87026041	87025893	87025893	Splice_Site	G	A	.
SKCM	TCGA-EE-A2GO-06	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145641072:145641369:145643053:145643194:145647211:145647331,	145643054	145643194	145643195	145643195	Splice_Site	G	A	.
SKCM	TCGA-RP-A695-06	PLXDC2	ENST00000377238.2,ENST00000377242.3,ENST00000377252.4	chr10	20357098:20357168:20432223:20432346:20436712:20436831,	20432224	20432346	20432347	20432347	Splice_Site	G	A	.
SKCM	TCGA-RP-A695-06	GPR158	ENST00000376351.3	chr10	25755579:25755648:25839904:25840014:25861577:25861816,	25839905	25840014	25840015	25840015	Splice_Site	G	A	.
SKCM	TCGA-RP-A695-06	DNTT	ENST00000371174.2,ENST00000419175.1	chr10	98078108:98078283:98079018:98079147:98080374:98080545,	98079019	98079147	98079148	98079148	Splice_Site	G	A	.
SKCM	TCGA-RP-A695-06	CERKL	ENST00000479558.1,ENST00000374969.2,ENST00000452174.1,ENST00000410087.3,ENST00000339098.5,ENST00000374967.2,ENST00000409440.3,ENST00000374970.2	chr2	182412344:182412453:182412548:182412574:182413271:182413331,	182412549	182412574	182412547	182412547	Splice_Site	A	G	.
SKCM	TCGA-BF-A3DM-01	ANO2	ENST00000545860.1,ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5724351:5724463:5744317:5744513:5756892:5756967,	5744318	5744513	5744514	5744514	Splice_Site	C	T	.
SKCM	TCGA-BF-A3DM-01	DPYD	ENST00000370192.3	chr1	97915614:97915779:97981281:97981497:98015115:98015204,	97981282	97981497	97981281	97981281	Splice_Site	C	T	.
SKCM	TCGA-BF-A3DM-01	CDC25B	ENST00000340833.4,ENST00000480816.1,ENST00000439880.2,ENST00000245960.5,ENST00000344256.6,ENST00000467519.1	chr20	3781900:3782035:3782368:3782449:3782570:3782661,	3782369	3782449	3782450	3782450	Splice_Site	G	C	.
SKCM	TCGA-BF-A3DM-01	ANKMY2	ENST00000306999.2,ENST00000447802.1	chr7	16655368:16655529:16664607:16664706:16666664:16666803,	16664608	16664706	16664708	16664708	Splice_Site	T	C	.
SKCM	TCGA-EB-A5UN-06	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36270247	36270247	Splice_Site	G	A	.
SKCM	TCGA-EB-A5UN-06	PPP1R17	ENST00000342032.3	chr7	31732019:31732137:31735082:31735235:31736578:31736731,	31735083	31735235	31735236	31735236	Splice_Site	G	A	.
SKCM	TCGA-EE-A2A5-06	ATRNL1	ENST00000423111.2,ENST00000424738.1,ENST00000355044.3	chr10	117228681:117228839:117278772:117278834:117308967:117309037,	117278773	117278834	117278772	117278772	Splice_Site	G	A	.
SKCM	TCGA-EE-A3JD-06	ESRP2	ENST00000251366.3,ENST00000562724.1,ENST00000569964.1,ENST00000564465.1,ENST00000564382.1,ENST00000473183.2,ENST00000565858.1	chr16	68267718:68267785:68267896:68268010:68269536:68269611,	68267897	68268010	68268011	68268011	Splice_Site	C	T	.
SKCM	TCGA-EE-A3JD-06	OSBPL7	ENST00000392507.3,ENST00000579728.1,ENST00000583167.1,ENST00000007414.3	chr17	45887959:45888038:45888137:45888201:45890631:45890769,	45888138	45888201	45888202	45888202	Splice_Site	C	T	.
SKCM	TCGA-EE-A3JD-06	TRIM37	ENST00000262294.7,ENST00000584889.1,ENST00000376149.3,ENST00000583387.1,ENST00000393066.3,ENST00000580122.1	chr17	57165651:57165768:57168660:57168701:57181653:57181755,	57168661	57168701	57168659	57168659	Splice_Site	A	T	.
SKCM	TCGA-EE-A3JD-06	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74003162:74006624:74007656:74007749:74007852:74007963,	74007657	74007749	74007750	74007750	Splice_Site	C	T	.
SKCM	TCGA-EE-A3JD-06	SPTBN4	ENST00000595535.1,ENST00000338932.3,ENST00000352632.3,ENST00000598249.1,ENST00000344104.3	chr19	40998869:40998961:41000803:41000884:41003395:41003511,	41000804	41000884	41000803	41000803	Splice_Site	G	A	.
SKCM	TCGA-EE-A3JD-06	PPFIA3	ENST00000602716.1,ENST00000602351.1,ENST00000334186.4,ENST00000602655.1,ENST00000421230.2,ENST00000602726.1	chr19	49632636:49632711:49633249:49633324:49633634:49633685,	49633250	49633324	49633325	49633325	Splice_Site	G	T	.
SKCM	TCGA-EE-A3JD-06	SPEN	ENST00000442985.1,ENST00000375759.3	chr1	16235818:16235976:16237595:16237796:16242622:16242774,	16237596	16237796	16237594	16237594	Splice_Site	A	G	.
SKCM	TCGA-EE-A3JD-06	MYH15	ENST00000478998.1,ENST00000273353.3	chr3	108135658:108135777:108139934:108140061:108147338:108147728,	108139935	108140061	108139934	108139934	Splice_Site	C	T	.
SKCM	TCGA-EE-A3JD-06	EXOC1	ENST00000511971.1,ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56758800:56758877:56759717:56759946:56762882:56763066,	56759718	56759946	56759717	56759717	Splice_Site	G	A	.
SKCM	TCGA-EE-A3JD-06	AP3S1	ENST00000316788.7,ENST00000395548.2	chr5	115230783:115230855:115238581:115238689:115249058:115249154,	115238582	115238689	115238691	115238691	Splice_Site	T	C	.
SKCM	TCGA-EE-A3JD-06	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43172670:43172853:43173000:43173161:43173744:43173973,	43173001	43173161	43173000	43173000	Splice_Site	G	A	.
SKCM	TCGA-EE-A3JD-06	CPED1	ENST00000310396.5	chr7	120907268:120907356:120911337:120911484:120935493:120935652,	120911338	120911484	120911337	120911337	Splice_Site	G	A	.
SKCM	TCGA-EE-A3JD-06	DUSP26	ENST00000256261.4,ENST00000523956.1	chr8	33449365:33449730:33451050:33451265:33454812:33455106,	33451051	33451265	33451266	33451266	Splice_Site	C	T	.
SKCM	TCGA-RP-A693-06	CLUAP1	ENST00000573370.1,ENST00000574592.1,ENST00000576634.1,ENST00000341633.5,ENST00000417763.2,ENST00000571025.1	chr16	3558288:3558468:3562382:3562478:3565507:3565551,	3562383	3562478	3562479	3562479	Splice_Site	G	T	.
SKCM	TCGA-RP-A693-06	RUFY4	ENST00000344321.7,ENST00000457754.2,ENST00000441828.2	chr2	218937965:218938109:218938538:218938608:218939815:218940443,	218938539	218938608	218938609	218938609	Splice_Site	G	A	.
SKCM	TCGA-RP-A693-06	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48604560:48604623:48605006:48605069:48605142:48605196,	48605007	48605069	48605070	48605070	Splice_Site	C	T	.
SKCM	TCGA-D3-A3MV-06	MPHOSPH9	ENST00000392425.3,ENST00000536198.1,ENST00000541076.2,ENST00000545556.2,ENST00000606320.1,ENST00000541603.2,ENST00000302349.5	chr12	123645814:123645930:123646661:123646765:123647560:123647583,	123646662	123646765	123646767	123646767	Splice_Site	T	A	.
SKCM	TCGA-D3-A2JL-06	NCSTN	ENST00000368065.4,ENST00000368063.1,ENST00000424645.1,ENST00000392212.4,ENST00000294785.5,ENST00000459963.1	chr1	160321485:160321595:160321843:160321996:160322676:160322781,	160321844	160321996	160321843	160321843	Splice_Site	G	A	.
SKCM	TCGA-GF-A6C8-06	NFATC1	ENST00000542384.1,ENST00000587635.1,ENST00000329101.4,ENST00000427363.2,ENST00000592223.1,ENST00000586434.1,ENST00000545796.1,ENST00000253506.5,ENST00000591814.1,ENST00000318065.5,ENST00000590313.1,ENST00000397790.2	chr18	77211675:77211816:77221310:77221366:77227449:77227582,	77221311	77221366	77221367	77221367	Splice_Site	G	A	.
SKCM	TCGA-GF-A6C8-06	TRPM4	ENST00000595519.1	chr19	49661448:49661516:49671516:49671680:49671809:49671993,	49671517	49671680	49671516	49671516	Splice_Site	G	A	.
SKCM	TCGA-GF-A6C8-06	TTN	ENST00000359218.5	chr2	179617850:179617907:179622268:179622643:179623710:179623899,	179622269	179622643	179622644	179622644	Splice_Site	C	T	.
SKCM	TCGA-EE-A3JE-06	EPS8L1	ENST00000587786.1	chr19	55587775:55587829:55589455:55589496:55590366:55590425,55587775:55587829:55589455:55589496:55591057:55591219,	55589456	55589496	55589497	55589497	Splice_Site	G	A	.
SKCM	TCGA-FS-A1ZN-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589664	67589664	Splice_Site	T	G	.
SKCM	TCGA-D9-A4Z6-06	ITGB6	ENST00000409872.1,ENST00000283249.2,ENST00000409967.2	chr2	161051879:161052126:161052726:161052931:161056513:161056534,161051879:161052126:161052726:161052931:161055689:161055769,	161052727	161052931	161052932	161052932	Splice_Site	C	T	.
SKCM	TCGA-D9-A4Z6-06	ITGB6	ENST00000409583.1	chr2	161051879:161052126:161052899:161052931:161055689:161055769,	161052900	161052931	161052932	161052932	Splice_Site	C	T	.
SKCM	TCGA-EE-A2GC-06	LLGL2	ENST00000375227.4,ENST00000392550.3,ENST00000167462.5	chr17	73521869:73521906:73539477:73539582:73552126:73552170,	73539478	73539582	73539582	73539583	Splice_Site	-	GT	p.K25_splice
SKCM	TCGA-Z2-AA3S-06	OBSCN	ENST00000570156.2,ENST00000359599.6	chr1	228451816:228452092:228456230:228456506:228459625:228459922,	228456231	228456506	228456506	228456507	Splice_Site	-	GT	p.S1897_splice
SKCM	TCGA-D3-A8GD-06	WDR19	ENST00000512095.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3	chr4	39219602:39219725:39226503:39226653:39229829:39229977,	39226504	39226653	39226502	39226504	Splice_Site	AGA	-	p.E493_splice
SKCM	TCGA-EE-A2GJ-06	SNAP91	ENST00000439399.2,ENST00000519779.1,ENST00000437520.1,ENST00000520213.1,ENST00000518312.1,ENST00000369694.2,ENST00000521616.1,ENST00000428679.2,ENST00000521485.1,ENST00000521931.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1	chr6	84368717:84368811:84371220:84371323:84372065:84372141,	84371221	84371323	84371317	84371324	Splice_Site	TCATAACC	-	p.117_splice
SKCM	TCGA-EB-A3Y7-01	CD44	ENST00000434472.2,ENST00000527889.1,ENST00000525211.1,ENST00000531873.1,ENST00000360158.4,ENST00000433354.2,ENST00000525209.1,ENST00000526000.1,ENST00000442151.2,ENST00000415148.2,ENST00000428726.2,ENST00000449691.2,ENST00000437706.2,ENST00000263398.6,ENST00000433892.2,ENST00000279452.6,ENST00000528455.1,ENST00000352818.4,ENST00000531118.1	chr11	35201904:35201954:35208378:35208447:35211381:35211519,	35208379	35208447	35208378	35208396	Splice_Site	GCTCCACCTGAAGAAGATT	-	p.APPEEDC123_splice
SKCM	TCGA-EB-A430-01	CDK17	ENST00000553042.1,ENST00000543119.2,ENST00000261211.3,ENST00000542666.1	chr12	96683035:96683065:96688776:96688900:96691047:96691110,	96688777	96688900	96688890	96688901	Splice_Site	TACAGAAACAGC	-	p.292_splice
SKCM	TCGA-DA-A3F5-06	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830871	13830886	Splice_Site	GCGTGATGTAACATCT	-	p.R1961_splice
STAD	TCGA-D7-A6EZ-01	WDR33	ENST00000322313.4	chr2	128466250:128466466:128467063:128467156:128467266:128467430,	128467064	128467156	128467158	128467158	Splice_Site	T	A	.
STAD	TCGA-RD-A7BS-01	MAP2K7	ENST00000397979.3,ENST00000468058.1,ENST00000545011.1,ENST00000397983.3	chr19	7975983:7976044:7976134:7976215:7976320:7976463,	7976135	7976215	7976134	7976134	Splice_Site	G	A	.
STAD	TCGA-VQ-A8DT-01	GRIA2	ENST00000323661.6	chr4	158281047:158281295:158282689:158282804:158283950:158283973,158282161:158282276:158282689:158282804:158283950:158283973,	158282690	158282804	158282688	158282688	Splice_Site	A	C	.
STAD	TCGA-IN-A6RL-01	MATR3	ENST00000511978.1	chr5	138654596:138654722:138655022:138655190:138657586:138657683,138651849:138651877:138655022:138655190:138657586:138657683,	138655023	138655190	138655022	138655022	Splice_Site	G	C	.
STAD	TCGA-KB-A93J-01	GZF1	ENST00000377051.2,ENST00000338121.5	chr20	23345855:23346384:23347639:23347734:23349398:23349544,	23347640	23347734	23347736	23347739	Splice_Site	TAAA	-	.
STAD	TCGA-KB-A93J-01	BUD31	ENST00000222969.5,ENST00000403633.2,ENST00000496696.1	chr7	99008679:99008809:99013760:99013883:99015051:99015218,	99013761	99013883	99013885	99013886	Splice_Site	-	A	.
STAD	TCGA-KB-A93J-01	CFH	ENST00000367429.4	chr1	196706604:196706790:196709748:196709922:196711004:196711079,	196709749	196709922	196709923	196709923	Splice_Site	G	A	.
STAD	TCGA-RD-A8N2-01	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088408	10088408	Splice_Site	G	T	.
STAD	TCGA-MX-A5UJ-01	PDZRN3	ENST00000263666.4,ENST00000479530.1,ENST00000462146.2,ENST00000535920.1,ENST00000492909.1,ENST00000494559.1,ENST00000466780.1,ENST00000466348.1	chr3	73434848:73434936:73437118:73437220:73438966:73439029,	73437119	73437220	73437221	73437222	Splice_Site	-	T	.
STAD	TCGA-MX-A5UJ-01	CSNK1G3	ENST00000345990.4,ENST00000521364.1,ENST00000512718.3,ENST00000511130.2,ENST00000395412.1,ENST00000510842.2,ENST00000360683.2	chr5	122940417:122940524:122941032:122941056:122950035:122950149,	122941033	122941056	122941058	122941058	Splice_Site	T	C	.
STAD	TCGA-MX-A5UJ-01	MDH1B	ENST00000374412.3,ENST00000449792.1,ENST00000454776.2	chr2	207615657:207615799:207619732:207620229:207621621:207621764,	207619733	207620229	207620231	207620231	Splice_Site	T	C	.
STAD	TCGA-MX-A5UJ-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232870:26232993:26233194:26233314:26235466:26235478,	26233195	26233314	26233316	26233316	Splice_Site	T	C	.
STAD	TCGA-VQ-A8DL-01	GZF1	ENST00000377051.2,ENST00000338121.5	chr20	23345855:23346384:23347639:23347734:23349398:23349544,	23347640	23347734	23347736	23347739	Splice_Site	TAAA	-	.
STAD	TCGA-VQ-A8DL-01	SSBP1	ENST00000489378.1,ENST00000465582.1	chr7	141438200:141438303:141438923:141438990:141441968:141442029,141438208:141438375:141438923:141438990:141441968:141442029,141438205:141438210:141438923:141438990:141441968:141442029,	141438924	141438990	141438992	141438993	Splice_Site	-	AGTC	.
STAD	TCGA-FP-A8CX-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	36995851:36995906:37000474:37000672:37000918:37000990,	37000475	37000672	37000674	37000674	Splice_Site	T	C	.
STAD	TCGA-B7-A5TI-01	OBSL1	ENST00000373876.1,ENST00000604031.1,ENST00000265317.5,ENST00000456147.1	chr2	220420963:220421014:220421175:220421445:220422544:220422832,	220421176	220421445	220421447	220421447	Splice_Site	T	C	.
STAD	TCGA-B7-A5TI-01	COG7	ENST00000307149.5	chr16	23445956:23446039:23453797:23453966:23456368:23456485,	23453798	23453966	23453967	23453967	Splice_Site	C	A	.
STAD	TCGA-B7-A5TI-01	OLFML2A	ENST00000373580.3	chr9	127539549:127539639:127549253:127549517:127557302:127557410,	127549254	127549517	127549519	127549519	Splice_Site	T	C	.
STAD	TCGA-B7-A5TI-01	CLCN1	ENST00000343257.2	chr7	143047464:143047569:143047660:143047747:143048686:143049176,	143047661	143047747	143047660	143047660	Splice_Site	G	A	.
STAD	TCGA-IN-A6RN-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17169063:17169175:17170213:17170334:17172044:17172202,	17170214	17170334	17170212	17170212	Splice_Site	A	C	.
STAD	TCGA-HF-A5NB-01	HMGB1	ENST00000326004.4,ENST00000341423.5	chr13	31037347:31037489:31037667:31037831:31039932:31040051,	31037668	31037831	31037833	31037834	Splice_Site	-	A	.
STAD	TCGA-HF-A5NB-01	YIPF2	ENST00000590329.1	chr19	11034751:11034868:11036361:11036449:11038305:11038383,11034751:11034868:11036361:11036449:11038474:11038635,11034512:11034675:11036361:11036449:11038305:11038392,	11036362	11036449	11036451	11036452	Splice_Site	-	G	.
STAD	TCGA-HF-A5NB-01	GRB10	ENST00000401949.1,ENST00000357271.5	chr7	50742132:50742355:50771517:50771605:50860920:50861129,50742132:50742355:50771517:50771605:50778571:50778604,50742132:50742355:50771517:50771605:50823583:50823753,50742132:50742355:50771517:50771605:50799968:50800050,	50771518	50771605	50771607	50771608	Splice_Site	-	A	.
STAD	TCGA-HF-A5NB-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1,ENST00000602986.1,ENST00000513376.1,ENST00000503808.1	chr4	57220204:57220377:57220870:57220977:57221347:57221589,	57220871	57220977	57220869	57220869	Splice_Site	A	G	.
STAD	TCGA-HF-A5NB-01	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088408	10088408	Splice_Site	G	T	.
STAD	TCGA-HF-A5NB-01	MYO6	ENST00000430435.1	chr6	76602246:76602407:76604947:76604977:76608089:76608128,76604530:76604557:76604947:76604977:76608089:76608128,76604530:76604557:76604947:76604977:76617321:76617425,	76604948	76604977	76604978	76604978	Splice_Site	G	A	.
STAD	TCGA-HF-A5NB-01	IFT74	ENST00000443698.1,ENST00000429045.2,ENST00000433700.1,ENST00000380062.5	chr9	26990131:26990193:27009017:27009156:27011903:27011966,	27009018	27009156	27009017	27009017	Splice_Site	G	C	.
STAD	TCGA-HF-A5NB-01	BIN1	ENST00000259238.4,ENST00000484253.1,ENST00000393040.3	chr2	127808377:127808488:127808729:127808819:127816586:127816731,127808377:127808488:127808729:127808819:127809830:127809938,127808377:127808488:127808729:127808819:127815048:127815177,	127808730	127808819	127808729	127808729	Splice_Site	C	T	.
STAD	TCGA-HF-A5NB-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197094175:197094321:197097619:197097795:197098316:197098447,	197097620	197097795	197097797	197097797	Splice_Site	T	C	.
STAD	TCGA-HF-A5NB-01	AVEN	ENST00000306730.3,ENST00000558136.1	chr15	34159973:34160056:34163135:34163231:34168125:34168195,	34163136	34163231	34163232	34163232	Splice_Site	C	A	.
STAD	TCGA-HF-A5NB-01	ARAP2	ENST00000303965.4,ENST00000512804.1	chr4	36152521:36152666:36160351:36160486:36160952:36161127,	36160352	36160486	36160350	36160350	Splice_Site	A	G	.
STAD	TCGA-HF-A5NB-01	THBS3	ENST00000368378.3	chr1	155174850:155175107:155175990:155176197:155177588:155177688,	155175991	155176197	155175989	155175989	Splice_Site	A	G	.
STAD	TCGA-R5-A7ZI-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189861123:189861222:189861890:189861944:189862061:189862112,	189861891	189861944	189861890	189861890	Splice_Site	G	T	.
STAD	TCGA-R5-A7ZI-01	FBXO36	ENST00000409992.1	chr2	230840956:230841065:230861526:230861639:230875411:230876996,	230861527	230861639	230861641	230861641	Splice_Site	T	C	.
STAD	TCGA-R5-A7ZI-01	FBXO36	ENST00000373652.3,ENST00000283946.3	chr2	230840956:230841065:230861466:230861639:230875411:230876996,	230861467	230861639	230861641	230861641	Splice_Site	T	C	.
STAD	TCGA-R5-A7ZI-01	MLH1	ENST00000539477.1,ENST00000458205.2,ENST00000432299.1,ENST00000456676.2,ENST00000442249.1,ENST00000536378.1,ENST00000441265.1,ENST00000485889.1,ENST00000231790.2,ENST00000455445.2,ENST00000492474.1	chr3	37042445:37042539:37045891:37045965:37048481:37048554,37042445:37042544:37045891:37045965:37048481:37048554,	37045892	37045965	37045891	37045891	Splice_Site	G	A	.
STAD	TCGA-R5-A7ZI-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000479037.1,ENST00000477441.1,ENST00000389044.4	chr2	230675851:230675920:230678585:230678747:230678948:230679041,	230678586	230678747	230678584	230678584	Splice_Site	A	T	.
STAD	TCGA-D7-A74B-01	LRRC7	ENST00000035383.5,ENST00000310961.5	chr1	70493853:70494054:70501803:70501915:70502126:70502307,	70501804	70501915	70501916	70501916	Splice_Site	G	A	.
STAD	TCGA-VQ-A8P2-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145537422:145537564:145537736:145537829:145537988:145538065,	145537737	145537829	145537735	145537736	Splice_Site	AG	-	.
STAD	TCGA-VQ-A8P2-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111672878:111672994:111678216:111678328:111680024:111680104,	111678217	111678328	111678330	111678331	Splice_Site	-	A	.
STAD	TCGA-VQ-A8P2-01	ZC3H7A	ENST00000571405.1,ENST00000575984.1,ENST00000355758.4,ENST00000396516.2	chr16	11844450:11845362:11846524:11846688:11850092:11850226,	11846525	11846688	11846689	11846689	Splice_Site	C	A	.
STAD	TCGA-VQ-A8P2-01	PSAT1	ENST00000376588.3,ENST00000347159.2	chr9	80916869:80916939:80919650:80919856:80921229:80921402,	80919651	80919856	80919650	80919650	Splice_Site	G	T	.
STAD	TCGA-VQ-A8P2-01	SLAMF7	ENST00000441662.2	chr1	160720111:160720213:160721134:160721238:160721975:160722036,160719827:160719883:160721134:160721238:160721975:160722036,160717983:160718304:160721134:160721238:160721975:160722036,	160721135	160721238	160721134	160721134	Splice_Site	G	A	.
STAD	TCGA-VQ-A8P2-01	BCAP31	ENST00000441714.1,ENST00000458587.2,ENST00000345046.6	chrX	152967461:152967562:152968389:152968513:152969413:152969549,	152968390	152968513	152968388	152968388	Splice_Site	A	G	.
STAD	TCGA-VQ-A8P2-01	EPRS	ENST00000366923.3	chr1	220146579:220146740:220151887:220152061:220152759:220152957,	220151888	220152061	220152063	220152063	Splice_Site	T	C	.
STAD	TCGA-VQ-A8P2-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000562408.1	chr16	28124224:28124371:28132990:28133083:28137009:28137169,28128638:28128783:28132990:28133083:28137009:28137169,	28132991	28133083	28133084	28133084	Splice_Site	C	A	.
STAD	TCGA-VQ-A8P2-01	NDEL1	ENST00000380025.4	chr17	8354098:8354271:8358113:8358205:8363326:8363478,8354098:8354271:8358113:8358205:8370247:8370976,	8358114	8358205	8358207	8358207	Splice_Site	T	C	.
STAD	TCGA-VQ-A8P2-01	LRRCC1	ENST00000360375.3,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86027334:86027510:86027609:86027819:86035647:86035836,	86027610	86027819	86027609	86027609	Splice_Site	G	T	.
STAD	TCGA-VQ-A8P2-01	CDS2	ENST00000379062.4,ENST00000379070.3,ENST00000535100.1,ENST00000460006.1	chr20	5169712:5169832:5170380:5170484:5170747:5171003,	5170381	5170484	5170380	5170380	Splice_Site	G	T	.
STAD	TCGA-VQ-A8P2-01	ATG7	ENST00000451513.1,ENST00000444619.1,ENST00000354449.3,ENST00000423116.1,ENST00000446450.2,ENST00000419112.1,ENST00000451830.1,ENST00000354956.5	chr3	11340159:11340329:11340835:11340890:11348416:11348469,	11340836	11340890	11340892	11340892	Splice_Site	T	C	.
STAD	TCGA-VQ-A8P2-01	AKNAD1	ENST00000369995.3,ENST00000370001.3,ENST00000357393.4	chr1	109377068:109377150:109377550:109377678:109380171:109380328,	109377551	109377678	109377679	109377679	Splice_Site	C	T	.
STAD	TCGA-VQ-A8P2-01	LSM1	ENST00000520286.1,ENST00000311351.4,ENST00000522515.1	chr8	38021127:38021358:38027319:38027435:38029482:38029546,	38027320	38027435	38027436	38027436	Splice_Site	C	T	.
STAD	TCGA-VQ-A8P2-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186094735:186094926:186097209:186097423:186099097:186099232,	186097210	186097423	186097424	186097424	Splice_Site	G	A	.
STAD	TCGA-VQ-A8P2-01	SCAF11	ENST00000465950.1,ENST00000550629.1,ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46316245:46316365:46316718:46316937:46318510:46318571,	46316719	46316937	46316717	46316717	Splice_Site	G	A	.
STAD	TCGA-VQ-A8P2-01	FTSJ3	ENST00000427159.2	chr17	61902184:61902289:61902407:61902523:61902601:61902796,	61902408	61902523	61902524	61902524	Splice_Site	C	A	.
STAD	TCGA-VQ-A8P2-01	ZMYND10	ENST00000360165.3,ENST00000231749.3	chr3	50379240:50379362:50379445:50379571:50379827:50379879,	50379446	50379571	50379573	50379573	Splice_Site	T	C	.
STAD	TCGA-VQ-A8P2-01	SOX30	ENST00000265007.6,ENST00000519442.1	chr5	157065237:157065730:157073644:157073824:157075664:157075904,	157073645	157073824	157073825	157073825	Splice_Site	C	T	.
STAD	TCGA-VQ-A8P2-01	RABGGTA	ENST00000216840.6,ENST00000560127.1,ENST00000558376.1,ENST00000560998.1,ENST00000558534.1,ENST00000399409.3,ENST00000559974.1	chr14	24739565:24739664:24740042:24740153:24740318:24740375,	24740043	24740153	24740154	24740154	Splice_Site	C	T	.
STAD	TCGA-VQ-A8P2-01	DHTKD1	ENST00000263035.4	chr10	12160777:12160917:12162180:12162266:12162785:12165224,	12162181	12162266	12162180	12162180	Splice_Site	G	T	.
STAD	TCGA-VQ-A8P2-01	CAPN12	ENST00000597987.1	chr19	39221807:39221863:39224342:39224421:39224781:39224844,39221807:39221863:39224342:39224421:39224958:39225029,39221807:39221863:39224342:39224421:39225452:39225510,39221807:39221863:39224342:39224421:39226009:39226045,	39224343	39224421	39224422	39224422	Splice_Site	C	A	.
STAD	TCGA-VQ-A8P2-01	CTNND2	ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	10981884:10981958:10988222:10988354:10992662:10992789,	10988223	10988354	10988355	10988355	Splice_Site	C	T	.
STAD	TCGA-VQ-A8P2-01	YIF1A	ENST00000471387.2,ENST00000526497.1,ENST00000376901.4	chr11	66052393:66052437:66052851:66053007:66053171:66053229,	66052852	66053007	66052850	66052850	Splice_Site	A	G	.
STAD	TCGA-VQ-A8P2-01	PCM1	ENST00000519253.1,ENST00000325083.8	chr8	17830181:17830196:17838099:17838264:17840741:17840790,17830181:17830196:17838099:17838264:17842955:17843128,	17838100	17838264	17838265	17838265	Splice_Site	G	T	.
STAD	TCGA-VQ-A8P2-01	CBX8	ENST00000413392.1,ENST00000269385.4,ENST00000485449.1,ENST00000427800.2	chr17	77769192:77769357:77769855:77769922:77770048:77770114,	77769856	77769922	77769924	77769924	Splice_Site	T	C	.
STAD	TCGA-VQ-A8P2-01	HAL	ENST00000261208.3,ENST00000552509.1,ENST00000538703.1,ENST00000546999.1,ENST00000541929.1,ENST00000544080.2	chr12	96381970:96382018:96384170:96384310:96386457:96386565,	96384171	96384310	96384170	96384170	Splice_Site	C	T	.
STAD	TCGA-VQ-A8P2-01	ANP32E	ENST00000369119.3,ENST00000314136.8	chr1	150201404:150201570:150202905:150203028:150208080:150208177,150201404:150201570:150202905:150203028:150204114:150204264,	150202906	150203028	150203029	150203029	Splice_Site	C	T	.
STAD	TCGA-VQ-A8P2-01	SYNC	ENST00000409190.3	chr1	33145960:33147461:33149610:33149690:33149858:33149983,	33149611	33149690	33149691	33149691	Splice_Site	C	A	.
STAD	TCGA-VQ-A8P2-01	COL4A1	ENST00000375820.4,ENST00000543140.1	chr13	110863993:110864020:110864215:110864269:110864763:110864826,	110864216	110864269	110864214	110864214	Splice_Site	A	G	.
STAD	TCGA-VQ-A8P2-01	AKR1A1	ENST00000473038.1,ENST00000351829.4,ENST00000475919.1,ENST00000495913.1,ENST00000497973.1,ENST00000372070.3	chr1	46034605:46034671:46034814:46034901:46035562:46035716,	46034815	46034901	46034902	46034902	Splice_Site	G	T	.
STAD	TCGA-VQ-A8P2-01	ZNF76	ENST00000479226.1,ENST00000440666.2,ENST00000373953.3	chr6	35260657:35260821:35261527:35261692:35262232:35262329,	35261528	35261692	35261693	35261693	Splice_Site	G	A	.
STAD	TCGA-VQ-A91V-01	ANGPT1	ENST00000520052.1,ENST00000521950.1,ENST00000297450.3	chr8	108306163:108306265:108315467:108315595:108334123:108334356,108306163:108306265:108315467:108315595:108334126:108334217,	108315468	108315595	108315466	108315467	Splice_Site	-	C	.
STAD	TCGA-R5-A7ZF-01	TMEM126B	ENST00000531274.1	chr11	85342730:85342852:85345129:85345220:85346710:85346804,85339673:85339732:85345129:85345220:85346710:85346804,	85345130	85345220	85345129	85345129	Splice_Site	G	T	.
STAD	TCGA-R5-A7ZF-01	TMEM126B	ENST00000526822.1	chr11	85342730:85342852:85345129:85345323:85346710:85346804,85339673:85339732:85345129:85345323:85346710:85346804,	85345130	85345323	85345129	85345129	Splice_Site	G	T	.
STAD	TCGA-VQ-A8PE-01	RETSAT	ENST00000263854.6,ENST00000295802.4,ENST00000457495.2,ENST00000429806.1	chr2	85573097:85573217:85576506:85576704:85577162:85577364,	85576507	85576704	85576705	85576705	Splice_Site	C	T	.
STAD	TCGA-IN-A7NU-01	ACBD3	ENST00000366812.5	chr1	226349231:226349390:226352489:226352630:226353559:226353701,	226352490	226352630	226352631	226352631	Splice_Site	C	T	.
STAD	TCGA-SW-A7EA-01	MRRF	ENST00000344641.3,ENST00000546115.1,ENST00000373730.3,ENST00000373728.2,ENST00000470366.1,ENST00000373723.5	chr9	125027740:125028059:125033142:125033354:125042721:125042877,125027740:125027824:125033142:125033354:125042721:125042877,125027204:125027217:125033142:125033354:125042721:125042877,	125033143	125033354	125033141	125033141	Splice_Site	A	T	.
STAD	TCGA-VQ-AA6I-01	GTF3C3	ENST00000263956.3	chr2	197637730:197637877:197639839:197639975:197640733:197640835,	197639840	197639975	197639839	197639839	Splice_Site	C	G	.
STAD	TCGA-VQ-AA6I-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40697749:40697936:40699586:40699768:40702268:40702498,	40699587	40699768	40699585	40699585	Splice_Site	A	C	.
STAD	TCGA-R5-A805-01	IGF2BP3	ENST00000467592.1,ENST00000258729.3	chr7	23357257:23357332:23358756:23358873:23381682:23381808,	23358757	23358873	23358875	23358875	Splice_Site	T	G	.
STAD	TCGA-R5-A805-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711874	89711874	Splice_Site	G	A	.
STAD	TCGA-D7-A6EY-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000301764.7	chr11	61093082:61093180:61094250:61094365:61099014:61099163,61093082:61093180:61094250:61094365:61096834:61097056,	61094251	61094365	61094367	61094368	Splice_Site	-	G	.
STAD	TCGA-D7-A6EY-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128992	46128992	Splice_Site	T	G	.
STAD	TCGA-D7-A6EY-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128992	46128992	Splice_Site	T	G	.
STAD	TCGA-D7-A6EY-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000531848.1,ENST00000396253.3	chr11	18327681:18327894:18330492:18330626:18332287:18332480,	18330493	18330626	18330492	18330492	Splice_Site	C	A	.
STAD	TCGA-D7-A6EY-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000467009.1,ENST00000437809.1,ENST00000361040.5,ENST00000271883.5	chr1	155786002:155786053:155790396:155790447:155791264:155791311,	155790397	155790447	155790395	155790395	Splice_Site	A	C	.
STAD	TCGA-D7-A6EY-01	IGF2BP3	ENST00000467592.1,ENST00000258729.3	chr7	23357257:23357332:23358756:23358873:23381682:23381808,	23358757	23358873	23358755	23358755	Splice_Site	A	G	.
STAD	TCGA-D7-A6EY-01	LRP2BP	ENST00000505916.1	chr4	186298062:186298172:186299234:186299361:186315932:186315993,	186299235	186299361	186299233	186299233	Splice_Site	A	G	.
STAD	TCGA-D7-A6EY-01	KIRREL3	ENST00000525144.2,ENST00000525704.2	chr11	126301313:126301421:126305162:126305198:126306705:126306904,	126305163	126305198	126305200	126305200	Splice_Site	T	C	.
STAD	TCGA-FP-A9TM-01	ZNF626	ENST00000291750.6	chr19	20828489:20828585:20829084:20829211:20844249:20844343,	20829085	20829211	20829212	20829212	Splice_Site	C	A	.
STAD	TCGA-FP-A9TM-01	FANCA	ENST00000563673.1,ENST00000389302.3,ENST00000543736.1,ENST00000534992.1,ENST00000389301.3,ENST00000567621.1,ENST00000566889.1,ENST00000568369.1	chr16	89866012:89866046:89869666:89869749:89871687:89871800,	89869667	89869749	89869665	89869665	Splice_Site	A	G	.
STAD	TCGA-R5-A7ZE-01	BTF3	ENST00000335895.8,ENST00000514505.2,ENST00000380591.3,ENST00000508901.1	chr5	72798415:72798426:72798740:72798942:72800171:72800228,	72798741	72798942	72798943	72798943	Splice_Site	G	C	.
STAD	TCGA-RD-A8N6-01	ZNF341	ENST00000497876.1,ENST00000342427.2,ENST00000375200.1	chr20	32357898:32358098:32369096:32369193:32371537:32371670,	32369097	32369193	32369095	32369095	Splice_Site	A	G	.
STAD	TCGA-KB-A6F7-01	RGPD5	ENST00000393283.1,ENST00000272454.6,ENST00000016946.3	chr2	110581798:110581980:110582063:110582239:110582406:110582530,	110582064	110582239	110582240	110582241	Splice_Site	-	T	.
STAD	TCGA-KB-A6F7-01	CTH	ENST00000346806.2,ENST00000411986.2,ENST00000370938.3	chr1	70897765:70897918:70899510:70899632:70900807:70900860,	70899511	70899632	70899633	70899633	Splice_Site	G	T	.
STAD	TCGA-VQ-A91U-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231101797:231101975:231102927:231103096:231103475:231103642,231101797:231101975:231102927:231103096:231106118:231106202,	231102928	231103096	231103098	231103098	Splice_Site	T	A	.
STAD	TCGA-VQ-AA64-01	NOL4	ENST00000538587.1,ENST00000586314.1,ENST00000261592.5,ENST00000269185.4,ENST00000535475.1,ENST00000589544.1,ENST00000590712.1	chr18	31538202:31538382:31599281:31599565:31673428:31673561,	31599282	31599565	31599567	31599567	Splice_Site	T	G	.
STAD	TCGA-VQ-AA64-01	SLC44A5	ENST00000370859.3,ENST00000370855.5	chr1	75805266:75805315:75862267:75862306:76007119:76007201,	75862268	75862306	75862266	75862266	Splice_Site	A	G	.
STAD	TCGA-VQ-AA64-01	ZNFX1	ENST00000396105.1,ENST00000371752.1	chr20	47862436:47866248:47868063:47868159:47869256:47869367,	47868064	47868159	47868062	47868062	Splice_Site	A	C	.
STAD	TCGA-IN-A6RR-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58110058:58110232:58111307:58111470:58112328:58112489,	58111308	58111470	58111472	58111472	Splice_Site	T	C	.
STAD	TCGA-RD-A8N1-01	RAB6B	ENST00000543906.1	chr3	133560453:133560507:133583427:133583486:133614240:133614297,	133583428	133583486	133583487	133583487	Splice_Site	C	A	.
STAD	TCGA-B7-A5TN-01	PABPC1	ENST00000518716.1,ENST00000318607.5,ENST00000519004.1,ENST00000522387.1,ENST00000517403.1	chr8	101719016:101719033:101719114:101719225:101721360:101721451,	101719115	101719225	101719226	101719226	Splice_Site	C	G	.
STAD	TCGA-RD-A7C1-01	TNR	ENST00000422274.2	chr1	175362915:175363031:175365679:175365943:175372275:175372752,175362915:175363031:175365679:175365943:175375351:175375500,	175365680	175365943	175365679	175365679	Splice_Site	C	T	.
STAD	TCGA-D7-A6EX-01	TBC1D15	ENST00000550746.1	chr12	72287001:72287104:72288104:72288155:72288465:72288502,	72288105	72288155	72288103	72288103	Splice_Site	A	T	.
STAD	TCGA-VQ-A92D-01	TRPM4	ENST00000598502.1,ENST00000427978.2,ENST00000595519.1,ENST00000252826.5	chr19	49675265:49675365:49684605:49684718:49685834:49686012,	49684606	49684718	49684719	49684719	Splice_Site	G	A	.
STAD	TCGA-VQ-AA6G-01	TYRO3	ENST00000568343.1	chr15	41864640:41864762:41865214:41865309:41865505:41865575,	41865215	41865309	41865311	41865311	Splice_Site	T	C	.
STAD	TCGA-VQ-AA6G-01	TYRO3	ENST00000560162.1,ENST00000263798.3,ENST00000559851.1,ENST00000559066.1	chr15	41864640:41864762:41865199:41865309:41865505:41865575,	41865200	41865309	41865311	41865311	Splice_Site	T	C	.
STAD	TCGA-VQ-A91Q-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272470	167272470	Splice_Site	C	A	.
STAD	TCGA-IN-A6RI-01	SMYD2	ENST00000471645.1	chr1	214503510:214503621:214504292:214507651:214510046:214510177,	214504293	214507651	214507652	214507652	Splice_Site	G	T	.
STAD	TCGA-IN-A6RI-01	SMYD2	ENST00000366957.5,ENST00000460580.1	chr1	214503510:214503621:214507542:214507651:214510046:214510177,214505360:214505535:214507542:214507651:214510046:214510177,	214507543	214507651	214507652	214507652	Splice_Site	G	T	.
STAD	TCGA-CD-8536-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46567250:46567326:46568662:46568846:46569366:46569425,	46568663	46568846	46568662	46568662	Splice_Site	C	T	.
STAD	TCGA-CD-8536-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121662412:121662521:121663595:121663789:121668552:121668642,	121663596	121663789	121663791	121663791	Splice_Site	T	C	.
STAD	TCGA-CD-8536-01	MYOM3	ENST00000330966.7,ENST00000374434.3,ENST00000329601.7	chr1	24400649:24400759:24401808:24401965:24402648:24402763,	24401809	24401965	24401807	24401807	Splice_Site	A	G	.
STAD	TCGA-CD-8536-01	NRBP1	ENST00000460499.1,ENST00000379852.3,ENST00000233557.3,ENST00000379863.3	chr2	27663993:27664047:27664133:27664197:27664433:27664489,	27664134	27664197	27664199	27664199	Splice_Site	T	C	.
STAD	TCGA-CD-8536-01	EVL	ENST00000554695.1	chr14	100602241:100602305:100603914:100603981:100607516:100607566,	100603915	100603981	100603983	100603983	Splice_Site	T	C	.
STAD	TCGA-CD-8536-01	CPSF1	ENST00000349769.3	chr8	145619602:145619770:145619858:145620011:145620096:145620238,	145619859	145620011	145619858	145619858	Splice_Site	C	T	.
STAD	TCGA-BR-8589-01	CADM2	ENST00000407528.2,ENST00000405615.2	chr3	86010618:86010797:86028313:86028433:86114754:86114880,	86028314	86028433	86028312	86028312	Splice_Site	A	G	.
STAD	TCGA-BR-8589-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21314574:21314632:21314715:21314823:21319681:21319726,	21314716	21314823	21314715	21314715	Splice_Site	G	A	.
STAD	TCGA-BR-8589-01	SLC12A2	ENST00000262461.2,ENST00000509205.1,ENST00000343225.4	chr5	127477521:127477673:127483313:127483421:127484445:127484569,	127483314	127483421	127483312	127483312	Splice_Site	A	G	.
STAD	TCGA-BR-8589-01	CDKL3	ENST00000609383.1	chr5	133643828:133644157:133657481:133657594:133706688:133706695,133655048:133655188:133657481:133657594:133706688:133706695,133644264:133644418:133657481:133657594:133706688:133706695,	133657482	133657594	133657596	133657596	Splice_Site	T	C	.
STAD	TCGA-BR-8589-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47142946	47142946	Splice_Site	A	G	.
STAD	TCGA-IN-7806-01	PRKCQ	ENST00000539722.1,ENST00000263125.5	chr10	6469982:6470324:6472771:6472900:6483854:6484043,	6472772	6472900	6472771	6472771	Splice_Site	C	A	.
STAD	TCGA-D7-6822-01	YLPM1	ENST00000549293.1	chr14	75287759:75287840:75295915:75296046:75301967:75302150,	75295916	75296046	75296047	75296047	Splice_Site	G	A	.
STAD	TCGA-CD-A4MJ-01	UTRN	ENST00000367526.4,ENST00000460618.1,ENST00000367545.3	chr6	145160359:145160420:145161875:145161968:145167940:145167958,	145161876	145161968	145161969	145161969	Splice_Site	G	A	.
STAD	TCGA-CD-A4MJ-01	SLTM	ENST00000249736.7	chr15	59191001:59191051:59191667:59192082:59193458:59193486,	59191668	59192082	59191666	59191666	Splice_Site	A	G	.
STAD	TCGA-CD-A4MJ-01	SLTM	ENST00000380516.2	chr15	59191001:59191051:59191667:59192136:59193458:59193486,	59191668	59192136	59191666	59191666	Splice_Site	A	G	.
STAD	TCGA-CD-A4MJ-01	VSIG1	ENST00000217957.5,ENST00000415430.3	chrX	107316025:107316062:107316479:107316599:107319306:107319448,	107316480	107316599	107316600	107316600	Splice_Site	G	A	.
STAD	TCGA-CD-A4MJ-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151153343	151153343	Splice_Site	T	C	.
STAD	TCGA-CG-4436-01	LIN9	ENST00000460719.1,ENST00000481685.1,ENST00000366801.1	chr1	226474033:226474159:226475364:226475498:226485419:226485514,	226475365	226475498	226475499	226475499	Splice_Site	C	T	.
STAD	TCGA-CG-4436-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41860456:41860560:41861075:41861220:41862224:41862354,	41861076	41861220	41861222	41861222	Splice_Site	T	C	.
STAD	TCGA-B7-5818-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	T	.
STAD	TCGA-F1-A448-01	BTN2A2	ENST00000469230.1,ENST00000495632.1,ENST00000356709.4,ENST00000490025.1,ENST00000352867.2,ENST00000416795.2,ENST00000482536.1,ENST00000432533.2	chr6	26390330:26390439:26390914:26390935:26391030:26391057,	26390915	26390935	26390936	26390936	Splice_Site	G	A	.
STAD	TCGA-HU-8608-01	CCDC36	ENST00000452691.2,ENST00000366429.2	chr3	49236942:49237006:49249198:49249269:49273980:49274007,	49249199	49249269	49249270	49249271	Splice_Site	-	TAAGT	.
STAD	TCGA-BR-A4QL-01	UBE2Q1	ENST00000292211.4,ENST00000483639.1	chr1	154524246:154524295:154524396:154524455:154524568:154524659,	154524397	154524455	154524457	154524458	Splice_Site	-	GA	.
STAD	TCGA-BR-A4QL-01	STX1A	ENST00000395156.3,ENST00000494245.1,ENST00000470878.1,ENST00000222812.3,ENST00000395154.3,ENST00000395155.3,ENST00000496216.1	chr7	73118092:73118158:73118477:73118586:73118679:73118753,	73118478	73118586	73118587	73118587	Splice_Site	C	T	.
STAD	TCGA-BR-A4QL-01	SYVN1	ENST00000377190.3	chr11	64897200:64897387:64897473:64897647:64897722:64897761,	64897474	64897647	64897648	64897648	Splice_Site	C	T	.
STAD	TCGA-BR-A4QL-01	ELOVL1	ENST00000413844.2	chr1	43830598:43830768:43830856:43831047:43831234:43831294,43830598:43830679:43830856:43831047:43831234:43831292,43830408:43830465:43830856:43831047:43831234:43831294,	43830857	43831047	43831048	43831048	Splice_Site	C	T	.
STAD	TCGA-BR-A4QL-01	ELOVL1	ENST00000496932.1	chr1	43830408:43830465:43830598:43831047:43831234:43831294,	43830599	43831047	43831048	43831048	Splice_Site	C	T	.
STAD	TCGA-BR-A4QL-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93205054:93205210:93206755:93206869:93209975:93210176,	93206756	93206869	93206754	93206754	Splice_Site	A	G	.
STAD	TCGA-BR-A4QL-01	SPPL3	ENST00000543181.1,ENST00000543608.1,ENST00000353487.2,ENST00000540091.1,ENST00000536996.1	chr12	121222276:121222396:121229271:121229360:121248611:121248689,	121229272	121229360	121229361	121229361	Splice_Site	C	A	.
STAD	TCGA-CG-4465-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268825	21268826	Splice_Site	-	G	.
STAD	TCGA-CG-4465-01	APEH	ENST00000296456.5,ENST00000469362.2,ENST00000438011.1	chr3	49719154:49719238:49719319:49719400:49719780:49719869,	49719320	49719400	49719319	49719319	Splice_Site	G	-	.
STAD	TCGA-CG-4465-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32364059:32364197:32366522:32366645:32380904:32381075,	32366523	32366645	32366647	32366648	Splice_Site	-	A	.
STAD	TCGA-CG-4465-01	CMTM6	ENST00000205636.3	chr3	32525230:32525589:32529429:32529528:32533201:32533378,	32529430	32529528	32529529	32529529	Splice_Site	C	A	.
STAD	TCGA-CG-4465-01	ZEB1	ENST00000560721.2	chr10	31749965:31750166:31791275:31791437:31799600:31799803,	31791276	31791437	31791274	31791274	Splice_Site	A	G	.
STAD	TCGA-CG-4465-01	CASP2	ENST00000493642.1	chr7	142997296:142997387:142997472:142997533:143000876:143001026,	142997473	142997533	142997472	142997472	Splice_Site	G	T	.
STAD	TCGA-CG-4465-01	AGRN	ENST00000379370.2	chr1	979713:979819:980540:980657:980738:980903,	980541	980657	980540	980540	Splice_Site	G	T	.
STAD	TCGA-IN-8663-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939672	137939672	Splice_Site	A	C	.
STAD	TCGA-BR-8297-01	PYGL	ENST00000532462.1,ENST00000216392.7,ENST00000544180.2	chr14	51383359:51383452:51383679:51383823:51387258:51387341,	51383680	51383823	51383825	51383825	Splice_Site	T	G	.
STAD	TCGA-BR-8297-01	FAF2	ENST00000261942.6	chr5	175913355:175913490:175915951:175916028:175919194:175919333,	175915952	175916028	175916030	175916030	Splice_Site	T	G	.
STAD	TCGA-BR-8297-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300871	179300871	Splice_Site	C	T	.
STAD	TCGA-BR-4370-01	PIGB	ENST00000539642.1	chr15	55611470:55611611:55621921:55622052:55626064:55626205,	55621922	55622052	55621921	55621922	Splice_Site	-	T	.
STAD	TCGA-BR-4370-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2,ENST00000360084.5	chr13	77799569:77799689:77807290:77807398:77817193:77817295,	77807291	77807398	77807400	77807400	Splice_Site	T	C	.
STAD	TCGA-BR-4370-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579901	2579901	Splice_Site	G	A	.
STAD	TCGA-BR-4370-01	INTS3	ENST00000476843.1,ENST00000435409.2,ENST00000318967.2,ENST00000368670.1,ENST00000481797.1,ENST00000503133.1	chr1	153744271:153744439:153744815:153744916:153745114:153745187,	153744816	153744916	153744815	153744815	Splice_Site	G	A	.
STAD	TCGA-BR-4257-01	LGR4	ENST00000389858.4,ENST00000379214.4	chr11	27400243:27400315:27401817:27401886:27402186:27402258,	27401818	27401886	27401816	27401817	Splice_Site	AC	-	.
STAD	TCGA-BR-4257-01	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101237400:101237567:101243383:101243516:101245638:101245765,	101243384	101243516	101243518	101243518	Splice_Site	C	T	.
STAD	TCGA-BR-4257-01	FAM49B	ENST00000401979.2,ENST00000519824.2,ENST00000519540.1,ENST00000522250.1,ENST00000522941.1,ENST00000522746.1,ENST00000517654.1,ENST00000523509.1,ENST00000519110.1	chr8	130861488:130861615:130863080:130863160:130864407:130864524,	130863081	130863160	130863080	130863080	Splice_Site	C	T	.
STAD	TCGA-BR-4257-01	API5	ENST00000526394.1,ENST00000420461.2,ENST00000529932.1,ENST00000378852.3,ENST00000534600.1,ENST00000531273.1,ENST00000455725.2	chr11	43352057:43352114:43356827:43356904:43357407:43357490,	43356828	43356904	43356827	43356827	Splice_Site	G	T	.
STAD	TCGA-BR-4257-01	EXOC6	ENST00000495132.1,ENST00000443748.2,ENST00000260762.6,ENST00000371552.4,ENST00000371547.4	chr10	94715336:94715471:94733809:94733989:94757230:94757372,	94733810	94733989	94733809	94733809	Splice_Site	G	T	.
STAD	TCGA-BR-8370-01	AK7	ENST00000267584.4	chr14	96887158:96887269:96904171:96904252:96909066:96909155,	96904172	96904252	96904253	96904253	Splice_Site	G	A	.
STAD	TCGA-BR-A4PE-01	DAO	ENST00000547122.1	chr12	109273915:109274000:109278773:109278976:109281225:109281340,109273884:109274000:109278773:109278976:109283244:109283321,	109278774	109278976	109278977	109278977	Splice_Site	G	A	.
STAD	TCGA-FP-7916-01	SIGLEC8	ENST00000321424.3	chr19	51960437:51960485:51960714:51960993:51961187:51961706,	51960715	51960993	51960994	51960994	Splice_Site	C	A	.
STAD	TCGA-BR-8591-01	DDX54	ENST00000314045.7,ENST00000548786.1,ENST00000306014.5,ENST00000550016.1	chr12	113600736:113600850:113600936:113601079:113601871:113601898,	113600937	113601079	113600936	113600936	Splice_Site	C	-	.
STAD	TCGA-BR-8591-01	INTS3	ENST00000476843.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000512605.1,ENST00000481797.1,ENST00000503133.1	chr1	153735203:153735323:153735708:153735838:153736307:153736362,	153735709	153735838	153735839	153735839	Splice_Site	G	A	.
STAD	TCGA-BR-8591-01	TRMT10B	ENST00000297994.3	chr9	37761899:37762114:37763625:37763750:37768072:37768160,37762573:37762682:37763625:37763750:37768072:37768160,	37763626	37763750	37763751	37763751	Splice_Site	G	A	.
STAD	TCGA-BR-8591-01	SMC5	ENST00000361138.5	chr9	72897337:72897499:72901115:72901187:72912881:72913137,	72901116	72901187	72901115	72901115	Splice_Site	G	T	.
STAD	TCGA-BR-8591-01	ROCK2	ENST00000401753.1,ENST00000315872.6	chr2	11348412:11348573:11351806:11351966:11354482:11354589,	11351807	11351966	11351805	11351805	Splice_Site	A	G	.
STAD	TCGA-BR-8591-01	PIGK	ENST00000370813.5,ENST00000370812.3,ENST00000487906.1,ENST00000445065.1	chr1	77557886:77558175:77587959:77588044:77620133:77620306,	77587960	77588044	77587958	77587958	Splice_Site	A	C	.
STAD	TCGA-BR-8591-01	CCDC13	ENST00000479576.1,ENST00000310232.6,ENST00000492806.1	chr3	42788748:42788865:42793427:42793517:42794066:42794209,	42793428	42793517	42793519	42793519	Splice_Site	T	C	.
STAD	TCGA-BR-8591-01	SETD6	ENST00000310682.2,ENST00000418480.1,ENST00000427443.1,ENST00000422445.1,ENST00000219315.4	chr16	58550105:58550247:58550381:58550576:58550711:58550832,	58550382	58550576	58550381	58550381	Splice_Site	G	A	.
STAD	TCGA-BR-8591-01	CACNG7	ENST00000222212.2,ENST00000391767.1	chr19	54418624:54418759:54444723:54444869:54445289:54445640,	54444724	54444869	54444871	54444871	Splice_Site	T	C	.
STAD	TCGA-BR-8591-01	RMDN1	ENST00000519639.1	chr8	87486477:87486587:87487048:87487182:87489522:87489553,87484581:87484708:87487048:87487182:87489522:87489553,	87487049	87487182	87487047	87487047	Splice_Site	A	G	.
STAD	TCGA-BR-8591-01	RMDN1	ENST00000523911.1	chr8	87486477:87486587:87487048:87487143:87489522:87489553,87484581:87484708:87487048:87487143:87489522:87489553,	87487049	87487143	87487047	87487047	Splice_Site	A	G	.
STAD	TCGA-BR-8591-01	WDR27	ENST00000423258.1,ENST00000448612.1,ENST00000333572.6	chr6	170034523:170034621:170036466:170036600:170038634:170038756,	170036467	170036600	170036601	170036601	Splice_Site	C	G	.
STAD	TCGA-D7-8574-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842326:68842470:68842595:68842751:68844099:68844165,	68842596	68842751	68842595	68842595	Splice_Site	G	T	.
STAD	TCGA-D7-6528-01	MACROD2	ENST00000217246.4,ENST00000378058.3,ENST00000310348.4,ENST00000402914.1	chr20	15843449:15843471:15866408:15866456:15913920:15913983,	15866409	15866456	15866408	15866408	Splice_Site	G	C	.
STAD	TCGA-BR-4201-01	TYR	ENST00000263321.5	chr11	88924369:88924586:88960990:88961138:89017940:89018122,	88960991	88961138	88960990	88960990	Splice_Site	G	T	.
STAD	TCGA-BR-4201-01	PICALM	ENST00000532317.1,ENST00000526961.1,ENST00000529760.1,ENST00000530692.1	chr11	85687691:85687725:85689112:85689136:85692171:85692271,	85689113	85689136	85689112	85689112	Splice_Site	C	T	.
STAD	TCGA-D7-A4YT-01	COL9A2	ENST00000482722.1,ENST00000372748.3,ENST00000466267.1	chr1	40768461:40768481:40768802:40768857:40769201:40769348,	40768803	40768857	40768858	40768858	Splice_Site	C	G	.
STAD	TCGA-D7-A4YT-01	IL17RA	ENST00000319363.6	chr22	17565946:17566119:17577951:17577976:17578686:17578833,	17577952	17577976	17577950	17577950	Splice_Site	A	T	.
STAD	TCGA-CG-4305-01	DYNC1I2	ENST00000409773.1,ENST00000397119.3,ENST00000409453.1,ENST00000443458.1	chr2	172549286:172549404:172563056:172563074:172563796:172563887,	172563057	172563074	172563056	172563057	Splice_Site	-	T	.
STAD	TCGA-CG-4305-01	RPAP2	ENST00000610020.1	chr1	92765750:92765796:92767032:92767147:92769533:92769632,	92767033	92767147	92767148	92767148	Splice_Site	G	A	.
STAD	TCGA-CG-4305-01	SLC2A9	ENST00000505104.1,ENST00000309065.3,ENST00000506583.1,ENST00000264784.3	chr4	9909858:9909969:9922008:9922196:9943536:9943669,	9922009	9922196	9922008	9922008	Splice_Site	C	G	.
STAD	TCGA-CG-4305-01	NSUN4	ENST00000471871.1,ENST00000474844.1,ENST00000537428.1,ENST00000536062.1,ENST00000495427.1,ENST00000498008.1,ENST00000307089.3	chr1	46818539:46818700:46826375:46826500:46827241:46827666,	46826376	46826500	46826501	46826501	Splice_Site	G	A	.
STAD	TCGA-CG-4305-01	ADAP2	ENST00000584989.1	chr17	29280305:29280368:29281495:29281573:29283258:29283380,29276304:29276388:29281495:29281573:29283258:29283380,	29281496	29281573	29281495	29281495	Splice_Site	G	A	.
STAD	TCGA-CG-4305-01	JAK2	ENST00000381652.3	chr9	4985939:4986022:5021962:5022213:5029782:5029906,	5021963	5022213	5022214	5022214	Splice_Site	G	A	.
STAD	TCGA-FP-7735-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62394331:62394406:62394519:62394596:62394760:62394825,	62394520	62394596	62394519	62394519	Splice_Site	C	T	.
STAD	TCGA-BR-4255-01	CACNA1C	ENST00000480911.1,ENST00000399637.1,ENST00000399644.1,ENST00000399591.1,ENST00000399641.1,ENST00000399601.1,ENST00000399629.1,ENST00000327702.7	chr12	2706395:2706455:2706602:2706662:2711019:2711126,2705039:2705169:2706602:2706662:2711019:2711126,	2706603	2706662	2706664	2706664	Splice_Site	T	C	.
STAD	TCGA-BR-4362-01	IPO7	ENST00000379719.3	chr11	9446692:9446809:9450086:9450176:9450577:9450743,	9450087	9450176	9450086	9450087	Splice_Site	-	A	.
STAD	TCGA-BR-4362-01	UBE2Q1	ENST00000292211.4,ENST00000483639.1	chr1	154524246:154524295:154524396:154524455:154524568:154524659,	154524397	154524455	154524457	154524458	Splice_Site	-	GA	.
STAD	TCGA-BR-4362-01	PGR	ENST00000534780.1,ENST00000526300.1,ENST00000263463.5	chr11	100962490:100962607:100996737:100996889:100998164:100999801,	100996738	100996889	100996890	100996890	Splice_Site	C	T	.
STAD	TCGA-BR-4362-01	SRL	ENST00000399609.3,ENST00000537996.1,ENST00000572111.1	chr16	4245553:4245787:4247799:4247916:4253166:4253262,	4247800	4247916	4247798	4247798	Splice_Site	A	G	.
STAD	TCGA-BR-4362-01	WDR41	ENST00000513917.1	chr5	76758948:76759051:76785281:76785397:76787994:76788020,76760585:76760634:76785281:76785397:76787994:76788020,76760585:76760634:76785281:76785397:76795151:76795461,	76785282	76785397	76785281	76785281	Splice_Site	C	T	.
STAD	TCGA-BR-4362-01	WDR41	ENST00000511036.1	chr5	76760585:76760634:76785281:76785382:76787994:76788020,	76785282	76785382	76785281	76785281	Splice_Site	C	T	.
STAD	TCGA-BR-4362-01	CCDC149	ENST00000389609.4,ENST00000504487.1,ENST00000324309.4	chr4	24839777:24839894:24854693:24854801:24875302:24875341,	24854694	24854801	24854802	24854802	Splice_Site	C	A	.
STAD	TCGA-BR-4362-01	TMCO6	ENST00000537378.1,ENST00000252100.6,ENST00000510336.1,ENST00000509605.1,ENST00000515265.2,ENST00000394671.3	chr5	140022509:140022626:140023148:140023260:140023364:140023497,	140023149	140023260	140023147	140023147	Splice_Site	A	G	.
STAD	TCGA-BR-4362-01	MICB	ENST00000538442.1,ENST00000252229.6	chr6	31473393:31473648:31473919:31474207:31474798:31475077,	31473920	31474207	31473919	31473919	Splice_Site	G	T	.
STAD	TCGA-HU-A4GC-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576928	7576928	Splice_Site	T	-	.
STAD	TCGA-CG-4438-01	PDLIM1	ENST00000477757.1,ENST00000329399.6	chr10	97006971:97007123:97023620:97023820:97028534:97028619,	97023621	97023820	97023620	97023620	Splice_Site	C	T	.
STAD	TCGA-BR-7707-01	YME1L1	ENST00000326799.3	chr10	27434356:27434519:27436426:27436597:27437834:27437901,	27436427	27436597	27436425	27436425	Splice_Site	A	G	.
STAD	TCGA-BR-7707-01	TTC37	ENST00000503279.1,ENST00000514952.1,ENST00000358746.2	chr5	94865792:94865933:94872520:94872629:94872746:94872811,	94872521	94872629	94872520	94872520	Splice_Site	C	T	.
STAD	TCGA-BR-7707-01	FBXW8	ENST00000455858.2	chr12	117348769:117348962:117365827:117365932:117383168:117383333,	117365828	117365932	117365934	117365934	Splice_Site	T	C	.
STAD	TCGA-BR-7707-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101833092:101833151:101837121:101837170:101838786:101838883,	101837122	101837170	101837172	101837172	Splice_Site	T	C	.
STAD	TCGA-BR-7707-01	ALG1	ENST00000591822.1,ENST00000588623.1,ENST00000544428.1,ENST00000262374.5	chr16	5129748:5129808:5130946:5131057:5132559:5132674,	5130947	5131057	5130946	5130946	Splice_Site	G	A	.
STAD	TCGA-BR-6452-01	GPR155	ENST00000295500.4,ENST00000392552.2,ENST00000392551.2	chr2	175326129:175326220:175326315:175326400:175330512:175330630,	175326316	175326400	175326315	175326315	Splice_Site	C	-	.
STAD	TCGA-BR-6452-01	TCF4	ENST00000563760.1	chr18	52921734:52921931:52924545:52924622:52928696:52928764,	52924546	52924622	52924545	52924545	Splice_Site	C	T	.
STAD	TCGA-BR-6452-01	CHAF1B	ENST00000314103.5	chr21	37775055:37775149:37781058:37781128:37781671:37781763,	37781059	37781128	37781130	37781130	Splice_Site	T	C	.
STAD	TCGA-BR-6452-01	ACSS2	ENST00000477932.1,ENST00000253382.5,ENST00000491533.1,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33508808:33508942:33509132:33509265:33509346:33509403,	33509133	33509265	33509131	33509131	Splice_Site	A	G	.
STAD	TCGA-BR-6452-01	POMGNT1	ENST00000485714.1,ENST00000371992.1,ENST00000535522.1,ENST00000371984.3,ENST00000396420.3,ENST00000371986.3	chr1	46658571:46658630:46658845:46658887:46658976:46659060,	46658846	46658887	46658844	46658844	Splice_Site	A	G	.
STAD	TCGA-BR-6452-01	KANSL1L	ENST00000281772.9	chr2	210894526:210894642:210896144:210896270:210905143:210905251,	210896145	210896270	210896271	210896271	Splice_Site	C	G	.
STAD	TCGA-BR-6452-01	TMEM260	ENST00000539559.2,ENST00000538838.1,ENST00000556079.1,ENST00000557657.1,ENST00000261556.6,ENST00000557626.1,ENST00000556422.1	chr14	57052572:57052630:57070532:57070710:57072287:57072401,	57070533	57070710	57070532	57070532	Splice_Site	G	A	.
STAD	TCGA-BR-6452-01	CPEB2	ENST00000345451.3,ENST00000382395.3	chr4	15008990:15009210:15018811:15018902:15034784:15034835,	15018812	15018902	15018811	15018811	Splice_Site	G	A	.
STAD	TCGA-BR-6452-01	ATXN2L	ENST00000325215.6,ENST00000564304.1,ENST00000382686.4,ENST00000395547.2,ENST00000336783.4,ENST00000340394.8,ENST00000563314.1,ENST00000570200.1	chr16	28843836:28843888:28844137:28844208:28844379:28844675,	28844138	28844208	28844210	28844210	Splice_Site	T	C	.
STAD	TCGA-BR-6452-01	PEX7	ENST00000318471.4,ENST00000541292.1	chr6	137167210:137167319:137187764:137187871:137191027:137191141,	137187765	137187871	137187764	137187764	Splice_Site	G	A	.
STAD	TCGA-BR-6452-01	CDK5RAP3	ENST00000580391.1,ENST00000584991.1,ENST00000584168.1,ENST00000338399.4,ENST00000583697.1,ENST00000585163.1,ENST00000578663.1,ENST00000536708.2,ENST00000580670.2,ENST00000584063.1,ENST00000580287.1	chr17	46056200:46056283:46057958:46058164:46058528:46058700,	46057959	46058164	46057957	46057957	Splice_Site	A	T	.
STAD	TCGA-BR-6452-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50054354:50054471:50055082:50055252:50056872:50057098,	50055083	50055252	50055082	50055082	Splice_Site	G	A	.
STAD	TCGA-BR-6452-01	FANK1	ENST00000368695.1,ENST00000368693.1	chr10	127697622:127697700:127697790:127697835:127697941:127698023,	127697791	127697835	127697837	127697837	Splice_Site	T	C	.
STAD	TCGA-BR-6452-01	IRF2	ENST00000393593.3	chr4	185320068:185320233:185329311:185329429:185339320:185339367,	185329312	185329429	185329430	185329430	Splice_Site	C	T	.
STAD	TCGA-BR-6452-01	SLC4A4	ENST00000264485.5,ENST00000340595.3,ENST00000351898.6	chr4	72425809:72425971:72429509:72429606:72432720:72432790,	72429510	72429606	72429508	72429508	Splice_Site	A	G	.
STAD	TCGA-BR-6452-01	CD109	ENST00000422508.2,ENST00000437994.2,ENST00000287097.5	chr6	74476481:74476583:74476670:74476733:74477777:74477954,	74476671	74476733	74476735	74476735	Splice_Site	T	C	.
STAD	TCGA-BR-6452-01	LONP1	ENST00000585374.1,ENST00000590729.1,ENST00000360614.3,ENST00000590558.1,ENST00000593119.1	chr19	5713144:5713264:5714193:5714282:5719714:5719815,	5714194	5714282	5714193	5714193	Splice_Site	C	G	.
STAD	TCGA-BR-6452-01	SMIM19	ENST00000414154.2	chr8	42396804:42397516:42401611:42401749:42403798:42403923,42396935:42397298:42401611:42401749:42403798:42403923,42396800:42396848:42401611:42401749:42403798:42403923,	42401612	42401749	42401751	42401751	Splice_Site	T	C	.
STAD	TCGA-BR-6452-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000233957.1	chr2	103006518:103006677:103010928:103011087:103012990:103013346,	103010929	103011087	103010928	103010928	Splice_Site	G	A	.
STAD	TCGA-BR-6452-01	SLC35A5	ENST00000484995.1,ENST00000492406.1,ENST00000494706.1,ENST00000261034.2,ENST00000460615.1	chr3	112289386:112289517:112292735:112292803:112299392:112299406,	112292736	112292803	112292735	112292735	Splice_Site	G	T	.
STAD	TCGA-BR-6452-01	SAP30BP	ENST00000577292.1,ENST00000580484.1,ENST00000578288.1,ENST00000578354.1,ENST00000583536.1,ENST00000580322.1,ENST00000582022.1,ENST00000584861.1,ENST00000542343.1,ENST00000579864.1	chr17	73663505:73663558:73664595:73664705:73667895:73667943,	73664596	73664705	73664707	73664707	Splice_Site	T	C	.
STAD	TCGA-BR-6452-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228523491:228523552:228523900:228523971:228524704:228524827,	228523901	228523971	228523973	228523973	Splice_Site	T	C	.
STAD	TCGA-BR-6452-01	ACTL6A	ENST00000487978.1	chr3	179291156:179291257:179292157:179292255:179293190:179293276,	179292158	179292255	179292257	179292257	Splice_Site	T	C	.
STAD	TCGA-BR-6452-01	FN1	ENST00000346544.3,ENST00000323926.6,ENST00000336916.4,ENST00000357009.2,ENST00000345488.5,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216243927:216244040:216245533:216245803:216246934:216247048,	216245534	216245803	216245532	216245532	Splice_Site	A	T	.
STAD	TCGA-BR-6452-01	GABRA2	ENST00000381620.4,ENST00000514090.1,ENST00000506961.1,ENST00000356504.1,ENST00000515082.1,ENST00000510233.1,ENST00000507069.1,ENST00000503806.1,ENST00000510861.1	chr4	46314576:46314733:46334631:46334699:46388090:46388206,	46334632	46334699	46334631	46334631	Splice_Site	C	T	.
STAD	TCGA-BR-6452-01	TIMELESS	ENST00000553532.1,ENST00000229201.4	chr12	56822019:56822189:56822332:56822436:56822666:56822884,	56822333	56822436	56822332	56822332	Splice_Site	C	T	.
STAD	TCGA-BR-6452-01	ENPP1	ENST00000360971.2,ENST00000459624.1,ENST00000513998.1	chr6	132189157:132189266:132190497:132190629:132193209:132193241,	132190498	132190629	132190497	132190497	Splice_Site	G	A	.
STAD	TCGA-BR-6452-01	CPB2	ENST00000439329.3	chr13	46658353:46658478:46661879:46661955:46679070:46679161,	46661880	46661955	46661956	46661956	Splice_Site	C	T	.
STAD	TCGA-BR-6452-01	TSPAN9	ENST00000407263.1,ENST00000537971.1,ENST00000431374.2,ENST00000492305.1,ENST00000011898.5	chr12	3387663:3387778:3388157:3388232:3389547:3389637,	3388158	3388232	3388233	3388233	Splice_Site	G	A	.
STAD	TCGA-BR-6452-01	AARS	ENST00000261772.8,ENST00000564359.1,ENST00000565361.2	chr16	70292938:70293089:70294946:70295060:70296248:70296264,	70294947	70295060	70294945	70294945	Splice_Site	A	G	.
STAD	TCGA-BR-6452-01	SMYD1	ENST00000444564.2	chr2	88367380:88367520:88383834:88384011:88387380:88387594,	88383835	88384011	88384012	88384012	Splice_Site	G	C	.
STAD	TCGA-D7-8572-01	SFMBT1	ENST00000296295.6,ENST00000358080.2,ENST00000394752.3,ENST00000394750.1	chr3	52968828:52968917:52977368:52977609:52988332:52988427,	52977369	52977609	52977610	52977610	Splice_Site	C	A	.
STAD	TCGA-D7-8572-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589663	67589663	Splice_Site	G	A	.
STAD	TCGA-CD-8531-01	RNF8	ENST00000498460.1	chr6	37342395:37342485:37344701:37344809:37358517:37358838,37342395:37342485:37344701:37344809:37348925:37349130,37339287:37339350:37344701:37344809:37358517:37358838,	37344702	37344809	37344811	37344811	Splice_Site	T	G	.
STAD	TCGA-BR-8485-01	AMPH	ENST00000428293.2,ENST00000467580.1,ENST00000325590.5,ENST00000441628.1,ENST00000471913.1	chr7	38433669:38433814:38462020:38462077:38466553:38466586,	38462021	38462077	38462019	38462019	Splice_Site	A	G	.
STAD	TCGA-F1-6874-01	RABEP1	ENST00000341923.6,ENST00000408982.2	chr17	5283658:5283757:5284683:5284800:5286416:5286518,5281471:5281527:5284683:5284800:5286416:5286518,	5284684	5284800	5284683	5284683	Splice_Site	G	-	.
STAD	TCGA-F1-6874-01	RNF213	ENST00000319921.4,ENST00000508628.2,ENST00000559070.1,ENST00000582970.1,ENST00000456466.1	chr17	78272120:78272318:78280051:78280268:78280927:78281001,	78280052	78280268	78280270	78280270	Splice_Site	T	G	.
STAD	TCGA-F1-6874-01	SRPRB	ENST00000466636.1,ENST00000494297.1,ENST00000466490.2,ENST00000481356.1	chr3	133529967:133530043:133534433:133534570:133535721:133535776,	133534434	133534570	133534433	133534433	Splice_Site	G	T	.
STAD	TCGA-F1-6874-01	THRA	ENST00000394121.4,ENST00000578218.1,ENST00000546243.1,ENST00000264637.4,ENST00000584985.1,ENST00000450525.2	chr17	38233123:38233191:38233760:38233861:38240087:38240119,	38233761	38233861	38233862	38233862	Splice_Site	G	A	.
STAD	TCGA-F1-6874-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148454074:148454242:148456395:148456446:148456639:148456730,	148456396	148456446	148456394	148456394	Splice_Site	A	G	.
STAD	TCGA-BR-4267-01	ZNHIT6	ENST00000370574.3,ENST00000431532.2	chr1	86119646:86119781:86123529:86123654:86142918:86142996,	86123530	86123654	86123656	86123656	Splice_Site	T	G	.
STAD	TCGA-D7-8573-01	PCSK5	ENST00000545128.1,ENST00000376767.3,ENST00000376752.4	chr9	78686641:78686814:78710805:78711018:78722166:78722267,	78710806	78711018	78711019	78711019	Splice_Site	G	A	.
STAD	TCGA-D7-A4YY-01	ORM1	ENST00000259396.8,ENST00000477456.1	chr9	117086301:117086368:117087069:117087177:117087328:117087432,	117087070	117087177	117087179	117087179	Splice_Site	T	C	.
STAD	TCGA-D7-A4YY-01	TTC12	ENST00000393020.1,ENST00000464224.1,ENST00000529221.1,ENST00000478125.1,ENST00000527362.1,ENST00000483239.2,ENST00000314756.3,ENST00000494714.1	chr11	113221992:113222021:113222791:113222929:113230084:113230183,	113222792	113222929	113222930	113222930	Splice_Site	G	A	.
STAD	TCGA-HU-A4H4-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42049532:42049694:42052906:42053036:42054255:42054356,	42052907	42053036	42052906	42052906	Splice_Site	G	T	.
STAD	TCGA-HU-A4H4-01	HBS1L	ENST00000367837.5,ENST00000529882.1,ENST00000524715.1	chr6	135323952:135323980:135360710:135360905:135371719:135371759,135323952:135323980:135360710:135360905:135363138:135363264,	135360711	135360905	135360709	135360709	Splice_Site	A	G	.
STAD	TCGA-HU-A4H4-01	SPOCK2	ENST00000463279.2,ENST00000373109.2,ENST00000536168.1,ENST00000317376.4,ENST00000469121.1,ENST00000460053.1	chr10	73822844:73822920:73823935:73823998:73826659:73826878,	73823936	73823998	73823934	73823934	Splice_Site	A	G	.
STAD	TCGA-BR-7196-01	ELMO2	ENST00000290246.6,ENST00000425546.1,ENST00000396391.1,ENST00000439931.2,ENST00000352077.2,ENST00000445496.2,ENST00000372176.1,ENST00000481852.1,ENST00000488853.1,ENST00000467800.1,ENST00000454865.2,ENST00000462491.1	chr20	45003076:45003079:45003174:45003279:45003874:45004009,	45003175	45003279	45003173	45003173	Splice_Site	A	T	.
STAD	TCGA-BR-7196-01	ASCC1	ENST00000342444.4,ENST00000317168.6,ENST00000317126.4,ENST00000394919.1,ENST00000530394.1,ENST00000486689.2,ENST00000394915.3,ENST00000545550.1	chr10	73892814:73892939:73912626:73912746:73921295:73921314,	73912627	73912746	73912747	73912747	Splice_Site	C	G	.
STAD	TCGA-BR-7196-01	PLEKHM2	ENST00000375799.3,ENST00000375793.2,ENST00000477849.1	chr1	16058844:16059024:16059106:16059223:16060291:16060610,	16059107	16059223	16059105	16059105	Splice_Site	A	C	.
STAD	TCGA-CD-A486-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67170421:67170535:67170747:67170918:67171546:67171654,	67170748	67170918	67170746	67170746	Splice_Site	A	G	.
STAD	TCGA-BR-8361-01	DHX32	ENST00000284690.3	chr10	127542529:127542772:127548171:127548544:127555558:127555752,	127548172	127548544	127548546	127548546	Splice_Site	T	C	.
STAD	TCGA-BR-8361-01	SP100	ENST00000264052.5,ENST00000340126.4	chr2	231371017:231371160:231372707:231372746:231375839:231375881,	231372708	231372746	231372706	231372706	Splice_Site	A	G	.
STAD	TCGA-BR-8361-01	DLG3	ENST00000194900.4,ENST00000461646.1,ENST00000374360.3,ENST00000463252.1,ENST00000542398.1,ENST00000374355.3	chrX	69719814:69719899:69720320:69720430:69720747:69720839,	69720321	69720430	69720431	69720431	Splice_Site	G	A	.
STAD	TCGA-BR-8361-01	CLIC2	ENST00000369449.2,ENST00000465553.1,ENST00000491205.1	chrX	154509250:154509357:154528097:154528223:154528348:154528458,	154528098	154528223	154528224	154528224	Splice_Site	C	T	.
STAD	TCGA-BR-8361-01	AZGP1	ENST00000292401.4	chr7	99564890:99564909:99565777:99566053:99569368:99569629,	99565778	99566053	99565777	99565777	Splice_Site	C	T	.
STAD	TCGA-CD-A4MG-01	UBE2Q1	ENST00000292211.4,ENST00000483639.1	chr1	154524246:154524295:154524396:154524455:154524568:154524659,	154524397	154524455	154524457	154524458	Splice_Site	-	GA	.
STAD	TCGA-CD-A4MG-01	NADK	ENST00000492768.1,ENST00000344463.4,ENST00000464373.1,ENST00000460602.1	chr1	1693390:1693474:1696666:1696885:1711343:1711401,1693390:1693474:1696666:1696885:1709727:1709858,	1696667	1696885	1696665	1696665	Splice_Site	A	G	.
STAD	TCGA-CD-A4MG-01	LEMD1	ENST00000367154.1,ENST00000391936.2	chr1	205385359:205385424:205388357:205388480:205389582:205389702,205350512:205350984:205388357:205388480:205389582:205389702,	205388358	205388480	205388357	205388357	Splice_Site	C	T	.
STAD	TCGA-CD-A4MG-01	RPAP1	ENST00000562303.1,ENST00000304330.4	chr15	41812588:41813345:41813935:41814078:41814295:41814448,	41813936	41814078	41813935	41813935	Splice_Site	C	T	.
STAD	TCGA-CD-A4MG-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	154026703:154026883:154027245:154027308:154029290:154029342,	154027246	154027308	154027309	154027309	Splice_Site	C	T	.
STAD	TCGA-CD-A4MG-01	FDFT1	ENST00000525283.1	chr8	11660292:11660440:11667300:11667359:11679258:11679327,	11667301	11667359	11667360	11667360	Splice_Site	G	A	.
STAD	TCGA-CD-A4MG-01	FDFT1	ENST00000529464.1	chr8	11660292:11660440:11667175:11667359:11679258:11679327,	11667176	11667359	11667360	11667360	Splice_Site	G	A	.
STAD	TCGA-CD-A4MG-01	ZDHHC23	ENST00000498275.1,ENST00000330212.3,ENST00000478793.1	chr3	113672546:113673257:113675185:113675353:113677209:113677385,	113675186	113675353	113675184	113675184	Splice_Site	A	G	.
STAD	TCGA-CD-A4MG-01	EIF4E3	ENST00000448225.1,ENST00000425534.3,ENST00000295612.3,ENST00000497838.1,ENST00000469524.1,ENST00000496214.2,ENST00000389826.3,ENST00000421769.2	chr3	71743047:71743092:71745610:71745671:71748764:71748859,	71745611	71745671	71745673	71745673	Splice_Site	T	G	.
STAD	TCGA-CD-A4MG-01	SLX4	ENST00000294008.3	chr16	3650979:3651192:3652118:3652308:3656474:3656699,	3652119	3652308	3652117	3652117	Splice_Site	A	G	.
STAD	TCGA-HU-A4G8-01	APEH	ENST00000296456.5,ENST00000469362.2,ENST00000438011.1	chr3	49719154:49719238:49719319:49719400:49719780:49719869,	49719320	49719400	49719319	49719319	Splice_Site	G	-	.
STAD	TCGA-HU-A4G8-01	TFCP2	ENST00000549867.1,ENST00000257915.5,ENST00000548108.1	chr12	51501018:51501129:51502903:51503056:51504659:51504766,	51502904	51503056	51502902	51502902	Splice_Site	A	G	.
STAD	TCGA-HU-A4G8-01	TEX30	ENST00000376032.4,ENST00000376019.1,ENST00000376021.4	chr13	103418459:103418930:103419622:103419828:103420609:103420661,	103419623	103419828	103419621	103419621	Splice_Site	A	G	.
STAD	TCGA-HU-A4G8-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669173	95669173	Splice_Site	A	G	.
STAD	TCGA-HU-A4G8-01	KCNQ5	ENST00000414165.2,ENST00000403813.2,ENST00000370398.1,ENST00000355194.4,ENST00000355635.3,ENST00000342056.2,ENST00000402622.2	chr6	73900295:73900427:73902287:73902414:73904174:73905137,	73902288	73902414	73902287	73902287	Splice_Site	G	A	.
STAD	TCGA-CD-8527-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75157411	75157411	Splice_Site	C	T	.
STAD	TCGA-CD-8527-01	AZGP1	ENST00000292401.4	chr7	99564890:99564909:99565777:99566053:99569368:99569629,	99565778	99566053	99565777	99565777	Splice_Site	C	T	.
STAD	TCGA-HU-A4GF-01	KANK1	ENST00000382289.2,ENST00000382303.1,ENST00000382286.1,ENST00000382293.3,ENST00000382297.2,ENST00000489369.1	chr9	740791:740934:742204:742405:744490:744589,	742205	742405	742406	742406	Splice_Site	G	A	.
STAD	TCGA-HU-A4H6-01	KLHL5	ENST00000359687.2,ENST00000515612.1	chr4	39114639:39114852:39116778:39116950:39122629:39122825,39114639:39114852:39116778:39116950:39128313:39128415,	39116779	39116950	39116778	39116778	Splice_Site	G	T	.
STAD	TCGA-CD-5813-01	ABCC2	ENST00000370449.4	chr10	101590063:101590190:101590472:101590608:101591367:101591587,	101590473	101590608	101590609	101590609	Splice_Site	G	A	.
STAD	TCGA-CD-5801-01	KCNAB1	ENST00000389636.5,ENST00000490337.1,ENST00000302490.8,ENST00000475456.1,ENST00000389634.5,ENST00000477912.1,ENST00000472028.1,ENST00000471742.1	chr3	156139404:156139448:156170687:156170725:156175241:156175321,	156170688	156170725	156170727	156170727	Splice_Site	T	C	.
STAD	TCGA-CD-A487-01	POLH	ENST00000372226.1,ENST00000535400.1,ENST00000372236.4	chr6	43568724:43568828:43571628:43571748:43572351:43572475,	43571629	43571748	43571749	43571749	Splice_Site	G	C	.
STAD	TCGA-CD-A487-01	DNA2	ENST00000358410.3	chr10	70182453:70182647:70190192:70190412:70191613:70191728,	70190193	70190412	70190414	70190414	Splice_Site	T	C	.
STAD	TCGA-CG-4466-01	USP21	ENST00000368001.1,ENST00000487163.1,ENST00000368002.3,ENST00000482385.1,ENST00000289865.8	chr1	161132708:161132864:161133344:161133409:161133667:161133712,	161133345	161133409	161133410	161133410	Splice_Site	G	C	.
STAD	TCGA-BR-6852-01	MTMR8	ENST00000374852.3	chrX	63576055:63576218:63579284:63579407:63615219:63615311,	63579285	63579407	63579408	63579408	Splice_Site	C	G	.
STAD	TCGA-BR-6852-01	ALAS2	ENST00000477869.1,ENST00000396198.3,ENST00000493869.1,ENST00000335854.4	chrX	55046752:55046937:55047484:55047707:55051150:55051273,	55047485	55047707	55047483	55047483	Splice_Site	A	G	.
STAD	TCGA-BR-6852-01	KYNU	ENST00000264170.4,ENST00000375773.2,ENST00000409512.1	chr2	143715209:143715284:143718192:143718339:143742652:143742751,	143718193	143718339	143718341	143718341	Splice_Site	T	C	.
STAD	TCGA-HU-8610-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596669	136596669	Splice_Site	C	T	.
STAD	TCGA-BR-4256-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20784854:20785061:20792982:20793129:20795049:20795247,	20792983	20793129	20793131	20793131	Splice_Site	T	C	.
STAD	TCGA-BR-4256-01	ANAPC15	ENST00000545944.1	chr11	71821635:71821649:71822202:71822332:71823695:71823732,	71822203	71822332	71822201	71822201	Splice_Site	A	G	.
STAD	TCGA-BR-4256-01	TBATA	ENST00000456372.2,ENST00000299290.1	chr10	72538256:72538389:72539348:72539498:72541556:72541792,72538312:72538392:72539348:72539498:72541556:72541792,	72539349	72539498	72539499	72539499	Splice_Site	C	T	.
STAD	TCGA-BR-4256-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96232106:96232208:96232435:96232567:96235824:96235893,	96232436	96232567	96232568	96232568	Splice_Site	G	A	.
STAD	TCGA-BR-7723-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577156	7577156	Splice_Site	C	T	.
STAD	TCGA-BR-7723-01	CENPH	ENST00000283006.2,ENST00000515001.1,ENST00000502689.1	chr5	68498332:68498396:68498745:68498797:68504022:68504186,	68498746	68498797	68498798	68498798	Splice_Site	G	A	.
STAD	TCGA-BR-4184-01	PGC	ENST00000373025.3,ENST00000425343.2	chr6	41710206:41710227:41711008:41711127:41712134:41712146,	41711009	41711127	41711128	41711128	Splice_Site	C	T	.
STAD	TCGA-BR-4184-01	TRAPPC12	ENST00000473348.1,ENST00000382110.2,ENST00000461577.1,ENST00000497597.1,ENST00000324266.5,ENST00000489032.1	chr2	3464071:3464107:3469367:3469466:3481465:3481566,	3469368	3469466	3469366	3469366	Splice_Site	A	C	.
STAD	TCGA-BR-4184-01	ARHGEF10	ENST00000520359.1,ENST00000518288.1,ENST00000398560.1,ENST00000398564.1,ENST00000520972.1,ENST00000349830.3,ENST00000262112.6	chr8	1814691:1814768:1817359:1817416:1824736:1824900,	1817360	1817416	1817418	1817418	Splice_Site	T	C	.
STAD	TCGA-BR-4184-01	NDUFS2	ENST00000392179.4,ENST00000467295.1,ENST00000465923.1,ENST00000476409.2,ENST00000483804.1,ENST00000367993.3	chr1	161179900:161179978:161180093:161180179:161180380:161180486,	161180094	161180179	161180180	161180180	Splice_Site	G	T	.
STAD	TCGA-CG-4477-01	SMARCC1	ENST00000425518.1,ENST00000462198.1,ENST00000485737.1,ENST00000254480.5	chr3	47727538:47727660:47730876:47730914:47734730:47734790,	47730877	47730914	47730865	47730876	Splice_Site	CTGAATTGTTAC	-	.
STAD	TCGA-CG-4442-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000466653.1,ENST00000264183.3,ENST00000418304.1,ENST00000491632.1	chr1	235392545:235392700:235394427:235394504:235397727:235397807,	235394428	235394504	235394506	235394507	Splice_Site	TA	-	.
STAD	TCGA-CG-4442-01	STK32A	ENST00000398523.3,ENST00000306304.6,ENST00000397936.3	chr5	146741079:146741177:146750216:146750333:146752731:146752857,	146750217	146750333	146750335	146750335	Splice_Site	T	C	.
STAD	TCGA-CG-4442-01	ACPP	ENST00000475741.1,ENST00000336375.5,ENST00000351273.7	chr3	132068763:132068846:132071563:132071667:132075529:132075577,	132071564	132071667	132071668	132071668	Splice_Site	G	A	.
STAD	TCGA-CG-4442-01	TAF2	ENST00000378164.2	chr8	120816200:120816259:120818522:120818641:120843916:120843971,120816200:120816259:120818522:120818641:120831585:120831746,	120818523	120818641	120818521	120818521	Splice_Site	A	G	.
STAD	TCGA-CG-4442-01	FAM83A	ENST00000276699.6,ENST00000536633.1,ENST00000518448.1,ENST00000521468.1,ENST00000318462.6	chr8	124195397:124195576:124204042:124204210:124206263:124206388,	124204043	124204210	124204041	124204041	Splice_Site	A	G	.
STAD	TCGA-CG-4442-01	PYROXD2	ENST00000370575.4,ENST00000483923.1	chr10	100159858:100160014:100167338:100167412:100167660:100167754,	100167339	100167412	100167414	100167414	Splice_Site	T	G	.
STAD	TCGA-BR-6566-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844099	68844099	Splice_Site	G	A	.
STAD	TCGA-BR-6566-01	ILF2	ENST00000368681.1	chr1	153642311:153642354:153642646:153642706:153643393:153643458,	153642647	153642706	153642708	153642708	Splice_Site	T	C	.
STAD	TCGA-BR-6566-01	AAMP	ENST00000444053.1,ENST00000422731.1,ENST00000248450.4,ENST00000420660.1	chr2	219130093:219130184:219130301:219130405:219130553:219130669,	219130302	219130405	219130406	219130406	Splice_Site	C	A	.
STAD	TCGA-BR-6566-01	MET	ENST00000539704.1,ENST00000397752.3,ENST00000318493.6	chr7	116422041:116422151:116423357:116423523:116435708:116435845,	116423358	116423523	116423356	116423356	Splice_Site	A	G	.
STAD	TCGA-HU-A4GH-01	SCTR	ENST00000485440.1,ENST00000019103.5	chr2	120199133:120199175:120204334:120204461:120206264:120206324,	120204335	120204461	120204334	120204334	Splice_Site	C	-	.
STAD	TCGA-HU-A4GH-01	BCKDK	ENST00000394950.3,ENST00000484226.2,ENST00000287507.3,ENST00000394951.1,ENST00000567530.1,ENST00000219794.6,ENST00000566568.1	chr16	31121424:31121445:31121525:31121645:31121721:31121820,	31121526	31121645	31121524	31121524	Splice_Site	A	T	.
STAD	TCGA-HU-A4GH-01	SAP30BP	ENST00000584240.1,ENST00000355423.3,ENST00000583536.1,ENST00000581207.1,ENST00000579877.1,ENST00000580322.1,ENST00000293208.9,ENST00000583063.1,ENST00000580601.1,ENST00000584667.1	chr17	73698559:73698651:73699887:73699939:73700835:73700848,73699390:73699451:73699887:73699939:73700835:73700848,	73699888	73699939	73699940	73699940	Splice_Site	G	A	.
STAD	TCGA-HU-A4GT-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150771125:150771380:150771485:150771575:150771761:150771928,	150771486	150771575	150771577	150771577	Splice_Site	T	C	.
STAD	TCGA-HU-A4GT-01	HCFC2	ENST00000229330.4	chr12	104476490:104476679:104480624:104480792:104481763:104481816,	104480625	104480792	104480794	104480794	Splice_Site	T	C	.
STAD	TCGA-HU-A4GT-01	PPP1R36	ENST00000298705.1	chr14	65017638:65017703:65019531:65019579:65031468:65031543,	65019532	65019579	65019530	65019530	Splice_Site	A	G	.
STAD	TCGA-HU-A4GT-01	BLVRA	ENST00000265523.4,ENST00000402924.1	chr7	43840063:43840171:43843274:43843446:43846575:43846938,	43843275	43843446	43843448	43843448	Splice_Site	T	C	.
STAD	TCGA-HU-A4GT-01	CEP192	ENST00000511820.2,ENST00000510237.1,ENST00000506447.1,ENST00000430049.2,ENST00000325971.8,ENST00000589596.1	chr18	13056629:13056697:13057583:13057732:13059080:13059212,	13057584	13057732	13057734	13057734	Splice_Site	T	C	.
STAD	TCGA-HU-A4GT-01	CPSF1	ENST00000531727.1,ENST00000349769.3,ENST00000526271.1	chr8	145618913:145619011:145619097:145619253:145619327:145619375,	145619098	145619253	145619255	145619255	Splice_Site	T	C	.
STAD	TCGA-HU-A4GT-01	SF3B3	ENST00000302516.5,ENST00000563739.1	chr16	70598967:70599173:70599270:70599427:70601313:70601439,	70599271	70599427	70599269	70599269	Splice_Site	A	G	.
STAD	TCGA-HU-A4GT-01	NEO1	ENST00000261908.6,ENST00000560262.1,ENST00000339362.5	chr15	73566151:73566346:73570471:73570540:73575304:73575452,73567032:73567065:73570471:73570540:73575304:73575452,	73570472	73570540	73570470	73570470	Splice_Site	A	G	.
STAD	TCGA-CG-5724-01	PFKFB2	ENST00000545806.1,ENST00000411990.2,ENST00000367080.3,ENST00000367079.2	chr1	207242768:207242873:207243624:207243754:207244853:207244918,207242768:207242873:207243624:207243754:207244532:207244595,	207243625	207243754	207243623	207243623	Splice_Site	A	C	.
STAD	TCGA-CD-8530-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797464	75797464	Splice_Site	C	T	.
STAD	TCGA-BR-7959-01	SUPT20H	ENST00000356185.3,ENST00000360252.4,ENST00000470359.2,ENST00000497318.1,ENST00000475892.1,ENST00000493537.1,ENST00000464744.1,ENST00000350612.6	chr13	37622014:37622073:37622700:37622736:37625624:37625696,	37622701	37622736	37622737	37622737	Splice_Site	C	T	.
STAD	TCGA-HU-A4H3-01	PARK7	ENST00000469225.1,ENST00000493373.1,ENST00000377488.1,ENST00000377491.1,ENST00000338639.5,ENST00000465354.1,ENST00000493678.1,ENST00000497113.1	chr1	8025410:8025485:8029404:8029464:8030953:8031023,	8029405	8029464	8029466	8029467	Splice_Site	-	A	.
STAD	TCGA-HU-A4H3-01	RELA	ENST00000525658.1,ENST00000529389.1,ENST00000406246.3,ENST00000533546.1,ENST00000532999.1,ENST00000531484.1,ENST00000308639.9,ENST00000525693.1	chr11	65425900:65425970:65426188:65426293:65427136:65427214,	65426189	65426293	65426295	65426295	Splice_Site	T	C	.
STAD	TCGA-HU-A4H3-01	ACHE	ENST00000442452.1	chr7	100488789:100488959:100489954:100490264:100490785:100491525,	100489955	100490264	100489954	100489954	Splice_Site	C	T	.
STAD	TCGA-HU-A4H3-01	ACHE	ENST00000419336.2	chr7	100488789:100488959:100489954:100490175:100490785:100491525,	100489955	100490175	100489954	100489954	Splice_Site	C	T	.
STAD	TCGA-HU-A4H3-01	ACHE	ENST00000412389.1,ENST00000241069.5,ENST00000411582.1,ENST00000428317.1,ENST00000302913.4	chr7	100488789:100488959:100489954:100490439:100490785:100491525,	100489955	100490439	100489954	100489954	Splice_Site	C	T	.
STAD	TCGA-HU-A4H3-01	COL6A6	ENST00000358511.6,ENST00000453409.2	chr3	130367912:130368406:130377519:130377616:130380480:130381152,	130377520	130377616	130377519	130377519	Splice_Site	G	T	.
STAD	TCGA-HU-A4H3-01	MYO18B	ENST00000536101.1,ENST00000418374.2,ENST00000335473.7,ENST00000407587.2	chr22	26181394:26181458:26193919:26194064:26219471:26219645,	26193920	26194064	26193919	26193919	Splice_Site	G	T	.
STAD	TCGA-HU-A4H3-01	PTGS1	ENST00000373698.5,ENST00000362012.2	chr9	125148724:125148900:125152476:125152624:125154467:125154933,125148724:125149011:125152476:125152624:125154467:125154933,	125152477	125152624	125152626	125152626	Splice_Site	T	C	.
STAD	TCGA-BR-4357-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000460276.1,ENST00000436828.1,ENST00000395851.1,ENST00000268712.3	chr17	16062073:16062187:16068292:16068475:16075116:16075309,	16068293	16068475	16068476	16068476	Splice_Site	C	A	.
STAD	TCGA-BR-4253-01	LOX	ENST00000505593.1,ENST00000513319.1,ENST00000231004.4,ENST00000503759.1	chr5	121401639:121402444:121405747:121405863:121406188:121406284,	121405748	121405863	121405747	121405747	Splice_Site	C	T	.
STAD	TCGA-BR-4253-01	ZWINT	ENST00000460654.1	chr10	58118316:58118448:58118565:58118708:58119236:58119293,	58118566	58118708	58118565	58118565	Splice_Site	C	T	.
STAD	TCGA-BR-6455-01	MTHFD1	ENST00000545908.1,ENST00000555252.1,ENST00000216605.8	chr14	64892736:64892910:64894054:64894191:64896901:64896948,	64894055	64894191	64894054	64894054	Splice_Site	G	C	.
STAD	TCGA-F1-6177-01	THBS1	ENST00000260356.5	chr15	39874393:39874953:39875817:39875893:39876188:39876388,	39875818	39875893	39875816	39875817	Splice_Site	-	G	.
STAD	TCGA-F1-6177-01	DSTYK	ENST00000367161.3	chr1	205117332:205117467:205119807:205119922:205126400:205126514,205111632:205116873:205119807:205119922:205126400:205126514,	205119808	205119922	205119923	205119923	Splice_Site	C	T	.
STAD	TCGA-F1-6177-01	VLDLR	ENST00000382099.2,ENST00000382100.3	chr9	2639863:2639981:2641376:2641499:2643159:2643355,	2641377	2641499	2641500	2641500	Splice_Site	G	A	.
STAD	TCGA-BR-7715-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204218311:204218392:204219673:204219742:204226480:204226988,	204219674	204219742	204219673	204219673	Splice_Site	C	-	.
STAD	TCGA-HJ-7597-01	NUDT14	ENST00000392568.2	chr14	105639275:105639598:105642870:105643108:105643299:105643328,	105642871	105643108	105642869	105642869	Splice_Site	A	G	.
STAD	TCGA-HJ-7597-01	SOBP	ENST00000317357.5,ENST00000477448.1	chr6	107824860:107824999:107827445:107827631:107854662:107854814,	107827446	107827631	107827633	107827633	Splice_Site	T	C	.
STAD	TCGA-HJ-7597-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000593407.1,ENST00000599857.1,ENST00000595904.1	chr19	50916759:50916778:50916998:50917136:50918071:50918247,	50916999	50917136	50916998	50916998	Splice_Site	G	T	.
STAD	TCGA-HJ-7597-01	COL27A1	ENST00000356083.3,ENST00000494090.2	chr9	117064361:117064388:117066887:117066953:117068799:117068968,	117066888	117066953	117066886	117066886	Splice_Site	A	G	.
STAD	TCGA-HJ-7597-01	EIF4E	ENST00000507665.1,ENST00000450253.2,ENST00000505992.1,ENST00000280892.6,ENST00000504432.1,ENST00000511644.1	chr4	99809039:99809103:99812387:99812483:99823026:99823133,	99812388	99812483	99812387	99812387	Splice_Site	C	T	.
STAD	TCGA-HJ-7597-01	RALGDS	ENST00000372062.3,ENST00000393160.3,ENST00000424572.1,ENST00000372047.3,ENST00000471109.1,ENST00000372050.3,ENST00000469972.1,ENST00000542690.1,ENST00000493438.1,ENST00000393157.3,ENST00000482648.1	chr9	135978165:135978287:135978616:135978649:135979133:135979220,	135978617	135978649	135978616	135978616	Splice_Site	C	T	.
STAD	TCGA-HJ-7597-01	GFPT2	ENST00000253778.8	chr5	179731771:179731939:179734175:179734303:179739429:179739544,	179734176	179734303	179734305	179734305	Splice_Site	T	C	.
STAD	TCGA-HJ-7597-01	TERF2	ENST00000603068.1,ENST00000254942.3	chr16	69395306:69395392:69400709:69401102:69402278:69402385,	69400710	69401102	69400708	69400708	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	RAMP2	ENST00000589683.1,ENST00000588928.1,ENST00000253796.5	chr17	40913851:40913917:40914372:40914481:40914614:40914716,	40914373	40914481	40914371	40914372	Splice_Site	-	G	.
STAD	TCGA-CG-5721-01	UBE2L3	ENST00000496722.1	chr22	21922025:21922060:21947149:21947245:21965145:21965332,21922018:21922666:21947149:21947245:21965145:21965332,	21947150	21947245	21947247	21947247	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	TRMT10B	ENST00000377754.2,ENST00000297994.3	chr9	37763625:37763862:37768072:37768225:37769937:37770016,37763625:37763750:37768072:37768225:37769937:37770016,	37768073	37768225	37768227	37768227	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	CHORDC1	ENST00000320585.6,ENST00000525317.1	chr11	89944382:89944486:89947185:89947343:89948341:89948398,	89947186	89947343	89947184	89947184	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	ACE	ENST00000290866.4,ENST00000290863.6,ENST00000577418.1,ENST00000490216.2,ENST00000579409.1,ENST00000579314.1	chr17	61571732:61571831:61573754:61573877:61574158:61574346,	61573755	61573877	61573878	61573878	Splice_Site	G	A	.
STAD	TCGA-CG-5721-01	MPP7	ENST00000375719.3,ENST00000540098.1,ENST00000337532.5,ENST00000375732.1,ENST00000441595.2,ENST00000496637.2,ENST00000445954.2	chr10	28348578:28348672:28358700:28358781:28378599:28378770,	28358701	28358781	28358700	28358700	Splice_Site	C	T	.
STAD	TCGA-CG-5721-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100930289:100930388:100930725:100930825:100934449:100934596,	100930726	100930825	100930827	100930827	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	INSR	ENST00000302850.5	chr19	7142826:7143101:7150507:7150543:7152736:7152938,	7150508	7150543	7150506	7150506	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	KCTD17	ENST00000456470.1	chr22	37456862:37456962:37457578:37457669:37458564:37459414,37455352:37455478:37457578:37457669:37458564:37459414,	37457579	37457669	37457578	37457578	Splice_Site	G	T	.
STAD	TCGA-CG-5721-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492938	68492938	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19080476:19080670:19082870:19083041:19086731:19086780,	19082871	19083041	19083042	19083042	Splice_Site	C	A	.
STAD	TCGA-CG-5721-01	RNF13	ENST00000467996.1,ENST00000474348.1,ENST00000459632.1,ENST00000466795.1,ENST00000344229.3,ENST00000392894.3,ENST00000491086.1,ENST00000468648.1,ENST00000490631.1	chr3	149531051:149531140:149589815:149589941:149613259:149613285,149570302:149570383:149589815:149589941:149613259:149613285,	149589816	149589941	149589943	149589943	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24995015:24995158:25002719:25002883:25031463:25031583,	25002720	25002883	25002718	25002718	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	ZNF7	ENST00000544249.1	chr8	146052967:146052994:146054427:146054475:146062775:146062892,	146054428	146054475	146054477	146054477	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	ENKD1	ENST00000243878.4,ENST00000602415.1,ENST00000602942.1	chr16	67697322:67697459:67697559:67697723:67697839:67697965,	67697560	67697723	67697558	67697558	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	DPYSL3	ENST00000519672.1,ENST00000343218.5,ENST00000398514.3	chr5	146788290:146788359:146792170:146792251:146793158:146793220,	146792171	146792251	146792252	146792252	Splice_Site	C	T	.
STAD	TCGA-CG-5721-01	MAP3K10	ENST00000594951.1,ENST00000253055.3	chr19	40711027:40711203:40711817:40712064:40715009:40715109,	40711818	40712064	40712065	40712065	Splice_Site	G	A	.
STAD	TCGA-CG-5721-01	ELL2	ENST00000237853.4	chr5	95242227:95242486:95249474:95249638:95255127:95255249,	95249475	95249638	95249473	95249473	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	TGDS	ENST00000261296.5,ENST00000498294.1	chr13	95235347:95235490:95243106:95243197:95244494:95244563,	95243107	95243197	95243105	95243105	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	TMEM98	ENST00000394642.3,ENST00000395149.2,ENST00000261713.4,ENST00000579849.1,ENST00000583437.2,ENST00000439138.1,ENST00000583120.1,ENST00000578289.1,ENST00000582227.1	chr17	31258610:31258677:31260191:31260323:31261308:31261326,	31260192	31260323	31260324	31260324	Splice_Site	G	A	.
STAD	TCGA-CG-5721-01	KIAA1109	ENST00000495260.1,ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123151085:123151366:123155927:123156178:123159246:123159505,	123155928	123156178	123156180	123156180	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	ACVR1C	ENST00000409680.3,ENST00000243349.8	chr2	158406673:158406904:158412604:158412844:158443698:158443929,	158412605	158412844	158412846	158412846	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	FGD6	ENST00000551521.1,ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95486603:95486621:95488367:95488470:95498782:95498862,	95488368	95488470	95488366	95488366	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72056089	72056089	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	CACNA1B	ENST00000371357.1,ENST00000371363.1,ENST00000277549.5	chr9	140954105:140954189:140967939:140968056:140968452:140968518,	140967940	140968056	140968057	140968057	Splice_Site	G	A	.
STAD	TCGA-CG-5721-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122765538:122765703:122766711:122766891:122767803:122767921,	122766712	122766891	122766892	122766892	Splice_Site	C	A	.
STAD	TCGA-CG-5721-01	SLC38A2	ENST00000256689.5,ENST00000551374.1,ENST00000548236.1,ENST00000549258.1	chr12	46757706:46757786:46758171:46758339:46758426:46758485,	46758172	46758339	46758170	46758170	Splice_Site	A	T	.
STAD	TCGA-CG-5721-01	PUS7L	ENST00000551923.1,ENST00000431332.3,ENST00000550784.1,ENST00000416848.2,ENST00000344862.5,ENST00000547156.1	chr12	44132155:44132194:44136259:44136358:44139848:44140041,	44136260	44136358	44136258	44136258	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	PDXK	ENST00000398078.3,ENST00000498040.1,ENST00000481512.1,ENST00000490666.1,ENST00000467908.1,ENST00000343528.6,ENST00000472777.1,ENST00000291565.4	chr21	45161547:45161652:45163604:45163688:45165959:45166006,	45163605	45163688	45163690	45163690	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	PDXK	ENST00000398085.3	chr21	45161547:45161652:45163549:45163688:45165959:45166006,	45163550	45163688	45163690	45163690	Splice_Site	T	C	.
STAD	TCGA-CG-5721-01	TBX3	ENST00000349155.2	chr12	115115396:115115461:115117309:115117456:115118683:115118951,	115117310	115117456	115117308	115117308	Splice_Site	A	G	.
STAD	TCGA-CG-5721-01	PDLIM5	ENST00000503974.1,ENST00000380180.3,ENST00000514743.1,ENST00000508216.1	chr4	95497093:95497185:95506136:95506154:95506715:95506888,	95506137	95506154	95506156	95506156	Splice_Site	T	C	.
STAD	TCGA-D7-6817-01	PHTF2	ENST00000422959.2,ENST00000248550.7,ENST00000416283.2,ENST00000450574.1	chr7	77522924:77522981:77523298:77523310:77530027:77530097,	77523299	77523310	77523312	77523312	Splice_Site	T	G	.
STAD	TCGA-BR-8484-01	SULF2	ENST00000361612.4,ENST00000495544.1,ENST00000359930.4,ENST00000484875.1	chr20	46288440:46288474:46290516:46290640:46291813:46291956,	46290517	46290640	46290516	46290516	Splice_Site	C	T	.
STAD	TCGA-BR-8373-01	AGO4	ENST00000373210.3	chr1	36292348:36292436:36297027:36297175:36297412:36297532,	36297028	36297175	36297027	36297028	Splice_Site	-	T	.
STAD	TCGA-BR-7197-01	HFM1	ENST00000430465.1	chr1	91781947:91782033:91784849:91784947:91788506:91788554,	91784850	91784947	91784848	91784848	Splice_Site	A	G	.
STAD	TCGA-BR-A452-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112102885:112103087:112111325:112111434:112116486:112116600,	112111326	112111434	112111436	112111436	Splice_Site	T	G	.
STAD	TCGA-BR-8487-01	SIGIRR	ENST00000332725.3,ENST00000527987.1,ENST00000397632.3,ENST00000431843.2	chr11	405727:406059:406348:406538:407061:407135,405727:406059:406348:406538:406842:406993,	406349	406538	406540	406541	Splice_Site	-	G	.
STAD	TCGA-BR-8487-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145537422:145537564:145537736:145537829:145537988:145538065,	145537737	145537829	145537735	145537736	Splice_Site	AG	-	.
STAD	TCGA-BR-8487-01	SEMA4A	ENST00000355014.2	chr1	156123397:156123555:156124340:156124508:156126204:156126365,156119809:156119884:156124340:156124508:156126204:156126365,	156124341	156124508	156124510	156124510	Splice_Site	T	C	.
STAD	TCGA-BR-8487-01	PGAP2	ENST00000464906.2,ENST00000278243.4,ENST00000396991.2	chr11	3837418:3837484:3838582:3838765:3845112:3845145,3832496:3832654:3838582:3838765:3845112:3845145,	3838583	3838765	3838582	3838582	Splice_Site	G	T	.
STAD	TCGA-BR-8487-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47639552:47639699:47641407:47641557:47643434:47643568,	47641408	47641557	47641558	47641558	Splice_Site	G	T	.
STAD	TCGA-BR-8487-01	TBRG4	ENST00000483615.1	chr7	45141451:45141669:45141879:45142090:45142931:45143042,	45141880	45142090	45142092	45142092	Splice_Site	T	C	.
STAD	TCGA-BR-8487-01	TBRG4	ENST00000258770.3,ENST00000361278.3,ENST00000494076.1,ENST00000395655.4,ENST00000495973.1	chr7	45141451:45141669:45141945:45142090:45142931:45143042,	45141946	45142090	45142092	45142092	Splice_Site	T	C	.
STAD	TCGA-BR-8487-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87024466:87024530:87025512:87025589:87029178:87029277,	87025513	87025589	87025590	87025590	Splice_Site	G	A	.
STAD	TCGA-BR-8487-01	PCBP2	ENST00000359462.5,ENST00000546652.2,ENST00000455667.3,ENST00000546463.1,ENST00000447282.1,ENST00000541275.1,ENST00000551104.1,ENST00000550192.1,ENST00000359282.5,ENST00000437231.1,ENST00000552980.2,ENST00000552296.2,ENST00000439930.3,ENST00000552819.1,ENST00000549863.1,ENST00000562264.1,ENST00000603815.1,ENST00000548933.1	chr12	53848643:53848653:53849130:53849154:53849244:53849261,	53849131	53849154	53849156	53849156	Splice_Site	T	C	.
STAD	TCGA-BR-8487-01	LRRK2	ENST00000416796.1	chr12	40646766:40646818:40653281:40653406:40657590:40657703,	40653282	40653406	40653408	40653408	Splice_Site	T	C	.
STAD	TCGA-BR-8487-01	RAB34	ENST00000484161.1,ENST00000395242.2,ENST00000395243.3,ENST00000583538.1,ENST00000395245.3,ENST00000301043.6,ENST00000447716.1,ENST00000430132.2,ENST00000436730.3,ENST00000415040.2,ENST00000450529.1	chr17	27041690:27041728:27041810:27041918:27042049:27042140,	27041811	27041918	27041919	27041919	Splice_Site	C	T	.
STAD	TCGA-BR-8487-01	USP34	ENST00000398571.2	chr2	61520598:61520685:61522083:61522167:61522302:61522425,	61522084	61522167	61522168	61522168	Splice_Site	C	A	.
STAD	TCGA-BR-8487-01	STX8	ENST00000306357.4,ENST00000574431.1	chr17	9395145:9395238:9408354:9408479:9471687:9471775,9395145:9395238:9408354:9408479:9448488:9448592,	9408355	9408479	9408353	9408353	Splice_Site	A	G	.
STAD	TCGA-BR-7703-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15872849:15873056:15882630:15882782:15884764:15884894,	15882631	15882782	15882784	15882784	Splice_Site	T	C	.
STAD	TCGA-BR-7703-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80881109	80881109	Splice_Site	T	C	.
STAD	TCGA-BR-8486-01	ORM1	ENST00000259396.8,ENST00000477456.1	chr9	117086301:117086368:117087069:117087177:117087328:117087432,	117087070	117087177	117087068	117087068	Splice_Site	A	T	.
STAD	TCGA-BR-4280-01	UBAC2	ENST00000376440.2	chr13	99896768:99896878:99966350:99966474:99970275:99970323,99890680:99890808:99966350:99966474:99970275:99970323,	99966351	99966474	99966475	99966475	Splice_Site	G	A	.
STAD	TCGA-HF-7132-01	EXOC3L1	ENST00000564324.1,ENST00000314586.6	chr16	67220459:67220560:67220661:67220787:67220923:67221037,	67220662	67220787	67220789	67220790	Splice_Site	-	G	.
STAD	TCGA-HF-7132-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4,ENST00000463743.1	chr10	95111421:95111603:95113567:95113645:95115384:95115493,	95113568	95113645	95113647	95113648	Splice_Site	-	A	.
STAD	TCGA-HF-7132-01	RAVER2	ENST00000371072.4,ENST00000294428.3	chr1	65270673:65270788:65272888:65273157:65278420:65278532,	65272889	65273157	65272888	65272888	Splice_Site	G	A	.
STAD	TCGA-HF-7132-01	FAM206A	ENST00000445175.1	chr9	111697917:111697969:111698587:111698717:111701475:111701552,111697917:111697969:111698587:111698717:111712786:111713024,111696819:111696845:111698587:111698717:111701475:111701552,	111698588	111698717	111698719	111698719	Splice_Site	T	C	.
STAD	TCGA-HF-7132-01	MMAB	ENST00000541763.2,ENST00000542390.1,ENST00000537496.1,ENST00000536760.1,ENST00000545712.2	chr12	110002923:110002981:110006574:110006668:110011151:110011285,110002923:110002981:110006574:110006668:110009453:110009515,	110006575	110006668	110006573	110006573	Splice_Site	A	G	.
STAD	TCGA-HF-7132-01	BCAS1	ENST00000371440.3,ENST00000448484.1	chr20	52557996:52558063:52561464:52561535:52569970:52570234,	52561465	52561535	52561536	52561536	Splice_Site	C	T	.
STAD	TCGA-HF-7132-01	SLC6A18	ENST00000296821.4,ENST00000324642.3	chr5	1232865:1233003:1235595:1235777:1238064:1238175,	1235596	1235777	1235779	1235779	Splice_Site	T	C	.
STAD	TCGA-HF-7132-01	CLPTM1	ENST00000587537.1,ENST00000588855.1,ENST00000546079.1,ENST00000541297.2,ENST00000337392.5	chr19	45477803:45477854:45480599:45480717:45488475:45488561,	45480600	45480717	45480718	45480718	Splice_Site	G	T	.
STAD	TCGA-BR-8680-01	KAT7	ENST00000509124.1,ENST00000509773.1,ENST00000424009.2	chr17	47866075:47866211:47869247:47869395:47874111:47874288,	47869248	47869395	47869397	47869398	Splice_Site	-	A	.
STAD	TCGA-BR-8680-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109444411:109444567:109445747:109445856:109446746:109446876,	109445748	109445856	109445747	109445747	Splice_Site	G	T	.
STAD	TCGA-BR-8680-01	POLDIP2	ENST00000540200.1,ENST00000003607.4	chr17	26674202:26675257:26676108:26676188:26677463:26677589,	26676109	26676188	26676190	26676190	Splice_Site	T	G	.
STAD	TCGA-BR-8680-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123210172:123210404:123215733:123216151:123220727:123220800,	123215734	123216151	123215733	123215733	Splice_Site	C	T	.
STAD	TCGA-BR-8680-01	MDM1	ENST00000303145.7,ENST00000540418.1,ENST00000411698.2	chr12	68690702:68690762:68696399:68696652:68707222:68707332,	68696400	68696652	68696398	68696398	Splice_Site	A	G	.
STAD	TCGA-BR-8680-01	EIF4A1	ENST00000578495.1	chr17	7478505:7478576:7479847:7480010:7480373:7480428,	7479848	7480010	7480012	7480012	Splice_Site	T	C	.
STAD	TCGA-BR-8680-01	EIF4A1	ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000582746.1,ENST00000577731.1,ENST00000581384.1,ENST00000580888.1,ENST00000577269.1,ENST00000585024.1,ENST00000583802.1	chr17	7477865:7477996:7479841:7480010:7480373:7480428,7478505:7478576:7479841:7480010:7480373:7480428,	7479842	7480010	7480012	7480012	Splice_Site	T	C	.
STAD	TCGA-BR-8680-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7780583:7780721:7785108:7785222:7786044:7786243,	7785109	7785222	7785224	7785224	Splice_Site	T	C	.
STAD	TCGA-BR-8680-01	PPP1R7	ENST00000407025.1	chr2	242089052:242089123:242089673:242089962:242092890:242093019,	242089674	242089962	242089964	242089964	Splice_Site	T	C	.
STAD	TCGA-BR-8680-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50718058:50718205:50718433:50718500:50718917:50719099,	50718434	50718500	50718432	50718432	Splice_Site	A	G	.
STAD	TCGA-BR-8680-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62204810:62205091:62207222:62207345:62207472:62207616,	62207223	62207345	62207347	62207347	Splice_Site	T	C	.
STAD	TCGA-BR-8680-01	HIF1A	ENST00000555014.1	chr14	62203607:62203827:62207260:62207345:62207472:62207616,	62207261	62207345	62207347	62207347	Splice_Site	T	C	.
STAD	TCGA-BR-8680-01	ULK4	ENST00000301831.4,ENST00000420927.1	chr3	41954298:41954391:41957468:41957544:41959948:41960032,	41957469	41957544	41957545	41957545	Splice_Site	C	A	.
STAD	TCGA-BR-8680-01	PSG4	ENST00000433626.2,ENST00000599746.1	chr19	43698660:43698746:43699146:43699425:43702148:43702220,43698660:43698746:43699146:43699425:43708037:43708203,	43699147	43699425	43699426	43699426	Splice_Site	C	T	.
STAD	TCGA-BR-8680-01	CYP4F3	ENST00000587360.1,ENST00000591058.1,ENST00000585846.1,ENST00000586182.2,ENST00000221307.8	chr19	15757861:15757915:15758006:15758134:15759969:15760026,	15758007	15758134	15758136	15758136	Splice_Site	T	C	.
STAD	TCGA-BR-8680-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281952	142281952	Splice_Site	C	A	.
STAD	TCGA-BR-8680-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35124114:35124211:35127601:35127702:35134226:35134290,	35127602	35127702	35127704	35127704	Splice_Site	T	C	.
STAD	TCGA-BR-8680-01	KLK3	ENST00000422986.2	chr19	51359594:51359655:51361284:51361342:51361413:51361418,	51361285	51361342	51361284	51361284	Splice_Site	G	A	.
STAD	TCGA-BR-8680-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56831809:56832025:56835228:56835294:56837435:56837574,	56835229	56835294	56835228	56835228	Splice_Site	G	A	.
STAD	TCGA-BR-8680-01	SH3KBP1	ENST00000379726.3,ENST00000494961.1,ENST00000397821.3,ENST00000379697.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19613066:19613118:19626055:19626163:19649981:19650076,	19626056	19626163	19626054	19626054	Splice_Site	A	C	.
STAD	TCGA-BR-8680-01	ABCA6	ENST00000284425.2	chr17	67129781:67130008:67130779:67130883:67132232:67132391,	67130780	67130883	67130778	67130778	Splice_Site	A	G	.
STAD	TCGA-BR-8680-01	BRD7	ENST00000475877.1,ENST00000394689.2,ENST00000394688.3	chr16	50373886:50373997:50383933:50384078:50388335:50388390,	50383934	50384078	50384079	50384079	Splice_Site	C	A	.
STAD	TCGA-BR-8680-01	TRIP4	ENST00000561265.1,ENST00000558820.1,ENST00000559833.1,ENST00000261884.3,ENST00000557834.1,ENST00000560567.1,ENST00000559565.1	chr15	64686205:64686314:64687596:64687730:64689804:64689934,	64687597	64687730	64687596	64687596	Splice_Site	G	T	.
STAD	TCGA-BR-8680-01	ATP1B1	ENST00000367816.1,ENST00000367815.4	chr1	169075657:169076164:169080607:169080736:169094121:169094277,	169080608	169080736	169080737	169080737	Splice_Site	G	A	.
STAD	TCGA-BR-8680-01	MYO6	ENST00000430435.1	chr6	76602246:76602407:76604947:76604977:76608089:76608128,76604530:76604557:76604947:76604977:76608089:76608128,76604530:76604557:76604947:76604977:76617321:76617425,	76604948	76604977	76604947	76604947	Splice_Site	G	T	.
STAD	TCGA-BR-8680-01	CD109	ENST00000422508.2,ENST00000437994.2,ENST00000287097.5	chr6	74528110:74528258:74530184:74530287:74533181:74538037,	74530185	74530287	74530184	74530184	Splice_Site	G	A	.
STAD	TCGA-BR-8680-01	ADAMTSL3	ENST00000567476.1,ENST00000569510.1,ENST00000561483.1,ENST00000565653.1,ENST00000286744.5	chr15	84373140:84373260:84442274:84442402:84473401:84473447,	84442275	84442402	84442274	84442274	Splice_Site	G	T	.
STAD	TCGA-BR-8680-01	UCK1	ENST00000372215.4,ENST00000372210.3,ENST00000372211.3,ENST00000494584.1	chr9	134400534:134400608:134401315:134401364:134404330:134404425,	134401316	134401364	134401365	134401365	Splice_Site	C	T	.
STAD	TCGA-BR-8081-01	FES	ENST00000328850.3,ENST00000394302.1,ENST00000464684.1,ENST00000414248.2,ENST00000450438.2,ENST00000444422.2,ENST00000394300.3	chr15	91432535:91432673:91432746:91432866:91433069:91433169,	91432747	91432866	91432867	91432867	Splice_Site	G	A	.
STAD	TCGA-BR-8081-01	ZMYND15	ENST00000269289.6,ENST00000433935.1,ENST00000592813.1	chr17	4647663:4647762:4647919:4648073:4648164:4648223,	4647920	4648073	4647919	4647919	Splice_Site	G	T	.
STAD	TCGA-CG-5726-01	CSRP2	ENST00000547435.1,ENST00000311083.5,ENST00000546966.1	chr12	77253326:77253420:77254063:77254193:77256955:77257124,	77254064	77254193	77254062	77254062	Splice_Site	A	G	.
STAD	TCGA-CG-5726-01	PSMC3	ENST00000524447.2	chr11	47444483:47444524:47445659:47445734:47445979:47446042,	47445660	47445734	47445735	47445735	Splice_Site	C	A	.
STAD	TCGA-CG-5726-01	PSMC3	ENST00000531051.2	chr11	47444483:47444524:47445596:47445734:47445979:47446042,47444483:47444524:47445596:47445734:47446157:47446262,	47445597	47445734	47445735	47445735	Splice_Site	C	A	.
STAD	TCGA-CG-5726-01	FAF1	ENST00000371778.4	chr1	51267302:51267349:51323600:51323669:51425438:51425525,	51323601	51323669	51323599	51323599	Splice_Site	A	G	.
STAD	TCGA-CG-5726-01	CDNF	ENST00000378442.1,ENST00000466269.1,ENST00000465530.1	chr10	14861978:14862157:14867477:14867619:14870143:14870204,	14867478	14867619	14867476	14867476	Splice_Site	A	G	.
STAD	TCGA-CG-5726-01	ARFGAP3	ENST00000437119.2,ENST00000263245.5,ENST00000429508.2,ENST00000453516.1	chr22	43218275:43218415:43219661:43219708:43222945:43223005,	43219662	43219708	43219661	43219661	Splice_Site	C	T	.
STAD	TCGA-HU-A4GX-01	TCP11L1	ENST00000528107.1,ENST00000531632.2,ENST00000432887.1,ENST00000527661.1,ENST00000334274.4,ENST00000324357.9	chr11	33083075:33083272:33087375:33087557:33090232:33090405,	33087376	33087557	33087372	33087375	Splice_Site	ACAG	-	.
STAD	TCGA-HU-A4GX-01	SLCO6A1	ENST00000379807.3,ENST00000506729.1	chr5	101811425:101811497:101813379:101813565:101815880:101816138,	101813380	101813565	101813379	101813379	Splice_Site	C	T	.
STAD	TCGA-HU-A4GX-01	SLCO6A1	ENST00000505407.1	chr5	101811425:101811497:101813379:101813394:101815880:101816138,	101813380	101813394	101813379	101813379	Splice_Site	C	T	.
STAD	TCGA-HU-A4GX-01	LRRK1	ENST00000284395.5,ENST00000531270.1,ENST00000388948.3,ENST00000526457.2	chr15	101601375:101601493:101602778:101602895:101605556:101606410,	101602779	101602895	101602777	101602777	Splice_Site	A	C	.
STAD	TCGA-HU-A4GX-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113351602	113351602	Splice_Site	A	G	.
STAD	TCGA-HU-A4GX-01	XAB2	ENST00000534844.1,ENST00000358368.4	chr19	7685160:7685332:7685432:7685555:7685731:7685922,	7685433	7685555	7685556	7685556	Splice_Site	C	A	.
STAD	TCGA-HU-A4GX-01	OSBP2	ENST00000453621.1,ENST00000535268.1,ENST00000452656.1,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31285166:31285221:31285476:31285623:31286714:31286952,	31285477	31285623	31285625	31285625	Splice_Site	T	C	.
STAD	TCGA-HU-A4GX-01	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000473086.2,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42490267:42490381:42492087:42492291:42492469:42492529,	42492088	42492291	42492087	42492087	Splice_Site	C	T	.
STAD	TCGA-HU-A4GX-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39713791:39713815:39716469:39716684:39719640:39719695,	39716470	39716684	39716468	39716468	Splice_Site	A	G	.
STAD	TCGA-HU-A4GX-01	AP4M1	ENST00000445208.1	chr7	99699502:99699591:99700297:99700404:99701031:99701068,	99700298	99700404	99700406	99700406	Splice_Site	T	C	.
STAD	TCGA-HU-A4GX-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148454074:148454242:148456395:148456446:148456639:148456730,	148456396	148456446	148456448	148456448	Splice_Site	T	C	.
STAD	TCGA-CG-5728-01	TXNDC12	ENST00000371626.4,ENST00000472624.1	chr1	52490181:52490251:52492946:52493020:52494249:52494302,	52492947	52493020	52493022	52493023	Splice_Site	-	G	.
STAD	TCGA-CG-5728-01	SPTLC3	ENST00000399002.2	chr20	13090758:13090864:13098152:13098372:13107237:13107364,	13098153	13098372	13098152	13098152	Splice_Site	G	A	.
STAD	TCGA-CG-5728-01	CPB2	ENST00000439329.3	chr13	46658353:46658478:46661879:46661955:46679070:46679161,	46661880	46661955	46661878	46661878	Splice_Site	A	G	.
STAD	TCGA-CG-5728-01	UGGT2	ENST00000491509.1,ENST00000376747.3	chr13	96519592:96519677:96529532:96529618:96529951:96530110,	96529533	96529618	96529620	96529620	Splice_Site	T	C	.
STAD	TCGA-CG-5728-01	KDELC2	ENST00000375648.1,ENST00000323468.5,ENST00000434945.2,ENST00000530529.1	chr11	108350027:108350222:108351906:108352103:108352732:108352785,	108351907	108352103	108351905	108351905	Splice_Site	A	G	.
STAD	TCGA-CG-4437-01	AGAP1	ENST00000409538.1,ENST00000336665.5	chr2	236839408:236839567:236877105:236877267:236945204:236945341,236817485:236817550:236877105:236877267:236945204:236945341,	236877106	236877267	236877059	236877105	Splice_Site	ACTCTGCATTTTTTTTTTTTTTTTTGCCTTTTCCGGTCCAATGGCAG	-	.
STAD	TCGA-CG-4437-01	PES1	ENST00000354694.7,ENST00000402281.1,ENST00000402284.3,ENST00000405677.1,ENST00000335214.6	chr22	30976998:30977088:30977320:30977395:30977514:30977631,	30977321	30977395	30977396	30977396	Splice_Site	C	G	.
STAD	TCGA-CD-8534-01	DDB1	ENST00000540166.1,ENST00000539332.1,ENST00000450997.2,ENST00000301764.7	chr11	61071336:61071507:61076454:61076549:61077267:61077432,	61076455	61076549	61076454	61076454	Splice_Site	C	T	.
STAD	TCGA-CD-5799-01	DUSP19	ENST00000354221.4	chr2	183943716:183943887:183948235:183948282:183951767:183951920,	183948236	183948282	183948284	183948285	Splice_Site	-	A	.
STAD	TCGA-BR-8372-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66947087:66947184:66947393:66947516:66948118:66948156,	66947394	66947516	66947518	66947519	Splice_Site	-	G	.
STAD	TCGA-BR-8372-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000467936.1,ENST00000265537.3	chr3	45542032:45542071:45554626:45554727:45557585:45557768,	45554627	45554727	45554625	45554625	Splice_Site	A	C	.
STAD	TCGA-BR-8372-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812409	31812409	Splice_Site	C	T	.
STAD	TCGA-BR-8372-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5235349:5235447:5238478:5238639:5241313:5241433,	5238479	5238639	5238641	5238641	Splice_Site	T	C	.
STAD	TCGA-BR-8372-01	NEMF	ENST00000555411.1,ENST00000555970.1,ENST00000545773.1,ENST00000556925.1,ENST00000298310.5,ENST00000546046.1	chr14	50269170:50269291:50269386:50269445:50269954:50270012,	50269387	50269445	50269385	50269385	Splice_Site	A	G	.
STAD	TCGA-BR-8372-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000474446.1	chr1	182847155:182847308:182848384:182848545:182849631:182849743,	182848385	182848545	182848383	182848383	Splice_Site	A	C	.
STAD	TCGA-BR-8372-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61744345:61744420:61759125:61759259:61762876:61762938,	61759126	61759259	61759260	61759260	Splice_Site	G	A	.
STAD	TCGA-BR-8372-01	PKD1	ENST00000472659.1,ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2143670:2143739:2143811:2144014:2144092:2144147,	2143812	2144014	2144016	2144016	Splice_Site	T	C	.
STAD	TCGA-BR-8372-01	PFKFB3	ENST00000540253.1,ENST00000379789.4,ENST00000379775.4	chr10	6265920:6265983:6268154:6268328:6274857:6274915,6266468:6266586:6268154:6268328:6274857:6274915,6266128:6266176:6268154:6268328:6274857:6274915,	6268155	6268328	6268153	6268153	Splice_Site	A	G	.
STAD	TCGA-BR-8372-01	RCBTB2	ENST00000344532.3,ENST00000430805.2	chr13	49076878:49077050:49084764:49084907:49085905:49086013,	49084765	49084907	49084763	49084763	Splice_Site	A	G	.
STAD	TCGA-BR-8372-01	PLEKHA5	ENST00000355397.3,ENST00000539256.1,ENST00000299275.6,ENST00000538714.1	chr12	19496256:19496368:19498775:19498822:19501332:19501453,	19498776	19498822	19498775	19498775	Splice_Site	G	T	.
STAD	TCGA-BR-8368-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000392381.3,ENST00000447466.1,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4	chr3	196846280:196846401:196857397:196857542:196863412:196863549,	196857398	196857542	196857544	196857545	Splice_Site	-	A	.
STAD	TCGA-BR-8368-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109634812:109634958:109637206:109637357:109639371:109639506,	109637207	109637357	109637206	109637206	Splice_Site	G	A	.
STAD	TCGA-BR-8368-01	COL5A2	ENST00000374866.3	chr2	189951451:189951496:189953420:189953498:189957035:189957146,	189953421	189953498	189953419	189953419	Splice_Site	A	G	.
STAD	TCGA-BR-8368-01	MMP11	ENST00000215743.3,ENST00000460352.1,ENST00000477567.1,ENST00000437086.1,ENST00000465385.1	chr22	24122545:24122689:24122768:24122902:24123045:24123194,	24122769	24122902	24122768	24122768	Splice_Site	G	T	.
STAD	TCGA-HU-A4H8-01	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751371	13751371	Splice_Site	T	-	.
STAD	TCGA-HU-A4H8-01	BIN1	ENST00000259238.4,ENST00000484253.1,ENST00000393040.3	chr2	127808377:127808488:127808729:127808819:127816586:127816731,127808377:127808488:127808729:127808819:127809830:127809938,127808377:127808488:127808729:127808819:127815048:127815177,	127808730	127808819	127808729	127808729	Splice_Site	C	T	.
STAD	TCGA-HU-A4H8-01	DLGAP3	ENST00000235180.4,ENST00000373347.1	chr1	35333136:35333228:35334205:35334690:35350578:35350664,	35334206	35334690	35334691	35334691	Splice_Site	C	T	.
STAD	TCGA-HU-A4H8-01	GRIK2	ENST00000318991.6,ENST00000369134.4,ENST00000413795.1,ENST00000421544.1,ENST00000369137.3,ENST00000369138.1	chr6	102130427:102130481:102134054:102134228:102247522:102247666,	102134055	102134228	102134229	102134229	Splice_Site	G	A	.
STAD	TCGA-HU-A4H8-01	PEX3	ENST00000367591.4	chr6	143792693:143792748:143793296:143793465:143795922:143795993,	143793297	143793465	143793296	143793296	Splice_Site	G	T	.
STAD	TCGA-HU-A4H8-01	GSDMB	ENST00000468820.1,ENST00000524039.1	chr17	38063213:38063240:38066008:38066177:38068578:38068596,38065210:38065295:38066008:38066177:38068578:38068596,38062447:38062524:38066008:38066177:38068578:38068596,	38066009	38066177	38066178	38066178	Splice_Site	C	T	.
STAD	TCGA-HU-A4H8-01	ITGB1BP2	ENST00000538820.1,ENST00000373829.3	chrX	70524036:70524150:70524391:70524454:70524814:70525151,	70524392	70524454	70524391	70524391	Splice_Site	G	A	.
STAD	TCGA-HU-A4H8-01	CRYBB3	ENST00000215855.2	chr22	25599729:25599862:25601186:25601329:25603013:25603234,	25601187	25601329	25601330	25601330	Splice_Site	G	A	.
STAD	TCGA-HU-A4H8-01	FAM13A	ENST00000508360.1,ENST00000264344.5,ENST00000511976.1,ENST00000508369.1,ENST00000503556.1,ENST00000513837.1	chr4	89653272:89653349:89658622:89658706:89660180:89660276,	89658623	89658706	89658707	89658707	Splice_Site	C	A	.
STAD	TCGA-CD-5800-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6833538:6833636:6833721:6833744:6833918:6833964,	6833722	6833744	6833745	6833745	Splice_Site	G	A	.
STAD	TCGA-BR-8690-01	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329269	56329269	Splice_Site	C	T	.
STAD	TCGA-BR-8363-01	COL5A1	ENST00000371817.3	chr9	137674512:137674566:137676834:137676942:137677840:137677894,	137676835	137676942	137676834	137676834	Splice_Site	G	-	.
STAD	TCGA-BR-8363-01	DMC1	ENST00000478820.1,ENST00000216024.2	chr22	38934543:38934617:38948670:38948712:38951361:38951414,38945929:38946002:38948670:38948712:38951361:38951414,	38948671	38948712	38948670	38948670	Splice_Site	C	T	.
STAD	TCGA-BR-8363-01	B4GALT4	ENST00000480814.1,ENST00000483209.1,ENST00000359213.3,ENST00000393765.2,ENST00000467604.1,ENST00000460321.1	chr3	118937558:118937619:118942904:118943092:118945655:118945888,	118942905	118943092	118943093	118943093	Splice_Site	C	A	.
STAD	TCGA-BR-8363-01	PROCA1	ENST00000473751.1,ENST00000578097.1	chr17	27031548:27031634:27031725:27031861:27037888:27038104,27031548:27031634:27031725:27031861:27033697:27033781,	27031726	27031861	27031862	27031862	Splice_Site	C	A	.
STAD	TCGA-BR-8363-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336882	56336882	Splice_Site	A	G	.
STAD	TCGA-CD-8525-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61423984:61424080:61432527:61432671:61443853:61444085,	61432528	61432671	61432672	61432672	Splice_Site	C	A	.
STAD	TCGA-BR-7851-01	AMFR	ENST00000492830.1	chr16	56403104:56403239:56419830:56419934:56435644:56435687,	56419831	56419934	56419830	56419830	Splice_Site	C	T	.
STAD	TCGA-BR-7851-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000591529.1,ENST00000426948.2,ENST00000443826.3	chr19	3008866:3008943:3009539:3009700:3011019:3011158,	3009540	3009700	3009702	3009702	Splice_Site	T	C	.
STAD	TCGA-BR-7851-01	EPG5	ENST00000592272.1,ENST00000590884.1,ENST00000587884.1,ENST00000282041.5,ENST00000585906.1	chr18	43467815:43467872:43469762:43469905:43479368:43479531,	43469763	43469905	43469907	43469907	Splice_Site	T	C	.
STAD	TCGA-BR-7851-01	HDAC10	ENST00000349505.4,ENST00000216271.5,ENST00000477814.1,ENST00000497952.1,ENST00000498366.1,ENST00000415993.1,ENST00000483222.1,ENST00000448072.1	chr22	50685303:50685395:50686120:50686205:50686318:50686574,	50686121	50686205	50686206	50686206	Splice_Site	C	A	.
STAD	TCGA-BR-7851-01	LPCAT4	ENST00000314891.6	chr15	34651789:34651946:34652311:34652410:34653600:34653733,	34652312	34652410	34652412	34652412	Splice_Site	T	C	.
STAD	TCGA-CD-A4MI-01	TGFB3	ENST00000554980.1,ENST00000238682.3	chr14	76425631:76425688:76427265:76427419:76429658:76429830,	76427266	76427419	76427265	76427265	Splice_Site	C	T	.
STAD	TCGA-CD-A4MI-01	SLC7A6	ENST00000219343.6,ENST00000379152.3,ENST00000566454.1,ENST00000567325.1	chr16	68330266:68330416:68330529:68330713:68331136:68331336,	68330530	68330713	68330529	68330529	Splice_Site	G	A	.
STAD	TCGA-CG-4306-01	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1,ENST00000461616.1,ENST00000483944.1	chr3	124810282:124810400:124810944:124811042:124826324:124826421,	124810945	124811042	124810944	124810944	Splice_Site	C	-	.
STAD	TCGA-CG-4306-01	FGR	ENST00000374005.3,ENST00000374004.1,ENST00000399173.1,ENST00000545953.1,ENST00000374003.3,ENST00000457296.1	chr1	27948163:27948168:27949552:27949655:27950201:27950440,	27949553	27949655	27949552	27949552	Splice_Site	C	T	.
STAD	TCGA-HU-A4GP-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596669	136596669	Splice_Site	C	T	.
STAD	TCGA-HU-A4GP-01	CASP4	ENST00000529183.1	chr11	104820387:104820504:104825473:104825728:104839245:104839274,	104825474	104825728	104825729	104825729	Splice_Site	C	T	.
STAD	TCGA-CG-5722-01	NOD2	ENST00000534057.1	chr16	50746104:50746284:50750497:50750581:50753835:50753919,	50750498	50750581	50750497	50750497	Splice_Site	G	C	.
STAD	TCGA-HU-A4G9-01	ACP2	ENST00000256997.3,ENST00000537863.1,ENST00000529663.1,ENST00000531547.1,ENST00000531004.1,ENST00000533929.1,ENST00000527256.1,ENST00000534448.1	chr11	47264789:47264872:47266285:47266418:47267232:47267385,47264789:47264872:47266285:47266418:47266855:47266945,	47266286	47266418	47266285	47266285	Splice_Site	C	-	.
STAD	TCGA-HU-A4G9-01	PI4KA	ENST00000449120.1,ENST00000572273.1,ENST00000485963.1,ENST00000255882.6	chr22	21178634:21178702:21188849:21188943:21192902:21193019,	21188850	21188943	21188945	21188946	Splice_Site	-	A	.
STAD	TCGA-HU-A4G9-01	ASIC3	ENST00000468325.1,ENST00000297512.8,ENST00000357922.4,ENST00000490540.1,ENST00000485929.1,ENST00000377904.4,ENST00000498105.1,ENST00000349064.5	chr7	150748896:150748988:150749069:150749149:150749252:150749324,	150749070	150749149	150749150	150749150	Splice_Site	G	C	.
STAD	TCGA-HU-A4G9-01	MST1R	ENST00000463789.1,ENST00000411578.2,ENST00000296474.3,ENST00000434765.1,ENST00000440292.1,ENST00000344206.4	chr3	49928629:49928739:49928831:49929013:49929190:49929271,	49928832	49929013	49929015	49929015	Splice_Site	T	C	.
STAD	TCGA-HU-8602-01	TMEM106C	ENST00000547682.1	chr12	48360465:48360515:48360990:48361044:48361915:48361954,48360465:48360515:48360990:48361044:48362038:48362271,	48360991	48361044	48361046	48361046	Splice_Site	T	C	.
STAD	TCGA-HU-8602-01	LYPLA1	ENST00000519926.1,ENST00000316963.3,ENST00000517297.1,ENST00000521352.1	chr8	54974813:54974884:54978307:54978373:55013467:55013499,54975887:54975935:54978307:54978373:55013467:55013499,	54978308	54978373	54978307	54978307	Splice_Site	C	T	.
STAD	TCGA-HU-8602-01	SLC25A45	ENST00000294187.6,ENST00000524438.1,ENST00000533629.1,ENST00000530936.1,ENST00000398802.1,ENST00000525944.1,ENST00000527174.1,ENST00000526259.1,ENST00000417511.2,ENST00000529962.1,ENST00000526898.1	chr11	65146928:65147032:65147337:65147409:65147602:65147646,	65147338	65147409	65147336	65147336	Splice_Site	A	G	.
STAD	TCGA-HU-8602-01	POLR3D	ENST00000397802.4,ENST00000306433.4,ENST00000517789.1	chr8	22105993:22106162:22106556:22106822:22107587:22107672,	22106557	22106822	22106824	22106824	Splice_Site	T	C	.
STAD	TCGA-HU-8602-01	KCTD10	ENST00000537165.1	chr12	109895434:109895487:109895796:109895886:109898440:109898610,	109895797	109895886	109895795	109895795	Splice_Site	A	G	.
STAD	TCGA-HU-8602-01	KCTD10	ENST00000542858.1	chr12	109895434:109895487:109895796:109895853:109898440:109898610,	109895797	109895853	109895795	109895795	Splice_Site	A	G	.
STAD	TCGA-HU-8602-01	KCTD10	ENST00000538161.1,ENST00000540411.1,ENST00000228495.6	chr12	109895434:109895487:109895796:109895883:109898440:109898610,	109895797	109895883	109895795	109895795	Splice_Site	A	G	.
STAD	TCGA-HU-8602-01	KCTD10	ENST00000541077.1	chr12	109895434:109895487:109895796:109895989:109898440:109898610,	109895797	109895989	109895795	109895795	Splice_Site	A	G	.
STAD	TCGA-HU-8602-01	UPP1	ENST00000421046.1	chr7	48141420:48141579:48142893:48143008:48146469:48146679,48141420:48141467:48142893:48143008:48146469:48146679,48141420:48141579:48142893:48143008:48143378:48143588,	48142894	48143008	48142893	48142893	Splice_Site	G	A	.
STAD	TCGA-HU-8602-01	MKS1	ENST00000581761.1,ENST00000393120.2,ENST00000337050.7,ENST00000546108.1,ENST00000585134.1,ENST00000313863.6,ENST00000577824.1,ENST00000537529.2,ENST00000393119.2	chr17	56288019:56288085:56288340:56288383:56289738:56289795,	56288341	56288383	56288385	56288385	Splice_Site	T	C	.
STAD	TCGA-EQ-A4SO-01	CBFB	ENST00000290858.6,ENST00000563939.2,ENST00000412916.2,ENST00000561924.2	chr16	67070541:67070658:67100584:67100701:67116115:67116200,	67100585	67100701	67100583	67100583	Splice_Site	A	C	.
STAD	TCGA-EQ-A4SO-01	UBE2S	ENST00000264552.9	chr19	55913081:55913130:55915655:55915846:55918182:55918330,	55915656	55915846	55915847	55915847	Splice_Site	C	G	.
STAD	TCGA-D7-6518-01	SEC24A	ENST00000398844.2	chr5	134041016:134041127:134044402:134044578:134050713:134050851,	134044403	134044578	134044579	134044579	Splice_Site	G	T	.
STAD	TCGA-BR-8382-01	ATP6V0A1	ENST00000264649.6,ENST00000393829.2,ENST00000343619.4,ENST00000544137.1,ENST00000537728.1,ENST00000546249.1,ENST00000585525.1	chr17	40650941:40651060:40652724:40652941:40653214:40653322,	40652725	40652941	40652943	40652943	Splice_Site	T	C	.
STAD	TCGA-BR-4361-01	DNAJC17	ENST00000559238.1,ENST00000220496.4	chr15	41068401:41068490:41068739:41068825:41071420:41071508,	41068740	41068825	41068826	41068826	Splice_Site	C	T	.
STAD	TCGA-BR-4361-01	NLRP3	ENST00000391827.2,ENST00000336119.3,ENST00000391828.3	chr1	247597464:247597575:247599271:247599442:247607273:247607444,	247599272	247599442	247599444	247599444	Splice_Site	T	C	.
STAD	TCGA-BR-4361-01	CHRNA5	ENST00000559554.1	chr15	78857912:78858167:78873152:78873304:78878986:78879031,	78873153	78873304	78873306	78873306	Splice_Site	T	C	.
STAD	TCGA-BR-4361-01	SUCLA2	ENST00000378654.3,ENST00000470760.1	chr13	48563016:48563116:48570977:48571158:48575315:48575376,	48570978	48571158	48570976	48570976	Splice_Site	A	G	.
STAD	TCGA-BR-4361-01	GRB14	ENST00000488342.1	chr2	165358764:165358845:165364964:165365113:165365251:165365362,	165364965	165365113	165364963	165364963	Splice_Site	A	G	.
STAD	TCGA-BR-4361-01	GRB14	ENST00000543549.1,ENST00000263915.3,ENST00000446413.2	chr2	165358764:165358845:165364964:165365060:165365251:165365362,	165364965	165365060	165364963	165364963	Splice_Site	A	G	.
STAD	TCGA-BR-4361-01	LCLAT1	ENST00000465200.1	chr2	30682417:30682588:30748452:30748621:30755981:30756132,30670141:30670249:30748452:30748621:30755981:30756132,30670111:30670270:30748452:30748621:30755981:30756180,	30748453	30748621	30748623	30748623	Splice_Site	T	C	.
STAD	TCGA-BR-4361-01	DDX47	ENST00000545038.1,ENST00000541537.1,ENST00000426619.2,ENST00000352940.4,ENST00000358007.3	chr12	12967064:12967158:12974141:12974330:12974588:12974660,	12974142	12974330	12974332	12974332	Splice_Site	T	C	.
STAD	TCGA-BR-4361-01	PLXNA3	ENST00000493546.1,ENST00000369682.3	chrX	153697759:153697825:153698030:153698127:153698319:153698510,	153698031	153698127	153698129	153698129	Splice_Site	T	C	.
STAD	TCGA-BR-4361-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2,ENST00000474749.1	chr20	58456491:58456547:58456999:58457057:58457149:58457220,	58457000	58457057	58456998	58456998	Splice_Site	A	G	.
STAD	TCGA-BR-8369-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	T	.
STAD	TCGA-CG-4476-01	PAK1	ENST00000528203.1,ENST00000356341.3,ENST00000530617.1,ENST00000278568.4	chr11	77064580:77064644:77066712:77066887:77069942:77069998,	77066713	77066887	77066712	77066712	Splice_Site	C	T	.
STAD	TCGA-IN-7808-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96859602:96860861:96863847:96864033:96866556:96866667,	96863848	96864033	96864034	96864034	Splice_Site	G	A	.
STAD	TCGA-IN-7808-01	KRT6C	ENST00000252250.6	chr12	52864915:52865080:52865204:52865300:52865455:52865515,	52865205	52865300	52865203	52865203	Splice_Site	A	T	.
STAD	TCGA-BR-8284-01	CLK3	ENST00000569406.1,ENST00000352989.5,ENST00000562078.1,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000483723.1,ENST00000563842.1,ENST00000345005.4	chr15	74917310:74917359:74918142:74918309:74919692:74919742,	74918143	74918309	74918310	74918311	Splice_Site	-	T	.
STAD	TCGA-BR-8284-01	HTATIP2	ENST00000443524.2,ENST00000419348.2,ENST00000421577.2,ENST00000451739.2	chr11	20388719:20388827:20398125:20398263:20403723:20403785,	20398126	20398263	20398124	20398124	Splice_Site	A	G	.
STAD	TCGA-BR-8483-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	T	.
STAD	TCGA-BR-8360-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66947087:66947184:66947393:66947516:66948118:66948156,	66947394	66947516	66947518	66947519	Splice_Site	-	G	.
STAD	TCGA-BR-8360-01	CHRD	ENST00000470150.1,ENST00000204604.1,ENST00000460627.1,ENST00000448472.1,ENST00000450923.1,ENST00000545352.1,ENST00000420973.1	chr3	184101099:184101206:184101310:184101430:184102324:184102481,	184101311	184101430	184101309	184101309	Splice_Site	A	G	.
STAD	TCGA-BR-8360-01	NOP58	ENST00000472050.1,ENST00000488403.1,ENST00000426814.1	chr2	203130501:203130709:203139835:203139912:203142672:203142725,	203139836	203139912	203139835	203139835	Splice_Site	G	T	.
STAD	TCGA-BR-8676-01	FRMD3	ENST00000376438.1,ENST00000304195.3	chr9	85987827:85987870:86004518:86004623:86152999:86153353,	86004519	86004623	86004624	86004624	Splice_Site	C	G	.
STAD	TCGA-B7-5816-01	PHIP	ENST00000275034.4	chr6	79726260:79726359:79727062:79727103:79727199:79727300,	79727063	79727103	79727105	79727106	Splice_Site	TA	-	.
STAD	TCGA-B7-5816-01	CUL4A	ENST00000375441.3,ENST00000326335.4,ENST00000472083.1,ENST00000375440.4,ENST00000451881.1	chr13	113907395:113907509:113909006:113909112:113909266:113909439,	113909007	113909112	113909114	113909114	Splice_Site	T	C	.
STAD	TCGA-B7-5816-01	POLQ	ENST00000264233.5,ENST00000488282.1	chr3	121240849:121240996:121248491:121248639:121251836:121252056,	121248492	121248639	121248490	121248490	Splice_Site	A	G	.
STAD	TCGA-B7-5816-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7166164:7166415:7167978:7168105:7170547:7170762,	7167979	7168105	7167978	7167978	Splice_Site	C	T	.
STAD	TCGA-B7-5816-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3	chr10	34690753:34690845:34759012:34759191:34805906:34806087,34739244:34739376:34759012:34759191:34805906:34806087,	34759013	34759191	34759011	34759011	Splice_Site	A	G	.
STAD	TCGA-BR-4368-01	MAGI2	ENST00000354212.4,ENST00000519748.1,ENST00000522391.1,ENST00000419488.1	chr7	77762205:77762377:77764337:77764523:77789341:77789590,	77764338	77764523	77764525	77764526	Splice_Site	-	A	.
STAD	TCGA-BR-4368-01	MEAF6	ENST00000373074.1,ENST00000296214.5	chr1	37959534:37959708:37961485:37961519:37967404:37967597,	37961486	37961519	37961520	37961520	Splice_Site	C	T	.
STAD	TCGA-BR-4368-01	IGF2BP3	ENST00000421467.2	chr7	23391124:23391205:23401152:23401216:23458394:23458443,23391124:23391205:23401152:23401216:23508100:23508161,	23401153	23401216	23401218	23401218	Splice_Site	T	C	.
STAD	TCGA-BR-4368-01	WNT10A	ENST00000258411.3	chr2	219746965:219747145:219754705:219755085:219757495:219757868,	219754706	219755085	219754704	219754704	Splice_Site	A	G	.
STAD	TCGA-BR-4292-01	ITGAL	ENST00000356798.6	chr16	30490411:30490529:30490651:30490782:30492759:30492905,	30490652	30490782	30490784	30490785	Splice_Site	-	A	.
STAD	TCGA-BR-4292-01	FUBP3	ENST00000319725.9	chr9	133501750:133501892:133506014:133506175:133506943:133507017,	133506015	133506175	133506013	133506014	Splice_Site	-	G	.
STAD	TCGA-BR-4292-01	MBOAT2	ENST00000474341.1	chr2	9013323:9013430:9017116:9017343:9022640:9022695,	9017117	9017343	9017344	9017344	Splice_Site	C	A	.
STAD	TCGA-BR-4292-01	MBOAT2	ENST00000477073.1,ENST00000305997.3,ENST00000486484.1	chr2	9013323:9013430:9017159:9017343:9022640:9022695,	9017160	9017343	9017344	9017344	Splice_Site	C	A	.
STAD	TCGA-BR-4292-01	SHMT2	ENST00000554310.1,ENST00000554600.1,ENST00000553837.1,ENST00000553474.1,ENST00000556689.1,ENST00000554975.1,ENST00000557433.1,ENST00000556737.1,ENST00000328923.3,ENST00000554604.1,ENST00000414700.3,ENST00000557427.1,ENST00000557487.1,ENST00000555773.1,ENST00000554656.1,ENST00000557703.1,ENST00000553529.1,ENST00000449049.3	chr12	57624749:57624783:57625263:57625343:57625495:57625673,	57625264	57625343	57625344	57625344	Splice_Site	G	A	.
STAD	TCGA-BR-4292-01	KCNQ5	ENST00000414165.2,ENST00000403813.2,ENST00000370398.1,ENST00000355194.4,ENST00000355635.3,ENST00000342056.2,ENST00000402622.2	chr6	73900295:73900427:73902287:73902414:73904174:73905137,	73902288	73902414	73902416	73902416	Splice_Site	T	C	.
STAD	TCGA-BR-4292-01	CSNK1G3	ENST00000345990.4,ENST00000521364.1,ENST00000512718.3,ENST00000511130.2,ENST00000395412.1,ENST00000510842.2,ENST00000360683.2	chr5	122940417:122940524:122941032:122941056:122950035:122950149,	122941033	122941056	122941058	122941058	Splice_Site	T	C	.
STAD	TCGA-BR-4292-01	DLG4	ENST00000451807.2,ENST00000485100.1,ENST00000302955.6,ENST00000399510.2,ENST00000399506.2	chr17	7106263:7106366:7106511:7106648:7106742:7106912,	7106512	7106648	7106649	7106649	Splice_Site	C	T	.
STAD	TCGA-BR-4292-01	CUBN	ENST00000377833.4	chr10	17146417:17146604:17147455:17147574:17151638:17151734,	17147456	17147574	17147455	17147455	Splice_Site	C	T	.
STAD	TCGA-BR-4292-01	GSK3B	ENST00000264235.8,ENST00000316626.5	chr3	119624601:119624699:119631550:119631657:119634890:119635021,	119631551	119631657	119631658	119631658	Splice_Site	C	G	.
STAD	TCGA-BR-4292-01	ARIH2	ENST00000486316.1,ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000452385.1,ENST00000474936.2	chr3	49002351:49002415:49004557:49004708:49005966:49006014,	49004558	49004708	49004710	49004710	Splice_Site	T	C	.
STAD	TCGA-BR-4292-01	ALOX12B	ENST00000319144.4	chr17	7976974:7977075:7978912:7979034:7979492:7979662,	7978913	7979034	7978911	7978911	Splice_Site	A	G	.
STAD	TCGA-HU-A4GU-01	KAT7	ENST00000509124.1,ENST00000509773.1,ENST00000424009.2	chr17	47866075:47866211:47869247:47869395:47874111:47874288,	47869248	47869395	47869397	47869398	Splice_Site	-	A	.
STAD	TCGA-HU-A4GU-01	FHOD3	ENST00000592128.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34298519:34298678:34310608:34310767:34320618:34320801,	34310609	34310767	34310607	34310607	Splice_Site	A	C	.
STAD	TCGA-D7-A4YV-01	WDR19	ENST00000502389.1,ENST00000503697.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3,ENST00000506503.1	chr4	39187345:39187437:39188158:39188224:39191275:39191401,	39188159	39188224	39188158	39188158	Splice_Site	G	T	.
STAD	TCGA-BR-6802-01	RPUSD1	ENST00000007264.2,ENST00000567283.1,ENST00000567114.1,ENST00000565377.1,ENST00000561734.1	chr16	836148:836377:836826:836928:837076:837179,	836827	836928	836929	836929	Splice_Site	C	A	.
STAD	TCGA-BR-6802-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467628:136467801:136473119:136473264:136479493:136479576,	136473120	136473264	136473119	136473119	Splice_Site	G	T	.
STAD	TCGA-BR-6802-01	KAT2B	ENST00000426228.1	chr3	20082189:20082272:20113824:20113951:20136754:20136900,	20113825	20113951	20113953	20113953	Splice_Site	T	C	.
STAD	TCGA-BR-8059-01	SPATA17	ENST00000471021.1	chr1	217975059:217975192:218036115:218036198:218040219:218040930,	218036116	218036198	218036114	218036114	Splice_Site	A	G	.
STAD	TCGA-HU-A4H5-01	SNCAIP	ENST00000542191.1,ENST00000512385.1,ENST00000508017.1,ENST00000379538.3,ENST00000515215.2,ENST00000510658.1	chr5	121726829:121726886:121739487:121739560:121767663:121767777,	121739488	121739560	121739486	121739486	Splice_Site	A	C	.
STAD	TCGA-HU-A4H5-01	MSL1	ENST00000579565.1,ENST00000577454.1,ENST00000578648.1	chr17	38279537:38279633:38282435:38282659:38285497:38285513,	38282436	38282659	38282661	38282661	Splice_Site	T	A	.
STAD	TCGA-CD-A48A-01	TCP1	ENST00000544255.1,ENST00000392168.2,ENST00000321394.7	chr6	160200016:160200293:160200926:160201119:160201474:160201598,160200658:160200822:160200926:160201119:160201474:160201598,	160200927	160201119	160201120	160201120	Splice_Site	C	T	.
STAD	TCGA-FP-A4BE-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32446927:32447080:32458630:32459056:32480394:32481489,	32458631	32459056	32458629	32458629	Splice_Site	A	G	.
STAD	TCGA-FP-A4BE-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132476717:132476775:132479411:132479501:132489621:132489729,	132479412	132479501	132479502	132479502	Splice_Site	G	A	.
STAD	TCGA-FP-A4BE-01	ANXA5	ENST00000296511.5,ENST00000515017.1,ENST00000511552.1,ENST00000501272.2	chr4	122593687:122593781:122599048:122599105:122599569:122599649,	122599049	122599105	122599047	122599047	Splice_Site	A	G	.
STAD	TCGA-HU-A4GY-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000507921.1,ENST00000414217.1	chr5	102489551:102489638:102490373:102490449:102490537:102490647,	102490374	102490449	102490450	102490450	Splice_Site	G	T	.
STAD	TCGA-BR-4363-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000337620.4	chr7	26245987:26246130:26248012:26248175:26251281:26251337,	26248013	26248175	26248012	26248012	Splice_Site	G	A	.
STAD	TCGA-BR-4363-01	TMCO3	ENST00000434316.2	chr13	114174930:114175048:114188359:114188555:114193671:114193797,	114188360	114188555	114188557	114188557	Splice_Site	T	C	.
STAD	TCGA-CG-5734-01	SND1	ENST00000354725.3	chr7	127724775:127724899:127725762:127725832:127726989:127727103,	127725763	127725832	127725833	127725833	Splice_Site	G	A	.
STAD	TCGA-D7-6525-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511426	20511426	Splice_Site	T	C	.
STAD	TCGA-BR-8683-01	TAF6	ENST00000453269.2,ENST00000449571.1,ENST00000472509.1,ENST00000344095.4,ENST00000452041.1,ENST00000523306.1,ENST00000493322.1,ENST00000437822.2	chr7	99710469:99710540:99711238:99711392:99711490:99711577,99711023:99711028:99711238:99711392:99711490:99711577,	99711239	99711392	99711237	99711237	Splice_Site	A	G	.
STAD	TCGA-BR-8683-01	PDE5A	ENST00000394439.1,ENST00000512450.1,ENST00000513594.1,ENST00000264805.5,ENST00000354960.3	chr4	120440233:120440294:120442089:120442215:120446703:120446850,	120442090	120442215	120442088	120442088	Splice_Site	A	C	.
STAD	TCGA-CG-5723-01	ACP2	ENST00000256997.3,ENST00000537863.1,ENST00000529663.1,ENST00000531547.1,ENST00000531004.1,ENST00000533929.1,ENST00000527256.1,ENST00000534448.1	chr11	47264789:47264872:47266285:47266418:47267232:47267385,47264789:47264872:47266285:47266418:47266855:47266945,	47266286	47266418	47266285	47266285	Splice_Site	C	-	.
STAD	TCGA-CG-5723-01	SEC13	ENST00000383801.2,ENST00000337354.4,ENST00000397109.3,ENST00000350697.3,ENST00000477547.2,ENST00000431352.1,ENST00000397105.3,ENST00000397117.1	chr3	10354329:10354414:10357004:10357120:10359733:10359764,	10357005	10357120	10357003	10357004	Splice_Site	-	C	.
STAD	TCGA-CG-5723-01	PANK1	ENST00000307534.4	chr10	91359008:91359262:91371452:91371805:91404356:91405215,	91371453	91371805	91371452	91371452	Splice_Site	C	T	.
STAD	TCGA-CG-5723-01	CLPB	ENST00000544683.1,ENST00000535477.1,ENST00000538039.1,ENST00000543042.1	chr11	72069923:72070052:72091324:72091428:72114009:72114082,	72091325	72091428	72091323	72091323	Splice_Site	A	G	.
STAD	TCGA-CG-5723-01	ZNF334	ENST00000347606.4	chr20	45133252:45133379:45140720:45140779:45142048:45142193,	45140721	45140779	45140720	45140720	Splice_Site	C	T	.
STAD	TCGA-CG-5723-01	IWS1	ENST00000295321.4	chr2	128247407:128247519:128249546:128249664:128250856:128250986,	128249547	128249664	128249666	128249666	Splice_Site	T	C	.
STAD	TCGA-CG-5723-01	ADD2	ENST00000355733.3	chr2	70900009:70900138:70900372:70900458:70901809:70901957,	70900373	70900458	70900460	70900460	Splice_Site	T	C	.
STAD	TCGA-CG-5723-01	ELMOD3	ENST00000444108.3,ENST00000409890.2,ENST00000409013.3,ENST00000409344.3,ENST00000490508.1,ENST00000446464.3,ENST00000393852.4,ENST00000428955.2,ENST00000315658.7	chr2	85598213:85598332:85598562:85598685:85604466:85604597,	85598563	85598685	85598687	85598687	Splice_Site	T	C	.
STAD	TCGA-CG-5723-01	FSIP1	ENST00000350221.3	chr15	40005644:40005782:40018789:40018948:40030291:40030402,	40018790	40018948	40018788	40018788	Splice_Site	A	G	.
STAD	TCGA-HU-A4GQ-01	PIGB	ENST00000539642.1	chr15	55611470:55611611:55621921:55622052:55626064:55626205,	55621922	55622052	55621921	55621922	Splice_Site	-	T	.
STAD	TCGA-HU-A4GQ-01	EFCAB2	ENST00000473686.1,ENST00000391837.3,ENST00000425550.1,ENST00000487845.1,ENST00000551317.1,ENST00000366521.3,ENST00000366522.2,ENST00000447569.2,ENST00000497591.1,ENST00000549220.1,ENST00000366523.1	chr1	245222687:245222760:245245384:245245464:245246743:245246786,	245245385	245245464	245245466	245245466	Splice_Site	T	A	.
STAD	TCGA-HU-A4GQ-01	STK10	ENST00000176763.5	chr5	171509964:171510088:171517235:171517366:171520415:171520581,	171517236	171517366	171517367	171517367	Splice_Site	C	A	.
STAD	TCGA-HU-A4GQ-01	FN3KRP	ENST00000573158.1	chr17	80674662:80674772:80680679:80680762:80684355:80684369,	80680680	80680762	80680764	80680764	Splice_Site	T	C	.
STAD	TCGA-HU-A4GQ-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000524495.1,ENST00000530582.1,ENST00000533792.1	chr11	7670030:7670142:7670377:7670466:7670762:7670885,	7670378	7670466	7670467	7670467	Splice_Site	G	A	.
STAD	TCGA-HU-A4GQ-01	TIGIT	ENST00000481065.1,ENST00000383671.3,ENST00000486257.1	chr3	114012874:114012969:114014391:114014721:114018443:114018550,	114014392	114014721	114014391	114014391	Splice_Site	G	T	.
STAD	TCGA-HU-A4GQ-01	WDR91	ENST00000344400.5,ENST00000466182.1,ENST00000423565.1,ENST00000354475.4	chr7	134877982:134878151:134878329:134878424:134879685:134879836,	134878330	134878424	134878329	134878329	Splice_Site	C	T	.
STAD	TCGA-HU-A4GQ-01	PPP1R14B	ENST00000542235.1,ENST00000309318.3,ENST00000392210.2	chr11	64012020:64012294:64012401:64012434:64012675:64012755,	64012402	64012434	64012400	64012400	Splice_Site	A	G	.
STAD	TCGA-D7-6520-01	RGS2	ENST00000464302.1	chr1	192778272:192778311:192779295:192779561:192780110:192780162,	192779296	192779561	192779562	192779563	Splice_Site	-	T	.
STAD	TCGA-D7-6520-01	VPS36	ENST00000475375.1	chr13	53013232:53013303:53016511:53016580:53024633:53024757,	53016512	53016580	53016581	53016581	Splice_Site	C	G	.
STAD	TCGA-D7-6522-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1	chr16	68846037:68846166:68847215:68847398:68849417:68849662,	68847216	68847398	68847399	68847399	Splice_Site	G	T	.
STAD	TCGA-BR-8296-01	RRP12	ENST00000536831.1,ENST00000315563.6,ENST00000370992.4,ENST00000414986.1	chr10	99141142:99141240:99141471:99141583:99144922:99145014,	99141472	99141583	99141471	99141471	Splice_Site	C	G	.
STAD	TCGA-CG-5733-01	APPL2	ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3,ENST00000547790.1,ENST00000553109.1	chr12	105569812:105569860:105570653:105570794:105571003:105571040,	105570654	105570794	105570796	105570797	Splice_Site	-	G	.
STAD	TCGA-CG-5733-01	TXNRD2	ENST00000474308.1,ENST00000535882.1,ENST00000400521.1,ENST00000400519.1,ENST00000400518.1,ENST00000494454.1,ENST00000400525.1,ENST00000334363.9,ENST00000491939.1,ENST00000542719.1	chr22	19886571:19886591:19898899:19898970:19902736:19902799,	19898900	19898970	19898899	19898899	Splice_Site	C	T	.
STAD	TCGA-CG-5733-01	LAMA5	ENST00000252999.3	chr20	60903296:60903501:60903899:60904111:60904193:60904309,	60903900	60904111	60904112	60904112	Splice_Site	C	T	.
STAD	TCGA-CG-5733-01	DOT1L	ENST00000398665.3,ENST00000452696.1,ENST00000609690.1	chr19	2191082:2191239:2193687:2193782:2194513:2194548,	2193688	2193782	2193687	2193687	Splice_Site	G	A	.
STAD	TCGA-CG-5733-01	KLHDC2	ENST00000298307.5,ENST00000555443.1,ENST00000553579.1,ENST00000554115.1	chr14	50247420:50247493:50249087:50249175:50249259:50249312,	50249088	50249175	50249176	50249176	Splice_Site	G	T	.
STAD	TCGA-CG-5733-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63848788:63848875:63851161:63851289:63856329:63856449,	63851162	63851289	63851161	63851161	Splice_Site	C	T	.
STAD	TCGA-CG-5733-01	SCNN1D	ENST00000400928.3,ENST00000325425.8,ENST00000379101.4,ENST00000379099.3,ENST00000379116.5,ENST00000338555.2	chr1	1223318:1223417:1225650:1225768:1225856:1225935,	1225651	1225768	1225650	1225650	Splice_Site	G	T	.
STAD	TCGA-CG-5733-01	GALNT2	ENST00000543760.1,ENST00000494106.1,ENST00000541865.1,ENST00000366672.4	chr1	230371759:230371858:230372098:230372166:230372405:230372471,	230372099	230372166	230372168	230372168	Splice_Site	T	C	.
STAD	TCGA-FP-7829-01	L3MBTL4	ENST00000284898.6,ENST00000400105.2	chr18	5969391:5969561:6046726:6046753:6080879:6080950,	6046727	6046753	6046755	6046755	Splice_Site	T	C	.
STAD	TCGA-BR-7901-01	CUBN	ENST00000377833.4	chr10	16930415:16930565:16932369:16932526:16940994:16941182,	16932370	16932526	16932369	16932369	Splice_Site	C	T	.
STAD	TCGA-BR-8078-01	IRAK3	ENST00000261233.4,ENST00000457197.2	chr12	66610950:66611015:66620502:66620617:66622031:66622150,	66620503	66620617	66620619	66620619	Splice_Site	T	C	.
STAD	TCGA-BR-8078-01	GZMH	ENST00000216338.4	chr14	25075690:25075952:25076354:25076612:25076817:25076953,	25076355	25076612	25076614	25076614	Splice_Site	T	G	.
STAD	TCGA-BR-8078-01	TESK2	ENST00000538496.1,ENST00000372084.1,ENST00000372086.3,ENST00000341771.6	chr1	45820974:45821121:45851583:45851632:45887396:45887518,	45851584	45851632	45851582	45851582	Splice_Site	A	G	.
STAD	TCGA-BR-8078-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000470525.1,ENST00000485535.1,ENST00000448774.2,ENST00000456774.1,ENST00000358536.4	chr3	48451423:48451486:48451704:48451789:48451863:48451902,	48451705	48451789	48451704	48451704	Splice_Site	C	T	.
STAD	TCGA-BR-8078-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30020140:30020223:30024636:30024732:30024834:30025019,	30024637	30024732	30024733	30024733	Splice_Site	C	T	.
STAD	TCGA-BR-8078-01	GLI1	ENST00000546141.1,ENST00000543426.1,ENST00000228682.2,ENST00000532291.1,ENST00000528467.1	chr12	57858485:57858651:57858893:57859038:57859389:57859479,	57858894	57859038	57859040	57859040	Splice_Site	T	C	.
STAD	TCGA-BR-8078-01	VWF	ENST00000261405.5	chr12	6134745:6134859:6135071:6135212:6138507:6138654,	6135072	6135212	6135070	6135070	Splice_Site	A	G	.
STAD	TCGA-HU-A4G2-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189856212:189856257:189856394:189856448:189856909:189856954,	189856395	189856448	189856394	189856394	Splice_Site	G	T	.
STAD	TCGA-HF-7136-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000483086.1,ENST00000487169.1,ENST00000310931.4	chr2	242176029:242176184:242178063:242178202:242179016:242179151,	242178064	242178202	242178204	242178204	Splice_Site	T	A	.
STAD	TCGA-CD-5804-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000263960.2	chr2	198318216:198318388:198327262:198327455:198334793:198334895,198324655:198324805:198327262:198327455:198334793:198334895,	198327263	198327455	198327261	198327261	Splice_Site	A	G	.
STAD	TCGA-CD-5804-01	KAZN	ENST00000400797.3,ENST00000422387.2,ENST00000376030.2,ENST00000361144.5,ENST00000503743.1,ENST00000400798.2	chr1	15382586:15382776:15386667:15386798:15390067:15390118,	15386668	15386798	15386799	15386799	Splice_Site	G	A	.
STAD	TCGA-HU-A4GN-01	CDC25C	ENST00000503022.1,ENST00000513970.1,ENST00000510119.1,ENST00000323760.6	chr5	137654907:137655063:137661709:137661743:137664172:137664218,137661503:137661593:137661709:137661743:137664172:137664218,	137661710	137661743	137661709	137661709	Splice_Site	C	T	.
STAD	TCGA-HU-A4GN-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1	chr8	51449237:51449368:51465609:51465739:51503438:51503477,	51465610	51465739	51465608	51465608	Splice_Site	A	G	.
STAD	TCGA-HU-A4GN-01	SNX31	ENST00000311812.2	chr8	101642554:101642619:101648124:101648239:101661501:101661576,	101648125	101648239	101648123	101648123	Splice_Site	A	G	.
STAD	TCGA-BR-8080-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50655214:50655418:50666408:50666573:50667670:50667802,	50666409	50666573	50666574	50666574	Splice_Site	C	T	.
STAD	TCGA-HU-8245-01	IRF2	ENST00000393593.3,ENST00000510814.1,ENST00000507523.1,ENST00000505067.1	chr4	185329358:185329429:185339320:185339367:185339685:185339744,	185339321	185339367	185339369	185339369	Splice_Site	T	A	.
STAD	TCGA-HU-8245-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984671	11984671	Splice_Site	A	G	.
STAD	TCGA-VQ-A8DL-01	HAAO	ENST00000402698.2,ENST00000294973.6	chr2	42994734:42994817:42994999:42995068:42996852:42996998,	42995000	42995068	42995060	42995070	Splice_Site	GGCGATCACCT	-	p.211_splice
STAD	TCGA-VQ-A8DL-01	TRIM40	ENST00000396581.1,ENST00000376724.2,ENST00000307859.4	chr6	30114848:30114986:30115296:30115319:30115501:30116512,	30115297	30115319	30115318	30115321	Splice_Site	AGGT	-	p.230_splice
STAD	TCGA-B7-5816-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3	chr10	34690753:34690845:34759012:34759191:34805906:34806087,34739244:34739376:34759012:34759191:34805906:34806087,	34759013	34759191	34759011	34759011	Splice_Site	A	G	p.K194_splice
STAD	TCGA-B7-5816-01	CUL4A	ENST00000375441.3,ENST00000326335.4,ENST00000472083.1,ENST00000375440.4,ENST00000451881.1	chr13	113907395:113907509:113909006:113909112:113909266:113909439,	113909007	113909112	113909114	113909114	Splice_Site	T	C	p.E620_splice
STAD	TCGA-B7-5816-01	SNRPA1	ENST00000560856.1,ENST00000558036.1,ENST00000558020.1,ENST00000559309.1	chr15	101832166:101832245:101833229:101833377:101835301:101835408,	101833230	101833377	101833229	101833229	Splice_Site	C	G	p.C77_splice
STAD	TCGA-B7-5816-01	CAMTA2	ENST00000572543.1,ENST00000572326.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4877679:4877795:4880352:4880487:4881798:4881864,	4880353	4880487	4880351	4880351	Splice_Site	A	G	p.D634_splice
STAD	TCGA-B7-5816-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7166164:7166415:7167978:7168105:7170547:7170762,	7167979	7168105	7167978	7167978	Splice_Site	C	T	p.A537_splice
STAD	TCGA-B7-5816-01	RELB	ENST00000221452.8,ENST00000505236.1,ENST00000540120.1	chr19	45515193:45515534:45525310:45525468:45528586:45528678,	45525311	45525468	45525310	45525310	Splice_Site	G	A	p.L169_splice
STAD	TCGA-B7-5816-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511425	20511425	Splice_Site	C	A	p.G117_splice
STAD	TCGA-B7-5816-01	POLQ	ENST00000264233.5,ENST00000488282.1	chr3	121240849:121240996:121248491:121248639:121251836:121252056,	121248492	121248639	121248490	121248490	Splice_Site	A	G	p.G370_splice
STAD	TCGA-B7-5816-01	GOLIM4	ENST00000309027.4,ENST00000470487.1	chr3	167728530:167728611:167742313:167742382:167742715:167742883,	167742314	167742382	167742312	167742312	Splice_Site	A	G	p.E620_splice
STAD	TCGA-B7-5816-01	GYG2	ENST00000398806.3,ENST00000381163.3	chrX	2793850:2793955:2795240:2795348:2799092:2799132,	2795241	2795348	2795350	2795350	Splice_Site	T	C	p.E448_splice
STAD	TCGA-B7-5818-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578176	7578176	Splice_Site	C	T	p.E224_splice
STAD	TCGA-BR-4184-01	TRIM33	ENST00000358465.2,ENST00000450349.2,ENST00000448034.1,ENST00000369543.2	chr1	114964057:114964258:114967212:114967377:114968070:114968345,	114967213	114967377	114967378	114967378	Splice_Site	C	T	p.P566_splice
STAD	TCGA-BR-4184-01	SERINC5	ENST00000512721.1,ENST00000512972.2,ENST00000509193.1	chr5	79473707:79473886:79498704:79498872:79551714:79551838,	79498705	79498872	79498704	79498704	Splice_Site	C	T	p.H65_splice
STAD	TCGA-BR-4184-01	ANKAR	ENST00000441800.1,ENST00000281412.6	chr2	190592581:190592823:190592992:190593146:190602408:190602567,	190592993	190593146	190593148	190593148	Splice_Site	T	A	p.G1011_splice
STAD	TCGA-BR-4184-01	BAIAP3	ENST00000397488.2,ENST00000421665.2,ENST00000426824.3,ENST00000397489.1,ENST00000568887.1,ENST00000568198.1,ENST00000562208.1,ENST00000324385.5	chr16	1394469:1394526:1394601:1394699:1394798:1394850,	1394602	1394699	1394700	1394700	Splice_Site	G	A	p.S621_splice
STAD	TCGA-BR-4184-01	FNBP1L	ENST00000370256.4	chr1	94000261:94000465:94001888:94002047:94006598:94006613,94000310:94000465:94001888:94002047:94009663:94009773,	94001889	94002047	94001888	94001888	Splice_Site	G	A	p.P331_splice
STAD	TCGA-BR-4184-01	NDUFS2	ENST00000392179.4,ENST00000467295.1,ENST00000465923.1,ENST00000476409.2,ENST00000483804.1,ENST00000367993.3	chr1	161179900:161179978:161180093:161180179:161180380:161180486,	161180094	161180179	161180180	161180180	Splice_Site	G	T	p.S289_splice
STAD	TCGA-BR-4184-01	ANO8	ENST00000597643.1,ENST00000159087.4	chr19	17443909:17444048:17444230:17444363:17444498:17444609,	17444231	17444363	17444229	17444229	Splice_Site	G	A	p.S117_splice
STAD	TCGA-BR-4184-01	CP	ENST00000497902.1,ENST00000264613.6,ENST00000490639.1,ENST00000494544.1	chr3	148903090:148903191:148904306:148904519:148905838:148905883,148903025:148903233:148904306:148904519:148905838:148905883,	148904307	148904519	148904520	148904520	Splice_Site	C	T	p.S622_splice
STAD	TCGA-BR-4184-01	ARHGEF10	ENST00000520359.1,ENST00000518288.1,ENST00000398560.1,ENST00000398564.1,ENST00000520972.1,ENST00000349830.3,ENST00000262112.6	chr8	1814691:1814768:1817359:1817416:1824736:1824900,	1817360	1817416	1817418	1817418	Splice_Site	T	C	p.D227_splice
STAD	TCGA-BR-4184-01	PREB	ENST00000456259.1	chr2	27354307:27354376:27354541:27354699:27354877:27354950,	27354542	27354699	27354540	27354540	Splice_Site	G	A	p.R387_splice
STAD	TCGA-BR-4184-01	PGC	ENST00000373025.3,ENST00000425343.2	chr6	41710206:41710227:41711008:41711127:41712134:41712146,	41711009	41711127	41711128	41711128	Splice_Site	C	T	p.T110_splice
STAD	TCGA-BR-4201-01	ZPBP2	ENST00000584588.1	chr17	38024468:38024659:38024801:38024867:38026946:38027072,	38024802	38024867	38024801	38024801	Splice_Site	G	A	p.V18_splice
STAD	TCGA-BR-4201-01	NDUFAF3	ENST00000326925.6,ENST00000480392.1	chr3	49059553:49059654:49059778:49059971:49060134:49060201,	49059779	49059971	49059972	49059972	Splice_Site	G	A	p.N90_splice
STAD	TCGA-BR-4201-01	FBXW7	ENST00000603841.1,ENST00000603548.1,ENST00000281708.4	chr4	153268081:153268223:153271193:153271276:153332454:153333024,	153271194	153271276	153271192	153271192	Splice_Site	A	G	p.S195_splice
STAD	TCGA-BR-4201-01	EHMT2	ENST00000436026.1	chr6	31852449:31852576:31852688:31852832:31854357:31854459,	31852689	31852832	31852688	31852688	Splice_Site	C	T	p.N816_splice
STAD	TCGA-BR-4201-01	EHMT2	ENST00000477678.1,ENST00000375528.4,ENST00000375530.4,ENST00000375537.4,ENST00000395728.3	chr6	31852449:31852576:31852688:31852793:31854357:31854459,	31852689	31852793	31852688	31852688	Splice_Site	C	T	p.N816_splice
STAD	TCGA-BR-4253-01	ZWINT	ENST00000460654.1	chr10	58118316:58118448:58118565:58118708:58119236:58119293,	58118566	58118708	58118565	58118565	Splice_Site	C	T	p.R208_splice
STAD	TCGA-BR-4253-01	LOX	ENST00000505593.1,ENST00000513319.1,ENST00000231004.4,ENST00000503759.1	chr5	121401639:121402444:121405747:121405863:121406188:121406284,	121405748	121405863	121405747	121405747	Splice_Site	C	T	p.P416_splice
STAD	TCGA-BR-4255-01	CACNA1C	ENST00000480911.1,ENST00000399637.1,ENST00000399644.1,ENST00000399591.1,ENST00000399641.1,ENST00000399601.1,ENST00000399629.1,ENST00000327702.7	chr12	2706395:2706455:2706602:2706662:2711019:2711126,2705039:2705169:2706602:2706662:2711019:2711126,	2706603	2706662	2706664	2706664	Splice_Site	T	C	p.K971_splice
STAD	TCGA-BR-4256-01	CD1B	ENST00000368168.3	chr1	158299737:158299920:158300585:158300852:158301152:158301321,	158300586	158300852	158300854	158300854	Splice_Site	T	C	p.A21_splice
STAD	TCGA-BR-4256-01	RNF144A	ENST00000320892.6,ENST00000467276.1	chr2	7164499:7164647:7170256:7170346:7179759:7179791,	7170257	7170346	7170255	7170255	Splice_Site	A	G	p.D220_splice
STAD	TCGA-BR-4256-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20784854:20785061:20792982:20793129:20795049:20795247,	20792983	20793129	20793131	20793131	Splice_Site	T	C	p.K747_splice
STAD	TCGA-BR-4256-01	SEC61G	ENST00000395535.3,ENST00000352861.4,ENST00000415949.1,ENST00000450622.1	chr7	54819949:54820113:54823471:54823574:54825187:54825283,	54823472	54823574	54823470	54823470	Splice_Site	A	G	p.V66_splice
STAD	TCGA-BR-4257-01	CUBN	ENST00000377833.4	chr10	16930415:16930565:16932369:16932526:16940994:16941182,	16932370	16932526	16932369	16932369	Splice_Site	C	T	p.R2919_splice
STAD	TCGA-BR-4257-01	EXOC6	ENST00000495132.1,ENST00000443748.2,ENST00000260762.6,ENST00000371552.4,ENST00000371547.4	chr10	94715336:94715471:94733809:94733989:94757230:94757372,	94733810	94733989	94733809	94733809	Splice_Site	G	T	p.D592_splice
STAD	TCGA-BR-4257-01	API5	ENST00000526394.1,ENST00000420461.2,ENST00000529932.1,ENST00000378852.3,ENST00000534600.1,ENST00000531273.1,ENST00000455725.2	chr11	43352057:43352114:43356827:43356904:43357407:43357490,	43356828	43356904	43356827	43356827	Splice_Site	G	T	p.D427_splice
STAD	TCGA-BR-4257-01	CHEK2	ENST00000425190.2,ENST00000439200.1,ENST00000382580.2,ENST00000348295.3,ENST00000328354.6,ENST00000433728.1,ENST00000402731.1,ENST00000405598.1,ENST00000382566.1,ENST00000404276.1	chr22	29107896:29108005:29120964:29121112:29121230:29121236,29115382:29115473:29120964:29121112:29121230:29121236,	29120965	29121112	29120963	29120963	Splice_Site	A	G	p.V198_splice
STAD	TCGA-BR-4257-01	LRCH4	ENST00000467201.1	chr7	100174524:100174628:100174708:100175012:100175119:100175175,	100174709	100175012	100175014	100175014	Splice_Site	T	C	p.R393_splice
STAD	TCGA-BR-4257-01	LRCH4	ENST00000485071.1,ENST00000497245.1,ENST00000310300.6	chr7	100174708:100174777:100174895:100175012:100175119:100175175,	100174896	100175012	100175014	100175014	Splice_Site	T	C	p.R393_splice
STAD	TCGA-BR-4257-01	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101237400:101237567:101243383:101243516:101245638:101245765,	101243384	101243516	101243518	101243518	Splice_Site	C	T	p.R663_splice
STAD	TCGA-BR-4257-01	FAM49B	ENST00000401979.2,ENST00000519824.2,ENST00000519540.1,ENST00000522250.1,ENST00000522941.1,ENST00000522746.1,ENST00000517654.1,ENST00000523509.1,ENST00000519110.1	chr8	130861488:130861615:130863080:130863160:130864407:130864524,	130863081	130863160	130863080	130863080	Splice_Site	C	T	p.P238_splice
STAD	TCGA-BR-4267-01	ZNHIT6	ENST00000370574.3,ENST00000431532.2	chr1	86119646:86119781:86123529:86123654:86142918:86142996,	86123530	86123654	86123656	86123656	Splice_Site	T	G	p.R416_splice
STAD	TCGA-BR-4280-01	UBAC2	ENST00000376440.2	chr13	99896768:99896878:99966350:99966474:99970275:99970323,99890680:99890808:99966350:99966474:99970275:99970323,	99966351	99966474	99966475	99966475	Splice_Site	G	A	p.Q171_splice
STAD	TCGA-BR-4280-01	EXOC7	ENST00000357231.4,ENST00000411744.2,ENST00000589210.1,ENST00000467929.2,ENST00000405068.3,ENST00000589507.2,ENST00000607838.1,ENST00000442951.1,ENST00000332065.5,ENST00000405575.4,ENST00000335146.7	chr17	74094069:74094099:74097351:74097457:74097759:74097934,	74097352	74097457	74097459	74097459	Splice_Site	T	C	p.G104_splice
STAD	TCGA-BR-4292-01	CUBN	ENST00000377833.4	chr10	17146417:17146604:17147455:17147574:17151638:17151734,	17147456	17147574	17147455	17147455	Splice_Site	C	T	p.I410_splice
STAD	TCGA-BR-4292-01	SHMT2	ENST00000554310.1,ENST00000554600.1,ENST00000553837.1,ENST00000553474.1,ENST00000556689.1,ENST00000554975.1,ENST00000557433.1,ENST00000556737.1,ENST00000328923.3,ENST00000554604.1,ENST00000414700.3,ENST00000557427.1,ENST00000557487.1,ENST00000555773.1,ENST00000554656.1,ENST00000557703.1,ENST00000553529.1,ENST00000449049.3	chr12	57624749:57624783:57625263:57625343:57625495:57625673,	57625264	57625343	57625344	57625344	Splice_Site	G	A	p.R104_splice
STAD	TCGA-BR-4292-01	TXNRD1	ENST00000524698.1,ENST00000525265.1,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104728014:104728110:104732916:104733051:104742130:104742261,	104732917	104733051	104733053	104733053	Splice_Site	T	C	p.E627_splice
STAD	TCGA-BR-4292-01	DLG4	ENST00000451807.2,ENST00000485100.1,ENST00000302955.6,ENST00000399510.2,ENST00000399506.2	chr17	7106263:7106366:7106511:7106648:7106742:7106912,	7106512	7106648	7106649	7106649	Splice_Site	C	T	p.G212_splice
STAD	TCGA-BR-4292-01	ALOX12B	ENST00000319144.4	chr17	7976974:7977075:7978912:7979034:7979492:7979662,	7978913	7979034	7978911	7978911	Splice_Site	A	G	p.G552_splice
STAD	TCGA-BR-4292-01	MBOAT2	ENST00000474341.1	chr2	9013323:9013430:9017116:9017343:9022640:9022695,	9017117	9017343	9017344	9017344	Splice_Site	C	A	p.R169_splice
STAD	TCGA-BR-4292-01	MBOAT2	ENST00000477073.1,ENST00000305997.3,ENST00000486484.1	chr2	9013323:9013430:9017159:9017343:9022640:9022695,	9017160	9017343	9017344	9017344	Splice_Site	C	A	p.R169_splice
STAD	TCGA-BR-4292-01	ARIH2	ENST00000486316.1,ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000452385.1,ENST00000474936.2	chr3	49002351:49002415:49004557:49004708:49005966:49006014,	49004558	49004708	49004710	49004710	Splice_Site	T	C	p.G180_splice
STAD	TCGA-BR-4292-01	GSK3B	ENST00000264235.8,ENST00000316626.5	chr3	119624601:119624699:119631550:119631657:119634890:119635021,	119631551	119631657	119631658	119631658	Splice_Site	C	G	p.S203_splice
STAD	TCGA-BR-4292-01	PLSCR1	ENST00000462666.1,ENST00000478267.1,ENST00000488253.1,ENST00000463777.1,ENST00000494568.1,ENST00000448787.2,ENST00000469266.1	chr3	146251256:146251337:146254326:146254352:146262253:146262308,	146254327	146254352	146254325	146254325	Splice_Site	A	C	p.N5_splice
STAD	TCGA-BR-4292-01	KCNQ5	ENST00000414165.2,ENST00000403813.2,ENST00000370398.1,ENST00000355194.4,ENST00000355635.3,ENST00000342056.2,ENST00000402622.2	chr6	73900295:73900427:73902287:73902414:73904174:73905137,	73902288	73902414	73902416	73902416	Splice_Site	T	C	p.Q612_splice
STAD	TCGA-BR-4357-01	XIRP2	ENST00000409728.1,ENST00000409756.2,ENST00000295237.9,ENST00000409273.1,ENST00000409195.1,ENST00000420519.1,ENST00000409605.1,ENST00000409043.1	chr2	168074675:168074810:168096364:168096475:168097173:168097246,	168096365	168096475	168096364	168096364	Splice_Site	G	T	p.E287_splice
STAD	TCGA-BR-4361-01	AKR7A2	ENST00000235835.3,ENST00000481966.1,ENST00000330072.5	chr1	19630778:19630880:19632511:19632641:19633495:19633595,	19632512	19632641	19632510	19632510	Splice_Site	A	G	p.Q306_splice
STAD	TCGA-BR-4361-01	CSMD2	ENST00000373381.4,ENST00000241312.4	chr1	34383694:34383902:34401360:34401555:34498194:34498307,	34401361	34401555	34401359	34401359	Splice_Site	A	T	p.A198_splice
STAD	TCGA-BR-4361-01	NLRP3	ENST00000391827.2,ENST00000336119.3,ENST00000391828.3	chr1	247597464:247597575:247599271:247599442:247607273:247607444,	247599272	247599442	247599444	247599444	Splice_Site	T	C	p.G890_splice
STAD	TCGA-BR-4361-01	DIP2C	ENST00000280886.6,ENST00000381496.3	chr10	436679:436803:445048:445159:454865:454957,	445049	445159	445160	445160	Splice_Site	C	A	p.V384_splice
STAD	TCGA-BR-4361-01	CSTF3	ENST00000524827.1,ENST00000323959.4	chr11	33127428:33127463:33127543:33127610:33129448:33129546,	33127544	33127610	33127542	33127542	Splice_Site	A	G	p.Q141_splice
STAD	TCGA-BR-4361-01	DDX47	ENST00000545038.1,ENST00000541537.1,ENST00000426619.2,ENST00000352940.4,ENST00000358007.3	chr12	12967064:12967158:12974141:12974330:12974588:12974660,	12974142	12974330	12974332	12974332	Splice_Site	T	C	p.A124_splice
STAD	TCGA-BR-4361-01	SUCLA2	ENST00000378654.3,ENST00000470760.1	chr13	48563016:48563116:48570977:48571158:48575315:48575376,	48570978	48571158	48570976	48570976	Splice_Site	A	G	p.G91_splice
STAD	TCGA-BR-4361-01	DNAJC17	ENST00000559238.1,ENST00000220496.4	chr15	41068401:41068490:41068739:41068825:41071420:41071508,	41068740	41068825	41068826	41068826	Splice_Site	C	T	p.D99_splice
STAD	TCGA-BR-4361-01	TRPM7	ENST00000313478.7,ENST00000560955.1,ENST00000560638.1	chr15	50897062:50897341:50899396:50899525:50901777:50901921,	50899397	50899525	50899395	50899395	Splice_Site	A	G	p.E903_splice
STAD	TCGA-BR-4361-01	CHRNA5	ENST00000559554.1	chr15	78857912:78858167:78873152:78873304:78878986:78879031,	78873153	78873304	78873306	78873306	Splice_Site	T	C	p.V86_splice
STAD	TCGA-BR-4361-01	TAOK1	ENST00000261716.3	chr17	27834913:27835150:27837881:27838010:27844470:27844674,	27837882	27838010	27838012	27838012	Splice_Site	T	C	p.E568_splice
STAD	TCGA-BR-4361-01	LCLAT1	ENST00000465200.1	chr2	30682417:30682588:30748452:30748621:30755981:30756132,30670141:30670249:30748452:30748621:30755981:30756132,30670111:30670270:30748452:30748621:30755981:30756180,	30748453	30748621	30748623	30748623	Splice_Site	T	C	p.V93_splice
STAD	TCGA-BR-4361-01	KYNU	ENST00000264170.4,ENST00000375773.2,ENST00000409512.1	chr2	143715209:143715284:143718192:143718339:143742652:143742751,	143718193	143718339	143718341	143718341	Splice_Site	T	C	p.K243_splice
STAD	TCGA-BR-4361-01	GRB14	ENST00000488342.1	chr2	165358764:165358845:165364964:165365113:165365251:165365362,	165364965	165365113	165364963	165364963	Splice_Site	A	G	p.K341_splice
STAD	TCGA-BR-4361-01	GRB14	ENST00000543549.1,ENST00000263915.3,ENST00000446413.2	chr2	165358764:165358845:165364964:165365060:165365251:165365362,	165364965	165365060	165364963	165364963	Splice_Site	A	G	p.K341_splice
STAD	TCGA-BR-4361-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2,ENST00000474749.1	chr20	58456491:58456547:58456999:58457057:58457149:58457220,	58457000	58457057	58456998	58456998	Splice_Site	A	G	p.G886_splice
STAD	TCGA-BR-4361-01	ATP6AP2	ENST00000378438.4,ENST00000447485.1,ENST00000544975.1	chrX	40450485:40450617:40456500:40456596:40456778:40456916,	40456501	40456596	40456500	40456500	Splice_Site	G	T	p.A101_splice
STAD	TCGA-BR-4362-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29356911:29356999:29359604:29359757:29362337:29362435,	29359605	29359757	29359759	29359759	Splice_Site	T	C	p.E455_splice
STAD	TCGA-BR-4362-01	LRIG2	ENST00000466161.1,ENST00000361127.5,ENST00000492207.1	chr1	113650215:113650379:113652863:113653184:113655100:113655382,	113652864	113653184	113653186	113653186	Splice_Site	T	C	p.E600_splice
STAD	TCGA-BR-4362-01	PGR	ENST00000534780.1,ENST00000526300.1,ENST00000263463.5	chr11	100962490:100962607:100996737:100996889:100998164:100999801,	100996738	100996889	100996890	100996890	Splice_Site	C	T	p.R546_splice
STAD	TCGA-BR-4362-01	PFDN5	ENST00000550846.1	chr12	53689365:53689423:53691828:53691934:53693052:53693127,	53691829	53691934	53691936	53691936	Splice_Site	T	C	p.A130_splice
STAD	TCGA-BR-4362-01	SRL	ENST00000399609.3,ENST00000537996.1,ENST00000572111.1	chr16	4245553:4245787:4247799:4247916:4253166:4253262,	4247800	4247916	4247798	4247798	Splice_Site	A	G	p.G126_splice
STAD	TCGA-BR-4362-01	PDHB	ENST00000383714.4,ENST00000469364.1,ENST00000461692.1,ENST00000302746.6,ENST00000485460.1	chr3	58413418:58413906:58414199:58414341:58415434:58415526,	58414200	58414341	58414198	58414198	Splice_Site	A	G	p.G312_splice
STAD	TCGA-BR-4362-01	CCDC149	ENST00000389609.4,ENST00000504487.1,ENST00000324309.4	chr4	24839777:24839894:24854693:24854801:24875302:24875341,	24854694	24854801	24854802	24854802	Splice_Site	C	A	p.A89_splice
STAD	TCGA-BR-4362-01	WDR41	ENST00000513917.1	chr5	76758948:76759051:76785281:76785397:76787994:76788020,76760585:76760634:76785281:76785397:76787994:76788020,76760585:76760634:76785281:76785397:76795151:76795461,	76785282	76785397	76785281	76785281	Splice_Site	C	T	p.R56_splice
STAD	TCGA-BR-4362-01	WDR41	ENST00000511036.1	chr5	76760585:76760634:76785281:76785382:76787994:76788020,	76785282	76785382	76785281	76785281	Splice_Site	C	T	p.R56_splice
STAD	TCGA-BR-4362-01	TMCO6	ENST00000537378.1,ENST00000252100.6,ENST00000510336.1,ENST00000509605.1,ENST00000515265.2,ENST00000394671.3	chr5	140022509:140022626:140023148:140023260:140023364:140023497,	140023149	140023260	140023147	140023147	Splice_Site	A	G	p.S269_splice
STAD	TCGA-BR-4362-01	MRPL15	ENST00000260102.4,ENST00000522521.1	chr8	55049827:55049993:55055222:55055346:55059941:55060104,	55055223	55055346	55055348	55055348	Splice_Site	T	C	p.D185_splice
STAD	TCGA-BR-4363-01	TMCO3	ENST00000434316.2	chr13	114174930:114175048:114188359:114188555:114193671:114193797,	114188360	114188555	114188557	114188557	Splice_Site	T	C	p.T513_splice
STAD	TCGA-BR-4368-01	MEAF6	ENST00000373074.1,ENST00000296214.5	chr1	37959534:37959708:37961485:37961519:37967404:37967597,	37961486	37961519	37961520	37961520	Splice_Site	C	T	p.R178_splice
STAD	TCGA-BR-4368-01	PCDH9	ENST00000377865.2,ENST00000544246.1	chr13	67205341:67205543:67477635:67477737:67799536:67802115,	67477636	67477737	67477738	67477738	Splice_Site	C	T	p.C1013_splice
STAD	TCGA-BR-4368-01	WNT10A	ENST00000258411.3	chr2	219746965:219747145:219754705:219755085:219757495:219757868,	219754706	219755085	219754704	219754704	Splice_Site	A	G	p.G126_splice
STAD	TCGA-BR-4368-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2,ENST00000431162.2	chr3	39169824:39169979:39170207:39170423:39170562:39170801,	39170208	39170423	39170206	39170206	Splice_Site	A	G	p.V568_splice
STAD	TCGA-BR-4368-01	IGF2BP3	ENST00000421467.2	chr7	23391124:23391205:23401152:23401216:23458394:23458443,23391124:23391205:23401152:23401216:23508100:23508161,	23401153	23401216	23401218	23401218	Splice_Site	T	C	p.V113_splice
STAD	TCGA-BR-4368-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35310463:35310778:35313895:35313986:35366943:35366990,	35313896	35313986	35313894	35313894	Splice_Site	A	G	p.S359_splice
STAD	TCGA-BR-4370-01	INTS3	ENST00000476843.1,ENST00000435409.2,ENST00000318967.2,ENST00000368670.1,ENST00000481797.1,ENST00000503133.1	chr1	153744271:153744439:153744815:153744916:153745114:153745187,	153744816	153744916	153744815	153744815	Splice_Site	G	A	p.S907_splice
STAD	TCGA-BR-4370-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2,ENST00000360084.5	chr13	77799569:77799689:77807290:77807398:77817193:77817295,	77807291	77807398	77807400	77807400	Splice_Site	T	C	p.G839_splice
STAD	TCGA-BR-4370-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579901	2579901	Splice_Site	G	A	p.L334_splice
STAD	TCGA-BR-6452-01	PRDM2	ENST00000376048.5,ENST00000235372.7,ENST00000311066.5	chr1	14057512:14057612:14059273:14059377:14068499:14068652,	14059274	14059377	14059379	14059379	Splice_Site	T	C	p.E77_splice
STAD	TCGA-BR-6452-01	CAPZB	ENST00000433834.1,ENST00000401084.2,ENST00000375142.1,ENST00000264202.6,ENST00000459967.2,ENST00000375144.1,ENST00000413711.1,ENST00000264203.3	chr1	19683148:19683245:19683915:19684057:19705033:19705147,	19683916	19684057	19683914	19683914	Splice_Site	A	G	p.Q186_splice
STAD	TCGA-BR-6452-01	PHACTR4	ENST00000373836.3,ENST00000373839.3	chr1	28818161:28818299:28819526:28819603:28823045:28823668,	28819527	28819603	28819605	28819605	Splice_Site	T	G	p.R698_splice
STAD	TCGA-BR-6452-01	POMGNT1	ENST00000485714.1,ENST00000371992.1,ENST00000535522.1,ENST00000371984.3,ENST00000396420.3,ENST00000371986.3	chr1	46658571:46658630:46658845:46658887:46658976:46659060,	46658846	46658887	46658844	46658844	Splice_Site	A	G	p.P384_splice
STAD	TCGA-BR-6452-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4	chr1	85124000:85124151:85127880:85128058:85128137:85128213,	85127881	85128058	85128059	85128059	Splice_Site	C	T	p.R250_splice
STAD	TCGA-BR-6452-01	RAP1A	ENST00000369709.3,ENST00000436150.2,ENST00000545460.1,ENST00000356415.1	chr1	112245957:112246098:112246964:112247108:112251770:112251886,	112246965	112247108	112247110	112247110	Splice_Site	T	A	p.E156_splice
STAD	TCGA-BR-6452-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115260577:115260837:115261233:115261366:115262199:115262363,	115261234	115261366	115261368	115261368	Splice_Site	T	C	p.C739_splice
STAD	TCGA-BR-6452-01	PDE4DIP	ENST00000313382.9,ENST00000479369.2	chr1	144866591:144866723:144867920:144868172:144871695:144871881,144866591:144866723:144867920:144868172:144873876:144874029,	144867921	144868172	144867919	144867919	Splice_Site	A	G	p.G1840_splice
STAD	TCGA-BR-6452-01	ILDR2	ENST00000469934.2,ENST00000528703.1,ENST00000271417.3	chr1	166905827:166905974:166908750:166908807:166925969:166926089,	166908751	166908807	166908749	166908749	Splice_Site	A	G	p.E186_splice
STAD	TCGA-BR-6452-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228523491:228523552:228523900:228523971:228524704:228524827,	228523901	228523971	228523973	228523973	Splice_Site	T	C	p.E5513_splice
STAD	TCGA-BR-6452-01	SPAG6	ENST00000313311.6,ENST00000376603.2,ENST00000376624.3,ENST00000538630.1	chr10	22675682:22675888:22676751:22676925:22678088:22678241,	22676752	22676925	22676751	22676751	Splice_Site	G	A	p.H227_splice
STAD	TCGA-BR-6452-01	FANK1	ENST00000368695.1,ENST00000368693.1	chr10	127697622:127697700:127697790:127697835:127697941:127698023,	127697791	127697835	127697837	127697837	Splice_Site	T	C	p.Q324_splice
STAD	TCGA-BR-6452-01	SCUBE2	ENST00000519788.2,ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000520467.1	chr11	9075189:9075306:9077339:9077456:9080849:9080972,	9077340	9077456	9077338	9077338	Splice_Site	A	G	p.D403_splice
STAD	TCGA-BR-6452-01	TSPAN9	ENST00000407263.1,ENST00000537971.1,ENST00000431374.2,ENST00000492305.1,ENST00000011898.5	chr12	3387663:3387778:3388157:3388232:3389547:3389637,	3388158	3388232	3388233	3388233	Splice_Site	G	A	p.K110_splice
STAD	TCGA-BR-6452-01	SLCO1C1	ENST00000545102.1	chr12	20848683:20848741:20858882:20859015:20864319:20864444,	20858883	20859015	20859017	20859017	Splice_Site	T	C	p.Q135_splice
STAD	TCGA-BR-6452-01	FAIM2	ENST00000550195.1	chr12	50290813:50290867:50291301:50291384:50291769:50291873,	50291302	50291384	50291301	50291301	Splice_Site	C	T	p.C127_splice
STAD	TCGA-BR-6452-01	FAIM2	ENST00000320634.3,ENST00000552669.1,ENST00000547871.1,ENST00000550635.2,ENST00000550890.1	chr12	50290813:50290867:50291301:50291366:50291769:50291873,	50291302	50291366	50291301	50291301	Splice_Site	C	T	p.C127_splice
STAD	TCGA-BR-6452-01	TIMELESS	ENST00000553532.1,ENST00000229201.4	chr12	56822019:56822189:56822332:56822436:56822666:56822884,	56822333	56822436	56822332	56822332	Splice_Site	C	T	p.N470_splice
STAD	TCGA-BR-6452-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454773	88454773	Splice_Site	T	C	p.S2120_splice
STAD	TCGA-BR-6452-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109623383:109623545:109625803:109625967:109629417:109629568,	109625804	109625967	109625968	109625968	Splice_Site	G	A	p.S715_splice
STAD	TCGA-BR-6452-01	CPB2	ENST00000439329.3	chr13	46658353:46658478:46661879:46661955:46679070:46679161,	46661880	46661955	46661956	46661956	Splice_Site	C	T	p.S25_splice
STAD	TCGA-BR-6452-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50054354:50054471:50055082:50055252:50056872:50057098,	50055083	50055252	50055082	50055082	Splice_Site	G	A	p.G341_splice
STAD	TCGA-BR-6452-01	ATXN2L	ENST00000325215.6,ENST00000564304.1,ENST00000382686.4,ENST00000395547.2,ENST00000336783.4,ENST00000340394.8,ENST00000563314.1,ENST00000570200.1	chr16	28843836:28843888:28844137:28844208:28844379:28844675,	28844138	28844208	28844210	28844210	Splice_Site	T	C	p.K553_splice
STAD	TCGA-BR-6452-01	CDH11	ENST00000566827.1	chr16	65026817:65026937:65032464:65032759:65087706:65087831,	65032465	65032759	65032464	65032464	Splice_Site	C	G	p.G175_splice
STAD	TCGA-BR-6452-01	NCOR1	ENST00000460276.1	chr17	16068292:16068475:16075116:16075334:16089867:16090001,	16075117	16075334	16075115	16075115	Splice_Site	A	G	p.K145_splice
STAD	TCGA-BR-6452-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000436828.1,ENST00000395851.1,ENST00000585296.1,ENST00000268712.3	chr17	16068292:16068475:16075116:16075309:16089867:16090001,	16075117	16075309	16075115	16075115	Splice_Site	A	G	p.K145_splice
STAD	TCGA-BR-6452-01	CDK5RAP3	ENST00000580391.1,ENST00000584991.1,ENST00000584168.1,ENST00000338399.4,ENST00000583697.1,ENST00000585163.1,ENST00000578663.1,ENST00000536708.2,ENST00000580670.2,ENST00000584063.1,ENST00000580287.1	chr17	46056200:46056283:46057958:46058164:46058528:46058700,	46057959	46058164	46057957	46057957	Splice_Site	A	T	p.L360_splice
STAD	TCGA-BR-6452-01	FDXR	ENST00000544854.1,ENST00000579543.1,ENST00000583917.1,ENST00000455107.2,ENST00000577509.1,ENST00000578473.1,ENST00000413947.2,ENST00000579893.1,ENST00000293195.5,ENST00000442102.2,ENST00000581530.1,ENST00000580492.1,ENST00000581969.1,ENST00000579482.1	chr17	72862330:72862366:72862567:72862690:72862905:72862998,	72862568	72862690	72862566	72862566	Splice_Site	A	G	p.L131_splice
STAD	TCGA-BR-6452-01	FDXR	ENST00000583881.1,ENST00000582944.1,ENST00000581219.1	chr17	72862330:72862366:72862567:72862666:72862905:72862998,	72862568	72862666	72862566	72862566	Splice_Site	A	G	p.L131_splice
STAD	TCGA-BR-6452-01	SAP30BP	ENST00000577292.1,ENST00000580484.1,ENST00000578288.1,ENST00000578354.1,ENST00000583536.1,ENST00000580322.1,ENST00000582022.1,ENST00000584861.1,ENST00000542343.1,ENST00000579864.1	chr17	73663505:73663558:73664595:73664705:73667895:73667943,	73664596	73664705	73664707	73664707	Splice_Site	T	C	p.S72_splice
STAD	TCGA-BR-6452-01	LONP1	ENST00000585374.1,ENST00000590729.1,ENST00000360614.3,ENST00000590558.1,ENST00000593119.1	chr19	5713144:5713264:5714193:5714282:5719714:5719815,	5714194	5714282	5714193	5714193	Splice_Site	C	G	p.S173_splice
STAD	TCGA-BR-6452-01	SMYD1	ENST00000444564.2	chr2	88367380:88367520:88383834:88384011:88387380:88387594,	88383835	88384011	88384012	88384012	Splice_Site	G	C	p.R105_splice
STAD	TCGA-BR-6452-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000233957.1	chr2	103006518:103006677:103010928:103011087:103012990:103013346,	103010929	103011087	103010928	103010928	Splice_Site	G	A	p.D371_splice
STAD	TCGA-BR-6452-01	GLS	ENST00000412247.1	chr2	191818290:191818352:191819309:191819386:191827555:191827884,	191819310	191819386	191819388	191819388	Splice_Site	T	C	p.G597_splice
STAD	TCGA-BR-6452-01	CCDC150	ENST00000389175.4,ENST00000431807.2,ENST00000272831.7,ENST00000469429.1	chr2	197542029:197542085:197559769:197559883:197565832:197565904,	197559770	197559883	197559769	197559769	Splice_Site	G	T	p.V504_splice
STAD	TCGA-BR-6452-01	FN1	ENST00000346544.3,ENST00000323926.6,ENST00000336916.4,ENST00000357009.2,ENST00000345488.5,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216243927:216244040:216245533:216245803:216246934:216247048,	216245534	216245803	216245532	216245532	Splice_Site	A	T	p.A1812_splice
STAD	TCGA-BR-6452-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10625510:10625627:10625790:10625904:10626003:10626117,	10625791	10625904	10625789	10625789	Splice_Site	A	G	p.A743_splice
STAD	TCGA-BR-6452-01	ACSS2	ENST00000477932.1,ENST00000253382.5,ENST00000491533.1,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33508808:33508942:33509132:33509265:33509346:33509403,	33509133	33509265	33509131	33509131	Splice_Site	A	G	p.K426_splice
STAD	TCGA-BR-6452-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42225074:42225162:42232399:42232529:42232822:42232898,	42232400	42232529	42232531	42232531	Splice_Site	T	C	p.D113_splice
STAD	TCGA-BR-6452-01	CHAF1B	ENST00000314103.5	chr21	37775055:37775149:37781058:37781128:37781671:37781763,	37781059	37781128	37781130	37781130	Splice_Site	T	C	p.R276_splice
STAD	TCGA-BR-6452-01	SLC35A5	ENST00000484995.1,ENST00000492406.1,ENST00000494706.1,ENST00000261034.2,ENST00000460615.1	chr3	112289386:112289517:112292735:112292803:112299392:112299406,	112292736	112292803	112292735	112292735	Splice_Site	G	T	p.A121_splice
STAD	TCGA-BR-6452-01	ACTL6A	ENST00000487978.1	chr3	179291156:179291257:179292157:179292255:179293190:179293276,	179292158	179292255	179292257	179292257	Splice_Site	T	C	p.A159_splice
STAD	TCGA-BR-6452-01	CPEB2	ENST00000345451.3,ENST00000382395.3	chr4	15008990:15009210:15018811:15018902:15034784:15034835,	15018812	15018902	15018811	15018811	Splice_Site	G	A	p.D242_splice
STAD	TCGA-BR-6452-01	GABRA2	ENST00000381620.4,ENST00000514090.1,ENST00000506961.1,ENST00000356504.1,ENST00000515082.1,ENST00000510233.1,ENST00000507069.1,ENST00000503806.1,ENST00000510861.1	chr4	46314576:46314733:46334631:46334699:46388090:46388206,	46334632	46334699	46334631	46334631	Splice_Site	C	T	p.M85_splice
STAD	TCGA-BR-6452-01	SLC4A4	ENST00000264485.5,ENST00000340595.3,ENST00000351898.6	chr4	72425809:72425971:72429509:72429606:72432720:72432790,	72429510	72429606	72429508	72429508	Splice_Site	A	G	p.S1034_splice
STAD	TCGA-BR-6452-01	IRF2	ENST00000393593.3	chr4	185320068:185320233:185329311:185329429:185339320:185339367,	185329312	185329429	185329430	185329430	Splice_Site	C	T	p.Q138_splice
STAD	TCGA-BR-6452-01	PJA2	ENST00000361189.2,ENST00000361557.3	chr5	108691615:108691727:108698540:108698723:108704261:108704447,	108698541	108698723	108698724	108698724	Splice_Site	C	A	p.G490_splice
STAD	TCGA-BR-6452-01	CD109	ENST00000422508.2,ENST00000437994.2,ENST00000287097.5	chr6	74476481:74476583:74476670:74476733:74477777:74477954,	74476671	74476733	74476735	74476735	Splice_Site	T	C	p.M499_splice
STAD	TCGA-BR-6452-01	PGM3	ENST00000512866.1,ENST00000506587.1,ENST00000513973.1,ENST00000283977.4	chr6	83885680:83885779:83888391:83888475:83889528:83889686,	83888392	83888475	83888390	83888390	Splice_Site	A	G	p.K343_splice
STAD	TCGA-BR-6452-01	ENPP1	ENST00000360971.2,ENST00000459624.1,ENST00000513998.1	chr6	132189157:132189266:132190497:132190629:132193209:132193241,	132190498	132190629	132190497	132190497	Splice_Site	G	A	p.G425_splice
STAD	TCGA-BR-6452-01	PEX7	ENST00000318471.4,ENST00000541292.1	chr6	137167210:137167319:137187764:137187871:137191027:137191141,	137187765	137187871	137187764	137187764	Splice_Site	G	A	p.G176_splice
STAD	TCGA-BR-6452-01	RFC2	ENST00000470266.1,ENST00000480432.1,ENST00000463194.1,ENST00000055077.3,ENST00000494019.1	chr7	73664068:73664159:73666758:73666828:73668600:73668639,73664068:73664110:73666758:73666828:73668600:73668639,	73666759	73666828	73666758	73666758	Splice_Site	C	T	p.E61_splice
STAD	TCGA-BR-6452-01	CASD1	ENST00000417387.1	chr7	94139379:94139529:94146871:94146968:94156473:94156518,	94146872	94146968	94146970	94146970	Splice_Site	T	C	p.S77_splice
STAD	TCGA-BR-6452-01	LETM2	ENST00000297720.5,ENST00000524874.1,ENST00000530448.1,ENST00000379957.4,ENST00000518883.2,ENST00000523268.2,ENST00000523983.2,ENST00000527710.1	chr8	38261930:38262024:38264463:38264556:38264879:38264981,	38264464	38264556	38264558	38264558	Splice_Site	T	C	p.K390_splice
STAD	TCGA-BR-6452-01	MAMLD1	ENST00000262858.5,ENST00000370401.2,ENST00000358892.3	chrX	149613719:149613878:149631037:149631112:149638016:149638137,	149631038	149631112	149631037	149631037	Splice_Site	G	T	p.G33_splice
STAD	TCGA-BR-6453-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000559274.1,ENST00000429436.2	chr14	103941460:103941547:103946723:103946827:103958113:103958371,	103946724	103946827	103946722	103946722	Splice_Site	A	T	p.S495_splice
STAD	TCGA-BR-6455-01	MTHFD1	ENST00000545908.1,ENST00000555252.1,ENST00000216605.8	chr14	64892736:64892910:64894054:64894191:64896901:64896948,	64894055	64894191	64894054	64894054	Splice_Site	G	C	p.G376_splice
STAD	TCGA-BR-6457-01	AQP8	ENST00000219660.5,ENST00000566125.1	chr16	25232777:25232904:25235682:25235897:25238388:25238523,	25235683	25235897	25235898	25235898	Splice_Site	G	A	p.G201_splice
STAD	TCGA-BR-6565-01	CLCN7	ENST00000382745.4,ENST00000448525.1,ENST00000262318.8	chr16	1504411:1504466:1505134:1505251:1505731:1505796,	1505135	1505251	1505133	1505133	Splice_Site	A	G	p.E366_splice
STAD	TCGA-BR-6565-01	SHC3	ENST00000375830.1,ENST00000375835.4	chr9	91680443:91680495:91686113:91686167:91690023:91690143,	91686114	91686167	91686168	91686168	Splice_Site	C	A	p.I244_splice
STAD	TCGA-BR-6566-01	ILF2	ENST00000368681.1	chr1	153642311:153642354:153642646:153642706:153643393:153643458,	153642647	153642706	153642708	153642708	Splice_Site	T	C	p.R2_splice
STAD	TCGA-BR-6566-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844099	68844099	Splice_Site	G	A	p.L230_splice
STAD	TCGA-BR-6566-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462409	39462409	Splice_Site	G	T	p.V16_splice
STAD	TCGA-BR-6566-01	MET	ENST00000539704.1,ENST00000397752.3,ENST00000318493.6	chr7	116422041:116422151:116423357:116423523:116435708:116435845,	116423358	116423523	116423356	116423356	Splice_Site	A	G	p.M1211_splice
STAD	TCGA-BR-6566-01	NFIB	ENST00000397581.2,ENST00000380934.4,ENST00000397579.2,ENST00000380959.3,ENST00000543693.1,ENST00000380924.1,ENST00000380953.1,ENST00000397575.3	chr9	14120438:14120623:14125630:14125765:14146687:14146806,	14125631	14125765	14125630	14125630	Splice_Site	C	T	p.V354_splice
STAD	TCGA-BR-6706-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000544260.1,ENST00000518792.1,ENST00000381869.3,ENST00000262102.6,ENST00000381861.3,ENST00000517413.1	chr8	17503484:17503648:17504490:17504588:17507354:17507471,	17504491	17504588	17504590	17504590	Splice_Site	T	G	p.V1168_splice
STAD	TCGA-BR-6802-01	RPUSD1	ENST00000007264.2,ENST00000567283.1,ENST00000567114.1,ENST00000565377.1,ENST00000561734.1	chr16	836148:836377:836826:836928:837076:837179,	836827	836928	836929	836929	Splice_Site	C	A	p.G137_splice
STAD	TCGA-BR-6802-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467628:136467801:136473119:136473264:136479493:136479576,	136473120	136473264	136473119	136473119	Splice_Site	G	T	p.H878_splice
STAD	TCGA-BR-6802-01	KAT2B	ENST00000426228.1	chr3	20082189:20082272:20113824:20113951:20136754:20136900,	20113825	20113951	20113953	20113953	Splice_Site	T	C	p.A144_splice
STAD	TCGA-BR-6852-01	KYNU	ENST00000264170.4,ENST00000375773.2,ENST00000409512.1	chr2	143715209:143715284:143718192:143718339:143742652:143742751,	143718193	143718339	143718341	143718341	Splice_Site	T	C	p.K243_splice
STAD	TCGA-BR-6852-01	COL6A3	ENST00000353578.4,ENST00000392003.2,ENST00000295550.4,ENST00000409809.1,ENST00000392004.3,ENST00000347401.3	chr2	238285760:238285987:238287278:238287878:238289557:238290142,	238287279	238287878	238287277	238287277	Splice_Site	A	G	p.E833_splice
STAD	TCGA-BR-6852-01	RNF44	ENST00000504160.1	chr5	175958463:175958631:175959004:175959130:175959366:175959517,	175959005	175959130	175959004	175959004	Splice_Site	C	T	p.Q99_splice
STAD	TCGA-BR-6852-01	RNF44	ENST00000274811.4	chr5	175958463:175958631:175959004:175959194:175959366:175959517,	175959005	175959194	175959004	175959004	Splice_Site	C	T	p.Q99_splice
STAD	TCGA-BR-6852-01	RNF44	ENST00000537487.1,ENST00000513029.1	chr5	175958463:175958631:175959004:175959133:175959366:175959517,	175959005	175959133	175959004	175959004	Splice_Site	C	T	p.Q99_splice
STAD	TCGA-BR-6852-01	ALAS2	ENST00000477869.1,ENST00000396198.3,ENST00000493869.1,ENST00000335854.4	chrX	55046752:55046937:55047484:55047707:55051150:55051273,	55047485	55047707	55047483	55047483	Splice_Site	A	G	p.Q213_splice
STAD	TCGA-BR-6852-01	MTMR8	ENST00000374852.3	chrX	63576055:63576218:63579284:63579407:63615219:63615311,	63579285	63579407	63579408	63579408	Splice_Site	C	G	p.V9_splice
STAD	TCGA-BR-6852-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000334504.7	chrX	107447549:107447642:107448668:107448710:107448889:107448925,	107448669	107448710	107448667	107448667	Splice_Site	A	G	p.K230_splice
STAD	TCGA-BR-7196-01	PLEKHM2	ENST00000375799.3,ENST00000375793.2,ENST00000477849.1	chr1	16058844:16059024:16059106:16059223:16060291:16060610,	16059107	16059223	16059105	16059105	Splice_Site	A	C	p.E936_splice
STAD	TCGA-BR-7196-01	ELMO2	ENST00000290246.6,ENST00000425546.1,ENST00000396391.1,ENST00000439931.2,ENST00000352077.2,ENST00000445496.2,ENST00000372176.1,ENST00000481852.1,ENST00000488853.1,ENST00000467800.1,ENST00000454865.2,ENST00000462491.1	chr20	45003076:45003079:45003174:45003279:45003874:45004009,	45003175	45003279	45003173	45003173	Splice_Site	A	T	p.R390_splice
STAD	TCGA-BR-7197-01	HFM1	ENST00000430465.1	chr1	91781947:91782033:91784849:91784947:91788506:91788554,	91784850	91784947	91784848	91784848	Splice_Site	A	G	p.W894_splice
STAD	TCGA-BR-7703-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15872849:15873056:15882630:15882782:15884764:15884894,	15882631	15882782	15882784	15882784	Splice_Site	T	C	p.S137_splice
STAD	TCGA-BR-7703-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80881109	80881109	Splice_Site	T	C	p.A248_splice
STAD	TCGA-BR-7703-01	SUSD3	ENST00000375469.1	chr9	95831381:95831430:95838065:95838254:95840127:95840275,	95838066	95838254	95838255	95838255	Splice_Site	G	A	p.L93_splice
STAD	TCGA-BR-7707-01	CDC42BPA	ENST00000366767.3	chr1	227288692:227288940:227300012:227300123:227307504:227307638,	227300013	227300123	227300012	227300012	Splice_Site	C	T	p.K667_splice
STAD	TCGA-BR-7707-01	FBXW8	ENST00000455858.2	chr12	117348769:117348962:117365827:117365932:117383168:117383333,	117365828	117365932	117365934	117365934	Splice_Site	T	C	p.Q141_splice
STAD	TCGA-BR-7707-01	WDR90	ENST00000549091.1,ENST00000420061.2,ENST00000293879.4,ENST00000549648.1,ENST00000552943.1	chr16	701826:702039:702466:702535:703340:703451,	702467	702535	702537	702537	Splice_Site	T	C	p.Q374_splice
STAD	TCGA-BR-7707-01	ALG1	ENST00000591822.1,ENST00000588623.1,ENST00000544428.1,ENST00000262374.5	chr16	5129748:5129808:5130946:5131057:5132559:5132674,	5130947	5131057	5130946	5130946	Splice_Site	G	A	p.G321_splice
STAD	TCGA-BR-7707-01	KLHL8	ENST00000425278.2	chr4	88104354:88104541:88116475:88116842:88141569:88141615,	88116476	88116842	88116474	88116474	Splice_Site	A	G	p.K72_splice
STAD	TCGA-BR-7707-01	TTC37	ENST00000503279.1,ENST00000514952.1,ENST00000358746.2	chr5	94865792:94865933:94872520:94872629:94872746:94872811,	94872521	94872629	94872520	94872520	Splice_Site	C	T	p.G251_splice
STAD	TCGA-BR-7707-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101833092:101833151:101837121:101837170:101838786:101838883,	101837122	101837170	101837172	101837172	Splice_Site	T	C	p.Q375_splice
STAD	TCGA-BR-7723-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577156	7577156	Splice_Site	C	T	p.S261_splice
STAD	TCGA-BR-7723-01	CENPH	ENST00000283006.2,ENST00000515001.1,ENST00000502689.1	chr5	68498332:68498396:68498745:68498797:68504022:68504186,	68498746	68498797	68498798	68498798	Splice_Site	G	A	p.Q163_splice
STAD	TCGA-BR-7851-01	PPP1CA	ENST00000376745.4,ENST00000527663.1	chr11	67168329:67168390:67168538:67168670:67169198:67169259,	67168539	67168670	67168671	67168671	Splice_Site	C	T	p.V19_splice
STAD	TCGA-BR-7851-01	LPCAT4	ENST00000314891.6	chr15	34651789:34651946:34652311:34652410:34653600:34653733,	34652312	34652410	34652412	34652412	Splice_Site	T	C	p.D382_splice
STAD	TCGA-BR-7851-01	AMFR	ENST00000492830.1	chr16	56403104:56403239:56419830:56419934:56435644:56435687,	56419831	56419934	56419830	56419830	Splice_Site	C	T	p.M460_splice
STAD	TCGA-BR-7851-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000591529.1,ENST00000426948.2,ENST00000443826.3	chr19	3008866:3008943:3009539:3009700:3011019:3011158,	3009540	3009700	3009702	3009702	Splice_Site	T	C	p.A338_splice
STAD	TCGA-BR-7851-01	HDAC10	ENST00000349505.4,ENST00000216271.5,ENST00000477814.1,ENST00000497952.1,ENST00000498366.1,ENST00000415993.1,ENST00000483222.1,ENST00000448072.1	chr22	50685303:50685395:50686120:50686205:50686318:50686574,	50686121	50686205	50686206	50686206	Splice_Site	C	A	p.R446_splice
STAD	TCGA-BR-7901-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6080879:6080950:6093353:6093527:6138192:6138295,	6093354	6093527	6093528	6093528	Splice_Site	C	A	p.S400_splice
STAD	TCGA-BR-8059-01	SPATA17	ENST00000471021.1	chr1	217975059:217975192:218036115:218036198:218040219:218040930,	218036116	218036198	218036114	218036114	Splice_Site	A	G	p.D336_splice
STAD	TCGA-BR-8059-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000531848.1,ENST00000396253.3	chr11	18319105:18319264:18320338:18320517:18322374:18322463,	18320339	18320517	18320518	18320518	Splice_Site	C	A	p.D329_splice
STAD	TCGA-BR-8059-01	GGT1	ENST00000466310.1,ENST00000425895.1,ENST00000403838.1,ENST00000406383.2,ENST00000401885.1,ENST00000248923.4,ENST00000404532.1,ENST00000400380.1,ENST00000400382.1,ENST00000400383.1	chr22	25024047:25024160:25024241:25024355:25024659:25024806,	25024242	25024355	25024357	25024357	Splice_Site	T	C	p.Q521_splice
STAD	TCGA-BR-8077-01	MYBPC1	ENST00000553190.1,ENST00000360610.2,ENST00000441232.1,ENST00000536007.1,ENST00000550270.1,ENST00000545503.2,ENST00000452455.2	chr12	102008273:102008309:102010979:102011021:102020649:102020688,101988848:101988873:102010979:102011021:102023211:102023322,102008273:102008309:102010979:102011021:102023211:102023322,	102010980	102011021	102010978	102010978	Splice_Site	A	C	p.E21_splice
STAD	TCGA-BR-8078-01	TESK2	ENST00000538496.1,ENST00000372084.1,ENST00000372086.3,ENST00000341771.6	chr1	45820974:45821121:45851583:45851632:45887396:45887518,	45851584	45851632	45851582	45851582	Splice_Site	A	G	p.E131_splice
STAD	TCGA-BR-8078-01	VWF	ENST00000261405.5	chr12	6134745:6134859:6135071:6135212:6138507:6138654,	6135072	6135212	6135070	6135070	Splice_Site	A	G	p.K1036_splice
STAD	TCGA-BR-8078-01	GLI1	ENST00000546141.1,ENST00000543426.1,ENST00000228682.2,ENST00000532291.1,ENST00000528467.1	chr12	57858485:57858651:57858893:57859038:57859389:57859479,	57858894	57859038	57859040	57859040	Splice_Site	T	C	p.Q178_splice
STAD	TCGA-BR-8078-01	IRAK3	ENST00000261233.4,ENST00000457197.2	chr12	66610950:66611015:66620502:66620617:66622031:66622150,	66620503	66620617	66620619	66620619	Splice_Site	T	C	p.V256_splice
STAD	TCGA-BR-8078-01	GZMH	ENST00000216338.4	chr14	25075690:25075952:25076354:25076612:25076817:25076953,	25076355	25076612	25076614	25076614	Splice_Site	T	G	p.L114_splice
STAD	TCGA-BR-8078-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30020140:30020223:30024636:30024732:30024834:30025019,	30024637	30024732	30024733	30024733	Splice_Site	C	T	p.A641_splice
STAD	TCGA-BR-8078-01	MRC2	ENST00000446119.2	chr17	60766218:60766321:60767254:60767423:60767516:60767666,	60767255	60767423	60767425	60767425	Splice_Site	T	C	p.G1248_splice
STAD	TCGA-BR-8078-01	STK11IP	ENST00000295641.10,ENST00000475396.1,ENST00000466648.1,ENST00000456909.1	chr2	220470677:220470781:220470916:220471012:220471197:220471239,	220470917	220471012	220471013	220471013	Splice_Site	G	A	p.G326_splice
STAD	TCGA-BR-8078-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000470525.1,ENST00000485535.1,ENST00000448774.2,ENST00000456774.1,ENST00000358536.4	chr3	48451423:48451486:48451704:48451789:48451863:48451902,	48451705	48451789	48451704	48451704	Splice_Site	C	T	p.R1869_splice
STAD	TCGA-BR-8080-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50655214:50655418:50666408:50666573:50667670:50667802,	50666409	50666573	50666574	50666574	Splice_Site	C	T	p.E116_splice
STAD	TCGA-BR-8081-01	THAP3	ENST00000307896.6,ENST00000487819.1,ENST00000054650.4,ENST00000484669.2	chr1	6690350:6690413:6692450:6692555:6692855:6693181,	6692451	6692555	6692557	6692557	Splice_Site	T	C	p.Q146_splice
STAD	TCGA-BR-8081-01	FES	ENST00000328850.3,ENST00000394302.1,ENST00000464684.1,ENST00000414248.2,ENST00000450438.2,ENST00000444422.2,ENST00000394300.3	chr15	91432535:91432673:91432746:91432866:91433069:91433169,	91432747	91432866	91432867	91432867	Splice_Site	G	A	p.T309_splice
STAD	TCGA-BR-8081-01	ZMYND15	ENST00000269289.6,ENST00000433935.1,ENST00000592813.1	chr17	4647663:4647762:4647919:4648073:4648164:4648223,	4647920	4648073	4647919	4647919	Splice_Site	G	T	p.D523_splice
STAD	TCGA-BR-8284-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156131136:156131309:156132734:156132885:156142616:156142797,	156132735	156132885	156132886	156132886	Splice_Site	G	A	p.S378_splice
STAD	TCGA-BR-8284-01	HTATIP2	ENST00000443524.2,ENST00000419348.2,ENST00000421577.2,ENST00000451739.2	chr11	20388719:20388827:20398125:20398263:20403723:20403785,	20398126	20398263	20398124	20398124	Splice_Site	A	G	p.E102_splice
STAD	TCGA-BR-8284-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4	chr3	196096291:196096382:196098766:196098913:196118683:196118796,	196098767	196098913	196098766	196098766	Splice_Site	C	T	p.Q205_splice
STAD	TCGA-BR-8296-01	RRP12	ENST00000536831.1,ENST00000315563.6,ENST00000370992.4,ENST00000414986.1	chr10	99141142:99141240:99141471:99141583:99144922:99145014,	99141472	99141583	99141471	99141471	Splice_Site	C	G	p.K440_splice
STAD	TCGA-BR-8297-01	PYGL	ENST00000532462.1,ENST00000216392.7,ENST00000544180.2	chr14	51383359:51383452:51383679:51383823:51387258:51387341,	51383680	51383823	51383825	51383825	Splice_Site	T	G	p.F286_splice
STAD	TCGA-BR-8297-01	FAF2	ENST00000261942.6	chr5	175913355:175913490:175915951:175916028:175919194:175919333,	175915952	175916028	175916030	175916030	Splice_Site	T	G	p.R115_splice
STAD	TCGA-BR-8360-01	CHRD	ENST00000470150.1,ENST00000204604.1,ENST00000460627.1,ENST00000448472.1,ENST00000450923.1,ENST00000545352.1,ENST00000420973.1	chr3	184101099:184101206:184101310:184101430:184102324:184102481,	184101311	184101430	184101309	184101309	Splice_Site	A	G	p.V441_splice
STAD	TCGA-BR-8361-01	DHX32	ENST00000284690.3	chr10	127542529:127542772:127548171:127548544:127555558:127555752,	127548172	127548544	127548546	127548546	Splice_Site	T	C	p.R159_splice
STAD	TCGA-BR-8361-01	AFF4	ENST00000477369.1,ENST00000378593.2,ENST00000378595.3,ENST00000265343.5,ENST00000425658.1	chr5	132235278:132235333:132238133:132238179:132240059:132240096,	132238134	132238179	132238133	132238133	Splice_Site	C	T	p.S378_splice
STAD	TCGA-BR-8361-01	AZGP1	ENST00000292401.4	chr7	99564890:99564909:99565777:99566053:99569368:99569629,	99565778	99566053	99565777	99565777	Splice_Site	C	T	p.D205_splice
STAD	TCGA-BR-8361-01	DLG3	ENST00000194900.4,ENST00000461646.1,ENST00000374360.3,ENST00000463252.1,ENST00000542398.1,ENST00000374355.3	chrX	69719814:69719899:69720320:69720430:69720747:69720839,	69720321	69720430	69720431	69720431	Splice_Site	G	A	p.M752_splice
STAD	TCGA-BR-8361-01	CLIC2	ENST00000369449.2,ENST00000465553.1,ENST00000491205.1	chrX	154509250:154509357:154528097:154528223:154528348:154528458,	154528098	154528223	154528224	154528224	Splice_Site	C	T	p.R56_splice
STAD	TCGA-BR-8363-01	LHPP	ENST00000368839.1,ENST00000481452.1,ENST00000392757.4,ENST00000368842.5	chr10	126177031:126177144:126185529:126185593:126186604:126186697,	126185530	126185593	126185528	126185528	Splice_Site	A	G	p.G156_splice
STAD	TCGA-BR-8363-01	PROCA1	ENST00000473751.1,ENST00000578097.1	chr17	27031548:27031634:27031725:27031861:27037888:27038104,27031548:27031634:27031725:27031861:27033697:27033781,	27031726	27031861	27031862	27031862	Splice_Site	C	A	p.G33_splice
STAD	TCGA-BR-8363-01	DMC1	ENST00000478820.1,ENST00000216024.2	chr22	38934543:38934617:38948670:38948712:38951361:38951414,38945929:38946002:38948670:38948712:38951361:38951414,	38948671	38948712	38948670	38948670	Splice_Site	C	T	p.V141_splice
STAD	TCGA-BR-8363-01	B4GALT4	ENST00000480814.1,ENST00000483209.1,ENST00000359213.3,ENST00000393765.2,ENST00000467604.1,ENST00000460321.1	chr3	118937558:118937619:118942904:118943092:118945655:118945888,	118942905	118943092	118943093	118943093	Splice_Site	C	A	p.A163_splice
STAD	TCGA-BR-8363-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336882	56336882	Splice_Site	A	G	p.P146_splice
STAD	TCGA-BR-8368-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109634812:109634958:109637206:109637357:109639371:109639506,	109637207	109637357	109637206	109637206	Splice_Site	G	A	p.S876_splice
STAD	TCGA-BR-8368-01	COL5A2	ENST00000374866.3	chr2	189951451:189951496:189953420:189953498:189957035:189957146,	189953421	189953498	189953419	189953419	Splice_Site	A	G	p.V215_splice
STAD	TCGA-BR-8368-01	MMP11	ENST00000215743.3,ENST00000460352.1,ENST00000477567.1,ENST00000437086.1,ENST00000465385.1	chr22	24122545:24122689:24122768:24122902:24123045:24123194,	24122769	24122902	24122768	24122768	Splice_Site	G	T	p.R161_splice
STAD	TCGA-BR-8368-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000528131.1,ENST00000527816.1,ENST00000356346.3,ENST00000354589.3,ENST00000526416.1,ENST00000357649.2	chr8	145011146:145011239:145011332:145011410:145012318:145012408,	145011333	145011410	145011331	145011331	Splice_Site	A	T	p.Q251_splice
STAD	TCGA-BR-8369-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	T	p.T125_splice
STAD	TCGA-BR-8370-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954269	62954269	Splice_Site	A	T	p.G1137_splice
STAD	TCGA-BR-8370-01	AK7	ENST00000267584.4	chr14	96887158:96887269:96904171:96904252:96909066:96909155,	96904172	96904252	96904253	96904253	Splice_Site	G	A	p.K230_splice
STAD	TCGA-BR-8372-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000474446.1	chr1	182847155:182847308:182848384:182848545:182849631:182849743,	182848385	182848545	182848383	182848383	Splice_Site	A	C	p.R784_splice
STAD	TCGA-BR-8372-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812409	31812409	Splice_Site	C	T	p.P345_splice
STAD	TCGA-BR-8372-01	PLEKHA5	ENST00000355397.3,ENST00000539256.1,ENST00000299275.6,ENST00000538714.1	chr12	19496256:19496368:19498775:19498822:19501332:19501453,	19498776	19498822	19498775	19498775	Splice_Site	G	T	p.G785_splice
STAD	TCGA-BR-8372-01	RCBTB2	ENST00000344532.3,ENST00000430805.2	chr13	49076878:49077050:49084764:49084907:49085905:49086013,	49084765	49084907	49084763	49084763	Splice_Site	A	G	p.R309_splice
STAD	TCGA-BR-8372-01	PKD1	ENST00000472659.1,ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2143670:2143739:2143811:2144014:2144092:2144147,	2143812	2144014	2144016	2144016	Splice_Site	T	C	p.G3540_splice
STAD	TCGA-BR-8372-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5235349:5235447:5238478:5238639:5241313:5241433,	5238479	5238639	5238641	5238641	Splice_Site	T	C	p.K176_splice
STAD	TCGA-BR-8372-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61744345:61744420:61759125:61759259:61762876:61762938,	61759126	61759259	61759260	61759260	Splice_Site	G	A	p.C212_splice
STAD	TCGA-BR-8372-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000467936.1,ENST00000265537.3	chr3	45542032:45542071:45554626:45554727:45557585:45557768,	45554627	45554727	45554625	45554625	Splice_Site	A	C	p.R587_splice
STAD	TCGA-BR-8382-01	ATP6V0A1	ENST00000264649.6,ENST00000393829.2,ENST00000343619.4,ENST00000544137.1,ENST00000537728.1,ENST00000546249.1,ENST00000585525.1	chr17	40650941:40651060:40652724:40652941:40653214:40653322,	40652725	40652941	40652943	40652943	Splice_Site	T	C	p.Q632_splice
STAD	TCGA-BR-8483-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579311	7579311	Splice_Site	C	T	p.T125_splice
STAD	TCGA-BR-8484-01	SULF2	ENST00000361612.4,ENST00000495544.1,ENST00000359930.4,ENST00000484875.1	chr20	46288440:46288474:46290516:46290640:46291813:46291956,	46290517	46290640	46290516	46290516	Splice_Site	C	T	p.G832_splice
STAD	TCGA-BR-8485-01	AMPH	ENST00000428293.2,ENST00000467580.1,ENST00000325590.5,ENST00000441628.1,ENST00000471913.1	chr7	38433669:38433814:38462020:38462077:38466553:38466586,	38462021	38462077	38462019	38462019	Splice_Site	A	G	p.L424_splice
STAD	TCGA-BR-8486-01	ORM1	ENST00000259396.8,ENST00000477456.1	chr9	117086301:117086368:117087069:117087177:117087328:117087432,	117087070	117087177	117087068	117087068	Splice_Site	A	T	p.V110_splice
STAD	TCGA-BR-8487-01	SEMA4A	ENST00000355014.2	chr1	156123397:156123555:156124340:156124508:156126204:156126365,156119809:156119884:156124340:156124508:156126204:156126365,	156124341	156124508	156124510	156124510	Splice_Site	T	C	p.G47_splice
STAD	TCGA-BR-8487-01	PGAP2	ENST00000464906.2,ENST00000278243.4,ENST00000396991.2	chr11	3837418:3837484:3838582:3838765:3845112:3845145,3832496:3832654:3838582:3838765:3845112:3845145,	3838583	3838765	3838582	3838582	Splice_Site	G	T	p.A56_splice
STAD	TCGA-BR-8487-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87024466:87024530:87025512:87025589:87029178:87029277,	87025513	87025589	87025590	87025590	Splice_Site	G	A	p.E359_splice
STAD	TCGA-BR-8487-01	LRRK2	ENST00000416796.1	chr12	40646766:40646818:40653281:40653406:40657590:40657703,	40653282	40653406	40653408	40653408	Splice_Site	T	C	p.G515_splice
STAD	TCGA-BR-8487-01	PCBP2	ENST00000359462.5,ENST00000546652.2,ENST00000455667.3,ENST00000546463.1,ENST00000447282.1,ENST00000541275.1,ENST00000551104.1,ENST00000550192.1,ENST00000359282.5,ENST00000437231.1,ENST00000552980.2,ENST00000552296.2,ENST00000439930.3,ENST00000552819.1,ENST00000549863.1,ENST00000562264.1,ENST00000603815.1,ENST00000548933.1	chr12	53848643:53848653:53849130:53849154:53849244:53849261,	53849131	53849154	53849156	53849156	Splice_Site	T	C	p.K31_splice
STAD	TCGA-BR-8487-01	STX8	ENST00000306357.4,ENST00000574431.1	chr17	9395145:9395238:9408354:9408479:9471687:9471775,9395145:9395238:9408354:9408479:9448488:9448592,	9408355	9408479	9408353	9408353	Splice_Site	A	G	p.E150_splice
STAD	TCGA-BR-8487-01	RAB34	ENST00000484161.1,ENST00000395242.2,ENST00000395243.3,ENST00000583538.1,ENST00000395245.3,ENST00000301043.6,ENST00000447716.1,ENST00000430132.2,ENST00000436730.3,ENST00000415040.2,ENST00000450529.1	chr17	27041690:27041728:27041810:27041918:27042049:27042140,	27041811	27041918	27041919	27041919	Splice_Site	C	T	p.G202_splice
STAD	TCGA-BR-8487-01	CYTH1	ENST00000585509.1,ENST00000361101.4,ENST00000586043.1,ENST00000446868.3,ENST00000590300.1,ENST00000589297.1,ENST00000591455.1,ENST00000589768.1	chr17	76698619:76698686:76704278:76704343:76705731:76705814,	76704279	76704343	76704344	76704344	Splice_Site	C	A	p.R36_splice
STAD	TCGA-BR-8487-01	ERLEC1	ENST00000378239.5,ENST00000185150.4	chr2	54040085:54040210:54041679:54041757:54041996:54042072,	54041680	54041757	54041678	54041678	Splice_Site	A	G	p.R409_splice
STAD	TCGA-BR-8487-01	USP34	ENST00000398571.2	chr2	61520598:61520685:61522083:61522167:61522302:61522425,	61522084	61522167	61522168	61522168	Splice_Site	C	A	p.G1460_splice
STAD	TCGA-BR-8487-01	TBRG4	ENST00000483615.1	chr7	45141451:45141669:45141879:45142090:45142931:45143042,	45141880	45142090	45142092	45142092	Splice_Site	T	C	p.V393_splice
STAD	TCGA-BR-8487-01	TBRG4	ENST00000258770.3,ENST00000361278.3,ENST00000494076.1,ENST00000395655.4,ENST00000495973.1	chr7	45141451:45141669:45141945:45142090:45142931:45143042,	45141946	45142090	45142092	45142092	Splice_Site	T	C	p.V393_splice
STAD	TCGA-BR-8589-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21314574:21314632:21314715:21314823:21319681:21319726,	21314716	21314823	21314715	21314715	Splice_Site	G	A	p.G376_splice
STAD	TCGA-BR-8589-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47142946	47142946	Splice_Site	A	G	p.G1672_splice
STAD	TCGA-BR-8589-01	CADM2	ENST00000407528.2,ENST00000405615.2	chr3	86010618:86010797:86028313:86028433:86114754:86114880,	86028314	86028433	86028312	86028312	Splice_Site	A	G	p.D315_splice
STAD	TCGA-BR-8589-01	SERPINI1	ENST00000472747.2,ENST00000295777.5,ENST00000446050.2	chr3	167508159:167508390:167510377:167510572:167512407:167512467,	167510378	167510572	167510376	167510376	Splice_Site	A	G	p.N161_splice
STAD	TCGA-BR-8589-01	SLC12A2	ENST00000262461.2,ENST00000509205.1,ENST00000343225.4	chr5	127477521:127477673:127483313:127483421:127484445:127484569,	127483314	127483421	127483312	127483312	Splice_Site	A	G	p.V592_splice
STAD	TCGA-BR-8589-01	CDKL3	ENST00000609383.1	chr5	133643828:133644157:133657481:133657594:133706688:133706695,133655048:133655188:133657481:133657594:133706688:133706695,133644264:133644418:133657481:133657594:133706688:133706695,	133657482	133657594	133657596	133657596	Splice_Site	T	C	p.K180_splice
STAD	TCGA-BR-8591-01	PIGK	ENST00000370813.5,ENST00000370812.3,ENST00000487906.1,ENST00000445065.1	chr1	77557886:77558175:77587959:77588044:77620133:77620306,	77587960	77588044	77587958	77587958	Splice_Site	A	C	p.Q357_splice
STAD	TCGA-BR-8591-01	INTS3	ENST00000476843.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000512605.1,ENST00000481797.1,ENST00000503133.1	chr1	153735203:153735323:153735708:153735838:153736307:153736362,	153735709	153735838	153735839	153735839	Splice_Site	G	A	p.S589_splice
STAD	TCGA-BR-8591-01	SETD6	ENST00000310682.2,ENST00000418480.1,ENST00000427443.1,ENST00000422445.1,ENST00000219315.4	chr16	58550105:58550247:58550381:58550576:58550711:58550832,	58550382	58550576	58550381	58550381	Splice_Site	G	A	p.W159_splice
STAD	TCGA-BR-8591-01	DEF8	ENST00000567874.1,ENST00000268676.7,ENST00000570182.1,ENST00000563795.1,ENST00000563594.1,ENST00000569453.1	chr16	90028144:90028272:90028419:90028533:90029770:90029851,	90028420	90028533	90028534	90028534	Splice_Site	G	A	p.R368_splice
STAD	TCGA-BR-8591-01	CACNG7	ENST00000222212.2,ENST00000391767.1	chr19	54418624:54418759:54444723:54444869:54445289:54445640,	54444724	54444869	54444871	54444871	Splice_Site	T	C	p.E190_splice
STAD	TCGA-BR-8591-01	ROCK2	ENST00000401753.1,ENST00000315872.6	chr2	11348412:11348573:11351806:11351966:11354482:11354589,	11351807	11351966	11351805	11351805	Splice_Site	A	G	p.E735_splice
STAD	TCGA-BR-8591-01	CCDC13	ENST00000479576.1,ENST00000310232.6,ENST00000492806.1	chr3	42788748:42788865:42793427:42793517:42794066:42794209,	42793428	42793517	42793519	42793519	Splice_Site	T	C	p.L172_splice
STAD	TCGA-BR-8591-01	WDR27	ENST00000423258.1,ENST00000448612.1,ENST00000333572.6	chr6	170034523:170034621:170036466:170036600:170038634:170038756,	170036467	170036600	170036601	170036601	Splice_Site	C	G	p.G624_splice
STAD	TCGA-BR-8591-01	TECPR1	ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000483740.1,ENST00000490842.1	chr7	97858355:97858478:97860272:97860430:97860535:97860685,	97860273	97860430	97860431	97860431	Splice_Site	C	T	p.L709_splice
STAD	TCGA-BR-8591-01	SMC5	ENST00000361138.5	chr9	72897337:72897499:72901115:72901187:72912881:72913137,	72901116	72901187	72901115	72901115	Splice_Site	G	T	p.A328_splice
STAD	TCGA-BR-8676-01	FRMD3	ENST00000376438.1,ENST00000304195.3	chr9	85987827:85987870:86004518:86004623:86152999:86153353,	86004519	86004623	86004624	86004624	Splice_Site	C	G	p.R50_splice
STAD	TCGA-BR-8680-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109444411:109444567:109445747:109445856:109446746:109446876,	109445748	109445856	109445747	109445747	Splice_Site	G	T	p.R318_splice
STAD	TCGA-BR-8680-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7780583:7780721:7785108:7785222:7786044:7786243,	7785109	7785222	7785224	7785224	Splice_Site	T	C	p.G737_splice
STAD	TCGA-BR-8680-01	MDM1	ENST00000303145.7,ENST00000540418.1,ENST00000411698.2	chr12	68690702:68690762:68696399:68696652:68707222:68707332,	68696400	68696652	68696398	68696398	Splice_Site	A	G	p.V658_splice
STAD	TCGA-BR-8680-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62204810:62205091:62207222:62207345:62207472:62207616,	62207223	62207345	62207347	62207347	Splice_Site	T	C	p.Q553_splice
STAD	TCGA-BR-8680-01	HIF1A	ENST00000555014.1	chr14	62203607:62203827:62207260:62207345:62207472:62207616,	62207261	62207345	62207347	62207347	Splice_Site	T	C	p.Q553_splice
STAD	TCGA-BR-8680-01	TRIP4	ENST00000561265.1,ENST00000558820.1,ENST00000559833.1,ENST00000261884.3,ENST00000557834.1,ENST00000560567.1,ENST00000559565.1	chr15	64686205:64686314:64687596:64687730:64689804:64689934,	64687597	64687730	64687596	64687596	Splice_Site	G	T	p.E91_splice
STAD	TCGA-BR-8680-01	ADAMTSL3	ENST00000567476.1,ENST00000569510.1,ENST00000561483.1,ENST00000565653.1,ENST00000286744.5	chr15	84373140:84373260:84442274:84442402:84473401:84473447,	84442275	84442402	84442274	84442274	Splice_Site	G	T	p.T64_splice
STAD	TCGA-BR-8680-01	BRD7	ENST00000475877.1,ENST00000394689.2,ENST00000394688.3	chr16	50373886:50373997:50383933:50384078:50388335:50388390,	50383934	50384078	50384079	50384079	Splice_Site	C	A	p.R149_splice
STAD	TCGA-BR-8680-01	EIF4A1	ENST00000578495.1	chr17	7478505:7478576:7479847:7480010:7480373:7480428,	7479848	7480010	7480012	7480012	Splice_Site	T	C	p.S172_splice
STAD	TCGA-BR-8680-01	EIF4A1	ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000582746.1,ENST00000577731.1,ENST00000581384.1,ENST00000580888.1,ENST00000577269.1,ENST00000585024.1,ENST00000583802.1	chr17	7477865:7477996:7479841:7480010:7480373:7480428,7478505:7478576:7479841:7480010:7480373:7480428,	7479842	7480010	7480012	7480012	Splice_Site	T	C	p.S172_splice
STAD	TCGA-BR-8680-01	POLDIP2	ENST00000540200.1,ENST00000003607.4	chr17	26674202:26675257:26676108:26676188:26677463:26677589,	26676109	26676188	26676190	26676190	Splice_Site	T	G	p.E305_splice
STAD	TCGA-BR-8680-01	ABCA6	ENST00000284425.2	chr17	67129781:67130008:67130779:67130883:67132232:67132391,	67130780	67130883	67130778	67130778	Splice_Site	A	G	p.E188_splice
STAD	TCGA-BR-8680-01	CYP4F3	ENST00000587360.1,ENST00000591058.1,ENST00000585846.1,ENST00000586182.2,ENST00000221307.8	chr19	15757861:15757915:15758006:15758134:15759969:15760026,	15758007	15758134	15758136	15758136	Splice_Site	T	C	p.H175_splice
STAD	TCGA-BR-8680-01	PSG4	ENST00000433626.2,ENST00000599746.1	chr19	43698660:43698746:43699146:43699425:43702148:43702220,43698660:43698746:43699146:43699425:43708037:43708203,	43699147	43699425	43699426	43699426	Splice_Site	C	T	p.P237_splice
STAD	TCGA-BR-8680-01	KLK3	ENST00000422986.2	chr19	51359594:51359655:51361284:51361342:51361413:51361418,	51361285	51361342	51361284	51361284	Splice_Site	G	A	p.N69_splice
STAD	TCGA-BR-8680-01	SLC30A3	ENST00000233535.4,ENST00000432351.1,ENST00000447008.2,ENST00000426924.1	chr2	27480069:27480220:27480772:27480926:27481028:27481175,	27480773	27480926	27480771	27480771	Splice_Site	A	G	p.L193_splice
STAD	TCGA-BR-8680-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73799388:73800551:73826527:73826648:73827804:73828008,	73826528	73826648	73826650	73826650	Splice_Site	T	G	p.G3891_splice
STAD	TCGA-BR-8680-01	SUCLG1	ENST00000430989.1	chr2	84670407:84670524:84676772:84676876:84686296:84686360,	84676773	84676876	84676772	84676772	Splice_Site	C	T	p.Q67_splice
STAD	TCGA-BR-8680-01	PPP1R7	ENST00000407025.1	chr2	242089052:242089123:242089673:242089962:242092890:242093019,	242089674	242089962	242089964	242089964	Splice_Site	T	C	p.V18_splice
STAD	TCGA-BR-8680-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35124114:35124211:35127601:35127702:35134226:35134290,	35127602	35127702	35127704	35127704	Splice_Site	T	C	p.G242_splice
STAD	TCGA-BR-8680-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50718058:50718205:50718433:50718500:50718917:50719099,	50718434	50718500	50718432	50718432	Splice_Site	A	G	p.K1414_splice
STAD	TCGA-BR-8680-01	ULK4	ENST00000301831.4,ENST00000420927.1	chr3	41954298:41954391:41957468:41957544:41959948:41960032,	41957469	41957544	41957545	41957545	Splice_Site	C	A	p.D243_splice
STAD	TCGA-BR-8680-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281952	142281952	Splice_Site	C	A	p.E98_splice
STAD	TCGA-BR-8680-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56831809:56832025:56835228:56835294:56837435:56837574,	56835229	56835294	56835228	56835228	Splice_Site	G	A	p.K349_splice
STAD	TCGA-BR-8680-01	MAPK10	ENST00000359221.3,ENST00000395161.2,ENST00000395169.3,ENST00000515400.1,ENST00000486985.1,ENST00000361569.2,ENST00000395166.1	chr4	87023094:87023185:87024338:87024397:87028375:87028425,	87024339	87024397	87024399	87024399	Splice_Site	T	G	p.I123_splice
STAD	TCGA-BR-8680-01	CD109	ENST00000422508.2,ENST00000437994.2,ENST00000287097.5	chr6	74528110:74528258:74530184:74530287:74533181:74538037,	74530185	74530287	74530184	74530184	Splice_Site	G	A	p.V1354_splice
STAD	TCGA-BR-8680-01	MYO6	ENST00000430435.1	chr6	76602246:76602407:76604947:76604977:76608089:76608128,76604530:76604557:76604947:76604977:76608089:76608128,76604530:76604557:76604947:76604977:76617321:76617425,	76604948	76604977	76604947	76604947	Splice_Site	G	T	p.R1036_splice
STAD	TCGA-BR-8680-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123210172:123210404:123215733:123216151:123220727:123220800,	123215734	123216151	123215733	123215733	Splice_Site	C	T	p.R931_splice
STAD	TCGA-BR-8680-01	UCK1	ENST00000372215.4,ENST00000372210.3,ENST00000372211.3,ENST00000494584.1	chr9	134400534:134400608:134401315:134401364:134404330:134404425,	134401316	134401364	134401365	134401365	Splice_Site	C	T	p.T202_splice
STAD	TCGA-BR-8680-01	SH3KBP1	ENST00000379726.3,ENST00000494961.1,ENST00000397821.3,ENST00000379697.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19613066:19613118:19626055:19626163:19649981:19650076,	19626056	19626163	19626054	19626054	Splice_Site	A	C	p.N335_splice
STAD	TCGA-BR-8682-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050848	202050848	Splice_Site	G	A	p.R116_splice
STAD	TCGA-BR-8683-01	PDE5A	ENST00000394439.1,ENST00000512450.1,ENST00000513594.1,ENST00000264805.5,ENST00000354960.3	chr4	120440233:120440294:120442089:120442215:120446703:120446850,	120442090	120442215	120442088	120442088	Splice_Site	A	C	p.Q635_splice
STAD	TCGA-BR-8683-01	TAF6	ENST00000453269.2,ENST00000449571.1,ENST00000472509.1,ENST00000344095.4,ENST00000452041.1,ENST00000523306.1,ENST00000493322.1,ENST00000437822.2	chr7	99710469:99710540:99711238:99711392:99711490:99711577,99711023:99711028:99711238:99711392:99711490:99711577,	99711239	99711392	99711237	99711237	Splice_Site	A	G	p.A133_splice
STAD	TCGA-BR-8690-01	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329269	56329269	Splice_Site	C	T	p.R91_splice
STAD	TCGA-BR-A44U-01	GSK3A	ENST00000398249.4,ENST00000453535.1,ENST00000222330.3	chr19	42736208:42736301:42736647:42736834:42737261:42737357,	42736648	42736834	42736836	42736836	Splice_Site	T	C	p.V367_splice
STAD	TCGA-BR-A452-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112102885:112103087:112111325:112111434:112116486:112116600,	112111326	112111434	112111436	112111436	Splice_Site	T	G	p.N177_splice
STAD	TCGA-BR-A4CS-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136096501:136096594:136117590:136117671:136136726:136136814,	136117591	136117671	136117672	136117672	Splice_Site	C	G	p.I733_splice
STAD	TCGA-BR-A4CS-01	ATP6V0D2	ENST00000285393.3	chr8	87111132:87111337:87125937:87126109:87151685:87151864,	87125938	87126109	87125937	87125937	Splice_Site	G	T	p.D44_splice
STAD	TCGA-BR-A4IY-01	AARS2	ENST00000244571.4	chr6	44274016:44274128:44274230:44274269:44274659:44274768,	44274231	44274269	44274230	44274230	Splice_Site	C	G	p.Q396_splice
STAD	TCGA-BR-A4J4-01	HERC5	ENST00000508159.1,ENST00000264350.3	chr4	89390307:89390411:89391764:89391824:89393559:89393653,	89391765	89391824	89391825	89391825	Splice_Site	G	A	p.R433_splice
STAD	TCGA-BR-A4PE-01	DAO	ENST00000547122.1	chr12	109273915:109274000:109278773:109278976:109281225:109281340,109273884:109274000:109278773:109278976:109283244:109283321,	109278774	109278976	109278977	109278977	Splice_Site	G	A	p.A65_splice
STAD	TCGA-BR-A4PF-01	AOX1	ENST00000260930.6	chr2	201527629:201527692:201531409:201531475:201533337:201533526,201527629:201527692:201531409:201531475:201533403:201533526,	201531410	201531475	201531408	201531408	Splice_Site	A	G	p.N1182_splice
STAD	TCGA-BR-A4QL-01	ELOVL1	ENST00000413844.2	chr1	43830598:43830768:43830856:43831047:43831234:43831294,43830598:43830679:43830856:43831047:43831234:43831292,43830408:43830465:43830856:43831047:43831234:43831294,	43830857	43831047	43831048	43831048	Splice_Site	C	T	p.D16_splice
STAD	TCGA-BR-A4QL-01	ELOVL1	ENST00000496932.1	chr1	43830408:43830465:43830598:43831047:43831234:43831294,	43830599	43831047	43831048	43831048	Splice_Site	C	T	p.D16_splice
STAD	TCGA-BR-A4QL-01	SYVN1	ENST00000377190.3	chr11	64897200:64897387:64897473:64897647:64897722:64897761,	64897474	64897647	64897648	64897648	Splice_Site	C	T	p.A412_splice
STAD	TCGA-BR-A4QL-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93205054:93205210:93206755:93206869:93209975:93210176,	93206756	93206869	93206754	93206754	Splice_Site	A	G	p.Q681_splice
STAD	TCGA-BR-A4QL-01	SPPL3	ENST00000543181.1,ENST00000543608.1,ENST00000353487.2,ENST00000540091.1,ENST00000536996.1	chr12	121222276:121222396:121229271:121229360:121248611:121248689,	121229272	121229360	121229361	121229361	Splice_Site	C	A	p.R34_splice
STAD	TCGA-BR-A4QL-01	STX1A	ENST00000395156.3,ENST00000494245.1,ENST00000470878.1,ENST00000222812.3,ENST00000395154.3,ENST00000395155.3,ENST00000496216.1	chr7	73118092:73118158:73118477:73118586:73118679:73118753,	73118478	73118586	73118587	73118587	Splice_Site	C	T	p.H120_splice
STAD	TCGA-CD-5800-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6833538:6833636:6833721:6833744:6833918:6833964,	6833722	6833744	6833745	6833745	Splice_Site	G	A	p.K577_splice
STAD	TCGA-CD-5801-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93593087:93593249:93595809:93596035:93598006:93598158,	93595810	93596035	93596037	93596037	Splice_Site	T	A	p.D549_splice
STAD	TCGA-CD-5801-01	KCNAB1	ENST00000389636.5,ENST00000490337.1,ENST00000302490.8,ENST00000475456.1,ENST00000389634.5,ENST00000477912.1,ENST00000472028.1,ENST00000471742.1	chr3	156139404:156139448:156170687:156170725:156175241:156175321,	156170688	156170725	156170727	156170727	Splice_Site	T	C	p.E119_splice
STAD	TCGA-CD-5813-01	ABCC2	ENST00000370449.4	chr10	101590063:101590190:101590472:101590608:101591367:101591587,	101590473	101590608	101590609	101590609	Splice_Site	G	A	p.K961_splice
STAD	TCGA-CD-5813-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106158510	106158510	Splice_Site	T	C	p.E1137_splice
STAD	TCGA-CD-8525-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61423984:61424080:61432527:61432671:61443853:61444085,	61432528	61432671	61432672	61432672	Splice_Site	C	A	p.S66_splice
STAD	TCGA-CD-8527-01	CC2D1B	ENST00000450942.2	chr1	52825130:52825206:52825376:52825492:52825745:52825905,	52825377	52825492	52825375	52825375	Splice_Site	A	G	p.K314_splice
STAD	TCGA-CD-8527-01	CC2D1B	ENST00000438831.1,ENST00000491136.2,ENST00000371586.2,ENST00000284376.3,ENST00000438021.1	chr1	52825130:52825206:52825376:52825555:52825745:52825868,	52825377	52825555	52825375	52825375	Splice_Site	A	G	p.K314_splice
STAD	TCGA-CD-8527-01	CC2D1B	ENST00000460261.1	chr1	52825130:52825206:52825376:52825508:52825745:52825868,	52825377	52825508	52825375	52825375	Splice_Site	A	G	p.K314_splice
STAD	TCGA-CD-8527-01	AZGP1	ENST00000292401.4	chr7	99564890:99564909:99565777:99566053:99569368:99569629,	99565778	99566053	99565777	99565777	Splice_Site	C	T	p.D205_splice
STAD	TCGA-CD-8527-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75157411	75157411	Splice_Site	C	T	p.G420_splice
STAD	TCGA-CD-8530-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797464	75797464	Splice_Site	C	T	p.G3004_splice
STAD	TCGA-CD-8531-01	RNF8	ENST00000498460.1	chr6	37342395:37342485:37344701:37344809:37358517:37358838,37342395:37342485:37344701:37344809:37348925:37349130,37339287:37339350:37344701:37344809:37358517:37358838,	37344702	37344809	37344811	37344811	Splice_Site	T	G	p.E412_splice
STAD	TCGA-CD-8531-01	GDPD2	ENST00000472623.1	chrX	69645901:69645961:69646220:69646319:69646715:69646861,	69646221	69646319	69646220	69646220	Splice_Site	G	C	p.V122_splice
STAD	TCGA-CD-8534-01	DDB1	ENST00000540166.1,ENST00000539332.1,ENST00000450997.2,ENST00000301764.7	chr11	61071336:61071507:61076454:61076549:61077267:61077432,	61076455	61076549	61076454	61076454	Splice_Site	C	T	p.T887_splice
STAD	TCGA-CD-8535-01	LAMA3	ENST00000399516.3,ENST00000313654.9,ENST00000585600.1	chr18	21355755:21355887:21357520:21357583:21363986:21364121,	21357521	21357583	21357584	21357584	Splice_Site	G	T	p.G490_splice
STAD	TCGA-CD-8536-01	MYOM3	ENST00000330966.7,ENST00000374434.3,ENST00000329601.7	chr1	24400649:24400759:24401808:24401965:24402648:24402763,	24401809	24401965	24401807	24401807	Splice_Site	A	G	p.K953_splice
STAD	TCGA-CD-8536-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121662412:121662521:121663595:121663789:121668552:121668642,	121663596	121663789	121663791	121663791	Splice_Site	T	C	p.E367_splice
STAD	TCGA-CD-8536-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46567250:46567326:46568662:46568846:46569366:46569425,	46568663	46568846	46568662	46568662	Splice_Site	C	T	p.H126_splice
STAD	TCGA-CD-8536-01	SLC38A6	ENST00000525723.2	chr14	61518797:61518853:61519066:61519703:61545527:61545645,	61519067	61519703	61519066	61519066	Splice_Site	G	T	p.A431_splice
STAD	TCGA-CD-8536-01	EVL	ENST00000554695.1	chr14	100602241:100602305:100603914:100603981:100607516:100607566,	100603915	100603981	100603983	100603983	Splice_Site	T	C	p.R342_splice
STAD	TCGA-CD-8536-01	NRBP1	ENST00000460499.1,ENST00000379852.3,ENST00000233557.3,ENST00000379863.3	chr2	27663993:27664047:27664133:27664197:27664433:27664489,	27664134	27664197	27664199	27664199	Splice_Site	T	C	p.N483_splice
STAD	TCGA-CD-8536-01	CPSF1	ENST00000349769.3	chr8	145619602:145619770:145619858:145620011:145620096:145620238,	145619859	145620011	145619858	145619858	Splice_Site	C	T	p.K1189_splice
STAD	TCGA-CD-A486-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67170421:67170535:67170747:67170918:67171546:67171654,	67170748	67170918	67170746	67170746	Splice_Site	A	G	p.L1016_splice
STAD	TCGA-CD-A487-01	POLH	ENST00000372226.1,ENST00000535400.1,ENST00000372236.4	chr6	43568724:43568828:43571628:43571748:43572351:43572475,	43571629	43571748	43571749	43571749	Splice_Site	G	C	p.G295_splice
STAD	TCGA-CD-A4MG-01	NADK	ENST00000492768.1,ENST00000344463.4,ENST00000464373.1,ENST00000460602.1	chr1	1693390:1693474:1696666:1696885:1711343:1711401,1693390:1693474:1696666:1696885:1709727:1709858,	1696667	1696885	1696665	1696665	Splice_Site	A	G	p.R60_splice
STAD	TCGA-CD-A4MG-01	IL12RB2	ENST00000541374.1,ENST00000441640.1,ENST00000371000.1,ENST00000262345.1,ENST00000544434.1	chr1	67793882:67794067:67795269:67795412:67796342:67796493,	67795270	67795412	67795414	67795414	Splice_Site	T	C	p.M269_splice
STAD	TCGA-CD-A4MG-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	154026703:154026883:154027245:154027308:154029290:154029342,	154027246	154027308	154027309	154027309	Splice_Site	C	T	p.V1081_splice
STAD	TCGA-CD-A4MG-01	LEMD1	ENST00000367154.1,ENST00000391936.2	chr1	205385359:205385424:205388357:205388480:205389582:205389702,205350512:205350984:205388357:205388480:205389582:205389702,	205388358	205388480	205388357	205388357	Splice_Site	C	T	p.E69_splice
STAD	TCGA-CD-A4MG-01	POLD3	ENST00000263681.2,ENST00000528481.1,ENST00000527458.1,ENST00000530511.1	chr11	74305105:74305161:74315736:74315839:74322543:74322583,	74315737	74315839	74315840	74315840	Splice_Site	G	A	p.S73_splice
STAD	TCGA-CD-A4MG-01	RPAP1	ENST00000562303.1,ENST00000304330.4	chr15	41812588:41813345:41813935:41814078:41814295:41814448,	41813936	41814078	41813935	41813935	Splice_Site	C	T	p.P1013_splice
STAD	TCGA-CD-A4MG-01	ARL2BP	ENST00000563234.1,ENST00000219204.3	chr16	57279991:57280053:57282448:57282555:57283678:57283764,	57282449	57282555	57282448	57282448	Splice_Site	G	A	p.D34_splice
STAD	TCGA-CD-A4MG-01	ZNF821	ENST00000563827.1	chr16	71895681:71895845:71898040:71898145:71901814:71901940,71894500:71894575:71898040:71898145:71901795:71901940,	71898041	71898145	71898146	71898146	Splice_Site	C	A	p.V105_splice
STAD	TCGA-CD-A4MG-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47888762:47888838:47888921:47889026:47889270:47889446,	47888922	47889026	47889027	47889027	Splice_Site	G	A	p.V704_splice
STAD	TCGA-CD-A4MG-01	EIF4E3	ENST00000448225.1,ENST00000425534.3,ENST00000295612.3,ENST00000497838.1,ENST00000469524.1,ENST00000496214.2,ENST00000389826.3,ENST00000421769.2	chr3	71743047:71743092:71745610:71745671:71748764:71748859,	71745611	71745671	71745673	71745673	Splice_Site	T	G	p.W115_splice
STAD	TCGA-CD-A4MG-01	ZDHHC23	ENST00000498275.1,ENST00000330212.3,ENST00000478793.1	chr3	113672546:113673257:113675185:113675353:113677209:113677385,	113675186	113675353	113675184	113675184	Splice_Site	A	G	p.W291_splice
STAD	TCGA-CD-A4MG-01	FDFT1	ENST00000525283.1	chr8	11660292:11660440:11667300:11667359:11679258:11679327,	11667301	11667359	11667360	11667360	Splice_Site	G	A	p.T127_splice
STAD	TCGA-CD-A4MG-01	FDFT1	ENST00000529464.1	chr8	11660292:11660440:11667175:11667359:11679258:11679327,	11667176	11667359	11667360	11667360	Splice_Site	G	A	p.T127_splice
STAD	TCGA-CD-A4MI-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000524651.1,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000485987.1,ENST00000447038.1	chr13	76397845:76398009:76407186:76407301:76408361:76408523,	76407187	76407301	76407186	76407186	Splice_Site	G	T	p.D751_splice
STAD	TCGA-CD-A4MI-01	TGFB3	ENST00000554980.1,ENST00000238682.3	chr14	76425631:76425688:76427265:76427419:76429658:76429830,	76427266	76427419	76427265	76427265	Splice_Site	C	T	p.T360_splice
STAD	TCGA-CD-A4MI-01	SLC7A6	ENST00000219343.6,ENST00000379152.3,ENST00000566454.1,ENST00000567325.1	chr16	68330266:68330416:68330529:68330713:68331136:68331336,	68330530	68330713	68330529	68330529	Splice_Site	G	A	p.L424_splice
STAD	TCGA-CD-A4MI-01	YIPF4	ENST00000238831.4	chr2	32515558:32515705:32517245:32517417:32523302:32523380,	32517246	32517417	32517418	32517418	Splice_Site	G	A	p.R135_splice
STAD	TCGA-CD-A4MJ-01	ARV1	ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231114891:231115025:231125855:231126009:231131505:231131730,231124065:231124185:231125855:231126009:231131505:231131730,	231125856	231126009	231126011	231126011	Splice_Site	T	C	p.E150_splice
STAD	TCGA-CD-A4MJ-01	SLTM	ENST00000249736.7	chr15	59191001:59191051:59191667:59192082:59193458:59193486,	59191668	59192082	59191666	59191666	Splice_Site	A	G	p.S353_splice
STAD	TCGA-CD-A4MJ-01	SLTM	ENST00000380516.2	chr15	59191001:59191051:59191667:59192136:59193458:59193486,	59191668	59192136	59191666	59191666	Splice_Site	A	G	p.S353_splice
STAD	TCGA-CD-A4MJ-01	UTRN	ENST00000367526.4,ENST00000460618.1,ENST00000367545.3	chr6	145160359:145160420:145161875:145161968:145167940:145167958,	145161876	145161968	145161969	145161969	Splice_Site	G	A	p.P3424_splice
STAD	TCGA-CD-A4MJ-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151153343	151153343	Splice_Site	T	C	p.G1032_splice
STAD	TCGA-CG-4300-01	TMC2	ENST00000496948.1,ENST00000358864.1	chr20	2591064:2591244:2592836:2592986:2593839:2593872,	2592837	2592986	2592836	2592836	Splice_Site	G	A	p.L532_splice
STAD	TCGA-CG-4305-01	NSUN4	ENST00000471871.1,ENST00000474844.1,ENST00000537428.1,ENST00000536062.1,ENST00000495427.1,ENST00000498008.1,ENST00000307089.3	chr1	46818539:46818700:46826375:46826500:46827241:46827666,	46826376	46826500	46826501	46826501	Splice_Site	G	A	p.A293_splice
STAD	TCGA-CG-4305-01	RPAP2	ENST00000610020.1	chr1	92765750:92765796:92767032:92767147:92769533:92769632,	92767033	92767147	92767148	92767148	Splice_Site	G	A	p.C78_splice
STAD	TCGA-CG-4305-01	ADAP2	ENST00000584989.1	chr17	29280305:29280368:29281495:29281573:29283258:29283380,29276304:29276388:29281495:29281573:29283258:29283380,	29281496	29281573	29281495	29281495	Splice_Site	G	A	p.Q269_splice
STAD	TCGA-CG-4305-01	SLC2A9	ENST00000505104.1,ENST00000309065.3,ENST00000506583.1,ENST00000264784.3	chr4	9909858:9909969:9922008:9922196:9943536:9943669,	9922009	9922196	9922008	9922008	Splice_Site	C	G	p.A334_splice
STAD	TCGA-CG-4305-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134128852:134128960:134144055:134144190:134145713:134145822,	134144056	134144190	134144191	134144191	Splice_Site	G	T	p.G2666_splice
STAD	TCGA-CG-4305-01	JAK2	ENST00000381652.3	chr9	4985939:4986022:5021962:5022213:5029782:5029906,	5021963	5022213	5022214	5022214	Splice_Site	G	A	p.G76_splice
STAD	TCGA-CG-4306-01	FGR	ENST00000374005.3,ENST00000374004.1,ENST00000399173.1,ENST00000545953.1,ENST00000374003.3,ENST00000457296.1	chr1	27948163:27948168:27949552:27949655:27950201:27950440,	27949553	27949655	27949552	27949552	Splice_Site	C	T	p.T110_splice
STAD	TCGA-CG-4306-01	COL16A1	ENST00000458715.1	chr1	32140858:32140912:32145232:32145286:32145642:32145702,	32145233	32145286	32145288	32145288	Splice_Site	T	C	p.G907_splice
STAD	TCGA-CG-4306-01	GLB1L2	ENST00000389881.3,ENST00000339772.7	chr11	134201955:134202041:134212647:134212845:134214280:134214349,	134212648	134212845	134212846	134212846	Splice_Site	G	A	p.T95_splice
STAD	TCGA-CG-4306-01	VDAC3	ENST00000022615.4,ENST00000522010.1,ENST00000522069.1,ENST00000520115.1	chr8	42251727:42251796:42252601:42252651:42256229:42256301,	42252602	42252651	42252652	42252652	Splice_Site	G	A	p.V39_splice
STAD	TCGA-CG-4436-01	LIN9	ENST00000460719.1,ENST00000481685.1,ENST00000366801.1	chr1	226474033:226474159:226475364:226475498:226485419:226485514,	226475365	226475498	226475499	226475499	Splice_Site	C	T	p.K105_splice
STAD	TCGA-CG-4437-01	PES1	ENST00000354694.7,ENST00000402281.1,ENST00000402284.3,ENST00000405677.1,ENST00000335214.6	chr22	30976998:30977088:30977320:30977395:30977514:30977631,	30977321	30977395	30977396	30977396	Splice_Site	C	G	p.L250_splice
STAD	TCGA-CG-4438-01	PDLIM1	ENST00000477757.1,ENST00000329399.6	chr10	97006971:97007123:97023620:97023820:97028534:97028619,	97023621	97023820	97023620	97023620	Splice_Site	C	T	p.P178_splice
STAD	TCGA-CG-4441-01	CAMK2G	ENST00000305762.7,ENST00000351293.3,ENST00000423381.1,ENST00000322680.3,ENST00000372765.1,ENST00000433289.1,ENST00000394762.2,ENST00000322635.3	chr10	75612011:75612077:75612949:75613004:75620587:75620612,	75612950	75613004	75612948	75612948	Splice_Site	A	G	p.L84_splice
STAD	TCGA-CG-4442-01	MMEL1	ENST00000288709.6,ENST00000504800.1,ENST00000378412.3,ENST00000502556.1	chr1	2527447:2527546:2527999:2528128:2529645:2529739,	2528000	2528128	2528129	2528129	Splice_Site	C	A	p.A425_splice
STAD	TCGA-CG-4442-01	ZBTB17	ENST00000537142.1,ENST00000471805.1,ENST00000375733.2,ENST00000375743.4	chr1	16270093:16270210:16270302:16270390:16270794:16270853,	16270303	16270390	16270392	16270392	Splice_Site	T	C	p.V458_splice
STAD	TCGA-CG-4442-01	ANK3	ENST00000355288.2,ENST00000511043.1,ENST00000503366.1,ENST00000373820.1,ENST00000373827.2	chr10	61823914:61824046:61827692:61827767:61840294:61840376,	61827693	61827767	61827769	61827769	Splice_Site	T	C	p.G4082_splice
STAD	TCGA-CG-4442-01	PYROXD2	ENST00000370575.4,ENST00000483923.1	chr10	100159858:100160014:100167338:100167412:100167660:100167754,	100167339	100167412	100167414	100167414	Splice_Site	T	G	p.G81_splice
STAD	TCGA-CG-4442-01	ACPP	ENST00000475741.1,ENST00000336375.5,ENST00000351273.7	chr3	132068763:132068846:132071563:132071667:132075529:132075577,	132071564	132071667	132071668	132071668	Splice_Site	G	A	p.G323_splice
STAD	TCGA-CG-4442-01	STK32A	ENST00000398523.3,ENST00000306304.6,ENST00000397936.3	chr5	146741079:146741177:146750216:146750333:146752731:146752857,	146750217	146750333	146750335	146750335	Splice_Site	T	C	p.K259_splice
STAD	TCGA-CG-4442-01	TAF2	ENST00000378164.2	chr8	120816200:120816259:120818522:120818641:120843916:120843971,120816200:120816259:120818522:120818641:120831585:120831746,	120818523	120818641	120818521	120818521	Splice_Site	A	G	p.E140_splice
STAD	TCGA-CG-4442-01	FAM83A	ENST00000276699.6,ENST00000536633.1,ENST00000518448.1,ENST00000521468.1,ENST00000318462.6	chr8	124195397:124195576:124204042:124204210:124206263:124206388,	124204043	124204210	124204041	124204041	Splice_Site	A	G	p.V161_splice
STAD	TCGA-CG-4465-01	AGRN	ENST00000379370.2	chr1	979713:979819:980540:980657:980738:980903,	980541	980657	980540	980540	Splice_Site	G	T	p.G752_splice
STAD	TCGA-CG-4465-01	ZEB1	ENST00000560721.2	chr10	31749965:31750166:31791275:31791437:31799600:31799803,	31791276	31791437	31791274	31791274	Splice_Site	A	G	p.V107_splice
STAD	TCGA-CG-4465-01	CMTM6	ENST00000205636.3	chr3	32525230:32525589:32529429:32529528:32533201:32533378,	32529430	32529528	32529529	32529529	Splice_Site	C	A	p.D106_splice
STAD	TCGA-CG-4466-01	USP21	ENST00000368001.1,ENST00000487163.1,ENST00000368002.3,ENST00000482385.1,ENST00000289865.8	chr1	161132708:161132864:161133344:161133409:161133667:161133712,	161133345	161133409	161133410	161133410	Splice_Site	G	C	p.V371_splice
STAD	TCGA-CG-4476-01	PAK1	ENST00000528203.1,ENST00000356341.3,ENST00000530617.1,ENST00000278568.4	chr11	77064580:77064644:77066712:77066887:77069942:77069998,	77066713	77066887	77066712	77066712	Splice_Site	C	T	p.R258_splice
STAD	TCGA-CG-4476-01	NOMO1	ENST00000287667.7	chr16	14946286:14946439:14947323:14947461:14947793:14947883,	14947324	14947461	14947462	14947462	Splice_Site	G	T	p.V291_splice
STAD	TCGA-CG-5719-01	RBM47	ENST00000510871.1	chr4	40434725:40434879:40438457:40438902:40439787:40440814,	40438458	40438902	40438457	40438457	Splice_Site	C	T	p.V444_splice
STAD	TCGA-CG-5719-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000514014.1	chr4	40434725:40434879:40438457:40438664:40439787:40440814,	40438458	40438664	40438457	40438457	Splice_Site	C	T	p.V444_splice
STAD	TCGA-CG-5721-01	DNAJC6	ENST00000395325.3	chr1	65720144:65720332:65830317:65830468:65831567:65831617,65811293:65811406:65830317:65830468:65831567:65831617,65730446:65730615:65830317:65830468:65831567:65831617,	65830318	65830468	65830470	65830470	Splice_Site	T	C	p.S58_splice
STAD	TCGA-CG-5721-01	REG4	ENST00000354219.1,ENST00000256585.5	chr1	120337099:120337308:120341119:120341225:120342347:120342485,	120341120	120341225	120341118	120341118	Splice_Site	A	G	p.N137_splice
STAD	TCGA-CG-5721-01	MPP7	ENST00000375719.3,ENST00000540098.1,ENST00000337532.5,ENST00000375732.1,ENST00000441595.2,ENST00000496637.2,ENST00000445954.2	chr10	28348578:28348672:28358700:28358781:28378599:28378770,	28358701	28358781	28358700	28358700	Splice_Site	C	T	p.H402_splice
STAD	TCGA-CG-5721-01	CHORDC1	ENST00000320585.6,ENST00000525317.1	chr11	89944382:89944486:89947185:89947343:89948341:89948398,	89947186	89947343	89947184	89947184	Splice_Site	A	G	p.S110_splice
STAD	TCGA-CG-5721-01	TMEM45B	ENST00000527754.1,ENST00000524567.1,ENST00000281441.3	chr11	129722369:129722555:129724504:129724711:129725602:129725787,	129724505	129724711	129724713	129724713	Splice_Site	T	C	p.G129_splice
STAD	TCGA-CG-5721-01	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24995015:24995158:25002719:25002883:25031463:25031583,	25002720	25002883	25002718	25002718	Splice_Site	A	G	p.G225_splice
STAD	TCGA-CG-5721-01	PUS7L	ENST00000551923.1,ENST00000431332.3,ENST00000550784.1,ENST00000416848.2,ENST00000344862.5,ENST00000547156.1	chr12	44132155:44132194:44136259:44136358:44139848:44140041,	44136260	44136358	44136258	44136258	Splice_Site	A	G	p.M454_splice
STAD	TCGA-CG-5721-01	SLC38A2	ENST00000256689.5,ENST00000551374.1,ENST00000548236.1,ENST00000549258.1	chr12	46757706:46757786:46758171:46758339:46758426:46758485,	46758172	46758339	46758170	46758170	Splice_Site	A	T	p.Q291_splice
STAD	TCGA-CG-5721-01	FGD6	ENST00000551521.1,ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95486603:95486621:95488367:95488470:95498782:95498862,	95488368	95488470	95488366	95488366	Splice_Site	A	G	p.E1200_splice
STAD	TCGA-CG-5721-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100930289:100930388:100930725:100930825:100934449:100934596,	100930726	100930825	100930827	100930827	Splice_Site	T	C	p.G321_splice
STAD	TCGA-CG-5721-01	TBX3	ENST00000349155.2	chr12	115115396:115115461:115117309:115117456:115118683:115118951,	115117310	115117456	115117308	115117308	Splice_Site	A	G	p.K288_splice
STAD	TCGA-CG-5721-01	TGDS	ENST00000261296.5,ENST00000498294.1	chr13	95235347:95235490:95243106:95243197:95244494:95244563,	95243107	95243197	95243105	95243105	Splice_Site	A	G	p.D105_splice
STAD	TCGA-CG-5721-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72056089	72056089	Splice_Site	T	C	p.E500_splice
STAD	TCGA-CG-5721-01	IDH3A	ENST00000558602.1,ENST00000559106.1,ENST00000560396.1,ENST00000559889.1,ENST00000559881.1,ENST00000299518.2,ENST00000560667.1,ENST00000559186.1	chr15	78449914:78449973:78452433:78452548:78453922:78453975,	78452434	78452548	78452550	78452550	Splice_Site	T	A	p.G97_splice
STAD	TCGA-CG-5721-01	TOM1L2	ENST00000540946.1	chr17	17754206:17754266:17764789:17764865:17766044:17766094,17752136:17752173:17764789:17764865:17766044:17766094,	17764790	17764865	17764788	17764788	Splice_Site	A	G	p.G426_splice
STAD	TCGA-CG-5721-01	TMEM98	ENST00000394642.3,ENST00000395149.2,ENST00000261713.4,ENST00000579849.1,ENST00000583437.2,ENST00000439138.1,ENST00000583120.1,ENST00000578289.1,ENST00000582227.1	chr17	31258610:31258677:31260191:31260323:31261308:31261326,	31260192	31260323	31260324	31260324	Splice_Site	G	A	p.S88_splice
STAD	TCGA-CG-5721-01	ACE	ENST00000290866.4,ENST00000290863.6,ENST00000577418.1,ENST00000490216.2,ENST00000579409.1,ENST00000579314.1	chr17	61571732:61571831:61573754:61573877:61574158:61574346,	61573755	61573877	61573878	61573878	Splice_Site	G	A	p.A1168_splice
STAD	TCGA-CG-5721-01	RTTN	ENST00000437017.1,ENST00000255674.6,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67776733:67776953:67781680:67781835:67788791:67788936,	67781681	67781835	67781679	67781679	Splice_Site	A	T	p.R1228_splice
STAD	TCGA-CG-5721-01	INSR	ENST00000302850.5	chr19	7142826:7143101:7150507:7150543:7152736:7152938,	7150508	7150543	7150506	7150506	Splice_Site	A	G	p.R756_splice
STAD	TCGA-CG-5721-01	MAP3K10	ENST00000594951.1,ENST00000253055.3	chr19	40711027:40711203:40711817:40712064:40715009:40715109,	40711818	40712064	40712065	40712065	Splice_Site	G	A	p.G479_splice
STAD	TCGA-CG-5721-01	ACVR1C	ENST00000409680.3,ENST00000243349.8	chr2	158406673:158406904:158412604:158412844:158443698:158443929,	158412605	158412844	158412846	158412846	Splice_Site	T	C	p.A102_splice
STAD	TCGA-CG-5721-01	GHRH	ENST00000373614.2,ENST00000237527.3	chr20	35879488:35879634:35882612:35882732:35884796:35884901,	35882613	35882732	35882611	35882611	Splice_Site	A	G	p.S103_splice
STAD	TCGA-CG-5721-01	PDXK	ENST00000398078.3,ENST00000498040.1,ENST00000481512.1,ENST00000490666.1,ENST00000467908.1,ENST00000343528.6,ENST00000472777.1,ENST00000291565.4	chr21	45161547:45161652:45163604:45163688:45165959:45166006,	45163605	45163688	45163690	45163690	Splice_Site	T	C	p.V111_splice
STAD	TCGA-CG-5721-01	PDXK	ENST00000398085.3	chr21	45161547:45161652:45163549:45163688:45165959:45166006,	45163550	45163688	45163690	45163690	Splice_Site	T	C	p.V111_splice
STAD	TCGA-CG-5721-01	UBE2L3	ENST00000496722.1	chr22	21922025:21922060:21947149:21947245:21965145:21965332,21922018:21922666:21947149:21947245:21965145:21965332,	21947150	21947245	21947247	21947247	Splice_Site	T	C	p.P41_splice
STAD	TCGA-CG-5721-01	KCTD17	ENST00000456470.1	chr22	37456862:37456962:37457578:37457669:37458564:37459414,37455352:37455478:37457578:37457669:37458564:37459414,	37457579	37457669	37457578	37457578	Splice_Site	G	T	p.G262_splice
STAD	TCGA-CG-5721-01	RNF13	ENST00000467996.1,ENST00000474348.1,ENST00000459632.1,ENST00000466795.1,ENST00000344229.3,ENST00000392894.3,ENST00000491086.1,ENST00000468648.1,ENST00000490631.1	chr3	149531051:149531140:149589815:149589941:149613259:149613285,149570302:149570383:149589815:149589941:149613259:149613285,	149589816	149589941	149589943	149589943	Splice_Site	T	C	p.K107_splice
STAD	TCGA-CG-5721-01	NPNT	ENST00000305572.8,ENST00000379987.2,ENST00000514622.1,ENST00000504304.1,ENST00000514837.1	chr4	106819057:106819158:106848492:106848585:106858165:106858285,	106848493	106848585	106848587	106848587	Splice_Site	T	C	p.D89_splice
STAD	TCGA-CG-5721-01	KIAA1109	ENST00000495260.1,ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123151085:123151366:123155927:123156178:123159246:123159505,	123155928	123156178	123156180	123156180	Splice_Site	T	C	p.G1192_splice
STAD	TCGA-CG-5721-01	ELL2	ENST00000237853.4	chr5	95242227:95242486:95249474:95249638:95255127:95255249,	95249475	95249638	95249473	95249473	Splice_Site	A	G	p.G161_splice
STAD	TCGA-CG-5721-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143587110	143587110	Splice_Site	G	A	p.R278_splice
STAD	TCGA-CG-5721-01	DPYSL3	ENST00000519672.1,ENST00000343218.5,ENST00000398514.3	chr5	146788290:146788359:146792170:146792251:146793158:146793220,	146792171	146792251	146792252	146792252	Splice_Site	C	T	p.L181_splice
STAD	TCGA-CG-5721-01	TCTE1	ENST00000371505.4	chr6	44247901:44248127:44249846:44250296:44253700:44254090,	44249847	44250296	44250298	44250298	Splice_Site	T	C	p.I283_splice
STAD	TCGA-CG-5721-01	PAXIP1	ENST00000473219.1,ENST00000464717.1,ENST00000404141.1,ENST00000397192.1,ENST00000457196.1	chr7	154747238:154747341:154748933:154749004:154751599:154751643,	154748934	154749004	154748932	154748932	Splice_Site	A	G	p.R850_splice
STAD	TCGA-CG-5721-01	TNFRSF10B	ENST00000347739.3,ENST00000276431.4	chr8	22888282:22888385:22900650:22900756:22926263:22926534,	22900651	22900756	22900649	22900649	Splice_Site	A	G	p.G84_splice
STAD	TCGA-CG-5721-01	DDHD2	ENST00000520272.2,ENST00000397166.2,ENST00000527834.1,ENST00000527415.1,ENST00000532222.1,ENST00000519857.1,ENST00000529642.1	chr8	38090656:38090732:38091911:38092102:38095055:38095103,	38091912	38092102	38092104	38092104	Splice_Site	T	C	p.E137_splice
STAD	TCGA-CG-5721-01	DDHD2	ENST00000528358.1	chr8	38090656:38090732:38091917:38092102:38095055:38095103,	38091918	38092102	38092104	38092104	Splice_Site	T	C	p.E137_splice
STAD	TCGA-CG-5721-01	ZNF7	ENST00000544249.1	chr8	146052967:146052994:146054427:146054475:146062775:146062892,	146054428	146054475	146054477	146054477	Splice_Site	T	C	p.M1_splice
STAD	TCGA-CG-5721-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19080476:19080670:19082870:19083041:19086731:19086780,	19082871	19083041	19083042	19083042	Splice_Site	C	A	p.V234_splice
STAD	TCGA-CG-5721-01	UBQLN1	ENST00000376395.4,ENST00000533705.1,ENST00000257468.7	chr9	86284099:86284242:86292641:86292876:86293355:86293514,	86292642	86292876	86292640	86292640	Splice_Site	A	G	p.A369_splice
STAD	TCGA-CG-5721-01	CACNA1B	ENST00000371357.1,ENST00000371363.1,ENST00000277549.5	chr9	140954105:140954189:140967939:140968056:140968452:140968518,	140967940	140968056	140968057	140968057	Splice_Site	G	A	p.K1597_splice
STAD	TCGA-CG-5721-01	BMX	ENST00000342014.6,ENST00000348343.6,ENST00000357607.2	chrX	15549450:15549530:15552334:15552462:15554475:15554550,	15552335	15552462	15552464	15552464	Splice_Site	T	C	p.G383_splice
STAD	TCGA-CG-5721-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122765538:122765703:122766711:122766891:122767803:122767921,	122766712	122766891	122766892	122766892	Splice_Site	C	A	p.G713_splice
STAD	TCGA-CG-5722-01	NOD2	ENST00000534057.1	chr16	50746104:50746284:50750497:50750581:50753835:50753919,	50750498	50750581	50750497	50750497	Splice_Site	G	C	p.Y821_splice
STAD	TCGA-CG-5723-01	PANK1	ENST00000307534.4	chr10	91359008:91359262:91371452:91371805:91404356:91405215,	91371453	91371805	91371452	91371452	Splice_Site	C	T	p.M352_splice
STAD	TCGA-CG-5723-01	CLPB	ENST00000544683.1,ENST00000535477.1,ENST00000538039.1,ENST00000543042.1	chr11	72069923:72070052:72091324:72091428:72114009:72114082,	72091325	72091428	72091323	72091323	Splice_Site	A	G	p.D216_splice
STAD	TCGA-CG-5723-01	GLB1L2	ENST00000389881.3,ENST00000339772.7	chr11	134201955:134202041:134212647:134212845:134214280:134214349,	134212648	134212845	134212847	134212847	Splice_Site	T	C	p.T95_splice
STAD	TCGA-CG-5723-01	KRT8	ENST00000550170.1	chr12	53293791:53293849:53294371:53295003:53295647:53295731,	53294372	53295003	53295004	53295004	Splice_Site	C	A	p.K178_splice
STAD	TCGA-CG-5723-01	KRT8	ENST00000546826.1,ENST00000548998.1,ENST00000552150.1,ENST00000546900.1,ENST00000293308.6,ENST00000546897.1,ENST00000552551.1,ENST00000549176.1	chr12	53294371:53294467:53294942:53295003:53295647:53295661,	53294943	53295003	53295004	53295004	Splice_Site	C	A	p.K178_splice
STAD	TCGA-CG-5723-01	FSIP1	ENST00000350221.3	chr15	40005644:40005782:40018789:40018948:40030291:40030402,	40018790	40018948	40018788	40018788	Splice_Site	A	G	p.Q350_splice
STAD	TCGA-CG-5723-01	ELMOD3	ENST00000444108.3,ENST00000409890.2,ENST00000409013.3,ENST00000409344.3,ENST00000490508.1,ENST00000446464.3,ENST00000393852.4,ENST00000428955.2,ENST00000315658.7	chr2	85598213:85598332:85598562:85598685:85604466:85604597,	85598563	85598685	85598687	85598687	Splice_Site	T	C	p.G203_splice
STAD	TCGA-CG-5723-01	IWS1	ENST00000295321.4	chr2	128247407:128247519:128249546:128249664:128250856:128250986,	128249547	128249664	128249666	128249666	Splice_Site	T	C	p.L644_splice
STAD	TCGA-CG-5723-01	WIPF1	ENST00000392546.2,ENST00000359761.3,ENST00000392547.2,ENST00000409891.1,ENST00000272746.5	chr2	175431804:175431911:175432588:175432801:175436403:175437174,	175432589	175432801	175432803	175432803	Splice_Site	T	C	p.G377_splice
STAD	TCGA-CG-5723-01	ZNF334	ENST00000347606.4	chr20	45133252:45133379:45140720:45140779:45142048:45142193,	45140721	45140779	45140720	45140720	Splice_Site	C	T	p.Q7_splice
STAD	TCGA-CG-5723-01	DDX27	ENST00000371764.4,ENST00000493252.1,ENST00000484427.1	chr20	47842966:47843072:47845251:47845425:47846735:47846886,	47845252	47845425	47845427	47845427	Splice_Site	T	C	p.G325_splice
STAD	TCGA-CG-5723-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2,ENST00000277165.6	chr9	96259752:96259881:96261071:96261168:96277948:96278049,	96261072	96261168	96261170	96261170	Splice_Site	T	C	p.A344_splice
STAD	TCGA-CG-5724-01	PFKFB2	ENST00000545806.1,ENST00000411990.2,ENST00000367080.3,ENST00000367079.2	chr1	207242768:207242873:207243624:207243754:207244853:207244918,207242768:207242873:207243624:207243754:207244532:207244595,	207243625	207243754	207243623	207243623	Splice_Site	A	C	p.S365_splice
STAD	TCGA-CG-5726-01	PEX14	ENST00000356607.4,ENST00000491661.2	chr1	10596269:10596354:10659294:10659423:10678388:10678474,	10659295	10659423	10659294	10659294	Splice_Site	G	T	p.G57_splice
STAD	TCGA-CG-5726-01	FAF1	ENST00000371778.4	chr1	51267302:51267349:51323600:51323669:51425438:51425525,	51323601	51323669	51323599	51323599	Splice_Site	A	G	p.V38_splice
STAD	TCGA-CG-5726-01	CDNF	ENST00000378442.1,ENST00000466269.1,ENST00000465530.1	chr10	14861978:14862157:14867477:14867619:14870143:14870204,	14867478	14867619	14867476	14867476	Splice_Site	A	G	p.E129_splice
STAD	TCGA-CG-5726-01	PSMC3	ENST00000524447.2	chr11	47444483:47444524:47445659:47445734:47445979:47446042,	47445660	47445734	47445735	47445735	Splice_Site	C	A	p.G152_splice
STAD	TCGA-CG-5726-01	PSMC3	ENST00000531051.2	chr11	47444483:47444524:47445596:47445734:47445979:47446042,47444483:47444524:47445596:47445734:47446157:47446262,	47445597	47445734	47445735	47445735	Splice_Site	C	A	p.G152_splice
STAD	TCGA-CG-5726-01	CSRP2	ENST00000547435.1,ENST00000311083.5,ENST00000546966.1	chr12	77253326:77253420:77254063:77254193:77256955:77257124,	77254064	77254193	77254062	77254062	Splice_Site	A	G	p.K137_splice
STAD	TCGA-CG-5726-01	ARFGAP3	ENST00000437119.2,ENST00000263245.5,ENST00000429508.2,ENST00000453516.1	chr22	43218275:43218415:43219661:43219708:43222945:43223005,	43219662	43219708	43219661	43219661	Splice_Site	C	T	p.G224_splice
STAD	TCGA-CG-5726-01	REXO4	ENST00000371942.3,ENST00000494045.1	chr9	136276123:136276193:136277418:136277612:136277897:136278041,	136277419	136277612	136277417	136277417	Splice_Site	A	G	p.G304_splice
STAD	TCGA-CG-5727-01	TCF7	ENST00000522653.1	chr5	133477906:133477995:133478411:133478791:133479282:133479331,	133478412	133478791	133478792	133478792	Splice_Site	G	A	p.Y342_splice
STAD	TCGA-CG-5728-01	UBE2J2	ENST00000473215.1,ENST00000400929.2,ENST00000466752.1,ENST00000435198.1,ENST00000360466.2,ENST00000450390.2,ENST00000349431.6,ENST00000339385.6,ENST00000348298.7,ENST00000400930.4,ENST00000471154.1,ENST00000347370.2	chr1	1192501:1192510:1192587:1192690:1198725:1198766,	1192588	1192690	1192586	1192586	Splice_Site	A	G	p.R92_splice
STAD	TCGA-CG-5728-01	KDELC2	ENST00000375648.1,ENST00000323468.5,ENST00000434945.2,ENST00000530529.1	chr11	108350027:108350222:108351906:108352103:108352732:108352785,	108351907	108352103	108351905	108351905	Splice_Site	A	G	p.K366_splice
STAD	TCGA-CG-5728-01	CPB2	ENST00000439329.3	chr13	46658353:46658478:46661879:46661955:46679070:46679161,	46661880	46661955	46661878	46661878	Splice_Site	A	G	p.E50_splice
STAD	TCGA-CG-5728-01	UGGT2	ENST00000491509.1,ENST00000376747.3	chr13	96519592:96519677:96529532:96529618:96529951:96530110,	96529533	96529618	96529620	96529620	Splice_Site	T	C	p.G1130_splice
STAD	TCGA-CG-5728-01	SPTLC3	ENST00000399002.2	chr20	13090758:13090864:13098152:13098372:13107237:13107364,	13098153	13098372	13098152	13098152	Splice_Site	G	A	p.S311_splice
STAD	TCGA-CG-5728-01	BBS9	ENST00000354265.4,ENST00000242067.6,ENST00000465037.1,ENST00000350941.3,ENST00000433714.1,ENST00000425508.2,ENST00000396127.2,ENST00000355070.2	chr7	33192312:33192463:33195249:33195314:33217089:33217187,	33195250	33195314	33195315	33195315	Splice_Site	G	A	p.G110_splice
STAD	TCGA-CG-5733-01	SCNN1D	ENST00000400928.3,ENST00000325425.8,ENST00000379101.4,ENST00000379099.3,ENST00000379116.5,ENST00000338555.2	chr1	1223318:1223417:1225650:1225768:1225856:1225935,	1225651	1225768	1225650	1225650	Splice_Site	G	T	p.A391_splice
STAD	TCGA-CG-5733-01	GALNT2	ENST00000543760.1,ENST00000494106.1,ENST00000541865.1,ENST00000366672.4	chr1	230371759:230371858:230372098:230372166:230372405:230372471,	230372099	230372166	230372168	230372168	Splice_Site	T	C	p.P181_splice
STAD	TCGA-CG-5733-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236713970:236714290:236715298:236715407:236716880:236717039,	236715299	236715407	236715409	236715409	Splice_Site	T	C	p.V2080_splice
STAD	TCGA-CG-5733-01	KLHDC2	ENST00000298307.5,ENST00000555443.1,ENST00000553579.1,ENST00000554115.1	chr14	50247420:50247493:50249087:50249175:50249259:50249312,	50249088	50249175	50249176	50249176	Splice_Site	G	T	p.A348_splice
STAD	TCGA-CG-5733-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63848788:63848875:63851161:63851289:63856329:63856449,	63851162	63851289	63851161	63851161	Splice_Site	C	T	p.P401_splice
STAD	TCGA-CG-5733-01	DOT1L	ENST00000398665.3,ENST00000452696.1,ENST00000609690.1	chr19	2191082:2191239:2193687:2193782:2194513:2194548,	2193688	2193782	2193687	2193687	Splice_Site	G	A	p.G165_splice
STAD	TCGA-CG-5733-01	LAMA5	ENST00000252999.3	chr20	60903296:60903501:60903899:60904111:60904193:60904309,	60903900	60904111	60904112	60904112	Splice_Site	C	T	p.S1412_splice
STAD	TCGA-CG-5733-01	TXNRD2	ENST00000474308.1,ENST00000535882.1,ENST00000400521.1,ENST00000400519.1,ENST00000400518.1,ENST00000494454.1,ENST00000400525.1,ENST00000334363.9,ENST00000491939.1,ENST00000542719.1	chr22	19886571:19886591:19898899:19898970:19902736:19902799,	19898900	19898970	19898899	19898899	Splice_Site	C	T	p.T221_splice
STAD	TCGA-CG-5734-01	SND1	ENST00000354725.3	chr7	127724775:127724899:127725762:127725832:127726989:127727103,	127725763	127725832	127725833	127725833	Splice_Site	G	A	p.N768_splice
STAD	TCGA-D7-6518-01	SEC24A	ENST00000398844.2	chr5	134041016:134041127:134044402:134044578:134050713:134050851,	134044403	134044578	134044579	134044579	Splice_Site	G	T	p.Q909_splice
STAD	TCGA-D7-6520-01	VPS36	ENST00000475375.1	chr13	53013232:53013303:53016511:53016580:53024633:53024757,	53016512	53016580	53016581	53016581	Splice_Site	C	G	p.I33_splice
STAD	TCGA-D7-6522-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1	chr16	68846037:68846166:68847215:68847398:68849417:68849662,	68847216	68847398	68847399	68847399	Splice_Site	G	T	p.K440_splice
STAD	TCGA-D7-6524-01	SLC37A3	ENST00000326232.9,ENST00000447932.2,ENST00000473060.1,ENST00000460560.1	chr7	140035176:140035239:140037083:140037149:140043211:140043330,140035271:140035304:140037083:140037149:140043211:140043289,	140037084	140037149	140037083	140037083	Splice_Site	C	T	p.M464_splice
STAD	TCGA-D7-6525-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511426	20511426	Splice_Site	T	C	p.G117_splice
STAD	TCGA-D7-6528-01	MACROD2	ENST00000217246.4,ENST00000378058.3,ENST00000310348.4,ENST00000402914.1	chr20	15843449:15843471:15866408:15866456:15913920:15913983,	15866409	15866456	15866408	15866408	Splice_Site	G	C	p.D243_splice
STAD	TCGA-D7-6817-01	PHTF2	ENST00000422959.2,ENST00000248550.7,ENST00000416283.2,ENST00000450574.1	chr7	77522924:77522981:77523298:77523310:77530027:77530097,	77523299	77523310	77523312	77523312	Splice_Site	T	G	p.L72_splice
STAD	TCGA-D7-6822-01	YLPM1	ENST00000549293.1	chr14	75287759:75287840:75295915:75296046:75301967:75302150,	75295916	75296046	75296047	75296047	Splice_Site	G	A	p.R2098_splice
STAD	TCGA-D7-8572-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589663	67589663	Splice_Site	G	A	p.Q475_splice
STAD	TCGA-D7-8573-01	PCSK5	ENST00000545128.1,ENST00000376767.3,ENST00000376752.4	chr9	78686641:78686814:78710805:78711018:78722166:78722267,	78710806	78711018	78711019	78711019	Splice_Site	G	A	p.I369_splice
STAD	TCGA-D7-8574-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842326:68842470:68842595:68842751:68844099:68844165,	68842596	68842751	68842595	68842595	Splice_Site	G	T	p.I178_splice
STAD	TCGA-D7-A4YT-01	COL9A2	ENST00000482722.1,ENST00000372748.3,ENST00000466267.1	chr1	40768461:40768481:40768802:40768857:40769201:40769348,	40768803	40768857	40768858	40768858	Splice_Site	C	G	p.G517_splice
STAD	TCGA-D7-A4YT-01	IL17RA	ENST00000319363.6	chr22	17565946:17566119:17577951:17577976:17578686:17578833,	17577952	17577976	17577950	17577950	Splice_Site	A	T	p.G47_splice
STAD	TCGA-D7-A4YV-01	NAV2	ENST00000540292.1,ENST00000527559.2,ENST00000396087.3	chr11	20077314:20077503:20078075:20078174:20083852:20083905,	20078076	20078174	20078176	20078176	Splice_Site	T	C	p.V1667_splice
STAD	TCGA-D7-A4YV-01	DARS	ENST00000264161.4,ENST00000537273.1,ENST00000489964.1	chr2	136668951:136669063:136670055:136670136:136672038:136672081,	136670056	136670136	136670055	136670055	Splice_Site	C	T	p.P410_splice
STAD	TCGA-D7-A4YV-01	WDR19	ENST00000502389.1,ENST00000503697.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3,ENST00000506503.1	chr4	39187345:39187437:39188158:39188224:39191275:39191401,	39188159	39188224	39188158	39188158	Splice_Site	G	T	p.G33_splice
STAD	TCGA-D7-A4YV-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119491270:119491375:119495677:119495802:119567910:119568099,	119495678	119495802	119495677	119495677	Splice_Site	C	T	p.G841_splice
STAD	TCGA-D7-A4YY-01	TTC12	ENST00000393020.1,ENST00000464224.1,ENST00000529221.1,ENST00000478125.1,ENST00000527362.1,ENST00000483239.2,ENST00000314756.3,ENST00000494714.1	chr11	113221992:113222021:113222791:113222929:113230084:113230183,	113222792	113222929	113222930	113222930	Splice_Site	G	A	p.L482_splice
STAD	TCGA-D7-A4YY-01	ORM1	ENST00000259396.8,ENST00000477456.1	chr9	117086301:117086368:117087069:117087177:117087328:117087432,	117087070	117087177	117087179	117087179	Splice_Site	T	C	p.A146_splice
STAD	TCGA-EQ-A4SO-01	CBFB	ENST00000290858.6,ENST00000563939.2,ENST00000412916.2,ENST00000561924.2	chr16	67070541:67070658:67100584:67100701:67116115:67116200,	67100585	67100701	67100583	67100583	Splice_Site	A	C	p.V95_splice
STAD	TCGA-EQ-A4SO-01	UBE2S	ENST00000264552.9	chr19	55913081:55913130:55915655:55915846:55918182:55918330,	55915656	55915846	55915847	55915847	Splice_Site	C	G	p.E51_splice
STAD	TCGA-F1-6177-01	DSTYK	ENST00000367161.3	chr1	205117332:205117467:205119807:205119922:205126400:205126514,205111632:205116873:205119807:205119922:205126400:205126514,	205119808	205119922	205119923	205119923	Splice_Site	C	T	p.L785_splice
STAD	TCGA-F1-6177-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70956623:70956887:70960214:70960484:70963454:70963718,	70960215	70960484	70960486	70960486	Splice_Site	T	C	p.V994_splice
STAD	TCGA-F1-6874-01	THRA	ENST00000394121.4,ENST00000578218.1,ENST00000546243.1,ENST00000264637.4,ENST00000584985.1,ENST00000450525.2	chr17	38233123:38233191:38233760:38233861:38240087:38240119,	38233761	38233861	38233862	38233862	Splice_Site	G	A	p.K74_splice
STAD	TCGA-F1-6874-01	SRPRB	ENST00000466636.1,ENST00000494297.1,ENST00000466490.2,ENST00000481356.1	chr3	133529967:133530043:133534433:133534570:133535721:133535776,	133534434	133534570	133534433	133534433	Splice_Site	G	T	p.G137_splice
STAD	TCGA-F1-6874-01	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31322883	31322883	Splice_Site	C	T	p.G338_splice
STAD	TCGA-F1-6874-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148454074:148454242:148456395:148456446:148456639:148456730,	148456396	148456446	148456394	148456394	Splice_Site	A	G	p.L162_splice
STAD	TCGA-F1-A448-01	MASP2	ENST00000400897.3	chr1	11094884:11094963:11097749:11097868:11102931:11103079,	11097750	11097868	11097870	11097870	Splice_Site	T	C	p.A297_splice
STAD	TCGA-F1-A448-01	MBNL1	ENST00000324210.5,ENST00000282486.6,ENST00000282488.7,ENST00000355460.2	chr3	151986751:151986881:152017193:152018156:152132729:152132897,	152017194	152018156	152018157	152018157	Splice_Site	G	C	p.K58_splice
STAD	TCGA-F1-A448-01	GAK	ENST00000505819.1	chr4	905817:905962:906522:906582:907394:907456,	906523	906582	906522	906522	Splice_Site	C	T	p.M89_splice
STAD	TCGA-F1-A448-01	BTN2A2	ENST00000469230.1,ENST00000495632.1,ENST00000356709.4,ENST00000490025.1,ENST00000352867.2,ENST00000416795.2,ENST00000482536.1,ENST00000432533.2	chr6	26390330:26390439:26390914:26390935:26391030:26391057,	26390915	26390935	26390936	26390936	Splice_Site	G	A	p.R318_splice
STAD	TCGA-F1-A448-01	ELP3	ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000542181.1,ENST00000537665.1,ENST00000523687.1,ENST00000524103.1,ENST00000520110.1,ENST00000519261.1,ENST00000521015.1	chr8	27989794:27989921:27995214:27995408:28013458:28013549,	27995215	27995408	27995410	27995410	Splice_Site	T	C	p.R367_splice
STAD	TCGA-FP-7829-01	L3MBTL4	ENST00000284898.6,ENST00000400105.2	chr18	5969391:5969561:6046726:6046753:6080879:6080950,	6046727	6046753	6046755	6046755	Splice_Site	T	C	p.V482_splice
STAD	TCGA-FP-7998-01	HMCN1	ENST00000271588.4,ENST00000367492.2,ENST00000414277.1	chr1	186151299:186151419:186157014:186157141:186158643:186158797,	186157015	186157141	186157143	186157143	Splice_Site	T	C	p.G5514_splice
STAD	TCGA-FP-8210-01	SLC28A2	ENST00000347644.3	chr15	45562392:45562474:45564492:45564591:45564870:45564982,	45564493	45564591	45564491	45564491	Splice_Site	A	G	p.T550_splice
STAD	TCGA-FP-A4BE-01	DPYD	ENST00000370192.3	chr1	97915614:97915779:97981281:97981497:98015115:98015204,	97981282	97981497	97981499	97981499	Splice_Site	T	C	p.S509_splice
STAD	TCGA-FP-A4BE-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32446927:32447080:32458630:32459056:32480394:32481489,	32458631	32459056	32458629	32458629	Splice_Site	A	G	p.V194_splice
STAD	TCGA-FP-A4BE-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132476717:132476775:132479411:132479501:132489621:132489729,	132479412	132479501	132479502	132479502	Splice_Site	G	A	p.A943_splice
STAD	TCGA-FP-A4BE-01	ANXA5	ENST00000296511.5,ENST00000515017.1,ENST00000511552.1,ENST00000501272.2	chr4	122593687:122593781:122599048:122599105:122599569:122599649,	122599049	122599105	122599047	122599047	Splice_Site	A	G	p.Q177_splice
STAD	TCGA-HF-7132-01	RAVER2	ENST00000371072.4,ENST00000294428.3	chr1	65270673:65270788:65272888:65273157:65278420:65278532,	65272889	65273157	65272888	65272888	Splice_Site	G	A	p.T458_splice
STAD	TCGA-HF-7132-01	MMAB	ENST00000541763.2,ENST00000542390.1,ENST00000537496.1,ENST00000536760.1,ENST00000545712.2	chr12	110002923:110002981:110006574:110006668:110011151:110011285,110002923:110002981:110006574:110006668:110009453:110009515,	110006575	110006668	110006573	110006573	Splice_Site	A	G	p.G97_splice
STAD	TCGA-HF-7132-01	CLPTM1	ENST00000587537.1,ENST00000588855.1,ENST00000546079.1,ENST00000541297.2,ENST00000337392.5	chr19	45477803:45477854:45480599:45480717:45488475:45488561,	45480600	45480717	45480718	45480718	Splice_Site	G	T	p.M196_splice
STAD	TCGA-HF-7132-01	SLC6A18	ENST00000296821.4,ENST00000324642.3	chr5	1232865:1233003:1235595:1235777:1238064:1238175,	1235596	1235777	1235779	1235779	Splice_Site	T	C	p.K207_splice
STAD	TCGA-HF-7132-01	LARP1	ENST00000336314.4	chr5	154183099:154183305:154183760:154183867:154185440:154185592,	154183761	154183867	154183869	154183869	Splice_Site	T	C	p.S849_splice
STAD	TCGA-HJ-7597-01	ACADM	ENST00000526129.1,ENST00000541113.1,ENST00000370834.5,ENST00000420607.2,ENST00000532509.1,ENST00000526196.1,ENST00000370841.4	chr1	76198537:76198607:76200475:76200556:76205664:76205795,76199212:76199313:76200475:76200556:76205664:76205795,	76200476	76200556	76200474	76200474	Splice_Site	A	G	p.Q130_splice
STAD	TCGA-HJ-7597-01	TERF2	ENST00000603068.1,ENST00000254942.3	chr16	69395306:69395392:69400709:69401102:69402278:69402385,	69400710	69401102	69400708	69400708	Splice_Site	A	G	p.K405_splice
STAD	TCGA-HJ-7597-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000593407.1,ENST00000599857.1,ENST00000595904.1	chr19	50916759:50916778:50916998:50917136:50918071:50918247,	50916999	50917136	50916998	50916998	Splice_Site	G	T	p.V751_splice
STAD	TCGA-HJ-7597-01	EIF4E	ENST00000507665.1,ENST00000450253.2,ENST00000505992.1,ENST00000280892.6,ENST00000504432.1,ENST00000511644.1	chr4	99809039:99809103:99812387:99812483:99823026:99823133,	99812388	99812483	99812387	99812387	Splice_Site	C	T	p.A74_splice
STAD	TCGA-HJ-7597-01	GFPT2	ENST00000253778.8	chr5	179731771:179731939:179734175:179734303:179739429:179739544,	179734176	179734303	179734305	179734305	Splice_Site	T	C	p.E516_splice
STAD	TCGA-HJ-7597-01	SOBP	ENST00000317357.5,ENST00000477448.1	chr6	107824860:107824999:107827445:107827631:107854662:107854814,	107827446	107827631	107827633	107827633	Splice_Site	T	C	p.E141_splice
STAD	TCGA-HJ-7597-01	COL27A1	ENST00000356083.3,ENST00000494090.2	chr9	117064361:117064388:117066887:117066953:117068799:117068968,	117066888	117066953	117066886	117066886	Splice_Site	A	G	p.Q1625_splice
STAD	TCGA-HJ-7597-01	RALGDS	ENST00000372062.3,ENST00000393160.3,ENST00000424572.1,ENST00000372047.3,ENST00000471109.1,ENST00000372050.3,ENST00000469972.1,ENST00000542690.1,ENST00000493438.1,ENST00000393157.3,ENST00000482648.1	chr9	135978165:135978287:135978616:135978649:135979133:135979220,	135978617	135978649	135978616	135978616	Splice_Site	C	T	p.K597_splice
STAD	TCGA-HU-8243-01	RBL1	ENST00000373664.3	chr20	35624751:35627332:35632104:35632269:35635813:35635962,	35632105	35632269	35632270	35632270	Splice_Site	C	G	p.M958_splice
STAD	TCGA-HU-8245-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984671	11984671	Splice_Site	A	G	p.I73_splice
STAD	TCGA-HU-8245-01	IRF2	ENST00000393593.3,ENST00000510814.1,ENST00000507523.1,ENST00000505067.1	chr4	185329358:185329429:185339320:185339367:185339685:185339744,	185339321	185339367	185339369	185339369	Splice_Site	T	A	p.G122_splice
STAD	TCGA-HU-8602-01	SLC25A45	ENST00000294187.6,ENST00000524438.1,ENST00000533629.1,ENST00000530936.1,ENST00000398802.1,ENST00000525944.1,ENST00000527174.1,ENST00000526259.1,ENST00000417511.2,ENST00000529962.1,ENST00000526898.1	chr11	65146928:65147032:65147337:65147409:65147602:65147646,	65147338	65147409	65147336	65147336	Splice_Site	A	G	p.S51_splice
STAD	TCGA-HU-8602-01	TMEM106C	ENST00000547682.1	chr12	48360465:48360515:48360990:48361044:48361915:48361954,48360465:48360515:48360990:48361044:48362038:48362271,	48360991	48361044	48361046	48361046	Splice_Site	T	C	p.R219_splice
STAD	TCGA-HU-8602-01	KCTD10	ENST00000537165.1	chr12	109895434:109895487:109895796:109895886:109898440:109898610,	109895797	109895886	109895795	109895795	Splice_Site	A	G	p.K158_splice
STAD	TCGA-HU-8602-01	KCTD10	ENST00000542858.1	chr12	109895434:109895487:109895796:109895853:109898440:109898610,	109895797	109895853	109895795	109895795	Splice_Site	A	G	p.K158_splice
STAD	TCGA-HU-8602-01	KCTD10	ENST00000538161.1,ENST00000540411.1,ENST00000228495.6	chr12	109895434:109895487:109895796:109895883:109898440:109898610,	109895797	109895883	109895795	109895795	Splice_Site	A	G	p.K158_splice
STAD	TCGA-HU-8602-01	KCTD10	ENST00000541077.1	chr12	109895434:109895487:109895796:109895989:109898440:109898610,	109895797	109895989	109895795	109895795	Splice_Site	A	G	p.K158_splice
STAD	TCGA-HU-8602-01	MKS1	ENST00000581761.1,ENST00000393120.2,ENST00000337050.7,ENST00000546108.1,ENST00000585134.1,ENST00000313863.6,ENST00000577824.1,ENST00000537529.2,ENST00000393119.2	chr17	56288019:56288085:56288340:56288383:56289738:56289795,	56288341	56288383	56288385	56288385	Splice_Site	T	C	p.T306_splice
STAD	TCGA-HU-8602-01	UPP1	ENST00000421046.1	chr7	48141420:48141579:48142893:48143008:48146469:48146679,48141420:48141467:48142893:48143008:48146469:48146679,48141420:48141579:48142893:48143008:48143378:48143588,	48142894	48143008	48142893	48142893	Splice_Site	G	A	p.H108_splice
STAD	TCGA-HU-8602-01	POLR3D	ENST00000397802.4,ENST00000306433.4,ENST00000517789.1	chr8	22105993:22106162:22106556:22106822:22107587:22107672,	22106557	22106822	22106824	22106824	Splice_Site	T	C	p.R307_splice
STAD	TCGA-HU-8602-01	LYPLA1	ENST00000519926.1,ENST00000316963.3,ENST00000517297.1,ENST00000521352.1	chr8	54974813:54974884:54978307:54978373:55013467:55013499,54975887:54975935:54978307:54978373:55013467:55013499,	54978308	54978373	54978307	54978307	Splice_Site	C	T	p.A56_splice
STAD	TCGA-HU-8602-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000526832.1,ENST00000356994.2	chr8	144874160:144874303:144874389:144874575:144874654:144874801,	144874390	144874575	144874388	144874388	Splice_Site	A	G	p.R1505_splice
STAD	TCGA-HU-8602-01	SCRIB	ENST00000525051.1	chr8	144874160:144874303:144874389:144874571:144874654:144874801,	144874390	144874571	144874388	144874388	Splice_Site	A	G	p.R1505_splice
STAD	TCGA-HU-8602-01	MAMLD1	ENST00000262858.5,ENST00000370401.2,ENST00000426613.2	chrX	149639693:149639762:149671543:149671787:149678231:149678316,149641951:149642074:149671543:149671787:149678231:149678316,	149671544	149671787	149671788	149671788	Splice_Site	G	C	p.A762_splice
STAD	TCGA-HU-A4G2-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189856212:189856257:189856394:189856448:189856909:189856954,	189856395	189856448	189856394	189856394	Splice_Site	G	T	p.G300_splice
STAD	TCGA-HU-A4G8-01	TACC2	ENST00000334433.3,ENST00000369005.1	chr10	123892123:123892249:123903086:123903221:123954554:123954660,	123903087	123903221	123903223	123903223	Splice_Site	T	C	p.R1945_splice
STAD	TCGA-HU-A4G8-01	TFCP2	ENST00000549867.1,ENST00000257915.5,ENST00000548108.1	chr12	51501018:51501129:51502903:51503056:51504659:51504766,	51502904	51503056	51502902	51502902	Splice_Site	A	G	p.K239_splice
STAD	TCGA-HU-A4G8-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669173	95669173	Splice_Site	A	G	p.Q837_splice
STAD	TCGA-HU-A4G8-01	KCNQ5	ENST00000414165.2,ENST00000403813.2,ENST00000370398.1,ENST00000355194.4,ENST00000355635.3,ENST00000342056.2,ENST00000402622.2	chr6	73900295:73900427:73902287:73902414:73904174:73905137,	73902288	73902414	73902287	73902287	Splice_Site	G	A	p.R570_splice
STAD	TCGA-HU-A4G9-01	MST1R	ENST00000463789.1,ENST00000411578.2,ENST00000296474.3,ENST00000434765.1,ENST00000440292.1,ENST00000344206.4	chr3	49928629:49928739:49928831:49929013:49929190:49929271,	49928832	49929013	49929015	49929015	Splice_Site	T	C	p.R1118_splice
STAD	TCGA-HU-A4GF-01	KANK1	ENST00000382289.2,ENST00000382303.1,ENST00000382286.1,ENST00000382293.3,ENST00000382297.2,ENST00000489369.1	chr9	740791:740934:742204:742405:744490:744589,	742205	742405	742406	742406	Splice_Site	G	A	p.N1299_splice
STAD	TCGA-HU-A4GH-01	ZNF143	ENST00000532577.1,ENST00000526657.1,ENST00000438144.2	chr11	9482603:9482623:9492852:9492967:9494223:9494263,	9492853	9492967	9492969	9492969	Splice_Site	T	C	p.D38_splice
STAD	TCGA-HU-A4GH-01	ZNF143	ENST00000299606.2,ENST00000530463.1,ENST00000396602.2,ENST00000496276.1	chr11	9482603:9482623:9492848:9492967:9494223:9494263,	9492849	9492967	9492969	9492969	Splice_Site	T	C	p.D38_splice
STAD	TCGA-HU-A4GH-01	BACE1	ENST00000530824.1,ENST00000428381.2,ENST00000445823.2,ENST00000513780.1,ENST00000392937.6,ENST00000510630.1,ENST00000313005.6	chr11	117161659:117161765:117162427:117162529:117163769:117163904,	117162428	117162529	117162426	117162426	Splice_Site	A	T	p.S314_splice
STAD	TCGA-HU-A4GH-01	BCKDK	ENST00000394950.3,ENST00000484226.2,ENST00000287507.3,ENST00000394951.1,ENST00000567530.1,ENST00000219794.6,ENST00000566568.1	chr16	31121424:31121445:31121525:31121645:31121721:31121820,	31121526	31121645	31121524	31121524	Splice_Site	A	T	p.I142_splice
STAD	TCGA-HU-A4GH-01	SAP30BP	ENST00000584240.1,ENST00000355423.3,ENST00000583536.1,ENST00000581207.1,ENST00000579877.1,ENST00000580322.1,ENST00000293208.9,ENST00000583063.1,ENST00000580601.1,ENST00000584667.1	chr17	73698559:73698651:73699887:73699939:73700835:73700848,73699390:73699451:73699887:73699939:73700835:73700848,	73699888	73699939	73699940	73699940	Splice_Site	G	A	p.A201_splice
STAD	TCGA-HU-A4GN-01	ATP6V0D1	ENST00000564788.1	chr16	67473176:67473254:67477001:67477081:67487446:67487618,	67477002	67477081	67477083	67477083	Splice_Site	T	G	p.A161_splice
STAD	TCGA-HU-A4GN-01	CDC25C	ENST00000503022.1,ENST00000513970.1,ENST00000510119.1,ENST00000323760.6	chr5	137654907:137655063:137661709:137661743:137664172:137664218,137661503:137661593:137661709:137661743:137664172:137664218,	137661710	137661743	137661709	137661709	Splice_Site	C	T	p.P123_splice
STAD	TCGA-HU-A4GN-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1	chr8	51449237:51449368:51465609:51465739:51503438:51503477,	51465610	51465739	51465608	51465608	Splice_Site	A	G	p.R227_splice
STAD	TCGA-HU-A4GN-01	SNX31	ENST00000311812.2	chr8	101642554:101642619:101648124:101648239:101661501:101661576,	101648125	101648239	101648123	101648123	Splice_Site	A	G	p.V86_splice
STAD	TCGA-HU-A4GP-01	CASP4	ENST00000529183.1	chr11	104820387:104820504:104825473:104825728:104839245:104839274,	104825474	104825728	104825729	104825729	Splice_Site	C	T	p.E3_splice
STAD	TCGA-HU-A4GQ-01	EFCAB2	ENST00000473686.1,ENST00000391837.3,ENST00000425550.1,ENST00000487845.1,ENST00000551317.1,ENST00000366521.3,ENST00000366522.2,ENST00000447569.2,ENST00000497591.1,ENST00000549220.1,ENST00000366523.1	chr1	245222687:245222760:245245384:245245464:245246743:245246786,	245245385	245245464	245245466	245245466	Splice_Site	T	A	p.K224_splice
STAD	TCGA-HU-A4GQ-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000524495.1,ENST00000530582.1,ENST00000533792.1	chr11	7670030:7670142:7670377:7670466:7670762:7670885,	7670378	7670466	7670467	7670467	Splice_Site	G	A	p.V666_splice
STAD	TCGA-HU-A4GQ-01	PPP1R14B	ENST00000542235.1,ENST00000309318.3,ENST00000392210.2	chr11	64012020:64012294:64012401:64012434:64012675:64012755,	64012402	64012434	64012400	64012400	Splice_Site	A	G	p.E125_splice
STAD	TCGA-HU-A4GQ-01	ITGA3	ENST00000320031.8,ENST00000007722.7,ENST00000507771.1,ENST00000506827.1,ENST00000505306.1	chr17	48154763:48154811:48155409:48155489:48155570:48155648,	48155410	48155489	48155490	48155490	Splice_Site	G	A	p.T740_splice
STAD	TCGA-HU-A4GQ-01	FN3KRP	ENST00000573158.1	chr17	80674662:80674772:80680679:80680762:80684355:80684369,	80680680	80680762	80680764	80680764	Splice_Site	T	C	p.Q156_splice
STAD	TCGA-HU-A4GQ-01	TPRKB	ENST00000272424.5,ENST00000318190.7,ENST00000409716.2	chr2	73957016:73957156:73957686:73957863:73959289:73959412,	73957687	73957863	73957865	73957865	Splice_Site	T	A	p.I89_splice
STAD	TCGA-HU-A4GQ-01	TIGIT	ENST00000481065.1,ENST00000383671.3,ENST00000486257.1	chr3	114012874:114012969:114014391:114014721:114018443:114018550,	114014392	114014721	114014391	114014391	Splice_Site	G	T	p.G21_splice
STAD	TCGA-HU-A4GQ-01	STK10	ENST00000176763.5	chr5	171509964:171510088:171517235:171517366:171520415:171520581,	171517236	171517366	171517367	171517367	Splice_Site	C	A	p.D519_splice
STAD	TCGA-HU-A4GQ-01	WDR91	ENST00000344400.5,ENST00000466182.1,ENST00000423565.1,ENST00000354475.4	chr7	134877982:134878151:134878329:134878424:134879685:134879836,	134878330	134878424	134878329	134878329	Splice_Site	C	T	p.R497_splice
STAD	TCGA-HU-A4GT-01	HCFC2	ENST00000229330.4	chr12	104476490:104476679:104480624:104480792:104481763:104481816,	104480625	104480792	104480794	104480794	Splice_Site	T	C	p.G411_splice
STAD	TCGA-HU-A4GT-01	NEO1	ENST00000261908.6,ENST00000560262.1,ENST00000339362.5	chr15	73566151:73566346:73570471:73570540:73575304:73575452,73567032:73567065:73570471:73570540:73575304:73575452,	73570472	73570540	73570470	73570470	Splice_Site	A	G	p.A1065_splice
STAD	TCGA-HU-A4GT-01	SF3B3	ENST00000302516.5,ENST00000563739.1	chr16	70598967:70599173:70599270:70599427:70601313:70601439,	70599271	70599427	70599269	70599269	Splice_Site	A	G	p.S890_splice
STAD	TCGA-HU-A4GT-01	CEP192	ENST00000511820.2,ENST00000510237.1,ENST00000506447.1,ENST00000430049.2,ENST00000325971.8,ENST00000589596.1	chr18	13056629:13056697:13057583:13057732:13059080:13059212,	13057584	13057732	13057734	13057734	Splice_Site	T	C	p.K1419_splice
STAD	TCGA-HU-A4GT-01	PASK	ENST00000358649.4,ENST00000405260.1,ENST00000544142.1,ENST00000403638.3,ENST00000493544.1,ENST00000234040.4,ENST00000539818.1	chr2	242054457:242054592:242054702:242054828:242062146:242062314,	242054703	242054828	242054701	242054701	Splice_Site	A	G	p.K1066_splice
STAD	TCGA-HU-A4GT-01	PSORS1C1	ENST00000548049.1	chr6	31093515:31093616:31097345:31097422:31101329:31101471,	31097346	31097422	31097424	31097424	Splice_Site	T	C	p.D5_splice
STAD	TCGA-HU-A4GT-01	COL12A1	ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75875222:75875495:75884753:75885026:75887378:75887651,	75884754	75885026	75884752	75884752	Splice_Site	A	G	p.E904_splice
STAD	TCGA-HU-A4GT-01	BLVRA	ENST00000265523.4,ENST00000402924.1	chr7	43840063:43840171:43843274:43843446:43846575:43846938,	43843275	43843446	43843448	43843448	Splice_Site	T	C	p.S211_splice
STAD	TCGA-HU-A4GT-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150771125:150771380:150771485:150771575:150771761:150771928,	150771486	150771575	150771577	150771577	Splice_Site	T	C	p.Q960_splice
STAD	TCGA-HU-A4GT-01	CPSF1	ENST00000531727.1,ENST00000349769.3,ENST00000526271.1	chr8	145618913:145619011:145619097:145619253:145619327:145619375,	145619098	145619253	145619255	145619255	Splice_Site	T	C	p.A1287_splice
STAD	TCGA-HU-A4GT-01	ROR2	ENST00000375708.3	chr9	94519717:94519841:94538022:94538100:94712148:94712188,	94538023	94538100	94538101	94538101	Splice_Site	C	A	p.G33_splice
STAD	TCGA-HU-A4GT-01	TRO	ENST00000319167.8,ENST00000445561.1,ENST00000375022.4,ENST00000173898.7	chrX	54948650:54948724:54949010:54950201:54950883:54950988,	54949011	54950201	54949009	54949009	Splice_Site	A	G	p.G16_splice
STAD	TCGA-HU-A4GU-01	INPP5B	ENST00000373026.1,ENST00000373023.2,ENST00000373027.1,ENST00000373024.3	chr1	38328011:38328102:38329983:38330095:38331432:38331560,	38329984	38330095	38330097	38330097	Splice_Site	T	C	p.V839_splice
STAD	TCGA-HU-A4GU-01	FHOD3	ENST00000592128.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34298519:34298678:34310608:34310767:34320618:34320801,	34310609	34310767	34310607	34310607	Splice_Site	A	C	p.K948_splice
STAD	TCGA-HU-A4GU-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143096040	143096040	Splice_Site	T	C	p.G331_splice
STAD	TCGA-HU-A4GX-01	CD6	ENST00000346437.4,ENST00000344931.5,ENST00000352009.5,ENST00000452451.2,ENST00000313421.7,ENST00000344028.5	chr11	60776005:60776317:60777043:60777346:60778541:60778607,	60777044	60777346	60777348	60777348	Splice_Site	T	C	p.A362_splice
STAD	TCGA-HU-A4GX-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39713791:39713815:39716469:39716684:39719640:39719695,	39716470	39716684	39716468	39716468	Splice_Site	A	G	p.I1224_splice
STAD	TCGA-HU-A4GX-01	LRRK1	ENST00000284395.5,ENST00000531270.1,ENST00000388948.3,ENST00000526457.2	chr15	101601375:101601493:101602778:101602895:101605556:101606410,	101602779	101602895	101602777	101602777	Splice_Site	A	C	p.D1600_splice
STAD	TCGA-HU-A4GX-01	XAB2	ENST00000534844.1,ENST00000358368.4	chr19	7685160:7685332:7685432:7685555:7685731:7685922,	7685433	7685555	7685556	7685556	Splice_Site	C	A	p.V658_splice
STAD	TCGA-HU-A4GX-01	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000473086.2,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42490267:42490381:42492087:42492291:42492469:42492529,	42492088	42492291	42492087	42492087	Splice_Site	C	T	p.N119_splice
STAD	TCGA-HU-A4GX-01	OSBP2	ENST00000453621.1,ENST00000535268.1,ENST00000452656.1,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31285166:31285221:31285476:31285623:31286714:31286952,	31285477	31285623	31285625	31285625	Splice_Site	T	C	p.P541_splice
STAD	TCGA-HU-A4GX-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113351602	113351602	Splice_Site	A	G	p.N301_splice
STAD	TCGA-HU-A4GX-01	SLCO6A1	ENST00000379807.3,ENST00000506729.1	chr5	101811425:101811497:101813379:101813565:101815880:101816138,	101813380	101813565	101813379	101813379	Splice_Site	C	T	p.G268_splice
STAD	TCGA-HU-A4GX-01	SLCO6A1	ENST00000505407.1	chr5	101811425:101811497:101813379:101813394:101815880:101816138,	101813380	101813394	101813379	101813379	Splice_Site	C	T	p.G268_splice
STAD	TCGA-HU-A4GX-01	AP4M1	ENST00000445208.1	chr7	99699502:99699591:99700297:99700404:99701031:99701068,	99700298	99700404	99700406	99700406	Splice_Site	T	C	p.R85_splice
STAD	TCGA-HU-A4GX-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148454074:148454242:148456395:148456446:148456639:148456730,	148456396	148456446	148456448	148456448	Splice_Site	T	C	p.Q178_splice
STAD	TCGA-HU-A4GY-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000507921.1,ENST00000414217.1	chr5	102489551:102489638:102490373:102490449:102490537:102490647,	102490374	102490449	102490450	102490450	Splice_Site	G	T	p.Q431_splice
STAD	TCGA-HU-A4H3-01	RERE	ENST00000476556.1,ENST00000337907.3,ENST00000377464.1,ENST00000400908.2	chr1	8414685:8415180:8415478:8415659:8416159:8416306,	8415479	8415659	8415661	8415661	Splice_Site	T	G	p.G1496_splice
STAD	TCGA-HU-A4H3-01	RELA	ENST00000525658.1,ENST00000529389.1,ENST00000406246.3,ENST00000533546.1,ENST00000532999.1,ENST00000531484.1,ENST00000308639.9,ENST00000525693.1	chr11	65425900:65425970:65426188:65426293:65427136:65427214,	65426189	65426293	65426295	65426295	Splice_Site	T	C	p.R187_splice
STAD	TCGA-HU-A4H3-01	KNTC1	ENST00000333479.7	chr12	123060089:123060193:123060346:123060446:123061441:123061576,	123060347	123060446	123060345	123060345	Splice_Site	A	G	p.K829_splice
STAD	TCGA-HU-A4H3-01	RFX2	ENST00000359161.3,ENST00000592546.1,ENST00000592281.1,ENST00000586940.1,ENST00000592883.1,ENST00000587181.1,ENST00000303657.5,ENST00000592473.1,ENST00000593241.1	chr19	6039990:6040252:6042054:6042134:6044203:6044293,	6042055	6042134	6042053	6042053	Splice_Site	A	G	p.I87_splice
STAD	TCGA-HU-A4H3-01	HECW2	ENST00000260983.3	chr2	197183275:197184628:197185062:197185163:197187201:197187344,	197185063	197185163	197185165	197185165	Splice_Site	T	G	p.G295_splice
STAD	TCGA-HU-A4H3-01	MYO18B	ENST00000536101.1,ENST00000418374.2,ENST00000335473.7,ENST00000407587.2	chr22	26181394:26181458:26193919:26194064:26219471:26219645,	26193920	26194064	26193919	26193919	Splice_Site	G	T	p.P793_splice
STAD	TCGA-HU-A4H3-01	COL6A6	ENST00000358511.6,ENST00000453409.2	chr3	130367912:130368406:130377519:130377616:130380480:130381152,	130377520	130377616	130377519	130377519	Splice_Site	G	T	p.I1912_splice
STAD	TCGA-HU-A4H3-01	ACHE	ENST00000442452.1	chr7	100488789:100488959:100489954:100490264:100490785:100491525,	100489955	100490264	100489954	100489954	Splice_Site	C	T	p.G518_splice
STAD	TCGA-HU-A4H3-01	ACHE	ENST00000419336.2	chr7	100488789:100488959:100489954:100490175:100490785:100491525,	100489955	100490175	100489954	100489954	Splice_Site	C	T	p.G518_splice
STAD	TCGA-HU-A4H3-01	ACHE	ENST00000412389.1,ENST00000241069.5,ENST00000411582.1,ENST00000428317.1,ENST00000302913.4	chr7	100488789:100488959:100489954:100490439:100490785:100491525,	100489955	100490439	100489954	100489954	Splice_Site	C	T	p.G518_splice
STAD	TCGA-HU-A4H3-01	PTGS1	ENST00000373698.5,ENST00000362012.2	chr9	125148724:125148900:125152476:125152624:125154467:125154933,125148724:125149011:125152476:125152624:125154467:125154933,	125152477	125152624	125152626	125152626	Splice_Site	T	C	p.G482_splice
STAD	TCGA-HU-A4H4-01	SPOCK2	ENST00000463279.2,ENST00000373109.2,ENST00000536168.1,ENST00000317376.4,ENST00000469121.1,ENST00000460053.1	chr10	73822844:73822920:73823935:73823998:73826659:73826878,	73823936	73823998	73823934	73823934	Splice_Site	A	G	p.G331_splice
STAD	TCGA-HU-A4H4-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42049532:42049694:42052906:42053036:42054255:42054356,	42052907	42053036	42052906	42052906	Splice_Site	G	T	p.G431_splice
STAD	TCGA-HU-A4H4-01	HBS1L	ENST00000367837.5,ENST00000529882.1,ENST00000524715.1	chr6	135323952:135323980:135360710:135360905:135371719:135371759,135323952:135323980:135360710:135360905:135363138:135363264,	135360711	135360905	135360709	135360709	Splice_Site	A	G	p.G144_splice
STAD	TCGA-HU-A4H5-01	MSL1	ENST00000579565.1,ENST00000577454.1,ENST00000578648.1	chr17	38279537:38279633:38282435:38282659:38285497:38285513,	38282436	38282659	38282661	38282661	Splice_Site	T	A	p.R130_splice
STAD	TCGA-HU-A4H5-01	SNCAIP	ENST00000542191.1,ENST00000512385.1,ENST00000508017.1,ENST00000379538.3,ENST00000515215.2,ENST00000510658.1	chr5	121726829:121726886:121739487:121739560:121767663:121767777,	121739488	121739560	121739486	121739486	Splice_Site	A	C	p.Y20_splice
STAD	TCGA-HU-A4H8-01	DLGAP3	ENST00000235180.4,ENST00000373347.1	chr1	35333136:35333228:35334205:35334690:35350578:35350664,	35334206	35334690	35334691	35334691	Splice_Site	C	T	p.R667_splice
STAD	TCGA-HU-A4H8-01	GSDMB	ENST00000468820.1,ENST00000524039.1	chr17	38063213:38063240:38066008:38066177:38068578:38068596,38065210:38065295:38066008:38066177:38068578:38068596,38062447:38062524:38066008:38066177:38068578:38068596,	38066009	38066177	38066178	38066178	Splice_Site	C	T	p.R136_splice
STAD	TCGA-HU-A4H8-01	BIN1	ENST00000259238.4,ENST00000484253.1,ENST00000393040.3	chr2	127808377:127808488:127808729:127808819:127816586:127816731,127808377:127808488:127808729:127808819:127809830:127809938,127808377:127808488:127808729:127808819:127815048:127815177,	127808730	127808819	127808729	127808729	Splice_Site	C	T	p.S487_splice
STAD	TCGA-HU-A4H8-01	CRYBB3	ENST00000215855.2	chr22	25599729:25599862:25601186:25601329:25603013:25603234,	25601187	25601329	25601330	25601330	Splice_Site	G	A	p.T157_splice
STAD	TCGA-HU-A4H8-01	FAM13A	ENST00000508360.1,ENST00000264344.5,ENST00000511976.1,ENST00000508369.1,ENST00000503556.1,ENST00000513837.1	chr4	89653272:89653349:89658622:89658706:89660180:89660276,	89658623	89658706	89658707	89658707	Splice_Site	C	A	p.G855_splice
STAD	TCGA-HU-A4H8-01	GRIK2	ENST00000318991.6,ENST00000369134.4,ENST00000413795.1,ENST00000421544.1,ENST00000369137.3,ENST00000369138.1	chr6	102130427:102130481:102134054:102134228:102247522:102247666,	102134055	102134228	102134229	102134229	Splice_Site	G	A	p.T317_splice
STAD	TCGA-HU-A4H8-01	PEX3	ENST00000367591.4	chr6	143792693:143792748:143793296:143793465:143795922:143795993,	143793297	143793465	143793296	143793296	Splice_Site	G	T	p.S193_splice
STAD	TCGA-HU-A4H8-01	ITGB1BP2	ENST00000538820.1,ENST00000373829.3	chrX	70524036:70524150:70524391:70524454:70524814:70525151,	70524392	70524454	70524391	70524391	Splice_Site	G	A	p.L252_splice
STAD	TCGA-IN-7806-01	PRKCQ	ENST00000539722.1,ENST00000263125.5	chr10	6469982:6470324:6472771:6472900:6483854:6484043,	6472772	6472900	6472771	6472771	Splice_Site	C	A	p.V655_splice
STAD	TCGA-IN-7808-01	KRT6C	ENST00000252250.6	chr12	52864915:52865080:52865204:52865300:52865455:52865515,	52865205	52865300	52865203	52865203	Splice_Site	A	T	p.A304_splice
STAD	TCGA-IN-7808-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96859602:96860861:96863847:96864033:96866556:96866667,	96863848	96864033	96864034	96864034	Splice_Site	G	A	p.K679_splice
STAD	TCGA-BR-4363-01	SLC35D2	ENST00000253270.7	chr9	99086372:99086451:99098998:99099066:99106185:99106275,	99098999	99099066	99098997	99098998	Splice_Site	-	C	p.G251_splice
STAD	TCGA-BR-7715-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204218311:204218392:204219673:204219742:204226480:204226988,	204219674	204219742	204219673	204219673	Splice_Site	C	-	p.D531_splice
STAD	TCGA-BR-8360-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66947087:66947184:66947393:66947516:66948118:66948156,	66947394	66947516	66947518	66947519	Splice_Site	-	G	p.V261_splice
STAD	TCGA-BR-8368-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000392381.3,ENST00000447466.1,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4	chr3	196846280:196846401:196857397:196857542:196863412:196863549,	196857398	196857542	196857544	196857545	Splice_Site	-	A	p.V374_splice
STAD	TCGA-BR-8372-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66947087:66947184:66947393:66947516:66948118:66948156,	66947394	66947516	66947518	66947519	Splice_Site	-	G	p.V261_splice
STAD	TCGA-BR-8382-01	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751371	13751371	Splice_Site	T	-	p.V3677_splice
STAD	TCGA-BR-8487-01	SIGIRR	ENST00000332725.3,ENST00000527987.1,ENST00000397632.3,ENST00000431843.2	chr11	405727:406059:406348:406538:407061:407135,405727:406059:406348:406538:406842:406993,	406349	406538	406540	406541	Splice_Site	-	G	p.T294_splice
STAD	TCGA-BR-8591-01	DDX54	ENST00000314045.7,ENST00000548786.1,ENST00000306014.5,ENST00000550016.1	chr12	113600736:113600850:113600936:113601079:113601871:113601898,	113600937	113601079	113600936	113600936	Splice_Site	C	-	p.G694_splice
STAD	TCGA-BR-A4QL-01	AMTN	ENST00000339336.4,ENST00000504451.1	chr4	71394439:71394475:71394900:71394927:71396755:71397017,	71394901	71394927	71394929	71394930	Splice_Site	-	A	p.L119_splice
STAD	TCGA-CD-A4MG-01	ITGA2B	ENST00000353281.4,ENST00000262407.5	chr17	42452365:42452479:42452958:42453084:42453200:42453353,	42452959	42453084	42453086	42453087	Splice_Site	-	G	p.V868_splice
STAD	TCGA-CG-4306-01	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1,ENST00000461616.1,ENST00000483944.1	chr3	124810282:124810400:124810944:124811042:124826324:124826421,	124810945	124811042	124810944	124810944	Splice_Site	C	-	p.G601_splice
STAD	TCGA-CG-4442-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16162012:16162159:16165498:16165586:16170182:16170258,	16165499	16165586	16165586	16165587	Splice_Site	-	GT	p.G638_splice
STAD	TCGA-CG-5723-01	SEC13	ENST00000383801.2,ENST00000337354.4,ENST00000397109.3,ENST00000350697.3,ENST00000477547.2,ENST00000431352.1,ENST00000397105.3,ENST00000397117.1	chr3	10354329:10354414:10357004:10357120:10359733:10359764,	10357005	10357120	10357003	10357004	Splice_Site	-	C	p.G55_splice
STAD	TCGA-CG-5728-01	ANO9	ENST00000528927.1,ENST00000332826.6	chr11	429569:429652:429757:429818:430082:430179,	429758	429818	429820	429821	Splice_Site	-	G	p.L258_splice
STAD	TCGA-D7-6520-01	RGS2	ENST00000464302.1	chr1	192778272:192778311:192779295:192779561:192780110:192780162,	192779296	192779561	192779562	192779563	Splice_Site	-	T	p.Y92_splice
STAD	TCGA-F1-6177-01	THBS1	ENST00000260356.5	chr15	39874393:39874953:39875817:39875893:39876188:39876388,	39875818	39875893	39875816	39875817	Splice_Site	-	G	p.G210_splice
STAD	TCGA-F1-6874-01	RABEP1	ENST00000341923.6,ENST00000408982.2	chr17	5283658:5283757:5284683:5284800:5286416:5286518,5281471:5281527:5284683:5284800:5286416:5286518,	5284684	5284800	5284683	5284683	Splice_Site	G	-	p.A791_splice
STAD	TCGA-FP-A4BE-01	UBE2Q2	ENST00000338677.4,ENST00000267938.4,ENST00000426727.2,ENST00000561851.1,ENST00000569423.1	chr15	76168527:76168612:76170301:76170362:76171438:76171529,	76170302	76170362	76170361	76170364	Splice_Site	AAGT	-	p.K245_splice
STAD	TCGA-HU-A4G9-01	ACP2	ENST00000256997.3,ENST00000537863.1,ENST00000529663.1,ENST00000531547.1,ENST00000531004.1,ENST00000533929.1,ENST00000527256.1,ENST00000534448.1	chr11	47264789:47264872:47266285:47266418:47267232:47267385,47264789:47264872:47266285:47266418:47266855:47266945,	47266286	47266418	47266285	47266285	Splice_Site	C	-	p.G258_splice
STAD	TCGA-HU-A4GH-01	SCTR	ENST00000485440.1,ENST00000019103.5	chr2	120199133:120199175:120204334:120204461:120206264:120206324,	120204335	120204461	120204334	120204334	Splice_Site	C	-	p.Q380_splice
STAD	TCGA-HU-A4H8-01	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751371	13751371	Splice_Site	T	-	p.V3677_splice
STAD	TCGA-HU-A4H8-01	QKI	ENST00000453779.2,ENST00000392127.2,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163876310:163876453:163899811:163899834,	163876311	163876453	163876309	163876310	Splice_Site	AG	-	p.E48_splice
STAD	TCGA-B7-5816-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54125006:54125136:54125437:54125491:54127017:54127154,	54125438	54125491	54125493	54125493	Splice_Site	T	-	p.R1141_splice
STAD	TCGA-BR-4191-01	ALDH6A1	ENST00000554501.1	chr14	74535562:74535684:74537897:74538363:74538598:74538677,	74537898	74538363	74537897	74537908	Splice_Site	CCTTCATGCTGT	-	p.A244_splice
STAD	TCGA-BR-4191-01	ALDH6A1	ENST00000350259.4,ENST00000553458.1	chr14	74535562:74535684:74537897:74538200:74538598:74538677,	74537898	74538200	74537897	74537908	Splice_Site	CCTTCATGCTGT	-	p.A244_splice
STAD	TCGA-BR-4257-01	LGR4	ENST00000389858.4,ENST00000379214.4	chr11	27400243:27400315:27401817:27401886:27402186:27402258,	27401818	27401886	27401816	27401817	Splice_Site	AC	-	p.L324_splice
STAD	TCGA-BR-4292-01	FUBP3	ENST00000319725.9	chr9	133501750:133501892:133506014:133506175:133506943:133507017,	133506015	133506175	133506014	133506015	Splice_Site	-	G	p.G373_splice
STAD	TCGA-BR-4292-01	TALDO1	ENST00000530440.1	chr11	747463:747578:755878:756002:758949:759057,747463:747578:755878:756002:759008:759057,	755879	756002	755877	755885	Splice_Site	AGCCATCGA	-	p.A33_splice
STAD	TCGA-BR-6452-01	GPR155	ENST00000295500.4,ENST00000392552.2,ENST00000392551.2	chr2	175326129:175326220:175326315:175326400:175330512:175330630,	175326316	175326400	175326315	175326315	Splice_Site	C	-	p.G490_splice
STAD	TCGA-BR-8078-01	SCYL1	ENST00000528545.1,ENST00000525364.1	chr11	65304061:65304221:65304456:65304599:65305282:65305351,	65304457	65304599	65304600	65304601	Splice_Site	GT	-	p.E653_splice
STAD	TCGA-BR-8284-01	CLK3	ENST00000569406.1,ENST00000352989.5,ENST00000562078.1,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000483723.1,ENST00000563842.1,ENST00000345005.4	chr15	74917310:74917359:74918142:74918309:74919692:74919742,	74918143	74918309	74918311	74918312	Splice_Site	-	T	p.F421_splice
STAD	TCGA-BR-8363-01	PDZRN3	ENST00000263666.4,ENST00000479530.1,ENST00000462146.2,ENST00000535920.1,ENST00000492909.1,ENST00000494559.1,ENST00000466780.1,ENST00000466348.1	chr3	73434848:73434936:73437118:73437220:73438966:73439029,	73437119	73437220	73437222	73437223	Splice_Site	-	T	p.I473_splice
STAD	TCGA-BR-8363-01	COL5A1	ENST00000371817.3	chr9	137674512:137674566:137676834:137676942:137677840:137677894,	137676835	137676942	137676834	137676834	Splice_Site	G	-	p.G829_splice
STAD	TCGA-BR-8487-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145537422:145537564:145537736:145537829:145537988:145538065,	145537737	145537829	145537735	145537736	Splice_Site	AG	-	p.R859_splice
STAD	TCGA-CD-A4MG-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065770	145065771	Splice_Site	TG	-	p.S127_splice
STAD	TCGA-CG-4305-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961164	39961165	Splice_Site	-	GT	p.Q559_splice
STAD	TCGA-CG-4442-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000466653.1,ENST00000264183.3,ENST00000418304.1,ENST00000491632.1	chr1	235392545:235392700:235394427:235394504:235397727:235397807,	235394428	235394504	235394506	235394507	Splice_Site	TA	-	p.F222_splice
STAD	TCGA-CG-4442-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16162012:16162159:16165498:16165586:16170182:16170258,	16165499	16165586	16165587	16165588	Splice_Site	-	GT	p.G638_splice
STAD	TCGA-CG-4465-01	APEH	ENST00000296456.5,ENST00000469362.2,ENST00000438011.1	chr3	49719154:49719238:49719319:49719400:49719780:49719869,	49719320	49719400	49719319	49719319	Splice_Site	G	-	p.G508_splice
STAD	TCGA-CG-4477-01	SMARCC1	ENST00000425518.1,ENST00000462198.1,ENST00000485737.1,ENST00000254480.5	chr3	47727538:47727660:47730876:47730914:47734730:47734790,	47730877	47730914	47730865	47730876	Splice_Site	CTGAATTGTTAC	-	p.K421_splice
STAD	TCGA-CG-4477-01	ESRP1	ENST00000433389.2,ENST00000358397.5	chr8	95690460:95690599:95704904:95705055:95718152:95718743,95690460:95690599:95704904:95705055:95709079:95709189,	95704905	95705055	95705056	95705059	Splice_Site	GTCA	-	p.Q657_splice
STAD	TCGA-CG-4477-01	WDR88	ENST00000355868.3,ENST00000361680.2	chr19	33642086:33642216:33647260:33647448:33651319:33651402,	33647261	33647448	33647448	33647449	Splice_Site	-	CA	p.S333_splice
STAD	TCGA-CG-5721-01	RAMP2	ENST00000589683.1,ENST00000588928.1,ENST00000253796.5	chr17	40913851:40913917:40914372:40914481:40914614:40914716,	40914373	40914481	40914372	40914373	Splice_Site	-	G	p.G55_splice
STAD	TCGA-CG-5723-01	SEC13	ENST00000383801.2,ENST00000337354.4,ENST00000397109.3,ENST00000350697.3,ENST00000477547.2,ENST00000431352.1,ENST00000397105.3,ENST00000397117.1	chr3	10354329:10354414:10357004:10357120:10359733:10359764,	10357005	10357120	10357004	10357005	Splice_Site	-	C	p.G55_splice
STAD	TCGA-CG-5723-01	ACP2	ENST00000256997.3,ENST00000537863.1,ENST00000529663.1,ENST00000531547.1,ENST00000531004.1,ENST00000533929.1,ENST00000527256.1,ENST00000534448.1	chr11	47264789:47264872:47266285:47266418:47267232:47267385,47264789:47264872:47266285:47266418:47266855:47266945,	47266286	47266418	47266285	47266285	Splice_Site	C	-	p.G258_splice
STAD	TCGA-CG-5726-01	SFTPC	ENST00000521315.1,ENST00000523296.1	chr8	22020592:22020715:22020948:22021059:22021395:22021425,22020592:22020715:22020948:22021059:22021413:22021425,	22020949	22021059	22021060	22021061	Splice_Site	-	GT	p.Q194_splice
STAD	TCGA-CG-5733-01	RIMS1	ENST00000520567.1,ENST00000264839.7,ENST00000522291.1,ENST00000518273.1,ENST00000517960.1,ENST00000521978.1,ENST00000491071.2,ENST00000370419.2	chr6	72806654:72806865:72809677:72809689:72889277:72889618,	72809678	72809689	72809676	72809678	Splice_Site	AGG	-	p.E154_splice
STAD	TCGA-D7-6520-01	RGS2	ENST00000464302.1	chr1	192778272:192778311:192779295:192779561:192780110:192780162,	192779296	192779561	192779563	192779564	Splice_Site	-	T	p.Y92_splice
STAD	TCGA-D7-6528-01	FCHO1	ENST00000596536.1,ENST00000596507.1,ENST00000597512.1,ENST00000389133.4,ENST00000595033.1,ENST00000594202.1,ENST00000252771.7,ENST00000600676.1,ENST00000595023.1,ENST00000600209.1,ENST00000593833.1,ENST00000539407.1,ENST00000594068.1,ENST00000597474.1,ENST00000596951.1	chr19	17875183:17875258:17877477:17877619:17881233:17881272,	17877478	17877619	17877620	17877623	Splice_Site	GTGT	-	p.K112_splice
STAD	TCGA-F1-6177-01	SFTPC	ENST00000521315.1,ENST00000523296.1	chr8	22020592:22020715:22020948:22021059:22021395:22021425,22020592:22020715:22020948:22021059:22021413:22021425,	22020949	22021059	22021060	22021061	Splice_Site	-	GT	p.Q194_splice
STAD	TCGA-F1-6177-01	THBS1	ENST00000260356.5	chr15	39874393:39874953:39875817:39875893:39876188:39876388,	39875818	39875893	39875817	39875818	Splice_Site	-	G	p.G210_splice
STAD	TCGA-HU-8608-01	CCDC36	ENST00000452691.2,ENST00000366429.2	chr3	49236942:49237006:49249198:49249269:49273980:49274007,	49249199	49249269	49249271	49249272	Splice_Site	-	TAAGT	p.G19_splice
STAD	TCGA-HU-A4G8-01	APEH	ENST00000296456.5,ENST00000469362.2,ENST00000438011.1	chr3	49719154:49719238:49719319:49719400:49719780:49719869,	49719320	49719400	49719319	49719319	Splice_Site	G	-	p.G508_splice
STAD	TCGA-HU-A4GC-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576928	7576928	Splice_Site	T	-	p.A307_splice
STAD	TCGA-HU-A4GX-01	TCP11L1	ENST00000528107.1,ENST00000531632.2,ENST00000432887.1,ENST00000527661.1,ENST00000334274.4,ENST00000324357.9	chr11	33083075:33083272:33087375:33087557:33090232:33090405,	33087376	33087557	33087372	33087375	Splice_Site	ACAG	-	p.T325_splice
STAD	TCGA-HU-A4H0-01	SGIP1	ENST00000468286.1,ENST00000371036.3,ENST00000371039.1	chr1	67091530:67091593:67098752:67098777:67105459:67105516,	67098753	67098777	67098778	67098781	Splice_Site	GTAA	-	p.I33_splice
STAD	TCGA-HU-A4H8-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395813	64395814	Splice_Site	GT	-	p.R730_splice
TGCT	TCGA-YU-AA61-01	SCAF1	ENST00000601038.1,ENST00000595242.1,ENST00000360565.3,ENST00000598359.1	chr19	50148277:50148391:50148610:50148668:50149364:50149459,	50148611	50148668	50148669	50148669	Splice_Site	G	A	.
TGCT	TCGA-VF-A8A9-01	HHAT	ENST00000426968.1,ENST00000537898.1	chr1	210573811:210574006:210577807:210578023:210591497:210591669,210560811:210560925:210577807:210578023:210591497:210591669,	210577808	210578023	210577807	210577807	Splice_Site	G	C	.
TGCT	TCGA-W4-A7U2-01	MFF	ENST00000409616.1,ENST00000443428.2,ENST00000392059.1,ENST00000353339.3,ENST00000418961.1	chr2	228193393:228193505:228194321:228194499:228195341:228195405,	228194322	228194499	228194321	228194321	Splice_Site	G	T	.
TGCT	TCGA-W4-A7U2-01	MFF	ENST00000423098.1	chr2	228193393:228193505:228194321:228194375:228195341:228195405,	228194322	228194375	228194321	228194321	Splice_Site	G	T	.
TGCT	TCGA-W4-A7U2-01	MFF	ENST00000525195.1	chr2	228193393:228193505:228194321:228194413:228195341:228195405,	228194322	228194413	228194321	228194321	Splice_Site	G	T	.
TGCT	TCGA-2G-AAEX-01	CACNA1C	ENST00000399649.1	chr12	2721068:2721179:2743462:2743540:2760805:2760913,	2743463	2743540	2743461	2743461	Splice_Site	A	C	.
TGCT	TCGA-2G-AAEX-01	CACNA1C	ENST00000399629.1	chr12	2721068:2721179:2743462:2743546:2757640:2757673,2721068:2721179:2743462:2743546:2760805:2760913,2742794:2742878:2743462:2743546:2757640:2757673,2742794:2742878:2743462:2743546:2760805:2760913,	2743463	2743546	2743461	2743461	Splice_Site	A	C	.
TGCT	TCGA-2G-AAKG-05	PRICKLE2	ENST00000564377.1,ENST00000295902.6	chr3	64138857:64139044:64142837:64143041:64145615:64145753,	64142838	64143041	64142837	64142837	Splice_Site	C	A	.
TGCT	TCGA-2G-AALR-01	SDK2	ENST00000479356.1,ENST00000388726.3,ENST00000392650.3,ENST00000424778.1	chr17	71386425:71386620:71387578:71387677:71389698:71389888,	71387579	71387677	71387578	71387578	Splice_Site	C	T	.
TGCT	TCGA-2G-AALX-01	ZNF143	ENST00000299606.2,ENST00000396604.1,ENST00000530463.1,ENST00000396597.3,ENST00000396602.2	chr11	9517849:9517925:9519221:9519347:9522637:9522817,	9519222	9519347	9519221	9519221	Splice_Site	G	T	.
TGCT	TCGA-2G-AAFV-01	TRIP12	ENST00000487178.1,ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230668286:230668405:230668714:230668943:230670445:230670518,	230668715	230668943	230668944	230668944	Splice_Site	C	G	.
TGCT	TCGA-2G-AALS-01	VPS72	ENST00000368892.4,ENST00000491094.2,ENST00000496809.1,ENST00000354473.4	chr1	151150476:151150621:151156792:151156969:151157981:151158096,	151156793	151156969	151156791	151156791	Splice_Site	A	T	.
TGCT	TCGA-2G-AAKH-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283804:74284028:74285223:74285262,74283247:74283386:74283804:74284028:74285223:74285262,	74283805	74284028	74283804	74283804	Splice_Site	G	T	.
TGCT	TCGA-ZM-AA0E-01	IQGAP1	ENST00000560738.1,ENST00000268182.5	chr15	91035776:91035943:91037944:91038067:91040463:91040572,	91037945	91038067	91037943	91037944	Splice_Site	AG	-	.
TGCT	TCGA-XY-A8S2-01	MKS1	ENST00000337050.7,ENST00000578789.1,ENST00000313863.6,ENST00000537529.2,ENST00000393119.2	chr17	56292101:56292199:56293448:56293604:56294026:56294097,	56293449	56293604	56293605	56293605	Splice_Site	C	G	.
TGCT	TCGA-S6-A8JY-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000337620.4	chr7	26245987:26246130:26248012:26248175:26251281:26251337,	26248013	26248175	26248012	26248012	Splice_Site	G	A	.
TGCT	TCGA-S6-A8JY-01	SLC17A4	ENST00000439485.2,ENST00000377905.4	chr6	25776822:25776955:25777039:25777187:25778153:25778244,	25777040	25777187	25777039	25777039	Splice_Site	G	A	.
TGCT	TCGA-2G-AAH2-01	TRMU	ENST00000381021.3,ENST00000441818.1,ENST00000457572.1,ENST00000453630.1,ENST00000290846.4,ENST00000381019.3,ENST00000456595.1	chr22	46748169:46748227:46749663:46749764:46751340:46751485,	46749664	46749764	46749663	46749663	Splice_Site	G	C	.
TGCT	TCGA-2G-AAEW-01	LRCH4	ENST00000476881.1,ENST00000497245.1,ENST00000467201.1,ENST00000310300.6	chr7	100172685:100172927:100173327:100173405:100173493:100173631,	100173328	100173405	100173407	100173407	Splice_Site	T	C	.
TGCT	TCGA-XE-AAOL-01	GUK1	ENST00000453943.1,ENST00000366726.1,ENST00000412265.1,ENST00000492871.1,ENST00000465025.1,ENST00000366721.1,ENST00000312726.4,ENST00000366716.1,ENST00000464858.1,ENST00000366730.1,ENST00000391865.3,ENST00000495999.1,ENST00000366718.1	chr1	228335170:228335245:228335315:228335400:228336071:228336157,	228335316	228335400	228335314	228335314	Splice_Site	A	G	.
TGCT	TCGA-2G-AAG8-01	ATG4B	ENST00000494465.1,ENST00000482507.1,ENST00000404914.3,ENST00000474739.2,ENST00000475693.1,ENST00000396411.3,ENST00000428861.1,ENST00000344376.5,ENST00000405546.3,ENST00000402096.1,ENST00000460211.1	chr2	242607954:242608100:242610140:242610197:242610726:242610781,	242610141	242610197	242610198	242610198	Splice_Site	G	T	.
TGCT	TCGA-2G-AAG9-01	KDM2A	ENST00000529006.2,ENST00000398645.2	chr11	66947549:66947688:66948790:66948869:66949316:66949363,	66948791	66948869	66948868	66948871	Splice_Site	AAGT	-	p.87_splice
THCA	TCGA-DJ-A3UP-01	CTR9	ENST00000526874.1,ENST00000361367.2,ENST00000529355.1	chr11	10789352:10789538:10789620:10789708:10789889:10790006,	10789621	10789708	10789616	10789620	Splice_Site	TATAG	-	.
THCA	TCGA-EM-A3FM-01	C7	ENST00000313164.9,ENST00000508185.1	chr5	40936439:40936587:40937653:40937792:40945299:40945462,	40937654	40937792	40937653	40937653	Splice_Site	G	T	.
THCA	TCGA-EM-A22O-01	LCMT1	ENST00000564011.1,ENST00000380962.5,ENST00000399069.3,ENST00000380966.4	chr16	25180432:25180534:25182034:25182126:25189321:25189344,25180432:25180534:25182034:25182126:25186257:25186355,	25182035	25182126	25182127	25182127	Splice_Site	G	A	.
THCA	TCGA-EL-A3H1-01	AHI1	ENST00000265602.6,ENST00000417892.2,ENST00000475846.2,ENST00000367800.4,ENST00000531788.1,ENST00000457866.2,ENST00000367799.2	chr6	135679269:135679325:135715913:135716034:135726088:135726115,	135715914	135716034	135715913	135715913	Splice_Site	C	G	.
THCA	TCGA-EL-A3D6-01	SLC8A3	ENST00000381269.2	chr14	70518706:70518831:70522512:70522530:70527552:70527656,	70522513	70522530	70522512	70522512	Splice_Site	C	T	.
THCA	TCGA-EL-A3D6-01	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74014526:74014681:74014994:74015141:74015608:74015734,	74014995	74015141	74015142	74015142	Splice_Site	C	G	.
THCA	TCGA-BJ-A3EZ-01	DHX8	ENST00000262415.3,ENST00000540306.1,ENST00000587044.1	chr17	41585176:41585387:41585706:41585888:41590729:41590870,	41585707	41585888	41585706	41585706	Splice_Site	G	A	.
THCA	TCGA-FE-A233-01	MCMBP	ENST00000360003.3,ENST00000466047.1,ENST00000369077.3	chr10	121616858:121616951:121618395:121618437:121618552:121618693,	121618396	121618437	121618395	121618395	Splice_Site	C	A	.
THCA	TCGA-EM-A3O3-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363397	198363397	Splice_Site	A	C	.
THCA	TCGA-EL-A4JW-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301047	179301047	Splice_Site	C	T	.
THCA	TCGA-DJ-A2Q1-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442507	95442507	Splice_Site	G	A	.
THCA	TCGA-BJ-A4O9-01	RAD23B	ENST00000457811.1,ENST00000416373.2,ENST00000358015.3	chr9	110068822:110068928:110073962:110074018:110081032:110081160,	110073963	110074018	110074019	110074019	Splice_Site	G	T	.
THCA	TCGA-EM-A22P-01	USP48	ENST00000529637.1,ENST00000400301.1,ENST00000308271.9,ENST00000374732.3	chr1	22032618:22032680:22032959:22033082:22033236:22033361,	22032960	22033082	22033083	22033083	Splice_Site	C	G	.
THCA	TCGA-FK-A3SB-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306433	179306433	Splice_Site	T	A	.
THCA	TCGA-EL-A4KD-01	ECSIT	ENST00000591104.1	chr19	11618304:11618377:11618516:11618544:11618805:11618863,	11618517	11618544	11618516	11618516	Splice_Site	C	T	.
THCA	TCGA-EL-A4KD-01	ECSIT	ENST00000417981.2,ENST00000585318.1,ENST00000270517.7,ENST00000592571.1	chr19	11618304:11618377:11618516:11618665:11618805:11618863,	11618517	11618665	11618516	11618516	Splice_Site	C	T	.
THCA	TCGA-L6-A4EU-01	MST1R	ENST00000411578.2,ENST00000296474.3	chr3	49933300:49933313:49933393:49933540:49933627:49933837,	49933394	49933540	49933541	49933541	Splice_Site	C	T	.
THCA	TCGA-BJ-A3PU-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131353755:131353904:131355261:131355321:131356453:131356652,	131355262	131355321	131355261	131355261	Splice_Site	G	A	.
THCA	TCGA-EL-A3H5-01	PRKCSH	ENST00000586486.1,ENST00000252455.2,ENST00000587327.1,ENST00000412601.1,ENST00000591462.1,ENST00000589838.1,ENST00000592741.1,ENST00000587290.1	chr19	11559036:11559106:11559354:11559444:11559728:11559803,	11559355	11559444	11559445	11559445	Splice_Site	G	T	.
THCA	TCGA-ET-A3BT-01	PTPRD	ENST00000355233.5	chr9	8449724:8449837:8454579:8454594:8460410:8460568,	8454580	8454594	8454579	8454579	Splice_Site	C	A	.
THCA	TCGA-ET-A3BT-01	PTPRD	ENST00000486161.1,ENST00000397611.3	chr9	8449724:8449837:8454579:8454591:8460410:8460568,	8454580	8454591	8454579	8454579	Splice_Site	C	A	.
THCA	TCGA-J8-A3NZ-01	ULK3	ENST00000566479.1,ENST00000561725.1,ENST00000565881.1,ENST00000563301.1,ENST00000570276.1,ENST00000569437.1	chr15	75134415:75134459:75134620:75134761:75135344:75135465,75134415:75134536:75134620:75134761:75135344:75135465,	75134621	75134761	75134762	75134762	Splice_Site	C	G	.
THCA	TCGA-DJ-A4UT-01	GBF1	ENST00000369983.3	chr10	104139609:104139711:104140005:104140119:104140262:104140443,	104140006	104140119	104140004	104140004	Splice_Site	A	C	.
THCA	TCGA-DE-A69K-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101754977:101755054:101758486:101758553:101801839:101801888,	101758487	101758553	101758552	101758555	Splice_Site	AAGT	-	p.236_splice
THYM	TCGA-XM-A8RC-01	TOR2A	ENST00000496460.1,ENST00000373284.5	chr9	130494190:130494557:130494842:130494970:130495663:130495839,	130494843	130494970	130494842	130494842	Splice_Site	C	T	.
THYM	TCGA-X7-A8DB-01	DERL3	ENST00000476077.1,ENST00000318109.7,ENST00000404056.1,ENST00000406855.3	chr22	24180002:24180041:24180538:24180632:24180750:24180824,	24180539	24180632	24180538	24180538	Splice_Site	C	T	.
THYM	TCGA-XU-A932-01	PPP2R1A	ENST00000462990.1,ENST00000454220.2,ENST00000322088.6,ENST00000473455.2	chr19	52709215:52709316:52714512:52714745:52715938:52715951,	52714513	52714745	52714512	52714512	Splice_Site	G	T	.
THYM	TCGA-ZB-A96F-01	EHBP1	ENST00000431489.1,ENST00000444311.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63176228:63176297:63182651:63182795:63206322:63206421,	63182652	63182795	63182796	63182796	Splice_Site	G	T	.
THYM	TCGA-ZB-A96F-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000346562.2,ENST00000357798.5,ENST00000548645.1	chr14	34029390:34029416:34145416:34145591:34204419:34204538,	34145417	34145591	34145415	34145415	Splice_Site	A	G	.
THYM	TCGA-XU-A92R-01	TCEAL4	ENST00000472745.1	chrX	102840490:102840552:102840786:102841219:102841576:102841753,	102840787	102841219	102841221	102841221	Splice_Site	T	C	.
THYM	TCGA-XU-A92R-01	TCEAL4	ENST00000459722.1	chrX	102840542:102840611:102840897:102841219:102841576:102841753,	102840898	102841219	102841221	102841221	Splice_Site	T	C	.
THYM	TCGA-XU-A92R-01	TCEAL4	ENST00000494801.1	chrX	102840542:102840611:102841146:102841219:102841576:102841753,102840542:102840611:102841146:102841219:102841581:102841777,102840490:102840552:102841146:102841219:102841576:102841753,102840442:102840552:102841146:102841219:102841581:102841676,	102841147	102841219	102841221	102841221	Splice_Site	T	C	.
THYM	TCGA-XU-A92R-01	TDRD9	ENST00000409874.4,ENST00000339063.5	chr14	104433045:104433168:104436877:104436958:104441725:104441890,	104436878	104436958	104436959	104436959	Splice_Site	G	T	.
THYM	TCGA-X7-A8DJ-01	UTRN	ENST00000367526.4,ENST00000460618.1,ENST00000367545.3	chr6	145160359:145160420:145161875:145161968:145167940:145167958,	145161876	145161968	145161969	145161969	Splice_Site	G	A	.
THYM	TCGA-4V-A9QR-01	NSMCE4A	ENST00000369023.3,ENST00000369017.5,ENST00000538652.1,ENST00000468209.1,ENST00000489266.1	chr10	123722752:123722843:123724800:123724900:123727169:123727321,	123724801	123724900	123724901	123724901	Splice_Site	C	T	.
THYM	TCGA-XU-A92W-01	PARPBP	ENST00000327680.2,ENST00000412715.2,ENST00000378128.3,ENST00000358383.5,ENST00000392911.2,ENST00000417507.2	chr12	102542012:102542241:102547646:102547754:102558215:102558386,	102547647	102547754	102547755	102547755	Splice_Site	G	T	.
THYM	TCGA-XU-A92Y-01	TMEM98	ENST00000394642.3,ENST00000395149.2,ENST00000261713.4,ENST00000579849.1,ENST00000583437.2,ENST00000439138.1,ENST00000583120.1,ENST00000578289.1,ENST00000582227.1	chr17	31258610:31258677:31260191:31260323:31261308:31261326,	31260192	31260323	31260191	31260191	Splice_Site	G	T	.
THYM	TCGA-XM-A8RG-01	CD44	ENST00000525685.1	chr11	35211561:35211612:35219667:35219793:35229651:35229711,35211561:35211612:35219667:35219793:35236398:35236408,35211561:35211612:35219667:35219793:35222628:35222742,35218382:35218421:35219667:35219793:35222628:35222742,35218292:35218421:35219667:35219793:35229651:35229711,	35219668	35219793	35219794	35219794	Splice_Site	G	T	.
THYM	TCGA-XM-A8RG-01	CD44	ENST00000524922.1	chr11	35211561:35211612:35219694:35219793:35222628:35222742,	35219695	35219793	35219794	35219794	Splice_Site	G	T	.
THYM	TCGA-X7-A8D6-01	NAA25	ENST00000551858.1,ENST00000552527.1,ENST00000549711.1,ENST00000261745.4	chr12	112492191:112492372:112498073:112498163:112498984:112499192,	112498074	112498163	112498073	112498073	Splice_Site	C	T	.
THYM	TCGA-XH-A853-01	SPAG16	ENST00000374309.3,ENST00000331683.5,ENST00000452556.1,ENST00000451561.1,ENST00000406979.2,ENST00000480494.1	chr2	214878674:214878801:214972919:214972985:215013863:215013990,	214972920	214972985	214972919	214972919	Splice_Site	G	T	.
THYM	TCGA-XH-A853-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109623383:109623545:109625803:109625967:109629417:109629568,	109625804	109625967	109625968	109625968	Splice_Site	G	T	.
THYM	TCGA-X7-A8M5-01	EPB41L1	ENST00000452261.1	chr20	34700347:34700402:34761685:34761876:34763472:34763593,34742671:34742818:34761685:34761876:34763472:34763593,34680653:34680735:34761685:34761876:34763472:34763593,34701614:34701721:34761685:34761876:34763472:34763593,	34761686	34761876	34761684	34761684	Splice_Site	A	G	.
THYM	TCGA-XM-A8RD-01	PIK3R1	ENST00000320694.8	chr5	67586509:67586662:67588086:67588189:67588928:67589027,67584522:67584579:67588086:67588189:67588928:67589027,	67588087	67588189	67588086	67588086	Splice_Site	G	A	.
THYM	TCGA-4V-A9QT-01	MOB1A	ENST00000396049.4	chr2	74383544:74383772:74386217:74386381:74392344:74392478,	74386218	74386381	74386383	74386383	Splice_Site	T	C	.
THYM	TCGA-XU-A930-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228537590:228537758:228538541:228538644:228539021:228539151,	228538542	228538644	228538541	228538541	Splice_Site	G	T	.
THYM	TCGA-XU-A930-01	DDO	ENST00000368924.3	chr6	110725976:110726153:110729536:110729645:110734493:110734669,	110729537	110729645	110729536	110729536	Splice_Site	C	T	.
THYM	TCGA-X7-A8DF-01	PNLIPRP1	ENST00000525820.1,ENST00000528052.1,ENST00000531825.1,ENST00000534537.1,ENST00000358834.4,ENST00000482833.1,ENST00000526223.1	chr10	118363541:118363650:118364897:118365065:118368564:118368679,	118364898	118365065	118364897	118364897	Splice_Site	G	T	.
THYM	TCGA-4X-A9FB-01	MPP3	ENST00000398393.1,ENST00000398389.4	chr17	41893405:41893447:41894044:41894065:41895413:41895478,	41894045	41894065	41894044	41894044	Splice_Site	C	T	.
THYM	TCGA-4X-A9FB-01	PLD2	ENST00000572940.1,ENST00000263088.6,ENST00000575316.1,ENST00000575246.2	chr17	4711066:4711176:4711278:4711409:4711568:4711711,	4711279	4711409	4711278	4711278	Splice_Site	G	T	.
THYM	TCGA-4V-A9QJ-01	RPS11	ENST00000594493.1,ENST00000601306.1,ENST00000596873.1,ENST00000270625.2	chr19	50000450:50000582:50000776:50000852:50001173:50001303,	50000777	50000852	50000775	50000775	Splice_Site	A	G	.
THYM	TCGA-4V-A9QJ-01	AHCYL2	ENST00000325006.3,ENST00000531335.2,ENST00000446544.2,ENST00000490911.1,ENST00000474594.1,ENST00000466924.1,ENST00000446212.1	chr7	129037062:129037165:129040130:129040225:129043219:129043326,	129040131	129040225	129040129	129040129	Splice_Site	A	T	.
THYM	TCGA-4V-A9QQ-01	RAC3	ENST00000580965.1,ENST00000306897.4,ENST00000584341.1	chr17	79990586:79990704:79990822:79990885:79991315:79991475,	79990823	79990885	79990822	79990822	Splice_Site	G	T	.
THYM	TCGA-ZB-A964-01	MROH6	ENST00000529971.1	chr8	144653836:144653991:144654202:144654355:144654590:144654918,	144654203	144654355	144654356	144654356	Splice_Site	C	A	.
THYM	TCGA-ZB-A964-01	FNDC1	ENST00000329629.8,ENST00000297267.9,ENST00000340366.6	chr6	159621027:159621114:159621544:159621613:159635976:159636183,	159621545	159621613	159621614	159621614	Splice_Site	G	T	.
THYM	TCGA-XU-A92Z-01	TINAG	ENST00000259782.4	chr6	54208023:54208147:54212164:54212315:54214513:54214694,	54212165	54212315	54212316	54212316	Splice_Site	G	T	.
THYM	TCGA-YT-A95H-01	FANCM	ENST00000267430.5,ENST00000556036.1,ENST00000542564.2	chr14	45620599:45620731:45623122:45623255:45623899:45624025,	45623123	45623255	45623122	45623122	Splice_Site	G	T	.
THYM	TCGA-YT-A95H-01	NUP50	ENST00000422489.1	chr22	45567480:45567564:45571774:45571961:45574118:45574195,45567480:45567564:45571774:45571961:45577166:45577248,	45571775	45571961	45571962	45571962	Splice_Site	G	T	.
THYM	TCGA-YT-A95H-01	COPG1	ENST00000314797.6,ENST00000515725.1	chr3	128984391:128984635:128985866:128985942:128986779:128986883,	128985867	128985942	128985866	128985866	Splice_Site	G	T	.
THYM	TCGA-X7-A8DD-01	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000392129.6,ENST00000580248.1	chr1	165697322:165697358:165712403:165712548:165721338:165721406,	165712404	165712548	165712403	165712403	Splice_Site	C	T	.
THYM	TCGA-X7-A8DD-01	TKT	ENST00000423525.2	chr3	53258729:53259625:53259766:53259947:53260771:53260894,	53259767	53259947	53259766	53259766	Splice_Site	C	A	.
THYM	TCGA-X7-A8DD-01	USP5	ENST00000229268.8,ENST00000537267.1,ENST00000389231.5	chr12	6968633:6968705:6969314:6969402:6969529:6969655,	6969315	6969402	6969314	6969314	Splice_Site	G	T	.
THYM	TCGA-X7-A8DD-01	PLB1	ENST00000329020.6,ENST00000436544.1,ENST00000327757.5	chr2	28802493:28802574:28804934:28805000:28805271:28805372,	28804935	28805000	28804934	28804934	Splice_Site	G	T	.
THYM	TCGA-X7-A8DD-01	COL16A1	ENST00000271069.6,ENST00000373668.3,ENST00000373672.3,ENST00000373667.4	chr1	32160786:32160822:32161361:32161388:32161688:32161742,	32161362	32161388	32161390	32161390	Splice_Site	T	C	.
THYM	TCGA-5U-AB0F-01	NDUFB5	ENST00000259037.3,ENST00000493866.1,ENST00000473500.1,ENST00000482604.1,ENST00000359944.6,ENST00000472629.1,ENST00000476587.1,ENST00000468210.1	chr3	179333794:179333837:179336202:179336309:179341707:179341879,179334770:179334832:179336202:179336309:179341707:179341879,	179336203	179336309	179336201	179336201	Splice_Site	A	G	.
THYM	TCGA-3G-AB14-01	SH3D19	ENST00000409598.4,ENST00000455740.1,ENST00000409252.2,ENST00000514152.1,ENST00000304527.4	chr4	152080391:152080504:152086740:152086848:152095821:152096444,	152086741	152086848	152086849	152086849	Splice_Site	C	T	.
THYM	TCGA-ZC-AAAF-01	EFCAB13	ENST00000331493.2	chr17	45422381:45422464:45438743:45438887:45447802:45447874,45425173:45425317:45438743:45438887:45447802:45447874,	45438744	45438887	45438743	45438743	Splice_Site	G	A	.
THYM	TCGA-ZC-AAAF-01	PSMD3	ENST00000541736.1,ENST00000415039.3,ENST00000264639.4	chr17	38140711:38140737:38142827:38142965:38144935:38145072,	38142828	38142965	38142827	38142827	Splice_Site	G	T	.
THYM	TCGA-X7-A8D8-01	COL13A1	ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398968.3,ENST00000398973.3,ENST00000398972.3	chr10	71637794:71637821:71640258:71640309:71647211:71647247,71631939:71631966:71640258:71640309:71647211:71647247,71634883:71634919:71640258:71640309:71647211:71647247,	71640259	71640309	71640310	71640310	Splice_Site	G	T	.
THYM	TCGA-XU-AAXX-01	SPIRE2	ENST00000565628.1	chr16	89930201:89930269:89935974:89936090:89936457:89936609,	89935975	89936090	89936091	89936091	Splice_Site	G	T	.
THYM	TCGA-XU-AAXX-01	LZTFL1	ENST00000536047.1,ENST00000418700.1	chr3	45879432:45879543:45896477:45896566:45954611:45954669,	45896478	45896566	45896567	45896567	Splice_Site	C	A	.
THYM	TCGA-ZB-A966-01	CELSR1	ENST00000262738.3	chr22	46832092:46832186:46835085:46835308:46859603:46860242,	46835086	46835308	46835085	46835085	Splice_Site	C	T	.
THYM	TCGA-3S-AAYX-01	ZFAND3	ENST00000373391.2	chr6	37787717:37787792:37897734:37897775:37971466:37971559,37787717:37787792:37897734:37897775:38029368:38029551,	37897735	37897775	37897734	37897734	Splice_Site	G	T	.
THYM	TCGA-YT-A95G-01	NAPA	ENST00000602174.1,ENST00000597274.1	chr19	47998806:47998853:48003889:48004006:48006679:48006759,47998806:47998853:48003889:48004006:48018099:48018202,	48003890	48004006	48004007	48004007	Splice_Site	C	A	.
THYM	TCGA-YT-A95G-01	TPD52L1	ENST00000528193.1,ENST00000534199.1,ENST00000392483.2,ENST00000392482.2,ENST00000534000.1,ENST00000368402.5,ENST00000532429.1,ENST00000532978.1,ENST00000524679.1,ENST00000527711.1,ENST00000368388.2,ENST00000534368.1,ENST00000304877.13	chr6	125541223:125541339:125550263:125550412:125569427:125569506,	125550264	125550412	125550413	125550413	Splice_Site	G	A	.
THYM	TCGA-XU-A92V-01	CYB5A	ENST00000397914.4	chr18	71922975:71923010:71930583:71930712:71958981:71959170,	71930584	71930712	71930713	71930713	Splice_Site	C	T	.
THYM	TCGA-XU-A92V-01	SLC30A7	ENST00000357650.4,ENST00000370112.4	chr1	101362125:101362227:101372407:101372521:101376618:101376706,	101372408	101372521	101372407	101372407	Splice_Site	G	T	.
THYM	TCGA-4X-A9FD-01	CCNYL1	ENST00000339882.5,ENST00000295414.3,ENST00000392209.3,ENST00000452312.1,ENST00000420321.1	chr2	208606997:208607066:208611770:208611937:208615680:208615838,	208611771	208611937	208611770	208611770	Splice_Site	G	T	.
THYM	TCGA-4X-A9FD-01	PPFIA3	ENST00000602351.1,ENST00000334186.4,ENST00000602655.1,ENST00000602848.1,ENST00000602905.1,ENST00000602897.1	chr19	49652249:49652425:49652513:49652582:49652803:49652975,	49652514	49652582	49652512	49652512	Splice_Site	A	G	.
THYM	TCGA-4X-A9FD-01	USP47	ENST00000399455.2,ENST00000539466.1,ENST00000527733.1,ENST00000339865.5	chr11	11924809:11924889:11926945:11927095:11941702:11941798,	11926946	11927095	11927096	11927096	Splice_Site	G	T	.
THYM	TCGA-4V-A9QI-01	PTPRO	ENST00000348962.2,ENST00000543886.1,ENST00000281171.4	chr12	15636907:15637181:15650178:15650337:15652375:15652528,	15650179	15650337	15650178	15650178	Splice_Site	G	T	.
THYM	TCGA-XU-AAXZ-01	ANXA7	ENST00000492380.1	chr10	75156921:75157032:75157938:75158143:75160560:75160615,75156921:75157032:75157938:75158143:75173769:75173816,	75157939	75158143	75158145	75158145	Splice_Site	T	C	.
THYM	TCGA-X7-A8M1-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21453008:21453179:21456257:21456371:21461899:21462009,21451394:21451625:21456257:21456371:21461899:21462009,	21456258	21456371	21456257	21456257	Splice_Site	G	T	.
THYM	TCGA-4V-A9QL-01	PSMD14	ENST00000477232.1,ENST00000409682.3	chr2	162251588:162251714:162265347:162265410:162267812:162268226,	162265348	162265410	162265347	162265347	Splice_Site	G	T	.
THYM	TCGA-4V-A9QL-01	SGCD	ENST00000517913.1	chr5	155753957:155754242:155756543:155756589:155771498:155771558,155550865:155551029:155756543:155756589:155771498:155771558,	155756544	155756589	155756543	155756543	Splice_Site	G	T	.
THYM	TCGA-4V-A9QL-01	STK17A	ENST00000462448.1,ENST00000319357.5	chr7	43635499:43635712:43647854:43647999:43659195:43659322,	43647855	43647999	43648000	43648000	Splice_Site	G	T	.
THYM	TCGA-4V-A9QL-01	PHF14	ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11068307:11068445:11075266:11075413:11076044:11076315,	11075267	11075413	11075266	11075266	Splice_Site	G	T	.
THYM	TCGA-4V-A9QL-01	MTBP	ENST00000305949.1	chr8	121518945:121519101:121522173:121522269:121528164:121528431,	121522174	121522269	121522172	121522172	Splice_Site	A	G	.
THYM	TCGA-4V-A9QL-01	APOH	ENST00000585162.1	chr17	64210570:64210768:64212905:64213085:64216671:64216748,64208156:64208306:64212905:64213085:64216671:64216748,	64212906	64213085	64213087	64213087	Splice_Site	T	A	.
THYM	TCGA-XM-A8RI-01	GHITM	ENST00000372134.3	chr10	85903750:85903862:85904630:85904772:85908485:85908594,	85904631	85904772	85904630	85904630	Splice_Site	G	T	.
THYM	TCGA-XM-A8RI-01	ZNF678	ENST00000465266.1,ENST00000608949.1	chr1	227770214:227770307:227834244:227834371:227842036:227842054,227770214:227770307:227834244:227834371:227838656:227838777,	227834245	227834371	227834243	227834243	Splice_Site	A	G	.
THYM	TCGA-X7-A8DI-01	PSMF1	ENST00000246015.4,ENST00000479715.1,ENST00000381898.4,ENST00000333082.3,ENST00000335877.6	chr20	1108068:1108151:1115763:1115949:1143773:1143827,	1115764	1115949	1115950	1115950	Splice_Site	G	T	.
THYM	TCGA-3G-AB19-01	UNK	ENST00000293218.3,ENST00000589666.1	chr17	73815819:73815866:73816000:73816189:73818557:73818739,	73816001	73816189	73816190	73816190	Splice_Site	G	T	.
THYM	TCGA-3G-AB19-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120702560:120702739:120707499:120707553:120732667:120732743,	120707500	120707553	120707498	120707498	Splice_Site	A	G	.
THYM	TCGA-XU-A92X-01	PEX7	ENST00000318471.4	chr6	137187764:137187871:137191027:137191141:137193335:137193391,	137191028	137191141	137191027	137191027	Splice_Site	G	T	.
THYM	TCGA-XU-A92Q-01	HMGN3	ENST00000344726.5,ENST00000275036.7	chr6	79913296:79913347:79918263:79918293:79924688:79924732,	79918264	79918293	79918263	79918263	Splice_Site	C	T	.
THYM	TCGA-XU-A92Q-01	MYH10	ENST00000396239.1,ENST00000360416.3	chr17	8424409:8424603:8433940:8434003:8438704:8438819,	8433941	8434003	8433940	8433940	Splice_Site	C	T	.
THYM	TCGA-XU-A92Q-01	PIWIL4	ENST00000299001.6	chr11	94334960:94335145:94337149:94337222:94340604:94340805,	94337150	94337222	94337149	94337149	Splice_Site	G	A	.
THYM	TCGA-XM-A8R9-01	TEAD2	ENST00000539846.1,ENST00000593945.1,ENST00000598810.1	chr19	49858568:49858676:49859215:49859227:49860508:49860512,	49859216	49859227	49859215	49859215	Splice_Site	C	T	.
THYM	TCGA-YT-A95F-01	UBE3C	ENST00000348165.5,ENST00000470408.1	chr7	157023773:157024021:157041061:157041274:157046647:157046836,	157041062	157041274	157041061	157041061	Splice_Site	G	T	.
THYM	TCGA-XU-A92U-01	DGKA	ENST00000432422.3,ENST00000394147.1	chr12	56325891:56325907:56330206:56330351:56330800:56330814,56325946:56326039:56330206:56330351:56330800:56330814,	56330207	56330351	56330205	56330205	Splice_Site	A	G	.
THYM	TCGA-XU-A92U-01	FRY	ENST00000380250.3	chr13	32698931:32699012:32705808:32705977:32709040:32709133,	32705809	32705977	32705978	32705978	Splice_Site	G	T	.
THYM	TCGA-ZB-A961-01	CMYA5	ENST00000446378.2	chr5	79057633:79057780:79058884:79059032:79084793:79084927,	79058885	79059032	79058884	79058884	Splice_Site	G	A	.
THYM	TCGA-X7-A8DC-01	PGK1	ENST00000491291.1,ENST00000537456.1,ENST00000373316.4	chrX	77372808:77372912:77373547:77373667:77378331:77378400,	77373548	77373667	77373668	77373668	Splice_Site	G	T	.
THYM	TCGA-X7-A8DC-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189866261:189866315:189867023:189867077:189867680:189867755,	189867024	189867077	189867023	189867023	Splice_Site	G	T	.
THYM	TCGA-ZT-A8OM-01	SENP2	ENST00000413407.1,ENST00000459883.1,ENST00000473760.1,ENST00000545472.1,ENST00000427465.2,ENST00000296257.5	chr3	185327034:185327138:185329438:185329533:185330394:185330446,	185329439	185329533	185329535	185329535	Splice_Site	T	C	.
THYM	TCGA-3G-AB0T-01	MYO1D	ENST00000579584.1,ENST00000394649.4,ENST00000318217.5,ENST00000577352.1	chr17	30932104:30932259:30965739:30965853:30980860:30980962,	30965740	30965853	30965739	30965739	Splice_Site	C	T	.
THYM	TCGA-5U-AB0D-01	PHF10	ENST00000480008.1,ENST00000339209.4	chr6	170118883:170119014:170121100:170121207:170123940:170124027,	170121101	170121207	170121100	170121100	Splice_Site	C	-	.
THYM	TCGA-5U-AB0D-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047805	96047805	Splice_Site	G	T	.
THYM	TCGA-5U-AB0D-01	CALY	ENST00000368555.3,ENST00000368556.2	chr10	135141408:135141519:135142358:135142513:135150337:135150376,	135142359	135142513	135142515	135142515	Splice_Site	T	A	.
THYM	TCGA-X7-A8M7-01	RAD51C	ENST00000584804.1	chr17	56801400:56801461:56809844:56809905:56811478:56811590,56798106:56798173:56809844:56809905:56811478:56811590,	56809845	56809905	56809843	56809843	Splice_Site	A	G	.
THYM	TCGA-XM-A8R8-01	CDC27	ENST00000573550.1	chr17	45232120:45232152:45234278:45234349:45234595:45234633,	45234279	45234349	45234278	45234278	Splice_Site	C	A	.
THYM	TCGA-XM-A8R8-01	CDC27	ENST00000570818.1,ENST00000066544.3,ENST00000526866.1,ENST00000527547.1,ENST00000533415.1,ENST00000525495.2,ENST00000446365.2,ENST00000531206.1	chr17	45232120:45232152:45234278:45234490:45234595:45234633,	45234279	45234490	45234278	45234278	Splice_Site	C	A	.
THYM	TCGA-ZB-A96A-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2,ENST00000430789.1	chr2	100288999:100289051:100343538:100343590:100360565:100360602,	100343539	100343590	100343538	100343538	Splice_Site	C	A	.
THYM	TCGA-X7-A8M3-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183201786:183201992:183203501:183203581:183204709:183204865,	183203502	183203581	183203501	183203501	Splice_Site	G	T	.
THYM	TCGA-YT-A95E-01	POLR3B	ENST00000549569.1,ENST00000539066.1,ENST00000228347.4	chr12	106786808:106786931:106799634:106799754:106804603:106804738,	106799635	106799754	106799755	106799755	Splice_Site	G	C	.
THYM	TCGA-XM-A8RE-01	DUOX2	ENST00000603300.1,ENST00000389039.6	chr15	45392247:45392426:45392952:45393036:45393402:45393472,	45392953	45393036	45393038	45393038	Splice_Site	T	C	.
THYM	TCGA-XM-A8RE-01	ACTR3B	ENST00000256001.8,ENST00000537264.1,ENST00000397282.2,ENST00000479402.1	chr7	152549210:152549336:152550578:152550662:152551542:152551973,	152550579	152550662	152550578	152550578	Splice_Site	G	A	.
THYM	TCGA-ZC-AAA7-01	NUDT7	ENST00000564085.1	chr16	77759327:77759481:77769724:77769883:77775478:77775721,77759327:77759481:77769724:77769883:77770546:77770640,	77769725	77769883	77769724	77769724	Splice_Site	G	T	.
THYM	TCGA-ZC-AAA7-01	CHL1	ENST00000453040.1,ENST00000397491.2,ENST00000256509.2	chr3	436375:436555:439909:440068:440699:440831,	439910	440068	440069	440069	Splice_Site	G	C	.
THYM	TCGA-ZC-AAA7-01	NVL	ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000361463.3,ENST00000469075.1,ENST00000281701.6	chr1	224463040:224463160:224468824:224468887:224473727:224473832,	224468825	224468887	224468823	224468823	Splice_Site	A	T	.
THYM	TCGA-ZB-A96H-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918990	1918990	Splice_Site	G	T	.
THYM	TCGA-ZB-A96H-01	USP42	ENST00000306177.5,ENST00000465073.2,ENST00000521713.1,ENST00000479544.2,ENST00000426246.2	chr7	6185146:6185287:6185778:6185879:6187369:6187523,	6185779	6185879	6185777	6185777	Splice_Site	A	G	.
THYM	TCGA-X7-A8DE-01	CD36	ENST00000419819.2,ENST00000394788.3,ENST00000432207.1,ENST00000435819.1,ENST00000433696.2,ENST00000447544.2,ENST00000309881.7,ENST00000534394.1,ENST00000544133.1	chr7	80290445:80290526:80292305:80292485:80293721:80293813,	80292306	80292485	80292304	80292304	Splice_Site	A	T	.
THYM	TCGA-X7-A8DE-01	CD38	ENST00000226279.3,ENST00000510674.1,ENST00000502843.1	chr4	15835839:15835925:15839714:15839788:15841648:15841741,	15839715	15839788	15839713	15839713	Splice_Site	A	G	.
THYM	TCGA-X7-A8M8-01	SLC25A13	ENST00000416240.2,ENST00000265631.5,ENST00000542654.1	chr7	95818605:95818690:95818892:95818986:95820420:95820549,	95818893	95818986	95818988	95818988	Splice_Site	T	A	.
THYM	TCGA-XU-A933-01	IGF2BP3	ENST00000476938.1,ENST00000468263.1,ENST00000466809.2,ENST00000258729.3	chr7	23401152:23401216:23401308:23401360:23458394:23458443,	23401309	23401360	23401361	23401361	Splice_Site	C	A	.
THYM	TCGA-XU-A933-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1,ENST00000470504.1	chr7	121676653:121676736:121678808:121678943:121679507:121679638,	121678809	121678943	121678944	121678944	Splice_Site	G	T	.
THYM	TCGA-4X-A9F9-01	ANKRD12	ENST00000262126.4,ENST00000540578.2	chr18	9182383:9182517:9195548:9195696:9208654:9208741,9182383:9182517:9195548:9195696:9204473:9204542,	9195549	9195696	9195697	9195697	Splice_Site	G	T	.
THYM	TCGA-4X-A9FC-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52675969:52676061:52677263:52677359:52678719:52678805,	52677264	52677359	52677263	52677263	Splice_Site	C	A	.
THYM	TCGA-4X-A9FC-01	TTLL9	ENST00000375938.4,ENST00000535842.1,ENST00000310998.4,ENST00000375934.4	chr20	30497539:30497725:30507666:30507735:30510765:30510856,	30507667	30507735	30507666	30507666	Splice_Site	G	A	.
THYM	TCGA-4X-A9FC-01	SLC2A13	ENST00000280871.4,ENST00000465517.1	chr12	40223904:40224030:40258563:40258684:40265599:40265683,	40258564	40258684	40258685	40258685	Splice_Site	C	T	.
THYM	TCGA-4X-A9FC-01	PDE8A	ENST00000310298.4,ENST00000394553.1,ENST00000557957.1	chr15	85626786:85626875:85634274:85634412:85641178:85641267,85632568:85632647:85634274:85634412:85641178:85641267,	85634275	85634412	85634413	85634413	Splice_Site	G	T	.
THYM	TCGA-ZB-A96V-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62940676:62940852:62943447:62943610:62946660:62946954,	62943448	62943610	62943446	62943446	Splice_Site	A	T	.
THYM	TCGA-ZB-A96V-01	PTDSS1	ENST00000337004.4,ENST00000517309.1,ENST00000522072.1,ENST00000455950.2	chr8	97318671:97318784:97321784:97321850:97332473:97332573,	97321785	97321850	97321784	97321784	Splice_Site	G	T	.
THYM	TCGA-ZB-A96V-01	FAM20B	ENST00000263733.4	chr1	179019413:179019500:179023663:179023773:179033061:179033233,	179023664	179023773	179023774	179023774	Splice_Site	G	T	.
THYM	TCGA-4X-A9FA-01	SHC3	ENST00000375830.1,ENST00000375835.4	chr9	91680443:91680495:91686113:91686167:91690023:91690143,	91686114	91686167	91686113	91686113	Splice_Site	C	T	.
THYM	TCGA-4V-A9QS-01	SCAMP1	ENST00000339292.4,ENST00000508822.1	chr5	77717624:77717784:77745756:77745857:77755067:77755185,	77745757	77745857	77745859	77745859	Splice_Site	T	G	.
THYM	TCGA-XM-A8RL-01	CCAR1	ENST00000543225.1	chr10	70500385:70500418:70502132:70502326:70506917:70507032,70496632:70496805:70502132:70502326:70506917:70507032,	70502133	70502326	70502132	70502132	Splice_Site	G	T	.
THYM	TCGA-XU-A92O-01	CEP192	ENST00000511820.2,ENST00000510237.1,ENST00000506447.1,ENST00000430049.2,ENST00000325971.8,ENST00000589596.1	chr18	13056629:13056697:13057583:13057732:13059080:13059212,	13057584	13057732	13057733	13057733	Splice_Site	G	T	.
THYM	TCGA-ZB-A96I-01	NISCH	ENST00000345716.4,ENST00000479054.1	chr3	52523500:52523694:52524090:52524247:52524720:52524849,	52524091	52524247	52524090	52524090	Splice_Site	G	T	.
THYM	TCGA-XU-AAXY-01	CCDC138	ENST00000295124.4,ENST00000412964.2	chr2	109404487:109404545:109405307:109405422:109408130:109408258,	109405308	109405422	109405423	109405423	Splice_Site	G	T	.
THYM	TCGA-X7-A8M0-01	XPO1	ENST00000437159.1	chr2	61725999:61726048:61726847:61727029:61749745:61749818,	61726848	61727029	61726846	61726846	Splice_Site	G	T	.
THYM	TCGA-XM-A8RF-01	SLC22A17	ENST00000474774.1	chr14	23816367:23816421:23816668:23816940:23817099:23817205,23816367:23816421:23816668:23816940:23817369:23817430,	23816669	23816940	23816667	23816667	Splice_Site	A	C	.
THYM	TCGA-5U-AB0D-01	CALY	ENST00000368555.3,ENST00000368556.2	chr10	135141408:135141519:135142358:135142513:135150337:135150376,	135142359	135142513	135142515	135142515	Splice_Site	T	A	e1-2
THYM	TCGA-5U-AB0D-01	PHF10	ENST00000480008.1,ENST00000339209.4	chr6	170118883:170119014:170121100:170121207:170123940:170124027,	170121101	170121207	170121100	170121100	Splice_Site	C	-	e2+1
THYM	TCGA-X7-A8M3-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64868114	64868114	Splice_Site	G	-	e5+1
THYM	TCGA-5G-A9ZZ-01	ZNF311	ENST00000483450.1	chr6	28971289:28971371:28971674:28971842:28972784:28973037,	28971675	28971842	28971674	28971674	Splice_Site	C	T	NULL
THYM	TCGA-ZC-AAA7-01	CHL1	ENST00000453040.1,ENST00000397491.2,ENST00000256509.2	chr3	436375:436555:439909:440068:440699:440831,	439910	440068	440069	440069	Splice_Site	G	C	e23+1
THYM	TCGA-X7-A8M5-01	EPB41L1	ENST00000452261.1	chr20	34700347:34700402:34761685:34761876:34763472:34763593,34742671:34742818:34761685:34761876:34763472:34763593,34680653:34680735:34761685:34761876:34763472:34763593,34701614:34701721:34761685:34761876:34763472:34763593,	34761686	34761876	34761684	34761684	Splice_Site	A	G	e1-2
THYM	TCGA-ZB-A96I-01	NISCH	ENST00000345716.4,ENST00000479054.1	chr3	52523500:52523694:52524090:52524247:52524720:52524849,	52524091	52524247	52524090	52524090	Splice_Site	G	T	e18-1
THYM	TCGA-ZB-A966-01	GGT7	ENST00000469018.1	chr20	33437770:33437863:33438584:33438720:33439033:33439119,	33438585	33438720	33438722	33438722	Splice_Site	T	C	NULL
THYM	TCGA-ZB-A966-01	CELSR1	ENST00000262738.3	chr22	46832092:46832186:46835085:46835308:46859603:46860242,	46835086	46835308	46835085	46835085	Splice_Site	C	T	e3+1
THYM	TCGA-XM-A8RD-01	PIK3R1	ENST00000320694.8	chr5	67586509:67586662:67588086:67588189:67588928:67589027,67584522:67584579:67588086:67588189:67588928:67589027,	67588087	67588189	67588086	67588086	Splice_Site	G	A	e7-1
THYM	TCGA-XM-A8R9-01	TEAD2	ENST00000539846.1,ENST00000593945.1,ENST00000598810.1	chr19	49858568:49858676:49859215:49859227:49860508:49860512,	49859216	49859227	49859215	49859215	Splice_Site	C	T	e0+1
THYM	TCGA-XU-AAXY-01	NUDCD2	ENST00000302764.4	chr5	162880928:162881056:162883934:162884086:162884567:162884616,	162883935	162884086	162884088	162884089	Splice_Site	-	A	e3-2
THYM	TCGA-XM-A8RF-01	SLC22A17	ENST00000474774.1	chr14	23816367:23816421:23816668:23816940:23817099:23817205,23816367:23816421:23816668:23816940:23817369:23817430,	23816669	23816940	23816667	23816667	Splice_Site	A	C	e7+2
UCEC	TCGA-A5-A0G5-01	LACTB2	ENST00000276590.4	chr8	71569990:71570117:71573968:71574132:71581233:71581392,	71573969	71574132	71573967	71573967	Splice_Site	A	C	p.D96_splice
UCEC	TCGA-A5-A0G5-01	ITIH2	ENST00000379587.4,ENST00000477751.1,ENST00000358415.4	chr10	7771914:7772096:7773773:7773959:7774300:7774436,	7773774	7773959	7773961	7773961	Splice_Site	T	A	p.S549_splice
UCEC	TCGA-A5-A0G9-01	NLN	ENST00000506539.1,ENST00000502464.1,ENST00000380985.5	chr5	65058786:65058935:65073253:65073361:65076005:65076108,	65073254	65073361	65073252	65073252	Splice_Site	A	T	p.E151_splice
UCEC	TCGA-A5-A0G9-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877011	16877011	Splice_Site	A	G	p.E3454_splice
UCEC	TCGA-A5-A0G9-01	PARP4	ENST00000381989.3	chr13	25068710:25068860:25072253:25072367:25073438:25073514,	25072254	25072367	25072253	25072253	Splice_Site	C	A	p.E197_splice
UCEC	TCGA-A5-A0G9-01	ABCA6	ENST00000284425.2,ENST00000446604.2	chr17	67075350:67075406:67077206:67077286:67079013:67079154,	67077207	67077286	67077287	67077287	Splice_Site	C	A	p.R1539_splice
UCEC	TCGA-A5-A0G9-01	SLC44A2	ENST00000588393.1,ENST00000407327.4,ENST00000588465.1,ENST00000335757.5,ENST00000586078.1	chr19	10742543:10742627:10742719:10742832:10745431:10745552,	10742720	10742832	10742833	10742833	Splice_Site	G	C	p.G275_splice
UCEC	TCGA-A5-A0G9-01	URI1	ENST00000574110.1,ENST00000312051.6	chr19	30433424:30433571:30476129:30476208:30477188:30477284,	30476130	30476208	30476209	30476209	Splice_Site	G	T	p.M77_splice
UCEC	TCGA-A5-A0G9-01	VSIG1	ENST00000217957.5,ENST00000415430.3	chrX	107316025:107316062:107316479:107316599:107319306:107319448,	107316480	107316599	107316600	107316600	Splice_Site	G	A	p.H266_splice
UCEC	TCGA-A5-A0GA-01	DNER	ENST00000341772.4	chr2	230231588:230231835:230252980:230253112:230271947:230272061,	230252981	230253112	230252980	230252980	Splice_Site	C	T	p.H619_splice
UCEC	TCGA-A5-A0GB-01	MARCH6	ENST00000511802.1,ENST00000507863.1,ENST00000274140.5,ENST00000510872.1	chr5	10378870:10378944:10381911:10382055:10387105:10387178,	10381912	10382055	10382056	10382056	Splice_Site	G	A	p.C112_splice
UCEC	TCGA-A5-A0GB-01	VEGFA	ENST00000523873.1,ENST00000372055.4	chr6	43746625:43746655:43748468:43748591:43749692:43749789,	43748469	43748591	43748592	43748592	Splice_Site	G	A	p.H362_splice
UCEC	TCGA-A5-A0GB-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232114:26232197:26232870:26232993:26233194:26233314,	26232871	26232993	26232995	26232995	Splice_Site	T	C	p.G293_splice
UCEC	TCGA-A5-A0GB-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717609	89717609	Splice_Site	G	T	p.N212_splice
UCEC	TCGA-A5-A0GH-01	M6PR	ENST00000000412.3,ENST00000543834.1	chr12	9096025:9096131:9096396:9096506:9098013:9098075,	9096397	9096506	9096396	9096396	Splice_Site	C	A	p.A151_splice
UCEC	TCGA-A5-A0GH-01	CAPS2	ENST00000328705.3,ENST00000409799.1,ENST00000336815.6,ENST00000409004.1,ENST00000442339.2,ENST00000393284.3,ENST00000409445.3	chr12	75678740:75678860:75683400:75683555:75685523:75685600,	75683401	75683555	75683399	75683399	Splice_Site	A	G	p.K465_splice
UCEC	TCGA-A5-A0GH-01	TAOK3	ENST00000537305.1,ENST00000535570.1,ENST00000419821.2,ENST00000392533.3	chr12	118675906:118675974:118677031:118677077:118681219:118681253,	118677032	118677077	118677078	118677078	Splice_Site	C	G	p.L99_splice
UCEC	TCGA-A5-A0GH-01	AP4E1	ENST00000561393.1,ENST00000558439.1,ENST00000261842.5,ENST00000560508.1	chr15	51260459:51260574:51276218:51276342:51285566:51285822,	51276219	51276342	51276218	51276218	Splice_Site	G	A	p.V656_splice
UCEC	TCGA-A5-A0GH-01	COG7	ENST00000307149.5	chr16	23445956:23446039:23453797:23453966:23456368:23456485,	23453798	23453966	23453967	23453967	Splice_Site	C	A	p.D146_splice
UCEC	TCGA-A5-A0GH-01	CMTM3	ENST00000424011.2,ENST00000460097.1,ENST00000562707.1,ENST00000565003.1,ENST00000568477.1,ENST00000566121.1,ENST00000567572.1,ENST00000361909.4	chr16	66642272:66642367:66643337:66643433:66643785:66643906,	66643338	66643433	66643336	66643336	Splice_Site	A	G	p.D102_splice
UCEC	TCGA-A5-A0GM-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645517	67645517	Splice_Site	G	A	p.G261_splice
UCEC	TCGA-A5-A0GU-01	RASGRP1	ENST00000559830.1,ENST00000558432.1,ENST00000558164.1,ENST00000310803.5,ENST00000450598.2,ENST00000561180.1,ENST00000539159.1,ENST00000414708.2	chr15	38799926:38800202:38803804:38803921:38804983:38805157,	38803805	38803921	38803803	38803803	Splice_Site	A	G	p.K322_splice
UCEC	TCGA-A5-A0GW-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000272273.5,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33590408:33590570:33614250:33614373:33622199:33622349,	33614251	33614373	33614375	33614375	Splice_Site	T	C	p.R1612_splice
UCEC	TCGA-A5-A0GW-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4,ENST00000392202.3,ENST00000407449.1,ENST00000308862.6,ENST00000452564.1	chr2	209165660:209165818:209166965:209167077:209168894:209169042,	209166966	209167077	209167079	209167079	Splice_Site	T	C	p.Q440_splice
UCEC	TCGA-A5-A0R7-01	PDLIM1	ENST00000477757.1,ENST00000329399.6	chr10	97006971:97007123:97023620:97023820:97028534:97028619,	97023621	97023820	97023620	97023620	Splice_Site	C	T	p.P178_splice
UCEC	TCGA-A5-A0R7-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000551662.1,ENST00000258530.3	chr12	105591541:105591658:105593150:105593309:105597480:105597563,105591542:105591731:105593150:105593309:105597480:105597563,	105593151	105593309	105593311	105593311	Splice_Site	T	C	p.S241_splice
UCEC	TCGA-A5-A0R9-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	p.E244_splice
UCEC	TCGA-A5-A0VO-01	WDR66	ENST00000397454.2,ENST00000288912.4	chr12	122386889:122386967:122389385:122389436:122392025:122392240,	122389386	122389436	122389385	122389385	Splice_Site	G	A	p.Y424_splice
UCEC	TCGA-A5-A0VQ-01	NPAS2	ENST00000542504.1,ENST00000335681.5	chr2	101581322:101581405:101582121:101582228:101584742:101584890,	101582122	101582228	101582229	101582229	Splice_Site	G	A	p.L368_splice
UCEC	TCGA-A5-A0VQ-01	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000394227.3,ENST00000527525.1	chr11	65408301:65409071:65409720:65409848:65409933:65410024,	65409721	65409848	65409720	65409720	Splice_Site	G	A	p.E227_splice
UCEC	TCGA-A5-A0VQ-01	TBRG1	ENST00000530731.1,ENST00000375005.4,ENST00000284290.4	chr11	124494826:124494897:124495566:124495799:124496708:124496946,124494826:124494897:124495566:124495799:124496799:124496831,	124495567	124495799	124495566	124495566	Splice_Site	G	T	p.R74_splice
UCEC	TCGA-AP-A05N-01	FCRL5	ENST00000361835.3,ENST00000368190.3,ENST00000368189.3	chr1	157516002:157516070:157516732:157516987:157519349:157519370,157514620:157514872:157516732:157516987:157519349:157519370,	157516733	157516987	157516731	157516731	Splice_Site	A	G	p.A103_splice
UCEC	TCGA-AP-A05N-01	HCLS1	ENST00000314583.3,ENST00000473883.1,ENST00000428394.2	chr3	121350947:121351031:121351178:121351410:121351913:121352018,	121351179	121351410	121351412	121351412	Splice_Site	T	C	p.D337_splice
UCEC	TCGA-AP-A05N-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142222203:142222295:142223980:142224145:142226772:142226951,	142223981	142224145	142224146	142224146	Splice_Site	C	T	p.K1678_splice
UCEC	TCGA-AP-A05N-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152545628:152545799:152546855:152547011:152551681:152551837,	152546856	152547011	152546854	152546854	Splice_Site	A	G	p.M7117_splice
UCEC	TCGA-AP-A05N-01	SNX8	ENST00000457286.1,ENST00000435060.1,ENST00000479689.1,ENST00000435336.1,ENST00000222990.3	chr7	2304074:2304093:2309193:2309274:2311484:2311531,	2309194	2309274	2309275	2309275	Splice_Site	C	A	p.D181_splice
UCEC	TCGA-AP-A05N-01	FLI1	ENST00000534087.2,ENST00000344954.6,ENST00000281428.8,ENST00000429175.3,ENST00000525560.1,ENST00000608303.1,ENST00000527786.2	chr11	128651852:128651918:128675260:128675326:128677074:128677134,	128675261	128675326	128675260	128675260	Splice_Site	G	T	p.D219_splice
UCEC	TCGA-AP-A05N-01	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78592384:78592456:78593114:78593311:78594252:78594342,	78593115	78593311	78593312	78593312	Splice_Site	G	A	p.G2239_splice
UCEC	TCGA-AP-A05N-01	PSMB6	ENST00000270586.3	chr17	4700022:4700090:4700732:4700864:4700976:4701106,	4700733	4700864	4700732	4700732	Splice_Site	G	T	p.G57_splice
UCEC	TCGA-AP-A0L8-01	IL17RE	ENST00000421412.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3,ENST00000383815.3,ENST00000434065.1	chr3	9952940:9952984:9953126:9953281:9955639:9955708,	9953127	9953281	9953125	9953125	Splice_Site	A	C	p.G398_splice
UCEC	TCGA-AP-A0LE-01	ARNT	ENST00000515192.1,ENST00000354396.2,ENST00000505755.1,ENST00000358595.5	chr1	150785647:150785814:150786552:150786715:150788734:150788876,	150786553	150786715	150786552	150786552	Splice_Site	C	T	p.A705_splice
UCEC	TCGA-AP-A0LE-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58937330:58937441:58938916:58938997:58941324:58941515,	58938917	58938997	58938915	58938915	Splice_Site	A	G	p.T905_splice
UCEC	TCGA-AP-A0LE-01	RAB34	ENST00000484161.1,ENST00000395242.2,ENST00000395243.3,ENST00000583538.1,ENST00000395245.3,ENST00000301043.6,ENST00000447716.1,ENST00000430132.2,ENST00000436730.3,ENST00000415040.2,ENST00000450529.1	chr17	27041690:27041728:27041810:27041918:27042049:27042140,	27041811	27041918	27041810	27041810	Splice_Site	C	T	p.R295_splice
UCEC	TCGA-AP-A0LE-01	KHSRP	ENST00000595112.1,ENST00000595548.1,ENST00000398148.3,ENST00000595258.1	chr19	6420083:6420155:6420432:6420482:6421288:6421328,	6420433	6420482	6420483	6420483	Splice_Site	C	A	p.R142_splice
UCEC	TCGA-AP-A0LE-01	TCN2	ENST00000215838.3,ENST00000405742.3,ENST00000450638.1	chr22	31008871:31009029:31010335:31010488:31011287:31011460,	31010336	31010488	31010334	31010334	Splice_Site	A	G	p.G143_splice
UCEC	TCGA-AP-A0LF-01	TSPAN19	ENST00000552392.1	chr12	85417103:85417178:85421676:85421801:85423496:85423569,85418429:85418550:85421676:85421801:85423496:85423569,	85421677	85421801	85421802	85421802	Splice_Site	C	A	p.D47_splice
UCEC	TCGA-AP-A0LF-01	PRC1	ENST00000394249.3,ENST00000442656.2,ENST00000555455.1,ENST00000361188.5,ENST00000361919.3	chr15	91512805:91512853:91513633:91513744:91517365:91517476,	91513634	91513744	91513633	91513633	Splice_Site	C	G	p.K524_splice
UCEC	TCGA-AP-A0LG-01	SERINC5	ENST00000512721.1,ENST00000512972.2,ENST00000509193.1	chr5	79473707:79473886:79498704:79498872:79551714:79551838,	79498705	79498872	79498704	79498704	Splice_Site	C	T	p.H65_splice
UCEC	TCGA-AP-A0LG-01	ADAMTSL1	ENST00000380566.4,ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18635940:18636015:18639251:18639409:18657636:18657748,	18639252	18639409	18639251	18639251	Splice_Site	G	T	p.Y226_splice
UCEC	TCGA-AP-A0LL-01	RHCE	ENST00000349438.4	chr1	25712201:25712335:25715466:25715604:25729086:25729193,25712201:25712335:25715466:25715604:25717239:25717406,25701839:25701919:25715466:25715604:25717239:25717406,	25715467	25715604	25715466	25715466	Splice_Site	C	A	p.P313_splice
UCEC	TCGA-AP-A0LO-01	M6PR	ENST00000000412.3,ENST00000543834.1	chr12	9096025:9096131:9096396:9096506:9098013:9098075,	9096397	9096506	9096396	9096396	Splice_Site	C	A	p.A151_splice
UCEC	TCGA-AP-A0LO-01	CCL25	ENST00000315626.4,ENST00000458625.1	chr19	8117933:8118006:8121035:8121153:8121249:8121343,8117933:8118006:8121035:8121153:8122684:8122748,	8121036	8121153	8121154	8121154	Splice_Site	G	A	p.I64_splice
UCEC	TCGA-AP-A0LQ-01	MCRS1	ENST00000551625.1,ENST00000343810.4,ENST00000551598.1,ENST00000357123.4,ENST00000548602.1,ENST00000550165.1,ENST00000546244.1,ENST00000547182.1	chr12	49952996:49953084:49953235:49953318:49953511:49953563,	49953236	49953318	49953235	49953235	Splice_Site	C	A	p.E375_splice
UCEC	TCGA-AP-A0LT-01	SNRPC	ENST00000374018.1,ENST00000474635.1,ENST00000374017.3,ENST00000244520.5	chr6	34730371:34730480:34735684:34735774:34738067:34738172,	34735685	34735774	34735775	34735775	Splice_Site	G	A	p.P84_splice
UCEC	TCGA-AP-A0LT-01	ABCA1	ENST00000374736.3	chr9	107565564:107565597:107566906:107567001:107568521:107568711,	107566907	107567001	107566905	107566905	Splice_Site	A	G	p.S1520_splice
UCEC	TCGA-AP-A0LT-01	CFL2	ENST00000298159.6	chr14	35182265:35182342:35182459:35182767:35183743:35183783,	35182460	35182767	35182459	35182459	Splice_Site	C	T	p.W104_splice
UCEC	TCGA-AX-A05Y-01	NEB	ENST00000413693.1,ENST00000509223.2	chr2	152352818:152352882:152359862:152359955:152361991:152362084,	152359863	152359955	152359956	152359956	Splice_Site	C	A	p.V6214_splice
UCEC	TCGA-AX-A064-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000376871.3,ENST00000449912.2,ENST00000451710.3,ENST00000376872.3	chr9	77347600:77347652:77353322:77353528:77354282:77354365,	77353323	77353528	77353322	77353322	Splice_Site	C	T	p.G1926_splice
UCEC	TCGA-AX-A064-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717778	89717778	Splice_Site	T	C	p.K267_splice
UCEC	TCGA-AX-A064-01	DHODH	ENST00000573922.1	chr16	72048371:72048571:72050922:72051005:72055022:72055091,72048371:72048571:72050922:72051005:72058043:72058137,72048371:72048571:72050922:72051005:72057063:72057177,	72050923	72051005	72050921	72050921	Splice_Site	A	G	p.R145_splice
UCEC	TCGA-AX-A06B-01	EPCAM	ENST00000263735.4	chr2	47596613:47596720:47600601:47600709:47600946:47601132,	47600602	47600709	47600710	47600710	Splice_Site	G	C	p.L62_splice
UCEC	TCGA-AX-A06H-01	MNDA	ENST00000368141.4	chr1	158813744:158813912:158815376:158815793:158817517:158817679,	158815377	158815793	158815795	158815795	Splice_Site	T	C	p.K329_splice
UCEC	TCGA-AX-A06H-01	TET2	ENST00000380013.4,ENST00000540549.1,ENST00000513237.1	chr4	106155053:106158508:106162495:106162586:106163990:106164084,	106162496	106162586	106162494	106162494	Splice_Site	A	C	p.E1158_splice
UCEC	TCGA-AX-A06H-01	CHMP7	ENST00000517325.1,ENST00000397677.1,ENST00000523091.1,ENST00000520102.1,ENST00000519503.1,ENST00000313219.7	chr8	23115588:23115594:23115842:23115962:23116244:23116343,	23115843	23115962	23115841	23115841	Splice_Site	A	G	p.A281_splice
UCEC	TCGA-AX-A06H-01	DLST	ENST00000334212.6,ENST00000238671.7,ENST00000334220.4,ENST00000554612.1	chr14	75366991:75367075:75367768:75367936:75368898:75369155,	75367769	75367936	75367937	75367937	Splice_Site	G	T	p.K409_splice
UCEC	TCGA-AX-A06H-01	NRK	ENST00000243300.9,ENST00000428173.2,ENST00000536164.1	chrX	105124191:105124248:105125700:105125772:105132286:105132412,	105125701	105125772	105125773	105125773	Splice_Site	G	A	p.S84_splice
UCEC	TCGA-AX-A0IS-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	p.E244_splice
UCEC	TCGA-AX-A0IU-01	OSBPL6	ENST00000477097.1,ENST00000357080.4,ENST00000359685.3,ENST00000409045.3,ENST00000392505.2,ENST00000409631.1,ENST00000190611.4,ENST00000315022.2	chr2	179192982:179193105:179196278:179196332:179197367:179197428,	179196279	179196332	179196278	179196278	Splice_Site	G	T	p.R107_splice
UCEC	TCGA-AX-A0IU-01	LEMD2	ENST00000293760.5,ENST00000512368.1,ENST00000421671.2,ENST00000508327.1,ENST00000514636.1,ENST00000513701.1	chr6	33747876:33747956:33748853:33748930:33752128:33752204,	33748854	33748930	33748853	33748853	Splice_Site	C	T	p.A310_splice
UCEC	TCGA-B5-A0JN-01	RHCE	ENST00000349438.4	chr1	25712201:25712335:25715466:25715604:25729086:25729193,25712201:25712335:25715466:25715604:25717239:25717406,25701839:25701919:25715466:25715604:25717239:25717406,	25715467	25715604	25715466	25715466	Splice_Site	C	A	p.P313_splice
UCEC	TCGA-B5-A0JN-01	MAP4	ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47898920:47899002:47908735:47908828:47912302:47912595,47898920:47899002:47908735:47908828:47910703:47910817,	47908736	47908828	47908735	47908735	Splice_Site	C	T	p.N1022_splice
UCEC	TCGA-B5-A0JN-01	BACE1	ENST00000530824.1,ENST00000428381.2,ENST00000445823.2,ENST00000513780.1,ENST00000392937.6,ENST00000509916.1,ENST00000510630.1,ENST00000313005.6	chr11	117161349:117161375:117161615:117161765:117162427:117162529,	117161616	117161765	117161767	117161767	Splice_Site	T	A	p.T315_splice
UCEC	TCGA-B5-A0JR-01	NFYC	ENST00000372654.1,ENST00000440226.3,ENST00000372653.1,ENST00000447388.3,ENST00000427410.2,ENST00000372651.1	chr1	41232267:41232375:41235027:41235087:41236380:41236612,	41235028	41235087	41235026	41235026	Splice_Site	A	T	p.I296_splice
UCEC	TCGA-B5-A0JR-01	NDUFC1	ENST00000539387.1,ENST00000394228.1,ENST00000539002.1,ENST00000503453.1,ENST00000265500.4,ENST00000394223.1,ENST00000394225.2,ENST00000505036.1,ENST00000544855.1	chr4	140211184:140211246:140213683:140213763:140216196:140216294,	140213684	140213763	140213765	140213765	Splice_Site	T	C	p.L58_splice
UCEC	TCGA-B5-A0JR-01	CDK17	ENST00000543119.2	chr12	96717743:96717890:96728496:96728643:96793763:96793852,	96728497	96728643	96728495	96728495	Splice_Site	A	G	p.E40_splice
UCEC	TCGA-B5-A0JR-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000539828.2,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68191861:68191971:68200745:68200918:68208276:68208417,	68200746	68200918	68200744	68200744	Splice_Site	A	G	p.S534_splice
UCEC	TCGA-B5-A0JV-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97860462:97860491:97860581:97860654:97862329:97862358,	97860582	97860654	97860581	97860581	Splice_Site	G	T	p.A827_splice
UCEC	TCGA-B5-A0JV-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000309536.2,ENST00000522181.1	chr8	92355580:92355694:92364037:92364115:92365128:92365224,	92364038	92364115	92364037	92364037	Splice_Site	G	A	p.V381_splice
UCEC	TCGA-B5-A0JV-01	VPS53	ENST00000573028.1,ENST00000437048.2,ENST00000576149.1,ENST00000291074.5,ENST00000446250.2,ENST00000570650.1,ENST00000571805.1	chr17	526772:526914:530413:530556:531327:531471,	530414	530556	530558	530558	Splice_Site	T	C	p.V278_splice
UCEC	TCGA-B5-A0JV-01	ZNF18	ENST00000580306.2,ENST00000322748.3	chr17	11881655:11882061:11886613:11886724:11887429:11887508,	11886614	11886724	11886725	11886725	Splice_Site	C	T	p.A251_splice
UCEC	TCGA-B5-A0JV-01	RBL1	ENST00000344359.3,ENST00000525052.1,ENST00000373664.3	chr20	35690486:35690673:35693826:35693876:35695126:35695287,	35693827	35693876	35693877	35693877	Splice_Site	C	A	p.I283_splice
UCEC	TCGA-B5-A0JV-01	GABPA	ENST00000400075.3,ENST00000354828.3	chr21	27130320:27130515:27134622:27134676:27136520:27136661,	27134623	27134676	27134677	27134677	Splice_Site	G	A	p.P268_splice
UCEC	TCGA-B5-A0JZ-01	ABCD1	ENST00000443684.1,ENST00000218104.3	chrX	153001798:153001967:153002610:153002705:153005545:153005691,	153002611	153002705	153002610	153002610	Splice_Site	G	T	p.G465_splice
UCEC	TCGA-B5-A0K0-01	ZFAND3	ENST00000287218.4	chr6	38029386:38029551:38084347:38084515:38120010:38120620,38050167:38050233:38084347:38084515:38120010:38120620,	38084348	38084515	38084517	38084517	Splice_Site	T	G	p.G177_splice
UCEC	TCGA-B5-A0K1-01	GLB1L3	ENST00000431683.2,ENST00000455971.2	chr11	134180464:134180545:134180957:134181064:134182242:134182383,	134180958	134181064	134181065	134181065	Splice_Site	G	T	p.E429_splice
UCEC	TCGA-B5-A0K6-01	PRELID2	ENST00000510594.1	chr5	145139818:145140088:145144493:145144563:145176004:145176094,145083654:145083858:145144493:145144563:145176004:145176094,	145144494	145144563	145144564	145144564	Splice_Site	C	T	p.G171_splice
UCEC	TCGA-B5-A0K6-01	PTPRK	ENST00000368227.3,ENST00000368210.3,ENST00000525459.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128643395:128643455:128718710:128718833:128841403:128841503,	128718711	128718833	128718710	128718710	Splice_Site	C	T	p.G75_splice
UCEC	TCGA-B5-A0K6-01	PFKFB3	ENST00000540253.1,ENST00000379782.3,ENST00000379789.4,ENST00000360521.2,ENST00000477914.1,ENST00000461744.1,ENST00000490474.1,ENST00000467491.1,ENST00000379785.1,ENST00000379775.4,ENST00000317350.4	chr10	6259097:6259154:6261531:6261656:6262620:6262828,	6261532	6261656	6261658	6261658	Splice_Site	T	A	p.R208_splice
UCEC	TCGA-B5-A0K6-01	PFKFB3	ENST00000536985.1	chr10	6259097:6259154:6261481:6261656:6262620:6262828,	6261482	6261656	6261658	6261658	Splice_Site	T	A	p.R208_splice
UCEC	TCGA-B5-A0K7-01	IFI44	ENST00000370747.4,ENST00000470323.1	chr1	79125003:79125168:79126238:79126339:79128388:79128439,	79126239	79126339	79126340	79126340	Splice_Site	G	T	p.K371_splice
UCEC	TCGA-B5-A0K7-01	TTLL5	ENST00000298832.9,ENST00000554148.1,ENST00000557636.1,ENST00000554935.1	chr14	76186121:76186169:76186938:76187046:76198680:76198762,	76186939	76187046	76186938	76186938	Splice_Site	G	T	p.A312_splice
UCEC	TCGA-B5-A0K9-01	MYL1	ENST00000352451.3,ENST00000496436.1,ENST00000341685.4	chr2	211155755:211155798:211158446:211158524:211158968:211159142,	211158447	211158524	211158526	211158526	Splice_Site	T	C	p.G160_splice
UCEC	TCGA-B5-A0K9-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529461	219529461	Splice_Site	C	T	p.Q267_splice
UCEC	TCGA-B5-A0K9-01	ARHGAP26	ENST00000378004.3	chr5	142526795:142526946:142586762:142586873:142593561:142593653,	142586763	142586873	142586762	142586762	Splice_Site	G	A	p.L663_splice
UCEC	TCGA-B5-A0K9-01	ARHGAP26	ENST00000274498.4	chr5	142526795:142526946:142586762:142587038:142593561:142593653,	142586763	142587038	142586762	142586762	Splice_Site	G	A	p.L663_splice
UCEC	TCGA-B5-A0K9-01	CCDC61	ENST00000595358.1	chr19	46518602:46518685:46519311:46519481:46519575:46519651,	46519312	46519481	46519482	46519482	Splice_Site	G	A	p.G358_splice
UCEC	TCGA-B5-A0K9-01	VRK3	ENST00000596121.1,ENST00000316763.3,ENST00000424804.2,ENST00000593919.1,ENST00000594948.1,ENST00000594092.1,ENST00000596445.1,ENST00000599538.1,ENST00000597215.1,ENST00000601324.1	chr19	50511034:50511083:50512492:50512642:50519280:50519420,	50512493	50512642	50512643	50512643	Splice_Site	C	A	p.G47_splice
UCEC	TCGA-B5-A11I-01	PLK3	ENST00000372201.4	chr1	45270010:45270173:45270321:45270451:45270937:45271051,	45270322	45270451	45270453	45270453	Splice_Site	T	C	p.K545_splice
UCEC	TCGA-B5-A11I-01	FOXP4	ENST00000373060.1,ENST00000307972.4,ENST00000373057.3	chr6	41557508:41557592:41557700:41557908:41558008:41558085,	41557701	41557908	41557909	41557909	Splice_Site	G	A	p.E453_splice
UCEC	TCGA-B5-A11I-01	FOXP4	ENST00000409208.1,ENST00000373063.3	chr6	41557508:41557592:41557736:41557908:41558008:41558085,	41557737	41557908	41557909	41557909	Splice_Site	G	A	p.E453_splice
UCEC	TCGA-B5-A11I-01	SULF2	ENST00000361612.4,ENST00000495544.1	chr20	46286411:46287136:46288440:46288474:46290516:46290640,	46288441	46288474	46288475	46288475	Splice_Site	C	T	p.G832_splice
UCEC	TCGA-B5-A11O-01	NBEAL1	ENST00000449802.1	chr2	203977737:203978041:203980707:203980793:203986976:203987066,	203980708	203980793	203980794	203980794	Splice_Site	G	T	p.K835_splice
UCEC	TCGA-B5-A11O-01	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000431670.2,ENST00000412622.1	chr3	111667778:111667922:111671418:111671559:111672776:111672876,	111671419	111671559	111671417	111671417	Splice_Site	A	G	p.H878_splice
UCEC	TCGA-B5-A11S-01	FAM189A2	ENST00000303068.7,ENST00000257515.8,ENST00000460871.1,ENST00000455972.1	chr9	71990698:71990780:71992285:71992393:71992526:71992656,	71992286	71992393	71992394	71992394	Splice_Site	G	T	p.I120_splice
UCEC	TCGA-B5-A11S-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31812257:31812408:31814985:31815101:31815199:31815350,	31814986	31815101	31815103	31815103	Splice_Site	T	C	p.V306_splice
UCEC	TCGA-B5-A11X-01	AIG1	ENST00000275235.4,ENST00000458219.1,ENST00000357847.4,ENST00000367601.4	chr6	143382083:143382203:143486218:143486320:143605246:143605362,143457971:143458127:143486218:143486320:143605246:143605362,	143486219	143486320	143486321	143486321	Splice_Site	G	T	p.M133_splice
UCEC	TCGA-B5-A11X-01	M6PR	ENST00000000412.3,ENST00000543834.1	chr12	9096025:9096131:9096396:9096506:9098013:9098075,	9096397	9096506	9096396	9096396	Splice_Site	C	A	p.A151_splice
UCEC	TCGA-B5-A1MY-01	GBF1	ENST00000369983.3	chr10	104119940:104120152:104120778:104120877:104121474:104121669,	104120779	104120877	104120878	104120878	Splice_Site	G	T	p.E496_splice
UCEC	TCGA-BG-A0LX-01	WDR3	ENST00000349139.5,ENST00000369441.3	chr1	118481102:118481181:118482099:118482195:118483449:118483563,	118482100	118482195	118482099	118482099	Splice_Site	G	T	p.V194_splice
UCEC	TCGA-BG-A0LX-01	TRIP12	ENST00000487178.1,ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230668286:230668405:230668714:230668943:230670445:230670518,	230668715	230668943	230668714	230668714	Splice_Site	C	T	p.S933_splice
UCEC	TCGA-BG-A0LX-01	ADAMTS6	ENST00000381055.3,ENST00000464680.2	chr5	64569166:64569274:64587155:64587297:64595811:64595958,	64587156	64587297	64587154	64587154	Splice_Site	A	T	p.G504_splice
UCEC	TCGA-BG-A0LX-01	GSN	ENST00000432226.1,ENST00000373808.2,ENST00000436847.1,ENST00000341272.2,ENST00000545652.1,ENST00000373807.1,ENST00000412819.1,ENST00000394353.2,ENST00000373818.4,ENST00000373823.3,ENST00000449733.1	chr9	124074616:124074766:124076211:124076301:124079363:124079390,	124076212	124076301	124076302	124076302	Splice_Site	G	A	p.K302_splice
UCEC	TCGA-BG-A0LX-01	AAAS	ENST00000547238.1,ENST00000549821.1,ENST00000547520.1,ENST00000549450.1,ENST00000549983.1,ENST00000547761.2,ENST00000550286.1,ENST00000209873.4	chr12	53708183:53708225:53708534:53708633:53708877:53708911,	53708535	53708633	53708533	53708533	Splice_Site	A	G	p.S182_splice
UCEC	TCGA-BG-A0M0-01	NDUFAF6	ENST00000520757.1,ENST00000396124.4,ENST00000518258.1,ENST00000517976.1,ENST00000286687.4,ENST00000396111.2,ENST00000396113.1,ENST00000542894.1,ENST00000454358.2	chr8	96057772:96057875:96059221:96059355:96060684:96060786,	96059222	96059355	96059356	96059356	Splice_Site	G	A	p.L238_splice
UCEC	TCGA-BG-A0M0-01	LRRC19	ENST00000380055.5	chr9	26996308:26996497:26997725:26998239:26999611:26999701,	26997726	26998239	26997724	26997724	Splice_Site	A	C	p.E199_splice
UCEC	TCGA-BG-A0M0-01	HNRNPA1	ENST00000340913.6	chr12	54676431:54676449:54676583:54676658:54677595:54677662,54676431:54676449:54676583:54676658:54676862:54677018,	54676584	54676658	54676582	54676582	Splice_Site	A	T	p.G226_splice
UCEC	TCGA-BG-A0M2-01	PAM	ENST00000438793.3,ENST00000509636.1,ENST00000346918.2,ENST00000304400.7,ENST00000379787.4,ENST00000348126.2,ENST00000455264.2	chr5	102202976:102203097:102237059:102237117:102249637:102249725,	102237060	102237117	102237059	102237059	Splice_Site	G	T	p.S71_splice
UCEC	TCGA-BG-A0M4-01	SLC4A9	ENST00000507527.1,ENST00000506545.1,ENST00000432095.2,ENST00000230993.6,ENST00000506757.2	chr5	139743345:139743487:139743638:139743772:139743947:139744210,	139743639	139743772	139743774	139743774	Splice_Site	T	C	p.R487_splice
UCEC	TCGA-BG-A0M4-01	CAMK2G	ENST00000472912.1,ENST00000444854.2,ENST00000441192.1,ENST00000322680.3,ENST00000433289.1	chr10	75583797:75583842:75585036:75585105:75587846:75587879,75583797:75583842:75585036:75585105:75597225:75597269,	75585037	75585105	75585106	75585106	Splice_Site	C	T	p.P323_splice
UCEC	TCGA-BG-A0M4-01	CAMK2G	ENST00000474131.1	chr10	75583797:75583842:75585078:75585105:75597225:75597269,	75585079	75585105	75585106	75585106	Splice_Site	C	T	p.P323_splice
UCEC	TCGA-BG-A0M4-01	RPTOR	ENST00000570891.1,ENST00000306801.3,ENST00000577161.1,ENST00000544334.2	chr17	78599490:78599593:78617527:78617610:78681640:78681799,	78617528	78617610	78617612	78617612	Splice_Site	T	C	p.R116_splice
UCEC	TCGA-BG-A0M4-01	ANKRD30B	ENST00000580206.1,ENST00000358984.4	chr18	14797659:14797688:14797780:14797853:14799099:14799128,	14797781	14797853	14797779	14797779	Splice_Site	A	G	p.P653_splice
UCEC	TCGA-BG-A0M8-01	TARSL2	ENST00000335968.3,ENST00000558533.1,ENST00000539112.1	chr15	102201914:102202019:102211688:102211789:102211873:102211951,	102211689	102211789	102211790	102211790	Splice_Site	C	A	p.I623_splice
UCEC	TCGA-BG-A0MG-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000513685.1,ENST00000296585.5	chr5	52368442:52368525:52368947:52369089:52370214:52370307,	52368948	52369089	52369090	52369090	Splice_Site	G	T	p.P857_splice
UCEC	TCGA-BG-A0MQ-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54119944:54120097:54120810:54120936:54122143:54122213,	54120811	54120936	54120809	54120809	Splice_Site	A	G	p.K1346_splice
UCEC	TCGA-BG-A0MQ-01	WDFY1	ENST00000233055.4	chr2	224744840:224744949:224746658:224746789:224749364:224749466,	224746659	224746789	224746657	224746657	Splice_Site	A	G	p.D355_splice
UCEC	TCGA-BG-A0MQ-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55260036:55260140:55264103:55264224:55265377:55265683,	55264104	55264224	55264102	55264102	Splice_Site	A	G	p.W164_splice
UCEC	TCGA-BG-A0MQ-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114345831:114345869:114348277:114348445:114355205:114355262,	114348278	114348445	114348276	114348276	Splice_Site	A	G	p.G126_splice
UCEC	TCGA-BG-A0MQ-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37711071:37711219:37713696:37713844:37716876:37717005,	37713697	37713844	37713696	37713696	Splice_Site	G	A	p.S203_splice
UCEC	TCGA-BG-A0MT-01	ADAM15	ENST00000271836.6,ENST00000368413.1,ENST00000526491.1,ENST00000462116.1,ENST00000355956.2,ENST00000461564.2,ENST00000498481.2,ENST00000531455.1,ENST00000527418.1,ENST00000356955.2,ENST00000359280.4,ENST00000529473.1,ENST00000368410.2,ENST00000472434.1,ENST00000461234.1,ENST00000449910.2	chr1	155032377:155032450:155032680:155032819:155034720:155034845,155032377:155032450:155032680:155032819:155033238:155033308,	155032681	155032819	155032820	155032820	Splice_Site	G	A	p.R736_splice
UCEC	TCGA-BG-A0MT-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717609	89717609	Splice_Site	G	C	p.N212_splice
UCEC	TCGA-BG-A0MU-01	RHCE	ENST00000349438.4	chr1	25712201:25712335:25715466:25715604:25729086:25729193,25712201:25712335:25715466:25715604:25717239:25717406,25701839:25701919:25715466:25715604:25717239:25717406,	25715467	25715604	25715466	25715466	Splice_Site	C	A	p.P313_splice
UCEC	TCGA-BG-A0MU-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000513685.1,ENST00000296585.5	chr5	52368442:52368525:52368947:52369089:52370214:52370307,	52368948	52369089	52369090	52369090	Splice_Site	G	T	p.P857_splice
UCEC	TCGA-BG-A0MU-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	p.E244_splice
UCEC	TCGA-BG-A0VT-01	PLB1	ENST00000327757.5,ENST00000404858.1,ENST00000422425.2	chr2	28826832:28826914:28827521:28827626:28828719:28828815,	28827522	28827626	28827627	28827627	Splice_Site	G	T	p.A987_splice
UCEC	TCGA-BG-A0VT-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	p.E244_splice
UCEC	TCGA-BG-A0VX-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717609	89717609	Splice_Site	G	A	p.N212_splice
UCEC	TCGA-BG-A0VZ-01	ACPP	ENST00000336375.5,ENST00000351273.7,ENST00000512463.1	chr3	132056299:132056398:132061395:132061488:132063770:132063903,	132061396	132061488	132061395	132061395	Splice_Site	G	T	p.D186_splice
UCEC	TCGA-BG-A0VZ-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000520133.1,ENST00000398972.3	chr10	71649169:71649196:71654307:71654334:71654430:71654457,	71654308	71654334	71654307	71654307	Splice_Site	G	T	p.G193_splice
UCEC	TCGA-BG-A0VZ-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3	chr14	35031865:35032381:35036891:35036977:35037059:35037219,	35036892	35036977	35036979	35036979	Splice_Site	T	C	p.E373_splice
UCEC	TCGA-BG-A0W1-01	M6PR	ENST00000000412.3,ENST00000543834.1	chr12	9096025:9096131:9096396:9096506:9098013:9098075,	9096397	9096506	9096396	9096396	Splice_Site	C	A	p.A151_splice
UCEC	TCGA-BG-A0W1-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	p.E244_splice
UCEC	TCGA-BG-A0W2-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	p.E244_splice
UCEC	TCGA-BG-A187-01	RHCE	ENST00000349438.4	chr1	25712201:25712335:25715466:25715604:25729086:25729193,25712201:25712335:25715466:25715604:25717239:25717406,25701839:25701919:25715466:25715604:25717239:25717406,	25715467	25715604	25715466	25715466	Splice_Site	C	A	p.P313_splice
UCEC	TCGA-BG-A18B-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000350210.2,ENST00000368366.1	chr1	155217864:155218094:155218195:155218264:155220066:155220612,	155218196	155218264	155218265	155218265	Splice_Site	C	A	p.A504_splice
UCEC	TCGA-BG-A18C-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610544	30610544	Splice_Site	G	T	p.F230_splice
UCEC	TCGA-BG-A18C-01	ABCB1	ENST00000543898.1,ENST00000265724.3,ENST00000482527.1	chr7	87175264:87175340:87178663:87178834:87179166:87179370,	87178664	87178834	87178663	87178663	Splice_Site	C	G	p.K575_splice
UCEC	TCGA-BK-A0C9-01	MAP4	ENST00000383737.4,ENST00000383736.3,ENST00000429422.1,ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47913406:47913590:47917174:47917390:47918906:47919013,	47917175	47917390	47917174	47917174	Splice_Site	C	T	p.K774_splice
UCEC	TCGA-BK-A0C9-01	ZCCHC8	ENST00000336229.4,ENST00000543897.1,ENST00000536306.1,ENST00000538116.1,ENST00000542892.1	chr12	122958486:122958822:122962387:122962505:122962752:122962839,	122962388	122962505	122962386	122962386	Splice_Site	A	T	p.D449_splice
UCEC	TCGA-BS-A0TA-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176304894:176305128:176305244:176305394:176305475:176305640,	176305245	176305394	176305244	176305244	Splice_Site	G	A	p.E624_splice
UCEC	TCGA-BS-A0TA-01	SPIN1	ENST00000469017.2,ENST00000541629.1,ENST00000485804.1,ENST00000375859.3	chr9	91063855:91063904:91083286:91083520:91089992:91090118,91077410:91077664:91083286:91083520:91089992:91090118,	91083287	91083520	91083522	91083522	Splice_Site	T	C	p.N197_splice
UCEC	TCGA-BS-A0TA-01	ALG8	ENST00000524925.1,ENST00000532440.1,ENST00000299626.5,ENST00000530454.1,ENST00000525870.1,ENST00000525755.1,ENST00000376156.3,ENST00000529139.1,ENST00000526737.1	chr11	77823811:77823816:77824931:77825035:77825311:77825422,	77824932	77825035	77825036	77825036	Splice_Site	C	A	p.D225_splice
UCEC	TCGA-BS-A0TD-01	PTPN7	ENST00000496197.1,ENST00000308986.5,ENST00000477554.1,ENST00000462815.1,ENST00000544762.1,ENST00000367279.4,ENST00000543735.1,ENST00000480836.1,ENST00000309017.3,ENST00000495688.1	chr1	202117708:202117827:202119438:202119552:202121669:202121827,	202119439	202119552	202119438	202119438	Splice_Site	C	T	p.R330_splice
UCEC	TCGA-BS-A0TD-01	CDC123	ENST00000442050.1	chr10	12252288:12252321:12259359:12259466:12272946:12272977,	12259360	12259466	12259467	12259467	Splice_Site	G	A	p.P147_splice
UCEC	TCGA-BS-A0TE-01	ADCY6	ENST00000357869.3,ENST00000550422.1,ENST00000307885.4	chr12	49168184:49168301:49168473:49168561:49168739:49168837,	49168474	49168561	49168472	49168472	Splice_Site	A	G	p.S722_splice
UCEC	TCGA-BS-A0TI-01	PTBP3	ENST00000343327.2	chr9	115024784:115024879:115030328:115030475:115038123:115038293,115024784:115024879:115030328:115030475:115060111:115060196,	115030329	115030475	115030328	115030328	Splice_Site	C	G	p.A151_splice
UCEC	TCGA-BS-A0TJ-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156531629:156531793:156532378:156532457:156532925:156533104,	156532379	156532457	156532378	156532378	Splice_Site	C	T	p.V293_splice
UCEC	TCGA-BS-A0TJ-01	EAF1	ENST00000396842.2	chr3	15471422:15471514:15473593:15473730:15475854:15476045,	15473594	15473730	15473731	15473731	Splice_Site	G	A	p.R112_splice
UCEC	TCGA-BS-A0TJ-01	STAB1	ENST00000321725.6	chr3	52547898:52547997:52548130:52548229:52548380:52548512,	52548131	52548229	52548230	52548230	Splice_Site	G	A	p.L1182_splice
UCEC	TCGA-BS-A0TJ-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122765538:122765703:122766711:122766891:122767803:122767921,	122766712	122766891	122766710	122766710	Splice_Site	G	A	p.Q772_splice
UCEC	TCGA-BS-A0U7-01	KLHL6	ENST00000468734.1,ENST00000341319.3	chr3	183209155:183210016:183210281:183210495:183211866:183212069,	183210282	183210495	183210280	183210280	Splice_Site	A	G	p.G522_splice
UCEC	TCGA-BS-A0U7-01	ACSF2	ENST00000502667.1,ENST00000504392.1,ENST00000510410.1,ENST00000541920.1,ENST00000427954.2,ENST00000300441.4,ENST00000506085.1	chr17	48551254:48551365:48551559:48551628:48551862:48552031,	48551560	48551628	48551629	48551629	Splice_Site	G	A	p.K624_splice
UCEC	TCGA-BS-A0U8-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72397339:72397501:72398922:72399003:72400477:72400649,	72398923	72399003	72398921	72398921	Splice_Site	A	G	p.R341_splice
UCEC	TCGA-BS-A0U8-01	CASD1	ENST00000417387.1	chr7	94139379:94139529:94146871:94146968:94156473:94156518,	94146872	94146968	94146970	94146970	Splice_Site	T	C	p.S77_splice
UCEC	TCGA-BS-A0U8-01	CDK5RAP3	ENST00000580391.1,ENST00000584991.1,ENST00000584168.1,ENST00000338399.4,ENST00000583697.1,ENST00000585163.1,ENST00000578663.1,ENST00000536708.2,ENST00000580670.2,ENST00000584063.1,ENST00000580287.1	chr17	46056200:46056283:46057958:46058164:46058528:46058700,	46057959	46058164	46058166	46058166	Splice_Site	T	C	p.R448_splice
UCEC	TCGA-BS-A0U8-01	BPIFA1	ENST00000375422.2,ENST00000354297.4,ENST00000375413.4	chr20	31827608:31827716:31828038:31828191:31829190:31829275,	31828039	31828191	31828038	31828038	Splice_Site	G	T	p.T143_splice
UCEC	TCGA-BS-A0UL-01	UACA	ENST00000560523.1,ENST00000379983.2,ENST00000558758.1,ENST00000322954.6,ENST00000560167.1,ENST00000560441.1	chr15	70976695:70976785:70979878:70979985:70980088:70980159,	70979879	70979985	70979878	70979878	Splice_Site	C	A	p.R201_splice
UCEC	TCGA-BS-A0UL-01	CRISPLD2	ENST00000563066.1,ENST00000262424.5,ENST00000567845.1,ENST00000569262.1,ENST00000564567.1	chr16	84900505:84900646:84902456:84902517:84906047:84906114,	84902457	84902517	84902456	84902456	Splice_Site	G	T	p.T285_splice
UCEC	TCGA-BS-A0UL-01	RBFOX2	ENST00000438146.2,ENST00000408983.2	chr22	36177646:36177790:36205826:36206051:36334894:36334945,36177646:36177793:36205826:36206051:36334894:36334945,	36205827	36206051	36205826	36205826	Splice_Site	C	T	p.T154_splice
UCEC	TCGA-BS-A0UM-01	IMPDH2	ENST00000429182.1,ENST00000326739.4	chr3	49061761:49061837:49061927:49062011:49062091:49062235,	49061928	49062011	49061927	49061927	Splice_Site	C	T	p.S508_splice
UCEC	TCGA-BS-A0UM-01	SULT1B1	ENST00000512870.1	chr4	70620387:70620516:70620787:70620919:70626176:70626289,	70620788	70620919	70620787	70620787	Splice_Site	C	A	p.G50_splice
UCEC	TCGA-BS-A0UM-01	HINT1	ENST00000513345.1	chr5	130495296:130495304:130498264:130498369:130500752:130500913,	130498265	130498369	130498370	130498370	Splice_Site	C	T	p.C38_splice
UCEC	TCGA-BS-A0UM-01	TSPAN19	ENST00000532498.2	chr12	85408093:85408334:85409666:85409750:85411234:85411374,	85409667	85409750	85409751	85409751	Splice_Site	C	T	p.G199_splice
UCEC	TCGA-BS-A0UM-01	LRRC36	ENST00000435835.3,ENST00000561821.1,ENST00000563189.1,ENST00000329956.6	chr16	67397492:67397617:67399206:67399258:67400919:67401360,	67399207	67399258	67399260	67399260	Splice_Site	T	C	p.E252_splice
UCEC	TCGA-BS-A0UM-01	FAM120C	ENST00000375180.2	chrX	54107754:54107893:54112147:54112349:54114187:54114397,	54112148	54112349	54112147	54112147	Splice_Site	C	T	p.G947_splice
UCEC	TCGA-BS-A0V6-01	GPATCH8	ENST00000591680.1	chr17	42513874:42513913:42541839:42541912:42552196:42552271,	42541840	42541912	42541838	42541838	Splice_Site	A	C	p.G65_splice
UCEC	TCGA-D1-A0ZO-01	ACAD8	ENST00000534240.1,ENST00000533387.1	chr11	134126981:134127151:134128408:134128518:134128901:134128978,134126503:134126542:134128408:134128518:134128901:134128978,134123510:134123603:134128408:134128518:134128901:134128978,	134128409	134128518	134128407	134128407	Splice_Site	A	G	p.N127_splice
UCEC	TCGA-D1-A0ZO-01	XPOT	ENST00000332707.5	chr12	64829406:64829454:64833023:64833095:64838854:64838911,	64833024	64833095	64833096	64833096	Splice_Site	G	A	p.Q935_splice
UCEC	TCGA-D1-A0ZQ-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62940676:62940852:62943447:62943610:62946660:62946954,	62943448	62943610	62943446	62943446	Splice_Site	A	T	p.G918_splice
UCEC	TCGA-D1-A0ZS-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	207003208:207003338:207006664:207006793:207007409:207007549,	207006665	207006793	207006794	207006794	Splice_Site	C	T	p.G392_splice
UCEC	TCGA-D1-A0ZS-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591246	Splice_Site	A	G	p.M582_splice
UCEC	TCGA-D1-A0ZS-01	YIF1A	ENST00000471387.2,ENST00000526497.1,ENST00000376901.4	chr11	66052393:66052437:66052851:66053007:66053171:66053229,	66052852	66053007	66052851	66052851	Splice_Site	C	T	p.G214_splice
UCEC	TCGA-D1-A0ZU-01	ANO2	ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5848482:5848565:5853322:5853483:5860001:5860136,	5853323	5853483	5853322	5853322	Splice_Site	C	A	p.A447_splice
UCEC	TCGA-D1-A101-01	HADHA	ENST00000380649.3,ENST00000492433.1	chr2	26416445:26416641:26417438:26417507:26417960:26418038,	26417439	26417507	26417509	26417509	Splice_Site	T	C	p.D541_splice
UCEC	TCGA-D1-A101-01	MTRR	ENST00000510525.1,ENST00000502550.1,ENST00000512217.1,ENST00000440940.2,ENST00000264668.2	chr5	7870882:7871036:7873485:7873639:7875370:7875423,	7873486	7873639	7873485	7873485	Splice_Site	G	T	p.Y71_splice
UCEC	TCGA-D1-A101-01	MTRR	ENST00000513439.1,ENST00000508047.1	chr5	7870882:7871036:7873485:7873625:7875370:7875423,	7873486	7873625	7873485	7873485	Splice_Site	G	T	p.Y71_splice
UCEC	TCGA-D1-A101-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113705058	113705058	Splice_Site	C	T	p.S179_splice
UCEC	TCGA-D1-A101-01	M6PR	ENST00000000412.3,ENST00000543834.1	chr12	9096025:9096131:9096396:9096506:9098013:9098075,	9096397	9096506	9096396	9096396	Splice_Site	C	A	p.A151_splice
UCEC	TCGA-D1-A101-01	PSG4	ENST00000244295.9	chr19	43702409:43702427:43708037:43708403:43709624:43709703,	43708038	43708403	43708037	43708037	Splice_Site	C	T	p.L144_splice
UCEC	TCGA-D1-A101-01	TRAPPC6A	ENST00000588062.1,ENST00000585934.1,ENST00000006275.4,ENST00000592647.1	chr19	45666398:45666481:45667173:45667267:45667421:45667505,	45667174	45667267	45667269	45667269	Splice_Site	T	C	p.F119_splice
UCEC	TCGA-D1-A163-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591246	Splice_Site	A	G	p.M582_splice
UCEC	TCGA-D1-A163-01	FBXW2	ENST00000453291.1,ENST00000340778.5,ENST00000608872.1	chr9	123533688:123533795:123535031:123535118:123538370:123538504,	123535032	123535118	123535119	123535119	Splice_Site	C	A	p.V306_splice
UCEC	TCGA-D1-A163-01	CTC1	ENST00000315684.8,ENST00000578537.1	chr17	8132144:8132210:8132459:8132524:8132619:8132723,	8132460	8132524	8132526	8132526	Splice_Site	T	C	p.G1053_splice
UCEC	TCGA-D1-A163-01	DDX5	ENST00000583212.1,ENST00000225792.5,ENST00000583239.1,ENST00000581230.1,ENST00000578804.1,ENST00000585060.1,ENST00000578190.1,ENST00000577922.1,ENST00000584279.1,ENST00000581697.1,ENST00000579091.1,ENST00000581806.1	chr17	62500100:62500234:62500339:62500436:62500794:62500960,	62500340	62500436	62500437	62500437	Splice_Site	C	T	p.Q71_splice
UCEC	TCGA-D1-A168-01	KANSL1	ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1,ENST00000576870.1,ENST00000573682.1,ENST00000572218.1	chr17	44109530:44109665:44110445:44110558:44110768:44110826,	44110446	44110558	44110560	44110560	Splice_Site	T	A	p.I909_splice
UCEC	TCGA-D1-A16B-01	ARG1	ENST00000275196.5,ENST00000356962.2,ENST00000368087.3	chr6	131900252:131900425:131902358:131902518:131903760:131903855,	131902359	131902518	131902519	131902519	Splice_Site	G	T	p.K155_splice
UCEC	TCGA-D1-A16E-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176305244:176305394:176305475:176305640:176306310:176306489,	176305476	176305640	176305474	176305474	Splice_Site	A	G	p.E674_splice
UCEC	TCGA-D1-A16I-01	AGBL3	ENST00000455283.2	chr7	134672639:134672747:134674000:134674061:134678243:134678429,134672639:134672747:134674000:134674061:134701802:134701910,	134674001	134674061	134674062	134674062	Splice_Site	G	T	p.A42_splice
UCEC	TCGA-D1-A16I-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574034	7574034	Splice_Site	C	G	p.I332_splice
UCEC	TCGA-D1-A16N-01	CHCHD7	ENST00000523975.1	chr8	57124368:57124396:57127156:57127226:57128991:57129065,57125320:57125448:57127156:57127226:57128991:57129065,	57127157	57127226	57127228	57127228	Splice_Site	T	C	p.S43_splice
UCEC	TCGA-D1-A16N-01	PCDH15	ENST00000495484.1,ENST00000476074.1	chr10	55570315:55570424:55571308:55571379:55575998:55576037,	55571309	55571379	55571307	55571307	Splice_Site	A	G	p.G1482_splice
UCEC	TCGA-D1-A16O-01	UTP18	ENST00000225298.7	chr17	49346197:49346265:49350722:49350811:49353226:49353352,	49350723	49350811	49350812	49350812	Splice_Site	G	T	p.K237_splice
UCEC	TCGA-D1-A16Q-01	SLC9C2	ENST00000367714.3	chr1	173567044:173567171:173569255:173569356:173570788:173570855,	173569256	173569356	173569254	173569254	Splice_Site	A	G	p.E76_splice
UCEC	TCGA-D1-A16R-01	ITLN1	ENST00000326245.3	chr1	160846328:160846606:160849100:160849204:160850377:160850498,	160849101	160849204	160849100	160849100	Splice_Site	C	T	p.H263_splice
UCEC	TCGA-D1-A16R-01	HMGCLL1	ENST00000308161.4	chr6	55364033:55364097:55378845:55378994:55406526:55406634,	55378846	55378994	55378995	55378995	Splice_Site	C	G	p.V162_splice
UCEC	TCGA-D1-A174-01	HS1BP3	ENST00000402541.1,ENST00000304031.3	chr2	20838195:20838412:20840732:20840940:20845099:20845255,	20840733	20840940	20840941	20840941	Splice_Site	C	T	p.V67_splice
UCEC	TCGA-D1-A174-01	SLC39A10	ENST00000465851.1,ENST00000409086.3,ENST00000541054.1,ENST00000430412.1,ENST00000359634.5	chr2	196573379:196573568:196578156:196578277:196581360:196581729,	196578157	196578277	196578278	196578278	Splice_Site	G	T	p.G566_splice
UCEC	TCGA-D1-A174-01	TMC5	ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19460863:19460953:19471556:19471656:19474601:19474689,	19471557	19471656	19471658	19471658	Splice_Site	T	C	p.R383_splice
UCEC	TCGA-D1-A174-01	UPRT	ENST00000462237.1,ENST00000526850.1,ENST00000530743.1,ENST00000373383.4,ENST00000474175.1,ENST00000373379.1	chrX	74517325:74517388:74519569:74519731:74520701:74520800,	74519570	74519731	74519569	74519569	Splice_Site	G	T	p.G188_splice
UCEC	TCGA-D1-A176-01	NPHS2	ENST00000367616.4	chr1	179521737:179521816:179523610:179523666:179528813:179528896,	179523611	179523666	179523667	179523667	Splice_Site	C	A	p.V247_splice
UCEC	TCGA-D1-A176-01	SMPD4	ENST00000453750.1,ENST00000491319.2,ENST00000439886.1,ENST00000351288.6,ENST00000412570.1,ENST00000452225.2,ENST00000339679.7,ENST00000491128.1,ENST00000454468.1,ENST00000443958.2,ENST00000431183.2,ENST00000482171.1,ENST00000426662.2,ENST00000409031.1,ENST00000433118.1	chr2	130910682:130910744:130910891:130911023:130911274:130911508,	130910892	130911023	130910890	130910890	Splice_Site	A	G	p.Q714_splice
UCEC	TCGA-D1-A176-01	DDX60L	ENST00000505863.1	chr4	169337832:169337948:169341411:169341531:169342910:169343060,	169341412	169341531	169341410	169341410	Splice_Site	A	G	p.Q838_splice
UCEC	TCGA-D1-A176-01	SMURF2	ENST00000582081.1,ENST00000585301.1,ENST00000578386.1,ENST00000262435.9	chr17	62559000:62559084:62567915:62568074:62574609:62574694,	62567916	62568074	62567914	62567914	Splice_Site	A	T	p.N339_splice
UCEC	TCGA-D1-A176-01	SMURF2	ENST00000578386.1,ENST00000262435.9	chr17	62594499:62594608:62602719:62602758:62657946:62658015,	62602720	62602758	62602719	62602719	Splice_Site	C	T	p.R31_splice
UCEC	TCGA-D1-A176-01	RGL3	ENST00000563726.1,ENST00000380456.3,ENST00000566153.1,ENST00000562663.1,ENST00000565895.1,ENST00000453604.2,ENST00000393423.3	chr19	11515887:11515907:11515998:11516102:11517094:11517256,	11515999	11516102	11515998	11515998	Splice_Site	C	A	p.R367_splice
UCEC	TCGA-D1-A176-01	AMOT	ENST00000371959.3,ENST00000524145.1,ENST00000371962.1,ENST00000304758.1,ENST00000371958.1	chrX	112024113:112024346:112025767:112025890:112033819:112034010,	112025768	112025890	112025891	112025891	Splice_Site	C	A	p.R706_splice
UCEC	TCGA-D1-A177-01	WDR27	ENST00000546525.1,ENST00000479310.1	chr6	170036466:170036600:170038634:170038756:170043792:170043882,170034523:170034621:170038634:170038756:170043792:170043882,	170038635	170038756	170038633	170038633	Splice_Site	A	G	p.L623_splice
UCEC	TCGA-D1-A177-01	COPS6	ENST00000426712.1,ENST00000303904.3,ENST00000418625.1	chr7	99688059:99688110:99688214:99688277:99688524:99688572,	99688215	99688277	99688214	99688214	Splice_Site	G	A	p.V142_splice
UCEC	TCGA-D1-A177-01	HCFC2	ENST00000229330.4	chr12	104480624:104480792:104481763:104481816:104487163:104487341,	104481764	104481816	104481818	104481818	Splice_Site	T	C	p.S428_splice
UCEC	TCGA-D1-A17A-01	DSTN	ENST00000474024.1,ENST00000246069.7	chr20	17581501:17581690:17585199:17585276:17587681:17587867,	17585200	17585276	17585278	17585278	Splice_Site	T	C	p.G130_splice
UCEC	TCGA-D1-A17B-01	RHCE	ENST00000349438.4	chr1	25712201:25712335:25715466:25715604:25729086:25729193,25712201:25712335:25715466:25715604:25717239:25717406,25701839:25701919:25715466:25715604:25717239:25717406,	25715467	25715604	25715466	25715466	Splice_Site	C	A	p.P313_splice
UCEC	TCGA-D1-A17B-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156131136:156131309:156132734:156132885:156142616:156142797,	156132735	156132885	156132886	156132886	Splice_Site	G	T	p.S378_splice
UCEC	TCGA-D1-A17B-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225346608:225346795:225360548:225360683:225362469:225362536,	225360549	225360683	225360684	225360684	Splice_Site	C	A	p.E576_splice
UCEC	TCGA-D1-A17B-01	M6PR	ENST00000000412.3,ENST00000543834.1	chr12	9096025:9096131:9096396:9096506:9098013:9098075,	9096397	9096506	9096396	9096396	Splice_Site	C	A	p.A151_splice
UCEC	TCGA-D1-A17B-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	p.E244_splice
UCEC	TCGA-D1-A17D-01	ARPC1A	ENST00000262942.5,ENST00000432786.1,ENST00000432884.2,ENST00000441989.2	chr7	98946515:98946582:98951531:98951744:98955962:98956026,	98951532	98951744	98951746	98951746	Splice_Site	T	C	p.Q238_splice
UCEC	TCGA-D1-A17D-01	PPFIA2	ENST00000550359.2,ENST00000550584.2,ENST00000552948.1,ENST00000333447.7,ENST00000549396.1,ENST00000407050.4,ENST00000548790.1,ENST00000549325.1,ENST00000545296.2,ENST00000548586.1	chr12	81799565:81799682:81833750:81833825:81839334:81839357,	81833751	81833825	81833826	81833826	Splice_Site	C	A	p.V191_splice
UCEC	TCGA-D1-A17D-01	PSME2	ENST00000560788.1	chr14	24614587:24614674:24614918:24615449:24615742:24615787,	24614919	24615449	24615450	24615450	Splice_Site	C	A	p.V17_splice
UCEC	TCGA-D1-A17D-01	PSME2	ENST00000558273.1	chr14	24614918:24614981:24615416:24615449:24615742:24615787,24614918:24615105:24615416:24615449:24615742:24615787,	24615417	24615449	24615450	24615450	Splice_Site	C	A	p.V17_splice
UCEC	TCGA-D1-A17D-01	NPC2	ENST00000556009.1,ENST00000555619.1	chr14	74946959:74946991:74947404:74947482:74951117:74951290,	74947405	74947482	74947404	74947404	Splice_Site	C	T	p.I147_splice
UCEC	TCGA-D1-A17D-01	THBS1	ENST00000260356.5	chr15	39885597:39885869:39886299:39886397:39886501:39886641,	39886300	39886397	39886399	39886399	Splice_Site	T	C	p.R1122_splice
UCEC	TCGA-D1-A17D-01	MAPK6	ENST00000261845.5	chr15	52350829:52350994:52353495:52353697:52356098:52358462,	52353496	52353697	52353495	52353495	Splice_Site	G	A	p.A289_splice
UCEC	TCGA-D1-A17D-01	IREB2	ENST00000258886.8,ENST00000560840.1,ENST00000558570.1,ENST00000560440.1	chr15	78732136:78732223:78755263:78755429:78757592:78757606,	78755264	78755429	78755430	78755430	Splice_Site	G	A	p.T91_splice
UCEC	TCGA-D1-A17D-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	p.E244_splice
UCEC	TCGA-D1-A17H-01	MTMR11	ENST00000482025.1,ENST00000492824.1	chr1	149905298:149905423:149905502:149905835:149906083:149906219,	149905503	149905835	149905836	149905836	Splice_Site	C	T	p.S228_splice
UCEC	TCGA-D1-A17H-01	MTMR11	ENST00000369140.3,ENST00000406732.3,ENST00000439741.2	chr1	149905502:149905591:149905747:149905835:149906083:149906219,	149905748	149905835	149905836	149905836	Splice_Site	C	T	p.S228_splice
UCEC	TCGA-D1-A17H-01	CCDC138	ENST00000295124.4,ENST00000412964.2	chr2	109404487:109404545:109405307:109405422:109408130:109408258,	109405308	109405422	109405307	109405307	Splice_Site	G	T	p.G51_splice
UCEC	TCGA-D1-A17H-01	PDLIM7	ENST00000493815.1,ENST00000355841.2,ENST00000359895.2	chr5	176916393:176916628:176917870:176917907:176918010:176918147,176916771:176916833:176917870:176917907:176918010:176918147,	176917871	176917907	176917869	176917869	Splice_Site	A	G	p.S191_splice
UCEC	TCGA-D1-A17H-01	C6orf62	ENST00000378119.4,ENST00000540769.1,ENST00000378102.3	chr6	24709004:24709139:24714545:24714668:24716375:24716549,	24714546	24714668	24714545	24714545	Splice_Site	C	T	p.Q143_splice
UCEC	TCGA-D1-A17H-01	NAA25	ENST00000551858.1,ENST00000547133.1,ENST00000552527.1,ENST00000261745.4	chr12	112516485:112516545:112518863:112518938:112528529:112528668,112516485:112516545:112518863:112518938:112525486:112525605,	112518864	112518938	112518862	112518862	Splice_Site	A	T	p.Q159_splice
UCEC	TCGA-D1-A17H-01	ZNF446	ENST00000594369.1,ENST00000596341.1	chr19	58989463:58989548:58991009:58991094:58991296:58991386,	58991010	58991094	58991009	58991009	Splice_Site	G	T	p.E210_splice
UCEC	TCGA-D1-A17H-01	ZMYND8	ENST00000458360.2	chr20	45858471:45858552:45865069:45865260:45867639:45867882,45858471:45858552:45865069:45865260:45874751:45875261,	45865070	45865260	45865068	45865068	Splice_Site	A	G	p.K959_splice
UCEC	TCGA-D1-A17M-01	TDRKH	ENST00000440583.2,ENST00000458431.2,ENST00000526413.1,ENST00000525790.1,ENST00000368827.6,ENST00000368822.1,ENST00000368823.1,ENST00000368824.3,ENST00000368825.3	chr1	151746888:151746980:151747185:151747282:151747540:151747642,	151747186	151747282	151747185	151747185	Splice_Site	C	T	p.E545_splice
UCEC	TCGA-D1-A17R-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1,ENST00000441679.1	chr2	222322673:222322710:222347071:222347410:222365736:222365892,	222347072	222347410	222347411	222347411	Splice_Site	C	A	p.R327_splice
UCEC	TCGA-D1-A17R-01	SLC17A1	ENST00000476801.1,ENST00000244527.4	chr6	25813058:25813220:25813322:25813441:25819295:25819382,	25813323	25813441	25813442	25813442	Splice_Site	C	A	p.G206_splice
UCEC	TCGA-D1-A17R-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000463648.1	chr7	97870162:97870263:97870381:97870556:97872778:97872886,	97870382	97870556	97870558	97870558	Splice_Site	T	C	p.V220_splice
UCEC	TCGA-D1-A17R-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690802	89690802	Splice_Site	G	A	p.L70_splice
UCEC	TCGA-D1-A17R-01	ZNF516	ENST00000524431.2,ENST00000443185.2	chr18	74074283:74074512:74082482:74082550:74083421:74083526,	74082483	74082550	74082481	74082481	Splice_Site	A	T	p.Q1144_splice
UCEC	TCGA-D1-A17R-01	RAD23A	ENST00000586375.1	chr19	13059502:13059627:13060088:13060222:13063502:13063634,	13060089	13060222	13060223	13060223	Splice_Site	G	C	p.Q271_splice
UCEC	TCGA-D1-A17U-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712017	89712017	Splice_Site	G	T	p.N212_splice
UCEC	TCGA-D1-A17U-01	ACTR6	ENST00000553038.1,ENST00000552064.1	chr12	100603943:100603986:100604072:100604129:100606033:100606132,100601440:100601564:100604072:100604129:100606033:100606132,	100604073	100604129	100604072	100604072	Splice_Site	G	A	p.R172_splice
UCEC	TCGA-D1-A17U-01	MYO5B	ENST00000285039.7	chr18	47479629:47479713:47480682:47480805:47488635:47488776,	47480683	47480805	47480807	47480807	Splice_Site	T	C	p.V516_splice
UCEC	TCGA-DI-A0WH-01	TMEM50A	ENST00000374358.4,ENST00000468704.1	chr1	25669451:25669564:25678116:25678184:25683283:25683344,25669451:25669564:25678116:25678184:25679372:25679465,	25678117	25678184	25678185	25678185	Splice_Site	G	A	p.G92_splice
UCEC	TCGA-DI-A0WH-01	NOP58	ENST00000433543.2	chr2	203155847:203155993:203157499:203157626:203160396:203160560,203155847:203155993:203157499:203157626:203162101:203162236,	203157500	203157626	203157628	203157628	Splice_Site	T	C	p.G303_splice
UCEC	TCGA-DI-A0WH-01	SNRPC	ENST00000374018.1,ENST00000374017.3,ENST00000244520.5	chr6	34735684:34735774:34738067:34738172:34741222:34741309,	34738068	34738172	34738067	34738067	Splice_Site	G	A	p.P84_splice
UCEC	TCGA-DI-A0WH-01	CCDC146	ENST00000285871.4,ENST00000431197.1,ENST00000415750.1	chr7	76796974:76797141:76866263:76866346:76871007:76871217,	76866264	76866346	76866348	76866348	Splice_Site	T	C	p.S80_splice
UCEC	TCGA-DI-A0WH-01	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000373382.1,ENST00000263559.6	chr10	70925797:70925866:70928244:70928387:70930911:70931016,	70928245	70928387	70928389	70928389	Splice_Site	T	C	p.Q290_splice
UCEC	TCGA-DI-A0WH-01	ACSM3	ENST00000562251.1,ENST00000289416.5,ENST00000567387.1,ENST00000450120.2	chr16	20797399:20797480:20801908:20802010:20803323:20803451,	20801909	20802010	20801907	20801907	Splice_Site	A	G	p.I438_splice
UCEC	TCGA-DI-A0WH-01	PSMD7	ENST00000568717.1,ENST00000540379.1,ENST00000219313.4	chr16	74336109:74336190:74338200:74338292:74339186:74339504,	74338201	74338292	74338294	74338294	Splice_Site	T	C	p.R177_splice
UCEC	TCGA-DI-A0WH-01	NUP85	ENST00000583548.1	chr17	73201814:73201889:73204631:73204715:73205917:73206080,	73204632	73204715	73204717	73204717	Splice_Site	T	C	p.E43_splice
UCEC	TCGA-DI-A0WH-01	NUP85	ENST00000581104.1,ENST00000583948.1,ENST00000577208.1,ENST00000447371.2,ENST00000245544.4,ENST00000579298.1	chr17	73201814:73201889:73204621:73204715:73205917:73206080,	73204622	73204715	73204717	73204717	Splice_Site	T	C	p.E43_splice
UCEC	TCGA-DI-A0WH-01	NCAN	ENST00000585410.1,ENST00000538881.1,ENST00000252575.6	chr19	19351411:19351494:19356121:19356266:19360574:19360738,19351411:19351494:19356121:19356266:19359508:19359691,	19356122	19356266	19356268	19356268	Splice_Site	T	C	p.V1213_splice
UCEC	TCGA-EO-A1Y8-01	ZNF775	ENST00000329630.5	chr7	150076423:150076481:150085509:150085589:150093600:150094003,	150085510	150085589	150085591	150085591	Splice_Site	T	G	p.G11_splice
UCEC	TCGA-A5-A0G9-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145537422:145537564:145537736:145537829:145537988:145538065,	145537737	145537829	145537735	145537736	Splice_Site	AG	-	p.R859_splice
UCEC	TCGA-A5-A0GA-01	SLC6A1	ENST00000287766.4,ENST00000536032.1	chr3	11070906:11071038:11072862:11072965:11075324:11075425,	11072863	11072965	11072861	11072862	Splice_Site	-	G	p.G442_splice
UCEC	TCGA-A5-A0GA-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157406041	157406042	Splice_Site	-	TA	p.G748_splice
UCEC	TCGA-A5-A0GA-01	CASD1	ENST00000297273.4	chr7	94162990:94163114:94164620:94164835:94166783:94167206,	94164621	94164835	94164835	94164836	Splice_Site	TG	-	p.T281_splice
UCEC	TCGA-A5-A0GA-01	EIF2AK4	ENST00000263791.5,ENST00000558629.1,ENST00000560855.1,ENST00000382727.2,ENST00000558557.1	chr15	40322593:40322657:40324369:40324438:40324957:40325002,	40324370	40324438	40324439	40324440	Splice_Site	-	T	p.A1576_splice
UCEC	TCGA-A5-A0RA-01	SFTPC	ENST00000521315.1,ENST00000523296.1	chr8	22020592:22020715:22020948:22021059:22021395:22021425,22020592:22020715:22020948:22021059:22021413:22021425,	22020949	22021059	22021060	22021061	Splice_Site	GT	-	p.Q194_splice
UCEC	TCGA-A5-A0RA-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685315	89685318	Splice_Site	GTAA	-	p.L70_splice
UCEC	TCGA-AP-A05D-01	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3	chr10	124354883:124355142:124356540:124356570:124357489:124357528,	124356541	124356570	124356572	124356573	Splice_Site	-	GA	p.D973_splice
UCEC	TCGA-AP-A05J-01	NR5A1	ENST00000373587.3,ENST00000373588.4	chr9	127245006:127245284:127253359:127253507:127255308:127255428,	127253360	127253507	127253509	127253510	Splice_Site	-	G	p.V331_splice
UCEC	TCGA-AP-A0LE-01	TCF25	ENST00000263346.8,ENST00000568412.1,ENST00000561958.1,ENST00000565196.1	chr16	89940075:89940267:89949758:89949920:89950989:89951021,	89949759	89949920	89949922	89949923	Splice_Site	-	G	p.Q118_splice
UCEC	TCGA-AP-A0LG-01	ZNF510	ENST00000375231.1,ENST00000223428.4,ENST00000374641.3	chr9	99525787:99525914:99537069:99537128:99538281:99538527,	99537070	99537128	99537130	99537131	Splice_Site	-	G	p.G24_splice
UCEC	TCGA-AP-A0LG-01	EIF2AK4	ENST00000263791.5	chr15	40268614:40269045:40270278:40270348:40278005:40278089,	40270279	40270348	40270349	40270350	Splice_Site	-	TA	p.Q773_splice
UCEC	TCGA-AP-A0LH-01	DISP1	ENST00000284476.6	chr1	223165354:223165452:223168226:223168324:223175726:223179337,	223168227	223168324	223168225	223168226	Splice_Site	-	G	p.S297_splice
UCEC	TCGA-AP-A0LH-01	CCT5	ENST00000515676.1,ENST00000506600.1,ENST00000280326.4,ENST00000515390.1,ENST00000423695.2,ENST00000503026.1	chr5	10258497:10258647:10260903:10261023:10261671:10261807,	10260904	10261023	10260901	10260902	Splice_Site	-	A	p.I292_splice
UCEC	TCGA-AP-A0LH-01	ACER3	ENST00000534206.1,ENST00000538157.1,ENST00000526597.1,ENST00000531352.1,ENST00000531461.1,ENST00000530334.1,ENST00000278544.5,ENST00000533873.1,ENST00000532485.1,ENST00000527508.1	chr11	76696686:76696768:76701582:76701618:76709806:76709865,	76701583	76701618	76701581	76701582	Splice_Site	-	G	p.V135_splice
UCEC	TCGA-AP-A0LH-01	URI1	ENST00000542441.2,ENST00000392271.1	chr19	30433424:30433571:30462099:30462134:30471065:30471157,30433460:30433571:30462099:30462134:30476129:30476208,	30462100	30462134	30462098	30462099	Splice_Site	-	G	p.V40_splice
UCEC	TCGA-AP-A0LI-01	LRRC37B	ENST00000583758.1,ENST00000327564.7,ENST00000341671.7,ENST00000582815.1,ENST00000543378.2,ENST00000394713.3,ENST00000584368.1	chr17	30361928:30362000:30362583:30362658:30372718:30372837,	30362584	30362658	30362658	30362659	Splice_Site	TG	-	p.L708_splice
UCEC	TCGA-AP-A0LJ-01	FOXP3	ENST00000376199.2,ENST00000557224.1,ENST00000376197.1,ENST00000518685.1	chrX	49113381:49113469:49113883:49114022:49114752:49114901,	49113884	49114022	49114024	49114025	Splice_Site	-	G	p.L106_splice
UCEC	TCGA-AX-A05S-01	RAMP2	ENST00000589683.1,ENST00000588928.1,ENST00000253796.5	chr17	40913851:40913917:40914372:40914481:40914614:40914716,	40914373	40914481	40914372	40914372	Splice_Site	G	-	p.G55_splice
UCEC	TCGA-AX-A05S-01	ITCH	ENST00000374864.4,ENST00000535650.1	chr20	33000320:33000445:33001547:33001685:33012285:33012331,	33001548	33001685	33001684	33001687	Splice_Site	AAGT	-	p.N159_splice
UCEC	TCGA-AX-A05U-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685314	89685315	Splice_Site	TG	-	p.L70_splice
UCEC	TCGA-AX-A05W-01	DTX2	ENST00000413936.2,ENST00000446600.1,ENST00000324432.5,ENST00000430490.2	chr7	76121469:76121570:76126653:76126794:76129757:76129837,	76126654	76126794	76126796	76126796	Splice_Site	T	-	p.G293_splice
UCEC	TCGA-AX-A060-01	NANS	ENST00000210444.5	chr9	100823063:100823279:100839199:100839299:100840474:100840586,	100839200	100839299	100839300	100839303	Splice_Site	GTAA	-	p.G150_splice
UCEC	TCGA-AX-A06H-01	RBM19	ENST00000392561.3,ENST00000552386.1,ENST00000545145.2,ENST00000261741.5	chr12	114356196:114356252:114358415:114358495:114362501:114362562,	114358416	114358495	114358497	114358498	Splice_Site	-	GA	p.G769_splice
UCEC	TCGA-B5-A0JN-01	DDX11	ENST00000536265.1,ENST00000407793.2,ENST00000535158.1,ENST00000350437.4,ENST00000542838.1,ENST00000415475.2,ENST00000542129.1,ENST00000542244.1,ENST00000540935.1,ENST00000228264.6,ENST00000438391.2,ENST00000539049.1,ENST00000545668.1	chr12	31237943:31238060:31240871:31240917:31241977:31242045,	31240872	31240917	31240918	31240919	Splice_Site	-	T	p.K228_splice
UCEC	TCGA-B5-A0JR-01	DENND5A	ENST00000328194.3,ENST00000530044.1,ENST00000526707.1	chr11	9202313:9202631:9215040:9215228:9225206:9225864,	9215041	9215228	9215038	9215039	Splice_Site	CA	-	p.E379_splice
UCEC	TCGA-B5-A0JR-01	GGT7	ENST00000336431.5	chr20	33447245:33447442:33447771:33447845:33448056:33448124,	33447772	33447845	33447847	33447848	Splice_Site	-	G	p.R248_splice
UCEC	TCGA-B5-A0JZ-01	MRPL3	ENST00000511168.1,ENST00000506946.1,ENST00000264995.3,ENST00000507669.1,ENST00000425847.2	chr3	131208824:131208924:131217022:131217121:131219273:131219328,	131217023	131217121	131217123	131217124	Splice_Site	-	A	p.V151_splice
UCEC	TCGA-B5-A0K2-01	PSME4	ENST00000404125.1,ENST00000389993.3	chr2	54164527:54164677:54167092:54167137:54175557:54175674,	54167093	54167137	54167139	54167140	Splice_Site	-	G	p.N167_splice
UCEC	TCGA-B5-A0K2-01	ARHGAP26	ENST00000378004.3	chr5	142526795:142526946:142586762:142586873:142593561:142593653,	142586763	142586873	142586762	142586763	Splice_Site	-	C	p.L663_splice
UCEC	TCGA-B5-A0K2-01	ARHGAP26	ENST00000274498.4	chr5	142526795:142526946:142586762:142587038:142593561:142593653,	142586763	142587038	142586762	142586763	Splice_Site	-	C	p.L663_splice
UCEC	TCGA-B5-A0K2-01	CWC15	ENST00000279839.6,ENST00000545018.1	chr11	94703152:94703260:94704140:94704229:94704538:94704651,	94704141	94704229	94704231	94704232	Splice_Site	-	G	p.E82_splice
UCEC	TCGA-B5-A0K2-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629613	118629614	Splice_Site	-	G	p.N289_splice
UCEC	TCGA-B5-A0K6-01	KDM3B	ENST00000314358.5	chr5	137717204:137717279:137721710:137722310:137726701:137727950,	137721711	137722310	137721709	137721710	Splice_Site	-	G	p.G261_splice
UCEC	TCGA-B5-A0K7-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629613	118629614	Splice_Site	-	G	p.N289_splice
UCEC	TCGA-B5-A0K9-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645824	54645825	Splice_Site	-	CT	p.E108_splice
UCEC	TCGA-B5-A11F-01	ADAM9	ENST00000487273.2	chr8	38940486:38940592:38947565:38947707:38948777:38948865,	38947566	38947707	38947708	38947709	Splice_Site	-	TTGA	p.E737_splice
UCEC	TCGA-B5-A11F-01	STX17	ENST00000525640.1,ENST00000534052.1,ENST00000525847.1,ENST00000259400.6	chr9	102722198:102722314:102722386:102722437:102729934:102730021,	102722387	102722437	102722438	102722439	Splice_Site	-	T	p.N194_splice
UCEC	TCGA-B5-A11I-01	ADAM9	ENST00000487273.2	chr8	38940486:38940592:38947565:38947707:38948777:38948865,	38947566	38947707	38947708	38947709	Splice_Site	-	TTGA	p.E737_splice
UCEC	TCGA-B5-A11M-01	LCORL	ENST00000512376.2,ENST00000382224.1,ENST00000326877.4,ENST00000382226.5	chr4	17963525:17963655:17964592:17964672:17974442:17974508,	17964593	17964672	17964590	17964591	Splice_Site	-	A	p.S100_splice
UCEC	TCGA-B5-A11V-01	ADAM9	ENST00000487273.2	chr8	38940486:38940592:38947565:38947707:38948777:38948865,	38947566	38947707	38947708	38947709	Splice_Site	-	TTGA	p.E737_splice
UCEC	TCGA-BG-A0M0-01	PSME4	ENST00000404125.1,ENST00000389993.3	chr2	54164527:54164677:54167092:54167137:54175557:54175674,	54167093	54167137	54167139	54167140	Splice_Site	-	G	p.N167_splice
UCEC	TCGA-BG-A0M0-01	CWC15	ENST00000279839.6,ENST00000545018.1	chr11	94703152:94703260:94704140:94704229:94704538:94704651,	94704141	94704229	94704231	94704232	Splice_Site	-	G	p.E82_splice
UCEC	TCGA-BG-A0M3-01	ANKRD28	ENST00000399451.2,ENST00000451422.1,ENST00000498524.1,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15755033:15755148:15756084:15756163:15762421:15762629,	15756085	15756163	15756165	15756166	Splice_Site	-	G	p.S303_splice
UCEC	TCGA-BG-A0M3-01	ARHGAP26	ENST00000378004.3	chr5	142526795:142526946:142586762:142586873:142593561:142593653,	142586763	142586873	142586762	142586763	Splice_Site	-	C	p.L663_splice
UCEC	TCGA-BG-A0M3-01	ARHGAP26	ENST00000274498.4	chr5	142526795:142526946:142586762:142587038:142593561:142593653,	142586763	142587038	142586762	142586763	Splice_Site	-	C	p.L663_splice
UCEC	TCGA-BG-A0M3-01	AMPD3	ENST00000529834.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000444303.2	chr11	10516445:10516577:10517116:10517280:10518358:10518485,	10517117	10517280	10517281	10517282	Splice_Site	-	T	p.Y486_splice
UCEC	TCGA-BG-A0M3-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000301764.7	chr11	61093082:61093180:61094250:61094365:61099014:61099163,61093082:61093180:61094250:61094365:61096834:61097056,	61094251	61094365	61094367	61094368	Splice_Site	-	G	p.D184_splice
UCEC	TCGA-BG-A0M3-01	CWC15	ENST00000279839.6,ENST00000545018.1	chr11	94703152:94703260:94704140:94704229:94704538:94704651,	94704141	94704229	94704231	94704232	Splice_Site	-	G	p.E82_splice
UCEC	TCGA-BG-A0M3-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629613	118629614	Splice_Site	-	G	p.N289_splice
UCEC	TCGA-BG-A0M3-01	APPL2	ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3,ENST00000547790.1,ENST00000553109.1	chr12	105569812:105569860:105570653:105570794:105571003:105571040,	105570654	105570794	105570796	105570797	Splice_Site	-	G	p.F564_splice
UCEC	TCGA-BG-A0M4-01	JUP	ENST00000393930.1,ENST00000393931.3,ENST00000310706.5	chr17	39921174:39921319:39923630:39923832:39925220:39925375,	39923631	39923832	39923834	39923835	Splice_Site	-	G	p.S236_splice
UCEC	TCGA-BG-A0M7-01	ARHGAP26	ENST00000378004.3	chr5	142526795:142526946:142586762:142586873:142593561:142593653,	142586763	142586873	142586762	142586763	Splice_Site	-	C	p.L663_splice
UCEC	TCGA-BG-A0M7-01	ARHGAP26	ENST00000274498.4	chr5	142526795:142526946:142586762:142587038:142593561:142593653,	142586763	142587038	142586762	142586763	Splice_Site	-	C	p.L663_splice
UCEC	TCGA-BG-A0M8-01	STRBP	ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2	chr9	125895123:125895247:125898319:125898460:125898659:125898782,	125898320	125898460	125898446	125898461	Splice_Site	TCCATCTACTTCTACC	-	p.V545_splice
UCEC	TCGA-BG-A0M8-01	XPOT	ENST00000332707.5,ENST00000400935.2	chr12	64810477:64810534:64811825:64811895:64812655:64812874,	64811826	64811895	64811794	64811824	Splice_Site	CCATTATTCTTTTTCTTCTCTATTTTGAACA	-	p.K67_splice
UCEC	TCGA-BG-A0M9-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93697982:93698150:93701804:93701947:93704866:93705030,	93701805	93701947	93701802	93701803	Splice_Site	-	T	p.V821_splice
UCEC	TCGA-BG-A0M9-01	PSME4	ENST00000404125.1,ENST00000389993.3	chr2	54164527:54164677:54167092:54167137:54175557:54175674,	54167093	54167137	54167139	54167140	Splice_Site	-	G	p.N167_splice
UCEC	TCGA-BG-A0M9-01	ANKRD28	ENST00000399451.2,ENST00000451422.1,ENST00000498524.1,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15755033:15755148:15756084:15756163:15762421:15762629,	15756085	15756163	15756165	15756166	Splice_Site	-	G	p.S303_splice
UCEC	TCGA-BG-A0M9-01	ARHGAP26	ENST00000378004.3	chr5	142526795:142526946:142586762:142586873:142593561:142593653,	142586763	142586873	142586762	142586763	Splice_Site	-	C	p.L663_splice
UCEC	TCGA-BG-A0M9-01	ARHGAP26	ENST00000274498.4	chr5	142526795:142526946:142586762:142587038:142593561:142593653,	142586763	142587038	142586762	142586763	Splice_Site	-	C	p.L663_splice
UCEC	TCGA-BG-A0M9-01	CWC15	ENST00000279839.6,ENST00000545018.1	chr11	94703152:94703260:94704140:94704229:94704538:94704651,	94704141	94704229	94704231	94704232	Splice_Site	-	G	p.E82_splice
UCEC	TCGA-BG-A0M9-01	SKAP1	ENST00000584924.1,ENST00000581400.2,ENST00000336915.6	chr17	46239830:46239928:46247970:46248021:46257415:46257610,46239830:46239931:46247970:46248021:46257415:46257610,	46247971	46248021	46248023	46248024	Splice_Site	-	G	p.D276_splice
UCEC	TCGA-BG-A0MQ-01	ANKRD28	ENST00000399451.2,ENST00000451422.1,ENST00000498524.1,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15755033:15755148:15756084:15756163:15762421:15762629,	15756085	15756163	15756165	15756166	Splice_Site	-	G	p.S303_splice
UCEC	TCGA-BG-A0VZ-01	CDC16	ENST00000356221.3,ENST00000252458.6,ENST00000375308.1,ENST00000360383.3,ENST00000375310.1,ENST00000484907.1,ENST00000252457.5,ENST00000375312.3	chr13	115024809:115024873:115027361:115027423:115028353:115028454,	115027362	115027423	115027421	115027424	Splice_Site	TAAG	-	p.K459_splice
UCEC	TCGA-BK-A0CB-01	WASF3	ENST00000335327.5	chr13	27246008:27246126:27250685:27250861:27255190:27255457,	27250686	27250861	27250862	27250863	Splice_Site	GT	-	p.R239_splice
UCEC	TCGA-BK-A0CC-01	SLC6A1	ENST00000287766.4,ENST00000536032.1	chr3	11070906:11071038:11072862:11072965:11075324:11075425,	11072863	11072965	11072861	11072862	Splice_Site	-	G	p.G442_splice
UCEC	TCGA-BS-A0TJ-01	LYPLA1	ENST00000343231.6,ENST00000316963.3,ENST00000518546.1,ENST00000521352.1	chr8	54965214:54965316:54967619:54967693:55013467:55013499,54965214:54965316:54967619:54967693:54975887:54975935,54965214:54965316:54967619:54967693:54974813:54974858,	54967620	54967693	54967695	54967696	Splice_Site	-	A	p.I96_splice
UCEC	TCGA-BS-A0U8-01	MCTP1	ENST00000515393.1,ENST00000514040.1,ENST00000508509.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8	chr5	94046522:94046632:94050481:94050591:94114814:94114868,	94050482	94050591	94050481	94050483	Splice_Site	CTT	-	p.N907_splice
UCEC	TCGA-BS-A0UM-01	SECISBP2L	ENST00000380927.2,ENST00000261847.3,ENST00000559471.1,ENST00000559424.1	chr15	49319561:49319677:49320340:49320365:49320649:49320684,	49320341	49320365	49320367	49320368	Splice_Site	-	A	p.H299_splice
UCEC	TCGA-BS-A0UM-01	GGT7	ENST00000336431.5	chr20	33447245:33447442:33447771:33447845:33448056:33448124,	33447772	33447845	33447847	33447848	Splice_Site	-	G	p.R248_splice
UCEC	TCGA-D1-A0ZO-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32818981:32819127:32820100:32820211:32822817:32823035,	32820101	32820211	32820100	32820101	Splice_Site	-	A	p.E4501_splice
UCEC	TCGA-D1-A0ZS-01	STARD3NL	ENST00000471550.1,ENST00000396013.1,ENST00000544203.1,ENST00000434197.1,ENST00000009041.7	chr7	38256788:38256906:38259165:38259261:38268399:38268472,	38259166	38259261	38259263	38259264	Splice_Site	-	A	p.G217_splice
UCEC	TCGA-D1-A101-01	POLR2B	ENST00000441246.2,ENST00000478188.1,ENST00000381227.1,ENST00000314595.5,ENST00000431623.2	chr4	57877154:57877266:57881667:57881822:57883208:57883407,	57881668	57881822	57881824	57881825	Splice_Site	-	A	p.S652_splice
UCEC	TCGA-D1-A101-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000305126.8,ENST00000442011.2	chr5	135369451:135369550:135379746:135379811:135382023:135382129,	135379747	135379811	135379745	135379746	Splice_Site	AG	-	p.T78_splice
UCEC	TCGA-D1-A102-01	SLC37A3	ENST00000326232.9,ENST00000447932.2,ENST00000473060.1,ENST00000460560.1	chr7	140035176:140035239:140037083:140037149:140043211:140043330,140035271:140035304:140037083:140037149:140043211:140043289,	140037084	140037149	140037149	140037150	Splice_Site	-	G	p.Y443_splice
UCEC	TCGA-D1-A102-01	SLC37A3	ENST00000326232.9,ENST00000447932.2,ENST00000473060.1,ENST00000460560.1	chr7	140035176:140035239:140037083:140037149:140043211:140043330,140035271:140035304:140037083:140037149:140043211:140043289,	140037084	140037149	140037151	140037152	Splice_Site	TG	-	p.Y443_splice
UCEC	TCGA-D1-A102-01	ADAM9	ENST00000487273.2	chr8	38940486:38940592:38947565:38947707:38948777:38948865,	38947566	38947707	38947708	38947709	Splice_Site	-	TTGA	p.E737_splice
UCEC	TCGA-D1-A102-01	STX17	ENST00000525640.1,ENST00000534052.1,ENST00000525847.1,ENST00000259400.6	chr9	102722198:102722314:102722386:102722437:102729934:102730021,	102722387	102722437	102722438	102722439	Splice_Site	-	T	p.N194_splice
UCEC	TCGA-D1-A15Z-01	PGAP3	ENST00000579146.1	chr17	37832866:37833008:37840849:37841002:37842174:37842272,37830869:37830932:37840849:37841002:37844086:37844254,37830869:37830932:37840849:37841002:37842174:37842272,37829028:37829119:37840849:37841002:37842174:37842272,	37840850	37841002	37841004	37841004	Splice_Site	T	-	p.W94_splice
UCEC	TCGA-D1-A169-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591310	67591318	Splice_Site	CTGAAGAGT	-	p.D605_splice
UCEC	TCGA-D1-A16J-01	RBM28	ENST00000223073.2,ENST00000415472.2	chr7	127964660:127964747:127965870:127965944:127970871:127970981,	127965871	127965944	127965868	127965869	Splice_Site	-	A	p.E401_splice
UCEC	TCGA-D1-A176-01	SCYL1	ENST00000528545.1,ENST00000525364.1	chr11	65304061:65304221:65304456:65304599:65305282:65305351,	65304457	65304599	65304600	65304601	Splice_Site	GT	-	p.E653_splice
UCEC	TCGA-D1-A17H-01	FUBP3	ENST00000319725.9	chr9	133501750:133501892:133506014:133506175:133506943:133507017,	133506015	133506175	133506014	133506014	Splice_Site	G	-	p.G373_splice
UCEC	TCGA-D1-A17M-01	PIK3R1	ENST00000521381.1,ENST00000520675.1,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1	chr5	67569217:67569310:67569766:67569841:67575429:67575561,	67569767	67569841	67569842	67569845	Splice_Site	GTGA	-	p.D168_splice
UCEC	TCGA-D1-A17M-01	PHTF2	ENST00000422959.2,ENST00000248550.7,ENST00000416283.2,ENST00000450574.1	chr7	77522924:77522981:77523298:77523310:77530027:77530097,	77523299	77523310	77523311	77523314	Splice_Site	GTAA	-	p.L72_splice
UCEC	TCGA-D1-A17S-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878552	190878552	Splice_Site	G	-	p.G145_splice
UCEC	TCGA-D1-A17U-01	FAM13A	ENST00000264344.5,ENST00000515600.1,ENST00000509094.1	chr4	89859238:89859392:89941610:89941820:89950610:89950800,89912123:89912301:89941610:89941820:89950610:89950800,	89941611	89941820	89941610	89941610	Splice_Site	C	-	p.D143_splice
UCEC	TCGA-AX-A0J0-01	ATAD3B	ENST00000308647.7,ENST00000472194.2	chr1	1417517:1417683:1417924:1417994:1420395:1420551,	1417925	1417994	1417923	1417923	Splice_Site	A	G	e7-2
UCEC	TCGA-AP-A051-01	DFFB	ENST00000468793.1,ENST00000378209.3,ENST00000477548.1,ENST00000378206.1,ENST00000339350.3,ENST00000475969.1	chr1	3786168:3786339:3789035:3789136:3800070:3800364,	3789036	3789136	3789035	3789035	Splice_Site	G	T	e6-1
UCEC	TCGA-AP-A059-01	FHAD1	ENST00000375998.4,ENST00000375999.3,ENST00000358897.4,ENST00000375996.2,ENST00000375997.4,ENST00000417793.1,ENST00000401090.2	chr1	15639552:15639683:15642873:15642963:15644319:15644424,	15642874	15642963	15642873	15642873	Splice_Site	G	T	e8-1
UCEC	TCGA-B5-A11E-01	KIF17	ENST00000490034.1,ENST00000375044.1,ENST00000247986.2,ENST00000400463.3,ENST00000477167.1	chr1	20990508:20991255:20992706:20992824:20996913:20996981,	20992707	20992824	20992706	20992706	Splice_Site	C	G	e14+1
UCEC	TCGA-B5-A0JY-01	CDC42	ENST00000498236.1,ENST00000421089.2	chr1	22404969:22405076:22405198:22405374:22408214:22408287,	22405199	22405374	22405198	22405198	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A059-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088642	27088642	Splice_Site	G	T	e7-1
UCEC	TCGA-AX-A05Z-01	PHACTR4	ENST00000493669.1	chr1	28696254:28696336:28733920:28733974:28785595:28785769,28696254:28696336:28733920:28733974:28784342:28784370,	28733921	28733974	28733920	28733920	Splice_Site	G	T	e1-1
UCEC	TCGA-D1-A103-01	PTPRU	ENST00000460170.2,ENST00000356870.3	chr1	29631863:29631940:29633640:29633658:29637255:29637292,	29633641	29633658	29633659	29633659	Splice_Site	G	A	e19+1
UCEC	TCGA-D1-A16F-01	PUM1	ENST00000532678.1	chr1	31447497:31447649:31454158:31454252:31465236:31465507,	31454159	31454252	31454254	31454254	Splice_Site	T	C	e7-2
UCEC	TCGA-AP-A059-01	ZBTB8OS	ENST00000479075.1	chr1	33099245:33099328:33099551:33099711:33116002:33116126,33099245:33099328:33099551:33099711:33100368:33100393,33099245:33099328:33099551:33099711:33116033:33116126,	33099552	33099711	33099712	33099712	Splice_Site	C	T	NULL
UCEC	TCGA-B5-A0JR-01	NFYC	ENST00000372654.1,ENST00000440226.3,ENST00000372653.1,ENST00000447388.3,ENST00000427410.2,ENST00000372651.1	chr1	41232267:41232375:41235027:41235087:41236380:41236612,	41235028	41235087	41235026	41235026	Splice_Site	A	T	e9-2
UCEC	TCGA-AX-A060-01	CCDC24	ENST00000485811.1,ENST00000479055.1	chr1	44458194:44458311:44459561:44459636:44460779:44460830,	44459562	44459636	44459561	44459561	Splice_Site	G	A	NULL
UCEC	TCGA-BS-A0UM-01	SLC6A9	ENST00000492434.2	chr1	44475636:44475768:44476480:44476554:44489919:44490034,	44476481	44476554	44476479	44476479	Splice_Site	A	G	NULL
UCEC	TCGA-AP-A0LI-01	ERI3	ENST00000457571.1	chr1	44785299:44785416:44804716:44804988:44818521:44818581,	44804717	44804988	44804990	44804990	Splice_Site	T	C	e3-2
UCEC	TCGA-B5-A11I-01	PLK3	ENST00000372201.4	chr1	45270010:45270173:45270321:45270451:45270937:45271051,	45270322	45270451	45270453	45270453	Splice_Site	T	C	e13+2
UCEC	TCGA-AX-A0J0-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521644	46521644	Splice_Site	C	A	e7-1
UCEC	TCGA-AP-A0LM-01	CYP4Z1	ENST00000334194.3	chr1	47548005:47548133:47550291:47550416:47550495:47550650,	47550292	47550416	47550418	47550418	Splice_Site	T	C	e5+2
UCEC	TCGA-BS-A0UV-01	FAF1	ENST00000487898.1,ENST00000396153.2,ENST00000371778.4	chr1	51204534:51204626:51210355:51210447:51253671:51253877,	51210356	51210447	51210448	51210448	Splice_Site	C	A	e5-1
UCEC	TCGA-AP-A051-01	ORC1	ENST00000371568.3,ENST00000371566.1	chr1	52849091:52849241:52849501:52849609:52850221:52850393,	52849502	52849609	52849500	52849500	Splice_Site	A	G	e11+2
UCEC	TCGA-BS-A0UV-01	ZYG11B	ENST00000443756.2,ENST00000294353.6	chr1	53279531:53279584:53282203:53282301:53287110:53287401,	53282204	53282301	53282302	53282302	Splice_Site	G	A	e13+1
UCEC	TCGA-B5-A0JY-01	SLC1A7	ENST00000371494.4	chr1	53554548:53554651:53555471:53555606:53556283:53556478,	53555472	53555606	53555607	53555607	Splice_Site	C	A	e9-1
UCEC	TCGA-AP-A051-01	MAGOH	ENST00000371470.3	chr1	53694543:53694626:53699213:53699324:53701248:53701307,	53699214	53699324	53699325	53699325	Splice_Site	C	A	e3-1
UCEC	TCGA-D1-A103-01	DAB1	ENST00000371234.4,ENST00000371231.1,ENST00000485760.1,ENST00000371236.2	chr1	57535032:57535098:57536695:57536734:57537194:57537314,	57536696	57536734	57536735	57536735	Splice_Site	C	A	e6-1
UCEC	TCGA-D1-A17Q-01	FGGY	ENST00000495718.1,ENST00000371218.4,ENST00000371212.1,ENST00000303721.7,ENST00000430447.1,ENST00000474476.1	chr1	59858879:59858966:59922632:59922748:59977982:59978111,59844420:59844509:59922632:59922748:59977982:59978111,	59922633	59922748	59922632	59922632	Splice_Site	G	T	e5-1
UCEC	TCGA-D1-A15X-01	KANK4	ENST00000371153.4	chr1	62733958:62734177:62737149:62737261:62738875:62740759,	62737150	62737261	62737149	62737149	Splice_Site	C	G	e3+1
UCEC	TCGA-D1-A101-01	DOCK7	ENST00000340370.5,ENST00000454575.1	chr1	62943370:62943496:62953068:62953083:62954604:62954736,	62953069	62953083	62953084	62953084	Splice_Site	C	A	e42-1
UCEC	TCGA-AX-A0J1-01	JAK1	ENST00000342505.4	chr1	65344707:65344831:65348959:65349158:65351941:65352024,	65348960	65349158	65348959	65348959	Splice_Site	C	T	e2+1
UCEC	TCGA-BS-A0UV-01	PTGER3	ENST00000370932.2	chr1	71419445:71419472:71477987:71478167:71512363:71513281,71439979:71440071:71477987:71478167:71512363:71513281,71318255:71318542:71477987:71478167:71512363:71513281,	71477988	71478167	71478168	71478168	Splice_Site	C	A	e2-1
UCEC	TCGA-BS-A0UV-01	PTGER3	ENST00000351052.5	chr1	71439979:71440071:71477900:71478167:71512363:71513281,	71477901	71478167	71478168	71478168	Splice_Site	C	A	e2-1
UCEC	TCGA-B5-A11E-01	ZRANB2	ENST00000370920.3,ENST00000254821.6	chr1	71542477:71542560:71544139:71544248:71544338:71544391,	71544140	71544248	71544139	71544139	Splice_Site	C	T	e3+1
UCEC	TCGA-AX-A05Z-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74507374:74507617:74540344:74540474:74575077:74575237,	74540345	74540474	74540475	74540475	Splice_Site	C	A	e5-1
UCEC	TCGA-AP-A059-01	PIGK	ENST00000370812.3,ENST00000359130.1	chr1	77629530:77629627:77632403:77632515:77634944:77635004,	77632404	77632515	77632517	77632517	Splice_Site	T	C	e5-2
UCEC	TCGA-B5-A0JY-01	MCOLN3	ENST00000370589.2,ENST00000370587.1	chr1	85499780:85499934:85506692:85506860:85510815:85511043,	85506693	85506860	85506861	85506861	Splice_Site	C	A	e2-1
UCEC	TCGA-AP-A0LM-01	MTF2	ENST00000545708.1,ENST00000471953.1,ENST00000476037.1,ENST00000540243.1,ENST00000370298.4,ENST00000467953.1,ENST00000487263.1	chr1	93592788:93592856:93594834:93595005:93599259:93599297,	93594835	93595005	93595007	93595007	Splice_Site	T	C	e11+2
UCEC	TCGA-AP-A056-01	DPYD	ENST00000474241.1	chr1	98164906:98165103:98186380:98186482:98187065:98187136,	98186381	98186482	98186483	98186483	Splice_Site	C	A	e6-1
UCEC	TCGA-AP-A054-01	DRAM2	ENST00000286692.4,ENST00000539140.1,ENST00000484310.1	chr1	111662498:111662581:111663137:111663315:111668848:111668916,111662498:111662581:111663137:111663315:111667363:111667503,	111663138	111663315	111663136	111663136	Splice_Site	A	G	e4+2
UCEC	TCGA-AP-A0LM-01	DENND2D	ENST00000357640.4,ENST00000369752.5	chr1	111731833:111731875:111734761:111734939:111737199:111737348,	111734762	111734939	111734940	111734940	Splice_Site	C	T	e8-1
UCEC	TCGA-D1-A17Q-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115400064:115400118:115401167:115401332:115402363:115402431,	115401168	115401332	115401167	115401167	Splice_Site	G	T	e5-1
UCEC	TCGA-AP-A059-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430246	115430246	Splice_Site	G	A	e14-1
UCEC	TCGA-AP-A051-01	ATP1A1	ENST00000537345.1,ENST00000295598.5,ENST00000369496.4	chr1	116932834:116933033:116933403:116933513:116935475:116935610,	116933404	116933513	116933514	116933514	Splice_Site	G	A	e10+1
UCEC	TCGA-BG-A0LX-01	WDR3	ENST00000349139.5,ENST00000369441.3	chr1	118481102:118481181:118482099:118482195:118483449:118483563,	118482100	118482195	118482099	118482099	Splice_Site	G	T	e5-1
UCEC	TCGA-AX-A0J0-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000481227.2,ENST00000313382.9,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144857639:144857728:144863317:144863442:144864134:144864324,144859890:144859998:144863317:144863442:144864134:144864324,	144863318	144863442	144863443	144863443	Splice_Site	C	A	e37-1
UCEC	TCGA-B5-A0JY-01	CTSK	ENST00000271651.3	chr1	150772019:150772185:150776496:150776715:150778336:150778492,	150776497	150776715	150776717	150776717	Splice_Site	T	G	e4-2
UCEC	TCGA-AP-A0LE-01	ARNT	ENST00000515192.1,ENST00000354396.2,ENST00000505755.1,ENST00000358595.5	chr1	150785647:150785814:150786552:150786715:150788734:150788876,	150786553	150786715	150786552	150786552	Splice_Site	C	T	e20+1
UCEC	TCGA-AP-A059-01	RFX5	ENST00000437327.1,ENST00000290524.4,ENST00000458484.1,ENST00000436271.1,ENST00000368870.2,ENST00000412774.1,ENST00000452513.2,ENST00000392746.3,ENST00000479681.1,ENST00000422595.1,ENST00000430227.1,ENST00000478564.1,ENST00000452671.2,ENST00000450506.1	chr1	151317617:151317664:151318403:151318437:151318680:151318809,	151318404	151318437	151318403	151318403	Splice_Site	C	T	e2+1
UCEC	TCGA-AP-A059-01	RFX5	ENST00000421986.1,ENST00000494217.1	chr1	151317617:151317664:151318403:151318433:151318680:151318809,	151318404	151318433	151318403	151318403	Splice_Site	C	T	e2+1
UCEC	TCGA-D1-A17M-01	TDRKH	ENST00000440583.2,ENST00000458431.2,ENST00000526413.1,ENST00000525790.1,ENST00000368827.6,ENST00000368822.1,ENST00000368823.1,ENST00000368824.3,ENST00000368825.3	chr1	151746888:151746980:151747185:151747282:151747540:151747642,	151747186	151747282	151747185	151747185	Splice_Site	C	T	e11+1
UCEC	TCGA-BG-A0MT-01	ADAM15	ENST00000271836.6,ENST00000368413.1,ENST00000526491.1,ENST00000462116.1,ENST00000355956.2,ENST00000461564.2,ENST00000498481.2,ENST00000531455.1,ENST00000527418.1,ENST00000356955.2,ENST00000359280.4,ENST00000529473.1,ENST00000368410.2,ENST00000472434.1,ENST00000461234.1,ENST00000449910.2	chr1	155032377:155032450:155032680:155032819:155034720:155034845,155032377:155032450:155032680:155032819:155033238:155033308,	155032681	155032819	155032820	155032820	Splice_Site	G	A	e18+1
UCEC	TCGA-BG-A18B-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000350210.2,ENST00000368366.1	chr1	155217864:155218094:155218195:155218264:155220066:155220612,	155218196	155218264	155218265	155218265	Splice_Site	C	A	e10-1
UCEC	TCGA-AP-A059-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156142616:156142797:156144612:156144731:156144876:156145023,	156144613	156144731	156144612	156144612	Splice_Site	G	A	e11-1
UCEC	TCGA-AX-A0J1-01	SMG5	ENST00000361813.5	chr1	156220648:156220787:156221193:156221268:156222204:156222295,	156221194	156221268	156221193	156221193	Splice_Site	C	T	e20+1
UCEC	TCGA-BS-A0UF-01	CCT3	ENST00000368258.3,ENST00000368261.3,ENST00000472765.2,ENST00000295688.3,ENST00000368262.3,ENST00000368259.2	chr1	156287205:156287338:156288658:156288808:156290629:156290816,	156288659	156288808	156288809	156288809	Splice_Site	C	A	e8-1
UCEC	TCGA-AX-A0J1-01	DCAF8	ENST00000326837.2,ENST00000368074.1,ENST00000466253.1,ENST00000608310.1,ENST00000368073.3	chr1	160194231:160194339:160194851:160194909:160195380:160195453,	160194852	160194909	160194851	160194851	Splice_Site	C	T	e7+1
UCEC	TCGA-AP-A0LM-01	FCRLA	ENST00000367953.3,ENST00000367959.2	chr1	161677084:161677133:161680549:161680702:161680997:161681262,161677084:161677133:161680549:161680702:161681723:161682008,161677084:161677133:161680549:161680702:161682874:161683242,161680267:161680282:161680549:161680702:161680997:161681262,	161680550	161680702	161680548	161680548	Splice_Site	A	G	e2-2
UCEC	TCGA-AP-A0LM-01	FCRLA	ENST00000465403.1	chr1	161680267:161680282:161680549:161680653:161680997:161681262,	161680550	161680653	161680548	161680548	Splice_Site	A	G	e2-2
UCEC	TCGA-AX-A063-01	UAP1	ENST00000367924.1,ENST00000367925.1,ENST00000367926.4,ENST00000271469.3	chr1	162535826:162536138:162546566:162546771:162549217:162549393,	162546567	162546771	162546566	162546566	Splice_Site	G	A	e2-1
UCEC	TCGA-BS-A0UV-01	SERPINC1	ENST00000367698.3	chr1	173879891:173880029:173880936:173881152:173883690:173883803,	173880937	173881152	173881153	173881153	Splice_Site	C	A	e3-1
UCEC	TCGA-BS-A0UV-01	ABL2	ENST00000512653.1,ENST00000344730.3,ENST00000504324.1	chr1	179100445:179100616:179102446:179102509:179198375:179198532,179100445:179100616:179102446:179102509:179112067:179112179,	179102447	179102509	179102510	179102510	Splice_Site	C	A	e2-1
UCEC	TCGA-AP-A056-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179631238:179631421:179632482:179632626:179638328:179638539,	179632483	179632626	179632482	179632482	Splice_Site	G	T	e14-1
UCEC	TCGA-D1-A103-01	CACNA1E	ENST00000526775.1,ENST00000357570.5,ENST00000367573.2,ENST00000367567.4,ENST00000367570.1,ENST00000360108.3	chr1	181745236:181745364:181750562:181750659:181752814:181752920,	181750563	181750659	181750660	181750660	Splice_Site	G	A	e39+1
UCEC	TCGA-B5-A0JY-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183201786:183201992:183203501:183203581:183204709:183204865,	183203502	183203581	183203501	183203501	Splice_Site	G	T	e15-1
UCEC	TCGA-AP-A059-01	RGL1	ENST00000536277.1,ENST00000360851.3,ENST00000304685.4,ENST00000539189.1	chr1	183881215:183881402:183885580:183885835:183891355:183891470,	183885581	183885835	183885836	183885836	Splice_Site	G	A	e16+1
UCEC	TCGA-D1-A103-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186122957:186123119:186134242:186134305:186135315:186135435,	186134243	186134305	186134306	186134306	Splice_Site	G	A	e98+1
UCEC	TCGA-AP-A056-01	HMCN1	ENST00000367492.2,ENST00000414277.1	chr1	186141137:186141263:186143645:186143774:186151299:186151419,	186143646	186143774	186143645	186143645	Splice_Site	G	T	e103-1
UCEC	TCGA-D1-A17Q-01	PRG4	ENST00000367486.3,ENST00000367485.4,ENST00000445192.2	chr1	186265977:186266083:186269222:186269345:186270723:186270843,	186269223	186269345	186269222	186269222	Splice_Site	G	T	e2-1
UCEC	TCGA-AX-A0J0-01	CDC73	ENST00000367435.3	chr1	193110979:193111196:193116996:193117095:193119433:193119512,	193116997	193117095	193116996	193116996	Splice_Site	G	T	e8-1
UCEC	TCGA-AX-A0J1-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196697481:196697652:196705953:196706136:196706604:196706790,	196705954	196706136	196706138	196706138	Splice_Site	T	C	e16+2
UCEC	TCGA-D1-A16X-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196712581:196712758:196714946:196715129:196716240:196716634,	196714947	196715129	196714946	196714946	Splice_Site	G	T	e21-1
UCEC	TCGA-B5-A11Y-01	PKP1	ENST00000352845.3,ENST00000367324.3,ENST00000263946.3	chr1	201294068:201294255:201294881:201294966:201297889:201297964,	201294882	201294966	201294880	201294880	Splice_Site	A	G	e13-2
UCEC	TCGA-BS-A0TD-01	PTPN7	ENST00000496197.1,ENST00000308986.5,ENST00000477554.1,ENST00000462815.1,ENST00000544762.1,ENST00000367279.4,ENST00000543735.1,ENST00000480836.1,ENST00000309017.3,ENST00000495688.1	chr1	202117708:202117827:202119438:202119552:202121669:202121827,	202119439	202119552	202119438	202119438	Splice_Site	C	T	e8+1
UCEC	TCGA-BS-A0UV-01	NFASC	ENST00000504476.1,ENST00000505079.1,ENST00000446412.1,ENST00000403080.1,ENST00000401399.1,ENST00000339876.6	chr1	204913515:204913534:204919684:204919702:204921138:204921244,	204919685	204919702	204919703	204919703	Splice_Site	G	A	e2+1
UCEC	TCGA-BS-A0UV-01	SLC26A9	ENST00000491127.1,ENST00000340781.4,ENST00000367135.3,ENST00000367134.2,ENST00000461505.1	chr1	205892462:205892555:205892671:205892741:205893510:205893617,	205892672	205892741	205892742	205892742	Splice_Site	C	A	e13-1
UCEC	TCGA-BG-A0M4-01	HSD11B1	ENST00000261465.1	chr1	209859549:209859630:209878261:209878375:209879155:209879286,	209878262	209878375	209878261	209878261	Splice_Site	G	T	e1-1
UCEC	TCGA-D1-A103-01	MARC2	ENST00000359316.2,ENST00000366913.3	chr1	220921675:220922145:220928288:220928462:220934999:220935106,	220928289	220928462	220928288	220928288	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A051-01	DISP1	ENST00000284476.6	chr1	223165354:223165452:223168226:223168324:223175726:223179337,	223168227	223168324	223168326	223168326	Splice_Site	T	C	e6+2
UCEC	TCGA-AX-A0J1-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934868	223934868	Splice_Site	G	A	e5+1
UCEC	TCGA-AP-A056-01	TP53BP2	ENST00000483398.1,ENST00000498843.1,ENST00000343537.7,ENST00000391879.2,ENST00000391878.2	chr1	223968490:223968596:223971816:223972016:223976709:223976876,	223971817	223972016	223971816	223971816	Splice_Site	C	T	e17+1
UCEC	TCGA-B5-A0JY-01	C1orf131	ENST00000318906.2,ENST00000366649.2	chr1	231362718:231362814:231364895:231364955:231374602:231374639,	231364896	231364955	231364895	231364895	Splice_Site	C	A	e3+1
UCEC	TCGA-B5-A0JY-01	C1orf131	ENST00000486384.1,ENST00000366651.3	chr1	231362718:231362814:231364895:231364952:231374602:231374639,	231364896	231364952	231364895	231364895	Splice_Site	C	A	e3+1
UCEC	TCGA-D1-A103-01	LYST	ENST00000389794.3,ENST00000389793.2	chr1	235904721:235904928:235907278:235907457:235909635:235909827,	235907279	235907457	235907458	235907458	Splice_Site	C	A	e28-1
UCEC	TCGA-AX-A0J0-01	LYST	ENST00000389794.3,ENST00000389793.2	chr1	235904721:235904928:235907278:235907457:235909635:235909827,	235907279	235907457	235907458	235907458	Splice_Site	C	A	e28-1
UCEC	TCGA-AX-A063-01	NID1	ENST00000264187.6	chr1	236156944:236157172:236175220:236175343:236176710:236176860,	236175221	236175343	236175219	236175219	Splice_Site	A	T	e12+2
UCEC	TCGA-AP-A059-01	RGS7	ENST00000440928.1,ENST00000366562.4,ENST00000407727.1,ENST00000366563.1,ENST00000348120.2,ENST00000366565.1,ENST00000331110.7,ENST00000366564.1,ENST00000446183.2,ENST00000401882.1	chr1	240975217:240975343:240976917:240977028:240978015:240978077,	240976918	240977028	240977029	240977029	Splice_Site	C	A	e12-1
UCEC	TCGA-D1-A103-01	HNRNPU	ENST00000483966.1,ENST00000366525.3,ENST00000283179.9,ENST00000444376.2	chr1	245020899:245021019:245021312:245021576:245022030:245022143,	245021313	245021576	245021577	245021577	Splice_Site	C	A	e7-1
UCEC	TCGA-B5-A11E-01	SMYD3	ENST00000541742.1,ENST00000391836.2,ENST00000470510.1,ENST00000490107.1,ENST00000492487.1,ENST00000464398.1,ENST00000493441.1,ENST00000388985.4,ENST00000366516.1,ENST00000366517.1	chr1	246027110:246027188:246078831:246078942:246091232:246091335,	246078832	246078942	246078830	246078830	Splice_Site	A	G	e7+2
UCEC	TCGA-BS-A0UV-01	SMYD3	ENST00000541742.1,ENST00000391836.2,ENST00000470510.1,ENST00000490107.1,ENST00000492487.1,ENST00000464398.1,ENST00000493441.1,ENST00000388985.4,ENST00000366516.1,ENST00000366517.1	chr1	246078831:246078942:246091232:246091335:246093171:246093239,	246091233	246091335	246091336	246091336	Splice_Site	C	T	e6-1
UCEC	TCGA-AP-A059-01	PXDN	ENST00000478155.1,ENST00000252804.4	chr2	1643073:1643194:1647139:1647348:1648389:1648524,	1647140	1647348	1647349	1647349	Splice_Site	C	A	e19-1
UCEC	TCGA-AX-A0J0-01	RPS7	ENST00000407445.3	chr2	3622911:3622940:3623181:3623274:3623406:3623478,	3623182	3623274	3623180	3623180	Splice_Site	A	G	e1-2
UCEC	TCGA-AP-A056-01	MBOAT2	ENST00000474341.1	chr2	9013323:9013430:9017116:9017343:9022640:9022695,	9017117	9017343	9017115	9017115	Splice_Site	A	G	NULL
UCEC	TCGA-D1-A174-01	HS1BP3	ENST00000402541.1,ENST00000304031.3	chr2	20838195:20838412:20840732:20840940:20845099:20845255,	20840733	20840940	20840941	20840941	Splice_Site	C	T	e3-1
UCEC	TCGA-BS-A0UV-01	ADCY3	ENST00000606682.1,ENST00000260600.5,ENST00000405392.1	chr2	25047246:25047405:25048913:25048995:25050414:25050477,	25048914	25048995	25048913	25048913	Splice_Site	C	T	e15+1
UCEC	TCGA-B5-A11G-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000441451.1,ENST00000406567.3	chr2	27354307:27354376:27354539:27354699:27354877:27354950,	27354540	27354699	27354539	27354539	Splice_Site	C	T	e8+1
UCEC	TCGA-AP-A0LM-01	PREB	ENST00000456259.1	chr2	27354307:27354376:27354541:27354699:27354877:27354950,	27354542	27354699	27354540	27354540	Splice_Site	G	A	e3+2
UCEC	TCGA-AP-A059-01	TTC27	ENST00000317907.4	chr2	32897338:32897451:32903922:32903989:32927873:32927987,	32903923	32903989	32903922	32903922	Splice_Site	G	T	e9-1
UCEC	TCGA-B5-A11R-01	TTC27	ENST00000428527.1,ENST00000317907.4	chr2	33007692:33007745:33012050:33012216:33036090:33036288,	33012051	33012216	33012050	33012050	Splice_Site	G	C	e16-1
UCEC	TCGA-BS-A0UF-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33488363:33488459:33498722:33498848:33500031:33500157,	33498723	33498848	33498722	33498722	Splice_Site	G	T	e16-1
UCEC	TCGA-A5-A0GW-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000272273.5,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33590408:33590570:33614250:33614373:33622199:33622349,	33614251	33614373	33614375	33614375	Splice_Site	T	C	e32+2
UCEC	TCGA-D1-A167-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000404971.1	chr2	50850451:50850753:51149006:51149018:51149795:51149825,	51149007	51149018	51149005	51149005	Splice_Site	A	G	e5+2
UCEC	TCGA-AP-A051-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000389980.3	chr2	54850615:54850733:54851940:54852099:54853068:54853371,	54851941	54852099	54851940	54851940	Splice_Site	G	T	e10-1
UCEC	TCGA-BK-A0C9-01	ANXA4	ENST00000394295.4,ENST00000487351.2,ENST00000409920.1	chr2	69969264:69969307:70008651:70008706:70015185:70015273,	70008652	70008706	70008650	70008650	Splice_Site	A	G	e1-2
UCEC	TCGA-BS-A0TC-01	ATP6V1B1	ENST00000432367.1,ENST00000412314.1	chr2	71163050:71163202:71170787:71170843:71185175:71185274,	71170788	71170843	71170845	71170845	Splice_Site	T	C	e2+2
UCEC	TCGA-AJ-A23M-01	POLE4	ENST00000465242.1,ENST00000483063.1	chr2	75186467:75186552:75187231:75187273:75196535:75196850,	75187232	75187273	75187231	75187231	Splice_Site	G	T	e3-1
UCEC	TCGA-AP-A056-01	PTCD3	ENST00000487043.1,ENST00000469585.1,ENST00000254630.7	chr2	86359440:86359547:86360300:86360379:86360468:86360559,	86360301	86360379	86360381	86360381	Splice_Site	T	C	e18+2
UCEC	TCGA-AP-A0LM-01	FAHD2A	ENST00000447036.1,ENST00000233379.4	chr2	96071300:96071551:96072688:96072905:96076274:96076320,	96072689	96072905	96072906	96072906	Splice_Site	G	A	e2+1
UCEC	TCGA-D1-A16X-01	PDCL3	ENST00000264254.6	chr2	101186039:101186183:101188051:101188260:101192815:101193197,	101188052	101188260	101188051	101188051	Splice_Site	G	T	e5-1
UCEC	TCGA-A5-A0VQ-01	NPAS2	ENST00000542504.1,ENST00000335681.5	chr2	101581322:101581405:101582121:101582228:101584742:101584890,	101582122	101582228	101582229	101582229	Splice_Site	G	A	e9+1
UCEC	TCGA-D1-A17Q-01	DPP10	ENST00000393147.2	chr2	115919810:115919849:116066814:116066929:116101392:116101488,115919178:115919605:116066814:116066929:116101392:116101488,	116066815	116066929	116066930	116066930	Splice_Site	G	A	e2+1
UCEC	TCGA-AP-A056-01	C2orf76	ENST00000334816.7	chr2	120078744:120078780:120097402:120097547:120124365:120124401,	120097403	120097547	120097548	120097548	Splice_Site	C	A	e1-1
UCEC	TCGA-AP-A051-01	PTPN4	ENST00000433888.1	chr2	120672754:120672818:120677644:120677817:120684173:120684242,120672754:120672818:120677644:120677817:120689999:120690125,	120677645	120677817	120677644	120677644	Splice_Site	G	T	e11-1
UCEC	TCGA-AP-A0LM-01	SAP130	ENST00000424298.1,ENST00000259234.6,ENST00000259235.3,ENST00000357702.5	chr2	128767924:128767967:128770603:128770728:128772376:128772488,	128770604	128770728	128770602	128770602	Splice_Site	G	A	e6+2
UCEC	TCGA-D1-A176-01	SMPD4	ENST00000453750.1,ENST00000491319.2,ENST00000439886.1,ENST00000351288.6,ENST00000412570.1,ENST00000452225.2,ENST00000339679.7,ENST00000491128.1,ENST00000454468.1,ENST00000443958.2,ENST00000431183.2,ENST00000482171.1,ENST00000426662.2,ENST00000409031.1,ENST00000433118.1	chr2	130910682:130910744:130910891:130911023:130911274:130911508,	130910892	130911023	130910890	130910890	Splice_Site	A	G	e18+2
UCEC	TCGA-AP-A059-01	PTPN18	ENST00000175756.5,ENST00000428843.1,ENST00000479295.1,ENST00000420717.1	chr2	131116840:131116882:131116969:131117065:131117180:131117219,	131116970	131117065	131117066	131117066	Splice_Site	G	A	e4+1
UCEC	TCGA-D1-A167-01	UBXN4	ENST00000272638.9	chr2	136513197:136513261:136519387:136519481:136527338:136527393,	136519388	136519481	136519482	136519482	Splice_Site	G	A	e6+1
UCEC	TCGA-AX-A0J1-01	DARS	ENST00000264161.4,ENST00000537273.1,ENST00000489964.1	chr2	136668951:136669063:136670055:136670136:136672038:136672081,	136670056	136670136	136670055	136670055	Splice_Site	C	T	e13+1
UCEC	TCGA-B5-A0JY-01	LRP1B	ENST00000389484.3	chr2	141130576:141130706:141135748:141135855:141143461:141143578,	141135749	141135855	141135856	141135856	Splice_Site	C	A	e68-1
UCEC	TCGA-D1-A103-01	NEB	ENST00000397337.2,ENST00000397336.2	chr2	152354139:152354232:152354773:152354866:152355811:152355904,152354139:152354232:152354773:152354866:152357904:152357997,152354139:152354232:152354773:152354866:152359306:152359399,	152354774	152354866	152354867	152354867	Splice_Site	C	A	e24-1
UCEC	TCGA-B5-A11E-01	NEB	ENST00000421461.2	chr2	152355811:152355904:152357904:152357997:152359306:152359399,152354773:152354866:152357904:152357997:152359306:152359399,	152357905	152357997	152357903	152357903	Splice_Site	A	G	e23+2
UCEC	TCGA-AX-A05Y-01	NEB	ENST00000413693.1,ENST00000509223.2	chr2	152352818:152352882:152359862:152359955:152361991:152362084,	152359863	152359955	152359956	152359956	Splice_Site	C	A	e137-1
UCEC	TCGA-D1-A16X-01	GALNT13	ENST00000392825.3	chr2	155265522:155265594:155295103:155295238:155306922:155307206,	155295104	155295238	155295239	155295239	Splice_Site	G	A	e10+1
UCEC	TCGA-D1-A16X-01	GALNT13	ENST00000422126.1	chr2	155265522:155265594:155295165:155295238:155306922:155307206,	155295166	155295238	155295239	155295239	Splice_Site	G	A	e10+1
UCEC	TCGA-BS-A0UF-01	SCN9A	ENST00000375387.4,ENST00000454569.1,ENST00000452182.1	chr2	167159599:167159812:167160540:167160632:167162301:167162430,	167160541	167160632	167160633	167160633	Splice_Site	C	A	e5-1
UCEC	TCGA-BG-A187-01	METTL8	ENST00000442778.1	chr2	172216931:172217023:172248552:172248707:172271112:172271236,172216931:172217023:172248552:172248707:172289535:172289626,172216931:172217023:172248552:172248707:172290392:172290500,172216931:172217023:172248552:172248707:172291183:172291290,	172248553	172248707	172248708	172248708	Splice_Site	C	G	e1-1
UCEC	TCGA-AP-A056-01	CDCA7	ENST00000410019.3,ENST00000347703.3,ENST00000410101.3,ENST00000496441.1,ENST00000306721.3	chr2	174231010:174231160:174231877:174232014:174232361:174232448,	174231878	174232014	174231876	174231876	Splice_Site	A	C	e9-2
UCEC	TCGA-AP-A056-01	AGPS	ENST00000264167.4	chr2	178307134:178307214:178310273:178310354:178326620:178326746,	178310274	178310354	178310273	178310273	Splice_Site	G	A	e8-1
UCEC	TCGA-A5-A0GP-01	AGPS	ENST00000264167.4	chr2	178307134:178307214:178310273:178310354:178326620:178326746,	178310274	178310354	178310273	178310273	Splice_Site	G	A	e8-1
UCEC	TCGA-AP-A051-01	TTN	ENST00000589042.1	chr2	179532364:179532448:179534099:179534174:179534318:179534402,	179534100	179534174	179534099	179534099	Splice_Site	C	A	e5+1
UCEC	TCGA-AP-A059-01	ZSWIM2	ENST00000295131.2	chr2	187703685:187703896:187709443:187709484:187712445:187712522,	187709444	187709484	187709485	187709485	Splice_Site	C	T	e3-1
UCEC	TCGA-AP-A059-01	DNAH7	ENST00000312428.6	chr2	196851789:196851917:196852680:196852953:196865427:196865607,	196852681	196852953	196852954	196852954	Splice_Site	C	A	e13-1
UCEC	TCGA-B5-A11N-01	SATB2	ENST00000457245.1,ENST00000443023.1,ENST00000417098.1,ENST00000260926.5	chr2	200213423:200213896:200233327:200233430:200245086:200245210,	200233328	200233430	200233326	200233326	Splice_Site	A	G	e5+2
UCEC	TCGA-AP-A056-01	CASP8	ENST00000432109.2,ENST00000358485.4,ENST00000339403.6	chr2	202137360:202137499:202137620:202137665:202141549:202141627,202137360:202137499:202137620:202137665:202139611:202139676,	202137621	202137665	202137666	202137666	Splice_Site	G	A	e5+1
UCEC	TCGA-AP-A056-01	STRADB	ENST00000194530.3,ENST00000392249.2	chr2	202319468:202319575:202323506:202323587:202337677:202337799,202319468:202319575:202323506:202323587:202334675:202334775,	202323507	202323587	202323506	202323506	Splice_Site	G	T	e2-1
UCEC	TCGA-B5-A0JY-01	CDK15	ENST00000450471.2,ENST00000260967.2,ENST00000374598.4,ENST00000451080.1,ENST00000434439.1,ENST00000410091.3	chr2	202687531:202687626:202688387:202688450:202698570:202698694,	202688388	202688450	202688452	202688452	Splice_Site	T	G	e5+2
UCEC	TCGA-BS-A0UV-01	CD28	ENST00000374481.3	chr2	204591355:204591421:204591673:204591712:204594370:204594495,	204591674	204591712	204591673	204591673	Splice_Site	G	T	e3-1
UCEC	TCGA-B5-A11E-01	CTLA4	ENST00000302823.3	chr2	204735308:204735656:204736100:204736210:204737430:204737498,	204736101	204736210	204736211	204736211	Splice_Site	G	C	e3+1
UCEC	TCGA-D1-A0ZS-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	207003208:207003338:207006664:207006793:207007409:207007549,	207006665	207006793	207006794	207006794	Splice_Site	C	T	e11-1
UCEC	TCGA-A5-A0GW-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4,ENST00000392202.3,ENST00000407449.1,ENST00000308862.6,ENST00000452564.1	chr2	209165660:209165818:209166965:209167077:209168894:209169042,	209166966	209167077	209167079	209167079	Splice_Site	T	C	e9+2
UCEC	TCGA-D1-A16Y-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4	chr2	209168929:209169042:209169569:209169737:209176959:209177019,	209169570	209169737	209169569	209169569	Splice_Site	G	T	e11-1
UCEC	TCGA-B5-A0K9-01	MYL1	ENST00000352451.3,ENST00000496436.1,ENST00000341685.4	chr2	211155755:211155798:211158446:211158524:211158968:211159142,	211158447	211158524	211158526	211158526	Splice_Site	T	C	e5-2
UCEC	TCGA-A5-A0VP-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216229601:216229708:216230227:216230353:216232585:216232750,	216230228	216230353	216230227	216230227	Splice_Site	C	T	e43+1
UCEC	TCGA-AP-A054-01	GMPPA	ENST00000358215.3,ENST00000443704.1,ENST00000435316.1,ENST00000313597.5,ENST00000373908.1,ENST00000373917.3,ENST00000341142.3	chr2	220368804:220368935:220369949:220370084:220370179:220370253,	220369950	220370084	220369948	220369948	Splice_Site	A	G	e7-2
UCEC	TCGA-AP-A059-01	GMPPA	ENST00000443704.1	chr2	220370184:220370277:220370416:220370483:220370701:220370794,	220370417	220370483	220370416	220370416	Splice_Site	G	A	e9-1
UCEC	TCGA-D1-A17R-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1,ENST00000441679.1	chr2	222322673:222322710:222347071:222347410:222365736:222365892,	222347072	222347410	222347411	222347411	Splice_Site	C	A	e5-1
UCEC	TCGA-BG-A0MQ-01	WDFY1	ENST00000233055.4	chr2	224744840:224744949:224746658:224746789:224749364:224749466,	224746659	224746789	224746657	224746657	Splice_Site	A	G	e10+2
UCEC	TCGA-B5-A0JY-01	COL4A3	ENST00000396578.3	chr2	228144508:228144606:228145155:228145306:228145608:228145722,	228145156	228145306	228145307	228145307	Splice_Site	G	T	e30+1
UCEC	TCGA-A5-A0GA-01	DNER	ENST00000341772.4	chr2	230231588:230231835:230252980:230253112:230271947:230272061,	230252981	230253112	230252980	230252980	Splice_Site	C	T	e11+1
UCEC	TCGA-BG-A0LX-01	TRIP12	ENST00000487178.1,ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230668286:230668405:230668714:230668943:230670445:230670518,	230668715	230668943	230668714	230668714	Splice_Site	C	T	e17+1
UCEC	TCGA-AP-A0LM-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000479037.1,ENST00000389044.4	chr2	230672423:230672580:230672967:230673085:230675595:230675761,	230672968	230673085	230673086	230673086	Splice_Site	C	A	e14-1
UCEC	TCGA-AX-A0J0-01	SP140L	ENST00000415673.2	chr2	231264841:231264957:231265669:231265778:231266080:231266158,	231265670	231265778	231265669	231265669	Splice_Site	G	T	e16-1
UCEC	TCGA-B5-A11N-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000390005.5,ENST00000273009.6	chr2	232952196:232952431:232995328:232995429:233001181:233001429,	232995329	232995429	232995430	232995430	Splice_Site	G	A	e6+1
UCEC	TCGA-D1-A16X-01	UBE2F	ENST00000448502.1	chr2	238903385:238903451:238925174:238925275:238933982:238934053,	238925175	238925275	238925174	238925174	Splice_Site	G	T	e4-1
UCEC	TCGA-B5-A11N-01	ILKAP	ENST00000457149.1	chr2	239096771:239096898:239098499:239098613:239102915:239102972,	239098500	239098613	239098614	239098614	Splice_Site	C	T	e4-1
UCEC	TCGA-B5-A11N-01	ILKAP	ENST00000254654.3	chr2	239096771:239096898:239098493:239098613:239102915:239102972,	239098494	239098613	239098614	239098614	Splice_Site	C	T	e4-1
UCEC	TCGA-B5-A11N-01	ILKAP	ENST00000463129.1	chr2	239096771:239096898:239098503:239098613:239102915:239102972,	239098504	239098613	239098614	239098614	Splice_Site	C	T	e4-1
UCEC	TCGA-B5-A11N-01	ANKMY1	ENST00000403283.1	chr2	241439960:241439982:241446976:241447108:241448764:241448872,241439960:241439982:241446976:241447108:241452218:241452359,241439960:241439982:241446976:241447108:241451277:241451418,	241446977	241447108	241446976	241446976	Splice_Site	C	T	e11+1
UCEC	TCGA-AP-A051-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000418082.1,ENST00000373287.4	chr2	242343242:242343347:242344213:242344256:242344670:242344818,242343242:242343347:242344213:242344256:242346951:242347023,	242344214	242344256	242344257	242344257	Splice_Site	G	T	e3+1
UCEC	TCGA-AP-A0L8-01	IL17RE	ENST00000421412.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3,ENST00000383815.3,ENST00000434065.1	chr3	9952940:9952984:9953126:9953281:9955639:9955708,	9953127	9953281	9953125	9953125	Splice_Site	A	C	e12-2
UCEC	TCGA-BS-A0TA-01	CRELD1	ENST00000383811.3,ENST00000397170.3,ENST00000452070.1,ENST00000326434.5	chr3	9979245:9979356:9979698:9979790:9982533:9982700,	9979699	9979790	9979791	9979791	Splice_Site	G	A	e4+1
UCEC	TCGA-A5-A0GP-01	TAMM41	ENST00000457498.1,ENST00000444133.2,ENST00000273037.5,ENST00000455809.1,ENST00000411947.1	chr3	11880695:11880788:11885502:11885685:11887975:11888246,	11885503	11885685	11885501	11885501	Splice_Site	A	G	e2+2
UCEC	TCGA-AP-A056-01	TMEM40	ENST00000476331.1,ENST00000435575.1,ENST00000480698.1,ENST00000435218.2,ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12778076:12778151:12778262:12778334:12779205:12779253,	12778263	12778334	12778262	12778262	Splice_Site	C	T	e8+1
UCEC	TCGA-AP-A054-01	CAPN7	ENST00000472400.1,ENST00000253693.2,ENST00000463417.1	chr3	15288833:15288964:15292437:15292530:15292622:15292753,	15292438	15292530	15292436	15292436	Splice_Site	A	G	e20-2
UCEC	TCGA-BS-A0TJ-01	EAF1	ENST00000396842.2	chr3	15471422:15471514:15473593:15473730:15475854:15476045,	15473594	15473730	15473731	15473731	Splice_Site	G	A	e3+1
UCEC	TCGA-AP-A059-01	TBC1D5	ENST00000445294.1,ENST00000446818.2,ENST00000253692.7	chr3	17469941:17470011:17549965:17550097:17664139:17664257,17469941:17470011:17549965:17550097:17783972:17783990,17447963:17448018:17549965:17550097:17664139:17664257,17447963:17448018:17549965:17550097:17665340:17665405,17447963:17448018:17549965:17550097:17783972:17783990,17469941:17470011:17549965:17550097:17665340:17665405,	17549966	17550097	17550098	17550098	Splice_Site	C	T	e1-1
UCEC	TCGA-AP-A059-01	SLC4A7	ENST00000454389.1,ENST00000295736.5,ENST00000388777.4	chr3	27465527:27465643:27472788:27473160:27475445:27475595,27465527:27465643:27472788:27473160:27475406:27475595,	27472789	27473160	27473161	27473161	Splice_Site	C	A	e7-1
UCEC	TCGA-BS-A0UF-01	FBXL2	ENST00000464164.1,ENST00000507198.1,ENST00000484457.1,ENST00000538892.1,ENST00000421391.1	chr3	33339155:33339217:33400458:33400513:33400774:33400849,	33400459	33400513	33400458	33400458	Splice_Site	G	T	e3-1
UCEC	TCGA-AX-A0J0-01	TRANK1	ENST00000429976.2,ENST00000301807.6,ENST00000513141.1	chr3	36902505:36902651:36905809:36905971:36915616:36915724,	36905810	36905971	36905972	36905972	Splice_Site	C	A	NULL
UCEC	TCGA-D1-A103-01	MYRIP	ENST00000482033.1,ENST00000458292.1,ENST00000302541.6,ENST00000539167.1,ENST00000425621.1,ENST00000459828.1,ENST00000444716.1	chr3	40192538:40192675:40204220:40204301:40208336:40208434,	40204221	40204301	40204302	40204302	Splice_Site	G	C	e4+1
UCEC	TCGA-B5-A0JY-01	ULK4	ENST00000301831.4,ENST00000420927.1	chr3	41954298:41954391:41957468:41957544:41959948:41960032,	41957469	41957544	41957545	41957545	Splice_Site	C	A	e7-1
UCEC	TCGA-AP-A051-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000265537.3	chr3	45537766:45537865:45541933:45542071:45554626:45554727,	45541934	45542071	45541932	45541932	Splice_Site	A	T	e13-2
UCEC	TCGA-D1-A103-01	PTH1R	ENST00000418619.1,ENST00000430002.2,ENST00000427125.2,ENST00000313049.5,ENST00000449590.1,ENST00000428220.1,ENST00000490109.1	chr3	46939563:46939682:46939867:46939962:46940151:46940224,	46939868	46939962	46939867	46939867	Splice_Site	G	T	e6-1
UCEC	TCGA-AP-A056-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47125209:47125872:47127684:47127804:47129602:47129737,	47127685	47127804	47127805	47127805	Splice_Site	C	A	e11-1
UCEC	TCGA-B5-A0JN-01	MAP4	ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47898920:47899002:47908735:47908828:47912302:47912595,47898920:47899002:47908735:47908828:47910703:47910817,	47908736	47908828	47908735	47908735	Splice_Site	C	T	e14+1
UCEC	TCGA-BS-A0UM-01	IMPDH2	ENST00000429182.1,ENST00000326739.4	chr3	49061761:49061837:49061927:49062011:49062091:49062235,	49061928	49062011	49061927	49061927	Splice_Site	C	T	e13+1
UCEC	TCGA-AP-A054-01	NPRL2	ENST00000493465.1	chr3	50385189:50385332:50385957:50385994:50386115:50386213,	50385958	50385994	50385996	50385997	Splice_Site	-	GA	e7-2
UCEC	TCGA-B5-A11J-01	NPRL2	ENST00000493465.1	chr3	50385189:50385332:50385957:50385994:50386115:50386213,	50385958	50385994	50385996	50385997	Splice_Site	-	GA	e7-2
UCEC	TCGA-BS-A0TJ-01	STAB1	ENST00000321725.6	chr3	52547898:52547997:52548130:52548229:52548380:52548512,	52548131	52548229	52548230	52548230	Splice_Site	G	A	e33+1
UCEC	TCGA-AX-A0J1-01	APPL1	ENST00000444459.1,ENST00000482800.1,ENST00000288266.3	chr3	57274492:57274580:57276128:57276170:57276883:57276920,	57276129	57276170	57276171	57276171	Splice_Site	G	A	e6+1
UCEC	TCGA-D1-A103-01	MAGI1	ENST00000483466.1,ENST00000402939.2,ENST00000497477.2,ENST00000460329.2,ENST00000472257.1,ENST00000463103.2,ENST00000330909.8,ENST00000470990.1	chr3	65428466:65428524:65433696:65433732:65438932:65439015,	65433697	65433732	65433695	65433695	Splice_Site	A	T	e7+2
UCEC	TCGA-B5-A11E-01	DCBLD2	ENST00000326857.9	chr3	98568304:98568442:98600383:98600611:98619965:98619984,	98600384	98600611	98600612	98600612	Splice_Site	C	T	e2-1
UCEC	TCGA-A5-A0VP-01	LNP1	ENST00000466996.1	chr3	100148540:100148729:100170579:100170793:100174620:100175032,	100170580	100170793	100170795	100170795	Splice_Site	T	C	e2+2
UCEC	TCGA-A5-A0VP-01	LNP1	ENST00000489752.1	chr3	100148540:100148729:100170523:100170793:100174620:100175032,	100170524	100170793	100170795	100170795	Splice_Site	T	C	e2+2
UCEC	TCGA-A5-A0VP-01	LNP1	ENST00000383693.3	chr3	100148540:100148729:100170562:100170793:100174620:100175032,	100170563	100170793	100170795	100170795	Splice_Site	T	C	e2+2
UCEC	TCGA-AP-A0LM-01	ZPLD1	ENST00000306176.1,ENST00000466937.1,ENST00000491959.1	chr3	102171762:102171983:102175036:102175218:102176624:102176697,	102175037	102175218	102175036	102175036	Splice_Site	G	T	e4-1
UCEC	TCGA-B5-A0JY-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105464760:105464882:105470305:105470462:105495239:105495386,	105470306	105470462	105470463	105470463	Splice_Site	C	A	e4-1
UCEC	TCGA-AP-A0LM-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108363010:108363628:108365463:108365496:108366789:108366959,	108365464	108365496	108365497	108365497	Splice_Site	G	A	e14+1
UCEC	TCGA-B5-A11N-01	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682456	108682456	Splice_Site	C	A	e27-1
UCEC	TCGA-AP-A051-01	BOC	ENST00000479182.1,ENST00000355385.3,ENST00000495514.1,ENST00000466059.1,ENST00000273395.4	chr3	112999877:113000000:113002257:113002479:113003181:113003414,	113002258	113002479	113002257	113002257	Splice_Site	G	A	e14-1
UCEC	TCGA-B5-A11E-01	GRAMD1C	ENST00000472384.1,ENST00000498183.1,ENST00000484714.2,ENST00000486457.1,ENST00000358160.4	chr3	113557746:113557783:113563349:113563496:113588353:113588438,	113563350	113563496	113563349	113563349	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A051-01	FAM162A	ENST00000469967.1,ENST00000232125.5,ENST00000477892.1	chr3	122121610:122121729:122123104:122123210:122126127:122126236,	122123105	122123210	122123104	122123104	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UV-01	ROPN1	ENST00000405845.3,ENST00000184183.4	chr3	123688888:123689064:123694225:123694387:123695710:123695828,	123694226	123694387	123694388	123694388	Splice_Site	C	T	e3-1
UCEC	TCGA-B5-A11J-01	ITGB5	ENST00000461306.1,ENST00000460797.1,ENST00000296181.4	chr3	124483303:124483404:124485072:124485192:124487859:124487958,	124485073	124485192	124485194	124485194	Splice_Site	T	C	e13-2
UCEC	TCGA-AP-A051-01	ROPN1B	ENST00000251776.4,ENST00000505382.1,ENST00000514116.1,ENST00000511082.1	chr3	125695846:125696008:125701112:125701288:125702096:125702294,	125701113	125701288	125701290	125701290	Splice_Site	T	C	e4+2
UCEC	TCGA-B5-A0JY-01	CHCHD6	ENST00000508789.1,ENST00000503119.1,ENST00000290913.3	chr3	126571489:126571573:126633522:126633593:126676258:126676394,	126633523	126633593	126633522	126633522	Splice_Site	G	T	e6-1
UCEC	TCGA-B5-A11E-01	ACAD9	ENST00000308982.7,ENST00000514336.1,ENST00000512801.1,ENST00000505867.1,ENST00000511227.1,ENST00000514643.1,ENST00000505192.1	chr3	128612397:128612499:128614152:128614259:128615278:128615309,	128614153	128614259	128614260	128614260	Splice_Site	G	A	e4+1
UCEC	TCGA-AP-A0LM-01	ASTE1	ENST00000514044.1,ENST00000264992.3	chr3	130735134:130735183:130737349:130737560:130742848:130743082,	130737350	130737560	130737348	130737348	Splice_Site	A	G	e2+2
UCEC	TCGA-BS-A0UV-01	NEK11	ENST00000507910.1,ENST00000510688.1,ENST00000514915.1,ENST00000429253.2,ENST00000510474.1,ENST00000383366.4,ENST00000508196.1,ENST00000412440.2,ENST00000356918.4,ENST00000511262.1	chr3	130871474:130871553:130873879:130873965:130881251:130881371,	130873880	130873965	130873879	130873879	Splice_Site	G	T	e8-1
UCEC	TCGA-BS-A0UV-01	MRPL3	ENST00000510923.1,ENST00000512877.1	chr3	131219273:131219365:131220374:131220559:131221573:131221795,	131220375	131220559	131220560	131220560	Splice_Site	C	A	e2-1
UCEC	TCGA-BG-A0VZ-01	ACPP	ENST00000336375.5,ENST00000351273.7,ENST00000512463.1	chr3	132056299:132056398:132061395:132061488:132063770:132063903,	132061396	132061488	132061395	132061395	Splice_Site	G	T	e6-1
UCEC	TCGA-EY-A212-01	NPHP3	ENST00000471702.1,ENST00000337331.5,ENST00000490993.1	chr3	132413670:132413809:132415574:132415657:132416103:132416206,	132415575	132415657	132415574	132415574	Splice_Site	C	T	e15+1
UCEC	TCGA-AP-A054-01	TOPBP1	ENST00000260810.5	chr3	133368777:133368787:133371306:133371473:133372188:133372312,	133371307	133371473	133371475	133371475	Splice_Site	T	C	e7-2
UCEC	TCGA-B5-A11E-01	SRPRB	ENST00000466636.1,ENST00000494297.1,ENST00000466490.2,ENST00000481356.1	chr3	133529967:133530043:133534433:133534570:133535721:133535776,	133534434	133534570	133534432	133534432	Splice_Site	A	C	e5-2
UCEC	TCGA-BS-A0UV-01	RYK	ENST00000296084.4,ENST00000472234.1,ENST00000427044.2,ENST00000460933.1	chr3	133894777:133894883:133896784:133896917:133901845:133901877,	133896785	133896917	133896918	133896918	Splice_Site	C	A	NULL
UCEC	TCGA-AP-A054-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136085784:136085924:136087949:136088124:136096501:136096594,	136087950	136088124	136087948	136087948	Splice_Site	A	G	e23+2
UCEC	TCGA-AP-A05N-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142222203:142222295:142223980:142224145:142226772:142226951,	142223981	142224145	142224146	142224146	Splice_Site	C	T	e29-1
UCEC	TCGA-AX-A05Z-01	U2SURP	ENST00000488497.3,ENST00000493598.2,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142772517:142772636:142773784:142773961:142775153:142775342,	142773785	142773961	142773963	142773963	Splice_Site	T	G	e27+2
UCEC	TCGA-D1-A16Y-01	MME	ENST00000462745.1,ENST00000492661.1,ENST00000493237.1,ENST00000360490.2,ENST00000460393.1,ENST00000495577.1	chr3	154884690:154884810:154886280:154886414:154886520:154886586,	154886281	154886414	154886415	154886415	Splice_Site	G	A	e18+1
UCEC	TCGA-D1-A17Q-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548830	165548830	Splice_Site	C	A	e1-1
UCEC	TCGA-BS-A0TC-01	EIF5A2	ENST00000295822.2	chr3	170611137:170611208:170612080:170612212:170624777:170624882,	170612081	170612212	170612213	170612213	Splice_Site	C	T	e3-1
UCEC	TCGA-AP-A059-01	PARL	ENST00000421484.1	chr3	183562018:183562114:183580484:183580589:183584412:183584553,	183580485	183580589	183580483	183580483	Splice_Site	A	C	e4+2
UCEC	TCGA-BS-A0UV-01	IQCG	ENST00000490748.1,ENST00000478903.1,ENST00000265239.6,ENST00000455191.1	chr3	197616283:197616585:197618316:197618418:197619498:197619630,	197618317	197618418	197618315	197618315	Splice_Site	A	G	e9+2
UCEC	TCGA-D1-A103-01	TMEM175	ENST00000515876.1,ENST00000264771.4,ENST00000514546.1	chr4	926274:926328:941903:941942:944208:944279,941496:941680:941903:941942:944208:944279,	941904	941942	941903	941903	Splice_Site	G	T	e2-1
UCEC	TCGA-D1-A103-01	TMEM175	ENST00000452360.2,ENST00000438836.2	chr4	941496:941680:941903:942403:944208:944279,	941904	942403	941903	941903	Splice_Site	G	T	e2-1
UCEC	TCGA-D1-A17Q-01	SLBP	ENST00000480936.1,ENST00000429429.2,ENST00000489418.1	chr4	1701290:1701428:1701737:1701797:1705322:1705427,	1701738	1701797	1701798	1701798	Splice_Site	C	A	e4-1
UCEC	TCGA-BS-A0UV-01	HTT	ENST00000355072.5	chr4	3088665:3088749:3101000:3101121:3105550:3105610,	3101001	3101121	3101000	3101000	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UJ-01	KIAA0232	ENST00000425103.1	chr4	6784466:6784568:6825911:6826411:6843793:6843931,	6825912	6826411	6826412	6826412	Splice_Site	G	A	e1+1
UCEC	TCGA-BS-A0UV-01	RAB28	ENST00000288723.4	chr4	13362977:13363257:13371494:13371589:13378168:13378246,13370124:13370274:13371494:13371589:13378168:13378228,	13371495	13371589	13371494	13371494	Splice_Site	C	A	e7+1
UCEC	TCGA-AX-A0J1-01	FBXL5	ENST00000513163.1,ENST00000382358.4,ENST00000412094.2,ENST00000511441.1,ENST00000341285.3	chr4	15606630:15607422:15613888:15614037:15626874:15627600,	15613889	15614037	15613888	15613888	Splice_Site	C	T	e10+1
UCEC	TCGA-B5-A11E-01	LCORL	ENST00000510451.1,ENST00000539056.1	chr4	17887690:17887784:17910716:17910968:17963525:17963655,17847312:17847524:17910716:17910968:17963525:17963655,	17910717	17910968	17910716	17910716	Splice_Site	C	T	e5+1
UCEC	TCGA-B5-A11M-01	LCORL	ENST00000512376.2,ENST00000382224.1,ENST00000326877.4,ENST00000382226.5	chr4	17963525:17963655:17964592:17964672:17974442:17974508,	17964593	17964672	17964590	17964591	Splice_Site	-	A	e3+2
UCEC	TCGA-AP-A051-01	LCORL	ENST00000510451.1,ENST00000539056.1	chr4	17964592:17964672:17974442:17974508:18023220:18023378,17963525:17963655:17974442:17974508:18023220:18023378,	17974443	17974508	17974509	17974509	Splice_Site	C	A	e2-1
UCEC	TCGA-BS-A0UF-01	TBC1D19	ENST00000512840.1,ENST00000264866.4,ENST00000513596.1,ENST00000502873.1,ENST00000504442.1,ENST00000515568.1	chr4	26616029:26616075:26622234:26622310:26638832:26638907,	26622235	26622310	26622234	26622234	Splice_Site	G	T	e4-1
UCEC	TCGA-AP-A059-01	STIM2	ENST00000463501.1,ENST00000467087.1,ENST00000467011.1,ENST00000494628.2,ENST00000465503.1,ENST00000237364.5,ENST00000382009.3,ENST00000412829.2	chr4	26997000:26997112:27000853:27000969:27003838:27003850,	27000854	27000969	27000970	27000970	Splice_Site	G	A	e5+1
UCEC	TCGA-BS-A0UV-01	ARAP2	ENST00000303965.4	chr4	36075310:36075445:36081837:36081901:36083872:36083908,	36081838	36081901	36081837	36081837	Splice_Site	C	T	e30+1
UCEC	TCGA-AP-A051-01	WDR19	ENST00000509560.1,ENST00000399820.3,ENST00000506503.1	chr4	39191275:39191401:39196163:39196279:39201097:39201213,	39196164	39196279	39196163	39196163	Splice_Site	G	T	e5-1
UCEC	TCGA-BS-A0UV-01	TMEM33	ENST00000264452.5	chr4	41940618:41940713:41945763:41945831:41946809:41946943,	41945764	41945831	41945832	41945832	Splice_Site	G	A	e4+1
UCEC	TCGA-AX-A05Z-01	TMEM33	ENST00000264452.5	chr4	41940618:41940713:41945763:41945831:41946809:41946943,	41945764	41945831	41945832	41945832	Splice_Site	G	A	e4+1
UCEC	TCGA-AP-A059-01	GUF1	ENST00000513775.1,ENST00000506793.1,ENST00000281543.5	chr4	44685251:44685335:44687975:44688040:44688526:44688730,	44687976	44688040	44688041	44688041	Splice_Site	G	T	e7+1
UCEC	TCGA-AP-A054-01	CHIC2	ENST00000263921.3	chr4	54880003:54880063:54880229:54880286:54915121:54915277,	54880230	54880286	54880228	54880228	Splice_Site	A	G	e4+2
UCEC	TCGA-AP-A0LM-01	AASDH	ENST00000602986.1,ENST00000503808.1	chr4	57248642:57248763:57250235:57250507:57253527:57253589,57244313:57244630:57250235:57250507:57253527:57253589,	57250236	57250507	57250508	57250508	Splice_Site	C	A	e1-1
UCEC	TCGA-BS-A0UM-01	SULT1B1	ENST00000512870.1	chr4	70620387:70620516:70620787:70620919:70626176:70626289,	70620788	70620919	70620787	70620787	Splice_Site	C	A	e1+1
UCEC	TCGA-B5-A11E-01	PARM1	ENST00000307428.7	chr4	75858325:75858580:75937634:75938360:75959092:75959171,	75937635	75938360	75938361	75938361	Splice_Site	G	A	e2+1
UCEC	TCGA-AP-A051-01	NUP54	ENST00000508465.1	chr4	77036590:77036647:77038816:77038895:77039227:77039347,	77038817	77038895	77038816	77038816	Splice_Site	C	T	e11+1
UCEC	TCGA-AP-A051-01	NUP54	ENST00000458189.2,ENST00000512151.1,ENST00000507257.1,ENST00000264883.3,ENST00000502850.1,ENST00000514987.1,ENST00000513248.1,ENST00000342467.6	chr4	77036590:77036647:77038816:77038927:77039227:77039347,	77038817	77038927	77038816	77038816	Splice_Site	C	T	e11+1
UCEC	TCGA-AP-A059-01	ENOPH1	ENST00000509635.1	chr4	83351814:83352037:83369072:83369174:83375874:83376007,83351814:83352037:83369072:83369174:83372195:83372398,	83369073	83369174	83369072	83369072	Splice_Site	G	T	e2-1
UCEC	TCGA-AX-A0J1-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87656746:87656899:87662786:87662969:87666118:87666281,	87662787	87662969	87662971	87662971	Splice_Site	T	C	e15+2
UCEC	TCGA-AX-A063-01	HERC3	ENST00000264345.3,ENST00000512194.1,ENST00000543130.1,ENST00000402738.1	chr4	89597484:89597574:89599114:89599285:89601243:89601387,	89599115	89599285	89599113	89599113	Splice_Site	A	G	e17-2
UCEC	TCGA-D1-A17U-01	FAM13A	ENST00000264344.5,ENST00000515600.1,ENST00000509094.1	chr4	89859238:89859392:89941610:89941820:89950610:89950800,89912123:89912301:89941610:89941820:89950610:89950800,	89941611	89941820	89941610	89941610	Splice_Site	C	-	e3+1
UCEC	TCGA-D1-A16Y-01	ADH6	ENST00000394899.2,ENST00000507484.1,ENST00000407820.2,ENST00000237653.7	chr4	100126081:100126220:100128602:100128738:100129824:100129971,	100128603	100128738	100128601	100128601	Splice_Site	A	G	e7+2
UCEC	TCGA-B5-A0JY-01	ADH6	ENST00000394899.2,ENST00000507484.1,ENST00000407820.2,ENST00000237653.7	chr4	100126081:100126220:100128602:100128738:100129824:100129971,	100128603	100128738	100128602	100128602	Splice_Site	C	T	e7+1
UCEC	TCGA-AX-A06H-01	TET2	ENST00000380013.4,ENST00000540549.1,ENST00000513237.1	chr4	106155053:106158508:106162495:106162586:106163990:106164084,	106162496	106162586	106162494	106162494	Splice_Site	A	C	e2-2
UCEC	TCGA-D1-A17Q-01	PPA2	ENST00000348706.5,ENST00000514209.1	chr4	106326994:106327105:106345352:106345479:106359106:106359193,106320307:106320321:106345352:106345479:106359106:106359193,106320307:106320321:106345352:106345479:106367539:106367659,	106345353	106345479	106345480	106345480	Splice_Site	C	A	e7-1
UCEC	TCGA-AP-A059-01	PAPSS1	ENST00000514489.1,ENST00000502431.1,ENST00000265174.4	chr4	108608284:108608333:108614926:108615162:108622326:108622441,	108614927	108615162	108614925	108614925	Splice_Site	A	G	e3+2
UCEC	TCGA-BS-A0UV-01	OSTC	ENST00000512478.2	chr4	109571782:109571950:109576719:109576813:109578605:109578768,	109576720	109576813	109576814	109576814	Splice_Site	G	T	e2+1
UCEC	TCGA-D1-A17Q-01	EGF	ENST00000503392.1,ENST00000265171.5	chr4	110834396:110834618:110862101:110862301:110864409:110864591,	110862102	110862301	110862302	110862302	Splice_Site	G	A	e2+1
UCEC	TCGA-B5-A11N-01	EGF	ENST00000509793.1	chr4	110866228:110866431:110882022:110882145:110883018:110883141,	110882023	110882145	110882147	110882147	Splice_Site	T	C	e7+2
UCEC	TCGA-B5-A0JR-01	NDUFC1	ENST00000539387.1,ENST00000394228.1,ENST00000539002.1,ENST00000503453.1,ENST00000265500.4,ENST00000394223.1,ENST00000394225.2,ENST00000505036.1,ENST00000544855.1	chr4	140211184:140211246:140213683:140213763:140216196:140216294,	140213684	140213763	140213765	140213765	Splice_Site	T	C	e3-2
UCEC	TCGA-AX-A05Z-01	GYPB	ENST00000429670.2,ENST00000508618.1,ENST00000507009.1,ENST00000503255.1,ENST00000502664.1	chr4	144920563:144920602:144922337:144922436:144940403:144940477,	144922338	144922436	144922437	144922437	Splice_Site	C	A	e2-1
UCEC	TCGA-D1-A17Q-01	ANAPC10	ENST00000502562.1,ENST00000507656.1	chr4	146002811:146002902:146017136:146017263:146019282:146019316,146002811:146002902:146017136:146017263:146019271:146019332,	146017137	146017263	146017264	146017264	Splice_Site	C	A	e1-1
UCEC	TCGA-D1-A16X-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257528	158257528	Splice_Site	G	T	e11-1
UCEC	TCGA-AP-A051-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257900	158257900	Splice_Site	G	A	e11+1
UCEC	TCGA-D1-A176-01	DDX60L	ENST00000505863.1	chr4	169337832:169337948:169341411:169341531:169342910:169343060,	169341412	169341531	169341410	169341410	Splice_Site	A	G	e17+2
UCEC	TCGA-BS-A0UF-01	DDX60L	ENST00000505890.1,ENST00000504793.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169341411:169341531:169342910:169343060:169343674:169343739,	169342911	169343060	169343062	169343062	Splice_Site	T	C	e16-2
UCEC	TCGA-AP-A051-01	AGA	ENST00000264595.2,ENST00000506853.1	chr4	178359898:178360011:178360729:178360842:178361426:178361580,	178360730	178360842	178360729	178360729	Splice_Site	C	T	e3+1
UCEC	TCGA-AP-A051-01	TRAPPC11	ENST00000357207.4,ENST00000512476.1,ENST00000334690.6,ENST00000505676.1	chr4	184615756:184615876:184618655:184618721:184618831:184618988,	184618656	184618721	184618723	184618723	Splice_Site	T	C	e23+2
UCEC	TCGA-B5-A11E-01	LRP2BP	ENST00000505916.1	chr4	186298062:186298172:186299234:186299361:186315932:186315993,	186299235	186299361	186299233	186299233	Splice_Site	A	G	e1+2
UCEC	TCGA-D1-A103-01	LRP2BP	ENST00000505916.1	chr4	186298062:186298172:186299234:186299361:186315932:186315993,	186299235	186299361	186299362	186299362	Splice_Site	C	T	e1-1
UCEC	TCGA-AP-A056-01	UFSP2	ENST00000511485.1,ENST00000514247.1,ENST00000510755.1,ENST00000264689.6	chr4	186336437:186336501:186336863:186337021:186339594:186339661,	186336864	186337021	186337022	186337022	Splice_Site	C	T	e5-1
UCEC	TCGA-B5-A0JY-01	C4orf47	ENST00000511138.1,ENST00000511581.1,ENST00000378850.4	chr4	186350543:186350665:186353135:186353355:186357199:186357285,	186353136	186353355	186353356	186353356	Splice_Site	G	A	e2+1
UCEC	TCGA-A5-A0GB-01	MARCH6	ENST00000511802.1,ENST00000507863.1,ENST00000274140.5,ENST00000510872.1	chr5	10378870:10378944:10381911:10382055:10387105:10387178,	10381912	10382055	10382056	10382056	Splice_Site	G	A	e4+1
UCEC	TCGA-D1-A103-01	TTC23L	ENST00000502674.1,ENST00000505624.1,ENST00000514080.1,ENST00000506758.1	chr5	34845591:34845778:34850289:34850413:34863002:34863115,	34850290	34850413	34850289	34850289	Splice_Site	G	A	e3-1
UCEC	TCGA-BS-A0UV-01	BRIX1	ENST00000336767.5,ENST00000506023.1	chr5	34923237:34923339:34924951:34925080:34925330:34925450,	34924952	34925080	34924951	34924951	Splice_Site	G	T	e9-1
UCEC	TCGA-AP-A054-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36608591:36608706:36629551:36629689:36671130:36671286,	36629552	36629689	36629691	36629691	Splice_Site	T	C	e2+2
UCEC	TCGA-D1-A17Q-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	37024686:37024821:37026330:37026429:37027460:37027514,	37026331	37026429	37026330	37026330	Splice_Site	G	T	e30-1
UCEC	TCGA-B5-A11E-01	OSMR	ENST00000274276.3	chr5	38925305:38925473:38931984:38932066:38932564:38932637,	38931985	38932066	38931984	38931984	Splice_Site	G	A	e15-1
UCEC	TCGA-B5-A11E-01	C7	ENST00000313164.9	chr5	40937653:40937792:40945299:40945470:40947703:40947947,	40945300	40945470	40945299	40945299	Splice_Site	G	T	e7-1
UCEC	TCGA-AP-A051-01	ITGA2	ENST00000510722.1,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52344192:52344307:52344472:52344600:52347240:52347389,	52344473	52344600	52344601	52344601	Splice_Site	G	T	e6+1
UCEC	TCGA-D1-A17M-01	PIK3R1	ENST00000521381.1,ENST00000520675.1,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1	chr5	67569217:67569310:67569766:67569841:67575429:67575561,	67569767	67569841	67569842	67569845	Splice_Site	GTGA	-	e3+1
UCEC	TCGA-D1-A163-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591246	Splice_Site	A	G	e13-2
UCEC	TCGA-D1-A0ZS-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591246	Splice_Site	A	G	e13-2
UCEC	TCGA-AX-A0J1-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70754405:70754682:70757643:70757753:70759884:70759944,	70757644	70757753	70757754	70757754	Splice_Site	G	A	e3+1
UCEC	TCGA-D1-A163-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73932188	73932188	Splice_Site	C	T	e1-1
UCEC	TCGA-BS-A0TC-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000514350.1,ENST00000505766.1	chr5	75902003:75902128:75906844:75907008:75923234:75923321,	75906845	75907008	75907009	75907009	Splice_Site	G	T	e13+1
UCEC	TCGA-BS-A0UF-01	AGGF1	ENST00000312916.7	chr5	76351338:76351421:76355440:76355568:76357527:76357627,	76355441	76355568	76355440	76355440	Splice_Site	G	T	e12-1
UCEC	TCGA-AP-A0LM-01	WDR41	ENST00000513917.1	chr5	76758948:76759051:76785281:76785397:76787994:76788020,76760585:76760634:76785281:76785397:76787994:76788020,76760585:76760634:76785281:76785397:76795151:76795461,	76785282	76785397	76785398	76785398	Splice_Site	C	A	e2-1
UCEC	TCGA-B5-A11G-01	FAM172A	ENST00000502503.1	chr5	93388830:93388932:93410350:93410474:93447215:93447340,	93410351	93410474	93410349	93410349	Splice_Site	A	G	e1+2
UCEC	TCGA-BS-A0U8-01	MCTP1	ENST00000515393.1,ENST00000514040.1,ENST00000508509.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8	chr5	94046522:94046632:94050481:94050591:94114814:94114868,	94050482	94050591	94050481	94050483	Splice_Site	CTT	-	e21-1
UCEC	TCGA-AP-A051-01	MCTP1	ENST00000506568.4	chr5	94253600:94253678:94259666:94259726:94267657:94267696,94248562:94248681:94259666:94259726:94275787:94275880,	94259667	94259726	94259728	94259728	Splice_Site	T	C	e7-2
UCEC	TCGA-D1-A103-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96232106:96232208:96232435:96232567:96235824:96235893,	96232436	96232567	96232435	96232435	Splice_Site	G	A	e8-1
UCEC	TCGA-AX-A0J0-01	SNCAIP	ENST00000542191.1,ENST00000512385.1,ENST00000508017.1,ENST00000379538.3,ENST00000515215.2,ENST00000510658.1	chr5	121726829:121726886:121739487:121739560:121767663:121767777,	121739488	121739560	121739487	121739487	Splice_Site	G	A	e2-1
UCEC	TCGA-BS-A0UM-01	HINT1	ENST00000513345.1	chr5	130495296:130495304:130498264:130498369:130500752:130500913,	130498265	130498369	130498370	130498370	Splice_Site	C	T	e2-1
UCEC	TCGA-BS-A0TC-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4	chr5	134106592:134106689:134109385:134109551:134113263:134113415,	134109386	134109551	134109385	134109385	Splice_Site	G	T	e5-1
UCEC	TCGA-D1-A101-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000305126.8,ENST00000442011.2	chr5	135369451:135369550:135379746:135379811:135382023:135382129,	135379747	135379811	135379745	135379746	Splice_Site	AG	-	e3-1
UCEC	TCGA-D1-A103-01	HSPA9	ENST00000506477.1,ENST00000504902.1	chr5	137909465:137909539:137909756:137909815:137910926:137911029,	137909757	137909815	137909756	137909756	Splice_Site	C	T	e2+1
UCEC	TCGA-D1-A103-01	HSPA9	ENST00000507097.1,ENST00000507115.1	chr5	137909465:137909539:137909756:137909858:137910926:137911029,	137909757	137909858	137909756	137909756	Splice_Site	C	T	e2+1
UCEC	TCGA-BS-A0TC-01	CTNNA1	ENST00000355078.5,ENST00000521724.1	chr5	138089134:138089199:138117611:138117718:138145726:138145778,	138117612	138117718	138117611	138117611	Splice_Site	G	T	e1-1
UCEC	TCGA-BG-A0M4-01	SLC4A9	ENST00000507527.1,ENST00000506545.1,ENST00000432095.2,ENST00000230993.6,ENST00000506757.2	chr5	139743345:139743487:139743638:139743772:139743947:139744210,	139743639	139743772	139743774	139743774	Splice_Site	T	C	e10+2
UCEC	TCGA-BS-A0UF-01	HDAC3	ENST00000459727.1	chr5	141004774:141004932:141005251:141005331:141005579:141005637,141004774:141004932:141005251:141005331:141005760:141005850,	141005252	141005331	141005332	141005332	Splice_Site	C	A	e13-1
UCEC	TCGA-B5-A11R-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145609279:145609473:145610219:145610480:145613012:145613306,	145610220	145610480	145610219	145610219	Splice_Site	G	A	e6-1
UCEC	TCGA-AX-A0J1-01	CSF1R	ENST00000515068.1,ENST00000504875.1,ENST00000286301.3	chr5	149435588:149435700:149435781:149435904:149436849:149436947,	149435782	149435904	149435906	149435906	Splice_Site	T	C	e17-2
UCEC	TCGA-AP-A059-01	FAT2	ENST00000261800.5	chr5	150932737:150932948:150933922:150934234:150935904:150935963,	150933923	150934234	150933922	150933922	Splice_Site	C	T	e4+1
UCEC	TCGA-AP-A056-01	G3BP1	ENST00000520177.1,ENST00000522367.1,ENST00000519832.1,ENST00000523519.1,ENST00000394123.3,ENST00000522761.1,ENST00000356245.3,ENST00000543466.1,ENST00000520006.1,ENST00000520578.1	chr5	151166163:151166276:151169883:151169965:151170449:151170587,	151169884	151169965	151169966	151169966	Splice_Site	G	T	e2+1
UCEC	TCGA-AP-A056-01	DOCK2	ENST00000256935.8,ENST00000524185.1	chr5	169111199:169111354:169116255:169116337:169122806:169122942,	169116256	169116337	169116255	169116255	Splice_Site	G	A	e9-1
UCEC	TCGA-BS-A0TA-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176304894:176305128:176305244:176305394:176305475:176305640,	176305245	176305394	176305244	176305244	Splice_Site	G	A	e12-1
UCEC	TCGA-D1-A16E-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176305244:176305394:176305475:176305640:176306310:176306489,	176305476	176305640	176305474	176305474	Splice_Site	A	G	e13-2
UCEC	TCGA-AX-A0J0-01	ZNF346	ENST00000513587.1	chr5	176468126:176468230:176468778:176468871:176471389:176471534,176468126:176468230:176468778:176468871:176477751:176477893,176468126:176468230:176468778:176468871:176489058:176489152,	176468779	176468871	176468873	176468873	Splice_Site	T	C	e3+2
UCEC	TCGA-AP-A059-01	FGFR4	ENST00000292410.3,ENST00000292408.4,ENST00000503708.1,ENST00000430285.1,ENST00000393648.2,ENST00000502906.1,ENST00000509511.1,ENST00000393637.1	chr5	176517651:176517654:176517745:176517826:176517938:176518105,	176517746	176517826	176517828	176517828	Splice_Site	T	G	e3+2
UCEC	TCGA-AP-A059-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000513169.1,ENST00000427908.2	chr5	176737426:176737541:176737668:176737698:176738379:176738485,	176737669	176737698	176737699	176737699	Splice_Site	C	T	e3-1
UCEC	TCGA-D1-A17H-01	PDLIM7	ENST00000493815.1,ENST00000355841.2,ENST00000359895.2	chr5	176916393:176916628:176917870:176917907:176918010:176918147,176916771:176916833:176917870:176917907:176918010:176918147,	176917871	176917907	176917869	176917869	Splice_Site	A	G	e6+2
UCEC	TCGA-D1-A176-01	HNRNPH1	ENST00000511300.2,ENST00000510678.1,ENST00000523449.1,ENST00000510411.1,ENST00000514332.1,ENST00000502904.1,ENST00000356731.5,ENST00000442819.2,ENST00000393432.4,ENST00000519033.1,ENST00000502632.1	chr5	179041890:179041960:179042546:179042596:179043126:179043181,	179042547	179042596	179042546	179042546	Splice_Site	C	T	e12+1
UCEC	TCGA-AX-A0J0-01	CANX	ENST00000508787.1	chr5	179136919:179137066:179142899:179143001:179143105:179143202,	179142900	179143001	179142899	179142899	Splice_Site	G	T	e4-1
UCEC	TCGA-B5-A11H-01	BTNL8	ENST00000400707.3	chr5	180326273:180326359:180329345:180329396:180338338:180338614,	180329346	180329396	180329343	180329344	Splice_Site	-	A	e1-2
UCEC	TCGA-D1-A15V-01	DUSP22	ENST00000603290.1	chr6	304627:304661:335113:335163:345853:345912,311879:311962:335113:335163:345853:345912,319951:320364:335113:335163:345853:345912,	335114	335163	335112	335112	Splice_Site	A	T	e4-2
UCEC	TCGA-AP-A059-01	ALDH5A1	ENST00000546278.1,ENST00000491546.1,ENST00000357578.3	chr6	24505096:24505213:24515394:24515538:24520628:24520772,	24515395	24515538	24515539	24515539	Splice_Site	G	A	e6+1
UCEC	TCGA-D1-A17R-01	SLC17A1	ENST00000476801.1,ENST00000244527.4	chr6	25813058:25813220:25813322:25813441:25819295:25819382,	25813323	25813441	25813442	25813442	Splice_Site	C	A	e6-1
UCEC	TCGA-AP-A051-01	SLC17A3	ENST00000509714.1,ENST00000308453.5,ENST00000397060.4,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25851000:25851105:25855371:25855458:25861851:25861939,	25855372	25855458	25855459	25855459	Splice_Site	C	A	e5-1
UCEC	TCGA-AP-A051-01	FLOT1	ENST00000456573.2,ENST00000376389.3	chr6	30698458:30698504:30698695:30698877:30707934:30708087,	30698696	30698877	30698878	30698878	Splice_Site	C	A	e8-1
UCEC	TCGA-D1-A16F-01	HLA-DRB5	ENST00000374975.3	chr6	32485119:32485529:32485830:32485854:32486332:32486443,	32485831	32485854	32485856	32485856	Splice_Site	T	C	e5-2
UCEC	TCGA-AP-A056-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32816428:32816617:32816766:32816895:32818096:32818294,	32816767	32816895	32816896	32816896	Splice_Site	C	A	e6-1
UCEC	TCGA-AP-A0LT-01	SNRPC	ENST00000374018.1,ENST00000474635.1,ENST00000374017.3,ENST00000244520.5	chr6	34730371:34730480:34735684:34735774:34738067:34738172,	34735685	34735774	34735775	34735775	Splice_Site	G	A	e4+1
UCEC	TCGA-B5-A0K0-01	ZFAND3	ENST00000287218.4	chr6	38029386:38029551:38084347:38084515:38120010:38120620,38050167:38050233:38084347:38084515:38120010:38120620,	38084348	38084515	38084517	38084517	Splice_Site	T	G	e5+2
UCEC	TCGA-AX-A05Z-01	NFYA	ENST00000341376.6	chr6	41046782:41046903:41048549:41048636:41051784:41051931,	41048550	41048636	41048549	41048549	Splice_Site	G	T	e2-1
UCEC	TCGA-B5-A11I-01	FOXP4	ENST00000373060.1,ENST00000307972.4,ENST00000373057.3	chr6	41557508:41557592:41557700:41557908:41558008:41558085,	41557701	41557908	41557909	41557909	Splice_Site	G	A	e10+1
UCEC	TCGA-B5-A11I-01	FOXP4	ENST00000409208.1,ENST00000373063.3	chr6	41557508:41557592:41557736:41557908:41558008:41558085,	41557737	41557908	41557909	41557909	Splice_Site	G	A	e10+1
UCEC	TCGA-AP-A059-01	PGC	ENST00000373025.3,ENST00000425343.2	chr6	41711008:41711127:41712134:41712252:41712395:41712544,	41712135	41712252	41712253	41712253	Splice_Site	C	A	e3-1
UCEC	TCGA-D1-A17Q-01	TRERF1	ENST00000340840.2,ENST00000354325.2	chr6	42268375:42268487:42330684:42330817:42418914:42418999,	42330685	42330817	42330684	42330684	Splice_Site	C	T	e0+1
UCEC	TCGA-A5-A0GB-01	VEGFA	ENST00000523873.1,ENST00000372055.4	chr6	43746625:43746655:43748468:43748591:43749692:43749789,	43748469	43748591	43748592	43748592	Splice_Site	G	A	e6+1
UCEC	TCGA-D1-A16R-01	HMGCLL1	ENST00000308161.4	chr6	55364033:55364097:55378845:55378994:55406526:55406634,	55378846	55378994	55378995	55378995	Splice_Site	C	G	e6-1
UCEC	TCGA-B5-A11E-01	BEND6	ENST00000370746.3	chr6	56857175:56857353:56879930:56880151:56882004:56882197,	56879931	56880151	56880153	56880153	Splice_Site	T	G	e3+2
UCEC	TCGA-B5-A11E-01	PHF3	ENST00000509330.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64346015:64346055:64389900:64390062:64394029:64394146,64346015:64346055:64389900:64390062:64401626:64401933,64356523:64356700:64389900:64390062:64394029:64394146,	64389901	64390062	64390064	64390064	Splice_Site	T	C	e2+2
UCEC	TCGA-D1-A16X-01	KCNQ5	ENST00000342056.2	chr6	73830279:73830300:73834208:73834235:73843143:73843364,73830205:73830300:73834208:73834235:73839515:73839572,	73834209	73834235	73834236	73834236	Splice_Site	G	A	e9+1
UCEC	TCGA-D1-A17Q-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75829065:75829189:75831017:75831157:75833045:75833120,	75831018	75831157	75831017	75831017	Splice_Site	C	T	e43+1
UCEC	TCGA-AX-A0J0-01	SNAP91	ENST00000439399.2,ENST00000369694.2,ENST00000521616.1,ENST00000428679.2,ENST00000521485.1,ENST00000521931.1,ENST00000195649.6,ENST00000521743.1	chr6	84300929:84301013:84302173:84302257:84302664:84302701,	84302174	84302257	84302258	84302258	Splice_Site	C	T	e20-1
UCEC	TCGA-AP-A051-01	QRSL1	ENST00000369044.1,ENST00000369046.4	chr6	107096899:107097076:107100083:107100259:107100341:107100457,	107100084	107100259	107100261	107100261	Splice_Site	T	C	e6+2
UCEC	TCGA-AP-A051-01	TRMT11	ENST00000489934.1,ENST00000334379.5,ENST00000479748.1,ENST00000368332.3,ENST00000444121.1,ENST00000450358.1,ENST00000473273.1,ENST00000446681.1,ENST00000468097.1	chr6	126314946:126314968:126317112:126317186:126319198:126319244,	126317113	126317186	126317187	126317187	Splice_Site	G	A	e3+1
UCEC	TCGA-D1-A16B-01	ARG1	ENST00000275196.5,ENST00000356962.2,ENST00000368087.3	chr6	131900252:131900425:131902358:131902518:131903760:131903855,	131902359	131902518	131902519	131902519	Splice_Site	G	T	e4+1
UCEC	TCGA-AP-A0LM-01	EYA4	ENST00000421413.2,ENST00000355286.6,ENST00000525849.1	chr6	133767767:133767892:133777693:133777786:133782251:133782263,	133777694	133777786	133777693	133777693	Splice_Site	G	C	e5-1
UCEC	TCGA-BS-A0UF-01	PHACTR2	ENST00000451827.2	chr6	144033152:144033320:144070121:144070202:144074890:144075049,144033152:144033320:144070121:144070202:144086397:144086611,	144070122	144070202	144070121	144070121	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UV-01	UTRN	ENST00000367545.3	chr6	144612964:144613043:144724258:144724320:144743013:144743106,	144724259	144724320	144724321	144724321	Splice_Site	G	A	e2+1
UCEC	TCGA-AP-A05N-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152545628:152545799:152546855:152547011:152551681:152551837,	152546856	152547011	152546854	152546854	Splice_Site	A	G	e114+2
UCEC	TCGA-B5-A0JY-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155143409:155143543:155145367:155145512:155148305:155148374,	155145368	155145512	155145367	155145367	Splice_Site	G	T	e17-1
UCEC	TCGA-BS-A0UV-01	SLC22A3	ENST00000275300.2,ENST00000392145.1	chr6	160831760:160831878:160857811:160857909:160858028:160858243,	160857812	160857909	160857811	160857811	Splice_Site	G	T	e6-1
UCEC	TCGA-AX-A0J0-01	SLC22A3	ENST00000275300.2,ENST00000392145.1	chr6	160831760:160831878:160857811:160857909:160858028:160858243,	160857812	160857909	160857811	160857811	Splice_Site	G	T	e6-1
UCEC	TCGA-B5-A11E-01	RPS6KA2	ENST00000366863.2	chr6	166944719:166944801:166952155:166952272:167184350:167184401,166944719:166944801:166952155:166952272:167040408:167040725,	166952156	166952272	166952273	166952273	Splice_Site	C	A	e3-1
UCEC	TCGA-D1-A177-01	WDR27	ENST00000546525.1,ENST00000479310.1	chr6	170036466:170036600:170038634:170038756:170043792:170043882,170034523:170034621:170038634:170038756:170043792:170043882,	170038635	170038756	170038633	170038633	Splice_Site	A	G	e17+2
UCEC	TCGA-AP-A05N-01	SNX8	ENST00000457286.1,ENST00000435060.1,ENST00000479689.1,ENST00000435336.1,ENST00000222990.3	chr7	2304074:2304093:2309193:2309274:2311484:2311531,	2309194	2309274	2309275	2309275	Splice_Site	C	A	e5-1
UCEC	TCGA-B5-A11E-01	LFNG	ENST00000359574.3,ENST00000222725.5	chr7	2559495:2559927:2564328:2564377:2564852:2564952,	2564329	2564377	2564327	2564327	Splice_Site	A	G	e2-2
UCEC	TCGA-BS-A0UF-01	AGR2	ENST00000489523.1,ENST00000401412.1,ENST00000412973.1,ENST00000419304.2,ENST00000419572.2	chr7	16839367:16839441:16840774:16840827:16840943:16841007,	16840775	16840827	16840828	16840828	Splice_Site	C	A	e3-1
UCEC	TCGA-D1-A17Q-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20784854:20785061:20792982:20793129:20795049:20795247,	20792983	20793129	20792982	20792982	Splice_Site	G	T	e15-1
UCEC	TCGA-AX-A0J1-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21600708:21600788:21603803:21604015:21609686:21609917,	21603804	21604015	21604017	21604017	Splice_Site	T	C	e6+2
UCEC	TCGA-B5-A0JY-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21628129:21628254:21628825:21629021:21630535:21630640,	21628826	21629021	21628825	21628825	Splice_Site	G	T	e12-1
UCEC	TCGA-B5-A11Y-01	CDCA7L	ENST00000356195.5,ENST00000435031.1,ENST00000406877.3	chr7	21948038:21948125:21951234:21951372:21956371:21956512,	21951235	21951372	21951373	21951373	Splice_Site	C	T	e3-1
UCEC	TCGA-BS-A0UV-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232114:26232197:26232870:26232993:26233194:26233314,	26232871	26232993	26232994	26232994	Splice_Site	C	T	e10-1
UCEC	TCGA-A5-A0GB-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232114:26232197:26232870:26232993:26233194:26233314,	26232871	26232993	26232995	26232995	Splice_Site	T	C	e10-2
UCEC	TCGA-B5-A11E-01	PLEKHA8	ENST00000396259.1,ENST00000396257.2,ENST00000449726.1,ENST00000258679.7,ENST00000440706.2	chr7	30088839:30088998:30090049:30090090:30092324:30092482,	30090050	30090090	30090049	30090049	Splice_Site	G	T	e6-1
UCEC	TCGA-D1-A103-01	HERPUD2	ENST00000311350.3	chr7	35712810:35712888:35733793:35734237:35734410:35734633,	35733794	35734237	35734238	35734238	Splice_Site	C	T	e1-1
UCEC	TCGA-A5-A0VP-01	EEPD1	ENST00000242108.4,ENST00000534978.1	chr7	36193829:36194811:36278593:36278645:36320723:36320834,	36278594	36278645	36278593	36278593	Splice_Site	G	A	e2-1
UCEC	TCGA-BS-A0UF-01	ZMIZ2	ENST00000309315.4,ENST00000478045.1,ENST00000433667.1,ENST00000413916.1,ENST00000441627.1,ENST00000463056.1,ENST00000480964.1,ENST00000265346.7	chr7	44801406:44801504:44802479:44802585:44802854:44803012,	44802480	44802585	44802587	44802587	Splice_Site	T	C	e11+2
UCEC	TCGA-BS-A0U8-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72397339:72397501:72398922:72399003:72400477:72400649,	72398923	72399003	72398921	72398921	Splice_Site	A	G	e3-2
UCEC	TCGA-B5-A11E-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72891197:72892899:72903523:72903721:72907129:72907251,	72903524	72903721	72903722	72903722	Splice_Site	C	T	e6-1
UCEC	TCGA-B5-A0JY-01	NCF1	ENST00000398421.2,ENST00000455062.1	chr7	74195125:74195181:74197281:74197975:74199527:74199607,	74197282	74197975	74197281	74197281	Splice_Site	G	T	e6-1
UCEC	TCGA-AP-A059-01	SEMA3D	ENST00000444867.1	chr7	84710832:84710895:84727120:84727281:84751056:84751107,	84727121	84727281	84727282	84727282	Splice_Site	C	A	e2-1
UCEC	TCGA-AP-A0LM-01	RUNDC3B	ENST00000394654.3,ENST00000338056.3	chr7	87407113:87407271:87436687:87436834:87445455:87445577,	87436688	87436834	87436836	87436836	Splice_Site	T	C	e10+2
UCEC	TCGA-B5-A121-01	CDK14	ENST00000406263.1,ENST00000380050.3,ENST00000436577.2,ENST00000265741.3	chr7	90741856:90741996:90747379:90747523:90836479:90836677,	90747380	90747523	90747378	90747378	Splice_Site	A	G	e13-2
UCEC	TCGA-A5-A0VP-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000463118.1,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91727467:91727528:91729000:91729183:91730169:91730370,	91729001	91729183	91729000	91729000	Splice_Site	G	A	e44-1
UCEC	TCGA-AP-A059-01	PON2	ENST00000491069.1	chr7	95041635:95041789:95045483:95045609:95053826:95053897,	95045484	95045609	95045610	95045610	Splice_Site	C	T	e3-1
UCEC	TCGA-AP-A059-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000493290.1	chr7	95041635:95041789:95045553:95045609:95053826:95053897,	95045554	95045609	95045610	95045610	Splice_Site	C	T	e3-1
UCEC	TCGA-D1-A103-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97820925	97820925	Splice_Site	G	T	e11-1
UCEC	TCGA-D1-A17R-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000463648.1	chr7	97870162:97870263:97870381:97870556:97872778:97872886,	97870382	97870556	97870558	97870558	Splice_Site	T	C	e5-2
UCEC	TCGA-D1-A17D-01	ARPC1A	ENST00000262942.5,ENST00000432786.1,ENST00000432884.2,ENST00000441989.2	chr7	98946515:98946582:98951531:98951744:98955962:98956026,	98951532	98951744	98951746	98951746	Splice_Site	T	C	e5+2
UCEC	TCGA-AX-A0J0-01	TRIM4	ENST00000355947.2,ENST00000354241.5,ENST00000447480.1,ENST00000349062.2	chr7	99500840:99500938:99501198:99501221:99506204:99506435,	99501199	99501221	99501222	99501222	Splice_Site	C	A	e5-1
UCEC	TCGA-D1-A177-01	COPS6	ENST00000426712.1,ENST00000303904.3,ENST00000418625.1	chr7	99688059:99688110:99688214:99688277:99688524:99688572,	99688215	99688277	99688214	99688214	Splice_Site	G	A	e5-1
UCEC	TCGA-AP-A051-01	FBXO24	ENST00000465843.1,ENST00000474649.1,ENST00000241071.6,ENST00000360609.2	chr7	100184248:100184287:100187599:100187698:100187796:100187938,	100187600	100187698	100187700	100187700	Splice_Site	T	C	e2+2
UCEC	TCGA-AP-A054-01	FBXO24	ENST00000474649.1,ENST00000241071.6,ENST00000466053.1,ENST00000468962.1,ENST00000427939.2,ENST00000498195.1	chr7	100187599:100187698:100187796:100187980:100189289:100189469,	100187797	100187980	100187982	100187982	Splice_Site	T	C	e3+2
UCEC	TCGA-AP-A059-01	PNPLA8	ENST00000257694.8,ENST00000422087.1,ENST00000453085.1,ENST00000453144.1,ENST00000436062.1	chr7	108119627:108119823:108128202:108128397:108131853:108131911,	108128203	108128397	108128202	108128202	Splice_Site	C	A	e7+1
UCEC	TCGA-D1-A16J-01	RBM28	ENST00000223073.2,ENST00000415472.2	chr7	127964660:127964747:127965870:127965944:127970871:127970981,	127965871	127965944	127965868	127965869	Splice_Site	-	A	e11+2
UCEC	TCGA-AP-A051-01	KLHDC10	ENST00000335420.5	chr7	129761893:129762042:129764290:129764375:129765704:129765771,	129764291	129764375	129764376	129764376	Splice_Site	G	T	e6+1
UCEC	TCGA-D1-A17Q-01	KLHDC10	ENST00000335420.5	chr7	129767243:129767291:129769276:129769416:129770376:129775560,	129769277	129769416	129769276	129769276	Splice_Site	G	T	e9-1
UCEC	TCGA-AP-A051-01	TRPV6	ENST00000359396.3	chr7	142574576:142574590:142574894:142575032:142575403:142575526,	142574895	142575032	142575033	142575033	Splice_Site	C	T	e4-1
UCEC	TCGA-AX-A0J0-01	RARRES2	ENST00000466675.1,ENST00000482669.1,ENST00000223271.3	chr7	150035446:150035528:150036074:150036170:150037188:150037293,150035713:150035830:150036074:150036170:150037188:150037293,	150036075	150036170	150036171	150036171	Splice_Site	C	A	e3-1
UCEC	TCGA-BS-A0UF-01	DNAJB6	ENST00000486083.2,ENST00000262177.4,ENST00000453383.1,ENST00000429029.2,ENST00000412557.1,ENST00000488001.1,ENST00000459889.1,ENST00000437030.1,ENST00000441291.1,ENST00000417758.1,ENST00000441561.1,ENST00000443280.1	chr7	157151240:157151331:157155854:157155964:157159195:157159219,	157155855	157155964	157155854	157155854	Splice_Site	G	T	e2-1
UCEC	TCGA-BS-A0UV-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157387929:157388007:157396693:157396767:157414053:157414201,	157396694	157396767	157396768	157396768	Splice_Site	C	T	e16-1
UCEC	TCGA-AP-A051-01	NCAPG2	ENST00000449727.2,ENST00000409423.1,ENST00000275830.10,ENST00000409339.3,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3	chr7	158464205:158464358:158468168:158468348:158472651:158472777,	158468169	158468348	158468349	158468349	Splice_Site	C	A	e11-1
UCEC	TCGA-B5-A11G-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19277893:19278029:19297340:19297442:19315936:19316153,	19297341	19297442	19297444	19297444	Splice_Site	T	C	e3-2
UCEC	TCGA-D1-A103-01	INTS10	ENST00000397977.3	chr8	19681383:19681492:19682313:19682483:19683936:19683999,19681405:19681555:19682313:19682483:19683936:19683999,	19682314	19682483	19682313	19682313	Splice_Site	G	T	e8-1
UCEC	TCGA-AP-A0LM-01	NPM2	ENST00000522813.1,ENST00000520180.1,ENST00000381530.5,ENST00000289820.6,ENST00000518119.1,ENST00000521157.1,ENST00000520125.1,ENST00000397940.1	chr8	21882946:21883032:21883157:21883283:21890640:21890667,	21883158	21883283	21883284	21883284	Splice_Site	G	A	e3+1
UCEC	TCGA-AX-A05Z-01	SCARA3	ENST00000301904.3	chr8	27514298:27514397:27516012:27517056:27528416:27530537,	27516013	27517056	27516012	27516012	Splice_Site	G	T	e5-1
UCEC	TCGA-B5-A11E-01	STAR	ENST00000276449.4,ENST00000522050.1	chr8	38003880:38003965:38005717:38005845:38006158:38006272,	38005718	38005845	38005846	38005846	Splice_Site	C	T	e3-1
UCEC	TCGA-AP-A0LM-01	PLEKHA2	ENST00000388745.4,ENST00000518571.1,ENST00000521746.1,ENST00000420274.1	chr8	38801306:38801355:38803641:38803739:38808367:38808508,	38803642	38803739	38803740	38803740	Splice_Site	G	A	e4+1
UCEC	TCGA-B5-A11E-01	PCMTD1	ENST00000522514.1	chr8	52758220:52758323:52773404:52773806:52811489:52811530,	52773405	52773806	52773807	52773807	Splice_Site	C	A	e1-1
UCEC	TCGA-AP-A056-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54682213:54682303:54684548:54684727:54708206:54708321,	54684549	54684727	54684728	54684728	Splice_Site	C	A	e9-1
UCEC	TCGA-D1-A16N-01	CHCHD7	ENST00000523975.1	chr8	57124368:57124396:57127156:57127226:57128991:57129065,57125320:57125448:57127156:57127226:57128991:57129065,	57127157	57127226	57127228	57127228	Splice_Site	T	C	e2+2
UCEC	TCGA-AP-A054-01	ADHFE1	ENST00000419955.1,ENST00000431959.1	chr8	67352396:67352434:67355032:67355079:67356601:67356655,67344747:67344810:67355032:67355079:67356601:67356655,	67355033	67355079	67355031	67355031	Splice_Site	A	C	e3-2
UCEC	TCGA-BS-A0UF-01	CSPP1	ENST00000262210.5,ENST00000519163.1	chr8	68044185:68044315:68049690:68049838:68062017:68062170,	68049691	68049838	68049689	68049689	Splice_Site	A	G	e17-2
UCEC	TCGA-A5-A0G5-01	LACTB2	ENST00000276590.4	chr8	71569990:71570117:71573968:71574132:71581233:71581392,	71573969	71574132	71573967	71573967	Splice_Site	A	C	e2+2
UCEC	TCGA-AP-A051-01	HNF4G	ENST00000396419.1	chr8	76456049:76456214:76459821:76459916:76463622:76463729,76402323:76402443:76459821:76459916:76463622:76463729,	76459822	76459916	76459821	76459821	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UV-01	IMPA1	ENST00000449740.2	chr8	82593732:82593819:82597997:82598198:82598486:82598517,	82597998	82598198	82598199	82598199	Splice_Site	C	A	e1-1
UCEC	TCGA-AP-A059-01	RALYL	ENST00000518566.1,ENST00000522455.1,ENST00000521695.1,ENST00000517638.1,ENST00000523850.1,ENST00000521268.1	chr8	85785518:85785632:85799838:85800011:85833128:85833717,	85799839	85800011	85799838	85799838	Splice_Site	G	T	e8-1
UCEC	TCGA-BS-A0UF-01	CPNE3	ENST00000523072.1,ENST00000521271.1,ENST00000198765.4	chr8	87543382:87543457:87544736:87544808:87549790:87549874,	87544737	87544808	87544736	87544736	Splice_Site	G	T	e4-1
UCEC	TCGA-AP-A059-01	INTS8	ENST00000523731.1,ENST00000343161.4,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1	chr8	95848751:95848859:95850690:95850846:95853718:95853819,	95850691	95850846	95850847	95850847	Splice_Site	G	A	e8+1
UCEC	TCGA-AP-A059-01	INTS8	ENST00000523206.1,ENST00000524333.1	chr8	95848751:95848859:95850721:95850846:95853718:95853819,	95850722	95850846	95850847	95850847	Splice_Site	G	A	e8+1
UCEC	TCGA-D1-A103-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101608866:101609070:101612576:101612669:101620721:101620791,	101612577	101612669	101612575	101612575	Splice_Site	A	G	e9+2
UCEC	TCGA-B5-A11G-01	ATP6V1C1	ENST00000521514.1	chr8	104053025:104053196:104054567:104054635:104061097:104061183,104033329:104033453:104054567:104054635:104061097:104061183,	104054568	104054635	104054637	104054637	Splice_Site	T	C	e2+2
UCEC	TCGA-D1-A17Q-01	TMEM71	ENST00000522780.1	chr8	133726399:133726461:133734285:133734361:133740043:133740229,133699707:133699901:133734285:133734361:133740043:133740232,	133734286	133734361	133734363	133734363	Splice_Site	T	G	e6-2
UCEC	TCGA-BS-A0UF-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133975238:133975319:133978804:133978942:133980038:133980142,	133978805	133978942	133978943	133978943	Splice_Site	G	A	e30+1
UCEC	TCGA-AP-A051-01	KHDRBS3	ENST00000355849.5,ENST00000524199.1,ENST00000522079.1	chr8	136569698:136569830:136594120:136594316:136619197:136619270,	136594121	136594316	136594318	136594318	Splice_Site	T	C	e6+2
UCEC	TCGA-AP-A051-01	SHARPIN	ENST00000398712.2,ENST00000359551.6	chr8	145154831:145154972:145157953:145158128:145158455:145158659,	145157954	145158128	145157953	145157953	Splice_Site	C	T	e2+1
UCEC	TCGA-AP-A0LM-01	KANK1	ENST00000382289.2,ENST00000382303.1,ENST00000382286.1,ENST00000382293.3,ENST00000382297.2,ENST00000489369.1	chr9	740791:740934:742204:742405:744490:744589,	742205	742405	742407	742407	Splice_Site	T	C	e9+2
UCEC	TCGA-AX-A05Z-01	CNTLN	ENST00000380647.3	chr9	17273730:17273864:17298187:17298350:17309055:17309250,	17298188	17298350	17298351	17298351	Splice_Site	G	T	e7+1
UCEC	TCGA-AP-A0LG-01	ADAMTSL1	ENST00000380566.4,ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18635940:18636015:18639251:18639409:18657636:18657748,	18639252	18639409	18639251	18639251	Splice_Site	G	T	e7-1
UCEC	TCGA-AP-A0LM-01	IFT74	ENST00000443698.1,ENST00000433700.1,ENST00000380062.5	chr9	27047271:27047369:27048145:27048272:27055606:27055770,	27048146	27048272	27048145	27048145	Splice_Site	G	T	e15-1
UCEC	TCGA-BS-A0UF-01	SPAG8	ENST00000463889.1	chr9	35808127:35808303:35810435:35810550:35810633:35810679,	35810436	35810550	35810551	35810551	Splice_Site	C	A	e5-1
UCEC	TCGA-D1-A17Q-01	MELK	ENST00000487398.1	chr9	36572907:36573004:36581640:36581736:36583623:36583709,36572907:36573004:36581640:36581736:36589532:36589649,36572920:36573195:36581640:36581736:36589532:36589649,	36581641	36581736	36581737	36581737	Splice_Site	G	A	e1+1
UCEC	TCGA-AX-A0J1-01	TJP2	ENST00000348208.4,ENST00000606364.1,ENST00000265384.7,ENST00000539225.1,ENST00000535702.1,ENST00000423935.1,ENST00000453658.2,ENST00000377259.1,ENST00000377245.4	chr9	71827463:71827517:71831254:71831379:71833172:71833275,	71831255	71831379	71831254	71831254	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UF-01	ZFAND5	ENST00000376960.4,ENST00000237937.3,ENST00000376956.3,ENST00000488164.1,ENST00000376962.5,ENST00000471197.1,ENST00000343431.2	chr9	74971861:74971972:74974333:74974437:74975025:74975131,	74974334	74974437	74974438	74974438	Splice_Site	C	A	e3-1
UCEC	TCGA-AX-A064-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000376871.3,ENST00000449912.2,ENST00000451710.3,ENST00000376872.3	chr9	77347600:77347652:77353322:77353528:77354282:77354365,	77353323	77353528	77353322	77353322	Splice_Site	C	T	e36+1
UCEC	TCGA-AP-A0LM-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000337006.4,ENST00000376083.3	chr9	88161881:88162201:88190229:88190390:88193834:88193940,	88190230	88190390	88190228	88190228	Splice_Site	A	G	e24+2
UCEC	TCGA-D1-A103-01	AGTPBP1	ENST00000491784.1	chr9	88293249:88293313:88296182:88296250:88307603:88307695,88292350:88292497:88296182:88296250:88307603:88307695,	88296183	88296250	88296182	88296182	Splice_Site	C	T	e3+1
UCEC	TCGA-BS-A0TA-01	SPIN1	ENST00000469017.2,ENST00000541629.1,ENST00000485804.1,ENST00000375859.3	chr9	91063855:91063904:91083286:91083520:91089992:91090118,91077410:91077664:91083286:91083520:91089992:91090118,	91083287	91083520	91083522	91083522	Splice_Site	T	C	e4+2
UCEC	TCGA-D1-A15X-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860863	96860863	Splice_Site	T	C	e6+2
UCEC	TCGA-AP-A059-01	HSD17B3	ENST00000375262.2,ENST00000375263.3	chr9	99008837:99008872:99012032:99012068:99013699:99013767,	99012033	99012068	99012069	99012069	Splice_Site	C	T	e6-1
UCEC	TCGA-B5-A11E-01	SLC35D2	ENST00000375259.4	chr9	99107580:99107683:99113384:99113453:99114319:99114391,99086372:99086451:99113384:99113453:99114319:99114391,	99113385	99113453	99113454	99113454	Splice_Site	C	A	e6-1
UCEC	TCGA-AX-A060-01	NANS	ENST00000210444.5	chr9	100823063:100823279:100839199:100839299:100840474:100840586,	100839200	100839299	100839300	100839303	Splice_Site	GTAA	-	e3+1
UCEC	TCGA-AP-A059-01	GALNT12	ENST00000375011.3	chr9	101589033:101589223:101594053:101594239:101597530:101597561,	101594054	101594239	101594053	101594053	Splice_Site	G	T	e4-1
UCEC	TCGA-AP-A0LT-01	ABCA1	ENST00000374736.3	chr9	107565564:107565597:107566906:107567001:107568521:107568711,	107566907	107567001	107566905	107566905	Splice_Site	A	G	e31+2
UCEC	TCGA-BG-A0MQ-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114345831:114345869:114348277:114348445:114355205:114355262,	114348278	114348445	114348276	114348276	Splice_Site	A	G	e4+2
UCEC	TCGA-AP-A0LM-01	SNX30	ENST00000374232.3	chr9	115567055:115567247:115579984:115580095:115593004:115593163,	115579985	115580095	115579984	115579984	Splice_Site	G	A	e3-1
UCEC	TCGA-AX-A0J0-01	SNX30	ENST00000374232.3	chr9	115567055:115567247:115579984:115580095:115593004:115593163,	115579985	115580095	115580096	115580096	Splice_Site	G	A	e3+1
UCEC	TCGA-BS-A0UF-01	COL27A1	ENST00000494090.2	chr9	116945301:116945355:116958238:116958292:116967381:116967426,	116958239	116958292	116958293	116958293	Splice_Site	G	T	e7+1
UCEC	TCGA-D1-A163-01	FBXW2	ENST00000453291.1,ENST00000340778.5,ENST00000608872.1	chr9	123533688:123533795:123535031:123535118:123538370:123538504,	123535032	123535118	123535119	123535119	Splice_Site	C	A	e4-1
UCEC	TCGA-BG-A0LX-01	GSN	ENST00000432226.1,ENST00000373808.2,ENST00000436847.1,ENST00000341272.2,ENST00000545652.1,ENST00000373807.1,ENST00000412819.1,ENST00000394353.2,ENST00000373818.4,ENST00000373823.3,ENST00000449733.1	chr9	124074616:124074766:124076211:124076301:124079363:124079390,	124076212	124076301	124076302	124076302	Splice_Site	G	A	e6+1
UCEC	TCGA-AP-A051-01	TTLL11	ENST00000474723.1	chr9	124737162:124737258:124751473:124752049:124794001:124794135,124737162:124737258:124751473:124752049:124801550:124801647,	124751474	124752049	124752050	124752050	Splice_Site	C	A	e4-1
UCEC	TCGA-B5-A0JY-01	STRBP	ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2	chr9	125921374:125921486:125922645:125922741:125923255:125923347,	125922646	125922741	125922743	125922743	Splice_Site	T	C	e6-2
UCEC	TCGA-AX-A0J1-01	RABEPK	ENST00000259460.8,ENST00000373544.1,ENST00000394125.4,ENST00000394124.4,ENST00000373538.3	chr9	127963058:127963185:127965286:127965345:127969842:127970000,	127965287	127965345	127965346	127965346	Splice_Site	G	A	e1+1
UCEC	TCGA-AP-A059-01	PBX3	ENST00000373487.4,ENST00000373489.5,ENST00000491787.3,ENST00000342287.5,ENST00000447726.2	chr9	128510828:128510902:128677964:128678206:128691933:128692124,	128677965	128678206	128677963	128677963	Splice_Site	A	G	e3-2
UCEC	TCGA-BS-A0UV-01	TOR2A	ENST00000336067.6	chr9	130494842:130494970:130495663:130495839:130496577:130496843,130494842:130494970:130495663:130495839:130497398:130497554,130494190:130494557:130495663:130495839:130497398:130497554,130494190:130494557:130495663:130495839:130496577:130496843,	130495664	130495839	130495840	130495840	Splice_Site	C	T	e3-1
UCEC	TCGA-BS-A0UJ-01	SLC25A25	ENST00000373069.5,ENST00000373064.5,ENST00000373066.5,ENST00000433501.1,ENST00000432073.2,ENST00000373068.2	chr9	130864648:130864760:130865959:130866118:130868007:130868160,	130865960	130866118	130865958	130865958	Splice_Site	A	G	e5-2
UCEC	TCGA-AP-A059-01	ODF2	ENST00000444119.2,ENST00000393527.3	chr9	131221845:131221936:131223220:131223289:131231461:131231513,131222837:131222945:131223220:131223289:131231461:131231513,	131223221	131223289	131223220	131223220	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A059-01	ODF2	ENST00000469582.2,ENST00000351030.3,ENST00000372807.5	chr9	131221845:131221936:131223220:131223346:131231461:131231513,131222837:131222945:131223220:131223346:131231461:131231513,	131223221	131223346	131223220	131223220	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A059-01	SH3GLB2	ENST00000416629.1	chr9	131772398:131772488:131772948:131772972:131774514:131774577,131772398:131772488:131772948:131772972:131776689:131776737,	131772949	131772972	131772973	131772973	Splice_Site	C	A	e7-1
UCEC	TCGA-D1-A103-01	RAPGEF1	ENST00000372189.3,ENST00000372195.1,ENST00000372190.3	chr9	134504488:134504641:134514021:134514178:134518625:134518778,134505622:134505711:134514021:134514178:134518625:134518778,	134514022	134514178	134514179	134514179	Splice_Site	C	A	e5-1
UCEC	TCGA-B5-A0JY-01	CAMSAP1	ENST00000409386.3	chr9	138773478:138773640:138774661:138774924:138798845:138799070,	138774662	138774924	138774925	138774925	Splice_Site	C	A	e2-1
UCEC	TCGA-D1-A15X-01	LCN10	ENST00000527229.1	chr9	139634401:139634500:139635703:139635813:139636332:139636472,	139635704	139635813	139635702	139635702	Splice_Site	A	G	e3+2
UCEC	TCGA-D1-A16F-01	WDR37	ENST00000381329.1,ENST00000263150.4,ENST00000358220.1	chr10	1118055:1118233:1123846:1123943:1125950:1126046,	1123847	1123943	1123944	1123944	Splice_Site	G	A	e2+1
UCEC	TCGA-AX-A0J1-01	PITRM1	ENST00000451104.2,ENST00000224949.4,ENST00000380989.2	chr10	3207429:3207526:3207604:3207719:3208420:3208572,	3207605	3207719	3207721	3207721	Splice_Site	T	C	e5-2
UCEC	TCGA-B5-A0K6-01	PFKFB3	ENST00000540253.1,ENST00000379782.3,ENST00000379789.4,ENST00000360521.2,ENST00000477914.1,ENST00000461744.1,ENST00000490474.1,ENST00000467491.1,ENST00000379785.1,ENST00000379775.4,ENST00000317350.4	chr10	6259097:6259154:6261531:6261656:6262620:6262828,	6261532	6261656	6261658	6261658	Splice_Site	T	A	e7+2
UCEC	TCGA-B5-A0K6-01	PFKFB3	ENST00000536985.1	chr10	6259097:6259154:6261481:6261656:6262620:6262828,	6261482	6261656	6261658	6261658	Splice_Site	T	A	e7+2
UCEC	TCGA-A5-A0G5-01	ITIH2	ENST00000379587.4,ENST00000477751.1,ENST00000358415.4	chr10	7771914:7772096:7773773:7773959:7774300:7774436,	7773774	7773959	7773961	7773961	Splice_Site	T	A	e13+2
UCEC	TCGA-BS-A0TD-01	CDC123	ENST00000442050.1	chr10	12252288:12252321:12259359:12259466:12272946:12272977,	12259360	12259466	12259467	12259467	Splice_Site	G	A	e6+1
UCEC	TCGA-BS-A0UF-01	CDC123	ENST00000281141.4,ENST00000498747.1,ENST00000378900.2	chr10	12288147:12288276:12291579:12291717:12292309:12292358,	12291580	12291717	12291719	12291719	Splice_Site	T	C	e12+2
UCEC	TCGA-A5-A0G9-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877011	16877011	Splice_Site	A	G	e64+2
UCEC	TCGA-AX-A0J0-01	SLC39A12	ENST00000377374.4,ENST00000377371.3	chr10	18240891:18240954:18242119:18242466:18250509:18250791,	18242120	18242466	18242119	18242119	Splice_Site	G	T	e1-1
UCEC	TCGA-AX-A0J0-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375888.1	chr10	27504463:27504570:27506908:27507112:27508651:27508732,	27506909	27507112	27507113	27507113	Splice_Site	C	A	e7-1
UCEC	TCGA-AP-A051-01	MPP7	ENST00000375719.3,ENST00000540098.1,ENST00000337532.5,ENST00000375732.1,ENST00000441595.2,ENST00000496637.2,ENST00000445954.2	chr10	28348578:28348672:28358700:28358781:28378599:28378770,	28358701	28358781	28358700	28358700	Splice_Site	C	T	e12+1
UCEC	TCGA-BS-A0UV-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3	chr10	34690753:34690845:34739244:34739376:34759012:34759191,	34739245	34739376	34739377	34739377	Splice_Site	C	A	e5-1
UCEC	TCGA-B5-A0JY-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3	chr10	34690753:34690845:34759012:34759191:34805906:34806087,34739244:34739376:34759012:34759191:34805906:34806087,	34759013	34759191	34759192	34759192	Splice_Site	C	A	e4-1
UCEC	TCGA-BS-A0UV-01	MAPK8	ENST00000374176.4,ENST00000360332.3,ENST00000374189.1	chr10	49635122:49635186:49639235:49639313:49642921:49642938,49635122:49635186:49639235:49639313:49642926:49643173,	49639236	49639313	49639235	49639235	Splice_Site	G	T	e10-1
UCEC	TCGA-AP-A0LM-01	PCDH15	ENST00000395430.1,ENST00000414778.1,ENST00000395433.1,ENST00000395432.2	chr10	55587152:55587308:55591074:55591293:55600079:55600256,	55591075	55591293	55591294	55591294	Splice_Site	C	A	e30-1
UCEC	TCGA-BG-A0VZ-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000520133.1,ENST00000398972.3	chr10	71649169:71649196:71654307:71654334:71654430:71654457,	71654308	71654334	71654307	71654307	Splice_Site	G	T	e10-1
UCEC	TCGA-AP-A056-01	CDH23	ENST00000224721.6,ENST00000398792.3	chr10	73490225:73490361:73491743:73492132:73493996:73494098,	73491744	73492132	73492133	73492133	Splice_Site	G	A	e31+1
UCEC	TCGA-BG-A0M4-01	CAMK2G	ENST00000472912.1,ENST00000444854.2,ENST00000441192.1,ENST00000322680.3,ENST00000433289.1	chr10	75583797:75583842:75585036:75585105:75587846:75587879,75583797:75583842:75585036:75585105:75597225:75597269,	75585037	75585105	75585106	75585106	Splice_Site	C	T	e14-1
UCEC	TCGA-BG-A0M4-01	CAMK2G	ENST00000474131.1	chr10	75583797:75583842:75585078:75585105:75597225:75597269,	75585079	75585105	75585106	75585106	Splice_Site	C	T	e14-1
UCEC	TCGA-AP-A051-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729731	78729731	Splice_Site	C	T	e20+1
UCEC	TCGA-D1-A103-01	BMPR1A	ENST00000372037.3	chr10	88659783:88659883:88671996:88672141:88676890:88677083,	88671997	88672141	88671996	88671996	Splice_Site	G	T	e6-1
UCEC	TCGA-A5-A0RA-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685315	89685318	Splice_Site	GTAA	-	e3+1
UCEC	TCGA-AX-A06L-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690801	89690801	Splice_Site	A	G	e4-2
UCEC	TCGA-D1-A17R-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690802	89690802	Splice_Site	G	A	e4-1
UCEC	TCGA-D1-A17U-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712017	89712017	Splice_Site	G	T	e6+1
UCEC	TCGA-BG-A0MT-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717609	89717609	Splice_Site	G	C	e7-1
UCEC	TCGA-A5-A0GB-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717609	89717609	Splice_Site	G	T	e7-1
UCEC	TCGA-AX-A064-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717778	89717778	Splice_Site	T	C	e7+2
UCEC	TCGA-A5-A0GP-01	LIPA	ENST00000336233.5,ENST00000456827.1,ENST00000428800.1,ENST00000282673.4	chr10	90987956:90988155:91005432:91005550:91007294:91007406,	91005433	91005550	91005432	91005432	Splice_Site	C	T	e2+1
UCEC	TCGA-D1-A103-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96064238:96064402:96066183:96066445:96068337:96068456,	96066184	96066445	96066183	96066183	Splice_Site	G	T	e25-1
UCEC	TCGA-BS-A0UV-01	CYP2C19	ENST00000464755.1,ENST00000371321.3	chr10	96541577:96541754:96580252:96580394:96602593:96602781,	96580253	96580394	96580252	96580252	Splice_Site	G	T	e6-1
UCEC	TCGA-AP-A059-01	SCD	ENST00000370355.2	chr10	102107820:102108103:102112122:102112253:102114183:102114389,	102112123	102112253	102112122	102112122	Splice_Site	G	T	e3-1
UCEC	TCGA-A5-A0VP-01	SUFU	ENST00000423559.2,ENST00000369899.2,ENST00000369902.3	chr10	104356896:104357050:104359189:104359301:104375024:104375159,	104359190	104359301	104359302	104359302	Splice_Site	G	A	e8+1
UCEC	TCGA-BS-A0UV-01	CYP17A1	ENST00000369887.3	chr10	104592749:104592965:104593792:104593879:104594541:104594771,	104593793	104593879	104593880	104593880	Splice_Site	C	A	e4-1
UCEC	TCGA-AP-A051-01	COL17A1	ENST00000369733.3,ENST00000353479.5	chr10	105812788:105812893:105813677:105813740:105813849:105813876,	105813678	105813740	105813677	105813677	Splice_Site	C	T	e21+1
UCEC	TCGA-B5-A11G-01	ADD3	ENST00000356080.4,ENST00000277900.8,ENST00000475954.1	chr10	111765561:111765909:111860382:111860606:111872534:111872652,111768009:111768057:111860382:111860606:111872534:111872652,	111860383	111860606	111860608	111860608	Splice_Site	T	C	e1+2
UCEC	TCGA-AP-A059-01	ADD3	ENST00000360162.3,ENST00000356080.4,ENST00000277900.8,ENST00000468251.1,ENST00000484622.1,ENST00000468345.1,ENST00000496517.1,ENST00000497125.1	chr10	111872534:111872673:111876016:111876168:111877099:111877117,	111876017	111876168	111876169	111876169	Splice_Site	G	T	e3+1
UCEC	TCGA-D1-A17Q-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115381666:115381939:115383287:115383395:115384584:115384689,	115383288	115383395	115383396	115383396	Splice_Site	C	A	e23-1
UCEC	TCGA-BS-A0UF-01	ABLIM1	ENST00000440467.1,ENST00000533213.2,ENST00000369252.4,ENST00000392955.3,ENST00000428430.1,ENST00000277895.5	chr10	116232735:116232891:116233637:116233715:116247716:116247752,	116233638	116233715	116233716	116233716	Splice_Site	C	A	e9-1
UCEC	TCGA-AP-A056-01	GFRA1	ENST00000544592.1,ENST00000369234.4,ENST00000355422.6,ENST00000439649.3,ENST00000369236.1	chr10	117825083:117825137:117849251:117849433:117853212:117853347,	117849252	117849433	117849250	117849250	Splice_Site	A	G	e8+2
UCEC	TCGA-AP-A059-01	UROS	ENST00000420761.1,ENST00000368797.4,ENST00000462490.1,ENST00000368786.1	chr10	127484671:127484757:127486633:127486714:127495981:127496034,	127486634	127486714	127486632	127486632	Splice_Site	G	A	e6+2
UCEC	TCGA-B5-A11R-01	PTPRE	ENST00000479896.1,ENST00000419012.2,ENST00000306042.5,ENST00000254667.3	chr10	129854386:129854477:129859202:129859279:129859942:129859979,	129859203	129859279	129859202	129859202	Splice_Site	G	C	e6-1
UCEC	TCGA-B5-A11G-01	JAKMIP3	ENST00000298622.4	chr10	133978173:133978239:133980486:133980559:133981456:133982537,	133980487	133980559	133980485	133980485	Splice_Site	A	C	e21-2
UCEC	TCGA-B5-A11Y-01	SYT8	ENST00000424556.2,ENST00000381978.3,ENST00000341958.3,ENST00000381968.3	chr11	1857115:1857214:1857355:1857514:1857654:1857782,	1857356	1857514	1857515	1857515	Splice_Site	G	A	e5+1
UCEC	TCGA-BS-A0UJ-01	SMPD1	ENST00000533123.1	chr11	6412616:6413386:6414846:6414923:6415125:6415271,	6414847	6414923	6414846	6414846	Splice_Site	G	A	e4-1
UCEC	TCGA-B5-A0JY-01	NRIP3	ENST00000309166.3	chr11	9005618:9005671:9007257:9007397:9009094:9009177,	9007258	9007397	9007398	9007398	Splice_Site	C	T	e4-1
UCEC	TCGA-B5-A0JR-01	DENND5A	ENST00000328194.3,ENST00000530044.1,ENST00000526707.1	chr11	9202313:9202631:9215040:9215228:9225206:9225864,	9215041	9215228	9215039	9215040	Splice_Site	CA	-	e5+2
UCEC	TCGA-BS-A0UV-01	IPO7	ENST00000379719.3	chr11	9455116:9455183:9455267:9455393:9456480:9456578,	9455268	9455393	9455267	9455267	Splice_Site	G	T	e18-1
UCEC	TCGA-BG-A0M3-01	AMPD3	ENST00000529834.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000444303.2	chr11	10516445:10516577:10517116:10517280:10518358:10518485,	10517117	10517280	10517281	10517282	Splice_Site	-	T	e9+1
UCEC	TCGA-D1-A17Q-01	PARVA	ENST00000530755.1,ENST00000538608.1,ENST00000528916.1,ENST00000550549.1,ENST00000539723.1,ENST00000334956.8,ENST00000533345.1	chr11	12495291:12495381:12495459:12495530:12499393:12499471,	12495460	12495530	12495459	12495459	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UV-01	TPH1	ENST00000341556.2,ENST00000250018.2	chr11	18048036:18048172:18050711:18050908:18051058:18051126,	18050712	18050908	18050711	18050711	Splice_Site	C	T	e5+1
UCEC	TCGA-AP-A051-01	SAA2	ENST00000256733.4,ENST00000528349.1	chr11	18267456:18267595:18269467:18269562:18270149:18270182,	18269468	18269562	18269467	18269467	Splice_Site	C	T	e1+1
UCEC	TCGA-AP-A059-01	LDHA	ENST00000396222.2,ENST00000460405.1,ENST00000542179.1,ENST00000227157.4,ENST00000375710.3,ENST00000537296.1,ENST00000486690.2,ENST00000540430.1,ENST00000545215.1,ENST00000543695.1,ENST00000422447.3,ENST00000379412.5	chr11	18422453:18422557:18424386:18424560:18425240:18425306,	18424387	18424560	18424561	18424561	Splice_Site	G	A	e4+1
UCEC	TCGA-AP-A059-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812409	31812409	Splice_Site	C	A	e10-1
UCEC	TCGA-B5-A11S-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31812257:31812408:31814985:31815101:31815199:31815350,	31814986	31815101	31815103	31815103	Splice_Site	T	C	e9-2
UCEC	TCGA-B5-A0JY-01	CD44	ENST00000425428.2	chr11	35160852:35160917:35198121:35198287:35208378:35208447,	35198122	35198287	35198121	35198121	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A051-01	CD82	ENST00000227155.4,ENST00000526958.1,ENST00000530931.1,ENST00000530601.1	chr11	44626607:44626732:44626904:44626979:44636821:44636845,	44626905	44626979	44626903	44626903	Splice_Site	A	G	e4-2
UCEC	TCGA-AP-A054-01	PHF21A	ENST00000527401.1,ENST00000418153.2,ENST00000257821.4	chr11	45958044:45958120:45959707:45959863:45967390:45967420,	45959708	45959863	45959706	45959706	Splice_Site	A	G	e13+2
UCEC	TCGA-AP-A059-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000543978.1,ENST00000524984.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000527911.1	chr11	46399747:46399779:46400006:46400050:46400540:46400661,	46400007	46400050	46400051	46400051	Splice_Site	G	A	e27+1
UCEC	TCGA-B5-A11E-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000402799.1,ENST00000311027.5,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47303931:47304167:47304363:47304520:47305728:47305832,	47304364	47304520	47304522	47304522	Splice_Site	T	C	e9+2
UCEC	TCGA-AP-A059-01	MTCH2	ENST00000539759.1,ENST00000533571.1,ENST00000542981.1,ENST00000302503.3	chr11	47656223:47656286:47657096:47657123:47660250:47660343,	47657097	47657123	47657124	47657124	Splice_Site	C	T	e4-1
UCEC	TCGA-B5-A11E-01	P2RX3	ENST00000263314.2	chr11	57135482:57135576:57135844:57135910:57136833:57136911,	57135845	57135910	57135844	57135844	Splice_Site	G	T	e10-1
UCEC	TCGA-BS-A0UF-01	SERPING1	ENST00000378323.4,ENST00000378324.2,ENST00000531133.1,ENST00000278407.4	chr11	57373543:57373686:57373880:57374020:57379189:57379409,	57373881	57374020	57374022	57374022	Splice_Site	T	C	e5+2
UCEC	TCGA-BS-A0UF-01	SERPING1	ENST00000403558.1	chr11	57373482:57373686:57373853:57374020:57379189:57379409,	57373854	57374020	57374022	57374022	Splice_Site	T	C	e5+2
UCEC	TCGA-AP-A056-01	CTNND1	ENST00000532787.1,ENST00000528232.1,ENST00000530094.1,ENST00000415361.2,ENST00000529986.1	chr11	57529268:57529518:57561481:57561553:57563048:57563201,	57561482	57561553	57561554	57561554	Splice_Site	G	A	e2+1
UCEC	TCGA-AX-A05Z-01	PATL1	ENST00000300146.9	chr11	59422995:59423213:59423428:59423518:59423971:59424073,	59423429	59423518	59423519	59423519	Splice_Site	C	A	e7-1
UCEC	TCGA-BK-A13C-01	MS4A1	ENST00000532073.1	chr11	60231760:60231817:60233393:60233630:60234431:60234533,60231760:60231817:60233393:60233630:60234470:60234533,	60233394	60233630	60233393	60233393	Splice_Site	G	T	e4-1
UCEC	TCGA-AX-A0J0-01	SLC22A10	ENST00000544661.1,ENST00000532724.1,ENST00000533483.1	chr11	63066985:63067101:63069800:63069876:63071579:63071688,	63069801	63069876	63069800	63069800	Splice_Site	G	T	e7-1
UCEC	TCGA-AX-A0J0-01	SLC22A10	ENST00000332793.6	chr11	63066985:63067101:63069800:63070015:63071579:63071688,	63069801	63070015	63069800	63069800	Splice_Site	G	T	e7-1
UCEC	TCGA-D1-A17Q-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63472322:63472379:63486452:63486661,63449044:63449250:63472322:63472379:63517462:63517669,63449044:63449250:63472322:63472379:63481442:63481638,63449044:63449250:63472322:63472379:63486173:63488504,	63472323	63472379	63472322	63472322	Splice_Site	G	T	e2-1
UCEC	TCGA-D1-A167-01	ZFPL1	ENST00000453524.2,ENST00000533216.1,ENST00000294258.3	chr11	64851800:64851850:64852162:64852272:64852586:64852698,	64852163	64852272	64852274	64852274	Splice_Site	T	C	e1+2
UCEC	TCGA-D1-A176-01	SCYL1	ENST00000528545.1,ENST00000525364.1	chr11	65304061:65304221:65304456:65304599:65305282:65305351,	65304457	65304599	65304600	65304601	Splice_Site	GT	-	e14+1
UCEC	TCGA-A5-A0VQ-01	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000394227.3,ENST00000527525.1	chr11	65408301:65409071:65409720:65409848:65409933:65410024,	65409721	65409848	65409720	65409720	Splice_Site	G	A	e2-1
UCEC	TCGA-D1-A0ZS-01	YIF1A	ENST00000471387.2,ENST00000526497.1,ENST00000376901.4	chr11	66052393:66052437:66052851:66053007:66053171:66053229,	66052852	66053007	66052851	66052851	Splice_Site	C	T	e6+1
UCEC	TCGA-B5-A0JY-01	RPS6KB2	ENST00000312629.5	chr11	67196997:67197066:67200070:67200128:67200207:67200286,67198838:67198986:67200070:67200128:67200422:67200452,67198838:67198986:67200070:67200128:67200207:67200286,	67200071	67200128	67200130	67200130	Splice_Site	T	C	e6+2
UCEC	TCGA-B5-A11E-01	NDUFS8	ENST00000528492.1	chr11	67803094:67803255:67803719:67803848:67803928:67803981,67800607:67800750:67803719:67803848:67803928:67803981,67798179:67798200:67803719:67803848:67803928:67803981,	67803720	67803848	67803719	67803719	Splice_Site	G	T	e5-1
UCEC	TCGA-D1-A103-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68115314:68115711:68125117:68125315:68131214:68131383,	68125118	68125315	68125316	68125316	Splice_Site	G	A	e3+1
UCEC	TCGA-AP-A051-01	CLPB	ENST00000544683.1,ENST00000445069.2,ENST00000535477.1,ENST00000538039.1,ENST00000539148.1,ENST00000294053.3	chr11	72091324:72091428:72114009:72114096:72141355:72141407,	72114010	72114096	72114097	72114097	Splice_Site	C	A	e3-1
UCEC	TCGA-AX-A0J0-01	C2CD3	ENST00000313663.7,ENST00000415191.2,ENST00000539061.1,ENST00000334126.7	chr11	73850862:73850873:73872443:73872601:73879388:73879658,	73872444	73872601	73872602	73872602	Splice_Site	C	T	e3-1
UCEC	TCGA-B5-A0JY-01	SLCO2B1	ENST00000428359.2,ENST00000527180.1,ENST00000341411.4,ENST00000531713.1,ENST00000534186.1,ENST00000289575.5	chr11	74873699:74873830:74875007:74875145:74876831:74876875,	74875008	74875145	74875147	74875147	Splice_Site	T	C	e3+2
UCEC	TCGA-AP-A051-01	ACER3	ENST00000530182.1,ENST00000532485.1	chr11	76571993:76572123:76637600:76637711:76670022:76670075,	76637601	76637711	76637712	76637712	Splice_Site	G	A	e2+1
UCEC	TCGA-AX-A05Z-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76869322:76869476:76870492:76870569:76871208:76871328,	76870493	76870569	76870492	76870492	Splice_Site	G	A	e9-1
UCEC	TCGA-BS-A0UV-01	PAK1	ENST00000530617.1	chr11	77090961:77091039:77103375:77103586:77184596:77184780,77090961:77091039:77103375:77103586:77122818:77122949,	77103376	77103586	77103375	77103375	Splice_Site	C	T	e1+1
UCEC	TCGA-BS-A0TA-01	ALG8	ENST00000524925.1,ENST00000532440.1,ENST00000299626.5,ENST00000530454.1,ENST00000525870.1,ENST00000525755.1,ENST00000376156.3,ENST00000529139.1,ENST00000526737.1	chr11	77823811:77823816:77824931:77825035:77825311:77825422,	77824932	77825035	77825036	77825036	Splice_Site	C	A	e7-1
UCEC	TCGA-D1-A17Q-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89133184:89133247:89133382:89133547:89135493:89135710,	89133383	89133547	89133548	89133548	Splice_Site	C	A	e10-1
UCEC	TCGA-BS-A0UV-01	SIK2	ENST00000304987.3	chr11	111558724:111558886:111571609:111571734:111572175:111572299,	111571610	111571734	111571609	111571609	Splice_Site	G	T	e5-1
UCEC	TCGA-B5-A11E-01	BCO2	ENST00000357685.5,ENST00000361053.4,ENST00000438022.1,ENST00000393032.2,ENST00000531169.1,ENST00000460924.2,ENST00000532593.1	chr11	112084564:112084584:112085484:112085667:112086942:112087053,	112085485	112085667	112085668	112085668	Splice_Site	G	T	e10+1
UCEC	TCGA-D1-A101-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113705058	113705058	Splice_Site	C	T	e6-1
UCEC	TCGA-B5-A0JN-01	BACE1	ENST00000530824.1,ENST00000428381.2,ENST00000445823.2,ENST00000513780.1,ENST00000392937.6,ENST00000509916.1,ENST00000510630.1,ENST00000313005.6	chr11	117161349:117161375:117161615:117161765:117162427:117162529,	117161616	117161765	117161767	117161767	Splice_Site	T	A	e7-2
UCEC	TCGA-D1-A103-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000528225.1,ENST00000532993.1,ENST00000356641.3	chr11	120312415:120312526:120312812:120312911:120316130:120316173,	120312813	120312911	120312812	120312812	Splice_Site	G	T	e15-1
UCEC	TCGA-B5-A11E-01	CRTAM	ENST00000227348.4	chr11	122720775:122720922:122722400:122722553:122724650:122724794,	122722401	122722553	122722400	122722400	Splice_Site	G	T	e3-1
UCEC	TCGA-A5-A0VQ-01	TBRG1	ENST00000530731.1,ENST00000375005.4,ENST00000284290.4	chr11	124494826:124494897:124495566:124495799:124496708:124496946,124494826:124494897:124495566:124495799:124496799:124496831,	124495567	124495799	124495566	124495566	Splice_Site	G	T	e3-1
UCEC	TCGA-AP-A059-01	FEZ1	ENST00000278919.3,ENST00000532981.1	chr11	125333379:125333466:125351429:125351529:125359362:125359718,	125351430	125351529	125351530	125351530	Splice_Site	C	A	e2-1
UCEC	TCGA-D1-A17Q-01	CCND2	ENST00000261254.3	chr12	4387965:4388085:4398007:4398156:4409025:4414516,	4398008	4398156	4398007	4398007	Splice_Site	G	T	e4-1
UCEC	TCGA-AP-A0LM-01	C12orf4	ENST00000545746.1,ENST00000261250.3	chr12	4614471:4614546:4626226:4626355:4627223:4627421,	4626227	4626355	4626356	4626356	Splice_Site	C	A	e8-1
UCEC	TCGA-D1-A0ZU-01	ANO2	ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5848482:5848565:5853322:5853483:5860001:5860136,	5853323	5853483	5853322	5853322	Splice_Site	C	A	e12+1
UCEC	TCGA-AX-A05Z-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14576842	14576842	Splice_Site	G	A	e1-1
UCEC	TCGA-AP-A059-01	EPS8	ENST00000543523.1,ENST00000543468.1,ENST00000546311.1,ENST00000543612.1,ENST00000535752.1,ENST00000281172.5	chr12	15822601:15822759:15823789:15823857:15834159:15834236,	15823790	15823857	15823789	15823789	Splice_Site	C	A	e3+1
UCEC	TCGA-AP-A059-01	PYROXD1	ENST00000545178.1,ENST00000538582.1,ENST00000544970.1,ENST00000240651.9,ENST00000543476.1	chr12	21593301:21593382:21598280:21598400:21602496:21602625,	21598281	21598400	21598280	21598280	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UV-01	FGFR1OP2	ENST00000327214.5	chr12	27109475:27109593:27110533:27110676:27116274:27116388,	27110534	27110676	27110533	27110533	Splice_Site	G	T	e3-1
UCEC	TCGA-D1-A17Q-01	TM7SF3	ENST00000535260.1,ENST00000343028.4	chr12	27129262:27129290:27133498:27133579:27135705:27135788,27132834:27132869:27133498:27133579:27135705:27135792,	27133499	27133579	27133580	27133580	Splice_Site	C	A	e8-1
UCEC	TCGA-B5-A11E-01	ERGIC2	ENST00000360150.4,ENST00000551467.1	chr12	29493965:29494151:29494666:29494749:29496052:29496215,	29494667	29494749	29494750	29494750	Splice_Site	C	A	e12-1
UCEC	TCGA-AP-A0LM-01	TWF1	ENST00000547459.1,ENST00000395510.2,ENST00000546506.1,ENST00000325127.4,ENST00000552521.1,ENST00000546662.1,ENST00000548315.1	chr12	44194276:44194333:44196088:44196267:44198297:44198375,	44196089	44196267	44196087	44196087	Splice_Site	A	G	e3+2
UCEC	TCGA-BS-A0U8-01	CCNT1	ENST00000417344.2	chr12	49089781:49089945:49091920:49091966:49093560:49093623,49089541:49089612:49091920:49091966:49093560:49093623,	49091921	49091966	49091968	49091969	Splice_Site	-	A	e6-2
UCEC	TCGA-BS-A0TE-01	ADCY6	ENST00000357869.3,ENST00000550422.1,ENST00000307885.4	chr12	49168184:49168301:49168473:49168561:49168739:49168837,	49168474	49168561	49168472	49168472	Splice_Site	A	G	e12+2
UCEC	TCGA-AP-A0LM-01	ASIC1	ENST00000228468.4,ENST00000447966.2	chr12	50453669:50453737:50470995:50471146:50471782:50471910,	50470996	50471146	50470994	50470994	Splice_Site	A	C	e3-2
UCEC	TCGA-BS-A0UF-01	ATF1	ENST00000262053.3,ENST00000552487.1,ENST00000552510.1	chr12	51189691:51189792:51203238:51203372:51207792:51207975,	51203239	51203372	51203238	51203238	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UF-01	TFCP2	ENST00000307660.4,ENST00000548115.1,ENST00000257915.5,ENST00000548108.1	chr12	51497452:51497546:51497937:51497986:51500307:51500396,	51497938	51497986	51497987	51497987	Splice_Site	C	A	e9-1
UCEC	TCGA-BS-A0UV-01	KRT7	ENST00000331817.5,ENST00000546856.1	chr12	52632502:52632559:52635255:52635420:52636795:52636921,	52635256	52635420	52635421	52635421	Splice_Site	G	A	e5+1
UCEC	TCGA-B5-A0JY-01	CSAD	ENST00000542115.1	chr12	53567128:53567260:53567511:53567554:53575009:53575135,	53567512	53567554	53567555	53567555	Splice_Site	C	A	e2-1
UCEC	TCGA-BG-A0LX-01	AAAS	ENST00000547238.1,ENST00000549821.1,ENST00000547520.1,ENST00000549450.1,ENST00000549983.1,ENST00000547761.2,ENST00000550286.1,ENST00000209873.4	chr12	53708183:53708225:53708534:53708633:53708877:53708911,	53708535	53708633	53708533	53708533	Splice_Site	A	G	e6+2
UCEC	TCGA-AP-A0LM-01	SLC39A5	ENST00000454355.2,ENST00000436633.1,ENST00000266980.4,ENST00000481103.1	chr12	56625249:56625345:56626472:56626656:56628607:56628770,	56626473	56626656	56626472	56626472	Splice_Site	G	T	e2-1
UCEC	TCGA-BS-A0UF-01	MYO1A	ENST00000554234.1,ENST00000544473.1,ENST00000442789.2,ENST00000300119.3	chr12	57437023:57437142:57437639:57437787:57437889:57437993,	57437640	57437787	57437788	57437788	Splice_Site	C	A	e9-1
UCEC	TCGA-BS-A0UF-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58000666	58000666	Splice_Site	G	T	e2-1
UCEC	TCGA-B5-A11E-01	AGAP2	ENST00000257897.3,ENST00000328568.5,ENST00000547588.1	chr12	58128101:58128187:58128374:58128462:58129151:58129210,	58128375	58128462	58128374	58128374	Splice_Site	C	T	e3+1
UCEC	TCGA-D1-A0ZQ-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62940676:62940852:62943447:62943610:62946660:62946954,	62943448	62943610	62943446	62943446	Splice_Site	A	T	e23-2
UCEC	TCGA-D1-A103-01	TBK1	ENST00000331710.5	chr12	64889262:64889384:64889478:64889555:64890146:64890186,	64889479	64889555	64889478	64889478	Splice_Site	G	A	e14-1
UCEC	TCGA-A5-A0GH-01	CAPS2	ENST00000328705.3,ENST00000409799.1,ENST00000336815.6,ENST00000409004.1,ENST00000442339.2,ENST00000393284.3,ENST00000409445.3	chr12	75678740:75678860:75683400:75683555:75685523:75685600,	75683401	75683555	75683399	75683399	Splice_Site	A	G	e15+2
UCEC	TCGA-B5-A11G-01	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78592384:78592456:78593114:78593311:78594252:78594342,	78593115	78593311	78593313	78593313	Splice_Site	T	C	e36+2
UCEC	TCGA-D1-A17D-01	PPFIA2	ENST00000550359.2,ENST00000550584.2,ENST00000552948.1,ENST00000333447.7,ENST00000549396.1,ENST00000407050.4,ENST00000548790.1,ENST00000549325.1,ENST00000545296.2,ENST00000548586.1	chr12	81799565:81799682:81833750:81833825:81839334:81839357,	81833751	81833825	81833826	81833826	Splice_Site	C	A	e5-1
UCEC	TCGA-AP-A0LF-01	TSPAN19	ENST00000552392.1	chr12	85417103:85417178:85421676:85421801:85423496:85423569,85418429:85418550:85421676:85421801:85423496:85423569,	85421677	85421801	85421802	85421802	Splice_Site	C	A	e3-1
UCEC	TCGA-AX-A0J0-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88456468:88456555:88457757:88457892:88462298:88462422,	88457758	88457892	88457893	88457893	Splice_Site	C	A	e44-1
UCEC	TCGA-D1-A16X-01	SLC25A3	ENST00000547534.1,ENST00000548847.1,ENST00000401722.3,ENST00000552981.1,ENST00000188376.5,ENST00000549338.1	chr12	98987756:98987913:98989504:98989626:98991633:98991812,	98989505	98989626	98989504	98989504	Splice_Site	G	A	e2-1
UCEC	TCGA-AP-A054-01	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99076920:99077052:99080525:99080651:99093185:99093347,	99080526	99080651	99080653	99080653	Splice_Site	T	C	e15+2
UCEC	TCGA-D1-A177-01	HCFC2	ENST00000229330.4	chr12	104480624:104480792:104481763:104481816:104487163:104487341,	104481764	104481816	104481818	104481818	Splice_Site	T	C	e9+2
UCEC	TCGA-AP-A056-01	TCP11L2	ENST00000299045.3	chr12	106729416:106729604:106729809:106729991:106734603:106734776,	106729810	106729991	106729809	106729809	Splice_Site	G	T	e7-1
UCEC	TCGA-AP-A059-01	TCP11L2	ENST00000299045.3	chr12	106729809:106729991:106734603:106734776:106740063:106740793,	106734604	106734776	106734603	106734603	Splice_Site	G	A	e8-1
UCEC	TCGA-BS-A0UJ-01	BTBD11	ENST00000280758.5,ENST00000357167.4,ENST00000490090.2	chr12	108010865:108010959:108011077:108011213:108011934:108012155,	108011078	108011213	108011214	108011214	Splice_Site	G	A	e9+1
UCEC	TCGA-BS-A0UF-01	PPTC7	ENST00000548721.1,ENST00000354300.3	chr12	110974573:110974900:110975948:110976078:110977626:110977750,	110975949	110976078	110976079	110976079	Splice_Site	C	A	e5-1
UCEC	TCGA-AP-A059-01	SH2B3	ENST00000341259.2	chr12	111856143:111856681:111884556:111884658:111884745:111884837,	111884557	111884658	111884556	111884556	Splice_Site	G	T	e2-1
UCEC	TCGA-D1-A17H-01	NAA25	ENST00000551858.1,ENST00000547133.1,ENST00000552527.1,ENST00000261745.4	chr12	112516485:112516545:112518863:112518938:112528529:112528668,112516485:112516545:112518863:112518938:112525486:112525605,	112518864	112518938	112518862	112518862	Splice_Site	A	T	e5+2
UCEC	TCGA-AX-A06H-01	RBM19	ENST00000392561.3,ENST00000552386.1,ENST00000545145.2,ENST00000261741.5	chr12	114356196:114356252:114358415:114358495:114362501:114362562,	114358416	114358495	114358497	114358498	Splice_Site	-	GA	e19-2
UCEC	TCGA-A5-A0GH-01	TAOK3	ENST00000537305.1,ENST00000535570.1,ENST00000419821.2,ENST00000392533.3	chr12	118675906:118675974:118677031:118677077:118681219:118681253,	118677032	118677077	118677078	118677078	Splice_Site	C	G	e4-1
UCEC	TCGA-BS-A0UV-01	ANAPC5	ENST00000441917.2,ENST00000535482.1,ENST00000545218.1,ENST00000534976.1,ENST00000344395.4,ENST00000541887.1,ENST00000544314.1,ENST00000261819.3,ENST00000539079.1,ENST00000535641.1	chr12	121757499:121757621:121758187:121758262:121764898:121765034,	121758188	121758262	121758186	121758186	Splice_Site	A	T	e12+2
UCEC	TCGA-A5-A0VO-01	WDR66	ENST00000397454.2,ENST00000288912.4	chr12	122386889:122386967:122389385:122389436:122392025:122392240,	122389386	122389436	122389385	122389385	Splice_Site	G	A	e8-1
UCEC	TCGA-AP-A051-01	OGFOD2	ENST00000545033.1	chr12	123460357:123460414:123461417:123461517:123462988:123463116,	123461418	123461517	123461417	123461417	Splice_Site	G	T	e3-1
UCEC	TCGA-AX-A05Z-01	GLT1D1	ENST00000413816.2,ENST00000539044.1,ENST00000442111.2,ENST00000281703.6	chr12	129338147:129338194:129360458:129360607:129373183:129373289,	129360459	129360607	129360609	129360609	Splice_Site	T	G	e2+2
UCEC	TCGA-AP-A059-01	FBRSL1	ENST00000261673.6,ENST00000434748.2	chr12	133148024:133148110:133148873:133148930:133149112:133149180,	133148874	133148930	133148873	133148873	Splice_Site	G	A	e10-1
UCEC	TCGA-AX-A05Z-01	TPTE2	ENST00000382978.1,ENST00000400103.2,ENST00000255310.6,ENST00000457266.2,ENST00000382977.4,ENST00000400230.2,ENST00000390680.2,ENST00000382975.4	chr13	19997191:19997304:19999086:19999157:19999846:19999973,19997191:19997304:19999086:19999157:20000564:20000657,	19999087	19999157	19999158	19999158	Splice_Site	C	A	e19-1
UCEC	TCGA-AP-A059-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262661	25262661	Splice_Site	G	A	e4+1
UCEC	TCGA-AP-A056-01	POMP	ENST00000380842.4,ENST00000460403.1	chr13	29242609:29242711:29246475:29246569:29252171:29253062,	29246476	29246569	29246475	29246475	Splice_Site	G	A	e5-1
UCEC	TCGA-AP-A059-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47266670:47266776:47269027:47269152:47273470:47273538,	47269028	47269152	47269154	47269154	Splice_Site	C	T	e9+2
UCEC	TCGA-AX-A05Z-01	BORA	ENST00000377814.2,ENST00000390667.5	chr13	73303063:73303231:73309097:73309143:73312099:73312181,73305418:73305525:73309097:73309143:73312099:73312181,	73309098	73309143	73309097	73309097	Splice_Site	G	T	e3-1
UCEC	TCGA-AX-A0J0-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2,ENST00000360084.5	chr13	77799569:77799689:77807290:77807398:77817193:77817295,	77807291	77807398	77807290	77807290	Splice_Site	C	T	e18+1
UCEC	TCGA-AX-A05Z-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000377246.3	chr13	78188030:78188090:78191733:78191793:78191937:78191997,	78191734	78191793	78191733	78191733	Splice_Site	G	A	e24-1
UCEC	TCGA-AP-A059-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95672084:95673936:95686858:95686993:95695935:95696041,	95686859	95686993	95686994	95686994	Splice_Site	C	A	e30-1
UCEC	TCGA-BS-A0TC-01	ABCC4	ENST00000538287.1,ENST00000376887.4,ENST00000412704.1,ENST00000431522.1,ENST00000536256.1	chr13	95840706:95840796:95847089:95847191:95858785:95858969,	95847090	95847191	95847192	95847192	Splice_Site	C	A	e9-1
UCEC	TCGA-AP-A051-01	DCUN1D2	ENST00000478244.1	chr13	114117165:114117206:114128438:114128569:114134889:114135058,114115369:114115451:114128438:114128569:114144981:114145006,114115369:114115451:114128438:114128569:114134889:114135058,	114128439	114128569	114128570	114128570	Splice_Site	C	A	e4-1
UCEC	TCGA-BS-A0UF-01	TFDP1	ENST00000375370.5,ENST00000465174.1	chr13	114239057:114239203:114240088:114240164:114265310:114265377,	114240089	114240164	114240088	114240088	Splice_Site	G	T	e1-1
UCEC	TCGA-BG-A0VZ-01	CDC16	ENST00000356221.3,ENST00000252458.6,ENST00000375308.1,ENST00000360383.3,ENST00000375310.1,ENST00000484907.1,ENST00000252457.5,ENST00000375312.3	chr13	115024809:115024873:115027361:115027423:115028353:115028454,	115027362	115027423	115027421	115027424	Splice_Site	TAAG	-	e16-1
UCEC	TCGA-B5-A11H-01	UPF3A	ENST00000493727.1,ENST00000475218.2,ENST00000375299.3,ENST00000474056.1,ENST00000351487.5	chr13	115057108:115057267:115064314:115064475:115067205:115067231,	115064315	115064475	115064476	115064476	Splice_Site	G	A	e8+1
UCEC	TCGA-AX-A063-01	DHRS2	ENST00000432832.2,ENST00000250383.6,ENST00000556729.1,ENST00000344777.7,ENST00000556701.1,ENST00000553896.1	chr14	24108035:24108213:24108387:24108565:24109002:24109104,	24108388	24108565	24108387	24108387	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A059-01	TINF2	ENST00000559969.1,ENST00000558476.1,ENST00000267415.7,ENST00000559549.1,ENST00000540705.1,ENST00000399423.4	chr14	24709884:24710081:24710225:24710322:24710409:24710517,	24710226	24710322	24710323	24710323	Splice_Site	C	A	e5-1
UCEC	TCGA-BG-A0VZ-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3	chr14	35031865:35032381:35036891:35036977:35037059:35037219,	35036892	35036977	35036979	35036979	Splice_Site	T	C	e13-2
UCEC	TCGA-AP-A0LT-01	CFL2	ENST00000298159.6	chr14	35182265:35182342:35182459:35182767:35183743:35183783,	35182460	35182767	35182459	35182459	Splice_Site	C	T	e2+1
UCEC	TCGA-AP-A059-01	PPP2R3C	ENST00000555219.1	chr14	35554741:35554984:35557156:35557216:35564253:35564390,	35557157	35557216	35557156	35557156	Splice_Site	C	T	e12+1
UCEC	TCGA-AX-A0J0-01	BRMS1L	ENST00000548758.1	chr14	36295662:36295864:36300615:36300706:36302183:36302311,	36300616	36300706	36300615	36300615	Splice_Site	G	T	e2-1
UCEC	TCGA-D1-A103-01	PSMA3	ENST00000555931.1	chr14	58724642:58724716:58727676:58727738:58730422:58730488,	58727677	58727738	58727739	58727739	Splice_Site	G	A	e6+1
UCEC	TCGA-D1-A103-01	PSMA3	ENST00000557087.1,ENST00000557508.1,ENST00000554812.1,ENST00000555743.1,ENST00000216455.4	chr14	58724642:58724716:58727665:58727738:58730422:58730488,	58727666	58727738	58727739	58727739	Splice_Site	G	A	e6+1
UCEC	TCGA-D1-A103-01	PSMA3	ENST00000412908.2	chr14	58724642:58724716:58727686:58727738:58730422:58730488,	58727687	58727738	58727739	58727739	Splice_Site	G	A	e6+1
UCEC	TCGA-AP-A0LE-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58937330:58937441:58938916:58938997:58941324:58941515,	58938917	58938997	58938915	58938915	Splice_Site	A	G	e17-2
UCEC	TCGA-BS-A0UV-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60194387	60194387	Splice_Site	C	A	e3-1
UCEC	TCGA-A5-A0VP-01	PIGH	ENST00000561303.1	chr14	68056843:68056889:68059351:68059435:68060459:68060530,68056843:68056889:68059351:68059435:68060444:68060669,	68059352	68059435	68059436	68059436	Splice_Site	C	T	e3-1
UCEC	TCGA-D1-A17Q-01	RDH12	ENST00000539142.1,ENST00000551171.1,ENST00000267502.3	chr14	68193880:68193907:68195907:68196097:68200462:68201167,	68195908	68196097	68195907	68195907	Splice_Site	G	T	e6-1
UCEC	TCGA-B5-A11E-01	SLC8A3	ENST00000356921.2	chr14	70518706:70518831:70527552:70527656:70546681:70546897,70518706:70518831:70527552:70527656:70633355:70635201,	70527553	70527656	70527551	70527551	Splice_Site	A	G	e2+2
UCEC	TCGA-B5-A0JY-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117051	72117051	Splice_Site	G	A	e4-1
UCEC	TCGA-B5-A0JY-01	GSTZ1	ENST00000555093.1,ENST00000553586.1,ENST00000556627.1,ENST00000557639.1,ENST00000216465.5,ENST00000393734.1,ENST00000349555.3,ENST00000557053.1,ENST00000361389.4,ENST00000554279.1	chr14	77795465:77795544:77796097:77796150:77796652:77796702,	77796098	77796150	77796097	77796097	Splice_Site	G	A	e7-1
UCEC	TCGA-B5-A11E-01	TTC8	ENST00000345383.5,ENST00000380656.2,ENST00000556077.1,ENST00000338104.6,ENST00000556133.1	chr14	89307380:89307540:89307768:89307858:89319314:89319341,89307380:89307540:89307768:89307858:89310149:89310194,	89307769	89307858	89307768	89307768	Splice_Site	G	T	e6-1
UCEC	TCGA-AP-A059-01	RPS6KA5	ENST00000261991.3,ENST00000418736.2,ENST00000554206.1,ENST00000536315.2	chr14	91409421:91409529:91413778:91413894:91444649:91444868,	91413779	91413894	91413895	91413895	Splice_Site	C	T	e4-1
UCEC	TCGA-B5-A11E-01	LGMN	ENST00000556097.1	chr14	93178181:93178300:93179067:93179216:93180167:93180230,	93179068	93179216	93179217	93179217	Splice_Site	C	A	e7-1
UCEC	TCGA-B5-A11E-01	LGMN	ENST00000334869.4,ENST00000393218.2,ENST00000555699.1,ENST00000557609.1,ENST00000557434.1	chr14	93178181:93178300:93179149:93179216:93180167:93180230,	93179150	93179216	93179217	93179217	Splice_Site	C	A	e7-1
UCEC	TCGA-AP-A059-01	LGMN	ENST00000556097.1	chr14	93178181:93178300:93179067:93179216:93180167:93180230,	93179068	93179216	93179217	93179217	Splice_Site	C	A	e7-1
UCEC	TCGA-AP-A059-01	LGMN	ENST00000334869.4,ENST00000393218.2,ENST00000555699.1,ENST00000557609.1,ENST00000557434.1	chr14	93178181:93178300:93179149:93179216:93180167:93180230,	93179150	93179216	93179217	93179217	Splice_Site	C	A	e7-1
UCEC	TCGA-AX-A0J1-01	GOLGA5	ENST00000163416.2	chr14	93301903:93302009:93303730:93303794:93305710:93306141,	93303731	93303794	93303795	93303795	Splice_Site	G	A	e11+1
UCEC	TCGA-B5-A11E-01	UBR7	ENST00000554232.1	chr14	93673400:93673786:93676169:93676303:93676993:93677054,	93676170	93676303	93676168	93676168	Splice_Site	A	G	e2-2
UCEC	TCGA-B5-A11E-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1,ENST00000555664.1	chr14	94155010:94155186:94156462:94156649:94158094:94158292,	94156463	94156649	94156462	94156462	Splice_Site	G	A	e43-1
UCEC	TCGA-BS-A0UJ-01	TECPR2	ENST00000558678.1,ENST00000561228.1	chr14	102829415:102829453:102842986:102843277:102873674:102873803,	102842987	102843277	102843279	102843279	Splice_Site	T	C	e1+2
UCEC	TCGA-AP-A059-01	FMN1	ENST00000559047.1	chr15	33300214:33300276:33357157:33357275:33380999:33381175,	33357158	33357275	33357277	33357277	Splice_Site	T	C	e2-2
UCEC	TCGA-AP-A051-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35168135:35168207:35174702:35174840:35176725:35176935,	35174703	35174840	35174841	35174841	Splice_Site	C	A	e27-1
UCEC	TCGA-D1-A17D-01	THBS1	ENST00000260356.5	chr15	39885597:39885869:39886299:39886397:39886501:39886641,	39886300	39886397	39886399	39886399	Splice_Site	T	C	e19+2
UCEC	TCGA-A5-A0GA-01	EIF2AK4	ENST00000263791.5,ENST00000558629.1,ENST00000560855.1,ENST00000382727.2,ENST00000558557.1	chr15	40322593:40322657:40324369:40324438:40324957:40325002,	40324370	40324438	40324439	40324440	Splice_Site	-	T	e36+1
UCEC	TCGA-AP-A051-01	DNAJC17	ENST00000559238.1,ENST00000220496.4	chr15	41068401:41068490:41068739:41068825:41071420:41071508,	41068740	41068825	41068739	41068739	Splice_Site	C	T	e5+1
UCEC	TCGA-AP-A059-01	TYRO3	ENST00000560227.1,ENST00000263798.3,ENST00000559066.1	chr15	41857223:41857339:41859557:41859735:41860414:41860463,	41859558	41859735	41859736	41859736	Splice_Site	G	T	e7+1
UCEC	TCGA-AP-A059-01	EHD4	ENST00000220325.4	chr15	42211407:42211820:42235264:42235362:42245961:42246138,	42235265	42235362	42235264	42235264	Splice_Site	C	T	e3+1
UCEC	TCGA-AP-A0LM-01	TMEM62	ENST00000563859.1,ENST00000260403.2,ENST00000569369.1	chr15	43470804:43470909:43473378:43473497:43476457:43476583,	43473379	43473497	43473499	43473499	Splice_Site	T	C	e13+2
UCEC	TCGA-B5-A0JY-01	ADAL	ENST00000562188.1,ENST00000428046.3,ENST00000422466.2	chr15	43641104:43641243:43643138:43643239:43643948:43644287,	43643139	43643239	43643138	43643138	Splice_Site	G	T	e9-1
UCEC	TCGA-AP-A0LM-01	CASC4	ENST00000299957.6,ENST00000345795.2,ENST00000559222.1,ENST00000559037.1	chr15	44620897:44620985:44624185:44624276:44629960:44630079,	44624186	44624276	44624277	44624277	Splice_Site	G	A	e4+1
UCEC	TCGA-AP-A0LM-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44876456:44876756:44877833:44878048:44881449:44881612,	44877834	44878048	44878049	44878049	Splice_Site	C	A	e29-1
UCEC	TCGA-AX-A063-01	SLC24A5	ENST00000341459.3,ENST00000449382.2	chr15	48428967:48429160:48431165:48431372:48433309:48433411,	48431166	48431372	48431165	48431165	Splice_Site	G	A	e7-1
UCEC	TCGA-A5-A0GH-01	AP4E1	ENST00000561393.1,ENST00000558439.1,ENST00000261842.5,ENST00000560508.1	chr15	51260459:51260574:51276218:51276342:51285566:51285822,	51276219	51276342	51276218	51276218	Splice_Site	G	A	e16-1
UCEC	TCGA-D1-A103-01	DMXL2	ENST00000543779.2,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51742391:51742543:51743841:51743894:51745746:51745838,	51743842	51743894	51743895	51743895	Splice_Site	C	A	e41-1
UCEC	TCGA-AX-A05Z-01	DMXL2	ENST00000543779.2,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51742391:51742543:51743841:51743894:51745746:51745838,	51743842	51743894	51743895	51743895	Splice_Site	C	A	e41-1
UCEC	TCGA-AX-A0J0-01	LEO1	ENST00000315141.5	chr15	52254585:52254690:52257945:52258701:52263884:52263973,	52257946	52258701	52258702	52258702	Splice_Site	C	A	e2-1
UCEC	TCGA-D1-A17D-01	MAPK6	ENST00000261845.5	chr15	52350829:52350994:52353495:52353697:52356098:52358462,	52353496	52353697	52353495	52353495	Splice_Site	G	A	e4-1
UCEC	TCGA-B5-A11H-01	MYO5A	ENST00000399231.3,ENST00000568914.1,ENST00000356338.6,ENST00000553916.1	chr15	52638557:52638658:52641014:52641023:52643450:52643579,	52641015	52641023	52641025	52641025	Splice_Site	T	C	e29-2
UCEC	TCGA-A5-A0VP-01	WDR72	ENST00000557913.1,ENST00000560036.1,ENST00000396328.1,ENST00000360509.5,ENST00000559418.1	chr15	54007389:54007564:54008803:54008882:54014998:54015105,	54008804	54008882	54008802	54008802	Splice_Site	A	G	e3+2
UCEC	TCGA-AX-A05Z-01	TEX9	ENST00000352903.2,ENST00000561221.2	chr15	56657643:56657675:56657776:56657868:56665638:56665702,	56657777	56657868	56657869	56657869	Splice_Site	G	T	e2+1
UCEC	TCGA-BS-A0UF-01	MNS1	ENST00000260453.3	chr15	56736641:56736871:56739038:56739141:56748591:56748719,	56739039	56739141	56739142	56739142	Splice_Site	C	A	e4-1
UCEC	TCGA-D1-A167-01	LCTL	ENST00000537670.1,ENST00000341509.5	chr15	66850319:66850374:66853343:66853439:66853524:66853653,	66853344	66853439	66853342	66853342	Splice_Site	A	G	e6+2
UCEC	TCGA-D1-A103-01	MAP2K5	ENST00000354498.5,ENST00000560591.1,ENST00000395476.2,ENST00000178640.5	chr15	67842371:67842420:67855620:67855688:67873091:67873161,	67855621	67855688	67855620	67855620	Splice_Site	G	T	e3-1
UCEC	TCGA-D1-A103-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68473549:68473692:68475967:68476005:68479879:68480402,	68475968	68476005	68475967	68475967	Splice_Site	G	A	e13-1
UCEC	TCGA-BS-A0UJ-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000566885.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72197266:72197347:72208710:72208833:72226010:72226050,	72208711	72208833	72208709	72208709	Splice_Site	A	C	e18+2
UCEC	TCGA-B5-A0JY-01	CPEB1	ENST00000423133.2,ENST00000562019.1,ENST00000261723.6,ENST00000450751.2,ENST00000568757.1,ENST00000563800.1,ENST00000564522.1,ENST00000568128.1,ENST00000398591.2	chr15	83224619:83224872:83226509:83226736:83240093:83240282,	83226510	83226736	83226509	83226509	Splice_Site	C	T	e4+1
UCEC	TCGA-AP-A0LM-01	SH3GL3	ENST00000427482.2,ENST00000324537.5,ENST00000563901.1,ENST00000535412.1,ENST00000434347.1	chr15	84237287:84237424:84241316:84241450:84245334:84245493,	84241317	84241450	84241451	84241451	Splice_Site	G	T	e5+1
UCEC	TCGA-B5-A11E-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85660871:85661070:85664027:85664245:85666291:85666424,	85664028	85664245	85664247	85664247	Splice_Site	T	C	e18+2
UCEC	TCGA-BS-A0UJ-01	ISG20	ENST00000306072.5	chr15	89182193:89182307:89182573:89182825:89195400:89195541,89182193:89182307:89182573:89182825:89195340:89195417,	89182574	89182825	89182826	89182826	Splice_Site	G	T	e1+1
UCEC	TCGA-AX-A05Z-01	ANPEP	ENST00000560030.1,ENST00000300060.6,ENST00000558177.1	chr15	90342656:90342790:90344341:90344418:90344665:90344838,	90344342	90344418	90344341	90344341	Splice_Site	C	T	e11+1
UCEC	TCGA-B5-A11E-01	WDR90	ENST00000552943.1	chr16	703524:703670:703745:705147:705306:705468,	703746	705147	703745	703745	Splice_Site	G	A	e13-1
UCEC	TCGA-D1-A103-01	JMJD8	ENST00000562111.1,ENST00000564436.1	chr16	732957:733087:733166:733234:733321:733441,732771:732874:733166:733234:733321:733342,	733167	733234	733166	733166	Splice_Site	C	T	e7+1
UCEC	TCGA-AP-A051-01	MLST8	ENST00000565687.1,ENST00000564088.1,ENST00000562352.1,ENST00000397124.1,ENST00000301724.10,ENST00000565250.1,ENST00000568194.1,ENST00000569417.1,ENST00000565330.1,ENST00000568542.1,ENST00000382450.4	chr16	2257197:2257346:2258210:2258335:2258450:2258493,	2258211	2258335	2258336	2258336	Splice_Site	G	A	e6+1
UCEC	TCGA-D1-A103-01	NLRC3	ENST00000448023.2,ENST00000603128.1,ENST00000419350.2,ENST00000301749.7,ENST00000603507.1,ENST00000359128.5	chr16	3593424:3593508:3594245:3594329:3598134:3598218,	3594246	3594329	3594330	3594330	Splice_Site	C	A	e13-1
UCEC	TCGA-B5-A11E-01	MGRN1	ENST00000586183.1	chr16	4733855:4733933:4736259:4736304:4738796:4738810,	4736260	4736304	4736259	4736259	Splice_Site	G	T	e17-1
UCEC	TCGA-D1-A103-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4940184:4940335:4940728:4940922:4941811:4941950,	4940729	4940922	4940728	4940728	Splice_Site	C	T	e17+1
UCEC	TCGA-B5-A0JY-01	PDXDC1	ENST00000563679.1,ENST00000450288.2,ENST00000535621.2,ENST00000565362.1,ENST00000569715.1,ENST00000325823.7,ENST00000570001.1,ENST00000396410.4	chr16	15092199:15092262:15100250:15100440:15102635:15102697,15098043:15098190:15100250:15100440:15102635:15102697,	15100251	15100440	15100250	15100250	Splice_Site	G	T	e6-1
UCEC	TCGA-B5-A11E-01	NDE1	ENST00000396354.1,ENST00000396353.2,ENST00000574109.1,ENST00000577101.1,ENST00000342673.5,ENST00000396355.1	chr16	15781283:15781368:15785000:15785180:15788021:15788113,	15785001	15785180	15785181	15785181	Splice_Site	G	A	e5+1
UCEC	TCGA-AX-A05Z-01	MYH11	ENST00000452625.2,ENST00000396324.3	chr16	15876241:15876334:15878554:15878575:15880486:15880589,	15878555	15878575	15878554	15878554	Splice_Site	C	T	e5+1
UCEC	TCGA-AP-A056-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20348612:20348775:20352412:20352658:20355345:20355448,	20352413	20352658	20352411	20352411	Splice_Site	A	G	e6+2
UCEC	TCGA-BS-A0UJ-01	COG7	ENST00000307149.5,ENST00000567821.1	chr16	23421615:23421681:23424768:23424885:23428287:23428442,	23424769	23424885	23424887	23424887	Splice_Site	T	C	e10-2
UCEC	TCGA-AP-A051-01	SH2B1	ENST00000545570.1,ENST00000359285.5	chr16	28883660:28883722:28883854:28884079:28884490:28884590,	28883855	28884079	28883854	28883854	Splice_Site	G	T	e7-1
UCEC	TCGA-AP-A051-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000395532.4	chr16	28883660:28883722:28883854:28884026:28884490:28884590,	28883855	28884026	28883854	28883854	Splice_Site	G	T	e7-1
UCEC	TCGA-A5-A0GI-01	HIRIP3	ENST00000565996.1,ENST00000564026.1	chr16	30006423:30006538:30006663:30006784:30006861:30006913,	30006664	30006784	30006663	30006663	Splice_Site	C	T	e2+1
UCEC	TCGA-B5-A11E-01	C16orf58	ENST00000567994.1,ENST00000567578.1,ENST00000327237.2,ENST00000570164.1,ENST00000430477.2,ENST00000564807.1	chr16	31508199:31508271:31510622:31510728:31510813:31510846,	31510623	31510728	31510621	31510621	Splice_Site	A	G	e5+2
UCEC	TCGA-B5-A11H-01	PHKB	ENST00000323584.5,ENST00000299167.8,ENST00000455779.1,ENST00000566044.1	chr16	47627410:47627468:47628047:47628125:47630283:47630442,	47628048	47628125	47628127	47628127	Splice_Site	T	C	e12+2
UCEC	TCGA-AX-A063-01	CNEP1R1	ENST00000565556.1,ENST00000458059.3,ENST00000565457.1,ENST00000427478.2,ENST00000562576.1,ENST00000566093.1	chr16	50060306:50060378:50063635:50063709:50067307:50067417,	50063636	50063709	50063634	50063634	Splice_Site	A	G	e4-2
UCEC	TCGA-D1-A17Q-01	HEATR3	ENST00000299192.7,ENST00000285767.4	chr16	50120125:50120262:50128615:50128704:50134140:50134284,	50128616	50128704	50128615	50128615	Splice_Site	G	T	e12-1
UCEC	TCGA-AP-A059-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000583382.1,ENST00000577730.1,ENST00000585315.1,ENST00000584337.1	chr16	61854829:61855017:61858915:61859083:61891022:61891142,	61858916	61859083	61858915	61858915	Splice_Site	C	A	e4+1
UCEC	TCGA-A5-A0GH-01	CMTM3	ENST00000424011.2,ENST00000460097.1,ENST00000562707.1,ENST00000565003.1,ENST00000568477.1,ENST00000566121.1,ENST00000567572.1,ENST00000361909.4	chr16	66642272:66642367:66643337:66643433:66643785:66643906,	66643338	66643433	66643336	66643336	Splice_Site	A	G	e3-2
UCEC	TCGA-D1-A103-01	FHOD1	ENST00000567752.1,ENST00000561922.1,ENST00000258201.4	chr16	67271141:67271285:67271377:67271472:67271559:67271671,	67271378	67271472	67271473	67271473	Splice_Site	C	A	e8-1
UCEC	TCGA-BS-A0UM-01	LRRC36	ENST00000435835.3,ENST00000561821.1,ENST00000563189.1,ENST00000329956.6	chr16	67397492:67397617:67399206:67399258:67400919:67401360,	67399207	67399258	67399260	67399260	Splice_Site	T	C	e7+2
UCEC	TCGA-A5-A0GM-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645517	67645517	Splice_Site	G	A	e1+1
UCEC	TCGA-B5-A0JR-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000539828.2,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68191861:68191971:68200745:68200918:68208276:68208417,	68200746	68200918	68200744	68200744	Splice_Site	A	G	e5-2
UCEC	TCGA-AX-A05Z-01	PRMT7	ENST00000562050.1,ENST00000566341.1	chr16	68355328:68355365:68358585:68358735:68362968:68363062,68349881:68349977:68358585:68358735:68362968:68363062,	68358586	68358735	68358585	68358585	Splice_Site	G	T	e3-1
UCEC	TCGA-AP-A059-01	FUK	ENST00000464499.1,ENST00000378912.2,ENST00000288078.6	chr16	70501276:70501374:70501788:70501869:70502751:70502871,	70501789	70501869	70501788	70501788	Splice_Site	G	T	e7-1
UCEC	TCGA-DI-A0WH-01	PSMD7	ENST00000568717.1,ENST00000540379.1,ENST00000219313.4	chr16	74336109:74336190:74338200:74338292:74339186:74339504,	74338201	74338292	74338294	74338294	Splice_Site	T	C	e6+2
UCEC	TCGA-BS-A0UJ-01	BCAR1	ENST00000542031.2,ENST00000563038.1,ENST00000562556.1,ENST00000566982.1,ENST00000546196.1,ENST00000393422.2,ENST00000538440.2,ENST00000393420.6,ENST00000162330.5,ENST00000418647.3,ENST00000535626.2,ENST00000420641.3	chr16	75263408:75263921:75267743:75267833:75268786:75269884,	75267744	75267833	75267742	75267742	Splice_Site	A	G	e6+2
UCEC	TCGA-AP-A059-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81942020:81942196:81944124:81944325:81946201:81946321,	81944125	81944325	81944326	81944326	Splice_Site	G	A	e17+1
UCEC	TCGA-D1-A103-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81942020:81942196:81944124:81944325:81946201:81946321,	81944125	81944325	81944326	81944326	Splice_Site	G	A	e17+1
UCEC	TCGA-AP-A051-01	FBXO31	ENST00000311635.7,ENST00000561664.1,ENST00000563113.1	chr16	87377351:87377371:87380779:87380856:87393900:87393972,	87380780	87380856	87380857	87380857	Splice_Site	C	A	e3-1
UCEC	TCGA-B5-A0JY-01	SPIRE2	ENST00000565628.1	chr16	89930201:89930269:89935974:89936090:89936457:89936609,	89935975	89936090	89936091	89936091	Splice_Site	G	A	e14+1
UCEC	TCGA-B5-A11J-01	ZZEF1	ENST00000573183.1,ENST00000571436.1,ENST00000572426.1,ENST00000381638.2	chr17	3954074:3954337:3955264:3955430:3957350:3957489,	3955265	3955430	3955432	3955432	Splice_Site	T	C	e35-2
UCEC	TCGA-BG-A0W2-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	e3+1
UCEC	TCGA-BS-A0UV-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	e3+1
UCEC	TCGA-D1-A17B-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	e3+1
UCEC	TCGA-BG-A0VT-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	e3+1
UCEC	TCGA-BG-A0W1-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	e3+1
UCEC	TCGA-D1-A174-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	e3+1
UCEC	TCGA-A5-A0VP-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496467	4496467	Splice_Site	G	T	e3+1
UCEC	TCGA-AP-A05N-01	PSMB6	ENST00000270586.3	chr17	4700022:4700090:4700732:4700864:4700976:4701106,	4700733	4700864	4700732	4700732	Splice_Site	G	T	e3-1
UCEC	TCGA-D1-A17Q-01	ENO3	ENST00000521659.1,ENST00000522798.1,ENST00000519602.1,ENST00000518175.1,ENST00000520221.1,ENST00000522249.1,ENST00000522301.1,ENST00000521811.1,ENST00000519834.1,ENST00000323997.6	chr17	4856345:4856404:4856566:4856636:4857006:4857140,	4856567	4856636	4856566	4856566	Splice_Site	G	T	e4-1
UCEC	TCGA-AP-A0LM-01	AIPL1	ENST00000574913.1,ENST00000575265.1,ENST00000571740.1,ENST00000381129.3,ENST00000576776.1	chr17	6331637:6331826:6337238:6337418:6338328:6338472,	6337239	6337418	6337238	6337238	Splice_Site	C	T	e2+1
UCEC	TCGA-AP-A0LM-01	AIPL1	ENST00000570466.1	chr17	6331637:6331826:6337238:6337352:6338328:6338472,	6337239	6337352	6337238	6337238	Splice_Site	C	T	e2+1
UCEC	TCGA-AP-A051-01	ASGR2	ENST00000574868.1	chr17	7011780:7011876:7012090:7012207:7017492:7017559,7011780:7011876:7012090:7012207:7017435:7017492,	7012091	7012207	7012090	7012090	Splice_Site	C	T	e2+1
UCEC	TCGA-D1-A16I-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574034	7574034	Splice_Site	C	G	e9-1
UCEC	TCGA-AP-A056-01	CHD3	ENST00000470531.1,ENST00000358181.4,ENST00000330494.7,ENST00000466233.1,ENST00000380358.4	chr17	7807759:7807937:7808417:7808483:7808938:7808974,	7808418	7808483	7808417	7808417	Splice_Site	G	T	e26-1
UCEC	TCGA-D1-A163-01	CTC1	ENST00000315684.8,ENST00000578537.1	chr17	8132144:8132210:8132459:8132524:8132619:8132723,	8132460	8132524	8132526	8132526	Splice_Site	T	C	e20-2
UCEC	TCGA-D1-A177-01	SCO1	ENST00000577427.1	chr17	10595188:10595281:10596173:10596278:10599057:10599148,	10596174	10596278	10596173	10596173	Splice_Site	C	T	e3+1
UCEC	TCGA-AP-A0LM-01	SLC46A1	ENST00000584729.1,ENST00000440501.1	chr17	26727724:26727783:26729255:26729339:26731633:26731839,	26729256	26729339	26729340	26729340	Splice_Site	C	A	e3-1
UCEC	TCGA-AX-A060-01	SPAG5	ENST00000321765.5,ENST00000584206.1	chr17	26911350:26911498:26911669:26911763:26912119:26912233,	26911670	26911763	26911669	26911669	Splice_Site	C	T	e11+1
UCEC	TCGA-AP-A051-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26941899:26942264:26942681:26942816:26943113:26943215,	26942682	26942816	26942817	26942817	Splice_Site	C	A	e38-1
UCEC	TCGA-AP-A051-01	KIAA0100	ENST00000528896.2,ENST00000544884.1	chr17	26943906:26944017:26944249:26944336:26945808:26945989,	26944250	26944336	26944249	26944249	Splice_Site	C	T	e33+1
UCEC	TCGA-AP-A059-01	PROCA1	ENST00000473751.1,ENST00000578097.1	chr17	27031548:27031634:27031725:27031861:27037888:27038104,27031548:27031634:27031725:27031861:27033697:27033781,	27031726	27031861	27031862	27031862	Splice_Site	C	A	e2-1
UCEC	TCGA-AX-A0J1-01	TAOK1	ENST00000261716.3	chr17	27849305:27849537:27857424:27857637:27861135:27861318,	27857425	27857637	27857638	27857638	Splice_Site	G	A	e17+1
UCEC	TCGA-AP-A059-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601216	28601216	Splice_Site	C	A	e7-1
UCEC	TCGA-B5-A11E-01	ATAD5	ENST00000321990.4	chr17	29206440:29206505:29214209:29214390:29219624:29219806,	29214210	29214390	29214209	29214209	Splice_Site	G	T	e19-1
UCEC	TCGA-D1-A15Z-01	PGAP3	ENST00000579146.1	chr17	37832866:37833008:37840849:37841002:37842174:37842272,37830869:37830932:37840849:37841002:37844086:37844254,37830869:37830932:37840849:37841002:37842174:37842272,37829028:37829119:37840849:37841002:37842174:37842272,	37840850	37841002	37841004	37841004	Splice_Site	T	-	e3-2
UCEC	TCGA-AP-A051-01	PSMD3	ENST00000541736.1,ENST00000415039.3,ENST00000264639.4	chr17	38151428:38151548:38151676:38151780:38152435:38152591,	38151677	38151780	38151782	38151782	Splice_Site	T	C	e9+2
UCEC	TCGA-BS-A0UF-01	BRCA1	ENST00000352993.3,ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000351666.3,ENST00000491747.2,ENST00000586385.1,ENST00000354071.3,ENST00000461221.1,ENST00000591534.1,ENST00000357654.3,ENST00000471181.2	chr17	41199659:41199720:41201137:41201211:41203079:41203134,	41201138	41201211	41201212	41201212	Splice_Site	C	A	e20-1
UCEC	TCGA-BS-A0V6-01	GPATCH8	ENST00000591680.1	chr17	42513874:42513913:42541839:42541912:42552196:42552271,	42541840	42541912	42541838	42541838	Splice_Site	A	C	e3+2
UCEC	TCGA-B5-A11E-01	CCDC43	ENST00000588210.1	chr17	42755366:42756411:42757952:42758020:42759370:42759506,	42757953	42758020	42757952	42757952	Splice_Site	C	T	e4+1
UCEC	TCGA-B5-A11E-01	CCDC43	ENST00000315286.8	chr17	42755366:42756411:42757952:42758011:42759370:42759506,	42757953	42758011	42757952	42757952	Splice_Site	C	T	e4+1
UCEC	TCGA-D1-A168-01	KANSL1	ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1,ENST00000576870.1,ENST00000573682.1,ENST00000572218.1	chr17	44109530:44109665:44110445:44110558:44110768:44110826,	44110446	44110558	44110560	44110560	Splice_Site	T	A	e12-2
UCEC	TCGA-B5-A11Y-01	NPEPPS	ENST00000322157.4,ENST00000525007.1,ENST00000530173.1	chr17	45646794:45646860:45656755:45656877:45660107:45660138,	45656756	45656877	45656879	45656879	Splice_Site	T	C	e4+2
UCEC	TCGA-A5-A0GA-01	NPEPPS	ENST00000525021.1,ENST00000530514.1	chr17	45668082:45668247:45669269:45669426:45669850:45669911,	45669270	45669426	45669428	45669429	Splice_Site	-	AAA	e11+2
UCEC	TCGA-A5-A0GA-01	NPEPPS	ENST00000527298.1,ENST00000527964.1,ENST00000527360.1,ENST00000602788.1,ENST00000544660.1,ENST00000525037.1,ENST00000534814.1,ENST00000322157.4,ENST00000533538.1,ENST00000530173.1	chr17	45668082:45668247:45669321:45669426:45669850:45669911,	45669322	45669426	45669428	45669429	Splice_Site	-	AAA	e11+2
UCEC	TCGA-BS-A0U8-01	CDK5RAP3	ENST00000580391.1,ENST00000584991.1,ENST00000584168.1,ENST00000338399.4,ENST00000583697.1,ENST00000585163.1,ENST00000578663.1,ENST00000536708.2,ENST00000580670.2,ENST00000584063.1,ENST00000580287.1	chr17	46056200:46056283:46057958:46058164:46058528:46058700,	46057959	46058164	46058166	46058166	Splice_Site	T	C	e12+2
UCEC	TCGA-AX-A0J0-01	COL1A1	ENST00000225964.5	chr17	48275521:48275566:48275793:48275865:48276586:48276688,	48275794	48275865	48275866	48275866	Splice_Site	C	A	e6-1
UCEC	TCGA-BS-A0UF-01	SPAG9	ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1,ENST00000511312.2	chr17	49054468:49054582:49057106:49057278:49059884:49060033,	49057107	49057278	49057279	49057279	Splice_Site	C	A	e26-1
UCEC	TCGA-BS-A0UV-01	ANKFN1	ENST00000566473.2,ENST00000318698.2	chr17	54535223:54535340:54543716:54543932:54554848:54555015,	54543717	54543932	54543716	54543716	Splice_Site	G	T	e14-1
UCEC	TCGA-AP-A059-01	CLTC	ENST00000269122.3,ENST00000472129.3,ENST00000393043.1	chr17	57725600:57725762:57728563:57728677:57733214:57733388,	57728564	57728677	57728563	57728563	Splice_Site	G	A	e5-1
UCEC	TCGA-AP-A059-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61769092:61769222:61769601:61769779:61770908:61771224,	61769602	61769779	61769601	61769601	Splice_Site	G	A	e16-1
UCEC	TCGA-B5-A0JY-01	CEP95	ENST00000553956.2,ENST00000579117.1,ENST00000583457.1,ENST00000577476.1,ENST00000556440.2,ENST00000553412.1	chr17	62522283:62522318:62523228:62523382:62525405:62525545,	62523229	62523382	62523228	62523228	Splice_Site	G	T	e11-1
UCEC	TCGA-BS-A0UV-01	HELZ	ENST00000358691.5	chr17	65147161:65147340:65156376:65156478:65157012:65157192,	65156377	65156478	65156376	65156376	Splice_Site	C	A	e14+1
UCEC	TCGA-BS-A0UV-01	HELZ	ENST00000579953.1,ENST00000580168.1	chr17	65147161:65147340:65156376:65156481:65157012:65157192,	65156377	65156481	65156376	65156376	Splice_Site	C	A	e14+1
UCEC	TCGA-AP-A0LM-01	ABCA6	ENST00000589803.1,ENST00000284425.2	chr17	67108323:67108414:67109362:67109501:67109758:67109878,	67109363	67109501	67109362	67109362	Splice_Site	C	A	e14+1
UCEC	TCGA-B5-A0JY-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000432313.2,ENST00000523419.1,ENST00000522406.1	chr17	67193204:67193263:67197640:67197809:67210844:67210992,	67197641	67197809	67197811	67197811	Splice_Site	T	G	e8-2
UCEC	TCGA-BS-A0UF-01	SLC16A5	ENST00000585293.1,ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000329783.4	chr17	73085245:73085399:73089683:73089930:73094132:73094276,	73089684	73089930	73089932	73089932	Splice_Site	T	G	e1+2
UCEC	TCGA-AP-A0LM-01	RNF157	ENST00000591355.1,ENST00000592869.1,ENST00000269391.6	chr17	74150382:74150409:74151332:74151398:74151642:74151815,	74151333	74151398	74151332	74151332	Splice_Site	C	T	e16+1
UCEC	TCGA-AP-A051-01	SYNGR2	ENST00000225777.3,ENST00000585591.1,ENST00000590201.1	chr17	76164698:76164796:76167590:76167730:76167819:76168023,76166897:76167135:76167590:76167730:76167819:76167931,	76167591	76167730	76167590	76167590	Splice_Site	G	T	e3-1
UCEC	TCGA-AP-A059-01	DNAH17	ENST00000586052.1,ENST00000389840.5,ENST00000585328.1,ENST00000592152.1,ENST00000591369.1	chr17	76447577:76447755:76449424:76449547:76450551:76450787,	76449425	76449547	76449424	76449424	Splice_Site	C	T	e64+1
UCEC	TCGA-BG-A0M4-01	RPTOR	ENST00000570891.1,ENST00000306801.3,ENST00000577161.1,ENST00000544334.2	chr17	78599490:78599593:78617527:78617610:78681640:78681799,	78617528	78617610	78617612	78617612	Splice_Site	T	C	e3+2
UCEC	TCGA-AX-A0J0-01	BAIAP2	ENST00000572918.1,ENST00000571530.1,ENST00000572329.1,ENST00000576470.1,ENST00000573894.1,ENST00000321300.6,ENST00000575712.1,ENST00000435091.3,ENST00000321280.7,ENST00000575245.1,ENST00000575750.1,ENST00000428708.2	chr17	79027467:79027543:79031680:79031767:79058631:79058693,	79031681	79031767	79031768	79031768	Splice_Site	G	C	e3+1
UCEC	TCGA-BS-A0UF-01	NPLOC4	ENST00000571714.1,ENST00000331134.6,ENST00000374747.5,ENST00000574897.1,ENST00000539314.1	chr17	79534442:79534559:79536041:79536137:79539042:79539099,	79536042	79536137	79536138	79536138	Splice_Site	C	A	e14-1
UCEC	TCGA-AP-A051-01	LPIN2	ENST00000584294.1	chr18	2954513:2954597:2960646:2960847:3013084:3013313,	2960647	2960847	2960646	2960646	Splice_Site	C	T	e1+1
UCEC	TCGA-AP-A059-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000400111.3,ENST00000545076.1,ENST00000427684.2,ENST00000542652.2	chr18	5393178:5393477:5395065:5395146:5395607:5395706,5394681:5394792:5395065:5395146:5395607:5395706,	5395066	5395146	5395147	5395147	Splice_Site	C	A	e20-1
UCEC	TCGA-AP-A0LM-01	ANKRD29	ENST00000591280.1,ENST00000592179.1	chr18	21189187:21189255:21192055:21192154:21197695:21197791,21181240:21181273:21192055:21192154:21197695:21197791,	21192056	21192154	21192054	21192054	Splice_Site	A	G	e9+2
UCEC	TCGA-B5-A0JY-01	TTC39C	ENST00000317571.3,ENST00000578150.1	chr18	21594876:21595002:21644103:21644152:21645975:21646104,	21644104	21644152	21644103	21644103	Splice_Site	G	T	e2-1
UCEC	TCGA-BS-A0UF-01	TTC39C	ENST00000317571.3,ENST00000578150.1	chr18	21594876:21595002:21644103:21644152:21645975:21646104,	21644104	21644152	21644103	21644103	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A051-01	ST8SIA5	ENST00000590497.1,ENST00000588155.1,ENST00000538168.1	chr18	44272131:44272218:44284534:44284627:44301324:44301432,	44284535	44284627	44284628	44284628	Splice_Site	C	A	e2-1
UCEC	TCGA-D1-A17U-01	MYO5B	ENST00000285039.7	chr18	47479629:47479713:47480682:47480805:47488635:47488776,	47480683	47480805	47480807	47480807	Splice_Site	T	C	e13-2
UCEC	TCGA-AX-A05Z-01	TMX3	ENST00000564631.1,ENST00000299608.2	chr18	66346699:66346768:66348217:66348347:66350161:66350218,	66348218	66348347	66348217	66348217	Splice_Site	C	A	e14+1
UCEC	TCGA-AP-A0LM-01	CCDC102B	ENST00000360242.5,ENST00000319445.6,ENST00000584156.1	chr18	66541905:66542022:66564455:66564665:66678170:66678341,	66564456	66564665	66564454	66564454	Splice_Site	A	G	e5-2
UCEC	TCGA-BS-A0TC-01	TLE2	ENST00000591529.1,ENST00000426948.2	chr19	3000644:3000721:3002350:3002501:3005434:3005582,2997921:2997953:3002350:3002501:3005434:3005582,	3002351	3002501	3002502	3002502	Splice_Site	C	A	e18-1
UCEC	TCGA-AP-A059-01	AES	ENST00000221561.8,ENST00000586839.1,ENST00000586742.1,ENST00000592330.1,ENST00000327141.4	chr19	3056309:3056354:3057676:3057740:3061157:3061255,	3057677	3057740	3057741	3057741	Splice_Site	C	A	e3-1
UCEC	TCGA-AP-A059-01	NCLN	ENST00000590671.1,ENST00000588428.1,ENST00000246117.4	chr19	3196180:3196275:3198814:3198895:3201520:3201624,	3198815	3198895	3198896	3198896	Splice_Site	G	A	e5+1
UCEC	TCGA-BS-A0UV-01	MATK	ENST00000395040.2,ENST00000310132.6,ENST00000395045.2	chr19	3777972:3778420:3778506:3778593:3778989:3779185,	3778507	3778593	3778594	3778594	Splice_Site	C	T	e12-1
UCEC	TCGA-B5-A11E-01	LONP1	ENST00000587552.1,ENST00000591321.1,ENST00000585374.1,ENST00000590729.1,ENST00000540670.2,ENST00000360614.3,ENST00000590558.1,ENST00000593119.1	chr19	5707070:5707154:5707707:5707837:5708352:5708414,	5707708	5707837	5707707	5707707	Splice_Site	C	T	e6+1
UCEC	TCGA-BS-A0UJ-01	RFX2	ENST00000359161.3,ENST00000592546.1,ENST00000303657.5	chr19	6002732:6002881:6004211:6004309:6007022:6007177,	6004212	6004309	6004311	6004311	Splice_Site	T	C	e12-2
UCEC	TCGA-AP-A0LE-01	KHSRP	ENST00000595112.1,ENST00000595548.1,ENST00000398148.3,ENST00000595258.1	chr19	6420083:6420155:6420432:6420482:6421288:6421328,	6420433	6420482	6420483	6420483	Splice_Site	C	A	e5-1
UCEC	TCGA-AP-A0LM-01	MCOLN1	ENST00000264079.6,ENST00000394321.5	chr19	7592749:7592846:7593043:7593143:7593482:7593589,	7593044	7593143	7593144	7593144	Splice_Site	G	A	e7+1
UCEC	TCGA-AX-A05Z-01	RETN	ENST00000221515.2	chr19	7734212:7734330:7734706:7734784:7735104:7735235,	7734707	7734784	7734706	7734706	Splice_Site	G	A	e2-1
UCEC	TCGA-B5-A11Y-01	EVI5L	ENST00000270530.4,ENST00000538904.2	chr19	7911428:7911565:7912617:7912807:7913806:7914031,	7912618	7912807	7912617	7912617	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A0LM-01	MAP2K7	ENST00000397979.3,ENST00000397981.3,ENST00000397983.3	chr19	7974639:7974781:7974947:7975014:7975144:7975258,	7974948	7975014	7975016	7975016	Splice_Site	T	C	e3+2
UCEC	TCGA-AX-A0J0-01	ELAVL1	ENST00000596459.1,ENST00000351593.5,ENST00000407627.2	chr19	8028513:8028691:8032448:8032674:8038608:8038669,	8032449	8032674	8032675	8032675	Splice_Site	C	A	e4-1
UCEC	TCGA-D1-A17Q-01	COL5A3	ENST00000264828.3	chr19	10106239:10106293:10106741:10106795:10106881:10106938,	10106742	10106795	10106796	10106796	Splice_Site	C	A	e15-1
UCEC	TCGA-D1-A103-01	AP1M2	ENST00000250244.6,ENST00000590923.1,ENST00000591240.1	chr19	10687947:10688032:10689567:10689639:10690391:10690534,	10689568	10689639	10689640	10689640	Splice_Site	C	A	e8-1
UCEC	TCGA-BS-A0UF-01	AP1M2	ENST00000590923.1	chr19	10689567:10689639:10690391:10690540:10691941:10692068,	10690392	10690540	10690390	10690390	Splice_Site	A	C	e7+2
UCEC	TCGA-BS-A0UF-01	AP1M2	ENST00000250244.6,ENST00000591240.1	chr19	10689567:10689639:10690391:10690534:10691941:10692068,	10690392	10690534	10690390	10690390	Splice_Site	A	C	e7+2
UCEC	TCGA-AP-A051-01	LDLR	ENST00000545707.1,ENST00000558518.1,ENST00000252444.5,ENST00000455727.2,ENST00000535915.1	chr19	11238683:11238761:11240188:11240346:11241956:11242160,	11240189	11240346	11240348	11240348	Splice_Site	T	C	e17+2
UCEC	TCGA-D1-A176-01	RGL3	ENST00000563726.1,ENST00000380456.3,ENST00000566153.1,ENST00000562663.1,ENST00000565895.1,ENST00000453604.2,ENST00000393423.3	chr19	11515887:11515907:11515998:11516102:11517094:11517256,	11515999	11516102	11515998	11515998	Splice_Site	C	A	e8+1
UCEC	TCGA-D1-A17R-01	RAD23A	ENST00000586375.1	chr19	13059502:13059627:13060088:13060222:13063502:13063634,	13060089	13060222	13060223	13060223	Splice_Site	G	C	e7+1
UCEC	TCGA-AP-A059-01	ZSWIM4	ENST00000254323.2,ENST00000590508.1,ENST00000440752.2	chr19	13928029:13928167:13928535:13928790:13930170:13930306,	13928536	13928790	13928535	13928535	Splice_Site	G	T	e8-1
UCEC	TCGA-D1-A103-01	TPM4	ENST00000586833.1,ENST00000588507.1,ENST00000592138.1,ENST00000300933.4,ENST00000538887.1,ENST00000344824.6	chr19	16197232:16197350:16198836:16198907:16199854:16199930,	16198837	16198907	16198909	16198909	Splice_Site	T	C	e5+2
UCEC	TCGA-B5-A0JY-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16611602	16611602	Splice_Site	G	T	e1-1
UCEC	TCGA-AP-A054-01	SIN3B	ENST00000248054.5	chr19	16964953:16965072:16973162:16973370:16974490:16974607,	16973163	16973370	16973372	16973372	Splice_Site	T	C	e9+2
UCEC	TCGA-D1-A17Q-01	IL12RB1	ENST00000593993.2,ENST00000322153.7,ENST00000600835.2	chr19	18187106:18187137:18188325:18188465:18191641:18191811,	18188326	18188465	18188466	18188466	Splice_Site	C	A	e5-1
UCEC	TCGA-DI-A0WH-01	NCAN	ENST00000585410.1,ENST00000538881.1,ENST00000252575.6	chr19	19351411:19351494:19356121:19356266:19360574:19360738,19351411:19351494:19356121:19356266:19359508:19359691,	19356122	19356266	19356268	19356268	Splice_Site	T	C	e12+2
UCEC	TCGA-D1-A103-01	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000591698.1	chr19	33372749:33372919:33378657:33378747:33390762:33390904,	33378658	33378747	33378749	33378749	Splice_Site	T	G	e17-2
UCEC	TCGA-BS-A0TI-01	RHPN2	ENST00000254260.3	chr19	33503552:33503630:33512476:33512552:33517409:33517538,	33512477	33512552	33512476	33512476	Splice_Site	C	-	e4+1
UCEC	TCGA-AP-A059-01	GPI	ENST00000589399.1	chr19	34857687:34857756:34859553:34859607:34868407:34868483,	34859554	34859607	34859608	34859608	Splice_Site	G	A	e4+1
UCEC	TCGA-AP-A059-01	GPI	ENST00000356487.5,ENST00000590375.1,ENST00000592144.1,ENST00000586425.1,ENST00000588991.2	chr19	34857687:34857756:34859487:34859607:34868407:34868483,	34859488	34859607	34859608	34859608	Splice_Site	G	A	e4+1
UCEC	TCGA-D1-A103-01	FXYD5	ENST00000392219.2,ENST00000588699.1,ENST00000592290.1,ENST00000543307.1	chr19	35645655:35645772:35646453:35646514:35648323:35648404,35645689:35645712:35646453:35646514:35648323:35648404,	35646454	35646514	35646453	35646453	Splice_Site	G	T	e1-1
UCEC	TCGA-AP-A0LM-01	ZFP82	ENST00000392161.3,ENST00000392171.1	chr19	36898788:36898915:36900682:36900769:36909393:36909558,	36900683	36900769	36900681	36900681	Splice_Site	A	G	e1+2
UCEC	TCGA-AP-A059-01	EIF3K	ENST00000592558.1,ENST00000248342.4,ENST00000545173.2,ENST00000593149.1,ENST00000591409.1,ENST00000538434.1	chr19	39114744:39114837:39116667:39116742:39123069:39123136,	39116668	39116742	39116667	39116667	Splice_Site	G	T	e4-1
UCEC	TCGA-D1-A160-01	BLVRB	ENST00000597870.1,ENST00000263368.4	chr19	40964091:40964151:40964287:40964452:40971516:40971642,	40964288	40964452	40964286	40964286	Splice_Site	A	G	e2+2
UCEC	TCGA-A5-A0VQ-01	ZNF226	ENST00000588883.1,ENST00000586914.1,ENST00000413984.2	chr19	44669268:44669295:44669740:44669960:44674187:44674248,	44669741	44669960	44669961	44669961	Splice_Site	G	T	e0+1
UCEC	TCGA-A5-A0VQ-01	ZNF226	ENST00000585678.1,ENST00000300823.6,ENST00000337433.5,ENST00000588795.1	chr19	44669268:44669295:44669909:44669960:44674187:44674248,	44669910	44669960	44669961	44669961	Splice_Site	G	T	e0+1
UCEC	TCGA-D1-A101-01	TRAPPC6A	ENST00000588062.1,ENST00000585934.1,ENST00000006275.4,ENST00000592647.1	chr19	45666398:45666481:45667173:45667267:45667421:45667505,	45667174	45667267	45667269	45667269	Splice_Site	T	C	e5-2
UCEC	TCGA-D1-A103-01	PPM1N	ENST00000396735.2	chr19	46000508:46000601:46003206:46003324:46003713:46003819,46002867:46002983:46003206:46003324:46003713:46003819,	46003207	46003324	46003206	46003206	Splice_Site	G	T	e2-1
UCEC	TCGA-B5-A0K9-01	CCDC61	ENST00000595358.1	chr19	46518602:46518685:46519311:46519481:46519575:46519651,	46519312	46519481	46519482	46519482	Splice_Site	G	A	e9+1
UCEC	TCGA-B5-A0JY-01	EHD2	ENST00000263277.3,ENST00000538399.1	chr19	48229425:48229481:48239625:48239790:48244137:48244394,	48239626	48239790	48239625	48239625	Splice_Site	G	T	e4-1
UCEC	TCGA-AP-A059-01	CPT1C	ENST00000595969.1,ENST00000295404.5	chr19	50195495:50195650:50200582:50200722:50203940:50203946,50195495:50195650:50200582:50200722:50204573:50204653,	50200583	50200722	50200582	50200582	Splice_Site	G	T	e2-1
UCEC	TCGA-D1-A16X-01	CPT1C	ENST00000595969.1,ENST00000295404.5	chr19	50195495:50195650:50200582:50200722:50203940:50203946,50195495:50195650:50200582:50200722:50204573:50204653,	50200583	50200722	50200582	50200582	Splice_Site	G	T	e2-1
UCEC	TCGA-AP-A059-01	VRK3	ENST00000596121.1,ENST00000596814.1,ENST00000316763.3,ENST00000594090.1,ENST00000424804.2,ENST00000593919.1,ENST00000377011.2,ENST00000594948.1,ENST00000594092.1,ENST00000600284.1,ENST00000601341.1,ENST00000599538.1,ENST00000601912.1,ENST00000443401.2	chr19	50492952:50493028:50496116:50496209:50498070:50498176,	50496117	50496209	50496210	50496210	Splice_Site	C	T	e8-1
UCEC	TCGA-AP-A054-01	VRK3	ENST00000316763.3,ENST00000594090.1,ENST00000424804.2,ENST00000593919.1,ENST00000377011.2,ENST00000594948.1,ENST00000594092.1,ENST00000600284.1,ENST00000601341.1,ENST00000599538.1,ENST00000601912.1	chr19	50496116:50496209:50498070:50498176:50504046:50504111,50496116:50496209:50498070:50498176:50498447:50498532,	50498071	50498176	50498069	50498069	Splice_Site	A	G	e7+2
UCEC	TCGA-AX-A1C7-01	KLK6	ENST00000310157.2	chr19	51466722:51466805:51471320:51471368:51471796:51471847,51470506:51470581:51471320:51471368:51471796:51471847,	51471321	51471368	51471319	51471319	Splice_Site	A	G	e1+2
UCEC	TCGA-A5-A0GP-01	SIGLEC7	ENST00000305628.7	chr19	51645626:51646059:51648168:51648216:51649111:51649378,	51648169	51648216	51648167	51648167	Splice_Site	A	G	e3-2
UCEC	TCGA-BS-A0UV-01	ZNF480	ENST00000334564.7,ENST00000595962.1,ENST00000598016.1	chr19	52800431:52800476:52803646:52803737:52817405:52817532,	52803647	52803737	52803646	52803646	Splice_Site	G	T	e1-1
UCEC	TCGA-BS-A0UF-01	ZNF83	ENST00000595171.1,ENST00000596440.1,ENST00000600457.1,ENST00000598190.1,ENST00000594682.2	chr19	53138318:53138406:53164014:53164096:53193695:53193727,53158813:53158940:53164014:53164096:53193695:53193727,	53164015	53164096	53164097	53164097	Splice_Site	C	A	NULL
UCEC	TCGA-B5-A11N-01	LAIR2	ENST00000301202.2	chr19	55019105:55019399:55020244:55020295:55021735:55021897,	55020245	55020295	55020244	55020244	Splice_Site	G	A	e4-1
UCEC	TCGA-D1-A17H-01	ZNF446	ENST00000594369.1,ENST00000596341.1	chr19	58989463:58989548:58991009:58991094:58991296:58991386,	58991010	58991094	58991009	58991009	Splice_Site	G	T	e4-1
UCEC	TCGA-B5-A0JY-01	NSFL1C	ENST00000381653.5	chr20	1424379:1424556:1426310:1426794:1433137:1433275,	1426311	1426794	1426309	1426309	Splice_Site	A	G	e8+2
UCEC	TCGA-B5-A0JY-01	NSFL1C	ENST00000350991.4,ENST00000461211.1,ENST00000381658.4,ENST00000216879.4,ENST00000476071.1,ENST00000353088.2,ENST00000555944.1	chr20	1424379:1424556:1426310:1426475:1433137:1433275,	1426311	1426475	1426309	1426309	Splice_Site	A	G	e8+2
UCEC	TCGA-AP-A051-01	PANK2	ENST00000495692.1,ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3893104:3893281:3897573:3897697:3899317:3899436,	3897574	3897697	3897573	3897573	Splice_Site	G	T	e5-1
UCEC	TCGA-AP-A051-01	MACROD2	ENST00000217246.4,ENST00000378058.3,ENST00000310348.4,ENST00000402914.1	chr20	15843449:15843471:15866408:15866456:15913920:15913983,	15866409	15866456	15866408	15866408	Splice_Site	G	T	e10-1
UCEC	TCGA-D1-A17Q-01	MACROD2	ENST00000217246.4,ENST00000378058.3,ENST00000310348.4,ENST00000402914.1	chr20	15843449:15843471:15866408:15866456:15913920:15913983,	15866409	15866456	15866408	15866408	Splice_Site	G	A	e10-1
UCEC	TCGA-AP-A059-01	RRBP1	ENST00000246043.4,ENST00000377813.1	chr20	17622441:17622564:17623623:17623772:17639240:17639577,	17623624	17623772	17623773	17623773	Splice_Site	C	T	e3-1
UCEC	TCGA-B5-A11E-01	ABHD12	ENST00000339157.5	chr20	25275378:25275666:25282854:25282982:25284185:25284264,25281334:25281520:25282854:25282982:25284185:25284264,	25282855	25282982	25282983	25282983	Splice_Site	C	A	e12-1
UCEC	TCGA-AP-A059-01	ABHD12	ENST00000481556.1	chr20	25289092:25289130:25290081:25290211:25295560:25295606,25289092:25289130:25290081:25290211:25290835:25291108,	25290082	25290211	25290081	25290081	Splice_Site	C	T	e7+1
UCEC	TCGA-AP-A059-01	TPX2	ENST00000340513.4,ENST00000300403.6	chr20	30345209:30345385:30347859:30347982:30354358:30354485,	30347860	30347982	30347859	30347859	Splice_Site	G	T	e2-1
UCEC	TCGA-BS-A0UJ-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34064273:34064420:34065695:34065926:34067055:34067249,	34065696	34065926	34065928	34065928	Splice_Site	T	C	e14+2
UCEC	TCGA-AP-A059-01	PHF20	ENST00000374000.4,ENST00000439301.1,ENST00000339089.6,ENST00000461122.1,ENST00000374012.3	chr20	34430494:34430666:34435271:34435356:34450934:34451170,34430494:34430666:34435271:34435356:34446223:34446303,	34435272	34435356	34435357	34435357	Splice_Site	G	A	e3+1
UCEC	TCGA-A5-A0GP-01	NDRG3	ENST00000349004.1,ENST00000373803.2,ENST00000359675.2,ENST00000540765.1,ENST00000422536.1,ENST00000373773.3	chr20	35309218:35309305:35310920:35310981:35312815:35312878,	35310921	35310981	35310919	35310919	Splice_Site	A	G	e6+2
UCEC	TCGA-AX-A0J1-01	GHRH	ENST00000373614.2,ENST00000237527.3	chr20	35879488:35879634:35882612:35882732:35884796:35884901,	35882613	35882732	35882733	35882733	Splice_Site	C	G	e3-1
UCEC	TCGA-BS-A0UF-01	ARHGAP40	ENST00000243967.4,ENST00000373345.4	chr20	37255638:37255858:37257569:37257645:37258144:37258293,	37257570	37257645	37257569	37257569	Splice_Site	G	T	e3-1
UCEC	TCGA-BS-A0UV-01	ARHGAP40	ENST00000243967.4,ENST00000373345.4	chr20	37258147:37258293:37263262:37263428:37266350:37266442,	37263263	37263428	37263262	37263262	Splice_Site	G	T	e5-1
UCEC	TCGA-D1-A15X-01	WFDC5	ENST00000372789.4	chr20	43739040:43739181:43739275:43739416:43743639:43743803,	43739276	43739416	43739418	43739418	Splice_Site	T	C	e2-2
UCEC	TCGA-BS-A0UF-01	CDH22	ENST00000474438.1,ENST00000537909.1,ENST00000372262.3	chr20	44838945:44839199:44841633:44841827:44845464:44845632,	44841634	44841827	44841828	44841828	Splice_Site	C	T	e5-1
UCEC	TCGA-AP-A0LM-01	ELMO2	ENST00000290246.6,ENST00000425546.1,ENST00000396391.1,ENST00000352077.2,ENST00000450812.1,ENST00000445496.2,ENST00000372176.1,ENST00000488853.1,ENST00000462491.1	chr20	45004306:45004429:45008891:45008942:45012054:45012133,	45008892	45008942	45008943	45008943	Splice_Site	C	A	e9-1
UCEC	TCGA-D1-A17H-01	ZMYND8	ENST00000458360.2	chr20	45858471:45858552:45865069:45865260:45867639:45867882,45858471:45858552:45865069:45865260:45874751:45875261,	45865070	45865260	45865068	45865068	Splice_Site	A	G	e16+2
UCEC	TCGA-D1-A160-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45874751:45875261:45878030:45878183:45891031:45891172,	45878031	45878183	45878029	45878029	Splice_Site	A	G	e13+2
UCEC	TCGA-B5-A11I-01	SULF2	ENST00000361612.4,ENST00000495544.1	chr20	46286411:46287136:46288440:46288474:46290516:46290640,	46288441	46288474	46288475	46288475	Splice_Site	C	T	e18-1
UCEC	TCGA-AP-A0LM-01	DDX27	ENST00000371764.4,ENST00000484427.1	chr20	47859130:47859218:47860165:47860240:47860352:47860614,	47860166	47860240	47860165	47860165	Splice_Site	G	A	e20-1
UCEC	TCGA-D1-A15V-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000411894.1,ENST00000395841.2,ENST00000492498.1,ENST00000429339.1,ENST00000371242.2,ENST00000452119.1	chr20	55929087:55929184:55929767:55929872:55931501:55931568,	55929768	55929872	55929873	55929873	Splice_Site	G	T	e2+1
UCEC	TCGA-D1-A160-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000395841.2,ENST00000371242.2	chr20	55943760:55943868:55948530:55948637:55948718:55948794,	55948531	55948637	55948638	55948638	Splice_Site	G	T	e8+1
UCEC	TCGA-AP-A0LM-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2,ENST00000474749.1	chr20	58456491:58456547:58456999:58457057:58457149:58457220,	58457000	58457057	58457058	58457058	Splice_Site	C	A	e26-1
UCEC	TCGA-D1-A103-01	LAMA5	ENST00000252999.3,ENST00000370691.2	chr20	60885957:60886150:60886217:60886363:60886456:60886592,	60886218	60886363	60886364	60886364	Splice_Site	C	A	e73-1
UCEC	TCGA-D1-A160-01	TPD52L2	ENST00000217121.5,ENST00000352482.4,ENST00000346249.4	chr20	62500717:62500794:62505020:62505169:62514071:62514173,62500717:62500794:62505020:62505169:62507168:62507228,	62505021	62505169	62505020	62505020	Splice_Site	G	A	e3-1
UCEC	TCGA-AP-A059-01	CXADR	ENST00000400165.1	chr21	18919344:18919511:18924066:18924271:18931293:18931449,18919344:18919511:18924066:18924271:18937745:18937805,	18924067	18924271	18924066	18924066	Splice_Site	G	T	e3-1
UCEC	TCGA-AX-A0J1-01	MRPL39	ENST00000352957.4	chr21	26957967:26958066:26961146:26961194:26965123:26965272,	26961147	26961194	26961195	26961195	Splice_Site	C	A	e9-1
UCEC	TCGA-BS-A0UJ-01	N6AMT1	ENST00000460212.1,ENST00000303775.5	chr21	30250513:30250655:30252191:30252275:30254481:30254572,	30252192	30252275	30252190	30252190	Splice_Site	A	G	e4+2
UCEC	TCGA-AP-A059-01	GRIK1	ENST00000399909.1,ENST00000399914.1,ENST00000389125.3,ENST00000327783.4,ENST00000399907.1,ENST00000389124.2,ENST00000309434.7,ENST00000399913.1,ENST00000535441.1	chr21	30927372:30927623:30933944:30934170:30949283:30949501,	30933945	30934170	30934171	30934171	Splice_Site	C	A	e15-1
UCEC	TCGA-AP-A059-01	TIAM1	ENST00000286827.3	chr21	32567539:32567621:32575223:32575328:32582360:32582531,	32575224	32575328	32575329	32575329	Splice_Site	C	A	e9-1
UCEC	TCGA-BS-A0UF-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34921781	34921781	Splice_Site	G	T	e3-1
UCEC	TCGA-BG-A0MQ-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37711071:37711219:37713696:37713844:37716876:37717005,	37713697	37713844	37713696	37713696	Splice_Site	G	A	e6-1
UCEC	TCGA-BS-A0UV-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38269159:38269431:38302550:38302733:38308748:38309692,	38302551	38302733	38302735	38302735	Splice_Site	T	C	e3-2
UCEC	TCGA-BS-A0UV-01	TMPRSS2	ENST00000424093.1	chr21	42861433:42861520:42870045:42870116:42880007:42880019,42866282:42866505:42870045:42870116:42879876:42879909,42866406:42866505:42870045:42870116:42880007:42880019,	42870046	42870116	42870117	42870117	Splice_Site	C	A	e1-1
UCEC	TCGA-BS-A0TA-01	TMPRSS3	ENST00000474596.1,ENST00000433957.2,ENST00000398405.1,ENST00000398397.3,ENST00000380399.1,ENST00000482761.1,ENST00000291532.3	chr21	43802173:43802343:43803141:43803307:43804078:43804122,	43803142	43803307	43803308	43803309	Splice_Site	-	TA	e7-1
UCEC	TCGA-B5-A0JY-01	CBS	ENST00000359624.3	chr21	44473300:44473757:44473971:44474093:44476912:44476997,	44473972	44474093	44474094	44474094	Splice_Site	C	A	e15-1
UCEC	TCGA-AP-A059-01	PDXK	ENST00000470029.1,ENST00000468090.1,ENST00000291565.4,ENST00000398085.3	chr21	45139103:45139262:45153949:45154004:45161547:45161652,	45153950	45154004	45153948	45153948	Splice_Site	A	C	e2-2
UCEC	TCGA-AP-A054-01	SUMO3	ENST00000332859.6,ENST00000479153.1	chr21	46226573:46226955:46228961:46229033:46233890:46234019,	46228962	46229033	46228960	46228960	Splice_Site	A	G	e3+2
UCEC	TCGA-A5-A0GB-01	YBEY	ENST00000468924.1	chr21	47706297:47706329:47706783:47707037:47711247:47711376,	47706784	47707037	47707039	47707040	Splice_Site	-	AAA	e1+2
UCEC	TCGA-B5-A0K0-01	YBEY	ENST00000468924.1	chr21	47706297:47706329:47706783:47707037:47711247:47711376,	47706784	47707037	47707039	47707040	Splice_Site	-	AAAAAA	e1+2
UCEC	TCGA-D1-A1NX-01	YBEY	ENST00000468924.1	chr21	47706297:47706329:47706783:47707037:47711247:47711376,	47706784	47707037	47707039	47707040	Splice_Site	-	AAAAA	e1+2
UCEC	TCGA-D1-A0ZS-01	YBEY	ENST00000468924.1	chr21	47706297:47706329:47706783:47707037:47711247:47711376,	47706784	47707037	47707039	47707040	Splice_Site	-	AAA	e1+2
UCEC	TCGA-BS-A0UV-01	ATP6V1E1	ENST00000253413.5,ENST00000399798.2,ENST00000399796.2,ENST00000413576.1	chr22	18077304:18077382:18080959:18081054:18082792:18082861,	18080960	18081054	18080958	18080958	Splice_Site	A	G	e7+2
UCEC	TCGA-AP-A059-01	BID	ENST00000550946.1,ENST00000342111.5,ENST00000399774.3	chr22	18226572:18226779:18232870:18232940:18257146:18257178,	18232871	18232940	18232941	18232941	Splice_Site	C	A	e2-1
UCEC	TCGA-AP-A059-01	TRMT2A	ENST00000439169.2,ENST00000487668.1	chr22	20100640:20100757:20100954:20101084:20101208:20101321,	20100955	20101084	20101085	20101085	Splice_Site	C	A	e9-1
UCEC	TCGA-AP-A0LE-01	TCN2	ENST00000215838.3,ENST00000405742.3,ENST00000450638.1	chr22	31008871:31009029:31010335:31010488:31011287:31011460,	31010336	31010488	31010334	31010334	Splice_Site	A	G	e4-2
UCEC	TCGA-B5-A0JY-01	DEPDC5	ENST00000266091.3,ENST00000400242.3,ENST00000382105.2,ENST00000400249.2,ENST00000536766.1,ENST00000400246.1	chr22	32149964:32149982:32150847:32150965:32154531:32154610,32150068:32150150:32150847:32150965:32154531:32154610,	32150848	32150965	32150967	32150967	Splice_Site	T	C	e1+2
UCEC	TCGA-BS-A0UL-01	RBFOX2	ENST00000438146.2,ENST00000408983.2	chr22	36177646:36177790:36205826:36206051:36334894:36334945,36177646:36177793:36205826:36206051:36334894:36334945,	36205827	36206051	36205826	36205826	Splice_Site	C	T	e3+1
UCEC	TCGA-AP-A059-01	TNRC6B	ENST00000446273.1,ENST00000454349.2	chr22	40657835:40658177:40666125:40666284:40669428:40669604,40661006:40663040:40666125:40666284:40669428:40669604,	40666126	40666284	40666285	40666285	Splice_Site	G	A	e6+1
UCEC	TCGA-B5-A11N-01	MAPK12	ENST00000467891.1,ENST00000488504.1	chr22	50695027:50695075:50695216:50695393:50695510:50695622,	50695217	50695393	50695216	50695216	Splice_Site	C	A	NULL
UCEC	TCGA-AX-A06H-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000359139.3,ENST00000401672.3,ENST00000427222.2	chr22	50878389:50878478:50879250:50879455:50882294:50882546,	50879251	50879455	50879250	50879250	Splice_Site	G	A	e19-1
UCEC	TCGA-A5-A0GB-01	ARSA	ENST00000216124.5,ENST00000395619.3,ENST00000547307.1,ENST00000453344.2,ENST00000395621.3,ENST00000356098.5,ENST00000547805.1	chr22	51065018:51065188:51065261:51065480:51065593:51065834,	51065262	51065480	51065261	51065261	Splice_Site	C	T	e3+1
UCEC	TCGA-B5-A11N-01	XG	ENST00000426774.1,ENST00000419513.2,ENST00000381174.5	chrX	2692756:2692780:2700106:2700169:2707684:2707747,	2700107	2700169	2700106	2700106	Splice_Site	G	T	e4-1
UCEC	TCGA-B5-A11E-01	FAM9A	ENST00000543214.1,ENST00000381003.3	chrX	8764308:8764423:8766190:8766222:8766399:8766520,	8766191	8766222	8766189	8766189	Splice_Site	A	G	e4+2
UCEC	TCGA-B5-A11R-01	TBL1X	ENST00000380961.1,ENST00000407597.2,ENST00000536365.1,ENST00000424279.1,ENST00000217964.7	chrX	9679650:9679816:9682941:9683043:9684259:9684302,	9682942	9683043	9682941	9682941	Splice_Site	G	A	e14-1
UCEC	TCGA-BS-A0U7-01	AMELX	ENST00000380712.3	chrX	11314898:11314946:11316222:11316264:11316355:11316397,	11316223	11316264	11316222	11316222	Splice_Site	G	A	e3-1
UCEC	TCGA-D1-A0ZN-01	MSL3	ENST00000380692.2	chrX	11777746:11777831:11777911:11777994:11778521:11778617,	11777912	11777994	11777911	11777911	Splice_Site	G	C	e2-1
UCEC	TCGA-AP-A0LM-01	CTPS2	ENST00000380241.3,ENST00000443824.1,ENST00000359276.4	chrX	16627663:16627808:16635272:16635369:16638399:16638455,	16635273	16635369	16635272	16635272	Splice_Site	C	A	e15+1
UCEC	TCGA-D1-A103-01	RPS6KA3	ENST00000379548.4,ENST00000438357.1,ENST00000540702.1,ENST00000457145.1,ENST00000544447.1,ENST00000379565.3,ENST00000492128.1	chrX	20213182:20213263:20222139:20222221:20227405:20227522,	20222140	20222221	20222222	20222222	Splice_Site	C	T	e4-1
UCEC	TCGA-B5-A11E-01	ATP6AP2	ENST00000378438.4,ENST00000423649.1,ENST00000535777.1,ENST00000436783.1	chrX	40440262:40440354:40448237:40448368:40450485:40450617,	40448238	40448368	40448369	40448369	Splice_Site	G	T	e2+1
UCEC	TCGA-B5-A11E-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41069761:41069935:41073820:41073962:41075151:41075905,	41073821	41073962	41073963	41073963	Splice_Site	G	A	e33+1
UCEC	TCGA-AP-A056-01	CASK	ENST00000378166.4,ENST00000378163.1,ENST00000378158.1,ENST00000378168.2,ENST00000361962.4,ENST00000318588.9	chrX	41416284:41416353:41419031:41419100:41420811:41420880,	41419032	41419100	41419030	41419030	Splice_Site	A	G	e18+2
UCEC	TCGA-AX-A0J0-01	MAOA	ENST00000542639.1,ENST00000497485.1	chrX	43517109:43517217:43542760:43542855:43552537:43552675,	43542761	43542855	43542759	43542759	Splice_Site	A	G	e2-2
UCEC	TCGA-B5-A11E-01	MAOB	ENST00000536181.1,ENST00000538942.1,ENST00000378069.4,ENST00000487544.1	chrX	43661418:43661510:43662546:43662651:43698113:43698251,	43662547	43662651	43662652	43662652	Splice_Site	C	G	e4-1
UCEC	TCGA-AP-A059-01	SSX5	ENST00000311798.1	chrX	48054175:48054290:48054442:48054565:48054725:48054794,	48054443	48054565	48054566	48054566	Splice_Site	C	T	e2-1
UCEC	TCGA-AP-A0LM-01	PLP2	ENST00000376327.5	chrX	49028272:49028443:49029475:49029628:49029734:49029830,	49029476	49029628	49029475	49029475	Splice_Site	G	T	e2-1
UCEC	TCGA-D1-A103-01	PRICKLE3	ENST00000540849.1,ENST00000453382.1,ENST00000536904.1,ENST00000376317.3	chrX	49033534:49033551:49034341:49034528:49034620:49034824,	49034342	49034528	49034529	49034529	Splice_Site	C	A	e7-1
UCEC	TCGA-AX-A0J0-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000375695.2	chrX	51640642:51640722:51640890:51640982:51641209:51641289,	51640891	51640982	51640890	51640890	Splice_Site	G	T	e7-1
UCEC	TCGA-B5-A0JY-01	MTMR8	ENST00000462447.1,ENST00000374852.3	chrX	63551436:63551637:63555958:63556008:63557147:63557273,	63555959	63556008	63556009	63556009	Splice_Site	C	A	e10-1
UCEC	TCGA-AP-A051-01	KIF4A	ENST00000374403.3	chrX	69626108:69626204:69626742:69626925:69637737:69637854,	69626743	69626925	69626742	69626742	Splice_Site	G	A	e27-1
UCEC	TCGA-AP-A059-01	NONO	ENST00000418921.1	chrX	70511766:70511822:70514247:70514378:70516414:70516510,	70514248	70514378	70514379	70514379	Splice_Site	G	A	e3+1
UCEC	TCGA-AP-A059-01	NONO	ENST00000276079.8,ENST00000535149.1,ENST00000373856.3,ENST00000373841.1,ENST00000471419.2	chrX	70511766:70511822:70514076:70514378:70516414:70516510,	70514077	70514378	70514379	70514379	Splice_Site	G	A	e3+1
UCEC	TCGA-BS-A0UF-01	OGT	ENST00000488174.1,ENST00000373719.3,ENST00000373701.3	chrX	70782696:70782867:70782979:70783096:70783178:70783349,	70782980	70783096	70782979	70782979	Splice_Site	G	T	e17-1
UCEC	TCGA-B5-A11R-01	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71800476:71801025:71802247:71802448:71804098:71804152,	71802248	71802448	71802449	71802449	Splice_Site	C	T	e31-1
UCEC	TCGA-D1-A174-01	UPRT	ENST00000462237.1,ENST00000526850.1,ENST00000530743.1,ENST00000373383.4,ENST00000474175.1,ENST00000373379.1	chrX	74517325:74517388:74519569:74519731:74520701:74520800,	74519570	74519731	74519569	74519569	Splice_Site	G	T	e5-1
UCEC	TCGA-BS-A0UV-01	POF1B	ENST00000373145.3,ENST00000262753.4	chrX	84614554:84614635:84622696:84622771:84634177:84634496,	84622697	84622771	84622695	84622695	Splice_Site	A	G	e2+2
UCEC	TCGA-BS-A0UV-01	CHM	ENST00000358786.4	chrX	85236740:85236813:85282494:85282561:85302487:85302539,	85282495	85282561	85282494	85282494	Splice_Site	C	T	e2+1
UCEC	TCGA-AX-A06H-01	NRK	ENST00000243300.9,ENST00000428173.2,ENST00000536164.1	chrX	105124191:105124248:105125700:105125772:105132286:105132412,	105125701	105125772	105125773	105125773	Splice_Site	G	A	e4+1
UCEC	TCGA-BS-A0UV-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000394872.2,ENST00000334504.7	chrX	107414039:107414147:107414616:107414691:107415698:107415762,	107414617	107414691	107414692	107414692	Splice_Site	C	T	e33-1
UCEC	TCGA-D1-A103-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000394872.2,ENST00000334504.7	chrX	107417669:107417851:107418319:107418445:107418883:107418972,	107418320	107418445	107418319	107418319	Splice_Site	C	T	e30+1
UCEC	TCGA-AP-A051-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000394872.2,ENST00000334504.7	chrX	107431077:107431257:107431746:107431907:107433621:107433726,	107431747	107431907	107431746	107431746	Splice_Site	C	A	e21+1
UCEC	TCGA-BS-A0V8-01	IL13RA1	ENST00000371666.3	chrX	117900806:117900939:117907841:117907938:117910389:117910474,	117907842	117907938	117907841	117907841	Splice_Site	G	-	e9-1
UCEC	TCGA-B5-A0JY-01	AIFM1	ENST00000535724.1,ENST00000287295.3,ENST00000527892.1,ENST00000533719.1,ENST00000416073.2,ENST00000319908.3	chrX	129274507:129274592:129279453:129279544:129281467:129281598,	129279454	129279544	129279545	129279545	Splice_Site	C	A	e6-1
UCEC	TCGA-AP-A0LM-01	RBMX2	ENST00000305536.6,ENST00000469953.1	chrX	129537775:129537827:129543230:129543360:129545321:129545498,	129543231	129543360	129543230	129543230	Splice_Site	G	T	e4-1
UCEC	TCGA-AX-A0J0-01	FAM122C	ENST00000460216.1	chrX	133979376:133979431:133981412:133981505:133988120:133988213,133979376:133979431:133981412:133981505:133983196:133983258,	133981413	133981505	133981412	133981412	Splice_Site	G	T	e6-1
UCEC	TCGA-AX-A0J0-01	MOSPD1	ENST00000370779.4,ENST00000370777.1,ENST00000489890.1,ENST00000370783.3	chrX	134030918:134031064:134033119:134033195:134033309:134033564,	134033120	134033195	134033118	134033118	Splice_Site	A	G	e2+2
UCEC	TCGA-BS-A0TC-01	ATP11C	ENST00000422228.1	chrX	138865322:138865426:138867384:138867458:138870350:138870502,	138867385	138867458	138867459	138867459	Splice_Site	C	A	e16-1
UCEC	TCGA-AP-A059-01	AFF2	ENST00000370458.1,ENST00000370457.5,ENST00000342251.3	chrX	147582528:147582664:147733519:147733640:147743428:147744289,	147733520	147733640	147733641	147733641	Splice_Site	G	A	e2+1
UCEC	TCGA-BS-A0UV-01	GABRA3	ENST00000535043.1,ENST00000370314.4	chrX	151366104:151366257:151376472:151376616:151393234:151393317,	151376473	151376616	151376472	151376472	Splice_Site	C	T	e6+1
UCEC	TCGA-BS-A0UV-01	IDH3G	ENST00000427365.2	chrX	153055649:153055747:153056250:153056306:153059700:153059780,	153056251	153056306	153056250	153056250	Splice_Site	C	T	e0+1
UCEC	TCGA-BS-A0UJ-01	HCFC1	ENST00000310441.7,ENST00000369984.4	chrX	153224781:153224942:153225252:153225612:153225685:153225865,	153225253	153225612	153225251	153225251	Splice_Site	A	G	e8+2
UCEC	TCGA-BS-A0UV-01	ATP6AP1	ENST00000449556.1,ENST00000491569.1,ENST00000422890.1,ENST00000369762.2	chrX	153657393:153657520:153660175:153660250:153660611:153660722,	153660176	153660250	153660174	153660174	Splice_Site	A	G	e3-2
UCEC	TCGA-D1-A16Y-01	GAB3	ENST00000496390.1,ENST00000424127.2,ENST00000475685.1,ENST00000369575.3	chrX	153906566:153906571:153908408:153908525:153924191:153924294,	153908409	153908525	153908408	153908408	Splice_Site	C	T	e9+1
UCS	TCGA-N9-A4Q3-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579591	7579591	Splice_Site	C	G	.
UCS	TCGA-NA-A4R0-01	DCTN5	ENST00000563998.1,ENST00000568589.1	chr16	23652849:23652911:23654275:23654344:23669827:23669946,	23654276	23654344	23654275	23654275	Splice_Site	G	C	.
UCS	TCGA-NA-A5I1-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3	chr6	38941436:38941589:38942149:38942305:38950121:38950238,	38942150	38942305	38942307	38942307	Splice_Site	T	C	.
UCS	TCGA-ND-A4WC-01	FAM45A	ENST00000487888.1,ENST00000361432.2	chr10	120871360:120871440:120877030:120877179:120879852:120879964,	120877031	120877179	120877030	120877030	Splice_Site	G	A	.
UCS	TCGA-ND-A4WC-01	ABI1	ENST00000376142.2,ENST00000346832.5,ENST00000355394.4	chr10	27047990:27048167:27052808:27052889:27054146:27054247,	27052809	27052889	27052890	27052890	Splice_Site	C	A	.
UCS	TCGA-ND-A4WC-01	DLGAP5	ENST00000395425.2,ENST00000247191.2	chr14	55621334:55621524:55625239:55625459:55629688:55629793,	55625240	55625459	55625460	55625460	Splice_Site	C	T	.
UCS	TCGA-ND-A4WC-01	CEP95	ENST00000553956.2,ENST00000577960.1,ENST00000556440.2,ENST00000553412.1	chr17	62517519:62517645:62518819:62519013:62521887:62521952,	62518820	62519013	62518818	62518818	Splice_Site	A	C	.
UCS	TCGA-ND-A4WC-01	KDSR	ENST00000589592.1,ENST00000326575.5,ENST00000406396.3,ENST00000586791.1	chr18	60998883:60999134:61002489:61002591:61006032:61006116,	61002490	61002591	61002592	61002592	Splice_Site	C	T	.
UCS	TCGA-ND-A4WC-01	ZNF420	ENST00000587029.1,ENST00000337995.3,ENST00000304239.7,ENST00000589245.1	chr19	37579940:37580029:37581896:37582023:37586932:37587017,37579940:37580029:37581896:37582023:37618029:37618041,	37581897	37582023	37581896	37581896	Splice_Site	G	T	.
UCS	TCGA-ND-A4WC-01	LYL1	ENST00000590974.1	chr19	13211503:13211562:13211650:13211862:13213344:13213681,	13211651	13211862	13211649	13211649	Splice_Site	A	G	.
UCS	TCGA-ND-A4WC-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467482	58467482	Splice_Site	C	A	.
UCS	TCGA-ND-A4WC-01	PDE9A	ENST00000490803.1,ENST00000398225.3,ENST00000398232.3,ENST00000495343.1,ENST00000328862.6,ENST00000291539.6	chr21	44119077:44119121:44152179:44152234:44153465:44153536,44151879:44152059:44152179:44152234:44153465:44153536,	44152180	44152234	44152236	44152236	Splice_Site	T	C	.
UCS	TCGA-ND-A4WC-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93603571:93603740:93605179:93605347:93611776:93611966,	93605180	93605347	93605179	93605179	Splice_Site	C	T	.
UCS	TCGA-ND-A4WC-01	CYTL1	ENST00000509419.1	chr4	5016870:5016961:5018861:5018906:5021019:5021164,	5018862	5018906	5018861	5018861	Splice_Site	C	T	.
UCS	TCGA-ND-A4WC-01	EFNA5	ENST00000509503.1	chr5	106723406:106723472:106762917:106763210:107006189:107006328,	106762918	106763210	106763211	106763211	Splice_Site	C	A	.
UCS	TCGA-ND-A4WC-01	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52284432:52284641:52287156:52287291:52320626:52321539,	52287157	52287291	52287292	52287292	Splice_Site	C	T	.
UCS	TCGA-ND-A4WC-01	ATP6V0D2	ENST00000285393.3	chr8	87153678:87153758:87155105:87155183:87162340:87162517,	87155106	87155183	87155104	87155104	Splice_Site	A	C	.
UCS	TCGA-ND-A4WC-01	ADAMTSL1	ENST00000380566.4,ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18635940:18636015:18639251:18639409:18657636:18657748,	18639252	18639409	18639251	18639251	Splice_Site	G	T	.
UCS	TCGA-QN-A5NN-01	GP2	ENST00000573897.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20329723:20329752:20330941:20331090:20331583:20331652,	20330942	20331090	20331092	20331092	Splice_Site	T	C	.
UCS	TCGA-N5-A4RT-01	DHRS7B	ENST00000578426.1	chr17	21030267:21030304:21075330:21075509:21081545:21081655,21030267:21030304:21075330:21075509:21086906:21086976,	21075331	21075509	21075510	21075510	Splice_Site	G	T	.
UCS	TCGA-N7-A59B-01	DNMT3B	ENST00000328111.2	chr20	31380431:31380576:31381341:31381401:31383214:31383340,	31381342	31381401	31381340	31381340	Splice_Site	A	G	.
UCS	TCGA-N5-A4RN-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881414	48881414	Splice_Site	A	G	.
UCS	TCGA-N6-A4VG-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578290	7578290	Splice_Site	C	T	.
UCS	TCGA-N7-A4Y8-01	BMS1	ENST00000374518.5	chr10	43316381:43316440:43317509:43317632:43318565:43318713,	43317510	43317632	43317508	43317508	Splice_Site	A	G	.
UCS	TCGA-N7-A4Y8-01	ACTA1	ENST00000366683.2	chr1	229568404:229568627:229568733:229568874:229569750:229569841,	229568734	229568874	229568733	229568733	Splice_Site	C	A	.
UCS	TCGA-N5-A4R8-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578291	7578291	Splice_Site	T	G	.
UCS	TCGA-N5-A4RF-01	WDR63	ENST00000294664.6,ENST00000464801.1	chr1	85551513:85551713:85555798:85555915:85559140:85559331,	85555799	85555915	85555917	85555918	Splice_Site	-	A	.
UCS	TCGA-N9-A4Q7-01	COG4	ENST00000323786.5,ENST00000562200.1,ENST00000524584.1,ENST00000393612.4,ENST00000482252.1,ENST00000534772.1,ENST00000530314.1	chr16	70546276:70546335:70548237:70548412:70549770:70549943,70546276:70546335:70548237:70548412:70551528:70551643,	70548238	70548412	70548413	70548413	Splice_Site	C	T	.
UCS	TCGA-N9-A4Q7-01	EIF1	ENST00000469257.1,ENST00000591776.1	chr17	39845241:39845321:39846029:39846193:39846339:39846441,	39846030	39846193	39846029	39846029	Splice_Site	G	C	.
UCS	TCGA-N8-A4PQ-01	MPHOSPH9	ENST00000545556.2	chr12	123699290:123699381:123702945:123703046:123705918:123706270,	123702946	123703046	123703047	123703047	Splice_Site	C	A	.
UCS	TCGA-N8-A4PQ-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000302373.4,ENST00000539336.2,ENST00000606320.1,ENST00000302349.5	chr12	123699290:123699381:123702922:123703046:123705918:123706270,	123702923	123703046	123703047	123703047	Splice_Site	C	A	.
UCS	TCGA-N7-A4Y0-01	P2RX2	ENST00000389110.3,ENST00000536121.1,ENST00000542301.1,ENST00000348800.5,ENST00000343948.4,ENST00000535910.1	chr12	133196043:133196160:133196264:133196336:133196429:133196505,	133196265	133196336	133196264	133196264	Splice_Site	G	-	.
UCS	TCGA-N7-A4Y0-01	AP1G2	ENST00000557162.1,ENST00000397120.3,ENST00000308724.5,ENST00000554977.1,ENST00000535852.2	chr14	24033254:24033368:24033541:24033597:24033770:24033840,	24033542	24033597	24033540	24033540	Splice_Site	A	G	.
UCS	TCGA-N7-A4Y0-01	CACNB1	ENST00000577582.1	chr17	37340577:37340636:37341036:37341117:37342748:37342825,	37341037	37341117	37341119	37341120	Splice_Site	-	G	.
UCS	TCGA-N7-A4Y0-01	CXXC1	ENST00000590901.1,ENST00000412036.2,ENST00000285106.6,ENST00000586837.1,ENST00000589940.1,ENST00000591474.1	chr18	47811590:47811617:47811694:47811721:47812118:47812298,	47811695	47811721	47811722	47811722	Splice_Site	C	A	.
UCS	TCGA-N7-A4Y0-01	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1,ENST00000540597.1	chr19	55496414:55496585:55497518:55497683:55501389:55501464,	55497519	55497683	55497518	55497518	Splice_Site	G	T	.
UCS	TCGA-N7-A4Y0-01	GRIK2	ENST00000318991.6,ENST00000369134.4,ENST00000413795.1,ENST00000421544.1,ENST00000369138.1	chr6	102337514:102337738:102372475:102372594:102376289:102376507,	102372476	102372594	102372596	102372596	Splice_Site	T	C	.
UCS	TCGA-N7-A4Y0-01	ARSD	ENST00000381154.1	chrX	2827857:2828020:2828699:2828834:2833596:2833733,	2828700	2828834	2828698	2828698	Splice_Site	A	G	.
UCS	TCGA-N8-A4PO-01	ZSWIM7	ENST00000490395.1,ENST00000584519.1,ENST00000474716.1,ENST00000460315.1,ENST00000491631.1,ENST00000472495.1,ENST00000460252.1,ENST00000399280.2,ENST00000475498.1,ENST00000497719.1,ENST00000399277.1,ENST00000495825.2,ENST00000476496.1	chr17	15881391:15881477:15884353:15884458:15890113:15890200,15881391:15881477:15884353:15884458:15890579:15890682,	15884354	15884458	15884460	15884460	Splice_Site	T	A	.
UCS	TCGA-N7-A4Y5-01	ARHGAP35	ENST00000595822.1	chr19	47440576:47440665:47491245:47492932:47502560:47502666,	47491246	47492932	47491244	47491249	Splice_Site	AGGACT	-	p.1276_splice
UVM	TCGA-YZ-A984-01	TYRO3	ENST00000560227.1,ENST00000263798.3,ENST00000559066.1	chr15	41857223:41857339:41859557:41859735:41860414:41860463,	41859558	41859735	41859736	41859736	Splice_Site	G	C	.
UVM	TCGA-YZ-A985-01	EGF	ENST00000509793.1	chr4	110866228:110866431:110882022:110882145:110883018:110883141,	110882023	110882145	110882146	110882146	Splice_Site	G	A	.
UVM	TCGA-YZ-A985-01	MAP2K3	ENST00000342679.4,ENST00000496046.1,ENST00000583508.1	chr17	21188133:21188281:21201724:21201791:21202189:21202238,	21201725	21201791	21201792	21201792	Splice_Site	G	A	.
UVM	TCGA-VD-AA8Q-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596669	136596669	Splice_Site	C	T	.
UVM	TCGA-VD-A8KF-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301047	179301047	Splice_Site	C	T	.
UVM	TCGA-VD-A8KA-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300871	179300871	Splice_Site	C	T	.
UVM	TCGA-WC-A884-01	YBEY	ENST00000468924.1	chr21	47706297:47706329:47706783:47707037:47711247:47711376,	47706784	47707037	47707039	47707040	Splice_Site	-	AAAAA	.
UVM	TCGA-WC-A884-01	FRG1	ENST00000533157.1,ENST00000514482.1,ENST00000531991.2,ENST00000226798.4	chr4	190873316:190873442:190874222:190874280:190876191:190876305,	190874223	190874280	190874281	190874281	Splice_Site	G	T	.
UVM	TCGA-WC-A883-01	JAK1	ENST00000342505.4	chr1	65334993:65335157:65339052:65339206:65344707:65344746,	65339053	65339206	65339052	65339052	Splice_Site	C	T	.
UVM	TCGA-V4-A9EL-01	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088408	10088408	Splice_Site	G	T	.
UVM	TCGA-VD-A8KE-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899930	163899930	Splice_Site	T	A	.
UVM	TCGA-VD-A8KE-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300871	179300871	Splice_Site	C	T	.
UVM	TCGA-VD-AA8P-01	ZNF446	ENST00000594369.1,ENST00000596341.1	chr19	58989463:58989548:58991009:58991094:58991296:58991386,	58991010	58991094	58991009	58991009	Splice_Site	G	C	.
UVM	TCGA-VD-AA8P-01	SLC13A5	ENST00000573648.1	chr17	6590859:6590985:6594097:6594259:6596362:6596481,6589415:6589657:6594097:6594259:6596362:6596481,	6594098	6594259	6594096	6594096	Splice_Site	A	T	.
UVM	TCGA-VD-AA8P-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865875	41865875	Splice_Site	A	T	.
UVM	TCGA-VD-A8KJ-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301047	179301047	Splice_Site	C	T	.
UVM	TCGA-VD-A8KJ-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300871	179300871	Splice_Site	C	T	.
UVM	TCGA-V4-A9ET-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306336	179306336	Splice_Site	C	T	.
ACC	TCGA-PK-A5HB-01	TCERG1	ENST00000549332.1,ENST00000394421.2,ENST00000296702.5	chr5	145826908:145826971:145834618:145834844:145836745:145836898,	145834619	145834844	145834680	145834680	Nonsense_Mutation	C	T	p.R41X
ACC	TCGA-PK-A5HB-01	RIMS1	ENST00000521978.1	chr6	72993749:72993821:73000381:73000564:73001636:73001749,	73000382	73000564	73000437	73000437	Nonsense_Mutation	C	T	p.Q1204X
ACC	TCGA-PK-A5HB-01	AGK	ENST00000494688.1,ENST00000355413.4,ENST00000535825.1,ENST00000473247.1	chr7	141321531:141321601:141333700:141333780:141336759:141336817,	141333701	141333780	141333740	141333740	Nonsense_Mutation	C	T	p.R210X
ACC	TCGA-PK-A5HB-01	GSN	ENST00000432226.1,ENST00000341272.2,ENST00000373823.3	chr9	124043788:124043840:124064240:124064445:124065188:124065343,	124064241	124064445	124064309	124064309	Nonsense_Mutation	G	A	p.W71X
ACC	TCGA-PK-A5HB-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79581401	79581401	Nonsense_Mutation	C	T	p.W947X
ACC	TCGA-PK-A5HB-01	DEAF1	ENST00000382409.3	chr11	684897:684963:686857:686997:687910:687936,	686858	686997	686974	686974	Nonsense_Mutation	G	A	p.Q230X
ACC	TCGA-PK-A5HB-01	KPNA3	ENST00000261667.3	chr13	50280403:50280508:50283707:50283836:50285026:50285158,	50283708	50283836	50283733	50283733	Nonsense_Mutation	G	T	p.S336X
ACC	TCGA-OR-A5LB-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176683951:176684152:176686989:176687169:176694562:176694719,	176686990	176687169	176687121	176687121	Nonsense_Mutation	C	T	p.R1700X
ACC	TCGA-OR-A5LB-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706547	33706547	Nonsense_Mutation	G	A	p.R142X
ACC	TCGA-OR-A5LB-01	CHEK2	ENST00000439200.1,ENST00000382580.2	chr22	29121230:29121355:29130390:29130715:29137756:29137771,29126443:29126536:29130390:29130715:29137756:29137771,	29130391	29130715	29130427	29130427	Nonsense_Mutation	G	A	p.R95X
ACC	TCGA-OR-A5J5-01	SMARCD3	ENST00000262188.8,ENST00000356800.2,ENST00000485592.1,ENST00000392811.2	chr7	150937510:150937608:150938577:150938739:150938962:150939064,	150938578	150938739	150938652	150938652	Nonsense_Mutation	G	A	p.Q289X
ACC	TCGA-OR-A5J5-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000602997.1,ENST00000605781.1,ENST00000380554.3	chr10	5138601:5138769:5139625:5139742:5140993:5141071,	5139626	5139742	5139659	5139659	Nonsense_Mutation	C	T	p.R96X
ACC	TCGA-OR-A5J5-01	BMS1	ENST00000374518.5	chr10	43282615:43282695:43285770:43285959:43287074:43287217,	43285771	43285959	43285924	43285924	Nonsense_Mutation	C	T	p.R201X
ACC	TCGA-OR-A5J5-01	PHLDB1	ENST00000356063.5,ENST00000527259.1,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118486755:118486926:118495649:118495775:118498020:118498112,	118495650	118495775	118495742	118495742	Nonsense_Mutation	C	T	p.R150X
ACC	TCGA-OR-A5J5-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118633920:118634015:118635916:118636063:118638930:118639060,	118635917	118636063	118635947	118635947	Nonsense_Mutation	G	A	p.R206X
ACC	TCGA-OR-A5JF-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174814615	174814615	Nonsense_Mutation	C	T	p.Q27X
ACC	TCGA-OR-A5KB-01	PLA2G5	ENST00000486277.1,ENST00000375108.3,ENST00000489871.1	chr1	20412575:20412720:20416281:20416388:20417060:20417273,	20416282	20416388	20416346	20416346	Nonsense_Mutation	C	T	p.Q84X
ACC	TCGA-OR-A5KB-01	PDE4DIP	ENST00000530062.1	chr1	144854164:144854211:144854517:144854656:144855739:144855883,144852393:144852499:144854517:144854656:144855739:144855883,	144854518	144854656	144854656	144854656	Nonsense_Mutation	C	A	p.G2272X
ACC	TCGA-OR-A5KB-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32474675:32476670:32477487:32477748:32481843:32481962,	32477488	32477748	32477523	32477523	Nonsense_Mutation	C	T	p.W76X
ACC	TCGA-OR-A5KB-01	ST6GAL2	ENST00000361803.3	chr2	107418063:107418319:107423101:107423405:107446521:107446535,	107423102	107423405	107423334	107423334	Nonsense_Mutation	C	A	p.E464X
ACC	TCGA-OR-A5KB-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107715	168107715	Nonsense_Mutation	T	G	p.Y3271X
ACC	TCGA-OR-A5KB-01	NDST4	ENST00000504854.1,ENST00000264363.2	chr4	115769370:115769494:115773880:115773977:115791923:115792106,	115773881	115773977	115773935	115773935	Nonsense_Mutation	C	A	p.E588X
ACC	TCGA-OR-A5KB-01	CDH12	ENST00000504376.2,ENST00000382254.1,ENST00000517378.1	chr5	21842269:21842437:21854779:21854899:21975199:21975494,	21854780	21854899	21854885	21854885	Nonsense_Mutation	G	A	p.Q181X
ACC	TCGA-OR-A5KB-01	FAM81B	ENST00000507832.1,ENST00000503361.1,ENST00000283357.5	chr5	94764382:94764436:94772503:94772610:94782265:94782393,	94772504	94772610	94772570	94772570	Nonsense_Mutation	C	T	p.Q285X
ACC	TCGA-OR-A5KB-01	EBF1	ENST00000519739.1,ENST00000313708.6,ENST00000519890.1,ENST00000522192.1,ENST00000518836.1,ENST00000380654.4	chr5	158134986:158135181:158139161:158139341:158139977:158140155,	158139162	158139341	158139314	158139314	Nonsense_Mutation	G	T	p.S466X
ACC	TCGA-OR-A5KB-01	DENND2A	ENST00000537639.1,ENST00000496613.1,ENST00000275884.6,ENST00000492720.1,ENST00000461883.1	chr7	140268562:140268613:140269444:140269538:140273607:140273805,	140269445	140269538	140269463	140269463	Nonsense_Mutation	C	A	p.E508X
ACC	TCGA-OR-A5KB-01	ZNF467	ENST00000302017.3	chr7	149461270:149461767:149466178:149466289:149467528:149467645,149463266:149463328:149466178:149466289:149467528:149467645,	149466179	149466289	149466284	149466284	Nonsense_Mutation	C	A	p.E53X
ACC	TCGA-OR-A5KB-01	DOCK5	ENST00000276440.7,ENST00000481100.1	chr8	25042379:25042466:25101189:25101273:25126360:25126401,	25101190	25101273	25101270	25101270	Nonsense_Mutation	G	T	p.E42X
ACC	TCGA-OR-A5KB-01	PREX2	ENST00000288368.4	chr8	69058443:69058587:69069556:69069671:69103956:69104023,	69069557	69069671	69069640	69069640	Nonsense_Mutation	G	T	p.E1439X
ACC	TCGA-OR-A5KB-01	OLFML2A	ENST00000373580.3	chr9	127539549:127539639:127549253:127549517:127557302:127557410,	127549254	127549517	127549290	127549290	Nonsense_Mutation	G	T	p.E43X
ACC	TCGA-OR-A5KB-01	PARG	ENST00000402038.3	chr10	51028210:51028339:51040848:51040954:51049995:51050104,	51040849	51040954	51040918	51040918	Nonsense_Mutation	C	A	p.E860X
ACC	TCGA-OR-A5KB-01	ECHS1	ENST00000368547.3	chr10	135178202:135178229:135179479:135179599:135180392:135180497,	135179480	135179599	135179540	135179540	Nonsense_Mutation	C	A	p.E227X
ACC	TCGA-OR-A5KB-01	FAM160A2	ENST00000265978.4,ENST00000524416.1,ENST00000449352.2	chr11	6244309:6244468:6244839:6245478:6245608:6245937,	6244840	6245478	6245247	6245247	Nonsense_Mutation	C	A	p.E124X
ACC	TCGA-OR-A5KB-01	INSC	ENST00000379554.3,ENST00000424273.1,ENST00000525218.1,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15170675:15170776:15197286:15197632:15198656:15198709,	15197287	15197632	15197588	15197588	Nonsense_Mutation	G	T	p.E167X
ACC	TCGA-OR-A5KB-01	VTI1B	ENST00000216456.6,ENST00000554659.1	chr14	68117980:68118198:68120153:68120215:68123132:68123306,	68120154	68120215	68120200	68120200	Nonsense_Mutation	C	A	p.E186X
ACC	TCGA-OR-A5KB-01	CERS3	ENST00000394113.1,ENST00000284382.4,ENST00000538112.2	chr15	100942715:100943070:100996097:100996251:101009582:101009689,	100996098	100996251	100996194	100996194	Nonsense_Mutation	G	T	p.Y301X
ACC	TCGA-OR-A5KB-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331586	20331586	Nonsense_Mutation	C	A	p.E289X
ACC	TCGA-OR-A5KB-01	ACSM2A	ENST00000575558.1,ENST00000417235.2	chr16	20471428:20471613:20476838:20477049:20480833:20480867,20462932:20463003:20476838:20477049:20480833:20480867,	20476839	20477049	20476935	20476935	Nonsense_Mutation	C	T	p.Q92X
ACC	TCGA-OR-A5KB-01	NFIC	ENST00000589123.1,ENST00000590282.1,ENST00000346156.5,ENST00000589537.1,ENST00000586919.1,ENST00000341919.3,ENST00000395111.3,ENST00000443272.2	chr19	3435080:3435205:3449011:3449137:3452479:3452664,	3449012	3449137	3449047	3449047	Nonsense_Mutation	A	T	p.K332X
ACC	TCGA-OR-A5KB-01	BTK	ENST00000372880.1,ENST00000308731.7	chrX	100614280:100614335:100615075:100615138:100615555:100615743,	100615076	100615138	100615077	100615077	Nonsense_Mutation	C	A	p.E280X
ACC	TCGA-OR-A5KB-01	PNCK	ENST00000488994.1,ENST00000370142.1,ENST00000466074.1,ENST00000393831.2,ENST00000447676.2,ENST00000370150.1,ENST00000340888.3,ENST00000370145.4	chrX	152936410:152936451:152936532:152936645:152936739:152936815,	152936533	152936645	152936621	152936621	Nonsense_Mutation	G	T	p.Y296X
ACC	TCGA-OR-A5L2-01	TCF7L2	ENST00000369395.1,ENST00000355717.4,ENST00000542695.1,ENST00000369397.4,ENST00000352065.5	chr10	114710965:114711032:114711241:114711366:114724314:114724383,114710965:114711032:114711241:114711366:114799783:114799885,	114711242	114711366	114711350	114711350	Nonsense_Mutation	C	A	p.S122X
ACC	TCGA-OR-A5L2-01	PTPN6	ENST00000542277.1,ENST00000543115.1,ENST00000536521.1,ENST00000541698.1,ENST00000318974.9,ENST00000538715.1,ENST00000456013.1	chr12	7055872:7055902:7060771:7060894:7061145:7061340,7055872:7055902:7060771:7060894:7061275:7061340,7060537:7060683:7060771:7060894:7061145:7061340,	7060772	7060894	7060782	7060782	Nonsense_Mutation	C	T	p.R9X
ACC	TCGA-OR-A5L2-01	PTPN6	ENST00000538318.1	chr12	7055872:7055902:7060667:7060894:7061145:7061340,	7060668	7060894	7060782	7060782	Nonsense_Mutation	C	T	p.R9X
ACC	TCGA-OR-A5L2-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000569991.1,ENST00000394747.1,ENST00000567385.1,ENST00000394748.1	chr16	48258258:48258340:48261716:48261875:48264347:48264484,	48261717	48261875	48261750	48261750	Nonsense_Mutation	G	C	p.S121X
ACC	TCGA-OR-A5K8-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288624	33288624	Nonsense_Mutation	G	A	p.Q322X
ACC	TCGA-OR-A5KW-01	MEN1	ENST00000377316.2,ENST00000337652.1,ENST00000377326.3,ENST00000377313.1,ENST00000443283.1,ENST00000394374.2,ENST00000377321.1,ENST00000312049.6,ENST00000315422.4,ENST00000394376.1	chr11	64573106:64573242:64573703:64573840:64574482:64574570,	64573704	64573840	64573817	64573817	Nonsense_Mutation	G	C	p.Y317X
ACC	TCGA-OR-A5KW-01	DNAH9	ENST00000608377.1,ENST00000396001.2,ENST00000262442.4,ENST00000454412.2	chr17	11837196:11837388:11840668:11840839:11845619:11845802,	11840669	11840839	11840813	11840813	Nonsense_Mutation	G	T	p.G4212X
ACC	TCGA-OR-A5JX-01	BTN3A1	ENST00000414912.2	chr6	26406136:26406484:26408054:26408180:26409760:26409961,	26408055	26408180	26408132	26408132	Nonsense_Mutation	A	T	p.R223X
ACC	TCGA-OR-A5JX-01	BTN3A1	ENST00000082468.7,ENST00000425234.2,ENST00000289361.6,ENST00000476549.2	chr6	26406136:26406484:26407898:26408180:26409760:26409961,	26407899	26408180	26408132	26408132	Nonsense_Mutation	A	T	p.R223X
ACC	TCGA-OR-A5JK-01	PGAP1	ENST00000470179.1,ENST00000354764.4,ENST00000423035.1	chr2	197706062:197706096:197707444:197707549:197708611:197708799,	197707445	197707549	197707448	197707448	Nonsense_Mutation	G	C	p.S876X
ACC	TCGA-OR-A5K0-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939349	76939349	Nonsense_Mutation	T	A	p.K467X
ACC	TCGA-OR-A5L5-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000350210.2	chr1	155218195:155218264:155220066:155220612:155220885:155220955,	155220067	155220612	155220208	155220208	Nonsense_Mutation	G	A	p.R457X
ACC	TCGA-OR-A5L5-01	FAM189B	ENST00000368366.1	chr1	155218195:155218264:155220066:155220720:155220885:155220955,	155220067	155220720	155220208	155220208	Nonsense_Mutation	G	A	p.R457X
ACC	TCGA-OR-A5JA-01	ITGA4	ENST00000397033.2,ENST00000233573.6	chr2	182360097:182360143:182360509:182360664:182363349:182363504,	182360510	182360664	182360586	182360586	Nonsense_Mutation	G	T	p.E488X
ACC	TCGA-OR-A5JA-01	ACSL3	ENST00000392066.3	chr2	223752547:223752606:223773450:223773868:223781036:223781214,	223773451	223773868	223773830	223773830	Nonsense_Mutation	G	T	p.E114X
ACC	TCGA-OR-A5JA-01	ARHGEF38	ENST00000265154.2,ENST00000420470.2	chr4	106510404:106510592:106534540:106534664:106552054:106552202,	106534541	106534664	106534599	106534599	Nonsense_Mutation	C	A	p.S148X
ACC	TCGA-OR-A5JA-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000521759.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170648761:170648844:170667931:170668146:170669685:170669824,	170667932	170668146	170668124	170668124	Nonsense_Mutation	C	A	p.S872X
ACC	TCGA-OR-A5JA-01	RMDN1	ENST00000519966.1,ENST00000430676.2,ENST00000406452.3	chr8	87500780:87500868:87519223:87519341:87520720:87520848,	87519224	87519341	87519275	87519275	Nonsense_Mutation	C	A	p.E66X
ACC	TCGA-OR-A5JA-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845627	63845627	Nonsense_Mutation	G	T	p.E456X
ACC	TCGA-OR-A5JA-01	RSL1D1	ENST00000570767.1,ENST00000542106.1,ENST00000571133.1,ENST00000396503.3,ENST00000355674.5	chr16	11935763:11935857:11940357:11940459:11940551:11940676,	11940358	11940459	11940360	11940360	Nonsense_Mutation	G	T	p.C211X
ACC	TCGA-OR-A5JA-01	KCTD13	ENST00000308768.5	chr16	29916332:29916472:29917813:29918429:29922298:29922494,	29917814	29918429	29918291	29918291	Nonsense_Mutation	C	A	p.E298X
ACC	TCGA-OR-A5JA-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579521	7579521	Nonsense_Mutation	C	A	p.E56X
ACC	TCGA-OR-A5JA-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601155	28601155	Nonsense_Mutation	G	A	p.R236X
ACC	TCGA-OR-A5JA-01	TAF1	ENST00000423759.1,ENST00000276072.3	chrX	70595016:70595136:70596799:70597041:70597452:70597671,	70596800	70597041	70596893	70596893	Nonsense_Mutation	C	A	p.S209X
ACC	TCGA-OR-A5JA-01	TAF1	ENST00000373790.4,ENST00000449580.1	chrX	70595016:70595136:70596862:70597041:70597452:70597671,	70596863	70597041	70596893	70596893	Nonsense_Mutation	C	A	p.S209X
ACC	TCGA-OR-A5LJ-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453329	195453329	Nonsense_Mutation	C	T	p.R448X
ACC	TCGA-OR-A5LJ-01	RNF44	ENST00000504160.1	chr5	175958463:175958631:175959004:175959130:175959366:175959517,	175959005	175959130	175959061	175959061	Nonsense_Mutation	G	A	p.R81X
ACC	TCGA-OR-A5LJ-01	RNF44	ENST00000274811.4	chr5	175958463:175958631:175959004:175959194:175959366:175959517,	175959005	175959194	175959061	175959061	Nonsense_Mutation	G	A	p.R81X
ACC	TCGA-OR-A5LJ-01	RNF44	ENST00000537487.1,ENST00000513029.1	chr5	175958463:175958631:175959004:175959133:175959366:175959517,	175959005	175959133	175959061	175959061	Nonsense_Mutation	G	A	p.R81X
ACC	TCGA-OR-A5LJ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
ACC	TCGA-OR-A5LT-01	MORN5	ENST00000373764.3	chr9	124929046:124929194:124936774:124936906:124962163:124962362,124931939:124932035:124936774:124936906:124962163:124962362,	124936775	124936906	124936830	124936830	Nonsense_Mutation	C	G	p.Y121X
ACC	TCGA-OR-A5LT-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449577	85449577	Nonsense_Mutation	C	T	p.R336X
ACC	TCGA-OR-A5K5-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998369	144998369	Nonsense_Mutation	T	A	p.K2047X
ACC	TCGA-OR-A5K1-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27877423	27877423	Nonsense_Mutation	C	A	p.G402X
ACC	TCGA-P6-A5OG-01	ARRDC3	ENST00000508948.1,ENST00000265138.3,ENST00000503192.1	chr5	90671343:90671430:90672437:90672585:90674510:90674592,	90672438	90672585	90672527	90672527	Nonsense_Mutation	C	A	p.E141X
ACC	TCGA-P6-A5OG-01	NAALAD2	ENST00000534061.1	chr11	89891312:89891406:89892406:89892505:89896116:89896202,	89892407	89892505	89892474	89892474	Nonsense_Mutation	G	T	p.G320X
ACC	TCGA-P6-A5OG-01	ARHGEF40	ENST00000554514.1,ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000555232.1,ENST00000553709.1	chr14	21550989:21551076:21551993:21552209:21552911:21553082,	21551994	21552209	21552141	21552141	Nonsense_Mutation	C	T	p.Q1241X
ACC	TCGA-P6-A5OG-01	EXD2	ENST00000312994.5,ENST00000409242.1	chr14	69670633:69670717:69676140:69676520:69695532:69695789,69658551:69658756:69676140:69676520:69695532:69695789,	69676141	69676520	69676281	69676281	Nonsense_Mutation	C	T	p.R32X
ACC	TCGA-OR-A5KT-01	TMOD2	ENST00000435126.2	chr15	52069128:52069215:52073240:52073371:52090393:52090537,	52073241	52073371	52073255	52073255	Nonsense_Mutation	G	T	p.E170X
ACC	TCGA-OR-A5KT-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939322	76939322	Nonsense_Mutation	G	A	p.Q476X
ACC	TCGA-OR-A5JP-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	21135134:21135260:21250877:21251000:21392398:21392494,	21250878	21251000	21250963	21250963	Nonsense_Mutation	C	A	p.C504X
ACC	TCGA-PA-A5YG-01	FRMD4A	ENST00000378503.1,ENST00000358621.4,ENST00000357447.2	chr10	13696415:13696512:13698635:13699522:13701322:13701490,	13698636	13699522	13699100	13699100	Nonsense_Mutation	G	T	p.S830X
ACC	TCGA-OR-A5J8-01	SMARCAL1	ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217329319:217329390:217332666:217332769:217339991:217340174,	217332667	217332769	217332761	217332761	Nonsense_Mutation	G	T	p.E746X
ACC	TCGA-OR-A5J8-01	SENP6	ENST00000370010.2,ENST00000541192.1,ENST00000370014.3,ENST00000503501.1,ENST00000447266.2	chr6	76423228:76423297:76423390:76423541:76425100:76425593,	76423391	76423541	76423518	76423518	Nonsense_Mutation	C	T	p.Q1036X
ACC	TCGA-OR-A5J8-01	PHTF2	ENST00000470215.1,ENST00000307305.8,ENST00000422959.2,ENST00000248550.7,ENST00000416283.2	chr7	77572016:77572103:77578994:77579150:77580933:77581029,	77578995	77579150	77579101	77579101	Nonsense_Mutation	C	A	p.S655X
ACC	TCGA-OR-A5J8-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000580732.2	chr18	19034394:19034524:19052991:19053172:19057124:19057317,	19052992	19053172	19053018	19053018	Nonsense_Mutation	G	T	p.E737X
ACC	TCGA-OR-A5KO-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574012	7574012	Nonsense_Mutation	C	A	p.E339X
ACC	TCGA-OR-A5JB-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145145583:145147595:145153978:145154159:145155867:145157837,	145153979	145154159	145153988	145153988	Nonsense_Mutation	C	A	p.E1020X
ACC	TCGA-OR-A5JB-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19299226:19299285:19300184:19300329:19305349:19305525,	19300185	19300329	19300261	19300261	Nonsense_Mutation	G	T	p.E415X
ACC	TCGA-OR-A5JB-01	TMPO	ENST00000393053.2	chr12	98938728:98938839:98940136:98940225:98941350:98941479,98931252:98931350:98940136:98940225:98941350:98941479,	98940137	98940225	98940140	98940140	Nonsense_Mutation	G	T	p.G332X
ACC	TCGA-OR-A5JB-01	OAS1	ENST00000551241.1,ENST00000445409.2,ENST00000550689.1,ENST00000452357.2,ENST00000202917.5	chr12	113346427:113346629:113348855:113349040:113354313:113354383,	113348856	113349040	113348875	113348875	Nonsense_Mutation	T	G	p.Y163X
ACC	TCGA-OR-A5JB-01	GAS8	ENST00000537797.1,ENST00000566266.1	chr16	90097706:90097904:90099125:90099332:90102788:90102994,	90099126	90099332	90099240	90099240	Nonsense_Mutation	G	T	p.E135X
ACC	TCGA-OR-A5JB-01	CEP250	ENST00000425934.1,ENST00000342580.4,ENST00000397527.1	chr20	34061825:34061877:34063326:34063471:34064273:34064420,	34063327	34063471	34063418	34063418	Nonsense_Mutation	G	T	p.E555X
ACC	TCGA-OU-A5PI-01	ABCB6	ENST00000265316.3	chr2	220081085:220081187:220081373:220081554:220082391:220082529,	220081374	220081554	220081438	220081438	Nonsense_Mutation	G	T	p.C268X
ACC	TCGA-OR-A5KV-01	ARHGEF28	ENST00000426542.2,ENST00000287898.5,ENST00000296794.6,ENST00000513042.2,ENST00000296799.4,ENST00000545377.1,ENST00000437974.1	chr5	73163924:73164052:73165893:73166034:73168823:73169071,	73165894	73166034	73165981	73165981	Nonsense_Mutation	C	A	p.S838X
ACC	TCGA-OR-A5J7-01	ANKRD55	ENST00000341048.4	chr5	55422748:55422933:55439627:55439756:55455659:55455720,	55439628	55439756	55439737	55439737	Nonsense_Mutation	C	T	p.W168X
ACC	TCGA-OR-A5K9-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212241940:212242045:212245442:212245555:212251514:212251604,	212245443	212245555	212245552	212245552	Nonsense_Mutation	G	A	p.W344X
ACC	TCGA-OR-A5K9-01	RCAN2	ENST00000306764.7,ENST00000405162.1,ENST00000371374.1,ENST00000330430.6	chr6	46190877:46191038:46214484:46214656:46216459:46216633,	46214485	46214656	46214635	46214635	Nonsense_Mutation	C	A	p.G141X
ACC	TCGA-OR-A5K4-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026605	48026605	Nonsense_Mutation	C	T	p.R495X
ACC	TCGA-OR-A5K4-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026605	48026605	Nonsense_Mutation	C	T	p.R495X
ACC	TCGA-OR-A5K4-01	MDM2	ENST00000258148.7,ENST00000540352.1,ENST00000462284.1,ENST00000258149.5,ENST00000539479.1,ENST00000393415.3,ENST00000471946.1	chr12	69203006:69203072:69210591:69210725:69214104:69214154,69207381:69207408:69210591:69210725:69214104:69214154,	69210592	69210725	69210628	69210628	Nonsense_Mutation	C	T	p.R71X
ACC	TCGA-OR-A5K4-01	VPS35	ENST00000568784.2,ENST00000562420.1,ENST00000299138.7	chr16	46696154:46696394:46696894:46697074:46702841:46702964,	46696895	46697074	46697064	46697064	Nonsense_Mutation	C	T	p.W553X
ACC	TCGA-OR-A5K4-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66946406:66946483:66946566:66946794:66947033:66947184,	66946567	66946794	66946627	66946627	Nonsense_Mutation	G	A	p.R408X
ACC	TCGA-OR-A5J4-01	RAD1	ENST00000513914.1	chr5	34911722:34911917:34913574:34913683:34914799:34914906,34911722:34911917:34913574:34913683:34914031:34914131,	34913575	34913683	34913589	34913589	Nonsense_Mutation	G	C	p.S98X
ACC	TCGA-OR-A5J4-01	ETS2	ENST00000360214.3,ENST00000360938.3,ENST00000456966.1	chr21	40186704:40186905:40188931:40189015:40190348:40190570,	40188932	40189015	40188949	40188949	Nonsense_Mutation	G	T	p.E315X
ACC	TCGA-OR-A5KY-01	MEN1	ENST00000337652.1,ENST00000377326.3,ENST00000377313.1,ENST00000478548.1,ENST00000443283.1,ENST00000394374.2,ENST00000377321.1,ENST00000312049.6,ENST00000315422.4,ENST00000394376.1	chr11	64571846:64572288:64572505:64572670:64573106:64573242,	64572506	64572670	64572613	64572613	Nonsense_Mutation	G	A	p.R420X
BLCA	TCGA-2F-A9KO-01	NUDC	ENST00000321265.5	chr1	27271880:27271964:27272058:27272177:27272620:27272675,	27272059	27272177	27272063	27272063	Nonsense_Mutation	C	A	p.S277*
BLCA	TCGA-2F-A9KO-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420688	49420688	Nonsense_Mutation	G	A	p.R5021*
BLCA	TCGA-2F-A9KO-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56079010	56079010	Nonsense_Mutation	C	T	p.R82*
BLCA	TCGA-2F-A9KO-01	B3GNT3	ENST00000318683.6	chr19	17905965:17906015:17918566:17919183:17922379:17922562,	17918567	17919183	17919112	17919112	Nonsense_Mutation	G	T	p.E166*
BLCA	TCGA-2F-A9KO-01	B3GNT3	ENST00000595387.1	chr19	17905965:17906015:17918547:17919183:17922379:17922562,	17918548	17919183	17919112	17919112	Nonsense_Mutation	G	T	p.E166*
BLCA	TCGA-2F-A9KO-01	NEMF	ENST00000555411.1,ENST00000555970.1,ENST00000545773.1,ENST00000556925.1,ENST00000298310.5,ENST00000546046.1	chr14	50269170:50269291:50269386:50269445:50269954:50270012,	50269387	50269445	50269421	50269421	Nonsense_Mutation	G	C	p.S647*
BLCA	TCGA-2F-A9KO-01	VPS45	ENST00000535106.1,ENST00000369130.3,ENST00000369128.5,ENST00000419023.1,ENST00000477558.1	chr1	150049746:150049857:150053423:150053558:150053965:150054079,	150053424	150053558	150053426	150053426	Nonsense_Mutation	G	A	p.W230*
BLCA	TCGA-2F-A9KO-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232397	71232397	Nonsense_Mutation	C	G	p.S259*
BLCA	TCGA-2F-A9KO-01	AZI2	ENST00000479665.1,ENST00000457172.1,ENST00000462936.1,ENST00000295748.3,ENST00000414162.1,ENST00000420543.2,ENST00000334100.6,ENST00000463512.1	chr3	28378318:28378376:28379427:28379527:28379983:28380106,	28379428	28379527	28379434	28379434	Nonsense_Mutation	G	A	p.Q145*
BLCA	TCGA-2F-A9KO-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000577730.1	chr16	61747744:61747862:61760997:61761119:61823249:61823386,	61760998	61761119	61761012	61761012	Nonsense_Mutation	C	A	p.G508*
BLCA	TCGA-2F-A9KO-01	AGO1	ENST00000373204.4,ENST00000373206.1	chr1	36383922:36384024:36384655:36384855:36385099:36386559,	36384656	36384855	36384758	36384758	Nonsense_Mutation	C	T	p.R790*
BLCA	TCGA-2F-A9KO-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51523771	51523771	Nonsense_Mutation	G	C	p.S3718*
BLCA	TCGA-2F-A9KO-01	SLC16A2	ENST00000590447.1,ENST00000587091.1,ENST00000276033.5	chrX	73740954:73740969:73744193:73744644:73745584:73745728,	73744194	73744644	73744291	73744291	Nonsense_Mutation	C	T	p.Q299*
BLCA	TCGA-2F-A9KO-01	TESC	ENST00000541210.1	chr12	117494610:117494691:117513075:117513145:117537029:117537213,117486854:117486963:117513075:117513145:117537029:117537213,	117513076	117513145	117513134	117513134	Nonsense_Mutation	G	A	p.Q24*
BLCA	TCGA-2F-A9KO-01	MICALL2	ENST00000405088.4,ENST00000413446.1,ENST00000297508.7	chr7	1480226:1480320:1481827:1482120:1484287:1484510,	1481828	1482120	1482086	1482086	Nonsense_Mutation	G	A	p.Q485*
BLCA	TCGA-2F-A9KO-01	MSRB2	ENST00000376510.3	chr10	23399170:23399247:23408232:23408380:23409686:23409822,	23408233	23408380	23408306	23408306	Nonsense_Mutation	G	T	p.E124*
BLCA	TCGA-2F-A9KO-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113684606:113684677:113685895:113686104:113688379:113688416,	113685896	113686104	113686082	113686082	Nonsense_Mutation	G	A	p.Q496*
BLCA	TCGA-2F-A9KQ-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000514331.1,ENST00000351898.6	chr4	72120936:72121116:72205086:72205222:72215628:72215789,	72205087	72205222	72205110	72205110	Nonsense_Mutation	C	T	p.R49*
BLCA	TCGA-2F-A9KQ-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699029	17699029	Nonsense_Mutation	G	T	p.E923*
BLCA	TCGA-2F-A9KR-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26861352:26861556:26861724:26862216:26864134:26864454,	26861725	26862216	26861965	26861965	Nonsense_Mutation	C	A	p.S459*
BLCA	TCGA-2F-A9KR-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173803610:173803657:173806077:173806184:173807327:173807397,	173806078	173806184	173806135	173806135	Nonsense_Mutation	C	T	p.Q241*
BLCA	TCGA-2F-A9KR-01	CCAR1	ENST00000536012.1,ENST00000543719.1,ENST00000535016.1,ENST00000483264.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000543225.1	chr10	70515232:70515293:70516029:70516240:70517050:70517055,	70516030	70516240	70516175	70516175	Nonsense_Mutation	C	T	p.R591*
BLCA	TCGA-2F-A9KR-01	LLGL2	ENST00000545227.2,ENST00000577500.1,ENST00000167462.5	chr17	73570533:73570576:73570690:73570749:73570954:73570987,73570533:73570576:73570690:73570749:73570951:73571002,73570293:73570341:73570690:73570749:73570951:73571002,	73570691	73570749	73570736	73570736	Nonsense_Mutation	C	A	p.S1000*
BLCA	TCGA-2F-A9KR-01	LLGL2	ENST00000582393.1	chr17	73570293:73570341:73570533:73570749:73570951:73571002,	73570534	73570749	73570736	73570736	Nonsense_Mutation	C	A	p.S1000*
BLCA	TCGA-2F-A9KT-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618728	618728	Nonsense_Mutation	G	A	p.Q611*
BLCA	TCGA-2F-A9KT-01	MAZ	ENST00000322945.6,ENST00000545521.1,ENST00000219782.6	chr16	29818190:29818214:29818298:29819149:29819550:29819614,	29818299	29819149	29819028	29819028	Nonsense_Mutation	C	T	p.Q308*
BLCA	TCGA-2F-A9KT-01	SERINC5	ENST00000512721.1,ENST00000512972.2,ENST00000509193.1,ENST00000507668.2	chr5	79462209:79462301:79465157:79465369:79470776:79470870,	79465158	79465369	79465190	79465190	Nonsense_Mutation	G	C	p.S244*
BLCA	TCGA-2F-A9KT-01	AGR3	ENST00000414935.1,ENST00000402239.3,ENST00000310398.2	chr7	16901007:16901071:16901607:16901684:16902233:16902282,	16901608	16901684	16901637	16901637	Nonsense_Mutation	G	A	p.Q92*
BLCA	TCGA-2F-A9KT-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965512	123965512	Nonsense_Mutation	G	T	p.E588*
BLCA	TCGA-2F-A9KT-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48027214	48027214	Nonsense_Mutation	C	T	p.Q698*
BLCA	TCGA-2F-A9KT-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48027214	48027214	Nonsense_Mutation	C	T	p.Q698*
BLCA	TCGA-2F-A9KT-01	CHD6	ENST00000373233.3	chr20	40049147:40050719:40052131:40052340:40053817:40054029,	40052132	40052340	40052253	40052253	Nonsense_Mutation	C	T	p.W1478*
BLCA	TCGA-2F-A9KT-01	LRPPRC	ENST00000409659.1,ENST00000409946.1	chr2	44206964:44207087:44209376:44209573:44222937:44223117,	44209377	44209573	44209479	44209479	Nonsense_Mutation	G	A	p.Q82*
BLCA	TCGA-2F-A9KT-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228487582:228487846:228491375:228491639:228492003:228492045,	228491376	228491639	228491619	228491619	Nonsense_Mutation	C	A	p.S4661*
BLCA	TCGA-2F-A9KT-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000449094.1,ENST00000456774.1,ENST00000358536.4	chr3	48462256:48462365:48462636:48462793:48463082:48463209,	48462637	48462793	48462783	48462783	Nonsense_Mutation	G	C	p.S555*
BLCA	TCGA-2F-A9KT-01	PSIP1	ENST00000380738.4,ENST00000380733.4	chr9	15464063:15465578:15466745:15466857:15468627:15468841,	15466746	15466857	15466854	15466854	Nonsense_Mutation	G	C	p.S475*
BLCA	TCGA-2F-A9KT-01	USP25	ENST00000400183.2,ENST00000285679.6,ENST00000351097.5,ENST00000285681.2	chr21	17138320:17138460:17150222:17150346:17163820:17163983,	17150223	17150346	17150261	17150261	Nonsense_Mutation	C	T	p.Q103*
BLCA	TCGA-2F-A9KT-01	CPB2	ENST00000181383.4	chr13	46632313:46632516:46638782:46638876:46648007:46648112,46632313:46632516:46638782:46638876:46641441:46641552,	46638783	46638876	46638788	46638788	Nonsense_Mutation	C	T	p.W264*
BLCA	TCGA-2F-A9KT-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152276738:152276893:152279463:152279556:152285297:152285436,	152279464	152279556	152279482	152279482	Nonsense_Mutation	C	T	p.Q238*
BLCA	TCGA-4Z-AA7M-01	PFKL	ENST00000397961.2,ENST00000403390.1	chr21	45725210:45725300:45725682:45725818:45726563:45726637,	45725683	45725818	45725780	45725780	Nonsense_Mutation	C	G	p.S63*
BLCA	TCGA-4Z-AA7M-01	TANGO2	ENST00000399807.3	chr22	20008661:20008769:20024282:20024617:20030877:20030966,20008624:20008657:20024282:20024617:20030877:20030966,	20024283	20024617	20024596	20024596	Nonsense_Mutation	C	G	p.S17*
BLCA	TCGA-4Z-AA7M-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073959	197073959	Nonsense_Mutation	C	T	p.W1474*
BLCA	TCGA-4Z-AA7M-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73786098:73786269:73799388:73800551:73826527:73826648,	73799389	73800551	73799944	73799944	Nonsense_Mutation	C	G	p.S3646*
BLCA	TCGA-4Z-AA7M-01	FUBP3	ENST00000465949.1	chr9	133454992:133455151:133470869:133470975:133485340:133485374,133456481:133456900:133470869:133470975:133485340:133485374,	133470870	133470975	133470931	133470931	Nonsense_Mutation	C	G	p.S49*
BLCA	TCGA-4Z-AA7O-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603284	138603284	Nonsense_Mutation	G	C	p.S363*
BLCA	TCGA-4Z-AA7O-01	PSD3	ENST00000327040.8,ENST00000523619.1,ENST00000286485.8	chr8	18513151:18513195:18622958:18623048:18656804:18656863,	18622959	18623048	18623024	18623024	Nonsense_Mutation	G	A	p.Q705*
BLCA	TCGA-4Z-AA7Q-01	DDB1	ENST00000540166.1,ENST00000537877.1,ENST00000540784.1,ENST00000535967.1,ENST00000539739.1,ENST00000301764.7	chr11	61081519:61081682:61081779:61081958:61083756:61083865,	61081780	61081958	61081799	61081799	Nonsense_Mutation	G	A	p.Q524*
BLCA	TCGA-4Z-AA7Q-01	ANKHD1	ENST00000360839.2,ENST00000297183.6,ENST00000421134.1	chr5	139866542:139866645:139876104:139876863:139884405:139884551,	139876105	139876863	139876176	139876176	Nonsense_Mutation	C	T	p.Q773*
BLCA	TCGA-4Z-AA7Q-01	DNM2	ENST00000587830.2,ENST00000355667.6,ENST00000587485.1,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000585892.1,ENST00000359692.6,ENST00000591701.1	chr19	10893691:10893796:10897239:10897382:10904395:10904427,	10897240	10897382	10897324	10897324	Nonsense_Mutation	G	T	p.E312*
BLCA	TCGA-4Z-AA7Q-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370516	240370516	Nonsense_Mutation	C	T	p.Q802*
BLCA	TCGA-4Z-AA7R-01	STAM	ENST00000540523.1	chr10	17702462:17702547:17730025:17730172:17735220:17735280,	17730026	17730172	17730072	17730072	Nonsense_Mutation	G	A	p.W115*
BLCA	TCGA-4Z-AA7R-01	FBN1	ENST00000316623.5	chr15	48818326:48818452:48826276:48826402:48829807:48830005,	48826277	48826402	48826367	48826367	Nonsense_Mutation	G	A	p.Q258*
BLCA	TCGA-4Z-AA7R-01	STAM	ENST00000540523.1	chr10	17702462:17702547:17730025:17730172:17735220:17735280,	17730026	17730172	17730073	17730073	Nonsense_Mutation	G	A	p.W115*
BLCA	TCGA-4Z-AA7R-01	OVOL2	ENST00000483661.1	chr20	18022248:18022367:18037300:18037521:18038178:18038521,18022248:18022367:18037300:18037521:18039533:18039694,	18037301	18037521	18037360	18037360	Nonsense_Mutation	C	A	p.E88*
BLCA	TCGA-4Z-AA7R-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574021	7574021	Nonsense_Mutation	C	A	p.E336*
BLCA	TCGA-4Z-AA7W-01	MS4A3	ENST00000358152.2	chr11	59824175:59824213:59828618:59828789:59831734:59831791,	59828619	59828789	59828763	59828763	Nonsense_Mutation	C	T	p.Q44*
BLCA	TCGA-4Z-AA7W-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58118534:58118658:58120342:58120499:58121705:58121895,	58120343	58120499	58120491	58120491	Nonsense_Mutation	C	T	p.Q1555*
BLCA	TCGA-4Z-AA7W-01	PDGFRA	ENST00000508170.1,ENST00000504461.1,ENST00000512522.1,ENST00000503856.1,ENST00000509490.1,ENST00000257290.5	chr4	55124923:55124984:55127261:55127579:55129833:55130094,	55127262	55127579	55127289	55127289	Nonsense_Mutation	C	G	p.S26*
BLCA	TCGA-4Z-AA7W-01	YME1L1	ENST00000376016.3,ENST00000375972.3,ENST00000491542.2,ENST00000326799.3	chr10	27412475:27412628:27415624:27415715:27420787:27420870,	27415625	27415715	27415709	27415709	Nonsense_Mutation	C	A	p.E346*
BLCA	TCGA-4Z-AA7W-01	KANSL1	ENST00000577114.1,ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1	chr17	44159806:44159908:44171925:44172067:44248220:44248306,	44171926	44172067	44172056	44172056	Nonsense_Mutation	G	C	p.S434*
BLCA	TCGA-4Z-AA7W-01	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24995015:24995158:25002719:25002883:25031463:25031583,	25002720	25002883	25002810	25002810	Nonsense_Mutation	G	C	p.S195*
BLCA	TCGA-4Z-AA7W-01	VIPAS39	ENST00000553888.1,ENST00000327028.4,ENST00000557658.1,ENST00000343765.2,ENST00000448935.2,ENST00000556412.1	chr14	77893856:77893979:77894712:77894817:77895348:77895438,	77894713	77894817	77894753	77894753	Nonsense_Mutation	G	C	p.S474*
BLCA	TCGA-4Z-AA7W-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198186	20198186	Nonsense_Mutation	C	A	p.G600*
BLCA	TCGA-4Z-AA7W-01	NUBP1	ENST00000433392.2	chr16	10846466:10846535:10850546:10850637:10851729:10851851,	10850547	10850637	10850575	10850575	Nonsense_Mutation	C	A	p.S130*
BLCA	TCGA-4Z-AA7W-01	IPO7	ENST00000379719.3	chr11	9446692:9446809:9450086:9450176:9450577:9450743,	9450087	9450176	9450105	9450105	Nonsense_Mutation	C	T	p.Q452*
BLCA	TCGA-4Z-AA7W-01	TPP1	ENST00000533371.1,ENST00000299427.6	chr11	6637653:6637734:6637891:6638090:6638205:6638384,	6637892	6638090	6638065	6638065	Nonsense_Mutation	G	C	p.S238*
BLCA	TCGA-4Z-AA7W-01	MBTPS1	ENST00000569770.1,ENST00000343411.3,ENST00000565863.1	chr16	84115356:84115513:84118587:84118739:84120962:84121065,	84118588	84118739	84118642	84118642	Nonsense_Mutation	G	C	p.S411*
BLCA	TCGA-4Z-AA7Y-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44216366:44216513:44217113:44217320:44217411:44217571,	44217114	44217320	44217154	44217154	Nonsense_Mutation	C	A	p.S63*
BLCA	TCGA-4Z-AA7Y-01	AGTRAP	ENST00000510878.1	chr1	11807568:11807602:11808471:11808667:11810133:11810182,11805859:11805894:11808471:11808667:11810133:11810182,	11808472	11808667	11808649	11808649	Nonsense_Mutation	G	T	p.E116*
BLCA	TCGA-4Z-AA7Y-01	RCOR2	ENST00000301459.4	chr11	63681888:63682013:63682126:63682288:63682373:63682426,	63682127	63682288	63682203	63682203	Nonsense_Mutation	C	T	p.W135*
BLCA	TCGA-4Z-AA7Y-01	BCO2	ENST00000357685.5,ENST00000526088.1,ENST00000361053.4,ENST00000438022.1,ENST00000393032.2,ENST00000530677.1,ENST00000531169.1,ENST00000460924.2,ENST00000494860.1,ENST00000532593.1	chr11	112072745:112072913:112084446:112084584:112085484:112085582,	112084447	112084584	112084477	112084477	Nonsense_Mutation	C	T	p.R409*
BLCA	TCGA-4Z-AA7Y-01	ASPSCR1	ENST00000580534.1	chr17	79969418:79969481:79970031:79970159:79974351:79974403,	79970032	79970159	79970157	79970157	Nonsense_Mutation	C	T	p.Q451*
BLCA	TCGA-4Z-AA7Y-01	ASPSCR1	ENST00000582355.2,ENST00000583744.1,ENST00000577733.1,ENST00000581608.1,ENST00000584454.1,ENST00000306739.4,ENST00000578236.1,ENST00000585274.1	chr17	79969418:79969481:79970106:79970159:79974351:79974403,	79970107	79970159	79970157	79970157	Nonsense_Mutation	C	T	p.Q451*
BLCA	TCGA-4Z-AA80-01	SLC30A9	ENST00000513699.1,ENST00000264451.7	chr4	42041002:42041070:42051393:42051496:42062207:42062263,	42051394	42051496	42051474	42051474	Nonsense_Mutation	C	G	p.S273*
BLCA	TCGA-4Z-AA80-01	NOL4	ENST00000538587.1,ENST00000586314.1,ENST00000261592.5,ENST00000535475.1,ENST00000535384.1,ENST00000590712.1	chr18	31432552:31432999:31463207:31463388:31523028:31523142,	31463208	31463388	31463352	31463352	Nonsense_Mutation	C	A	p.E527*
BLCA	TCGA-4Z-AA80-01	ADHFE1	ENST00000396623.3,ENST00000419955.1,ENST00000496501.1,ENST00000480040.1,ENST00000415254.1,ENST00000276576.7,ENST00000426810.1,ENST00000424777.2	chr8	67366331:67366392:67369051:67369130:67369304:67369401,	67369052	67369130	67369109	67369109	Nonsense_Mutation	C	A	p.Y348*
BLCA	TCGA-4Z-AA80-01	UBR1	ENST00000569971.1,ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43335541:43335593:43339358:43339487:43340589:43340689,	43339359	43339487	43339379	43339379	Nonsense_Mutation	G	A	p.Q550*
BLCA	TCGA-4Z-AA80-01	UBE2V2	ENST00000518360.1	chr8	48921001:48921030:48955592:48955741:48962412:48962538,	48955593	48955741	48955643	48955643	Nonsense_Mutation	C	T	p.Q23*
BLCA	TCGA-4Z-AA80-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29821457:29822387:29824917:29824998:29839525:29840192,	29824918	29824998	29824926	29824926	Nonsense_Mutation	C	T	p.W300*
BLCA	TCGA-4Z-AA80-01	YME1L1	ENST00000376016.3,ENST00000326799.3,ENST00000396296.3	chr10	27425204:27425314:27431315:27431414:27434356:27434519,	27431316	27431414	27431370	27431370	Nonsense_Mutation	G	A	p.R183*
BLCA	TCGA-4Z-AA80-01	DPH7	ENST00000460572.1	chr9	140470760:140470854:140472028:140472055:140473076:140473169,	140472029	140472055	140472031	140472031	Nonsense_Mutation	G	A	p.Q60*
BLCA	TCGA-4Z-AA80-01	DPH7	ENST00000481839.1	chr9	140470760:140470854:140471921:140472055:140473076:140473169,140470531:140470619:140471921:140472055:140473076:140473169,140470760:140470854:140471921:140472055:140472961:140472992,	140471922	140472055	140472031	140472031	Nonsense_Mutation	G	A	p.Q60*
BLCA	TCGA-4Z-AA80-01	TMEM209	ENST00000462753.1,ENST00000397622.2,ENST00000336804.8,ENST00000473456.1	chr7	129825031:129825207:129832461:129832663:129841689:129841931,	129832462	129832663	129832606	129832606	Nonsense_Mutation	C	A	p.E211*
BLCA	TCGA-4Z-AA81-01	GCH1	ENST00000543643.2	chr14	55309713:55309772:55310499:55310587:55312485:55312565,	55310500	55310587	55310582	55310582	Nonsense_Mutation	G	C	p.S211*
BLCA	TCGA-4Z-AA81-01	FGFR3	ENST00000260795.2,ENST00000412135.2,ENST00000340107.4,ENST00000440486.2,ENST00000352904.1	chr4	1807788:1807900:1807983:1808054:1808272:1808410,	1807984	1808054	1808044	1808044	Nonsense_Mutation	C	T	p.Q676*
BLCA	TCGA-4Z-AA82-01	MNDA	ENST00000368141.4	chr1	158813744:158813912:158815376:158815793:158817517:158817679,	158815377	158815793	158815539	158815539	Nonsense_Mutation	C	T	p.Q245*
BLCA	TCGA-4Z-AA83-01	NOTCH4	ENST00000375023.3,ENST00000474612.1	chr6	32163398:32163927:32164100:32164198:32164701:32164754,	32164101	32164198	32164180	32164180	Nonsense_Mutation	C	T	p.W1740*
BLCA	TCGA-4Z-AA83-01	TARBP1	ENST00000481183.1,ENST00000040877.1	chr1	234536926:234537008:234541648:234541845:234546190:234546277,	234541649	234541845	234541779	234541779	Nonsense_Mutation	G	A	p.R1287*
BLCA	TCGA-4Z-AA84-01	MUC5B	ENST00000525715.1,ENST00000529681.1,ENST00000447027.1	chr11	1250919:1251037:1251234:1251373:1251719:1251830,	1251235	1251373	1251361	1251361	Nonsense_Mutation	C	G	p.Y452*
BLCA	TCGA-4Z-AA84-01	USPL1	ENST00000255304.4	chr13	31211880:31211994:31216764:31216894:31221068:31221194,	31216765	31216894	31216887	31216887	Nonsense_Mutation	C	T	p.Q369*
BLCA	TCGA-4Z-AA84-01	NF1	ENST00000495910.2,ENST00000358273.4,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29556852:29556992:29557277:29557400:29557859:29557943,	29557278	29557400	29557315	29557315	Nonsense_Mutation	C	T	p.Q1010*
BLCA	TCGA-4Z-AA84-01	RNF175	ENST00000506505.1	chr4	154649358:154649513:154669796:154669979:154672589:154672599,154666820:154666879:154669796:154669979:154672589:154672599,	154669797	154669979	154669824	154669824	Nonsense_Mutation	C	T	p.W73*
BLCA	TCGA-4Z-AA84-01	RNF175	ENST00000503694.1,ENST00000274068.4	chr4	154649358:154649513:154669796:154669938:154672589:154672599,154644551:154644610:154669796:154669938:154672589:154672599,	154669797	154669938	154669824	154669824	Nonsense_Mutation	C	T	p.W73*
BLCA	TCGA-4Z-AA86-01	RFWD3	ENST00000571750.1,ENST00000361070.4	chr16	74666420:74666571:74670243:74670475:74671753:74671868,	74670244	74670475	74670451	74670451	Nonsense_Mutation	G	A	p.Q407*
BLCA	TCGA-4Z-AA86-01	ABHD12	ENST00000339157.5	chr20	25275378:25275666:25282854:25282982:25284185:25284264,25281334:25281520:25282854:25282982:25284185:25284264,	25282855	25282982	25282958	25282958	Nonsense_Mutation	G	A	p.R352*
BLCA	TCGA-4Z-AA86-01	FLNA	ENST00000415241.1	chrX	153581139:153581292:153581368:153581589:153581663:153581824,	153581369	153581589	153581396	153581396	Nonsense_Mutation	C	A	p.E2059*
BLCA	TCGA-4Z-AA86-01	FLNA	ENST00000490936.1,ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000369856.3,ENST00000422373.1,ENST00000420627.1	chrX	153581139:153581292:153581368:153581572:153581663:153581824,	153581369	153581572	153581396	153581396	Nonsense_Mutation	C	A	p.E2059*
BLCA	TCGA-4Z-AA86-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47142964	47142964	Nonsense_Mutation	G	A	p.Q1667*
BLCA	TCGA-4Z-AA87-01	PDSS1	ENST00000376203.5,ENST00000376215.5	chr10	26994236:26994323:26998566:26998697:27009063:27009288,26994236:26994323:26998566:26998697:27009146:27009288,	26998567	26998697	26998639	26998639	Nonsense_Mutation	C	T	p.R137*
BLCA	TCGA-4Z-AA87-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764623	138764623	Nonsense_Mutation	G	C	p.S355*
BLCA	TCGA-4Z-AA87-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764623	138764623	Nonsense_Mutation	G	C	p.S355*
BLCA	TCGA-4Z-AA87-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24769659:24769681:24788253:24788679:24800552:24803138,	24788254	24788679	24788436	24788436	Nonsense_Mutation	C	T	p.Q116*
BLCA	TCGA-4Z-AA89-01	TTC31	ENST00000424122.1,ENST00000442235.2,ENST00000233623.5,ENST00000464241.1,ENST00000459957.1,ENST00000463189.1,ENST00000410003.1	chr2	74717370:74717600:74717782:74717866:74718254:74718311,	74717783	74717866	74717816	74717816	Nonsense_Mutation	G	T	p.E166*
BLCA	TCGA-4Z-AA89-01	ACADVL	ENST00000356839.5,ENST00000543245.2,ENST00000322910.5,ENST00000350303.5	chr17	7125495:7125621:7125985:7126184:7126451:7126556,	7125986	7126184	7126021	7126021	Nonsense_Mutation	C	G	p.S305*
BLCA	TCGA-4Z-AA89-01	C1orf158	ENST00000376210.3	chr1	12806372:12806489:12819242:12819420:12820702:12821102,	12819243	12819420	12819368	12819368	Nonsense_Mutation	G	A	p.W117*
BLCA	TCGA-4Z-AA89-01	RHOBTB3	ENST00000503737.1,ENST00000379982.3,ENST00000504179.1	chr5	95119537:95119667:95124465:95124562:95128762:95128874,	95124466	95124562	95124488	95124488	Nonsense_Mutation	C	G	p.S549*
BLCA	TCGA-4Z-AA89-01	POLR3A	ENST00000372371.3	chr10	79742410:79742575:79743677:79743770:79743962:79744056,	79743678	79743770	79743752	79743752	Nonsense_Mutation	C	A	p.E1119*
BLCA	TCGA-4Z-AA89-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697755	17697755	Nonsense_Mutation	C	G	p.S498*
BLCA	TCGA-5N-A9KI-01	HPS1	ENST00000338546.5,ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000474873.1,ENST00000498219.1,ENST00000480020.1	chr10	100195391:100195529:100202880:100202997:100205056:100205161,	100202881	100202997	100202940	100202940	Nonsense_Mutation	G	A	p.Q20*
BLCA	TCGA-5N-A9KI-01	VWA8	ENST00000281496.6	chr13	42486173:42486304:42524071:42524149:42534988:42535220,	42524072	42524149	42524081	42524081	Nonsense_Mutation	G	A	p.Q78*
BLCA	TCGA-5N-A9KI-01	RB1	ENST00000267163.4	chr13	49039340:49039504:49047495:49047526:49050836:49050979,	49047496	49047526	49047507	49047507	Nonsense_Mutation	C	A	p.S834*
BLCA	TCGA-5N-A9KI-01	ENOX2	ENST00000370935.1,ENST00000394363.1,ENST00000338144.3,ENST00000370927.1,ENST00000432489.1	chrX	129801503:129801716:129803938:129804172:129813515:129813722,	129803939	129804172	129803977	129803977	Nonsense_Mutation	G	C	p.S248*
BLCA	TCGA-5N-A9KM-01	ENPP3	ENST00000414305.1,ENST00000543135.1,ENST00000357639.3,ENST00000427707.1,ENST00000358229.5,ENST00000494023.1,ENST00000427148.2	chr6	131973996:131974031:131979462:131979560:131992387:131992467,	131979463	131979560	131979528	131979528	Nonsense_Mutation	G	A	p.W177*
BLCA	TCGA-5N-A9KM-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395102	33395102	Nonsense_Mutation	C	A	p.E40*
BLCA	TCGA-BL-A0C8-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236137	42236137	Nonsense_Mutation	G	A	p.Q398*
BLCA	TCGA-BL-A0C8-01	BRAT1	ENST00000421712.1	chr7	2584542:2584690:2586957:2587112:2593938:2594081,2583253:2583596:2586957:2587112:2593938:2594081,	2586958	2587112	2586960	2586960	Nonsense_Mutation	G	A	p.Q94*
BLCA	TCGA-BL-A0C8-01	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000529725.1,ENST00000394227.3,ENST00000531339.1,ENST00000527525.1	chr11	65417227:65417336:65417420:65417522:65417608:65417663,	65417421	65417522	65417472	65417472	Nonsense_Mutation	C	A	p.S933*
BLCA	TCGA-BL-A13I-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16437456	16437456	Nonsense_Mutation	G	A	p.Q246*
BLCA	TCGA-BL-A13J-01	EIF2B1	ENST00000424014.2	chr12	124107182:124107308:124109333:124109409:124110971:124111040,	124109334	124109409	124109399	124109399	Nonsense_Mutation	C	A	p.E188*
BLCA	TCGA-BL-A3JM-01	GPX3	ENST00000388825.4,ENST00000517973.1	chr5	150406526:150406578:150406992:150407092:150407469:150407727,	150406993	150407092	150407000	150407000	Nonsense_Mutation	C	T	p.R123*
BLCA	TCGA-BL-A3JM-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128844063	128844063	Nonsense_Mutation	G	C	p.S996*
BLCA	TCGA-BL-A3JM-01	DEPDC5	ENST00000266091.3,ENST00000535622.1,ENST00000382111.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32272142:32272251:32275510:32275738:32289567:32289737,	32275511	32275738	32275583	32275583	Nonsense_Mutation	G	A	p.W1293*
BLCA	TCGA-BL-A5ZZ-01	MAMDC2	ENST00000377182.4	chr9	72785394:72785547:72833252:72833512:72840665:72840750,	72833253	72833512	72833324	72833324	Nonsense_Mutation	C	T	p.R575*
BLCA	TCGA-BL-A5ZZ-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56883813:56884023:56885518:56885721:56886841:56886946,	56885519	56885721	56885582	56885582	Nonsense_Mutation	G	T	p.E1026*
BLCA	TCGA-BL-A5ZZ-01	ITGB1BP2	ENST00000538820.1,ENST00000373829.3,ENST00000483897.1	chrX	70523310:70523366:70523476:70523547:70523661:70523761,	70523477	70523547	70523534	70523534	Nonsense_Mutation	C	T	p.R158*
BLCA	TCGA-BT-A0YX-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000481180.1,ENST00000334652.5,ENST00000448243.1,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93648916:93649052:93649534:93649703:93651901:93651955,	93649535	93649703	93649605	93649605	Nonsense_Mutation	C	T	p.Q69*
BLCA	TCGA-BT-A0YX-01	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41506169:41508164:41515056:41515506:41517087:41517280,	41515057	41515506	41515451	41515451	Nonsense_Mutation	G	A	p.Q288*
BLCA	TCGA-BT-A0YX-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16435866	16435866	Nonsense_Mutation	C	A	p.E776*
BLCA	TCGA-BT-A0YX-01	CGN	ENST00000271636.7	chr1	151497149:151497362:151498117:151498266:151499450:151499583,	151498118	151498266	151498241	151498241	Nonsense_Mutation	G	T	p.E580*
BLCA	TCGA-BT-A0YX-01	OCIAD2	ENST00000510159.1	chr4	48899857:48899874:48901845:48901942:48906500:48906628,48899820:48899852:48901845:48901942:48906500:48906628,	48901846	48901942	48901920	48901920	Nonsense_Mutation	G	C	p.S30*
BLCA	TCGA-BT-A0YX-01	CHCHD3	ENST00000542753.1,ENST00000423635.1,ENST00000448878.1,ENST00000466644.1	chr7	132709305:132709387:132754901:132754989:132766616:132766800,	132754902	132754989	132754904	132754904	Nonsense_Mutation	G	C	p.S56*
BLCA	TCGA-BT-A0YX-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113460506	113460506	Nonsense_Mutation	C	T	p.W174*
BLCA	TCGA-BT-A0YX-01	FUS	ENST00000487509.2,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31195181:31195323:31195529:31195717:31196259:31196500,	31195530	31195717	31195651	31195651	Nonsense_Mutation	C	T	p.Q153*
BLCA	TCGA-BT-A20J-01	CPB2	ENST00000439329.3,ENST00000181383.4	chr13	46652934:46653036:46656575:46656684:46658353:46658478,	46656576	46656684	46656653	46656653	Nonsense_Mutation	G	A	p.Q103*
BLCA	TCGA-BT-A20J-01	SVIL	ENST00000375400.3	chr10	29819535:29819597:29820182:29820217:29839525:29840192,	29820183	29820217	29820209	29820209	Nonsense_Mutation	G	C	p.S673*
BLCA	TCGA-BT-A20J-01	PRDM5	ENST00000264808.3,ENST00000502409.1	chr4	121737607:121737729:121737986:121738079:121739507:121739682,	121737987	121738079	121738027	121738027	Nonsense_Mutation	G	A	p.Q235*
BLCA	TCGA-BT-A20J-01	TRIM37	ENST00000376149.3,ENST00000577554.1	chr17	57078958:57079075:57089688:57089807:57092970:57092978,57076741:57076820:57089688:57089807:57092970:57092978,	57089689	57089807	57089713	57089713	Nonsense_Mutation	C	A	p.G769*
BLCA	TCGA-BT-A20J-01	PADI2	ENST00000375486.4,ENST00000375481.1	chr1	17411093:17411197:17413015:17413194:17418902:17419028,	17413016	17413194	17413062	17413062	Nonsense_Mutation	G	C	p.S263*
BLCA	TCGA-BT-A20J-01	BAX	ENST00000354470.3	chr19	49458185:49458219:49458804:49458856:49458943:49459090,49458185:49458219:49458804:49458856:49459454:49459573,	49458805	49458856	49458852	49458852	Nonsense_Mutation	C	T	p.Q28*
BLCA	TCGA-BT-A20J-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458852	49458852	Nonsense_Mutation	C	T	p.Q28*
BLCA	TCGA-BT-A20J-01	FOXP2	ENST00000393489.3,ENST00000412402.1,ENST00000403559.4,ENST00000350908.4,ENST00000393491.3,ENST00000393494.2,ENST00000393498.2,ENST00000408937.3	chr7	114303504:114303574:114304327:114304491:114329836:114329981,	114304328	114304491	114304340	114304340	Nonsense_Mutation	G	T	p.E643*
BLCA	TCGA-BT-A20J-01	FANCA	ENST00000389301.3,ENST00000568369.1	chr16	89858878:89858955:89862313:89862426:89865573:89865640,	89862314	89862426	89862344	89862344	Nonsense_Mutation	G	A	p.Q326*
BLCA	TCGA-BT-A20N-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577107	7577107	Nonsense_Mutation	A	T	p.C277*
BLCA	TCGA-BT-A20O-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541654	187541654	Nonsense_Mutation	G	T	p.S2029*
BLCA	TCGA-BT-A20O-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125108	12125108	Nonsense_Mutation	C	T	p.Q1694*
BLCA	TCGA-BT-A20P-01	MST1R	ENST00000463789.1,ENST00000411578.2,ENST00000296474.3,ENST00000434765.1,ENST00000440292.1,ENST00000344206.4	chr3	49928629:49928739:49928831:49929013:49929190:49929271,	49928832	49929013	49929005	49929005	Nonsense_Mutation	C	A	p.E1121*
BLCA	TCGA-BT-A20P-01	MGP	ENST00000539261.1,ENST00000228938.5	chr12	15035105:15035214:15035905:15035981:15037146:15037179,	15035906	15035981	15035937	15035937	Nonsense_Mutation	G	A	p.Q47*
BLCA	TCGA-BT-A20Q-01	POLI	ENST00000217800.5,ENST00000585023.1,ENST00000579434.1,ENST00000406285.3,ENST00000577361.1,ENST00000581950.1,ENST00000579534.1,ENST00000582366.1	chr18	51813650:51813781:51818202:51818408:51820018:51820129,	51818203	51818408	51818253	51818253	Nonsense_Mutation	C	T	p.R417*
BLCA	TCGA-BT-A20Q-01	SNRPB2	ENST00000246071.6,ENST00000377943.5	chr20	16717914:16718046:16719496:16719547:16720969:16721058,	16719497	16719547	16719531	16719531	Nonsense_Mutation	C	G	p.S138*
BLCA	TCGA-BT-A20Q-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40601237:40601362:40604102:40604210:40604298:40604424,	40604103	40604210	40604198	40604198	Nonsense_Mutation	G	A	p.R969*
BLCA	TCGA-BT-A20Q-01	ARMC3	ENST00000376528.4,ENST00000298032.5,ENST00000409983.3	chr10	23319559:23319725:23321789:23321952:23326198:23326495,	23321790	23321952	23321935	23321935	Nonsense_Mutation	C	T	p.R798*
BLCA	TCGA-BT-A20Q-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156625	106156625	Nonsense_Mutation	C	G	p.S509*
BLCA	TCGA-BT-A20Q-01	CCDC36	ENST00000452691.2,ENST00000366429.2	chr3	49236942:49237006:49249198:49249269:49273980:49274007,	49249199	49249269	49249260	49249260	Nonsense_Mutation	C	A	p.S16*
BLCA	TCGA-BT-A20R-01	MAD1L1	ENST00000265854.7,ENST00000429779.1	chr7	2262209:2262389:2269618:2269778:2270183:2270296,2265044:2265185:2269618:2269778:2272506:2272580,	2269619	2269778	2269702	2269702	Nonsense_Mutation	G	A	p.Q23*
BLCA	TCGA-BT-A20R-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056160	27056160	Nonsense_Mutation	C	T	p.Q386*
BLCA	TCGA-BT-A20R-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881462	48881462	Nonsense_Mutation	C	T	p.Q62*
BLCA	TCGA-BT-A20R-01	ZNF266	ENST00000590306.1,ENST00000592292.1,ENST00000361451.2,ENST00000361151.1,ENST00000588221.1,ENST00000591213.1,ENST00000592904.1,ENST00000588933.1	chr19	9525383:9525396:9526329:9526418:9528503:9528584,	9526330	9526418	9526415	9526415	Nonsense_Mutation	G	T	p.S40*
BLCA	TCGA-BT-A20R-01	CORO1A	ENST00000219150.5,ENST00000568763.1,ENST00000570045.1	chr16	30199512:30199570:30199681:30199897:30200180:30200194,	30199682	30199897	30199708	30199708	Nonsense_Mutation	C	A	p.Y364*
BLCA	TCGA-BT-A20T-01	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49160879:49161064:49161160:49161533:49161622:49161719,	49161161	49161533	49161498	49161498	Nonsense_Mutation	G	A	p.Q1154*
BLCA	TCGA-BT-A20T-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862198	4862198	Nonsense_Mutation	G	A	p.Q391*
BLCA	TCGA-BT-A20T-01	BTBD11	ENST00000420571.2,ENST00000280758.5,ENST00000357167.4,ENST00000490090.2	chr12	108006556:108006646:108008837:108008939:108010865:108010959,	108008838	108008939	108008937	108008937	Nonsense_Mutation	C	T	p.Q667*
BLCA	TCGA-BT-A20T-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820792	3820792	Nonsense_Mutation	G	A	p.Q887*
BLCA	TCGA-BT-A20T-01	LRRC7	ENST00000035383.5,ENST00000310961.5	chr1	70486687:70486812:70488808:70489057:70493853:70494054,	70488809	70489057	70488897	70488897	Nonsense_Mutation	G	A	p.W512*
BLCA	TCGA-BT-A20U-01	LRRC41	ENST00000498402.1,ENST00000472710.1,ENST00000343304.6	chr1	46751033:46752171:46763234:46763305:46763955:46764042,	46763235	46763305	46763283	46763283	Nonsense_Mutation	C	T	p.W103*
BLCA	TCGA-BT-A20V-01	MYO3A	ENST00000265944.5	chr10	26490193:26490234:26491892:26492036:26500771:26501138,	26491893	26492036	26492008	26492008	Nonsense_Mutation	C	T	p.Q1568*
BLCA	TCGA-BT-A20W-01	MAP4K1	ENST00000589130.1,ENST00000591921.1,ENST00000396857.2,ENST00000591517.1	chr19	39086124:39086195:39086279:39086369:39086578:39086641,	39086280	39086369	39086328	39086328	Nonsense_Mutation	C	A	p.G741*
BLCA	TCGA-BT-A20W-01	ATP6V0A1	ENST00000264649.6,ENST00000393829.2,ENST00000343619.4,ENST00000544137.1,ENST00000537728.1,ENST00000546249.1,ENST00000585525.1	chr17	40639364:40639385:40642504:40642655:40646351:40646491,	40642505	40642655	40642597	40642597	Nonsense_Mutation	T	G	p.Y372*
BLCA	TCGA-BT-A20X-01	CDHR3	ENST00000470188.1	chr7	105603741:105603810:105615289:105615492:105621413:105621530,105552928:105553084:105615289:105615492:105621413:105621579,	105615290	105615492	105615295	105615295	Nonsense_Mutation	G	T	p.E18*
BLCA	TCGA-BT-A20X-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204*
BLCA	TCGA-BT-A2LB-01	SLC38A10	ENST00000539748.1,ENST00000288439.5,ENST00000542075.1,ENST00000374759.3	chr17	79255988:79256132:79257208:79257302:79258649:79258695,	79257209	79257302	79257211	79257211	Nonsense_Mutation	G	A	p.Q119*
BLCA	TCGA-BT-A2LB-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752825	36752825	Nonsense_Mutation	C	T	p.Q332*
BLCA	TCGA-BT-A2LB-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229623212:229623360:229625701:229625849:229631241:229631312,	229625702	229625849	229625722	229625722	Nonsense_Mutation	G	A	p.Q392*
BLCA	TCGA-BT-A2LB-01	GRN	ENST00000053867.3,ENST00000586782.1,ENST00000589265.1,ENST00000592783.1,ENST00000591740.1,ENST00000587518.1,ENST00000588143.1,ENST00000593167.1	chr17	42426793:42426919:42427034:42427119:42427595:42427651,	42427035	42427119	42427117	42427117	Nonsense_Mutation	C	G	p.S116*
BLCA	TCGA-BT-A2LB-01	GRN	ENST00000587387.1	chr17	42426793:42426919:42426992:42427119:42427595:42427651,	42426993	42427119	42427117	42427117	Nonsense_Mutation	C	G	p.S116*
BLCA	TCGA-BT-A2LB-01	SPOCK3	ENST00000505187.1	chr4	167833844:167833894:167921499:167921614:167983642:167983688,167833844:167833894:167921499:167921614:168155135:168155206,	167921500	167921614	167921549	167921549	Nonsense_Mutation	G	A	p.Q104*
BLCA	TCGA-BT-A2LB-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112154981	112154981	Nonsense_Mutation	G	T	p.E418*
BLCA	TCGA-BT-A2LB-01	FARP1	ENST00000595437.1,ENST00000376586.2,ENST00000319562.6	chr13	99076825:99076904:99083296:99083534:99087829:99087960,	99083297	99083534	99083317	99083317	Nonsense_Mutation	G	A	p.W642*
BLCA	TCGA-BT-A2LB-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805190	22805190	Nonsense_Mutation	C	A	p.E898*
BLCA	TCGA-BT-A2LB-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29677200:29677336:29679274:29679432:29683477:29683529,	29679275	29679432	29679408	29679408	Nonsense_Mutation	C	T	p.Q2531*
BLCA	TCGA-BT-A2LB-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160255339:160255405:160257109:160257175:160261359:160261421,	160257110	160257175	160257124	160257124	Nonsense_Mutation	G	A	p.Q962*
BLCA	TCGA-BT-A2LB-01	AMOTL1	ENST00000433060.2,ENST00000317829.8	chr11	94532555:94533477:94554695:94554987:94563215:94563315,	94554696	94554987	94554952	94554952	Nonsense_Mutation	C	T	p.Q460*
BLCA	TCGA-BT-A3PH-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
BLCA	TCGA-BT-A3PH-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111175	105111175	Nonsense_Mutation	G	C	p.S453*
BLCA	TCGA-BT-A3PH-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12123624	12123624	Nonsense_Mutation	C	G	p.S1199*
BLCA	TCGA-BT-A3PH-01	PIGG	ENST00000310340.5,ENST00000383028.4,ENST00000296306.7,ENST00000453061.2,ENST00000504346.1	chr4	515678:515730:517247:517702:520827:521019,	517248	517702	517589	517589	Nonsense_Mutation	G	A	p.W652*
BLCA	TCGA-BT-A3PH-01	TMEM159	ENST00000261388.3,ENST00000574092.1	chr16	21170030:21170067:21172298:21172599:21181757:21181926,	21172299	21172599	21172532	21172532	Nonsense_Mutation	C	G	p.S10*
BLCA	TCGA-BT-A3PH-01	TMEM159	ENST00000233047.4,ENST00000572258.1	chr16	21170030:21170067:21172405:21172599:21181757:21181926,	21172406	21172599	21172532	21172532	Nonsense_Mutation	C	G	p.S10*
BLCA	TCGA-BT-A3PH-01	NAA25	ENST00000552527.1,ENST00000549711.1	chr12	112528529:112528668:112530854:112530940:112546519:112546547,	112530855	112530940	112530905	112530905	Nonsense_Mutation	G	A	p.Q32*
BLCA	TCGA-BT-A3PH-01	DNAH3	ENST00000261383.3,ENST00000396036.1,ENST00000415178.1	chr16	21133265:21133445:21136495:21136691:21139007:21139133,	21136496	21136691	21136611	21136611	Nonsense_Mutation	G	C	p.S430*
BLCA	TCGA-BT-A3PH-01	NF1	ENST00000495910.2,ENST00000358273.4,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29553452:29553702:29554235:29554309:29554540:29554624,	29554236	29554309	29554250	29554250	Nonsense_Mutation	C	T	p.Q756*
BLCA	TCGA-BT-A3PH-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485180	35485180	Nonsense_Mutation	G	A	p.Q68*
BLCA	TCGA-BT-A3PJ-01	FAM98A	ENST00000238823.8,ENST00000403368.1	chr2	33812306:33812387:33813401:33813586:33817146:33817281,	33813402	33813586	33813494	33813494	Nonsense_Mutation	G	A	p.Q144*
BLCA	TCGA-BT-A3PJ-01	ATG14	ENST00000247178.5	chr14	55848679:55848909:55852576:55852814:55857628:55857710,	55852577	55852814	55852662	55852662	Nonsense_Mutation	C	A	p.E188*
BLCA	TCGA-BT-A3PJ-01	WAC	ENST00000347934.4	chr10	28884855:28884970:28897114:28897360:28899627:28899639,28879650:28879761:28897114:28897360:28899627:28899639,	28897115	28897360	28897267	28897267	Nonsense_Mutation	C	T	p.Q313*
BLCA	TCGA-BT-A3PJ-01	BIRC6	ENST00000465130.1,ENST00000471232.1,ENST00000421745.2	chr2	32828072:32828150:32832521:32832710:32836514:32836648,	32832522	32832710	32832645	32832645	Nonsense_Mutation	C	T	p.R4732*
BLCA	TCGA-BT-A3PJ-01	ATF1	ENST00000262053.3,ENST00000552487.1	chr12	51203238:51203372:51207792:51207975:51208062:51208151,	51207793	51207975	51207891	51207891	Nonsense_Mutation	C	T	p.Q143*
BLCA	TCGA-BT-A3PJ-01	IDH1	ENST00000446179.1,ENST00000345146.2,ENST00000415913.1	chr2	209106717:209106869:209108150:209108328:209110042:209110148,	209108151	209108328	209108167	209108167	Nonsense_Mutation	G	A	p.Q228*
BLCA	TCGA-BT-A3PJ-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31613172:31613315:31632522:31633189:31648743:31648836,	31632523	31633189	31632937	31632937	Nonsense_Mutation	C	A	p.E164*
BLCA	TCGA-BT-A3PJ-01	SCRN3	ENST00000458563.1	chr2	175260470:175260545:175263002:175263170:175264649:175264826,175260519:175260717:175263002:175263170:175264649:175264831,175262063:175262132:175263002:175263170:175264649:175264831,	175263003	175263170	175263091	175263091	Nonsense_Mutation	C	G	p.S27*
BLCA	TCGA-BT-A3PK-01	NCOR1	ENST00000579606.1	chr17	15950303:15950407:15952158:15952299:15960827:15961037,	15952159	15952299	15952254	15952254	Nonsense_Mutation	G	C	p.Y2147*
BLCA	TCGA-BT-A3PK-01	NCOR1	ENST00000395857.3,ENST00000395851.1,ENST00000470782.1,ENST00000395849.2,ENST00000464381.1,ENST00000458113.2,ENST00000580554.1,ENST00000268712.3	chr17	15950303:15950407:15952158:15952302:15960827:15961037,	15952159	15952302	15952254	15952254	Nonsense_Mutation	G	C	p.Y2147*
BLCA	TCGA-BT-A3PK-01	RABEP2	ENST00000358201.4,ENST00000544477.1,ENST00000357573.6	chr16	28917339:28917517:28919929:28920085:28922208:28922307,	28919930	28920085	28919983	28919983	Nonsense_Mutation	G	A	p.Q398*
BLCA	TCGA-BT-A3PK-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529993	55529993	Nonsense_Mutation	C	T	p.Q226*
BLCA	TCGA-BT-A3PK-01	REEP3	ENST00000298249.4,ENST00000373758.4	chr10	65358932:65359043:65369946:65370094:65379414:65379560,	65369947	65370094	65369972	65369972	Nonsense_Mutation	T	G	p.L148*
BLCA	TCGA-BT-A3PK-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103228970:103229087:103270390:103270600:103306670:103306760,	103270391	103270600	103270433	103270433	Nonsense_Mutation	C	T	p.R4067*
BLCA	TCGA-BT-A3PK-01	FAM98C	ENST00000588348.1	chr19	38896014:38896061:38896158:38897717:38899390:38899680,	38896159	38897717	38896259	38896259	Nonsense_Mutation	G	A	p.W245*
BLCA	TCGA-BT-A3PK-01	FAM98C	ENST00000343358.7	chr19	38896014:38896061:38896158:38896275:38897549:38897717,38895547:38895753:38896158:38896275:38899390:38899680,	38896159	38896275	38896259	38896259	Nonsense_Mutation	G	A	p.W245*
BLCA	TCGA-BT-A42B-01	SKIL	ENST00000259119.4,ENST00000426052.2,ENST00000458537.3,ENST00000413427.2	chr3	170078999:170079217:170099031:170099129:170102320:170102415,	170099032	170099129	170099114	170099114	Nonsense_Mutation	C	G	p.S394*
BLCA	TCGA-BT-A42B-01	YWHAE	ENST00000486241.1	chr17	1248621:1248793:1268152:1268352:1303340:1303429,1257504:1257641:1268152:1268352:1303340:1303429,1265223:1265302:1268152:1268352:1273002:1273035,1265223:1265302:1268152:1268352:1303340:1303429,	1268153	1268352	1268269	1268269	Nonsense_Mutation	T	A	p.K50*
BLCA	TCGA-BT-A42B-01	YWHAE	ENST00000486241.1	chr17	1248621:1248793:1268152:1268352:1303340:1303429,1257504:1257641:1268152:1268352:1303340:1303429,1265223:1265302:1268152:1268352:1273002:1273035,1265223:1265302:1268152:1268352:1303340:1303429,	1268153	1268352	1268270	1268270	Nonsense_Mutation	A	T	p.Y49*
BLCA	TCGA-BT-A42B-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539564	187539564	Nonsense_Mutation	G	A	p.R2726*
BLCA	TCGA-BT-A42B-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000314425.5	chrX	70470281:70470576:70471027:70471094:70471407:70471451,	70471028	70471094	70471085	70471085	Nonsense_Mutation	C	A	p.E241*
BLCA	TCGA-BT-A42B-01	ARHGAP22	ENST00000417247.2,ENST00000249601.4,ENST00000417912.2,ENST00000374172.1,ENST00000435790.2,ENST00000374170.1,ENST00000460425.1	chr10	49654600:49654662:49658303:49659183:49661346:49661468,	49658304	49659183	49658321	49658321	Nonsense_Mutation	G	C	p.Y617*
BLCA	TCGA-BT-A42C-01	EDEM2	ENST00000542871.1	chr20	33714053:33714178:33719444:33719586:33721907:33721958,33714053:33714178:33719444:33719586:33722540:33722752,33714053:33714178:33719444:33719586:33730175:33730281,	33719445	33719586	33719493	33719493	Nonsense_Mutation	T	A	p.K225*
BLCA	TCGA-BT-A42C-01	ARMC3	ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23248330:23248503:23250812:23251007:23257234:23257271,	23250813	23251007	23250840	23250840	Nonsense_Mutation	G	T	p.E189*
BLCA	TCGA-BT-A42C-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84568398:84568483:84581843:84582130:84592655:84592785,	84581844	84582130	84581959	84581959	Nonsense_Mutation	G	T	p.E606*
BLCA	TCGA-BT-A42C-01	CLHC1	ENST00000407122.1,ENST00000406076.1,ENST00000401408.1,ENST00000428621.1,ENST00000406437.2	chr2	55404879:55404917:55407645:55407848:55433405:55433512,55404879:55404917:55407645:55407848:55408705:55408880,	55407646	55407848	55407749	55407749	Nonsense_Mutation	G	T	p.Y427*
BLCA	TCGA-BT-A42E-01	NBEAL1	ENST00000449802.1	chr2	204001321:204001497:204002884:204003038:204003342:204003471,	204002885	204003038	204002917	204002917	Nonsense_Mutation	C	G	p.S1504*
BLCA	TCGA-BT-A42E-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108164111:108164204:108165653:108165786:108168013:108168109,	108165654	108165786	108165783	108165783	Nonsense_Mutation	C	T	p.Q1636*
BLCA	TCGA-BT-A42E-01	GNB4	ENST00000232564.3,ENST00000468623.1,ENST00000497513.1	chr3	179134308:179134344:179137186:179137293:179138676:179138715,	179137187	179137293	179137286	179137286	Nonsense_Mutation	G	C	p.S35*
BLCA	TCGA-BT-A42F-01	KIF27	ENST00000297814.2	chr9	86485462:86485547:86495211:86495409:86498727:86498933,	86495212	86495409	86495304	86495304	Nonsense_Mutation	G	A	p.Q851*
BLCA	TCGA-BT-A42F-01	TMEM50A	ENST00000374358.4,ENST00000468704.1,ENST00000480937.1	chr1	25666993:25667070:25669451:25669564:25678116:25678145,	25669452	25669564	25669469	25669469	Nonsense_Mutation	G	A	p.W37*
BLCA	TCGA-BT-A42F-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41313097:41313323:41319793:41319934:41337101:41337244,	41319794	41319934	41319874	41319874	Nonsense_Mutation	G	A	p.Q990*
BLCA	TCGA-BT-A42F-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800147	28800147	Nonsense_Mutation	C	G	p.S302*
BLCA	TCGA-BT-A42F-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6,ENST00000532194.2,ENST00000525073.2	chr19	1058144:1058268:1058616:1058746:1058818:1058939,	1058617	1058746	1058721	1058721	Nonsense_Mutation	C	T	p.Q1752*
BLCA	TCGA-C4-A0EZ-01	ZSCAN10	ENST00000576985.1	chr16	3141764:3141829:3142542:3143005:3149190:3149229,3142229:3142317:3142542:3143005:3149190:3149229,	3142543	3143005	3142561	3142561	Nonsense_Mutation	G	A	p.Q79*
BLCA	TCGA-C4-A0EZ-01	DNAH5	ENST00000265104.4	chr5	13735926:13736041:13737360:13737604:13751186:13751369,	13737361	13737604	13737394	13737394	Nonsense_Mutation	G	A	p.Q3808*
BLCA	TCGA-C4-A0EZ-01	TRIM68	ENST00000533021.1	chr11	4624474:4624570:4626308:4626791:4629256:4629368,4623473:4623642:4626308:4626791:4629256:4629368,	4626309	4626791	4626603	4626603	Nonsense_Mutation	C	T	p.W44*
BLCA	TCGA-C4-A0EZ-01	TYW1	ENST00000359626.5,ENST00000361660.4	chr7	66474569:66474671:66479353:66479548:66482839:66482868,	66479354	66479548	66479465	66479465	Nonsense_Mutation	C	T	p.R163*
BLCA	TCGA-C4-A0EZ-01	MBTPS1	ENST00000569770.1,ENST00000343411.3,ENST00000565863.1	chr16	84115356:84115513:84118587:84118739:84120962:84121065,	84118588	84118739	84118642	84118642	Nonsense_Mutation	G	C	p.S411*
BLCA	TCGA-C4-A0F1-01	AGFG2	ENST00000474713.1,ENST00000300176.4	chr7	100148048:100148134:100150969:100151123:100151715:100151881,	100150970	100151123	100151098	100151098	Nonsense_Mutation	C	G	p.S187*
BLCA	TCGA-C4-A0F1-01	EIF5A	ENST00000336458.8,ENST00000336452.7,ENST00000416016.2,ENST00000571955.1,ENST00000573542.1,ENST00000576930.1,ENST00000419711.2,ENST00000573714.1	chr17	7214336:7214441:7214668:7214800:7214896:7214934,	7214669	7214800	7214697	7214697	Nonsense_Mutation	C	A	p.S100*
BLCA	TCGA-C4-A0F1-01	KMT2C	ENST00000558084.1,ENST00000262189.6	chr7	151853289:151853431:151855947:151856157:151859201:151859249,	151855948	151856157	151855998	151855998	Nonsense_Mutation	C	A	p.E3874*
BLCA	TCGA-C4-A0F6-01	DIP2B	ENST00000301180.5,ENST00000546719.1,ENST00000549620.1	chr12	51053976:51054102:51064968:51065181:51068256:51068412,	51064969	51065181	51065079	51065079	Nonsense_Mutation	C	T	p.Q180*
BLCA	TCGA-C4-A0F6-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347183	347183	Nonsense_Mutation	C	A	p.E610*
BLCA	TCGA-C4-A0F6-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584008.1	chr17	65338301:65338379:65340721:65340896:65341860:65341973,	65340722	65340896	65340841	65340841	Nonsense_Mutation	C	A	p.E322*
BLCA	TCGA-C4-A0F6-01	AASDH	ENST00000602986.1,ENST00000503808.1	chr4	57248642:57248763:57250235:57250507:57253527:57253589,57244313:57244630:57250235:57250507:57253527:57253589,	57250236	57250507	57250456	57250456	Nonsense_Mutation	G	A	p.Q4*
BLCA	TCGA-C4-A0F6-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390534	197390534	Nonsense_Mutation	C	T	p.R526*
BLCA	TCGA-C4-A0F6-01	NMD3	ENST00000473909.1,ENST00000472947.1,ENST00000476237.1,ENST00000351193.2,ENST00000460503.1,ENST00000463518.1,ENST00000468606.1,ENST00000493066.1,ENST00000460469.1	chr3	160939781:160939845:160942717:160942852:160945034:160945131,	160942718	160942852	160942825	160942825	Nonsense_Mutation	C	A	p.S51*
BLCA	TCGA-C4-A0F7-01	HSP90AB1	ENST00000353801.3	chr6	44214823:44214932:44216353:44216513:44217113:44217320,	44216354	44216513	44216418	44216418	Nonsense_Mutation	C	T	p.Q18*
BLCA	TCGA-CF-A1HR-01	LASP1	ENST00000318008.6,ENST00000584106.1,ENST00000435347.3,ENST00000419929.1	chr17	37034338:37034433:37046672:37046757:37054664:37054772,	37046673	37046757	37046755	37046755	Nonsense_Mutation	C	T	p.Q83*
BLCA	TCGA-CF-A1HR-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101309	27101309	Nonsense_Mutation	G	T	p.E1531*
BLCA	TCGA-CF-A1HR-01	TEX26	ENST00000531960.1,ENST00000380473.3	chr13	31540358:31540535:31543021:31543183:31548982:31549153,	31543022	31543183	31543165	31543165	Nonsense_Mutation	C	T	p.Q264*
BLCA	TCGA-CF-A1HR-01	ATXN7	ENST00000487717.1,ENST00000474112.1,ENST00000538065.1,ENST00000295900.6,ENST00000398590.3	chr3	63898838:63898901:63938054:63938159:63965590:63965843,	63938055	63938159	63938123	63938123	Nonsense_Mutation	C	T	p.Q155*
BLCA	TCGA-CF-A1HS-01	ICA1L	ENST00000358299.2,ENST00000392237.2	chr2	203643792:203644371:203650640:203650730:203653552:203653810,	203650641	203650730	203650667	203650667	Nonsense_Mutation	G	C	p.S436*
BLCA	TCGA-CF-A1HS-01	PAIP1	ENST00000436644.2,ENST00000508537.1,ENST00000504639.1,ENST00000338972.4,ENST00000306846.3,ENST00000511321.1,ENST00000514514.1	chr5	43543162:43543218:43547829:43548015:43555931:43556063,	43547830	43548015	43547975	43547975	Nonsense_Mutation	G	C	p.S159*
BLCA	TCGA-CF-A1HS-01	EXOC3	ENST00000315013.5,ENST00000511015.1,ENST00000503889.2,ENST00000512944.1	chr5	462074:462185:462271:462422:464404:464527,	462272	462422	462321	462321	Nonsense_Mutation	G	T	p.E518*
BLCA	TCGA-CF-A1HS-01	EXOC3	ENST00000515601.2	chr5	462074:462185:462271:462644:464404:464527,	462272	462644	462321	462321	Nonsense_Mutation	G	T	p.E518*
BLCA	TCGA-CF-A1HS-01	PARD6A	ENST00000458121.2	chr16	67694861:67695004:67695357:67695580:67695798:67696633,	67695358	67695580	67695398	67695398	Nonsense_Mutation	C	A	p.S35*
BLCA	TCGA-CF-A27C-01	ASXL1	ENST00000375687.4,ENST00000306058.5	chr20	31017140:31017234:31017703:31017856:31019123:31019287,	31017704	31017856	31017811	31017811	Nonsense_Mutation	C	T	p.Q225*
BLCA	TCGA-CF-A27C-01	MTTP	ENST00000265517.5,ENST00000511045.1,ENST00000506883.1,ENST00000457717.1	chr4	100504530:100504674:100510799:100510907:100512391:100512396,	100510800	100510907	100510816	100510816	Nonsense_Mutation	C	G	p.S137*
BLCA	TCGA-CF-A27C-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000470570.1,ENST00000366576.3	chr1	237058657:237058850:237060305:237060418:237060857:237061434,	237060306	237060418	237060354	237060354	Nonsense_Mutation	C	G	p.S1216*
BLCA	TCGA-CF-A3MG-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000592385.1,ENST00000336057.5,ENST00000225983.6	chr17	42164779:42165064:42165754:42165966:42168637:42168860,	42165755	42165966	42165952	42165952	Nonsense_Mutation	G	A	p.Q469*
BLCA	TCGA-CF-A3MG-01	STRBP	ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2	chr9	125895123:125895247:125898319:125898460:125898659:125898782,	125898320	125898460	125898322	125898322	Nonsense_Mutation	G	A	p.Q591*
BLCA	TCGA-CF-A3MG-01	TGFBRAP1	ENST00000258449.1,ENST00000393359.2	chr2	105896838:105897180:105900772:105900855:105912812:105912967,	105900773	105900855	105900801	105900801	Nonsense_Mutation	G	A	p.Q365*
BLCA	TCGA-CF-A3MI-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123215229:123215378:123217270:123217399:123220396:123220620,	123217271	123217399	123217380	123217380	Nonsense_Mutation	C	T	p.R1012*
BLCA	TCGA-CF-A47S-01	COL9A1	ENST00000357250.6,ENST00000370496.3	chr6	70993439:70993523:71003869:71004266:71009745:71009878,	71003870	71004266	71004166	71004166	Nonsense_Mutation	G	A	p.Q134*
BLCA	TCGA-CF-A47W-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155116142:155116273:155123104:155123281:155124677:155124757,	155123105	155123281	155123135	155123135	Nonsense_Mutation	C	T	p.Q213*
BLCA	TCGA-CF-A47X-01	SYK	ENST00000375754.4,ENST00000375746.1	chr9	93627329:93627379:93629412:93629481:93636485:93636573,	93629413	93629481	93629438	93629438	Nonsense_Mutation	C	G	p.S291*
BLCA	TCGA-CF-A47X-01	CREM	ENST00000429130.3,ENST00000479070.1,ENST00000395887.3,ENST00000395895.2	chr10	35468061:35468204:35477127:35477316:35495822:35495880,35468061:35468204:35477127:35477316:35490378:35490414,	35477128	35477316	35477263	35477263	Nonsense_Mutation	C	G	p.S231*
BLCA	TCGA-CF-A47X-01	DPYD	ENST00000370192.3	chr1	97771732:97771853:97839116:97839200:97847948:97848017,	97839117	97839200	97839179	97839179	Nonsense_Mutation	C	A	p.E666*
BLCA	TCGA-CF-A47X-01	OPHN1	ENST00000355520.5,ENST00000540071.1	chrX	67266503:67267005:67268257:67268299:67272381:67272432,	67268258	67268299	67268295	67268295	Nonsense_Mutation	G	A	p.Q794*
BLCA	TCGA-CF-A47X-01	DDB2	ENST00000378601.3,ENST00000256996.4	chr11	47238408:47238600:47254364:47254510:47256123:47256223,	47254365	47254510	47254498	47254498	Nonsense_Mutation	C	G	p.S197*
BLCA	TCGA-CF-A47X-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980326	201980326	Nonsense_Mutation	C	A	p.S21*
BLCA	TCGA-CF-A47X-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980326	201980326	Nonsense_Mutation	C	A	p.S21*
BLCA	TCGA-CF-A47X-01	USP4	ENST00000416417.1,ENST00000491791.1,ENST00000415188.1,ENST00000265560.4,ENST00000351842.4	chr3	49363151:49363278:49365118:49365249:49372901:49373029,	49365119	49365249	49365238	49365238	Nonsense_Mutation	G	A	p.Q81*
BLCA	TCGA-CF-A47X-01	ARHGEF3	ENST00000495373.1,ENST00000498517.1,ENST00000473779.1,ENST00000413728.2,ENST00000338458.4,ENST00000465659.1,ENST00000468727.1,ENST00000481422.1,ENST00000496106.1,ENST00000296315.3,ENST00000497267.1	chr3	56787531:56787594:56789008:56789179:56807736:56807844,	56789009	56789179	56789068	56789068	Nonsense_Mutation	C	A	p.E112*
BLCA	TCGA-CF-A47X-01	EPS8L1	ENST00000587901.1	chr19	55598144:55598256:55598722:55598803:55598895:55599057,	55598723	55598803	55598801	55598801	Nonsense_Mutation	G	T	p.E695*
BLCA	TCGA-CF-A47X-01	EPS8L1	ENST00000589362.1,ENST00000540810.1,ENST00000592102.1,ENST00000588359.1,ENST00000201647.6,ENST00000245618.5	chr19	55598144:55598256:55598670:55598803:55598895:55599057,	55598671	55598803	55598801	55598801	Nonsense_Mutation	G	T	p.E695*
BLCA	TCGA-CF-A47X-01	PTTG1IP	ENST00000445724.2	chr21	46281088:46281186:46285309:46285362:46293416:46293583,46271321:46271542:46285309:46285362:46293416:46293583,	46285310	46285362	46285354	46285354	Nonsense_Mutation	G	A	p.Q42*
BLCA	TCGA-CF-A47X-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150004897	150004897	Nonsense_Mutation	G	C	p.S443*
BLCA	TCGA-CF-A47X-01	MIPOL1	ENST00000539062.2,ENST00000556451.1,ENST00000327441.7,ENST00000536774.1,ENST00000396294.2,ENST00000545536.1,ENST00000537471.1	chr14	37777662:37777724:37838721:37838829:37892059:37892154,	37838722	37838829	37838803	37838803	Nonsense_Mutation	G	T	p.E304*
BLCA	TCGA-CF-A47X-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42237184	42237184	Nonsense_Mutation	G	A	p.Q49*
BLCA	TCGA-CF-A47X-01	CMSS1	ENST00000478909.1,ENST00000421999.2,ENST00000497345.1,ENST00000489081.1,ENST00000491299.1	chr3	99881196:99881276:99885178:99885238:99886581:99886684,	99885179	99885238	99885224	99885224	Nonsense_Mutation	C	G	p.S134*
BLCA	TCGA-CF-A47X-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348356	89348356	Nonsense_Mutation	C	A	p.E1532*
BLCA	TCGA-CF-A47X-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820936	3820936	Nonsense_Mutation	G	A	p.Q839*
BLCA	TCGA-CF-A47X-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15*
BLCA	TCGA-CF-A47Y-01	BRD2	ENST00000395289.2,ENST00000482914.1,ENST00000449085.2,ENST00000374831.4,ENST00000607833.1,ENST00000443797.2,ENST00000449025.1,ENST00000374825.4,ENST00000395287.1	chr6	32944189:32944241:32944338:32944713:32945218:32945347,	32944339	32944713	32944516	32944516	Nonsense_Mutation	C	T	p.Q335*
BLCA	TCGA-CF-A5U8-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40440406	40440406	Nonsense_Mutation	C	A	p.E169*
BLCA	TCGA-CF-A5UA-01	TRPV5	ENST00000439304.1,ENST00000442623.1	chr7	142627152:142627275:142627443:142627541:142630428:142630538,	142627444	142627541	142627453	142627453	Nonsense_Mutation	G	A	p.R73*
BLCA	TCGA-CF-A5UA-01	KIF12	ENST00000473174.1,ENST00000374118.3,ENST00000468460.1	chr9	116856632:116856735:116857302:116857407:116857493:116857612,	116857303	116857407	116857341	116857341	Nonsense_Mutation	G	A	p.R223*
BLCA	TCGA-CF-A7I0-01	BRF2	ENST00000520601.1	chr8	37704573:37704693:37706113:37706173:37707147:37707356,	37706114	37706173	37706159	37706159	Nonsense_Mutation	G	A	p.R57*
BLCA	TCGA-CF-A9FF-01	NIPA2	ENST00000398013.3,ENST00000337451.3,ENST00000398014.2	chr15	23014442:23014528:23019799:23019856:23021197:23021359,	23019800	23019856	23019854	23019854	Nonsense_Mutation	G	A	p.Q48*
BLCA	TCGA-CF-A9FF-01	USP48	ENST00000421625.2,ENST00000400301.1,ENST00000308271.9	chr1	22055104:22055212:22056196:22056325:22062938:22063118,	22056197	22056325	22056206	22056206	Nonsense_Mutation	G	A	p.Q431*
BLCA	TCGA-CF-A9FF-01	USP48	ENST00000529637.1	chr1	22055104:22055212:22056196:22056322:22062938:22063118,	22056197	22056322	22056206	22056206	Nonsense_Mutation	G	A	p.Q431*
BLCA	TCGA-CF-A9FF-01	DNAJC13	ENST00000260818.6	chr3	132233414:132233514:132235265:132235340:132235547:132235660,	132235266	132235340	132235271	132235271	Nonsense_Mutation	C	T	p.Q1831*
BLCA	TCGA-CF-A9FF-01	SCML1	ENST00000380041.3	chrX	17755670:17755800:17763575:17763659:17764137:17764218,17762190:17762339:17763575:17763659:17764137:17764218,	17763576	17763659	17763599	17763599	Nonsense_Mutation	C	A	p.Y19*
BLCA	TCGA-CF-A9FF-01	ADAMTS14	ENST00000373207.1	chr10	72432558:72432640:72434311:72434751:72462067:72462224,	72434312	72434751	72434641	72434641	Nonsense_Mutation	G	T	p.E138*
BLCA	TCGA-CF-A9FF-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229536	7229536	Nonsense_Mutation	C	T	p.Q402*
BLCA	TCGA-CF-A9FF-01	RBM27	ENST00000265271.5	chr5	145650516:145650621:145651045:145651237:145664184:145664295,	145651046	145651237	145651076	145651076	Nonsense_Mutation	C	T	p.R943*
BLCA	TCGA-CF-A9FF-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5789319	5789319	Nonsense_Mutation	C	G	p.S1312*
BLCA	TCGA-CF-A9FF-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171553557:171553665:171556141:171556360:171556786:171556890,	171556142	171556360	171556229	171556229	Nonsense_Mutation	C	T	p.Q2613*
BLCA	TCGA-CF-A9FF-01	GTF2B	ENST00000448623.1	chr1	89318906:89319029:89323055:89323170:89325564:89325694,	89323056	89323170	89323155	89323155	Nonsense_Mutation	G	T	p.S184*
BLCA	TCGA-CF-A9FF-01	GTF2B	ENST00000370500.5	chr1	89318906:89319029:89322888:89323170:89325564:89325694,	89322889	89323170	89323155	89323155	Nonsense_Mutation	G	T	p.S184*
BLCA	TCGA-CF-A9FF-01	FAM177A1	ENST00000382406.3,ENST00000396472.1,ENST00000280987.4,ENST00000554794.1,ENST00000553955.2	chr14	35522483:35522657:35546355:35546422:35548132:35548218,	35546356	35546422	35546420	35546420	Nonsense_Mutation	C	A	p.S112*
BLCA	TCGA-CF-A9FM-01	KLHDC2	ENST00000298307.5,ENST00000555443.1,ENST00000553579.1,ENST00000554115.1	chr14	50247420:50247493:50249087:50249175:50249259:50249312,	50249088	50249175	50249092	50249092	Nonsense_Mutation	T	G	p.Y296*
BLCA	TCGA-CU-A0YN-01	TTK	ENST00000230510.3,ENST00000369798.2,ENST00000509894.1	chr6	80721602:80721697:80722995:80723083:80724179:80724303,	80722996	80723083	80723066	80723066	Nonsense_Mutation	G	T	p.E323*
BLCA	TCGA-CU-A0YO-01	GLO1	ENST00000373365.4,ENST00000470973.1	chr6	38643718:38645159:38649787:38649877:38650583:38650651,	38649788	38649877	38649846	38649846	Nonsense_Mutation	G	T	p.Y136*
BLCA	TCGA-CU-A0YO-01	SF3B3	ENST00000302516.5,ENST00000572365.1	chr16	70573006:70573110:70575571:70575737:70578340:70578436,	70575572	70575737	70575582	70575582	Nonsense_Mutation	C	T	p.Q360*
BLCA	TCGA-CU-A0YO-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41366567:41366763:41371898:41372102:41373217:41373271,	41371899	41372102	41372084	41372084	Nonsense_Mutation	T	A	p.K316*
BLCA	TCGA-CU-A0YO-01	PHF6	ENST00000332070.3,ENST00000394292.1,ENST00000370799.1,ENST00000370800.4,ENST00000370803.3	chrX	133511601:133511785:133512034:133512136:133527530:133527664,	133512035	133512136	133512098	133512098	Nonsense_Mutation	G	T	p.E68*
BLCA	TCGA-CU-A0YR-01	CNOT2	ENST00000418359.3,ENST00000550160.1,ENST00000547321.1,ENST00000548021.1,ENST00000547780.1,ENST00000549443.1,ENST00000552915.1,ENST00000229195.3	chr12	70637228:70637260:70671911:70672054:70704674:70704703,	70671912	70672054	70672040	70672040	Nonsense_Mutation	A	T	p.K12*
BLCA	TCGA-CU-A0YR-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38266203:38266472:38320073:38320592:38357092:38357470,	38320074	38320592	38320157	38320157	Nonsense_Mutation	G	A	p.R272*
BLCA	TCGA-CU-A3KJ-01	SRRT	ENST00000448764.1,ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100482915:100482991:100483321:100483383:100483483:100483562,	100483322	100483383	100483362	100483362	Nonsense_Mutation	C	G	p.S452*
BLCA	TCGA-CU-A3KJ-01	SRRT	ENST00000449389.1	chr7	100482915:100482991:100483321:100483395:100483483:100483562,	100483322	100483395	100483362	100483362	Nonsense_Mutation	C	G	p.S452*
BLCA	TCGA-CU-A3QU-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35852603:35852879:35853054:35853205:35854510:35854683,	35853055	35853205	35853067	35853067	Nonsense_Mutation	C	T	p.Q709*
BLCA	TCGA-CU-A3YL-01	MFSD11	ENST00000355954.3,ENST00000588460.1,ENST00000593181.1,ENST00000590514.1,ENST00000336509.4,ENST00000588768.1,ENST00000586622.1,ENST00000587661.1	chr17	74735019:74735075:74737038:74737146:74738050:74738130,	74737039	74737146	74737112	74737112	Nonsense_Mutation	C	T	p.Q76*
BLCA	TCGA-CU-A3YL-01	TMEM120B	ENST00000449592.2,ENST00000541467.1,ENST00000342607.6	chr12	122190034:122190129:122199554:122199644:122211326:122211419,122190034:122190129:122199554:122199644:122208812:122208878,	122199555	122199644	122199641	122199641	Nonsense_Mutation	C	G	p.S183*
BLCA	TCGA-CU-A3YL-01	VIT	ENST00000379241.3,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1	chr2	36986111:36986189:36994236:36994428:37000933:37000990,	36994237	36994428	36994239	36994239	Nonsense_Mutation	G	T	p.E164*
BLCA	TCGA-CU-A5W6-01	HDAC6	ENST00000334136.5,ENST00000376619.2,ENST00000444343.2,ENST00000477528.1,ENST00000486665.1,ENST00000486227.1	chrX	48676477:48676516:48676626:48676819:48678512:48678587,	48676627	48676819	48676746	48676746	Nonsense_Mutation	G	A	p.W705*
BLCA	TCGA-CU-A72E-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236374	33236374	Nonsense_Mutation	C	T	p.Q532*
BLCA	TCGA-CU-A72E-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47038501:47038562:47038717:47038894:47039278:47039436,	47038718	47038894	47038856	47038856	Nonsense_Mutation	C	G	p.S288*
BLCA	TCGA-CU-A72E-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551356	10551356	Nonsense_Mutation	C	A	p.S441*
BLCA	TCGA-DK-A1A3-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26854268:26854379:26856111:26856242:26857766:26857863,	26856112	26856242	26856166	26856166	Nonsense_Mutation	C	T	p.Q252*
BLCA	TCGA-DK-A1A3-01	MVB12B	ENST00000361171.3,ENST00000436593.3	chr9	129154344:129154474:129157853:129157976:129184132:129184227,	129157854	129157976	129157918	129157918	Nonsense_Mutation	C	T	p.Q202*
BLCA	TCGA-DK-A1A3-01	NAA25	ENST00000549711.1,ENST00000261745.4	chr12	112471036:112471183:112477032:112477143:112478284:112478382,	112477033	112477143	112477111	112477111	Nonsense_Mutation	G	T	p.Y857*
BLCA	TCGA-DK-A1A3-01	DNER	ENST00000341772.4	chr2	230312031:230312256:230341855:230341969:230377498:230377652,	230341856	230341969	230341868	230341868	Nonsense_Mutation	G	A	p.Q417*
BLCA	TCGA-DK-A1A3-01	SPATS2	ENST00000549412.1,ENST00000552557.1,ENST00000321898.6,ENST00000553127.1,ENST00000552918.1	chr12	49888523:49888785:49890615:49890792:49893852:49893988,	49890616	49890792	49890687	49890687	Nonsense_Mutation	C	T	p.Q200*
BLCA	TCGA-DK-A1A3-01	MTMR12	ENST00000382142.3	chr5	32230190:32230453:32233878:32234040:32235067:32235210,	32233879	32234040	32233926	32233926	Nonsense_Mutation	C	A	p.E543*
BLCA	TCGA-DK-A1A3-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
BLCA	TCGA-DK-A1A3-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31604873:31605410:31613127:31613315:31632522:31633189,	31613128	31613315	31613259	31613259	Nonsense_Mutation	G	A	p.Q321*
BLCA	TCGA-DK-A1A3-01	CHFR	ENST00000544268.1,ENST00000266880.7	chr12	133425226:133425310:133428203:133428320:133430016:133430075,	133428204	133428320	133428210	133428210	Nonsense_Mutation	G	A	p.Q507*
BLCA	TCGA-DK-A1A3-01	CHFR	ENST00000432561.2,ENST00000541837.2,ENST00000315585.7,ENST00000537522.1,ENST00000450056.2,ENST00000443047.2	chr12	133425226:133425310:133428203:133428323:133430016:133430075,	133428204	133428323	133428210	133428210	Nonsense_Mutation	G	A	p.Q507*
BLCA	TCGA-DK-A1A3-01	GTF2E2	ENST00000518445.1,ENST00000523499.1,ENST00000355904.4,ENST00000518599.1	chr8	30469986:30469998:30472124:30472232:30492548:30492640,	30472125	30472232	30472223	30472223	Nonsense_Mutation	G	A	p.Q90*
BLCA	TCGA-DK-A1A3-01	CHD2	ENST00000557381.1,ENST00000557759.1,ENST00000394196.4	chr15	93555574:93555674:93557925:93558139:93563241:93563303,	93557926	93558139	93558043	93558043	Nonsense_Mutation	C	T	p.Q1604*
BLCA	TCGA-DK-A1A5-01	MAGED2	ENST00000375060.1,ENST00000375058.1,ENST00000375068.1	chrX	54841093:54841208:54841680:54842123:54842313:54842440,	54841681	54842123	54841756	54841756	Nonsense_Mutation	G	T	p.E488*
BLCA	TCGA-DK-A1A6-06	FBXO25	ENST00000350302.3,ENST00000276326.5	chr8	381340:381444:385614:385707:399989:400083,382885:382935:385614:385707:399989:400083,	385615	385707	385664	385664	Nonsense_Mutation	C	G	p.S46*
BLCA	TCGA-DK-A1A6-06	TFAP2A	ENST00000478375.1,ENST00000482890.1,ENST00000466073.1,ENST00000379604.2,ENST00000379613.3	chr6	10407025:10407077:10410133:10410568:10415173:10415233,	10410134	10410568	10410427	10410427	Nonsense_Mutation	G	A	p.Q65*
BLCA	TCGA-DK-A1A6-06	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468800	86468800	Nonsense_Mutation	C	G	p.S657*
BLCA	TCGA-DK-A1A6-06	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131346560:131346804:131346999:131347122:131348026:131348244,	131347000	131347122	131347041	131347041	Nonsense_Mutation	C	T	p.Q827*
BLCA	TCGA-DK-A1A6-01	FBXO25	ENST00000350302.3,ENST00000276326.5	chr8	381340:381444:385614:385707:399989:400083,382885:382935:385614:385707:399989:400083,	385615	385707	385664	385664	Nonsense_Mutation	C	G	p.S46*
BLCA	TCGA-DK-A1A6-01	TFAP2A	ENST00000478375.1,ENST00000482890.1,ENST00000466073.1,ENST00000379604.2,ENST00000379613.3	chr6	10407025:10407077:10410133:10410568:10415173:10415233,	10410134	10410568	10410427	10410427	Nonsense_Mutation	G	A	p.Q65*
BLCA	TCGA-DK-A1A6-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468800	86468800	Nonsense_Mutation	C	G	p.S657*
BLCA	TCGA-DK-A1A6-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131346560:131346804:131346999:131347122:131348026:131348244,	131347000	131347122	131347041	131347041	Nonsense_Mutation	C	T	p.Q827*
BLCA	TCGA-DK-A1A7-01	GAD1	ENST00000358196.3,ENST00000493875.1	chr2	171693302:171693393:171700554:171700667:171702015:171702131,	171700555	171700667	171700564	171700564	Nonsense_Mutation	T	A	p.Y216*
BLCA	TCGA-DK-A1A7-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125299	47125299	Nonsense_Mutation	C	A	p.E1991*
BLCA	TCGA-DK-A1A7-01	RFWD3	ENST00000571750.1,ENST00000361070.4	chr16	74683029:74683100:74685817:74686020:74694829:74695349,	74685818	74686020	74685992	74685992	Nonsense_Mutation	G	A	p.Q183*
BLCA	TCGA-DK-A1AB-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578188	7578188	Nonsense_Mutation	C	A	p.E221*
BLCA	TCGA-DK-A1AB-01	PPP1R32	ENST00000338608.2,ENST00000535545.1	chr11	61253827:61253875:61253995:61254082:61254419:61254533,	61253996	61254082	61254053	61254053	Nonsense_Mutation	C	T	p.R269*
BLCA	TCGA-DK-A1AB-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17378911	17378911	Nonsense_Mutation	G	T	p.E488*
BLCA	TCGA-DK-A1AB-01	TRAPPC6B	ENST00000347691.5,ENST00000554018.1	chr14	39623414:39623498:39627488:39627606:39628653:39628754,39621014:39621043:39627488:39627606:39628653:39628754,39623414:39623498:39627488:39627606:39628686:39628754,39621014:39621043:39627488:39627606:39628686:39628754,	39627489	39627606	39627491	39627491	Nonsense_Mutation	G	A	p.Q89*
BLCA	TCGA-DK-A1AC-01	FCRLB	ENST00000367948.2,ENST00000392158.1	chr1	161695610:161695877:161696492:161696783:161697036:161697454,	161696493	161696783	161696695	161696695	Nonsense_Mutation	C	T	p.R225*
BLCA	TCGA-DK-A1AC-01	FCRLB	ENST00000336830.5,ENST00000367944.3	chr1	161695610:161695877:161696596:161696783:161697036:161697454,	161696597	161696783	161696695	161696695	Nonsense_Mutation	C	T	p.R225*
BLCA	TCGA-DK-A1AC-01	FCRLB	ENST00000367946.3,ENST00000367945.1	chr1	161695610:161695877:161696637:161696783:161697036:161697454,	161696638	161696783	161696695	161696695	Nonsense_Mutation	C	T	p.R225*
BLCA	TCGA-DK-A1AC-01	DAPK2	ENST00000558069.1,ENST00000558482.1,ENST00000457488.1	chr15	64275823:64275953:64332368:64332466:64338496:64338521,	64332369	64332466	64332447	64332447	Nonsense_Mutation	G	C	p.S5*
BLCA	TCGA-DK-A1AC-01	LETMD1	ENST00000547256.1	chr12	51442860:51442968:51450132:51450285:51453143:51453195,	51450133	51450285	51450271	51450271	Nonsense_Mutation	C	T	p.Q314*
BLCA	TCGA-DK-A1AC-01	DDI2	ENST00000486680.1,ENST00000480945.1	chr1	15953163:15953293:15956819:15957056:15959933:15960060,	15956820	15957056	15956939	15956939	Nonsense_Mutation	C	T	p.Q130*
BLCA	TCGA-DK-A1AC-01	OCEL1	ENST00000599286.1	chr19	17338648:17338814:17339064:17339118:17339817:17340024,17338648:17338814:17339064:17339118:17339611:17339635,17337966:17338008:17339064:17339118:17339611:17339635,17337966:17338008:17339064:17339118:17339817:17340024,	17339065	17339118	17339098	17339098	Nonsense_Mutation	G	T	p.E218*
BLCA	TCGA-DK-A1AC-01	EZR	ENST00000392177.4,ENST00000337147.7,ENST00000367075.3	chr6	159197439:159197536:159204551:159204698:159205675:159205759,	159204552	159204698	159204664	159204664	Nonsense_Mutation	G	A	p.Q196*
BLCA	TCGA-DK-A1AC-01	IPO4	ENST00000558780.1	chr14	24656605:24656785:24656872:24657019:24657421:24657463,	24656873	24657019	24656970	24656970	Nonsense_Mutation	G	T	p.S104*
BLCA	TCGA-DK-A1AC-01	IPO4	ENST00000559588.1,ENST00000561199.1,ENST00000558193.1,ENST00000560798.1,ENST00000558046.1,ENST00000561090.1,ENST00000560155.1,ENST00000354464.6	chr14	24656605:24656785:24656872:24657002:24657421:24657463,	24656873	24657002	24656970	24656970	Nonsense_Mutation	G	T	p.S104*
BLCA	TCGA-DK-A1AC-01	MME	ENST00000462745.1,ENST00000492661.1,ENST00000493237.1,ENST00000360490.2,ENST00000460393.1,ENST00000495577.1	chr3	154884690:154884810:154886280:154886414:154886520:154886586,	154886281	154886414	154886393	154886393	Nonsense_Mutation	G	A	p.W631*
BLCA	TCGA-DK-A1AC-01	CASP1	ENST00000436863.3,ENST00000533400.1,ENST00000532439.1,ENST00000527979.1,ENST00000393136.4,ENST00000598974.1,ENST00000525825.1,ENST00000593315.1,ENST00000526568.1,ENST00000529871.1	chr11	104897568:104897678:104899850:104899994:104900391:104900626,	104899851	104899994	104899926	104899926	Nonsense_Mutation	C	A	p.E311*
BLCA	TCGA-DK-A1AC-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359535	19359535	Nonsense_Mutation	G	T	p.E1222*
BLCA	TCGA-DK-A1AC-01	LHPP	ENST00000368839.1,ENST00000368842.5	chr10	126150411:126150556:126172707:126172895:126176990:126177144,	126172708	126172895	126172787	126172787	Nonsense_Mutation	C	T	p.Q69*
BLCA	TCGA-DK-A1AC-01	BMF	ENST00000354670.4,ENST00000397573.1,ENST00000561360.1,ENST00000561282.1	chr15	40383991:40384089:40396380:40396541:40397995:40398287,	40396381	40396541	40396422	40396422	Nonsense_Mutation	G	A	p.Q138*
BLCA	TCGA-DK-A1AC-01	SLC9A8	ENST00000541138.1	chr20	48456077:48456136:48466115:48466217:48471974:48472118,48461572:48461656:48466115:48466217:48471974:48472118,	48466116	48466217	48466215	48466215	Nonsense_Mutation	C	T	p.Q178*
BLCA	TCGA-DK-A1AC-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124080028	124080028	Nonsense_Mutation	G	A	p.Q219*
BLCA	TCGA-DK-A1AC-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562892	145562892	Nonsense_Mutation	T	G	p.Y860*
BLCA	TCGA-DK-A1AC-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155141310:155141467:155143409:155143543:155145367:155145512,	155143410	155143543	155143463	155143463	Nonsense_Mutation	C	T	p.Q616*
BLCA	TCGA-DK-A1AC-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351514	169351514	Nonsense_Mutation	G	T	p.E338*
BLCA	TCGA-DK-A1AC-01	MNAT1	ENST00000261245.4,ENST00000554002.1,ENST00000557134.1,ENST00000554641.1	chr14	61278704:61278845:61285439:61285565:61346431:61346553,	61285440	61285565	61285476	61285476	Nonsense_Mutation	C	T	p.Q200*
BLCA	TCGA-DK-A1AC-01	PHTF2	ENST00000454592.1,ENST00000307305.8,ENST00000415251.2,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2,ENST00000450574.1	chr7	77538109:77538275:77539561:77539726:77549595:77549782,	77539562	77539726	77539723	77539723	Nonsense_Mutation	C	G	p.S224*
BLCA	TCGA-DK-A1AC-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823271	155823271	Nonsense_Mutation	G	A	p.Q101*
BLCA	TCGA-DK-A1AC-01	TREML1	ENST00000426005.2	chr6	41119019:41119122:41121495:41121828:41121983:41122070,	41121496	41121828	41121535	41121535	Nonsense_Mutation	G	A	p.Q113*
BLCA	TCGA-DK-A1AC-01	FAHD2A	ENST00000447036.1,ENST00000233379.4	chr2	96071300:96071551:96072688:96072905:96076274:96076320,	96072689	96072905	96072879	96072879	Nonsense_Mutation	G	T	p.E146*
BLCA	TCGA-DK-A1AC-01	RCHY1	ENST00000514589.1,ENST00000513083.1,ENST00000505105.1,ENST00000451788.1,ENST00000513257.1,ENST00000504085.1	chr4	76434033:76434145:76434386:76434506:76439406:76439496,	76434387	76434506	76434446	76434446	Nonsense_Mutation	G	A	p.Q51*
BLCA	TCGA-DK-A1AC-01	GTF2A2	ENST00000396064.3	chr15	59934412:59934461:59942867:59942972:59944404:59944525,59931311:59931356:59942867:59942972:59944404:59944525,	59942868	59942972	59942969	59942969	Nonsense_Mutation	G	A	p.Q26*
BLCA	TCGA-DK-A1AC-01	MYH15	ENST00000273353.3	chr3	108099215:108100406:108102441:108102576:108103533:108103629,	108102442	108102576	108102561	108102561	Nonsense_Mutation	G	A	p.Q1903*
BLCA	TCGA-DK-A1AC-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662285	40662285	Nonsense_Mutation	C	G	p.S684*
BLCA	TCGA-DK-A1AC-01	ANO7	ENST00000274979.8	chr2	242130608:242130666:242135117:242135260:242138730:242138838,	242135118	242135260	242135138	242135138	Nonsense_Mutation	G	T	p.E117*
BLCA	TCGA-DK-A1AC-01	ANO7	ENST00000402430.3	chr2	242130608:242130666:242135120:242135260:242138730:242138838,	242135121	242135260	242135138	242135138	Nonsense_Mutation	G	T	p.E117*
BLCA	TCGA-DK-A1AD-01	TDRD3	ENST00000377881.2,ENST00000377882.3,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61041371:61041513:61057908:61057980:61059932:61060033,	61057909	61057980	61057916	61057916	Nonsense_Mutation	C	G	p.S75*
BLCA	TCGA-DK-A1AD-01	CREBBP	ENST00000571763.1,ENST00000576720.1,ENST00000262367.5,ENST00000382070.3	chr16	3781911:3781938:3786036:3786204:3786650:3786816,	3786037	3786204	3786148	3786148	Nonsense_Mutation	A	C	p.Y1539*
BLCA	TCGA-DK-A1AD-01	KATNAL1	ENST00000380615.3,ENST00000380617.3	chr13	30815095:30815223:30829583:30829752:30854199:30854360,	30829584	30829752	30829724	30829724	Nonsense_Mutation	G	A	p.R118*
BLCA	TCGA-DK-A1AE-01	POLA2	ENST00000527850.1,ENST00000532469.1,ENST00000265465.3,ENST00000541089.1	chr11	65043362:65043469:65046200:65046394:65047008:65047097,	65046201	65046394	65046238	65046238	Nonsense_Mutation	C	T	p.R167*
BLCA	TCGA-DK-A1AF-01	DNAJC3	ENST00000602402.1	chr13	96377431:96377506:96409897:96410050:96412293:96412475,	96409898	96410050	96409943	96409943	Nonsense_Mutation	C	T	p.Q147*
BLCA	TCGA-DK-A1AG-01	UBXN4	ENST00000272638.9	chr2	136513197:136513261:136519387:136519481:136527338:136527393,	136519388	136519481	136519444	136519444	Nonsense_Mutation	C	T	p.Q189*
BLCA	TCGA-DK-A2HX-01	ANKHD1	ENST00000435794.1,ENST00000360839.2,ENST00000297183.6	chr5	139907768:139909381:139914946:139915123:139916973:139917174,	139914947	139915123	139914968	139914968	Nonsense_Mutation	C	G	p.S2291*
BLCA	TCGA-DK-A2HX-01	SMC4	ENST00000469858.1,ENST00000344722.5,ENST00000462787.1,ENST00000360111.2,ENST00000357388.3,ENST00000462668.1,ENST00000469762.1	chr3	160135510:160135744:160137145:160137331:160138527:160138689,	160137146	160137331	160137215	160137215	Nonsense_Mutation	C	T	p.Q581*
BLCA	TCGA-DK-A2HX-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151727422:151727556:151729471:151729550:151738275:151738409,	151729472	151729550	151729481	151729481	Nonsense_Mutation	G	C	p.S1792*
BLCA	TCGA-DK-A2I1-01	SHISA5	ENST00000296444.2,ENST00000426002.1,ENST00000444115.1,ENST00000443308.2,ENST00000442747.1,ENST00000465449.1,ENST00000417962.1	chr3	48510166:48510585:48510759:48510972:48511126:48511242,	48510760	48510972	48510922	48510922	Nonsense_Mutation	G	A	p.Q161*
BLCA	TCGA-DK-A2I1-01	CSRNP2	ENST00000228515.1	chr12	51461681:51461752:51467605:51467865:51470193:51470430,	51467606	51467865	51467662	51467662	Nonsense_Mutation	G	A	p.R119*
BLCA	TCGA-DK-A2I1-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
BLCA	TCGA-DK-A2I1-01	EIF4ENIF1	ENST00000397525.1,ENST00000397523.1,ENST00000330125.5	chr22	31854460:31854636:31858917:31859119:31859666:31859953,	31858918	31859119	31859020	31859020	Nonsense_Mutation	G	A	p.Q229*
BLCA	TCGA-DK-A2I2-01	ECI2	ENST00000465828.1,ENST00000380120.2,ENST00000478266.2,ENST00000496241.2,ENST00000413766.2,ENST00000361538.2,ENST00000380125.2,ENST00000380118.3,ENST00000464057.1	chr6	4115941:4116263:4117541:4117685:4119419:4119509,	4117542	4117685	4117578	4117578	Nonsense_Mutation	C	T	p.W301*
BLCA	TCGA-DK-A2I2-01	ECI2	ENST00000464583.1	chr6	4115941:4116263:4117541:4119509:4125483:4125604,	4117542	4119509	4117578	4117578	Nonsense_Mutation	C	T	p.W301*
BLCA	TCGA-DK-A2I2-01	TOR2A	ENST00000373281.5,ENST00000373284.5	chr9	130495663:130495839:130496577:130496843:130497398:130497554,	130496578	130496843	130496823	130496823	Nonsense_Mutation	G	A	p.Q58*
BLCA	TCGA-DK-A2I2-01	SYBU	ENST00000424158.2,ENST00000419099.1,ENST00000433638.1,ENST00000446070.2,ENST00000532779.1,ENST00000533171.1,ENST00000408908.2,ENST00000528647.1,ENST00000422135.1,ENST00000276646.9,ENST00000440310.1,ENST00000529690.1,ENST00000533895.1,ENST00000408889.3,ENST00000533394.1,ENST00000399066.3,ENST00000528331.1,ENST00000533065.1	chr8	110590124:110590246:110592027:110592231:110598288:110598391,	110592028	110592231	110592172	110592172	Nonsense_Mutation	G	T	p.S194*
BLCA	TCGA-DK-A2I2-01	MFSD10	ENST00000507555.1,ENST00000508221.1,ENST00000507272.1,ENST00000514800.1,ENST00000329687.4,ENST00000512781.1,ENST00000355443.4,ENST00000509676.1	chr4	2933791:2933880:2934077:2934239:2934326:2934417,	2934078	2934239	2934086	2934086	Nonsense_Mutation	C	A	p.E229*
BLCA	TCGA-DK-A2I2-01	MFSD10	ENST00000503596.1	chr4	2933791:2933880:2934077:2934136:2934326:2934417,	2934078	2934136	2934086	2934086	Nonsense_Mutation	C	A	p.E229*
BLCA	TCGA-DK-A2I4-01	DHRS1	ENST00000559483.1,ENST00000288111.7,ENST00000561273.1,ENST00000558340.1,ENST00000560991.1	chr14	24765943:24766087:24768162:24768336:24768786:24768898,	24768163	24768336	24768168	24768168	Nonsense_Mutation	G	A	p.Q49*
BLCA	TCGA-DK-A2I4-01	VANGL2	ENST00000368061.2	chr1	160385851:160385972:160388791:160389399:160390200:160390337,	160388792	160389399	160389332	160389332	Nonsense_Mutation	C	T	p.Q245*
BLCA	TCGA-DK-A2I4-01	KCNQ5	ENST00000403813.2	chr6	73830279:73830300:73843143:73843364:73879468:73879577,	73843144	73843364	73843259	73843259	Nonsense_Mutation	G	T	p.E474*
BLCA	TCGA-DK-A2I4-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000357304.4	chr9	134305531:134305646:134308003:134308181:134312006:134312109,	134308004	134308181	134308165	134308165	Nonsense_Mutation	C	T	p.Q93*
BLCA	TCGA-DK-A2I4-01	PARD3	ENST00000374789.3,ENST00000374794.3,ENST00000545693.1,ENST00000545260.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34408540:34408668:34420390:34420511:34558584:34558827,	34420391	34420511	34420503	34420503	Nonsense_Mutation	G	C	p.S1146*
BLCA	TCGA-DK-A2I4-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63486765	63486765	Nonsense_Mutation	C	G	p.S264*
BLCA	TCGA-DK-A2I4-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63486765	63486765	Nonsense_Mutation	C	G	p.S264*
BLCA	TCGA-DK-A2I4-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315472	96315472	Nonsense_Mutation	C	A	p.S217*
BLCA	TCGA-DK-A2I4-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58117277	58117277	Nonsense_Mutation	G	A	p.W128*
BLCA	TCGA-DK-A2I4-01	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50616148	50616148	Nonsense_Mutation	C	A	p.E96*
BLCA	TCGA-DK-A2I4-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128404859:128404969:128410834:128411137:128505576:128505870,	128410835	128411137	128410865	128410865	Nonsense_Mutation	C	A	p.E479*
BLCA	TCGA-DK-A2I4-01	TNC	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1	chr9	117838668:117838854:117840221:117840491:117844050:117844207,	117840222	117840491	117840339	117840339	Nonsense_Mutation	C	A	p.E853*
BLCA	TCGA-DK-A2I4-01	KLHL5	ENST00000359687.2,ENST00000515612.1	chr4	39114639:39114852:39116778:39116950:39122629:39122825,39114639:39114852:39116778:39116950:39128313:39128415,	39116779	39116950	39116803	39116803	Nonsense_Mutation	G	A	p.W642*
BLCA	TCGA-DK-A2I4-01	ATXN2	ENST00000389153.4,ENST00000550236.1,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000392645.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111956052:111956231:111957682:111957880:111958685:111958749,	111957683	111957880	111957800	111957800	Nonsense_Mutation	G	C	p.S450*
BLCA	TCGA-DK-A2I4-01	MPZ	ENST00000491222.2,ENST00000336559.4,ENST00000533357.1,ENST00000360451.6,ENST00000463290.1	chr1	161276118:161276254:161276497:161276711:161277047:161277214,	161276498	161276711	161276525	161276525	Nonsense_Mutation	G	A	p.Q141*
BLCA	TCGA-DK-A2I4-01	PARP4	ENST00000381989.3	chr13	25066558:25066732:25067733:25067871:25068710:25068860,	25067734	25067871	25067846	25067846	Nonsense_Mutation	G	C	p.S256*
BLCA	TCGA-DK-A2I4-01	EYA3	ENST00000545175.1	chr1	28362054:28362191:28365349:28365416:28374893:28374937,	28365350	28365416	28365386	28365386	Nonsense_Mutation	G	T	p.S63*
BLCA	TCGA-DK-A2I4-01	ESRRA	ENST00000405666.1,ENST00000000442.6,ENST00000406310.1	chr11	64081755:64081839:64082472:64082742:64083178:64083362,64082215:64082383:64082472:64082742:64083178:64083362,	64082473	64082742	64082560	64082560	Nonsense_Mutation	C	G	p.S277*
BLCA	TCGA-DK-A2I4-01	SLC22A23	ENST00000380302.4,ENST00000467177.1,ENST00000406686.3,ENST00000485307.1,ENST00000497691.1,ENST00000490273.1	chr6	3284107:3284209:3285312:3285345:3287092:3287325,	3285313	3285345	3285315	3285315	Nonsense_Mutation	G	C	p.S526*
BLCA	TCGA-DK-A2I4-01	TOR1AIP1	ENST00000474875.1,ENST00000528443.2,ENST00000435319.4,ENST00000606911.2	chr1	179877739:179877808:179883132:179883189:179886586:179886860,	179883133	179883189	179883175	179883175	Nonsense_Mutation	C	G	p.S317*
BLCA	TCGA-DK-A2I4-01	UBAP2	ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33944512:33944637:33948371:33948585:33953282:33953472,	33948372	33948585	33948389	33948389	Nonsense_Mutation	G	T	p.S418*
BLCA	TCGA-DK-A2I4-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000557998.1,ENST00000348370.4,ENST00000561186.1	chr15	59350554:59350749:59358962:59359282:59368152:59368414,	59358963	59359282	59358969	59358969	Nonsense_Mutation	C	G	p.S458*
BLCA	TCGA-DK-A2I6-01	DLG4	ENST00000399510.2	chr17	7111492:7111558:7121559:7121600:7121859:7121958,	7121560	7121600	7121570	7121570	Nonsense_Mutation	G	C	p.S50*
BLCA	TCGA-DK-A2I6-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7632455:7632592:7635238:7635358:7635561:7635600,7633756:7633852:7635238:7635358:7635561:7635600,	7635239	7635358	7635263	7635263	Nonsense_Mutation	G	A	p.R1075*
BLCA	TCGA-DK-A2I6-01	RBM18	ENST00000483428.1,ENST00000417201.3	chr9	125007534:125007620:125009796:125009883:125014125:125014252,	125009797	125009883	125009805	125009805	Nonsense_Mutation	G	A	p.Q107*
BLCA	TCGA-DK-A2I6-01	MAP4K3	ENST00000495648.3,ENST00000341681.5,ENST00000536018.1,ENST00000437545.1,ENST00000263881.3	chr2	39499423:39499541:39499622:39499683:39505547:39505560,	39499623	39499683	39499674	39499674	Nonsense_Mutation	G	A	p.R602*
BLCA	TCGA-DK-A2I6-01	IKZF3	ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000535189.1	chr17	37944510:37944627:37947668:37947836:37985639:37985741,37944510:37944627:37947668:37947836:37948925:37949186,	37947669	37947836	37947792	37947792	Nonsense_Mutation	G	A	p.Q157*
BLCA	TCGA-DK-A3IK-01	HDDC3	ENST00000394272.3,ENST00000561036.1,ENST00000494993.1	chr15	91474566:91474635:91474933:91475174:91475284:91475340,	91474934	91475174	91475081	91475081	Nonsense_Mutation	C	A	p.E88*
BLCA	TCGA-DK-A3IL-01	PLXNB3	ENST00000538282.1,ENST00000361971.5,ENST00000538776.1,ENST00000538966.1	chrX	153038684:153038861:153038972:153039168:153039313:153039553,	153038973	153039168	153038980	153038980	Nonsense_Mutation	C	T	p.R1054*
BLCA	TCGA-DK-A3IL-01	SFTPB	ENST00000409383.1,ENST00000393822.3,ENST00000473692.1,ENST00000342375.3,ENST00000428225.1	chr2	85894228:85894300:85894801:85894929:85895239:85895295,	85894802	85894929	85894867	85894867	Nonsense_Mutation	C	A	p.E44*
BLCA	TCGA-DK-A3IL-01	USP32	ENST00000590133.1,ENST00000300896.4,ENST00000393003.3	chr17	58346810:58346918:58348710:58348842:58365883:58366043,	58348711	58348842	58348774	58348774	Nonsense_Mutation	G	A	p.R214*
BLCA	TCGA-DK-A3IM-01	KMT2D	ENST00000552391.1,ENST00000301067.7	chr12	49424383:49424551:49424675:49424816:49424957:49425095,	49424676	49424816	49424741	49424741	Nonsense_Mutation	G	A	p.R4536*
BLCA	TCGA-DK-A3IN-01	VSIG10	ENST00000536905.1	chr12	118520082:118520234:118533337:118533619:118540793:118540861,	118533338	118533619	118533368	118533368	Nonsense_Mutation	G	A	p.Q111*
BLCA	TCGA-DK-A3IN-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000581230.1,ENST00000578804.1,ENST00000583894.1,ENST00000577922.1,ENST00000581697.1,ENST00000540698.2	chr17	62499685:62499689:62499920:62499986:62500100:62500139,	62499921	62499986	62499953	62499953	Nonsense_Mutation	G	A	p.Q159*
BLCA	TCGA-DK-A3IQ-01	TSEN54	ENST00000580013.1,ENST00000333213.6	chr17	73512641:73512697:73512826:73512991:73513089:73513153,	73512827	73512991	73512921	73512921	Nonsense_Mutation	C	T	p.Q51*
BLCA	TCGA-DK-A3IQ-01	TSEN54	ENST00000583454.1	chr17	73512641:73512697:73512826:73513153:73513241:73513325,	73512827	73513153	73512921	73512921	Nonsense_Mutation	C	T	p.Q51*
BLCA	TCGA-DK-A3IQ-01	SIGIRR	ENST00000527295.1,ENST00000534217.1,ENST00000528209.1	chr11	407896:407957:408072:408206:408694:408851,407896:407957:408072:408206:409867:409977,	408073	408206	408082	408082	Nonsense_Mutation	G	A	p.Q111*
BLCA	TCGA-DK-A3IQ-01	ELAVL4	ENST00000448907.2,ENST00000371821.1,ENST00000371823.4,ENST00000371819.1,ENST00000357083.4,ENST00000371827.1,ENST00000371824.1	chr1	50610628:50610869:50642760:50642864:50659436:50659590,	50642761	50642864	50642770	50642770	Nonsense_Mutation	T	G	p.L87*
BLCA	TCGA-DK-A3IQ-01	PHACTR4	ENST00000373836.3,ENST00000373839.3	chr1	28818161:28818299:28819526:28819603:28823045:28823668,	28819527	28819603	28819542	28819542	Nonsense_Mutation	G	T	p.E678*
BLCA	TCGA-DK-A3IQ-01	LDLR	ENST00000558013.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1	chr19	11210898:11211021:11213339:11213462:11215895:11216276,	11213340	11213462	11213402	11213402	Nonsense_Mutation	C	T	p.Q85*
BLCA	TCGA-DK-A3IQ-01	CYP39A1	ENST00000275016.2	chr6	46605565:46605715:46607230:46607405:46609899:46610035,	46607231	46607405	46607286	46607286	Nonsense_Mutation	C	A	p.E145*
BLCA	TCGA-DK-A3IQ-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46565524:46565591:46567153:46567326:46568662:46568835,	46567154	46567326	46567257	46567257	Nonsense_Mutation	G	A	p.Q150*
BLCA	TCGA-DK-A3IS-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533413	94533413	Nonsense_Mutation	C	T	p.Q353*
BLCA	TCGA-DK-A3IS-01	IFT46	ENST00000531201.1,ENST00000264021.3,ENST00000264020.2	chr11	118415615:118415726:118416123:118416209:118416507:118416568,	118416124	118416209	118416128	118416128	Nonsense_Mutation	G	C	p.S323*
BLCA	TCGA-DK-A3IS-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000447398.1,ENST00000449767.1,ENST00000443864.2	chr7	44646237:44646252:44663915:44664164:44684925:44685117,	44663916	44664164	44664045	44664045	Nonsense_Mutation	C	T	p.Q35*
BLCA	TCGA-DK-A3IS-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2,ENST00000425511.1	chr13	75930282:75930387:75933904:75933994:75936161:75936743,	75933905	75933994	75933988	75933988	Nonsense_Mutation	G	A	p.R363*
BLCA	TCGA-DK-A3IT-01	CCDC120	ENST00000603986.1,ENST00000603906.1,ENST00000422185.2	chrX	48923277:48923376:48924711:48925626:48926079:48926305,	48924712	48925626	48925163	48925163	Nonsense_Mutation	G	T	p.E470*
BLCA	TCGA-DK-A3IT-01	CAPG	ENST00000409724.1,ENST00000409670.1,ENST00000263867.4,ENST00000483659.1	chr2	85625142:85625275:85625812:85625905:85626258:85626303,	85625813	85625905	85625866	85625866	Nonsense_Mutation	C	A	p.E236*
BLCA	TCGA-DK-A3IT-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115261233:115261366:115262199:115262363:115263159:115263338,	115262200	115262363	115262243	115262243	Nonsense_Mutation	G	A	p.Q771*
BLCA	TCGA-DK-A3IT-01	NTRK3	ENST00000317501.3,ENST00000540489.2	chr15	88483853:88483984:88576087:88576276:88669501:88669592,88524456:88524591:88576087:88576276:88669501:88669592,	88576088	88576276	88576243	88576243	Nonsense_Mutation	G	C	p.S477*
BLCA	TCGA-DK-A3IT-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831818	58831818	Nonsense_Mutation	C	G	p.S1004*
BLCA	TCGA-DK-A3IT-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662821	40662821	Nonsense_Mutation	C	T	p.Q863*
BLCA	TCGA-DK-A3IT-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991095	21991095	Nonsense_Mutation	G	A	p.Q923*
BLCA	TCGA-DK-A3IT-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383783	109383783	Nonsense_Mutation	C	G	p.S2263*
BLCA	TCGA-DK-A3IT-01	HIPK3	ENST00000303296.4	chr11	33369401:33369559:33370067:33370364:33370692:33370833,33369711:33369774:33370067:33370364:33370692:33370833,	33370068	33370364	33370177	33370177	Nonsense_Mutation	C	T	p.Q827*
BLCA	TCGA-DK-A3IT-01	SYMPK	ENST00000593504.1,ENST00000598896.1,ENST00000600237.1,ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46341850:46341873:46345507:46345747:46347287:46347458,	46345508	46345747	46345718	46345718	Nonsense_Mutation	G	A	p.Q293*
BLCA	TCGA-DK-A3IT-01	GOLGA2	ENST00000450617.1,ENST00000458730.1,ENST00000609374.1,ENST00000490257.1,ENST00000421699.2	chr9	131027863:131027970:131028066:131028160:131028248:131028299,	131028067	131028160	131028091	131028091	Nonsense_Mutation	G	A	p.Q241*
BLCA	TCGA-DK-A3IT-01	USPL1	ENST00000255304.4	chr13	31195900:31196029:31204971:31205611:31211880:31211994,	31204972	31205611	31205593	31205593	Nonsense_Mutation	C	T	p.Q284*
BLCA	TCGA-DK-A3IT-01	LAMA5	ENST00000252999.3	chr20	60899496:60899610:60900371:60900602:60901732:60901816,	60900372	60900602	60900379	60900379	Nonsense_Mutation	G	T	p.S1841*
BLCA	TCGA-DK-A3IU-01	FUS	ENST00000487509.2,ENST00000474990.1,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31200985:31201115:31201360:31201462:31201595:31201719,	31201361	31201462	31201394	31201394	Nonsense_Mutation	C	A	p.S367*
BLCA	TCGA-DK-A3IU-01	DST	ENST00000370754.5,ENST00000446842.2,ENST00000421834.2,ENST00000370769.4	chr6	56330875:56330993:56334662:56334755:56334925:56335080,	56334663	56334755	56334713	56334713	Nonsense_Mutation	G	A	p.Q7476*
BLCA	TCGA-DK-A3IU-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000554584.1	chr14	64453173:64453335:64457128:64457287:64457659:64457833,	64457129	64457287	64457211	64457211	Nonsense_Mutation	C	G	p.S799*
BLCA	TCGA-DK-A3IU-01	ANKRD30B	ENST00000320584.8,ENST00000358984.4	chr18	14848714:14848928:14850212:14850381:14851507:14852479,	14850213	14850381	14850274	14850274	Nonsense_Mutation	A	T	p.R1034*
BLCA	TCGA-DK-A3IU-01	GCKR	ENST00000472290.1,ENST00000424318.2,ENST00000264717.2	chr2	27726380:27726486:27728584:27728703:27729347:27729446,	27728585	27728703	27728699	27728699	Nonsense_Mutation	C	T	p.Q289*
BLCA	TCGA-DK-A3IU-01	PPFIA1	ENST00000527612.1,ENST00000528750.1,ENST00000526262.1,ENST00000389547.3,ENST00000532504.1,ENST00000253925.7,ENST00000530390.1	chr11	70201744:70201917:70202266:70202360:70208200:70208281,	70202267	70202360	70202353	70202353	Nonsense_Mutation	C	T	p.Q859*
BLCA	TCGA-DK-A3IU-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604796	160604796	Nonsense_Mutation	C	G	p.S332*
BLCA	TCGA-DK-A3IU-01	EFCAB12	ENST00000514900.1,ENST00000505956.1,ENST00000503498.1,ENST00000326085.3	chr3	129123092:129123246:129127487:129127701:129130000:129130197,	129127488	129127701	129127548	129127548	Nonsense_Mutation	G	A	p.Q397*
BLCA	TCGA-DK-A3IU-01	LMO7	ENST00000377499.5,ENST00000377534.3,ENST00000533305.1,ENST00000341547.4,ENST00000357063.3	chr13	76301164:76301234:76335067:76335174:76369536:76369567,	76335068	76335174	76335156	76335156	Nonsense_Mutation	C	G	p.S152*
BLCA	TCGA-DK-A3IV-01	SYTL2	ENST00000533057.1	chr11	85418471:85418574:85420373:85420420:85425455:85425492,	85420374	85420420	85420380	85420380	Nonsense_Mutation	G	C	p.S1511*
BLCA	TCGA-DK-A3IV-01	SYTL2	ENST00000524452.1,ENST00000527794.1,ENST00000389960.4,ENST00000530351.1,ENST00000533892.1	chr11	85418471:85418574:85420373:85420543:85425455:85425492,	85420374	85420543	85420380	85420380	Nonsense_Mutation	G	C	p.S1511*
BLCA	TCGA-DK-A3WW-01	ABCC12	ENST00000534418.1,ENST00000528693.1,ENST00000448542.1,ENST00000532494.1,ENST00000529504.1,ENST00000311303.3,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48158123:48158195:48162369:48162648:48164698:48164806,	48162370	48162648	48162609	48162609	Nonsense_Mutation	G	A	p.Q426*
BLCA	TCGA-DK-A3WW-01	C11orf49	ENST00000527667.1	chr11	47008758:47008861:47073938:47074069:47159195:47159280,46958330:46958402:47073938:47074069:47159195:47159280,47013093:47013198:47073938:47074069:47159195:47159280,	47073939	47074069	47073976	47073976	Nonsense_Mutation	C	T	p.R63*
BLCA	TCGA-DK-A3WW-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34064273:34064420:34065695:34065926:34067055:34067249,	34065696	34065926	34065849	34065849	Nonsense_Mutation	G	T	p.E673*
BLCA	TCGA-DK-A3WW-01	PMEL	ENST00000552882.1,ENST00000548747.1,ENST00000550447.1,ENST00000539511.1,ENST00000550464.1,ENST00000548493.1	chr12	56349057:56349145:56349247:56349453:56349562:56349647,	56349248	56349453	56349424	56349424	Nonsense_Mutation	G	C	p.S529*
BLCA	TCGA-DK-A3WW-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000527688.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104714868:104715094:104719114:104719207:104720124:104720201,	104719115	104719207	104719163	104719163	Nonsense_Mutation	C	T	p.Q324*
BLCA	TCGA-DK-A3WW-01	CYP3A43	ENST00000434806.1	chr7	99447601:99447722:99453213:99453341:99454455:99454522,	99453214	99453341	99453289	99453289	Nonsense_Mutation	T	A	p.L249*
BLCA	TCGA-DK-A3WW-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124515	12124515	Nonsense_Mutation	C	G	p.S1496*
BLCA	TCGA-DK-A3WW-01	ANAPC4	ENST00000510092.1,ENST00000315368.3,ENST00000515848.1	chr4	25418046:25418220:25419237:25419361:25419776:25419883,	25419238	25419361	25419344	25419344	Nonsense_Mutation	C	T	p.R728*
BLCA	TCGA-DK-A3WW-01	ATG14	ENST00000247178.5	chr14	55848679:55848909:55852576:55852814:55857628:55857710,	55852577	55852814	55852644	55852644	Nonsense_Mutation	G	A	p.R194*
BLCA	TCGA-DK-A3WW-01	ATF6	ENST00000367942.3	chr1	161751701:161751789:161753779:161753886:161761197:161761327,	161753780	161753886	161753803	161753803	Nonsense_Mutation	C	T	p.Q91*
BLCA	TCGA-DK-A3WW-01	ARMC9	ENST00000481520.1,ENST00000349938.4,ENST00000428662.1,ENST00000483477.1	chr2	232141348:232141488:232143094:232143171:232146771:232146846,	232143095	232143171	232143143	232143143	Nonsense_Mutation	C	A	p.S508*
BLCA	TCGA-DK-A3WW-01	PRDM16	ENST00000378391.2,ENST00000442529.2	chr1	3347435:3347672:3348529:3348704:3350240:3350489,3347435:3347672:3348529:3348704:3350297:3351985,	3348530	3348704	3348546	3348546	Nonsense_Mutation	G	T	p.E1180*
BLCA	TCGA-DK-A3WW-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148456639:148456730:148457424:148457588:148463652:148463815,	148457425	148457588	148457547	148457547	Nonsense_Mutation	G	T	p.E250*
BLCA	TCGA-DK-A3WW-01	IGSF21	ENST00000251296.1,ENST00000412684.1	chr1	18618359:18618481:18661385:18661504:18688608:18688724,	18661386	18661504	18661423	18661423	Nonsense_Mutation	G	T	p.E115*
BLCA	TCGA-DK-A3WW-01	F13A1	ENST00000264870.3	chr6	6144317:6146005:6152045:6152182:6167690:6167851,	6152046	6152182	6152170	6152170	Nonsense_Mutation	G	A	p.Q641*
BLCA	TCGA-DK-A3WW-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828402	72828402	Nonsense_Mutation	C	A	p.E2727*
BLCA	TCGA-DK-A3WW-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	145004103:145004230:145004311:145004466:145004551:145004704,	145004312	145004466	145004382	145004382	Nonsense_Mutation	C	A	p.E985*
BLCA	TCGA-DK-A3WW-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124427	76124427	Nonsense_Mutation	C	A	p.E88*
BLCA	TCGA-DK-A3WW-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34064273:34064420:34065695:34065926:34067055:34067249,	34065696	34065926	34065903	34065903	Nonsense_Mutation	G	T	p.E691*
BLCA	TCGA-DK-A3WW-01	NPHS2	ENST00000367615.4	chr1	179523610:179523666:179526161:179526365:179528813:179528896,	179526162	179526365	179526245	179526245	Nonsense_Mutation	G	A	p.Q219*
BLCA	TCGA-DK-A3WW-01	TMEM71	ENST00000523829.1,ENST00000356838.3	chr8	133734285:133734361:133740043:133740232:133759187:133759303,	133740044	133740232	133740098	133740098	Nonsense_Mutation	G	A	p.Q189*
BLCA	TCGA-DK-A3WW-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000432218.1,ENST00000337006.4,ENST00000376083.3	chr9	88236116:88236200:88247576:88248289:88257741:88257858,	88247577	88248289	88247959	88247959	Nonsense_Mutation	G	A	p.Q545*
BLCA	TCGA-DK-A3WY-01	TMPRSS2	ENST00000398585.3,ENST00000458356.1,ENST00000332149.5	chr21	42837935:42838080:42839660:42839813:42840322:42840465,	42839661	42839813	42839672	42839672	Nonsense_Mutation	G	A	p.R523*
BLCA	TCGA-DK-A3X1-01	PDCD2L	ENST00000246535.3,ENST00000587385.2	chr19	34904641:34904752:34912423:34912572:34916894:34917055,	34912424	34912572	34912527	34912527	Nonsense_Mutation	C	T	p.Q301*
BLCA	TCGA-DK-A3X1-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832521	39832521	Nonsense_Mutation	C	A	p.E346*
BLCA	TCGA-DK-A3X1-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832521	39832521	Nonsense_Mutation	C	A	p.E346*
BLCA	TCGA-DK-A3X1-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420241	49420241	Nonsense_Mutation	G	A	p.Q5170*
BLCA	TCGA-DK-A3X1-01	SLC13A3	ENST00000290317.5,ENST00000495082.1,ENST00000472148.1,ENST00000279027.4,ENST00000435032.1,ENST00000396360.1,ENST00000413164.2	chr20	45188632:45188837:45192052:45192190:45194867:45195029,	45192053	45192190	45192108	45192108	Nonsense_Mutation	G	T	p.S526*
BLCA	TCGA-DK-A3X1-01	PLD3	ENST00000409735.4,ENST00000598962.1,ENST00000600948.1,ENST00000409281.1,ENST00000493006.1	chr19	40871801:40871837:40872325:40872417:40872516:40872551,	40872326	40872417	40872415	40872415	Nonsense_Mutation	G	T	p.E9*
BLCA	TCGA-DK-A3X1-01	PLD3	ENST00000392032.2,ENST00000409587.1	chr19	40871801:40871837:40872290:40872417:40872516:40872551,	40872291	40872417	40872415	40872415	Nonsense_Mutation	G	T	p.E9*
BLCA	TCGA-DK-A3X1-01	TFG	ENST00000490574.1	chr3	100428449:100428565:100432486:100432713:100438818:100438902,100428221:100428275:100432486:100432713:100438818:100438902,	100432487	100432713	100432575	100432575	Nonsense_Mutation	C	T	p.Q16*
BLCA	TCGA-DK-A3X1-01	GNL2	ENST00000373062.3	chr1	38039943:38040057:38040265:38040424:38041195:38041300,	38040266	38040424	38040358	38040358	Nonsense_Mutation	C	A	p.E404*
BLCA	TCGA-DK-A3X1-01	ARFGAP3	ENST00000437119.2	chr22	43227554:43227642:43230247:43230331:43236949:43237022,	43230248	43230331	43230283	43230283	Nonsense_Mutation	C	A	p.E148*
BLCA	TCGA-DK-A3X1-01	TAF13	ENST00000338366.5	chr1	109608756:109608854:109617608:109617687:109618542:109618593,	109617609	109617687	109617651	109617651	Nonsense_Mutation	C	A	p.E22*
BLCA	TCGA-DK-A3X1-01	LZTS1	ENST00000381569.1,ENST00000522290.1,ENST00000265801.6	chr8	20107622:20107874:20110292:20111096:20112347:20112692,	20110293	20111096	20110394	20110394	Nonsense_Mutation	C	A	p.E350*
BLCA	TCGA-DK-A3X1-01	CFHR4	ENST00000367416.2,ENST00000367418.2,ENST00000251424.4	chr1	196881869:196882052:196883624:196883801:196884085:196884268,	196883625	196883801	196883726	196883726	Nonsense_Mutation	G	T	p.E427*
BLCA	TCGA-DK-A3X1-01	MBNL2	ENST00000343600.4,ENST00000376673.3,ENST00000397601.1,ENST00000469707.1,ENST00000345429.6	chr13	97928457:97928663:97986529:97986694:97995269:97995470,	97986530	97986694	97986587	97986587	Nonsense_Mutation	C	T	p.Q78*
BLCA	TCGA-DK-A3X1-01	LDLRAD3	ENST00000315571.5,ENST00000528989.1	chr11	36119879:36120011:36248634:36248980:36250709:36250761,	36248635	36248980	36248961	36248961	Nonsense_Mutation	G	T	p.E261*
BLCA	TCGA-DK-A3X1-01	CHD8	ENST00000557364.1	chr14	21897295:21897494:21898959:21900017:21924190:21924239,	21898960	21900017	21899343	21899343	Nonsense_Mutation	G	A	p.Q154*
BLCA	TCGA-DK-A3X1-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516055	195516055	Nonsense_Mutation	G	T	p.S799*
BLCA	TCGA-DK-A3X1-01	MICALL1	ENST00000454685.1	chr22	38321853:38322050:38323417:38323827:38327805:38327940,	38323418	38323827	38323565	38323565	Nonsense_Mutation	C	G	p.S538*
BLCA	TCGA-DK-A3X1-01	MICALL1	ENST00000215957.6	chr22	38321853:38322050:38323417:38323833:38327805:38327940,	38323418	38323833	38323565	38323565	Nonsense_Mutation	C	G	p.S538*
BLCA	TCGA-DK-A3X1-01	TIMD4	ENST00000274532.2	chr5	156353273:156353323:156375426:156375510:156376661:156376742,	156375427	156375510	156375436	156375436	Nonsense_Mutation	G	A	p.Q279*
BLCA	TCGA-DK-A3X1-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132306	49132306	Nonsense_Mutation	C	A	p.S476*
BLCA	TCGA-DK-A3X1-01	ST18	ENST00000521824.1,ENST00000276480.7,ENST00000522251.1,ENST00000521582.1	chr8	53055489:53055605:53062291:53062537:53071457:53071669,	53062292	53062537	53062372	53062372	Nonsense_Mutation	G	A	p.Q658*
BLCA	TCGA-DK-A3X2-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439898	52439898	Nonsense_Mutation	G	A	p.Q272*
BLCA	TCGA-DK-A3X2-01	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000469607.1,ENST00000329066.4,ENST00000422464.1,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3,ENST00000346956.3	chr2	1497573:1497811:1499760:1499969:1500366:1500537,	1499761	1499969	1499950	1499950	Nonsense_Mutation	G	A	p.W732*
BLCA	TCGA-DK-A3X2-01	GALNT11	ENST00000422997.2,ENST00000434507.1,ENST00000430044.2,ENST00000447778.1,ENST00000452146.2,ENST00000320311.2	chr7	151800196:151800363:151802329:151802455:151805122:151805372,	151802330	151802455	151802370	151802370	Nonsense_Mutation	C	A	p.Y209*
BLCA	TCGA-DK-A6AV-01	ALMS1	ENST00000423048.1	chr2	73682288:73682422:73716760:73717285:73746901:73747143,	73716761	73717285	73717128	73717128	Nonsense_Mutation	C	G	p.S2680*
BLCA	TCGA-DK-A6AV-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717128	73717128	Nonsense_Mutation	C	G	p.S2680*
BLCA	TCGA-DK-A6AW-01	RPF2	ENST00000441448.2	chr6	111303252:111303332:111306208:111306341:111310230:111310268,	111306209	111306341	111306252	111306252	Nonsense_Mutation	G	T	p.E23*
BLCA	TCGA-DK-A6AW-01	DNAJC24	ENST00000465995.1	chr11	31436357:31436496:31447833:31447902:31451817:31451950,	31447834	31447902	31447884	31447884	Nonsense_Mutation	G	T	p.E101*
BLCA	TCGA-DK-A6AW-01	CENPN	ENST00000299572.5	chr16	81051362:81051439:81053704:81053881:81056359:81056490,	81053705	81053881	81053750	81053750	Nonsense_Mutation	C	T	p.R134*
BLCA	TCGA-DK-A6AW-01	NEK5	ENST00000355568.4	chr13	52657395:52657488:52660412:52660499:52661473:52661590,	52660413	52660499	52660445	52660445	Nonsense_Mutation	C	A	p.E483*
BLCA	TCGA-DK-A6AW-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108114679:108114845:108115514:108115753:108117690:108117854,	108115515	108115753	108115600	108115600	Nonsense_Mutation	C	T	p.R250*
BLCA	TCGA-DK-A6AW-01	CPSF2	ENST00000298875.4	chr14	92604575:92604691:92608507:92608695:92609347:92609638,	92608508	92608695	92608528	92608528	Nonsense_Mutation	C	T	p.R228*
BLCA	TCGA-DK-A6AW-01	RBM27	ENST00000265271.5	chr5	145583162:145583387:145598547:145598666:145602965:145603090,	145598548	145598666	145598618	145598618	Nonsense_Mutation	G	T	p.E44*
BLCA	TCGA-DK-A6AW-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467368	58467368	Nonsense_Mutation	T	A	p.K681*
BLCA	TCGA-DK-A6AW-01	CHD1	ENST00000284049.3	chr5	98208120:98208259:98209296:98209427:98210775:98210817,	98209297	98209427	98209360	98209360	Nonsense_Mutation	C	A	p.E1170*
BLCA	TCGA-DK-A6AW-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62214595:62214961:62217654:62217747:62219289:62219519,	62217655	62217747	62217669	62217669	Nonsense_Mutation	C	A	p.E2199*
BLCA	TCGA-DK-A6AW-01	METTL6	ENST00000443029.1	chr3	15425408:15425694:15452751:15452944:15455527:15455604,	15452752	15452944	15452882	15452882	Nonsense_Mutation	G	A	p.R246*
BLCA	TCGA-DK-A6AW-01	CTNNA3	ENST00000330298.6,ENST00000545309.1,ENST00000433211.2,ENST00000373744.4	chr10	69299260:69299427:69366614:69366807:69407172:69407271,	69366615	69366807	69366618	69366618	Nonsense_Mutation	C	A	p.E97*
BLCA	TCGA-DK-A6AW-01	SPTBN1	ENST00000356805.4,ENST00000389980.3	chr2	54785530:54786024:54826228:54826380:54839297:54839471,54753508:54753703:54826228:54826380:54839297:54839471,	54826229	54826380	54826327	54826327	Nonsense_Mutation	C	T	p.R70*
BLCA	TCGA-DK-A6AW-01	USP54	ENST00000466048.2,ENST00000498143.1,ENST00000424265.1,ENST00000497106.1,ENST00000339859.4,ENST00000418501.1,ENST00000394811.2,ENST00000408019.1,ENST00000428547.1	chr10	75286404:75286538:75289437:75289669:75289900:75290169,	75289438	75289669	75289664	75289664	Nonsense_Mutation	C	A	p.E612*
BLCA	TCGA-DK-A6AW-01	AKIRIN2	ENST00000257787.5	chr6	88385577:88385649:88387535:88387685:88391337:88391481,	88387536	88387685	88387650	88387650	Nonsense_Mutation	C	A	p.E139*
BLCA	TCGA-DK-A6AW-01	SYNPO2	ENST00000434046.2,ENST00000307142.4,ENST00000504178.1,ENST00000429713.2	chr4	119944625:119944736:119947781:119948593:119950999:119953008,	119947782	119948593	119947996	119947996	Nonsense_Mutation	G	T	p.E158*
BLCA	TCGA-DK-A6AW-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000544292.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34673056:34673182:34688257:34688341:34690753:34690845,	34688258	34688341	34688322	34688322	Nonsense_Mutation	C	A	p.E276*
BLCA	TCGA-DK-A6AW-01	INTS8	ENST00000523206.1,ENST00000524333.1	chr8	95844219:95844402:95848751:95848859:95850690:95850846,95844219:95844402:95848751:95848859:95850721:95850846,	95848752	95848859	95848845	95848845	Nonsense_Mutation	G	T	p.E283*
BLCA	TCGA-DK-A6AW-01	RAPGEF5	ENST00000405243.1,ENST00000475788.1,ENST00000344041.6	chr7	22233532:22233651:22259484:22259610:22270464:22270538,	22259485	22259610	22259538	22259538	Nonsense_Mutation	C	A	p.E162*
BLCA	TCGA-DK-A6AW-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379282	29379282	Nonsense_Mutation	G	T	p.E410*
BLCA	TCGA-DK-A6AW-01	LRP6	ENST00000543091.1	chr12	12356136:12356334:12397195:12397589:12419614:12419703,	12397196	12397589	12397410	12397410	Nonsense_Mutation	C	A	p.E79*
BLCA	TCGA-DK-A6AW-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21395842:21396017:21396270:21396428:21401205:21401318,	21396271	21396428	21396422	21396422	Nonsense_Mutation	G	A	p.R283*
BLCA	TCGA-DK-A6AW-01	SPINK5	ENST00000398454.1,ENST00000256084.7,ENST00000359874.3	chr5	147499857:147499954:147503395:147503523:147504327:147504400,	147503396	147503523	147503468	147503468	Nonsense_Mutation	C	T	p.R871*
BLCA	TCGA-DK-A6AW-01	GGA3	ENST00000584243.1,ENST00000582717.1,ENST00000579743.1,ENST00000245541.6,ENST00000537584.2,ENST00000584978.1,ENST00000582486.1,ENST00000537686.1,ENST00000582200.1	chr17	73239597:73239651:73240699:73240798:73242589:73242665,	73240700	73240798	73240753	73240753	Nonsense_Mutation	C	A	p.E83*
BLCA	TCGA-DK-A6AW-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099153	133099153	Nonsense_Mutation	C	T	p.R200*
BLCA	TCGA-DK-A6AW-01	MEI1	ENST00000401548.3,ENST00000540833.1,ENST00000300398.4,ENST00000400107.1	chr22	42128476:42128607:42139083:42139198:42140976:42141068,	42139084	42139198	42139154	42139154	Nonsense_Mutation	C	T	p.R468*
BLCA	TCGA-DK-A6AW-01	JAK2	ENST00000539801.1,ENST00000381652.3,ENST00000544510.1	chr9	5123003:5123121:5126332:5126446:5126683:5126814,	5126333	5126446	5126418	5126418	Nonsense_Mutation	T	G	p.L1088*
BLCA	TCGA-DK-A6AW-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47537787:47537850:47538527:47538590:47538943:47539033,	47538528	47538590	47538567	47538567	Nonsense_Mutation	G	T	p.E386*
BLCA	TCGA-DK-A6AW-01	KLHL2	ENST00000509704.1,ENST00000226725.6,ENST00000514860.1	chr4	166141152:166141211:166149958:166150065:166184348:166184433,166141152:166141211:166149958:166150065:166159929:166159983,	166149959	166150065	166150063	166150063	Nonsense_Mutation	C	T	p.Q30*
BLCA	TCGA-DK-A6AW-01	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36253748:36253891:36255571:36255692:36257042:36257173,	36255572	36255692	36255644	36255644	Nonsense_Mutation	C	A	p.E318*
BLCA	TCGA-DK-A6AW-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586884	143586884	Nonsense_Mutation	G	T	p.E203*
BLCA	TCGA-DK-A6AW-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789685	3789685	Nonsense_Mutation	G	A	p.R1392*
BLCA	TCGA-DK-A6AW-01	DDO	ENST00000368924.3	chr6	110712973:110714545:110725976:110726153:110729536:110729645,	110725977	110726153	110726086	110726086	Nonsense_Mutation	G	A	p.R145*
BLCA	TCGA-DK-A6AW-01	TXNDC12	ENST00000371626.4,ENST00000472624.1	chr1	52489162:52489246:52490181:52490251:52492946:52493020,	52490182	52490251	52490248	52490248	Nonsense_Mutation	C	A	p.E97*
BLCA	TCGA-DK-A6AW-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998123	169998123	Nonsense_Mutation	C	T	p.R272*
BLCA	TCGA-DK-A6AW-01	NFYC	ENST00000372669.4,ENST00000372654.1,ENST00000467203.1,ENST00000308733.5,ENST00000440226.3,ENST00000425457.2,ENST00000456393.2,ENST00000453631.1,ENST00000372652.1,ENST00000372653.1,ENST00000447388.3,ENST00000372651.1,ENST00000525290.1	chr1	41213205:41213277:41215244:41215358:41223792:41223966,41213209:41213277:41215244:41215358:41218822:41218888,	41215245	41215358	41215314	41215314	Nonsense_Mutation	C	T	p.R83*
BLCA	TCGA-DK-A6AW-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38266203:38266472:38320073:38320592:38357092:38357470,	38320074	38320592	38320181	38320181	Nonsense_Mutation	C	A	p.E264*
BLCA	TCGA-DK-A6AW-01	MAP4	ENST00000426837.2	chr3	47918906:47919013:47950527:47953911:47956306:47956429,	47950528	47953911	47950747	47950747	Nonsense_Mutation	G	A	p.R1739*
BLCA	TCGA-DK-A6AW-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46121398:46122553:46135263:46135411:46143741:46143982,	46135264	46135411	46135371	46135371	Nonsense_Mutation	C	A	p.E130*
BLCA	TCGA-DK-A6AW-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186544572	186544572	Nonsense_Mutation	G	A	p.R667*
BLCA	TCGA-DK-A6AW-01	PHF20	ENST00000374000.4,ENST00000339089.6,ENST00000486408.1,ENST00000374012.3	chr20	34435271:34435356:34450934:34451322:34457359:34457473,34446223:34446303:34450934:34451322:34457359:34457473,	34450935	34451322	34451265	34451265	Nonsense_Mutation	G	T	p.E251*
BLCA	TCGA-DK-A6AW-01	EXOC5	ENST00000555148.1,ENST00000413566.2,ENST00000554598.1	chr14	57706312:57706377:57710882:57711077:57713428:57713545,	57710883	57711077	57711056	57711056	Nonsense_Mutation	C	A	p.E98*
BLCA	TCGA-DK-A6AW-01	TTLL5	ENST00000555422.1,ENST00000554510.1,ENST00000298832.9,ENST00000557636.1,ENST00000556893.1	chr14	76230957:76231115:76232404:76232711:76238076:76238197,	76232405	76232711	76232590	76232590	Nonsense_Mutation	G	T	p.E632*
BLCA	TCGA-DK-A6AW-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125642	12125642	Nonsense_Mutation	C	T	p.R1872*
BLCA	TCGA-DK-A6AW-01	RNF38	ENST00000484621.1	chr9	36369719:36369929:36375930:36376124:36390463:36390613,36369719:36369929:36375930:36376124:36400550:36400869,36369719:36369929:36375930:36376124:36400932:36401195,	36375931	36376124	36375992	36375992	Nonsense_Mutation	G	A	p.R16*
BLCA	TCGA-DK-A6AW-01	ZNF675	ENST00000359788.4,ENST00000601010.1,ENST00000599168.1,ENST00000597074.1,ENST00000596211.1,ENST00000600313.1	chr19	23844915:23845011:23845833:23845960:23869832:23869942,	23845834	23845960	23845930	23845930	Nonsense_Mutation	C	A	p.E12*
BLCA	TCGA-DK-A6AW-01	EIF4A3	ENST00000576573.1,ENST00000269349.3	chr17	78109802:78109930:78110026:78110134:78111184:78111300,	78110027	78110134	78110043	78110043	Nonsense_Mutation	C	A	p.E359*
BLCA	TCGA-DK-A6AW-01	ENPEP	ENST00000265162.5	chr4	111441370:111441522:111452353:111452433:111463906:111464043,	111452354	111452433	111452430	111452430	Nonsense_Mutation	G	T	p.E602*
BLCA	TCGA-DK-A6AW-01	KIAA1257	ENST00000511438.1,ENST00000515659.1,ENST00000510149.1,ENST00000265068.5	chr3	128695855:128695909:128696887:128697028:128706458:128706672,	128696888	128697028	128696921	128696921	Nonsense_Mutation	C	A	p.E259*
BLCA	TCGA-DK-A6AW-01	RTKN	ENST00000272430.5,ENST00000305557.5,ENST00000233330.6	chr2	74654295:74654400:74654550:74654719:74655394:74655435,	74654551	74654719	74654713	74654713	Nonsense_Mutation	G	A	p.R352*
BLCA	TCGA-DK-A6AW-01	C8orf34	ENST00000521406.1,ENST00000325233.3,ENST00000539993.1,ENST00000518698.1,ENST00000337103.4	chr8	69633595:69633672:69688633:69688684:69699677:69699771,	69688634	69688684	69688649	69688649	Nonsense_Mutation	G	T	p.G363*
BLCA	TCGA-DK-A6AW-01	TFG	ENST00000490574.1	chr3	100428449:100428565:100432486:100432713:100438818:100438902,100428221:100428275:100432486:100432713:100438818:100438902,	100432487	100432713	100432575	100432575	Nonsense_Mutation	C	T	p.Q16*
BLCA	TCGA-DK-A6AW-01	RYK	ENST00000480381.1,ENST00000460933.1	chr3	133907680:133907767:133910692:133910818:133913925:133914026,	133910693	133910818	133910696	133910696	Nonsense_Mutation	C	A	p.E149*
BLCA	TCGA-DK-A6AW-01	RYK	ENST00000296084.4,ENST00000427044.2	chr3	133907680:133907767:133910692:133910827:133913925:133914026,	133910693	133910827	133910696	133910696	Nonsense_Mutation	C	A	p.E149*
BLCA	TCGA-DK-A6AW-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897243	36897243	Nonsense_Mutation	C	A	p.E730*
BLCA	TCGA-DK-A6AW-01	PDE8A	ENST00000310298.4,ENST00000394553.1,ENST00000557957.1	chr15	85626786:85626875:85634274:85634412:85641178:85641267,85632568:85632647:85634274:85634412:85641178:85641267,	85634275	85634412	85634393	85634393	Nonsense_Mutation	C	A	p.S278*
BLCA	TCGA-DK-A6AW-01	CXADR	ENST00000400166.1	chr21	18924066:18924271:18931293:18931449:18937745:18937805,	18931294	18931449	18931335	18931335	Nonsense_Mutation	G	T	p.E153*
BLCA	TCGA-DK-A6AW-01	VPS41	ENST00000413141.1,ENST00000418457.2,ENST00000414632.1,ENST00000310301.4,ENST00000265745.9	chr7	38857416:38857482:38860802:38860865:38869853:38869928,	38860803	38860865	38860835	38860835	Nonsense_Mutation	C	A	p.E118*
BLCA	TCGA-DK-A6AW-01	KLRG1	ENST00000539240.1,ENST00000266551.4,ENST00000356986.3,ENST00000543895.1	chr12	9144801:9144906:9147714:9147884:9161570:9161671,	9147715	9147884	9147879	9147879	Nonsense_Mutation	G	T	p.E118*
BLCA	TCGA-DK-A6AW-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541484	29541484	Nonsense_Mutation	G	T	p.E470*
BLCA	TCGA-DK-A6AW-01	TGFBR1	ENST00000374994.4,ENST00000549766.1,ENST00000550253.1,ENST00000552516.1	chr9	101894790:101895021:101900140:101900371:101904817:101904985,	101900141	101900371	101900191	101900191	Nonsense_Mutation	G	T	p.E209*
BLCA	TCGA-DK-A6AW-01	JKAMP	ENST00000555491.1	chr14	59961735:59961805:59965444:59965626:59967908:59967965,	59965445	59965626	59965548	59965548	Nonsense_Mutation	C	T	p.R202*
BLCA	TCGA-DK-A6AW-01	TRIM23	ENST00000274327.7,ENST00000231524.9,ENST00000381018.3	chr5	64887698:64887775:64890347:64890472:64892247:64892358,	64890348	64890472	64890416	64890416	Nonsense_Mutation	C	A	p.E493*
BLCA	TCGA-DK-A6AW-01	RAB6A	ENST00000336083.3,ENST00000310653.6,ENST00000536566.1,ENST00000541973.1	chr11	73388988:73389007:73390698:73390765:73418464:73418558,	73390699	73390765	73390759	73390759	Nonsense_Mutation	G	A	p.R168*
BLCA	TCGA-DK-A6AW-01	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1	chr5	33463857:33463930:33466975:33467090:33467664:33467943,	33466976	33467090	33467054	33467054	Nonsense_Mutation	C	T	p.R663*
BLCA	TCGA-DK-A6AW-01	C12orf4	ENST00000545746.1,ENST00000261250.3	chr12	4614471:4614546:4626226:4626355:4627223:4627421,	4626227	4626355	4626293	4626293	Nonsense_Mutation	C	A	p.E366*
BLCA	TCGA-DK-A6AW-01	RAD21	ENST00000523547.1,ENST00000519837.1,ENST00000522699.1,ENST00000297338.2,ENST00000517485.1,ENST00000520992.1	chr8	117874092:117874179:117875368:117875498:117878824:117879000,	117875369	117875498	117875450	117875450	Nonsense_Mutation	G	A	p.R65*
BLCA	TCGA-DK-A6AW-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962834:72962954:72965029:72965209:72965291:72965387,	72965030	72965209	72965054	72965054	Nonsense_Mutation	C	T	p.R972*
BLCA	TCGA-DK-A6AW-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56574760:56574885:56575265:56575381:56575487:56575619,	56575266	56575381	56575360	56575360	Nonsense_Mutation	G	A	p.R288*
BLCA	TCGA-DK-A6AW-01	MPZL1	ENST00000465787.1,ENST00000367853.3,ENST00000359523.2,ENST00000474859.1,ENST00000474729.1	chr1	167734825:167734986:167741511:167741725:167742472:167742605,	167741512	167741725	167741609	167741609	Nonsense_Mutation	C	A	p.S119*
BLCA	TCGA-DK-A6AW-01	SARS	ENST00000234677.2	chr1	109778598:109778728:109779012:109779170:109779865:109779995,	109779013	109779170	109779132	109779132	Nonsense_Mutation	C	T	p.R407*
BLCA	TCGA-DK-A6AW-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102694	168102694	Nonsense_Mutation	G	T	p.E1598*
BLCA	TCGA-DK-A6AW-01	EML4	ENST00000401738.3,ENST00000318522.5	chr2	42483640:42483770:42488260:42488434:42490317:42490446,	42488261	42488434	42488301	42488301	Nonsense_Mutation	G	T	p.E127*
BLCA	TCGA-DK-A6AW-01	KCNMA1	ENST00000406533.3,ENST00000372408.2,ENST00000372421.5,ENST00000354353.5,ENST00000372443.1,ENST00000286627.5,ENST00000286628.8,ENST00000372440.1,ENST00000457953.1,ENST00000372437.1,ENST00000372403.4,ENST00000434208.1,ENST00000404771.3,ENST00000604624.1,ENST00000404857.1	chr10	78850157:78850268:78868238:78868330:78869930:78870096,	78868239	78868330	78868297	78868297	Nonsense_Mutation	C	A	p.E389*
BLCA	TCGA-DK-A6AW-01	GABRA3	ENST00000535043.1,ENST00000370314.4	chrX	151358201:151358413:151366104:151366257:151376472:151376616,	151366105	151366257	151366205	151366205	Nonsense_Mutation	G	T	p.Y277*
BLCA	TCGA-DK-A6AW-01	GABPA	ENST00000400075.3,ENST00000354828.3	chr21	27113907:27113986:27117520:27117665:27121346:27121431,	27117521	27117665	27117528	27117528	Nonsense_Mutation	G	T	p.E29*
BLCA	TCGA-DK-A6AW-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78647960:78648077:78649262:78649459:78655882:78656191,	78649263	78649459	78649352	78649352	Nonsense_Mutation	C	A	p.E1579*
BLCA	TCGA-DK-A6AW-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93603571:93603740:93605179:93605347:93611776:93611966,	93605180	93605347	93605335	93605335	Nonsense_Mutation	C	A	p.E390*
BLCA	TCGA-DK-A6AW-01	MCCC2	ENST00000512218.2,ENST00000323375.8	chr5	70898335:70898460:70900182:70900295:70927947:70928012,	70900183	70900295	70900209	70900209	Nonsense_Mutation	C	T	p.R180*
BLCA	TCGA-DK-A6AW-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000539828.2,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68191861:68191971:68200745:68200918:68208276:68208417,	68200746	68200918	68200795	68200795	Nonsense_Mutation	C	T	p.R551*
BLCA	TCGA-DK-A6AW-01	N4BP2L2	ENST00000505213.1,ENST00000267068.3	chr13	33101600:33101669:33109905:33111164:33112754:33112821,	33109906	33111164	33110633	33110633	Nonsense_Mutation	C	A	p.E178*
BLCA	TCGA-DK-A6AW-01	FAM49A	ENST00000406434.1,ENST00000355549.2,ENST00000381323.3	chr2	16742723:16742801:16743272:16743409:16745256:16745362,	16743273	16743409	16743290	16743290	Nonsense_Mutation	G	A	p.R140*
BLCA	TCGA-DK-A6AW-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68855903:68856128:68857301:68857529:68862076:68862207,	68857302	68857529	68857307	68857307	Nonsense_Mutation	G	T	p.E648*
BLCA	TCGA-DK-A6AW-01	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005478	47005478	Nonsense_Mutation	C	A	p.E49*
BLCA	TCGA-DK-A6AW-01	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005478	47005478	Nonsense_Mutation	C	A	p.E49*
BLCA	TCGA-DK-A6AW-01	ZC4H2	ENST00000337990.2,ENST00000374839.3,ENST00000476032.1,ENST00000545618.1,ENST00000488831.1	chrX	64137737:64137776:64138921:64139084:64139960:64140007,	64138922	64139084	64139062	64139062	Nonsense_Mutation	C	A	p.E136*
BLCA	TCGA-DK-A6AW-01	GIN1	ENST00000512248.1,ENST00000399004.2	chr5	102432244:102432530:102433017:102433194:102433293:102433397,	102433018	102433194	102433155	102433155	Nonsense_Mutation	G	A	p.R291*
BLCA	TCGA-DK-A6AW-01	CAPN13	ENST00000534090.2,ENST00000490786.1,ENST00000450650.1,ENST00000295055.8	chr2	30953595:30953652:30954209:30954265:30955303:30955350,	30954210	30954265	30954218	30954218	Nonsense_Mutation	C	A	p.E659*
BLCA	TCGA-DK-A6AW-01	SLX4IP	ENST00000334534.5	chr20	10536878:10536968:10541347:10541468:10579322:10579400,	10541348	10541468	10541382	10541382	Nonsense_Mutation	C	A	p.S51*
BLCA	TCGA-DK-A6AW-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000359206.3	chr7	87038551:87038708:87041208:87041349:87042932:87043033,	87041209	87041349	87041264	87041264	Nonsense_Mutation	G	A	p.R957*
BLCA	TCGA-DK-A6AW-01	RPS6KB1	ENST00000393021.3,ENST00000443572.2,ENST00000225577.4,ENST00000406116.3	chr17	58012553:58012661:58013575:58013638:58013824:58013902,	58013576	58013638	58013630	58013630	Nonsense_Mutation	G	T	p.E345*
BLCA	TCGA-DK-A6AW-01	CCDC102B	ENST00000360242.5,ENST00000319445.6,ENST00000584156.1	chr18	66541905:66542022:66564455:66564665:66678170:66678341,	66564456	66564665	66564537	66564537	Nonsense_Mutation	G	T	p.E379*
BLCA	TCGA-DK-A6AW-01	ACSM1	ENST00000219151.4,ENST00000307493.4,ENST00000524149.1,ENST00000520010.1	chr16	20635417:20635537:20636744:20636844:20638510:20638638,	20636745	20636844	20636753	20636753	Nonsense_Mutation	G	A	p.R158*
BLCA	TCGA-DK-A6AW-01	RHCE	ENST00000243186.6,ENST00000340849.4	chr1	25688921:25689044:25696957:25697031:25701839:25701919,25688921:25689044:25696957:25697031:25712201:25712335,	25696958	25697031	25697006	25697006	Nonsense_Mutation	C	A	p.E367*
BLCA	TCGA-DK-A6AW-01	DHX32	ENST00000284688.6,ENST00000368721.1,ENST00000284690.3	chr10	127526774:127526956:127527569:127527757:127529415:127529565,	127527570	127527757	127527689	127527689	Nonsense_Mutation	G	A	p.R588*
BLCA	TCGA-DK-A6AW-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47639552:47639699:47641407:47641557:47643434:47643568,	47641408	47641557	47641447	47641447	Nonsense_Mutation	G	T	p.E278*
BLCA	TCGA-DK-A6AW-01	KMT2B	ENST00000222270.7,ENST00000341701.1	chr19	36208920:36209283:36210370:36210443:36210685:36211842,	36210371	36210443	36210440	36210440	Nonsense_Mutation	C	T	p.R145*
BLCA	TCGA-DK-A6AW-01	PEX13	ENST00000295030.5	chr2	61258553:61259248:61272860:61272986:61275606:61279125,	61272861	61272986	61272941	61272941	Nonsense_Mutation	G	T	p.E290*
BLCA	TCGA-DK-A6AW-01	ARHGAP44	ENST00000340825.3,ENST00000379672.5	chr17	12883424:12883550:12887847:12888225:12893348:12893901,	12887848	12888225	12888105	12888105	Nonsense_Mutation	C	T	p.R733*
BLCA	TCGA-DK-A6AW-01	YLPM1	ENST00000238571.3,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7	chr14	75269258:75269379:75276082:75276500:75276612:75276705,	75276083	75276500	75276132	75276132	Nonsense_Mutation	C	A	p.S1524*
BLCA	TCGA-DK-A6AW-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170079094	170079094	Nonsense_Mutation	G	A	p.W325*
BLCA	TCGA-DK-A6AW-01	GABRG3	ENST00000333743.6,ENST00000554696.1	chr15	27573963:27574035:27725795:27725933:27765117:27765270,	27725796	27725933	27725813	27725813	Nonsense_Mutation	G	T	p.E198*
BLCA	TCGA-DK-A6AW-01	ITGA1	ENST00000504669.1,ENST00000282588.6	chr5	52214561:52214728:52216161:52216298:52218606:52218717,	52216162	52216298	52216260	52216260	Nonsense_Mutation	C	T	p.R752*
BLCA	TCGA-DK-A6AW-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2	chr9	96214665:96214671:96233422:96233669:96238537:96238620,	96233423	96233669	96233609	96233609	Nonsense_Mutation	G	T	p.E221*
BLCA	TCGA-DK-A6AW-01	SSB	ENST00000490914.1,ENST00000260956.4,ENST00000409333.1	chr2	170665369:170665412:170666792:170666933:170667367:170667398,	170666793	170666933	170666805	170666805	Nonsense_Mutation	G	T	p.E228*
BLCA	TCGA-DK-A6B1-01	COPB2	ENST00000507777.1,ENST00000333188.5	chr3	139079922:139080137:139081248:139081359:139085409:139085617,	139081249	139081359	139081296	139081296	Nonsense_Mutation	G	A	p.Q650*
BLCA	TCGA-DK-A6B1-01	OPA1	ENST00000419435.1	chr3	193311140:193311198:193332511:193332830:193333462:193333559,193321288:193321346:193332511:193332830:193333462:193333559,	193332512	193332830	193332657	193332657	Nonsense_Mutation	C	T	p.Q60*
BLCA	TCGA-DK-A6B2-01	PICALM	ENST00000532041.1	chr11	85725912:85726006:85733409:85733512:85737333:85737409,85725912:85726006:85733409:85733512:85742510:85742653,	85733410	85733512	85733472	85733472	Nonsense_Mutation	A	T	p.Y130*
BLCA	TCGA-DK-A6B2-01	ARMC8	ENST00000393058.3,ENST00000461822.1,ENST00000469044.1,ENST00000481646.1,ENST00000491704.1,ENST00000460495.1,ENST00000485396.1,ENST00000466762.1,ENST00000538260.1	chr3	137988881:137988974:137991808:137991958:137993290:137993386,	137991809	137991958	137991854	137991854	Nonsense_Mutation	C	T	p.R509*
BLCA	TCGA-DK-A6B2-01	ABCC5	ENST00000382494.2	chr3	183703091:183703166:183705557:183705705:183706359:183706515,	183705558	183705705	183705701	183705701	Nonsense_Mutation	C	A	p.E150*
BLCA	TCGA-DK-A6B2-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742270	124742270	Nonsense_Mutation	C	T	p.R80*
BLCA	TCGA-DK-A6B2-01	AOX1	ENST00000485965.1,ENST00000374700.2	chr2	201476106:201476216:201477331:201477516:201478526:201478689,	201477332	201477516	201477419	201477419	Nonsense_Mutation	G	T	p.E451*
BLCA	TCGA-DK-A6B5-01	LIPH	ENST00000424591.2	chr3	185251463:185251467:185252552:185252920:185270210:185270298,	185252553	185252920	185252791	185252791	Nonsense_Mutation	G	T	p.S60*
BLCA	TCGA-DK-A6B5-01	BRCA2	ENST00000544455.1,ENST00000380152.3	chr13	32890558:32890664:32893213:32893462:32899212:32899321,	32893214	32893462	32893373	32893373	Nonsense_Mutation	C	G	p.S76*
BLCA	TCGA-DK-A6B6-01	IAH1	ENST00000351760.7	chr2	9613946:9614028:9616115:9616168:9618350:9618499,9614706:9614776:9616115:9616168:9618350:9618395,9614667:9614776:9616115:9616168:9618382:9618395,	9616116	9616168	9616125	9616125	Nonsense_Mutation	C	T	p.Q31*
BLCA	TCGA-DK-A6B6-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BLCA	TCGA-DK-A6B6-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47142964	47142964	Nonsense_Mutation	G	A	p.Q1667*
BLCA	TCGA-DK-A6B6-01	SUZ12	ENST00000322652.5,ENST00000580398.1	chr17	30300164:30300250:30302500:30302732:30303539:30303633,	30302501	30302732	30302570	30302570	Nonsense_Mutation	C	T	p.Q221*
BLCA	TCGA-DK-A6B6-01	HPR	ENST00000561690.1,ENST00000540303.2,ENST00000566168.1	chr16	72097127:72097159:72107790:72107876:72108182:72108284,	72107791	72107876	72107850	72107850	Nonsense_Mutation	C	G	p.S22*
BLCA	TCGA-DK-A6B6-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229527	7229527	Nonsense_Mutation	C	T	p.Q399*
BLCA	TCGA-DK-A6B6-01	PARD3	ENST00000374789.3,ENST00000545693.1,ENST00000545260.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34420390:34420511:34558584:34558827:34606034:34606260,34420390:34420511:34558584:34558827:34573062:34573173,	34558585	34558827	34558670	34558670	Nonsense_Mutation	G	A	p.Q1115*
BLCA	TCGA-DK-A6B6-01	PUM1	ENST00000524516.1,ENST00000257075.5,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3	chr1	31501642:31501711:31532050:31532424:31538462:31538523,	31532051	31532424	31532158	31532158	Nonsense_Mutation	G	A	p.Q86*
BLCA	TCGA-DK-A6B6-01	PUM1	ENST00000526215.1,ENST00000525948.1	chr1	31501642:31501711:31532145:31532424:31538462:31538523,	31532146	31532424	31532158	31532158	Nonsense_Mutation	G	A	p.Q86*
BLCA	TCGA-DK-A6B6-01	RNF14	ENST00000394514.2	chr5	141354368:141354520:141357867:141358395:141359687:141359842,141353147:141353307:141357867:141358395:141359687:141359842,	141357868	141358395	141358012	141358012	Nonsense_Mutation	C	T	p.Q151*
BLCA	TCGA-DK-A6B6-01	CLEC4C	ENST00000542353.1,ENST00000360345.3	chr12	7890024:7890170:7894016:7894127:7898926:7899019,	7894017	7894127	7894074	7894074	Nonsense_Mutation	C	A	p.E60*
BLCA	TCGA-DK-A6B6-01	ENSA	ENST00000356527.5,ENST00000369009.3	chr1	150598187:150598284:150599873:150600068:150601889:150601978,	150599874	150600068	150599891	150599891	Nonsense_Mutation	G	A	p.R79*
BLCA	TCGA-DK-A6B6-01	ENSA	ENST00000503345.1	chr1	150598187:150598284:150599787:150600068:150601889:150601978,	150599788	150600068	150599891	150599891	Nonsense_Mutation	G	A	p.R79*
BLCA	TCGA-DK-A6B6-01	SLC16A6	ENST00000580666.1	chr17	66270188:66270211:66274229:66274468:66287226:66287257,	66274230	66274468	66274388	66274388	Nonsense_Mutation	C	T	p.W25*
BLCA	TCGA-DK-A6B6-01	HSP90AB1	ENST00000353801.3	chr6	44214823:44214932:44216353:44216513:44217113:44217320,	44216354	44216513	44216418	44216418	Nonsense_Mutation	C	T	p.Q18*
BLCA	TCGA-DK-A6B6-01	RARG	ENST00000425354.2,ENST00000548317.1,ENST00000338561.5,ENST00000327550.3,ENST00000543726.1,ENST00000550265.1,ENST00000394426.1,ENST00000543762.1	chr12	53607877:53608019:53608229:53608390:53609076:53609136,	53608230	53608390	53608274	53608274	Nonsense_Mutation	G	A	p.Q198*
BLCA	TCGA-DK-A6B6-01	GAPVD1	ENST00000312123.9,ENST00000297933.6,ENST00000394105.2	chr9	128104497:128104578:128109097:128109220:128111668:128111798,	128109098	128109220	128109130	128109130	Nonsense_Mutation	C	T	p.Q1000*
BLCA	TCGA-DK-A6B6-01	GAPVD1	ENST00000265956.4,ENST00000495955.1,ENST00000394104.2	chr9	128104497:128104578:128109097:128109274:128111668:128111798,	128109098	128109274	128109130	128109130	Nonsense_Mutation	C	T	p.Q1000*
BLCA	TCGA-DK-A6B6-01	PPP2R5B	ENST00000528530.1,ENST00000164133.2	chr11	64695273:64695375:64695537:64695630:64695766:64695897,	64695538	64695630	64695613	64695613	Nonsense_Mutation	C	T	p.Q192*
BLCA	TCGA-DK-A6B6-01	THEMIS2	ENST00000328928.7	chr1	28206459:28206565:28208481:28208636:28209023:28209115,	28208482	28208636	28208599	28208599	Nonsense_Mutation	G	A	p.W255*
BLCA	TCGA-DK-A6B6-01	THEMIS2	ENST00000373921.3	chr1	28206459:28206565:28208481:28209554:28211805:28211928,	28208482	28209554	28208599	28208599	Nonsense_Mutation	G	A	p.W255*
BLCA	TCGA-DK-A6B6-01	SLC3A2	ENST00000377892.1,ENST00000536981.1,ENST00000377891.2,ENST00000377890.2,ENST00000377889.2,ENST00000457660.2,ENST00000535296.1,ENST00000538682.1,ENST00000539891.1,ENST00000338663.7,ENST00000542922.1,ENST00000541425.1	chr11	62652103:62652162:62652648:62652829:62652936:62653059,	62652649	62652829	62652683	62652683	Nonsense_Mutation	C	T	p.Q417*
BLCA	TCGA-DK-A6B6-01	SLC3A2	ENST00000535768.1	chr11	62652103:62652162:62652648:62653080:62655606:62655641,	62652649	62653080	62652683	62652683	Nonsense_Mutation	C	T	p.Q417*
BLCA	TCGA-DK-A6B6-01	COMT	ENST00000412786.1,ENST00000406520.3,ENST00000403184.1,ENST00000407537.1,ENST00000361682.6,ENST00000403710.1,ENST00000449653.1	chr22	19950069:19950338:19951088:19951282:19951632:19951822,19950069:19950338:19951088:19951282:19951690:19951822,	19951089	19951282	19951112	19951112	Nonsense_Mutation	C	T	p.Q105*
BLCA	TCGA-DK-A6B6-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166818540	166818540	Nonsense_Mutation	C	T	p.Q242*
BLCA	TCGA-DK-A6B6-01	POLDIP3	ENST00000445215.1	chr22	42987960:42988090:42991542:42991609:42992191:42992371,	42991543	42991609	42991566	42991566	Nonsense_Mutation	G	A	p.R290*
BLCA	TCGA-DK-A6B6-01	POLDIP3	ENST00000348657.2,ENST00000451060.2,ENST00000252115.5,ENST00000491021.1	chr22	42987960:42988090:42991542:42991620:42992191:42992371,	42991543	42991620	42991566	42991566	Nonsense_Mutation	G	A	p.R290*
BLCA	TCGA-DK-A6B6-01	C7orf26	ENST00000472693.1,ENST00000344417.5	chr7	6634065:6634231:6639459:6639987:6641731:6641771,	6639460	6639987	6639964	6639964	Nonsense_Mutation	C	G	p.S362*
BLCA	TCGA-DK-A6B6-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112904	57112904	Nonsense_Mutation	G	A	p.Q804*
BLCA	TCGA-DK-A6B6-01	BTF3	ENST00000335895.8,ENST00000514505.2,ENST00000380591.3,ENST00000508901.1	chr5	72798415:72798426:72798740:72798942:72800171:72800228,	72798741	72798942	72798795	72798795	Nonsense_Mutation	C	T	p.Q124*
BLCA	TCGA-DK-A6B6-01	FUS	ENST00000487509.2,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31195181:31195323:31195529:31195717:31196259:31196500,	31195530	31195717	31195546	31195546	Nonsense_Mutation	C	T	p.Q118*
BLCA	TCGA-DK-A6B6-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62930930:62931043:62931381:62931486:62931875:62931956,	62931382	62931486	62931484	62931484	Nonsense_Mutation	C	T	p.Q706*
BLCA	TCGA-DK-A6B6-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684101	77684101	Nonsense_Mutation	C	T	p.Q1281*
BLCA	TCGA-DK-A6B6-01	ELP2	ENST00000423854.2,ENST00000350494.6,ENST00000542824.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33740894:33740967:33744437:33744630:33747063:33747185,	33744438	33744630	33744582	33744582	Nonsense_Mutation	C	T	p.R636*
BLCA	TCGA-DK-AA6L-01	FAR1	ENST00000524933.1,ENST00000354817.3,ENST00000532701.1	chr11	13721863:13722039:13729446:13729626:13732239:13732417,	13729447	13729626	13729536	13729536	Nonsense_Mutation	C	G	p.S152*
BLCA	TCGA-DK-AA6L-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68457068:68457142:68466069:68466230:68467974:68468105,	68466070	68466230	68466151	68466151	Nonsense_Mutation	C	T	p.Q366*
BLCA	TCGA-DK-AA6L-01	LRRC23	ENST00000451681.1,ENST00000428946.1,ENST00000486401.1	chr12	6992867:6993083:7014748:7014923:7015572:7015619,7014037:7014067:7014748:7014923:7015572:7015619,	7014749	7014923	7014918	7014918	Nonsense_Mutation	G	T	p.E41*
BLCA	TCGA-DK-AA6L-01	PPP1R8	ENST00000431586.1,ENST00000311772.5,ENST00000373931.4	chr1	28165287:28165363:28167524:28167745:28169696:28169841,	28167525	28167745	28167600	28167600	Nonsense_Mutation	C	G	p.S116*
BLCA	TCGA-DK-AA6L-01	SOBP	ENST00000317357.5,ENST00000477448.1	chr6	107824860:107824999:107827445:107827631:107854662:107854814,	107827446	107827631	107827518	107827518	Nonsense_Mutation	C	G	p.S103*
BLCA	TCGA-DK-AA6L-01	SPAG9	ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000513746.2,ENST00000510283.1	chr17	49064472:49064598:49067037:49067233:49067810:49067946,	49067038	49067233	49067228	49067228	Nonsense_Mutation	C	A	p.E875*
BLCA	TCGA-DK-AA6L-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000489740.1,ENST00000415140.2,ENST00000404816.2,ENST00000422669.1,ENST00000272273.5,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33526698:33526711:33534500:33534623:33540210:33540336,	33534501	33534623	33534596	33534596	Nonsense_Mutation	C	T	p.Q1193*
BLCA	TCGA-DK-AA6L-01	ESYT1	ENST00000394048.5,ENST00000541590.1,ENST00000267113.4,ENST00000551112.1	chr12	56532551:56532623:56532710:56532797:56536068:56536205,	56532711	56532797	56532789	56532789	Nonsense_Mutation	G	T	p.E862*
BLCA	TCGA-DK-AA6L-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17765156	17765156	Nonsense_Mutation	C	A	p.E1487*
BLCA	TCGA-DK-AA6M-01	SP110	ENST00000258381.6	chr2	231033843:231033953:231035336:231035477:231036781:231036863,231033843:231033953:231035336:231035477:231036411:231036483,	231035337	231035477	231035453	231035453	Nonsense_Mutation	G	A	p.Q638*
BLCA	TCGA-DK-AA6M-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645084	67645084	Nonsense_Mutation	C	T	p.Q117*
BLCA	TCGA-DK-AA6P-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29677200:29677336:29679274:29679432:29683477:29683529,	29679275	29679432	29679318	29679318	Nonsense_Mutation	G	T	p.E2501*
BLCA	TCGA-DK-AA6P-01	NOTCH3	ENST00000263388.2	chr19	15276597:15276902:15278059:15278222:15280896:15280961,	15278060	15278222	15278173	15278173	Nonsense_Mutation	C	T	p.W1750*
BLCA	TCGA-DK-AA6P-01	PPP4R1	ENST00000581250.1,ENST00000400556.3	chr18	9593765:9593872:9595015:9595151:9614223:9614268,	9595016	9595151	9595085	9595085	Nonsense_Mutation	G	C	p.S40*
BLCA	TCGA-DK-AA6P-01	PPP4R1	ENST00000581835.1,ENST00000400555.3,ENST00000580745.1,ENST00000584074.1,ENST00000582240.1	chr18	9593765:9593872:9595015:9595100:9614223:9614268,	9595016	9595100	9595085	9595085	Nonsense_Mutation	G	C	p.S40*
BLCA	TCGA-DK-AA6P-01	OCIAD2	ENST00000512087.1	chr4	48887421:48887582:48896022:48896070:48906500:48906615,48887421:48887582:48896022:48896070:48899820:48899852,48894874:48894906:48896022:48896070:48899820:48899852,48894849:48894906:48896022:48896070:48899170:48899220,	48896023	48896070	48896040	48896040	Nonsense_Mutation	G	T	p.S83*
BLCA	TCGA-DK-AA6P-01	OCIAD2	ENST00000514576.1	chr4	48887421:48887582:48894788:48896070:48899820:48899852,	48894789	48896070	48896040	48896040	Nonsense_Mutation	G	T	p.S83*
BLCA	TCGA-DK-AA6P-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18849335:18849554:18849678:18849788:18849872:18850011,	18849679	18849788	18849689	18849689	Nonsense_Mutation	G	T	p.S2395*
BLCA	TCGA-DK-AA6Q-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187518321	187518321	Nonsense_Mutation	G	A	p.Q4125*
BLCA	TCGA-DK-AA6Q-01	FAT1	ENST00000507105.1	chr4	187516842:187516980:187518187:187518325:187518835:187518946,	187518188	187518325	187518321	187518321	Nonsense_Mutation	G	A	p.Q4125*
BLCA	TCGA-DK-AA6R-01	ST6GALNAC1	ENST00000156626.7,ENST00000590878.1,ENST00000359088.5	chr17	74623496:74623665:74625093:74625793:74639589:74639742,	74625094	74625793	74625231	74625231	Nonsense_Mutation	G	A	p.Q232*
BLCA	TCGA-DK-AA6R-01	ABCA6	ENST00000284425.2,ENST00000446604.2	chr17	67083493:67083614:67084307:67084399:67085605:67085683,	67084308	67084399	67084354	67084354	Nonsense_Mutation	C	A	p.E1218*
BLCA	TCGA-DK-AA6R-01	TPRKB	ENST00000272424.5,ENST00000318190.7,ENST00000409716.2	chr2	73957016:73957156:73957686:73957863:73959289:73959412,	73957687	73957863	73957857	73957857	Nonsense_Mutation	C	A	p.E130*
BLCA	TCGA-DK-AA6R-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097665	27097665	Nonsense_Mutation	C	G	p.S1085*
BLCA	TCGA-DK-AA6S-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124591	76124591	Nonsense_Mutation	G	C	p.S33*
BLCA	TCGA-DK-AA6S-01	HADHA	ENST00000380649.3,ENST00000492433.1	chr2	26415178:26415293:26416445:26416641:26417438:26417507,	26416446	26416641	26416530	26416530	Nonsense_Mutation	C	A	p.E601*
BLCA	TCGA-DK-AA6S-01	IPPK	ENST00000287996.3	chr9	95397439:95397590:95400282:95400562:95402991:95403064,	95400283	95400562	95400337	95400337	Nonsense_Mutation	G	A	p.Q288*
BLCA	TCGA-DK-AA6S-01	TSPAN3	ENST00000561277.1	chr15	77346519:77346621:77348405:77348597:77363233:77363376,77348130:77348205:77348405:77348597:77363346:77363464,	77348406	77348597	77348525	77348525	Nonsense_Mutation	C	A	p.E46*
BLCA	TCGA-DK-AA6S-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479365	100479365	Nonsense_Mutation	C	T	p.Q113*
BLCA	TCGA-DK-AA6S-01	UBE4A	ENST00000252108.3,ENST00000431736.2	chr11	118244208:118244400:118245610:118245944:118247288:118247409,	118245611	118245944	118245786	118245786	Nonsense_Mutation	C	G	p.S431*
BLCA	TCGA-DK-AA6S-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000601564.1,ENST00000598517.1,ENST00000595958.1,ENST00000593360.1	chr19	17169620:17169686:17170366:17170461:17170806:17170899,	17170367	17170461	17170416	17170416	Nonsense_Mutation	G	T	p.S63*
BLCA	TCGA-DK-AA6S-01	TSEN34	ENST00000456872.1,ENST00000396383.1,ENST00000396388.2,ENST00000302937.4,ENST00000429671.2,ENST00000455798.1	chr19	54695211:54695458:54695571:54695815:54695966:54696206,	54695572	54695815	54695740	54695740	Nonsense_Mutation	G	T	p.E138*
BLCA	TCGA-DK-AA6S-01	HNRNPM	ENST00000594907.1,ENST00000348943.3,ENST00000600092.1,ENST00000601645.1,ENST00000325495.4	chr19	8520288:8520458:8527412:8527465:8528380:8528384,	8527413	8527465	8527461	8527461	Nonsense_Mutation	C	G	p.S111*
BLCA	TCGA-DK-AA6T-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48936995	48936995	Nonsense_Mutation	C	T	p.R255*
BLCA	TCGA-DK-AA6T-01	CCDC125	ENST00000511257.1,ENST00000396499.1,ENST00000396496.2	chr5	68581163:68581294:68588014:68588189:68590619:68590727,	68588015	68588189	68588043	68588043	Nonsense_Mutation	C	T	p.W357*
BLCA	TCGA-DK-AA6T-01	ZFP36L1	ENST00000553375.1	chr14	69257049:69257209:69259598:69259787:69262791:69262931,	69259599	69259787	69259601	69259601	Nonsense_Mutation	T	A	p.K19*
BLCA	TCGA-DK-AA6U-01	HP1BP3	ENST00000375003.2,ENST00000312239.5,ENST00000419948.1	chr1	21074107:21074148:21076215:21076375:21083658:21083749,	21076216	21076375	21076330	21076330	Nonsense_Mutation	C	A	p.E191*
BLCA	TCGA-DK-AA6U-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7166164:7166415:7167978:7168105:7170547:7170762,	7167979	7168105	7168032	7168032	Nonsense_Mutation	G	T	p.Y519*
BLCA	TCGA-DK-AA6U-01	YIPF3	ENST00000490447.2	chr6	43483343:43483439:43483626:43483928:43484464:43484657,	43483627	43483928	43483806	43483806	Nonsense_Mutation	C	A	p.E37*
BLCA	TCGA-DK-AA6U-01	YIPF3	ENST00000510102.1,ENST00000416380.2	chr6	43483343:43483439:43483626:43483925:43484464:43484657,	43483627	43483925	43483806	43483806	Nonsense_Mutation	C	A	p.E37*
BLCA	TCGA-DK-AA6U-01	YIPF3	ENST00000506469.1	chr6	43483343:43483439:43483626:43483851:43484464:43484657,	43483627	43483851	43483806	43483806	Nonsense_Mutation	C	A	p.E37*
BLCA	TCGA-DK-AA6U-01	YIPF3	ENST00000503972.1,ENST00000460903.2	chr6	43483343:43483439:43483626:43483833:43484464:43484657,	43483627	43483833	43483806	43483806	Nonsense_Mutation	C	A	p.E37*
BLCA	TCGA-DK-AA6U-01	MED27	ENST00000357028.2,ENST00000292035.5	chr9	134735493:134736059:134738449:134738527:134759444:134759486,	134738450	134738527	134738491	134738491	Nonsense_Mutation	G	A	p.Q254*
BLCA	TCGA-DK-AA6U-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820720	3820720	Nonsense_Mutation	G	A	p.Q911*
BLCA	TCGA-DK-AA6U-01	MTMR4	ENST00000323456.5	chr17	56581104:56581259:56581410:56581581:56581663:56581849,	56581411	56581581	56581515	56581515	Nonsense_Mutation	G	A	p.R518*
BLCA	TCGA-DK-AA6W-01	ZFAND5	ENST00000376960.4,ENST00000237937.3,ENST00000488164.1,ENST00000376962.5,ENST00000471197.1,ENST00000343431.2	chr9	74970870:74971017:74971846:74971972:74974333:74974437,	74971847	74971972	74971943	74971943	Nonsense_Mutation	G	A	p.Q133*
BLCA	TCGA-DK-AA6W-01	WDHD1	ENST00000420358.2,ENST00000567693.1,ENST00000360586.3,ENST00000421192.1,ENST00000359167.4	chr14	55423751:55423922:55424309:55424353:55429215:55429269,	55424310	55424353	55424327	55424327	Nonsense_Mutation	G	A	p.R910*
BLCA	TCGA-DK-AA6W-01	SYNE1	ENST00000341594.5,ENST00000367255.5,ENST00000265368.4,ENST00000454018.2,ENST00000448038.1,ENST00000423061.1	chr6	152688352:152688517:152690106:152690262:152690605:152690749,	152690107	152690262	152690229	152690229	Nonsense_Mutation	G	A	p.Q3229*
BLCA	TCGA-DK-AA6W-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350177	89350177	Nonsense_Mutation	C	A	p.E925*
BLCA	TCGA-DK-AA6W-01	NFIX	ENST00000585575.1,ENST00000587260.1,ENST00000397661.2,ENST00000585382.1,ENST00000592199.1,ENST00000586797.1,ENST00000588228.1,ENST00000587760.1	chr19	13186348:13186485:13189426:13189549:13192493:13192649,	13189427	13189549	13189483	13189483	Nonsense_Mutation	C	T	p.Q338*
BLCA	TCGA-DK-AA6W-01	MTDH	ENST00000519934.1	chr8	98711981:98712080:98718853:98718978:98725889:98725997,98703358:98703416:98718853:98718978:98725889:98725997,	98718854	98718978	98718938	98718938	Nonsense_Mutation	C	A	p.S411*
BLCA	TCGA-DK-AA6X-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938459	44938459	Nonsense_Mutation	C	T	p.Q1003*
BLCA	TCGA-DK-AA6X-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321170	46321170	Nonsense_Mutation	G	A	p.Q457*
BLCA	TCGA-DK-AA6X-01	PDCL	ENST00000259467.4	chr9	125585294:125585476:125588894:125589071:125590749:125590910,	125588895	125589071	125588973	125588973	Nonsense_Mutation	G	A	p.R32*
BLCA	TCGA-DK-AA71-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000361203.3,ENST00000446842.2,ENST00000370765.6,ENST00000370788.2,ENST00000421834.2,ENST00000439203.1,ENST00000520645.1,ENST00000518935.1,ENST00000370769.4	chr6	56501354:56501450:56504056:56504161:56504247:56504409,	56504057	56504161	56504131	56504131	Nonsense_Mutation	C	A	p.E931*
BLCA	TCGA-DK-AA71-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349019	89349019	Nonsense_Mutation	G	A	p.R1311*
BLCA	TCGA-DK-AA71-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813278	214813278	Nonsense_Mutation	C	T	p.Q533*
BLCA	TCGA-DK-AA71-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21167348:21167521:21175907:21176023:21177750:21177971,	21175908	21176023	21175999	21175999	Nonsense_Mutation	G	C	p.S1216*
BLCA	TCGA-DK-AA71-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645045	67645045	Nonsense_Mutation	G	T	p.E104*
BLCA	TCGA-DK-AA71-01	MTF2	ENST00000471953.1,ENST00000370303.4,ENST00000370298.4	chr1	93544867:93545088:93575786:93575985:93576101:93576183,	93575787	93575985	93575839	93575839	Nonsense_Mutation	C	T	p.R20*
BLCA	TCGA-DK-AA71-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420733	49420733	Nonsense_Mutation	C	A	p.E5006*
BLCA	TCGA-DK-AA71-01	ARSB	ENST00000264914.4	chr5	78077674:78077797:78135178:78135249:78181406:78181650,	78135179	78135249	78135224	78135224	Nonsense_Mutation	C	A	p.E390*
BLCA	TCGA-DK-AA71-01	CLUAP1	ENST00000574369.1,ENST00000341633.5,ENST00000417763.2,ENST00000571025.1	chr16	3551017:3551089:3554719:3554831:3558288:3558464,3551017:3551089:3554719:3554831:3556330:3556415,	3554720	3554831	3554728	3554728	Nonsense_Mutation	G	T	p.E11*
BLCA	TCGA-DK-AA71-01	WWC1	ENST00000521089.1,ENST00000265293.4,ENST00000519859.1,ENST00000523043.1,ENST00000393895.3	chr5	167798428:167798538:167812215:167812419:167824728:167824791,	167812216	167812419	167812239	167812239	Nonsense_Mutation	C	T	p.R85*
BLCA	TCGA-DK-AA71-01	ETV4	ENST00000545954.1	chr17	41622343:41622390:41622641:41622735:41623552:41623683,	41622642	41622735	41622708	41622708	Nonsense_Mutation	C	A	p.E30*
BLCA	TCGA-DK-AA71-01	ETV4	ENST00000585508.1	chr17	41622343:41622390:41622641:41623036:41623552:41623683,	41622642	41623036	41622708	41622708	Nonsense_Mutation	C	A	p.E30*
BLCA	TCGA-DK-AA71-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89346322	89346322	Nonsense_Mutation	C	A	p.E2210*
BLCA	TCGA-DK-AA71-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911640	74911640	Nonsense_Mutation	C	T	p.R183*
BLCA	TCGA-DK-AA71-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097665	27097665	Nonsense_Mutation	C	A	p.S1085*
BLCA	TCGA-DK-AA74-01	EMC4	ENST00000560947.1	chr15	34519929:34520047:34520637:34520790:34521953:34522181,	34520638	34520790	34520651	34520651	Nonsense_Mutation	C	A	p.S126*
BLCA	TCGA-DK-AA74-01	EMC4	ENST00000267750.4,ENST00000558205.1	chr15	34519963:34520047:34520629:34520790:34521953:34522181,	34520630	34520790	34520651	34520651	Nonsense_Mutation	C	A	p.S126*
BLCA	TCGA-DK-AA74-01	ARPP21	ENST00000417925.1,ENST00000337271.5,ENST00000444190.1,ENST00000458225.1,ENST00000187397.4	chr3	35725217:35725307:35729230:35729375:35730798:35730877,	35729231	35729375	35729370	35729370	Nonsense_Mutation	C	G	p.S134*
BLCA	TCGA-DK-AA74-01	ARID1B	ENST00000367148.1,ENST00000275248.4,ENST00000414678.2	chr6	157100566:157100605:157150360:157150555:157222509:157222659,	157150361	157150555	157150436	157150436	Nonsense_Mutation	C	T	p.Q540*
BLCA	TCGA-DK-AA74-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365137	37365137	Nonsense_Mutation	C	G	p.S587*
BLCA	TCGA-DK-AA74-01	DLG1	ENST00000448528.2,ENST00000419553.1,ENST00000419227.1,ENST00000412364.2,ENST00000486877.1,ENST00000419354.1,ENST00000314062.3,ENST00000392382.2,ENST00000450955.1,ENST00000392380.2,ENST00000456699.2,ENST00000392381.3,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4,ENST00000436682.1	chr3	197009549:197009716:197023216:197023348:197024056:197024075,	197023217	197023348	197023309	197023309	Nonsense_Mutation	G	C	p.S20*
BLCA	TCGA-DK-AA74-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578179	7578179	Nonsense_Mutation	C	A	p.E224*
BLCA	TCGA-DK-AA74-01	UBQLN1	ENST00000257468.7	chr9	86281264:86281348:86284099:86284242:86292641:86292876,86279944:86280060:86284099:86284242:86292641:86292876,	86284100	86284242	86284123	86284123	Nonsense_Mutation	G	A	p.Q409*
BLCA	TCGA-DK-AA74-01	UBQLN1	ENST00000533705.1	chr9	86279944:86280060:86281264:86284242:86292641:86292876,	86281265	86284242	86284123	86284123	Nonsense_Mutation	G	A	p.Q409*
BLCA	TCGA-DK-AA74-01	XYLT2	ENST00000017003.2	chr17	48433871:48434134:48435567:48435901:48437329:48438512,48434478:48434613:48435567:48435901:48437329:48438512,	48435568	48435901	48435844	48435844	Nonsense_Mutation	G	T	p.E740*
BLCA	TCGA-DK-AA75-01	MYO5C	ENST00000261839.7	chr15	52503926:52504081:52505384:52505483:52506799:52506887,	52505385	52505483	52505468	52505468	Nonsense_Mutation	G	T	p.S1353*
BLCA	TCGA-DK-AA75-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000434513.1,ENST00000475356.1,ENST00000167825.4,ENST00000452522.1	chr1	17975048:17975170:17981130:17981217:17982373:17982597,	17981131	17981217	17981180	17981180	Nonsense_Mutation	C	G	p.S815*
BLCA	TCGA-DK-AA75-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29185178:29185341:29187450:29187630:29192721:29192818,	29187451	29187630	29187576	29187576	Nonsense_Mutation	G	T	p.E1028*
BLCA	TCGA-DK-AA75-01	SYNE1	ENST00000341594.5,ENST00000367255.5,ENST00000265368.4,ENST00000454018.2,ENST00000448038.1,ENST00000423061.1	chr6	152688352:152688517:152690106:152690262:152690605:152690749,	152690107	152690262	152690229	152690229	Nonsense_Mutation	G	A	p.Q3229*
BLCA	TCGA-DK-AA75-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296316	101296316	Nonsense_Mutation	G	T	p.S170*
BLCA	TCGA-DK-AA75-01	ACOX1	ENST00000301608.4,ENST00000587927.1,ENST00000293217.5,ENST00000572047.1,ENST00000573078.1,ENST00000537812.1	chr17	73942787:73942876:73944331:73944538:73945297:73945440,	73944332	73944538	73944430	73944430	Nonsense_Mutation	G	A	p.Q575*
BLCA	TCGA-DK-AA75-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724252	112724252	Nonsense_Mutation	A	T	p.K46*
BLCA	TCGA-DK-AA75-01	NTM	ENST00000550167.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132016175:132016408:132081915:132082041:132177582:132177656,	132081916	132082041	132081933	132081933	Nonsense_Mutation	G	T	p.E140*
BLCA	TCGA-DK-AA75-01	PLB1	ENST00000404858.1,ENST00000422425.2	chr2	28802493:28802574:28805271:28805372:28808627:28808709,	28805272	28805372	28805334	28805334	Nonsense_Mutation	C	G	p.Y554*
BLCA	TCGA-DK-AA76-01	VPS54	ENST00000354504.3,ENST00000409558.4,ENST00000272322.4	chr2	64148339:64148469:64160806:64161147:64169598:64169695,	64160807	64161147	64160937	64160937	Nonsense_Mutation	G	A	p.Q525*
BLCA	TCGA-DK-AA76-01	MEI1	ENST00000401548.3,ENST00000540833.1,ENST00000300398.4,ENST00000400107.1	chr22	42125668:42125783:42126524:42126641:42128248:42128348,	42126525	42126641	42126602	42126602	Nonsense_Mutation	G	T	p.E353*
BLCA	TCGA-DK-AA76-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10096596:10096748:10097995:10098161:10102471:10102636,	10097996	10098161	10098144	10098144	Nonsense_Mutation	C	T	p.Q861*
BLCA	TCGA-DK-AA76-01	TMEM120B	ENST00000449592.2,ENST00000541467.1,ENST00000342607.6	chr12	122190034:122190129:122199554:122199644:122211326:122211419,122190034:122190129:122199554:122199644:122208812:122208878,	122199555	122199644	122199597	122199597	Nonsense_Mutation	C	A	p.Y168*
BLCA	TCGA-DK-AA77-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069200	29069200	Nonsense_Mutation	C	T	p.Q140*
BLCA	TCGA-DK-AA77-01	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113490556:113490565:113496589:113496693:113505350:113505532,	113496590	113496693	113496667	113496667	Nonsense_Mutation	C	T	p.R595*
BLCA	TCGA-DK-AA77-01	FMR1	ENST00000370470.1	chrX	147022099:147022181:147024650:147024846:147026388:147026571,147022099:147022181:147024650:147024846:147026424:147026571,147022099:147022181:147024650:147024846:147026463:147026571,	147024651	147024846	147024795	147024795	Nonsense_Mutation	A	T	p.R453*
BLCA	TCGA-DK-AA77-01	CFH	ENST00000439155.2,ENST00000367429.4	chr1	196645118:196645195:196646605:196646797:196648752:196648923,	196646606	196646797	196646771	196646771	Nonsense_Mutation	G	A	p.W198*
BLCA	TCGA-E5-A2PC-01	RFWD3	ENST00000571750.1	chr16	74685817:74686020:74694829:74695349:74698521:74698643,	74694830	74695349	74695239	74695239	Nonsense_Mutation	G	A	p.Q37*
BLCA	TCGA-E5-A2PC-01	CD84	ENST00000368054.3,ENST00000534968.1	chr1	160519706:160519769:160520727:160520825:160523167:160523287,	160520728	160520825	160520800	160520800	Nonsense_Mutation	G	T	p.Y262*
BLCA	TCGA-E5-A2PC-01	FGF12	ENST00000264730.3,ENST00000430714.1,ENST00000454309.2,ENST00000450716.1,ENST00000445105.2,ENST00000448795.1	chr3	191861848:191861916:191888246:191888445:192053149:192053253,	191888247	191888445	191888334	191888334	Nonsense_Mutation	C	A	p.G114*
BLCA	TCGA-E5-A4TZ-01	EPS15	ENST00000371733.3,ENST00000396122.4	chr1	51868106:51868197:51869090:51869204:51871576:51871780,	51869091	51869204	51869162	51869162	Nonsense_Mutation	C	A	p.E574*
BLCA	TCGA-E5-A4TZ-01	SETD7	ENST00000506866.2,ENST00000274031.3	chr4	140439038:140439196:140441430:140441548:140444507:140444589,	140441431	140441548	140441498	140441498	Nonsense_Mutation	G	C	p.S232*
BLCA	TCGA-E5-A4TZ-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60088128	60088128	Nonsense_Mutation	G	A	p.Q584*
BLCA	TCGA-E5-A4TZ-01	MAST3	ENST00000262811.6,ENST00000608648.1	chr19	18235074:18235176:18235451:18235584:18239209:18239268,	18235452	18235584	18235467	18235467	Nonsense_Mutation	G	T	p.E292*
BLCA	TCGA-E5-A4TZ-01	TM6SF2	ENST00000389363.4	chr19	19380495:19380578:19380981:19381085:19381153:19381251,	19380982	19381085	19381074	19381074	Nonsense_Mutation	G	T	p.Y103*
BLCA	TCGA-E5-A4TZ-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160605378	160605378	Nonsense_Mutation	C	G	p.S526*
BLCA	TCGA-E5-A4U1-01	KCNN4	ENST00000597184.1,ENST00000598836.1,ENST00000599720.1,ENST00000262888.3	chr19	44271104:44271241:44271691:44271859:44273114:44273129,	44271692	44271859	44271757	44271757	Nonsense_Mutation	C	A	p.E408*
BLCA	TCGA-E5-A4U1-01	SLC6A6	ENST00000360861.3,ENST00000427436.1,ENST00000416216.2	chr3	14457919:14457961:14485131:14485371:14487224:14487324,	14485132	14485371	14485245	14485245	Nonsense_Mutation	G	T	p.E35*
BLCA	TCGA-E5-A4U1-01	SLC6A6	ENST00000458124.1,ENST00000454876.2	chr3	14457919:14457961:14485135:14485371:14487224:14487324,	14485136	14485371	14485245	14485245	Nonsense_Mutation	G	T	p.E35*
BLCA	TCGA-E5-A4U1-01	EMP2	ENST00000536829.1,ENST00000359543.3	chr16	10631784:10631931:10637426:10637517:10641396:10641534,	10637427	10637517	10637430	10637430	Nonsense_Mutation	G	A	p.Q56*
BLCA	TCGA-E5-A4U1-01	CCDC39	ENST00000476379.1,ENST00000273654.4	chr3	180381654:180381774:180397078:180397170:180397395:180397587,	180397079	180397170	180397136	180397136	Nonsense_Mutation	C	T	p.W95*
BLCA	TCGA-E5-A4U1-01	RNF213	ENST00000508628.2,ENST00000582970.1	chr17	78311632:78311797:78313000:78314156:78316931:78317125,	78313001	78314156	78314024	78314024	Nonsense_Mutation	C	T	p.Q1953*
BLCA	TCGA-E5-A4U1-01	DDX43	ENST00000370336.4	chr6	74125219:74125307:74125835:74125974:74126909:74127292,	74125836	74125974	74125923	74125923	Nonsense_Mutation	C	T	p.Q641*
BLCA	TCGA-E5-A4U1-01	LONRF1	ENST00000525024.1,ENST00000524526.2,ENST00000533751.1,ENST00000398246.3,ENST00000526680.1	chr8	12580489:12580763:12583235:12583388:12586409:12586572,	12583236	12583388	12583373	12583373	Nonsense_Mutation	C	A	p.E676*
BLCA	TCGA-E5-A4U1-01	BAG4	ENST00000287322.4	chr8	38050205:38050313:38065029:38065284:38066530:38066785,	38065030	38065284	38065106	38065106	Nonsense_Mutation	C	G	p.S152*
BLCA	TCGA-E5-A4U1-01	CDK16	ENST00000517426.1,ENST00000522234.1,ENST00000518391.1,ENST00000520893.1,ENST00000518022.1,ENST00000428400.1,ENST00000357227.4,ENST00000457458.2,ENST00000276052.6,ENST00000519758.1	chrX	47083036:47083158:47083783:47083917:47084016:47084130,	47083784	47083917	47083822	47083822	Nonsense_Mutation	G	T	p.E87*
BLCA	TCGA-E5-A4U1-01	CDK16	ENST00000523034.1	chrX	47083036:47083158:47083783:47083875:47084016:47084130,	47083784	47083875	47083822	47083822	Nonsense_Mutation	G	T	p.E87*
BLCA	TCGA-E5-A4U1-01	CCNJL	ENST00000541762.1,ENST00000257536.7,ENST00000519673.1	chr5	159682555:159682715:159686475:159686778:159707531:159707745,	159686476	159686778	159686479	159686479	Nonsense_Mutation	G	A	p.Q242*
BLCA	TCGA-E5-A4U1-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775422	23775422	Nonsense_Mutation	C	G	p.S227*
BLCA	TCGA-E5-A4U1-01	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74014994:74015141:74015608:74015734:74017548:74017644,	74015609	74015734	74015620	74015620	Nonsense_Mutation	G	A	p.Q376*
BLCA	TCGA-E5-A4U1-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33447146:33447218:33468728:33468851:33477743:33477911,	33468729	33468851	33468840	33468840	Nonsense_Mutation	C	G	p.S663*
BLCA	TCGA-E5-A4U1-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95183081:95183213:95186024:95186224:95186329:95186488,	95186025	95186224	95186219	95186219	Nonsense_Mutation	G	A	p.Q197*
BLCA	TCGA-E5-A4U1-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764924	138764924	Nonsense_Mutation	G	A	p.Q255*
BLCA	TCGA-E5-A4U1-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764924	138764924	Nonsense_Mutation	G	A	p.Q255*
BLCA	TCGA-E5-A4U1-01	TMCO4	ENST00000496528.1,ENST00000488449.1,ENST00000294543.6,ENST00000375122.2,ENST00000375127.1	chr1	20097838:20097975:20107072:20107259:20113518:20113610,	20107073	20107259	20107215	20107215	Nonsense_Mutation	G	A	p.Q13*
BLCA	TCGA-E5-A4U1-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000487363.1,ENST00000397519.2	chr9	15486824:15486929:15489983:15490122:15506558:15506635,	15489984	15490122	15489994	15489994	Nonsense_Mutation	G	C	p.S93*
BLCA	TCGA-E5-A4U1-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000313382.9,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144857639:144857728:144859758:144859998:144863317:144863414,	144859759	144859998	144859897	144859897	Nonsense_Mutation	G	A	p.Q2199*
BLCA	TCGA-E5-A4U1-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19554199:19554316:19556118:19556220:19556415:19556532,	19556119	19556220	19556150	19556150	Nonsense_Mutation	C	G	p.S839*
BLCA	TCGA-E5-A4U1-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118505897	118505897	Nonsense_Mutation	C	G	p.S1804*
BLCA	TCGA-E5-A4U1-01	SREK1	ENST00000523655.1	chr5	65459619:65459750:65460435:65460725:65465878:65465998,	65460436	65460725	65460643	65460643	Nonsense_Mutation	C	T	p.R307*
BLCA	TCGA-E5-A4U1-01	SREK1	ENST00000380918.3,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3,ENST00000520580.1,ENST00000524111.1	chr5	65459619:65459750:65460610:65460725:65465878:65465998,	65460611	65460725	65460643	65460643	Nonsense_Mutation	C	T	p.R307*
BLCA	TCGA-E5-A4U1-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15*
BLCA	TCGA-E5-A4U1-01	TBC1D1	ENST00000261439.4,ENST00000401554.1,ENST00000406664.1,ENST00000407365.1,ENST00000510573.2,ENST00000508802.1	chr4	38126731:38126752:38134704:38134878:38138755:38138870,	38134705	38134878	38134765	38134765	Nonsense_Mutation	C	T	p.Q1065*
BLCA	TCGA-E7-A3X6-01	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25982350:25982514:25990451:25990595:25991610:25991737,	25990452	25990595	25990544	25990544	Nonsense_Mutation	G	C	p.S228*
BLCA	TCGA-E7-A3X6-01	WAC	ENST00000345541.6	chr10	28900702:28900851:28903495:28905291:28906585:28906713,	28903496	28905291	28903604	28903604	Nonsense_Mutation	C	T	p.Q471*
BLCA	TCGA-E7-A3X6-01	SMG5	ENST00000368267.5,ENST00000361813.5	chr1	156238080:156238206:156242110:156242189:156243151:156243241,	156242111	156242189	156242175	156242175	Nonsense_Mutation	G	A	p.Q217*
BLCA	TCGA-E7-A3Y1-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18849335:18849554:18849678:18849788:18849872:18850011,	18849679	18849788	18849753	18849753	Nonsense_Mutation	G	A	p.R2374*
BLCA	TCGA-E7-A3Y1-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509636	106509636	Nonsense_Mutation	C	T	p.R544*
BLCA	TCGA-E7-A4IJ-01	CSNK1G2	ENST00000590106.1,ENST00000255641.8,ENST00000589385.1	chr19	1978473:1978510:1978600:1978749:1978857:1979092,	1978601	1978749	1978612	1978612	Nonsense_Mutation	C	T	p.Q104*
BLCA	TCGA-E7-A4IJ-01	LOXL2	ENST00000389131.3,ENST00000520925.1	chr8	23179642:23179794:23185894:23186078:23190913:23191008,	23185895	23186078	23185981	23185981	Nonsense_Mutation	C	T	p.W355*
BLCA	TCGA-E7-A4IJ-01	LOXL2	ENST00000520349.1	chr8	23179642:23179794:23185894:23186099:23190913:23191008,	23185895	23186099	23185981	23185981	Nonsense_Mutation	C	T	p.W355*
BLCA	TCGA-E7-A4IJ-01	ZMIZ1	ENST00000334512.5	chr10	81067161:81067328:81070680:81070941:81072398:81072468,	81070681	81070941	81070880	81070880	Nonsense_Mutation	C	G	p.S1012*
BLCA	TCGA-E7-A4IJ-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20348612:20348775:20352412:20352658:20355345:20355448,	20352413	20352658	20352498	20352498	Nonsense_Mutation	G	A	p.R531*
BLCA	TCGA-E7-A4IJ-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470221	56470221	Nonsense_Mutation	C	A	p.E3036*
BLCA	TCGA-E7-A4IJ-01	AGPAT4	ENST00000457520.2,ENST00000366911.5,ENST00000320285.4	chr6	161557286:161557666:161560453:161560652:161567555:161567631,	161560454	161560652	161560579	161560579	Nonsense_Mutation	C	T	p.W306*
BLCA	TCGA-E7-A4IJ-01	VDR	ENST00000549336.1,ENST00000547065.1,ENST00000535672.1,ENST00000550325.1,ENST00000395324.2,ENST00000546653.1,ENST00000229022.3	chr12	48249416:48249584:48250911:48251032:48251286:48251471,	48250912	48251032	48250914	48250914	Nonsense_Mutation	G	C	p.S194*
BLCA	TCGA-E7-A4XJ-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381658	109381658	Nonsense_Mutation	C	T	p.R1555*
BLCA	TCGA-E7-A541-01	LDB3	ENST00000372056.4,ENST00000429277.2	chr10	88439838:88439914:88441192:88441560:88451652:88451822,88439838:88439914:88441192:88441560:88445434:88445457,88439838:88439914:88441192:88441560:88446825:88447029,	88441193	88441560	88441526	88441526	Nonsense_Mutation	C	T	p.R219*
BLCA	TCGA-E7-A541-01	PLAA	ENST00000397292.3,ENST00000517642.1,ENST00000520884.1	chr9	26919307:26919527:26920224:26920382:26923175:26923231,	26920225	26920382	26920233	26920233	Nonsense_Mutation	C	A	p.E397*
BLCA	TCGA-E7-A541-01	GAB3	ENST00000369568.4,ENST00000424127.2,ENST00000369575.3	chrX	153928278:153928334:153940503:153940976:153941481:153941701,	153940504	153940976	153940813	153940813	Nonsense_Mutation	G	A	p.Q253*
BLCA	TCGA-E7-A541-01	TRIP12	ENST00000487178.1,ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230668286:230668405:230668714:230668943:230670445:230670518,	230668715	230668943	230668934	230668934	Nonsense_Mutation	G	C	p.S812*
BLCA	TCGA-E7-A541-01	ICA1	ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8183504:8183602:8196745:8196844:8198156:8198282,	8196746	8196844	8196772	8196772	Nonsense_Mutation	G	A	p.Q260*
BLCA	TCGA-E7-A541-01	CHD4	ENST00000309577.6,ENST00000544484.1,ENST00000357008.2,ENST00000544040.1	chr12	6680034:6680198:6682239:6682435:6686950:6687013,	6682240	6682435	6682374	6682374	Nonsense_Mutation	G	C	p.S1836*
BLCA	TCGA-E7-A541-01	HM13	ENST00000376127.3,ENST00000469126.1,ENST00000335574.5,ENST00000340852.5,ENST00000344042.5,ENST00000398174.3	chr20	30115286:30115385:30132749:30132838:30137866:30137924,30125981:30126162:30132749:30132838:30136831:30136917,30125997:30126064:30132749:30132838:30136831:30136917,	30132750	30132838	30132835	30132835	Nonsense_Mutation	G	T	p.E151*
BLCA	TCGA-E7-A541-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113169862	113169862	Nonsense_Mutation	G	C	p.S2673*
BLCA	TCGA-E7-A541-01	THSD4	ENST00000357769.4,ENST00000567745.1	chr15	71839574:71839820:71952868:71953073:72020887:72021063,	71952869	71953073	71953019	71953019	Nonsense_Mutation	G	T	p.E435*
BLCA	TCGA-E7-A541-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204055014:204055112:204058517:204058634:204062024:204062114,	204058518	204058634	204058599	204058599	Nonsense_Mutation	C	T	p.Q2306*
BLCA	TCGA-E7-A541-01	SFI1	ENST00000486708.1,ENST00000400288.2,ENST00000432498.1,ENST00000524296.1,ENST00000382162.3	chr22	31927043:31927115:31942846:31942957:31946239:31946334,	31942847	31942957	31942924	31942924	Nonsense_Mutation	G	A	p.W139*
BLCA	TCGA-E7-A5KE-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697755	17697755	Nonsense_Mutation	C	G	p.S498*
BLCA	TCGA-E7-A5KF-01	INPP4B	ENST00000308502.4,ENST00000506297.1,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000514525.1,ENST00000508116.1,ENST00000511838.1,ENST00000510812.1,ENST00000262992.4	chr4	143159016:143159164:143181644:143181717:143191815:143191927,	143181645	143181717	143181647	143181647	Nonsense_Mutation	G	C	p.S229*
BLCA	TCGA-E7-A5KF-01	CYP2C8	ENST00000490994.2	chr10	96826964:96827114:96827285:96827448:96828991:96829160,96826964:96827114:96827285:96827448:96828953:96829184,	96827286	96827448	96827444	96827444	Nonsense_Mutation	G	C	p.S58*
BLCA	TCGA-E7-A5KF-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123164810:123164975:123171376:123171473:123176418:123176495,	123171377	123171473	123171455	123171455	Nonsense_Mutation	C	T	p.Q123*
BLCA	TCGA-E7-A677-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1,ENST00000421462.1,ENST00000426248.3	chr2	159497138:159497271:159498997:159499211:159514642:159514826,	159498998	159499211	159499163	159499163	Nonsense_Mutation	C	T	p.R621*
BLCA	TCGA-E7-A677-01	FAM124A	ENST00000322475.8	chr13	51805483:51805515:51825603:51826337:51854585:51855616,	51825604	51826337	51826227	51826227	Nonsense_Mutation	C	T	p.R242*
BLCA	TCGA-E7-A677-01	CYP4F12	ENST00000550308.1,ENST00000550627.1,ENST00000546608.1,ENST00000518629.3,ENST00000324632.10,ENST00000517734.1	chr19	15795877:15796007:15806745:15806879:15806970:15807035,	15806746	15806879	15806828	15806828	Nonsense_Mutation	C	T	p.R400*
BLCA	TCGA-E7-A678-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8969358:8969427:8971675:8971824:8973548:8973616,	8971676	8971824	8971700	8971700	Nonsense_Mutation	G	A	p.Q14298*
BLCA	TCGA-E7-A6MD-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55573310:55573469:55576653:55576735:55582714:55582887,	55576654	55576735	55576698	55576698	Nonsense_Mutation	C	A	p.E280*
BLCA	TCGA-E7-A6MD-01	USP4	ENST00000485450.1,ENST00000431357.1,ENST00000265560.4,ENST00000351842.4,ENST00000475873.2	chr3	49322281:49322352:49323530:49323758:49329942:49330031,	49323531	49323758	49323707	49323707	Nonsense_Mutation	G	C	p.S628*
BLCA	TCGA-E7-A6MD-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451157	155451157	Nonsense_Mutation	G	A	p.Q502*
BLCA	TCGA-E7-A6MD-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169806067:169806253:169811557:169811680:169812814:169812910,	169811558	169811680	169811667	169811667	Nonsense_Mutation	T	A	p.L612*
BLCA	TCGA-E7-A6MD-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88456468:88456555:88457757:88457892:88462298:88462422,	88457758	88457892	88457844	88457844	Nonsense_Mutation	G	A	p.Q2062*
BLCA	TCGA-E7-A6MD-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000350210.2	chr1	155218195:155218264:155220066:155220612:155220885:155220955,	155220067	155220612	155220582	155220582	Nonsense_Mutation	G	T	p.S332*
BLCA	TCGA-E7-A6MD-01	FAM189B	ENST00000368366.1	chr1	155218195:155218264:155220066:155220720:155220885:155220955,	155220067	155220720	155220582	155220582	Nonsense_Mutation	G	T	p.S332*
BLCA	TCGA-E7-A6MD-01	ZNF577	ENST00000420592.1,ENST00000451628.2,ENST00000458390.1,ENST00000412216.1,ENST00000301399.5	chr19	52380534:52380630:52381641:52381768:52383575:52383642,	52381642	52381768	52381647	52381647	Nonsense_Mutation	G	C	p.S61*
BLCA	TCGA-E7-A6MD-01	MORF4L1	ENST00000558539.1	chr15	79172853:79172921:79178482:79178737:79179610:79179639,	79178483	79178737	79178556	79178556	Nonsense_Mutation	C	T	p.Q116*
BLCA	TCGA-E7-A6MD-01	MORF4L1	ENST00000559619.1,ENST00000558522.1,ENST00000379535.4,ENST00000558830.1,ENST00000426013.2,ENST00000560422.1,ENST00000561171.1,ENST00000559930.1,ENST00000559158.1,ENST00000559345.1,ENST00000559690.1,ENST00000559258.1,ENST00000559244.1	chr15	79172853:79172921:79178482:79178569:79183330:79183356,79172853:79172921:79178482:79178569:79179610:79179639,	79178483	79178569	79178556	79178556	Nonsense_Mutation	C	T	p.Q116*
BLCA	TCGA-E7-A6ME-01	CACNA1C	ENST00000399638.1,ENST00000480911.1,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2602367:2602552:2614007:2614111:2621977:2622150,	2614008	2614111	2614033	2614033	Nonsense_Mutation	G	A	p.W380*
BLCA	TCGA-E7-A6MF-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000505312.1	chr5	118560403:118560464:118569034:118569162:118573016:118573109,	118569035	118569162	118569088	118569088	Nonsense_Mutation	C	T	p.Q2777*
BLCA	TCGA-E7-A6MF-01	PIH1D1	ENST00000599366.1	chr19	49951257:49951319:49952596:49952911:49954038:49954093,	49952597	49952911	49952744	49952744	Nonsense_Mutation	C	A	p.E109*
BLCA	TCGA-E7-A6MF-01	PIH1D1	ENST00000597415.1,ENST00000601807.1,ENST00000262265.5,ENST00000596049.1,ENST00000593900.1,ENST00000595516.1	chr19	49951261:49951319:49952731:49952911:49954038:49954093,	49952732	49952911	49952744	49952744	Nonsense_Mutation	C	A	p.E109*
BLCA	TCGA-E7-A7DU-01	ZNF217	ENST00000371471.2,ENST00000302342.3	chr20	52185358:52185803:52188259:52188392:52192265:52192566,	52188260	52188392	52188372	52188372	Nonsense_Mutation	G	A	p.Q1020*
BLCA	TCGA-E7-A7DU-01	PDE1A	ENST00000351439.5,ENST00000409365.1	chr2	183104836:183105019:183129027:183129141:183291304:183291749,	183129028	183129141	183129137	183129137	Nonsense_Mutation	T	A	p.R36*
BLCA	TCGA-E7-A7DU-01	SLC25A39	ENST00000537904.2,ENST00000377095.5,ENST00000590194.1,ENST00000225308.8,ENST00000586016.1	chr17	42397989:42398099:42398425:42398599:42398801:42398926,	42398426	42398599	42398543	42398543	Nonsense_Mutation	G	A	p.Q184*
BLCA	TCGA-E7-A7DU-01	SLC26A10	ENST00000440686.1,ENST00000320442.4,ENST00000474359.2,ENST00000379218.2	chr12	58016341:58016424:58016569:58016717:58016806:58016920,	58016570	58016717	58016601	58016601	Nonsense_Mutation	G	T	p.E275*
BLCA	TCGA-E7-A7DU-01	TMCO4	ENST00000496528.1,ENST00000488449.1,ENST00000294543.6,ENST00000375122.2,ENST00000375127.1	chr1	20097838:20097975:20107072:20107259:20113518:20113610,	20107073	20107259	20107215	20107215	Nonsense_Mutation	G	A	p.Q13*
BLCA	TCGA-E7-A7DU-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123211806:123211908:123215229:123215378:123217270:123217399,	123215230	123215378	123215341	123215341	Nonsense_Mutation	C	T	p.Q963*
BLCA	TCGA-E7-A7DV-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2	chr9	96214665:96214671:96233422:96233669:96238537:96238620,	96233423	96233669	96233450	96233450	Nonsense_Mutation	C	T	p.Q168*
BLCA	TCGA-E7-A7DV-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14109250	14109250	Nonsense_Mutation	C	T	p.Q1654*
BLCA	TCGA-E7-A7PW-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420609	203420609	Nonsense_Mutation	C	T	p.Q741*
BLCA	TCGA-E7-A7XN-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639622	47639622	Nonsense_Mutation	C	T	p.Q239*
BLCA	TCGA-E7-A7XN-01	FUS	ENST00000487509.2,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31195181:31195323:31195529:31195717:31196259:31196500,	31195530	31195717	31195651	31195651	Nonsense_Mutation	C	T	p.Q153*
BLCA	TCGA-E7-A7XN-01	RAB3GAP1	ENST00000539493.1,ENST00000264158.8,ENST00000442034.1,ENST00000487003.1	chr2	135872785:135872951:135878388:135878488:135881734:135881816,	135878389	135878488	135878476	135878476	Nonsense_Mutation	C	T	p.Q246*
BLCA	TCGA-E7-A7XN-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005006	150005006	Nonsense_Mutation	G	A	p.Q407*
BLCA	TCGA-E7-A7XN-01	RUFY2	ENST00000466493.1	chr10	70100909:70101045:70105458:70105668:70105763:70105841,	70105459	70105668	70105551	70105551	Nonsense_Mutation	G	A	p.Q634*
BLCA	TCGA-E7-A7XN-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183200095:183200238:183201321:183201478:183201786:183201821,	183201322	183201478	183201368	183201368	Nonsense_Mutation	C	G	p.S635*
BLCA	TCGA-E7-A7XN-01	IL17RE	ENST00000421412.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3,ENST00000383815.3,ENST00000434065.1	chr3	9952940:9952984:9953126:9953281:9955639:9955708,	9953127	9953281	9953193	9953193	Nonsense_Mutation	C	G	p.S380*
BLCA	TCGA-E7-A7XN-01	SIPA1L3	ENST00000601054.1	chr19	38655410:38655546:38673158:38673380:38682784:38682950,38664265:38664312:38673158:38673380:38682784:38682950,	38673159	38673380	38673327	38673327	Nonsense_Mutation	G	A	p.W1459*
BLCA	TCGA-E7-A7XN-01	C2orf42	ENST00000264434.2	chr2	70406663:70406774:70408294:70409129:70409798:70410067,	70408295	70409129	70408762	70408762	Nonsense_Mutation	G	C	p.S119*
BLCA	TCGA-E7-A7XN-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183817520:183817651:183817840:183818059:183821189:183821321,	183817841	183818059	183817958	183817958	Nonsense_Mutation	G	C	p.S752*
BLCA	TCGA-E7-A7XN-01	POLQ	ENST00000264233.5	chr3	121212324:121212568:121215654:121215779:121217323:121217517,	121215655	121215779	121215688	121215688	Nonsense_Mutation	G	A	p.Q749*
BLCA	TCGA-E7-A7XN-01	CHMP5	ENST00000419016.2,ENST00000223500.8	chr9	33267850:33267897:33270620:33270714:33271149:33271221,	33270621	33270714	33270688	33270688	Nonsense_Mutation	C	T	p.Q97*
BLCA	TCGA-E7-A7XN-01	ITIH5	ENST00000434980.1,ENST00000446830.2,ENST00000397146.2,ENST00000476417.1,ENST00000397145.2,ENST00000298441.6,ENST00000256861.6,ENST00000461751.1	chr10	7618854:7618975:7621717:7622027:7627863:7628032,	7621718	7622027	7621728	7621728	Nonsense_Mutation	G	A	p.Q470*
BLCA	TCGA-E7-A7XN-01	RALGAPB	ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3,ENST00000537204.1	chr20	37121572:37121775:37125995:37126159:37128089:37128276,	37125996	37126159	37126021	37126021	Nonsense_Mutation	C	T	p.R139*
BLCA	TCGA-E7-A7XN-01	SMAD1	ENST00000515385.1,ENST00000394092.2,ENST00000302085.4	chr4	146460955:146461213:146463733:146463850:146467854:146468076,	146463734	146463850	146463793	146463793	Nonsense_Mutation	C	T	p.Q240*
BLCA	TCGA-E7-A7XN-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151836759:151836876:151841797:151841966:151842249:151842380,151836759:151836876:151841797:151841966:151842237:151842380,	151841798	151841966	151841937	151841937	Nonsense_Mutation	G	C	p.S4792*
BLCA	TCGA-E7-A7XN-01	LILRB2	ENST00000314446.5,ENST00000455108.1,ENST00000391749.4,ENST00000434421.1,ENST00000391748.1	chr19	54780234:54780310:54780660:54780783:54781403:54781451,	54780661	54780783	54780688	54780688	Nonsense_Mutation	G	A	p.R485*
BLCA	TCGA-E7-A7XN-01	NIT1	ENST00000496768.1,ENST00000479266.1,ENST00000368009.2,ENST00000368008.1,ENST00000496861.1,ENST00000368007.4,ENST00000492411.1,ENST00000461376.1,ENST00000392190.5	chr1	161088923:161089178:161089298:161089402:161089608:161089706,	161089299	161089402	161089363	161089363	Nonsense_Mutation	C	T	p.Q140*
BLCA	TCGA-E7-A7XN-01	NIT1	ENST00000485594.1	chr1	161088923:161089178:161089282:161089402:161089608:161089706,	161089283	161089402	161089363	161089363	Nonsense_Mutation	C	T	p.Q140*
BLCA	TCGA-E7-A7XN-01	KLHDC2	ENST00000298307.5,ENST00000555443.1,ENST00000553579.1	chr14	50249087:50249175:50249259:50249312:50249547:50249829,	50249260	50249312	50249293	50249293	Nonsense_Mutation	C	T	p.Q360*
BLCA	TCGA-E7-A7XN-01	RFX6	ENST00000487683.1,ENST00000332958.2,ENST00000471966.1	chr6	117216342:117216370:117232097:117232205:117237170:117237248,	117232098	117232205	117232129	117232129	Nonsense_Mutation	C	G	p.S235*
BLCA	TCGA-E7-A7XN-01	VEGFA	ENST00000519767.1	chr6	43746625:43746655:43748468:43748540:43749692:43749789,43746625:43746655:43748468:43748540:43752277:43752295,	43748469	43748540	43748497	43748497	Nonsense_Mutation	C	T	p.Q331*
BLCA	TCGA-E7-A7XN-01	VEGFA	ENST00000523873.1,ENST00000372055.4	chr6	43746625:43746655:43748468:43748591:43749692:43749789,	43748469	43748591	43748497	43748497	Nonsense_Mutation	C	T	p.Q331*
BLCA	TCGA-E7-A7XN-01	VEGFA	ENST00000518689.1,ENST00000413642.3	chr6	43746625:43746655:43748468:43748522:43749692:43749789,	43748469	43748522	43748497	43748497	Nonsense_Mutation	C	T	p.Q331*
BLCA	TCGA-E7-A7XN-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000487821.1	chr3	33870344:33870461:33877535:33877758:33879695:33879733,	33877536	33877758	33877665	33877665	Nonsense_Mutation	C	T	p.R322*
BLCA	TCGA-E7-A85H-01	STEAP1B	ENST00000406890.2	chr7	22532295:22532348:22532942:22533398:22534390:22534505,	22532943	22533398	22532994	22532994	Nonsense_Mutation	G	C	p.Y182*
BLCA	TCGA-E7-A85H-01	STEAP1B	ENST00000483679.1,ENST00000424363.1,ENST00000439708.1,ENST00000404369.4	chr7	22532295:22532348:22532942:22533455:22534390:22534505,	22532943	22533455	22532994	22532994	Nonsense_Mutation	G	C	p.Y182*
BLCA	TCGA-E7-A97P-01	CD1D	ENST00000368171.3	chr1	158151821:158152100:158152667:158152946:158153725:158153825,	158152668	158152946	158152732	158152732	Nonsense_Mutation	C	A	p.C224*
BLCA	TCGA-E7-A97P-01	TEX9	ENST00000352903.2,ENST00000537232.1,ENST00000558083.2,ENST00000561221.2	chr15	56681515:56681598:56683440:56683616:56686362:56686445,	56683441	56683616	56683503	56683503	Nonsense_Mutation	C	G	p.S78*
BLCA	TCGA-E7-A97Q-01	MAP3K8	ENST00000415139.1,ENST00000542547.1	chr10	30723172:30723307:30727844:30728203:30736710:30736878,	30727845	30728203	30728018	30728018	Nonsense_Mutation	C	T	p.Q51*
BLCA	TCGA-FD-A3B3-01	STK3	ENST00000518165.1	chr8	99719374:99719539:99761503:99761618:99779470:99779599,99608259:99608397:99761503:99761618:99779470:99779599,	99761504	99761618	99761532	99761532	Nonsense_Mutation	G	C	p.S136*
BLCA	TCGA-FD-A3B3-01	HPSE2	ENST00000370549.1,ENST00000404542.1,ENST00000370552.3	chr10	100219330:100219496:100242392:100242539:100249807:100249953,	100242393	100242539	100242424	100242424	Nonsense_Mutation	G	A	p.Q528*
BLCA	TCGA-FD-A3B3-01	KIAA0232	ENST00000307659.5,ENST00000425103.1	chr4	6825911:6826411:6843793:6843931:6858890:6858957,	6843794	6843931	6843914	6843914	Nonsense_Mutation	C	T	p.R118*
BLCA	TCGA-FD-A3B3-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000490904.2	chr6	161412875:161413115:161455290:161455481:161469647:161469835,	161455291	161455481	161455436	161455436	Nonsense_Mutation	C	T	p.Q100*
BLCA	TCGA-FD-A3B4-01	ANO10	ENST00000414522.2,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43616300:43616356:43618183:43618753:43621844:43621964,	43618184	43618753	43618536	43618536	Nonsense_Mutation	G	T	p.Y270*
BLCA	TCGA-FD-A3B5-01	TMEM132A	ENST00000544065.1,ENST00000005286.4,ENST00000544098.1,ENST00000453848.2,ENST00000534983.1	chr11	60694830:60694890:60695112:60695331:60696100:60696432,	60695113	60695331	60695125	60695125	Nonsense_Mutation	C	T	p.R110*
BLCA	TCGA-FD-A3B5-01	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43796552	43796552	Nonsense_Mutation	G	T	p.E236*
BLCA	TCGA-FD-A3B5-01	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146824287	146824287	Nonsense_Mutation	C	A	p.E42*
BLCA	TCGA-FD-A3B6-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53283812:53283978:53288349:53288517:53289511:53289691,	53288350	53288517	53288443	53288443	Nonsense_Mutation	C	T	p.R1319*
BLCA	TCGA-FD-A3B6-01	MLH1	ENST00000447829.1	chr3	37053572:37053590:37055922:37056035:37058996:37059090,37053572:37053590:37055922:37056035:37061800:37061954,	37055923	37056035	37056000	37056000	Nonsense_Mutation	C	G	p.S252*
BLCA	TCGA-FD-A3B6-01	SUPT6H	ENST00000347486.4,ENST00000314616.6	chr17	27027363:27027530:27027958:27028146:27028456:27028557,	27027959	27028146	27028139	27028139	Nonsense_Mutation	C	T	p.Q1663*
BLCA	TCGA-FD-A3B6-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437553	122437553	Nonsense_Mutation	C	T	p.R1519*
BLCA	TCGA-FD-A3B6-01	HUS1	ENST00000458191.1	chr7	48003916:48004229:48004896:48005035:48007402:48007522,	48004897	48005035	48004979	48004979	Nonsense_Mutation	G	A	p.Q273*
BLCA	TCGA-FD-A3B6-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351727	89351727	Nonsense_Mutation	G	C	p.S408*
BLCA	TCGA-FD-A3B6-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275328	114275328	Nonsense_Mutation	G	T	p.E1852*
BLCA	TCGA-FD-A3B6-01	LRRC31	ENST00000316428.5,ENST00000264676.5,ENST00000523069.1	chr3	169569406:169569574:169572600:169572768:169574123:169574291,	169572601	169572768	169572606	169572606	Nonsense_Mutation	G	T	p.S329*
BLCA	TCGA-FD-A3B6-01	MTCH2	ENST00000534074.1,ENST00000542981.1,ENST00000302503.3,ENST00000525649.1	chr11	47640390:47640471:47644252:47644328:47647225:47647292,	47644253	47644328	47644272	47644272	Nonsense_Mutation	C	T	p.W269*
BLCA	TCGA-FD-A3B6-01	DNAH11	ENST00000409508.3	chr7	21721163:21721295:21723401:21723562:21726716:21726873,	21723402	21723562	21723453	21723453	Nonsense_Mutation	G	T	p.E1845*
BLCA	TCGA-FD-A3B6-01	MED4	ENST00000258648.2,ENST00000417167.1,ENST00000378586.1	chr13	48657506:48657564:48660417:48660588:48664487:48664554,	48660418	48660588	48660459	48660459	Nonsense_Mutation	G	A	p.Q108*
BLCA	TCGA-FD-A3B6-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842725	128842725	Nonsense_Mutation	G	A	p.Q1212*
BLCA	TCGA-FD-A3B6-01	MARK2	ENST00000361128.5,ENST00000413835.2,ENST00000377810.3,ENST00000408948.3,ENST00000513765.2,ENST00000350490.7,ENST00000502399.3,ENST00000377809.4,ENST00000425897.2,ENST00000508192.1,ENST00000509502.2,ENST00000402010.2,ENST00000315032.8	chr11	63668251:63668351:63668428:63668541:63669669:63669802,	63668429	63668541	63668461	63668461	Nonsense_Mutation	G	T	p.E341*
BLCA	TCGA-FD-A3B7-01	MYNN	ENST00000349841.5,ENST00000356716.4,ENST00000602751.1	chr3	169501264:169501348:169502409:169502496:169504203:169507504,	169502410	169502496	169502469	169502469	Nonsense_Mutation	A	T	p.K515*
BLCA	TCGA-FD-A3B7-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039215	49039215	Nonsense_Mutation	A	T	p.K765*
BLCA	TCGA-FD-A3N5-01	MYO5C	ENST00000261839.7	chr15	52531929:52532076:52534244:52534410:52536552:52536715,	52534245	52534410	52534274	52534274	Nonsense_Mutation	C	A	p.G843*
BLCA	TCGA-FD-A3N5-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089375	32089375	Nonsense_Mutation	G	T	p.E1941*
BLCA	TCGA-FD-A3N5-01	MAP3K7	ENST00000369329.3,ENST00000369325.3	chr6	91246055:91246120:91254270:91254351:91256976:91257106,	91254271	91254351	91254347	91254347	Nonsense_Mutation	A	C	p.Y405*
BLCA	TCGA-FD-A3N5-01	KDM2B	ENST00000377069.4,ENST00000538503.1,ENST00000377071.4,ENST00000538046.2,ENST00000543025.1,ENST00000536437.1	chr12	121932381:121932468:121947369:121947842:121951078:121951205,	121947370	121947842	121947735	121947735	Nonsense_Mutation	C	A	p.E397*
BLCA	TCGA-FD-A3N5-01	ATP8B3	ENST00000531925.1,ENST00000310127.6,ENST00000539485.1,ENST00000525591.1	chr19	1784817:1784945:1785157:1785296:1785467:1785707,	1785158	1785296	1785276	1785276	Nonsense_Mutation	G	C	p.Y1148*
BLCA	TCGA-FD-A3N5-01	ZNF28	ENST00000457749.2	chr19	53308397:53308515:53311259:53311386:53321196:53321281,53304633:53304955:53311259:53311386:53321196:53321281,	53311260	53311386	53311303	53311303	Nonsense_Mutation	G	T	p.Y33*
BLCA	TCGA-FD-A3N5-01	KIAA1324	ENST00000369939.3,ENST00000527996.1,ENST00000369938.1,ENST00000369936.1,ENST00000529753.1,ENST00000490758.2,ENST00000457623.2	chr1	109730798:109730976:109731687:109731816:109732213:109732304,	109731688	109731816	109731742	109731742	Nonsense_Mutation	G	A	p.W425*
BLCA	TCGA-FD-A3N6-01	CELF1	ENST00000310513.5	chr11	47508743:47508793:47510388:47510576:47574543:47574669,	47510389	47510576	47510398	47510398	Nonsense_Mutation	G	A	p.Q57*
BLCA	TCGA-FD-A3NA-01	KRT80	ENST00000313234.5,ENST00000394815.2	chr12	52574296:52574392:52574686:52574747:52579162:52579371,	52574687	52574747	52574698	52574698	Nonsense_Mutation	G	A	p.Q187*
BLCA	TCGA-FD-A3NA-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471531	93471531	Nonsense_Mutation	G	T	p.S68*
BLCA	TCGA-FD-A3NA-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471531	93471531	Nonsense_Mutation	G	T	p.S68*
BLCA	TCGA-FD-A3NA-01	EIF4G3	ENST00000374935.3,ENST00000400422.1,ENST00000374927.4,ENST00000438975.1	chr1	21308880:21308901:21329205:21329301:21377358:21377395,21307540:21307720:21329205:21329301:21377358:21377395,	21329206	21329301	21329220	21329220	Nonsense_Mutation	G	A	p.Q6*
BLCA	TCGA-FD-A3NA-01	NUP85	ENST00000584155.1	chr17	73230847:73230883:73231207:73231296:73231672:73231786,	73231208	73231296	73231253	73231253	Nonsense_Mutation	C	G	p.S609*
BLCA	TCGA-FD-A3NA-01	NUP85	ENST00000578987.1	chr17	73230847:73230883:73231210:73231296:73231672:73231786,	73231211	73231296	73231253	73231253	Nonsense_Mutation	C	G	p.S609*
BLCA	TCGA-FD-A3NA-01	NUP85	ENST00000541827.1,ENST00000245544.4,ENST00000540768.1,ENST00000579298.1,ENST00000579324.1	chr17	73230847:73230883:73231194:73231296:73231672:73231786,	73231195	73231296	73231253	73231253	Nonsense_Mutation	C	G	p.S609*
BLCA	TCGA-FD-A3NA-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449222	155449222	Nonsense_Mutation	G	A	p.Q1147*
BLCA	TCGA-FD-A3NA-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
BLCA	TCGA-FD-A3NA-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236198	33236198	Nonsense_Mutation	C	G	p.S473*
BLCA	TCGA-FD-A3SJ-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151900018:151900149:151902190:151902310:151904384:151904513,	151902191	151902310	151902229	151902229	Nonsense_Mutation	G	C	p.S1308*
BLCA	TCGA-FD-A3SJ-01	SHARPIN	ENST00000398712.2	chr8	145153876:145153897:145153983:145154108:145154179:145154225,	145153984	145154108	145154091	145154091	Nonsense_Mutation	G	A	p.Q314*
BLCA	TCGA-FD-A3SL-01	TBC1D32	ENST00000275159.6,ENST00000464622.1,ENST00000398212.2	chr6	121576473:121576556:121577229:121577431:121600266:121600391,	121577230	121577431	121577357	121577357	Nonsense_Mutation	G	C	p.S603*
BLCA	TCGA-FD-A3SL-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577079	7577079	Nonsense_Mutation	C	A	p.E287*
BLCA	TCGA-FD-A3SN-01	SERF2	ENST00000445816.1	chr15	44085172:44085281:44085907:44086134:44086571:44088287,	44085908	44086134	44086132	44086132	Nonsense_Mutation	C	T	p.Q159*
BLCA	TCGA-FD-A3SN-01	CEP192	ENST00000511820.2,ENST00000510237.1,ENST00000506447.1,ENST00000430049.2,ENST00000325971.8,ENST00000589596.1	chr18	13056629:13056697:13057583:13057732:13059080:13059212,	13057584	13057732	13057683	13057683	Nonsense_Mutation	G	A	p.W1403*
BLCA	TCGA-FD-A3SN-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308756	33308756	Nonsense_Mutation	C	T	p.Q266*
BLCA	TCGA-FD-A3SN-01	BFAR	ENST00000563313.1	chr16	14726830:14726875:14738130:14738466:14743660:14743830,14726830:14726875:14738130:14738466:14748922:14749028,14726830:14726875:14738130:14738466:14742244:14742309,14726830:14726875:14738130:14738466:14755748:14755922,	14738131	14738466	14738279	14738279	Nonsense_Mutation	C	T	p.Q26*
BLCA	TCGA-FD-A3SN-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47819503:47819710:47821464:47821635:47822244:47822397,	47821465	47821635	47821562	47821562	Nonsense_Mutation	C	A	p.S1630*
BLCA	TCGA-FD-A3SN-01	PI4K2B	ENST00000264864.6	chr4	25162293:25162375:25253942:25254097:25256686:25256887,25235596:25236053:25253942:25254097:25256686:25256887,	25253943	25254097	25253958	25253958	Nonsense_Mutation	C	A	p.S95*
BLCA	TCGA-FD-A3SN-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58621248:58621317:58621683:58621782:58622702:58622810,	58621684	58621782	58621779	58621779	Nonsense_Mutation	G	A	p.Q72*
BLCA	TCGA-FD-A3SN-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144997295	144997295	Nonsense_Mutation	C	A	p.E2405*
BLCA	TCGA-FD-A3SO-01	IFNGR2	ENST00000545369.2,ENST00000290219.6,ENST00000405436.1,ENST00000381995.1	chr21	34799190:34799339:34804483:34804643:34805020:34805178,	34804484	34804643	34804515	34804515	Nonsense_Mutation	C	G	p.S198*
BLCA	TCGA-FD-A3SO-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057257	30057257	Nonsense_Mutation	G	T	p.E247*
BLCA	TCGA-FD-A3SO-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48936983	48936983	Nonsense_Mutation	C	T	p.R251*
BLCA	TCGA-FD-A3SO-01	YAP1	ENST00000526343.1,ENST00000537274.1,ENST00000529029.1,ENST00000345877.2,ENST00000282441.5,ENST00000524575.1,ENST00000531439.1	chr11	102094352:102094483:102098199:102098312:102100432:102100694,	102098200	102098312	102098267	102098267	Nonsense_Mutation	C	T	p.R411*
BLCA	TCGA-FD-A3SO-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616710	25616710	Nonsense_Mutation	G	C	p.S204*
BLCA	TCGA-FD-A3SO-01	RANBP3L	ENST00000296604.3,ENST00000515759.1	chr5	36265060:36265200:36265550:36265622:36269491:36269509,	36265551	36265622	36265595	36265595	Nonsense_Mutation	G	C	p.S99*
BLCA	TCGA-FD-A3SO-01	RB1	ENST00000267163.4	chr13	49039340:49039504:49047495:49047526:49050836:49050979,	49047496	49047526	49047507	49047507	Nonsense_Mutation	C	G	p.S834*
BLCA	TCGA-FD-A3SO-01	ZC3H13	ENST00000282007.3,ENST00000242848.4	chr13	46585549:46585689:46594583:46594692:46616298:46616410,	46594584	46594692	46594682	46594682	Nonsense_Mutation	G	C	p.S117*
BLCA	TCGA-FD-A3SO-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579529	7579529	Nonsense_Mutation	C	T	p.W53*
BLCA	TCGA-FD-A3SO-01	FAM173B	ENST00000510052.1	chr5	10227721:10227759:10235322:10235373:10236589:10236727,10227721:10227759:10235322:10235373:10236633:10236727,	10235323	10235373	10235356	10235356	Nonsense_Mutation	G	T	p.Y154*
BLCA	TCGA-FD-A3SP-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65349830	65349830	Nonsense_Mutation	G	T	p.E563*
BLCA	TCGA-FD-A3SP-01	CYP4Z1	ENST00000334194.3	chr1	47546294:47546339:47548005:47548133:47550291:47550416,	47548006	47548133	47548040	47548040	Nonsense_Mutation	G	A	p.W133*
BLCA	TCGA-FD-A3SP-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89133184:89133247:89133382:89133547:89135493:89135710,	89133383	89133547	89133385	89133385	Nonsense_Mutation	G	A	p.Q313*
BLCA	TCGA-FD-A3SQ-01	BCAS2	ENST00000369541.3	chr1	115113320:115113371:115118210:115118372:115123919:115124012,115113320:115113371:115118210:115118372:115119308:115119379,	115118211	115118372	115118216	115118216	Nonsense_Mutation	G	T	p.Y138*
BLCA	TCGA-FD-A3SR-01	NFATC3	ENST00000349223.5	chr16	68224670:68225678:68255098:68255187:68260252:68260374,	68255099	68255187	68255131	68255131	Nonsense_Mutation	C	T	p.Q1047*
BLCA	TCGA-FD-A3SR-01	PPIE	ENST00000497370.1,ENST00000475350.1,ENST00000372835.5,ENST00000482751.1,ENST00000356511.2,ENST00000324379.5,ENST00000372830.1	chr1	40211085:40211170:40214574:40214760:40218581:40218724,	40214575	40214760	40214744	40214744	Nonsense_Mutation	C	G	p.S185*
BLCA	TCGA-FD-A3SR-01	CLCN3	ENST00000507875.1,ENST00000513761.1,ENST00000347613.4,ENST00000511092.1,ENST00000504131.2,ENST00000360642.3	chr4	170601218:170601358:170608808:170608908:170610193:170610296,	170608809	170608908	170608906	170608906	Nonsense_Mutation	C	A	p.S139*
BLCA	TCGA-FD-A3SS-01	C4BPA	ENST00000367070.3	chr1	207307748:207307937:207314450:207314621:207317162:207317330,	207314451	207314621	207314612	207314612	Nonsense_Mutation	C	T	p.Q479*
BLCA	TCGA-FD-A3SS-01	PCDH9	ENST00000377865.2,ENST00000544246.1	chr13	67205341:67205543:67477635:67477737:67799536:67802115,	67477636	67477737	67477695	67477695	Nonsense_Mutation	G	A	p.Q1027*
BLCA	TCGA-FD-A3SS-01	GALC	ENST00000474294.2,ENST00000554916.1,ENST00000544807.2,ENST00000261304.2,ENST00000393569.2,ENST00000556261.1,ENST00000393568.4,ENST00000554372.1,ENST00000557316.1	chr14	88448548:88448587:88450737:88450877:88452832:88452946,	88450738	88450877	88450815	88450815	Nonsense_Mutation	G	A	p.Q169*
BLCA	TCGA-FD-A43N-01	DCPS	ENST00000263579.4	chr11	126176464:126176639:126201299:126201445:126208180:126208294,	126201300	126201445	126201377	126201377	Nonsense_Mutation	C	T	p.R152*
BLCA	TCGA-FD-A43N-01	GALNT7	ENST00000265000.4,ENST00000505308.1,ENST00000503213.1	chr4	174225169:174225269:174235108:174235327:174238784:174238883,	174235109	174235327	174235265	174235265	Nonsense_Mutation	G	T	p.E516*
BLCA	TCGA-FD-A43N-01	SYNE3	ENST00000555759.1,ENST00000557275.1,ENST00000334258.5,ENST00000553340.1	chr14	95921713:95922061:95923513:95923675:95932267:95932577,	95923514	95923675	95923534	95923534	Nonsense_Mutation	G	A	p.Q257*
BLCA	TCGA-FD-A43N-01	UGGT1	ENST00000259253.6,ENST00000376723.3,ENST00000438277.1,ENST00000375990.3	chr2	128878772:128878872:128880759:128880820:128884934:128885026,	128880760	128880820	128880800	128880800	Nonsense_Mutation	G	T	p.E348*
BLCA	TCGA-FD-A43P-01	UACA	ENST00000560523.1,ENST00000379983.2,ENST00000558758.1,ENST00000322954.6,ENST00000560167.1,ENST00000560441.1	chr15	70976695:70976785:70979878:70979985:70980088:70980159,	70979879	70979985	70979931	70979931	Nonsense_Mutation	G	A	p.Q184*
BLCA	TCGA-FD-A43P-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111602964	111602964	Nonsense_Mutation	C	T	p.Q14*
BLCA	TCGA-FD-A43P-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9563375:9563548:9570154:9570681:9577061:9577189,	9570155	9570681	9570272	9570272	Nonsense_Mutation	C	A	p.E486*
BLCA	TCGA-FD-A43P-01	TRMT10B	ENST00000488673.2,ENST00000377753.2,ENST00000377754.2,ENST00000297994.3	chr9	37768072:37768225:37769937:37770016:37770668:37770736,	37769938	37770016	37770008	37770008	Nonsense_Mutation	C	G	p.S215*
BLCA	TCGA-FD-A43P-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	713359	713359	Nonsense_Mutation	C	T	p.Q865*
BLCA	TCGA-FD-A43P-01	TRABD2A	ENST00000496500.1,ENST00000409520.2,ENST00000335459.5,ENST00000479944.1	chr2	85049065:85049224:85051076:85051328:85059178:85059269,	85051077	85051328	85051230	85051230	Nonsense_Mutation	G	C	p.S345*
BLCA	TCGA-FD-A43P-01	SRBD1	ENST00000535761.1,ENST00000490133.1,ENST00000263736.4	chr2	45616231:45616738:45620083:45620268:45640252:45640432,	45620084	45620268	45620237	45620237	Nonsense_Mutation	C	A	p.E849*
BLCA	TCGA-FD-A43P-01	OGG1	ENST00000302036.7,ENST00000339511.5,ENST00000302003.7,ENST00000441094.1,ENST00000302008.8,ENST00000344629.7,ENST00000449570.2	chr3	9793586:9793633:9796387:9796569:9807492:9807796,9793586:9793633:9796387:9796569:9798154:9798305,	9796388	9796569	9796493	9796493	Nonsense_Mutation	G	A	p.W224*
BLCA	TCGA-FD-A43P-01	C19orf44	ENST00000594035.1,ENST00000221671.3,ENST00000593380.1	chr19	16611602:16612362:16613875:16614191:16617511:16617585,	16613876	16614191	16613997	16613997	Nonsense_Mutation	C	G	p.S294*
BLCA	TCGA-FD-A43P-01	LSM14A	ENST00000588582.2,ENST00000544216.3,ENST00000433627.5	chr19	34687538:34687668:34706028:34706205:34706500:34706566,34699833:34699956:34706028:34706205:34706500:34706562,	34706029	34706205	34706098	34706098	Nonsense_Mutation	C	G	p.S203*
BLCA	TCGA-FD-A43P-01	RPS13	ENST00000526895.1,ENST00000525828.1,ENST00000228140.2,ENST00000525634.1	chr11	17097135:17097170:17098714:17098793:17098975:17099020,	17098715	17098793	17098723	17098723	Nonsense_Mutation	G	T	p.S48*
BLCA	TCGA-FD-A43X-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000577880.1	chr18	2739429:2739518:2740700:2740819:2743758:2743926,	2740701	2740819	2740730	2740730	Nonsense_Mutation	C	T	p.Q1182*
BLCA	TCGA-FD-A43X-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44942704:44942853:44945109:44945224:44948987:44949175,	44945110	44945224	44945115	44945115	Nonsense_Mutation	C	T	p.Q1147*
BLCA	TCGA-FD-A43X-01	SIK3	ENST00000375300.1,ENST00000434315.2,ENST00000465421.1,ENST00000415541.1,ENST00000542607.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116729980:116730320:116731989:116732099:116732556:116732642,	116731990	116732099	116732089	116732089	Nonsense_Mutation	G	A	p.Q728*
BLCA	TCGA-FD-A43X-01	YAF2	ENST00000547351.1,ENST00000442791.3	chr12	42555550:42555567:42631400:42631526:42631956:42631982,42604349:42604421:42631400:42631526:42631956:42631982,	42631401	42631526	42631500	42631500	Nonsense_Mutation	G	T	p.S18*
BLCA	TCGA-FD-A5BR-01	CCDC30	ENST00000342022.4,ENST00000390640.4,ENST00000507855.1,ENST00000340612.4,ENST00000477155.1,ENST00000428554.2,ENST00000471390.1	chr1	43076648:43076761:43102907:43103049:43108143:43108280,	43102908	43103049	43102993	43102993	Nonsense_Mutation	A	T	p.K528*
BLCA	TCGA-FD-A5BR-01	SLC12A2	ENST00000262461.2,ENST00000509205.1,ENST00000343225.4	chr5	127477521:127477673:127483313:127483421:127484445:127484569,	127483314	127483421	127483419	127483419	Nonsense_Mutation	C	T	p.Q627*
BLCA	TCGA-FD-A5BR-01	OPA1	ENST00000434811.1,ENST00000495476.1,ENST00000497189.1,ENST00000392438.3,ENST00000361150.2,ENST00000361715.2,ENST00000361908.3,ENST00000361510.2,ENST00000361828.2	chr3	193349400:193349454:193353206:193353311:193354983:193355001,	193353207	193353311	193353261	193353261	Nonsense_Mutation	A	T	p.K300*
BLCA	TCGA-FD-A5BU-01	ITGBL1	ENST00000376180.3	chr13	102106233:102106451:102220049:102220196:102227774:102227897,	102220050	102220196	102220117	102220117	Nonsense_Mutation	C	A	p.Y128*
BLCA	TCGA-FD-A5BV-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40697749:40697936:40699586:40699768:40702268:40702498,	40699587	40699768	40699705	40699705	Nonsense_Mutation	T	A	p.L1299*
BLCA	TCGA-FD-A5BV-01	MED13	ENST00000397786.2	chr17	60050087:60050249:60059558:60060475:60061531:60061728,	60059559	60060475	60059727	60059727	Nonsense_Mutation	T	A	p.K1213*
BLCA	TCGA-FD-A5BV-01	GSK3B	ENST00000264235.8	chr3	119545547:119545702:119582265:119582452:119595259:119595355,119562101:119562200:119582265:119582452:119595259:119595355,	119582266	119582452	119582338	119582338	Nonsense_Mutation	C	A	p.E342*
BLCA	TCGA-FD-A5BX-01	PLEKHG6	ENST00000304581.8	chr12	6428193:6428274:6435593:6435739:6436419:6437112,6428625:6428839:6435593:6435739:6436419:6437112,	6435594	6435739	6435720	6435720	Nonsense_Mutation	C	T	p.Q519*
BLCA	TCGA-FD-A5BX-01	RPN1	ENST00000296255.3,ENST00000497289.1,ENST00000495462.1	chr3	128350963:128351000:128356641:128356948:128363761:128363826,	128356642	128356948	128356737	128356737	Nonsense_Mutation	G	A	p.R180*
BLCA	TCGA-FD-A5BX-01	CBFA2T2	ENST00000492345.1,ENST00000346541.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32210920:32211102:32212569:32212823:32216155:32216241,	32212570	32212823	32212724	32212724	Nonsense_Mutation	C	T	p.Q263*
BLCA	TCGA-FD-A5BX-01	ANAPC5	ENST00000441917.2,ENST00000544442.1,ENST00000534976.1,ENST00000344395.4,ENST00000541887.1,ENST00000261819.3,ENST00000541652.1,ENST00000536366.1	chr12	121775093:121775195:121779805:121779872:121783641:121783834,	121779806	121779872	121779868	121779868	Nonsense_Mutation	C	A	p.E199*
BLCA	TCGA-FD-A5BX-01	ERAP1	ENST00000296754.3,ENST00000443439.2	chr5	96132949:96133012:96136564:96136703:96139105:96139530,	96136565	96136703	96136617	96136617	Nonsense_Mutation	G	C	p.S204*
BLCA	TCGA-FD-A5BY-01	ANKRD27	ENST00000588700.1	chr19	33134477:33134537:33135230:33135385:33140587:33140698,	33135231	33135385	33135367	33135367	Nonsense_Mutation	G	C	p.S130*
BLCA	TCGA-FD-A5BZ-01	ATP1A4	ENST00000470705.1,ENST00000469023.1,ENST00000368081.4,ENST00000477338.1	chr1	160151473:160151604:160151719:160151821:160156065:160156157,	160151720	160151821	160151813	160151813	Nonsense_Mutation	C	A	p.Y987*
BLCA	TCGA-FD-A5BZ-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562608	145562608	Nonsense_Mutation	G	T	p.E766*
BLCA	TCGA-FD-A5C0-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953769	48953769	Nonsense_Mutation	G	T	p.E458*
BLCA	TCGA-FD-A5C1-01	DHX8	ENST00000262415.3,ENST00000540306.1,ENST00000587044.1	chr17	41585176:41585387:41585706:41585888:41590729:41590870,	41585707	41585888	41585853	41585853	Nonsense_Mutation	C	T	p.R823*
BLCA	TCGA-FD-A5C1-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101054	27101054	Nonsense_Mutation	C	T	p.R1446*
BLCA	TCGA-FD-A5C1-01	CYP46A1	ENST00000554917.1,ENST00000556822.1,ENST00000380228.2,ENST00000261835.3,ENST00000554176.1,ENST00000423126.2,ENST00000556313.1	chr14	100184390:100184463:100187575:100187660:100188292:100188344,	100187576	100187660	100187618	100187618	Nonsense_Mutation	C	A	p.Y188*
BLCA	TCGA-FD-A5C1-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000380265.5,ENST00000506714.1	chr4	89306650:89306727:89311803:89312031:89314639:89314734,	89311804	89312031	89311972	89311972	Nonsense_Mutation	C	A	p.S202*
BLCA	TCGA-FD-A62O-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746067:46746232:46746796:46747057:46751033:46752171,	46746797	46747057	46747009	46747009	Nonsense_Mutation	G	C	p.S515*
BLCA	TCGA-FD-A62O-01	YTHDF3	ENST00000524135.1,ENST00000521674.1,ENST00000520640.1,ENST00000517303.1,ENST00000542911.2	chr8	64087895:64087975:64098705:64100303:64122240:64122663,	64098706	64100303	64098993	64098993	Nonsense_Mutation	C	T	p.Q141*
BLCA	TCGA-FD-A62O-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056181	27056181	Nonsense_Mutation	C	T	p.Q393*
BLCA	TCGA-FD-A62P-01	ACMSD	ENST00000485893.1,ENST00000356140.5	chr2	135602802:135602847:135616830:135616927:135620964:135621201,135602802:135602847:135616830:135616927:135619538:135619588,	135616831	135616927	135616890	135616890	Nonsense_Mutation	G	A	p.W54*
BLCA	TCGA-FD-A62P-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347299	89347299	Nonsense_Mutation	G	C	p.S1884*
BLCA	TCGA-FD-A62P-01	KATNB1	ENST00000379661.3	chr16	57786441:57786513:57786689:57786840:57786988:57787179,	57786690	57786840	57786743	57786743	Nonsense_Mutation	C	G	p.S253*
BLCA	TCGA-FD-A62P-01	PRIMPOL	ENST00000515774.1,ENST00000314970.6,ENST00000512834.1,ENST00000503752.1	chr4	185593326:185593614:185599385:185599548:185603401:185603490,	185599386	185599548	185599491	185599491	Nonsense_Mutation	C	G	p.S317*
BLCA	TCGA-FD-A62P-01	CD9	ENST00000540891.1,ENST00000382515.2,ENST00000481267.1,ENST00000382519.4,ENST00000009180.4,ENST00000382518.1	chr12	6344394:6344493:6344641:6344731:6345357:6345428,	6344642	6344731	6344685	6344685	Nonsense_Mutation	C	G	p.S164*
BLCA	TCGA-FD-A62P-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097665	27097665	Nonsense_Mutation	C	G	p.S1085*
BLCA	TCGA-FD-A62P-01	SNW1	ENST00000261531.7,ENST00000556428.1,ENST00000555761.1,ENST00000554775.1	chr14	78184709:78184873:78187053:78187171:78189523:78189618,	78187054	78187171	78187152	78187152	Nonsense_Mutation	C	A	p.E384*
BLCA	TCGA-FD-A62P-01	GIGYF1	ENST00000275732.5	chr7	100279944:100280105:100280212:100280400:100280634:100280853,	100280213	100280400	100280339	100280339	Nonsense_Mutation	C	T	p.W825*
BLCA	TCGA-FD-A6TA-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919940	57919940	Nonsense_Mutation	C	T	p.Q397*
BLCA	TCGA-FD-A6TA-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000381322.1,ENST00000513440.1	chr4	56325314:56325428:56329851:56329972:56336883:56336973,	56329852	56329972	56329885	56329885	Nonsense_Mutation	C	A	p.E176*
BLCA	TCGA-FD-A6TA-01	SLC35B3	ENST00000339306.5,ENST00000379660.4	chr6	8420953:8421061:8422702:8422857:8428169:8428291,	8422703	8422857	8422706	8422706	Nonsense_Mutation	G	A	p.Q191*
BLCA	TCGA-FD-A6TA-01	PREPL	ENST00000378511.3,ENST00000410081.1,ENST00000409411.1,ENST00000409272.1,ENST00000409957.1,ENST00000426481.1,ENST00000541738.1,ENST00000425263.1,ENST00000260648.6,ENST00000378520.3,ENST00000409936.1	chr2	44548211:44548584:44548965:44549039:44549869:44549993,	44548966	44549039	44549007	44549007	Nonsense_Mutation	G	A	p.Q596*
BLCA	TCGA-FD-A6TA-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6,ENST00000525073.2	chr19	1061780:1061887:1062170:1062312:1063542:1063677,	1062171	1062312	1062220	1062220	Nonsense_Mutation	C	T	p.Q1874*
BLCA	TCGA-FD-A6TA-01	ST3GAL6	ENST00000489112.1,ENST00000460774.1,ENST00000490684.1,ENST00000497621.1,ENST00000492254.1,ENST00000468553.1,ENST00000486334.2,ENST00000485391.1,ENST00000483910.1,ENST00000394162.1,ENST00000497008.1	chr3	98487282:98487373:98489722:98489800:98491656:98491760,	98489723	98489800	98489773	98489773	Nonsense_Mutation	C	G	p.S47*
BLCA	TCGA-FD-A6TA-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000348332.3,ENST00000405141.1	chr2	24881529:24881635:24888617:24888784:24896234:24896332,	24888618	24888784	24888754	24888754	Nonsense_Mutation	C	T	p.Q76*
BLCA	TCGA-FD-A6TA-01	LATS2	ENST00000382592.4,ENST00000542899.1	chr13	21553829:21553936:21555604:21555787:21557362:21557945,	21555605	21555787	21555655	21555655	Nonsense_Mutation	G	C	p.S872*
BLCA	TCGA-FD-A6TB-01	NAV2	ENST00000360655.4,ENST00000396085.1,ENST00000349880.4	chr11	19890470:19890543:19901414:19901673:19913979:19914140,	19901415	19901673	19901579	19901579	Nonsense_Mutation	C	T	p.Q226*
BLCA	TCGA-FD-A6TB-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135772809:135772997:135776101:135776224:135776975:135777086,	135776102	135776224	135776220	135776220	Nonsense_Mutation	G	C	p.S836*
BLCA	TCGA-FD-A6TB-01	TCN1	ENST00000257264.3	chr11	59620675:59620794:59622124:59622308:59623341:59623512,	59622125	59622308	59622251	59622251	Nonsense_Mutation	G	C	p.S332*
BLCA	TCGA-FD-A6TB-01	PPP2R5D	ENST00000485511.1,ENST00000230402.6,ENST00000470467.1,ENST00000461010.1,ENST00000394110.3,ENST00000472118.1	chr6	42978401:42978474:42978618:42978735:42978886:42979065,	42978619	42978735	42978733	42978733	Nonsense_Mutation	C	T	p.Q557*
BLCA	TCGA-FD-A6TB-01	TEKT1	ENST00000338694.2	chr17	6719152:6719281:6733505:6733712:6734967:6735025,6722511:6722677:6733505:6733712:6734967:6735025,	6733506	6733712	6733599	6733599	Nonsense_Mutation	G	A	p.R33*
BLCA	TCGA-FD-A6TC-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937123	76937123	Nonsense_Mutation	C	A	p.E1209*
BLCA	TCGA-FD-A6TC-01	MAGED2	ENST00000218439.4,ENST00000396224.1,ENST00000375053.2,ENST00000497484.1,ENST00000375058.1,ENST00000375068.1	chrX	54835735:54835809:54836154:54836646:54837253:54837337,	54836155	54836646	54836548	54836548	Nonsense_Mutation	C	T	p.Q147*
BLCA	TCGA-FD-A6TC-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129914118	129914118	Nonsense_Mutation	G	C	p.S185*
BLCA	TCGA-FD-A6TC-01	ENTPD1	ENST00000371207.3,ENST00000543964.1,ENST00000453258.2,ENST00000371205.4,ENST00000539125.1,ENST00000371203.5,ENST00000483213.1	chr10	97604331:97604392:97605113:97605353:97607202:97607256,	97605114	97605353	97605318	97605318	Nonsense_Mutation	C	T	p.Q122*
BLCA	TCGA-FD-A6TC-01	HEPH	ENST00000441993.2,ENST00000458621.1,ENST00000419594.1	chrX	65382432:65382718:65390399:65390579:65392196:65392270,65384206:65384312:65390399:65390579:65392196:65392270,	65390400	65390579	65390420	65390420	Nonsense_Mutation	C	A	p.S57*
BLCA	TCGA-FD-A6TC-01	ENTPD1	ENST00000371207.3,ENST00000543964.1,ENST00000453258.2,ENST00000371205.4,ENST00000539125.1,ENST00000371203.5,ENST00000483213.1	chr10	97604331:97604392:97605113:97605353:97607202:97607256,	97605114	97605353	97605351	97605351	Nonsense_Mutation	C	T	p.Q133*
BLCA	TCGA-FD-A6TC-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968562	99968562	Nonsense_Mutation	G	T	p.E231*
BLCA	TCGA-FD-A6TC-01	ATE1	ENST00000423243.1,ENST00000540606.1,ENST00000224652.6,ENST00000369043.3,ENST00000455628.1,ENST00000369040.3	chr10	123662031:123662135:123670420:123670666:123681863:123681926,123662031:123662135:123670420:123670666:123673304:123673408,	123670421	123670666	123670502	123670502	Nonsense_Mutation	G	A	p.Q168*
BLCA	TCGA-FD-A6TC-01	ARID1B	ENST00000367148.1,ENST00000275248.4,ENST00000414678.2	chr6	157100566:157100605:157150360:157150555:157222509:157222659,	157150361	157150555	157150397	157150397	Nonsense_Mutation	C	T	p.Q527*
BLCA	TCGA-FD-A6TC-01	ARHGAP6	ENST00000495242.1,ENST00000380732.3,ENST00000534860.1,ENST00000303025.6,ENST00000380736.1,ENST00000413512.3,ENST00000337414.4,ENST00000380717.3,ENST00000380718.1,ENST00000489330.2	chrX	11204355:11204551:11206847:11207104:11215044:11215116,	11206848	11207104	11206912	11206912	Nonsense_Mutation	G	C	p.S338*
BLCA	TCGA-FD-A6TC-01	ICAM5	ENST00000586480.1,ENST00000221980.4	chr19	10403287:10403542:10403673:10403922:10404373:10404619,	10403674	10403922	10403751	10403751	Nonsense_Mutation	G	T	p.E432*
BLCA	TCGA-FD-A6TC-01	SHBG	ENST00000572262.1,ENST00000575314.1,ENST00000380450.4,ENST00000570527.1,ENST00000575903.1,ENST00000570353.1	chr17	7535196:7535333:7536069:7536277:7536521:7536635,	7536070	7536277	7536092	7536092	Nonsense_Mutation	C	A	p.S292*
BLCA	TCGA-FD-A6TC-01	ZNF791	ENST00000458122.3,ENST00000343325.4,ENST00000598225.1,ENST00000597691.1	chr19	12734513:12734640:12735463:12735524:12738534:12738619,	12735464	12735524	12735496	12735496	Nonsense_Mutation	C	T	p.Q55*
BLCA	TCGA-FD-A6TC-01	DPYS	ENST00000351513.2	chr8	105393411:105393542:105405011:105405219:105430943:105431082,105393411:105393542:105405011:105405219:105423976:105424043,105393411:105393542:105405011:105405219:105436474:105436617,	105405012	105405219	105405047	105405047	Nonsense_Mutation	C	A	p.E470*
BLCA	TCGA-FD-A6TC-01	EIF4E3	ENST00000448225.1,ENST00000425534.3,ENST00000295612.3,ENST00000497838.1,ENST00000469524.1,ENST00000496214.2,ENST00000389826.3,ENST00000421769.2	chr3	71743047:71743092:71745610:71745671:71748764:71748859,	71745611	71745671	71745638	71745638	Nonsense_Mutation	C	T	p.W126*
BLCA	TCGA-FD-A6TC-01	TDRD1	ENST00000422662.1,ENST00000369280.1,ENST00000369282.1,ENST00000251864.2	chr10	115977303:115977414:115978172:115978343:115980326:115980602,	115978173	115978343	115978319	115978319	Nonsense_Mutation	C	T	p.Q824*
BLCA	TCGA-FD-A6TD-01	TMEM67	ENST00000409623.3,ENST00000323130.3,ENST00000453321.3,ENST00000519845.1	chr8	94821284:94821389:94822012:94822115:94827532:94827675,	94822013	94822115	94822085	94822085	Nonsense_Mutation	G	T	p.E912*
BLCA	TCGA-FD-A6TD-01	LDLR	ENST00000545707.1	chr19	11213339:11213462:11217240:11217363:11218067:11218185,	11217241	11217363	11217345	11217345	Nonsense_Mutation	G	T	p.E267*
BLCA	TCGA-FD-A6TE-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224627	51224627	Nonsense_Mutation	C	A	p.E1041*
BLCA	TCGA-FD-A6TE-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953760	48953760	Nonsense_Mutation	C	T	p.R455*
BLCA	TCGA-FD-A6TE-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31277350:31277468:31282274:31282405:31283167:31283313,	31282275	31282405	31282368	31282368	Nonsense_Mutation	C	G	p.S174*
BLCA	TCGA-FD-A6TE-01	BAIAP2L1	ENST00000005260.8,ENST00000473569.1,ENST00000462558.1	chr7	97949369:97949441:97949548:97949610:97984353:97984440,	97949549	97949610	97949589	97949589	Nonsense_Mutation	G	T	p.S79*
BLCA	TCGA-FD-A6TE-01	KMT2D	ENST00000547610.1	chr12	49448310:49448534:49448682:49448809:49449058:49449107,	49448683	49448809	49448705	49448705	Nonsense_Mutation	G	A	p.Q52*
BLCA	TCGA-FD-A6TE-01	NEK11	ENST00000510823.1,ENST00000507910.1,ENST00000510688.1,ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000383366.4,ENST00000508196.1,ENST00000356918.4,ENST00000511262.1	chr3	130884273:130884363:130887673:130887781:130889616:130889731,	130887674	130887781	130887719	130887719	Nonsense_Mutation	G	T	p.E408*
BLCA	TCGA-FD-A6TE-01	NEK11	ENST00000510823.1,ENST00000507910.1,ENST00000510688.1,ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000383366.4,ENST00000508196.1,ENST00000356918.4,ENST00000511262.1	chr3	130884273:130884363:130887673:130887781:130889616:130889731,	130887674	130887781	130887755	130887755	Nonsense_Mutation	G	T	p.E420*
BLCA	TCGA-FD-A6TE-01	EGF	ENST00000509996.1	chr4	110920834:110921002:110925660:110925778:110929307:110929386,110920834:110921002:110925660:110925778:110932357:110932464,	110925661	110925778	110925665	110925665	Nonsense_Mutation	C	T	p.Q1060*
BLCA	TCGA-FD-A6TF-01	ADCY2	ENST00000338316.4	chr5	7520850:7521012:7626279:7626429:7690803:7690952,	7626280	7626429	7626358	7626358	Nonsense_Mutation	C	T	p.Q217*
BLCA	TCGA-FD-A6TF-01	IDH3A	ENST00000558554.1,ENST00000557826.1,ENST00000559881.1,ENST00000299518.2	chr15	78447554:78447617:78449889:78449973:78452433:78452548,	78449890	78449973	78449893	78449893	Nonsense_Mutation	C	T	p.Q32*
BLCA	TCGA-FD-A6TF-01	IDH3A	ENST00000559889.1	chr15	78447554:78447617:78449249:78449973:78452433:78452548,	78449250	78449973	78449893	78449893	Nonsense_Mutation	C	T	p.Q32*
BLCA	TCGA-FD-A6TF-01	WAC	ENST00000442148.1,ENST00000375664.4,ENST00000354911.4,ENST00000375646.1,ENST00000428935.1,ENST00000347934.4,ENST00000420266.1,ENST00000448193.1	chr10	28822926:28822963:28824490:28824686:28872327:28872365,	28824491	28824686	28824570	28824570	Nonsense_Mutation	C	A	p.S8*
BLCA	TCGA-FD-A6TF-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15*
BLCA	TCGA-FD-A6TG-01	RAPGEF4	ENST00000538974.1,ENST00000540783.1,ENST00000409036.1,ENST00000397081.3,ENST00000535187.1,ENST00000539331.1,ENST00000264111.6,ENST00000397087.3	chr2	173882153:173882232:173883383:173883530:173885345:173885443,	173883384	173883530	173883403	173883403	Nonsense_Mutation	C	A	p.C675*
BLCA	TCGA-FD-A6TG-01	GABARAPL2	ENST00000568455.1,ENST00000037243.2	chr16	75600749:75600805:75601934:75602107:75611176:75611428,	75601935	75602107	75601962	75601962	Nonsense_Mutation	C	T	p.Q40*
BLCA	TCGA-FD-A6TG-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094470	27094470	Nonsense_Mutation	G	T	p.E1060*
BLCA	TCGA-FD-A6TG-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53666504:53666641:53668600:53668794:53670403:53670643,	53668601	53668794	53668712	53668712	Nonsense_Mutation	G	T	p.E540*
BLCA	TCGA-FD-A6TG-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60522197:60522304:60525061:60525127:60525935:60526006,	60525062	60525127	60525064	60525064	Nonsense_Mutation	C	T	p.Q307*
BLCA	TCGA-FD-A6TG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348908	89348908	Nonsense_Mutation	C	A	p.E1348*
BLCA	TCGA-FD-A6TG-01	LSS	ENST00000464357.1,ENST00000356396.4,ENST00000450351.1,ENST00000457828.2,ENST00000397728.3,ENST00000522411.1	chr21	47636302:47636438:47639389:47639486:47641767:47641889,	47639390	47639486	47639462	47639462	Nonsense_Mutation	C	T	p.W192*
BLCA	TCGA-FD-A6TG-01	ABCG4	ENST00000307417.3,ENST00000531739.1,ENST00000449422.2	chr11	119029538:119029639:119030936:119031095:119031247:119031366,	119030937	119031095	119031019	119031019	Nonsense_Mutation	C	G	p.S507*
BLCA	TCGA-FD-A6TG-01	GDI2	ENST00000380181.3,ENST00000380191.4,ENST00000380132.4	chr10	5808456:5808601:5810175:5810347:5815804:5815904,	5810176	5810347	5810194	5810194	Nonsense_Mutation	G	A	p.Q325*
BLCA	TCGA-FD-A6TH-01	CEP95	ENST00000553956.2,ENST00000556440.2,ENST00000553412.1	chr17	62530702:62530855:62532719:62532866:62533158:62533230,	62532720	62532866	62532807	62532807	Nonsense_Mutation	G	T	p.E720*
BLCA	TCGA-FD-A6TI-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
BLCA	TCGA-FD-A6TI-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
BLCA	TCGA-FD-A6TK-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17744282	17744282	Nonsense_Mutation	C	T	p.Q665*
BLCA	TCGA-FD-A6TK-01	IPO9	ENST00000361565.4	chr1	201843959:201844064:201844279:201844356:201845071:201847132,	201844280	201844356	201844342	201844342	Nonsense_Mutation	C	T	p.Q1001*
BLCA	TCGA-FD-A6TK-01	PDE5A	ENST00000394439.1,ENST00000420633.1	chr4	120517680:120517767:120527863:120528452:120548304:120548788,120517680:120517767:120527863:120528452:120549149:120549202,	120527864	120528452	120528156	120528156	Nonsense_Mutation	G	C	p.S150*
BLCA	TCGA-FJ-A3Z7-01	CHEK2	ENST00000382580.2,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1	chr22	29091697:29091861:29092888:29092975:29095825:29095925,	29092889	29092975	29092917	29092917	Nonsense_Mutation	G	T	p.S135*
BLCA	TCGA-FJ-A3Z7-01	MAN1C1	ENST00000263979.3,ENST00000374332.4,ENST00000473891.1	chr1	26012992:26013027:26073158:26073274:26075745:26075826,	26073159	26073274	26073233	26073233	Nonsense_Mutation	G	T	p.E238*
BLCA	TCGA-FJ-A3Z7-01	M1AP	ENST00000358434.2,ENST00000409585.1,ENST00000290536.5,ENST00000536235.1	chr2	74808921:74808974:74834181:74834350:74842090:74842276,	74834182	74834350	74834257	74834257	Nonsense_Mutation	G	A	p.Q174*
BLCA	TCGA-FJ-A3Z7-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574021	7574021	Nonsense_Mutation	C	A	p.E336*
BLCA	TCGA-FJ-A3Z9-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101468	27101468	Nonsense_Mutation	C	T	p.Q1584*
BLCA	TCGA-FJ-A3ZE-01	DOCK9	ENST00000442173.1,ENST00000448493.2,ENST00000339416.2,ENST00000376460.1	chr13	99520484:99520631:99532151:99532223:99532800:99532926,	99532152	99532223	99532221	99532221	Nonsense_Mutation	G	T	p.Y958*
BLCA	TCGA-FJ-A3ZF-01	ELP2	ENST00000423854.2,ENST00000350494.6,ENST00000542824.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33740894:33740967:33744437:33744630:33747063:33747185,	33744438	33744630	33744590	33744590	Nonsense_Mutation	G	A	p.W638*
BLCA	TCGA-FJ-A3ZF-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958034	76958034	Nonsense_Mutation	T	A	p.K623*
BLCA	TCGA-FJ-A3ZF-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3,ENST00000584754.1	chr18	9550366:9550396:9553319:9553420:9557218:9557380,	9553320	9553420	9553378	9553378	Nonsense_Mutation	G	A	p.Q745*
BLCA	TCGA-FJ-A871-01	PEX13	ENST00000295030.5	chr2	61244864:61244986:61258553:61259248:61272860:61272986,	61258554	61259248	61258969	61258969	Nonsense_Mutation	C	T	p.R170*
BLCA	TCGA-FT-A61P-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156625	70156625	Nonsense_Mutation	G	A	p.R139*
BLCA	TCGA-FT-A61P-01	CACNA1B	ENST00000277550.3	chr9	140907580:140907687:140911590:140911653:140917462:140917562,	140911591	140911653	140911629	140911629	Nonsense_Mutation	C	G	p.S60*
BLCA	TCGA-FT-A61P-01	NAP1L1	ENST00000548273.1	chr12	76453917:76454059:76461150:76461253:76462688:76462773,76453951:76454059:76461150:76461253:76467982:76468019,76453951:76454059:76461150:76461253:76478346:76478392,	76461151	76461253	76461248	76461248	Nonsense_Mutation	G	A	p.Q37*
BLCA	TCGA-FT-A61P-01	TMED1	ENST00000589638.1	chr19	10943726:10943889:10945609:10945739:10945931:10946029,	10945610	10945739	10945678	10945678	Nonsense_Mutation	C	A	p.E133*
BLCA	TCGA-FT-A61P-01	TMED1	ENST00000588259.1	chr19	10943726:10943889:10945609:10945793:10945931:10946029,10943726:10943889:10945609:10945793:10946684:10946877,	10945610	10945793	10945678	10945678	Nonsense_Mutation	C	A	p.E133*
BLCA	TCGA-G2-A2EC-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470474	70470474	Nonsense_Mutation	G	C	p.S294*
BLCA	TCGA-G2-A2EF-01	PFKFB3	ENST00000540253.1,ENST00000379782.3,ENST00000379789.4,ENST00000360521.2,ENST00000477914.1,ENST00000461744.1,ENST00000490474.1,ENST00000467491.1,ENST00000379785.1,ENST00000379775.4,ENST00000317350.4,ENST00000536985.1	chr10	6257183:6257280:6258087:6258154:6258668:6258743,	6258088	6258154	6258137	6258137	Nonsense_Mutation	G	T	p.E117*
BLCA	TCGA-G2-A2EF-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086467	109086467	Nonsense_Mutation	C	T	p.Q228*
BLCA	TCGA-G2-A2EF-01	BEND6	ENST00000370746.3	chr6	56857175:56857353:56879930:56880151:56882004:56882197,	56879931	56880151	56880031	56880031	Nonsense_Mutation	G	A	p.W133*
BLCA	TCGA-G2-A2EF-01	RPA3	ENST00000396682.2,ENST00000223129.4	chr7	7677494:7677603:7678700:7678775:7679950:7680208,	7678701	7678775	7678739	7678739	Nonsense_Mutation	C	A	p.G46*
BLCA	TCGA-G2-A2EF-01	TPP2	ENST00000376065.4	chr13	103301256:103301501:103301757:103301836:103309405:103309475,	103301758	103301836	103301811	103301811	Nonsense_Mutation	C	G	p.S976*
BLCA	TCGA-G2-A2EJ-01	IWS1	ENST00000295321.4	chr2	128253573:128253724:128255715:128255813:128260390:128260448,	128255716	128255813	128255777	128255777	Nonsense_Mutation	C	A	p.E502*
BLCA	TCGA-G2-A2EJ-01	DLG2	ENST00000537455.1,ENST00000398309.2,ENST00000524982.1,ENST00000330014.6,ENST00000398301.2,ENST00000543673.1,ENST00000529111.1,ENST00000532653.1,ENST00000280241.8,ENST00000376106.3,ENST00000376104.2,ENST00000531015.1	chr11	83585462:83585531:83641370:83641526:83673927:83674066,	83641371	83641526	83641425	83641425	Nonsense_Mutation	G	C	p.S376*
BLCA	TCGA-G2-A2EJ-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	66986977:66987098:66988315:66988407:66989156:66989225,	66988316	66988407	66988371	66988371	Nonsense_Mutation	G	A	p.R1221*
BLCA	TCGA-G2-A2EJ-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62394760:62394825:62396240:62396484:62396665:62396764,	62396241	62396484	62396347	62396347	Nonsense_Mutation	G	A	p.Q714*
BLCA	TCGA-G2-A2EK-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44833910:44833960:44870205:44870264:44879854:44879975,	44870206	44870264	44870260	44870260	Nonsense_Mutation	C	T	p.Q147*
BLCA	TCGA-G2-A2EL-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717708	89717708	Nonsense_Mutation	C	T	p.Q245*
BLCA	TCGA-G2-A2EL-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41243707	41243707	Nonsense_Mutation	G	A	p.Q985*
BLCA	TCGA-G2-A2EL-01	LOX	ENST00000505593.1,ENST00000513319.1,ENST00000231004.4,ENST00000503759.1	chr5	121401639:121402444:121405747:121405863:121406188:121406284,	121405748	121405863	121405766	121405766	Nonsense_Mutation	G	C	p.S410*
BLCA	TCGA-G2-A2EL-01	MYO16	ENST00000457511.2,ENST00000357550.2,ENST00000356711.2	chr13	109707393:109707474:109707737:109707943:109753132:109753235,	109707738	109707943	109707814	109707814	Nonsense_Mutation	C	G	p.S1047*
BLCA	TCGA-G2-A2EL-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33807041	33807041	Nonsense_Mutation	G	C	p.S63*
BLCA	TCGA-G2-A2EO-01	ANXA9	ENST00000368947.4	chr1	150960356:150960432:150960566:150960662:150960758:150960817,	150960567	150960662	150960575	150960575	Nonsense_Mutation	C	T	p.Q236*
BLCA	TCGA-G2-A2EO-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229506	7229506	Nonsense_Mutation	C	T	p.Q392*
BLCA	TCGA-G2-A2EO-01	PSMG2	ENST00000317615.6,ENST00000586587.1,ENST00000590217.1	chr18	12703024:12703163:12706548:12706720:12712700:12712759,	12706549	12706720	12706694	12706694	Nonsense_Mutation	C	G	p.S68*
BLCA	TCGA-G2-A2EO-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661277	40661277	Nonsense_Mutation	C	G	p.S348*
BLCA	TCGA-G2-A2EO-01	ZNF133	ENST00000377671.3,ENST00000425686.1,ENST00000401790.1	chr20	18285728:18285822:18286324:18286451:18286941:18287037,	18286325	18286451	18286394	18286394	Nonsense_Mutation	C	T	p.Q22*
BLCA	TCGA-G2-A2EO-01	ZNF133	ENST00000434018.1,ENST00000402618.2	chr20	18269177:18269248:18286311:18286451:18286941:18287037,	18286312	18286451	18286394	18286394	Nonsense_Mutation	C	T	p.Q22*
BLCA	TCGA-G2-A2EO-01	SCCPDH	ENST00000366510.3	chr1	246923258:246923378:246923472:246923529:246927547:246927659,	246923473	246923529	246923504	246923504	Nonsense_Mutation	C	G	p.S322*
BLCA	TCGA-G2-A2EO-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3820570:3820987:3823751:3823931:3824569:3824694,	3823752	3823931	3823904	3823904	Nonsense_Mutation	G	A	p.Q771*
BLCA	TCGA-G2-A2EO-01	SPTAN1	ENST00000461855.1,ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131367574:131367756:131369882:131369982:131370130:131370268,	131369883	131369982	131369932	131369932	Nonsense_Mutation	G	T	p.E1366*
BLCA	TCGA-G2-A2EO-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021428	42021428	Nonsense_Mutation	C	T	p.R1242*
BLCA	TCGA-G2-A2EO-01	NCAPG2	ENST00000541468.1,ENST00000409423.1,ENST00000275830.10,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3,ENST00000432615.1	chr7	158424357:158424409:158436980:158437080:158438210:158438311,	158436981	158437080	158437065	158437065	Nonsense_Mutation	G	C	p.S1099*
BLCA	TCGA-G2-A2EO-01	OAZ2	ENST00000560837.1	chr15	64982664:64982748:64983632:64983790:64995227:64995393,	64983633	64983790	64983649	64983649	Nonsense_Mutation	G	C	p.S54*
BLCA	TCGA-G2-A2EO-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000379960.5,ENST00000399326.3,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1	chr21	35172226:35172233:35183278:35183526:35186216:35186376,	35183279	35183526	35183344	35183344	Nonsense_Mutation	G	A	p.W795*
BLCA	TCGA-G2-A2EO-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981471:201981564:201981767:201981887:201982074:201982164,	201981768	201981887	201981809	201981809	Nonsense_Mutation	C	T	p.Q174*
BLCA	TCGA-G2-A2EO-01	IPO7	ENST00000379719.3	chr11	9431615:9431633:9435801:9435958:9438605:9438695,	9435802	9435958	9435956	9435956	Nonsense_Mutation	C	T	p.Q212*
BLCA	TCGA-G2-A2EO-01	EPB41L3	ENST00000542146.1,ENST00000579271.1	chr18	5397396:5397425:5398019:5398142:5400967:5401042,5397396:5397425:5398019:5398142:5406775:5406967,5397396:5397425:5398019:5398142:5400495:5400594,	5398020	5398142	5398076	5398076	Nonsense_Mutation	G	A	p.R806*
BLCA	TCGA-G2-A2EO-01	AMPD1	ENST00000353928.6	chr1	115231181:115231362:115236056:115236068:115238070:115238207,	115236057	115236068	115236063	115236063	Nonsense_Mutation	C	A	p.E10*
BLCA	TCGA-G2-A2EO-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37728859	37728859	Nonsense_Mutation	G	T	p.S1154*
BLCA	TCGA-G2-A2EO-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135772809:135772997:135776101:135776224:135776975:135777086,	135776102	135776224	135776115	135776115	Nonsense_Mutation	G	C	p.S871*
BLCA	TCGA-G2-A2EO-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39701366:39701531:39703387:39703568:39705218:39705355,	39703388	39703568	39703448	39703448	Nonsense_Mutation	G	C	p.S1407*
BLCA	TCGA-G2-A2EO-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44219473:44219621:44219735:44220004:44220781:44221115,	44219736	44220004	44219877	44219877	Nonsense_Mutation	C	G	p.S535*
BLCA	TCGA-G2-A2EO-01	FAM78B	ENST00000441649.1	chr1	166029137:166029900:166038748:166040000:166135222:166135462,	166038749	166040000	166039523	166039523	Nonsense_Mutation	C	T	p.W247*
BLCA	TCGA-G2-A2EO-01	FAM78B	ENST00000456900.1	chr1	166029137:166029900:166039071:166040000:166135222:166135462,	166039072	166040000	166039523	166039523	Nonsense_Mutation	C	T	p.W247*
BLCA	TCGA-G2-A2EO-01	ENG	ENST00000344849.3,ENST00000373203.4	chr9	130580398:130580656:130580994:130581111:130581900:130581939,	130580995	130581111	130580997	130580997	Nonsense_Mutation	G	A	p.Q476*
BLCA	TCGA-G2-A2EO-01	LRRC49	ENST00000559806.1,ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558808.1,ENST00000558456.1,ENST00000560107.2,ENST00000561081.1,ENST00000560980.1,ENST00000260382.5,ENST00000443425.2,ENST00000560691.1	chr15	71228866:71229161:71256123:71256271:71272439:71272523,	71256124	71256271	71256227	71256227	Nonsense_Mutation	C	T	p.Q293*
BLCA	TCGA-G2-A2EO-01	ANGPT4	ENST00000381922.3	chr20	853401:853763:854926:855057:858803:858970,	854927	855057	854974	854974	Nonsense_Mutation	G	C	p.S435*
BLCA	TCGA-G2-A2ES-01	CIRBP	ENST00000590704.1,ENST00000589710.1,ENST00000589686.1	chr19	1269354:1269409:1270865:1271035:1271138:1271245,	1270866	1271035	1270999	1270999	Nonsense_Mutation	G	A	p.W5*
BLCA	TCGA-G2-A2ES-01	CIRBP	ENST00000587169.1,ENST00000593048.1,ENST00000444172.2,ENST00000591376.1,ENST00000592412.1	chr19	1269354:1269409:1270926:1271035:1271138:1271245,1269354:1269409:1270926:1271035:1271327:1271360,	1270927	1271035	1270999	1270999	Nonsense_Mutation	G	A	p.W5*
BLCA	TCGA-G2-A2ES-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58621248:58621317:58621683:58621782:58622702:58622810,	58621684	58621782	58621689	58621689	Nonsense_Mutation	G	A	p.Q102*
BLCA	TCGA-G2-A2ES-01	USP33	ENST00000370793.1,ENST00000370794.3,ENST00000357428.1	chr1	78167053:78167156:78177431:78177540:78178884:78178966,	78177432	78177540	78177467	78177467	Nonsense_Mutation	T	A	p.K822*
BLCA	TCGA-G2-A3IB-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BLCA	TCGA-G2-A3IE-01	SP140	ENST00000392045.3,ENST00000420434.3	chr2	231109702:231109795:231110577:231110655:231113599:231113683,231109702:231109786:231110577:231110655:231113599:231113683,231109702:231109795:231110577:231110655:231112630:231112780,	231110578	231110655	231110622	231110622	Nonsense_Mutation	G	T	p.E237*
BLCA	TCGA-G2-A3IE-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92471337	92471337	Nonsense_Mutation	G	A	p.Q995*
BLCA	TCGA-G2-A3IE-01	IFNAR1	ENST00000416947.2,ENST00000270139.3,ENST00000442357.2	chr21	34715840:34715982:34717551:34717666:34721396:34721596,	34717552	34717666	34717656	34717656	Nonsense_Mutation	C	T	p.Q260*
BLCA	TCGA-G2-A3IE-01	IFNAR1	ENST00000416947.2,ENST00000270139.3,ENST00000442357.2	chr21	34715840:34715982:34717551:34717666:34721396:34721596,	34717552	34717666	34717650	34717650	Nonsense_Mutation	C	T	p.Q258*
BLCA	TCGA-G2-A3IE-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103798	168103798	Nonsense_Mutation	C	T	p.Q1966*
BLCA	TCGA-G2-A3IE-01	MSH3	ENST00000265081.6	chr5	79960961:79961182:79965915:79966128:79968062:79968179,	79965916	79966128	79965995	79965995	Nonsense_Mutation	C	A	p.S220*
BLCA	TCGA-G2-A3IE-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205225	236205225	Nonsense_Mutation	C	A	p.E374*
BLCA	TCGA-G2-A3VY-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677373	73677373	Nonsense_Mutation	C	G	p.S1239*
BLCA	TCGA-G2-A3VY-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000496323.1	chr2	54882206:54882345:54883050:54883135:54884986:54885183,	54883051	54883135	54883057	54883057	Nonsense_Mutation	G	T	p.E1977*
BLCA	TCGA-G2-A3VY-01	CDAN1	ENST00000356231.3,ENST00000562465.1	chr15	43017686:43017868:43018294:43018358:43018507:43018615,	43018295	43018358	43018340	43018340	Nonsense_Mutation	C	A	p.E1075*
BLCA	TCGA-G2-A3VY-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70617265:70617464:70650274:70650439:70667658:70667803,	70650275	70650439	70650368	70650368	Nonsense_Mutation	C	A	p.E444*
BLCA	TCGA-G2-A3VY-01	NMT2	ENST00000540259.1,ENST00000486786.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15151700:15151838:15154794:15154962:15161341:15161384,	15154795	15154962	15154865	15154865	Nonsense_Mutation	G	C	p.S423*
BLCA	TCGA-G2-A3VY-01	BCAN	ENST00000329117.5	chr1	156621247:156621481:156622039:156622684:156626073:156626181,	156622040	156622684	156622477	156622477	Nonsense_Mutation	C	T	p.R579*
BLCA	TCGA-G2-A3VY-01	UNC13D	ENST00000412096.2,ENST00000207549.4,ENST00000591563.1	chr17	73830155:73830224:73830405:73830612:73830698:73830797,	73830406	73830612	73830498	73830498	Nonsense_Mutation	G	A	p.Q736*
BLCA	TCGA-G2-A3VY-01	TXK	ENST00000514937.1	chr4	48073533:48073691:48078418:48078483:48081928:48082083,	48078419	48078483	48078437	48078437	Nonsense_Mutation	G	C	p.S407*
BLCA	TCGA-G2-A3VY-01	GPAA1	ENST00000529638.1	chr8	145139315:145139512:145139624:145140382:145140475:145140646,	145139625	145140382	145140309	145140309	Nonsense_Mutation	G	T	p.E460*
BLCA	TCGA-G2-A3VY-01	GPAA1	ENST00000534072.1,ENST00000361036.6,ENST00000355091.4	chr8	145139945:145140041:145140191:145140382:145140475:145140646,	145140192	145140382	145140309	145140309	Nonsense_Mutation	G	T	p.E460*
BLCA	TCGA-G2-A3VY-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237530	33237530	Nonsense_Mutation	C	G	p.S917*
BLCA	TCGA-G2-A3VY-01	GAB4	ENST00000465611.1	chr22	17449187:17449273:17468849:17469006:17472762:17473066,	17468850	17469006	17468986	17468986	Nonsense_Mutation	G	A	p.Q184*
BLCA	TCGA-G2-A3VY-01	KIDINS220	ENST00000489024.1,ENST00000427284.1,ENST00000496383.1,ENST00000418530.1,ENST00000256707.3,ENST00000319688.5,ENST00000473731.1,ENST00000488729.1	chr2	8931189:8931354:8933939:8934117:8936900:8936999,	8933940	8934117	8933973	8933973	Nonsense_Mutation	G	A	p.Q415*
BLCA	TCGA-G2-A3VY-01	SEC24B	ENST00000265175.5,ENST00000399100.2	chr4	110354970:110355158:110384056:110384800:110394159:110394342,	110384057	110384800	110384480	110384480	Nonsense_Mutation	C	G	p.S186*
BLCA	TCGA-G2-A3VY-01	SLC9C2	ENST00000536496.1,ENST00000367714.3	chr1	173517527:173517691:173523871:173523953:173526478:173526647,	173523872	173523953	173523900	173523900	Nonsense_Mutation	G	C	p.Y423*
BLCA	TCGA-G2-AA3B-01	FBXO42	ENST00000375592.3,ENST00000478089.1	chr1	16621277:16621412:16632297:16632414:16641663:16641862,	16632298	16632414	16632313	16632313	Nonsense_Mutation	G	A	p.Q118*
BLCA	TCGA-G2-AA3B-01	PRKAA1	ENST00000354209.3,ENST00000397128.2,ENST00000505783.1,ENST00000506652.1	chr5	40767773:40767792:40769517:40769605:40771820:40771965,	40769518	40769605	40769524	40769524	Nonsense_Mutation	G	T	p.S197*
BLCA	TCGA-G2-AA3B-01	AGPAT1	ENST00000336984.6,ENST00000395499.1,ENST00000395497.1,ENST00000395496.1,ENST00000375107.3,ENST00000375104.2	chr6	32138201:32138377:32138713:32138847:32139026:32139282,32138201:32138377:32138713:32138847:32139073:32139282,	32138714	32138847	32138789	32138789	Nonsense_Mutation	G	A	p.R87*
BLCA	TCGA-G2-AA3B-01	YME1L1	ENST00000376016.3,ENST00000326799.3,ENST00000396296.3	chr10	27423759:27423910:27425204:27425314:27431315:27431414,	27425205	27425314	27425215	27425215	Nonsense_Mutation	G	C	p.S234*
BLCA	TCGA-G2-AA3B-01	CCDC117	ENST00000432510.1,ENST00000443309.2,ENST00000453543.1,ENST00000249064.4	chr22	29169712:29169766:29176935:29177160:29179495:29179633,	29176936	29177160	29177153	29177153	Nonsense_Mutation	G	T	p.E153*
BLCA	TCGA-G2-AA3B-01	WARS	ENST00000557722.1,ENST00000556295.1	chr14	100828192:100828258:100835423:100835595:100842596:100842622,100828192:100828258:100835423:100835595:100841619:100841670,100828192:100828258:100835423:100835595:100840472:100840486,100828192:100828258:100835423:100835595:100840316:100840401,	100835424	100835595	100835428	100835428	Nonsense_Mutation	G	C	p.S32*
BLCA	TCGA-G2-AA3B-01	EPHB2	ENST00000544305.1,ENST00000374627.1,ENST00000400191.3,ENST00000374632.3,ENST00000374630.3	chr1	23110884:23111569:23189529:23189685:23191369:23191705,	23189530	23189685	23189568	23189568	Nonsense_Mutation	G	T	p.E284*
BLCA	TCGA-G2-AA3B-01	USP54	ENST00000339859.4,ENST00000394811.2,ENST00000408019.1,ENST00000428547.1	chr10	75277271:75277505:75279554:75279750:75283340:75283508,75277271:75277505:75279554:75279750:75280665:75280785,	75279555	75279750	75279565	75279565	Nonsense_Mutation	G	A	p.Q890*
BLCA	TCGA-G2-AA3B-01	PSMC5	ENST00000375812.4,ENST00000310144.6,ENST00000578570.1,ENST00000584880.1,ENST00000579147.1,ENST00000580864.1,ENST00000581882.1,ENST00000585242.1,ENST00000580063.1	chr17	61908395:61908586:61908686:61908785:61908865:61908883,	61908687	61908785	61908762	61908762	Nonsense_Mutation	G	T	p.E316*
BLCA	TCGA-G2-AA3B-01	CSF3R	ENST00000373104.1,ENST00000484762.1,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4,ENST00000464465.2	chr1	36932221:36932428:36932830:36932912:36933158:36933252,	36932831	36932912	36932836	36932836	Nonsense_Mutation	C	T	p.W647*
BLCA	TCGA-G2-AA3B-01	DLG5	ENST00000475613.2,ENST00000372388.2,ENST00000424842.1,ENST00000372391.2,ENST00000463362.1,ENST00000459739.1	chr10	79556208:79556352:79565422:79565619:79566515:79566686,	79565423	79565619	79565545	79565545	Nonsense_Mutation	G	T	p.S1681*
BLCA	TCGA-G2-AA3B-01	LRRC14	ENST00000292524.1	chr8	145743390:145743425:145744998:145745438:145745621:145745771,	145744999	145745438	145745405	145745405	Nonsense_Mutation	C	G	p.S99*
BLCA	TCGA-G2-AA3B-01	LRTM1	ENST00000493075.1	chr3	54952359:54952919:54958645:54959242:55000954:55001115,	54958646	54959242	54958790	54958790	Nonsense_Mutation	G	A	p.Q154*
BLCA	TCGA-G2-AA3C-01	BEND6	ENST00000370746.3	chr6	56846508:56846728:56857175:56857353:56879930:56879958,	56857176	56857353	56857329	56857329	Nonsense_Mutation	C	T	p.R92*
BLCA	TCGA-G2-AA3D-01	CHCHD3	ENST00000448878.1,ENST00000496427.1,ENST00000262570.5,ENST00000476546.1	chr7	132470285:132470421:132481202:132481338:132523158:132523229,	132481203	132481338	132481277	132481277	Nonsense_Mutation	C	A	p.E196*
BLCA	TCGA-G2-AA3D-01	ST14	ENST00000278742.5	chr11	130068841:130068964:130069845:130070032:130078304:130078579,	130069846	130070032	130069861	130069861	Nonsense_Mutation	C	G	p.S608*
BLCA	TCGA-GC-A3I6-01	BTG3	ENST00000348354.6	chr21	18971038:18971142:18977177:18977315:18981289:18981470,	18977178	18977315	18977218	18977218	Nonsense_Mutation	C	A	p.E91*
BLCA	TCGA-GC-A3I6-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144881429:144881622:144882445:144882881:144886096:144886329,	144882446	144882881	144882724	144882724	Nonsense_Mutation	G	A	p.Q1236*
BLCA	TCGA-GC-A3I6-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230723895	230723895	Nonsense_Mutation	G	C	p.S165*
BLCA	TCGA-GC-A3I6-01	AGPAT2	ENST00000371694.3	chr9	139571036:139571132:139571412:139571588:139571874:139572008,139569186:139569259:139571412:139571588:139571874:139572008,	139571413	139571588	139571568	139571568	Nonsense_Mutation	C	A	p.E113*
BLCA	TCGA-GC-A3OO-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256687	9256687	Nonsense_Mutation	C	G	p.S1141*
BLCA	TCGA-GC-A3OO-01	CMPK1	ENST00000371871.4	chr1	47840580:47840657:47840868:47840965:47842375:47842795,47838626:47838779:47840868:47840965:47842375:47842795,	47840869	47840965	47840885	47840885	Nonsense_Mutation	C	T	p.Q189*
BLCA	TCGA-GC-A3OO-01	TPR	ENST00000367478.4	chr1	186280783:186283158:186283760:186283856:186286613:186286732,	186283761	186283856	186283842	186283842	Nonsense_Mutation	G	A	p.Q2319*
BLCA	TCGA-GC-A3OO-01	PHTF2	ENST00000454592.1,ENST00000307305.8,ENST00000415251.2,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2,ENST00000450574.1	chr7	77538109:77538275:77539561:77539726:77549595:77549782,	77539562	77539726	77539723	77539723	Nonsense_Mutation	C	G	p.S224*
BLCA	TCGA-GC-A3RB-01	NR2C2	ENST00000425241.1	chr3	14989235:14989413:15045382:15045493:15055095:15055225,	15045383	15045493	15045491	15045491	Nonsense_Mutation	C	T	p.Q24*
BLCA	TCGA-GC-A3RB-01	PLAUR	ENST00000339082.3,ENST00000221264.4,ENST00000593939.1,ENST00000340093.3,ENST00000599892.1,ENST00000602141.1,ENST00000601723.1	chr19	44160717:44160792:44169467:44169611:44171732:44171843,	44169468	44169611	44169569	44169569	Nonsense_Mutation	G	T	p.S70*
BLCA	TCGA-GC-A3RC-01	SEC61A2	ENST00000475268.1,ENST00000379033.3,ENST00000379020.4,ENST00000419021.1,ENST00000304267.8,ENST00000495368.1,ENST00000298428.9	chr10	12191854:12191960:12197776:12197930:12198905:12199066,	12197777	12197930	12197894	12197894	Nonsense_Mutation	A	T	p.K172*
BLCA	TCGA-GC-A3RC-01	ISPD	ENST00000407010.2	chr7	16348147:16348252:16415716:16415866:16445685:16445962,	16415717	16415866	16415851	16415851	Nonsense_Mutation	G	A	p.R184*
BLCA	TCGA-GC-A3RC-01	TRMT1	ENST00000592062.1,ENST00000437766.1,ENST00000357720.4,ENST00000221504.8,ENST00000588511.1,ENST00000593157.1	chr19	13220194:13220280:13220363:13220498:13220582:13220652,	13220364	13220498	13220477	13220477	Nonsense_Mutation	C	A	p.E400*
BLCA	TCGA-GC-A3RD-01	FAM214A	ENST00000399202.4	chr15	52903429:52903452:52903771:52903974:52905869:52906054,52903429:52903452:52903771:52903974:52970202:52970319,	52903772	52903974	52903959	52903959	Nonsense_Mutation	G	A	p.R73*
BLCA	TCGA-GC-A3RD-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280167	114280167	Nonsense_Mutation	G	T	p.E3465*
BLCA	TCGA-GC-A3WC-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540391	187540391	Nonsense_Mutation	G	C	p.S2450*
BLCA	TCGA-GC-A3WC-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577082	7577082	Nonsense_Mutation	C	A	p.E286*
BLCA	TCGA-GC-A3WC-01	PPFIA3	ENST00000602351.1,ENST00000602848.1	chr19	49646240:49646261:49649199:49649262:49651339:49651515,	49649200	49649262	49649227	49649227	Nonsense_Mutation	G	T	p.E925*
BLCA	TCGA-GC-A3WC-01	NDRG2	ENST00000397858.1,ENST00000298687.5,ENST00000554104.1,ENST00000557353.1,ENST00000298684.5,ENST00000556147.1,ENST00000556008.1,ENST00000555158.1,ENST00000553793.1,ENST00000403829.3,ENST00000360463.3,ENST00000556366.1,ENST00000554143.1,ENST00000397855.3,ENST00000350792.3,ENST00000397851.2,ENST00000553593.1,ENST00000553503.1,ENST00000397853.3	chr14	21486362:21486398:21486615:21486663:21486921:21486973,	21486616	21486663	21486650	21486650	Nonsense_Mutation	G	C	p.S276*
BLCA	TCGA-GC-A3WC-01	SIK2	ENST00000304987.3	chr11	111491062:111491126:111558724:111558886:111571609:111571734,	111558725	111558886	111558772	111558772	Nonsense_Mutation	A	T	p.K122*
BLCA	TCGA-GC-A3YS-01	SMAD9	ENST00000350148.5	chr13	37427555:37427812:37439673:37439895:37446794:37447052,	37439674	37439895	37439763	37439763	Nonsense_Mutation	G	C	p.S305*
BLCA	TCGA-GC-A3YS-01	TACC1	ENST00000522904.1,ENST00000520973.1,ENST00000518415.1,ENST00000520615.1,ENST00000317827.4,ENST00000443286.2,ENST00000520340.1	chr8	38646221:38646337:38677039:38678153:38682825:38682886,	38677040	38678153	38677879	38677879	Nonsense_Mutation	C	T	p.R373*
BLCA	TCGA-GC-A3YS-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277740	238277740	Nonsense_Mutation	G	A	p.R1456*
BLCA	TCGA-GC-A3YS-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799983	39799983	Nonsense_Mutation	C	T	p.Q2575*
BLCA	TCGA-GC-A3YS-01	DUSP11	ENST00000272444.3	chr2	73989720:73989986:73993544:73993721:73993954:73994020,	73993545	73993721	73993695	73993695	Nonsense_Mutation	G	C	p.S262*
BLCA	TCGA-GC-A6I1-01	AMFR	ENST00000290649.5	chr16	56419830:56419934:56423096:56423287:56435644:56435687,	56423097	56423287	56423190	56423190	Nonsense_Mutation	G	A	p.Q395*
BLCA	TCGA-GC-A6I1-01	SVIL	ENST00000375400.3	chr10	29815889:29815985:29818633:29818773:29819535:29819597,29813400:29813644:29818633:29818773:29819535:29819597,	29818634	29818773	29818752	29818752	Nonsense_Mutation	C	A	p.E710*
BLCA	TCGA-GC-A6I1-01	WNK1	ENST00000315939.6,ENST00000537687.1,ENST00000530271.2,ENST00000447667.2	chr12	862731:863490:922807:922980:936207:936428,	922808	922980	922874	922874	Nonsense_Mutation	C	T	p.Q276*
BLCA	TCGA-GC-A6I1-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420670	49420670	Nonsense_Mutation	G	A	p.R5027*
BLCA	TCGA-GC-A6I1-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39588289	39588289	Nonsense_Mutation	G	C	p.S367*
BLCA	TCGA-GC-A6I1-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6,ENST00000530092.1	chr19	1054778:1054877:1055095:1055350:1055905:1055938,	1055096	1055350	1055153	1055153	Nonsense_Mutation	G	A	p.W1336*
BLCA	TCGA-GC-A6I1-01	OS9	ENST00000315970.7,ENST00000435406.2,ENST00000552285.1,ENST00000439210.2,ENST00000389146.6,ENST00000389142.5	chr12	58109542:58109753:58109874:58109976:58110194:58110295,	58109875	58109976	58109878	58109878	Nonsense_Mutation	C	G	p.S265*
BLCA	TCGA-GC-A6I1-01	OS9	ENST00000257966.8,ENST00000550438.1,ENST00000551035.1	chr12	58109542:58109753:58109871:58109976:58110194:58110295,	58109872	58109976	58109878	58109878	Nonsense_Mutation	C	G	p.S265*
BLCA	TCGA-GC-A6I3-01	CHD2	ENST00000557381.1,ENST00000557759.1,ENST00000394196.4	chr15	93555574:93555674:93557925:93558139:93563241:93563303,	93557926	93558139	93558043	93558043	Nonsense_Mutation	C	T	p.Q1604*
BLCA	TCGA-GC-A6I3-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000565474.1,ENST00000447066.2	chr16	74530526:74530542:74537428:74537644:74542736:74542823,	74537429	74537644	74537566	74537566	Nonsense_Mutation	C	A	p.E213*
BLCA	TCGA-GC-A6I3-01	SERAC1	ENST00000607742.1,ENST00000367104.3,ENST00000367101.1,ENST00000367102.2,ENST00000606965.1	chr6	158565330:158565452:158567813:158567945:158569896:158569986,	158567814	158567945	158567876	158567876	Nonsense_Mutation	G	C	p.S142*
BLCA	TCGA-GC-A6I3-01	CLIP3	ENST00000593074.1,ENST00000360535.4	chr19	36515297:36515534:36517048:36517167:36517487:36517649,	36517049	36517167	36517131	36517131	Nonsense_Mutation	G	C	p.S200*
BLCA	TCGA-GC-A6I3-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368269	37368269	Nonsense_Mutation	C	G	p.S1631*
BLCA	TCGA-GC-A6I3-01	CDH17	ENST00000027335.3,ENST00000450165.2,ENST00000441892.2	chr8	95160971:95161102:95164095:95164340:95172198:95172390,	95164096	95164340	95164112	95164112	Nonsense_Mutation	C	A	p.E594*
BLCA	TCGA-GD-A2C5-01	PPFIA1	ENST00000389547.3,ENST00000530294.1,ENST00000253925.7	chr11	70189856:70189998:70194294:70194526:70200406:70200558,	70194295	70194526	70194497	70194497	Nonsense_Mutation	G	T	p.E712*
BLCA	TCGA-GD-A2C5-01	SEZ6L	ENST00000360929.3	chr22	26747017:26747209:26761337:26761532:26773638:26773686,26747017:26747209:26761337:26761532:26771540:26771655,26747017:26747209:26761337:26761532:26769416:26769449,26743754:26743879:26761337:26761532:26771540:26771655,	26761338	26761532	26761376	26761376	Nonsense_Mutation	G	T	p.E880*
BLCA	TCGA-GD-A2C5-01	PDXK	ENST00000468090.1	chr21	45153949:45154004:45161547:45161652:45165959:45166006,	45161548	45161652	45161560	45161560	Nonsense_Mutation	G	A	p.W52*
BLCA	TCGA-GD-A2C5-01	SIL1	ENST00000508639.1,ENST00000513453.1,ENST00000509534.1,ENST00000394817.2,ENST00000265195.5	chr5	138378391:138378408:138386626:138386735:138456723:138456859,	138386627	138386735	138386694	138386694	Nonsense_Mutation	G	A	p.Q96*
BLCA	TCGA-GD-A2C5-01	CDCA7	ENST00000410019.3,ENST00000347703.3,ENST00000410101.3,ENST00000496441.1,ENST00000306721.3	chr2	174230179:174230320:174231010:174231160:174231877:174232014,	174231011	174231160	174231089	174231089	Nonsense_Mutation	C	T	p.R372*
BLCA	TCGA-GD-A2C5-01	ECM1	ENST00000346569.6,ENST00000369047.4	chr1	150482136:150482238:150482397:150482478:150482577:150482628,	150482398	150482478	150482400	150482400	Nonsense_Mutation	C	T	p.Q76*
BLCA	TCGA-GD-A2C5-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482400	150482400	Nonsense_Mutation	C	T	p.Q76*
BLCA	TCGA-GD-A2C5-01	EPN3	ENST00000537145.1,ENST00000574464.1,ENST00000512379.1,ENST00000268933.3	chr17	48616547:48616676:48618153:48618423:48618589:48618694,48617607:48617695:48618153:48618423:48618589:48618694,	48618154	48618423	48618226	48618226	Nonsense_Mutation	C	T	p.Q239*
BLCA	TCGA-GD-A2C5-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097694	27097694	Nonsense_Mutation	C	T	p.Q1095*
BLCA	TCGA-GD-A2C5-01	MTRF1L	ENST00000485283.1,ENST00000463251.1	chr6	153315647:153315811:153316397:153316454:153319684:153319764,	153316398	153316454	153316427	153316427	Nonsense_Mutation	C	A	p.E123*
BLCA	TCGA-GD-A2C5-01	MTRF1L	ENST00000367230.1	chr6	153315647:153315811:153316378:153316454:153319684:153319764,	153316379	153316454	153316427	153316427	Nonsense_Mutation	C	A	p.E123*
BLCA	TCGA-GD-A2C5-01	MTRF1L	ENST00000367233.5,ENST00000367231.5	chr6	153315647:153315811:153316270:153316454:153319684:153319764,	153316271	153316454	153316427	153316427	Nonsense_Mutation	C	A	p.E123*
BLCA	TCGA-GD-A2C5-01	MTRF1L	ENST00000485512.1,ENST00000464135.1	chr6	153315647:153315811:153316270:153316429:153319684:153319764,	153316271	153316429	153316427	153316427	Nonsense_Mutation	C	A	p.E123*
BLCA	TCGA-GD-A3OP-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000550260.1,ENST00000522085.1,ENST00000548993.1,ENST00000347328.5,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50824280:50824353:50829270:50829407:50831517:50831561,	50829271	50829407	50829320	50829320	Nonsense_Mutation	C	T	p.Q150*
BLCA	TCGA-GD-A3OP-01	CHD1	ENST00000284049.3	chr5	98208120:98208259:98209296:98209427:98210775:98210817,	98209297	98209427	98209411	98209411	Nonsense_Mutation	G	A	p.R1153*
BLCA	TCGA-GD-A3OP-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938191	76938191	Nonsense_Mutation	C	A	p.E853*
BLCA	TCGA-GD-A3OP-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14397151:14397263:14398988:14399179:14401071:14401173,	14398989	14399179	14399069	14399069	Nonsense_Mutation	C	T	p.R1502*
BLCA	TCGA-GD-A3OP-01	MED13	ENST00000397786.2	chr17	60050087:60050249:60059558:60060475:60061531:60061728,	60059559	60060475	60059762	60059762	Nonsense_Mutation	G	T	p.S1201*
BLCA	TCGA-GD-A3OP-01	EPHX4	ENST00000370383.4	chr1	92511088:92511217:92515873:92515977:92518066:92518215,	92515874	92515977	92515897	92515897	Nonsense_Mutation	C	T	p.Q210*
BLCA	TCGA-GD-A3OP-01	AGO2	ENST00000523609.1,ENST00000520412.1,ENST00000220592.5	chr8	141545566:141545668:141549418:141549553:141551262:141551457,	141549419	141549553	141549523	141549523	Nonsense_Mutation	C	A	p.E689*
BLCA	TCGA-GD-A3OP-01	KRT72	ENST00000537672.2,ENST00000398066.3,ENST00000550829.1,ENST00000293745.2	chr12	52981414:52981635:52984619:52984745:52985247:52985412,	52984620	52984745	52984645	52984645	Nonsense_Mutation	G	C	p.S355*
BLCA	TCGA-GD-A3OP-01	TNK2	ENST00000381916.2,ENST00000481865.1,ENST00000392400.1,ENST00000316664.3,ENST00000428187.1,ENST00000439230.1,ENST00000438207.1,ENST00000333602.6	chr3	195605992:195606046:195608921:195609199:195609315:195609398,195605992:195606046:195608921:195609199:195610027:195610180,	195608922	195609199	195608974	195608974	Nonsense_Mutation	G	A	p.Q279*
BLCA	TCGA-GD-A3OP-01	HERC2	ENST00000261609.7	chr15	28397904:28397976:28408239:28408431:28412832:28412973,	28408240	28408431	28408392	28408392	Nonsense_Mutation	G	A	p.Q3532*
BLCA	TCGA-GD-A3OP-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3	chr3	42218305:42218382:42226176:42226293:42229536:42229637,	42226177	42226293	42226217	42226217	Nonsense_Mutation	C	A	p.S135*
BLCA	TCGA-GD-A3OS-01	KCTD2	ENST00000375286.3,ENST00000322444.6,ENST00000577516.1,ENST00000581589.1	chr17	73049108:73049200:73055604:73055700:73058214:73058340,	73055605	73055700	73055695	73055695	Nonsense_Mutation	G	T	p.E211*
BLCA	TCGA-GD-A3OS-01	EXT2	ENST00000358681.4,ENST00000343631.3,ENST00000533608.1,ENST00000395673.3	chr11	44135734:44135851:44146338:44146534:44148365:44148505,	44146339	44146534	44146519	44146519	Nonsense_Mutation	C	G	p.Y341*
BLCA	TCGA-GD-A3OS-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
BLCA	TCGA-GD-A3OS-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
BLCA	TCGA-GD-A6C6-01	LIPH	ENST00000424591.2	chr3	185251463:185251467:185252552:185252920:185270210:185270298,	185252553	185252920	185252791	185252791	Nonsense_Mutation	G	C	p.S60*
BLCA	TCGA-GD-A6C6-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194159584:194159701:194162039:194162190:194165453:194165515,	194162040	194162190	194162096	194162096	Nonsense_Mutation	C	A	p.E552*
BLCA	TCGA-GD-A6C6-01	CATSPERG	ENST00000412458.2,ENST00000410018.1,ENST00000215069.4,ENST00000409235.3,ENST00000312265.5	chr19	38853015:38853214:38853353:38853472:38855530:38855611,	38853354	38853472	38853419	38853419	Nonsense_Mutation	G	T	p.E808*
BLCA	TCGA-GD-A6C6-01	CATSPERG	ENST00000471517.1	chr19	38852849:38852912:38853015:38853472:38855530:38855611,	38853016	38853472	38853419	38853419	Nonsense_Mutation	G	T	p.E808*
BLCA	TCGA-GD-A6C6-01	RHOBTB3	ENST00000379982.3	chr5	95087942:95088054:95091099:95091465:95099211:95099246,	95091100	95091465	95091439	95091439	Nonsense_Mutation	C	G	p.S341*
BLCA	TCGA-GD-A76B-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144134960	144134960	Nonsense_Mutation	G	T	p.E611*
BLCA	TCGA-GD-A76B-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823588	114823588	Nonsense_Mutation	C	A	p.G548*
BLCA	TCGA-GD-A76B-01	RNF138	ENST00000257190.5,ENST00000261593.3	chr18	29703487:29703537:29704696:29704808:29706655:29706763,	29704697	29704808	29704794	29704794	Nonsense_Mutation	C	T	p.Q183*
BLCA	TCGA-GU-A42P-01	CCDC62	ENST00000392441.4,ENST00000341952.4,ENST00000253079.6	chr12	123265710:123265877:123270265:123270367:123273304:123273358,	123270266	123270367	123270332	123270332	Nonsense_Mutation	C	T	p.R155*
BLCA	TCGA-GU-A42P-01	EMC3	ENST00000487465.1,ENST00000245046.2,ENST00000497557.1,ENST00000429759.1	chr3	10015311:10015393:10016067:10016172:10018640:10018734,	10016068	10016172	10016100	10016100	Nonsense_Mutation	C	T	p.W127*
BLCA	TCGA-GU-A42P-01	CCHCR1	ENST00000451521.2,ENST00000396263.2,ENST00000376266.5,ENST00000396268.3	chr6	31111038:31111190:31112463:31112565:31112661:31112850,	31112464	31112565	31112514	31112514	Nonsense_Mutation	G	T	p.S706*
BLCA	TCGA-GU-A42P-01	CCHCR1	ENST00000486060.1	chr6	31111038:31111190:31112405:31112565:31112661:31112850,	31112406	31112565	31112514	31112514	Nonsense_Mutation	G	T	p.S706*
BLCA	TCGA-GU-A42Q-01	ELOVL1	ENST00000470769.1,ENST00000413844.2,ENST00000487209.1,ENST00000482302.1,ENST00000497569.1,ENST00000372458.3,ENST00000497050.1	chr1	43829720:43829808:43829994:43830131:43830285:43830318,43829720:43829808:43829994:43830131:43830212:43830318,	43829995	43830131	43830026	43830026	Nonsense_Mutation	C	T	p.W196*
BLCA	TCGA-GU-A42Q-01	RPH3A	ENST00000548197.1,ENST00000546703.1,ENST00000543106.2,ENST00000552667.1,ENST00000389385.4,ENST00000547840.1,ENST00000548866.1,ENST00000549769.1,ENST00000547728.1,ENST00000549736.1,ENST00000415485.3,ENST00000551198.1	chr12	113230051:113230068:113266105:113266194:113285500:113285536,113229947:113230068:113266105:113266194:113274295:113274307,	113266106	113266194	113266187	113266187	Nonsense_Mutation	C	T	p.Q22*
BLCA	TCGA-GU-A42Q-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
BLCA	TCGA-GU-A42Q-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
BLCA	TCGA-GU-A42Q-01	SMOC2	ENST00000354536.5,ENST00000356284.2	chr6	169053882:169053908:169064753:169064791:169067100:169067183,	169064754	169064791	169064771	169064771	Nonsense_Mutation	G	T	p.E446*
BLCA	TCGA-GU-A42Q-01	SGCE	ENST00000265735.7,ENST00000447873.1,ENST00000472326.2,ENST00000437425.2	chr7	94214781:94214827:94218000:94218044:94228086:94228275,	94218001	94218044	94218031	94218031	Nonsense_Mutation	G	A	p.Q459*
BLCA	TCGA-GU-A42R-01	ANKMY1	ENST00000401804.1,ENST00000272972.3,ENST00000403283.1,ENST00000361678.4,ENST00000373320.4,ENST00000373318.2,ENST00000391987.1,ENST00000406958.1	chr2	241420409:241420514:241421599:241421678:241439374:241439521,	241421600	241421678	241421610	241421610	Nonsense_Mutation	C	A	p.E870*
BLCA	TCGA-GU-A42R-01	ASB8	ENST00000536549.1,ENST00000535055.1,ENST00000540782.1,ENST00000539503.1,ENST00000539528.1	chr12	48545064:48545088:48547150:48547308:48551241:48551260,	48547151	48547308	48547243	48547243	Nonsense_Mutation	G	A	p.Q13*
BLCA	TCGA-GU-A42R-01	ASB8	ENST00000535988.1,ENST00000536953.1,ENST00000536071.1	chr12	48545064:48545088:48547150:48547312:48551241:48551260,	48547151	48547312	48547243	48547243	Nonsense_Mutation	G	A	p.Q13*
BLCA	TCGA-GU-A42R-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27100988	27100988	Nonsense_Mutation	C	T	p.Q1424*
BLCA	TCGA-GU-A42R-01	PASK	ENST00000358649.4,ENST00000403638.3	chr2	242078166:242078209:242082251:242082489:242088828:242088850,242079988:242080168:242082251:242082489:242088828:242088850,	242082252	242082489	242082263	242082263	Nonsense_Mutation	G	A	p.Q11*
BLCA	TCGA-GU-A42R-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000505090.1,ENST00000415618.2,ENST00000504734.1,ENST00000512607.2,ENST00000452673.2	chr5	179150664:179150780:179151657:179151784:179153680:179153736,	179151658	179151784	179151700	179151700	Nonsense_Mutation	C	T	p.Q521*
BLCA	TCGA-GU-A42R-01	UGP2	ENST00000467648.2,ENST00000337130.5,ENST00000445915.2,ENST00000394417.2	chr2	64113474:64113672:64114535:64114778:64117214:64117319,	64114536	64114778	64114602	64114602	Nonsense_Mutation	G	T	p.E380*
BLCA	TCGA-GU-A42R-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46751604	46751604	Nonsense_Mutation	C	A	p.E309*
BLCA	TCGA-GU-A762-01	SND1	ENST00000484767.1	chr7	127544799:127544872:127569240:127569382:127630999:127631008,127544799:127544872:127569240:127569382:127714553:127714674,	127569241	127569382	127569277	127569277	Nonsense_Mutation	C	T	p.Q522*
BLCA	TCGA-GU-A762-01	KMT2D	ENST00000547610.1	chr12	49448310:49448534:49448682:49448809:49449058:49449107,	49448683	49448809	49448705	49448705	Nonsense_Mutation	G	A	p.Q52*
BLCA	TCGA-GU-A762-01	RAP1GDS1	ENST00000408927.3,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000408900.3	chr4	99313102:99313231:99325627:99325753:99337895:99338039,	99325628	99325753	99325666	99325666	Nonsense_Mutation	G	T	p.E226*
BLCA	TCGA-GU-A763-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135201796	135201796	Nonsense_Mutation	G	C	p.S1730*
BLCA	TCGA-GU-A763-01	CDK13	ENST00000484589.1,ENST00000181839.4,ENST00000340829.5	chr7	40041459:40041630:40085434:40085624:40087419:40087476,	40085435	40085624	40085528	40085528	Nonsense_Mutation	C	A	p.S816*
BLCA	TCGA-GU-A764-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073481	33073481	Nonsense_Mutation	G	A	p.Q202*
BLCA	TCGA-GU-A764-01	ACOT8	ENST00000487205.1	chr20	44470403:44470595:44472901:44473059:44477088:44477314,	44472902	44473059	44472959	44472959	Nonsense_Mutation	G	A	p.Q197*
BLCA	TCGA-GU-A766-01	KMT2A	ENST00000389506.5,ENST00000354520.4	chr11	118307476:118307659:118339489:118339559:118342376:118345030,	118339490	118339559	118339535	118339535	Nonsense_Mutation	C	T	p.R160*
BLCA	TCGA-GU-A766-01	MED25	ENST00000312865.6	chr19	50333078:50333205:50333344:50333475:50333767:50333855,	50333345	50333475	50333414	50333414	Nonsense_Mutation	C	G	p.S253*
BLCA	TCGA-GU-A766-01	MUSK	ENST00000416899.2	chr9	113537626:113538243:113547094:113547296:113547806:113547998,	113547095	113547296	113547282	113547282	Nonsense_Mutation	G	A	p.W516*
BLCA	TCGA-GU-A766-01	DSP	ENST00000418664.2,ENST00000379802.3	chr6	7558348:7558497:7559458:7559633:7562884:7563013,	7559459	7559633	7559514	7559514	Nonsense_Mutation	C	T	p.R160*
BLCA	TCGA-GU-A767-01	DOK3	ENST00000377112.4	chr5	176932051:176932111:176936475:176936658:176937260:176937383,	176936476	176936658	176936500	176936500	Nonsense_Mutation	G	T	p.Y14*
BLCA	TCGA-GU-A767-01	KLRG1	ENST00000544226.1	chr12	9102720:9102832:9144801:9144906:9161570:9161671,	9144802	9144906	9144893	9144893	Nonsense_Mutation	G	A	p.W58*
BLCA	TCGA-GU-A767-01	HPS1	ENST00000338546.5,ENST00000361490.4,ENST00000325103.6,ENST00000467246.1	chr10	100193739:100193848:100195028:100195171:100195391:100195529,	100195029	100195171	100195123	100195123	Nonsense_Mutation	C	A	p.E102*
BLCA	TCGA-GU-A767-01	SVOPL	ENST00000436657.1	chr7	138333756:138333882:138341192:138341256:138347818:138347890,	138341193	138341256	138341220	138341220	Nonsense_Mutation	G	T	p.Y169*
BLCA	TCGA-GU-A767-01	ATE1	ENST00000423243.1,ENST00000540606.1,ENST00000224652.6,ENST00000535655.1,ENST00000369043.3,ENST00000543447.1,ENST00000369040.3	chr10	123549683:123549804:123596232:123596332:123600596:123600778,	123596233	123596332	123596255	123596255	Nonsense_Mutation	G	C	p.S412*
BLCA	TCGA-GU-A767-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000539828.2,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68208276:68208417:68215377:68215433:68217142:68217269,	68215378	68215433	68215389	68215389	Nonsense_Mutation	C	T	p.Q643*
BLCA	TCGA-GU-A767-01	KMT2D	ENST00000301067.7	chr12	49416372:49416658:49418360:49418491:49418592:49418729,	49418361	49418491	49418470	49418470	Nonsense_Mutation	G	A	p.Q5315*
BLCA	TCGA-GU-AATO-01	DSCC1	ENST00000313655.4	chr8	120855848:120855987:120859229:120859320:120862621:120862756,	120859230	120859320	120859263	120859263	Nonsense_Mutation	G	A	p.Q182*
BLCA	TCGA-GU-AATP-01	BAK1	ENST00000442998.2,ENST00000374467.3,ENST00000360661.5	chr6	33543074:33543218:33543569:33543705:33545311:33545412,	33543570	33543705	33543646	33543646	Nonsense_Mutation	G	A	p.Q44*
BLCA	TCGA-GU-AATP-01	EFTUD2	ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000590367.1,ENST00000426333.2,ENST00000586276.1	chr17	42929776:42929930:42930663:42930758:42930884:42931003,	42930664	42930758	42930716	42930716	Nonsense_Mutation	G	A	p.Q837*
BLCA	TCGA-GU-AATP-01	NIPA2	ENST00000398013.3,ENST00000337451.3,ENST00000398014.2	chr15	23014442:23014528:23019799:23019856:23021197:23021359,	23019800	23019856	23019802	23019802	Nonsense_Mutation	G	C	p.S65*
BLCA	TCGA-GU-AATP-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542921	187542921	Nonsense_Mutation	C	A	p.G1607*
BLCA	TCGA-GU-AATP-01	HMOX2	ENST00000414777.1,ENST00000406590.2,ENST00000575120.1,ENST00000570646.1,ENST00000575051.1,ENST00000458134.3,ENST00000219700.6,ENST00000398595.3	chr16	4556895:4557013:4557713:4558205:4559412:4559431,	4557714	4558205	4557745	4557745	Nonsense_Mutation	C	G	p.S79*
BLCA	TCGA-GU-AATP-01	DRC1	ENST00000288710.2	chr2	26667089:26667224:26667583:26667816:26671558:26671671,	26667584	26667816	26667762	26667762	Nonsense_Mutation	C	T	p.Q448*
BLCA	TCGA-GU-AATQ-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000504021.1,ENST00000515783.1,ENST00000440957.2,ENST00000348417.2,ENST00000349441.2	chr3	129195505:129195644:129196858:129197061:129198627:129198760,	129196859	129197061	129196909	129196909	Nonsense_Mutation	C	T	p.R451*
BLCA	TCGA-GU-AATQ-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229623212:229623360:229625701:229625849:229631241:229631312,	229625702	229625849	229625748	229625748	Nonsense_Mutation	G	C	p.S383*
BLCA	TCGA-GU-AATQ-01	PKNOX2	ENST00000298282.9,ENST00000558705.1	chr11	125221179:125221288:125237741:125237881:125255446:125255514,	125237742	125237881	125237800	125237800	Nonsense_Mutation	C	G	p.S49*
BLCA	TCGA-GU-AATQ-01	ESRRG	ENST00000391890.3,ENST00000366937.1	chr1	216692493:216692763:216737560:216737743:216741329:216741440,	216737561	216737743	216737707	216737707	Nonsense_Mutation	G	C	p.S223*
BLCA	TCGA-GU-AATQ-01	ESRRG	ENST00000366938.2,ENST00000359162.2,ENST00000366940.2,ENST00000493748.1,ENST00000360012.3,ENST00000361395.2,ENST00000361525.3,ENST00000408911.3,ENST00000475275.1,ENST00000463665.1,ENST00000487276.1,ENST00000493603.1	chr1	216692493:216692763:216737560:216737722:216741329:216741440,	216737561	216737722	216737707	216737707	Nonsense_Mutation	G	C	p.S223*
BLCA	TCGA-GU-AATQ-01	PACSIN2	ENST00000337959.4,ENST00000402229.1,ENST00000263246.3,ENST00000407585.1,ENST00000403744.3	chr22	43284648:43284804:43286952:43287188:43289462:43289619,	43286953	43287188	43287141	43287141	Nonsense_Mutation	C	A	p.E89*
BLCA	TCGA-GV-A3JV-01	FAM135A	ENST00000505769.1	chr6	71233669:71233824:71234633:71234894:71235566:71236401,	71234634	71234894	71234834	71234834	Nonsense_Mutation	C	T	p.R683*
BLCA	TCGA-GV-A3JV-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71234834	71234834	Nonsense_Mutation	C	T	p.R683*
BLCA	TCGA-GV-A3JV-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71234834	71234834	Nonsense_Mutation	C	T	p.R683*
BLCA	TCGA-GV-A3JW-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48232051:48232186:48234186:48234390:48237138:48237211,	48234187	48234390	48234387	48234387	Nonsense_Mutation	C	A	p.G628*
BLCA	TCGA-GV-A3JX-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150925437	150925437	Nonsense_Mutation	C	A	p.E1751*
BLCA	TCGA-GV-A3JX-01	NSMAF	ENST00000519858.1,ENST00000038176.3,ENST00000427130.2	chr8	59520327:59520399:59522162:59522292:59535778:59535831,	59522163	59522292	59522183	59522183	Nonsense_Mutation	G	A	p.Q223*
BLCA	TCGA-GV-A3JX-01	PBX3	ENST00000373487.4,ENST00000373489.5,ENST00000491787.3,ENST00000342287.5,ENST00000447726.2	chr9	128510828:128510902:128677964:128678206:128691933:128692124,	128677965	128678206	128677988	128677988	Nonsense_Mutation	G	T	p.E100*
BLCA	TCGA-GV-A3JX-01	MMAB	ENST00000544051.1,ENST00000541763.2,ENST00000542390.1,ENST00000537496.1,ENST00000420167.2,ENST00000545712.2	chr12	109999640:109999657:110002923:110002981:110006574:110006668,	110002924	110002981	110002929	110002929	Nonsense_Mutation	G	A	p.Q115*
BLCA	TCGA-GV-A3JX-01	EPRS	ENST00000366923.3,ENST00000609181.1,ENST00000464052.1	chr1	220170517:220170684:220174479:220174597:220178589:220178702,	220174480	220174597	220174523	220174523	Nonsense_Mutation	G	T	p.S713*
BLCA	TCGA-GV-A3JX-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820785	3820785	Nonsense_Mutation	G	C	p.S889*
BLCA	TCGA-GV-A3JZ-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4876469:4876548:4876879:4877064:4877679:4877795,	4876880	4877064	4876991	4876991	Nonsense_Mutation	C	T	p.W696*
BLCA	TCGA-GV-A3JZ-01	GIPR	ENST00000304207.8,ENST00000263281.3,ENST00000585889.1,ENST00000590918.1	chr19	46177331:46177435:46177939:46178084:46180206:46180366,	46177940	46178084	46178078	46178078	Nonsense_Mutation	G	A	p.W209*
BLCA	TCGA-GV-A3JZ-01	LIPG	ENST00000577628.1,ENST00000580036.1,ENST00000261292.4	chr18	47095806:47095918:47101738:47101960:47107784:47108027,	47101739	47101960	47101864	47101864	Nonsense_Mutation	C	T	p.Q233*
BLCA	TCGA-GV-A3JZ-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34759012:34759191:34805906:34806087:34985245:34985347,	34805907	34806087	34805961	34805961	Nonsense_Mutation	G	A	p.Q117*
BLCA	TCGA-GV-A3JZ-01	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25982350:25982514:25990451:25990595:25991610:25991737,	25990452	25990595	25990551	25990551	Nonsense_Mutation	G	A	p.Q226*
BLCA	TCGA-GV-A3JZ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
BLCA	TCGA-GV-A3JZ-01	WAC	ENST00000347934.4	chr10	28884855:28884970:28897114:28897360:28899627:28899639,28879650:28879761:28897114:28897360:28899627:28899639,	28897115	28897360	28897142	28897142	Nonsense_Mutation	C	G	p.S271*
BLCA	TCGA-GV-A3JZ-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105412337:105412432:105420937:105421303:105422831:105423017,	105420938	105421303	105421029	105421029	Nonsense_Mutation	G	C	p.S623*
BLCA	TCGA-GV-A3JZ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560834	32560834	Nonsense_Mutation	C	G	p.S320*
BLCA	TCGA-GV-A3QF-01	RASGRP2	ENST00000377497.3,ENST00000421556.1,ENST00000354024.3,ENST00000394432.3	chr11	64494382:64494603:64494767:64494832:64496334:64496514,	64494768	64494832	64494818	64494818	Nonsense_Mutation	C	A	p.E597*
BLCA	TCGA-GV-A3QF-01	RASGRP2	ENST00000464324.1,ENST00000377494.1	chr11	64494382:64494603:64494767:64494835:64496334:64496514,	64494768	64494835	64494818	64494818	Nonsense_Mutation	C	A	p.E597*
BLCA	TCGA-GV-A3QG-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814730	214814730	Nonsense_Mutation	C	T	p.Q1017*
BLCA	TCGA-GV-A3QH-01	DENND4A	ENST00000443035.3,ENST00000568515.1,ENST00000564674.1,ENST00000431932.2	chr15	66010115:66010334:66015185:66015286:66021409:66021585,	66015186	66015286	66015201	66015201	Nonsense_Mutation	G	A	p.Q525*
BLCA	TCGA-GV-A3QH-01	CSNK1G3	ENST00000345990.4,ENST00000395411.1	chr5	122847953:122848264:122881110:122881535:122888800:122888841,	122881111	122881535	122881389	122881389	Nonsense_Mutation	C	G	p.S11*
BLCA	TCGA-GV-A3QH-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33356266:33356389:33364095:33364251:33369923:33370204,	33364096	33364251	33364214	33364214	Nonsense_Mutation	C	T	p.W91*
BLCA	TCGA-GV-A3QH-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268537	1268537	Nonsense_Mutation	C	A	p.S3479*
BLCA	TCGA-GV-A3QI-01	DKK3	ENST00000528188.1,ENST00000326932.4,ENST00000396505.2,ENST00000450094.2	chr11	11986161:11986233:11987355:11987512:11988500:11988645,	11987356	11987512	11987391	11987391	Nonsense_Mutation	G	T	p.C265*
BLCA	TCGA-GV-A3QI-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000454583.2,ENST00000243326.5,ENST00000453091.2	chr2	152326224:152326378:152330477:152330586:152331370:152331733,	152330478	152330586	152330584	152330584	Nonsense_Mutation	C	G	p.S2401*
BLCA	TCGA-GV-A3QI-01	CD200	ENST00000473539.1	chr3	112052024:112052071:112059748:112059830:112063808:112063922,112054789:112054864:112059748:112059830:112063808:112063922,	112059749	112059830	112059796	112059796	Nonsense_Mutation	G	A	p.W20*
BLCA	TCGA-GV-A3QI-01	PAQR5	ENST00000340965.3,ENST00000558684.1,ENST00000395407.2,ENST00000561153.1	chr15	69672221:69672349:69677015:69677221:69681992:69682082,	69677016	69677221	69677081	69677081	Nonsense_Mutation	G	A	p.W82*
BLCA	TCGA-GV-A3QI-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800781	39800781	Nonsense_Mutation	G	T	p.E2841*
BLCA	TCGA-GV-A3QI-01	PHF20L1	ENST00000315808.10,ENST00000395379.1,ENST00000395386.2	chr8	133806978:133807063:133811017:133811106:133811328:133811418,133806978:133807063:133811017:133811106:133811340:133811418,	133811018	133811106	133811032	133811032	Nonsense_Mutation	C	T	p.Q119*
BLCA	TCGA-GV-A3QI-01	RRAGB	ENST00000414239.1,ENST00000262850.7,ENST00000374941.4	chrX	55757833:55758019:55777533:55777629:55779824:55779908,	55777534	55777629	55777615	55777615	Nonsense_Mutation	G	T	p.E200*
BLCA	TCGA-GV-A3QK-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	470423:470525:472897:473008:476362:476446,	472898	473008	472991	472991	Nonsense_Mutation	C	T	p.W176*
BLCA	TCGA-GV-A3QK-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000314490.11	chr2	121684936:121685042:121708818:121709021:121712820:121713006,	121708819	121709021	121708927	121708927	Nonsense_Mutation	C	G	p.Y121*
BLCA	TCGA-GV-A3QK-01	SLCO5A1	ENST00000260126.4,ENST00000526750.1,ENST00000530307.1	chr8	70584897:70585561:70588843:70588908:70591612:70591854,	70588844	70588908	70588853	70588853	Nonsense_Mutation	G	A	p.R694*
BLCA	TCGA-GV-A40E-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717615	89717615	Nonsense_Mutation	C	T	p.Q214*
BLCA	TCGA-GV-A40E-01	EYA3	ENST00000373863.3,ENST00000540618.1	chr1	28343664:28343750:28362054:28362191:28365349:28365416,	28362055	28362191	28362171	28362171	Nonsense_Mutation	G	C	p.S82*
BLCA	TCGA-GV-A40G-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755948:74756062:74756258:74756409:74756488:74756626,	74756259	74756409	74756363	74756363	Nonsense_Mutation	G	A	p.Q79*
BLCA	TCGA-GV-A40G-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74756363	74756363	Nonsense_Mutation	G	A	p.Q79*
BLCA	TCGA-GV-A40G-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442532	95442532	Nonsense_Mutation	G	A	p.W83*
BLCA	TCGA-GV-A6ZA-01	PIP5K1A	ENST00000368888.4,ENST00000461816.1,ENST00000418435.1	chr1	151196723:151196755:151196846:151196882:151199795:151199837,	151196847	151196882	151196878	151196878	Nonsense_Mutation	C	G	p.S51*
BLCA	TCGA-GV-A6ZA-01	TIMELESS	ENST00000553532.1,ENST00000554616.1	chr12	56826152:56826308:56826809:56826911:56827164:56827227,	56826810	56826911	56826818	56826818	Nonsense_Mutation	G	A	p.Q175*
BLCA	TCGA-GV-A6ZA-01	CNGB1	ENST00000564448.1,ENST00000251102.8	chr16	57957016:57957284:57965619:57965782:57973333:57973453,	57965620	57965782	57965711	57965711	Nonsense_Mutation	C	A	p.E476*
BLCA	TCGA-GV-A6ZA-01	ADAM17	ENST00000310823.3	chr2	9661331:9661445:9663377:9663467:9666239:9666373,	9663378	9663467	9663424	9663424	Nonsense_Mutation	G	C	p.S266*
BLCA	TCGA-GV-A6ZA-01	CST3	ENST00000398411.1	chr20	23608533:23610102:23614550:23614636:23615890:23615963,	23614551	23614636	23614618	23614618	Nonsense_Mutation	G	A	p.Q126*
BLCA	TCGA-GV-A6ZA-01	CCDC30	ENST00000342022.4,ENST00000340612.4,ENST00000428554.2	chr1	43002243:43002272:43004843:43004981:43011080:43011250,	43004844	43004981	43004857	43004857	Nonsense_Mutation	C	G	p.S44*
BLCA	TCGA-GV-A6ZA-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6,ENST00000494025.1,ENST00000476689.1	chr2	84800590:84800711:84804380:84804532:84806650:84806803,	84804381	84804532	84804494	84804494	Nonsense_Mutation	A	T	p.R680*
BLCA	TCGA-GV-A6ZA-01	STRAP	ENST00000538352.1,ENST00000419869.2,ENST00000541731.1,ENST00000025399.6	chr12	16046980:16047077:16048292:16048430:16050815:16050952,	16048293	16048430	16048298	16048298	Nonsense_Mutation	G	A	p.W169*
BLCA	TCGA-GV-A6ZA-01	TTC37	ENST00000513823.1,ENST00000358746.2	chr5	94877558:94877610:94878887:94879031:94882764:94882855,	94878888	94879031	94878950	94878950	Nonsense_Mutation	G	A	p.Q58*
BLCA	TCGA-GV-A6ZA-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198032	20198032	Nonsense_Mutation	G	C	p.S651*
BLCA	TCGA-GV-A6ZA-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58621248:58621317:58621683:58621782:58622702:58622810,	58621684	58621782	58621779	58621779	Nonsense_Mutation	G	A	p.Q72*
BLCA	TCGA-GV-A6ZA-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72891240	72891240	Nonsense_Mutation	G	A	p.Q851*
BLCA	TCGA-H4-A2HO-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16024365:16024583:16029395:16029520:16040624:16040726,	16029396	16029520	16029478	16029478	Nonsense_Mutation	C	A	p.E518*
BLCA	TCGA-H4-A2HQ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087478	109087478	Nonsense_Mutation	C	T	p.Q565*
BLCA	TCGA-H4-A2HQ-01	LRRC6	ENST00000518642.1,ENST00000250173.1,ENST00000519595.1	chr8	133637557:133637700:133644985:133645209:133650180:133650353,	133644986	133645209	133645151	133645151	Nonsense_Mutation	G	T	p.S163*
BLCA	TCGA-H4-A2HQ-01	AGO4	ENST00000373210.3	chr1	36297657:36297786:36298037:36298171:36299590:36299775,	36298038	36298171	36298149	36298149	Nonsense_Mutation	C	T	p.Q453*
BLCA	TCGA-H4-A2HQ-01	TMEM248	ENST00000433271.2,ENST00000341567.4	chr7	66406834:66407011:66409962:66410248:66413530:66413681,	66409963	66410248	66409968	66409968	Nonsense_Mutation	G	A	p.W55*
BLCA	TCGA-H4-A2HQ-01	NEK11	ENST00000507910.1,ENST00000602792.1,ENST00000510688.1,ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000383366.4,ENST00000508196.1,ENST00000356918.4,ENST00000506695.1,ENST00000511262.1	chr3	130799266:130799432:130828646:130828765:130851588:130851653,	130828647	130828765	130828671	130828671	Nonsense_Mutation	C	T	p.Q121*
BLCA	TCGA-H4-A2HQ-01	MPZ	ENST00000491222.2,ENST00000336559.4,ENST00000533357.1,ENST00000360451.6,ENST00000463290.1	chr1	161276118:161276254:161276497:161276711:161277047:161277214,	161276498	161276711	161276626	161276626	Nonsense_Mutation	C	T	p.W107*
BLCA	TCGA-H4-A2HQ-01	CD34	ENST00000310833.7,ENST00000356522.4	chr1	208070837:208070918:208072317:208072571:208073165:208073348,	208072318	208072571	208072532	208072532	Nonsense_Mutation	G	C	p.S101*
BLCA	TCGA-H4-A2HQ-01	ZFP28	ENST00000589836.1,ENST00000591844.1,ENST00000301318.3	chr19	57050993:57051085:57058876:57059003:57059175:57059271,	57058877	57059003	57058946	57058946	Nonsense_Mutation	C	T	p.Q124*
BLCA	TCGA-H4-A2HQ-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47884595:47884745:47887189:47887342:47887654:47887894,	47887190	47887342	47887268	47887268	Nonsense_Mutation	G	T	p.E301*
BLCA	TCGA-HQ-A2OE-01	GLS2	ENST00000479952.1,ENST00000486433.1,ENST00000424141.2,ENST00000311966.4	chr12	56865556:56865620:56865902:56865979:56866473:56866535,	56865903	56865979	56865968	56865968	Nonsense_Mutation	G	C	p.S508*
BLCA	TCGA-HQ-A2OE-01	PRTG	ENST00000389286.4	chr15	55916539:55916705:55919205:55919326:55921019:55921202,	55919206	55919326	55919293	55919293	Nonsense_Mutation	G	C	p.S947*
BLCA	TCGA-HQ-A2OE-01	MYLK	ENST00000464489.1,ENST00000508240.1,ENST00000354792.5,ENST00000360304.3,ENST00000346322.5,ENST00000359169.1,ENST00000475616.1,ENST00000360772.3	chr3	123375991:123376275:123382951:123383105:123385065:123385193,	123382952	123383105	123383093	123383093	Nonsense_Mutation	C	A	p.E1282*
BLCA	TCGA-HQ-A2OE-01	RGL3	ENST00000563726.1	chr19	11517499:11517540:11526612:11526824:11527287:11527336,11521928:11522120:11526612:11526824:11527287:11527336,	11526613	11526824	11526625	11526625	Nonsense_Mutation	G	A	p.Q209*
BLCA	TCGA-HQ-A2OE-01	RGL3	ENST00000562663.1	chr19	11517499:11517540:11526622:11526824:11527287:11527336,	11526623	11526824	11526625	11526625	Nonsense_Mutation	G	A	p.Q209*
BLCA	TCGA-HQ-A2OF-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000381414.4	chr16	19481002:19481147:19483409:19483565:19485446:19485556,	19483410	19483565	19483526	19483526	Nonsense_Mutation	C	A	p.C633*
BLCA	TCGA-HQ-A5ND-01	ATG4C	ENST00000317868.4,ENST00000371120.3,ENST00000443289.1,ENST00000371118.1	chr1	63270842:63270926:63282245:63282479:63284675:63284736,	63282246	63282479	63282349	63282349	Nonsense_Mutation	G	A	p.W88*
BLCA	TCGA-HQ-A5ND-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3	chr5	50084356:50084423:50090040:50090166:50090686:50091251,	50090041	50090166	50090120	50090120	Nonsense_Mutation	G	T	p.E273*
BLCA	TCGA-HQ-A5ND-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829005	72829005	Nonsense_Mutation	G	A	p.Q2526*
BLCA	TCGA-HQ-A5NE-01	GCKR	ENST00000424318.2,ENST00000264717.2	chr2	27741654:27741804:27745326:27745461:27746135:27746551,	27745327	27745461	27745372	27745372	Nonsense_Mutation	C	T	p.R540*
BLCA	TCGA-HQ-A5NE-01	ARHGAP9	ENST00000430041.2,ENST00000550440.1,ENST00000356411.2,ENST00000393791.3,ENST00000546200.1,ENST00000550130.1,ENST00000552953.1,ENST00000393797.2	chr12	57866458:57866471:57867385:57867491:57867824:57867956,	57867386	57867491	57867440	57867440	Nonsense_Mutation	G	C	p.S747*
BLCA	TCGA-HQ-A5NE-01	ARHGAP9	ENST00000550288.1	chr12	57866458:57866471:57867385:57867474:57867824:57867956,	57867386	57867474	57867440	57867440	Nonsense_Mutation	G	C	p.S747*
BLCA	TCGA-HQ-A5NE-01	HDLBP	ENST00000453141.1	chr2	242194556:242194573:242194788:242194926:242195598:242195814,	242194789	242194926	242194815	242194815	Nonsense_Mutation	G	A	p.Q352*
BLCA	TCGA-HQ-A5NE-01	HDLBP	ENST00000391975.1,ENST00000391976.2,ENST00000310931.4	chr2	242194556:242194573:242194788:242194995:242195598:242195814,	242194789	242194995	242194815	242194815	Nonsense_Mutation	G	A	p.Q352*
BLCA	TCGA-HQ-A5NE-01	DNM2	ENST00000408974.4,ENST00000359692.6	chr19	10912963:10913034:10916591:10916643:10922939:10922976,	10916592	10916643	10916641	10916641	Nonsense_Mutation	C	T	p.Q515*
BLCA	TCGA-HQ-A5NE-01	SCAP	ENST00000265565.5	chr3	47458611:47458697:47458793:47459316:47459623:47459739,	47458794	47459316	47459101	47459101	Nonsense_Mutation	G	C	p.S888*
BLCA	TCGA-HQ-A5NE-01	SCAP	ENST00000320017.6,ENST00000441517.2,ENST00000545718.1	chr3	47458611:47458697:47458793:47459313:47459623:47459739,	47458794	47459313	47459101	47459101	Nonsense_Mutation	G	C	p.S888*
BLCA	TCGA-HQ-A5NE-01	COL25A1	ENST00000399127.1	chr4	109780811:109780889:109782082:109782127:109784474:109784543,	109782083	109782127	109782094	109782094	Nonsense_Mutation	G	A	p.Q411*
BLCA	TCGA-HQ-A5NE-01	MAP4	ENST00000439356.1,ENST00000360240.6,ENST00000395734.3	chr3	48019354:48019423:48040127:48040369:48130262:48130314,	48040128	48040369	48040148	48040148	Nonsense_Mutation	G	C	p.S68*
BLCA	TCGA-HQ-A5NE-01	TRAF3IP2	ENST00000532708.1,ENST00000392556.4,ENST00000340026.6	chr6	111901399:111901592:111912460:111913297:111926978:111927073,111901399:111901592:111912460:111913297:111922398:111922509,	111912461	111913297	111912578	111912578	Nonsense_Mutation	G	A	p.Q238*
BLCA	TCGA-HQ-A5NE-01	PPP4R1	ENST00000581250.1,ENST00000400556.3	chr18	9593765:9593872:9595015:9595151:9614223:9614268,	9595016	9595151	9595103	9595103	Nonsense_Mutation	G	C	p.S34*
BLCA	TCGA-K4-A3WS-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735736	4735736	Nonsense_Mutation	G	A	p.Q778*
BLCA	TCGA-K4-A3WS-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641207	36641207	Nonsense_Mutation	C	A	p.G338*
BLCA	TCGA-K4-A3WS-01	CHIT1	ENST00000255427.3,ENST00000484834.1,ENST00000367229.1,ENST00000535569.1,ENST00000503786.1,ENST00000491855.1	chr1	203188409:203188457:203188791:203188977:203191329:203191438,	203188792	203188977	203188877	203188877	Nonsense_Mutation	G	T	p.S277*
BLCA	TCGA-K4-A3WS-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19339266	19339266	Nonsense_Mutation	C	G	p.S946*
BLCA	TCGA-K4-A3WS-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128605180:128605303:128614677:128614791:128615051:128615162,	128614678	128614791	128614761	128614761	Nonsense_Mutation	G	A	p.Q787*
BLCA	TCGA-K4-A3WS-01	TP53BP2	ENST00000496282.1,ENST00000343537.7,ENST00000494100.1,ENST00000391878.2	chr1	223991936:223992050:223994547:223994649:223998132:223998215,	223994548	223994649	223994610	223994610	Nonsense_Mutation	G	A	p.Q9*
BLCA	TCGA-K4-A3WU-01	ARAP3	ENST00000513878.1,ENST00000239440.4	chr5	141050078:141050195:141050831:141050967:141051136:141051319,	141050832	141050967	141050834	141050834	Nonsense_Mutation	G	C	p.S663*
BLCA	TCGA-K4-A3WU-01	KIAA0895L	ENST00000290881.7,ENST00000569349.1,ENST00000563902.1,ENST00000561621.1,ENST00000568563.1	chr16	67212347:67212407:67213332:67213465:67213717:67213857,	67213333	67213465	67213339	67213339	Nonsense_Mutation	C	A	p.E281*
BLCA	TCGA-K4-A3WU-01	KIAA0895L	ENST00000570009.1	chr16	67212347:67212407:67213304:67213465:67213717:67213857,	67213305	67213465	67213339	67213339	Nonsense_Mutation	C	A	p.E281*
BLCA	TCGA-K4-A3WU-01	PLIN2	ENST00000276914.2	chr9	19118318:19118453:19119647:19119829:19120877:19121163,	19119648	19119829	19119764	19119764	Nonsense_Mutation	C	A	p.G221*
BLCA	TCGA-K4-A4AB-01	SLTM	ENST00000249736.7,ENST00000536328.1,ENST00000559880.1,ENST00000380516.2,ENST00000557950.1,ENST00000557924.1,ENST00000558756.1	chr15	59204761:59204809:59205697:59205895:59209133:59209198,	59205698	59205895	59205829	59205829	Nonsense_Mutation	C	A	p.E128*
BLCA	TCGA-K4-A4AC-01	MPI	ENST00000323744.6,ENST00000352410.4,ENST00000535694.1,ENST00000563786.1	chr15	75188492:75188666:75189351:75189560:75189852:75190176,	75189352	75189560	75189514	75189514	Nonsense_Mutation	C	G	p.S336*
BLCA	TCGA-K4-A4AC-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45918930:45919018:45920539:45920632:45923409:45923523,	45920540	45920632	45920581	45920581	Nonsense_Mutation	C	A	p.E187*
BLCA	TCGA-K4-A4AC-01	IL1RAP	ENST00000342550.2,ENST00000422485.1,ENST00000443369.2,ENST00000439062.1,ENST00000422940.1,ENST00000072516.3,ENST00000447382.1,ENST00000413869.1,ENST00000317757.3,ENST00000412504.2	chr3	190321916:190322202:190326783:190326970:190338063:190338229,	190326784	190326970	190326899	190326899	Nonsense_Mutation	C	T	p.Q156*
BLCA	TCGA-K4-A54R-01	PLXDC2	ENST00000377238.2,ENST00000377242.3,ENST00000377252.4	chr10	20507992:20508031:20534273:20534434:20568631:20568913,	20534274	20534434	20534409	20534409	Nonsense_Mutation	C	G	p.S483*
BLCA	TCGA-K4-A54R-01	EIF3F	ENST00000528653.1	chr11	8008902:8009263:8013327:8013518:8013630:8013710,	8013328	8013518	8013370	8013370	Nonsense_Mutation	C	A	p.S136*
BLCA	TCGA-K4-A54R-01	EIF3F	ENST00000537635.1,ENST00000309828.4,ENST00000533626.1	chr11	8008902:8009263:8013327:8013398:8013630:8013710,	8013328	8013398	8013370	8013370	Nonsense_Mutation	C	A	p.S136*
BLCA	TCGA-K4-A54R-01	PRRT1	ENST00000211413.5	chr6	32117313:32117499:32118144:32118683:32119585:32119676,	32118145	32118683	32118633	32118633	Nonsense_Mutation	G	A	p.Q24*
BLCA	TCGA-K4-A54R-01	MBD1	ENST00000591416.1,ENST00000424334.2,ENST00000398495.2,ENST00000457839.2,ENST00000590208.1,ENST00000398493.1,ENST00000585595.1,ENST00000353909.3,ENST00000347968.3,ENST00000585672.1,ENST00000269468.5,ENST00000382948.5	chr18	47799217:47799325:47799703:47799841:47799933:47799985,	47799704	47799841	47799761	47799761	Nonsense_Mutation	C	T	p.W509*
BLCA	TCGA-K4-A54R-01	MBD1	ENST00000589541.1	chr18	47799217:47799325:47799703:47799796:47799933:47799985,	47799704	47799796	47799761	47799761	Nonsense_Mutation	C	T	p.W509*
BLCA	TCGA-K4-A54R-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103117	168103117	Nonsense_Mutation	G	T	p.E1739*
BLCA	TCGA-K4-A54R-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641452	36641452	Nonsense_Mutation	G	C	p.S256*
BLCA	TCGA-K4-A54R-01	S100PBP	ENST00000373476.1,ENST00000373475.5	chr1	33293596:33293682:33295564:33295668:33318679:33318767,	33295565	33295668	33295665	33295665	Nonsense_Mutation	C	T	p.Q341*
BLCA	TCGA-K4-A54R-01	COMMD9	ENST00000532705.1	chr11	36296082:36296322:36297686:36297790:36298638:36298673,36296022:36296322:36297686:36297790:36300026:36300166,	36297687	36297790	36297690	36297690	Nonsense_Mutation	C	A	p.E140*
BLCA	TCGA-K4-A54R-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094386	27094386	Nonsense_Mutation	G	T	p.E1032*
BLCA	TCGA-K4-A54R-01	GLCCI1	ENST00000489405.1,ENST00000470583.1	chr7	8043537:8043689:8062112:8062199:8095065:8095179,	8062113	8062199	8062158	8062158	Nonsense_Mutation	C	T	p.Q219*
BLCA	TCGA-K4-A54R-01	HEATR1	ENST00000366582.3	chr1	236737501:236737633:236737960:236738203:236739518:236739677,	236737961	236738203	236737981	236737981	Nonsense_Mutation	G	A	p.Q1103*
BLCA	TCGA-K4-A54R-01	AVIL	ENST00000257861.3,ENST00000548843.1,ENST00000537081.1,ENST00000549851.1	chr12	58203594:58203673:58204131:58204334:58204598:58204709,	58204132	58204334	58204310	58204310	Nonsense_Mutation	G	A	p.R188*
BLCA	TCGA-K4-A54R-01	SSBP2	ENST00000507655.1,ENST00000505980.1,ENST00000504174.1,ENST00000320672.4,ENST00000512098.1,ENST00000509013.2	chr5	80809476:80809536:80911291:80911376:80932375:80932437,	80911292	80911376	80911320	80911320	Nonsense_Mutation	G	T	p.S85*
BLCA	TCGA-K4-A54R-01	ZDHHC1	ENST00000348579.2,ENST00000565726.1	chr16	67429407:67429469:67432114:67432227:67432475:67432634,	67432115	67432227	67432117	67432117	Nonsense_Mutation	G	A	p.Q309*
BLCA	TCGA-K4-A54R-01	SEC62	ENST00000497277.1,ENST00000481435.1,ENST00000337002.4,ENST00000487736.1,ENST00000480708.1	chr3	169693395:169693504:169694733:169694839:169700494:169700645,	169694734	169694839	169694764	169694764	Nonsense_Mutation	C	G	p.S59*
BLCA	TCGA-K4-A54R-01	TRIOBP	ENST00000418339.1,ENST00000403663.2,ENST00000344404.6,ENST00000406386.3,ENST00000417857.1,ENST00000407319.2,ENST00000452519.1,ENST00000413051.2	chr22	38147778:38147835:38150883:38150991:38151107:38151197,	38150884	38150991	38150986	38150986	Nonsense_Mutation	G	T	p.E1828*
BLCA	TCGA-K4-A54R-01	RBBP7	ENST00000425696.1,ENST00000380084.4,ENST00000404022.1,ENST00000330735.3,ENST00000380087.2	chrX	16863150:16863226:16863950:16864061:16867366:16867424,	16863951	16864061	16864007	16864007	Nonsense_Mutation	C	A	p.E385*
BLCA	TCGA-K4-A54R-01	ZNF711	ENST00000542798.1,ENST00000360700.4	chrX	84522283:84522421:84523299:84523347:84525008:84525152,	84523300	84523347	84523329	84523329	Nonsense_Mutation	G	T	p.E362*
BLCA	TCGA-K4-A54R-01	APAF1	ENST00000552268.1,ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000333991.1,ENST00000551964.1,ENST00000357310.1	chr12	99043264:99043462:99052937:99053121:99056233:99056346,	99052938	99053121	99053033	99053033	Nonsense_Mutation	C	T	p.Q208*
BLCA	TCGA-K4-A54R-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13165994:13166110:13167417:13167567:13167945:13168039,	13167418	13167567	13167528	13167528	Nonsense_Mutation	C	G	p.S370*
BLCA	TCGA-K4-A54R-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037966	49037966	Nonsense_Mutation	C	T	p.Q736*
BLCA	TCGA-K4-A54R-01	AGAP3	ENST00000397238.2	chr7	150831568:150831655:150835229:150835400:150837065:150837203,	150835230	150835400	150835352	150835352	Nonsense_Mutation	C	T	p.Q540*
BLCA	TCGA-K4-A54R-01	UBA52	ENST00000596304.1,ENST00000598780.1,ENST00000430157.2,ENST00000442744.2,ENST00000594527.1,ENST00000599595.1,ENST00000596272.1,ENST00000595158.1,ENST00000596273.1,ENST00000595683.1,ENST00000597451.1,ENST00000599551.1	chr19	18684185:18684213:18684471:18684558:18685679:18685778,	18684472	18684558	18684538	18684538	Nonsense_Mutation	C	G	p.S57*
BLCA	TCGA-K4-A54R-01	AMDHD2	ENST00000568263.1,ENST00000302956.4,ENST00000413459.3,ENST00000293971.6	chr16	2577561:2577616:2577773:2577986:2578060:2578149,	2577774	2577986	2577863	2577863	Nonsense_Mutation	C	T	p.Q169*
BLCA	TCGA-K4-A5RH-01	SIMC1	ENST00000429602.2,ENST00000443967.1	chr5	175665509:175665640:175722032:175722265:175723253:175723323,175716656:175717958:175722032:175722265:175723253:175723323,	175722033	175722265	175722261	175722261	Nonsense_Mutation	C	T	p.Q535*
BLCA	TCGA-K4-A5RH-01	ODAM	ENST00000396094.2,ENST00000510847.1,ENST00000510709.2	chr4	71066213:71066318:71067170:71067218:71067974:71068046,	71067171	71067218	71067186	71067186	Nonsense_Mutation	C	T	p.Q182*
BLCA	TCGA-K4-A5RI-01	SLC7A6	ENST00000219343.6,ENST00000566454.1	chr16	68321662:68321774:68324298:68324443:68325111:68325235,	68324299	68324443	68324421	68324421	Nonsense_Mutation	G	T	p.E258*
BLCA	TCGA-K4-A5RI-01	TULP3	ENST00000538354.1,ENST00000397132.2,ENST00000448120.2	chr12	3031427:3031568:3039413:3039511:3040202:3040305,	3039414	3039511	3039495	3039495	Nonsense_Mutation	C	G	p.S159*
BLCA	TCGA-K4-A5RI-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60194249	60194249	Nonsense_Mutation	C	A	p.E385*
BLCA	TCGA-K4-A5RI-01	MED16	ENST00000592943.1,ENST00000312090.6,ENST00000395808.3,ENST00000325464.1,ENST00000589119.1,ENST00000269814.4,ENST00000606248.1	chr19	884902:885008:885769:886201:889637:889786,	885770	886201	886120	886120	Nonsense_Mutation	C	A	p.E177*
BLCA	TCGA-K4-A5RJ-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BLCA	TCGA-K4-A5RJ-01	RBL1	ENST00000344359.3	chr20	35696489:35696589:35717391:35717525:35724175:35724392,	35717392	35717525	35717441	35717441	Nonsense_Mutation	C	A	p.E81*
BLCA	TCGA-K4-A5RJ-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1,ENST00000523085.1	chr8	51306772:51306825:51314769:51314904:51351102:51351159,	51314770	51314904	51314787	51314787	Nonsense_Mutation	T	A	p.C15*
BLCA	TCGA-K4-A5RJ-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176526020	176526020	Nonsense_Mutation	C	T	p.Q188*
BLCA	TCGA-K4-A5RJ-01	PPM1G	ENST00000350803.4,ENST00000344034.4	chr2	27606818:27606959:27607539:27607955:27608613:27608746,	27607540	27607955	27607698	27607698	Nonsense_Mutation	C	A	p.E223*
BLCA	TCGA-K4-A5RJ-01	ABCC4	ENST00000376887.4,ENST00000431522.1,ENST00000536256.1	chr13	95815863:95815901:95816631:95816772:95818411:95818621,	95816632	95816772	95816712	95816712	Nonsense_Mutation	G	A	p.Q699*
BLCA	TCGA-K4-A6FZ-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000415140.2,ENST00000404816.2,ENST00000354476.3,ENST00000402934.1	chr2	33540210:33540336:33567904:33568030:33572433:33572476,	33567905	33568030	33568000	33568000	Nonsense_Mutation	C	T	p.Q1276*
BLCA	TCGA-K4-A6FZ-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138601955	138601955	Nonsense_Mutation	G	C	p.S806*
BLCA	TCGA-K4-A6MB-01	HSP90AA1	ENST00000216281.8,ENST00000334701.7	chr14	102551688:102551768:102552094:102552461:102552553:102552668,	102552095	102552461	102552188	102552188	Nonsense_Mutation	C	A	p.E268*
BLCA	TCGA-K4-A6MB-01	ZNF292	ENST00000369577.3	chr6	87928313:87928449:87943042:87943245:87953192:87953285,	87943043	87943245	87943114	87943114	Nonsense_Mutation	C	T	p.Q204*
BLCA	TCGA-K4-A6MB-01	PUS3	ENST00000227474.3,ENST00000530811.1	chr11	125763381:125764181:125765118:125765684:125765801:125766225,	125765119	125765684	125765330	125765330	Nonsense_Mutation	G	A	p.Q245*
BLCA	TCGA-K4-A6MB-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323899	59323899	Nonsense_Mutation	C	G	p.S293*
BLCA	TCGA-K4-A6MB-01	C10orf67	ENST00000323327.4	chr10	23611322:23611466:23621990:23622111:23633497:23633774,	23621991	23622111	23622056	23622056	Nonsense_Mutation	G	A	p.Q89*
BLCA	TCGA-K4-A6MB-01	SGPL1	ENST00000373202.3	chr10	72631593:72631743:72633107:72633346:72635158:72635305,	72633108	72633346	72633171	72633171	Nonsense_Mutation	C	T	p.Q375*
BLCA	TCGA-K4-A6MB-01	UBE2L3	ENST00000458578.2,ENST00000342192.4,ENST00000496722.1	chr22	21947149:21947245:21965145:21965332:21975803:21976541,	21965146	21965332	21965299	21965299	Nonsense_Mutation	G	T	p.E93*
BLCA	TCGA-K4-A6MB-01	NPHP3	ENST00000326682.8,ENST00000474871.1,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132407917:132408107:132409371:132409494:132410035:132410130,	132409372	132409494	132409476	132409476	Nonsense_Mutation	C	T	p.W863*
BLCA	TCGA-K4-A6MB-01	ARSG	ENST00000448504.2,ENST00000452479.2,ENST00000582154.1	chr17	66364688:66364885:66366584:66366665:66381204:66381313,	66366585	66366665	66366605	66366605	Nonsense_Mutation	C	T	p.Q308*
BLCA	TCGA-K4-A6MB-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75526811:75526928:75527594:75527765:75528567:75528664,	75527595	75527765	75527763	75527763	Nonsense_Mutation	C	T	p.Q727*
BLCA	TCGA-K4-A6MB-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75526811:75526928:75527594:75527765:75528567:75528664,	75527595	75527765	75527625	75527625	Nonsense_Mutation	C	T	p.Q681*
BLCA	TCGA-K4-A6MB-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574021	7574021	Nonsense_Mutation	C	A	p.E336*
BLCA	TCGA-K4-A6MB-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175293491:175293655:175299209:175299371:175304846:175304943,	175299210	175299371	175299342	175299342	Nonsense_Mutation	G	A	p.Q1221*
BLCA	TCGA-K4-A83P-01	XIRP2	ENST00000409728.1,ENST00000409756.2,ENST00000295237.9,ENST00000409273.1,ENST00000409195.1,ENST00000420519.1,ENST00000409605.1,ENST00000409043.1	chr2	168074675:168074810:168096364:168096475:168097173:168097246,	168096365	168096475	168096396	168096396	Nonsense_Mutation	C	G	p.S297*
BLCA	TCGA-K4-A83P-01	RAB3IP	ENST00000550847.1,ENST00000325555.9,ENST00000247833.7,ENST00000550536.1,ENST00000551641.1,ENST00000553099.1	chr12	70195388:70195501:70206557:70206657:70206743:70206813,	70206558	70206657	70206617	70206617	Nonsense_Mutation	C	G	p.S413*
BLCA	TCGA-K4-A83P-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056181	27056181	Nonsense_Mutation	C	T	p.Q393*
BLCA	TCGA-K4-A83P-01	DPAGT1	ENST00000432443.2,ENST00000481084.1,ENST00000354202.4,ENST00000409993.2,ENST00000392834.3,ENST00000524658.1	chr11	118968173:118968261:118968564:118968753:118969112:118969145,	118968565	118968753	118968638	118968638	Nonsense_Mutation	G	A	p.Q282*
BLCA	TCGA-K4-AAQO-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394072	64394072	Nonsense_Mutation	C	G	p.S150*
BLCA	TCGA-K4-AAQO-01	CAMSAP2	ENST00000236925.4,ENST00000413307.2	chr1	200708906:200709094:200729966:200730226:200776503:200776665,	200729967	200730226	200729987	200729987	Nonsense_Mutation	C	T	p.Q54*
BLCA	TCGA-K4-AAQO-01	CTNNBL1	ENST00000361383.6,ENST00000373469.1,ENST00000405275.2,ENST00000373473.1	chr20	36431268:36431450:36468503:36468601:36470740:36470821,	36468504	36468601	36468596	36468596	Nonsense_Mutation	G	T	p.E409*
BLCA	TCGA-K4-AAQO-01	WWC1	ENST00000521089.1,ENST00000265293.4,ENST00000393895.3	chr5	167826492:167826572:167833202:167833332:167835511:167835613,	167833203	167833332	167833249	167833249	Nonsense_Mutation	G	T	p.E213*
BLCA	TCGA-KQ-A41N-01	METTL14	ENST00000506780.1,ENST00000502564.1,ENST00000388822.5	chr4	119618336:119618478:119621704:119621797:119625089:119625206,	119621705	119621797	119621745	119621745	Nonsense_Mutation	C	G	p.S229*
BLCA	TCGA-KQ-A41N-01	OCIAD1	ENST00000512981.1,ENST00000505922.2,ENST00000503016.1,ENST00000512236.1,ENST00000444354.2,ENST00000511102.1,ENST00000510824.1,ENST00000508293.1,ENST00000506801.1,ENST00000396448.2,ENST00000425583.2,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000509246.1,ENST00000381473.3	chr4	48850415:48850463:48851963:48852099:48853822:48853916,	48851964	48852099	48852065	48852065	Nonsense_Mutation	C	T	p.R115*
BLCA	TCGA-KQ-A41N-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414151	179414151	Nonsense_Mutation	C	G	p.S537*
BLCA	TCGA-KQ-A41N-01	GDPD3	ENST00000566434.1	chr16	30116164:30116330:30119441:30119585:30119693:30119753,	30119442	30119585	30119560	30119560	Nonsense_Mutation	G	A	p.R265*
BLCA	TCGA-KQ-A41N-01	GDPD3	ENST00000360688.3,ENST00000406256.3	chr16	30116164:30116330:30119533:30119585:30119693:30119753,	30119534	30119585	30119560	30119560	Nonsense_Mutation	G	A	p.R265*
BLCA	TCGA-KQ-A41N-01	KCNMB3	ENST00000392686.2,ENST00000485523.1	chr3	178962282:178962481:178968530:178968722:178976735:178976996,	178968531	178968722	178968691	178968691	Nonsense_Mutation	C	A	p.E30*
BLCA	TCGA-KQ-A41N-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981146	201981146	Nonsense_Mutation	G	A	p.W75*
BLCA	TCGA-KQ-A41N-01	DGCR6	ENST00000480608.1	chr22	18894077:18894599:18897691:18897785:18898400:18898541,	18897692	18897785	18897774	18897774	Nonsense_Mutation	C	T	p.R121*
BLCA	TCGA-KQ-A41N-01	DGCR6	ENST00000413981.1,ENST00000331444.6,ENST00000483718.1	chr22	18894090:18894238:18897684:18897785:18898400:18898541,	18897685	18897785	18897774	18897774	Nonsense_Mutation	C	T	p.R121*
BLCA	TCGA-KQ-A41N-01	UGP2	ENST00000497510.1	chr2	64069239:64069338:64083439:64083567:64084962:64085070,64068265:64068366:64083439:64083567:64084962:64085070,	64083440	64083567	64083559	64083559	Nonsense_Mutation	G	T	p.E47*
BLCA	TCGA-KQ-A41N-01	UGP2	ENST00000497883.1	chr2	64069239:64069338:64083463:64083567:64084962:64085070,	64083464	64083567	64083559	64083559	Nonsense_Mutation	G	T	p.E47*
BLCA	TCGA-KQ-A41N-01	ENPP3	ENST00000427707.1,ENST00000427148.2	chr6	131992387:131992467:131995301:131995550:131996219:131996329,	131995302	131995550	131995467	131995467	Nonsense_Mutation	C	T	p.Q236*
BLCA	TCGA-KQ-A41O-01	EXOSC8	ENST00000474661.1,ENST00000464235.1,ENST00000495092.1,ENST00000490537.2,ENST00000389704.3,ENST00000488779.1,ENST00000239893.5	chr13	37580093:37580162:37580251:37580297:37581111:37581208,	37580252	37580297	37580265	37580265	Nonsense_Mutation	C	T	p.Q120*
BLCA	TCGA-KQ-A41O-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938447	44938447	Nonsense_Mutation	G	T	p.E999*
BLCA	TCGA-KQ-A41O-01	CREBRF	ENST00000296953.2	chr5	172517317:172518404:172535626:172535821:172537524:172537714,	172535627	172535821	172535678	172535678	Nonsense_Mutation	C	A	p.S425*
BLCA	TCGA-KQ-A41O-01	QPCT	ENST00000338415.3	chr2	37571870:37571994:37586722:37587001:37594374:37594551,37579931:37580078:37586722:37587001:37594374:37594551,	37586723	37587001	37586817	37586817	Nonsense_Mutation	C	G	p.S121*
BLCA	TCGA-KQ-A41O-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376407	59376407	Nonsense_Mutation	C	T	p.Q793*
BLCA	TCGA-KQ-A41O-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376407	59376407	Nonsense_Mutation	C	T	p.Q793*
BLCA	TCGA-KQ-A41P-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62203650:62203827:62204804:62205091:62207222:62207345,	62204805	62205091	62204942	62204942	Nonsense_Mutation	C	T	p.R464*
BLCA	TCGA-KQ-A41P-01	MAPK12	ENST00000395780.1	chr22	50695363:50695393:50695510:50695622:50696671:50696730,50695027:50695075:50695510:50695622:50696671:50696730,	50695511	50695622	50695570	50695570	Nonsense_Mutation	C	A	p.E123*
BLCA	TCGA-KQ-A41P-01	PON1	ENST00000433729.1	chr7	94946045:94946101:94947634:94947705:94953713:94953788,	94947635	94947705	94947686	94947686	Nonsense_Mutation	G	A	p.R32*
BLCA	TCGA-KQ-A41P-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180377239:180377368:180377464:180377557:180378357:180378516,	180377465	180377557	180377515	180377515	Nonsense_Mutation	G	A	p.Q271*
BLCA	TCGA-KQ-A41P-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000524446.1	chr11	9166608:9166660:9167216:9167362:9171627:9171720,9166608:9166660:9167216:9167362:9168576:9168698,	9167217	9167362	9167252	9167252	Nonsense_Mutation	G	A	p.Q990*
BLCA	TCGA-KQ-A41P-01	USP34	ENST00000398571.2	chr2	61523934:61524060:61528085:61528295:61528488:61528589,	61528086	61528295	61528241	61528241	Nonsense_Mutation	G	A	p.Q1325*
BLCA	TCGA-KQ-A41P-01	MYO5C	ENST00000560809.1	chr15	52529678:52529843:52531929:52532076:52534244:52534326,52529678:52529843:52531929:52532076:52536552:52536715,	52531930	52532076	52531977	52531977	Nonsense_Mutation	G	A	p.Q886*
BLCA	TCGA-KQ-A41P-01	RAB3GAP2	ENST00000474966.1,ENST00000358951.2	chr1	220324597:220324748:220324947:220325106:220326526:220326748,	220324948	220325106	220325067	220325067	Nonsense_Mutation	G	A	p.Q1303*
BLCA	TCGA-KQ-A41Q-01	RMND1	ENST00000444024.1	chr6	151754289:151754365:151757580:151757689:151766442:151766960,151754289:151754365:151757580:151757689:151773150:151773254,	151757581	151757689	151757629	151757629	Nonsense_Mutation	G	A	p.Q189*
BLCA	TCGA-KQ-A41Q-01	PLXND1	ENST00000324093.4,ENST00000393239.1	chr3	129284729:129284860:129285369:129285474:129286334:129286447,	129285370	129285474	129285420	129285420	Nonsense_Mutation	G	A	p.Q1381*
BLCA	TCGA-KQ-A41R-01	CCDC117	ENST00000432510.1,ENST00000443309.2,ENST00000453543.1,ENST00000249064.4	chr22	29169712:29169766:29176935:29177160:29179495:29179633,	29176936	29177160	29176964	29176964	Nonsense_Mutation	G	T	p.E90*
BLCA	TCGA-KQ-A41R-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711913	89711913	Nonsense_Mutation	T	G	p.Y177*
BLCA	TCGA-KQ-A41R-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192582	211192582	Nonsense_Mutation	G	C	p.S192*
BLCA	TCGA-KQ-A41R-01	KCNH1	ENST00000367007.4	chr1	211092981:211093411:211192205:211192598:211256121:211256240,	211192206	211192598	211192582	211192582	Nonsense_Mutation	G	C	p.S192*
BLCA	TCGA-KQ-A41R-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603478	95603478	Nonsense_Mutation	C	A	p.E528*
BLCA	TCGA-KQ-A41R-01	DCTN4	ENST00000447998.2,ENST00000446090.2,ENST00000424236.1	chr5	150090419:150090924:150095126:150095224:150097837:150097945,	150095127	150095224	150095149	150095149	Nonsense_Mutation	G	A	p.Q383*
BLCA	TCGA-KQ-A41R-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47038501:47038562:47038717:47038894:47039278:47039436,	47038718	47038894	47038822	47038822	Nonsense_Mutation	C	T	p.Q277*
BLCA	TCGA-KQ-A41R-01	KDM3B	ENST00000510866.1,ENST00000314358.5	chr5	137715272:137715397:137717204:137717279:137721710:137721879,	137717205	137717279	137717271	137717271	Nonsense_Mutation	C	T	p.Q258*
BLCA	TCGA-KQ-A41R-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229536	7229536	Nonsense_Mutation	C	T	p.Q402*
BLCA	TCGA-KQ-A41R-01	DAGLB	ENST00000436575.1,ENST00000297056.6	chr7	6472467:6472590:6475992:6476164:6485583:6485735,6474424:6474651:6475992:6476164:6485583:6485735,	6475993	6476164	6476042	6476042	Nonsense_Mutation	G	A	p.Q124*
BLCA	TCGA-KQ-A41R-01	FOXP1	ENST00000493089.1,ENST00000498215.1,ENST00000468577.1,ENST00000475937.1,ENST00000318789.4,ENST00000472382.1,ENST00000485326.2,ENST00000497553.1,ENST00000491238.1,ENST00000327590.4	chr3	71096092:71096246:71101687:71101777:71102786:71102924,	71101688	71101777	71101729	71101729	Nonsense_Mutation	G	A	p.Q157*
BLCA	TCGA-KQ-A41R-01	HSPA9	ENST00000297185.3,ENST00000507097.1	chr5	137894241:137894346:137895552:137895780:137897268:137897478,	137895553	137895780	137895693	137895693	Nonsense_Mutation	G	A	p.Q424*
BLCA	TCGA-KQ-A41R-01	SBF2	ENST00000530741.1,ENST00000256190.8	chr11	9850902:9851043:9853770:9853967:9861044:9861150,	9853771	9853967	9853789	9853789	Nonsense_Mutation	G	A	p.Q1212*
BLCA	TCGA-KQ-A41R-01	SMC1B	ENST00000404354.3	chr22	45741339:45741450:45749857:45750012:45750838:45750995,	45749858	45750012	45749910	45749910	Nonsense_Mutation	G	C	p.S1074*
BLCA	TCGA-KQ-A41R-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475393	32475393	Nonsense_Mutation	G	A	p.Q514*
BLCA	TCGA-KQ-A41R-01	APCDD1	ENST00000355285.5	chr18	10472003:10472058:10485458:10485780:10487586:10487660,	10485459	10485780	10485673	10485673	Nonsense_Mutation	C	A	p.S330*
BLCA	TCGA-KQ-A41R-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924367	150924367	Nonsense_Mutation	A	T	p.Y2107*
BLCA	TCGA-KQ-A41S-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BLCA	TCGA-KQ-A41S-01	FBXO16	ENST00000346498.2	chr8	28286159:28286253:28304687:28304790:28309760:28309993,	28304688	28304790	28304753	28304753	Nonsense_Mutation	G	A	p.R260*
BLCA	TCGA-KQ-A41S-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842326:68842470:68842595:68842751:68844099:68844165,	68842596	68842751	68842716	68842716	Nonsense_Mutation	G	T	p.E218*
BLCA	TCGA-KQ-A41S-01	DOCK1	ENST00000280333.6	chr10	128835982:128836080:128840888:128840978:128841327:128841428,	128840889	128840978	128840895	128840895	Nonsense_Mutation	C	T	p.Q652*
BLCA	TCGA-LC-A66R-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
BLCA	TCGA-LC-A66R-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094386	27094386	Nonsense_Mutation	G	T	p.E1032*
BLCA	TCGA-LT-A5Z6-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35380466:35380636:35381096:35381212:35381552:35381716,	35381097	35381212	35381168	35381168	Nonsense_Mutation	G	T	p.E734*
BLCA	TCGA-LT-A5Z6-01	CCL21	ENST00000259607.2	chr9	34709001:34709424:34709496:34709679:34709773:34709894,	34709497	34709679	34709657	34709657	Nonsense_Mutation	G	A	p.Q71*
BLCA	TCGA-LT-A5Z6-01	STAT1	ENST00000409465.1,ENST00000540176.1,ENST00000361099.3	chr2	191839555:191839658:191840537:191840613:191841565:191841648,	191840538	191840613	191840560	191840560	Nonsense_Mutation	C	A	p.E705*
BLCA	TCGA-LT-A5Z6-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000553308.1,ENST00000344113.4,ENST00000555002.1	chr14	64565464:64565539:64568649:64568760:64574208:64574325,	64568650	64568760	64568722	64568722	Nonsense_Mutation	G	T	p.E537*
BLCA	TCGA-LT-A5Z6-01	FAM161A	ENST00000404929.1	chr2	62063191:62063244:62065672:62065840:62066555:62066659,	62065673	62065840	62065721	62065721	Nonsense_Mutation	G	C	p.S568*
BLCA	TCGA-LT-A5Z6-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
BLCA	TCGA-LT-A5Z6-01	DNHD1	ENST00000254579.6,ENST00000530197.1,ENST00000529821.1,ENST00000533635.1,ENST00000527990.2	chr11	6591476:6591626:6591847:6592653:6592865:6593044,	6591848	6592653	6592102	6592102	Nonsense_Mutation	C	T	p.Q4454*
BLCA	TCGA-LT-A5Z6-01	TMEM245	ENST00000374586.3,ENST00000472207.1,ENST00000491854.1,ENST00000413712.2	chr9	111782367:111782785:111795586:111795781:111798485:111798660,	111795587	111795781	111795591	111795591	Nonsense_Mutation	G	A	p.Q864*
BLCA	TCGA-LT-A5Z6-01	GMPR2	ENST00000558483.1	chr14	24706725:24706768:24707451:24707611:24707794:24707954,24706725:24706768:24707451:24707611:24707832:24708252,	24707452	24707611	24707568	24707568	Nonsense_Mutation	G	T	p.E290*
BLCA	TCGA-LT-A5Z6-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9258381	9258381	Nonsense_Mutation	G	T	p.E1706*
BLCA	TCGA-LT-A5Z6-01	TINF2	ENST00000559969.1,ENST00000558476.1,ENST00000267415.7,ENST00000540705.1,ENST00000399423.4	chr14	24710225:24710322:24710409:24710517:24710880:24710982,	24710410	24710517	24710511	24710511	Nonsense_Mutation	C	A	p.E136*
BLCA	TCGA-LT-A5Z6-01	IFNGR2	ENST00000405436.1,ENST00000381995.1	chr21	34783750:34783881:34787194:34787327:34793786:34793992,34783146:34783198:34787194:34787327:34793786:34793992,	34787195	34787327	34787221	34787221	Nonsense_Mutation	C	T	p.Q34*
BLCA	TCGA-LT-A5Z6-01	SERPINC1	ENST00000367698.3	chr1	173879891:173880029:173880936:173881152:173883690:173883803,	173880937	173881152	173881113	173881113	Nonsense_Mutation	G	A	p.Q150*
BLCA	TCGA-MV-A51V-01	ZNF131	ENST00000509156.1,ENST00000399534.1	chr5	43123310:43123412:43161350:43162033:43173419:43173550,43139266:43139411:43161350:43162033:43173419:43173550,	43161351	43162033	43161484	43161484	Nonsense_Mutation	G	T	p.E169*
BLCA	TCGA-MV-A51V-01	SLFN5	ENST00000542451.1	chr17	33570107:33570162:33585669:33586721:33587989:33588115,	33585670	33586721	33585830	33585830	Nonsense_Mutation	G	T	p.E41*
BLCA	TCGA-MV-A51V-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000419169.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183502810:183502967:183506279:183506350:183507514:183507575,	183506280	183506350	183506339	183506339	Nonsense_Mutation	C	G	p.S437*
BLCA	TCGA-MV-A51V-01	ATG13	ENST00000528494.1	chr11	46680971:46681035:46686398:46686509:46686932:46687069,46685549:46685645:46686398:46686509:46686932:46687069,	46686399	46686509	46686403	46686403	Nonsense_Mutation	C	G	p.S265*
BLCA	TCGA-MV-A51V-01	HNRNPK	ENST00000360384.5,ENST00000376264.2,ENST00000351839.3	chr9	86584330:86584355:86585076:86585246:86585651:86585719,86583823:86584295:86585076:86585246:86585651:86585719,	86585077	86585246	86585192	86585192	Nonsense_Mutation	C	A	p.E416*
BLCA	TCGA-MV-A51V-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000571505.1,ENST00000300036.5	chr16	15917111:15917268:15931764:15932126:15950797:15950868,	15931765	15932126	15931778	15931778	Nonsense_Mutation	G	C	p.S111*
BLCA	TCGA-MV-A51V-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984858	36984858	Nonsense_Mutation	C	T	p.Q526*
BLCA	TCGA-MV-A51V-01	DHTKD1	ENST00000448829.1,ENST00000263035.4	chr10	12139682:12139995:12142176:12142261:12143040:12143180,	12142177	12142261	12142258	12142258	Nonsense_Mutation	C	T	p.Q585*
BLCA	TCGA-MV-A51V-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438534	58438534	Nonsense_Mutation	C	A	p.E339*
BLCA	TCGA-MV-A51V-01	KCTD20	ENST00000449081.2	chr6	36410814:36410888:36437828:36438034:36446897:36447000,36410814:36410888:36437828:36438034:36449338:36449536,	36437829	36438034	36437987	36437987	Nonsense_Mutation	C	A	p.S38*
BLCA	TCGA-MV-A51V-01	CPA2	ENST00000222481.4,ENST00000416698.1,ENST00000480781.1,ENST00000487259.1	chr7	129909508:129909643:129910532:129910628:129912915:129913017,	129910533	129910628	129910554	129910554	Nonsense_Mutation	G	T	p.E104*
BLCA	TCGA-MV-A51V-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000368993.2	chr1	150686560:150686597:150689613:150689758:150691948:150692014,150687090:150687154:150689613:150689758:150691948:150692014,	150689614	150689758	150689730	150689730	Nonsense_Mutation	G	C	p.S21*
BLCA	TCGA-MV-A51V-01	HORMAD1	ENST00000476530.1	chr1	150687090:150687154:150689613:150689783:150691948:150692014,	150689614	150689783	150689730	150689730	Nonsense_Mutation	G	C	p.S21*
BLCA	TCGA-MV-A51V-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256539	9256539	Nonsense_Mutation	G	T	p.E1092*
BLCA	TCGA-MV-A51V-01	GTPBP10	ENST00000222511.6,ENST00000450619.1,ENST00000426366.1	chr7	89982129:89982323:89983771:89983863:90001468:90001542,89982129:89982323:89983771:89983863:90003615:90003668,89982129:89982323:89983771:89983863:89984399:89984544,	89983772	89983863	89983834	89983834	Nonsense_Mutation	C	A	p.S97*
BLCA	TCGA-MV-A51V-01	SPATS2	ENST00000552655.1,ENST00000549412.1,ENST00000552557.1,ENST00000321898.6,ENST00000553127.1,ENST00000552918.1	chr12	49884464:49884514:49888523:49888785:49890615:49890672,	49888524	49888785	49888630	49888630	Nonsense_Mutation	C	A	p.S124*
BLCA	TCGA-MV-A51V-01	ANAPC1	ENST00000427997.1,ENST00000341068.3	chr2	112583353:112583432:112588862:112589011:112590796:112590888,	112588863	112589011	112588952	112588952	Nonsense_Mutation	G	A	p.Q846*
BLCA	TCGA-MV-A51V-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85492132:85492326:85492644:85492772:85497781:85497855,	85492645	85492772	85492706	85492706	Nonsense_Mutation	C	G	p.S1048*
BLCA	TCGA-MV-A51V-01	MRPL51	ENST00000537701.1	chr12	6601316:6601633:6602027:6602138:6602882:6603006,	6602028	6602138	6602077	6602077	Nonsense_Mutation	C	T	p.W47*
BLCA	TCGA-MV-A51V-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21374969:21375129:21381595:21381773:21382574:21382720,	21381596	21381773	21381666	21381666	Nonsense_Mutation	G	A	p.Q583*
BLCA	TCGA-MV-A51V-01	ANAPC1	ENST00000427997.1,ENST00000341068.3	chr2	112583353:112583432:112588862:112589011:112590796:112590888,	112588863	112589011	112589009	112589009	Nonsense_Mutation	G	A	p.Q827*
BLCA	TCGA-MV-A51V-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263619	1263619	Nonsense_Mutation	G	T	p.E1840*
BLCA	TCGA-MV-A51V-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58437661	58437661	Nonsense_Mutation	C	A	p.E630*
BLCA	TCGA-MV-A51V-01	ARPC1A	ENST00000262942.5,ENST00000432786.1,ENST00000432884.2,ENST00000441989.2	chr7	98946515:98946582:98951531:98951744:98955962:98956026,	98951532	98951744	98951563	98951563	Nonsense_Mutation	G	T	p.E131*
BLCA	TCGA-MV-A51V-01	GARS	ENST00000389266.3,ENST00000478124.1	chr7	30649200:30649346:30651711:30651861:30655511:30655674,	30651712	30651861	30651839	30651839	Nonsense_Mutation	C	T	p.R337*
BLCA	TCGA-MV-A51V-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717553	73717553	Nonsense_Mutation	G	T	p.E2822*
BLCA	TCGA-MV-A51V-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000427635.2,ENST00000412272.2	chr10	69797849:69797926:69804160:69804320:69832639:69832854,	69804161	69804320	69804185	69804185	Nonsense_Mutation	G	C	p.S121*
BLCA	TCGA-MV-A51V-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561532	145561532	Nonsense_Mutation	C	G	p.S407*
BLCA	TCGA-MV-A51V-01	RIT2	ENST00000589109.1,ENST00000590910.1,ENST00000282028.4	chr18	40554038:40554112:40613775:40613832:40695381:40695614,	40613776	40613832	40613806	40613806	Nonsense_Mutation	G	A	p.Q44*
BLCA	TCGA-MV-A51V-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96028685:96028793:96030242:96030359:96033318:96033477,	96030243	96030359	96030322	96030322	Nonsense_Mutation	C	A	p.S1490*
BLCA	TCGA-MV-A51V-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43898187:43898275:43898398:43898470:43898659:43898861,	43898399	43898470	43898459	43898459	Nonsense_Mutation	C	G	p.S1807*
BLCA	TCGA-MV-A51V-01	SYNE2	ENST00000357395.3,ENST00000555612.1,ENST00000555022.1,ENST00000358025.3,ENST00000553289.1,ENST00000554805.1,ENST00000394768.2,ENST00000553806.1,ENST00000344113.4,ENST00000554584.1,ENST00000554997.1,ENST00000555002.1	chr14	64676668:64676842:64678678:64678816:64679528:64679584,	64678679	64678816	64678779	64678779	Nonsense_Mutation	C	G	p.S2660*
BLCA	TCGA-MV-A51V-01	ZNF141	ENST00000512994.1	chr4	338123:338219:366452:366796:376883:377760,	366453	366796	366777	366777	Nonsense_Mutation	C	G	p.S184*
BLCA	TCGA-MV-A51V-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727291	137727291	Nonsense_Mutation	C	G	p.S657*
BLCA	TCGA-MV-A51V-01	C20orf194	ENST00000252032.9,ENST00000453730.2	chr20	3297369:3297440:3298935:3299047:3302863:3302909,	3298936	3299047	3298957	3298957	Nonsense_Mutation	G	A	p.Q483*
BLCA	TCGA-MV-A51V-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327170	16327170	Nonsense_Mutation	G	A	p.Q458*
BLCA	TCGA-MV-A51V-01	MIOS	ENST00000405785.1,ENST00000340080.4,ENST00000493227.1	chr7	7634610:7634763:7635887:7636092:7645572:7645702,	7635888	7636092	7635969	7635969	Nonsense_Mutation	C	T	p.Q760*
BLCA	TCGA-MV-A51V-01	HAUS6	ENST00000380502.3	chr9	19053140:19056402:19057958:19058999:19060085:19060221,	19057959	19058999	19058381	19058381	Nonsense_Mutation	G	C	p.S795*
BLCA	TCGA-MV-A51V-01	DDX11	ENST00000536265.1,ENST00000407793.2,ENST00000535158.1,ENST00000350437.4,ENST00000542838.1,ENST00000415475.2,ENST00000542129.1,ENST00000540935.1,ENST00000228264.6,ENST00000539049.1,ENST00000545668.1	chr12	31236900:31236995:31237902:31238060:31240871:31240917,31237516:31237603:31237902:31238060:31240871:31240917,	31237903	31238060	31237975	31237975	Nonsense_Mutation	G	T	p.E185*
BLCA	TCGA-MV-A51V-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000368993.2	chr1	150686560:150686597:150689613:150689758:150691948:150692014,150687090:150687154:150689613:150689758:150691948:150692014,	150689614	150689758	150689682	150689682	Nonsense_Mutation	G	T	p.S37*
BLCA	TCGA-MV-A51V-01	HORMAD1	ENST00000476530.1	chr1	150687090:150687154:150689613:150689783:150691948:150692014,	150689614	150689783	150689682	150689682	Nonsense_Mutation	G	T	p.S37*
BLCA	TCGA-MV-A51V-01	ZNF90	ENST00000418063.2,ENST00000473524.1	chr19	20188845:20188944:20215047:20215174:20216029:20216125,	20215048	20215174	20215090	20215090	Nonsense_Mutation	G	T	p.E16*
BLCA	TCGA-MV-A51V-01	HIRIP3	ENST00000563053.1	chr16	30004969:30005129:30005968:30006164:30006423:30006538,	30005969	30006164	30006059	30006059	Nonsense_Mutation	G	C	p.S136*
BLCA	TCGA-MV-A51V-01	HIRIP3	ENST00000279392.3	chr16	30004969:30005129:30005226:30006164:30006423:30006538,	30005227	30006164	30006059	30006059	Nonsense_Mutation	G	C	p.S136*
BLCA	TCGA-MV-A51V-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167855037:167855146:167855711:167855792:167857141:167857228,	167855712	167855792	167855723	167855723	Nonsense_Mutation	C	A	p.S644*
BLCA	TCGA-MV-A51V-01	ARIH2	ENST00000356401.4,ENST00000449376.1,ENST00000452385.1	chr3	49016914:49017066:49017785:49017929:49019092:49019161,	49017786	49017929	49017852	49017852	Nonsense_Mutation	C	T	p.Q394*
BLCA	TCGA-PQ-A6FI-01	CREBBP	ENST00000262367.5	chr16	3832684:3832927:3841981:3842095:3843386:3843627,	3841982	3842095	3841997	3841997	Nonsense_Mutation	T	A	p.K439*
BLCA	TCGA-PQ-A6FI-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395370	64395370	Nonsense_Mutation	C	T	p.Q583*
BLCA	TCGA-PQ-A6FI-01	ARHGEF2	ENST00000497907.1,ENST00000368316.1,ENST00000361247.4,ENST00000609707.1,ENST00000313695.7,ENST00000313667.4,ENST00000368315.4,ENST00000471589.1,ENST00000462460.2	chr1	155935114:155935203:155935421:155935551:155936206:155936264,	155935422	155935551	155935540	155935540	Nonsense_Mutation	C	A	p.E163*
BLCA	TCGA-PQ-A6FN-01	CRISP3	ENST00000433368.2,ENST00000393666.1,ENST00000263045.4,ENST00000371159.4,ENST00000423399.2	chr6	49696420:49696570:49698875:49698964:49700907:49701005,	49698876	49698964	49698956	49698956	Nonsense_Mutation	C	T	p.W200*
BLCA	TCGA-PQ-A6FN-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244538	41244538	Nonsense_Mutation	C	A	p.E708*
BLCA	TCGA-PQ-A6FN-01	CCDC178	ENST00000383096.3,ENST00000579947.1,ENST00000300227.8,ENST00000403303.1	chr18	30554510:30554645:30672724:30672874:30791859:30792019,	30672725	30672874	30672756	30672756	Nonsense_Mutation	G	C	p.S786*
BLCA	TCGA-R3-A69X-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000521377.1,ENST00000519588.1,ENST00000359530.2,ENST00000355221.3	chr8	54727291:54727326:54729976:54730090:54742003:54742093,	54729977	54730090	54730081	54730081	Nonsense_Mutation	G	A	p.Q106*
BLCA	TCGA-R3-A69X-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96640929	96640929	Nonsense_Mutation	C	G	p.S140*
BLCA	TCGA-R3-A69X-01	GDA	ENST00000475764.1,ENST00000489618.1	chr9	74862321:74862349:74863187:74863322:74865665:74865720,	74863188	74863322	74863251	74863251	Nonsense_Mutation	C	A	p.S453*
BLCA	TCGA-R3-A69X-01	GDA	ENST00000238018.4,ENST00000376989.3,ENST00000376986.1,ENST00000436438.1	chr9	74862321:74862349:74863187:74863254:74865665:74865720,	74863188	74863254	74863251	74863251	Nonsense_Mutation	C	A	p.S453*
BLCA	TCGA-R3-A69X-01	PRKCZ	ENST00000400921.2,ENST00000461106.2,ENST00000478770.2,ENST00000486681.1,ENST00000503672.1,ENST00000378567.3,ENST00000479263.1,ENST00000400920.1	chr1	2080310:2080363:2082228:2082417:2087433:2087526,	2082229	2082417	2082274	2082274	Nonsense_Mutation	C	T	p.Q62*
BLCA	TCGA-R3-A69X-01	FMN2	ENST00000463398.1,ENST00000319653.9,ENST00000441342.1	chr1	240421244:240421332:240458121:240458183:240492375:240492467,	240458122	240458183	240458166	240458166	Nonsense_Mutation	C	T	p.Q1400*
BLCA	TCGA-R3-A69X-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40440385	40440385	Nonsense_Mutation	C	A	p.E176*
BLCA	TCGA-S5-A6DX-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155340294:155340441:155340567:155340774:155348071:155348180,	155340568	155340774	155340689	155340689	Nonsense_Mutation	G	A	p.Q2145*
BLCA	TCGA-S5-A6DX-01	WDFY3	ENST00000295888.4,ENST00000322366.6,ENST00000425179.2	chr4	85599320:85599432:85600071:85600395:85603526:85603623,	85600072	85600395	85600102	85600102	Nonsense_Mutation	C	A	p.E3356*
BLCA	TCGA-S5-A6DX-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229506	7229506	Nonsense_Mutation	C	T	p.Q392*
BLCA	TCGA-S5-A6DX-01	PTGFRN	ENST00000393203.2	chr1	117503864:117504290:117509532:117509952:117516837:117516945,	117509533	117509952	117509836	117509836	Nonsense_Mutation	C	G	p.S648*
BLCA	TCGA-S5-A6DX-01	TLN1	ENST00000314888.9,ENST00000540444.1	chr9	35714235:35714370:35714570:35714684:35714756:35714873,	35714571	35714684	35714609	35714609	Nonsense_Mutation	G	A	p.Q983*
BLCA	TCGA-S5-A6DX-01	SLC29A1	ENST00000371755.3	chr6	44187392:44187519:44194999:44195079:44197126:44197208,44191350:44191378:44194999:44195079:44197126:44197208,	44195000	44195079	44195021	44195021	Nonsense_Mutation	C	T	p.Q70*
BLCA	TCGA-S5-A6DX-01	NDUFS7	ENST00000540530.1,ENST00000534853.1,ENST00000535382.1,ENST00000233627.9,ENST00000538929.1,ENST00000546283.1,ENST00000313408.7,ENST00000538662.1,ENST00000539480.1,ENST00000546172.3,ENST00000538523.1	chr19	1388523:1388592:1388831:1388937:1390869:1391049,	1388832	1388937	1388836	1388836	Nonsense_Mutation	C	T	p.Q43*
BLCA	TCGA-S5-A6DX-01	NDUFS7	ENST00000414651.2	chr19	1388523:1388592:1388741:1388937:1390869:1391049,	1388742	1388937	1388836	1388836	Nonsense_Mutation	C	T	p.Q43*
BLCA	TCGA-S5-A6DX-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8206600:8206726:8206823:8207021:8209760:8209856,	8206824	8207021	8206968	8206968	Nonsense_Mutation	G	A	p.Q199*
BLCA	TCGA-S5-A6DX-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5789627	5789627	Nonsense_Mutation	C	T	p.R1415*
BLCA	TCGA-S5-A6DX-01	CYP27A1	ENST00000258415.4	chr2	219646896:219647160:219674299:219674490:219676944:219677038,	219674300	219674490	219674351	219674351	Nonsense_Mutation	C	T	p.Q103*
BLCA	TCGA-S5-A6DX-01	AP3B2	ENST00000535359.1,ENST00000261722.3,ENST00000535348.1,ENST00000543938.1	chr15	83330919:83331004:83331445:83331674:83331878:83331985,	83331446	83331674	83331641	83331641	Nonsense_Mutation	C	A	p.E861*
BLCA	TCGA-S5-A6DX-01	ATP11A	ENST00000418678.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113512458:113512604:113513706:113513766:113514600:113514728,	113513707	113513766	113513759	113513759	Nonsense_Mutation	C	G	p.S907*
BLCA	TCGA-S5-A6DX-01	CAPRIN2	ENST00000537553.1	chr12	30869556:30869610:30872012:30873849:30876192:30876248,	30872013	30873849	30872128	30872128	Nonsense_Mutation	G	T	p.S727*
BLCA	TCGA-S5-A6DX-01	CAPRIN2	ENST00000395805.2	chr12	30869556:30869610:30872012:30872159:30873744:30873849,30869556:30869610:30872012:30872159:30876192:30876248,	30872013	30872159	30872128	30872128	Nonsense_Mutation	G	T	p.S727*
BLCA	TCGA-S5-A6DX-01	ETV7	ENST00000373737.4,ENST00000340181.4,ENST00000339796.5	chr6	36341229:36341355:36343647:36343812:36353310:36353446,	36343648	36343812	36343650	36343650	Nonsense_Mutation	G	C	p.S102*
BLCA	TCGA-S5-A6DX-01	NCSTN	ENST00000368065.4,ENST00000368063.1,ENST00000535857.1,ENST00000392212.4,ENST00000294785.5	chr1	160326049:160326137:160326389:160326544:160326830:160327043,	160326390	160326544	160326404	160326404	Nonsense_Mutation	C	T	p.Q532*
BLCA	TCGA-S5-A6DX-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284712	63284712	Nonsense_Mutation	C	G	p.S144*
BLCA	TCGA-S5-A6DX-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578263	14578263	Nonsense_Mutation	G	T	p.E480*
BLCA	TCGA-S5-A6DX-01	MLF1	ENST00000355893.5	chr3	158288983:158289180:158310222:158310370:158314650:158314734,158289049:158289136:158310222:158310370:158314650:158314734,	158310223	158310370	158310242	158310242	Nonsense_Mutation	C	T	p.R23*
BLCA	TCGA-S5-A6DX-01	EDC3	ENST00000563009.1,ENST00000315127.4,ENST00000568176.1,ENST00000569561.1,ENST00000426797.3	chr15	74948360:74948409:74963795:74964115:74967301:74967483,	74963796	74964115	74963867	74963867	Nonsense_Mutation	G	C	p.S138*
BLCA	TCGA-S5-A6DX-01	ARHGAP9	ENST00000548148.1,ENST00000546200.1	chr12	57870159:57870237:57870372:57870746:57870938:57871052,	57870373	57870746	57870686	57870686	Nonsense_Mutation	G	A	p.R382*
BLCA	TCGA-S5-A6DX-01	ARHGAP9	ENST00000548139.1,ENST00000430041.2,ENST00000356411.2,ENST00000393791.3,ENST00000550288.1,ENST00000393797.2,ENST00000424809.2	chr12	57870372:57870434:57870653:57870746:57870938:57871052,	57870654	57870746	57870686	57870686	Nonsense_Mutation	G	A	p.R382*
BLCA	TCGA-S5-A6DX-01	FLAD1	ENST00000368432.1,ENST00000315144.10	chr1	154955906:154956109:154956317:154956542:154960580:154960909,154955813:154955873:154956317:154956542:154959941:154960076,154955842:154955873:154956317:154956542:154960580:154960643,	154956318	154956542	154956531	154956531	Nonsense_Mutation	G	T	p.E121*
BLCA	TCGA-S5-AA26-01	ZBTB17	ENST00000537142.1,ENST00000444358.1,ENST00000375743.4	chr1	16268901:16268915:16269023:16269233:16269558:16269584,	16269024	16269233	16269033	16269033	Nonsense_Mutation	G	A	p.Q677*
BLCA	TCGA-S5-AA26-01	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000497062.2	chr20	45771697:45771787:45797786:45797845:45801354:45801515,	45797787	45797845	45797818	45797818	Nonsense_Mutation	C	G	p.S337*
BLCA	TCGA-SY-A9G0-01	CHL1	ENST00000453040.1,ENST00000397491.2,ENST00000256509.2	chr3	425498:425569:430934:431157:432383:432499,	430935	431157	430987	430987	Nonsense_Mutation	G	A	p.W767*
BLCA	TCGA-SY-A9G0-01	MICALL1	ENST00000454685.1	chr22	38321853:38322050:38323417:38323827:38327805:38327940,	38323418	38323827	38323565	38323565	Nonsense_Mutation	C	G	p.S538*
BLCA	TCGA-SY-A9G0-01	MICALL1	ENST00000215957.6	chr22	38321853:38322050:38323417:38323833:38327805:38327940,	38323418	38323833	38323565	38323565	Nonsense_Mutation	C	G	p.S538*
BLCA	TCGA-SY-A9G0-01	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351605	71351605	Nonsense_Mutation	G	A	p.Q37*
BLCA	TCGA-SY-A9G5-01	USP4	ENST00000485450.1,ENST00000431357.1,ENST00000265560.4,ENST00000351842.4	chr3	49335302:49335397:49335984:49336068:49337899:49338124,	49335985	49336068	49336023	49336023	Nonsense_Mutation	C	A	p.E473*
BLCA	TCGA-SY-A9G5-01	BAD	ENST00000394531.3	chr11	64039084:64039275:64044375:64044515:64051653:64051694,	64044376	64044515	64044410	64044410	Nonsense_Mutation	G	C	p.S98*
BLCA	TCGA-SY-A9G5-01	WDHD1	ENST00000420358.2,ENST00000567693.1,ENST00000360586.3,ENST00000421192.1,ENST00000359167.4	chr14	55408207:55408408:55411049:55411188:55422278:55422412,	55411050	55411188	55411117	55411117	Nonsense_Mutation	G	C	p.S1041*
BLCA	TCGA-SY-A9G5-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38269159:38269431:38302550:38302733:38308748:38309692,	38302551	38302733	38302561	38302561	Nonsense_Mutation	G	C	p.S390*
BLCA	TCGA-SY-A9G5-01	PLD2	ENST00000572940.1,ENST00000263088.6,ENST00000575316.1	chr17	4711568:4711711:4712394:4712500:4712592:4712620,	4712395	4712500	4712420	4712420	Nonsense_Mutation	C	T	p.R137*
BLCA	TCGA-SY-A9G5-01	TRAF3IP2	ENST00000532708.1,ENST00000392556.4,ENST00000340026.6	chr6	111901399:111901592:111912460:111913297:111926978:111927073,111901399:111901592:111912460:111913297:111922398:111922509,	111912461	111913297	111913238	111913238	Nonsense_Mutation	G	A	p.Q18*
BLCA	TCGA-SY-A9G5-01	SPAST	ENST00000315285.3	chr2	32314590:32314674:32339706:32339894:32340770:32340904,32323864:32323960:32339706:32339894:32340770:32340904,	32339707	32339894	32339758	32339758	Nonsense_Mutation	C	A	p.S245*
BLCA	TCGA-SY-A9G5-01	SHROOM2	ENST00000418909.2,ENST00000380913.3,ENST00000452575.1	chrX	9907234:9907406:9912680:9912953:9914710:9914748,	9912681	9912953	9912780	9912780	Nonsense_Mutation	G	T	p.E1471*
BLCA	TCGA-SY-A9G5-01	MST1	ENST00000494809.1,ENST00000484269.1,ENST00000383728.3	chr3	49723295:49723395:49723494:49723914:49724116:49724235,	49723495	49723914	49723780	49723780	Nonsense_Mutation	G	A	p.Q328*
BLCA	TCGA-SY-A9G5-01	MST1	ENST00000449682.2,ENST00000489007.1	chr3	49723494:49723625:49723745:49723914:49724116:49724235,	49723746	49723914	49723780	49723780	Nonsense_Mutation	G	A	p.Q328*
BLCA	TCGA-SY-A9G5-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1	chr1	17320123:17320330:17322470:17322659:17322748:17322778,	17322471	17322659	17322647	17322647	Nonsense_Mutation	C	A	p.E451*
BLCA	TCGA-SY-A9G5-01	ECM2	ENST00000444490.2	chr9	95274292:95274408:95276912:95277419:95279968:95280157,	95276913	95277419	95277372	95277372	Nonsense_Mutation	G	A	p.Q199*
BLCA	TCGA-SY-A9G5-01	ECM2	ENST00000344604.5	chr9	95274292:95274408:95276912:95277485:95279968:95280157,	95276913	95277485	95277372	95277372	Nonsense_Mutation	G	A	p.Q199*
BLCA	TCGA-SY-A9G5-01	PDIA4	ENST00000286091.4	chr7	148702232:148702466:148702988:148703145:148705250:148705402,	148702989	148703145	148703136	148703136	Nonsense_Mutation	G	A	p.Q381*
BLCA	TCGA-SY-A9G5-01	ADIPOR1	ENST00000436244.1,ENST00000495562.1,ENST00000340990.5	chr1	202909962:202910829:202911152:202911346:202912885:202913073,	202911153	202911346	202911287	202911287	Nonsense_Mutation	C	A	p.E289*
BLCA	TCGA-SY-A9G5-01	SPAG16	ENST00000374309.3,ENST00000331683.5,ENST00000452556.1,ENST00000406979.2	chr2	214727208:214727352:214794683:214794869:214878674:214878801,	214794684	214794869	214794833	214794833	Nonsense_Mutation	C	G	p.S455*
BLCA	TCGA-SY-A9G5-01	SUPT16H	ENST00000556309.1,ENST00000216297.2	chr14	21837507:21837514:21837908:21838055:21838494:21838647,	21837909	21838055	21837929	21837929	Nonsense_Mutation	C	A	p.E204*
BLCA	TCGA-SY-A9G5-01	SRCAP	ENST00000483083.1,ENST00000395059.2,ENST00000262518.4	chr16	30731482:30731652:30732033:30732299:30732509:30732797,	30732034	30732299	30732201	30732201	Nonsense_Mutation	C	G	p.S1052*
BLCA	TCGA-SY-A9G5-01	CDC42BPA	ENST00000478573.2,ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227400836:227400920:227441764:227441856:227504705:227504748,	227441765	227441856	227441767	227441767	Nonsense_Mutation	C	A	p.E90*
BLCA	TCGA-SY-A9G5-01	OSBPL2	ENST00000313733.3	chr20	60831112:60831277:60835036:60835181:60838671:60838747,	60835037	60835181	60835171	60835171	Nonsense_Mutation	C	T	p.Q58*
BLCA	TCGA-SY-A9G5-01	OSBPL2	ENST00000358053.2	chr20	60831112:60831277:60835072:60835181:60838671:60838747,	60835073	60835181	60835171	60835171	Nonsense_Mutation	C	T	p.Q58*
BLCA	TCGA-SY-A9G5-01	SLC6A1	ENST00000287766.4,ENST00000536032.1	chr3	11070420:11070533:11070906:11071038:11072862:11072965,	11070907	11071038	11071036	11071036	Nonsense_Mutation	C	T	p.Q441*
BLCA	TCGA-SY-A9G5-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46121398:46122553:46135263:46135411:46143741:46143982,	46135264	46135411	46135391	46135391	Nonsense_Mutation	G	C	p.S123*
BLCA	TCGA-SY-A9G5-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237349	33237349	Nonsense_Mutation	C	T	p.Q857*
BLCA	TCGA-SY-A9G5-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34759012:34759191:34805906:34806087:34985245:34985347,	34805907	34806087	34805961	34805961	Nonsense_Mutation	G	A	p.Q117*
BLCA	TCGA-SY-A9G5-01	SETD2	ENST00000445387.1,ENST00000409792.3	chr3	47144835:47144913:47147486:47147610:47155365:47155494,	47147487	47147610	47147552	47147552	Nonsense_Mutation	G	A	p.R1592*
BLCA	TCGA-SY-A9G5-01	HACE1	ENST00000519645.1,ENST00000416605.2,ENST00000262903.4,ENST00000524020.1,ENST00000369125.2,ENST00000521962.1	chr6	105297016:105297121:105298781:105298871:105300191:105300246,	105298782	105298871	105298851	105298851	Nonsense_Mutation	G	C	p.S51*
BLCA	TCGA-SY-A9G5-01	IGFBP6	ENST00000301464.3	chr12	53493050:53493108:53494495:53494641:53494824:53494944,53491450:53491835:53494495:53494641:53494824:53494944,	53494496	53494641	53494636	53494636	Nonsense_Mutation	G	T	p.E157*
BLCA	TCGA-SY-A9G5-01	TPRG1	ENST00000433971.1	chr3	188889762:188889920:188925164:188925383:188933080:188933172,188850473:188850486:188925164:188925383:188933080:188933172,	188925165	188925383	188925322	188925322	Nonsense_Mutation	C	G	p.S50*
BLCA	TCGA-SY-A9G5-01	CCDC28B	ENST00000373602.5,ENST00000421922.2	chr1	32669484:32669646:32669786:32669980:32670198:32670221,	32669787	32669980	32669915	32669915	Nonsense_Mutation	G	T	p.E154*
BLCA	TCGA-SY-A9G5-01	CCDC28B	ENST00000461819.1	chr1	32669484:32669646:32669833:32669980:32670198:32670221,	32669834	32669980	32669915	32669915	Nonsense_Mutation	G	T	p.E154*
BLCA	TCGA-SY-A9G5-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61304054:61304293:61308586:61308645:61310288:61310449,	61308587	61308645	61308605	61308605	Nonsense_Mutation	C	G	p.S230*
BLCA	TCGA-SY-A9G5-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659401	43659401	Nonsense_Mutation	G	A	p.W356*
BLCA	TCGA-SY-A9G5-01	SRCAP	ENST00000483083.1,ENST00000395059.2,ENST00000262518.4	chr16	30731482:30731652:30732033:30732299:30732509:30732797,	30732034	30732299	30732144	30732144	Nonsense_Mutation	C	G	p.S1033*
BLCA	TCGA-SY-A9G5-01	LRRC59	ENST00000225972.7	chr17	48462478:48462652:48465420:48465493:48469758:48469863,	48465421	48465493	48465460	48465460	Nonsense_Mutation	G	A	p.Q155*
BLCA	TCGA-SY-A9G5-01	GNL3	ENST00000496254.1,ENST00000492349.1,ENST00000479230.1,ENST00000394799.2,ENST00000460073.1,ENST00000418458.1,ENST00000468146.1	chr3	52721261:52721399:52721517:52721631:52722124:52722206,	52721518	52721631	52721524	52721524	Nonsense_Mutation	G	T	p.E61*
BLCA	TCGA-UY-A78K-01	LDLR	ENST00000558013.1,ENST00000545707.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1,ENST00000455727.2,ENST00000535915.1	chr19	11226769:11226888:11227534:11227674:11230767:11230909,	11227535	11227674	11227636	11227636	Nonsense_Mutation	A	T	p.K603*
BLCA	TCGA-UY-A78K-01	SLC52A2	ENST00000532887.1,ENST00000402965.1,ENST00000527078.1,ENST00000530047.1,ENST00000329994.2	chr8	145582847:145583083:145583282:145584153:145584249:145584343,	145583283	145584153	145583960	145583960	Nonsense_Mutation	C	T	p.Q270*
BLCA	TCGA-UY-A78K-01	SLC52A2	ENST00000526779.1	chr8	145583282:145583407:145583831:145584153:145584249:145584343,	145583832	145584153	145583960	145583960	Nonsense_Mutation	C	T	p.Q270*
BLCA	TCGA-UY-A78K-01	IDH3G	ENST00000217901.5,ENST00000444338.1,ENST00000427365.2,ENST00000444450.1,ENST00000370092.3,ENST00000370093.1,ENST00000497043.1	chrX	153052581:153052608:153052918:153053052:153053277:153053410,	153052919	153053052	153052950	153052950	Nonsense_Mutation	T	A	p.K215*
BLCA	TCGA-UY-A78K-01	FCGR2A	ENST00000536731.1	chr1	161475776:161475797:161476123:161476497:161479609:161479689,	161476124	161476497	161476237	161476237	Nonsense_Mutation	C	T	p.Q74*
BLCA	TCGA-UY-A78K-01	FCGR2A	ENST00000367972.4,ENST00000467654.1	chr1	161475776:161475797:161476126:161476381:161479609:161479689,	161476127	161476381	161476237	161476237	Nonsense_Mutation	C	T	p.Q74*
BLCA	TCGA-UY-A78K-01	FCGR2A	ENST00000483665.2	chr1	161475776:161475797:161476126:161476497:161479609:161479689,	161476127	161476497	161476237	161476237	Nonsense_Mutation	C	T	p.Q74*
BLCA	TCGA-UY-A78K-01	FCGR2A	ENST00000271450.6	chr1	161475776:161475797:161476123:161476381:161479609:161479689,	161476124	161476381	161476237	161476237	Nonsense_Mutation	C	T	p.Q74*
BLCA	TCGA-UY-A78K-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135204826	135204826	Nonsense_Mutation	G	T	p.S720*
BLCA	TCGA-UY-A78K-01	HELZ	ENST00000579953.1,ENST00000580168.1,ENST00000358691.5,ENST00000417253.3	chr17	65185704:65185812:65186272:65186471:65190082:65190158,	65186273	65186471	65186416	65186416	Nonsense_Mutation	G	A	p.Q205*
BLCA	TCGA-UY-A78K-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418338	122418338	Nonsense_Mutation	A	T	p.K313*
BLCA	TCGA-UY-A78K-01	ALMS1	ENST00000423048.1	chr2	73682288:73682422:73716760:73717285:73746901:73747143,	73716761	73717285	73716791	73716791	Nonsense_Mutation	A	T	p.K2568*
BLCA	TCGA-UY-A78K-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73716791	73716791	Nonsense_Mutation	A	T	p.K2568*
BLCA	TCGA-UY-A78K-01	ANXA7	ENST00000372919.4,ENST00000372921.5,ENST00000535178.1	chr10	75135905:75135975:75138668:75138781:75139636:75139712,	75138669	75138781	75138735	75138735	Nonsense_Mutation	G	T	p.Y404*
BLCA	TCGA-UY-A78K-01	INTS8	ENST00000523206.1,ENST00000524333.1	chr8	95844219:95844402:95848751:95848859:95850690:95850846,95844219:95844402:95848751:95848859:95850721:95850846,	95848752	95848859	95848812	95848812	Nonsense_Mutation	G	T	p.E272*
BLCA	TCGA-UY-A78K-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961909	41961909	Nonsense_Mutation	C	T	p.Q273*
BLCA	TCGA-UY-A78K-01	TBL1X	ENST00000380961.1,ENST00000407597.2,ENST00000536365.1,ENST00000424279.1,ENST00000217964.7	chrX	9679650:9679816:9682941:9683043:9684259:9684302,	9682942	9683043	9682998	9682998	Nonsense_Mutation	G	A	p.W554*
BLCA	TCGA-UY-A78K-01	MAP2K1	ENST00000425818.2	chr15	66679174:66679765:66727364:66727575:66729083:66729230,	66727365	66727575	66727426	66727426	Nonsense_Mutation	A	T	p.K48*
BLCA	TCGA-UY-A78K-01	COBL	ENST00000265136.7,ENST00000445054.1	chr7	51111079:51111389:51152862:51153001:51203854:51204028,	51152863	51153001	51152988	51152988	Nonsense_Mutation	G	T	p.S349*
BLCA	TCGA-UY-A78K-01	TSPAN11	ENST00000546076.1	chr12	31079837:31079939:31106914:31107009:31116760:31116952,31079681:31079730:31106914:31107009:31116760:31116952,	31106915	31107009	31106947	31106947	Nonsense_Mutation	C	T	p.Q8*
BLCA	TCGA-UY-A78K-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	120973374:120973438:120976539:120976673:120979919:120980207,	120976540	120976673	120976571	120976571	Nonsense_Mutation	G	A	p.W32*
BLCA	TCGA-UY-A78K-01	ESRRB	ENST00000380887.2,ENST00000505752.1,ENST00000512784.1,ENST00000556177.1,ENST00000507951.1,ENST00000509242.1,ENST00000261532.7	chr14	76905984:76906093:76928887:76929004:76948358:76948469,	76928888	76929004	76928979	76928979	Nonsense_Mutation	C	A	p.C163*
BLCA	TCGA-UY-A78K-01	TTC39B	ENST00000380850.4,ENST00000512701.2,ENST00000507993.1,ENST00000355694.2,ENST00000297615.5,ENST00000380853.1,ENST00000507285.1	chr9	15177694:15177812:15182304:15182413:15185277:15185404,	15182305	15182413	15182308	15182308	Nonsense_Mutation	G	A	p.Q574*
BLCA	TCGA-UY-A78K-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926559	1926559	Nonsense_Mutation	C	A	p.E328*
BLCA	TCGA-UY-A78K-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926559	1926559	Nonsense_Mutation	C	A	p.E328*
BLCA	TCGA-UY-A78K-01	EPB41L1	ENST00000432603.1	chr20	34806800:34806884:34807682:34807766:34809785:34809856,34802294:34802362:34807682:34807766:34809785:34809856,	34807683	34807766	34807738	34807738	Nonsense_Mutation	C	G	p.S804*
BLCA	TCGA-UY-A78K-01	WDR54	ENST00000480089.1	chr2	74648885:74648943:74649246:74649502:74649996:74650059,	74649247	74649502	74649500	74649500	Nonsense_Mutation	C	T	p.Q74*
BLCA	TCGA-UY-A78K-01	WDR54	ENST00000493982.1,ENST00000426787.1,ENST00000348227.4,ENST00000469932.1	chr2	74648885:74648943:74649279:74649502:74649996:74650059,	74649280	74649502	74649500	74649500	Nonsense_Mutation	C	T	p.Q74*
BLCA	TCGA-UY-A78L-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118506410:118506975:118507472:118507664:118510955:118511032,	118507473	118507664	118507480	118507480	Nonsense_Mutation	C	G	p.S2166*
BLCA	TCGA-UY-A78L-01	P2RX2	ENST00000389110.3,ENST00000536121.1,ENST00000542301.1,ENST00000348800.5,ENST00000343948.4,ENST00000535910.1	chr12	133196043:133196160:133196264:133196336:133196429:133196505,	133196265	133196336	133196313	133196313	Nonsense_Mutation	C	T	p.Q120*
BLCA	TCGA-UY-A78L-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212241940:212242045:212245442:212245555:212251514:212251604,	212245443	212245555	212245552	212245552	Nonsense_Mutation	G	A	p.W344*
BLCA	TCGA-UY-A78L-01	GTF2H3	ENST00000537695.1,ENST00000543341.2,ENST00000536375.1,ENST00000537368.1	chr12	124118391:124118419:124123810:124123890:124130001:124130108,	124123811	124123890	124123888	124123888	Nonsense_Mutation	C	T	p.Q31*
BLCA	TCGA-UY-A78L-01	GTF2H3	ENST00000539994.1	chr12	124118391:124118419:124123840:124123890:124130001:124130108,	124123841	124123890	124123888	124123888	Nonsense_Mutation	C	T	p.Q31*
BLCA	TCGA-UY-A78L-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139945386:139945581:139945662:139945822:139945961:139946112,	139945663	139945822	139945802	139945802	Nonsense_Mutation	G	T	p.S136*
BLCA	TCGA-UY-A78M-01	ECM2	ENST00000444490.2	chr9	95274292:95274408:95276912:95277419:95279968:95280157,	95276913	95277419	95277072	95277072	Nonsense_Mutation	G	A	p.R299*
BLCA	TCGA-UY-A78M-01	ECM2	ENST00000344604.5	chr9	95274292:95274408:95276912:95277485:95279968:95280157,	95276913	95277485	95277072	95277072	Nonsense_Mutation	G	A	p.R299*
BLCA	TCGA-UY-A78N-01	BMP5	ENST00000370830.3,ENST00000446683.2	chr6	55638846:55639041:55659076:55659225:55684452:55684645,	55659077	55659225	55659208	55659208	Nonsense_Mutation	A	T	p.L234*
BLCA	TCGA-UY-A78N-01	PPARGC1A	ENST00000264867.2,ENST00000506055.1,ENST00000509702.1	chr4	23803846:23803968:23814369:23814490:23814643:23814748,	23814370	23814490	23814402	23814402	Nonsense_Mutation	T	A	p.K663*
BLCA	TCGA-UY-A78O-01	ZNF683	ENST00000403843.1,ENST00000436292.1	chr1	26688127:26688513:26688606:26688666:26689516:26689625,	26688607	26688666	26688638	26688638	Nonsense_Mutation	C	T	p.W391*
BLCA	TCGA-UY-A78O-01	PHF3	ENST00000481385.2,ENST00000515594.1,ENST00000509876.1,ENST00000393387.1,ENST00000506783.1,ENST00000262043.3	chr6	64401626:64401933:64404470:64404654:64408112:64408135,	64404471	64404654	64404646	64404646	Nonsense_Mutation	C	G	p.S891*
BLCA	TCGA-UY-A8OB-01	EIF3D	ENST00000541106.1,ENST00000405442.1,ENST00000216190.8	chr22	36912751:36912837:36913347:36913478:36914809:36914957,	36913348	36913478	36913461	36913461	Nonsense_Mutation	C	A	p.E293*
BLCA	TCGA-UY-A8OB-01	EIF3D	ENST00000458572.1	chr22	36912751:36912837:36913347:36913540:36914809:36914957,	36913348	36913540	36913461	36913461	Nonsense_Mutation	C	A	p.E293*
BLCA	TCGA-UY-A9PA-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19729451:19729499:19741813:19741896:19744801:19744860,	19741814	19741896	19741844	19741844	Nonsense_Mutation	G	A	p.Q253*
BLCA	TCGA-UY-A9PB-01	AGPS	ENST00000264167.4	chr2	178362416:178362493:178364345:178364458:178370233:178370303,	178364346	178364458	178364367	178364367	Nonsense_Mutation	C	T	p.Q462*
BLCA	TCGA-UY-A9PB-01	PCDH9	ENST00000377865.2,ENST00000544246.1	chr13	67205341:67205543:67477635:67477737:67799536:67802115,	67477636	67477737	67477695	67477695	Nonsense_Mutation	G	A	p.Q1027*
BLCA	TCGA-UY-A9PB-01	SNAP91	ENST00000439399.2,ENST00000518312.1,ENST00000369694.2,ENST00000521616.1,ENST00000428679.2,ENST00000521485.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1	chr6	84304092:84304200:84310989:84311157:84311303:84311318,	84310990	84311157	84311052	84311052	Nonsense_Mutation	G	C	p.S421*
BLCA	TCGA-UY-A9PB-01	SERPINA10	ENST00000261994.4	chr14	94754622:94754896:94756212:94756980:94759525:94759608,	94756213	94756980	94756828	94756828	Nonsense_Mutation	G	A	p.Q75*
BLCA	TCGA-UY-A9PB-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431143	36431143	Nonsense_Mutation	C	A	p.C272*
BLCA	TCGA-UY-A9PB-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288551	151288551	Nonsense_Mutation	G	C	p.S148*
BLCA	TCGA-UY-A9PB-01	ZC3H18	ENST00000569435.1,ENST00000301011.5,ENST00000567085.1	chr16	88653024:88653092:88664585:88664734:88665027:88665120,	88664586	88664734	88664598	88664598	Nonsense_Mutation	G	A	p.W234*
BLCA	TCGA-UY-A9PB-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214817934	214817934	Nonsense_Mutation	C	G	p.S1674*
BLCA	TCGA-UY-A9PD-01	VPS9D1	ENST00000389386.3	chr16	89783137:89783230:89785434:89785510:89787170:89787293,	89785435	89785510	89785447	89785447	Nonsense_Mutation	C	A	p.E55*
BLCA	TCGA-UY-A9PD-01	TPRG1	ENST00000433971.1	chr3	188889762:188889920:188925164:188925383:188933080:188933172,188850473:188850486:188925164:188925383:188933080:188933172,	188925165	188925383	188925178	188925178	Nonsense_Mutation	C	G	p.S2*
BLCA	TCGA-UY-A9PD-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379116	77379116	Nonsense_Mutation	C	A	p.S360*
BLCA	TCGA-UY-A9PD-01	XPOT	ENST00000332707.5	chr12	64829406:64829454:64833023:64833095:64838854:64838911,	64833024	64833095	64833039	64833039	Nonsense_Mutation	C	T	p.Q917*
BLCA	TCGA-UY-A9PE-01	ATXN2	ENST00000389154.3	chr12	111891480:111891649:111893832:111894060:111895017:111895163,111890557:111890644:111893832:111894060:111895017:111895163,	111893833	111894060	111893835	111893835	Nonsense_Mutation	G	A	p.Q1248*
BLCA	TCGA-UY-A9PE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577085	7577085	Nonsense_Mutation	C	A	p.E285*
BLCA	TCGA-UY-A9PE-01	ARIH2	ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000465217.1,ENST00000452385.1	chr3	49004638:49004708:49005966:49006088:49008027:49008077,	49005967	49006088	49006038	49006038	Nonsense_Mutation	G	T	p.E204*
BLCA	TCGA-UY-A9PE-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648704	85648704	Nonsense_Mutation	G	A	p.R541*
BLCA	TCGA-UY-A9PE-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77304814:77304891:77305240:77305568:77305708:77305818,	77305241	77305568	77305450	77305450	Nonsense_Mutation	C	A	p.E173*
BLCA	TCGA-UY-A9PE-01	TAX1BP1	ENST00000396319.2	chr7	27839583:27839709:27855967:27856139:27856508:27856657,	27855968	27856139	27856053	27856053	Nonsense_Mutation	C	G	p.S617*
BLCA	TCGA-UY-A9PE-01	UTP18	ENST00000583205.1,ENST00000225298.7	chr17	49371263:49371406:49374325:49374364:49375142:49375239,	49374326	49374364	49374340	49374340	Nonsense_Mutation	C	G	p.S554*
BLCA	TCGA-UY-A9PE-01	SPEG	ENST00000396698.1,ENST00000312358.7,ENST00000464989.1,ENST00000498378.1	chr2	220309766:220309883:220312695:220313993:220315857:220316001,	220312696	220313993	220313015	220313015	Nonsense_Mutation	G	T	p.E379*
BLCA	TCGA-UY-A9PE-01	ZDHHC6	ENST00000369405.3	chr10	114201949:114202109:114203272:114203364:114204927:114205408,	114203273	114203364	114203355	114203355	Nonsense_Mutation	G	A	p.Q93*
BLCA	TCGA-UY-A9PE-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926871	1926871	Nonsense_Mutation	C	A	p.E224*
BLCA	TCGA-UY-A9PE-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926871	1926871	Nonsense_Mutation	C	A	p.E224*
BLCA	TCGA-UY-A9PE-01	MEGF8	ENST00000251268.6	chr19	42852440:42852624:42853650:42853851:42854299:42854536,	42853651	42853851	42853768	42853768	Nonsense_Mutation	C	T	p.Q739*
BLCA	TCGA-UY-A9PE-01	SIGLEC10	ENST00000339313.5,ENST00000353836.5,ENST00000356298.5,ENST00000525998.1,ENST00000432469.2	chr19	51919919:51920204:51920335:51920719:51920798:51920965,	51920336	51920719	51920678	51920678	Nonsense_Mutation	C	A	p.E27*
BLCA	TCGA-UY-A9PE-01	UTRN	ENST00000367545.3	chr6	144898234:144898424:144999541:144999714:145021222:145021379,	144999542	144999714	144999632	144999632	Nonsense_Mutation	G	T	p.E2524*
BLCA	TCGA-UY-A9PF-01	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180904939	180904939	Nonsense_Mutation	C	T	p.Q632*
BLCA	TCGA-UY-A9PF-01	TPRG1	ENST00000433971.1	chr3	188889762:188889920:188925164:188925383:188933080:188933172,188850473:188850486:188925164:188925383:188933080:188933172,	188925165	188925383	188925348	188925348	Nonsense_Mutation	C	T	p.Q59*
BLCA	TCGA-UY-A9PF-01	CACNA1B	ENST00000277551.2,ENST00000371357.1,ENST00000371363.1,ENST00000371372.1,ENST00000277549.5,ENST00000371355.4	chr9	140852049:140852139:140865834:140866044:140870358:140870471,	140865835	140866044	140865958	140865958	Nonsense_Mutation	G	A	p.W486*
BLCA	TCGA-UY-A9PF-01	NIP7	ENST00000569637.2,ENST00000254941.6	chr16	69373732:69373788:69373908:69373995:69374096:69374235,	69373909	69373995	69373925	69373925	Nonsense_Mutation	C	T	p.Q25*
BLCA	TCGA-UY-A9PF-01	UBE4B	ENST00000377157.3,ENST00000343090.6	chr1	10093653:10093752:10132085:10132272:10155518:10155654,	10132086	10132272	10132131	10132131	Nonsense_Mutation	C	T	p.Q24*
BLCA	TCGA-UY-A9PF-01	EPS8	ENST00000543523.1,ENST00000543468.1,ENST00000546311.1,ENST00000543612.1,ENST00000535752.1,ENST00000281172.5	chr12	15822601:15822759:15823789:15823857:15834159:15834236,	15823790	15823857	15823804	15823804	Nonsense_Mutation	G	A	p.Q64*
BLCA	TCGA-UY-A9PF-01	RUSC1	ENST00000462780.1,ENST00000368349.4,ENST00000292254.4,ENST00000368347.4,ENST00000490373.1,ENST00000368354.3,ENST00000471876.1,ENST00000368352.5	chr1	155296793:155296923:155297940:155298066:155300193:155300520,	155297941	155298066	155298023	155298023	Nonsense_Mutation	C	T	p.Q833*
BLCA	TCGA-UY-A9PF-01	CLOCK	ENST00000309964.4,ENST00000381322.1,ENST00000513440.1	chr4	56319220:56319296:56319843:56319991:56322063:56322170,	56319844	56319991	56319883	56319883	Nonsense_Mutation	G	C	p.S364*
BLCA	TCGA-UY-A9PF-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31604873:31605410:31613127:31613315:31632522:31633189,	31613128	31613315	31613133	31613133	Nonsense_Mutation	G	A	p.Q363*
BLCA	TCGA-UY-A9PH-01	AOC1	ENST00000416793.2,ENST00000360937.4	chr7	150549606:150549646:150553542:150555128:150555850:150556136,	150553543	150555128	150555035	150555035	Nonsense_Mutation	G	T	p.E493*
BLCA	TCGA-UY-A9PH-01	ANKIB1	ENST00000265742.3	chr7	91948735:91948826:91957096:91957214:91972337:91972431,	91957097	91957214	91957103	91957103	Nonsense_Mutation	G	T	p.E226*
BLCA	TCGA-UY-A9PH-01	ADAMTS10	ENST00000597188.1,ENST00000270328.4	chr19	8662129:8662206:8665811:8666029:8668611:8668768,8662117:8662201:8665811:8666029:8668611:8668768,	8665812	8666029	8665955	8665955	Nonsense_Mutation	C	A	p.E223*
BLCA	TCGA-UY-A9PH-01	CA14	ENST00000369111.4	chr1	150235202:150235269:150235440:150235598:150235697:150235818,	150235441	150235598	150235593	150235593	Nonsense_Mutation	G	T	p.E239*
BLCA	TCGA-UY-A9PH-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BLCA	TCGA-UY-A9PH-01	TDRD9	ENST00000557332.1,ENST00000409874.4,ENST00000339063.5	chr14	104473496:104473541:104474749:104474803:104481061:104481178,	104474750	104474803	104474764	104474764	Nonsense_Mutation	G	A	p.W689*
BLCA	TCGA-UY-A9PH-01	TRABD2A	ENST00000409520.2,ENST00000409133.1	chr2	85068984:85069131:85097348:85097909:85108055:85108206,	85097349	85097909	85097728	85097728	Nonsense_Mutation	G	C	p.S97*
BLCA	TCGA-UY-A9PH-01	CYP4X1	ENST00000538609.1,ENST00000371901.3	chr1	47501477:47501605:47501688:47501843:47504331:47504438,	47501689	47501843	47501795	47501795	Nonsense_Mutation	C	T	p.Q243*
BLCA	TCGA-UY-A9PH-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800271	39800271	Nonsense_Mutation	C	T	p.Q2671*
BLCA	TCGA-UY-A9PH-01	SPPL2A	ENST00000558934.1,ENST00000261854.5	chr15	50999644:51000071:51012136:51012297:51014320:51014398,	51012137	51012297	51012139	51012139	Nonsense_Mutation	G	A	p.Q496*
BLCA	TCGA-UY-A9PH-01	SKA3	ENST00000314759.5,ENST00000298260.4	chr13	21728835:21729289:21732060:21732264:21734040:21734126,21729831:21729950:21732060:21732264:21734040:21734126,	21732061	21732264	21732242	21732242	Nonsense_Mutation	G	C	p.S313*
BLCA	TCGA-UY-A9PH-01	TMPO	ENST00000556029.1	chr12	98931252:98931350:98938007:98938127:98938219:98938315,	98938008	98938127	98938017	98938017	Nonsense_Mutation	C	T	p.Q225*
BLCA	TCGA-UY-A9PH-01	C20orf194	ENST00000498079.1,ENST00000252032.9,ENST00000453730.2	chr20	3277507:3277596:3278675:3278822:3285086:3285190,	3278676	3278822	3278776	3278776	Nonsense_Mutation	G	C	p.S610*
BLCA	TCGA-XF-A8HH-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579415	7579415	Nonsense_Mutation	C	T	p.W91*
BLCA	TCGA-XF-A8HI-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44913073:44913200:44918250:44918349:44918491:44918711,	44918251	44918349	44918259	44918259	Nonsense_Mutation	C	G	p.S295*
BLCA	TCGA-XF-A8HI-01	ZFYVE16	ENST00000338008.5,ENST00000512558.1,ENST00000505560.1,ENST00000510158.1	chr5	79741081:79741224:79743844:79744223:79745409:79745532,	79743845	79744223	79743932	79743932	Nonsense_Mutation	C	T	p.Q938*
BLCA	TCGA-XF-A9SG-01	CES3	ENST00000570236.1,ENST00000394037.1,ENST00000566746.1	chr16	66995205:66995292:66997081:66997286:66997393:66997524,	66997082	66997286	66997250	66997250	Nonsense_Mutation	G	A	p.W84*
BLCA	TCGA-XF-A9SI-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70956623:70956887:70960214:70960484:70963454:70963718,	70960215	70960484	70960368	70960368	Nonsense_Mutation	C	A	p.E1251*
BLCA	TCGA-XF-A9SI-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79581141	79581141	Nonsense_Mutation	G	C	p.S1034*
BLCA	TCGA-XF-A9SI-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48805816:48805947:48809720:48809854:48811029:48811129,	48809721	48809854	48809834	48809834	Nonsense_Mutation	G	C	p.S1162*
BLCA	TCGA-XF-A9SI-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123215229:123215378:123217270:123217399:123220396:123220620,	123217271	123217399	123217380	123217380	Nonsense_Mutation	C	T	p.R1012*
BLCA	TCGA-XF-A9SI-01	BNIP3	ENST00000368636.4,ENST00000540159.1	chr10	133784141:133784291:133784367:133784474:133786537:133786622,	133784368	133784474	133784416	133784416	Nonsense_Mutation	G	C	p.S114*
BLCA	TCGA-XF-A9SI-01	FANCB	ENST00000452869.1,ENST00000324138.3,ENST00000398334.1	chrX	14862624:14862862:14862977:14863408:14868626:14868796,	14862978	14863408	14863385	14863385	Nonsense_Mutation	G	C	p.S507*
BLCA	TCGA-XF-A9SI-01	TROAP	ENST00000547923.1	chr12	49724344:49724356:49724443:49724726:49724996:49725190,	49724444	49724726	49724691	49724691	Nonsense_Mutation	C	G	p.S688*
BLCA	TCGA-XF-A9SI-01	TROAP	ENST00000257909.3	chr12	49723645:49723774:49723927:49724726:49724996:49725190,	49723928	49724726	49724691	49724691	Nonsense_Mutation	C	G	p.S688*
BLCA	TCGA-XF-A9SI-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31604873:31605410:31613127:31613315:31632522:31633189,	31613128	31613315	31613289	31613289	Nonsense_Mutation	C	A	p.E311*
BLCA	TCGA-XF-A9SI-01	TCF4	ENST00000565908.2,ENST00000566514.1,ENST00000568169.1,ENST00000563686.1,ENST00000354452.3,ENST00000543082.1,ENST00000568147.1,ENST00000568673.1,ENST00000564343.1,ENST00000565018.2,ENST00000562847.1,ENST00000563888.2,ENST00000564999.1,ENST00000540999.1,ENST00000566286.1,ENST00000356073.4,ENST00000562543.1,ENST00000537578.1,ENST00000398339.1,ENST00000563824.1,ENST00000564403.2	chr18	53018197:53018234:53070684:53070749:53128249:53128346,	53070685	53070749	53070731	53070731	Nonsense_Mutation	G	T	p.S108*
BLCA	TCGA-XF-A9SI-01	UTP6	ENST00000261708.4,ENST00000477128.1	chr17	30205268:30205346:30205720:30205800:30207591:30207773,	30205721	30205800	30205746	30205746	Nonsense_Mutation	G	C	p.S341*
BLCA	TCGA-XF-A9SI-01	SLFN13	ENST00000532210.1,ENST00000526861.1,ENST00000530782.1,ENST00000542635.1,ENST00000360502.2,ENST00000533791.1,ENST00000285013.6,ENST00000534689.1	chr17	33769118:33769305:33770807:33770939:33771633:33771720,	33770808	33770939	33770879	33770879	Nonsense_Mutation	G	T	p.S376*
BLCA	TCGA-XF-A9SI-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904719	100904719	Nonsense_Mutation	C	A	p.Y81*
BLCA	TCGA-XF-A9SI-01	PIKFYVE	ENST00000392202.3	chr2	209136234:209136415:209138307:209138457:209150449:209150524,	209138308	209138457	209138367	209138367	Nonsense_Mutation	C	T	p.Q78*
BLCA	TCGA-XF-A9SI-01	NAP1L1	ENST00000535020.2,ENST00000550934.1,ENST00000551600.1,ENST00000552342.1,ENST00000547479.1,ENST00000393263.3,ENST00000549596.1,ENST00000551992.1,ENST00000261182.8,ENST00000547704.1	chr12	76461184:76461253:76462688:76462774:76478346:76478392,76461150:76461253:76462688:76462774:76467982:76468019,	76462689	76462774	76462752	76462752	Nonsense_Mutation	G	A	p.Q14*
BLCA	TCGA-XF-A9SJ-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039158	49039158	Nonsense_Mutation	G	T	p.E746*
BLCA	TCGA-XF-A9SJ-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257772	9257772	Nonsense_Mutation	G	T	p.E1503*
BLCA	TCGA-XF-A9SJ-01	VPS37B	ENST00000535765.1	chr12	123353026:123353109:123355436:123355602:123380498:123380674,	123355437	123355602	123355596	123355596	Nonsense_Mutation	G	A	p.Q42*
BLCA	TCGA-XF-A9SJ-01	MTA3	ENST00000405592.1,ENST00000407270.3,ENST00000406911.1,ENST00000406652.1,ENST00000405094.1,ENST00000454356.1,ENST00000409019.1	chr2	42797576:42797644:42836597:42836724:42867312:42867376,42806246:42806340:42836597:42836724:42867312:42867376,	42836598	42836724	42836606	42836606	Nonsense_Mutation	G	T	p.E11*
BLCA	TCGA-XF-A9SJ-01	IPO8	ENST00000544829.1,ENST00000256079.4	chr12	30789915:30790121:30792448:30792669:30802070:30802166,	30792449	30792669	30792627	30792627	Nonsense_Mutation	G	A	p.R771*
BLCA	TCGA-XF-A9SJ-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10093063:10093150:10094153:10094346:10096027:10096201,	10094154	10094346	10094307	10094307	Nonsense_Mutation	C	G	p.Y689*
BLCA	TCGA-XF-A9SK-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678881	73678881	Nonsense_Mutation	C	T	p.Q1742*
BLCA	TCGA-XF-A9SK-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204*
BLCA	TCGA-XF-A9SK-01	TRIM41	ENST00000503114.1,ENST00000351937.5	chr5	180661173:180661349:180661931:180661995:180662353:180662397,	180661932	180661995	180661962	180661962	Nonsense_Mutation	C	T	p.Q500*
BLCA	TCGA-XF-A9SK-01	ITGAL	ENST00000356798.6	chr16	30486833:30486901:30492759:30492905:30495147:30495285,30490651:30490782:30492759:30492905:30495147:30495280,	30492760	30492905	30492809	30492809	Nonsense_Mutation	C	G	p.S209*
BLCA	TCGA-XF-A9SL-01	CLSPN	ENST00000520551.1,ENST00000373220.3,ENST00000318121.3,ENST00000251195.5	chr1	36211051:36211163:36212366:36212593:36213507:36213662,	36212367	36212593	36212457	36212457	Nonsense_Mutation	G	A	p.Q922*
BLCA	TCGA-XF-A9SL-01	NFYA	ENST00000353205.5,ENST00000341376.6	chr6	41057942:41058048:41059266:41059433:41060650:41060824,	41059267	41059433	41059368	41059368	Nonsense_Mutation	C	T	p.Q217*
BLCA	TCGA-XF-A9SL-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256978	9256978	Nonsense_Mutation	C	G	p.S1238*
BLCA	TCGA-XF-A9SM-01	ADD1	ENST00000513762.1	chr4	2909556:2909571:2910241:2911158:2916610:2916767,	2910242	2911158	2910284	2910284	Nonsense_Mutation	C	T	p.Q520*
BLCA	TCGA-XF-A9SM-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000398123.2,ENST00000264758.7,ENST00000514940.1,ENST00000446856.1,ENST00000541051.1,ENST00000398125.1,ENST00000503455.2	chr4	2909556:2909571:2910241:2910331:2916610:2916767,	2910242	2910331	2910284	2910284	Nonsense_Mutation	C	T	p.Q520*
BLCA	TCGA-XF-A9SM-01	TP53I11	ENST00000532253.1,ENST00000308212.5,ENST00000528473.1,ENST00000533940.1,ENST00000395648.3,ENST00000525680.1	chr11	44956530:44956568:44957111:44957213:44958353:44958450,	44957112	44957213	44957160	44957160	Nonsense_Mutation	G	A	p.R130*
BLCA	TCGA-XF-A9SM-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56485189	56485189	Nonsense_Mutation	C	A	p.E1215*
BLCA	TCGA-XF-A9SM-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875893	27875893	Nonsense_Mutation	G	A	p.Q912*
BLCA	TCGA-XF-A9SM-01	MTMR3	ENST00000401950.2,ENST00000333027.3,ENST00000406629.1,ENST00000351488.3,ENST00000323630.5	chr22	30384468:30384551:30387492:30387659:30394749:30394846,	30387493	30387659	30387504	30387504	Nonsense_Mutation	C	G	p.S102*
BLCA	TCGA-XF-A9SP-01	MTOR	ENST00000376838.1,ENST00000361445.4	chr1	11184554:11184690:11186678:11186853:11187066:11187201,	11186679	11186853	11186835	11186835	Nonsense_Mutation	G	A	p.Q2124*
BLCA	TCGA-XF-A9SP-01	RAB34	ENST00000453384.3,ENST00000395242.2,ENST00000580843.2	chr17	27043060:27043076:27043920:27044012:27044230:27044309,27042846:27042919:27043920:27044012:27044230:27044309,27043070:27043079:27043920:27044012:27044230:27044309,	27043921	27044012	27044000	27044000	Nonsense_Mutation	C	A	p.E23*
BLCA	TCGA-XF-A9SP-01	L2HGDH	ENST00000555610.1,ENST00000421284.3,ENST00000555423.1,ENST00000267436.4	chr14	50768734:50768886:50769619:50769735:50778728:50778865,	50769620	50769735	50769707	50769707	Nonsense_Mutation	C	A	p.G57*
BLCA	TCGA-XF-A9ST-01	VCAM1	ENST00000370119.4,ENST00000347652.2,ENST00000294728.2	chr1	101196753:101197074:101197973:101198240:101200057:101200324,	101197974	101198240	101198219	101198219	Nonsense_Mutation	G	T	p.E591*
BLCA	TCGA-XF-A9ST-01	LDB2	ENST00000506732.1,ENST00000502640.1,ENST00000441778.2,ENST00000304523.5	chr4	16597325:16597498:16760780:16760883:16899976:16900001,	16760781	16760883	16760787	16760787	Nonsense_Mutation	G	A	p.R77*
BLCA	TCGA-XF-A9ST-01	SLC25A16	ENST00000265870.3	chr10	70248223:70248386:70252888:70252955:70263388:70263452,	70252889	70252955	70252893	70252893	Nonsense_Mutation	A	C	p.Y202*
BLCA	TCGA-XF-A9ST-01	RHOT1	ENST00000394692.2,ENST00000358365.3,ENST00000333942.6,ENST00000581031.1,ENST00000578205.1,ENST00000583994.1,ENST00000582602.1,ENST00000581094.1,ENST00000545287.2,ENST00000354266.3,ENST00000580392.1	chr17	30530955:30530992:30533928:30534048:30535125:30535328,	30533929	30534048	30533948	30533948	Nonsense_Mutation	C	A	p.S479*
BLCA	TCGA-XF-A9ST-01	PRDX4	ENST00000379341.4,ENST00000495599.1,ENST00000379349.1	chrX	23689645:23689763:23693106:23693223:23697281:23697325,	23693107	23693223	23693156	23693156	Nonsense_Mutation	G	T	p.E137*
BLCA	TCGA-XF-A9ST-01	PON1	ENST00000433729.1	chr7	94946045:94946101:94947634:94947705:94953713:94953788,	94947635	94947705	94947686	94947686	Nonsense_Mutation	G	A	p.R32*
BLCA	TCGA-XF-A9ST-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288236	74288236	Nonsense_Mutation	G	A	p.Q692*
BLCA	TCGA-XF-A9ST-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057172	115057172	Nonsense_Mutation	G	T	p.E251*
BLCA	TCGA-XF-A9ST-01	TMTC3	ENST00000266712.6	chr12	88566428:88566522:88568383:88568504:88569984:88570096,	88568384	88568504	88568405	88568405	Nonsense_Mutation	G	A	p.W407*
BLCA	TCGA-XF-A9ST-01	UPK1A	ENST00000222275.2	chr19	36157714:36157798:36159355:36159556:36164133:36164208,	36159356	36159556	36159435	36159435	Nonsense_Mutation	C	G	p.S55*
BLCA	TCGA-XF-A9ST-01	MVB12B	ENST00000361171.3,ENST00000436593.3	chr9	129154344:129154474:129157853:129157976:129184132:129184227,	129157854	129157976	129157882	129157882	Nonsense_Mutation	C	T	p.R190*
BLCA	TCGA-XF-A9ST-01	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43795964	43795964	Nonsense_Mutation	C	T	p.Q40*
BLCA	TCGA-XF-A9SX-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65349822	65349822	Nonsense_Mutation	G	A	p.W560*
BLCA	TCGA-XF-A9SY-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114840817:114841004:114842353:114842445:114860749:114860942,	114842354	114842445	114842402	114842402	Nonsense_Mutation	G	T	p.C506*
BLCA	TCGA-XF-A9SY-01	SEC63	ENST00000369002.4	chr6	108202352:108202454:108204191:108204350:108214685:108214859,	108204192	108204350	108204218	108204218	Nonsense_Mutation	C	A	p.E603*
BLCA	TCGA-XF-A9SY-01	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4,ENST00000417380.2	chr6	88313101:88313246:88315634:88315739:88317390:88317542,	88315635	88315739	88315679	88315679	Nonsense_Mutation	G	T	p.E123*
BLCA	TCGA-XF-A9SY-01	MAP4	ENST00000383737.4,ENST00000426837.2,ENST00000360240.6,ENST00000395734.3	chr3	47958359:47958664:47960208:47960331:47969717:47969792,47958377:47958664:47960208:47960331:47963254:47963368,	47960209	47960331	47960221	47960221	Nonsense_Mutation	G	A	p.Q231*
BLCA	TCGA-XF-A9SY-01	TXNDC15	ENST00000507024.1,ENST00000511070.1,ENST00000546290.1,ENST00000508779.1,ENST00000358387.4,ENST00000505174.1	chr5	134229315:134229345:134231983:134232114:134235178:134235253,	134231984	134232114	134232072	134232072	Nonsense_Mutation	C	T	p.R282*
BLCA	TCGA-XF-A9SY-01	TXNDC15	ENST00000509954.1	chr5	134229315:134229345:134231995:134232114:134235178:134235253,	134231996	134232114	134232072	134232072	Nonsense_Mutation	C	T	p.R282*
BLCA	TCGA-XF-A9SY-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728701	100728701	Nonsense_Mutation	C	G	p.S247*
BLCA	TCGA-XF-A9SY-01	LEO1	ENST00000315141.5	chr15	52254585:52254690:52257945:52258701:52263884:52263973,	52257946	52258701	52257978	52257978	Nonsense_Mutation	G	T	p.S261*
BLCA	TCGA-XF-A9SZ-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000470197.1,ENST00000409857.3	chr2	75900569:75900646:75907318:75907440:75914952:75915018,	75907319	75907440	75907339	75907339	Nonsense_Mutation	C	A	p.E598*
BLCA	TCGA-XF-A9SZ-01	TFCP2L1	ENST00000263707.5	chr2	122004393:122004546:122005739:122005846:122006557:122006663,	122005740	122005846	122005742	122005742	Nonsense_Mutation	G	A	p.Q168*
BLCA	TCGA-XF-A9SZ-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1,ENST00000338465.5	chr2	219411641:219411814:219414531:219414632:219418275:219418447,	219414532	219414632	219414542	219414542	Nonsense_Mutation	G	C	p.S140*
BLCA	TCGA-XF-A9SZ-01	CBWD3	ENST00000360171.6	chr9	70863721:70863813:70871836:70871896:70873447:70873485,	70871837	70871896	70871869	70871869	Nonsense_Mutation	G	T	p.E155*
BLCA	TCGA-XF-A9T0-01	ITCH	ENST00000374864.4,ENST00000262650.6,ENST00000486883.1	chr20	32996456:32996598:33000320:33000445:33001547:33001685,	33000321	33000445	33000425	33000425	Nonsense_Mutation	T	G	p.L106*
BLCA	TCGA-XF-A9T0-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95183081:95183213:95186024:95186224:95186329:95186488,	95186025	95186224	95186187	95186187	Nonsense_Mutation	A	T	p.Y207*
BLCA	TCGA-XF-A9T0-01	ERGIC1	ENST00000393784.3	chr5	172353511:172353572:172359438:172359539:172362190:172362313,	172359439	172359539	172359485	172359485	Nonsense_Mutation	T	G	p.Y196*
BLCA	TCGA-XF-A9T0-01	PPFIBP2	ENST00000299492.4,ENST00000527790.1	chr11	7570670:7570770:7586783:7586998:7614362:7614455,	7586784	7586998	7586921	7586921	Nonsense_Mutation	C	T	p.Q68*
BLCA	TCGA-XF-A9T0-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BLCA	TCGA-XF-A9T0-01	TXK	ENST00000264316.4,ENST00000510457.1	chr4	48091766:48091841:48096093:48096221:48097159:48097239,	48096094	48096221	48096193	48096193	Nonsense_Mutation	G	A	p.Q204*
BLCA	TCGA-XF-A9T0-01	SDCBP2	ENST00000360779.3,ENST00000381812.1,ENST00000381808.3,ENST00000339987.3	chr20	1292980:1293152:1293230:1293406:1293983:1294142,	1293231	1293406	1293283	1293283	Nonsense_Mutation	G	A	p.Q170*
BLCA	TCGA-XF-A9T0-01	FTO	ENST00000394647.3,ENST00000464071.1,ENST00000471389.1	chr16	53907697:53907777:53913755:53913899:53922743:53922863,	53913756	53913899	53913760	53913760	Nonsense_Mutation	C	G	p.S327*
BLCA	TCGA-XF-A9T0-01	MTFR1L	ENST00000472643.1,ENST00000424294.1,ENST00000374303.2,ENST00000526158.1,ENST00000374300.3,ENST00000524618.1,ENST00000374301.3,ENST00000464008.2,ENST00000478284.1	chr1	26152792:26152902:26153105:26153317:26156108:26156321,26152792:26152902:26153105:26153317:26155999:26156005,	26153106	26153317	26153136	26153136	Nonsense_Mutation	G	A	p.W90*
BLCA	TCGA-XF-A9T0-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210524	37210524	Nonsense_Mutation	C	T	p.Q269*
BLCA	TCGA-XF-A9T0-01	PIWIL1	ENST00000245255.3	chr12	130847535:130847689:130851677:130851803:130855720:130855868,	130851678	130851803	130851733	130851733	Nonsense_Mutation	C	T	p.Q751*
BLCA	TCGA-XF-A9T0-01	MEIS1	ENST00000272369.9,ENST00000407092.2,ENST00000488550.1,ENST00000560281.2	chr2	66662689:66663000:66664868:66665095:66666974:66667099,	66664869	66665095	66665001	66665001	Nonsense_Mutation	C	T	p.Q49*
BLCA	TCGA-XF-A9T0-01	TBCD	ENST00000571712.1,ENST00000576160.2	chr17	80818269:80818325:80828099:80828256:80842020:80842078,80772722:80772810:80828099:80828256:80842020:80842078,80816471:80816543:80828099:80828256:80842020:80842078,	80828100	80828256	80828222	80828222	Nonsense_Mutation	C	T	p.Q481*
BLCA	TCGA-XF-A9T0-01	PQLC1	ENST00000357575.4	chr18	77664140:77664183:77679183:77679400:77693968:77694016,77664140:77664183:77679183:77679400:77690227:77690311,77664140:77664183:77679183:77679400:77703328:77703462,	77679184	77679400	77679372	77679372	Nonsense_Mutation	C	T	p.W140*
BLCA	TCGA-XF-A9T2-01	ENGASE	ENST00000311595.9,ENST00000579016.1	chr17	77073748:77073946:77075570:77075719:77076288:77076446,	77075571	77075719	77075620	77075620	Nonsense_Mutation	C	T	p.Q156*
BLCA	TCGA-XF-A9T2-01	TAT	ENST00000355962.4	chr16	71603756:71603840:71604171:71604300:71604581:71604734,	71604172	71604300	71604297	71604297	Nonsense_Mutation	G	A	p.R306*
BLCA	TCGA-XF-A9T3-01	TXLNG	ENST00000398155.4,ENST00000380122.5	chrX	16855715:16855808:16857943:16858039:16859550:16862640,	16857944	16858039	16857987	16857987	Nonsense_Mutation	G	A	p.W399*
BLCA	TCGA-XF-A9T3-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924174	150924174	Nonsense_Mutation	G	A	p.Q2172*
BLCA	TCGA-XF-A9T3-01	RAB25	ENST00000473336.1,ENST00000487325.1	chr1	156035701:156035897:156038060:156038254:156039461:156039542,156031173:156031234:156038060:156038254:156039461:156039542,	156038061	156038254	156038131	156038131	Nonsense_Mutation	G	T	p.E104*
BLCA	TCGA-XF-A9T3-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000382788.3	chr4	3319765:3319778:3344663:3344780:3415798:3415968,3319765:3319778:3344663:3344780:3388142:3388164,	3344664	3344780	3344706	3344706	Nonsense_Mutation	C	T	p.Q642*
BLCA	TCGA-XF-A9T4-01	PRDM5	ENST00000264808.3,ENST00000502409.1	chr4	121737607:121737729:121737986:121738079:121739507:121739682,	121737987	121738079	121738036	121738036	Nonsense_Mutation	G	A	p.R232*
BLCA	TCGA-XF-A9T5-01	CCDC136	ENST00000297788.4	chr7	128454702:128454973:128455667:128455985:128457811:128457918,	128455668	128455985	128455857	128455857	Nonsense_Mutation	G	T	p.E1079*
BLCA	TCGA-XF-A9T5-01	DALRD3	ENST00000313778.5,ENST00000484831.1,ENST00000341949.4,ENST00000420952.2,ENST00000441576.2,ENST00000395462.4,ENST00000440857.1,ENST00000460505.1	chr3	49054866:49054946:49055045:49055302:49055455:49055466,	49055046	49055302	49055097	49055097	Nonsense_Mutation	C	A	p.E56*
BLCA	TCGA-XF-A9T5-01	LTBR	ENST00000228918.4,ENST00000539925.1	chr12	6496963:6497076:6497563:6497671:6497965:6497991,6495512:6495610:6497563:6497671:6497965:6497991,	6497564	6497671	6497640	6497640	Nonsense_Mutation	G	A	p.W248*
BLCA	TCGA-XF-A9T5-01	NCOA6	ENST00000374796.2,ENST00000471897.1,ENST00000359003.2	chr20	33302870:33303169:33315062:33315211:33320362:33320399,	33315063	33315211	33315093	33315093	Nonsense_Mutation	G	A	p.R2040*
BLCA	TCGA-XF-A9T5-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68140458:68140499:68145089:68145180:68150577:68150728,	68145090	68145180	68145142	68145142	Nonsense_Mutation	G	A	p.Q1110*
BLCA	TCGA-XF-A9T5-01	CLPB	ENST00000437826.2,ENST00000535990.1,ENST00000538021.1,ENST00000538039.1,ENST00000340729.5,ENST00000543042.1,ENST00000294053.3	chr11	72005065:72005170:72005368:72005488:72005663:72005737,	72005369	72005488	72005416	72005416	Nonsense_Mutation	C	A	p.E575*
BLCA	TCGA-XF-A9T5-01	SPIDR	ENST00000524033.1	chr8	48203641:48203726:48320422:48320523:48352884:48352959,48308935:48309186:48320422:48320523:48352884:48352959,48206455:48206619:48320422:48320523:48352884:48352959,	48320423	48320523	48320493	48320493	Nonsense_Mutation	C	T	p.Q283*
BLCA	TCGA-XF-A9T5-01	CD53	ENST00000271324.5	chr1	111436948:111437023:111437581:111437677:111441745:111441938,111436948:111437023:111437581:111437677:111439274:111439355,	111437582	111437677	111437634	111437634	Nonsense_Mutation	C	G	p.S127*
BLCA	TCGA-XF-A9T5-01	ZNF470	ENST00000391709.3,ENST00000330619.8,ENST00000601902.1	chr19	57081648:57081740:57085762:57085889:57086006:57086102,	57085763	57085889	57085884	57085884	Nonsense_Mutation	C	G	p.S61*
BLCA	TCGA-XF-A9T5-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3	chr10	34690753:34690845:34759012:34759191:34805906:34806087,34739244:34739376:34759012:34759191:34805906:34806087,	34759013	34759191	34759174	34759174	Nonsense_Mutation	G	A	p.R141*
BLCA	TCGA-XF-A9T5-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	7955118:7955412:8069683:8069992:8076452:8076562,	8069684	8069992	8069870	8069870	Nonsense_Mutation	C	G	p.S440*
BLCA	TCGA-XF-A9T5-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685658	51685658	Nonsense_Mutation	G	C	p.S411*
BLCA	TCGA-XF-A9T5-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151960100:151960215:151962122:151962294:151970789:151970952,	151962123	151962294	151962241	151962241	Nonsense_Mutation	G	A	p.Q356*
BLCA	TCGA-XF-A9T5-01	EML1	ENST00000262233.6,ENST00000334192.4	chr14	100259749:100259880:100317189:100317372:100331850:100331934,	100317190	100317372	100317292	100317292	Nonsense_Mutation	C	G	p.S57*
BLCA	TCGA-XF-A9T5-01	ZNF483	ENST00000358151.4	chr9	114296018:114296145:114296540:114296633:114338644:114340124,	114296541	114296633	114296573	114296573	Nonsense_Mutation	C	T	p.Q221*
BLCA	TCGA-XF-A9T5-01	NDC1	ENST00000371429.3,ENST00000540001.1,ENST00000537333.1,ENST00000234725.8	chr1	54262420:54262477:54262571:54262817:54266365:54266521,	54262572	54262817	54262803	54262803	Nonsense_Mutation	G	A	p.Q413*
BLCA	TCGA-XF-A9T5-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420803	49420803	Nonsense_Mutation	C	T	p.W4982*
BLCA	TCGA-XF-A9T6-01	RPRD2	ENST00000401000.4,ENST00000539519.1,ENST00000492220.1,ENST00000369068.4	chr1	150416726:150416853:150418701:150418877:150429763:150430046,	150418702	150418877	150418853	150418853	Nonsense_Mutation	C	A	p.Y256*
BLCA	TCGA-XF-A9T6-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216279559:216279681:216283964:216284108:216285395:216285524,	216283965	216284108	216284073	216284073	Nonsense_Mutation	G	A	p.Q571*
BLCA	TCGA-XF-A9T6-01	CDKL3	ENST00000435211.1,ENST00000265334.4,ENST00000523832.1,ENST00000521118.1,ENST00000523054.1	chr5	133657481:133657594:133685939:133686118:133695587:133695782,	133685940	133686118	133685984	133685984	Nonsense_Mutation	C	T	p.W165*
BLCA	TCGA-XF-A9T6-01	A2M	ENST00000542567.1,ENST00000318602.7	chr12	9231839:9231927:9232234:9232411:9232689:9232773,	9232235	9232411	9232356	9232356	Nonsense_Mutation	A	C	p.Y970*
BLCA	TCGA-XF-A9T6-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826912	133826912	Nonsense_Mutation	A	T	p.K321*
BLCA	TCGA-XF-A9T6-01	XRRA1	ENST00000527087.1	chr11	74574025:74574066:74617283:74617501:74618189:74618266,74563078:74563127:74617283:74617501:74618189:74618266,74562132:74562248:74617283:74617501:74618189:74618266,	74617284	74617501	74617440	74617440	Nonsense_Mutation	G	A	p.Q275*
BLCA	TCGA-XF-A9T6-01	CHRNA9	ENST00000310169.2	chr4	40337843:40337989:40339226:40339381:40350898:40351431,	40339227	40339381	40339277	40339277	Nonsense_Mutation	G	A	p.W87*
BLCA	TCGA-XF-A9T8-01	USP32	ENST00000590133.1,ENST00000592339.1,ENST00000300896.4	chr17	58288736:58288875:58289384:58289459:58290941:58291023,	58289385	58289459	58289433	58289433	Nonsense_Mutation	C	A	p.E711*
BLCA	TCGA-XF-A9T8-01	PLEKHB1	ENST00000539157.1,ENST00000540431.1	chr11	73360056:73360132:73361576:73361750:73362832:73362896,	73361577	73361750	73361616	73361616	Nonsense_Mutation	G	A	p.W38*
BLCA	TCGA-XF-A9T8-01	PLEKHB1	ENST00000535129.1,ENST00000541760.1,ENST00000541597.1,ENST00000535582.1,ENST00000398494.4,ENST00000227214.6,ENST00000398492.4,ENST00000543524.1,ENST00000545798.1,ENST00000546251.1,ENST00000538227.1,ENST00000542389.1,ENST00000354190.5	chr11	73360056:73360132:73361597:73361750:73362832:73362896,	73361598	73361750	73361616	73361616	Nonsense_Mutation	G	A	p.W38*
BLCA	TCGA-XF-A9T8-01	UBR1	ENST00000546274.2,ENST00000569066.1,ENST00000382177.2,ENST00000290650.4	chr15	43324765:43324829:43328375:43328477:43328725:43328791,	43328376	43328477	43328411	43328411	Nonsense_Mutation	C	A	p.E719*
BLCA	TCGA-XF-A9T8-01	DHX15	ENST00000336812.4	chr4	24572276:24572470:24577865:24578301:24585945:24586160,	24577866	24578301	24578092	24578092	Nonsense_Mutation	G	C	p.S94*
BLCA	TCGA-XF-A9T8-01	KLK10	ENST00000601467.1	chr19	51519265:51519412:51520365:51520546:51522298:51522395,51519252:51519412:51520365:51520546:51521710:51522105,	51520366	51520546	51520466	51520466	Nonsense_Mutation	G	A	p.Q57*
BLCA	TCGA-XF-A9T8-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49421090	49421090	Nonsense_Mutation	C	A	p.E4887*
BLCA	TCGA-XF-A9T8-01	PTPN2	ENST00000587703.1,ENST00000591115.1,ENST00000327283.3	chr18	12785683:12785843:12794382:12794484:12801968:12802150,	12794383	12794484	12794399	12794399	Nonsense_Mutation	C	A	p.E376*
BLCA	TCGA-XF-A9T8-01	CHKA	ENST00000533910.1,ENST00000356135.5,ENST00000528235.1,ENST00000265689.4	chr11	67833969:67833983:67836345:67836404:67837655:67837760,	67836346	67836404	67836402	67836402	Nonsense_Mutation	G	T	p.S291*
BLCA	TCGA-XF-A9T8-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000522380.2,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170351360:170351554:170380600:170380706:170395245:170395381,	170380601	170380706	170380672	170380672	Nonsense_Mutation	G	T	p.E514*
BLCA	TCGA-XF-A9T8-01	RUVBL1	ENST00000478892.1,ENST00000322623.5	chr3	127800096:127800252:127801325:127801417:127806548:127806638,	127801326	127801417	127801372	127801372	Nonsense_Mutation	C	A	p.E389*
BLCA	TCGA-XF-A9T8-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151877795:151879679:151880058:151880241:151882642:151882716,	151880059	151880241	151880090	151880090	Nonsense_Mutation	G	C	p.S1745*
BLCA	TCGA-XF-A9T8-01	ERC1	ENST00000538971.2,ENST00000592048.1,ENST00000543086.3,ENST00000440394.3,ENST00000347735.6	chr12	1213915:1213990:1219357:1219513:1225031:1225199,	1219358	1219513	1219412	1219412	Nonsense_Mutation	C	T	p.Q406*
BLCA	TCGA-XF-AAMF-01	ATF6	ENST00000367942.3	chr1	161751701:161751789:161753779:161753886:161761197:161761327,	161753780	161753886	161753803	161753803	Nonsense_Mutation	C	T	p.Q91*
BLCA	TCGA-XF-AAMG-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420049	49420049	Nonsense_Mutation	C	A	p.E5234*
BLCA	TCGA-XF-AAMG-01	SHMT2	ENST00000556825.1,ENST00000553324.1,ENST00000555563.1	chr12	57623541:57623594:57624585:57624783:57625263:57625343,57623953:57624027:57624585:57624783:57625263:57625343,57623522:57623594:57624585:57624783:57625495:57625568,	57624586	57624783	57624779	57624779	Nonsense_Mutation	C	G	p.S76*
BLCA	TCGA-XF-AAMG-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697728	17697728	Nonsense_Mutation	C	G	p.S489*
BLCA	TCGA-XF-AAMG-01	ANXA9	ENST00000368947.4	chr1	150960356:150960432:150960566:150960662:150960758:150960817,	150960567	150960662	150960608	150960608	Nonsense_Mutation	G	T	p.E247*
BLCA	TCGA-XF-AAMG-01	NF1	ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29663350:29663491:29663652:29663932:29664385:29664600,	29663653	29663932	29663713	29663713	Nonsense_Mutation	G	T	p.E2070*
BLCA	TCGA-XF-AAMG-01	CSNK1G3	ENST00000345990.4,ENST00000395411.1	chr5	122847953:122848264:122881110:122881535:122888800:122888841,	122881111	122881535	122881418	122881418	Nonsense_Mutation	C	T	p.R21*
BLCA	TCGA-XF-AAMG-01	BTN3A2	ENST00000524682.1	chr6	26368948:26369140:26370549:26370831:26373124:26373170,26368948:26369140:26370549:26370831:26373503:26373524,	26370550	26370831	26370723	26370723	Nonsense_Mutation	G	T	p.E203*
BLCA	TCGA-XF-AAMG-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554712.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53360093:53360145:53385840:53386074:53417129:53417286,	53385841	53386074	53386038	53386038	Nonsense_Mutation	C	T	p.W65*
BLCA	TCGA-XF-AAMG-01	RFTN1	ENST00000453536.1,ENST00000334133.4	chr3	16475357:16475544:16535231:16535384:16554948:16555029,	16535232	16535384	16535315	16535315	Nonsense_Mutation	G	C	p.S21*
BLCA	TCGA-XF-AAMG-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000467936.1,ENST00000265537.3	chr3	45559454:45559564:45561710:45561788:45565488:45565600,	45561711	45561788	45561759	45561759	Nonsense_Mutation	C	T	p.Q755*
BLCA	TCGA-XF-AAMG-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44820528:44820637:44833910:44833960:44870205:44870264,	44833911	44833960	44833957	44833957	Nonsense_Mutation	G	A	p.W127*
BLCA	TCGA-XF-AAMG-01	CATSPERD	ENST00000381614.2,ENST00000381624.3	chr19	5729882:5729955:5733866:5733981:5737148:5737216,	5733867	5733981	5733907	5733907	Nonsense_Mutation	C	A	p.S106*
BLCA	TCGA-XF-AAMG-01	APLP1	ENST00000587274.1	chr19	36367418:36367518:36368619:36368727:36368986:36369010,36367418:36367518:36368619:36368727:36369485:36369556,	36368620	36368727	36368637	36368637	Nonsense_Mutation	G	T	p.E488*
BLCA	TCGA-XF-AAMG-01	ZNF638	ENST00000493576.2	chr2	71654479:71654544:71658456:71658558:71660294:71660413,	71658457	71658558	71658555	71658555	Nonsense_Mutation	G	T	p.E1917*
BLCA	TCGA-XF-AAMG-01	DMXL1	ENST00000311085.8,ENST00000511622.1	chr5	118533513:118533651:118539013:118539131:118552595:118552682,	118539014	118539131	118539081	118539081	Nonsense_Mutation	C	T	p.Q2605*
BLCA	TCGA-XF-AAMG-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507267	74507267	Nonsense_Mutation	G	A	p.R450*
BLCA	TCGA-XF-AAMG-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000551627.1,ENST00000312777.5	chr12	110352246:110352432:110353207:110353351:110354395:110354515,	110353208	110353351	110353293	110353293	Nonsense_Mutation	C	G	p.S469*
BLCA	TCGA-XF-AAMG-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913933	129913933	Nonsense_Mutation	C	A	p.E247*
BLCA	TCGA-XF-AAMH-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	67004202:67004376:67008116:67008224:67012393:67012531,	67008117	67008224	67008197	67008197	Nonsense_Mutation	G	A	p.R1023*
BLCA	TCGA-XF-AAMH-01	TTC31	ENST00000424122.1,ENST00000442235.2,ENST00000233623.5,ENST00000464241.1,ENST00000459957.1,ENST00000463189.1,ENST00000410003.1	chr2	74717370:74717600:74717782:74717866:74718254:74718311,	74717783	74717866	74717852	74717852	Nonsense_Mutation	C	T	p.R178*
BLCA	TCGA-XF-AAML-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174815023	174815023	Nonsense_Mutation	C	T	p.Q163*
BLCA	TCGA-XF-AAML-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449333	155449333	Nonsense_Mutation	G	A	p.Q1110*
BLCA	TCGA-XF-AAML-01	DARS2	ENST00000361951.4,ENST00000239457.5,ENST00000471476.1	chr1	173814366:173814429:173819464:173819617:173822486:173822705,	173819465	173819617	173819576	173819576	Nonsense_Mutation	G	T	p.E435*
BLCA	TCGA-XF-AAML-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99328428:99328500:99347143:99347357:99353301:99353546,	99347144	99347357	99347212	99347212	Nonsense_Mutation	G	A	p.Q417*
BLCA	TCGA-XF-AAML-01	UMPS	ENST00000462091.1,ENST00000460034.1,ENST00000536109.1,ENST00000487622.1,ENST00000232607.2,ENST00000474588.1,ENST00000467167.1,ENST00000538242.1	chr3	124456977:124457086:124458870:124459046:124460998:124461113,	124458871	124459046	124458996	124458996	Nonsense_Mutation	G	T	p.E370*
BLCA	TCGA-XF-AAML-01	SMC1B	ENST00000357450.4	chr22	45741339:45741450:45745608:45745678:45748330:45748482,	45745609	45745678	45745647	45745647	Nonsense_Mutation	C	A	p.E1153*
BLCA	TCGA-XF-AAML-01	ARRDC3	ENST00000508948.1,ENST00000265138.3,ENST00000503192.1	chr5	90671343:90671430:90672437:90672585:90674510:90674592,	90672438	90672585	90672537	90672537	Nonsense_Mutation	C	T	p.W137*
BLCA	TCGA-XF-AAML-01	ICAM2	ENST00000449662.2,ENST00000578313.1,ENST00000579788.1,ENST00000579687.1,ENST00000412356.1,ENST00000578379.1,ENST00000418105.1,ENST00000583366.1,ENST00000584084.1	chr17	62081229:62081324:62082466:62082733:62083990:62084031,	62082467	62082733	62082629	62082629	Nonsense_Mutation	C	A	p.E56*
BLCA	TCGA-XF-AAML-01	PUM1	ENST00000524516.1,ENST00000257075.5,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3	chr1	31501642:31501711:31532050:31532424:31538462:31538523,	31532051	31532424	31532158	31532158	Nonsense_Mutation	G	A	p.Q86*
BLCA	TCGA-XF-AAML-01	PUM1	ENST00000526215.1,ENST00000525948.1	chr1	31501642:31501711:31532145:31532424:31538462:31538523,	31532146	31532424	31532158	31532158	Nonsense_Mutation	G	A	p.Q86*
BLCA	TCGA-XF-AAML-01	ACSF2	ENST00000427954.2,ENST00000300441.4	chr17	48538037:48538233:48538602:48538731:48538993:48539047,	48538603	48538731	48538699	48538699	Nonsense_Mutation	C	T	p.Q166*
BLCA	TCGA-XF-AAMQ-01	OPCML	ENST00000374778.4,ENST00000529038.1,ENST00000524381.1,ENST00000541867.1,ENST00000331898.7	chr11	132307115:132307253:132398954:132399080:132526981:132527214,	132398955	132399080	132399053	132399053	Nonsense_Mutation	G	C	p.S143*
BLCA	TCGA-XF-AAMQ-01	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71887224:71887323:71895919:71896000:71904347:71904430,	71895920	71896000	71895936	71895936	Nonsense_Mutation	G	C	p.S201*
BLCA	TCGA-XF-AAMW-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576891	7576891	Nonsense_Mutation	T	A	p.K319*
BLCA	TCGA-XF-AAMY-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39545138:39545297:39554965:39555110:39556132:39556212,	39554966	39555110	39555049	39555049	Nonsense_Mutation	G	A	p.R47*
BLCA	TCGA-XF-AAMY-01	C16orf70	ENST00000569626.1	chr16	67165188:67165232:67166348:67166814:67168070:67168168,	67166349	67166814	67166812	67166812	Nonsense_Mutation	G	T	p.E150*
BLCA	TCGA-XF-AAMY-01	RPL5	ENST00000370321.3,ENST00000315741.5	chr1	93300335:93300470:93301746:93301949:93303012:93303026,	93301747	93301949	93301834	93301834	Nonsense_Mutation	C	T	p.Q138*
BLCA	TCGA-XF-AAMZ-01	RHBDD1	ENST00000392062.2,ENST00000341329.3	chr2	227729345:227729842:227731901:227732034:227771508:227771597,	227731902	227732034	227732028	227732028	Nonsense_Mutation	C	A	p.S187*
BLCA	TCGA-XF-AAMZ-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62290563	62290563	Nonsense_Mutation	C	A	p.E339*
BLCA	TCGA-XF-AAMZ-01	PLEKHG7	ENST00000344636.3	chr12	93157816:93157970:93162758:93162856:93163863:93166231,	93162759	93162856	93162806	93162806	Nonsense_Mutation	C	T	p.R328*
BLCA	TCGA-XF-AAMZ-01	VSIG10	ENST00000536905.1	chr12	118520082:118520234:118533337:118533619:118540793:118540861,	118533338	118533619	118533470	118533470	Nonsense_Mutation	C	A	p.E77*
BLCA	TCGA-XF-AAN0-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154593	19154593	Nonsense_Mutation	G	C	p.S71*
BLCA	TCGA-XF-AAN0-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253542	55253542	Nonsense_Mutation	C	A	p.E565*
BLCA	TCGA-XF-AAN0-01	ZNF750	ENST00000572562.1	chr17	80787804:80788753:80788894:80789362:80797802:80797898,	80788895	80789362	80789145	80789145	Nonsense_Mutation	C	A	p.E396*
BLCA	TCGA-XF-AAN0-01	MX1	ENST00000455164.2,ENST00000398598.3,ENST00000398600.2,ENST00000288383.6	chr21	42823093:42823170:42824547:42824796:42830454:42831138,	42824548	42824796	42824620	42824620	Nonsense_Mutation	G	T	p.E528*
BLCA	TCGA-XF-AAN0-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091878	35091878	Nonsense_Mutation	C	T	p.W669*
BLCA	TCGA-XF-AAN0-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2	chr9	96214665:96214671:96233422:96233669:96238537:96238620,	96233423	96233669	96233438	96233438	Nonsense_Mutation	G	T	p.E164*
BLCA	TCGA-XF-AAN0-01	LMNB1	ENST00000504788.1,ENST00000512460.1,ENST00000261366.5,ENST00000460265.1	chr5	126156601:126156827:126158472:126158577:126161679:126161799,	126158473	126158577	126158476	126158476	Nonsense_Mutation	C	T	p.Q464*
BLCA	TCGA-XF-AAN0-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38418776:38418893:38420741:38421398:38430041:38430251,	38420742	38421398	38420831	38420831	Nonsense_Mutation	C	T	p.Q135*
BLCA	TCGA-XF-AAN0-01	TRIM73	ENST00000430211.1,ENST00000323819.3	chr7	75025029:75025084:75028199:75028616:75032927:75033023,	75028200	75028616	75028290	75028290	Nonsense_Mutation	G	T	p.E25*
BLCA	TCGA-XF-AAN0-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138602099	138602099	Nonsense_Mutation	G	T	p.S758*
BLCA	TCGA-XF-AAN0-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17746329	17746329	Nonsense_Mutation	C	G	p.S1347*
BLCA	TCGA-XF-AAN2-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150004840	150004840	Nonsense_Mutation	G	C	p.S462*
BLCA	TCGA-XF-AAN2-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881435	48881435	Nonsense_Mutation	G	T	p.E53*
BLCA	TCGA-XF-AAN2-01	KMT2E	ENST00000334914.7,ENST00000257745.4,ENST00000334884.5,ENST00000311117.3	chr7	104750743:104750815:104750923:104751049:104751217:104751314,	104750924	104751049	104750987	104750987	Nonsense_Mutation	C	G	p.S1303*
BLCA	TCGA-XF-AAN2-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39713791:39713815:39716469:39716684:39719640:39719695,	39716470	39716684	39716623	39716623	Nonsense_Mutation	G	C	p.S1173*
BLCA	TCGA-XF-AAN2-01	KIF21A	ENST00000547108.1	chr12	39713791:39713815:39715149:39716684:39719640:39719695,	39715150	39716684	39716623	39716623	Nonsense_Mutation	G	C	p.S1173*
BLCA	TCGA-XF-AAN2-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167855037:167855146:167855711:167855792:167857141:167857228,	167855712	167855792	167855779	167855779	Nonsense_Mutation	C	T	p.Q663*
BLCA	TCGA-XF-AAN2-01	GPS1	ENST00000580141.1,ENST00000578552.1,ENST00000584460.1,ENST00000355130.2,ENST00000320548.4,ENST00000306823.6,ENST00000392358.2	chr17	80012385:80012686:80012773:80012851:80013037:80013098,	80012774	80012851	80012789	80012789	Nonsense_Mutation	C	T	p.Q249*
BLCA	TCGA-XF-AAN2-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000369856.3,ENST00000422373.1,ENST00000420627.1	chrX	153579276:153579409:153579948:153580064:153580251:153580389,	153579949	153580064	153580035	153580035	Nonsense_Mutation	C	A	p.E2305*
BLCA	TCGA-XF-AAN2-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604251	111604251	Nonsense_Mutation	G	T	p.E443*
BLCA	TCGA-XF-AAN5-01	CORO1B	ENST00000393893.1,ENST00000341356.5	chr11	67207805:67207910:67208595:67208715:67208803:67208946,	67208596	67208715	67208697	67208697	Nonsense_Mutation	C	A	p.E219*
BLCA	TCGA-XF-AAN5-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000461538.1,ENST00000371001.2	chr20	58476716:58476865:58482418:58482479:58486804:58486900,	58482419	58482479	58482422	58482422	Nonsense_Mutation	C	A	p.E344*
BLCA	TCGA-XF-AAN5-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661446	230661446	Nonsense_Mutation	G	C	p.S1151*
BLCA	TCGA-XF-AAN5-01	SRSF5	ENST00000557460.1,ENST00000556587.1	chr14	70235329:70235391:70235514:70235968:70237183:70237257,	70235515	70235968	70235600	70235600	Nonsense_Mutation	C	T	p.R95*
BLCA	TCGA-XF-AAN5-01	SRSF5	ENST00000554021.1,ENST00000553635.1,ENST00000556184.1,ENST00000394366.2,ENST00000555547.1,ENST00000553521.1,ENST00000555349.1,ENST00000451983.2,ENST00000557154.1,ENST00000553369.1	chr14	70235329:70235391:70235514:70235613:70235898:70235968,	70235515	70235613	70235600	70235600	Nonsense_Mutation	C	T	p.R95*
BLCA	TCGA-XF-AAN5-01	ARPC2	ENST00000477992.1,ENST00000295685.10,ENST00000315717.5,ENST00000470146.1	chr2	219114086:219114187:219114543:219114644:219118613:219118831,	219114544	219114644	219114619	219114619	Nonsense_Mutation	G	T	p.E285*
BLCA	TCGA-XF-AAN5-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107592453:107592668:107593974:107594199:107595911:107596075,	107593975	107594199	107594154	107594154	Nonsense_Mutation	G	T	p.S991*
BLCA	TCGA-XF-AAN5-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123842415	123842415	Nonsense_Mutation	C	T	p.Q134*
BLCA	TCGA-XF-AAN5-01	KLHL7	ENST00000409689.1,ENST00000542558.1,ENST00000521082.1,ENST00000545443.1,ENST00000322231.7,ENST00000339077.5,ENST00000539124.1	chr7	23180387:23180563:23183469:23183644:23191685:23191828,	23183470	23183644	23183567	23183567	Nonsense_Mutation	C	G	p.S239*
BLCA	TCGA-XF-AAN5-01	BCAT1	ENST00000539780.1	chr12	25034234:25034345:25047208:25047409:25054747:25054819,25034234:25034345:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25054747:25054819,	25047209	25047409	25047231	25047231	Nonsense_Mutation	G	C	p.S86*
BLCA	TCGA-XF-AAN5-01	TGFBR1	ENST00000374994.4,ENST00000550253.1,ENST00000374990.2,ENST00000552516.1	chr9	101907013:101907170:101908766:101908891:101909935:101910066,	101908767	101908891	101908873	101908873	Nonsense_Mutation	C	T	p.R413*
BLCA	TCGA-XF-AAN5-01	NF1	ENST00000495910.2,ENST00000358273.4,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29553452:29553702:29554235:29554309:29554540:29554624,	29554236	29554309	29554250	29554250	Nonsense_Mutation	C	T	p.Q756*
BLCA	TCGA-XF-AAN7-01	TUBD1	ENST00000539018.1,ENST00000346141.6,ENST00000591548.1,ENST00000340993.6,ENST00000325752.3,ENST00000592426.1	chr17	57937682:57937785:57941024:57941208:57955463:57955637,57937682:57937785:57941024:57941208:57943969:57944110,	57941025	57941208	57941183	57941183	Nonsense_Mutation	A	C	p.Y367*
BLCA	TCGA-XF-AAN7-01	CIRBP	ENST00000588230.1,ENST00000589235.1,ENST00000587323.1,ENST00000586472.1,ENST00000585913.1,ENST00000589710.1,ENST00000588090.1,ENST00000586773.1,ENST00000591935.1,ENST00000590171.1,ENST00000585630.1,ENST00000588030.1,ENST00000591097.1,ENST00000589660.1,ENST00000586548.1,ENST00000589686.1,ENST00000320936.5,ENST00000586636.1,ENST00000585914.1,ENST00000587896.1	chr19	1271138:1271245:1271327:1271466:1271549:1271631,	1271328	1271466	1271439	1271439	Nonsense_Mutation	C	T	p.R55*
BLCA	TCGA-XF-AAN7-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67650647:67650781:67654599:67654720:67655344:67655494,	67654600	67654720	67654639	67654639	Nonsense_Mutation	G	T	p.E376*
BLCA	TCGA-XF-AAN7-01	RB1	ENST00000267163.4	chr13	49039340:49039504:49047495:49047526:49050836:49050979,	49047496	49047526	49047507	49047507	Nonsense_Mutation	C	A	p.S834*
BLCA	TCGA-YC-A8S6-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123210181:123210321:123211806:123211908:123215229:123215378,	123211807	123211908	123211873	123211873	Nonsense_Mutation	C	T	p.Q914*
BLCA	TCGA-YC-A8S6-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000427765.1,ENST00000277165.6	chr9	96312858:96312973:96318663:96318873:96320108:96320292,	96318664	96318873	96318698	96318698	Nonsense_Mutation	C	G	p.S770*
BLCA	TCGA-YC-A8S6-01	LCOR	ENST00000540664.1	chr10	98711859:98711953:98714709:98715591:98718168:98718272,	98714710	98715591	98715440	98715440	Nonsense_Mutation	G	T	p.E355*
BLCA	TCGA-YF-AA3L-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000413276.2,ENST00000473521.1,ENST00000412139.2,ENST00000579850.1,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000584619.1,ENST00000582887.1,ENST00000425406.1	chr7	86811562:86811653:86813712:86813941:86815144:86815491,	86813713	86813941	86813796	86813796	Nonsense_Mutation	C	T	p.Q36*
BLCA	TCGA-YF-AA3L-01	TTC29	ENST00000508306.1,ENST00000513335.1,ENST00000504425.1,ENST00000325106.4,ENST00000398886.4	chr4	147788649:147788735:147795867:147796080:147824695:147824881,	147795868	147796080	147796039	147796039	Nonsense_Mutation	G	A	p.Q236*
BLCA	TCGA-YF-AA3L-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84539663:84539711:84553852:84553964:84558860:84558999,	84553853	84553964	84553886	84553886	Nonsense_Mutation	C	T	p.Q332*
BLCA	TCGA-YF-AA3L-01	ATP8A1	ENST00000381668.5,ENST00000514372.1,ENST00000506602.1,ENST00000264449.10	chr4	42425633:42425722:42445581:42445689:42446594:42446651,	42445582	42445689	42445669	42445669	Nonsense_Mutation	C	T	p.W1012*
BLCA	TCGA-YF-AA3L-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123982616	123982616	Nonsense_Mutation	G	C	p.S1154*
BLCA	TCGA-YF-AA3L-01	TOP3A	ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18188455:18188621:18188720:18188834:18193870:18194000,	18188721	18188834	18188763	18188763	Nonsense_Mutation	T	A	p.K557*
BLCA	TCGA-YF-AA3L-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450711	85450711	Nonsense_Mutation	A	T	p.K714*
BLCA	TCGA-YF-AA3M-01	BCL2L11	ENST00000308659.8,ENST00000393256.3	chr2	111881626:111881716:111907620:111907724:111911356:111911466,111881626:111881716:111907620:111907724:111921709:111921808,	111907621	111907724	111907666	111907666	Nonsense_Mutation	G	A	p.W147*
BLCA	TCGA-YF-AA3M-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673331	186673331	Nonsense_Mutation	C	G	p.S6522*
BLCA	TCGA-YF-AA3M-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66096209:66096324:66135960:66136198:66188492:66188576,	66135961	66136198	66136030	66136030	Nonsense_Mutation	C	T	p.Q223*
BLCA	TCGA-YF-AA3M-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254968	9254968	Nonsense_Mutation	C	A	p.S568*
BLCA	TCGA-ZF-A9R0-01	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000538472.1,ENST00000420015.2	chr16	14702914:14702980:14704500:14704666:14711446:14711507,	14704501	14704666	14704555	14704555	Nonsense_Mutation	G	C	p.S167*
BLCA	TCGA-ZF-A9R0-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45874931	45874931	Nonsense_Mutation	G	C	p.S682*
BLCA	TCGA-ZF-A9R2-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623493	623493	Nonsense_Mutation	C	A	p.E287*
BLCA	TCGA-ZF-A9R2-01	RPN2	ENST00000237530.6,ENST00000456400.1,ENST00000373622.5	chr20	35858393:35858462:35860698:35860794:35862422:35862498,	35860699	35860794	35860769	35860769	Nonsense_Mutation	C	A	p.S551*
BLCA	TCGA-ZF-A9R2-01	HNRNPD	ENST00000503822.1,ENST00000543098.1,ENST00000352301.4	chr4	83279910:83279973:83280623:83280792:83292680:83292737,83279910:83279973:83280623:83280792:83294598:83294639,	83280624	83280792	83280673	83280673	Nonsense_Mutation	G	C	p.S137*
BLCA	TCGA-ZF-A9R3-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074778	31074778	Nonsense_Mutation	A	T	p.K360*
BLCA	TCGA-ZF-A9R3-01	PDCL	ENST00000259467.4	chr9	125585294:125585476:125588894:125589071:125590749:125590910,	125588895	125589071	125588973	125588973	Nonsense_Mutation	G	A	p.R32*
BLCA	TCGA-ZF-A9R3-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135777991:135778174:135779037:135779204:135779797:135779841,	135779038	135779204	135779172	135779172	Nonsense_Mutation	G	A	p.R692*
BLCA	TCGA-ZF-A9R4-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49419968	49419968	Nonsense_Mutation	G	A	p.Q5261*
BLCA	TCGA-ZF-A9R4-01	KMT2D	ENST00000301067.7	chr12	49421791:49421924:49422610:49422741:49422843:49423019,	49422611	49422741	49422719	49422719	Nonsense_Mutation	A	T	p.Y4758*
BLCA	TCGA-ZF-A9R4-01	BAZ2B	ENST00000437839.1,ENST00000355831.2,ENST00000392783.2	chr2	160304752:160304914:160310123:160310312:160335085:160335232,160304826:160304920:160310123:160310312:160335085:160335232,	160310124	160310312	160310286	160310286	Nonsense_Mutation	G	A	p.Q58*
BLCA	TCGA-ZF-A9R4-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72832607	72832607	Nonsense_Mutation	G	C	p.S1325*
BLCA	TCGA-ZF-A9R4-01	DPP10	ENST00000429914.1,ENST00000486885.1,ENST00000393147.2,ENST00000409163.1,ENST00000393146.2,ENST00000410059.1,ENST00000310323.8,ENST00000461250.1,ENST00000419287.1	chr2	116101392:116101488:116257085:116257180:116283473:116283548,	116257086	116257180	116257166	116257166	Nonsense_Mutation	G	T	p.E118*
BLCA	TCGA-ZF-A9R4-01	CLCN3	ENST00000515420.1	chr4	170616781:170616843:170618339:170618430:170618511:170618885,	170618340	170618430	170618377	170618377	Nonsense_Mutation	C	A	p.S352*
BLCA	TCGA-ZF-A9R4-01	ARID1B	ENST00000367148.1,ENST00000275248.4,ENST00000414678.2	chr6	157100566:157100605:157150360:157150555:157222509:157222659,	157150361	157150555	157150430	157150430	Nonsense_Mutation	C	T	p.Q538*
BLCA	TCGA-ZF-A9R5-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4,ENST00000412011.1	chr2	24521533:24521683:24522777:24523040:24524022:24524108,	24522778	24523040	24522981	24522981	Nonsense_Mutation	G	A	p.R381*
BLCA	TCGA-ZF-A9R7-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229584872:229584937:229586271:229586352:229588271:229588390,	229586272	229586352	229586337	229586337	Nonsense_Mutation	C	A	p.E1039*
BLCA	TCGA-ZF-A9R7-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663469	103663469	Nonsense_Mutation	G	C	p.S353*
BLCA	TCGA-ZF-A9R7-01	ATN1	ENST00000356654.4,ENST00000396684.2	chr12	7047007:7047230:7047643:7048340:7050042:7050186,	7047644	7048340	7047656	7047656	Nonsense_Mutation	G	T	p.E844*
BLCA	TCGA-ZF-A9R7-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50154457	50154457	Nonsense_Mutation	G	T	p.E271*
BLCA	TCGA-ZF-A9R7-01	LUZP4	ENST00000371920.3	chrX	114536556:114536688:114537864:114537983:114540769:114542119,	114537865	114537983	114537871	114537871	Nonsense_Mutation	C	G	p.S77*
BLCA	TCGA-ZF-A9R7-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2	chr11	9052304:9052472:9055172:9055343:9068902:9069109,	9055173	9055343	9055266	9055266	Nonsense_Mutation	C	A	p.E694*
BLCA	TCGA-ZF-A9R7-01	GINM1	ENST00000367419.5	chr6	149900969:149901126:149901728:149901859:149903575:149903739,	149901729	149901859	149901794	149901794	Nonsense_Mutation	G	T	p.E218*
BLCA	TCGA-ZF-A9R7-01	TTI2	ENST00000360742.5,ENST00000431156.2	chr8	33364746:33364839:33367263:33367450:33369484:33370230,	33367264	33367450	33367320	33367320	Nonsense_Mutation	G	A	p.Q260*
BLCA	TCGA-ZF-A9R7-01	XYLB	ENST00000207870.3,ENST00000542835.1,ENST00000424034.1	chr3	38407098:38407227:38408298:38408364:38409675:38409748,	38408299	38408364	38408354	38408354	Nonsense_Mutation	C	G	p.S188*
BLCA	TCGA-ZF-A9R7-01	PNCK	ENST00000411968.1	chrX	152937627:152937655:152938020:152938121:152938463:152938533,	152938021	152938121	152938058	152938058	Nonsense_Mutation	C	A	p.E55*
BLCA	TCGA-ZF-A9R7-01	PNCK	ENST00000458354.1,ENST00000488994.1,ENST00000370142.1,ENST00000422811.1,ENST00000466074.1,ENST00000393831.2,ENST00000419804.1,ENST00000447676.2,ENST00000434652.1,ENST00000463548.1,ENST00000488168.1,ENST00000370150.1,ENST00000340888.3,ENST00000465303.1,ENST00000425526.1,ENST00000439087.1,ENST00000475172.1,ENST00000370145.4,ENST00000489536.1	chrX	152937627:152937655:152938020:152938152:152938463:152938531,	152938021	152938152	152938058	152938058	Nonsense_Mutation	C	A	p.E55*
BLCA	TCGA-ZF-A9R7-01	PNCK	ENST00000472324.1	chrX	152937627:152937655:152938020:152938239:152938463:152938531,	152938021	152938239	152938058	152938058	Nonsense_Mutation	C	A	p.E55*
BLCA	TCGA-ZF-A9R7-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47838117:47838220:47841883:47842038:47845744:47845885,	47841884	47842038	47841934	47841934	Nonsense_Mutation	G	T	p.E2359*
BLCA	TCGA-ZF-A9R7-01	LCLAT1	ENST00000540623.1,ENST00000379509.3,ENST00000491680.2,ENST00000309052.4,ENST00000478015.1	chr2	30785011:30785158:30790925:30791042:30862982:30863696,	30790926	30791042	30790973	30790973	Nonsense_Mutation	C	T	p.Q225*
BLCA	TCGA-ZF-A9R7-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101300	27101300	Nonsense_Mutation	C	T	p.R1528*
BLCA	TCGA-ZF-A9R7-01	SENP7	ENST00000394091.1,ENST00000348610.3	chr3	101177798:101177896:101212716:101212812:101231934:101232028,	101212717	101212812	101212742	101212742	Nonsense_Mutation	G	C	p.S54*
BLCA	TCGA-ZF-A9R9-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000467200.2,ENST00000372023.3,ENST00000446994.2,ENST00000352431.2	chr20	45865069:45865260:45867639:45867882:45874751:45875261,	45867640	45867882	45867645	45867645	Nonsense_Mutation	G	C	p.S821*
BLCA	TCGA-ZF-A9R9-01	ZMYND8	ENST00000311275.7,ENST00000355972.4,ENST00000536340.1,ENST00000540497.1,ENST00000471951.2,ENST00000396281.4	chr20	45865069:45865260:45867501:45867882:45874751:45875261,	45867502	45867882	45867645	45867645	Nonsense_Mutation	G	C	p.S821*
BLCA	TCGA-ZF-A9R9-01	INSIG1	ENST00000340368.4	chr7	155090270:155090407:155094456:155094556:155099950:155100467,155093960:155094127:155094456:155094556:155099950:155100467,	155094457	155094556	155094506	155094506	Nonsense_Mutation	T	A	p.Y154*
BLCA	TCGA-ZF-A9R9-01	DHX15	ENST00000336812.4	chr4	24557873:24558033:24572276:24572470:24577865:24578301,	24572277	24572470	24572371	24572371	Nonsense_Mutation	G	A	p.Q203*
BLCA	TCGA-ZF-A9R9-01	PLA2G6	ENST00000335539.3,ENST00000402064.1,ENST00000332509.3,ENST00000479641.1	chr22	38536141:38536176:38539111:38539295:38541444:38541471,	38539112	38539295	38539189	38539189	Nonsense_Mutation	G	A	p.Q178*
BLCA	TCGA-ZF-A9R9-01	PMS2	ENST00000441476.2,ENST00000406569.3,ENST00000265849.7	chr7	6031603:6031688:6035164:6035264:6036956:6037054,	6035165	6035264	6035259	6035259	Nonsense_Mutation	G	T	p.S270*
BLCA	TCGA-ZF-A9R9-01	ATAD2	ENST00000521903.1	chr8	124359331:124359646:124360426:124360513:124361524:124361661,	124360427	124360513	124360435	124360435	Nonsense_Mutation	C	A	p.E629*
BLCA	TCGA-ZF-A9R9-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000517666.1,ENST00000521496.1	chr8	124359331:124359646:124360422:124360513:124361524:124361661,	124360423	124360513	124360435	124360435	Nonsense_Mutation	C	A	p.E629*
BLCA	TCGA-ZF-A9RC-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160268634:160268781:160268891:160269054:160275222:160275361,	160268892	160269054	160268936	160268936	Nonsense_Mutation	C	A	p.E596*
BLCA	TCGA-ZF-A9RC-01	TMEM63B	ENST00000371893.2,ENST00000323267.6,ENST00000533121.1,ENST00000259746.9	chr6	44117595:44117702:44117960:44118047:44118300:44118366,	44117961	44118047	44117968	44117968	Nonsense_Mutation	G	T	p.E510*
BLCA	TCGA-ZF-A9RC-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836783	82836783	Nonsense_Mutation	C	G	p.S2654*
BLCA	TCGA-ZF-A9RC-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580747	7580747	Nonsense_Mutation	C	T	p.Q1442*
BLCA	TCGA-ZF-A9RC-01	CLASP2	ENST00000480013.1,ENST00000468888.2,ENST00000461133.3,ENST00000359576.5,ENST00000399362.4,ENST00000539981.1,ENST00000307312.7	chr3	33543143:33543260:33552049:33552256:33557514:33557643,	33552050	33552256	33552169	33552169	Nonsense_Mutation	G	A	p.Q1407*
BLCA	TCGA-ZF-A9RC-01	SEC24D	ENST00000419654.2,ENST00000511481.1,ENST00000379735.5,ENST00000514561.1,ENST00000280551.6,ENST00000505134.1,ENST00000429811.2	chr4	119659415:119659534:119660303:119660442:119661817:119661963,	119660304	119660442	119660367	119660367	Nonsense_Mutation	G	A	p.Q773*
BLCA	TCGA-ZF-A9RC-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529467	219529467	Nonsense_Mutation	G	A	p.Q266*
BLCA	TCGA-ZF-A9RC-01	UXS1	ENST00000409032.1,ENST00000283148.7,ENST00000428048.2,ENST00000416298.1,ENST00000441952.1,ENST00000409501.3,ENST00000540130.1	chr2	106721249:106721293:106729101:106729221:106739425:106739547,	106729102	106729221	106729128	106729128	Nonsense_Mutation	G	A	p.Q285*
BLCA	TCGA-ZF-A9RC-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000447066.2	chr16	74505070:74505184:74506246:74506309:74508443:74508530,	74506247	74506309	74506261	74506261	Nonsense_Mutation	G	A	p.Q701*
BLCA	TCGA-ZF-A9RC-01	TFEC	ENST00000484212.1	chr7	115614223:115614310:115624315:115624567:115750761:115750980,	115624316	115624567	115624534	115624534	Nonsense_Mutation	G	A	p.Q78*
BLCA	TCGA-ZF-A9RC-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824434	114824434	Nonsense_Mutation	G	A	p.Q266*
BLCA	TCGA-ZF-A9RC-01	PTPRH	ENST00000376350.3,ENST00000588559.1	chr19	55711603:55711870:55713423:55713690:55715149:55715416,	55713424	55713690	55713439	55713439	Nonsense_Mutation	G	A	p.R380*
BLCA	TCGA-ZF-A9RD-01	LRRC36	ENST00000290940.7,ENST00000567723.1	chr16	67399206:67399258:67400919:67401360:67404846:67405145,67397492:67397617:67400919:67401360:67404846:67405145,	67400920	67401360	67400955	67400955	Nonsense_Mutation	C	T	p.R264*
BLCA	TCGA-ZF-A9RD-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436480	72436480	Nonsense_Mutation	C	T	p.Q234*
BLCA	TCGA-ZF-A9RE-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
BLCA	TCGA-ZF-A9RF-01	MYB	ENST00000526889.1,ENST00000526187.1,ENST00000442647.2,ENST00000529262.1,ENST00000528774.1	chr6	135514975:135515056:135515493:135515589:135516885:135517055,	135515494	135515589	135515530	135515530	Nonsense_Mutation	C	T	p.R294*
BLCA	TCGA-ZF-A9RF-01	MYB	ENST00000533384.1,ENST00000525940.1,ENST00000534121.1,ENST00000524588.1,ENST00000528015.1,ENST00000531737.1,ENST00000533837.1,ENST00000438901.2,ENST00000528343.1,ENST00000534044.1,ENST00000339290.5,ENST00000341911.5,ENST00000527615.1,ENST00000525002.1,ENST00000367814.4,ENST00000367812.2,ENST00000528140.1,ENST00000533808.1,ENST00000526320.1,ENST00000316528.8	chr6	135514975:135515056:135515493:135515598:135516885:135517055,	135515494	135515598	135515530	135515530	Nonsense_Mutation	C	T	p.R294*
BLCA	TCGA-ZF-A9RF-01	NMI	ENST00000243346.5	chr2	152131997:152132184:152132271:152132378:152135341:152135504,	152132272	152132378	152132274	152132274	Nonsense_Mutation	G	A	p.Q149*
BLCA	TCGA-ZF-A9RF-01	ZSWIM5	ENST00000359600.5	chr1	45506063:45506210:45508890:45509067:45516745:45516925,	45508891	45509067	45508984	45508984	Nonsense_Mutation	G	A	p.R506*
BLCA	TCGA-ZF-A9RF-01	ZFYVE16	ENST00000338008.5,ENST00000511829.1,ENST00000505560.1,ENST00000512907.1,ENST00000510158.1	chr5	79755257:79755313:79768579:79768742:79769572:79769678,	79768580	79768742	79768642	79768642	Nonsense_Mutation	C	T	p.Q1363*
BLCA	TCGA-ZF-A9RF-01	HSPA12B	ENST00000399701.1	chr20	3719310:3719364:3722930:3723055:3725548:3725735,	3722931	3723055	3723036	3723036	Nonsense_Mutation	G	T	p.E83*
BLCA	TCGA-ZF-A9RG-01	ZCWPW1	ENST00000490089.1,ENST00000490721.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100001800:100001867:100002635:100002716:100004316:100004421,	100002636	100002716	100002662	100002662	Nonsense_Mutation	G	A	p.Q409*
BLCA	TCGA-ZF-A9RG-01	TTF2	ENST00000463696.1,ENST00000369466.4	chr1	117637946:117637989:117638770:117638921:117639972:117640055,	117638771	117638921	117638919	117638919	Nonsense_Mutation	C	T	p.Q1062*
BLCA	TCGA-ZF-A9RL-01	CYFIP2	ENST00000519252.1,ENST00000523119.1,ENST00000517753.1,ENST00000522423.1,ENST00000523969.1,ENST00000519002.1,ENST00000520759.1,ENST00000520419.1,ENST00000442283.2,ENST00000519153.1	chr5	156714027:156714117:156721791:156721868:156723680:156723782,	156721792	156721868	156721804	156721804	Nonsense_Mutation	G	T	p.E74*
BLCA	TCGA-ZF-A9RL-01	FBXO44	ENST00000251547.5,ENST00000376768.1,ENST00000376762.4	chr1	11714966:11715009:11715862:11716157:11718323:11718421,	11715863	11716157	11716154	11716154	Nonsense_Mutation	G	T	p.E88*
BLCA	TCGA-ZF-A9RL-01	KLHDC10	ENST00000463413.1	chr7	129710611:129710649:129756284:129756506:129760588:129760609,	129756285	129756506	129756427	129756427	Nonsense_Mutation	G	A	p.W132*
BLCA	TCGA-ZF-A9RL-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39588502	39588502	Nonsense_Mutation	G	C	p.S296*
BLCA	TCGA-ZF-A9RL-01	RAB2A	ENST00000466595.1,ENST00000530071.1,ENST00000531289.1,ENST00000262646.7,ENST00000452437.1	chr8	61497281:61497374:61504416:61504528:61531138:61531207,	61504417	61504528	61504457	61504457	Nonsense_Mutation	G	T	p.E135*
BLCA	TCGA-ZF-A9RL-01	FRY	ENST00000380250.3	chr13	32698931:32699012:32705808:32705977:32709040:32709133,	32705809	32705977	32705945	32705945	Nonsense_Mutation	G	T	p.E285*
BLCA	TCGA-ZF-A9RL-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700405	149700405	Nonsense_Mutation	C	T	p.R452*
BLCA	TCGA-ZF-A9RL-01	PEX5	ENST00000412720.2,ENST00000266564.3,ENST00000434354.2,ENST00000455147.2,ENST00000420616.2	chr12	7354346:7354437:7354836:7354947:7355207:7355300,	7354837	7354947	7354882	7354882	Nonsense_Mutation	G	T	p.E230*
BLCA	TCGA-ZF-A9RM-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000233957.1	chr2	103003320:103003460:103006515:103006677:103010928:103011087,	103006516	103006677	103006643	103006643	Nonsense_Mutation	T	G	p.Y359*
BLCA	TCGA-ZF-A9RM-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670021	95670021	Nonsense_Mutation	A	T	p.Y555*
BLCA	TCGA-ZF-A9RN-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574021	7574021	Nonsense_Mutation	C	A	p.E336*
BLCA	TCGA-ZF-A9RN-01	SEPSECS	ENST00000302922.3,ENST00000514585.1,ENST00000382103.2,ENST00000358971.3	chr4	25146395:25146487:25146625:25146755:25153581:25153684,	25146626	25146755	25146650	25146650	Nonsense_Mutation	G	A	p.Q304*
BLCA	TCGA-ZF-A9RN-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363559	108363559	Nonsense_Mutation	C	T	p.Q564*
BLCA	TCGA-ZF-AA4N-01	TOMM40L	ENST00000545897.1,ENST00000465512.1	chr1	161197425:161197527:161197673:161197779:161197975:161198063,161197047:161197140:161197673:161197779:161197975:161198063,	161197674	161197779	161197699	161197699	Nonsense_Mutation	G	A	p.W135*
BLCA	TCGA-ZF-AA4N-01	PLD1	ENST00000356327.5	chr3	171395355:171395484:171405160:171405374:171406465:171406666,	171405161	171405374	171405266	171405266	Nonsense_Mutation	C	A	p.G550*
BLCA	TCGA-ZF-AA4N-01	RPAP2	ENST00000610020.1,ENST00000484158.1	chr1	92769840:92769906:92772744:92772833:92786155:92786191,	92772745	92772833	92772769	92772769	Nonsense_Mutation	C	T	p.Q142*
BLCA	TCGA-ZF-AA4R-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047530	125047530	Nonsense_Mutation	C	T	p.R767*
BLCA	TCGA-ZF-AA4R-01	ZSCAN20	ENST00000373413.2,ENST00000480917.1	chr1	33938260:33938292:33944779:33945306:33954064:33954251,	33944780	33945306	33944984	33944984	Nonsense_Mutation	C	G	p.S32*
BLCA	TCGA-ZF-AA4U-01	NUP210	ENST00000254508.5,ENST00000420141.2	chr3	13413333:13413532:13415217:13415373:13417003:13417141,	13415218	13415373	13415345	13415345	Nonsense_Mutation	C	T	p.W487*
BLCA	TCGA-ZF-AA4U-01	ACTR3B	ENST00000397282.2	chr7	152480271:152480327:152497615:152497740:152498705:152498816,152456913:152457011:152497615:152497740:152498705:152498816,	152497616	152497740	152497630	152497630	Nonsense_Mutation	G	T	p.E39*
BLCA	TCGA-ZF-AA4V-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37627766:37628016:37646809:37646986:37649003:37649143,	37646810	37646986	37646961	37646961	Nonsense_Mutation	C	T	p.Q695*
BLCA	TCGA-ZF-AA4V-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157521838:157522622:157524999:157525130:157527300:157530284,	157525000	157525130	157525063	157525063	Nonsense_Mutation	G	A	p.W1653*
BLCA	TCGA-ZF-AA4V-01	UBR2	ENST00000372899.1,ENST00000372901.1	chr6	42531799:42532135:42541471:42541731:42559888:42559967,	42541472	42541731	42541690	42541690	Nonsense_Mutation	T	A	p.C99*
BLCA	TCGA-ZF-AA4V-01	PRPF3	ENST00000324862.6	chr1	150298208:150298339:150300778:150300925:150305154:150305238,	150300779	150300925	150300860	150300860	Nonsense_Mutation	G	T	p.E120*
BLCA	TCGA-ZF-AA4V-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000528225.1,ENST00000532993.1,ENST00000356641.3	chr11	120312415:120312526:120312812:120312911:120316130:120316173,	120312813	120312911	120312888	120312888	Nonsense_Mutation	C	T	p.Q427*
BLCA	TCGA-ZF-AA4V-01	RPS19	ENST00000598742.1,ENST00000221975.2,ENST00000593863.1	chr19	42373237:42373284:42373768:42373823:42375418:42375484,	42373769	42373823	42373788	42373788	Nonsense_Mutation	C	T	p.Q126*
BLCA	TCGA-ZF-AA4V-01	IL12RB2	ENST00000541374.1,ENST00000441640.1,ENST00000371000.1,ENST00000262345.1,ENST00000544434.1	chr1	67793882:67794067:67795269:67795412:67796342:67796493,	67795270	67795412	67795343	67795343	Nonsense_Mutation	G	A	p.W246*
BLCA	TCGA-ZF-AA4V-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288629	151288629	Nonsense_Mutation	G	C	p.S122*
BLCA	TCGA-ZF-AA4V-01	SULT1B1	ENST00000512870.1	chr4	70620387:70620516:70620787:70620919:70626176:70626289,	70620788	70620919	70620790	70620790	Nonsense_Mutation	G	C	p.S49*
BLCA	TCGA-ZF-AA4V-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255264	156255264	Nonsense_Mutation	C	T	p.Q83*
BLCA	TCGA-ZF-AA4V-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255264	156255264	Nonsense_Mutation	C	T	p.Q83*
BLCA	TCGA-ZF-AA4V-01	RHEB	ENST00000262187.5,ENST00000478470.1,ENST00000472642.1,ENST00000496004.1,ENST00000470370.1	chr7	151174418:151174501:151181822:151181890:151188028:151188100,	151181823	151181890	151181846	151181846	Nonsense_Mutation	G	A	p.Q57*
BLCA	TCGA-ZF-AA4V-01	TP53BP2	ENST00000483398.1,ENST00000498843.1,ENST00000343537.7,ENST00000391879.2,ENST00000391878.2	chr1	223971816:223972016:223976709:223976876:223980090:223980224,	223976710	223976876	223976731	223976731	Nonsense_Mutation	G	A	p.Q919*
BLCA	TCGA-ZF-AA4V-01	FER	ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108233359:108233549:108281830:108281923:108290429:108290568,	108281831	108281923	108281874	108281874	Nonsense_Mutation	C	T	p.Q323*
BLCA	TCGA-ZF-AA4V-01	COG7	ENST00000307149.5	chr16	23445956:23446039:23453797:23453966:23456368:23456485,	23453798	23453966	23453807	23453807	Nonsense_Mutation	G	A	p.Q199*
BLCA	TCGA-ZF-AA4W-01	HPR	ENST00000561690.1,ENST00000540303.2,ENST00000566168.1	chr16	72097127:72097159:72107790:72107876:72108182:72108284,	72107791	72107876	72107850	72107850	Nonsense_Mutation	C	A	p.S22*
BLCA	TCGA-ZF-AA4W-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41245549	41245549	Nonsense_Mutation	G	A	p.Q371*
BLCA	TCGA-ZF-AA4W-01	WNK1	ENST00000537687.1	chr12	971400:971436:977031:978270:980430:980514,	977032	978270	978034	978034	Nonsense_Mutation	G	T	p.E1048*
BLCA	TCGA-ZF-AA4W-01	CPNE1	ENST00000412056.1,ENST00000430570.1,ENST00000317677.5,ENST00000414664.1,ENST00000401607.2,ENST00000486021.1,ENST00000483359.1,ENST00000397442.1,ENST00000317619.3,ENST00000352393.4,ENST00000483495.1,ENST00000397446.1,ENST00000397443.1,ENST00000437340.1,ENST00000397445.1	chr20	34218904:34218956:34219035:34219095:34219189:34219276,	34219036	34219095	34219050	34219050	Nonsense_Mutation	G	A	p.Q283*
BLCA	TCGA-ZF-AA4W-01	GPRC6A	ENST00000530250.1,ENST00000368549.3	chr6	117128057:117128369:117130476:117130780:117149982:117150198,	117130477	117130780	117130529	117130529	Nonsense_Mutation	G	C	p.S149*
BLCA	TCGA-ZF-AA4W-01	SHKBP1	ENST00000595803.1,ENST00000599575.1,ENST00000595945.1,ENST00000600718.1,ENST00000599716.1,ENST00000600733.1	chr19	41082821:41082891:41083136:41083190:41083301:41083347,	41083137	41083190	41083167	41083167	Nonsense_Mutation	G	A	p.W39*
BLCA	TCGA-ZF-AA4X-01	GOLGA2	ENST00000609374.1,ENST00000421699.2	chr9	131020068:131020171:131020258:131020477:131020733:131020849,	131020259	131020477	131020360	131020360	Nonsense_Mutation	G	A	p.Q776*
BLCA	TCGA-ZF-AA4X-01	RBM17	ENST00000446108.1,ENST00000379888.4	chr10	6154172:6154324:6155470:6155544:6156011:6156110,	6155471	6155544	6155492	6155492	Nonsense_Mutation	C	G	p.S293*
BLCA	TCGA-ZF-AA4X-01	LRCH3	ENST00000441090.2,ENST00000414675.2	chr3	197559067:197559188:197562544:197562609:197566191:197566268,	197562545	197562609	197562592	197562592	Nonsense_Mutation	G	T	p.E384*
BLCA	TCGA-ZF-AA4X-01	LRCH3	ENST00000536618.1,ENST00000438796.2,ENST00000425562.2,ENST00000334859.4	chr3	197559067:197559188:197562544:197562693:197566191:197566268,	197562545	197562693	197562592	197562592	Nonsense_Mutation	G	T	p.E384*
BLCA	TCGA-ZF-AA4X-01	FGL1	ENST00000518650.1,ENST00000398056.2,ENST00000427924.1,ENST00000522444.1,ENST00000398054.1,ENST00000381841.2,ENST00000523097.1,ENST00000381840.2	chr8	17731527:17731625:17731870:17732030:17739507:17739674,	17731871	17732030	17731905	17731905	Nonsense_Mutation	G	A	p.Q124*
BLCA	TCGA-ZF-AA4X-01	RAD23A	ENST00000586375.1	chr19	13059502:13059627:13060088:13060222:13063502:13063634,	13060089	13060222	13060211	13060211	Nonsense_Mutation	C	T	p.Q268*
BLCA	TCGA-ZF-AA4X-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735905	155735905	Nonsense_Mutation	G	C	p.S1120*
BLCA	TCGA-ZF-AA4X-01	TCAIM	ENST00000342649.4,ENST00000412611.2,ENST00000417768.1,ENST00000417237.1	chr3	44409023:44409200:44434346:44434469:44437891:44437989,	44434347	44434469	44434460	44434460	Nonsense_Mutation	C	G	p.S229*
BLCA	TCGA-ZF-AA4X-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670762	13670762	Nonsense_Mutation	C	T	p.Q938*
BLCA	TCGA-ZF-AA4X-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114257	57114257	Nonsense_Mutation	G	A	p.Q353*
BLCA	TCGA-ZF-AA4X-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114257	57114257	Nonsense_Mutation	G	A	p.Q353*
BLCA	TCGA-ZF-AA4X-01	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11236802:11236935:11346483:11346739:11364807:11365002,	11346484	11346739	11346602	11346602	Nonsense_Mutation	G	A	p.R504*
BLCA	TCGA-ZF-AA4X-01	LDLR	ENST00000558013.1,ENST00000545707.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1,ENST00000455727.2,ENST00000535915.1	chr19	11226769:11226888:11227534:11227674:11230767:11230909,	11227535	11227674	11227586	11227586	Nonsense_Mutation	C	G	p.S586*
BLCA	TCGA-ZF-AA4X-01	MCF2L	ENST00000375604.2,ENST00000421756.1,ENST00000375597.4,ENST00000535094.2,ENST00000475524.1,ENST00000397030.1,ENST00000434480.2,ENST00000375601.3,ENST00000423482.2,ENST00000375608.3,ENST00000442652.2	chr13	113720359:113720484:113724372:113724487:113728757:113728877,	113724373	113724487	113724431	113724431	Nonsense_Mutation	C	T	p.Q347*
BLCA	TCGA-ZF-AA4X-01	THBS3	ENST00000457183.2,ENST00000541576.1,ENST00000368378.3,ENST00000541990.1,ENST00000469769.1	chr1	155165635:155165690:155165777:155165917:155166831:155167000,	155165778	155165917	155165787	155165787	Nonsense_Mutation	G	A	p.R935*
BLCA	TCGA-ZF-AA4X-01	CCNL2	ENST00000497013.1,ENST00000488340.1,ENST00000481223.2,ENST00000496007.1,ENST00000400809.3,ENST00000408918.4,ENST00000425598.2	chr1	1330816:1330894:1333612:1333722:1333976:1334051,	1333613	1333722	1333715	1333715	Nonsense_Mutation	G	T	p.S124*
BLCA	TCGA-ZF-AA4X-01	BICC1	ENST00000373886.3	chr10	60548129:60548183:60549021:60549216:60549441:60549693,	60549022	60549216	60549193	60549193	Nonsense_Mutation	C	T	p.Q258*
BLCA	TCGA-ZF-AA4X-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579485	7579485	Nonsense_Mutation	C	A	p.E68*
BLCA	TCGA-ZF-AA4X-01	BPHL	ENST00000434640.1,ENST00000424847.2,ENST00000380379.5,ENST00000380375.3	chr6	3129278:3129432:3137595:3137727:3140619:3140743,	3137596	3137727	3137618	3137618	Nonsense_Mutation	G	A	p.W168*
BLCA	TCGA-ZF-AA4X-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735084	155735084	Nonsense_Mutation	G	A	p.Q1394*
BLCA	TCGA-ZF-AA4X-01	MDM2	ENST00000348801.2,ENST00000428863.2	chr12	69207338:69207408:69229608:69229764:69233053:69233629,69203006:69203072:69229608:69229764:69233053:69233062,	69229609	69229764	69229748	69229748	Nonsense_Mutation	C	G	p.S275*
BLCA	TCGA-ZF-AA51-01	KAT6A	ENST00000418721.1,ENST00000265713.2,ENST00000406337.1,ENST00000396930.3	chr8	41798359:41798962:41800310:41800518:41801265:41801497,	41800311	41800518	41800466	41800466	Nonsense_Mutation	G	A	p.Q761*
BLCA	TCGA-ZF-AA51-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
BLCA	TCGA-ZF-AA51-01	DNAJC3	ENST00000376795.6,ENST00000602402.1	chr13	96416086:96416207:96438192:96438325:96439260:96439409,	96438193	96438325	96438198	96438198	Nonsense_Mutation	C	T	p.Q361*
BLCA	TCGA-ZF-AA51-01	OSBPL3	ENST00000352860.1,ENST00000431825.2,ENST00000353930.1	chr7	24911601:24911688:24931995:24932240:25019504:25019760,	24931996	24932240	24932039	24932039	Nonsense_Mutation	G	C	p.S18*
BLCA	TCGA-ZF-AA51-01	CHN2	ENST00000474070.1,ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000546235.1	chr7	29437988:29438102:29440158:29440444:29519894:29519972,	29440159	29440444	29440302	29440302	Nonsense_Mutation	C	G	p.S145*
BLCA	TCGA-ZF-AA51-01	OSTM1	ENST00000193322.3,ENST00000440575.2	chr6	108370456:108370622:108372234:108372402:108375693:108375791,	108372235	108372402	108372309	108372309	Nonsense_Mutation	C	A	p.E237*
BLCA	TCGA-ZF-AA51-01	PNCK	ENST00000370142.1,ENST00000466074.1,ENST00000472324.1,ENST00000393831.2,ENST00000447676.2,ENST00000340888.3,ENST00000370145.4	chrX	152935187:152935581:152935904:152936049:152936198:152936269,152935474:152935585:152935904:152936049:152936198:152936269,	152935905	152936049	152935946	152935946	Nonsense_Mutation	G	C	p.S356*
BLCA	TCGA-ZF-AA51-01	NELL2	ENST00000452445.2,ENST00000333837.4,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	44917136:44917267:44926363:44926504:45000951:45001047,	44926364	44926504	44926496	44926496	Nonsense_Mutation	C	A	p.E558*
BLCA	TCGA-ZF-AA51-01	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3	chr10	124333230:124333278:124335914:124336238:124337326:124337356,	124335915	124336238	124336080	124336080	Nonsense_Mutation	C	G	p.S150*
BLCA	TCGA-ZF-AA51-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100327812:100327979:100329941:100330145:100335955:100336137,	100329942	100330145	100330038	100330038	Nonsense_Mutation	C	G	p.S186*
BLCA	TCGA-ZF-AA51-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878715	89878715	Nonsense_Mutation	G	A	p.Q36*
BLCA	TCGA-ZF-AA51-01	MUC1	ENST00000337604.5,ENST00000338684.5,ENST00000438413.1,ENST00000368390.3,ENST00000457295.2,ENST00000462317.1,ENST00000462215.1,ENST00000368395.1,ENST00000368392.3	chr1	155160038:155160052:155160197:155160334:155160638:155160688,155160038:155160052:155160197:155160334:155160483:155160488,	155160198	155160334	155160209	155160209	Nonsense_Mutation	G	C	p.S357*
BLCA	TCGA-ZF-AA51-01	SPATA17	ENST00000471021.1	chr1	217975059:217975192:218036115:218036198:218040219:218040930,	218036116	218036198	218036153	218036153	Nonsense_Mutation	C	G	p.S348*
BLCA	TCGA-ZF-AA51-01	HPX	ENST00000533856.1,ENST00000533369.1,ENST00000525057.1,ENST00000265983.3	chr11	6459708:6459739:6461394:6461516:6461696:6461756,	6461395	6461516	6461461	6461461	Nonsense_Mutation	C	T	p.W90*
BLCA	TCGA-ZF-AA51-01	PTPN6	ENST00000542277.1,ENST00000543115.1,ENST00000536521.1,ENST00000541698.1,ENST00000318974.9,ENST00000538715.1,ENST00000456013.1	chr12	7055872:7055902:7060771:7060894:7061145:7061340,7055872:7055902:7060771:7060894:7061275:7061340,7060537:7060683:7060771:7060894:7061145:7061340,	7060772	7060894	7060782	7060782	Nonsense_Mutation	C	T	p.R7*
BLCA	TCGA-ZF-AA51-01	PTPN6	ENST00000538318.1	chr12	7055872:7055902:7060667:7060894:7061145:7061340,	7060668	7060894	7060782	7060782	Nonsense_Mutation	C	T	p.R7*
BLCA	TCGA-ZF-AA51-01	ST13	ENST00000216218.3,ENST00000455824.1	chr22	41226882:41226960:41228572:41228675:41231563:41231674,	41228573	41228675	41228587	41228587	Nonsense_Mutation	C	A	p.E223*
BLCA	TCGA-ZF-AA51-01	TARDBP	ENST00000473118.1,ENST00000473869.1,ENST00000240185.3,ENST00000315091.3	chr1	11073972:11074022:11076900:11077064:11078789:11078930,	11076901	11077064	11076934	11076934	Nonsense_Mutation	C	A	p.S91*
BLCA	TCGA-ZF-AA51-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5402280:5402456:5410005:5410995:5413685:5414112,	5410006	5410995	5410927	5410927	Nonsense_Mutation	G	A	p.Q1100*
BLCA	TCGA-ZF-AA52-01	RTCA	ENST00000370128.4	chr1	100732079:100732180:100733707:100733851:100736112:100736236,	100733708	100733851	100733739	100733739	Nonsense_Mutation	C	T	p.R60*
BLCA	TCGA-ZF-AA52-01	RTCA	ENST00000498617.1	chr1	100732079:100732180:100733629:100733851:100736112:100736236,	100733630	100733851	100733739	100733739	Nonsense_Mutation	C	T	p.R60*
BLCA	TCGA-ZF-AA53-01	HIRIP3	ENST00000279392.3	chr16	30004969:30005129:30005226:30006164:30006423:30006538,	30005227	30006164	30005886	30005886	Nonsense_Mutation	C	A	p.E194*
BLCA	TCGA-ZF-AA53-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579406	Nonsense_Mutation	G	C	p.S94*
BLCA	TCGA-ZF-AA53-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551329	165551329	Nonsense_Mutation	G	C	p.S858*
BLCA	TCGA-ZF-AA53-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551329	165551329	Nonsense_Mutation	G	C	p.S858*
BLCA	TCGA-ZF-AA54-01	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25982350:25982514:25990451:25990595:25991610:25991737,	25990452	25990595	25990523	25990523	Nonsense_Mutation	G	C	p.S235*
BLCA	TCGA-ZF-AA54-01	CNIH4	ENST00000366856.3,ENST00000465271.1	chr1	224548196:224548265:224553580:224553693:224563496:224563700,224548196:224548265:224553580:224553693:224558984:224558999,	224553581	224553693	224553636	224553636	Nonsense_Mutation	C	G	p.S65*
BLCA	TCGA-ZF-AA54-01	CGN	ENST00000271636.7	chr1	151502964:151503222:151504877:151505048:151506450:151506612,	151504878	151505048	151504962	151504962	Nonsense_Mutation	G	T	p.E886*
BLCA	TCGA-ZF-AA54-01	CTBP2	ENST00000411419.2,ENST00000531469.1,ENST00000337195.5	chr10	126692032:126692061:126727565:126727724:126822080:126822181,126692032:126692061:126727565:126727724:126799558:126799662,	126727566	126727724	126727602	126727602	Nonsense_Mutation	T	A	p.K8*
BLCA	TCGA-ZF-AA54-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577079	7577079	Nonsense_Mutation	C	A	p.E287*
BLCA	TCGA-ZF-AA54-01	FMNL3	ENST00000293590.5,ENST00000352151.5,ENST00000550488.1,ENST00000335154.5	chr12	50047507:50047657:50047974:50048085:50048692:50048767,	50047975	50048085	50048043	50048043	Nonsense_Mutation	C	A	p.E335*
BLCA	TCGA-ZF-AA54-01	KIAA1211	ENST00000503618.1,ENST00000504228.1,ENST00000264229.6	chr4	57138569:57138658:57164379:57164515:57173700:57173731,	57164380	57164515	57164478	57164478	Nonsense_Mutation	C	G	p.S28*
BLCA	TCGA-ZF-AA54-01	C1QBP	ENST00000574444.1,ENST00000570805.1,ENST00000225698.4	chr17	5336988:5337087:5338192:5338286:5341442:5341593,	5338193	5338286	5338204	5338204	Nonsense_Mutation	C	A	p.E156*
BLCA	TCGA-ZF-AA56-01	JARID2	ENST00000341776.2,ENST00000397311.3	chr6	15374347:15374483:15410454:15410596:15452236:15452406,	15410455	15410596	15410497	15410497	Nonsense_Mutation	C	G	p.S75*
BLCA	TCGA-ZF-AA56-01	CCL2	ENST00000225831.4	chr17	32582303:32582444:32583240:32583358:32583740:32584222,	32583241	32583358	32583295	32583295	Nonsense_Mutation	C	G	p.S44*
BLCA	TCGA-ZF-AA58-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039230	49039230	Nonsense_Mutation	C	T	p.Q770*
BLCA	TCGA-ZF-AA58-01	CCDC36	ENST00000452691.2,ENST00000366429.2	chr3	49236942:49237006:49249198:49249269:49273980:49274007,	49249199	49249269	49249238	49249238	Nonsense_Mutation	A	T	p.K9*
BLCA	TCGA-ZF-AA58-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33179042	33179042	Nonsense_Mutation	C	G	p.S188*
BLCA	TCGA-ZF-AA58-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102943	61102943	Nonsense_Mutation	T	A	p.Y435*
BLCA	TCGA-ZF-AA5H-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BLCA	TCGA-ZF-AA5N-01	ACSM2B	ENST00000565232.1,ENST00000566384.1,ENST00000569344.1,ENST00000567001.1	chr16	20570629:20570769:20575990:20576175:20587528:20587599,20570629:20570769:20575990:20576175:20586743:20586778,	20575991	20576175	20576155	20576155	Nonsense_Mutation	G	A	p.R5*
BLCA	TCGA-BL-A3JM-01	DEPDC5	ENST00000266091.3,ENST00000535622.1,ENST00000382111.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32272142:32272251:32275510:32275738:32289567:32289737,	32275511	32275738	32275583	32275583	Nonsense_Mutation	G	A	p.W1262*
BLCA	TCGA-BT-A0YX-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000481180.1,ENST00000334652.5,ENST00000448243.1,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93648916:93649052:93649534:93649703:93651901:93651955,	93649535	93649703	93649605	93649605	Nonsense_Mutation	C	T	p.Q187*
BLCA	TCGA-BT-A20J-01	TRIM37	ENST00000376149.3,ENST00000577554.1	chr17	57078958:57079075:57089688:57089807:57092970:57092978,57076741:57076820:57089688:57089807:57092970:57092978,	57089689	57089807	57089713	57089713	Nonsense_Mutation	C	A	p.G891*
BLCA	TCGA-BT-A20J-01	FOXP2	ENST00000393489.3,ENST00000412402.1,ENST00000403559.4,ENST00000350908.4,ENST00000393491.3,ENST00000393494.2,ENST00000393498.2,ENST00000408937.3	chr7	114303504:114303574:114304327:114304491:114329836:114329981,	114304328	114304491	114304340	114304340	Nonsense_Mutation	G	T	p.E618*
BLCA	TCGA-BT-A20N-01	DUSP10	ENST00000477026.1,ENST00000323825.3	chr1	221875768:221876019:221879436:221879808:221912275:221913129,221875768:221876019:221879436:221879808:221915322:221915431,	221879437	221879808	221879668	221879668	Nonsense_Mutation	C	A	p.E318*
BLCA	TCGA-BT-A20P-01	PRDX6	ENST00000340385.5,ENST00000470017.1	chr1	173450464:173450621:173454499:173454646:173455393:173455540,	173454500	173454646	173454533	173454533	Nonsense_Mutation	G	T	p.E96*
BLCA	TCGA-BT-A20T-01	LRRC7	ENST00000035383.5,ENST00000310961.5	chr1	70486687:70486812:70488808:70489057:70493853:70494054,	70488809	70489057	70488897	70488897	Nonsense_Mutation	G	A	p.W507*
BLCA	TCGA-BT-A3PJ-01	WAC	ENST00000347934.4	chr10	28884855:28884970:28897114:28897360:28899627:28899639,28879650:28879761:28897114:28897360:28899627:28899639,	28897115	28897360	28897267	28897267	Nonsense_Mutation	C	T	p.Q358*
BLCA	TCGA-BT-A42B-01	YWHAE	ENST00000486241.1	chr17	1248621:1248793:1268152:1268352:1303340:1303429,1257504:1257641:1268152:1268352:1303340:1303429,1265223:1265302:1268152:1268352:1273002:1273035,1265223:1265302:1268152:1268352:1303340:1303429,	1268153	1268352	1268269	1268270	Nonsense_Mutation	TA	AT	p.49_50YK>**
BLCA	TCGA-BT-A42C-01	EDEM2	ENST00000542871.1	chr20	33714053:33714178:33719444:33719586:33721907:33721958,33714053:33714178:33719444:33719586:33722540:33722752,33714053:33714178:33719444:33719586:33730175:33730281,	33719445	33719586	33719493	33719493	Nonsense_Mutation	T	A	p.K266*
BLCA	TCGA-CF-A1HR-01	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25982350:25982514:25990451:25990595:25991610:25991737,	25990452	25990595	25990452	25990452	Nonsense_Mutation	T	A	p.R259*
BLCA	TCGA-CF-A1HS-01	INTS3	ENST00000476843.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000512605.1	chr1	153723610:153723715:153724754:153724884:153726176:153726294,153723610:153723715:153724754:153724884:153727117:153727215,	153724755	153724884	153724860	153724860	Nonsense_Mutation	C	T	p.Q279*
BLCA	TCGA-CF-A1HS-01	UBR1	ENST00000569971.1,ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43335541:43335593:43339358:43339487:43340589:43340689,	43339359	43339487	43339472	43339472	Nonsense_Mutation	G	A	p.R519*
BLCA	TCGA-CF-A3MG-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000592385.1,ENST00000336057.5,ENST00000225983.6	chr17	42164779:42165064:42165754:42165966:42168637:42168860,	42165755	42165966	42165952	42165952	Nonsense_Mutation	G	A	p.Q468*
BLCA	TCGA-CU-A3KJ-01	SRRT	ENST00000448764.1,ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100482915:100482991:100483321:100483383:100483483:100483562,	100483322	100483383	100483362	100483362	Nonsense_Mutation	C	G	p.S453*
BLCA	TCGA-CU-A3KJ-01	SRRT	ENST00000449389.1	chr7	100482915:100482991:100483321:100483395:100483483:100483562,	100483322	100483395	100483362	100483362	Nonsense_Mutation	C	G	p.S453*
BLCA	TCGA-DK-A1A3-01	CHFR	ENST00000544268.1,ENST00000266880.7	chr12	133425226:133425310:133428203:133428320:133430016:133430075,	133428204	133428320	133428210	133428210	Nonsense_Mutation	G	A	p.Q508*
BLCA	TCGA-DK-A1A3-01	CHFR	ENST00000432561.2,ENST00000541837.2,ENST00000315585.7,ENST00000537522.1,ENST00000450056.2,ENST00000443047.2	chr12	133425226:133425310:133428203:133428323:133430016:133430075,	133428204	133428323	133428210	133428210	Nonsense_Mutation	G	A	p.Q508*
BLCA	TCGA-DK-A1A6-01	TFAP2A	ENST00000478375.1,ENST00000482890.1,ENST00000466073.1,ENST00000379604.2,ENST00000379613.3	chr6	10407025:10407077:10410133:10410568:10415173:10415233,	10410134	10410568	10410427	10410427	Nonsense_Mutation	G	A	p.Q63*
BLCA	TCGA-DK-A1A6-01	FBXO25	ENST00000350302.3,ENST00000276326.5	chr8	381340:381444:385614:385707:399989:400083,382885:382935:385614:385707:399989:400083,	385615	385707	385664	385664	Nonsense_Mutation	C	G	p.S113*
BLCA	TCGA-DK-A1AC-01	LETMD1	ENST00000547256.1	chr12	51442860:51442968:51450132:51450285:51453143:51453195,	51450133	51450285	51450271	51450271	Nonsense_Mutation	C	T	p.Q301*
BLCA	TCGA-DK-A1AC-01	PHTF2	ENST00000454592.1,ENST00000307305.8,ENST00000415251.2,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2,ENST00000450574.1	chr7	77538109:77538275:77539561:77539726:77549595:77549782,	77539562	77539726	77539723	77539723	Nonsense_Mutation	C	G	p.S258*
BLCA	TCGA-DK-A2HX-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380875.3,ENST00000427623.1,ENST00000380894.1	chr9	14740146:14740232:14746350:14746466:14746920:14747049,	14746351	14746466	14746434	14746434	Nonsense_Mutation	C	T	p.W2057*
BLCA	TCGA-DK-A2I2-01	SYBU	ENST00000424158.2,ENST00000419099.1,ENST00000433638.1,ENST00000446070.2,ENST00000532779.1,ENST00000533171.1,ENST00000408908.2,ENST00000528647.1,ENST00000422135.1,ENST00000276646.9,ENST00000440310.1,ENST00000529690.1,ENST00000533895.1,ENST00000408889.3,ENST00000533394.1,ENST00000399066.3,ENST00000528331.1,ENST00000533065.1	chr8	110590124:110590246:110592027:110592231:110598288:110598391,	110592028	110592231	110592172	110592172	Nonsense_Mutation	G	T	p.S197*
BLCA	TCGA-DK-A2I4-01	MPZ	ENST00000491222.2,ENST00000336559.4,ENST00000533357.1,ENST00000360451.6,ENST00000463290.1	chr1	161276118:161276254:161276497:161276711:161277047:161277214,	161276498	161276711	161276525	161276525	Nonsense_Mutation	G	A	p.Q151*
BLCA	TCGA-DK-A2I4-01	KLHL5	ENST00000359687.2,ENST00000515612.1	chr4	39114639:39114852:39116778:39116950:39122629:39122825,39114639:39114852:39116778:39116950:39128313:39128415,	39116779	39116950	39116803	39116803	Nonsense_Mutation	G	A	p.W688*
BLCA	TCGA-DK-A2I4-01	KCNQ5	ENST00000403813.2	chr6	73830279:73830300:73843143:73843364:73879468:73879577,	73843144	73843364	73843259	73843259	Nonsense_Mutation	G	T	p.E455*
BLCA	TCGA-DK-A3IL-01	PLXNB3	ENST00000538282.1,ENST00000361971.5,ENST00000538776.1,ENST00000538966.1	chrX	153038684:153038861:153038972:153039168:153039313:153039553,	153038973	153039168	153038980	153038980	Nonsense_Mutation	C	T	p.R1031*
BLCA	TCGA-DK-A3IS-01	IFT46	ENST00000531201.1,ENST00000264021.3,ENST00000264020.2	chr11	118415615:118415726:118416123:118416209:118416507:118416568,	118416124	118416209	118416128	118416128	Nonsense_Mutation	G	C	p.S272*
BLCA	TCGA-DK-A3IT-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115261233:115261366:115262199:115262363:115263159:115263338,	115262200	115262363	115262243	115262243	Nonsense_Mutation	G	A	p.Q725*
BLCA	TCGA-DK-A3IU-01	DST	ENST00000370754.5,ENST00000446842.2,ENST00000421834.2,ENST00000370769.4	chr6	56330875:56330993:56334662:56334755:56334925:56335080,	56334663	56334755	56334713	56334713	Nonsense_Mutation	G	A	p.Q5388*
BLCA	TCGA-DK-A3IV-01	SYTL2	ENST00000533057.1	chr11	85418471:85418574:85420373:85420420:85425455:85425492,	85420374	85420420	85420380	85420380	Nonsense_Mutation	G	C	p.S665*
BLCA	TCGA-DK-A3IV-01	SYTL2	ENST00000524452.1,ENST00000527794.1,ENST00000389960.4,ENST00000530351.1,ENST00000533892.1	chr11	85418471:85418574:85420373:85420543:85425455:85425492,	85420374	85420543	85420380	85420380	Nonsense_Mutation	G	C	p.S665*
BLCA	TCGA-DK-A3WW-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000527688.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104714868:104715094:104719114:104719207:104720124:104720201,	104719115	104719207	104719163	104719163	Nonsense_Mutation	C	T	p.Q422*
BLCA	TCGA-DK-A3WW-01	TMEM71	ENST00000523829.1,ENST00000356838.3	chr8	133734285:133734361:133740043:133740232:133759187:133759303,	133740044	133740232	133740098	133740098	Nonsense_Mutation	G	A	p.Q207*
BLCA	TCGA-DK-A3X1-01	CFHR4	ENST00000367416.2,ENST00000367418.2,ENST00000251424.4	chr1	196881869:196882052:196883624:196883801:196884085:196884268,	196883625	196883801	196883726	196883726	Nonsense_Mutation	G	T	p.E181*
BLCA	TCGA-DK-A3X1-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132306	49132306	Nonsense_Mutation	C	A	p.S414*
BLCA	TCGA-E5-A2PC-01	CD84	ENST00000368054.3,ENST00000534968.1	chr1	160519706:160519769:160520727:160520825:160523167:160523287,	160520728	160520825	160520800	160520800	Nonsense_Mutation	G	T	p.Y279*
BLCA	TCGA-E5-A2PC-01	FGF12	ENST00000264730.3,ENST00000430714.1,ENST00000454309.2,ENST00000450716.1,ENST00000445105.2,ENST00000448795.1	chr3	191861848:191861916:191888246:191888445:192053149:192053253,	191888247	191888445	191888334	191888334	Nonsense_Mutation	C	A	p.G176*
BLCA	TCGA-E7-A3X6-01	WAC	ENST00000345541.6	chr10	28900702:28900851:28903495:28905291:28906585:28906713,	28903496	28905291	28903604	28903604	Nonsense_Mutation	C	T	p.Q516*
BLCA	TCGA-FD-A3B3-01	STK3	ENST00000518165.1	chr8	99719374:99719539:99761503:99761618:99779470:99779599,99608259:99608397:99761503:99761618:99779470:99779599,	99761504	99761618	99761532	99761532	Nonsense_Mutation	G	C	p.S108*
BLCA	TCGA-FD-A3N5-01	KDM2B	ENST00000377069.4,ENST00000538503.1,ENST00000377071.4,ENST00000538046.2,ENST00000543025.1,ENST00000536437.1	chr12	121932381:121932468:121947369:121947842:121951078:121951205,	121947370	121947842	121947735	121947735	Nonsense_Mutation	C	A	p.E428*
BLCA	TCGA-FD-A3N5-01	ATP8B3	ENST00000531925.1,ENST00000310127.6,ENST00000539485.1,ENST00000525591.1	chr19	1784817:1784945:1785157:1785296:1785467:1785707,	1785158	1785296	1785276	1785276	Nonsense_Mutation	G	C	p.Y1138*
BLCA	TCGA-FD-A3NA-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236198	33236198	Nonsense_Mutation	C	G	p.S414*
BLCA	TCGA-FD-A3SO-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616710	25616710	Nonsense_Mutation	G	C	p.S207*
BLCA	TCGA-FD-A3SP-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89133184:89133247:89133382:89133547:89135493:89135710,	89133383	89133547	89133385	89133385	Nonsense_Mutation	G	A	p.Q337*
BLCA	TCGA-FJ-A3Z7-01	CHEK2	ENST00000382580.2,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1	chr22	29091697:29091861:29092888:29092975:29095825:29095925,	29092889	29092975	29092917	29092917	Nonsense_Mutation	G	T	p.S356*
BLCA	TCGA-FJ-A3ZE-01	DOCK9	ENST00000442173.1,ENST00000448493.2,ENST00000339416.2,ENST00000376460.1	chr13	99520484:99520631:99532151:99532223:99532800:99532926,	99532152	99532223	99532221	99532221	Nonsense_Mutation	G	T	p.Y959*
BLCA	TCGA-FJ-A3ZF-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958034	76958034	Nonsense_Mutation	T	A	p.K869*
BLCA	TCGA-G2-A2EJ-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62394760:62394825:62396240:62396484:62396665:62396764,	62396241	62396484	62396347	62396347	Nonsense_Mutation	G	A	p.Q692*
BLCA	TCGA-G2-A2EO-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39701366:39701531:39703387:39703568:39705218:39705355,	39703388	39703568	39703448	39703448	Nonsense_Mutation	G	C	p.S1406*
BLCA	TCGA-G2-A3VY-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237530	33237530	Nonsense_Mutation	C	G	p.S858*
BLCA	TCGA-G2-A3VY-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000496323.1	chr2	54882206:54882345:54883050:54883135:54884986:54885183,	54883051	54883135	54883057	54883057	Nonsense_Mutation	G	T	p.E1990*
BLCA	TCGA-G2-A3VY-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677373	73677373	Nonsense_Mutation	C	G	p.S1241*
BLCA	TCGA-GC-A3I6-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144881429:144881622:144882445:144882881:144886096:144886329,	144882446	144882881	144882724	144882724	Nonsense_Mutation	G	A	p.Q1099*
BLCA	TCGA-GC-A3RC-01	SEC61A2	ENST00000475268.1,ENST00000379033.3,ENST00000379020.4,ENST00000419021.1,ENST00000304267.8,ENST00000495368.1,ENST00000298428.9	chr10	12191854:12191960:12197776:12197930:12198905:12199066,	12197777	12197930	12197894	12197894	Nonsense_Mutation	A	T	p.K194*
BLCA	TCGA-GC-A3YS-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799983	39799983	Nonsense_Mutation	C	T	p.Q1015*
BLCA	TCGA-GD-A2C5-01	CDCA7	ENST00000410019.3,ENST00000347703.3,ENST00000410101.3,ENST00000496441.1,ENST00000306721.3	chr2	174230179:174230320:174231010:174231160:174231877:174232014,	174231011	174231160	174231089	174231089	Nonsense_Mutation	C	T	p.R293*
BLCA	TCGA-GD-A3OP-01	DZIP1	ENST00000347108.3,ENST00000361396.2,ENST00000376829.2,ENST00000466569.1,ENST00000361156.3	chr13	96272138:96272201:96274596:96274734:96277021:96277183,	96274597	96274734	96274734	96274734	Nonsense_Mutation	G	A	p.Q325*
BLCA	TCGA-GD-A3OP-01	MTDH	ENST00000519934.1	chr8	98711981:98712080:98718853:98718978:98725889:98725997,98703358:98703416:98718853:98718978:98725889:98725997,	98718854	98718978	98718973	98718973	Nonsense_Mutation	C	T	p.Q423*
BLCA	TCGA-GD-A3OS-01	EXT2	ENST00000358681.4,ENST00000343631.3,ENST00000533608.1,ENST00000395673.3	chr11	44135734:44135851:44146338:44146534:44148365:44148505,	44146339	44146534	44146519	44146519	Nonsense_Mutation	C	G	p.Y308*
BLCA	TCGA-GV-A3JW-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48232051:48232186:48234186:48234390:48237138:48237211,	48234187	48234390	48234386	48234387	Nonsense_Mutation	CC	TA	p.G628*
BLCA	TCGA-GV-A3JX-01	NSUN6	ENST00000377304.4	chr10	18837040:18837166:18840751:18840900:18874877:18875022,	18840752	18840900	18840786	18840786	Nonsense_Mutation	G	T	p.S346*
BLCA	TCGA-GV-A3JZ-01	WAC	ENST00000347934.4	chr10	28884855:28884970:28897114:28897360:28899627:28899639,28879650:28879761:28897114:28897360:28899627:28899639,	28897115	28897360	28897142	28897142	Nonsense_Mutation	C	G	p.S316*
BLCA	TCGA-GV-A3JZ-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4876469:4876548:4876879:4877064:4877679:4877795,	4876880	4877064	4876991	4876991	Nonsense_Mutation	C	T	p.W697*
BLCA	TCGA-GV-A3QF-01	RASGRP2	ENST00000377497.3,ENST00000421556.1,ENST00000354024.3,ENST00000394432.3	chr11	64494382:64494603:64494767:64494832:64496334:64496514,	64494768	64494832	64494818	64494818	Nonsense_Mutation	C	A	p.E596*
BLCA	TCGA-GV-A3QF-01	RASGRP2	ENST00000464324.1,ENST00000377494.1	chr11	64494382:64494603:64494767:64494835:64496334:64496514,	64494768	64494835	64494818	64494818	Nonsense_Mutation	C	A	p.E596*
BLCA	TCGA-GV-A3QH-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268537	1268537	Nonsense_Mutation	C	A	p.S4004*
BLCA	TCGA-GV-A3QI-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800781	39800781	Nonsense_Mutation	G	T	p.E1281*
BLCA	TCGA-GV-A3QI-01	CD200	ENST00000473539.1	chr3	112052024:112052071:112059748:112059830:112063808:112063922,112054789:112054864:112059748:112059830:112063808:112063922,	112059749	112059830	112059796	112059796	Nonsense_Mutation	G	A	p.W45*
BLCA	TCGA-GV-A3QI-01	RRAGB	ENST00000414239.1,ENST00000262850.7,ENST00000374941.4	chrX	55757833:55758019:55777533:55777629:55779824:55779908,	55777534	55777629	55777615	55777615	Nonsense_Mutation	G	T	p.E228*
BLCA	TCGA-GV-A40G-01	SERINC3	ENST00000342374.4,ENST00000541235.1,ENST00000255175.1	chr20	43135467:43135637:43138531:43138669:43139929:43140009,	43138532	43138669	43138622	43138622	Nonsense_Mutation	G	A	p.Q175*
BLCA	TCGA-H4-A2HQ-01	MPZ	ENST00000491222.2,ENST00000336559.4,ENST00000533357.1,ENST00000360451.6,ENST00000463290.1	chr1	161276118:161276254:161276497:161276711:161277047:161277214,	161276498	161276711	161276626	161276626	Nonsense_Mutation	C	T	p.W117*
BLCA	TCGA-H4-A2HQ-01	UBTF	ENST00000527034.1,ENST00000533177.1,ENST00000526094.1,ENST00000393606.3,ENST00000343638.5	chr17	42289240:42289374:42290186:42290307:42290585:42290650,	42290187	42290307	42290269	42290269	Nonsense_Mutation	G	T	p.S193*
BLCA	TCGA-H4-A2HQ-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47884595:47884745:47887189:47887342:47887654:47887894,	47887190	47887342	47887268	47887268	Nonsense_Mutation	G	T	p.E340*
BLCA	TCGA-K4-A3WS-01	TP53BP2	ENST00000496282.1,ENST00000343537.7,ENST00000494100.1,ENST00000391878.2	chr1	223991936:223992050:223994547:223994649:223998132:223998215,	223994548	223994649	223994610	223994610	Nonsense_Mutation	G	A	p.Q138*
BRCA	TCGA-BH-A1FN-01	A2M	ENST00000318602.7	chr12	9253739:9253803:9254042:9254270:9256834:9256996,	9254043	9254270	9254262	9254262	Nonsense_Mutation	G	T	p.Y425*
BRCA	TCGA-E2-A1LB-01	A2ML1	ENST00000299698.7,ENST00000541459.1	chr12	8995831:8995957:8998037:8998098:8998672:8998720,	8998038	8998098	8998092	8998092	Nonsense_Mutation	A	T	p.K511*
BRCA	TCGA-A2-A25E-01	ABCA10	ENST00000269081.4,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67189633:67189753:67189954:67190130:67190525:67190636,	67189955	67190130	67190107	67190107	Nonsense_Mutation	G	A	p.Q457*
BRCA	TCGA-D8-A1J9-01	ABCB6	ENST00000265316.3,ENST00000439002.2,ENST00000295750.4,ENST00000452545.1	chr2	220079682:220079804:220080718:220080902:220081085:220081187,	220080719	220080902	220080803	220080803	Nonsense_Mutation	G	C	p.S357*
BRCA	TCGA-AN-A0XN-01	ACSM2B	ENST00000565232.1,ENST00000566384.1,ENST00000569344.1,ENST00000567001.1	chr16	20570629:20570769:20575990:20576175:20587528:20587599,20570629:20570769:20575990:20576175:20586743:20586778,	20575991	20576175	20576155	20576155	Nonsense_Mutation	G	A	p.R5*
BRCA	TCGA-A2-A0EY-01	ACTR6	ENST00000553038.1,ENST00000552064.1	chr12	100603943:100603986:100604072:100604129:100606033:100606132,100601440:100601564:100604072:100604129:100606033:100606132,	100604073	100604129	100604127	100604127	Nonsense_Mutation	C	G	p.Y190*
BRCA	TCGA-E9-A22G-01	ACVR1B	ENST00000257963.4,ENST00000415850.2,ENST00000542485.1,ENST00000426655.2	chr12	52370110:52370359:52374752:52374983:52377782:52377950,	52374753	52374983	52374849	52374849	Nonsense_Mutation	G	A	p.W226*
BRCA	TCGA-AN-A0G0-01	ACVR1B	ENST00000563121.1	chr12	52377818:52377950:52378975:52379132:52385646:52385776,	52378976	52379132	52379131	52379131	Nonsense_Mutation	C	T	p.R379*
BRCA	TCGA-E2-A10C-01	ADAM33	ENST00000350009.2,ENST00000356518.2,ENST00000379861.4	chr20	3654865:3654931:3655150:3655340:3655419:3655496,	3655151	3655340	3655266	3655266	Nonsense_Mutation	G	C	p.S162*
BRCA	TCGA-A8-A08L-01	ADAMTS9	ENST00000459780.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64644177:64644467:64666876:64667039:64672243:64672286,	64666877	64667039	64666906	64666906	Nonsense_Mutation	G	C	p.S217*
BRCA	TCGA-E2-A1LG-01	ADAMTSL1	ENST00000380566.4,ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18635940:18636015:18639251:18639409:18657636:18657748,	18639252	18639409	18639298	18639298	Nonsense_Mutation	C	G	p.S29*
BRCA	TCGA-AO-A124-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84611654:84611834:84639235:84639389:84651024:84651057,	84639236	84639389	84639385	84639385	Nonsense_Mutation	C	A	p.C880*
BRCA	TCGA-B6-A0I2-01	ADCK1	ENST00000393639.4	chr14	78288777:78288861:78325418:78325622:78353433:78353553,78288777:78288861:78325418:78325622:78365442:78365601,	78325419	78325622	78325602	78325602	Nonsense_Mutation	C	T	p.R135*
BRCA	TCGA-AN-A0AR-01	ADK	ENST00000541550.1	chr10	75910992:75911101:75960521:75960596:75984295:75984349,75936520:75936644:75960521:75960596:75984295:75984349,75936520:75936644:75960521:75960596:76074424:76074503,	75960522	75960596	75960544	75960544	Nonsense_Mutation	G	T	p.G30*
BRCA	TCGA-BH-A0BC-01	AHCTF1	ENST00000366508.1,ENST00000326225.3,ENST00000391829.2	chr1	247076533:247076714:247079443:247079697:247081551:247081679,	247079444	247079697	247079596	247079596	Nonsense_Mutation	C	A	p.E75*
BRCA	TCGA-C8-A134-01	AIG1	ENST00000275235.4,ENST00000458219.1,ENST00000357847.4,ENST00000367601.4	chr6	143382083:143382203:143486218:143486320:143605246:143605362,143457971:143458127:143486218:143486320:143605246:143605362,	143486219	143486320	143486276	143486276	Nonsense_Mutation	A	T	p.K119*
BRCA	TCGA-C8-A135-01	AKR1C2	ENST00000604184.1,ENST00000604507.1,ENST00000460124.1,ENST00000407674.1,ENST00000421196.3,ENST00000455190.1	chr10	5042741:5042858:5043705:5043873:5045943:5046052,	5043706	5043873	5043762	5043762	Nonsense_Mutation	G	A	p.R66*
BRCA	TCGA-E9-A1R2-01	AKT2	ENST00000311278.6	chr19	40741169:40741257:40741796:40742011:40742163:40742292,40741169:40741257:40741796:40742011:40743875:40743973,	40741797	40742011	40741973	40741973	Nonsense_Mutation	C	T	p.W333*
BRCA	TCGA-E9-A1R2-01	AKT2	ENST00000496089.2	chr19	40741169:40741257:40741796:40742292:40743875:40743973,	40741797	40742292	40741973	40741973	Nonsense_Mutation	C	T	p.W333*
BRCA	TCGA-B6-A0RL-01	AKT3	ENST00000336199.5,ENST00000263826.5,ENST00000366539.1,ENST00000366540.1	chr1	243708811:243708899:243716030:243716245:243727021:243727150,	243716031	243716245	243716070	243716070	Nonsense_Mutation	G	T	p.S375*
BRCA	TCGA-BH-A1EO-01	AKT3	ENST00000336199.5,ENST00000263826.5,ENST00000552631.1,ENST00000366539.1,ENST00000366540.1	chr1	243809206:243809339:243828073:243828185:243858892:243859018,	243828074	243828185	243828162	243828162	Nonsense_Mutation	G	A	p.R66*
BRCA	TCGA-BH-A208-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73718057	73718057	Nonsense_Mutation	C	T	p.Q2990*
BRCA	TCGA-A7-A26H-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73786098:73786269:73799388:73800551:73826527:73826648,	73799389	73800551	73799946	73799946	Nonsense_Mutation	G	T	p.E3647*
BRCA	TCGA-AO-A0J7-01	ALOX5	ENST00000374391.2	chr10	45869674:45869877:45877930:45878129:45891302:45891384,	45877931	45878129	45878089	45878089	Nonsense_Mutation	G	A	p.W103*
BRCA	TCGA-BH-A0AW-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2,ENST00000433782.2	chr2	190561026:190561095:190569748:190569950:190571663:190571868,	190569749	190569950	190569785	190569785	Nonsense_Mutation	C	G	p.S511*
BRCA	TCGA-B6-A0IB-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347633	89347633	Nonsense_Mutation	C	A	p.E1773*
BRCA	TCGA-EW-A1PB-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257247	9257247	Nonsense_Mutation	G	T	p.E1328*
BRCA	TCGA-A8-A08R-01	ANKRD13C	ENST00000498735.1	chr1	70771906:70771973:70781163:70781249:70790535:70790640,	70781164	70781249	70781223	70781223	Nonsense_Mutation	G	A	p.Q202*
BRCA	TCGA-C8-A12T-01	AP4E1	ENST00000561393.1,ENST00000558439.1,ENST00000261842.5,ENST00000560508.1	chr15	51289945:51290080:51291268:51291459:51293222:51293380,	51291269	51291459	51291329	51291329	Nonsense_Mutation	C	T	p.Q989*
BRCA	TCGA-BH-A0HA-01	AP4M1	ENST00000421755.1	chr7	99704035:99704137:99704280:99704535:99707813:99707942,	99704281	99704535	99704464	99704464	Nonsense_Mutation	C	T	p.R441*
BRCA	TCGA-A8-A075-01	ARHGEF12	ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120350668:120351139:120351968:120352285:120355146:120355216,	120351969	120352285	120352172	120352172	Nonsense_Mutation	G	T	p.G1481*
BRCA	TCGA-BH-A0B1-01	ARHGEF17	ENST00000263674.3	chr11	73057927:73058005:73063874:73064057:73066577:73066694,	73063875	73064057	73064010	73064010	Nonsense_Mutation	C	T	p.Q1136*
BRCA	TCGA-A2-A0YK-01	ARHGEF7	ENST00000469877.1,ENST00000544132.1	chr13	111927878:111928025:111929933:111930020:111932884:111933024,	111929934	111930020	111930018	111930018	Nonsense_Mutation	C	T	p.Q523*
BRCA	TCGA-BH-A0AU-01	ARNT	ENST00000515192.1,ENST00000471844.2,ENST00000354396.2,ENST00000468970.1,ENST00000505755.1,ENST00000358595.5	chr1	150804809:150804875:150807013:150807116:150808755:150808969,	150807014	150807116	150807078	150807078	Nonsense_Mutation	C	A	p.E247*
BRCA	TCGA-A8-A094-01	ATF6	ENST00000367942.3	chr1	161761913:161762117:161771841:161772062:161789422:161789608,	161771842	161772062	161771862	161771862	Nonsense_Mutation	C	T	p.Q237*
BRCA	TCGA-E2-A14W-01	ATP13A2	ENST00000466561.1,ENST00000326735.8,ENST00000452699.1	chr1	17316185:17316265:17316381:17316498:17316621:17316782,	17316382	17316498	17316489	17316489	Nonsense_Mutation	G	A	p.Q808*
BRCA	TCGA-A2-A0CM-01	ATP1B3	ENST00000462082.1	chr3	141595696:141595752:141622461:141622590:141626008:141626116,141595696:141595752:141622461:141622590:141644372:141644485,	141622462	141622590	141622516	141622516	Nonsense_Mutation	C	G	p.S55*
BRCA	TCGA-BH-A0HO-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699316	30699316	Nonsense_Mutation	C	T	p.R391*
BRCA	TCGA-A2-A0YG-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892482	72892482	Nonsense_Mutation	G	A	p.Q437*
BRCA	TCGA-AR-A1AR-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160175489:160176929:160181321:160181465:160182163:160182429,	160181322	160181465	160181323	160181323	Nonsense_Mutation	G	A	p.Q2118*
BRCA	TCGA-D8-A1JD-01	BCAR1	ENST00000542031.2,ENST00000563038.1,ENST00000562556.1,ENST00000566982.1,ENST00000546196.1,ENST00000393422.2,ENST00000538440.2,ENST00000393420.6,ENST00000162330.5,ENST00000418647.3,ENST00000535626.2,ENST00000420641.3	chr16	75263408:75263921:75267743:75267833:75268786:75269884,	75267744	75267833	75267803	75267803	Nonsense_Mutation	C	A	p.E681*
BRCA	TCGA-E2-A150-01	BCAS1	ENST00000434986.2	chr20	52561464:52561535:52569970:52570234:52591927:52591969,52561464:52561535:52569970:52570234:52583444:52583612,52561464:52561535:52569970:52570234:52601825:52601972,	52569971	52570234	52570137	52570137	Nonsense_Mutation	G	T	p.S505*
BRCA	TCGA-D8-A1JJ-01	BCAT2	ENST00000545387.2,ENST00000316273.6,ENST00000402551.1,ENST00000597011.1	chr19	49298366:49298721:49299684:49299759:49299834:49299975,	49299685	49299759	49299687	49299687	Nonsense_Mutation	G	A	p.Q380*
BRCA	TCGA-BH-A18I-01	BCHE	ENST00000264381.3	chr3	165490871:165491294:165503932:165504099:165547304:165548829,	165503933	165504099	165504044	165504044	Nonsense_Mutation	C	A	p.E525*
BRCA	TCGA-D8-A1Y1-01	BDP1	ENST00000358731.4,ENST00000380675.2	chr5	70855808:70856064:70858100:70858347:70860580:70863647,	70858101	70858347	70858270	70858270	Nonsense_Mutation	C	T	p.R2556*
BRCA	TCGA-E2-A15J-01	BET1L	ENST00000382762.3,ENST00000332865.6,ENST00000325147.9	chr11	205610:205667:205951:206043:207302:207356,	205952	206043	205996	205996	Nonsense_Mutation	G	A	p.R23*
BRCA	TCGA-EW-A1PB-01	BMP1	ENST00000354870.5,ENST00000483364.1,ENST00000306385.5,ENST00000397816.3,ENST00000521385.1,ENST00000518913.1,ENST00000520982.1,ENST00000517324.1,ENST00000306349.8,ENST00000520970.1,ENST00000397814.3,ENST00000520626.1,ENST00000471755.1	chr8	22051957:22052103:22052236:22052432:22052974:22053100,	22052237	22052432	22052371	22052371	Nonsense_Mutation	G	A	p.W526*
BRCA	TCGA-A8-A07C-01	BNC2	ENST00000380667.2	chr9	16727794:16727995:16738357:16738483:16870643:16870704,16582980:16583083:16738357:16738483:16870643:16870704,	16738358	16738483	16738360	16738360	Nonsense_Mutation	C	A	p.E43*
BRCA	TCGA-A1-A0SH-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244748	41244748	Nonsense_Mutation	G	A	p.Q934*
BRCA	TCGA-B6-A0IK-01	BTN2A2	ENST00000483410.1,ENST00000352867.2,ENST00000467485.1	chr6	26383370:26383409:26388240:26388522:26390232:26390365,26385370:26385590:26388240:26388522:26390232:26390365,26384019:26384143:26388240:26388522:26390232:26390365,	26388241	26388522	26388276	26388276	Nonsense_Mutation	C	T	p.Q160*
BRCA	TCGA-A8-A09A-01	BTRC	ENST00000370183.2	chr10	103113938:103113985:103190101:103190209:103239124:103239214,103114290:103114366:103190101:103190209:103221737:103221815,	103190102	103190209	103190165	103190165	Nonsense_Mutation	C	T	p.R38*
BRCA	TCGA-D8-A1JG-01	C1orf141	ENST00000371007.2,ENST00000544837.1,ENST00000371006.1	chr1	67561978:67562004:67581034:67581147:67591434:67591592,	67581035	67581147	67581050	67581050	Nonsense_Mutation	C	A	p.E111*
BRCA	TCGA-A8-A094-01	C2orf68	ENST00000420686.1,ENST00000306336.5	chr2	85835689:85836190:85836557:85836709:85838790:85838864,	85836558	85836709	85836560	85836560	Nonsense_Mutation	G	A	p.Q126*
BRCA	TCGA-AO-A0J3-01	C6orf118	ENST00000230301.8	chr6	165713852:165713975:165715057:165715785:165723050:165723096,	165715058	165715785	165715773	165715773	Nonsense_Mutation	C	T	p.W13*
BRCA	TCGA-BH-A0DK-01	C6orf136	ENST00000488383.1,ENST00000376473.5	chr6	30615382:30615623:30617334:30617736:30618770:30618859,30614962:30615080:30617334:30617736:30618770:30618859,	30617335	30617736	30617375	30617375	Nonsense_Mutation	G	A	p.W38*
BRCA	TCGA-E9-A1RG-01	C7orf26	ENST00000472693.1	chr7	6631387:6631498:6634042:6634231:6639459:6639523,	6634043	6634231	6634119	6634119	Nonsense_Mutation	C	A	p.Y156*
BRCA	TCGA-E9-A1RG-01	C7orf26	ENST00000359073.5,ENST00000344417.5	chr7	6631387:6631498:6634065:6634231:6639459:6639523,	6634066	6634231	6634119	6634119	Nonsense_Mutation	C	A	p.Y156*
BRCA	TCGA-AN-A0FL-01	C8orf31	ENST00000395172.1	chr8	144124624:144124679:144126065:144126234:144129095:144129231,144124624:144124679:144126065:144126234:144130625:144130715,	144126066	144126234	144126093	144126093	Nonsense_Mutation	G	T	p.G72*
BRCA	TCGA-AN-A0XW-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24509532:24509715:24515333:24515665:24530268:24530382,	24515334	24515665	24515498	24515498	Nonsense_Mutation	G	T	p.E1489*
BRCA	TCGA-A2-A0CX-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21736510	21736510	Nonsense_Mutation	G	T	p.E349*
BRCA	TCGA-BH-A18P-01	CAD	ENST00000264705.4	chr2	27448572:27448794:27448998:27449187:27449392:27449517,	27448999	27449187	27449092	27449092	Nonsense_Mutation	C	T	p.Q646*
BRCA	TCGA-A2-A0CX-01	CALCOCO1	ENST00000549613.1,ENST00000262059.4,ENST00000550804.1,ENST00000430117.2,ENST00000548263.1,ENST00000549935.2	chr12	54108381:54108477:54108983:54109109:54109576:54109831,	54108984	54109109	54109013	54109013	Nonsense_Mutation	C	A	p.E453*
BRCA	TCGA-A8-A07G-01	CAPSL	ENST00000514524.1,ENST00000397366.1,ENST00000513623.1	chr5	35910467:35910645:35921085:35921222:35938642:35938737,	35921086	35921222	35921198	35921198	Nonsense_Mutation	G	A	p.R9*
BRCA	TCGA-C8-A12T-01	CASK	ENST00000378166.4,ENST00000378154.1,ENST00000378163.1,ENST00000378158.1,ENST00000361962.4,ENST00000468986.2,ENST00000421587.2,ENST00000318588.9,ENST00000442742.2	chrX	41604776:41604854:41646430:41646536:41712367:41712480,	41646431	41646536	41646461	41646461	Nonsense_Mutation	G	C	p.S83*
BRCA	TCGA-EW-A1P3-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131411	202131411	Nonsense_Mutation	C	T	p.R127*
BRCA	TCGA-EW-A1P3-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131411	202131411	Nonsense_Mutation	C	T	p.R127*
BRCA	TCGA-B6-A0RP-01	CASP8	ENST00000339403.6	chr2	202139611:202139676:202141549:202141827:202149538:202150040,	202141550	202141827	202141634	202141634	Nonsense_Mutation	G	T	p.E308*
BRCA	TCGA-B6-A0RP-01	CASP8	ENST00000432109.2,ENST00000323492.7,ENST00000358485.4,ENST00000264275.5,ENST00000392263.2	chr2	202137620:202137665:202141549:202141691:202149538:202150040,202137360:202137499:202141549:202141691:202149538:202149673,202139611:202139676:202141549:202141691:202149538:202150040,	202141550	202141691	202141634	202141634	Nonsense_Mutation	G	T	p.E308*
BRCA	TCGA-AR-A0U4-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000338252.3,ENST00000325674.7,ENST00000508608.1,ENST00000348386.3,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000510098.1,ENST00000508579.1,ENST00000395813.1,ENST00000437034.2,ENST00000510500.1,ENST00000395812.2,ENST00000484552.1,ENST00000511049.1,ENST00000515663.1,ENST00000510756.1,ENST00000509903.1	chr5	96101756:96101849:96103141:96103186:96103610:96103703,	96103142	96103186	96103182	96103182	Nonsense_Mutation	C	G	p.S724*
BRCA	TCGA-A8-A09W-01	CBFB	ENST00000290858.6,ENST00000412916.2,ENST00000561924.2	chr16	67063854:67064080:67070541:67070658:67100584:67100699,67063629:67063716:67070541:67070658:67100584:67100663,	67070542	67070658	67070595	67070595	Nonsense_Mutation	G	A	p.W73*
BRCA	TCGA-BH-A1F8-01	CCAR1	ENST00000535016.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543225.1	chr10	70481011:70481045:70482211:70482334:70496632:70496667,70480998:70481039:70482211:70482334:70496632:70496667,	70482212	70482334	70482304	70482304	Nonsense_Mutation	C	T	p.Q15*
BRCA	TCGA-BH-A0BP-01	CCDC113	ENST00000219299.4	chr16	58286630:58286757:58287901:58288063:58292271:58292427,	58287902	58288063	58287992	58287992	Nonsense_Mutation	G	T	p.E107*
BRCA	TCGA-A2-A0YK-01	CCDC125	ENST00000511257.1,ENST00000396499.1,ENST00000396496.2	chr5	68578716:68578861:68581163:68581294:68588014:68588174,	68581164	68581294	68581193	68581193	Nonsense_Mutation	G	A	p.Q401*
BRCA	TCGA-E2-A108-01	CCDC34	ENST00000328697.6,ENST00000317945.6	chr11	27371878:27371986:27378949:27379088:27384382:27384781,	27378950	27379088	27379074	27379074	Nonsense_Mutation	G	C	p.S125*
BRCA	TCGA-BH-A1F8-01	CCDC42	ENST00000293845.3	chr17	8638413:8638572:8638707:8638929:8644791:8644989,	8638708	8638929	8638833	8638833	Nonsense_Mutation	C	A	p.E197*
BRCA	TCGA-EW-A1J5-01	CCT3	ENST00000446905.1,ENST00000368259.2	chr1	156294770:156294880:156303337:156303434:156305617:156305679,	156303338	156303434	156303431	156303431	Nonsense_Mutation	G	A	p.Q71*
BRCA	TCGA-BH-A1EO-01	CD1D	ENST00000368171.3	chr1	158151821:158152100:158152667:158152946:158153725:158153825,	158152668	158152946	158152850	158152850	Nonsense_Mutation	C	T	p.R264*
BRCA	TCGA-AR-A24Q-01	CD226	ENST00000579496.1,ENST00000582621.1,ENST00000280200.4,ENST00000583955.1	chr18	67563267:67563281:67613969:67614305:67614596:67614655,	67613970	67614305	67613972	67613972	Nonsense_Mutation	G	C	p.S127*
BRCA	TCGA-E2-A108-01	CD40	ENST00000477696.1	chr20	44747011:44747033:44750362:44750537:44750871:44750882,	44750363	44750537	44750513	44750513	Nonsense_Mutation	C	T	p.Q36*
BRCA	TCGA-E2-A108-01	CD40	ENST00000372276.3,ENST00000489304.1,ENST00000466205.1	chr20	44747011:44747033:44750458:44750537:44750871:44750882,	44750459	44750537	44750513	44750513	Nonsense_Mutation	C	T	p.Q36*
BRCA	TCGA-D8-A1Y0-01	CDAN1	ENST00000356231.3	chr15	43024530:43024606:43025294:43025384:43026135:43026245,	43025295	43025384	43025328	43025328	Nonsense_Mutation	C	T	p.W475*
BRCA	TCGA-AR-A0TW-01	CDC42BPA	ENST00000366769.3,ENST00000334218.5,ENST00000366767.3,ENST00000448940.1	chr1	227227831:227227937:227235627:227235711:227257477:227257554,	227235628	227235711	227235647	227235647	Nonsense_Mutation	G	C	p.S990*
BRCA	TCGA-A2-A0EY-01	CDC42BPB	ENST00000361246.2,ENST00000558321.1,ENST00000561271.1	chr14	103452846:103452917:103465901:103466050:103470264:103470360,	103465902	103466050	103465921	103465921	Nonsense_Mutation	G	A	p.Q193*
BRCA	TCGA-AR-A256-01	CDC42BPG	ENST00000342711.5	chr11	64606125:64606374:64606504:64606705:64606949:64607043,	64606505	64606705	64606639	64606639	Nonsense_Mutation	C	A	p.E248*
BRCA	TCGA-D8-A1XO-01	CDH1	ENST00000566510.1,ENST00000566612.1,ENST00000422392.2	chr16	68771254:68771366:68772199:68772314:68835572:68835796,	68772200	68772314	68772218	68772218	Nonsense_Mutation	C	T	p.Q23*
BRCA	TCGA-EW-A1J3-01	CDH1	ENST00000566510.1,ENST00000566612.1,ENST00000422392.2	chr16	68771254:68771366:68772199:68772314:68835572:68835796,	68772200	68772314	68772218	68772218	Nonsense_Mutation	C	T	p.Q23*
BRCA	TCGA-AO-A1KS-01	CDH1	ENST00000566510.1,ENST00000566612.1,ENST00000422392.2	chr16	68771254:68771366:68772199:68772314:68835572:68835796,	68772200	68772314	68772254	68772254	Nonsense_Mutation	G	T	p.E35*
BRCA	TCGA-EW-A1J2-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68855903:68856128:68857301:68857529:68862076:68862207,	68857302	68857529	68857367	68857367	Nonsense_Mutation	A	T	p.K668*
BRCA	TCGA-B6-A0RQ-01	CDH1	ENST00000566510.1,ENST00000566612.1,ENST00000422392.2	chr16	68771254:68771366:68772199:68772314:68835572:68835796,	68772200	68772314	68772218	68772218	Nonsense_Mutation	C	T	p.Q23*
BRCA	TCGA-A8-A08L-01	CEACAM21	ENST00000482870.2,ENST00000187608.9	chr19	42083551:42083911:42085705:42085981:42090702:42090796,	42085706	42085981	42085717	42085717	Nonsense_Mutation	C	T	p.Q146*
BRCA	TCGA-A8-A08L-01	CEACAM21	ENST00000457737.1	chr19	42083551:42083911:42085622:42085981:42090702:42090796,	42085623	42085981	42085717	42085717	Nonsense_Mutation	C	T	p.Q146*
BRCA	TCGA-EW-A1J5-01	CELSR2	ENST00000271332.3	chr1	109812554:109812755:109813047:109813222:109813548:109813661,	109813048	109813222	109813147	109813147	Nonsense_Mutation	G	T	p.E2470*
BRCA	TCGA-A8-A06Q-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104062906:104063065:104064404:104064563:104065487:104065775,	104064405	104064563	104064461	104064461	Nonsense_Mutation	C	A	p.E1750*
BRCA	TCGA-E9-A1NG-01	CEP250	ENST00000461386.1,ENST00000342580.4,ENST00000397527.1	chr20	34055128:34055380:34057714:34057811:34059874:34059955,	34057715	34057811	34057761	34057761	Nonsense_Mutation	G	T	p.E300*
BRCA	TCGA-EW-A1J5-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117250572:117250723:117251634:117251862:117254666:117254767,	117251635	117251862	117251828	117251828	Nonsense_Mutation	C	G	p.S53*
BRCA	TCGA-B6-A0RG-01	CFTR	ENST00000426809.1,ENST00000003084.6	chr7	117182069:117182162:117188694:117188877:117199517:117199709,	117188695	117188877	117188875	117188875	Nonsense_Mutation	A	T	p.K464*
BRCA	TCGA-A8-A06Q-01	CHD2	ENST00000557381.1,ENST00000555582.2,ENST00000394196.4	chr15	93498652:93498742:93499688:93499879:93510554:93510571,	93499689	93499879	93499827	93499827	Nonsense_Mutation	C	T	p.Q650*
BRCA	TCGA-BH-A0BP-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798780	7798780	Nonsense_Mutation	C	T	p.Q602*
BRCA	TCGA-A2-A04W-01	CHD4	ENST00000309577.6,ENST00000544484.1,ENST00000357008.2,ENST00000544040.1	chr12	6687574:6687712:6688011:6688083:6690209:6690339,	6688012	6688083	6688060	6688060	Nonsense_Mutation	C	A	p.E1645*
BRCA	TCGA-BH-A0H6-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903619	5903619	Nonsense_Mutation	C	T	p.R277*
BRCA	TCGA-AN-A0XL-01	CHL1	ENST00000445697.1	chr3	433357:433480:436375:436555:440699:440831,	436376	436555	436516	436516	Nonsense_Mutation	A	T	p.K1019*
BRCA	TCGA-A8-A07Z-01	CIZ1	ENST00000357558.5,ENST00000393608.1,ENST00000372938.5,ENST00000415526.1,ENST00000541172.1,ENST00000277465.4,ENST00000372948.3,ENST00000325721.8,ENST00000372954.1,ENST00000476727.2	chr9	130931354:130931480:130931684:130931798:130932298:130932314,	130931685	130931798	130931780	130931780	Nonsense_Mutation	G	A	p.R684*
BRCA	TCGA-A8-A06Q-01	CLEC4M	ENST00000394122.2,ENST00000248228.4,ENST00000334806.5,ENST00000327325.5,ENST00000595496.1,ENST00000359059.5,ENST00000602143.1,ENST00000596707.1	chr19	7831541:7831693:7832401:7832514:7833723:7833874,	7832402	7832514	7832457	7832457	Nonsense_Mutation	C	G	p.S331*
BRCA	TCGA-C8-A12X-01	CLIP4	ENST00000404424.1,ENST00000493551.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29383231:29383333:29386696:29386820:29390341:29390406,	29386697	29386820	29386783	29386783	Nonsense_Mutation	A	T	p.R541*
BRCA	TCGA-BH-A18V-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669354	95669354	Nonsense_Mutation	G	A	p.Q778*
BRCA	TCGA-EW-A1J5-01	CLU	ENST00000405140.3,ENST00000316403.10,ENST00000523500.1,ENST00000560366.1,ENST00000522098.1,ENST00000546343.1	chr8	27456053:27456152:27457296:27457526:27461807:27461912,	27457297	27457526	27457503	27457503	Nonsense_Mutation	G	A	p.Q372*
BRCA	TCGA-AR-A256-01	CMAS	ENST00000229329.2,ENST00000535610.1,ENST00000537658.1	chr12	22213765:22213860:22214214:22214386:22215214:22215347,	22214215	22214386	22214246	22214246	Nonsense_Mutation	G	T	p.E274*
BRCA	TCGA-D8-A1XY-01	CNTROB	ENST00000576723.1,ENST00000565740.1,ENST00000563694.1,ENST00000380262.3	chr17	7846708:7846842:7847440:7847566:7847793:7847956,	7847441	7847566	7847523	7847523	Nonsense_Mutation	C	T	p.R510*
BRCA	TCGA-A8-A07C-01	COL18A1	ENST00000400337.2	chr21	46825293:46825388:46888155:46888700:46893808:46893895,	46888156	46888700	46888327	46888327	Nonsense_Mutation	C	A	p.S508*
BRCA	TCGA-AQ-A04H-01	COL19A1	ENST00000393344.1,ENST00000322773.4	chr6	70831771:70831834:70840073:70840115:70847576:70847639,	70840074	70840115	70840095	70840095	Nonsense_Mutation	G	T	p.G455*
BRCA	TCGA-BH-A0HK-01	COL3A1	ENST00000304636.3	chr2	189872225:189872333:189872610:189872664:189872760:189872868,	189872611	189872664	189872623	189872623	Nonsense_Mutation	C	T	p.Q1126*
BRCA	TCGA-A8-A09B-01	COL5A3	ENST00000264828.3	chr19	10083594:10083702:10084245:10084299:10084431:10084485,	10084246	10084299	10084293	10084293	Nonsense_Mutation	G	A	p.R1207*
BRCA	TCGA-A2-A0T3-01	COL6A3	ENST00000472056.1	chr2	238287278:238287878:238289557:238290142:238305369:238305460,238285760:238285987:238289557:238290142:238296224:238296720,238285760:238285987:238289557:238290142:238305369:238305405,	238289558	238290142	238290029	238290029	Nonsense_Mutation	C	A	p.E476*
BRCA	TCGA-A2-A0YK-01	COPS6	ENST00000303904.3,ENST00000418625.1,ENST00000496358.1	chr7	99686915:99687038:99687237:99687369:99688021:99688110,	99687238	99687369	99687264	99687264	Nonsense_Mutation	G	T	p.E77*
BRCA	TCGA-E2-A14R-01	CROCC	ENST00000375541.5,ENST00000445545.2,ENST00000492631.1,ENST00000467938.1	chr1	17265403:17265637:17266388:17266588:17270594:17270777,	17266389	17266588	17266458	17266458	Nonsense_Mutation	G	T	p.E560*
BRCA	TCGA-D8-A1JM-01	CSNK1G3	ENST00000345990.4,ENST00000395411.1	chr5	122847953:122848264:122881110:122881535:122888800:122888841,	122881111	122881535	122881422	122881422	Nonsense_Mutation	C	A	p.S22*
BRCA	TCGA-E2-A156-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67644796	67644796	Nonsense_Mutation	G	T	p.E21*
BRCA	TCGA-AN-A0AT-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645308	67645308	Nonsense_Mutation	G	A	p.W191*
BRCA	TCGA-C8-A12T-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655431	67655431	Nonsense_Mutation	G	T	p.E432*
BRCA	TCGA-A8-A095-01	CTH	ENST00000464926.1,ENST00000411986.2,ENST00000370938.3	chr1	70887248:70887358:70889967:70890099:70895476:70895534,	70889968	70890099	70890019	70890019	Nonsense_Mutation	G	T	p.E170*
BRCA	TCGA-A8-A09Q-01	CTH	ENST00000464926.1,ENST00000411986.2,ENST00000370938.3	chr1	70889967:70890099:70895476:70895534:70895999:70896077,	70895477	70895534	70895527	70895527	Nonsense_Mutation	C	G	p.Y213*
BRCA	TCGA-EW-A1OV-01	CTNNA1	ENST00000518825.1,ENST00000520158.1,ENST00000519309.1,ENST00000302763.7	chr5	138118865:138119061:138145726:138145893:138147871:138147991,	138145727	138145893	138145810	138145810	Nonsense_Mutation	C	T	p.R129*
BRCA	TCGA-E9-A1N3-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000558836.1,ENST00000606749.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000393824.3	chr7	101713618:101713697:101740643:101740781:101747615:101747739,	101740644	101740781	101740745	101740745	Nonsense_Mutation	G	T	p.E124*
BRCA	TCGA-A7-A0CG-01	CXorf58	ENST00000379211.3	chrX	23933816:23933911:23934333:23934445:23945355:23945487,	23934334	23934445	23934438	23934438	Nonsense_Mutation	C	A	p.S139*
BRCA	TCGA-AR-A0TX-01	CYP4Z1	ENST00000334194.3	chr1	47571799:47571933:47581200:47581265:47582321:47582404,	47581201	47581265	47581263	47581263	Nonsense_Mutation	C	T	p.Q422*
BRCA	TCGA-EW-A1J5-01	CYP7B1	ENST00000310193.3	chr8	65517238:65517414:65527582:65527789:65528247:65528371,	65527583	65527789	65527649	65527649	Nonsense_Mutation	G	A	p.Q331*
BRCA	TCGA-AR-A0U3-01	DAO	ENST00000547122.1,ENST00000549215.1,ENST00000547768.1,ENST00000228476.3	chr12	109286757:109286812:109288038:109288143:109290781:109290864,	109288039	109288143	109288102	109288102	Nonsense_Mutation	C	T	p.R191*
BRCA	TCGA-C8-A274-01	DCAF11	ENST00000557802.1,ENST00000396936.1	chr14	24586876:24586941:24587263:24587364:24587596:24587645,24586542:24586602:24587263:24587364:24587596:24587645,	24587264	24587364	24587304	24587304	Nonsense_Mutation	C	T	p.Q173*
BRCA	TCGA-E2-A14R-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47888762:47888838:47888921:47889026:47889270:47889446,	47888922	47889026	47889002	47889002	Nonsense_Mutation	G	T	p.E696*
BRCA	TCGA-A8-A06R-01	DIS3L	ENST00000530537.1,ENST00000319194.5,ENST00000319212.4	chr15	66615830:66615923:66618168:66618702:66621307:66621462,	66618169	66618702	66618592	66618592	Nonsense_Mutation	G	A	p.W614*
BRCA	TCGA-A2-A0CX-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000392381.3,ENST00000447466.1,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4	chr3	196842908:196842954:196846280:196846401:196857397:196857542,	196846281	196846401	196846393	196846393	Nonsense_Mutation	G	A	p.Q425*
BRCA	TCGA-AR-A0TX-01	DLG1	ENST00000448528.2,ENST00000419553.1,ENST00000419227.1,ENST00000412364.2,ENST00000486877.1,ENST00000419354.1,ENST00000314062.3,ENST00000392382.2,ENST00000450955.1,ENST00000392380.2,ENST00000456699.2,ENST00000392381.3,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4,ENST00000436682.1	chr3	197009549:197009716:197023216:197023348:197024056:197024075,	197023217	197023348	197023229	197023229	Nonsense_Mutation	G	A	p.Q47*
BRCA	TCGA-D8-A1Y1-01	DLG2	ENST00000398309.2,ENST00000543673.1,ENST00000420775.2,ENST00000280241.8,ENST00000376104.2,ENST00000531015.1	chr11	83183769:83183820:83195171:83195271:83243750:83243826,	83195172	83195271	83195172	83195172	Nonsense_Mutation	G	A	p.R765*
BRCA	TCGA-AN-A0FT-01	DMD	ENST00000493412.1,ENST00000357033.4,ENST00000378677.2	chrX	32361250:32361403:32364059:32364197:32366522:32366627,	32364060	32364197	32364092	32364092	Nonsense_Mutation	G	A	p.Q1852*
BRCA	TCGA-EW-A1J5-01	DMGDH	ENST00000524206.1,ENST00000255189.3	chr5	78347109:78347314:78350006:78350171:78351632:78351727,	78350007	78350171	78350099	78350099	Nonsense_Mutation	G	A	p.Q150*
BRCA	TCGA-C8-A12O-01	DNAH17	ENST00000389840.5,ENST00000585328.1	chr17	76486780:76486929:76487524:76487652:76488714:76488847,	76487525	76487652	76487632	76487632	Nonsense_Mutation	G	A	p.R2174*
BRCA	TCGA-AR-A1AQ-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749476	196749476	Nonsense_Mutation	G	A	p.R1866*
BRCA	TCGA-D8-A1JP-01	DNAI1	ENST00000442556.1,ENST00000242317.4	chr9	34513141:34513189:34514391:34514540:34514637:34514737,	34514392	34514540	34514447	34514447	Nonsense_Mutation	C	G	p.S542*
BRCA	TCGA-E9-A22E-01	DNAI1	ENST00000442556.1,ENST00000242317.4	chr9	34513141:34513189:34514391:34514540:34514637:34514737,	34514392	34514540	34514510	34514510	Nonsense_Mutation	G	A	p.W563*
BRCA	TCGA-AR-A0U4-01	DNAI2	ENST00000579490.1,ENST00000307504.5,ENST00000311014.6,ENST00000579055.1,ENST00000582036.1,ENST00000446837.2	chr17	72285732:72285875:72287158:72287272:72295856:72295996,	72287159	72287272	72287263	72287263	Nonsense_Mutation	G	T	p.G239*
BRCA	TCGA-BH-A18P-01	DNAJA3	ENST00000574895.1,ENST00000573120.1,ENST00000355296.4	chr16	4476048:4476093:4484384:4484518:4487402:4487486,	4484385	4484518	4484516	4484516	Nonsense_Mutation	C	T	p.Q115*
BRCA	TCGA-AR-A1AV-01	DNAJB5	ENST00000335998.3	chr9	34989745:34989828:34990664:34990809:34993196:34993329,	34990665	34990809	34990767	34990767	Nonsense_Mutation	T	G	p.L47*
BRCA	TCGA-AR-A1AN-01	DNAJC1	ENST00000376980.3	chr10	22208831:22208858:22217434:22217481:22217968:22218070,22209726:22209892:22217434:22217481:22217968:22218070,	22217435	22217481	22217445	22217445	Nonsense_Mutation	G	A	p.R121*
BRCA	TCGA-EW-A1J5-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000414834.2,ENST00000546649.1,ENST00000546757.1,ENST00000358214.5,ENST00000547312.1,ENST00000553031.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1	chr12	32893342:32893452:32895522:32895682:32896287:32896515,	32895523	32895682	32895575	32895575	Nonsense_Mutation	C	T	p.Q683*
BRCA	TCGA-EW-A1J5-01	DONSON	ENST00000457359.1,ENST00000442660.1,ENST00000303071.5,ENST00000303113.6,ENST00000417871.1,ENST00000437395.1	chr21	34950547:34950750:34951655:34951868:34953607:34953693,	34951656	34951868	34951791	34951791	Nonsense_Mutation	G	C	p.S447*
BRCA	TCGA-EW-A1OZ-01	DTNB	ENST00000405222.1,ENST00000493538.1,ENST00000407038.3,ENST00000349996.6,ENST00000545439.1,ENST00000485845.1,ENST00000398951.2,ENST00000288642.8,ENST00000303659.4,ENST00000406818.3,ENST00000407661.3,ENST00000407186.1,ENST00000404103.3	chr2	25851051:25851253:25861882:25861963:25875462:25875529,	25861883	25861963	25861883	25861883	Nonsense_Mutation	G	A	p.Q50*
BRCA	TCGA-B6-A0RH-01	DTNB	ENST00000405222.1,ENST00000493538.1,ENST00000407038.3,ENST00000349996.6,ENST00000545439.1,ENST00000485845.1,ENST00000398951.2,ENST00000288642.8,ENST00000303659.4,ENST00000406818.3,ENST00000407661.3,ENST00000407186.1,ENST00000404103.3	chr2	25851051:25851253:25861882:25861963:25875462:25875529,	25861883	25861963	25861892	25861892	Nonsense_Mutation	G	A	p.R47*
BRCA	TCGA-AR-A0TY-01	EEA1	ENST00000322349.8	chr12	93164412:93169909:93170619:93170718:93171318:93171439,	93170620	93170718	93170706	93170706	Nonsense_Mutation	G	A	p.Q1343*
BRCA	TCGA-BH-A0AY-01	EEF2K	ENST00000263026.5	chr16	22284946:22285071:22291518:22291697:22295207:22297954,	22291519	22291697	22291592	22291592	Nonsense_Mutation	G	T	p.E655*
BRCA	TCGA-D8-A1JK-01	EIF2AK4	ENST00000263791.5,ENST00000559624.1,ENST00000382727.2	chr15	40241316:40241469:40246104:40246185:40247820:40247969,	40246105	40246185	40246168	40246168	Nonsense_Mutation	A	T	p.K193*
BRCA	TCGA-E2-A15K-06	EIF3H	ENST00000522800.1,ENST00000276682.4,ENST00000521861.1,ENST00000518995.1	chr8	117669458:117669553:117671051:117671219:117738254:117738285,	117671052	117671219	117671073	117671073	Nonsense_Mutation	C	A	p.E146*
BRCA	TCGA-BH-A0DZ-01	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41506169:41508164:41515056:41515506:41517087:41517280,	41515057	41515506	41515219	41515219	Nonsense_Mutation	G	C	p.S365*
BRCA	TCGA-E9-A1RF-01	ELOVL5	ENST00000304434.6,ENST00000542638.1,ENST00000370918.4	chr6	53139922:53140059:53140976:53141054:53156573:53156583,	53140977	53141054	53140987	53140987	Nonsense_Mutation	G	C	p.S105*
BRCA	TCGA-E2-A1LB-01	EMCN	ENST00000296420.4,ENST00000305864.3,ENST00000502569.1,ENST00000512253.1,ENST00000502327.1,ENST00000511970.1	chr4	101386657:101386696:101396194:101396266:101401073:101401196,	101396195	101396266	101396227	101396227	Nonsense_Mutation	G	C	p.S76*
BRCA	TCGA-AN-A0AJ-01	EML4	ENST00000402711.2,ENST00000409040.1,ENST00000401738.3	chr2	42396600:42396776:42472644:42472827:42483640:42483770,	42472645	42472827	42472824	42472824	Nonsense_Mutation	A	T	p.K69*
BRCA	TCGA-A8-A07G-01	ENG	ENST00000344849.3	chr9	130591965:130592106:130605372:130605524:130616567:130616915,	130605373	130605524	130605384	130605384	Nonsense_Mutation	C	A	p.E70*
BRCA	TCGA-BH-A0HO-01	ENTHD1	ENST00000325157.6	chr22	40139048:40140288:40161227:40161614:40216997:40217118,	40161228	40161614	40161426	40161426	Nonsense_Mutation	C	A	p.E341*
BRCA	TCGA-BH-A0HA-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607728	46607728	Nonsense_Mutation	G	A	p.W639*
BRCA	TCGA-C8-A132-01	ERCC1	ENST00000013807.5,ENST00000589165.1,ENST00000300853.3,ENST00000591636.1,ENST00000588300.1,ENST00000340192.7,ENST00000592083.1,ENST00000592905.1,ENST00000589214.1,ENST00000592023.1	chr19	45923581:45923685:45924435:45924651:45926527:45926639,	45924436	45924651	45924518	45924518	Nonsense_Mutation	G	C	p.S80*
BRCA	TCGA-A1-A0SH-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154369	19154369	Nonsense_Mutation	G	A	p.Q146*
BRCA	TCGA-D8-A1JN-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53680434	53680434	Nonsense_Mutation	C	G	p.S1305*
BRCA	TCGA-E9-A1R4-01	ETV7	ENST00000373737.4,ENST00000340181.4,ENST00000339796.5	chr6	36341229:36341355:36343647:36343812:36353310:36353446,	36343648	36343812	36343650	36343650	Nonsense_Mutation	G	C	p.S102*
BRCA	TCGA-A2-A0CX-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000490315.1,ENST00000331029.7,ENST00000360091.3,ENST00000332035.6,ENST00000483629.1,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29692228:29692358:29693816:29693939:29694722:29694791,	29693817	29693939	29693828	29693828	Nonsense_Mutation	C	T	p.Q436*
BRCA	TCGA-A8-A09A-01	EXT1	ENST00000437196.1,ENST00000378204.2	chr8	118834703:118834836:118842468:118842588:118847682:118847790,	118842469	118842588	118842508	118842508	Nonsense_Mutation	A	C	p.Y415*
BRCA	TCGA-A1-A0SI-01	FAHD2B	ENST00000483657.1,ENST00000272610.3	chr2	97755845:97756062:97757198:97757449:97760437:97760557,	97757199	97757449	97757395	97757395	Nonsense_Mutation	G	A	p.Q17*
BRCA	TCGA-C8-A1HM-01	FARP1	ENST00000376586.2,ENST00000319562.6	chr13	98795733:98795746:98865473:98865667:98996015:98996066,	98865474	98865667	98865603	98865603	Nonsense_Mutation	C	G	p.S36*
BRCA	TCGA-C8-A134-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242375895:242375953:242380718:242380971:242396161:242396337,	242380719	242380971	242380741	242380741	Nonsense_Mutation	T	A	p.L394*
BRCA	TCGA-D8-A1XO-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924228	150924228	Nonsense_Mutation	G	A	p.Q2154*
BRCA	TCGA-E2-A15A-01	FBXL17	ENST00000359660.5,ENST00000542267.1	chr5	107194745:107197561:107216737:107216880:107356625:107356702,	107216738	107216880	107216863	107216863	Nonsense_Mutation	G	A	p.R216*
BRCA	TCGA-AN-A0AM-01	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5540158	5540158	Nonsense_Mutation	G	T	p.S581*
BRCA	TCGA-A8-A08F-01	FBXW4	ENST00000331272.7,ENST00000457105.2	chr10	103384503:103384567:103427642:103427737:103432671:103432804,	103427643	103427737	103427732	103427732	Nonsense_Mutation	C	T	p.W227*
BRCA	TCGA-E2-A15H-01	FGD4	ENST00000534526.2,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000493087.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32777909:32778002:32778587:32778713:32786482:32786623,	32778588	32778713	32778624	32778624	Nonsense_Mutation	C	T	p.R558*
BRCA	TCGA-BH-A18V-01	FGF7	ENST00000560765.2	chr15	49715456:49715637:49716228:49716780:49775347:49775451,	49716229	49716780	49716609	49716609	Nonsense_Mutation	C	T	p.Q39*
BRCA	TCGA-E9-A295-01	FGG	ENST00000473393.1,ENST00000404648.3,ENST00000407946.1,ENST00000405164.1,ENST00000336098.3,ENST00000393846.2,ENST00000464532.1	chr4	155532956:155533050:155533169:155533353:155533542:155533587,	155533170	155533353	155533233	155533233	Nonsense_Mutation	C	A	p.E82*
BRCA	TCGA-E9-A295-01	FGG	ENST00000443553.1	chr4	155532956:155533050:155533169:155533319:155533542:155533587,	155533170	155533319	155533233	155533233	Nonsense_Mutation	C	A	p.E82*
BRCA	TCGA-BH-A1F8-01	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3	chr1	154956317:154956542:154960580:154961325:154962035:154962183,	154960581	154961325	154961309	154961309	Nonsense_Mutation	C	G	p.Y367*
BRCA	TCGA-A8-A07L-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670216	186670216	Nonsense_Mutation	C	T	p.Q5395*
BRCA	TCGA-A2-A0EX-01	FXYD5	ENST00000392219.2,ENST00000588699.1,ENST00000423817.3,ENST00000541435.2,ENST00000590686.1,ENST00000342879.3,ENST00000543307.1,ENST00000496493.1	chr19	35648328:35648404:35649246:35649303:35651611:35651704,	35649247	35649303	35649292	35649292	Nonsense_Mutation	G	A	p.W63*
BRCA	TCGA-A8-A08R-01	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000431076.1	chr2	155102324:155102495:155115533:155115651:155157921:155158102,	155115534	155115651	155115571	155115571	Nonsense_Mutation	A	T	p.R299*
BRCA	TCGA-A2-A25A-01	GATAD2A	ENST00000429563.2,ENST00000418032.3	chr19	19576289:19576423:19603389:19603521:19606562:19606694,	19603390	19603521	19603408	19603408	Nonsense_Mutation	C	T	p.R141*
BRCA	TCGA-D8-A1JK-01	GBGT1	ENST00000372038.3	chr9	136031287:136031323:136031401:136031489:136036853:136036919,	136031402	136031489	136031465	136031465	Nonsense_Mutation	G	T	p.C54*
BRCA	TCGA-D8-A27M-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086705	109086705	Nonsense_Mutation	C	A	p.S307*
BRCA	TCGA-E2-A10C-01	GDPD2	ENST00000453994.2	chrX	69649764:69649913:69650823:69650976:69652156:69652304,	69650824	69650976	69650936	69650936	Nonsense_Mutation	C	T	p.Q474*
BRCA	TCGA-AO-A03N-01	GGCT	ENST00000409436.1,ENST00000426081.1	chr7	30536692:30536851:30538418:30538554:30540151:30540296,30537356:30537512:30538418:30538554:30540151:30540296,	30538419	30538554	30538452	30538452	Nonsense_Mutation	G	C	p.Y130*
BRCA	TCGA-A8-A092-01	GLE1	ENST00000309971.4,ENST00000372770.4	chr9	131271154:131271376:131277807:131277918:131284946:131285095,	131277808	131277918	131277847	131277847	Nonsense_Mutation	C	T	p.Q121*
BRCA	TCGA-AO-A12G-01	GLI3	ENST00000479210.1,ENST00000395925.3	chr7	42079636:42079838:42084982:42085129:42088089:42088295,	42084983	42085129	42085091	42085091	Nonsense_Mutation	G	A	p.Q240*
BRCA	TCGA-BH-A18P-01	GLS	ENST00000320717.3,ENST00000338435.4	chr2	191759877:191759974:191760329:191760451:191765289:191765419,	191760330	191760451	191760405	191760405	Nonsense_Mutation	C	T	p.Q187*
BRCA	TCGA-E9-A1R5-01	GLUL	ENST00000311223.5,ENST00000339526.4,ENST00000417584.2,ENST00000331872.6,ENST00000484996.1	chr1	182354894:182355022:182355390:182355537:182356265:182356427,	182355391	182355537	182355487	182355487	Nonsense_Mutation	G	A	p.Q127*
BRCA	TCGA-BH-A0DZ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367848	37367848	Nonsense_Mutation	C	T	p.Q1491*
BRCA	TCGA-BH-A0DZ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368485	37368485	Nonsense_Mutation	C	G	p.S1703*
BRCA	TCGA-AO-A0JM-01	GOSR1	ENST00000427274.2,ENST00000414833.2,ENST00000467337.2,ENST00000225724.5,ENST00000451249.2	chr17	28811680:28811788:28817143:28817235:28819696:28819771,	28817144	28817235	28817222	28817222	Nonsense_Mutation	C	T	p.R143*
BRCA	TCGA-B6-A0IH-01	GRB10	ENST00000401949.1,ENST00000402578.1,ENST00000439599.1,ENST00000402497.1,ENST00000335866.3,ENST00000398810.2,ENST00000398812.2,ENST00000403097.1,ENST00000407526.1,ENST00000406641.1,ENST00000357271.5	chr7	50660575:50660795:50663133:50663227:50671694:50671782,	50663134	50663227	50663154	50663154	Nonsense_Mutation	T	A	p.K540*
BRCA	TCGA-B6-A0RO-01	GRHL2	ENST00000395927.1,ENST00000251808.3	chr8	102564942:102565010:102570646:102571040:102582566:102582622,	102570647	102571040	102570699	102570699	Nonsense_Mutation	C	T	p.R113*
BRCA	TCGA-BH-A0HA-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468223	86468223	Nonsense_Mutation	C	T	p.R465*
BRCA	TCGA-BH-A18V-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173298	126173298	Nonsense_Mutation	C	T	p.W713*
BRCA	TCGA-A8-A081-01	GTF2IRD2	ENST00000405086.2,ENST00000361071.5,ENST00000453619.2	chr7	74236954:74236983:74237151:74237335:74239461:74239581,	74237152	74237335	74237282	74237282	Nonsense_Mutation	G	A	p.R138*
BRCA	TCGA-D8-A27F-01	GYPB	ENST00000429670.2,ENST00000508618.1,ENST00000507009.1,ENST00000503255.1,ENST00000502664.1	chr4	144920563:144920602:144922337:144922436:144940403:144940477,	144922338	144922436	144922352	144922352	Nonsense_Mutation	G	T	p.S41*
BRCA	TCGA-A8-A06X-01	HCLS1	ENST00000495491.1,ENST00000314583.3,ENST00000481314.1,ENST00000428394.2,ENST00000487290.1	chr3	121366165:121366295:121376125:121376199:121377110:121377194,	121376126	121376199	121376169	121376169	Nonsense_Mutation	C	A	p.G39*
BRCA	TCGA-AO-A03V-01	HEATR1	ENST00000366582.3	chr1	236737501:236737633:236737960:236738203:236739518:236739677,	236737961	236738203	236738059	236738059	Nonsense_Mutation	C	A	p.E1077*
BRCA	TCGA-A8-A09A-01	HIPK2	ENST00000428878.2	chr7	139316347:139316471:139415730:139416814:139477403:139477517,	139415731	139416814	139416107	139416107	Nonsense_Mutation	C	A	p.E243*
BRCA	TCGA-A2-A0EX-01	HK1	ENST00000360289.2,ENST00000404387.2,ENST00000448642.2,ENST00000298649.3,ENST00000359426.6	chr10	71152034:71152064:71154705:71154861:71158350:71158584,	71154706	71154861	71154851	71154851	Nonsense_Mutation	C	T	p.Q793*
BRCA	TCGA-A8-A07G-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232870:26232993:26233194:26233314:26235466:26235478,	26233195	26233314	26233303	26233303	Nonsense_Mutation	C	A	p.G257*
BRCA	TCGA-EW-A1J6-01	HSDL2	ENST00000488101.1,ENST00000398803.1,ENST00000262542.7,ENST00000467434.1,ENST00000398805.3	chr9	115181139:115181238:115200710:115200905:115203978:115204050,	115200711	115200905	115200812	115200812	Nonsense_Mutation	A	T	p.K234*
BRCA	TCGA-A1-A0SH-01	HYDIN	ENST00000393567.2	chr16	70986323:70986538:70989277:70989451:70993549:70993723,	70989278	70989451	70989287	70989287	Nonsense_Mutation	C	A	p.E2102*
BRCA	TCGA-AO-A03O-01	IARS	ENST00000375629.3,ENST00000375643.3,ENST00000443024.2,ENST00000447699.2	chr9	94984801:94984954:94985627:94985771:94991282:94991408,	94985628	94985771	94985652	94985652	Nonsense_Mutation	G	A	p.Q1177*
BRCA	TCGA-A8-A07E-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000502304.1,ENST00000506507.1,ENST00000509195.1,ENST00000347300.2,ENST00000512157.1,ENST00000348417.2	chr3	129170756:129170841:129180070:129180147:129182402:129182465,129177441:129177520:129180070:129180147:129182402:129182465,	129180071	129180147	129180117	129180117	Nonsense_Mutation	C	T	p.Q158*
BRCA	TCGA-A8-A0AD-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42265786:42265893:42271118:42271264:42275575:42275857,	42271119	42271264	42271262	42271262	Nonsense_Mutation	C	T	p.Q422*
BRCA	TCGA-E2-A15S-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130408572:130408851:130408972:130409260:130409451:130409739,	130408973	130409260	130409100	130409100	Nonsense_Mutation	G	T	p.Y1115*
BRCA	TCGA-A8-A07B-01	IL11RA	ENST00000556792.1,ENST00000478802.2,ENST00000441545.2,ENST00000602473.1,ENST00000378817.4,ENST00000318041.9,ENST00000555981.1,ENST00000555003.1,ENST00000556531.1	chr9	34655214:34655314:34655601:34655662:34657031:34657146,34655214:34655314:34655601:34655662:34656735:34656905,	34655602	34655662	34655616	34655616	Nonsense_Mutation	C	T	p.Q39*
BRCA	TCGA-A7-A26H-01	IL20RA	ENST00000367748.1,ENST00000468393.1	chr6	137329735:137329880:137330453:137330629:137338104:137338240,	137330454	137330629	137330612	137330612	Nonsense_Mutation	C	A	p.E141*
BRCA	TCGA-EW-A1P4-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134459371:134459472:134463921:134464009:134503895:134503959,	134463922	134464009	134463965	134463965	Nonsense_Mutation	C	T	p.R88*
BRCA	TCGA-A2-A0CT-01	INPP5F	ENST00000369080.3,ENST00000361976.2	chr10	121582582:121582711:121583326:121583414:121586142:121587837,	121583327	121583414	121583335	121583335	Nonsense_Mutation	C	T	p.Q724*
BRCA	TCGA-BH-A0HA-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000520845.1,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95866032:95866143:95869004:95869206:95871738:95871860,	95869005	95869206	95869179	95869179	Nonsense_Mutation	C	T	p.R643*
BRCA	TCGA-AO-A129-01	IQGAP2	ENST00000504477.1,ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3	chr5	75991278:75991491:75993811:75993972:75996900:75997038,	75993812	75993972	75993917	75993917	Nonsense_Mutation	C	T	p.Q1438*
BRCA	TCGA-AO-A0JE-01	IRF9	ENST00000396864.3,ENST00000561342.1	chr14	24633271:24633343:24633822:24634164:24635055:24635171,	24633823	24634164	24633978	24633978	Nonsense_Mutation	C	T	p.Q269*
BRCA	TCGA-A8-A07C-01	ITPKB	ENST00000429204.1,ENST00000272117.3	chr1	226819390:226822587:226825379:226825451:226827257:226827359,	226825380	226825451	226825421	226825421	Nonsense_Mutation	G	A	p.R862*
BRCA	TCGA-A8-A09A-01	JAK2	ENST00000381652.3	chr9	4985939:4986022:5021962:5022213:5029782:5029906,	5021963	5022213	5022119	5022119	Nonsense_Mutation	C	A	p.Y44*
BRCA	TCGA-AN-A0FT-01	KCNN2	ENST00000512097.3,ENST00000264773.3	chr5	113699602:113699698:113740134:113740553:113798745:113798887,	113740135	113740553	113740533	113740533	Nonsense_Mutation	G	A	p.W327*
BRCA	TCGA-B6-A0IK-01	KCNT2	ENST00000294725.9,ENST00000609185.1,ENST00000610076.1,ENST00000367433.5,ENST00000498426.1,ENST00000367431.4	chr1	196254786:196254888:196274363:196274475:196285021:196285151,	196274364	196274475	196274447	196274447	Nonsense_Mutation	C	A	p.E838*
BRCA	TCGA-E9-A1R7-01	KCTD3	ENST00000259154.4	chr1	215759837:215760028:215768697:215768813:215775208:215775296,	215768698	215768813	215768802	215768802	Nonsense_Mutation	C	T	p.Q308*
BRCA	TCGA-EW-A1J5-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600510	10600510	Nonsense_Mutation	C	A	p.E449*
BRCA	TCGA-EW-A1PG-01	KLF7	ENST00000423015.1	chr2	207953181:207953305:207988699:207989128:208030190:208030295,	207988700	207989128	207988824	207988824	Nonsense_Mutation	A	T	p.L136*
BRCA	TCGA-D8-A1Y3-01	KLHL8	ENST00000498875.2	chr4	88104354:88104541:88106402:88106723:88116475:88116842,	88106403	88106723	88106441	88106441	Nonsense_Mutation	G	A	p.Q243*
BRCA	TCGA-D8-A1Y3-01	KLHL8	ENST00000273963.5,ENST00000512111.1	chr4	88104354:88104541:88106402:88106951:88116475:88116842,	88106403	88106951	88106441	88106441	Nonsense_Mutation	G	A	p.Q243*
BRCA	TCGA-AR-A1AR-01	KLRF1	ENST00000279544.3	chr12	9984911:9985010:9985898:9986048:9994407:9994550,	9985899	9986048	9985925	9985925	Nonsense_Mutation	C	T	p.Q71*
BRCA	TCGA-E2-A15M-01	LAMA5	ENST00000252999.3	chr20	60889610:60889781:60889854:60890003:60890083:60890263,	60889855	60890003	60889977	60889977	Nonsense_Mutation	G	A	p.Q2692*
BRCA	TCGA-E2-A159-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107592453:107592668:107593974:107594199:107595911:107596075,	107593975	107594199	107594139	107594139	Nonsense_Mutation	G	T	p.S972*
BRCA	TCGA-E9-A1RG-01	LAMB2	ENST00000418109.1,ENST00000305544.4,ENST00000477701.1	chr3	49162719:49162917:49163179:49163323:49163399:49163592,	49163180	49163323	49163267	49163267	Nonsense_Mutation	G	A	p.Q801*
BRCA	TCGA-B6-A0RE-01	LAPTM4B	ENST00000521545.2	chr8	98788076:98788336:98817580:98817692:98827555:98827629,	98817581	98817692	98817648	98817648	Nonsense_Mutation	C	G	p.S147*
BRCA	TCGA-BH-A0W7-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000467936.1,ENST00000265537.3	chr3	45559454:45559564:45561710:45561788:45565488:45565600,	45561711	45561788	45561759	45561759	Nonsense_Mutation	C	T	p.Q755*
BRCA	TCGA-BH-A18U-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40795105	40795105	Nonsense_Mutation	G	A	p.Q212*
BRCA	TCGA-A2-A0T3-01	LHFPL4	ENST00000287585.6	chr3	9543480:9543995:9547650:9547887:9593957:9593991,	9547651	9547887	9547779	9547779	Nonsense_Mutation	G	T	p.S172*
BRCA	TCGA-D8-A1JN-01	LIFR	ENST00000506003.1,ENST00000263409.4,ENST00000453190.2	chr5	38489179:38489347:38490291:38490393:38493707:38493887,	38490292	38490393	38490331	38490331	Nonsense_Mutation	G	A	p.Q710*
BRCA	TCGA-A2-A0EY-01	LMAN1L	ENST00000379709.3	chr15	75111058:75111158:75111492:75111633:75112975:75113108,	75111493	75111633	75111590	75111590	Nonsense_Mutation	C	G	p.S232*
BRCA	TCGA-B6-A0IJ-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97822389	97822389	Nonsense_Mutation	C	G	p.S871*
BRCA	TCGA-AQ-A1H2-01	LPCAT4	ENST00000563240.1,ENST00000314891.6	chr15	34654396:34654522:34654773:34654856:34654982:34655037,	34654774	34654856	34654803	34654803	Nonsense_Mutation	A	T	p.Y285*
BRCA	TCGA-E2-A15I-01	LPO	ENST00000262290.4,ENST00000580890.1,ENST00000543544.1,ENST00000421678.2,ENST00000582328.1	chr17	56329650:56329867:56332171:56332332:56342082:56342335,	56332172	56332332	56332273	56332273	Nonsense_Mutation	C	T	p.Q403*
BRCA	TCGA-BH-A0B4-01	LRRC23	ENST00000007969.8,ENST00000431207.1,ENST00000451681.1,ENST00000443597.2	chr12	7016485:7016609:7019053:7019190:7021893:7021975,	7019054	7019190	7019120	7019120	Nonsense_Mutation	C	T	p.R230*
BRCA	TCGA-E2-A10A-01	LTBP4	ENST00000597816.1,ENST00000599724.1,ENST00000318809.7	chr19	41120220:41120352:41125251:41125398:41128305:41128310,41120220:41120352:41125251:41125398:41129508:41129538,	41125252	41125398	41125311	41125311	Nonsense_Mutation	G	T	p.E1110*
BRCA	TCGA-AO-A0J6-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000601032.1,ENST00000243562.9,ENST00000396819.3,ENST00000308370.7,ENST00000545697.1,ENST00000318809.7,ENST00000601209.1,ENST00000598677.1,ENST00000595118.1,ENST00000602240.1	chr19	41131761:41131914:41132879:41133260:41133609:41133625,	41132880	41133260	41133242	41133242	Nonsense_Mutation	G	T	p.E1516*
BRCA	TCGA-A8-A09G-01	LYPD6	ENST00000334166.4,ENST00000409381.1	chr2	150305562:150305661:150325158:150325289:150327196:150327609,	150325159	150325289	150325179	150325179	Nonsense_Mutation	C	T	p.Q80*
BRCA	TCGA-D8-A1J9-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39823046:39823565:39824368:39824545:39824812:39824936,	39824369	39824545	39824490	39824490	Nonsense_Mutation	C	G	p.S2462*
BRCA	TCGA-AO-A0J9-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798343	39798343	Nonsense_Mutation	C	G	p.S468*
BRCA	TCGA-A1-A0SI-01	MAN2B1	ENST00000466794.1,ENST00000221363.4,ENST00000456935.2	chr19	12760154:12760242:12760726:12760828:12760917:12761036,	12760727	12760828	12760743	12760743	Nonsense_Mutation	C	A	p.E751*
BRCA	TCGA-D8-A1X5-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210560612	210560612	Nonsense_Mutation	G	T	p.E1240*
BRCA	TCGA-D8-A1X5-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210560612	210560612	Nonsense_Mutation	G	T	p.E1240*
BRCA	TCGA-C8-A1HO-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602375.1,ENST00000582377.1,ENST00000602811.1,ENST00000582183.1,ENST00000579089.1,ENST00000602305.1,ENST00000581941.1,ENST00000602537.1	chr17	11998918:11999011:12011106:12011226:12013691:12013743,	12011107	12011226	12011212	12011212	Nonsense_Mutation	A	T	p.K207*
BRCA	TCGA-E2-A1IG-01	MAP2K4	ENST00000353533.5,ENST00000602686.1,ENST00000415385.3,ENST00000602375.1,ENST00000602811.1,ENST00000536413.2,ENST00000602305.1	chr17	12028610:12028688:12032455:12032604:12043155:12043201,	12032456	12032604	12032459	12032459	Nonsense_Mutation	G	T	p.E299*
BRCA	TCGA-A8-A07Z-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602811.1,ENST00000581941.1,ENST00000602537.1	chr17	11924292:11924318:11998891:11999011:12013691:12013743,11958205:11958308:11998891:11999011:12011106:12011226,11984672:11984847:11998891:11999011:12011106:12011226,	11998892	11999011	11998993	11998993	Nonsense_Mutation	T	A	p.Y165*
BRCA	TCGA-BH-A0W7-01	MAP2K4	ENST00000353533.5,ENST00000602686.1,ENST00000415385.3,ENST00000602375.1,ENST00000602811.1,ENST00000536413.2,ENST00000602305.1	chr17	12028610:12028688:12032455:12032604:12043155:12043201,	12032456	12032604	12032510	12032510	Nonsense_Mutation	C	T	p.Q316*
BRCA	TCGA-A8-A09B-01	MAP3K1	ENST00000399503.3	chr5	56161166:56161283:56161655:56161804:56167736:56167858,	56161656	56161804	56161795	56161795	Nonsense_Mutation	C	A	p.S431*
BRCA	TCGA-A2-A0CP-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56170973	56170973	Nonsense_Mutation	G	T	p.E601*
BRCA	TCGA-AN-A03X-01	MAP3K1	ENST00000399503.3	chr5	56170858:56171137:56174806:56174928:56176537:56176629,	56174807	56174928	56174909	56174909	Nonsense_Mutation	A	T	p.K690*
BRCA	TCGA-A2-A25A-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470388	161470388	Nonsense_Mutation	G	T	p.E362*
BRCA	TCGA-E2-A152-01	MAP4	ENST00000426837.2	chr3	47918906:47919013:47950527:47953911:47956306:47956429,	47950528	47953911	47951254	47951254	Nonsense_Mutation	C	A	p.E160*
BRCA	TCGA-AN-A0FD-01	MAP4K1	ENST00000589130.1,ENST00000591921.1,ENST00000396857.2,ENST00000591517.1	chr19	39087965:39088024:39088125:39088234:39090564:39090625,	39088126	39088234	39088180	39088180	Nonsense_Mutation	T	A	p.R217*
BRCA	TCGA-EW-A1PD-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247498	149247498	Nonsense_Mutation	G	T	p.E1200*
BRCA	TCGA-AR-A24T-01	MED12	ENST00000333646.6,ENST00000374102.1,ENST00000374080.3	chrX	70352226:70352388:70352694:70352806:70352972:70353062,	70352695	70352806	70352768	70352768	Nonsense_Mutation	G	T	p.E1497*
BRCA	TCGA-E9-A1R5-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60088032	60088032	Nonsense_Mutation	T	A	p.K616*
BRCA	TCGA-D8-A13Y-01	MED8	ENST00000372455.4,ENST00000290663.6,ENST00000460803.1,ENST00000372457.4	chr1	43851648:43851897:43852259:43852341:43852528:43852602,	43852260	43852341	43852271	43852271	Nonsense_Mutation	G	C	p.S161*
BRCA	TCGA-AR-A24X-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42874852:42874983:42875501:42875634:42879658:42879925,	42875502	42875634	42875614	42875614	Nonsense_Mutation	C	T	p.R2350*
BRCA	TCGA-C8-A130-01	METAP2	ENST00000546753.1,ENST00000550777.1,ENST00000551840.1,ENST00000323666.5,ENST00000261220.9	chr12	95897840:95897937:95905670:95905774:95906576:95906692,	95905671	95905774	95905673	95905673	Nonsense_Mutation	A	T	p.K323*
BRCA	TCGA-EW-A1J5-01	MGAT4B	ENST00000518980.1,ENST00000520875.1,ENST00000292591.7,ENST00000523382.1,ENST00000520969.1,ENST00000518778.1,ENST00000337755.5,ENST00000522451.1,ENST00000519836.1	chr5	179225164:179225277:179225346:179225434:179225512:179225576,	179225347	179225434	179225428	179225428	Nonsense_Mutation	G	A	p.Q492*
BRCA	TCGA-BH-A0HA-01	MLH1	ENST00000539477.1,ENST00000432299.1,ENST00000456676.2,ENST00000536378.1,ENST00000441265.1,ENST00000485889.1,ENST00000466900.1,ENST00000231790.2,ENST00000455445.2,ENST00000492474.1	chr3	37038114:37038200:37042445:37042544:37045891:37045965,	37042446	37042544	37042542	37042542	Nonsense_Mutation	G	T	p.E102*
BRCA	TCGA-E2-A15K-01	MLLT10	ENST00000377072.3,ENST00000476557.1,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21823677:21823733:21827761:21827841:21875222:21875277,	21827762	21827841	21827779	21827779	Nonsense_Mutation	C	T	p.Q60*
BRCA	TCGA-E2-A15K-06	MLLT10	ENST00000377072.3,ENST00000476557.1,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21823677:21823733:21827761:21827841:21875222:21875277,	21827762	21827841	21827779	21827779	Nonsense_Mutation	C	T	p.Q60*
BRCA	TCGA-BH-A0E2-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000495130.1,ENST00000377059.3	chr10	21875222:21875277:21884259:21884369:21901276:21901380,	21884260	21884369	21884363	21884363	Nonsense_Mutation	T	A	p.Y133*
BRCA	TCGA-E9-A1RH-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90857362	90857362	Nonsense_Mutation	T	A	p.L844*
BRCA	TCGA-AR-A1AW-01	MPZL1	ENST00000465787.1,ENST00000367853.3,ENST00000359523.2,ENST00000474859.1,ENST00000474729.1	chr1	167734825:167734986:167741511:167741725:167742472:167742605,	167741512	167741725	167741689	167741689	Nonsense_Mutation	C	T	p.Q146*
BRCA	TCGA-A2-A0EO-01	MR1	ENST00000367579.3,ENST00000367580.5	chr1	181019281:181019422:181021370:181021646:181022708:181022813,	181021371	181021646	181021547	181021547	Nonsense_Mutation	C	T	p.Q261*
BRCA	TCGA-A2-A0CL-01	MRC2	ENST00000303375.5,ENST00000583597.1,ENST00000446119.2	chr17	60765649:60765764:60765861:60766025:60766212:60766321,	60765862	60766025	60765922	60765922	Nonsense_Mutation	C	A	p.S1041*
BRCA	TCGA-A1-A0SG-01	MRPL46	ENST00000312475.4	chr15	89002838:89003094:89007933:89008107:89010380:89010620,89002838:89003094:89007933:89008107:89008817:89008978,	89007934	89008107	89008087	89008087	Nonsense_Mutation	G	A	p.R146*
BRCA	TCGA-E9-A1N8-01	MRS2	ENST00000378353.1,ENST00000543597.1,ENST00000378386.3	chr6	24408635:24408672:24409688:24409801:24412449:24412623,	24409689	24409801	24409715	24409715	Nonsense_Mutation	G	T	p.E110*
BRCA	TCGA-AO-A12G-01	MTOR	ENST00000361445.4	chr1	11316048:11316249:11316989:11317222:11318541:11318650,	11316990	11317222	11317205	11317205	Nonsense_Mutation	C	A	p.E97*
BRCA	TCGA-A8-A08L-01	MUC17	ENST00000379439.3	chr7	100692125:100692253:100692604:100692663:100694893:100694962,	100692605	100692663	100692662	100692662	Nonsense_Mutation	C	T	p.R4241*
BRCA	TCGA-C8-A12X-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018368	1018368	Nonsense_Mutation	G	T	p.S1478*
BRCA	TCGA-AO-A03P-01	MVP	ENST00000452209.2,ENST00000570061.1,ENST00000357402.5,ENST00000566859.1,ENST00000395353.1	chr16	29847080:29847119:29848042:29848279:29851498:29851588,	29848043	29848279	29848117	29848117	Nonsense_Mutation	G	A	p.W249*
BRCA	TCGA-E2-A15G-01	MYB	ENST00000525514.1,ENST00000533384.1,ENST00000528345.1,ENST00000525940.1,ENST00000529586.1,ENST00000526889.1,ENST00000525369.1,ENST00000526187.1,ENST00000534121.1,ENST00000528015.1,ENST00000531737.1,ENST00000533837.1,ENST00000442647.2,ENST00000529262.1,ENST00000531519.1,ENST00000526565.1,ENST00000528774.1,ENST00000438901.2,ENST00000528343.1,ENST00000534044.1,ENST00000420123.2,ENST00000339290.5,ENST00000463282.2,ENST00000341911.5,ENST00000527615.1,ENST00000430686.2,ENST00000533624.1,ENST00000525002.1,ENST00000367814.4,ENST00000531845.1,ENST00000367812.2,ENST00000528140.1,ENST00000525477.1,ENST00000533808.1,ENST00000526320.1,ENST00000316528.8	chr6	135510928:135511021:135511264:135511485:135513461:135513696,	135511265	135511485	135511399	135511399	Nonsense_Mutation	G	A	p.W147*
BRCA	TCGA-D8-A27F-01	MYBL1	ENST00000522677.3,ENST00000524176.2	chr8	67485598:67485741:67488241:67488610:67492367:67492598,	67488242	67488610	67488508	67488508	Nonsense_Mutation	C	A	p.E402*
BRCA	TCGA-AR-A1AL-01	MYBPHL	ENST00000357155.1	chr1	109837732:109837919:109838855:109838992:109839404:109839564,	109838856	109838992	109838960	109838960	Nonsense_Mutation	G	A	p.R255*
BRCA	TCGA-A7-A0CE-01	MYCT1	ENST00000532295.1	chr6	153019095:153019233:153042876:153043388:153043897:153044419,	153042877	153043388	153043116	153043116	Nonsense_Mutation	C	T	p.R146*
BRCA	TCGA-A2-A0EM-01	MYEF2	ENST00000267836.6,ENST00000560530.1,ENST00000558289.1,ENST00000324324.7,ENST00000558395.1,ENST00000560172.1	chr15	48435257:48435268:48441228:48441280:48441359:48441523,	48441229	48441280	48441260	48441260	Nonsense_Mutation	C	T	p.W536*
BRCA	TCGA-AQ-A1H2-01	MYH15	ENST00000478998.1,ENST00000273353.3	chr3	108127126:108127251:108129429:108129779:108133078:108133275,	108129430	108129779	108129757	108129757	Nonsense_Mutation	G	A	p.Q1410*
BRCA	TCGA-B6-A0IJ-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16676139:16676263:16680055:16680213:16681417:16681612,	16680056	16680213	16680191	16680191	Nonsense_Mutation	G	C	p.Y1469*
BRCA	TCGA-A8-A07C-01	MYO5C	ENST00000261839.7	chr15	52548835:52548917:52553058:52553324:52556386:52556493,	52553059	52553324	52553129	52553129	Nonsense_Mutation	C	A	p.E415*
BRCA	TCGA-A8-A07C-01	MYO5C	ENST00000443683.2,ENST00000559459.1,ENST00000560809.1,ENST00000558902.1	chr15	52548835:52548917:52553098:52553324:52556386:52556493,	52553099	52553324	52553129	52553129	Nonsense_Mutation	C	A	p.E415*
BRCA	TCGA-E9-A1R4-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204055014:204055112:204058517:204058634:204062024:204062114,	204058518	204058634	204058611	204058611	Nonsense_Mutation	G	T	p.E2310*
BRCA	TCGA-BH-A1FN-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41348497:41348608:41348958:41349123:41352183:41352324,	41348959	41349123	41349048	41349048	Nonsense_Mutation	G	T	p.E651*
BRCA	TCGA-E9-A1RE-01	NCF2	ENST00000367535.3,ENST00000418089.1,ENST00000413720.1,ENST00000367536.1	chr1	183546733:183546842:183556029:183556112:183559290:183559494,	183556030	183556112	183556058	183556058	Nonsense_Mutation	G	A	p.R77*
BRCA	TCGA-D8-A1JG-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33356266:33356389:33364095:33364251:33369923:33370204,	33364096	33364251	33364231	33364231	Nonsense_Mutation	G	A	p.Q86*
BRCA	TCGA-B6-A0I8-01	NCOR1	ENST00000580554.1	chr17	15942830:15942968:15943754:15943808:15950264:15950349,15942830:15942968:15943754:15943808:15950303:15950407,	15943755	15943808	15943800	15943800	Nonsense_Mutation	G	A	p.Q2230*
BRCA	TCGA-B6-A0I8-01	NCOR1	ENST00000579573.2	chr17	15942830:15942968:15943754:15943805:15950264:15950349,	15943755	15943805	15943800	15943800	Nonsense_Mutation	G	A	p.Q2230*
BRCA	TCGA-AR-A0TW-01	NCOR1	ENST00000395857.3,ENST00000470782.1,ENST00000395849.2,ENST00000458113.2,ENST00000268712.3	chr17	15961784:15961913:15964714:15965208:15965418:15965584,	15964715	15965208	15965036	15965036	Nonsense_Mutation	T	A	p.R1854*
BRCA	TCGA-A8-A09I-01	NCOR1	ENST00000395851.1,ENST00000458113.2,ENST00000268712.3	chr17	15974722:15974979:15975458:15975542:15976742:15976883,	15975459	15975542	15975531	15975531	Nonsense_Mutation	G	A	p.R1275*
BRCA	TCGA-A2-A0EV-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16022736:16022799:16024365:16024583:16029395:16029520,	16024366	16024583	16024444	16024444	Nonsense_Mutation	C	A	p.E592*
BRCA	TCGA-A2-A0CX-01	NEK10	ENST00000383771.4	chr3	27184935:27184965:27203951:27204092:27204191:27204229,27182972:27183073:27203951:27204092:27204191:27204229,	27203952	27204092	27203970	27203970	Nonsense_Mutation	G	A	p.R998*
BRCA	TCGA-D8-A1JN-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527590	29527590	Nonsense_Mutation	C	T	p.Q347*
BRCA	TCGA-A2-A04Q-01	NF1	ENST00000495910.2,ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29546022:29546136:29548867:29548947:29550461:29550585,	29548868	29548947	29548939	29548939	Nonsense_Mutation	G	A	p.W571*
BRCA	TCGA-AR-A0TU-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057312	30057312	Nonsense_Mutation	C	A	p.S265*
BRCA	TCGA-D8-A1JG-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845639	24845639	Nonsense_Mutation	C	A	p.C795*
BRCA	TCGA-D8-A1JG-01	NFATC4	ENST00000554591.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000554966.1,ENST00000554050.1,ENST00000554473.1,ENST00000553469.1	chr14	24845279:24845307:24845499:24845760:24846843:24846911,	24845500	24845760	24845639	24845639	Nonsense_Mutation	C	A	p.C795*
BRCA	TCGA-C8-A12Q-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128581	46128581	Nonsense_Mutation	C	G	p.S34*
BRCA	TCGA-C8-A12Q-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128581	46128581	Nonsense_Mutation	C	G	p.S34*
BRCA	TCGA-AN-A0FW-01	NFIC	ENST00000590282.1,ENST00000341919.3,ENST00000443272.2	chr19	3359680:3359683:3381709:3382241:3425103:3425145,3366583:3366664:3381709:3382241:3425103:3425145,	3381710	3382241	3381782	3381782	Nonsense_Mutation	C	T	p.Q26*
BRCA	TCGA-E2-A15S-01	NFYB	ENST00000240055.3,ENST00000551727.1,ENST00000550189.1,ENST00000551446.1	chr12	104517165:104517201:104519891:104520022:104522201:104522295,	104519892	104520022	104519903	104519903	Nonsense_Mutation	G	A	p.Q74*
BRCA	TCGA-AO-A0J3-01	NID2	ENST00000556572.1,ENST00000541773.1,ENST00000216286.5	chr14	52481771:52481993:52485778:52486012:52486776:52486896,	52485779	52486012	52485862	52485862	Nonsense_Mutation	C	T	p.W982*
BRCA	TCGA-A8-A06Q-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223742	51223742	Nonsense_Mutation	G	A	p.Q1336*
BRCA	TCGA-EW-A1IZ-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985782	36985782	Nonsense_Mutation	C	T	p.R834*
BRCA	TCGA-E2-A155-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476278	32476278	Nonsense_Mutation	G	A	p.Q219*
BRCA	TCGA-AO-A1KT-01	NLRP2	ENST00000397169.3,ENST00000543010.1,ENST00000433772.2,ENST00000448584.2,ENST00000427260.2,ENST00000540597.1,ENST00000585500.1,ENST00000588619.1	chr19	55485867:55485912:55489119:55489191:55492984:55493007,	55489120	55489191	55489137	55489137	Nonsense_Mutation	C	T	p.R115*
BRCA	TCGA-A2-A0YM-01	NMT2	ENST00000540259.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15151097:15151214:15151700:15151838:15154794:15154962,	15151701	15151838	15151734	15151734	Nonsense_Mutation	G	T	p.Y481*
BRCA	TCGA-E2-A159-01	NPAT	ENST00000530859.1,ENST00000278612.8	chr11	108029519:108029746:108031606:108032741:108032846:108032892,	108031607	108032741	108032049	108032049	Nonsense_Mutation	G	C	p.S1255*
BRCA	TCGA-BH-A0B5-01	NRBP2	ENST00000533846.1,ENST00000530123.1	chr8	144917989:144918045:144918136:144918200:144918296:144918350,144917831:144917900:144918136:144918200:144918296:144918350,	144918137	144918200	144918179	144918179	Nonsense_Mutation	C	A	p.E204*
BRCA	TCGA-BH-A0B5-01	NRBP2	ENST00000531729.1	chr8	144917831:144917900:144917989:144918200:144918296:144918350,	144917990	144918200	144918179	144918179	Nonsense_Mutation	C	A	p.E204*
BRCA	TCGA-A8-A075-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000455749.1,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000374875.1,ENST00000265371.4	chr10	33542955:33543122:33545243:33545399:33552573:33552632,	33545244	33545399	33545247	33545247	Nonsense_Mutation	C	A	p.E271*
BRCA	TCGA-B6-A0I9-01	NSDHL	ENST00000370274.3,ENST00000440023.1	chrX	152034362:152034505:152036114:152036217:152037327:152037907,	152036115	152036217	152036194	152036194	Nonsense_Mutation	C	T	p.R256*
BRCA	TCGA-BH-A209-01	NT5M	ENST00000470418.1,ENST00000483704.1	chr17	17226498:17226559:17248107:17248240:17250118:17250172,	17248108	17248240	17248229	17248229	Nonsense_Mutation	G	A	p.W184*
BRCA	TCGA-C8-A12K-01	NUDCD1	ENST00000239690.4,ENST00000427660.2	chr8	110305572:110305753:110308612:110308798:110334537:110334692,	110308613	110308798	110308645	110308645	Nonsense_Mutation	C	A	p.E143*
BRCA	TCGA-D8-A27P-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726685	71726685	Nonsense_Mutation	G	A	p.Q622*
BRCA	TCGA-BH-A1F8-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228537590:228537758:228538541:228538644:228539021:228539151,	228538542	228538644	228538601	228538601	Nonsense_Mutation	C	T	p.Q6126*
BRCA	TCGA-A1-A0SJ-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000380550.3,ENST00000340096.6	chrX	13775778:13775909:13776455:13776567:13778233:13778326,	13776456	13776567	13776561	13776561	Nonsense_Mutation	C	T	p.Q550*
BRCA	TCGA-AO-A03N-01	OPHN1	ENST00000467444.1,ENST00000355520.5,ENST00000540071.1	chrX	67413731:67413794:67414306:67414340:67417027:67417106,	67414307	67414340	67414316	67414316	Nonsense_Mutation	G	A	p.Q377*
BRCA	TCGA-C8-A12V-01	OPN4	ENST00000372071.2,ENST00000443292.1	chr10	88415911:88416057:88416951:88416984:88417788:88417922,	88416952	88416984	88416983	88416983	Nonsense_Mutation	C	T	p.Q108*
BRCA	TCGA-BH-A0HA-01	OSBPL1A	ENST00000319481.3,ENST00000399443.3,ENST00000357041.4	chr18	21758125:21758159:21759701:21759799:21761108:21761243,	21759702	21759799	21759703	21759703	Nonsense_Mutation	G	A	p.R637*
BRCA	TCGA-A8-A081-01	OSBPL9	ENST00000447887.1,ENST00000495776.1,ENST00000531061.1,ENST00000528603.1,ENST00000475697.1,ENST00000435274.2,ENST00000462759.1,ENST00000530544.1,ENST00000486942.1,ENST00000453295.1,ENST00000371714.1,ENST00000435686.2,ENST00000531828.1,ENST00000371710.3,ENST00000526917.1,ENST00000532975.1,ENST00000428468.1,ENST00000337809.4,ENST00000361556.5	chr1	52226377:52226452:52227538:52227643:52231493:52231528,	52227539	52227643	52227565	52227565	Nonsense_Mutation	C	T	p.Q244*
BRCA	TCGA-BH-A18P-01	PARP2	ENST00000250416.5,ENST00000539930.1,ENST00000530598.2,ENST00000527915.1,ENST00000429687.3	chr14	20824465:20824593:20824748:20824848:20825209:20825308,	20824749	20824848	20824784	20824784	Nonsense_Mutation	G	A	p.W435*
BRCA	TCGA-E9-A1N9-01	PARP8	ENST00000503561.3	chr5	50129812:50129882:50130675:50130849:50137799:50137902,	50130676	50130849	50130705	50130705	Nonsense_Mutation	G	T	p.E514*
BRCA	TCGA-AR-A0U1-01	PARP8	ENST00000503561.3,ENST00000503707.2	chr5	50045984:50046022:50055476:50055566:50057654:50057721,	50055477	50055566	50055554	50055554	Nonsense_Mutation	A	T	p.R88*
BRCA	TCGA-AN-A0FK-01	PAX8	ENST00000348715.5,ENST00000263334.5	chr2	113984731:113984833:113992970:113993080:113994177:113994269,	113992971	113993080	113993061	113993061	Nonsense_Mutation	G	A	p.Q333*
BRCA	TCGA-AN-A0FK-01	PAX8	ENST00000497038.2,ENST00000485840.1,ENST00000429538.3	chr2	113984731:113984833:113992970:113993159:113994177:113994269,	113992971	113993159	113993061	113993061	Nonsense_Mutation	G	A	p.Q333*
BRCA	TCGA-A7-A26J-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141244045	141244045	Nonsense_Mutation	G	T	p.Y617*
BRCA	TCGA-AR-A0TV-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243846	141243846	Nonsense_Mutation	G	A	p.Q684*
BRCA	TCGA-BH-A0W4-01	PCDH15	ENST00000463095.1,ENST00000320301.6,ENST00000448885.1,ENST00000437009.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55616934:55617023:55626401:55626617:55663002:55663130,	55626402	55626617	55626527	55626527	Nonsense_Mutation	C	A	p.E1203*
BRCA	TCGA-E2-A10B-01	PCDH7	ENST00000543491.1	chr4	30726062:30726218:30921774:30921991:31144094:31144353,	30921775	30921991	30921826	30921826	Nonsense_Mutation	C	T	p.Q1029*
BRCA	TCGA-E2-A10B-01	PCDH7	ENST00000511884.2	chr4	30726062:30726218:30921774:30921967:31144094:31144353,	30921775	30921967	30921826	30921826	Nonsense_Mutation	C	T	p.Q1029*
BRCA	TCGA-C8-A27B-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579907	82579907	Nonsense_Mutation	C	A	p.E3333*
BRCA	TCGA-AO-A0JD-01	PCM1	ENST00000519253.1,ENST00000522275.1,ENST00000327578.8,ENST00000325083.8,ENST00000519802.1	chr8	17871496:17871545:17872092:17872349:17882869:17882962,	17872093	17872349	17872349	17872349	Nonsense_Mutation	T	G	p.Y1947*
BRCA	TCGA-E9-A244-01	PCSK6	ENST00000560902.1	chr15	101906400:101906537:101910539:101910728:101922296:101922329,101872056:101872236:101910539:101910728:101922296:101922329,	101910540	101910728	101910615	101910615	Nonsense_Mutation	G	T	p.S548*
BRCA	TCGA-C8-A1HL-01	PELI3	ENST00000320740.7,ENST00000527230.1,ENST00000524466.1	chr11	66235598:66235751:66236303:66236375:66238712:66238833,	66236304	66236375	66236347	66236347	Nonsense_Mutation	G	T	p.E66*
BRCA	TCGA-BH-A0BA-01	PHF12	ENST00000582436.1,ENST00000577226.1,ENST00000332830.4	chr17	27237243:27237387:27238129:27238255:27239499:27239804,	27238130	27238255	27238154	27238154	Nonsense_Mutation	G	A	p.R731*
BRCA	TCGA-BH-A0BA-01	PHF12	ENST00000579036.2	chr17	27237243:27237387:27238129:27238192:27239499:27240112,	27238130	27238192	27238154	27238154	Nonsense_Mutation	G	A	p.R731*
BRCA	TCGA-BH-A209-01	PIP5K1A	ENST00000368888.4,ENST00000349792.5,ENST00000409426.1,ENST00000368890.4,ENST00000489625.1,ENST00000441902.2	chr1	151214913:151215043:151219395:151219441:151220338:151220364,	151219396	151219441	151219428	151219428	Nonsense_Mutation	C	T	p.Q167*
BRCA	TCGA-D8-A1X9-01	PITPNC1	ENST00000581923.1	chr17	65529020:65529066:65548372:65548461:65574301:65574341,	65548373	65548461	65548392	65548392	Nonsense_Mutation	A	T	p.R73*
BRCA	TCGA-BH-A0BQ-01	PKNOX2	ENST00000298282.9,ENST00000558705.1	chr11	125221179:125221288:125237741:125237881:125255446:125255514,	125237742	125237881	125237868	125237868	Nonsense_Mutation	C	T	p.R72*
BRCA	TCGA-AN-A0FY-01	PLCG1	ENST00000373271.1,ENST00000609257.1,ENST00000607954.1	chr20	39802562:39802651:39802766:39802951:39803106:39803179,	39802767	39802951	39802848	39802848	Nonsense_Mutation	C	T	p.R1244*
BRCA	TCGA-AN-A0FY-01	PLCG1	ENST00000609821.1,ENST00000244007.3,ENST00000373272.2	chr20	39802562:39802651:39802763:39802951:39803106:39803179,	39802764	39802951	39802848	39802848	Nonsense_Mutation	C	T	p.R1244*
BRCA	TCGA-A2-A1FX-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000334686.6,ENST00000494598.1	chr3	155222343:155222415:155232511:155232673:155241685:155241793,	155232512	155232673	155232586	155232586	Nonsense_Mutation	C	A	p.E508*
BRCA	TCGA-AN-A0FT-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208841408	208841408	Nonsense_Mutation	G	A	p.R505*
BRCA	TCGA-AN-A0XN-01	PLOD2	ENST00000360060.3,ENST00000282903.5	chr3	145838898:145839035:145841924:145842016:145878667:145878778,	145841925	145842016	145841966	145841966	Nonsense_Mutation	G	A	p.R54*
BRCA	TCGA-E9-A1ND-01	PMS1	ENST00000424307.1,ENST00000441310.2,ENST00000447232.2	chr2	190670377:190670480:190682742:190682906:190708689:190708806,	190682743	190682906	190682787	190682787	Nonsense_Mutation	A	T	p.R155*
BRCA	TCGA-C8-A12K-01	PNPO	ENST00000225573.4,ENST00000544840.1,ENST00000534893.1,ENST00000582171.1	chr17	46023226:46023355:46023688:46023759:46023979:46024115,	46023689	46023759	46023746	46023746	Nonsense_Mutation	A	T	p.K202*
BRCA	TCGA-BH-A0BW-01	POLR1C	ENST00000481352.2,ENST00000488601.2,ENST00000428025.2,ENST00000423780.1,ENST00000372389.3,ENST00000455605.2,ENST00000304004.3,ENST00000372344.2	chr6	43485043:43485115:43487070:43487178:43487443:43487576,	43487071	43487178	43487161	43487161	Nonsense_Mutation	C	T	p.R78*
BRCA	TCGA-BH-A0B8-01	POP5	ENST00000357500.4	chr12	121017576:121017726:121018917:121019060:121019145:121019182,	121018918	121019060	121018957	121018957	Nonsense_Mutation	C	A	p.G42*
BRCA	TCGA-BH-A0B8-01	POP5	ENST00000543355.1	chr12	121017576:121017726:121018798:121019060:121019145:121019182,	121018799	121019060	121018957	121018957	Nonsense_Mutation	C	A	p.G42*
BRCA	TCGA-A8-A07P-01	PPEF1	ENST00000543630.1,ENST00000544635.1,ENST00000349874.5,ENST00000379962.3,ENST00000472826.1,ENST00000361511.4	chrX	18751865:18751926:18767909:18768070:18775744:18775859,	18767910	18768070	18768068	18768068	Nonsense_Mutation	C	T	p.Q132*
BRCA	TCGA-EW-A1PB-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428733	44428733	Nonsense_Mutation	C	G	p.S132*
BRCA	TCGA-AR-A1AV-01	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82125820	82125820	Nonsense_Mutation	C	A	p.E128*
BRCA	TCGA-AN-A0XW-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48080771	48080771	Nonsense_Mutation	C	G	p.S286*
BRCA	TCGA-D8-A1JG-01	PRPF40A	ENST00000410080.1	chr2	153520651:153520766:153525650:153525784:153526744:153526895,	153525651	153525784	153525674	153525674	Nonsense_Mutation	G	A	p.R581*
BRCA	TCGA-AO-A125-01	PRPSAP2	ENST00000542013.1,ENST00000395656.2,ENST00000432893.2,ENST00000268835.2,ENST00000412418.1,ENST00000419071.2,ENST00000422237.1,ENST00000487101.1,ENST00000536323.1,ENST00000414602.1,ENST00000492129.1	chr17	18781010:18781183:18785880:18785996:18793134:18793190,	18785881	18785996	18785979	18785979	Nonsense_Mutation	C	T	p.Q171*
BRCA	TCGA-AO-A03L-01	PRRX1	ENST00000239461.6	chr1	170688866:170689042:170695360:170695542:170705188:170705374,	170695361	170695542	170695522	170695522	Nonsense_Mutation	G	A	p.W193*
BRCA	TCGA-A8-A07P-01	PSMD5	ENST00000210313.3	chr9	123591376:123591486:123593608:123593737:123594109:123594223,	123593609	123593737	123593626	123593626	Nonsense_Mutation	G	A	p.R182*
BRCA	TCGA-B6-A0WW-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717771	89717771	Nonsense_Mutation	A	T	p.K266*
BRCA	TCGA-E2-A14T-01	PTMS	ENST00000389462.4,ENST00000538057.1	chr12	6878768:6878840:6879009:6879165:6879322:6879384,	6879010	6879165	6879111	6879111	Nonsense_Mutation	G	T	p.E48*
BRCA	TCGA-E2-A14T-01	PTMS	ENST00000540828.2,ENST00000540667.1,ENST00000309083.6	chr12	6878768:6878840:6879086:6879165:6879322:6879384,	6879087	6879165	6879111	6879111	Nonsense_Mutation	G	T	p.E48*
BRCA	TCGA-A8-A093-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87718026:87718082:87720253:87720357:87724861:87725010,	87720254	87720357	87720273	87720273	Nonsense_Mutation	G	T	p.E2146*
BRCA	TCGA-AR-A24Z-01	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70938336:70938443:70946556:70946800:70948939:70949089,	70946557	70946800	70946687	70946687	Nonsense_Mutation	C	A	p.E1753*
BRCA	TCGA-E2-A15A-01	PTPRD	ENST00000381196.4,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000540109.1	chr9	8499646:8499840:8500753:8501059:8504260:8504405,	8500754	8501059	8500901	8500901	Nonsense_Mutation	C	A	p.E661*
BRCA	TCGA-E2-A15A-06	PTPRD	ENST00000381196.4,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000540109.1	chr9	8499646:8499840:8500753:8501059:8504260:8504405,	8500754	8501059	8500901	8500901	Nonsense_Mutation	C	A	p.E661*
BRCA	TCGA-E9-A1NG-01	PTPRF	ENST00000372413.3,ENST00000372414.3,ENST00000438120.1,ENST00000429895.1,ENST00000359947.4	chr1	44058133:44058272:44063418:44063724:44064390:44064584,	44063419	44063724	44063714	44063714	Nonsense_Mutation	C	T	p.R219*
BRCA	TCGA-BH-A0HP-01	PTPRH	ENST00000376350.3,ENST00000588559.1	chr19	55713423:55713690:55715149:55715416:55716693:55716960,	55715150	55715416	55715306	55715306	Nonsense_Mutation	G	A	p.Q244*
BRCA	TCGA-A2-A0YK-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128404859:128404969:128410834:128411137:128505576:128505870,	128410835	128411137	128410949	128410949	Nonsense_Mutation	G	A	p.Q451*
BRCA	TCGA-C8-A12M-01	PTPRQ	ENST00000266688.5	chr12	80933554:80933723:80935333:80935624:80935867:80936143,	80935334	80935624	80935456	80935456	Nonsense_Mutation	C	T	p.Q1093*
BRCA	TCGA-E9-A247-01	RAB18	ENST00000535776.1,ENST00000465772.1	chr10	27793322:27793366:27798803:27798859:27815756:27815818,	27798804	27798859	27798830	27798830	Nonsense_Mutation	C	G	p.Y115*
BRCA	TCGA-BH-A0E0-01	RABGAP1	ENST00000373647.4,ENST00000459903.1,ENST00000317419.7	chr9	125719427:125719488:125746763:125746998:125748493:125748695,	125746764	125746998	125746848	125746848	Nonsense_Mutation	G	T	p.E79*
BRCA	TCGA-AR-A256-01	RAD23A	ENST00000316856.3,ENST00000588329.1,ENST00000588826.2,ENST00000592268.1,ENST00000586534.1	chr19	13059153:13059172:13059310:13059366:13059499:13059627,	13059311	13059366	13059325	13059325	Nonsense_Mutation	C	G	p.S144*
BRCA	TCGA-A2-A04N-01	RAD9A	ENST00000529100.1,ENST00000530934.1,ENST00000544620.1,ENST00000307980.2,ENST00000543808.1	chr11	67161008:67161081:67161161:67161261:67163186:67163278,	67161162	67161261	67161199	67161199	Nonsense_Mutation	T	A	p.C129*
BRCA	TCGA-A2-A04N-01	RAD9A	ENST00000542139.1	chr11	67161008:67161081:67161193:67161261:67163186:67163278,	67161194	67161261	67161199	67161199	Nonsense_Mutation	T	A	p.C129*
BRCA	TCGA-BH-A0HL-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697697	17697697	Nonsense_Mutation	C	T	p.Q479*
BRCA	TCGA-AR-A0TX-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380099	109380099	Nonsense_Mutation	C	G	p.S1035*
BRCA	TCGA-AN-A0FL-01	RANBP3L	ENST00000502994.1,ENST00000296604.3,ENST00000515759.1	chr5	36260881:36260966:36262040:36262144:36265060:36265200,	36262041	36262144	36262047	36262047	Nonsense_Mutation	G	C	p.S193*
BRCA	TCGA-A2-A0CS-01	RAPGEF3	ENST00000171000.4,ENST00000548919.1,ENST00000479866.1,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000395358.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2,ENST00000494764.1	chr12	48140642:48140682:48141326:48141409:48141494:48141645,	48141327	48141409	48141337	48141337	Nonsense_Mutation	G	A	p.R516*
BRCA	TCGA-A7-A13D-01	RARG	ENST00000338561.5	chr12	53609076:53609218:53609429:53609578:53624952:53625016,53609076:53609218:53609429:53609578:53621145:53621334,53609076:53609218:53609429:53609578:53613733:53613868,	53609430	53609578	53609502	53609502	Nonsense_Mutation	G	C	p.Y87*
BRCA	TCGA-EW-A1PE-01	RASIP1	ENST00000222145.4	chr19	49227593:49227766:49227973:49228217:49230041:49230145,	49227974	49228217	49227977	49227977	Nonsense_Mutation	G	A	p.R790*
BRCA	TCGA-E9-A1RC-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953760	48953760	Nonsense_Mutation	C	T	p.R455*
BRCA	TCGA-A1-A0SI-01	RBM41	ENST00000203616.8,ENST00000495517.1	chrX	106313419:106313655:106331964:106332069:106356626:106356698,	106331965	106332069	106332067	106332067	Nonsense_Mutation	C	A	p.E176*
BRCA	TCGA-A1-A0SI-01	RBM41	ENST00000372487.1,ENST00000372479.3	chrX	106312539:106312632:106331665:106332069:106358581:106358684,	106331666	106332069	106332067	106332067	Nonsense_Mutation	C	A	p.E176*
BRCA	TCGA-D8-A1XZ-01	RCAN3	ENST00000412742.2	chr1	24841020:24841057:24857707:24857881:24859572:24859744,24840862:24841057:24857707:24857881:24861582:24861769,	24857708	24857881	24857756	24857756	Nonsense_Mutation	C	T	p.Q82*
BRCA	TCGA-AN-A0XW-01	RDH11	ENST00000557726.1,ENST00000553384.1,ENST00000381346.4	chr14	68151731:68151921:68156928:68157138:68157856:68157925,	68156929	68157138	68156953	68156953	Nonsense_Mutation	G	A	p.Q214*
BRCA	TCGA-C8-A1HE-01	RECK	ENST00000475774.1,ENST00000479053.1,ENST00000377966.3	chr9	36060115:36060152:36063791:36063877:36065573:36065621,	36063792	36063877	36063860	36063860	Nonsense_Mutation	C	T	p.R114*
BRCA	TCGA-AR-A1AY-01	REG1B	ENST00000454188.1	chr2	79312156:79312409:79312531:79312729:79313492:79313630,	79312532	79312729	79312688	79312688	Nonsense_Mutation	G	T	p.Y121*
BRCA	TCGA-AR-A1AY-01	REG1B	ENST00000305089.3	chr2	79312156:79312409:79312617:79312729:79313492:79313630,	79312618	79312729	79312688	79312688	Nonsense_Mutation	G	T	p.Y121*
BRCA	TCGA-A8-A07C-01	RETSAT	ENST00000449375.1,ENST00000295802.4,ENST00000457495.2	chr2	85570233:85570504:85570761:85570921:85571361:85571451,85570233:85570504:85570761:85570921:85571121:85571288,	85570762	85570921	85570864	85570864	Nonsense_Mutation	G	A	p.R531*
BRCA	TCGA-AR-A0U3-01	RFXANK	ENST00000545522.2,ENST00000303088.4,ENST00000540981.1,ENST00000407360.3,ENST00000456252.3,ENST00000421262.3	chr19	19303778:19303909:19304747:19304942:19307774:19307855,19303778:19303909:19304747:19304942:19307771:19307834,	19304748	19304942	19304795	19304795	Nonsense_Mutation	C	T	p.Q14*
BRCA	TCGA-A2-A0CX-01	RGL3	ENST00000563726.1	chr19	11517499:11517540:11526612:11526824:11527287:11527336,11521928:11522120:11526612:11526824:11527287:11527336,	11526613	11526824	11526649	11526649	Nonsense_Mutation	G	A	p.R201*
BRCA	TCGA-A2-A0CX-01	RGL3	ENST00000562663.1	chr19	11517499:11517540:11526622:11526824:11527287:11527336,	11526623	11526824	11526649	11526649	Nonsense_Mutation	G	A	p.R201*
BRCA	TCGA-AO-A0J4-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075866	101075866	Nonsense_Mutation	G	C	p.S377*
BRCA	TCGA-BH-A18V-01	RGS3	ENST00000317613.6	chr9	116226011:116226161:116241770:116241821:116245338:116245397,	116241771	116241821	116241773	116241773	Nonsense_Mutation	C	T	p.Q140*
BRCA	TCGA-A1-A0SH-01	RHCG	ENST00000558360.1	chr15	90014987:90015086:90015941:90016094:90019985:90020059,90014675:90014953:90015941:90016094:90019985:90020059,	90015942	90016094	90016021	90016021	Nonsense_Mutation	G	T	p.S462*
BRCA	TCGA-A1-A0SH-01	RHCG	ENST00000560081.1	chr15	90014987:90015086:90015952:90016094:90019985:90020059,	90015953	90016094	90016021	90016021	Nonsense_Mutation	G	T	p.S462*
BRCA	TCGA-A1-A0SI-01	RINT1	ENST00000257700.2,ENST00000497979.1	chr7	105204179:105204394:105205723:105205904:105205976:105206095,	105205724	105205904	105205803	105205803	Nonsense_Mutation	C	T	p.R656*
BRCA	TCGA-C8-A133-01	RMND1	ENST00000444024.1,ENST00000367303.4,ENST00000336451.3	chr6	151742379:151742456:151743675:151743740:151744659:151744766,	151743676	151743740	151743699	151743699	Nonsense_Mutation	C	A	p.E327*
BRCA	TCGA-E9-A1R5-01	RNF41	ENST00000552244.1	chr12	56604084:56604352:56607741:56607854:56615543:56615627,	56607742	56607854	56607765	56607765	Nonsense_Mutation	C	A	p.G23*
BRCA	TCGA-AQ-A04L-01	RNLS	ENST00000371947.3,ENST00000331772.4,ENST00000437752.1	chr10	90074269:90074398:90122308:90122482:90332659:90332818,	90122309	90122482	90122432	90122432	Nonsense_Mutation	G	A	p.R193*
BRCA	TCGA-B6-A0IN-01	ROCK1	ENST00000399799.2	chr18	18572791:18572898:18586311:18586558:18586659:18586751,	18586312	18586558	18586384	18586384	Nonsense_Mutation	G	A	p.Q605*
BRCA	TCGA-BH-A18P-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000568413.1,ENST00000561603.1	chr15	41820432:41820534:41821667:41821766:41822061:41822177,	41821668	41821766	41821754	41821754	Nonsense_Mutation	G	A	p.R358*
BRCA	TCGA-A8-A095-01	RPH3AL	ENST00000323434.8,ENST00000536489.2	chr17	69487:69527:96901:97076:131558:131645,69487:69527:96901:97076:169210:169271,	96902	97076	96983	96983	Nonsense_Mutation	G	A	p.R178*
BRCA	TCGA-EW-A1IZ-01	RPS6KA3	ENST00000379548.4,ENST00000438357.1,ENST00000540702.1,ENST00000457145.1,ENST00000544447.1,ENST00000379565.3,ENST00000492128.1	chrX	20212309:20212386:20213182:20213263:20222139:20222221,	20213183	20213263	20213261	20213261	Nonsense_Mutation	G	A	p.R110*
BRCA	TCGA-A8-A09G-01	RRP15	ENST00000366932.3	chr1	218478369:218478467:218480772:218480974:218504289:218511325,	218480773	218480974	218480877	218480877	Nonsense_Mutation	C	G	p.S203*
BRCA	TCGA-AR-A0TX-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63486546	63486546	Nonsense_Mutation	C	A	p.S172*
BRCA	TCGA-AR-A0TX-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63486546	63486546	Nonsense_Mutation	C	A	p.S172*
BRCA	TCGA-B6-A0IH-01	RUNX1	ENST00000358356.5	chr21	36171597:36171759:36206706:36206898:36231770:36231875,36193575:36193993:36206706:36206898:36231770:36231875,	36206707	36206898	36206716	36206716	Nonsense_Mutation	G	A	p.Q266*
BRCA	TCGA-EW-A1IZ-01	SAE1	ENST00000270225.7,ENST00000414294.2,ENST00000413379.3,ENST00000594144.1,ENST00000596995.1,ENST00000392776.3,ENST00000597808.1,ENST00000600706.1,ENST00000594526.1	chr19	47646750:47646862:47653458:47653632:47656154:47656257,	47653459	47653632	47653513	47653513	Nonsense_Mutation	C	T	p.R89*
BRCA	TCGA-AO-A1KR-01	SCNN1B	ENST00000343070.2	chr16	23313590:23313758:23359912:23360231:23364121:23364234,	23359913	23360231	23360076	23360076	Nonsense_Mutation	G	A	p.W52*
BRCA	TCGA-BH-A0E7-01	SCYL1	ENST00000533862.1	chr11	65304507:65304599:65305279:65305351:65305474:65305653,	65305280	65305351	65305349	65305349	Nonsense_Mutation	C	T	p.Q677*
BRCA	TCGA-A8-A06Y-01	SCYL2	ENST00000360820.2	chr12	100661026:100661174:100676720:100676925:100685280:100685438,100661161:100661570:100676720:100676925:100685280:100685438,	100676721	100676925	100676854	100676854	Nonsense_Mutation	C	T	p.R36*
BRCA	TCGA-AR-A1AK-01	SEC24C	ENST00000411652.2,ENST00000339365.2,ENST00000535742.1,ENST00000345254.4,ENST00000540668.1	chr10	75529593:75529773:75530037:75530229:75530466:75530556,	75530038	75530229	75530080	75530080	Nonsense_Mutation	C	T	p.R969*
BRCA	TCGA-BH-A1EY-01	SEL1L2	ENST00000284951.5,ENST00000423870.2	chr20	13845812:13845887:13845994:13846160:13847347:13847496,	13845995	13846160	13846124	13846124	Nonsense_Mutation	C	A	p.E481*
BRCA	TCGA-A2-A04P-01	SEMA4D	ENST00000420987.1,ENST00000450295.1,ENST00000455551.2,ENST00000356444.2,ENST00000429836.1,ENST00000438547.2,ENST00000339861.4,ENST00000420681.2,ENST00000422704.2,ENST00000343780.4,ENST00000537934.1	chr9	92014190:92014253:92017785:92017931:92020265:92020614,	92017786	92017931	92017794	92017794	Nonsense_Mutation	G	A	p.Q82*
BRCA	TCGA-C8-A26Z-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412369	76412369	Nonsense_Mutation	G	A	p.W766*
BRCA	TCGA-A8-A08L-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4	chr14	94847207:94847478:94848928:94849578:94854896:94854926,	94848929	94849578	94849023	94849023	Nonsense_Mutation	G	C	p.Y184*
BRCA	TCGA-AN-A0XW-01	SERPINA11	ENST00000334708.3	chr14	94909414:94909562:94912667:94912941:94914468:94914597,	94912668	94912941	94912879	94912879	Nonsense_Mutation	C	A	p.E236*
BRCA	TCGA-A8-A075-01	SF3B1	ENST00000335508.6	chr2	198273092:198273305:198274493:198274731:198281464:198281635,	198274494	198274731	198274677	198274677	Nonsense_Mutation	C	A	p.G241*
BRCA	TCGA-D8-A146-01	SFXN4	ENST00000369131.4,ENST00000330036.6,ENST00000461438.1,ENST00000355697.2,ENST00000466218.1	chr10	120916189:120916268:120917179:120917245:120917382:120917439,	120917180	120917245	120917220	120917220	Nonsense_Mutation	A	C	p.L166*
BRCA	TCGA-BH-A1F0-01	SGK1	ENST00000525877.1,ENST00000528577.1,ENST00000477460.2,ENST00000367858.5,ENST00000367857.5,ENST00000367855.3,ENST00000237305.7,ENST00000413996.3,ENST00000475719.2,ENST00000489458.2	chr6	134492788:134492870:134493330:134493454:134493799:134493877,	134493331	134493454	134493422	134493422	Nonsense_Mutation	G	T	p.S327*
BRCA	TCGA-AN-A0FZ-01	SGPL1	ENST00000373202.3	chr10	72576566:72576636:72604229:72604395:72610899:72610967,	72604230	72604395	72604349	72604349	Nonsense_Mutation	G	A	p.W49*
BRCA	TCGA-C8-A27B-01	SH3GL3	ENST00000427482.2,ENST00000324537.5,ENST00000563901.1,ENST00000535412.1,ENST00000434347.1	chr15	84237287:84237424:84241316:84241450:84245334:84245493,	84241317	84241450	84241415	84241415	Nonsense_Mutation	C	T	p.Q144*
BRCA	TCGA-BH-A208-01	SHISA4	ENST00000464117.1,ENST00000362011.6	chr1	201858690:201858744:201859581:201859715:201860528:201860696,	201859582	201859715	201859608	201859608	Nonsense_Mutation	C	G	p.S91*
BRCA	TCGA-AN-A0XW-01	SIK3	ENST00000375300.1,ENST00000434315.2,ENST00000465421.1,ENST00000415541.1,ENST00000542607.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116731989:116732099:116732556:116732642:116732917:116733043,	116732557	116732642	116732606	116732606	Nonsense_Mutation	G	A	p.Q650*
BRCA	TCGA-A2-A0YT-01	SLAMF7	ENST00000368043.3,ENST00000359331.4,ENST00000495334.1	chr1	160709093:160709146:160717983:160718304:160721975:160722036,160709093:160709146:160717983:160718304:160719610:160719883,	160717984	160718304	160718252	160718252	Nonsense_Mutation	C	A	p.Y108*
BRCA	TCGA-E9-A245-01	SLBP	ENST00000429429.2,ENST00000483348.1,ENST00000488267.1,ENST00000489418.1,ENST00000318386.4	chr4	1696500:1696567:1697928:1698078:1701290:1701428,	1697929	1698078	1698071	1698071	Nonsense_Mutation	G	A	p.R163*
BRCA	TCGA-B6-A0IN-01	SLC20A2	ENST00000518660.1,ENST00000520179.1,ENST00000342228.3,ENST00000520262.1	chr8	42294992:42295095:42296967:42297171:42302163:42302280,	42296968	42297171	42297142	42297142	Nonsense_Mutation	G	A	p.R254*
BRCA	TCGA-BH-A0HY-01	SLC4A1AP	ENST00000326019.6	chr2	27907903:27908144:27910800:27910887:27911566:27911634,	27910801	27910887	27910885	27910885	Nonsense_Mutation	C	A	p.S734*
BRCA	TCGA-A8-A09I-01	SMYD3	ENST00000541742.1,ENST00000490107.1,ENST00000453676.1,ENST00000388985.4	chr1	246093199:246093239:246490502:246490639:246493781:246493839,	246490503	246490639	246490556	246490556	Nonsense_Mutation	G	A	p.Q101*
BRCA	TCGA-C8-A273-01	SNUPN	ENST00000569817.1,ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75899556:75899654:75901898:75901992:75902230:75902335,	75901899	75901992	75901960	75901960	Nonsense_Mutation	G	T	p.Y147*
BRCA	TCGA-AQ-A04J-01	SOBP	ENST00000317357.5	chr6	107854662:107854814:107908283:107908379:107954717:107956673,	107908284	107908379	107908293	107908293	Nonsense_Mutation	G	T	p.E195*
BRCA	TCGA-A8-A092-01	SORBS1	ENST00000361941.3,ENST00000371247.2	chr10	97082502:97082562:97096277:97097051:97098889:97099084,97081719:97081778:97096277:97097051:97098889:97099084,	97096278	97097051	97096417	97096417	Nonsense_Mutation	G	C	p.S1167*
BRCA	TCGA-A8-A092-01	SORBS1	ENST00000371246.2,ENST00000277982.5	chr10	97081719:97081778:97096277:97096562:97098889:97099084,	97096278	97096562	97096417	97096417	Nonsense_Mutation	G	C	p.S1167*
BRCA	TCGA-D8-A146-01	SOX30	ENST00000265007.6,ENST00000519442.1	chr5	157065237:157065730:157073644:157073824:157075664:157075904,	157073645	157073824	157073789	157073789	Nonsense_Mutation	G	A	p.R415*
BRCA	TCGA-BH-A1FR-01	SPAG11A	ENST00000326558.5	chr8	7706212:7706365:7718167:7718245:7721022:7721319,	7718168	7718245	7718209	7718209	Nonsense_Mutation	C	T	p.Q86*
BRCA	TCGA-D8-A1JL-01	SPTBN1	ENST00000333896.5,ENST00000356805.4	chr2	54864849:54864940:54870119:54870266:54871459:54871723,	54870120	54870266	54870174	54870174	Nonsense_Mutation	G	T	p.E1305*
BRCA	TCGA-A8-A09G-01	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66466876:66467079:66467996:66468753:66469054:66469192,	66467997	66468753	66468703	66468703	Nonsense_Mutation	G	C	p.S956*
BRCA	TCGA-E9-A1RF-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30744922:30745119:30745214:30745329:30745816:30745936,	30745215	30745329	30745237	30745237	Nonsense_Mutation	G	T	p.E2173*
BRCA	TCGA-EW-A1OV-01	SRL	ENST00000399609.3,ENST00000537996.1,ENST00000572111.1	chr16	4245553:4245787:4247799:4247916:4253166:4253262,	4247800	4247916	4247812	4247812	Nonsense_Mutation	G	A	p.Q122*
BRCA	TCGA-A1-A0SO-01	SSC5D	ENST00000389623.6	chr19	56012400:56012568:56024377:56024539:56028590:56030465,	56024378	56024539	56024423	56024423	Nonsense_Mutation	C	A	p.S944*
BRCA	TCGA-E2-A10F-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136085784:136085924:136087949:136088124:136096501:136096594,	136087950	136088124	136088052	136088052	Nonsense_Mutation	G	A	p.Q815*
BRCA	TCGA-AR-A0TX-01	STK17B	ENST00000263955.4,ENST00000409228.1	chr2	197008283:197008410:197010634:197010779:197021162:197021375,	197010635	197010779	197010664	197010664	Nonsense_Mutation	G	A	p.Q151*
BRCA	TCGA-BH-A18V-01	STMN4	ENST00000523048.1,ENST00000350889.4,ENST00000522908.1	chr8	27098684:27098779:27099193:27099274:27099626:27100009,27098684:27098779:27099193:27099274:27099913:27100009,	27099194	27099274	27099197	27099197	Nonsense_Mutation	G	A	p.Q63*
BRCA	TCGA-A7-A0CE-01	STRN4	ENST00000597021.2,ENST00000597063.2,ENST00000263280.6,ENST00000600358.3,ENST00000435164.2,ENST00000596012.2,ENST00000391910.3,ENST00000593979.2,ENST00000539396.1	chr19	47236456:47236493:47240079:47240158:47241420:47241429,	47240080	47240158	47240084	47240084	Nonsense_Mutation	G	A	p.R179*
BRCA	TCGA-BH-A208-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70541738:70541914:70550736:70550879:70550969:70551093,	70550737	70550879	70550877	70550877	Nonsense_Mutation	C	T	p.Q809*
BRCA	TCGA-D8-A1J9-01	SUMO1	ENST00000409627.2,ENST00000392246.2,ENST00000409498.2,ENST00000469034.1,ENST00000409368.1,ENST00000392245.1	chr2	203075457:203075529:203079079:203079157:203084754:203084829,	203079080	203079157	203079096	203079096	Nonsense_Mutation	G	T	p.S50*
BRCA	TCGA-D8-A1J9-01	SUMO1	ENST00000409205.1	chr2	203075457:203075529:203079079:203079152:203084754:203084829,	203079080	203079152	203079096	203079096	Nonsense_Mutation	G	T	p.S50*
BRCA	TCGA-AN-A0FS-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113169977	113169977	Nonsense_Mutation	C	A	p.E2635*
BRCA	TCGA-EW-A1J5-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58468578:58468648:58470491:58470652:58471483:58471583,	58470492	58470652	58470578	58470578	Nonsense_Mutation	G	A	p.Q527*
BRCA	TCGA-BH-A0BZ-01	SYMPK	ENST00000593504.1,ENST00000598896.1,ENST00000600237.1,ENST00000245934.7,ENST00000593899.1,ENST00000599814.1,ENST00000599460.1	chr19	46338353:46338486:46341718:46341873:46345507:46345747,	46341719	46341873	46341763	46341763	Nonsense_Mutation	C	A	p.E400*
BRCA	TCGA-B6-A0RG-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99671359	99671359	Nonsense_Mutation	G	T	p.E931*
BRCA	TCGA-AC-A23C-01	TACC3	ENST00000313288.4	chr4	1741685:1741729:1742552:1742713:1746244:1746351,	1742553	1742713	1742588	1742588	Nonsense_Mutation	G	T	p.E700*
BRCA	TCGA-AR-A250-01	TBC1D1	ENST00000446803.2,ENST00000261439.4,ENST00000508802.1,ENST00000491553.1	chr4	38016503:38016594:38019974:38020064:38022211:38022316,	38019975	38020064	38020062	38020062	Nonsense_Mutation	C	T	p.Q324*
BRCA	TCGA-BH-A0HY-01	TBC1D5	ENST00000429383.4,ENST00000446818.2,ENST00000253692.7,ENST00000429924.2	chr3	17413566:17413739:17415962:17416032:17416120:17416171,	17415963	17416032	17415993	17415993	Nonsense_Mutation	C	T	p.W264*
BRCA	TCGA-A1-A0SM-01	TBC1D8	ENST00000376840.4,ENST00000409318.1	chr2	101645952:101646238:101648729:101648847:101650005:101650220,	101648730	101648847	101648789	101648789	Nonsense_Mutation	C	T	p.W611*
BRCA	TCGA-C8-A12P-01	TBL1X	ENST00000441088.1,ENST00000407597.2,ENST00000536365.1,ENST00000217964.7,ENST00000452824.1	chrX	9608312:9608400:9621584:9621729:9622254:9622328,	9621585	9621729	9621720	9621720	Nonsense_Mutation	C	T	p.R32*
BRCA	TCGA-AN-A0AT-01	TBRG1	ENST00000529543.1	chr11	124492889:124493129:124494826:124494897:124495566:124495799,124492889:124493129:124494826:124494897:124496799:124496831,	124494827	124494897	124494848	124494848	Nonsense_Mutation	G	T	p.E58*
BRCA	TCGA-B6-A0RS-01	TDRD12	ENST00000421545.2	chr19	33210978:33211002:33222630:33222789:33229761:33229898,	33222631	33222789	33222735	33222735	Nonsense_Mutation	C	A	p.Y43*
BRCA	TCGA-E2-A152-01	TEAD1	ENST00000527575.1,ENST00000361905.4,ENST00000334310.6,ENST00000527636.1	chr11	12697049:12697108:12785725:12785981:12883796:12883861,	12785726	12785981	12785961	12785961	Nonsense_Mutation	C	G	p.S46*
BRCA	TCGA-D8-A1XF-01	THSD4	ENST00000567838.1,ENST00000357769.4,ENST00000355327.3,ENST00000261862.6	chr15	72040759:72040933:72050240:72050414:72057358:72057538,	72050241	72050414	72050319	72050319	Nonsense_Mutation	G	T	p.E832*
BRCA	TCGA-BH-A204-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30020140:30020223:30024636:30024732:30024834:30025019,	30024637	30024732	30024679	30024679	Nonsense_Mutation	C	A	p.E659*
BRCA	TCGA-BH-A0BZ-01	TMEM131	ENST00000186436.5	chr2	98392305:98392481:98408848:98409447:98409857:98410016,	98408849	98409447	98409038	98409038	Nonsense_Mutation	C	A	p.E1319*
BRCA	TCGA-C8-A275-01	TMTC1	ENST00000381224.2,ENST00000539277.1,ENST00000319685.8,ENST00000256062.5,ENST00000551659.1,ENST00000553189.1	chr12	29689141:29689250:29709789:29709933:29725037:29725151,	29709790	29709933	29709842	29709842	Nonsense_Mutation	G	A	p.Q434*
BRCA	TCGA-A1-A0SO-01	TNFRSF11B	ENST00000521597.1,ENST00000297350.4	chr8	119936713:119937001:119938732:119938957:119940976:119941168,	119938733	119938957	119938847	119938847	Nonsense_Mutation	C	A	p.E235*
BRCA	TCGA-A8-A09G-01	TNPO1	ENST00000337273.5,ENST00000513944.1,ENST00000506351.2,ENST00000509030.1	chr5	72147070:72147146:72151600:72151750:72157634:72157741,	72151601	72151750	72151660	72151660	Nonsense_Mutation	C	T	p.Q89*
BRCA	TCGA-E2-A1IJ-01	TNRC6C	ENST00000301624.4,ENST00000541771.1,ENST00000544502.1,ENST00000588847.1,ENST00000335749.4,ENST00000588061.1	chr17	76087520:76087688:76089013:76089205:76089700:76089844,	76089014	76089205	76089144	76089144	Nonsense_Mutation	G	A	p.W1364*
BRCA	TCGA-E9-A1RF-01	TNS1	ENST00000479185.1	chr2	218713606:218713810:218745620:218747134:218749757:218749887,	218745621	218747134	218745658	218745658	Nonsense_Mutation	G	A	p.R115*
BRCA	TCGA-E9-A1RF-01	TNS1	ENST00000430930.1,ENST00000446903.1,ENST00000413554.1,ENST00000419504.1,ENST00000171887.4	chr2	218713606:218713810:218745620:218745737:218747068:218747134,	218745621	218745737	218745658	218745658	Nonsense_Mutation	G	A	p.R115*
BRCA	TCGA-E9-A228-01	TOX4	ENST00000448790.2,ENST00000262709.3,ENST00000405508.1,ENST00000455393.1	chr14	21960666:21961416:21963387:21963551:21964703:21964913,	21963388	21963551	21963403	21963403	Nonsense_Mutation	C	T	p.Q553*
BRCA	TCGA-D8-A1XA-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
BRCA	TCGA-C8-A1HK-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577100	7577100	Nonsense_Mutation	T	A	p.R280*
BRCA	TCGA-BH-A202-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
BRCA	TCGA-D8-A1Y3-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
BRCA	TCGA-EW-A1PA-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
BRCA	TCGA-C8-A1HJ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
BRCA	TCGA-D8-A27M-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
BRCA	TCGA-E9-A1N9-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
BRCA	TCGA-EW-A1OY-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
BRCA	TCGA-AR-A254-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579315	Nonsense_Mutation	G	T	p.C124*
BRCA	TCGA-E9-A243-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91*
BRCA	TCGA-A2-A0YJ-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
BRCA	TCGA-AN-A0G0-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
BRCA	TCGA-BH-A0RX-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
BRCA	TCGA-E2-A1B6-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
BRCA	TCGA-A2-A0D1-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BRCA	TCGA-BH-A18H-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
BRCA	TCGA-AO-A0JL-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
BRCA	TCGA-A7-A13D-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578188	7578188	Nonsense_Mutation	C	A	p.E221*
BRCA	TCGA-AO-A124-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
BRCA	TCGA-AO-A0JB-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
BRCA	TCGA-B6-A0IQ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
BRCA	TCGA-E2-A14X-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
BRCA	TCGA-AR-A0TS-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198*
BRCA	TCGA-A2-A0CW-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
BRCA	TCGA-A2-A0D0-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
BRCA	TCGA-AR-A1AP-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
BRCA	TCGA-B6-A0RU-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
BRCA	TCGA-E2-A14N-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
BRCA	TCGA-B6-A0WX-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579346	7579346	Nonsense_Mutation	A	T	p.L114*
BRCA	TCGA-BH-A18V-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579521	7579521	Nonsense_Mutation	C	A	p.E56*
BRCA	TCGA-AO-A129-01	TP53I3	ENST00000238721.4,ENST00000335934.4	chr2	24300503:24300631:24303688:24303901:24305754:24306022,24302371:24302510:24303688:24303901:24305754:24306022,	24303689	24303901	24303814	24303814	Nonsense_Mutation	C	T	p.W126*
BRCA	TCGA-D8-A1J9-01	TPD52	ENST00000518937.1,ENST00000521241.2,ENST00000517462.2,ENST00000520527.1,ENST00000519303.2	chr8	80954854:80954903:80956401:80956443:80963761:80963863,80954854:80954903:80956401:80956443:80962679:80962706,	80956402	80956443	80956423	80956423	Nonsense_Mutation	G	C	p.S145*
BRCA	TCGA-C8-A274-01	TRAF3	ENST00000351691.5,ENST00000560371.1,ENST00000347662.4,ENST00000559734.1,ENST00000392745.2	chr14	103342694:103342862:103363597:103363738:103369591:103369766,103357661:103357754:103363597:103363738:103369591:103369766,	103363598	103363738	103363658	103363658	Nonsense_Mutation	C	T	p.Q294*
BRCA	TCGA-A2-A0EV-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3	chr3	42226176:42226293:42229536:42229637:42230507:42230616,	42229537	42229637	42229603	42229603	Nonsense_Mutation	G	T	p.E183*
BRCA	TCGA-AR-A0TZ-01	TRAPPC9	ENST00000521667.1,ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	141231557:141231682:141262875:141263028:141285756:141285920,	141262876	141263028	141262906	141262906	Nonsense_Mutation	G	A	p.Q899*
BRCA	TCGA-BH-A0BC-01	TRAT1	ENST00000493604.1,ENST00000478830.1	chr3	108541618:108541781:108549516:108549627:108557780:108557814,	108549517	108549627	108549621	108549621	Nonsense_Mutation	C	T	p.R38*
BRCA	TCGA-EW-A1J5-01	TRIM22	ENST00000425490.1,ENST00000414897.1,ENST00000414641.1,ENST00000379965.3	chr11	5717731:5717885:5718477:5718573:5719544:5719636,	5718478	5718573	5718549	5718549	Nonsense_Mutation	C	T	p.Q76*
BRCA	TCGA-A8-A07B-01	TRIM24	ENST00000343526.4,ENST00000464210.1,ENST00000497516.1,ENST00000415680.2	chr7	138199956:138200104:138203933:138204066:138209985:138210059,	138203934	138204066	138203954	138203954	Nonsense_Mutation	C	T	p.Q218*
BRCA	TCGA-E9-A228-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57125043:57125180:57126538:57126754:57128574:57128689,	57126539	57126754	57126638	57126638	Nonsense_Mutation	G	T	p.C477*
BRCA	TCGA-E2-A153-01	TRMT5	ENST00000261249.6	chr14	61442192:61442844:61444231:61444356:61445948:61446604,	61444232	61444356	61444282	61444282	Nonsense_Mutation	G	A	p.R248*
BRCA	TCGA-BH-A0DS-01	TRPM8	ENST00000490797.1,ENST00000324695.4	chr2	234875278:234875399:234878338:234878451:234878853:234879070,	234878339	234878451	234878392	234878392	Nonsense_Mutation	G	A	p.W693*
BRCA	TCGA-A2-A1FX-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98524789:98524989:98527611:98527829:98528255:98528453,	98527612	98527829	98527687	98527687	Nonsense_Mutation	C	T	p.R799*
BRCA	TCGA-BH-A0DQ-01	TSGA10	ENST00000539964.1,ENST00000393483.3,ENST00000355053.4,ENST00000410001.1	chr2	99614659:99614684:99634662:99634812:99634998:99635103,	99634663	99634812	99634761	99634761	Nonsense_Mutation	A	T	p.Y658*
BRCA	TCGA-A1-A0SP-01	TXNDC16	ENST00000281741.4	chr14	52957556:52957723:52977957:52978108:52981597:52981688,	52977958	52978108	52978095	52978095	Nonsense_Mutation	C	A	p.E207*
BRCA	TCGA-E2-A1IU-01	TYRP1	ENST00000388918.5	chr9	12695739:12695837:12698450:12698655:12702270:12702438,	12698451	12698655	12698600	12698600	Nonsense_Mutation	G	A	p.W286*
BRCA	TCGA-C8-A12P-01	UBAP2	ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33943417:33943587:33944362:33944637:33948371:33948585,	33944363	33944637	33944419	33944419	Nonsense_Mutation	G	A	p.Q497*
BRCA	TCGA-AQ-A04L-01	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103269859:103269945:103271212:103271357:103273373:103273487,	103271213	103271357	103271312	103271312	Nonsense_Mutation	C	A	p.E2668*
BRCA	TCGA-AR-A1AR-01	UCK2	ENST00000464197.1,ENST00000462329.1,ENST00000470820.1,ENST00000479872.1,ENST00000372212.4,ENST00000367879.4,ENST00000469256.2,ENST00000463772.1	chr1	165873302:165873404:165875157:165875206:165876920:165877027,165872418:165872516:165875157:165875206:165876920:165877027,	165875158	165875206	165875164	165875164	Nonsense_Mutation	A	T	p.K202*
BRCA	TCGA-A8-A06U-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12071392	12071392	Nonsense_Mutation	G	C	p.S166*
BRCA	TCGA-D8-A1J9-01	USE1	ENST00000445667.2,ENST00000600970.1,ENST00000593597.1,ENST00000263897.5,ENST00000594724.1	chr19	17329180:17329200:17330021:17330196:17330439:17330449,	17330022	17330196	17330038	17330038	Nonsense_Mutation	C	T	p.Q147*
BRCA	TCGA-E9-A1RE-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910497	62910497	Nonsense_Mutation	C	T	p.Q216*
BRCA	TCGA-A8-A09A-01	USP34	ENST00000453734.1,ENST00000398571.2	chr2	61486845:61486911:61492531:61492692:61493118:61493174,	61492532	61492692	61492665	61492665	Nonsense_Mutation	C	T	p.W1882*
BRCA	TCGA-E9-A1NF-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82834037	82834037	Nonsense_Mutation	G	T	p.E1739*
BRCA	TCGA-AR-A1AV-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82817939	82817939	Nonsense_Mutation	G	T	p.E1272*
BRCA	TCGA-BH-A0BP-01	VSIG10	ENST00000359236.5	chr12	118509163:118509274:118511503:118511797:118517150:118517411,	118511504	118511797	118511558	118511558	Nonsense_Mutation	G	A	p.R389*
BRCA	TCGA-A2-A0YT-01	VWF	ENST00000261405.5,ENST00000538635.1	chr12	6220031:6220134:6230339:6230504:6232307:6232362,	6230340	6230504	6230460	6230460	Nonsense_Mutation	G	A	p.R34*
BRCA	TCGA-C8-A1HN-01	VWF	ENST00000261405.5,ENST00000538635.1	chr12	6220031:6220134:6230339:6230504:6232307:6232362,	6230340	6230504	6230460	6230460	Nonsense_Mutation	G	A	p.R34*
BRCA	TCGA-E9-A1NH-01	WAS	ENST00000483750.1,ENST00000376701.4	chrX	48544469:48544523:48545169:48545344:48546442:48546485,	48545170	48545344	48545241	48545241	Nonsense_Mutation	C	T	p.R211*
BRCA	TCGA-AR-A24H-01	WDFY4	ENST00000325239.5	chr10	49986655:49986877:49987985:49988164:49994683:49994915,	49987986	49988164	49988074	49988074	Nonsense_Mutation	G	A	p.W1162*
BRCA	TCGA-A2-A259-01	WDR72	ENST00000360509.5	chr15	54014998:54015105:54025193:54025358:54051829:54051859,	54025194	54025358	54025259	54025259	Nonsense_Mutation	G	A	p.R30*
BRCA	TCGA-B6-A0WS-01	WDR74	ENST00000541930.1	chr11	62603233:62603313:62603390:62603508:62606585:62606707,	62603391	62603508	62603453	62603453	Nonsense_Mutation	T	A	p.K117*
BRCA	TCGA-B6-A0WS-01	WDR74	ENST00000545112.1,ENST00000529106.1,ENST00000525239.1,ENST00000311713.7,ENST00000540620.1,ENST00000525752.1,ENST00000542347.1,ENST00000453708.2,ENST00000278856.4	chr11	62603233:62603313:62603432:62603508:62606585:62606707,	62603433	62603508	62603453	62603453	Nonsense_Mutation	T	A	p.K117*
BRCA	TCGA-A8-A07F-01	WTAP	ENST00000337387.4,ENST00000358372.4	chr6	160160021:160160077:160163119:160163178:160164696:160164726,	160163120	160163178	160163165	160163165	Nonsense_Mutation	C	A	p.Y44*
BRCA	TCGA-C8-A274-01	WWP1	ENST00000341922.2,ENST00000349423.2,ENST00000265428.4,ENST00000517970.1	chr8	87460601:87460742:87464787:87464908:87470149:87470250,	87464788	87464908	87464813	87464813	Nonsense_Mutation	C	T	p.R767*
BRCA	TCGA-E9-A295-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104572	168104572	Nonsense_Mutation	G	T	p.E2224*
BRCA	TCGA-D8-A1J9-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106216	168106216	Nonsense_Mutation	C	T	p.Q2772*
BRCA	TCGA-A8-A084-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21314181:21314256:21314341:21314475:21314574:21314632,	21314342	21314475	21314348	21314348	Nonsense_Mutation	G	T	p.E314*
BRCA	TCGA-A2-A0YK-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61835143	61835143	Nonsense_Mutation	G	C	p.S50*
BRCA	TCGA-B6-A0RE-01	ZC3HC1	ENST00000311873.5,ENST00000467642.1,ENST00000481503.1,ENST00000358303.4	chr7	129662158:129662365:129663350:129663563:129664102:129664217,	129663351	129663563	129663533	129663533	Nonsense_Mutation	G	A	p.R351*
BRCA	TCGA-A2-A0YK-01	ZCCHC17	ENST00000479629.1,ENST00000546109.1,ENST00000373714.1,ENST00000344147.5,ENST00000422613.2	chr1	31810021:31810122:31811803:31811895:31819486:31819587,	31811804	31811895	31811816	31811816	Nonsense_Mutation	A	T	p.R80*
BRCA	TCGA-A1-A0SO-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1	chr11	57464232:57464345:57466030:57466890:57467337:57467835,	57466031	57466890	57466569	57466569	Nonsense_Mutation	C	G	p.S554*
BRCA	TCGA-D8-A1XO-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72832413	72832413	Nonsense_Mutation	G	A	p.Q1390*
BRCA	TCGA-C8-A12T-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827828	72827828	Nonsense_Mutation	G	C	p.S2918*
BRCA	TCGA-BH-A0HQ-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830109	72830109	Nonsense_Mutation	G	A	p.R2158*
BRCA	TCGA-A2-A0CX-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830478	72830478	Nonsense_Mutation	G	A	p.Q2035*
BRCA	TCGA-D8-A1XW-01	ZNF208	ENST00000601773.1,ENST00000397126.4	chr19	22170017:22170113:22171584:22171711:22193593:22193721,	22171585	22171711	22171632	22171632	Nonsense_Mutation	A	C	p.L28*
BRCA	TCGA-E2-A156-01	ZNF215	ENST00000527171.1	chr11	6962801:6962884:6964776:6964872:6976920:6977013,	6964777	6964872	6964815	6964815	Nonsense_Mutation	G	T	p.E219*
BRCA	TCGA-BH-A0DS-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405737	91405737	Nonsense_Mutation	C	A	p.E392*
BRCA	TCGA-AQ-A04L-01	ZNF720	ENST00000534277.1	chr16	31724626:31724756:31733946:31734073:31734578:31734674,31724593:31724769:31733946:31734073:31734578:31734674,	31733947	31734073	31734054	31734054	Nonsense_Mutation	C	A	p.Y37*
BRCA	TCGA-AR-A0TT-01	ZSCAN12	ENST00000396827.3,ENST00000361028.1	chr6	28349967:28350386:28358372:28359519:28360678:28360823,	28358373	28359519	28358993	28358993	Nonsense_Mutation	A	C	p.Y358*
BRCA	TCGA-AN-A0XN-01	ZSCAN23	ENST00000289788.4	chr6	28403236:28403384:28403635:28404120:28411175:28411244,	28403636	28404120	28403825	28403825	Nonsense_Mutation	G	T	p.C73*
BRCA	TCGA-A2-A04V-01	TMIGD2	ENST00000595645.1	chr19	4292595:4292882:4294575:4294677:4294771:4294813,	4294576	4294677	4294613	4294613	Nonsense_Mutation	C	T	p.W171*
BRCA	TCGA-A2-A04V-01	TMIGD2	ENST00000301272.2,ENST00000600114.1	chr19	4292595:4292882:4294563:4294677:4294771:4294813,	4294564	4294677	4294613	4294613	Nonsense_Mutation	C	T	p.W171*
BRCA	TCGA-AN-A0AR-01	SCRN1	ENST00000409570.1	chr7	29994794:29994976:30008524:30008684:30029558:30029688,29994794:29994976:30008524:30008684:30029257:30029328,	30008525	30008684	30008626	30008626	Nonsense_Mutation	C	T	p.W56*
BRCA	TCGA-AN-A0AR-01	SCRN1	ENST00000494620.1	chr7	29994794:29994976:30008524:30008629:30029558:30029688,	30008525	30008629	30008626	30008626	Nonsense_Mutation	C	T	p.W56*
BRCA	TCGA-BH-A0HP-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539336.2,ENST00000606320.1,ENST00000302349.5	chr12	123687431:123687631:123687796:123687922:123694602:123694709,	123687797	123687922	123687907	123687907	Nonsense_Mutation	C	A	p.E252*
BRCA	TCGA-AN-A0XW-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225333027:225333081:225334805:225334951:225339706:225339775,	225334806	225334951	225334811	225334811	Nonsense_Mutation	G	T	p.*251L
BRCA	TCGA-AN-A0XW-01	DNAH14	ENST00000328556.5	chr1	225333027:225333081:225334805:225334957:225339706:225339775,	225334806	225334957	225334811	225334811	Nonsense_Mutation	G	T	p.*251L
BRCA	TCGA-BH-A0WA-01	AGAP1	ENST00000409538.1,ENST00000336665.5	chr2	236839408:236839567:236877105:236877267:236945204:236945341,236817485:236817550:236877105:236877267:236945204:236945341,	236877106	236877267	236877203	236877203	Nonsense_Mutation	G	T	p.E55*
BRCA	TCGA-A2-A0T0-01	NARF	ENST00000412079.2,ENST00000581795.1	chr17	80430439:80430574:80436446:80436543:80436675:80436703,80426639:80426772:80436446:80436543:80436675:80436703,	80436447	80436543	80436510	80436510	Nonsense_Mutation	C	T	p.R35*
BRCA	TCGA-A7-A0DB-01	ACAA1	ENST00000444607.2,ENST00000333167.8,ENST00000301810.7,ENST00000421218.1,ENST00000411549.1	chr3	38173416:38173496:38175442:38175500:38178082:38178115,	38175443	38175500	38175453	38175453	Nonsense_Mutation	G	A	p.Q105*
BRCA	TCGA-AN-A0XO-01	AMPD1	ENST00000353928.6	chr1	115231181:115231362:115236056:115236068:115238070:115238207,	115236057	115236068	115236057	115236057	Nonsense_Mutation	G	A	p.Q12*
BRCA	TCGA-D8-A142-01	MYOT	ENST00000509812.1,ENST00000421631.2	chr5	137206129:137206214:137211517:137211692:137213208:137213310,	137211518	137211692	137211662	137211662	Nonsense_Mutation	C	A	p.C167*
BRCA	TCGA-BH-A0H7-01	XPNPEP3	ENST00000414396.1,ENST00000357137.4,ENST00000541156.1	chr22	41253134:41253249:41265002:41265119:41277773:41277928,	41265003	41265119	41265020	41265020	Nonsense_Mutation	C	T	p.Q28*
CESC	TCGA-EK-A2RJ-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000359206.3	chr7	87038551:87038708:87041208:87041349:87042932:87043033,	87041209	87041349	87041264	87041264	Nonsense_Mutation	G	A	p.R957*
CESC	TCGA-C5-A1M6-01	ABCC3	ENST00000505699.1,ENST00000502426.1,ENST00000503337.1,ENST00000285238.8	chr17	48760970:48761117:48761309:48761468:48762069:48762236,	48761310	48761468	48761448	48761448	Nonsense_Mutation	C	T	p.Q1365*
CESC	TCGA-JW-A5VL-01	ABHD8	ENST00000247706.3	chr19	17402939:17403640:17405096:17405313:17405483:17405654,	17405097	17405313	17405099	17405099	Nonsense_Mutation	C	A	p.E383*
CESC	TCGA-FU-A57G-01	ACSM2B	ENST00000565232.1,ENST00000329697.6,ENST00000569364.1,ENST00000567288.1,ENST00000563943.1,ENST00000565322.1,ENST00000567001.1	chr16	20557721:20557796:20559383:20559507:20559715:20559795,	20559384	20559507	20559410	20559410	Nonsense_Mutation	G	A	p.R358*
CESC	TCGA-C5-A1BN-01	ACTN1	ENST00000553290.1	chr14	69347526:69347706:69349174:69349309:69350884:69351012,	69349175	69349309	69349243	69349243	Nonsense_Mutation	C	A	p.E629*
CESC	TCGA-JW-A5VI-01	ACTR2	ENST00000260641.5	chr2	65466985:65467096:65473657:65473873:65478160:65478233,	65473658	65473873	65473736	65473736	Nonsense_Mutation	C	T	p.R85*
CESC	TCGA-IR-A3LL-01	ADAM9	ENST00000487273.2,ENST00000481873.3,ENST00000379917.3,ENST00000468065.1	chr8	38880674:38880844:38883321:38883403:38884195:38884329,	38883322	38883403	38883375	38883375	Nonsense_Mutation	C	G	p.S323*
CESC	TCGA-EK-A2RA-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000355842.3,ENST00000446856.1	chr4	2900985:2901162:2906490:2906742:2909469:2909540,	2906491	2906742	2906520	2906520	Nonsense_Mutation	C	A	p.Y397*
CESC	TCGA-EK-A2RA-01	ADD1	ENST00000398123.2,ENST00000264758.7,ENST00000514940.1,ENST00000398125.1,ENST00000503455.2	chr4	2900985:2901162:2906490:2906835:2909469:2909540,	2906491	2906835	2906520	2906520	Nonsense_Mutation	C	A	p.Y397*
CESC	TCGA-C5-A2LZ-01	ADD1	ENST00000513762.1	chr4	2909556:2909571:2910241:2911158:2916610:2916767,	2910242	2911158	2910284	2910284	Nonsense_Mutation	C	T	p.Q551*
CESC	TCGA-C5-A2LZ-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000398123.2,ENST00000264758.7,ENST00000514940.1,ENST00000446856.1,ENST00000541051.1,ENST00000398125.1,ENST00000503455.2	chr4	2909556:2909571:2910241:2910331:2916610:2916767,	2910242	2910331	2910284	2910284	Nonsense_Mutation	C	T	p.Q551*
CESC	TCGA-C5-A1MQ-01	AGBL5	ENST00000487078.1,ENST00000489683.1,ENST00000477136.1,ENST00000323064.8,ENST00000360131.4	chr2	27276269:27276441:27276763:27276927:27277497:27277675,	27276764	27276927	27276872	27276872	Nonsense_Mutation	G	T	p.E166*
CESC	TCGA-LP-A7HU-01	AGBL5	ENST00000487078.1,ENST00000323064.8,ENST00000360131.4	chr2	27280170:27280306:27281267:27281470:27282057:27282272,	27281268	27281470	27281371	27281371	Nonsense_Mutation	G	A	p.W592*
CESC	TCGA-EK-A2R7-01	AKAP11	ENST00000025301.2	chr13	42888029:42888076:42891663:42891824:42893223:42897396,	42891664	42891824	42891750	42891750	Nonsense_Mutation	C	T	p.Q1831*
CESC	TCGA-C5-A2LZ-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735736	4735736	Nonsense_Mutation	G	A	p.Q778*
CESC	TCGA-EK-A3GJ-01	AMBP	ENST00000265132.3	chr9	116822406:116822550:116823204:116823378:116823703:116823871,	116823205	116823378	116823271	116823271	Nonsense_Mutation	G	A	p.Q321*
CESC	TCGA-EK-A2R8-01	AMBRA1	ENST00000533727.1,ENST00000528950.1,ENST00000426438.1	chr11	46515673:46515754:46529740:46529920:46534276:46534363,46515673:46515754:46529740:46529920:46563494:46564531,	46529741	46529920	46529873	46529873	Nonsense_Mutation	G	C	p.S736*
CESC	TCGA-C5-A1BL-01	AMMECR1L	ENST00000272647.5,ENST00000393001.1	chr2	128628387:128628502:128628822:128628933:128631401:128631836,	128628823	128628933	128628868	128628868	Nonsense_Mutation	G	C	p.S158*
CESC	TCGA-DG-A2KK-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112066006	112066006	Nonsense_Mutation	G	A	p.Q117*
CESC	TCGA-C5-A1M7-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61835654	61835654	Nonsense_Mutation	G	C	p.S1662*
CESC	TCGA-C5-A1BQ-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255252	9255252	Nonsense_Mutation	G	T	p.E663*
CESC	TCGA-DS-A7WH-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255690	9255690	Nonsense_Mutation	G	T	p.E809*
CESC	TCGA-EK-A2PL-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73956516	73956516	Nonsense_Mutation	G	A	p.Q2277*
CESC	TCGA-EA-A78R-01	ANXA5	ENST00000296511.5,ENST00000506395.1,ENST00000509016.1,ENST00000513428.1,ENST00000511552.1	chr4	122604518:122604632:122605831:122605926:122607442:122607527,	122605832	122605926	122605888	122605888	Nonsense_Mutation	G	A	p.R45*
CESC	TCGA-IR-A3LI-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000450149.2,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3	chr16	71795414:71795470:71798252:71798351:71798548:71798578,	71798253	71798351	71798269	71798269	Nonsense_Mutation	G	C	p.S324*
CESC	TCGA-C5-A1BJ-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909044	24909044	Nonsense_Mutation	G	A	p.Q594*
CESC	TCGA-C5-A1MQ-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000528225.1,ENST00000532993.1,ENST00000356641.3	chr11	120312415:120312526:120312812:120312911:120316130:120316173,	120312813	120312911	120312840	120312840	Nonsense_Mutation	A	T	p.K392*
CESC	TCGA-C5-A7UE-01	ARHGEF7	ENST00000375737.5,ENST00000375739.2,ENST00000375741.2,ENST00000375723.1,ENST00000466143.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5	chr13	111806251:111806338:111870025:111870227:111885551:111885640,111857635:111857720:111870025:111870227:111885551:111885640,111862218:111862349:111870025:111870227:111885551:111885640,	111870026	111870227	111870159	111870159	Nonsense_Mutation	G	A	p.W222*
CESC	TCGA-DS-A7WH-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088756	27088756	Nonsense_Mutation	C	T	p.Q789*
CESC	TCGA-C5-A1MK-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27100988	27100988	Nonsense_Mutation	C	T	p.Q1424*
CESC	TCGA-C5-A1MQ-01	ARIH2	ENST00000482427.1,ENST00000490095.1,ENST00000356401.4,ENST00000478224.1,ENST00000449376.1,ENST00000483333.1,ENST00000472640.1,ENST00000430423.1,ENST00000452385.1,ENST00000474936.2,ENST00000484999.1	chr3	48999044:48999112:49002351:49002415:49004557:49004584,	49002352	49002415	49002355	49002355	Nonsense_Mutation	C	G	p.Y109*
CESC	TCGA-LP-A7HU-01	ARPP21	ENST00000187397.4	chr3	35770794:35771028:35778669:35778854:35780808:35781069,	35778670	35778854	35778726	35778726	Nonsense_Mutation	C	T	p.Q472*
CESC	TCGA-C5-A1MN-01	ASCC3	ENST00000324723.6,ENST00000522650.1,ENST00000468245.2,ENST00000369162.2	chr6	101296295:101296583:101311939:101312090:101315783:101315908,	101311940	101312090	101312040	101312040	Nonsense_Mutation	C	T	p.W47*
CESC	TCGA-C5-A1MJ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197069809	197069809	Nonsense_Mutation	G	A	p.Q2858*
CESC	TCGA-JW-A5VG-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108175401:108175579:108178623:108178711:108180886:108181042,	108178624	108178711	108178704	108178704	Nonsense_Mutation	C	T	p.Q1919*
CESC	TCGA-Q1-A73P-01	ATP11C	ENST00000460773.1	chrX	138810944:138811121:138813809:138813914:138820074:138820228,138810944:138811121:138813809:138813914:138814593:138814684,	138813810	138813914	138813883	138813883	Nonsense_Mutation	G	T	p.S1110*
CESC	TCGA-EA-A6QX-01	ATP7B	ENST00000400370.3,ENST00000417240.2,ENST00000242839.4,ENST00000344297.5,ENST00000448424.2,ENST00000418097.2,ENST00000400366.3	chr13	52511411:52511529:52511611:52511815:52513186:52513329,	52511612	52511815	52511638	52511638	Nonsense_Mutation	C	A	p.E1293*
CESC	TCGA-C5-A1BM-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437782	52437782	Nonsense_Mutation	G	C	p.S460*
CESC	TCGA-EK-A2RC-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437848	52437848	Nonsense_Mutation	G	C	p.S438*
CESC	TCGA-EA-A44S-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439883	52439883	Nonsense_Mutation	G	A	p.Q277*
CESC	TCGA-EK-A2RB-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439883	52439883	Nonsense_Mutation	G	A	p.Q277*
CESC	TCGA-JW-A5VL-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646072	215646072	Nonsense_Mutation	G	A	p.Q176*
CESC	TCGA-MU-A51Y-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122749773:122749883:122754385:122754550:122756298:122756438,	122754386	122754550	122754426	122754426	Nonsense_Mutation	G	A	p.Q546*
CESC	TCGA-LP-A4AV-01	BCAS3	ENST00000407086.3,ENST00000585744.1,ENST00000588462.1,ENST00000408905.3,ENST00000390652.5,ENST00000589222.1,ENST00000585979.1,ENST00000588874.1	chr17	59155801:59155890:59161827:59161925:59445687:59445703,	59161828	59161925	59161923	59161923	Nonsense_Mutation	C	G	p.S823*
CESC	TCGA-JX-A3PZ-01	BEND6	ENST00000370746.3,ENST00000370748.3,ENST00000370745.1	chr6	56820169:56820258:56846508:56846728:56857175:56857353,	56846509	56846728	56846694	56846694	Nonsense_Mutation	C	G	p.S29*
CESC	TCGA-C5-A1BQ-01	BPTF	ENST00000335221.5,ENST00000424123.3,ENST00000321892.4	chr17	65871035:65871136:65887959:65888150:65889485:65889672,65882243:65882432:65887959:65888150:65889485:65889672,	65887960	65888150	65888035	65888035	Nonsense_Mutation	C	G	p.S773*
CESC	TCGA-EK-A2RK-01	BRAF	ENST00000469930.1,ENST00000288602.6,ENST00000497784.1	chr7	140534408:140534672:140549910:140550012:140624365:140624458,	140549911	140550012	140550007	140550007	Nonsense_Mutation	C	T	p.W48*
CESC	TCGA-MU-A51Y-01	BTN3A1	ENST00000082468.7,ENST00000425234.2,ENST00000289361.6,ENST00000414912.2,ENST00000476549.2	chr6	26408054:26408180:26409760:26409961:26410121:26410142,	26409761	26409961	26409930	26409930	Nonsense_Mutation	G	A	p.W295*
CESC	TCGA-MY-A5BD-01	C19orf57	ENST00000346736.2,ENST00000591586.1,ENST00000454313.1,ENST00000586783.1	chr19	14003598:14003703:14003954:14004036:14006184:14006359,	14003955	14004036	14003957	14003957	Nonsense_Mutation	G	A	p.Q96*
CESC	TCGA-FU-A2QG-01	C8G	ENST00000371634.2,ENST00000224181.3	chr9	139840145:139840222:139840380:139840451:139840536:139840644,	139840381	139840451	139840397	139840397	Nonsense_Mutation	C	T	p.Q98*
CESC	TCGA-EK-A2RK-01	CABYR	ENST00000486759.2	chr18	21719060:21719082:21723054:21723223:21735664:21735718,	21723055	21723223	21723170	21723170	Nonsense_Mutation	C	G	p.S31*
CESC	TCGA-EA-A5ZE-01	CALU	ENST00000535011.2,ENST00000249364.4,ENST00000479257.1	chr7	128388680:128388858:128394315:128394509:128394582:128394776,128388626:128388858:128394315:128394509:128398924:128399091,	128394316	128394509	128394425	128394425	Nonsense_Mutation	C	T	p.R111*
CESC	TCGA-EA-A3Y4-01	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000389645.3,ENST00000529307.1,ENST00000530820.1	chr11	34098106:34098189:34101174:34101312:34104371:34104424,	34101175	34101312	34101277	34101277	Nonsense_Mutation	C	G	p.S264*
CESC	TCGA-DS-A0VL-01	CASP8	ENST00000392258.3,ENST00000392266.3,ENST00000413726.1,ENST00000392259.2,ENST00000432109.2,ENST00000323492.7,ENST00000447616.1,ENST00000264274.9,ENST00000358485.4,ENST00000392263.2,ENST00000339403.6,ENST00000471383.1,ENST00000437283.1	chr2	202131209:202131514:202136238:202136344:202137360:202137448,	202136239	202136344	202136259	202136259	Nonsense_Mutation	C	G	p.S168*
CESC	TCGA-UC-A7PF-01	CATSPERD	ENST00000381614.2,ENST00000381624.3	chr19	5729882:5729955:5733866:5733981:5737148:5737216,	5733867	5733981	5733954	5733954	Nonsense_Mutation	G	T	p.E122*
CESC	TCGA-EX-A69M-01	CBLC	ENST00000341505.4,ENST00000270279.3	chr19	45293260:45293348:45295639:45295771:45296730:45296787,	45295640	45295771	45295767	45295767	Nonsense_Mutation	G	A	p.W378*
CESC	TCGA-LP-A5U2-01	CC2D2A	ENST00000506643.1	chr4	15591249:15591302:15597766:15597830:15599029:15599088,	15597767	15597830	15597793	15597793	Nonsense_Mutation	C	G	p.S1467*
CESC	TCGA-LP-A5U2-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000424120.1,ENST00000389652.5	chr4	15591249:15591302:15597707:15597830:15599029:15599088,	15597708	15597830	15597793	15597793	Nonsense_Mutation	C	G	p.S1467*
CESC	TCGA-Q1-A73P-01	CCDC126	ENST00000409765.1	chr7	23637585:23637670:23650789:23651172:23682549:23682555,23637133:23637224:23650789:23651172:23682549:23682555,	23650790	23651172	23651037	23651037	Nonsense_Mutation	C	T	p.Q35*
CESC	TCGA-LP-A5U2-01	CCDC3	ENST00000378839.1	chr10	12938626:12940679:13040337:13040512:13091673:13091941,	13040338	13040512	13040405	13040405	Nonsense_Mutation	G	C	p.S161*
CESC	TCGA-EK-A2H0-01	CCDC77	ENST00000239830.4,ENST00000540344.1,ENST00000543504.1,ENST00000422000.1,ENST00000540180.1,ENST00000412006.2	chr12	537934:538031:539829:539902:541031:541120,	539830	539902	539854	539854	Nonsense_Mutation	C	T	p.Q179*
CESC	TCGA-LP-A4AV-01	CCDC88C	ENST00000389857.6,ENST00000554872.1	chr14	91806227:91806368:91808723:91808807:91809942:91810001,	91808724	91808807	91808753	91808753	Nonsense_Mutation	G	A	p.Q152*
CESC	TCGA-IR-A3LA-01	CD1E	ENST00000368161.3	chr1	158325317:158325359:158325616:158325791:158326287:158326381,	158325617	158325791	158325754	158325754	Nonsense_Mutation	C	T	p.Q255*
CESC	TCGA-IR-A3LA-01	CD1E	ENST00000368160.3,ENST00000444681.2,ENST00000368167.3	chr1	158325317:158325359:158325616:158325895:158326287:158326381,	158325617	158325895	158325754	158325754	Nonsense_Mutation	C	T	p.Q255*
CESC	TCGA-C5-A7UH-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117086981	117086981	Nonsense_Mutation	C	A	p.E106*
CESC	TCGA-EK-A2H0-01	CD70	ENST00000423145.3	chr19	6583193:6583489:6586164:6586416:6590113:6590147,	6586165	6586416	6586411	6586411	Nonsense_Mutation	G	A	p.Q68*
CESC	TCGA-DS-A0VM-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247376	45247376	Nonsense_Mutation	C	A	p.E46*
CESC	TCGA-FU-A3HY-01	CELA3A	ENST00000374663.1	chr1	22328152:22328210:22329495:22329581:22331939:22332037,	22329496	22329581	22329579	22329579	Nonsense_Mutation	C	T	p.Q43*
CESC	TCGA-LP-A7HU-01	CEP164	ENST00000533223.1,ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117265838:117265907:117266262:117266438:117266769:117266896,	117266263	117266438	117266344	117266344	Nonsense_Mutation	G	T	p.E999*
CESC	TCGA-DG-A2KK-01	CES3	ENST00000570236.1,ENST00000394037.1,ENST00000566746.1	chr16	66995205:66995292:66997081:66997286:66997393:66997524,	66997082	66997286	66997226	66997226	Nonsense_Mutation	C	G	p.S76*
CESC	TCGA-JW-A5VJ-01	CHD2	ENST00000557381.1,ENST00000557759.1,ENST00000394196.4	chr15	93555574:93555674:93557925:93558139:93563241:93563303,	93557926	93558139	93558026	93558026	Nonsense_Mutation	C	G	p.S1598*
CESC	TCGA-DG-A2KL-01	CHFR	ENST00000432561.2,ENST00000536196.1,ENST00000540963.1,ENST00000315585.7,ENST00000535181.1,ENST00000537551.1,ENST00000450056.2,ENST00000266880.7,ENST00000443047.2	chr12	133448870:133448980:133454140:133454240:133463781:133463926,	133454141	133454240	133454168	133454168	Nonsense_Mutation	G	C	p.S69*
CESC	TCGA-FU-A3NI-01	CHRNB1	ENST00000576360.1	chr17	7351897:7352107:7357762:7357839:7358602:7358775,	7357763	7357839	7357837	7357837	Nonsense_Mutation	C	T	p.Q348*
CESC	TCGA-FU-A3NI-01	CHRNB1	ENST00000573209.1,ENST00000536404.2,ENST00000306071.2	chr17	7351897:7352107:7357615:7357839:7358602:7358775,	7357616	7357839	7357837	7357837	Nonsense_Mutation	C	T	p.Q348*
CESC	TCGA-EA-A3QD-01	CIDEB	ENST00000554411.1,ENST00000258807.5,ENST00000336557.5	chr14	24774811:24774971:24775152:24775343:24775579:24775667,	24775153	24775343	24775181	24775181	Nonsense_Mutation	G	A	p.Q167*
CESC	TCGA-C5-A7UH-01	CIRBP	ENST00000590704.1,ENST00000589710.1,ENST00000589686.1	chr19	1269354:1269409:1270865:1271035:1271138:1271245,	1270866	1271035	1271012	1271012	Nonsense_Mutation	C	T	p.Q10*
CESC	TCGA-C5-A7UH-01	CIRBP	ENST00000587169.1,ENST00000593048.1,ENST00000444172.2,ENST00000591376.1,ENST00000592412.1	chr19	1269354:1269409:1270926:1271035:1271138:1271245,1269354:1269409:1270926:1271035:1271327:1271360,	1270927	1271035	1271012	1271012	Nonsense_Mutation	C	T	p.Q10*
CESC	TCGA-DS-A7WH-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122773035:122773088:122794308:122794429:122801295:122801402,	122794309	122794429	122794404	122794404	Nonsense_Mutation	G	A	p.Q1167*
CESC	TCGA-EA-A3HT-01	CLTCL1	ENST00000263200.10,ENST00000505027.2,ENST00000413132.2,ENST00000427926.1,ENST00000353891.5	chr22	19211413:19211577:19212975:19213156:19213741:19213843,	19212976	19213156	19213066	19213066	Nonsense_Mutation	G	A	p.Q680*
CESC	TCGA-FU-A5XV-01	CNTLN	ENST00000262360.5,ENST00000425824.1,ENST00000380647.3	chr9	17298191:17298350:17309055:17309250:17330629:17330806,	17309056	17309250	17309221	17309221	Nonsense_Mutation	C	T	p.Q438*
CESC	TCGA-Q1-A73O-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474021	103474021	Nonsense_Mutation	G	A	p.Q573*
CESC	TCGA-UC-A7PF-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46924329:46924470:46925047:46925192:46925271:46925345,	46925048	46925192	46925096	46925096	Nonsense_Mutation	C	T	p.Q1388*
CESC	TCGA-C5-A1BF-01	COL4A3BP	ENST00000357457.4,ENST00000405807.4,ENST00000508692.1,ENST00000261415.7,ENST00000380494.5	chr5	74676969:74677026:74677773:74677902:74680466:74680537,	74677774	74677902	74677813	74677813	Nonsense_Mutation	C	T	p.W654*
CESC	TCGA-C5-A2LZ-01	COL9A3	ENST00000343916.3,ENST00000466192.1	chr20	61467272:61467305:61467538:61467685:61467829:61467884,	61467539	61467685	61467602	61467602	Nonsense_Mutation	C	T	p.Q489*
CESC	TCGA-IR-A3LA-01	COL9A3	ENST00000343916.3,ENST00000466192.1	chr20	61467272:61467305:61467538:61467685:61467829:61467884,	61467539	61467685	61467602	61467602	Nonsense_Mutation	C	T	p.Q489*
CESC	TCGA-UC-A7PF-01	COX10	ENST00000537334.1,ENST00000261643.3,ENST00000580561.1	chr17	14005434:14005559:14063193:14063264:14095305:14095538,	14063194	14063264	14063216	14063216	Nonsense_Mutation	C	G	p.S216*
CESC	TCGA-C5-A1MK-01	COX4I2	ENST00000490030.1	chr20	30225735:30225765:30226820:30226902:30227735:30227893,	30226821	30226902	30226891	30226891	Nonsense_Mutation	C	G	p.S24*
CESC	TCGA-EA-A3QD-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131388518:131388608:131404718:131404802:131415385:131415460,	131404719	131404802	131404727	131404727	Nonsense_Mutation	G	A	p.R213*
CESC	TCGA-FU-A2QG-01	CPSF2	ENST00000298875.4,ENST00000555244.1	chr14	92624002:92624228:92625326:92625626:92627455:92627590,	92625327	92625626	92625343	92625343	Nonsense_Mutation	C	G	p.S613*
CESC	TCGA-EK-A3GK-01	CRLF3	ENST00000583527.1	chr17	29100424:29100515:29111324:29111461:29112936:29113011,	29111325	29111461	29111327	29111327	Nonsense_Mutation	G	A	p.R403*
CESC	TCGA-EK-A3GN-01	CSMD3	ENST00000343508.3,ENST00000297405.5,ENST00000339701.3,ENST00000352409.3	chr8	113314021:113314195:113316949:113317144:113318235:113318421,	113316950	113317144	113317096	113317096	Nonsense_Mutation	C	T	p.W2707*
CESC	TCGA-EK-A2RA-01	CSTF1	ENST00000493039.1,ENST00000217109.4	chr20	54972699:54972897:54974022:54974413:54978523:54979518,	54974023	54974413	54974255	54974255	Nonsense_Mutation	C	G	p.S293*
CESC	TCGA-EA-A3QD-01	CYTIP	ENST00000439355.1	chr2	158291220:158291259:158300358:158300518:158321447:158321539,158291220:158291259:158300358:158300518:158343843:158343946,	158300359	158300518	158300367	158300367	Nonsense_Mutation	G	A	p.R56*
CESC	TCGA-FU-A3YQ-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000382111.2,ENST00000433147.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32241003:32241223:32242819:32242953:32253430:32253539,	32242820	32242953	32242914	32242914	Nonsense_Mutation	C	A	p.S1039*
CESC	TCGA-DS-A0VL-01	DERL1	ENST00000405944.3	chr8	124037225:124037290:124042844:124042956:124054209:124054362,	124042845	124042956	124042857	124042857	Nonsense_Mutation	G	A	p.R85*
CESC	TCGA-EA-A5ZF-01	DGKI	ENST00000453654.2,ENST00000446122.1,ENST00000424189.2,ENST00000288490.5	chr7	137270006:137270092:137271842:137271956:137282592:137282653,	137271843	137271956	137271863	137271863	Nonsense_Mutation	G	A	p.R469*
CESC	TCGA-C5-A1M7-01	DHRS12	ENST00000280056.2	chr13	52343291:52343429:52345956:52346047:52348065:52348170,52344919:52345631:52345956:52346047:52348065:52348170,	52345957	52346047	52346018	52346018	Nonsense_Mutation	C	T	p.W215*
CESC	TCGA-EA-A411-01	DHRS3	ENST00000376223.2	chr1	12628420:12628453:12632755:12632881:12640550:12640694,12628420:12628453:12632755:12632881:12638745:12638984,	12632756	12632881	12632817	12632817	Nonsense_Mutation	G	A	p.Q255*
CESC	TCGA-JW-A5VJ-01	DHTKD1	ENST00000263035.4	chr10	12154898:12155063:12159671:12159754:12160747:12160917,	12159672	12159754	12159690	12159690	Nonsense_Mutation	C	T	p.Q780*
CESC	TCGA-EA-A3HR-01	DHX36	ENST00000481941.1,ENST00000496811.1,ENST00000544526.1,ENST00000329463.5,ENST00000308361.6	chr3	154018382:154018485:154018775:154018916:154021117:154021199,	154018776	154018916	154018864	154018864	Nonsense_Mutation	G	A	p.Q424*
CESC	TCGA-C5-A2LZ-01	DIAPH3	ENST00000498416.1,ENST00000400319.1,ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4,ENST00000400320.1,ENST00000465066.1	chr13	60435540:60435670:60453362:60453602:60485868:60485970,	60453363	60453602	60453398	60453398	Nonsense_Mutation	G	A	p.Q858*
CESC	TCGA-DG-A2KM-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13356682	13356682	Nonsense_Mutation	G	C	p.S300*
CESC	TCGA-EK-A3GJ-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225266908:225267250:225268080:225268450:225270250:225270441,	225268081	225268450	225268222	225268222	Nonsense_Mutation	C	T	p.Q970*
CESC	TCGA-DG-A2KL-01	DPP3	ENST00000541961.1,ENST00000530165.1,ENST00000360510.2,ENST00000532677.1,ENST00000531863.1,ENST00000453114.1	chr11	66263100:66263221:66264768:66264948:66272082:66272245,	66264769	66264948	66264946	66264946	Nonsense_Mutation	C	T	p.Q626*
CESC	TCGA-Q1-A6DW-01	DPP8	ENST00000300141.6,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6	chr15	65759015:65759151:65759408:65759561:65766546:65766626,	65759409	65759561	65759487	65759487	Nonsense_Mutation	G	C	p.Y553*
CESC	TCGA-Q1-A5R2-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471441	56471441	Nonsense_Mutation	G	C	p.S2629*
CESC	TCGA-EK-A2RD-01	DYNC1I2	ENST00000409773.1,ENST00000397119.3,ENST00000409453.1,ENST00000452242.1,ENST00000438879.1,ENST00000422646.1,ENST00000534253.2,ENST00000482454.1,ENST00000263811.4,ENST00000443458.1,ENST00000409317.1,ENST00000411953.1	chr2	172563796:172563887:172569276:172569336:172571837:172571860,	172569277	172569336	172569311	172569311	Nonsense_Mutation	C	T	p.Q124*
CESC	TCGA-FU-A5XV-01	E2F7	ENST00000322886.7,ENST00000416496.2,ENST00000550669.1	chr12	77427785:77427822:77436844:77436979:77438416:77438575,	77436845	77436979	77436899	77436899	Nonsense_Mutation	G	A	p.R357*
CESC	TCGA-EK-A2PM-01	ECT2	ENST00000437296.1,ENST00000486027.1	chr3	172534488:172534627:172536337:172536604:172537937:172538027,	172536338	172536604	172536477	172536477	Nonsense_Mutation	C	G	p.S901*
CESC	TCGA-LP-A7HU-01	EHMT1	ENST00000495657.1	chr9	140611546:140611634:140622800:140622981:140637822:140637980,140611546:140611634:140622800:140622981:140637843:140637980,	140622801	140622981	140622861	140622861	Nonsense_Mutation	G	T	p.E235*
CESC	TCGA-IR-A3LL-01	EIF4A2	ENST00000498746.1,ENST00000323963.5,ENST00000425053.1,ENST00000440191.2	chr3	186502352:186502485:186502750:186502890:186503671:186503702,	186502751	186502890	186502834	186502834	Nonsense_Mutation	G	T	p.E99*
CESC	TCGA-C5-A3HE-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981105	201981105	Nonsense_Mutation	G	T	p.E62*
CESC	TCGA-IR-A3LI-01	ELMO1	ENST00000448602.1,ENST00000310758.4,ENST00000455879.1,ENST00000442504.1,ENST00000455119.1	chr7	37298785:37298955:37311436:37311487:37354453:37354526,	37311437	37311487	37311454	37311454	Nonsense_Mutation	G	A	p.R76*
CESC	TCGA-FU-A3YQ-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000350494.6,ENST00000542824.1,ENST00000545302.1,ENST00000541748.1,ENST00000351393.6,ENST00000358232.6,ENST00000540766.1,ENST00000442325.2	chr18	33747118:33747185:33750025:33750159:33751009:33751123,	33750026	33750159	33750155	33750155	Nonsense_Mutation	C	T	p.Q736*
CESC	TCGA-EK-A2H0-01	ERCC6L2	ENST00000288985.7	chr9	98660130:98660253:98669359:98669553:98677949:98678111,	98669360	98669553	98669408	98669408	Nonsense_Mutation	G	T	p.E37*
CESC	TCGA-JW-A5VL-01	ERCC8	ENST00000543101.1,ENST00000426742.2,ENST00000381118.3,ENST00000265038.5	chr5	60183266:60183347:60186715:60186913:60194102:60194227,	60186716	60186913	60186718	60186718	Nonsense_Mutation	G	A	p.Q347*
CESC	TCGA-C5-A1MN-01	ESRP2	ENST00000473183.2,ENST00000565858.1	chr16	68266148:68266191:68266273:68266406:68266479:68266590,	68266274	68266406	68266312	68266312	Nonsense_Mutation	G	A	p.Q316*
CESC	TCGA-C5-A1MQ-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5617148:5617271:5620204:5620409:5624263:5624718,	5620205	5620409	5620291	5620291	Nonsense_Mutation	G	A	p.R874*
CESC	TCGA-EK-A3GJ-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170627053	170627053	Nonsense_Mutation	C	A	p.S215*
CESC	TCGA-C5-A2M1-01	FAM13B	ENST00000425075.2,ENST00000033079.3,ENST00000420893.2	chr5	137320945:137321078:137323149:137323305:137323962:137324004,	137323150	137323305	137323274	137323274	Nonsense_Mutation	C	A	p.E308*
CESC	TCGA-EK-A2R8-01	FAM189A1	ENST00000560021.1,ENST00000261275.4	chr15	29429236:29429397:29443936:29444044:29488633:29488768,	29443937	29444044	29443942	29443942	Nonsense_Mutation	G	A	p.Q209*
CESC	TCGA-Q1-A6DW-01	FAM208A	ENST00000431842.2	chr3	56662519:56662642:56667071:56667871:56672733:56672793,	56667072	56667871	56667374	56667374	Nonsense_Mutation	C	A	p.E1088*
CESC	TCGA-Q1-A6DW-01	FAM208A	ENST00000493960.2	chr3	56662519:56662642:56667071:56667994:56672733:56672793,	56667072	56667994	56667374	56667374	Nonsense_Mutation	C	A	p.E1088*
CESC	TCGA-EA-A1QS-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540391	187540391	Nonsense_Mutation	G	C	p.S2450*
CESC	TCGA-LP-A4AW-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542656	187542656	Nonsense_Mutation	G	C	p.S1695*
CESC	TCGA-EK-A2RK-01	FBXL20	ENST00000577399.1	chr17	37459837:37459892:37499432:37499494:37557613:37557876,37459837:37459892:37499432:37499494:37558425:37558776,	37499433	37499494	37499487	37499487	Nonsense_Mutation	G	C	p.S17*
CESC	TCGA-EK-A2R8-01	FBXO22	ENST00000453211.2,ENST00000540507.1,ENST00000569022.1,ENST00000308275.3,ENST00000561885.1,ENST00000569054.1	chr15	76196831:76196970:76209570:76209735:76222224:76222390,76206454:76206546:76209570:76209735:76222224:76222390,	76209571	76209735	76209603	76209603	Nonsense_Mutation	C	T	p.Q166*
CESC	TCGA-C5-A7UH-01	FBXW4	ENST00000331272.7,ENST00000457105.2	chr10	103384503:103384567:103427642:103427737:103432671:103432804,	103427643	103427737	103427677	103427677	Nonsense_Mutation	G	A	p.R246*
CESC	TCGA-EA-A556-01	FLNB	ENST00000429972.2,ENST00000419752.2	chr3	58124008:58124256:58127584:58127623:58128376:58128479,	58127585	58127623	58127612	58127612	Nonsense_Mutation	G	T	p.E1713*
CESC	TCGA-EA-A556-01	FLNB	ENST00000357272.4,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1	chr3	58124008:58124256:58127584:58127656:58128376:58128479,	58127585	58127656	58127612	58127612	Nonsense_Mutation	G	T	p.E1713*
CESC	TCGA-C5-A1ML-01	FLT4	ENST00000261937.6,ENST00000424276.2,ENST00000502649.1,ENST00000393347.3	chr5	180055927:180055999:180056258:180056427:180056695:180056835,	180056259	180056427	180056292	180056292	Nonsense_Mutation	G	A	p.R318*
CESC	TCGA-JW-A5VL-01	FMO5	ENST00000441068.2,ENST00000254090.4	chr1	146661755:146661828:146672733:146673086:146680413:146680613,	146672734	146673086	146672800	146672800	Nonsense_Mutation	G	A	p.Q373*
CESC	TCGA-JW-A5VL-01	FMO5	ENST00000527849.1	chr1	146661755:146661828:146672733:146672925:146680413:146680613,	146672734	146672925	146672800	146672800	Nonsense_Mutation	G	A	p.Q373*
CESC	TCGA-EK-A2R8-01	FNBP1	ENST00000449089.2,ENST00000478129.1,ENST00000355681.3,ENST00000446176.2,ENST00000420781.1,ENST00000443566.2	chr9	132662704:132662826:132665147:132665280:132671168:132671278,	132665148	132665280	132665171	132665171	Nonsense_Mutation	G	A	p.R469*
CESC	TCGA-R2-A69V-01	GAA	ENST00000572803.1,ENST00000302262.3,ENST00000390015.3	chr17	78085781:78085899:78086376:78086510:78086674:78086747,	78086377	78086510	78086486	78086486	Nonsense_Mutation	G	T	p.E622*
CESC	TCGA-LP-A4AU-01	GABPB2	ENST00000368918.3,ENST00000489549.1	chr1	151070327:151070478:151076037:151076151:151079512:151079653,	151076038	151076151	151076068	151076068	Nonsense_Mutation	C	G	p.S218*
CESC	TCGA-C5-A1MN-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62397285:62397429:62397668:62397748:62397850:62397977,	62397669	62397748	62397703	62397703	Nonsense_Mutation	C	T	p.W542*
CESC	TCGA-C5-A7CK-01	GGT5	ENST00000327365.4,ENST00000425408.1,ENST00000263112.7	chr22	24621212:24621379:24621513:24621620:24622043:24622080,	24621514	24621620	24621550	24621550	Nonsense_Mutation	G	A	p.R434*
CESC	TCGA-DR-A0ZL-01	GK	ENST00000378943.3,ENST00000378946.3,ENST00000378941.3,ENST00000378945.3	chrX	30683627:30683701:30686128:30686235:30695491:30695565,	30686129	30686235	30686131	30686131	Nonsense_Mutation	G	A	p.W52*
CESC	TCGA-C5-A1MK-01	GK5	ENST00000492097.1,ENST00000392993.2,ENST00000460544.1,ENST00000480757.1,ENST00000544571.1	chr3	141906545:141906621:141917643:141917775:141923536:141923630,	141917644	141917775	141917646	141917646	Nonsense_Mutation	C	A	p.E181*
CESC	TCGA-C5-A1BJ-01	GLE1	ENST00000372770.4,ENST00000539582.1	chr9	131267084:131267183:131271154:131271376:131277807:131277918,	131271155	131271376	131271285	131271285	Nonsense_Mutation	C	G	p.S77*
CESC	TCGA-EX-A1H6-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735537	155735537	Nonsense_Mutation	G	A	p.Q1243*
CESC	TCGA-C5-A1ML-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000437809.1,ENST00000482386.1,ENST00000361040.5,ENST00000271883.5	chr1	155747412:155747611:155753776:155753880:155755124:155755165,	155753777	155753880	155753850	155753850	Nonsense_Mutation	C	A	p.E607*
CESC	TCGA-EK-A2RO-01	GRID2	ENST00000282020.4,ENST00000505687.1	chr4	93511281:93511437:94006145:94006430:94031898:94032104,	94006146	94006430	94006335	94006335	Nonsense_Mutation	C	G	p.S145*
CESC	TCGA-Q1-A6DW-01	GSR	ENST00000221130.5,ENST00000541648.1,ENST00000546342.1,ENST00000537535.1,ENST00000414019.1	chr8	30538420:30538554:30539446:30539578:30541604:30541716,	30539447	30539578	30539546	30539546	Nonsense_Mutation	G	A	p.R396*
CESC	TCGA-EK-A2R8-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19080476:19080670:19082870:19083041:19086731:19086780,	19082871	19083041	19082873	19082873	Nonsense_Mutation	G	A	p.Q290*
CESC	TCGA-IR-A3LF-01	HCFC2	ENST00000229330.4,ENST00000544223.2	chr12	104473222:104473431:104474523:104474608:104476277:104476384,	104474524	104474608	104474574	104474574	Nonsense_Mutation	C	T	p.R245*
CESC	TCGA-EK-A2R7-01	HEATR5A	ENST00000439727.1,ENST00000543095.2,ENST00000389961.3	chr14	31765114:31765269:31774110:31774383:31775937:31776085,31771500:31771725:31774110:31774383:31775937:31776016,	31774111	31774383	31774366	31774366	Nonsense_Mutation	C	A	p.E1656*
CESC	TCGA-C5-A7UH-01	HECTD3	ENST00000372168.3,ENST00000486296.1,ENST00000372172.4	chr1	45470271:45470478:45471465:45471555:45471668:45471788,	45471466	45471555	45471529	45471529	Nonsense_Mutation	C	T	p.W624*
CESC	TCGA-EK-A2H0-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048469	42048469	Nonsense_Mutation	G	C	p.S667*
CESC	TCGA-DR-A0ZM-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910587	29910587	Nonsense_Mutation	G	T	p.E43*
CESC	TCGA-JW-A5VL-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910744	29910744	Nonsense_Mutation	C	G	p.S95*
CESC	TCGA-C5-A1BF-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910797	29910797	Nonsense_Mutation	G	T	p.E113*
CESC	TCGA-C5-A1BQ-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910797	29910797	Nonsense_Mutation	G	T	p.E113*
CESC	TCGA-Q1-A73O-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911302	29911302	Nonsense_Mutation	G	T	p.E201*
CESC	TCGA-JW-A5VL-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324477	31324477	Nonsense_Mutation	G	A	p.Q111*
CESC	TCGA-JW-A5VL-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324477	31324477	Nonsense_Mutation	G	A	p.Q111*
CESC	TCGA-JX-A3Q0-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324681	31324681	Nonsense_Mutation	C	A	p.E43*
CESC	TCGA-JX-A3Q0-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324681	31324681	Nonsense_Mutation	C	A	p.E43*
CESC	TCGA-C5-A1BF-01	HSD17B4	ENST00000513628.1,ENST00000515235.2,ENST00000442060.3,ENST00000510025.1,ENST00000509514.1,ENST00000522415.1,ENST00000256216.6,ENST00000504811.1,ENST00000414835.2,ENST00000515320.1,ENST00000509606.1	chr5	118865595:118865675:118866960:118867099:118872117:118872245,	118866961	118867099	118866973	118866973	Nonsense_Mutation	C	T	p.Q623*
CESC	TCGA-FU-A23K-01	IARS2	ENST00000302637.5	chr1	220267454:220267825:220269445:220269568:220273831:220273991,	220269446	220269568	220269459	220269459	Nonsense_Mutation	C	A	p.S94*
CESC	TCGA-C5-A1M7-01	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040354	103040354	Nonsense_Mutation	C	T	p.Q52*
CESC	TCGA-Q1-A5R2-01	INPP5J	ENST00000331075.5	chr22	31520127:31520249:31520830:31521996:31522361:31522475,31518979:31519105:31520830:31521996:31522361:31522475,	31520831	31521996	31521299	31521299	Nonsense_Mutation	G	T	p.E192*
CESC	TCGA-C5-A7CJ-01	ISPD	ENST00000407010.2,ENST00000399310.3	chr7	16130816:16131424:16255690:16255822:16298014:16298107,	16255691	16255822	16255786	16255786	Nonsense_Mutation	G	A	p.Q386*
CESC	TCGA-C5-A1BJ-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31277350:31277468:31282274:31282405:31283167:31283313,	31282275	31282405	31282368	31282368	Nonsense_Mutation	C	G	p.S174*
CESC	TCGA-C5-A1BF-01	ITGAX	ENST00000571644.1,ENST00000268296.4,ENST00000562522.1	chr16	31382404:31382535:31382654:31382818:31382950:31383105,	31382655	31382818	31382737	31382737	Nonsense_Mutation	C	T	p.Q642*
CESC	TCGA-EK-A2RO-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000580542.1,ENST00000339591.3,ENST00000584558.1	chr17	73726321:73726585:73726955:73727045:73727326:73727449,	73726956	73727045	73726984	73726984	Nonsense_Mutation	C	G	p.S344*
CESC	TCGA-UC-A7PF-01	JAKMIP3	ENST00000298622.4	chr10	133930580:133931078:133946815:133947031:133948544:133948664,	133946816	133947031	133946876	133946876	Nonsense_Mutation	C	T	p.Q232*
CESC	TCGA-Q1-A73O-01	KCTD20	ENST00000481911.1,ENST00000536244.1,ENST00000265344.4,ENST00000474988.1,ENST00000373731.2,ENST00000544295.1,ENST00000449081.2	chr6	36449338:36449536:36452490:36452601:36454659:36455183,	36452491	36452601	36452532	36452532	Nonsense_Mutation	G	T	p.E300*
CESC	TCGA-IR-A3LI-01	KCTD3	ENST00000259154.4	chr1	215753251:215753342:215759837:215760028:215768697:215768813,	215759838	215760028	215760001	215760001	Nonsense_Mutation	C	T	p.Q264*
CESC	TCGA-EK-A2PL-01	KDM2A	ENST00000529006.2,ENST00000398645.2	chr11	66949316:66949363:66974980:66975159:66982810:66982917,	66974981	66975159	66975046	66975046	Nonsense_Mutation	C	T	p.Q125*
CESC	TCGA-Q1-A5R1-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727777	137727777	Nonsense_Mutation	C	G	p.S819*
CESC	TCGA-EK-A2RA-01	KDM5B	ENST00000470573.1,ENST00000367265.3,ENST00000235790.4,ENST00000367264.2	chr1	202742344:202742416:202743740:202743863:202746144:202746222,	202743741	202743863	202743752	202743752	Nonsense_Mutation	G	A	p.Q132*
CESC	TCGA-FU-A40J-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26951250:26951408:26955282:26955577:26958496:26958696,	26955283	26955577	26955504	26955504	Nonsense_Mutation	C	T	p.W1458*
CESC	TCGA-EK-A2RK-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1,ENST00000580882.1	chr17	26969886:26970005:26970181:26970329:26971075:26971205,26969886:26970005:26970181:26970329:26970627:26970677,	26970182	26970329	26970293	26970293	Nonsense_Mutation	G	A	p.Q79*
CESC	TCGA-EK-A2RK-01	KIAA0100	ENST00000577417.1	chr17	26969886:26970005:26970181:26970677:26971075:26971205,	26970182	26970677	26970293	26970293	Nonsense_Mutation	G	A	p.Q79*
CESC	TCGA-Q1-A6DT-01	KLHDC4	ENST00000353170.5,ENST00000567298.1,ENST00000562261.1,ENST00000270583.5,ENST00000316853.6,ENST00000566661.1,ENST00000562155.1	chr16	87760504:87760530:87764157:87764250:87782278:87782415,	87764158	87764250	87764168	87764168	Nonsense_Mutation	C	A	p.E197*
CESC	TCGA-EK-A3GJ-01	KLHDC8B	ENST00000332780.2	chr3	49212365:49212399:49212494:49212596:49213037:49213835,	49212495	49212596	49212502	49212502	Nonsense_Mutation	G	A	p.W258*
CESC	TCGA-EK-A2R9-01	KLHL18	ENST00000455924.2,ENST00000442272.1	chr3	47324448:47324584:47364057:47364198:47371440:47371639,	47364058	47364198	47364191	47364191	Nonsense_Mutation	C	T	p.R132*
CESC	TCGA-C5-A1BQ-01	KLRD1	ENST00000381908.3	chr12	10462224:10462287:10464062:10464214:10466005:10466112,	10464063	10464214	10464197	10464197	Nonsense_Mutation	C	T	p.Q100*
CESC	TCGA-JX-A3PZ-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000416613.1,ENST00000395314.3,ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56103166:56103254:56103915:56104082:56104496:56104565,	56103916	56104082	56103991	56103991	Nonsense_Mutation	C	G	p.S542*
CESC	TCGA-DG-A2KL-01	LARP4B	ENST00000316157.3	chr10	890916:890995:909682:909823:910062:910210,	909683	909823	909788	909788	Nonsense_Mutation	C	A	p.E109*
CESC	TCGA-EA-A6QX-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005408	150005408	Nonsense_Mutation	G	A	p.Q273*
CESC	TCGA-EK-A2H0-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005605	150005605	Nonsense_Mutation	G	C	p.S207*
CESC	TCGA-Q1-A5R2-01	LATS1	ENST00000542747.1,ENST00000543571.1,ENST00000392273.3,ENST00000253339.5	chr6	150005539:150005728:150016209:150016357:150022914:150023099,	150016210	150016357	150016267	150016267	Nonsense_Mutation	G	A	p.R147*
CESC	TCGA-EK-A3GJ-01	LEKR1	ENST00000483177.1	chr3	156547074:156547166:156570556:156570771:156638363:156638483,156547074:156547166:156570556:156570771:156606085:156606258,	156570557	156570771	156570671	156570671	Nonsense_Mutation	C	T	p.Q55*
CESC	TCGA-JW-A5VL-01	LEPR	ENST00000344610.8,ENST00000406510.3,ENST00000462765.1,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66031228:66031288:66036155:66036485:66038008:66038132,	66036156	66036485	66036336	66036336	Nonsense_Mutation	C	G	p.S74*
CESC	TCGA-IR-A3LI-01	LGALS3BP	ENST00000591778.1	chr17	76969269:76969304:76970769:76970901:76972046:76972238,76969269:76969304:76970769:76970901:76973221:76973296,76968638:76968786:76970769:76970901:76972046:76972238,	76970770	76970901	76970878	76970878	Nonsense_Mutation	C	A	p.E90*
CESC	TCGA-EK-A2PG-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76393528:76393671:76395312:76395745:76397700:76398009,	76395313	76395745	76395533	76395533	Nonsense_Mutation	C	T	p.Q862*
CESC	TCGA-EK-A3GK-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76393528:76393671:76395312:76395745:76397700:76398009,	76395313	76395745	76395627	76395627	Nonsense_Mutation	C	G	p.S893*
CESC	TCGA-C5-A1MH-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944340	235944340	Nonsense_Mutation	G	C	p.S1680*
CESC	TCGA-JW-A5VJ-01	MAGEA11	ENST00000355220.5	chrX	148793737:148793822:148794802:148794915:148796140:148796236,	148794803	148794915	148794829	148794829	Nonsense_Mutation	C	T	p.Q4*
CESC	TCGA-EK-A2PM-01	MBD4	ENST00000509828.1,ENST00000429544.2,ENST00000393278.2,ENST00000249910.1	chr3	129150328:129150421:129151345:129151449:129151940:129152090,	129151346	129151449	129151414	129151414	Nonsense_Mutation	C	A	p.E533*
CESC	TCGA-EK-A2PM-01	MBD4	ENST00000503197.1	chr3	129150328:129150421:129151398:129151449:129151940:129152090,	129151399	129151449	129151414	129151414	Nonsense_Mutation	C	A	p.E533*
CESC	TCGA-JW-A5VL-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919806	57919806	Nonsense_Mutation	C	G	p.S352*
CESC	TCGA-C5-A1BM-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921757	57921757	Nonsense_Mutation	C	G	p.S788*
CESC	TCGA-Q1-A73P-01	MBNL1	ENST00000324210.5,ENST00000282486.6,ENST00000282488.7,ENST00000355460.2	chr3	151986751:151986881:152017193:152018156:152132729:152132897,	152017194	152018156	152018043	152018043	Nonsense_Mutation	G	T	p.E21*
CESC	TCGA-C5-A1BJ-01	MCOLN1	ENST00000264079.6,ENST00000394321.5	chr19	7593043:7593143:7593482:7593589:7593706:7593856,	7593483	7593589	7593569	7593569	Nonsense_Mutation	C	T	p.R322*
CESC	TCGA-Q1-A73P-01	MED13	ENST00000397786.2	chr17	60033699:60033842:60038227:60038451:60038948:60039140,	60038228	60038451	60038436	60038436	Nonsense_Mutation	G	A	p.R1758*
CESC	TCGA-BI-A0VR-01	MED31	ENST00000575197.1	chr17	6547614:6547979:6553675:6553753:6554820:6554895,	6553676	6553753	6553727	6553727	Nonsense_Mutation	G	A	p.Q19*
CESC	TCGA-EK-A3GJ-01	MEOX1	ENST00000393661.2	chr17	41719281:41719400:41720855:41721028:41738433:41738761,	41720856	41721028	41720864	41720864	Nonsense_Mutation	C	A	p.E212*
CESC	TCGA-MU-A5YI-01	METTL8	ENST00000375258.4,ENST00000483284.1,ENST00000438609.1,ENST00000460188.1	chr2	172182350:172182416:172182551:172182658:172187068:172187126,	172182552	172182658	172182597	172182597	Nonsense_Mutation	G	A	p.R308*
CESC	TCGA-EK-A2PM-01	METTL9	ENST00000567404.1,ENST00000396014.4,ENST00000358154.3,ENST00000562961.1	chr16	21610912:21611219:21629185:21629395:21636251:21636435,21624020:21624156:21629185:21629395:21636251:21636435,	21629186	21629395	21629232	21629232	Nonsense_Mutation	C	T	p.Q135*
CESC	TCGA-LP-A5U3-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961606	41961606	Nonsense_Mutation	C	T	p.Q172*
CESC	TCGA-UC-A7PF-01	MMS22L	ENST00000369251.2,ENST00000508976.1,ENST00000275053.4,ENST00000509383.1	chr6	97702432:97702609:97711210:97711324:97715747:97715878,	97711211	97711324	97711270	97711270	Nonsense_Mutation	C	A	p.E295*
CESC	TCGA-IR-A3LI-01	MPP1	ENST00000369531.1	chrX	154020043:154020122:154020467:154020560:154033546:154033672,	154020468	154020560	154020470	154020470	Nonsense_Mutation	C	A	p.E65*
CESC	TCGA-IR-A3LI-01	MPP1	ENST00000471821.1,ENST00000393531.1	chrX	154020043:154020122:154020416:154020560:154033546:154033672,	154020417	154020560	154020470	154020470	Nonsense_Mutation	C	A	p.E65*
CESC	TCGA-HM-A3JK-01	MRPL22	ENST00000522038.1	chr5	154320776:154320825:154330362:154330498:154335930:154335996,	154330363	154330498	154330430	154330430	Nonsense_Mutation	C	T	p.R43*
CESC	TCGA-HM-A3JK-01	MRPL22	ENST00000439747.3,ENST00000523037.1	chr5	154320776:154320825:154330380:154330498:154335930:154335996,	154330381	154330498	154330430	154330430	Nonsense_Mutation	C	T	p.R43*
CESC	TCGA-EA-A3Y4-01	MTMR1	ENST00000485376.1,ENST00000538506.1,ENST00000488357.1	chrX	149919263:149919315:149919501:149919712:149924160:149924337,	149919502	149919712	149919523	149919523	Nonsense_Mutation	C	T	p.R560*
CESC	TCGA-C5-A1BL-01	MTMR1	ENST00000370390.3,ENST00000485376.1	chrX	149924160:149924337:149931037:149931210:149932984:149933397,	149931038	149931210	149931144	149931144	Nonsense_Mutation	C	A	p.S655*
CESC	TCGA-Q1-A73O-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508585	195508585	Nonsense_Mutation	G	C	p.S3289*
CESC	TCGA-JW-A5VL-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195509548	195509548	Nonsense_Mutation	G	C	p.S2968*
CESC	TCGA-IR-A3LK-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510796	195510796	Nonsense_Mutation	G	T	p.S2552*
CESC	TCGA-IR-A3LK-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195511420	195511420	Nonsense_Mutation	G	C	p.S2344*
CESC	TCGA-LP-A4AV-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195511900	195511900	Nonsense_Mutation	G	C	p.S2184*
CESC	TCGA-EK-A3GJ-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512140	195512140	Nonsense_Mutation	G	C	p.S2104*
CESC	TCGA-EK-A3GJ-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512284	195512284	Nonsense_Mutation	G	C	p.S2056*
CESC	TCGA-EK-A3GJ-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512318	195512318	Nonsense_Mutation	G	A	p.Q2045*
CESC	TCGA-RA-A741-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512956	195512956	Nonsense_Mutation	G	T	p.S1832*
CESC	TCGA-IR-A3LA-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268333	1268333	Nonsense_Mutation	C	G	p.S3411*
CESC	TCGA-EA-A3HR-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1272203	1272203	Nonsense_Mutation	C	G	p.S4701*
CESC	TCGA-EA-A5ZF-01	NAGS	ENST00000589767.1,ENST00000293404.3	chr17	42083415:42083605:42083896:42084077:42084690:42084862,	42083897	42084077	42084059	42084059	Nonsense_Mutation	G	T	p.E360*
CESC	TCGA-C5-A1MK-01	NBEAL1	ENST00000414576.2,ENST00000434469.1,ENST00000449802.1	chr2	204073359:204073476:204073883:204074045:204075680:204075829,	204073884	204074045	204073911	204073911	Nonsense_Mutation	C	T	p.Q2522*
CESC	TCGA-C5-A1BL-01	NFE2L2	ENST00000464747.1,ENST00000586532.1,ENST00000397062.3,ENST00000397063.4,ENST00000421929.1,ENST00000448782.1	chr2	178096578:178096736:178097119:178097311:178097977:178098067,	178097120	178097311	178097218	178097218	Nonsense_Mutation	C	A	p.E166*
CESC	TCGA-C5-A1BL-01	NFE2L2	ENST00000446151.2	chr2	178096578:178096736:178097119:178097290:178097977:178098067,	178097120	178097290	178097218	178097218	Nonsense_Mutation	C	A	p.E166*
CESC	TCGA-JW-A5VL-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17744156	17744156	Nonsense_Mutation	C	T	p.Q623*
CESC	TCGA-DG-A2KK-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745123	17745123	Nonsense_Mutation	C	G	p.S945*
CESC	TCGA-EK-A2R8-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17746202	17746202	Nonsense_Mutation	C	T	p.Q1305*
CESC	TCGA-EA-A5ZD-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15298691:15298805:15299045:15299159:15299799:15299985,	15299046	15299159	15299079	15299079	Nonsense_Mutation	G	A	p.R487*
CESC	TCGA-Q1-A6DW-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15298691:15298805:15299045:15299159:15299799:15299985,	15299046	15299159	15299118	15299118	Nonsense_Mutation	G	A	p.Q474*
CESC	TCGA-EK-A2RC-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176683951:176684152:176686989:176687169:176694562:176694719,	176686990	176687169	176687059	176687059	Nonsense_Mutation	C	A	p.S1679*
CESC	TCGA-EA-A1QT-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176683951:176684152:176686989:176687169:176694562:176694719,	176686990	176687169	176687059	176687059	Nonsense_Mutation	C	G	p.S1679*
CESC	TCGA-C5-A1ME-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96059585:96059756:96063853:96063922:96076482:96076590,	96063854	96063922	96063914	96063914	Nonsense_Mutation	C	A	p.E507*
CESC	TCGA-EK-A3GK-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2	chr5	37337919:37338020:37341191:37341344:37342650:37342748,	37341192	37341344	37341221	37341221	Nonsense_Mutation	G	C	p.S406*
CESC	TCGA-FU-A23L-01	NUP54	ENST00000458189.2,ENST00000512151.1,ENST00000264883.3,ENST00000502850.1,ENST00000514987.1	chr4	77045801:77045909:77051808:77051902:77052382:77052437,	77051809	77051902	77051823	77051823	Nonsense_Mutation	G	A	p.Q348*
CESC	TCGA-UC-A7PF-01	OPA1	ENST00000419435.1	chr3	193311140:193311198:193332511:193332830:193333462:193333559,193321288:193321346:193332511:193332830:193333462:193333559,	193332512	193332830	193332657	193332657	Nonsense_Mutation	C	T	p.Q60*
CESC	TCGA-EK-A2RJ-01	P2RX2	ENST00000350048.5,ENST00000449132.2	chr12	133195426:133195575:133196024:133196160:133196429:133196505,	133196025	133196160	133196044	133196044	Nonsense_Mutation	A	T	p.K65*
CESC	TCGA-C5-A2LZ-01	PADI2	ENST00000444885.2	chr1	17413015:17413194:17422403:17422465:17429481:17429554,	17422404	17422465	17422424	17422424	Nonsense_Mutation	C	A	p.E131*
CESC	TCGA-UC-A7PF-01	PAN3	ENST00000503791.1,ENST00000380958.3	chr13	28752001:28752072:28794367:28794515:28830428:28830676,28771321:28771483:28794367:28794515:28830428:28830676,	28794368	28794515	28794441	28794441	Nonsense_Mutation	C	G	p.S309*
CESC	TCGA-EK-A2R8-01	PAPOLA	ENST00000556787.1,ENST00000392990.2,ENST00000555626.1,ENST00000554666.1,ENST00000216277.8,ENST00000553689.1	chr14	97008579:97008633:97009110:97009230:97010485:97010595,	97009111	97009230	97009200	97009200	Nonsense_Mutation	C	G	p.S420*
CESC	TCGA-EK-A2RJ-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418794	122418794	Nonsense_Mutation	C	T	p.Q465*
CESC	TCGA-MU-A5YI-01	PAWR	ENST00000328827.4,ENST00000551712.1	chr12	80007354:80007389:80014855:80014987:80083508:80083810,	80014856	80014987	80014939	80014939	Nonsense_Mutation	G	A	p.R189*
CESC	TCGA-EK-A2RA-01	PAX8	ENST00000348715.5,ENST00000263334.5	chr2	113984731:113984833:113992970:113993080:113994177:113994269,	113992971	113993080	113992973	113992973	Nonsense_Mutation	G	C	p.S362*
CESC	TCGA-EK-A2RA-01	PAX8	ENST00000497038.2,ENST00000485840.1,ENST00000429538.3	chr2	113984731:113984833:113992970:113993159:113994177:113994269,	113992971	113993159	113992973	113992973	Nonsense_Mutation	G	C	p.S362*
CESC	TCGA-Q1-A5R2-01	PCDH15	ENST00000463095.1,ENST00000320301.6,ENST00000448885.1,ENST00000437009.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55616934:55617023:55626401:55626617:55663002:55663130,	55626402	55626617	55626458	55626458	Nonsense_Mutation	G	A	p.Q1221*
CESC	TCGA-EK-A2PL-01	PCNA	ENST00000379143.5,ENST00000379160.3	chr20	5096094:5096218:5098115:5098310:5099255:5099323,	5098116	5098310	5098124	5098124	Nonsense_Mutation	C	A	p.E192*
CESC	TCGA-EA-A6QX-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47841980:47842038:47845744:47845885:47847535:47847709,	47845745	47845885	47845794	47845794	Nonsense_Mutation	C	G	p.S2410*
CESC	TCGA-MU-A51Y-01	PDE6B	ENST00000255622.6	chr4	660319:660403:661644:661795:663834:663982,660319:660403:661644:661795:663837:664571,	661645	661795	661666	661666	Nonsense_Mutation	G	T	p.E792*
CESC	TCGA-MU-A51Y-01	PDE6B	ENST00000461490.1	chr4	660319:660403:661644:661730:663834:663982,	661645	661730	661666	661666	Nonsense_Mutation	G	T	p.E792*
CESC	TCGA-BI-A0VS-01	PDGFC	ENST00000504672.1	chr4	157684241:157684358:157688924:157689028:157689113:157689142,	157688925	157689028	157688963	157688963	Nonsense_Mutation	G	A	p.Q295*
CESC	TCGA-MY-A5BD-01	PGLYRP2	ENST00000340880.4	chr19	15582700:15582911:15586348:15587419:15590121:15590246,	15586349	15587419	15587259	15587259	Nonsense_Mutation	C	T	p.W74*
CESC	TCGA-EA-A3QD-01	PI4KB	ENST00000368874.4,ENST00000368875.2,ENST00000271657.5,ENST00000529142.1,ENST00000368873.1,ENST00000368872.1,ENST00000430800.1	chr1	151276016:151276126:151278611:151278839:151280049:151280277,	151278612	151278839	151278698	151278698	Nonsense_Mutation	G	A	p.R454*
CESC	TCGA-LP-A4AV-01	PLCD3	ENST00000322765.5,ENST00000540511.1	chr17	43195661:43195859:43196181:43196410:43197691:43197821,	43196182	43196410	43196206	43196206	Nonsense_Mutation	G	A	p.Q297*
CESC	TCGA-EK-A2R8-01	PLK4	ENST00000270861.5,ENST00000514379.1,ENST00000515069.1,ENST00000513090.1,ENST00000507249.1	chr4	128813519:128813669:128814439:128814573:128814667:128814759,	128814440	128814573	128814472	128814472	Nonsense_Mutation	C	T	p.Q741*
CESC	TCGA-FU-A3TX-01	PLXNB2	ENST00000359337.4,ENST00000496720.1,ENST00000449103.1	chr22	50723001:50723094:50724228:50724330:50724418:50724527,	50724229	50724330	50724315	50724315	Nonsense_Mutation	G	A	p.Q668*
CESC	TCGA-LP-A4AV-01	PLXNB3	ENST00000361971.5	chrX	153030956:153031035:153032327:153033368:153033703:153033883,	153032328	153033368	153032607	153032607	Nonsense_Mutation	C	T	p.Q132*
CESC	TCGA-C5-A1BQ-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108154978	108154978	Nonsense_Mutation	G	A	p.Q320*
CESC	TCGA-C5-A1BQ-01	PNPLA8	ENST00000453144.1	chr7	108154587:108154737:108154879:108155891:108161919:108161965,108154725:108154737:108154879:108155891:108166472:108166564,	108154880	108155891	108154978	108154978	Nonsense_Mutation	G	A	p.Q320*
CESC	TCGA-Q1-A73P-01	POLQ	ENST00000264233.5	chr3	121187151:121187278:121190836:121191011:121192196:121192334,	121190837	121191011	121190912	121190912	Nonsense_Mutation	G	A	p.Q2215*
CESC	TCGA-FU-A5XV-01	POU6F2	ENST00000518318.2,ENST00000520104.1,ENST00000403058.1	chr7	39379240:39379614:39446198:39446339:39472675:39472882,	39446199	39446339	39446223	39446223	Nonsense_Mutation	C	T	p.Q304*
CESC	TCGA-EA-A3Y4-01	PPM1N	ENST00000396735.2,ENST00000415077.1,ENST00000451287.2,ENST00000396737.2,ENST00000401705.1,ENST00000324688.4	chr19	46003218:46003324:46003713:46003819:46005274:46005343,46003218:46003324:46003713:46003819:46003907:46003968,	46003714	46003819	46003774	46003774	Nonsense_Mutation	C	G	p.S373*
CESC	TCGA-FU-A23L-01	PPOX	ENST00000495483.1,ENST00000537829.1,ENST00000352210.5,ENST00000367999.4	chr1	161139474:161139510:161139695:161139814:161140198:161140251,	161139696	161139814	161139704	161139704	Nonsense_Mutation	G	T	p.E293*
CESC	TCGA-EK-A2RK-01	PPP1R13B	ENST00000202556.9	chr14	104220501:104220581:104223986:104224088:104245081:104245158,	104223987	104224088	104224057	104224057	Nonsense_Mutation	G	C	p.S129*
CESC	TCGA-UC-A7PD-01	PPP1R21	ENST00000431614.1,ENST00000416913.1,ENST00000294952.8	chr2	48722817:48722910:48725631:48725874:48732702:48732735,	48725632	48725874	48725635	48725635	Nonsense_Mutation	C	T	p.Q566*
CESC	TCGA-C5-A2LZ-01	PPP5C	ENST00000486994.1,ENST00000012443.4,ENST00000525507.1,ENST00000478046.1,ENST00000492109.2,ENST00000391919.1,ENST00000491003.1	chr19	46890622:46890710:46891664:46891705:46891809:46891852,	46891665	46891705	46891689	46891689	Nonsense_Mutation	C	G	p.S387*
CESC	TCGA-EA-A78R-01	PRR12	ENST00000418929.2	chr19	50097953:50101270:50102528:50103195:50104747:50105175,	50102529	50103195	50102572	50102572	Nonsense_Mutation	C	G	p.S1241*
CESC	TCGA-LP-A7HU-01	PSMA1	ENST00000418988.2,ENST00000396394.2,ENST00000531023.1,ENST00000396393.1,ENST00000530457.1	chr11	14532417:14532497:14535115:14535245:14535362:14536037,	14535116	14535245	14535160	14535160	Nonsense_Mutation	G	C	p.S173*
CESC	TCGA-EK-A3GJ-01	PSMB6	ENST00000270586.3	chr17	4700022:4700090:4700732:4700864:4700976:4701106,	4700733	4700864	4700801	4700801	Nonsense_Mutation	C	G	p.S80*
CESC	TCGA-C5-A1BM-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685300	89685300	Nonsense_Mutation	C	G	p.Y65*
CESC	TCGA-C5-A1BQ-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711893	89711893	Nonsense_Mutation	C	T	p.Q171*
CESC	TCGA-BI-A0VR-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717615	89717615	Nonsense_Mutation	C	T	p.Q214*
CESC	TCGA-C5-A7CL-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717661	89717661	Nonsense_Mutation	C	G	p.S229*
CESC	TCGA-EA-A5FO-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
CESC	TCGA-FU-A3NI-01	PTER	ENST00000423462.2	chr10	16479361:16479489:16526335:16526815:16528350:16528616,16478982:16479046:16526335:16526815:16528350:16528616,	16526336	16526815	16526606	16526606	Nonsense_Mutation	C	T	p.Q75*
CESC	TCGA-Q1-A6DT-01	PTGFRN	ENST00000393203.2	chr1	117503864:117504290:117509532:117509952:117516837:117516945,	117509533	117509952	117509950	117509950	Nonsense_Mutation	C	G	p.S686*
CESC	TCGA-Q1-A5R2-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380099	109380099	Nonsense_Mutation	C	G	p.S1035*
CESC	TCGA-C5-A2LZ-01	RARG	ENST00000425354.2,ENST00000548317.1,ENST00000338561.5,ENST00000327550.3,ENST00000543726.1,ENST00000550265.1,ENST00000394426.1,ENST00000543762.1	chr12	53607877:53608019:53608229:53608390:53609076:53609136,	53608230	53608390	53608313	53608313	Nonsense_Mutation	G	A	p.Q185*
CESC	TCGA-C5-A2LX-01	RASIP1	ENST00000222145.4,ENST00000601530.1	chr19	49223843:49224254:49225110:49225258:49227593:49227766,	49225111	49225258	49225250	49225250	Nonsense_Mutation	C	T	p.W851*
CESC	TCGA-C5-A7CJ-01	RBM27	ENST00000265271.5	chr5	145650516:145650621:145651045:145651237:145664184:145664295,	145651046	145651237	145651103	145651103	Nonsense_Mutation	C	T	p.R952*
CESC	TCGA-FU-A23L-01	RECQL5	ENST00000420326.2,ENST00000582464.1,ENST00000578201.1,ENST00000423245.2,ENST00000340830.5,ENST00000584999.1,ENST00000317905.5	chr17	73647265:73647345:73654377:73654540:73657034:73657068,	73654378	73654540	73654526	73654526	Nonsense_Mutation	C	T	p.W334*
CESC	TCGA-EA-A3HT-01	REPS1	ENST00000478483.2	chr6	139226028:139226269:139229804:139229953:139232412:139232508,	139229805	139229953	139229911	139229911	Nonsense_Mutation	G	A	p.R704*
CESC	TCGA-C5-A1MJ-01	RGS2	ENST00000464302.1	chr1	192778272:192778311:192779295:192779561:192780110:192780162,	192779296	192779561	192779519	192779519	Nonsense_Mutation	C	T	p.Q78*
CESC	TCGA-C5-A1BK-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62631229:62631409:62631942:62632048:62634711:62634795,	62631943	62632048	62632020	62632020	Nonsense_Mutation	C	T	p.W615*
CESC	TCGA-C5-A1BK-01	RHOBTB1	ENST00000490827.1	chr10	62631229:62631409:62631800:62632048:62634711:62634795,	62631801	62632048	62632020	62632020	Nonsense_Mutation	C	T	p.W615*
CESC	TCGA-C5-A1MK-01	ROCK1	ENST00000399799.2	chr18	18572791:18572898:18586311:18586558:18586659:18586751,	18586312	18586558	18586468	18586468	Nonsense_Mutation	G	A	p.Q577*
CESC	TCGA-Q1-A73O-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41814295:41814448:41814962:41815158:41815442:41815552,	41814963	41815158	41815045	41815045	Nonsense_Mutation	G	C	p.S887*
CESC	TCGA-IR-A3LA-01	RPGR	ENST00000318842.7,ENST00000309513.3,ENST00000338898.3	chrX	38135839:38136025:38146346:38146498:38147113:38147294,	38146347	38146498	38146372	38146372	Nonsense_Mutation	G	C	p.S627*
CESC	TCGA-IR-A3LA-01	RPGR	ENST00000339363.3	chrX	38135839:38136025:38146346:38147294:38150211:38150277,	38146347	38147294	38146372	38146372	Nonsense_Mutation	G	C	p.S627*
CESC	TCGA-C5-A1BQ-01	RPS6KB2	ENST00000528964.1,ENST00000312629.5,ENST00000525996.3	chr11	67200422:67200513:67200596:67200687:67200810:67200918,	67200597	67200687	67200648	67200648	Nonsense_Mutation	G	A	p.W253*
CESC	TCGA-FU-A3TQ-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640441	17640441	Nonsense_Mutation	G	A	p.Q238*
CESC	TCGA-Q1-A5R2-01	RUNX1T1	ENST00000521553.1,ENST00000518844.1,ENST00000517792.1,ENST00000265814.3,ENST00000519847.1,ENST00000422361.2,ENST00000436581.2,ENST00000518992.1,ENST00000521054.1,ENST00000520724.1,ENST00000396218.1,ENST00000523290.1,ENST00000360348.2,ENST00000523629.1	chr8	93023315:93023319:93026806:93027048:93029453:93029591,	93026807	93027048	93026941	93026941	Nonsense_Mutation	G	A	p.Q123*
CESC	TCGA-EK-A2RJ-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000609119.1,ENST00000542537.1	chr1	237935311:237935400:237936819:237936948:237941965:237942070,	237936820	237936948	237936946	237936946	Nonsense_Mutation	C	T	p.Q3931*
CESC	TCGA-EK-A2RJ-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34018586:34018707:34021057:34021227:34023674:34023895,	34021058	34021227	34021064	34021064	Nonsense_Mutation	C	A	p.S2347*
CESC	TCGA-FU-A3NI-01	SAP130	ENST00000259234.6,ENST00000450957.1	chr2	128775253:128775489:128783754:128783872:128785513:128785633,	128783755	128783872	128783857	128783857	Nonsense_Mutation	G	A	p.Q30*
CESC	TCGA-EK-A2RJ-01	SBF2	ENST00000533770.1,ENST00000256190.8	chr11	9864171:9864317:9867111:9867287:9868502:9868630,	9867112	9867287	9867227	9867227	Nonsense_Mutation	G	A	p.Q999*
CESC	TCGA-C5-A1MK-01	SCAI	ENST00000373549.4	chr9	127818154:127818286:127828268:127828337:127904911:127904956,	127828269	127828337	127828300	127828300	Nonsense_Mutation	G	A	p.Q46*
CESC	TCGA-C5-A7UH-01	SERGEF	ENST00000529151.1,ENST00000265965.5	chr11	17809795:17809960:17899754:17899791:18010143:18010222,17809795:17809960:17899754:17899791:17940241:17940326,17809795:17809960:17899754:17899791:17981016:17981170,	17899755	17899791	17899778	17899778	Nonsense_Mutation	G	C	p.S342*
CESC	TCGA-UC-A7PF-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135205465	135205465	Nonsense_Mutation	G	C	p.S507*
CESC	TCGA-C5-A2LZ-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229939	8229939	Nonsense_Mutation	C	T	p.Q840*
CESC	TCGA-EK-A2PG-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3677232:3677535:3677731:3677989:3678444:3678780,	3677732	3677989	3677876	3677876	Nonsense_Mutation	G	A	p.R746*
CESC	TCGA-HG-A2PA-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3677232:3677535:3677731:3677989:3678444:3678780,	3677732	3677989	3677954	3677954	Nonsense_Mutation	G	A	p.Q720*
CESC	TCGA-C5-A1MK-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91190055:91193083:91195816:91196076:91198360:91198940,	91195817	91196076	91195879	91195879	Nonsense_Mutation	G	C	p.S409*
CESC	TCGA-JW-A5VI-01	SLC35F3	ENST00000366618.3,ENST00000366617.3	chr1	234367162:234367487:234444846:234445066:234452347:234452473,	234444847	234445066	234444857	234444857	Nonsense_Mutation	C	T	p.R207*
CESC	TCGA-C5-A7CL-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963886	33963886	Nonsense_Mutation	G	T	p.Y266*
CESC	TCGA-UC-A7PF-01	SLC47A2	ENST00000574239.1	chr17	19611058:19611156:19611614:19611866:19612028:19612073,	19611615	19611866	19611826	19611826	Nonsense_Mutation	G	C	p.S191*
CESC	TCGA-EK-A2RJ-01	SLC5A6	ENST00000310574.3,ENST00000412471.1,ENST00000408041.1,ENST00000488743.2	chr2	27429350:27429402:27429744:27429810:27430125:27430658,	27429745	27429810	27429780	27429780	Nonsense_Mutation	G	A	p.R142*
CESC	TCGA-EK-A2R9-01	SLC8A1	ENST00000407929.2	chr2	40404891:40404995:40405526:40405633:40655612:40657110,	40405527	40405633	40405622	40405622	Nonsense_Mutation	G	T	p.S607*
CESC	TCGA-DR-A0ZM-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440753	27440753	Nonsense_Mutation	G	C	p.S126*
CESC	TCGA-EA-A3HT-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593411	48593411	Nonsense_Mutation	C	T	p.Q388*
CESC	TCGA-IR-A3LL-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559333	56559333	Nonsense_Mutation	G	A	p.Q970*
CESC	TCGA-EA-A3QE-01	SNAP23	ENST00000249647.3,ENST00000563333.1,ENST00000568514.1,ENST00000563765.1	chr15	42807434:42807552:42821872:42822017:42823610:42823642,42820459:42820618:42821872:42822017:42823610:42823642,	42821873	42822017	42821973	42821973	Nonsense_Mutation	G	T	p.E176*
CESC	TCGA-FU-A3HY-01	SOX5	ENST00000441133.2	chr12	24048831:24048958:24102497:24102595:24103875:24103954,	24102498	24102595	24102511	24102511	Nonsense_Mutation	G	A	p.Q9*
CESC	TCGA-JX-A3Q0-01	SPA17	ENST00000227135.2,ENST00000524614.1,ENST00000532692.1	chr11	124545209:124545314:124551284:124551355:124561591:124561678,	124551285	124551355	124551305	124551305	Nonsense_Mutation	G	T	p.E59*
CESC	TCGA-EK-A2RN-01	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66461242:66461332:66461609:66461834:66463747:66464011,	66461610	66461834	66461714	66461714	Nonsense_Mutation	C	A	p.E1467*
CESC	TCGA-DS-A0VM-01	SRBD1	ENST00000535761.1,ENST00000263736.4	chr2	45646926:45647033:45704131:45704214:45715378:45715470,	45704132	45704214	45704134	45704134	Nonsense_Mutation	G	A	p.Q683*
CESC	TCGA-UC-A7PF-01	SREBF2	ENST00000361204.4,ENST00000424354.1	chr22	42264614:42264796:42266892:42267039:42269801:42270023,	42266893	42267039	42267031	42267031	Nonsense_Mutation	C	T	p.Q287*
CESC	TCGA-EK-A2R8-01	SRSF5	ENST00000553635.1,ENST00000394366.2,ENST00000553521.1,ENST00000557154.1	chr14	70235514:70235613:70235898:70235968:70237183:70237257,	70235899	70235968	70235952	70235952	Nonsense_Mutation	C	G	p.S117*
CESC	TCGA-EK-A2R8-01	SRSF5	ENST00000557460.1,ENST00000556587.1	chr14	70235329:70235391:70235514:70235968:70237183:70237257,	70235515	70235968	70235952	70235952	Nonsense_Mutation	C	G	p.S117*
CESC	TCGA-EK-A2R8-01	SRSF5	ENST00000556184.1	chr14	70235514:70235613:70235898:70237257:70237711:70237822,	70235899	70237257	70235952	70235952	Nonsense_Mutation	C	G	p.S117*
CESC	TCGA-IR-A3LB-01	SSH2	ENST00000394848.1,ENST00000540801.1,ENST00000269033.3	chr17	27975161:27975362:27977671:27977818:27982578:27982625,	27977672	27977818	27977704	27977704	Nonsense_Mutation	C	T	p.W371*
CESC	TCGA-EK-A2PM-01	ST7	ENST00000393447.4,ENST00000432298.1,ENST00000393443.1,ENST00000393451.3,ENST00000323984.3,ENST00000393444.3,ENST00000422922.1,ENST00000393449.1	chr7	116849840:116849991:116861976:116862116:116869815:116870150,116859137:116859230:116861976:116862116:116869815:116870150,	116861977	116862116	116861992	116861992	Nonsense_Mutation	C	G	p.S505*
CESC	TCGA-C5-A7CK-01	ST8SIA4	ENST00000231461.5	chr5	100142638:100147833:100191806:100192100:100222046:100222304,	100191807	100192100	100191850	100191850	Nonsense_Mutation	G	A	p.R252*
CESC	TCGA-DR-A0ZM-01	SYN1	ENST00000340666.4,ENST00000295987.7	chrX	47435529:47435632:47435730:47435805:47435896:47436039,	47435731	47435805	47435781	47435781	Nonsense_Mutation	C	T	p.W335*
CESC	TCGA-EK-A2RA-01	TAF11	ENST00000420584.2	chr6	34845749:34846497:34848065:34848153:34850708:34850857,	34848066	34848153	34848131	34848131	Nonsense_Mutation	C	A	p.E115*
CESC	TCGA-JW-A5VJ-01	TAPBP	ENST00000426633.2,ENST00000489157.1,ENST00000456592.2,ENST00000475304.1,ENST00000434618.2	chr6	33271904:33271994:33272073:33272415:33272765:33272838,	33272074	33272415	33272263	33272263	Nonsense_Mutation	G	A	p.Q341*
CESC	TCGA-LP-A4AW-01	TBC1D1	ENST00000446803.2,ENST00000421339.2,ENST00000261439.4	chr4	38037208:38037319:38051238:38051519:38055819:38055865,38047491:38047524:38051238:38051519:38055819:38055865,	38051239	38051519	38051422	38051422	Nonsense_Mutation	C	T	p.Q605*
CESC	TCGA-C5-A7CL-01	TENM4	ENST00000278550.7	chr11	78372493:78372636:78379981:78381596:78383077:78383374,	78379982	78381596	78381478	78381478	Nonsense_Mutation	G	C	p.S1971*
CESC	TCGA-C5-A7UC-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157306	106157306	Nonsense_Mutation	C	G	p.S736*
CESC	TCGA-EA-A3Y4-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133913666:133913798:133918932:133919145:133920430:133920585,	133918933	133919145	133919127	133919127	Nonsense_Mutation	C	T	p.Q1277*
CESC	TCGA-EA-A50E-01	TMEM178A	ENST00000281961.2	chr2	39893058:39893514:39931220:39931334:39934188:39934276,	39931221	39931334	39931262	39931262	Nonsense_Mutation	C	T	p.Q148*
CESC	TCGA-C5-A1BI-01	TMEM30A	ENST00000370050.5,ENST00000518161.1,ENST00000230461.6	chr6	75970539:75970627:75974946:75975054:75977356:75977464,	75974947	75975054	75975015	75975015	Nonsense_Mutation	G	A	p.Q129*
CESC	TCGA-EK-A2RJ-01	TMEM38B	ENST00000374688.1,ENST00000374692.3	chr9	108484814:108484902:108510353:108510471:108536145:108536360,	108510354	108510471	108510422	108510422	Nonsense_Mutation	C	G	p.S204*
CESC	TCGA-EK-A3GK-01	TMEM38B	ENST00000374688.1,ENST00000374692.3	chr9	108484814:108484902:108510353:108510471:108536145:108536360,	108510354	108510471	108510422	108510422	Nonsense_Mutation	C	G	p.S204*
CESC	TCGA-FU-A2QG-01	TMEM87A	ENST00000389834.4,ENST00000562946.1,ENST00000563371.1,ENST00000569075.1,ENST00000448392.1,ENST00000568400.1	chr15	42529742:42529813:42531867:42531929:42536247:42536365,	42531868	42531929	42531888	42531888	Nonsense_Mutation	C	A	p.E222*
CESC	TCGA-FU-A3WB-01	TMPRSS11D	ENST00000505533.1,ENST00000283916.6,ENST00000545541.1	chr4	68691524:68691592:68692978:68693238:68698921:68699099,	68692979	68693238	68692991	68692991	Nonsense_Mutation	G	A	p.Q314*
CESC	TCGA-C5-A1MF-01	TP63	ENST00000354600.5,ENST00000440651.2,ENST00000456148.1,ENST00000449992.1,ENST00000382063.4,ENST00000264731.3	chr3	189607210:189607273:189608577:189608671:189611994:189612010,	189608578	189608671	189608648	189608648	Nonsense_Mutation	C	T	p.Q575*
CESC	TCGA-C5-A2LZ-01	TPX2	ENST00000340513.4,ENST00000300403.6	chr20	30382204:30382351:30385206:30385318:30386167:30386355,	30385207	30385318	30385276	30385276	Nonsense_Mutation	C	T	p.Q671*
CESC	TCGA-EK-A2RJ-01	TRAPPC9	ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	141310567:141310713:141321346:141321473:141370148:141370292,	141321347	141321473	141321456	141321456	Nonsense_Mutation	G	A	p.Q603*
CESC	TCGA-FU-A23L-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230723835	230723835	Nonsense_Mutation	G	C	p.S185*
CESC	TCGA-LP-A4AV-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38248364:38248504:38266135:38266472:38320073:38320592,	38266136	38266472	38266158	38266158	Nonsense_Mutation	C	T	p.W404*
CESC	TCGA-IR-A3LH-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38248364:38248504:38266135:38266472:38320073:38320592,	38266136	38266472	38266217	38266217	Nonsense_Mutation	G	A	p.Q385*
CESC	TCGA-MY-A5BD-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616305	116616305	Nonsense_Mutation	G	A	p.Q631*
CESC	TCGA-EA-A5O9-01	TRPV2	ENST00000577397.1,ENST00000338560.7	chr17	16335097:16335164:16335279:16335614:16336887:16337012,	16335280	16335614	16335395	16335395	Nonsense_Mutation	C	A	p.Y590*
CESC	TCGA-C5-A2LZ-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98576391:98576527:98579391:98579583:98580886:98581082,	98579392	98579583	98579413	98579413	Nonsense_Mutation	G	T	p.E2879*
CESC	TCGA-FU-A770-01	TSPYL2	ENST00000375442.4,ENST00000463525.1,ENST00000578306.1,ENST00000553557.1	chrX	53113990:53114048:53114135:53114281:53114408:53114503,	53114136	53114281	53114244	53114244	Nonsense_Mutation	C	G	p.S369*
CESC	TCGA-IR-A3LL-01	TTC8	ENST00000345383.5,ENST00000380656.2,ENST00000338104.6,ENST00000354441.6,ENST00000358622.5,ENST00000536576.1,ENST00000346301.4,ENST00000555057.1	chr14	89338680:89338796:89341369:89341453:89343637:89344295,	89341370	89341453	89341385	89341385	Nonsense_Mutation	C	T	p.Q471*
CESC	TCGA-EK-A2RC-01	TTF2	ENST00000463696.1,ENST00000369466.4	chr1	117637946:117637989:117638770:117638921:117639972:117640055,	117638771	117638921	117638784	117638784	Nonsense_Mutation	C	T	p.Q1017*
CESC	TCGA-C5-A1M6-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57955661:57955695:57958254:57958471:57962021:57962117,57955661:57955695:57958254:57958471:57963443:57963591,	57958255	57958471	57958298	57958298	Nonsense_Mutation	G	C	p.S165*
CESC	TCGA-C5-A1MH-01	TWISTNB	ENST00000222567.5	chr7	19738187:19738350:19739694:19739903:19744401:19744543,	19739695	19739903	19739762	19739762	Nonsense_Mutation	C	A	p.E180*
CESC	TCGA-EK-A3GJ-01	UBTF	ENST00000302904.4,ENST00000529383.1,ENST00000436088.1	chr17	42289240:42289374:42289711:42289822:42290186:42290307,	42289712	42289822	42289777	42289777	Nonsense_Mutation	G	A	p.Q236*
CESC	TCGA-EA-A5ZF-01	UBXN4	ENST00000272638.9	chr2	136513197:136513261:136519387:136519481:136527338:136527393,	136519388	136519481	136519420	136519420	Nonsense_Mutation	C	T	p.Q181*
CESC	TCGA-C5-A7X3-01	UCK1	ENST00000372215.4,ENST00000372210.3,ENST00000372211.3,ENST00000494584.1	chr9	134401331:134401364:134404330:134404425:134404514:134404544,	134404331	134404425	134404408	134404408	Nonsense_Mutation	G	A	p.R181*
CESC	TCGA-C5-A2LZ-01	USP35	ENST00000529308.1,ENST00000526425.1,ENST00000528910.1	chr11	77911695:77911854:77916887:77917081:77918575:77918669,	77916888	77917081	77917022	77917022	Nonsense_Mutation	C	G	p.S29*
CESC	TCGA-C5-A2LZ-01	USP35	ENST00000530546.1,ENST00000441408.2	chr11	77911695:77911854:77916887:77917085:77918575:77918669,	77916888	77917085	77917022	77917022	Nonsense_Mutation	C	G	p.S29*
CESC	TCGA-EK-A2RJ-01	UXT	ENST00000335890.2,ENST00000333119.3	chrX	47511479:47511543:47516581:47516689:47517180:47517262,47511479:47511543:47516581:47516689:47516970:47517038,	47516582	47516689	47516583	47516583	Nonsense_Mutation	C	A	p.E131*
CESC	TCGA-IR-A3LK-01	WDR13	ENST00000479279.1,ENST00000376729.5,ENST00000218056.5	chrX	48457986:48458105:48458706:48459014:48460171:48460217,	48458707	48459014	48458940	48458940	Nonsense_Mutation	C	T	p.R253*
CESC	TCGA-LP-A5U3-01	WDTC1	ENST00000447062.2,ENST00000361771.3,ENST00000319394.3	chr1	27589642:27589726:27608729:27608776:27609828:27609940,	27608730	27608776	27608762	27608762	Nonsense_Mutation	G	A	p.W55*
CESC	TCGA-EA-A411-01	WRAP53	ENST00000498311.1,ENST00000467699.1	chr17	7592907:7593019:7604058:7604147:7604744:7604867,	7604059	7604147	7604112	7604112	Nonsense_Mutation	T	A	p.Y232*
CESC	TCGA-EK-A2PL-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21307127:21307239:21309196:21309308:21311118:21311177,	21309197	21309308	21309246	21309246	Nonsense_Mutation	C	G	p.S122*
CESC	TCGA-IR-A3LL-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21314181:21314256:21314341:21314475:21314574:21314632,	21314342	21314475	21314412	21314412	Nonsense_Mutation	G	A	p.W335*
CESC	TCGA-C5-A7CK-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266120	75266120	Nonsense_Mutation	C	T	p.R1374*
CESC	TCGA-IR-A3LL-01	YTHDC2	ENST00000161863.4	chr5	112915282:112915392:112917113:112917406:112919998:112920176,	112917114	112917406	112917198	112917198	Nonsense_Mutation	C	T	p.Q1147*
CESC	TCGA-DG-A2KM-01	ZAN	ENST00000546292.1,ENST00000443370.1,ENST00000349350.6,ENST00000421100.1,ENST00000538115.1,ENST00000348028.3,ENST00000449052.1,ENST00000427578.1,ENST00000542585.1	chr7	100388563:100388735:100389587:100389770:100390026:100390101,	100389588	100389770	100389622	100389622	Nonsense_Mutation	G	T	p.E2521*
CESC	TCGA-C5-A7UE-01	ZDHHC24	ENST00000310442.3	chr11	66306148:66307295:66311174:66311452:66313193:66313477,	66311175	66311452	66311238	66311238	Nonsense_Mutation	G	A	p.R166*
CESC	TCGA-EK-A2PL-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038798	72038798	Nonsense_Mutation	G	A	p.Q380*
CESC	TCGA-FU-A23K-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828798	72828798	Nonsense_Mutation	G	A	p.Q2595*
CESC	TCGA-UC-A7PF-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829029	72829029	Nonsense_Mutation	G	A	p.Q2518*
CESC	TCGA-Q1-A6DT-01	ZKSCAN3	ENST00000377255.3	chr6	28318048:28318165:28327301:28327765:28329100:28329248,	28327302	28327765	28327424	28327424	Nonsense_Mutation	G	T	p.E21*
CESC	TCGA-MU-A51Y-01	ZNF347	ENST00000452676.2,ENST00000601469.2	chr19	53651933:53652062:53652493:53652620:53656985:53657046,53651933:53652065:53652493:53652620:53656985:53657042,	53652494	53652620	53652617	53652617	Nonsense_Mutation	G	A	p.Q7*
CESC	TCGA-MY-A5BD-01	ZNF414	ENST00000255616.8	chr19	8577487:8577595:8577912:8578225:8578927:8579032,	8577913	8578225	8578212	8578212	Nonsense_Mutation	G	C	p.S6*
CESC	TCGA-FU-A3HY-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19905635	19905635	Nonsense_Mutation	G	C	p.S354*
CESC	TCGA-IR-A3LI-01	ZNF570	ENST00000589725.1	chr19	37960378:37960459:37961205:37961289:37966782:37966909,37960472:37960557:37961205:37961289:37966782:37966909,	37961206	37961289	37961245	37961245	Nonsense_Mutation	G	T	p.E53*
CESC	TCGA-Q1-A6DT-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966714	64966714	Nonsense_Mutation	C	G	p.S554*
CESC	TCGA-Q1-A5R2-01	ZNF611	ENST00000319783.1,ENST00000543227.1,ENST00000540744.1	chr19	53210029:53210117:53217267:53217394:53219084:53219166,	53217268	53217394	53217357	53217357	Nonsense_Mutation	G	C	p.S34*
CESC	TCGA-MU-A51Y-01	ZNF627	ENST00000587939.1,ENST00000361113.5	chr19	11725341:11725468:11725641:11725702:11727509:11727588,	11725642	11725702	11725659	11725659	Nonsense_Mutation	C	T	p.Q50*
CESC	TCGA-EK-A2RC-01	ZNF74	ENST00000437275.1,ENST00000403682.3,ENST00000357502.5,ENST00000400451.2,ENST00000493734.1,ENST00000356671.5	chr22	20754921:20755048:20755566:20755662:20759666:20760088,	20755567	20755662	20755625	20755625	Nonsense_Mutation	G	A	p.W102*
CESC	TCGA-IR-A3LL-01	ZWINT	ENST00000460654.1	chr10	58118316:58118448:58118565:58118708:58119236:58119293,	58118566	58118708	58118684	58118684	Nonsense_Mutation	C	A	p.E169*
CESC	TCGA-IR-A3LL-01	ZWINT	ENST00000361148.6,ENST00000489649.2,ENST00000478181.1	chr10	58118316:58118448:58118669:58118708:58119236:58119293,	58118670	58118708	58118684	58118684	Nonsense_Mutation	C	A	p.E169*
CESC	TCGA-Q1-A73O-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560284	32560284	Nonsense_Mutation	C	T	p.Q137*
CESC	TCGA-C5-A1BK-01	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000338354.3	chr10	124345809:124345899:124348459:124348783:124350180:124350210,	124348460	124348783	124348625	124348625	Nonsense_Mutation	C	A	p.S650*
CESC	TCGA-JW-A5VL-01	ESPN	ENST00000475228.1,ENST00000377828.1,ENST00000416731.1,ENST00000434576.1,ENST00000461727.1	chr1	6511717:6511808:6511892:6512156:6517243:6517323,	6511893	6512156	6511968	6511968	Nonsense_Mutation	C	T	p.Q713*
CESC	TCGA-IR-A3LK-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120192585	120192585	Nonsense_Mutation	C	T	p.Q524*
CESC	TCGA-Q1-A73O-01	ABCC4	ENST00000376887.4,ENST00000471041.1,ENST00000412704.1	chr13	95695935:95696041:95696519:95696692:95705348:95705438,	95696520	95696692	95696671	95696671	Nonsense_Mutation	C	A	p.E1160*
CESC	TCGA-IR-A3LA-01	ACADM	ENST00000529059.1,ENST00000525808.1,ENST00000541113.1,ENST00000370834.5,ENST00000420607.2,ENST00000526196.1,ENST00000543667.1,ENST00000370841.4	chr1	76216135:76216231:76226806:76227055:76228376:76228494,	76226807	76227055	76226834	76226834	Nonsense_Mutation	G	T	p.E329*
CESC	TCGA-EK-A2PG-01	ADAM17	ENST00000497134.1,ENST00000310823.3	chr2	9666239:9666373:9667914:9668083:9675962:9676051,	9667915	9668083	9667999	9667999	Nonsense_Mutation	G	A	p.Q179*
CESC	TCGA-C5-A1BF-01	ADCK1	ENST00000393639.4	chr14	78365442:78365601:78366901:78367017:78374145:78374262,	78366902	78367017	78366917	78366917	Nonsense_Mutation	G	T	p.E200*
CESC	TCGA-IR-A3LK-01	ADD1	ENST00000510101.1	chr4	2877622:2877837:2886241:2886393:2895739:2895820,	2886242	2886393	2886370	2886370	Nonsense_Mutation	C	T	p.Q163*
CESC	TCGA-JW-A5VL-01	AKNA	ENST00000223791.3,ENST00000374079.4,ENST00000374075.5,ENST00000374088.3,ENST00000492875.1,ENST00000307564.4	chr9	117098444:117099586:117103812:117104005:117104288:117104405,	117103813	117104005	117103902	117103902	Nonsense_Mutation	C	T	p.W1326*
CESC	TCGA-JW-A5VL-01	ANKFN1	ENST00000566473.2,ENST00000318698.2	chr17	54535223:54535340:54543716:54543932:54554848:54555015,	54543717	54543932	54543853	54543853	Nonsense_Mutation	C	G	p.S568*
CESC	TCGA-IR-A3LK-01	ANKS1A	ENST00000360359.3	chr6	34985249:34985836:35021875:35021942:35027923:35028030,	35021876	35021942	35021879	35021879	Nonsense_Mutation	G	T	p.E672*
CESC	TCGA-JW-A5VL-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35155067:35155242:35159724:35159810:35162952:35163123,	35159725	35159810	35159783	35159783	Nonsense_Mutation	G	A	p.Q1266*
CESC	TCGA-DR-A0ZM-01	AQR	ENST00000156471.5	chr15	35162952:35163123:35166028:35166200:35166877:35167065,	35166029	35166200	35166070	35166070	Nonsense_Mutation	G	A	p.Q1186*
CESC	TCGA-EK-A3GK-01	ARFGEF2	ENST00000371917.4	chr20	47567859:47568006:47569241:47569421:47570092:47570327,	47569242	47569421	47569353	47569353	Nonsense_Mutation	C	T	p.Q179*
CESC	TCGA-C5-A1BQ-01	ARMC10	ENST00000323735.6,ENST00000434153.1,ENST00000323716.3	chr7	102715614:102715858:102716223:102716328:102724128:102724277,	102716224	102716328	102716269	102716269	Nonsense_Mutation	C	A	p.S62*
CESC	TCGA-JX-A3Q0-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789274	150789274	Nonsense_Mutation	C	A	p.E598*
CESC	TCGA-IR-A3LK-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551364	10551364	Nonsense_Mutation	C	T	p.Q444*
CESC	TCGA-JX-A3Q0-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10565966:10566040:10567335:10567391,10551228:10551386:10565966:10566040:10567335:10567391,	10565967	10566040	10565998	10565998	Nonsense_Mutation	G	T	p.E462*
CESC	TCGA-JW-A5VL-01	ATP6V0B	ENST00000461670.1	chr1	44440650:44440779:44441336:44441520:44441761:44441845,	44441337	44441520	44441391	44441391	Nonsense_Mutation	C	G	p.S41*
CESC	TCGA-IR-A3LK-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55317598:55317729:55319265:55319404:55319715:55319961,	55319266	55319404	55319361	55319361	Nonsense_Mutation	G	T	p.S1102*
CESC	TCGA-IR-A3LK-01	AUTS2	ENST00000406775.2,ENST00000418686.1,ENST00000342771.4	chr7	70250940:70251024:70252194:70252417:70254733:70254912,	70252195	70252417	70252204	70252204	Nonsense_Mutation	C	G	p.S773*
CESC	TCGA-IR-A3LA-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160175489:160176929:160181321:160181465:160182163:160182429,	160181322	160181465	160181437	160181437	Nonsense_Mutation	C	A	p.E2080*
CESC	TCGA-Q1-A73O-01	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24989444:24989530:24995015:24995158:25002719:25002883,	24995016	24995158	24995103	24995103	Nonsense_Mutation	G	A	p.Q244*
CESC	TCGA-JW-A5VL-01	BEND7	ENST00000396898.2,ENST00000396900.2,ENST00000341083.3,ENST00000378605.3	chr10	13522898:13523124:13534610:13534876:13538765:13538888,	13534611	13534876	13534813	13534813	Nonsense_Mutation	G	C	p.S212*
CESC	TCGA-Q1-A73O-01	BRD8	ENST00000411594.2,ENST00000230901.5,ENST00000454473.1,ENST00000515254.1,ENST00000425764.1,ENST00000402931.1,ENST00000432618.1,ENST00000418329.1	chr5	137507753:137507823:137513259:137513356:137514284:137514288,	137513260	137513356	137513280	137513280	Nonsense_Mutation	C	A	p.E15*
CESC	TCGA-IR-A3LA-01	BSG	ENST00000574970.1	chr19	572595:572701:577773:578121:579499:579629,575051:575140:577773:578121:579499:579629,	577774	578121	577839	577839	Nonsense_Mutation	G	T	p.E45*
CESC	TCGA-IR-A3LK-01	CARD14	ENST00000344227.2,ENST00000573882.1,ENST00000571450.1,ENST00000575500.1	chr17	78175978:78176219:78177620:78177684:78178025:78178034,	78177621	78177684	78177625	78177625	Nonsense_Mutation	C	T	p.Q742*
CESC	TCGA-C5-A1BQ-01	CCDC120	ENST00000496529.2,ENST00000603986.1,ENST00000597275.1,ENST00000603906.1,ENST00000422185.2,ENST00000376396.3,ENST00000536628.2	chrX	48921391:48921532:48921900:48922195:48922566:48922629,	48921901	48922195	48922114	48922114	Nonsense_Mutation	C	T	p.Q180*
CESC	TCGA-EK-A3GK-01	CCDC120	ENST00000496529.2,ENST00000603986.1,ENST00000597275.1,ENST00000603906.1,ENST00000422185.2,ENST00000376396.3,ENST00000536628.2	chrX	48921900:48922195:48922566:48922629:48922984:48923159,	48922567	48922629	48922603	48922603	Nonsense_Mutation	C	G	p.S219*
CESC	TCGA-IR-A3LK-01	CCDC124	ENST00000597436.1	chr19	18045904:18046000:18047218:18047388:18053464:18053654,	18047219	18047388	18047326	18047326	Nonsense_Mutation	G	T	p.E33*
CESC	TCGA-EK-A2PG-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219631	45219631	Nonsense_Mutation	G	A	p.Q454*
CESC	TCGA-DR-A0ZM-01	CDK14	ENST00000406263.1,ENST00000380050.3,ENST00000265741.3	chr7	90376995:90377090:90419887:90419967:90492489:90492584,	90419888	90419967	90419921	90419921	Nonsense_Mutation	C	T	p.Q89*
CESC	TCGA-EA-A3HU-01	CENPE	ENST00000265148.3,ENST00000503705.1	chr4	104084293:104084413:104084635:104084710:104095892:104096060,	104084636	104084710	104084651	104084651	Nonsense_Mutation	A	T	p.Y569*
CESC	TCGA-EK-A3GK-01	CHCHD3	ENST00000448878.1,ENST00000496427.1,ENST00000262570.5,ENST00000476546.1	chr7	132470285:132470421:132481202:132481338:132523158:132523229,	132481203	132481338	132481277	132481277	Nonsense_Mutation	C	A	p.E196*
CESC	TCGA-EK-A3GK-01	CHGA	ENST00000216492.5	chr14	93396063:93396160:93397594:93398047:93398714:93398725,	93397595	93398047	93397861	93397861	Nonsense_Mutation	C	T	p.Q208*
CESC	TCGA-IR-A3LA-01	CHL1	ENST00000256509.2	chr3	383594:383765:384666:384714:386271:386392,	384667	384714	384667	384667	Nonsense_Mutation	T	G	p.L227*
CESC	TCGA-Q1-A73O-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46804823:46804918:46806037:46806223:46810230:46810323,	46806038	46806223	46806154	46806154	Nonsense_Mutation	G	A	p.Q680*
CESC	TCGA-Q1-A73O-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000538120.1,ENST00000545889.1,ENST00000358808.2,ENST00000536634.1,ENST00000543205.1,ENST00000537178.1	chr12	122762700:122762750:122763338:122763489:122763574:122763692,	122763339	122763489	122763443	122763443	Nonsense_Mutation	G	C	p.S1271*
CESC	TCGA-DR-A0ZM-01	COBLL1	ENST00000342193.4,ENST00000456171.1,ENST00000194871.6,ENST00000375458.2,ENST00000392717.2,ENST00000409184.3,ENST00000493868.1	chr2	165561461:165561615:165578584:165578821:165578934:165579001,	165578585	165578821	165578671	165578671	Nonsense_Mutation	G	A	p.Q370*
CESC	TCGA-JX-A3Q0-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189861890:189861944:189862061:189862115:189862425:189862479,	189862062	189862115	189862095	189862095	Nonsense_Mutation	C	T	p.Q617*
CESC	TCGA-EK-A3GK-01	COL4A1	ENST00000375820.4	chr13	110818578:110818650:110819504:110819577:110821975:110822109,	110819505	110819577	110819508	110819508	Nonsense_Mutation	G	A	p.Q1316*
CESC	TCGA-DR-A0ZM-01	CPNE3	ENST00000517354.1,ENST00000517391.1,ENST00000521271.1,ENST00000198765.4	chr8	87558855:87558909:87559938:87559998:87560528:87560662,	87559939	87559998	87559984	87559984	Nonsense_Mutation	C	T	p.Q289*
CESC	TCGA-Q1-A73O-01	CRLF1	ENST00000392386.3	chr19	18704046:18704389:18704874:18704917:18705056:18705244,	18704875	18704917	18704914	18704914	Nonsense_Mutation	C	A	p.E406*
CESC	TCGA-JX-A3Q0-01	CTPS2	ENST00000359276.4	chrX	16717045:16717216:16720859:16721064:16730457:16730775,	16720860	16721064	16720991	16720991	Nonsense_Mutation	G	T	p.S12*
CESC	TCGA-IR-A3LK-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539426.1,ENST00000301764.7	chr11	61094250:61094365:61096834:61097056:61097429:61097546,	61096835	61097056	61096837	61096837	Nonsense_Mutation	G	A	p.Q183*
CESC	TCGA-JW-A5VL-01	DDX20	ENST00000533164.1,ENST00000369702.4,ENST00000536167.1	chr1	112303327:112303470:112303608:112303747:112303847:112303906,	112303609	112303747	112303677	112303677	Nonsense_Mutation	C	T	p.Q298*
CESC	TCGA-EA-A3HU-01	DDX25	ENST00000530414.1,ENST00000526875.1,ENST00000263576.6,ENST00000525943.1	chr11	125786908:125787146:125788522:125788685:125791085:125791274,	125788523	125788685	125788628	125788628	Nonsense_Mutation	C	T	p.Q382*
CESC	TCGA-JW-A5VL-01	DGAT1	ENST00000528718.1,ENST00000526479.2,ENST00000524965.1,ENST00000332324.4	chr8	145539987:145540372:145540515:145540578:145540684:145540739,	145540516	145540578	145540570	145540570	Nonsense_Mutation	C	A	p.E254*
CESC	TCGA-IR-A3LH-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225393672:225393881:225394669:225394922:225418774:225418853,	225394670	225394922	225394691	225394691	Nonsense_Mutation	G	T	p.E2048*
CESC	TCGA-EA-A3HU-01	DNAH9	ENST00000262442.4,ENST00000454412.2	chr17	11532733:11532901:11535903:11536020:11539950:11540101,	11535904	11536020	11535955	11535955	Nonsense_Mutation	C	T	p.R524*
CESC	TCGA-C5-A1BQ-01	DNAJB2	ENST00000463463.1,ENST00000425450.1,ENST00000472019.1,ENST00000392086.4,ENST00000473750.1,ENST00000336576.5	chr2	220147558:220147651:220147854:220147957:220148140:220148211,	220147855	220147957	220147867	220147867	Nonsense_Mutation	C	A	p.S153*
CESC	TCGA-Q1-A73O-01	EHHADH	ENST00000231887.3,ENST00000456310.1	chr3	184922443:184922545:184935923:184936028:184947219:184947331,	184935924	184936028	184935936	184935936	Nonsense_Mutation	G	A	p.Q186*
CESC	TCGA-DR-A0ZM-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150293435:150293549:150300986:150301052,150290282:150290316:150293435:150293549:150299404:150299533,	150293436	150293549	150293454	150293454	Nonsense_Mutation	C	T	p.Q468*
CESC	TCGA-IR-A3LK-01	EIF4B	ENST00000416762.3,ENST00000550704.1,ENST00000550390.1,ENST00000549481.1,ENST00000549077.1,ENST00000552490.1,ENST00000420463.3	chr12	53400267:53400280:53410256:53410394:53412581:53412790,	53410257	53410394	53410310	53410310	Nonsense_Mutation	G	T	p.E23*
CESC	TCGA-JW-A5VL-01	EIF5B	ENST00000494190.1,ENST00000289371.6	chr2	100011271:100011346:100013222:100013361:100015210:100015372,	100013223	100013361	100013320	100013320	Nonsense_Mutation	C	T	p.Q1118*
CESC	TCGA-IR-A3LK-01	EMCN	ENST00000296420.4	chr4	101344177:101344237:101344468:101344561:101368689:101368728,	101344469	101344561	101344472	101344472	Nonsense_Mutation	G	A	p.Q169*
CESC	TCGA-EK-A3GK-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306543	27306543	Nonsense_Mutation	G	T	p.E702*
CESC	TCGA-EK-A3GK-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306552	27306552	Nonsense_Mutation	G	T	p.E705*
CESC	TCGA-DR-A0ZM-01	ENG	ENST00000344849.3	chr9	130591965:130592106:130605372:130605524:130616567:130616915,	130605373	130605524	130605495	130605495	Nonsense_Mutation	G	A	p.Q33*
CESC	TCGA-DR-A0ZM-01	EP400	ENST00000333577.4	chr12	132445743:132446499:132448076:132448187:132464241:132464338,	132448077	132448187	132448185	132448185	Nonsense_Mutation	C	T	p.Q482*
CESC	TCGA-DR-A0ZM-01	EPG5	ENST00000592272.1,ENST00000590884.1,ENST00000587884.1,ENST00000282041.5,ENST00000585906.1	chr18	43464581:43464776:43467715:43467872:43469762:43469905,	43467716	43467872	43467829	43467829	Nonsense_Mutation	G	A	p.Q1666*
CESC	TCGA-Q1-A73O-01	ERAP1	ENST00000508227.1	chr5	96136636:96136703:96139105:96139530:96143562:96143612,	96139106	96139530	96139368	96139368	Nonsense_Mutation	G	A	p.Q88*
CESC	TCGA-Q1-A73O-01	ERAP1	ENST00000443439.2	chr5	96136636:96136703:96139105:96139646:96143562:96143612,	96139106	96139646	96139368	96139368	Nonsense_Mutation	G	A	p.Q88*
CESC	TCGA-EK-A2PG-01	ERLIN1	ENST00000407654.3,ENST00000421367.2,ENST00000370408.2	chr10	101915901:101915991:101923760:101923852:101927104:101927163,	101923761	101923852	101923794	101923794	Nonsense_Mutation	C	A	p.E208*
CESC	TCGA-IR-A3LA-01	EXOC3L1	ENST00000314586.6	chr16	67220933:67221041:67221127:67221740:67222623:67222843,	67221128	67221740	67221525	67221525	Nonsense_Mutation	C	A	p.E215*
CESC	TCGA-EK-A2PG-01	EXOC6	ENST00000260762.6,ENST00000371552.4,ENST00000371547.4	chr10	94669240:94669388:94675514:94675670:94688095:94688179,94669240:94669388:94675514:94675670:94679738:94679807,	94675515	94675670	94675656	94675656	Nonsense_Mutation	G	T	p.E285*
CESC	TCGA-EK-A2PG-01	EXOC7	ENST00000335146.7	chr17	74085255:74085401:74087223:74087316:74090494:74090570,74086409:74086478:74087223:74087316:74090494:74090570,74086409:74086562:74087223:74087316:74090494:74090570,	74087224	74087316	74087299	74087299	Nonsense_Mutation	G	A	p.Q276*
CESC	TCGA-DR-A0ZM-01	FAM13A	ENST00000264344.5,ENST00000515600.1,ENST00000509094.1	chr4	89859238:89859392:89941610:89941820:89950610:89950800,89912123:89912301:89941610:89941820:89950610:89950800,	89941611	89941820	89941646	89941646	Nonsense_Mutation	G	C	p.S131*
CESC	TCGA-JW-A5VL-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1,ENST00000434523.2	chr2	48049356:48049442:48050281:48050499:48059487:48059590,	48050282	48050499	48050303	48050303	Nonsense_Mutation	G	C	p.S532*
CESC	TCGA-C5-A1BQ-01	FCGR1A	ENST00000369168.4	chr1	149754725:149754746:149755558:149755813:149759921:149760173,	149755559	149755813	149755775	149755775	Nonsense_Mutation	C	G	p.S90*
CESC	TCGA-JW-A5VL-01	FCRL5	ENST00000368191.3,ENST00000361835.3,ENST00000368190.3,ENST00000356953.4,ENST00000368189.3	chr1	157508875:157509154:157512648:157512927:157514051:157514336,	157512649	157512927	157512838	157512838	Nonsense_Mutation	C	A	p.E312*
CESC	TCGA-EA-A3HU-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124534	76124534	Nonsense_Mutation	G	C	p.S52*
CESC	TCGA-IR-A3LH-01	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3	chr1	154956317:154956542:154960580:154961325:154962035:154962183,	154960581	154961325	154961004	154961004	Nonsense_Mutation	G	T	p.E266*
CESC	TCGA-EK-A3GK-01	FOCAD	ENST00000338382.6,ENST00000380249.1,ENST00000605031.1	chr9	20758088:20758190:20764867:20765072:20770030:20770111,	20764868	20765072	20764941	20764941	Nonsense_Mutation	G	T	p.E190*
CESC	TCGA-EK-A3GK-01	FOCAD	ENST00000604103.1	chr9	20758088:20758190:20764872:20765072:20770030:20770111,	20764873	20765072	20764941	20764941	Nonsense_Mutation	G	T	p.E190*
CESC	TCGA-JW-A5VL-01	FSTL3	ENST00000588773.1,ENST00000166139.4,ENST00000591552.2	chr19	680273:680489:681332:681560:681649:681673,	681333	681560	681413	681413	Nonsense_Mutation	C	T	p.R196*
CESC	TCGA-JW-A5VL-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087433	109087433	Nonsense_Mutation	C	T	p.Q550*
CESC	TCGA-EA-A3HU-01	GHDC	ENST00000587427.1,ENST00000593209.1,ENST00000301671.8,ENST00000428494.2	chr17	40342202:40342288:40342641:40342775:40342849:40342921,	40342642	40342775	40342753	40342753	Nonsense_Mutation	G	A	p.R393*
CESC	TCGA-IR-A3LH-01	GLIS3	ENST00000324333.10,ENST00000381971.3,ENST00000461870.1	chr9	3827697:3828408:3829309:3829492:3856008:3856184,	3829310	3829492	3829394	3829394	Nonsense_Mutation	C	A	p.E858*
CESC	TCGA-Q1-A73O-01	GLIS3	ENST00000481827.1,ENST00000477901.1,ENST00000381971.3	chr9	4118744:4118881:4125733:4125941:4144838:4145193,4118744:4118881:4125733:4125941:4286037:4286523,	4125734	4125941	4125836	4125836	Nonsense_Mutation	G	T	p.S165*
CESC	TCGA-IR-A3LK-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93277895:93278099:93282595:93282766:93286052:93286181,	93282596	93282766	93282695	93282695	Nonsense_Mutation	G	T	p.E474*
CESC	TCGA-EA-A3HU-01	HIP1R	ENST00000536772.1,ENST00000535831.1,ENST00000452196.2,ENST00000253083.4	chr12	123335381:123335458:123335782:123335844:123338589:123338730,	123335783	123335844	123335842	123335842	Nonsense_Mutation	C	G	p.S192*
CESC	TCGA-IR-A3LA-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091090	143091090	Nonsense_Mutation	C	A	p.E1596*
CESC	TCGA-IR-A3LK-01	HMGCR	ENST00000511206.1,ENST00000343975.5,ENST00000287936.4	chr5	74654994:74655135:74655222:74655381:74655809:74655964,	74655223	74655381	74655364	74655364	Nonsense_Mutation	C	T	p.Q814*
CESC	TCGA-JW-A5VL-01	IFI16	ENST00000430894.2,ENST00000368131.4,ENST00000359709.3,ENST00000295809.7,ENST00000493884.1	chr1	158990130:158990319:159002313:159002481:159015086:159015254,	159002314	159002481	159002440	159002440	Nonsense_Mutation	C	T	p.Q430*
CESC	TCGA-IR-A3LA-01	IFI44L	ENST00000486882.1,ENST00000476521.1,ENST00000342282.3,ENST00000370751.5,ENST00000476876.1,ENST00000494910.1	chr1	79102784:79102888:79106705:79106806:79107119:79107170,	79106706	79106806	79106759	79106759	Nonsense_Mutation	C	T	p.Q368*
CESC	TCGA-JW-A5VL-01	IL9R	ENST00000540897.1,ENST00000424344.3,ENST00000369423.2	chrX	155231072:155231173:155232546:155232684:155233113:155233225,	155232547	155232684	155232553	155232553	Nonsense_Mutation	C	G	p.S51*
CESC	TCGA-IR-A3LA-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237623	33237623	Nonsense_Mutation	C	G	p.S948*
CESC	TCGA-JX-A3Q0-01	LAMB2	ENST00000542580.1,ENST00000418109.1,ENST00000305544.4	chr3	49161875:49162045:49162133:49162358:49162438:49162602,	49162134	49162358	49162313	49162313	Nonsense_Mutation	G	C	p.S977*
CESC	TCGA-JX-A3Q0-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183205594:183205739:183206486:183206639:183207441:183207556,	183206487	183206639	183206490	183206490	Nonsense_Mutation	G	T	p.E869*
CESC	TCGA-EK-A2PG-01	LILRB3	ENST00000407860.2	chr19	54722997:54723114:54723737:54723788:54724024:54724075,	54723738	54723788	54723752	54723752	Nonsense_Mutation	G	C	p.S449*
CESC	TCGA-Q1-A73O-01	LMO3	ENST00000536509.1,ENST00000536172.1,ENST00000453727.2	chr12	16713439:16713472:16753647:16753802:16760869:16760934,16713439:16713472:16753647:16753802:16758999:16759066,	16753648	16753802	16753787	16753787	Nonsense_Mutation	G	C	p.S21*
CESC	TCGA-Q1-A73O-01	LMO3	ENST00000538051.1	chr12	16713439:16713472:16753588:16753802:16758999:16759066,16713439:16713472:16753588:16753802:16760869:16760934,	16753589	16753802	16753787	16753787	Nonsense_Mutation	G	C	p.S21*
CESC	TCGA-Q1-A73O-01	LMO3	ENST00000544754.1	chr12	16713439:16713472:16753534:16753802:16758999:16759066,16713439:16713472:16753534:16753802:16760869:16760934,	16753535	16753802	16753787	16753787	Nonsense_Mutation	G	C	p.S21*
CESC	TCGA-IR-A3LK-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151829485:151829619:151829811:151830009:151835346:151835493,	151829812	151830009	151829834	151829834	Nonsense_Mutation	G	T	p.S446*
CESC	TCGA-DR-A0ZM-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42361085	42361085	Nonsense_Mutation	C	G	p.S673*
CESC	TCGA-DR-A0ZM-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68115314:68115711:68125117:68125315:68131214:68131383,	68125118	68125315	68125245	68125245	Nonsense_Mutation	G	T	p.E206*
CESC	TCGA-EK-A3GK-01	LRRC36	ENST00000565019.2,ENST00000567823.1,ENST00000563189.1,ENST00000329956.6	chr16	67409217:67409315:67410629:67410775:67412491:67412615,	67410630	67410775	67410677	67410677	Nonsense_Mutation	C	T	p.Q570*
CESC	TCGA-IR-A3LK-01	LSP1	ENST00000381775.1	chr11	1886394:1886492:1887694:1888141:1901316:1901454,	1887695	1888141	1887970	1887970	Nonsense_Mutation	C	G	p.S89*
CESC	TCGA-IR-A3LA-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135744028	135744028	Nonsense_Mutation	G	C	p.S805*
CESC	TCGA-IR-A3LH-01	MAP3K2	ENST00000344908.5,ENST00000409947.1	chr2	128087496:128087584:128087967:128088081:128093445:128093545,	128087968	128088081	128088060	128088060	Nonsense_Mutation	G	A	p.Q96*
CESC	TCGA-JW-A5VL-01	MAP4K5	ENST00000554990.1,ENST00000013125.4	chr14	50892624:50892695:50895379:50895472:50895909:50895978,	50895380	50895472	50895433	50895433	Nonsense_Mutation	G	C	p.S758*
CESC	TCGA-EK-A3GK-01	MCM3AP	ENST00000397708.1,ENST00000291688.1	chr21	47686895:47687056:47690314:47690477:47692474:47692537,	47690315	47690477	47690437	47690437	Nonsense_Mutation	C	A	p.E836*
CESC	TCGA-C5-A1BQ-01	MED12L	ENST00000474524.1	chr3	151129065:151129295:151130926:151131083:151134099:151134210,	151130927	151131083	151131027	151131027	Nonsense_Mutation	C	T	p.Q2046*
CESC	TCGA-EK-A2PG-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962686	21962686	Nonsense_Mutation	C	T	p.Q487*
CESC	TCGA-EK-A2PG-01	MLLT10	ENST00000438473.1	chr10	21959377:21959633:21962569:21962848:21970260:21970305,	21962570	21962848	21962686	21962686	Nonsense_Mutation	C	T	p.Q487*
CESC	TCGA-DR-A0ZM-01	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20414065	20414065	Nonsense_Mutation	G	C	p.S260*
CESC	TCGA-EK-A3GK-01	MRPL43	ENST00000342071.1,ENST00000370242.4,ENST00000448244.1	chr10	102743511:102743574:102746505:102746732:102746846:102746953,102743790:102743831:102746505:102746732:102746846:102746953,	102746506	102746732	102746715	102746715	Nonsense_Mutation	C	A	p.E86*
CESC	TCGA-IR-A3LH-01	NBAS	ENST00000429842.1,ENST00000281513.5	chr2	15542291:15542425:15555669:15555843:15557650:15557705,	15555670	15555843	15555687	15555687	Nonsense_Mutation	G	A	p.Q974*
CESC	TCGA-DR-A0ZM-01	NEK5	ENST00000355568.4	chr13	52663382:52663449:52667189:52667371:52673878:52674012,	52667190	52667371	52667254	52667254	Nonsense_Mutation	G	A	p.Q382*
CESC	TCGA-Q1-A73O-01	NFATC3	ENST00000569766.1,ENST00000570212.1,ENST00000567152.1,ENST00000346183.3	chr16	68217142:68217269:68224670:68225678:68248231:68248335,68217142:68217269:68224670:68225678:68260252:68260374,	68224671	68225678	68224713	68224713	Nonsense_Mutation	C	G	p.S714*
CESC	TCGA-EK-A2PG-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89133184:89133247:89133382:89133547:89135493:89135710,	89133383	89133547	89133529	89133529	Nonsense_Mutation	C	A	p.G310*
CESC	TCGA-C5-A1BQ-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115357727:115357832:115364367:115364679:115365520:115365628,	115364368	115364679	115364418	115364418	Nonsense_Mutation	C	A	p.E1401*
CESC	TCGA-IR-A3LK-01	NUP214	ENST00000526346.1,ENST00000451030.1,ENST00000525980.1,ENST00000359428.5,ENST00000411637.2	chr9	134049554:134049705:134050846:134051008:134053697:134053797,	134050847	134051008	134050876	134050876	Nonsense_Mutation	C	T	p.Q1064*
CESC	TCGA-JW-A5VL-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833167	25833167	Nonsense_Mutation	C	G	p.S219*
CESC	TCGA-IR-A3LK-01	PAAF1	ENST00000535604.1,ENST00000544909.1,ENST00000504441.2,ENST00000544552.1,ENST00000536003.1,ENST00000542293.1,ENST00000376384.5,ENST00000310571.3,ENST00000541951.1,ENST00000543814.1	chr11	73610190:73610289:73611314:73611465:73620443:73620557,	73611315	73611465	73611423	73611423	Nonsense_Mutation	G	T	p.E164*
CESC	TCGA-IR-A3LK-01	PAAF1	ENST00000546039.1	chr11	73610190:73610289:73611355:73611465:73620443:73620557,	73611356	73611465	73611423	73611423	Nonsense_Mutation	G	T	p.E164*
CESC	TCGA-IR-A3LH-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34759012:34759191:34805906:34806087:34985245:34985347,	34805907	34806087	34805961	34805961	Nonsense_Mutation	G	A	p.Q117*
CESC	TCGA-EA-A3HU-01	PARVB	ENST00000338758.7,ENST00000406477.3,ENST00000444029.1,ENST00000404989.1	chr22	44495932:44496003:44514917:44515020:44527366:44527507,	44514918	44515020	44514992	44514992	Nonsense_Mutation	T	A	p.Y149*
CESC	TCGA-C5-A1BQ-01	PBX3	ENST00000373492.2,ENST00000538998.1,ENST00000373489.5,ENST00000342287.5,ENST00000373483.2,ENST00000447726.2,ENST00000373482.2	chr9	128691933:128692124:128697750:128697886:128722962:128723128,	128697751	128697886	128697785	128697785	Nonsense_Mutation	G	T	p.E248*
CESC	TCGA-IR-A3LA-01	PCMTD2	ENST00000299468.7,ENST00000308824.6	chr20	62887196:62887223:62891294:62891625:62895781:62895879,	62891295	62891625	62891509	62891509	Nonsense_Mutation	C	G	p.S64*
CESC	TCGA-DR-A0ZM-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32091059	32091059	Nonsense_Mutation	C	G	p.S2502*
CESC	TCGA-JX-A3Q0-01	PI4KA	ENST00000477245.1,ENST00000572273.1,ENST00000414196.3,ENST00000255882.6	chr22	21072980:21073110:21075585:21075706:21080775:21080829,	21075586	21075706	21075635	21075635	Nonsense_Mutation	C	T	p.W1689*
CESC	TCGA-C5-A1BQ-01	PIH1D2	ENST00000431456.1,ENST00000532211.1,ENST00000530641.1,ENST00000525744.1,ENST00000280350.4	chr11	111941855:111942007:111942358:111942482:111943721:111943793,	111942359	111942482	111942361	111942361	Nonsense_Mutation	G	C	p.S100*
CESC	TCGA-EA-A3HU-01	PLEKHG7	ENST00000344636.3	chr12	93157816:93157970:93162758:93162856:93163863:93166231,	93162759	93162856	93162806	93162806	Nonsense_Mutation	C	T	p.R328*
CESC	TCGA-Q1-A73O-01	POLK	ENST00000509126.1,ENST00000515295.1,ENST00000380481.3,ENST00000241436.4,ENST00000511527.1,ENST00000510815.2,ENST00000514141.1,ENST00000505975.1,ENST00000503479.2,ENST00000504026.1	chr5	74872604:74872758:74877033:74877273:74879117:74879242,	74877034	74877273	74877066	74877066	Nonsense_Mutation	G	T	p.E243*
CESC	TCGA-Q1-A73O-01	PPIB	ENST00000561048.1	chr15	64452311:64452396:64454239:64454353:64455050:64455205,	64454240	64454353	64454326	64454326	Nonsense_Mutation	C	A	p.E55*
CESC	TCGA-EK-A3GK-01	PPP6R1	ENST00000412770.2,ENST00000587283.1	chr19	55743169:55743350:55743442:55743579:55748010:55748189,	55743443	55743579	55743452	55743452	Nonsense_Mutation	G	A	p.Q706*
CESC	TCGA-IR-A3LH-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31603170:31603242:31603358:31603526:31603743:31603826,	31603359	31603526	31603372	31603372	Nonsense_Mutation	C	G	p.S1796*
CESC	TCGA-JX-A3Q0-01	PTPRN	ENST00000295718.2,ENST00000446182.1,ENST00000440552.1,ENST00000412847.1,ENST00000451506.1,ENST00000606213.1,ENST00000409251.3,ENST00000442029.1,ENST00000423636.2	chr2	220168456:220168553:220172165:220172279:220172513:220172564,	220172166	220172279	220172265	220172265	Nonsense_Mutation	G	A	p.Q61*
CESC	TCGA-EK-A2PG-01	PTPRT	ENST00000373198.4,ENST00000373187.1,ENST00000356100.2,ENST00000373193.3,ENST00000373201.1,ENST00000373184.1,ENST00000373190.1	chr20	40710521:40710657:40713321:40713485:40714367:40714493,	40713322	40713485	40713386	40713386	Nonsense_Mutation	G	A	p.R1380*
CESC	TCGA-JW-A5VL-01	PUM1	ENST00000257075.5,ENST00000373741.4,ENST00000440538.2,ENST00000480602.1,ENST00000426105.2,ENST00000525843.1,ENST00000373747.3,ENST00000525948.1	chr1	31468028:31468067:31478699:31478878:31479840:31479946,	31478700	31478878	31478834	31478834	Nonsense_Mutation	G	A	p.Q196*
CESC	TCGA-Q1-A73O-01	QARS	ENST00000464962.1,ENST00000482468.1,ENST00000430182.1,ENST00000306125.6,ENST00000414533.1	chr3	49136776:49136864:49136942:49137080:49137193:49137286,	49136943	49137080	49137068	49137068	Nonsense_Mutation	G	T	p.Y467*
CESC	TCGA-JW-A5VL-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37729373	37729373	Nonsense_Mutation	C	A	p.E983*
CESC	TCGA-JW-A5VL-01	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141291988:141292063:141292785:141292909:141295841:141295948,	141292786	141292909	141292835	141292835	Nonsense_Mutation	C	G	p.S470*
CESC	TCGA-C5-A1BQ-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039158	49039158	Nonsense_Mutation	G	T	p.E746*
CESC	TCGA-EK-A2PG-01	RBFOX1	ENST00000547372.1,ENST00000535565.2,ENST00000355637.4,ENST00000552089.1	chr16	7726775:7726840:7743316:7743369:7759057:7759133,	7743317	7743369	7743345	7743345	Nonsense_Mutation	G	T	p.E385*
CESC	TCGA-EK-A3GK-01	RBM11	ENST00000400577.3,ENST00000468643.1,ENST00000495055.1	chr21	15593417:15593490:15596758:15596858:15599200:15599705,	15596759	15596858	15596832	15596832	Nonsense_Mutation	C	T	p.Q136*
CESC	TCGA-EK-A3GK-01	RBM17	ENST00000432931.1	chr10	6131033:6131156:6139010:6139151:6143233:6143350,	6139011	6139151	6139113	6139113	Nonsense_Mutation	C	T	p.Q29*
CESC	TCGA-EK-A3GK-01	RHCE	ENST00000349438.4	chr1	25712201:25712335:25715466:25715604:25729086:25729193,25712201:25712335:25715466:25715604:25717239:25717406,25701839:25701919:25715466:25715604:25717239:25717406,	25715467	25715604	25715555	25715555	Nonsense_Mutation	G	T	p.S284*
CESC	TCGA-Q1-A73O-01	RNF40	ENST00000357890.5,ENST00000324685.6,ENST00000563683.1,ENST00000402121.3	chr16	30780158:30780308:30780506:30780719:30780795:30780921,	30780507	30780719	30780684	30780684	Nonsense_Mutation	G	T	p.E809*
CESC	TCGA-IR-A3LA-01	ROS1	ENST00000368507.3,ENST00000368508.3	chr6	117609462:117609965:117622136:117622300:117629956:117630091,	117622137	117622300	117622176	117622176	Nonsense_Mutation	C	A	p.E2232*
CESC	TCGA-IR-A3LK-01	RPAP2	ENST00000610020.1	chr1	92786155:92786191:92789001:92789932:92798947:92799030,	92789002	92789932	92789379	92789379	Nonsense_Mutation	C	A	p.S301*
CESC	TCGA-JW-A5VL-01	SCPEP1	ENST00000570480.1,ENST00000575395.1,ENST00000571898.1,ENST00000575423.1,ENST00000576154.1,ENST00000262288.3,ENST00000570589.1,ENST00000572710.1,ENST00000571345.1,ENST00000573789.1	chr17	55065112:55065211:55065576:55065651:55068459:55068532,	55065577	55065651	55065599	55065599	Nonsense_Mutation	C	G	p.S165*
CESC	TCGA-JW-A5VL-01	SCPEP1	ENST00000575395.1,ENST00000572591.1,ENST00000575423.1,ENST00000576154.1,ENST00000262288.3,ENST00000570589.1,ENST00000573789.1	chr17	55068459:55068532:55072341:55072379:55072867:55072905,	55072342	55072379	55072350	55072350	Nonsense_Mutation	C	A	p.C119*
CESC	TCGA-C5-A1MI-01	SEC14L3	ENST00000434642.1,ENST00000539629.1	chr22	30866493:30866569:30867146:30867264:30867891:30867973,	30867147	30867264	30867221	30867221	Nonsense_Mutation	G	C	p.S33*
CESC	TCGA-JW-A5VL-01	SESN3	ENST00000278499.2,ENST00000536441.1	chr11	94906311:94906505:94908661:94908806:94910882:94911073,	94908662	94908806	94908718	94908718	Nonsense_Mutation	T	A	p.R446*
CESC	TCGA-IR-A3LH-01	SIRT1	ENST00000212015.6,ENST00000497639.1	chr10	69647174:69647291:69648639:69648881:69651159:69651254,	69648640	69648881	69648778	69648778	Nonsense_Mutation	C	G	p.S229*
CESC	TCGA-JW-A5VL-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170079084	170079084	Nonsense_Mutation	C	G	p.S322*
CESC	TCGA-JW-A5VL-01	SLAMF1	ENST00000235739.5	chr1	160589565:160589639:160604402:160604687:160606980:160607319,	160604403	160604687	160604405	160604405	Nonsense_Mutation	G	C	p.S233*
CESC	TCGA-IR-A3LA-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000548130.1,ENST00000267064.4,ENST00000550164.1,ENST00000549757.1,ENST00000552674.1	chr12	56572602:56572631:56572780:56572840:56574760:56574885,	56572781	56572840	56572822	56572822	Nonsense_Mutation	G	C	p.S367*
CESC	TCGA-Q1-A73O-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6412747	6412747	Nonsense_Mutation	C	G	p.S151*
CESC	TCGA-IR-A3LK-01	SMPD4	ENST00000453750.1,ENST00000439886.1,ENST00000351288.6,ENST00000412570.1,ENST00000452225.2,ENST00000339679.7,ENST00000491128.1,ENST00000454468.1,ENST00000443958.2,ENST00000431183.2,ENST00000482171.1,ENST00000426662.2,ENST00000409031.1,ENST00000433118.1	chr2	130910318:130910457:130910615:130910744:130910891:130911023,	130910616	130910744	130910714	130910714	Nonsense_Mutation	C	A	p.E725*
CESC	TCGA-DR-A0ZM-01	ST6GALNAC2	ENST00000225276.5,ENST00000586520.1,ENST00000585736.1	chr17	74569423:74569445:74570446:74570621:74574837:74574898,	74570447	74570621	74570585	74570585	Nonsense_Mutation	G	A	p.Q75*
CESC	TCGA-IR-A3LH-01	ST8SIA2	ENST00000268164.3,ENST00000539113.1,ENST00000555434.1	chr15	92981582:92981840:92987865:92988159:93007329:93007614,	92987866	92988159	92988086	92988086	Nonsense_Mutation	G	T	p.E257*
CESC	TCGA-C5-A1BQ-01	STAG3	ENST00000439782.1,ENST00000394018.2	chr7	99780345:99780462:99786434:99786639:99787067:99787219,	99786435	99786639	99786601	99786601	Nonsense_Mutation	C	G	p.S226*
CESC	TCGA-JX-A3Q0-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67942263:67942488:67943467:67943685:67943786:67943963,	67943468	67943685	67943510	67943510	Nonsense_Mutation	G	T	p.E948*
CESC	TCGA-IR-A3LH-01	STAT6	ENST00000554764.1,ENST00000543873.2,ENST00000300134.3,ENST00000454075.3,ENST00000538913.2,ENST00000555318.1,ENST00000537215.2,ENST00000556155.1	chr12	57492797:57492861:57493076:57493223:57493549:57493577,	57493077	57493223	57493155	57493155	Nonsense_Mutation	G	A	p.R605*
CESC	TCGA-IR-A3LA-01	STYXL1	ENST00000248600.1,ENST00000454618.1,ENST00000359697.3,ENST00000451157.1,ENST00000431581.1	chr7	75633075:75633173:75634576:75634722:75643059:75643205,	75634577	75634722	75634707	75634707	Nonsense_Mutation	G	C	p.S108*
CESC	TCGA-IR-A3LH-01	SUMO1	ENST00000409205.1	chr2	203079079:203079157:203084754:203084829:203103162:203103185,203079079:203079152:203084754:203084829:203103162:203103185,	203084755	203084829	203084816	203084816	Nonsense_Mutation	G	C	p.S9*
CESC	TCGA-JW-A5VL-01	SYBU	ENST00000419099.1,ENST00000446070.2,ENST00000528647.1,ENST00000533895.1,ENST00000529190.1,ENST00000533821.1,ENST00000534184.1	chr8	110631212:110631268:110654956:110655158:110656864:110656945,	110654957	110655158	110654959	110654959	Nonsense_Mutation	G	C	p.S76*
CESC	TCGA-JW-A5VL-01	SYBU	ENST00000433638.1,ENST00000533171.1,ENST00000408908.2,ENST00000422135.1,ENST00000276646.9,ENST00000440310.1,ENST00000534501.1,ENST00000528716.1,ENST00000531284.1,ENST00000524720.1	chr8	110631212:110631268:110654956:110655161:110656864:110656945,	110654957	110655161	110654959	110654959	Nonsense_Mutation	G	C	p.S76*
CESC	TCGA-JW-A5VL-01	SYBU	ENST00000424158.2	chr8	110631212:110631268:110654956:110655176:110656864:110656945,	110654957	110655176	110654959	110654959	Nonsense_Mutation	G	C	p.S76*
CESC	TCGA-JW-A5VL-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854012	40854012	Nonsense_Mutation	C	A	p.E128*
CESC	TCGA-EK-A3GK-01	SYT5	ENST00000589172.1,ENST00000537500.1,ENST00000354308.3,ENST00000592470.1	chr19	55687372:55687492:55689563:55689736:55690330:55690433,	55689564	55689736	55689700	55689700	Nonsense_Mutation	G	C	p.S39*
CESC	TCGA-JX-A3Q0-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32816428:32816617:32816766:32816895:32818096:32818294,	32816767	32816895	32816891	32816891	Nonsense_Mutation	G	C	p.S478*
CESC	TCGA-EK-A2PG-01	TBC1D10C	ENST00000312390.5,ENST00000542590.1,ENST00000529635.1,ENST00000533745.1	chr11	67173065:67173172:67173373:67173488:67174097:67174132,	67173374	67173488	67173470	67173470	Nonsense_Mutation	C	G	p.S187*
CESC	TCGA-EK-A2PG-01	TBC1D10C	ENST00000526387.1,ENST00000530967.2	chr11	67173065:67173172:67173377:67173488:67174097:67174132,	67173378	67173488	67173470	67173470	Nonsense_Mutation	C	G	p.S187*
CESC	TCGA-C5-A1BQ-01	TCN2	ENST00000405742.3	chr22	31006866:31007050:31008871:31009029:31010335:31010488,	31008872	31009029	31008988	31008988	Nonsense_Mutation	C	G	p.S129*
CESC	TCGA-C5-A1BQ-01	TCN2	ENST00000215838.3,ENST00000450638.1	chr22	31006866:31007050:31008859:31009029:31010335:31010488,	31008860	31009029	31008988	31008988	Nonsense_Mutation	C	G	p.S129*
CESC	TCGA-IR-A3LH-01	TEAD1	ENST00000527575.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12900435:12900447:12901254:12901389:12902551:12902598,12886384:12886447:12901254:12901389:12902551:12902598,	12901255	12901389	12901304	12901304	Nonsense_Mutation	C	G	p.S112*
CESC	TCGA-JW-A5VL-01	TENM3	ENST00000502950.1,ENST00000511685.1,ENST00000406950.2	chr4	183601476:183601502:183601695:183601890:183602966:183603069,	183601696	183601890	183601861	183601861	Nonsense_Mutation	C	G	p.S602*
CESC	TCGA-JW-A5VL-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752157	36752157	Nonsense_Mutation	C	G	p.S109*
CESC	TCGA-DR-A0ZM-01	TIMELESS	ENST00000553532.1,ENST00000229201.4,ENST00000554616.1	chr12	56814746:56814918:56815134:56815277:56815510:56815593,	56815135	56815277	56815235	56815235	Nonsense_Mutation	G	C	p.S923*
CESC	TCGA-IR-A3LK-01	TM2D3	ENST00000559107.1,ENST00000559024.1,ENST00000333202.3	chr15	102190272:102190364:102191898:102191976:102192473:102192570,	102191899	102191976	102191956	102191956	Nonsense_Mutation	G	A	p.Q38*
CESC	TCGA-EA-A3HU-01	TMED1	ENST00000591157.1	chr19	10945609:10945793:10945966:10946029:10946684:10946877,	10945967	10946029	10945990	10945990	Nonsense_Mutation	C	A	p.E75*
CESC	TCGA-EA-A3HU-01	TMED1	ENST00000591695.1	chr19	10943726:10943889:10945931:10946029:10946684:10946871,	10945932	10946029	10945990	10945990	Nonsense_Mutation	C	A	p.E75*
CESC	TCGA-EA-A3HU-01	TMEM131	ENST00000186436.5	chr2	98435075:98435184:98449827:98449889:98451083:98451140,	98449828	98449889	98449874	98449874	Nonsense_Mutation	A	C	p.L343*
CESC	TCGA-Q1-A73O-01	TMEM145	ENST00000598766.1,ENST00000301204.3	chr19	42821021:42821115:42821860:42822033:42824468:42824589,	42821861	42822033	42821970	42821970	Nonsense_Mutation	C	G	p.S337*
CESC	TCGA-JW-A5VL-01	TNFRSF14	ENST00000463835.1	chr1	2492120:2492153:2492932:2493254:2494303:2494335,	2492933	2493254	2493180	2493180	Nonsense_Mutation	C	G	p.S207*
CESC	TCGA-JW-A5VL-01	TNFRSF14	ENST00000475523.1,ENST00000466750.1,ENST00000355716.4	chr1	2492120:2492153:2493111:2493254:2494303:2494335,	2493112	2493254	2493180	2493180	Nonsense_Mutation	C	G	p.S207*
CESC	TCGA-C5-A1BQ-01	TNFRSF1A	ENST00000536194.1	chr12	6442532:6442682:6442902:6443004:6443256:6443410,	6442903	6443004	6442925	6442925	Nonsense_Mutation	G	C	p.S49*
CESC	TCGA-C5-A1BQ-01	TNFRSF1A	ENST00000162749.2,ENST00000366159.4,ENST00000437813.3,ENST00000539372.1,ENST00000440083.2	chr12	6442532:6442682:6442902:6443031:6443256:6443410,	6442903	6443031	6442925	6442925	Nonsense_Mutation	G	C	p.S49*
CESC	TCGA-Q1-A73O-01	TRAPPC10	ENST00000291574.4	chr21	45478983:45479095:45483418:45483666:45494204:45494351,	45483419	45483666	45483604	45483604	Nonsense_Mutation	G	T	p.E326*
CESC	TCGA-JW-A5VL-01	TROAP	ENST00000547807.1	chr12	49719858:49719941:49720450:49720503:49721009:49721110,	49720451	49720503	49720471	49720471	Nonsense_Mutation	C	G	p.S246*
CESC	TCGA-JW-A5VL-01	TRPC6	ENST00000348423.4,ENST00000344327.3,ENST00000360497.4	chr11	101344239:101344504:101347031:101347265:101353679:101353896,	101347032	101347265	101347230	101347230	Nonsense_Mutation	G	A	p.Q516*
CESC	TCGA-JX-A3Q0-01	TTC6	ENST00000478811.2,ENST00000267368.7,ENST00000382320.3,ENST00000476979.1,ENST00000553443.1	chr14	38264512:38264557:38265498:38265575:38265991:38266152,	38265499	38265575	38265554	38265554	Nonsense_Mutation	C	T	p.Q14*
CESC	TCGA-EK-A3GK-01	TTF2	ENST00000369466.4	chr1	117633949:117634032:117634438:117634572:117635352:117635523,	117634439	117634572	117634490	117634490	Nonsense_Mutation	C	G	p.S908*
CESC	TCGA-IR-A3LK-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640387	36640387	Nonsense_Mutation	G	C	p.S611*
CESC	TCGA-EK-A3GK-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606109	179606109	Nonsense_Mutation	G	A	p.Q3780*
CESC	TCGA-C5-A1BQ-01	TYW5	ENST00000441832.1,ENST00000483328.1	chr2	200804811:200804856:200808487:200808557:200813059:200813195,	200808488	200808557	200808492	200808492	Nonsense_Mutation	G	C	p.S100*
CESC	TCGA-DR-A0ZM-01	UAP1	ENST00000367924.1,ENST00000367925.1,ENST00000367926.4,ENST00000271469.3	chr1	162535826:162536138:162546566:162546771:162549217:162549393,	162546567	162546771	162546701	162546701	Nonsense_Mutation	C	T	p.Q139*
CESC	TCGA-Q1-A73O-01	UBA7	ENST00000333486.3	chr3	49848416:49848524:49848705:49848888:49849302:49849449,	49848706	49848888	49848801	49848801	Nonsense_Mutation	C	A	p.E343*
CESC	TCGA-JW-A5VL-01	UNC45A	ENST00000418476.2,ENST00000487875.1,ENST00000394275.2,ENST00000471780.1	chr15	91496158:91496276:91496384:91496540:91496688:91497323,	91496385	91496540	91496406	91496406	Nonsense_Mutation	C	T	p.Q815*
CESC	TCGA-EK-A3GK-01	URB1	ENST00000382751.3	chr21	33747706:33747792:33750753:33750850:33755730:33755863,	33750754	33750850	33750820	33750820	Nonsense_Mutation	G	A	p.Q200*
CESC	TCGA-IR-A3LA-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113684606:113684677:113685895:113686104:113688379:113688416,	113685896	113686104	113685932	113685932	Nonsense_Mutation	G	A	p.Q546*
CESC	TCGA-DR-A0ZM-01	VDAC2	ENST00000472137.1,ENST00000332211.6,ENST00000447677.1,ENST00000313132.4,ENST00000298468.5,ENST00000344036.4,ENST00000543351.1,ENST00000535553.1,ENST00000498394.1,ENST00000468285.1	chr10	76978820:76978973:76979061:76979114:76980500:76980620,	76979062	76979114	76979068	76979068	Nonsense_Mutation	C	T	p.Q119*
CESC	TCGA-EK-A3GK-01	VPS13D	ENST00000356315.4,ENST00000460333.1,ENST00000011700.6,ENST00000358136.3	chr1	12409220:12409431:12414030:12414278:12415955:12416147,	12414031	12414278	12414078	12414078	Nonsense_Mutation	C	A	p.S3160*
CESC	TCGA-JW-A5VL-01	WDR43	ENST00000407426.3,ENST00000296126.6	chr2	29145784:29145849:29147847:29148019:29149333:29149351,	29147848	29148019	29147999	29147999	Nonsense_Mutation	C	T	p.Q356*
CESC	TCGA-IR-A3LK-01	WDR61	ENST00000560807.1	chr15	78575809:78575863:78577602:78577681:78578382:78578475,78570549:78570643:78577602:78577681:78578382:78578475,	78577603	78577681	78577611	78577611	Nonsense_Mutation	G	A	p.Q274*
CESC	TCGA-IR-A3LK-01	WDR61	ENST00000559332.1	chr15	78575809:78575863:78577602:78578066:78578382:78578475,	78577603	78578066	78577611	78577611	Nonsense_Mutation	G	A	p.Q274*
CESC	TCGA-IR-A3LA-01	ZDHHC6	ENST00000369404.3,ENST00000369405.3	chr10	114192997:114193039:114194054:114194222:114198093:114198147,	114194055	114194222	114194092	114194092	Nonsense_Mutation	C	T	p.W289*
CESC	TCGA-Q1-A73O-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827610	72827610	Nonsense_Mutation	G	A	p.Q2991*
CESC	TCGA-JW-A5VL-01	ZNF609	ENST00000326648.3	chr15	64972844:64973061:64973507:64973586:64973890:64978264,	64973508	64973586	64973556	64973556	Nonsense_Mutation	C	G	p.S1404*
CESC	TCGA-IR-A3LA-01	ZYX	ENST00000449423.2,ENST00000354434.4	chr7	143079340:143079540:143079893:143080415:143085311:143085432,	143079894	143080415	143080071	143080071	Nonsense_Mutation	C	T	p.Q227*
DLBC	TCGA-RQ-A68N-01	CASP1	ENST00000436863.3,ENST00000533400.1,ENST00000532439.1,ENST00000527979.1,ENST00000393136.4,ENST00000598974.1,ENST00000525825.1,ENST00000593315.1,ENST00000526568.1,ENST00000529871.1	chr11	104897568:104897678:104899850:104899994:104900391:104900626,	104899851	104899994	104899975	104899975	Nonsense_Mutation	C	T	p.W294X
DLBC	TCGA-FF-8062-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197090495:197090594:197092825:197092978:197105172:197105286,	197092826	197092978	197092929	197092929	Nonsense_Mutation	C	A	p.E1272X
DLBC	TCGA-FF-8062-01	SEMA3A	ENST00000436949.1,ENST00000265362.4	chr7	83606447:83606512:83610636:83610794:83614751:83614793,	83610637	83610794	83610791	83610791	Nonsense_Mutation	G	A	p.Q500X
DLBC	TCGA-G8-6914-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139606259:139606442:139609146:139609213:139610961:139611141,	139609147	139609213	139609156	139609156	Nonsense_Mutation	G	A	p.Q1475X
DLBC	TCGA-G8-6914-01	WSCD1	ENST00000574946.1,ENST00000571494.1,ENST00000573634.1,ENST00000317744.5,ENST00000574232.1,ENST00000539421.1	chr17	5998421:5998543:6012926:6013086:6014090:6014255,	6012927	6013086	6012955	6012955	Nonsense_Mutation	G	A	p.W293X
DLBC	TCGA-G8-6914-01	FAM151B	ENST00000282226.4	chr5	79783942:79783967:79797610:79797736:79809422:79809480,	79797611	79797736	79797690	79797690	Nonsense_Mutation	G	A	p.W35X
DLBC	TCGA-G8-6914-01	BIN1	ENST00000316724.5	chr2	127810997:127811021:127811480:127811588:127815048:127815177,	127811481	127811588	127811561	127811561	Nonsense_Mutation	G	A	p.Q387X
DLBC	TCGA-GS-A9TT-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226924565	226924565	Nonsense_Mutation	C	A	p.E199X
DLBC	TCGA-GS-A9TT-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000561220.2	chr15	45437092:45437278:45439630:45439856:45440101:45440195,	45439631	45439856	45439820	45439820	Nonsense_Mutation	C	T	p.R838X
DLBC	TCGA-GS-A9TT-01	HNRNPA1	ENST00000340913.6	chr12	54676626:54676658:54676862:54677018:54677595:54677610,	54676863	54677018	54676988	54676988	Nonsense_Mutation	G	T	p.G293X
DLBC	TCGA-FF-8046-01	CASP8	ENST00000339403.6	chr2	202139611:202139676:202141549:202141827:202149538:202150040,	202141550	202141827	202141597	202141597	Nonsense_Mutation	T	A	p.C295X
DLBC	TCGA-FF-8046-01	CASP8	ENST00000432109.2,ENST00000323492.7,ENST00000358485.4,ENST00000264275.5,ENST00000392263.2	chr2	202137620:202137665:202141549:202141691:202149538:202150040,202137360:202137499:202141549:202141691:202149538:202149673,202139611:202139676:202141549:202141691:202149538:202150040,	202141550	202141691	202141597	202141597	Nonsense_Mutation	T	A	p.C295X
DLBC	TCGA-FA-A4BB-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105470305:105470462:105495239:105495386:105572257:105572508,	105495240	105495386	105495385	105495385	Nonsense_Mutation	G	A	p.R141X
DLBC	TCGA-FF-A7CQ-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17068662:17068725:17081700:17081843:17085896:17086068,17068662:17068725:17081700:17081843:17085906:17086068,	17081701	17081843	17081795	17081795	Nonsense_Mutation	G	A	p.Q754X
DLBC	TCGA-FA-A82F-01	MED29	ENST00000596297.1	chr19	39883103:39883162:39884192:39884300:39888096:39888338,	39884193	39884300	39884260	39884260	Nonsense_Mutation	C	T	p.Q136X
DLBC	TCGA-FA-A82F-01	MED29	ENST00000599213.2,ENST00000315588.5	chr19	39883103:39883162:39884192:39884277:39888096:39888338,	39884193	39884277	39884260	39884260	Nonsense_Mutation	C	T	p.Q136X
DLBC	TCGA-FA-A82F-01	TNPO1	ENST00000505082.1	chr5	72168494:72168547:72173054:72173173:72178293:72178354,	72173055	72173173	72173116	72173116	Nonsense_Mutation	G	A	p.W288X
DLBC	TCGA-FA-A82F-01	EIF3E	ENST00000521614.1,ENST00000522352.1,ENST00000220849.5,ENST00000519030.1	chr8	109214093:109214152:109215211:109215346:109215629:109215732,	109215212	109215346	109215229	109215229	Nonsense_Mutation	G	A	p.Q428X
DLBC	TCGA-FA-A82F-01	ANKRD17	ENST00000558247.1,ENST00000561029.1	chr4	74000833:74000982:74005247:74006000:74007457:74007509,74000833:74000979:74005247:74006000:74007457:74007509,	74005248	74006000	74005713	74005713	Nonsense_Mutation	G	A	p.R874X
DLBC	TCGA-FA-A4XK-01	GBA	ENST00000491081.1,ENST00000427500.3,ENST00000368373.3,ENST00000428024.3,ENST00000327247.5,ENST00000536770.1,ENST00000497670.1	chr1	155206186:155206260:155207131:155207369:155207924:155208097,	155207132	155207369	155207245	155207245	Nonsense_Mutation	G	A	p.R296X
DLBC	TCGA-GS-A9U4-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56079010	56079010	Nonsense_Mutation	C	T	p.R82X
DLBC	TCGA-GS-A9U3-01	FAM117A	ENST00000514018.1,ENST00000240364.2,ENST00000505159.1,ENST00000513602.1,ENST00000515240.1	chr17	47797765:47797798:47799860:47799956:47809912:47810082,	47799861	47799956	47799869	47799869	Nonsense_Mutation	G	A	p.R152X
DLBC	TCGA-GS-A9U3-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91190055:91193083:91195816:91196076:91198360:91198940,	91195817	91196076	91195994	91195994	Nonsense_Mutation	G	A	p.Q371X
DLBC	TCGA-FM-8000-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056217	27056217	Nonsense_Mutation	C	T	p.Q405X
DLBC	TCGA-FM-8000-01	MCM4	ENST00000519170.1,ENST00000262105.2,ENST00000519138.1,ENST00000523944.1	chr8	48875323:48875419:48875504:48875600:48877133:48877225,	48875505	48875600	48875553	48875553	Nonsense_Mutation	A	T	p.K216X
DLBC	TCGA-G8-6324-01	UQCRH	ENST00000311672.5	chr1	46774772:46774815:46775826:46775988:46782223:46782448,46774772:46774799:46775826:46775988:46782223:46782305,	46775827	46775988	46775856	46775856	Nonsense_Mutation	C	A	p.C37X
DLBC	TCGA-G8-6324-01	THEG	ENST00000342640.4,ENST00000528213.1	chr19	372630:372700:373469:373531:373939:374011,	373470	373531	373531	373531	Nonsense_Mutation	C	T	p.W168X
DLBC	TCGA-G8-6324-01	PDE9A	ENST00000349112.3,ENST00000495521.1	chr21	44073864:44073993:44119077:44119121:44151879:44152059,44108026:44108104:44119077:44119121:44152179:44152234,44108026:44108104:44119077:44119121:44153465:44153536,44073922:44073993:44119077:44119121:44152179:44152234,44073922:44073993:44119077:44119121:44153465:44153536,	44119078	44119121	44119120	44119120	Nonsense_Mutation	C	T	p.R113X
DLBC	TCGA-G8-6324-01	DDX31	ENST00000372159.3,ENST00000438527.3	chr9	135487473:135487642:135493716:135493828:135501050:135501132,	135493717	135493828	135493792	135493792	Nonsense_Mutation	G	A	p.R689X
DLBC	TCGA-G8-6324-01	CD36	ENST00000419819.2,ENST00000394788.3,ENST00000432207.1,ENST00000435819.1,ENST00000538969.1,ENST00000447544.2,ENST00000309881.7,ENST00000534394.1	chr7	80299268:80299338:80300292:80300480:80301237:80301356,	80300293	80300480	80300449	80300449	Nonsense_Mutation	T	G	p.Y325X
DLBC	TCGA-G8-6324-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21736486	21736486	Nonsense_Mutation	C	T	p.R341X
DLBC	TCGA-G8-6909-01	GCSAM	ENST00000487901.1,ENST00000460387.2,ENST00000470085.1,ENST00000488580.1,ENST00000484193.1,ENST00000308910.4	chr3	111842453:111842619:111844072:111844101:111845833:111845880,	111844073	111844101	111844089	111844089	Nonsense_Mutation	G	T	p.S70X
DLBC	TCGA-G8-6909-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911213	29911213	Nonsense_Mutation	G	A	p.W171X
DLBC	TCGA-G8-6909-01	NFIX	ENST00000585575.1,ENST00000587260.1,ENST00000397661.2,ENST00000360105.4,ENST00000592199.1,ENST00000586797.1,ENST00000358552.3,ENST00000588228.1,ENST00000587760.1	chr19	13135834:13136366:13183860:13183923:13184235:13184310,	13183861	13183923	13183882	13183882	Nonsense_Mutation	C	G	p.S202X
DLBC	TCGA-G8-6909-01	ALOX15B	ENST00000572022.1,ENST00000380183.4,ENST00000571240.1	chr17	7948805:7949004:7949985:7950072:7950224:7950381,	7949986	7950072	7950009	7950009	Nonsense_Mutation	C	G	p.Y408X
DLBC	TCGA-G8-6909-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39713791:39713815:39716469:39716684:39719640:39719695,	39716470	39716684	39716675	39716675	Nonsense_Mutation	T	A	p.R1156X
DLBC	TCGA-G8-6909-01	KIF21A	ENST00000547108.1	chr12	39713791:39713815:39715149:39716684:39719640:39719695,	39715150	39716684	39716675	39716675	Nonsense_Mutation	T	A	p.R1156X
DLBC	TCGA-FF-A7CW-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83352779:83352856:83357044:83357206:83359506:83359665,	83357045	83357206	83357092	83357092	Nonsense_Mutation	C	A	p.G577X
DLBC	TCGA-FA-A6HN-01	ICOSLG	ENST00000344330.4,ENST00000407780.3,ENST00000400379.3	chr21	45655154:45655445:45656749:45657100:45658330:45658371,	45656750	45657100	45656994	45656994	Nonsense_Mutation	C	T	p.W54X
DLBC	TCGA-FA-A6HN-01	HNRNPD	ENST00000507010.1	chr4	83292680:83292737:83294598:83294890:83295271:83295297,	83294599	83294890	83294756	83294756	Nonsense_Mutation	G	A	p.Q26X
DLBC	TCGA-FA-A6HN-01	HNRNPD	ENST00000503822.1	chr4	83280721:83280792:83294598:83294930:83295271:83295297,	83294599	83294930	83294756	83294756	Nonsense_Mutation	G	A	p.Q26X
DLBC	TCGA-GS-A9TQ-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10091145:10091189:10094070:10094181:10101977:10102087,	10094071	10094181	10094085	10094085	Nonsense_Mutation	T	G	p.Y520X
DLBC	TCGA-FF-A7CR-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4718297:4718485:4722236:4722375:4723047:4723102,	4722237	4722375	4722294	4722294	Nonsense_Mutation	C	T	p.R1000X
DLBC	TCGA-FF-A7CR-01	ADCK1	ENST00000556560.1,ENST00000555217.1,ENST00000341211.5,ENST00000238561.5	chr14	78390799:78390949:78392106:78392304:78397860:78398054,	78392107	78392304	78392248	78392248	Nonsense_Mutation	C	T	p.R384X
DLBC	TCGA-G8-6907-01	TTLL3	ENST00000547186.1,ENST00000430793.1,ENST00000483051.1,ENST00000426895.4	chr3	9870643:9871079:9874787:9874929:9876364:9876591,	9874788	9874929	9874914	9874914	Nonsense_Mutation	C	T	p.R704X
DLBC	TCGA-G8-6907-01	LMTK3	ENST00000270238.3	chr19	49013279:49013430:49013715:49013849:49014757:49014870,	49013716	49013849	49013809	49013809	Nonsense_Mutation	G	T	p.Y68X
DLBC	TCGA-GS-A9TU-01	CASC1	ENST00000395990.2,ENST00000395987.3,ENST00000354189.5,ENST00000537577.1,ENST00000557684.1,ENST00000545133.1,ENST00000554533.1,ENST00000320267.9	chr12	25276144:25276220:25297298:25297611:25299934:25300038,	25297299	25297611	25297343	25297343	Nonsense_Mutation	C	A	p.E378X
DLBC	TCGA-GS-A9TU-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30747520:30747715:30747861:30747945:30748369:30751449,	30747862	30747945	30747922	30747922	Nonsense_Mutation	C	T	p.R2329X
DLBC	TCGA-G8-6326-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911227	29911227	Nonsense_Mutation	G	T	p.E176X
DLBC	TCGA-FF-8042-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2,ENST00000529046.1	chr1	115276389:115276478:115276609:115276738:115277062:115277144,	115276610	115276738	115276720	115276720	Nonsense_Mutation	C	A	p.E247X
DLBC	TCGA-FF-8042-01	SEPT6	ENST00000489216.1,ENST00000394617.2,ENST00000394610.1,ENST00000460411.1,ENST00000360156.7,ENST00000354416.3,ENST00000343984.5,ENST00000394616.4,ENST00000354228.4	chrX	118786816:118787003:118797444:118797640:118809516:118809631,	118797445	118797640	118797638	118797638	Nonsense_Mutation	C	A	p.E50X
DLBC	TCGA-FF-8041-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044441	108044441	Nonsense_Mutation	G	A	p.Q424X
DLBC	TCGA-FF-8041-01	UBE2A	ENST00000371558.2	chrX	118709337:118709363:118715469:118715559:118716550:118716639,	118715470	118715559	118715490	118715490	Nonsense_Mutation	G	T	p.E58X
DLBC	TCGA-G8-6906-01	MAP4K1	ENST00000589130.1,ENST00000586296.1,ENST00000396857.2,ENST00000591517.1	chr19	39100548:39100665:39101690:39101772:39101882:39101945,	39101691	39101772	39101772	39101772	Nonsense_Mutation	C	T	p.W243X
DLBC	TCGA-G8-6906-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54319086:54319300:54324819:54324957:54325468:54325569,	54324820	54324957	54324914	54324914	Nonsense_Mutation	C	T	p.R532X
DLBC	TCGA-G8-6906-01	TNFRSF14	ENST00000463835.1	chr1	2492120:2492153:2492932:2493254:2494303:2494335,	2492933	2493254	2493168	2493168	Nonsense_Mutation	G	A	p.W203X
DLBC	TCGA-G8-6906-01	TNFRSF14	ENST00000475523.1,ENST00000466750.1,ENST00000355716.4	chr1	2492120:2492153:2493111:2493254:2494303:2494335,	2493112	2493254	2493168	2493168	Nonsense_Mutation	G	A	p.W203X
DLBC	TCGA-G8-6906-01	ALDH1A3	ENST00000329841.5,ENST00000561338.1	chr15	101427776:101427917:101432714:101432844:101433149:101433192,	101432715	101432844	101432798	101432798	Nonsense_Mutation	C	G	p.Y143X
DLBC	TCGA-G8-6906-01	ZC3HC1	ENST00000311873.5,ENST00000467642.1,ENST00000481503.1,ENST00000358303.4	chr7	129662158:129662365:129663350:129663563:129664102:129664217,	129663351	129663563	129663533	129663533	Nonsense_Mutation	G	A	p.R351X
DLBC	TCGA-GR-A4D5-01	DGKI	ENST00000446122.1,ENST00000460662.2	chr7	137172355:137172435:137206611:137206712:137237114:137237314,	137206612	137206712	137206621	137206621	Nonsense_Mutation	G	A	p.R747X
DLBC	TCGA-GR-7353-01	CCDC66	ENST00000422222.1,ENST00000436465.2,ENST00000484623.1,ENST00000394672.3,ENST00000326595.7,ENST00000468108.1,ENST00000341455.6	chr3	56627739:56627769:56627971:56628056:56647616:56647778,	56627972	56628056	56628033	56628033	Nonsense_Mutation	C	T	p.R461X
DLBC	TCGA-GR-7353-01	ATXN2	ENST00000550889.1,ENST00000482777.1,ENST00000535949.1	chr12	111895017:111895163:111907911:111908044:111908361:111908364,	111907912	111908044	111907956	111907956	Nonsense_Mutation	G	C	p.S1091X
DLBC	TCGA-GR-7353-01	USP25	ENST00000547201.1,ENST00000400183.2,ENST00000285679.6,ENST00000285681.2	chr21	17177439:17177577:17181127:17181204:17183455:17183529,	17181128	17181204	17181168	17181168	Nonsense_Mutation	T	G	p.L274X
DLBC	TCGA-GR-7353-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561313	32561313	Nonsense_Mutation	C	T	p.R480X
DLBC	TCGA-VB-A8QN-01	PTPN6	ENST00000540740.1,ENST00000545153.1	chr12	7055872:7055902:7061074:7061340:7063967:7064010,7060771:7060894:7061074:7061340:7063967:7064010,	7061075	7061340	7061261	7061261	Nonsense_Mutation	C	T	p.Q85X
DLBC	TCGA-VB-A8QN-01	PTPN6	ENST00000399448.1,ENST00000541698.1,ENST00000538318.1,ENST00000318974.9,ENST00000538715.1,ENST00000456013.1,ENST00000539365.1	chr12	7055872:7055902:7061145:7061340:7063967:7064010,7060771:7060894:7061145:7061340:7063967:7064010,	7061146	7061340	7061261	7061261	Nonsense_Mutation	C	T	p.Q85X
DLBC	TCGA-VB-A8QN-01	PTPN6	ENST00000535462.1	chr12	7060771:7060894:7061179:7061340:7063967:7064010,	7061180	7061340	7061261	7061261	Nonsense_Mutation	C	T	p.Q85X
DLBC	TCGA-VB-A8QN-01	CABIN1	ENST00000398319.2,ENST00000445422.1,ENST00000263119.5,ENST00000454754.1	chr22	24445552:24445682:24447286:24447436:24451335:24451622,	24447287	24447436	24447360	24447360	Nonsense_Mutation	C	T	p.R244X
DLBC	TCGA-VB-A8QN-01	VWDE	ENST00000452576.2,ENST00000521169.1,ENST00000275358.3	chr7	12379947:12380043:12381684:12381780:12382708:12382804,	12381685	12381780	12381703	12381703	Nonsense_Mutation	C	A	p.G1418X
DLBC	TCGA-VB-A8QN-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324576	31324576	Nonsense_Mutation	G	A	p.Q78X
DLBC	TCGA-VB-A8QN-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324576	31324576	Nonsense_Mutation	G	A	p.Q78X
DLBC	TCGA-VB-A8QN-01	GHR	ENST00000230882.4	chr5	42629139:42629205:42688991:42689121:42695018:42695191,	42688992	42689121	42689036	42689036	Nonsense_Mutation	C	T	p.R68X
DLBC	TCGA-FF-A7CX-01	WDPCP	ENST00000409562.3,ENST00000272321.7,ENST00000493315.1,ENST00000398544.3,ENST00000409120.1,ENST00000409835.1,ENST00000409199.1,ENST00000417238.1	chr2	63631182:63631792:63660878:63661070:63664554:63664688,	63660879	63661070	63661025	63661025	Nonsense_Mutation	G	A	p.R227X
DLBC	TCGA-FA-A86F-01	ITCH	ENST00000374864.4,ENST00000262650.6,ENST00000486883.1	chr20	32981596:32981687:32996456:32996598:33000320:33000445,	32996457	32996598	32996580	32996580	Nonsense_Mutation	G	A	p.W65X
DLBC	TCGA-GR-7351-01	TTLL3	ENST00000547186.1,ENST00000430793.1,ENST00000483051.1,ENST00000426895.4	chr3	9870643:9871079:9874787:9874929:9876364:9876591,	9874788	9874929	9874914	9874914	Nonsense_Mutation	C	T	p.R704X
DLBC	TCGA-GR-7351-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11000862	11000862	Nonsense_Mutation	G	T	p.E505X
DLBC	TCGA-GR-7351-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11000862	11000862	Nonsense_Mutation	G	T	p.E505X
DLBC	TCGA-GR-7351-01	KRT7	ENST00000331817.5	chr12	52635328:52635420:52636795:52636921:52639195:52639266,	52636796	52636921	52636919	52636919	Nonsense_Mutation	C	T	p.Q328X
DLBC	TCGA-GR-7351-01	ADAMTS18	ENST00000282849.5	chr16	77323160:77323308:77325162:77325375:77326972:77327155,	77325163	77325375	77325285	77325285	Nonsense_Mutation	G	A	p.R1094X
DLBC	TCGA-GR-7351-01	GMPS	ENST00000496455.2,ENST00000295920.7	chr3	155632207:155632359:155633807:155633981:155637021:155637127,	155633808	155633981	155633817	155633817	Nonsense_Mutation	G	T	p.E350X
DLBC	TCGA-G8-6325-01	NUBPL	ENST00000536705.1,ENST00000550649.1,ENST00000281081.7,ENST00000547839.1,ENST00000552888.1,ENST00000418681.2	chr14	32315676:32315797:32319324:32319407:32328323:32328330,	32319325	32319407	32319354	32319354	Nonsense_Mutation	G	T	p.E282X
DLBC	TCGA-G8-6325-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000313382.9,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144857639:144857728:144859758:144859998:144863317:144863414,	144859759	144859998	144859879	144859879	Nonsense_Mutation	G	A	p.R2069X
DLBC	TCGA-FA-A7Q1-01	COG4	ENST00000323786.5,ENST00000565715.1,ENST00000526700.1,ENST00000482252.1,ENST00000564415.1,ENST00000530314.1	chr16	70514769:70515047:70515261:70515390:70515666:70515768,	70515262	70515390	70515315	70515315	Nonsense_Mutation	G	A	p.R728X
DLBC	TCGA-FA-A7Q1-01	MYO1E	ENST00000559489.1,ENST00000288235.4	chr15	59506426:59506513:59506838:59506919:59510089:59510286,	59506839	59506919	59506886	59506886	Nonsense_Mutation	C	A	p.E381X
DLBC	TCGA-FA-A7Q1-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677595	73677595	Nonsense_Mutation	C	A	p.S1313X
DLBC	TCGA-GS-A9TW-01	CLEC7A	ENST00000298523.5	chr12	10275843:10275962:10277895:10278047:10282578:10282681,10271147:10271189:10277895:10278047:10280345:10280444,	10277896	10278047	10278006	10278006	Nonsense_Mutation	C	A	p.E128X
DLBC	TCGA-GS-A9TW-01	FRMD4B	ENST00000398540.3,ENST00000478263.1,ENST00000542259.1	chr3	69231748:69231868:69236920:69237068:69239046:69239100,	69236921	69237068	69237039	69237039	Nonsense_Mutation	G	A	p.R601X
DLBC	TCGA-GS-A9TW-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038798	72038798	Nonsense_Mutation	G	A	p.Q380X
DLBC	TCGA-GS-A9TW-01	AVIL	ENST00000257861.3,ENST00000550537.1,ENST00000537081.1,ENST00000549851.1	chr12	58197078:58197174:58197306:58197452:58200142:58200272,	58197307	58197452	58197374	58197374	Nonsense_Mutation	C	A	p.E584X
DLBC	TCGA-GS-A9TW-01	KCTD20	ENST00000536244.1,ENST00000265344.4,ENST00000373731.2	chr6	36446897:36447000:36447367:36447488:36449338:36449536,	36447368	36447488	36447473	36447473	Nonsense_Mutation	C	T	p.R215X
DLBC	TCGA-GS-A9TW-01	CHEK2	ENST00000439200.1,ENST00000382580.2	chr22	29121230:29121355:29130390:29130715:29137756:29137771,29126443:29126536:29130390:29130715:29137756:29137771,	29130391	29130715	29130412	29130412	Nonsense_Mutation	G	A	p.Q100X
DLBC	TCGA-GS-A9TW-01	PINK1	ENST00000492302.1	chr1	20972052:20972216:20974997:20975724:20976926:20977809,	20974998	20975724	20975644	20975644	Nonsense_Mutation	C	T	p.Q470X
DLBC	TCGA-GS-A9TW-01	PINK1	ENST00000400490.2,ENST00000321556.4	chr1	20974997:20975125:20975487:20975724:20976926:20977809,	20975488	20975724	20975644	20975644	Nonsense_Mutation	C	T	p.Q470X
DLBC	TCGA-FF-8047-01	ABLIM1	ENST00000481974.1,ENST00000533213.2,ENST00000369252.4,ENST00000369256.2,ENST00000392955.3,ENST00000277895.5	chr10	116307408:116307535:116331055:116331165:116335174:116335296,	116331056	116331165	116331143	116331143	Nonsense_Mutation	G	A	p.R196X
DLBC	TCGA-GS-A9TZ-01	CASD1	ENST00000297273.4	chr7	94168278:94168368:94173722:94173842:94174856:94175013,	94173723	94173842	94173774	94173774	Nonsense_Mutation	C	T	p.Q470X
DLBC	TCGA-GS-A9TZ-01	TMEM135	ENST00000525018.1,ENST00000340353.7,ENST00000305494.5,ENST00000355734.4,ENST00000529023.1	chr11	86778735:86778863:86782564:86782657:86802403:86802437,	86782565	86782657	86782566	86782566	Nonsense_Mutation	A	T	p.K91X
DLBC	TCGA-GS-A9TZ-01	CSNK1G3	ENST00000345990.4,ENST00000395411.1	chr5	122847953:122848264:122881110:122881535:122888800:122888841,	122881111	122881535	122881389	122881389	Nonsense_Mutation	C	G	p.S11X
DLBC	TCGA-GS-A9TZ-01	SLC25A13	ENST00000416240.2,ENST00000265631.5	chr7	95838149:95838289:95864113:95864229:95906507:95906650,	95864114	95864229	95864216	95864216	Nonsense_Mutation	G	A	p.Q76X
DLBC	TCGA-FF-8061-01	CRMP1	ENST00000397890.2	chr4	5862752:5862937:5868394:5868483:5889954:5890082,	5868395	5868483	5868477	5868477	Nonsense_Mutation	G	A	p.R130X
DLBC	TCGA-FF-8061-01	NFKBIA	ENST00000555371.1	chr14	35871131:35871266:35871599:35872065:35872355:35872444,	35871600	35872065	35871695	35871695	Nonsense_Mutation	G	A	p.Q271X
DLBC	TCGA-FA-8693-01	CD274	ENST00000498261.1,ENST00000381577.3	chr9	5456099:5456165:5457078:5457420:5462833:5463121,	5457079	5457420	5457196	5457196	Nonsense_Mutation	G	A	p.W57X
DLBC	TCGA-FA-8693-01	BIRC6	ENST00000421745.2	chr2	32718606:32718734:32724613:32725176:32726779:32726955,	32724614	32725176	32724813	32724813	Nonsense_Mutation	C	T	p.R2890X
CHOL	TCGA-ZH-A8Y4-01	KIF3A	ENST00000403231.1,ENST00000378735.1	chr5	132062045:132062190:132069896:132070170:132073105:132073111,	132069897	132070170	132070088	132070088	Nonsense_Mutation	G	T	p.S30X
CHOL	TCGA-ZH-A8Y4-01	TRAT1	ENST00000493604.1,ENST00000478830.1	chr3	108541618:108541781:108549516:108549627:108557780:108557814,	108549517	108549627	108549621	108549621	Nonsense_Mutation	C	T	p.R38X
CHOL	TCGA-ZH-A8Y4-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662939	52662939	Nonsense_Mutation	G	A	p.R472X
CHOL	TCGA-4G-AAZO-01	VPS45	ENST00000535106.1,ENST00000369130.3,ENST00000369128.5,ENST00000419023.1	chr1	150053965:150054079:150054799:150054967:150064030:150064080,	150054800	150054967	150054917	150054917	Nonsense_Mutation	G	T	p.E352X
CHOL	TCGA-4G-AAZO-01	SETD1B	ENST00000267197.5,ENST00000542440.1,ENST00000604567.1	chr12	122255704:122255810:122257309:122257801:122260395:122261655,	122257310	122257801	122257702	122257702	Nonsense_Mutation	G	T	p.E1228X
CHOL	TCGA-W5-AA2Q-01	SOGA1	ENST00000357779.3,ENST00000237536.4,ENST00000279034.6	chr20	35443528:35444710:35445809:35445872:35457456:35457615,	35445810	35445872	35445812	35445812	Nonsense_Mutation	G	A	p.Q378X
CHOL	TCGA-W5-AA2Q-01	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127915867	127915867	Nonsense_Mutation	C	T	p.W242X
CHOL	TCGA-W5-AA2Q-01	MGRN1	ENST00000399577.5,ENST00000536343.1,ENST00000415496.1,ENST00000586183.1,ENST00000585676.1,ENST00000592256.1,ENST00000262370.7,ENST00000587747.1,ENST00000588994.1	chr16	4732823:4732947:4733224:4733270:4733843:4733873,	4733225	4733270	4733264	4733264	Nonsense_Mutation	C	T	p.Q508X
CHOL	TCGA-W5-AA2O-01	TSNARE1	ENST00000307180.3	chr8	143413114:143413192:143435997:143436124:143484464:143484529,143427103:143427253:143435997:143436124:143484464:143484529,	143435998	143436124	143436077	143436077	Nonsense_Mutation	G	T	p.Y3X
CHOL	TCGA-W5-AA2O-01	PDCL	ENST00000259467.4	chr9	125585294:125585476:125588894:125589071:125590749:125590910,	125588895	125589071	125588973	125588973	Nonsense_Mutation	G	A	p.R32X
CHOL	TCGA-ZH-A8Y6-01	PIK3C3	ENST00000593098.1,ENST00000262039.4,ENST00000398870.3	chr18	39623696:39623781:39629494:39629569:39637846:39638015,	39629495	39629569	39629497	39629497	Nonsense_Mutation	G	T	p.G731X
CHOL	TCGA-ZH-A8Y6-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000523512.1,ENST00000518929.1,ENST00000432313.2,ENST00000523419.1,ENST00000522406.1	chr17	67211955:67212141:67212357:67212499:67215685:67215912,	67212358	67212499	67212428	67212428	Nonsense_Mutation	G	T	p.S201X
CHOL	TCGA-W5-AA2G-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462176	16462176	Nonsense_Mutation	T	A	p.K468X
CHOL	TCGA-W5-AA2G-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397042.3	chr20	37186937:37187096:37191174:37191340:37193998:37194121,	37191175	37191340	37191223	37191223	Nonsense_Mutation	G	T	p.E1194X
CHOL	TCGA-W5-AA2G-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000584446.1,ENST00000580732.2,ENST00000578368.1,ENST00000400483.4,ENST00000431264.1	chr18	18975345:18975522:18981110:18981287:18983832:18983955,	18981111	18981287	18981119	18981119	Nonsense_Mutation	G	T	p.G181X
CHOL	TCGA-W5-AA2G-01	GHDC	ENST00000587427.1,ENST00000593209.1,ENST00000414034.3,ENST00000301671.8,ENST00000436923.2	chr17	40343035:40343228:40344258:40344760:40344923:40345045,	40344259	40344760	40344493	40344493	Nonsense_Mutation	C	A	p.E219X
CHOL	TCGA-ZD-A8I3-01	RGS20	ENST00000276500.4	chr8	54791817:54792162:54852135:54852284:54859224:54859308,54792559:54792846:54852135:54852284:54859224:54859308,54793460:54793644:54852135:54852284:54859224:54859308,	54852136	54852284	54852270	54852270	Nonsense_Mutation	T	A	p.C215X
CHOL	TCGA-W5-AA2I-01	PKNOX2	ENST00000526955.1	chr11	125267769:125267958:125279934:125281761:125298907:125298984,	125279935	125281761	125280125	125280125	Nonsense_Mutation	G	T	p.G208X
CHOL	TCGA-W5-AA2X-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659315	43659315	Nonsense_Mutation	G	T	p.E328X
CHOL	TCGA-W5-AA2X-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92470476	92470476	Nonsense_Mutation	T	A	p.K1282X
CHOL	TCGA-W5-AA2X-01	STIP1	ENST00000537479.1,ENST00000305218.4,ENST00000544739.1,ENST00000538497.1,ENST00000358794.5,ENST00000538945.1	chr11	63964742:63964869:63964964:63965067:63965325:63965446,	63964965	63965067	63965024	63965024	Nonsense_Mutation	G	T	p.E287X
CHOL	TCGA-W5-AA2X-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903817	5903817	Nonsense_Mutation	G	T	p.E343X
CHOL	TCGA-W5-AA2Z-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232701	132232701	Nonsense_Mutation	C	A	p.E541X
CHOL	TCGA-W5-AA2R-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117657879:117658074:117660519:117660668:117662820:117662942,	117660520	117660668	117660627	117660627	Nonsense_Mutation	G	A	p.Q1324X
CHOL	TCGA-W5-AA2R-01	XPO5	ENST00000496341.2,ENST00000265351.7	chr6	43517629:43517671:43519034:43519190:43521109:43521240,	43519035	43519190	43519110	43519110	Nonsense_Mutation	G	T	p.C551X
CHOL	TCGA-3X-AAV9-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698243	2698243	Nonsense_Mutation	C	T	p.Q875X
CHOL	TCGA-3X-AAV9-01	TARBP1	ENST00000040877.1	chr1	234565832:234566047:234569155:234569317:234573020:234573118,	234569156	234569317	234569297	234569297	Nonsense_Mutation	G	T	p.C751X
CHOL	TCGA-3X-AAVA-01	KREMEN2	ENST00000303746.5,ENST00000319500.6,ENST00000575769.1,ENST00000572045.1	chr16	3016140:3016232:3016325:3016450:3016642:3016796,	3016326	3016450	3016345	3016345	Nonsense_Mutation	C	A	p.C127X
CHOL	TCGA-3X-AAVA-01	AP3M2	ENST00000521280.1	chr8	42010602:42010623:42015458:42015630:42019798:42019936,	42015459	42015630	42015516	42015516	Nonsense_Mutation	G	T	p.E111X
CHOL	TCGA-W5-AA38-01	SERPINB13	ENST00000269489.5,ENST00000344731.5	chr18	61259581:61259710:61260087:61260205:61261259:61261472,61259581:61259710:61260087:61260205:61261588:61261731,	61260088	61260205	61260205	61260205	Nonsense_Mutation	G	T	p.E158X
CHOL	TCGA-W5-AA38-01	VPS52	ENST00000464425.1	chr6	33236275:33236426:33236790:33236995:33237266:33237334,	33236791	33236995	33236870	33236870	Nonsense_Mutation	G	A	p.R157X
CHOL	TCGA-W5-AA38-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000463486.1,ENST00000478934.1,ENST00000445902.2	chr6	33236275:33236426:33236790:33236966:33237266:33237334,	33236791	33236966	33236870	33236870	Nonsense_Mutation	G	A	p.R157X
CHOL	TCGA-W5-AA38-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
CHOL	TCGA-W5-AA38-01	EIF4ENIF1	ENST00000397525.1,ENST00000397523.1,ENST00000330125.5	chr22	31851837:31851973:31854460:31854636:31858917:31859119,	31854461	31854636	31854517	31854517	Nonsense_Mutation	C	A	p.G303X
CHOL	TCGA-W5-AA2U-01	WDR26	ENST00000295024.6,ENST00000414423.2	chr1	224592131:224592272:224599128:224599267:224605961:224606074,	224599129	224599267	224599141	224599141	Nonsense_Mutation	C	T	p.W382X
CHOL	TCGA-W5-AA2U-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729730	24729730	Nonsense_Mutation	G	T	p.S228X
CHOL	TCGA-W5-AA2U-01	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394780	86394780	Nonsense_Mutation	G	T	p.E107X
CHOL	TCGA-W5-AA2U-01	DNAJA3	ENST00000574895.1,ENST00000573120.1,ENST00000355296.4	chr16	4476048:4476093:4484384:4484518:4487402:4487486,	4484385	4484518	4484495	4484495	Nonsense_Mutation	G	T	p.E108X
CHOL	TCGA-W5-AA2U-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10197124:10197263:10204997:10205097:10207020:10207148,	10204998	10205097	10205034	10205034	Nonsense_Mutation	G	A	p.W800X
CHOL	TCGA-ZH-A8Y2-01	XPNPEP2	ENST00000371106.3	chrX	128880570:128880657:128881582:128881729:128884443:128884545,	128881583	128881729	128881717	128881717	Nonsense_Mutation	G	T	p.E209X
CHOL	TCGA-ZH-A8Y2-01	SMARCD1	ENST00000551966.1	chr12	50481145:50481268:50482303:50482420:50483666:50483768,50480538:50480661:50482303:50482420:50483666:50483768,	50482304	50482420	50482343	50482343	Nonsense_Mutation	A	T	p.K232X
CHOL	TCGA-3X-AAVB-01	SYT9	ENST00000318881.6	chr11	7324269:7324621:7334625:7335172:7437272:7437393,	7334626	7335172	7334708	7334708	Nonsense_Mutation	G	T	p.G194X
CHOL	TCGA-3X-AAVE-01	PSMA5	ENST00000484563.1	chr1	109957858:109957985:109964481:109964548:109968923:109968973,	109964482	109964548	109964511	109964511	Nonsense_Mutation	G	A	p.Q23X
CHOL	TCGA-3X-AAVE-01	SNX29	ENST00000564111.1,ENST00000566228.1	chr16	12121176:12121301:12136753:12136934:12140240:12140311,	12136754	12136934	12136879	12136879	Nonsense_Mutation	G	T	p.E125X
CHOL	TCGA-W5-AA2H-01	TRAF5	ENST00000488428.1	chr1	211529708:211529810:211533223:211533418:211534043:211534121,	211533224	211533418	211533365	211533365	Nonsense_Mutation	C	T	p.R164X
CHOL	TCGA-W5-AA2H-01	TRAF5	ENST00000336184.2,ENST00000261464.5,ENST00000367004.3	chr1	211529708:211529810:211533253:211533418:211534043:211534121,	211533254	211533418	211533365	211533365	Nonsense_Mutation	C	T	p.R164X
CHOL	TCGA-W6-AA0S-01	INO80	ENST00000401393.3,ENST00000557849.1,ENST00000361937.3	chr15	41289774:41289799:41297790:41297885:41308285:41308413,	41297791	41297885	41297827	41297827	Nonsense_Mutation	G	T	p.S1154X
CHOL	TCGA-YR-A95A-01	KCNMA1	ENST00000406533.3,ENST00000372408.2,ENST00000372421.5,ENST00000354353.5,ENST00000372443.1,ENST00000286627.5,ENST00000286628.8,ENST00000372440.1,ENST00000457953.1,ENST00000372437.1,ENST00000372403.4,ENST00000434208.1,ENST00000404771.3,ENST00000604624.1,ENST00000404857.1	chr10	78674693:78674807:78704530:78704723:78708899:78709124,	78704531	78704723	78704653	78704653	Nonsense_Mutation	G	T	p.S927X
CHOL	TCGA-YR-A95A-01	KRT8	ENST00000546826.1,ENST00000548998.1,ENST00000552150.1,ENST00000293308.6,ENST00000546897.1,ENST00000547031.1,ENST00000552551.1,ENST00000549176.1	chr12	53293791:53293849:53294371:53294467:53295647:53295731,53293815:53293849:53294371:53294467:53294942:53295003,	53294372	53294467	53294404	53294404	Nonsense_Mutation	C	A	p.E248X
CHOL	TCGA-YR-A95A-01	KRT8	ENST00000550170.1	chr12	53293791:53293849:53294371:53295003:53295647:53295731,	53294372	53295003	53294404	53294404	Nonsense_Mutation	C	A	p.E248X
CHOL	TCGA-YR-A95A-01	DENND3	ENST00000520986.1	chr8	142148120:142148236:142160932:142161052:142161717:142161936,	142160933	142161052	142160984	142160984	Nonsense_Mutation	G	T	p.E183X
CHOL	TCGA-YR-A95A-01	TXNDC11	ENST00000283033.5,ENST00000356957.3	chr16	11782158:11782301:11785145:11785938:11791980:11792181,	11785146	11785938	11785750	11785750	Nonsense_Mutation	C	T	p.W432X
CHOL	TCGA-W5-AA31-01	BAP1	ENST00000460680.1	chr3	52440268:52440392:52440844:52440923:52441189:52441332,	52440845	52440923	52440916	52440916	Nonsense_Mutation	C	T	p.W196X
CHOL	TCGA-W5-AA31-01	CEP290	ENST00000309041.7,ENST00000552810.1,ENST00000547926.2	chr12	88524941:88524995:88530419:88530563:88532921:88532968,	88530420	88530563	88530507	88530507	Nonsense_Mutation	G	T	p.C118X
CHOL	TCGA-ZH-A8Y1-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678790	52678790	Nonsense_Mutation	T	A	p.K277X
CHOL	TCGA-ZH-A8Y8-01	KIAA1841	ENST00000453873.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61315492:61315603:61319598:61319722:61324834:61324987,	61319599	61319722	61319611	61319611	Nonsense_Mutation	G	A	p.W367X
CHOL	TCGA-ZH-A8Y8-01	ARHGAP44	ENST00000544416.2,ENST00000262444.9,ENST00000340825.3,ENST00000580768.1,ENST00000379672.5	chr17	12847385:12847513:12852456:12852568:12852965:12853047,	12852457	12852568	12852466	12852466	Nonsense_Mutation	C	T	p.R291X
CHOL	TCGA-ZH-A8Y8-01	CCDC66	ENST00000436465.2,ENST00000476142.1,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000480884.1,ENST00000341455.6	chr3	56653298:56653555:56653804:56653929:56655559:56655790,	56653805	56653929	56653888	56653888	Nonsense_Mutation	C	T	p.R907X
CHOL	TCGA-W5-AA36-01	TTC19	ENST00000261647.5,ENST00000486880.2,ENST00000497842.2	chr17	15903431:15903559:15905228:15905339:15906106:15906145,	15905229	15905339	15905253	15905253	Nonsense_Mutation	G	T	p.E113X
CHOL	TCGA-W5-AA36-01	ZNF326	ENST00000370447.3	chr1	90470691:90470803:90473170:90473309:90475646:90475845,	90473171	90473309	90473298	90473298	Nonsense_Mutation	C	T	p.R202X
CHOL	TCGA-W5-AA36-01	ZNF326	ENST00000340281.4	chr1	90470691:90470803:90472903:90473309:90475646:90475845,	90472904	90473309	90473298	90473298	Nonsense_Mutation	C	T	p.R202X
CHOL	TCGA-W5-AA36-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450665	55450665	Nonsense_Mutation	C	A	p.E508X
CHOL	TCGA-W5-AA36-01	MEIS1	ENST00000409517.1,ENST00000272369.9,ENST00000495021.2	chr2	66795798:66795888:66796181:66796277:66798377:66798383,	66796182	66796277	66796228	66796228	Nonsense_Mutation	G	A	p.W387X
CHOL	TCGA-W5-AA39-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
CHOL	TCGA-W5-AA39-01	MLF1	ENST00000478894.2,ENST00000498592.1,ENST00000482628.1,ENST00000355893.5,ENST00000466246.1,ENST00000495452.1,ENST00000477042.1,ENST00000471745.1,ENST00000359117.5,ENST00000484955.1,ENST00000392822.3,ENST00000497004.1,ENST00000491767.1	chr3	158314657:158314734:158315868:158315997:158317802:158317962,	158315869	158315997	158315944	158315944	Nonsense_Mutation	G	T	p.E150X
CHOL	TCGA-W5-AA39-01	ATAD2B	ENST00000439915.1	chr2	24111219:24111269:24118688:24118840:24149424:24149935,	24118689	24118840	24118774	24118774	Nonsense_Mutation	G	A	p.Q95X
CHOL	TCGA-W5-AA39-01	WBP2	ENST00000593002.1	chr17	73845684:73845820:73847648:73847757:73851260:73851403,73845684:73845820:73847648:73847757:73851319:73851387,73845684:73845820:73847648:73847757:73851204:73851285,	73847649	73847757	73847681	73847681	Nonsense_Mutation	T	A	p.K46X
CHOL	TCGA-W5-AA39-01	MARCH6	ENST00000511802.1,ENST00000449913.2,ENST00000510792.1,ENST00000503788.1,ENST00000274140.5	chr5	10402495:10402564:10402644:10402719:10403518:10403653,	10402645	10402719	10402698	10402698	Nonsense_Mutation	G	A	p.W392X
CHOL	TCGA-W5-AA39-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220580	29220580	Nonsense_Mutation	T	A	p.L1570X
CHOL	TCGA-W5-AA39-01	STX3	ENST00000535361.1,ENST00000530498.1,ENST00000529177.1,ENST00000337979.4,ENST00000300150.7	chr11	59540689:59540767:59554509:59554609:59556345:59556420,	59554510	59554609	59554567	59554567	Nonsense_Mutation	A	T	p.K58X
CHOL	TCGA-W5-AA30-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28X
CHOL	TCGA-W5-AA30-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93221687:93221837:93226287:93226626:93236240:93236357,	93226288	93226626	93226362	93226362	Nonsense_Mutation	C	A	p.E394X
CHOL	TCGA-3X-AAVC-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28X
CHOL	TCGA-ZU-A8S4-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67700164	67700164	Nonsense_Mutation	C	T	p.Q906X
CHOL	TCGA-ZU-A8S4-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41084301:41084390:41088505:41088662:41088819:41089032,	41088506	41088662	41088540	41088540	Nonsense_Mutation	C	T	p.R2366X
CHOL	TCGA-WD-A7RX-01	DHDH	ENST00000520557.1	chr19	49445696:49445821:49447613:49447764:49448080:49448216,49442705:49442958:49447613:49447764:49448080:49448216,	49447614	49447764	49447641	49447641	Nonsense_Mutation	G	T	p.E258X
ACC	TCGA-PK-A5HB-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Nonsense_Mutation	A	-	p.C230X
ACC	TCGA-PK-A5HB-01	GSN	ENST00000432226.1,ENST00000341272.2,ENST00000373823.3	chr9	124043788:124043840:124064240:124064445:124065188:124065343,	124064241	124064445	124064309	124064309	Nonsense_Mutation	G	A	p.W20X
ACC	TCGA-OR-A5J5-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661638	40661638	Nonsense_Mutation	A	-	p.S468X
ACC	TCGA-OR-A5J5-01	SMARCD3	ENST00000262188.8,ENST00000356800.2,ENST00000485592.1,ENST00000392811.2	chr7	150937510:150937608:150938577:150938739:150938962:150939064,	150938578	150938739	150938652	150938652	Nonsense_Mutation	G	A	p.Q276X
ACC	TCGA-OR-A5KB-01	INSC	ENST00000379554.3,ENST00000424273.1,ENST00000525218.1,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15170675:15170776:15197286:15197632:15198656:15198709,	15197287	15197632	15197588	15197588	Nonsense_Mutation	G	T	p.E120X
ACC	TCGA-OR-A5KB-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331586	20331586	Nonsense_Mutation	C	A	p.E139X
ACC	TCGA-OR-A5KB-01	PDE4DIP	ENST00000530062.1	chr1	144854164:144854211:144854517:144854656:144855739:144855883,144852393:144852499:144854517:144854656:144855739:144855883,	144854518	144854656	144854656	144854656	Nonsense_Mutation	C	A	p.G2166X
ACC	TCGA-OR-A5KB-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107715	168107715	Nonsense_Mutation	T	G	p.Y3049X
ACC	TCGA-OR-A5K8-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288624	33288624	Nonsense_Mutation	G	A	p.Q235X
ACC	TCGA-OR-A5JA-01	TAF1	ENST00000423759.1,ENST00000276072.3	chrX	70595016:70595136:70596799:70597041:70597452:70597671,	70596800	70597041	70596893	70596893	Nonsense_Mutation	C	A	p.S188X
ACC	TCGA-OR-A5JA-01	TAF1	ENST00000373790.4,ENST00000449580.1	chrX	70595016:70595136:70596862:70597041:70597452:70597671,	70596863	70597041	70596893	70596893	Nonsense_Mutation	C	A	p.S188X
ACC	TCGA-OR-A5LM-01	BRF2	ENST00000220659.6	chr8	37702219:37702731:37704371:37704693:37706113:37706173,	37704372	37704693	37704589	37704589	Nonsense_Mutation	G	A	p.R107X
ACC	TCGA-OR-A5LJ-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453329	195453329	Nonsense_Mutation	C	T	p.R413X
ACC	TCGA-OR-A5K5-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998369	144998369	Nonsense_Mutation	T	A	p.K1878X
ACC	TCGA-OR-A5J8-01	PHTF2	ENST00000470215.1,ENST00000307305.8,ENST00000422959.2,ENST00000248550.7,ENST00000416283.2	chr7	77572016:77572103:77578994:77579150:77580933:77581029,	77578995	77579150	77579101	77579101	Nonsense_Mutation	C	A	p.S651X
ACC	TCGA-OR-A5L2-01	PTPN6	ENST00000542277.1,ENST00000543115.1,ENST00000536521.1,ENST00000541698.1,ENST00000318974.9,ENST00000538715.1,ENST00000456013.1	chr12	7055872:7055902:7060771:7060894:7061145:7061340,7055872:7055902:7060771:7060894:7061275:7061340,7060537:7060683:7060771:7060894:7061145:7061340,	7060772	7060894	7060782	7060782	Nonsense_Mutation	C	T	p.R7X
ACC	TCGA-OR-A5L2-01	PTPN6	ENST00000538318.1	chr12	7055872:7055902:7060667:7060894:7061145:7061340,	7060668	7060894	7060782	7060782	Nonsense_Mutation	C	T	p.R7X
ACC	TCGA-OR-A5JB-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145145583:145147595:145153978:145154159:145155867:145157837,	145153979	145154159	145153988	145153988	Nonsense_Mutation	C	A	p.E996X
ACC	TCGA-OR-A5J2-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266091	41266092	Nonsense_Mutation	-	A	p.Y30_L31delinsX
ACC	TCGA-OR-A5K4-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66946406:66946483:66946566:66946794:66947033:66947184,	66946567	66946794	66946627	66946627	Nonsense_Mutation	G	A	p.R311X
ACC	TCGA-OR-A5J4-01	RAD1	ENST00000513914.1	chr5	34911722:34911917:34913574:34913683:34914799:34914906,34911722:34911917:34913574:34913683:34914031:34914131,	34913575	34913683	34913589	34913589	Nonsense_Mutation	G	C	p.S98*
ACC	TCGA-OR-A5J4-01	ETS2	ENST00000360214.3,ENST00000360938.3,ENST00000456966.1	chr21	40186704:40186905:40188931:40189015:40190348:40190570,	40188932	40189015	40188949	40188949	Nonsense_Mutation	G	T	p.E175*
ACC	TCGA-OR-A5J5-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118633920:118634015:118635916:118636063:118638930:118639060,	118635917	118636063	118635947	118635947	Nonsense_Mutation	G	A	p.R206*
ACC	TCGA-OR-A5J5-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000602997.1,ENST00000605781.1,ENST00000380554.3	chr10	5138601:5138769:5139625:5139742:5140993:5141071,	5139626	5139742	5139659	5139659	Nonsense_Mutation	C	T	p.R96*
ACC	TCGA-OR-A5J5-01	SMARCD3	ENST00000262188.8,ENST00000356800.2,ENST00000485592.1,ENST00000392811.2	chr7	150937510:150937608:150938577:150938739:150938962:150939064,	150938578	150938739	150938652	150938652	Nonsense_Mutation	G	A	p.Q276*
ACC	TCGA-OR-A5J5-01	BMS1	ENST00000374518.5	chr10	43282615:43282695:43285770:43285959:43287074:43287217,	43285771	43285959	43285924	43285924	Nonsense_Mutation	C	T	p.R201*
ACC	TCGA-OR-A5J5-01	PHLDB1	ENST00000356063.5,ENST00000527259.1,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118486755:118486926:118495649:118495775:118498020:118498112,	118495650	118495775	118495742	118495742	Nonsense_Mutation	C	T	p.R150*
ACC	TCGA-OR-A5J7-01	ANKRD55	ENST00000341048.4	chr5	55422748:55422933:55439627:55439756:55455659:55455720,	55439628	55439756	55439737	55439737	Nonsense_Mutation	C	T	p.W168*
ACC	TCGA-OR-A5J8-01	PHTF2	ENST00000470215.1,ENST00000307305.8,ENST00000422959.2,ENST00000248550.7,ENST00000416283.2	chr7	77572016:77572103:77578994:77579150:77580933:77581029,	77578995	77579150	77579101	77579101	Nonsense_Mutation	C	A	p.S655*
ACC	TCGA-OR-A5J8-01	SENP6	ENST00000370010.2,ENST00000541192.1,ENST00000370014.3,ENST00000503501.1,ENST00000447266.2	chr6	76423228:76423297:76423390:76423541:76425100:76425593,	76423391	76423541	76423518	76423518	Nonsense_Mutation	C	T	p.Q1036*
ACC	TCGA-OR-A5J8-01	SMARCAL1	ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217329319:217329390:217332666:217332769:217339991:217340174,	217332667	217332769	217332761	217332761	Nonsense_Mutation	G	T	p.E746*
ACC	TCGA-OR-A5J8-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000580732.2	chr18	19034394:19034524:19052991:19053172:19057124:19057317,	19052992	19053172	19053018	19053018	Nonsense_Mutation	G	T	p.E737*
ACC	TCGA-OR-A5JA-01	KCTD13	ENST00000308768.5	chr16	29916332:29916472:29917813:29918429:29922298:29922494,	29917814	29918429	29918291	29918291	Nonsense_Mutation	C	A	p.E298*
ACC	TCGA-OR-A5JA-01	ITGA4	ENST00000397033.2,ENST00000233573.6	chr2	182360097:182360143:182360509:182360664:182363349:182363504,	182360510	182360664	182360586	182360586	Nonsense_Mutation	G	T	p.E488*
ACC	TCGA-OR-A5JA-01	KCNMA1	ENST00000406533.3,ENST00000286628.8,ENST00000457953.1,ENST00000372437.1,ENST00000404771.3	chr10	78729731:78729825:78761164:78761338:78771724:78771801,	78761165	78761338	78761184	78761184	Nonsense_Mutation	G	T	p.C749*
ACC	TCGA-OR-A5JA-01	DHTKD1	ENST00000263035.4	chr10	12143040:12143180:12148244:12148395:12149907:12150014,	12148245	12148395	12148305	12148305	Nonsense_Mutation	G	T	p.E653*
ACC	TCGA-OR-A5JA-01	RSL1D1	ENST00000570767.1,ENST00000542106.1,ENST00000571133.1,ENST00000396503.3,ENST00000355674.5	chr16	11935763:11935857:11940357:11940459:11940551:11940676,	11940358	11940459	11940360	11940360	Nonsense_Mutation	G	T	p.C211*
ACC	TCGA-OR-A5JA-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000521759.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170648761:170648844:170667931:170668146:170669685:170669824,	170667932	170668146	170668124	170668124	Nonsense_Mutation	C	A	p.S872*
ACC	TCGA-OR-A5JA-01	TAF1	ENST00000423759.1,ENST00000276072.3	chrX	70595016:70595136:70596799:70597041:70597452:70597671,	70596800	70597041	70596893	70596893	Nonsense_Mutation	C	A	p.S188*
ACC	TCGA-OR-A5JA-01	TAF1	ENST00000373790.4,ENST00000449580.1	chrX	70595016:70595136:70596862:70597041:70597452:70597671,	70596863	70597041	70596893	70596893	Nonsense_Mutation	C	A	p.S188*
ACC	TCGA-OR-A5JA-01	RGSL1	ENST00000542961.1,ENST00000443996.2,ENST00000367561.5,ENST00000294854.8	chr1	182441530:182441692:182442709:182443677:182457419:182457482,	182442710	182443677	182443145	182443145	Nonsense_Mutation	C	A	p.S300*
ACC	TCGA-OR-A5JA-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087646	109087646	Nonsense_Mutation	G	T	p.E621*
ACC	TCGA-OR-A5JA-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601155	28601155	Nonsense_Mutation	G	A	p.R236*
ACC	TCGA-OR-A5JA-01	SVIL	ENST00000375400.3	chr10	29815889:29815985:29818633:29818773:29819535:29819597,29813400:29813644:29818633:29818773:29819535:29819597,	29818634	29818773	29818653	29818653	Nonsense_Mutation	C	A	p.E743*
ACC	TCGA-OR-A5JA-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918898	76918898	Nonsense_Mutation	C	A	p.E1365*
ACC	TCGA-OR-A5JA-01	CASR	ENST00000490131.1,ENST00000498619.1,ENST00000296154.5	chr3	121973177:121973221:121975927:121976234:121980374:121981259,	121975928	121976234	121976121	121976121	Nonsense_Mutation	G	T	p.E127*
ACC	TCGA-OR-A5JA-01	ASIC1	ENST00000228468.4,ENST00000447966.2	chr12	50453669:50453737:50470995:50471146:50471782:50471910,	50470996	50471146	50471033	50471033	Nonsense_Mutation	C	A	p.S199*
ACC	TCGA-OR-A5JA-01	ACSL3	ENST00000392066.3	chr2	223752547:223752606:223773450:223773868:223781036:223781214,	223773451	223773868	223773830	223773830	Nonsense_Mutation	G	T	p.E114*
ACC	TCGA-OR-A5JA-01	RMDN1	ENST00000519966.1,ENST00000430676.2,ENST00000406452.3	chr8	87500780:87500868:87519223:87519341:87520720:87520848,	87519224	87519341	87519275	87519275	Nonsense_Mutation	C	A	p.E66*
ACC	TCGA-OR-A5JA-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845627	63845627	Nonsense_Mutation	G	T	p.E456*
ACC	TCGA-OR-A5JA-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094923	143094923	Nonsense_Mutation	G	T	p.S318*
ACC	TCGA-OR-A5JB-01	INO80	ENST00000558357.1	chr15	41308285:41308413:41313097:41313323:41319793:41319797,41297790:41297885:41313097:41313323:41319793:41319797,	41313098	41313323	41313297	41313297	Nonsense_Mutation	G	C	p.Y1025*
ACC	TCGA-OR-A5JB-01	GAS8	ENST00000537797.1,ENST00000566266.1	chr16	90097706:90097904:90099125:90099332:90102788:90102994,	90099126	90099332	90099240	90099240	Nonsense_Mutation	G	T	p.E135*
ACC	TCGA-OR-A5JB-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145145583:145147595:145153978:145154159:145155867:145157837,	145153979	145154159	145153988	145153988	Nonsense_Mutation	C	A	p.E1020*
ACC	TCGA-OR-A5JB-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19299226:19299285:19300184:19300329:19305349:19305525,	19300185	19300329	19300261	19300261	Nonsense_Mutation	G	T	p.E179*
ACC	TCGA-OR-A5JB-01	CEP250	ENST00000425934.1,ENST00000342580.4,ENST00000397527.1	chr20	34061825:34061877:34063326:34063471:34064273:34064420,	34063327	34063471	34063418	34063418	Nonsense_Mutation	G	T	p.E555*
ACC	TCGA-OR-A5JB-01	OAS1	ENST00000551241.1,ENST00000445409.2,ENST00000550689.1,ENST00000452357.2,ENST00000202917.5	chr12	113346427:113346629:113348855:113349040:113354313:113354383,	113348856	113349040	113348875	113348875	Nonsense_Mutation	T	G	p.Y163*
ACC	TCGA-OR-A5JB-01	TMPO	ENST00000393053.2	chr12	98938728:98938839:98940136:98940225:98941350:98941479,98931252:98931350:98940136:98940225:98941350:98941479,	98940137	98940225	98940140	98940140	Nonsense_Mutation	G	T	p.G332*
ACC	TCGA-OR-A5JE-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953769	48953769	Nonsense_Mutation	G	T	p.E458*
ACC	TCGA-OR-A5JF-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174814615	174814615	Nonsense_Mutation	C	T	p.Q27*
ACC	TCGA-OR-A5JF-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285234	217285234	Nonsense_Mutation	C	T	p.Q359*
ACC	TCGA-OR-A5JK-01	PGAP1	ENST00000470179.1,ENST00000354764.4,ENST00000423035.1	chr2	197706062:197706096:197707444:197707549:197708611:197708799,	197707445	197707549	197707448	197707448	Nonsense_Mutation	G	C	p.S876*
ACC	TCGA-OR-A5JP-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	21135134:21135260:21250877:21251000:21392398:21392494,	21250878	21251000	21250963	21250963	Nonsense_Mutation	C	A	p.C532*
ACC	TCGA-OR-A5JV-01	ARID4B	ENST00000366603.2,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3	chr1	235359345:235359430:235377083:235377341:235383107:235383283,	235377084	235377341	235377221	235377221	Nonsense_Mutation	G	T	p.C568*
ACC	TCGA-OR-A5JX-01	BTN3A1	ENST00000414912.2	chr6	26406136:26406484:26408054:26408180:26409760:26409961,	26408055	26408180	26408132	26408132	Nonsense_Mutation	A	T	p.R223*
ACC	TCGA-OR-A5JX-01	BTN3A1	ENST00000082468.7,ENST00000425234.2,ENST00000289361.6,ENST00000476549.2	chr6	26406136:26406484:26407898:26408180:26409760:26409961,	26407899	26408180	26408132	26408132	Nonsense_Mutation	A	T	p.R223*
ACC	TCGA-OR-A5JY-01	SH2D4B	ENST00000470604.2	chr10	82369182:82369307:82394040:82394261:82403748:82406314,	82394041	82394261	82394088	82394088	Nonsense_Mutation	G	T	p.E344*
ACC	TCGA-OR-A5K0-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939349	76939349	Nonsense_Mutation	T	A	p.K467*
ACC	TCGA-OR-A5K0-01	NDUFA10	ENST00000307300.4,ENST00000444548.1,ENST00000419408.1,ENST00000404554.1,ENST00000485344.2,ENST00000448880.1,ENST00000476216.1,ENST00000252711.2	chr2	240929492:240929599:240944626:240944712:240946732:240946787,	240944627	240944712	240944641	240944641	Nonsense_Mutation	G	T	p.Y292*
ACC	TCGA-OR-A5K4-01	MDM2	ENST00000258148.7,ENST00000540352.1,ENST00000462284.1,ENST00000258149.5,ENST00000539479.1,ENST00000393415.3,ENST00000471946.1	chr12	69203006:69203072:69210591:69210725:69214104:69214154,69207381:69207408:69210591:69210725:69214104:69214154,	69210592	69210725	69210628	69210628	Nonsense_Mutation	C	T	p.R71*
ACC	TCGA-OR-A5K4-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026605	48026605	Nonsense_Mutation	C	T	p.R495*
ACC	TCGA-OR-A5K4-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026605	48026605	Nonsense_Mutation	C	T	p.R495*
ACC	TCGA-OR-A5K4-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66946406:66946483:66946566:66946794:66947033:66947184,	66946567	66946794	66946627	66946627	Nonsense_Mutation	G	A	p.R408*
ACC	TCGA-OR-A5K4-01	VPS35	ENST00000568784.2,ENST00000562420.1,ENST00000299138.7	chr16	46696154:46696394:46696894:46697074:46702841:46702964,	46696895	46697074	46697064	46697064	Nonsense_Mutation	C	T	p.W553*
ACC	TCGA-OR-A5K5-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998369	144998369	Nonsense_Mutation	T	A	p.K2047*
ACC	TCGA-OR-A5K8-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288624	33288624	Nonsense_Mutation	G	A	p.Q310*
ACC	TCGA-OR-A5K9-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212241940:212242045:212245442:212245555:212251514:212251604,	212245443	212245555	212245552	212245552	Nonsense_Mutation	G	A	p.W344*
ACC	TCGA-OR-A5K9-01	RCAN2	ENST00000306764.7,ENST00000405162.1,ENST00000371374.1,ENST00000330430.6	chr6	46190877:46191038:46214484:46214656:46216459:46216633,	46214485	46214656	46214635	46214635	Nonsense_Mutation	C	A	p.G141*
ACC	TCGA-OR-A5KB-01	NDST4	ENST00000504854.1,ENST00000264363.2	chr4	115769370:115769494:115773880:115773977:115791923:115792106,	115773881	115773977	115773935	115773935	Nonsense_Mutation	C	A	p.E588*
ACC	TCGA-OR-A5KB-01	DOCK5	ENST00000276440.7,ENST00000481100.1	chr8	25042379:25042466:25101189:25101273:25126360:25126401,	25101190	25101273	25101270	25101270	Nonsense_Mutation	G	T	p.E42*
ACC	TCGA-OR-A5KB-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578095	14578095	Nonsense_Mutation	G	T	p.E424*
ACC	TCGA-OR-A5KB-01	SLC22A24	ENST00000417740.1	chr11	62871646:62871770:62886383:62886552:62886652:62886807,	62886384	62886552	62886491	62886491	Nonsense_Mutation	G	T	p.Y241*
ACC	TCGA-OR-A5KB-01	INSC	ENST00000379554.3,ENST00000424273.1,ENST00000525218.1,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15170675:15170776:15197286:15197632:15198656:15198709,	15197287	15197632	15197588	15197588	Nonsense_Mutation	G	T	p.E167*
ACC	TCGA-OR-A5KB-01	PARG	ENST00000402038.3	chr10	51028210:51028339:51040848:51040954:51049995:51050104,	51040849	51040954	51040918	51040918	Nonsense_Mutation	C	A	p.E375*
ACC	TCGA-OR-A5KB-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107459875	107459875	Nonsense_Mutation	C	A	p.E187*
ACC	TCGA-OR-A5KB-01	ACSM2A	ENST00000575558.1,ENST00000417235.2	chr16	20471428:20471613:20476838:20477049:20480833:20480867,20462932:20463003:20476838:20477049:20480833:20480867,	20476839	20477049	20476935	20476935	Nonsense_Mutation	C	T	p.Q92*
ACC	TCGA-OR-A5KB-01	NFIC	ENST00000589123.1,ENST00000590282.1,ENST00000346156.5,ENST00000589537.1,ENST00000586919.1,ENST00000341919.3,ENST00000395111.3,ENST00000443272.2	chr19	3435080:3435205:3449011:3449137:3452479:3452664,	3449012	3449137	3449047	3449047	Nonsense_Mutation	A	T	p.K323*
ACC	TCGA-OR-A5KB-01	CERS3	ENST00000394113.1,ENST00000284382.4,ENST00000538112.2	chr15	100942715:100943070:100996097:100996251:101009582:101009689,	100996098	100996251	100996194	100996194	Nonsense_Mutation	G	T	p.Y301*
ACC	TCGA-OR-A5KB-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32474675:32476670:32477487:32477748:32481843:32481962,	32477488	32477748	32477523	32477523	Nonsense_Mutation	C	T	p.W76*
ACC	TCGA-OR-A5KB-01	PREX2	ENST00000288368.4	chr8	69058443:69058587:69069556:69069671:69103956:69104023,	69069557	69069671	69069640	69069640	Nonsense_Mutation	G	T	p.E1439*
ACC	TCGA-OR-A5KB-01	CDH12	ENST00000504376.2,ENST00000382254.1,ENST00000517378.1	chr5	21842269:21842437:21854779:21854899:21975199:21975494,	21854780	21854899	21854885	21854885	Nonsense_Mutation	G	A	p.Q181*
ACC	TCGA-OR-A5KB-01	PRKACB	ENST00000470673.1,ENST00000432111.1,ENST00000394838.2,ENST00000446538.1,ENST00000370685.3,ENST00000370680.1,ENST00000370689.2,ENST00000450730.1,ENST00000370684.1,ENST00000370688.3,ENST00000413538.1,ENST00000417530.1,ENST00000436133.1,ENST00000370682.3	chr1	84647882:84648011:84649719:84649818:84650782:84650865,	84649720	84649818	84649726	84649726	Nonsense_Mutation	A	T	p.K82*
ACC	TCGA-OR-A5KB-01	PNCK	ENST00000488994.1,ENST00000370142.1,ENST00000466074.1,ENST00000393831.2,ENST00000447676.2,ENST00000370150.1,ENST00000340888.3,ENST00000370145.4	chrX	152936410:152936451:152936532:152936645:152936739:152936815,	152936533	152936645	152936621	152936621	Nonsense_Mutation	G	T	p.Y236*
ACC	TCGA-OR-A5KB-01	VTI1B	ENST00000216456.6,ENST00000554659.1	chr14	68117980:68118198:68120153:68120215:68123132:68123306,	68120154	68120215	68120200	68120200	Nonsense_Mutation	C	A	p.E186*
ACC	TCGA-OR-A5KB-01	ZNF467	ENST00000302017.3	chr7	149461270:149461767:149466178:149466289:149467528:149467645,149463266:149463328:149466178:149466289:149467528:149467645,	149466179	149466289	149466284	149466284	Nonsense_Mutation	C	A	p.E53*
ACC	TCGA-OR-A5KB-01	OLFML2A	ENST00000373580.3	chr9	127539549:127539639:127549253:127549517:127557302:127557410,	127549254	127549517	127549290	127549290	Nonsense_Mutation	G	T	p.E43*
ACC	TCGA-OR-A5KB-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107715	168107715	Nonsense_Mutation	T	G	p.Y3271*
ACC	TCGA-OR-A5KB-01	FAM160A2	ENST00000265978.4,ENST00000524416.1,ENST00000449352.2	chr11	6244309:6244468:6244839:6245478:6245608:6245937,	6244840	6245478	6245247	6245247	Nonsense_Mutation	C	A	p.E124*
ACC	TCGA-OR-A5KB-01	ECHS1	ENST00000368547.3	chr10	135178202:135178229:135179479:135179599:135180392:135180497,	135179480	135179599	135179540	135179540	Nonsense_Mutation	C	A	p.E227*
ACC	TCGA-OR-A5KB-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331586	20331586	Nonsense_Mutation	C	A	p.E286*
ACC	TCGA-OR-A5KB-01	ST6GAL2	ENST00000361803.3	chr2	107418063:107418319:107423101:107423405:107446521:107446535,	107423102	107423405	107423334	107423334	Nonsense_Mutation	C	A	p.E464*
ACC	TCGA-OR-A5KB-01	PLA2G5	ENST00000486277.1,ENST00000375108.3,ENST00000489871.1	chr1	20412575:20412720:20416281:20416388:20417060:20417273,	20416282	20416388	20416346	20416346	Nonsense_Mutation	C	T	p.Q84*
ACC	TCGA-OR-A5KB-01	DENND2A	ENST00000537639.1,ENST00000496613.1,ENST00000275884.6,ENST00000492720.1,ENST00000461883.1	chr7	140268562:140268613:140269444:140269538:140273607:140273805,	140269445	140269538	140269463	140269463	Nonsense_Mutation	C	A	p.E508*
ACC	TCGA-OR-A5KB-01	FAM81B	ENST00000507832.1,ENST00000503361.1,ENST00000283357.5	chr5	94764382:94764436:94772503:94772610:94782265:94782393,	94772504	94772610	94772570	94772570	Nonsense_Mutation	C	T	p.Q285*
ACC	TCGA-OR-A5KB-01	EBF1	ENST00000519739.1,ENST00000313708.6,ENST00000519890.1,ENST00000522192.1,ENST00000518836.1,ENST00000380654.4	chr5	158134986:158135181:158139161:158139341:158139977:158140155,	158139162	158139341	158139314	158139314	Nonsense_Mutation	G	T	p.S466*
ACC	TCGA-OR-A5KO-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574012	7574012	Nonsense_Mutation	C	A	p.E339*
ACC	TCGA-OR-A5KT-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939322	76939322	Nonsense_Mutation	G	A	p.Q476*
ACC	TCGA-OR-A5KV-01	ARHGEF28	ENST00000426542.2,ENST00000287898.5,ENST00000296794.6,ENST00000513042.2,ENST00000296799.4,ENST00000545377.1,ENST00000437974.1	chr5	73163924:73164052:73165893:73166034:73168823:73169071,	73165894	73166034	73165981	73165981	Nonsense_Mutation	C	A	p.S838*
ACC	TCGA-OR-A5KW-01	MEN1	ENST00000377316.2,ENST00000337652.1,ENST00000377326.3,ENST00000377313.1,ENST00000443283.1,ENST00000394374.2,ENST00000377321.1,ENST00000312049.6,ENST00000315422.4,ENST00000394376.1	chr11	64573106:64573242:64573703:64573840:64574482:64574570,	64573704	64573840	64573817	64573817	Nonsense_Mutation	G	C	p.Y317*
ACC	TCGA-OR-A5KY-01	MEN1	ENST00000337652.1,ENST00000377326.3,ENST00000377313.1,ENST00000478548.1,ENST00000443283.1,ENST00000394374.2,ENST00000377321.1,ENST00000312049.6,ENST00000315422.4,ENST00000394376.1	chr11	64571846:64572288:64572505:64572670:64573106:64573242,	64572506	64572670	64572613	64572613	Nonsense_Mutation	G	A	p.R420*
ACC	TCGA-OR-A5KZ-01	IFT140	ENST00000439987.2,ENST00000426508.2	chr16	1639605:1639781:1642176:1642319:1642467:1642589,	1642177	1642319	1642210	1642210	Nonsense_Mutation	C	A	p.E201*
ACC	TCGA-OR-A5L2-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000569991.1,ENST00000394747.1,ENST00000567385.1,ENST00000394748.1	chr16	48258258:48258340:48261716:48261875:48264347:48264484,	48261717	48261875	48261750	48261750	Nonsense_Mutation	G	C	p.S121*
ACC	TCGA-OR-A5L2-01	PTPN6	ENST00000542277.1,ENST00000543115.1,ENST00000536521.1,ENST00000541698.1,ENST00000318974.9,ENST00000538715.1,ENST00000456013.1	chr12	7055872:7055902:7060771:7060894:7061145:7061340,7055872:7055902:7060771:7060894:7061275:7061340,7060537:7060683:7060771:7060894:7061145:7061340,	7060772	7060894	7060782	7060782	Nonsense_Mutation	C	T	p.R7*
ACC	TCGA-OR-A5L2-01	PTPN6	ENST00000538318.1	chr12	7055872:7055902:7060667:7060894:7061145:7061340,	7060668	7060894	7060782	7060782	Nonsense_Mutation	C	T	p.R7*
ACC	TCGA-OR-A5L2-01	TCF7L2	ENST00000369395.1,ENST00000355717.4,ENST00000542695.1,ENST00000369397.4,ENST00000352065.5	chr10	114710965:114711032:114711241:114711366:114724314:114724383,114710965:114711032:114711241:114711366:114799783:114799885,	114711242	114711366	114711350	114711350	Nonsense_Mutation	C	A	p.S122*
ACC	TCGA-OR-A5L3-01	NOMO1	ENST00000287667.7,ENST00000565655.1,ENST00000566823.1	chr16	14982952:14983072:14988854:14988947:14989370:14989551,	14988855	14988947	14988885	14988885	Nonsense_Mutation	G	T	p.G1159*
ACC	TCGA-OR-A5LA-01	UBE3B	ENST00000539599.1,ENST00000434735.2,ENST00000449510.2,ENST00000280774.5,ENST00000342494.3	chr12	109945368:109945540:109947400:109947519:109948148:109948263,	109947401	109947519	109947450	109947450	Nonsense_Mutation	G	T	p.E558*
ACC	TCGA-OR-A5LB-01	CHEK2	ENST00000439200.1,ENST00000382580.2	chr22	29121230:29121355:29130390:29130715:29137756:29137771,29126443:29126536:29130390:29130715:29137756:29137771,	29130391	29130715	29130427	29130427	Nonsense_Mutation	G	A	p.R95*
ACC	TCGA-OR-A5LB-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706547	33706547	Nonsense_Mutation	G	A	p.R142*
ACC	TCGA-OR-A5LB-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176683951:176684152:176686989:176687169:176694562:176694719,	176686990	176687169	176687121	176687121	Nonsense_Mutation	C	T	p.R1700*
ACC	TCGA-OR-A5LJ-01	RNF44	ENST00000504160.1	chr5	175958463:175958631:175959004:175959130:175959366:175959517,	175959005	175959130	175959061	175959061	Nonsense_Mutation	G	A	p.R81*
ACC	TCGA-OR-A5LJ-01	RNF44	ENST00000274811.4	chr5	175958463:175958631:175959004:175959194:175959366:175959517,	175959005	175959194	175959061	175959061	Nonsense_Mutation	G	A	p.R81*
ACC	TCGA-OR-A5LJ-01	RNF44	ENST00000537487.1,ENST00000513029.1	chr5	175958463:175958631:175959004:175959133:175959366:175959517,	175959005	175959133	175959061	175959061	Nonsense_Mutation	G	A	p.R81*
ACC	TCGA-OR-A5LJ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
ACC	TCGA-OR-A5LJ-01	RBM6	ENST00000442092.1,ENST00000539992.1,ENST00000419610.1,ENST00000443081.1,ENST00000422955.1,ENST00000454079.1,ENST00000266022.4,ENST00000441115.1	chr3	50095834:50095995:50097081:50097179:50098388:50098431,	50097082	50097179	50097175	50097175	Nonsense_Mutation	C	T	p.R610*
ACC	TCGA-OR-A5LK-01	ROS1	ENST00000368507.3,ENST00000368508.3	chr6	117609462:117609965:117622136:117622300:117629956:117630091,	117622137	117622300	117622297	117622297	Nonsense_Mutation	C	T	p.W2191*
ACC	TCGA-OR-A5LT-01	MORN5	ENST00000373764.3	chr9	124929046:124929194:124936774:124936906:124962163:124962362,124931939:124932035:124936774:124936906:124962163:124962362,	124936775	124936906	124936830	124936830	Nonsense_Mutation	C	G	p.Y121*
ACC	TCGA-OR-A5LT-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449577	85449577	Nonsense_Mutation	C	T	p.R336*
ACC	TCGA-P6-A5OG-01	EXD2	ENST00000312994.5,ENST00000409242.1	chr14	69670633:69670717:69676140:69676520:69695532:69695789,69658551:69658756:69676140:69676520:69695532:69695789,	69676141	69676520	69676281	69676281	Nonsense_Mutation	C	T	p.R32*
ACC	TCGA-P6-A5OG-01	ARRDC3	ENST00000508948.1,ENST00000265138.3,ENST00000503192.1	chr5	90671343:90671430:90672437:90672585:90674510:90674592,	90672438	90672585	90672527	90672527	Nonsense_Mutation	C	A	p.E141*
ACC	TCGA-P6-A5OG-01	ARHGEF40	ENST00000554514.1,ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000555232.1,ENST00000553709.1	chr14	21550989:21551076:21551993:21552209:21552911:21553082,	21551994	21552209	21552141	21552141	Nonsense_Mutation	C	T	p.Q1241*
ACC	TCGA-P6-A5OG-01	NAALAD2	ENST00000534061.1	chr11	89891312:89891406:89892406:89892505:89896116:89896202,	89892407	89892505	89892474	89892474	Nonsense_Mutation	G	T	p.G320*
ACC	TCGA-P6-A5OG-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790535	133790535	Nonsense_Mutation	G	A	p.Q1029*
ACC	TCGA-PK-A5H9-01	CHRDL2	ENST00000263671.5,ENST00000528789.1,ENST00000376332.3,ENST00000534159.1	chr11	74424430:74424524:74429764:74429877:74441851:74442198,	74429765	74429877	74429769	74429769	Nonsense_Mutation	G	T	p.S64*
ACC	TCGA-PK-A5HB-01	TCERG1	ENST00000549332.1,ENST00000394421.2,ENST00000296702.5	chr5	145826908:145826971:145834618:145834844:145836745:145836898,	145834619	145834844	145834680	145834680	Nonsense_Mutation	C	T	p.R41*
ACC	TCGA-PK-A5HB-01	DEAF1	ENST00000382409.3	chr11	684897:684963:686857:686997:687910:687936,	686858	686997	686974	686974	Nonsense_Mutation	G	A	p.Q230*
ACC	TCGA-PK-A5HB-01	AGK	ENST00000494688.1,ENST00000355413.4,ENST00000535825.1,ENST00000473247.1	chr7	141321531:141321601:141333700:141333780:141336759:141336817,	141333701	141333780	141333740	141333740	Nonsense_Mutation	C	T	p.R210*
ACC	TCGA-PK-A5HB-01	RIMS1	ENST00000521978.1	chr6	72993749:72993821:73000381:73000564:73001636:73001749,	73000382	73000564	73000437	73000437	Nonsense_Mutation	C	T	p.Q1204*
ACC	TCGA-PK-A5HB-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000456676.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37081676:37081785:37083758:37083822:37089009:37089174,	37083759	37083822	37083763	37083763	Nonsense_Mutation	G	T	p.E558*
ACC	TCGA-PK-A5HB-01	EPHB4	ENST00000492878.1,ENST00000487222.1,ENST00000477446.1,ENST00000358173.3,ENST00000360620.3	chr7	100416172:100416266:100417178:100417511:100417762:100417918,	100417179	100417511	100417182	100417182	Nonsense_Mutation	C	A	p.E432*
ACC	TCGA-PK-A5HB-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79581401	79581401	Nonsense_Mutation	C	T	p.W947*
ACC	TCGA-PK-A5HB-01	GSN	ENST00000432226.1,ENST00000341272.2,ENST00000373823.3	chr9	124043788:124043840:124064240:124064445:124065188:124065343,	124064241	124064445	124064309	124064309	Nonsense_Mutation	G	A	p.W20*
CESC	TCGA-C5-A1BE-01	SYNE4	ENST00000340477.5	chr19	36498026:36498170:36499118:36499269:36499455:36499521,36497534:36497573:36499118:36499269:36499455:36499521,	36499119	36499269	36499193	36499193	Nonsense_Mutation	C	A	p.E69*
CESC	TCGA-C5-A1BF-01	HSD17B4	ENST00000513628.1,ENST00000515235.2,ENST00000442060.3,ENST00000510025.1,ENST00000509514.1,ENST00000522415.1,ENST00000256216.6,ENST00000504811.1,ENST00000414835.2,ENST00000515320.1,ENST00000509606.1	chr5	118865595:118865675:118866960:118867099:118872117:118872245,	118866961	118867099	118866973	118866973	Nonsense_Mutation	C	T	p.Q648*
CESC	TCGA-C5-A1BI-01	WDR81	ENST00000419248.1,ENST00000446363.1,ENST00000437219.2,ENST00000309182.5,ENST00000409644.1,ENST00000545662.1	chr17	1638865:1639011:1639332:1639512:1640658:1641448,	1639333	1639512	1639342	1639342	Nonsense_Mutation	C	T	p.R1779*
CESC	TCGA-C5-A1BJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450754	155450754	Nonsense_Mutation	G	C	p.S636*
CESC	TCGA-C5-A1BK-01	TIE1	ENST00000473014.1	chr1	43779448:43779639:43782869:43783743:43784905:43785019,	43782870	43783743	43782898	43782898	Nonsense_Mutation	C	A	p.S813*
CESC	TCGA-C5-A1BK-01	TIE1	ENST00000433781.2,ENST00000372476.3	chr1	43779448:43779639:43782869:43783080:43783234:43783345,	43782870	43783080	43782898	43782898	Nonsense_Mutation	C	A	p.S813*
CESC	TCGA-C5-A1BL-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000483030.1,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115266503:115266623:115267841:115267954:115268831:115268969,	115267842	115267954	115267844	115267844	Nonsense_Mutation	G	C	p.S630*
CESC	TCGA-C5-A1BL-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126736591:126736735:126737136:126737371:126739044:126739187,	126737137	126737371	126737155	126737155	Nonsense_Mutation	G	T	p.E1227*
CESC	TCGA-C5-A1BM-01	ELP5	ENST00000354429.2,ENST00000573513.1,ENST00000574255.1	chr17	7155374:7155401:7155744:7155915:7156088:7156149,	7155745	7155915	7155834	7155834	Nonsense_Mutation	G	T	p.E5*
CESC	TCGA-C5-A1M5-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151960100:151960215:151962122:151962294:151970789:151970952,	151962123	151962294	151962241	151962241	Nonsense_Mutation	G	A	p.Q356*
CESC	TCGA-C5-A1M5-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557806	210557806	Nonsense_Mutation	G	A	p.W304*
CESC	TCGA-C5-A1M5-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557806	210557806	Nonsense_Mutation	G	A	p.W304*
CESC	TCGA-C5-A1M7-01	DHRS12	ENST00000280056.2	chr13	52343291:52343429:52345956:52346047:52348065:52348170,52344919:52345631:52345956:52346047:52348065:52348170,	52345957	52346047	52346018	52346018	Nonsense_Mutation	C	T	p.W166*
CESC	TCGA-C5-A1MH-01	EPHX4	ENST00000370383.4	chr1	92498117:92498147:92508379:92508537:92511088:92511217,	92508380	92508537	92508477	92508477	Nonsense_Mutation	C	T	p.R139*
CESC	TCGA-C5-A1MH-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183866680:183866771:183866854:183866997:183867701:183867758,	183866855	183866997	183866922	183866922	Nonsense_Mutation	G	A	p.R155*
CESC	TCGA-C5-A1MH-01	ADAMTS10	ENST00000597188.1,ENST00000596851.1,ENST00000270328.4	chr19	8660656:8660787:8660956:8661103:8661190:8661296,	8660957	8661103	8660996	8660996	Nonsense_Mutation	C	T	p.W433*
CESC	TCGA-C5-A1MH-01	XPOT	ENST00000332707.5,ENST00000400935.2	chr12	64810477:64810534:64811825:64811895:64812655:64812874,	64811826	64811895	64811848	64811848	Nonsense_Mutation	C	T	p.Q75*
CESC	TCGA-C5-A1MH-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257110	9257110	Nonsense_Mutation	C	G	p.S1259*
CESC	TCGA-C5-A1MH-01	MVB12B	ENST00000545391.1,ENST00000489637.1	chr9	129089140:129089289:129102786:129102909:129143342:129143450,	129102787	129102909	129102821	129102821	Nonsense_Mutation	C	G	p.S39*
CESC	TCGA-C5-A1MK-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645841	215645841	Nonsense_Mutation	G	A	p.Q253*
CESC	TCGA-C5-A1MK-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91190055:91193083:91195816:91196076:91198360:91198940,	91195817	91196076	91195879	91195879	Nonsense_Mutation	G	C	p.S379*
CESC	TCGA-C5-A1MN-01	ESRP2	ENST00000473183.2,ENST00000565858.1	chr16	68266148:68266191:68266273:68266406:68266479:68266590,	68266274	68266406	68266312	68266312	Nonsense_Mutation	G	A	p.Q306*
CESC	TCGA-C5-A1MN-01	KMT2D	ENST00000301067.7	chr12	49437650:49437781:49437982:49438087:49438185:49438305,	49437983	49438087	49438040	49438040	Nonsense_Mutation	T	A	p.K1711*
CESC	TCGA-C5-A1MP-01	SON	ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34915375:34915475:34918518:34918685:34921781:34922406,	34918519	34918685	34918547	34918547	Nonsense_Mutation	G	T	p.E36*
CESC	TCGA-C5-A1MQ-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5617148:5617271:5620204:5620409:5624263:5624718,	5620205	5620409	5620291	5620291	Nonsense_Mutation	G	A	p.R794*
CESC	TCGA-C5-A1MQ-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000528225.1,ENST00000532993.1,ENST00000356641.3	chr11	120312415:120312526:120312812:120312911:120316130:120316173,	120312813	120312911	120312840	120312840	Nonsense_Mutation	A	T	p.K411*
CESC	TCGA-DR-A0ZM-01	SPDYA	ENST00000334056.5,ENST00000379579.4	chr2	29052015:29052185:29063037:29063335:29072715:29073300,	29063038	29063335	29063288	29063288	Nonsense_Mutation	C	G	p.S268*
CESC	TCGA-DR-A0ZM-01	COBLL1	ENST00000342193.4,ENST00000456171.1,ENST00000194871.6,ENST00000375458.2,ENST00000392717.2,ENST00000409184.3,ENST00000493868.1	chr2	165561461:165561615:165578584:165578821:165578934:165579001,	165578585	165578821	165578671	165578671	Nonsense_Mutation	G	A	p.Q304*
CESC	TCGA-DR-A0ZM-01	AK7	ENST00000556643.1	chr14	96858480:96858596:96864411:96864600:96871093:96871202,	96864412	96864600	96864440	96864440	Nonsense_Mutation	C	A	p.S45*
CESC	TCGA-DR-A0ZM-01	TIMELESS	ENST00000553532.1,ENST00000229201.4,ENST00000554616.1	chr12	56814746:56814918:56815134:56815277:56815510:56815593,	56815135	56815277	56815235	56815235	Nonsense_Mutation	G	C	p.S922*
CESC	TCGA-DR-A0ZM-01	SPIDR	ENST00000521214.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48203641:48203726:48308935:48309186:48352884:48352959,48203641:48203726:48308935:48309186:48320422:48320523,48206455:48206619:48308935:48309186:48320422:48320523,	48308936	48309186	48309015	48309015	Nonsense_Mutation	C	G	p.S202*
CESC	TCGA-DR-A0ZM-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151917607:151917820:151919085:151919151:151919657:151919767,	151919086	151919151	151919142	151919142	Nonsense_Mutation	G	C	p.S1148*
CESC	TCGA-DS-A0VM-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151904384:151904513:151917607:151917820:151919085:151919151,	151917608	151917820	151917764	151917764	Nonsense_Mutation	G	A	p.Q1186*
CESC	TCGA-DS-A1OB-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150923541	150923541	Nonsense_Mutation	G	A	p.Q2383*
CESC	TCGA-DS-A1OB-01	ZNF777	ENST00000247930.4	chr7	149128453:149130023:149133665:149133917:149148089:149148203,	149133666	149133917	149133726	149133726	Nonsense_Mutation	C	A	p.E427*
CESC	TCGA-DS-A1OB-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	152012349:152012423:152027685:152027824:152055671:152055760,	152027686	152027824	152027747	152027747	Nonsense_Mutation	G	A	p.R110*
CESC	TCGA-DS-A1OB-01	KMT2C	ENST00000452749.1	chr7	152012349:152012423:152027685:152027827:152055671:152055760,	152027686	152027827	152027747	152027747	Nonsense_Mutation	G	A	p.R110*
CESC	TCGA-DS-A1OB-01	SLC26A6	ENST00000395550.2,ENST00000383733.3,ENST00000482282.1,ENST00000421649.1,ENST00000358747.6,ENST00000420764.2,ENST00000444531.1,ENST00000480524.1,ENST00000431213.1,ENST00000307364.6	chr3	48669195:48669234:48669312:48669477:48669677:48669718,	48669313	48669477	48669431	48669431	Nonsense_Mutation	G	C	p.S190*
CESC	TCGA-DS-A1OB-01	SLC26A6	ENST00000455886.2	chr3	48669081:48669230:48669312:48669525:48670406:48670517,	48669313	48669525	48669431	48669431	Nonsense_Mutation	G	C	p.S190*
CESC	TCGA-DS-A1OB-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165552125	165552125	Nonsense_Mutation	G	A	p.Q593*
CESC	TCGA-DS-A1OB-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165552125	165552125	Nonsense_Mutation	G	A	p.Q593*
CESC	TCGA-DS-A1OB-01	EDEM2	ENST00000374492.3,ENST00000374491.3,ENST00000540582.1	chr20	33719444:33719586:33722540:33722752:33725682:33725802,	33722541	33722752	33722642	33722642	Nonsense_Mutation	C	A	p.E160*
CESC	TCGA-DS-A1OB-01	THOP1	ENST00000585673.1	chr19	2785564:2785676:2790418:2790631:2794761:2794910,	2790419	2790631	2790517	2790517	Nonsense_Mutation	G	T	p.E39*
CESC	TCGA-DS-A1OB-01	POLR2F	ENST00000483713.1,ENST00000488684.1	chr22	38349717:38349814:38352779:38352908:38355352:38355483,	38352780	38352908	38352859	38352859	Nonsense_Mutation	C	T	p.Q34*
CESC	TCGA-DS-A1OC-01	AFF4	ENST00000265343.5	chr5	132220767:132220811:132222001:132222095:132223212:132223284,	132222002	132222095	132222085	132222085	Nonsense_Mutation	C	A	p.E1006*
CESC	TCGA-DS-A1OC-01	ANAPC4	ENST00000510092.1,ENST00000315368.3	chr4	25411319:25411413:25415266:25415364:25415945:25416007,	25415267	25415364	25415344	25415344	Nonsense_Mutation	C	T	p.Q535*
CESC	TCGA-DS-A1OC-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230723526	230723526	Nonsense_Mutation	G	C	p.S288*
CESC	TCGA-DS-A1OC-01	IL12RB1	ENST00000593993.2,ENST00000600835.2	chr19	18177351:18177507:18179198:18179336:18180355:18180523,	18179199	18179336	18179319	18179319	Nonsense_Mutation	G	A	p.R403*
CESC	TCGA-DS-A1OC-01	KLK15	ENST00000416184.1,ENST00000301421.2,ENST00000598239.1	chr19	51330283:51330417:51330917:51331071:51334705:51334748,	51330918	51331071	51331009	51331009	Nonsense_Mutation	G	A	p.Q35*
CESC	TCGA-DS-A1OC-01	KLK15	ENST00000326856.4,ENST00000596931.1,ENST00000602114.1	chr19	51330283:51330417:51330917:51331068:51334705:51334748,	51330918	51331068	51331009	51331009	Nonsense_Mutation	G	A	p.Q35*
CESC	TCGA-DS-A1OC-01	BTAF1	ENST00000265990.6	chr10	93743957:93744161:93748910:93749337:93751875:93752066,	93748911	93749337	93748986	93748986	Nonsense_Mutation	C	T	p.R835*
CESC	TCGA-DS-A1OC-01	HDGF	ENST00000416666.2,ENST00000357325.5,ENST00000465180.1,ENST00000368206.5,ENST00000482651.1,ENST00000368209.5,ENST00000495212.1,ENST00000537739.1	chr1	156713632:156713670:156713954:156714140:156714799:156714938,	156713955	156714140	156714017	156714017	Nonsense_Mutation	C	A	p.E143*
CESC	TCGA-DS-A1OC-01	HSPA9	ENST00000297185.3	chr5	137892140:137892281:137892462:137892555:137893090:137893185,	137892463	137892555	137892546	137892546	Nonsense_Mutation	C	A	p.E580*
CESC	TCGA-DS-A1OD-01	FOXRED2	ENST00000216187.6,ENST00000366463.3,ENST00000397223.4,ENST00000397224.4	chr22	36889679:36889850:36892013:36892255:36894037:36894203,	36892014	36892255	36892230	36892230	Nonsense_Mutation	C	A	p.E470*
CESC	TCGA-FU-A23K-01	IARS2	ENST00000302637.5	chr1	220267454:220267825:220269445:220269568:220273831:220273991,	220269446	220269568	220269459	220269459	Nonsense_Mutation	C	A	p.S22*
CHOL	TCGA-4G-AAZO-01	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28573668	28573668	Nonsense_Mutation	G	A	p.W31*
CHOL	TCGA-W5-AA2O-01	PDCL	ENST00000259467.4	chr9	125585294:125585476:125588894:125589071:125590749:125590910,	125588895	125589071	125588973	125588973	Nonsense_Mutation	G	A	p.R32*
CHOL	TCGA-W5-AA2R-01	DRAM2	ENST00000286692.4,ENST00000539140.1,ENST00000484310.1	chr1	111662498:111662581:111663137:111663315:111668848:111668916,111662498:111662581:111663137:111663315:111667363:111667503,	111663138	111663315	111663216	111663216	Nonsense_Mutation	G	A	p.Q147*
CHOL	TCGA-W5-AA2Z-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232701	132232701	Nonsense_Mutation	C	A	p.E541*
CHOL	TCGA-W5-AA2G-01	GHDC	ENST00000587427.1,ENST00000593209.1,ENST00000414034.3,ENST00000301671.8,ENST00000436923.2	chr17	40343035:40343228:40344258:40344760:40344923:40345045,	40344259	40344760	40344493	40344493	Nonsense_Mutation	C	A	p.E219*
CHOL	TCGA-W5-AA2G-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397042.3	chr20	37186937:37187096:37191174:37191340:37193998:37194121,	37191175	37191340	37191223	37191223	Nonsense_Mutation	G	T	p.E1194*
CHOL	TCGA-W5-AA2G-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462176	16462176	Nonsense_Mutation	T	A	p.K468*
CHOL	TCGA-W5-AA31-01	BAP1	ENST00000460680.1	chr3	52440268:52440392:52440844:52440923:52441189:52441332,	52440845	52440923	52440916	52440916	Nonsense_Mutation	C	T	p.W196*
CHOL	TCGA-W5-AA39-01	STX3	ENST00000535361.1,ENST00000530498.1,ENST00000529177.1,ENST00000337979.4,ENST00000300150.7	chr11	59540689:59540767:59554509:59554609:59556345:59556420,	59554510	59554609	59554567	59554567	Nonsense_Mutation	A	T	p.K58*
CHOL	TCGA-W5-AA39-01	WBP2	ENST00000593002.1	chr17	73845684:73845820:73847648:73847757:73851260:73851403,73845684:73845820:73847648:73847757:73851319:73851387,73845684:73845820:73847648:73847757:73851204:73851285,	73847649	73847757	73847681	73847681	Nonsense_Mutation	T	A	p.K46*
CHOL	TCGA-W5-AA39-01	MARCH6	ENST00000511802.1,ENST00000449913.2,ENST00000510792.1,ENST00000503788.1,ENST00000274140.5	chr5	10402495:10402564:10402644:10402719:10403518:10403653,	10402645	10402719	10402698	10402698	Nonsense_Mutation	G	A	p.W392*
CHOL	TCGA-W5-AA39-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132949	49132949	Nonsense_Mutation	T	A	p.Y690*
CHOL	TCGA-W5-AA39-01	A2M	ENST00000318602.7,ENST00000404455.2	chr12	9264754:9264807:9264972:9265132:9265955:9266135,	9264973	9265132	9264989	9264989	Nonsense_Mutation	G	T	p.Y138*
CHOL	TCGA-W5-AA39-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220580	29220580	Nonsense_Mutation	T	A	p.L1570*
CHOL	TCGA-W5-AA39-01	ATAD2B	ENST00000439915.1	chr2	24111219:24111269:24118688:24118840:24149424:24149935,	24118689	24118840	24118774	24118774	Nonsense_Mutation	G	A	p.Q95*
CHOL	TCGA-3X-AAV9-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14397151:14397263:14398988:14399179:14401071:14401173,	14398989	14399179	14399006	14399006	Nonsense_Mutation	G	T	p.E1481*
CHOL	TCGA-ZH-A8Y2-01	XPNPEP2	ENST00000371106.3	chrX	128880570:128880657:128881582:128881729:128884443:128884545,	128881583	128881729	128881717	128881717	Nonsense_Mutation	G	T	p.E209*
CHOL	TCGA-W5-AA38-01	EIF4ENIF1	ENST00000397525.1,ENST00000397523.1,ENST00000330125.5	chr22	31851837:31851973:31854460:31854636:31858917:31859119,	31854461	31854636	31854517	31854517	Nonsense_Mutation	C	A	p.G303*
CHOL	TCGA-W5-AA38-01	VPS52	ENST00000464425.1	chr6	33236275:33236426:33236790:33236995:33237266:33237334,	33236791	33236995	33236870	33236870	Nonsense_Mutation	G	A	p.R157*
CHOL	TCGA-W5-AA38-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000463486.1,ENST00000478934.1,ENST00000445902.2	chr6	33236275:33236426:33236790:33236966:33237266:33237334,	33236791	33236966	33236870	33236870	Nonsense_Mutation	G	A	p.R157*
CHOL	TCGA-W5-AA2X-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92470476	92470476	Nonsense_Mutation	T	A	p.K1282*
CHOL	TCGA-ZH-A8Y4-01	TRAT1	ENST00000493604.1,ENST00000478830.1	chr3	108541618:108541781:108549516:108549627:108557780:108557814,	108549517	108549627	108549621	108549621	Nonsense_Mutation	C	T	p.R38*
CHOL	TCGA-ZH-A8Y4-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662939	52662939	Nonsense_Mutation	G	A	p.R440*
CHOL	TCGA-ZH-A8Y5-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3661209	3661209	Nonsense_Mutation	G	T	p.C150*
CHOL	TCGA-ZH-A8Y5-01	ART5	ENST00000397067.3	chr11	3660240:3660265:3661075:3661601:3663035:3663094,	3661076	3661601	3661209	3661209	Nonsense_Mutation	G	T	p.C150*
CHOL	TCGA-W5-AA2U-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10197124:10197263:10204997:10205097:10207020:10207148,	10204998	10205097	10205034	10205034	Nonsense_Mutation	G	A	p.W555*
CHOL	TCGA-W5-AA2U-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729730	24729730	Nonsense_Mutation	G	T	p.S228*
CHOL	TCGA-ZH-A8Y1-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678790	52678790	Nonsense_Mutation	T	A	p.K277*
CHOL	TCGA-ZD-A8I3-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000522171.1,ENST00000343161.4,ENST00000447247.1,ENST00000519053.1,ENST00000521860.1,ENST00000523321.1,ENST00000524333.1,ENST00000519457.1	chr8	95839949:95840021:95841202:95841254:95844219:95844229,	95841203	95841254	95841228	95841228	Nonsense_Mutation	G	T	p.E182*
CHOL	TCGA-ZD-A8I3-01	RGS20	ENST00000276500.4	chr8	54791817:54792162:54852135:54852284:54859224:54859308,54792559:54792846:54852135:54852284:54859224:54859308,54793460:54793644:54852135:54852284:54859224:54859308,	54852136	54852284	54852270	54852270	Nonsense_Mutation	T	A	p.C215*
CHOL	TCGA-3X-AAVE-01	PSMA5	ENST00000484563.1	chr1	109957858:109957985:109964481:109964548:109968923:109968973,	109964482	109964548	109964511	109964511	Nonsense_Mutation	G	A	p.Q23*
CHOL	TCGA-ZU-A8S4-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
CHOL	TCGA-ZU-A8S4-01	SAV1	ENST00000324679.4,ENST00000555720.1	chr14	51101931:51102102:51107467:51107611:51111461:51111527,	51107468	51107611	51107521	51107521	Nonsense_Mutation	A	C	p.Y299*
CHOL	TCGA-ZU-A8S4-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41084301:41084390:41088505:41088662:41088819:41089032,	41088506	41088662	41088540	41088540	Nonsense_Mutation	C	T	p.R2366*
CHOL	TCGA-ZU-A8S4-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67700164	67700164	Nonsense_Mutation	C	T	p.Q906*
CHOL	TCGA-W5-AA36-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450665	55450665	Nonsense_Mutation	C	A	p.E508*
CHOL	TCGA-W5-AA2Q-01	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127915867	127915867	Nonsense_Mutation	C	T	p.W242*
CHOL	TCGA-3X-AAVA-01	KREMEN2	ENST00000303746.5,ENST00000319500.6,ENST00000575769.1,ENST00000572045.1	chr16	3016140:3016232:3016325:3016450:3016642:3016796,	3016326	3016450	3016345	3016345	Nonsense_Mutation	C	A	p.C127*
COAD	TCGA-G4-6628-01	AAMP	ENST00000444053.1,ENST00000489767.1,ENST00000248450.4,ENST00000420660.1,ENST00000447885.1	chr2	219130809:219130870:219131165:219131310:219131569:219131709,	219131166	219131310	219131181	219131181	Nonsense_Mutation	G	A	p.R222X
COAD	TCGA-CA-6717-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67178815:67178949:67181617:67181784:67183821:67184020,	67181618	67181784	67181744	67181744	Nonsense_Mutation	C	A	p.E791X
COAD	TCGA-F4-6569-01	ABCA6	ENST00000284425.2,ENST00000446604.2	chr17	67083493:67083614:67084307:67084399:67085605:67085683,	67084308	67084399	67084327	67084327	Nonsense_Mutation	G	A	p.R1227X
COAD	TCGA-AA-3510-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87042932:87043033:87046627:87046831:87047852:87047936,	87046628	87046831	87046648	87046648	Nonsense_Mutation	C	A	p.E888X
COAD	TCGA-AZ-4315-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87080938:87081110:87082259:87082451:87083850:87083908,	87082260	87082451	87082366	87082366	Nonsense_Mutation	G	A	p.R144X
COAD	TCGA-AZ-4315-01	ABHD6	ENST00000295962.4,ENST00000478253.1	chr3	58256658:58256791:58260384:58260542:58270811:58270866,	58260385	58260542	58260429	58260429	Nonsense_Mutation	G	T	p.E190X
COAD	TCGA-CA-6717-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109690819:109690963:109692018:109692139:109693944:109694041,	109692019	109692139	109692076	109692076	Nonsense_Mutation	G	T	p.E2035X
COAD	TCGA-G4-6588-01	ACAT1	ENST00000265838.4,ENST00000532792.1,ENST00000531813.1	chr11	108009694:108009768:108010791:108010942:108012331:108012427,	108010792	108010942	108010834	108010834	Nonsense_Mutation	C	T	p.R208X
COAD	TCGA-AA-3510-01	ACBD4	ENST00000376955.4	chr17	43215294:43215355:43216387:43216527:43220809:43221217,43215289:43215355:43216387:43216527:43219949:43220326,	43216388	43216527	43216450	43216450	Nonsense_Mutation	C	T	p.R238X
COAD	TCGA-CA-6717-01	ACE2	ENST00000252519.3,ENST00000427411.1	chrX	15590323:15590446:15591489:15591588:15593788:15593933,	15591490	15591588	15591491	15591491	Nonsense_Mutation	G	A	p.R514X
COAD	TCGA-AZ-4315-01	ACMSD	ENST00000485893.1,ENST00000356140.5	chr2	135602802:135602847:135616830:135616927:135620964:135621201,135602802:135602847:135616830:135616927:135619538:135619588,	135616831	135616927	135616876	135616876	Nonsense_Mutation	C	T	p.R50X
COAD	TCGA-A6-6141-01	ACSL1	ENST00000281455.2,ENST00000504900.1,ENST00000507295.1	chr4	185709770:185709885:185724473:185724700:185747069:185747188,	185724474	185724700	185724638	185724638	Nonsense_Mutation	G	A	p.R11X
COAD	TCGA-AD-6548-01	ACSM2A	ENST00000575690.1,ENST00000219054.6,ENST00000571894.1,ENST00000576361.1	chr16	20462932:20463003:20471428:20471613:20476838:20476978,20463753:20463788:20471428:20471613:20476838:20476978,	20471429	20471613	20471449	20471449	Nonsense_Mutation	C	T	p.R5X
COAD	TCGA-CA-6717-01	ACSM2A	ENST00000575558.1,ENST00000417235.2	chr16	20471428:20471613:20476838:20477049:20480833:20480867,20462932:20463003:20476838:20477049:20480833:20480867,	20476839	20477049	20477043	20477043	Nonsense_Mutation	C	T	p.R128X
COAD	TCGA-CA-6717-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000574692.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000396104.2	chr16	20482521:20482538:20482857:20483011:20486683:20486763,	20482858	20483011	20482940	20482940	Nonsense_Mutation	G	T	p.E275X
COAD	TCGA-CA-6718-01	ACSS3	ENST00000548058.1	chr12	81470989:81472210:81503338:81503483:81528594:81528742,	81503339	81503483	81503391	81503391	Nonsense_Mutation	G	T	p.E122X
COAD	TCGA-CM-5861-01	ACTR10	ENST00000254286.4,ENST00000545307.2,ENST00000555229.1,ENST00000557711.1,ENST00000553907.1	chr14	58697116:58697198:58698783:58698985:58701087:58701452,	58698784	58698985	58698910	58698910	Nonsense_Mutation	A	-	p.Y332X
COAD	TCGA-G4-6588-01	ACTR1B	ENST00000451664.1,ENST00000289228.5	chr2	98275857:98275940:98277033:98277109:98278344:98278409,	98277034	98277109	98277066	98277066	Nonsense_Mutation	C	A	p.E53X
COAD	TCGA-AA-3510-01	ACTR8	ENST00000335754.3,ENST00000482349.1	chr3	53907058:53907154:53908237:53908391:53909974:53910107,	53908238	53908391	53908261	53908261	Nonsense_Mutation	C	A	p.E348X
COAD	TCGA-CA-6717-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1,ENST00000426655.2	chr12	52378975:52379132:52380601:52380726:52385646:52385776,	52380602	52380726	52380695	52380695	Nonsense_Mutation	T	G	p.Y358X
COAD	TCGA-CA-6717-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R392X
COAD	TCGA-CM-4743-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R392X
COAD	TCGA-F4-6806-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R392X
COAD	TCGA-AZ-6601-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385766	52385766	Nonsense_Mutation	C	T	p.Q409X
COAD	TCGA-G4-6586-01	ACY3	ENST00000255082.3,ENST00000529256.1	chr11	67412515:67412623:67412757:67412851:67413162:67413358,	67412758	67412851	67412828	67412828	Nonsense_Mutation	G	T	p.C152X
COAD	TCGA-DM-A1DA-01	ADAM7	ENST00000520720.1,ENST00000380789.1,ENST00000175238.6	chr8	24357690:24357769:24358302:24358408:24358989:24359089,	24358303	24358408	24358398	24358398	Nonsense_Mutation	C	T	p.Q700X
COAD	TCGA-G4-6588-01	ADAM9	ENST00000487273.2,ENST00000481513.1,ENST00000481873.3,ENST00000379917.3,ENST00000468065.1,ENST00000466936.1	chr8	38865404:38865502:38869176:38869235:38871483:38871562,	38869177	38869235	38869201	38869201	Nonsense_Mutation	G	T	p.G74X
COAD	TCGA-D5-6531-01	ADAMTS16	ENST00000274181.7,ENST00000433402.2	chr5	5235149:5235299:5237081:5237212:5239263:5239300,	5237082	5237212	5237142	5237142	Nonsense_Mutation	C	A	p.S695X
COAD	TCGA-F4-6569-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84506840:84506967:84527517:84527592:84539553:84539711,	84527518	84527592	84527523	84527523	Nonsense_Mutation	G	T	p.E245X
COAD	TCGA-AZ-4315-01	ADAP2	ENST00000584989.1	chr17	29280305:29280368:29281495:29281573:29283258:29283380,29276304:29276388:29281495:29281573:29283258:29283380,	29281496	29281573	29281502	29281502	Nonsense_Mutation	G	T	p.E271X
COAD	TCGA-CM-6676-01	ADD3	ENST00000356080.4,ENST00000277900.8,ENST00000475954.1	chr10	111765561:111765909:111860382:111860606:111872534:111872652,111768009:111768057:111860382:111860606:111872534:111872652,	111860383	111860606	111860547	111860547	Nonsense_Mutation	C	T	p.R46X
COAD	TCGA-AZ-6598-01	AGFG1	ENST00000409315.1,ENST00000409171.1,ENST00000373671.3,ENST00000310078.8	chr2	228337087:228337304:228356262:228356356:228384663:228384779,	228356263	228356356	228356264	228356264	Nonsense_Mutation	C	T	p.R57X
COAD	TCGA-A6-5665-01	AGRN	ENST00000379370.2	chr1	976857:977082:977335:977542:978618:978837,	977336	977542	977503	977503	Nonsense_Mutation	C	T	p.Q449X
COAD	TCGA-F4-6703-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670304	151670304	Nonsense_Mutation	C	T	p.Q260X
COAD	TCGA-AZ-4315-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671726	151671726	Nonsense_Mutation	G	T	p.E734X
COAD	TCGA-CM-5862-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672777	151672777	Nonsense_Mutation	C	A	p.S1084X
COAD	TCGA-D5-6926-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91660825:91660918:91667732:91668086:91669987:91670212,	91667733	91668086	91667980	91667980	Nonsense_Mutation	T	G	p.L1529X
COAD	TCGA-CA-6717-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91731944	91731944	Nonsense_Mutation	C	T	p.R3704X
COAD	TCGA-AM-5821-01	AKR1E2	ENST00000474119.1,ENST00000463345.1	chr10	4884612:4884696:4889339:4889491:4889679:4889937,	4889340	4889491	4889403	4889403	Nonsense_Mutation	C	T	p.R301X
COAD	TCGA-AM-5821-01	AKR1E2	ENST00000298375.7,ENST00000334019.4,ENST00000345253.5	chr10	4884612:4884696:4889339:4889422:4889679:4889937,	4889340	4889422	4889403	4889403	Nonsense_Mutation	C	T	p.R301X
COAD	TCGA-CA-6717-01	ALCAM	ENST00000472644.2,ENST00000470756.1	chr3	105086186:105086325:105238910:105239011:105243132:105243352,	105238911	105239011	105239011	105239011	Nonsense_Mutation	T	G	p.Y58X
COAD	TCGA-CA-6718-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717425	73717425	Nonsense_Mutation	C	A	p.S2779X
COAD	TCGA-CM-6674-01	ALOX12	ENST00000480801.1	chr17	6902033:6902156:6902727:6902785:6903654:6903788,	6902728	6902785	6902759	6902759	Nonsense_Mutation	C	T	p.Q261X
COAD	TCGA-CK-5915-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112066060	112066060	Nonsense_Mutation	G	A	p.R99X
COAD	TCGA-AZ-4615-01	ANAPC7	ENST00000464697.1,ENST00000450008.2	chr12	110832905:110833025:110834070:110834257:110841331:110841469,	110834071	110834257	110834116	110834116	Nonsense_Mutation	T	-	p.V116X
COAD	TCGA-A6-5661-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274616	114274616	Nonsense_Mutation	T	A	p.Y1614X
COAD	TCGA-D5-5537-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278343	114278343	Nonsense_Mutation	G	T	p.E2857X
COAD	TCGA-CA-6717-01	ANK3	ENST00000280772.2,ENST00000503366.1,ENST00000373827.2	chr10	61973169:61973268:61994445:61994544:62021616:62021715,	61994446	61994544	61994475	61994475	Nonsense_Mutation	G	A	p.R290X
COAD	TCGA-D5-6927-01	ANKRA2	ENST00000296785.3	chr5	72850146:72850213:72850685:72850811:72851312:72851410,	72850686	72850811	72850781	72850781	Nonsense_Mutation	G	A	p.R215X
COAD	TCGA-F4-6570-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349019	89349019	Nonsense_Mutation	G	A	p.R1311X
COAD	TCGA-D5-6540-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255369	9255369	Nonsense_Mutation	A	T	p.K702X
COAD	TCGA-AZ-4315-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257187	9257187	Nonsense_Mutation	C	T	p.R1308X
COAD	TCGA-CA-6717-01	ANKRD17	ENST00000558247.1,ENST00000561029.1	chr4	74000833:74000982:74005247:74006000:74007457:74007509,74000833:74000979:74005247:74006000:74007457:74007509,	74005248	74006000	74005854	74005854	Nonsense_Mutation	C	A	p.E827X
COAD	TCGA-CM-4746-01	ANKRD28	ENST00000451422.1	chr3	15793256:15793327:15807740:15807819:15836729:15836813,15778545:15778740:15807740:15807819:15836729:15836813,	15807741	15807819	15807807	15807807	Nonsense_Mutation	G	A	p.R42X
COAD	TCGA-AZ-4315-01	ANKRD44	ENST00000424317.1,ENST00000282272.8,ENST00000448801.1,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197863060:197863143:197863630:197863776:197865142:197865226,	197863631	197863776	197863734	197863734	Nonsense_Mutation	G	T	p.C854X
COAD	TCGA-CA-6717-01	ANO10	ENST00000414522.2,ENST00000350459.4,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43596769:43596961:43602711:43602894:43607144:43607219,	43602712	43602894	43602846	43602846	Nonsense_Mutation	C	A	p.E258X
COAD	TCGA-A6-5665-01	ANO5	ENST00000324559.8	chr11	22232812:22232860:22239791:22239833:22242642:22242756,	22239792	22239833	22239801	22239801	Nonsense_Mutation	C	T	p.R49X
COAD	TCGA-A6-6781-01	ANO9	ENST00000532094.1,ENST00000534161.1,ENST00000528927.1,ENST00000526142.1,ENST00000332826.6	chr11	421140:421198:428087:428199:428357:428394,	428088	428199	428140	428140	Nonsense_Mutation	G	A	p.Q428X
COAD	TCGA-CA-6717-01	AP2B1	ENST00000592191.1,ENST00000262325.7,ENST00000589344.1,ENST00000312678.8,ENST00000537622.2,ENST00000592545.1,ENST00000545922.2,ENST00000538556.1	chr17	33954403:33954524:33954649:33954745:33963359:33963475,	33954650	33954745	33954701	33954701	Nonsense_Mutation	C	T	p.R371X
COAD	TCGA-G4-6628-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202451	115202451	Nonsense_Mutation	G	T	p.G52X
COAD	TCGA-AD-6888-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
COAD	TCGA-CK-4947-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
COAD	TCGA-CK-5914-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
COAD	TCGA-CM-5341-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
COAD	TCGA-CM-6172-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
COAD	TCGA-G4-6315-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
COAD	TCGA-AZ-6601-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128191	112128191	Nonsense_Mutation	C	T	p.R232X
COAD	TCGA-CM-6164-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128191	112128191	Nonsense_Mutation	C	T	p.R232X
COAD	TCGA-D5-6920-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128191	112128191	Nonsense_Mutation	C	T	p.R232X
COAD	TCGA-D5-6926-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128191	112128191	Nonsense_Mutation	C	T	p.R232X
COAD	TCGA-G4-6626-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128191	112128191	Nonsense_Mutation	C	T	p.R232X
COAD	TCGA-CA-6717-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112154771	112154771	Nonsense_Mutation	C	T	p.R330X
COAD	TCGA-A6-2675-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112154942	112154942	Nonsense_Mutation	C	T	p.R387X
COAD	TCGA-AA-3712-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112154958	112154958	Nonsense_Mutation	T	A	p.L392X
COAD	TCGA-CM-4746-01	APP	ENST00000448850.1,ENST00000440126.3,ENST00000357903.3	chr21	27369674:27369731:27372329:27372497:27394155:27394243,27354656:27354790:27372329:27372497:27394155:27394243,	27372330	27372497	27372415	27372415	Nonsense_Mutation	A	T	p.C316X
COAD	TCGA-CA-6717-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000551662.1,ENST00000258530.3	chr12	105591541:105591658:105593150:105593309:105597480:105597563,105591542:105591731:105593150:105593309:105597480:105597563,	105593151	105593309	105593257	105593257	Nonsense_Mutation	C	A	p.E253X
COAD	TCGA-CA-6717-01	APPL2	ENST00000547439.1	chr12	105591542:105591731:105593150:105593302:105597480:105597563,	105593151	105593302	105593257	105593257	Nonsense_Mutation	C	A	p.E253X
COAD	TCGA-CA-6717-01	AQP4	ENST00000383168.4,ENST00000440832.3,ENST00000583022.1,ENST00000581374.1	chr18	24436252:24436453:24440735:24440816:24441094:24441259,	24440736	24440816	24440747	24440747	Nonsense_Mutation	C	A	p.E228X
COAD	TCGA-CM-6678-01	AQP8	ENST00000219660.5,ENST00000566125.1	chr16	25232777:25232904:25235682:25235897:25238388:25238523,	25235683	25235897	25235709	25235709	Nonsense_Mutation	G	A	p.W138X
COAD	TCGA-AZ-4315-01	ARHGAP18	ENST00000368149.2	chr6	129927021:129927104:129929037:129929197:129932677:129932755,	129929038	129929197	129929185	129929185	Nonsense_Mutation	C	A	p.E379X
COAD	TCGA-G4-6588-01	ARHGAP27	ENST00000442348.1,ENST00000532891.2,ENST00000376922.2,ENST00000532038.1,ENST00000531735.1,ENST00000455881.1,ENST00000428638.1,ENST00000528384.1	chr17	43474033:43474156:43474281:43474390:43475314:43475413,	43474282	43474390	43474294	43474294	Nonsense_Mutation	G	A	p.R306X
COAD	TCGA-D5-6532-01	ARHGAP27	ENST00000532891.2,ENST00000376922.2,ENST00000529357.1,ENST00000532038.1,ENST00000528677.1,ENST00000531735.1,ENST00000455881.1,ENST00000428638.1	chr17	43481840:43481894:43481966:43482047:43482289:43482472,	43481967	43482047	43481984	43481984	Nonsense_Mutation	G	A	p.R97X
COAD	TCGA-F4-6570-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560445	32560445	Nonsense_Mutation	A	-	p.S190X
COAD	TCGA-AM-5820-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561316	32561316	Nonsense_Mutation	G	T	p.E481X
COAD	TCGA-CA-6718-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561349	32561349	Nonsense_Mutation	G	T	p.E492X
COAD	TCGA-D5-6928-01	ARHGEF17	ENST00000263674.3	chr11	73073477:73073779:73074250:73074500:73074791:73074878,	73074251	73074500	73074307	73074307	Nonsense_Mutation	G	T	p.E1685X
COAD	TCGA-CA-6717-01	ARHGEF3	ENST00000477440.2	chr3	56916319:56916382:56992850:56992917:57069115:57069204,56916319:56916382:56992850:56992917:57112574:57112843,	56992851	56992917	56992863	56992863	Nonsense_Mutation	C	T	p.W39X
COAD	TCGA-F4-6856-01	ARMC9	ENST00000481520.1,ENST00000349938.4,ENST00000428662.1,ENST00000483477.1	chr2	232141348:232141488:232143094:232143171:232146771:232146846,	232143095	232143171	232143143	232143143	Nonsense_Mutation	C	A	p.S508X
COAD	TCGA-AZ-4315-01	ARPP21	ENST00000187397.4	chr3	35732416:35732497:35748465:35748574:35756930:35756968,35732416:35732497:35748465:35748574:35750460:35750562,	35748466	35748574	35748563	35748563	Nonsense_Mutation	G	T	p.E262X
COAD	TCGA-AD-6964-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3661226	3661226	Nonsense_Mutation	G	A	p.R145X
COAD	TCGA-AD-6964-01	ART5	ENST00000397067.3	chr11	3660240:3660265:3661075:3661601:3663035:3663094,	3661076	3661601	3661226	3661226	Nonsense_Mutation	G	A	p.R145X
COAD	TCGA-AZ-4315-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3661421	3661421	Nonsense_Mutation	G	A	p.R80X
COAD	TCGA-AZ-4315-01	ART5	ENST00000397067.3	chr11	3660240:3660265:3661075:3661601:3663035:3663094,	3661076	3661601	3661421	3661421	Nonsense_Mutation	G	A	p.R80X
COAD	TCGA-AZ-4315-01	ASCC1	ENST00000534259.1,ENST00000317168.6,ENST00000317126.4,ENST00000394919.1,ENST00000545550.1	chr10	73862126:73862170:73887839:73887925:73892814:73892939,73862607:73862725:73887839:73887925:73892814:73892939,73857011:73857208:73887839:73887925:73892814:73892939,	73887840	73887925	73887869	73887869	Nonsense_Mutation	C	A	p.E310X
COAD	TCGA-AA-3510-01	ASPH	ENST00000379454.4,ENST00000445642.3,ENST00000524173.1,ENST00000518068.1,ENST00000522835.1,ENST00000518306.1,ENST00000522919.1,ENST00000356457.5,ENST00000523927.1,ENST00000517847.2,ENST00000541428.1	chr8	62550527:62550562:62550880:62550922:62555446:62555479,	62550881	62550922	62550890	62550890	Nonsense_Mutation	C	A	p.E218X
COAD	TCGA-AA-3510-01	ASPH	ENST00000523897.1,ENST00000519234.1,ENST00000517903.1	chr8	62550527:62550562:62550880:62550919:62555446:62555479,	62550881	62550919	62550890	62550890	Nonsense_Mutation	C	A	p.E218X
COAD	TCGA-A6-6781-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073532	197073532	Nonsense_Mutation	G	A	p.R1617X
COAD	TCGA-AA-3510-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073649	197073649	Nonsense_Mutation	G	A	p.R1578X
COAD	TCGA-D5-6930-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743085	130743085	Nonsense_Mutation	G	A	p.Q356X
COAD	TCGA-CA-6717-01	ATF7IP2	ENST00000535850.1,ENST00000568027.1,ENST00000543967.1,ENST00000356427.2,ENST00000396560.2	chr16	10567779:10567846:10574735:10574821:10575692:10575975,	10574736	10574821	10574766	10574766	Nonsense_Mutation	C	T	p.R505X
COAD	TCGA-CM-5861-01	ATG10	ENST00000458350.3,ENST00000282185.3,ENST00000513634.1	chr5	81460263:81460356:81474308:81474406:81548380:81548478,	81474309	81474406	81474358	81474358	Nonsense_Mutation	C	A	p.C135X
COAD	TCGA-CA-6717-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108114679:108114845:108115514:108115753:108117690:108117854,	108115515	108115753	108115600	108115600	Nonsense_Mutation	C	T	p.R250X
COAD	TCGA-D5-6898-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108128207:108128333:108129712:108129802:108137897:108138069,	108129713	108129802	108129749	108129749	Nonsense_Mutation	C	T	p.R805X
COAD	TCGA-CA-6717-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108164111:108164204:108165653:108165786:108168013:108168109,	108165654	108165786	108165729	108165729	Nonsense_Mutation	C	T	p.R1618X
COAD	TCGA-D5-6928-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000532765.1,ENST00000278616.4,ENST00000533690.1	chr11	108186549:108186638:108186737:108186840:108188099:108188194,	108186738	108186840	108186742	108186742	Nonsense_Mutation	C	T	p.R2034X
COAD	TCGA-CA-6717-01	ATP11C	ENST00000460773.1	chrX	138810944:138811121:138813809:138813914:138820074:138820228,138810944:138811121:138813809:138813914:138814593:138814684,	138813810	138813914	138813845	138813845	Nonsense_Mutation	G	A	p.R1123X
COAD	TCGA-DM-A1HA-01	ATP13A5	ENST00000342358.4	chr3	193051538:193051696:193052717:193052888:193061715:193061844,	193052718	193052888	193052739	193052739	Nonsense_Mutation	G	A	p.R365X
COAD	TCGA-AD-6889-01	ATP2C2	ENST00000416219.2,ENST00000420010.2,ENST00000262429.4,ENST00000565631.1	chr16	84482138:84482295:84485526:84485697:84486743:84486841,	84485527	84485697	84485697	84485697	Nonsense_Mutation	G	T	p.G611X
COAD	TCGA-D5-7000-01	ATP6V0A4	ENST00000353492.4,ENST00000393054.1,ENST00000310018.2	chr7	138400508:138400626:138406641:138406770:138413505:138413607,	138406642	138406770	138406767	138406767	Nonsense_Mutation	G	A	p.Q672X
COAD	TCGA-AZ-6601-01	ATP6V0D1	ENST00000564788.1	chr16	67473176:67473254:67477001:67477081:67487446:67487618,	67477002	67477081	67477005	67477005	Nonsense_Mutation	G	T	p.Y186X
COAD	TCGA-CM-5868-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937849	76937849	Nonsense_Mutation	T	A	p.K967X
COAD	TCGA-CA-6717-01	ATXN2L	ENST00000325215.6,ENST00000564304.1,ENST00000382686.4,ENST00000395547.2,ENST00000336783.4,ENST00000340394.8,ENST00000563314.1,ENST00000570200.1	chr16	28843525:28843720:28843816:28843888:28844137:28844208,	28843817	28843888	28843822	28843822	Nonsense_Mutation	G	T	p.E508X
COAD	TCGA-CA-6718-01	ATXN3	ENST00000556374.1,ENST00000554214.1,ENST00000556958.1,ENST00000553686.1,ENST00000557311.1,ENST00000393287.5,ENST00000556671.1,ENST00000553491.1,ENST00000553570.1,ENST00000555958.1,ENST00000340660.6,ENST00000556315.1,ENST00000553287.1,ENST00000555381.1,ENST00000359366.5,ENST00000545170.1,ENST00000515746.1,ENST00000556288.1,ENST00000553498.1,ENST00000556898.1,ENST00000556220.1,ENST00000554592.1,ENST00000556274.1,ENST00000502250.1,ENST00000553488.1,ENST00000429774.2,ENST00000554672.1,ENST00000532032.1,ENST00000554673.1,ENST00000554491.1,ENST00000506466.1,ENST00000554994.1,ENST00000554350.1,ENST00000503767.1,ENST00000553309.1	chr14	92547366:92547405:92548643:92548810:92549469:92549579,	92548644	92548810	92548704	92548704	Nonsense_Mutation	C	A	p.E60X
COAD	TCGA-G4-6628-01	ATXN7L3	ENST00000586688.1,ENST00000389384.4,ENST00000589607.1,ENST00000587097.1,ENST00000593073.1,ENST00000590537.1,ENST00000454077.2,ENST00000591295.1	chr17	42272018:42272042:42272135:42272207:42272464:42272508,	42272136	42272207	42272170	42272170	Nonsense_Mutation	G	A	p.R242X
COAD	TCGA-A6-6141-01	AXL	ENST00000593513.1,ENST00000359092.3,ENST00000301178.4	chr19	41748787:41748920:41749520:41749612:41754418:41754514,	41749521	41749612	41749522	41749522	Nonsense_Mutation	G	T	p.E483X
COAD	TCGA-AZ-6599-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439898	52439898	Nonsense_Mutation	G	A	p.Q272X
COAD	TCGA-AZ-6601-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72891197:72892899:72903523:72903721:72907129:72907251,	72903524	72903721	72903628	72903628	Nonsense_Mutation	G	A	p.R263X
COAD	TCGA-A6-5667-01	BBS5	ENST00000295240.3,ENST00000554017.1	chr2	170350250:170350346:170354136:170354199:170355995:170356130,	170354137	170354199	170354161	170354161	Nonsense_Mutation	A	T	p.K215X
COAD	TCGA-D5-6928-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107492402	107492402	Nonsense_Mutation	G	T	p.E612X
COAD	TCGA-CK-5913-01	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000538118.1,ENST00000546285.1,ENST00000539282.1	chr12	25031469:25031583:25034234:25034345:25047208:25047370,	25034235	25034345	25034332	25034332	Nonsense_Mutation	A	T	p.L97X
COAD	TCGA-D5-6927-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547687	165547687	Nonsense_Mutation	G	A	p.Q379X
COAD	TCGA-D5-6930-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60687925	60687925	Nonsense_Mutation	C	A	p.G708X
COAD	TCGA-D5-6930-01	BCL11A	ENST00000537768.1	chr2	60679711:60679801:60687816:60688879:60689416:60689559,	60687817	60688879	60687925	60687925	Nonsense_Mutation	C	A	p.G708X
COAD	TCGA-D5-6930-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60687925	60687925	Nonsense_Mutation	C	A	p.G708X
COAD	TCGA-AZ-4315-01	BEND6	ENST00000370746.3,ENST00000370748.3,ENST00000370745.1	chr6	56820169:56820258:56846508:56846728:56857175:56857353,	56846509	56846728	56846723	56846723	Nonsense_Mutation	G	T	p.G39X
COAD	TCGA-CA-6718-01	BHLHE41	ENST00000242728.4	chr12	26276562:26276674:26277004:26277112:26277451:26277515,	26277005	26277112	26277082	26277082	Nonsense_Mutation	C	A	p.E53X
COAD	TCGA-AD-6895-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685446	51685446	Nonsense_Mutation	T	A	p.K482X
COAD	TCGA-A6-5665-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203332241:203332412:203378441:203378552:203379610:203379702,	203378442	203378552	203378487	203378487	Nonsense_Mutation	T	A	p.L155X
COAD	TCGA-G4-6586-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383554	203383554	Nonsense_Mutation	C	T	p.R211X
COAD	TCGA-AD-6895-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383769	203383769	Nonsense_Mutation	T	A	p.Y282X
COAD	TCGA-G4-6588-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203395516:203395677:203397307:203397455:203407033:203407170,	203397308	203397455	203397347	203397347	Nonsense_Mutation	G	T	p.G390X
COAD	TCGA-AD-5900-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203421005	203421005	Nonsense_Mutation	C	T	p.R873X
COAD	TCGA-AA-3663-01	BPNT1	ENST00000414869.2,ENST00000322067.7,ENST00000469520.2,ENST00000544404.1	chr1	220233027:220233133:220236098:220236296:220239414:220239459,220233027:220233133:220236098:220236296:220240643:220240735,	220236099	220236296	220236113	220236113	Nonsense_Mutation	C	A	p.G220X
COAD	TCGA-CA-6717-01	BRCA2	ENST00000544455.1,ENST00000380152.3	chr13	32890558:32890664:32893213:32893462:32899212:32899321,	32893214	32893462	32893435	32893435	Nonsense_Mutation	G	T	p.E97X
COAD	TCGA-AA-3713-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458772	62458772	Nonsense_Mutation	G	A	p.R265X
COAD	TCGA-A6-6653-01	BSN	ENST00000296452.4	chr3	49697918:49699995:49700308:49701099:49701219:49701319,	49700309	49701099	49700419	49700419	Nonsense_Mutation	C	T	p.R3610X
COAD	TCGA-G4-6311-01	BTAF1	ENST00000265990.6	chr10	93743957:93744161:93748910:93749337:93751875:93752066,	93748911	93749337	93749118	93749118	Nonsense_Mutation	A	T	p.K879X
COAD	TCGA-CA-6717-01	BTNL8	ENST00000503543.1	chr5	180338488:180338614:180374624:180374755:180375354:180375375,	180374625	180374755	180374640	180374640	Nonsense_Mutation	G	T	p.E268X
COAD	TCGA-CA-6717-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374640	180374640	Nonsense_Mutation	G	T	p.E268X
COAD	TCGA-CM-5348-01	C11orf49	ENST00000527667.1	chr11	47008758:47008861:47073938:47074069:47159195:47159280,46958330:46958402:47073938:47074069:47159195:47159280,47013093:47013198:47073938:47074069:47159195:47159280,	47073939	47074069	47074048	47074048	Nonsense_Mutation	C	T	p.R87X
COAD	TCGA-AA-3663-01	C17orf58	ENST00000334461.7	chr17	65987245:65988219:65989016:65989351:65989539:65989640,	65989017	65989351	65989055	65989055	Nonsense_Mutation	G	A	p.R70X
COAD	TCGA-AD-6964-01	C1orf100	ENST00000308105.4	chr1	244538673:244538769:244541768:244541941:244552252:244552393,	244541769	244541941	244541908	244541908	Nonsense_Mutation	C	T	p.R98X
COAD	TCGA-AD-6964-01	C1orf100	ENST00000366537.1	chr1	244538673:244538769:244541864:244541941:244552252:244552393,	244541865	244541941	244541908	244541908	Nonsense_Mutation	C	T	p.R98X
COAD	TCGA-DM-A1DA-01	C5	ENST00000223642.1	chr9	123751845:123752058:123753468:123753558:123758517:123758578,	123753469	123753558	123753469	123753469	Nonsense_Mutation	C	A	p.G981X
COAD	TCGA-CM-6674-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42075292	42075292	Nonsense_Mutation	G	A	p.R120X
COAD	TCGA-AA-3510-01	C7	ENST00000313164.9	chr5	40959550:40959722:40962186:40962274:40964842:40964975,	40962187	40962274	40962230	40962230	Nonsense_Mutation	G	T	p.E569X
COAD	TCGA-CA-6718-01	C7orf31	ENST00000443822.1,ENST00000283905.3,ENST00000415598.1,ENST00000409280.1	chr7	25200843:25200879:25207907:25208084:25218793:25218951,	25207908	25208084	25207921	25207921	Nonsense_Mutation	C	A	p.E100X
COAD	TCGA-D5-6532-01	CACNA2D4	ENST00000585732.1	chr12	1969310:1969372:1984416:1984503:1987480:1987555,	1984417	1984503	1984446	1984446	Nonsense_Mutation	C	A	p.E593X
COAD	TCGA-A6-6138-01	CADPS	ENST00000283269.9,ENST00000466621.2,ENST00000383710.4,ENST00000357948.3	chr3	62452013:62452088:62459847:62459995:62463935:62463991,	62459848	62459995	62459927	62459927	Nonsense_Mutation	G	T	p.S1054X
COAD	TCGA-G4-6628-01	CALU	ENST00000493278.1,ENST00000538546.1,ENST00000535623.1,ENST00000249364.4,ENST00000542996.2,ENST00000479257.1,ENST00000449187.2	chr7	128399845:128399906:128407509:128407709:128409116:128409151,	128407510	128407709	128407566	128407566	Nonsense_Mutation	C	T	p.R242X
COAD	TCGA-G4-6302-01	CAMK2D	ENST00000394524.3	chr4	114375260:114375671:114378490:114378719:114381302:114381397,	114378491	114378719	114378618	114378618	Nonsense_Mutation	G	A	p.Q436X
COAD	TCGA-G4-6302-01	CAMK2D	ENST00000296402.5,ENST00000513132.1	chr4	114375260:114375671:114378446:114378719:114381302:114381397,	114378447	114378719	114378618	114378618	Nonsense_Mutation	G	A	p.Q436X
COAD	TCGA-AZ-4315-01	CAMSAP1	ENST00000312405.6	chr9	138741982:138742079:138742167:138742307:138758301:138758382,	138742168	138742307	138742245	138742245	Nonsense_Mutation	C	A	p.E291X
COAD	TCGA-AZ-6601-01	CARD10	ENST00000403299.1,ENST00000251973.5,ENST00000406271.3,ENST00000437756.1	chr22	37891523:37891593:37891766:37892010:37892455:37892567,	37891767	37892010	37891873	37891873	Nonsense_Mutation	G	A	p.R733X
COAD	TCGA-AY-6197-01	CASP4	ENST00000529183.1	chr11	104820387:104820504:104825473:104825728:104839245:104839274,	104825474	104825728	104825625	104825625	Nonsense_Mutation	C	T	p.W37X
COAD	TCGA-AA-3510-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874036	104874036	Nonsense_Mutation	C	A	p.E183X
COAD	TCGA-AM-5820-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Nonsense_Mutation	A	T	p.K124X
COAD	TCGA-AA-3489-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131233	202131233	Nonsense_Mutation	T	A	p.Y8X
COAD	TCGA-AA-3489-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131233	202131233	Nonsense_Mutation	T	A	p.Y8X
COAD	TCGA-A6-5659-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1	chr4	15572020:15572119:15575772:15575949:15581590:15581794,	15575773	15575949	15575830	15575830	Nonsense_Mutation	C	T	p.R1218X
COAD	TCGA-AA-3510-01	CCDC102B	ENST00000360242.5,ENST00000358653.5	chr18	66465316:66465418:66503985:66504606:66505942:66506163,	66503986	66504606	66504397	66504397	Nonsense_Mutation	G	T	p.E133X
COAD	TCGA-CA-6717-01	CCDC171	ENST00000535968.1,ENST00000380701.3,ENST00000297641.3	chr9	15594038:15594170:15623264:15623411:15657124:15657217,	15623265	15623411	15623361	15623361	Nonsense_Mutation	G	T	p.E258X
COAD	TCGA-CM-4743-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93672667:93672955:93676358:93676483:93677657:93677818,	93676359	93676483	93676448	93676448	Nonsense_Mutation	C	A	p.C433X
COAD	TCGA-CA-6717-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93711661:93711761:93712394:93712511:93720027:93720171,	93712395	93712511	93712459	93712459	Nonsense_Mutation	T	G	p.L1049X
COAD	TCGA-AZ-4315-01	CCDC25	ENST00000523841.1,ENST00000517979.1,ENST00000356537.4,ENST00000519509.1,ENST00000524084.1	chr8	27610028:27610104:27614235:27614287:27619935:27619975,	27614236	27614287	27614247	27614247	Nonsense_Mutation	G	A	p.R53X
COAD	TCGA-CA-6718-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372579	180372579	Nonsense_Mutation	C	A	p.E301X
COAD	TCGA-AA-3492-01	CCDC65	ENST00000320516.4,ENST00000266984.5,ENST00000547861.1,ENST00000552188.1,ENST00000552942.1	chr12	49312057:49312255:49312467:49312686:49314712:49314746,	49312468	49312686	49312573	49312573	Nonsense_Mutation	C	T	p.R305X
COAD	TCGA-AA-3510-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636381	32636381	Nonsense_Mutation	C	A	p.E495X
COAD	TCGA-AM-5821-01	CCHCR1	ENST00000507226.1,ENST00000488920.2	chr6	31124629:31124721:31124799:31124932:31125943:31125949,31124629:31124721:31124799:31124932:31125161:31125277,	31124800	31124932	31124849	31124849	Nonsense_Mutation	C	T	p.W78X
COAD	TCGA-AM-5821-01	CCHCR1	ENST00000376266.5,ENST00000475684.2,ENST00000508852.1,ENST00000505392.1	chr6	31124629:31124721:31124799:31124866:31125134:31125277,31124629:31124721:31124799:31124866:31125161:31125277,31124507:31124613:31124799:31124866:31125943:31125949,31124629:31124721:31124799:31124866:31125943:31125949,	31124800	31124866	31124849	31124849	Nonsense_Mutation	C	T	p.W78X
COAD	TCGA-AM-5820-01	CCHCR1	ENST00000507226.1	chr6	31124799:31124866:31125161:31125277:31125943:31125949,31124799:31124932:31125161:31125277:31125943:31125949,	31125162	31125277	31125257	31125257	Nonsense_Mutation	C	A	p.E41X
COAD	TCGA-AM-5820-01	CCHCR1	ENST00000507829.1	chr6	31124799:31124866:31125134:31125277:31125943:31125949,	31125135	31125277	31125257	31125257	Nonsense_Mutation	C	A	p.E41X
COAD	TCGA-CA-6718-01	CCPG1	ENST00000570272.1,ENST00000425574.3,ENST00000310958.6,ENST00000442196.3,ENST00000569205.1,ENST00000564092.1,ENST00000568808.1,ENST00000563171.1	chr15	55670497:55670574:55677797:55677912:55681562:55681631,	55677798	55677912	55677900	55677900	Nonsense_Mutation	C	A	p.E25X
COAD	TCGA-AY-6197-01	CD28	ENST00000324106.8	chr2	204571246:204571340:204591355:204591712:204594370:204594495,204571415:204571471:204591355:204591712:204594370:204594495,	204591356	204591712	204591543	204591543	Nonsense_Mutation	A	-	p.S80X
COAD	TCGA-CA-6718-01	CD300LF	ENST00000301573.9,ENST00000583937.1,ENST00000326165.6,ENST00000464910.1	chr17	72691891:72691998:72692333:72692356:72694507:72694620,	72692334	72692356	72692339	72692339	Nonsense_Mutation	C	A	p.E193X
COAD	TCGA-G4-6628-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078659	117078659	Nonsense_Mutation	G	A	p.Q186X
COAD	TCGA-DM-A1DA-01	CDC26	ENST00000374206.3	chr9	116029287:116029719:116034706:116034828:116035608:116035690,	116034707	116034828	116034721	116034721	Nonsense_Mutation	G	A	p.R23X
COAD	TCGA-CA-6717-01	CDK16	ENST00000517426.1,ENST00000523344.1,ENST00000518022.1,ENST00000357227.4,ENST00000457458.2,ENST00000276052.6	chrX	47085363:47085426:47085677:47085801:47085981:47086102,	47085678	47085801	47085738	47085738	Nonsense_Mutation	C	T	p.R285X
COAD	TCGA-AA-3492-01	CELSR2	ENST00000271332.3	chr1	109812554:109812755:109813047:109813222:109813548:109813661,	109813048	109813222	109813095	109813095	Nonsense_Mutation	C	A	p.C2452X
COAD	TCGA-AA-3510-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814931	214814931	Nonsense_Mutation	G	T	p.E1084X
COAD	TCGA-AZ-4315-01	CENPJ	ENST00000381884.4	chr13	25459743:25459808:25463453:25463538:25466780:25466993,	25463454	25463538	25463526	25463526	Nonsense_Mutation	G	A	p.R1077X
COAD	TCGA-A6-6141-01	CENPJ	ENST00000381884.4,ENST00000545981.1,ENST00000418179.1	chr13	25466780:25467005:25473556:25473722:25478063:25478132,	25473557	25473722	25473685	25473685	Nonsense_Mutation	C	A	p.E955X
COAD	TCGA-AA-3510-01	CEP192	ENST00000506447.1,ENST00000325971.8	chr18	12991375:12991436:12999419:12999587:13001455:13001581,	12999420	12999587	12999436	12999436	Nonsense_Mutation	C	T	p.R5X
COAD	TCGA-G4-6302-01	CEP192	ENST00000511820.2,ENST00000510237.1,ENST00000506447.1,ENST00000430049.2,ENST00000325971.8,ENST00000589596.1	chr18	13056629:13056697:13057583:13057732:13059080:13059212,	13057584	13057732	13057592	13057592	Nonsense_Mutation	C	T	p.R1373X
COAD	TCGA-CA-6717-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88465070:88465226:88465557:88465703:88470998:88471121,	88465558	88465703	88465691	88465691	Nonsense_Mutation	C	A	p.E1908X
COAD	TCGA-G4-6588-01	CEP95	ENST00000553956.2,ENST00000556440.2,ENST00000553412.1	chr17	62530702:62530855:62532719:62532866:62533158:62533230,	62532720	62532866	62532801	62532801	Nonsense_Mutation	C	T	p.R718X
COAD	TCGA-AA-3510-01	CFDP1	ENST00000283882.3	chr16	75327805:75327940:75338921:75339080:75428987:75429034,	75338922	75339080	75338935	75338935	Nonsense_Mutation	G	A	p.R266X
COAD	TCGA-G4-6315-01	CFHR3	ENST00000367425.4	chr1	196748926:196749103:196757345:196757528:196759174:196759357,	196757346	196757528	196757355	196757355	Nonsense_Mutation	C	G	p.S147X
COAD	TCGA-AZ-4315-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117250572:117250723:117251634:117251862:117254666:117254767,	117251635	117251862	117251805	117251805	Nonsense_Mutation	G	T	p.E1104X
COAD	TCGA-F4-6854-01	CHD3	ENST00000439235.1,ENST00000470531.1,ENST00000481999.1,ENST00000358181.4,ENST00000330494.7,ENST00000380358.4	chr17	7812460:7812656:7814164:7814291:7814781:7815068,7813756:7813909:7814164:7814291:7814781:7815068,	7814165	7814291	7814170	7814170	Nonsense_Mutation	C	A	p.Y1886X
COAD	TCGA-A6-6137-01	CHIT1	ENST00000255427.3,ENST00000367229.1,ENST00000535569.1	chr1	203186429:203186500:203186866:203186993:203188343:203188457,203181962:203182173:203186866:203186993:203188343:203188457,203186075:203186261:203186866:203186993:203188343:203188457,	203186867	203186993	203186950	203186950	Nonsense_Mutation	C	T	p.W358X
COAD	TCGA-G4-6626-01	CHIT1	ENST00000255427.3,ENST00000367229.1,ENST00000535569.1	chr1	203186429:203186500:203186866:203186993:203188343:203188457,203181962:203182173:203186866:203186993:203188343:203188457,203186075:203186261:203186866:203186993:203188343:203188457,	203186867	203186993	203186950	203186950	Nonsense_Mutation	C	T	p.W358X
COAD	TCGA-AA-3655-01	CHTOP	ENST00000368690.3,ENST00000403433.1	chr1	153610817:153610924:153614721:153614905:153615702:153615840,153610817:153610924:153614721:153614905:153617539:153617946,	153614722	153614905	153614770	153614770	Nonsense_Mutation	C	T	p.R91X
COAD	TCGA-AD-5900-01	CIZ1	ENST00000357558.5,ENST00000393608.1,ENST00000372938.5,ENST00000415526.1,ENST00000541172.1,ENST00000277465.4,ENST00000372948.3,ENST00000325721.8,ENST00000372954.1,ENST00000476727.2	chr9	130931354:130931480:130931684:130931798:130932298:130932314,	130931685	130931798	130931780	130931780	Nonsense_Mutation	G	A	p.R628X
COAD	TCGA-AD-6889-01	CLASP1	ENST00000263710.4,ENST00000541377.1,ENST00000397587.3,ENST00000455322.2	chr2	122287822:122287901:122363276:122363756:122406947:122407052,	122363277	122363756	122363377	122363377	Nonsense_Mutation	G	T	p.S32X
COAD	TCGA-CM-4752-01	CLCN1	ENST00000343257.2	chr7	143027864:143027990:143028324:143028409:143028643:143028745,	143028325	143028409	143028357	143028357	Nonsense_Mutation	C	T	p.R338X
COAD	TCGA-CM-5864-01	CLEC7A	ENST00000534609.1	chr12	10277895:10278047:10279169:10280444:10282578:10282681,	10279170	10280444	10279261	10279261	Nonsense_Mutation	G	T	p.Y83X
COAD	TCGA-CM-5864-01	CLEC7A	ENST00000529761.1,ENST00000304084.8,ENST00000531192.1,ENST00000533022.1	chr12	10277895:10278047:10279169:10279307:10280345:10280444,	10279170	10279307	10279261	10279261	Nonsense_Mutation	G	T	p.Y83X
COAD	TCGA-CM-5868-01	CLEC7A	ENST00000534609.1	chr12	10277895:10278047:10279169:10280444:10282578:10282681,	10279170	10280444	10279261	10279261	Nonsense_Mutation	G	T	p.Y83X
COAD	TCGA-CM-5868-01	CLEC7A	ENST00000529761.1,ENST00000304084.8,ENST00000531192.1,ENST00000533022.1	chr12	10277895:10278047:10279169:10279307:10280345:10280444,	10279170	10279307	10279261	10279261	Nonsense_Mutation	G	T	p.Y83X
COAD	TCGA-AZ-4315-01	CLIP1	ENST00000537178.1	chr12	122821178:122821295:122825299:122826244:122837272:122837333,	122825300	122826244	122825728	122825728	Nonsense_Mutation	C	A	p.E629X
COAD	TCGA-AZ-4315-01	CLIP1	ENST00000361654.4	chr12	122821178:122821295:122825527:122826244:122837272:122837333,	122825528	122826244	122825728	122825728	Nonsense_Mutation	C	A	p.E629X
COAD	TCGA-AD-6964-01	CLIP4	ENST00000404424.1,ENST00000493551.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29383231:29383333:29386696:29386820:29390341:29390406,	29386697	29386820	29386762	29386762	Nonsense_Mutation	C	T	p.Q534X
COAD	TCGA-AD-5900-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911640	74911640	Nonsense_Mutation	C	T	p.R183X
COAD	TCGA-AZ-4315-01	CLNS1A	ENST00000263309.3	chr11	77333687:77333718:77336007:77336115:77340807:77340944,	77336008	77336115	77336029	77336029	Nonsense_Mutation	C	A	p.E151X
COAD	TCGA-CM-6162-01	CLPX	ENST00000300107.3,ENST00000559152.1	chr15	65444767:65444874:65445884:65445977:65447119:65447419,	65445885	65445977	65445920	65445920	Nonsense_Mutation	G	A	p.R557X
COAD	TCGA-AZ-4315-01	CLTC	ENST00000269122.3,ENST00000393043.1	chr17	57759007:57759200:57759631:57759789:57759989:57760154,	57759632	57759789	57759751	57759751	Nonsense_Mutation	G	T	p.E1188X
COAD	TCGA-CM-6162-01	CLUAP1	ENST00000574369.1,ENST00000341633.5,ENST00000417763.2,ENST00000571025.1	chr16	3551017:3551089:3554719:3554831:3558288:3558464,3551017:3551089:3554719:3554831:3556330:3556415,	3554720	3554831	3554746	3554746	Nonsense_Mutation	G	T	p.G17X
COAD	TCGA-AD-5900-01	CNGB1	ENST00000311183.4	chr16	57988578:57989272:57991244:57991281:57992313:57992389,	57991245	57991281	57991251	57991251	Nonsense_Mutation	G	A	p.Q290X
COAD	TCGA-CA-6717-01	CNTFR	ENST00000351266.4,ENST00000417345.1,ENST00000378980.3	chr9	34557864:34557982:34564596:34564830:34568894:34568979,	34564597	34564830	34564678	34564678	Nonsense_Mutation	C	A	p.E80X
COAD	TCGA-AD-6895-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414122	1414122	Nonsense_Mutation	A	-	p.L544X
COAD	TCGA-G4-6294-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000471618.1,ENST00000478060.1,ENST00000469667.1	chr16	76501248:76501420:76509835:76509942:76513315:76513435,	76509836	76509942	76509872	76509872	Nonsense_Mutation	T	A	p.C491X
COAD	TCGA-AZ-4615-01	CNTROB	ENST00000576723.1,ENST00000565740.1,ENST00000563694.1,ENST00000380262.3	chr17	7846708:7846842:7847440:7847566:7847793:7847956,	7847441	7847566	7847523	7847523	Nonsense_Mutation	C	T	p.R510X
COAD	TCGA-A6-6141-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551579	165551579	Nonsense_Mutation	C	A	p.E813X
COAD	TCGA-A6-6141-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551579	165551579	Nonsense_Mutation	C	A	p.E813X
COAD	TCGA-AD-6889-01	COL11A1	ENST00000353414.4,ENST00000358392.2,ENST00000427239.1,ENST00000370096.3	chr1	103487262:103487325:103488297:103488552:103491076:103491169,	103488298	103488552	103488537	103488537	Nonsense_Mutation	C	A	p.E336X
COAD	TCGA-CA-6717-01	COL11A1	ENST00000358392.2,ENST00000427239.1	chr1	103491076:103491169:103491355:103491508:103496671:103496800,	103491356	103491508	103491411	103491411	Nonsense_Mutation	G	T	p.S293X
COAD	TCGA-CA-6717-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000434620.1	chr8	121240948:121241008:121243705:121243857:121256117:121256247,	121243706	121243857	121243717	121243717	Nonsense_Mutation	G	T	p.G737X
COAD	TCGA-AA-3510-01	COL1A2	ENST00000297268.6	chr7	94056319:94056373:94056499:94056607:94056938:94057197,	94056500	94056607	94056578	94056578	Nonsense_Mutation	C	T	p.R1080X
COAD	TCGA-D5-6931-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000358894.6,ENST00000455906.1,ENST00000415763.1,ENST00000326996.6,ENST00000471582.1,ENST00000422202.1	chr20	61957447:61957501:61958103:61958175:61959303:61959339,	61958104	61958175	61958146	61958146	Nonsense_Mutation	C	T	p.R1167X
COAD	TCGA-G4-6317-01	COL23A1	ENST00000390654.3,ENST00000407622.1	chr5	177683353:177683398:177683866:177683929:177684523:177684568,	177683867	177683929	177683899	177683899	Nonsense_Mutation	C	A	p.E269X
COAD	TCGA-CM-6162-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189860850:189860904:189861123:189861222:189861890:189861943,	189861124	189861222	189861175	189861175	Nonsense_Mutation	C	T	p.R572X
COAD	TCGA-G4-6302-01	COL4A6	ENST00000538570.1,ENST00000545689.1	chrX	107408599:107408716:107412724:107412850:107413838:107413946,	107412725	107412850	107412728	107412728	Nonsense_Mutation	G	A	p.R1230X
COAD	TCGA-CA-6718-01	COPA	ENST00000368069.3,ENST00000541366.1,ENST00000241704.7	chr1	160305031:160305112:160309698:160309772:160309970:160309998,	160309699	160309772	160309764	160309764	Nonsense_Mutation	G	A	p.R55X
COAD	TCGA-CM-4746-01	COQ4	ENST00000300452.3,ENST00000372875.3	chr9	131085294:131085426:131087421:131087518:131088057:131088160,	131087422	131087518	131087517	131087517	Nonsense_Mutation	C	T	p.Q100X
COAD	TCGA-D5-6536-01	CPA1	ENST00000491460.1	chr7	130020334:130020426:130020938:130021020:130021470:130021704,130020707:130020762:130020938:130021020:130021470:130021704,130020334:130020426:130020938:130021020:130021535:130021704,	130020939	130021020	130020943	130020943	Nonsense_Mutation	C	T	p.Q24X
COAD	TCGA-AA-3510-01	CPEB1	ENST00000568128.1	chr15	83240195:83240282:83295943:83296118:83315959:83316254,83240195:83240282:83295943:83296118:83315887:83316110,83240195:83240282:83295943:83296118:83316606:83316728,	83295944	83296118	83296034	83296034	Nonsense_Mutation	G	A	p.R34X
COAD	TCGA-A6-5665-01	CRLF3	ENST00000583527.1	chr17	29100424:29100515:29111324:29111461:29112936:29113011,	29111325	29111461	29111327	29111327	Nonsense_Mutation	G	A	p.R403X
COAD	TCGA-AD-6964-01	CSGALNACT2	ENST00000374464.1	chr10	43633933:43634015:43650344:43651258:43654162:43654379,	43650345	43651258	43651126	43651126	Nonsense_Mutation	C	T	p.R177X
COAD	TCGA-CA-6717-01	CSRP3	ENST00000533783.1	chr11	19209682:19209851:19213883:19214023:19223500:19223589,	19213884	19214023	19213932	19213932	Nonsense_Mutation	C	A	p.E22X
COAD	TCGA-CA-6717-01	CTLA4	ENST00000302823.3	chr2	204735308:204735656:204736100:204736210:204737430:204737498,	204736101	204736210	204736138	204736138	Nonsense_Mutation	G	A	p.W165X
COAD	TCGA-A6-5657-01	CTNNA1	ENST00000522013.1,ENST00000540387.1,ENST00000517533.1,ENST00000518825.1,ENST00000523298.1,ENST00000355078.5,ENST00000521724.1,ENST00000520400.1,ENST00000302763.7,ENST00000523685.1	chr5	138223178:138223331:138240037:138240130:138253430:138253468,	138240038	138240130	138240092	138240092	Nonsense_Mutation	C	T	p.R451X
COAD	TCGA-CA-6717-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266078	41266078	Nonsense_Mutation	G	A	p.W25X
COAD	TCGA-A6-6780-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068234	88068234	Nonsense_Mutation	T	-	p.V64X
COAD	TCGA-G4-6628-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068234	88068234	Nonsense_Mutation	T	-	p.V64X
COAD	TCGA-G4-6320-01	CTU2	ENST00000312060.5,ENST00000378384.3,ENST00000453996.2,ENST00000567949.1,ENST00000566637.1,ENST00000564105.1	chr16	88779029:88779313:88779719:88779855:88780054:88780186,	88779720	88779855	88779745	88779745	Nonsense_Mutation	C	T	p.R255X
COAD	TCGA-AZ-6601-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148456639:148456730:148457424:148457588:148463652:148463815,	148457425	148457588	148457556	148457556	Nonsense_Mutation	C	T	p.Q253X
COAD	TCGA-D5-6928-01	CUL2	ENST00000374742.1,ENST00000374746.1,ENST00000374754.4,ENST00000374748.1,ENST00000374749.3,ENST00000602371.1,ENST00000374751.3,ENST00000537177.1	chr10	35324099:35324224:35327847:35328010:35333493:35333604,	35327848	35328010	35327980	35327980	Nonsense_Mutation	G	A	p.R249X
COAD	TCGA-DM-A28F-01	CUL3	ENST00000454323.1	chr2	225338749:225339093:225342916:225343062:225360548:225360683,	225342917	225343062	225343024	225343024	Nonsense_Mutation	C	A	p.E696X
COAD	TCGA-A6-5665-01	CUTC	ENST00000471520.1	chr10	101510125:101510153:101514285:101514391:101515381:101515465,101507013:101507147:101514285:101514391:101515381:101515465,	101514286	101514391	101514390	101514390	Nonsense_Mutation	C	T	p.R236X
COAD	TCGA-CM-5868-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107263504:107263621:107286934:107287024:107288919:107289010,	107286935	107287024	107287000	107287000	Nonsense_Mutation	G	A	p.Q518X
COAD	TCGA-AZ-4315-01	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204150334:204150455:204154487:204154599:204156984:204157049,	204154488	204154599	204154519	204154519	Nonsense_Mutation	C	T	p.R335X
COAD	TCGA-AA-3510-01	CYP3A43	ENST00000312017.5,ENST00000222382.5,ENST00000434806.1,ENST00000354829.2	chr7	99436742:99436795:99441765:99441865:99445110:99445224,	99441766	99441865	99441779	99441779	Nonsense_Mutation	C	T	p.Q78X
COAD	TCGA-F4-6809-01	CYP4X1	ENST00000538609.1,ENST00000371901.3	chr1	47514236:47514301:47515093:47515176:47515671:47516422,	47515094	47515176	47515118	47515118	Nonsense_Mutation	C	T	p.Q433X
COAD	TCGA-CM-6674-01	CYTIP	ENST00000439355.1	chr2	158291220:158291259:158300358:158300518:158321447:158321539,158291220:158291259:158300358:158300518:158343843:158343946,	158300359	158300518	158300367	158300367	Nonsense_Mutation	G	A	p.R56X
COAD	TCGA-AD-6889-01	DCAF6	ENST00000367843.3,ENST00000312263.6,ENST00000367840.3,ENST00000432587.2,ENST00000489398.1	chr1	168012262:168012378:168013822:168013909:168014137:168014441,	168013823	168013909	168013867	168013867	Nonsense_Mutation	G	T	p.G599X
COAD	TCGA-CA-6718-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121180	95121180	Nonsense_Mutation	C	A	p.E139X
COAD	TCGA-CA-6718-01	DDX27	ENST00000471144.1,ENST00000371764.4,ENST00000484427.1	chr20	47858619:47858743:47859130:47859218:47860165:47860240,	47859131	47859218	47859172	47859172	Nonsense_Mutation	G	T	p.E751X
COAD	TCGA-CM-5864-01	DEAF1	ENST00000382409.3	chr11	684897:684963:686857:686997:687910:687936,	686858	686997	686860	686860	Nonsense_Mutation	G	A	p.Q268X
COAD	TCGA-G4-6588-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380427.1	chr9	19356969:19357152:19357962:19358158:19360241:19360487,	19357963	19358158	19358081	19358081	Nonsense_Mutation	C	T	p.Q1410X
COAD	TCGA-AA-3663-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31605052	31605052	Nonsense_Mutation	A	T	p.L484X
COAD	TCGA-AZ-4315-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1,ENST00000378244.2	chr12	100649826:100650004:100656041:100656187:100660697:100660833,100649826:100650004:100656041:100656187:100657274:100657470,	100656042	100656187	100656045	100656045	Nonsense_Mutation	C	A	p.E233X
COAD	TCGA-CA-6717-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1	chr12	100656041:100656187:100657274:100657671:100660697:100660833,	100657275	100657671	100657285	100657285	Nonsense_Mutation	C	A	p.E182X
COAD	TCGA-A6-5661-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400248.2	chr22	32297727:32297788:32301969:32302052:32302190:32302736,	32301970	32302052	32301983	32301983	Nonsense_Mutation	C	T	p.Q1453X
COAD	TCGA-CA-6717-01	DET1	ENST00000557842.1	chr15	89070829:89071017:89073853:89074704:89074843:89074946,	89073854	89074704	89074630	89074630	Nonsense_Mutation	C	A	p.E103X
COAD	TCGA-CK-5914-01	DHPS	ENST00000210060.7,ENST00000594424.1,ENST00000601639.1	chr19	12786575:12786747:12786830:12786956:12788104:12788210,12786575:12786747:12786830:12786956:12787921:12788025,	12786831	12786956	12786914	12786914	Nonsense_Mutation	C	A	p.E311X
COAD	TCGA-CK-5914-01	DHPS	ENST00000351660.5	chr19	12786575:12786747:12786830:12786919:12788104:12788210,	12786831	12786919	12786914	12786914	Nonsense_Mutation	C	A	p.E311X
COAD	TCGA-AZ-6601-01	DHTKD1	ENST00000448829.1	chr10	12148244:12148395:12149907:12150014:12154898:12155028,12143040:12143180:12149907:12150014:12154898:12155028,	12149908	12150014	12150012	12150012	Nonsense_Mutation	C	T	p.Q718X
COAD	TCGA-CK-5913-01	DHTKD1	ENST00000263035.4	chr10	12159671:12159754:12160747:12160917:12162180:12162266,	12160748	12160917	12160845	12160845	Nonsense_Mutation	C	T	p.R834X
COAD	TCGA-AD-6899-01	DIAPH2	ENST00000373054.4	chrX	95939710:95940189:95993584:95993761:96013152:96013257,	95993585	95993761	95993591	95993591	Nonsense_Mutation	C	T	p.R58X
COAD	TCGA-CA-6718-01	DIS3L	ENST00000530537.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66607373:66607553:66610786:66610956:66612908:66613070,	66610787	66610956	66610924	66610924	Nonsense_Mutation	C	T	p.R378X
COAD	TCGA-AZ-4315-01	DISC1	ENST00000366633.3,ENST00000366632.2,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000422590.2,ENST00000602713.1,ENST00000602822.1,ENST00000366637.3	chr1	231906580:231906816:231930987:231931042:231935853:231935956,	231930988	231931042	231931028	231931028	Nonsense_Mutation	G	T	p.E559X
COAD	TCGA-AZ-4315-01	DKK2	ENST00000513208.1,ENST00000285311.3,ENST00000510463.1	chr4	107845101:107845361:107845701:107845857:107846955:107847106,	107845702	107845857	107845713	107845713	Nonsense_Mutation	G	T	p.S173X
COAD	TCGA-AZ-6599-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13356743	13356743	Nonsense_Mutation	G	A	p.Q280X
COAD	TCGA-AU-6004-01	DLG1	ENST00000450955.1,ENST00000346964.2,ENST00000357674.4	chr3	196803456:196803556:196807921:196807988:196812450:196812529,	196807922	196807988	196807972	196807972	Nonsense_Mutation	G	A	p.R619X
COAD	TCGA-A6-6141-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32328198:32328393:32360216:32360399:32361250:32361403,	32360217	32360399	32360240	32360240	Nonsense_Mutation	G	A	p.R626X
COAD	TCGA-AA-3510-01	DMGDH	ENST00000380311.4,ENST00000255189.3,ENST00000523732.1,ENST00000518477.1	chr5	78329061:78329231:78338105:78338304:78340126:78340375,	78338106	78338304	78338269	78338269	Nonsense_Mutation	G	A	p.R344X
COAD	TCGA-AZ-4315-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225458436:225458568:225459607:225459775:225460656:225460827,	225459608	225459775	225459761	225459761	Nonsense_Mutation	C	T	p.R2603X
COAD	TCGA-CA-6717-01	DNAH2	ENST00000574518.1,ENST00000389173.2,ENST00000572933.1	chr17	7680096:7680207:7680763:7680952:7681394:7681498,	7680764	7680952	7680851	7680851	Nonsense_Mutation	G	T	p.E1716X
COAD	TCGA-A6-6141-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	85011845:85011934:85012733:85012880:85014287:85014426,	85012734	85012880	85012834	85012834	Nonsense_Mutation	G	A	p.W3685X
COAD	TCGA-AA-3713-01	DNALI1	ENST00000541606.1,ENST00000466723.1	chr1	38024927:38025097:38027157:38027336:38027681:38027789,38023203:38023349:38027157:38027336:38027681:38027789,	38027158	38027336	38027214	38027214	Nonsense_Mutation	C	T	p.R174X
COAD	TCGA-CA-6717-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000434676.2,ENST00000358214.5,ENST00000549926.1,ENST00000547312.1,ENST00000548671.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1,ENST00000551476.1	chr12	32854348:32854496:32861086:32861158:32863862:32863937,32860300:32860347:32861086:32861158:32863862:32863937,	32861087	32861158	32861117	32861117	Nonsense_Mutation	G	T	p.E110X
COAD	TCGA-AD-5900-01	DNM2	ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000590806.1,ENST00000585892.1,ENST00000359692.6	chr19	10930655:10930765:10934463:10934575:10935732:10935897,	10934464	10934575	10934546	10934546	Nonsense_Mutation	C	T	p.R622X
COAD	TCGA-G4-6302-01	DNM3	ENST00000355305.5,ENST00000520906.1,ENST00000358155.4,ENST00000367731.1	chr1	172100314:172100428:172222712:172222822:172277867:172277979,	172222713	172222822	172222818	172222818	Nonsense_Mutation	C	T	p.Q589X
COAD	TCGA-AZ-4315-01	DNMT3B	ENST00000348286.2,ENST00000328111.2,ENST00000353855.2,ENST00000201963.3,ENST00000344505.4	chr20	31372563:31372665:31374307:31374433:31375035:31375257,	31374308	31374433	31374311	31374311	Nonsense_Mutation	C	T	p.R104X
COAD	TCGA-A6-5661-01	DOCK11	ENST00000276202.7,ENST00000276204.6	chrX	117752512:117752691:117758501:117758618:117761466:117761542,	117758502	117758618	117758580	117758580	Nonsense_Mutation	C	T	p.R1184X
COAD	TCGA-CM-6674-01	DOCK2	ENST00000256935.8,ENST00000524185.1	chr5	169111199:169111354:169116255:169116337:169122806:169122942,	169116256	169116337	169116272	169116272	Nonsense_Mutation	C	T	p.R260X
COAD	TCGA-F4-6809-01	DOCK2	ENST00000256935.8,ENST00000524185.1	chr5	169111199:169111354:169116255:169116337:169122806:169122942,	169116256	169116337	169116272	169116272	Nonsense_Mutation	C	T	p.R260X
COAD	TCGA-AZ-4315-01	DOCK7	ENST00000251157.5	chr1	62941737:62941827:62943370:62943505:62954604:62954736,	62943371	62943505	62943430	62943430	Nonsense_Mutation	C	A	p.E1828X
COAD	TCGA-AZ-4615-01	DPP8	ENST00000300141.6,ENST00000339244.5,ENST00000341861.5,ENST00000559233.1,ENST00000558559.1	chr15	65744381:65744440:65748562:65748709:65756098:65756183,65746600:65746753:65748562:65748709:65756098:65756183,	65748563	65748709	65748601	65748601	Nonsense_Mutation	G	A	p.R710X
COAD	TCGA-AA-3510-01	DPP8	ENST00000300141.6,ENST00000339244.5,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6	chr15	65780027:65780156:65782526:65782637:65790201:65790370,	65782527	65782637	65782575	65782575	Nonsense_Mutation	C	A	p.E260X
COAD	TCGA-CA-6718-01	DPY19L2	ENST00000324472.4,ENST00000306389.7	chr12	64038182:64038276:64041024:64041145:64055123:64055261,	64041025	64041145	64041055	64041055	Nonsense_Mutation	C	A	p.E227X
COAD	TCGA-AM-5820-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000361203.3,ENST00000446842.2,ENST00000370765.6,ENST00000370788.2,ENST00000421834.2,ENST00000439203.1,ENST00000520645.1,ENST00000518935.1,ENST00000370769.4	chr6	56501354:56501450:56504056:56504161:56504247:56504409,	56504057	56504161	56504059	56504059	Nonsense_Mutation	C	A	p.E451X
COAD	TCGA-CA-6717-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000361203.3,ENST00000446842.2,ENST00000370765.6,ENST00000370788.2,ENST00000421834.2,ENST00000439203.1,ENST00000520645.1,ENST00000518935.1,ENST00000370769.4	chr6	56501354:56501450:56504056:56504161:56504247:56504409,	56504057	56504161	56504149	56504149	Nonsense_Mutation	C	A	p.E421X
COAD	TCGA-A6-5660-01	DUSP13	ENST00000372702.3,ENST00000491677.2	chr10	76863750:76863855:76865418:76865626:76868766:76868891,76863750:76863855:76865418:76865626:76867749:76867967,	76865419	76865626	76865507	76865507	Nonsense_Mutation	G	A	p.R163X
COAD	TCGA-AZ-4315-01	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645263	46645263	Nonsense_Mutation	G	A	p.R533X
COAD	TCGA-CA-6717-01	DYNC2H1	ENST00000334267.7,ENST00000398093.3,ENST00000375735.2	chr11	102984831:102984967:102985905:102986024:102987298:102987443,	102985906	102986024	102986001	102986001	Nonsense_Mutation	G	T	p.E200X
COAD	TCGA-CA-6718-01	DYNC2H1	ENST00000398093.3,ENST00000375735.2	chr11	103027116:103027499:103029405:103029538:103029638:103029756,	103029406	103029538	103029527	103029527	Nonsense_Mutation	G	T	p.E1417X
COAD	TCGA-A6-6141-01	DZIP1	ENST00000347108.3,ENST00000361396.2,ENST00000376829.2,ENST00000361156.3	chr13	96246200:96246340:96251618:96251678:96258256:96258313,	96251619	96251678	96251625	96251625	Nonsense_Mutation	C	A	p.E492X
COAD	TCGA-CA-6717-01	EDC3	ENST00000563009.1,ENST00000315127.4,ENST00000568176.1,ENST00000569561.1,ENST00000426797.3	chr15	74948360:74948409:74963795:74964115:74967301:74967483,	74963796	74964115	74964033	74964033	Nonsense_Mutation	C	A	p.E83X
COAD	TCGA-CM-5348-01	EDNRA	ENST00000339690.5,ENST00000510697.1,ENST00000503721.1,ENST00000506066.1,ENST00000511804.1,ENST00000324300.5,ENST00000358556.4	chr4	148457028:148457181:148460968:148461102:148461528:148461637,	148460969	148461102	148460972	148460972	Nonsense_Mutation	C	T	p.R193X
COAD	TCGA-G4-6302-01	EEF2K	ENST00000263026.5	chr16	22284946:22285071:22291518:22291697:22295207:22297954,	22291519	22291697	22291688	22291688	Nonsense_Mutation	C	T	p.Q687X
COAD	TCGA-AZ-4315-01	EFCAB5	ENST00000378738.3,ENST00000440741.3	chr17	28384693:28384908:28386562:28386719:28400100:28400144,	28386563	28386719	28386704	28386704	Nonsense_Mutation	G	T	p.E908X
COAD	TCGA-CA-6717-01	EFCAB7	ENST00000480886.1,ENST00000371088.4	chr1	63991242:63991430:63997490:63997702:63998340:63998367,	63997491	63997702	63997632	63997632	Nonsense_Mutation	C	A	p.S110X
COAD	TCGA-G4-6323-01	EFCAB7	ENST00000461039.1,ENST00000460678.2,ENST00000371088.4	chr1	64022784:64022918:64027379:64027528:64033980:64034190,	64027380	64027528	64027454	64027454	Nonsense_Mutation	C	T	p.R475X
COAD	TCGA-CK-5916-01	EFEMP1	ENST00000424836.2	chr2	56102080:56102200:56108746:56108869:56144799:56145186,	56108747	56108869	56108765	56108765	Nonsense_Mutation	G	A	p.R208X
COAD	TCGA-CM-5863-01	EFEMP1	ENST00000424836.2	chr2	56102080:56102200:56108746:56108869:56144799:56145186,	56108747	56108869	56108765	56108765	Nonsense_Mutation	G	A	p.R208X
COAD	TCGA-D5-6930-01	EGFLAM	ENST00000322350.5,ENST00000354891.3,ENST00000336740.6	chr5	38412605:38412750:38418167:38418357:38425068:38425194,	38418168	38418357	38418258	38418258	Nonsense_Mutation	C	T	p.R529X
COAD	TCGA-DM-A0XD-01	EIF2AK1	ENST00000474029.1,ENST00000495565.1,ENST00000536084.1,ENST00000199389.6,ENST00000470168.1	chr7	6080783:6080850:6082563:6082624:6084192:6084292,	6082564	6082624	6082571	6082571	Nonsense_Mutation	C	A	p.E261X
COAD	TCGA-D5-6539-01	EIF2AK1	ENST00000495565.1	chr7	6084192:6084292:6085701:6085782:6086622:6086722,6084192:6084292:6085701:6085782:6086407:6086611,	6085702	6085782	6085761	6085761	Nonsense_Mutation	G	A	p.Q191X
COAD	TCGA-AA-3713-01	EIF2B5	ENST00000479833.1,ENST00000273783.3,ENST00000444495.1	chr3	183855953:183856034:183857867:183857945:183858205:183858403,	183857868	183857945	183857922	183857922	Nonsense_Mutation	C	T	p.R274X
COAD	TCGA-AA-3713-01	EIF2B5	ENST00000491144.1	chr3	183855953:183856034:183857867:183858009:183858205:183858403,	183857868	183858009	183857922	183857922	Nonsense_Mutation	C	T	p.R274X
COAD	TCGA-AZ-4315-01	EIF3E	ENST00000521614.1,ENST00000519517.1,ENST00000220849.5,ENST00000519030.1,ENST00000519627.1	chr8	109228704:109228742:109229562:109229689:109240495:109240620,	109229563	109229689	109229610	109229610	Nonsense_Mutation	G	A	p.R268X
COAD	TCGA-G4-6628-01	EIF3E	ENST00000521614.1,ENST00000220849.5,ENST00000522445.1,ENST00000519030.1	chr8	109241298:109241424:109247226:109247331:109248389:109248432,	109247227	109247331	109247235	109247236	Nonsense_Mutation	-	A	p.R155_V156delinsX
COAD	TCGA-F4-6809-01	EIF3M	ENST00000531921.1	chr11	32608591:32608690:32610139:32610278:32611092:32611149,	32610140	32610278	32610209	32610209	Nonsense_Mutation	T	A	p.L82X
COAD	TCGA-AA-3492-01	EIF4E3	ENST00000448225.1,ENST00000425534.3,ENST00000295612.3,ENST00000497838.1,ENST00000469524.1,ENST00000496214.2,ENST00000389826.3,ENST00000421769.2	chr3	71745610:71745671:71748764:71748859:71759562:71759635,	71748765	71748859	71748775	71748775	Nonsense_Mutation	G	A	p.R6X
COAD	TCGA-AZ-4615-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21155639:21155765:21167348:21167521:21175907:21176023,	21167349	21167521	21167468	21167468	Nonsense_Mutation	A	-	p.V1265X
COAD	TCGA-AA-3510-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891479	2891479	Nonsense_Mutation	G	T	p.E452X
COAD	TCGA-AZ-4315-01	EML4	ENST00000409040.1,ENST00000401738.3,ENST00000318522.5	chr2	42472644:42472827:42483640:42483770:42488260:42488434,	42483641	42483770	42483731	42483731	Nonsense_Mutation	C	A	p.S100X
COAD	TCGA-AZ-6598-01	ENOSF1	ENST00000340116.7	chr18	697266:697355:706469:706578:712503:712523,694247:694334:706469:706578:712503:712523,697266:697355:706469:706578:712359:712544,	706470	706578	706529	706529	Nonsense_Mutation	G	A	p.Q2X
COAD	TCGA-AA-3713-01	ENPP3	ENST00000414305.1,ENST00000357639.3,ENST00000358229.5	chr6	132059170:132059303:132061363:132061520:132067925:132068096,	132061364	132061520	132061425	132061425	Nonsense_Mutation	A	-	p.C787X
COAD	TCGA-CA-6718-01	ENSA	ENST00000356527.5,ENST00000369009.3	chr1	150598187:150598284:150599873:150600068:150601889:150601978,	150599874	150600068	150600053	150600053	Nonsense_Mutation	C	A	p.E25X
COAD	TCGA-CA-6718-01	ENSA	ENST00000503345.1	chr1	150598187:150598284:150599787:150600068:150601889:150601978,	150599788	150600068	150600053	150600053	Nonsense_Mutation	C	A	p.E25X
COAD	TCGA-CA-6718-01	ENSA	ENST00000369014.5,ENST00000271690.8	chr1	150598187:150598284:150599942:150600068:150601889:150601978,	150599943	150600068	150600053	150600053	Nonsense_Mutation	C	A	p.E25X
COAD	TCGA-CA-6717-01	ENTHD1	ENST00000325157.6	chr22	40161227:40161614:40216997:40217118:40231844:40231963,	40216998	40217118	40217022	40217022	Nonsense_Mutation	C	A	p.E270X
COAD	TCGA-AU-6004-01	ENTPD5	ENST00000557325.1,ENST00000553284.1,ENST00000334696.6	chr14	74444001:74444077:74449720:74449864:74453516:74453596,	74449721	74449864	74449813	74449813	Nonsense_Mutation	G	A	p.R117X
COAD	TCGA-D5-6930-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000400111.3,ENST00000545076.1,ENST00000427684.2,ENST00000542652.2	chr18	5393178:5393477:5395065:5395146:5395607:5395706,5394681:5394792:5395065:5395146:5395607:5395706,	5395066	5395146	5395107	5395107	Nonsense_Mutation	G	A	p.R1038X
COAD	TCGA-CA-6717-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120830753:120830796:120831675:120831754:120833051:120833096,	120831676	120831754	120831702	120831702	Nonsense_Mutation	C	T	p.R119X
COAD	TCGA-CA-6717-01	EPC1	ENST00000263062.8,ENST00000319778.6,ENST00000375110.2	chr10	32580090:32580250:32581423:32581572:32581915:32582122,	32581424	32581572	32581512	32581512	Nonsense_Mutation	G	A	p.R243X
COAD	TCGA-AA-3713-01	EPHB4	ENST00000477446.1	chr7	100411610:100411643:100414883:100414979:100416141:100416266,	100414884	100414979	100414914	100414914	Nonsense_Mutation	C	-	p.L497X
COAD	TCGA-AA-3713-01	EPHB4	ENST00000487222.1,ENST00000358173.3,ENST00000360620.3	chr7	100411610:100411643:100414813:100414979:100416141:100416266,	100414814	100414979	100414914	100414914	Nonsense_Mutation	C	-	p.L497X
COAD	TCGA-D5-6927-01	EPS8L1	ENST00000540810.1	chr19	55589460:55589496:55591057:55591219:55591496:55591551,55587775:55587829:55591057:55591219:55591496:55591551,	55591058	55591219	55591175	55591175	Nonsense_Mutation	C	T	p.R79X
COAD	TCGA-D5-6928-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623517	623517	Nonsense_Mutation	C	A	p.E279X
COAD	TCGA-AA-3510-01	ERLIN1	ENST00000407654.3,ENST00000421367.2,ENST00000370408.2	chr10	101915901:101915991:101923760:101923852:101927104:101927163,	101923761	101923852	101923794	101923794	Nonsense_Mutation	C	A	p.E208X
COAD	TCGA-A6-6141-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153436	19153436	Nonsense_Mutation	C	A	p.E457X
COAD	TCGA-AA-3510-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153793	19153793	Nonsense_Mutation	C	A	p.E338X
COAD	TCGA-CA-6717-01	ESCO2	ENST00000305188.8,ENST00000397418.2,ENST00000522378.1	chr8	27649479:27649569:27650184:27650328:27657057:27657118,	27650185	27650328	27650200	27650200	Nonsense_Mutation	G	T	p.E457X
COAD	TCGA-CA-6717-01	ESYT2	ENST00000251527.5,ENST00000275418.7	chr7	158536266:158536369:158540884:158540971:158542339:158542414,	158540885	158540971	158540968	158540968	Nonsense_Mutation	G	A	p.R548X
COAD	TCGA-D5-6529-01	ETNK1	ENST00000538218.1	chr12	22778290:22778520:22796696:22796956:22811947:22812088,	22796697	22796956	22796862	22796862	Nonsense_Mutation	C	T	p.Q197X
COAD	TCGA-CA-6717-01	ETNK2	ENST00000367201.3,ENST00000367202.4	chr1	204110442:204110585:204115769:204115892:204118830:204119009,	204115770	204115892	204115879	204115879	Nonsense_Mutation	C	A	p.E178X
COAD	TCGA-A6-5661-01	ETV1	ENST00000405218.2,ENST00000403685.1,ENST00000399357.3,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000343495.5	chr7	13940362:13940464:13946054:13946224:13949256:13949325,	13946055	13946224	13946171	13946171	Nonsense_Mutation	G	A	p.R309X
COAD	TCGA-CK-5916-01	ETV6	ENST00000396373.4	chr12	12006360:12006495:12022357:12022903:12037378:12037521,	12022358	12022903	12022567	12022567	Nonsense_Mutation	C	T	p.Q225X
COAD	TCGA-CK-5913-01	EXOC6	ENST00000443748.2,ENST00000260762.6,ENST00000371552.4,ENST00000371547.4,ENST00000371543.1	chr10	94653105:94653277:94654550:94654598:94654686:94654777,	94654551	94654598	94654572	94654572	Nonsense_Mutation	C	T	p.R94X
COAD	TCGA-CA-6718-01	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000485398.1,ENST00000272427.6	chr2	72727056:72727101:72740260:72740381:72741762:72741809,	72740261	72740381	72740314	72740314	Nonsense_Mutation	C	A	p.E372X
COAD	TCGA-G4-6320-01	EXOG	ENST00000358249.2,ENST00000287675.5,ENST00000453767.1	chr3	38539119:38539269:38542845:38542985:38545105:38545182,	38542846	38542985	38542944	38542944	Nonsense_Mutation	C	T	p.R88X
COAD	TCGA-AD-6964-01	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28575124	28575124	Nonsense_Mutation	G	A	p.W516X
COAD	TCGA-D5-6533-01	EYS	ENST00000503581.1,ENST00000398580.3,ENST00000370616.2,ENST00000370621.3	chr6	64472353:64472526:64487898:64488073:64497997:64498142,	64487899	64488073	64488017	64488017	Nonsense_Mutation	C	A	p.G2594X
COAD	TCGA-AZ-6601-01	F12	ENST00000253496.3	chr5	176832323:176832434:176832735:176832806:176832962:176833062,	176832736	176832806	176832772	176832772	Nonsense_Mutation	G	A	p.R84X
COAD	TCGA-AZ-4315-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511556	169511556	Nonsense_Mutation	C	T	p.W924X
COAD	TCGA-CA-6718-01	FAM135A	ENST00000418814.2,ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000361499.3	chr6	71247993:71248104:71266452:71266566:71269418:71270362,	71266453	71266566	71266530	71266530	Nonsense_Mutation	G	T	p.E1436X
COAD	TCGA-AZ-4315-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067079	62067079	Nonsense_Mutation	G	A	p.R354X
COAD	TCGA-AZ-4315-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067079	62067079	Nonsense_Mutation	G	A	p.R354X
COAD	TCGA-CA-6718-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067079	62067079	Nonsense_Mutation	G	A	p.R354X
COAD	TCGA-CA-6718-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067079	62067079	Nonsense_Mutation	G	A	p.R354X
COAD	TCGA-AZ-4315-01	FAM189A2	ENST00000303068.7,ENST00000257515.8,ENST00000455972.1	chr9	72000735:72000863:72003073:72003366:72006516:72006629,	72003074	72003366	72003280	72003280	Nonsense_Mutation	G	T	p.E355X
COAD	TCGA-AA-3510-01	FAM204A	ENST00000369170.4,ENST00000470476.1,ENST00000369172.4,ENST00000369183.4	chr10	120094625:120094725:120094907:120094938:120095065:120095153,	120094908	120094938	120094918	120094918	Nonsense_Mutation	C	A	p.E115X
COAD	TCGA-D5-6924-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5791157	5791158	Nonsense_Mutation	-	A	p.Y1925_A1926delinsX
COAD	TCGA-A6-6782-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373601	242373601	Nonsense_Mutation	T	A	p.L299X
COAD	TCGA-F4-6459-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223436463:223436741:223464646:223464802:223478529:223478647,	223464647	223464802	223464783	223464783	Nonsense_Mutation	G	C	p.Y494X
COAD	TCGA-AD-6889-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924144	150924144	Nonsense_Mutation	C	A	p.E2182X
COAD	TCGA-AD-6964-01	FBL	ENST00000599159.1,ENST00000221801.3	chr19	40331053:40331155:40331256:40331427:40336930:40336969,	40331257	40331427	40331395	40331395	Nonsense_Mutation	G	A	p.R15X
COAD	TCGA-AD-6964-01	FBL	ENST00000599134.1	chr19	40331053:40331155:40331295:40331427:40336930:40336969,	40331296	40331427	40331395	40331395	Nonsense_Mutation	G	A	p.R15X
COAD	TCGA-AD-6964-01	FBL	ENST00000594309.1	chr19	40331053:40331155:40331259:40331427:40336930:40336969,	40331260	40331427	40331395	40331395	Nonsense_Mutation	G	A	p.R15X
COAD	TCGA-A6-5661-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624319	117624320	Nonsense_Mutation	-	A	p.E145_D146delinsX
COAD	TCGA-CM-6168-01	FBXO22	ENST00000565036.1	chr15	76209570:76209735:76222224:76222390:76225025:76225139,76206450:76206546:76222224:76222390:76225025:76225139,	76222225	76222390	76222308	76222308	Nonsense_Mutation	C	T	p.Q238X
COAD	TCGA-AZ-4315-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147806802	147806802	Nonsense_Mutation	C	T	p.R649X
COAD	TCGA-AZ-4315-01	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147806802	147806802	Nonsense_Mutation	C	T	p.R649X
COAD	TCGA-CK-4948-01	FBXW7	ENST00000603841.1,ENST00000603548.1,ENST00000281708.4	chr4	153268081:153268223:153271193:153271276:153332454:153333024,	153271194	153271276	153271206	153271206	Nonsense_Mutation	G	C	p.S111X
COAD	TCGA-AZ-4315-01	FDXR	ENST00000544854.1,ENST00000455107.2,ENST00000577509.1,ENST00000578473.1,ENST00000420580.2,ENST00000413947.2,ENST00000582944.1,ENST00000293195.5,ENST00000442102.2,ENST00000582710.1,ENST00000579482.1	chr17	72860601:72860686:72860945:72861053:72861840:72861942,	72860946	72861053	72861008	72861008	Nonsense_Mutation	G	A	p.R219X
COAD	TCGA-AZ-4315-01	FDXR	ENST00000581530.1	chr17	72860601:72860686:72860945:72861071:72861840:72861942,	72860946	72861071	72861008	72861008	Nonsense_Mutation	G	A	p.R219X
COAD	TCGA-D5-6930-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Nonsense_Mutation	A	-	p.L474X
COAD	TCGA-D5-6930-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Nonsense_Mutation	A	-	p.L474X
COAD	TCGA-CA-6718-01	FGF7	ENST00000560765.2	chr15	49715456:49715637:49716228:49716780:49775347:49775451,	49716229	49716780	49716708	49716708	Nonsense_Mutation	C	T	p.R72X
COAD	TCGA-CA-6718-01	FGF7	ENST00000560979.1	chr15	49715456:49715637:49716637:49716780:49775347:49775451,	49716638	49716780	49716708	49716708	Nonsense_Mutation	C	T	p.R72X
COAD	TCGA-CA-6717-01	FHOD3	ENST00000587493.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34273171:34273386:34289057:34289354:34297794:34297934,	34289058	34289354	34289210	34289210	Nonsense_Mutation	G	T	p.E622X
COAD	TCGA-CK-5916-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34297998	34297998	Nonsense_Mutation	C	T	p.Q738X
COAD	TCGA-CA-6717-01	FKBP5	ENST00000540787.1,ENST00000539068.1,ENST00000357266.4,ENST00000536438.1	chr6	35547812:35547998:35554810:35554894:35558906:35558997,	35554811	35554894	35554888	35554888	Nonsense_Mutation	C	A	p.E255X
COAD	TCGA-AZ-4315-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216274285:216274462:216274656:216274837:216279559:216279681,	216274657	216274837	216274708	216274708	Nonsense_Mutation	C	A	p.E691X
COAD	TCGA-AZ-4315-01	FNBP1	ENST00000478129.1	chr9	132671168:132671278:132687238:132687436:132689473:132689506,	132687239	132687436	132687264	132687264	Nonsense_Mutation	A	C	p.L321X
COAD	TCGA-AD-6964-01	FNDC3B	ENST00000415807.2,ENST00000416957.1,ENST00000336824.4	chr3	172070592:172070873:172080422:172080635:172096059:172096226,	172080423	172080635	172080484	172080484	Nonsense_Mutation	A	T	p.K953X
COAD	TCGA-AZ-6599-01	FOXH1	ENST00000525197.1	chr8	145700315:145700439:145700539:145700606:145700965:145701206,	145700540	145700606	145700588	145700588	Nonsense_Mutation	C	T	p.W77X
COAD	TCGA-AZ-4616-01	FOXP1	ENST00000493089.1,ENST00000498215.1,ENST00000468577.1,ENST00000475937.1,ENST00000318789.4,ENST00000497355.1,ENST00000484350.1,ENST00000491238.1,ENST00000327590.4	chr3	71037144:71037228:71050122:71050210:71064699:71064804,	71050123	71050210	71050155	71050155	Nonsense_Mutation	G	A	p.Q344X
COAD	TCGA-D5-6928-01	FOXP1	ENST00000493089.1,ENST00000498215.1,ENST00000468577.1,ENST00000475937.1,ENST00000318789.4,ENST00000472382.1,ENST00000485326.2,ENST00000497553.1,ENST00000491238.1,ENST00000327590.4	chr3	71096092:71096246:71101687:71101777:71102786:71102924,	71101688	71101777	71101768	71101768	Nonsense_Mutation	G	A	p.Q144X
COAD	TCGA-AZ-4315-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000507711.1	chr4	48607757:48607850:48608454:48608623:48611003:48611084,	48608455	48608623	48608583	48608583	Nonsense_Mutation	C	A	p.E205X
COAD	TCGA-DM-A1D4-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670150	186670150	Nonsense_Mutation	G	T	p.E5462X
COAD	TCGA-A6-6653-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670981	186670981	Nonsense_Mutation	C	T	p.R5739X
COAD	TCGA-CM-6163-01	FTO	ENST00000471389.1	chr16	53844051:53844129:53859775:53860403:53878066:53878210,	53859776	53860403	53859806	53859806	Nonsense_Mutation	C	T	p.R52X
COAD	TCGA-AA-3663-01	FTO	ENST00000394647.3,ENST00000464071.1,ENST00000471389.1	chr16	53878066:53878210:53907697:53907777:53913755:53913899,	53907698	53907777	53907766	53907766	Nonsense_Mutation	C	T	p.R322X
COAD	TCGA-D5-6931-01	FTSJ1	ENST00000467954.1,ENST00000348411.2,ENST00000396894.4	chrX	48339869:48339916:48340019:48340103:48340796:48340872,48339869:48339916:48340019:48340103:48340790:48340894,	48340020	48340103	48340102	48340102	Nonsense_Mutation	C	A	p.Y218X
COAD	TCGA-AZ-4315-01	FUBP3	ENST00000319725.9	chr9	133489674:133489732:133491741:133491904:133493183:133493282,	133491742	133491904	133491782	133491782	Nonsense_Mutation	C	T	p.R149X
COAD	TCGA-CK-4948-01	FUS	ENST00000380244.3	chr16	31193718:31193743:31193833:31193985:31195178:31195323,31193718:31193743:31193833:31193985:31195181:31195323,	31193834	31193985	31193862	31193862	Nonsense_Mutation	C	T	p.Q23X
COAD	TCGA-CM-6163-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66136132:66136198:66188492:66188739:66190864:66191041,	66188493	66188739	66188638	66188638	Nonsense_Mutation	G	A	p.W327X
COAD	TCGA-AD-5900-01	FXR2	ENST00000250113.7,ENST00000573957.1	chr17	7497996:7498075:7499141:7499312:7504726:7504754,	7499142	7499312	7499267	7499267	Nonsense_Mutation	G	A	p.R236X
COAD	TCGA-CM-6674-01	GABBR1	ENST00000377012.4,ENST00000376977.3,ENST00000355973.3,ENST00000377034.4,ENST00000472823.1,ENST00000477029.1,ENST00000485508.1,ENST00000494877.1,ENST00000377016.4,ENST00000491829.1	chr6	29589880:29589982:29591081:29591252:29591666:29591801,	29591082	29591252	29591192	29591192	Nonsense_Mutation	G	A	p.R223X
COAD	TCGA-AD-6889-01	GABBR2	ENST00000259455.2	chr9	101168362:101168423:101216262:101216499:101235427:101235628,	101216263	101216499	101216493	101216493	Nonsense_Mutation	G	A	p.Q336X
COAD	TCGA-AD-6895-01	GABPA	ENST00000400075.3	chr21	27107699:27107889:27113883:27113986:27117520:27117665,	27113884	27113986	27113931	27113931	Nonsense_Mutation	G	T	p.E8X
COAD	TCGA-AA-3510-01	GALNT11	ENST00000434507.1,ENST00000447796.1,ENST00000430044.2,ENST00000419245.1,ENST00000415421.1,ENST00000320311.2	chr7	151791404:151791607:151797882:151798006:151800196:151800241,	151797883	151798006	151797897	151797897	Nonsense_Mutation	G	T	p.E104X
COAD	TCGA-AZ-6598-01	GBA	ENST00000427500.3	chr1	155208354:155208441:155209676:155209868:155210420:155210508,	155209677	155209868	155209728	155209728	Nonsense_Mutation	G	A	p.R86X
COAD	TCGA-D5-6928-01	GBP4	ENST00000355754.6	chr1	89654264:89654477:89655720:89656001:89656943:89657189,	89655721	89656001	89655891	89655891	Nonsense_Mutation	G	A	p.Q343X
COAD	TCGA-CA-6717-01	GEMIN5	ENST00000285873.7	chr5	154284922:154285036:154287150:154287378:154291286:154291458,	154287151	154287378	154287276	154287276	Nonsense_Mutation	G	T	p.S756X
COAD	TCGA-CA-6717-01	GFM1	ENST00000486715.1,ENST00000478576.1,ENST00000264263.5	chr3	158372335:158372420:158376710:158376848:158378662:158378764,	158376711	158376848	158376717	158376717	Nonsense_Mutation	C	T	p.R364X
COAD	TCGA-AZ-4615-01	GGPS1	ENST00000282841.5	chr1	235491904:235492093:235498556:235498649:235505022:235505093,	235498557	235498649	235498604	235498604	Nonsense_Mutation	C	T	p.Q9X
COAD	TCGA-AZ-6598-01	GIGYF2	ENST00000463554.1,ENST00000440945.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233613696:233613792:233620932:233621044:233625189:233625301,	233620933	233621044	233620984	233620984	Nonsense_Mutation	C	T	p.R107X
COAD	TCGA-AZ-4315-01	GIPC2	ENST00000370759.3	chr1	78585076:78585183:78591564:78591646:78601275:78604133,	78591565	78591646	78591631	78591631	Nonsense_Mutation	C	T	p.R261X
COAD	TCGA-G4-6309-01	GK5	ENST00000492097.1,ENST00000392993.2,ENST00000460544.1,ENST00000480757.1,ENST00000544571.1	chr3	141906545:141906621:141917643:141917775:141923536:141923630,	141917644	141917775	141917727	141917727	Nonsense_Mutation	G	A	p.R154X
COAD	TCGA-A6-6781-01	GLDC	ENST00000321612.6	chr9	6602108:6602205:6604587:6604784:6605130:6605272,	6604588	6604784	6604637	6604637	Nonsense_Mutation	G	A	p.R337X
COAD	TCGA-AY-6196-01	GLI3	ENST00000479210.1,ENST00000395925.3	chr7	42007193:42007521:42011935:42012226:42017156:42017321,	42011936	42012226	42012040	42012040	Nonsense_Mutation	G	A	p.R667X
COAD	TCGA-AD-6889-01	GLI3	ENST00000395925.3,ENST00000448703.1	chr7	42116350:42116456:42187824:42188067:42262728:42262894,	42187825	42188067	42188011	42188011	Nonsense_Mutation	G	A	p.Q61X
COAD	TCGA-CA-6718-01	GLRX3	ENST00000481034.1,ENST00000368644.1	chr10	131934662:131934776:131943474:131943583:131958258:131958333,	131943475	131943583	131943557	131943557	Nonsense_Mutation	G	T	p.E59X
COAD	TCGA-A6-6780-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88813098:88813161:88817447:88817539:88818906:88819030,	88817448	88817539	88817495	88817495	Nonsense_Mutation	C	A	p.G483X
COAD	TCGA-AA-3510-01	GMDS	ENST00000530927.1,ENST00000380815.4,ENST00000531690.1	chr6	1742701:1742820:1930336:1930464:1960100:1960205,	1930337	1930464	1930447	1930447	Nonsense_Mutation	G	A	p.R221X
COAD	TCGA-AA-3510-01	GMPR	ENST00000259727.4	chr6	16254792:16254966:16274645:16274727:16279014:16279121,	16274646	16274727	16274667	16274667	Nonsense_Mutation	G	T	p.E163X
COAD	TCGA-AZ-4315-01	GNL2	ENST00000373062.3	chr1	38058312:38058407:38059362:38059447:38061359:38061522,	38059363	38059447	38059445	38059445	Nonsense_Mutation	G	A	p.R23X
COAD	TCGA-AA-3510-01	GNPTAB	ENST00000299314.7	chr12	102157979:102159082:102159868:102160072:102161814:102161881,	102159869	102160072	102159942	102159942	Nonsense_Mutation	C	T	p.W513X
COAD	TCGA-AZ-4315-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368058	37368058	Nonsense_Mutation	G	T	p.E1583X
COAD	TCGA-AA-3489-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368085	37368085	Nonsense_Mutation	C	T	p.Q1592X
COAD	TCGA-CA-6717-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368196	37368196	Nonsense_Mutation	G	T	p.E1629X
COAD	TCGA-CA-6717-01	GOLGB1	ENST00000494517.1	chr3	121437234:121437348:121441108:121441225:121445759:121445888,	121441109	121441225	121441207	121441207	Nonsense_Mutation	C	A	p.E184X
COAD	TCGA-AA-3510-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155736404	155736404	Nonsense_Mutation	G	A	p.R954X
COAD	TCGA-D5-6540-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120889	46120890	Nonsense_Mutation	-	A	p.N55_N56delinsX
COAD	TCGA-CM-5861-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000557654.1,ENST00000553936.1	chr14	67243181:67243239:67291191:67291284:67309395:67309434,67243181:67243239:67291191:67291284:67346656:67346750,	67291192	67291284	67291192	67291192	Nonsense_Mutation	G	T	p.E68X
COAD	TCGA-AZ-6601-01	GPR155	ENST00000295500.4,ENST00000392552.2,ENST00000392551.2	chr2	175311338:175311475:175318464:175318569:175324605:175324816,	175318465	175318569	175318519	175318519	Nonsense_Mutation	C	A	p.E608X
COAD	TCGA-D5-6929-01	GRASP	ENST00000552049.1	chr12	52404694:52404719:52404822:52404991:52407470:52407564,	52404823	52404991	52404889	52404889	Nonsense_Mutation	G	T	p.E140X
COAD	TCGA-D5-6929-01	GRASP	ENST00000546756.1,ENST00000552963.1,ENST00000293662.4	chr12	52404694:52404719:52404822:52404925:52407470:52407564,	52404823	52404925	52404889	52404889	Nonsense_Mutation	G	T	p.E140X
COAD	TCGA-A6-6141-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11758413:11759045:11761030:11761133:11765279:11765438,	11761031	11761133	11761097	11761097	Nonsense_Mutation	G	T	p.E1371X
COAD	TCGA-CA-6717-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11761030:11761133:11765279:11765438:11767087:11767230,	11765280	11765438	11765288	11765288	Nonsense_Mutation	G	T	p.E1386X
COAD	TCGA-AD-6964-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000578955.1,ENST00000580732.2,ENST00000400483.4	chr18	19057124:19057317:19065580:19065714:19069972:19070192,	19065581	19065714	19065632	19065632	Nonsense_Mutation	A	T	p.K870X
COAD	TCGA-DM-A28G-01	GRID1	ENST00000464741.1,ENST00000327946.7,ENST00000536331.1	chr10	87482759:87482898:87484108:87484433:87487611:87487809,	87484109	87484433	87484181	87484181	Nonsense_Mutation	G	A	p.Q596X
COAD	TCGA-D5-5537-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120769240:120769348:120775998:120776202:120811055:120811169,	120775999	120776202	120776104	120776104	Nonsense_Mutation	C	T	p.R460X
COAD	TCGA-AA-3510-01	GRIP1	ENST00000545666.1,ENST00000540433.1,ENST00000542309.1,ENST00000359742.4,ENST00000538211.1,ENST00000539540.1,ENST00000540854.1,ENST00000536215.1,ENST00000398016.3,ENST00000286445.7	chr12	66911728:66911756:66923610:66923694:66932857:66932888,	66923611	66923694	66923614	66923614	Nonsense_Mutation	G	A	p.R167X
COAD	TCGA-A6-5665-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173729	126173729	Nonsense_Mutation	G	T	p.C569X
COAD	TCGA-CA-6718-01	GSTO2	ENST00000477078.2,ENST00000401888.2	chr10	106037651:106037874:106039127:106039229:106057335:106057442,106037651:106037874:106039127:106039229:106045692:106045748,	106039128	106039229	106039209	106039209	Nonsense_Mutation	G	T	p.E122X
COAD	TCGA-AZ-4315-01	GSTZ1	ENST00000556627.1,ENST00000553838.1,ENST00000349555.3,ENST00000553268.1,ENST00000553431.1,ENST00000554279.1	chr14	77790911:77790965:77791212:77791264:77793180:77793248,77788889:77789075:77791212:77791264:77793180:77793248,77787436:77787526:77791212:77791264:77793180:77793248,	77791213	77791264	77791258	77791258	Nonsense_Mutation	C	T	p.R21X
COAD	TCGA-D5-6540-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27549500:27549677:27556634:27556844:27560990:27561227,	27556635	27556844	27556783	27556783	Nonsense_Mutation	C	A	p.E95X
COAD	TCGA-AD-5900-01	GUF1	ENST00000506793.1,ENST00000281543.5	chr4	44692733:44692877:44693682:44693816:44696428:44696530,	44693683	44693816	44693686	44693686	Nonsense_Mutation	C	T	p.R495X
COAD	TCGA-CK-5916-01	GXYLT2	ENST00000491839.1,ENST00000389617.4	chr3	73004365:73004500:73006379:73006503:73016697:73016870,	73006380	73006503	73006459	73006459	Nonsense_Mutation	G	A	p.W311X
COAD	TCGA-G4-6586-01	H2AFY2	ENST00000373255.4	chr10	71851512:71851710:71853490:71853601:71855409:71855509,	71853491	71853601	71853557	71853557	Nonsense_Mutation	G	T	p.G182X
COAD	TCGA-CM-5348-01	H2AFY	ENST00000504197.1,ENST00000508120.1,ENST00000508785.1,ENST00000507868.1,ENST00000304332.4	chr5	134696208:134696294:134705095:134705293:134705725:134705832,	134705096	134705293	134705152	134705152	Nonsense_Mutation	G	A	p.Q141X
COAD	TCGA-A6-6781-01	HABP4	ENST00000375249.4	chr9	99220660:99220823:99227618:99227780:99227991:99228060,	99227619	99227780	99227746	99227746	Nonsense_Mutation	C	T	p.R214X
COAD	TCGA-G4-6295-01	HABP4	ENST00000375249.4	chr9	99220660:99220823:99227618:99227780:99227991:99228060,	99227619	99227780	99227746	99227746	Nonsense_Mutation	C	T	p.R214X
COAD	TCGA-AY-6197-01	HACL1	ENST00000422591.1	chr3	15628031:15628109:15631046:15631119:15633106:15633187,15624384:15624496:15631046:15631119:15633106:15633187,	15631047	15631119	15631061	15631061	Nonsense_Mutation	G	A	p.Q123X
COAD	TCGA-CM-5341-01	HADHB	ENST00000494615.1,ENST00000537713.1,ENST00000317799.5,ENST00000545822.1	chr2	26499940:26500028:26501481:26501669:26502002:26502183,	26501482	26501669	26501646	26501646	Nonsense_Mutation	C	T	p.R203X
COAD	TCGA-AU-6004-01	HAL	ENST00000261208.3,ENST00000538703.1,ENST00000546999.1,ENST00000541929.1,ENST00000544080.2	chr12	96379842:96379938:96380844:96380992:96381970:96382018,	96380845	96380992	96380932	96380932	Nonsense_Mutation	G	A	p.R114X
COAD	TCGA-A6-5665-01	HBS1L	ENST00000367837.5,ENST00000367824.4,ENST00000526100.1,ENST00000527005.1,ENST00000445176.2,ENST00000367826.2,ENST00000533274.1,ENST00000415177.2,ENST00000527578.1	chr6	135287466:135287611:135290375:135290476:135299816:135299925,	135290376	135290476	135290431	135290431	Nonsense_Mutation	G	A	p.R573X
COAD	TCGA-AZ-6607-01	HBS1L	ENST00000367837.5,ENST00000367824.4,ENST00000526100.1,ENST00000527005.1,ENST00000445176.2,ENST00000367826.2,ENST00000533274.1,ENST00000415177.2,ENST00000527578.1	chr6	135287466:135287611:135290375:135290476:135299816:135299925,	135290376	135290476	135290431	135290431	Nonsense_Mutation	G	A	p.R573X
COAD	TCGA-A6-6781-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Nonsense_Mutation	G	-	p.M65X
COAD	TCGA-A6-6781-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Nonsense_Mutation	G	-	p.M65X
COAD	TCGA-A6-6781-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Nonsense_Mutation	G	-	p.M65X
COAD	TCGA-A6-6781-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Nonsense_Mutation	G	-	p.M65X
COAD	TCGA-G4-6586-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Nonsense_Mutation	G	-	p.M65X
COAD	TCGA-G4-6586-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Nonsense_Mutation	G	-	p.M65X
COAD	TCGA-G4-6586-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Nonsense_Mutation	G	-	p.M65X
COAD	TCGA-G4-6586-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Nonsense_Mutation	G	-	p.M65X
COAD	TCGA-D5-6540-01	HCK	ENST00000538448.1,ENST00000518730.1,ENST00000486475.1,ENST00000375862.2,ENST00000375852.2,ENST00000520553.1,ENST00000262651.3,ENST00000534862.1	chr20	30681665:30681819:30686806:30686938:30689119:30689322,	30686807	30686938	30686919	30686919	Nonsense_Mutation	C	G	p.Y432X
COAD	TCGA-CA-6717-01	HCLS1	ENST00000495491.1,ENST00000314583.3,ENST00000481314.1,ENST00000428394.2,ENST00000487290.1	chr3	121366165:121366295:121376125:121376199:121377110:121377194,	121376126	121376199	121376175	121376175	Nonsense_Mutation	G	A	p.R37X
COAD	TCGA-CM-5861-01	HDAC4	ENST00000446876.1,ENST00000463007.1,ENST00000535493.1,ENST00000345617.3,ENST00000493582.1	chr2	240098148:240098259:240111528:240111773:240158288:240158360,	240111529	240111773	240111561	240111561	Nonsense_Mutation	G	A	p.Q103X
COAD	TCGA-CM-5861-01	HDLBP	ENST00000442714.1	chr2	242196128:242196221:242202283:242202341:242203862:242204020,	242202284	242202341	242202287	242202287	Nonsense_Mutation	C	A	p.E133X
COAD	TCGA-CM-5861-01	HDLBP	ENST00000422933.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000428482.1,ENST00000452065.1,ENST00000310931.4	chr2	242196179:242196221:242202125:242202341:242203862:242204020,	242202126	242202341	242202287	242202287	Nonsense_Mutation	C	A	p.E133X
COAD	TCGA-AD-6890-01	HELQ	ENST00000508591.1,ENST00000295488.3	chr4	84367166:84367239:84367987:84368188:84369935:84370114,	84367988	84368188	84368032	84368032	Nonsense_Mutation	C	A	p.E450X
COAD	TCGA-CA-6718-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000380265.5,ENST00000506714.1	chr4	89306650:89306727:89311803:89312031:89314639:89314734,	89311804	89312031	89311819	89311819	Nonsense_Mutation	C	A	p.S151X
COAD	TCGA-CA-6718-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62194170:62194373:62199135:62199242:62200855:62201003,	62199136	62199242	62199167	62199167	Nonsense_Mutation	G	T	p.E269X
COAD	TCGA-CA-6717-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62203650:62203827:62204804:62205091:62207222:62207345,	62204805	62205091	62204876	62204876	Nonsense_Mutation	G	T	p.E441X
COAD	TCGA-AA-3713-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12123814	12123814	Nonsense_Mutation	G	A	p.W1262X
COAD	TCGA-AZ-4315-01	HK1	ENST00000494253.1,ENST00000360289.2,ENST00000404387.2,ENST00000448642.2,ENST00000298649.3,ENST00000359426.6	chr10	71136689:71136845:71139617:71139851:71142242:71142547,	71139618	71139851	71139646	71139646	Nonsense_Mutation	G	T	p.E358X
COAD	TCGA-AA-3492-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910692	29910692	Nonsense_Mutation	C	T	p.Q78X
COAD	TCGA-AA-3663-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911240	29911240	Nonsense_Mutation	T	A	p.L180X
COAD	TCGA-AZ-4615-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549571	32549571	Nonsense_Mutation	G	A	p.Q139X
COAD	TCGA-AA-3510-01	HMGCS2	ENST00000369406.3,ENST00000544913.2	chr1	120295171:120295297:120295902:120296009:120298049:120298220,	120295903	120296009	120295927	120295927	Nonsense_Mutation	G	A	p.R382X
COAD	TCGA-AZ-6598-01	HNF1A	ENST00000400024.2,ENST00000257555.6,ENST00000543427.1,ENST00000560968.1,ENST00000402929.1,ENST00000544413.1,ENST00000541395.1	chr12	121426635:121426835:121431322:121431509:121431966:121432003,	121431323	121431509	121431481	121431481	Nonsense_Mutation	C	T	p.R229X
COAD	TCGA-CM-5861-01	HNRNPAB	ENST00000504898.1,ENST00000358344.3	chr5	177634094:177634226:177636330:177636448:177637132:177637273,	177636331	177636448	177636376	177636376	Nonsense_Mutation	C	T	p.Q239X
COAD	TCGA-CM-5861-01	HNRNPAB	ENST00000506339.1	chr5	177634094:177634226:177636330:177636433:177637132:177637273,	177636331	177636433	177636376	177636376	Nonsense_Mutation	C	T	p.Q239X
COAD	TCGA-AZ-6598-01	HNRNPH3	ENST00000461310.1	chr10	70096955:70097090:70098259:70098444:70098896:70098958,	70098260	70098444	70098417	70098417	Nonsense_Mutation	C	T	p.R137X
COAD	TCGA-G4-6302-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41807440:41807609:41808569:41808854:41809876:41809961,	41808570	41808854	41808716	41808716	Nonsense_Mutation	C	T	p.R512X
COAD	TCGA-AD-6895-01	HORMAD1	ENST00000442853.1	chr1	150684020:150684047:150686560:150686597:150689613:150689758,	150686561	150686597	150686572	150686572	Nonsense_Mutation	G	A	p.Q90X
COAD	TCGA-F4-6570-01	HSD17B8	ENST00000374662.3,ENST00000469186.1	chr6	33173636:33173689:33173910:33173953:33174151:33174226,	33173911	33173953	33173932	33173932	Nonsense_Mutation	G	T	p.G225X
COAD	TCGA-AZ-4315-01	HSP90B1	ENST00000299767.5,ENST00000548462.1,ENST00000540297.2	chr12	104326058:104326196:104326603:104326720:104327733:104327768,	104326604	104326720	104326616	104326616	Nonsense_Mutation	G	T	p.E103X
COAD	TCGA-AA-3510-01	HSPA9	ENST00000297185.3,ENST00000507097.1	chr5	137895552:137895780:137897268:137897478:137902314:137902400,	137897269	137897478	137897307	137897307	Nonsense_Mutation	C	A	p.E382X
COAD	TCGA-AD-6889-01	HSPBAP1	ENST00000306103.2,ENST00000465044.1,ENST00000467643.1	chr3	122487547:122487729:122496567:122496753:122512463:122512507,	122496568	122496753	122496601	122496601	Nonsense_Mutation	G	A	p.R73X
COAD	TCGA-D5-6930-01	HSPG2	ENST00000430507.1,ENST00000374695.3	chr1	22180725:22180836:22181103:22181258:22181340:22181476,	22181104	22181258	22181133	22181133	Nonsense_Mutation	G	A	p.R2087X
COAD	TCGA-G4-6323-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3149731:3149934:3156019:3156146:3158798:3158926,	3156020	3156146	3156068	3156068	Nonsense_Mutation	C	T	p.R1183X
COAD	TCGA-CA-6718-01	ICA1	ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8178472:8178511:8178614:8178677:8181394:8181447,	8178615	8178677	8178656	8178656	Nonsense_Mutation	A	C	p.L326X
COAD	TCGA-D5-6930-01	IDO1	ENST00000522495.1,ENST00000523779.1,ENST00000518237.1,ENST00000253513.7	chr8	39782239:39782291:39782741:39782890:39785348:39785657,	39782742	39782890	39782875	39782875	Nonsense_Mutation	C	T	p.Q281X
COAD	TCGA-AZ-4315-01	IFI44	ENST00000438486.1	chr1	79115542:79115590:79116225:79116337:79119927:79119964,	79116226	79116337	79116328	79116328	Nonsense_Mutation	C	T	p.R150X
COAD	TCGA-AZ-4315-01	IFI44	ENST00000370747.4,ENST00000467790.1	chr1	79115542:79115590:79115870:79116337:79119927:79119964,	79115871	79116337	79116328	79116328	Nonsense_Mutation	C	T	p.R150X
COAD	TCGA-G4-6586-01	IFT27	ENST00000453009.2,ENST00000433985.2,ENST00000495555.2,ENST00000340630.5	chr22	37154254:37154453:37158947:37159057:37159962:37160080,	37158948	37159057	37159019	37159019	Nonsense_Mutation	G	A	p.R130X
COAD	TCGA-G4-6588-01	IFT57	ENST00000264538.3	chr3	107882509:107882576:107884277:107884340:107885700:107885832,	107884278	107884340	107884331	107884331	Nonsense_Mutation	G	A	p.R331X
COAD	TCGA-AD-6895-01	IGF1	ENST00000392904.1,ENST00000392905.2,ENST00000456098.1	chr12	102796294:102796344:102811732:102811781:102813286:102813468,	102811733	102811781	102811733	102811733	Nonsense_Mutation	C	A	p.G151X
COAD	TCGA-AZ-6598-01	IGF2R	ENST00000356956.1	chr6	160485432:160485563:160485835:160485933:160489280:160489417,	160485836	160485933	160485884	160485884	Nonsense_Mutation	C	T	p.R1356X
COAD	TCGA-D5-5539-01	IGSF9	ENST00000361509.3,ENST00000368094.1	chr1	159900939:159901051:159901242:159901393:159901601:159901718,	159901243	159901393	159901305	159901305	Nonsense_Mutation	C	T	p.W484X
COAD	TCGA-A6-5665-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912939	159912939	Nonsense_Mutation	G	A	p.R21X
COAD	TCGA-AZ-4315-01	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040381	103040381	Nonsense_Mutation	C	T	p.R61X
COAD	TCGA-F4-6569-01	IL1R1	ENST00000409929.1,ENST00000424272.1,ENST00000428279.1,ENST00000410023.1,ENST00000430171.1,ENST00000409329.1,ENST00000409288.1,ENST00000233946.3	chr2	102781233:102781468:102781574:102781764:102782572:102782719,	102781575	102781764	102781637	102781637	Nonsense_Mutation	T	G	p.L120X
COAD	TCGA-G4-6586-01	IL2RG	ENST00000456850.2,ENST00000374202.2,ENST00000276110.2	chrX	70328126:70328196:70328448:70328545:70329077:70329118,	70328449	70328545	70328453	70328453	Nonsense_Mutation	C	A	p.E284X
COAD	TCGA-CK-5913-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247869	55247869	Nonsense_Mutation	T	-	p.V530X
COAD	TCGA-D5-6930-01	ING4	ENST00000341550.4,ENST00000437149.2,ENST00000396807.4,ENST00000469749.1,ENST00000467678.1,ENST00000412586.2,ENST00000444704.2,ENST00000488381.1,ENST00000472002.1,ENST00000446105.2	chr12	6760530:6760551:6761436:6761584:6761827:6761933,	6761437	6761584	6761478	6761478	Nonsense_Mutation	G	A	p.Q179X
COAD	TCGA-D5-5537-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41352064:41352124:41361767:41361863:41362664:41362745,	41361768	41361863	41361849	41361849	Nonsense_Mutation	C	T	p.W567X
COAD	TCGA-AZ-4315-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134459371:134459472:134463921:134464009:134503895:134503959,	134463922	134464009	134463923	134463923	Nonsense_Mutation	G	T	p.E74X
COAD	TCGA-AM-5820-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134463921:134464009:134503895:134503959:134511319:134511423,	134503896	134503959	134503931	134503931	Nonsense_Mutation	A	-	p.L114X
COAD	TCGA-CK-5916-01	INSIG1	ENST00000340368.4	chr7	155090270:155090407:155094456:155094556:155099950:155100467,155093960:155094127:155094456:155094556:155099950:155100467,	155094457	155094556	155094542	155094542	Nonsense_Mutation	C	T	p.R264X
COAD	TCGA-A6-6141-01	IRF6	ENST00000542854.1	chr1	209968634:209968763:209969692:209969897:209974584:209974761,209968634:209968763:209969692:209969897:209979291:209979389,	209969693	209969897	209969798	209969798	Nonsense_Mutation	C	A	p.E92X
COAD	TCGA-CM-5861-01	ISCU	ENST00000338291.4,ENST00000539580.1,ENST00000392807.4	chr12	108956392:108956512:108957835:108957931:108958054:108958168,	108957836	108957931	108957929	108957929	Nonsense_Mutation	C	T	p.Q13X
COAD	TCGA-CA-6717-01	ISPD	ENST00000407010.2,ENST00000399310.3	chr7	16130816:16131424:16255690:16255822:16298014:16298107,	16255691	16255822	16255735	16255735	Nonsense_Mutation	C	A	p.E353X
COAD	TCGA-AA-3712-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145538217:145538307:145538723:145538808:145538979:145539093,	145538724	145538808	145538746	145538746	Nonsense_Mutation	G	T	p.E953X
COAD	TCGA-AZ-4315-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145538217:145538307:145538723:145538808:145538979:145539093,	145538724	145538808	145538788	145538788	Nonsense_Mutation	G	T	p.E967X
COAD	TCGA-AD-6964-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145539364:145539445:145539682:145539796:145541440:145541536,	145539683	145539796	145539728	145539728	Nonsense_Mutation	C	T	p.Q1054X
COAD	TCGA-CA-5796-01	ITGA4	ENST00000397033.2,ENST00000465522.1,ENST00000233573.6	chr2	182343483:182343551:182344863:182344993:182346324:182346410,	182344864	182344993	182344981	182344981	Nonsense_Mutation	G	T	p.G248X
COAD	TCGA-AZ-4315-01	ITGA5	ENST00000293379.4	chr12	54796970:54797108:54797408:54797563:54797694:54797750,	54797409	54797563	54797444	54797444	Nonsense_Mutation	G	A	p.R581X
COAD	TCGA-CA-6718-01	ITGAL	ENST00000356798.6	chr16	30486833:30486901:30492759:30492905:30495147:30495285,30490651:30490782:30492759:30492905:30495147:30495280,	30492760	30492905	30492796	30492796	Nonsense_Mutation	G	T	p.E122X
COAD	TCGA-CA-6717-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309259	46309259	Nonsense_Mutation	G	T	p.C603X
COAD	TCGA-AD-6901-01	ITIH5	ENST00000434980.1,ENST00000446830.2,ENST00000397146.2,ENST00000476417.1,ENST00000397145.2,ENST00000298441.6,ENST00000256861.6,ENST00000461751.1	chr10	7618854:7618975:7621717:7622027:7627863:7628032,	7621718	7622027	7621866	7621866	Nonsense_Mutation	G	A	p.R424X
COAD	TCGA-CM-6171-01	ITPKA	ENST00000260386.5,ENST00000462816.1	chr15	41794194:41794399:41794599:41794701:41794985:41795057,	41794600	41794701	41794645	41794645	Nonsense_Mutation	C	T	p.R352X
COAD	TCGA-AZ-4315-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4825499:4825604:4829630:4829823:4836748:4836871,	4829631	4829823	4829796	4829796	Nonsense_Mutation	G	T	p.E2213X
COAD	TCGA-AZ-4315-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3,ENST00000488166.1	chr21	35138178:35138316:35140016:35140132:35144364:35144586,	35140017	35140132	35140024	35140024	Nonsense_Mutation	C	T	p.R312X
COAD	TCGA-G4-6588-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4,ENST00000412011.1	chr2	24521533:24521683:24522777:24523040:24524022:24524108,	24522778	24523040	24522816	24522816	Nonsense_Mutation	G	A	p.R436X
COAD	TCGA-G4-6302-01	JAKMIP2	ENST00000265272.5,ENST00000507386.1,ENST00000333010.6	chr5	146991868:146991934:146997473:146997677:147000228:147000306,	146997474	146997677	146997590	146997590	Nonsense_Mutation	G	A	p.Q744X
COAD	TCGA-G4-6588-01	JUP	ENST00000393930.1,ENST00000393931.3,ENST00000310706.5	chr17	39913885:39914036:39914650:39914770:39914966:39915122,	39914651	39914770	39914755	39914755	Nonsense_Mutation	C	A	p.E557X
COAD	TCGA-D5-6534-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740088	62740088	Nonsense_Mutation	C	A	p.E230X
COAD	TCGA-AZ-6598-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44249215	44249215	Nonsense_Mutation	G	A	p.Q99X
COAD	TCGA-CM-6162-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44249368	44249368	Nonsense_Mutation	C	A	p.G48X
COAD	TCGA-AA-3510-01	KCTD10	ENST00000537165.1	chr12	109895434:109895487:109895796:109895886:109898440:109898610,	109895797	109895886	109895804	109895804	Nonsense_Mutation	G	T	p.S156X
COAD	TCGA-AA-3510-01	KCTD10	ENST00000542858.1	chr12	109895434:109895487:109895796:109895853:109898440:109898610,	109895797	109895853	109895804	109895804	Nonsense_Mutation	G	T	p.S156X
COAD	TCGA-AA-3510-01	KCTD10	ENST00000538161.1,ENST00000540411.1,ENST00000228495.6	chr12	109895434:109895487:109895796:109895883:109898440:109898610,	109895797	109895883	109895804	109895804	Nonsense_Mutation	G	T	p.S156X
COAD	TCGA-AA-3510-01	KCTD10	ENST00000541077.1	chr12	109895434:109895487:109895796:109895989:109898440:109898610,	109895797	109895989	109895804	109895804	Nonsense_Mutation	G	T	p.S156X
COAD	TCGA-AZ-6601-01	KCTD20	ENST00000536244.1,ENST00000265344.4,ENST00000373731.2	chr6	36437828:36438034:36449338:36449536:36452490:36452601,36447367:36447488:36449338:36449536:36452490:36452601,	36449339	36449536	36449446	36449446	Nonsense_Mutation	C	T	p.R256X
COAD	TCGA-G4-6628-01	KCTD9	ENST00000518997.1,ENST00000521458.1,ENST00000221200.4,ENST00000524217.1	chr8	25298139:25298189:25301807:25301851:25303644:25303766,	25301808	25301851	25301823	25301823	Nonsense_Mutation	C	A	p.G67X
COAD	TCGA-A6-6781-01	KDM3B	ENST00000314358.5	chr5	137717204:137717279:137721710:137722310:137726701:137727950,	137721711	137722310	137721891	137721891	Nonsense_Mutation	C	T	p.R321X
COAD	TCGA-DM-A1D8-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727672	137727672	Nonsense_Mutation	C	A	p.S784X
COAD	TCGA-CM-5863-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53225097:53225236:53225867:53226226:53226952:53227058,	53225868	53226226	53225900	53225900	Nonsense_Mutation	C	T	p.W983X
COAD	TCGA-A6-5665-01	KIAA0556	ENST00000261588.4	chr16	27751361:27752241:27760904:27761627:27763039:27763245,	27760905	27761627	27761540	27761540	Nonsense_Mutation	C	T	p.R1087X
COAD	TCGA-D5-7000-01	KIAA0825	ENST00000513200.3,ENST00000329378.7,ENST00000427991.2,ENST00000312498.7	chr5	93855952:93856622:93859634:93859803:93872700:93872831,	93859635	93859803	93859772	93859772	Nonsense_Mutation	C	A	p.E55X
COAD	TCGA-G4-6586-01	KIAA0930	ENST00000251993.7,ENST00000488038.1,ENST00000443310.3,ENST00000423262.1,ENST00000391627.2,ENST00000336156.5	chr22	45595753:45595916:45598870:45599065:45599725:45599866,	45598871	45599065	45598945	45598945	Nonsense_Mutation	G	A	p.R265X
COAD	TCGA-CA-6717-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123111154:123111234:123113383:123113534:123117789:123117946,	123113384	123113534	123113407	123113407	Nonsense_Mutation	G	T	p.E309X
COAD	TCGA-CA-6717-01	KIAA1958	ENST00000536272.1,ENST00000374244.3	chr9	115249357:115249398:115336336:115337531:115380150:115380234,	115336337	115337531	115336996	115336996	Nonsense_Mutation	C	A	p.Y212X
COAD	TCGA-AZ-6598-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5969206	5969206	Nonsense_Mutation	G	T	p.S342X
COAD	TCGA-AZ-4315-01	KIF3A	ENST00000403231.1,ENST00000378735.1	chr5	132062045:132062190:132069896:132070170:132073105:132073111,	132069897	132070170	132070011	132070011	Nonsense_Mutation	C	A	p.E56X
COAD	TCGA-CA-6718-01	KIF5B	ENST00000302418.4	chr10	32306979:32307084:32307243:32307315:32307429:32307490,	32307244	32307315	32307309	32307309	Nonsense_Mutation	C	A	p.E792X
COAD	TCGA-AZ-6598-01	KIN	ENST00000535925.1,ENST00000543003.1,ENST00000460089.1,ENST00000379562.4	chr10	7808015:7808066:7811178:7811308:7816793:7816841,	7811179	7811308	7811250	7811250	Nonsense_Mutation	C	A	p.E243X
COAD	TCGA-AA-3663-01	KLHL18	ENST00000455924.2,ENST00000442272.1	chr3	47324448:47324584:47364057:47364198:47371440:47371639,	47364058	47364198	47364152	47364152	Nonsense_Mutation	C	T	p.Q119X
COAD	TCGA-G4-6626-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86312255	86312255	Nonsense_Mutation	T	A	p.K263X
COAD	TCGA-CM-6674-01	KRIT1	ENST00000394505.2,ENST00000340022.2,ENST00000394503.2,ENST00000394507.1,ENST00000412043.2	chr7	91864121:91864237:91864716:91864960:91865726:91865856,	91864717	91864960	91864911	91864911	Nonsense_Mutation	G	A	p.R179X
COAD	TCGA-CA-6717-01	KRT40	ENST00000461923.1,ENST00000398486.2	chr17	39139297:39139380:39140078:39140526:39142555:39142626,	39140079	39140526	39140159	39140159	Nonsense_Mutation	C	A	p.E123X
COAD	TCGA-CM-6162-01	KRT5	ENST00000548409.1,ENST00000552629.1,ENST00000549511.1,ENST00000252242.4	chr12	52910560:52910641:52910890:52911016:52911373:52911538,	52910891	52911016	52911001	52911001	Nonsense_Mutation	G	A	p.Q370X
COAD	TCGA-CA-6717-01	LACTB2	ENST00000276590.4,ENST00000522447.1	chr8	71550785:71550864:71553136:71553285:71556299:71556363,	71553137	71553285	71553174	71553174	Nonsense_Mutation	G	T	p.S235X
COAD	TCGA-AZ-5403-01	LAMTOR2	ENST00000463371.1	chr1	156025053:156025216:156027768:156027858:156028105:156028297,156025361:156025466:156027768:156027858:156028105:156028297,	156027769	156027858	156027790	156027790	Nonsense_Mutation	C	T	p.R85X
COAD	TCGA-CA-6717-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000354456.3,ENST00000427266.1,ENST00000512292.1,ENST00000507377.1	chr4	129028293:129028468:129035724:129035897:129042980:129043343,	129035725	129035897	129035844	129035844	Nonsense_Mutation	G	T	p.E370X
COAD	TCGA-F4-6809-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000550260.1,ENST00000522085.1,ENST00000548993.1,ENST00000347328.5,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50824280:50824353:50829270:50829407:50831517:50831561,	50829271	50829407	50829294	50829295	Nonsense_Mutation	-	AC	p.Y141_L142delinsX
COAD	TCGA-CM-4743-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890957	890957	Nonsense_Mutation	G	A	p.R157X
COAD	TCGA-CA-6718-01	LCA5	ENST00000392959.1,ENST00000467898.3,ENST00000369846.4	chr6	80203329:80203467:80222928:80223458:80228421:80228802,	80222929	80223458	80223132	80223132	Nonsense_Mutation	C	A	p.E173X
COAD	TCGA-AA-3510-01	LCP2	ENST00000520344.1,ENST00000046794.5,ENST00000521416.1	chr5	169685869:169685882:169688110:169688141:169689638:169689746,	169688111	169688141	169688116	169688116	Nonsense_Mutation	C	A	p.E318X
COAD	TCGA-AD-6895-01	LEO1	ENST00000315141.5	chr15	52254585:52254690:52257945:52258701:52263884:52263973,	52257946	52258701	52258354	52258354	Nonsense_Mutation	C	A	p.E136X
COAD	TCGA-F4-6856-01	LIG1	ENST00000601091.1,ENST00000594067.1,ENST00000263274.7,ENST00000536218.1,ENST00000594759.1,ENST00000427526.2	chr19	48640264:48640341:48640778:48640945:48643227:48643400,	48640779	48640945	48640865	48640865	Nonsense_Mutation	G	A	p.Q390X
COAD	TCGA-F4-6856-01	LIG1	ENST00000542460.1	chr19	48640264:48640341:48640778:48641016:48643227:48643400,	48640779	48641016	48640865	48640865	Nonsense_Mutation	G	A	p.Q390X
COAD	TCGA-A6-6780-01	LIMCH1	ENST00000511496.1	chr4	41600936:41601043:41607910:41608021:41615482:41615551,	41607911	41608021	41608016	41608016	Nonsense_Mutation	C	T	p.R161X
COAD	TCGA-D5-6927-01	LIN54	ENST00000510557.1,ENST00000446851.2,ENST00000508171.1,ENST00000506560.1,ENST00000442461.2,ENST00000340417.3,ENST00000505397.1,ENST00000395282.2,ENST00000395283.2,ENST00000510877.1	chr4	83852095:83852298:83857133:83857271:83857431:83857534,	83857134	83857271	83857172	83857172	Nonsense_Mutation	G	A	p.R382X
COAD	TCGA-F4-6857-01	LMO7	ENST00000465261.2,ENST00000321797.8,ENST00000377534.3,ENST00000357063.3	chr13	76378455:76378677:76379614:76379896:76381615:76381823,	76379615	76379896	76379872	76379872	Nonsense_Mutation	G	A	p.W158X
COAD	TCGA-CA-6718-01	LONP2	ENST00000285737.4,ENST00000566755.1,ENST00000535754.1,ENST00000565867.2	chr16	48368222:48368269:48381417:48381625:48382010:48382201,	48381418	48381625	48381505	48381505	Nonsense_Mutation	C	T	p.R676X
COAD	TCGA-CA-6717-01	LOXHD1	ENST00000579038.1,ENST00000335730.2,ENST00000300591.6,ENST00000398722.4,ENST00000441551.2,ENST00000536736.1,ENST00000441893.2,ENST00000582408.1	chr18	44104670:44104880:44109139:44109294:44113124:44113287,	44109140	44109294	44109190	44109190	Nonsense_Mutation	G	A	p.R383X
COAD	TCGA-CM-6674-01	LPAR2	ENST00000407877.3	chr19	19734477:19735378:19737351:19738093:19738900:19738976,	19737352	19738093	19737442	19737442	Nonsense_Mutation	G	A	p.R218X
COAD	TCGA-AA-3510-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151336589:151336742:151356740:151356860:151357875:151358009,	151356741	151356860	151356803	151356803	Nonsense_Mutation	G	A	p.R2338X
COAD	TCGA-AZ-4315-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169996997	169996997	Nonsense_Mutation	G	T	p.C4389X
COAD	TCGA-CA-6717-01	LRRC49	ENST00000559806.1,ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558808.1,ENST00000558456.1,ENST00000560107.2,ENST00000561081.1,ENST00000560980.1,ENST00000260382.5,ENST00000443425.2,ENST00000560691.1	chr15	71256123:71256271:71272439:71272523:71276432:71276544,	71272440	71272523	71272443	71272443	Nonsense_Mutation	G	T	p.E309X
COAD	TCGA-D5-6928-01	LRRFIP2	ENST00000354379.4,ENST00000416425.1,ENST00000421276.2,ENST00000440230.1	chr3	37138106:37138151:37170553:37170640:37190384:37190529,	37170554	37170640	37170568	37170568	Nonsense_Mutation	G	A	p.R55X
COAD	TCGA-AZ-4315-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449610	85449610	Nonsense_Mutation	G	T	p.E347X
COAD	TCGA-A6-6141-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507399	74507399	Nonsense_Mutation	C	A	p.E406X
COAD	TCGA-A6-6141-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507399	74507399	Nonsense_Mutation	C	A	p.E406X
COAD	TCGA-CA-6718-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713869	40713869	Nonsense_Mutation	C	A	p.S1636X
COAD	TCGA-AZ-6598-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713870	40713870	Nonsense_Mutation	A	-	p.S1636X
COAD	TCGA-AA-3713-01	LSM1	ENST00000520286.1,ENST00000311351.4,ENST00000522515.1	chr8	38021127:38021358:38027319:38027435:38029482:38029546,	38027320	38027435	38027409	38027409	Nonsense_Mutation	C	A	p.E48X
COAD	TCGA-CA-6717-01	LSM14A	ENST00000540746.2,ENST00000588582.2,ENST00000544216.3,ENST00000586157.1,ENST00000433627.5	chr19	34706500:34706566:34710295:34710478:34710610:34710782,	34710296	34710478	34710473	34710473	Nonsense_Mutation	T	A	p.L320X
COAD	TCGA-AZ-4315-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000422669.1,ENST00000272273.5,ENST00000354476.3,ENST00000418533.2	chr2	33572433:33572577:33585663:33585846:33586495:33586582,	33585664	33585846	33585705	33585705	Nonsense_Mutation	G	T	p.E1022X
COAD	TCGA-AZ-4315-01	LTBP1	ENST00000402934.1	chr2	33572433:33572577:33585669:33585846:33586495:33586582,	33585670	33585846	33585705	33585705	Nonsense_Mutation	G	T	p.E1022X
COAD	TCGA-AA-3510-01	LYG1	ENST00000308528.4,ENST00000409448.1	chr2	99900719:99900974:99901150:99901283:99907699:99907884,	99901151	99901283	99901199	99901199	Nonsense_Mutation	C	A	p.E140X
COAD	TCGA-CA-6718-01	LYG1	ENST00000308528.4,ENST00000409448.1	chr2	99900719:99900974:99901150:99901283:99907699:99907884,	99901151	99901283	99901199	99901199	Nonsense_Mutation	C	A	p.E140X
COAD	TCGA-A6-6653-01	LYPD6B	ENST00000409029.1,ENST00000409642.3,ENST00000498249.1,ENST00000280115.7,ENST00000409876.1	chr2	150061766:150061918:150064827:150064926:150069505:150069636,	150064828	150064926	150064896	150064896	Nonsense_Mutation	C	T	p.R100X
COAD	TCGA-AD-6888-01	LYST	ENST00000475277.1,ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235880011:235880078:235883960:235884205:235887327:235887480,	235883961	235884205	235884120	235884120	Nonsense_Mutation	A	C	p.L3134X
COAD	TCGA-D5-5537-01	MAMDC4	ENST00000317446.2,ENST00000445819.1	chr9	139746830:139746914:139747553:139747661:139747736:139747910,	139747554	139747661	139747570	139747570	Nonsense_Mutation	G	A	p.W21X
COAD	TCGA-AZ-4315-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210558767	210558767	Nonsense_Mutation	G	T	p.E625X
COAD	TCGA-AZ-4315-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210558767	210558767	Nonsense_Mutation	G	T	p.E625X
COAD	TCGA-CA-6717-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559248	210559248	Nonsense_Mutation	C	A	p.S785X
COAD	TCGA-CA-6717-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559248	210559248	Nonsense_Mutation	C	A	p.S785X
COAD	TCGA-CA-6718-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602375.1,ENST00000582377.1,ENST00000602811.1,ENST00000582183.1,ENST00000579089.1,ENST00000602305.1,ENST00000581941.1,ENST00000602537.1	chr17	11998918:11999011:12011106:12011226:12013691:12013743,	12011107	12011226	12011200	12011200	Nonsense_Mutation	G	T	p.E203X
COAD	TCGA-AA-3713-01	MAP4	ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47898920:47899002:47908735:47908828:47912302:47912595,47898920:47899002:47908735:47908828:47910703:47910817,	47908736	47908828	47908808	47908808	Nonsense_Mutation	T	-	p.V999X
COAD	TCGA-CK-5913-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102460562:102460773:102472438:102472600:102475457:102475544,	102472439	102472600	102472487	102472487	Nonsense_Mutation	C	T	p.R428X
COAD	TCGA-A6-5665-01	MARK1	ENST00000402574.1,ENST00000366918.4,ENST00000366917.4	chr1	220809174:220809368:220823961:220824062:220825327:220825492,	220823962	220824062	220824028	220824028	Nonsense_Mutation	C	T	p.R513X
COAD	TCGA-CA-6716-01	MARS	ENST00000548674.1,ENST00000315473.5,ENST00000545888.2	chr12	57883049:57883128:57883206:57883341:57883678:57883754,57883049:57883128:57883206:57883341:57883989:57883999,	57883207	57883341	57883318	57883318	Nonsense_Mutation	C	T	p.Q131X
COAD	TCGA-CA-6716-01	MARS	ENST00000550449.1	chr12	57882801:57882892:57883049:57883341:57883678:57883754,	57883050	57883341	57883318	57883318	Nonsense_Mutation	C	T	p.Q131X
COAD	TCGA-CA-6716-01	MARS	ENST00000547501.1	chr12	57883049:57883128:57883237:57883341:57883678:57883754,	57883238	57883341	57883318	57883318	Nonsense_Mutation	C	T	p.Q131X
COAD	TCGA-AA-3663-01	MATK	ENST00000590493.1,ENST00000585778.1,ENST00000395040.2,ENST00000310132.6,ENST00000587180.1,ENST00000395045.2	chr19	3779786:3779795:3781604:3781670:3783123:3783217,	3781605	3781670	3781623	3781623	Nonsense_Mutation	C	A	p.G201X
COAD	TCGA-AD-5900-01	MBOAT1	ENST00000536798.1,ENST00000324607.7	chr6	20151415:20151493:20152854:20153000:20212366:20212630,	20152855	20153000	20152983	20152983	Nonsense_Mutation	G	T	p.C39X
COAD	TCGA-AA-3660-01	MCCC1	ENST00000486226.1	chr3	182804480:182804576:182812346:182812393:182817139:182817283,182790214:182790275:182812346:182812393:182817139:182817283,182810196:182810333:182812346:182812393:182817139:182817283,	182812347	182812393	182812387	182812387	Nonsense_Mutation	C	T	p.W32X
COAD	TCGA-D5-6930-01	MCCC2	ENST00000512218.2	chr5	70936829:70936910:70939597:70939722:70942037:70942104,	70939598	70939722	70939654	70939654	Nonsense_Mutation	C	T	p.R361X
COAD	TCGA-A6-6780-01	MCM6	ENST00000264156.2	chr2	136605725:136605758:136608971:136609133:136610356:136610485,	136608972	136609133	136609034	136609034	Nonsense_Mutation	G	A	p.R619X
COAD	TCGA-AZ-4315-01	MCOLN3	ENST00000341115.4	chr1	85498554:85498639:85499780:85499934:85506692:85506860,85498554:85498639:85499780:85499934:85510815:85511045,	85499781	85499934	85499838	85499838	Nonsense_Mutation	G	A	p.R109X
COAD	TCGA-AZ-4315-01	MCTP2	ENST00000456504.1,ENST00000451018.3,ENST00000357742.4	chr15	95013561:95013671:95019924:95020022:95022194:95022263,	95019925	95020022	95019951	95019951	Nonsense_Mutation	C	T	p.R778X
COAD	TCGA-CM-4743-01	ME2	ENST00000585680.1	chr18	48452229:48452268:48458627:48458730:48466657:48466756,	48458628	48458730	48458685	48458685	Nonsense_Mutation	C	T	p.R458X
COAD	TCGA-DM-A28M-01	MED27	ENST00000292035.5	chr9	134759444:134759486:134769271:134769379:134814767:134814861,	134769272	134769379	134769356	134769356	Nonsense_Mutation	T	-	p.V200X
COAD	TCGA-A6-6781-01	MEST	ENST00000416162.2,ENST00000378576.4,ENST00000427521.1	chr7	130139715:130139756:130140302:130140373:130140629:130140731,130139715:130139756:130140302:130140373:130142484:130142561,	130140303	130140373	130140342	130140342	Nonsense_Mutation	C	T	p.R197X
COAD	TCGA-CA-6718-01	MET	ENST00000539704.1,ENST00000397752.3,ENST00000318493.6	chr7	116417442:116417523:116418829:116419011:116422041:116422151,	116418830	116419011	116418997	116418997	Nonsense_Mutation	C	T	p.R1170X
COAD	TCGA-CA-6717-01	METAP2	ENST00000546753.1,ENST00000550777.1,ENST00000551840.1,ENST00000323666.5,ENST00000261220.9	chr12	95897840:95897937:95905670:95905774:95906576:95906692,	95905671	95905774	95905701	95905701	Nonsense_Mutation	C	A	p.S332X
COAD	TCGA-AA-3510-01	MFF	ENST00000337110.7,ENST00000304593.9,ENST00000354503.6,ENST00000349901.7	chr2	228190158:228190258:228195341:228195562:228197134:228197215,228190080:228190143:228195341:228195562:228197134:228197215,228194321:228194499:228195341:228195562:228197134:228197215,228193393:228193505:228195341:228195562:228197134:228197215,	228195342	228195562	228195397	228195397	Nonsense_Mutation	C	T	p.R32X
COAD	TCGA-AA-3510-01	MFF	ENST00000460756.1	chr2	228190080:228190143:228193393:228195562:228197134:228197215,	228193394	228195562	228195397	228195397	Nonsense_Mutation	C	T	p.R32X
COAD	TCGA-AA-3510-01	MFF	ENST00000489696.1	chr2	228193393:228193505:228195310:228195562:228197134:228197215,	228195311	228195562	228195397	228195397	Nonsense_Mutation	C	T	p.R32X
COAD	TCGA-CM-5348-01	MFSD8	ENST00000541133.1,ENST00000508441.1	chr4	128861007:128861152:128863199:128863313:128864906:128865147,128859937:128859993:128863199:128863313:128864906:128865147,	128863200	128863313	128863227	128863227	Nonsense_Mutation	G	A	p.Q176X
COAD	TCGA-AZ-4315-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021428	42021428	Nonsense_Mutation	C	T	p.R1242X
COAD	TCGA-A6-6141-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42046634:42046765:42049985:42050037:42052520:42052727,	42049986	42050037	42050032	42050032	Nonsense_Mutation	C	T	p.R2396X
COAD	TCGA-A6-5665-01	MGAT4A	ENST00000393487.1,ENST00000409391.1,ENST00000484936.1	chr2	99291497:99291638:99294766:99294934:99342701:99343030,	99294767	99294934	99294930	99294930	Nonsense_Mutation	T	-	p.L34X
COAD	TCGA-A6-5665-01	MICALL1	ENST00000215957.6	chr22	38315042:38315185:38317978:38318433:38320666:38320724,	38317979	38318433	38318139	38318139	Nonsense_Mutation	C	T	p.Q244X
COAD	TCGA-AA-3510-01	MIPEP	ENST00000382172.3	chr13	24444151:24444334:24448984:24449048:24453406:24453493,	24448985	24449048	24448990	24448990	Nonsense_Mutation	C	A	p.E200X
COAD	TCGA-AZ-4315-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514366	75514366	Nonsense_Mutation	C	A	p.E665X
COAD	TCGA-D5-5539-01	MMP13	ENST00000260302.3,ENST00000340273.4	chr11	102816374:102816478:102818619:102818779:102819753:102819887,	102818620	102818779	102818623	102818623	Nonsense_Mutation	C	T	p.W403X
COAD	TCGA-G4-6628-01	MRPL18	ENST00000367034.4,ENST00000476826.1,ENST00000480842.1	chr6	160211978:160212158:160218318:160218550:160219083:160219345,	160218319	160218550	160218323	160218323	Nonsense_Mutation	C	T	p.R82X
COAD	TCGA-D5-6928-01	MRPS10	ENST00000053468.3	chr6	42179518:42179655:42181857:42181930:42182017:42182082,	42181858	42181930	42181908	42181908	Nonsense_Mutation	G	A	p.Q46X
COAD	TCGA-AZ-4315-01	MRVI1	ENST00000527509.2,ENST00000531107.1,ENST00000421747.1,ENST00000534266.2,ENST00000552103.1,ENST00000424001.1,ENST00000545852.1,ENST00000529448.1,ENST00000547195.1,ENST00000558540.1,ENST00000436272.1,ENST00000423302.2	chr11	10645324:10645403:10647512:10648130:10649262:10649304,	10647513	10648130	10647680	10647680	Nonsense_Mutation	C	A	p.E310X
COAD	TCGA-G4-6586-01	MSH5	ENST00000375755.3,ENST00000431848.2,ENST00000395853.1,ENST00000375750.3,ENST00000375742.3,ENST00000463144.1,ENST00000534153.4	chr6	31727866:31727993:31728466:31728616:31728964:31729039,	31728467	31728616	31728554	31728554	Nonsense_Mutation	C	T	p.R651X
COAD	TCGA-A6-6141-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16026014	16026014	Nonsense_Mutation	C	A	p.E195X
COAD	TCGA-CA-6717-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16026263	16026263	Nonsense_Mutation	C	A	p.E112X
COAD	TCGA-CA-6718-01	MTDH	ENST00000522313.1,ENST00000519934.1	chr8	98657020:98657115:98673299:98673401:98698895:98698980,	98673300	98673401	98673342	98673342	Nonsense_Mutation	C	T	p.R142X
COAD	TCGA-G4-6310-01	MTDH	ENST00000336273.3,ENST00000522104.1,ENST00000519934.1	chr8	98718853:98718978:98725889:98725997:98735106:98735263,98718853:98718978:98725889:98725997:98731276:98731315,	98725890	98725997	98725894	98725894	Nonsense_Mutation	C	G	p.S426X
COAD	TCGA-CA-6718-01	MTMR11	ENST00000482025.1,ENST00000492824.1,ENST00000406732.3	chr1	149902683:149902857:149903835:149903906:149904155:149904222,	149903836	149903906	149903896	149903896	Nonsense_Mutation	G	A	p.R283X
COAD	TCGA-A6-6781-01	MTMR1	ENST00000538506.1,ENST00000488357.1	chrX	149901013:149901202:149905713:149905920:149912832:149912925,	149905714	149905920	149905864	149905864	Nonsense_Mutation	G	T	p.G465X
COAD	TCGA-CA-6717-01	MTRR	ENST00000514369.1,ENST00000510279.1	chr5	7869260:7869302:7870882:7871036:7875370:7875423,7869306:7869328:7870882:7871036:7875370:7875423,	7870883	7871036	7870968	7870968	Nonsense_Mutation	G	T	p.E21X
COAD	TCGA-CM-5864-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2,ENST00000360084.5	chr13	77699470:77699603:77700452:77700677:77713330:77713471,	77700453	77700677	77700455	77700455	Nonsense_Mutation	C	A	p.E2628X
COAD	TCGA-AZ-6607-01	MYO18A	ENST00000354329.4,ENST00000530254.2,ENST00000527372.1,ENST00000531253.1,ENST00000533112.1	chr17	27421953:27422077:27423778:27423933:27424240:27424368,	27423779	27423933	27423864	27423864	Nonsense_Mutation	G	A	p.R1434X
COAD	TCGA-D5-6928-01	MYO1C	ENST00000571615.1,ENST00000545534.2,ENST00000575158.1,ENST00000359786.5,ENST00000361007.2,ENST00000438665.2,ENST00000575864.1	chr17	1374427:1374441:1374516:1374630:1375200:1375318,	1374517	1374630	1374557	1374557	Nonsense_Mutation	G	A	p.R680X
COAD	TCGA-CA-6717-01	MYO3B	ENST00000442690.1,ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171055761:171055901:171056659:171056794:171070888:171070993,	171056660	171056794	171056672	171056672	Nonsense_Mutation	G	T	p.E67X
COAD	TCGA-CA-6717-01	MYO3B	ENST00000442690.1,ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2	chr2	171092500:171092646:171191894:171191960:171225731:171225887,	171191895	171191960	171191938	171191938	Nonsense_Mutation	G	T	p.E265X
COAD	TCGA-CA-6717-01	MYRIP	ENST00000475082.1,ENST00000458292.1,ENST00000302541.6,ENST00000425621.1,ENST00000444716.1	chr3	40085540:40085762:40192538:40192675:40204220:40204301,	40192539	40192675	40192648	40192648	Nonsense_Mutation	G	T	p.E148X
COAD	TCGA-CA-6718-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000585505.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41342625:41342793:41343388:41343598:41345110:41345270,	41343389	41343598	41343477	41343477	Nonsense_Mutation	G	T	p.E318X
COAD	TCGA-CM-6168-01	NCKAP1L	ENST00000548221.1,ENST00000293373.6,ENST00000545638.2	chr12	54920311:54920530:54922030:54922161:54925043:54925141,	54922031	54922161	54922031	54922031	Nonsense_Mutation	G	A	p.W742X
COAD	TCGA-D5-5541-01	NCOA2	ENST00000518363.2,ENST00000267974.4,ENST00000452400.2,ENST00000518287.2	chr8	71036922:71037100:71039047:71039282:71040667:71040745,	71039048	71039282	71039198	71039198	Nonsense_Mutation	G	A	p.Q1256X
COAD	TCGA-G4-6588-01	NDRG2	ENST00000554379.1,ENST00000557198.1,ENST00000557353.1,ENST00000554143.1	chr14	21490550:21490656:21491399:21491480:21493187:21493206,	21491400	21491480	21491453	21491453	Nonsense_Mutation	G	A	p.Q8X
COAD	TCGA-AD-6889-01	NDUFA4	ENST00000339600.5,ENST00000470761.1	chr7	10973291:10973319:10977716:10977774:10978434:10978523,	10977717	10977774	10977771	10977771	Nonsense_Mutation	C	T	p.W45X
COAD	TCGA-AZ-4315-01	NDUFB5	ENST00000359944.6,ENST00000480374.1	chr3	179322694:179322727:179332739:179332847:179333770:179333837,	179332740	179332847	179332767	179332767	Nonsense_Mutation	C	T	p.R45X
COAD	TCGA-AZ-4315-01	NDUFB5	ENST00000259037.3	chr3	179322694:179322727:179332758:179332847:179333770:179333837,	179332759	179332847	179332767	179332767	Nonsense_Mutation	C	T	p.R45X
COAD	TCGA-G4-6303-01	NDUFS1	ENST00000498520.1,ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	206992520:206992696:206994811:206994966:206997668:206997693,	206994812	206994966	206994851	206994851	Nonsense_Mutation	G	A	p.R521X
COAD	TCGA-AD-6899-01	NDUFS2	ENST00000392179.4,ENST00000496553.1,ENST00000478866.1,ENST00000367993.3,ENST00000496133.1	chr1	161172165:161172270:161176196:161176387:161178982:161179096,161173226:161173333:161176196:161176387:161178982:161179096,	161176197	161176387	161176280	161176280	Nonsense_Mutation	C	T	p.R96X
COAD	TCGA-D5-6927-01	NDUFV2	ENST00000400033.1,ENST00000465096.1,ENST00000318388.6	chr18	9119471:9119588:9122510:9122679:9124871:9124981,	9122511	9122679	9122637	9122637	Nonsense_Mutation	C	T	p.R143X
COAD	TCGA-CA-6718-01	NEK3	ENST00000452082.2,ENST00000548127.1,ENST00000258597.5,ENST00000400357.2,ENST00000552973.1,ENST00000378101.2,ENST00000339406.3	chr13	52728029:52728127:52728214:52728308:52730209:52730383,	52728215	52728308	52728227	52728227	Nonsense_Mutation	C	A	p.E67X
COAD	TCGA-AA-3510-01	NELL2	ENST00000547751.1,ENST00000452445.2,ENST00000550313.1,ENST00000333837.4,ENST00000551601.1,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	45059266:45059392:45097508:45097637:45105074:45105177,	45097509	45097637	45097533	45097533	Nonsense_Mutation	G	A	p.R432X
COAD	TCGA-CA-6717-01	NELL2	ENST00000547751.1,ENST00000452445.2,ENST00000550313.1,ENST00000333837.4,ENST00000551601.1,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	45059266:45059392:45097508:45097637:45105074:45105177,	45097509	45097637	45097554	45097554	Nonsense_Mutation	G	A	p.R425X
COAD	TCGA-CA-6718-01	NFIX	ENST00000592199.1	chr19	13106651:13106678:13135834:13136366:13183860:13183923,	13135835	13136366	13136327	13136327	Nonsense_Mutation	G	T	p.E174X
COAD	TCGA-D5-6927-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17743982	17743982	Nonsense_Mutation	C	T	p.R409X
COAD	TCGA-AD-6889-01	NINL	ENST00000422516.1	chr20	25456678:25457725:25459558:25459842:25460796:25460903,25450626:25450731:25459558:25459842:25460796:25460903,	25459559	25459842	25459618	25459618	Nonsense_Mutation	G	T	p.C714X
COAD	TCGA-G4-6302-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	36995851:36995906:37000474:37000672:37000918:37000990,	37000475	37000672	37000615	37000615	Nonsense_Mutation	C	T	p.R1149X
COAD	TCGA-A6-6781-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37059004:37059267:37060945:37061120:37063891:37064080,	37060946	37061120	37061004	37061004	Nonsense_Mutation	C	T	p.R2582X
COAD	TCGA-AA-3663-01	NIPSNAP1	ENST00000216121.7,ENST00000437094.1,ENST00000415100.1	chr22	29957159:29957191:29957494:29957635:29957780:29957851,	29957495	29957635	29957620	29957620	Nonsense_Mutation	G	A	p.R152X
COAD	TCGA-F4-6806-01	NLGN4X	ENST00000275857.6,ENST00000381095.3,ENST00000538097.1,ENST00000381092.1,ENST00000381093.2	chrX	5821117:5821907:5827094:5827280:5947320:5947473,	5827095	5827280	5827227	5827227	Nonsense_Mutation	G	A	p.Q227X
COAD	TCGA-AD-6964-01	NLRC5	ENST00000538805.1,ENST00000262510.6,ENST00000538778.1,ENST00000540182.1,ENST00000538930.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000538110.1,ENST00000539144.1,ENST00000543030.1,ENST00000436936.1,ENST00000534931.1	chr16	57085449:57085533:57088662:57088752:57088943:57088948,	57088663	57088752	57088670	57088670	Nonsense_Mutation	C	T	p.Q1172X
COAD	TCGA-AA-3510-01	NLRP1	ENST00000544378.2,ENST00000262467.5	chr17	5405056:5405192:5421065:5421207:5424200:5424332,	5421066	5421207	5421177	5421177	Nonsense_Mutation	C	A	p.E1242X
COAD	TCGA-AD-6889-01	NLRP1	ENST00000577119.1,ENST00000354411.3	chr17	5437216:5437308:5442734:5442905:5445176:5445347,	5442735	5442905	5442787	5442787	Nonsense_Mutation	G	A	p.R940X
COAD	TCGA-CA-6718-01	NMD3	ENST00000472947.1,ENST00000351193.2,ENST00000460469.1	chr3	160956517:160956614:160958833:160958951:160960295:160960441,	160958834	160958951	160958906	160958906	Nonsense_Mutation	C	T	p.R276X
COAD	TCGA-A6-6141-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43628301:43628489:43644293:43644427:43644712:43644904,	43644294	43644427	43644410	43644410	Nonsense_Mutation	G	T	p.E361X
COAD	TCGA-CM-6678-01	NOL6	ENST00000297990.4,ENST00000379471.2,ENST00000353159.2	chr9	33469496:33469665:33470009:33470189:33472001:33472118,	33470010	33470189	33470051	33470051	Nonsense_Mutation	G	A	p.R173X
COAD	TCGA-A6-6141-01	NONO	ENST00000276079.8,ENST00000535149.1,ENST00000373856.3,ENST00000373841.1,ENST00000471419.2	chrX	70511766:70511822:70514076:70514378:70516414:70516510,	70514077	70514378	70514185	70514185	Nonsense_Mutation	C	T	p.R64X
COAD	TCGA-G4-6303-01	NOP58	ENST00000433543.2	chr2	203155847:203155993:203157499:203157626:203160396:203160560,203155847:203155993:203157499:203157626:203162101:203162236,	203157500	203157626	203157515	203157515	Nonsense_Mutation	G	T	p.E266X
COAD	TCGA-CA-6718-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108043331	108043331	Nonsense_Mutation	C	A	p.E794X
COAD	TCGA-AD-6889-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115351952:115352060:115355381:115355486:115356844:115356943,	115355382	115355486	115355414	115355414	Nonsense_Mutation	G	A	p.R1502X
COAD	TCGA-AA-3510-01	NRCAM	ENST00000379028.3,ENST00000425651.2,ENST00000379022.4	chr7	107800805:107800937:107807365:107807518:107808721:107808847,	107807366	107807518	107807429	107807429	Nonsense_Mutation	G	A	p.R1135X
COAD	TCGA-G4-6322-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709523	176709523	Nonsense_Mutation	C	T	p.R1984X
COAD	TCGA-G4-6302-01	NSMCE4A	ENST00000369023.3,ENST00000369017.5,ENST00000538652.1,ENST00000468209.1,ENST00000489266.1	chr10	123722752:123722843:123724800:123724900:123727169:123727321,	123724801	123724900	123724860	123724860	Nonsense_Mutation	G	A	p.R232X
COAD	TCGA-G4-6320-01	NT5E	ENST00000369651.3	chr6	86200225:86200375:86201694:86201895:86203558:86205496,86199211:86199317:86201694:86201895:86203558:86205496,	86201695	86201895	86201721	86201721	Nonsense_Mutation	C	T	p.R463X
COAD	TCGA-DM-A1D9-01	NTRK3	ENST00000557856.1,ENST00000317501.3,ENST00000540489.2,ENST00000542733.2,ENST00000558676.1,ENST00000357724.2,ENST00000355254.2,ENST00000394480.2,ENST00000360948.2	chr15	88576087:88576276:88669501:88669604:88670392:88670422,	88669502	88669604	88669526	88669526	Nonsense_Mutation	G	A	p.R458X
COAD	TCGA-CM-4744-01	NUB1	ENST00000413040.2,ENST00000355851.4,ENST00000566856.1,ENST00000568733.1	chr7	151064946:151065054:151065820:151065973:151071182:151071287,	151065821	151065973	151065858	151065858	Nonsense_Mutation	C	A	p.S402X
COAD	TCGA-CA-6717-01	NUP107	ENST00000535718.1,ENST00000229179.4,ENST00000539906.1,ENST00000378905.2	chr12	69090630:69090702:69094505:69094633:69096515:69096564,	69094506	69094633	69094533	69094533	Nonsense_Mutation	C	T	p.R194X
COAD	TCGA-CA-6717-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2	chr5	37331786:37331897:37333564:37333735:37337919:37338020,	37333565	37333735	37333656	37333656	Nonsense_Mutation	A	C	p.L476X
COAD	TCGA-AD-6964-01	NUP43	ENST00000367404.4	chr6	150059901:150059914:150063525:150063706:150064773:150064851,150057606:150057758:150063525:150063706:150064773:150064851,150052748:150052871:150063525:150063706:150064773:150064851,	150063526	150063706	150063668	150063668	Nonsense_Mutation	G	T	p.Y120X
COAD	TCGA-AZ-4315-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28116299:28116404:28117008:28117068:28171272:28171400,	28117009	28117068	28117044	28117044	Nonsense_Mutation	C	A	p.E702X
COAD	TCGA-CK-5915-01	ODC1	ENST00000234111.4,ENST00000405333.1	chr2	10583827:10583962:10584220:10584393:10584599:10584673,	10584221	10584393	10584354	10584354	Nonsense_Mutation	C	A	p.E106X
COAD	TCGA-AZ-4315-01	OLA1	ENST00000344357.5,ENST00000284719.3,ENST00000392560.2,ENST00000409546.1	chr2	174940136:174940255:174943695:174943818:174945879:174945911,	174943696	174943818	174943722	174943722	Nonsense_Mutation	C	A	p.E197X
COAD	TCGA-DM-A1DA-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13165994:13166110:13167417:13167567:13167945:13168039,	13167418	13167567	13167515	13167515	Nonsense_Mutation	G	T	p.E366X
COAD	TCGA-AZ-4315-01	ORC3	ENST00000392844.3,ENST00000257789.4	chr6	88304259:88304331:88311501:88311599:88313101:88313246,88304070:88304125:88311501:88311599:88313101:88313246,	88311502	88311599	88311549	88311549	Nonsense_Mutation	C	T	p.R43X
COAD	TCGA-F4-6856-01	OSBPL1A	ENST00000319481.3,ENST00000399443.3,ENST00000357041.4	chr18	21758125:21758159:21759701:21759799:21761108:21761243,	21759702	21759799	21759758	21759758	Nonsense_Mutation	C	T	p.W105X
COAD	TCGA-G4-6628-01	OSGEPL1	ENST00000519810.1,ENST00000518114.1,ENST00000522700.1	chr2	190619898:190620286:190626145:190626386:190627410:190627493,	190626146	190626386	190626330	190626331	Nonsense_Mutation	-	A	p.K13_P14delinsX
COAD	TCGA-AA-3511-01	OSTM1	ENST00000193322.3,ENST00000440575.2	chr6	108366034:108366044:108370456:108370622:108372234:108372270,	108370457	108370622	108370486	108370486	Nonsense_Mutation	G	C	p.S307X
COAD	TCGA-CA-6718-01	PABPC1	ENST00000519100.1	chr8	101725369:101725409:101727698:101727829:101730000:101730116,	101727699	101727829	101727768	101727768	Nonsense_Mutation	C	A	p.E189X
COAD	TCGA-CA-6718-01	PABPC1	ENST00000318607.5,ENST00000523555.1,ENST00000517921.1,ENST00000519004.1,ENST00000522387.1	chr8	101725369:101725409:101727689:101727829:101730000:101730116,	101727690	101727829	101727768	101727768	Nonsense_Mutation	C	A	p.E189X
COAD	TCGA-G4-6586-01	PACRG	ENST00000366888.2,ENST00000366889.2,ENST00000541974.1	chr6	163483317:163483353:163510290:163510440:163735858:163736174,	163510291	163510440	163510305	163510305	Nonsense_Mutation	C	T	p.R160X
COAD	TCGA-A6-6140-01	PAM	ENST00000438793.3,ENST00000509636.1,ENST00000346918.2,ENST00000304400.7,ENST00000379787.4,ENST00000348126.2,ENST00000455264.2	chr5	102202976:102203097:102237059:102237117:102249637:102249725,	102237060	102237117	102237087	102237087	Nonsense_Mutation	C	T	p.R80X
COAD	TCGA-A6-6780-01	PAM	ENST00000438793.3,ENST00000348126.2	chr5	102355493:102355547:102360834:102361038:102363885:102363926,102355493:102355547:102360834:102361038:102364590:102364814,102355493:102355547:102360834:102361038:102363888:102363942,	102360835	102361038	102361017	102361017	Nonsense_Mutation	A	-	p.W889X
COAD	TCGA-A6-6780-01	PAM	ENST00000504456.1	chr5	102355493:102355547:102360837:102361038:102363888:102363942,102355493:102355547:102360837:102361038:102363885:102363926,	102360838	102361038	102361017	102361017	Nonsense_Mutation	A	-	p.W889X
COAD	TCGA-CA-6717-01	PAPOLA	ENST00000554130.1	chr14	96991646:96991728:96993766:96993876:96994289:96994339,96987399:96987409:96993766:96993876:96994289:96994339,	96993767	96993876	96993811	96993811	Nonsense_Mutation	C	T	p.R126X
COAD	TCGA-CA-6717-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525600	176525600	Nonsense_Mutation	G	T	p.E48X
COAD	TCGA-DM-A28K-01	PAX6	ENST00000419022.1,ENST00000455099.1,ENST00000423822.2,ENST00000379115.4,ENST00000379107.2,ENST00000379129.2	chr11	31823309:31823324:31824251:31824382:31827949:31828010,31823418:31823460:31824251:31824382:31827949:31828010,	31824252	31824382	31824263	31824263	Nonsense_Mutation	G	A	p.R44X
COAD	TCGA-AZ-6601-01	PAX8	ENST00000465084.1	chr2	113977668:113977755:113984675:113984833:113992970:113993020,	113984676	113984833	113984831	113984831	Nonsense_Mutation	G	A	p.R364X
COAD	TCGA-AZ-6601-01	PAX8	ENST00000497038.2,ENST00000348715.5,ENST00000263334.5,ENST00000429538.3	chr2	113977668:113977755:113984731:113984833:113994177:113994298,113977668:113977755:113984731:113984833:113999127:113999260,113977668:113977755:113984731:113984833:113992970:113993020,	113984732	113984833	113984831	113984831	Nonsense_Mutation	G	A	p.R364X
COAD	TCGA-CM-6674-01	PAXIP1	ENST00000473219.1,ENST00000404141.1,ENST00000475066.1,ENST00000397192.1,ENST00000457196.1	chr7	154760758:154760836:154767405:154768041:154774928:154775042,	154767406	154768041	154768017	154768017	Nonsense_Mutation	G	A	p.R155X
COAD	TCGA-A6-2671-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678790	52678790	Nonsense_Mutation	T	A	p.K277X
COAD	TCGA-CK-4950-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47822244:47822397:47831102:47831981:47832750:47832906,	47831103	47831981	47831133	47831133	Nonsense_Mutation	G	T	p.E1716X
COAD	TCGA-AZ-4315-01	PCTP	ENST00000573500.1,ENST00000576183.1	chr17	53828454:53828605:53844695:53844813:53848466:53848546,	53844696	53844813	53844702	53844702	Nonsense_Mutation	G	T	p.G50X
COAD	TCGA-AZ-5403-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000313382.9,ENST00000369359.4,ENST00000534367.1,ENST00000530062.1,ENST00000530130.1,ENST00000369356.4,ENST00000530740.1	chr1	144855855:144855883:144856815:144857042:144857611:144857728,	144856816	144857042	144856833	144856833	Nonsense_Mutation	C	A	p.E2112X
COAD	TCGA-AZ-4315-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000503412.1,ENST00000354960.3	chr4	120422324:120422408:120423735:120423810:120425690:120425754,	120423736	120423810	120423756	120423756	Nonsense_Mutation	C	A	p.E744X
COAD	TCGA-AA-3510-01	PDE8A	ENST00000310298.4,ENST00000394553.1,ENST00000557957.1	chr15	85626786:85626875:85634274:85634412:85641178:85641267,85632568:85632647:85634274:85634412:85641178:85641267,	85634275	85634412	85634393	85634393	Nonsense_Mutation	C	A	p.S206X
COAD	TCGA-F4-6808-01	PDIA3	ENST00000455250.1	chr15	44046021:44046100:44048846:44048964:44053621:44053729,44046021:44046100:44048846:44048964:44057647:44057764,	44048847	44048964	44048949	44048949	Nonsense_Mutation	G	T	p.G117X
COAD	TCGA-A6-6140-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33316728:33316865:33320114:33320238:33327469:33327674,	33320115	33320238	33320187	33320187	Nonsense_Mutation	C	A	p.Y895X
COAD	TCGA-A6-6141-01	PFDN4	ENST00000441080.2	chr20	52824633:52824663:52830889:52830997:52831838:52831979,	52830890	52830997	52830980	52830980	Nonsense_Mutation	G	T	p.E39X
COAD	TCGA-AD-6889-01	PFKP	ENST00000381075.2,ENST00000433193.1,ENST00000381125.4,ENST00000381072.1	chr10	3175426:3175506:3176674:3176774:3177927:3178030,	3176675	3176774	3176774	3176774	Nonsense_Mutation	G	T	p.G708X
COAD	TCGA-CM-5861-01	PFN4	ENST00000313213.4,ENST00000465360.1	chr2	24338266:24338481:24342446:24342552:24344032:24344170,	24342447	24342552	24342447	24342447	Nonsense_Mutation	C	A	p.G121X
COAD	TCGA-A6-6781-01	PGR	ENST00000534780.1,ENST00000528960.1	chr11	100912675:100912833:100920659:100920738:100922154:100922201,	100920660	100920738	100920699	100920699	Nonsense_Mutation	C	A	p.E653X
COAD	TCGA-A6-6781-01	PGR	ENST00000325455.5,ENST00000263463.5,ENST00000534013.1,ENST00000533207.1,ENST00000530764.1	chr11	100912675:100912833:100920659:100920790:100922154:100922201,	100920660	100920790	100920699	100920699	Nonsense_Mutation	C	A	p.E653X
COAD	TCGA-AA-3511-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022178	11022178	Nonsense_Mutation	A	T	p.K98X
COAD	TCGA-AZ-4315-01	PHF2	ENST00000359246.4	chr9	96422473:96422842:96425188:96425308:96425798:96425917,	96425189	96425308	96425264	96425264	Nonsense_Mutation	C	T	p.R592X
COAD	TCGA-G4-6304-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603771	111603771	Nonsense_Mutation	C	T	p.R283X
COAD	TCGA-CK-5916-01	PI4KA	ENST00000492581.1,ENST00000466394.1,ENST00000477245.1,ENST00000572273.1,ENST00000466772.1,ENST00000399213.2,ENST00000414196.3,ENST00000255882.6	chr22	21068745:21068816:21068915:21068988:21071995:21072066,	21068916	21068988	21068920	21068920	Nonsense_Mutation	G	A	p.Q548X
COAD	TCGA-D5-6540-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17124208:17124378:17126715:17126852:17131978:17132108,	17126716	17126852	17126787	17126787	Nonsense_Mutation	C	A	p.G1204X
COAD	TCGA-CK-5916-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17156657:17156706:17158028:17158172:17167214:17167278,	17158029	17158172	17158163	17158163	Nonsense_Mutation	G	A	p.R572X
COAD	TCGA-AZ-4315-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589618	67589618	Nonsense_Mutation	C	T	p.R461X
COAD	TCGA-D5-6922-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589634	67589634	Nonsense_Mutation	T	G	p.L466X
COAD	TCGA-AZ-4315-01	PITRM1	ENST00000451104.2,ENST00000380994.1,ENST00000224949.4,ENST00000380989.2,ENST00000455371.1,ENST00000464395.1	chr10	3181095:3181241:3182878:3183004:3185580:3185693,	3182879	3183004	3182952	3182952	Nonsense_Mutation	G	A	p.R802X
COAD	TCGA-CA-5796-01	PKD2	ENST00000508588.1,ENST00000502363.1,ENST00000512858.1,ENST00000511337.1,ENST00000237596.2	chr4	88986913:88987031:88989049:88989213:88995963:88996111,	88989050	88989213	88989098	88989098	Nonsense_Mutation	C	T	p.R803X
COAD	TCGA-A6-6141-01	PKD2L1	ENST00000318222.3,ENST00000353274.3,ENST00000528248.1,ENST00000338519.3	chr10	102049771:102049895:102050157:102050276:102051057:102051184,	102050158	102050276	102050168	102050168	Nonsense_Mutation	C	A	p.E659X
COAD	TCGA-A6-6780-01	PLA2G4E	ENST00000547930.1,ENST00000399518.3,ENST00000413860.2	chr15	42276633:42276817:42278036:42278203:42279369:42279573,	42278037	42278203	42278090	42278090	Nonsense_Mutation	G	A	p.R717X
COAD	TCGA-AA-3510-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673383	75673383	Nonsense_Mutation	G	T	p.E183X
COAD	TCGA-CA-6718-01	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438095	9438095	Nonsense_Mutation	G	T	p.E999X
COAD	TCGA-AA-3510-01	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000435379.1,ENST00000538330.1,ENST00000539875.1,ENST00000543219.1,ENST00000318197.6	chr12	18837063:18837213:18841022:18841152:18847843:18847978,	18841023	18841152	18841083	18841083	Nonsense_Mutation	C	A	p.E511X
COAD	TCGA-AZ-4315-01	PLEKHA4	ENST00000263265.6,ENST00000594100.1,ENST00000596982.1,ENST00000355496.5	chr19	49362353:49362396:49362725:49362941:49363606:49363716,	49362726	49362941	49362823	49362823	Nonsense_Mutation	G	A	p.R199X
COAD	TCGA-AZ-4615-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410381	19410381	Nonsense_Mutation	A	-	p.S149X
COAD	TCGA-CA-6717-01	PNPLA8	ENST00000257694.8,ENST00000422087.1,ENST00000388728.5,ENST00000453085.1,ENST00000453144.1,ENST00000436062.1,ENST00000426128.2	chr7	108131853:108131911:108137027:108137199:108137926:108138021,	108137028	108137199	108137134	108137134	Nonsense_Mutation	G	A	p.R407X
COAD	TCGA-G4-6628-01	POLK	ENST00000514296.1	chr5	74807715:74807739:74842834:74842982:74848296:74848416,74830652:74830789:74842834:74842982:74848296:74848416,	74842835	74842982	74842935	74842935	Nonsense_Mutation	G	T	p.G30X
COAD	TCGA-AZ-4315-01	POLR2B	ENST00000441246.2,ENST00000478188.1,ENST00000381227.1,ENST00000314595.5,ENST00000431623.2	chr4	57887064:57887161:57888317:57888412:57889495:57889746,	57888318	57888412	57888376	57888376	Nonsense_Mutation	G	T	p.E827X
COAD	TCGA-G4-6294-01	POLR2G	ENST00000531944.1	chr11	62529088:62529132:62529266:62530338:62532653:62532704,	62529267	62530338	62529276	62529276	Nonsense_Mutation	G	T	p.E8X
COAD	TCGA-G4-6294-01	POLR2G	ENST00000524819.1	chr11	62529088:62529132:62529266:62529656:62530338:62530498,	62529267	62529656	62529276	62529276	Nonsense_Mutation	G	T	p.E8X
COAD	TCGA-CM-6162-01	PON1	ENST00000433729.1	chr7	94946045:94946101:94947634:94947705:94953713:94953788,	94947635	94947705	94947701	94947701	Nonsense_Mutation	G	A	p.R27X
COAD	TCGA-CA-6717-01	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379456	39379456	Nonsense_Mutation	C	T	p.Q243X
COAD	TCGA-AA-3510-01	PPHLN1	ENST00000395568.2,ENST00000549190.1,ENST00000395580.3,ENST00000256678.8,ENST00000552761.1,ENST00000317560.9,ENST00000337898.6,ENST00000358314.7,ENST00000432191.2,ENST00000449194.2	chr12	42787371:42787491:42792655:42792796:42835116:42835231,	42792656	42792796	42792725	42792725	Nonsense_Mutation	G	T	p.E232X
COAD	TCGA-A6-6141-01	PPID	ENST00000307720.3,ENST00000512699.1	chr4	159631779:159631822:159631913:159632000:159634270:159634412,	159631914	159632000	159631931	159631931	Nonsense_Mutation	C	A	p.E322X
COAD	TCGA-AZ-6599-01	PPP1R18	ENST00000399199.3,ENST00000488324.1,ENST00000274853.3	chr6	30644165:30645065:30646955:30647166:30652184:30652321,	30646956	30647166	30646989	30646989	Nonsense_Mutation	G	A	p.Q597X
COAD	TCGA-AA-3492-01	PPP1R36	ENST00000557202.1,ENST00000298705.1,ENST00000467261.1	chr14	65031468:65031555:65032074:65032172:65032343:65032410,	65032075	65032172	65032133	65032133	Nonsense_Mutation	C	T	p.R110X
COAD	TCGA-AA-3510-01	PPP2R2A	ENST00000521557.1,ENST00000523925.1,ENST00000521095.1,ENST00000519439.1,ENST00000524099.1,ENST00000315985.7,ENST00000518397.1,ENST00000380737.3,ENST00000522535.1	chr8	26151184:26151256:26196405:26196503:26211983:26212066,	26196406	26196503	26196444	26196444	Nonsense_Mutation	G	T	p.E51X
COAD	TCGA-A6-6141-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9570154:9570681:9577061:9577189:9583114:9583273,	9577062	9577189	9577075	9577075	Nonsense_Mutation	C	A	p.E345X
COAD	TCGA-DM-A0XF-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9577061:9577189:9583114:9583273:9584512:9584578,	9583115	9583273	9583190	9583190	Nonsense_Mutation	A	T	p.C281X
COAD	TCGA-CA-6717-01	PPP6R3	ENST00000265637.4	chr11	68287102:68287119:68305126:68305359:68312305:68312492,68228280:68228295:68305126:68305359:68312305:68312492,	68305127	68305359	68305184	68305184	Nonsense_Mutation	G	T	p.E18X
COAD	TCGA-A6-5665-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000265636.5,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68321612:68321725:68326033:68326147:68331770:68331875,	68326034	68326147	68326038	68326038	Nonsense_Mutation	G	T	p.E246X
COAD	TCGA-CA-6717-01	PRKAB2	ENST00000254101.3	chr1	146638424:146638518:146639345:146639512:146643567:146643746,	146639346	146639512	146639482	146639482	Nonsense_Mutation	G	A	p.Q63X
COAD	TCGA-CM-5861-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1,ENST00000417852.1	chr7	716865:716957:720192:720363:750965:751164,	720193	720363	720252	720252	Nonsense_Mutation	G	A	p.R97X
COAD	TCGA-A6-6141-01	PRSS36	ENST00000418068.2,ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151999:31152078:31152789:31152931:31153043:31153281,	31152790	31152931	31152854	31152854	Nonsense_Mutation	G	A	p.R613X
COAD	TCGA-CM-6162-01	PSG8	ENST00000306511.4	chr19	43262153:43262432:43268067:43268433:43269669:43269814,	43268068	43268433	43268101	43268101	Nonsense_Mutation	C	A	p.G133X
COAD	TCGA-A6-5661-01	PSMB8	ENST00000395339.3,ENST00000374881.2,ENST00000374882.3,ENST00000484003.1	chr6	32809307:32809512:32809910:32810040:32810448:32810488,	32809911	32810040	32810027	32810027	Nonsense_Mutation	G	A	p.R137X
COAD	TCGA-AA-3510-01	PSMC6	ENST00000555887.1,ENST00000554956.1,ENST00000556813.1,ENST00000554044.1,ENST00000554952.1,ENST00000606149.1,ENST00000557240.1	chr14	53173939:53174022:53175026:53175106:53175200:53175240,	53175027	53175106	53175044	53175044	Nonsense_Mutation	G	T	p.E49X
COAD	TCGA-CA-6717-01	PSPC1	ENST00000492741.1,ENST00000338910.4,ENST00000471658.1	chr13	20304378:20304484:20315704:20315789:20325410:20325607,	20315705	20315789	20315769	20315769	Nonsense_Mutation	C	A	p.E330X
COAD	TCGA-AZ-6601-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000521059.1,ENST00000340930.3,ENST00000395218.2,ENST00000519465.1,ENST00000430260.2,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141685558:141685598:141696730:141696793:141710989:141711121,	141696731	141696793	141696772	141696772	Nonsense_Mutation	G	A	p.R841X
COAD	TCGA-AZ-4615-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860646	96860646	Nonsense_Mutation	C	T	p.R598X
COAD	TCGA-G4-6586-01	PTPN12	ENST00000418110.1,ENST00000248594.6,ENST00000447995.2,ENST00000433369.2,ENST00000415482.2	chr7	77212871:77212967:77214859:77214898:77227158:77227218,77212871:77212967:77214859:77214898:77221501:77221573,	77214860	77214898	77214878	77214878	Nonsense_Mutation	C	T	p.R4X
COAD	TCGA-CA-6717-01	PTPN22	ENST00000538253.1,ENST00000532224.1,ENST00000420377.2,ENST00000359785.5,ENST00000484147.1,ENST00000528414.1,ENST00000525799.1	chr1	114377014:114377061:114377531:114377615:114380211:114381029,	114377532	114377615	114377567	114377567	Nonsense_Mutation	C	T	p.W565X
COAD	TCGA-AZ-4315-01	PTPRA	ENST00000425918.2,ENST00000399903.2,ENST00000358719.4,ENST00000356147.3,ENST00000380393.3,ENST00000318266.5,ENST00000216877.6	chr20	2968983:2969120:2985701:2985792:2987989:2988066,	2985702	2985792	2985771	2985771	Nonsense_Mutation	C	T	p.R261X
COAD	TCGA-AA-3510-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5	chr12	70974815:70975082:70980786:70981047:70983743:70984013,	70980787	70981047	70981006	70981006	Nonsense_Mutation	C	A	p.E390X
COAD	TCGA-G4-6588-01	PTPRF	ENST00000372413.3,ENST00000372414.3,ENST00000438120.1,ENST00000359947.4	chr1	44054401:44054671:44056642:44057224:44057482:44057619,	44056643	44057224	44057079	44057079	Nonsense_Mutation	G	A	p.W462X
COAD	TCGA-CA-6717-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	7955118:7955412:8069683:8069992:8076452:8076562,	8069684	8069992	8069839	8069839	Nonsense_Mutation	C	T	p.R430X
COAD	TCGA-CA-6718-01	PUS10	ENST00000316752.6,ENST00000407787.1,ENST00000602599.1	chr2	61233691:61233778:61235895:61236150:61238899:61239040,	61235896	61236150	61236054	61236054	Nonsense_Mutation	C	A	p.E75X
COAD	TCGA-CA-6718-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105099614:105099706:105103067:105103197:105105759:105105861,	105103068	105103197	105103129	105103129	Nonsense_Mutation	G	A	p.R566X
COAD	TCGA-A6-5661-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148391	44148392	Nonsense_Mutation	-	A	p.K220_Y221delinsX
COAD	TCGA-G4-6628-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652526	1652526	Nonsense_Mutation	C	T	p.W1009X
COAD	TCGA-CM-6162-01	QARS	ENST00000470113.1,ENST00000459870.1	chr3	49133426:49133512:49135424:49135913:49136032:49136125,	49135425	49135913	49135790	49135790	Nonsense_Mutation	G	A	p.R694X
COAD	TCGA-AZ-4315-01	QKI	ENST00000453779.2,ENST00000392127.2,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163876310:163876453:163899811:163899834,	163876311	163876453	163876442	163876442	Nonsense_Mutation	G	T	p.E92X
COAD	TCGA-CM-6171-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74289832	74289832	Nonsense_Mutation	G	A	p.R160X
COAD	TCGA-CA-6717-01	QSER1	ENST00000527788.1,ENST00000399302.2,ENST00000524678.1	chr11	32990591:32990689:32994942:32995095:32996793:32996889,	32994943	32995095	32994982	32994982	Nonsense_Mutation	C	T	p.R1620X
COAD	TCGA-AZ-6601-01	RAB3GAP2	ENST00000484658.1,ENST00000474178.1,ENST00000358951.2	chr1	220379248:220379348:220383729:220383831:220384142:220384218,	220383730	220383831	220383753	220383753	Nonsense_Mutation	G	A	p.R197X
COAD	TCGA-AZ-6601-01	RAB6B	ENST00000460865.3,ENST00000486858.1,ENST00000285208.4,ENST00000543906.1,ENST00000477759.1	chr3	133558349:133558461:133560128:133560234:133560453:133560507,	133560129	133560234	133560231	133560231	Nonsense_Mutation	G	A	p.R63X
COAD	TCGA-AA-3510-01	RACGAP1	ENST00000547905.1,ENST00000454520.2,ENST00000549342.1,ENST00000551016.1,ENST00000434422.1,ENST00000312377.5,ENST00000427314.2	chr12	50386332:50386438:50387913:50388112:50388196:50388292,	50387914	50388112	50387974	50387974	Nonsense_Mutation	G	A	p.R427X
COAD	TCGA-AA-3510-01	RAD1	ENST00000325577.4	chr5	34909362:34909461:34911658:34911917:34913574:34913683,34909362:34909461:34911658:34911917:34914799:34914906,	34911659	34911917	34911900	34911900	Nonsense_Mutation	G	A	p.R109X
COAD	TCGA-AA-3510-01	RAD52	ENST00000488642.2,ENST00000535376.1	chr12	1023059:1023287:1023576:1023698:1025509:1025649,	1023577	1023698	1023606	1023606	Nonsense_Mutation	C	A	p.E320X
COAD	TCGA-AA-3510-01	RAD52	ENST00000228345.5,ENST00000468231.1,ENST00000430095.2,ENST00000358495.3,ENST00000461568.1,ENST00000543912.1,ENST00000481052.1,ENST00000463750.1,ENST00000539046.1	chr12	1023059:1023287:1023596:1023698:1025509:1025649,	1023597	1023698	1023606	1023606	Nonsense_Mutation	C	A	p.E320X
COAD	TCGA-AA-3510-01	RALBP1	ENST00000019317.4,ENST00000383432.3	chr18	9516842:9517301:9522157:9522507:9524591:9524753,	9522158	9522507	9522379	9522379	Nonsense_Mutation	G	T	p.E309X
COAD	TCGA-A6-6650-01	RAN	ENST00000541630.1,ENST00000543796.1,ENST00000477395.1,ENST00000392369.2,ENST00000448750.3,ENST00000535090.1,ENST00000254675.3	chr12	131357547:131357673:131359090:131359278:131360156:131360184,	131359091	131359278	131359261	131359261	Nonsense_Mutation	C	T	p.R140X
COAD	TCGA-A6-6650-01	RAN	ENST00000536606.1	chr12	131357547:131357673:131359095:131359278:131360156:131360184,	131359096	131359278	131359261	131359261	Nonsense_Mutation	C	T	p.R140X
COAD	TCGA-G4-6588-01	RARB	ENST00000480001.1	chr3	25622036:25622213:25636010:25636169:25637910:25637946,	25636011	25636169	25636097	25636097	Nonsense_Mutation	C	T	p.R360X
COAD	TCGA-AD-6965-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47044453:47044603:47044700:47044766:47044840:47045029,	47044701	47044766	47044719	47044719	Nonsense_Mutation	C	T	p.Q630X
COAD	TCGA-AZ-4315-01	RBM18	ENST00000417201.3	chr9	125009796:125009883:125014125:125014252:125023658:125023787,	125014126	125014252	125014161	125014161	Nonsense_Mutation	G	A	p.R69X
COAD	TCGA-D5-6930-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262X
COAD	TCGA-D5-6930-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262X
COAD	TCGA-CA-6717-01	RBMS3	ENST00000383766.2	chr3	29323106:29323247:29476236:29476406:29529931:29529990,	29476237	29476406	29476354	29476354	Nonsense_Mutation	C	T	p.R66X
COAD	TCGA-CA-6717-01	RBMS3	ENST00000445033.1,ENST00000396583.3,ENST00000383767.2,ENST00000456853.1,ENST00000273139.9,ENST00000452462.1	chr3	29323106:29323247:29476233:29476406:29529931:29529990,	29476234	29476406	29476354	29476354	Nonsense_Mutation	C	T	p.R66X
COAD	TCGA-AZ-4315-01	RBP7	ENST00000294435.7	chr1	10057273:10057389:10067627:10067806:10068230:10068332,	10067628	10067806	10067762	10067762	Nonsense_Mutation	G	T	p.E70X
COAD	TCGA-G4-6588-01	RBPJL	ENST00000343694.3,ENST00000372741.3,ENST00000372743.1	chr20	43940860:43941035:43942107:43942245:43942674:43942784,	43942108	43942245	43942215	43942215	Nonsense_Mutation	C	T	p.R243X
COAD	TCGA-AA-3713-01	RBPMS	ENST00000517860.1,ENST00000397323.4,ENST00000523115.1,ENST00000287771.5,ENST00000520191.1,ENST00000520161.1,ENST00000523717.1,ENST00000339877.4,ENST00000320203.4,ENST00000519647.1,ENST00000522694.1	chr8	30336845:30336893:30361802:30361953:30402010:30402073,	30361803	30361953	30361947	30361947	Nonsense_Mutation	G	T	p.E131X
COAD	TCGA-AZ-6601-01	RDH13	ENST00000592573.1,ENST00000415061.3,ENST00000291892.6,ENST00000396247.3	chr19	55560026:55560131:55568020:55568176:55570524:55570542,	55568021	55568176	55568048	55568048	Nonsense_Mutation	G	A	p.R34X
COAD	TCGA-AD-6895-01	RECQL4	ENST00000532237.1,ENST00000532269.1,ENST00000428558.2,ENST00000534626.2	chr8	145738799:145738864:145738954:145739096:145739311:145739491,	145738955	145739096	145738994	145738994	Nonsense_Mutation	G	A	p.R721X
COAD	TCGA-AZ-6601-01	RFC1	ENST00000381897.1,ENST00000418436.1,ENST00000349703.2	chr4	39322084:39322289:39322906:39322994:39324959:39325037,	39322907	39322994	39322991	39322991	Nonsense_Mutation	G	A	p.R242X
COAD	TCGA-CA-6718-01	RFC5	ENST00000543153.1,ENST00000392542.2,ENST00000229043.3,ENST00000454402.2	chr12	118465766:118465835:118467575:118467630:118468986:118469241,	118467576	118467630	118467596	118467596	Nonsense_Mutation	C	T	p.R213X
COAD	TCGA-G4-6586-01	RGS10	ENST00000369101.3,ENST00000369103.2,ENST00000392865.1	chr10	121275054:121275164:121285543:121285630:121286817:121286936,	121285544	121285630	121285567	121285568	Nonsense_Mutation	-	A	p.K78_K79delinsX
COAD	TCGA-AA-3510-01	RGS10	ENST00000369101.3,ENST00000369103.2,ENST00000392865.1	chr10	121275054:121275164:121285543:121285630:121286817:121286936,	121285544	121285630	121285603	121285603	Nonsense_Mutation	C	A	p.E66X
COAD	TCGA-AZ-4315-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	101020724:101020797:101051158:101051260:101052189:101052315,	101051159	101051260	101051197	101051197	Nonsense_Mutation	C	A	p.E710X
COAD	TCGA-AZ-6598-01	RMND5A	ENST00000283632.4	chr2	86980580:86980681:86992149:86992316:86992981:86993147,	86992150	86992316	86992259	86992259	Nonsense_Mutation	C	T	p.R211X
COAD	TCGA-AD-6889-01	RNF149	ENST00000295317.3,ENST00000424632.1	chr2	101898320:101898519:101902542:101902639:101905434:101905517,	101902543	101902639	101902593	101902593	Nonsense_Mutation	G	A	p.R304X
COAD	TCGA-AA-3510-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63509763	63509763	Nonsense_Mutation	G	T	p.E204X
COAD	TCGA-F4-6570-01	RNF212	ENST00000511620.1,ENST00000510715.1	chr4	1067386:1067450:1079683:1079742:1084569:1084626,	1079684	1079742	1079711	1079711	Nonsense_Mutation	G	T	p.S112X
COAD	TCGA-CA-5796-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492891	56492891	Nonsense_Mutation	C	-	p.L17X
COAD	TCGA-CA-6718-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78647960:78648077:78649262:78649459:78655882:78656191,	78649263	78649459	78649271	78649271	Nonsense_Mutation	C	A	p.E1645X
COAD	TCGA-F4-6570-01	ROCK1	ENST00000399799.2	chr18	18533538:18533746:18534743:18535005:18535127:18535206,	18534744	18535005	18534813	18534813	Nonsense_Mutation	G	A	p.R1262X
COAD	TCGA-CA-6717-01	ROS1	ENST00000368507.3,ENST00000368508.3	chr6	117609462:117609965:117622136:117622300:117629956:117630091,	117622137	117622300	117622269	117622269	Nonsense_Mutation	C	A	p.E2201X
COAD	TCGA-A6-5661-01	RPAP1	ENST00000562303.1,ENST00000304330.4	chr15	41812588:41813345:41813935:41814078:41814295:41814448,	41813936	41814078	41813997	41813997	Nonsense_Mutation	C	A	p.G993X
COAD	TCGA-AZ-4315-01	RPAP2	ENST00000477322.1,ENST00000610020.1	chr1	92801903:92801984:92811402:92811471:92846280:92846430,	92811403	92811471	92811447	92811447	Nonsense_Mutation	T	G	p.L555X
COAD	TCGA-AD-6889-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53675196:53675387:53679536:53679915:53682875:53683027,	53679537	53679915	53679759	53679760	Nonsense_Mutation	-	A	p.D821_F822delinsX
COAD	TCGA-AZ-4315-01	RRP7A	ENST00000323013.6	chr22	42905973:42909001:42910111:42910310:42910687:42910785,	42910112	42910310	42910160	42910160	Nonsense_Mutation	C	A	p.E237X
COAD	TCGA-AD-5900-01	RSF1	ENST00000308488.6,ENST00000480887.1,ENST00000360355.2	chr11	77377274:77378536:77383086:77383275:77386080:77386301,	77383087	77383275	77383147	77383147	Nonsense_Mutation	G	A	p.R1231X
COAD	TCGA-CA-6717-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022544	64022544	Nonsense_Mutation	G	A	p.R33X
COAD	TCGA-AA-3510-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55254493	55254493	Nonsense_Mutation	C	A	p.E248X
COAD	TCGA-G4-6309-01	RUFY1	ENST00000377001.2,ENST00000502984.1,ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1,ENST00000393448.2	chr5	178989631:178989665:178994461:178994563:178996302:178996383,	178994462	178994563	178994481	178994481	Nonsense_Mutation	C	T	p.R208X
COAD	TCGA-AZ-4315-01	RUFY1	ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1	chr5	179012796:179012866:179016546:179016648:179018625:179018742,	179016547	179016648	179016622	179016622	Nonsense_Mutation	C	T	p.R368X
COAD	TCGA-G4-6302-01	SAFB2	ENST00000591120.1	chr19	5613475:5613538:5616138:5616346:5621319:5621407,	5616139	5616346	5616316	5616316	Nonsense_Mutation	G	A	p.Q124X
COAD	TCGA-AA-3663-01	SAMD4A	ENST00000251091.5,ENST00000392067.3,ENST00000555192.1,ENST00000357634.3,ENST00000554335.1	chr14	55231172:55231258:55236821:55236940:55241651:55241853,	55236822	55236940	55236867	55236867	Nonsense_Mutation	C	T	p.Q548X
COAD	TCGA-CA-6717-01	SAMD4A	ENST00000251091.5,ENST00000392067.3,ENST00000555192.1,ENST00000357634.3,ENST00000554335.1	chr14	55231172:55231258:55236821:55236940:55241651:55241853,	55236822	55236940	55236927	55236927	Nonsense_Mutation	C	T	p.R568X
COAD	TCGA-CK-5916-01	SAP130	ENST00000259235.3,ENST00000357702.5	chr2	128744358:128744536:128747137:128747440:128750760:128750882,	128747138	128747440	128747330	128747330	Nonsense_Mutation	G	A	p.R556X
COAD	TCGA-DM-A1HA-01	SCAF8	ENST00000367178.3,ENST00000464628.1,ENST00000367186.4,ENST00000417268.1,ENST00000461219.1	chr6	155099134:155099179:155108994:155109156:155113956:155113992,	155108995	155109156	155109055	155109055	Nonsense_Mutation	C	T	p.R74X
COAD	TCGA-F4-6570-01	SCARA5	ENST00000524352.1,ENST00000301906.4,ENST00000354914.3,ENST00000518030.1	chr8	27764664:27764763:27767179:27767260:27779087:27779762,	27767180	27767260	27767183	27767183	Nonsense_Mutation	G	A	p.R332X
COAD	TCGA-CK-5916-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000531429.1,ENST00000520467.1	chr11	9081954:9082071:9087437:9087527:9088243:9088297,	9087438	9087527	9087525	9087525	Nonsense_Mutation	G	A	p.R255X
COAD	TCGA-AZ-4315-01	SCYL2	ENST00000360820.2,ENST00000549687.1	chr12	100676909:100676925:100685280:100685438:100691808:100691953,	100685281	100685438	100685392	100685392	Nonsense_Mutation	C	T	p.R97X
COAD	TCGA-AZ-4315-01	SDAD1	ENST00000395711.4,ENST00000395710.1,ENST00000356260.5	chr4	76878999:76879094:76881218:76881345:76882180:76882257,	76881219	76881345	76881297	76881297	Nonsense_Mutation	C	A	p.E469X
COAD	TCGA-CM-5861-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30887820:30887960:30888035:30888142:30888460:30888544,	30888036	30888142	30888131	30888131	Nonsense_Mutation	G	A	p.Q226X
COAD	TCGA-AM-5820-01	SELE	ENST00000333360.7	chr1	169696879:169697068:169697198:169697387:169698326:169698515,	169697199	169697387	169697355	169697355	Nonsense_Mutation	G	A	p.R375X
COAD	TCGA-G4-6586-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368912.3,ENST00000368913.3	chr1	151112451:151112566:151114979:151115151:151116860:151116884,	151114980	151115151	151115031	151115031	Nonsense_Mutation	G	A	p.Q23X
COAD	TCGA-AZ-6601-01	SENP7	ENST00000348610.3,ENST00000394095.2	chr3	101090851:101090970:101136436:101136634:101177798:101177896,101117704:101117899:101136436:101136634:101177798:101177896,	101136437	101136634	101136588	101136588	Nonsense_Mutation	G	A	p.R111X
COAD	TCGA-AZ-6598-01	SEPT5	ENST00000438754.2,ENST00000406395.1	chr22	19709162:19709259:19709355:19709480:19709759:19709854,	19709356	19709480	19709430	19709430	Nonsense_Mutation	C	T	p.R306X
COAD	TCGA-AZ-6598-01	SEPT5	ENST00000412544.1,ENST00000455843.1,ENST00000455784.2,ENST00000383045.3,ENST00000431044.1	chr22	19709162:19709259:19709344:19709480:19709759:19709854,	19709345	19709480	19709430	19709430	Nonsense_Mutation	C	T	p.R306X
COAD	TCGA-CA-6717-01	SERPINB3	ENST00000332821.8,ENST00000283752.5	chr18	61324503:61324646:61325746:61325864:61326632:61326761,	61325747	61325864	61325786	61325786	Nonsense_Mutation	G	A	p.R144X
COAD	TCGA-CA-6717-01	SESN1	ENST00000302071.2,ENST00000356644.7,ENST00000436639.2	chr6	109315664:109315812:109319715:109319958:109321693:109321876,	109319716	109319958	109319841	109319841	Nonsense_Mutation	C	A	p.E283X
COAD	TCGA-AZ-6598-01	SESTD1	ENST00000452991.1	chr2	180047806:180047915:180056513:180056593:180129225:180129352,	180056514	180056593	180056530	180056530	Nonsense_Mutation	T	-	p.L14X
COAD	TCGA-A6-5665-01	SETD2	ENST00000409792.3,ENST00000330022.7	chr3	47103652:47103836:47108559:47108608:47125209:47125436,	47108560	47108608	47108599	47108599	Nonsense_Mutation	G	A	p.R2024X
COAD	TCGA-DM-A1DA-01	SETD3	ENST00000331768.5,ENST00000446066.1	chr14	99866435:99866596:99870561:99870647:99871541:99871708,	99870562	99870647	99870619	99870619	Nonsense_Mutation	C	A	p.E374X
COAD	TCGA-CA-6717-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135204302	135204302	Nonsense_Mutation	C	A	p.E895X
COAD	TCGA-AY-6197-01	SGCZ	ENST00000382080.1	chr8	14095100:14095188:14181611:14181713:14412240:14412435,	14181612	14181713	14181674	14181674	Nonsense_Mutation	G	A	p.R92X
COAD	TCGA-A6-6141-01	SH2D2A	ENST00000368198.3,ENST00000368199.3,ENST00000392306.2	chr1	156776966:156777137:156778994:156779282:156779452:156779599,	156778995	156779282	156779201	156779201	Nonsense_Mutation	G	A	p.R238X
COAD	TCGA-AA-3492-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951091	235951091	Nonsense_Mutation	C	T	p.R560X
COAD	TCGA-AA-3510-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152053482:152053535:152054185:152054388:152056225:152056284,	152054186	152054388	152054264	152054264	Nonsense_Mutation	G	A	p.R614X
COAD	TCGA-AA-3510-01	SH3GLB1	ENST00000482504.1,ENST00000370558.4	chr1	87181406:87181548:87185189:87185318:87188222:87188356,	87185190	87185318	87185204	87185204	Nonsense_Mutation	G	T	p.E77X
COAD	TCGA-AZ-6601-01	SHMT1	ENST00000539052.1,ENST00000580002.1	chr17	18251638:18251754:18256985:18257131:18259199:18259310,18250827:18250970:18256985:18257131:18259199:18259310,	18256986	18257131	18257053	18257053	Nonsense_Mutation	G	A	p.R59X
COAD	TCGA-CA-6717-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724138	112724138	Nonsense_Mutation	G	T	p.E8X
COAD	TCGA-AZ-4315-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724477	112724477	Nonsense_Mutation	G	T	p.E121X
COAD	TCGA-AZ-4315-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112760172:112760303:112764363:112764552,112745385:112745523:112760172:112760303:112764363:112764552,	112760173	112760303	112760262	112760262	Nonsense_Mutation	G	T	p.E311X
COAD	TCGA-F4-6856-01	SIGIRR	ENST00000332725.3,ENST00000527987.1,ENST00000397632.3,ENST00000431843.2	chr11	405727:406059:406348:406538:407061:407135,405727:406059:406348:406538:406842:406993,	406349	406538	406484	406484	Nonsense_Mutation	G	A	p.Q312X
COAD	TCGA-CA-6717-01	SIGLEC10	ENST00000339313.5,ENST00000353836.5,ENST00000356298.5,ENST00000525998.1,ENST00000432469.2	chr19	51919919:51920204:51920335:51920719:51920798:51920965,	51920336	51920719	51920687	51920687	Nonsense_Mutation	G	A	p.R24X
COAD	TCGA-D5-6930-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117175	72117175	Nonsense_Mutation	C	T	p.R648X
COAD	TCGA-D5-6930-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117175	72117175	Nonsense_Mutation	C	T	p.R648X
COAD	TCGA-CM-5861-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117190	72117190	Nonsense_Mutation	G	T	p.G653X
COAD	TCGA-CM-5861-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117190	72117190	Nonsense_Mutation	G	T	p.G653X
COAD	TCGA-F4-6703-01	SIPA1L2	ENST00000262861.4,ENST00000308942.4,ENST00000366630.1	chr1	232579347:232579431:232581274:232581532:232596632:232596907,	232581275	232581532	232581315	232581315	Nonsense_Mutation	G	A	p.R1105X
COAD	TCGA-A6-6781-01	SKAP1	ENST00000584924.1,ENST00000581400.2,ENST00000336915.6	chr17	46239830:46239928:46247970:46248021:46257415:46257610,46239830:46239931:46247970:46248021:46257415:46257610,	46247971	46248021	46247980	46247980	Nonsense_Mutation	G	A	p.R290X
COAD	TCGA-F4-6809-01	SLAMF7	ENST00000359331.4	chr1	160719827:160719883:160720093:160720213:160721134:160721238,160719827:160719883:160720093:160720213:160721975:160722036,	160720094	160720213	160720187	160720187	Nonsense_Mutation	G	A	p.W248X
COAD	TCGA-CA-6717-01	SLC12A1	ENST00000396577.3	chr15	48513117:48513193:48519275:48519371:48521385:48521525,	48519276	48519371	48519368	48519368	Nonsense_Mutation	G	T	p.G241X
COAD	TCGA-AA-3510-01	SLC12A2	ENST00000343225.4	chr5	127507358:127507438:127510232:127510358:127512796:127512844,127507358:127507438:127510232:127510358:127514258:127514381,	127510233	127510358	127510235	127510235	Nonsense_Mutation	G	T	p.E936X
COAD	TCGA-A6-6137-01	SLC15A1	ENST00000376503.5	chr13	99336054:99337169:99338443:99338551:99339834:99339978,	99338444	99338551	99338446	99338446	Nonsense_Mutation	G	A	p.Q645X
COAD	TCGA-CA-6717-01	SLC22A17	ENST00000397267.1,ENST00000206544.8,ENST00000397260.3,ENST00000354772.3	chr14	23817099:23817205:23817369:23817515:23817714:23817755,	23817370	23817515	23817424	23817424	Nonsense_Mutation	G	A	p.R262X
COAD	TCGA-AD-6888-01	SLC23A2	ENST00000468355.1,ENST00000338244.1,ENST00000379333.1,ENST00000424750.2	chr20	4880200:4880358:4883087:4883204:4893525:4893624,	4883088	4883204	4883156	4883156	Nonsense_Mutation	G	A	p.R86X
COAD	TCGA-AA-3510-01	SLC23A3	ENST00000430764.1	chr2	220033750:220033824:220034279:220034400:220034544:220034709,	220034280	220034400	220034285	220034285	Nonsense_Mutation	G	T	p.S93X
COAD	TCGA-CA-6717-01	SLC25A26	ENST00000536651.1,ENST00000336733.6,ENST00000464350.2	chr3	66286967:66287124:66293626:66293736:66312474:66312579,66271489:66271553:66293626:66293736:66312474:66312579,	66293627	66293736	66293731	66293731	Nonsense_Mutation	G	T	p.E99X
COAD	TCGA-DM-A1DA-01	SLC25A30	ENST00000539591.1,ENST00000519547.1	chr13	45980017:45980112:45983061:45983209:45985496:45985615,45980017:45980112:45983061:45983209:45992434:45992509,	45983062	45983209	45983191	45983191	Nonsense_Mutation	A	T	p.L28X
COAD	TCGA-A6-6141-01	SLC25A3	ENST00000228318.3,ENST00000551917.1,ENST00000401722.3,ENST00000552981.1,ENST00000188376.5,ENST00000549338.1,ENST00000546766.1,ENST00000551123.1,ENST00000548480.1	chr12	98993732:98993905:98994948:98995059:98995145:98995162,	98994949	98995059	98995011	98995011	Nonsense_Mutation	G	T	p.E293X
COAD	TCGA-CA-6717-01	SLC25A40	ENST00000429674.1,ENST00000341119.5	chr7	87476263:87476437:87477167:87477292:87479195:87479263,	87477168	87477292	87477213	87477213	Nonsense_Mutation	C	A	p.E138X
COAD	TCGA-AM-5821-01	SLC26A10	ENST00000320442.4	chr12	58017618:58017696:58017785:58017881:58018282:58018389,58017618:58017696:58017785:58017881:58018648:58018765,	58017786	58017881	58017860	58017860	Nonsense_Mutation	G	A	p.W402X
COAD	TCGA-AZ-4315-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000309536.2,ENST00000520818.1	chr8	92346522:92346675:92350377:92350460:92352631:92352704,	92350378	92350460	92350435	92350435	Nonsense_Mutation	G	T	p.E285X
COAD	TCGA-D5-6928-01	SLC2A1	ENST00000426263.3	chr1	43393285:43393479:43394602:43394704:43394880:43394985,	43394603	43394704	43394689	43394689	Nonsense_Mutation	G	A	p.R330X
COAD	TCGA-AZ-4315-01	SLC30A6	ENST00000282587.5,ENST00000357055.3,ENST00000454324.1,ENST00000435660.1,ENST00000379343.2,ENST00000457724.1	chr2	32390950:32390972:32396355:32396442:32399131:32399216,	32396356	32396442	32396374	32396374	Nonsense_Mutation	C	T	p.R8X
COAD	TCGA-AA-3713-01	SLC30A8	ENST00000456015.2,ENST00000518521.1	chr8	118147566:118147637:118159192:118159392:118165182:118165214,	118159193	118159392	118159336	118159336	Nonsense_Mutation	G	A	p.W72X
COAD	TCGA-CA-6717-01	SLC30A9	ENST00000510460.1,ENST00000264451.7	chr4	42003632:42003797:42020127:42020187:42022432:42022532,	42020128	42020187	42020145	42020145	Nonsense_Mutation	G	T	p.E98X
COAD	TCGA-CA-6717-01	SLC35A1	ENST00000464978.1,ENST00000369556.3,ENST00000369552.4,ENST00000369557.5	chr6	88187079:88187257:88210225:88210385:88210875:88211028,	88210226	88210385	88210227	88210227	Nonsense_Mutation	G	T	p.E66X
COAD	TCGA-D5-6928-01	SLC35C2	ENST00000543605.1,ENST00000243896.2,ENST00000484318.1,ENST00000372230.5,ENST00000372227.1	chr20	44983711:44983817:44984440:44984513:44985212:44985276,44983711:44983918:44984440:44984513:44985212:44985276,44983742:44983880:44984440:44984513:44985212:44985276,	44984441	44984513	44984449	44984449	Nonsense_Mutation	C	A	p.E134X
COAD	TCGA-AA-3510-01	SLC38A11	ENST00000409149.3	chr2	165802102:165802237:165809216:165809291:165811718:165811756,	165809217	165809291	165809228	165809228	Nonsense_Mutation	G	T	p.S17X
COAD	TCGA-AU-6004-01	SLC38A9	ENST00000396865.2,ENST00000515159.1,ENST00000524030.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54941616:54941723:54948356:54948551:54952542:54952602,54945037:54945142:54948356:54948551:54952542:54952602,	54948357	54948551	54948375	54948375	Nonsense_Mutation	A	-	p.S312X
COAD	TCGA-CM-4743-01	SLC38A9	ENST00000396865.2,ENST00000515159.1,ENST00000524030.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54941616:54941723:54948356:54948551:54952542:54952602,54945037:54945142:54948356:54948551:54952542:54952602,	54948357	54948551	54948375	54948375	Nonsense_Mutation	A	-	p.S285X
COAD	TCGA-AZ-4315-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545754	196545754	Nonsense_Mutation	G	T	p.E330X
COAD	TCGA-CM-5861-01	SLC44A4	ENST00000544672.1,ENST00000375562.4,ENST00000229729.6	chr6	31832786:31832857:31833091:31833165:31833274:31833378,	31833092	31833165	31833105	31833105	Nonsense_Mutation	G	A	p.R541X
COAD	TCGA-F4-6856-01	SLC5A10	ENST00000395645.3,ENST00000317977.6,ENST00000417251.2,ENST00000395642.1,ENST00000395647.2,ENST00000395643.2	chr17	18862916:18862976:18863860:18863965:18872364:18872470,	18863861	18863965	18863920	18863920	Nonsense_Mutation	C	A	p.Y136X
COAD	TCGA-A6-6141-01	SLC5A11	ENST00000449109.2,ENST00000569071.1	chr16	24888578:24888684:24895371:24895452:24902189:24902323,24888578:24888684:24895371:24895452:24909294:24909430,	24895372	24895452	24895428	24895428	Nonsense_Mutation	G	T	p.G144X
COAD	TCGA-AZ-4315-01	SLC6A15	ENST00000551818.1,ENST00000552192.1,ENST00000266682.5	chr12	85264340:85264449:85266380:85266573:85266865:85267043,	85266381	85266573	85266440	85266440	Nonsense_Mutation	C	A	p.E415X
COAD	TCGA-AA-3663-01	SLC7A8	ENST00000339733.5	chr14	23595967:23596552:23597227:23597573:23598858:23599008,	23597228	23597573	23597262	23597262	Nonsense_Mutation	C	T	p.W266X
COAD	TCGA-AA-3663-01	SLC7A8	ENST00000397310.2,ENST00000528860.1,ENST00000529705.2,ENST00000422941.2,ENST00000316902.7,ENST00000453702.1	chr14	23595967:23596552:23597227:23597405:23598858:23599008,	23597228	23597405	23597262	23597262	Nonsense_Mutation	C	T	p.W266X
COAD	TCGA-G4-6320-01	SLC9A5	ENST00000563723.1,ENST00000564812.1,ENST00000299798.11,ENST00000564704.1,ENST00000566626.1	chr16	67298254:67298425:67298942:67299009:67299990:67300128,	67298943	67299009	67298985	67298985	Nonsense_Mutation	C	T	p.R686X
COAD	TCGA-CA-6717-01	SLC9B1	ENST00000510243.1,ENST00000503584.1	chr4	103853280:103853456:103910956:103911098:103912799:103912869,	103910957	103911098	103911035	103911035	Nonsense_Mutation	C	A	p.E45X
COAD	TCGA-AA-3492-01	SLCO1A2	ENST00000422327.1,ENST00000463718.1,ENST00000452078.1,ENST00000390670.3,ENST00000307378.6,ENST00000453443.1,ENST00000480394.1	chr12	21459847:21459922:21467482:21467615:21487521:21487605,21459847:21459922:21467482:21467615:21471715:21471857,	21467483	21467615	21467593	21467593	Nonsense_Mutation	A	-	p.V76X
COAD	TCGA-AD-6964-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749492	33749493	Nonsense_Mutation	-	A	p.D186_R187delinsX
COAD	TCGA-AZ-6598-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749492	33749493	Nonsense_Mutation	-	A	p.D186_R187delinsX
COAD	TCGA-CA-6717-01	SLFN13	ENST00000285013.6	chr17	33770807:33770939:33771633:33772712:33774286:33774413,	33771634	33772712	33772633	33772633	Nonsense_Mutation	C	A	p.E23X
COAD	TCGA-CA-6717-01	SLFN13	ENST00000530782.1	chr17	33771633:33771720:33772391:33772712:33774286:33774413,	33772392	33772712	33772633	33772633	Nonsense_Mutation	C	A	p.E23X
COAD	TCGA-AM-5820-01	SLFN13	ENST00000285013.6	chr17	33770807:33770939:33771633:33772712:33774286:33774413,	33771634	33772712	33772658	33772658	Nonsense_Mutation	G	T	p.Y14X
COAD	TCGA-AM-5820-01	SLFN13	ENST00000530782.1	chr17	33771633:33771720:33772391:33772712:33774286:33774413,	33772392	33772712	33772658	33772658	Nonsense_Mutation	G	T	p.Y14X
COAD	TCGA-AA-3510-01	SLK	ENST00000369755.3,ENST00000335753.4	chr10	105761201:105761330:105761929:105763285:105765318:105765449,	105761930	105763285	105763109	105763109	Nonsense_Mutation	G	T	p.E725X
COAD	TCGA-CA-6717-01	SMAP2	ENST00000372718.3,ENST00000539317.1,ENST00000372708.1	chr1	40878687:40878774:40879830:40879912:40880943:40881041,	40879831	40879912	40879843	40879843	Nonsense_Mutation	G	T	p.E163X
COAD	TCGA-AZ-6598-01	SMARCAL1	ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217332666:217332769:217339991:217340174:217341831:217341932,	217339992	217340174	217340051	217340051	Nonsense_Mutation	C	A	p.C768X
COAD	TCGA-AZ-4315-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962834:72962954:72965029:72965209:72965291:72965387,	72965030	72965209	72965054	72965054	Nonsense_Mutation	C	T	p.R972X
COAD	TCGA-G4-6320-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962834:72962954:72965029:72965209:72965291:72965387,	72965030	72965209	72965054	72965054	Nonsense_Mutation	C	T	p.R972X
COAD	TCGA-CA-6718-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18853529:18853776:18856750:18856973:18858774:18858929,	18856751	18856973	18856972	18856972	Nonsense_Mutation	C	A	p.E2000X
COAD	TCGA-G4-6628-01	SMG5	ENST00000368267.5,ENST00000361813.5	chr1	156243151:156243241:156244387:156244477:156246875:156247032,	156244388	156244477	156244415	156244415	Nonsense_Mutation	G	A	p.R173X
COAD	TCGA-G4-6302-01	SMTN	ENST00000347557.2,ENST00000489337.1,ENST00000358743.1,ENST00000460658.1,ENST00000466272.1,ENST00000333137.7	chr22	31486093:31486166:31486793:31486865:31486946:31487013,	31486794	31486865	31486808	31486808	Nonsense_Mutation	C	T	p.R350X
COAD	TCGA-G4-6320-01	SMYD2	ENST00000366957.5,ENST00000471645.1,ENST00000415093.2	chr1	214454575:214454770:214478529:214478593:214488104:214488215,	214478530	214478593	214478537	214478537	Nonsense_Mutation	G	T	p.G61X
COAD	TCGA-DM-A28H-01	SNRK	ENST00000429705.2,ENST00000437827.1,ENST00000454177.1,ENST00000296088.7	chr3	43373660:43373802:43381778:43381991:43384835:43384970,	43381779	43381991	43381975	43381975	Nonsense_Mutation	C	T	p.R310X
COAD	TCGA-CM-6168-01	SNX1	ENST00000353874.4,ENST00000559061.1,ENST00000559844.1,ENST00000261889.5,ENST00000559389.1,ENST00000380285.3,ENST00000560829.1	chr15	64410401:64410443:64410986:64411053:64415701:64415745,	64410987	64411053	64410999	64410999	Nonsense_Mutation	G	T	p.E138X
COAD	TCGA-AA-3510-01	SNX2	ENST00000510372.1,ENST00000514949.1,ENST00000379516.2	chr5	122161744:122161888:122163073:122163154:122163269:122163341,	122163074	122163154	122163131	122163131	Nonsense_Mutation	C	T	p.R472X
COAD	TCGA-CA-6717-01	SNX2	ENST00000510372.1,ENST00000514949.1,ENST00000379516.2	chr5	122161744:122161888:122163073:122163154:122163269:122163341,	122163074	122163154	122163131	122163131	Nonsense_Mutation	C	T	p.R472X
COAD	TCGA-CA-6717-01	SORBS2	ENST00000437304.2,ENST00000498125.1,ENST00000448662.2,ENST00000319454.6,ENST00000449407.2,ENST00000451974.1,ENST00000438278.1,ENST00000319471.9,ENST00000393528.3	chr4	186541216:186541305:186547985:186548173:186551702:186551737,	186547986	186548173	186548067	186548067	Nonsense_Mutation	G	A	p.R369X
COAD	TCGA-CA-6717-01	SORBS2	ENST00000430503.1,ENST00000444781.1,ENST00000445115.1,ENST00000457247.1,ENST00000445343.1,ENST00000319454.6,ENST00000421639.1,ENST00000393523.2,ENST00000393528.3,ENST00000450341.1	chr4	186583388:186583396:186599576:186599632:186599949:186599976,	186599577	186599632	186599612	186599612	Nonsense_Mutation	G	A	p.R43X
COAD	TCGA-CA-6717-01	SORBS2	ENST00000414724.1,ENST00000451958.1,ENST00000419063.1,ENST00000355634.5,ENST00000493709.1,ENST00000439914.1,ENST00000435480.1,ENST00000448662.2,ENST00000470685.1,ENST00000449407.2,ENST00000456596.1,ENST00000431808.1,ENST00000457934.1,ENST00000431902.1,ENST00000439049.1,ENST00000284776.7,ENST00000415274.1,ENST00000432655.1,ENST00000420158.1,ENST00000319471.9,ENST00000425679.1,ENST00000444771.1	chr4	186583388:186583396:186599576:186599701:186599949:186599976,	186599577	186599701	186599612	186599612	Nonsense_Mutation	G	A	p.R43X
COAD	TCGA-A6-6141-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50649180:50649324:50655214:50655418:50666408:50666573,	50655215	50655418	50655256	50655256	Nonsense_Mutation	G	A	p.R225X
COAD	TCGA-CA-6717-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123900386:123900541:123949340:123949550:123977541:123977595,	123949341	123949550	123949434	123949434	Nonsense_Mutation	C	T	p.R655X
COAD	TCGA-A6-6781-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20108263	20108263	Nonsense_Mutation	A	-	p.Y219X
COAD	TCGA-AD-6895-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20108263	20108263	Nonsense_Mutation	A	-	p.Y219X
COAD	TCGA-AA-3510-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705871	35705871	Nonsense_Mutation	G	T	p.E876X
COAD	TCGA-AA-3510-01	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35709049:35709223:35712913:35712988:35727776:35727925,	35712914	35712988	35712934	35712934	Nonsense_Mutation	G	T	p.E954X
COAD	TCGA-CM-5861-01	SPG21	ENST00000560564.1	chr15	65268812:65268893:65273201:65273363:65275844:65275931,65268812:65268893:65273201:65273363:65282002:65282045,	65273202	65273363	65273309	65273309	Nonsense_Mutation	G	A	p.R40X
COAD	TCGA-CK-5913-01	SPIN1	ENST00000469017.2,ENST00000541629.1,ENST00000485804.1,ENST00000375859.3	chr9	91063855:91063904:91083286:91083520:91089992:91090118,91077410:91077664:91083286:91083520:91089992:91090118,	91083287	91083520	91083295	91083295	Nonsense_Mutation	C	T	p.R122X
COAD	TCGA-AZ-4315-01	SPOPL	ENST00000280098.4	chr2	139308543:139308624:139310123:139310251:139316591:139316769,	139310124	139310251	139310141	139310141	Nonsense_Mutation	C	T	p.R124X
COAD	TCGA-D5-6533-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466741	65466742	Nonsense_Mutation	-	A	p.Y484_N485delinsX
COAD	TCGA-D5-6924-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000373822.1,ENST00000423325.2,ENST00000346162.6	chr6	35838710:35838736:35840339:35840505:35842009:35842116,	35840340	35840505	35840499	35840499	Nonsense_Mutation	G	A	p.Q198X
COAD	TCGA-F4-6570-01	SRPX	ENST00000343800.6,ENST00000538295.1,ENST00000544439.1,ENST00000378533.3	chrX	38024021:38024148:38031133:38031310:38033412:38033604,	38031134	38031310	38031305	38031305	Nonsense_Mutation	G	A	p.R119X
COAD	TCGA-CA-6718-01	SRSF11	ENST00000463859.1,ENST00000370951.1,ENST00000370950.3,ENST00000484162.1,ENST00000405432.1,ENST00000370949.1,ENST00000395136.2	chr1	70703163:70703235:70705121:70705203:70710366:70710498,	70705122	70705203	70705149	70705149	Nonsense_Mutation	C	A	p.S249X
COAD	TCGA-AD-6964-01	SSRP1	ENST00000529002.1	chr11	57100908:57101014:57101936:57102122:57103203:57103347,	57101937	57102122	57101945	57101945	Nonsense_Mutation	G	A	p.R78X
COAD	TCGA-CM-6677-01	ST3GAL4	ENST00000534083.1,ENST00000524834.1,ENST00000534452.1,ENST00000444328.2,ENST00000526756.1,ENST00000532243.1,ENST00000526727.1,ENST00000392669.2,ENST00000449406.2,ENST00000531217.1,ENST00000528858.1,ENST00000526311.1,ENST00000528605.1	chr11	126276397:126276452:126276837:126276918:126277146:126277244,	126276838	126276918	126276863	126276863	Nonsense_Mutation	A	T	p.K43X
COAD	TCGA-G4-6588-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752605	8752605	Nonsense_Mutation	G	A	p.Q78X
COAD	TCGA-A6-6648-01	ST6GALNAC2	ENST00000225276.5,ENST00000588120.1,ENST00000588920.1	chr17	74566991:74567005:74568718:74568857:74569276:74569381,74566660:74566750:74568718:74568857:74569276:74569381,	74568719	74568857	74568775	74568775	Nonsense_Mutation	T	A	p.K205X
COAD	TCGA-AZ-4315-01	ST8SIA4	ENST00000231461.5	chr5	100142638:100147833:100191806:100192100:100222046:100222304,	100191807	100192100	100191997	100191997	Nonsense_Mutation	G	A	p.R203X
COAD	TCGA-CA-6717-01	ST8SIA6	ENST00000377602.4	chr10	17373406:17373551:17401512:17401599:17432529:17432619,	17401513	17401599	17401529	17401529	Nonsense_Mutation	C	A	p.E121X
COAD	TCGA-AZ-4315-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000487065.1,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136139934:136140005:136141251:136141455:136141609:136141699,	136141252	136141455	136141287	136141287	Nonsense_Mutation	G	A	p.R668X
COAD	TCGA-DM-A0XD-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000487065.1,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136139934:136140005:136141251:136141455:136141609:136141699,	136141252	136141455	136141317	136141317	Nonsense_Mutation	G	A	p.R658X
COAD	TCGA-AA-3663-01	STEAP1	ENST00000297205.2,ENST00000475789.1	chr7	89789071:89789186:89790118:89790631:89791227:89791392,	89790119	89790631	89790590	89790590	Nonsense_Mutation	C	T	p.R186X
COAD	TCGA-AD-6895-01	STIP1	ENST00000537479.1,ENST00000305218.4,ENST00000544739.1,ENST00000538497.1,ENST00000358794.5,ENST00000538945.1	chr11	63964742:63964869:63964964:63965067:63965325:63965446,	63964965	63965067	63965011	63965011	Nonsense_Mutation	T	A	p.C282X
COAD	TCGA-G4-6586-01	STK10	ENST00000176763.5	chr5	171509964:171510088:171517235:171517366:171520415:171520581,	171517236	171517366	171517246	171517246	Nonsense_Mutation	T	A	p.R559X
COAD	TCGA-AU-6004-01	STK33	ENST00000396672.1,ENST00000315204.1,ENST00000396673.1,ENST00000457885.2,ENST00000534493.1,ENST00000447869.1,ENST00000418597.1,ENST00000422559.2	chr11	8483351:8483456:8486255:8486369:8494709:8494823,	8486256	8486369	8486271	8486271	Nonsense_Mutation	T	-	p.V147X
COAD	TCGA-CA-6717-01	STX7	ENST00000367937.4,ENST00000448348.3,ENST00000367941.2	chr6	132792601:132792739:132793420:132793514:132796731:132796801,	132793421	132793514	132793477	132793477	Nonsense_Mutation	C	A	p.E65X
COAD	TCGA-AA-3510-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789X
COAD	TCGA-CA-6717-01	SUGP2	ENST00000601879.1,ENST00000337018.6,ENST00000452918.2,ENST00000456085.2,ENST00000598240.1,ENST00000594773.1,ENST00000600377.1,ENST00000330854.11	chr19	19105960:19106089:19112421:19112483:19114976:19115078,	19112422	19112483	19112469	19112469	Nonsense_Mutation	G	A	p.R982X
COAD	TCGA-G4-6309-01	SULT1A1	ENST00000562058.1,ENST00000314752.7,ENST00000395609.1,ENST00000563493.1,ENST00000566189.1,ENST00000395607.1,ENST00000569554.1,ENST00000564818.1	chr16	28619611:28619709:28619798:28619924:28620028:28620100,	28619799	28619924	28619859	28619859	Nonsense_Mutation	G	A	p.R72X
COAD	TCGA-AZ-4315-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29822011	29822011	Nonsense_Mutation	C	A	p.E429X
COAD	TCGA-AA-3511-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185190980:185191168:185200708:185200840:185240454:185240521,	185200709	185200840	185200836	185200836	Nonsense_Mutation	C	T	p.Q813X
COAD	TCGA-DM-A28F-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430287	115430287	Nonsense_Mutation	G	T	p.E411X
COAD	TCGA-CA-6717-01	SYDE1	ENST00000342784.2,ENST00000600440.1,ENST00000600252.1	chr19	15222123:15222250:15222442:15222603:15223156:15223382,	15222443	15222603	15222463	15222463	Nonsense_Mutation	C	T	p.R480X
COAD	TCGA-AZ-4615-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648793	85648793	Nonsense_Mutation	G	T	p.S511X
COAD	TCGA-AZ-4315-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40853589	40853589	Nonsense_Mutation	C	A	p.G269X
COAD	TCGA-AA-3510-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40853910	40853910	Nonsense_Mutation	C	A	p.E162X
COAD	TCGA-CA-6717-01	SYTL4	ENST00000263033.5,ENST00000454200.2,ENST00000372989.1,ENST00000455616.1,ENST00000276141.6	chrX	99936223:99936332:99940986:99941148:99941675:99941778,	99940987	99941148	99941136	99941136	Nonsense_Mutation	C	A	p.E434X
COAD	TCGA-AZ-4315-01	TADA3	ENST00000440161.1,ENST00000301964.2,ENST00000343450.2,ENST00000492103.1	chr3	9825711:9825897:9826999:9827109:9828689:9828793,	9827000	9827109	9827055	9827055	Nonsense_Mutation	C	A	p.E289X
COAD	TCGA-CM-5861-01	TAF4B	ENST00000400466.2,ENST00000418698.3,ENST00000269142.5	chr18	23861934:23862024:23865845:23866463:23872209:23872345,	23865846	23866463	23865900	23865900	Nonsense_Mutation	C	T	p.Q343X
COAD	TCGA-AA-3489-01	TAOK3	ENST00000537305.1,ENST00000537952.1,ENST00000419821.2,ENST00000392533.3	chr12	118615005:118615134:118619175:118619412:118627611:118627746,	118619176	118619412	118619364	118619364	Nonsense_Mutation	G	A	p.Q460X
COAD	TCGA-AA-3510-01	TARBP2	ENST00000550407.1,ENST00000552857.1	chr12	53898180:53898253:53898481:53898599:53899432:53899470,	53898482	53898599	53898557	53898557	Nonsense_Mutation	G	T	p.E170X
COAD	TCGA-CA-6717-01	TARBP2	ENST00000550407.1,ENST00000552857.1	chr12	53898180:53898253:53898481:53898599:53899432:53899470,	53898482	53898599	53898557	53898557	Nonsense_Mutation	G	T	p.E170X
COAD	TCGA-A6-6653-01	TASP1	ENST00000455532.1,ENST00000483898.1,ENST00000476108.1,ENST00000337743.4,ENST00000480436.1,ENST00000544472.1,ENST00000465381.1	chr20	13605831:13605899:13610580:13610799:13619540:13619550,	13610581	13610799	13610608	13610608	Nonsense_Mutation	G	A	p.R40X
COAD	TCGA-CA-6717-01	TBC1D14	ENST00000448507.1	chr4	6911170:6911232:6925099:6925838:6969030:6969151,	6925100	6925838	6925639	6925639	Nonsense_Mutation	G	T	p.E175X
COAD	TCGA-AZ-4315-01	TBC1D19	ENST00000512840.1,ENST00000264866.4,ENST00000513596.1,ENST00000502873.1,ENST00000504442.1,ENST00000515568.1	chr4	26616029:26616075:26622234:26622310:26638832:26638907,	26622235	26622310	26622281	26622281	Nonsense_Mutation	G	T	p.E89X
COAD	TCGA-A6-6654-01	TBC1D5	ENST00000429383.4,ENST00000253692.7,ENST00000414318.2	chr3	17255698:17255862:17279654:17279911:17299997:17300083,	17279655	17279911	17279658	17279658	Nonsense_Mutation	T	A	p.K529X
COAD	TCGA-CK-5913-01	TBC1D5	ENST00000429383.4,ENST00000253692.7,ENST00000414318.2	chr3	17255698:17255862:17279654:17279911:17299997:17300083,	17279655	17279911	17279667	17279667	Nonsense_Mutation	G	A	p.Q526X
COAD	TCGA-F4-6857-01	TBC1D8	ENST00000376840.4,ENST00000409318.1	chr2	101656639:101656847:101666862:101667103:101670569:101670798,	101666863	101667103	101666933	101666933	Nonsense_Mutation	G	A	p.R253X
COAD	TCGA-CA-6717-01	TBC1D8B	ENST00000357242.5,ENST00000276175.3	chrX	106096741:106096880:106097427:106097526:106108788:106108857,	106097428	106097526	106097473	106097473	Nonsense_Mutation	C	T	p.R767X
COAD	TCGA-G4-6302-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883453	145883453	Nonsense_Mutation	C	T	p.R851X
COAD	TCGA-CM-6678-01	TCF7L2	ENST00000470254.1	chr10	114917795:114917828:114920377:114920450:114925313:114925346,114918425:114918476:114920377:114920450:114925313:114925346,114919678:114919751:114920377:114920450:114925313:114925346,114919678:114919751:114920377:114920450:114921337:114921362,	114920378	114920450	114920422	114920422	Nonsense_Mutation	C	T	p.R432X
COAD	TCGA-AA-3697-01	TCN2	ENST00000407817.3	chr22	31003190:31003382:31006857:31007050:31008859:31008948,	31006858	31007050	31006916	31006916	Nonsense_Mutation	G	A	p.W41X
COAD	TCGA-CA-6717-01	TDRD3	ENST00000377881.2,ENST00000377882.3,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61018820:61018882:61034513:61034674:61041371:61041513,	61034514	61034674	61034649	61034649	Nonsense_Mutation	G	T	p.E17X
COAD	TCGA-CA-6718-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103094	61103094	Nonsense_Mutation	C	T	p.R486X
COAD	TCGA-AZ-4315-01	TEK	ENST00000406359.4,ENST00000519097.1,ENST00000380036.4	chr9	27218774:27218815:27220046:27220143:27228203:27228303,	27220047	27220143	27220079	27220079	Nonsense_Mutation	G	T	p.E1046X
COAD	TCGA-AD-6895-01	TEX14	ENST00000582740.1,ENST00000389934.3,ENST00000349033.5,ENST00000240361.8	chr17	56634040:56634408:56635159:56635211:56636813:56636923,	56635160	56635211	56635191	56635191	Nonsense_Mutation	A	-	p.W1476X
COAD	TCGA-AD-5900-01	TEX14	ENST00000582740.1,ENST00000389934.3,ENST00000349033.5,ENST00000240361.8	chr17	56679166:56679317:56679760:56679951:56682338:56682490,	56679761	56679951	56679811	56679811	Nonsense_Mutation	G	A	p.R493X
COAD	TCGA-CA-6717-01	TEX9	ENST00000352903.2,ENST00000537232.1	chr15	56704499:56704634:56719802:56719937:56720564:56720671,	56719803	56719937	56719818	56719818	Nonsense_Mutation	G	T	p.E327X
COAD	TCGA-AZ-4315-01	TF	ENST00000494430.1	chr3	133472438:133472547:133473346:133473515:133474206:133474258,	133473347	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132X
COAD	TCGA-AZ-4315-01	TF	ENST00000493011.1,ENST00000482271.1,ENST00000264998.3,ENST00000402696.3	chr3	133472438:133472547:133473338:133473515:133474206:133474258,	133473339	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132X
COAD	TCGA-AD-6965-01	TFB1M	ENST00000367166.4	chr6	155578806:155579042:155581406:155581534:155606291:155606333,155579110:155579216:155581406:155581534:155606291:155606333,	155581407	155581534	155581417	155581417	Nonsense_Mutation	G	A	p.R262X
COAD	TCGA-AD-6965-01	TFB1M	ENST00000495806.1	chr6	155579110:155579216:155581406:155581702:155606291:155606333,	155581407	155581702	155581417	155581417	Nonsense_Mutation	G	A	p.R262X
COAD	TCGA-D5-6531-01	TFB1M	ENST00000367166.4	chr6	155578806:155579042:155581406:155581534:155606291:155606333,155579110:155579216:155581406:155581534:155606291:155606333,	155581407	155581534	155581435	155581435	Nonsense_Mutation	G	A	p.R256X
COAD	TCGA-D5-6531-01	TFB1M	ENST00000495806.1	chr6	155579110:155579216:155581406:155581702:155606291:155606333,	155581407	155581702	155581435	155581435	Nonsense_Mutation	G	A	p.R256X
COAD	TCGA-CA-6717-01	TGFBR1	ENST00000374994.4,ENST00000549766.1,ENST00000550253.1,ENST00000374990.2,ENST00000552516.1	chr9	101900140:101900371:101904817:101904985:101907013:101907170,	101904818	101904985	101904885	101904885	Nonsense_Mutation	C	A	p.Y291X
COAD	TCGA-D5-5541-01	TGFBR1	ENST00000374994.4,ENST00000550253.1,ENST00000374990.2,ENST00000552516.1	chr9	101907013:101907170:101908766:101908891:101909935:101910066,	101908767	101908891	101908873	101908873	Nonsense_Mutation	C	T	p.R413X
COAD	TCGA-AA-3510-01	TGM3	ENST00000381458.5	chr20	2306494:2306598:2308765:2309011:2312647:2312956,	2308766	2309011	2308804	2308804	Nonsense_Mutation	C	T	p.R376X
COAD	TCGA-G4-6302-01	THBS1	ENST00000260356.5	chr15	39880321:39880419:39880726:39880900:39881159:39881287,	39880727	39880900	39880757	39880757	Nonsense_Mutation	G	A	p.W501X
COAD	TCGA-AA-3510-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150816	128150816	Nonsense_Mutation	C	A	p.E172X
COAD	TCGA-AA-3510-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000510781.2,ENST00000403537.3,ENST00000505747.1,ENST00000454352.2	chr2	39997156:39997259:39998644:39998780:40006253:40006380,	39998645	39998780	39998698	39998698	Nonsense_Mutation	A	C	p.L70X
COAD	TCGA-AA-3510-01	THUMPD2	ENST00000530522.1	chr2	39997156:39997259:39998654:39998780:40006253:40006380,	39998655	39998780	39998698	39998698	Nonsense_Mutation	A	C	p.L70X
COAD	TCGA-A6-6141-01	TIMM44	ENST00000600748.1,ENST00000270538.3,ENST00000595831.1	chr19	7999949:8000030:8002911:8003082:8005986:8006082,	8002912	8003082	8002998	8002998	Nonsense_Mutation	C	A	p.E76X
COAD	TCGA-CA-6717-01	TLK2	ENST00000581041.1,ENST00000578697.1,ENST00000343388.7,ENST00000542523.1,ENST00000346027.5,ENST00000582809.1	chr17	60642361:60642498:60650575:60650728:60654069:60654089,	60650576	60650728	60650613	60650613	Nonsense_Mutation	G	T	p.E336X
COAD	TCGA-CA-6717-01	TM4SF19	ENST00000273695.3,ENST00000446879.1	chr3	196051141:196051311:196053825:196053903:196054260:196054462,	196053826	196053903	196053831	196053831	Nonsense_Mutation	G	A	p.R92X
COAD	TCGA-G4-6320-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19485486:19485598:19488761:19488840:19490752:19490850,	19488762	19488840	19488804	19488804	Nonsense_Mutation	C	A	p.Y465X
COAD	TCGA-AZ-4315-01	TMEM30A	ENST00000370050.5,ENST00000518161.1,ENST00000230461.6	chr6	75970539:75970627:75974946:75975054:75977356:75977464,	75974947	75975054	75974988	75974988	Nonsense_Mutation	G	A	p.R138X
COAD	TCGA-CM-6164-01	TMEM41B	ENST00000299596.4	chr11	9302200:9302588:9304917:9305140:9308001:9308140,	9304918	9305140	9304982	9304982	Nonsense_Mutation	T	A	p.K289X
COAD	TCGA-G4-6295-01	TMEM8A	ENST00000250930.3,ENST00000431232.2	chr16	426135:426455:426543:426812:427036:427164,	426544	426812	426618	426618	Nonsense_Mutation	C	T	p.W277X
COAD	TCGA-AD-6895-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69073205:69073331:69074710:69074863:69075146:69075248,	69074711	69074863	69074743	69074743	Nonsense_Mutation	T	A	p.K994X
COAD	TCGA-CA-6718-01	TMPO	ENST00000343315.5	chr12	98938007:98938127:98938219:98938315:98938728:98938839,98931252:98931350:98938219:98938315:98938728:98938839,	98938220	98938315	98938307	98938307	Nonsense_Mutation	G	T	p.E291X
COAD	TCGA-AA-3492-01	TMPRSS2	ENST00000398585.3,ENST00000458356.1,ENST00000332149.5	chr21	42837935:42838080:42839660:42839813:42840322:42840465,	42839661	42839813	42839672	42839672	Nonsense_Mutation	G	A	p.R523X
COAD	TCGA-G4-6309-01	TNC	ENST00000341037.4	chr9	117822133:117822281:117826074:117826347:117826925:117827191,	117826075	117826347	117826075	117826075	Nonsense_Mutation	C	A	p.E1254X
COAD	TCGA-AZ-6601-01	TNC	ENST00000350763.4,ENST00000423613.2,ENST00000341037.4	chr9	117826074:117826347:117826925:117827198:117835881:117835920,	117826926	117827198	117827110	117827110	Nonsense_Mutation	A	T	p.Y1101X
COAD	TCGA-AA-3492-01	TNFRSF11A	ENST00000586569.1	chr18	60028912:60029026:60033940:60033993:60035933:60036717,	60033941	60033993	60033951	60033951	Nonsense_Mutation	G	A	p.W247X
COAD	TCGA-D5-6928-01	TNFRSF8	ENST00000263932.2,ENST00000413146.2	chr1	12195644:12195670:12198285:12198493:12202343:12204264,	12198286	12198493	12198391	12198391	Nonsense_Mutation	G	T	p.E18X
COAD	TCGA-D5-6928-01	TNFRSF8	ENST00000514649.1,ENST00000417814.2	chr1	12195644:12195670:12198288:12198493:12202343:12204264,	12198289	12198493	12198391	12198391	Nonsense_Mutation	G	T	p.E18X
COAD	TCGA-AA-3663-01	TNNT2	ENST00000466570.1,ENST00000458432.2,ENST00000491504.1,ENST00000455702.1,ENST00000360372.4,ENST00000438742.1,ENST00000367322.1,ENST00000515042.1,ENST00000367315.2,ENST00000421663.2,ENST00000367318.5,ENST00000236918.7,ENST00000503459.1,ENST00000509001.1,ENST00000367317.4	chr1	201333425:201333503:201334318:201334435:201334737:201334798,	201334319	201334435	201334414	201334414	Nonsense_Mutation	C	A	p.E106X
COAD	TCGA-CK-5916-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662665	40662665	Nonsense_Mutation	C	T	p.R811X
COAD	TCGA-G4-6320-01	TNRC6B	ENST00000402203.1,ENST00000335727.9,ENST00000301923.9,ENST00000446273.1,ENST00000454349.2	chr22	40696458:40696590:40696913:40697009:40697153:40697337,	40696914	40697009	40696935	40696935	Nonsense_Mutation	C	T	p.Q1178X
COAD	TCGA-CM-6171-01	TOM1L1	ENST00000540336.1,ENST00000571319.1	chr17	52978237:52978284:52990026:52990176:52991108:52991207,52982849:52982928:52990026:52990176:52991108:52991207,52981073:52981153:52990026:52990176:52991108:52991207,	52990027	52990176	52990045	52990045	Nonsense_Mutation	C	T	p.Q81X
COAD	TCGA-CM-6165-01	TOP2B	ENST00000264331.4,ENST00000435706.2	chr3	25656695:25656779:25656921:25657077:25659908:25660000,	25656922	25657077	25656960	25656960	Nonsense_Mutation	C	A	p.E1152X
COAD	TCGA-G4-6586-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25672291:25672430:25673936:25674074:25674183:25674285,	25673937	25674074	25673942	25673943	Nonsense_Mutation	-	A	p.K416_A417delinsX
COAD	TCGA-AZ-4315-01	TOR1AIP1	ENST00000474875.1,ENST00000529091.1,ENST00000435319.4,ENST00000527391.1,ENST00000606911.2,ENST00000524653.1	chr1	179853826:179853904:179858447:179858504:179870436:179870522,179853826:179853904:179858447:179858504:179869260:179869302,	179858448	179858504	179858477	179858477	Nonsense_Mutation	C	T	p.R195X
COAD	TCGA-AZ-4315-01	TOR1AIP1	ENST00000528443.2,ENST00000531726.1,ENST00000271583.3	chr1	179853826:179853904:179858444:179858504:179869260:179869302,	179858445	179858504	179858477	179858477	Nonsense_Mutation	C	T	p.R195X
COAD	TCGA-D5-6930-01	TOX4	ENST00000448790.2,ENST00000262709.3,ENST00000405508.1,ENST00000455393.1	chr14	21960666:21961416:21963387:21963551:21964703:21964913,	21963388	21963551	21963446	21963446	Nonsense_Mutation	C	A	p.S567X
COAD	TCGA-CM-6675-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342X
COAD	TCGA-F4-6808-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342X
COAD	TCGA-CK-5916-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
COAD	TCGA-CM-6169-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
COAD	TCGA-F4-6856-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
COAD	TCGA-A6-6654-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577085	7577085	Nonsense_Mutation	C	A	p.E285X
COAD	TCGA-AD-6965-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
COAD	TCGA-AY-5543-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
COAD	TCGA-G4-6303-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
COAD	TCGA-G4-6314-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
COAD	TCGA-G4-6586-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
COAD	TCGA-A6-2675-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198X
COAD	TCGA-G4-6299-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
COAD	TCGA-CM-6172-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579389	7579389	Nonsense_Mutation	G	A	p.Q100X
COAD	TCGA-CA-6718-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579406	Nonsense_Mutation	G	T	p.S94X
COAD	TCGA-CM-5860-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579415	7579415	Nonsense_Mutation	C	T	p.W91X
COAD	TCGA-CM-6162-01	TP53AIP1	ENST00000527504.1	chr11	128806432:128806544:128806656:128807729:128812688:128812822,	128806657	128807729	128807551	128807551	Nonsense_Mutation	G	A	p.R55X
COAD	TCGA-D5-6930-01	TP53BP2	ENST00000473135.1,ENST00000343537.7	chr1	223998165:223998215:224001941:224002055:224008921:224009069,	224001942	224002055	224002011	224002011	Nonsense_Mutation	G	A	p.R74X
COAD	TCGA-AZ-6598-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041393	20041394	Nonsense_Mutation	-	A	p.D162_I163delinsX
COAD	TCGA-CA-6718-01	TRAF2	ENST00000359662.3	chr9	139794045:139794124:139794873:139795128:139802521:139802670,	139794874	139795128	139794964	139794964	Nonsense_Mutation	G	T	p.E120X
COAD	TCGA-CA-6718-01	TRAF2	ENST00000247668.2,ENST00000429509.1,ENST00000419057.1,ENST00000536468.1	chr9	139794045:139794124:139794873:139794972:139802521:139802670,	139794874	139794972	139794964	139794964	Nonsense_Mutation	G	T	p.E120X
COAD	TCGA-CA-6717-01	TRAF3IP1	ENST00000373327.4	chr2	239247002:239247098:239253137:239253239:239256095:239256116,	239253138	239253239	239253146	239253146	Nonsense_Mutation	G	T	p.E390X
COAD	TCGA-AA-3510-01	TRAF5	ENST00000488428.1	chr1	211529708:211529810:211533223:211533418:211534043:211534121,	211533224	211533418	211533365	211533365	Nonsense_Mutation	C	T	p.R164X
COAD	TCGA-AA-3510-01	TRAF5	ENST00000336184.2,ENST00000261464.5,ENST00000367004.3	chr1	211529708:211529810:211533253:211533418:211534043:211534121,	211533254	211533418	211533365	211533365	Nonsense_Mutation	C	T	p.R164X
COAD	TCGA-G4-6628-01	TRIM24	ENST00000343526.4,ENST00000464210.1,ENST00000497516.1,ENST00000415680.2	chr7	138199956:138200104:138203933:138204066:138209985:138210059,	138203934	138204066	138203957	138203957	Nonsense_Mutation	C	T	p.R219X
COAD	TCGA-A6-4105-01	TRIM36	ENST00000513154.1	chr5	114482872:114483091:114499214:114499449:114505304:114505427,	114499215	114499449	114499401	114499401	Nonsense_Mutation	C	A	p.E38X
COAD	TCGA-AD-6964-01	TRIM46	ENST00000368382.1,ENST00000545012.1,ENST00000368385.4,ENST00000468878.1,ENST00000392451.2,ENST00000474430.1,ENST00000334634.4,ENST00000543729.1,ENST00000368383.3	chr1	155149670:155149766:155150477:155150731:155150967:155151089,	155150478	155150731	155150502	155150502	Nonsense_Mutation	G	T	p.E289X
COAD	TCGA-CK-5913-01	TRIM66	ENST00000299550.6,ENST00000402157.2,ENST00000481014.2	chr11	8639310:8639550:8640296:8640515:8640929:8641082,	8640297	8640515	8640308	8640308	Nonsense_Mutation	G	A	p.R1194X
COAD	TCGA-F4-6570-01	TRIM66	ENST00000299550.6,ENST00000402157.2,ENST00000481014.2	chr11	8639310:8639550:8640296:8640515:8640929:8641082,	8640297	8640515	8640308	8640308	Nonsense_Mutation	G	A	p.R1194X
COAD	TCGA-AU-6004-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14488223	14488223	Nonsense_Mutation	C	T	p.R2496X
COAD	TCGA-AZ-4315-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92471238	92471238	Nonsense_Mutation	G	A	p.R1028X
COAD	TCGA-AA-3510-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377203	77377203	Nonsense_Mutation	C	A	p.E1457X
COAD	TCGA-CA-6717-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616298	116616298	Nonsense_Mutation	G	T	p.S633X
COAD	TCGA-G4-6588-01	TSEN34	ENST00000396383.1,ENST00000396388.2,ENST00000302937.4,ENST00000429671.2,ENST00000496583.1	chr19	54695571:54695815:54695966:54696224:54697029:54697173,	54695967	54696224	54696220	54696220	Nonsense_Mutation	T	G	p.Y247X
COAD	TCGA-AZ-4315-01	TSN	ENST00000495112.1	chr2	122514815:122514909:122516285:122516382:122518984:122519100,122513260:122513421:122516285:122516382:122518984:122519100,	122516286	122516382	122516312	122516312	Nonsense_Mutation	G	T	p.E63X
COAD	TCGA-AD-6889-01	TTC21A	ENST00000440121.1,ENST00000430597.2	chr3	39159559:39159644:39161412:39161511:39162487:39162680,	39161413	39161511	39161506	39161506	Nonsense_Mutation	C	T	p.R258X
COAD	TCGA-CA-6717-01	TTC21B	ENST00000464374.1,ENST00000243344.7	chr2	166802033:166802200:166805903:166806014:166806104:166806234,	166805904	166806014	166805994	166805994	Nonsense_Mutation	G	A	p.R58X
COAD	TCGA-AZ-6598-01	TTC22	ENST00000371276.4	chr1	55247997:55248150:55251655:55251817:55252629:55252748,	55251656	55251817	55251700	55251700	Nonsense_Mutation	G	A	p.R326X
COAD	TCGA-AZ-4315-01	TTC23L	ENST00000502674.1,ENST00000505624.1,ENST00000514080.1,ENST00000506758.1	chr5	34845591:34845778:34850289:34850413:34863002:34863115,	34850290	34850413	34850317	34850317	Nonsense_Mutation	C	T	p.R95X
COAD	TCGA-CA-6717-01	TTC23L	ENST00000502674.1,ENST00000505624.1,ENST00000514080.1,ENST00000506758.1	chr5	34845591:34845778:34850289:34850413:34863002:34863115,	34850290	34850413	34850317	34850317	Nonsense_Mutation	C	T	p.R95X
COAD	TCGA-G4-6317-01	TTC33	ENST00000511730.2	chr5	40730363:40730445:40746899:40747121:40755925:40756047,	40746900	40747121	40747036	40747036	Nonsense_Mutation	C	A	p.E29X
COAD	TCGA-CA-6717-01	TTC8	ENST00000554686.1,ENST00000345383.5,ENST00000338104.6,ENST00000536576.1,ENST00000556651.1,ENST00000556567.1,ENST00000346301.4,ENST00000555057.1	chr14	89291082:89291165:89305795:89305916:89307208:89307267,	89305796	89305916	89305829	89305829	Nonsense_Mutation	G	T	p.E50X
COAD	TCGA-A6-5665-01	TTLL11	ENST00000474723.1	chr9	124737162:124737258:124751473:124752049:124794001:124794135,124737162:124737258:124751473:124752049:124801550:124801647,	124751474	124752049	124751971	124751971	Nonsense_Mutation	C	A	p.G348X
COAD	TCGA-AZ-4615-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605584	179605584	Nonsense_Mutation	C	A	p.E3809X
COAD	TCGA-AA-3713-01	TTN	ENST00000342175.6	chr2	179617850:179617907:179620948:179621524:179623710:179623899,	179620949	179621524	179621399	179621399	Nonsense_Mutation	G	A	p.Q3431X
COAD	TCGA-CA-6717-01	TTN	ENST00000359218.5	chr2	179617850:179617907:179622268:179622643:179623710:179623899,	179622269	179622643	179622336	179622336	Nonsense_Mutation	G	T	p.Y3491X
COAD	TCGA-CA-6717-01	TTN	ENST00000359218.5,ENST00000342175.6,ENST00000460472.2	chr2	179654086:179654224:179654704:179654842:179656798:179656924,	179654705	179654842	179654731	179654731	Nonsense_Mutation	C	A	p.E638X
COAD	TCGA-CA-6717-01	TTN	ENST00000359218.5,ENST00000342175.6,ENST00000460472.2	chr2	179654086:179654224:179654704:179654842:179656798:179656924,	179654705	179654842	179654779	179654779	Nonsense_Mutation	C	A	p.E622X
COAD	TCGA-AZ-4315-01	TUBA1A	ENST00000295766.5,ENST00000550767.1,ENST00000552924.1,ENST00000547939.1,ENST00000301071.7	chr12	49579707:49579773:49580092:49580241:49580393:49580616,	49580093	49580241	49580179	49580179	Nonsense_Mutation	C	A	p.E97X
COAD	TCGA-AZ-4315-01	U2SURP	ENST00000488497.3,ENST00000493598.2,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142769780:142769891:142772517:142772636:142775153:142775342,142769780:142769891:142772517:142772636:142773784:142773961,	142772518	142772636	142772569	142772569	Nonsense_Mutation	G	T	p.E903X
COAD	TCGA-D5-6930-01	UBE2L3	ENST00000496722.1	chr22	21922025:21922060:21947149:21947245:21965145:21965332,21922018:21922666:21947149:21947245:21965145:21965332,	21947150	21947245	21947227	21947227	Nonsense_Mutation	G	A	p.W35X
COAD	TCGA-CM-6171-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25584283:25584404:25585231:25585375:25599499:25599573,	25585232	25585375	25585287	25585287	Nonsense_Mutation	C	A	p.G815X
COAD	TCGA-D5-6532-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2,ENST00000604860.1	chr15	25599674:25599830:25601038:25601203:25601837:25601977,	25601039	25601203	25601194	25601194	Nonsense_Mutation	G	A	p.Q657X
COAD	TCGA-A6-5665-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616652	25616652	Nonsense_Mutation	T	-	p.L204X
COAD	TCGA-AD-6901-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616657	25616657	Nonsense_Mutation	G	A	p.Q222X
COAD	TCGA-AZ-4315-01	UBLCP1	ENST00000296786.6,ENST00000519276.1	chr5	158705245:158705362:158710219:158710347:158711911:158713044,	158710220	158710347	158710265	158710265	Nonsense_Mutation	G	T	p.E283X
COAD	TCGA-AA-3510-01	UBXN4	ENST00000426921.1	chr2	136505836:136505939:136513086:136513261:136519387:136519451,	136513087	136513261	136513168	136513168	Nonsense_Mutation	G	T	p.E139X
COAD	TCGA-CM-4746-01	UCHL5	ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998661:192998787:193018875:193018981:193020883:193020947,	193018876	193018981	193018905	193018905	Nonsense_Mutation	G	A	p.R73X
COAD	TCGA-AA-3510-01	ULK4	ENST00000301831.4	chr3	41723243:41723295:41746548:41746643:41746745:41746797,	41746549	41746643	41746626	41746626	Nonsense_Mutation	C	A	p.E902X
COAD	TCGA-AZ-6600-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1	chr14	94097146:94097254:94100866:94100983:94103561:94103645,	94100867	94100983	94100938	94100938	Nonsense_Mutation	G	T	p.E1753X
COAD	TCGA-DM-A28H-01	UNC80	ENST00000439458.1,ENST00000489023.1,ENST00000272845.6	chr2	210810570:210810667:210818823:210818994:210822367:210822460,	210818824	210818994	210818853	210818853	Nonsense_Mutation	T	G	p.L2368X
COAD	TCGA-CA-6718-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057115	115057115	Nonsense_Mutation	C	T	p.R232X
COAD	TCGA-AA-3663-01	UPF3A	ENST00000475218.2,ENST00000375299.3,ENST00000351487.5	chr13	115064314:115064475:115067205:115067500:115070263:115070424,	115067206	115067500	115067441	115067441	Nonsense_Mutation	G	T	p.G415X
COAD	TCGA-AY-6386-01	URI1	ENST00000542441.2,ENST00000574176.1,ENST00000574110.1,ENST00000360605.4,ENST00000392271.1,ENST00000312051.6	chr19	30496557:30496615:30498376:30498545:30499911:30499926,	30498377	30498545	30498385	30498385	Nonsense_Mutation	C	T	p.R176X
COAD	TCGA-D5-6538-01	USP10	ENST00000567526.1	chr16	84801872:84801964:84806146:84806291:84808765:84808831,84801872:84801964:84806146:84806291:84812500:84812593,	84806147	84806291	84806210	84806210	Nonsense_Mutation	C	T	p.R688X
COAD	TCGA-AZ-6598-01	USP19	ENST00000417901.1,ENST00000306026.5,ENST00000434032.2	chr3	49154166:49154376:49154491:49154794:49154899:49155003,49154166:49154376:49154491:49154794:49154869:49154992,	49154492	49154794	49154737	49154737	Nonsense_Mutation	G	A	p.Q212X
COAD	TCGA-AZ-6598-01	USP19	ENST00000398892.3,ENST00000398898.2	chr3	49154166:49154376:49154491:49154791:49154869:49154992,	49154492	49154791	49154737	49154737	Nonsense_Mutation	G	A	p.Q212X
COAD	TCGA-AD-6889-01	USP25	ENST00000400183.2,ENST00000285679.6,ENST00000285681.2	chr21	17203719:17203948:17205666:17205867:17214716:17214859,	17205667	17205867	17205756	17205756	Nonsense_Mutation	C	T	p.R695X
COAD	TCGA-AY-6197-01	USP28	ENST00000003302.4	chr11	113675649:113675768:113677210:113677306:113679019:113679159,	113677211	113677306	113677252	113677252	Nonsense_Mutation	G	A	p.Q787X
COAD	TCGA-D5-6922-01	USP28	ENST00000537642.1	chr11	113702641:113702715:113704141:113704279:113711319:113711479,	113704142	113704279	113704162	113704162	Nonsense_Mutation	G	A	p.R247X
COAD	TCGA-AA-3510-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113704982	113704982	Nonsense_Mutation	G	A	p.R204X
COAD	TCGA-D5-6533-01	USP28	ENST00000542033.1,ENST00000540438.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113712384:113712490:113723222:113723355:113724979:113725057,	113723223	113723355	113723235	113723235	Nonsense_Mutation	C	A	p.E86X
COAD	TCGA-CM-5860-01	USP5	ENST00000542087.1,ENST00000389231.5	chr12	6961316:6961454:6964564:6964690:6964918:6964985,	6964565	6964690	6964655	6964655	Nonsense_Mutation	C	T	p.R68X
COAD	TCGA-D5-6540-01	USP8	ENST00000433963.1,ENST00000396444.3,ENST00000307179.4	chr15	50769472:50769696:50773677:50774262:50781997:50782078,50769472:50769696:50773677:50774262:50776471:50776558,	50773678	50774262	50773954	50773954	Nonsense_Mutation	C	T	p.Q499X
COAD	TCGA-AA-3510-01	UST	ENST00000367463.4	chr6	149262414:149262570:149275007:149275087:149285545:149285699,	149275008	149275087	149275059	149275059	Nonsense_Mutation	C	T	p.R167X
COAD	TCGA-G4-6321-01	VAV3	ENST00000370056.4,ENST00000343258.4,ENST00000529413.1,ENST00000525231.1,ENST00000525460.1,ENST00000529033.1,ENST00000479977.2,ENST00000415432.2,ENST00000544443.1,ENST00000527011.1	chr1	108152552:108152587:108160188:108160254:108185240:108185377,	108160189	108160254	108160195	108160195	Nonsense_Mutation	G	T	p.C658X
COAD	TCGA-AZ-4315-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816187	82816187	Nonsense_Mutation	G	T	p.E688X
COAD	TCGA-AZ-4315-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82834355	82834355	Nonsense_Mutation	G	T	p.E858X
COAD	TCGA-G4-6309-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316484	133316484	Nonsense_Mutation	G	A	p.R163X
COAD	TCGA-D5-6541-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100589717:100589861:100654038:100654726:100673581:100673719,	100654039	100654726	100654048	100654048	Nonsense_Mutation	C	T	p.Q1744X
COAD	TCGA-CM-4746-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100796542:100796704:100821602:100821758:100829767:100830031,	100821603	100821758	100821644	100821644	Nonsense_Mutation	G	A	p.W2661X
COAD	TCGA-AA-3510-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62214595:62214961:62217654:62217747:62219289:62219519,	62217655	62217747	62217669	62217669	Nonsense_Mutation	C	A	p.E2156X
COAD	TCGA-D5-6928-01	VPS53	ENST00000573028.1,ENST00000575207.1,ENST00000401468.3,ENST00000574029.1,ENST00000291074.5,ENST00000446250.2,ENST00000389040.5,ENST00000571805.1	chr17	602582:602620:613772:613853:617862:617949,	613773	613853	613826	613826	Nonsense_Mutation	G	A	p.R39X
COAD	TCGA-AZ-4315-01	VPS8	ENST00000436792.2,ENST00000446204.2,ENST00000437079.3	chr3	184529983:184530013:184542332:184542573:184543950:184544019,	184542333	184542573	184542484	184542484	Nonsense_Mutation	G	T	p.E22X
COAD	TCGA-AD-6964-01	VPS8	ENST00000436792.2,ENST00000492449.1,ENST00000287546.4,ENST00000446204.2,ENST00000437079.3	chr3	184717483:184717649:184742123:184742177:184766266:184766347,	184742124	184742177	184742172	184742172	Nonsense_Mutation	A	T	p.K1351X
COAD	TCGA-G4-6628-01	VWA3A	ENST00000566668.1,ENST00000568328.1,ENST00000389397.4,ENST00000389398.5	chr16	22103862:22103972:22108179:22108266:22111514:22111639,22103862:22103972:22108179:22108266:22108892:22109016,	22108180	22108266	22108214	22108214	Nonsense_Mutation	C	T	p.Q17X
COAD	TCGA-AA-3713-01	WDFY4	ENST00000325239.5	chr10	49986655:49986877:49987985:49988164:49994683:49994915,	49987986	49988164	49988141	49988141	Nonsense_Mutation	G	T	p.G1185X
COAD	TCGA-CM-5864-01	WDR19	ENST00000502389.1,ENST00000503697.1,ENST00000288634.7,ENST00000506869.1,ENST00000506503.1	chr4	39184167:39184183:39187345:39187437:39188158:39188224,	39187346	39187437	39187401	39187401	Nonsense_Mutation	G	A	p.W21X
COAD	TCGA-G4-6303-01	WDR26	ENST00000295024.6,ENST00000486652.1,ENST00000414423.2,ENST00000366852.2,ENST00000480676.2	chr1	224581529:224581715:224585798:224585928:224586216:224586295,	224585799	224585928	224585868	224585868	Nonsense_Mutation	G	A	p.Q569X
COAD	TCGA-D5-6930-01	WDR41	ENST00000515253.1,ENST00000507029.1,ENST00000296679.4,ENST00000502528.1,ENST00000414719.2	chr5	76728717:76729112:76732085:76732219:76733160:76733249,	76732086	76732219	76732204	76732204	Nonsense_Mutation	C	T	p.W370X
COAD	TCGA-AA-3663-01	WDR49	ENST00000493061.1	chr3	167240119:167240272:167246839:167247027:167248902:167248977,	167246840	167247027	167247001	167247001	Nonsense_Mutation	C	A	p.G397X
COAD	TCGA-AZ-4315-01	WDR64	ENST00000425826.2,ENST00000468967.2,ENST00000366552.2,ENST00000437684.2,ENST00000472717.2,ENST00000414635.1	chr1	241943305:241943364:241946573:241946683:241951150:241951196,	241946574	241946683	241946597	241946597	Nonsense_Mutation	G	A	p.W863X
COAD	TCGA-A6-5665-01	WDR70	ENST00000511906.1,ENST00000510699.1,ENST00000265107.4	chr5	37697756:37697856:37701159:37701244:37703050:37703106,	37701160	37701244	37701189	37701189	Nonsense_Mutation	C	T	p.R408X
COAD	TCGA-CA-6718-01	WDR72	ENST00000557913.1,ENST00000560036.1,ENST00000396328.1,ENST00000360509.5,ENST00000559418.1	chr15	54003532:54003678:54004968:54005088:54006630:54006704,	54004969	54005088	54005064	54005064	Nonsense_Mutation	C	A	p.E206X
COAD	TCGA-A6-6780-01	WDR81	ENST00000419248.1,ENST00000446363.1,ENST00000437219.2,ENST00000309182.5,ENST00000409644.1,ENST00000545662.1	chr17	1638865:1639011:1639332:1639512:1640658:1641448,	1639333	1639512	1639342	1639342	Nonsense_Mutation	C	T	p.R728X
COAD	TCGA-F4-6703-01	WNK1	ENST00000315939.6,ENST00000537687.1,ENST00000340908.4,ENST00000530271.2,ENST00000545055.1,ENST00000535572.1	chr12	991099:991239:992108:992225:992560:992585,	992109	992225	992127	992127	Nonsense_Mutation	C	T	p.R1391X
COAD	TCGA-CM-4750-01	WNT10B	ENST00000407467.1	chr12	49359338:49360336:49361728:49361789:49361931:49362102,	49361729	49361789	49361758	49361758	Nonsense_Mutation	G	A	p.R228X
COAD	TCGA-CM-4750-01	WNT10B	ENST00000301061.4	chr12	49359338:49360336:49361728:49362102:49363871:49364134,	49361729	49362102	49361758	49361758	Nonsense_Mutation	G	A	p.R228X
COAD	TCGA-G4-6315-01	WWOX	ENST00000408984.3,ENST00000539474.2,ENST00000355860.3,ENST00000402655.2,ENST00000406884.2,ENST00000561846.1,ENST00000562214.1,ENST00000565562.1	chr16	78133631:78133782:78142319:78142384:78143674:78143732,	78142320	78142384	78142372	78142372	Nonsense_Mutation	C	T	p.R54X
COAD	TCGA-CA-6718-01	WWOX	ENST00000408984.3,ENST00000566780.1,ENST00000569332.1	chr16	78148872:78149051:78198079:78198186:79245504:79246564,78148872:78149051:78198079:78198186:78420756:78420845,	78198080	78198186	78198181	78198181	Nonsense_Mutation	G	T	p.E171X
COAD	TCGA-D5-6533-01	XG	ENST00000426774.1,ENST00000419513.2,ENST00000381174.5	chrX	2692756:2692780:2700106:2700169:2707684:2707747,	2700107	2700169	2700142	2700142	Nonsense_Mutation	C	T	p.Q55X
COAD	TCGA-AZ-4315-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102211	168102211	Nonsense_Mutation	C	T	p.R1215X
COAD	TCGA-A6-6141-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103076	168103076	Nonsense_Mutation	C	A	p.S1503X
COAD	TCGA-D5-6928-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107293	168107293	Nonsense_Mutation	C	T	p.R2909X
COAD	TCGA-AA-3510-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107951	168107951	Nonsense_Mutation	C	A	p.S3128X
COAD	TCGA-AZ-4315-01	YEATS2	ENST00000305135.5	chr3	183436287:183436380:183439678:183439924:183442206:183442319,	183439679	183439924	183439910	183439910	Nonsense_Mutation	C	T	p.R175X
COAD	TCGA-AZ-4315-01	YIPF1	ENST00000371399.1,ENST00000469457.1,ENST00000072644.1,ENST00000465897.1,ENST00000480151.1,ENST00000464950.2,ENST00000412288.1,ENST00000539954.1	chr1	54332476:54332597:54337044:54337161:54343987:54344075,	54337045	54337161	54337057	54337057	Nonsense_Mutation	C	A	p.E157X
COAD	TCGA-D5-6540-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264719	75264719	Nonsense_Mutation	C	T	p.Q907X
COAD	TCGA-CA-6717-01	YTHDC2	ENST00000515883.1,ENST00000161863.4,ENST00000503857.1	chr5	112874770:112874878:112876664:112876813:112878064:112878200,	112876665	112876813	112876709	112876709	Nonsense_Mutation	G	T	p.E419X
COAD	TCGA-D5-6930-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069683	29069683	Nonsense_Mutation	C	T	p.Q251X
COAD	TCGA-CM-5348-01	ZAP70	ENST00000483781.1,ENST00000264972.5	chr2	98330378:98330457:98340478:98340901:98341554:98341705,	98340479	98340901	98340854	98340854	Nonsense_Mutation	C	T	p.R119X
COAD	TCGA-CA-6717-01	ZBBX	ENST00000307529.5,ENST00000455345.2,ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167016092:167016246:167023430:167023738:167031761:167031904,	167023431	167023738	167023649	167023649	Nonsense_Mutation	C	A	p.E503X
COAD	TCGA-D5-6540-01	ZC2HC1C	ENST00000439583.2	chr14	75536376:75536452:75537257:75538099:75544234:75544522,	75537258	75538099	75537302	75537302	Nonsense_Mutation	C	G	p.S9X
COAD	TCGA-D5-6540-01	ZC2HC1C	ENST00000238686.8	chr14	75536376:75536452:75537257:75538441:75544234:75544522,	75537258	75538441	75537302	75537302	Nonsense_Mutation	C	G	p.S9X
COAD	TCGA-D5-6540-01	ZC2HC1C	ENST00000524913.1	chr14	75536376:75536452:75537257:75538614:75544234:75544522,	75537258	75538614	75537302	75537302	Nonsense_Mutation	C	G	p.S9X
COAD	TCGA-F4-6856-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88665027:88665120:88666198:88666356:88675341:88675459,	88666199	88666356	88666204	88666204	Nonsense_Mutation	A	-	p.L312X
COAD	TCGA-CM-6674-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677775	88677775	Nonsense_Mutation	C	T	p.R436X
COAD	TCGA-CA-6718-01	ZC3H7A	ENST00000572870.1,ENST00000575170.1,ENST00000571198.1,ENST00000355758.4,ENST00000396516.2	chr16	11870613:11870765:11873021:11873219:11875280:11875320,	11873022	11873219	11873072	11873072	Nonsense_Mutation	C	A	p.E86X
COAD	TCGA-A6-6780-01	ZC3H8	ENST00000409573.2,ENST00000272570.5,ENST00000474234.1	chr2	112994162:112994272:112995891:112996105:113007767:113007849,	112995892	112996105	112995976	112995976	Nonsense_Mutation	G	A	p.Q96X
COAD	TCGA-G4-6323-01	ZCWPW2	ENST00000383768.2,ENST00000421010.1	chr3	28476714:28476760:28520304:28520422:28533617:28533664,	28520305	28520422	28520395	28520395	Nonsense_Mutation	G	T	p.E195X
COAD	TCGA-CA-6718-01	ZDHHC15	ENST00000373361.3,ENST00000373367.3,ENST00000541184.1	chrX	74598996:74599033:74636921:74637025:74641698:74641825,	74636922	74637025	74636958	74636958	Nonsense_Mutation	C	A	p.E302X
COAD	TCGA-A6-5665-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626245	82626245	Nonsense_Mutation	G	A	p.R130X
COAD	TCGA-D5-6929-01	ZIK1	ENST00000536878.2	chr19	58095627:58095980:58099906:58100033:58101378:58101566,58095627:58095757:58099906:58100033:58101378:58101566,	58099907	58100033	58099970	58099970	Nonsense_Mutation	G	T	p.E46X
COAD	TCGA-D5-6929-01	ZIK1	ENST00000598689.1	chr19	58095627:58095757:58099948:58100033:58101378:58101566,	58099949	58100033	58099970	58099970	Nonsense_Mutation	G	T	p.E46X
COAD	TCGA-G4-6588-01	ZMAT5	ENST00000397781.3,ENST00000344318.3	chr22	30134318:30134430:30136638:30136719:30138406:30138469,	30136639	30136719	30136672	30136672	Nonsense_Mutation	G	A	p.R80X
COAD	TCGA-CA-6718-01	ZMYM5	ENST00000535942.1	chr13	20409616:20409829:20411795:20411961:20412839:20413125,20409616:20409829:20411795:20411961:20425494:20425588,	20411796	20411961	20411900	20411900	Nonsense_Mutation	C	A	p.E312X
COAD	TCGA-CA-6717-01	ZNF143	ENST00000299606.2,ENST00000396604.1,ENST00000530463.1,ENST00000396597.3,ENST00000396602.2	chr11	9501018:9501093:9516192:9516312:9517849:9517925,	9516193	9516312	9516259	9516259	Nonsense_Mutation	C	T	p.R238X
COAD	TCGA-G4-6299-01	ZNF185	ENST00000324823.6	chrX	152089253:152089292:152090716:152090800:152100215:152100320,152089253:152089292:152090716:152090800:152097118:152097205,	152090717	152090800	152090757	152090757	Nonsense_Mutation	C	T	p.Q232X
COAD	TCGA-F4-6570-01	ZNF326	ENST00000370447.3	chr1	90470691:90470803:90473170:90473309:90475646:90475845,	90473171	90473309	90473298	90473298	Nonsense_Mutation	C	T	p.R202X
COAD	TCGA-F4-6570-01	ZNF326	ENST00000340281.4	chr1	90470691:90470803:90472903:90473309:90475646:90475845,	90472904	90473309	90473298	90473298	Nonsense_Mutation	C	T	p.R202X
COAD	TCGA-D5-6930-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90486350:90486481:90487808:90487904:90492912:90493375,	90487809	90487904	90487884	90487884	Nonsense_Mutation	C	T	p.R461X
COAD	TCGA-AD-6889-01	ZNF337	ENST00000481610.1,ENST00000376436.1,ENST00000252979.5	chr20	25657584:25657673:25666202:25666298:25666631:25666758,	25666203	25666298	25666239	25666239	Nonsense_Mutation	C	A	p.G72X
COAD	TCGA-AZ-4315-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438381	58438381	Nonsense_Mutation	G	A	p.R390X
COAD	TCGA-F4-6459-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22671913:22672045:22775123:22775208:22804308:22804753,	22775124	22775208	22775208	22775208	Nonsense_Mutation	T	A	p.K1192X
COAD	TCGA-CA-6717-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806606	22806606	Nonsense_Mutation	T	A	p.K426X
COAD	TCGA-CA-6718-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58117437	58117437	Nonsense_Mutation	G	T	p.G182X
COAD	TCGA-A6-5659-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58117659	58117659	Nonsense_Mutation	C	T	p.R256X
COAD	TCGA-AA-3510-01	ZNF532	ENST00000591083.1,ENST00000586158.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56601664:56601846:56606676:56606853:56615298:56615313,	56606677	56606853	56606846	56606846	Nonsense_Mutation	G	T	p.E900X
COAD	TCGA-AA-3510-01	ZNF532	ENST00000588956.1,ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000592249.1,ENST00000591230.1,ENST00000336078.4,ENST00000589131.1	chr18	56646286:56646399:56648701:56648849:56651203:56651326,	56648702	56648849	56648796	56648796	Nonsense_Mutation	G	T	p.E1120X
COAD	TCGA-AA-3492-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21299765	21299765	Nonsense_Mutation	A	-	p.Y98X
COAD	TCGA-AA-3510-01	ZNF717	ENST00000477374.1	chr3	75790760:75790887:75832456:75832515:75834534:75834718,	75832457	75832515	75832474	75832474	Nonsense_Mutation	C	A	p.E14X
COAD	TCGA-CM-5862-01	ZNF721	ENST00000506646.1	chr4	432372:432421:438131:438221:466363:466490,	438132	438221	438147	438147	Nonsense_Mutation	T	A	p.R37X
COAD	TCGA-AZ-4615-01	ZNHIT1	ENST00000492315.1,ENST00000305105.2,ENST00000461205.1,ENST00000485387.1	chr7	100865884:100866055:100866757:100866837:100866953:100867054,	100866758	100866837	100866778	100866778	Nonsense_Mutation	C	T	p.R72X
COAD	TCGA-G4-6628-01	ZNHIT1	ENST00000492315.1,ENST00000305105.2,ENST00000461205.1,ENST00000485387.1	chr7	100865884:100866055:100866757:100866837:100866953:100867054,	100866758	100866837	100866805	100866805	Nonsense_Mutation	C	T	p.R81X
COAD	TCGA-CM-6171-01	ZNRF3	ENST00000402174.1,ENST00000406323.3,ENST00000544604.2,ENST00000332811.4	chr22	29439286:29439418:29440767:29440878:29442703:29442871,	29440768	29440878	29440867	29440867	Nonsense_Mutation	C	T	p.R145X
COAD	TCGA-CA-6717-01	ZRANB2	ENST00000370920.3,ENST00000254821.6	chr1	71537803:71537938:71538154:71538231:71542477:71542560,	71538155	71538231	71538205	71538205	Nonsense_Mutation	C	A	p.E110X
COAD	TCGA-AA-3522-01	ABCG8	ENST00000272286.2	chr2	44073293:44073450:44078722:44078961:44079492:44079625,	44078723	44078961	44078890	44078890	Nonsense_Mutation	C	T	p.R164X
COAD	TCGA-AA-A00J-01	ACOT8	ENST00000217455.4,ENST00000484783.1,ENST00000487205.1,ENST00000461272.1	chr20	44472901:44473059:44477088:44477314:44485826:44485835,44472901:44473059:44477088:44477314:44483797:44483923,	44477089	44477314	44477303	44477304	Nonsense_Mutation	-	AATCA	p.L92_P93delinsX
COAD	TCGA-AA-3555-01	ACTR1B	ENST00000451664.1,ENST00000289228.5	chr2	98275857:98275940:98277033:98277109:98278344:98278409,	98277034	98277109	98277048	98277048	Nonsense_Mutation	C	A	p.G59X
COAD	TCGA-AA-3558-01	ACYP1	ENST00000555463.1	chr14	75528386:75528465:75530172:75530264:75530656:75530710,75519945:75520362:75530172:75530264:75535912:75536186,	75530173	75530264	75530247	75530247	Nonsense_Mutation	C	A	p.G4X
COAD	TCGA-A6-2676-01	ADAMTS10	ENST00000593913.1	chr19	8656841:8656987:8657646:8657754:8660656:8660787,	8657647	8657754	8657734	8657734	Nonsense_Mutation	C	T	p.W500X
COAD	TCGA-AA-A00E-01	ADCK1	ENST00000556560.1,ENST00000555217.1,ENST00000341211.5,ENST00000238561.5	chr14	78390799:78390949:78392106:78392304:78397860:78398054,	78392107	78392304	78392248	78392248	Nonsense_Mutation	C	T	p.R316X
COAD	TCGA-A6-2672-01	AHCYL2	ENST00000325006.3,ENST00000531335.2,ENST00000446544.2,ENST00000490911.1,ENST00000474594.1,ENST00000466924.1,ENST00000466993.1,ENST00000446212.1,ENST00000491079.1	chr7	129029474:129029575:129037062:129037165:129040130:129040161,	129037063	129037165	129037102	129037102	Nonsense_Mutation	C	T	p.R254X
COAD	TCGA-AA-3516-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829973	61829974	Nonsense_Mutation	-	A	p.D3556_S3557delinsX
COAD	TCGA-AA-3555-01	ANXA10	ENST00000359299.3,ENST00000507278.1	chr4	169100367:169100463:169102833:169102892:169105709:169105832,	169102834	169102892	169102845	169102845	Nonsense_Mutation	C	T	p.R246X
COAD	TCGA-AA-A00Z-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
COAD	TCGA-AA-3531-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128191	112128191	Nonsense_Mutation	C	T	p.R232X
COAD	TCGA-AA-3554-01	ARHGAP24	ENST00000514229.1	chr4	86749045:86749128:86844800:86844923:86863218:86863358,	86844801	86844923	86844920	86844920	Nonsense_Mutation	G	T	p.G130X
COAD	TCGA-AA-A00R-01	ARNTL2	ENST00000261178.5	chr12	27485987:27486036:27521194:27521345:27533179:27533337,	27521195	27521345	27521311	27521311	Nonsense_Mutation	C	T	p.R50X
COAD	TCGA-AA-A00J-01	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113490556:113490565:113496589:113496693:113505350:113505532,	113496590	113496693	113496637	113496637	Nonsense_Mutation	C	T	p.R585X
COAD	TCGA-AA-A00E-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50230215:50230371:50234028:50234093:50235200:50235345,	50234029	50234093	50234050	50234050	Nonsense_Mutation	G	T	p.C798X
COAD	TCGA-AA-3555-01	BCOR	ENST00000397354.3,ENST00000342274.4,ENST00000378444.4,ENST00000406200.2	chrX	39930225:39930412:39930889:39930943:39931601:39934433,	39930890	39930943	39930915	39930915	Nonsense_Mutation	A	C	p.L1009X
COAD	TCGA-AA-3525-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383560	203383560	Nonsense_Mutation	C	T	p.R213X
COAD	TCGA-AA-3554-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420138	203420138	Nonsense_Mutation	C	T	p.R584X
COAD	TCGA-AA-A00R-01	BRAP	ENST00000419234.4,ENST00000539060.1,ENST00000327551.6,ENST00000547043.1	chr12	112087742:112087846:112093369:112093459:112096539:112096649,	112093370	112093459	112093423	112093423	Nonsense_Mutation	G	A	p.R420X
COAD	TCGA-AA-3555-01	BTG3	ENST00000348354.6	chr21	18977177:18977315:18981289:18981470:18985016:18985162,	18981290	18981470	18981414	18981414	Nonsense_Mutation	G	A	p.R17X
COAD	TCGA-AA-3555-01	BTN3A1	ENST00000082468.7,ENST00000425234.2,ENST00000289361.6,ENST00000476549.2	chr6	26406136:26406484:26407898:26408180:26409760:26409961,	26407899	26408180	26407963	26407963	Nonsense_Mutation	C	A	p.C166X
COAD	TCGA-AA-3518-01	C20orf96	ENST00000360321.2	chr20	264603:264722:270199:270317:270899:270948,	270200	270317	270299	270299	Nonsense_Mutation	G	A	p.Q30X
COAD	TCGA-A6-2676-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000412148.1,ENST00000263630.8	chr2	55545978:55546140:55549663:55549828:55555429:55555532,	55549664	55549828	55549732	55549732	Nonsense_Mutation	G	A	p.R1031X
COAD	TCGA-AA-A00J-01	CD22	ENST00000419549.2,ENST00000085219.5,ENST00000536635.2,ENST00000594250.1,ENST00000341773.6,ENST00000601769.1	chr19	35835953:35836029:35836504:35836623:35837053:35837138,	35836505	35836623	35836616	35836616	Nonsense_Mutation	C	T	p.R597X
COAD	TCGA-A6-2676-01	CENPO	ENST00000491031.1,ENST00000380834.2,ENST00000486527.2,ENST00000260662.1	chr2	25016720:25016834:25022543:25022713:25037244:25037362,	25022544	25022713	25022672	25022672	Nonsense_Mutation	C	T	p.R53X
COAD	TCGA-A6-2672-01	CNOT7	ENST00000519954.1,ENST00000361272.4,ENST00000523917.1,ENST00000519918.1	chr8	17092309:17092369:17094720:17094882:17100500:17100694,	17094721	17094882	17094735	17094735	Nonsense_Mutation	C	T	p.W153X
COAD	TCGA-AA-3555-01	COL1A2	ENST00000297268.6	chr7	94056319:94056373:94056499:94056607:94056938:94057197,	94056500	94056607	94056578	94056578	Nonsense_Mutation	C	T	p.R1080X
COAD	TCGA-AA-3525-01	CSMD3	ENST00000343508.3,ENST00000297405.5,ENST00000339701.3,ENST00000352409.3	chr8	113314021:113314195:113316949:113317144:113318235:113318421,	113316950	113317144	113317111	113317111	Nonsense_Mutation	A	T	p.L2702X
COAD	TCGA-AA-3555-01	CUL2	ENST00000374742.1,ENST00000374746.1,ENST00000374754.4,ENST00000374748.1,ENST00000374749.3,ENST00000602371.1,ENST00000374751.3,ENST00000537177.1	chr10	35324099:35324224:35327847:35328010:35333493:35333604,	35327848	35328010	35327980	35327980	Nonsense_Mutation	G	A	p.R249X
COAD	TCGA-AA-3555-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634288	84634288	Nonsense_Mutation	C	A	p.S264X
COAD	TCGA-AA-A01G-01	DAB2	ENST00000320816.6	chr5	39381555:39381718:39382719:39383373:39388406:39388469,	39382720	39383373	39383090	39383090	Nonsense_Mutation	G	T	p.S324X
COAD	TCGA-AA-3555-01	DALRD3	ENST00000313778.5,ENST00000484831.1,ENST00000341949.4,ENST00000420952.2,ENST00000441576.2,ENST00000395462.4,ENST00000440857.1,ENST00000460505.1	chr3	49054866:49054946:49055045:49055302:49055455:49055466,	49055046	49055302	49055172	49055172	Nonsense_Mutation	C	A	p.E31X
COAD	TCGA-AA-3525-01	DHRS1	ENST00000559483.1,ENST00000288111.7,ENST00000561273.1,ENST00000558340.1,ENST00000396813.1	chr14	24765714:24765794:24765943:24766087:24768162:24768336,	24765944	24766087	24766024	24766024	Nonsense_Mutation	G	A	p.R72X
COAD	TCGA-AA-A01Q-01	DTL	ENST00000366991.4	chr1	212216334:212216460:212218001:212218100:212220492:212220554,	212218002	212218100	212218052	212218052	Nonsense_Mutation	C	T	p.R77X
COAD	TCGA-AA-3518-01	E2F7	ENST00000322886.7,ENST00000416496.2,ENST00000550669.1	chr12	77427785:77427822:77436844:77436979:77438416:77438575,	77436845	77436979	77436971	77436971	Nonsense_Mutation	G	A	p.R333X
COAD	TCGA-AA-A00J-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256510	19256510	Nonsense_Mutation	G	A	p.R183X
COAD	TCGA-A6-2676-01	ECT2	ENST00000441497.2,ENST00000428567.1,ENST00000540509.1,ENST00000392692.3,ENST00000417960.1,ENST00000232458.5,ENST00000427830.1	chr3	172476769:172476859:172477945:172478053:172479399:172479424,	172477946	172478053	172477988	172477988	Nonsense_Mutation	C	T	p.R176X
COAD	TCGA-AA-A01G-01	EDA2R	ENST00000456230.2,ENST00000396050.1,ENST00000253392.5,ENST00000374719.3,ENST00000450752.1	chrX	65822565:65822639:65824262:65824348:65824889:65825068,	65824263	65824348	65824341	65824341	Nonsense_Mutation	G	A	p.R92X
COAD	TCGA-AA-A00A-01	EDEM2	ENST00000374492.3,ENST00000374491.3,ENST00000540582.1	chr20	33719444:33719586:33722540:33722752:33725682:33725802,	33722541	33722752	33722565	33722565	Nonsense_Mutation	C	T	p.W226X
COAD	TCGA-AA-3554-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120820735:120820840:120824910:120825082:120828957:120829166,	120824911	120825082	120824934	120824934	Nonsense_Mutation	G	A	p.R367X
COAD	TCGA-AA-3543-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170626692	170626692	Nonsense_Mutation	C	T	p.R72X
COAD	TCGA-AA-3525-01	FBXO4	ENST00000281623.3	chr5	41934238:41934410:41939542:41939718:41941293:41941670,	41939543	41939718	41939553	41939553	Nonsense_Mutation	G	A	p.W303X
COAD	TCGA-AA-3561-01	FCRL4	ENST00000448509.2,ENST00000271532.1	chr1	157557065:157557350:157557654:157557909:157558993:157559041,	157557655	157557909	157557884	157557884	Nonsense_Mutation	A	C	p.Y111X
COAD	TCGA-AA-A00J-01	FYTTD1	ENST00000415708.2,ENST00000424384.2,ENST00000428395.2,ENST00000241502.4	chr3	197501019:197501081:197503797:197503872:197505208:197505335,	197503798	197503872	197503820	197503820	Nonsense_Mutation	G	T	p.G201X
COAD	TCGA-AA-3516-01	GAPVD1	ENST00000467750.1,ENST00000497580.1,ENST00000265956.4,ENST00000495955.1,ENST00000394084.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128061200:128061385:128064261:128065105:128067341:128067428,	128064262	128065105	128064536	128064536	Nonsense_Mutation	C	T	p.R154X
COAD	TCGA-A6-2678-01	GLCCI1	ENST00000223145.5	chr7	8110712:8110761:8124526:8124647:8125822:8125870,	8124527	8124647	8124622	8124622	Nonsense_Mutation	C	T	p.R425X
COAD	TCGA-A6-2683-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000561481.1,ENST00000447066.2	chr16	74497253:74497377:74499573:74499711:74501653:74501746,	74499574	74499711	74499607	74499607	Nonsense_Mutation	G	C	p.Y867X
COAD	TCGA-AA-A01Q-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000305960.9,ENST00000543237.1	chr14	67576856:67576976:67578577:67578636:67579734:67579888,	67578578	67578636	67578599	67578599	Nonsense_Mutation	C	T	p.R446X
COAD	TCGA-AA-3555-01	GPM6B	ENST00000493085.1,ENST00000454189.2,ENST00000356942.5,ENST00000398361.3,ENST00000316715.4,ENST00000468080.1,ENST00000493677.1,ENST00000355135.2	chrX	13798026:13798108:13801483:13801640:13803740:13803927,	13801484	13801640	13801537	13801537	Nonsense_Mutation	C	A	p.E158X
COAD	TCGA-AA-3542-01	GREB1	ENST00000263834.5	chr2	11679968:11680234:11696579:11696897:11702588:11702708,	11696580	11696897	11696755	11696755	Nonsense_Mutation	C	A	p.Y5X
COAD	TCGA-AA-3542-01	GREB1	ENST00000381483.2	chr2	11682850:11682943:11696582:11696897:11702588:11702708,	11696583	11696897	11696755	11696755	Nonsense_Mutation	C	A	p.Y5X
COAD	TCGA-AA-3555-01	GSTZ1	ENST00000556627.1,ENST00000553838.1,ENST00000349555.3,ENST00000553268.1,ENST00000553431.1,ENST00000554279.1	chr14	77790911:77790965:77791212:77791264:77793180:77793248,77788889:77789075:77791212:77791264:77793180:77793248,77787436:77787526:77791212:77791264:77793180:77793248,	77791213	77791264	77791258	77791258	Nonsense_Mutation	C	T	p.R21X
COAD	TCGA-AA-A00K-01	HCLS1	ENST00000495491.1,ENST00000314583.3,ENST00000481314.1,ENST00000428394.2,ENST00000487290.1	chr3	121366165:121366295:121376125:121376199:121377110:121377194,	121376126	121376199	121376175	121376175	Nonsense_Mutation	G	A	p.R37X
COAD	TCGA-AA-3555-01	HM13	ENST00000376127.3,ENST00000469126.1,ENST00000335574.5,ENST00000340852.5,ENST00000344042.5,ENST00000398174.3	chr20	30115286:30115385:30132749:30132838:30137866:30137924,30125981:30126162:30132749:30132838:30136831:30136917,30125997:30126064:30132749:30132838:30136831:30136917,	30132750	30132838	30132790	30132790	Nonsense_Mutation	C	T	p.R136X
COAD	TCGA-AA-A00U-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41800462:41800591:41807440:41807609:41808569:41808854,	41807441	41807609	41807468	41807468	Nonsense_Mutation	C	T	p.R416X
COAD	TCGA-A6-2676-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124153180:124153372:124157734:124157884:124160791:124160906,	124157735	124157884	124157798	124157798	Nonsense_Mutation	C	T	p.R1036X
COAD	TCGA-AA-A01Q-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727725	137727725	Nonsense_Mutation	C	T	p.R802X
COAD	TCGA-AA-3555-01	KIF18A	ENST00000533466.1,ENST00000263181.6	chr11	28106178:28106355:28110070:28110268:28112163:28112274,	28110071	28110268	28110259	28110259	Nonsense_Mutation	G	A	p.R237X
COAD	TCGA-A6-2676-01	KIF22	ENST00000400751.5,ENST00000569382.2,ENST00000400750.2,ENST00000561482.1,ENST00000160827.4	chr16	29809913:29810068:29810295:29810505:29810584:29810815,	29810296	29810505	29810338	29810338	Nonsense_Mutation	C	T	.
COAD	TCGA-A6-2676-01	LGMN	ENST00000334869.4,ENST00000393218.2,ENST00000556097.1,ENST00000555699.1,ENST00000557609.1,ENST00000557434.1	chr14	93179149:93179216:93180167:93180230:93180720:93180796,	93180168	93180230	93180173	93180173	Nonsense_Mutation	G	A	p.R180X
COAD	TCGA-AA-A00A-01	LIMCH1	ENST00000511496.1	chr4	41600936:41601043:41607910:41608021:41615482:41615551,	41607911	41608021	41608016	41608016	Nonsense_Mutation	C	T	p.R161X
COAD	TCGA-AA-3516-01	LOXL2	ENST00000389131.3	chr8	23198504:23198716:23217602:23217778:23225509:23225947,	23217603	23217778	23217750	23217750	Nonsense_Mutation	A	T	p.C128X
COAD	TCGA-AA-3554-01	LRRFIP2	ENST00000354379.4,ENST00000416425.1,ENST00000421276.2,ENST00000440230.1	chr3	37138106:37138151:37170553:37170640:37190384:37190529,	37170554	37170640	37170568	37170568	Nonsense_Mutation	G	A	p.R55X
COAD	TCGA-AA-3516-01	LSM14A	ENST00000540746.2,ENST00000433627.5	chr19	34710613:34710782:34712411:34712643:34718269:34718522,34710613:34710782:34712411:34712643:34717312:34717369,	34712412	34712643	34712512	34712512	Nonsense_Mutation	G	T	p.G413X
COAD	TCGA-AA-3555-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000311027.5,ENST00000395344.3,ENST00000402192.2	chr11	47346021:47346128:47348288:47348358:47350208:47350255,	47348289	47348358	47348331	47348331	Nonsense_Mutation	C	T	p.R1486X
COAD	TCGA-AA-A00W-01	MBTPS1	ENST00000343411.3	chr16	84129206:84129410:84132657:84132915:84135225:84135712,	84132658	84132915	84132811	84132811	Nonsense_Mutation	G	A	p.R90X
COAD	TCGA-AA-3555-01	MELK	ENST00000536860.1,ENST00000545008.1,ENST00000538311.1,ENST00000543751.1,ENST00000298048.2,ENST00000536987.1,ENST00000536329.1,ENST00000541717.1	chr9	36633098:36633197:36642993:36643080:36651742:36651874,	36642994	36643080	36643024	36643024	Nonsense_Mutation	G	T	p.E289X
COAD	TCGA-AA-A00J-01	MLF1	ENST00000478894.2,ENST00000482628.1,ENST00000355893.5,ENST00000469452.1,ENST00000471745.1,ENST00000359117.5,ENST00000484955.1,ENST00000392822.3,ENST00000497004.1,ENST00000491767.1	chr3	158317802:158317962:158320595:158320728:158322885:158322981,	158320596	158320728	158320712	158320712	Nonsense_Mutation	C	T	p.R219X
COAD	TCGA-A6-2676-01	MTMR11	ENST00000482343.1,ENST00000482025.1,ENST00000492824.1,ENST00000361405.6,ENST00000479272.1,ENST00000369140.3,ENST00000466496.1,ENST00000406732.3,ENST00000439741.2	chr1	149906340:149906419:149906878:149907021:149907191:149907252,	149906879	149907021	149906941	149906941	Nonsense_Mutation	G	A	p.R64X
COAD	TCGA-AA-A00K-01	NCAPD2	ENST00000382457.4,ENST00000545732.1,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6623638:6623753:6623938:6624086:6625993:6626037,	6623939	6624086	6623983	6623983	Nonsense_Mutation	C	G	p.S295X
COAD	TCGA-AA-3560-01	NME6	ENST00000450160.1,ENST00000451657.1,ENST00000435684.1	chr3	48336165:48336293:48336564:48336725:48337608:48337648,48336229:48336293:48336564:48336725:48338216:48338319,	48336565	48336725	48336643	48336643	Nonsense_Mutation	G	A	p.R114X
COAD	TCGA-A6-2676-01	NRG2	ENST00000340391.3,ENST00000361474.1	chr5	139244699:139244758:139245133:139245210:139251305:139251388,139235333:139235363:139245133:139245210:139251305:139251388,	139245134	139245210	139245161	139245161	Nonsense_Mutation	G	A	p.R388X
COAD	TCGA-AA-3543-01	NT5C2	ENST00000421281.1,ENST00000369857.4,ENST00000343289.5,ENST00000423468.2,ENST00000404739.3	chr10	104851320:104851372:104852895:104853066:104853728:104853795,	104852896	104853066	104852956	104852956	Nonsense_Mutation	G	A	p.R367X
COAD	TCGA-AA-A00J-01	ODC1	ENST00000234111.4,ENST00000405333.1	chr2	10583827:10583962:10584220:10584393:10584599:10584673,	10584221	10584393	10584375	10584375	Nonsense_Mutation	G	A	p.Q99X
COAD	TCGA-A6-2678-01	OPHN1	ENST00000355520.5,ENST00000484842.1	chrX	67273486:67273652:67292993:67293141:67316711:67316871,67283695:67284019:67292993:67293141:67316711:67316871,	67292994	67293141	67293120	67293120	Nonsense_Mutation	C	A	p.E570X
COAD	TCGA-A6-2672-01	ORC5	ENST00000422497.1,ENST00000297431.4,ENST00000545943.1,ENST00000447452.2	chr7	103808920:103808973:103824390:103824481:103824570:103824619,	103824391	103824481	103824453	103824453	Nonsense_Mutation	C	T	p.W254X
COAD	TCGA-AA-3516-01	PARVB	ENST00000338758.7,ENST00000406477.3,ENST00000444029.1,ENST00000404989.1	chr22	44514917:44515020:44527366:44527507:44528773:44528845,	44527367	44527507	44527477	44527477	Nonsense_Mutation	C	T	p.R196X
COAD	TCGA-AA-A01Q-01	PATE2	ENST00000358524.3	chr11	125647333:125647413:125647768:125647897:125648446:125648470,	125647769	125647897	125647872	125647872	Nonsense_Mutation	A	T	p.C34X
COAD	TCGA-AA-3516-01	PCIF1	ENST00000372409.3,ENST00000479348.1	chr20	44574687:44574754:44574838:44575023:44575711:44575805,	44574839	44575023	44574917	44574917	Nonsense_Mutation	C	T	p.R503X
COAD	TCGA-AA-3555-01	PCK2	ENST00000560106.1,ENST00000559250.1,ENST00000560736.1,ENST00000559837.1,ENST00000561050.1,ENST00000396973.4,ENST00000545054.2,ENST00000558096.1,ENST00000216780.4	chr14	24566100:24566346:24567411:24567596:24567683:24567800,	24567412	24567596	24567560	24567560	Nonsense_Mutation	C	T	p.R142X
COAD	TCGA-AA-3516-01	PDAP1	ENST00000426447.1,ENST00000350498.3	chr7	98994145:98994363:98995484:98995636:98997925:98998047,	98995485	98995636	98995497	98995497	Nonsense_Mutation	C	A	p.E159X
COAD	TCGA-AA-A00J-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087578	32087578	Nonsense_Mutation	G	T	p.G1342X
COAD	TCGA-A6-2678-01	PHTF1	ENST00000369598.1,ENST00000369600.1,ENST00000474926.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000369596.2,ENST00000481652.1	chr1	114246702:114246789:114247287:114247419:114248511:114248603,	114247288	114247419	114247312	114247312	Nonsense_Mutation	C	T	p.W593X
COAD	TCGA-AA-3560-01	PIK3AP1	ENST00000371110.2,ENST00000468783.1,ENST00000339364.5	chr10	98411265:98411408:98412454:98412599:98416554:98416691,	98412455	98412599	98412536	98412536	Nonsense_Mutation	C	A	p.E211X
COAD	TCGA-AA-3516-01	POLR3A	ENST00000473588.2	chr10	79767459:79767624:79769621:79769749:79770228:79770298,	79769622	79769749	79769711	79769711	Nonsense_Mutation	G	A	p.R561X
COAD	TCGA-AA-3552-01	PPM1F	ENST00000397495.4,ENST00000263212.5	chr22	22288395:22288598:22293903:22294052:22300214:22300480,	22293904	22294052	22294003	22294003	Nonsense_Mutation	G	A	p.Q86X
COAD	TCGA-AA-3555-01	PPP3CC	ENST00000289963.8,ENST00000240139.5,ENST00000397775.3,ENST00000521651.1,ENST00000518852.1	chr8	22333104:22333137:22368598:22368744:22370805:22370945,22355513:22355625:22368598:22368744:22370805:22370945,	22368599	22368744	22368601	22368601	Nonsense_Mutation	C	T	p.R163X
COAD	TCGA-AA-A00J-01	PRC1	ENST00000560914.1,ENST00000394249.3,ENST00000442656.2,ENST00000361188.5,ENST00000559828.1,ENST00000361919.3	chr15	91517814:91517961:91519905:91520001:91522387:91522524,	91519906	91520001	91519980	91519980	Nonsense_Mutation	G	A	p.R377X
COAD	TCGA-AA-A00K-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108531	14108531	Nonsense_Mutation	C	A	p.S1213X
COAD	TCGA-A6-2683-01	PRRG4	ENST00000257836.3	chr11	32852053:32852178:32858203:32858367:32860427:32860476,	32858204	32858367	32858356	32858356	Nonsense_Mutation	G	T	p.E86X
COAD	TCGA-AA-3542-01	PSME3	ENST00000589469.1	chr17	40989665:40989714:40990109:40990222:40990747:40990815,40989665:40989714:40990109:40990222:40990961:40990993,	40990110	40990222	40990154	40990154	Nonsense_Mutation	C	T	p.Q113X
COAD	TCGA-AA-3522-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114345831:114345869:114348277:114348445:114355205:114355262,	114348278	114348445	114348382	114348382	Nonsense_Mutation	C	T	p.W91X
COAD	TCGA-AA-A00J-01	PUM2	ENST00000319801.5,ENST00000440577.1	chr2	20460097:20460227:20462953:20463221:20478343:20478580,20460097:20460227:20462953:20463221:20482707:20482992,	20462954	20463221	20463198	20463198	Nonsense_Mutation	G	A	p.R661X
COAD	TCGA-AA-A00J-01	RARB	ENST00000480001.1	chr3	25622036:25622213:25636010:25636169:25637910:25637946,	25636011	25636169	25636097	25636097	Nonsense_Mutation	C	T	p.R360X
COAD	TCGA-AA-3518-01	RFX5	ENST00000290524.4,ENST00000368870.2,ENST00000452513.2,ENST00000392746.3,ENST00000452671.2,ENST00000436637.1	chr1	151315817:151315918:151316156:151316358:151316672:151316754,	151316157	151316358	151316199	151316199	Nonsense_Mutation	G	A	p.R239X
COAD	TCGA-AA-3543-01	RNF17	ENST00000418120.1,ENST00000381921.1,ENST00000255324.5,ENST00000339524.3	chr13	25418016:25418109:25418789:25418940:25419098:25419217,	25418790	25418940	25418896	25418896	Nonsense_Mutation	C	T	p.R980X
COAD	TCGA-AA-A01Q-01	RNPEP	ENST00000367286.3,ENST00000295640.4,ENST00000479531.1,ENST00000471105.1	chr1	201970786:201970895:201972364:201972589:201973481:201973624,	201972365	201972589	201972384	201972384	Nonsense_Mutation	G	A	p.W482X
COAD	TCGA-AA-3514-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253659	55253659	Nonsense_Mutation	C	A	p.E526X
COAD	TCGA-AA-A00R-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55254061	55254061	Nonsense_Mutation	G	A	p.R392X
COAD	TCGA-AA-A00F-01	SESN3	ENST00000393234.1,ENST00000536441.1,ENST00000416495.2	chr11	94918419:94918656:94922942:94923125:94924567:94924765,	94922943	94923125	94923113	94923114	Nonsense_Mutation	-	TCTA	p.H119_Q120delinsX
COAD	TCGA-AA-3525-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098427	47098427	Nonsense_Mutation	G	A	p.Q2283X
COAD	TCGA-AA-A00D-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923106	150923106	Nonsense_Mutation	C	T	p.R585X
COAD	TCGA-AA-3555-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75664322:75664550:75668005:75668213:75672969:75673064,	75668006	75668213	75668179	75668179	Nonsense_Mutation	G	A	p.R1140X
COAD	TCGA-AA-3525-01	SLC22A8	ENST00000336232.2	chr11	62768191:62768295:62782097:62782455:62783200:62783282,	62782098	62782455	62782319	62782319	Nonsense_Mutation	G	A	p.Q38X
COAD	TCGA-AA-3525-01	SLC22A8	ENST00000430500.2	chr11	62768191:62768295:62782097:62782434:62783200:62783282,	62782098	62782434	62782319	62782319	Nonsense_Mutation	G	A	p.Q38X
COAD	TCGA-A6-2672-01	SORBS1	ENST00000361941.3,ENST00000371247.2	chr10	97082502:97082562:97096277:97097051:97098889:97099084,97081719:97081778:97096277:97097051:97098889:97099084,	97096278	97097051	97096778	97096778	Nonsense_Mutation	G	A	p.R1047X
COAD	TCGA-AA-3525-01	SRBD1	ENST00000493649.1,ENST00000535761.1,ENST00000263736.4	chr2	45773870:45773978:45774660:45774751:45778263:45778421,	45774661	45774751	45774701	45774701	Nonsense_Mutation	G	A	p.R576X
COAD	TCGA-AA-A01Q-01	STT3A	ENST00000531491.1,ENST00000529196.1,ENST00000392708.4	chr11	125482883:125483072:125483981:125484098:125484218:125484321,	125483982	125484098	125484067	125484067	Nonsense_Mutation	G	A	p.W547X
COAD	TCGA-AA-3555-01	SUCLA2	ENST00000434484.1,ENST00000497202.1,ENST00000544100.1,ENST00000543413.1,ENST00000378654.3,ENST00000534875.1	chr13	48542762:48542868:48547398:48547527:48562675:48562838,	48547399	48547527	48547446	48547446	Nonsense_Mutation	C	A	p.E206X
COAD	TCGA-A6-2676-01	SUPT4H1	ENST00000580947.1,ENST00000579289.1,ENST00000581540.1,ENST00000577396.1,ENST00000225504.3	chr17	56424560:56424602:56424889:56424945:56428762:56428862,	56424890	56424945	56424896	56424896	Nonsense_Mutation	G	A	p.R76X
COAD	TCGA-AA-3555-01	TASP1	ENST00000337743.4,ENST00000480436.1,ENST00000465381.1	chr20	13561543:13561628:13567896:13568017:13604092:13604161,	13567897	13568017	13567966	13567966	Nonsense_Mutation	C	A	p.E112X
COAD	TCGA-AA-A00E-01	TBC1D5	ENST00000429383.4,ENST00000253692.7,ENST00000414318.2	chr3	17255698:17255862:17279654:17279911:17299997:17300083,	17279655	17279911	17279703	17279703	Nonsense_Mutation	G	A	p.Q514X
COAD	TCGA-AA-3525-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103154	61103154	Nonsense_Mutation	C	T	p.R506X
COAD	TCGA-A6-2676-01	TEK	ENST00000380036.4	chr9	27173219:27173360:27180237:27180366:27183456:27183608,	27180238	27180366	27180341	27180341	Nonsense_Mutation	G	A	p.W335X
COAD	TCGA-A6-2676-01	TFEB	ENST00000406563.2,ENST00000230323.4,ENST00000358871.2,ENST00000420312.1,ENST00000403298.4,ENST00000343317.6,ENST00000373033.1	chr6	41653827:41653975:41654831:41654907:41655490:41655547,	41654832	41654907	41654896	41654896	Nonsense_Mutation	G	A	p.R247X
COAD	TCGA-AA-A00J-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242572692	242572692	Nonsense_Mutation	G	A	p.Q294X
COAD	TCGA-AA-3518-01	TMPRSS15	ENST00000284885.3	chr21	19685261:19685394:19687462:19687573:19698748:19698889,	19687463	19687573	19687475	19687475	Nonsense_Mutation	C	A	p.E674X
COAD	TCGA-AA-3555-01	TMX3	ENST00000443099.2	chr18	66367641:66367722:66368981:66369027:66377257:66377381,66365168:66365268:66368981:66369027:66377257:66377381,	66368982	66369027	66369004	66369004	Nonsense_Mutation	G	A	p.R97X
COAD	TCGA-AA-3524-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
COAD	TCGA-AA-3553-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
COAD	TCGA-AA-A00D-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
COAD	TCGA-A6-2683-01	TRIM44	ENST00000299413.5	chr11	35706806:35706884:35747471:35747711:35756973:35756993,	35747472	35747711	35747697	35747697	Nonsense_Mutation	G	T	p.E325X
COAD	TCGA-A6-2672-01	TTC21B	ENST00000464374.1,ENST00000243344.7	chr2	166786159:166786257:166786681:166786874:166788267:166788366,	166786682	166786874	166786757	166786757	Nonsense_Mutation	C	A	p.G338X
COAD	TCGA-AA-A00U-01	TTC27	ENST00000317907.4	chr2	33036090:33036288:33037570:33037682:33042523:33042624,	33037571	33037682	33037597	33037597	Nonsense_Mutation	C	A	p.Y691X
COAD	TCGA-AA-3554-01	TTC33	ENST00000511730.2	chr5	40730363:40730445:40746899:40747121:40755925:40756047,	40746900	40747121	40746925	40746925	Nonsense_Mutation	C	A	p.G66X
COAD	TCGA-AA-3518-01	TUSC3	ENST00000509380.1,ENST00000507400.1,ENST00000515859.1,ENST00000510836.1,ENST00000506802.1,ENST00000511783.2,ENST00000382020.4,ENST00000503731.1	chr8	15480588:15480758:15508205:15508323:15517015:15517156,	15508206	15508323	15508207	15508207	Nonsense_Mutation	C	T	p.Q104X
COAD	TCGA-AA-A01F-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103299732:103299792:103300382:103300494:103301680:103301804,	103300383	103300494	103300407	103300407	Nonsense_Mutation	G	A	p.Q1601X
COAD	TCGA-AA-3555-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057115	115057115	Nonsense_Mutation	C	T	p.R199X
COAD	TCGA-AA-3519-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835287	82835287	Nonsense_Mutation	T	G	p.Y1168X
COAD	TCGA-AA-3555-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835327	82835327	Nonsense_Mutation	G	T	p.E1182X
COAD	TCGA-AA-A01Q-01	VGLL1	ENST00000440515.1	chrX	135618353:135618393:135630747:135631026:135632926:135632980,	135630748	135631026	135630958	135630958	Nonsense_Mutation	T	A	p.L142X
COAD	TCGA-AA-A01Q-01	VGLL1	ENST00000370634.3	chrX	135618353:135618393:135630747:135631167:135632926:135632980,	135630748	135631167	135630958	135630958	Nonsense_Mutation	T	A	p.L142X
COAD	TCGA-AA-3555-01	VPS53	ENST00000291074.5	chr17	556565:556650:559077:559193:565048:565135,556565:556650:559077:559193:600657:600724,	559078	559193	559187	559187	Nonsense_Mutation	C	A	p.E127X
COAD	TCGA-A6-2676-01	WASF2	ENST00000536657.1	chr1	27745454:27745589:27755270:27755443:27816496:27816562,	27755271	27755443	27755289	27755289	Nonsense_Mutation	G	A	p.R38X
COAD	TCGA-AA-3543-01	YIPF1	ENST00000371399.1,ENST00000072644.1,ENST00000464950.2,ENST00000539954.1	chr1	54325728:54325826:54331872:54332055:54332430:54332597,	54331873	54332055	54331941	54331941	Nonsense_Mutation	G	A	p.R255X
COAD	TCGA-AA-3561-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806393	22806393	Nonsense_Mutation	G	A	p.R497X
COAD	TCGA-AA-3525-01	ZNF560	ENST00000301480.4	chr19	9583854:9583935:9584874:9585001:9585959:9586045,	9584875	9585001	9584952	9584952	Nonsense_Mutation	C	T	p.W27X
COAD	TCGA-AA-A00E-01	ZNF827	ENST00000379448.4,ENST00000508784.1,ENST00000513320.1	chr4	146696940:146697112:146700525:146700663:146744573:146744677,	146700526	146700663	146700559	146700559	Nonsense_Mutation	G	A	p.Q830X
ESCA	TCGA-L5-A4OP-01	PPP1R13B	ENST00000202556.9,ENST00000554136.1,ENST00000557082.1,ENST00000555734.1	chr14	104245091:104245158:104251131:104251251:104263707:104263855,	104251132	104251251	104251168	104251168	Nonsense_Mutation	G	A	p.R81X
ESCA	TCGA-R6-A6L6-01	PQLC1	ENST00000357575.4	chr18	77664140:77664183:77679183:77679400:77693968:77694016,77664140:77664183:77679183:77679400:77690227:77690311,77664140:77664183:77679183:77679400:77703328:77703462,	77679184	77679400	77679354	77679354	Nonsense_Mutation	G	T	p.Y146X
ESCA	TCGA-R6-A6L6-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057296	30057296	Nonsense_Mutation	G	T	p.E260X
ESCA	TCGA-R6-A6L6-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596775	136596775	Nonsense_Mutation	G	A	p.Q583X
ESCA	TCGA-R6-A6L6-01	PHF8	ENST00000338154.6,ENST00000357988.5,ENST00000396282.2,ENST00000322659.8,ENST00000338946.6	chrX	54037554:54037717:54040809:54040996:54043027:54043169,	54040810	54040996	54040952	54040952	Nonsense_Mutation	G	T	p.S250X
ESCA	TCGA-R6-A6L6-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450533	55450533	Nonsense_Mutation	G	A	p.Q552X
ESCA	TCGA-R6-A6L6-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16149948:16150152:16162012:16162159:16165498:16165586,	16162013	16162159	16162052	16162052	Nonsense_Mutation	G	T	p.E573X
ESCA	TCGA-V5-AASX-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186094735:186094926:186097209:186097423:186099097:186099232,	186097210	186097423	186097328	186097328	Nonsense_Mutation	C	A	p.S4270X
ESCA	TCGA-V5-AASX-01	CPB1	ENST00000468341.1,ENST00000282957.4,ENST00000491148.1,ENST00000462345.1,ENST00000465718.1	chr3	148545788:148545864:148552284:148552409:148558472:148558498,	148552285	148552409	148552396	148552396	Nonsense_Mutation	G	T	p.E87X
ESCA	TCGA-V5-AASX-01	SYT16	ENST00000446982.2,ENST00000555409.1,ENST00000430451.2	chr14	62462593:62463260:62536320:62536533:62541852:62542109,	62536321	62536533	62536530	62536530	Nonsense_Mutation	G	T	p.E245X
ESCA	TCGA-V5-AASX-01	RPL36	ENST00000577222.1,ENST00000579649.1,ENST00000394580.2,ENST00000347512.3	chr19	5690516:5690611:5691329:5691464:5691542:5691555,	5691330	5691464	5691411	5691411	Nonsense_Mutation	G	T	p.E59X
ESCA	TCGA-V5-AASX-01	LZTS2	ENST00000370223.3,ENST00000370220.1	chr10	102762555:102762703:102763263:102763923:102765214:102765472,	102763264	102763923	102763855	102763855	Nonsense_Mutation	C	T	p.R334X
ESCA	TCGA-VR-AA4D-01	NR3C2	ENST00000355292.3,ENST00000503313.1,ENST00000511528.1,ENST00000344721.4,ENST00000358102.3	chr4	149073619:149073764:149075701:149076052:149115896:149116013,	149075702	149076052	149075875	149075875	Nonsense_Mutation	G	T	p.S731X
ESCA	TCGA-VR-AA4D-01	MCM3	ENST00000596288.1,ENST00000419835.2,ENST00000421471.1,ENST00000229854.7	chr6	52137098:52137249:52138027:52138154:52138539:52138573,	52138028	52138154	52138086	52138086	Nonsense_Mutation	G	A	p.Q585X
ESCA	TCGA-L5-A4OW-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736090	4736090	Nonsense_Mutation	G	A	p.Q660X
ESCA	TCGA-Z6-A9VB-01	RAP1GDS1	ENST00000514122.1,ENST00000408927.3,ENST00000505378.1,ENST00000510870.1,ENST00000511379.1,ENST00000408900.3	chr4	99182668:99182720:99214558:99214666:99264289:99264412,	99214559	99214666	99214624	99214624	Nonsense_Mutation	G	T	p.E25X
ESCA	TCGA-Z6-A9VB-01	RAP1GDS1	ENST00000264572.7,ENST00000380158.4,ENST00000515187.1,ENST00000453712.2,ENST00000339360.5,ENST00000507303.1,ENST00000511212.1,ENST00000512857.1	chr4	99182668:99182720:99214555:99214666:99264289:99264412,	99214556	99214666	99214624	99214624	Nonsense_Mutation	G	T	p.E25X
ESCA	TCGA-2H-A9GJ-01	CCDC92	ENST00000545135.1,ENST00000539761.1,ENST00000545891.1,ENST00000535556.1,ENST00000238156.3,ENST00000539551.1	chr12	124422311:124422377:124427290:124427332:124427893:124428040,	124427291	124427332	124427302	124427302	Nonsense_Mutation	G	T	p.S71X
ESCA	TCGA-2H-A9GJ-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38418776:38418893:38420741:38421398:38430041:38430251,	38420742	38421398	38421089	38421089	Nonsense_Mutation	C	T	p.R221X
ESCA	TCGA-VR-A8EX-01	CNOT8	ENST00000517568.1,ENST00000403027.2,ENST00000520472.1,ENST00000517876.1,ENST00000285896.6,ENST00000519211.1	chr5	154238211:154238328:154244751:154244945:154251289:154251341,154238211:154238328:154244751:154244945:154250220:154250264,154242771:154242955:154244751:154244945:154251289:154251341,154242771:154242955:154244751:154244945:154250220:154250264,	154244752	154244945	154244791	154244791	Nonsense_Mutation	G	T	p.E53X
ESCA	TCGA-VR-A8EX-01	ZFYVE26	ENST00000555452.1,ENST00000554557.1,ENST00000347230.4,ENST00000394455.2	chr14	68228082:68228301:68228919:68229129:68229388:68229536,	68228920	68229129	68228958	68228958	Nonsense_Mutation	C	A	p.E2111X
ESCA	TCGA-VR-A8EX-01	DMRT1	ENST00000382276.3,ENST00000569227.1	chr9	893911:894195:916762:916907:967984:968515,	916763	916907	916804	916804	Nonsense_Mutation	C	A	p.Y288X
ESCA	TCGA-VR-A8EX-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574000	7574000	Nonsense_Mutation	C	A	p.E343X
ESCA	TCGA-XP-A8T6-01	MYOT	ENST00000511254.1	chr5	137216504:137216554:137219072:137219280:137221736:137221793,	137219073	137219280	137219244	137219244	Nonsense_Mutation	G	T	p.G330X
ESCA	TCGA-XP-A8T6-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
ESCA	TCGA-XP-A8T6-01	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170591806	170591806	Nonsense_Mutation	T	A	p.Y94X
ESCA	TCGA-2H-A9GN-01	HPS3	ENST00000460120.1,ENST00000296051.2	chr3	148876452:148876633:148877832:148878066:148879934:148880120,	148877833	148878066	148877872	148877872	Nonsense_Mutation	G	T	p.E638X
ESCA	TCGA-2H-A9GN-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000562408.1	chr16	28124224:28124371:28132990:28133083:28137009:28137169,28128638:28128783:28132990:28133083:28137009:28137169,	28132991	28133083	28133018	28133018	Nonsense_Mutation	G	T	p.S611X
ESCA	TCGA-IC-A6RE-01	SLC44A3	ENST00000422520.2	chr1	95285956:95286034:95286504:95286612:95290048:95290191,95286205:95286279:95286504:95286612:95290048:95290191,	95286505	95286612	95286603	95286603	Nonsense_Mutation	G	A	p.W42X
ESCA	TCGA-IC-A6RE-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728751	100728751	Nonsense_Mutation	G	T	p.G264X
ESCA	TCGA-IC-A6RE-01	HERC1	ENST00000443617.2,ENST00000561400.1	chr15	64004973:64005094:64005551:64005864:64008500:64008672,	64005552	64005864	64005604	64005604	Nonsense_Mutation	G	A	p.Q1471X
ESCA	TCGA-IC-A6RE-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545499	196545499	Nonsense_Mutation	G	T	p.E245X
ESCA	TCGA-IC-A6RE-01	FAM131A	ENST00000450976.1	chr3	184055098:184055159:184056174:184056317:184059511:184059605,	184056175	184056317	184056194	184056194	Nonsense_Mutation	G	A	p.W36X
ESCA	TCGA-IC-A6RE-01	FANCM	ENST00000267430.5,ENST00000556036.1,ENST00000542564.2	chr14	45624575:45624662:45628298:45628483:45633561:45633768,	45628299	45628483	45628400	45628400	Nonsense_Mutation	C	T	p.Q500X
ESCA	TCGA-IC-A6RE-01	WDR47	ENST00000369965.4,ENST00000369962.3	chr1	109560139:109560223:109565976:109566143:109584483:109584608,	109565977	109566143	109566104	109566104	Nonsense_Mutation	C	A	p.E11X
ESCA	TCGA-IC-A6RE-01	NOP16	ENST00000389158.5,ENST00000503849.1,ENST00000510123.1,ENST00000509257.1	chr5	175812221:175812328:175813840:175813910:175815235:175815344,	175813841	175813910	175813851	175813851	Nonsense_Mutation	A	T	p.Y92X
ESCA	TCGA-IC-A6RE-01	NOP16	ENST00000504821.1	chr5	175812221:175812328:175813840:175813927:175815235:175815344,	175813841	175813927	175813851	175813851	Nonsense_Mutation	A	T	p.Y92X
ESCA	TCGA-IC-A6RE-01	NOP16	ENST00000502663.1	chr5	175812221:175812328:175813840:175813944:175815235:175815344,	175813841	175813944	175813851	175813851	Nonsense_Mutation	A	T	p.Y92X
ESCA	TCGA-IC-A6RE-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2,ENST00000549875.1	chr12	112318250:112318331:112321384:112321572:112323719:112323840,	112321385	112321572	112321523	112321523	Nonsense_Mutation	G	T	p.E267X
ESCA	TCGA-IC-A6RE-01	TRIM5	ENST00000483835.1	chr11	5685317:5685403:5686398:5686625:5686885:5686912,	5686399	5686625	5686527	5686527	Nonsense_Mutation	G	A	p.R332X
ESCA	TCGA-IC-A6RE-01	ERLEC1	ENST00000378239.5	chr2	54035435:54035597:54036350:54036410:54040085:54040210,54028849:54028979:54036350:54036410:54040085:54040210,	54036351	54036410	54036372	54036372	Nonsense_Mutation	G	T	p.E355X
ESCA	TCGA-IC-A6RE-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8751710	8751710	Nonsense_Mutation	G	T	p.S376X
ESCA	TCGA-IC-A6RE-01	SLC25A25	ENST00000373069.5,ENST00000373066.5	chr9	130863587:130863675:130864358:130864394:130864648:130864760,	130864359	130864394	130864363	130864363	Nonsense_Mutation	C	T	p.R147X
ESCA	TCGA-IC-A6RE-01	PSMA3	ENST00000557087.1,ENST00000555931.1,ENST00000557508.1,ENST00000554812.1,ENST00000555743.1,ENST00000216455.4,ENST00000412908.2	chr14	58727686:58727738:58730422:58730488:58734191:58734222,	58730423	58730488	58730477	58730477	Nonsense_Mutation	G	T	p.E178X
ESCA	TCGA-LN-A4A4-01	PDE8B	ENST00000340978.3,ENST00000342343.4,ENST00000346042.3,ENST00000264917.5	chr5	76703205:76703282:76704717:76704882:76707500:76707546,	76704718	76704882	76704797	76704797	Nonsense_Mutation	T	A	p.L482X
ESCA	TCGA-LN-A4A4-01	IRAK3	ENST00000261233.4,ENST00000457197.2	chr12	66610950:66611015:66620502:66620617:66622031:66622150,	66620503	66620617	66620609	66620609	Nonsense_Mutation	C	T	p.Q254X
ESCA	TCGA-IG-A5B8-01	KIF20B	ENST00000260753.4,ENST00000394289.2,ENST00000478929.1,ENST00000371728.3	chr10	91488884:91489004:91492659:91492813:91497143:91498374,	91492660	91492813	91492754	91492754	Nonsense_Mutation	C	G	p.S789X
ESCA	TCGA-IG-A5B8-01	ACD	ENST00000393919.4,ENST00000602320.1,ENST00000219251.8,ENST00000602945.1,ENST00000602850.1	chr16	67692830:67692982:67693131:67693166:67693277:67693322,	67693132	67693166	67693165	67693165	Nonsense_Mutation	C	A	p.E240X
ESCA	TCGA-IG-A5B8-01	TAF1B	ENST00000396242.3,ENST00000434858.1	chr2	9994454:9994550:10008404:10008558:10015993:10016147,9994454:9994550:10008404:10008558:10022834:10022934,	10008405	10008558	10008430	10008430	Nonsense_Mutation	C	G	p.S142X
ESCA	TCGA-IG-A5B8-01	CDC27	ENST00000573550.1	chr17	45232120:45232152:45234278:45234349:45234595:45234633,	45234279	45234349	45234325	45234325	Nonsense_Mutation	G	A	p.R266X
ESCA	TCGA-IG-A5B8-01	CDC27	ENST00000570818.1,ENST00000066544.3,ENST00000526866.1,ENST00000527547.1,ENST00000533415.1,ENST00000525495.2,ENST00000446365.2,ENST00000531206.1	chr17	45232120:45232152:45234278:45234490:45234595:45234633,	45234279	45234490	45234325	45234325	Nonsense_Mutation	G	A	p.R266X
ESCA	TCGA-IG-A5B8-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527461	29527461	Nonsense_Mutation	C	T	p.R304X
ESCA	TCGA-LN-A4A3-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294X
ESCA	TCGA-LN-A4A3-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49191053:49191191:49194956:49195166:49195704:49195866,	49194957	49195166	49195059	49195059	Nonsense_Mutation	C	T	p.R199X
ESCA	TCGA-LN-A4A3-01	ATRNL1	ENST00000355044.3	chr10	117061482:117061553:117075027:117075246:117093791:117093929,	117075028	117075246	117075177	117075177	Nonsense_Mutation	G	T	p.E990X
ESCA	TCGA-LN-A4A3-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749416	196749416	Nonsense_Mutation	G	A	p.R1886X
ESCA	TCGA-VR-A8EZ-01	COL18A1	ENST00000359759.4,ENST00000459895.1,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46913414:46913489:46914458:46914485:46914775:46914828,	46914459	46914485	46914474	46914474	Nonsense_Mutation	C	T	p.R970X
ESCA	TCGA-VR-A8EZ-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646173	215646173	Nonsense_Mutation	G	T	p.S142X
ESCA	TCGA-VR-A8EZ-01	CCDC88A	ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55528341:55528413:55529007:55529208:55535944:55536159,	55529008	55529208	55529026	55529026	Nonsense_Mutation	G	A	p.Q1551X
ESCA	TCGA-VR-A8EZ-01	RPN1	ENST00000296255.3,ENST00000497289.1	chr3	128339001:128339436:128341006:128341252:128344376:128344496,	128341007	128341252	128341048	128341048	Nonsense_Mutation	G	A	p.Q534X
ESCA	TCGA-VR-A8EZ-01	MAP3K1	ENST00000399503.3	chr5	56161166:56161283:56161655:56161804:56167736:56167858,	56161656	56161804	56161771	56161771	Nonsense_Mutation	C	A	p.S423X
ESCA	TCGA-VR-A8EZ-01	PIK3CD	ENST00000536656.1,ENST00000377346.4,ENST00000361110.2	chr1	9783182:9783350:9784026:9784150:9784333:9784463,	9784027	9784150	9784049	9784049	Nonsense_Mutation	G	T	p.E873X
ESCA	TCGA-L5-A43J-01	PHTF2	ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000416283.2	chr7	77569515:77569619:77569844:77569976:77572016:77572103,	77569845	77569976	77569845	77569845	Nonsense_Mutation	C	T	p.R547X
ESCA	TCGA-L5-A43J-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074772	31074772	Nonsense_Mutation	A	T	p.K358X
ESCA	TCGA-L5-A43J-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481423	140481423	Nonsense_Mutation	G	A	p.Q119X
ESCA	TCGA-L5-A43J-01	TCHP	ENST00000549550.1,ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110348867:110349040:110350795:110350877:110352246:110352333,	110350796	110350877	110350842	110350842	Nonsense_Mutation	C	T	p.R367X
ESCA	TCGA-L5-A43J-01	CCDC38	ENST00000549876.1,ENST00000344280.3	chr12	96266139:96266238:96271988:96272124:96273421:96273449,	96271989	96272124	96271999	96271999	Nonsense_Mutation	G	T	p.S423X
ESCA	TCGA-ZR-A9CJ-01	CHD6	ENST00000470470.1,ENST00000373233.3,ENST00000309279.7,ENST00000373222.3	chr20	40127934:40127997:40141484:40141634:40143443:40143591,	40141485	40141634	40141513	40141513	Nonsense_Mutation	G	T	p.S275X
ESCA	TCGA-ZR-A9CJ-01	UCP2	ENST00000310473.3,ENST00000544615.1	chr11	73685896:73686166:73686535:73686716:73687685:73687787,	73686536	73686716	73686625	73686625	Nonsense_Mutation	G	T	p.Y242X
ESCA	TCGA-ZR-A9CJ-01	LRP2	ENST00000263816.3	chr2	170022441:170022564:170025048:170025186:170026211:170026328,	170025049	170025186	170025142	170025142	Nonsense_Mutation	C	A	p.E3848X
ESCA	TCGA-ZR-A9CJ-01	PDK3	ENST00000441463.2	chrX	24549773:24549887:24552045:24552185:24557250:24557954,	24552046	24552185	24552067	24552067	Nonsense_Mutation	G	T	p.E367X
ESCA	TCGA-IC-A6RF-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547487	19547487	Nonsense_Mutation	G	T	p.E166X
ESCA	TCGA-IC-A6RF-01	MLH1	ENST00000447829.1	chr3	37058996:37059090:37061800:37061954:37067127:37067498,37055922:37056035:37061800:37061954:37067127:37067410,	37061801	37061954	37061853	37061853	Nonsense_Mutation	G	T	p.E313X
ESCA	TCGA-IC-A6RF-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709523	176709523	Nonsense_Mutation	C	T	p.R1984X
ESCA	TCGA-IC-A6RF-01	ATP2C2	ENST00000416219.2,ENST00000420010.2,ENST00000262429.4,ENST00000565631.1	chr16	84482138:84482295:84485526:84485697:84486743:84486841,	84485527	84485697	84485637	84485637	Nonsense_Mutation	G	T	p.E591X
ESCA	TCGA-IC-A6RF-01	RBFOX1	ENST00000547372.1,ENST00000535565.2,ENST00000355637.4,ENST00000552089.1	chr16	7726775:7726840:7743316:7743369:7759057:7759133,	7743317	7743369	7743345	7743345	Nonsense_Mutation	G	T	p.E363X
ESCA	TCGA-IC-A6RF-01	IL10RB	ENST00000493295.1,ENST00000290200.2	chr21	34640698:34640822:34648900:34649058:34652056:34652223,	34648901	34649058	34649001	34649001	Nonsense_Mutation	G	T	p.E92X
ESCA	TCGA-IG-A3YB-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000265537.3	chr3	45488382:45488472:45500234:45500378:45515734:45515842,	45500235	45500378	45500280	45500280	Nonsense_Mutation	G	T	p.E218X
ESCA	TCGA-JY-A93C-01	NFX1	ENST00000379521.4,ENST00000318524.6,ENST00000379540.3	chr9	33307191:33307297:33311103:33311175:33313651:33313791,	33311104	33311175	33311168	33311168	Nonsense_Mutation	C	T	p.R481X
ESCA	TCGA-JY-A93C-01	TRAIP	ENST00000482243.1,ENST00000331456.2,ENST00000482582.1	chr3	49879928:49879980:49881233:49881361:49881973:49882013,	49881234	49881361	49881278	49881278	Nonsense_Mutation	G	A	p.Q122X
ESCA	TCGA-JY-A93C-01	TRAIP	ENST00000488860.1	chr3	49879928:49879980:49881233:49881450:49881973:49882013,	49881234	49881450	49881278	49881278	Nonsense_Mutation	G	A	p.Q122X
ESCA	TCGA-JY-A93C-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226923581	226923581	Nonsense_Mutation	G	A	p.Q527X
ESCA	TCGA-JY-A93C-01	ARHGAP32	ENST00000524655.1,ENST00000533509.1,ENST00000310343.9	chr11	128868213:128868363:128910822:128910904:128932174:128932252,	128910823	128910904	128910853	128910853	Nonsense_Mutation	G	A	p.Q325X
ESCA	TCGA-JY-A93C-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186664503	186664503	Nonsense_Mutation	C	G	p.Y3579X
ESCA	TCGA-JY-A6F8-01	NRP2	ENST00000467850.1,ENST00000357785.5	chr2	206631506:206631527:206656958:206657009:206659477:206659782,	206656959	206657009	206656994	206656994	Nonsense_Mutation	G	T	p.E826X
ESCA	TCGA-JY-A6F8-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57270953	57270953	Nonsense_Mutation	G	A	p.R76X
ESCA	TCGA-JY-A6F8-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57270953	57270953	Nonsense_Mutation	G	A	p.R76X
ESCA	TCGA-JY-A6F8-01	MCPH1	ENST00000344683.5	chr8	6299587:6299677:6301913:6303068:6312663:6312773,	6301914	6303068	6302337	6302337	Nonsense_Mutation	C	A	p.S365X
ESCA	TCGA-JY-A6F8-01	CDC7	ENST00000430031.2	chr1	91967210:91967388:91973818:91973954:91977153:91977247,	91973819	91973954	91973869	91973869	Nonsense_Mutation	G	T	p.E84X
ESCA	TCGA-JY-A6F8-01	ZNF385D	ENST00000281523.2	chr3	21465454:21465556:21466983:21467162:21478461:21478695,	21466984	21467162	21467079	21467079	Nonsense_Mutation	C	A	p.G253X
ESCA	TCGA-JY-A6F8-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150167	27150167	Nonsense_Mutation	C	A	p.S156X
ESCA	TCGA-JY-A6F8-01	SH3GLB1	ENST00000482504.1	chr1	87170577:87170654:87181406:87181548:87185189:87185318,	87181407	87181548	87181419	87181419	Nonsense_Mutation	A	T	p.K29X
ESCA	TCGA-JY-A6F8-01	KRT72	ENST00000537672.2,ENST00000398066.3,ENST00000550829.1,ENST00000293745.2	chr12	52981414:52981635:52984619:52984745:52985247:52985412,	52984620	52984745	52984742	52984742	Nonsense_Mutation	G	A	p.Q323X
ESCA	TCGA-JY-A6F8-01	EIF3M	ENST00000526267.1,ENST00000323213.5,ENST00000531120.1,ENST00000525054.1,ENST00000524896.1	chr11	32615411:32615495:32616459:32616559:32617511:32617556,	32616460	32616559	32616545	32616545	Nonsense_Mutation	G	T	p.E235X
ESCA	TCGA-JY-A6F8-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
ESCA	TCGA-JY-A6F8-01	PAIP1	ENST00000436644.2,ENST00000508537.1,ENST00000504639.1,ENST00000338972.4,ENST00000306846.3,ENST00000511321.1,ENST00000514514.1	chr5	43543162:43543218:43547829:43548015:43555931:43556063,	43547830	43548015	43547975	43547975	Nonsense_Mutation	G	T	p.S159X
ESCA	TCGA-LN-A5U7-01	VWF	ENST00000261405.5	chr12	6166022:6166238:6167014:6167210:6172119:6172220,	6167015	6167210	6167105	6167105	Nonsense_Mutation	C	A	p.E547X
ESCA	TCGA-LN-A5U7-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40581920:40582073:40582711:40582855:40584591:40584633,	40582712	40582855	40582750	40582750	Nonsense_Mutation	C	A	p.E1336X
ESCA	TCGA-LN-A5U7-01	TRPM8	ENST00000490797.1,ENST00000324695.4	chr2	234875278:234875399:234878338:234878451:234878853:234879070,	234878339	234878451	234878354	234878354	Nonsense_Mutation	C	T	p.Q681X
ESCA	TCGA-JY-A93E-01	CASP12	ENST00000441710.1	chr11	104761100:104761250:104761924:104762131:104763057:104763230,	104761925	104762131	104762131	104762131	Nonsense_Mutation	C	A	p.E145X
ESCA	TCGA-JY-A93E-01	CASP12	ENST00000417998.1,ENST00000422698.2,ENST00000508062.1,ENST00000446862.1,ENST00000375726.2	chr11	104761100:104761250:104761896:104762131:104763057:104763230,	104761897	104762131	104762131	104762131	Nonsense_Mutation	C	A	p.E145X
ESCA	TCGA-JY-A93E-01	PRKD2	ENST00000291281.4,ENST00000601806.1,ENST00000597641.1,ENST00000595515.1,ENST00000600194.1,ENST00000433867.1	chr19	47207593:47207648:47207751:47207906:47214163:47214295,	47207752	47207906	47207828	47207828	Nonsense_Mutation	G	T	p.S197X
ESCA	TCGA-JY-A93E-01	LMBR1	ENST00000485985.1,ENST00000444719.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1	chr7	156626446:156626486:156629506:156629579:156685621:156685681,	156629507	156629579	156629550	156629550	Nonsense_Mutation	G	T	p.Y32X
ESCA	TCGA-JY-A93E-01	TEKT1	ENST00000575592.1,ENST00000338694.2,ENST00000535086.1	chr17	6703299:6703553:6704065:6704262:6716149:6716335,	6704066	6704262	6704115	6704115	Nonsense_Mutation	G	A	p.Q334X
ESCA	TCGA-JY-A93E-01	SKAP1	ENST00000584924.1,ENST00000581400.2,ENST00000336915.6	chr17	46239830:46239928:46247970:46248021:46257415:46257610,46239830:46239931:46247970:46248021:46257415:46257610,	46247971	46248021	46247980	46247980	Nonsense_Mutation	G	A	p.R290X
ESCA	TCGA-JY-A93E-01	LGALS13	ENST00000600141.1	chr19	40093176:40093223:40095830:40096028:40097862:40097899,	40095831	40096028	40095975	40095975	Nonsense_Mutation	G	T	p.E84X
ESCA	TCGA-JY-A93E-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
ESCA	TCGA-JY-A93E-01	FAM98C	ENST00000586372.1,ENST00000588348.1,ENST00000252530.5	chr19	38895547:38895753:38895983:38896061:38896158:38896275,	38895984	38896061	38895990	38895990	Nonsense_Mutation	G	T	p.E188X
ESCA	TCGA-JY-A93E-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468292	86468292	Nonsense_Mutation	G	T	p.E488X
ESCA	TCGA-R6-A6DN-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925917	48925917	Nonsense_Mutation	G	A	p.Q235X
ESCA	TCGA-R6-A6DN-01	RANBP3L	ENST00000502994.1,ENST00000296604.3,ENST00000515759.1	chr5	36260881:36260966:36262040:36262144:36265060:36265200,	36262041	36262144	36262047	36262047	Nonsense_Mutation	G	T	p.S218X
ESCA	TCGA-R6-A6DN-01	JDP2	ENST00000437176.1,ENST00000559060.1	chr14	75898836:75899039:75904600:75904824:75928128:75928233,75894919:75894955:75904600:75904824:75928128:75928233,	75904601	75904824	75904636	75904636	Nonsense_Mutation	C	T	p.Q16X
ESCA	TCGA-RE-A7BO-01	LIMA1	ENST00000552720.1,ENST00000552909.1,ENST00000552783.1,ENST00000552823.1,ENST00000341247.4,ENST00000394943.3	chr12	50594559:50594667:50598334:50598483:50599766:50599851,	50598335	50598483	50598456	50598456	Nonsense_Mutation	G	T	p.S248X
ESCA	TCGA-RE-A7BO-01	SLC45A4	ENST00000517878.1,ENST00000433583.2	chr8	142229845:142229928:142231675:142231864:142318194:142318391,142229845:142229928:142231675:142231864:142264087:142264225,	142231676	142231864	142231845	142231845	Nonsense_Mutation	G	T	p.Y36X
ESCA	TCGA-RE-A7BO-01	NCF4	ENST00000397147.4,ENST00000248899.6	chr22	37257029:37257245:37260086:37260171:37260960:37261114,	37260087	37260171	37260122	37260122	Nonsense_Mutation	C	A	p.S23X
ESCA	TCGA-RE-A7BO-01	ARPP21	ENST00000417925.1,ENST00000337271.5,ENST00000444190.1,ENST00000458225.1,ENST00000187397.4	chr3	35725217:35725307:35729230:35729375:35730798:35730877,	35729231	35729375	35729309	35729309	Nonsense_Mutation	G	T	p.E114X
ESCA	TCGA-IG-A6QS-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	711982	711982	Nonsense_Mutation	G	T	p.E406X
ESCA	TCGA-IG-A6QS-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257574	158257574	Nonsense_Mutation	G	T	p.E507X
ESCA	TCGA-IG-A6QS-01	MCOLN2	ENST00000463065.1,ENST00000531325.1,ENST00000370608.3,ENST00000284027.5	chr1	85418128:85418213:85422113:85422267:85424211:85424385,	85422114	85422267	85422175	85422175	Nonsense_Mutation	G	T	p.Y168X
ESCA	TCGA-IG-A6QS-01	SLC30A4	ENST00000261867.4	chr15	45778808:45778943:45779724:45779830:45781038:45781240,	45779725	45779830	45779787	45779787	Nonsense_Mutation	G	T	p.S313X
ESCA	TCGA-LN-A49M-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153588357:153588955:153589675:153589938:153590037:153590155,	153589676	153589938	153589759	153589759	Nonsense_Mutation	C	A	p.E1042X
ESCA	TCGA-LN-A49M-01	DENND2A	ENST00000537639.1,ENST00000496613.1,ENST00000275884.6,ENST00000492720.1,ENST00000461883.1	chr7	140268562:140268613:140269444:140269538:140273607:140273805,	140269445	140269538	140269453	140269453	Nonsense_Mutation	G	C	p.S511X
ESCA	TCGA-LN-A49M-01	ADCK2	ENST00000072869.4,ENST00000476491.1,ENST00000498423.1,ENST00000483369.1	chr7	140374410:140374557:140378954:140379083:140380841:140380937,	140378955	140379083	140378976	140378976	Nonsense_Mutation	C	T	p.Q368X
ESCA	TCGA-LN-A49M-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000389398.5	chr16	22145688:22145759:22149680:22149833:22151474:22151565,	22149681	22149833	22149768	22149768	Nonsense_Mutation	C	T	p.Q743X
ESCA	TCGA-LN-A49M-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
ESCA	TCGA-LN-A49M-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000377246.3	chr13	78191733:78191793:78191937:78191997:78192138:78192195,	78191938	78191997	78191993	78191993	Nonsense_Mutation	C	T	p.Q523X
ESCA	TCGA-LN-A49S-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342X
ESCA	TCGA-LN-A49S-01	NDUFAF7	ENST00000483999.1	chr2	37464899:37464978:37468720:37468934:37469777:37469836,	37468721	37468934	37468805	37468805	Nonsense_Mutation	C	T	p.Q165X
ESCA	TCGA-2H-A9GO-01	CCDC159	ENST00000586451.1,ENST00000458408.1,ENST00000588592.1,ENST00000588790.1,ENST00000590054.1	chr19	11460793:11460875:11461483:11461679:11462581:11462616,	11461484	11461679	11461552	11461552	Nonsense_Mutation	C	T	p.Q99X
ESCA	TCGA-2H-A9GO-01	ABI2	ENST00000261017.5,ENST00000430418.1,ENST00000424558.1	chr2	204231606:204231767:204244930:204245107:204255768:204255866,	204244931	204245107	204244967	204244967	Nonsense_Mutation	G	T	p.E108X
ESCA	TCGA-L5-A88Z-01	CWF19L1	ENST00000370379.1	chr10	101992933:101993128:101995423:101995521:101996606:101996726,101992933:101993128:101995423:101995521:101997778:101997988,	101995424	101995521	101995434	101995434	Nonsense_Mutation	G	A	p.Q488X
ESCA	TCGA-L5-A88Z-01	CDNF	ENST00000466269.1	chr10	14867492:14867619:14870143:14870271:14876215:14876332,14867492:14867619:14870143:14870271:14878249:14878289,	14870144	14870271	14870238	14870238	Nonsense_Mutation	G	T	p.S50X
ESCA	TCGA-L5-A88Z-01	NDUFS2	ENST00000392179.4,ENST00000467295.1,ENST00000465923.1,ENST00000476409.2,ENST00000483804.1,ENST00000367993.3	chr1	161179900:161179978:161180093:161180179:161180380:161180486,	161180094	161180179	161180118	161180118	Nonsense_Mutation	C	T	p.R269X
ESCA	TCGA-L5-A8NG-01	CENPN	ENST00000428963.2	chr16	81056201:81056303:81058319:81058383:81060130:81060243,81053704:81053881:81058319:81058383:81060130:81060243,	81058320	81058383	81058368	81058368	Nonsense_Mutation	G	T	p.G228X
ESCA	TCGA-L5-A8NG-01	WWP1	ENST00000518683.1,ENST00000265428.4,ENST00000517970.1	chr8	87393733:87393858:87410570:87410708:87410800:87410867,	87410571	87410708	87410585	87410585	Nonsense_Mutation	G	T	p.E117X
ESCA	TCGA-L5-A8NG-01	PRDX6	ENST00000340385.5,ENST00000470017.1	chr1	173450464:173450621:173454499:173454646:173455393:173455540,	173454500	173454646	173454533	173454533	Nonsense_Mutation	G	T	p.E96X
ESCA	TCGA-R6-A6KZ-01	CRY1	ENST00000008527.5,ENST00000552790.1	chr12	107395541:107395726:107398883:107399026:107415861:107415970,	107398884	107399026	107399004	107399004	Nonsense_Mutation	G	T	p.S97X
ESCA	TCGA-R6-A6KZ-01	MED23	ENST00000354577.4,ENST00000368068.3,ENST00000540546.1,ENST00000368053.4,ENST00000539158.1,ENST00000403834.3,ENST00000368060.3,ENST00000368058.1	chr6	131927618:131927764:131929067:131929211:131931185:131931227,	131929068	131929211	131929076	131929076	Nonsense_Mutation	C	A	p.E411X
ESCA	TCGA-R6-A6KZ-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000336454.3	chr1	100905487:100905554:100908489:100908552:100920960:100921048,	100908490	100908552	100908535	100908535	Nonsense_Mutation	G	T	p.E168X
ESCA	TCGA-IG-A8O2-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60193766	60193766	Nonsense_Mutation	C	A	p.E546X
ESCA	TCGA-IG-A8O2-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557390	210557390	Nonsense_Mutation	G	T	p.E166X
ESCA	TCGA-IG-A8O2-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557390	210557390	Nonsense_Mutation	G	T	p.E166X
ESCA	TCGA-IG-A8O2-01	GPR107	ENST00000372410.3,ENST00000483935.1	chr9	132869797:132869818:132872648:132872705:132887193:132887243,	132872649	132872705	132872660	132872660	Nonsense_Mutation	G	T	p.G440X
ESCA	TCGA-IG-A8O2-01	SUPT20H	ENST00000356185.3,ENST00000360252.4,ENST00000469488.2,ENST00000542180.1,ENST00000466563.2,ENST00000475892.1,ENST00000493537.1,ENST00000495071.2,ENST00000464744.1,ENST00000490716.1,ENST00000350612.6	chr13	37598287:37598330:37598476:37598579:37600340:37600373,37598287:37598330:37598476:37598579:37599456:37599574,	37598477	37598579	37598494	37598494	Nonsense_Mutation	G	T	p.S473X
ESCA	TCGA-IG-A8O2-01	SNX10	ENST00000338523.4	chr7	26331684:26331706:26386039:26386086:26400594:26400651,	26386040	26386086	26386084	26386084	Nonsense_Mutation	G	T	p.E8X
ESCA	TCGA-L5-A4OI-01	TOMM20L	ENST00000360945.2	chr14	58863015:58863059:58869397:58869479:58874043:58874144,	58869398	58869479	58869446	58869446	Nonsense_Mutation	G	T	p.E77X
ESCA	TCGA-L5-A4OI-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309322	46309322	Nonsense_Mutation	G	T	p.C582X
ESCA	TCGA-L5-A4OI-01	NCAPD2	ENST00000382457.4,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6626958:6627125:6630151:6630276:6630963:6631099,	6630152	6630276	6630171	6630171	Nonsense_Mutation	C	T	p.R537X
ESCA	TCGA-L5-A4OI-01	NCAPD2	ENST00000542472.1	chr12	6626958:6627125:6630135:6630276:6630963:6631099,	6630136	6630276	6630171	6630171	Nonsense_Mutation	C	T	p.R537X
ESCA	TCGA-L5-A4OI-01	UTP20	ENST00000261637.4	chr12	101738372:101738528:101739331:101739472:101740228:101740366,	101739332	101739472	101739437	101739437	Nonsense_Mutation	G	T	p.E1571X
ESCA	TCGA-L5-A4OI-01	MRPL15	ENST00000260102.4,ENST00000522521.1	chr8	55049827:55049993:55055222:55055346:55059941:55060104,	55055223	55055346	55055256	55055256	Nonsense_Mutation	G	T	p.E155X
ESCA	TCGA-L5-A4OI-01	STXBP1	ENST00000373299.1	chr9	130442435:130442521:130444684:130444839:130453053:130454995,	130444685	130444839	130444703	130444703	Nonsense_Mutation	G	A	p.W522X
ESCA	TCGA-L5-A4OI-01	BCAP29	ENST00000445771.2,ENST00000442065.1,ENST00000466094.1,ENST00000482371.1,ENST00000486326.1	chr7	107220716:107220746:107221203:107221309:107224326:107224427,	107221204	107221309	107221266	107221266	Nonsense_Mutation	G	T	p.G17X
ESCA	TCGA-L5-A4OI-01	BCAP29	ENST00000479917.1	chr7	107220716:107220746:107221090:107221309:107224326:107224427,	107221091	107221309	107221266	107221266	Nonsense_Mutation	G	T	p.G17X
ESCA	TCGA-L5-A4OI-01	CCDC57	ENST00000389641.4,ENST00000327026.3,ENST00000419322.2,ENST00000392347.1,ENST00000392343.3	chr17	80115623:80115824:80121075:80121233:80129576:80129608,	80121076	80121233	80121090	80121090	Nonsense_Mutation	G	A	p.R676X
ESCA	TCGA-L5-A4OI-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958034	76958034	Nonsense_Mutation	T	A	p.K869X
ESCA	TCGA-L5-A4OI-01	ARSD	ENST00000381154.1	chrX	2827857:2828020:2828699:2828834:2833596:2833733,	2828700	2828834	2828792	2828792	Nonsense_Mutation	G	T	p.S348X
ESCA	TCGA-L5-A4OI-01	ZDHHC15	ENST00000373361.3,ENST00000373367.3,ENST00000541184.1	chrX	74598996:74599033:74636921:74637025:74641698:74641825,	74636922	74637025	74636981	74636981	Nonsense_Mutation	G	T	p.S303X
ESCA	TCGA-L5-A4OI-01	TMEM70	ENST00000312184.5	chr8	74888539:74888726:74890990:74891096:74893389:74893601,	74890991	74891096	74891018	74891018	Nonsense_Mutation	C	T	p.R80X
ESCA	TCGA-L5-A4OI-01	TMEM70	ENST00000517439.1	chr8	74888539:74888726:74890990:74891110:74893389:74893601,	74890991	74891110	74891018	74891018	Nonsense_Mutation	C	T	p.R80X
ESCA	TCGA-L5-A4OI-01	MBD5	ENST00000404807.1,ENST00000407073.1	chr2	149220150:149220253:149221307:149221488:149225909:149228030,	149221308	149221488	149221353	149221353	Nonsense_Mutation	G	T	p.E88X
ESCA	TCGA-L5-A4OI-01	SLC43A1	ENST00000530159.1	chr11	57259275:57259335:57261465:57261644:57263503:57263637,57259275:57259335:57261465:57261644:57268251:57268328,	57261466	57261644	57261522	57261522	Nonsense_Mutation	G	T	p.S272X
ESCA	TCGA-L5-A4OI-01	TXNL1	ENST00000217515.6,ENST00000540155.1,ENST00000590954.1,ENST00000587807.1	chr18	54270128:54270287:54278223:54278328:54281654:54281722,	54278224	54278328	54278226	54278226	Nonsense_Mutation	G	A	p.R280X
ESCA	TCGA-L5-A4OI-01	WDR41	ENST00000513917.1	chr5	76758948:76759051:76785281:76785397:76787994:76788020,76760585:76760634:76785281:76785397:76787994:76788020,76760585:76760634:76785281:76785397:76795151:76795461,	76785282	76785397	76785367	76785367	Nonsense_Mutation	G	A	p.Q28X
ESCA	TCGA-L5-A4OI-01	WDR41	ENST00000511036.1	chr5	76760585:76760634:76785281:76785382:76787994:76788020,	76785282	76785382	76785367	76785367	Nonsense_Mutation	G	A	p.Q28X
ESCA	TCGA-L5-A4OI-01	CHL1	ENST00000453040.1,ENST00000397491.2,ENST00000256509.2	chr3	436375:436555:439909:440068:440699:440831,	439910	440068	439987	439987	Nonsense_Mutation	G	T	p.E1058X
ESCA	TCGA-L5-A4OI-01	CTDP1	ENST00000075430.7	chr18	77488906:77489069:77496354:77496521:77513651:77514501,77477809:77478016:77496354:77496521:77513651:77514501,	77496355	77496521	77496373	77496373	Nonsense_Mutation	G	T	p.E867X
ESCA	TCGA-L5-A4OI-01	ARAP2	ENST00000303965.4,ENST00000512804.1	chr4	36152521:36152666:36160351:36160486:36160952:36161127,	36160352	36160486	36160352	36160352	Nonsense_Mutation	C	A	p.E918X
ESCA	TCGA-L5-A4OI-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156287	50156287	Nonsense_Mutation	G	T	p.E881X
ESCA	TCGA-L5-A4OI-01	NCAPG2	ENST00000449727.2,ENST00000409423.1,ENST00000409339.3,ENST00000467785.1,ENST00000356309.3,ENST00000432615.1	chr7	158482510:158482645:158483259:158483414:158485533:158485648,	158483260	158483414	158483385	158483385	Nonsense_Mutation	G	A	p.R138X
ESCA	TCGA-L5-A4OI-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000518509.1,ENST00000340930.3,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141727787:141727808:141745349:141745554:141749116:141749206,	141745350	141745554	141745480	141745480	Nonsense_Mutation	G	A	p.R656X
ESCA	TCGA-L5-A4OI-01	GUCY2C	ENST00000261170.3,ENST00000535803.1	chr12	14829787:14829905:14832590:14832687:14834289:14834411,	14832591	14832687	14832637	14832637	Nonsense_Mutation	G	A	p.R262X
ESCA	TCGA-L5-A4OI-01	CDKAL1	ENST00000378624.4,ENST00000274695.4,ENST00000378610.1	chr6	20846305:20846409:20955649:20955816:21000457:21000603,	20955650	20955816	20955679	20955679	Nonsense_Mutation	G	T	p.E258X
ESCA	TCGA-L5-A4OI-01	TPP1	ENST00000534644.1,ENST00000528571.1	chr11	6638600:6638659:6638856:6639007:6640426:6640498,	6638857	6639007	6638871	6638871	Nonsense_Mutation	G	T	p.C122X
ESCA	TCGA-L5-A4OI-01	CD160	ENST00000401557.3,ENST00000369288.2	chr1	145698952:145699090:145704016:145704343:145706685:145706827,	145704017	145704343	145704302	145704302	Nonsense_Mutation	G	A	p.R39X
ESCA	TCGA-L5-A4OI-01	TEK	ENST00000380036.4	chr9	27173219:27173360:27180237:27180366:27183456:27183608,	27180238	27180366	27180305	27180305	Nonsense_Mutation	T	A	p.C323X
ESCA	TCGA-L5-A4OI-01	C8orf59	ENST00000458398.2,ENST00000524353.1,ENST00000518091.1,ENST00000417663.2,ENST00000421308.2	chr8	86126790:86126860:86127149:86127266:86129614:86129731,	86127150	86127266	86127175	86127175	Nonsense_Mutation	G	T	p.S69X
ESCA	TCGA-L5-A4OI-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699065	17699065	Nonsense_Mutation	G	T	p.E935X
ESCA	TCGA-LN-A49Y-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67167031:67167136:67168159:67168390:67168538:67168670,	67168160	67168390	67168163	67168163	Nonsense_Mutation	C	A	p.E150X
ESCA	TCGA-LN-A49Y-01	ZSCAN18	ENST00000600897.1	chr19	58600054:58600204:58601231:58601753:58609540:58609598,58600054:58600204:58601231:58601753:58609481:58609570,58600054:58600204:58601231:58601753:58604594:58604765,	58601232	58601753	58601532	58601532	Nonsense_Mutation	C	A	p.E91X
ESCA	TCGA-LN-A49Y-01	NDC80	ENST00000261597.4	chr18	2589202:2589309:2590016:2590161:2595414:2595620,	2590017	2590161	2590098	2590098	Nonsense_Mutation	G	T	p.E318X
ESCA	TCGA-LN-A49Y-01	JAKMIP1	ENST00000409021.3,ENST00000409371.3	chr4	6043885:6043954:6050583:6050649:6051545:6051599,	6050584	6050649	6050610	6050610	Nonsense_Mutation	C	A	p.G668X
ESCA	TCGA-LN-A49Y-01	SEC24B	ENST00000265175.5,ENST00000504968.2,ENST00000399100.2	chr4	110447381:110447555:110448477:110448588:110451444:110451620,	110448478	110448588	110448546	110448546	Nonsense_Mutation	G	T	p.G1012X
ESCA	TCGA-LN-A49Y-01	INPP5F	ENST00000361976.2	chr10	121564895:121564973:121565871:121565992:121567443:121567572,	121565872	121565992	121565957	121565957	Nonsense_Mutation	C	T	p.Q469X
ESCA	TCGA-LN-A49Y-01	TSNAXIP1	ENST00000487120.1,ENST00000415766.3,ENST00000568990.1,ENST00000567852.1	chr16	67848204:67848304:67858485:67858682:67859039:67859165,67855001:67855128:67858485:67858682:67859039:67859165,	67858486	67858682	67858617	67858617	Nonsense_Mutation	G	T	p.E151X
ESCA	TCGA-LN-A49Y-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951371	102951371	Nonsense_Mutation	C	T	p.R617X
ESCA	TCGA-L5-A8NS-01	AVL9	ENST00000404479.1,ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32582866:32582873:32584305:32584391:32588458:32588530,	32584306	32584391	32584374	32584374	Nonsense_Mutation	C	T	p.R95X
ESCA	TCGA-L5-A8NS-01	THTPA	ENST00000554970.1	chr14	24025479:24025552:24025951:24026243:24027903:24028068,	24025952	24026243	24026198	24026198	Nonsense_Mutation	G	T	p.E78X
ESCA	TCGA-L5-A8NS-01	THTPA	ENST00000556015.1	chr14	24025479:24025552:24025951:24026248:24027903:24028068,	24025952	24026248	24026198	24026198	Nonsense_Mutation	G	T	p.E78X
ESCA	TCGA-L5-A8NS-01	NIT1	ENST00000368009.2,ENST00000368008.1	chr1	161087929:161088029:161088575:161088671:161088923:161089031,161087903:161087999:161088575:161088671:161088923:161089031,161087907:161088015:161088575:161088671:161088923:161089031,161087907:161087968:161088575:161088671:161088923:161089031,	161088576	161088671	161088650	161088650	Nonsense_Mutation	C	G	p.S26X
ESCA	TCGA-L5-A8NS-01	XPOT	ENST00000332707.5,ENST00000400935.2	chr12	64810477:64810534:64811825:64811895:64812655:64812874,	64811826	64811895	64811879	64811879	Nonsense_Mutation	C	G	p.S85X
ESCA	TCGA-L5-A8NS-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70779668:70779723:70782310:70782454:70785230:70785509,	70782311	70782454	70782418	70782418	Nonsense_Mutation	G	T	p.E393X
ESCA	TCGA-L5-A8NS-01	CA14	ENST00000369111.4,ENST00000483993.2	chr1	150234923:150235019:150235202:150235269:150235440:150235596,	150235203	150235269	150235229	150235229	Nonsense_Mutation	T	G	p.Y174X
ESCA	TCGA-L5-A8NS-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31812257:31812408:31814985:31815101:31815199:31815350,	31814986	31815101	31815069	31815069	Nonsense_Mutation	G	A	p.R331X
ESCA	TCGA-L5-A8NS-01	IFT20	ENST00000585313.1,ENST00000585089.1,ENST00000395418.3	chr17	26655362:26655759:26656198:26656302:26657468:26657554,	26656199	26656302	26656251	26656251	Nonsense_Mutation	G	C	p.S128X
ESCA	TCGA-L5-A8NS-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18853529:18853776:18856750:18856973:18858774:18858929,	18856751	18856973	18856783	18856783	Nonsense_Mutation	T	A	p.K2063X
ESCA	TCGA-L5-A8NS-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216284011:216284108:216285395:216285524:216286813:216286966,	216285396	216285524	216285436	216285436	Nonsense_Mutation	G	T	p.C545X
ESCA	TCGA-L5-A8NS-01	AZI2	ENST00000479665.1,ENST00000457172.1,ENST00000295748.3,ENST00000414162.1,ENST00000420543.2,ENST00000334100.6,ENST00000463512.1	chr3	28373859:28373918:28378227:28378376:28379427:28379527,	28378228	28378376	28378343	28378343	Nonsense_Mutation	C	T	p.W158X
ESCA	TCGA-L5-A8NJ-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81934216:81934385:81939007:81939112:81941289:81941379,	81939008	81939112	81939050	81939050	Nonsense_Mutation	G	T	p.E469X
ESCA	TCGA-L5-A8NJ-01	EVI5	ENST00000468580.1,ENST00000543509.1,ENST00000491940.1,ENST00000370331.1,ENST00000540033.1	chr1	93089732:93089891:93091350:93091491:93101758:93101893,	93091351	93091491	93091470	93091470	Nonsense_Mutation	C	A	p.E501X
ESCA	TCGA-L5-A8NJ-01	ALDH1A1	ENST00000446946.1	chr9	75555063:75555168:75567850:75567930:75695282:75695311,75555063:75555168:75567850:75567930:75653456:75653638,	75567851	75567930	75567891	75567891	Nonsense_Mutation	A	C	p.L9X
ESCA	TCGA-L5-A8NJ-01	THSD4	ENST00000567838.1,ENST00000357769.4,ENST00000355327.3,ENST00000261862.6	chr15	72040759:72040933:72050240:72050414:72057358:72057538,	72050241	72050414	72050319	72050319	Nonsense_Mutation	G	T	p.E832X
ESCA	TCGA-L5-A8NJ-01	HLA-DQB2	ENST00000427449.1	chr6	32724164:32724243:32726626:32726908:32729436:32729703,	32726627	32726908	32726627	32726627	Nonsense_Mutation	G	A	p.R216X
ESCA	TCGA-L5-A8NJ-01	ABCB10	ENST00000344517.4	chr1	229657338:229657382:229661682:229661863:229662975:229663055,	229661683	229661863	229661843	229661843	Nonsense_Mutation	G	T	p.C582X
ESCA	TCGA-L5-A8NJ-01	ADD3	ENST00000360162.3,ENST00000356080.4,ENST00000277900.8,ENST00000472568.1	chr10	111883997:111884032:111885583:111885703:111886174:111886261,	111885584	111885703	111885689	111885689	Nonsense_Mutation	G	T	p.E503X
ESCA	TCGA-L5-A8NJ-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15835616:15835748:15838985:15839094:15841426:15841587,	15838986	15839094	15839072	15839072	Nonsense_Mutation	G	A	p.Q819X
ESCA	TCGA-L5-A8NJ-01	GBF1	ENST00000369983.3	chr10	104119940:104120152:104120778:104120877:104121474:104121669,	104120779	104120877	104120821	104120821	Nonsense_Mutation	C	T	p.R479X
ESCA	TCGA-L5-A8NJ-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000376237.4,ENST00000487245.1	chr6	31237742:31237862:31237986:31238262:31238849:31239108,	31237987	31238262	31238056	31238056	Nonsense_Mutation	C	A	p.G276X
ESCA	TCGA-L5-A8NQ-01	DGKD	ENST00000430834.1,ENST00000264057.2,ENST00000490764.1,ENST00000409813.3	chr2	234354268:234354408:234355357:234355442:234356732:234356827,	234355358	234355442	234355361	234355361	Nonsense_Mutation	G	A	p.W446X
ESCA	TCGA-L5-A8NQ-01	ITCH	ENST00000483727.1,ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33037215:33037285:33045194:33045279:33049897:33050026,	33045195	33045279	33045245	33045245	Nonsense_Mutation	C	T	p.R462X
ESCA	TCGA-L5-A8NQ-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021437	42021437	Nonsense_Mutation	G	T	p.E1245X
ESCA	TCGA-L5-A8NQ-01	PPP1R16B	ENST00000299824.1,ENST00000373331.2	chr20	37536448:37536578:37536670:37536836:37546799:37551667,	37536671	37536836	37536771	37536771	Nonsense_Mutation	C	T	p.Q377X
ESCA	TCGA-L5-A8NQ-01	KDM4B	ENST00000159111.4,ENST00000536461.1,ENST00000589104.1	chr19	5137972:5138081:5143977:5144163:5144258:5144423,	5143978	5144163	5144140	5144140	Nonsense_Mutation	A	T	p.K905X
ESCA	TCGA-L5-A8NQ-01	SERGEF	ENST00000525422.1,ENST00000532546.1,ENST00000529151.1,ENST00000527494.1,ENST00000528200.1,ENST00000265965.5,ENST00000532265.1,ENST00000530613.1,ENST00000529728.1,ENST00000532389.1	chr11	17899754:17899791:18014477:18014540:18017342:18017382,18010233:18010302:18014477:18014540:18017342:18017382,	18014478	18014540	18014501	18014501	Nonsense_Mutation	G	C	p.S221X
ESCA	TCGA-L5-A8NQ-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8	chr2	48687233:48687292:48688276:48688371:48692075:48692128,	48688277	48688371	48688336	48688336	Nonsense_Mutation	C	A	p.S220X
ESCA	TCGA-L5-A8NQ-01	DCTN5	ENST00000563998.1,ENST00000300087.2,ENST00000568589.1,ENST00000563188.1,ENST00000566298.1	chr16	23654275:23654344:23672490:23672602:23676946:23677014,23669827:23669946:23672490:23672602:23676946:23677014,	23672491	23672602	23672534	23672534	Nonsense_Mutation	G	T	p.E94X
ESCA	TCGA-L5-A8NQ-01	COG4	ENST00000323786.5,ENST00000562200.1,ENST00000393612.4,ENST00000482252.1,ENST00000534772.1,ENST00000564653.1	chr16	70548268:70548412:70551528:70551643:70553551:70553634,	70551529	70551643	70551570	70551570	Nonsense_Mutation	C	A	p.E110X
ESCA	TCGA-L5-A8NQ-01	EVL	ENST00000554031.1,ENST00000402714.2,ENST00000553694.1,ENST00000554045.1,ENST00000392920.3	chr14	100603914:100603981:100604076:100604139:100607516:100607566,	100604077	100604139	100604120	100604120	Nonsense_Mutation	C	T	p.Q359X
ESCA	TCGA-L5-A8NQ-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9258879	9258879	Nonsense_Mutation	G	T	p.G1872X
ESCA	TCGA-L5-A8NQ-01	AP2A2	ENST00000534328.1,ENST00000524559.1,ENST00000332231.5,ENST00000531548.1,ENST00000534485.1,ENST00000529818.1,ENST00000528815.1,ENST00000448903.2,ENST00000526753.1,ENST00000530801.1,ENST00000527024.1	chr11	959436:959505:970168:970311:972061:972191,	970169	970311	970255	970255	Nonsense_Mutation	G	T	p.G75X
ESCA	TCGA-R6-A8W8-01	RPS6KB1	ENST00000443572.2	chr17	57987922:57987972:57990044:57990165:58003795:58003943,	57990045	57990165	57990061	57990061	Nonsense_Mutation	G	T	p.E70X
ESCA	TCGA-R6-A8W8-01	HEATR4	ENST00000560393.1,ENST00000334988.2,ENST00000553558.1	chr14	73985726:73985867:73987555:73987743:73988975:73989928,	73987556	73987743	73987652	73987652	Nonsense_Mutation	G	A	p.Q325X
ESCA	TCGA-R6-A8W8-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000376080.1,ENST00000337006.4,ENST00000491784.1,ENST00000376081.4,ENST00000376083.3	chr9	88284399:88284493:88287464:88287596:88292350:88292497,	88287465	88287596	88287522	88287522	Nonsense_Mutation	G	A	p.Q171X
ESCA	TCGA-R6-A8W8-01	SLC7A6	ENST00000219343.6,ENST00000379152.3	chr16	68300504:68300624:68308593:68309152:68321648:68321774,	68308594	68309152	68308747	68308747	Nonsense_Mutation	C	T	p.Q40X
ESCA	TCGA-R6-A8W8-01	SIGLEC1	ENST00000344754.4	chr20	3667618:3669266:3669801:3669874:3670246:3670349,	3669802	3669874	3669855	3669855	Nonsense_Mutation	G	A	p.Q1673X
ESCA	TCGA-R6-A8W8-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579536	7579536	Nonsense_Mutation	C	A	p.E51X
ESCA	TCGA-R6-A8W8-01	DCAF5	ENST00000554215.1,ENST00000556111.1,ENST00000553293.1,ENST00000557386.1,ENST00000341516.5,ENST00000556847.1	chr14	69542061:69542128:69558390:69558604:69583082:69583212,	69558391	69558604	69558513	69558513	Nonsense_Mutation	G	A	p.R253X
ESCA	TCGA-XP-A8T8-01	HSPA14	ENST00000378372.3	chr10	14894368:14894530:14896123:14896279:14897839:14897942,	14896124	14896279	14896215	14896215	Nonsense_Mutation	G	T	p.G276X
ESCA	TCGA-XP-A8T8-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52871112:52871235:52874236:52874365:52876566:52876715,	52874237	52874365	52874301	52874301	Nonsense_Mutation	C	T	p.W519X
ESCA	TCGA-XP-A8T8-01	EI24	ENST00000343678.4,ENST00000534430.1,ENST00000534546.1,ENST00000535422.1,ENST00000527628.1,ENST00000530985.1,ENST00000531350.1,ENST00000527675.1,ENST00000278903.6,ENST00000525737.1	chr11	125448028:125448153:125448844:125448964:125449988:125450094,	125448845	125448964	125448944	125448944	Nonsense_Mutation	C	T	p.Q181X
ESCA	TCGA-XP-A8T8-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39894913:39894998:39895498:39895740:39896373:39896580,	39895499	39895740	39895606	39895606	Nonsense_Mutation	C	T	p.Q3604X
ESCA	TCGA-XP-A8T8-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6843145:6843177:6848008:6848125:6850680:6850768,	6848009	6848125	6848009	6848009	Nonsense_Mutation	G	A	p.W671X
ESCA	TCGA-XP-A8T8-01	MTMR3	ENST00000401950.2,ENST00000333027.3,ENST00000406629.1,ENST00000351488.3,ENST00000323630.5	chr22	30384468:30384551:30387492:30387659:30394749:30394846,	30387493	30387659	30387632	30387632	Nonsense_Mutation	G	T	p.E145X
ESCA	TCGA-XP-A8T8-01	TMED1	ENST00000589638.1	chr19	10943726:10943889:10945609:10945739:10945931:10946029,	10945610	10945739	10945729	10945729	Nonsense_Mutation	C	A	p.E116X
ESCA	TCGA-XP-A8T8-01	TMED1	ENST00000588259.1	chr19	10943726:10943889:10945609:10945793:10945931:10946029,10943726:10943889:10945609:10945793:10946684:10946877,	10945610	10945793	10945729	10945729	Nonsense_Mutation	C	A	p.E116X
ESCA	TCGA-XP-A8T8-01	ADCK2	ENST00000072869.4,ENST00000473512.1,ENST00000476491.1,ENST00000498423.1,ENST00000483369.1	chr7	140378954:140379083:140380841:140380937:140386789:140386953,	140380842	140380937	140380866	140380866	Nonsense_Mutation	C	T	p.Q412X
ESCA	TCGA-XP-A8T8-01	CASP1	ENST00000436863.3,ENST00000353247.5,ENST00000527979.1,ENST00000594519.1,ENST00000446369.1,ENST00000393136.4,ENST00000415981.2,ENST00000598974.1,ENST00000593315.1,ENST00000526568.1	chr11	104896247:104896327:104896952:104897083:104897568:104897678,	104896953	104897083	104897032	104897032	Nonsense_Mutation	C	A	p.E390X
ESCA	TCGA-L5-A8NT-01	FNDC3B	ENST00000415807.2,ENST00000416957.1,ENST00000336824.4	chr3	172096059:172096226:172098755:172098883:172114953:172115271,	172098756	172098883	172098776	172098776	Nonsense_Mutation	G	T	p.E1066X
ESCA	TCGA-L5-A8NT-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44053621:44053729:44055274:44055404:44057647:44057763,	44055275	44055404	44055385	44055385	Nonsense_Mutation	G	T	p.E195X
ESCA	TCGA-L5-A8NT-01	DNAJC24	ENST00000465995.1	chr11	31429656:31429877:31436357:31436496:31447833:31447902,31392353:31392406:31436357:31436496:31447833:31447902,	31436358	31436496	31436406	31436406	Nonsense_Mutation	G	T	p.E54X
ESCA	TCGA-L5-A8NT-01	AHCYL2	ENST00000325006.3,ENST00000531335.2,ENST00000446544.2,ENST00000490911.1,ENST00000474594.1,ENST00000466924.1,ENST00000446212.1	chr7	129037062:129037165:129040130:129040225:129043219:129043326,	129040131	129040225	129040214	129040214	Nonsense_Mutation	C	T	p.Q303X
ESCA	TCGA-L5-A8NT-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000389118.4,ENST00000522533.1,ENST00000522734.1,ENST00000523189.1,ENST00000522066.1	chr5	170338031:170338138:170341170:170341244:170343468:170343588,	170341171	170341244	170341179	170341179	Nonsense_Mutation	G	T	p.E257X
ESCA	TCGA-L5-A8NT-01	TANK	ENST00000392749.2,ENST00000259075.2	chr2	162081141:162081257:162087481:162088062:162091852:162091892,	162087482	162088062	162087607	162087607	Nonsense_Mutation	G	T	p.G216X
ESCA	TCGA-Z6-A8JE-01	GRK5	ENST00000369108.3,ENST00000392870.2	chr10	121156206:121156284:121182677:121182778:121184504:121184597,	121182678	121182778	121182726	121182726	Nonsense_Mutation	G	T	p.E130X
ESCA	TCGA-Z6-A8JE-01	RBBP7	ENST00000404022.1,ENST00000380087.2	chrX	16881079:16881223:16887198:16887343:16888160:16888467,	16887199	16887343	16887221	16887221	Nonsense_Mutation	G	A	p.Q91X
ESCA	TCGA-Z6-A8JE-01	RBBP7	ENST00000468092.1	chrX	16881079:16881223:16887198:16887377:16888160:16888467,	16887199	16887377	16887221	16887221	Nonsense_Mutation	G	A	p.Q91X
ESCA	TCGA-Z6-A8JE-01	GALNT5	ENST00000259056.4	chr2	158152905:158153025:158156059:158156177:158157187:158157511,	158156060	158156177	158156146	158156146	Nonsense_Mutation	G	A	p.W695X
ESCA	TCGA-Z6-A8JE-01	SNX5	ENST00000474883.1	chr20	17933230:17933354:17934639:17934867:17936008:17936119,	17934640	17934867	17934710	17934710	Nonsense_Mutation	G	A	p.Q107X
ESCA	TCGA-Z6-A8JE-01	SNX5	ENST00000494401.1	chr20	17933230:17933354:17934639:17934875:17936008:17936119,	17934640	17934875	17934710	17934710	Nonsense_Mutation	G	A	p.Q107X
ESCA	TCGA-Z6-A8JE-01	SNX5	ENST00000419004.1,ENST00000377768.3,ENST00000377759.4,ENST00000483485.1,ENST00000490175.1	chr20	17933230:17933354:17934639:17934761:17936008:17936119,	17934640	17934761	17934710	17934710	Nonsense_Mutation	G	A	p.Q107X
ESCA	TCGA-Z6-A8JE-01	USP37	ENST00000258399.3,ENST00000475553.1,ENST00000454775.1,ENST00000418019.1	chr2	219341665:219341704:219344372:219344438:219346792:219346957,	219344373	219344438	219344376	219344376	Nonsense_Mutation	G	T	p.S633X
ESCA	TCGA-Z6-A8JE-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42357021	42357021	Nonsense_Mutation	C	G	p.S398X
ESCA	TCGA-Z6-A8JE-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828297	72828297	Nonsense_Mutation	C	A	p.G2762X
ESCA	TCGA-JY-A6FE-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96059585:96059756:96063853:96063922:96076482:96076590,	96063854	96063922	96063915	96063915	Nonsense_Mutation	G	T	p.C506X
ESCA	TCGA-JY-A6FE-01	WDR66	ENST00000540779.1,ENST00000397454.2,ENST00000288912.4	chr12	122359313:122359589:122361527:122361896:122369651:122369792,	122361528	122361896	122361696	122361696	Nonsense_Mutation	G	T	p.E183X
ESCA	TCGA-JY-A6FE-01	PARD3	ENST00000374789.3,ENST00000340077.5,ENST00000545693.1,ENST00000346874.4,ENST00000374788.3,ENST00000374790.3	chr10	34620044:34620272:34625126:34625171:34626205:34626354,34620044:34620272:34625126:34625171:34626292:34626354,34620044:34620272:34625126:34625171:34626202:34626354,	34625127	34625171	34625163	34625163	Nonsense_Mutation	C	A	p.E860X
ESCA	TCGA-JY-A6FE-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820588	3820588	Nonsense_Mutation	G	A	p.Q955X
ESCA	TCGA-JY-A6FE-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603427	138603427	Nonsense_Mutation	C	T	p.W315X
ESCA	TCGA-JY-A6FE-01	CACNA1A	ENST00000360228.5,ENST00000585802.1,ENST00000574822.1,ENST00000587525.1,ENST00000573710.2	chr19	13340895:13341023:13342523:13342674:13345734:13345850,	13342524	13342674	13342533	13342533	Nonsense_Mutation	G	T	p.C1798X
ESCA	TCGA-JY-A6FE-01	CALCOCO2	ENST00000509784.1	chr17	46933462:46933549:46937675:46937811:46939637:46939666,46933940:46933978:46937675:46937811:46939637:46939666,	46937676	46937811	46937763	46937763	Nonsense_Mutation	G	T	p.G390X
ESCA	TCGA-JY-A6FE-01	ADAM18	ENST00000379866.1,ENST00000265707.5	chr8	39502856:39502993:39505862:39506046:39521313:39521409,	39505863	39506046	39506020	39506020	Nonsense_Mutation	G	T	p.E402X
ESCA	TCGA-L5-A88T-01	IRF1	ENST00000405885.2,ENST00000245414.4	chr5	131821358:131821408:131821942:131822065:131822248:131822331,	131821943	131822065	131821980	131821980	Nonsense_Mutation	G	T	p.Y210X
ESCA	TCGA-L5-A88T-01	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41506169:41508164:41515056:41515506:41517087:41517280,	41515057	41515506	41515451	41515451	Nonsense_Mutation	G	A	p.Q288X
ESCA	TCGA-L5-A88T-01	DNAH3	ENST00000261383.3,ENST00000396036.1,ENST00000415178.1	chr16	21133265:21133445:21136495:21136691:21139007:21139133,	21136496	21136691	21136659	21136659	Nonsense_Mutation	G	T	p.S414X
ESCA	TCGA-L5-A88T-01	NOTCH1	ENST00000277541.6	chr9	139409934:139410168:139410432:139410546:139411723:139411837,	139410433	139410546	139410452	139410452	Nonsense_Mutation	G	C	p.Y550X
ESCA	TCGA-2H-A9GL-01	BAK1	ENST00000374467.3,ENST00000360661.5	chr6	33541603:33541684:33541810:33541991:33543074:33543218,	33541811	33541991	33541885	33541885	Nonsense_Mutation	G	A	p.Q153X
ESCA	TCGA-2H-A9GL-01	DET1	ENST00000268148.8,ENST00000444300.1,ENST00000557842.1,ENST00000564406.1	chr15	89060012:89060204:89070829:89071017:89073853:89074704,	89070830	89071017	89070882	89070882	Nonsense_Mutation	G	A	p.Q418X
ESCA	TCGA-2H-A9GL-01	COPS6	ENST00000426712.1,ENST00000303904.3,ENST00000418625.1	chr7	99688059:99688110:99688214:99688277:99688524:99688572,	99688215	99688277	99688230	99688230	Nonsense_Mutation	G	T	p.E147X
ESCA	TCGA-S8-A6BW-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32457055:32457416:32459368:32459512:32466287:32466439,	32459369	32459512	32459470	32459470	Nonsense_Mutation	G	A	p.Q794X
ESCA	TCGA-S8-A6BW-01	RABGAP1	ENST00000373647.4,ENST00000373643.5,ENST00000456584.1	chr9	125860993:125861077:125861756:125861828:125863844:125864042,	125861757	125861828	125861817	125861817	Nonsense_Mutation	G	T	p.E960X
ESCA	TCGA-S8-A6BW-01	C5	ENST00000223642.1	chr9	123744121:123744217:123744932:123745092:123751323:123751399,	123744933	123745092	123744998	123744998	Nonsense_Mutation	C	A	p.E1109X
ESCA	TCGA-LN-A8HZ-01	MBTPS1	ENST00000343411.3	chr16	84129206:84129410:84132657:84132915:84135225:84135712,	84132658	84132915	84132766	84132766	Nonsense_Mutation	G	A	p.Q105X
ESCA	TCGA-LN-A8HZ-01	DPH3	ENST00000285082.4	chr3	16301930:16302336:16305661:16305736:16306101:16306284,	16305662	16305736	16305692	16305692	Nonsense_Mutation	G	T	p.C51X
ESCA	TCGA-LN-A8HZ-01	NLRP4	ENST00000589437.1,ENST00000301295.6,ENST00000587891.1,ENST00000346986.5	chr19	56382192:56382363:56388361:56388532:56390159:56390330,	56388362	56388532	56388459	56388459	Nonsense_Mutation	G	T	p.E875X
ESCA	TCGA-L5-A8NL-01	STT3B	ENST00000488151.1,ENST00000295770.2	chr3	31670813:31670903:31674426:31674639:31677475:31677537,	31674427	31674639	31674472	31674472	Nonsense_Mutation	G	T	p.E745X
ESCA	TCGA-L5-A8NL-01	STT3B	ENST00000463044.1	chr3	31670813:31670903:31674426:31674676:31677475:31677537,	31674427	31674676	31674472	31674472	Nonsense_Mutation	G	T	p.E745X
ESCA	TCGA-L5-A8NL-01	ASS1	ENST00000372393.3	chr9	133325658:133325720:133327610:133327720:133329691:133329760,	133327611	133327720	133327684	133327684	Nonsense_Mutation	G	A	p.W23X
ESCA	TCGA-L5-A8NL-01	EIF2B5	ENST00000491144.1	chr3	183854399:183854524:183855407:183855863:183855953:183856034,	183855408	183855863	183855472	183855472	Nonsense_Mutation	C	T	p.R129X
ESCA	TCGA-L5-A8NL-01	HNRNPUL1	ENST00000595806.1,ENST00000378215.4,ENST00000352456.3	chr19	41810147:41810166:41811550:41811772:41812353:41812830,	41811551	41811772	41811770	41811770	Nonsense_Mutation	C	T	p.Q818X
ESCA	TCGA-L5-A8NL-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000595018.1,ENST00000263367.3,ENST00000593587.1	chr19	41810147:41810166:41811580:41811772:41812353:41812830,	41811581	41811772	41811770	41811770	Nonsense_Mutation	C	T	p.Q818X
ESCA	TCGA-L5-A8NL-01	HNRNPUL1	ENST00000602130.1	chr19	41810147:41810166:41811736:41811772:41812353:41812830,	41811737	41811772	41811770	41811770	Nonsense_Mutation	C	T	p.Q818X
ESCA	TCGA-L5-A8NL-01	CENPI	ENST00000423383.1,ENST00000372927.1,ENST00000218507.5	chrX	100387380:100387445:100395654:100395749:100400052:100400188,	100395655	100395749	100395679	100395679	Nonsense_Mutation	G	T	p.E499X
ESCA	TCGA-L5-A4OE-01	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000450235.1,ENST00000402746.1	chr7	1855717:1855864:1937835:1938026:1976322:1976533,	1937836	1938026	1937848	1937848	Nonsense_Mutation	G	T	p.C662X
ESCA	TCGA-L5-A4OE-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183518342:183518423:183518898:183519058:183519885:183520056,	183518899	183519058	183519019	183519019	Nonsense_Mutation	G	T	p.E990X
ESCA	TCGA-L5-A4OE-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472507	92472507	Nonsense_Mutation	C	A	p.E605X
ESCA	TCGA-L5-A4OE-01	MYO3A	ENST00000265944.5,ENST00000543632.1	chr10	26312950:26313016:26315305:26315461:26355903:26356003,	26315306	26315461	26315325	26315325	Nonsense_Mutation	G	T	p.E273X
ESCA	TCGA-L5-A4OE-01	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000533657.1,ENST00000529307.1,ENST00000528856.1,ENST00000531668.1	chr11	34118788:34118843:34119244:34119308:34120849:34120879,	34119245	34119308	34119305	34119305	Nonsense_Mutation	C	T	p.R688X
ESCA	TCGA-L5-A4OE-01	ADAM7	ENST00000520720.1,ENST00000380789.1,ENST00000175238.6	chr8	24350555:24350742:24356748:24356829:24357690:24357769,	24356749	24356829	24356795	24356795	Nonsense_Mutation	C	A	p.S630X
ESCA	TCGA-JY-A6FD-01	WDR45	ENST00000396681.4,ENST00000473974.1,ENST00000322995.8,ENST00000465382.1,ENST00000376372.3	chrX	48933524:48933604:48935301:48935406:48935495:48935570,48934303:48934412:48935301:48935406:48935495:48935570,48934303:48934409:48935301:48935406:48935495:48935570,	48935302	48935406	48935401	48935401	Nonsense_Mutation	C	A	p.E46X
ESCA	TCGA-JY-A6FD-01	HEXB	ENST00000504459.1,ENST00000261416.7,ENST00000511181.1	chr5	74009362:74009460:74011334:74011515:74012411:74012498,	74011335	74011515	74011457	74011457	Nonsense_Mutation	G	T	p.E342X
ESCA	TCGA-JY-A6FD-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
ESCA	TCGA-JY-A6FD-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000294599.4	chr1	3428569:3428692:3431113:3431236:3431965:3432091,	3431114	3431236	3431144	3431144	Nonsense_Mutation	G	A	p.Q275X
ESCA	TCGA-JY-A6FD-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7170547:7170762:7172300:7172445:7174593:7174742,	7172301	7172445	7172394	7172394	Nonsense_Mutation	G	T	p.S392X
ESCA	TCGA-IG-A4QS-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
ESCA	TCGA-IG-A4QS-01	GOLGB1	ENST00000393667.3,ENST00000482512.1,ENST00000491690.1,ENST00000340645.5	chr3	121383376:121383461:121383772:121383878:121386322:121386457,	121383773	121383878	121383820	121383820	Nonsense_Mutation	G	A	p.Q3210X
ESCA	TCGA-IG-A4QS-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000350494.6,ENST00000542824.1,ENST00000545302.1,ENST00000541748.1,ENST00000351393.6,ENST00000358232.6,ENST00000540766.1,ENST00000442325.2	chr18	33747118:33747185:33750025:33750159:33751009:33751123,	33750026	33750159	33750037	33750037	Nonsense_Mutation	G	A	p.W761X
ESCA	TCGA-2H-A9GH-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
ESCA	TCGA-2H-A9GH-01	IL17RC	ENST00000494365.1	chr3	9971535:9971581:9971711:9971833:9972083:9972128,9971535:9971581:9971711:9971833:9972578:9972627,	9971712	9971833	9971729	9971729	Nonsense_Mutation	A	T	p.K463X
ESCA	TCGA-2H-A9GH-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1	chr3	64587619:64587889:64589597:64589765:64589902:64590007,	64589598	64589765	64589620	64589620	Nonsense_Mutation	C	T	p.W1242X
ESCA	TCGA-LN-A49L-01	EMC1	ENST00000375199.3,ENST00000477853.1,ENST00000375208.3	chr1	19557754:19557916:19559117:19559267:19559429:19559629,	19559118	19559267	19559220	19559220	Nonsense_Mutation	A	T	p.Y560X
ESCA	TCGA-LN-A49L-01	PARPBP	ENST00000543784.1	chr12	102547646:102547754:102558215:102558386:102559506:102559661,102517765:102517819:102558215:102558386:102559506:102559661,	102558216	102558386	102558360	102558360	Nonsense_Mutation	C	T	p.R214X
ESCA	TCGA-LN-A49L-01	NAE1	ENST00000290810.3,ENST00000394074.2,ENST00000379463.2,ENST00000359087.4	chr16	66844599:66844675:66847466:66847600:66847689:66847749,	66847467	66847600	66847533	66847533	Nonsense_Mutation	A	C	p.L323X
ESCA	TCGA-LN-A49L-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170511876:170511960:170520250:170520348:170523158:170523255,	170520251	170520348	170520292	170520292	Nonsense_Mutation	G	A	p.R91X
ESCA	TCGA-LN-A49L-01	TTC28	ENST00000397906.2	chr22	28501266:28501790:28503049:28504391:28559079:28559587,	28503050	28504391	28503690	28503690	Nonsense_Mutation	G	A	p.R715X
ESCA	TCGA-LN-A49L-01	MICALL1	ENST00000424008.1	chr22	38333086:38333201:38333752:38333826:38336715:38337194,	38333753	38333826	38333778	38333778	Nonsense_Mutation	G	T	p.E817X
ESCA	TCGA-LN-A49L-01	MICALL1	ENST00000215957.6,ENST00000402631.1	chr22	38333086:38333201:38333752:38333799:38336715:38337194,	38333753	38333799	38333778	38333778	Nonsense_Mutation	G	T	p.E817X
ESCA	TCGA-JY-A939-01	GPD2	ENST00000540309.1,ENST00000492005.1,ENST00000409674.1,ENST00000438166.2,ENST00000310454.6,ENST00000464846.1,ENST00000409125.4,ENST00000409861.1	chr2	157435597:157435676:157436201:157436300:157439304:157439426,	157436202	157436300	157436298	157436298	Nonsense_Mutation	C	T	p.Q686X
ESCA	TCGA-JY-A939-01	RASAL2	ENST00000462775.1,ENST00000448150.3,ENST00000433130.2,ENST00000367649.3	chr1	178426817:178427679:178433412:178433547:178435054:178435257,	178433413	178433547	178433416	178433416	Nonsense_Mutation	C	T	p.Q1086X
ESCA	TCGA-JY-A939-01	NCDN	ENST00000373253.3,ENST00000356090.4,ENST00000373243.2	chr1	36025926:36026895:36027992:36028234:36028802:36029027,	36027993	36028234	36028217	36028217	Nonsense_Mutation	G	A	p.W456X
ESCA	TCGA-JY-A939-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000507711.1	chr4	48625142:48625196:48636307:48636507:48686689:48686812,	48636308	48636507	48636316	48636316	Nonsense_Mutation	C	A	p.E38X
ESCA	TCGA-JY-A939-01	UBR3	ENST00000430321.1	chr2	170917827:170917953:170929913:170930117:170936323:170936533,	170929914	170930117	170930076	170930076	Nonsense_Mutation	G	T	p.E1720X
ESCA	TCGA-JY-A939-01	UBR3	ENST00000392631.1,ENST00000474426.1,ENST00000272793.5,ENST00000439681.1,ENST00000392632.2,ENST00000418381.1,ENST00000444475.1	chr2	170917827:170917953:170929937:170930117:170936323:170936533,	170929938	170930117	170930076	170930076	Nonsense_Mutation	G	T	p.E1720X
ESCA	TCGA-JY-A939-01	ROPN1B	ENST00000251776.4,ENST00000505382.1,ENST00000514116.1,ENST00000511082.1	chr3	125695846:125696008:125701112:125701288:125702096:125702294,	125701113	125701288	125701236	125701236	Nonsense_Mutation	G	T	p.E174X
ESCA	TCGA-L5-A8NE-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859031	32859031	Nonsense_Mutation	C	T	p.Q119X
ESCA	TCGA-L5-A8NE-01	FAM117A	ENST00000513602.1	chr17	47799868:47799956:47809912:47810082:47824542:47824625,47799868:47799956:47809912:47810082:47865858:47865937,	47809913	47810082	47810056	47810056	Nonsense_Mutation	C	A	p.E75X
ESCA	TCGA-L5-A8NE-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000337989.7,ENST00000263119.5	chr22	24560367:24560531:24561497:24561594:24562606:24563281,	24561498	24561594	24561508	24561508	Nonsense_Mutation	C	T	p.R1641X
ESCA	TCGA-L5-A8NE-01	FCRL2	ENST00000368181.4	chr1	157736644:157736761:157740198:157740456:157745564:157745585,	157740199	157740456	157740453	157740453	Nonsense_Mutation	G	T	p.S19X
ESCA	TCGA-2H-A9GM-01	SLC13A3	ENST00000290317.5,ENST00000495082.1,ENST00000472148.1,ENST00000279027.4,ENST00000396360.1,ENST00000413164.2,ENST00000468915.1	chr20	45194994:45195029:45204211:45204324:45212210:45212308,	45204212	45204324	45204264	45204264	Nonsense_Mutation	C	T	p.W427X
ESCA	TCGA-2H-A9GM-01	CCNE1	ENST00000357943.5,ENST00000444983.2,ENST00000262643.3	chr19	30303631:30303683:30303875:30303944:30308043:30308189,	30303876	30303944	30303882	30303882	Nonsense_Mutation	C	T	p.Q40X
ESCA	TCGA-2H-A9GM-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7230280	7230280	Nonsense_Mutation	C	T	p.Q650X
ESCA	TCGA-2H-A9GM-01	ZNF790	ENST00000528994.1,ENST00000525288.1,ENST00000356725.4,ENST00000586323.1	chr19	37310838:37311016:37314186:37314282:37314568:37314692,	37314187	37314282	37314262	37314262	Nonsense_Mutation	C	A	p.E52X
ESCA	TCGA-2H-A9GM-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145534888:145535019:145535734:145535901:145535997:145536140,	145535735	145535901	145535888	145535888	Nonsense_Mutation	G	A	p.W692X
ESCA	TCGA-LN-A4A9-01	TECPR1	ENST00000423128.1	chr7	97874301:97874379:97875233:97875477:97880705:97880860,97874301:97874379:97875233:97875477:97880730:97880860,	97875234	97875477	97875324	97875324	Nonsense_Mutation	G	T	p.C45X
ESCA	TCGA-LN-A4A9-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449856	85449856	Nonsense_Mutation	G	T	p.E429X
ESCA	TCGA-LN-A4A9-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991232	21991232	Nonsense_Mutation	G	T	p.S877X
ESCA	TCGA-LN-A4A9-01	GRAMD4	ENST00000361034.3,ENST00000406902.1,ENST00000408031.1	chr22	47071364:47071449:47072496:47072565:47073043:47075580,	47072497	47072565	47072525	47072525	Nonsense_Mutation	C	G	p.S531X
ESCA	TCGA-R6-A6Y0-01	ZNF517	ENST00000528012.1	chr8	146028287:146028332:146029025:146029152:146029509:146029623,146028272:146028332:146029025:146029152:146029530:146029623,	146029026	146029152	146029026	146029026	Nonsense_Mutation	G	T	p.E12X
ESCA	TCGA-R6-A6Y0-01	MYO1B	ENST00000304164.4,ENST00000392318.3	chr2	192265107:192265194:192267357:192267444:192272840:192272915,192265474:192265561:192267357:192267444:192272840:192272915,	192267358	192267444	192267361	192267361	Nonsense_Mutation	C	T	p.R825X
ESCA	TCGA-R6-A6Y0-01	GIGYF2	ENST00000463554.1,ENST00000440945.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233613696:233613792:233620932:233621044:233625189:233625301,	233620933	233621044	233620984	233620984	Nonsense_Mutation	C	T	p.R107X
ESCA	TCGA-R6-A6Y0-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1,ENST00000599719.1	chr19	41787067:41787180:41798149:41798416:41800242:41800293,	41798150	41798416	41798162	41798162	Nonsense_Mutation	G	T	p.G338X
ESCA	TCGA-L5-A4OQ-01	MOV10	ENST00000468624.1,ENST00000496577.1,ENST00000369645.1,ENST00000413052.2,ENST00000369644.1,ENST00000357443.2	chr1	113232615:113232720:113234286:113234421:113235382:113235551,	113234287	113234421	113234375	113234375	Nonsense_Mutation	C	T	p.Q309X
ESCA	TCGA-LN-A49P-01	SIK2	ENST00000304987.3	chr11	111486966:111487083:111491062:111491126:111558724:111558886,	111491063	111491126	111491117	111491117	Nonsense_Mutation	G	T	p.E103X
ESCA	TCGA-LN-A49P-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470625	161470625	Nonsense_Mutation	G	T	p.E441X
ESCA	TCGA-LN-A49P-01	EFCAB1	ENST00000433756.1,ENST00000523092.1	chr8	49642322:49642430:49643098:49643203:49647652:49647791,	49643099	49643203	49643126	49643126	Nonsense_Mutation	G	A	p.R98X
ESCA	TCGA-LN-A49P-01	UBR7	ENST00000554232.1	chr14	93673400:93673786:93676169:93676303:93676993:93677054,	93676170	93676303	93676302	93676302	Nonsense_Mutation	A	T	p.R95X
ESCA	TCGA-V5-A7RC-01	OGT	ENST00000459760.1,ENST00000373719.3,ENST00000373701.3	chrX	70774408:70774442:70775039:70775235:70775803:70775944,	70775040	70775235	70775170	70775170	Nonsense_Mutation	G	T	p.E287X
ESCA	TCGA-V5-A7RC-01	HDAC1	ENST00000481281.1,ENST00000428704.1,ENST00000463172.1	chr1	32757761:32757819:32768221:32768334:32782265:32782383,	32768222	32768334	32768245	32768245	Nonsense_Mutation	G	T	p.G25X
ESCA	TCGA-V5-A7RC-01	RHOBTB3	ENST00000504949.1,ENST00000379982.3,ENST00000506959.1	chr5	95067659:95067788:95072592:95072779:95084036:95084145,	95072593	95072779	95072779	95072779	Nonsense_Mutation	G	T	p.E139X
ESCA	TCGA-V5-A7RC-01	ZBTB8OS	ENST00000479075.1	chr1	33099245:33099328:33099551:33099711:33116002:33116126,33099245:33099328:33099551:33099711:33100368:33100393,33099245:33099328:33099551:33099711:33116033:33116126,	33099552	33099711	33099660	33099660	Nonsense_Mutation	C	A	p.G58X
ESCA	TCGA-V5-A7RC-01	ZBTB8OS	ENST00000436661.1,ENST00000483138.1,ENST00000468695.1,ENST00000373501.2	chr1	33099245:33099328:33099551:33099673:33116029:33116151,33099245:33099328:33099551:33099673:33100368:33100393,	33099552	33099673	33099660	33099660	Nonsense_Mutation	C	A	p.G58X
ESCA	TCGA-V5-A7RC-01	PSMA5	ENST00000484563.1	chr1	109957858:109957985:109964481:109964548:109968923:109968973,	109964482	109964548	109964493	109964493	Nonsense_Mutation	C	A	p.E29X
ESCA	TCGA-L5-A4ON-01	LOXL2	ENST00000389131.3,ENST00000520925.1	chr8	23179642:23179794:23185894:23186078:23190913:23191008,	23185895	23186078	23186066	23186066	Nonsense_Mutation	G	A	p.R327X
ESCA	TCGA-L5-A4ON-01	LOXL2	ENST00000520349.1	chr8	23179642:23179794:23185894:23186099:23190913:23191008,	23185895	23186099	23186066	23186066	Nonsense_Mutation	G	A	p.R327X
ESCA	TCGA-L5-A4ON-01	SLC30A9	ENST00000513699.1,ENST00000505523.1,ENST00000264451.7	chr4	42077673:42077803:42080228:42080342:42088098:42088386,	42080229	42080342	42080286	42080286	Nonsense_Mutation	G	T	p.E536X
ESCA	TCGA-2H-A9GQ-01	IPP	ENST00000359942.4	chr1	46159995:46160187:46165741:46165862:46179917:46179924,	46165742	46165862	46165855	46165855	Nonsense_Mutation	C	T	p.W513X
ESCA	TCGA-2H-A9GQ-01	USP30	ENST00000392784.2,ENST00000377883.3,ENST00000257548.5	chr12	109519737:109519824:109520467:109520548:109520647:109520722,	109520468	109520548	109520495	109520495	Nonsense_Mutation	G	T	p.E299X
ESCA	TCGA-2H-A9GR-01	CENPP	ENST00000375587.3	chr9	95094451:95094633:95099822:95099911:95107980:95108069,	95099823	95099911	95099903	95099903	Nonsense_Mutation	G	T	p.E124X
ESCA	TCGA-2H-A9GR-01	BTBD1	ENST00000379403.2	chr15	83686712:83686977:83687458:83687605:83689426:83689514,83686712:83686977:83687458:83687605:83698887:83699080,	83687459	83687605	83687549	83687549	Nonsense_Mutation	A	T	p.C400X
ESCA	TCGA-2H-A9GR-01	SARS2	ENST00000594171.1,ENST00000600042.1,ENST00000600448.1,ENST00000448145.2,ENST00000221431.6,ENST00000430193.3	chr19	39410401:39410507:39410725:39410789:39412031:39412086,	39410726	39410789	39410778	39410778	Nonsense_Mutation	G	A	p.Q203X
ESCA	TCGA-2H-A9GR-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126736591:126736735:126737136:126737371:126739044:126739187,	126737137	126737371	126737155	126737155	Nonsense_Mutation	G	T	p.E1227X
ESCA	TCGA-2H-A9GR-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145609279:145609473:145610219:145610480:145613012:145613306,	145610220	145610480	145610441	145610441	Nonsense_Mutation	C	T	p.R271X
ESCA	TCGA-2H-A9GR-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829130	61829130	Nonsense_Mutation	C	A	p.G3837X
ESCA	TCGA-2H-A9GR-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042140	134042140	Nonsense_Mutation	C	T	p.R2371X
ESCA	TCGA-2H-A9GR-01	MTSS1	ENST00000431961.2,ENST00000354184.4	chr8	125568053:125568145:125568472:125568595:125575022:125575230,	125568473	125568595	125568580	125568580	Nonsense_Mutation	G	A	p.R433X
ESCA	TCGA-2H-A9GR-01	MTSS1	ENST00000524090.1,ENST00000325064.5,ENST00000520094.1,ENST00000523587.1,ENST00000519168.1,ENST00000518547.1,ENST00000395508.2	chr8	125568053:125568145:125568472:125568646:125575022:125575230,125568053:125568145:125568472:125568646:125569921:125570116,	125568473	125568646	125568580	125568580	Nonsense_Mutation	G	A	p.R433X
ESCA	TCGA-2H-A9GR-01	CHMP2A	ENST00000312547.2,ENST00000600118.1,ENST00000601220.1	chr19	59062932:59063143:59063272:59063334:59063421:59063552,	59063273	59063334	59063275	59063275	Nonsense_Mutation	G	T	p.S180X
ESCA	TCGA-L5-A8NF-01	PKD1	ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2143811:2144014:2144092:2144211:2147148:2147242,	2144093	2144211	2144123	2144123	Nonsense_Mutation	G	A	p.Q3530X
ESCA	TCGA-L5-A8NF-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643732	138643732	Nonsense_Mutation	G	T	p.E210X
ESCA	TCGA-L5-A8NF-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643732	138643732	Nonsense_Mutation	G	T	p.E210X
ESCA	TCGA-L5-A8NF-01	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82126024	82126024	Nonsense_Mutation	T	A	p.K60X
ESCA	TCGA-L5-A8NF-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38266203:38266472:38320073:38320592:38357092:38357470,	38320074	38320592	38320271	38320271	Nonsense_Mutation	C	A	p.E234X
ESCA	TCGA-L5-A8NF-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40631848:40631905:40634284:40634419:40637351:40637483,	40634285	40634419	40634305	40634305	Nonsense_Mutation	G	T	p.E198X
ESCA	TCGA-L5-A8NF-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2	chr20	9440281:9440457:9449217:9449319:9453436:9453494,	9449218	9449319	9449234	9449234	Nonsense_Mutation	C	T	p.R1089X
ESCA	TCGA-L5-A8NF-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715895	68715895	Nonsense_Mutation	C	A	p.S228X
ESCA	TCGA-L5-A8NF-01	SLC6A12	ENST00000542825.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	304391:304493:305289:305427:305935:306048,	305290	305427	305292	305292	Nonsense_Mutation	C	A	p.E442X
ESCA	TCGA-R6-A6XG-01	DGCR2	ENST00000608548.1,ENST00000537045.1,ENST00000263196.7	chr22	19035952:19036156:19044498:19044675:19050714:19050790,	19044499	19044675	19044545	19044545	Nonsense_Mutation	C	T	p.W252X
ESCA	TCGA-R6-A6XG-01	HDAC7	ENST00000477203.2	chr12	48189369:48189550:48189997:48190081:48190799:48190925,	48189998	48190081	48190041	48190041	Nonsense_Mutation	G	T	p.C248X
ESCA	TCGA-R6-A6XG-01	HDAC7	ENST00000470668.1,ENST00000430670.1,ENST00000354334.3	chr12	48189449:48189550:48189989:48190081:48190799:48190925,	48189990	48190081	48190041	48190041	Nonsense_Mutation	G	T	p.C248X
ESCA	TCGA-R6-A6XG-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7640368:7640683:7647676:7647997:7649408:7649729,	7647677	7647997	7647722	7647722	Nonsense_Mutation	C	A	p.G459X
ESCA	TCGA-R6-A6XG-01	PRG4	ENST00000367483.4,ENST00000445192.2,ENST00000367484.3	chr1	186270723:186270843:186273239:186273389:186275449:186275610,186270723:186270843:186273239:186273389:186273925:186274054,	186273240	186273389	186273374	186273374	Nonsense_Mutation	G	T	p.E152X
ESCA	TCGA-R6-A6XG-01	TLCD1	ENST00000580518.1	chr17	27052321:27052404:27052498:27052581:27054836:27054953,	27052499	27052581	27052534	27052534	Nonsense_Mutation	G	T	p.S81X
ESCA	TCGA-R6-A6XG-01	FRMD5	ENST00000402883.1	chr15	44162964:44165420:44166316:44166660:44175900:44176007,	44166317	44166660	44166328	44166328	Nonsense_Mutation	C	A	p.E490X
ESCA	TCGA-L5-A893-01	LEKR1	ENST00000483177.1	chr3	156547074:156547166:156570556:156570771:156638363:156638483,156547074:156547166:156570556:156570771:156606085:156606258,	156570557	156570771	156570674	156570674	Nonsense_Mutation	G	T	p.G56X
ESCA	TCGA-L5-A893-01	KANK1	ENST00000382303.1,ENST00000382293.3,ENST00000382297.2,ENST00000489369.1	chr9	711172:713464:730050:730248:731157:731266,	730051	730248	730134	730134	Nonsense_Mutation	G	T	p.E928X
ESCA	TCGA-L5-A893-01	TMTC3	ENST00000266712.6	chr12	88584229:88584399:88586380:88586607:88588614:88593664,	88586381	88586607	88586397	88586397	Nonsense_Mutation	A	T	p.K575X
ESCA	TCGA-L5-A893-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108099904:108100050:108106396:108106561:108114679:108114811,	108106397	108106561	108106561	108106561	Nonsense_Mutation	G	T	p.E166X
ESCA	TCGA-L5-A893-01	PICALM	ENST00000356360.5,ENST00000532603.1	chr11	85670079:85670103:85685750:85685855:85687665:85687725,85670079:85670103:85685750:85685855:85692171:85692271,	85685751	85685855	85685805	85685805	Nonsense_Mutation	G	T	p.Y630X
ESCA	TCGA-2H-A9GF-01	ZFAND3	ENST00000287218.4,ENST00000373389.5	chr6	37897734:37897775:38029368:38029551:38050167:38050233,	38029369	38029551	38029503	38029503	Nonsense_Mutation	C	T	p.Q83X
ESCA	TCGA-KH-A6WC-01	OSR2	ENST00000435298.2	chr8	99961066:99961836:99962883:99962983:99963828:99964328,	99962884	99962983	99962900	99962900	Nonsense_Mutation	G	T	p.E225X
ESCA	TCGA-KH-A6WC-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122749773:122749883:122754385:122754550:122756298:122756438,	122754386	122754550	122754388	122754388	Nonsense_Mutation	G	T	p.Y558X
ESCA	TCGA-KH-A6WC-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000434620.1	chr8	121240948:121241008:121243705:121243857:121256117:121256247,	121243706	121243857	121243717	121243717	Nonsense_Mutation	G	T	p.G737X
ESCA	TCGA-KH-A6WC-01	EXOC5	ENST00000555148.1,ENST00000413566.2,ENST00000554598.1	chr14	57706312:57706377:57710882:57711077:57713428:57713545,	57710883	57711077	57710888	57710888	Nonsense_Mutation	C	A	p.E154X
ESCA	TCGA-KH-A6WC-01	TRABD	ENST00000395829.1,ENST00000395827.1,ENST00000463233.1,ENST00000380909.4,ENST00000303434.4	chr22	50633328:50633469:50635669:50635780:50635877:50636017,	50635670	50635780	50635730	50635730	Nonsense_Mutation	G	T	p.E161X
ESCA	TCGA-KH-A6WC-01	GPSM2	ENST00000264126.3,ENST00000441735.1,ENST00000406462.2	chr1	109461234:109461411:109465038:109465198:109466621:109466836,	109465039	109465198	109465146	109465146	Nonsense_Mutation	C	A	p.C516X
ESCA	TCGA-KH-A6WC-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000532765.1,ENST00000278616.4,ENST00000533690.1	chr11	108186549:108186638:108186737:108186840:108188099:108188194,	108186738	108186840	108186796	108186796	Nonsense_Mutation	G	T	p.E2052X
ESCA	TCGA-KH-A6WC-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579907	82579907	Nonsense_Mutation	C	A	p.E3333X
ESCA	TCGA-JY-A6FB-01	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873732	35873732	Nonsense_Mutation	G	T	p.E230X
ESCA	TCGA-JY-A6FB-01	PRDM5	ENST00000264808.3,ENST00000502409.1	chr4	121737607:121737729:121737986:121738079:121739507:121739682,	121737987	121738079	121737990	121737990	Nonsense_Mutation	G	T	p.S247X
ESCA	TCGA-JY-A6FB-01	C16orf71	ENST00000299320.5,ENST00000590191.1	chr16	4796927:4797026:4797343:4797635:4798725:4799396,	4797344	4797635	4797459	4797459	Nonsense_Mutation	G	T	p.E466X
ESCA	TCGA-JY-A6FB-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000475273.2,ENST00000356327.5,ENST00000342215.6,ENST00000498278.1	chr3	171452654:171452760:171453281:171453427:171455321:171455449,	171453282	171453427	171453400	171453400	Nonsense_Mutation	C	A	p.E106X
ESCA	TCGA-VR-A8EY-01	CENPO	ENST00000260662.1	chr2	25016346:25016370:25016720:25016834:25022543:25022663,25016332:25016389:25016720:25016834:25022543:25022663,	25016721	25016834	25016831	25016831	Nonsense_Mutation	G	T	p.G15X
ESCA	TCGA-VR-A8EY-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300528	21300528	Nonsense_Mutation	C	A	p.S353X
ESCA	TCGA-VR-A8EY-01	ABHD2	ENST00000562073.1,ENST00000569411.1,ENST00000565973.1,ENST00000352732.5,ENST00000355100.3	chr15	89659734:89659752:89694907:89695083:89698597:89698621,	89694908	89695083	89695080	89695080	Nonsense_Mutation	G	T	p.G123X
ESCA	TCGA-VR-A8EY-01	AP3M2	ENST00000517865.1,ENST00000521280.1,ENST00000396926.3,ENST00000174653.3,ENST00000517922.1,ENST00000530375.1,ENST00000521899.1,ENST00000518421.1	chr8	42019798:42019936:42022588:42022674:42022944:42023078,	42022589	42022674	42022606	42022606	Nonsense_Mutation	G	T	p.E201X
ESCA	TCGA-L5-A4OU-01	SAE1	ENST00000270225.7,ENST00000414294.2,ENST00000413379.3,ENST00000594144.1,ENST00000596995.1,ENST00000392776.3,ENST00000597808.1,ENST00000600706.1,ENST00000594526.1	chr19	47646750:47646862:47653458:47653632:47656154:47656257,	47653459	47653632	47653535	47653535	Nonsense_Mutation	T	A	p.L96X
ESCA	TCGA-JY-A93D-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105412337:105412432:105420937:105421303:105422831:105423017,	105420938	105421303	105421029	105421029	Nonsense_Mutation	G	T	p.S623X
ESCA	TCGA-JY-A93D-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48567831:48567941:48619819:48619970:48626749:48626884,	48619820	48619970	48619925	48619925	Nonsense_Mutation	T	G	p.Y4820X
ESCA	TCGA-JY-A93D-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100205103:100205285:100286425:100286560:100287308:100287482,	100286426	100286560	100286534	100286534	Nonsense_Mutation	C	A	p.S875X
ESCA	TCGA-JY-A93D-01	GRAP2	ENST00000544756.1	chr22	40351822:40351914:40356058:40356178:40361993:40362113,40343096:40343188:40356058:40356178:40361993:40362113,	40356059	40356178	40356069	40356069	Nonsense_Mutation	G	T	p.E61X
ESCA	TCGA-JY-A93D-01	GSK3B	ENST00000264235.8,ENST00000316626.5	chr3	119595259:119595355:119624601:119624699:119631550:119631657,	119624602	119624699	119624622	119624622	Nonsense_Mutation	G	A	p.Q265X
ESCA	TCGA-R6-A8WC-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75829065:75829189:75831017:75831157:75833045:75833120,	75831018	75831157	75831041	75831041	Nonsense_Mutation	C	A	p.E2355X
ESCA	TCGA-R6-A8WC-01	RPS6KA2	ENST00000265678.4,ENST00000481261.2,ENST00000510118.1,ENST00000405189.3,ENST00000503859.1	chr6	166833369:166833446:166836743:166836905:166843940:166844099,	166836744	166836905	166836896	166836896	Nonsense_Mutation	G	A	p.R539X
ESCA	TCGA-R6-A8WC-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91X
ESCA	TCGA-R6-A8WC-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749083	33749083	Nonsense_Mutation	C	T	p.W322X
ESCA	TCGA-R6-A8WC-01	MRPS5	ENST00000475895.1,ENST00000345084.5,ENST00000272418.2	chr2	95775660:95775786:95780810:95780948:95783609:95783690,	95780811	95780948	95780886	95780886	Nonsense_Mutation	G	A	p.Q68X
ESCA	TCGA-XP-A8T7-01	TSPAN11	ENST00000546076.1	chr12	31079837:31079939:31106914:31107009:31116760:31116952,31079681:31079730:31106914:31107009:31116760:31116952,	31106915	31107009	31106947	31106947	Nonsense_Mutation	C	T	p.Q8X
ESCA	TCGA-XP-A8T7-01	VRK3	ENST00000596814.1,ENST00000377011.2,ENST00000601341.1,ENST00000600137.1,ENST00000601912.1,ENST00000443401.2	chr19	50504046:50504111:50510825:50511083:50519280:50519420,	50510826	50511083	50510883	50510883	Nonsense_Mutation	G	A	p.R164X
ESCA	TCGA-XP-A8T7-01	BNIP3	ENST00000368636.4,ENST00000540159.1	chr10	133784141:133784291:133784367:133784474:133786537:133786622,	133784368	133784474	133784444	133784444	Nonsense_Mutation	C	A	p.E105X
ESCA	TCGA-L5-A4OX-01	VPS36	ENST00000378060.4	chr13	52992126:52992191:52997708:52997774:53000066:53000201,	52997709	52997774	52997736	52997736	Nonsense_Mutation	G	T	p.C271X
ESCA	TCGA-L5-A4OX-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56247745	56247745	Nonsense_Mutation	G	T	p.S88X
ESCA	TCGA-L5-A4OX-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876274	27876274	Nonsense_Mutation	C	A	p.G785X
ESCA	TCGA-IG-A3YA-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275106	114275106	Nonsense_Mutation	G	T	p.E1778X
ESCA	TCGA-IG-A3YA-01	FRMPD2	ENST00000374201.3,ENST00000305531.3,ENST00000407470.4	chr10	49431165:49431313:49440157:49440332:49444524:49444596,	49440158	49440332	49440312	49440312	Nonsense_Mutation	A	C	p.Y338X
ESCA	TCGA-IG-A3YA-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000469982.1,ENST00000377246.3	chr13	78187025:78187076:78188027:78188090:78191733:78191776,	78188028	78188090	78188089	78188089	Nonsense_Mutation	G	T	p.G484X
ESCA	TCGA-LN-A7HV-01	CYP2F1	ENST00000331105.2,ENST00000531409.1,ENST00000532164.2	chr19	41622359:41622522:41626251:41626401:41627362:41627523,	41626252	41626401	41626275	41626275	Nonsense_Mutation	C	T	p.R120X
ESCA	TCGA-VR-AA7D-01	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000329066.4,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3	chr2	1499778:1499969:1500366:1500537:1507719:1507851,	1500367	1500537	1500468	1500468	Nonsense_Mutation	G	T	p.E773X
ESCA	TCGA-VR-A8EP-01	RTEL1	ENST00000508582.2,ENST00000318100.4,ENST00000370018.3,ENST00000360203.5	chr20	62320407:62320485:62320854:62321001:62321102:62321218,	62320855	62321001	62320957	62320957	Nonsense_Mutation	C	T	p.Q685X
ESCA	TCGA-VR-A8EP-01	ANGPT1	ENST00000520052.1,ENST00000517746.1,ENST00000297450.3,ENST00000520734.1	chr8	108276448:108276579:108296909:108297076:108306163:108306265,	108296910	108297076	108296965	108296965	Nonsense_Mutation	G	A	p.R384X
ESCA	TCGA-IG-A3QL-01	SPAG9	ENST00000514613.1,ENST00000505173.1,ENST00000576492.1,ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1	chr17	49084629:49084687:49091592:49091714:49097519:49097619,	49091593	49091714	49091695	49091695	Nonsense_Mutation	C	A	p.E371X
ESCA	TCGA-LN-A49V-01	DDX3X	ENST00000441189.2,ENST00000399959.2,ENST00000478993.1,ENST00000542215.1	chrX	41196661:41196718:41198288:41198336:41200736:41200869,	41198289	41198336	41198321	41198321	Nonsense_Mutation	C	T	p.R46X
ESCA	TCGA-LN-A49V-01	TMCC3	ENST00000261226.4,ENST00000551457.1	chr12	94962344:94965513:94972169:94972305:94975397:94976314,	94972170	94972305	94972183	94972183	Nonsense_Mutation	G	T	p.S373X
ESCA	TCGA-L5-A8NR-01	C16orf58	ENST00000567994.1,ENST00000327237.2,ENST00000567673.1,ENST00000430477.2,ENST00000565128.1	chr16	31505056:31505108:31505186:31505257:31508169:31508271,	31505187	31505257	31505238	31505238	Nonsense_Mutation	G	T	p.W241X
ESCA	TCGA-L5-A8NR-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49947551:49948317:49948958:49949444:49950652:49950792,	49948959	49949444	49949384	49949384	Nonsense_Mutation	G	T	p.S160X
ESCA	TCGA-L5-A8NR-01	SUSD1	ENST00000374264.2,ENST00000374270.3	chr9	114804146:114804240:114820707:114820966:114825216:114825313,114814678:114814718:114820707:114820966:114825216:114825313,	114820708	114820966	114820861	114820861	Nonsense_Mutation	G	T	p.Y652X
ESCA	TCGA-L5-A8NR-01	N4BP2	ENST00000513269.1,ENST00000261435.6,ENST00000511480.1	chr4	40121551:40123929:40124746:40124832:40125779:40125825,	40124747	40124832	40124821	40124821	Nonsense_Mutation	G	T	p.E1425X
ESCA	TCGA-L5-A8NR-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50244138:50244222:50245518:50245611:50255881:50256043,	50245519	50245611	50245527	50245527	Nonsense_Mutation	C	A	p.E585X
ESCA	TCGA-L5-A8NR-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87614739:87614827:87622393:87622954:87637682:87637778,	87622394	87622954	87622936	87622936	Nonsense_Mutation	G	T	p.E393X
ESCA	TCGA-L5-A8NR-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616855	116616855	Nonsense_Mutation	G	T	p.Y447X
ESCA	TCGA-L5-A8NR-01	USP5	ENST00000229268.8,ENST00000389231.5	chr12	6965180:6965314:6965468:6965614:6965870:6966055,	6965469	6965614	6965536	6965536	Nonsense_Mutation	G	A	p.W169X
ESCA	TCGA-L5-A8NR-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56485366	56485366	Nonsense_Mutation	G	A	p.R1156X
ESCA	TCGA-L5-A8NR-01	POLR3A	ENST00000372371.3	chr10	79750866:79750925:79752954:79753125:79759738:79759876,	79752955	79753125	79753093	79753093	Nonsense_Mutation	G	T	p.C883X
ESCA	TCGA-L5-A8NR-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99969226	99969226	Nonsense_Mutation	C	A	p.S452X
ESCA	TCGA-L5-A8NR-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000530013.1,ENST00000529137.1,ENST00000448981.2	chr11	33790396:33790560:33792286:33792376:33795939:33796050,	33792287	33792376	33792357	33792357	Nonsense_Mutation	T	A	p.R42X
ESCA	TCGA-L5-A8NR-01	FBXO3	ENST00000530401.1	chr11	33790396:33790560:33792286:33792361:33795939:33796064,	33792287	33792361	33792357	33792357	Nonsense_Mutation	T	A	p.R42X
ESCA	TCGA-L5-A8NR-01	ACSL5	ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000479936.1,ENST00000354655.4	chr10	114154675:114154860:114158658:114158767:114164268:114164333,	114158659	114158767	114158683	114158683	Nonsense_Mutation	C	T	p.Q117X
ESCA	TCGA-L5-A8NR-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266205	41266205	Nonsense_Mutation	C	T	p.Q68X
ESCA	TCGA-L5-A8NR-01	SMUG1	ENST00000506595.1,ENST00000243112.5,ENST00000513838.1,ENST00000514685.1	chr12	54575254:54575431:54576287:54576407:54577439:54577717,	54576288	54576407	54576323	54576323	Nonsense_Mutation	G	A	p.R124X
ESCA	TCGA-L5-A8NW-01	TMTC1	ENST00000539277.1,ENST00000256062.5	chr12	29757110:29757232:29786079:29786269:29793492:29794171,29757151:29757232:29786079:29786269:29812812:29812916,29757110:29757232:29786079:29786269:29904598:29904805,	29786080	29786269	29786082	29786082	Nonsense_Mutation	T	A	p.K376X
ESCA	TCGA-L5-A8NW-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5268416:5268533:5271664:5271763:5276608:5276749,	5271665	5271763	5271755	5271755	Nonsense_Mutation	G	T	p.E626X
ESCA	TCGA-L5-A8NW-01	DHX34	ENST00000328771.4	chr19	47858295:47858607:47861122:47861377:47863224:47863327,	47861123	47861377	47861291	47861291	Nonsense_Mutation	G	T	p.E396X
ESCA	TCGA-LN-A4A1-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639256	17639256	Nonsense_Mutation	T	A	p.K203X
ESCA	TCGA-LN-A4A1-01	ITGA8	ENST00000378076.3	chr10	15561288:15561411:15573048:15573150:15590453:15590567,	15573049	15573150	15573108	15573108	Nonsense_Mutation	C	A	p.E975X
ESCA	TCGA-LN-A4A1-01	RGS4	ENST00000421743.2,ENST00000533019.1,ENST00000367906.3,ENST00000527809.1,ENST00000367909.6,ENST00000528938.1	chr1	163042594:163042656:163043245:163043412:163044110:163046381,	163043246	163043412	163043290	163043290	Nonsense_Mutation	G	T	p.E183X
ESCA	TCGA-LN-A4A1-01	MIEN1	ENST00000469568.1,ENST00000394231.3	chr17	37885408:37885858:37885937:37886014:37886446:37886544,	37885938	37886014	37886006	37886006	Nonsense_Mutation	C	A	p.E66X
ESCA	TCGA-IG-A3I8-01	MRPS15	ENST00000373116.5	chr1	36921787:36921979:36923523:36923582:36926292:36926374,	36923524	36923582	36923529	36923529	Nonsense_Mutation	G	A	p.R147X
ESCA	TCGA-IG-A3I8-01	DIAPH2	ENST00000373061.3,ENST00000324765.8,ENST00000355827.4,ENST00000373049.4	chrX	95993584:95993761:96013152:96013257:96136577:96136717,	96013153	96013257	96013192	96013192	Nonsense_Mutation	C	T	p.R128X
ESCA	TCGA-IG-A3I8-01	TCTN1	ENST00000490514.1,ENST00000397656.4,ENST00000377654.3,ENST00000495659.2,ENST00000551590.1,ENST00000397659.4,ENST00000464809.1	chr12	111072200:111072268:111072474:111072584:111074285:111074306,111070276:111070364:111072474:111072584:111074285:111074306,	111072475	111072584	111072534	111072534	Nonsense_Mutation	G	T	p.E258X
ESCA	TCGA-IG-A3I8-01	SLC12A8	ENST00000393469.4,ENST00000314584.7,ENST00000473262.1,ENST00000423114.2,ENST00000469902.1	chr3	124839442:124839530:124854512:124854626:124906080:124906272,124839442:124839530:124854512:124854626:124896586:124896808,	124854513	124854626	124854513	124854513	Nonsense_Mutation	C	A	p.G246X
ESCA	TCGA-L5-A4OS-01	POLR2A	ENST00000322644.6,ENST00000576553.1	chr17	7414833:7414907:7415129:7415333:7415476:7415663,	7415130	7415333	7415274	7415274	Nonsense_Mutation	C	T	p.R1416X
ESCA	TCGA-IG-A3Y9-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717813	5717813	Nonsense_Mutation	G	A	p.W117X
ESCA	TCGA-IG-A3Y9-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145538217:145538307:145538723:145538808:145538979:145539093,	145538724	145538808	145538788	145538788	Nonsense_Mutation	G	T	p.E967X
ESCA	TCGA-IG-A3Y9-01	ATP2A3	ENST00000359983.3	chr17	3828689:3828735:3831274:3831332:3831533:3831621,3828689:3828735:3831274:3831332:3831956:3832074,3828689:3828735:3831274:3831332:3831520:3831606,	3831275	3831332	3831294	3831294	Nonsense_Mutation	G	C	p.S1036X
ESCA	TCGA-IG-A3Y9-01	TBC1D19	ENST00000264866.4,ENST00000502873.1,ENST00000511789.1	chr4	26741485:26741595:26744129:26744221:26750032:26750148,	26744130	26744221	26744169	26744169	Nonsense_Mutation	C	T	p.Q423X
ESCA	TCGA-IG-A3Y9-01	TIAM1	ENST00000541036.1,ENST00000286827.3	chr21	32624057:32624505:32638325:32639299:32649047:32649083,	32638326	32639299	32638328	32638328	Nonsense_Mutation	G	A	p.Q321X
ESCA	TCGA-IG-A3Y9-01	REG1A	ENST00000233735.1	chr2	79349164:79349251:79349966:79350078:79350273:79350545,	79349967	79350078	79349978	79349978	Nonsense_Mutation	G	A	p.W111X
ESCA	TCGA-L5-A8NV-01	UBE2L3	ENST00000496722.1	chr22	21922025:21922060:21947149:21947245:21965145:21965332,21922018:21922666:21947149:21947245:21965145:21965332,	21947150	21947245	21947227	21947227	Nonsense_Mutation	G	A	p.W93X
ESCA	TCGA-L5-A8NV-01	RPTOR	ENST00000570891.1,ENST00000537330.1,ENST00000306801.3,ENST00000574767.1,ENST00000577161.1,ENST00000544334.2	chr17	78681640:78681799:78704359:78704506:78727809:78727904,	78704360	78704506	78704474	78704474	Nonsense_Mutation	C	T	p.Q208X
ESCA	TCGA-L5-A8NV-01	MEF2C	ENST00000506716.1,ENST00000513252.1,ENST00000424173.2	chr5	88047682:88047860:88056804:88056942:88100414:88100618,	88056805	88056942	88056856	88056856	Nonsense_Mutation	G	T	p.Y135X
ESCA	TCGA-L5-A8NV-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186666039	186666039	Nonsense_Mutation	G	A	p.W4091X
ESCA	TCGA-L5-A8NV-01	ORC3	ENST00000546266.1	chr6	88311501:88311599:88313101:88313246:88315634:88315739,88304070:88304125:88313101:88313246:88315634:88315739,	88313102	88313246	88313147	88313147	Nonsense_Mutation	G	T	p.E75X
ESCA	TCGA-L5-A8NV-01	FAM208A	ENST00000355628.5,ENST00000493960.2	chr3	56705627:56705720:56707607:56707753:56716703:56717045,	56707608	56707753	56707745	56707745	Nonsense_Mutation	G	A	p.Q114X
ESCA	TCGA-L5-A8NV-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
ESCA	TCGA-L5-A8NV-01	ABCA1	ENST00000423487.2,ENST00000374736.3,ENST00000374733.1	chr9	107645319:107645438:107646707:107646849:107651382:107651476,	107646708	107646849	107646736	107646736	Nonsense_Mutation	C	A	p.G92X
ESCA	TCGA-LN-A49K-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190418	17190418	Nonsense_Mutation	C	A	p.E291X
ESCA	TCGA-IG-A4P3-01	LRGUK	ENST00000285928.2	chr7	133933702:133933828:133943008:133943157:133948596:133949343,	133943009	133943157	133943142	133943142	Nonsense_Mutation	G	T	p.E778X
ESCA	TCGA-IG-A4P3-01	PDCD6IP	ENST00000457054.2	chr3	33867971:33868072:33870329:33870461:33877535:33877664,	33870330	33870461	33870405	33870405	Nonsense_Mutation	C	T	p.Q265X
ESCA	TCGA-IG-A4P3-01	PDCD6IP	ENST00000307296.3	chr3	33867971:33868072:33870344:33870461:33877535:33877664,	33870345	33870461	33870405	33870405	Nonsense_Mutation	C	T	p.Q265X
ESCA	TCGA-IG-A4P3-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48511126:48511196:48520632:48520751:48522672:48522760,	48520633	48520751	48520703	48520703	Nonsense_Mutation	C	G	p.S4349X
ESCA	TCGA-IG-A4P3-01	EPS8L2	ENST00000530636.1,ENST00000524474.1,ENST00000533256.1,ENST00000526909.1,ENST00000533816.1,ENST00000526198.1,ENST00000318562.8	chr11	721564:721691:721902:721991:722400:722500,721564:721691:721902:721991:722090:722165,	721903	721991	721938	721938	Nonsense_Mutation	G	T	p.E311X
ESCA	TCGA-IG-A4P3-01	PTP4A1	ENST00000370651.3	chr6	64288802:64288933:64289161:64289236:64289961:64292331,	64289162	64289236	64289199	64289199	Nonsense_Mutation	G	T	p.G123X
ESCA	TCGA-VR-A8ER-01	POLD2	ENST00000452185.1	chr7	44157541:44157663:44161432:44161881:44163109:44163129,	44161433	44161881	44161677	44161677	Nonsense_Mutation	C	T	p.W27X
ESCA	TCGA-VR-A8ER-01	POLD2	ENST00000496539.1,ENST00000470867.1	chr7	44157541:44157663:44161432:44161708:44163109:44163129,	44161433	44161708	44161677	44161677	Nonsense_Mutation	C	T	p.W27X
ESCA	TCGA-VR-A8ER-01	IL1R2	ENST00000457817.1,ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102626183:102626288:102632332:102632513:102636099:102636274,	102632333	102632513	102632364	102632364	Nonsense_Mutation	G	T	p.E122X
ESCA	TCGA-VR-A8ER-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816503	203816503	Nonsense_Mutation	G	T	p.E412X
ESCA	TCGA-VR-A8ER-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603468	111603468	Nonsense_Mutation	G	T	p.G209X
ESCA	TCGA-LN-A7HX-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579102	82579102	Nonsense_Mutation	G	T	p.S3601X
ESCA	TCGA-LN-A7HX-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345270	119345270	Nonsense_Mutation	C	A	p.E290X
ESCA	TCGA-LN-A7HX-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672917	151672917	Nonsense_Mutation	G	T	p.E1131X
ESCA	TCGA-LN-A7HX-01	ARV1	ENST00000435927.1,ENST00000310256.2,ENST00000450711.1	chr1	231114891:231115025:231124065:231124185:231125855:231126009,	231124066	231124185	231124099	231124099	Nonsense_Mutation	G	T	p.E70X
ESCA	TCGA-LN-A7HX-01	COL1A2	ENST00000481570.1	chr7	94055309:94055363:94055734:94056373:94056499:94056571,	94055735	94056373	94055774	94055774	Nonsense_Mutation	G	T	p.E1013X
ESCA	TCGA-LN-A7HX-01	C6	ENST00000337836.5,ENST00000263413.3	chr5	41195893:41196035:41199869:41200014:41201659:41201816,	41199870	41200014	41199895	41199895	Nonsense_Mutation	G	T	p.C140X
ESCA	TCGA-LN-A7HX-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778244	84778244	Nonsense_Mutation	G	T	p.E57X
ESCA	TCGA-LN-A7HX-01	UBLCP1	ENST00000296786.6	chr5	158696915:158697007:158697367:158697453:158697535:158697651,	158697368	158697453	158697440	158697440	Nonsense_Mutation	G	T	p.E107X
ESCA	TCGA-LN-A7HX-01	SLC41A3	ENST00000513723.1	chr3	125769785:125769893:125775200:125775356:125786789:125787023,	125775201	125775356	125775273	125775273	Nonsense_Mutation	G	T	p.C41X
ESCA	TCGA-L5-A8NN-01	COX4I1	ENST00000561569.1,ENST00000563774.1	chr16	85833313:85833358:85834789:85834884:85838542:85838598,	85834790	85834884	85834875	85834875	Nonsense_Mutation	C	T	p.R22X
ESCA	TCGA-L5-A8NN-01	COX4I1	ENST00000568339.1,ENST00000253452.2,ENST00000570123.1,ENST00000564544.1,ENST00000568794.1	chr16	85833313:85833358:85834810:85834884:85838542:85838598,	85834811	85834884	85834875	85834875	Nonsense_Mutation	C	T	p.R22X
ESCA	TCGA-L5-A8NN-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099625	168099625	Nonsense_Mutation	C	T	p.Q575X
ESCA	TCGA-LN-A49U-01	ACSS2	ENST00000477932.1,ENST00000253382.5,ENST00000491533.1,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33508341:33508512:33508808:33508942:33509132:33509221,	33508809	33508942	33508850	33508850	Nonsense_Mutation	G	A	p.W408X
ESCA	TCGA-LN-A49U-01	C16orf89	ENST00000315997.5,ENST00000422873.1,ENST00000350219.4,ENST00000472572.3,ENST00000592343.1	chr16	5105246:5105351:5106053:5106189:5108493:5108611,	5106054	5106189	5106133	5106133	Nonsense_Mutation	G	T	p.C228X
ESCA	TCGA-LN-A49U-01	ZNF451	ENST00000357489.3,ENST00000370706.4	chr6	57017018:57017149:57018658:57018845:57025881:57025950,	57018659	57018845	57018677	57018677	Nonsense_Mutation	C	T	p.Q968X
ESCA	TCGA-LN-A49U-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579315	Nonsense_Mutation	G	T	p.C124X
ESCA	TCGA-V5-AASW-01	USP30	ENST00000392784.2,ENST00000536723.1,ENST00000257548.5	chr12	109494486:109494596:109495730:109495913:109505328:109505432,	109495731	109495913	109495856	109495856	Nonsense_Mutation	C	T	p.Q107X
ESCA	TCGA-L5-A4OG-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91X
ESCA	TCGA-L5-A4OG-01	CDK19	ENST00000323817.3,ENST00000368911.3,ENST00000457688.1,ENST00000463016.1	chr6	110988636:110988777:110991633:110991744:111067328:111067404,	110991634	110991744	110991738	110991738	Nonsense_Mutation	G	A	p.R71X
ESCA	TCGA-L5-A4OG-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107956647	107956647	Nonsense_Mutation	C	T	p.R867X
ESCA	TCGA-LN-A9FO-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204X
ESCA	TCGA-LN-A9FO-01	NUB1	ENST00000483358.1,ENST00000468404.1,ENST00000413040.2,ENST00000355851.4,ENST00000470229.1,ENST00000566856.1,ENST00000568733.1,ENST00000470316.1	chr7	151042433:151042552:151046158:151046326:151048509:151048568,	151046159	151046326	151046222	151046222	Nonsense_Mutation	G	T	p.E85X
ESCA	TCGA-LN-A9FO-01	POMZP3	ENST00000275569.4,ENST00000310842.4	chr7	76247828:76247932:76254838:76255000:76255316:76255444,76247499:76247617:76254838:76255000:76255316:76255444,	76254839	76255000	76254993	76254993	Nonsense_Mutation	G	A	p.Q25X
ESCA	TCGA-LN-A9FO-01	FGD4	ENST00000534526.2,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000493087.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32777909:32778002:32778587:32778713:32786482:32786623,	32778588	32778713	32778681	32778681	Nonsense_Mutation	C	T	p.R577X
ESCA	TCGA-2H-A9GK-01	SLAMF9	ENST00000368093.3	chr1	159921281:159921656:159922051:159922324:159923098:159923439,	159922052	159922324	159922241	159922241	Nonsense_Mutation	C	A	p.E159X
ESCA	TCGA-2H-A9GK-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
ESCA	TCGA-2H-A9GK-01	LYPD6	ENST00000334166.4,ENST00000409381.1	chr2	150305562:150305661:150325158:150325289:150327196:150327609,	150325159	150325289	150325179	150325179	Nonsense_Mutation	C	T	p.Q80X
ESCA	TCGA-2H-A9GK-01	MZF1	ENST00000599369.1,ENST00000594234.1,ENST00000215057.2,ENST00000594108.1	chr19	59080882:59080953:59081710:59081894:59082360:59082796,	59081711	59081894	59081731	59081731	Nonsense_Mutation	G	C	p.S187X
ESCA	TCGA-L5-A8NM-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748969	43748969	Nonsense_Mutation	C	A	p.E613X
ESCA	TCGA-L5-A8NM-01	IL6	ENST00000406575.1,ENST00000404625.1,ENST00000426291.1,ENST00000258743.5	chr7	22766858:22766900:22767062:22767253:22768311:22768425,	22767063	22767253	22767197	22767197	Nonsense_Mutation	C	T	p.R52X
ESCA	TCGA-L5-A8NM-01	IL6	ENST00000401630.3	chr7	22766858:22766900:22767131:22767253:22768311:22768425,	22767132	22767253	22767197	22767197	Nonsense_Mutation	C	T	p.R52X
ESCA	TCGA-L5-A8NM-01	POU5F1	ENST00000441888.3,ENST00000513407.1,ENST00000259915.8,ENST00000512818.1,ENST00000606567.1,ENST00000471529.2	chr6	31132128:31132644:31132904:31133063:31133347:31133478,	31132905	31133063	31132949	31132949	Nonsense_Mutation	G	A	p.Q258X
ESCA	TCGA-L5-A8NM-01	CTRL	ENST00000574481.1,ENST00000571044.1	chr16	67964822:67964902:67965000:67965104:67965703:67965765,	67965001	67965104	67965003	67965003	Nonsense_Mutation	G	A	p.Q52X
ESCA	TCGA-L5-A8NM-01	ITGBL1	ENST00000376180.3	chr13	102106233:102106451:102220049:102220196:102227774:102227897,	102220050	102220196	102220154	102220154	Nonsense_Mutation	C	T	p.Q141X
ESCA	TCGA-L5-A8NM-01	DHRS1	ENST00000559483.1,ENST00000288111.7,ENST00000561273.1,ENST00000558340.1,ENST00000396813.1	chr14	24765714:24765794:24765943:24766087:24768162:24768336,	24765944	24766087	24766024	24766024	Nonsense_Mutation	G	A	p.R72X
ESCA	TCGA-L5-A8NM-01	CD22	ENST00000601732.1	chr19	35820114:35820133:35823555:35823827:35827051:35827244,	35823556	35823827	35823799	35823799	Nonsense_Mutation	G	A	p.W128X
ESCA	TCGA-L5-A8NM-01	CD22	ENST00000419549.2	chr19	35820114:35820133:35823455:35823827:35827051:35827244,	35823456	35823827	35823799	35823799	Nonsense_Mutation	G	A	p.W128X
ESCA	TCGA-L5-A8NM-01	CD22	ENST00000600905.1	chr19	35820114:35820133:35823496:35823827:35826938:35826945,	35823497	35823827	35823799	35823799	Nonsense_Mutation	G	A	p.W128X
ESCA	TCGA-L5-A8NM-01	CD22	ENST00000596492.1	chr19	35820114:35820133:35822921:35823827:35826938:35826945,	35822922	35823827	35823799	35823799	Nonsense_Mutation	G	A	p.W128X
ESCA	TCGA-L5-A8NM-01	RRM2B	ENST00000251810.3,ENST00000522368.1,ENST00000395912.2	chr8	103231041:103231175:103236273:103236368:103237112:103237246,	103236274	103236368	103236304	103236304	Nonsense_Mutation	G	A	p.R246X
ESCA	TCGA-L5-A8NM-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58117515	58117515	Nonsense_Mutation	C	T	p.R208X
ESCA	TCGA-L5-A8NM-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82578944	82578944	Nonsense_Mutation	G	A	p.Q3654X
ESCA	TCGA-L5-A8NM-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6080879:6080950:6093353:6093527:6138192:6138295,	6093354	6093527	6093420	6093420	Nonsense_Mutation	G	T	p.S436X
ESCA	TCGA-L5-A8NM-01	ZCWPW1	ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100014688:100014806:100016733:100016812:100017252:100017436,	100016734	100016812	100016812	100016812	Nonsense_Mutation	C	A	p.E95X
ESCA	TCGA-L5-A8NM-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135777991:135778174:135779037:135779204:135779797:135779841,	135779038	135779204	135779172	135779172	Nonsense_Mutation	G	A	p.R692X
ESCA	TCGA-L5-A8NM-01	PIGR	ENST00000356495.4	chr1	207110986:207111096:207112463:207112808:207113833:207113929,	207112464	207112808	207112680	207112680	Nonsense_Mutation	G	A	p.Q58X
ESCA	TCGA-L7-A56G-01	DDR1	ENST00000513514.1	chr6	30861131:30861200:30862364:30862448:30864790:30864823,	30862365	30862448	30862388	30862388	Nonsense_Mutation	C	T	p.Q503X
ESCA	TCGA-L7-A56G-01	DDR1	ENST00000465966.1	chr6	30861131:30861200:30862282:30862448:30864790:30864823,	30862283	30862448	30862388	30862388	Nonsense_Mutation	C	T	p.Q503X
ESCA	TCGA-L5-A88Y-01	MTHFD1	ENST00000557370.2,ENST00000545908.1,ENST00000556284.1,ENST00000216605.8	chr14	64916328:64916340:64920471:64920579:64921440:64921593,	64920472	64920579	64920550	64920550	Nonsense_Mutation	C	T	p.Q846X
ESCA	TCGA-LN-A9FP-01	STOML3	ENST00000423210.1,ENST00000379631.4	chr13	39546648:39546731:39550676:39550749:39550830:39550934,	39550677	39550749	39550710	39550710	Nonsense_Mutation	C	A	p.G66X
ESCA	TCGA-LN-A9FP-01	SLC4A8	ENST00000358657.3,ENST00000535225.2,ENST00000604314.1,ENST00000453097.2,ENST00000551071.1,ENST00000394856.1,ENST00000514353.3,ENST00000319957.6	chr12	51864175:51864309:51865070:51865316:51868125:51868231,	51865071	51865316	51865176	51865176	Nonsense_Mutation	C	G	p.Y588X
ESCA	TCGA-LN-A9FP-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294X
ESCA	TCGA-LN-A9FP-01	CELF3	ENST00000420342.1,ENST00000290583.4	chr1	151679144:151679210:151679620:151679770:151679982:151680124,	151679621	151679770	151679697	151679697	Nonsense_Mutation	G	C	p.Y282X
ESCA	TCGA-LN-A9FP-01	WDR62	ENST00000401500.2,ENST00000270301.7	chr19	36572334:36572472:36573964:36574143:36575554:36575646,	36573965	36574143	36573985	36573985	Nonsense_Mutation	C	G	p.Y464X
ESCA	TCGA-LN-A9FP-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766862	53766862	Nonsense_Mutation	G	T	p.E852X
ESCA	TCGA-LN-A9FP-01	PHACTR1	ENST00000457702.2,ENST00000415087.1,ENST00000332995.7,ENST00000379350.1	chr6	13206046:13206368:13228047:13228295:13230268:13230425,	13228048	13228295	13228205	13228205	Nonsense_Mutation	G	T	p.E382X
ESCA	TCGA-LN-A9FP-01	CACHD1	ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65095046:65095164:65098281:65098426:65099726:65099943,	65098282	65098426	65098370	65098370	Nonsense_Mutation	C	T	p.Q194X
ESCA	TCGA-L5-A88W-01	ANLN	ENST00000428612.1,ENST00000265748.2,ENST00000457743.1,ENST00000396068.2	chr7	36478812:36478899:36483363:36483471:36489273:36489287,	36483364	36483471	36483373	36483373	Nonsense_Mutation	G	T	p.E994X
ESCA	TCGA-X8-AAAR-01	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1	chr19	55501389:55501560:55501869:55502040:55505636:55505807,	55501870	55502040	55502000	55502000	Nonsense_Mutation	G	T	p.E890X
ESCA	TCGA-X8-AAAR-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342X
ESCA	TCGA-X8-AAAR-01	ATP11B	ENST00000323116.5,ENST00000498086.1	chr3	182575665:182575816:182576949:182577147:182583243:182583486,	182576950	182577147	182577031	182577031	Nonsense_Mutation	G	T	p.E362X
ESCA	TCGA-LN-A9FR-01	RICTOR	ENST00000511516.1,ENST00000357387.3,ENST00000296782.5	chr5	38942325:38942480:38942934:38943073:38944547:38944671,	38942935	38943073	38942960	38942960	Nonsense_Mutation	A	C	p.L1676X
ESCA	TCGA-LN-A49X-01	CCDC84	ENST00000334418.1	chr11	118881473:118881540:118881930:118881993:118882648:118882713,	118881931	118881993	118881949	118881949	Nonsense_Mutation	G	T	p.E157X
ESCA	TCGA-LN-A49X-01	CCDC84	ENST00000580556.1,ENST00000528088.1,ENST00000524670.1,ENST00000526463.1,ENST00000532132.1	chr11	118881473:118881540:118881930:118882021:118882648:118882713,	118881931	118882021	118881949	118881949	Nonsense_Mutation	G	T	p.E157X
ESCA	TCGA-LN-A49X-01	CTDP1	ENST00000075430.7	chr18	77488906:77489069:77496354:77496521:77513651:77514501,77477809:77478016:77496354:77496521:77513651:77514501,	77496355	77496521	77496418	77496418	Nonsense_Mutation	C	T	p.Q882X
ESCA	TCGA-LN-A49X-01	CCDC124	ENST00000597436.1	chr19	18045904:18046000:18047218:18047388:18053464:18053654,	18047219	18047388	18047332	18047332	Nonsense_Mutation	G	T	p.E35X
ESCA	TCGA-LN-A49X-01	LUM	ENST00000546642.1	chr12	91497936:91498096:91501894:91502464:91505174:91505216,	91501895	91502464	91502240	91502240	Nonsense_Mutation	C	A	p.E173X
ESCA	TCGA-LN-A4MQ-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5756346:5756397:5760663:5760803:5764954:5765069,	5760664	5760803	5760759	5760759	Nonsense_Mutation	G	A	p.R517X
ESCA	TCGA-LN-A4MQ-01	TPX2	ENST00000340513.4,ENST00000300403.6	chr20	30382204:30382351:30385206:30385318:30386167:30386355,	30385207	30385318	30385276	30385276	Nonsense_Mutation	C	T	p.Q635X
ESCA	TCGA-LN-A4MQ-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717762	89717762	Nonsense_Mutation	A	T	p.K263X
ESCA	TCGA-LN-A4MQ-01	CCDC38	ENST00000549876.1,ENST00000344280.3	chr12	96266139:96266238:96271988:96272124:96273421:96273449,	96271989	96272124	96271999	96271999	Nonsense_Mutation	G	C	p.S423X
ESCA	TCGA-L5-A88S-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226027605:226027738:226030066:226030175:226032198:226032324,	226030067	226030175	226030147	226030147	Nonsense_Mutation	C	T	p.R338X
ESCA	TCGA-L5-A88S-01	NDUFAF3	ENST00000326925.6,ENST00000480392.1	chr3	49059553:49059654:49059778:49059971:49060134:49060201,	49059779	49059971	49059963	49059963	Nonsense_Mutation	C	T	p.Q88X
ESCA	TCGA-L5-A88S-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317X
ESCA	TCGA-L5-A88S-01	ERCC8	ENST00000543101.1,ENST00000426742.2,ENST00000381118.3,ENST00000462279.1,ENST00000265038.5	chr5	60170046:60170510:60183266:60183347:60186715:60186913,	60183267	60183347	60183321	60183321	Nonsense_Mutation	G	T	p.C356X
ESCA	TCGA-Z6-A8JD-01	SNRNP27	ENST00000450162.2,ENST00000409116.1	chr2	70121095:70121150:70122225:70122346:70123567:70123680,	70122226	70122346	70122273	70122273	Nonsense_Mutation	C	T	p.R28X
ESCA	TCGA-Z6-A8JD-01	SWAP70	ENST00000534562.1,ENST00000524817.1,ENST00000447399.2,ENST00000318950.6	chr11	9754075:9754257:9759759:9759867:9761727:9761889,	9759760	9759867	9759811	9759811	Nonsense_Mutation	C	T	p.Q378X
ESCA	TCGA-Z6-A8JD-01	ELMOD3	ENST00000418268.1	chr2	85583039:85583656:85584089:85584375:85589308:85589383,	85584090	85584375	85584328	85584328	Nonsense_Mutation	G	T	p.E3X
ESCA	TCGA-Z6-A8JD-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87680094:87680226:87683879:87684343:87685745:87685877,	87683880	87684343	87684273	87684273	Nonsense_Mutation	C	G	p.S1316X
ESCA	TCGA-Z6-A8JD-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000559711.1,ENST00000559257.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000539772.1,ENST00000538686.2,ENST00000561326.1,ENST00000559192.1,ENST00000540797.1	chr15	63855093:63855207:63862631:63862778:63866244:63866351,	63862632	63862778	63862741	63862741	Nonsense_Mutation	G	T	p.E291X
ESCA	TCGA-Z6-A8JD-01	RC3H1	ENST00000258349.4,ENST00000367696.2,ENST00000367694.2	chr1	173939642:173939755:173941646:173941765:173947625:173947758,	173941647	173941765	173941652	173941652	Nonsense_Mutation	G	A	p.Q406X
ESCA	TCGA-Z6-A8JD-01	DHODH	ENST00000574309.1,ENST00000219240.4	chr16	72042676:72042684:72045948:72046161:72048371:72048571,	72045949	72046161	72046063	72046063	Nonsense_Mutation	C	T	p.Q46X
ESCA	TCGA-Z6-A8JD-01	STK11	ENST00000585465.1	chr19	1223146:1223171:1223636:1226662:1227591:1227856,	1223637	1226662	1226530	1226530	Nonsense_Mutation	G	T	p.E396X
ESCA	TCGA-Z6-A8JD-01	STK11	ENST00000586243.1	chr19	1223146:1223171:1226457:1226662:1227591:1227856,	1226458	1226662	1226530	1226530	Nonsense_Mutation	G	T	p.E396X
ESCA	TCGA-Z6-A8JD-01	STK11	ENST00000326873.7	chr19	1223146:1223171:1226452:1226662:1227591:1227856,	1226453	1226662	1226530	1226530	Nonsense_Mutation	G	T	p.E396X
ESCA	TCGA-JY-A6FG-01	UTRN	ENST00000432686.1,ENST00000367526.4,ENST00000417142.1,ENST00000367524.3,ENST00000367545.3	chr6	145118959:145119126:145124171:145124283:145142017:145142154,	145124172	145124283	145124230	145124230	Nonsense_Mutation	C	T	p.R3102X
ESCA	TCGA-S8-A6BV-01	STAMBP	ENST00000424659.1	chr2	74056093:74056123:74057971:74058186:74071939:74072015,74056157:74056197:74057971:74058186:74071939:74072015,	74057972	74058186	74058068	74058068	Nonsense_Mutation	G	T	p.E29X
ESCA	TCGA-S8-A6BV-01	SBF1	ENST00000380817.3,ENST00000348911.6,ENST00000470434.1,ENST00000390679.3	chr22	50893444:50893571:50893652:50893838:50893909:50894011,	50893653	50893838	50893823	50893823	Nonsense_Mutation	G	A	p.Q1462X
ESCA	TCGA-S8-A6BV-01	ETNK1	ENST00000266517.4,ENST00000538218.1	chr12	22813996:22814139:22824205:22824289:22826433:22826594,	22824206	22824289	22824229	22824229	Nonsense_Mutation	G	T	p.E331X
ESCA	TCGA-IG-A97H-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11758413:11759045:11761030:11761133:11765279:11765438,	11761031	11761133	11761097	11761097	Nonsense_Mutation	G	T	p.E1371X
ESCA	TCGA-IG-A97H-01	MCMDC2	ENST00000541540.1,ENST00000492775.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3,ENST00000415737.1	chr8	67791049:67791154:67793083:67793209:67795991:67796229,	67793084	67793209	67793086	67793086	Nonsense_Mutation	G	T	p.E238X
ESCA	TCGA-V5-A7RB-01	GUCY1A2	ENST00000347596.2,ENST00000526355.2	chr11	106558100:106558482:106579237:106579392:106647164:106647308,	106579238	106579392	106579283	106579283	Nonsense_Mutation	G	T	p.S680X
ESCA	TCGA-IG-A97I-01	DIS3L	ENST00000530537.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66607373:66607553:66610786:66610956:66612908:66613070,	66610787	66610956	66610849	66610849	Nonsense_Mutation	G	T	p.E353X
ESCA	TCGA-IG-A97I-01	GRAMD1B	ENST00000529750.1,ENST00000534764.1,ENST00000532581.1,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123464789:123464874:123465442:123465546:123466649:123466745,	123465443	123465546	123465506	123465506	Nonsense_Mutation	G	A	p.W135X
ESCA	TCGA-IG-A97I-01	TMEM14C	ENST00000466421.1,ENST00000467415.1,ENST00000229563.5,ENST00000541412.1	chr6	10726139:10726241:10728872:10728960:10730847:10730980,	10728873	10728960	10728902	10728902	Nonsense_Mutation	G	T	p.G77X
ESCA	TCGA-L5-A8NK-01	EFCAB14	ENST00000484461.1,ENST00000371933.3	chr1	47152455:47152542:47154024:47154216:47155258:47155308,	47154025	47154216	47154135	47154135	Nonsense_Mutation	C	A	p.E293X
ESCA	TCGA-L5-A8NK-01	ANXA5	ENST00000506395.1	chr4	122599048:122599105:122599506:122599649:122602825:122602916,	122599507	122599649	122599640	122599640	Nonsense_Mutation	G	C	p.S135X
ESCA	TCGA-L5-A8NK-01	ANXA5	ENST00000296511.5,ENST00000511552.1,ENST00000501272.2	chr4	122599048:122599105:122599569:122599649:122602825:122602916,	122599570	122599649	122599640	122599640	Nonsense_Mutation	G	C	p.S135X
ESCA	TCGA-L5-A8NK-01	C4orf36	ENST00000504008.1,ENST00000295898.3,ENST00000506308.1,ENST00000473559.1	chr4	87809023:87809046:87809273:87809428:87811200:87811291,87809023:87809046:87809273:87809428:87812608:87812746,	87809274	87809428	87809349	87809349	Nonsense_Mutation	C	A	p.E49X
ESCA	TCGA-L5-A8NK-01	CFH	ENST00000466229.1,ENST00000367429.4,ENST00000470918.1	chr1	196706037:196706136:196706604:196706790:196709748:196709922,	196706605	196706790	196706631	196706631	Nonsense_Mutation	C	T	p.Q875X
ESCA	TCGA-M9-A5M8-01	SLC24A1	ENST00000399033.4,ENST00000261892.6	chr15	65916418:65918308:65930465:65930519:65931932:65932041,	65930466	65930519	65930493	65930493	Nonsense_Mutation	G	T	p.E640X
ESCA	TCGA-JY-A6FH-01	ATG16L1	ENST00000392020.4,ENST00000485623.1,ENST00000474148.1,ENST00000479942.1,ENST00000417017.1,ENST00000392018.1,ENST00000392017.4	chr2	234160359:234160588:234164747:234164841:234178647:234178713,234160359:234160588:234164747:234164841:234171775:234171881,	234164748	234164841	234164834	234164834	Nonsense_Mutation	G	T	p.E68X
ESCA	TCGA-JY-A6FH-01	TMEM145	ENST00000598766.1,ENST00000301204.3	chr19	42821021:42821115:42821860:42822033:42824468:42824589,	42821861	42822033	42821921	42821921	Nonsense_Mutation	G	T	p.G321X
ESCA	TCGA-JY-A6FH-01	FTO	ENST00000471389.1	chr16	53844051:53844129:53859775:53860403:53878066:53878210,	53859776	53860403	53860211	53860211	Nonsense_Mutation	G	T	p.G187X
ESCA	TCGA-JY-A6FH-01	ATG13	ENST00000529655.1,ENST00000525009.1,ENST00000359513.4,ENST00000526508.1,ENST00000434074.1,ENST00000524625.1,ENST00000451945.1,ENST00000312040.4,ENST00000530500.1,ENST00000528494.1	chr11	46690048:46690126:46690343:46690460:46690953:46690991,	46690344	46690460	46690365	46690365	Nonsense_Mutation	G	T	p.E451X
ESCA	TCGA-JY-A6FH-01	RHBDD1	ENST00000392062.2,ENST00000341329.3,ENST00000491490.1,ENST00000493526.1	chr2	227773537:227773594:227778923:227779067:227860146:227860391,	227778924	227779067	227779064	227779064	Nonsense_Mutation	C	T	p.R285X
ESCA	TCGA-JY-A6FH-01	SAMD4B	ENST00000598913.1,ENST00000314471.6,ENST00000596368.1	chr19	39847455:39847729:39860294:39860765:39866289:39866320,	39860295	39860765	39860549	39860549	Nonsense_Mutation	G	T	p.E151X
ESCA	TCGA-Q9-A6FU-01	ITCH	ENST00000483727.1,ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33045194:33045279:33049897:33050026:33057852:33057925,	33049898	33050026	33049899	33049899	Nonsense_Mutation	C	T	p.Q474X
ESCA	TCGA-Q9-A6FU-01	UROD	ENST00000491300.1,ENST00000434478.1,ENST00000486699.1,ENST00000246337.4,ENST00000478467.1,ENST00000462688.1,ENST00000469548.1	chr1	45479265:45479463:45479580:45479742:45480110:45480117,	45479581	45479742	45479618	45479618	Nonsense_Mutation	C	G	p.S171X
ESCA	TCGA-Z6-AAPN-01	PDS5A	ENST00000303538.8	chr4	39881347:39881453:39891868:39891984:39900008:39900148,	39891869	39891984	39891930	39891930	Nonsense_Mutation	C	A	p.E609X
ESCA	TCGA-Z6-AAPN-01	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41506169:41508164:41515056:41515506:41517087:41517280,	41515057	41515506	41515340	41515340	Nonsense_Mutation	G	A	p.Q325X
ESCA	TCGA-Z6-AAPN-01	UPF3A	ENST00000475218.2,ENST00000375299.3,ENST00000351487.5	chr13	115064314:115064475:115067205:115067500:115070263:115070424,	115067206	115067500	115067486	115067486	Nonsense_Mutation	C	T	p.R430X
ESCA	TCGA-Z6-AAPN-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000447398.1,ENST00000449767.1,ENST00000443864.2	chr7	44646237:44646252:44663915:44664164:44684925:44685117,	44663916	44664164	44664045	44664045	Nonsense_Mutation	C	T	p.Q35X
ESCA	TCGA-Z6-AAPN-01	PLOD1	ENST00000429000.2,ENST00000376369.3,ENST00000485046.1,ENST00000196061.4	chr1	12010413:12010577:12012679:12012792:12014886:12014950,	12012680	12012792	12012751	12012751	Nonsense_Mutation	C	T	p.Q180X
ESCA	TCGA-Z6-AAPN-01	CRHR1	ENST00000339069.5,ENST00000577353.1,ENST00000352855.5,ENST00000293493.7,ENST00000398285.3,ENST00000314537.5,ENST00000347197.5	chr17	43907459:43907580:43907782:43907936:43908245:43908306,	43907783	43907936	43907863	43907863	Nonsense_Mutation	C	A	p.Y241X
ESCA	TCGA-Z6-AAPN-01	HNRNPH1	ENST00000503105.1	chr5	179045239:179045324:179047892:179048036:179048242:179048336,179046315:179046408:179047892:179048036:179048242:179048336,179044817:179044912:179047892:179048036:179048242:179048336,	179047893	179048036	179047895	179047895	Nonsense_Mutation	G	C	p.S132X
ESCA	TCGA-VR-A8EW-01	MRPL10	ENST00000290208.7,ENST00000414011.1,ENST00000421763.1,ENST00000351111.2	chr17	45900948:45901824:45904002:45904147:45904405:45904570,	45904003	45904147	45904115	45904115	Nonsense_Mutation	G	T	p.Y150X
ESCA	TCGA-VR-A8EW-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663830	103663830	Nonsense_Mutation	G	A	p.Q244X
ESCA	TCGA-L5-A8NI-01	NIPSNAP3B	ENST00000460936.1	chr9	107535102:107535189:107535277:107535457:107539408:107539738,	107535278	107535457	107535283	107535283	Nonsense_Mutation	G	T	p.E225X
ESCA	TCGA-L5-A8NI-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000188403.7	chr12	100904555:100904921:100926235:100926376:100928667:100928801,	100926236	100926376	100926373	100926373	Nonsense_Mutation	G	T	p.E205X
ESCA	TCGA-L5-A8NI-01	NR1H4	ENST00000551379.1,ENST00000392986.3	chr12	100904555:100904921:100926235:100926388:100928667:100928801,	100926236	100926388	100926373	100926373	Nonsense_Mutation	G	T	p.E205X
ESCA	TCGA-L5-A8NI-01	RUFY3	ENST00000417478.2,ENST00000536664.1,ENST00000381006.3,ENST00000502653.1,ENST00000226328.4	chr4	71648807:71648900:71650512:71650596:71654522:71654690,	71650513	71650596	71650543	71650543	Nonsense_Mutation	C	T	p.Q400X
ESCA	TCGA-LN-A8I1-01	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36251414:36251601:36253748:36253891:36255571:36255692,	36253749	36253891	36253802	36253802	Nonsense_Mutation	G	A	p.R397X
ESCA	TCGA-LN-A8I1-01	UBLCP1	ENST00000296786.6	chr5	158699030:158699129:158701592:158701630:158702155:158702254,	158701593	158701630	158701616	158701616	Nonsense_Mutation	G	T	p.E191X
ESCA	TCGA-LN-A8I1-01	ADAM19	ENST00000257527.4,ENST00000517374.1,ENST00000517905.1,ENST00000517951.1,ENST00000430702.2,ENST00000394020.1	chr5	156918622:156918731:156918842:156918920:156919980:156920185,	156918843	156918920	156918875	156918875	Nonsense_Mutation	C	A	p.E652X
ESCA	TCGA-LN-A8I1-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141763298:141763386:141764183:141764322:141765134:141765268,	141764184	141764322	141764189	141764189	Nonsense_Mutation	G	T	p.E1451X
ESCA	TCGA-L5-A4OH-01	BTN3A1	ENST00000082468.7,ENST00000425234.2,ENST00000289361.6,ENST00000476549.2	chr6	26406136:26406484:26407898:26408180:26409760:26409961,	26407899	26408180	26408018	26408018	Nonsense_Mutation	G	T	p.E185X
ESCA	TCGA-L5-A4OH-01	NUB1	ENST00000413040.2,ENST00000355851.4,ENST00000566856.1,ENST00000568733.1	chr7	151064946:151065054:151065820:151065973:151071182:151071287,	151065821	151065973	151065971	151065971	Nonsense_Mutation	G	T	p.E440X
ESCA	TCGA-L5-A4OH-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981121	201981121	Nonsense_Mutation	G	A	p.W67X
ESCA	TCGA-Q9-A6FW-01	DYNC1LI2	ENST00000440564.2	chr16	66770099:66770147:66776340:66776571:66783099:66783216,66770099:66770147:66776340:66776571:66785175:66785206,	66776341	66776571	66776398	66776398	Nonsense_Mutation	C	A	p.E158X
ESCA	TCGA-Q9-A6FW-01	DYNC1LI2	ENST00000566150.1	chr16	66770099:66770147:66776340:66776457:66783099:66783216,	66776341	66776457	66776398	66776398	Nonsense_Mutation	C	A	p.E158X
ESCA	TCGA-Q9-A6FW-01	MTO1	ENST00000524046.1	chr6	74190040:74190090:74190397:74190528:74192171:74192257,	74190398	74190528	74190469	74190469	Nonsense_Mutation	C	T	p.R426X
ESCA	TCGA-Q9-A6FW-01	FGGY	ENST00000430447.1	chr1	60132954:60133075:60139710:60139805:60146350:60146667,60132954:60133075:60139710:60139805:60223602:60223664,60132954:60133075:60139710:60139805:60163319:60163412,	60139711	60139805	60139734	60139734	Nonsense_Mutation	G	T	p.E505X
ESCA	TCGA-Q9-A6FW-01	STAU2	ENST00000521727.1,ENST00000521210.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000518767.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521451.1,ENST00000523558.1	chr8	74507400:74507532:74515960:74516098:74525978:74526191,	74515961	74516098	74515978	74515978	Nonsense_Mutation	G	A	p.R338X
ESCA	TCGA-LN-A4A8-01	DENND6A	ENST00000311128.5	chr3	57616651:57616705:57618991:57619081:57620284:57620349,	57618992	57619081	57619036	57619036	Nonsense_Mutation	G	A	p.R437X
ESCA	TCGA-LN-A4A8-01	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	49032841:49032977:49034582:49034732:49040052:49040197,	49034583	49034732	49034650	49034650	Nonsense_Mutation	G	T	p.E526X
ESCA	TCGA-LN-A4A8-01	RPAP2	ENST00000477322.1,ENST00000610020.1	chr1	92811402:92811471:92846280:92846430:92852567:92852790,	92846281	92846430	92846387	92846387	Nonsense_Mutation	G	T	p.E599X
ESCA	TCGA-R6-A6L4-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547693	165547693	Nonsense_Mutation	C	A	p.E377X
ESCA	TCGA-R6-A6XQ-01	HSF4	ENST00000521916.1	chr16	67202976:67203004:67203181:67203251:67203630:67203844,67202976:67203004:67203181:67203251:67203533:67203684,67202976:67203004:67203181:67203251:67203538:67203844,	67203182	67203251	67203215	67203215	Nonsense_Mutation	G	T	p.E430X
ESCA	TCGA-R6-A6XQ-01	SMPDL3A	ENST00000368440.4,ENST00000539041.1	chr6	123117974:123118113:123122454:123122551:123124808:123124978,	123122455	123122551	123122527	123122527	Nonsense_Mutation	G	T	p.E182X
ESCA	TCGA-L5-A43C-01	CPA5	ENST00000495736.1	chr7	130003281:130003350:130007212:130007831:130008250:130008438,	130007213	130007831	130007803	130007803	Nonsense_Mutation	C	A	p.Y365X
ESCA	TCGA-L5-A43C-01	CPA5	ENST00000485477.1,ENST00000393213.3,ENST00000461828.1,ENST00000474905.1,ENST00000466363.2,ENST00000355388.3	chr7	130007212:130007412:130007746:130007831:130008250:130008438,	130007747	130007831	130007803	130007803	Nonsense_Mutation	C	A	p.Y365X
ESCA	TCGA-L5-A43C-01	RPS26	ENST00000552361.1	chr12	56435923:56435953:56436208:56436386:56437146:56437277,	56436209	56436386	56436329	56436329	Nonsense_Mutation	C	T	p.R42X
ESCA	TCGA-L5-A43C-01	NR2C1	ENST00000545833.1	chr12	95425124:95425264:95434251:95434373:95442843:95443009,95425124:95425264:95434251:95434373:95445537:95445565,95422233:95422285:95434251:95434373:95442843:95443009,	95434252	95434373	95434294	95434294	Nonsense_Mutation	G	T	p.S404X
ESCA	TCGA-L5-A43C-01	BBS1	ENST00000526760.1,ENST00000393994.2,ENST00000526035.1,ENST00000534730.1,ENST00000529953.1,ENST00000527251.1,ENST00000318312.7,ENST00000533430.1,ENST00000529766.1	chr11	66281876:66282149:66283010:66283057:66283163:66283202,	66283011	66283057	66283014	66283014	Nonsense_Mutation	C	T	p.R146X
ESCA	TCGA-L5-A43C-01	ATP8A1	ENST00000381668.5,ENST00000514372.1,ENST00000506602.1,ENST00000264449.10	chr4	42425633:42425722:42445581:42445689:42446594:42446651,	42445582	42445689	42445670	42445670	Nonsense_Mutation	C	T	p.W1012X
ESCA	TCGA-L5-A43H-01	ANKMY2	ENST00000306999.2,ENST00000447802.1	chr7	16650173:16650388:16655368:16655529:16664607:16664706,	16655369	16655529	16655488	16655488	Nonsense_Mutation	G	A	p.R138X
ESCA	TCGA-L5-A43H-01	FMO1	ENST00000402921.2,ENST00000367750.3,ENST00000354841.4	chr1	171251396:171251472:171252282:171252355:171254340:171254660,	171252283	171252355	171252321	171252321	Nonsense_Mutation	G	T	p.E408X
ESCA	TCGA-L5-A43H-01	TFAP2A	ENST00000466073.1	chr6	10400680:10400822:10402724:10402843:10404740:10404827,10398920:10398938:10402724:10402843:10404740:10404827,	10402725	10402843	10402728	10402728	Nonsense_Mutation	C	A	p.E294X
ESCA	TCGA-L5-A43H-01	PRLR	ENST00000509140.1,ENST00000397391.3,ENST00000513753.1,ENST00000382002.5,ENST00000231423.3,ENST00000509934.1,ENST00000542609.1,ENST00000514088.1,ENST00000310101.5,ENST00000348262.3	chr5	35070225:35070367:35072676:35072846:35089652:35089722,35070225:35070367:35072676:35072846:35084571:35084741,	35072677	35072846	35072680	35072680	Nonsense_Mutation	C	T	p.W180X
ESCA	TCGA-LN-A8I0-01	PIK3R1	ENST00000320694.8	chr5	67586509:67586662:67588086:67588189:67588928:67589027,67584522:67584579:67588086:67588189:67588928:67589027,	67588087	67588189	67588172	67588172	Nonsense_Mutation	C	A	p.Y334X
ESCA	TCGA-LN-A8I0-01	ZFAND1	ENST00000517353.1,ENST00000521742.1,ENST00000519820.1,ENST00000518419.1,ENST00000220669.5,ENST00000519523.1,ENST00000523096.1,ENST00000519464.1	chr8	82627243:82627349:82629483:82629523:82630416:82630459,	82629484	82629523	82629519	82629519	Nonsense_Mutation	C	A	p.E35X
ESCA	TCGA-LN-A8I0-01	PIKFYVE	ENST00000264380.4	chr2	209204734:209204855:209207277:209207373:209209834:209209918,	209207278	209207373	209207315	209207315	Nonsense_Mutation	C	T	p.R1657X
ESCA	TCGA-L5-A4OT-01	ACCSL	ENST00000378832.1,ENST00000527145.1	chr11	44074540:44074618:44074955:44075056:44076751:44076841,	44074956	44075056	44074968	44074968	Nonsense_Mutation	C	T	p.R321X
ESCA	TCGA-L5-A4OT-01	SCAMP3	ENST00000490999.1,ENST00000302631.3,ENST00000355379.3,ENST00000465312.1,ENST00000472397.1	chr1	155227088:155227177:155227288:155227448:155228616:155228683,	155227289	155227448	155227351	155227351	Nonsense_Mutation	C	T	p.W205X
ESCA	TCGA-L5-A4OT-01	DNAH5	ENST00000265104.4	chr5	13727615:13727765:13729547:13729669:13735239:13735430,	13729548	13729669	13729594	13729594	Nonsense_Mutation	A	T	p.L3946X
ESCA	TCGA-LN-A49R-01	MXD1	ENST00000435990.1,ENST00000264444.2	chr2	70143255:70143352:70148867:70148897:70162482:70162597,	70148868	70148897	70148870	70148870	Nonsense_Mutation	C	G	p.S59X
ESCA	TCGA-LN-A49R-01	RMND5B	ENST00000507575.1	chr5	177558237:177558377:177565108:177565259:177569583:177569614,177562173:177562313:177565108:177565259:177569583:177569614,177558035:177558055:177565108:177565259:177569583:177569614,	177565109	177565259	177565148	177565148	Nonsense_Mutation	G	T	p.E10X
ESCA	TCGA-LN-A49R-01	RMND5B	ENST00000512663.1	chr5	177558237:177558377:177565108:177565397:177569583:177569614,	177565109	177565397	177565148	177565148	Nonsense_Mutation	G	T	p.E10X
ESCA	TCGA-LN-A49R-01	BCR	ENST00000359540.3,ENST00000305877.8,ENST00000487968.1	chr22	23627270:23627388:23629345:23629465:23630283:23630359,	23629346	23629465	23629403	23629403	Nonsense_Mutation	G	T	p.E822X
ESCA	TCGA-LN-A49R-01	UBE2L6	ENST00000528275.1,ENST00000527022.1,ENST00000287156.4,ENST00000340573.4,ENST00000526659.1	chr11	57319931:57319982:57321909:57322096:57327809:57327905,	57321910	57322096	57322082	57322082	Nonsense_Mutation	G	T	p.Y46X
ESCA	TCGA-IG-A5S3-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53666504:53666641:53668600:53668794:53670403:53670643,	53668601	53668794	53668781	53668781	Nonsense_Mutation	G	T	p.E563X
ESCA	TCGA-IG-A5S3-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000443427.1,ENST00000338799.5,ENST00000456483.2	chr6	152129239:152129499:152163731:152163922:152201789:152201903,	152163732	152163922	152163922	152163922	Nonsense_Mutation	G	T	p.G215X
ESCA	TCGA-LN-A49O-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20766666:20766763:20767937:20768078:20778605:20778762,	20767938	20768078	20768053	20768053	Nonsense_Mutation	C	T	p.R948X
ESCA	TCGA-LN-A4MR-01	DDAH2	ENST00000488119.1,ENST00000375792.3	chr6	31696422:31696522:31696641:31697002:31697827:31698004,	31696642	31697002	31696815	31696815	Nonsense_Mutation	G	A	p.Q42X
ESCA	TCGA-LN-A4MR-01	DDAH2	ENST00000375787.2	chr6	31696422:31696522:31696641:31696998:31697827:31698004,	31696642	31696998	31696815	31696815	Nonsense_Mutation	G	A	p.Q42X
ESCA	TCGA-LN-A4MR-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057845	145057845	Nonsense_Mutation	C	A	p.E638X
ESCA	TCGA-LN-A4MR-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057845	145057845	Nonsense_Mutation	C	A	p.E638X
ESCA	TCGA-LN-A4MR-01	SERINC3	ENST00000342374.4,ENST00000541235.1,ENST00000255175.1	chr20	43133441:43133532:43135467:43135637:43138531:43138669,	43135468	43135637	43135470	43135470	Nonsense_Mutation	G	A	p.Q261X
ESCA	TCGA-L5-A8NH-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114606915	114606915	Nonsense_Mutation	C	A	p.E443X
ESCA	TCGA-L5-A8NH-01	RSRC1	ENST00000480820.1,ENST00000480119.1,ENST00000295930.3,ENST00000312179.6,ENST00000464171.1	chr3	158254880:158254987:158261123:158261276:158261971:158262314,	158261124	158261276	158261202	158261202	Nonsense_Mutation	G	T	p.E280X
ESCA	TCGA-L5-A8NH-01	LRCH1	ENST00000463929.1,ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47261986:47262114:47263267:47263331:47266670:47266712,	47263268	47263331	47263314	47263314	Nonsense_Mutation	C	T	p.R333X
ESCA	TCGA-L5-A8NH-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814805	214814805	Nonsense_Mutation	A	T	p.K1042X
ESCA	TCGA-L5-A8NH-01	TNPO3	ENST00000482320.1,ENST00000471166.1,ENST00000393245.1,ENST00000265388.5,ENST00000471234.1	chr7	128641112:128641288:128645069:128645213:128655032:128655189,	128645070	128645213	128645134	128645134	Nonsense_Mutation	A	T	p.L211X
ESCA	TCGA-L5-A8NH-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470619	161470619	Nonsense_Mutation	G	T	p.E439X
ESCA	TCGA-VR-A8EO-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54363472:54363693:54385194:54385390:54398613:54398828,	54385195	54385390	54385258	54385258	Nonsense_Mutation	C	T	p.R548X
ESCA	TCGA-VR-A8EO-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904465	5904465	Nonsense_Mutation	G	T	p.E559X
ESCA	TCGA-VR-A8EO-01	FAM151B	ENST00000511718.1,ENST00000282226.4	chr5	79815511:79815729:79817821:79817957:79837491:79837861,	79817822	79817957	79817926	79817926	Nonsense_Mutation	C	T	p.Q214X
ESCA	TCGA-VR-A8EO-01	AP4B1	ENST00000369569.1,ENST00000489499.1,ENST00000369571.2,ENST00000256658.4	chr1	114442952:114443022:114445259:114445484:114447226:114447415,114444380:114444507:114445259:114445484:114447226:114447415,	114445260	114445484	114445385	114445385	Nonsense_Mutation	G	T	p.Y71X
ESCA	TCGA-L5-A8NU-01	BCAS3	ENST00000592393.1,ENST00000407086.3,ENST00000593004.1,ENST00000591371.1,ENST00000588462.1,ENST00000408905.3,ENST00000390652.5,ENST00000589222.1,ENST00000589916.1,ENST00000588168.1	chr17	58761342:58761397:58767046:58767122:58786579:58786627,	58767047	58767122	58767052	58767052	Nonsense_Mutation	C	A	p.Y48X
ESCA	TCGA-L5-A8NU-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25276072:25276209:25280450:25280601:25281160:25281329,	25280451	25280601	25280563	25280563	Nonsense_Mutation	C	T	p.Q717X
ESCA	TCGA-L5-A8NU-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000334746.5	chr14	93719992:93720136:93723540:93723701:93727947:93728023,	93723541	93723701	93723588	93723588	Nonsense_Mutation	G	A	p.R521X
ESCA	TCGA-L5-A4OJ-01	STARD3	ENST00000578254.1	chr17	37809870:37810003:37813162:37813338:37814027:37814051,	37813163	37813338	37813294	37813294	Nonsense_Mutation	G	T	p.E85X
ESCA	TCGA-L5-A4OJ-01	STARD3	ENST00000460894.2	chr17	37809752:37810003:37813150:37813338:37814027:37814051,	37813151	37813338	37813294	37813294	Nonsense_Mutation	G	T	p.E85X
ESCA	TCGA-L5-A4OJ-01	STARD3	ENST00000544210.2,ENST00000577248.1,ENST00000580551.1,ENST00000394250.4,ENST00000583718.1,ENST00000578232.1,ENST00000579479.1,ENST00000336308.5,ENST00000443521.1,ENST00000583582.1,ENST00000488876.1,ENST00000583419.1,ENST00000581894.1,ENST00000582874.1,ENST00000585214.1,ENST00000578577.1,ENST00000484773.2	chr17	37809870:37810003:37813260:37813338:37814027:37814051,	37813261	37813338	37813294	37813294	Nonsense_Mutation	G	T	p.E85X
ESCA	TCGA-L5-A4OJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101252	27101252	Nonsense_Mutation	C	T	p.Q1512X
ESCA	TCGA-L5-A4OJ-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176034	63176034	Nonsense_Mutation	G	T	p.E720X
ESCA	TCGA-L5-A4OJ-01	SLC30A5	ENST00000396591.3	chr5	68419169:68419252:68423830:68423959:68425273:68425953,	68423831	68423959	68423939	68423939	Nonsense_Mutation	G	T	p.E703X
ESCA	TCGA-L5-A4OJ-01	NPR1	ENST00000368680.3	chr1	153659491:153659563:153659675:153659832:153660109:153660265,	153659676	153659832	153659784	153659784	Nonsense_Mutation	G	T	p.E682X
ESCA	TCGA-L5-A4OJ-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107300162	107300162	Nonsense_Mutation	G	A	p.Q266X
ESCA	TCGA-L5-A4OJ-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789596	3789596	Nonsense_Mutation	G	T	p.C1421X
ESCA	TCGA-L5-A4OJ-01	PAK6	ENST00000260404.4,ENST00000560346.1,ENST00000441369.1,ENST00000542403.2,ENST00000453867.1	chr15	40565751:40565877:40566342:40566477:40568127:40569687,	40566343	40566477	40566472	40566472	Nonsense_Mutation	C	T	p.G625X
ESCA	TCGA-L5-A4OJ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198X
ESCA	TCGA-LN-A5U6-01	DGKI	ENST00000483619.1	chr7	137363352:137363398:137374639:137374748:137531207:137531282,137363352:137363398:137374639:137374748:137459340:137459395,	137374640	137374748	137374666	137374666	Nonsense_Mutation	C	A	p.E162X
ESCA	TCGA-L5-A88V-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12126085	12126085	Nonsense_Mutation	G	A	p.W2019X
ESCA	TCGA-L5-A88V-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278181	114278181	Nonsense_Mutation	G	T	p.E2803X
ESCA	TCGA-LN-A4A5-01	CAPN6	ENST00000324068.1	chrX	110494776:110494970:110495534:110495727:110496235:110496444,	110495535	110495727	110495711	110495711	Nonsense_Mutation	C	A	p.E175X
ESCA	TCGA-L7-A6VZ-01	COL5A1	ENST00000371817.3	chr9	137619111:137619243:137620515:137620653:137622081:137622321,	137620516	137620653	137620555	137620555	Nonsense_Mutation	G	T	p.E276X
ESCA	TCGA-L7-A6VZ-01	FTO	ENST00000471389.1	chr16	53844051:53844129:53859775:53860403:53878066:53878210,	53859776	53860403	53860211	53860211	Nonsense_Mutation	G	T	p.G187X
ESCA	TCGA-L7-A6VZ-01	SPDL1	ENST00000510751.1	chr5	169010791:169010893:169015397:169015579:169018051:169018078,	169015398	169015579	169015514	169015514	Nonsense_Mutation	G	T	p.E32X
ESCA	TCGA-L7-A6VZ-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833726	82833726	Nonsense_Mutation	C	A	p.S1635X
ESCA	TCGA-L7-A6VZ-01	POLR3GL	ENST00000369314.1	chr1	145457547:145457604:145459651:145459781:145460096:145460263,145457934:145458003:145459651:145459781:145460096:145460263,	145459652	145459781	145459750	145459750	Nonsense_Mutation	G	T	p.S53X
ESCA	TCGA-LN-A9FQ-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171510968:171511368:171514617:171514826:171519224:171519379,	171514618	171514826	171514802	171514802	Nonsense_Mutation	C	T	p.Q1648X
ESCA	TCGA-LN-A9FQ-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323811	59323811	Nonsense_Mutation	G	T	p.E264X
ESCA	TCGA-LN-A9FQ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
ESCA	TCGA-VR-AA4G-01	PTK2	ENST00000519899.1,ENST00000519654.1,ENST00000523746.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000520151.1,ENST00000340930.3,ENST00000521172.1,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000521986.1,ENST00000535192.1	chr8	141762330:141762415:141771263:141771361:141774332:141774359,	141771264	141771361	141771320	141771320	Nonsense_Mutation	G	A	p.R448X
ESCA	TCGA-VR-AA4G-01	IL33	ENST00000381434.3,ENST00000456383.2	chr9	6241692:6241785:6250473:6250599:6251139:6251265,	6250474	6250599	6250494	6250494	Nonsense_Mutation	G	T	p.E38X
ESCA	TCGA-VR-AA4G-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044483	108044483	Nonsense_Mutation	G	A	p.Q410X
ESCA	TCGA-VR-AA4G-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579406	Nonsense_Mutation	G	T	p.S94X
ESCA	TCGA-VR-A8ET-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966761	64966761	Nonsense_Mutation	C	T	p.R570X
ESCA	TCGA-VR-A8ET-01	DTNB	ENST00000405222.1,ENST00000493538.1,ENST00000407038.3,ENST00000349996.6,ENST00000545439.1,ENST00000485845.1,ENST00000398951.2,ENST00000288642.8,ENST00000303659.4,ENST00000406818.3,ENST00000407661.3,ENST00000407186.1,ENST00000404103.3	chr2	25851051:25851253:25861882:25861963:25875462:25875529,	25861883	25861963	25861925	25861925	Nonsense_Mutation	T	A	p.R36X
ESCA	TCGA-VR-A8ET-01	FBXO16	ENST00000380254.2,ENST00000518734.1,ENST00000346498.2,ENST00000521548.1	chr8	28304687:28304790:28309760:28309993:28314282:28314323,	28309761	28309993	28309933	28309933	Nonsense_Mutation	C	A	p.E190X
ESCA	TCGA-V5-A7RE-01	MMP19	ENST00000548629.1,ENST00000322569.4,ENST00000552872.1	chr12	56232389:56232518:56233279:56233525:56236136:56236222,56232389:56232518:56233279:56233525:56234450:56234597,	56233280	56233525	56233466	56233466	Nonsense_Mutation	C	A	p.E194X
ESCA	TCGA-V5-A7RE-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50054354:50054471:50055082:50055252:50056872:50057098,	50055083	50055252	50055135	50055135	Nonsense_Mutation	C	T	p.R359X
ESCA	TCGA-V5-A7RE-01	ARHGEF12	ENST00000529970.1,ENST00000525222.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120327826:120327959:120328429:120328465:120328788:120328943,	120328430	120328465	120328461	120328461	Nonsense_Mutation	C	T	p.R741X
ESCA	TCGA-V5-A7RE-01	ATP13A5	ENST00000342358.4	chr3	193036779:193036897:193039469:193039626:193040279:193040363,	193039470	193039626	193039503	193039503	Nonsense_Mutation	C	A	p.E628X
ESCA	TCGA-V5-A7RE-01	TMEM44	ENST00000381975.3	chr3	194309257:194309368:194325015:194325170:194331644:194331707,	194325016	194325170	194325019	194325019	Nonsense_Mutation	C	T	p.W390X
ESCA	TCGA-V5-A7RE-01	TMEM44	ENST00000392432.2,ENST00000347147.4,ENST00000477651.1,ENST00000452358.1	chr3	194309257:194309368:194325015:194325174:194331644:194331707,	194325016	194325174	194325019	194325019	Nonsense_Mutation	C	T	p.W390X
ESCA	TCGA-IG-A7DP-01	IL11RA	ENST00000556792.1,ENST00000478802.2,ENST00000441545.2,ENST00000602473.1,ENST00000378817.4,ENST00000318041.9,ENST00000555981.1,ENST00000555003.1,ENST00000556531.1	chr9	34655214:34655314:34655601:34655662:34657031:34657146,34655214:34655314:34655601:34655662:34656735:34656905,	34655602	34655662	34655616	34655616	Nonsense_Mutation	C	T	p.Q39X
ESCA	TCGA-R6-A8W5-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000605788.1,ENST00000461421.1,ENST00000476468.1,ENST00000488254.2,ENST00000464969.2	chr10	103918949:103919065:103919189:103919325:103919652:103919695,	103919190	103919325	103919295	103919295	Nonsense_Mutation	G	T	p.E277X
ESCA	TCGA-R6-A8W5-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000465552.1,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41275644:41275788:41277214:41277334:41277839:41277990,	41277215	41277334	41277242	41277242	Nonsense_Mutation	G	T	p.E571X
ESCA	TCGA-IG-A3YC-01	RPS11	ENST00000602252.1,ENST00000601216.1	chr19	49999710:49999728:50000450:50000852:50001173:50001303,	50000451	50000852	50000783	50000783	Nonsense_Mutation	G	T	p.E52X
ESCA	TCGA-IG-A3YC-01	RPS11	ENST00000594493.1,ENST00000601306.1,ENST00000596873.1,ENST00000270625.2	chr19	50000450:50000582:50000776:50000852:50001173:50001303,	50000777	50000852	50000783	50000783	Nonsense_Mutation	G	T	p.E52X
ESCA	TCGA-VR-A8Q7-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109609609:109609719:109610079:109610161:109611936:109612035,	109610080	109610161	109610096	109610096	Nonsense_Mutation	G	A	p.W351X
ESCA	TCGA-VR-A8Q7-01	ITGA1	ENST00000504669.1,ENST00000282588.6	chr5	52214561:52214728:52216161:52216298:52218606:52218717,	52216162	52216298	52216167	52216167	Nonsense_Mutation	C	T	p.Q721X
ESCA	TCGA-VR-A8Q7-01	NCK2	ENST00000233154.4,ENST00000393349.2	chr2	106471506:106471745:106497783:106498505:106509437:106509632,	106497784	106498505	106498188	106498188	Nonsense_Mutation	G	T	p.E211X
ESCA	TCGA-VR-A8Q7-01	CNN3	ENST00000370206.4,ENST00000545882.1,ENST00000538964.1,ENST00000415017.1,ENST00000487539.1	chr1	95367224:95367341:95367676:95367814:95368677:95368744,	95367677	95367814	95367781	95367781	Nonsense_Mutation	G	A	p.Q94X
ESCA	TCGA-R6-A6Y2-01	VCP	ENST00000493886.1,ENST00000358901.6	chr9	35057372:35057527:35059060:35059216:35059489:35059589,	35059061	35059216	35059171	35059171	Nonsense_Mutation	C	A	p.G684X
ESCA	TCGA-R6-A6Y2-01	ADCK1	ENST00000393639.4	chr14	78288777:78288861:78325418:78325622:78353433:78353553,78288777:78288861:78325418:78325622:78365442:78365601,	78325419	78325622	78325584	78325584	Nonsense_Mutation	G	T	p.E129X
ESCA	TCGA-R6-A6Y2-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102391	168102391	Nonsense_Mutation	C	T	p.R1497X
ESCA	TCGA-R6-A6Y2-01	CLK4	ENST00000521621.1,ENST00000519583.1,ENST00000520878.1,ENST00000316308.4	chr5	178030844:178030935:178032303:178032383:178035376:178035459,	178032304	178032383	178032350	178032350	Nonsense_Mutation	C	A	p.E390X
ESCA	TCGA-R6-A6Y2-01	TLE3	ENST00000558201.1,ENST00000558379.1,ENST00000442299.2,ENST00000558939.1,ENST00000557919.1,ENST00000560525.1,ENST00000560589.1,ENST00000539550.1,ENST00000559191.1,ENST00000559048.1,ENST00000559929.1,ENST00000560939.1,ENST00000557907.1,ENST00000451782.2,ENST00000561453.1,ENST00000557997.1,ENST00000440567.3,ENST00000317509.8	chr15	70342435:70342543:70343729:70343806:70344712:70344863,	70343730	70343806	70343732	70343732	Nonsense_Mutation	G	A	p.Q737X
ESCA	TCGA-R6-A6Y2-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2	chr2	100209656:100210751:100217896:100218083:100266087:100266128,	100217897	100218083	100217961	100217961	Nonsense_Mutation	G	T	p.S461X
ESCA	TCGA-R6-A6Y2-01	HMMR	ENST00000393915.4,ENST00000353866.3,ENST00000358715.3,ENST00000432118.2	chr5	162898190:162898277:162898368:162898469:162900184:162900259,	162898369	162898469	162898429	162898429	Nonsense_Mutation	G	T	p.E204X
ESCA	TCGA-R6-A6Y2-01	MST1R	ENST00000296474.3,ENST00000344206.4	chr3	49929203:49929271:49932599:49932806:49932879:49932981,	49932600	49932806	49932735	49932735	Nonsense_Mutation	C	A	p.E1046X
ESCA	TCGA-R6-A6Y2-01	PLSCR3	ENST00000574401.1,ENST00000324822.11,ENST00000535512.1,ENST00000576362.1,ENST00000573213.1,ENST00000573070.1,ENST00000576201.1	chr17	7296785:7296828:7296919:7297155:7297422:7297586,	7296920	7297155	7296934	7296934	Nonsense_Mutation	C	A	p.E77X
ESCA	TCGA-R6-A6Y2-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117169	72117169	Nonsense_Mutation	G	T	p.G646X
ESCA	TCGA-R6-A6Y2-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117169	72117169	Nonsense_Mutation	G	T	p.G646X
ESCA	TCGA-JY-A938-01	RASSF7	ENST00000454668.2,ENST00000397583.3,ENST00000344375.4,ENST00000397582.3,ENST00000431809.1	chr11	561761:561892:562078:562776:563188:563317,	562079	562776	562174	562174	Nonsense_Mutation	G	T	p.G74X
ESCA	TCGA-JY-A938-01	RASSF7	ENST00000414138.2	chr11	561761:561892:562083:562776:563188:563317,	562084	562776	562174	562174	Nonsense_Mutation	G	T	p.G74X
ESCA	TCGA-JY-A938-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8959521:8959706:8961951:8962031:8962353:8962395,	8961952	8962031	8961961	8961961	Nonsense_Mutation	G	T	p.C14472X
ESCA	TCGA-JY-A6FA-01	STRIP1	ENST00000369796.1,ENST00000369795.3,ENST00000485775.1,ENST00000473429.1	chr1	110587636:110587700:110589301:110589373:110590163:110590238,	110589302	110589373	110589335	110589335	Nonsense_Mutation	C	T	p.Q484X
ESCA	TCGA-JY-A6FA-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000581230.1,ENST00000578804.1,ENST00000579461.1,ENST00000540698.2,ENST00000579996.1,ENST00000450599.2	chr17	62498556:62498667:62499043:62499216:62499305:62499364,	62499044	62499216	62499111	62499111	Nonsense_Mutation	C	A	p.E306X
ESCA	TCGA-JY-A6FA-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198X
ESCA	TCGA-JY-A6FA-01	AIP	ENST00000279146.3	chr11	67254476:67254656:67256737:67256926:67257508:67257685,	67256738	67256926	67256885	67256885	Nonsense_Mutation	C	T	p.Q143X
ESCA	TCGA-JY-A6FA-01	MON1B	ENST00000248248.3,ENST00000567291.1,ENST00000569610.1	chr16	77225372:77225530:77227347:77227674:77228231:77228257,	77227348	77227674	77227398	77227398	Nonsense_Mutation	G	T	p.E67X
ESCA	TCGA-JY-A6FA-01	MON1B	ENST00000564006.1	chr16	77225372:77225530:77227333:77227674:77228231:77228257,	77227334	77227674	77227398	77227398	Nonsense_Mutation	G	T	p.E67X
ESCA	TCGA-JY-A6FA-01	PDZK1IP1	ENST00000294338.2,ENST00000371885.1	chr1	47650673:47650769:47652990:47653099:47655537:47655603,	47652991	47653099	47653002	47653002	Nonsense_Mutation	G	T	p.C55X
ESCA	TCGA-JY-A6FA-01	FBXO11	ENST00000434234.1	chr2	48016460:48016579:48035132:48035386:48035467:48035566,	48035133	48035386	48035283	48035283	Nonsense_Mutation	C	A	p.E920X
ESCA	TCGA-LN-A4A6-01	ALG5	ENST00000496689.1,ENST00000413537.2,ENST00000239891.3	chr13	37559785:37559877:37563620:37563713:37567740:37567809,	37563621	37563713	37563687	37563687	Nonsense_Mutation	A	T	p.Y127X
ESCA	TCGA-LN-A4A6-01	NRP2	ENST00000412873.2,ENST00000540841.1,ENST00000540178.1,ENST00000272849.3,ENST00000357118.4,ENST00000357785.5,ENST00000360409.3	chr2	206617558:206617699:206628397:206628660:206630197:206630294,	206628398	206628660	206628610	206628610	Nonsense_Mutation	G	T	p.E753X
ESCA	TCGA-LN-A4A6-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7639094:7639409:7639489:7639582:7639954:7640269,	7639490	7639582	7639546	7639546	Nonsense_Mutation	G	T	p.S696X
ESCA	TCGA-VR-A8EU-01	ARMC10	ENST00000323735.6,ENST00000434153.1,ENST00000323716.3	chr7	102715614:102715858:102716223:102716328:102724128:102724277,	102716224	102716328	102716313	102716313	Nonsense_Mutation	A	T	p.K77X
ESCA	TCGA-VR-A8EU-01	WDR1	ENST00000499869.2,ENST00000382452.2,ENST00000508079.1	chr4	10090287:10090365:10099334:10099515:10100615:10100763,	10099335	10099515	10099383	10099383	Nonsense_Mutation	G	T	p.C170X
ESCA	TCGA-LN-A7HY-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000539256.1,ENST00000429027.2,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19489448:19489550:19496256:19496368:19498775:19498822,	19496257	19496368	19496362	19496362	Nonsense_Mutation	G	T	p.E886X
ESCA	TCGA-LN-A7HY-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578179	7578179	Nonsense_Mutation	C	A	p.E224X
ESCA	TCGA-VR-A8EQ-01	MANBA	ENST00000226578.4,ENST00000505239.1,ENST00000514430.1	chr4	103571693:103571858:103578838:103579057:103585841:103586009,	103578839	103579057	103578863	103578863	Nonsense_Mutation	C	T	p.W560X
ESCA	TCGA-VR-A8EQ-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000382111.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32275510:32275738:32289567:32289737:32293467:32293639,	32289568	32289737	32289687	32289687	Nonsense_Mutation	G	T	p.E1385X
ESCA	TCGA-VR-A8EQ-01	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12945995:12946213:12947760:12947979:12948826:12948941,	12947761	12947979	12947789	12947789	Nonsense_Mutation	G	T	p.S1349X
ESCA	TCGA-VR-A8EQ-01	PFKFB3	ENST00000540253.1,ENST00000379782.3,ENST00000379789.4,ENST00000360521.2,ENST00000477914.1,ENST00000461744.1,ENST00000490474.1,ENST00000467491.1,ENST00000379785.1,ENST00000379775.4,ENST00000317350.4,ENST00000536985.1	chr10	6257183:6257280:6258087:6258154:6258668:6258743,	6258088	6258154	6258137	6258137	Nonsense_Mutation	G	T	p.E117X
ESCA	TCGA-VR-A8EQ-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2133695:2133817:2134228:2134716:2134951:2135027,	2134229	2134716	2134649	2134649	Nonsense_Mutation	G	T	p.E1476X
ESCA	TCGA-LN-A4A2-01	COG5	ENST00000393603.2,ENST00000297135.3	chr7	106888840:106888944:106897176:106897239:106898717:106898828,	106897177	106897239	106897227	106897227	Nonsense_Mutation	G	A	p.Q598X
ESCA	TCGA-LN-A4A2-01	PLXNB2	ENST00000496720.1	chr22	50722261:50722419:50722560:50722673:50723001:50723034,	50722561	50722673	50722589	50722589	Nonsense_Mutation	G	T	p.Y745X
ESCA	TCGA-LN-A4A2-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50722261:50722419:50722560:50722642:50723001:50723034,	50722561	50722642	50722589	50722589	Nonsense_Mutation	G	T	p.Y745X
ESCA	TCGA-LN-A4A2-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236749119:236749241:236749540:236749752:236750701:236750790,	236749541	236749752	236749544	236749544	Nonsense_Mutation	C	A	p.E642X
ESCA	TCGA-2H-A9GI-01	ZDHHC2	ENST00000262096.8	chr8	17067901:17067989:17072745:17072858:17074680:17074755,	17072746	17072858	17072851	17072851	Nonsense_Mutation	C	A	p.C352X
ESCA	TCGA-2H-A9GI-01	CA2	ENST00000520127.1	chr8	86377500:86377698:86386552:86386645:86388026:86388089,	86386553	86386645	86386604	86386604	Nonsense_Mutation	C	T	p.Q135X
ESCA	TCGA-2H-A9GI-01	CES1	ENST00000563005.1	chr16	55857461:55857595:55860062:55860207:55866915:55867016,	55860063	55860207	55860155	55860155	Nonsense_Mutation	G	A	p.R105X
ESCA	TCGA-2H-A9GI-01	POMZP3	ENST00000441393.1	chr7	76239344:76239532:76240770:76240944:76241038:76241130,	76240771	76240944	76240862	76240862	Nonsense_Mutation	T	A	p.K162X
ESCA	TCGA-2H-A9GI-01	POMZP3	ENST00000310842.4,ENST00000424818.1	chr7	76239344:76239532:76240770:76240908:76241038:76241130,	76240771	76240908	76240862	76240862	Nonsense_Mutation	T	A	p.K162X
ESCA	TCGA-2H-A9GI-01	ZP3	ENST00000394860.3	chr7	76069566:76069658:76069755:76069928:76071158:76071379,	76069756	76069928	76069838	76069838	Nonsense_Mutation	A	T	p.K324X
ESCA	TCGA-2H-A9GI-01	ZP3	ENST00000336517.4,ENST00000416245.1,ENST00000467555.1,ENST00000394857.3,ENST00000466960.1	chr7	76069566:76069658:76069791:76069928:76071158:76071379,	76069792	76069928	76069838	76069838	Nonsense_Mutation	A	T	p.K324X
ESCA	TCGA-IG-A50L-01	RABGAP1L	ENST00000357444.6,ENST00000251507.4,ENST00000457696.1,ENST00000367689.3,ENST00000367690.1	chr1	174274123:174274265:174340116:174340210:174363132:174363283,	174340117	174340210	174340190	174340190	Nonsense_Mutation	G	A	p.W513X
ESCA	TCGA-IG-A50L-01	IGF2R	ENST00000356956.1	chr6	160479937:160480130:160481578:160481749:160482534:160482678,	160481579	160481749	160481680	160481680	Nonsense_Mutation	C	T	p.R1065X
ESCA	TCGA-IG-A50L-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000445090.1,ENST00000390005.5,ENST00000273009.6,ENST00000424049.1	chr2	233103242:233103355:233113948:233114056:233127916:233128072,	233113949	233114056	233113982	233113982	Nonsense_Mutation	G	T	p.E451X
ESCA	TCGA-JY-A93F-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20108050	20108050	Nonsense_Mutation	G	T	p.E230X
ESCA	TCGA-JY-A93F-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603524	138603524	Nonsense_Mutation	A	T	p.L283X
ESCA	TCGA-JY-A93F-01	BCL7A	ENST00000432926.2,ENST00000261822.4	chr12	122459883:122460089:122468605:122468687:122473236:122473333,	122468606	122468687	122468610	122468610	Nonsense_Mutation	A	T	p.K33X
ESCA	TCGA-JY-A93F-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087535	109087535	Nonsense_Mutation	G	T	p.E584X
ESCA	TCGA-L5-A4OO-01	FAM193A	ENST00000513350.1,ENST00000512465.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000513898.1,ENST00000324666.5	chr4	2664835:2665015:2673847:2674099:2691232:2691277,	2673848	2674099	2674072	2674072	Nonsense_Mutation	T	G	p.Y499X
ESCA	TCGA-V5-AASV-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248371	44248371	Nonsense_Mutation	A	T	p.L380X
ESCA	TCGA-V5-AASV-01	PLVAP	ENST00000252590.4	chr19	17471580:17471641:17476094:17476807:17476907:17476960,	17476095	17476807	17476376	17476376	Nonsense_Mutation	C	A	p.E300X
ESCA	TCGA-V5-AASV-01	FAM129B	ENST00000373312.3,ENST00000373314.3	chr9	130270700:130270817:130271254:130271410:130272424:130272612,	130271255	130271410	130271314	130271314	Nonsense_Mutation	G	A	p.R420X
ESCA	TCGA-V5-AASV-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13357530	13357530	Nonsense_Mutation	C	T	p.W17X
ESCA	TCGA-L5-A891-01	CEP70	ENST00000489254.1	chr3	138251355:138251412:138256019:138256189:138289159:138289340,138251355:138251412:138256019:138256189:138310695:138310798,	138256020	138256189	138256147	138256147	Nonsense_Mutation	C	A	p.E170X
ESCA	TCGA-L5-A891-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342X
ESCA	TCGA-L5-A891-01	PADI1	ENST00000537499.1,ENST00000413717.2	chr1	17559313:17559465:17563808:17563953:17565110:17565204,17559849:17559933:17563808:17563953:17565110:17565204,	17563809	17563953	17563896	17563896	Nonsense_Mutation	G	A	p.W467X
ESCA	TCGA-VR-AA7B-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724477	112724477	Nonsense_Mutation	G	T	p.E121X
ESCA	TCGA-VR-AA7B-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39833819:39833986:39835701:39835858:39838150:39838268,	39835702	39835858	39835766	39835766	Nonsense_Mutation	C	T	p.Q2273X
ESCA	TCGA-VR-AA7B-01	TCN2	ENST00000215838.3,ENST00000407817.3,ENST00000405742.3,ENST00000450638.1	chr22	31013316:31013482:31018954:31019070:31022446:31022992,	31018955	31019070	31019043	31019043	Nonsense_Mutation	C	T	p.R399X
ESCA	TCGA-VR-AA7B-01	DDX19A	ENST00000443119.2,ENST00000569771.1,ENST00000566574.1,ENST00000569319.1,ENST00000575878.1,ENST00000417604.2,ENST00000302243.7	chr16	70400526:70400764:70404125:70404288:70405274:70405466,	70404126	70404288	70404231	70404231	Nonsense_Mutation	G	T	p.E376X
ESCA	TCGA-VR-AA7B-01	ATP1A1	ENST00000488733.1,ENST00000295598.5	chr1	116915890:116916145:116926635:116926746:116927404:116927464,	116926636	116926746	116926723	116926723	Nonsense_Mutation	G	T	p.E34X
ESCA	TCGA-R6-A8WG-01	NUDT16	ENST00000359850.3,ENST00000521288.1	chr3	131100628:131100786:131100889:131101159:131102005:131102116,	131100890	131101159	131101022	131101022	Nonsense_Mutation	G	T	p.E91X
ESCA	TCGA-R6-A8WG-01	UBR1	ENST00000569971.1,ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43335541:43335593:43339358:43339487:43340589:43340689,	43339359	43339487	43339472	43339472	Nonsense_Mutation	G	A	p.R519X
ESCA	TCGA-R6-A6DQ-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576873	7576873	Nonsense_Mutation	C	A	p.G325X
ESCA	TCGA-R6-A6DQ-01	HNRNPK	ENST00000360384.5,ENST00000376264.2,ENST00000376281.4,ENST00000351839.3,ENST00000457156.1,ENST00000376263.3	chr9	86586796:86587104:86587758:86587887:86588200:86588314,	86587759	86587887	86587852	86587852	Nonsense_Mutation	G	T	p.C184X
ESCA	TCGA-2H-A9GF-01	PGR	ENST00000534780.1,ENST00000526300.1,ENST00000263463.5	chr11	100962490:100962607:100996737:100996889:100998164:100999801,	100996738	100996889	100996845	100996845	Nonsense_Mutation	G	T	p.S561*
ESCA	TCGA-2H-A9GH-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
ESCA	TCGA-2H-A9GH-01	SESTD1	ENST00000446758.1,ENST00000428443.3	chr2	179986520:179986656:179988441:179988556:179989090:179989194,	179988442	179988556	179988496	179988496	Nonsense_Mutation	C	A	p.G410*
ESCA	TCGA-2H-A9GI-01	ZP3	ENST00000394860.3	chr7	76069566:76069658:76069755:76069928:76071158:76071379,	76069756	76069928	76069838	76069838	Nonsense_Mutation	A	T	p.K148*
ESCA	TCGA-2H-A9GI-01	ZP3	ENST00000336517.4,ENST00000416245.1,ENST00000467555.1,ENST00000394857.3,ENST00000466960.1	chr7	76069566:76069658:76069791:76069928:76071158:76071379,	76069792	76069928	76069838	76069838	Nonsense_Mutation	A	T	p.K148*
ESCA	TCGA-2H-A9GI-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28*
ESCA	TCGA-2H-A9GI-01	POMZP3	ENST00000441393.1	chr7	76239344:76239532:76240770:76240944:76241038:76241130,	76240771	76240944	76240862	76240862	Nonsense_Mutation	T	A	p.K162*
ESCA	TCGA-2H-A9GI-01	POMZP3	ENST00000310842.4,ENST00000424818.1	chr7	76239344:76239532:76240770:76240908:76241038:76241130,	76240771	76240908	76240862	76240862	Nonsense_Mutation	T	A	p.K162*
ESCA	TCGA-2H-A9GI-01	CES1	ENST00000563005.1	chr16	55857461:55857595:55860062:55860207:55866915:55867016,	55860063	55860207	55860155	55860155	Nonsense_Mutation	G	A	p.R104*
ESCA	TCGA-2H-A9GJ-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38418776:38418893:38420741:38421398:38430041:38430251,	38420742	38421398	38421089	38421089	Nonsense_Mutation	C	T	p.R221*
ESCA	TCGA-2H-A9GK-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
ESCA	TCGA-2H-A9GL-01	CADM1	ENST00000536727.1,ENST00000331581.6	chr11	115049363:115049495:115061607:115061661:115069125:115069158,	115061608	115061661	115061610	115061610	Nonsense_Mutation	G	C	p.S360*
ESCA	TCGA-2H-A9GL-01	BAK1	ENST00000374467.3,ENST00000360661.5	chr6	33541603:33541684:33541810:33541991:33543074:33543218,	33541811	33541991	33541885	33541885	Nonsense_Mutation	G	A	p.Q153*
ESCA	TCGA-2H-A9GL-01	DET1	ENST00000268148.8,ENST00000444300.1,ENST00000557842.1,ENST00000564406.1	chr15	89060012:89060204:89070829:89071017:89073853:89074704,	89070830	89071017	89070882	89070882	Nonsense_Mutation	G	A	p.Q418*
ESCA	TCGA-2H-A9GM-01	ZNF790	ENST00000528994.1,ENST00000525288.1,ENST00000356725.4,ENST00000586323.1	chr19	37310838:37311016:37314186:37314282:37314568:37314692,	37314187	37314282	37314262	37314262	Nonsense_Mutation	C	A	p.E52*
ESCA	TCGA-2H-A9GM-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7230280	7230280	Nonsense_Mutation	C	T	p.Q650*
ESCA	TCGA-2H-A9GQ-01	IPP	ENST00000359942.4	chr1	46159995:46160187:46165741:46165862:46179917:46179924,	46165742	46165862	46165855	46165855	Nonsense_Mutation	C	T	p.W513*
ESCA	TCGA-2H-A9GR-01	MTSS1	ENST00000431961.2,ENST00000354184.4	chr8	125568053:125568145:125568472:125568595:125575022:125575230,	125568473	125568595	125568580	125568580	Nonsense_Mutation	G	A	p.R433*
ESCA	TCGA-2H-A9GR-01	MTSS1	ENST00000524090.1,ENST00000325064.5,ENST00000520094.1,ENST00000523587.1,ENST00000519168.1,ENST00000518547.1,ENST00000395508.2	chr8	125568053:125568145:125568472:125568646:125575022:125575230,125568053:125568145:125568472:125568646:125569921:125570116,	125568473	125568646	125568580	125568580	Nonsense_Mutation	G	A	p.R433*
ESCA	TCGA-2H-A9GR-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145609279:145609473:145610219:145610480:145613012:145613306,	145610220	145610480	145610441	145610441	Nonsense_Mutation	C	T	p.R271*
ESCA	TCGA-2H-A9GR-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042140	134042140	Nonsense_Mutation	C	T	p.R2371*
ESCA	TCGA-2H-A9GR-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829130	61829130	Nonsense_Mutation	C	A	p.G3837*
ESCA	TCGA-IC-A6RE-01	HERC1	ENST00000443617.2,ENST00000561400.1	chr15	64004973:64005094:64005551:64005864:64008500:64008672,	64005552	64005864	64005604	64005604	Nonsense_Mutation	G	A	p.Q1471*
ESCA	TCGA-IC-A6RE-01	SLC44A3	ENST00000422520.2	chr1	95285956:95286034:95286504:95286612:95290048:95290191,95286205:95286279:95286504:95286612:95290048:95290191,	95286505	95286612	95286603	95286603	Nonsense_Mutation	G	A	p.W42*
ESCA	TCGA-IC-A6RE-01	FAM131A	ENST00000450976.1	chr3	184055098:184055159:184056174:184056317:184059511:184059605,	184056175	184056317	184056194	184056194	Nonsense_Mutation	G	A	p.W36*
ESCA	TCGA-IC-A6RE-01	NOP16	ENST00000389158.5,ENST00000503849.1,ENST00000510123.1,ENST00000509257.1	chr5	175812221:175812328:175813840:175813910:175815235:175815344,	175813841	175813910	175813851	175813851	Nonsense_Mutation	A	T	p.Y92*
ESCA	TCGA-IC-A6RE-01	NOP16	ENST00000504821.1	chr5	175812221:175812328:175813840:175813927:175815235:175815344,	175813841	175813927	175813851	175813851	Nonsense_Mutation	A	T	p.Y92*
ESCA	TCGA-IC-A6RE-01	NOP16	ENST00000502663.1	chr5	175812221:175812328:175813840:175813944:175815235:175815344,	175813841	175813944	175813851	175813851	Nonsense_Mutation	A	T	p.Y92*
ESCA	TCGA-IC-A6RE-01	FANCM	ENST00000267430.5,ENST00000556036.1,ENST00000542564.2	chr14	45624575:45624662:45628298:45628483:45633561:45633768,	45628299	45628483	45628400	45628400	Nonsense_Mutation	C	T	p.Q500*
ESCA	TCGA-IC-A6RF-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709523	176709523	Nonsense_Mutation	C	T	p.R1984*
ESCA	TCGA-IG-A3I8-01	DIAPH2	ENST00000373061.3,ENST00000324765.8,ENST00000355827.4,ENST00000373049.4	chrX	95993584:95993761:96013152:96013257:96136577:96136717,	96013153	96013257	96013192	96013192	Nonsense_Mutation	C	T	p.R128*
ESCA	TCGA-IG-A3I8-01	MRPS15	ENST00000373116.5	chr1	36921787:36921979:36923523:36923582:36926292:36926374,	36923524	36923582	36923529	36923529	Nonsense_Mutation	G	A	p.R147*
ESCA	TCGA-IG-A3QL-01	SPAG9	ENST00000514613.1,ENST00000505173.1,ENST00000576492.1,ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1	chr17	49084629:49084687:49091592:49091714:49097519:49097619,	49091593	49091714	49091695	49091695	Nonsense_Mutation	C	A	p.E371*
ESCA	TCGA-IG-A3Y9-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717813	5717813	Nonsense_Mutation	G	A	p.W117*
ESCA	TCGA-IG-A3Y9-01	TBC1D19	ENST00000264866.4,ENST00000502873.1,ENST00000511789.1	chr4	26741485:26741595:26744129:26744221:26750032:26750148,	26744130	26744221	26744169	26744169	Nonsense_Mutation	C	T	p.Q423*
ESCA	TCGA-IG-A3Y9-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512668	195512668	Nonsense_Mutation	G	C	p.S1928*
ESCA	TCGA-IG-A3Y9-01	REG1A	ENST00000233735.1	chr2	79349164:79349251:79349966:79350078:79350273:79350545,	79349967	79350078	79349978	79349978	Nonsense_Mutation	G	A	p.W111*
ESCA	TCGA-IG-A3Y9-01	TIAM1	ENST00000541036.1,ENST00000286827.3	chr21	32624057:32624505:32638325:32639299:32649047:32649083,	32638326	32639299	32638328	32638328	Nonsense_Mutation	G	A	p.Q321*
ESCA	TCGA-IG-A3YA-01	FRMPD2	ENST00000374201.3,ENST00000305531.3,ENST00000407470.4	chr10	49431165:49431313:49440157:49440332:49444524:49444596,	49440158	49440332	49440312	49440312	Nonsense_Mutation	A	C	p.Y338*
ESCA	TCGA-IG-A4P3-01	PDCD6IP	ENST00000457054.2	chr3	33867971:33868072:33870329:33870461:33877535:33877664,	33870330	33870461	33870405	33870405	Nonsense_Mutation	C	T	p.Q260*
ESCA	TCGA-IG-A4P3-01	PDCD6IP	ENST00000307296.3	chr3	33867971:33868072:33870344:33870461:33877535:33877664,	33870345	33870461	33870405	33870405	Nonsense_Mutation	C	T	p.Q260*
ESCA	TCGA-IG-A4P3-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48511126:48511196:48520632:48520751:48522672:48522760,	48520633	48520751	48520703	48520703	Nonsense_Mutation	C	G	p.S4349*
ESCA	TCGA-IG-A4P3-01	EPS8L2	ENST00000530636.1,ENST00000524474.1,ENST00000533256.1,ENST00000526909.1,ENST00000533816.1,ENST00000526198.1,ENST00000318562.8	chr11	721564:721691:721902:721991:722400:722500,721564:721691:721902:721991:722090:722165,	721903	721991	721938	721938	Nonsense_Mutation	G	T	p.E311*
ESCA	TCGA-IG-A4QS-01	GOLGB1	ENST00000393667.3,ENST00000482512.1,ENST00000491690.1,ENST00000340645.5	chr3	121383376:121383461:121383772:121383878:121386322:121386457,	121383773	121383878	121383820	121383820	Nonsense_Mutation	G	A	p.Q3210*
ESCA	TCGA-IG-A4QS-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000350494.6,ENST00000542824.1,ENST00000545302.1,ENST00000541748.1,ENST00000351393.6,ENST00000358232.6,ENST00000540766.1,ENST00000442325.2	chr18	33747118:33747185:33750025:33750159:33751009:33751123,	33750026	33750159	33750037	33750037	Nonsense_Mutation	G	A	p.W696*
ESCA	TCGA-IG-A4QS-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
ESCA	TCGA-IG-A50L-01	IGF2R	ENST00000356956.1	chr6	160479937:160480130:160481578:160481749:160482534:160482678,	160481579	160481749	160481680	160481680	Nonsense_Mutation	C	T	p.R1065*
ESCA	TCGA-IG-A51D-01	PREX1	ENST00000371941.3	chr20	47247265:47247332:47248814:47248929:47249033:47249177,	47248815	47248929	47248873	47248873	Nonsense_Mutation	G	T	p.C1524*
ESCA	TCGA-IG-A5B8-01	TAF1B	ENST00000396242.3,ENST00000434858.1	chr2	9994454:9994550:10008404:10008558:10015993:10016147,9994454:9994550:10008404:10008558:10022834:10022934,	10008405	10008558	10008430	10008430	Nonsense_Mutation	C	G	p.S142*
ESCA	TCGA-IG-A5B8-01	KIF20B	ENST00000260753.4,ENST00000394289.2,ENST00000478929.1,ENST00000371728.3	chr10	91488884:91489004:91492659:91492813:91497143:91498374,	91492660	91492813	91492754	91492754	Nonsense_Mutation	C	G	p.S829*
ESCA	TCGA-IG-A5B8-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527461	29527461	Nonsense_Mutation	C	T	p.R304*
ESCA	TCGA-IG-A5B8-01	EXOC3L1	ENST00000564418.1	chr16	67222922:67223083:67223533:67223670:67223873:67224039,	67223534	67223670	67223572	67223572	Nonsense_Mutation	G	C	p.S3*
ESCA	TCGA-IG-A5B8-01	EXOC3L1	ENST00000545725.2,ENST00000562887.1	chr16	67222922:67223098:67223533:67223586:67223873:67224039,67222922:67223083:67223533:67223586:67223873:67224039,	67223534	67223586	67223572	67223572	Nonsense_Mutation	G	C	p.S3*
ESCA	TCGA-IG-A5S3-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53666504:53666641:53668600:53668794:53670403:53670643,	53668601	53668794	53668781	53668781	Nonsense_Mutation	G	T	p.E563*
ESCA	TCGA-IG-A8O2-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60193766	60193766	Nonsense_Mutation	C	A	p.E546*
ESCA	TCGA-IG-A97I-01	DIS3L	ENST00000530537.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66607373:66607553:66610786:66610956:66612908:66613070,	66610787	66610956	66610849	66610849	Nonsense_Mutation	G	T	p.E270*
ESCA	TCGA-IG-A97I-01	GRAMD1B	ENST00000529750.1,ENST00000534764.1,ENST00000532581.1,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123464789:123464874:123465442:123465546:123466649:123466745,	123465443	123465546	123465506	123465506	Nonsense_Mutation	G	A	p.W135*
ESCA	TCGA-JY-A6F8-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
ESCA	TCGA-JY-A6F8-01	SH3GLB1	ENST00000482504.1	chr1	87170577:87170654:87181406:87181548:87185189:87185318,	87181407	87181548	87181419	87181419	Nonsense_Mutation	A	T	p.K29*
ESCA	TCGA-JY-A6F8-01	KRT72	ENST00000537672.2,ENST00000398066.3,ENST00000550829.1,ENST00000293745.2	chr12	52981414:52981635:52984619:52984745:52985247:52985412,	52984620	52984745	52984742	52984742	Nonsense_Mutation	G	A	p.Q323*
ESCA	TCGA-JY-A6FA-01	STRIP1	ENST00000369796.1,ENST00000369795.3,ENST00000485775.1,ENST00000473429.1	chr1	110587636:110587700:110589301:110589373:110590163:110590238,	110589302	110589373	110589335	110589335	Nonsense_Mutation	C	T	p.Q484*
ESCA	TCGA-JY-A6FA-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198*
ESCA	TCGA-JY-A6FA-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000581230.1,ENST00000578804.1,ENST00000579461.1,ENST00000540698.2,ENST00000579996.1,ENST00000450599.2	chr17	62498556:62498667:62499043:62499216:62499305:62499364,	62499044	62499216	62499111	62499111	Nonsense_Mutation	C	A	p.E306*
ESCA	TCGA-JY-A6FD-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
ESCA	TCGA-JY-A6FD-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000294599.4	chr1	3428569:3428692:3431113:3431236:3431965:3432091,	3431114	3431236	3431144	3431144	Nonsense_Mutation	G	A	p.Q275*
ESCA	TCGA-JY-A6FD-01	PPOX	ENST00000539753.1	chr1	161136889:161137024:161140198:161140309:161140409:161140559,161138782:161138973:161140198:161140309:161140409:161140559,161139695:161139814:161140198:161140309:161140409:161140559,161139474:161139510:161140198:161140309:161140409:161140559,	161140199	161140309	161140274	161140274	Nonsense_Mutation	G	T	p.E355*
ESCA	TCGA-JY-A6FD-01	WDR45	ENST00000396681.4,ENST00000473974.1,ENST00000322995.8,ENST00000465382.1,ENST00000376372.3	chrX	48933524:48933604:48935301:48935406:48935495:48935570,48934303:48934412:48935301:48935406:48935495:48935570,48934303:48934409:48935301:48935406:48935495:48935570,	48935302	48935406	48935401	48935401	Nonsense_Mutation	C	A	p.E46*
ESCA	TCGA-JY-A6FD-01	GTF3C2	ENST00000264720.3	chr2	27565857:27566014:27566174:27566445:27579605:27579634,	27566175	27566445	27566340	27566340	Nonsense_Mutation	G	A	p.Q28*
ESCA	TCGA-JY-A6FE-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820588	3820588	Nonsense_Mutation	G	A	p.Q955*
ESCA	TCGA-JY-A6FG-01	UTRN	ENST00000432686.1,ENST00000367526.4,ENST00000417142.1,ENST00000367524.3,ENST00000367545.3	chr6	145118959:145119126:145124171:145124283:145142017:145142154,	145124172	145124283	145124230	145124230	Nonsense_Mutation	C	T	p.R3102*
ESCA	TCGA-JY-A6FH-01	RHBDD1	ENST00000392062.2,ENST00000341329.3,ENST00000491490.1,ENST00000493526.1	chr2	227773537:227773594:227778923:227779067:227860146:227860391,	227778924	227779067	227779064	227779064	Nonsense_Mutation	C	T	p.R285*
ESCA	TCGA-JY-A93C-01	TRAIP	ENST00000482243.1,ENST00000331456.2,ENST00000482582.1	chr3	49879928:49879980:49881233:49881361:49881973:49882013,	49881234	49881361	49881278	49881278	Nonsense_Mutation	G	A	p.Q122*
ESCA	TCGA-JY-A93C-01	TRAIP	ENST00000488860.1	chr3	49879928:49879980:49881233:49881450:49881973:49882013,	49881234	49881450	49881278	49881278	Nonsense_Mutation	G	A	p.Q122*
ESCA	TCGA-JY-A93C-01	ARHGAP32	ENST00000524655.1,ENST00000533509.1,ENST00000310343.9	chr11	128868213:128868363:128910822:128910904:128932174:128932252,	128910823	128910904	128910853	128910853	Nonsense_Mutation	G	A	p.Q325*
ESCA	TCGA-JY-A93C-01	NFX1	ENST00000379521.4,ENST00000318524.6,ENST00000379540.3	chr9	33307191:33307297:33311103:33311175:33313651:33313791,	33311104	33311175	33311168	33311168	Nonsense_Mutation	C	T	p.R481*
ESCA	TCGA-JY-A93D-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48567831:48567941:48619819:48619970:48626749:48626884,	48619820	48619970	48619925	48619925	Nonsense_Mutation	T	G	p.Y4820*
ESCA	TCGA-JY-A93D-01	GSK3B	ENST00000264235.8,ENST00000316626.5	chr3	119595259:119595355:119624601:119624699:119631550:119631657,	119624602	119624699	119624622	119624622	Nonsense_Mutation	G	A	p.Q265*
ESCA	TCGA-JY-A93E-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
ESCA	TCGA-JY-A93E-01	TEKT1	ENST00000575592.1,ENST00000338694.2,ENST00000535086.1	chr17	6703299:6703553:6704065:6704262:6716149:6716335,	6704066	6704262	6704115	6704115	Nonsense_Mutation	G	A	p.Q334*
ESCA	TCGA-JY-A93F-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603524	138603524	Nonsense_Mutation	A	T	p.L283*
ESCA	TCGA-L5-A43C-01	ATP8A1	ENST00000381668.5,ENST00000514372.1,ENST00000506602.1,ENST00000264449.10	chr4	42425633:42425722:42445581:42445689:42446594:42446651,	42445582	42445689	42445670	42445670	Nonsense_Mutation	C	T	p.W1012*
ESCA	TCGA-L5-A43C-01	CPA5	ENST00000495736.1	chr7	130003281:130003350:130007212:130007831:130008250:130008438,	130007213	130007831	130007803	130007803	Nonsense_Mutation	C	A	p.Y365*
ESCA	TCGA-L5-A43C-01	CPA5	ENST00000485477.1,ENST00000393213.3,ENST00000461828.1,ENST00000474905.1,ENST00000466363.2,ENST00000355388.3	chr7	130007212:130007412:130007746:130007831:130008250:130008438,	130007747	130007831	130007803	130007803	Nonsense_Mutation	C	A	p.Y365*
ESCA	TCGA-L5-A43C-01	RPS26	ENST00000552361.1	chr12	56435923:56435953:56436208:56436386:56437146:56437277,	56436209	56436386	56436329	56436329	Nonsense_Mutation	C	T	p.R42*
ESCA	TCGA-L5-A43C-01	NR2C1	ENST00000545833.1	chr12	95425124:95425264:95434251:95434373:95442843:95443009,95425124:95425264:95434251:95434373:95445537:95445565,95422233:95422285:95434251:95434373:95442843:95443009,	95434252	95434373	95434294	95434294	Nonsense_Mutation	G	T	p.S404*
ESCA	TCGA-L5-A43H-01	ANKMY2	ENST00000306999.2,ENST00000447802.1	chr7	16650173:16650388:16655368:16655529:16664607:16664706,	16655369	16655529	16655488	16655488	Nonsense_Mutation	G	A	p.R138*
ESCA	TCGA-L5-A43H-01	PRLR	ENST00000509140.1,ENST00000397391.3,ENST00000513753.1,ENST00000382002.5,ENST00000231423.3,ENST00000509934.1,ENST00000542609.1,ENST00000514088.1,ENST00000310101.5,ENST00000348262.3	chr5	35070225:35070367:35072676:35072846:35089652:35089722,35070225:35070367:35072676:35072846:35084571:35084741,	35072677	35072846	35072680	35072680	Nonsense_Mutation	C	T	p.W180*
ESCA	TCGA-L5-A43H-01	TFAP2A	ENST00000466073.1	chr6	10400680:10400822:10402724:10402843:10404740:10404827,10398920:10398938:10402724:10402843:10404740:10404827,	10402725	10402843	10402728	10402728	Nonsense_Mutation	C	A	p.E296*
ESCA	TCGA-L5-A43J-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481423	140481423	Nonsense_Mutation	G	A	p.Q119*
ESCA	TCGA-L5-A43J-01	TCHP	ENST00000549550.1,ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110348867:110349040:110350795:110350877:110352246:110352333,	110350796	110350877	110350842	110350842	Nonsense_Mutation	C	T	p.R367*
ESCA	TCGA-L5-A43J-01	FLOT2	ENST00000580805.1,ENST00000580313.1	chr17	27210194:27210249:27211242:27211333:27212629:27212703,27210194:27210249:27211242:27211333:27215962:27216044,27210194:27210249:27211242:27211333:27212874:27212965,	27211243	27211333	27211323	27211323	Nonsense_Mutation	C	A	p.E103*
ESCA	TCGA-L5-A4OE-01	ADAM7	ENST00000520720.1,ENST00000380789.1,ENST00000175238.6	chr8	24350555:24350742:24356748:24356829:24357690:24357769,	24356749	24356829	24356795	24356795	Nonsense_Mutation	C	A	p.S630*
ESCA	TCGA-L5-A4OE-01	MYO3A	ENST00000265944.5,ENST00000543632.1	chr10	26312950:26313016:26315305:26315461:26355903:26356003,	26315306	26315461	26315325	26315325	Nonsense_Mutation	G	T	p.E273*
ESCA	TCGA-L5-A4OE-01	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000533657.1,ENST00000529307.1,ENST00000528856.1,ENST00000531668.1	chr11	34118788:34118843:34119244:34119308:34120849:34120879,	34119245	34119308	34119305	34119305	Nonsense_Mutation	C	T	p.R688*
ESCA	TCGA-L5-A4OE-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472507	92472507	Nonsense_Mutation	C	A	p.E605*
ESCA	TCGA-L5-A4OE-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183518342:183518423:183518898:183519058:183519885:183520056,	183518899	183519058	183519019	183519019	Nonsense_Mutation	G	T	p.E1015*
ESCA	TCGA-L5-A4OG-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107956647	107956647	Nonsense_Mutation	C	T	p.R867*
ESCA	TCGA-L5-A4OG-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91*
ESCA	TCGA-L5-A4OH-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981121	201981121	Nonsense_Mutation	G	A	p.W67*
ESCA	TCGA-L5-A4OH-01	BTN3A1	ENST00000082468.7,ENST00000425234.2,ENST00000289361.6,ENST00000476549.2	chr6	26406136:26406484:26407898:26408180:26409760:26409961,	26407899	26408180	26408018	26408018	Nonsense_Mutation	G	T	p.E185*
ESCA	TCGA-L5-A4OH-01	ASAP1	ENST00000521075.1,ENST00000357668.1,ENST00000518721.1,ENST00000524367.1	chr8	131181237:131181313:131191509:131191595:131192996:131193108,	131191510	131191595	131191524	131191524	Nonsense_Mutation	G	T	p.Y244*
ESCA	TCGA-L5-A4OI-01	NCAPD2	ENST00000382457.4,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6626958:6627125:6630151:6630276:6630963:6631099,	6630152	6630276	6630171	6630171	Nonsense_Mutation	C	T	p.R537*
ESCA	TCGA-L5-A4OI-01	NCAPD2	ENST00000542472.1	chr12	6626958:6627125:6630135:6630276:6630963:6631099,	6630136	6630276	6630171	6630171	Nonsense_Mutation	C	T	p.R537*
ESCA	TCGA-L5-A4OI-01	TEK	ENST00000380036.4	chr9	27173219:27173360:27180237:27180366:27183456:27183608,	27180238	27180366	27180305	27180305	Nonsense_Mutation	T	A	p.C323*
ESCA	TCGA-L5-A4OI-01	STXBP1	ENST00000373299.1	chr9	130442435:130442521:130444684:130444839:130453053:130454995,	130444685	130444839	130444703	130444703	Nonsense_Mutation	G	A	p.W522*
ESCA	TCGA-L5-A4OI-01	BCAP29	ENST00000445771.2,ENST00000442065.1,ENST00000466094.1,ENST00000482371.1,ENST00000486326.1	chr7	107220716:107220746:107221203:107221309:107224326:107224427,	107221204	107221309	107221266	107221266	Nonsense_Mutation	G	T	p.G17*
ESCA	TCGA-L5-A4OI-01	BCAP29	ENST00000479917.1	chr7	107220716:107220746:107221090:107221309:107224326:107224427,	107221091	107221309	107221266	107221266	Nonsense_Mutation	G	T	p.G17*
ESCA	TCGA-L5-A4OI-01	CD160	ENST00000401557.3,ENST00000369288.2	chr1	145698952:145699090:145704016:145704343:145706685:145706827,	145704017	145704343	145704302	145704302	Nonsense_Mutation	G	A	p.R39*
ESCA	TCGA-L5-A4OI-01	SLC17A4	ENST00000377905.4	chr6	25769212:25769418:25770294:25770528:25770611:25770699,	25770295	25770528	25770394	25770394	Nonsense_Mutation	G	T	p.G133*
ESCA	TCGA-L5-A4OI-01	CHL1	ENST00000453040.1,ENST00000397491.2,ENST00000256509.2	chr3	436375:436555:439909:440068:440699:440831,	439910	440068	439987	439987	Nonsense_Mutation	G	T	p.E1058*
ESCA	TCGA-L5-A4OI-01	GUCY2C	ENST00000261170.3,ENST00000535803.1	chr12	14829787:14829905:14832590:14832687:14834289:14834411,	14832591	14832687	14832637	14832637	Nonsense_Mutation	G	A	p.R262*
ESCA	TCGA-L5-A4OI-01	CCDC57	ENST00000389641.4,ENST00000327026.3,ENST00000419322.2,ENST00000392347.1,ENST00000392343.3	chr17	80115623:80115824:80121075:80121233:80129576:80129608,	80121076	80121233	80121090	80121090	Nonsense_Mutation	G	A	p.R676*
ESCA	TCGA-L5-A4OI-01	TXNL1	ENST00000217515.6,ENST00000540155.1,ENST00000590954.1,ENST00000587807.1	chr18	54270128:54270287:54278223:54278328:54281654:54281722,	54278224	54278328	54278226	54278226	Nonsense_Mutation	G	A	p.R280*
ESCA	TCGA-L5-A4OI-01	TMEM70	ENST00000312184.5	chr8	74888539:74888726:74890990:74891096:74893389:74893601,	74890991	74891096	74891018	74891018	Nonsense_Mutation	C	T	p.R80*
ESCA	TCGA-L5-A4OI-01	TMEM70	ENST00000517439.1	chr8	74888539:74888726:74890990:74891110:74893389:74893601,	74890991	74891110	74891018	74891018	Nonsense_Mutation	C	T	p.R80*
ESCA	TCGA-L5-A4OI-01	NCAPG2	ENST00000449727.2,ENST00000409423.1,ENST00000409339.3,ENST00000467785.1,ENST00000356309.3,ENST00000432615.1	chr7	158482510:158482645:158483259:158483414:158485533:158485648,	158483260	158483414	158483385	158483385	Nonsense_Mutation	G	A	p.R138*
ESCA	TCGA-L5-A4OI-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000518509.1,ENST00000340930.3,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141727787:141727808:141745349:141745554:141749116:141749206,	141745350	141745554	141745480	141745480	Nonsense_Mutation	G	A	p.R634*
ESCA	TCGA-L5-A4OJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101252	27101252	Nonsense_Mutation	C	T	p.Q1512*
ESCA	TCGA-L5-A4OJ-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107300162	107300162	Nonsense_Mutation	G	A	p.Q266*
ESCA	TCGA-L5-A4OJ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198*
ESCA	TCGA-L5-A4OJ-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789596	3789596	Nonsense_Mutation	G	T	p.C1421*
ESCA	TCGA-L5-A4ON-01	LOXL2	ENST00000389131.3,ENST00000520925.1	chr8	23179642:23179794:23185894:23186078:23190913:23191008,	23185895	23186078	23186066	23186066	Nonsense_Mutation	G	A	p.R327*
ESCA	TCGA-L5-A4ON-01	LOXL2	ENST00000520349.1	chr8	23179642:23179794:23185894:23186099:23190913:23191008,	23185895	23186099	23186066	23186066	Nonsense_Mutation	G	A	p.R327*
ESCA	TCGA-L5-A4ON-01	SLC30A9	ENST00000513699.1,ENST00000505523.1,ENST00000264451.7	chr4	42077673:42077803:42080228:42080342:42088098:42088386,	42080229	42080342	42080286	42080286	Nonsense_Mutation	G	T	p.E536*
ESCA	TCGA-L5-A4OO-01	FAM193A	ENST00000513350.1,ENST00000512465.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000513898.1,ENST00000324666.5	chr4	2664835:2665015:2673847:2674099:2691232:2691277,	2673848	2674099	2674072	2674072	Nonsense_Mutation	T	G	p.Y477*
ESCA	TCGA-L5-A4OP-01	PPP1R13B	ENST00000202556.9,ENST00000554136.1,ENST00000557082.1,ENST00000555734.1	chr14	104245091:104245158:104251131:104251251:104263707:104263855,	104251132	104251251	104251168	104251168	Nonsense_Mutation	G	A	p.R81*
ESCA	TCGA-L5-A4OQ-01	MOV10	ENST00000468624.1,ENST00000496577.1,ENST00000369645.1,ENST00000413052.2,ENST00000369644.1,ENST00000357443.2	chr1	113232615:113232720:113234286:113234421:113235382:113235551,	113234287	113234421	113234375	113234375	Nonsense_Mutation	C	T	p.Q253*
ESCA	TCGA-L5-A4OQ-01	KMT2C	ENST00000558084.1,ENST00000360104.3,ENST00000262189.6,ENST00000355193.2,ENST00000424877.1,ENST00000473186.1	chr7	151847984:151848092:151848526:151848666:151849789:151850039,	151848527	151848666	151848559	151848559	Nonsense_Mutation	T	A	p.K4269*
ESCA	TCGA-L5-A4OR-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1,ENST00000414826.1	chr3	175181188:175181281:175184766:175184972:175189426:175189546,	175184767	175184972	175184904	175184904	Nonsense_Mutation	C	T	p.R489*
ESCA	TCGA-L5-A4OS-01	POLR2A	ENST00000322644.6,ENST00000576553.1	chr17	7414833:7414907:7415129:7415333:7415476:7415663,	7415130	7415333	7415274	7415274	Nonsense_Mutation	C	T	p.R1416*
ESCA	TCGA-L5-A4OT-01	DNAH5	ENST00000265104.4	chr5	13727615:13727765:13729547:13729669:13735239:13735430,	13729548	13729669	13729594	13729594	Nonsense_Mutation	A	T	p.L3946*
ESCA	TCGA-L5-A4OT-01	ACCSL	ENST00000378832.1,ENST00000527145.1	chr11	44074540:44074618:44074955:44075056:44076751:44076841,	44074956	44075056	44074968	44074968	Nonsense_Mutation	C	T	p.R321*
ESCA	TCGA-L5-A4OT-01	SCAMP3	ENST00000490999.1,ENST00000302631.3,ENST00000355379.3,ENST00000465312.1,ENST00000472397.1	chr1	155227088:155227177:155227288:155227448:155228616:155228683,	155227289	155227448	155227351	155227351	Nonsense_Mutation	C	T	p.W179*
ESCA	TCGA-L5-A4OU-01	SAE1	ENST00000270225.7,ENST00000414294.2,ENST00000413379.3,ENST00000594144.1,ENST00000596995.1,ENST00000392776.3,ENST00000597808.1,ENST00000600706.1,ENST00000594526.1	chr19	47646750:47646862:47653458:47653632:47656154:47656257,	47653459	47653632	47653535	47653535	Nonsense_Mutation	T	A	p.L96*
ESCA	TCGA-L5-A4OX-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876274	27876274	Nonsense_Mutation	C	A	p.G785*
ESCA	TCGA-L5-A88S-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
ESCA	TCGA-L5-A88T-01	NOTCH1	ENST00000277541.6	chr9	139409934:139410168:139410432:139410546:139411723:139411837,	139410433	139410546	139410452	139410452	Nonsense_Mutation	G	C	p.Y550*
ESCA	TCGA-L5-A88V-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12126085	12126085	Nonsense_Mutation	G	A	p.W2019*
ESCA	TCGA-L5-A88W-01	PIP5K1A	ENST00000368888.4,ENST00000349792.5,ENST00000409426.1,ENST00000368890.4,ENST00000489625.1,ENST00000441902.2	chr1	151214913:151215043:151219395:151219441:151220338:151220364,	151219396	151219441	151219428	151219428	Nonsense_Mutation	C	T	p.Q167*
ESCA	TCGA-L5-A88Y-01	MTHFD1	ENST00000557370.2,ENST00000545908.1,ENST00000556284.1,ENST00000216605.8	chr14	64916328:64916340:64920471:64920579:64921440:64921593,	64920472	64920579	64920550	64920550	Nonsense_Mutation	C	T	p.Q846*
ESCA	TCGA-L5-A891-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
ESCA	TCGA-L5-A891-01	MVB12A	ENST00000392702.2	chr19	17533252:17533267:17534501:17534608:17534814:17534876,	17534502	17534608	17534606	17534606	Nonsense_Mutation	C	T	p.Q171*
ESCA	TCGA-L5-A893-01	TMTC3	ENST00000266712.6	chr12	88584229:88584399:88586380:88586607:88588614:88593664,	88586381	88586607	88586397	88586397	Nonsense_Mutation	A	T	p.K575*
ESCA	TCGA-L5-A8NE-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859031	32859031	Nonsense_Mutation	C	T	p.Q119*
ESCA	TCGA-L5-A8NF-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715895	68715895	Nonsense_Mutation	C	A	p.S228*
ESCA	TCGA-L5-A8NF-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40631848:40631905:40634284:40634419:40637351:40637483,	40634285	40634419	40634305	40634305	Nonsense_Mutation	G	T	p.E198*
ESCA	TCGA-L5-A8NF-01	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82126024	82126024	Nonsense_Mutation	T	A	p.K60*
ESCA	TCGA-L5-A8NF-01	PKD1	ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2143811:2144014:2144092:2144211:2147148:2147242,	2144093	2144211	2144123	2144123	Nonsense_Mutation	G	A	p.Q3530*
ESCA	TCGA-L5-A8NF-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38266203:38266472:38320073:38320592:38357092:38357470,	38320074	38320592	38320271	38320271	Nonsense_Mutation	C	A	p.E234*
ESCA	TCGA-L5-A8NH-01	DCDC1	ENST00000597505.1	chr11	31159238:31159331:31262996:31263163:31287053:31287147,	31262997	31263163	31263095	31263095	Nonsense_Mutation	C	A	p.G375*
ESCA	TCGA-L5-A8NI-01	RUFY3	ENST00000417478.2,ENST00000536664.1,ENST00000381006.3,ENST00000502653.1,ENST00000226328.4	chr4	71648807:71648900:71650512:71650596:71654522:71654690,	71650513	71650596	71650543	71650543	Nonsense_Mutation	C	T	p.Q340*
ESCA	TCGA-L5-A8NJ-01	EVI5	ENST00000468580.1,ENST00000543509.1,ENST00000491940.1,ENST00000370331.1,ENST00000540033.1	chr1	93089732:93089891:93091350:93091491:93101758:93101893,	93091351	93091491	93091470	93091470	Nonsense_Mutation	C	A	p.E501*
ESCA	TCGA-L5-A8NJ-01	ALDH1A1	ENST00000446946.1	chr9	75555063:75555168:75567850:75567930:75695282:75695311,75555063:75555168:75567850:75567930:75653456:75653638,	75567851	75567930	75567891	75567891	Nonsense_Mutation	A	C	p.L9*
ESCA	TCGA-L5-A8NK-01	CFH	ENST00000466229.1,ENST00000367429.4,ENST00000470918.1	chr1	196706037:196706136:196706604:196706790:196709748:196709922,	196706605	196706790	196706631	196706631	Nonsense_Mutation	C	T	p.Q875*
ESCA	TCGA-L5-A8NK-01	ANXA5	ENST00000506395.1	chr4	122599048:122599105:122599506:122599649:122602825:122602916,	122599507	122599649	122599640	122599640	Nonsense_Mutation	G	C	p.S135*
ESCA	TCGA-L5-A8NK-01	ANXA5	ENST00000296511.5,ENST00000511552.1,ENST00000501272.2	chr4	122599048:122599105:122599569:122599649:122602825:122602916,	122599570	122599649	122599640	122599640	Nonsense_Mutation	G	C	p.S135*
ESCA	TCGA-L5-A8NK-01	C4orf36	ENST00000504008.1,ENST00000295898.3,ENST00000506308.1,ENST00000473559.1	chr4	87809023:87809046:87809273:87809428:87811200:87811291,87809023:87809046:87809273:87809428:87812608:87812746,	87809274	87809428	87809349	87809349	Nonsense_Mutation	C	A	p.E49*
ESCA	TCGA-L5-A8NL-01	EIF2B5	ENST00000491144.1	chr3	183854399:183854524:183855407:183855863:183855953:183856034,	183855408	183855863	183855472	183855472	Nonsense_Mutation	C	T	p.R129*
ESCA	TCGA-L5-A8NM-01	CTRL	ENST00000574481.1,ENST00000571044.1	chr16	67964822:67964902:67965000:67965104:67965703:67965765,	67965001	67965104	67965003	67965003	Nonsense_Mutation	G	A	p.Q52*
ESCA	TCGA-L5-A8NM-01	PIGR	ENST00000356495.4	chr1	207110986:207111096:207112463:207112808:207113833:207113929,	207112464	207112808	207112680	207112680	Nonsense_Mutation	G	A	p.Q58*
ESCA	TCGA-L5-A8NM-01	ITGBL1	ENST00000376180.3	chr13	102106233:102106451:102220049:102220196:102227774:102227897,	102220050	102220196	102220154	102220154	Nonsense_Mutation	C	T	p.Q141*
ESCA	TCGA-L5-A8NM-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748969	43748969	Nonsense_Mutation	C	A	p.E608*
ESCA	TCGA-L5-A8NM-01	IL6	ENST00000406575.1,ENST00000404625.1,ENST00000426291.1,ENST00000258743.5	chr7	22766858:22766900:22767062:22767253:22768311:22768425,	22767063	22767253	22767197	22767197	Nonsense_Mutation	C	T	p.R52*
ESCA	TCGA-L5-A8NM-01	IL6	ENST00000401630.3	chr7	22766858:22766900:22767131:22767253:22768311:22768425,	22767132	22767253	22767197	22767197	Nonsense_Mutation	C	T	p.R52*
ESCA	TCGA-L5-A8NM-01	DHRS1	ENST00000559483.1,ENST00000288111.7,ENST00000561273.1,ENST00000558340.1,ENST00000396813.1	chr14	24765714:24765794:24765943:24766087:24768162:24768336,	24765944	24766087	24766024	24766024	Nonsense_Mutation	G	A	p.R72*
ESCA	TCGA-L5-A8NM-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58117515	58117515	Nonsense_Mutation	C	T	p.R208*
ESCA	TCGA-L5-A8NM-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82578944	82578944	Nonsense_Mutation	G	A	p.Q3654*
ESCA	TCGA-L5-A8NM-01	CD22	ENST00000601732.1	chr19	35820114:35820133:35823555:35823827:35827051:35827244,	35823556	35823827	35823799	35823799	Nonsense_Mutation	G	A	p.W128*
ESCA	TCGA-L5-A8NM-01	CD22	ENST00000419549.2	chr19	35820114:35820133:35823455:35823827:35827051:35827244,	35823456	35823827	35823799	35823799	Nonsense_Mutation	G	A	p.W128*
ESCA	TCGA-L5-A8NM-01	CD22	ENST00000600905.1	chr19	35820114:35820133:35823496:35823827:35826938:35826945,	35823497	35823827	35823799	35823799	Nonsense_Mutation	G	A	p.W128*
ESCA	TCGA-L5-A8NM-01	CD22	ENST00000596492.1	chr19	35820114:35820133:35822921:35823827:35826938:35826945,	35822922	35823827	35823799	35823799	Nonsense_Mutation	G	A	p.W128*
ESCA	TCGA-L5-A8NM-01	POU5F1	ENST00000441888.3,ENST00000513407.1,ENST00000259915.8,ENST00000512818.1,ENST00000606567.1,ENST00000471529.2	chr6	31132128:31132644:31132904:31133063:31133347:31133478,	31132905	31133063	31132949	31132949	Nonsense_Mutation	G	A	p.Q62*
ESCA	TCGA-L5-A8NM-01	RRM2B	ENST00000251810.3,ENST00000522368.1,ENST00000395912.2	chr8	103231041:103231175:103236273:103236368:103237112:103237246,	103236274	103236368	103236304	103236304	Nonsense_Mutation	G	A	p.R174*
ESCA	TCGA-L5-A8NM-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135777991:135778174:135779037:135779204:135779797:135779841,	135779038	135779204	135779172	135779172	Nonsense_Mutation	G	A	p.R692*
ESCA	TCGA-L5-A8NM-01	KIDINS220	ENST00000489024.1,ENST00000427284.1,ENST00000496383.1,ENST00000418530.1,ENST00000256707.3,ENST00000319688.5,ENST00000473731.1,ENST00000488729.1	chr2	8931189:8931354:8933939:8934117:8936900:8936999,	8933940	8934117	8934033	8934033	Nonsense_Mutation	G	A	p.R395*
ESCA	TCGA-L5-A8NM-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17641107	17641107	Nonsense_Mutation	C	A	p.G16*
ESCA	TCGA-L5-A8NQ-01	DGKD	ENST00000430834.1,ENST00000264057.2,ENST00000490764.1,ENST00000409813.3	chr2	234354268:234354408:234355357:234355442:234356732:234356827,	234355358	234355442	234355361	234355361	Nonsense_Mutation	G	A	p.W446*
ESCA	TCGA-L5-A8NQ-01	SERGEF	ENST00000525422.1,ENST00000532546.1,ENST00000529151.1,ENST00000527494.1,ENST00000528200.1,ENST00000265965.5,ENST00000532265.1,ENST00000530613.1,ENST00000529728.1,ENST00000532389.1	chr11	17899754:17899791:18014477:18014540:18017342:18017382,18010233:18010302:18014477:18014540:18017342:18017382,	18014478	18014540	18014501	18014501	Nonsense_Mutation	G	C	p.S221*
ESCA	TCGA-L5-A8NQ-01	PPP1R16B	ENST00000299824.1,ENST00000373331.2	chr20	37536448:37536578:37536670:37536836:37546799:37551667,	37536671	37536836	37536771	37536771	Nonsense_Mutation	C	T	p.Q377*
ESCA	TCGA-L5-A8NQ-01	PCSK6	ENST00000348070.1,ENST00000561177.1,ENST00000358417.3,ENST00000398185.2,ENST00000560921.1	chr15	101847495:101847530:101853580:101853710:101858523:101858627,	101853581	101853710	101853633	101853633	Nonsense_Mutation	C	A	p.E882*
ESCA	TCGA-L5-A8NQ-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41267150:41267352:41268698:41268843:41274831:41274935,	41268699	41268843	41268822	41268822	Nonsense_Mutation	A	T	p.K354*
ESCA	TCGA-L5-A8NQ-01	COG4	ENST00000323786.5,ENST00000562200.1,ENST00000393612.4,ENST00000482252.1,ENST00000534772.1,ENST00000564653.1	chr16	70548268:70548412:70551528:70551643:70553551:70553634,	70551529	70551643	70551570	70551570	Nonsense_Mutation	C	A	p.E110*
ESCA	TCGA-L5-A8NR-01	USP5	ENST00000229268.8,ENST00000389231.5	chr12	6965180:6965314:6965468:6965614:6965870:6966055,	6965469	6965614	6965536	6965536	Nonsense_Mutation	G	A	p.W169*
ESCA	TCGA-L5-A8NR-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616855	116616855	Nonsense_Mutation	G	T	p.Y447*
ESCA	TCGA-L5-A8NR-01	SMUG1	ENST00000506595.1,ENST00000243112.5,ENST00000513838.1,ENST00000514685.1	chr12	54575254:54575431:54576287:54576407:54577439:54577717,	54576288	54576407	54576323	54576323	Nonsense_Mutation	G	A	p.R124*
ESCA	TCGA-L5-A8NR-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87614739:87614827:87622393:87622954:87637682:87637778,	87622394	87622954	87622936	87622936	Nonsense_Mutation	G	T	p.E393*
ESCA	TCGA-L5-A8NR-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50244138:50244222:50245518:50245611:50255881:50256043,	50245519	50245611	50245527	50245527	Nonsense_Mutation	C	A	p.E585*
ESCA	TCGA-L5-A8NR-01	ACSL5	ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000479936.1,ENST00000354655.4	chr10	114154675:114154860:114158658:114158767:114164268:114164333,	114158659	114158767	114158683	114158683	Nonsense_Mutation	C	T	p.Q61*
ESCA	TCGA-L5-A8NR-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99969226	99969226	Nonsense_Mutation	C	A	p.S452*
ESCA	TCGA-L5-A8NS-01	IFT20	ENST00000585313.1,ENST00000585089.1,ENST00000395418.3	chr17	26655362:26655759:26656198:26656302:26657468:26657554,	26656199	26656302	26656251	26656251	Nonsense_Mutation	G	C	p.S128*
ESCA	TCGA-L5-A8NS-01	NIT1	ENST00000368009.2,ENST00000368008.1	chr1	161087929:161088029:161088575:161088671:161088923:161089031,161087903:161087999:161088575:161088671:161088923:161089031,161087907:161088015:161088575:161088671:161088923:161089031,161087907:161087968:161088575:161088671:161088923:161089031,	161088576	161088671	161088650	161088650	Nonsense_Mutation	C	G	p.S26*
ESCA	TCGA-L5-A8NS-01	AZI2	ENST00000479665.1,ENST00000457172.1,ENST00000295748.3,ENST00000414162.1,ENST00000420543.2,ENST00000334100.6,ENST00000463512.1	chr3	28373859:28373918:28378227:28378376:28379427:28379527,	28378228	28378376	28378343	28378343	Nonsense_Mutation	C	T	p.W158*
ESCA	TCGA-L5-A8NS-01	AVL9	ENST00000404479.1,ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32582866:32582873:32584305:32584391:32588458:32588530,	32584306	32584391	32584374	32584374	Nonsense_Mutation	C	T	p.R95*
ESCA	TCGA-L5-A8NS-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216284011:216284108:216285395:216285524:216286813:216286966,	216285396	216285524	216285436	216285436	Nonsense_Mutation	G	T	p.C545*
ESCA	TCGA-L5-A8NS-01	CA14	ENST00000369111.4,ENST00000483993.2	chr1	150234923:150235019:150235202:150235269:150235440:150235596,	150235203	150235269	150235229	150235229	Nonsense_Mutation	T	G	p.Y174*
ESCA	TCGA-L5-A8NS-01	XPOT	ENST00000332707.5,ENST00000400935.2	chr12	64810477:64810534:64811825:64811895:64812655:64812874,	64811826	64811895	64811879	64811879	Nonsense_Mutation	C	G	p.S85*
ESCA	TCGA-L5-A8NS-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18853529:18853776:18856750:18856973:18858774:18858929,	18856751	18856973	18856783	18856783	Nonsense_Mutation	T	A	p.K2063*
ESCA	TCGA-L5-A8NS-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31812257:31812408:31814985:31815101:31815199:31815350,	31814986	31815101	31815069	31815069	Nonsense_Mutation	G	A	p.R331*
ESCA	TCGA-L5-A8NT-01	DNAJC24	ENST00000465995.1	chr11	31429656:31429877:31436357:31436496:31447833:31447902,31392353:31392406:31436357:31436496:31447833:31447902,	31436358	31436496	31436406	31436406	Nonsense_Mutation	G	T	p.E53*
ESCA	TCGA-L5-A8NV-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
ESCA	TCGA-L5-A8NV-01	FAM208A	ENST00000355628.5,ENST00000493960.2	chr3	56705627:56705720:56707607:56707753:56716703:56717045,	56707608	56707753	56707745	56707745	Nonsense_Mutation	G	A	p.Q114*
ESCA	TCGA-L5-A8NV-01	RPTOR	ENST00000570891.1,ENST00000537330.1,ENST00000306801.3,ENST00000574767.1,ENST00000577161.1,ENST00000544334.2	chr17	78681640:78681799:78704359:78704506:78727809:78727904,	78704360	78704506	78704474	78704474	Nonsense_Mutation	C	T	p.Q208*
ESCA	TCGA-L7-A56G-01	DDR1	ENST00000513514.1	chr6	30861131:30861200:30862364:30862448:30864790:30864823,	30862365	30862448	30862388	30862388	Nonsense_Mutation	C	T	p.Q485*
ESCA	TCGA-L7-A56G-01	DDR1	ENST00000465966.1	chr6	30861131:30861200:30862282:30862448:30864790:30864823,	30862283	30862448	30862388	30862388	Nonsense_Mutation	C	T	p.Q485*
ESCA	TCGA-LN-A49L-01	PARPBP	ENST00000543784.1	chr12	102547646:102547754:102558215:102558386:102559506:102559661,102517765:102517819:102558215:102558386:102559506:102559661,	102558216	102558386	102558360	102558360	Nonsense_Mutation	C	T	p.R133*
ESCA	TCGA-LN-A49L-01	TTC28	ENST00000397906.2	chr22	28501266:28501790:28503049:28504391:28559079:28559587,	28503050	28504391	28503690	28503690	Nonsense_Mutation	G	A	p.R715*
ESCA	TCGA-LN-A49L-01	EMC1	ENST00000375199.3,ENST00000477853.1,ENST00000375208.3	chr1	19557754:19557916:19559117:19559267:19559429:19559629,	19559118	19559267	19559220	19559220	Nonsense_Mutation	A	T	p.Y560*
ESCA	TCGA-LN-A49L-01	MICALL1	ENST00000424008.1	chr22	38333086:38333201:38333752:38333826:38336715:38337194,	38333753	38333826	38333778	38333778	Nonsense_Mutation	G	T	p.E817*
ESCA	TCGA-LN-A49L-01	MICALL1	ENST00000215957.6,ENST00000402631.1	chr22	38333086:38333201:38333752:38333799:38336715:38337194,	38333753	38333799	38333778	38333778	Nonsense_Mutation	G	T	p.E817*
ESCA	TCGA-LN-A49L-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170511876:170511960:170520250:170520348:170523158:170523255,	170520251	170520348	170520292	170520292	Nonsense_Mutation	G	A	p.R91*
ESCA	TCGA-LN-A49L-01	NAE1	ENST00000290810.3,ENST00000394074.2,ENST00000379463.2,ENST00000359087.4	chr16	66844599:66844675:66847466:66847600:66847689:66847749,	66847467	66847600	66847533	66847533	Nonsense_Mutation	A	C	p.L317*
ESCA	TCGA-LN-A49M-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289088	6289088	Nonsense_Mutation	C	G	p.S101*
ESCA	TCGA-LN-A49M-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000389398.5	chr16	22145688:22145759:22149680:22149833:22151474:22151565,	22149681	22149833	22149768	22149768	Nonsense_Mutation	C	T	p.Q743*
ESCA	TCGA-LN-A49M-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000377246.3	chr13	78191733:78191793:78191937:78191997:78192138:78192195,	78191938	78191997	78191993	78191993	Nonsense_Mutation	C	T	p.Q481*
ESCA	TCGA-LN-A49M-01	ADCK2	ENST00000072869.4,ENST00000476491.1,ENST00000498423.1,ENST00000483369.1	chr7	140374410:140374557:140378954:140379083:140380841:140380937,	140378955	140379083	140378976	140378976	Nonsense_Mutation	C	T	p.Q368*
ESCA	TCGA-LN-A49M-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153588357:153588955:153589675:153589938:153590037:153590155,	153589676	153589938	153589759	153589759	Nonsense_Mutation	C	A	p.E1042*
ESCA	TCGA-LN-A49M-01	DENND2A	ENST00000537639.1,ENST00000496613.1,ENST00000275884.6,ENST00000492720.1,ENST00000461883.1	chr7	140268562:140268613:140269444:140269538:140273607:140273805,	140269445	140269538	140269453	140269453	Nonsense_Mutation	G	C	p.S511*
ESCA	TCGA-LN-A49M-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
ESCA	TCGA-LN-A49O-01	UCKL1	ENST00000369908.5,ENST00000369892.3,ENST00000354216.6,ENST00000430743.1	chr20	62572169:62572209:62572302:62572396:62572462:62572561,	62572303	62572396	62572378	62572378	Nonsense_Mutation	G	A	p.R364*
ESCA	TCGA-LN-A49O-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20766666:20766763:20767937:20768078:20778605:20778762,	20767938	20768078	20768053	20768053	Nonsense_Mutation	C	T	p.R948*
ESCA	TCGA-LN-A49P-01	TIMM44	ENST00000595831.1	chr19	7998973:7999123:7999949:8000030:8002911:8003082,7998973:7999126:7999949:8000030:8002911:8003082,	7999950	8000030	7999973	7999973	Nonsense_Mutation	C	A	p.E124*
ESCA	TCGA-LN-A49P-01	TIMM44	ENST00000595876.1	chr19	7998973:7999123:7999949:8000138:8002911:8003082,	7999950	8000138	7999973	7999973	Nonsense_Mutation	C	A	p.E124*
ESCA	TCGA-LN-A49P-01	EFCAB1	ENST00000433756.1,ENST00000523092.1	chr8	49642322:49642430:49643098:49643203:49647652:49647791,	49643099	49643203	49643126	49643126	Nonsense_Mutation	G	A	p.R46*
ESCA	TCGA-LN-A49R-01	MXD1	ENST00000435990.1,ENST00000264444.2	chr2	70143255:70143352:70148867:70148897:70162482:70162597,	70148868	70148897	70148870	70148870	Nonsense_Mutation	C	G	p.S59*
ESCA	TCGA-LN-A49R-01	UBE2L6	ENST00000528275.1,ENST00000527022.1,ENST00000287156.4,ENST00000340573.4,ENST00000526659.1	chr11	57319931:57319982:57321909:57322096:57327809:57327905,	57321910	57322096	57322082	57322082	Nonsense_Mutation	G	T	p.Y46*
ESCA	TCGA-LN-A49R-01	RMND5B	ENST00000507575.1	chr5	177558237:177558377:177565108:177565259:177569583:177569614,177562173:177562313:177565108:177565259:177569583:177569614,177558035:177558055:177565108:177565259:177569583:177569614,	177565109	177565259	177565148	177565148	Nonsense_Mutation	G	T	p.E10*
ESCA	TCGA-LN-A49R-01	RMND5B	ENST00000512663.1	chr5	177558237:177558377:177565108:177565397:177569583:177569614,	177565109	177565397	177565148	177565148	Nonsense_Mutation	G	T	p.E10*
ESCA	TCGA-LN-A49S-01	ANO5	ENST00000324559.8	chr11	22279225:22279300:22281064:22281287:22283674:22283844,	22281065	22281287	22281188	22281188	Nonsense_Mutation	C	T	p.Q511*
ESCA	TCGA-LN-A49S-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
ESCA	TCGA-LN-A49S-01	SLC7A7	ENST00000397532.3,ENST00000397528.4,ENST00000555702.1,ENST00000554517.1,ENST00000556350.1,ENST00000285850.7,ENST00000554061.1,ENST00000397529.2	chr14	23244652:23244749:23245041:23245145:23245403:23245441,	23245042	23245145	23245096	23245096	Nonsense_Mutation	G	C	p.S315*
ESCA	TCGA-LN-A49S-01	NDUFAF7	ENST00000483999.1	chr2	37464899:37464978:37468720:37468934:37469777:37469836,	37468721	37468934	37468805	37468805	Nonsense_Mutation	C	T	p.Q165*
ESCA	TCGA-LN-A49U-01	ACSS2	ENST00000477932.1,ENST00000253382.5,ENST00000491533.1,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33508341:33508512:33508808:33508942:33509132:33509221,	33508809	33508942	33508850	33508850	Nonsense_Mutation	G	A	p.W395*
ESCA	TCGA-LN-A49U-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579315	Nonsense_Mutation	G	T	p.C124*
ESCA	TCGA-LN-A49U-01	ZNF451	ENST00000357489.3,ENST00000370706.4	chr6	57017018:57017149:57018658:57018845:57025881:57025950,	57018659	57018845	57018677	57018677	Nonsense_Mutation	C	T	p.Q968*
ESCA	TCGA-LN-A49V-01	DDX3X	ENST00000441189.2,ENST00000399959.2,ENST00000478993.1,ENST00000542215.1	chrX	41196661:41196718:41198288:41198336:41200736:41200869,	41198289	41198336	41198321	41198321	Nonsense_Mutation	C	T	p.R46*
ESCA	TCGA-LN-A49X-01	CCDC124	ENST00000597436.1	chr19	18045904:18046000:18047218:18047388:18053464:18053654,	18047219	18047388	18047332	18047332	Nonsense_Mutation	G	T	p.E35*
ESCA	TCGA-LN-A49Y-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67167031:67167136:67168159:67168390:67168538:67168670,	67168160	67168390	67168163	67168163	Nonsense_Mutation	C	A	p.E139*
ESCA	TCGA-LN-A49Y-01	INPP5F	ENST00000361976.2	chr10	121564895:121564973:121565871:121565992:121567443:121567572,	121565872	121565992	121565957	121565957	Nonsense_Mutation	C	T	p.Q469*
ESCA	TCGA-LN-A49Y-01	NDC80	ENST00000261597.4	chr18	2589202:2589309:2590016:2590161:2595414:2595620,	2590017	2590161	2590098	2590098	Nonsense_Mutation	G	T	p.E318*
ESCA	TCGA-LN-A49Y-01	JAKMIP1	ENST00000409021.3,ENST00000409371.3	chr4	6043885:6043954:6050583:6050649:6051545:6051599,	6050584	6050649	6050610	6050610	Nonsense_Mutation	C	A	p.G668*
ESCA	TCGA-LN-A49Y-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951371	102951371	Nonsense_Mutation	C	T	p.R602*
ESCA	TCGA-LN-A4A1-01	ITGA8	ENST00000378076.3	chr10	15561288:15561411:15573048:15573150:15590453:15590567,	15573049	15573150	15573108	15573108	Nonsense_Mutation	C	A	p.E975*
ESCA	TCGA-LN-A4A1-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639256	17639256	Nonsense_Mutation	T	A	p.K633*
ESCA	TCGA-LN-A4A2-01	COG5	ENST00000393603.2,ENST00000297135.3	chr7	106888840:106888944:106897176:106897239:106898717:106898828,	106897177	106897239	106897227	106897227	Nonsense_Mutation	G	A	p.Q598*
ESCA	TCGA-LN-A4A3-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
ESCA	TCGA-LN-A4A3-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49191053:49191191:49194956:49195166:49195704:49195866,	49194957	49195166	49195059	49195059	Nonsense_Mutation	C	T	p.R199*
ESCA	TCGA-LN-A4A3-01	ZC2HC1A	ENST00000263849.4	chr8	79601456:79601608:79609641:79609741:79610648:79610748,	79609642	79609741	79609678	79609678	Nonsense_Mutation	G	T	p.G181*
ESCA	TCGA-LN-A4A5-01	CAPN6	ENST00000324068.1	chrX	110494776:110494970:110495534:110495727:110496235:110496444,	110495535	110495727	110495711	110495711	Nonsense_Mutation	C	A	p.E175*
ESCA	TCGA-LN-A4A6-01	NRP2	ENST00000412873.2,ENST00000540841.1,ENST00000540178.1,ENST00000272849.3,ENST00000357118.4,ENST00000357785.5,ENST00000360409.3	chr2	206617558:206617699:206628397:206628660:206630197:206630294,	206628398	206628660	206628610	206628610	Nonsense_Mutation	G	T	p.E753*
ESCA	TCGA-LN-A4A8-01	RPAP2	ENST00000477322.1,ENST00000610020.1	chr1	92811402:92811471:92846280:92846430:92852567:92852790,	92846281	92846430	92846387	92846387	Nonsense_Mutation	G	T	p.E599*
ESCA	TCGA-LN-A4A8-01	DENND6A	ENST00000311128.5	chr3	57616651:57616705:57618991:57619081:57620284:57620349,	57618992	57619081	57619036	57619036	Nonsense_Mutation	G	A	p.R437*
ESCA	TCGA-LN-A4A9-01	GRAMD4	ENST00000361034.3,ENST00000406902.1,ENST00000408031.1	chr22	47071364:47071449:47072496:47072565:47073043:47075580,	47072497	47072565	47072525	47072525	Nonsense_Mutation	C	G	p.S531*
ESCA	TCGA-LN-A4MQ-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717762	89717762	Nonsense_Mutation	A	T	p.K263*
ESCA	TCGA-LN-A4MQ-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5756346:5756397:5760663:5760803:5764954:5765069,	5760664	5760803	5760759	5760759	Nonsense_Mutation	G	A	p.R460*
ESCA	TCGA-LN-A4MR-01	DDAH2	ENST00000488119.1,ENST00000375792.3	chr6	31696422:31696522:31696641:31697002:31697827:31698004,	31696642	31697002	31696815	31696815	Nonsense_Mutation	G	A	p.Q42*
ESCA	TCGA-LN-A4MR-01	DDAH2	ENST00000375787.2	chr6	31696422:31696522:31696641:31696998:31697827:31698004,	31696642	31696998	31696815	31696815	Nonsense_Mutation	G	A	p.Q42*
ESCA	TCGA-LN-A4MR-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057845	145057845	Nonsense_Mutation	C	A	p.E638*
ESCA	TCGA-LN-A4MR-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057845	145057845	Nonsense_Mutation	C	A	p.E638*
ESCA	TCGA-LN-A4MR-01	SERINC3	ENST00000342374.4,ENST00000541235.1,ENST00000255175.1	chr20	43133441:43133532:43135467:43135637:43138531:43138669,	43135468	43135637	43135470	43135470	Nonsense_Mutation	G	A	p.Q261*
ESCA	TCGA-LN-A5U6-01	DGKI	ENST00000483619.1	chr7	137363352:137363398:137374639:137374748:137531207:137531282,137363352:137363398:137374639:137374748:137459340:137459395,	137374640	137374748	137374666	137374666	Nonsense_Mutation	C	A	p.E162*
ESCA	TCGA-LN-A7HY-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578179	7578179	Nonsense_Mutation	C	A	p.E224*
ESCA	TCGA-LN-A8HZ-01	ANKHD1	ENST00000360839.2,ENST00000297183.6,ENST00000421134.1	chr5	139866542:139866645:139876104:139876863:139884405:139884551,	139876105	139876863	139876620	139876620	Nonsense_Mutation	C	T	p.Q921*
ESCA	TCGA-LN-A8I1-01	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36251414:36251601:36253748:36253891:36255571:36255692,	36253749	36253891	36253802	36253802	Nonsense_Mutation	G	A	p.R372*
ESCA	TCGA-LN-A9FO-01	POMZP3	ENST00000275569.4,ENST00000310842.4	chr7	76247828:76247932:76254838:76255000:76255316:76255444,76247499:76247617:76254838:76255000:76255316:76255444,	76254839	76255000	76254993	76254993	Nonsense_Mutation	G	A	p.Q25*
ESCA	TCGA-LN-A9FO-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204*
ESCA	TCGA-LN-A9FP-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
ESCA	TCGA-LN-A9FP-01	CACHD1	ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65095046:65095164:65098281:65098426:65099726:65099943,	65098282	65098426	65098370	65098370	Nonsense_Mutation	C	T	p.Q245*
ESCA	TCGA-LN-A9FP-01	SLC4A8	ENST00000358657.3,ENST00000535225.2,ENST00000604314.1,ENST00000453097.2,ENST00000551071.1,ENST00000394856.1,ENST00000514353.3,ENST00000319957.6	chr12	51864175:51864309:51865070:51865316:51868125:51868231,	51865071	51865316	51865176	51865176	Nonsense_Mutation	C	G	p.Y588*
ESCA	TCGA-LN-A9FP-01	CELF3	ENST00000420342.1,ENST00000290583.4	chr1	151679144:151679210:151679620:151679770:151679982:151680124,	151679621	151679770	151679697	151679697	Nonsense_Mutation	G	C	p.Y282*
ESCA	TCGA-LN-A9FP-01	HYKK	ENST00000388988.4,ENST00000566332.1,ENST00000360519.3,ENST00000566289.1	chr15	78799958:78800013:78805425:78805767:78807309:78807449,	78805426	78805767	78805449	78805449	Nonsense_Mutation	C	T	p.Q7*
ESCA	TCGA-LN-A9FP-01	STOML3	ENST00000423210.1,ENST00000379631.4	chr13	39546648:39546731:39550676:39550749:39550830:39550934,	39550677	39550749	39550710	39550710	Nonsense_Mutation	C	A	p.G66*
ESCA	TCGA-LN-A9FP-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814241	214814241	Nonsense_Mutation	G	T	p.E854*
ESCA	TCGA-LN-A9FP-01	BTNL8	ENST00000231229.4,ENST00000503543.1	chr5	180374511:180374625:180375354:180375375:180375919:180375946,180374511:180374755:180375354:180375375:180375919:180375946,	180375355	180375375	180375368	180375368	Nonsense_Mutation	G	T	p.G311*
ESCA	TCGA-LN-A9FP-01	WDR62	ENST00000401500.2,ENST00000270301.7	chr19	36572334:36572472:36573964:36574143:36575554:36575646,	36573965	36574143	36573985	36573985	Nonsense_Mutation	C	G	p.Y464*
ESCA	TCGA-LN-A9FP-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228494959:228495232:228495811:228496084:228496799:228496996,	228495812	228496084	228495817	228495817	Nonsense_Mutation	G	T	p.E5115*
ESCA	TCGA-LN-A9FP-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766862	53766862	Nonsense_Mutation	G	T	p.E852*
ESCA	TCGA-LN-A9FP-01	PHACTR1	ENST00000457702.2,ENST00000415087.1,ENST00000332995.7,ENST00000379350.1	chr6	13206046:13206368:13228047:13228295:13230268:13230425,	13228048	13228295	13228205	13228205	Nonsense_Mutation	G	T	p.E382*
ESCA	TCGA-LN-A9FQ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
ESCA	TCGA-LN-A9FR-01	RICTOR	ENST00000511516.1,ENST00000357387.3,ENST00000296782.5	chr5	38942325:38942480:38942934:38943073:38944547:38944671,	38942935	38943073	38942960	38942960	Nonsense_Mutation	A	C	p.L1676*
ESCA	TCGA-Q9-A6FU-01	UROD	ENST00000491300.1,ENST00000434478.1,ENST00000486699.1,ENST00000246337.4,ENST00000478467.1,ENST00000462688.1,ENST00000469548.1	chr1	45479265:45479463:45479580:45479742:45480110:45480117,	45479581	45479742	45479618	45479618	Nonsense_Mutation	C	G	p.S171*
ESCA	TCGA-Q9-A6FW-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28*
ESCA	TCGA-Q9-A6FW-01	DYNC1LI2	ENST00000440564.2	chr16	66770099:66770147:66776340:66776571:66783099:66783216,66770099:66770147:66776340:66776571:66785175:66785206,	66776341	66776571	66776398	66776398	Nonsense_Mutation	C	A	p.E158*
ESCA	TCGA-Q9-A6FW-01	DYNC1LI2	ENST00000566150.1	chr16	66770099:66770147:66776340:66776457:66783099:66783216,	66776341	66776457	66776398	66776398	Nonsense_Mutation	C	A	p.E158*
ESCA	TCGA-Q9-A6FW-01	MTO1	ENST00000524046.1	chr6	74190040:74190090:74190397:74190528:74192171:74192257,	74190398	74190528	74190469	74190469	Nonsense_Mutation	C	T	p.R401*
ESCA	TCGA-Q9-A6FW-01	STAU2	ENST00000521727.1,ENST00000521210.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000518767.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521451.1,ENST00000523558.1	chr8	74507400:74507532:74515960:74516098:74525978:74526191,	74515961	74516098	74515978	74515978	Nonsense_Mutation	G	A	p.R306*
ESCA	TCGA-Q9-A6FW-01	FGGY	ENST00000430447.1	chr1	60132954:60133075:60139710:60139805:60146350:60146667,60132954:60133075:60139710:60139805:60223602:60223664,60132954:60133075:60139710:60139805:60163319:60163412,	60139711	60139805	60139734	60139734	Nonsense_Mutation	G	T	p.E505*
ESCA	TCGA-R6-A6DN-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925917	48925917	Nonsense_Mutation	G	A	p.Q235*
ESCA	TCGA-R6-A6DN-01	JDP2	ENST00000437176.1,ENST00000559060.1	chr14	75898836:75899039:75904600:75904824:75928128:75928233,75894919:75894955:75904600:75904824:75928128:75928233,	75904601	75904824	75904636	75904636	Nonsense_Mutation	C	T	p.Q5*
ESCA	TCGA-R6-A6DQ-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576873	7576873	Nonsense_Mutation	C	A	p.G325*
ESCA	TCGA-R6-A6KZ-01	CRY1	ENST00000008527.5,ENST00000552790.1	chr12	107395541:107395726:107398883:107399026:107415861:107415970,	107398884	107399026	107399004	107399004	Nonsense_Mutation	G	T	p.S97*
ESCA	TCGA-R6-A6L4-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547693	165547693	Nonsense_Mutation	C	A	p.E377*
ESCA	TCGA-R6-A6L6-01	HAUS4	ENST00000342454.8,ENST00000555986.1,ENST00000490506.1,ENST00000541587.1,ENST00000206474.7,ENST00000555367.1,ENST00000555040.1	chr14	23416809:23416940:23417076:23417222:23419522:23419619,	23417077	23417222	23417124	23417124	Nonsense_Mutation	T	A	p.K221*
ESCA	TCGA-R6-A6Y0-01	MYO1B	ENST00000304164.4,ENST00000392318.3	chr2	192265107:192265194:192267357:192267444:192272840:192272915,192265474:192265561:192267357:192267444:192272840:192272915,	192267358	192267444	192267361	192267361	Nonsense_Mutation	C	T	p.R825*
ESCA	TCGA-R6-A6Y0-01	PCSK7	ENST00000527861.1,ENST00000320934.3,ENST00000527037.1	chr11	117077489:117077514:117077782:117077876:117078369:117078451,117077489:117077514:117077782:117077876:117078685:117078780,	117077783	117077876	117077812	117077812	Nonsense_Mutation	C	T	p.W617*
ESCA	TCGA-R6-A6Y2-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102391	168102391	Nonsense_Mutation	C	T	p.R1497*
ESCA	TCGA-R6-A6Y2-01	TLE3	ENST00000558201.1,ENST00000558379.1,ENST00000442299.2,ENST00000558939.1,ENST00000557919.1,ENST00000560525.1,ENST00000560589.1,ENST00000539550.1,ENST00000559191.1,ENST00000559048.1,ENST00000559929.1,ENST00000560939.1,ENST00000557907.1,ENST00000451782.2,ENST00000561453.1,ENST00000557997.1,ENST00000440567.3,ENST00000317509.8	chr15	70342435:70342543:70343729:70343806:70344712:70344863,	70343730	70343806	70343732	70343732	Nonsense_Mutation	G	A	p.Q737*
ESCA	TCGA-R6-A6Y2-01	SEMA3G	ENST00000231721.2,ENST00000475739.1	chr3	52476200:52476320:52476574:52476637:52476762:52476879,	52476575	52476637	52476595	52476595	Nonsense_Mutation	G	A	p.R107*
ESCA	TCGA-R6-A6Y2-01	ADCK1	ENST00000393639.4	chr14	78288777:78288861:78325418:78325622:78353433:78353553,78288777:78288861:78325418:78325622:78365442:78365601,	78325419	78325622	78325584	78325584	Nonsense_Mutation	G	T	p.E129*
ESCA	TCGA-R6-A6Y2-01	IRF6	ENST00000542854.1,ENST00000367021.3	chr1	209961696:209961989:209963011:209963130:209963839:209964232,	209963012	209963130	209963069	209963069	Nonsense_Mutation	G	T	p.C374*
ESCA	TCGA-R6-A8W5-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000605788.1,ENST00000461421.1,ENST00000476468.1,ENST00000488254.2,ENST00000464969.2	chr10	103918949:103919065:103919189:103919325:103919652:103919695,	103919190	103919325	103919295	103919295	Nonsense_Mutation	G	T	p.E287*
ESCA	TCGA-R6-A8W8-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579536	7579536	Nonsense_Mutation	C	A	p.E51*
ESCA	TCGA-R6-A8W8-01	HEATR4	ENST00000560393.1,ENST00000334988.2,ENST00000553558.1	chr14	73985726:73985867:73987555:73987743:73988975:73989928,	73987556	73987743	73987652	73987652	Nonsense_Mutation	G	A	p.Q325*
ESCA	TCGA-R6-A8W8-01	DIAPH2	ENST00000373054.4	chrX	95939710:95940189:95993584:95993761:96013152:96013257,	95993585	95993761	95993591	95993591	Nonsense_Mutation	C	T	p.R58*
ESCA	TCGA-R6-A8WC-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749083	33749083	Nonsense_Mutation	C	T	p.W322*
ESCA	TCGA-R6-A8WC-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75829065:75829189:75831017:75831157:75833045:75833120,	75831018	75831157	75831041	75831041	Nonsense_Mutation	C	A	p.E2355*
ESCA	TCGA-R6-A8WC-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91*
ESCA	TCGA-S8-A6BW-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32457055:32457416:32459368:32459512:32466287:32466439,	32459369	32459512	32459470	32459470	Nonsense_Mutation	G	A	p.Q749*
ESCA	TCGA-V5-A7RE-01	ARHGEF12	ENST00000529970.1,ENST00000525222.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120327826:120327959:120328429:120328465:120328788:120328943,	120328430	120328465	120328461	120328461	Nonsense_Mutation	C	T	p.R741*
ESCA	TCGA-V5-AASV-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13357530	13357530	Nonsense_Mutation	C	T	p.W17*
ESCA	TCGA-V5-AASV-01	PLVAP	ENST00000252590.4	chr19	17471580:17471641:17476094:17476807:17476907:17476960,	17476095	17476807	17476376	17476376	Nonsense_Mutation	C	A	p.E300*
ESCA	TCGA-V5-AASV-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248371	44248371	Nonsense_Mutation	A	T	p.L380*
ESCA	TCGA-V5-AASX-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186094735:186094926:186097209:186097423:186099097:186099232,	186097210	186097423	186097328	186097328	Nonsense_Mutation	C	A	p.S4270*
ESCA	TCGA-V5-AASX-01	RPL36	ENST00000577222.1,ENST00000579649.1,ENST00000394580.2,ENST00000347512.3	chr19	5690516:5690611:5691329:5691464:5691542:5691555,	5691330	5691464	5691411	5691411	Nonsense_Mutation	G	T	p.E59*
ESCA	TCGA-V5-AASX-01	LZTS2	ENST00000370223.3,ENST00000370220.1	chr10	102762555:102762703:102763263:102763923:102765214:102765472,	102763264	102763923	102763855	102763855	Nonsense_Mutation	C	T	p.R334*
ESCA	TCGA-V5-AASX-01	SYT16	ENST00000446982.2,ENST00000555409.1,ENST00000430451.2	chr14	62462593:62463260:62536320:62536533:62541852:62542109,	62536321	62536533	62536530	62536530	Nonsense_Mutation	G	T	p.E245*
ESCA	TCGA-VR-A8EP-01	ANGPT1	ENST00000520052.1,ENST00000517746.1,ENST00000297450.3,ENST00000520734.1	chr8	108276448:108276579:108296909:108297076:108306163:108306265,	108296910	108297076	108296965	108296965	Nonsense_Mutation	G	A	p.R184*
ESCA	TCGA-VR-A8EQ-01	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000329066.4,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3	chr2	1499778:1499969:1500366:1500537:1507719:1507851,	1500367	1500537	1500486	1500486	Nonsense_Mutation	C	T	p.Q779*
ESCA	TCGA-VR-A8ET-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28*
ESCA	TCGA-VR-A8ET-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966761	64966761	Nonsense_Mutation	C	T	p.R570*
ESCA	TCGA-VR-A8EU-01	ARMC10	ENST00000323735.6,ENST00000434153.1,ENST00000323716.3	chr7	102715614:102715858:102716223:102716328:102724128:102724277,	102716224	102716328	102716313	102716313	Nonsense_Mutation	A	T	p.K77*
ESCA	TCGA-VR-A8EW-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663830	103663830	Nonsense_Mutation	G	A	p.Q233*
ESCA	TCGA-VR-A8EX-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574000	7574000	Nonsense_Mutation	C	A	p.E343*
ESCA	TCGA-VR-A8EZ-01	PDE2A	ENST00000541998.1,ENST00000536308.1,ENST00000543575.1	chr11	72302392:72302400:72316181:72316270:72319705:72319795,	72316182	72316270	72316222	72316222	Nonsense_Mutation	C	A	p.E95*
ESCA	TCGA-VR-A8EZ-01	CCDC88A	ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55528341:55528413:55529007:55529208:55535944:55536159,	55529008	55529208	55529026	55529026	Nonsense_Mutation	G	A	p.Q1552*
ESCA	TCGA-VR-A8EZ-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646173	215646173	Nonsense_Mutation	G	T	p.S142*
ESCA	TCGA-VR-A8Q7-01	LIFR	ENST00000506003.1,ENST00000263409.4,ENST00000453190.2	chr5	38489179:38489347:38490291:38490393:38493707:38493887,	38490292	38490393	38490352	38490352	Nonsense_Mutation	C	A	p.G703*
ESCA	TCGA-VR-AA4G-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579406	Nonsense_Mutation	G	T	p.S94*
ESCA	TCGA-VR-AA7B-01	DDX19A	ENST00000443119.2,ENST00000569771.1,ENST00000566574.1,ENST00000569319.1,ENST00000575878.1,ENST00000417604.2,ENST00000302243.7	chr16	70400526:70400764:70404125:70404288:70405274:70405466,	70404126	70404288	70404231	70404231	Nonsense_Mutation	G	T	p.E376*
ESCA	TCGA-VR-AA7B-01	TCN2	ENST00000215838.3,ENST00000407817.3,ENST00000405742.3,ENST00000450638.1	chr22	31013316:31013482:31018954:31019070:31022446:31022992,	31018955	31019070	31019043	31019043	Nonsense_Mutation	C	T	p.R399*
ESCA	TCGA-VR-AA7B-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39833819:39833986:39835701:39835858:39838150:39838268,	39835702	39835858	39835766	39835766	Nonsense_Mutation	C	T	p.Q4335*
ESCA	TCGA-VR-AA7D-01	TUBGCP3	ENST00000375669.3,ENST00000261965.3	chr13	113200012:113200179:113201933:113202066:113202421:113202490,	113201934	113202066	113201973	113201973	Nonsense_Mutation	G	A	p.R377*
ESCA	TCGA-X8-AAAR-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
ESCA	TCGA-XP-A8T6-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
ESCA	TCGA-XP-A8T6-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42466909:42467093:42487512:42487685:42505466:42505531,	42487513	42487685	42487656	42487656	Nonsense_Mutation	A	T	p.C727*
ESCA	TCGA-XP-A8T8-01	ADCK2	ENST00000072869.4,ENST00000473512.1,ENST00000476491.1,ENST00000498423.1,ENST00000483369.1	chr7	140378954:140379083:140380841:140380937:140386789:140386953,	140380842	140380937	140380866	140380866	Nonsense_Mutation	C	T	p.Q412*
ESCA	TCGA-XP-A8T8-01	LRCH3	ENST00000438796.2	chr3	197602568:197602646:197607382:197607628:197610411:197610556,	197607383	197607628	197607434	197607434	Nonsense_Mutation	A	T	p.R754*
ESCA	TCGA-Z6-A8JD-01	SWAP70	ENST00000534562.1,ENST00000524817.1,ENST00000447399.2,ENST00000318950.6	chr11	9754075:9754257:9759759:9759867:9761727:9761889,	9759760	9759867	9759811	9759811	Nonsense_Mutation	C	T	p.Q378*
ESCA	TCGA-Z6-A8JD-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87680094:87680226:87683879:87684343:87685745:87685877,	87683880	87684343	87684273	87684273	Nonsense_Mutation	C	G	p.S1316*
ESCA	TCGA-Z6-A8JD-01	STK11	ENST00000585465.1	chr19	1223146:1223171:1223636:1226662:1227591:1227856,	1223637	1226662	1226530	1226530	Nonsense_Mutation	G	T	p.E396*
ESCA	TCGA-Z6-A8JD-01	STK11	ENST00000586243.1	chr19	1223146:1223171:1226457:1226662:1227591:1227856,	1226458	1226662	1226530	1226530	Nonsense_Mutation	G	T	p.E396*
ESCA	TCGA-Z6-A8JD-01	STK11	ENST00000326873.7	chr19	1223146:1223171:1226452:1226662:1227591:1227856,	1226453	1226662	1226530	1226530	Nonsense_Mutation	G	T	p.E396*
ESCA	TCGA-Z6-A8JE-01	RBBP7	ENST00000404022.1,ENST00000380087.2	chrX	16881079:16881223:16887198:16887343:16888160:16888467,	16887199	16887343	16887221	16887221	Nonsense_Mutation	G	A	p.Q47*
ESCA	TCGA-Z6-A8JE-01	RBBP7	ENST00000468092.1	chrX	16881079:16881223:16887198:16887377:16888160:16888467,	16887199	16887377	16887221	16887221	Nonsense_Mutation	G	A	p.Q47*
ESCA	TCGA-Z6-A8JE-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42357021	42357021	Nonsense_Mutation	C	G	p.S398*
ESCA	TCGA-Z6-A8JE-01	GALNT5	ENST00000259056.4	chr2	158152905:158153025:158156059:158156177:158157187:158157511,	158156060	158156177	158156146	158156146	Nonsense_Mutation	G	A	p.W695*
ESCA	TCGA-Z6-A8JE-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828297	72828297	Nonsense_Mutation	C	A	p.G2762*
ESCA	TCGA-Z6-AAPN-01	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41506169:41508164:41515056:41515506:41517087:41517280,	41515057	41515506	41515340	41515340	Nonsense_Mutation	G	A	p.Q325*
ESCA	TCGA-Z6-AAPN-01	HNRNPH1	ENST00000503105.1	chr5	179045239:179045324:179047892:179048036:179048242:179048336,179046315:179046408:179047892:179048036:179048242:179048336,179044817:179044912:179047892:179048036:179048242:179048336,	179047893	179048036	179047895	179047895	Nonsense_Mutation	G	C	p.S132*
ESCA	TCGA-Z6-AAPN-01	PLOD1	ENST00000429000.2,ENST00000376369.3,ENST00000485046.1,ENST00000196061.4	chr1	12010413:12010577:12012679:12012792:12014886:12014950,	12012680	12012792	12012751	12012751	Nonsense_Mutation	C	T	p.Q180*
ESCA	TCGA-Z6-AAPN-01	PDS5A	ENST00000303538.8	chr4	39881347:39881453:39891868:39891984:39900008:39900148,	39891869	39891984	39891930	39891930	Nonsense_Mutation	C	A	p.E609*
ESCA	TCGA-Z6-AAPN-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000447398.1,ENST00000449767.1,ENST00000443864.2	chr7	44646237:44646252:44663915:44664164:44684925:44685117,	44663916	44664164	44664045	44664045	Nonsense_Mutation	C	T	p.Q35*
ESCA	TCGA-Z6-AAPN-01	UBAP2	ENST00000539807.1,ENST00000379239.4,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33927024:33927078:33927794:33927990:33932559:33932626,	33927795	33927990	33927920	33927920	Nonsense_Mutation	G	C	p.S749*
ESCA	TCGA-Z6-AAPN-01	CRHR1	ENST00000339069.5,ENST00000577353.1,ENST00000352855.5,ENST00000293493.7,ENST00000398285.3,ENST00000314537.5,ENST00000347197.5	chr17	43907459:43907580:43907782:43907936:43908245:43908306,	43907783	43907936	43907863	43907863	Nonsense_Mutation	C	A	p.Y212*
ESCA	TCGA-ZR-A9CJ-01	UCP2	ENST00000310473.3,ENST00000544615.1	chr11	73685896:73686166:73686535:73686716:73687685:73687787,	73686536	73686716	73686625	73686625	Nonsense_Mutation	G	T	p.Y242*
ESCA	TCGA-ZR-A9CJ-01	ZNF800	ENST00000265827.3,ENST00000436992.1,ENST00000393312.1,ENST00000439506.1,ENST00000393313.1,ENST00000434602.1	chr7	127017329:127017383:127026113:127026209:127031550:127031669,	127026114	127026209	127026124	127026124	Nonsense_Mutation	G	T	p.C49*
ESCA	TCGA-ZR-A9CJ-01	LRP2	ENST00000263816.3	chr2	170022441:170022564:170025048:170025186:170026211:170026328,	170025049	170025186	170025142	170025142	Nonsense_Mutation	C	A	p.E3848*
ESCA	TCGA-L5-A8NV-01	ABCA1	ENST00000423487.2,ENST00000374736.3,ENST00000374733.1	chr9	107645319:107645438:107646707:107646849:107651382:107651476,	107646708	107646849	107646736	107646736	Nonsense_Mutation	C	A	p.G92*
ESCA	TCGA-L5-A8NJ-01	ABCB10	ENST00000344517.4	chr1	229657338:229657382:229661682:229661863:229662975:229663055,	229661683	229661863	229661843	229661843	Nonsense_Mutation	G	T	p.C582*
ESCA	TCGA-LN-A49O-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20766666:20766763:20767937:20768078:20778605:20778762,	20767938	20768078	20768053	20768053	Nonsense_Mutation	C	T	p.R503*
ESCA	TCGA-R6-A6L6-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16149948:16150152:16162012:16162159:16165498:16165586,	16162013	16162159	16162052	16162052	Nonsense_Mutation	G	T	p.E573*
ESCA	TCGA-VR-A8EY-01	ABHD2	ENST00000562073.1,ENST00000569411.1,ENST00000565973.1,ENST00000352732.5,ENST00000355100.3	chr15	89659734:89659752:89694907:89695083:89698597:89698621,	89694908	89695083	89695080	89695080	Nonsense_Mutation	G	T	p.G123*
ESCA	TCGA-VR-A8Q7-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109609609:109609719:109610079:109610161:109611936:109612035,	109610080	109610161	109610096	109610096	Nonsense_Mutation	G	A	p.W351*
ESCA	TCGA-IG-A5B8-01	ACD	ENST00000393919.4,ENST00000602320.1,ENST00000219251.8,ENST00000602945.1,ENST00000602850.1	chr16	67692830:67692982:67693131:67693166:67693277:67693322,	67693132	67693166	67693165	67693165	Nonsense_Mutation	C	A	p.E240*
ESCA	TCGA-L5-A8NR-01	ACSL5	ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000479936.1,ENST00000354655.4	chr10	114154675:114154860:114158658:114158767:114164268:114164333,	114158659	114158767	114158683	114158683	Nonsense_Mutation	C	T	p.Q117*
ESCA	TCGA-LN-A49U-01	ACSS2	ENST00000477932.1,ENST00000253382.5,ENST00000491533.1,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33508341:33508512:33508808:33508942:33509132:33509221,	33508809	33508942	33508850	33508850	Nonsense_Mutation	G	A	p.W408*
ESCA	TCGA-JY-A6FE-01	ADAM18	ENST00000379866.1,ENST00000265707.5	chr8	39502856:39502993:39505862:39506046:39521313:39521409,	39505863	39506046	39506020	39506020	Nonsense_Mutation	G	T	p.E402*
ESCA	TCGA-L5-A4OH-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1	chr3	64527513:64527646:64532433:64532628:64536567:64536738,	64532434	64532628	64532485	64532485	Nonsense_Mutation	G	T	p.Y1671*
ESCA	TCGA-2H-A9GH-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1	chr3	64587619:64587889:64589597:64589765:64589902:64590007,	64589598	64589765	64589620	64589620	Nonsense_Mutation	C	T	p.W1242*
ESCA	TCGA-R6-A6Y2-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2	chr2	100209656:100210751:100217896:100218083:100266087:100266128,	100217897	100218083	100217961	100217961	Nonsense_Mutation	G	T	p.S461*
ESCA	TCGA-L5-A8NT-01	AHCYL2	ENST00000325006.3,ENST00000531335.2,ENST00000446544.2,ENST00000490911.1,ENST00000474594.1,ENST00000466924.1,ENST00000446212.1	chr7	129037062:129037165:129040130:129040225:129043219:129043326,	129040131	129040225	129040214	129040214	Nonsense_Mutation	C	T	p.Q303*
ESCA	TCGA-L5-A4OH-01	AKAP10	ENST00000572341.1	chr17	19861756:19861884:19866152:19866279:19871726:19871774,	19866153	19866279	19866239	19866239	Nonsense_Mutation	G	T	p.C59*
ESCA	TCGA-L5-A4OH-01	AKAP10	ENST00000225737.6,ENST00000572155.1,ENST00000395536.3	chr17	19861756:19861884:19866152:19866335:19871726:19871774,	19866153	19866335	19866239	19866239	Nonsense_Mutation	G	T	p.C59*
ESCA	TCGA-L5-A4OH-01	AKAP10	ENST00000576896.1	chr17	19861756:19861884:19866152:19866304:19871726:19871774,	19866153	19866304	19866239	19866239	Nonsense_Mutation	G	T	p.C59*
ESCA	TCGA-2H-A9GM-01	AKAP11	ENST00000025301.2	chr13	42882589:42882745:42887182:42887266:42888029:42888076,	42887183	42887266	42887235	42887235	Nonsense_Mutation	G	T	p.E1776*
ESCA	TCGA-LN-A7HX-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672917	151672917	Nonsense_Mutation	G	T	p.E1131*
ESCA	TCGA-LN-A4A6-01	ALG5	ENST00000496689.1,ENST00000413537.2,ENST00000239891.3	chr13	37559785:37559877:37563620:37563713:37567740:37567809,	37563621	37563713	37563687	37563687	Nonsense_Mutation	A	T	p.Y127*
ESCA	TCGA-2H-A9GI-01	ALK	ENST00000389048.3	chr2	29419635:29419726:29420407:29420542:29430036:29430138,	29420408	29420542	29420535	29420535	Nonsense_Mutation	C	A	p.G1316*
ESCA	TCGA-VR-A8EP-01	ANGPT1	ENST00000520052.1,ENST00000517746.1,ENST00000297450.3,ENST00000520734.1	chr8	108276448:108276579:108296909:108297076:108306163:108306265,	108296910	108297076	108296965	108296965	Nonsense_Mutation	G	A	p.R384*
ESCA	TCGA-L5-A88V-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278181	114278181	Nonsense_Mutation	G	T	p.E2803*
ESCA	TCGA-JY-A6F8-01	ANKLE2	ENST00000538766.1,ENST00000539605.1,ENST00000357997.5	chr12	133304617:133304749:133306264:133306856:133310970:133311046,	133306265	133306856	133306803	133306803	Nonsense_Mutation	C	A	p.E649*
ESCA	TCGA-IG-A8O2-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97830019:97830048:97830133:97830206:97833313:97833342,	97830134	97830206	97830162	97830162	Nonsense_Mutation	C	G	p.S496*
ESCA	TCGA-IG-A8O2-01	ANKRD36C	ENST00000456556.1	chr2	96601363:96601392:96604576:96604649:96604734:96604763,	96604577	96604649	96604621	96604621	Nonsense_Mutation	G	C	p.S530*
ESCA	TCGA-L5-A4OI-01	ARAP2	ENST00000303965.4,ENST00000512804.1	chr4	36152521:36152666:36160351:36160486:36160952:36161127,	36160352	36160486	36160352	36160352	Nonsense_Mutation	C	A	p.E918*
ESCA	TCGA-LN-A8I1-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561313	32561313	Nonsense_Mutation	C	T	p.R480*
ESCA	TCGA-LN-A49N-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561316	32561316	Nonsense_Mutation	G	T	p.E481*
ESCA	TCGA-VR-A8Q7-01	ARHGAP6	ENST00000495242.1,ENST00000380732.3,ENST00000534860.1,ENST00000303025.6,ENST00000380736.1,ENST00000413512.3,ENST00000337414.4,ENST00000380717.3,ENST00000380718.1,ENST00000489330.2	chrX	11204355:11204551:11206847:11207104:11215044:11215116,	11206848	11207104	11206970	11206970	Nonsense_Mutation	C	A	p.G319*
ESCA	TCGA-V5-A7RE-01	ARHGEF12	ENST00000529970.1,ENST00000525222.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120327826:120327959:120328429:120328465:120328788:120328943,	120328430	120328465	120328461	120328461	Nonsense_Mutation	C	T	p.R722*
ESCA	TCGA-L5-A4OI-01	ARSD	ENST00000381154.1	chrX	2827857:2828020:2828699:2828834:2833596:2833733,	2828700	2828834	2828792	2828792	Nonsense_Mutation	G	T	p.S348*
ESCA	TCGA-LN-A7HX-01	ARV1	ENST00000435927.1,ENST00000310256.2,ENST00000450711.1	chr1	231114891:231115025:231124065:231124185:231125855:231126009,	231124066	231124185	231124099	231124099	Nonsense_Mutation	G	T	p.E70*
ESCA	TCGA-JY-A6FH-01	ATG13	ENST00000529655.1,ENST00000525009.1,ENST00000359513.4,ENST00000526508.1,ENST00000434074.1,ENST00000524625.1,ENST00000451945.1,ENST00000312040.4,ENST00000530500.1,ENST00000528494.1	chr11	46690048:46690126:46690343:46690460:46690953:46690991,	46690344	46690460	46690365	46690365	Nonsense_Mutation	G	T	p.E418*
ESCA	TCGA-L5-A893-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108099904:108100050:108106396:108106561:108114679:108114811,	108106397	108106561	108106561	108106561	Nonsense_Mutation	G	T	p.E166*
ESCA	TCGA-KH-A6WC-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000532765.1,ENST00000278616.4,ENST00000533690.1	chr11	108186549:108186638:108186737:108186840:108188099:108188194,	108186738	108186840	108186796	108186796	Nonsense_Mutation	G	T	p.E2052*
ESCA	TCGA-L5-A8NU-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25276072:25276209:25280450:25280601:25281160:25281329,	25280451	25280601	25280563	25280563	Nonsense_Mutation	C	T	p.Q717*
ESCA	TCGA-V5-A7RE-01	ATP13A5	ENST00000342358.4	chr3	193036779:193036897:193039469:193039626:193040279:193040363,	193039470	193039626	193039503	193039503	Nonsense_Mutation	C	A	p.E628*
ESCA	TCGA-VR-AA7B-01	ATP1A1	ENST00000488733.1,ENST00000295598.5	chr1	116915890:116916145:116926635:116926746:116927404:116927464,	116926636	116926746	116926723	116926723	Nonsense_Mutation	G	T	p.E34*
ESCA	TCGA-IC-A6RF-01	ATP2C2	ENST00000416219.2,ENST00000420010.2,ENST00000262429.4,ENST00000565631.1	chr16	84482138:84482295:84485526:84485697:84486743:84486841,	84485527	84485697	84485637	84485637	Nonsense_Mutation	G	T	p.E591*
ESCA	TCGA-LN-A4A3-01	ATRNL1	ENST00000355044.3	chr10	117061482:117061553:117075027:117075246:117093791:117093929,	117075028	117075246	117075177	117075177	Nonsense_Mutation	G	T	p.E990*
ESCA	TCGA-2H-A9GG-01A-11D-A37C-09	ATXN2L	ENST00000325215.6,ENST00000565845.1,ENST00000564304.1,ENST00000382686.4,ENST00000395547.2,ENST00000565971.1,ENST00000336783.4,ENST00000340394.8,ENST00000563314.1,ENST00000570200.1	chr16	28844516:28844675:28844759:28844829:28845385:28845532,	28844760	28844829	28844774	28844774	Nonsense_Mutation	C	G	p.S657*
ESCA	TCGA-LN-A49Y-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951371	102951371	Nonsense_Mutation	C	T	p.R617*
ESCA	TCGA-L5-A43C-01	BBS1	ENST00000526760.1,ENST00000393994.2,ENST00000526035.1,ENST00000534730.1,ENST00000529953.1,ENST00000527251.1,ENST00000318312.7,ENST00000533430.1,ENST00000529766.1	chr11	66281876:66282149:66283010:66283057:66283163:66283202,	66283011	66283057	66283014	66283014	Nonsense_Mutation	C	T	p.R183*
ESCA	TCGA-JY-A93F-01	BCL7A	ENST00000432926.2,ENST00000261822.4	chr12	122459883:122460089:122468605:122468687:122473236:122473333,	122468606	122468687	122468610	122468610	Nonsense_Mutation	A	T	p.K33*
ESCA	TCGA-L5-A8NS-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70779668:70779723:70782310:70782454:70785230:70785509,	70782311	70782454	70782418	70782418	Nonsense_Mutation	G	T	p.E393*
ESCA	TCGA-XP-A8T7-01	BNIP3	ENST00000368636.4,ENST00000540159.1	chr10	133784141:133784291:133784367:133784474:133786537:133786622,	133784368	133784474	133784444	133784444	Nonsense_Mutation	C	A	p.E105*
ESCA	TCGA-2H-A9GR-01	BTBD1	ENST00000379403.2	chr15	83686712:83686977:83687458:83687605:83689426:83689514,83686712:83686977:83687458:83687605:83698887:83699080,	83687459	83687605	83687549	83687549	Nonsense_Mutation	A	T	p.C400*
ESCA	TCGA-L5-A8NU-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000334746.5	chr14	93719992:93720136:93723540:93723701:93727947:93728023,	93723541	93723701	93723588	93723588	Nonsense_Mutation	G	A	p.R521*
ESCA	TCGA-L7-A6VZ-01	C11orf49	ENST00000527667.1	chr11	47008758:47008861:47073938:47074069:47159195:47159280,46958330:46958402:47073938:47074069:47159195:47159280,47013093:47013198:47073938:47074069:47159195:47159280,	47073939	47074069	47074049	47074049	Nonsense_Mutation	G	T	p.E53*
ESCA	TCGA-Q9-A6FU-01	C11orf74	ENST00000528092.1	chr11	36631630:36631789:36669565:36669705:36680568:36680612,36657600:36657667:36669565:36669705:36680568:36680612,36654833:36654988:36669565:36669705:36680568:36680612,	36669566	36669705	36669655	36669655	Nonsense_Mutation	G	T	p.E150*
ESCA	TCGA-LN-A7HX-01	C6	ENST00000337836.5,ENST00000263413.3	chr5	41195893:41196035:41199869:41200014:41201659:41201816,	41199870	41200014	41199895	41199895	Nonsense_Mutation	G	T	p.C140*
ESCA	TCGA-L5-A8NE-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000337989.7,ENST00000263119.5	chr22	24560367:24560531:24561497:24561594:24562606:24563281,	24561498	24561594	24561508	24561508	Nonsense_Mutation	C	T	p.R1641*
ESCA	TCGA-JY-A6FE-01	CACNA1A	ENST00000360228.5,ENST00000585802.1,ENST00000574822.1,ENST00000587525.1,ENST00000573710.2	chr19	13340895:13341023:13342523:13342674:13345734:13345850,	13342524	13342674	13342533	13342533	Nonsense_Mutation	G	T	p.C1797*
ESCA	TCGA-2H-A9GL-01	CADM1	ENST00000536727.1,ENST00000331581.6	chr11	115049363:115049495:115061607:115061661:115069125:115069158,	115061608	115061661	115061610	115061610	Nonsense_Mutation	G	C	p.S388*
ESCA	TCGA-JY-A6FE-01	CALCOCO2	ENST00000509784.1	chr17	46933462:46933549:46937675:46937811:46939637:46939666,46933940:46933978:46937675:46937811:46939637:46939666,	46937676	46937811	46937763	46937763	Nonsense_Mutation	G	T	p.G366*
ESCA	TCGA-LN-A8HZ-01	CAMTA1	ENST00000439411.2,ENST00000495233.1,ENST00000303635.7	chr1	7797314:7797630:7798018:7798542:7804894:7805082,	7798019	7798542	7798315	7798315	Nonsense_Mutation	G	T	p.G1319*
ESCA	TCGA-XP-A8T8-01	CASP1	ENST00000436863.3,ENST00000353247.5,ENST00000527979.1,ENST00000594519.1,ENST00000446369.1,ENST00000393136.4,ENST00000415981.2,ENST00000598974.1,ENST00000593315.1,ENST00000526568.1	chr11	104896247:104896327:104896952:104897083:104897568:104897678,	104896953	104897083	104897032	104897032	Nonsense_Mutation	C	A	p.E390*
ESCA	TCGA-JY-A93E-01	CASP12	ENST00000441710.1	chr11	104761100:104761250:104761924:104762131:104763057:104763230,	104761925	104762131	104762131	104762131	Nonsense_Mutation	C	A	p.E145*
ESCA	TCGA-JY-A93E-01	CASP12	ENST00000417998.1,ENST00000422698.2,ENST00000508062.1,ENST00000446862.1,ENST00000375726.2	chr11	104761100:104761250:104761896:104762131:104763057:104763230,	104761897	104762131	104762131	104762131	Nonsense_Mutation	C	A	p.E145*
ESCA	TCGA-JY-A93D-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105412337:105412432:105420937:105421303:105422831:105423017,	105420938	105421303	105421029	105421029	Nonsense_Mutation	G	T	p.S623*
ESCA	TCGA-L5-A8NH-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26246030	26246030	Nonsense_Mutation	G	T	p.E23*
ESCA	TCGA-L5-A8NH-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114606915	114606915	Nonsense_Mutation	C	A	p.E443*
ESCA	TCGA-2H-A9GO-01	CCDC159	ENST00000586451.1,ENST00000458408.1,ENST00000588592.1,ENST00000588790.1,ENST00000590054.1	chr19	11460793:11460875:11461483:11461679:11462581:11462616,	11461484	11461679	11461552	11461552	Nonsense_Mutation	C	T	p.Q99*
ESCA	TCGA-L5-A43J-01	CCDC38	ENST00000549876.1,ENST00000344280.3	chr12	96266139:96266238:96271988:96272124:96273421:96273449,	96271989	96272124	96271999	96271999	Nonsense_Mutation	G	T	p.S423*
ESCA	TCGA-2H-A9GJ-01	CCDC92	ENST00000545135.1,ENST00000539761.1,ENST00000545891.1,ENST00000535556.1,ENST00000238156.3,ENST00000539551.1	chr12	124422311:124422377:124427290:124427332:124427893:124428040,	124427291	124427332	124427302	124427302	Nonsense_Mutation	G	T	p.S71*
ESCA	TCGA-2H-A9GM-01	CCNE1	ENST00000357943.5,ENST00000444983.2,ENST00000262643.3	chr19	30303631:30303683:30303875:30303944:30308043:30308189,	30303876	30303944	30303882	30303882	Nonsense_Mutation	C	T	p.Q40*
ESCA	TCGA-IC-A6RF-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547487	19547487	Nonsense_Mutation	G	T	p.E166*
ESCA	TCGA-R6-A6XG-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7640368:7640683:7647676:7647997:7649408:7649729,	7647677	7647997	7647722	7647722	Nonsense_Mutation	C	A	p.G459*
ESCA	TCGA-LN-A4A6-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7639094:7639409:7639489:7639582:7639954:7640269,	7639490	7639582	7639546	7639546	Nonsense_Mutation	G	T	p.S696*
ESCA	TCGA-R6-A6KZ-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000336454.3	chr1	100905487:100905554:100908489:100908552:100920960:100921048,	100908490	100908552	100908535	100908535	Nonsense_Mutation	G	T	p.E168*
ESCA	TCGA-IG-A5B8-01	CDC27	ENST00000573550.1	chr17	45232120:45232152:45234278:45234349:45234595:45234633,	45234279	45234349	45234325	45234325	Nonsense_Mutation	G	A	p.R266*
ESCA	TCGA-IG-A5B8-01	CDC27	ENST00000570818.1,ENST00000066544.3,ENST00000526866.1,ENST00000527547.1,ENST00000533415.1,ENST00000525495.2,ENST00000446365.2,ENST00000531206.1	chr17	45232120:45232152:45234278:45234490:45234595:45234633,	45234279	45234490	45234325	45234325	Nonsense_Mutation	G	A	p.R266*
ESCA	TCGA-L5-A4OG-01	CDK19	ENST00000323817.3,ENST00000368911.3,ENST00000457688.1,ENST00000463016.1	chr6	110988636:110988777:110991633:110991744:111067328:111067404,	110991634	110991744	110991738	110991738	Nonsense_Mutation	G	A	p.R71*
ESCA	TCGA-L5-A4OI-01	CDKAL1	ENST00000378624.4,ENST00000274695.4,ENST00000378610.1	chr6	20846305:20846409:20955649:20955816:21000457:21000603,	20955650	20955816	20955679	20955679	Nonsense_Mutation	G	T	p.E258*
ESCA	TCGA-L5-A8NH-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814805	214814805	Nonsense_Mutation	A	T	p.K1042*
ESCA	TCGA-L5-A8NL-01	CENPI	ENST00000423383.1,ENST00000372927.1,ENST00000218507.5	chrX	100387380:100387445:100395654:100395749:100400052:100400188,	100395655	100395749	100395679	100395679	Nonsense_Mutation	G	T	p.E499*
ESCA	TCGA-L5-A8NG-01	CENPN	ENST00000428963.2	chr16	81056201:81056303:81058319:81058383:81060130:81060243,81053704:81053881:81058319:81058383:81060130:81060243,	81058320	81058383	81058368	81058368	Nonsense_Mutation	G	T	p.G228*
ESCA	TCGA-2H-A9GI-01	CES1	ENST00000563005.1	chr16	55857461:55857595:55860062:55860207:55866915:55867016,	55860063	55860207	55860155	55860155	Nonsense_Mutation	G	A	p.R105*
ESCA	TCGA-L5-A4OS-01	CFH	ENST00000466229.1,ENST00000367429.4,ENST00000470918.1	chr1	196706037:196706136:196706604:196706790:196709748:196709922,	196706605	196706790	196706673	196706673	Nonsense_Mutation	G	T	p.E889*
ESCA	TCGA-VR-A8EO-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904465	5904465	Nonsense_Mutation	G	T	p.E559*
ESCA	TCGA-R6-A6Y2-01	CLK4	ENST00000521621.1,ENST00000519583.1,ENST00000520878.1,ENST00000316308.4	chr5	178030844:178030935:178032303:178032383:178035376:178035459,	178032304	178032383	178032350	178032350	Nonsense_Mutation	C	A	p.E390*
ESCA	TCGA-VR-A8EX-01	CNOT8	ENST00000517568.1,ENST00000403027.2,ENST00000520472.1,ENST00000517876.1,ENST00000285896.6,ENST00000519211.1	chr5	154238211:154238328:154244751:154244945:154251289:154251341,154238211:154238328:154244751:154244945:154250220:154250264,154242771:154242955:154244751:154244945:154251289:154251341,154242771:154242955:154244751:154244945:154250220:154250264,	154244752	154244945	154244791	154244791	Nonsense_Mutation	G	T	p.E53*
ESCA	TCGA-KH-A6WC-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000434620.1	chr8	121240948:121241008:121243705:121243857:121256117:121256247,	121243706	121243857	121243717	121243717	Nonsense_Mutation	G	T	p.G737*
ESCA	TCGA-VR-A8EZ-01	COL18A1	ENST00000359759.4,ENST00000459895.1,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46913414:46913489:46914458:46914485:46914775:46914828,	46914459	46914485	46914474	46914474	Nonsense_Mutation	C	T	p.R1205*
ESCA	TCGA-L7-A6VZ-01	COL5A1	ENST00000371817.3	chr9	137619111:137619243:137620515:137620653:137622081:137622321,	137620516	137620653	137620555	137620555	Nonsense_Mutation	G	T	p.E276*
ESCA	TCGA-2H-A9GL-01	COPS6	ENST00000426712.1,ENST00000303904.3,ENST00000418625.1	chr7	99688059:99688110:99688214:99688277:99688524:99688572,	99688215	99688277	99688230	99688230	Nonsense_Mutation	G	T	p.E147*
ESCA	TCGA-V5-AASX-01	CPB1	ENST00000468341.1,ENST00000282957.4,ENST00000491148.1,ENST00000462345.1,ENST00000465718.1	chr3	148545788:148545864:148552284:148552409:148558472:148558498,	148552285	148552409	148552396	148552396	Nonsense_Mutation	G	T	p.E87*
ESCA	TCGA-Z6-AAPN-01	CRHR1	ENST00000339069.5,ENST00000577353.1,ENST00000352855.5,ENST00000293493.7,ENST00000398285.3,ENST00000314537.5,ENST00000347197.5	chr17	43907459:43907580:43907782:43907936:43908245:43908306,	43907783	43907936	43907863	43907863	Nonsense_Mutation	C	A	p.Y241*
ESCA	TCGA-VR-A8EX-01	CRIM1	ENST00000280527.2	chr2	36583613:36583766:36668400:36668643:36669757:36669878,36623756:36623930:36668400:36668643:36669757:36669878,	36668401	36668643	36668613	36668613	Nonsense_Mutation	G	T	p.E240*
ESCA	TCGA-L5-A4OI-01	CTDP1	ENST00000075430.7	chr18	77488906:77489069:77496354:77496521:77513651:77514501,77477809:77478016:77496354:77496521:77513651:77514501,	77496355	77496521	77496373	77496373	Nonsense_Mutation	G	T	p.E867*
ESCA	TCGA-LN-A49X-01	CTDP1	ENST00000075430.7	chr18	77488906:77489069:77496354:77496521:77513651:77514501,77477809:77478016:77496354:77496521:77513651:77514501,	77496355	77496521	77496418	77496418	Nonsense_Mutation	C	T	p.Q882*
ESCA	TCGA-L5-A8NR-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266205	41266205	Nonsense_Mutation	C	T	p.Q68*
ESCA	TCGA-R6-A8W5-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000465552.1,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41275644:41275788:41277214:41277334:41277839:41277990,	41277215	41277334	41277242	41277242	Nonsense_Mutation	G	T	p.E571*
ESCA	TCGA-L5-A88Z-01	CWF19L1	ENST00000370379.1	chr10	101992933:101993128:101995423:101995521:101996606:101996726,101992933:101993128:101995423:101995521:101997778:101997988,	101995424	101995521	101995434	101995434	Nonsense_Mutation	G	A	p.Q488*
ESCA	TCGA-LN-A4A8-01	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	49032841:49032977:49034582:49034732:49040052:49040197,	49034583	49034732	49034650	49034650	Nonsense_Mutation	G	T	p.E526*
ESCA	TCGA-LN-A7HV-01	CYP2F1	ENST00000331105.2,ENST00000531409.1,ENST00000532164.2	chr19	41622359:41622522:41626251:41626401:41627362:41627523,	41626252	41626401	41626275	41626275	Nonsense_Mutation	C	T	p.R120*
ESCA	TCGA-2H-A9GK-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33289323	33289323	Nonsense_Mutation	G	A	p.Q77*
ESCA	TCGA-S8-A6BW-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32457055:32457416:32459368:32459512:32466287:32466439,	32459369	32459512	32459470	32459470	Nonsense_Mutation	G	A	p.Q794*
ESCA	TCGA-JY-A6F8-01	DECR2	ENST00000397710.1,ENST00000439661.1	chr16	454955:455024:455512:455665:456345:456397,	455513	455665	455532	455532	Nonsense_Mutation	G	T	p.G57*
ESCA	TCGA-L5-A891-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380424.1,ENST00000380427.1	chr9	19352070:19352180:19352487:19352663:19356969:19357152,	19352488	19352663	19352542	19352542	Nonsense_Mutation	G	T	p.E1505*
ESCA	TCGA-VR-A8EQ-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000382111.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32275510:32275738:32289567:32289737:32293467:32293639,	32289568	32289737	32289687	32289687	Nonsense_Mutation	G	T	p.E1363*
ESCA	TCGA-L5-A8NW-01	DHX34	ENST00000328771.4	chr19	47858295:47858607:47861122:47861377:47863224:47863327,	47861123	47861377	47861291	47861291	Nonsense_Mutation	G	T	p.E396*
ESCA	TCGA-IG-A97I-01	DIS3L	ENST00000530537.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66607373:66607553:66610786:66610956:66612908:66613070,	66610787	66610956	66610849	66610849	Nonsense_Mutation	G	T	p.E353*
ESCA	TCGA-IG-A50L-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000445090.1,ENST00000390005.5,ENST00000273009.6,ENST00000424049.1	chr2	233103242:233103355:233113948:233114056:233127916:233128072,	233113949	233114056	233113982	233113982	Nonsense_Mutation	G	T	p.E451*
ESCA	TCGA-VR-A8EQ-01	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12945995:12946213:12947760:12947979:12948826:12948941,	12947761	12947979	12947789	12947789	Nonsense_Mutation	G	T	p.S1349*
ESCA	TCGA-LN-A49K-01	DLGAP3	ENST00000235180.4,ENST00000373347.1	chr1	35333136:35333228:35334205:35334690:35350578:35350664,	35334206	35334690	35334318	35334318	Nonsense_Mutation	G	T	p.C791*
ESCA	TCGA-VR-A8EX-01	DMRT1	ENST00000382276.3,ENST00000569227.1	chr9	893911:894195:916762:916907:967984:968515,	916763	916907	916804	916804	Nonsense_Mutation	C	A	p.Y288*
ESCA	TCGA-L5-A88T-01	DNAH3	ENST00000261383.3,ENST00000396036.1,ENST00000415178.1	chr16	21133265:21133445:21136495:21136691:21139007:21139133,	21136496	21136691	21136659	21136659	Nonsense_Mutation	G	T	p.S414*
ESCA	TCGA-LN-A4A3-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749416	196749416	Nonsense_Mutation	G	A	p.R1886*
ESCA	TCGA-L5-A8NT-01	DNAJC24	ENST00000465995.1	chr11	31429656:31429877:31436357:31436496:31447833:31447902,31392353:31392406:31436357:31436496:31447833:31447902,	31436358	31436496	31436406	31436406	Nonsense_Mutation	G	T	p.E54*
ESCA	TCGA-L5-A8NR-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56485366	56485366	Nonsense_Mutation	G	A	p.R1156*
ESCA	TCGA-L5-A891-01	DTNB	ENST00000472690.1	chr2	25803589:25803695:25851039:25851253:25861882:25861955,25830155:25830190:25851039:25851253:25861882:25861963,25818992:25819109:25851039:25851253:25861882:25861963,	25851040	25851253	25851215	25851215	Nonsense_Mutation	G	A	p.R63*
ESCA	TCGA-LN-A49P-01	EFCAB1	ENST00000433756.1,ENST00000523092.1	chr8	49642322:49642430:49643098:49643203:49647652:49647791,	49643099	49643203	49643126	49643126	Nonsense_Mutation	G	A	p.R98*
ESCA	TCGA-L5-A8NK-01	EFCAB14	ENST00000484461.1,ENST00000371933.3	chr1	47152455:47152542:47154024:47154216:47155258:47155308,	47154025	47154216	47154135	47154135	Nonsense_Mutation	C	A	p.E293*
ESCA	TCGA-L5-A4OJ-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176034	63176034	Nonsense_Mutation	G	T	p.E720*
ESCA	TCGA-XP-A8T8-01	EI24	ENST00000343678.4,ENST00000534430.1,ENST00000534546.1,ENST00000535422.1,ENST00000527628.1,ENST00000530985.1,ENST00000531350.1,ENST00000527675.1,ENST00000278903.6,ENST00000525737.1	chr11	125448028:125448153:125448844:125448964:125449988:125450094,	125448845	125448964	125448944	125448944	Nonsense_Mutation	C	T	p.Q181*
ESCA	TCGA-VR-A8EX-01	EIF6	ENST00000374436.3,ENST00000415116.1,ENST00000374450.3	chr20	33867876:33867921:33868456:33868632:33871978:33872043,	33868457	33868632	33868521	33868521	Nonsense_Mutation	G	A	p.Q142*
ESCA	TCGA-L5-A4OJ-01	EMID1	ENST00000404820.3	chr22	29639433:29639478:29651259:29651350:29654805:29655066,	29651260	29651350	29651284	29651284	Nonsense_Mutation	C	T	p.Q382*
ESCA	TCGA-L5-A88S-01	ERCC8	ENST00000543101.1,ENST00000426742.2,ENST00000381118.3,ENST00000462279.1,ENST00000265038.5	chr5	60170046:60170510:60183266:60183347:60186715:60186913,	60183267	60183347	60183321	60183321	Nonsense_Mutation	G	T	p.C356*
ESCA	TCGA-S8-A6BV-01	ETNK1	ENST00000266517.4,ENST00000538218.1	chr12	22813996:22814139:22824205:22824289:22826433:22826594,	22824206	22824289	22824229	22824229	Nonsense_Mutation	G	T	p.E331*
ESCA	TCGA-L5-A8NJ-01	EVI5	ENST00000468580.1,ENST00000543509.1,ENST00000491940.1,ENST00000370331.1,ENST00000540033.1	chr1	93089732:93089891:93091350:93091491:93101758:93101893,	93091351	93091491	93091470	93091470	Nonsense_Mutation	C	A	p.E512*
ESCA	TCGA-L5-A8NQ-01	EVL	ENST00000554031.1,ENST00000402714.2,ENST00000553694.1,ENST00000554045.1,ENST00000392920.3	chr14	100603914:100603981:100604076:100604139:100607516:100607566,	100604077	100604139	100604120	100604120	Nonsense_Mutation	C	T	p.Q359*
ESCA	TCGA-KH-A6WC-01	EXOC5	ENST00000555148.1,ENST00000413566.2,ENST00000554598.1	chr14	57706312:57706377:57710882:57711077:57713428:57713545,	57710883	57711077	57710888	57710888	Nonsense_Mutation	C	A	p.E154*
ESCA	TCGA-L5-A8NE-01	FAM117A	ENST00000513602.1	chr17	47799868:47799956:47809912:47810082:47824542:47824625,47799868:47799956:47809912:47810082:47865858:47865937,	47809913	47810082	47810056	47810056	Nonsense_Mutation	C	A	p.E75*
ESCA	TCGA-VR-A8EO-01	FAM151B	ENST00000511718.1,ENST00000282226.4	chr5	79815511:79815729:79817821:79817957:79837491:79837861,	79817822	79817957	79817926	79817926	Nonsense_Mutation	C	T	p.Q214*
ESCA	TCGA-LN-A7HX-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345270	119345270	Nonsense_Mutation	C	A	p.E290*
ESCA	TCGA-JY-A93E-01	FAM98C	ENST00000586372.1,ENST00000588348.1,ENST00000252530.5	chr19	38895547:38895753:38895983:38896061:38896158:38896275,	38895984	38896061	38895990	38895990	Nonsense_Mutation	G	T	p.E188*
ESCA	TCGA-JY-A6FA-01	FBXO11	ENST00000434234.1	chr2	48016460:48016579:48035132:48035386:48035467:48035566,	48035133	48035386	48035283	48035283	Nonsense_Mutation	C	A	p.E920*
ESCA	TCGA-VR-A8ET-01	FBXO16	ENST00000380254.2,ENST00000518734.1,ENST00000346498.2,ENST00000521548.1	chr8	28304687:28304790:28309760:28309993:28314282:28314323,	28309761	28309993	28309933	28309933	Nonsense_Mutation	C	A	p.E190*
ESCA	TCGA-L5-A8NR-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000530013.1,ENST00000529137.1,ENST00000448981.2	chr11	33790396:33790560:33792286:33792376:33795939:33796050,	33792287	33792376	33792357	33792357	Nonsense_Mutation	T	A	p.R42*
ESCA	TCGA-L5-A8NR-01	FBXO3	ENST00000530401.1	chr11	33790396:33790560:33792286:33792361:33795939:33796064,	33792287	33792361	33792357	33792357	Nonsense_Mutation	T	A	p.R42*
ESCA	TCGA-Q9-A6FW-01	FGGY	ENST00000430447.1	chr1	60132954:60133075:60139710:60139805:60146350:60146667,60132954:60133075:60139710:60139805:60223602:60223664,60132954:60133075:60139710:60139805:60163319:60163412,	60139711	60139805	60139734	60139734	Nonsense_Mutation	G	T	p.E481*
ESCA	TCGA-X8-AAAR-01	FHOD3	ENST00000592128.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34298519:34298678:34310608:34310767:34320618:34320801,	34310609	34310767	34310636	34310636	Nonsense_Mutation	G	T	p.E974*
ESCA	TCGA-L5-A43J-01	FLOT2	ENST00000580805.1,ENST00000580313.1	chr17	27210194:27210249:27211242:27211333:27212629:27212703,27210194:27210249:27211242:27211333:27215962:27216044,27210194:27210249:27211242:27211333:27212874:27212965,	27211243	27211333	27211323	27211323	Nonsense_Mutation	C	A	p.E48*
ESCA	TCGA-L5-A43H-01	FMO1	ENST00000402921.2,ENST00000367750.3,ENST00000354841.4	chr1	171251396:171251472:171252282:171252355:171254340:171254660,	171252283	171252355	171252321	171252321	Nonsense_Mutation	G	T	p.E408*
ESCA	TCGA-JY-A939-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000507711.1	chr4	48625142:48625196:48636307:48636507:48686689:48686812,	48636308	48636507	48636316	48636316	Nonsense_Mutation	C	A	p.E38*
ESCA	TCGA-JY-A93C-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186664503	186664503	Nonsense_Mutation	C	G	p.Y3579*
ESCA	TCGA-L5-A8NV-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186666039	186666039	Nonsense_Mutation	G	A	p.W4091*
ESCA	TCGA-L7-A6VZ-01	FTO	ENST00000471389.1	chr16	53844051:53844129:53859775:53860403:53878066:53878210,	53859776	53860403	53860211	53860211	Nonsense_Mutation	G	T	p.G187*
ESCA	TCGA-R6-A6DN-01	FUS	ENST00000566605.1	chr16	31196400:31196500:31199645:31199678:31200443:31200547,	31199646	31199678	31199660	31199660	Nonsense_Mutation	G	T	p.G272*
ESCA	TCGA-L5-A43J-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074772	31074772	Nonsense_Mutation	A	T	p.K358*
ESCA	TCGA-JY-A93F-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087535	109087535	Nonsense_Mutation	G	T	p.E584*
ESCA	TCGA-L5-A891-01	GLB1L3	ENST00000431683.2,ENST00000410100.2	chr11	134182709:134182781:134183289:134183368:134183834:134183922,	134183290	134183368	134183296	134183296	Nonsense_Mutation	C	T	p.R503*
ESCA	TCGA-IG-A4QS-01	GOLGB1	ENST00000393667.3,ENST00000482512.1,ENST00000491690.1,ENST00000340645.5	chr3	121383376:121383461:121383772:121383878:121386322:121386457,	121383773	121383878	121383820	121383820	Nonsense_Mutation	G	A	p.Q3200*
ESCA	TCGA-JY-A939-01	GPD2	ENST00000540309.1,ENST00000492005.1,ENST00000409674.1,ENST00000438166.2,ENST00000310454.6,ENST00000464846.1,ENST00000409125.4,ENST00000409861.1	chr2	157435597:157435676:157436201:157436300:157439304:157439426,	157436202	157436300	157436298	157436298	Nonsense_Mutation	C	T	p.Q686*
ESCA	TCGA-KH-A6WC-01	GPSM2	ENST00000264126.3,ENST00000441735.1,ENST00000406462.2	chr1	109461234:109461411:109465038:109465198:109466621:109466836,	109465039	109465198	109465146	109465146	Nonsense_Mutation	C	A	p.C516*
ESCA	TCGA-JY-A93D-01	GRAP2	ENST00000544756.1	chr22	40351822:40351914:40356058:40356178:40361993:40362113,40343096:40343188:40356058:40356178:40361993:40362113,	40356059	40356178	40356069	40356069	Nonsense_Mutation	G	T	p.E61*
ESCA	TCGA-IG-A97H-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11758413:11759045:11761030:11761133:11765279:11765438,	11761031	11761133	11761097	11761097	Nonsense_Mutation	G	T	p.E1371*
ESCA	TCGA-Z6-A8JE-01	GRK5	ENST00000369108.3,ENST00000392870.2	chr10	121156206:121156284:121182677:121182778:121184504:121184597,	121182678	121182778	121182726	121182726	Nonsense_Mutation	G	T	p.E130*
ESCA	TCGA-JY-A93E-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468292	86468292	Nonsense_Mutation	G	T	p.E488*
ESCA	TCGA-V5-A7RC-01	HDAC1	ENST00000481281.1,ENST00000428704.1,ENST00000463172.1	chr1	32757761:32757819:32768221:32768334:32782265:32782383,	32768222	32768334	32768245	32768245	Nonsense_Mutation	G	T	p.G25*
ESCA	TCGA-2H-A9GJ-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2	chr12	112684704:112684880:112685265:112685354:112685870:112685975,	112685266	112685354	112685315	112685315	Nonsense_Mutation	C	A	p.E1258*
ESCA	TCGA-LN-A4A2-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125243	12125243	Nonsense_Mutation	G	T	p.E1739*
ESCA	TCGA-L5-A8NJ-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000376237.4,ENST00000487245.1	chr6	31237742:31237862:31237986:31238262:31238849:31239108,	31237987	31238262	31238056	31238056	Nonsense_Mutation	C	A	p.G276*
ESCA	TCGA-L5-A8NJ-01	HLA-DQB2	ENST00000427449.1	chr6	32724164:32724243:32726626:32726908:32729436:32729703,	32726627	32726908	32726627	32726627	Nonsense_Mutation	G	A	p.R216*
ESCA	TCGA-R6-A6DQ-01	HNRNPK	ENST00000360384.5,ENST00000376264.2,ENST00000376281.4,ENST00000351839.3,ENST00000457156.1,ENST00000376263.3	chr9	86586796:86587104:86587758:86587887:86588200:86588314,	86587759	86587887	86587852	86587852	Nonsense_Mutation	G	T	p.C184*
ESCA	TCGA-IG-A97H-01	HNRNPM	ENST00000600092.1,ENST00000600806.1	chr19	8533699:8533718:8536209:8536311:8538547:8538592,8533699:8533718:8536209:8536311:8539050:8539128,	8536210	8536311	8536251	8536251	Nonsense_Mutation	C	T	p.Q313*
ESCA	TCGA-2H-A9GN-01	HPS3	ENST00000460120.1,ENST00000296051.2	chr3	148876452:148876633:148877832:148878066:148879934:148880120,	148877833	148878066	148877872	148877872	Nonsense_Mutation	G	T	p.E638*
ESCA	TCGA-2H-A9GK-01	IDH3A	ENST00000558554.1,ENST00000559803.1,ENST00000559889.1,ENST00000299518.2,ENST00000560667.1,ENST00000441490.2,ENST00000558535.1	chr15	78457333:78457418:78458491:78458644:78461263:78461308,	78458492	78458644	78458517	78458517	Nonsense_Mutation	C	T	p.Q31*
ESCA	TCGA-2H-A9GH-01	IL17RC	ENST00000494365.1	chr3	9971535:9971581:9971711:9971833:9972083:9972128,9971535:9971581:9971711:9971833:9972578:9972627,	9971712	9971833	9971729	9971729	Nonsense_Mutation	A	T	p.K463*
ESCA	TCGA-VR-A8ER-01	IL1R2	ENST00000457817.1,ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102626183:102626288:102632332:102632513:102636099:102636274,	102632333	102632513	102632364	102632364	Nonsense_Mutation	G	T	p.E122*
ESCA	TCGA-L7-A6VZ-01	IL22RA2	ENST00000349184.4,ENST00000296980.2	chr6	137464967:137466910:137468858:137469028:137476077:137476256,	137468859	137469028	137468892	137468892	Nonsense_Mutation	G	T	p.Y203*
ESCA	TCGA-L5-A8NM-01	IL6	ENST00000406575.1,ENST00000404625.1,ENST00000426291.1,ENST00000258743.5	chr7	22766858:22766900:22767062:22767253:22768311:22768425,	22767063	22767253	22767197	22767197	Nonsense_Mutation	C	T	p.R106*
ESCA	TCGA-L5-A8NM-01	IL6	ENST00000401630.3	chr7	22766858:22766900:22767131:22767253:22768311:22768425,	22767132	22767253	22767197	22767197	Nonsense_Mutation	C	T	p.R106*
ESCA	TCGA-JY-A6FB-01	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873732	35873732	Nonsense_Mutation	G	T	p.E230*
ESCA	TCGA-JY-A6FD-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7170547:7170762:7172300:7172445:7174593:7174742,	7172301	7172445	7172394	7172394	Nonsense_Mutation	G	T	p.S392*
ESCA	TCGA-L5-A4OJ-01	INTS6	ENST00000420668.2	chr13	51961555:51961676:51963454:51963580:51969435:51969619,51961555:51961676:51963454:51963580:52004429:52004519,	51963455	51963580	51963521	51963521	Nonsense_Mutation	G	T	p.C163*
ESCA	TCGA-L5-A88T-01	IRF1	ENST00000405885.2,ENST00000245414.4	chr5	131821358:131821408:131821942:131822065:131822248:131822331,	131821943	131822065	131821980	131821980	Nonsense_Mutation	G	T	p.Y210*
ESCA	TCGA-Q9-A6FU-01	ITCH	ENST00000483727.1,ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33045194:33045279:33049897:33050026:33057852:33057925,	33049898	33050026	33049899	33049899	Nonsense_Mutation	C	T	p.Q474*
ESCA	TCGA-JY-A93C-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226923581	226923581	Nonsense_Mutation	G	A	p.Q527*
ESCA	TCGA-R6-A6DN-01	JDP2	ENST00000437176.1,ENST00000559060.1	chr14	75898836:75899039:75904600:75904824:75928128:75928233,75894919:75894955:75904600:75904824:75928128:75928233,	75904601	75904824	75904636	75904636	Nonsense_Mutation	C	T	p.Q16*
ESCA	TCGA-IG-A6QS-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	711982	711982	Nonsense_Mutation	G	T	p.E406*
ESCA	TCGA-L5-A893-01	KANK1	ENST00000382303.1,ENST00000382293.3,ENST00000382297.2,ENST00000489369.1	chr9	711172:713464:730050:730248:731157:731266,	730051	730248	730134	730134	Nonsense_Mutation	G	T	p.E928*
ESCA	TCGA-JY-A6FE-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603427	138603427	Nonsense_Mutation	C	T	p.W315*
ESCA	TCGA-VR-A8EW-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663830	103663830	Nonsense_Mutation	G	A	p.Q244*
ESCA	TCGA-XP-A8T6-01	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170591806	170591806	Nonsense_Mutation	T	A	p.Y94*
ESCA	TCGA-L5-A8NM-01	KMT2B	ENST00000222270.7,ENST00000420124.1	chr19	36224663:36224773:36227590:36227728:36227812:36227887,	36227591	36227728	36227710	36227710	Nonsense_Mutation	G	T	p.E2427*
ESCA	TCGA-VR-A8Q7-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151960100:151960215:151962122:151962294:151970789:151970952,	151962123	151962294	151962134	151962134	Nonsense_Mutation	G	T	p.C391*
ESCA	TCGA-L5-A8NM-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6080879:6080950:6093353:6093527:6138192:6138295,	6093354	6093527	6093420	6093420	Nonsense_Mutation	G	T	p.S436*
ESCA	TCGA-IG-A3YB-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000265537.3	chr3	45488382:45488472:45500234:45500378:45515734:45515842,	45500235	45500378	45500280	45500280	Nonsense_Mutation	G	T	p.E218*
ESCA	TCGA-L5-A893-01	LEKR1	ENST00000483177.1	chr3	156547074:156547166:156570556:156570771:156638363:156638483,156547074:156547166:156570556:156570771:156606085:156606258,	156570557	156570771	156570674	156570674	Nonsense_Mutation	G	T	p.G56*
ESCA	TCGA-RE-A7BO-01	LIMA1	ENST00000552720.1,ENST00000552909.1,ENST00000552783.1,ENST00000552823.1,ENST00000341247.4,ENST00000394943.3	chr12	50594559:50594667:50598334:50598483:50599766:50599851,	50598335	50598483	50598456	50598456	Nonsense_Mutation	G	T	p.S248*
ESCA	TCGA-L5-A8NH-01	LRCH1	ENST00000463929.1,ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47261986:47262114:47263267:47263331:47266670:47266712,	47263268	47263331	47263314	47263314	Nonsense_Mutation	C	T	p.R333*
ESCA	TCGA-VR-A8EW-01	LRRC37A2	ENST00000576629.1,ENST00000572638.1,ENST00000333412.3	chr17	44630765:44630815:44632517:44632572:44632650:44632790,	44632518	44632572	44632542	44632542	Nonsense_Mutation	G	A	p.W1628*
ESCA	TCGA-LN-A4A9-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449856	85449856	Nonsense_Mutation	G	T	p.E429*
ESCA	TCGA-VR-AA7B-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39833819:39833986:39835701:39835858:39838150:39838268,	39835702	39835858	39835766	39835766	Nonsense_Mutation	C	T	p.Q2273*
ESCA	TCGA-VR-A8EQ-01	MANBA	ENST00000226578.4,ENST00000505239.1,ENST00000514430.1	chr4	103571693:103571858:103578838:103579057:103585841:103586009,	103578839	103579057	103578863	103578863	Nonsense_Mutation	C	T	p.W560*
ESCA	TCGA-VR-A8EZ-01	MAP3K1	ENST00000399503.3	chr5	56161166:56161283:56161655:56161804:56167736:56167858,	56161656	56161804	56161771	56161771	Nonsense_Mutation	C	A	p.S423*
ESCA	TCGA-LN-A49P-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470625	161470625	Nonsense_Mutation	G	T	p.E441*
ESCA	TCGA-L5-A8NH-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470619	161470619	Nonsense_Mutation	G	T	p.E439*
ESCA	TCGA-IC-A6RE-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2,ENST00000549875.1	chr12	112318250:112318331:112321384:112321572:112323719:112323840,	112321385	112321572	112321523	112321523	Nonsense_Mutation	G	T	p.E267*
ESCA	TCGA-L5-A4OI-01	MBD5	ENST00000404807.1,ENST00000407073.1	chr2	149220150:149220253:149221307:149221488:149225909:149228030,	149221308	149221488	149221353	149221353	Nonsense_Mutation	G	T	p.E88*
ESCA	TCGA-IG-A97H-01	MCMDC2	ENST00000541540.1,ENST00000492775.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3,ENST00000415737.1	chr8	67791049:67791154:67793083:67793209:67795991:67796229,	67793084	67793209	67793086	67793086	Nonsense_Mutation	G	T	p.E238*
ESCA	TCGA-IG-A6QS-01	MCOLN2	ENST00000463065.1,ENST00000531325.1,ENST00000370608.3,ENST00000284027.5	chr1	85418128:85418213:85422113:85422267:85424211:85424385,	85422114	85422267	85422175	85422175	Nonsense_Mutation	G	T	p.Y168*
ESCA	TCGA-LN-A4A1-01	MIEN1	ENST00000469568.1,ENST00000394231.3	chr17	37885408:37885858:37885937:37886014:37886446:37886544,	37885938	37886014	37886006	37886006	Nonsense_Mutation	C	A	p.E66*
ESCA	TCGA-VR-A8EP-01	MIPEP	ENST00000382172.3	chr13	24380088:24380208:24383988:24384063:24410378:24410488,	24383989	24384063	24383997	24383997	Nonsense_Mutation	G	A	p.Q574*
ESCA	TCGA-IC-A6RF-01	MLH1	ENST00000447829.1	chr3	37058996:37059090:37061800:37061954:37067127:37067498,37055922:37056035:37061800:37061954:37067127:37067410,	37061801	37061954	37061853	37061853	Nonsense_Mutation	G	T	p.E313*
ESCA	TCGA-V5-A7RE-01	MMP19	ENST00000548629.1,ENST00000322569.4,ENST00000552872.1	chr12	56232389:56232518:56233279:56233525:56236136:56236222,56232389:56232518:56233279:56233525:56234450:56234597,	56233280	56233525	56233466	56233466	Nonsense_Mutation	C	A	p.E194*
ESCA	TCGA-L5-A4OQ-01	MOV10	ENST00000468624.1,ENST00000496577.1,ENST00000369645.1,ENST00000413052.2,ENST00000369644.1,ENST00000357443.2	chr1	113232615:113232720:113234286:113234421:113235382:113235551,	113234287	113234421	113234375	113234375	Nonsense_Mutation	C	T	p.Q309*
ESCA	TCGA-VR-A8EW-01	MRPL10	ENST00000290208.7,ENST00000414011.1,ENST00000421763.1,ENST00000351111.2	chr17	45900948:45901824:45904002:45904147:45904405:45904570,	45904003	45904147	45904115	45904115	Nonsense_Mutation	G	T	p.Y140*
ESCA	TCGA-L5-A4OI-01	MRPL15	ENST00000260102.4,ENST00000522521.1	chr8	55049827:55049993:55055222:55055346:55059941:55060104,	55055223	55055346	55055256	55055256	Nonsense_Mutation	G	T	p.E155*
ESCA	TCGA-R6-A8WC-01	MRPS5	ENST00000475895.1,ENST00000345084.5,ENST00000272418.2	chr2	95775660:95775786:95780810:95780948:95783609:95783690,	95780811	95780948	95780886	95780886	Nonsense_Mutation	G	A	p.Q68*
ESCA	TCGA-R6-A6Y2-01	MST1R	ENST00000296474.3,ENST00000344206.4	chr3	49929203:49929271:49932599:49932806:49932879:49932981,	49932600	49932806	49932735	49932735	Nonsense_Mutation	C	A	p.E1046*
ESCA	TCGA-XP-A8T8-01	MTMR3	ENST00000401950.2,ENST00000333027.3,ENST00000406629.1,ENST00000351488.3,ENST00000323630.5	chr22	30384468:30384551:30387492:30387659:30394749:30394846,	30387493	30387659	30387632	30387632	Nonsense_Mutation	G	T	p.E145*
ESCA	TCGA-JY-A938-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8959521:8959706:8961951:8962031:8962353:8962395,	8961952	8962031	8961961	8961961	Nonsense_Mutation	G	T	p.C14472*
ESCA	TCGA-L5-A8NJ-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15835616:15835748:15838985:15839094:15841426:15841587,	15838986	15839094	15839072	15839072	Nonsense_Mutation	G	A	p.Q819*
ESCA	TCGA-2H-A9GR-01	MYO18B	ENST00000536101.1,ENST00000418374.2,ENST00000335473.7,ENST00000539302.1,ENST00000407587.2	chr22	26388328:26388459:26399230:26399275:26400683:26400821,	26399231	26399275	26399252	26399252	Nonsense_Mutation	T	A	p.C2103*
ESCA	TCGA-L5-A8NS-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171260756:171260910:171262054:171262143:171264224:171264354,	171262055	171262143	171262126	171262126	Nonsense_Mutation	C	T	p.Q844*
ESCA	TCGA-2H-A9GK-01	MZF1	ENST00000599369.1,ENST00000594234.1,ENST00000215057.2,ENST00000594108.1	chr19	59080882:59080953:59081710:59081894:59082360:59082796,	59081711	59081894	59081731	59081731	Nonsense_Mutation	G	C	p.S187*
ESCA	TCGA-L5-A8NR-01	N4BP2	ENST00000513269.1,ENST00000261435.6,ENST00000511480.1	chr4	40121551:40123929:40124746:40124832:40125779:40125825,	40124747	40124832	40124821	40124821	Nonsense_Mutation	G	T	p.E1425*
ESCA	TCGA-LN-A49L-01	NAE1	ENST00000290810.3,ENST00000394074.2,ENST00000379463.2,ENST00000359087.4	chr16	66844599:66844675:66847466:66847600:66847689:66847749,	66847467	66847600	66847533	66847533	Nonsense_Mutation	A	C	p.L323*
ESCA	TCGA-JY-A939-01	NCDN	ENST00000373253.3,ENST00000356090.4,ENST00000373243.2	chr1	36025926:36026895:36027992:36028234:36028802:36029027,	36027993	36028234	36028217	36028217	Nonsense_Mutation	G	A	p.W456*
ESCA	TCGA-L5-A88S-01	NDUFAF3	ENST00000326925.6,ENST00000480392.1	chr3	49059553:49059654:49059778:49059971:49060134:49060201,	49059779	49059971	49059963	49059963	Nonsense_Mutation	C	T	p.Q88*
ESCA	TCGA-L5-A88Z-01	NDUFS2	ENST00000392179.4,ENST00000467295.1,ENST00000465923.1,ENST00000476409.2,ENST00000483804.1,ENST00000367993.3	chr1	161179900:161179978:161180093:161180179:161180380:161180486,	161180094	161180179	161180118	161180118	Nonsense_Mutation	C	T	p.R269*
ESCA	TCGA-LN-A49M-01	NDUFS8	ENST00000453471.2,ENST00000432321.2,ENST00000525628.1,ENST00000531228.1,ENST00000313468.5,ENST00000526339.1	chr11	67799752:67799803:67800389:67800479:67800577:67800690,	67800390	67800479	67800424	67800424	Nonsense_Mutation	G	T	p.E67*
ESCA	TCGA-IG-A4P3-01	NEK3	ENST00000551355.1	chr13	52728251:52728308:52730209:52730383:52733677:52733685,52728029:52728127:52730209:52730383:52733677:52733685,	52730210	52730383	52730333	52730333	Nonsense_Mutation	G	T	p.C19*
ESCA	TCGA-R6-A6L6-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057296	30057296	Nonsense_Mutation	G	T	p.E260*
ESCA	TCGA-X8-AAAR-01	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1	chr19	55501389:55501560:55501869:55502040:55505636:55505807,	55501870	55502040	55502000	55502000	Nonsense_Mutation	G	T	p.E890*
ESCA	TCGA-LN-A8HZ-01	NLRP4	ENST00000589437.1,ENST00000301295.6,ENST00000587891.1,ENST00000346986.5	chr19	56382192:56382363:56388361:56388532:56390159:56390330,	56388362	56388532	56388459	56388459	Nonsense_Mutation	G	T	p.E875*
ESCA	TCGA-R6-A6L6-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450533	55450533	Nonsense_Mutation	G	A	p.Q580*
ESCA	TCGA-L7-A6VZ-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30492190	30492190	Nonsense_Mutation	G	T	p.S236*
ESCA	TCGA-VR-AA4G-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044483	108044483	Nonsense_Mutation	G	A	p.Q410*
ESCA	TCGA-IG-A5B8-01	NPEPPS	ENST00000525021.1,ENST00000530514.1	chr17	45668082:45668247:45669269:45669426:45669850:45669911,	45669270	45669426	45669307	45669307	Nonsense_Mutation	C	G	p.S116*
ESCA	TCGA-L5-A4OJ-01	NPR1	ENST00000368680.3	chr1	153659491:153659563:153659675:153659832:153660109:153660265,	153659676	153659832	153659784	153659784	Nonsense_Mutation	G	T	p.E682*
ESCA	TCGA-JY-A6F8-01	NRP2	ENST00000467850.1,ENST00000357785.5	chr2	206631506:206631527:206656958:206657009:206659477:206659782,	206656959	206657009	206656994	206656994	Nonsense_Mutation	G	T	p.E826*
ESCA	TCGA-JY-A6FE-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96059585:96059756:96063853:96063922:96076482:96076590,	96063854	96063922	96063915	96063915	Nonsense_Mutation	G	T	p.C506*
ESCA	TCGA-L5-A4OT-01	NTRK1	ENST00000497019.2	chr1	156841414:156841547:156843424:156843751:156844362:156844418,156838296:156838439:156843424:156843751:156844362:156844418,	156843425	156843751	156843699	156843699	Nonsense_Mutation	G	A	p.W301*
ESCA	TCGA-L5-A4OH-01	NUB1	ENST00000413040.2,ENST00000355851.4,ENST00000566856.1,ENST00000568733.1	chr7	151064946:151065054:151065820:151065973:151071182:151071287,	151065821	151065973	151065971	151065971	Nonsense_Mutation	G	T	p.E440*
ESCA	TCGA-R6-A8WG-01	NUP93	ENST00000564887.1,ENST00000569863.1,ENST00000567641.1,ENST00000568656.1,ENST00000542526.1,ENST00000308159.5,ENST00000569842.1	chr16	56832387:56832450:56839415:56839544:56852575:56852621,	56839416	56839544	56839482	56839482	Nonsense_Mutation	C	T	p.R143*
ESCA	TCGA-LN-A9FP-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228494959:228495232:228495811:228496084:228496799:228496996,	228495812	228496084	228495817	228495817	Nonsense_Mutation	G	T	p.E4158*
ESCA	TCGA-VR-A8EQ-01	OGDH	ENST00000444676.1	chr7	44687042:44687133:44695916:44695961:44706334:44706450,44687255:44687358:44695916:44695961:44706334:44706450,	44695917	44695961	44695934	44695934	Nonsense_Mutation	G	T	p.E115*
ESCA	TCGA-V5-A7RC-01	OGT	ENST00000459760.1,ENST00000373719.3,ENST00000373701.3	chrX	70774408:70774442:70775039:70775235:70775803:70775944,	70775040	70775235	70775170	70775170	Nonsense_Mutation	G	T	p.E287*
ESCA	TCGA-L5-A8NV-01	ORC3	ENST00000546266.1	chr6	88311501:88311599:88313101:88313246:88315634:88315739,88304070:88304125:88313101:88313246:88315634:88315739,	88313102	88313246	88313147	88313147	Nonsense_Mutation	G	T	p.E75*
ESCA	TCGA-KH-A6WC-01	OSR2	ENST00000435298.2	chr8	99961066:99961836:99962883:99962983:99963828:99964328,	99962884	99962983	99962900	99962900	Nonsense_Mutation	G	T	p.E346*
ESCA	TCGA-JY-A6F8-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57270953	57270953	Nonsense_Mutation	G	A	p.R76*
ESCA	TCGA-JY-A6F8-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57270953	57270953	Nonsense_Mutation	G	A	p.R76*
ESCA	TCGA-JY-A6F8-01	PAIP1	ENST00000436644.2,ENST00000508537.1,ENST00000504639.1,ENST00000338972.4,ENST00000306846.3,ENST00000511321.1,ENST00000514514.1	chr5	43543162:43543218:43547829:43548015:43555931:43556063,	43547830	43548015	43547975	43547975	Nonsense_Mutation	G	T	p.S159*
ESCA	TCGA-JY-A939-01	PAPOLA	ENST00000392990.2,ENST00000557471.1,ENST00000554130.1,ENST00000216277.8,ENST00000557320.1,ENST00000553689.1	chr14	96968894:96968937:96986391:96986565:96987342:96987409,	96986392	96986565	96986549	96986549	Nonsense_Mutation	G	T	p.E56*
ESCA	TCGA-JY-A6FE-01	PARD3	ENST00000374789.3,ENST00000340077.5,ENST00000545693.1,ENST00000346874.4,ENST00000374788.3,ENST00000374790.3	chr10	34620044:34620272:34625126:34625171:34626205:34626354,34620044:34620272:34625126:34625171:34626292:34626354,34620044:34620272:34625126:34625171:34626202:34626354,	34625127	34625171	34625163	34625163	Nonsense_Mutation	C	A	p.E860*
ESCA	TCGA-VR-AA7I-01A-11D-A403-09	PARP12	ENST00000493262.1,ENST00000473341.1,ENST00000263549.3,ENST00000488726.1	chr7	139741443:139741639:139746683:139746807:139754461:139754522,	139746684	139746807	139746766	139746766	Nonsense_Mutation	G	A	p.Q302*
ESCA	TCGA-LN-A49L-01	PARPBP	ENST00000543784.1	chr12	102547646:102547754:102558215:102558386:102559506:102559661,102517765:102517819:102558215:102558386:102559506:102559661,	102558216	102558386	102558360	102558360	Nonsense_Mutation	C	T	p.R214*
ESCA	TCGA-2H-A9GG-01A-11D-A37C-09	PBXIP1	ENST00000368463.3,ENST00000368460.3,ENST00000490230.1	chr1	154923946:154924011:154924270:154924397:154926146:154926233,	154924271	154924397	154924334	154924334	Nonsense_Mutation	G	A	p.Q39*
ESCA	TCGA-2H-A9GG-01A-11D-A37C-09	PBXIP1	ENST00000493133.1	chr1	154923707:154923873:154923946:154924397:154926146:154926233,	154923947	154924397	154924334	154924334	Nonsense_Mutation	G	A	p.Q39*
ESCA	TCGA-LN-A7HX-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579102	82579102	Nonsense_Mutation	G	T	p.S3601*
ESCA	TCGA-IG-A4P3-01	PDCD6IP	ENST00000457054.2	chr3	33867971:33868072:33870329:33870461:33877535:33877664,	33870330	33870461	33870405	33870405	Nonsense_Mutation	C	T	p.Q265*
ESCA	TCGA-IG-A4P3-01	PDCD6IP	ENST00000307296.3	chr3	33867971:33868072:33870344:33870461:33877535:33877664,	33870345	33870461	33870405	33870405	Nonsense_Mutation	C	T	p.Q265*
ESCA	TCGA-ZR-A9CJ-01	PDK3	ENST00000441463.2	chrX	24549773:24549887:24552045:24552185:24557250:24557954,	24552046	24552185	24552067	24552067	Nonsense_Mutation	G	T	p.E367*
ESCA	TCGA-JY-A6FA-01	PDZK1IP1	ENST00000294338.2,ENST00000371885.1	chr1	47650673:47650769:47652990:47653099:47655537:47655603,	47652991	47653099	47653002	47653002	Nonsense_Mutation	G	T	p.C55*
ESCA	TCGA-VR-A8ER-01	PEX3	ENST00000367591.4	chr6	143795922:143795993:143800212:143800335:143806288:143806385,	143800213	143800335	143800301	143800301	Nonsense_Mutation	G	T	p.E303*
ESCA	TCGA-VR-A8EQ-01	PFKFB3	ENST00000540253.1,ENST00000379782.3,ENST00000379789.4,ENST00000360521.2,ENST00000477914.1,ENST00000461744.1,ENST00000490474.1,ENST00000467491.1,ENST00000379785.1,ENST00000379775.4,ENST00000317350.4,ENST00000536985.1	chr10	6257183:6257280:6258087:6258154:6258668:6258743,	6258088	6258154	6258137	6258137	Nonsense_Mutation	G	T	p.E131*
ESCA	TCGA-R6-A6L6-01	PHF8	ENST00000338154.6,ENST00000357988.5,ENST00000396282.2,ENST00000322659.8,ENST00000338946.6	chrX	54037554:54037717:54040809:54040996:54043027:54043169,	54040810	54040996	54040952	54040952	Nonsense_Mutation	G	T	p.S250*
ESCA	TCGA-VR-A8ER-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603468	111603468	Nonsense_Mutation	G	T	p.G182*
ESCA	TCGA-L5-A43J-01	PHTF2	ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000416283.2	chr7	77569515:77569619:77569844:77569976:77572016:77572103,	77569845	77569976	77569845	77569845	Nonsense_Mutation	C	T	p.R581*
ESCA	TCGA-L5-A891-01	PI4K2B	ENST00000264864.6	chr4	25162293:25162375:25253942:25254097:25256686:25256887,25235596:25236053:25253942:25254097:25256686:25256887,	25253943	25254097	25254044	25254044	Nonsense_Mutation	G	T	p.E124*
ESCA	TCGA-L5-A893-01	PICALM	ENST00000356360.5,ENST00000532603.1	chr11	85670079:85670103:85685750:85685855:85687665:85687725,85670079:85670103:85685750:85685855:85692171:85692271,	85685751	85685855	85685805	85685805	Nonsense_Mutation	G	T	p.Y630*
ESCA	TCGA-LN-A49K-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190418	17190418	Nonsense_Mutation	C	A	p.E291*
ESCA	TCGA-VR-A8EZ-01	PIK3CD	ENST00000536656.1,ENST00000377346.4,ENST00000361110.2	chr1	9783182:9783350:9784026:9784150:9784333:9784463,	9784027	9784150	9784049	9784049	Nonsense_Mutation	G	T	p.E897*
ESCA	TCGA-LN-A8I0-01	PIK3R1	ENST00000320694.8	chr5	67586509:67586662:67588086:67588189:67588928:67589027,67584522:67584579:67588086:67588189:67588928:67589027,	67588087	67588189	67588172	67588172	Nonsense_Mutation	C	A	p.Y334*
ESCA	TCGA-LN-A8I0-01	PIKFYVE	ENST00000264380.4	chr2	209204734:209204855:209207277:209207373:209209834:209209918,	209207278	209207373	209207315	209207315	Nonsense_Mutation	C	T	p.R1657*
ESCA	TCGA-L5-A8NF-01	PKHD1	ENST00000371117.3	chr6	51497362:51497521:51503646:51503754:51512828:51512916,	51503647	51503754	51503711	51503711	Nonsense_Mutation	G	T	p.Y3814*
ESCA	TCGA-L5-A8NF-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2	chr20	9440281:9440457:9449217:9449319:9453436:9453494,	9449218	9449319	9449234	9449234	Nonsense_Mutation	C	T	p.R1077*
ESCA	TCGA-JY-A6FB-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000475273.2,ENST00000356327.5,ENST00000342215.6,ENST00000498278.1	chr3	171452654:171452760:171453281:171453427:171455321:171455449,	171453282	171453427	171453400	171453400	Nonsense_Mutation	C	A	p.E106*
ESCA	TCGA-IC-A6RE-01	PLEKHA5	ENST00000429027.2	chr12	19422749:19422819:19423121:19423139:19427449:19427917,	19423122	19423139	19423138	19423138	Nonsense_Mutation	C	T	p.R282*
ESCA	TCGA-LN-A7HY-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000539256.1,ENST00000429027.2,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19489448:19489550:19496256:19496368:19498775:19498822,	19496257	19496368	19496362	19496362	Nonsense_Mutation	G	T	p.E783*
ESCA	TCGA-Z6-AAPN-01	PLOD1	ENST00000429000.2,ENST00000376369.3,ENST00000485046.1,ENST00000196061.4	chr1	12010413:12010577:12012679:12012792:12014886:12014950,	12012680	12012792	12012751	12012751	Nonsense_Mutation	C	T	p.Q227*
ESCA	TCGA-2H-A9GR-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126736591:126736735:126737136:126737371:126739044:126739187,	126737137	126737371	126737155	126737155	Nonsense_Mutation	G	T	p.E1227*
ESCA	TCGA-LN-A4A2-01	PLXNB2	ENST00000496720.1	chr22	50722261:50722419:50722560:50722673:50723001:50723034,	50722561	50722673	50722589	50722589	Nonsense_Mutation	G	T	p.Y745*
ESCA	TCGA-LN-A4A2-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50722261:50722419:50722560:50722642:50723001:50723034,	50722561	50722642	50722589	50722589	Nonsense_Mutation	G	T	p.Y745*
ESCA	TCGA-IG-A4P3-01	PMP22	ENST00000580584.1,ENST00000312280.3,ENST00000395938.2	chr17	15134383:15134397:15142787:15142928:15162410:15162510,	15142788	15142928	15142816	15142816	Nonsense_Mutation	G	T	p.Y97*
ESCA	TCGA-L5-A8NR-01	POLR3A	ENST00000372371.3	chr10	79750866:79750925:79752954:79753125:79759738:79759876,	79752955	79753125	79753093	79753093	Nonsense_Mutation	G	T	p.C883*
ESCA	TCGA-L5-A8NM-01	POU5F1	ENST00000441888.3,ENST00000513407.1,ENST00000259915.8,ENST00000512818.1,ENST00000606567.1,ENST00000471529.2	chr6	31132128:31132644:31132904:31133063:31133347:31133478,	31132905	31133063	31132949	31132949	Nonsense_Mutation	G	A	p.Q258*
ESCA	TCGA-LN-A49Y-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67167031:67167136:67168159:67168390:67168538:67168670,	67168160	67168390	67168163	67168163	Nonsense_Mutation	C	A	p.E150*
ESCA	TCGA-L5-A4OJ-01	PPP3CC	ENST00000240139.5,ENST00000397775.3	chr8	22390433:22390531:22396981:22397011:22398127:22398569,	22396982	22397011	22396990	22396990	Nonsense_Mutation	G	T	p.E444*
ESCA	TCGA-R6-A6L6-01	PQLC1	ENST00000357575.4	chr18	77664140:77664183:77679183:77679400:77693968:77694016,77664140:77664183:77679183:77679400:77690227:77690311,77664140:77664183:77679183:77679400:77703328:77703462,	77679184	77679400	77679354	77679354	Nonsense_Mutation	G	T	p.Y146*
ESCA	TCGA-JY-A6FB-01	PRDM5	ENST00000264808.3,ENST00000502409.1	chr4	121737607:121737729:121737986:121738079:121739507:121739682,	121737987	121738079	121737990	121737990	Nonsense_Mutation	G	T	p.S247*
ESCA	TCGA-L5-A8NG-01	PRDX6	ENST00000340385.5,ENST00000470017.1	chr1	173450464:173450621:173454499:173454646:173455393:173455540,	173454500	173454646	173454533	173454533	Nonsense_Mutation	G	T	p.E96*
ESCA	TCGA-LN-A9FQ-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171510968:171511368:171514617:171514826:171519224:171519379,	171514618	171514826	171514802	171514802	Nonsense_Mutation	C	T	p.Q1650*
ESCA	TCGA-IC-A6RE-01	PSMA3	ENST00000557087.1,ENST00000555931.1,ENST00000557508.1,ENST00000554812.1,ENST00000555743.1,ENST00000216455.4,ENST00000412908.2	chr14	58727686:58727738:58730422:58730488:58734191:58734222,	58730423	58730488	58730477	58730477	Nonsense_Mutation	G	T	p.E178*
ESCA	TCGA-IG-A4P3-01	PTP4A1	ENST00000370651.3	chr6	64288802:64288933:64289161:64289236:64289961:64292331,	64289162	64289236	64289199	64289199	Nonsense_Mutation	G	T	p.G123*
ESCA	TCGA-LN-A49R-01	PTPRK	ENST00000368227.3,ENST00000368210.3,ENST00000525459.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128643395:128643455:128718710:128718833:128841403:128841503,	128718711	128718833	128718824	128718824	Nonsense_Mutation	G	T	p.Y76*
ESCA	TCGA-L5-A8NW-01	RAB2A	ENST00000466595.1,ENST00000530071.1,ENST00000531289.1,ENST00000262646.7,ENST00000452437.1	chr8	61497281:61497374:61504416:61504528:61531138:61531207,	61504417	61504528	61504469	61504469	Nonsense_Mutation	C	T	p.R139*
ESCA	TCGA-L5-A8NW-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5268416:5268533:5271664:5271763:5276608:5276749,	5271665	5271763	5271755	5271755	Nonsense_Mutation	G	T	p.E626*
ESCA	TCGA-V5-AASX-01	RAI14	ENST00000514036.1,ENST00000514527.1,ENST00000512625.1,ENST00000265109.3,ENST00000513974.1,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000503673.1,ENST00000507276.1,ENST00000514873.1,ENST00000428746.2,ENST00000502736.1,ENST00000508315.1,ENST00000512305.1,ENST00000397449.1,ENST00000504052.1	chr5	34757572:34757703:34796043:34796132:34803816:34803873,	34796044	34796132	34796083	34796083	Nonsense_Mutation	C	A	p.S64*
ESCA	TCGA-V5-AASW-01	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141248549:141248644:141259374:141259451:141272698:141272782,	141259375	141259451	141259435	141259435	Nonsense_Mutation	C	T	p.Q171*
ESCA	TCGA-IC-A6RF-01	RBFOX1	ENST00000547372.1,ENST00000535565.2,ENST00000355637.4,ENST00000552089.1	chr16	7726775:7726840:7743316:7743369:7759057:7759133,	7743317	7743369	7743345	7743345	Nonsense_Mutation	G	T	p.E385*
ESCA	TCGA-LN-A9FR-01	RICTOR	ENST00000511516.1,ENST00000357387.3,ENST00000296782.5	chr5	38942325:38942480:38942934:38943073:38944547:38944671,	38942935	38943073	38942960	38942960	Nonsense_Mutation	A	C	p.L1700*
ESCA	TCGA-LN-A9FQ-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323811	59323811	Nonsense_Mutation	G	T	p.E264*
ESCA	TCGA-LN-A4MQ-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5756346:5756397:5760663:5760803:5764954:5765069,	5760664	5760803	5760759	5760759	Nonsense_Mutation	G	A	p.R517*
ESCA	TCGA-VR-A8EZ-01	RPN1	ENST00000296255.3,ENST00000497289.1	chr3	128339001:128339436:128341006:128341252:128344376:128344496,	128341007	128341252	128341048	128341048	Nonsense_Mutation	G	A	p.Q534*
ESCA	TCGA-L5-A8NH-01	RSRC1	ENST00000480820.1,ENST00000480119.1,ENST00000295930.3,ENST00000312179.6,ENST00000464171.1	chr3	158254880:158254987:158261123:158261276:158261971:158262314,	158261124	158261276	158261202	158261202	Nonsense_Mutation	G	T	p.E280*
ESCA	TCGA-ZR-A9CJ-01	RSRC1	ENST00000480820.1,ENST00000480119.1,ENST00000295930.3,ENST00000312179.6,ENST00000464171.1	chr3	158254880:158254987:158261123:158261276:158261971:158262314,	158261124	158261276	158261208	158261208	Nonsense_Mutation	G	T	p.E282*
ESCA	TCGA-L5-A8NI-01	RUFY3	ENST00000417478.2,ENST00000536664.1,ENST00000381006.3,ENST00000502653.1,ENST00000226328.4	chr4	71648807:71648900:71650512:71650596:71654522:71654690,	71650513	71650596	71650543	71650543	Nonsense_Mutation	C	T	p.Q400*
ESCA	TCGA-JY-A6FH-01	SAMD4B	ENST00000598913.1,ENST00000314471.6,ENST00000596368.1	chr19	39847455:39847729:39860294:39860765:39866289:39866320,	39860295	39860765	39860549	39860549	Nonsense_Mutation	G	T	p.E151*
ESCA	TCGA-S8-A6BV-01	SBF1	ENST00000380817.3,ENST00000348911.6,ENST00000470434.1,ENST00000390679.3	chr22	50893444:50893571:50893652:50893838:50893909:50894011,	50893653	50893838	50893823	50893823	Nonsense_Mutation	G	A	p.Q1462*
ESCA	TCGA-L5-A4OT-01	SCAMP3	ENST00000490999.1,ENST00000302631.3,ENST00000355379.3,ENST00000465312.1,ENST00000472397.1	chr1	155227088:155227177:155227288:155227448:155228616:155228683,	155227289	155227448	155227351	155227351	Nonsense_Mutation	C	T	p.W205*
ESCA	TCGA-L5-A4OI-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958034	76958034	Nonsense_Mutation	T	A	p.K869*
ESCA	TCGA-LN-A49M-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000377246.3	chr13	78191733:78191793:78191937:78191997:78192138:78192195,	78191938	78191997	78191993	78191993	Nonsense_Mutation	C	T	p.Q523*
ESCA	TCGA-V5-AASW-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75526517:75526611:75526811:75526928:75527594:75527616,	75526812	75526928	75526866	75526866	Nonsense_Mutation	G	T	p.E650*
ESCA	TCGA-LN-A49P-01	SIK2	ENST00000304987.3	chr11	111486966:111487083:111491062:111491126:111558724:111558886,	111491063	111491126	111491117	111491117	Nonsense_Mutation	G	T	p.E103*
ESCA	TCGA-R6-A6Y2-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117169	72117169	Nonsense_Mutation	G	T	p.G646*
ESCA	TCGA-R6-A6Y2-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117169	72117169	Nonsense_Mutation	G	T	p.G646*
ESCA	TCGA-2H-A9GK-01	SLAMF9	ENST00000368093.3	chr1	159921281:159921656:159922051:159922324:159923098:159923439,	159922052	159922324	159922241	159922241	Nonsense_Mutation	C	A	p.E159*
ESCA	TCGA-IG-A3I8-01	SLC12A8	ENST00000393469.4,ENST00000314584.7,ENST00000473262.1,ENST00000423114.2,ENST00000469902.1	chr3	124839442:124839530:124854512:124854626:124906080:124906272,124839442:124839530:124854512:124854626:124896586:124896808,	124854513	124854626	124854513	124854513	Nonsense_Mutation	C	A	p.G275*
ESCA	TCGA-2H-A9GM-01	SLC13A3	ENST00000290317.5,ENST00000495082.1,ENST00000472148.1,ENST00000279027.4,ENST00000396360.1,ENST00000413164.2,ENST00000468915.1	chr20	45194994:45195029:45204211:45204324:45212210:45212308,	45204212	45204324	45204264	45204264	Nonsense_Mutation	C	T	p.W427*
ESCA	TCGA-M9-A5M8-01	SLC24A1	ENST00000399033.4,ENST00000261892.6	chr15	65916418:65918308:65930465:65930519:65931932:65932041,	65930466	65930519	65930493	65930493	Nonsense_Mutation	G	T	p.E640*
ESCA	TCGA-IC-A6RE-01	SLC25A25	ENST00000373069.5,ENST00000373066.5	chr9	130863587:130863675:130864358:130864394:130864648:130864760,	130864359	130864394	130864363	130864363	Nonsense_Mutation	C	T	p.R161*
ESCA	TCGA-IG-A6QS-01	SLC30A4	ENST00000261867.4	chr15	45778808:45778943:45779724:45779830:45781038:45781240,	45779725	45779830	45779787	45779787	Nonsense_Mutation	G	T	p.S313*
ESCA	TCGA-L5-A4OJ-01	SLC30A5	ENST00000396591.3	chr5	68419169:68419252:68423830:68423959:68425273:68425953,	68423831	68423959	68423939	68423939	Nonsense_Mutation	G	T	p.E703*
ESCA	TCGA-LN-A7HX-01	SLC41A3	ENST00000513723.1	chr3	125769785:125769893:125775200:125775356:125786789:125787023,	125775201	125775356	125775273	125775273	Nonsense_Mutation	G	T	p.C41*
ESCA	TCGA-RE-A7BO-01	SLC45A4	ENST00000517878.1,ENST00000433583.2	chr8	142229845:142229928:142231675:142231864:142318194:142318391,142229845:142229928:142231675:142231864:142264087:142264225,	142231676	142231864	142231845	142231845	Nonsense_Mutation	G	T	p.Y87*
ESCA	TCGA-L5-A8NF-01	SLC6A12	ENST00000542825.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	304391:304493:305289:305427:305935:306048,	305290	305427	305292	305292	Nonsense_Mutation	C	A	p.E442*
ESCA	TCGA-L5-A4OE-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183518342:183518423:183518898:183519058:183519885:183520056,	183518899	183519058	183519019	183519019	Nonsense_Mutation	G	T	p.E986*
ESCA	TCGA-R6-A6XQ-01	SMPDL3A	ENST00000368440.4,ENST00000539041.1	chr6	123117974:123118113:123122454:123122551:123124808:123124978,	123122455	123122551	123122527	123122527	Nonsense_Mutation	G	T	p.E182*
ESCA	TCGA-L7-A6VZ-01	SPDL1	ENST00000510751.1	chr5	169010791:169010893:169015397:169015579:169018051:169018078,	169015398	169015579	169015514	169015514	Nonsense_Mutation	G	T	p.E32*
ESCA	TCGA-JY-A93F-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20108050	20108050	Nonsense_Mutation	G	T	p.E230*
ESCA	TCGA-JY-A93D-01	SPTBN1	ENST00000333896.5,ENST00000356805.4	chr2	54859702:54859905:54864849:54864940:54870119:54870266,	54864850	54864940	54864938	54864938	Nonsense_Mutation	G	T	p.E1286*
ESCA	TCGA-IC-A6RE-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8751710	8751710	Nonsense_Mutation	G	T	p.S376*
ESCA	TCGA-JY-A6FE-01	ST6GAL2	ENST00000361803.3	chr2	107418063:107418319:107423101:107423405:107446521:107446535,	107423102	107423405	107423380	107423380	Nonsense_Mutation	G	T	p.C448*
ESCA	TCGA-L5-A4OJ-01	STARD3	ENST00000578254.1	chr17	37809870:37810003:37813162:37813338:37814027:37814051,	37813163	37813338	37813294	37813294	Nonsense_Mutation	G	T	p.E85*
ESCA	TCGA-L5-A4OJ-01	STARD3	ENST00000460894.2	chr17	37809752:37810003:37813150:37813338:37814027:37814051,	37813151	37813338	37813294	37813294	Nonsense_Mutation	G	T	p.E85*
ESCA	TCGA-L5-A4OJ-01	STARD3	ENST00000544210.2,ENST00000577248.1,ENST00000580551.1,ENST00000394250.4,ENST00000583718.1,ENST00000578232.1,ENST00000579479.1,ENST00000336308.5,ENST00000443521.1,ENST00000583582.1,ENST00000488876.1,ENST00000583419.1,ENST00000581894.1,ENST00000582874.1,ENST00000585214.1,ENST00000578577.1,ENST00000484773.2	chr17	37809870:37810003:37813260:37813338:37814027:37814051,	37813261	37813338	37813294	37813294	Nonsense_Mutation	G	T	p.E85*
ESCA	TCGA-Q9-A6FW-01	STAU2	ENST00000521727.1,ENST00000521210.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000518767.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521451.1,ENST00000523558.1	chr8	74507400:74507532:74515960:74516098:74525978:74526191,	74515961	74516098	74515978	74515978	Nonsense_Mutation	G	A	p.R338*
ESCA	TCGA-L5-A8NL-01	STT3B	ENST00000488151.1,ENST00000295770.2	chr3	31670813:31670903:31674426:31674639:31677475:31677537,	31674427	31674639	31674472	31674472	Nonsense_Mutation	G	T	p.E745*
ESCA	TCGA-L5-A8NL-01	STT3B	ENST00000463044.1	chr3	31670813:31670903:31674426:31674676:31677475:31677537,	31674427	31674676	31674472	31674472	Nonsense_Mutation	G	T	p.E745*
ESCA	TCGA-L5-A8NT-01	TANK	ENST00000392749.2,ENST00000259075.2	chr2	162081141:162081257:162087481:162088062:162091852:162091892,	162087482	162088062	162087607	162087607	Nonsense_Mutation	G	T	p.G216*
ESCA	TCGA-L5-A4OI-01	TBC1D31	ENST00000378080.2,ENST00000309336.3,ENST00000524307.1	chr8	124146353:124146446:124153000:124153141:124156956:124157095,	124153001	124153141	124153106	124153106	Nonsense_Mutation	G	T	p.E869*
ESCA	TCGA-IG-A3I8-01	TCTN1	ENST00000490514.1,ENST00000397656.4,ENST00000377654.3,ENST00000495659.2,ENST00000551590.1,ENST00000397659.4,ENST00000464809.1	chr12	111072200:111072268:111072474:111072584:111074285:111074306,111070276:111070364:111072474:111072584:111074285:111074306,	111072475	111072584	111072534	111072534	Nonsense_Mutation	G	T	p.E258*
ESCA	TCGA-L5-A43H-01	TFAP2A	ENST00000466073.1	chr6	10400680:10400822:10402724:10402843:10404740:10404827,10398920:10398938:10402724:10402843:10404740:10404827,	10402725	10402843	10402728	10402728	Nonsense_Mutation	C	A	p.E294*
ESCA	TCGA-LN-A4A6-01	TFPT	ENST00000420715.2	chr19	54613433:54613504:54617821:54618080:54618626:54618665,54611632:54611702:54617821:54618080:54618626:54618665,	54617822	54618080	54617837	54617837	Nonsense_Mutation	G	T	p.C89*
ESCA	TCGA-L5-A8NS-01	THTPA	ENST00000554970.1	chr14	24025479:24025552:24025951:24026243:24027903:24028068,	24025952	24026243	24026198	24026198	Nonsense_Mutation	G	T	p.E78*
ESCA	TCGA-L5-A8NS-01	THTPA	ENST00000556015.1	chr14	24025479:24025552:24025951:24026248:24027903:24028068,	24025952	24026248	24026198	24026198	Nonsense_Mutation	G	T	p.E78*
ESCA	TCGA-XP-A8T8-01	TMED1	ENST00000589638.1	chr19	10943726:10943889:10945609:10945739:10945931:10946029,	10945610	10945739	10945729	10945729	Nonsense_Mutation	C	A	p.E116*
ESCA	TCGA-XP-A8T8-01	TMED1	ENST00000588259.1	chr19	10943726:10943889:10945609:10945793:10945931:10946029,10943726:10943889:10945609:10945793:10946684:10946877,	10945610	10945793	10945729	10945729	Nonsense_Mutation	C	A	p.E116*
ESCA	TCGA-JY-A6FH-01	TMEM145	ENST00000598766.1,ENST00000301204.3	chr19	42821021:42821115:42821860:42822033:42824468:42824589,	42821861	42822033	42821921	42821921	Nonsense_Mutation	G	T	p.G321*
ESCA	TCGA-L5-A8NW-01	TMTC1	ENST00000539277.1,ENST00000256062.5	chr12	29757110:29757232:29786079:29786269:29793492:29794171,29757151:29757232:29786079:29786269:29812812:29812916,29757110:29757232:29786079:29786269:29904598:29904805,	29786080	29786269	29786082	29786082	Nonsense_Mutation	T	A	p.K268*
ESCA	TCGA-L5-A8NH-01	TNPO3	ENST00000482320.1,ENST00000471166.1,ENST00000393245.1,ENST00000265388.5,ENST00000471234.1	chr7	128641112:128641288:128645069:128645213:128655032:128655189,	128645070	128645213	128645134	128645134	Nonsense_Mutation	A	T	p.L211*
ESCA	TCGA-L5-A8NM-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748969	43748969	Nonsense_Mutation	C	A	p.E613*
ESCA	TCGA-R6-A6Y2-01	TPO	ENST00000382201.3	chr2	1480857:1481376:1488367:1488626:1491592:1491763,1480857:1481376:1488367:1488626:1497573:1497811,	1488368	1488626	1488582	1488582	Nonsense_Mutation	G	A	p.W518*
ESCA	TCGA-VR-AA7D-01	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000329066.4,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3	chr2	1499778:1499969:1500366:1500537:1507719:1507851,	1500367	1500537	1500468	1500468	Nonsense_Mutation	G	T	p.E773*
ESCA	TCGA-L5-A4OI-01	TPP1	ENST00000534644.1,ENST00000528571.1	chr11	6638600:6638659:6638856:6639007:6640426:6640498,	6638857	6639007	6638871	6638871	Nonsense_Mutation	G	T	p.C122*
ESCA	TCGA-LN-A4MQ-01	TPX2	ENST00000340513.4,ENST00000300403.6	chr20	30382204:30382351:30385206:30385318:30386167:30386355,	30385207	30385318	30385276	30385276	Nonsense_Mutation	C	T	p.Q671*
ESCA	TCGA-VR-A8EQ-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2133695:2133817:2134228:2134716:2134951:2135027,	2134229	2134716	2134649	2134649	Nonsense_Mutation	G	T	p.E1476*
ESCA	TCGA-XP-A8T7-01	TSPAN11	ENST00000546076.1	chr12	31079837:31079939:31106914:31107009:31116760:31116952,31079681:31079730:31106914:31107009:31116760:31116952,	31106915	31107009	31106947	31106947	Nonsense_Mutation	C	T	p.Q8*
ESCA	TCGA-R6-A8WG-01	UBR1	ENST00000569971.1,ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43335541:43335593:43339358:43339487:43340589:43340689,	43339359	43339487	43339472	43339472	Nonsense_Mutation	G	A	p.R519*
ESCA	TCGA-LN-A49P-01	UBR7	ENST00000554232.1	chr14	93673400:93673786:93676169:93676303:93676993:93677054,	93676170	93676303	93676302	93676302	Nonsense_Mutation	A	T	p.R95*
ESCA	TCGA-2H-A9GK-01	UBXN4	ENST00000272638.9	chr2	136513197:136513261:136519387:136519481:136527338:136527393,	136519388	136519481	136519420	136519420	Nonsense_Mutation	C	T	p.Q181*
ESCA	TCGA-IG-A5B8-01	UNKL	ENST00000503648.1,ENST00000301712.5,ENST00000508903.2	chr16	1453237:1453345:1463846:1464056:1464615:1464692,	1463847	1464056	1463960	1463960	Nonsense_Mutation	G	C	p.S43*
ESCA	TCGA-IG-A5B8-01	UNKL	ENST00000382757.5	chr16	1453237:1453345:1463846:1464010:1464615:1464692,	1463847	1464010	1463960	1463960	Nonsense_Mutation	G	C	p.S43*
ESCA	TCGA-Z6-AAPN-01	UPF3A	ENST00000475218.2,ENST00000375299.3,ENST00000351487.5	chr13	115064314:115064475:115067205:115067500:115070263:115070424,	115067206	115067500	115067486	115067486	Nonsense_Mutation	C	T	p.R430*
ESCA	TCGA-LN-A7HX-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778244	84778244	Nonsense_Mutation	G	T	p.E57*
ESCA	TCGA-Z6-A8JD-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000559711.1,ENST00000559257.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000539772.1,ENST00000538686.2,ENST00000561326.1,ENST00000559192.1,ENST00000540797.1	chr15	63855093:63855207:63862631:63862778:63866244:63866351,	63862632	63862778	63862741	63862741	Nonsense_Mutation	G	T	p.E291*
ESCA	TCGA-L5-A4OI-01	UTP20	ENST00000261637.4	chr12	101738372:101738528:101739331:101739472:101740228:101740366,	101739332	101739472	101739437	101739437	Nonsense_Mutation	G	T	p.E1571*
ESCA	TCGA-XP-A8T8-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6843145:6843177:6848008:6848125:6850680:6850768,	6848009	6848125	6848009	6848009	Nonsense_Mutation	G	A	p.W671*
ESCA	TCGA-JY-A6F8-01	VAV3	ENST00000529413.1,ENST00000525231.1,ENST00000544443.1	chr1	108160205:108160254:108185240:108185377:108226109:108226155,108160205:108160254:108185240:108185377:108231002:108231028,	108185241	108185377	108185341	108185341	Nonsense_Mutation	C	A	p.E30*
ESCA	TCGA-L7-A6VZ-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833726	82833726	Nonsense_Mutation	C	A	p.S1635*
ESCA	TCGA-R6-A6Y2-01	VCP	ENST00000493886.1,ENST00000358901.6	chr9	35057372:35057527:35059060:35059216:35059489:35059589,	35059061	35059216	35059171	35059171	Nonsense_Mutation	C	A	p.G684*
ESCA	TCGA-JY-A93D-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100205103:100205285:100286425:100286560:100287308:100287482,	100286426	100286560	100286534	100286534	Nonsense_Mutation	C	A	p.S875*
ESCA	TCGA-IC-A6RF-01	VPS13D	ENST00000356315.4,ENST00000358136.3	chr1	12309279:12309396:12313778:12313883:12316389:12316560,	12313779	12313883	12313875	12313875	Nonsense_Mutation	G	T	p.E221*
ESCA	TCGA-L5-A4OX-01	VPS36	ENST00000378060.4	chr13	52992126:52992191:52997708:52997774:53000066:53000201,	52997709	52997774	52997736	52997736	Nonsense_Mutation	G	T	p.C271*
ESCA	TCGA-R6-A6Y0-01	VWA3A	ENST00000299840.6,ENST00000389398.5	chr16	22157592:22157665:22159482:22159627:22161107:22161252,	22159483	22159627	22159581	22159581	Nonsense_Mutation	G	T	p.E980*
ESCA	TCGA-LN-A5U7-01	VWF	ENST00000261405.5	chr12	6166022:6166238:6167014:6167210:6172119:6172220,	6167015	6167210	6167105	6167105	Nonsense_Mutation	C	A	p.E547*
ESCA	TCGA-JY-A93D-01	WBP1L	ENST00000369889.4,ENST00000448841.1	chr10	104557749:104557852:104569649:104569811:104572351:104575997,	104569650	104569811	104569775	104569775	Nonsense_Mutation	G	T	p.E107*
ESCA	TCGA-VR-A8EU-01	WDR1	ENST00000499869.2,ENST00000382452.2,ENST00000508079.1	chr4	10090287:10090365:10099334:10099515:10100615:10100763,	10099335	10099515	10099383	10099383	Nonsense_Mutation	G	T	p.C170*
ESCA	TCGA-JY-A6FE-01	WDR66	ENST00000540779.1,ENST00000397454.2,ENST00000288912.4	chr12	122359313:122359589:122361527:122361896:122369651:122369792,	122361528	122361896	122361696	122361696	Nonsense_Mutation	G	T	p.E183*
ESCA	TCGA-L5-A8NK-01	WEE1	ENST00000299613.6,ENST00000450114.2	chr11	9598688:9598810:9603078:9603225:9606804:9606900,	9603079	9603225	9603162	9603162	Nonsense_Mutation	C	T	p.Q409*
ESCA	TCGA-L5-A8NN-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099625	168099625	Nonsense_Mutation	C	T	p.Q575*
ESCA	TCGA-2H-A9GN-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000562408.1	chr16	28124224:28124371:28132990:28133083:28137009:28137169,28128638:28128783:28132990:28133083:28137009:28137169,	28132991	28133083	28133018	28133018	Nonsense_Mutation	G	T	p.S611*
ESCA	TCGA-Z6-AAPN-01	YAF2	ENST00000551528.1,ENST00000548661.1,ENST00000551268.1,ENST00000552928.1,ENST00000547254.1	chr12	42592937:42593037:42604156:42604256:42604349:42604421,42555550:42555567:42604156:42604256:42604349:42604421,	42604157	42604256	42604227	42604227	Nonsense_Mutation	G	C	p.S119*
ESCA	TCGA-LN-A8I0-01	ZC2HC1C	ENST00000439583.2	chr14	75536376:75536452:75537257:75538099:75544234:75544522,	75537258	75538099	75537781	75537781	Nonsense_Mutation	G	T	p.E169*
ESCA	TCGA-LN-A8I0-01	ZC2HC1C	ENST00000238686.8	chr14	75536376:75536452:75537257:75538441:75544234:75544522,	75537258	75538441	75537781	75537781	Nonsense_Mutation	G	T	p.E169*
ESCA	TCGA-LN-A8I0-01	ZC2HC1C	ENST00000524913.1	chr14	75536376:75536452:75537257:75538614:75544234:75544522,	75537258	75538614	75537781	75537781	Nonsense_Mutation	G	T	p.E169*
ESCA	TCGA-L5-A8NM-01	ZCWPW1	ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100014688:100014806:100016733:100016812:100017252:100017436,	100016734	100016812	100016812	100016812	Nonsense_Mutation	C	A	p.E95*
ESCA	TCGA-L5-A4OI-01	ZDHHC15	ENST00000373361.3,ENST00000373367.3,ENST00000541184.1	chrX	74598996:74599033:74636921:74637025:74641698:74641825,	74636922	74637025	74636981	74636981	Nonsense_Mutation	G	T	p.S303*
ESCA	TCGA-LN-A8I0-01	ZFAND1	ENST00000517353.1,ENST00000521742.1,ENST00000519820.1,ENST00000518419.1,ENST00000220669.5,ENST00000519523.1,ENST00000523096.1,ENST00000519464.1	chr8	82627243:82627349:82629483:82629523:82630416:82630459,	82629484	82629523	82629519	82629519	Nonsense_Mutation	C	A	p.E35*
ESCA	TCGA-2H-A9GF-01	ZFAND3	ENST00000287218.4,ENST00000373389.5	chr6	37897734:37897775:38029368:38029551:38050167:38050233,	38029369	38029551	38029503	38029503	Nonsense_Mutation	C	T	p.Q83*
ESCA	TCGA-VR-A8EX-01	ZFYVE26	ENST00000555452.1,ENST00000554557.1,ENST00000347230.4,ENST00000394455.2	chr14	68228082:68228301:68228919:68229129:68229388:68229536,	68228920	68229129	68228958	68228958	Nonsense_Mutation	C	A	p.E2111*
ESCA	TCGA-JY-A6F8-01	ZNF385D	ENST00000281523.2	chr3	21465454:21465556:21466983:21467162:21478461:21478695,	21466984	21467162	21467079	21467079	Nonsense_Mutation	C	A	p.G253*
ESCA	TCGA-R6-A6Y0-01	ZNF517	ENST00000528012.1	chr8	146028287:146028332:146029025:146029152:146029509:146029623,146028272:146028332:146029025:146029152:146029530:146029623,	146029026	146029152	146029026	146029026	Nonsense_Mutation	G	T	p.E12*
ESCA	TCGA-L5-A891-01	ZNF571	ENST00000451802.2,ENST00000358744.3,ENST00000328550.2,ENST00000593133.1	chr19	38057086:38057193:38074871:38074998:38077568:38077646,	38074872	38074998	38074877	38074877	Nonsense_Mutation	G	C	p.S44*
ESCA	TCGA-LN-A4MR-01	ZNF737	ENST00000427401.4,ENST00000596797.1	chr19	20735280:20735376:20736514:20736641:20748443:20748541,	20736515	20736641	20736632	20736632	Nonsense_Mutation	G	T	p.C37*
ESCA	TCGA-VR-A8EQ-01	ZNF783	ENST00000378052.1,ENST00000481519.1	chr7	148990467:148990583:148990841:148991107:148991470:148991503,	148990842	148991107	148991029	148991029	Nonsense_Mutation	C	T	p.R244*
ESCA	TCGA-2H-A9GI-01	ZP3	ENST00000394860.3	chr7	76069566:76069658:76069755:76069928:76071158:76071379,	76069756	76069928	76069838	76069838	Nonsense_Mutation	A	T	p.K324*
ESCA	TCGA-2H-A9GI-01	ZP3	ENST00000336517.4,ENST00000416245.1,ENST00000467555.1,ENST00000394857.3,ENST00000466960.1	chr7	76069566:76069658:76069791:76069928:76071158:76071379,	76069792	76069928	76069838	76069838	Nonsense_Mutation	A	T	p.K324*
ESCA	TCGA-Z6-A9VB-01	ZSCAN32	ENST00000573327.1,ENST00000396852.4,ENST00000574940.1,ENST00000396846.3	chr16	3440009:3440183:3440422:3440517:3447191:3447194,3440009:3440183:3440422:3440517:3443648:3443814,3440009:3440133:3440422:3440517:3447191:3447194,3440009:3440133:3440422:3440517:3443648:3443814,	3440423	3440517	3440513	3440513	Nonsense_Mutation	C	T	p.W179*
GBM	TCGA-02-2470-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
GBM	TCGA-02-2470-01	DET1	ENST00000557842.1	chr15	89054789:89054817:89055581:89056371:89060012:89060204,	89055582	89056371	89056199	89056199	Nonsense_Mutation	G	A	p.R557*
GBM	TCGA-06-0119-01	SLC26A11	ENST00000546047.2	chr17	78194267:78194295:78195216:78195593:78196453:78196646,	78195217	78195593	78195495	78195495	Nonsense_Mutation	C	T	p.Q46*
GBM	TCGA-06-0119-01	SLC26A11	ENST00000572725.1	chr17	78194267:78194295:78195346:78195593:78196453:78196646,	78195347	78195593	78195495	78195495	Nonsense_Mutation	C	T	p.Q46*
GBM	TCGA-06-0122-01	PRKD3	ENST00000379066.1,ENST00000443187.1,ENST00000494667.1,ENST00000234179.2,ENST00000475912.1	chr2	37513374:37513512:37516498:37516656:37518010:37518105,	37516499	37516656	37516578	37516578	Nonsense_Mutation	G	C	p.S213*
GBM	TCGA-06-0125-02	NFATC1	ENST00000329101.4,ENST00000427363.2,ENST00000545796.1,ENST00000253506.5,ENST00000318065.5,ENST00000590313.1,ENST00000397790.2	chr18	77221310:77221366:77227449:77227582:77246247:77246630,	77227450	77227582	77227543	77227543	Nonsense_Mutation	C	T	p.R685*
GBM	TCGA-06-0128-01	PPIL6	ENST00000440797.2,ENST00000447468.3,ENST00000521072.2	chr6	109748296:109748359:109752359:109752548:109761658:109761707,109748296:109748359:109752359:109752548:109757306:109757402,	109752360	109752548	109752491	109752491	Nonsense_Mutation	G	A	p.Q97*
GBM	TCGA-06-0129-01	EXOC1	ENST00000349598.6	chr4	56744082:56744232:56749988:56750094:56756388:56756552,	56749989	56750094	56750010	56750010	Nonsense_Mutation	C	T	p.R416*
GBM	TCGA-06-0129-01	DYNC1I1	ENST00000359388.4,ENST00000324972.6,ENST00000437599.1,ENST00000457059.1,ENST00000447467.2,ENST00000537881.1	chr7	95625259:95625385:95657486:95657633:95661978:95662092,	95657487	95657633	95657586	95657586	Nonsense_Mutation	C	T	p.R374*
GBM	TCGA-06-0137-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000369359.4,ENST00000369356.4	chr1	144867920:144868172:144873876:144874029:144874680:144874904,144871695:144871881:144873876:144874029:144874680:144874781,	144873877	144874029	144873981	144873981	Nonsense_Mutation	G	T	p.S1659*
GBM	TCGA-06-0137-01	CD44	ENST00000449691.2	chr11	35226063:35226187:35227658:35227790:35229651:35229711,35223225:35223334:35227658:35227790:35229651:35229711,	35227659	35227790	35227763	35227763	Nonsense_Mutation	C	T	p.R463*
GBM	TCGA-06-0137-01	CD44	ENST00000526553.1	chr11	35226063:35226187:35227661:35227790:35229651:35229711,	35227662	35227790	35227763	35227763	Nonsense_Mutation	C	T	p.R463*
GBM	TCGA-06-0140-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951144	48951144	Nonsense_Mutation	C	T	p.Q436*
GBM	TCGA-06-0145-01	TEAD4	ENST00000443986.2,ENST00000544666.1,ENST00000359864.2,ENST00000358409.2,ENST00000397122.2	chr12	3127710:3127754:3128280:3128336:3129799:3129925,	3128281	3128336	3128315	3128315	Nonsense_Mutation	C	T	p.Q188*
GBM	TCGA-06-0145-01	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1,ENST00000540597.1	chr19	55501869:55502040:55505636:55505807:55508684:55508855,	55505637	55505807	55505643	55505643	Nonsense_Mutation	G	A	p.W905*
GBM	TCGA-06-0152-01	DOCK7	ENST00000340370.5,ENST00000251157.5,ENST00000454575.1	chr1	62979386:62979569:62993821:62993976:62994947:62995117,	62993822	62993976	62993826	62993826	Nonsense_Mutation	G	C	p.S1311*
GBM	TCGA-06-0152-01	TRIM55	ENST00000276573.7,ENST00000353317.5,ENST00000315962.4	chr8	67049329:67049425:67061879:67062113:67062451:67062474,	67061880	67062113	67062093	67062093	Nonsense_Mutation	G	T	p.E273*
GBM	TCGA-06-0154-01	KLC2	ENST00000421552.1,ENST00000394065.2,ENST00000394067.2,ENST00000316924.5,ENST00000394066.2,ENST00000417856.1	chr11	66032638:66032706:66033125:66033234:66033324:66033483,	66033126	66033234	66033175	66033175	Nonsense_Mutation	C	T	p.Q462*
GBM	TCGA-06-0157-01	GATA4	ENST00000335135.4,ENST00000526716.1,ENST00000532059.1,ENST00000528712.1	chr8	11606427:11606594:11607619:11607745:11612554:11612642,	11607620	11607745	11607632	11607632	Nonsense_Mutation	C	T	p.R267*
GBM	TCGA-06-0158-01	TRIM38	ENST00000357085.3,ENST00000349458.3	chr6	25963276:25963510:25966562:25967161:25969552:25969648,	25966563	25967161	25966964	25966964	Nonsense_Mutation	C	T	p.R72*
GBM	TCGA-06-0165-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16043433:16043656:16101672:16101849:16103632:16103758,	16101673	16101849	16101808	16101808	Nonsense_Mutation	C	T	p.R62*
GBM	TCGA-06-0168-01	MTA3	ENST00000405592.1,ENST00000430763.1,ENST00000407270.3,ENST00000406911.1,ENST00000406652.1,ENST00000461256.1,ENST00000405094.1,ENST00000454356.1,ENST00000409019.1	chr2	42871266:42871384:42883339:42883442:42886902:42886916,	42883340	42883442	42883411	42883411	Nonsense_Mutation	C	T	p.R135*
GBM	TCGA-06-0169-01	FBXO7	ENST00000425028.1,ENST00000266087.7,ENST00000382058.3,ENST00000420700.1,ENST00000397426.1	chr22	32883731:32883815:32887072:32887168:32889091:32889268,	32887073	32887168	32887162	32887162	Nonsense_Mutation	C	T	p.R321*
GBM	TCGA-06-0173-01	GALP	ENST00000357330.2	chr19	56688477:56688564:56691954:56692003:56693540:56693603,	56691955	56692003	56691958	56691958	Nonsense_Mutation	C	T	p.R31*
GBM	TCGA-06-0174-01	BBS9	ENST00000350941.3	chr7	33388679:33388782:33397466:33397607:33407378:33407474,	33397467	33397607	33397475	33397475	Nonsense_Mutation	C	T	p.R521*
GBM	TCGA-06-0184-01	GPR161	ENST00000361697.2,ENST00000537209.1,ENST00000271357.5,ENST00000367835.1,ENST00000367838.1,ENST00000493800.1	chr1	168059801:168059906:168065745:168066470:168073714:168074132,	168065746	168066470	168065791	168065791	Nonsense_Mutation	G	A	p.R372*
GBM	TCGA-06-0184-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903619	5903619	Nonsense_Mutation	C	T	p.R277*
GBM	TCGA-06-0185-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35548294	35548294	Nonsense_Mutation	C	A	p.C592*
GBM	TCGA-06-0188-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953730	48953730	Nonsense_Mutation	C	T	p.R445_splice
GBM	TCGA-06-0192-01	ARNTL2	ENST00000261178.5	chr12	27485987:27486036:27521194:27521345:27533179:27533337,	27521195	27521345	27521311	27521311	Nonsense_Mutation	C	T	p.R50*
GBM	TCGA-06-0192-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37369037	37369037	Nonsense_Mutation	T	G	p.L1887*
GBM	TCGA-06-0192-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3,ENST00000524038.1	chr5	167858368:167858449:167868686:167868839:167871498:167871590,	167868687	167868839	167868746	167868746	Nonsense_Mutation	G	A	p.W780*
GBM	TCGA-06-0192-01	WWC1	ENST00000522140.1	chr5	167858368:167858449:167868686:167868854:167871498:167871590,	167868687	167868854	167868746	167868746	Nonsense_Mutation	G	A	p.W780*
GBM	TCGA-06-0209-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547973	19547973	Nonsense_Mutation	C	T	p.R328*
GBM	TCGA-06-0210-02	NF1	ENST00000487476.1,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29490203:29490394:29496908:29497015:29508439:29508507,	29496909	29497015	29497003	29497003	Nonsense_Mutation	C	T	p.R192*
GBM	TCGA-06-0211-02	ITSN1	ENST00000381291.4,ENST00000440794.1,ENST00000399355.2,ENST00000381318.3	chr21	35172226:35172233:35174733:35174748:35183278:35183526,	35174734	35174748	35174748	35174748	Nonsense_Mutation	G	A	p.W773_splice
GBM	TCGA-06-0211-02	ITSN1	ENST00000419241.1	chr21	35172111:35172233:35174740:35174748:35183278:35183526,	35174741	35174748	35174748	35174748	Nonsense_Mutation	G	A	p.W773_splice
GBM	TCGA-06-0213-01	DCN	ENST00000052754.5,ENST00000393155.1,ENST00000552962.1	chr12	91550851:91550965:91552072:91552286:91558381:91558494,	91552073	91552286	91552214	91552214	Nonsense_Mutation	G	A	p.R133*
GBM	TCGA-06-0216-01	BNIP3	ENST00000540159.1	chr10	133786537:133786622:133787296:133787447:133795264:133795427,	133787297	133787447	133787377	133787377	Nonsense_Mutation	A	T	p.Y39*
GBM	TCGA-06-0216-01	EFNA5	ENST00000509503.1	chr5	106723406:106723472:106762917:106763210:107006189:107006328,	106762918	106763210	106762936	106762936	Nonsense_Mutation	G	A	p.R134*
GBM	TCGA-06-0219-01	HS1BP3	ENST00000402541.1,ENST00000304031.3	chr2	20838195:20838412:20840732:20840940:20845099:20845255,	20840733	20840940	20840922	20840922	Nonsense_Mutation	C	A	p.E73*
GBM	TCGA-06-0219-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327129	188327129	Nonsense_Mutation	C	T	p.Q204*
GBM	TCGA-06-0219-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047530	125047530	Nonsense_Mutation	C	T	p.R767*
GBM	TCGA-06-0646-01	C5	ENST00000223642.1	chr9	123744121:123744217:123744932:123745092:123751323:123751399,	123744933	123745092	123745005	123745005	Nonsense_Mutation	C	T	p.W1106*
GBM	TCGA-06-0648-01	SMYD2	ENST00000471645.1	chr1	214503510:214503621:214504292:214507651:214510046:214510177,	214504293	214507651	214505455	214505455	Nonsense_Mutation	C	A	p.Y344*
GBM	TCGA-06-0648-01	LGALS13	ENST00000600141.1	chr19	40093176:40093223:40095830:40096028:40097862:40097899,	40095831	40096028	40095888	40095888	Nonsense_Mutation	C	T	p.R55*
GBM	TCGA-06-0649-01	SLAMF8	ENST00000471286.1,ENST00000289707.5	chr1	159799797:159799982:159802665:159802971:159803051:159803159,	159802666	159802971	159802791	159802791	Nonsense_Mutation	C	T	p.R165*
GBM	TCGA-06-0649-01	GUCY2C	ENST00000261170.3	chr12	14825806:14825892:14827558:14827694:14829787:14829905,	14827559	14827694	14827688	14827688	Nonsense_Mutation	G	A	p.R319*
GBM	TCGA-06-0686-01	SMARCD2	ENST00000584400.1,ENST00000323347.10,ENST00000225742.9,ENST00000448276.2	chr17	61912064:61912160:61912771:61912927:61914281:61914404,	61912772	61912927	61912798	61912798	Nonsense_Mutation	G	A	p.R233*
GBM	TCGA-06-0745-01	C8orf34	ENST00000521406.1,ENST00000539993.1,ENST00000348340.2,ENST00000518698.1,ENST00000337103.4	chr8	69358563:69358695:69380926:69381055:69400257:69400286,	69380927	69381055	69381052	69381052	Nonsense_Mutation	C	T	p.R245*
GBM	TCGA-06-0749-01	FUT8	ENST00000360689.5,ENST00000394585.1,ENST00000342677.6	chr14	65922338:65922436:66028054:66028484:66082695:66082811,	66028055	66028484	66028372	66028372	Nonsense_Mutation	C	T	p.R31*
GBM	TCGA-06-0749-01	CREBBP	ENST00000262367.5	chr16	3832684:3832927:3841981:3842095:3843386:3843627,	3841982	3842095	3842056	3842056	Nonsense_Mutation	C	T	p.W419*
GBM	TCGA-06-0875-01	C12orf4	ENST00000541014.1	chr12	4639034:4639216:4643322:4643468:4647574:4647609,	4643323	4643468	4643363	4643363	Nonsense_Mutation	A	C	p.L95*
GBM	TCGA-06-0876-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000423057.2,ENST00000437633.1,ENST00000494651.2	chr7	111387322:111387499:111395570:111395657:111398679:111398846,	111395571	111395657	111395650	111395650	Nonsense_Mutation	C	T	p.W1482*
GBM	TCGA-06-0939-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
GBM	TCGA-06-0939-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953730	48953730	Nonsense_Mutation	C	T	p.R445_splice
GBM	TCGA-06-2557-01	NAPB	ENST00000472855.1	chr20	23377708:23377825:23383629:23383709:23401941:23402051,23375558:23375636:23383629:23383709:23401941:23402051,	23383630	23383709	23383673	23383673	Nonsense_Mutation	A	T	p.Y45*
GBM	TCGA-06-2563-01	SCNN1A	ENST00000228916.2,ENST00000539030.1,ENST00000366131.2,ENST00000360168.3,ENST00000540037.1,ENST00000538979.1,ENST00000358945.3,ENST00000396966.2,ENST00000543768.1,ENST00000338748.5	chr12	6463603:6463721:6463915:6464014:6464437:6464502,	6463916	6464014	6463925	6463925	Nonsense_Mutation	G	T	p.Y470*
GBM	TCGA-06-2563-01	ZPBP	ENST00000046087.2	chr7	50097584:50097737:50121369:50121495:50129224:50129305,	50121370	50121495	50121433	50121433	Nonsense_Mutation	G	A	p.R91*
GBM	TCGA-06-2567-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
GBM	TCGA-06-5411-01	ABI2	ENST00000422719.1	chr2	204259470:204259569:204260378:204260503:204267298:204267400,204255768:204255866:204260378:204260503:204267298:204267400,	204260379	204260503	204260428	204260428	Nonsense_Mutation	C	T	p.R259*
GBM	TCGA-06-5411-01	ABI2	ENST00000451591.2	chr2	204259470:204259569:204260381:204260503:204267298:204267400,	204260382	204260503	204260428	204260428	Nonsense_Mutation	C	T	p.R259*
GBM	TCGA-06-5412-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9563375:9563548:9570154:9570681:9577061:9577189,	9570155	9570681	9570482	9570482	Nonsense_Mutation	G	A	p.Q416*
GBM	TCGA-06-5414-01	OLFML1	ENST00000329293.3,ENST00000530135.1	chr11	7507105:7507235:7509357:7509646:7530628:7531580,	7509358	7509646	7509544	7509544	Nonsense_Mutation	C	T	p.R106*
GBM	TCGA-06-5415-01	DSG1	ENST00000257192.4	chr18	28911663:28911830:28913551:28913686:28913979:28914165,	28913552	28913686	28913591	28913591	Nonsense_Mutation	C	T	p.R242*
GBM	TCGA-06-5417-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
GBM	TCGA-06-5418-01	CAMK1	ENST00000256460.3	chr3	9799075:9799305:9799412:9799530:9801171:9801251,	9799413	9799530	9799491	9799491	Nonsense_Mutation	T	A	p.K318*
GBM	TCGA-06-5858-01	BLZF1	ENST00000367808.3,ENST00000426663.1,ENST00000329281.2	chr1	169345777:169346217:169347567:169347767:169349718:169349800,	169347568	169347767	169347745	169347745	Nonsense_Mutation	C	T	p.R216*
GBM	TCGA-06-5858-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
GBM	TCGA-06-5859-01	NPRL2	ENST00000232501.3,ENST00000476064.1,ENST00000429366.1,ENST00000433999.1,ENST00000461020.1,ENST00000479512.1,ENST00000448302.1,ENST00000433381.1,ENST00000418825.1,ENST00000451194.1	chr3	50386115:50386213:50386304:50386441:50386816:50386921,	50386305	50386441	50386328	50386328	Nonsense_Mutation	G	A	p.Q188*
GBM	TCGA-06-6388-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123202413:123202506:123204998:123205173:123210181:123210321,	123204999	123205173	123205085	123205085	Nonsense_Mutation	T	A	p.Y815*
GBM	TCGA-06-6391-01	NTRK1	ENST00000368196.3,ENST00000524377.1,ENST00000530298.1,ENST00000358660.3,ENST00000392302.2	chr1	156838296:156838439:156841414:156841547:156843424:156843682,	156841415	156841547	156841494	156841494	Nonsense_Mutation	G	A	p.W266*
GBM	TCGA-06-6391-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938530	76938530	Nonsense_Mutation	C	A	p.E740*
GBM	TCGA-06-6694-01	FAM19A4	ENST00000295569.7,ENST00000495737.1	chr3	68802066:68802169:68929880:68929996:68934325:68934461,	68929881	68929996	68929927	68929927	Nonsense_Mutation	G	T	p.C28*
GBM	TCGA-06-6697-01	NCOA2	ENST00000452400.2	chr8	71053511:71053634:71056876:71057083:71060507:71060621,	71056877	71057083	71057069	71057069	Nonsense_Mutation	G	A	p.R874*
GBM	TCGA-06-6698-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285033	217285033	Nonsense_Mutation	C	T	p.Q292*
GBM	TCGA-06-6699-01	TEX11	ENST00000374333.2,ENST00000395889.2,ENST00000374320.2,ENST00000344304.3	chrX	69811600:69811673:69825250:69825367:69826808:69826879,	69825251	69825367	69825267	69825267	Nonsense_Mutation	G	T	p.S699*
GBM	TCGA-06-6700-01	MFAP5	ENST00000540087.1,ENST00000537009.1,ENST00000544211.1,ENST00000544889.1,ENST00000396549.2,ENST00000433590.2,ENST00000535336.1,ENST00000359478.2,ENST00000537128.1,ENST00000538107.1,ENST00000534833.1	chr12	8808381:8808426:8813458:8813494:8814642:8814669,	8813459	8813494	8813465	8813465	Nonsense_Mutation	G	A	p.R30*
GBM	TCGA-12-0619-01	SLC2A3	ENST00000075120.7	chr12	8078439:8078544:8082279:8082467:8083075:8083238,	8082280	8082467	8082342	8082342	Nonsense_Mutation	G	A	p.R267*
GBM	TCGA-12-0619-01	RASAL1	ENST00000548972.1,ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000546727.1,ENST00000418411.2	chr12	113565616:113565678:113565869:113565983:113568689:113568746,	113565870	113565983	113565893	113565893	Nonsense_Mutation	G	C	p.Y71*
GBM	TCGA-12-0821-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4	chr14	94847207:94847478:94848928:94849578:94854896:94854926,	94848929	94849578	94849084	94849084	Nonsense_Mutation	G	T	p.S164*
GBM	TCGA-12-0821-01	ZNRF3	ENST00000402174.1,ENST00000406323.3,ENST00000544604.2,ENST00000332811.4	chr22	29439286:29439418:29440767:29440878:29442703:29442871,	29440768	29440878	29440867	29440867	Nonsense_Mutation	C	T	p.R245*
GBM	TCGA-12-3649-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235860382:235860572:235866046:235866277:235872390:235872608,	235866047	235866277	235866229	235866229	Nonsense_Mutation	G	A	p.R3398*
GBM	TCGA-12-3649-01	SLC4A10	ENST00000446228.1,ENST00000446997.1,ENST00000272716.5,ENST00000375514.5,ENST00000421911.1,ENST00000415876.2	chr2	162807196:162807358:162813498:162813750:162814996:162815065,	162813499	162813750	162813661	162813661	Nonsense_Mutation	A	T	p.K902*
GBM	TCGA-12-3652-01	HHIPL2	ENST00000468172.1,ENST00000343410.6	chr1	222700310:222700392:222705307:222705453:222711989:222712116,	222705308	222705453	222705452	222705452	Nonsense_Mutation	G	A	p.G526_splice
GBM	TCGA-12-5295-01	SCARB1	ENST00000546215.1,ENST00000415380.2,ENST00000538291.1,ENST00000544327.1,ENST00000535005.1,ENST00000540495.1,ENST00000261693.6,ENST00000339570.5,ENST00000376788.1,ENST00000541205.1	chr12	125292311:125292473:125294719:125294835:125296415:125296511,	125294720	125294835	125294730	125294730	Nonsense_Mutation	C	A	p.E278*
GBM	TCGA-12-5299-01	RCAN3	ENST00000412742.2	chr1	24841020:24841057:24857707:24857881:24859572:24859744,24840862:24841057:24857707:24857881:24861582:24861769,	24857708	24857881	24857822	24857822	Nonsense_Mutation	C	T	p.R104*
GBM	TCGA-12-5301-01	ANPEP	ENST00000300060.6	chr15	90347721:90347848:90348308:90348448:90348551:90348603,	90348309	90348448	90348339	90348339	Nonsense_Mutation	G	C	p.Y289*
GBM	TCGA-12-5301-01	ANPEP	ENST00000560028.1	chr15	90347721:90347848:90348176:90348448:90348551:90348603,	90348177	90348448	90348339	90348339	Nonsense_Mutation	G	C	p.Y289*
GBM	TCGA-14-0740-01	BTBD16	ENST00000368994.2,ENST00000260723.4	chr10	124058518:124058649:124066703:124066823:124088994:124089086,	124066704	124066823	124066797	124066797	Nonsense_Mutation	T	A	p.Y295*
GBM	TCGA-14-0789-01	VEGFA	ENST00000519767.1	chr6	43746625:43746655:43748468:43748540:43749692:43749789,43746625:43746655:43748468:43748540:43752277:43752295,	43748469	43748540	43748479	43748479	Nonsense_Mutation	C	T	p.R325*
GBM	TCGA-14-0789-01	VEGFA	ENST00000523873.1,ENST00000372055.4	chr6	43746625:43746655:43748468:43748591:43749692:43749789,	43748469	43748591	43748479	43748479	Nonsense_Mutation	C	T	p.R325*
GBM	TCGA-14-0789-01	VEGFA	ENST00000518689.1,ENST00000413642.3	chr6	43746625:43746655:43748468:43748522:43749692:43749789,	43748469	43748522	43748479	43748479	Nonsense_Mutation	C	T	p.R325*
GBM	TCGA-14-0817-01	PLCL1	ENST00000487695.2,ENST00000435320.1,ENST00000437704.2,ENST00000428675.1	chr2	198966008:198966084:198968550:198968660:199011503:199011658,	198968551	198968660	198968641	198968641	Nonsense_Mutation	G	A	p.W1029*
GBM	TCGA-14-0817-01	WFDC3	ENST00000372632.2	chr20	44405713:44405848:44417569:44417698:44420470:44420507,44416474:44416621:44417569:44417698:44420470:44420507,44416474:44416621:44417569:44417698:44418532:44418584,44404149:44404241:44417569:44417698:44418532:44418584,	44417570	44417698	44417585	44417585	Nonsense_Mutation	G	A	p.R66*
GBM	TCGA-14-0862-01	NTN1	ENST00000173229.2,ENST00000538852.1,ENST00000546090.1	chr17	8925627:8926708:9066129:9066318:9083123:9083273,	9066130	9066318	9066306	9066306	Nonsense_Mutation	A	T	p.K399*
GBM	TCGA-14-0871-01	AKTIP	ENST00000300245.4,ENST00000570004.1,ENST00000394657.7	chr16	53526604:53526665:53528049:53528157:53528250:53528349,	53528050	53528157	53528141	53528141	Nonsense_Mutation	G	A	p.Q207*
GBM	TCGA-14-0871-01	NF1	ENST00000495910.2,ENST00000358273.4,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29556852:29556992:29557277:29557400:29557859:29557943,	29557278	29557400	29557336	29557336	Nonsense_Mutation	C	T	p.Q1017*
GBM	TCGA-14-1034-02	LMO7	ENST00000447038.1	chr13	76378455:76378677:76381615:76382335:76383289:76383319,	76381616	76382335	76381854	76381854	Nonsense_Mutation	C	T	p.R479*
GBM	TCGA-14-1034-02	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149557807	149557807	Nonsense_Mutation	G	T	p.E520*
GBM	TCGA-14-1043-01	RFX4	ENST00000536722.1,ENST00000536688.1,ENST00000357881.4,ENST00000539967.2,ENST00000392842.1,ENST00000549040.1,ENST00000552773.1	chr12	107033109:107033170:107048005:107048129:107075770:107075832,	107048006	107048129	107048021	107048021	Nonsense_Mutation	T	G	p.Y78*
GBM	TCGA-14-1825-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
GBM	TCGA-14-1829-01	TAF2	ENST00000378164.2	chr8	120818522:120818641:120831585:120831746:120843916:120843971,	120831586	120831746	120831592	120831592	Nonsense_Mutation	G	C	p.S98*
GBM	TCGA-14-2554-01	MAN2B2	ENST00000505907.1,ENST00000285599.3	chr4	6590771:6590887:6594899:6595077:6596260:6596459,	6594900	6595077	6594914	6594914	Nonsense_Mutation	G	A	p.W232*
GBM	TCGA-14-3476-01	ANAPC7	ENST00000455511.3,ENST00000546720.1,ENST00000450008.2,ENST00000552170.1	chr12	110824219:110824274:110825543:110825697:110826316:110826428,	110825544	110825697	110825638	110825638	Nonsense_Mutation	G	A	p.Q228*
GBM	TCGA-15-0742-01	GAPDHS	ENST00000586334.1,ENST00000585510.1,ENST00000222286.4	chr19	36029208:36029305:36029478:36029585:36033220:36033311,	36029479	36029585	36029512	36029512	Nonsense_Mutation	C	T	p.R126*
GBM	TCGA-15-0742-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77304814:77304891:77305240:77305568:77305708:77305818,	77305241	77305568	77305567	77305567	Nonsense_Mutation	G	A	p.R133_splice
GBM	TCGA-16-1045-01	DOCK10	ENST00000422684.1,ENST00000409592.3,ENST00000258390.7	chr2	225664878:225664980:225666632:225666757:225668828:225668930,	225666633	225666757	225666723	225666723	Nonsense_Mutation	G	A	p.Q1435*
GBM	TCGA-16-1048-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56587377	56587377	Nonsense_Mutation	G	T	p.E620*
GBM	TCGA-16-1048-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784130	54784130	Nonsense_Mutation	G	A	p.Q793*
GBM	TCGA-19-1790-01	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3,ENST00000359586.6	chr10	124389803:124390006:124390476:124390797:124391370:124391391,	124390477	124390797	124390740	124390740	Nonsense_Mutation	C	T	p.R1968*
GBM	TCGA-19-2619-01	PAWR	ENST00000328827.4,ENST00000551712.1	chr12	80007354:80007389:80014855:80014987:80083508:80083810,	80014856	80014987	80014954	80014954	Nonsense_Mutation	G	A	p.Q184*
GBM	TCGA-19-2623-01	MYH11	ENST00000570785.1,ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15854396:15854515:15857652:15857748:15865425:15865569,	15857653	15857748	15857677	15857677	Nonsense_Mutation	G	A	p.Q376*
GBM	TCGA-19-2624-01	ATXN2	ENST00000550889.1,ENST00000482777.1,ENST00000535949.1	chr12	111894024:111894060:111895017:111895163:111907911:111908044,	111895018	111895163	111895056	111895056	Nonsense_Mutation	G	A	p.Q1160*
GBM	TCGA-19-2624-01	CCZ1	ENST00000537980.1,ENST00000325974.6	chr7	5958497:5958531:5959479:5959597:5963017:5963176,	5959480	5959597	5959509	5959509	Nonsense_Mutation	C	T	p.R340*
GBM	TCGA-19-2625-01	CD3E	ENST00000528600.1,ENST00000531913.1,ENST00000361763.4	chr11	118183332:118183581:118184421:118184589:118185162:118185209,	118184422	118184589	118184559	118184559	Nonsense_Mutation	C	T	p.R164*
GBM	TCGA-19-2625-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10094153:10094346:10096027:10096201:10096596:10096748,	10096028	10096201	10096087	10096087	Nonsense_Mutation	G	A	p.W722*
GBM	TCGA-19-2629-01	SSR2	ENST00000484320.2,ENST00000529008.1,ENST00000472898.1,ENST00000466905.1,ENST00000532074.1,ENST00000368311.1,ENST00000474377.1,ENST00000531790.1,ENST00000480176.1	chr1	155981600:155981678:155989803:155989958:155990678:155990694,155988060:155988159:155989803:155989958:155990678:155990694,	155989804	155989958	155989853	155989853	Nonsense_Mutation	C	A	p.E36*
GBM	TCGA-19-2629-01	NDUFS2	ENST00000392179.4,ENST00000493849.1,ENST00000480762.1,ENST00000465923.1,ENST00000367993.3	chr1	161180464:161180500:161182140:161182270:161183169:161183202,	161182141	161182270	161182256	161182256	Nonsense_Mutation	C	T	p.R368*
GBM	TCGA-19-2631-01	CEP70	ENST00000489254.1,ENST00000264982.3,ENST00000542237.1,ENST00000474781.1,ENST00000484888.1	chr3	138215751:138216169:138216872:138216952:138218951:138219022,138213854:138213918:138216872:138216952:138218951:138219022,	138216873	138216952	138216906	138216906	Nonsense_Mutation	G	A	p.Q567*
GBM	TCGA-19-4068-01	DPP10	ENST00000393147.2,ENST00000409163.1,ENST00000410059.1,ENST00000310323.8	chr2	116548656:116548755:116548862:116548932:116572368:116572563,	116548863	116548932	116548904	116548904	Nonsense_Mutation	C	T	p.R562*
GBM	TCGA-19-4068-01	MCM3	ENST00000596288.1,ENST00000476448.1,ENST00000419835.2,ENST00000229854.7	chr6	52141065:52141274:52141864:52141996:52142332:52142486,	52141865	52141996	52141940	52141940	Nonsense_Mutation	G	A	p.R364*
GBM	TCGA-19-5952-01	CLPB	ENST00000544683.1,ENST00000445069.2,ENST00000535477.1,ENST00000538039.1,ENST00000539148.1,ENST00000294053.3	chr11	72091324:72091428:72114009:72114096:72141355:72141407,	72114010	72114096	72114088	72114088	Nonsense_Mutation	G	C	p.S155*
GBM	TCGA-19-5953-01	NF1	ENST00000358273.4,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29587386:29587533:29588728:29588875:29592246:29592357,	29588729	29588875	29588751	29588751	Nonsense_Mutation	C	T	p.R1534*
GBM	TCGA-19-5954-01	IDO2	ENST00000502986.2,ENST00000389060.4,ENST00000343295.4	chr8	39821126:39821222:39836585:39836705:39840170:39840289,	39836586	39836705	39836613	39836613	Nonsense_Mutation	A	T	p.K88*
GBM	TCGA-19-5955-01	DBR1	ENST00000463982.2	chr3	137888948:137889034:137890474:137890555:137892343:137892468,137890161:137890310:137890474:137890555:137892343:137892468,	137890475	137890555	137890532	137890532	Nonsense_Mutation	G	A	p.R116*
GBM	TCGA-19-5959-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644150	70644150	Nonsense_Mutation	C	T	p.Q200*
GBM	TCGA-19-5959-01	STOX1	ENST00000399165.4	chr10	70641713:70641866:70644015:70644215:70652344:70652529,	70644016	70644215	70644150	70644150	Nonsense_Mutation	C	T	p.Q200*
GBM	TCGA-26-5132-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953730	48953730	Nonsense_Mutation	C	T	p.R445_splice
GBM	TCGA-26-5135-01	SIPA1L3	ENST00000222345.6	chr19	38519728:38519796:38571895:38573739:38579360:38579491,	38571896	38573739	38572329	38572329	Nonsense_Mutation	C	T	p.Q42*
GBM	TCGA-26-5136-01	TMEM164	ENST00000372068.2	chrX	109246322:109246384:109246728:109247392:109310574:109310624,109246342:109246406:109246728:109247392:109310574:109310624,	109246729	109247392	109247264	109247264	Nonsense_Mutation	G	T	p.E88*
GBM	TCGA-26-5136-01	TMEM164	ENST00000471255.1	chrX	109245914:109246000:109247110:109247392:109310574:109310624,	109247111	109247392	109247264	109247264	Nonsense_Mutation	G	T	p.E88*
GBM	TCGA-26-6174-01	RPL5	ENST00000470843.1	chr1	93297654:93297674:93298945:93299015:93299101:93299217,	93298946	93299015	93298990	93298990	Nonsense_Mutation	C	A	p.Y16*
GBM	TCGA-26-6174-01	SLC12A9	ENST00000462106.1,ENST00000540482.1,ENST00000354161.3,ENST00000428758.1	chr7	100450398:100450461:100451777:100452000:100454489:100454798,100450398:100450461:100451777:100452000:100456456:100456564,100450374:100450457:100451777:100452000:100454489:100454798,100450374:100450457:100451777:100452000:100452241:100452376,	100451778	100452000	100451836	100451836	Nonsense_Mutation	C	G	p.S6*
GBM	TCGA-27-1830-01	COL16A1	ENST00000271069.6,ENST00000373668.3,ENST00000373672.3	chr1	32162820:32162901:32163506:32163773:32164083:32164207,	32163507	32163773	32163660	32163660	Nonsense_Mutation	C	T	p.W168*
GBM	TCGA-27-1830-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59787207:59787422:59805629:59805741:59811918:59812041,	59805630	59805741	59805657	59805657	Nonsense_Mutation	C	T	p.Q77*
GBM	TCGA-27-1831-01	USP6	ENST00000304328.5,ENST00000575709.1,ENST00000250066.6,ENST00000574788.1	chr17	5049317:5049469:5050377:5050489:5051850:5052062,	5050378	5050489	5050405	5050405	Nonsense_Mutation	C	T	p.Q783*
GBM	TCGA-27-1833-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507363	74507363	Nonsense_Mutation	G	A	p.R418*
GBM	TCGA-27-1838-01	ABCC9	ENST00000544039.1,ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	21968696:21968827:21970120:21970241:21971083:21971185,	21970121	21970241	21970190	21970190	Nonsense_Mutation	G	A	p.Q1275*
GBM	TCGA-27-1838-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103543	168103543	Nonsense_Mutation	C	T	p.R1881*
GBM	TCGA-27-1838-01	ANGPT4	ENST00000546022.1	chr20	868960:869082:870855:871011:896548:896960,	870856	871011	870858	870858	Nonsense_Mutation	G	A	p.Q155*
GBM	TCGA-27-2521-01	FAM208B	ENST00000328090.5	chr10	5803252:5803434:5804494:5804609:5804991:5805703,	5804495	5804609	5804609	5804609	Nonsense_Mutation	G	A	p.W2430_splice
GBM	TCGA-27-2521-01	MPP7	ENST00000375719.3,ENST00000540098.1,ENST00000337532.5,ENST00000375732.1,ENST00000441595.2,ENST00000496637.2,ENST00000445954.2	chr10	28358700:28358781:28378599:28378770:28408579:28408644,	28378600	28378770	28378639	28378639	Nonsense_Mutation	G	A	p.R362*
GBM	TCGA-27-2523-01	FAM126A	ENST00000409763.1,ENST00000409923.1,ENST00000432176.2	chr7	23017887:23018067:23023562:23023664:23053543:23053693,23017887:23018067:23023562:23023664:23030679:23030758,	23023563	23023664	23023600	23023600	Nonsense_Mutation	G	T	p.S39*
GBM	TCGA-27-2524-01	PMS1	ENST00000441310.2,ENST00000421722.1,ENST00000409985.1,ENST00000450931.1,ENST00000424766.1,ENST00000374826.4,ENST00000409823.3,ENST00000447232.2,ENST00000424059.1	chr2	190656535:190656667:190660494:190660677:190670377:190670480,	190660495	190660677	190660525	190660525	Nonsense_Mutation	C	T	p.R55*
GBM	TCGA-27-2524-01	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1616833:1617151:1629697:1630051,1615912:1616245:1616833:1617151:1629697:1630054,	1616834	1617151	1616837	1616837	Nonsense_Mutation	G	A	p.R249*
GBM	TCGA-27-2528-01	ZNF683	ENST00000349618.3,ENST00000374204.1,ENST00000403843.1,ENST00000436292.1	chr1	26689516:26689645:26691022:26691717:26694083:26694138,	26691023	26691717	26691223	26691223	Nonsense_Mutation	G	A	p.R272*
GBM	TCGA-27-2528-01	WT1	ENST00000452863.3,ENST00000448076.3,ENST00000379079.2	chr11	32410587:32410725:32413526:32413610:32414211:32414301,	32413527	32413610	32413578	32413578	Nonsense_Mutation	G	A	p.R458*
GBM	TCGA-27-2528-01	WT1	ENST00000530998.1,ENST00000332351.3,ENST00000379077.3	chr11	32410587:32410725:32413517:32413610:32414211:32414301,	32413518	32413610	32413578	32413578	Nonsense_Mutation	G	A	p.R458*
GBM	TCGA-28-1753-01	FCRLA	ENST00000367957.2	chr1	161680997:161681264:161681723:161682008:161682874:161683242,161680549:161680702:161681723:161682008:161682874:161683242,161677084:161677133:161681723:161682008:161682874:161683242,	161681724	161682008	161682005	161682005	Nonsense_Mutation	C	T	p.Q284*
GBM	TCGA-28-1753-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161682005	161682005	Nonsense_Mutation	C	T	p.Q284*
GBM	TCGA-28-2501-01	MYO3A	ENST00000265944.5	chr10	26462591:26463486:26465629:26465774:26482133:26482240,	26465630	26465774	26465747	26465747	Nonsense_Mutation	C	T	p.R1471*
GBM	TCGA-28-2501-01	BBS9	ENST00000350941.3	chr7	33388679:33388782:33397466:33397607:33407378:33407474,	33397467	33397607	33397475	33397475	Nonsense_Mutation	C	T	p.R521*
GBM	TCGA-28-2502-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000523512.1,ENST00000518929.1,ENST00000432313.2,ENST00000523419.1,ENST00000522406.1	chr17	67211955:67212141:67212357:67212499:67215685:67215912,	67212358	67212499	67212489	67212489	Nonsense_Mutation	C	A	p.G181*
GBM	TCGA-28-2509-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30034845:30034985:30053341:30053489:30053803:30053972,	30053342	30053489	30053400	30053400	Nonsense_Mutation	G	A	p.Q318*
GBM	TCGA-28-2509-01	SESTD1	ENST00000428443.3	chr2	180011128:180011184:180014023:180014121:180016004:180016118,	180014024	180014121	180014058	180014058	Nonsense_Mutation	C	A	p.G183*
GBM	TCGA-28-2514-01	TRAT1	ENST00000493604.1,ENST00000478830.1	chr3	108541618:108541781:108549516:108549627:108557780:108557814,	108549517	108549627	108549621	108549621	Nonsense_Mutation	C	T	p.R38*
GBM	TCGA-28-2514-01	SYNPO2	ENST00000434046.2,ENST00000307142.4,ENST00000504178.1,ENST00000429713.2	chr4	119944625:119944736:119947781:119948593:119950999:119953008,	119947782	119948593	119948017	119948017	Nonsense_Mutation	C	T	p.Q165*
GBM	TCGA-28-5207-01	NEBL	ENST00000377122.4	chr10	21120401:21120512:21124441:21124552:21129667:21129778,	21124442	21124552	21124444	21124444	Nonsense_Mutation	C	A	p.E483*
GBM	TCGA-28-5218-01	SENP5	ENST00000323460.5	chr3	196594815:196594944:196612021:196613565:196626536:196626642,	196612022	196613565	196613120	196613120	Nonsense_Mutation	G	A	p.W356*
GBM	TCGA-28-5218-01	EPHA1	ENST00000488068.1,ENST00000275815.3	chr7	143096743:143097146:143098416:143098698:143104703:143104743,	143098417	143098698	143098437	143098437	Nonsense_Mutation	G	A	p.R138*
GBM	TCGA-28-6450-01	EPG5	ENST00000592272.1,ENST00000590884.1,ENST00000282041.5,ENST00000585906.1	chr18	43483937:43484082:43487922:43488046:43490485:43490707,	43487923	43488046	43488003	43488003	Nonsense_Mutation	G	A	p.Q1417*
GBM	TCGA-32-1970-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47887010	47887010	Nonsense_Mutation	G	A	p.R447*
GBM	TCGA-32-1986-01	SLAMF7	ENST00000368043.3,ENST00000359331.4,ENST00000495334.1	chr1	160709093:160709146:160717983:160718304:160721975:160722036,160709093:160709146:160717983:160718304:160719610:160719883,	160717984	160718304	160718192	160718192	Nonsense_Mutation	C	A	p.Y88*
GBM	TCGA-32-1991-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717636	89717636	Nonsense_Mutation	A	T	p.K221*
GBM	TCGA-32-1991-01	RUVBL2	ENST00000601968.1,ENST00000413176.2,ENST00000594017.1,ENST00000595090.1,ENST00000596247.1,ENST00000594338.1,ENST00000221413.6,ENST00000593570.1	chr19	49510274:49510404:49510558:49510625:49513032:49513128,	49510559	49510625	49510608	49510608	Nonsense_Mutation	C	T	p.R149*
GBM	TCGA-32-1991-01	ERCC6L2	ENST00000479391.2	chr9	98718195:98718295:98728843:98728996:98732857:98732938,98718195:98718295:98728843:98728996:98729740:98729907,	98728844	98728996	98728904	98728904	Nonsense_Mutation	G	T	p.G383*
GBM	TCGA-32-2494-01	CD44	ENST00000528672.1	chr11	35211561:35211612:35226058:35226187:35227658:35227790,35223225:35223334:35226058:35226187:35227658:35227790,35223225:35223334:35226058:35226187:35229651:35229711,	35226059	35226187	35226085	35226085	Nonsense_Mutation	G	T	p.E394*
GBM	TCGA-32-2495-01	ELP2	ENST00000542050.1	chr18	33739920:33739978:33740894:33740967:33744437:33744448,33739720:33739793:33740894:33740967:33744437:33744448,	33740895	33740967	33740957	33740957	Nonsense_Mutation	C	G	p.S649*
GBM	TCGA-32-2632-01	STAT1	ENST00000409465.1,ENST00000361099.3,ENST00000392322.3,ENST00000392323.2	chr2	191862581:191862733:191862942:191863034:191864351:191864423,	191862943	191863034	191862990	191862990	Nonsense_Mutation	G	A	p.Q196*
GBM	TCGA-32-2634-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039230	49039230	Nonsense_Mutation	C	T	p.Q770*
GBM	TCGA-32-2634-01	PACRG	ENST00000366888.2,ENST00000337019.3,ENST00000366889.2	chr6	163149191:163149423:163235178:163235313:163483181:163483353,	163235179	163235313	163235309	163235309	Nonsense_Mutation	G	A	p.W96*
GBM	TCGA-32-2638-01	DTNB	ENST00000405222.1,ENST00000407038.3,ENST00000481841.1,ENST00000489756.1,ENST00000356599.5,ENST00000486555.1,ENST00000407186.1	chr2	25656778:25656864:25674416:25674504:25678273:25678363,25656778:25656864:25674416:25674504:25705664:25705742,	25674417	25674504	25674485	25674485	Nonsense_Mutation	G	A	p.R397*
GBM	TCGA-32-2638-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
GBM	TCGA-32-2638-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
GBM	TCGA-32-4208-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12049221:12049400:12052611:12052747:12056212:12056375,	12052612	12052747	12052619	12052619	Nonsense_Mutation	C	G	p.Y61*
GBM	TCGA-32-4208-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938029	76938029	Nonsense_Mutation	G	A	p.R907*
GBM	TCGA-32-4209-01	TBCD	ENST00000574801.1	chr17	80828099:80828256:80842020:80842078:80863811:80863929,	80842021	80842078	80842049	80842049	Nonsense_Mutation	C	T	p.R502*
GBM	TCGA-32-4210-01	MDC1	ENST00000376406.3	chr6	30675160:30675231:30675342:30676134:30679188:30679281,	30675343	30676134	30675376	30675376	Nonsense_Mutation	C	A	p.G994*
GBM	TCGA-32-4211-01	TMTC2	ENST00000321196.3,ENST00000548305.1	chr12	83081259:83081448:83250788:83251359:83289596:83290425,	83250789	83251359	83251229	83251229	Nonsense_Mutation	C	G	p.S175*
GBM	TCGA-41-2571-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
GBM	TCGA-41-2575-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000537515.1,ENST00000444005.1	chr2	183595756:183595834:183597225:183597269:183600975:183601113,	183597226	183597269	183597246	183597246	Nonsense_Mutation	C	T	p.R276*
GBM	TCGA-41-3392-01	ZFAT	ENST00000522257.1,ENST00000520727.1,ENST00000429442.2,ENST00000377838.3,ENST00000520356.1,ENST00000523243.1,ENST00000520214.1,ENST00000522974.1,ENST00000523924.1	chr8	135621083:135621122:135622712:135622898:135649703:135649836,	135622713	135622898	135622736	135622736	Nonsense_Mutation	A	T	p.L204*
GBM	TCGA-41-6646-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654691	29654691	Nonsense_Mutation	C	T	p.Q1815*
GBM	TCGA-41-6646-01	TMEM245	ENST00000374586.3,ENST00000491854.1,ENST00000413712.2	chr9	111819470:111819602:111822633:111822732:111826756:111826847,	111822634	111822732	111822726	111822726	Nonsense_Mutation	T	A	p.K544*
GBM	TCGA-74-6578-01	NOXA1	ENST00000341349.2,ENST00000392815.2	chr9	140327656:140327715:140327904:140328059:140328201:140328316,	140327905	140328059	140327980	140327980	Nonsense_Mutation	C	T	p.R329*
GBM	TCGA-76-4926-01	RXFP1	ENST00000448688.2,ENST00000342048.5,ENST00000343542.5,ENST00000307765.5,ENST00000460056.2,ENST00000471616.1,ENST00000470033.1	chr4	159533281:159533353:159533442:159533514:159538282:159538357,	159533443	159533514	159533468	159533468	Nonsense_Mutation	C	T	p.R212*
GBM	TCGA-76-4927-01	DISC1	ENST00000366637.3	chr1	232094573:232094634:232144530:232144729:232162180:232162300,	232144531	232144729	232144583	232144583	Nonsense_Mutation	C	T	p.R731*
GBM	TCGA-76-4927-01	DISC1	ENST00000439617.2	chr1	232094573:232094634:232144530:232144795:232162180:232162300,	232144531	232144795	232144583	232144583	Nonsense_Mutation	C	T	p.R731*
GBM	TCGA-76-4929-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
GBM	TCGA-76-4929-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000382111.2,ENST00000471914.1,ENST00000433147.1,ENST00000400249.2,ENST00000490731.1,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32233079:32233141:32234670:32234831:32239080:32239198,	32234671	32234831	32234828	32234828	Nonsense_Mutation	C	T	p.R838*
GBM	TCGA-76-4931-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712007	89712007	Nonsense_Mutation	G	T	p.G209*
GBM	TCGA-76-4931-01	ASB9	ENST00000473862.1,ENST00000380488.4	chrX	15262411:15262752:15266865:15267057:15268551:15268656,	15266866	15267057	15266989	15266989	Nonsense_Mutation	C	A	p.E213*
GBM	TCGA-76-4931-01	ASB9	ENST00000546332.1,ENST00000380485.3,ENST00000380483.3	chrX	15262411:15262752:15266804:15267057:15268551:15268656,	15266805	15267057	15266989	15266989	Nonsense_Mutation	C	A	p.E213*
GBM	TCGA-76-4934-01	MAP4K3	ENST00000341681.5,ENST00000536018.1,ENST00000437545.1,ENST00000263881.3	chr2	39513992:39514105:39515261:39515421:39517432:39517475,	39515262	39515421	39515367	39515367	Nonsense_Mutation	C	A	p.G457*
GBM	TCGA-76-4935-01	CTBP2	ENST00000411419.2,ENST00000531469.1,ENST00000337195.5	chr10	126692032:126692061:126727565:126727724:126822080:126822181,126692032:126692061:126727565:126727724:126799558:126799662,	126727566	126727724	126727602	126727602	Nonsense_Mutation	T	A	p.K8*
GBM	TCGA-76-6191-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626245	82626245	Nonsense_Mutation	G	A	p.R130*
GBM	TCGA-76-6283-01	WDR90	ENST00000550902.1,ENST00000549091.1,ENST00000552728.1,ENST00000549024.1,ENST00000547407.1,ENST00000546923.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1	chr16	711731:711787:711890:712059:712219:712224,	711891	712059	711897	711897	Nonsense_Mutation	C	T	p.R1291*
GBM	TCGA-76-6657-01	CASP1	ENST00000436863.3,ENST00000533400.1,ENST00000532439.1,ENST00000527979.1,ENST00000393136.4,ENST00000598974.1,ENST00000525825.1,ENST00000593315.1,ENST00000526568.1,ENST00000529871.1	chr11	104897568:104897678:104899850:104899994:104900391:104900626,	104899851	104899994	104899923	104899923	Nonsense_Mutation	C	A	p.E312*
GBM	TCGA-76-6660-01	SMYD3	ENST00000541742.1,ENST00000391836.2,ENST00000470510.1,ENST00000490107.1,ENST00000492487.1,ENST00000464398.1,ENST00000493441.1,ENST00000388985.4,ENST00000366516.1,ENST00000366517.1	chr1	246027110:246027188:246078831:246078942:246091232:246091335,	246078832	246078942	246078867	246078867	Nonsense_Mutation	C	A	p.E260*
GBM	TCGA-76-6660-01	STIP1	ENST00000305218.4,ENST00000543847.1,ENST00000358794.5,ENST00000540501.1	chr11	63960549:63960759:63961660:63961802:63961950:63962092,	63961661	63961802	63961718	63961718	Nonsense_Mutation	C	T	p.R93*
GBM	TCGA-76-6660-01	SLC26A3	ENST00000340010.5	chr7	107414364:107414598:107415221:107415317:107416896:107416989,	107415222	107415317	107415299	107415299	Nonsense_Mutation	G	A	p.R566*
GBM	TCGA-76-6662-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
GBM	TCGA-76-6663-01	NF1	ENST00000487476.1,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29490203:29490394:29496908:29497015:29508439:29508507,	29496909	29497015	29497003	29497003	Nonsense_Mutation	C	T	p.R192*
GBM	TCGA-76-6664-01	STARD13	ENST00000255486.4,ENST00000336934.5,ENST00000399365.3	chr13	33684822:33685044:33685914:33686029:33686857:33687068,	33685915	33686029	33685935	33685935	Nonsense_Mutation	C	A	p.E863*
GBM	TCGA-76-6664-01	PNLDC1	ENST00000392167.3,ENST00000275275.5,ENST00000610273.1	chr6	160239586:160239686:160239977:160240153:160240285:160240384,	160239978	160240153	160240043	160240043	Nonsense_Mutation	G	A	p.W441*
GBM	TCGA-76-6664-01	PNPLA4	ENST00000381042.4,ENST00000537427.1,ENST00000444736.1	chrX	7866803:7868858:7870029:7870182:7880068:7880134,	7870030	7870182	7870101	7870101	Nonsense_Mutation	G	A	p.R187*
GBM	TCGA-81-5910-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123164810:123164975:123171376:123171473:123176418:123176495,	123171377	123171473	123171416	123171416	Nonsense_Mutation	C	T	p.R110*
GBM	TCGA-81-5911-01	CEP95	ENST00000553956.2,ENST00000556440.2,ENST00000553412.1	chr17	62530702:62530855:62532719:62532866:62533158:62533230,	62532720	62532866	62532771	62532771	Nonsense_Mutation	C	T	p.R708*
HNSC	TCGA-BA-5152-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1	chr12	100656041:100656187:100657274:100657671:100660697:100660833,	100657275	100657671	100657384	100657384	Nonsense_Mutation	C	A	p.E149*
HNSC	TCGA-BA-5152-01	ARHGAP26	ENST00000274498.4,ENST00000378004.3	chr5	142281499:142281604:142283104:142283234:142287268:142287369,	142283105	142283234	142283207	142283207	Nonsense_Mutation	G	T	p.E269*
HNSC	TCGA-BA-5152-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805754	22805754	Nonsense_Mutation	G	A	p.Q710*
HNSC	TCGA-BA-5152-01	RALGDS	ENST00000372062.3,ENST00000498797.1,ENST00000393160.3,ENST00000372047.3,ENST00000372050.3,ENST00000542690.1,ENST00000393157.3	chr9	135974024:135974149:135975654:135975769:135976906:135976969,	135975655	135975769	135975666	135975666	Nonsense_Mutation	G	C	p.S798*
HNSC	TCGA-BA-5152-01	PTMA	ENST00000466801.1,ENST00000412128.1,ENST00000468027.1,ENST00000409115.3,ENST00000448874.1,ENST00000410064.1,ENST00000409321.1	chr2	232576057:232576129:232576599:232576693:232577152:232577183,	232576600	232576693	232576621	232576621	Nonsense_Mutation	G	T	p.E47*
HNSC	TCGA-BA-5152-01	PTMA	ENST00000341369.7	chr2	232576057:232576129:232576596:232576693:232577152:232577183,	232576597	232576693	232576621	232576621	Nonsense_Mutation	G	T	p.E47*
HNSC	TCGA-BA-5152-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48775959:48776138:48777116:48777324:48790284:48790412,	48777117	48777324	48777319	48777319	Nonsense_Mutation	G	T	p.S1789*
HNSC	TCGA-BA-5152-01	WDR90	ENST00000549091.1,ENST00000293879.4,ENST00000546516.1	chr16	705772:705889:706301:706537:706731:706871,	706302	706537	706411	706411	Nonsense_Mutation	C	G	p.Y692*
HNSC	TCGA-BA-5152-01	G3BP1	ENST00000520177.1,ENST00000522367.1,ENST00000519832.1,ENST00000523519.1,ENST00000394123.3,ENST00000522761.1,ENST00000356245.3,ENST00000543466.1,ENST00000520006.1,ENST00000520578.1	chr5	151166163:151166276:151169883:151169965:151170449:151170587,	151169884	151169965	151169928	151169928	Nonsense_Mutation	C	G	p.S47*
HNSC	TCGA-BA-5152-01	TRAPPC2L	ENST00000567312.1	chr16	88923575:88923591:88925026:88925197:88926300:88926380,	88925027	88925197	88925146	88925146	Nonsense_Mutation	C	A	p.S12*
HNSC	TCGA-CQ-5329-01	CCDC38	ENST00000344280.3	chr12	96284609:96284708:96288766:96288924:96292162:96292243,	96288767	96288924	96288808	96288808	Nonsense_Mutation	G	T	p.S244*
HNSC	TCGA-BB-A5HY-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000463118.1,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91732000:91732140:91734991:91735077:91736606:91736736,	91734992	91735077	91735020	91735020	Nonsense_Mutation	C	T	p.R3791*
HNSC	TCGA-BB-A5HY-01	TSPYL2	ENST00000375442.4,ENST00000463525.1,ENST00000578306.1,ENST00000553557.1	chrX	53113990:53114048:53114135:53114281:53114408:53114503,	53114136	53114281	53114239	53114239	Nonsense_Mutation	G	A	p.W367*
HNSC	TCGA-CN-6998-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
HNSC	TCGA-CN-6998-01	SAFB	ENST00000588852.1,ENST00000592224.1,ENST00000586934.1,ENST00000433404.1,ENST00000292123.5	chr19	5641604:5641669:5641750:5641957:5645347:5645410,	5641751	5641957	5641946	5641946	Nonsense_Mutation	C	T	p.Q179*
HNSC	TCGA-CN-6998-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CN-6998-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CN-A6V1-01	CCDC150	ENST00000431807.2,ENST00000272831.7,ENST00000495513.1	chr2	197523515:197523584:197534556:197534600:197538964:197539072,197523515:197523584:197534556:197534600:197537068:197537161,	197534557	197534600	197534573	197534573	Nonsense_Mutation	C	G	p.S118*
HNSC	TCGA-CN-A6V1-01	SENP5	ENST00000419026.1,ENST00000323460.5	chr3	196630403:196630481:196650284:196650422:196654666:196654750,	196650285	196650422	196650379	196650379	Nonsense_Mutation	C	G	p.S660*
HNSC	TCGA-CN-A6V1-01	ASIC1	ENST00000552438.1,ENST00000453327.3,ENST00000228468.4,ENST00000447966.2,ENST00000550558.1	chr12	50472706:50472763:50473684:50473838:50474280:50474372,	50473685	50473838	50473825	50473825	Nonsense_Mutation	G	T	p.E398*
HNSC	TCGA-CN-A6V1-01	TRPM7	ENST00000313478.7,ENST00000560955.1,ENST00000560284.1	chr15	50886625:50886810:50888451:50888578:50891318:50891443,	50888452	50888578	50888513	50888513	Nonsense_Mutation	G	A	p.Q1077*
HNSC	TCGA-CN-A6V1-01	DMGDH	ENST00000540686.1,ENST00000517853.1	chr5	78340126:78340375:78359435:78359610:78365342:78365449,78329061:78329231:78359435:78359610:78365342:78365449,	78359436	78359610	78359574	78359574	Nonsense_Mutation	C	T	p.W46*
HNSC	TCGA-CN-A6V1-01	ECD	ENST00000453402.1,ENST00000430082.2,ENST00000372979.4	chr10	74912103:74912179:74914013:74914206:74916032:74916211,	74914014	74914206	74914175	74914175	Nonsense_Mutation	G	A	p.R208*
HNSC	TCGA-BB-A6UM-01	GEMIN5	ENST00000285873.7	chr5	154311017:154311137:154311658:154311810:154315400:154315582,	154311659	154311810	154311746	154311746	Nonsense_Mutation	G	A	p.R192*
HNSC	TCGA-CN-5361-01	CFHR5	ENST00000256785.4,ENST00000367414.5	chr1	196965151:196965331:196967257:196967434:196971611:196971794,	196967258	196967434	196967390	196967390	Nonsense_Mutation	C	G	p.S392*
HNSC	TCGA-CN-5361-01	COL7A1	ENST00000454817.1,ENST00000328333.8	chr3	48625714:48625837:48626074:48626221:48626302:48626428,	48626075	48626221	48626135	48626135	Nonsense_Mutation	G	A	p.R843*
HNSC	TCGA-BB-4223-01	EFEMP2	ENST00000533347.1	chr11	65638006:65638129:65638627:65638880:65639440:65639489,	65638628	65638880	65638808	65638808	Nonsense_Mutation	C	A	p.E63*
HNSC	TCGA-BB-4223-01	EFEMP2	ENST00000531972.1,ENST00000307998.6,ENST00000527378.1,ENST00000528176.1,ENST00000526624.1	chr11	65638006:65638129:65638627:65638834:65639440:65639489,	65638628	65638834	65638808	65638808	Nonsense_Mutation	C	A	p.E63*
HNSC	TCGA-BB-4223-01	GMEB1	ENST00000373816.1,ENST00000480454.1,ENST00000294409.2,ENST00000361872.4	chr1	29023438:29023596:29028949:29029081:29030703:29030841,	29028950	29029081	29029013	29029013	Nonsense_Mutation	C	G	p.S221*
HNSC	TCGA-BB-4223-01	ITGB6	ENST00000409872.1,ENST00000283249.2,ENST00000409967.2	chr2	161051879:161052126:161052726:161052931:161056513:161056534,161051879:161052126:161052726:161052931:161055689:161055769,	161052727	161052931	161052754	161052754	Nonsense_Mutation	G	A	p.Q107*
HNSC	TCGA-CV-7090-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-7090-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-7090-01	METTL15	ENST00000407364.3,ENST00000451385.2	chr11	28311752:28311944:28318299:28318478:28351942:28352176,	28318300	28318478	28318421	28318421	Nonsense_Mutation	C	T	p.Q241*
HNSC	TCGA-CV-7090-01	METTL15	ENST00000406787.3	chr11	28311752:28311944:28318343:28318478:28351942:28352176,	28318344	28318478	28318421	28318421	Nonsense_Mutation	C	T	p.Q241*
HNSC	TCGA-CV-7090-01	FGB	ENST00000509493.1,ENST00000302068.4,ENST00000502545.1	chr4	155488744:155488972:155489532:155489646:155490333:155490459,	155489533	155489646	155489613	155489613	Nonsense_Mutation	A	T	p.R267*
HNSC	TCGA-CQ-7069-01	STK33	ENST00000396672.1,ENST00000315204.1,ENST00000396673.1,ENST00000457885.2,ENST00000534493.1,ENST00000447869.1,ENST00000418597.1,ENST00000422559.2	chr11	8486255:8486369:8494709:8494823:8496227:8496302,	8494710	8494823	8494819	8494819	Nonsense_Mutation	G	C	p.S77*
HNSC	TCGA-CV-A6JY-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82834812	82834812	Nonsense_Mutation	C	A	p.S1997*
HNSC	TCGA-MZ-A7D7-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37051880:37051988:37052467:37052668:37057287:37057434,	37052468	37052668	37052593	37052593	Nonsense_Mutation	C	G	p.Y2396*
HNSC	TCGA-MZ-A7D7-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202447	56202447	Nonsense_Mutation	C	A	p.G1658*
HNSC	TCGA-MZ-A7D7-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708996	91708996	Nonsense_Mutation	C	T	p.Q2529*
HNSC	TCGA-MZ-A7D7-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3,ENST00000427704.2,ENST00000440869.2	chr6	144086397:144086935:144093394:144093594:144095195:144095352,	144093395	144093594	144093548	144093548	Nonsense_Mutation	C	A	p.Y451*
HNSC	TCGA-MZ-A7D7-01	ZNF415	ENST00000500065.4	chr19	53613129:53613161:53619565:53619686:53625914:53625996,53613129:53613161:53619565:53619686:53625656:53625865,	53619566	53619686	53619585	53619585	Nonsense_Mutation	G	A	p.Q19*
HNSC	TCGA-MZ-A7D7-01	NINL	ENST00000422516.1,ENST00000278886.6	chr20	25470510:25470621:25471986:25472161:25477298:25477439,	25471987	25472161	25472025	25472025	Nonsense_Mutation	C	A	p.E483*
HNSC	TCGA-CQ-5333-01	COL17A1	ENST00000353479.5	chr10	105799211:105799277:105799365:105799398:105799730:105799757,	105799366	105799398	105799374	105799374	Nonsense_Mutation	G	C	p.S938*
HNSC	TCGA-CQ-5333-01	ZDHHC15	ENST00000373361.3,ENST00000373367.3,ENST00000541184.1	chrX	74651285:74651355:74670636:74670757:74698725:74698820,	74670637	74670757	74670646	74670646	Nonsense_Mutation	C	A	p.G115*
HNSC	TCGA-CV-7250-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176662821:176662946:176665237:176665508:176666756:176666866,	176665238	176665508	176665392	176665392	Nonsense_Mutation	C	A	p.S1359*
HNSC	TCGA-CV-7250-01	CERS2	ENST00000361419.5,ENST00000271688.6	chr1	150940870:150940988:150941393:150941607:150947094:150947302,	150941394	150941607	150941485	150941485	Nonsense_Mutation	G	A	p.R28*
HNSC	TCGA-CV-7250-01	CERS2	ENST00000368954.5	chr1	150940870:150940988:150941393:150941567:150947094:150947302,	150941394	150941567	150941485	150941485	Nonsense_Mutation	G	A	p.R28*
HNSC	TCGA-CV-7250-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101525896:101525970:101535638:101535845:101540247:101541667,	101535639	101535845	101535734	101535734	Nonsense_Mutation	C	T	p.Q340*
HNSC	TCGA-CV-7250-01	CEP250	ENST00000397527.1	chr20	34067800:34067970:34078462:34078630:34079037:34079172,	34078463	34078630	34078580	34078580	Nonsense_Mutation	C	T	p.Q902*
HNSC	TCGA-CV-7250-01	SULT1B1	ENST00000510821.1,ENST00000310613.3	chr4	70615438:70615536:70620387:70620516:70620787:70620919,	70620388	70620516	70620403	70620403	Nonsense_Mutation	C	A	p.G88*
HNSC	TCGA-CV-7250-01	TMCC2	ENST00000358024.3,ENST00000545499.1,ENST00000495538.1	chr1	205210641:205211172:205238077:205239012:205240247:205240383,	205238078	205239012	205238351	205238351	Nonsense_Mutation	C	T	p.Q341*
HNSC	TCGA-CV-7438-01	BLNK	ENST00000371176.2,ENST00000224337.5	chr10	97951462:97951848:97956663:97956819:97959830:97959914,	97956664	97956819	97956812	97956812	Nonsense_Mutation	G	C	p.S368*
HNSC	TCGA-CV-7438-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-CV-7438-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000502304.1,ENST00000506507.1,ENST00000509195.1,ENST00000347300.2,ENST00000512157.1,ENST00000348417.2	chr3	129170756:129170841:129180070:129180147:129182402:129182465,129177441:129177520:129180070:129180147:129182402:129182465,	129180071	129180147	129180117	129180117	Nonsense_Mutation	C	T	p.Q158*
HNSC	TCGA-CV-7438-01	TPD52	ENST00000518517.1,ENST00000524194.1,ENST00000379097.3,ENST00000379096.5,ENST00000523319.2,ENST00000521354.1,ENST00000523193.1	chr8	80950451:80950470:80954854:80954903:80963761:80963863,	80954855	80954903	80954859	80954859	Nonsense_Mutation	A	T	p.L144*
HNSC	TCGA-CV-A6JM-01	EPG5	ENST00000592272.1,ENST00000590884.1,ENST00000587884.1,ENST00000282041.5,ENST00000585906.1	chr18	43467815:43467872:43469762:43469905:43479368:43479531,	43469763	43469905	43469794	43469794	Nonsense_Mutation	C	A	p.E1641*
HNSC	TCGA-CV-A6JM-01	AMD1	ENST00000368877.5	chr6	111208707:111208794:111210059:111210186:111211456:111211559,111195987:111196418:111210059:111210186:111211456:111211559,	111210060	111210186	111210179	111210179	Nonsense_Mutation	C	G	p.S106*
HNSC	TCGA-CR-6472-01	SERPINA10	ENST00000261994.4	chr14	94754622:94754896:94756212:94756980:94759525:94759608,	94756213	94756980	94756786	94756786	Nonsense_Mutation	C	A	p.E89*
HNSC	TCGA-CR-6472-01	TARBP1	ENST00000040877.1	chr1	234541648:234541845:234546190:234546277:234553829:234553979,	234546191	234546277	234546228	234546228	Nonsense_Mutation	G	C	p.S1252*
HNSC	TCGA-CR-6472-01	IFNGR2	ENST00000405436.1,ENST00000381995.1	chr21	34783750:34783881:34787194:34787327:34793786:34793992,34783146:34783198:34787194:34787327:34793786:34793992,	34787195	34787327	34787221	34787221	Nonsense_Mutation	C	T	p.Q34*
HNSC	TCGA-CR-6472-01	RADIL	ENST00000473130.1	chr7	4856869:4856982:4862024:4862181:4871771:4871809,	4862025	4862181	4862113	4862113	Nonsense_Mutation	C	T	p.W509*
HNSC	TCGA-CR-6472-01	RADIL	ENST00000538469.1,ENST00000484211.1,ENST00000445392.1,ENST00000399583.3	chr7	4856869:4856982:4862024:4862185:4871771:4871809,	4862025	4862185	4862113	4862113	Nonsense_Mutation	C	T	p.W509*
HNSC	TCGA-CR-6472-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170626882	170626882	Nonsense_Mutation	C	G	p.S135*
HNSC	TCGA-CR-6472-01	ARL1	ENST00000536227.1,ENST00000551828.1,ENST00000551092.1,ENST00000551671.1,ENST00000261636.8,ENST00000539055.1	chr12	101790317:101790355:101794839:101794951:101796642:101796724,	101794840	101794951	101794928	101794928	Nonsense_Mutation	G	C	p.S83*
HNSC	TCGA-CR-6472-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070880	197070880	Nonsense_Mutation	G	A	p.Q2501*
HNSC	TCGA-CR-6472-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525644	75525644	Nonsense_Mutation	G	T	p.E485*
HNSC	TCGA-CR-6472-01	SGTA	ENST00000221566.2	chr19	2757690:2757780:2759254:2759292:2761457:2761520,	2759255	2759292	2759262	2759262	Nonsense_Mutation	G	A	p.Q244*
HNSC	TCGA-CR-6472-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63487851	63487851	Nonsense_Mutation	C	A	p.S626*
HNSC	TCGA-CR-6472-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63487851	63487851	Nonsense_Mutation	C	A	p.S626*
HNSC	TCGA-CR-6472-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000571505.1,ENST00000300036.5,ENST00000396324.3	chr16	15892516:15892544:15917111:15917268:15931764:15932126,	15917112	15917268	15917115	15917115	Nonsense_Mutation	G	A	p.Q167*
HNSC	TCGA-QK-AA3K-01	ZNF365	ENST00000395255.3,ENST00000410046.3	chr10	64134111:64134217:64135939:64136695:64148154:64148335,	64135940	64136695	64136451	64136451	Nonsense_Mutation	C	T	p.R167*
HNSC	TCGA-UF-A7JH-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117227792:117227887:117230406:117230493:117231987:117232711,	117230407	117230493	117230489	117230489	Nonsense_Mutation	G	T	p.E588*
HNSC	TCGA-UF-A7JH-01	CHEK1	ENST00000524737.1,ENST00000427383.2,ENST00000534070.1,ENST00000528276.1,ENST00000532449.1,ENST00000428830.2,ENST00000438015.1	chr11	125513985:125514163:125514406:125514538:125523640:125523742,	125514407	125514538	125514440	125514440	Nonsense_Mutation	C	T	p.R379*
HNSC	TCGA-CQ-6219-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44216366:44216513:44217113:44217320:44217411:44217571,	44217114	44217320	44217204	44217204	Nonsense_Mutation	C	T	p.Q80*
HNSC	TCGA-CQ-6219-01	TM9SF4	ENST00000398022.2,ENST00000217315.5	chr20	30720815:30720929:30723876:30723976:30729343:30729409,30720815:30720929:30723876:30723976:30729299:30729468,	30723877	30723976	30723921	30723921	Nonsense_Mutation	C	G	p.Y41*
HNSC	TCGA-CV-5966-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131498	202131498	Nonsense_Mutation	C	T	p.Q156*
HNSC	TCGA-CV-5966-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131498	202131498	Nonsense_Mutation	C	T	p.Q156*
HNSC	TCGA-BA-A6DJ-01	AGTRAP	ENST00000376629.4,ENST00000314340.5	chr1	11805859:11805894:11807496:11807602:11808471:11808646,	11807497	11807602	11807587	11807587	Nonsense_Mutation	C	T	p.R40*
HNSC	TCGA-BA-A6DJ-01	NAP1L1	ENST00000535020.2,ENST00000547529.2,ENST00000547773.1,ENST00000393263.3,ENST00000544816.1,ENST00000549596.1,ENST00000551524.1,ENST00000548273.1,ENST00000548044.1,ENST00000551992.1,ENST00000261182.8,ENST00000552056.1	chr12	76449812:76449938:76453577:76453658:76453917:76454059,76449904:76449941:76453577:76453658:76453917:76454045,	76453578	76453658	76453586	76453586	Nonsense_Mutation	C	A	p.E141*
HNSC	TCGA-BA-A6DJ-01	NAP1L1	ENST00000547704.1	chr12	76449904:76449941:76453556:76453658:76453917:76454045,	76453557	76453658	76453586	76453586	Nonsense_Mutation	C	A	p.E141*
HNSC	TCGA-BA-A6DJ-01	SAFB	ENST00000454510.1,ENST00000589863.1,ENST00000538656.1,ENST00000588852.1,ENST00000592224.1,ENST00000433404.1,ENST00000292123.5	chr19	5664139:5664170:5664407:5664450:5667056:5667175,	5664408	5664450	5664425	5664425	Nonsense_Mutation	C	G	p.S770*
HNSC	TCGA-BA-A6DJ-01	TUBD1	ENST00000591548.1,ENST00000588009.1,ENST00000340993.6	chr17	57943969:57944110:57955463:57955695:57958254:57958471,	57955464	57955695	57955640	57955640	Nonsense_Mutation	G	C	p.S198*
HNSC	TCGA-CN-4736-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
HNSC	TCGA-CN-4736-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
HNSC	TCGA-CN-4736-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36899181	36899181	Nonsense_Mutation	G	A	p.Q84*
HNSC	TCGA-DQ-5631-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000418559.1	chr2	183608384:183608439:183616384:183616512:183616798:183616915,	183616385	183616512	183616459	183616459	Nonsense_Mutation	C	T	p.Q461*
HNSC	TCGA-DQ-5631-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574021	7574021	Nonsense_Mutation	C	A	p.E336*
HNSC	TCGA-DQ-5631-01	ARSF	ENST00000537104.1,ENST00000381127.1,ENST00000359361.2	chrX	2994588:2994710:2998931:2999054:3002283:3002707,	2998932	2999054	2998964	2998964	Nonsense_Mutation	C	T	p.Q106*
HNSC	TCGA-DQ-5631-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19551978:19552109:19553208:19553386:19553942:19554082,	19553209	19553386	19553369	19553369	Nonsense_Mutation	C	G	p.S737*
HNSC	TCGA-DQ-5631-01	WDR88	ENST00000355868.3,ENST00000361680.2	chr19	33642086:33642216:33647260:33647448:33651319:33651402,	33647261	33647448	33647373	33647373	Nonsense_Mutation	C	T	p.R308*
HNSC	TCGA-DQ-5631-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542861	187542861	Nonsense_Mutation	G	A	p.R1627*
HNSC	TCGA-CV-5440-01	ATXN3	ENST00000556315.1,ENST00000554592.1	chr14	92562436:92562481:92563017:92563182:92572872:92572906,92560089:92560175:92563017:92563182:92572872:92572906,92562436:92562478:92563017:92563182:92572872:92572906,	92563018	92563182	92563179	92563179	Nonsense_Mutation	C	A	p.E10*
HNSC	TCGA-CV-5440-01	CSPP1	ENST00000521324.1,ENST00000521168.1,ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68089914:68089961:68092097:68092161:68102884:68102994,	68092098	68092161	68092140	68092140	Nonsense_Mutation	G	T	p.E1062*
HNSC	TCGA-CV-5440-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350644	89350644	Nonsense_Mutation	G	C	p.S769*
HNSC	TCGA-BA-A6DE-01	DRC1	ENST00000288710.2	chr2	26667089:26667224:26667583:26667816:26671558:26671671,	26667584	26667816	26667762	26667762	Nonsense_Mutation	C	T	p.Q448*
HNSC	TCGA-BA-A6DE-01	SH3RF2	ENST00000511217.1	chr5	145439428:145439787:145441988:145442297:145458022:145461354,	145441989	145442297	145442148	145442148	Nonsense_Mutation	C	T	p.R692*
HNSC	TCGA-UF-A71E-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044179	108044179	Nonsense_Mutation	G	T	p.S511*
HNSC	TCGA-MT-A67D-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000465816.2,ENST00000467432.1,ENST00000356327.5,ENST00000342215.6,ENST00000446289.1	chr3	171330096:171330222:171338175:171338310:171360629:171360679,	171338176	171338310	171338283	171338283	Nonsense_Mutation	G	T	p.S836*
HNSC	TCGA-MT-A67D-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724466	112724466	Nonsense_Mutation	C	A	p.S117*
HNSC	TCGA-CN-4727-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176700672:176700785:176707565:176707835:176709465:176709582,	176707566	176707835	176707725	176707725	Nonsense_Mutation	G	T	p.G1928*
HNSC	TCGA-CN-4727-01	ZC3H14	ENST00000359301.3,ENST00000556000.1,ENST00000336693.4,ENST00000556945.1,ENST00000555755.1,ENST00000251038.5,ENST00000557607.1,ENST00000393514.5,ENST00000302216.8	chr14	89038921:89039351:89041036:89041197:89042183:89042284,	89041037	89041197	89041109	89041109	Nonsense_Mutation	G	T	p.G312*
HNSC	TCGA-CN-4727-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
HNSC	TCGA-CN-4727-01	ATRNL1	ENST00000423111.2,ENST00000355044.3,ENST00000303745.7	chr10	117308967:117309046:117486757:117486865:117607387:117607502,	117486758	117486865	117486770	117486770	Nonsense_Mutation	G	T	p.E1270*
HNSC	TCGA-CN-4727-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54656146:54656250:54669114:54669216:54708206:54708321,54656186:54656250:54669114:54669216:54682177:54682248,	54669115	54669216	54669197	54669197	Nonsense_Mutation	C	A	p.E381*
HNSC	TCGA-CN-4727-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638275	176638275	Nonsense_Mutation	G	T	p.G959*
HNSC	TCGA-UF-A7JV-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509636	106509636	Nonsense_Mutation	C	T	p.R544*
HNSC	TCGA-UF-A7JV-01	BEND7	ENST00000396900.2,ENST00000341083.3	chr10	13534691:13534876:13538765:13538888:13541738:13542080,13534691:13534876:13538765:13538888:13541777:13542080,	13538766	13538888	13538828	13538828	Nonsense_Mutation	G	C	p.S118*
HNSC	TCGA-UF-A7JT-01	TMEM131	ENST00000425805.2,ENST00000418629.2,ENST00000489507.1,ENST00000186436.5	chr2	98525120:98525161:98543888:98543950:98611938:98611995,	98543889	98543950	98543938	98543938	Nonsense_Mutation	G	C	p.S67*
HNSC	TCGA-CQ-A4C7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577025	7577025	Nonsense_Mutation	T	A	p.K305*
HNSC	TCGA-CQ-A4C7-01	DNMT3L	ENST00000418993.1,ENST00000270172.3	chr21	45679519:45679594:45680677:45680722:45681036:45681149,	45680678	45680722	45680690	45680690	Nonsense_Mutation	G	A	p.R47*
HNSC	TCGA-CQ-A4C7-01	GMNN	ENST00000230056.3,ENST00000378054.2,ENST00000356509.3	chr6	24784314:24784397:24784671:24784782:24785865:24785935,	24784672	24784782	24784759	24784759	Nonsense_Mutation	C	T	p.Q149*
HNSC	TCGA-P3-A6T3-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
HNSC	TCGA-P3-A6T3-01	DHX15	ENST00000336812.4	chr4	24572276:24572470:24577865:24578301:24585945:24586160,	24577866	24578301	24578255	24578255	Nonsense_Mutation	G	A	p.R40*
HNSC	TCGA-P3-A6T3-01	PALLD	ENST00000505667.1,ENST00000261509.6	chr4	169846105:169846229:169846383:169846429:169847363:169847423,	169846384	169846429	169846389	169846389	Nonsense_Mutation	C	T	p.R1105*
HNSC	TCGA-P3-A6T3-01	ABHD12	ENST00000339157.5,ENST00000376542.3	chr20	25282854:25282982:25284185:25284264:25287468:25287551,	25284186	25284264	25284224	25284224	Nonsense_Mutation	C	A	p.E331*
HNSC	TCGA-CN-5364-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
HNSC	TCGA-CN-5364-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247786	149247786	Nonsense_Mutation	C	T	p.R1296*
HNSC	TCGA-CN-5364-01	BCAR3	ENST00000260502.6,ENST00000370244.1,ENST00000539242.1,ENST00000370243.1,ENST00000370247.3	chr1	94033296:94033408:94037226:94037398:94041570:94041686,	94037227	94037398	94037258	94037258	Nonsense_Mutation	G	C	p.S648*
HNSC	TCGA-CV-6945-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100934449:100934596:100955662:100955776:100957028:100957267,	100955663	100955776	100955674	100955674	Nonsense_Mutation	G	T	p.E360*
HNSC	TCGA-F7-A50J-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000265636.5,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68321612:68321725:68326033:68326147:68331770:68331875,	68326034	68326147	68326137	68326137	Nonsense_Mutation	C	T	p.R279*
HNSC	TCGA-F7-A50J-01	RBBP7	ENST00000404022.1,ENST00000380087.2	chrX	16881079:16881223:16887198:16887343:16888160:16888467,	16887199	16887343	16887242	16887242	Nonsense_Mutation	G	A	p.Q40*
HNSC	TCGA-F7-A50J-01	RBBP7	ENST00000468092.1	chrX	16881079:16881223:16887198:16887377:16888160:16888467,	16887199	16887377	16887242	16887242	Nonsense_Mutation	G	A	p.Q40*
HNSC	TCGA-CQ-A4CD-01	DOCK7	ENST00000340370.5	chr1	63009326:63009416:63018402:63018572:63021495:63021605,	63018403	63018572	63018486	63018486	Nonsense_Mutation	G	A	p.R895*
HNSC	TCGA-CQ-A4CD-01	WT1	ENST00000452863.3,ENST00000530998.1,ENST00000332351.3,ENST00000379077.3,ENST00000448076.3,ENST00000379079.2	chr11	32414211:32414301:32417802:32417953:32421493:32421590,	32417803	32417953	32417947	32417947	Nonsense_Mutation	G	A	p.R369*
HNSC	TCGA-CQ-A4CD-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233709078:233709284:233710441:233710596:233712057:233712209,	233710442	233710596	233710512	233710512	Nonsense_Mutation	C	T	p.Q1148*
HNSC	TCGA-CQ-A4CD-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72008314:72008480:72008613:72008718:72008985:72009096,	72008614	72008718	72008698	72008698	Nonsense_Mutation	G	T	p.S1759*
HNSC	TCGA-CQ-A4CD-01	ICA1L	ENST00000438804.1,ENST00000419460.1,ENST00000450143.1,ENST00000435143.1,ENST00000358299.2,ENST00000425178.1,ENST00000392237.2	chr2	203684609:203684622:203686080:203686204:203690417:203690471,	203686081	203686204	203686198	203686198	Nonsense_Mutation	G	C	p.S81*
HNSC	TCGA-CQ-A4CD-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971153	21971153	Nonsense_Mutation	C	A	p.E69*
HNSC	TCGA-CQ-A4CD-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971153	21971153	Nonsense_Mutation	C	A	p.E69*
HNSC	TCGA-CR-7383-01	ST18	ENST00000521824.1,ENST00000276480.7,ENST00000522251.1,ENST00000521582.1	chr8	53055489:53055605:53062291:53062537:53071457:53071669,	53062292	53062537	53062328	53062328	Nonsense_Mutation	A	T	p.Y672*
HNSC	TCGA-CR-7383-01	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000529725.1,ENST00000394227.3,ENST00000531339.1,ENST00000527525.1	chr11	65417227:65417336:65417420:65417522:65417608:65417663,	65417421	65417522	65417519	65417519	Nonsense_Mutation	G	T	p.E949*
HNSC	TCGA-CR-7383-01	MYCT1	ENST00000532295.1	chr6	153019095:153019233:153042876:153043388:153043897:153044419,	153042877	153043388	153043080	153043080	Nonsense_Mutation	C	T	p.R134*
HNSC	TCGA-CN-6997-01	CCDC180	ENST00000411667.2,ENST00000460482.2,ENST00000529487.1,ENST00000375202.2,ENST00000494917.2,ENST00000357054.1,ENST00000395220.1	chr9	100088835:100088951:100090301:100090428:100092435:100092475,	100090302	100090428	100090306	100090306	Nonsense_Mutation	G	T	p.E600*
HNSC	TCGA-BA-A6DA-01	ST8SIA1	ENST00000541868.1,ENST00000396037.4	chr12	22401939:22402032:22440082:22440227:22486930:22487097,22408213:22408323:22440082:22440227:22486930:22487097,	22440083	22440227	22440119	22440119	Nonsense_Mutation	G	T	p.S9*
HNSC	TCGA-BA-A6DA-01	ELMO1	ENST00000464262.2	chr7	36909997:36910080:36917614:36917722:36927164:36927277,36909997:36910080:36917614:36917722:36934458:36934622,	36917615	36917722	36917673	36917673	Nonsense_Mutation	G	T	p.Y588*
HNSC	TCGA-BA-A6DA-01	ADAMTS12	ENST00000515401.1,ENST00000352040.3	chr5	33751508:33751653:33881223:33881585:33891834:33892046,	33881224	33881585	33881451	33881451	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-BA-A6DA-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832871	61832871	Nonsense_Mutation	C	A	p.E2590*
HNSC	TCGA-BA-A6DA-01	TLN2	ENST00000489129.1,ENST00000306829.6,ENST00000494733.1,ENST00000561311.1	chr15	63073338:63073440:63075969:63076089:63084839:63084986,	63075970	63076089	63076078	63076078	Nonsense_Mutation	G	T	p.E1909*
HNSC	TCGA-BA-A6DA-01	CDCA8	ENST00000327331.2,ENST00000373055.1	chr1	38158576:38158705:38161581:38161622:38164576:38164649,	38161582	38161622	38161590	38161590	Nonsense_Mutation	G	T	p.G78*
HNSC	TCGA-BA-A6DA-01	CDK5RAP2	ENST00000359309.3	chr9	123202067:123202250:123210172:123210404:123215733:123216151,	123210173	123210404	123210239	123210239	Nonsense_Mutation	G	A	p.Q987*
HNSC	TCGA-BA-5559-01	IL9R	ENST00000540897.1,ENST00000424344.3,ENST00000369423.2	chrX	155231072:155231173:155232546:155232684:155233113:155233225,	155232547	155232684	155232635	155232635	Nonsense_Mutation	C	A	p.C10*
HNSC	TCGA-CX-A4AQ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577082	7577082	Nonsense_Mutation	C	A	p.E286*
HNSC	TCGA-CX-A4AQ-01	PDE4DIP	ENST00000530062.1	chr1	144854164:144854211:144854517:144854656:144855739:144855883,144852393:144852499:144854517:144854656:144855739:144855883,	144854518	144854656	144854605	144854605	Nonsense_Mutation	G	A	p.Q2425*
HNSC	TCGA-D6-A6EQ-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61414210	61414210	Nonsense_Mutation	G	A	p.Q192*
HNSC	TCGA-CQ-5334-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655479	67655479	Nonsense_Mutation	C	T	p.R448*
HNSC	TCGA-CQ-5334-01	PHGDH	ENST00000369407.3,ENST00000369409.4	chr1	120279736:120279889:120283008:120283141:120284389:120284520,	120283009	120283141	120283059	120283059	Nonsense_Mutation	G	A	p.W298*
HNSC	TCGA-CQ-5334-01	PHGDH	ENST00000369407.3,ENST00000369409.4	chr1	120279736:120279889:120283008:120283141:120284389:120284520,	120283009	120283141	120283058	120283058	Nonsense_Mutation	G	A	p.W298*
HNSC	TCGA-CV-A45P-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-A45P-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-A468-01	SYK	ENST00000375754.4,ENST00000375751.4,ENST00000375746.1,ENST00000375747.1	chr9	93641045:93641235:93650030:93650171:93650796:93650909,	93650031	93650171	93650034	93650034	Nonsense_Mutation	C	T	p.Q529*
HNSC	TCGA-CV-A468-01	CAPRIN2	ENST00000308433.5,ENST00000454014.2,ENST00000298892.5,ENST00000548676.1,ENST00000417045.1,ENST00000537108.1,ENST00000251071.5,ENST00000395805.2,ENST00000433722.2,ENST00000537553.1	chr12	30877303:30877385:30878899:30879022:30881581:30882259,	30878900	30879022	30878929	30878929	Nonsense_Mutation	G	A	p.Q626*
HNSC	TCGA-CV-A468-01	DLG4	ENST00000491753.1	chr17	7095211:7095321:7096263:7096436:7096801:7096876,7094585:7094677:7096263:7096436:7096801:7096876,	7096264	7096436	7096290	7096290	Nonsense_Mutation	G	A	p.Q657*
HNSC	TCGA-CV-A468-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
HNSC	TCGA-CV-A468-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176662821:176662946:176665237:176665508:176666756:176666866,	176665238	176665508	176665274	176665274	Nonsense_Mutation	C	T	p.R1320*
HNSC	TCGA-CV-A468-01	DARS	ENST00000537273.1	chr2	136718965:136719068:136736843:136736936:136740966:136741017,136718965:136719068:136736843:136736936:136742972:136743062,	136736844	136736936	136736889	136736889	Nonsense_Mutation	C	A	p.E58*
HNSC	TCGA-CV-A468-01	MEF2C	ENST00000340208.5	chr5	88056839:88056942:88057085:88057145:88100414:88100618,	88057086	88057145	88057136	88057136	Nonsense_Mutation	T	A	p.K90*
HNSC	TCGA-CV-A468-01	MEF2C	ENST00000514028.1,ENST00000504921.2,ENST00000437473.2,ENST00000508569.1,ENST00000506554.1,ENST00000510942.1,ENST00000514015.1	chr5	88047682:88047860:88057001:88057145:88100414:88100618,	88057002	88057145	88057136	88057136	Nonsense_Mutation	T	A	p.K90*
HNSC	TCGA-CV-A468-01	TPRA1	ENST00000489960.1,ENST00000355552.3,ENST00000490290.1,ENST00000393400.2,ENST00000469111.1,ENST00000296210.7,ENST00000483868.1,ENST00000490643.1	chr3	127295832:127295919:127298582:127298715:127298864:127299006,	127298583	127298715	127298653	127298653	Nonsense_Mutation	C	T	p.W63*
HNSC	TCGA-CR-7367-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86416016	86416016	Nonsense_Mutation	G	A	p.W303*
HNSC	TCGA-CR-7367-01	WDR5	ENST00000358625.3,ENST00000425041.1	chr9	137013409:137013465:137017104:137017151:137019587:137019663,	137017105	137017151	137017113	137017113	Nonsense_Mutation	G	A	p.W198*
HNSC	TCGA-UF-A7JK-01	PANK2	ENST00000495692.1,ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3893104:3893281:3897573:3897697:3899317:3899436,	3897574	3897697	3897632	3897632	Nonsense_Mutation	A	T	p.R200*
HNSC	TCGA-UF-A7JK-01	IL4R	ENST00000566117.1,ENST00000563002.1,ENST00000395762.2,ENST00000449195.1,ENST00000543915.2,ENST00000170630.2,ENST00000566318.1,ENST00000563787.1,ENST00000561946.1	chr16	27351506:27351594:27353441:27353580:27356189:27356341,	27353442	27353580	27353504	27353504	Nonsense_Mutation	G	T	p.E45*
HNSC	TCGA-CV-7103-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187517826	187517826	Nonsense_Mutation	C	A	p.E4290*
HNSC	TCGA-CV-5970-01	EFCAB6	ENST00000262726.7,ENST00000396231.2	chr22	44073875:44074043:44079626:44079735:44083350:44083461,	44079627	44079735	44079707	44079707	Nonsense_Mutation	C	A	p.E391*
HNSC	TCGA-CV-5970-01	DMGDH	ENST00000380311.4,ENST00000255189.3,ENST00000523732.1,ENST00000518477.1	chr5	78329061:78329231:78338105:78338304:78340126:78340375,	78338106	78338304	78338269	78338269	Nonsense_Mutation	G	A	p.R344*
HNSC	TCGA-CV-5970-01	COPB1	ENST00000249923.3,ENST00000439561.2	chr11	14487827:14487972:14490226:14490406:14490881:14491109,	14490227	14490406	14490304	14490304	Nonsense_Mutation	G	A	p.Q690*
HNSC	TCGA-P3-A6SX-01	FBN1	ENST00000316623.5	chr15	48818326:48818452:48826276:48826402:48829807:48830005,	48826277	48826402	48826281	48826281	Nonsense_Mutation	A	T	p.C286*
HNSC	TCGA-P3-A6SX-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573432	242573432	Nonsense_Mutation	C	T	p.W47*
HNSC	TCGA-P3-A6SX-01	RIMS1	ENST00000401910.3,ENST00000517827.1,ENST00000425662.2	chr6	72970407:72970470:72975662:72975752:73001636:73001749,72970407:72970470:72975662:72975752:72993749:72993821,	72975663	72975752	72975745	72975745	Nonsense_Mutation	C	T	p.R1093*
HNSC	TCGA-P3-A6SX-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122754385:122754550:122756298:122756438:122760785:122760851,	122756299	122756438	122756431	122756431	Nonsense_Mutation	G	C	p.S460*
HNSC	TCGA-P3-A6SX-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44942704:44942853:44945109:44945224:44948987:44949175,	44945110	44945224	44945195	44945195	Nonsense_Mutation	C	A	p.Y1173*
HNSC	TCGA-CN-A63U-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17743958	17743958	Nonsense_Mutation	G	T	p.E557*
HNSC	TCGA-CN-A63U-01	CLINT1	ENST00000530742.1,ENST00000523094.1,ENST00000296951.5,ENST00000523908.1	chr5	157216370:157216521:157218710:157219003:157221905:157221980,157216370:157216575:157218710:157219003:157221905:157221980,	157218711	157219003	157218920	157218920	Nonsense_Mutation	C	A	p.E373*
HNSC	TCGA-CN-A63U-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675185	176675185	Nonsense_Mutation	G	T	p.E1501*
HNSC	TCGA-CN-A63U-01	SLC30A10	ENST00000536446.1,ENST00000356609.2,ENST00000366926.3	chr1	220088790:220089290:220091596:220091836:220100369:220100447,	220091597	220091836	220091721	220091721	Nonsense_Mutation	G	T	p.Y278*
HNSC	TCGA-CV-7101-01	YTHDF3	ENST00000524135.1,ENST00000521674.1,ENST00000520640.1,ENST00000517303.1,ENST00000542911.2	chr8	64087895:64087975:64098705:64100303:64122240:64122663,	64098706	64100303	64099527	64099527	Nonsense_Mutation	C	T	p.Q319*
HNSC	TCGA-CV-7101-01	CBX1	ENST00000402583.1	chr17	46152450:46152462:46153350:46153540:46154226:46154400,	46153351	46153540	46153470	46153470	Nonsense_Mutation	G	A	p.Q71*
HNSC	TCGA-CV-7101-01	CBX1	ENST00000495350.1,ENST00000581003.1,ENST00000225603.4,ENST00000444685.1,ENST00000393408.3	chr17	46152450:46152462:46153362:46153540:46154226:46154400,	46153363	46153540	46153470	46153470	Nonsense_Mutation	G	A	p.Q71*
HNSC	TCGA-CV-7101-01	ARSF	ENST00000537104.1,ENST00000381127.1,ENST00000359361.2	chrX	3019127:3019262:3021802:3021965:3028168:3028293,	3021803	3021965	3021856	3021856	Nonsense_Mutation	C	T	p.R386*
HNSC	TCGA-CV-7101-01	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1	chr19	55497659:55497683:55501389:55501560:55501869:55502040,	55501390	55501560	55501499	55501499	Nonsense_Mutation	G	T	p.E826*
HNSC	TCGA-CV-7101-01	NLRP2	ENST00000540597.1	chr19	55497659:55497683:55501389:55501761:55501869:55502040,	55501390	55501761	55501499	55501499	Nonsense_Mutation	G	T	p.E826*
HNSC	TCGA-CV-7101-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-7101-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-7101-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8146241:8146364:8148130:8148256:8150246:8150453,	8148131	8148256	8148207	8148207	Nonsense_Mutation	G	T	p.C2379*
HNSC	TCGA-CR-7373-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248386	44248386	Nonsense_Mutation	G	C	p.S375*
HNSC	TCGA-CV-7252-01	EPHA2	ENST00000358432.5	chr1	16455928:16456084:16456720:16456914:16458215:16458365,	16456721	16456914	16456829	16456829	Nonsense_Mutation	C	T	p.W854*
HNSC	TCGA-CV-7252-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579533	7579533	Nonsense_Mutation	G	A	p.Q52*
HNSC	TCGA-CV-7252-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634140	70634140	Nonsense_Mutation	G	A	p.Q334*
HNSC	TCGA-KU-A66T-01	CAPN7	ENST00000443567.1,ENST00000253693.2	chr3	15283684:15283760:15287032:15287178:15288238:15288301,	15287033	15287178	15287140	15287140	Nonsense_Mutation	C	T	p.Q658*
HNSC	TCGA-KU-A66T-01	PIH1D1	ENST00000599366.1	chr19	49951257:49951319:49952596:49952911:49954038:49954093,	49952597	49952911	49952900	49952900	Nonsense_Mutation	T	A	p.K57*
HNSC	TCGA-KU-A66T-01	PIH1D1	ENST00000597415.1,ENST00000601807.1,ENST00000262265.5,ENST00000596049.1,ENST00000593900.1,ENST00000595516.1	chr19	49951261:49951319:49952731:49952911:49954038:49954093,	49952732	49952911	49952900	49952900	Nonsense_Mutation	T	A	p.K57*
HNSC	TCGA-KU-A66T-01	CHL1	ENST00000453040.1,ENST00000397491.2,ENST00000256509.2	chr3	436375:436555:439909:440068:440699:440831,	439910	440068	440041	440041	Nonsense_Mutation	C	T	p.Q1076*
HNSC	TCGA-CR-7368-01	EXO1	ENST00000366548.3,ENST00000518483.1,ENST00000348581.5	chr1	242042341:242042645:242045217:242045319:242048615:242048809,	242045218	242045319	242045251	242045251	Nonsense_Mutation	C	T	p.Q715*
HNSC	TCGA-CR-7368-01	DSG2	ENST00000261590.8	chr18	29102045:29102212:29104410:29104548:29104665:29104851,	29104411	29104548	29104495	29104495	Nonsense_Mutation	C	T	p.Q259*
HNSC	TCGA-CR-7368-01	ZNF75D	ENST00000370766.3	chrX	134425397:134425489:134426206:134426399:134427655:134428184,	134426207	134426399	134426280	134426280	Nonsense_Mutation	C	T	p.W177*
HNSC	TCGA-CR-7368-01	NOP58	ENST00000433543.2	chr2	203155847:203155993:203157499:203157626:203160396:203160560,203155847:203155993:203157499:203157626:203162101:203162236,	203157500	203157626	203157551	203157551	Nonsense_Mutation	C	T	p.R278*
HNSC	TCGA-CR-7368-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122773035:122773088:122794308:122794429:122801295:122801402,	122794309	122794429	122794385	122794385	Nonsense_Mutation	G	T	p.S1162*
HNSC	TCGA-CR-7368-01	SNRK	ENST00000429705.2	chr3	43328077:43328167:43344589:43345284:43373660:43373802,	43344590	43345284	43344765	43344765	Nonsense_Mutation	C	T	p.R24*
HNSC	TCGA-BA-A4II-01	SUGP1	ENST00000535070.1	chr19	19413138:19413197:19414156:19414215:19416657:19416885,	19414157	19414215	19414163	19414163	Nonsense_Mutation	G	A	p.Q253*
HNSC	TCGA-BA-A4IF-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-BA-A4IF-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-QK-A64Z-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000427724.2	chr5	149772985:149773115:149775844:149776405:149777916:149777932,	149775845	149776405	149775923	149775923	Nonsense_Mutation	C	G	p.S1324*
HNSC	TCGA-QK-A64Z-01	WDR59	ENST00000569549.1,ENST00000536050.1,ENST00000561717.1,ENST00000262144.6	chr16	74950024:74950157:74951826:74951906:74955844:74955858,	74951827	74951906	74951892	74951892	Nonsense_Mutation	G	A	p.Q301*
HNSC	TCGA-QK-A64Z-01	CASP8	ENST00000392258.3,ENST00000392266.3,ENST00000413726.1,ENST00000392259.2,ENST00000432109.2,ENST00000323492.7,ENST00000447616.1,ENST00000264274.9,ENST00000358485.4,ENST00000392263.2,ENST00000339403.6,ENST00000471383.1,ENST00000437283.1	chr2	202131209:202131514:202136238:202136344:202137360:202137448,	202136239	202136344	202136277	202136277	Nonsense_Mutation	C	A	p.S174*
HNSC	TCGA-CN-5363-01	YTHDC2	ENST00000161863.4	chr5	112915282:112915392:112917113:112917406:112919998:112920176,	112917114	112917406	112917312	112917312	Nonsense_Mutation	G	T	p.E1185*
HNSC	TCGA-CN-5363-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601109	28601109	Nonsense_Mutation	A	T	p.L251*
HNSC	TCGA-CV-7091-01	ITPA	ENST00000483354.1,ENST00000460550.1,ENST00000490838.2,ENST00000380113.3,ENST00000461029.1,ENST00000399838.3,ENST00000455664.2	chr20	3199162:3199278:3202486:3202563:3204011:3204095,	3202487	3202563	3202541	3202541	Nonsense_Mutation	C	T	p.Q156*
HNSC	TCGA-CV-6933-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
HNSC	TCGA-CV-6933-01	MAPK4	ENST00000400384.2,ENST00000540640.1	chr18	48248307:48248469:48252331:48252545:48255527:48256471,	48252332	48252545	48252451	48252451	Nonsense_Mutation	C	T	p.Q325*
HNSC	TCGA-CX-7085-01	ESR2	ENST00000344288.6	chr14	64701780:64701868:64716263:64716397:64723943:64724082,64701780:64701868:64716263:64716397:64727166:64727245,	64716264	64716397	64716327	64716327	Nonsense_Mutation	G	A	p.R388*
HNSC	TCGA-CX-7085-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963899	33963899	Nonsense_Mutation	G	C	p.S262*
HNSC	TCGA-CQ-7063-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CQ-7063-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CQ-7063-01	RAX	ENST00000334889.3	chr18	56934266:56936733:56939592:56939846:56940149:56940617,	56939593	56939846	56939841	56939841	Nonsense_Mutation	G	A	p.R99*
HNSC	TCGA-CV-6942-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
HNSC	TCGA-CV-6942-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300910	21300910	Nonsense_Mutation	C	G	p.Y480*
HNSC	TCGA-CV-6942-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41348819:41348904:41350836:41350979:41352064:41352124,	41350837	41350979	41350928	41350928	Nonsense_Mutation	G	A	p.Q632*
HNSC	TCGA-CV-6942-01	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141291988:141292063:141292785:141292909:141295841:141295948,	141292786	141292909	141292835	141292835	Nonsense_Mutation	C	G	p.S470*
HNSC	TCGA-CV-6942-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-CV-7406-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160302237:160302347:160303392:160303469:160305031:160305112,	160303393	160303469	160303419	160303419	Nonsense_Mutation	C	T	p.W120*
HNSC	TCGA-UF-A71A-06	RAB5A	ENST00000446547.1,ENST00000469122.1,ENST00000273047.4,ENST00000473608.1,ENST00000422242.1	chr3	20017134:20017244:20017538:20017661:20019801:20019895,	20017539	20017661	20017551	20017551	Nonsense_Mutation	A	T	p.R110*
HNSC	TCGA-UF-A71A-01	RAB5A	ENST00000446547.1,ENST00000469122.1,ENST00000273047.4,ENST00000473608.1,ENST00000422242.1	chr3	20017134:20017244:20017538:20017661:20019801:20019895,	20017539	20017661	20017551	20017551	Nonsense_Mutation	A	T	p.R110*
HNSC	TCGA-QK-A8Z7-01	PSMD13	ENST00000532025.1,ENST00000431206.2,ENST00000382671.4,ENST00000532097.1,ENST00000525665.1	chr11	250802:250865:251819:251936:252504:252617,251545:251626:251819:251936:252504:252617,	251820	251936	251889	251889	Nonsense_Mutation	C	T	p.R330*
HNSC	TCGA-QK-A8Z7-01	EHMT1	ENST00000488242.1,ENST00000486164.1,ENST00000462942.1,ENST00000460843.1	chr9	140705912:140706067:140707457:140707625:140707837:140707896,	140707458	140707625	140707501	140707501	Nonsense_Mutation	G	T	p.E971*
HNSC	TCGA-QK-A8Z7-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618544	201618544	Nonsense_Mutation	C	T	p.Q250*
HNSC	TCGA-QK-A8Z7-01	MYO3A	ENST00000265944.5	chr10	26442778:26442858:26443674:26443752:26446238:26446444,	26443675	26443752	26443684	26443684	Nonsense_Mutation	G	T	p.G909*
HNSC	TCGA-QK-A8Z7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204*
HNSC	TCGA-QK-A8Z7-01	PSG6	ENST00000402603.4,ENST00000292125.2,ENST00000402456.4	chr19	43414731:43415010:43420276:43420639:43421880:43422039,	43420277	43420639	43420415	43420415	Nonsense_Mutation	G	A	p.R26*
HNSC	TCGA-CV-6960-01	ZRANB3	ENST00000452187.2,ENST00000472452.1,ENST00000403017.2,ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	136103119:136103205:136107553:136107785:136111019:136111198,	136107554	136107785	136107559	136107559	Nonsense_Mutation	C	A	p.E196*
HNSC	TCGA-CV-6960-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577142	7577142	Nonsense_Mutation	C	A	p.G266*
HNSC	TCGA-CV-A45W-01	AQP8	ENST00000219660.5	chr16	25228241:25228378:25228518:25228766:25232777:25232904,	25228519	25228766	25228596	25228596	Nonsense_Mutation	G	A	p.W30*
HNSC	TCGA-CV-A45W-01	DGKD	ENST00000430834.1,ENST00000264057.2,ENST00000490764.1,ENST00000409813.3	chr2	234354268:234354408:234355357:234355442:234356732:234356827,	234355358	234355442	234355440	234355440	Nonsense_Mutation	G	T	p.E473*
HNSC	TCGA-CV-A45W-01	WBP2NL	ENST00000329620.5,ENST00000445185.1,ENST00000475341.1,ENST00000436265.1,ENST00000543212.1,ENST00000328823.9	chr22	42416007:42416100:42418252:42418360:42422769:42422798,	42418253	42418360	42418311	42418311	Nonsense_Mutation	T	A	p.Y155*
HNSC	TCGA-CV-A45W-01	PCSK5	ENST00000424854.2,ENST00000545128.1	chr9	78937967:78938204:78942924:78943155:78947348:78947526,	78942925	78943155	78943013	78943013	Nonsense_Mutation	C	A	p.C1449*
HNSC	TCGA-CV-A45W-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
HNSC	TCGA-CV-A45W-01	LMAN1L	ENST00000379709.3,ENST00000470711.2,ENST00000309664.5,ENST00000562810.1	chr15	75108497:75108652:75108767:75108875:75108972:75108993,	75108768	75108875	75108779	75108779	Nonsense_Mutation	C	A	p.Y114*
HNSC	TCGA-CV-A45W-01	TYK2	ENST00000531836.1,ENST00000525621.1,ENST00000529370.1	chr19	10479004:10479094:10488889:10489102:10490290:10490365,	10488890	10489102	10488920	10488920	Nonsense_Mutation	C	A	p.E55*
HNSC	TCGA-CV-A45W-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-A45W-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-7422-01	TMEM131	ENST00000480724.1,ENST00000186436.5	chr2	98409857:98410016:98411392:98411578:98412680:98412817,	98411393	98411578	98411468	98411468	Nonsense_Mutation	A	C	p.L1104*
HNSC	TCGA-CV-7422-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579377	7579377	Nonsense_Mutation	G	A	p.Q104*
HNSC	TCGA-CN-4729-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591279	67591279	Nonsense_Mutation	A	T	p.K593*
HNSC	TCGA-CN-5366-01	DPEP2	ENST00000572888.1,ENST00000393847.1,ENST00000412757.2	chr16	68021408:68021663:68021754:68021890:68023225:68023301,	68021755	68021890	68021883	68021883	Nonsense_Mutation	G	A	p.Q360*
HNSC	TCGA-CN-5366-01	DPEP2	ENST00000575203.1	chr16	68021408:68021663:68021754:68021960:68023225:68023301,	68021755	68021960	68021883	68021883	Nonsense_Mutation	G	A	p.Q360*
HNSC	TCGA-CN-5366-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156862	106156862	Nonsense_Mutation	C	A	p.S609*
HNSC	TCGA-CV-A45X-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180377239:180377368:180377464:180377557:180378357:180378516,	180377465	180377557	180377524	180377524	Nonsense_Mutation	C	A	p.E268*
HNSC	TCGA-D6-6826-01	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157736644:157736761:157737020:157737299:157738203:157738491,	157737021	157737299	157737023	157737023	Nonsense_Mutation	G	C	p.S387*
HNSC	TCGA-D6-6826-01	TRPV4	ENST00000418703.2,ENST00000537083.1,ENST00000538125.1,ENST00000346520.2,ENST00000536838.1,ENST00000261740.2	chr12	110236418:110236717:110238422:110238563:110240795:110240948,	110238423	110238563	110238456	110238456	Nonsense_Mutation	G	A	p.Q274*
HNSC	TCGA-D6-6826-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352354	113352354	Nonsense_Mutation	C	T	p.Q551*
HNSC	TCGA-QK-A6IG-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-QK-A6IG-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-QK-A6IG-01	DAZAP2	ENST00000549555.1,ENST00000604900.1,ENST00000449723.3,ENST00000425012.2	chr12	51632686:51632704:51634126:51634245:51634654:51634713,	51634127	51634245	51634129	51634129	Nonsense_Mutation	C	T	p.Q6*
HNSC	TCGA-QK-A6IG-01	SGMS1	ENST00000429490.1,ENST00000361781.2	chr10	52066901:52067081:52067741:52067908:52071021:52071175,	52067742	52067908	52067886	52067886	Nonsense_Mutation	C	T	p.W306*
HNSC	TCGA-QK-A6IG-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577085	7577085	Nonsense_Mutation	C	A	p.E285*
HNSC	TCGA-UF-A71D-01	AKAP6	ENST00000280979.4,ENST00000555207.1,ENST00000555950.1,ENST00000557354.1,ENST00000557272.1	chr14	33147516:33147665:33165195:33165316:33201659:33201790,	33165196	33165316	33165313	33165313	Nonsense_Mutation	C	A	p.Y999*
HNSC	TCGA-UF-A71D-01	ASS1	ENST00000443588.1	chr9	133329691:133329760:133333787:133333976:133339497:133339509,133329691:133329760:133333787:133333976:133342111:133342186,	133333788	133333976	133333932	133333932	Nonsense_Mutation	C	T	p.Q107*
HNSC	TCGA-UF-A71D-01	PIWIL1	ENST00000245255.3	chr12	130840097:130840212:130841462:130841650:130842025:130842098,	130841463	130841650	130841546	130841546	Nonsense_Mutation	G	A	p.W496*
HNSC	TCGA-UF-A71D-01	PIM1	ENST00000373509.5	chr6	37138974:37139267:37140771:37140948:37141709:37142023,	37140772	37140948	37140900	37140900	Nonsense_Mutation	G	T	p.E246*
HNSC	TCGA-UF-A71D-01	KLHL4	ENST00000373119.4	chrX	86890562:86890775:86919763:86919935:86924328:86924596,86890562:86890775:86919763:86919935:86921474:86921880,	86919764	86919935	86919928	86919928	Nonsense_Mutation	G	A	p.W697*
HNSC	TCGA-UF-A71D-01	C12orf4	ENST00000542080.1,ENST00000541014.1,ENST00000545746.1,ENST00000261250.3	chr12	4634649:4634749:4639034:4639216:4643322:4643468,	4639035	4639216	4639179	4639179	Nonsense_Mutation	C	T	p.W121*
HNSC	TCGA-UF-A71D-01	PLA1A	ENST00000495992.1	chr3	119316731:119316833:119325620:119325822:119327616:119327746,	119325621	119325822	119325794	119325794	Nonsense_Mutation	G	T	p.G83*
HNSC	TCGA-UF-A71D-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35548376	35548376	Nonsense_Mutation	C	T	p.Q620*
HNSC	TCGA-CN-6022-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74287585	74287585	Nonsense_Mutation	G	A	p.Q909*
HNSC	TCGA-CV-7248-01	CCPG1	ENST00000425574.3,ENST00000310958.6,ENST00000442196.3,ENST00000569205.1,ENST00000568372.1	chr15	55653037:55653142:55657385:55657507:55663990:55664228,	55657386	55657507	55657499	55657499	Nonsense_Mutation	G	A	p.Q239*
HNSC	TCGA-CV-7248-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468529	86468529	Nonsense_Mutation	G	T	p.E567*
HNSC	TCGA-CV-7248-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150528672:150528842:150529096:150529269:150529414:150529526,	150529097	150529269	150529140	150529140	Nonsense_Mutation	G	A	p.W540*
HNSC	TCGA-CV-7248-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670762	13670762	Nonsense_Mutation	C	T	p.Q938*
HNSC	TCGA-CN-A498-01	SPCS1	ENST00000602728.1,ENST00000423431.1,ENST00000233025.7,ENST00000474945.1	chr3	52740659:52740719:52740808:52740895:52741702:52742035,	52740809	52740895	52740832	52740832	Nonsense_Mutation	C	A	p.Y107*
HNSC	TCGA-CN-A498-01	GULP1	ENST00000409843.1,ENST00000409927.1,ENST00000410051.1,ENST00000409580.1,ENST00000409609.1,ENST00000359135.3,ENST00000409637.3,ENST00000409830.1	chr2	189348157:189348219:189387482:189387554:189393823:189393867,	189387483	189387554	189387546	189387546	Nonsense_Mutation	A	T	p.K52*
HNSC	TCGA-CN-A498-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408358	155408358	Nonsense_Mutation	G	C	p.S1863*
HNSC	TCGA-CN-A498-01	ERAP2	ENST00000513084.1	chr5	96244669:96244821:96245283:96245513:96248340:96248502,	96245284	96245513	96245440	96245440	Nonsense_Mutation	C	T	p.Q776*
HNSC	TCGA-CN-A498-01	ERAP2	ENST00000437043.3,ENST00000379904.4	chr5	96244669:96244821:96245283:96245468:96248340:96248502,	96245284	96245468	96245440	96245440	Nonsense_Mutation	C	T	p.Q776*
HNSC	TCGA-CN-4730-01	ESYT2	ENST00000251527.5,ENST00000435514.2,ENST00000275418.7	chr7	158528193:158528299:158529738:158529870:158531713:158531812,	158529739	158529870	158529772	158529772	Nonsense_Mutation	G	C	p.S816*
HNSC	TCGA-CN-4730-01	LTN1	ENST00000389194.2,ENST00000361371.5	chr21	30315583:30315658:30315988:30316226:30316704:30316918,	30315989	30316226	30315991	30315991	Nonsense_Mutation	G	C	p.Y1406*
HNSC	TCGA-CN-4730-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050586	202050586	Nonsense_Mutation	C	G	p.S29*
HNSC	TCGA-CN-4730-01	GDPD3	ENST00000360688.3,ENST00000406256.3	chr16	30119693:30119753:30122708:30122842:30123452:30123538,	30122709	30122842	30122798	30122798	Nonsense_Mutation	C	T	p.W206*
HNSC	TCGA-BB-8601-01	ELP4	ENST00000474374.1,ENST00000395934.2,ENST00000379163.5	chr11	31531324:31531554:31541602:31541638:31561208:31561330,	31541603	31541638	31541612	31541612	Nonsense_Mutation	T	A	p.L78*
HNSC	TCGA-BB-8601-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86675624:86675667:86676325:86676412:86679529:86679597,	86676326	86676412	86676366	86676366	Nonsense_Mutation	C	T	p.Q705*
HNSC	TCGA-D6-A6EP-01	COPE	ENST00000600932.1,ENST00000262812.4,ENST00000351079.4,ENST00000598969.1	chr19	19011189:19011258:19014076:19014232:19015579:19015657,	19014077	19014232	19014116	19014116	Nonsense_Mutation	C	T	p.W255*
HNSC	TCGA-D6-A6EP-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635161	32635161	Nonsense_Mutation	G	T	p.Y901*
HNSC	TCGA-D6-A6EP-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000531244.1,ENST00000265636.5,ENST00000529172.1,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68287102:68287119:68312305:68312492:68315534:68315656,68305283:68305359:68312305:68312492:68315534:68315672,	68312306	68312492	68312325	68312325	Nonsense_Mutation	G	T	p.E83*
HNSC	TCGA-D6-A6EP-01	MEIS1	ENST00000444274.2	chr2	66670096:66670180:66691240:66691352:66739280:66739323,66670096:66670180:66691240:66691352:66775074:66775151,	66691241	66691352	66691249	66691249	Nonsense_Mutation	G	A	p.W213*
HNSC	TCGA-P3-A5QE-01	USP34	ENST00000436269.1	chr2	61420035:61420115:61430274:61430341:61431390:61431465,	61430275	61430341	61430323	61430323	Nonsense_Mutation	G	A	p.R3154*
HNSC	TCGA-P3-A5QE-01	USP34	ENST00000463046.1,ENST00000398571.2	chr2	61420035:61420115:61430274:61430398:61431390:61431465,	61430275	61430398	61430323	61430323	Nonsense_Mutation	G	A	p.R3154*
HNSC	TCGA-P3-A5QE-01	CCDC88C	ENST00000389857.6	chr14	91747800:91747869:91749672:91749861:91755448:91755675,	91749673	91749861	91749741	91749741	Nonsense_Mutation	G	C	p.S1521*
HNSC	TCGA-CN-6995-01	ARHGAP11A	ENST00000565905.1,ENST00000543522.1,ENST00000567348.1,ENST00000361627.3	chr15	32920928:32921003:32921795:32921963:32925179:32925309,	32921796	32921963	32921915	32921915	Nonsense_Mutation	G	T	p.E353*
HNSC	TCGA-CN-6995-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
HNSC	TCGA-P3-A6SW-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509636	106509636	Nonsense_Mutation	C	T	p.R544*
HNSC	TCGA-P3-A6SW-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000488914.1,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41266016:41266244:41266444:41266698:41266824:41267047,	41266445	41266698	41266471	41266471	Nonsense_Mutation	C	T	p.R90*
HNSC	TCGA-P3-A5Q5-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379679.1,ENST00000338947.5,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000488717.1,ENST00000358477.2	chr13	38229224:38229420:38237552:38237866:38248364:38248504,	38237553	38237866	38237809	38237809	Nonsense_Mutation	C	A	p.E478*
HNSC	TCGA-P3-A5Q5-01	ITSN2	ENST00000361999.3,ENST00000355123.4,ENST00000479575.1	chr2	24431105:24431188:24431968:24432090:24432686:24432817,	24431969	24432090	24432036	24432036	Nonsense_Mutation	C	A	p.E1510*
HNSC	TCGA-P3-A5Q5-01	SULT1A2	ENST00000526384.1,ENST00000395630.1,ENST00000335715.4	chr16	28606687:28606785:28606870:28606996:28607103:28607255,	28606871	28606996	28606873	28606873	Nonsense_Mutation	G	C	p.S91*
HNSC	TCGA-P3-A5Q5-01	SULT1A2	ENST00000533150.1	chr16	28603583:28603802:28606687:28606996:28607103:28607255,	28606688	28606996	28606873	28606873	Nonsense_Mutation	G	C	p.S91*
HNSC	TCGA-P3-A5Q5-01	NPM2	ENST00000522813.1,ENST00000520180.1,ENST00000381530.5,ENST00000289820.6,ENST00000518119.1,ENST00000521157.1,ENST00000520125.1,ENST00000397940.1	chr8	21882946:21883032:21883157:21883283:21890640:21890667,	21883158	21883283	21883270	21883270	Nonsense_Mutation	C	G	p.S86*
HNSC	TCGA-QK-A6II-01	ZNF33B	ENST00000359467.3	chr10	43127376:43127472:43127742:43127887:43132367:43132420,	43127743	43127887	43127881	43127881	Nonsense_Mutation	G	A	p.Q6*
HNSC	TCGA-UF-A7JF-01	NSD1	ENST00000347982.4,ENST00000503056.1,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176696602:176696808:176700672:176700785:176707565:176707584,	176700673	176700785	176700720	176700720	Nonsense_Mutation	G	T	p.E1853*
HNSC	TCGA-UF-A7JF-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610310	10610310	Nonsense_Mutation	C	A	p.E134*
HNSC	TCGA-UF-A7JF-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578254	7578254	Nonsense_Mutation	C	A	p.G199*
HNSC	TCGA-CN-4725-01	KDELC1	ENST00000376004.4,ENST00000460338.1	chr13	103440183:103440273:103441361:103441571:103443250:103443488,	103441362	103441571	103441563	103441563	Nonsense_Mutation	A	C	p.Y364*
HNSC	TCGA-CV-5442-01	TINF2	ENST00000559969.1,ENST00000558476.1,ENST00000267415.7,ENST00000559549.1,ENST00000540705.1,ENST00000399423.4	chr14	24709884:24710081:24710225:24710322:24710409:24710517,	24710226	24710322	24710319	24710319	Nonsense_Mutation	G	A	p.Q171*
HNSC	TCGA-CV-5442-01	FARS2	ENST00000274680.4	chr6	5261758:5261893:5368782:5369415:5404774:5404934,	5368783	5369415	5368981	5368981	Nonsense_Mutation	C	T	p.Q60*
HNSC	TCGA-CV-5442-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926709	1926709	Nonsense_Mutation	C	A	p.E278*
HNSC	TCGA-CV-5442-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926709	1926709	Nonsense_Mutation	C	A	p.E278*
HNSC	TCGA-CX-7219-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186275989	186275989	Nonsense_Mutation	G	T	p.E380*
HNSC	TCGA-CX-7219-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50530910:50531129:50534911:50535013:50537770:50537869,	50534912	50535013	50534959	50534959	Nonsense_Mutation	C	A	p.E399*
HNSC	TCGA-CV-A461-01	ME2	ENST00000382927.3,ENST00000321341.5	chr18	48447030:48447128:48447443:48447557:48450467:48450582,	48447444	48447557	48447542	48447542	Nonsense_Mutation	T	G	p.Y347*
HNSC	TCGA-CV-A461-01	CCAR1	ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000265872.6	chr10	70547899:70548085:70549466:70549672:70550963:70551023,	70549467	70549672	70549469	70549469	Nonsense_Mutation	G	T	p.E1064*
HNSC	TCGA-CV-A461-01	SV2C	ENST00000502798.2,ENST00000322285.7	chr5	75427474:75428155:75490743:75490924:75505560:75505712,	75490744	75490924	75490835	75490835	Nonsense_Mutation	C	A	p.C224*
HNSC	TCGA-CV-A461-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351501	134351501	Nonsense_Mutation	G	T	p.E1329*
HNSC	TCGA-CV-A461-01	SLAMF6	ENST00000368057.3	chr1	160460914:160461178:160465850:160466183:160492933:160493032,	160465851	160466183	160466127	160466127	Nonsense_Mutation	C	A	p.E36*
HNSC	TCGA-CV-A461-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51751930:51752043:51768394:51768525:51768783:51768840,	51768395	51768525	51768499	51768499	Nonsense_Mutation	T	A	p.R2298*
HNSC	TCGA-CV-A461-01	BROX	ENST00000537020.1,ENST00000539697.1,ENST00000340934.5	chr1	222902100:222902170:222902961:222903043:222903368:222903519,	222902962	222903043	222903001	222903001	Nonsense_Mutation	A	T	p.K266*
HNSC	TCGA-QK-A8ZB-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
HNSC	TCGA-QK-A8ZB-01	WDR44	ENST00000371822.5	chrX	117521302:117521377:117526594:117527234:117528017:117528148,117512381:117512415:117526594:117527234:117528017:117528148,	117526595	117527234	117527030	117527030	Nonsense_Mutation	G	T	p.E208*
HNSC	TCGA-QK-A6VC-01	CNOT4	ENST00000414802.1,ENST00000361528.4,ENST00000315544.5,ENST00000428680.2,ENST00000541284.1,ENST00000356162.4,ENST00000451834.1,ENST00000423368.2	chr7	135079051:135079167:135080385:135080635:135082920:135082978,	135080386	135080635	135080595	135080595	Nonsense_Mutation	G	C	p.S304*
HNSC	TCGA-QK-A6VC-01	CLEC4M	ENST00000248228.4,ENST00000598879.1,ENST00000597522.1,ENST00000357361.2	chr19	7828152:7828198:7828278:7828362:7830523:7830679,7828152:7828198:7828278:7828362:7830070:7830135,	7828279	7828362	7828326	7828326	Nonsense_Mutation	C	T	p.Q32*
HNSC	TCGA-BA-6872-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101809	168101809	Nonsense_Mutation	G	T	p.E1303*
HNSC	TCGA-BA-6872-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970971	21970971	Nonsense_Mutation	G	T	p.Y129*
HNSC	TCGA-CV-5439-01	TRPV4	ENST00000537083.1,ENST00000392719.2,ENST00000538125.1,ENST00000541794.1,ENST00000544971.1,ENST00000346520.2,ENST00000536838.1,ENST00000261740.2	chr12	110240795:110240948:110246100:110246273:110252215:110252420,	110246101	110246273	110246113	110246113	Nonsense_Mutation	C	A	p.E183*
HNSC	TCGA-CV-5439-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000429102.2	chr16	68714870:68714999:68716204:68716390:68718485:68718727,	68716205	68716390	68716358	68716358	Nonsense_Mutation	G	T	p.E384*
HNSC	TCGA-CV-5439-01	ABCA9	ENST00000370732.2,ENST00000461623.1,ENST00000453985.2,ENST00000340001.4	chr17	67031386:67031572:67031800:67031942:67039629:67039856,	67031801	67031942	67031933	67031933	Nonsense_Mutation	C	T	p.W270*
HNSC	TCGA-CR-7386-01	ZBTB17	ENST00000494020.1,ENST00000375733.2,ENST00000375743.4,ENST00000479282.1	chr1	16272648:16272789:16273429:16273618:16274785:16274992,	16273430	16273618	16273491	16273491	Nonsense_Mutation	G	C	p.S22*
HNSC	TCGA-CR-7386-01	PCBP2	ENST00000359462.5,ENST00000546652.2,ENST00000550520.2,ENST00000455667.3,ENST00000546463.1,ENST00000447282.1,ENST00000541275.1,ENST00000551104.1,ENST00000359282.5,ENST00000437231.1,ENST00000552296.2,ENST00000439930.3,ENST00000552819.1,ENST00000549863.1,ENST00000562264.1,ENST00000603815.1,ENST00000548933.1	chr12	53849244:53849277:53849668:53849785:53853055:53853187,	53849669	53849785	53849783	53849783	Nonsense_Mutation	G	T	p.E81*
HNSC	TCGA-CR-7386-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CR-7386-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CR-7386-01	TTC33	ENST00000511730.2	chr5	40730363:40730445:40746899:40747121:40755925:40756047,	40746900	40747121	40747077	40747077	Nonsense_Mutation	G	C	p.S15*
HNSC	TCGA-CR-7386-01	IQCG	ENST00000265239.6,ENST00000453254.1,ENST00000416896.1,ENST00000455191.1	chr3	197659044:197659173:197665418:197665651:197670648:197670922,	197665419	197665651	197665630	197665630	Nonsense_Mutation	C	A	p.E102*
HNSC	TCGA-CR-7386-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539227	187539227	Nonsense_Mutation	G	C	p.S2838*
HNSC	TCGA-CV-A6K1-01	MDM1	ENST00000303145.7,ENST00000541686.1,ENST00000545724.1	chr12	68719220:68719355:68720436:68720801:68724886:68725001,	68720437	68720801	68720540	68720540	Nonsense_Mutation	G	T	p.S132*
HNSC	TCGA-CV-A6K1-01	CBFA2T2	ENST00000492345.1,ENST00000346541.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32210920:32211102:32212569:32212823:32216155:32216241,	32212570	32212823	32212724	32212724	Nonsense_Mutation	C	T	p.Q292*
HNSC	TCGA-CV-A6K1-01	SLC43A2	ENST00000572135.1,ENST00000574743.1,ENST00000571650.1,ENST00000382147.4,ENST00000301335.5	chr17	1518272:1518328:1519855:1520063:1531008:1531093,	1519856	1520063	1519990	1519990	Nonsense_Mutation	C	T	p.W78*
HNSC	TCGA-CV-A6K1-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345441	23345441	Nonsense_Mutation	C	T	p.Q141*
HNSC	TCGA-CV-A6K1-01	TRIM68	ENST00000532108.1,ENST00000300747.5	chr11	4623473:4623642:4624474:4624570:4629256:4629368,4623473:4623642:4624474:4624570:4626308:4626791,	4624475	4624570	4624492	4624492	Nonsense_Mutation	G	A	p.R169*
HNSC	TCGA-CV-A6K1-01	STK32C	ENST00000368622.1,ENST00000462160.1,ENST00000298630.3,ENST00000368625.4	chr10	134037910:134038027:134038736:134038840:134039030:134039120,	134038737	134038840	134038745	134038745	Nonsense_Mutation	G	A	p.R173*
HNSC	TCGA-CV-A6K1-01	NUP54	ENST00000515460.1,ENST00000264883.3,ENST00000342467.6	chr4	77055328:77055515:77057338:77057565:77065542:77065626,77055328:77055515:77057338:77057565:77065301:77065445,	77057339	77057565	77057545	77057545	Nonsense_Mutation	G	A	p.Q106*
HNSC	TCGA-CV-A6K1-01	MPV17	ENST00000405983.1,ENST00000426513.2,ENST00000415514.1,ENST00000430991.1,ENST00000435114.1,ENST00000489478.1,ENST00000405076.1,ENST00000233545.2,ENST00000357186.6,ENST00000380044.1	chr2	27532771:27532849:27534766:27534819:27535081:27535114,	27534767	27534819	27534804	27534804	Nonsense_Mutation	G	A	p.Q86*
HNSC	TCGA-CV-6954-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76371159	76371159	Nonsense_Mutation	A	T	p.L493*
HNSC	TCGA-CV-6961-01	NACC1	ENST00000292431.4	chr19	13246013:13246967:13247045:13247219:13248084:13248190,	13247046	13247219	13247198	13247198	Nonsense_Mutation	G	T	p.E367*
HNSC	TCGA-CV-6961-01	TBC1D20	ENST00000354200.4,ENST00000494633.1,ENST00000461304.1	chr20	425693:425774:428532:428718:442979:443175,	428533	428718	428599	428599	Nonsense_Mutation	C	A	p.E64*
HNSC	TCGA-CV-6961-01	C19orf57	ENST00000346736.2,ENST00000454313.1,ENST00000586783.1	chr19	13996773:13996868:14000000:14001275:14003598:14003703,	14000001	14001275	14000824	14000824	Nonsense_Mutation	G	C	p.S282*
HNSC	TCGA-CV-6961-01	DYM	ENST00000269445.6,ENST00000579058.1,ENST00000578596.1,ENST00000418472.2,ENST00000583353.1	chr18	46905028:46905070:46906034:46906128:46917962:46918012,	46906035	46906128	46906126	46906126	Nonsense_Mutation	C	A	p.E66*
HNSC	TCGA-CV-6961-01	DTD1	ENST00000377452.3	chr20	18608770:18608877:18724743:18724915:18744003:18744561,	18724744	18724915	18724748	18724748	Nonsense_Mutation	C	G	p.S161*
HNSC	TCGA-CV-6961-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85497781:85497855:85500299:85500393:85515474:85515654,	85500300	85500393	85500377	85500377	Nonsense_Mutation	C	T	p.Q1121*
HNSC	TCGA-CV-6961-01	BIN3	ENST00000399977.4	chr8	22487954:22488091:22494434:22494475:22502267:22502316,	22494435	22494475	22494439	22494439	Nonsense_Mutation	G	A	p.Q32*
HNSC	TCGA-CV-6961-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112997	57112997	Nonsense_Mutation	C	A	p.E773*
HNSC	TCGA-CV-6961-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246316	154246316	Nonsense_Mutation	C	G	p.S128*
HNSC	TCGA-CV-6961-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246316	154246316	Nonsense_Mutation	C	G	p.S128*
HNSC	TCGA-CV-6961-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246316	154246316	Nonsense_Mutation	C	G	p.S128*
HNSC	TCGA-CV-6961-01	ZCCHC2	ENST00000586834.1,ENST00000585873.1,ENST00000269499.5	chr18	60209730:60209807:60212034:60212106:60217580:60217693,	60212035	60212106	60212054	60212054	Nonsense_Mutation	C	G	p.S383*
HNSC	TCGA-CQ-5325-01	PLD3	ENST00000599685.1,ENST00000392032.2,ENST00000602131.1,ENST00000594908.1,ENST00000409735.4,ENST00000409587.1,ENST00000596682.1,ENST00000600948.1,ENST00000359274.5,ENST00000409281.1,ENST00000356508.5,ENST00000409419.1,ENST00000493006.1	chr19	40872378:40872417:40872516:40872591:40872679:40872710,	40872517	40872591	40872532	40872532	Nonsense_Mutation	G	T	p.E15*
HNSC	TCGA-CV-6003-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
HNSC	TCGA-CV-6003-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
HNSC	TCGA-CV-6003-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
HNSC	TCGA-CV-6003-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539834	120539834	Nonsense_Mutation	A	T	p.C179*
HNSC	TCGA-CV-6003-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-6003-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-6003-01	PARD6G	ENST00000470488.2	chr18	77940738:77941033:77960592:77960815:78005159:78005231,	77960593	77960815	77960806	77960806	Nonsense_Mutation	C	A	p.E28*
HNSC	TCGA-CN-6988-01	PROX1	ENST00000366958.4,ENST00000498508.2,ENST00000261454.4,ENST00000435016.1	chr1	214178509:214178615:214184863:214185058:214208991:214209760,	214184864	214185058	214184944	214184944	Nonsense_Mutation	C	G	p.Y638*
HNSC	TCGA-D6-6825-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
HNSC	TCGA-D6-6825-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
HNSC	TCGA-D6-6825-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551294	165551294	Nonsense_Mutation	G	A	p.Q870*
HNSC	TCGA-D6-6825-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551294	165551294	Nonsense_Mutation	G	A	p.Q870*
HNSC	TCGA-D6-A6EO-01	IL12RB2	ENST00000541374.1,ENST00000371000.1,ENST00000262345.1,ENST00000544434.1	chr1	67787284:67787572:67792417:67792532:67793882:67794067,	67792418	67792532	67792498	67792498	Nonsense_Mutation	C	T	p.R149*
HNSC	TCGA-CV-A6JD-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660200	77660200	Nonsense_Mutation	C	T	p.R292*
HNSC	TCGA-CV-A6JD-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8751710	8751710	Nonsense_Mutation	G	T	p.S376*
HNSC	TCGA-CV-A6JD-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-A6JD-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-HD-8224-01	AGPAT3	ENST00000479117.1,ENST00000398058.1,ENST00000398063.2,ENST00000291572.8,ENST00000327505.2,ENST00000467358.1,ENST00000484865.1,ENST00000398061.1,ENST00000546158.1	chr21	45391283:45391371:45397926:45398002:45400869:45401068,	45397927	45398002	45397973	45397973	Nonsense_Mutation	C	T	p.Q272*
HNSC	TCGA-HD-8224-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152322482	152322482	Nonsense_Mutation	G	T	p.E2150*
HNSC	TCGA-CN-4742-01	NEIL3	ENST00000264596.3	chr4	178262629:178262796:178272533:178272703:178274461:178274882,	178272534	178272703	178272610	178272610	Nonsense_Mutation	A	T	p.K316*
HNSC	TCGA-CN-4742-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
HNSC	TCGA-CV-7429-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088729	27088729	Nonsense_Mutation	C	T	p.Q780*
HNSC	TCGA-CV-7429-01	RUNX3	ENST00000308873.6,ENST00000399916.1,ENST00000496967.1,ENST00000338888.3,ENST00000540420.1	chr1	25233749:25233908:25245730:25245835:25254064:25254221,	25245731	25245835	25245773	25245773	Nonsense_Mutation	G	A	p.R182*
HNSC	TCGA-P3-A5Q6-01	ABCB1	ENST00000543898.1,ENST00000265724.3	chr7	87168583:87168661:87170672:87170780:87173444:87173591,	87170673	87170780	87170747	87170747	Nonsense_Mutation	G	A	p.R749*
HNSC	TCGA-P3-A5QF-01	JAKMIP2	ENST00000265272.5,ENST00000507386.1,ENST00000333010.6	chr5	147019194:147019323:147020266:147020386:147021270:147021327,	147020267	147020386	147020328	147020328	Nonsense_Mutation	G	T	p.S447*
HNSC	TCGA-P3-A5QF-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17191186	17191186	Nonsense_Mutation	C	A	p.E35*
HNSC	TCGA-P3-A5QF-01	HVCN1	ENST00000356742.5,ENST00000548312.1,ENST00000549442.1,ENST00000242607.8	chr12	111093038:111093143:111098968:111099253:111121029:111121069,	111098969	111099253	111098971	111098971	Nonsense_Mutation	G	A	p.Q102*
HNSC	TCGA-P3-A5QF-01	UBAP2	ENST00000418786.2,ENST00000488443.1	chr9	33932559:33932626:33933487:33933626:33935836:33935876,33927849:33927990:33933487:33933626:33935836:33935876,	33933488	33933626	33933498	33933498	Nonsense_Mutation	G	A	p.Q700*
HNSC	TCGA-P3-A5QF-01	PRKACB	ENST00000470673.1,ENST00000432111.1,ENST00000394838.2,ENST00000446538.1,ENST00000370685.3,ENST00000370680.1,ENST00000370689.2,ENST00000450730.1,ENST00000370684.1,ENST00000370688.3,ENST00000413538.1,ENST00000417530.1,ENST00000436133.1,ENST00000370682.3	chr1	84647882:84648011:84649719:84649818:84650782:84650865,	84649720	84649818	84649756	84649756	Nonsense_Mutation	G	T	p.E92*
HNSC	TCGA-P3-A5QF-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42045958	42045958	Nonsense_Mutation	G	C	p.S1504*
HNSC	TCGA-P3-A5QF-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820792	3820792	Nonsense_Mutation	G	A	p.Q887*
HNSC	TCGA-P3-A5QF-01	HNRNPDL	ENST00000514511.1	chr4	83348342:83348457:83348585:83348717:83349170:83349332,83348342:83348457:83348585:83348717:83350400:83350578,	83348586	83348717	83348705	83348705	Nonsense_Mutation	C	A	p.E263*
HNSC	TCGA-CN-5355-01	VPS33B	ENST00000333371.3,ENST00000535906.1,ENST00000574755.1,ENST00000554264.1,ENST00000556096.2,ENST00000535843.1	chr15	91553030:91553076:91557033:91557101:91557613:91557663,	91557034	91557101	91557072	91557072	Nonsense_Mutation	G	A	p.R107*
HNSC	TCGA-CR-6478-01	NTM	ENST00000550167.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132016175:132016408:132081915:132082041:132177582:132177656,	132081916	132082041	132081943	132081943	Nonsense_Mutation	C	G	p.S143*
HNSC	TCGA-CV-A45Y-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815483	82815483	Nonsense_Mutation	C	G	p.S453*
HNSC	TCGA-F7-A624-01	AARS2	ENST00000244571.4	chr6	44274659:44274768:44274985:44275131:44278035:44278180,	44274986	44275131	44275104	44275104	Nonsense_Mutation	G	A	p.R308*
HNSC	TCGA-F7-A624-01	TAB2	ENST00000392282.1	chr6	149663948:149663969:149691044:149691235:149699153:149699665,149639062:149639151:149691044:149691235:149699153:149699665,	149691045	149691235	149691182	149691182	Nonsense_Mutation	C	T	p.R17*
HNSC	TCGA-F7-A624-01	CCND2	ENST00000261254.3	chr12	4387965:4388085:4398007:4398156:4409025:4414516,	4398008	4398156	4398027	4398027	Nonsense_Mutation	C	G	p.Y197*
HNSC	TCGA-F7-A624-01	MOV10L1	ENST00000262794.5,ENST00000545383.1,ENST00000395852.1	chr22	50598106:50598214:50599116:50599254:50599796:50600047,50598106:50598214:50599116:50599254:50599392:50599484,	50599117	50599254	50599150	50599150	Nonsense_Mutation	C	T	p.R1120*
HNSC	TCGA-F7-A624-01	CDC25C	ENST00000415130.2	chr5	137665241:137665336:137666675:137666903:137667283:137667483,137664172:137664218:137666675:137666903:137667283:137667483,	137666676	137666903	137666820	137666820	Nonsense_Mutation	G	T	p.S17*
HNSC	TCGA-F7-A624-01	CDC25C	ENST00000348983.3,ENST00000357274.3	chr5	137665241:137665336:137666675:137666907:137667283:137667483,137664172:137664218:137666675:137666907:137667283:137667483,	137666676	137666907	137666820	137666820	Nonsense_Mutation	G	T	p.S17*
HNSC	TCGA-F7-A624-01	ABCA4	ENST00000370225.3	chr1	94495000:94495187:94495983:94496082:94496551:94496676,	94495984	94496082	94496004	94496004	Nonsense_Mutation	G	T	p.C1444*
HNSC	TCGA-F7-A624-01	TOMM20L	ENST00000360945.2	chr14	58863015:58863059:58869397:58869479:58874043:58874144,	58869398	58869479	58869469	58869469	Nonsense_Mutation	G	A	p.W84*
HNSC	TCGA-F7-A624-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72189934	72189934	Nonsense_Mutation	G	C	p.S1637*
HNSC	TCGA-F7-A624-01	MLH1	ENST00000539477.1,ENST00000432299.1,ENST00000456676.2,ENST00000536378.1,ENST00000441265.1,ENST00000485889.1,ENST00000466900.1,ENST00000231790.2,ENST00000455445.2,ENST00000492474.1	chr3	37038114:37038200:37042445:37042544:37045891:37045965,	37042446	37042544	37042542	37042542	Nonsense_Mutation	G	T	p.E102*
HNSC	TCGA-F7-A624-01	SPCS1	ENST00000602728.1,ENST00000423431.1,ENST00000233025.7,ENST00000474945.1	chr3	52740659:52740719:52740808:52740895:52741702:52742035,	52740809	52740895	52740853	52740853	Nonsense_Mutation	G	A	p.W114*
HNSC	TCGA-F7-A624-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637555	52637555	Nonsense_Mutation	G	A	p.R889*
HNSC	TCGA-F7-A624-01	ADAM19	ENST00000257527.4,ENST00000517905.1,ENST00000517951.1,ENST00000430702.2,ENST00000394020.1	chr5	156946846:156947039:156957814:156957891:156964920:156964999,	156957815	156957891	156957825	156957825	Nonsense_Mutation	G	A	p.R133*
HNSC	TCGA-F7-A624-01	LOXL2	ENST00000389131.3	chr8	23154701:23155635:23156348:23156460:23159539:23159676,	23156349	23156460	23156368	23156368	Nonsense_Mutation	C	T	p.W742*
HNSC	TCGA-F7-A624-01	CRK	ENST00000300574.2	chr17	1326690:1326944:1339913:1340449:1359170:1359443,	1339914	1340449	1340185	1340185	Nonsense_Mutation	C	T	p.W169*
HNSC	TCGA-F7-A624-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379267	77379267	Nonsense_Mutation	T	A	p.Y410*
HNSC	TCGA-F7-A624-01	PTPRD	ENST00000381196.4,ENST00000486161.1,ENST00000397611.3,ENST00000537002.1,ENST00000355233.5,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000397617.3,ENST00000540109.1,ENST00000397606.3	chr9	8319830:8319966:8331581:8331736:8338921:8339047,	8331582	8331736	8331712	8331712	Nonsense_Mutation	G	A	p.Q1802*
HNSC	TCGA-F7-A624-01	CLPB	ENST00000544683.1,ENST00000445069.2,ENST00000535477.1,ENST00000538039.1,ENST00000539148.1,ENST00000294053.3	chr11	72091324:72091428:72114009:72114096:72141355:72141407,	72114010	72114096	72114048	72114048	Nonsense_Mutation	C	T	p.W168*
HNSC	TCGA-CX-7082-01	SLC2A6	ENST00000371899.4	chr9	136338226:136338372:136338536:136338722:136339101:136339210,	136338537	136338722	136338606	136338606	Nonsense_Mutation	G	A	p.Q385*
HNSC	TCGA-CX-7082-01	PHC3	ENST00000467570.1,ENST00000495893.2,ENST00000494943.1	chr3	169820589:169820722:169824619:169824734:169831147:169831307,	169824620	169824734	169824653	169824653	Nonsense_Mutation	G	T	p.S800*
HNSC	TCGA-CX-7082-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-CV-7089-01	NTM	ENST00000550167.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000374791.3,ENST00000374784.1	chr11	131781457:131781542:132016175:132016408:132081915:132082041,	132016176	132016408	132016253	132016253	Nonsense_Mutation	G	A	p.W82*
HNSC	TCGA-CV-7089-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541760	187541760	Nonsense_Mutation	C	A	p.E1994*
HNSC	TCGA-CV-7089-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603436	95603436	Nonsense_Mutation	G	A	p.Q542*
HNSC	TCGA-CN-6996-01	RTKN	ENST00000272430.5,ENST00000305557.5,ENST00000233330.6	chr2	74654295:74654400:74654550:74654719:74655394:74655435,	74654551	74654719	74654585	74654585	Nonsense_Mutation	C	T	p.W394*
HNSC	TCGA-CN-6996-01	FNDC4	ENST00000264703.3	chr2	27714767:27715345:27715532:27715657:27716255:27716345,	27715533	27715657	27715571	27715571	Nonsense_Mutation	C	A	p.E211*
HNSC	TCGA-QK-A652-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971153	21971153	Nonsense_Mutation	C	A	p.E69*
HNSC	TCGA-QK-A652-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971153	21971153	Nonsense_Mutation	C	A	p.E69*
HNSC	TCGA-CV-7242-01	NPLOC4	ENST00000570300.1,ENST00000331134.6,ENST00000374747.5,ENST00000574897.1,ENST00000539314.1	chr17	79580343:79580520:79589191:79589304:79596750:79596831,	79589192	79589304	79589283	79589283	Nonsense_Mutation	G	A	p.Q40*
HNSC	TCGA-CV-7242-01	CPB2	ENST00000439329.3	chr13	46658353:46658478:46661879:46661955:46679070:46679161,	46661880	46661955	46661882	46661882	Nonsense_Mutation	C	A	p.E50*
HNSC	TCGA-CV-7242-01	DPPA4	ENST00000495679.1,ENST00000487299.1,ENST00000335658.6	chr3	109047864:109047935:109049370:109049659:109050580:109050631,	109049371	109049659	109049491	109049491	Nonsense_Mutation	C	A	p.E187*
HNSC	TCGA-CV-7242-01	ABLIM2	ENST00000545242.1,ENST00000361581.5,ENST00000296372.8,ENST00000447017.2,ENST00000505872.1,ENST00000407564.3,ENST00000341937.5	chr4	8031382:8031503:8037875:8038022:8046890:8046968,	8037876	8038022	8037890	8037890	Nonsense_Mutation	G	A	p.Q102*
HNSC	TCGA-CV-7242-01	RASAL1	ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000551051.1	chr12	113539693:113539814:113541750:113541886:113541965:113542019,	113541751	113541886	113541858	113541858	Nonsense_Mutation	G	T	p.S667*
HNSC	TCGA-TN-A7HL-01	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016198	167016198	Nonsense_Mutation	G	A	p.Q592*
HNSC	TCGA-TN-A7HL-01	CCT6A	ENST00000540286.1,ENST00000462133.1,ENST00000335503.3,ENST00000275603.4	chr7	56128514:56128633:56129439:56129542:56130375:56130448,	56129440	56129542	56129470	56129470	Nonsense_Mutation	C	T	p.Q460*
HNSC	TCGA-TN-A7HL-01	SNAP91	ENST00000439399.2,ENST00000523484.2,ENST00000519779.1,ENST00000437520.1,ENST00000369690.2,ENST00000518309.2,ENST00000520213.1,ENST00000369694.2,ENST00000428679.2,ENST00000521485.1,ENST00000521931.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1,ENST00000522248.1	chr6	84372065:84372141:84375157:84375300:84417516:84417646,	84375158	84375300	84375259	84375259	Nonsense_Mutation	G	A	p.Q58*
HNSC	TCGA-TN-A7HL-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229622	8229622	Nonsense_Mutation	C	G	p.S658*
HNSC	TCGA-TN-A7HL-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000543064.1	chr6	128150620:128151079:128176174:128176333:128221986:128222103,	128176175	128176333	128176229	128176229	Nonsense_Mutation	G	A	p.Q66*
HNSC	TCGA-TN-A7HL-01	SLCO4A1	ENST00000451793.1	chr20	61299509:61299536:61299828:61299893:61300281:61300430,61299221:61299262:61299828:61299893:61300281:61300430,	61299829	61299893	61299845	61299845	Nonsense_Mutation	C	T	p.Q610*
HNSC	TCGA-TN-A7HL-01	LRRC23	ENST00000451681.1,ENST00000428946.1,ENST00000486401.1	chr12	6992867:6993083:7014748:7014923:7015572:7015619,7014037:7014067:7014748:7014923:7015572:7015619,	7014749	7014923	7014885	7014885	Nonsense_Mutation	G	T	p.E30*
HNSC	TCGA-TN-A7HL-01	NUP54	ENST00000502850.1	chr4	77052382:77052437:77053675:77053872:77065301:77065445,	77053676	77053872	77053825	77053825	Nonsense_Mutation	G	C	p.S253*
HNSC	TCGA-TN-A7HL-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90857467	90857467	Nonsense_Mutation	C	A	p.S879*
HNSC	TCGA-TN-A7HL-01	MSL1	ENST00000583127.1,ENST00000579565.1,ENST00000339569.5,ENST00000578648.1,ENST00000398532.4	chr17	38289294:38289362:38289786:38289911:38290079:38290139,	38289787	38289911	38289863	38289863	Nonsense_Mutation	C	T	p.Q545*
HNSC	TCGA-TN-A7HL-01	LGALS3	ENST00000553755.1	chr14	55595977:55596018:55604762:55605086:55606992:55607081,	55604763	55605086	55604802	55604802	Nonsense_Mutation	C	T	p.Q20*
HNSC	TCGA-TN-A7HL-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352354	113352354	Nonsense_Mutation	C	T	p.Q551*
HNSC	TCGA-TN-A7HL-01	CCPG1	ENST00000425574.3,ENST00000310958.6,ENST00000442196.3,ENST00000568808.1,ENST00000563171.1	chr15	55677797:55677912:55681562:55681631:55700418:55700457,	55681563	55681631	55681565	55681565	Nonsense_Mutation	C	A	p.E20*
HNSC	TCGA-TN-A7HL-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17624791:17625064:17626038:17626395:17628885:17629311,	17626039	17626395	17626393	17626393	Nonsense_Mutation	G	A	p.Q1183*
HNSC	TCGA-TN-A7HL-01	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11236802:11236935:11346483:11346739:11364807:11365002,	11346484	11346739	11346497	11346497	Nonsense_Mutation	G	A	p.Q539*
HNSC	TCGA-TN-A7HL-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33331002	33331002	Nonsense_Mutation	G	A	p.Q1020*
HNSC	TCGA-TN-A7HL-01	LIMS2	ENST00000410011.1	chr2	128412403:128412470:128414976:128415136:128431251:128431317,128412403:128412470:128414976:128415136:128432587:128432676,128412403:128412470:128414976:128415136:128438893:128439360,	128414977	128415136	128414994	128414994	Nonsense_Mutation	C	A	p.E47*
HNSC	TCGA-TN-A7HL-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138151	128138151	Nonsense_Mutation	C	T	p.R226*
HNSC	TCGA-BA-4077-01	EED	ENST00000263360.6,ENST00000327320.4,ENST00000534564.1,ENST00000525244.1	chr11	85977124:85977258:85979497:85979603:85988021:85988180,	85979498	85979603	85979511	85979511	Nonsense_Mutation	C	T	p.Q292*
HNSC	TCGA-BA-4077-01	ETV4	ENST00000545954.1	chr17	41622343:41622390:41622641:41622735:41623552:41623683,	41622642	41622735	41622708	41622708	Nonsense_Mutation	C	A	p.E30*
HNSC	TCGA-BA-4077-01	ETV4	ENST00000585508.1	chr17	41622343:41622390:41622641:41623036:41623552:41623683,	41622642	41623036	41622708	41622708	Nonsense_Mutation	C	A	p.E30*
HNSC	TCGA-BA-4077-01	MFSD2A	ENST00000483824.1	chr1	40420829:40421057:40422758:40422893:40424372:40424497,	40422759	40422893	40422867	40422867	Nonsense_Mutation	C	T	p.Q68*
HNSC	TCGA-CV-A6JZ-01	ACTL6A	ENST00000450518.2,ENST00000429709.2,ENST00000392662.1	chr3	179298681:179298796:179298927:179299008:179301140:179301236,	179298928	179299008	179298935	179298935	Nonsense_Mutation	C	A	p.S318*
HNSC	TCGA-CV-A6JZ-01	KCTD19	ENST00000562721.1,ENST00000304372.5,ENST00000570049.1,ENST00000569333.1,ENST00000566392.1	chr16	67337079:67337240:67338323:67338474:67354491:67354693,	67338324	67338474	67338385	67338385	Nonsense_Mutation	C	T	p.W130*
HNSC	TCGA-CV-A6JZ-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542734	187542734	Nonsense_Mutation	G	C	p.S1669*
HNSC	TCGA-CN-5365-01	ACADSB	ENST00000496730.2,ENST00000358776.4	chr10	124797262:124797363:124799981:124800188:124800724:124800895,	124799982	124800188	124800144	124800144	Nonsense_Mutation	G	T	p.E156*
HNSC	TCGA-CV-5444-01	MLXIP	ENST00000538698.1,ENST00000366272.2,ENST00000319080.7,ENST00000542417.1	chr12	122620174:122620213:122622015:122622137:122622740:122622842,	122622016	122622137	122622100	122622100	Nonsense_Mutation	C	G	p.S706*
HNSC	TCGA-CV-5444-01	TYSND1	ENST00000479086.1,ENST00000287078.6	chr10	71899109:71899897:71902423:71902609:71903597:71903728,	71902424	71902609	71902546	71902546	Nonsense_Mutation	G	C	p.S454*
HNSC	TCGA-CV-5444-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000543978.1,ENST00000524984.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000527911.1	chr11	46399747:46399779:46400006:46400050:46400540:46400661,	46400007	46400050	46400012	46400012	Nonsense_Mutation	G	T	p.E982*
HNSC	TCGA-CV-5977-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-5977-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CN-4731-01	ACVR1B	ENST00000563121.1	chr12	52377818:52377950:52378975:52379132:52385646:52385776,	52378976	52379132	52378996	52378996	Nonsense_Mutation	C	T	p.R334*
HNSC	TCGA-CN-4731-01	ANK2	ENST00000394537.3,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000510275.2,ENST00000503423.1,ENST00000509550.1,ENST00000264366.6,ENST00000514960.1	chr4	114262867:114263072:114264172:114264298:114267055:114267178,	114264173	114264298	114264272	114264272	Nonsense_Mutation	G	T	p.E1408*
HNSC	TCGA-CN-4731-01	MYEOV	ENST00000308946.3	chr11	69061640:69062043:69062793:69062962:69063058:69063129,	69062794	69062962	69062839	69062839	Nonsense_Mutation	C	A	p.C6*
HNSC	TCGA-CN-4731-01	DBI	ENST00000355857.3,ENST00000535757.1,ENST00000393103.2,ENST00000409094.1,ENST00000535617.1,ENST00000460901.1,ENST00000542275.1,ENST00000311521.4	chr2	120125763:120125881:120128315:120128378:120129820:120129983,	120128316	120128378	120128364	120128364	Nonsense_Mutation	G	A	p.W120*
HNSC	TCGA-MT-A67F-01	SERPINE2	ENST00000447280.2,ENST00000258405.4,ENST00000432738.1,ENST00000409840.3,ENST00000409304.1	chr2	224849525:224849667:224856519:224856717:224862831:224863056,	224856520	224856717	224856626	224856626	Nonsense_Mutation	C	T	p.W193*
HNSC	TCGA-MT-A67F-01	PPP4R1	ENST00000580583.1,ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9584512:9584578:9584718:9584826:9588086:9588233,	9584719	9584826	9584724	9584724	Nonsense_Mutation	G	A	p.R230*
HNSC	TCGA-MT-A67F-01	MID1	ENST00000380779.1,ENST00000380780.1,ENST00000453318.2,ENST00000413894.1,ENST00000317552.4,ENST00000380787.1,ENST00000380782.2,ENST00000380785.1	chrX	10450519:10450668:10463623:10463731:10491131:10491227,	10463624	10463731	10463668	10463668	Nonsense_Mutation	G	A	p.Q274*
HNSC	TCGA-MT-A67F-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9	chr3	25770623:25770809:25773809:25773974:25775362:25775469,	25773810	25773974	25773840	25773840	Nonsense_Mutation	C	T	p.W447*
HNSC	TCGA-MT-A67F-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717661	89717661	Nonsense_Mutation	C	A	p.S229*
HNSC	TCGA-MT-A67F-01	EIF4ENIF1	ENST00000397525.1,ENST00000397523.1,ENST00000330125.5	chr22	31858917:31859119:31859666:31859953:31864160:31864288,	31859667	31859953	31859948	31859948	Nonsense_Mutation	G	A	p.R102*
HNSC	TCGA-MT-A67F-01	IKZF2	ENST00000374319.4,ENST00000421754.2,ENST00000451136.2,ENST00000433134.1	chr2	213914573:213914604:213921634:213921823:214012431:214012536,	213921635	213921823	213921665	213921665	Nonsense_Mutation	G	A	p.Q100*
HNSC	TCGA-MT-A67F-01	IKZF2	ENST00000434687.1,ENST00000431520.1,ENST00000342002.2,ENST00000413091.3,ENST00000457361.1	chr2	213914573:213914604:213921556:213921823:214012431:214012536,	213921557	213921823	213921665	213921665	Nonsense_Mutation	G	A	p.Q100*
HNSC	TCGA-MT-A67F-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2,ENST00000505222.1,ENST00000503631.1	chr6	82941434:82941559:82943875:82943972:82949882:82950282,	82943876	82943972	82943951	82943951	Nonsense_Mutation	G	A	p.Q115*
HNSC	TCGA-CR-7388-01	EPB41L3	ENST00000540638.2,ENST00000400111.3,ENST00000545076.1,ENST00000542652.2	chr18	5396199:5396331:5397056:5397425:5406775:5406967,	5397057	5397425	5397176	5397176	Nonsense_Mutation	C	A	p.E908*
HNSC	TCGA-CR-7388-01	C12orf42	ENST00000378113.2,ENST00000548048.1,ENST00000548883.1	chr12	103695732:103696337:103699751:103700123:103762664:103762776,	103699752	103700123	103699898	103699898	Nonsense_Mutation	C	T	p.W95*
HNSC	TCGA-CR-7388-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156786	106156786	Nonsense_Mutation	G	T	p.G563*
HNSC	TCGA-CR-7388-01	PMFBP1	ENST00000237353.10,ENST00000355636.6,ENST00000537465.1,ENST00000379073.5	chr16	72157444:72157548:72158665:72158833:72159136:72159304,	72158666	72158833	72158692	72158692	Nonsense_Mutation	C	A	p.E860*
HNSC	TCGA-CR-7388-01	RIMBP2	ENST00000261655.4	chr12	130906997:130907106:130912723:130912882:130919278:130919421,	130912724	130912882	130912810	130912810	Nonsense_Mutation	C	A	p.E759*
HNSC	TCGA-CR-7388-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202141	56202141	Nonsense_Mutation	T	A	p.K1760*
HNSC	TCGA-F7-8489-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1,ENST00000555664.1	chr14	94155010:94155186:94156462:94156649:94158094:94158292,	94156463	94156649	94156479	94156479	Nonsense_Mutation	G	T	p.E2429*
HNSC	TCGA-F7-8489-01	SUGP2	ENST00000601879.1,ENST00000600239.1,ENST00000337018.6,ENST00000452918.2,ENST00000456085.2,ENST00000598240.1,ENST00000594773.1,ENST00000600377.1,ENST00000330854.11	chr19	19119125:19119237:19120663:19121151:19129917:19130038,	19120664	19121151	19120694	19120694	Nonsense_Mutation	G	A	p.Q770*
HNSC	TCGA-F7-8489-01	ADH7	ENST00000437033.2,ENST00000482593.1,ENST00000476959.1,ENST00000209665.4	chr4	100340142:100340278:100341689:100341950:100348929:100349146,	100341690	100341950	100341898	100341898	Nonsense_Mutation	G	C	p.S206*
HNSC	TCGA-CV-7255-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
HNSC	TCGA-CR-7380-01	SMAD9	ENST00000350148.5	chr13	37427555:37427812:37439673:37439895:37446794:37447052,	37439674	37439895	37439827	37439827	Nonsense_Mutation	G	A	p.R284*
HNSC	TCGA-CR-7380-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CR-7380-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-RS-A6TP-01	SEC24B	ENST00000399100.2	chr4	110384056:110384800:110394159:110394342:110402832:110402937,110384056:110384800:110394159:110394342:110412482:110412563,	110394160	110394342	110394259	110394259	Nonsense_Mutation	C	G	p.S326*
HNSC	TCGA-RS-A6TP-01	DDX59	ENST00000433235.1	chr1	200618201:200618354:200619552:200619804:200628154:200628244,200618201:200618354:200619552:200619804:200623568:200623678,	200619553	200619804	200619732	200619732	Nonsense_Mutation	G	A	p.Q379*
HNSC	TCGA-CN-5373-01	SNX30	ENST00000374232.3	chr9	115593004:115593163:115598493:115598689:115600777:115600977,	115598494	115598689	115598545	115598545	Nonsense_Mutation	G	T	p.E224*
HNSC	TCGA-CN-5373-01	IPO13	ENST00000372343.3,ENST00000492152.1	chr1	44422231:44422373:44422481:44422648:44422866:44422987,	44422482	44422648	44422613	44422613	Nonsense_Mutation	G	A	p.W412*
HNSC	TCGA-CN-5373-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CN-5373-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CN-6992-01	HERPUD2	ENST00000396081.1,ENST00000426180.1,ENST00000311350.3	chr7	35673921:35674039:35674744:35675068:35677959:35678082,	35674745	35675068	35674850	35674850	Nonsense_Mutation	C	T	p.W279*
HNSC	TCGA-CN-6992-01	ARMC6	ENST00000535795.1	chr19	19166073:19166205:19166599:19166786:19168224:19168280,	19166600	19166786	19166617	19166617	Nonsense_Mutation	C	A	p.C391*
HNSC	TCGA-CN-6992-01	ARMC6	ENST00000269932.6,ENST00000392336.3,ENST00000535612.1,ENST00000392335.2,ENST00000546344.1	chr19	19166073:19166205:19166599:19166737:19168224:19168280,	19166600	19166737	19166617	19166617	Nonsense_Mutation	C	A	p.C391*
HNSC	TCGA-CN-6992-01	COL22A1	ENST00000303045.6	chr8	139688800:139688878:139691859:139691919:139696667:139696712,	139691860	139691919	139691866	139691866	Nonsense_Mutation	A	T	p.C1022*
HNSC	TCGA-CN-6992-01	CHCHD6	ENST00000508789.1,ENST00000503119.1,ENST00000290913.3	chr3	126571489:126571573:126633522:126633593:126676258:126676394,	126633523	126633593	126633572	126633572	Nonsense_Mutation	C	G	p.S183*
HNSC	TCGA-CN-6992-01	NAA25	ENST00000551858.1,ENST00000552527.1,ENST00000549711.1,ENST00000261745.4	chr12	112509698:112509868:112512478:112512568:112513481:112513593,	112512479	112512568	112512522	112512522	Nonsense_Mutation	G	A	p.R275*
HNSC	TCGA-CN-6992-01	ADH6	ENST00000394899.2,ENST00000237653.7,ENST00000394897.1	chr4	100129824:100130085:100131238:100131455:100131571:100131659,	100131239	100131455	100131356	100131356	Nonsense_Mutation	G	T	p.Y150*
HNSC	TCGA-BA-A4IG-01	CLEC18B	ENST00000425714.2	chr16	74446934:74447056:74447476:74447574:74451956:74452196,74446934:74447056:74447476:74447574:74454398:74454490,	74447477	74447574	74447558	74447558	Nonsense_Mutation	G	C	p.S158*
HNSC	TCGA-CN-5370-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CN-5370-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-D6-A4Z9-01	LEPR	ENST00000349533.6	chr1	66087035:66087141:66088588:66088664:66098834:66101111,66087035:66087141:66088588:66088664:66095884:66096105,66087035:66087141:66088588:66088664:66101873:66102785,	66088589	66088664	66088607	66088607	Nonsense_Mutation	G	A	p.W872*
HNSC	TCGA-UF-A7JO-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-UF-A7JO-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-UF-A7JO-01	PAN2	ENST00000440411.3,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1,ENST00000547226.1	chr12	56712099:56712218:56712871:56712965:56713091:56713273,	56712872	56712965	56712917	56712917	Nonsense_Mutation	G	A	p.R1111*
HNSC	TCGA-CV-7261-01	GOLGA2	ENST00000609374.1,ENST00000421699.2	chr9	131022404:131022468:131022743:131023081:131023450:131023538,	131022744	131023081	131022971	131022971	Nonsense_Mutation	G	A	p.Q484*
HNSC	TCGA-CV-7261-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66096209:66096324:66135960:66136198:66188492:66188576,	66135961	66136198	66136078	66136078	Nonsense_Mutation	C	T	p.R239*
HNSC	TCGA-CV-7261-01	IFT122	ENST00000515783.1	chr3	129170756:129170841:129182402:129182469:129188184:129188260,	129182403	129182469	129182445	129182445	Nonsense_Mutation	C	G	p.S182*
HNSC	TCGA-BB-8596-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000429595.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000495748.1,ENST00000368207.3,ENST00000532331.1	chr6	128561179:128561295:128563665:128563747:128643183:128643318,	128563666	128563747	128563725	128563725	Nonsense_Mutation	G	C	p.S173*
HNSC	TCGA-CV-7099-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910684	29910684	Nonsense_Mutation	G	A	p.W75*
HNSC	TCGA-CV-7099-01	ALDH1L1	ENST00000472186.1,ENST00000473607.1,ENST00000273450.3,ENST00000413612.1,ENST00000452905.2,ENST00000393431.2,ENST00000393434.2	chr3	125869248:125869374:125872286:125872424:125873396:125873462,	125872287	125872424	125872405	125872405	Nonsense_Mutation	G	C	p.S247*
HNSC	TCGA-CV-7099-01	MATN2	ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000523490.1,ENST00000524308.1	chr8	98900302:98900470:98943180:98943750:98954004:98954127,	98943181	98943750	98943558	98943558	Nonsense_Mutation	C	T	p.Q174*
HNSC	TCGA-CV-7099-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54448763:54448887:54483261:54483375:54547174:54547396,	54483262	54483375	54483274	54483274	Nonsense_Mutation	C	G	p.S1068*
HNSC	TCGA-CV-7099-01	RNF13	ENST00000467996.1,ENST00000474348.1,ENST00000459632.1,ENST00000466795.1,ENST00000344229.3,ENST00000392894.3,ENST00000491086.1,ENST00000468648.1,ENST00000490631.1	chr3	149531051:149531140:149589815:149589941:149613259:149613285,149570302:149570383:149589815:149589941:149613259:149613285,	149589816	149589941	149589832	149589832	Nonsense_Mutation	C	G	p.S71*
HNSC	TCGA-CV-7099-01	ST5	ENST00000526099.1,ENST00000534127.1,ENST00000534278.1,ENST00000533081.1,ENST00000526757.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1	chr11	8720759:8720937:8724118:8724267:8728631:8728772,	8724119	8724267	8724164	8724164	Nonsense_Mutation	G	C	p.S892*
HNSC	TCGA-CV-7099-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108593	14108593	Nonsense_Mutation	C	T	p.Q1435*
HNSC	TCGA-CV-7099-01	MTFMT	ENST00000558460.1,ENST00000558614.1	chr15	65316009:65316132:65319168:65319378:65321742:65321870,	65319169	65319378	65319319	65319319	Nonsense_Mutation	G	C	p.S90*
HNSC	TCGA-CV-7099-01	KNTC1	ENST00000546125.1,ENST00000450485.2,ENST00000333479.7,ENST00000541427.1	chr12	123100016:123100073:123102889:123102944:123103028:123103084,	123102890	123102944	123102942	123102942	Nonsense_Mutation	C	G	p.S2028*
HNSC	TCGA-IQ-A6SH-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
HNSC	TCGA-CN-5360-01	PRDM5	ENST00000394435.2,ENST00000264808.3,ENST00000428209.2,ENST00000515109.1,ENST00000512845.1,ENST00000505484.1	chr4	121774572:121774695:121828628:121828712:121843670:121843836,	121828629	121828712	121828688	121828688	Nonsense_Mutation	C	A	p.G40*
HNSC	TCGA-CN-5360-01	TMEM44	ENST00000452358.1	chr3	194331654:194331749:194336297:194336399:194343952:194344039,	194336298	194336399	194336360	194336360	Nonsense_Mutation	T	A	p.R331*
HNSC	TCGA-CN-5360-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637631	176637631	Nonsense_Mutation	C	G	p.S744*
HNSC	TCGA-CN-5360-01	SFMBT1	ENST00000296295.6,ENST00000358080.2,ENST00000394752.3,ENST00000394750.1	chr3	52968828:52968917:52977368:52977609:52988332:52988427,	52977369	52977609	52977588	52977588	Nonsense_Mutation	C	A	p.G49*
HNSC	TCGA-CN-5360-01	MNDA	ENST00000368141.4	chr1	158813744:158813912:158815376:158815793:158817517:158817679,	158815377	158815793	158815619	158815619	Nonsense_Mutation	C	A	p.Y271*
HNSC	TCGA-CN-5360-01	MPPE1	ENST00000592977.1,ENST00000592331.1,ENST00000588072.1,ENST00000589731.1,ENST00000317251.4,ENST00000592894.1,ENST00000496196.1,ENST00000344987.7,ENST00000309976.9,ENST00000317235.7,ENST00000399978.2,ENST00000592447.1	chr18	11886915:11887024:11888667:11888742:11889385:11889414,	11888668	11888742	11888679	11888679	Nonsense_Mutation	C	T	p.W186*
HNSC	TCGA-BB-4224-01	ABCA13	ENST00000484268.1,ENST00000435803.1	chr7	48407390:48407505:48411764:48412094:48413943:48414013,	48411765	48412094	48411940	48411940	Nonsense_Mutation	C	G	p.S3660*
HNSC	TCGA-CV-6441-01	SAMHD1	ENST00000262878.4	chr20	35526842:35526947:35532559:35532652:35533766:35533797,	35532560	35532652	35532577	35532577	Nonsense_Mutation	C	A	p.E496*
HNSC	TCGA-CV-7102-01	HIP1	ENST00000336926.6,ENST00000434438.2	chr7	75171237:75171299:75172169:75172293:75173992:75174098,	75172170	75172293	75172176	75172176	Nonsense_Mutation	C	A	p.E962*
HNSC	TCGA-CV-7102-01	CD99L2	ENST00000355149.3	chrX	149962163:149962229:149963678:149963762:149999703:149999722,	149963679	149963762	149963727	149963727	Nonsense_Mutation	G	A	p.R128*
HNSC	TCGA-CN-A6V6-01	PLEKHG6	ENST00000304581.8	chr12	6428193:6428274:6435593:6435739:6436419:6437112,6428625:6428839:6435593:6435739:6436419:6437112,	6435594	6435739	6435720	6435720	Nonsense_Mutation	C	T	p.Q519*
HNSC	TCGA-CN-A6V6-01	PCCA	ENST00000424527.1,ENST00000376285.1,ENST00000376279.3,ENST00000376286.4	chr13	100982814:100982925:100992410:100992513:101020725:101020828,	100992411	100992513	100992479	100992479	Nonsense_Mutation	C	T	p.Q537*
HNSC	TCGA-HD-7229-01	CDH18	ENST00000502796.1	chr5	19473723:19473825:19483409:19483552:19503100:19503218,	19483410	19483552	19483518	19483518	Nonsense_Mutation	C	A	p.E592*
HNSC	TCGA-HD-7229-01	CDH18	ENST00000382275.1,ENST00000507958.1,ENST00000274170.4	chr5	19473723:19473825:19483409:19483661:19503100:19503218,	19483410	19483661	19483518	19483518	Nonsense_Mutation	C	A	p.E592*
HNSC	TCGA-HD-7229-01	CDH18	ENST00000506372.1	chr5	19473723:19473825:19483409:19483555:19503100:19503218,	19483410	19483555	19483518	19483518	Nonsense_Mutation	C	A	p.E592*
HNSC	TCGA-CQ-6227-01	GRIK1	ENST00000399909.1,ENST00000399914.1,ENST00000389125.3,ENST00000327783.4,ENST00000399907.1,ENST00000389124.2,ENST00000309434.7,ENST00000399913.1,ENST00000535441.1	chr21	30927372:30927623:30933944:30934170:30949283:30949501,	30933945	30934170	30934006	30934006	Nonsense_Mutation	G	T	p.C750*
HNSC	TCGA-CQ-6227-01	B3GNT3	ENST00000318683.6	chr19	17905965:17906015:17918566:17919183:17922379:17922562,	17918567	17919183	17918902	17918902	Nonsense_Mutation	C	T	p.Q96*
HNSC	TCGA-CQ-6227-01	B3GNT3	ENST00000595387.1	chr19	17905965:17906015:17918547:17919183:17922379:17922562,	17918548	17919183	17918902	17918902	Nonsense_Mutation	C	T	p.Q96*
HNSC	TCGA-CN-A63W-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
HNSC	TCGA-CN-A63W-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638879	176638879	Nonsense_Mutation	G	A	p.W1160*
HNSC	TCGA-CN-A63W-01	TAOK3	ENST00000541186.1,ENST00000535570.1,ENST00000419821.2,ENST00000392533.3	chr12	118681234:118681321:118682698:118682770:118693252:118693460,	118682699	118682770	118682749	118682749	Nonsense_Mutation	C	A	p.E48*
HNSC	TCGA-CQ-A4C6-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
HNSC	TCGA-CQ-A4C6-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470317	161470317	Nonsense_Mutation	C	G	p.S338*
HNSC	TCGA-CQ-A4C6-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-CQ-A4C6-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-CQ-A4C6-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CQ-A4C6-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-KU-A66S-01	CPEB1	ENST00000568128.1	chr15	83240195:83240282:83295943:83296118:83315959:83316254,83240195:83240282:83295943:83296118:83315887:83316110,83240195:83240282:83295943:83296118:83316606:83316728,	83295944	83296118	83296034	83296034	Nonsense_Mutation	G	A	p.R61*
HNSC	TCGA-KU-A66S-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320063	46320063	Nonsense_Mutation	C	A	p.G826*
HNSC	TCGA-KU-A66S-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101099	27101099	Nonsense_Mutation	C	T	p.R1461*
HNSC	TCGA-KU-A66S-01	ZC3H14	ENST00000556000.1,ENST00000554020.1,ENST00000251038.5,ENST00000555900.1,ENST00000393514.5	chr14	89068378:89068427:89069171:89069404:89073586:89073707,	89069172	89069404	89069315	89069315	Nonsense_Mutation	C	G	p.S553*
HNSC	TCGA-KU-A66S-01	ZC3H14	ENST00000555755.1	chr14	89068378:89068427:89069171:89069389:89073586:89073707,	89069172	89069389	89069315	89069315	Nonsense_Mutation	C	G	p.S553*
HNSC	TCGA-KU-A66S-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921681	57921681	Nonsense_Mutation	C	T	p.Q763*
HNSC	TCGA-D6-8568-01	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70938336:70938443:70946556:70946800:70948939:70949089,	70946557	70946800	70946777	70946777	Nonsense_Mutation	G	A	p.Q1723*
HNSC	TCGA-CR-6491-01	SYNE1	ENST00000367255.5,ENST00000490135.2,ENST00000265368.4,ENST00000448038.1,ENST00000423061.1	chr6	152637983:152638121:152639215:152639398:152639997:152640150,	152639216	152639398	152639352	152639352	Nonsense_Mutation	A	T	p.L5479*
HNSC	TCGA-CN-A49A-01	MAPRE2	ENST00000300249.5,ENST00000588910.1	chr18	32621453:32621625:32650158:32650286:32677409:32677522,	32650159	32650286	32650271	32650271	Nonsense_Mutation	G	T	p.E67*
HNSC	TCGA-CN-A49A-01	BRIP1	ENST00000577598.1,ENST00000259008.2,ENST00000579028.1	chr17	59853761:59853923:59857621:59857762:59858200:59858366,	59857622	59857762	59857704	59857704	Nonsense_Mutation	G	C	p.S618*
HNSC	TCGA-CN-A49A-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876247	27876247	Nonsense_Mutation	G	A	p.Q794*
HNSC	TCGA-CN-A641-01	DDX20	ENST00000533164.1,ENST00000369702.4,ENST00000536167.1	chr1	112303847:112303906:112304876:112304959:112305298:112305404,	112304877	112304959	112304936	112304936	Nonsense_Mutation	A	T	p.R361*
HNSC	TCGA-CN-A641-01	HERC2	ENST00000261609.7	chr15	28457590:28457729:28458887:28459118:28459221:28459418,	28458888	28459118	28458989	28458989	Nonsense_Mutation	C	A	p.G2229*
HNSC	TCGA-CN-A641-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	95995671:95995877:96005702:96006378:96012072:96012255,	96005703	96006378	96006283	96006283	Nonsense_Mutation	G	T	p.G1001*
HNSC	TCGA-CV-7411-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000514617.1,ENST00000507873.2	chr4	48517225:48517292:48523064:48523232:48524917:48525121,	48523065	48523232	48523208	48523208	Nonsense_Mutation	C	A	p.E2516*
HNSC	TCGA-CV-7411-01	MCCC2	ENST00000512218.2,ENST00000323375.8,ENST00000340941.6	chr5	70945895:70946010:70948495:70948581:70952569:70953039,	70948496	70948581	70948526	70948526	Nonsense_Mutation	G	T	p.E507*
HNSC	TCGA-CN-A63Y-01	ARID1B	ENST00000367148.1,ENST00000275248.4,ENST00000414678.2	chr6	157100566:157100605:157150360:157150555:157222509:157222659,	157150361	157150555	157150436	157150436	Nonsense_Mutation	C	T	p.Q540*
HNSC	TCGA-CN-A63Y-01	TRIM36	ENST00000513154.1	chr5	114482872:114483091:114499214:114499449:114505304:114505427,	114499215	114499449	114499269	114499269	Nonsense_Mutation	G	A	p.R70*
HNSC	TCGA-CN-A63Y-01	NADK	ENST00000378625.1,ENST00000342348.5,ENST00000497186.1,ENST00000344463.4,ENST00000400922.2,ENST00000477235.1,ENST00000341426.5,ENST00000341991.3,ENST00000469045.1,ENST00000480499.1	chr1	1686110:1686137:1686812:1686915:1687696:1687766,	1686813	1686915	1686840	1686840	Nonsense_Mutation	G	A	p.Q366*
HNSC	TCGA-CN-5367-01	GUCY1A2	ENST00000282249.2,ENST00000526355.2	chr11	106647164:106647308:106680718:106681204:106810185:106810904,	106680719	106681204	106681089	106681089	Nonsense_Mutation	G	C	p.S441*
HNSC	TCGA-CR-7364-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709508	176709508	Nonsense_Mutation	G	T	p.E1979*
HNSC	TCGA-CR-7364-01	CSMD3	ENST00000343508.3,ENST00000534172.1,ENST00000297405.5,ENST00000339701.3,ENST00000455883.2,ENST00000352409.3	chr8	113246593:113246706:113249418:113249577:113253948:113254014,	113249419	113249577	113249531	113249531	Nonsense_Mutation	G	C	p.Y3505*
HNSC	TCGA-CR-7364-01	CUX2	ENST00000397643.3,ENST00000261726.6,ENST00000551604.2	chr12	111652104:111652114:111655693:111655741:111701564:111701643,	111655694	111655741	111655724	111655724	Nonsense_Mutation	A	T	p.K69*
HNSC	TCGA-CR-7364-01	SELE	ENST00000333360.7	chr1	169696489:169696666:169696879:169697068:169697198:169697387,	169696880	169697068	169696913	169696913	Nonsense_Mutation	C	A	p.G479*
HNSC	TCGA-CR-7364-01	TIMM50	ENST00000602265.1,ENST00000597666.1,ENST00000544017.1,ENST00000601358.1	chr19	39976183:39976242:39976327:39976447:39976826:39976931,39973774:39973796:39976327:39976447:39976826:39976931,	39976328	39976447	39976376	39976376	Nonsense_Mutation	G	T	p.E244*
HNSC	TCGA-CR-7364-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86312264	86312264	Nonsense_Mutation	C	A	p.E260*
HNSC	TCGA-CR-7364-01	FTCD	ENST00000359679.2,ENST00000397748.1,ENST00000446405.1	chr21	47556898:47556967:47557152:47557248:47558421:47558486,	47557153	47557248	47557204	47557204	Nonsense_Mutation	G	A	p.Q482*
HNSC	TCGA-CR-7364-01	KANK1	ENST00000382303.1,ENST00000382286.1,ENST00000382293.3,ENST00000382297.2,ENST00000489369.1	chr9	734747:734835:738284:738504:740791:740934,	738285	738504	738306	738306	Nonsense_Mutation	C	T	p.Q1119*
HNSC	TCGA-CR-7364-01	IGF2BP3	ENST00000421467.2,ENST00000495009.1,ENST00000258729.3,ENST00000480547.1,ENST00000497563.1	chr7	23381714:23381808:23383336:23383472:23385558:23385681,	23383337	23383472	23383461	23383461	Nonsense_Mutation	A	T	p.L318*
HNSC	TCGA-CV-7434-01	CSF2RB	ENST00000406230.1,ENST00000262825.5,ENST00000421539.1,ENST00000403662.3	chr22	37319285:37319409:37322028:37322219:37325443:37325601,	37322029	37322219	37322077	37322077	Nonsense_Mutation	G	A	p.W83*
HNSC	TCGA-QK-A6VB-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266069	75266069	Nonsense_Mutation	C	T	p.R1357*
HNSC	TCGA-QK-A6VB-01	PRPF40B	ENST00000551111.1	chr12	50026637:50026663:50026796:50027330:50027419:50027444,	50026797	50027330	50026874	50026874	Nonsense_Mutation	G	A	p.W114*
HNSC	TCGA-QK-A6VB-01	PRPF40B	ENST00000551320.1,ENST00000548825.2,ENST00000261897.1,ENST00000548436.1,ENST00000380281.1	chr12	50026637:50026663:50026796:50026907:50027209:50027330,	50026797	50026907	50026874	50026874	Nonsense_Mutation	G	A	p.W114*
HNSC	TCGA-QK-A6VB-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16022736:16022799:16024365:16024583:16029395:16029520,	16024366	16024583	16024504	16024504	Nonsense_Mutation	G	A	p.R572*
HNSC	TCGA-QK-A6VB-01	THBS2	ENST00000366787.3	chr6	169639693:169639790:169640546:169640687:169641856:169642053,	169640547	169640687	169640616	169640616	Nonsense_Mutation	C	T	p.W321*
HNSC	TCGA-CQ-6218-01	RIBC1	ENST00000375327.3	chrX	53454950:53455032:53455230:53455575:53456801:53456920,	53455231	53455575	53455530	53455530	Nonsense_Mutation	C	T	p.Q167*
HNSC	TCGA-CV-A45Q-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730891	150730891	Nonsense_Mutation	G	T	p.E99*
HNSC	TCGA-CV-A45Q-01	ERMP1	ENST00000214893.5	chr9	5812888:5813035:5823895:5824001:5830726:5830787,	5823896	5824001	5823980	5823980	Nonsense_Mutation	G	A	p.Q264*
HNSC	TCGA-CV-A45Q-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44896899:44896934:44910953:44911047:44913073:44913200,	44910954	44911047	44910975	44910975	Nonsense_Mutation	G	T	p.E226*
HNSC	TCGA-CV-A45Q-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542861	187542861	Nonsense_Mutation	G	A	p.R1627*
HNSC	TCGA-CV-A45Q-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107626466:107626530:107626619:107626808:107635331:107635405,	107626620	107626808	107626633	107626633	Nonsense_Mutation	G	C	p.S224*
HNSC	TCGA-CQ-5332-01	UHRF2	ENST00000276893.5,ENST00000484159.1,ENST00000468435.2	chr9	6421030:6421142:6460572:6460791:6475390:6475500,6434087:6434173:6460572:6460791:6475390:6475500,	6460573	6460791	6460622	6460622	Nonsense_Mutation	C	T	p.R232*
HNSC	TCGA-CQ-5332-01	ZNF7	ENST00000532382.1	chr8	146052967:146052994:146054427:146054989:146062775:146062892,	146054428	146054989	146054860	146054860	Nonsense_Mutation	C	T	p.Q12*
HNSC	TCGA-CQ-5332-01	ZNF7	ENST00000529767.1	chr8	146054427:146054475:146054811:146054989:146062775:146062892,	146054812	146054989	146054860	146054860	Nonsense_Mutation	C	T	p.Q12*
HNSC	TCGA-CQ-5332-01	ZNF7	ENST00000446747.2,ENST00000325217.5	chr8	146054427:146054475:146054829:146054989:146062775:146062892,	146054830	146054989	146054860	146054860	Nonsense_Mutation	C	T	p.Q12*
HNSC	TCGA-CV-7435-01	WWC1	ENST00000521089.1,ENST00000265293.4,ENST00000519859.1,ENST00000523043.1,ENST00000393895.3	chr5	167798428:167798538:167812215:167812419:167824728:167824791,	167812216	167812419	167812359	167812359	Nonsense_Mutation	C	T	p.Q125*
HNSC	TCGA-CV-7440-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5789010	5789010	Nonsense_Mutation	C	G	p.S1209*
HNSC	TCGA-CV-7440-01	CSNK2A1	ENST00000217244.3	chr20	485761:485873:489094:489304:524315:524340,485761:485873:489094:489304:508576:508693,	489095	489304	489118	489118	Nonsense_Mutation	G	T	p.Y26*
HNSC	TCGA-CV-7440-01	FAM184A	ENST00000368475.4,ENST00000521531.1,ENST00000352896.5,ENST00000522284.1,ENST00000338891.7	chr6	119337911:119338109:119341142:119341324:119344109:119344245,	119341143	119341324	119341265	119341265	Nonsense_Mutation	C	A	p.E404*
HNSC	TCGA-CV-7440-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637776	176637776	Nonsense_Mutation	C	A	p.C792*
HNSC	TCGA-CN-A6V7-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1,ENST00000431319.1	chr2	10799297:10799376:10803084:10803170:10807343:10807404,	10803085	10803170	10803140	10803140	Nonsense_Mutation	G	A	p.R208*
HNSC	TCGA-CN-A6V7-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155143409:155143543:155145367:155145512:155148305:155148374,	155145368	155145512	155145426	155145426	Nonsense_Mutation	C	A	p.S662*
HNSC	TCGA-CN-A6V7-01	TAPBP	ENST00000480730.1,ENST00000437116.2,ENST00000426633.2,ENST00000456592.2,ENST00000434618.2	chr6	33272999:33273164:33280993:33281254:33281470:33281641,	33280994	33281254	33281027	33281027	Nonsense_Mutation	G	A	p.Q146*
HNSC	TCGA-CN-A6V7-01	WAC	ENST00000345541.6	chr10	28900702:28900851:28903495:28905291:28906585:28906713,	28903496	28905291	28905158	28905158	Nonsense_Mutation	C	G	p.S493*
HNSC	TCGA-CN-A6V7-01	WAC	ENST00000375664.4,ENST00000354911.4,ENST00000375646.1,ENST00000347934.4,ENST00000439676.1	chr10	28903495:28903614:28905101:28905291:28906585:28906713,	28905102	28905291	28905158	28905158	Nonsense_Mutation	C	G	p.S493*
HNSC	TCGA-QK-AA3J-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637762	176637762	Nonsense_Mutation	C	T	p.R788*
HNSC	TCGA-DQ-7593-01	SH3GLB2	ENST00000372559.1,ENST00000372564.3,ENST00000416629.1,ENST00000372554.4,ENST00000483980.1,ENST00000417224.1	chr9	131777049:131777183:131783369:131783498:131784560:131784626,	131783370	131783498	131783493	131783493	Nonsense_Mutation	G	A	p.R71*
HNSC	TCGA-DQ-7593-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40439977	40439977	Nonsense_Mutation	C	A	p.E312*
HNSC	TCGA-CR-7390-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187517874	187517874	Nonsense_Mutation	C	A	p.E4274*
HNSC	TCGA-CR-7390-01	AP1G2	ENST00000465445.2,ENST00000556966.1,ENST00000397120.3,ENST00000308724.5,ENST00000555510.1,ENST00000535852.2,ENST00000460049.2	chr14	24030617:24030640:24030720:24030844:24031170:24031262,	24030721	24030844	24030798	24030798	Nonsense_Mutation	G	A	p.Q594*
HNSC	TCGA-CR-7390-01	ITFG1	ENST00000537184.2,ENST00000544001.2,ENST00000567957.1,ENST00000568047.1,ENST00000542691.1,ENST00000320640.6	chr16	47195660:47195743:47196450:47196575:47252778:47252857,	47196451	47196575	47196540	47196540	Nonsense_Mutation	G	A	p.Q497*
HNSC	TCGA-CR-7390-01	TSPAN9	ENST00000407263.1,ENST00000537971.1,ENST00000011898.5	chr12	3324416:3324521:3387586:3387778:3388157:3388172,3310342:3310422:3387586:3387778:3388157:3388172,	3387587	3387778	3387622	3387622	Nonsense_Mutation	G	A	p.W33*
HNSC	TCGA-CQ-A4CB-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626245	82626245	Nonsense_Mutation	G	A	p.R130*
HNSC	TCGA-CQ-A4CB-01	GIT1	ENST00000579937.1,ENST00000394869.3,ENST00000579536.1,ENST00000225394.3,ENST00000581348.1	chr17	27908355:27908398:27908759:27908854:27908944:27909162,	27908760	27908854	27908805	27908805	Nonsense_Mutation	C	A	p.E225*
HNSC	TCGA-UF-A7JJ-01	SLC25A32	ENST00000523866.1,ENST00000543107.1	chr8	104417003:104417089:104419861:104420012:104427011:104427297,104415391:104415552:104419861:104420012:104427011:104427297,	104419862	104420012	104419870	104419870	Nonsense_Mutation	G	T	p.Y99*
HNSC	TCGA-UF-A7JJ-01	EPB41L3	ENST00000341928.2,ENST00000342933.3	chr18	5410564:5410618:5415816:5416377:5419709:5419793,	5415817	5416377	5416179	5416179	Nonsense_Mutation	G	A	p.Q569*
HNSC	TCGA-UF-A7JJ-01	EIF5A	ENST00000336458.8,ENST00000336452.7,ENST00000416016.2,ENST00000571955.1,ENST00000573542.1,ENST00000576930.1,ENST00000419711.2,ENST00000573714.1	chr17	7214336:7214441:7214668:7214800:7214896:7214934,	7214669	7214800	7214723	7214723	Nonsense_Mutation	C	T	p.R109*
HNSC	TCGA-UF-A7JJ-01	RPS25	ENST00000527673.1	chr11	118886550:118886649:118888071:118888255:118888667:118888679,	118888072	118888255	118888251	118888251	Nonsense_Mutation	C	T	p.W35*
HNSC	TCGA-CR-5247-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CR-5247-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CN-6023-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724421	112724421	Nonsense_Mutation	C	G	p.S102*
HNSC	TCGA-BA-5558-01	CASP6	ENST00000507550.1,ENST00000505117.1,ENST00000265164.2,ENST00000352981.3,ENST00000510324.1	chr4	110610418:110610724:110612005:110612165:110615680:110615745,	110612006	110612165	110612108	110612108	Nonsense_Mutation	G	A	p.Q181*
HNSC	TCGA-BA-5558-01	POLL	ENST00000370162.3,ENST00000370172.1,ENST00000426919.1,ENST00000370169.1,ENST00000299206.4	chr10	103343358:103343438:103344358:103344676:103345618:103345913,103343358:103343438:103344358:103344676:103345072:103345235,	103344359	103344676	103344516	103344516	Nonsense_Mutation	G	C	p.S245*
HNSC	TCGA-BA-5558-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-BA-5558-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-A6JT-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156747	106156747	Nonsense_Mutation	C	T	p.R571*
HNSC	TCGA-CV-A6JT-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105495239:105495386:105572257:105572508:105586253:105586435,	105572258	105572508	105572430	105572430	Nonsense_Mutation	G	A	p.Q83*
HNSC	TCGA-CQ-7071-01	PRLR	ENST00000231423.3	chr5	35048876:35049513:35066050:35066204:35068317:35068387,	35066051	35066204	35066071	35066071	Nonsense_Mutation	G	C	p.S330*
HNSC	TCGA-CQ-7071-01	KPNA1	ENST00000344337.6,ENST00000482287.1,ENST00000464940.1,ENST00000465882.1	chr3	122170836:122170911:122172716:122172848:122180070:122180165,	122172717	122172848	122172742	122172742	Nonsense_Mutation	G	C	p.S180*
HNSC	TCGA-CQ-7071-01	LRRK2	ENST00000416796.1,ENST00000298910.7,ENST00000343742.2	chr12	40619396:40619442:40626075:40626185:40629427:40629516,	40626076	40626185	40626086	40626086	Nonsense_Mutation	C	G	p.S83*
HNSC	TCGA-CQ-7071-01	USP48	ENST00000421625.2,ENST00000400301.1,ENST00000308271.9	chr1	22055104:22055212:22056196:22056325:22062938:22063118,	22056197	22056325	22056206	22056206	Nonsense_Mutation	G	A	p.Q431*
HNSC	TCGA-CQ-7071-01	USP48	ENST00000529637.1	chr1	22055104:22055212:22056196:22056322:22062938:22063118,	22056197	22056322	22056206	22056206	Nonsense_Mutation	G	A	p.Q431*
HNSC	TCGA-CQ-7071-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670176	95670176	Nonsense_Mutation	G	A	p.Q504*
HNSC	TCGA-CN-A49B-01	SLA	ENST00000519747.1,ENST00000523610.1,ENST00000518594.1,ENST00000520106.1,ENST00000338087.5,ENST00000519341.1,ENST00000522002.1	chr8	134063136:134063160:134072344:134072445:134087097:134087198,	134072345	134072445	134072440	134072440	Nonsense_Mutation	C	T	p.W6*
HNSC	TCGA-CN-A49B-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485180	35485180	Nonsense_Mutation	G	A	p.Q68*
HNSC	TCGA-CV-A465-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157727	145157727	Nonsense_Mutation	G	A	p.R343*
HNSC	TCGA-BA-4075-01	DNAH3	ENST00000261383.3,ENST00000415178.1,ENST00000572640.1	chr16	21011545:21011840:21014425:21014529:21030945:21031191,	21014426	21014529	21014470	21014470	Nonsense_Mutation	G	A	p.Q2028*
HNSC	TCGA-BA-4075-01	ANKRD30B	ENST00000447268.2,ENST00000580206.1,ENST00000358984.4	chr18	14784461:14784534:14787037:14787099:14791399:14791490,	14787038	14787099	14787090	14787090	Nonsense_Mutation	G	A	p.W575*
HNSC	TCGA-BA-4075-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073529	46073529	Nonsense_Mutation	G	T	p.E316*
HNSC	TCGA-BA-4075-01	EGF	ENST00000503392.1,ENST00000265171.5,ENST00000509793.1	chr4	110885556:110885693:110890126:110890275:110895858:110895963,	110890127	110890275	110890205	110890205	Nonsense_Mutation	G	T	p.E552*
HNSC	TCGA-BA-4075-01	PPP2CB	ENST00000221138.4	chr8	30655096:30655270:30657061:30657271:30669835:30670113,	30657062	30657271	30657106	30657106	Nonsense_Mutation	C	A	p.G90*
HNSC	TCGA-CN-6013-01	RPL37	ENST00000508493.1	chr5	40834299:40834367:40834572:40834708:40835284:40835314,	40834573	40834708	40834692	40834692	Nonsense_Mutation	G	T	p.S7*
HNSC	TCGA-CN-6013-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-CN-6013-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-CN-6013-01	KRT4	ENST00000458244.2,ENST00000548097.1,ENST00000293774.4,ENST00000551956.1	chr12	53201142:53201177:53201427:53201648:53202077:53202194,	53201428	53201648	53201525	53201525	Nonsense_Mutation	G	A	p.R491*
HNSC	TCGA-CN-4728-01	TIMELESS	ENST00000553532.1,ENST00000229201.4,ENST00000554616.1	chr12	56814746:56814918:56815134:56815277:56815510:56815593,	56815135	56815277	56815188	56815188	Nonsense_Mutation	C	A	p.E938*
HNSC	TCGA-BA-6870-01	PTPRT	ENST00000373198.4,ENST00000373187.1,ENST00000356100.2,ENST00000373193.3,ENST00000373201.1,ENST00000373184.1,ENST00000373190.1	chr20	41076859:41076969:41100905:41101202:41306505:41306799,	41100906	41101202	41101056	41101056	Nonsense_Mutation	G	A	p.Q434*
HNSC	TCGA-T2-A6X2-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71501391:71501472:71508359:71508440,	71501392	71501472	71501416	71501416	Nonsense_Mutation	C	T	p.Q147*
HNSC	TCGA-T2-A6X2-01	CDKL3	ENST00000519312.1	chr5	133642299:133642393:133643828:133644157:133647982:133648071,	133643829	133644157	133644119	133644119	Nonsense_Mutation	G	A	p.Q42*
HNSC	TCGA-T2-A6X2-01	SPRED1	ENST00000299084.4	chr15	38616963:38617010:38631937:38632096:38641622:38641724,	38631938	38632096	38632026	38632026	Nonsense_Mutation	C	G	p.S171*
HNSC	TCGA-T2-A6X2-01	TMEM138	ENST00000534963.1,ENST00000545420.1	chr11	61131723:61131787:61131904:61131990:61133516:61133688,	61131905	61131990	61131945	61131945	Nonsense_Mutation	C	G	p.S28*
HNSC	TCGA-T2-A6X2-01	TMEM138	ENST00000542946.1,ENST00000507563.2,ENST00000540194.1	chr11	61129858:61129892:61131723:61131990:61133516:61133688,	61131724	61131990	61131945	61131945	Nonsense_Mutation	C	G	p.S28*
HNSC	TCGA-T2-A6X2-01	CLEC2D	ENST00000261340.7,ENST00000430909.1	chr12	9845423:9845527:9845629:9845711:9847355:9847397,	9845630	9845711	9845688	9845688	Nonsense_Mutation	C	T	p.R174*
HNSC	TCGA-T2-A6X2-01	CLEC2D	ENST00000479877.1	chr12	9840497:9840682:9845423:9846544:9847355:9847397,	9845424	9846544	9845688	9845688	Nonsense_Mutation	C	T	p.R174*
HNSC	TCGA-T2-A6X2-01	SEL1L3	ENST00000399878.3,ENST00000510448.1,ENST00000264868.5,ENST00000502949.1	chr4	25759309:25759412:25760562:25760690:25766947:25766982,	25760563	25760690	25760611	25760611	Nonsense_Mutation	G	C	p.S1012*
HNSC	TCGA-T2-A6X2-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350644	89350644	Nonsense_Mutation	G	C	p.S769*
HNSC	TCGA-4P-AA8J-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574000	7574000	Nonsense_Mutation	C	A	p.E343*
HNSC	TCGA-4P-AA8J-01	EIF2AK1	ENST00000446699.1,ENST00000463213.1,ENST00000199389.6,ENST00000431744.1	chr7	6088437:6088475:6089542:6089676:6094176:6094266,	6089543	6089676	6089554	6089554	Nonsense_Mutation	T	A	p.R134*
HNSC	TCGA-CN-A497-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577142	7577142	Nonsense_Mutation	C	A	p.G266*
HNSC	TCGA-CN-A497-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176662821:176662946:176665237:176665508:176666756:176666866,	176665238	176665508	176665487	176665487	Nonsense_Mutation	G	T	p.E1391*
HNSC	TCGA-CN-A497-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91641814:91641956:91643562:91643642:91645442:91645581,	91643563	91643642	91643574	91643574	Nonsense_Mutation	A	T	p.K1194*
HNSC	TCGA-HD-A4C1-01	TBCD	ENST00000397466.2,ENST00000355528.4,ENST00000539345.2	chr17	80767583:80767658:80772715:80772810:80828099:80828256,	80772716	80772810	80772798	80772798	Nonsense_Mutation	C	T	p.R436*
HNSC	TCGA-HD-A4C1-01	PCK2	ENST00000559250.1,ENST00000559503.1,ENST00000561286.1,ENST00000545054.2,ENST00000558096.1,ENST00000216780.4	chr14	24568766:24568929:24569203:24569422:24571961:24572039,	24569204	24569422	24569206	24569206	Nonsense_Mutation	C	T	p.R206*
HNSC	TCGA-HD-A4C1-01	SLC2A13	ENST00000380858.1	chr12	40422102:40422311:40441852:40442012:40499054:40499661,	40441853	40442012	40441950	40441950	Nonsense_Mutation	G	A	p.R207*
HNSC	TCGA-CQ-5324-01	PTDSS1	ENST00000337004.4,ENST00000518776.1,ENST00000517309.1,ENST00000522072.1,ENST00000455950.2	chr8	97307419:97307484:97311921:97312073:97316267:97316385,	97311922	97312073	97311963	97311963	Nonsense_Mutation	G	A	p.W214*
HNSC	TCGA-CQ-5324-01	MAP3K6	ENST00000493901.1,ENST00000357582.2,ENST00000470890.1,ENST00000374040.3	chr1	27681881:27681960:27682159:27682236:27682516:27682570,	27682160	27682236	27682188	27682188	Nonsense_Mutation	G	A	p.R1254*
HNSC	TCGA-CQ-5324-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29654516:29654857:29657313:29657516:29661855:29662049,	29657314	29657516	29657375	29657375	Nonsense_Mutation	C	T	p.Q1891*
HNSC	TCGA-CV-7238-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924339	150924339	Nonsense_Mutation	G	A	p.R2117*
HNSC	TCGA-CV-7238-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
HNSC	TCGA-F7-A50I-01	STX17	ENST00000525640.1,ENST00000534052.1,ENST00000525847.1,ENST00000259400.6	chr9	102722198:102722314:102722386:102722437:102729934:102730021,	102722387	102722437	102722405	102722405	Nonsense_Mutation	C	T	p.Q184*
HNSC	TCGA-F7-A50I-01	EPB41L2	ENST00000529208.1,ENST00000527411.1	chr6	131188598:131188721:131190702:131191266:131199243:131199354,131188598:131188721:131190702:131191266:131206235:131206408,	131190703	131191266	131190864	131190864	Nonsense_Mutation	C	A	p.E816*
HNSC	TCGA-F7-A61S-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187538955	187538955	Nonsense_Mutation	C	A	p.E2929*
HNSC	TCGA-F7-A61S-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-F7-A61S-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-F7-A61S-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98232094:98232213:98238315:98238441:98239040:98239139,	98238316	98238441	98238420	98238420	Nonsense_Mutation	T	A	p.K476*
HNSC	TCGA-CV-A45U-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
HNSC	TCGA-CV-A45U-01	IRF6	ENST00000542854.1,ENST00000367021.3	chr1	209963011:209963130:209963839:209964232:209965613:209965772,	209963840	209964232	209964161	209964161	Nonsense_Mutation	G	A	p.Q247*
HNSC	TCGA-CV-A45U-01	TWSG1	ENST00000262120.5	chr18	9359969:9360069:9396277:9396544:9399343:9400815,	9396278	9396544	9396466	9396466	Nonsense_Mutation	G	T	p.E138*
HNSC	TCGA-CV-A45U-01	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66466876:66467079:66467996:66468753:66469054:66469192,	66467997	66468753	66468476	66468476	Nonsense_Mutation	G	A	p.Q1032*
HNSC	TCGA-CV-A45U-01	DLST	ENST00000334212.6,ENST00000238671.7,ENST00000554806.1,ENST00000334220.4,ENST00000554612.1,ENST00000555089.1,ENST00000555190.1	chr14	75360050:75360127:75361014:75361112:75365071:75365158,	75361015	75361112	75361060	75361060	Nonsense_Mutation	G	T	p.E240*
HNSC	TCGA-CV-A45U-01	SLC38A1	ENST00000398637.5,ENST00000546893.1,ENST00000552197.1,ENST00000549049.1,ENST00000549633.1,ENST00000439706.1	chr12	46592510:46592526:46594880:46594981:46596792:46596872,	46594881	46594981	46594952	46594952	Nonsense_Mutation	G	C	p.S311*
HNSC	TCGA-CV-A45U-01	XRRA1	ENST00000527087.1	chr11	74574025:74574066:74617283:74617501:74618189:74618266,74563078:74563127:74617283:74617501:74618189:74618266,74562132:74562248:74617283:74617501:74618189:74618266,	74617284	74617501	74617424	74617424	Nonsense_Mutation	G	T	p.S280*
HNSC	TCGA-CV-A45U-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40946631:40946686:40946789:40947400:40947478:40947539,	40946790	40947400	40946994	40946994	Nonsense_Mutation	C	G	p.S852*
HNSC	TCGA-P3-A6T7-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086485	144086485	Nonsense_Mutation	C	G	p.S250*
HNSC	TCGA-BA-4076-01	SERPING1	ENST00000531797.1	chr11	57373880:57374020:57379189:57379409:57381800:57382002,57369517:57369642:57379189:57379409:57381800:57382002,	57379190	57379409	57379319	57379319	Nonsense_Mutation	G	T	p.E430*
HNSC	TCGA-BA-4076-01	SERPING1	ENST00000340687.6	chr11	57373880:57374020:57379300:57379409:57381800:57382002,	57379301	57379409	57379319	57379319	Nonsense_Mutation	G	T	p.E430*
HNSC	TCGA-BA-4076-01	NAALAD2	ENST00000534061.1	chr11	89891312:89891406:89892406:89892505:89896116:89896202,	89892407	89892505	89892474	89892474	Nonsense_Mutation	G	T	p.G320*
HNSC	TCGA-BA-4076-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510646	169510646	Nonsense_Mutation	G	A	p.Q1233*
HNSC	TCGA-BA-4076-01	DNAH5	ENST00000265104.4	chr5	13735239:13735430:13735926:13736041:13737360:13737604,	13735927	13736041	13735961	13735961	Nonsense_Mutation	G	A	p.Q3846*
HNSC	TCGA-BA-4076-01	HIPK3	ENST00000525975.1,ENST00000303296.4,ENST00000456517.1,ENST00000379016.3	chr11	33350145:33350179:33358620:33358740:33360302:33360388,	33358621	33358740	33358705	33358705	Nonsense_Mutation	G	T	p.E436*
HNSC	TCGA-BA-4076-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507186	74507186	Nonsense_Mutation	C	A	p.E477*
HNSC	TCGA-BA-4076-01	KIAA1217	ENST00000376451.2,ENST00000438429.1,ENST00000396446.1,ENST00000307544.6,ENST00000376452.3,ENST00000376456.4,ENST00000376462.1,ENST00000376454.3,ENST00000458595.1,ENST00000396445.1	chr10	24790307:24790474:24802187:24802363:24809051:24809182,	24802188	24802363	24802317	24802317	Nonsense_Mutation	A	T	p.R394*
HNSC	TCGA-BA-5557-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578247	7578247	Nonsense_Mutation	A	T	p.L201*
HNSC	TCGA-CN-4739-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90857472	90857472	Nonsense_Mutation	A	T	p.K881*
HNSC	TCGA-CN-4739-01	ST3GAL3	ENST00000361400.4,ENST00000335430.6,ENST00000351035.3	chr1	44173313:44173364:44201903:44202051:44257772:44257820,44173313:44173364:44201903:44202051:44280562:44280605,	44201904	44202051	44201937	44201937	Nonsense_Mutation	G	T	p.G2*
HNSC	TCGA-CN-4739-01	ST3GAL3	ENST00000545417.1,ENST00000347631.2,ENST00000262915.3,ENST00000461066.2	chr1	44173313:44173364:44201903:44202096:44257772:44257820,	44201904	44202096	44201937	44201937	Nonsense_Mutation	G	T	p.G2*
HNSC	TCGA-CV-6952-01	RNGTT	ENST00000369475.3,ENST00000265607.6	chr6	89638882:89638986:89650789:89650899:89673064:89673280,	89650790	89650899	89650812	89650812	Nonsense_Mutation	G	C	p.S51*
HNSC	TCGA-CV-6952-01	AMHR2	ENST00000550311.1	chr12	53823236:53823409:53823614:53823762:53823929:53824066,53823236:53823409:53823614:53823762:53823933:53824066,	53823615	53823762	53823690	53823690	Nonsense_Mutation	C	T	p.R406*
HNSC	TCGA-CV-6952-01	CLPB	ENST00000544382.1,ENST00000437826.2,ENST00000535990.1,ENST00000535477.1,ENST00000538039.1,ENST00000340729.5,ENST00000543042.1,ENST00000294053.3	chr11	72012846:72013008:72013347:72013392:72018242:72018298,	72013348	72013392	72013356	72013356	Nonsense_Mutation	G	A	p.R417*
HNSC	TCGA-CV-7424-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
HNSC	TCGA-CV-7424-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-7424-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-7424-01	ING5	ENST00000492488.1,ENST00000482774.1,ENST00000406941.1,ENST00000313552.6,ENST00000489509.1	chr2	242648630:242648797:242650791:242650903:242651392:242651486,	242650792	242650903	242650891	242650891	Nonsense_Mutation	C	T	p.R126*
HNSC	TCGA-CV-7424-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22804524	22804524	Nonsense_Mutation	G	A	p.Q1120*
HNSC	TCGA-CV-7424-01	FBXO25	ENST00000382824.1,ENST00000352684.2	chr8	363072:363213:381340:381444:385614:385700,	381341	381444	381402	381402	Nonsense_Mutation	A	T	p.K66*
HNSC	TCGA-IQ-A61L-01	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4,ENST00000417380.2	chr6	88313101:88313246:88315634:88315739:88317390:88317542,	88315635	88315739	88315721	88315721	Nonsense_Mutation	C	T	p.Q137*
HNSC	TCGA-F7-7848-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533290	94533290	Nonsense_Mutation	G	T	p.E312*
HNSC	TCGA-F7-7848-01	SLC39A10	ENST00000465851.1,ENST00000409086.3,ENST00000541054.1,ENST00000430412.1,ENST00000359634.5	chr2	196573379:196573568:196578156:196578277:196581360:196581729,	196578157	196578277	196578254	196578254	Nonsense_Mutation	G	A	p.W558*
HNSC	TCGA-UF-A7J9-01	CCDC136	ENST00000378685.4	chr7	128434747:128434822:128441239:128441527:128444703:128444815,	128441240	128441527	128441260	128441260	Nonsense_Mutation	G	T	p.E123*
HNSC	TCGA-UF-A7J9-01	CCDC136	ENST00000464832.1,ENST00000487361.1,ENST00000297788.4	chr7	128434747:128434822:128441239:128441563:128444703:128444815,	128441240	128441563	128441260	128441260	Nonsense_Mutation	G	T	p.E123*
HNSC	TCGA-UF-A7J9-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559487	210559487	Nonsense_Mutation	G	T	p.E865*
HNSC	TCGA-UF-A7J9-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559487	210559487	Nonsense_Mutation	G	T	p.E865*
HNSC	TCGA-UF-A7J9-01	ZBP1	ENST00000343535.4,ENST00000371173.3,ENST00000340462.4,ENST00000395822.3	chr20	56185204:56185423:56186782:56186986:56188218:56188386,	56186783	56186986	56186819	56186819	Nonsense_Mutation	C	A	p.E257*
HNSC	TCGA-CQ-6221-01	HSPA4	ENST00000304858.2	chr5	132425316:132425387:132426884:132427066:132428391:132428481,	132426885	132427066	132427046	132427046	Nonsense_Mutation	C	T	p.Q514*
HNSC	TCGA-CQ-6221-01	CELSR2	ENST00000271332.3	chr1	109810169:109810264:109810472:109810682:109811202:109811386,	109810473	109810682	109810498	109810498	Nonsense_Mutation	C	G	p.S2045*
HNSC	TCGA-CQ-6221-01	DHRS13	ENST00000394901.3,ENST00000378895.4	chr17	27225840:27225910:27228007:27228319:27228510:27228634,	27228008	27228319	27228113	27228113	Nonsense_Mutation	C	A	p.E143*
HNSC	TCGA-D6-8569-01	FAM172A	ENST00000502503.1,ENST00000511139.1,ENST00000509163.1,ENST00000505869.1,ENST00000395965.3,ENST00000509739.1	chr5	93111864:93111949:93120088:93120205:93159853:93159960,	93120089	93120205	93120106	93120106	Nonsense_Mutation	G	A	p.R336*
HNSC	TCGA-CV-6436-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
HNSC	TCGA-CV-6436-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
HNSC	TCGA-F7-A50G-01	GRN	ENST00000053867.3,ENST00000586782.1,ENST00000589265.1,ENST00000592783.1,ENST00000591740.1,ENST00000587518.1,ENST00000588143.1,ENST00000593167.1	chr17	42426793:42426919:42427034:42427119:42427595:42427651,	42427035	42427119	42427098	42427098	Nonsense_Mutation	C	T	p.R110*
HNSC	TCGA-F7-A50G-01	GRN	ENST00000587387.1	chr17	42426793:42426919:42426992:42427119:42427595:42427651,	42426993	42427119	42427098	42427098	Nonsense_Mutation	C	T	p.R110*
HNSC	TCGA-QK-A8ZA-01	HFM1	ENST00000370425.3,ENST00000488023.1,ENST00000481900.1,ENST00000294696.5,ENST00000455133.1	chr1	91859729:91859959:91861849:91861962:91866568:91866666,	91861850	91861962	91861942	91861942	Nonsense_Mutation	G	T	p.S31*
HNSC	TCGA-QK-A8ZA-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367685	66367685	Nonsense_Mutation	G	A	p.R117*
HNSC	TCGA-QK-A8ZA-01	C8orf34	ENST00000325233.3	chr8	69445254:69445384:69552610:69552746:69621228:69621314,69537693:69537890:69552610:69552746:69621228:69621314,	69552611	69552746	69552706	69552706	Nonsense_Mutation	C	T	p.Q290*
HNSC	TCGA-CR-7370-01	C12orf50	ENST00000298699.2	chr12	88380088:88380193:88381626:88381743:88383040:88383148,	88381627	88381743	88381702	88381702	Nonsense_Mutation	G	A	p.R248*
HNSC	TCGA-CR-7370-01	PLSCR4	ENST00000446574.2,ENST00000354952.2,ENST00000460350.1,ENST00000493382.1	chr3	145914492:145914580:145917599:145917826:145918821:145918864,	145917600	145917826	145917674	145917674	Nonsense_Mutation	G	A	p.R184*
HNSC	TCGA-CR-7370-01	LYN	ENST00000520220.2,ENST00000519728.1	chr8	56866390:56866543:56879273:56879456:56882275:56882352,	56879274	56879456	56879420	56879420	Nonsense_Mutation	G	T	p.E292*
HNSC	TCGA-CR-7370-01	LAIR2	ENST00000351841.2	chr19	55014915:55014951:55019105:55019399:55021735:55021897,	55019106	55019399	55019222	55019222	Nonsense_Mutation	G	T	p.E63*
HNSC	TCGA-CR-7370-01	PPM1A	ENST00000532036.2,ENST00000529574.1,ENST00000531143.2,ENST00000325642.3,ENST00000395076.4	chr14	60752341:60752459:60756523:60756632:60758114:60758172,	60756524	60756632	60756619	60756619	Nonsense_Mutation	G	T	p.E350*
HNSC	TCGA-CR-7370-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160255339:160255405:160257109:160257175:160261359:160261421,	160257110	160257175	160257124	160257124	Nonsense_Mutation	G	A	p.Q962*
HNSC	TCGA-CR-7370-01	CYP46A1	ENST00000261835.3	chr14	100150650:100150873:100157417:100157498:100158116:100158198,	100157418	100157498	100157458	100157458	Nonsense_Mutation	G	T	p.E54*
HNSC	TCGA-CR-7370-01	SLC28A2	ENST00000347644.3	chr15	45559863:45559994:45560407:45560576:45561535:45561733,	45560408	45560576	45560574	45560574	Nonsense_Mutation	C	T	p.Q456*
HNSC	TCGA-CN-A6V3-01	DMD	ENST00000288447.4,ENST00000357033.4,ENST00000378677.2	chrX	32663080:32663269:32715986:32716115:32717228:32717410,	32715987	32716115	32716089	32716089	Nonsense_Mutation	A	T	p.Y286*
HNSC	TCGA-CN-A6V3-01	SMURF2	ENST00000582081.1,ENST00000585301.1,ENST00000262435.9	chr17	62579578:62579662:62582203:62582288:62587201:62587262,	62582204	62582288	62582256	62582256	Nonsense_Mutation	C	A	p.G145*
HNSC	TCGA-CN-A6V3-01	TNKS1BP1	ENST00000528882.1	chr11	57085291:57085361:57087538:57088186:57089265:57089424,	57087539	57088186	57087950	57087950	Nonsense_Mutation	C	A	p.G111*
HNSC	TCGA-CN-A6V3-01	TNKS1BP1	ENST00000532437.1,ENST00000358252.3	chr11	57085291:57085361:57087552:57088186:57089265:57089424,	57087553	57088186	57087950	57087950	Nonsense_Mutation	C	A	p.G111*
HNSC	TCGA-CN-A6V3-01	TINAGL1	ENST00000461030.1	chr1	32042734:32043059:32048749:32049176:32050278:32050402,32044804:32044868:32048749:32049176:32050278:32050402,	32048750	32049176	32049108	32049108	Nonsense_Mutation	G	T	p.E172*
HNSC	TCGA-CN-A6V3-01	TINAGL1	ENST00000468635.1,ENST00000478398.1,ENST00000498429.1,ENST00000271064.7	chr1	32044804:32044868:32049061:32049176:32050278:32050402,32048749:32048842:32049061:32049176:32050278:32050402,	32049062	32049176	32049108	32049108	Nonsense_Mutation	G	T	p.E172*
HNSC	TCGA-CN-A6V3-01	GIPC2	ENST00000370759.3	chr1	78511585:78512018:78546358:78546544:78560635:78560816,	78546359	78546544	78546488	78546488	Nonsense_Mutation	G	T	p.E124*
HNSC	TCGA-CN-A6V3-01	ABL1	ENST00000318560.5,ENST00000372348.2	chr9	133730187:133730483:133738149:133738422:133747515:133747600,	133738150	133738422	133738189	133738189	Nonsense_Mutation	G	T	p.E197*
HNSC	TCGA-TN-A7HI-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291481	140291481	Nonsense_Mutation	C	T	p.Q624*
HNSC	TCGA-TN-A7HI-01	SETD7	ENST00000506866.2,ENST00000274031.3	chr4	140439038:140439196:140441430:140441548:140444507:140444589,	140441431	140441548	140441448	140441448	Nonsense_Mutation	G	A	p.R249*
HNSC	TCGA-BA-5555-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637762	176637762	Nonsense_Mutation	C	T	p.R788*
HNSC	TCGA-BA-5555-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000437809.1,ENST00000466224.1,ENST00000361040.5,ENST00000271883.5	chr1	155746185:155746272:155747412:155747611:155753776:155753880,	155747413	155747611	155747430	155747430	Nonsense_Mutation	G	A	p.Q692*
HNSC	TCGA-QK-A8Z9-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100081	168100081	Nonsense_Mutation	G	T	p.G727*
HNSC	TCGA-QK-A8Z9-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821155	97821155	Nonsense_Mutation	G	T	p.E460*
HNSC	TCGA-QK-A8Z9-01	SLC25A21	ENST00000331299.5,ENST00000555449.1	chr14	37153032:37153085:37153948:37154130:37180522:37180687,	37153949	37154130	37153953	37153953	Nonsense_Mutation	C	A	p.E261*
HNSC	TCGA-QK-A8Z9-01	INO80	ENST00000558357.1	chr15	41308285:41308413:41313097:41313323:41319793:41319797,41297790:41297885:41313097:41313323:41319793:41319797,	41313098	41313323	41313173	41313173	Nonsense_Mutation	G	A	p.Q1067*
HNSC	TCGA-QK-A8Z9-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041489	86041489	Nonsense_Mutation	A	T	p.K481*
HNSC	TCGA-DQ-7588-01	NRBP1	ENST00000460499.1,ENST00000379852.3,ENST00000233557.3,ENST00000379863.3	chr2	27660128:27660227:27662632:27662765:27663269:27663375,	27662633	27662765	27662654	27662654	Nonsense_Mutation	C	T	p.Q309*
HNSC	TCGA-DQ-7588-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000439170.2,ENST00000460856.1	chr3	124065989:124066112:124103691:124103883:124113981:124114151,	124103692	124103883	124103785	124103785	Nonsense_Mutation	C	T	p.R620*
HNSC	TCGA-DQ-7588-01	PLEKHA5	ENST00000355397.3,ENST00000539256.1,ENST00000299275.6,ENST00000538714.1	chr12	19498775:19498822:19501332:19501453:19506817:19506936,	19501333	19501453	19501415	19501415	Nonsense_Mutation	C	A	p.S886*
HNSC	TCGA-CV-6943-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-6943-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-6943-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539417	187539417	Nonsense_Mutation	G	A	p.Q2775*
HNSC	TCGA-CV-7407-01	PSMB4	ENST00000290541.6	chr1	151373239:151373321:151373714:151373831:151374017:151374106,	151373715	151373831	151373789	151373789	Nonsense_Mutation	C	A	p.C217*
HNSC	TCGA-CV-7407-01	CUX1	ENST00000292538.4,ENST00000497815.1,ENST00000360264.3,ENST00000425244.2	chr7	101460919:101460949:101559394:101559505:101671377:101671425,101459300:101459373:101559394:101559505:101671377:101671425,	101559395	101559505	101559503	101559503	Nonsense_Mutation	G	T	p.E58*
HNSC	TCGA-CV-6940-01	SPOCK3	ENST00000507370.1,ENST00000541354.1,ENST00000421836.2,ENST00000511269.1,ENST00000504953.1,ENST00000511905.1,ENST00000534949.1,ENST00000505187.1,ENST00000502821.1,ENST00000511531.1,ENST00000512681.1,ENST00000357154.3,ENST00000502330.1,ENST00000357545.4,ENST00000506886.1,ENST00000507137.1,ENST00000541637.1	chr4	167663147:167663210:167675658:167675880:167713320:167713440,	167675659	167675880	167675844	167675844	Nonsense_Mutation	G	C	p.S252*
HNSC	TCGA-CV-6940-01	PCCA	ENST00000443601.1,ENST00000376285.1,ENST00000376279.3,ENST00000376286.4	chr13	100962086:100962162:100982814:100982925:100992410:100992513,	100982815	100982925	100982841	100982841	Nonsense_Mutation	C	T	p.R486*
HNSC	TCGA-T2-A6WX-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350234	89350234	Nonsense_Mutation	G	A	p.R906*
HNSC	TCGA-T2-A6WX-01	CDH18	ENST00000382275.1,ENST00000507958.1,ENST00000274170.4	chr5	19473723:19473825:19483409:19483661:19503100:19503218,	19483410	19483661	19483611	19483611	Nonsense_Mutation	G	A	p.Q561*
HNSC	TCGA-CV-6956-01	ALKBH1	ENST00000216489.3	chr14	78146227:78146313:78161080:78161243:78170711:78170795,	78161081	78161243	78161201	78161201	Nonsense_Mutation	C	T	p.W112*
HNSC	TCGA-CV-6956-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709523	176709523	Nonsense_Mutation	C	T	p.R1984*
HNSC	TCGA-D6-6515-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-D6-6515-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-7178-01	EPS8L3	ENST00000361965.4,ENST00000369805.3	chr1	110294380:110294404:110294616:110294815:110295307:110295342,	110294617	110294815	110294748	110294748	Nonsense_Mutation	G	A	p.Q436*
HNSC	TCGA-CV-7178-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539638	120539638	Nonsense_Mutation	C	A	p.E245*
HNSC	TCGA-CN-6012-01	CETN3	ENST00000283122.3	chr5	89689749:89689924:89695174:89695366:89701501:89701616,	89695175	89695366	89695349	89695349	Nonsense_Mutation	C	A	p.E96*
HNSC	TCGA-CN-6012-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-CN-6012-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
HNSC	TCGA-CN-6012-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539227	187539227	Nonsense_Mutation	G	T	p.S2838*
HNSC	TCGA-IQ-A61H-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65350805	65350805	Nonsense_Mutation	G	T	p.E888*
HNSC	TCGA-IQ-A61H-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
HNSC	TCGA-IQ-A61H-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65349860	65349860	Nonsense_Mutation	G	T	p.E573*
HNSC	TCGA-CV-6951-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133898695	133898695	Nonsense_Mutation	G	T	p.E360*
HNSC	TCGA-CV-6951-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118331	58118331	Nonsense_Mutation	C	T	p.R480*
HNSC	TCGA-CV-6951-01	NME9	ENST00000536478.1,ENST00000333911.3,ENST00000317876.4,ENST00000341790.5,ENST00000383180.2,ENST00000484930.1	chr3	138022348:138022485:138023714:138023869:138024845:138024938,	138023715	138023869	138023770	138023770	Nonsense_Mutation	G	A	p.R185*
HNSC	TCGA-CV-6951-01	PTCH1	ENST00000331920.6,ENST00000375290.2,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375274.2	chr9	98239040:98239139:98239828:98239984:98240336:98240468,	98239829	98239984	98239882	98239882	Nonsense_Mutation	C	A	p.G418*
HNSC	TCGA-CV-6951-01	GRTP1	ENST00000375430.4,ENST00000375431.4	chr13	114005163:114005288:114009637:114009796:114018076:114018225,	114009638	114009796	114009696	114009696	Nonsense_Mutation	G	C	p.Y94*
HNSC	TCGA-CV-A45R-01	AP1G1	ENST00000423132.2,ENST00000565009.1,ENST00000450149.2,ENST00000393512.3	chr16	71808439:71808495:71823181:71823385:71841917:71842053,71808439:71808495:71823181:71823385:71842665:71842716,	71823182	71823385	71823313	71823313	Nonsense_Mutation	G	A	p.R24*
HNSC	TCGA-P3-A6T6-01	HLA-C	ENST00000376237.4	chr6	31238215:31238262:31238849:31239108:31239375:31239533,	31238850	31239108	31238976	31238976	Nonsense_Mutation	G	A	p.Q165*
HNSC	TCGA-P3-A6T6-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000495835.1,ENST00000415537.1	chr6	31238215:31238262:31238849:31239125:31239375:31239533,	31238850	31239125	31238976	31238976	Nonsense_Mutation	G	A	p.Q165*
HNSC	TCGA-P3-A6T6-01	IL12RB2	ENST00000465396.1,ENST00000262345.1,ENST00000544434.1	chr1	67852261:67852352:67855711:67855811:67861229:67861446,	67855712	67855811	67855743	67855743	Nonsense_Mutation	C	T	p.Q660*
HNSC	TCGA-P3-A6T6-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675230	176675230	Nonsense_Mutation	G	T	p.E1516*
HNSC	TCGA-CR-7402-01	NCR1	ENST00000338835.5,ENST00000447255.1,ENST00000594765.1	chr19	55417545:55417579:55417656:55417692:55417880:55418165,	55417657	55417692	55417664	55417664	Nonsense_Mutation	T	A	p.C14*
HNSC	TCGA-CR-7402-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709538	176709538	Nonsense_Mutation	C	T	p.Q1989*
HNSC	TCGA-CR-7402-01	RTN4IP1	ENST00000539449.1,ENST00000369063.3	chr6	107067076:107067201:107069299:107069368:107070692:107070844,	107069300	107069368	107069363	107069363	Nonsense_Mutation	C	T	p.W144*
HNSC	TCGA-CR-7402-01	PRKAB1	ENST00000229328.5,ENST00000545223.1,ENST00000545870.1,ENST00000541640.1,ENST00000540121.1	chr12	120112144:120112259:120114341:120114475:120117737:120117756,	120114342	120114475	120114377	120114377	Nonsense_Mutation	G	T	p.E190*
HNSC	TCGA-CR-7402-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527424	115527424	Nonsense_Mutation	A	T	p.K880*
HNSC	TCGA-CR-7402-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1017714	1017714	Nonsense_Mutation	G	T	p.S1696*
HNSC	TCGA-CR-7402-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729807	78729807	Nonsense_Mutation	G	C	p.S704*
HNSC	TCGA-CR-7402-01	ZNF385D	ENST00000281523.2	chr3	21552352:21552515:21606065:21606176:21706377:21706520,	21606066	21606176	21606087	21606087	Nonsense_Mutation	G	T	p.C85*
HNSC	TCGA-CR-7402-01	ADAM19	ENST00000257527.4,ENST00000517905.1,ENST00000517951.1,ENST00000430702.2,ENST00000394020.1	chr5	156926580:156926670:156929810:156929988:156932676:156932816,	156929811	156929988	156929850	156929850	Nonsense_Mutation	A	T	p.Y423*
HNSC	TCGA-CR-7402-01	SPAG8	ENST00000475644.1	chr9	35808127:35808303:35809400:35810306:35810435:35810537,	35809401	35810306	35809452	35809452	Nonsense_Mutation	C	A	p.E441*
HNSC	TCGA-CR-7402-01	SPAG8	ENST00000340291.2	chr9	35808127:35808303:35809400:35809509:35810243:35810288,	35809401	35809509	35809452	35809452	Nonsense_Mutation	C	A	p.E441*
HNSC	TCGA-HD-A6HZ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
HNSC	TCGA-HD-A6HZ-01	SIGLEC10	ENST00000339313.5,ENST00000356298.5,ENST00000357375.4,ENST00000439889.2	chr19	51917675:51917769:51918077:51918362:51918434:51918613,	51918078	51918362	51918188	51918188	Nonsense_Mutation	C	T	p.W502*
HNSC	TCGA-CN-6020-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466624	65466624	Nonsense_Mutation	C	T	p.R445*
HNSC	TCGA-CN-6020-01	GNB1L	ENST00000403325.1,ENST00000329517.6,ENST00000405009.1	chr22	19799817:19799970:19808120:19808246:19808750:19808898,	19808121	19808246	19808242	19808242	Nonsense_Mutation	G	A	p.Q45*
HNSC	TCGA-CN-6020-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000565474.1,ENST00000447066.2	chr16	74530526:74530542:74537428:74537644:74542736:74542823,	74537429	74537644	74537551	74537551	Nonsense_Mutation	G	A	p.Q218*
HNSC	TCGA-CN-6020-01	CPSF1	ENST00000349769.3	chr8	145621562:145621715:145621812:145621956:145622054:145622144,	145621813	145621956	145621932	145621932	Nonsense_Mutation	C	A	p.E903*
HNSC	TCGA-CV-6936-01	SENP6	ENST00000370010.2,ENST00000327284.8	chr6	76343419:76343442:76344422:76344527:76357446:76357517,	76344423	76344527	76344433	76344433	Nonsense_Mutation	C	T	p.Q122*
HNSC	TCGA-CV-6936-01	PARP12	ENST00000473341.1,ENST00000263549.3,ENST00000496624.1,ENST00000488726.1	chr7	139726003:139726148:139727075:139727206:139728412:139728488,	139727076	139727206	139727113	139727113	Nonsense_Mutation	G	A	p.R531*
HNSC	TCGA-CV-7263-01	VPS4B	ENST00000238497.5,ENST00000591475.1	chr18	61070939:61071059:61074664:61074732:61077522:61077679,	61074665	61074732	61074674	61074674	Nonsense_Mutation	G	A	p.Q119*
HNSC	TCGA-CV-7263-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579378	7579378	Nonsense_Mutation	G	C	p.Y103*
HNSC	TCGA-CV-7263-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540845	187540845	Nonsense_Mutation	C	A	p.G2299*
HNSC	TCGA-T2-A6WZ-01	IPP	ENST00000396478.3	chr1	46206572:46207004:46211791:46212133:46216268:46216321,	46211792	46212133	46211901	46211901	Nonsense_Mutation	G	T	p.Y61*
HNSC	TCGA-T2-A6WZ-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32815699:32815869:32816428:32816617:32816766:32816895,	32816429	32816617	32816571	32816571	Nonsense_Mutation	G	C	p.S535*
HNSC	TCGA-CV-5436-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579521	7579521	Nonsense_Mutation	C	A	p.E56*
HNSC	TCGA-CV-5436-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951774	235951774	Nonsense_Mutation	C	A	p.C787*
HNSC	TCGA-CN-4723-01	CCT7	ENST00000258091.5,ENST00000399032.2,ENST00000539919.1,ENST00000469844.1,ENST00000461290.1	chr2	73467564:73467671:73470131:73470257:73471124:73471157,	73470132	73470257	73470151	73470151	Nonsense_Mutation	C	G	p.S52*
HNSC	TCGA-CN-4723-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470020	161470020	Nonsense_Mutation	C	G	p.S239*
HNSC	TCGA-CN-4723-01	COQ7	ENST00000568985.1,ENST00000544894.2,ENST00000321998.5,ENST00000569127.1	chr16	19083249:19083428:19087042:19087182:19088627:19088696,19085242:19085357:19087042:19087182:19088627:19088696,	19087043	19087182	19087180	19087180	Nonsense_Mutation	C	T	p.Q169*
HNSC	TCGA-CN-4723-01	KIF21A	ENST00000551264.1	chr12	39705218:39705355:39713707:39713815:39716469:39716684,	39713708	39713815	39713804	39713804	Nonsense_Mutation	G	C	p.S1228*
HNSC	TCGA-CN-4723-01	DNAL1	ENST00000554871.1,ENST00000553645.2,ENST00000555919.3,ENST00000540526.1,ENST00000555631.2	chr14	74121549:74121588:74125549:74125659:74128689:74128745,	74125550	74125659	74125577	74125577	Nonsense_Mutation	G	T	p.E24*
HNSC	TCGA-CN-4723-01	PACSIN2	ENST00000337959.4,ENST00000402229.1,ENST00000263246.3,ENST00000407585.1,ENST00000403744.3	chr22	43284648:43284804:43286952:43287188:43289462:43289619,	43286953	43287188	43287098	43287098	Nonsense_Mutation	G	T	p.S103*
HNSC	TCGA-CN-4723-01	UBXN1	ENST00000534176.1,ENST00000529640.1,ENST00000301935.5,ENST00000525717.1	chr11	62444084:62444111:62444284:62444477:62444989:62445031,	62444285	62444477	62444320	62444320	Nonsense_Mutation	G	C	p.S270*
HNSC	TCGA-CN-4723-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60088194	60088194	Nonsense_Mutation	G	A	p.Q562*
HNSC	TCGA-CN-4723-01	SKA3	ENST00000314759.5,ENST00000298260.4	chr13	21728835:21729289:21729831:21729950:21732060:21732264,	21729832	21729950	21729931	21729931	Nonsense_Mutation	G	C	p.S380*
HNSC	TCGA-CN-4723-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8	chr2	48698225:48698327:48698417:48698506:48701821:48701958,	48698418	48698506	48698496	48698496	Nonsense_Mutation	C	T	p.Q360*
HNSC	TCGA-CN-4723-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104053849:104054053:104054851:104055049:104057297:104057516,	104054852	104055049	104054926	104054926	Nonsense_Mutation	G	A	p.Q2216*
HNSC	TCGA-CN-4723-01	HMGA1	ENST00000311487.5,ENST00000447654.1,ENST00000395004.3	chr6	34204980:34205094:34208513:34208692:34210488:34210555,	34208514	34208692	34208574	34208574	Nonsense_Mutation	C	A	p.S6*
HNSC	TCGA-CN-4723-01	HMGA1	ENST00000401473.3,ENST00000478214.1	chr6	34204980:34205094:34208513:34208659:34210488:34210555,	34208514	34208659	34208574	34208574	Nonsense_Mutation	C	A	p.S6*
HNSC	TCGA-CN-4723-01	MTA2	ENST00000524902.1,ENST00000278823.2,ENST00000527204.1	chr11	62363929:62364004:62364108:62364297:62364787:62364885,	62364109	62364297	62364201	62364201	Nonsense_Mutation	C	A	p.E264*
HNSC	TCGA-CN-4723-01	RFX6	ENST00000487683.1,ENST00000332958.2,ENST00000471966.1	chr6	117216342:117216370:117232097:117232205:117237170:117237248,	117232098	117232205	117232167	117232167	Nonsense_Mutation	C	T	p.Q248*
HNSC	TCGA-CN-4723-01	DNAH7	ENST00000312428.6	chr2	196659061:196659262:196661299:196661461:196664019:196664196,	196661300	196661461	196661353	196661353	Nonsense_Mutation	G	A	p.Q3488*
HNSC	TCGA-CN-4723-01	L3MBTL3	ENST00000526019.1,ENST00000533560.1,ENST00000529410.1,ENST00000361794.2,ENST00000368139.2,ENST00000368136.2	chr6	130415409:130415512:130425570:130425720:130442023:130442103,	130425571	130425720	130425591	130425591	Nonsense_Mutation	C	G	p.S586*
HNSC	TCGA-CN-4723-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40572144:40572312:40574250:40574471:40578033:40578200,	40574251	40574471	40574319	40574319	Nonsense_Mutation	G	C	p.S1506*
HNSC	TCGA-CN-4723-01	RNF17	ENST00000381921.1,ENST00000255324.5,ENST00000339524.3	chr13	25444708:25444877:25448251:25448387:25451134:25451324,	25448252	25448387	25448363	25448363	Nonsense_Mutation	C	A	p.S1520*
HNSC	TCGA-CN-4723-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CN-4723-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CN-4723-01	DNAH9	ENST00000608377.1,ENST00000396001.2,ENST00000262442.4	chr17	11833182:11833410:11835330:11835522:11837196:11837388,	11835331	11835522	11835355	11835355	Nonsense_Mutation	G	T	p.E4044*
HNSC	TCGA-CN-4723-01	AGXT2	ENST00000231420.6,ENST00000512135.1	chr5	35003867:35003966:35010104:35010254:35025867:35025938,35003867:35003966:35010104:35010254:35013058:35013150,	35010105	35010254	35010167	35010167	Nonsense_Mutation	C	A	p.E426*
HNSC	TCGA-CN-4723-01	ATP13A3	ENST00000256031.4,ENST00000439040.1,ENST00000429136.1	chr3	194134542:194134568:194140607:194140696:194146070:194146099,	194140608	194140696	194140610	194140610	Nonsense_Mutation	G	A	p.Q1134*
HNSC	TCGA-CN-4723-01	MPI	ENST00000323744.6,ENST00000352410.4,ENST00000535694.1,ENST00000563786.1	chr15	75188492:75188666:75189351:75189560:75189852:75190176,	75189352	75189560	75189514	75189514	Nonsense_Mutation	C	G	p.S336*
HNSC	TCGA-CN-4723-01	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755896	153755896	Nonsense_Mutation	C	T	p.R210*
HNSC	TCGA-CN-4723-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9563375:9563548:9570154:9570681:9577061:9577189,	9570155	9570681	9570206	9570206	Nonsense_Mutation	C	A	p.E508*
HNSC	TCGA-CN-4723-01	UBAP2L	ENST00000456325.1	chr1	154193422:154193451:154197559:154197689:154199757:154199835,154193442:154193516:154197559:154197689:154199757:154199835,154193803:154193872:154197559:154197689:154199757:154199835,	154197560	154197689	154197669	154197669	Nonsense_Mutation	C	T	p.Q24*
HNSC	TCGA-CQ-6220-01	PPA1	ENST00000373232.3,ENST00000373230.5,ENST00000608321.1	chr10	71973218:71973345:71974255:71974342:71977567:71977687,	71974256	71974342	71974336	71974336	Nonsense_Mutation	C	A	p.E102*
HNSC	TCGA-CQ-6220-01	CPAMD8	ENST00000443236.1,ENST00000594249.1	chr19	17008699:17008805:17010285:17010360:17012019:17012107,	17010286	17010360	17010309	17010309	Nonsense_Mutation	G	A	p.R1656*
HNSC	TCGA-CN-4738-01	CA5B	ENST00000454127.2,ENST00000318636.3	chrX	15790618:15790737:15792424:15792520:15793368:15793431,	15792425	15792520	15792452	15792452	Nonsense_Mutation	A	T	p.R163*
HNSC	TCGA-CN-4738-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
HNSC	TCGA-UF-A7JA-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579485	7579485	Nonsense_Mutation	C	A	p.E68*
HNSC	TCGA-UF-A7JA-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789616	3789616	Nonsense_Mutation	G	A	p.Q1415*
HNSC	TCGA-UF-A7JA-01	CLPX	ENST00000558958.1,ENST00000300107.3,ENST00000559152.1	chr15	65454941:65454983:65456366:65456526:65458968:65459123,	65456367	65456526	65456381	65456381	Nonsense_Mutation	G	C	p.S220*
HNSC	TCGA-UF-A7JA-01	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751222	13751222	Nonsense_Mutation	G	A	p.Q3726*
HNSC	TCGA-CR-6481-01	PROM2	ENST00000487138.1,ENST00000431567.1,ENST00000403131.2,ENST00000317620.9,ENST00000317668.4,ENST00000542147.1	chr2	95952880:95952961:95953143:95953212:95953958:95954048,	95953144	95953212	95953210	95953210	Nonsense_Mutation	G	T	p.E748*
HNSC	TCGA-CR-6481-01	NONO	ENST00000276079.8,ENST00000535149.1,ENST00000373856.3,ENST00000373841.1,ENST00000471419.2	chrX	70511766:70511822:70514076:70514378:70516414:70516510,	70514077	70514378	70514197	70514197	Nonsense_Mutation	C	T	p.Q68*
HNSC	TCGA-CR-6481-01	ABLIM1	ENST00000533213.2,ENST00000369252.4,ENST00000369256.2,ENST00000392955.3,ENST00000277895.5	chr10	116211403:116211430:116213137:116213242:116225456:116225586,	116213138	116213242	116213165	116213165	Nonsense_Mutation	G	A	p.Q447*
HNSC	TCGA-CR-6481-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324665	31324665	Nonsense_Mutation	G	T	p.S48*
HNSC	TCGA-CR-6481-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324665	31324665	Nonsense_Mutation	G	T	p.S48*
HNSC	TCGA-CR-6481-01	GABRA3	ENST00000535043.1,ENST00000370314.4	chrX	151358201:151358413:151366104:151366257:151376472:151376616,	151366105	151366257	151366158	151366158	Nonsense_Mutation	G	C	p.S293*
HNSC	TCGA-CR-6481-01	CMPK1	ENST00000371871.4	chr1	47840580:47840657:47840868:47840965:47842375:47842795,47838626:47838779:47840868:47840965:47842375:47842795,	47840869	47840965	47840885	47840885	Nonsense_Mutation	C	T	p.Q189*
HNSC	TCGA-CR-6481-01	ZNF655	ENST00000454654.1,ENST00000425063.1	chr7	99158155:99158318:99159510:99159596:99169310:99169415,	99159511	99159596	99159525	99159525	Nonsense_Mutation	C	T	p.Q51*
HNSC	TCGA-CR-6481-01	ZNF655	ENST00000467680.1	chr7	99158155:99158318:99159510:99160117:99161485:99162328,	99159511	99160117	99159525	99159525	Nonsense_Mutation	C	T	p.Q51*
HNSC	TCGA-CR-6481-01	TRPM1	ENST00000557948.1,ENST00000558768.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31321573:31321594:31323185:31323360:31324891:31325020,	31323186	31323360	31323259	31323259	Nonsense_Mutation	C	T	p.W1035*
HNSC	TCGA-CR-6481-01	DNAJC1	ENST00000476103.1	chr10	22208831:22208858:22209726:22209892:22217434:22217481,22208831:22208858:22209726:22209892:22217968:22218070,	22209727	22209892	22209807	22209807	Nonsense_Mutation	C	A	p.E153*
HNSC	TCGA-CR-6481-01	ST13	ENST00000455824.1	chr22	41236629:41236696:41240842:41240913:41252434:41252620,	41240843	41240913	41240869	41240869	Nonsense_Mutation	G	A	p.Q97*
HNSC	TCGA-CR-6481-01	PPFIA3	ENST00000602351.1,ENST00000334186.4,ENST00000602655.1,ENST00000602848.1,ENST00000602905.1,ENST00000602897.1	chr19	49652513:49652582:49652803:49652975:49653336:49653408,	49652804	49652975	49652886	49652886	Nonsense_Mutation	C	G	p.S1146*
HNSC	TCGA-CR-6481-01	SDHC	ENST00000504963.1,ENST00000470743.3,ENST00000367975.2,ENST00000392169.2,ENST00000432287.2	chr1	161310383:161310445:161326466:161326630:161332118:161332223,	161326467	161326630	161326611	161326611	Nonsense_Mutation	G	A	p.W129*
HNSC	TCGA-CR-6487-01	RPP40	ENST00000380051.2,ENST00000464646.1,ENST00000319533.5	chr6	4996455:4996654:4998949:4999075:5000042:5000138,	4998950	4999075	4998960	4998960	Nonsense_Mutation	C	T	p.W183*
HNSC	TCGA-CR-6487-01	KMT2D	ENST00000547610.1	chr12	49448310:49448534:49448682:49448809:49449058:49449107,	49448683	49448809	49448693	49448693	Nonsense_Mutation	G	A	p.Q56*
HNSC	TCGA-CV-6962-01	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33197295:33197462:33199150:33199383:33200375:33200598,	33199151	33199383	33199209	33199209	Nonsense_Mutation	A	C	p.Y702*
HNSC	TCGA-CV-6962-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-6962-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-6962-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5,ENST00000342215.6	chr3	171427349:171427499:171431682:171431835:171442485:171442578,	171431683	171431835	171431702	171431702	Nonsense_Mutation	G	A	p.R298*
HNSC	TCGA-CV-A45O-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2	chr2	55899129:55899181:55900027:55900214:55906816:55906930,	55900028	55900214	55900074	55900074	Nonsense_Mutation	G	A	p.Q274*
HNSC	TCGA-CV-A45O-01	AFAP1L2	ENST00000304129.4,ENST00000545353.1,ENST00000369271.3	chr10	116064477:116064689:116067563:116067668:116068191:116068276,	116067564	116067668	116067594	116067594	Nonsense_Mutation	C	A	p.E348*
HNSC	TCGA-CV-A45O-01	ASCC3	ENST00000324696.4,ENST00000369162.2	chr6	101095163:101095327:101098413:101098590:101099435:101099522,	101098414	101098590	101098482	101098482	Nonsense_Mutation	G	A	p.Q1062*
HNSC	TCGA-CV-A45O-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580249	7580249	Nonsense_Mutation	C	T	p.Q1276*
HNSC	TCGA-CV-A45O-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764924	138764924	Nonsense_Mutation	G	A	p.Q255*
HNSC	TCGA-CV-A45O-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764924	138764924	Nonsense_Mutation	G	A	p.Q255*
HNSC	TCGA-CV-A45O-01	CASP8	ENST00000392258.3,ENST00000392266.3,ENST00000413726.1,ENST00000392259.2,ENST00000432109.2,ENST00000323492.7,ENST00000447616.1,ENST00000264274.9,ENST00000358485.4,ENST00000392263.2,ENST00000339403.6,ENST00000471383.1,ENST00000437283.1	chr2	202131209:202131514:202136238:202136344:202137360:202137448,	202136239	202136344	202136252	202136252	Nonsense_Mutation	C	T	p.Q166*
HNSC	TCGA-CV-A45O-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-A45O-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-A45O-01	GOLGA2	ENST00000609374.1,ENST00000462089.1,ENST00000421699.2	chr9	131021285:131021361:131021445:131021670:131022354:131022468,	131021446	131021670	131021583	131021583	Nonsense_Mutation	G	A	p.Q627*
HNSC	TCGA-CN-6021-01	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11236802:11236935:11346483:11346739:11364807:11365002,	11346484	11346739	11346593	11346593	Nonsense_Mutation	G	A	p.Q507*
HNSC	TCGA-CN-6021-01	FNBP1	ENST00000446176.2,ENST00000420781.1,ENST00000443566.2	chr9	132652663:132652825:132658116:132658275:132662243:132662380,	132658117	132658275	132658199	132658199	Nonsense_Mutation	C	T	p.W579*
HNSC	TCGA-CN-6021-01	ADAM28	ENST00000540823.1	chr8	24167675:24167754:24168873:24168950:24170900:24171093,24167675:24167754:24168873:24168950:24177748:24177820,	24168874	24168950	24168892	24168892	Nonsense_Mutation	G	T	p.G109*
HNSC	TCGA-CN-6021-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724466	112724466	Nonsense_Mutation	C	G	p.S117*
HNSC	TCGA-CN-6021-01	PRDM5	ENST00000506065.1,ENST00000264808.3,ENST00000428209.2	chr4	121616312:121616430:121631463:121631568:121698342:121698436,121616312:121616430:121631463:121631568:121675707:121675793,	121631464	121631568	121631548	121631548	Nonsense_Mutation	T	A	p.R489*
HNSC	TCGA-CR-6474-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83352779:83352856:83357044:83357206:83359506:83359665,	83357045	83357206	83357104	83357104	Nonsense_Mutation	G	A	p.R573*
HNSC	TCGA-CR-7385-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176683951:176684152:176686989:176687169:176694562:176694719,	176686990	176687169	176687121	176687121	Nonsense_Mutation	C	T	p.R1700*
HNSC	TCGA-CQ-5330-01	OBSL1	ENST00000604031.1	chr2	220421299:220421445:220422544:220422832:220423946:220424153,	220422545	220422832	220422717	220422717	Nonsense_Mutation	C	T	p.W1206*
HNSC	TCGA-CQ-6229-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-CV-A6K2-01	VPS36	ENST00000492650.1,ENST00000378060.4	chr13	53000066:53000201:53001123:53001201:53001321:53001354,	53001124	53001201	53001179	53001179	Nonsense_Mutation	G	C	p.S195*
HNSC	TCGA-CV-A6K2-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910587	29910587	Nonsense_Mutation	G	T	p.E43*
HNSC	TCGA-CV-A6K2-01	LAMP3	ENST00000466939.1,ENST00000265598.3	chr3	182858325:182858383:182870162:182870291:182871469:182872179,	182870163	182870291	182870195	182870195	Nonsense_Mutation	G	A	p.Q286*
HNSC	TCGA-CV-A6K2-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150004897	150004897	Nonsense_Mutation	G	C	p.S443*
HNSC	TCGA-CV-A6K2-01	MTX2	ENST00000452865.1	chr2	177193601:177193640:177194097:177194154:177195311:177195388,	177194098	177194154	177194099	177194099	Nonsense_Mutation	G	A	p.W153*
HNSC	TCGA-CV-A6K2-01	MTX2	ENST00000249442.6,ENST00000392529.2,ENST00000443241.1,ENST00000420864.1	chr2	177193601:177193640:177194028:177194154:177195311:177195388,	177194029	177194154	177194099	177194099	Nonsense_Mutation	G	A	p.W153*
HNSC	TCGA-CV-A6K2-01	YIPF3	ENST00000490447.2	chr6	43483343:43483439:43483626:43483928:43484464:43484657,	43483627	43483928	43483629	43483629	Nonsense_Mutation	G	A	p.Q96*
HNSC	TCGA-CV-A6K2-01	YIPF3	ENST00000510102.1,ENST00000416380.2	chr6	43483343:43483439:43483626:43483925:43484464:43484657,	43483627	43483925	43483629	43483629	Nonsense_Mutation	G	A	p.Q96*
HNSC	TCGA-CV-A6K2-01	YIPF3	ENST00000506469.1	chr6	43483343:43483439:43483626:43483851:43484464:43484657,	43483627	43483851	43483629	43483629	Nonsense_Mutation	G	A	p.Q96*
HNSC	TCGA-CV-A6K2-01	YIPF3	ENST00000503972.1,ENST00000460903.2	chr6	43483343:43483439:43483626:43483833:43484464:43484657,	43483627	43483833	43483629	43483629	Nonsense_Mutation	G	A	p.Q96*
HNSC	TCGA-CV-A6K2-01	YIPF3	ENST00000455768.2	chr6	43483343:43483439:43483626:43483784:43484464:43484657,	43483627	43483784	43483629	43483629	Nonsense_Mutation	G	A	p.Q96*
HNSC	TCGA-CV-A6K2-01	ST5	ENST00000532734.1,ENST00000526099.1,ENST00000530593.1,ENST00000534127.1,ENST00000526757.1,ENST00000528527.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1,ENST00000533020.1	chr11	8736156:8736253:8737149:8737365:8739287:8739383,	8737150	8737365	8737229	8737229	Nonsense_Mutation	G	C	p.S589*
HNSC	TCGA-CV-A6K2-01	CARF	ENST00000320443.8,ENST00000545262.1,ENST00000402905.3,ENST00000545253.1,ENST00000428585.1,ENST00000438828.2,ENST00000414439.1	chr2	203836227:203836461:203839056:203839219:203841991:203842055,	203839057	203839219	203839200	203839200	Nonsense_Mutation	C	G	p.S492*
HNSC	TCGA-CV-A6K2-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90857709	90857709	Nonsense_Mutation	C	T	p.Q960*
HNSC	TCGA-CV-A6K2-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122432270:122432420:122432718:122432781:122433108:122433276,	122432719	122432781	122432775	122432775	Nonsense_Mutation	C	T	p.Q1276*
HNSC	TCGA-CV-A6K2-01	CXCL16	ENST00000293778.6,ENST00000575168.1,ENST00000574412.1	chr17	4637883:4637947:4638386:4638803:4641702:4641785,	4638387	4638803	4638732	4638732	Nonsense_Mutation	G	A	p.Q144*
HNSC	TCGA-CV-A6K2-01	BRD7	ENST00000475877.1,ENST00000394689.2,ENST00000394688.3	chr16	50373886:50373997:50383933:50384078:50388335:50388390,	50383934	50384078	50383954	50383954	Nonsense_Mutation	G	A	p.Q191*
HNSC	TCGA-CV-A6K2-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961828	41961828	Nonsense_Mutation	C	T	p.Q246*
HNSC	TCGA-CV-A6K2-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699037	30699037	Nonsense_Mutation	C	T	p.Q298*
HNSC	TCGA-CN-A642-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131411	202131411	Nonsense_Mutation	C	T	p.R127*
HNSC	TCGA-CN-A642-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131411	202131411	Nonsense_Mutation	C	T	p.R127*
HNSC	TCGA-CN-A642-01	SPATA6L	ENST00000461761.1,ENST00000406861.2,ENST00000485616.1,ENST00000454239.2,ENST00000475086.1,ENST00000381895.5,ENST00000486047.1	chr9	4600519:4600809:4604178:4604269:4605346:4605440,	4604179	4604269	4604233	4604233	Nonsense_Mutation	T	A	p.R376*
HNSC	TCGA-CN-A499-01	ALKBH5	ENST00000399138.4	chr17	18087552:18088327:18098268:18098349:18110128:18110284,	18098269	18098349	18098327	18098327	Nonsense_Mutation	C	T	p.R277*
HNSC	TCGA-CN-A63T-01	ANO5	ENST00000324559.8	chr11	22248847:22249132:22257708:22257822:22261114:22261230,	22257709	22257822	22257772	22257772	Nonsense_Mutation	G	T	p.E238*
HNSC	TCGA-CN-A63T-01	F13A1	ENST00000264870.3,ENST00000431222.2,ENST00000414279.1	chr6	6266966:6267042:6305583:6305772:6318767:6318915,	6305584	6305772	6305591	6305591	Nonsense_Mutation	G	T	p.Y104*
HNSC	TCGA-CN-A63T-01	SCEL	ENST00000535157.1,ENST00000349847.3	chr13	78165529:78165595:78167648:78167708:78171679:78171724,	78167649	78167708	78167687	78167687	Nonsense_Mutation	C	A	p.S222*
HNSC	TCGA-CV-7437-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471961	56471961	Nonsense_Mutation	G	A	p.Q2456*
HNSC	TCGA-CV-7437-01	LIPI	ENST00000344577.2,ENST00000536861.1	chr21	15537571:15537711:15538682:15538772:15554078:15554180,	15538683	15538772	15538694	15538694	Nonsense_Mutation	G	C	p.S262*
HNSC	TCGA-CV-7437-01	WASH4P	ENST00000462860.1,ENST00000538848.2,ENST00000483390.2,ENST00000326592.9	chr16	66540:66738:66915:67051:67290:67427,	66916	67051	67048	67048	Nonsense_Mutation	G	C	p.Y196*
HNSC	TCGA-CV-6953-01	CLEC12B	ENST00000544853.1,ENST00000338896.5,ENST00000539155.1,ENST00000396502.1	chr12	10167129:10167340:10167850:10168005:10168210:10168326,	10167851	10168005	10167883	10167883	Nonsense_Mutation	C	T	p.Q148*
HNSC	TCGA-CV-6953-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-6953-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-6953-01	SHC4	ENST00000332408.4,ENST00000537958.1,ENST00000396535.3	chr15	49117975:49118323:49126965:49127219:49135605:49135785,	49126966	49127219	49127202	49127202	Nonsense_Mutation	G	A	p.Q501*
HNSC	TCGA-CV-5430-01	ACSM3	ENST00000568235.1	chr16	20775361:20775447:20781305:20781575:20787160:20787242,20766894:20766938:20781305:20781575:20787160:20787242,	20781306	20781575	20781560	20781560	Nonsense_Mutation	G	A	p.W68*
HNSC	TCGA-CV-5430-01	PTK2	ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000521059.1,ENST00000520828.1,ENST00000340930.3,ENST00000395218.2,ENST00000522684.1,ENST00000520475.1,ENST00000535192.1	chr8	141856757:141856777:141874410:141874498:141900641:141900702,141856757:141856777:141874410:141874498:141889569:141889736,	141874411	141874498	141874416	141874416	Nonsense_Mutation	G	A	p.Q149*
HNSC	TCGA-CV-5430-01	ADCY4	ENST00000310677.4,ENST00000554781.1,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24788534:24788642:24788947:24789094:24790921:24791182,24788534:24788642:24788947:24789094:24791271:24791430,	24788948	24789094	24789048	24789048	Nonsense_Mutation	G	C	p.S878*
HNSC	TCGA-BA-5151-01	CRYZ	ENST00000370872.3,ENST00000417775.1,ENST00000340866.5	chr1	75172582:75172678:75172786:75172888:75175781:75175931,	75172787	75172888	75172795	75172795	Nonsense_Mutation	G	A	p.R242*
HNSC	TCGA-BA-5151-01	MARCH7	ENST00000259050.4,ENST00000539065.1	chr2	160572191:160572277:160585519:160585686:160599571:160599722,160569033:160569172:160585519:160585686:160599571:160599722,160569009:160569117:160585519:160585686:160599571:160599722,	160585520	160585686	160585576	160585576	Nonsense_Mutation	C	T	p.Q15*
HNSC	TCGA-BA-4074-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711893	89711893	Nonsense_Mutation	C	T	p.Q171*
HNSC	TCGA-UF-A71B-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139609146:139609213:139610961:139611141:139614357:139614402,	139610962	139611141	139611102	139611102	Nonsense_Mutation	C	A	p.G1409*
HNSC	TCGA-BB-A5HZ-01	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927382	43927382	Nonsense_Mutation	C	T	p.Q429*
HNSC	TCGA-BB-A5HZ-01	RHOA	ENST00000418115.1,ENST00000445425.1,ENST00000422781.1	chr3	49399949:49400059:49405860:49405981:49412866:49413024,	49405861	49405981	49405978	49405978	Nonsense_Mutation	C	A	p.E54*
HNSC	TCGA-CR-7365-01	PKD1L2	ENST00000526632.1,ENST00000525539.1,ENST00000299598.7,ENST00000337114.4	chr16	81214755:81214876:81219096:81219304:81222485:81222603,	81219097	81219304	81219116	81219116	Nonsense_Mutation	C	A	p.E660*
HNSC	TCGA-CR-7365-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82834175	82834175	Nonsense_Mutation	G	T	p.E1785*
HNSC	TCGA-CR-7365-01	RNF14	ENST00000394514.2	chr5	141354368:141354520:141357867:141358395:141359687:141359842,141353147:141353307:141357867:141358395:141359687:141359842,	141357868	141358395	141358012	141358012	Nonsense_Mutation	C	T	p.Q151*
HNSC	TCGA-CR-7365-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631735	116631735	Nonsense_Mutation	G	C	p.S197*
HNSC	TCGA-CR-5248-01	SCPEP1	ENST00000575423.1,ENST00000262288.3	chr17	55074374:55074416:55075745:55075859:55078215:55078353,	55075746	55075859	55075841	55075841	Nonsense_Mutation	G	T	p.E326*
HNSC	TCGA-CR-5248-01	SCPEP1	ENST00000576154.1	chr17	55074374:55074416:55075734:55075859:55078215:55078353,	55075735	55075859	55075841	55075841	Nonsense_Mutation	G	T	p.E326*
HNSC	TCGA-CR-5248-01	WIPI2	ENST00000466014.1	chr7	5230077:5230124:5232748:5232976:5239206:5239289,	5232749	5232976	5232766	5232766	Nonsense_Mutation	C	G	p.S31*
HNSC	TCGA-CR-5248-01	WIPI2	ENST00000404704.3	chr7	5230077:5230124:5232748:5232802:5239206:5239289,	5232749	5232802	5232766	5232766	Nonsense_Mutation	C	G	p.S31*
HNSC	TCGA-CR-5248-01	HGSNAT	ENST00000458501.2,ENST00000379644.4,ENST00000519705.1,ENST00000521576.1,ENST00000297798.7	chr8	43052814:43052885:43052982:43053095:43054530:43055001,	43052983	43053095	43053070	43053070	Nonsense_Mutation	G	A	p.W595*
HNSC	TCGA-CR-5248-01	UBR4	ENST00000425413.1,ENST00000375226.2,ENST00000417040.1,ENST00000375254.3,ENST00000375267.2,ENST00000375217.2	chr1	19451034:19451184:19452939:19453149:19454116:19454195,	19452940	19453149	19453067	19453067	Nonsense_Mutation	G	C	p.S3104*
HNSC	TCGA-CR-6492-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659189	86659189	Nonsense_Mutation	T	A	p.L316*
HNSC	TCGA-CR-6492-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CR-6492-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CR-6492-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542660	187542660	Nonsense_Mutation	G	A	p.Q1694*
HNSC	TCGA-CR-6484-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000369856.3,ENST00000422373.1,ENST00000420627.1	chrX	153579276:153579409:153579948:153580064:153580251:153580389,	153579949	153580064	153580056	153580056	Nonsense_Mutation	C	A	p.E2298*
HNSC	TCGA-CR-6484-01	C19orf44	ENST00000594035.1,ENST00000221671.3,ENST00000593380.1	chr19	16611602:16612362:16613875:16614191:16617511:16617585,	16613876	16614191	16614078	16614078	Nonsense_Mutation	C	G	p.S321*
HNSC	TCGA-CR-6484-01	MYO1B	ENST00000339514.4,ENST00000304164.4,ENST00000451437.1,ENST00000392318.3,ENST00000392316.1	chr2	192214887:192214951:192225356:192225455:192226993:192227097,	192225357	192225455	192225422	192225422	Nonsense_Mutation	C	T	p.Q210*
HNSC	TCGA-CR-6484-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
HNSC	TCGA-CR-6484-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213414696	213414696	Nonsense_Mutation	C	A	p.S626*
HNSC	TCGA-CR-6484-01	STYXL1	ENST00000248600.1,ENST00000454618.1,ENST00000359697.3,ENST00000451157.1,ENST00000431581.1	chr7	75634576:75634722:75643059:75643205:75651168:75651283,	75643060	75643205	75643194	75643194	Nonsense_Mutation	G	A	p.Q107*
HNSC	TCGA-CV-7104-01	DCDC1	ENST00000597505.1,ENST00000452803.1	chr11	31287053:31287147:31312193:31312399:31327161:31327324,	31312194	31312399	31312208	31312208	Nonsense_Mutation	C	A	p.E316*
HNSC	TCGA-CV-7104-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579575	7579575	Nonsense_Mutation	G	A	p.Q38*
HNSC	TCGA-CV-7104-01	AK5	ENST00000344720.5,ENST00000530826.1,ENST00000354567.2	chr1	77951992:77952037:77984248:77984412:77987511:77987628,	77984249	77984412	77984359	77984359	Nonsense_Mutation	G	T	p.E394*
HNSC	TCGA-CV-7104-01	TRIM69	ENST00000329464.4,ENST00000559390.1	chr15	45028763:45028908:45047097:45047574:45048565:45048661,	45047098	45047574	45047401	45047401	Nonsense_Mutation	A	T	p.K104*
HNSC	TCGA-KU-A6H7-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48936983	48936983	Nonsense_Mutation	C	T	p.R251*
HNSC	TCGA-KU-A6H7-01	IRAK1	ENST00000477274.1,ENST00000443220.1,ENST00000369980.3,ENST00000393687.2,ENST00000393682.1,ENST00000369974.2,ENST00000429936.2	chrX	153282399:153282518:153283456:153283571:153283741:153283806,	153283457	153283571	153283528	153283528	Nonsense_Mutation	G	A	p.Q280*
HNSC	TCGA-KU-A6H7-01	FARP1	ENST00000601009.1,ENST00000595437.1,ENST00000376586.2,ENST00000595380.1,ENST00000319562.6	chr13	99036983:99037098:99037920:99038068:99040636:99040732,	99037921	99038068	99037976	99037976	Nonsense_Mutation	G	T	p.E223*
HNSC	TCGA-KU-A6H7-01	ZNF74	ENST00000357502.5	chr22	20748918:20748952:20749622:20749708:20753884:20753980,20748918:20748952:20749622:20749708:20754921:20755048,20748478:20748624:20749622:20749708:20754921:20755048,	20749623	20749708	20749634	20749634	Nonsense_Mutation	C	T	p.Q16*
HNSC	TCGA-QK-A8Z8-01	ACMSD	ENST00000485893.1,ENST00000283054.4	chr2	135596187:135596309:135602802:135602847:135616830:135616927,	135602803	135602847	135602814	135602814	Nonsense_Mutation	C	G	p.Y23*
HNSC	TCGA-QK-A8Z8-01	HSH2D	ENST00000593154.2,ENST00000586872.1,ENST00000253680.6,ENST00000588246.1,ENST00000587963.1	chr19	16254545:16254584:16259533:16259685:16262256:16262388,16254545:16254584:16259533:16259685:16263361:16263451,	16259534	16259685	16259679	16259679	Nonsense_Mutation	C	A	p.S40*
HNSC	TCGA-QK-A8Z8-01	LAMP2	ENST00000200639.4	chrX	119565102:119565317:119575584:119575749:119576453:119576517,	119575585	119575749	119575685	119575685	Nonsense_Mutation	G	T	p.C331*
HNSC	TCGA-QK-A8Z8-01	CAMTA1	ENST00000439411.2,ENST00000303635.7	chr1	7309550:7309686:7527889:7527961:7700459:7700613,	7527890	7527961	7527898	7527898	Nonsense_Mutation	C	A	p.Y149*
HNSC	TCGA-CX-7086-01	CCPG1	ENST00000570272.1,ENST00000425574.3,ENST00000310958.6,ENST00000442196.3,ENST00000569205.1,ENST00000564092.1,ENST00000568808.1,ENST00000563171.1	chr15	55670497:55670574:55677797:55677912:55681562:55681631,	55677798	55677912	55677908	55677908	Nonsense_Mutation	G	T	p.S22*
HNSC	TCGA-CX-7086-01	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3	chr10	124333230:124333278:124335914:124336238:124337326:124337356,	124335915	124336238	124336113	124336113	Nonsense_Mutation	C	A	p.S161*
HNSC	TCGA-CV-7245-01	EBF3	ENST00000368648.3	chr10	131638508:131638706:131639107:131639296:131640379:131640435,131638508:131638598:131639107:131639296:131640379:131640435,	131639108	131639296	131639253	131639253	Nonsense_Mutation	G	T	p.Y463*
HNSC	TCGA-CV-7245-01	C5orf38	ENST00000397835.4	chr5	2752378:2752578:2752735:2752868:2753398:2753469,2752378:2752578:2752735:2752868:2755142:2755195,	2752736	2752868	2752749	2752749	Nonsense_Mutation	A	T	p.K72*
HNSC	TCGA-CV-7245-01	DNAJC12	ENST00000225171.2	chr10	69565344:69565545:69571281:69571421:69583071:69583150,	69571282	69571421	69571401	69571401	Nonsense_Mutation	G	A	p.Q60*
HNSC	TCGA-CV-7245-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675284	176675284	Nonsense_Mutation	G	T	p.E1534*
HNSC	TCGA-CV-7245-01	PSME4	ENST00000404125.1,ENST00000389993.3	chr2	54135920:54135977:54137211:54137267:54146287:54146383,	54137212	54137267	54137242	54137242	Nonsense_Mutation	C	A	p.E848*
HNSC	TCGA-CN-6010-01	MON2	ENST00000393629.2,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000393632.2	chr12	62936876:62936978:62938677:62938788:62940676:62940852,	62938678	62938788	62938684	62938684	Nonsense_Mutation	C	T	p.Q826*
HNSC	TCGA-CV-A6JU-01	ENOX1	ENST00000261488.6,ENST00000412891.1	chr13	43986051:43986189:43986980:43987124:44058144:44058288,	43986981	43987124	43986996	43986996	Nonsense_Mutation	G	A	p.Q19*
HNSC	TCGA-CV-A6JU-01	UNC13C	ENST00000537900.1	chr15	54305100:54308083:54435214:54435237:54435816:54435881,	54435215	54435237	54435232	54435232	Nonsense_Mutation	G	T	p.E1001*
HNSC	TCGA-UF-A719-01	SEC16B	ENST00000528461.1,ENST00000308284.6,ENST00000495165.1	chr1	177901624:177901704:177901832:177901941:177902348:177902447,	177901833	177901941	177901895	177901895	Nonsense_Mutation	G	T	p.S957*
HNSC	TCGA-CV-7413-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-7413-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-BA-5153-01	CYLD	ENST00000564326.1,ENST00000566206.1,ENST00000311559.9,ENST00000568704.2,ENST00000540145.1,ENST00000427738.3,ENST00000398568.2,ENST00000569418.1	chr16	50818239:50818362:50820765:50820857:50821696:50821763,	50820766	50820857	50820854	50820854	Nonsense_Mutation	A	T	p.K680*
HNSC	TCGA-BA-A6D8-01	NPRL3	ENST00000405960.3,ENST00000457916.1,ENST00000399953.3	chr16	162658:162774:169124:169254:174935:175047,162658:162774:169124:169254:180520:180590,167299:167374:169124:169254:180520:180590,	169125	169254	169169	169169	Nonsense_Mutation	G	A	p.R92*
HNSC	TCGA-BA-A6D8-01	ITGAL	ENST00000356798.6	chr16	30486833:30486901:30492759:30492905:30495147:30495285,30490651:30490782:30492759:30492905:30495147:30495280,	30492760	30492905	30492809	30492809	Nonsense_Mutation	C	G	p.S209*
HNSC	TCGA-CN-A49C-01	PLEKHG7	ENST00000344636.3	chr12	93157816:93157970:93162758:93162856:93163863:93166231,	93162759	93162856	93162805	93162805	Nonsense_Mutation	T	G	p.Y327*
HNSC	TCGA-CR-7376-01	COL1A1	ENST00000225964.5	chr17	48272794:48272839:48272927:48273026:48273283:48273337,	48272928	48273026	48273002	48273002	Nonsense_Mutation	G	A	p.R361*
HNSC	TCGA-TN-A7HJ-01	SLC14A2	ENST00000323329.3,ENST00000586448.1,ENST00000255226.6	chr18	43205647:43205828:43206922:43207112:43212314:43212443,	43206923	43207112	43207085	43207085	Nonsense_Mutation	T	A	p.L165*
HNSC	TCGA-TN-A7HJ-01	BUB1	ENST00000535254.1,ENST00000302759.6	chr2	111398610:111398782:111398883:111399041:111399218:111399266,	111398884	111399041	111398996	111398996	Nonsense_Mutation	G	A	p.Q871*
HNSC	TCGA-BA-A6DF-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157590	106157590	Nonsense_Mutation	C	T	p.Q852*
HNSC	TCGA-BA-A6DF-01	NOTCH1	ENST00000277541.6	chr9	139412203:139412389:139412588:139412744:139413042:139413276,	139412589	139412744	139412697	139412697	Nonsense_Mutation	C	A	p.E383*
HNSC	TCGA-BA-A6DF-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75157339	75157339	Nonsense_Mutation	C	A	p.E444*
HNSC	TCGA-BA-A6DF-01	RAD54L2	ENST00000432863.1,ENST00000461680.1,ENST00000409535.2,ENST00000487093.1,ENST00000296477.3	chr3	51677890:51677990:51679039:51679245:51679606:51679779,	51679040	51679245	51679077	51679077	Nonsense_Mutation	C	T	p.R830*
HNSC	TCGA-CR-6493-01	PIP4K2C	ENST00000354947.5,ENST00000551772.1,ENST00000550095.1,ENST00000550360.1,ENST00000540759.2	chr12	57987807:57987905:57988908:57989005:57992847:57992877,57987807:57987905:57988908:57989005:57989670:57989814,	57988909	57989005	57988994	57988994	Nonsense_Mutation	C	T	p.Q120*
HNSC	TCGA-D6-A6ES-01	WISP1	ENST00000377863.2	chr8	134225106:134225386:134237632:134237826:134239653:134239959,134232823:134233084:134237632:134237826:134239653:134239959,134203379:134203456:134237632:134237826:134239653:134239959,	134237633	134237826	134237784	134237784	Nonsense_Mutation	C	A	p.C254*
HNSC	TCGA-D6-A6ES-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214587971:214588069:214625147:214625317:214637972:214638146,	214625148	214625317	214625281	214625281	Nonsense_Mutation	G	A	p.Q71*
HNSC	TCGA-DQ-5624-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462454	5462454	Nonsense_Mutation	C	T	p.W521*
HNSC	TCGA-DQ-5624-01	ADCY3	ENST00000606682.1,ENST00000260600.5,ENST00000405392.1	chr2	25042237:25042983:25043592:25043717:25044385:25044509,	25043593	25043717	25043595	25043595	Nonsense_Mutation	G	A	p.Q1084*
HNSC	TCGA-DQ-5624-01	PACSIN2	ENST00000402229.1	chr22	43289579:43289619:43308026:43308163:43355804:43355887,43289579:43289619:43308026:43308163:43411026:43411104,43289579:43289619:43308026:43308163:43355577:43355905,43289579:43289619:43308026:43308163:43342902:43343047,43289579:43289619:43308026:43308163:43355768:43355884,	43308027	43308163	43308053	43308053	Nonsense_Mutation	C	A	p.E12*
HNSC	TCGA-F7-8298-01	NT5DC3	ENST00000392876.3,ENST00000415849.1	chr12	104181243:104181305:104182615:104182697:104186941:104187043,	104182616	104182697	104182618	104182618	Nonsense_Mutation	G	A	p.Q367*
HNSC	TCGA-CR-6477-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540779	187540779	Nonsense_Mutation	G	A	p.Q2321*
HNSC	TCGA-CR-6477-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71725761	71725761	Nonsense_Mutation	G	A	p.Q930*
HNSC	TCGA-BA-A6DG-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
HNSC	TCGA-BA-A6DG-01	NFXL1	ENST00000464756.2,ENST00000381538.3,ENST00000507131.1,ENST00000508115.1,ENST00000502448.1,ENST00000507489.1	chr4	47853111:47853165:47853872:47853959:47857075:47857180,	47853873	47853959	47853953	47853953	Nonsense_Mutation	G	A	p.Q810*
HNSC	TCGA-BA-A6DG-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-BA-A6DG-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CN-4734-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469033	21469033	Nonsense_Mutation	C	T	p.Q84*
HNSC	TCGA-RS-A6TO-01	MAP2	ENST00000475600.1,ENST00000199940.6	chr2	210574677:210574978:210588318:210588411:210590432:210590514,	210588319	210588411	210588337	210588337	Nonsense_Mutation	A	T	p.K399*
HNSC	TCGA-RS-A6TO-01	POLK	ENST00000509126.1	chr5	74886177:74886265:74892046:74893003:74893571:74893614,	74892047	74893003	74892236	74892236	Nonsense_Mutation	C	G	p.S573*
HNSC	TCGA-RS-A6TO-01	IPO7	ENST00000379719.3	chr11	9455116:9455183:9455267:9455393:9456480:9456578,	9455268	9455393	9455312	9455312	Nonsense_Mutation	C	T	p.Q665*
HNSC	TCGA-RS-A6TO-01	ARL8A	ENST00000272217.2	chr1	202104329:202104348:202104586:202104654:202104834:202104928,	202104587	202104654	202104633	202104633	Nonsense_Mutation	G	A	p.R132*
HNSC	TCGA-RS-A6TO-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
HNSC	TCGA-RS-A6TO-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-RS-A6TO-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-IQ-A61O-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-HD-8635-01	PRTG	ENST00000389286.4	chr15	55916539:55916705:55919205:55919326:55921019:55921202,	55919206	55919326	55919293	55919293	Nonsense_Mutation	G	C	p.S947*
HNSC	TCGA-BB-4227-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115273149:115273269:115275224:115275437:115276352:115276478,	115275225	115275437	115275262	115275262	Nonsense_Mutation	G	C	p.S384*
HNSC	TCGA-BB-4227-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670672	13670672	Nonsense_Mutation	G	T	p.E908*
HNSC	TCGA-BB-4227-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-BB-4227-01	MYL9	ENST00000346786.2	chr20	35169899:35169964:35173261:35173471:35177479:35178228,	35173262	35173471	35173441	35173441	Nonsense_Mutation	G	T	p.E52*
HNSC	TCGA-BB-4227-01	PUF60	ENST00000531951.1,ENST00000533162.1,ENST00000526683.1,ENST00000524570.1,ENST00000453551.2,ENST00000527744.1,ENST00000456095.2,ENST00000527584.1	chr8	144900542:144900704:144902835:144902886:144903766:144903856,	144902836	144902886	144902849	144902849	Nonsense_Mutation	G	C	p.S112*
HNSC	TCGA-BB-4227-01	RNF31	ENST00000559308.1,ENST00000324103.6,ENST00000558634.1,ENST00000557878.1,ENST00000558907.1,ENST00000560071.1,ENST00000559260.1,ENST00000560787.1,ENST00000559533.1,ENST00000560342.1,ENST00000557991.1,ENST00000559438.1	chr14	24617290:24617331:24617466:24617622:24617850:24617865,	24617467	24617622	24617533	24617533	Nonsense_Mutation	G	T	p.E136*
HNSC	TCGA-BB-4227-01	RNF31	ENST00000559275.1	chr14	24617290:24617331:24617466:24617686:24617850:24617865,	24617467	24617686	24617533	24617533	Nonsense_Mutation	G	T	p.E136*
HNSC	TCGA-BB-4227-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6,ENST00000530092.1	chr19	1054778:1054877:1055095:1055350:1055905:1055938,	1055096	1055350	1055346	1055346	Nonsense_Mutation	C	T	p.Q1401*
HNSC	TCGA-CN-5369-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000550785.1	chr12	113711373:113711473:113714723:113714840:113715044:113715169,	113714724	113714840	113714796	113714796	Nonsense_Mutation	C	T	p.R411*
HNSC	TCGA-CN-5369-01	PARP4	ENST00000381989.3	chr13	25068710:25068860:25072253:25072367:25073438:25073514,	25072254	25072367	25072325	25072325	Nonsense_Mutation	G	A	p.Q174*
HNSC	TCGA-CN-5369-01	ZMIZ1	ENST00000478357.1	chr10	81050715:81050933:81051914:81052113:81053137:81053410,81050715:81050933:81051914:81052113:81053119:81056692,	81051915	81052113	81051988	81051988	Nonsense_Mutation	C	T	p.Q278*
HNSC	TCGA-CN-5369-01	TUSC3	ENST00000509380.1,ENST00000515859.1,ENST00000510836.1,ENST00000506802.1,ENST00000382020.4,ENST00000503731.1	chr8	15397791:15398077:15480588:15480758:15508205:15508323,	15480589	15480758	15480730	15480730	Nonsense_Mutation	C	T	p.Q94*
HNSC	TCGA-CN-5369-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000376237.4,ENST00000487245.1	chr6	31237742:31237862:31237986:31238262:31238849:31239108,	31237987	31238262	31238116	31238116	Nonsense_Mutation	C	A	p.E256*
HNSC	TCGA-CN-5369-01	PDCD2L	ENST00000246535.3,ENST00000587385.2	chr19	34904641:34904752:34912423:34912572:34916894:34917055,	34912424	34912572	34912527	34912527	Nonsense_Mutation	C	T	p.Q301*
HNSC	TCGA-CN-5369-01	LAG3	ENST00000203629.2,ENST00000538079.1	chr12	6884438:6884714:6886429:6886672:6886956:6887087,	6886430	6886672	6886563	6886563	Nonsense_Mutation	G	A	p.W397*
HNSC	TCGA-IQ-A61I-01	GTF2E1	ENST00000283875.5	chr3	120461608:120461641:120469369:120469847:120489574:120489776,	120469370	120469847	120469577	120469577	Nonsense_Mutation	C	T	p.R60*
HNSC	TCGA-IQ-A61I-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27874638	27874638	Nonsense_Mutation	G	T	p.S1330*
HNSC	TCGA-CR-6480-01	EZH1	ENST00000592743.1,ENST00000586103.1,ENST00000585912.1,ENST00000590078.1,ENST00000435174.1,ENST00000415827.2,ENST00000586867.1,ENST00000428826.2,ENST00000585893.1,ENST00000588897.1,ENST00000591330.1,ENST00000586382.1	chr17	40869993:40870085:40870471:40870635:40871122:40871196,	40870472	40870635	40870631	40870631	Nonsense_Mutation	G	A	p.R258*
HNSC	TCGA-CR-6480-01	NFATC1	ENST00000542384.1,ENST00000587635.1,ENST00000329101.4,ENST00000427363.2,ENST00000592223.1,ENST00000586434.1,ENST00000545796.1,ENST00000253506.5,ENST00000591814.1,ENST00000318065.5,ENST00000590313.1,ENST00000397790.2	chr18	77193578:77193738:77208781:77208984:77210953:77211041,	77208782	77208984	77208872	77208872	Nonsense_Mutation	C	T	p.Q493*
HNSC	TCGA-QK-A6IJ-01	RBL2	ENST00000544405.2,ENST00000561512.1,ENST00000379935.4,ENST00000544545.1,ENST00000262133.6	chr16	53495680:53495762:53496463:53496567:53498137:53498275,	53496464	53496567	53496504	53496504	Nonsense_Mutation	C	G	p.Y499*
HNSC	TCGA-QK-A6IJ-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813371	214813371	Nonsense_Mutation	G	T	p.E564*
HNSC	TCGA-BA-6873-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131411	202131411	Nonsense_Mutation	C	T	p.R127*
HNSC	TCGA-BA-6873-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131411	202131411	Nonsense_Mutation	C	T	p.R127*
HNSC	TCGA-BA-6873-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462185	16462185	Nonsense_Mutation	G	A	p.R465*
HNSC	TCGA-BA-6873-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-BA-6873-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CN-5359-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578247	7578247	Nonsense_Mutation	A	T	p.L201*
HNSC	TCGA-CN-5359-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CN-5359-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-MT-A7BN-01	TATDN1	ENST00000523214.1,ENST00000522927.1,ENST00000522810.1,ENST00000519548.1,ENST00000276692.6	chr8	125500870:125500937:125506073:125506200:125507712:125507783,	125506074	125506200	125506161	125506161	Nonsense_Mutation	G	C	p.S235*
HNSC	TCGA-MT-A7BN-01	RBM28	ENST00000223073.2,ENST00000415472.2	chr7	127954816:127955073:127957711:127957786:127958009:127958159,	127957712	127957786	127957756	127957756	Nonsense_Mutation	G	A	p.R582*
HNSC	TCGA-HD-A633-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542225	187542225	Nonsense_Mutation	C	A	p.E1839*
HNSC	TCGA-HD-A633-01	MSH3	ENST00000265081.6	chr5	79960961:79961182:79965915:79966128:79968062:79968179,	79965916	79966128	79965953	79965953	Nonsense_Mutation	C	G	p.S206*
HNSC	TCGA-HD-A633-01	PKHD1L1	ENST00000378402.5	chr8	110420277:110420435:110422093:110422207:110424493:110424643,	110422094	110422207	110422190	110422190	Nonsense_Mutation	G	T	p.E690*
HNSC	TCGA-HD-A633-01	MRPL22	ENST00000522038.1	chr5	154320776:154320825:154330362:154330498:154335930:154335996,	154330363	154330498	154330430	154330430	Nonsense_Mutation	C	T	p.R43*
HNSC	TCGA-HD-A633-01	MRPL22	ENST00000439747.3,ENST00000523037.1	chr5	154320776:154320825:154330380:154330498:154335930:154335996,	154330381	154330498	154330430	154330430	Nonsense_Mutation	C	T	p.R43*
HNSC	TCGA-CV-7427-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67699870	67699870	Nonsense_Mutation	C	T	p.R808*
HNSC	TCGA-CV-7427-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175293491:175293655:175299209:175299371:175304846:175304943,	175299210	175299371	175299264	175299264	Nonsense_Mutation	C	A	p.E1247*
HNSC	TCGA-CV-7427-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256444	9256444	Nonsense_Mutation	C	G	p.S1037*
HNSC	TCGA-CV-7427-01	HK2	ENST00000409174.1,ENST00000290573.2	chr2	75099426:75099546:75100402:75100498:75100970:75101070,	75100403	75100498	75100416	75100416	Nonsense_Mutation	C	G	p.S170*
HNSC	TCGA-CV-7427-01	RPN2	ENST00000373622.5	chr20	35826837:35826895:35827452:35827628:35832287:35832363,35812621:35812776:35827452:35827628:35832287:35832363,	35827453	35827628	35827508	35827508	Nonsense_Mutation	C	A	p.S120*
HNSC	TCGA-CV-7427-01	NFATC2	ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000610033.1	chr20	50007945:50007988:50048603:50049293:50051724:50051851,50015179:50015267:50048603:50049293:50051724:50051851,	50048604	50049293	50049030	50049030	Nonsense_Mutation	G	A	p.Q766*
HNSC	TCGA-CV-7427-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016425	1016425	Nonsense_Mutation	G	A	p.Q2126*
HNSC	TCGA-CV-7427-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3,ENST00000587673.1	chr19	1109504:1109597:1109681:1109776:1110743:1110887,	1109682	1109776	1109708	1109708	Nonsense_Mutation	G	A	p.Q1033*
HNSC	TCGA-CV-7427-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156607	70156607	Nonsense_Mutation	G	A	p.R145*
HNSC	TCGA-CV-7427-01	TNFRSF4	ENST00000497869.1,ENST00000379236.3	chr1	1147083:1147212:1147321:1147518:1148017:1148084,	1147322	1147518	1147457	1147457	Nonsense_Mutation	C	A	p.E167*
HNSC	TCGA-IQ-A6SG-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951141	48951141	Nonsense_Mutation	G	T	p.G435*
HNSC	TCGA-CV-7414-01	DHPS	ENST00000210060.7,ENST00000594424.1,ENST00000595844.1,ENST00000351660.5,ENST00000595912.1,ENST00000596162.1,ENST00000601639.1,ENST00000597152.1,ENST00000598850.1,ENST00000601537.1	chr19	12788141:12788210:12790270:12790357:12790436:12790533,	12790271	12790357	12790281	12790281	Nonsense_Mutation	C	T	p.W223*
HNSC	TCGA-CV-7414-01	NRDE2	ENST00000354366.3	chr14	90778737:90778887:90782921:90783155:90784348:90784457,	90782922	90783155	90783141	90783141	Nonsense_Mutation	G	C	p.S63*
HNSC	TCGA-CV-7414-01	PTPRJ	ENST00000418331.2	chr11	48166226:48166437:48166551:48166676:48168427:48168515,	48166552	48166676	48166647	48166647	Nonsense_Mutation	C	G	p.S961*
HNSC	TCGA-CV-7414-01	PRKD3	ENST00000379066.1,ENST00000494667.1,ENST00000234179.2	chr2	37518010:37518142:37520275:37520414:37543379:37543531,	37520276	37520414	37520323	37520323	Nonsense_Mutation	G	C	p.S127*
HNSC	TCGA-CV-7414-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-7414-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-7414-01	CDH23	ENST00000398809.4,ENST00000299366.7,ENST00000461841.3,ENST00000398842.3	chr10	73270876:73270969:73326498:73326693:73330546:73330675,	73326499	73326693	73326583	73326583	Nonsense_Mutation	C	T	p.Q177*
HNSC	TCGA-CV-7414-01	RTN1	ENST00000432103.2,ENST00000395090.1,ENST00000474911.1,ENST00000267484.5,ENST00000342503.4	chr14	60070569:60070639:60072085:60072224:60074002:60074210,	60072086	60072224	60072193	60072193	Nonsense_Mutation	G	A	p.Q669*
HNSC	TCGA-CV-7414-01	FAM133B	ENST00000438306.1,ENST00000427372.1,ENST00000445716.1	chr7	92191595:92191682:92195327:92195375:92199136:92199229,	92195328	92195375	92195342	92195342	Nonsense_Mutation	G	A	p.R205*
HNSC	TCGA-CV-7414-01	FAM133B	ENST00000415397.2	chr7	92191595:92191682:92195323:92195375:92199136:92199229,	92195324	92195375	92195342	92195342	Nonsense_Mutation	G	A	p.R205*
HNSC	TCGA-CV-7446-01	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35759669:35759821:35763623:35763804:35771710:35771858,	35763624	35763804	35763640	35763640	Nonsense_Mutation	C	T	p.R1208*
HNSC	TCGA-IQ-A61G-01	CCDC66	ENST00000422222.1,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000341455.6	chr3	56647638:56647778:56649155:56649300:56649949:56650081,	56649156	56649300	56649288	56649288	Nonsense_Mutation	A	T	p.K567*
HNSC	TCGA-IQ-A61G-01	NT5C3B	ENST00000393910.1	chr17	39981905:39981909:39983677:39983878:39985041:39985115,39981905:39981909:39983677:39983878:39987052:39987132,	39983678	39983878	39983815	39983815	Nonsense_Mutation	C	A	p.E203*
HNSC	TCGA-CV-7177-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823767	114823767	Nonsense_Mutation	G	C	p.S488*
HNSC	TCGA-CV-5441-01	ABCC9	ENST00000544039.1,ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	21968696:21968827:21970120:21970241:21971083:21971185,	21970121	21970241	21970133	21970133	Nonsense_Mutation	C	A	p.E1294*
HNSC	TCGA-CV-5441-01	SPRED1	ENST00000561205.1	chr15	38545381:38545418:38591573:38591748:38614441:38614610,	38591574	38591748	38591587	38591587	Nonsense_Mutation	C	T	p.R16*
HNSC	TCGA-CV-5441-01	PKD2L1	ENST00000318222.3,ENST00000353274.3,ENST00000528248.1,ENST00000338519.3	chr10	102049771:102049895:102050157:102050276:102051057:102051184,	102050158	102050276	102050189	102050189	Nonsense_Mutation	C	A	p.G699*
HNSC	TCGA-BA-4078-01	POLR2G	ENST00000531944.1,ENST00000301788.7,ENST00000527435.1,ENST00000525455.1,ENST00000526368.1,ENST00000524819.1	chr11	62532811:62532877:62533124:62533196:62533714:62533748,	62533125	62533196	62533149	62533149	Nonsense_Mutation	G	T	p.E142*
HNSC	TCGA-BA-4078-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101833092:101833151:101837121:101837170:101838786:101838883,	101837122	101837170	101837129	101837129	Nonsense_Mutation	A	T	p.K373*
HNSC	TCGA-BA-4078-01	GALC	ENST00000544807.2,ENST00000261304.2,ENST00000555000.1,ENST00000393569.2,ENST00000393568.4,ENST00000557316.1	chr14	88407849:88407902:88411896:88412077:88414071:88414222,	88411897	88412077	88411945	88411945	Nonsense_Mutation	C	T	p.W541*
HNSC	TCGA-BA-4078-01	RHPN2	ENST00000400226.4,ENST00000544458.2,ENST00000588388.1,ENST00000254260.3	chr19	33481419:33481575:33482728:33482875:33484882:33484959,	33482729	33482875	33482784	33482784	Nonsense_Mutation	A	T	p.L530*
HNSC	TCGA-P3-A6T4-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329072	33329072	Nonsense_Mutation	G	T	p.S1663*
HNSC	TCGA-P3-A6T4-01	CTDSPL2	ENST00000558373.1,ENST00000396780.1,ENST00000559793.1,ENST00000558966.1,ENST00000558791.1,ENST00000260327.4	chr15	44751200:44751398:44776421:44776560:44778748:44778776,	44776422	44776560	44776530	44776530	Nonsense_Mutation	C	T	p.R99*
HNSC	TCGA-P3-A6T4-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121616838:121616905:121623718:121623876:121624020:121624171,	121623719	121623876	121623770	121623770	Nonsense_Mutation	C	G	p.S224*
HNSC	TCGA-P3-A6T4-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578234	7578234	Nonsense_Mutation	A	T	p.Y205*
HNSC	TCGA-P3-A6T4-01	NR4A1	ENST00000243050.1,ENST00000360284.3,ENST00000550582.2,ENST00000545748.1,ENST00000394825.1,ENST00000550082.1,ENST00000394824.2,ENST00000550557.1	chr12	52450927:52451043:52451135:52451314:52452471:52452487,	52451136	52451314	52451243	52451243	Nonsense_Mutation	C	G	p.S544*
HNSC	TCGA-BA-A6DL-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638614	176638614	Nonsense_Mutation	C	T	p.R1072*
HNSC	TCGA-CV-7433-01	CCNE1	ENST00000357943.5,ENST00000444983.2,ENST00000262643.3	chr19	30312628:30312724:30312902:30313037:30313146:30313258,	30312903	30313037	30312987	30312987	Nonsense_Mutation	G	T	p.E264*
HNSC	TCGA-CV-7433-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1	chr11	65310897:65311020:65313912:65314035:65314268:65314391,	65313913	65314035	65314018	65314018	Nonsense_Mutation	C	A	p.E750*
HNSC	TCGA-BB-4228-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189854121:189854175:189854821:189854875:189855032:189855086,	189854822	189854875	189854843	189854843	Nonsense_Mutation	C	T	p.R238*
HNSC	TCGA-BB-4228-01	TRAF3	ENST00000351691.5,ENST00000560371.1,ENST00000347662.4,ENST00000559734.1,ENST00000392745.2	chr14	103342694:103342862:103363597:103363738:103369591:103369766,103357661:103357754:103363597:103363738:103369591:103369766,	103363598	103363738	103363706	103363706	Nonsense_Mutation	C	T	p.R310*
HNSC	TCGA-BA-A6DI-01	NDUFV3	ENST00000460259.1,ENST00000354250.2	chr21	44317048:44317157:44323291:44324386:44328973:44329215,	44323292	44324386	44324335	44324335	Nonsense_Mutation	G	T	p.E405*
HNSC	TCGA-BA-A6DI-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542357	187542357	Nonsense_Mutation	G	A	p.R1795*
HNSC	TCGA-BA-5149-01	ASB9	ENST00000473862.1,ENST00000380488.4,ENST00000477346.2,ENST00000546332.1,ENST00000380485.3	chrX	15266865:15267057:15268551:15268686:15270375:15270439,	15268552	15268686	15268558	15268558	Nonsense_Mutation	C	A	p.E188*
HNSC	TCGA-BA-5149-01	ASB9	ENST00000380483.3	chrX	15266865:15267057:15268551:15268656:15270375:15270439,	15268552	15268656	15268558	15268558	Nonsense_Mutation	C	A	p.E188*
HNSC	TCGA-CV-5435-01	CUL3	ENST00000432260.2	chr2	225379352:225379489:225400244:225400358:225422375:225422537,225379352:225379489:225400244:225400358:225449660:225450065,225379352:225379489:225400244:225400358:225421011:225421106,	225400245	225400358	225400286	225400286	Nonsense_Mutation	G	A	p.Q113*
HNSC	TCGA-CV-5435-01	TXK	ENST00000264316.4,ENST00000510457.1	chr4	48091766:48091841:48096093:48096221:48097159:48097239,	48096094	48096221	48096214	48096214	Nonsense_Mutation	C	A	p.E197*
HNSC	TCGA-CV-5435-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579415	7579415	Nonsense_Mutation	C	T	p.W91*
HNSC	TCGA-CR-6470-01	SVIL	ENST00000375400.3,ENST00000375398.2,ENST00000355867.4	chr10	29788044:29788192:29801663:29801790:29811338:29811456,	29801664	29801790	29801693	29801693	Nonsense_Mutation	G	A	p.Q1163*
HNSC	TCGA-H7-8502-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579378	7579378	Nonsense_Mutation	G	T	p.Y103*
HNSC	TCGA-H7-8502-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578188	7578188	Nonsense_Mutation	C	A	p.E221*
HNSC	TCGA-CR-7394-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CR-7394-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CR-7394-01	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11236802:11236935:11346483:11346739:11364807:11365002,	11346484	11346739	11346704	11346704	Nonsense_Mutation	G	A	p.Q470*
HNSC	TCGA-CR-7394-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805793	22805793	Nonsense_Mutation	C	A	p.E697*
HNSC	TCGA-CV-7425-01	CCDC51	ENST00000395694.2	chr3	48475116:48475281:48476226:48476546:48481397:48481475,	48476227	48476546	48476325	48476325	Nonsense_Mutation	G	A	p.Q72*
HNSC	TCGA-CV-7425-01	MAN1B1	ENST00000371589.4,ENST00000371587.4,ENST00000474902.1,ENST00000535144.1,ENST00000544448.1	chr9	139992279:139992389:139994147:139994333:139995456:139995605,	139994148	139994333	139994165	139994165	Nonsense_Mutation	C	T	p.Q250*
HNSC	TCGA-IQ-A61E-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79290437:79290550:79291060:79291167:79292084:79292153,	79291061	79291167	79291063	79291063	Nonsense_Mutation	G	A	p.Q967*
HNSC	TCGA-IQ-A61E-01	COL18A1	ENST00000400337.2	chr21	46825293:46825388:46888155:46888700:46893808:46893895,	46888156	46888700	46888624	46888624	Nonsense_Mutation	C	G	p.S607*
HNSC	TCGA-IQ-A61E-01	UBL7	ENST00000564488.1,ENST00000563081.1,ENST00000361351.4,ENST00000567435.1,ENST00000395081.2,ENST00000565335.1	chr15	74744636:74744719:74748892:74749012:74751024:74751237,	74748893	74749012	74748953	74748953	Nonsense_Mutation	G	A	p.Q82*
HNSC	TCGA-IQ-A61E-01	EPDR1	ENST00000199448.4,ENST00000559325.1	chr7	37960921:37961053:37988441:37988650:37989801:37989888,37960259:37960810:37988441:37988650:37989801:37989888,	37988442	37988650	37988620	37988620	Nonsense_Mutation	G	T	p.E150*
HNSC	TCGA-IQ-A61E-01	CNKSR1	ENST00000482227.1,ENST00000480617.1,ENST00000528281.1,ENST00000361530.6,ENST00000531191.1,ENST00000374253.5	chr1	26513658:26513732:26513901:26513973:26514724:26514792,	26513902	26513973	26513909	26513909	Nonsense_Mutation	C	T	p.Q206*
HNSC	TCGA-IQ-A61E-01	UBR2	ENST00000372899.1,ENST00000372901.1,ENST00000372903.2	chr6	42571325:42571456:42573458:42573597:42574326:42574389,	42573459	42573597	42573562	42573562	Nonsense_Mutation	G	T	p.E256*
HNSC	TCGA-IQ-A61E-01	KIF16B	ENST00000408042.1,ENST00000355755.3,ENST00000378003.2,ENST00000354981.2	chr20	16493470:16493568:16496192:16496309:16506736:16506850,	16496193	16496309	16496215	16496215	Nonsense_Mutation	G	C	p.S109*
HNSC	TCGA-CQ-7072-01	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41434795:41434826:41446963:41447140:41450613:41450904,	41446964	41447140	41447099	41447099	Nonsense_Mutation	C	A	p.E1585*
HNSC	TCGA-CQ-7072-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637435	176637435	Nonsense_Mutation	C	T	p.Q679*
HNSC	TCGA-CN-5374-01	RMND1	ENST00000367303.4	chr6	151757580:151757689:151766442:151766960:151773150:151773254,	151766443	151766960	151766520	151766520	Nonsense_Mutation	G	A	p.Q143*
HNSC	TCGA-CV-7095-01	BIRC6	ENST00000421745.2	chr2	32718606:32718734:32724613:32725176:32726779:32726955,	32724614	32725176	32724766	32724766	Nonsense_Mutation	C	G	p.S2874*
HNSC	TCGA-CV-7095-01	RANBP3L	ENST00000296604.3,ENST00000515759.1	chr5	36265060:36265200:36265550:36265622:36269491:36269509,	36265551	36265622	36265595	36265595	Nonsense_Mutation	G	C	p.S99*
HNSC	TCGA-CV-7095-01	CCDC93	ENST00000319432.5,ENST00000376300.2	chr2	118753839:118753938:118758396:118758508:118764297:118764392,	118758397	118758508	118758500	118758500	Nonsense_Mutation	G	C	p.S87*
HNSC	TCGA-CV-7095-01	SENP1	ENST00000551330.1,ENST00000552189.1,ENST00000339976.6,ENST00000549518.1,ENST00000004980.5,ENST00000549595.1,ENST00000448372.1	chr12	48468472:48468576:48477373:48477545:48482583:48482743,	48477374	48477545	48477537	48477537	Nonsense_Mutation	G	C	p.S130*
HNSC	TCGA-CV-7095-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
HNSC	TCGA-CV-7095-01	PRR5L	ENST00000311599.5,ENST00000389693.3	chr11	36467849:36467990:36472758:36472885:36483891:36483989,36458934:36459026:36472758:36472885:36483891:36483989,	36472759	36472885	36472865	36472865	Nonsense_Mutation	C	G	p.S231*
HNSC	TCGA-CV-7095-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539252	187539252	Nonsense_Mutation	G	A	p.Q2830*
HNSC	TCGA-BB-7870-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638368	176638368	Nonsense_Mutation	G	T	p.E990*
HNSC	TCGA-BB-7870-01	SLC6A2	ENST00000219833.8,ENST00000566163.1,ENST00000561820.1,ENST00000568943.1,ENST00000567238.1,ENST00000414754.3,ENST00000379906.2	chr16	55729189:55729314:55730136:55730249:55731808:55731937,	55730137	55730249	55730200	55730200	Nonsense_Mutation	G	A	p.W404*
HNSC	TCGA-BB-7870-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000545076.1,ENST00000427684.2,ENST00000542652.2	chr18	5393178:5393477:5394675:5394792:5395065:5395146,	5394676	5394792	5394711	5394711	Nonsense_Mutation	C	A	p.E1079*
HNSC	TCGA-BB-7870-01	EXOSC2	ENST00000372352.3,ENST00000495699.2,ENST00000372350.3,ENST00000463488.1,ENST00000546165.1,ENST00000372358.5	chr9	133572968:133573014:133573548:133573638:133574715:133574781,	133573549	133573638	133573566	133573566	Nonsense_Mutation	G	A	p.W96*
HNSC	TCGA-BB-7870-01	EXOSC2	ENST00000430138.2	chr9	133570878:133570993:133572968:133573638:133574715:133574781,	133572969	133573638	133573566	133573566	Nonsense_Mutation	G	A	p.W96*
HNSC	TCGA-CQ-6224-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CQ-6224-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CQ-6224-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186101459:186101541:186105799:186106069:186106629:186106800,	186105800	186106069	186106021	186106021	Nonsense_Mutation	C	T	p.R4512*
HNSC	TCGA-CV-5432-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42356804	42356804	Nonsense_Mutation	A	T	p.K326*
HNSC	TCGA-CV-5432-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883214	4883214	Nonsense_Mutation	G	T	p.S467*
HNSC	TCGA-CV-5432-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-5432-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-5432-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119495677:119495802:119567910:119568099:119582895:119583062,	119567911	119568099	119567939	119567939	Nonsense_Mutation	G	A	p.Q790*
HNSC	TCGA-CV-5432-01	BAZ1A	ENST00000382422.2,ENST00000360310.1	chr14	35255331:35255427:35261980:35262127:35263954:35264093,	35261981	35262127	35262044	35262044	Nonsense_Mutation	G	A	p.Q483*
HNSC	TCGA-CV-5432-01	ZCWPW2	ENST00000383768.2,ENST00000421010.1	chr3	28476714:28476760:28520304:28520422:28533617:28533664,	28520305	28520422	28520395	28520395	Nonsense_Mutation	G	T	p.E195*
HNSC	TCGA-UF-A7JD-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-UF-A7JD-01	NSMCE4A	ENST00000369017.5,ENST00000489266.1	chr10	123720937:123721032:123722752:123722843:123724800:123724819,123721355:123721622:123722752:123722843:123724800:123724819,	123722753	123722843	123722762	123722762	Nonsense_Mutation	G	A	p.R120*
HNSC	TCGA-CV-7253-01	IGFN1	ENST00000437879.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201194951:201195251:201196009:201196336:201197513:201197776,	201196010	201196336	201196111	201196111	Nonsense_Mutation	G	T	p.E3630*
HNSC	TCGA-CV-7253-01	ST3GAL5	ENST00000393805.1,ENST00000377332.3,ENST00000393808.3	chr2	86073616:86073686:86074983:86075327:86088303:86088415,	86074984	86075327	86075251	86075251	Nonsense_Mutation	A	T	p.L132*
HNSC	TCGA-CV-7253-01	ST3GAL5	ENST00000306262.5	chr2	86073616:86073686:86074983:86075504:86088303:86088415,	86074984	86075504	86075251	86075251	Nonsense_Mutation	A	T	p.L132*
HNSC	TCGA-CV-7253-01	NAA16	ENST00000403412.3,ENST00000476980.1,ENST00000464857.1,ENST00000379367.3	chr13	41885430:41885718:41890981:41891066:41892941:41893046,	41890982	41891066	41891057	41891057	Nonsense_Mutation	G	T	p.E44*
HNSC	TCGA-CV-7253-01	TCP11	ENST00000444780.2,ENST00000412155.2,ENST00000418521.2,ENST00000455706.2,ENST00000512012.1,ENST00000373974.4,ENST00000311875.5,ENST00000504758.1,ENST00000373979.2,ENST00000244645.3,ENST00000505911.1,ENST00000427376.2,ENST00000486638.1,ENST00000469514.1	chr6	35088205:35088423:35088685:35088822:35089893:35090114,	35088686	35088822	35088707	35088707	Nonsense_Mutation	C	A	p.E245*
HNSC	TCGA-CQ-6223-01	FAT1	ENST00000441802.2	chr4	187560875:187560937:187584452:187584767:187627716:187630999,	187584453	187584767	187584693	187584693	Nonsense_Mutation	G	A	p.Q1114*
HNSC	TCGA-T3-A92N-01	HERPUD2	ENST00000438224.1	chr7	35677959:35678082:35707043:35707198:35733793:35734176,	35707044	35707198	35707179	35707179	Nonsense_Mutation	G	C	p.S120*
HNSC	TCGA-T3-A92N-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30653531	30653531	Nonsense_Mutation	G	A	p.R89*
HNSC	TCGA-T3-A92N-01	USP47	ENST00000399455.2,ENST00000539466.1,ENST00000527733.1,ENST00000339865.5	chr11	11924809:11924889:11926945:11927095:11941702:11941798,	11926946	11927095	11926970	11926970	Nonsense_Mutation	C	T	p.Q214*
HNSC	TCGA-T3-A92M-01	SLC5A2	ENST00000568188.1	chr16	31499358:31499494:31499703:31500369:31500443:31500659,	31499704	31500369	31500306	31500306	Nonsense_Mutation	C	A	p.Y462*
HNSC	TCGA-T3-A92M-01	SLC5A2	ENST00000330498.3	chr16	31500012:31500093:31500200:31500369:31500443:31500659,	31500201	31500369	31500306	31500306	Nonsense_Mutation	C	A	p.Y462*
HNSC	TCGA-T3-A92M-01	AGO3	ENST00000373191.4,ENST00000246314.6	chr1	36492714:36492899:36499774:36499934:36501777:36501868,	36499775	36499934	36499868	36499868	Nonsense_Mutation	C	G	p.S562*
HNSC	TCGA-T3-A92M-01	GPAM	ENST00000369425.1,ENST00000423155.1,ENST00000348367.4	chr10	113932727:113932824:113933456:113933603:113935357:113935471,	113933457	113933603	113933538	113933538	Nonsense_Mutation	G	C	p.S160*
HNSC	TCGA-T3-A92M-01	CCDC15	ENST00000344762.5,ENST00000529051.1	chr11	124857022:124858030:124861356:124861479:124862475:124862583,	124861357	124861479	124861477	124861477	Nonsense_Mutation	C	T	p.Q677*
HNSC	TCGA-T3-A92M-01	YTHDC2	ENST00000514720.1,ENST00000515883.1,ENST00000161863.4	chr5	112850968:112851059:112860677:112860874:112862282:112862400,	112860678	112860874	112860722	112860722	Nonsense_Mutation	C	G	p.S108*
HNSC	TCGA-T3-A92M-01	CPQ	ENST00000220763.5,ENST00000522617.1	chr8	98041696:98041722:98078236:98078438:98155247:98155416,	98078237	98078438	98078254	98078254	Nonsense_Mutation	C	A	p.Y357*
HNSC	TCGA-T3-A92M-01	KDM1A	ENST00000356634.3,ENST00000542151.1,ENST00000400181.4	chr1	23398616:23398690:23399784:23399896:23403720:23403853,	23399785	23399896	23399802	23399802	Nonsense_Mutation	C	G	p.S547*
HNSC	TCGA-T3-A92M-01	KDM1A	ENST00000465864.1	chr1	23398616:23398690:23399766:23399896:23403720:23403853,	23399767	23399896	23399802	23399802	Nonsense_Mutation	C	G	p.S547*
HNSC	TCGA-T3-A92M-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55254574	55254574	Nonsense_Mutation	G	A	p.Q221*
HNSC	TCGA-T3-A92M-01	ENOPH1	ENST00000505846.1,ENST00000273920.3,ENST00000509635.1	chr4	83375874:83376007:83378067:83378191:83381133:83382208,	83378068	83378191	83378153	83378153	Nonsense_Mutation	C	G	p.S203*
HNSC	TCGA-T3-A92M-01	FGD6	ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95531297:95531454:95535163:95535315:95546586:95546617,	95535164	95535315	95535261	95535261	Nonsense_Mutation	C	A	p.E914*
HNSC	TCGA-T3-A92M-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910797	29910797	Nonsense_Mutation	G	T	p.E113*
HNSC	TCGA-CV-5434-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54363472:54363693:54385194:54385390:54398613:54398828,	54385195	54385390	54385258	54385258	Nonsense_Mutation	C	T	p.R548*
HNSC	TCGA-CV-5434-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-CV-5434-01	ZNF451	ENST00000444273.2,ENST00000491832.2,ENST00000357489.3,ENST00000370706.4,ENST00000502749.1	chr6	56993526:56993638:56997839:56997990:56999541:56999668,	56997840	56997990	56997884	56997884	Nonsense_Mutation	C	T	p.R157*
HNSC	TCGA-CV-5434-01	KLK4	ENST00000324041.1,ENST00000602148.1	chr19	51410189:51410342:51411614:51411751:51411834:51412015,	51411615	51411751	51411651	51411651	Nonsense_Mutation	G	T	p.C192*
HNSC	TCGA-CV-5434-01	KLK4	ENST00000593885.1,ENST00000598305.1	chr19	51410189:51410342:51411614:51411747:51411834:51412015,	51411615	51411747	51411651	51411651	Nonsense_Mutation	G	T	p.C192*
HNSC	TCGA-CV-5434-01	KLK4	ENST00000599865.1	chr19	51410189:51410342:51411614:51412085:51412507:51412584,	51411615	51412085	51411651	51411651	Nonsense_Mutation	G	T	p.C192*
HNSC	TCGA-CQ-5331-01	GNPTAB	ENST00000299314.7	chr12	102151349:102151435:102153807:102153921:102154904:102155124,	102153808	102153921	102153834	102153834	Nonsense_Mutation	G	A	p.Q1075*
HNSC	TCGA-CQ-5331-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CQ-5331-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-QK-A6V9-01	ZNF326	ENST00000370447.3	chr1	90470691:90470803:90473170:90473309:90475646:90475845,	90473171	90473309	90473298	90473298	Nonsense_Mutation	C	T	p.R202*
HNSC	TCGA-QK-A6V9-01	ZNF326	ENST00000340281.4	chr1	90470691:90470803:90472903:90473309:90475646:90475845,	90472904	90473309	90473298	90473298	Nonsense_Mutation	C	T	p.R202*
HNSC	TCGA-CR-7379-01	SULF1	ENST00000260128.4,ENST00000528783.1,ENST00000419716.3,ENST00000529134.1,ENST00000402687.4,ENST00000458141.2	chr8	70475773:70475846:70476150:70476382:70488204:70488262,	70476151	70476382	70476367	70476367	Nonsense_Mutation	C	T	p.Q53*
HNSC	TCGA-CR-7379-01	SUV39H1	ENST00000453214.2,ENST00000376687.3,ENST00000337852.6	chrX	48558959:48559144:48564655:48564802:48564888:48565018,	48564656	48564802	48564736	48564736	Nonsense_Mutation	C	A	p.Y303*
HNSC	TCGA-CR-7379-01	NCOR2	ENST00000429285.2,ENST00000448614.1,ENST00000397355.1,ENST00000404121.2,ENST00000404621.1	chr12	124857005:124857156:124862782:124862930:124870290:124870433,	124862783	124862930	124862849	124862849	Nonsense_Mutation	C	A	p.E701*
HNSC	TCGA-HD-A6I0-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56482918	56482918	Nonsense_Mutation	C	A	p.E1972*
HNSC	TCGA-CN-4733-01	ZNF821	ENST00000562985.1,ENST00000563878.1,ENST00000562808.1,ENST00000566987.1	chr16	71898041:71898145:71898805:71898951:71913809:71913926,71898041:71898145:71898805:71898951:71901814:71901940,71898041:71898145:71898805:71898951:71901795:71901940,	71898806	71898951	71898871	71898871	Nonsense_Mutation	T	A	p.K83*
HNSC	TCGA-CV-7430-01	AGBL5	ENST00000487078.1,ENST00000489683.1,ENST00000477136.1,ENST00000323064.8,ENST00000360131.4	chr2	27276269:27276441:27276763:27276927:27277497:27277675,	27276764	27276927	27276859	27276859	Nonsense_Mutation	C	A	p.Y161*
HNSC	TCGA-CQ-A4CA-01	FUS	ENST00000487509.2,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31195181:31195323:31195529:31195717:31196259:31196500,	31195530	31195717	31195651	31195651	Nonsense_Mutation	C	T	p.Q153*
HNSC	TCGA-CQ-A4CA-01	RALGAPB	ENST00000461147.1,ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3	chr20	37198530:37198639:37199411:37199490:37202792:37202941,	37199412	37199490	37199427	37199427	Nonsense_Mutation	C	G	p.S1360*
HNSC	TCGA-CQ-5326-01	PBRM1	ENST00000356770.4	chr3	52668617:52668831:52675969:52676061:52677263:52677359,52668617:52668831:52675969:52676061:52678719:52678805,	52675970	52676061	52675991	52675991	Nonsense_Mutation	C	A	p.E324*
HNSC	TCGA-CQ-5326-01	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67817603:67817721:67817953:67818131:67818207:67818288,	67817954	67818131	67818101	67818101	Nonsense_Mutation	C	A	p.S795*
HNSC	TCGA-CQ-5326-01	TRPV4	ENST00000537083.1,ENST00000346520.2	chr12	110232133:110232292:110236418:110236717:110238422:110238563,	110236419	110236717	110236715	110236715	Nonsense_Mutation	C	A	p.E286*
HNSC	TCGA-CQ-5326-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43678403:43678528:43687304:43687355:43687780:43687886,	43687305	43687355	43687329	43687329	Nonsense_Mutation	G	T	p.E347*
HNSC	TCGA-CQ-5326-01	SLC15A2	ENST00000489886.1,ENST00000489711.1,ENST00000295605.2	chr3	121641066:121641149:121641621:121641708:121641886:121641976,	121641622	121641708	121641670	121641670	Nonsense_Mutation	C	T	p.R277*
HNSC	TCGA-CQ-5326-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CQ-5326-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CQ-5326-01	TANC1	ENST00000454300.1	chr2	160006880:160007067:160019793:160020057:160025760:160025862,159992709:159992809:160019793:160020057:160025760:160025862,	160019794	160020057	160019983	160019983	Nonsense_Mutation	C	G	p.S291*
HNSC	TCGA-D6-A4ZB-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71235240	71235240	Nonsense_Mutation	C	G	p.S818*
HNSC	TCGA-D6-A4ZB-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71235240	71235240	Nonsense_Mutation	C	G	p.S818*
HNSC	TCGA-D6-A4ZB-01	FNDC3A	ENST00000398316.3,ENST00000484074.1,ENST00000492622.2,ENST00000541916.1	chr13	49712882:49712941:49719913:49720071:49741379:49741439,	49719914	49720071	49720032	49720032	Nonsense_Mutation	C	G	p.S313*
HNSC	TCGA-D6-A4ZB-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93691889:93692006:93697982:93698150:93701804:93701947,	93697983	93698150	93698028	93698028	Nonsense_Mutation	C	T	p.Q779*
HNSC	TCGA-CV-A460-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104337639	104337639	Nonsense_Mutation	C	G	p.Y435*
HNSC	TCGA-CV-A460-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26951250:26951408:26955282:26955577:26958496:26958696,	26955283	26955577	26955288	26955288	Nonsense_Mutation	G	T	p.S1530*
HNSC	TCGA-CQ-A4CE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
HNSC	TCGA-CQ-A4CE-01	DMP1	ENST00000339673.6	chr4	88580371:88580404:88580582:88580630:88583113:88585513,	88580583	88580630	88580599	88580599	Nonsense_Mutation	C	A	p.S51*
HNSC	TCGA-CQ-6222-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
HNSC	TCGA-CV-5978-01	TRPC3	ENST00000379645.3,ENST00000264811.5,ENST00000506449.1	chr4	122833031:122833248:122835934:122836099:122846172:122846361,	122835935	122836099	122836027	122836027	Nonsense_Mutation	G	A	p.Q344*
HNSC	TCGA-CV-5978-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40728768:40728959:40734095:40734256:40740554:40740725,	40734096	40734256	40734242	40734242	Nonsense_Mutation	C	G	p.S2032*
HNSC	TCGA-CR-7398-01	MYOM1	ENST00000356443.4,ENST00000400569.3	chr18	3126698:3126895:3129229:3129517:3131372:3131494,	3129230	3129517	3129467	3129467	Nonsense_Mutation	C	A	p.G853*
HNSC	TCGA-CR-7398-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881512	48881512	Nonsense_Mutation	G	A	p.W78*
HNSC	TCGA-CR-7398-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103297354:103297566:103297740:103298009:103298587:103298845,	103297741	103298009	103297762	103297762	Nonsense_Mutation	G	C	p.Y1821*
HNSC	TCGA-CR-7398-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44219473:44219621:44219735:44220004:44220781:44221115,	44219736	44220004	44219990	44219990	Nonsense_Mutation	A	T	p.K573*
HNSC	TCGA-CN-5356-01	MAMDC4	ENST00000317446.2,ENST00000485732.1,ENST00000445819.1	chr9	139748228:139748359:139748443:139748528:139748662:139748788,	139748444	139748528	139748462	139748462	Nonsense_Mutation	C	T	p.R202*
HNSC	TCGA-CN-5356-01	CD8A	ENST00000409511.2,ENST00000538832.1,ENST00000283635.3	chr2	87015652:87015683:87016445:87016556:87016762:87016873,	87016446	87016556	87016514	87016514	Nonsense_Mutation	C	T	p.W186*
HNSC	TCGA-CN-5356-01	TANC1	ENST00000470074.1,ENST00000263635.6,ENST00000454300.1	chr2	160082198:160082290:160084329:160084476:160085306:160085407,	160084330	160084476	160084427	160084427	Nonsense_Mutation	T	A	p.L1334*
HNSC	TCGA-CN-5356-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150925209	150925209	Nonsense_Mutation	C	A	p.E1827*
HNSC	TCGA-CN-5356-01	ATP12A	ENST00000381946.3	chr13	25264741:25264859:25265119:25265388:25266566:25266765,	25265120	25265388	25265203	25265203	Nonsense_Mutation	G	T	p.E301*
HNSC	TCGA-CN-5356-01	ATP12A	ENST00000218548.6	chr13	25264741:25264859:25265101:25265388:25266566:25266765,	25265102	25265388	25265203	25265203	Nonsense_Mutation	G	T	p.E301*
HNSC	TCGA-CN-5356-01	ANXA7	ENST00000372919.4,ENST00000372921.5,ENST00000535178.1	chr10	75135905:75135975:75138668:75138781:75139636:75139712,	75138669	75138781	75138725	75138725	Nonsense_Mutation	T	A	p.K408*
HNSC	TCGA-CR-7401-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000458012.2,ENST00000537335.1,ENST00000333990.6,ENST00000448770.1,ENST00000263331.5,ENST00000417433.2	chr2	113330218:113330335:113331138:113331392:113332423:113332666,	113331139	113331392	113331325	113331325	Nonsense_Mutation	C	T	p.Q820*
HNSC	TCGA-CQ-6228-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579386	7579386	Nonsense_Mutation	T	A	p.K101*
HNSC	TCGA-CQ-6228-01	USP40	ENST00000450966.1,ENST00000427112.2,ENST00000251722.6	chr2	234457746:234457875:234460021:234460165:234463025:234463172,	234460022	234460165	234460155	234460155	Nonsense_Mutation	A	C	p.L235*
HNSC	TCGA-CQ-6228-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132184838:132184914:132185142:132185238:132186013:132186157,	132185143	132185238	132185174	132185174	Nonsense_Mutation	C	G	p.S667*
HNSC	TCGA-P3-A6T0-01	PSPC1	ENST00000492741.1,ENST00000471658.1	chr13	20251863:20251963:20304378:20304484:20315704:20315789,	20304379	20304484	20304417	20304417	Nonsense_Mutation	G	A	p.R374*
HNSC	TCGA-P3-A6T0-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542660	187542660	Nonsense_Mutation	G	A	p.Q1694*
HNSC	TCGA-P3-A6T0-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73676804	73676804	Nonsense_Mutation	C	G	p.Y1049*
HNSC	TCGA-CN-4740-01	RBM17	ENST00000432931.1	chr10	6131033:6131156:6139010:6139151:6143233:6143350,	6139011	6139151	6139143	6139143	Nonsense_Mutation	C	T	p.Q39*
HNSC	TCGA-CR-5243-01	ENDOV	ENST00000522577.1	chr17	78388985:78389050:78389449:78389621:78396005:78396042,78388985:78389050:78389449:78389621:78397319:78397387,	78389450	78389621	78389501	78389501	Nonsense_Mutation	G	A	p.W36*
HNSC	TCGA-CR-5243-01	PKD2	ENST00000237596.2	chr4	88967793:88968022:88973142:88973310:88977237:88977419,	88973143	88973310	88973183	88973183	Nonsense_Mutation	C	G	p.S530*
HNSC	TCGA-CR-5243-01	FGD5	ENST00000468662.1,ENST00000476851.1,ENST00000285046.5,ENST00000543601.1	chr3	14958755:14958839:14960260:14960340:14963424:14963524,	14960261	14960340	14960293	14960293	Nonsense_Mutation	C	A	p.Y1174*
HNSC	TCGA-D6-6516-01	PGAP1	ENST00000470179.1,ENST00000354764.4,ENST00000423035.1	chr2	197712670:197712761:197729710:197729804:197735664:197735703,	197729711	197729804	197729786	197729786	Nonsense_Mutation	C	A	p.G596*
HNSC	TCGA-D6-6516-01	NCOR2	ENST00000461081.1	chr12	124817675:124817825:124818969:124819826:124820028:124820178,	124818970	124819826	124819764	124819764	Nonsense_Mutation	G	A	p.Q2117*
HNSC	TCGA-D6-6516-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1	chr12	124818969:124819163:124819680:124819826:124820028:124820178,	124819681	124819826	124819764	124819764	Nonsense_Mutation	G	A	p.Q2117*
HNSC	TCGA-D6-6516-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324148	31324148	Nonsense_Mutation	G	A	p.Q139*
HNSC	TCGA-D6-6516-01	HLA-B	ENST00000434333.1,ENST00000412585.2	chr6	31323283:31323369:31323943:31324219:31324464:31324569,	31323944	31324219	31324148	31324148	Nonsense_Mutation	G	A	p.Q139*
HNSC	TCGA-D6-6516-01	TROAP	ENST00000546776.1,ENST00000547807.1,ENST00000551245.1,ENST00000550346.1,ENST00000551192.1,ENST00000546735.1,ENST00000257909.3,ENST00000548817.1	chr12	49719529:49719667:49719858:49719941:49720450:49720503,	49719859	49719941	49719907	49719907	Nonsense_Mutation	C	T	p.Q228*
HNSC	TCGA-D6-6516-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16437494	16437494	Nonsense_Mutation	C	T	p.W233*
HNSC	TCGA-D6-6516-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	121000346:121000920:121008129:121008731:121016263:121016825,	121008130	121008731	121008716	121008716	Nonsense_Mutation	C	A	p.Y1176*
HNSC	TCGA-D6-6516-01	SMARCD1	ENST00000548573.1,ENST00000381513.4,ENST00000394963.4,ENST00000551966.1	chr12	50482307:50482420:50483666:50483768:50484023:50484109,	50483667	50483768	50483706	50483706	Nonsense_Mutation	C	T	p.Q271*
HNSC	TCGA-D6-6516-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-D6-6516-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-D6-6516-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559487	210559487	Nonsense_Mutation	G	T	p.E865*
HNSC	TCGA-D6-6516-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559487	210559487	Nonsense_Mutation	G	T	p.E865*
HNSC	TCGA-D6-6516-01	APMAP	ENST00000451442.1,ENST00000217456.2,ENST00000447138.1	chr20	24952095:24952212:24954280:24954373:24959402:24959518,	24954281	24954373	24954320	24954320	Nonsense_Mutation	C	A	p.E128*
HNSC	TCGA-D6-6516-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9563375:9563548:9570154:9570681:9577061:9577189,	9570155	9570681	9570373	9570373	Nonsense_Mutation	A	T	p.L452*
HNSC	TCGA-D6-6516-01	CATSPERG	ENST00000410018.1	chr19	38845349:38845487:38847123:38847183:38848917:38848968,	38847124	38847183	38847129	38847129	Nonsense_Mutation	C	T	p.Q381*
HNSC	TCGA-D6-6516-01	ZBTB48	ENST00000488936.1	chr1	6640600:6641359:6642117:6642359:6645978:6646090,6640147:6640196:6642117:6642359:6645978:6646090,	6642118	6642359	6642211	6642211	Nonsense_Mutation	C	T	p.R262*
HNSC	TCGA-D6-6516-01	BCHE	ENST00000264381.3	chr3	165490871:165491294:165503932:165504099:165547304:165548829,	165503933	165504099	165503942	165503942	Nonsense_Mutation	C	A	p.E559*
HNSC	TCGA-D6-6516-01	BAZ2A	ENST00000547650.1	chr12	57000416:57000517:57003519:57003721:57003897:57003999,	57003520	57003721	57003658	57003658	Nonsense_Mutation	G	A	p.R622*
HNSC	TCGA-D6-6516-01	BAZ2A	ENST00000551812.1,ENST00000549884.1,ENST00000379441.3,ENST00000179765.5	chr12	57000416:57000517:57003519:57003730:57003897:57003999,	57003520	57003730	57003658	57003658	Nonsense_Mutation	G	A	p.R622*
HNSC	TCGA-D6-6516-01	LCK	ENST00000333070.4,ENST00000469765.1,ENST00000469956.1,ENST00000336890.5	chr1	32741549:32741664:32741937:32742090:32742207:32742387,	32741938	32742090	32742008	32742008	Nonsense_Mutation	G	A	p.W234*
HNSC	TCGA-D6-6516-01	CLK2	ENST00000368361.4,ENST00000355560.4,ENST00000497188.1,ENST00000361168.5,ENST00000476983.1,ENST00000536801.1	chr1	155235650:155235745:155236519:155236686:155237800:155237917,	155236520	155236686	155236562	155236562	Nonsense_Mutation	G	A	p.Q266*
HNSC	TCGA-D6-6516-01	C1orf198	ENST00000366663.5,ENST00000523410.1,ENST00000470540.1	chr1	230975366:230975654:230979099:230979642:230991413:230991464,	230979100	230979642	230979405	230979405	Nonsense_Mutation	G	A	p.Q208*
HNSC	TCGA-CV-A6JE-01	FTO	ENST00000394647.3,ENST00000464071.1,ENST00000471389.1	chr16	53907697:53907777:53913755:53913899:53922743:53922863,	53913756	53913899	53913760	53913760	Nonsense_Mutation	C	G	p.S327*
HNSC	TCGA-CV-A6JE-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000557005.1	chr14	64496612:64496777:64497733:64498075:64514717:64514873,	64497734	64498075	64497902	64497902	Nonsense_Mutation	A	T	p.K2350*
HNSC	TCGA-CV-A6JE-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069499	29069499	Nonsense_Mutation	G	A	p.W239*
HNSC	TCGA-CV-A45Z-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637201	176637201	Nonsense_Mutation	A	T	p.K601*
HNSC	TCGA-CV-A45Z-01	ACE	ENST00000290866.4,ENST00000290863.6,ENST00000584865.1,ENST00000490216.2,ENST00000428043.1,ENST00000413513.3,ENST00000582761.1,ENST00000579314.1	chr17	61566008:61566152:61566301:61566493:61568314:61568412,	61566302	61566493	61566339	61566339	Nonsense_Mutation	C	G	p.Y255*
HNSC	TCGA-CV-A45Z-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-A45Z-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-A45Z-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42360920	42360920	Nonsense_Mutation	C	A	p.S618*
HNSC	TCGA-CV-A45Z-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765424	50765424	Nonsense_Mutation	C	A	p.G744*
HNSC	TCGA-CV-A45Z-01	CYP2B6	ENST00000598834.1	chr19	41497308:41497381:41509905:41510068:41510201:41510351,	41509906	41510068	41509945	41509945	Nonsense_Mutation	G	T	p.G71*
HNSC	TCGA-CQ-A4CG-01	TMTC2	ENST00000321196.3,ENST00000551915.1,ENST00000549919.1,ENST00000548305.1	chr12	83250788:83251359:83289596:83290425:83324209:83324324,	83289597	83290425	83289634	83289634	Nonsense_Mutation	T	A	p.L225*
HNSC	TCGA-CN-6011-01	AUTS2	ENST00000406775.2,ENST00000418686.1,ENST00000342771.4	chr7	70250940:70251024:70252194:70252417:70254733:70254912,	70252195	70252417	70252204	70252204	Nonsense_Mutation	C	G	p.S773*
HNSC	TCGA-CN-6011-01	LHPP	ENST00000368839.1,ENST00000368842.5	chr10	126150411:126150556:126172707:126172895:126176990:126177144,	126172708	126172895	126172787	126172787	Nonsense_Mutation	C	T	p.Q69*
HNSC	TCGA-CN-6011-01	GPATCH2L	ENST00000312858.5,ENST00000554125.1,ENST00000261530.7	chr14	76618278:76618334:76620696:76621368:76633005:76633070,	76620697	76621368	76621245	76621245	Nonsense_Mutation	C	G	p.S180*
HNSC	TCGA-CN-6011-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79292084:79292255:79294003:79294129:79296143:79296517,	79294004	79294129	79294085	79294085	Nonsense_Mutation	G	A	p.Q848*
HNSC	TCGA-CN-6011-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120396	12120396	Nonsense_Mutation	C	G	p.S123*
HNSC	TCGA-CN-6011-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16674961:16675259:16676139:16676263:16680055:16680213,	16676140	16676263	16676206	16676206	Nonsense_Mutation	G	A	p.R1534*
HNSC	TCGA-HD-7753-01	TOM1	ENST00000382034.5,ENST00000404284.2	chr22	35723263:35723380:35726339:35726473:35728973:35729007,35723263:35723380:35726339:35726473:35727288:35727488,	35726340	35726473	35726367	35726367	Nonsense_Mutation	C	T	p.Q198*
HNSC	TCGA-HD-7753-01	MID1	ENST00000380787.1	chrX	10491131:10491227:10534927:10535643:10588329:10588459,10491131:10491227:10534927:10535643:10557626:10557949,10491131:10491227:10534927:10535643:10851672:10851762,	10534928	10535643	10535569	10535569	Nonsense_Mutation	C	A	p.E7*
HNSC	TCGA-CR-6473-01	MFAP3	ENST00000436816.1	chr5	153418533:153418571:153429116:153429577:153432479:153432512,	153429117	153429577	153429537	153429537	Nonsense_Mutation	G	A	p.W85*
HNSC	TCGA-C9-A480-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-C9-A480-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-DQ-5629-01	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27752188	27752188	Nonsense_Mutation	C	G	p.S857*
HNSC	TCGA-DQ-5629-01	KCNK10	ENST00000340700.5,ENST00000312350.5,ENST00000319231.5	chr14	88693718:88693879:88707046:88707164:88729545:88729895,	88707047	88707164	88707125	88707125	Nonsense_Mutation	C	A	p.G143*
HNSC	TCGA-DQ-5629-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784525	54784525	Nonsense_Mutation	G	C	p.S661*
HNSC	TCGA-DQ-5629-01	MPP5	ENST00000261681.4,ENST00000555925.1	chr14	67768105:67768183:67768688:67768835:67769126:67769288,	67768689	67768835	67768785	67768785	Nonsense_Mutation	G	T	p.G251*
HNSC	TCGA-DQ-5629-01	SLC17A3	ENST00000397060.4,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25850686:25850848:25850986:25851105:25855371:25855458,	25850987	25851105	25851036	25851036	Nonsense_Mutation	C	T	p.W261*
HNSC	TCGA-CV-6941-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-6941-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-6941-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832598	61832598	Nonsense_Mutation	G	A	p.Q2681*
HNSC	TCGA-CV-6941-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060238	56060238	Nonsense_Mutation	G	A	p.R175*
HNSC	TCGA-CV-7432-01	RGS7	ENST00000440928.1,ENST00000366562.4,ENST00000407727.1,ENST00000366563.1,ENST00000348120.2,ENST00000366565.1,ENST00000331110.7,ENST00000366564.1,ENST00000446183.2,ENST00000401882.1	chr1	240969439:240969626:240975217:240975343:240976917:240977028,	240975218	240975343	240975267	240975267	Nonsense_Mutation	C	A	p.E345*
HNSC	TCGA-BA-7269-01	ZNF142	ENST00000433921.1,ENST00000450765.1,ENST00000411696.2,ENST00000449707.1	chr2	219506750:219509787:219510893:219511071:219513357:219514182,	219510894	219511071	219510940	219510940	Nonsense_Mutation	T	A	p.K469*
HNSC	TCGA-BA-7269-01	RPS6KC1	ENST00000543470.1,ENST00000366959.3,ENST00000543354.1,ENST00000366960.3,ENST00000490299.1	chr1	213434900:213434983:213436063:213436159:213445866:213445887,	213436064	213436159	213436154	213436154	Nonsense_Mutation	C	T	p.Q1029*
HNSC	TCGA-IQ-7630-01	NUMA1	ENST00000545721.1,ENST00000358965.6,ENST00000541584.1	chr11	71720313:71720433:71721831:71721900:71723940:71723972,	71721832	71721900	71721849	71721849	Nonsense_Mutation	G	A	p.Q1568*
HNSC	TCGA-IQ-7630-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000347330.5,ENST00000338641.4,ENST00000403999.3,ENST00000432151.1	chr22	30057193:30057328:30060978:30061053:30064321:30064435,	30060979	30061053	30061031	30061031	Nonsense_Mutation	C	G	p.S288*
HNSC	TCGA-IQ-7630-01	FBXO27	ENST00000509137.2,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39517509:39517645:39521668:39521764:39521848:39521957,	39521669	39521764	39521762	39521762	Nonsense_Mutation	C	T	p.W160*
HNSC	TCGA-D6-6517-01	GTF2E1	ENST00000283875.5	chr3	120461608:120461641:120469369:120469847:120489574:120489776,	120469370	120469847	120469672	120469672	Nonsense_Mutation	C	G	p.Y91*
HNSC	TCGA-H7-A6C4-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-H7-A6C4-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-H7-A6C4-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
HNSC	TCGA-BA-6868-01	TAOK3	ENST00000537305.1,ENST00000419821.2,ENST00000392533.3,ENST00000538601.1	chr12	118639226:118639268:118650718:118650800:118651821:118651915,	118650719	118650800	118650751	118650751	Nonsense_Mutation	G	A	p.Q263*
HNSC	TCGA-BA-6868-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474059	103474059	Nonsense_Mutation	G	T	p.S560*
HNSC	TCGA-CR-7399-01	PAPPA	ENST00000328252.3	chr9	118969734:118969880:118973917:118974211:118982215:118982408,	118973918	118974211	118973930	118973930	Nonsense_Mutation	T	A	p.L546*
HNSC	TCGA-CR-7399-01	AZGP1	ENST00000292401.4	chr7	99564890:99564909:99565777:99566053:99569368:99569629,	99565778	99566053	99565930	99565930	Nonsense_Mutation	C	T	p.W151*
HNSC	TCGA-CR-7399-01	CNTROB	ENST00000380255.3,ENST00000576723.1,ENST00000571632.1,ENST00000576536.1,ENST00000565740.1,ENST00000563694.1,ENST00000380262.3	chr17	7851233:7851297:7851474:7851645:7851804:7851933,	7851475	7851645	7851510	7851510	Nonsense_Mutation	C	T	p.Q749*
HNSC	TCGA-CR-7399-01	SMYD2	ENST00000491455.1,ENST00000366957.5,ENST00000471645.1,ENST00000415093.2	chr1	214478534:214478593:214488104:214488215:214491421:214491482,	214488105	214488215	214488115	214488115	Nonsense_Mutation	G	A	p.W83*
HNSC	TCGA-CR-7399-01	CEP170	ENST00000366542.1,ENST00000521911.1	chr1	243336112:243336148:243349080:243349374:243349560:243349582,	243349081	243349374	243349134	243349134	Nonsense_Mutation	C	A	p.E505*
HNSC	TCGA-MT-A67A-01	NOTCH1	ENST00000277541.6	chr9	139409934:139410168:139410432:139410546:139411723:139411837,	139410433	139410546	139410452	139410452	Nonsense_Mutation	G	T	p.Y550*
HNSC	TCGA-MT-A67A-01	SAFB	ENST00000454510.1,ENST00000589863.1,ENST00000538656.1,ENST00000588852.1,ENST00000592224.1,ENST00000433404.1,ENST00000292123.5	chr19	5664139:5664170:5664407:5664450:5667056:5667175,	5664408	5664450	5664419	5664419	Nonsense_Mutation	C	G	p.S768*
HNSC	TCGA-MT-A67A-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-MT-A67A-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CN-6019-01	CLVS1	ENST00000325897.4	chr8	62200538:62200697:62212235:62212841:62289163:62289338,	62212236	62212841	62212794	62212794	Nonsense_Mutation	C	A	p.Y136*
HNSC	TCGA-CN-6019-01	CLVS1	ENST00000521189.1	chr8	62200538:62200697:62212235:62212837:62289163:62289338,	62212236	62212837	62212794	62212794	Nonsense_Mutation	C	A	p.Y136*
HNSC	TCGA-CN-6019-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225362469:225362566:225365079:225365204:225367681:225367789,	225365080	225365204	225365129	225365129	Nonsense_Mutation	T	A	p.K521*
HNSC	TCGA-H7-7774-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113170974	113170974	Nonsense_Mutation	C	T	p.W2302*
HNSC	TCGA-CV-6959-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659245	86659245	Nonsense_Mutation	C	T	p.R335*
HNSC	TCGA-CV-6959-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CV-6959-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-CR-7382-01	ARHGAP9	ENST00000430041.2,ENST00000550440.1,ENST00000356411.2,ENST00000393791.3,ENST00000546200.1,ENST00000550130.1,ENST00000552953.1,ENST00000393797.2	chr12	57866458:57866471:57867385:57867491:57867824:57867956,	57867386	57867491	57867440	57867440	Nonsense_Mutation	G	C	p.S747*
HNSC	TCGA-CR-7382-01	ARHGAP9	ENST00000550288.1	chr12	57866458:57866471:57867385:57867474:57867824:57867956,	57867386	57867474	57867440	57867440	Nonsense_Mutation	G	C	p.S747*
HNSC	TCGA-CR-7382-01	ZKSCAN5	ENST00000454175.1	chr7	99110075:99110214:99117449:99117532:99123435:99123878,	99117450	99117532	99117510	99117510	Nonsense_Mutation	C	A	p.S205*
HNSC	TCGA-D6-A74Q-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579485	7579485	Nonsense_Mutation	C	A	p.E68*
HNSC	TCGA-D6-A74Q-01	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71800476:71801025:71802247:71802448:71804098:71804152,	71802248	71802448	71802361	71802361	Nonsense_Mutation	C	A	p.E1087*
HNSC	TCGA-D6-A74Q-01	DCBLD1	ENST00000296955.8,ENST00000338728.5,ENST00000368503.4	chr6	117842687:117842739:117846524:117846597:117853422:117853556,	117846525	117846597	117846586	117846586	Nonsense_Mutation	G	T	p.G192*
HNSC	TCGA-D6-A74Q-01	ATG4C	ENST00000317868.4,ENST00000371120.3,ENST00000443289.1,ENST00000371118.1	chr1	63270842:63270926:63282245:63282479:63284675:63284736,	63282246	63282479	63282341	63282341	Nonsense_Mutation	A	T	p.R86*
HNSC	TCGA-D6-A74Q-01	ENOX1	ENST00000261488.6,ENST00000412891.1	chr13	43810771:43810874:43839533:43839590:43843605:43843713,	43839534	43839590	43839571	43839571	Nonsense_Mutation	A	T	p.L525*
HNSC	TCGA-H7-8501-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000367122.2,ENST00000355585.4	chr6	158509691:158509804:158510870:158510979:158513957:158514136,	158510871	158510979	158510943	158510943	Nonsense_Mutation	G	T	p.E1177*
HNSC	TCGA-H7-8501-01	GNL2	ENST00000479255.1,ENST00000373062.3,ENST00000462812.1	chr1	38032421:38032608:38033273:38033365:38033875:38033958,	38033274	38033365	38033324	38033324	Nonsense_Mutation	C	A	p.E665*
HNSC	TCGA-H7-8501-01	TTC37	ENST00000502768.1,ENST00000358746.2	chr5	94818297:94818335:94820427:94820549:94826611:94826740,	94820428	94820549	94820490	94820490	Nonsense_Mutation	G	A	p.Q1331*
HNSC	TCGA-H7-8501-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579521	7579521	Nonsense_Mutation	C	A	p.E56*
HNSC	TCGA-H7-8501-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-H7-8501-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
HNSC	TCGA-D6-A6EN-01	POU6F2	ENST00000416452.1	chr7	39472675:39472882:39500145:39500314:39503780:39504309,	39500146	39500314	39500196	39500196	Nonsense_Mutation	C	T	p.R485*
HNSC	TCGA-D6-A6EN-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557391	214557391	Nonsense_Mutation	G	A	p.Q603*
HNSC	TCGA-HD-8314-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150029326	150029326	Nonsense_Mutation	G	T	p.E741*
HNSC	TCGA-D6-A6EK-01	KLC4	ENST00000470728.1	chr6	43029048:43029331:43030720:43030885:43033357:43033439,	43030721	43030885	43030739	43030739	Nonsense_Mutation	G	T	p.E115*
HNSC	TCGA-D6-A6EK-01	KLC4	ENST00000467906.1	chr6	43029048:43029331:43030623:43030885:43033357:43033439,	43030624	43030885	43030739	43030739	Nonsense_Mutation	G	T	p.E115*
HNSC	TCGA-D6-A6EK-01	KLC4	ENST00000347162.5,ENST00000458460.2,ENST00000479388.1,ENST00000394058.1,ENST00000481499.1,ENST00000259708.3,ENST00000394056.2	chr6	43029048:43029331:43030654:43030885:43033357:43033439,	43030655	43030885	43030739	43030739	Nonsense_Mutation	G	T	p.E115*
HNSC	TCGA-D6-A6EK-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910587	29910587	Nonsense_Mutation	G	T	p.E43*
HNSC	TCGA-D6-A6EK-01	SETD5	ENST00000466242.1,ENST00000413704.1,ENST00000493918.1,ENST00000402198.1,ENST00000302463.6,ENST00000399686.2,ENST00000407969.1,ENST00000402466.1,ENST00000406341.1	chr3	9506108:9506356:9512142:9512613:9514919:9515056,	9512143	9512613	9512475	9512475	Nonsense_Mutation	T	A	p.C921*
HNSC	TCGA-D6-A6EK-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30024834:30025019:30025297:30025517:30026477:30026586,	30025298	30025517	30025364	30025364	Nonsense_Mutation	C	T	p.W557*
HNSC	TCGA-CN-6989-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122837272:122837333:122838999:122839103:122839661:122839859,	122839000	122839103	122839067	122839067	Nonsense_Mutation	G	A	p.R414*
HNSC	TCGA-CN-6989-01	FNBP4	ENST00000263773.5	chr11	47738778:47739064:47741480:47741638:47744527:47744868,	47741481	47741638	47741494	47741494	Nonsense_Mutation	G	A	p.Q984*
HNSC	TCGA-CN-6989-01	FAT1	ENST00000441802.2	chr4	187557178:187557389:187557738:187558068:187560875:187560937,	187557739	187558068	187557927	187557927	Nonsense_Mutation	G	A	p.R1262*
HNSC	TCGA-CN-6989-01	SORBS3	ENST00000517535.1,ENST00000517962.1,ENST00000240123.7,ENST00000428103.1	chr8	22428456:22428734:22429230:22429334:22429852:22429959,	22429231	22429334	22429318	22429318	Nonsense_Mutation	C	T	p.Q611*
HNSC	TCGA-BB-A5HU-01	SSBP2	ENST00000507655.1,ENST00000509743.2,ENST00000504174.1,ENST00000320672.4,ENST00000507472.1,ENST00000512098.1,ENST00000509013.2	chr5	80770314:80770381:80809446:80809536:80911291:80911376,80785068:80785128:80809446:80809536:80911291:80911376,	80809447	80809536	80809449	80809449	Nonsense_Mutation	G	A	p.Q124*
HNSC	TCGA-BB-A5HU-01	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000529725.1,ENST00000394227.3,ENST00000527525.1	chr11	65417608:65417663:65417871:65417950:65418039:65418058,	65417872	65417950	65417892	65417892	Nonsense_Mutation	C	G	p.S975*
HNSC	TCGA-BB-A5HU-01	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36270066	36270066	Nonsense_Mutation	C	T	p.Q402*
HNSC	TCGA-BB-A5HU-01	TMEM51	ENST00000451326.2	chr1	15536985:15537058:15541390:15541927:15545821:15545842,15480284:15480450:15541390:15541927:15545821:15545842,15479072:15479280:15541390:15541927:15545821:15545842,	15541391	15541927	15541866	15541866	Nonsense_Mutation	G	T	p.E95*
HNSC	TCGA-CQ-7064-01	PIGT	ENST00000543458.2	chr20	44044822:44044983:44045156:44045294:44047934:44048035,	44045157	44045294	44045292	44045292	Nonsense_Mutation	C	A	p.S108*
HNSC	TCGA-CQ-7064-01	PIGT	ENST00000535404.1,ENST00000372689.5	chr20	44044822:44044983:44045156:44045334:44047934:44048035,44044822:44044983:44045156:44045334:44047491:44047619,	44045157	44045334	44045292	44045292	Nonsense_Mutation	C	A	p.S108*
HNSC	TCGA-CQ-7064-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	152027685:152027824:152055671:152055760:152132710:152132884,	152055672	152055760	152055756	152055756	Nonsense_Mutation	G	A	p.R56*
HNSC	TCGA-CQ-7064-01	ARNT2	ENST00000533983.1,ENST00000527771.1,ENST00000303329.4	chr15	80873579:80873745:80883908:80884045:80885940:80886234,	80883909	80884045	80884001	80884001	Nonsense_Mutation	G	T	p.E660*
HNSC	TCGA-CV-6937-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911172	29911172	Nonsense_Mutation	G	A	p.W157*
HNSC	TCGA-CV-7423-01	KLHL4	ENST00000373114.4,ENST00000373119.4	chrX	86872934:86873131:86877210:86877423:86880609:86880796,	86877211	86877423	86877396	86877396	Nonsense_Mutation	C	A	p.Y370*
HNSC	TCGA-CV-7423-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574012	7574012	Nonsense_Mutation	C	A	p.E339*
HNSC	TCGA-CV-7254-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408088	130408088	Nonsense_Mutation	C	A	p.E1273*
HNSC	TCGA-CV-7254-01	TJP2	ENST00000535702.1	chr9	71864290:71864401:71865950:71866280:71867730:71867816,71862927:71863140:71865950:71866280:71867730:71867816,	71865951	71866280	71866155	71866155	Nonsense_Mutation	G	T	p.E1066*
HNSC	TCGA-CV-7254-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CV-7254-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
HNSC	TCGA-CR-6488-01	DDX19A	ENST00000443119.2,ENST00000569771.1,ENST00000566574.1,ENST00000569319.1,ENST00000575878.1,ENST00000417604.2,ENST00000302243.7	chr16	70400526:70400764:70404125:70404288:70405274:70405466,	70404126	70404288	70404240	70404240	Nonsense_Mutation	C	T	p.R379*
HNSC	TCGA-CR-6488-01	RFX2	ENST00000359161.3,ENST00000592546.1,ENST00000303657.5	chr19	6002732:6002881:6004211:6004309:6007022:6007177,	6004212	6004309	6004277	6004277	Nonsense_Mutation	T	A	p.K479*
HNSC	TCGA-CR-6488-01	IQUB	ENST00000466202.1,ENST00000469057.1,ENST00000324698.6	chr7	123097434:123097620:123101410:123101659:123104886:123105063,	123101411	123101659	123101543	123101543	Nonsense_Mutation	A	T	p.C625*
HNSC	TCGA-CR-7377-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
HNSC	TCGA-CR-7371-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511663	169511663	Nonsense_Mutation	T	A	p.K894*
HNSC	TCGA-CR-7371-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000357304.4	chr9	134305531:134305646:134308003:134308181:134312006:134312109,	134308004	134308181	134308156	134308156	Nonsense_Mutation	A	T	p.K90*
HNSC	TCGA-CR-7371-01	ATP1B3	ENST00000462082.1	chr3	141595696:141595752:141622461:141622590:141626008:141626116,141595696:141595752:141622461:141622590:141644372:141644485,	141622462	141622590	141622516	141622516	Nonsense_Mutation	C	G	p.S41*
HNSC	TCGA-CR-7371-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195451995	195451995	Nonsense_Mutation	C	G	p.S174*
HNSC	TCGA-CR-7371-01	CALB2	ENST00000302628.4,ENST00000562305.1	chr16	71392696:71392789:71406055:71406132:71408647:71408737,	71406056	71406132	71406097	71406097	Nonsense_Mutation	C	T	p.Q46*
HNSC	TCGA-CR-7371-01	AIF1L	ENST00000372314.3,ENST00000372309.3,ENST00000372312.3,ENST00000372301.2,ENST00000247291.3	chr9	133989963:133990005:133993142:133993305:133995621:133995730,	133993143	133993305	133993218	133993218	Nonsense_Mutation	C	G	p.S119*
HNSC	TCGA-CR-7371-01	AIF1L	ENST00000372297.2,ENST00000372300.1	chr9	133989963:133990005:133993142:133993234:133995621:133995730,	133993143	133993234	133993218	133993218	Nonsense_Mutation	C	G	p.S119*
HNSC	TCGA-CR-7371-01	MIPOL1	ENST00000539062.2,ENST00000556451.1,ENST00000327441.7,ENST00000396294.2,ENST00000545536.1,ENST00000554930.1,ENST00000537471.1	chr14	37739624:37739730:37754522:37754652:37777260:37777294,	37754523	37754652	37754564	37754564	Nonsense_Mutation	G	T	p.E179*
HNSC	TCGA-WA-A7GZ-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48556320:48556477:48559636:48559890:48563843:48564036,	48559637	48559890	48559723	48559723	Nonsense_Mutation	C	A	p.C4628*
HNSC	TCGA-WA-A7GZ-01	FAM45A	ENST00000487888.1,ENST00000361432.2	chr10	120871360:120871440:120877030:120877179:120879852:120879964,	120877031	120877179	120877149	120877149	Nonsense_Mutation	C	T	p.R151*
HNSC	TCGA-CV-7568-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266848	6266848	Nonsense_Mutation	G	A	p.R172*
HNSC	TCGA-CV-7568-01	SLC43A2	ENST00000572135.1,ENST00000574743.1,ENST00000571650.1,ENST00000382147.4,ENST00000301335.5	chr17	1518272:1518328:1519855:1520063:1531008:1531093,	1519856	1520063	1519991	1519991	Nonsense_Mutation	C	T	p.W78*
HNSC	TCGA-CV-7568-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630511	158630511	Nonsense_Mutation	G	A	p.Q39*
HNSC	TCGA-CV-7568-01	TMEM156	ENST00000344606.6	chr4	38995357:38995618:39000343:39000529:39033845:39034027,	39000344	39000529	39000474	39000474	Nonsense_Mutation	A	C	p.Y48*
HNSC	TCGA-CV-7568-01	COPS3	ENST00000578317.1,ENST00000539941.2,ENST00000268717.5	chr17	17158200:17158259:17163614:17163788:17165279:17165420,	17163615	17163788	17163629	17163629	Nonsense_Mutation	G	A	p.Q288*
HNSC	TCGA-CV-7568-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100279	168100279	Nonsense_Mutation	C	T	p.R793*
HNSC	TCGA-CV-7568-01	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44975379:44975476:44986659:44986784:45000618:45000924,44975379:44975476:44986659:44986784:45000622:45000952,	44986660	44986784	44986676	44986676	Nonsense_Mutation	G	A	p.R139*
HNSC	TCGA-CV-7568-01	LZTS2	ENST00000370223.3,ENST00000370220.1	chr10	102762555:102762703:102763263:102763923:102765214:102765472,	102763264	102763923	102763321	102763321	Nonsense_Mutation	C	T	p.R156*
HNSC	TCGA-CV-7568-01	MTFMT	ENST00000560717.1,ENST00000558460.1,ENST00000220058.4	chr15	65295333:65295594:65297191:65297274:65298450:65298529,	65297192	65297274	65297257	65297257	Nonsense_Mutation	G	A	p.Q304*
HNSC	TCGA-CV-7568-01	NOTCH1	ENST00000277541.6	chr9	139410432:139410546:139411723:139411837:139412203:139412389,	139411724	139411837	139411742	139411742	Nonsense_Mutation	G	A	p.Q513*
HNSC	TCGA-CV-7568-01	AXIN2	ENST00000307078.5	chr17	63532437:63532671:63532986:63533181:63533441:63533953,	63532987	63533181	63533090	63533090	Nonsense_Mutation	C	A	p.G602*
HNSC	TCGA-CV-7568-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603463	111603463	Nonsense_Mutation	G	A	p.W180*
HNSC	TCGA-CV-7568-01	IQCH	ENST00000358767.3,ENST00000512104.1,ENST00000335894.4,ENST00000535744.1,ENST00000560497.1,ENST00000546225.1	chr15	67553639:67553732:67555459:67555554:67571732:67571789,	67555460	67555554	67555493	67555493	Nonsense_Mutation	C	T	p.Q70*
HNSC	TCGA-CV-7568-01	EMC2	ENST00000519450.1,ENST00000220853.3,ENST00000520294.1	chr8	109489010:109489121:109491234:109491339:109498740:109498792,	109491235	109491339	109491300	109491300	Nonsense_Mutation	T	G	p.Y256*
HNSC	TCGA-CV-7568-01	JAK3	ENST00000527031.1,ENST00000534444.1,ENST00000458235.1,ENST00000527670.1	chr19	17949078:17949199:17950285:17950472:17951038:17951150,	17950286	17950472	17950353	17950353	Nonsense_Mutation	C	T	p.W458*
HNSC	TCGA-CV-7568-01	KCNH5	ENST00000322893.7,ENST00000394968.1	chr14	63246445:63246642:63269046:63269299:63316370:63316570,	63269047	63269299	63269170	63269170	Nonsense_Mutation	G	A	p.Q567*
HNSC	TCGA-CV-7568-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113168896	113168896	Nonsense_Mutation	C	T	p.W2995*
HNSC	TCGA-CV-7568-01	PDCL	ENST00000259467.4	chr9	125585294:125585476:125588894:125589071:125590749:125590910,	125588895	125589071	125588973	125588973	Nonsense_Mutation	G	A	p.R32*
HNSC	TCGA-CV-7568-01	SLC43A2	ENST00000572135.1,ENST00000574743.1,ENST00000571650.1,ENST00000382147.4,ENST00000301335.5	chr17	1518272:1518328:1519855:1520063:1531008:1531093,	1519856	1520063	1519990	1519990	Nonsense_Mutation	C	T	p.W78*
HNSC	TCGA-CV-7568-01	FGFR4	ENST00000393648.2	chr5	176519646:176519785:176520138:176520178:176520406:176520502,	176520139	176520178	176520155	176520155	Nonsense_Mutation	G	A	p.W358*
HNSC	TCGA-CV-7568-01	FGFR4	ENST00000292408.4,ENST00000502906.1	chr5	176519646:176519785:176520138:176520332:176520406:176520502,	176520139	176520332	176520155	176520155	Nonsense_Mutation	G	A	p.W358*
HNSC	TCGA-CV-7568-01	WDPCP	ENST00000409562.3,ENST00000272321.7,ENST00000493315.1,ENST00000398544.3,ENST00000409120.1,ENST00000409835.1,ENST00000409199.1,ENST00000417238.1	chr2	63631182:63631792:63660878:63661070:63664554:63664688,	63660879	63661070	63661028	63661028	Nonsense_Mutation	C	A	p.E34*
HNSC	TCGA-CV-7568-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18841247:18841437:18841540:18841691:18844261:18844488,	18841541	18841691	18841660	18841660	Nonsense_Mutation	G	A	p.Q2942*
HNSC	TCGA-CV-7568-01	MCPH1	ENST00000344683.5	chr8	6299587:6299677:6301913:6303068:6312663:6312773,	6301914	6303068	6303035	6303035	Nonsense_Mutation	G	T	p.E598*
HNSC	TCGA-CV-7568-01	RAB26	ENST00000565592.1,ENST00000541451.1,ENST00000561600.1,ENST00000567145.2,ENST00000210187.6,ENST00000562735.1,ENST00000564426.1	chr16	2201576:2201611:2201695:2201762:2201856:2201909,	2201696	2201762	2201701	2201701	Nonsense_Mutation	G	A	p.W118*
HNSC	TCGA-CV-7568-01	TGFBR1	ENST00000374994.4,ENST00000549766.1,ENST00000550253.1,ENST00000552516.1	chr9	101894790:101895021:101900140:101900371:101904817:101904985,	101900141	101900371	101900209	101900209	Nonsense_Mutation	C	T	p.R215*
HNSC	TCGA-CV-7568-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77473953	77473953	Nonsense_Mutation	G	A	p.R106*
HNSC	TCGA-CV-7568-01	FGFR4	ENST00000393648.2	chr5	176519646:176519785:176520138:176520178:176520406:176520502,	176520139	176520178	176520154	176520154	Nonsense_Mutation	G	A	p.W358*
HNSC	TCGA-CV-7568-01	FGFR4	ENST00000292408.4,ENST00000502906.1	chr5	176519646:176519785:176520138:176520332:176520406:176520502,	176520139	176520332	176520154	176520154	Nonsense_Mutation	G	A	p.W358*
HNSC	TCGA-CV-7568-01	SPDEF	ENST00000544425.1	chr6	34508760:34508958:34511796:34512261:34523705:34523843,	34511797	34512261	34512014	34512014	Nonsense_Mutation	C	T	p.W73*
HNSC	TCGA-CV-7568-01	EZH1	ENST00000586089.1,ENST00000585893.1	chr17	40876368:40876442:40879652:40879781:40880842:40880970,40874812:40874933:40879652:40879781:40880842:40880970,	40879653	40879781	40879703	40879703	Nonsense_Mutation	G	A	p.Q66*
HNSC	TCGA-CV-7568-01	EZH1	ENST00000586382.1	chr17	40876368:40876442:40879679:40879781:40880842:40880970,40874812:40874933:40879679:40879781:40880842:40880970,	40879680	40879781	40879703	40879703	Nonsense_Mutation	G	A	p.Q66*
HNSC	TCGA-CV-7568-01	HRAS	ENST00000397596.2,ENST00000451590.1,ENST00000493230.1,ENST00000417302.1,ENST00000397594.1,ENST00000311189.7	chr11	533452:533612:533765:533944:534211:534375,	533766	533944	533830	533830	Nonsense_Mutation	C	A	p.E76*
HNSC	TCGA-CV-A463-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034420	47034420	Nonsense_Mutation	C	T	p.Q169*
HNSC	TCGA-CV-A463-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41000545:41000684:41002543:41002696:41003774:41003879,	41002544	41002696	41002598	41002598	Nonsense_Mutation	C	T	p.Q406*
HNSC	TCGA-CV-A463-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266307	75266307	Nonsense_Mutation	T	G	p.L1436*
HNSC	TCGA-CV-A463-01	FBXO44	ENST00000251547.5,ENST00000376768.1,ENST00000376762.4	chr1	11714966:11715009:11715862:11716157:11718323:11718421,	11715863	11716157	11716049	11716049	Nonsense_Mutation	C	T	p.R53*
HNSC	TCGA-CV-A463-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748855	43748855	Nonsense_Mutation	C	A	p.E646*
HNSC	TCGA-CV-A463-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676523	53676523	Nonsense_Mutation	C	T	p.Q393*
HNSC	TCGA-BA-6869-01	CDH11	ENST00000268603.4,ENST00000566827.1,ENST00000394156.3	chr16	65015950:65016204:65022059:65022247:65025670:65025838,	65022060	65022247	65022110	65022110	Nonsense_Mutation	C	A	p.E317*
HNSC	TCGA-BA-6869-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230650472:230650571:230652220:230652377:230653513:230653656,	230652221	230652377	230652349	230652349	Nonsense_Mutation	G	A	p.Q1548*
HNSC	TCGA-BA-6869-01	DPPA4	ENST00000335658.6	chr3	109046371:109046871:109047736:109047935:109049370:109049659,	109047737	109047935	109047837	109047837	Nonsense_Mutation	T	A	p.K260*
HNSC	TCGA-BA-6869-01	DPPA4	ENST00000463966.1	chr3	109046371:109046871:109047736:109047928:109050580:109050631,	109047737	109047928	109047837	109047837	Nonsense_Mutation	T	A	p.K260*
HNSC	TCGA-BA-6869-01	CYP46A1	ENST00000554611.1,ENST00000380228.2,ENST00000261835.3,ENST00000423126.2	chr14	100166351:100166438:100172983:100173122:100173904:100174015,	100172984	100173122	100172989	100172989	Nonsense_Mutation	T	A	p.L150*
HNSC	TCGA-BA-6869-01	MAP3K13	ENST00000443863.1,ENST00000424227.1,ENST00000433092.1,ENST00000535426.1,ENST00000265026.3	chr3	185155332:185155418:185161232:185161424:185165576:185165735,	185161233	185161424	185161246	185161246	Nonsense_Mutation	C	T	p.Q225*
HNSC	TCGA-BA-6869-01	ZNF430	ENST00000599548.1,ENST00000595833.1,ENST00000594110.1,ENST00000595401.1	chr19	21203522:21203609:21205594:21205687:21216261:21216388,	21205595	21205687	21205625	21205625	Nonsense_Mutation	A	T	p.K12*
HNSC	TCGA-BA-6869-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111200	105111200	Nonsense_Mutation	C	A	p.E445*
HNSC	TCGA-BA-6869-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637520	176637520	Nonsense_Mutation	C	G	p.S707*
HNSC	TCGA-BA-6869-01	IL24	ENST00000391929.3,ENST00000367093.3	chr1	207071177:207071221:207072661:207072860:207073639:207073702,	207072662	207072860	207072725	207072725	Nonsense_Mutation	C	A	p.C36*
HNSC	TCGA-BA-6869-01	IL24	ENST00000294984.2	chr1	207071177:207071221:207072664:207072860:207073639:207073702,	207072665	207072860	207072725	207072725	Nonsense_Mutation	C	A	p.C36*
HNSC	TCGA-BA-6869-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67981003:67981008:67981233:67981338:67981571:67981691,	67981234	67981338	67981323	67981323	Nonsense_Mutation	C	T	p.W663*
HNSC	TCGA-CV-7243-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-7243-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-D6-6823-01	FXR2	ENST00000250113.7	chr17	7497235:7497322:7497555:7497665:7497996:7498075,	7497556	7497665	7497597	7497597	Nonsense_Mutation	G	A	p.R327*
HNSC	TCGA-CR-7374-01	CPSF2	ENST00000298875.4,ENST00000555244.1	chr14	92624002:92624228:92625326:92625626:92627455:92627590,	92625327	92625626	92625450	92625450	Nonsense_Mutation	G	T	p.E649*
HNSC	TCGA-CR-7374-01	ANO10	ENST00000414522.2,ENST00000350459.4,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43591211:43591340:43596769:43596961:43602711:43602894,	43596770	43596961	43596801	43596801	Nonsense_Mutation	G	C	p.S546*
HNSC	TCGA-CR-7374-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211018891	211018891	Nonsense_Mutation	G	C	p.S139*
HNSC	TCGA-CR-7374-01	TBC1D15	ENST00000472611.2	chr12	72274248:72274387:72278590:72278801:72287001:72287086,72266708:72266783:72278590:72278801:72287001:72287086,	72278591	72278801	72278770	72278770	Nonsense_Mutation	G	T	p.E175*
HNSC	TCGA-F7-A623-01	SBF2	ENST00000533770.1,ENST00000256190.8	chr11	10052631:10052717:10064390:10064528:10215448:10215504,	10064391	10064528	10064486	10064486	Nonsense_Mutation	G	A	p.Q62*
HNSC	TCGA-F7-A623-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472681	77472681	Nonsense_Mutation	G	A	p.R530*
HNSC	TCGA-F7-A623-01	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64112192	64112192	Nonsense_Mutation	C	T	p.Q727*
HNSC	TCGA-CV-6948-01	CCDC88C	ENST00000389857.6	chr14	91781993:91782131:91787463:91787648:91791122:91791267,	91787464	91787648	91787565	91787565	Nonsense_Mutation	G	A	p.Q476*
HNSC	TCGA-CV-6948-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741537	37741537	Nonsense_Mutation	C	G	p.S624*
HNSC	TCGA-CV-6948-01	LARP4B	ENST00000448368.1,ENST00000316157.3	chr10	860885:861010:863664:863829:866739:866785,	863665	863829	863817	863817	Nonsense_Mutation	G	A	p.Q515*
HNSC	TCGA-CV-6948-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000375695.2	chrX	51638751:51638856:51639504:51640173:51640303:51640367,	51639505	51640173	51639730	51639730	Nonsense_Mutation	C	T	p.Q383*
HNSC	TCGA-CN-4735-01	REST	ENST00000309042.7	chr4	57777377:57777702:57785952:57786036:57796006:57796125,	57785953	57786036	57785989	57785989	Nonsense_Mutation	C	G	p.S312*
HNSC	TCGA-T2-A6X0-01	OFCC1	ENST00000460066.1,ENST00000316020.6,ENST00000491508.1,ENST00000466385.1,ENST00000460363.2,ENST00000492094.2,ENST00000472329.1	chr6	9933002:9933179:9933474:9933541:9939521:9939552,	9933475	9933541	9933508	9933508	Nonsense_Mutation	G	A	p.Q84*
HNSC	TCGA-CN-6016-01	RAB34	ENST00000415040.2	chr17	27042658:27042723:27042817:27042919:27043920:27044012,	27042818	27042919	27042864	27042864	Nonsense_Mutation	C	A	p.E90*
HNSC	TCGA-BA-4076-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510646	169510646	Nonsense_Mutation	G	A	p.Q1228*
HNSC	TCGA-BA-4076-01	KIAA1217	ENST00000376451.2,ENST00000438429.1,ENST00000396446.1,ENST00000307544.6,ENST00000376452.3,ENST00000376456.4,ENST00000376462.1,ENST00000376454.3,ENST00000458595.1,ENST00000396445.1	chr10	24790307:24790474:24802187:24802363:24809051:24809182,	24802188	24802363	24802317	24802317	Nonsense_Mutation	A	T	p.R711*
HNSC	TCGA-BA-4076-01	SERPING1	ENST00000531797.1	chr11	57373880:57374020:57379189:57379409:57381800:57382002,57369517:57369642:57379189:57379409:57381800:57382002,	57379190	57379409	57379319	57379319	Nonsense_Mutation	G	T	p.E387*
HNSC	TCGA-BA-4076-01	SERPING1	ENST00000340687.6	chr11	57373880:57374020:57379300:57379409:57381800:57382002,	57379301	57379409	57379319	57379319	Nonsense_Mutation	G	T	p.E387*
HNSC	TCGA-BA-4076-01	MAP2K3	ENST00000526076.2,ENST00000395491.2,ENST00000342679.4,ENST00000496046.1,ENST00000316920.6,ENST00000361818.5	chr17	21203856:21203970:21204185:21204305:21205454:21205571,	21204186	21204305	21204272	21204272	Nonsense_Mutation	C	G	p.Y122*
HNSC	TCGA-BA-4076-01	PRIM2	ENST00000389488.2,ENST00000607273.1	chr6	57467079:57467206:57472358:57472441:57498966:57499035,	57472359	57472441	57472415	57472415	Nonsense_Mutation	A	T	p.K402*
HNSC	TCGA-BA-4078-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101833092:101833151:101837121:101837170:101838786:101838883,	101837122	101837170	101837129	101837129	Nonsense_Mutation	A	T	p.K362*
HNSC	TCGA-BA-5152-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000295809.7	chr1	159002313:159002481:159015086:159015254:159021468:159021732,159002319:159002481:159015086:159015254:159019221:159019389,	159015087	159015254	159015213	159015213	Nonsense_Mutation	C	T	p.Q430*
HNSC	TCGA-BA-5152-01	GTF3C2	ENST00000264720.3	chr2	27565857:27566014:27566174:27566445:27579605:27579634,	27566175	27566445	27566301	27566301	Nonsense_Mutation	C	A	p.E41*
HNSC	TCGA-BA-5152-01	PTMA	ENST00000466801.1,ENST00000412128.1,ENST00000468027.1,ENST00000409115.3,ENST00000448874.1,ENST00000410064.1,ENST00000409321.1	chr2	232576057:232576129:232576599:232576693:232577152:232577183,	232576600	232576693	232576621	232576621	Nonsense_Mutation	G	T	p.E48*
HNSC	TCGA-BA-5152-01	PTMA	ENST00000341369.7	chr2	232576057:232576129:232576596:232576693:232577152:232577183,	232576597	232576693	232576621	232576621	Nonsense_Mutation	G	T	p.E48*
HNSC	TCGA-BA-5152-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48775959:48776138:48777116:48777324:48790284:48790412,	48777117	48777324	48777319	48777319	Nonsense_Mutation	G	T	p.S1790*
HNSC	TCGA-BA-5152-01	RALGDS	ENST00000372062.3,ENST00000498797.1,ENST00000393160.3,ENST00000372047.3,ENST00000372050.3,ENST00000542690.1,ENST00000393157.3	chr9	135974024:135974149:135975654:135975769:135976906:135976969,	135975655	135975769	135975666	135975666	Nonsense_Mutation	G	C	p.S853*
HNSC	TCGA-BA-5559-01	IL9R	ENST00000540897.1,ENST00000424344.3,ENST00000369423.2	chrX	155231072:155231173:155232546:155232684:155233113:155233225,	155232547	155232684	155232635	155232635	Nonsense_Mutation	C	A	p.C31*
HNSC	TCGA-BA-6868-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474059	103474059	Nonsense_Mutation	G	T	p.S548*
HNSC	TCGA-BA-6869-01	IL24	ENST00000391929.3,ENST00000367093.3	chr1	207071177:207071221:207072661:207072860:207073639:207073702,	207072662	207072860	207072725	207072725	Nonsense_Mutation	C	A	p.C35*
HNSC	TCGA-BA-6869-01	IL24	ENST00000294984.2	chr1	207071177:207071221:207072664:207072860:207073639:207073702,	207072665	207072860	207072725	207072725	Nonsense_Mutation	C	A	p.C35*
HNSC	TCGA-BA-6869-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67981003:67981008:67981233:67981338:67981571:67981691,	67981234	67981338	67981323	67981323	Nonsense_Mutation	C	T	p.W661*
HNSC	TCGA-BA-6872-01	PRIM2	ENST00000389488.2,ENST00000607273.1	chr6	57467079:57467206:57472358:57472441:57498966:57499035,	57472359	57472441	57472427	57472427	Nonsense_Mutation	G	T	p.G406*
HNSC	TCGA-BA-6873-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131411	202131411	Nonsense_Mutation	C	T	p.R68*
HNSC	TCGA-BA-6873-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131411	202131411	Nonsense_Mutation	C	T	p.R68*
HNSC	TCGA-BA-6873-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539564	187539564	Nonsense_Mutation	G	A	p.R2726*
HNSC	TCGA-BB-4223-01	GMEB1	ENST00000373816.1,ENST00000480454.1,ENST00000294409.2,ENST00000361872.4	chr1	29023438:29023596:29028949:29029081:29030703:29030841,	29028950	29029081	29029013	29029013	Nonsense_Mutation	C	G	p.S231*
HNSC	TCGA-BB-4223-01	COL4A4	ENST00000329662.7,ENST00000396625.3	chr2	227968687:227968768:227973296:227973338:227973548:227973584,	227973297	227973338	227973311	227973311	Nonsense_Mutation	G	A	p.Q241*
HNSC	TCGA-CN-4723-01	CCT7	ENST00000258091.5,ENST00000399032.2,ENST00000539919.1,ENST00000469844.1,ENST00000461290.1	chr2	73467564:73467671:73470131:73470257:73471124:73471157,	73470132	73470257	73470151	73470151	Nonsense_Mutation	C	G	p.S96*
HNSC	TCGA-CN-4727-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54656146:54656250:54669114:54669216:54708206:54708321,54656186:54656250:54669114:54669216:54682177:54682248,	54669115	54669216	54669197	54669197	Nonsense_Mutation	C	A	p.E399*
HNSC	TCGA-CN-4728-01	TIMELESS	ENST00000553532.1,ENST00000229201.4,ENST00000554616.1	chr12	56814746:56814918:56815134:56815277:56815510:56815593,	56815135	56815277	56815188	56815188	Nonsense_Mutation	C	A	p.E939*
HNSC	TCGA-CN-4729-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591278	67591279	Nonsense_Mutation	GA	CT	p.592_593KK>N*
HNSC	TCGA-CN-4731-01	DBI	ENST00000355857.3,ENST00000535757.1,ENST00000393103.2,ENST00000409094.1,ENST00000535617.1,ENST00000460901.1,ENST00000542275.1,ENST00000311521.4	chr2	120125763:120125881:120128315:120128378:120129820:120129983,	120128316	120128378	120128364	120128364	Nonsense_Mutation	G	A	p.W59*
HNSC	TCGA-CN-4739-01	ST3GAL3	ENST00000361400.4,ENST00000335430.6,ENST00000351035.3	chr1	44173313:44173364:44201903:44202051:44257772:44257820,44173313:44173364:44201903:44202051:44280562:44280605,	44201904	44202051	44201936	44201937	Nonsense_Mutation	GG	TT	p.1_2MG>I*
HNSC	TCGA-CN-4739-01	ST3GAL3	ENST00000545417.1,ENST00000347631.2,ENST00000262915.3,ENST00000461066.2	chr1	44173313:44173364:44201903:44202096:44257772:44257820,	44201904	44202096	44201936	44201937	Nonsense_Mutation	GG	TT	p.1_2MG>I*
HNSC	TCGA-CN-4740-01	ECE1	ENST00000264205.6,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21554423:21554534:21560050:21560154:21562342:21562420,	21560051	21560154	21560052	21560052	Nonsense_Mutation	G	A	p.Q557*
HNSC	TCGA-CN-4741-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195517519	195517519	Nonsense_Mutation	G	C	p.S311*
HNSC	TCGA-CN-4741-01	C6	ENST00000337836.5,ENST00000263413.3	chr5	41195893:41196035:41199869:41200014:41201659:41201816,	41199870	41200014	41199909	41199909	Nonsense_Mutation	C	A	p.E136*
HNSC	TCGA-CN-5356-01	ATP12A	ENST00000381946.3	chr13	25264741:25264859:25265119:25265388:25266566:25266765,	25265120	25265388	25265203	25265203	Nonsense_Mutation	G	T	p.E295*
HNSC	TCGA-CN-5356-01	ATP12A	ENST00000218548.6	chr13	25264741:25264859:25265101:25265388:25266566:25266765,	25265102	25265388	25265203	25265203	Nonsense_Mutation	G	T	p.E295*
HNSC	TCGA-CN-5358-01	ACTN4	ENST00000588618.1,ENST00000252699.2	chr19	39200034:39200116:39200896:39200982:39205108:39205201,	39200897	39200982	39200969	39200969	Nonsense_Mutation	C	G	p.S269*
HNSC	TCGA-CN-5366-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156862	106156862	Nonsense_Mutation	C	A	p.S588*
HNSC	TCGA-CN-5369-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000550785.1	chr12	113711373:113711473:113714723:113714840:113715044:113715169,	113714724	113714840	113714796	113714796	Nonsense_Mutation	C	T	p.R339*
HNSC	TCGA-CN-6010-01	MON2	ENST00000393629.2,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000393632.2	chr12	62936876:62936978:62938677:62938788:62940676:62940852,	62938678	62938788	62938684	62938684	Nonsense_Mutation	C	T	p.Q825*
HNSC	TCGA-CN-6011-01	SETD3	ENST00000357563.4,ENST00000329331.3,ENST00000453764.1,ENST00000446066.1,ENST00000436070.2	chr14	99929822:99929915:99932039:99932150:99947064:99947125,	99932040	99932150	99932040	99932040	Nonsense_Mutation	T	A	p.K35*
HNSC	TCGA-CN-6019-01	ARHGAP5	ENST00000345122.3,ENST00000539826.2	chr14	32563535:32563592:32586345:32586493:32615468:32615546,	32586346	32586493	32586346	32586346	Nonsense_Mutation	C	T	p.Q1240*
HNSC	TCGA-CN-6019-01	VPS52	ENST00000464425.1	chr6	33236275:33236426:33236790:33236995:33237266:33237334,	33236791	33236995	33236966	33236966	Nonsense_Mutation	G	A	p.R125*
HNSC	TCGA-CN-6019-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000463486.1,ENST00000478934.1,ENST00000445902.2	chr6	33236275:33236426:33236790:33236966:33237266:33237334,	33236791	33236966	33236966	33236966	Nonsense_Mutation	G	A	p.R125*
HNSC	TCGA-CN-6020-01	LEPR	ENST00000344610.8,ENST00000406510.3,ENST00000462765.1,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66031228:66031288:66036155:66036485:66038008:66038132,	66036156	66036485	66036308	66036308	Nonsense_Mutation	G	T	p.E65*
HNSC	TCGA-CN-6021-01	FNBP1	ENST00000446176.2,ENST00000420781.1,ENST00000443566.2	chr9	132652663:132652825:132658116:132658275:132662243:132662380,	132658117	132658275	132658199	132658199	Nonsense_Mutation	C	T	p.W588*
HNSC	TCGA-CN-6992-01	CHCHD6	ENST00000508789.1,ENST00000503119.1,ENST00000290913.3	chr3	126571489:126571573:126633522:126633593:126676258:126676394,	126633523	126633593	126633572	126633572	Nonsense_Mutation	C	G	p.S182*
HNSC	TCGA-CQ-5326-01	PBRM1	ENST00000356770.4	chr3	52668617:52668831:52675969:52676061:52677263:52677359,52668617:52668831:52675969:52676061:52678719:52678805,	52675970	52676061	52675991	52675991	Nonsense_Mutation	C	A	p.E356*
HNSC	TCGA-CQ-5334-01	PHGDH	ENST00000369407.3,ENST00000369409.4	chr1	120279736:120279889:120283008:120283141:120284389:120284520,	120283009	120283141	120283058	120283059	Nonsense_Mutation	GG	AA	p.W332*
HNSC	TCGA-CQ-6221-01	DHRS13	ENST00000394901.3,ENST00000378895.4	chr17	27225840:27225910:27228007:27228319:27228510:27228634,	27228008	27228319	27228113	27228113	Nonsense_Mutation	C	A	p.E193*
HNSC	TCGA-CQ-6227-01	GRIK1	ENST00000399909.1,ENST00000399914.1,ENST00000389125.3,ENST00000327783.4,ENST00000399907.1,ENST00000389124.2,ENST00000309434.7,ENST00000399913.1,ENST00000535441.1	chr21	30927372:30927623:30933944:30934170:30949283:30949501,	30933945	30934170	30934006	30934006	Nonsense_Mutation	G	T	p.C765*
HNSC	TCGA-CR-5248-01	HGSNAT	ENST00000458501.2,ENST00000379644.4,ENST00000519705.1,ENST00000521576.1,ENST00000297798.7	chr8	43052814:43052885:43052982:43053095:43054530:43055001,	43052983	43053095	43053070	43053070	Nonsense_Mutation	G	A	p.W567*
HNSC	TCGA-CR-6472-01	SERPINA10	ENST00000261994.4	chr14	94754622:94754896:94756212:94756980:94759525:94759608,	94756213	94756980	94756786	94756786	Nonsense_Mutation	C	A	p.E49*
HNSC	TCGA-CR-6478-01	DENND2D	ENST00000357640.4,ENST00000369752.5	chr1	111730752:111730992:111731323:111731408:111731833:111731875,	111731324	111731408	111731345	111731345	Nonsense_Mutation	G	A	p.Q360*
HNSC	TCGA-CR-6481-01	ABLIM1	ENST00000533213.2,ENST00000369252.4,ENST00000369256.2,ENST00000392955.3,ENST00000277895.5	chr10	116211403:116211430:116213137:116213242:116225456:116225586,	116213138	116213242	116213165	116213165	Nonsense_Mutation	G	A	p.Q507*
HNSC	TCGA-CR-6481-01	TRPM1	ENST00000557948.1,ENST00000558768.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31321573:31321594:31323185:31323360:31324891:31325020,	31323186	31323360	31323259	31323259	Nonsense_Mutation	C	T	p.W996*
HNSC	TCGA-CR-6481-01	NONO	ENST00000276079.8,ENST00000535149.1,ENST00000373856.3,ENST00000373841.1,ENST00000471419.2	chrX	70511766:70511822:70514076:70514378:70516414:70516510,	70514077	70514378	70514197	70514197	Nonsense_Mutation	C	T	p.Q157*
HNSC	TCGA-CR-6492-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659189	86659189	Nonsense_Mutation	T	A	p.L493*
HNSC	TCGA-CR-7364-01	PLCXD1	ENST00000381663.3,ENST00000399012.1,ENST00000381657.2	chrX	208165:208321:209701:209885:215763:216132,	209702	209885	209702	209702	Nonsense_Mutation	G	T	p.E184*
HNSC	TCGA-CR-7365-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631735	116631735	Nonsense_Mutation	G	C	p.S184*
HNSC	TCGA-CR-7368-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122773035:122773088:122794308:122794429:122801295:122801402,	122794309	122794429	122794385	122794385	Nonsense_Mutation	G	T	p.S1173*
HNSC	TCGA-CR-7370-01	LAIR2	ENST00000351841.2	chr19	55014915:55014951:55019105:55019399:55021735:55021897,	55019106	55019399	55019221	55019222	Nonsense_Mutation	GG	TT	p.62_63RE>S*
HNSC	TCGA-CR-7370-01	LYN	ENST00000520220.2,ENST00000519728.1	chr8	56866390:56866543:56879273:56879456:56882275:56882352,	56879274	56879456	56879420	56879420	Nonsense_Mutation	G	T	p.E313*
HNSC	TCGA-CR-7371-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511663	169511664	Nonsense_Mutation	TA	AT	p.888_889HK>Q*
HNSC	TCGA-CR-7371-01	ABCD4	ENST00000496015.1,ENST00000481935.1,ENST00000553486.1,ENST00000356924.4,ENST00000556119.1	chr14	74759861:74759951:74761850:74761901:74762556:74762617,	74761851	74761901	74761852	74761852	Nonsense_Mutation	T	A	p.R240*
HNSC	TCGA-CR-7371-01	ATP1B3	ENST00000462082.1	chr3	141595696:141595752:141622461:141622590:141626008:141626116,141595696:141595752:141622461:141622590:141644372:141644485,	141622462	141622590	141622516	141622516	Nonsense_Mutation	C	G	p.S55*
HNSC	TCGA-CR-7371-01	AIF1L	ENST00000372314.3,ENST00000372309.3,ENST00000372312.3,ENST00000372301.2,ENST00000247291.3	chr9	133989963:133990005:133993142:133993305:133995621:133995730,	133993143	133993305	133993218	133993218	Nonsense_Mutation	C	G	p.S93*
HNSC	TCGA-CR-7371-01	AIF1L	ENST00000372297.2,ENST00000372300.1	chr9	133989963:133990005:133993142:133993234:133995621:133995730,	133993143	133993234	133993218	133993218	Nonsense_Mutation	C	G	p.S93*
HNSC	TCGA-CR-7374-01	TBC1D15	ENST00000472611.2	chr12	72274248:72274387:72278590:72278801:72287001:72287086,72266708:72266783:72278590:72278801:72287001:72287086,	72278591	72278801	72278770	72278770	Nonsense_Mutation	G	T	p.E197*
HNSC	TCGA-CR-7374-01	ACSM5	ENST00000570305.1,ENST00000331849.4	chr16	20435237:20435391:20439109:20439189:20440999:20441123,	20439110	20439189	20439173	20439173	Nonsense_Mutation	C	T	p.Q329*
HNSC	TCGA-CR-7374-01	SMC4	ENST00000472991.1	chr3	160117437:160117485:160120463:160120655:160122165:160122292,160119777:160119881:160120463:160120655:160122115:160122124,160117456:160117537:160120463:160120655:160122115:160122124,	160120464	160120655	160120573	160120573	Nonsense_Mutation	C	A	p.S143*
HNSC	TCGA-CR-7388-01	CAPN2	ENST00000433674.2,ENST00000295006.5,ENST00000434648.1	chr1	223931801:223931920:223933007:223933141:223934698:223934765,	223933008	223933141	223933090	223933090	Nonsense_Mutation	C	G	p.S170*
HNSC	TCGA-CR-7388-01	C12orf42	ENST00000378113.2,ENST00000548048.1,ENST00000548883.1	chr12	103695732:103696337:103699751:103700123:103762664:103762776,	103699752	103700123	103699898	103699898	Nonsense_Mutation	C	T	p.W162*
HNSC	TCGA-CR-7390-01	RSPH10B2	ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6819240:6819355:6820439:6820519:6820958:6821107,	6820440	6820519	6820509	6820509	Nonsense_Mutation	C	A	p.C533*
HNSC	TCGA-CR-7394-01	PLXNA4	ENST00000359827.3,ENST00000321063.4	chr7	131912209:131912363:131913104:131913228:131925824:131925925,	131913105	131913228	131913119	131913119	Nonsense_Mutation	G	A	p.Q572*
HNSC	TCGA-CR-7399-01	AZGP1	ENST00000292401.4	chr7	99564890:99564909:99565777:99566053:99569368:99569629,	99565778	99566053	99565930	99565930	Nonsense_Mutation	C	T	p.W154*
HNSC	TCGA-CR-7401-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17124208:17124378:17126715:17126852:17131978:17132108,	17126716	17126852	17126756	17126756	Nonsense_Mutation	C	T	p.W1214*
HNSC	TCGA-CR-7402-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729807	78729807	Nonsense_Mutation	G	C	p.S762*
HNSC	TCGA-CV-5432-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883214	4883214	Nonsense_Mutation	G	T	p.S468*
HNSC	TCGA-CV-5432-01	AKIRIN2	ENST00000257787.5	chr6	88385577:88385649:88387535:88387685:88391337:88391481,	88387536	88387685	88387536	88387536	Nonsense_Mutation	C	A	p.E177*
HNSC	TCGA-CV-5435-01	WDR11	ENST00000605178.1,ENST00000605202.1	chr10	122610915:122611039:122612035:122612147:122618154:122618308,	122612036	122612147	122612036	122612036	Nonsense_Mutation	G	A	p.W29*
HNSC	TCGA-CV-5435-01	TXK	ENST00000264316.4,ENST00000510457.1	chr4	48091766:48091841:48096093:48096221:48097159:48097239,	48096094	48096221	48096214	48096215	Nonsense_Mutation	CC	AA	p.E197*
HNSC	TCGA-CV-5440-01	CSPP1	ENST00000521324.1,ENST00000521168.1,ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68089914:68089961:68092097:68092161:68102884:68102994,	68092098	68092161	68092140	68092140	Nonsense_Mutation	G	T	p.E1097*
HNSC	TCGA-CV-5441-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509367	106509368	Nonsense_Mutation	CC	AA	p.S454*
HNSC	TCGA-CV-5966-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131498	202131498	Nonsense_Mutation	C	T	p.Q97*
HNSC	TCGA-CV-5966-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131498	202131498	Nonsense_Mutation	C	T	p.Q97*
HNSC	TCGA-CV-5978-01	TRPC3	ENST00000379645.3,ENST00000264811.5,ENST00000506449.1	chr4	122833031:122833248:122835934:122836099:122846172:122846361,	122835935	122836099	122836027	122836027	Nonsense_Mutation	G	A	p.Q417*
HNSC	TCGA-CV-6935-01	BBS9	ENST00000350941.3	chr7	33388679:33388782:33397466:33397607:33407378:33407474,	33397467	33397607	33397536	33397536	Nonsense_Mutation	C	A	p.S541*
HNSC	TCGA-CV-6936-01	SENP6	ENST00000370010.2,ENST00000327284.8	chr6	76343419:76343442:76344422:76344527:76357446:76357517,	76344423	76344527	76344432	76344433	Nonsense_Mutation	GC	TT	p.Q122*
HNSC	TCGA-CV-6941-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060238	56060238	Nonsense_Mutation	G	A	p.R184*
HNSC	TCGA-CV-6942-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300910	21300910	Nonsense_Mutation	C	G	p.Y481*
HNSC	TCGA-CV-6945-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100934449:100934596:100955662:100955776:100957028:100957267,	100955663	100955776	100955674	100955674	Nonsense_Mutation	G	T	p.E374*
HNSC	TCGA-CV-6945-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-6945-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
HNSC	TCGA-CV-6948-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000375695.2	chrX	51638751:51638856:51639504:51640173:51640303:51640367,	51639505	51640173	51639730	51639730	Nonsense_Mutation	C	T	p.Q327*
HNSC	TCGA-CV-6951-01	PTCH1	ENST00000331920.6,ENST00000375290.2,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375274.2	chr9	98239040:98239139:98239828:98239984:98240336:98240468,	98239829	98239984	98239882	98239882	Nonsense_Mutation	C	A	p.G484*
HNSC	TCGA-CV-6952-01	NDUFA5	ENST00000471770.1,ENST00000378795.4,ENST00000355749.2,ENST00000467117.1	chr7	123182054:123182274:123185664:123185730:123190523:123190640,	123185665	123185730	123185711	123185711	Nonsense_Mutation	A	C	p.L68*
HNSC	TCGA-CV-6954-01	SLAIN2	ENST00000506375.1,ENST00000264313.6	chr4	48371865:48372014:48379912:48380077:48381706:48381741,	48379913	48380077	48380075	48380075	Nonsense_Mutation	C	G	p.S234*
HNSC	TCGA-CV-6959-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659245	86659245	Nonsense_Mutation	C	T	p.R512*
HNSC	TCGA-CV-6960-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577142	7577143	Nonsense_Mutation	CC	AA	p.G266*
HNSC	TCGA-CV-7101-01	YTHDF3	ENST00000524135.1,ENST00000521674.1,ENST00000520640.1,ENST00000517303.1,ENST00000542911.2	chr8	64087895:64087975:64098705:64100303:64122240:64122663,	64098706	64100303	64099527	64099527	Nonsense_Mutation	C	T	p.Q320*
HNSC	TCGA-CV-7104-01	AK5	ENST00000344720.5,ENST00000530826.1,ENST00000354567.2	chr1	77951992:77952037:77984248:77984412:77987511:77987628,	77984249	77984412	77984359	77984359	Nonsense_Mutation	G	T	p.E420*
HNSC	TCGA-CV-7178-01	EPS8L3	ENST00000361965.4,ENST00000369805.3	chr1	110294380:110294404:110294616:110294815:110295307:110295342,	110294617	110294815	110294748	110294748	Nonsense_Mutation	G	A	p.Q435*
HNSC	TCGA-CV-7242-01	RASAL1	ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000551051.1	chr12	113539693:113539814:113541750:113541886:113541965:113542019,	113541751	113541886	113541858	113541858	Nonsense_Mutation	G	T	p.S665*
HNSC	TCGA-CV-7242-01	ABLIM2	ENST00000545242.1,ENST00000361581.5,ENST00000296372.8,ENST00000447017.2,ENST00000505872.1,ENST00000407564.3,ENST00000341937.5	chr4	8031382:8031503:8037875:8038022:8046890:8046968,	8037876	8038022	8037890	8037890	Nonsense_Mutation	G	A	p.Q345*
HNSC	TCGA-CV-7248-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670762	13670762	Nonsense_Mutation	C	T	p.Q891*
HNSC	TCGA-CV-7250-01	TEK	ENST00000406359.4,ENST00000519097.1,ENST00000380036.4	chr9	27217685:27217756:27218774:27218815:27220046:27220143,	27218775	27218815	27218815	27218815	Nonsense_Mutation	G	T	p.G1035*
HNSC	TCGA-CV-7254-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408088	130408088	Nonsense_Mutation	C	A	p.E1282*
HNSC	TCGA-CV-7261-01	FAH	ENST00000539156.1,ENST00000261755.5,ENST00000407106.1,ENST00000561421.1	chr15	80465355:80465486:80467357:80467433:80469878:80469925,	80467358	80467433	80467433	80467433	Nonsense_Mutation	G	T	p.G305*
HNSC	TCGA-CV-7261-01	IFT122	ENST00000515783.1	chr3	129170756:129170841:129182402:129182469:129188184:129188260,	129182403	129182469	129182445	129182445	Nonsense_Mutation	C	G	p.S131*
HNSC	TCGA-CV-7407-01	CUX1	ENST00000292538.4,ENST00000497815.1,ENST00000360264.3,ENST00000425244.2	chr7	101460919:101460949:101559394:101559505:101671377:101671425,101459300:101459373:101559394:101559505:101671377:101671425,	101559395	101559505	101559503	101559503	Nonsense_Mutation	G	T	p.E47*
HNSC	TCGA-CV-7414-01	CDH23	ENST00000398809.4,ENST00000299366.7,ENST00000461841.3,ENST00000398842.3	chr10	73270876:73270969:73326498:73326693:73330546:73330675,	73326499	73326693	73326583	73326583	Nonsense_Mutation	C	T	p.Q172*
HNSC	TCGA-CV-7414-01	FAM133B	ENST00000438306.1,ENST00000427372.1,ENST00000445716.1	chr7	92191595:92191682:92195327:92195375:92199136:92199229,	92195328	92195375	92195342	92195342	Nonsense_Mutation	G	A	p.R215*
HNSC	TCGA-CV-7414-01	FAM133B	ENST00000415397.2	chr7	92191595:92191682:92195323:92195375:92199136:92199229,	92195324	92195375	92195342	92195342	Nonsense_Mutation	G	A	p.R215*
HNSC	TCGA-CV-7423-01	CMTM5	ENST00000339180.4	chr14	23847671:23847710:23847877:23848078:23848239:23848332,	23847878	23848078	23847950	23847950	Nonsense_Mutation	C	T	p.Q118*
HNSC	TCGA-CV-7427-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256444	9256444	Nonsense_Mutation	C	G	p.S1060*
HNSC	TCGA-CV-7429-01	RUNX3	ENST00000308873.6,ENST00000399916.1,ENST00000496967.1,ENST00000338888.3,ENST00000540420.1	chr1	25233749:25233908:25245730:25245835:25254064:25254221,	25245731	25245835	25245773	25245773	Nonsense_Mutation	G	A	p.R168*
HNSC	TCGA-CV-7437-01	PLEKHO1	ENST00000369126.1,ENST00000479194.1,ENST00000025469.6,ENST00000369124.4	chr1	150123101:150123248:150128259:150128400:150129104:150129209,	150128260	150128400	150128284	150128284	Nonsense_Mutation	G	T	p.E68*
HNSC	TCGA-CV-7438-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000502304.1,ENST00000506507.1,ENST00000509195.1,ENST00000347300.2,ENST00000512157.1,ENST00000348417.2	chr3	129170756:129170841:129180070:129180147:129182402:129182465,129177441:129177520:129180070:129180147:129182402:129182465,	129180071	129180147	129180117	129180117	Nonsense_Mutation	C	T	p.Q107*
HNSC	TCGA-CV-7438-01	TPD52	ENST00000518517.1,ENST00000524194.1,ENST00000379097.3,ENST00000379096.5,ENST00000523319.2,ENST00000521354.1,ENST00000523193.1	chr8	80950451:80950470:80954854:80954903:80963761:80963863,	80954855	80954903	80954859	80954859	Nonsense_Mutation	A	T	p.L184*
HNSC	TCGA-CX-7082-01	SLC2A6	ENST00000371899.4	chr9	136338226:136338372:136338536:136338722:136339101:136339210,	136338537	136338722	136338606	136338607	Nonsense_Mutation	GC	AT	p.Q385*
HNSC	TCGA-CX-7219-01	PHF11	ENST00000378319.3,ENST00000426879.1,ENST00000488958.1,ENST00000357596.3	chr13	50098220:50098352:50100522:50100594:50102646:50102672,	50100523	50100594	50100528	50100528	Nonsense_Mutation	G	T	p.E259*
HNSC	TCGA-D6-6516-01	CLK2	ENST00000368361.4,ENST00000355560.4,ENST00000497188.1,ENST00000361168.5,ENST00000476983.1,ENST00000536801.1	chr1	155235650:155235745:155236519:155236686:155237800:155237917,	155236520	155236686	155236562	155236563	Nonsense_Mutation	GG	AA	p.Q266*
HNSC	TCGA-D6-6516-01	BAZ2A	ENST00000547650.1	chr12	57000416:57000517:57003519:57003721:57003897:57003999,	57003520	57003721	57003658	57003658	Nonsense_Mutation	G	A	p.R654*
HNSC	TCGA-D6-6516-01	BAZ2A	ENST00000551812.1,ENST00000549884.1,ENST00000379441.3,ENST00000179765.5	chr12	57000416:57000517:57003519:57003730:57003897:57003999,	57003520	57003730	57003658	57003658	Nonsense_Mutation	G	A	p.R654*
HNSC	TCGA-D6-6516-01	NCOR2	ENST00000461081.1	chr12	124817675:124817825:124818969:124819826:124820028:124820178,	124818970	124819826	124819764	124819764	Nonsense_Mutation	G	A	p.Q2120*
HNSC	TCGA-D6-6516-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1	chr12	124818969:124819163:124819680:124819826:124820028:124820178,	124819681	124819826	124819764	124819764	Nonsense_Mutation	G	A	p.Q2120*
HNSC	TCGA-D6-6516-01	WWOX	ENST00000408984.3,ENST00000566780.1,ENST00000562639.1,ENST00000569332.1	chr16	78420756:78420845:78458766:78458952:78466384:78466500,	78458767	78458952	78458951	78458951	Nonsense_Mutation	C	T	p.R264*
HNSC	TCGA-D6-6825-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551294	165551294	Nonsense_Mutation	G	A	p.Q975*
HNSC	TCGA-D6-6825-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551294	165551294	Nonsense_Mutation	G	A	p.Q975*
HNSC	TCGA-DQ-5629-01	SLC17A3	ENST00000397060.4,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25850686:25850848:25850986:25851105:25855371:25855458,	25850987	25851105	25851036	25851036	Nonsense_Mutation	C	T	p.W183*
HNSC	TCGA-DQ-7588-01	PLEKHA5	ENST00000355397.3,ENST00000539256.1,ENST00000299275.6,ENST00000538714.1	chr12	19498775:19498822:19501332:19501453:19506817:19506936,	19501333	19501453	19501415	19501415	Nonsense_Mutation	C	A	p.S828*
HNSC	TCGA-F7-7848-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000307138.6	chr14	36125012:36125121:36128343:36128402:36133847:36133973,	36128344	36128402	36128345	36128345	Nonsense_Mutation	G	A	p.R1290*
HNSC	TCGA-HD-7753-01	TOM1	ENST00000382034.5,ENST00000404284.2	chr22	35723263:35723380:35726339:35726473:35728973:35729007,35723263:35723380:35726339:35726473:35727288:35727488,	35726340	35726473	35726367	35726367	Nonsense_Mutation	C	T	p.Q265*
KICH	TCGA-KO-8417-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265325	75265325	Nonsense_Mutation	C	T	p.R1109X
KICH	TCGA-KN-8428-01	ALPL	ENST00000425315.2,ENST00000374832.1,ENST00000374840.3	chr1	21880574:21880635:21887118:21887238:21887589:21887705,	21887119	21887238	21887145	21887145	Nonsense_Mutation	C	T	p.R30X
KICH	TCGA-KN-8428-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262X
KICH	TCGA-KN-8428-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262X
KICH	TCGA-KN-8428-01	TMEM161B	ENST00000506536.1	chr5	87492192:87492305:87494792:87494967:87498778:87498892,	87494793	87494967	87494939	87494939	Nonsense_Mutation	G	A	p.R315X
KICH	TCGA-KN-8428-01	TRIM68	ENST00000532108.1,ENST00000300747.5	chr11	4623473:4623642:4624474:4624570:4629256:4629368,4623473:4623642:4624474:4624570:4626308:4626791,	4624475	4624570	4624492	4624492	Nonsense_Mutation	G	A	p.R169X
KICH	TCGA-KN-8428-01	GALNT6	ENST00000543196.2,ENST00000603641.1,ENST00000603680.1,ENST00000356317.3	chr12	51751132:51751234:51751913:51752045:51752915:51753067,	51751914	51752045	51752021	51752021	Nonsense_Mutation	G	A	p.R465X
KICH	TCGA-KN-8428-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
KICH	TCGA-KO-8416-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
KICH	TCGA-KN-8432-01	FERMT3	ENST00000279227.5,ENST00000345728.5	chr11	63987691:63987798:63987907:63988141:63988487:63988612,	63987908	63988141	63988121	63988121	Nonsense_Mutation	C	T	p.R513X
KICH	TCGA-KN-8432-01	SUPT6H	ENST00000347486.4,ENST00000314616.6	chr17	27027363:27027530:27027958:27028146:27028456:27028557,	27027959	27028146	27028052	27028052	Nonsense_Mutation	C	T	p.Q1634X
KICH	TCGA-KL-8341-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577064	7577064	Nonsense_Mutation	T	A	p.K292X
KICH	TCGA-KL-8341-01	LDLR	ENST00000558013.1,ENST00000545707.1,ENST00000557933.1,ENST00000557958.1,ENST00000455727.2	chr19	11200153:11200291:11210898:11211021:11213339:11213462,	11210899	11211021	11210912	11210912	Nonsense_Mutation	C	A	p.C27X
KICH	TCGA-KL-8335-01	AKR1C4	ENST00000380448.1,ENST00000263126.1	chr10	5248237:5248360:5254578:5254688:5254956:5255122,	5254579	5254688	5254675	5254675	Nonsense_Mutation	C	T	p.R223X
KICH	TCGA-KO-8408-01	FRAS1	ENST00000264895.6,ENST00000325942.6	chr4	79296892:79297033:79300879:79301150:79305212:79305297,	79300880	79301150	79301068	79301068	Nonsense_Mutation	C	T	p.Q1161X
KICH	TCGA-KL-8330-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275928	114275928	Nonsense_Mutation	C	T	p.R2052X
KICH	TCGA-KO-8407-01	CKAP2	ENST00000378037.5,ENST00000480747.1	chr13	53030657:53030742:53035030:53035109:53035192:53035393,	53035031	53035109	53035065	53035065	Nonsense_Mutation	C	T	p.Q64X
KICH	TCGA-KO-8407-01	CKAP2	ENST00000378034.3,ENST00000490903.1,ENST00000258607.5	chr13	53030657:53030742:53035033:53035109:53035192:53035393,	53035034	53035109	53035065	53035065	Nonsense_Mutation	C	T	p.Q64X
KICH	TCGA-KO-8413-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
KICH	TCGA-KN-8433-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144890886	144890886	Nonsense_Mutation	G	A	p.Q670X
KICH	TCGA-KN-8425-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624289	117624289	Nonsense_Mutation	C	A	p.E155X
KICH	TCGA-KL-8327-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745123	17745123	Nonsense_Mutation	C	A	p.S966*
KICH	TCGA-KL-8328-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100984	168100984	Nonsense_Mutation	C	T	p.Q1028*
KICH	TCGA-KL-8335-01	AKR1C4	ENST00000380448.1,ENST00000263126.1	chr10	5248237:5248360:5254578:5254688:5254956:5255122,	5254579	5254688	5254675	5254675	Nonsense_Mutation	C	T	p.R223*
KICH	TCGA-KL-8339-01	ANKRD2	ENST00000307518.5,ENST00000370655.1	chr10	99341072:99341171:99342071:99342170:99342360:99342459,	99342072	99342170	99342111	99342111	Nonsense_Mutation	C	T	p.Q259*
KICH	TCGA-KL-8341-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577064	7577064	Nonsense_Mutation	T	A	p.K292*
KICH	TCGA-KL-8346-01	TBC1D5	ENST00000429383.4,ENST00000446818.2,ENST00000253692.7,ENST00000429924.2	chr3	17413566:17413739:17415962:17416032:17416120:17416171,	17415963	17416032	17415993	17415993	Nonsense_Mutation	C	T	p.W264*
KICH	TCGA-KN-8425-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624289	117624289	Nonsense_Mutation	C	A	p.E155*
KICH	TCGA-KN-8428-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262*
KICH	TCGA-KN-8428-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262*
KICH	TCGA-KN-8428-01	TRIM68	ENST00000532108.1,ENST00000300747.5	chr11	4623473:4623642:4624474:4624570:4629256:4629368,4623473:4623642:4624474:4624570:4626308:4626791,	4624475	4624570	4624492	4624492	Nonsense_Mutation	G	A	p.R169*
KICH	TCGA-KN-8428-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
KICH	TCGA-KN-8428-01	GALNT6	ENST00000543196.2,ENST00000603641.1,ENST00000603680.1,ENST00000356317.3	chr12	51751132:51751234:51751913:51752045:51752915:51753067,	51751914	51752045	51752021	51752021	Nonsense_Mutation	G	A	p.R465*
KICH	TCGA-KN-8428-01	TMEM161B	ENST00000506536.1	chr5	87492192:87492305:87494792:87494967:87498778:87498892,	87494793	87494967	87494939	87494939	Nonsense_Mutation	G	A	p.R315*
KICH	TCGA-KN-8428-01	TTC5	ENST00000554157.1,ENST00000258821.3,ENST00000423949.2,ENST00000383029.3	chr14	20763470:20763685:20763866:20764013:20764548:20764605,	20763867	20764013	20763923	20763923	Nonsense_Mutation	G	A	p.R263*
KICH	TCGA-KN-8428-01	ALPL	ENST00000425315.2,ENST00000374832.1,ENST00000374840.3	chr1	21880574:21880635:21887118:21887238:21887589:21887705,	21887119	21887238	21887145	21887145	Nonsense_Mutation	C	T	p.R30*
KICH	TCGA-KN-8431-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
KICH	TCGA-KN-8432-01	FERMT3	ENST00000279227.5,ENST00000345728.5	chr11	63987691:63987798:63987907:63988141:63988487:63988612,	63987908	63988141	63988121	63988121	Nonsense_Mutation	C	T	p.R513*
KICH	TCGA-KN-8433-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144890886	144890886	Nonsense_Mutation	G	A	p.Q670*
KICH	TCGA-KN-8436-01	ENO1	ENST00000234590.4,ENST00000464920.1	chr1	8921063:8921488:8922945:8923004:8923293:8923402,	8922946	8923004	8922983	8922983	Nonsense_Mutation	G	A	p.R400*
KICH	TCGA-KO-8408-01	FRAS1	ENST00000264895.6,ENST00000325942.6	chr4	79296892:79297033:79300879:79301150:79305212:79305297,	79300880	79301150	79301068	79301068	Nonsense_Mutation	C	T	p.Q1161*
KICH	TCGA-KO-8408-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99671287	99671287	Nonsense_Mutation	A	T	p.K907*
KICH	TCGA-KO-8413-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
KICH	TCGA-KO-8416-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
KICH	TCGA-KO-8417-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265325	75265325	Nonsense_Mutation	C	T	p.R1109*
KIRC	TCGA-AK-3429-01	ARL6IP1	ENST00000546206.2,ENST00000304414.7,ENST00000562234.2	chr16	18805920:18806005:18806785:18806903:18809246:18809366,	18806786	18806903	18806884	18806884	Nonsense_Mutation	T	A	p.R104X
KIRC	TCGA-AK-3429-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17424835:17424912:17425146:17425198:17426742:17426804,	17425147	17425198	17425185	17425185	Nonsense_Mutation	C	A	p.Y41X
KIRC	TCGA-B0-5099-01	P4HA2	ENST00000379104.2,ENST00000166534.4,ENST00000360568.3,ENST00000379086.1,ENST00000401867.1,ENST00000379100.2	chr5	131539774:131539845:131543400:131543577:131544830:131545024,	131543401	131543577	131543565	131543565	Nonsense_Mutation	G	A	p.Q306X
KIRC	TCGA-B0-5107-01	RSPO1	ENST00000373059.1,ENST00000401068.1,ENST00000401069.1,ENST00000356545.2	chr1	38077483:38078593:38079375:38079564:38079855:38080005,	38079376	38079564	38079542	38079542	Nonsense_Mutation	C	T	p.W153X
KIRC	TCGA-B8-A54J-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208842260	208842260	Nonsense_Mutation	T	A	p.R221X
KIRC	TCGA-A3-3382-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662912	52662912	Nonsense_Mutation	G	A	p.Q481X
KIRC	TCGA-CJ-5676-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47125209:47125872:47127684:47127804:47129602:47129737,	47127685	47127804	47127736	47127736	Nonsense_Mutation	C	T	p.W1782X
KIRC	TCGA-CJ-5676-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597493	52597493	Nonsense_Mutation	G	A	p.Q1273X
KIRC	TCGA-CJ-5676-01	PBRM1	ENST00000394830.3	chr3	52595782:52595984:52597379:52597509:52598065:52598249,	52597380	52597509	52597493	52597493	Nonsense_Mutation	G	A	p.Q1273X
KIRC	TCGA-CJ-5676-01	JAK2	ENST00000539801.1,ENST00000381652.3,ENST00000544510.1	chr9	5123003:5123121:5126332:5126446:5126683:5126814,	5126333	5126446	5126444	5126444	Nonsense_Mutation	G	T	p.E1097X
KIRC	TCGA-CJ-4634-01	CORIN	ENST00000273857.4,ENST00000502252.1,ENST00000502726.1,ENST00000508498.1,ENST00000503821.1,ENST00000504584.1,ENST00000505909.1	chr4	47685747:47685855:47694986:47695100:47746418:47746600,	47694987	47695100	47695024	47695024	Nonsense_Mutation	G	T	p.Y292X
KIRC	TCGA-CJ-4634-01	COL13A1	ENST00000398973.3,ENST00000398972.3	chr10	71690208:71690308:71692315:71692360:71695105:71695147,71690208:71690308:71692315:71692360:71696511:71696538,	71692316	71692360	71692319	71692319	Nonsense_Mutation	G	T	p.E552X
KIRC	TCGA-B0-5692-01	PTP4A2	ENST00000602683.1	chr1	32375669:32375713:32377296:32377427:32384570:32384710,32375669:32375713:32377296:32377427:32381495:32381588,32374439:32374561:32377296:32377427:32381495:32381588,	32377297	32377427	32377374	32377374	Nonsense_Mutation	C	T	p.W81X
KIRC	TCGA-BP-4999-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52663035	52663035	Nonsense_Mutation	G	A	p.Q440X
KIRC	TCGA-BP-4999-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33315217:33315286:33316728:33316865:33320114:33320238,	33316729	33316865	33316758	33316758	Nonsense_Mutation	G	A	p.W835X
KIRC	TCGA-BP-4993-01	MCM3AP	ENST00000397708.1,ENST00000291688.1	chr21	47690314:47690477:47692474:47692743:47693301:47693499,	47692475	47692743	47692476	47692476	Nonsense_Mutation	T	A	p.R822X
KIRC	TCGA-B8-5553-01	SLC44A1	ENST00000374723.1,ENST00000470972.1,ENST00000374724.1,ENST00000374720.3,ENST00000343170.7	chr9	108127763:108127920:108128626:108128710:108136878:108137016,	108128627	108128710	108128708	108128708	Nonsense_Mutation	C	T	p.Q498X
KIRC	TCGA-B8-5553-01	FUS	ENST00000487509.2,ENST00000474990.1,ENST00000569760.1,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31201595:31201719:31202062:31202163:31202283:31202423,	31202063	31202163	31202112	31202112	Nonsense_Mutation	A	T	p.K448X
KIRC	TCGA-B8-5553-01	CANT1	ENST00000591773.1,ENST00000302345.2,ENST00000392446.5	chr17	76989865:76990002:76991099:76991303:76993073:76993726,	76991100	76991303	76991241	76991241	Nonsense_Mutation	C	A	p.E232X
KIRC	TCGA-BP-5176-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1	chr9	139358871:139359014:139360413:139360588:139360715:139360836,	139360414	139360588	139360547	139360547	Nonsense_Mutation	G	T	p.Y1390X
KIRC	TCGA-BP-5176-01	GOT1	ENST00000543866.1,ENST00000370508.5	chr10	101163225:101163391:101163480:101163631:101165512:101165617,	101163481	101163631	101163595	101163595	Nonsense_Mutation	G	A	p.Q227X
KIRC	TCGA-B0-5694-01	ATIC	ENST00000443953.1,ENST00000435675.1,ENST00000413174.1,ENST00000540518.1,ENST00000236959.9,ENST00000427397.1	chr2	216182881:216182956:216184387:216184454:216189963:216190052,	216184388	216184454	216184411	216184411	Nonsense_Mutation	G	T	p.E83X
KIRC	TCGA-B0-5694-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52685779:52685826:52692214:52692331:52696148:52696292,	52692215	52692331	52692235	52692235	Nonsense_Mutation	G	A	p.Q209X
KIRC	TCGA-A3-3316-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816426	203816426	Nonsense_Mutation	C	A	p.S386X
KIRC	TCGA-B0-4823-01	DNAH7	ENST00000312428.6	chr2	196750864:196750996:196752981:196753158:196753522:196753705,	196752982	196753158	196753118	196753118	Nonsense_Mutation	A	T	p.L1757X
KIRC	TCGA-B0-4823-01	CREBL2	ENST00000228865.2	chr12	12764825:12765121:12788710:12788908:12790503:12790508,	12788711	12788908	12788786	12788786	Nonsense_Mutation	G	T	p.E31X
KIRC	TCGA-CJ-5677-01	SCML1	ENST00000380041.3	chrX	17755670:17755800:17763575:17763659:17764137:17764218,17762190:17762339:17763575:17763659:17764137:17764218,	17763576	17763659	17763603	17763603	Nonsense_Mutation	G	T	p.E21X
KIRC	TCGA-BP-5007-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000399200.2,ENST00000466493.1,ENST00000602465.1	chr10	70139249:70139278:70140988:70141156:70143554:70143671,	70140989	70141156	70140991	70140991	Nonsense_Mutation	G	A	p.Q404X
KIRC	TCGA-CZ-5457-01	WRAP73	ENST00000419924.2,ENST00000270708.7,ENST00000424367.1	chr1	3563229:3563346:3563971:3564124:3566494:3566590,	3563972	3564124	3564112	3564112	Nonsense_Mutation	G	A	p.Q28X
KIRC	TCGA-B8-4153-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32260229:32260478:32369180:32369393:32446927:32447080,	32369181	32369393	32369298	32369298	Nonsense_Mutation	G	T	p.E111X
KIRC	TCGA-A3-3372-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203421005	203421005	Nonsense_Mutation	C	T	p.R873X
KIRC	TCGA-B0-5399-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47125209:47125872:47127684:47127804:47129602:47129737,	47127685	47127804	47127737	47127737	Nonsense_Mutation	C	T	p.W1782X
KIRC	TCGA-B0-4818-01	GPT2	ENST00000440783.2,ENST00000340124.4	chr16	46943595:46943839:46950539:46950619:46952532:46952669,	46950540	46950619	46950590	46950590	Nonsense_Mutation	G	T	p.E291X
KIRC	TCGA-DV-5568-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711910	89711910	Nonsense_Mutation	T	G	p.Y176X
KIRC	TCGA-G6-A5PC-01	SNX25	ENST00000264694.8,ENST00000504273.1,ENST00000504959.1	chr4	186263129:186263270:186267690:186267804:186274638:186274756,186263129:186263270:186267690:186267804:186272598:186272763,	186267691	186267804	186267757	186267757	Nonsense_Mutation	C	T	p.Q588X
KIRC	TCGA-B0-4706-01	ZFY	ENST00000449237.1	chrY	2821949:2822038:2829114:2829687:2843135:2843285,2803545:2803810:2829114:2829687:2843135:2843285,	2829115	2829687	2829144	2829144	Nonsense_Mutation	C	T	p.Q31X
KIRC	TCGA-B0-5110-01	OAF	ENST00000531220.1	chr11	120082008:120082218:120096453:120096504:120097524:120097705,	120096454	120096504	120096481	120096481	Nonsense_Mutation	G	T	p.E115X
KIRC	TCGA-CW-5585-01	CPB1	ENST00000484877.1,ENST00000282957.4,ENST00000491148.1	chr3	148558664:148558762:148559609:148559711:148562264:148562283,	148559610	148559711	148559631	148559631	Nonsense_Mutation	A	T	p.K166X
KIRC	TCGA-CJ-6033-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188290	10188290	Nonsense_Mutation	C	T	p.Q145X
KIRC	TCGA-BP-4163-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439876	52439876	Nonsense_Mutation	G	T	p.S279X
KIRC	TCGA-DV-5566-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52685779:52685826:52692214:52692331:52696148:52696292,	52692215	52692331	52692298	52692298	Nonsense_Mutation	G	A	p.Q188X
KIRC	TCGA-B0-5702-01	ACLY	ENST00000352035.2,ENST00000590151.1	chr17	40049285:40049427:40054001:40054092:40054883:40055038,40052872:40052902:40054001:40054092:40054883:40055038,	40054002	40054092	40054059	40054059	Nonsense_Mutation	C	A	p.E458X
KIRC	TCGA-CJ-5684-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1160X
KIRC	TCGA-B0-4821-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114825216:114825313:114840817:114841004:114842353:114842445,	114840818	114841004	114840971	114840971	Nonsense_Mutation	C	A	p.E534X
KIRC	TCGA-A3-3380-01	MECR	ENST00000478505.2,ENST00000373791.3,ENST00000489248.1,ENST00000263702.6,ENST00000463412.1,ENST00000475861.2	chr1	29529727:29529745:29533273:29533417:29542516:29542541,	29533274	29533417	29533403	29533403	Nonsense_Mutation	C	A	p.E141X
KIRC	TCGA-B0-5706-01	ZFAND5	ENST00000376960.4,ENST00000237937.3,ENST00000488164.1,ENST00000376962.5,ENST00000471197.1,ENST00000343431.2	chr9	74970870:74971017:74971846:74971972:74974333:74974437,	74971847	74971972	74971943	74971943	Nonsense_Mutation	G	A	p.Q133X
KIRC	TCGA-CZ-5467-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835015	82835015	Nonsense_Mutation	G	T	p.E2065X
KIRC	TCGA-CZ-5467-01	NLRP2	ENST00000397169.3,ENST00000543010.1,ENST00000433772.2,ENST00000448584.2,ENST00000427260.2,ENST00000540597.1,ENST00000585500.1,ENST00000588619.1	chr19	55485867:55485912:55489119:55489191:55492984:55493007,	55489120	55489191	55489137	55489137	Nonsense_Mutation	C	T	p.R115X
KIRC	TCGA-AK-3451-01	CYP4A11	ENST00000468629.1,ENST00000462347.1,ENST00000371905.1,ENST00000474458.1,ENST00000475477.1,ENST00000465874.1,ENST00000371904.4,ENST00000310638.4,ENST00000457840.2	chr1	47401221:47401319:47402335:47402463:47402973:47403018,	47402336	47402463	47402390	47402390	Nonsense_Mutation	A	C	p.Y152X
KIRC	TCGA-B2-4098-01	RPN1	ENST00000296255.3,ENST00000497289.1	chr3	128348793:128348986:128350790:128351000:128356641:128356948,	128350791	128351000	128350832	128350832	Nonsense_Mutation	T	A	p.R268X
KIRC	TCGA-CJ-6031-01	ATG7	ENST00000354449.3,ENST00000424071.1,ENST00000446450.2,ENST00000354956.5	chr3	11383673:11383753:11389350:11389509:11399891:11400084,	11389351	11389509	11389435	11389435	Nonsense_Mutation	G	T	p.E404X
KIRC	TCGA-EU-5904-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105254	168105254	Nonsense_Mutation	C	A	p.S2451X
KIRC	TCGA-B0-5097-01	TMPRSS11D	ENST00000509584.1,ENST00000545541.1,ENST00000508409.1	chr4	68708275:68708343:68719785:68719904:68749643:68749678,	68719786	68719904	68719845	68719845	Nonsense_Mutation	G	A	p.Q64X
KIRC	TCGA-B0-5097-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108202170:108202284:108202605:108202764:108203488:108203627,	108202606	108202764	108202714	108202714	Nonsense_Mutation	A	T	p.R2580X
KIRC	TCGA-B0-5097-01	ALAS2	ENST00000396198.3,ENST00000330807.5,ENST00000335854.4	chrX	55035545:55035776:55039918:55040081:55041179:55041448,	55039919	55040081	55039931	55039931	Nonsense_Mutation	C	A	p.E530X
KIRC	TCGA-A3-A8CQ-01	SELE	ENST00000367774.1,ENST00000367782.4,ENST00000367777.1,ENST00000367776.1,ENST00000333360.7,ENST00000367779.4,ENST00000367781.4	chr1	169698628:169698814:169699572:169699758:169700975:169701083,	169699573	169699758	169699599	169699599	Nonsense_Mutation	C	T	p.W230X
KIRC	TCGA-CZ-5463-01	GAR1	ENST00000226796.6,ENST00000506840.1	chr4	110736983:110737161:110737308:110737534:110739091:110739246,110736833:110736960:110737308:110737534:110739091:110739246,	110737309	110737534	110737330	110737330	Nonsense_Mutation	C	T	p.R4X
KIRC	TCGA-BP-5199-01	FOXRED1	ENST00000532101.1,ENST00000534315.1,ENST00000263578.5,ENST00000532125.1	chr11	126141331:126141552:126142863:126142974:126143230:126143349,	126142864	126142974	126142905	126142905	Nonsense_Mutation	T	A	p.C116X
KIRC	TCGA-B2-3924-01	PIBF1	ENST00000326291.6	chr13	73467921:73468087:73482668:73482819:73491213:73491304,	73482669	73482819	73482729	73482729	Nonsense_Mutation	C	T	p.Q517X
KIRC	TCGA-CJ-6032-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094308	27094308	Nonsense_Mutation	G	T	p.E1006X
KIRC	TCGA-B0-5104-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19277893:19278029:19297340:19297442:19315936:19316153,	19297341	19297442	19297429	19297429	Nonsense_Mutation	C	A	p.E289X
KIRC	TCGA-CJ-5689-01	ANK2	ENST00000394537.3,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000510275.2,ENST00000503423.1,ENST00000509550.1,ENST00000264366.6,ENST00000514960.1	chr4	114262867:114263072:114264172:114264298:114267055:114267178,	114264173	114264298	114264182	114264182	Nonsense_Mutation	G	T	p.G1378X
KIRC	TCGA-B0-5699-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000414883.1,ENST00000282641.2,ENST00000373995.3,ENST00000395495.1,ENST00000473480.1,ENST00000395489.2	chr10	52595833:52596072:52601621:52601752:52603747:52603882,	52601622	52601752	52601746	52601746	Nonsense_Mutation	T	A	p.K89X
KIRC	TCGA-B0-5699-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563340	32563340	Nonsense_Mutation	T	G	p.Y1155X
KIRC	TCGA-B4-5377-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47532717:47532738:47533921:47533987:47535785:47535839,	47533922	47533987	47533975	47533975	Nonsense_Mutation	C	A	p.Y263X
KIRC	TCGA-CJ-4918-01	EML4	ENST00000402711.2,ENST00000409040.1,ENST00000401738.3	chr2	42396600:42396776:42472644:42472827:42483640:42483770,	42472645	42472827	42472705	42472705	Nonsense_Mutation	C	A	p.S29X
KIRC	TCGA-CJ-4918-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10626618:10626732:10627586:10627751:10628607:10628758,	10627587	10627751	10627597	10627597	Nonsense_Mutation	G	T	p.Y625X
KIRC	TCGA-B8-5159-01	MRPS15	ENST00000373116.5	chr1	36923523:36923582:36926292:36926377:36926864:36926913,	36926293	36926377	36926350	36926350	Nonsense_Mutation	G	A	p.Q110X
KIRC	TCGA-B8-5159-01	CCDC125	ENST00000511257.1,ENST00000396499.1,ENST00000396496.2	chr5	68578716:68578861:68581163:68581294:68588014:68588174,	68581164	68581294	68581285	68581285	Nonsense_Mutation	G	C	p.S370X
KIRC	TCGA-DV-5567-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000418559.1	chr2	183608384:183608439:183616384:183616512:183616798:183616915,	183616385	183616512	183616491	183616491	Nonsense_Mutation	G	A	p.W471X
KIRC	TCGA-B8-4148-01	PSAT1	ENST00000376588.3	chr9	80912058:80912186:80915517:80915578:80916869:80916939,	80915518	80915578	80915578	80915578	Nonsense_Mutation	G	T	p.E41X
KIRC	TCGA-BP-4991-01	CPB1	ENST00000468341.1,ENST00000282957.4,ENST00000491148.1,ENST00000462345.1,ENST00000465718.1	chr3	148545788:148545864:148552284:148552409:148558472:148558498,	148552285	148552409	148552315	148552315	Nonsense_Mutation	C	T	p.Q60X
KIRC	TCGA-BP-4801-01	CIB2	ENST00000559645.1	chr15	78398195:78398276:78401576:78401851:78416046:78416081,	78401577	78401851	78401625	78401625	Nonsense_Mutation	C	A	p.E100X
KIRC	TCGA-BP-4801-01	CIB2	ENST00000557917.1	chr15	78398195:78398276:78401576:78401724:78423506:78423567,78398195:78398276:78401576:78401724:78416046:78416081,	78401577	78401724	78401625	78401625	Nonsense_Mutation	C	A	p.E100X
KIRC	TCGA-BP-5169-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125380	47125380	Nonsense_Mutation	C	A	p.E1964X
KIRC	TCGA-A3-3373-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52678719:52678805:52682359:52682458:52685757:52685826,	52682360	52682458	52682446	52682446	Nonsense_Mutation	T	A	p.K243X
KIRC	TCGA-A3-3322-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	154026703:154026883:154027245:154027308:154029290:154029342,	154027246	154027308	154027278	154027278	Nonsense_Mutation	T	A	p.K1091X
KIRC	TCGA-CJ-4912-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440753	27440753	Nonsense_Mutation	G	C	p.S126X
KIRC	TCGA-CJ-4902-01	TP53I3	ENST00000313482.4	chr2	24305870:24306022:24307058:24307201:24307600:24307655,	24307059	24307201	24307100	24307100	Nonsense_Mutation	T	A	p.K33X
KIRC	TCGA-CJ-4902-01	MEIS1	ENST00000490726.1,ENST00000272369.9,ENST00000398506.2,ENST00000407092.2,ENST00000488550.1,ENST00000444274.2,ENST00000560281.2	chr2	66666452:66666803:66666974:66667116:66667693:66667744,66664938:66665095:66666974:66667116:66667693:66667744,	66666975	66667116	66667009	66667009	Nonsense_Mutation	G	T	p.E92X
KIRC	TCGA-CJ-4902-01	P2RX2	ENST00000350048.5,ENST00000449132.2	chr12	133195426:133195575:133196024:133196160:133196429:133196505,	133196025	133196160	133196058	133196058	Nonsense_Mutation	G	T	p.E47X
KIRC	TCGA-CZ-5458-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000512198.1,ENST00000506345.1,ENST00000360541.5	chr5	137847213:137847293:137848452:137848643:137849256:137849395,	137848453	137848643	137848455	137848455	Nonsense_Mutation	G	A	p.Q244X
KIRC	TCGA-CZ-5466-01	SLC22A9	ENST00000279178.3,ENST00000310969.4	chr11	63174044:63174183:63175583:63175692:63176147:63176351,	63175584	63175692	63175623	63175623	Nonsense_Mutation	T	A	p.L443X
KIRC	TCGA-CZ-5466-01	ZBTB44	ENST00000357899.4,ENST00000397753.1,ENST00000525842.1	chr11	130109706:130109791:130130750:130131824:130184269:130184486,	130130751	130131824	130131008	130131008	Nonsense_Mutation	A	T	p.L254X
KIRC	TCGA-B0-4698-01	SLC44A5	ENST00000370859.3,ENST00000535611.1,ENST00000370855.5	chr1	75685484:75685577:75688045:75688145:75693410:75693542,	75688046	75688145	75688056	75688056	Nonsense_Mutation	C	A	p.E359X
KIRC	TCGA-B0-4698-01	KCNT1	ENST00000460750.1,ENST00000491806.2,ENST00000486577.2,ENST00000488444.2,ENST00000490355.2,ENST00000263604.3,ENST00000487664.1,ENST00000298480.5	chr9	138678042:138678367:138679945:138680008:138683642:138683727,	138679946	138680008	138679996	138679996	Nonsense_Mutation	G	T	p.G1140X
KIRC	TCGA-B0-4698-01	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000343706.4,ENST00000404234.3,ENST00000403121.1	chr22	26736401:26736598:26743684:26743879:26761337:26761532,26736401:26736598:26743684:26743879:26747017:26747209,	26743685	26743879	26743707	26743707	Nonsense_Mutation	C	A	p.C745X
KIRC	TCGA-BP-5187-01	ATG7	ENST00000451513.1,ENST00000354449.3,ENST00000423116.1,ENST00000446450.2,ENST00000451830.1,ENST00000354956.5	chr3	11340835:11340890:11348416:11348534:11350457:11350535,	11348417	11348534	11348441	11348441	Nonsense_Mutation	C	A	p.C80X
KIRC	TCGA-CJ-6030-01	TRIP12	ENST00000459841.1,ENST00000283943.5,ENST00000389045.3,ENST00000418123.1,ENST00000389044.4	chr2	230638812:230638977:230642030:230642195:230643148:230643181,	230642031	230642195	230642131	230642131	Nonsense_Mutation	G	T	p.S1735X
KIRC	TCGA-A3-3365-01	COPS4	ENST00000509093.1,ENST00000503682.1,ENST00000506443.1,ENST00000511653.1,ENST00000507376.1,ENST00000264389.2	chr4	83966778:83966858:83970318:83970470:83971033:83971112,	83970319	83970470	83970374	83970374	Nonsense_Mutation	C	A	p.C70X
KIRC	TCGA-B8-A7U6-01	DENND6A	ENST00000311128.5	chr3	57649362:57649443:57651849:57651962:57657982:57658025,	57651850	57651962	57651856	57651856	Nonsense_Mutation	G	C	p.Y142X
KIRC	TCGA-CJ-6027-01	NEBL	ENST00000377122.4	chr10	21120401:21120512:21124441:21124552:21129667:21129778,	21124442	21124552	21124510	21124510	Nonsense_Mutation	C	A	p.G461X
KIRC	TCGA-CJ-6027-01	LAG3	ENST00000203629.2	chr12	6886429:6886672:6886956:6887087:6887409:6887619,	6886957	6887087	6886962	6886962	Nonsense_Mutation	C	T	p.Q436X
KIRC	TCGA-CJ-4882-01	TMEM130	ENST00000339375.4,ENST00000546258.1,ENST00000450876.1,ENST00000416379.2	chr7	98453639:98453806:98457801:98457961:98467399:98467489,98453639:98453806:98457801:98457961:98460717:98461023,	98457802	98457961	98457932	98457932	Nonsense_Mutation	G	A	p.Q141X
KIRC	TCGA-B0-5080-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616967	116616967	Nonsense_Mutation	C	T	p.W410X
KIRC	TCGA-B0-5080-01	FAM118A	ENST00000441876.2,ENST00000216214.3	chr22	45723722:45723944:45726483:45726612:45728305:45728536,	45726484	45726612	45726595	45726595	Nonsense_Mutation	C	T	p.Q212X
KIRC	TCGA-B2-5639-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072716	60072716	Nonsense_Mutation	G	A	p.Q660X
KIRC	TCGA-B0-5106-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000589114.1,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34182636:34182731:34191914:34192058:34205473:34205712,	34191915	34192058	34192014	34192014	Nonsense_Mutation	A	T	p.K305X
KIRC	TCGA-B0-4700-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000434713.2,ENST00000483235.1	chr3	136060282:136060393:136062673:136062848:136067999:136068205,	136062674	136062848	136062774	136062774	Nonsense_Mutation	G	A	p.Q1116X
KIRC	TCGA-BP-4995-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277953	114277953	Nonsense_Mutation	C	T	p.Q2727X
KIRC	TCGA-CJ-6028-01	NRBP2	ENST00000529747.1,ENST00000533093.1,ENST00000327830.5,ENST00000532940.1,ENST00000442628.2,ENST00000533846.1	chr8	144919796:144919927:144920851:144920947:144921054:144921110,	144920852	144920947	144920929	144920929	Nonsense_Mutation	G	A	p.Q255X
KIRC	TCGA-CW-6087-01	CPT1A	ENST00000540367.1,ENST00000376618.2,ENST00000539743.1,ENST00000265641.5	chr11	68571467:68571569:68574934:68575106:68579904:68580044,	68574935	68575106	68575043	68575043	Nonsense_Mutation	C	T	p.W115X
KIRC	TCGA-CW-6087-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51131954	51131954	Nonsense_Mutation	C	A	p.E160X
KIRC	TCGA-B0-5115-01	ACTN2	ENST00000492634.1,ENST00000542672.1,ENST00000366578.4	chr1	236889232:236889320:236890977:236891056:236894532:236894614,	236890978	236891056	236891015	236891015	Nonsense_Mutation	C	T	p.R192X
KIRC	TCGA-B0-5115-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662984	52662984	Nonsense_Mutation	C	A	p.E457X
KIRC	TCGA-B0-5115-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789X
KIRC	TCGA-B0-5115-01	TRIM36	ENST00000513154.1	chr5	114482872:114483091:114499214:114499449:114505304:114505427,	114499215	114499449	114499350	114499350	Nonsense_Mutation	T	A	p.K55X
KIRC	TCGA-CJ-4641-01	BAP1	ENST00000296288.5,ENST00000471532.1,ENST00000460680.1	chr3	52440844:52440923:52441189:52441332:52441414:52441476,	52441190	52441332	52441304	52441304	Nonsense_Mutation	G	A	p.Q156X
KIRC	TCGA-BP-5180-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637711	52637711	Nonsense_Mutation	G	A	p.Q869X
KIRC	TCGA-BP-5180-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70517037:70517167:70533269:70533486:70536176:70536432,	70533270	70533486	70533276	70533276	Nonsense_Mutation	C	T	p.Q462X
KIRC	TCGA-B8-4143-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115220530:115220662:115220953:115221148:115222199:115222329,	115220954	115221148	115221022	115221022	Nonsense_Mutation	T	A	p.K375X
KIRC	TCGA-B2-4101-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47127684:47127804:47129602:47129737:47139444:47139571,	47129603	47129737	47129722	47129722	Nonsense_Mutation	C	A	p.E1720X
KIRC	TCGA-BP-4161-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35295692:35295927:35310463:35310778:35313895:35313986,	35310464	35310778	35310690	35310690	Nonsense_Mutation	G	T	p.E330X
KIRC	TCGA-BP-5168-01	PITHD1	ENST00000246151.4	chr1	24105927:24105971:24106353:24106431:24112164:24112269,	24106354	24106431	24106410	24106410	Nonsense_Mutation	C	G	p.S100X
KIRC	TCGA-BP-5168-01	PTPN13	ENST00000316707.6	chr4	87674161:87674218:87679412:87679502:87679830:87679938,87672179:87672277:87679412:87679502:87679830:87679938,87666118:87666281:87679412:87679502:87679830:87679938,	87679413	87679502	87679432	87679432	Nonsense_Mutation	G	A	p.W1081X
KIRC	TCGA-BP-5168-01	ACAD10	ENST00000508303.1,ENST00000392636.2	chr12	112165765:112165947:112167609:112167760:112171726:112171851,112159474:112159543:112167609:112167760:112171726:112171851,	112167610	112167760	112167663	112167663	Nonsense_Mutation	G	T	p.E464X
KIRC	TCGA-B0-5092-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439913	52439913	Nonsense_Mutation	G	A	p.Q267X
KIRC	TCGA-B0-5092-01	SUZ12	ENST00000322652.5,ENST00000580398.1	chr17	30300164:30300250:30302500:30302732:30303539:30303633,	30302501	30302732	30302576	30302576	Nonsense_Mutation	A	T	p.K223X
KIRC	TCGA-B0-4852-01	CNTRL	ENST00000373865.2,ENST00000373855.1,ENST00000238341.5	chr9	123860663:123860850:123870079:123870273:123874736:123874856,	123870080	123870273	123870184	123870184	Nonsense_Mutation	A	T	p.K305X
KIRC	TCGA-CW-5581-01	JMJD4	ENST00000480590.1,ENST00000366758.3,ENST00000438896.2	chr1	227921319:227921382:227921607:227921733:227922351:227922517,	227921608	227921733	227921679	227921679	Nonsense_Mutation	C	T	p.W207X
KIRC	TCGA-CW-5581-01	LYG1	ENST00000308528.4,ENST00000409448.1	chr2	99900719:99900974:99901150:99901283:99907699:99907884,	99901151	99901283	99901199	99901199	Nonsense_Mutation	C	A	p.E140X
KIRC	TCGA-CW-5581-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242928	141242928	Nonsense_Mutation	T	A	p.K990X
KIRC	TCGA-B8-A8YJ-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745518	135745518	Nonsense_Mutation	C	T	p.W308X
KIRC	TCGA-CJ-4904-01	GDF11	ENST00000546799.1	chr12	56137182:56137545:56142369:56142767:56143285:56143667,	56142370	56142767	56142619	56142619	Nonsense_Mutation	C	G	p.S232X
KIRC	TCGA-CJ-4904-01	ANKS1B	ENST00000551560.1,ENST00000333732.7,ENST00000549493.2,ENST00000546364.3	chr12	99194870:99194903:99222951:99223131:99225806:99225914,99201621:99201693:99222951:99223131:99225806:99225914,	99222952	99223131	99223072	99223072	Nonsense_Mutation	G	T	p.Y982X
KIRC	TCGA-A3-A8OV-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188287	10188287	Nonsense_Mutation	G	T	p.G144X
KIRC	TCGA-A3-A8OV-01	FCHO2	ENST00000507345.2,ENST00000341845.6,ENST00000287761.6,ENST00000430046.2	chr5	72286538:72286691:72302271:72302376:72313038:72313109,72286538:72286691:72302271:72302376:72311452:72311551,	72302272	72302376	72302307	72302307	Nonsense_Mutation	T	G	p.Y177X
KIRC	TCGA-AK-3444-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097703	27097703	Nonsense_Mutation	C	T	p.Q1098X
KIRC	TCGA-B0-5120-01	DDR1	ENST00000376568.3,ENST00000376569.3,ENST00000376567.2,ENST00000454612.2,ENST00000482873.2,ENST00000418800.2,ENST00000376575.3,ENST00000508312.1,ENST00000452441.1,ENST00000446312.1,ENST00000513240.1,ENST00000324771.8,ENST00000376570.4	chr6	30865849:30866084:30866664:30866814:30866932:30867018,	30866665	30866814	30866812	30866812	Nonsense_Mutation	C	T	p.Q873X
KIRC	TCGA-B0-5120-01	SERPINF2	ENST00000450523.2	chr17	1648468:1648507:1648626:1648699:1650312:1650456,	1648627	1648699	1648687	1648687	Nonsense_Mutation	C	T	p.Q55X
KIRC	TCGA-BP-4983-01	RABGAP1	ENST00000373647.4,ENST00000456584.1	chr9	125759537:125759640:125760875:125761045:125772632:125772807,	125760876	125761045	125760994	125760994	Nonsense_Mutation	G	A	p.W441X
KIRC	TCGA-B2-5633-01	ATP13A5	ENST00000342358.4	chr3	193036779:193036897:193039469:193039626:193040279:193040363,	193039470	193039626	193039503	193039503	Nonsense_Mutation	C	A	p.E628X
KIRC	TCGA-B2-5633-01	FARP1	ENST00000595437.1,ENST00000376586.2,ENST00000319562.6	chr13	99076825:99076904:99083296:99083534:99087829:99087960,	99083297	99083534	99083480	99083480	Nonsense_Mutation	G	T	p.E697X
KIRC	TCGA-DV-A4W0-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437795	52437795	Nonsense_Mutation	G	A	p.Q456X
KIRC	TCGA-DV-5576-01	AHI1	ENST00000265602.6,ENST00000417892.2,ENST00000475846.2,ENST00000367800.4,ENST00000457866.2,ENST00000367799.2	chr6	135639656:135639754:135644299:135644462:135679269:135679325,	135644300	135644462	135644405	135644405	Nonsense_Mutation	C	A	p.G1075X
KIRC	TCGA-MM-A563-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000581631.1,ENST00000584897.1,ENST00000577880.1	chr18	2729272:2729407:2732262:2732490:2738394:2738543,	2732263	2732490	2732468	2732468	Nonsense_Mutation	C	A	p.S1085X
KIRC	TCGA-B0-5703-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108114679:108114845:108115514:108115753:108117690:108117854,	108115515	108115753	108115600	108115600	Nonsense_Mutation	C	T	p.R250X
KIRC	TCGA-B0-5703-01	DNAH3	ENST00000261383.3,ENST00000396036.1,ENST00000415178.1	chr16	21133265:21133445:21136495:21136691:21139007:21139133,	21136496	21136691	21136611	21136611	Nonsense_Mutation	G	C	p.S430X
KIRC	TCGA-A3-A6NL-01	UTRN	ENST00000367545.3	chr6	144872100:144872218:144875823:144876029:144878292:144878447,	144875824	144876029	144876009	144876009	Nonsense_Mutation	A	T	p.K2372X
KIRC	TCGA-CW-5580-01	TTC24	ENST00000368237.3,ENST00000368236.3	chr1	156552833:156552962:156553129:156553242:156553588:156553687,	156553130	156553242	156553240	156553240	Nonsense_Mutation	C	T	p.Q384X
KIRC	TCGA-CW-5580-01	ATP10A	ENST00000356865.6	chr15	25953343:25953447:25958820:25959388:25961876:25962071,	25958821	25959388	25959134	25959134	Nonsense_Mutation	C	T	p.W677X
KIRC	TCGA-CZ-5470-01	ZMYM4	ENST00000441447.1	chr1	35734633:35734686:35790960:35791006:35824525:35824830,35761527:35761589:35790960:35791006:35824525:35824830,	35790961	35791006	35790967	35790967	Nonsense_Mutation	C	T	p.Q16X
KIRC	TCGA-CZ-5470-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125187	12125187	Nonsense_Mutation	C	A	p.S1720X
KIRC	TCGA-CZ-5987-01	PRRC2A	ENST00000376033.2,ENST00000469577.1,ENST00000376007.4	chr6	31593236:31593388:31593568:31593648:31593796:31593939,	31593569	31593648	31593611	31593611	Nonsense_Mutation	C	T	p.Q268X
KIRC	TCGA-EU-5905-01	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785764	28785764	Nonsense_Mutation	C	A	p.S72X
KIRC	TCGA-EU-5905-01	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248528	141248528	Nonsense_Mutation	G	T	p.S170X
KIRC	TCGA-DV-A4VX-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022574	11022574	Nonsense_Mutation	G	T	p.E230X
KIRC	TCGA-CJ-4920-01	MFN1	ENST00000480636.1	chr3	179095131:179095236:179096128:179096602:179103356:179103509,	179096129	179096602	179096586	179096586	Nonsense_Mutation	C	A	p.S549X
KIRC	TCGA-CZ-4866-01	ABCB1	ENST00000265724.3	chr7	87195385:87195557:87196100:87196292:87199487:87199539,	87196101	87196292	87196210	87196210	Nonsense_Mutation	C	A	p.G141X
KIRC	TCGA-AK-3456-01	CTSK	ENST00000271651.3,ENST00000443913.1	chr1	150778336:150778492:150778577:150778700:150779161:150779244,	150778578	150778700	150778608	150778608	Nonsense_Mutation	A	T	p.Y71X
KIRC	TCGA-AK-3456-01	FAM86C1	ENST00000426628.2	chr11	71500828:71500891:71502784:71502865:71507062:71507212,	71502785	71502865	71502832	71502832	Nonsense_Mutation	T	A	p.Y69X
KIRC	TCGA-AK-3456-01	FAM86C1	ENST00000510443.1	chr11	71500828:71500891:71502781:71502865:71504425:71504527,71500828:71500891:71502781:71502865:71507062:71507212,	71502782	71502865	71502832	71502832	Nonsense_Mutation	T	A	p.Y69X
KIRC	TCGA-CJ-4639-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108099904:108100050:108106396:108106561:108114679:108114811,	108106397	108106561	108106450	108106450	Nonsense_Mutation	A	T	p.K129X
KIRC	TCGA-BP-5198-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412360	77412360	Nonsense_Mutation	A	T	p.C638X
KIRC	TCGA-CJ-4637-01	ST3GAL3	ENST00000372369.1,ENST00000530581.1,ENST00000533212.1,ENST00000361400.4,ENST00000490541.1,ENST00000495482.1,ENST00000372375.2,ENST00000332628.6,ENST00000347631.2,ENST00000372372.2,ENST00000361392.4,ENST00000372368.2,ENST00000372374.2,ENST00000262915.3,ENST00000372377.4,ENST00000335430.6,ENST00000469715.1,ENST00000361746.4,ENST00000351035.3	chr1	44386165:44386222:44386453:44386600:44395803:44395874,	44386454	44386600	44386570	44386570	Nonsense_Mutation	T	A	p.Y405X
KIRC	TCGA-CZ-4853-01	KPNA4	ENST00000334256.4	chr3	160225894:160226057:160227587:160227659:160231864:160231969,	160227588	160227659	160227602	160227602	Nonsense_Mutation	C	A	p.G399X
KIRC	TCGA-CZ-4853-01	RIC8B	ENST00000470628.2,ENST00000392839.2,ENST00000462949.1,ENST00000392837.4	chr12	107177774:107177822:107208473:107209082:107219503:107219598,	107208474	107209082	107209026	107209026	Nonsense_Mutation	G	T	p.E229X
KIRC	TCGA-B0-4842-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000496323.1	chr2	54882206:54882345:54883050:54883135:54884986:54885183,	54883051	54883135	54883108	54883108	Nonsense_Mutation	G	T	p.E2007X
KIRC	TCGA-B0-4842-01	IRAK1	ENST00000477274.1,ENST00000443220.1,ENST00000369980.3,ENST00000393687.2,ENST00000393682.1,ENST00000369974.2,ENST00000429936.2	chrX	153282399:153282518:153283456:153283571:153283741:153283806,	153283457	153283571	153283528	153283528	Nonsense_Mutation	G	A	p.Q280X
KIRC	TCGA-B8-4622-01	MYBL2	ENST00000396863.4,ENST00000217026.4	chr20	42341641:42341746:42343773:42343923:42344598:42344728,	42343774	42343923	42343846	42343846	Nonsense_Mutation	C	T	p.Q633X
KIRC	TCGA-CZ-4856-01	DNAH9	ENST00000262442.4,ENST00000454412.2	chr17	11584039:11584206:11592882:11593753:11597184:11597315,	11592883	11593753	11593688	11593688	Nonsense_Mutation	C	T	p.R1517X
KIRC	TCGA-MM-A84U-01	WRAP73	ENST00000419924.2,ENST00000270708.7,ENST00000424367.1	chr1	3563229:3563346:3563971:3564124:3566494:3566590,	3563972	3564124	3564107	3564107	Nonsense_Mutation	G	C	p.Y29X
KIRC	TCGA-B0-5695-01	CACYBP	ENST00000367679.2,ENST00000473925.1	chr1	174969316:174969331:174973749:174973969:174975880:174975907,	174973750	174973969	174973753	174973753	Nonsense_Mutation	C	T	p.Q7X
KIRC	TCGA-B0-5695-01	CACYBP	ENST00000406752.1	chr1	174969316:174969331:174973749:174973950:174975880:174975907,	174973750	174973950	174973753	174973753	Nonsense_Mutation	C	T	p.Q7X
KIRC	TCGA-B8-A54F-01	CACNA1D	ENST00000288139.4,ENST00000481478.1	chr3	53752331:53752415:53752708:53752768:53753781:53753808,	53752709	53752768	53752717	53752717	Nonsense_Mutation	G	A	p.W496X
KIRC	TCGA-B8-A54F-01	MADD	ENST00000524686.1,ENST00000342922.4,ENST00000402799.1,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47307028:47307141:47307983:47308085:47310941:47311044,	47307984	47308085	47308085	47308085	Nonsense_Mutation	G	T	p.G885X
KIRC	TCGA-CW-6093-01	EXD3	ENST00000342129.4,ENST00000340951.4,ENST00000490886.1	chr9	140248790:140248829:140249151:140249225:140250719:140250820,	140249152	140249225	140249170	140249170	Nonsense_Mutation	G	T	p.C271X
KIRC	TCGA-CW-6093-01	EXD3	ENST00000491734.2,ENST00000472958.1	chr9	140248790:140248829:140249018:140249225:140250719:140250820,	140249019	140249225	140249170	140249170	Nonsense_Mutation	G	T	p.C271X
KIRC	TCGA-CW-6093-01	ZNF202	ENST00000530393.1,ENST00000529691.1,ENST00000336139.4	chr11	123597564:123597699:123598183:123598303:123598840:123598970,	123598184	123598303	123598248	123598248	Nonsense_Mutation	C	T	p.W296X
KIRC	TCGA-A3-A8OU-01	CPSF2	ENST00000298875.4	chr14	92604575:92604691:92608507:92608695:92609347:92609638,	92608508	92608695	92608577	92608577	Nonsense_Mutation	T	A	p.L244X
KIRC	TCGA-A3-A8OU-01	VRK1	ENST00000216639.3,ENST00000555067.1	chr14	97326983:97327072:97342366:97342457:97347513:97347596,	97342367	97342457	97342370	97342370	Nonsense_Mutation	C	T	p.R358X
KIRC	TCGA-B0-5095-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437782	52437782	Nonsense_Mutation	G	C	p.S460X
KIRC	TCGA-B0-5119-01	WDR25	ENST00000335290.6	chr14	100842775:100842832:100847246:100848083:100934357:100934505,100842769:100842841:100847246:100848083:100934357:100934505,100842877:100843041:100847246:100848083:100934357:100934505,	100847247	100848083	100847489	100847489	Nonsense_Mutation	T	A	p.Y76X
KIRC	TCGA-GK-A6C7-01	GLMN	ENST00000495106.1,ENST00000463560.1,ENST00000370360.3	chr1	92731975:92732049:92733469:92733559:92733661:92733692,92732256:92732298:92733469:92733559:92733661:92733692,	92733470	92733559	92733559	92733559	Nonsense_Mutation	C	A	p.E337X
KIRC	TCGA-G6-A8L6-01	MID1	ENST00000380787.1	chrX	10491131:10491227:10534927:10535643:10588329:10588459,10491131:10491227:10534927:10535643:10557626:10557949,10491131:10491227:10534927:10535643:10851672:10851762,	10534928	10535643	10535176	10535176	Nonsense_Mutation	C	A	p.E138X
KIRC	TCGA-G6-A8L6-01	EBP	ENST00000498425.1	chrX	48380256:48380295:48382141:48382460:48385376:48385413,	48382142	48382460	48382199	48382199	Nonsense_Mutation	C	T	p.Q14X
KIRC	TCGA-BP-4992-01	CLUH	ENST00000572014.1,ENST00000575014.1,ENST00000574210.1,ENST00000574426.2,ENST00000570628.2,ENST00000435359.1,ENST00000538975.1	chr17	2595864:2595990:2596073:2596154:2597193:2597333,	2596074	2596154	2596082	2596082	Nonsense_Mutation	G	A	p.Q1063X
KIRC	TCGA-B0-4810-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000461720.1,ENST00000358392.2,ENST00000370096.3	chr1	103468302:103468347:103468770:103468824:103469999:103470037,	103468771	103468824	103468818	103468818	Nonsense_Mutation	G	A	p.R663X
KIRC	TCGA-B0-4810-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5789390	5789390	Nonsense_Mutation	G	T	p.E1336X
KIRC	TCGA-B0-4810-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462474	5462474	Nonsense_Mutation	C	T	p.W514X
KIRC	TCGA-A3-3319-01	KLK6	ENST00000391808.1,ENST00000594641.1,ENST00000376851.3,ENST00000310157.2,ENST00000599690.1	chr19	51464999:51465136:51466557:51466805:51470424:51470581,	51466558	51466805	51466690	51466690	Nonsense_Mutation	G	A	p.Q105X
KIRC	TCGA-AK-3430-01	DHX15	ENST00000336812.4	chr4	24557873:24558033:24572276:24572470:24577865:24578301,	24572277	24572470	24572443	24572443	Nonsense_Mutation	G	A	p.R179X
KIRC	TCGA-A3-3320-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649373	52649373	Nonsense_Mutation	T	A	p.K640X
KIRC	TCGA-A3-3320-01	TPTE2	ENST00000382978.1,ENST00000400103.2,ENST00000255310.6,ENST00000457266.2,ENST00000382977.4,ENST00000400230.2,ENST00000390680.2,ENST00000382975.4	chr13	19997191:19997304:19999086:19999157:19999846:19999973,19997191:19997304:19999086:19999157:20000564:20000657,	19999087	19999157	19999143	19999143	Nonsense_Mutation	G	C	p.Y470X
KIRC	TCGA-B0-5075-01	TBC1D5	ENST00000429383.4,ENST00000253692.7,ENST00000414318.2	chr3	17255698:17255862:17279654:17279911:17299997:17300083,	17279655	17279911	17279709	17279709	Nonsense_Mutation	G	A	p.Q512X
KIRC	TCGA-B0-5075-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39509935:39510091:39511989:39512076:39514366:39514528,	39511990	39512076	39511999	39511999	Nonsense_Mutation	A	C	p.Y659X
KIRC	TCGA-B0-4945-01	TTYH1	ENST00000425969.1	chr19	54926780:54926852:54930301:54930480:54932450:54932517,54926780:54926852:54930301:54930480:54933363:54933422,	54930302	54930480	54930442	54930442	Nonsense_Mutation	C	A	p.C89X
KIRC	TCGA-BP-4981-01	PHF20	ENST00000374000.4,ENST00000481202.1,ENST00000439301.1,ENST00000339089.6,ENST00000374012.3	chr20	34459571:34459751:34487291:34487570:34501170:34501238,	34487292	34487570	34487450	34487450	Nonsense_Mutation	A	T	p.K481X
KIRC	TCGA-CZ-5451-01	SF3A3	ENST00000448721.2,ENST00000470585.1,ENST00000461869.1	chr1	38453455:38453508:38455219:38455267:38455541:38455645,38450378:38450451:38455219:38455267:38455541:38455645,	38455220	38455267	38455225	38455225	Nonsense_Mutation	G	A	p.Q47X
KIRC	TCGA-CZ-5451-01	ROCK1	ENST00000399799.2	chr18	18540096:18540167:18546877:18547037:18547712:18547901,	18546878	18547037	18546995	18546995	Nonsense_Mutation	G	A	p.Q1079X
KIRC	TCGA-CJ-4901-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30064321:30064435:30067814:30067937:30069257:30069475,	30067815	30067937	30067836	30067836	Nonsense_Mutation	C	T	p.R341X
KIRC	TCGA-CZ-5982-01	FBL	ENST00000601274.1,ENST00000598417.1,ENST00000599134.1,ENST00000597634.1,ENST00000599159.1,ENST00000597224.1,ENST00000221801.3,ENST00000594309.1	chr19	40329791:40329845:40330872:40330967:40331053:40331155,	40330873	40330967	40330954	40330954	Nonsense_Mutation	A	T	p.C99X
KIRC	TCGA-DV-5569-01	CTNNAL1	ENST00000374595.4,ENST00000325551.4	chr9	111732681:111732774:111734954:111735113:111739241:111739328,	111734955	111735113	111735095	111735095	Nonsense_Mutation	G	A	p.Q403X
KIRC	TCGA-AS-3778-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836039	35836039	Nonsense_Mutation	C	A	p.S331X
KIRC	TCGA-AS-3778-01	CASP14	ENST00000221740.1,ENST00000427043.3	chr19	15164295:15164442:15164543:15164769:15165968:15166085,	15164544	15164769	15164766	15164766	Nonsense_Mutation	G	T	p.G134X
KIRC	TCGA-CZ-5459-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748191	43748191	Nonsense_Mutation	G	T	p.S872X
KIRC	TCGA-CZ-5459-01	MMP11	ENST00000215743.3,ENST00000460352.1,ENST00000477567.1,ENST00000437086.1,ENST00000465385.1	chr22	24122545:24122689:24122768:24122902:24123045:24123194,	24122769	24122902	24122848	24122848	Nonsense_Mutation	G	T	p.E188X
KIRC	TCGA-CZ-5455-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637555	52637555	Nonsense_Mutation	G	A	p.R921X
KIRC	TCGA-CW-5587-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673335	75673335	Nonsense_Mutation	C	T	p.Q167X
KIRC	TCGA-BP-5183-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331781	20331781	Nonsense_Mutation	G	A	p.Q224X
KIRC	TCGA-CZ-5468-01	KLHL24	ENST00000242810.6,ENST00000454652.2	chr3	183361267:183361330:183368083:183369064:183381245:183381430,	183368084	183369064	183368652	183368652	Nonsense_Mutation	G	T	p.G170X
KIRC	TCGA-CZ-5468-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102560	61102560	Nonsense_Mutation	C	T	p.Q401X
KIRC	TCGA-CZ-5461-01	TMOD2	ENST00000249700.4,ENST00000435126.2,ENST00000539962.2,ENST00000561407.1	chr15	52090393:52090537:52098573:52098718:52100616:52100647,	52098574	52098718	52098676	52098676	Nonsense_Mutation	C	T	p.R327X
KIRC	TCGA-CZ-5461-01	PMFBP1	ENST00000237353.10,ENST00000355636.6,ENST00000537465.1,ENST00000379073.5	chr16	72157444:72157548:72158665:72158833:72159136:72159304,	72158666	72158833	72158692	72158692	Nonsense_Mutation	C	A	p.E855X
KIRC	TCGA-BP-5185-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188207	10188207	Nonsense_Mutation	G	A	p.W117X
KIRC	TCGA-B0-5691-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832047	39832047	Nonsense_Mutation	C	A	p.E504X
KIRC	TCGA-B0-5691-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832047	39832047	Nonsense_Mutation	C	A	p.E504X
KIRC	TCGA-BP-4989-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101917	168101917	Nonsense_Mutation	A	T	p.K1339X
KIRC	TCGA-CJ-5682-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098903	47098903	Nonsense_Mutation	A	T	p.L2124X
KIRC	TCGA-B0-5109-01	FGFR3	ENST00000340107.4	chr4	1803561:1803752:1804640:1804791:1806056:1806247,	1804641	1804791	1804696	1804696	Nonsense_Mutation	C	A	p.S329X
KIRC	TCGA-BP-4982-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702612	52702612	Nonsense_Mutation	T	A	p.K96X
KIRC	TCGA-B0-4827-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91660825:91660918:91667732:91668086:91669987:91670212,	91667733	91668086	91668040	91668040	Nonsense_Mutation	C	G	p.S1549X
KIRC	TCGA-BP-5006-01	METTL4	ENST00000576251.1	chr18	2538451:2539144:2547353:2547528:2552693:2552763,	2547354	2547528	2547514	2547514	Nonsense_Mutation	G	C	p.S305X
KIRC	TCGA-CJ-4907-01	DTNBP1	ENST00000515875.1,ENST00000506844.1,ENST00000338950.5,ENST00000344537.5,ENST00000511762.2,ENST00000510395.1,ENST00000355917.3,ENST00000513680.1	chr6	15615497:15615630:15627573:15627706:15637974:15638035,	15627574	15627706	15627643	15627643	Nonsense_Mutation	C	A	p.E96X
KIRC	TCGA-CJ-4907-01	PAH	ENST00000549247.1,ENST00000551114.1,ENST00000307000.2,ENST00000553106.1	chr12	103238113:103238209:103240672:103240729:103245464:103245534,	103240673	103240729	103240687	103240687	Nonsense_Mutation	C	A	p.E319X
KIRC	TCGA-A3-3323-01	C1orf198	ENST00000470540.1,ENST00000522201.1	chr1	230979582:230979642:230991413:230991464:231003925:231004136,	230991414	230991464	230991424	230991424	Nonsense_Mutation	C	T	p.W125X
KIRC	TCGA-A3-3323-01	HSPA9	ENST00000297185.3,ENST00000507097.1	chr5	137897268:137897478:137902314:137902407:137902689:137902852,	137902315	137902407	137902359	137902359	Nonsense_Mutation	C	A	p.E310X
KIRC	TCGA-B0-5709-01	STT3A	ENST00000531491.1,ENST00000529196.1,ENST00000392708.4	chr11	125478042:125478184:125479328:125479484:125481322:125481414,	125479329	125479484	125479362	125479362	Nonsense_Mutation	C	A	p.S332X
KIRC	TCGA-B0-5709-01	ACE2	ENST00000252519.3,ENST00000427411.1	chrX	15590323:15590446:15591489:15591588:15593788:15593933,	15591490	15591588	15591566	15591566	Nonsense_Mutation	C	A	p.E489X
KIRC	TCGA-CJ-5678-01	RMDN2	ENST00000407257.1,ENST00000234195.3	chr2	38177653:38177738:38178375:38179344:38201182:38201357,	38178376	38179344	38179040	38179040	Nonsense_Mutation	C	T	p.Q228X
KIRC	TCGA-A3-3311-01	CTDSPL2	ENST00000396780.1	chr15	44719839:44719970:44751188:44751398:44776421:44776512,	44751189	44751398	44751276	44751276	Nonsense_Mutation	A	T	p.R22X
KIRC	TCGA-CW-5589-01	RAB3A	ENST00000464076.3,ENST00000222256.4	chr19	18307608:18308470:18309534:18309659:18311136:18311255,	18309535	18309659	18309636	18309636	Nonsense_Mutation	G	C	p.S124X
KIRC	TCGA-CZ-5456-01	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000538472.1,ENST00000420015.2	chr16	14704521:14704666:14711446:14711507:14720962:14720993,	14711447	14711507	14711480	14711480	Nonsense_Mutation	G	A	p.Q119X
KIRC	TCGA-BP-4968-01	ELF2	ENST00000379550.1,ENST00000265495.4,ENST00000358635.3,ENST00000394235.2,ENST00000510408.1	chr4	139981754:139981828:139983018:139983211:139988837:139988924,	139983019	139983211	139983076	139983076	Nonsense_Mutation	C	T	p.L190X
KIRC	TCGA-B8-5549-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150768158:150768384:150768476:150768692:150768775:150768924,	150768477	150768692	150768602	150768602	Nonsense_Mutation	C	T	p.R701X
KIRC	TCGA-B8-5549-01	CCDC3	ENST00000378839.1	chr10	12938626:12940679:13040337:13040512:13091673:13091941,	13040338	13040512	13040481	13040481	Nonsense_Mutation	C	A	p.G136X
KIRC	TCGA-A3-A6NN-01	CD27	ENST00000541233.1,ENST00000266557.3	chr12	6559338:6559518:6559706:6559796:6560060:6560180,	6559707	6559796	6559739	6559739	Nonsense_Mutation	C	T	p.Q161X
KIRC	TCGA-B0-5094-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484745	56484745	Nonsense_Mutation	C	A	p.E1363X
KIRC	TCGA-B0-5094-01	ATXN2L	ENST00000395547.2	chr16	28847443:28847497:28847646:28847811:28848048:28848240,	28847647	28847811	28847661	28847661	Nonsense_Mutation	A	T	p.R1052X
KIRC	TCGA-B0-5094-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847661	28847661	Nonsense_Mutation	A	T	p.R1052X
KIRC	TCGA-BP-4976-01	ANAPC7	ENST00000455511.3,ENST00000471602.2,ENST00000450008.2	chr12	110813936:110814021:110815197:110815422:110819556:110819663,	110815198	110815422	110815266	110815266	Nonsense_Mutation	A	T	p.L464X
KIRC	TCGA-BP-5009-01	COL3A1	ENST00000304636.3	chr2	189871070:189871178:189871662:189871716:189872225:189872333,	189871663	189871716	189871705	189871705	Nonsense_Mutation	C	T	p.R1082X
KIRC	TCGA-B0-5085-01	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351338	71351338	Nonsense_Mutation	C	A	p.E126X
KIRC	TCGA-B0-5085-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742525	124742525	Nonsense_Mutation	C	T	p.Q165X
KIRC	TCGA-CJ-5672-01	PDHB	ENST00000383714.4,ENST00000469364.1,ENST00000480626.1,ENST00000461692.1,ENST00000302746.6,ENST00000474765.1	chr3	58415936:58415965:58416383:58416669:58417319:58417355,	58416384	58416669	58416621	58416621	Nonsense_Mutation	G	A	p.Q118X
KIRC	TCGA-CJ-4636-01	DTNB	ENST00000405222.1,ENST00000407038.3,ENST00000545439.1,ENST00000485845.1,ENST00000398951.2,ENST00000288642.8,ENST00000356599.5,ENST00000406818.3,ENST00000407661.3,ENST00000496972.2,ENST00000407186.1,ENST00000404103.3	chr2	25705664:25705742:25754341:25754466:25799706:25799873,	25754342	25754466	25754451	25754451	Nonsense_Mutation	T	A	p.K298X
KIRC	TCGA-BP-4963-01	ZXDC	ENST00000389709.3	chr3	126158474:126158570:126160607:126160789:126178495:126178580,	126160608	126160789	126160625	126160625	Nonsense_Mutation	G	A	p.Q793X
KIRC	TCGA-EU-5907-01	KRT23	ENST00000209718.3,ENST00000582754.1,ENST00000436344.3	chr17	39084697:39084859:39086191:39086348:39087624:39087707,	39086192	39086348	39086293	39086293	Nonsense_Mutation	G	A	p.R179X
KIRC	TCGA-EU-5907-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1	chr17	67273781:67273983:67280093:67280213:67282038:67282178,	67280094	67280213	67280186	67280186	Nonsense_Mutation	G	C	p.S767X
KIRC	TCGA-B0-5812-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188290	10188290	Nonsense_Mutation	C	T	p.Q145X
KIRC	TCGA-B0-5812-01	TCN2	ENST00000215838.3,ENST00000407817.3,ENST00000405742.3,ENST00000450638.1	chr22	31013316:31013482:31018954:31019070:31022446:31022992,	31018955	31019070	31018990	31018990	Nonsense_Mutation	T	A	p.L381X
KIRC	TCGA-B0-5096-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545178	196545178	Nonsense_Mutation	G	T	p.E138X
KIRC	TCGA-B0-5096-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748161	43748161	Nonsense_Mutation	G	C	p.S882X
KIRC	TCGA-B8-5158-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717762	89717762	Nonsense_Mutation	A	T	p.K263X
KIRC	TCGA-B8-5164-01	PLD3	ENST00000492243.1	chr19	40872786:40872822:40873507:40873786:40875814:40875865,	40873508	40873786	40873738	40873738	Nonsense_Mutation	G	A	p.W127X
KIRC	TCGA-B8-5164-01	PLD3	ENST00000594908.1,ENST00000409735.4,ENST00000409587.1,ENST00000359274.5,ENST00000409281.1,ENST00000356508.5,ENST00000409419.1	chr19	40872786:40872822:40873602:40873786:40875814:40875865,	40873603	40873786	40873738	40873738	Nonsense_Mutation	G	A	p.W127X
KIRC	TCGA-A3-3311-01	CTDSPL2	ENST00000396780.1	chr15	44719839:44719970:44751188:44751398:44776421:44776512,	44751189	44751398	44751276	44751276	Nonsense_Mutation	A	T	p.R22*
KIRC	TCGA-A3-3316-01	FLVCR2	ENST00000539311.1,ENST00000238667.4,ENST00000553587.1	chr14	76091038:76091095:76099971:76100039:76101252:76101356,	76099972	76100039	76100036	76100036	Nonsense_Mutation	C	G	p.Y339*
KIRC	TCGA-A3-3316-01	RANBP10	ENST00000536251.1,ENST00000602506.1,ENST00000411657.2,ENST00000602677.1,ENST00000448631.2,ENST00000317506.3	chr16	67763182:67763387:67763582:67763731:67763840:67763949,	67763583	67763731	67763619	67763619	Nonsense_Mutation	G	A	p.R371*
KIRC	TCGA-A3-3316-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816426	203816426	Nonsense_Mutation	C	A	p.S386*
KIRC	TCGA-A3-3319-01	KLK6	ENST00000391808.1,ENST00000594641.1,ENST00000376851.3,ENST00000310157.2,ENST00000599690.1	chr19	51464999:51465136:51466557:51466805:51470424:51470581,	51466558	51466805	51466690	51466690	Nonsense_Mutation	G	A	p.Q105*
KIRC	TCGA-A3-3320-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649373	52649373	Nonsense_Mutation	T	A	p.K608*
KIRC	TCGA-A3-3320-01	TPTE2	ENST00000382978.1,ENST00000400103.2,ENST00000255310.6,ENST00000457266.2,ENST00000382977.4,ENST00000400230.2,ENST00000390680.2,ENST00000382975.4	chr13	19997191:19997304:19999086:19999157:19999846:19999973,19997191:19997304:19999086:19999157:20000564:20000657,	19999087	19999157	19999143	19999143	Nonsense_Mutation	G	C	p.Y470*
KIRC	TCGA-A3-3322-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	154026703:154026883:154027245:154027308:154029290:154029342,	154027246	154027308	154027278	154027278	Nonsense_Mutation	T	A	p.K1091*
KIRC	TCGA-A3-3323-01	CCNB2	ENST00000559622.1,ENST00000288207.2	chr15	59406642:59406813:59406916:59407075:59408888:59409125,	59406917	59407075	59407028	59407028	Nonsense_Mutation	C	T	p.Q184*
KIRC	TCGA-A3-3323-01	HSPA9	ENST00000297185.3,ENST00000507097.1	chr5	137897268:137897478:137902314:137902407:137902689:137902852,	137902315	137902407	137902359	137902359	Nonsense_Mutation	C	A	p.E310*
KIRC	TCGA-A3-3323-01	C1orf198	ENST00000470540.1,ENST00000522201.1	chr1	230979582:230979642:230991413:230991464:231003925:231004136,	230991414	230991464	230991424	230991424	Nonsense_Mutation	C	T	p.W125*
KIRC	TCGA-A3-3331-01	ZBTB44	ENST00000357899.4,ENST00000397753.1,ENST00000525842.1	chr11	130109706:130109791:130130750:130131824:130184269:130184486,	130130751	130131824	130131510	130131510	Nonsense_Mutation	C	A	p.E87*
KIRC	TCGA-A3-3346-01	ABCC4	ENST00000538287.1,ENST00000376887.4,ENST00000412704.1,ENST00000431522.1,ENST00000536256.1	chr13	95858785:95859035:95860053:95860179:95861687:95861851,	95860054	95860179	95860093	95860093	Nonsense_Mutation	C	T	p.W291*
KIRC	TCGA-A3-3346-01	WDR19	ENST00000509560.1,ENST00000399820.3,ENST00000506503.1	chr4	39191275:39191401:39196163:39196279:39201097:39201213,	39196164	39196279	39196168	39196168	Nonsense_Mutation	C	T	p.Q99*
KIRC	TCGA-A3-3357-01	PLXDC1	ENST00000315392.4,ENST00000539608.1,ENST00000579190.1,ENST00000461225.1,ENST00000578390.1,ENST00000578517.1,ENST00000394318.3,ENST00000394316.2,ENST00000415163.1,ENST00000580667.1,ENST00000441877.1	chr17	37265156:37265226:37265500:37265644:37295906:37296085,	37265501	37265644	37265509	37265509	Nonsense_Mutation	G	A	p.Q131*
KIRC	TCGA-A3-3363-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123210172:123210404:123215733:123216151:123220727:123220800,	123215734	123216151	123215772	123215772	Nonsense_Mutation	G	A	p.Q919*
KIRC	TCGA-A3-3363-01	KLF8	ENST00000468660.1,ENST00000374928.3,ENST00000358094.5,ENST00000462627.1	chrX	56259621:56259774:56276663:56276737:56291612:56292177,	56276664	56276737	56276690	56276690	Nonsense_Mutation	G	T	p.E12*
KIRC	TCGA-A3-3365-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32260229:32260478:32369180:32369393:32446927:32447080,	32369181	32369393	32369279	32369279	Nonsense_Mutation	C	A	p.Y104*
KIRC	TCGA-A3-3365-01	COPS4	ENST00000509093.1,ENST00000503682.1,ENST00000506443.1,ENST00000511653.1,ENST00000507376.1,ENST00000264389.2	chr4	83966778:83966858:83970318:83970470:83971033:83971112,	83970319	83970470	83970374	83970374	Nonsense_Mutation	C	A	p.C70*
KIRC	TCGA-A3-3365-01	SCMH1	ENST00000326197.7,ENST00000372595.1,ENST00000402904.2,ENST00000361705.3,ENST00000397174.2,ENST00000397171.2,ENST00000361191.5,ENST00000372597.1,ENST00000372596.1,ENST00000337495.5	chr1	41540890:41541123:41578954:41579198:41582593:41582682,	41578955	41579198	41579034	41579034	Nonsense_Mutation	G	T	p.C212*
KIRC	TCGA-A3-3372-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203421005	203421005	Nonsense_Mutation	C	T	p.R873*
KIRC	TCGA-A3-3373-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52678719:52678805:52682359:52682458:52685757:52685826,	52682360	52682458	52682446	52682446	Nonsense_Mutation	T	A	p.K243*
KIRC	TCGA-A3-3374-01	MTG2	ENST00000466099.1,ENST00000448254.1,ENST00000370823.3,ENST00000536470.1	chr20	60772907:60773023:60773689:60773908:60774174:60774309,	60773690	60773908	60773849	60773849	Nonsense_Mutation	C	T	p.Q210*
KIRC	TCGA-A3-3374-01	RARB	ENST00000462272.1,ENST00000458646.1,ENST00000437042.2,ENST00000330688.4,ENST00000404969.1,ENST00000480001.1,ENST00000383772.4	chr3	25542672:25542814:25611248:25611409:25622036:25622213,	25611249	25611409	25611305	25611305	Nonsense_Mutation	G	T	p.E169*
KIRC	TCGA-A3-3374-01	C12orf4	ENST00000541014.1,ENST00000545746.1,ENST00000261250.3	chr12	4627223:4627421:4627939:4628046:4634419:4634541,	4627940	4628046	4628042	4628042	Nonsense_Mutation	C	A	p.E245*
KIRC	TCGA-A3-3374-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5,ENST00000342215.6,ENST00000471075.1	chr3	171392289:171392403:171394504:171394623:171395355:171395484,	171394505	171394623	171394541	171394541	Nonsense_Mutation	C	T	p.W584*
KIRC	TCGA-A3-3374-01	PDXK	ENST00000327574.4	chr21	45148797:45148891:45152019:45152528:45153949:45154004,	45152020	45152528	45152365	45152365	Nonsense_Mutation	C	A	p.S36*
KIRC	TCGA-A3-3374-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000463118.1,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91732000:91732140:91734991:91735077:91736606:91736736,	91734992	91735077	91735015	91735015	Nonsense_Mutation	G	A	p.W3789*
KIRC	TCGA-A3-3374-01	FLT3	ENST00000241453.7,ENST00000380987.2	chr13	28589726:28589838:28592603:28592726:28597486:28597614,	28592604	28592726	28592645	28592645	Nonsense_Mutation	G	A	p.R834*
KIRC	TCGA-A3-3374-01	FLT3	ENST00000380982.4	chr13	28589726:28589838:28592594:28592726:28597486:28597614,	28592595	28592726	28592645	28592645	Nonsense_Mutation	G	A	p.R834*
KIRC	TCGA-A3-3380-01	UBE4A	ENST00000252108.3,ENST00000431736.2	chr11	118244208:118244400:118245610:118245944:118247288:118247409,	118245611	118245944	118245844	118245844	Nonsense_Mutation	C	A	p.C450*
KIRC	TCGA-A3-3380-01	DCP1B	ENST00000280665.6,ENST00000397173.4,ENST00000543381.1,ENST00000536665.1,ENST00000540622.1	chr12	2061942:2062454:2064597:2064726:2074723:2074859,	2064598	2064726	2064624	2064624	Nonsense_Mutation	G	A	p.Q209*
KIRC	TCGA-A3-3382-01	SCG3	ENST00000542355.2,ENST00000220478.3	chr15	51975275:51975321:51975415:51975631:51980456:51980599,	51975416	51975631	51975487	51975487	Nonsense_Mutation	G	T	p.E85*
KIRC	TCGA-A3-3382-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662912	52662912	Nonsense_Mutation	G	A	p.Q449*
KIRC	TCGA-AK-3427-01	BRDT	ENST00000402388.1,ENST00000426141.1,ENST00000423434.1,ENST00000399546.2,ENST00000552654.1,ENST00000427104.1,ENST00000448194.1,ENST00000440509.1,ENST00000362005.3	chr1	92415861:92416031:92430183:92430321:92433702:92433781,92428363:92428503:92430183:92430321:92433702:92433781,	92430184	92430321	92430268	92430268	Nonsense_Mutation	G	T	p.E20*
KIRC	TCGA-AK-3444-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097703	27097703	Nonsense_Mutation	C	T	p.Q1098*
KIRC	TCGA-AK-3465-01	ABCC3	ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48744914:48745118:48745223:48745370:48745790:48745878,	48745224	48745370	48745244	48745244	Nonsense_Mutation	G	A	p.W552*
KIRC	TCGA-AS-3777-01	SLC44A4	ENST00000544672.1,ENST00000414427.1,ENST00000229729.6	chr6	31842236:31842297:31842497:31842623:31842705:31842805,	31842498	31842623	31842504	31842504	Nonsense_Mutation	C	T	p.W78*
KIRC	TCGA-AS-3778-01	CASP14	ENST00000221740.1,ENST00000427043.3	chr19	15164295:15164442:15164543:15164769:15165968:15166085,	15164544	15164769	15164766	15164766	Nonsense_Mutation	G	T	p.G134*
KIRC	TCGA-AS-3778-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836039	35836039	Nonsense_Mutation	C	A	p.S331*
KIRC	TCGA-AS-3778-01	RAB28	ENST00000508274.1,ENST00000330852.5	chr4	13370124:13370274:13378168:13378246:13383114:13383218,	13378169	13378246	13378197	13378197	Nonsense_Mutation	A	T	p.L182*
KIRC	TCGA-AS-3778-01	CDK5RAP1	ENST00000477105.1,ENST00000473997.1,ENST00000471264.1,ENST00000346416.2,ENST00000544843.1	chr20	31961945:31962018:31967266:31967497:31973455:31973576,	31967267	31967497	31967381	31967381	Nonsense_Mutation	A	T	p.Y345*
KIRC	TCGA-B0-4823-01	DNAH7	ENST00000312428.6	chr2	196750864:196750996:196752981:196753158:196753522:196753705,	196752982	196753158	196753118	196753118	Nonsense_Mutation	A	T	p.L1757*
KIRC	TCGA-B0-4827-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91660825:91660918:91667732:91668086:91669987:91670212,	91667733	91668086	91668040	91668040	Nonsense_Mutation	C	G	p.S1561*
KIRC	TCGA-B0-4842-01	IRAK1	ENST00000477274.1,ENST00000443220.1,ENST00000369980.3,ENST00000393687.2,ENST00000393682.1,ENST00000369974.2,ENST00000429936.2	chrX	153282399:153282518:153283456:153283571:153283741:153283806,	153283457	153283571	153283528	153283528	Nonsense_Mutation	G	A	p.Q280*
KIRC	TCGA-B0-4842-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000496323.1	chr2	54882206:54882345:54883050:54883135:54884986:54885183,	54883051	54883135	54883108	54883108	Nonsense_Mutation	G	T	p.E1994*
KIRC	TCGA-B0-5075-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39509935:39510091:39511989:39512076:39514366:39514528,	39511990	39512076	39511999	39511999	Nonsense_Mutation	A	C	p.Y457*
KIRC	TCGA-B0-5075-01	TBC1D5	ENST00000429383.4,ENST00000253692.7,ENST00000414318.2	chr3	17255698:17255862:17279654:17279911:17299997:17300083,	17279655	17279911	17279709	17279709	Nonsense_Mutation	G	A	p.Q512*
KIRC	TCGA-B0-5083-01	ARPP21	ENST00000417925.1,ENST00000458225.1,ENST00000187397.4,ENST00000481854.1	chr3	35758792:35758849:35763096:35763326:35770794:35770828,	35763097	35763326	35763134	35763134	Nonsense_Mutation	C	T	p.R345*
KIRC	TCGA-B0-5085-01	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351338	71351338	Nonsense_Mutation	C	A	p.E126*
KIRC	TCGA-B0-5085-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742525	124742525	Nonsense_Mutation	C	T	p.Q165*
KIRC	TCGA-B0-5092-01	SUZ12	ENST00000322652.5,ENST00000580398.1	chr17	30300164:30300250:30302500:30302732:30303539:30303633,	30302501	30302732	30302576	30302576	Nonsense_Mutation	A	T	p.K223*
KIRC	TCGA-B0-5092-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439913	52439913	Nonsense_Mutation	G	A	p.Q267*
KIRC	TCGA-B0-5094-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484745	56484745	Nonsense_Mutation	C	A	p.E1363*
KIRC	TCGA-B0-5094-01	ATXN2L	ENST00000395547.2	chr16	28847443:28847497:28847646:28847811:28848048:28848240,	28847647	28847811	28847661	28847661	Nonsense_Mutation	A	T	p.R1052*
KIRC	TCGA-B0-5094-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847661	28847661	Nonsense_Mutation	A	T	p.R1052*
KIRC	TCGA-B0-5095-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437782	52437782	Nonsense_Mutation	G	C	p.S460*
KIRC	TCGA-B0-5096-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748161	43748161	Nonsense_Mutation	G	C	p.S877*
KIRC	TCGA-B0-5096-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545178	196545178	Nonsense_Mutation	G	T	p.E138*
KIRC	TCGA-B0-5097-01	ALAS2	ENST00000396198.3,ENST00000330807.5,ENST00000335854.4	chrX	55035545:55035776:55039918:55040081:55041179:55041448,	55039919	55040081	55039931	55039931	Nonsense_Mutation	C	A	p.E530*
KIRC	TCGA-B0-5097-01	TMPRSS11D	ENST00000509584.1,ENST00000545541.1,ENST00000508409.1	chr4	68708275:68708343:68719785:68719904:68749643:68749678,	68719786	68719904	68719845	68719845	Nonsense_Mutation	G	A	p.Q64*
KIRC	TCGA-B0-5097-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108202170:108202284:108202605:108202764:108203488:108203627,	108202606	108202764	108202714	108202714	Nonsense_Mutation	A	T	p.R2580*
KIRC	TCGA-B0-5098-01	PI4KB	ENST00000368874.4,ENST00000368875.2,ENST00000271657.5,ENST00000529142.1,ENST00000368873.1,ENST00000368872.1	chr1	151274319:151274443:151274669:151274774:151276016:151276126,	151274670	151274774	151274728	151274728	Nonsense_Mutation	G	A	p.R535*
KIRC	TCGA-B0-5098-01	CASS4	ENST00000371336.3,ENST00000360314.3	chr20	55025654:55025735:55026874:55028185:55033395:55033836,	55026875	55028185	55027381	55027381	Nonsense_Mutation	G	A	p.W383*
KIRC	TCGA-B0-5098-01	TP53I3	ENST00000417886.1	chr2	24303688:24303901:24305870:24306022:24307058:24307181,	24305871	24306022	24305872	24305872	Nonsense_Mutation	G	A	p.Q97*
KIRC	TCGA-B0-5098-01	TP53I3	ENST00000238721.4,ENST00000335934.4,ENST00000407482.1,ENST00000313482.4,ENST00000413037.1	chr2	24303688:24303901:24305754:24306022:24307058:24307181,	24305755	24306022	24305872	24305872	Nonsense_Mutation	G	A	p.Q97*
KIRC	TCGA-B0-5098-01	ATG4A	ENST00000372232.3,ENST00000394892.2,ENST00000457035.1,ENST00000372246.3,ENST00000372254.3	chrX	107381033:107381221:107381342:107381421:107393381:107393405,	107381343	107381421	107381402	107381402	Nonsense_Mutation	T	G	p.Y265*
KIRC	TCGA-B0-5098-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
KIRC	TCGA-B0-5099-01	P4HA2	ENST00000379104.2,ENST00000166534.4,ENST00000360568.3,ENST00000379086.1,ENST00000401867.1,ENST00000379100.2	chr5	131539774:131539845:131543400:131543577:131544830:131545024,	131543401	131543577	131543565	131543565	Nonsense_Mutation	G	A	p.Q306*
KIRC	TCGA-B0-5104-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19277893:19278029:19297340:19297442:19315936:19316153,	19297341	19297442	19297429	19297429	Nonsense_Mutation	C	A	p.E289*
KIRC	TCGA-B0-5106-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000589114.1,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34182636:34182731:34191914:34192058:34205473:34205712,	34191915	34192058	34192014	34192014	Nonsense_Mutation	A	T	p.K305*
KIRC	TCGA-B0-5107-01	PRKDC	ENST00000523565.1,ENST00000314191.2,ENST00000521331.1	chr8	48691564:48691654:48694722:48694815:48694938:48695152,	48694723	48694815	48694798	48694798	Nonsense_Mutation	C	T	p.W3804*
KIRC	TCGA-B0-5107-01	RSPO1	ENST00000373059.1,ENST00000401068.1,ENST00000401069.1,ENST00000356545.2	chr1	38077483:38078593:38079375:38079564:38079855:38080005,	38079376	38079564	38079542	38079542	Nonsense_Mutation	C	T	p.W153*
KIRC	TCGA-B0-5107-01	TXNDC12	ENST00000371626.4,ENST00000472624.1	chr1	52490181:52490251:52492946:52493020:52494249:52494302,	52492947	52493020	52492991	52492991	Nonsense_Mutation	C	A	p.E81*
KIRC	TCGA-B0-5109-01	FGFR3	ENST00000340107.4	chr4	1803561:1803752:1804640:1804791:1806056:1806247,	1804641	1804791	1804696	1804696	Nonsense_Mutation	C	A	p.S329*
KIRC	TCGA-B0-5110-01	OAF	ENST00000531220.1	chr11	120082008:120082218:120096453:120096504:120097524:120097705,	120096454	120096504	120096481	120096481	Nonsense_Mutation	G	T	p.E115*
KIRC	TCGA-B0-5115-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789*
KIRC	TCGA-B0-5115-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662984	52662984	Nonsense_Mutation	C	A	p.E425*
KIRC	TCGA-B0-5115-01	ACTN2	ENST00000492634.1,ENST00000542672.1,ENST00000366578.4	chr1	236889232:236889320:236890977:236891056:236894532:236894614,	236890978	236891056	236891015	236891015	Nonsense_Mutation	C	T	p.R192*
KIRC	TCGA-B0-5115-01	TRIM36	ENST00000513154.1	chr5	114482872:114483091:114499214:114499449:114505304:114505427,	114499215	114499449	114499350	114499350	Nonsense_Mutation	T	A	p.K43*
KIRC	TCGA-B0-5119-01	WDR25	ENST00000335290.6	chr14	100842775:100842832:100847246:100848083:100934357:100934505,100842769:100842841:100847246:100848083:100934357:100934505,100842877:100843041:100847246:100848083:100934357:100934505,	100847247	100848083	100847489	100847489	Nonsense_Mutation	T	A	p.Y76*
KIRC	TCGA-B0-5120-01	SERPINF2	ENST00000450523.2	chr17	1648468:1648507:1648626:1648699:1650312:1650456,	1648627	1648699	1648687	1648687	Nonsense_Mutation	C	T	p.Q55*
KIRC	TCGA-B0-5120-01	DDR1	ENST00000376568.3,ENST00000376569.3,ENST00000376567.2,ENST00000454612.2,ENST00000482873.2,ENST00000418800.2,ENST00000376575.3,ENST00000508312.1,ENST00000452441.1,ENST00000446312.1,ENST00000513240.1,ENST00000324771.8,ENST00000376570.4	chr6	30865849:30866084:30866664:30866814:30866932:30867018,	30866665	30866814	30866812	30866812	Nonsense_Mutation	C	T	p.Q867*
KIRC	TCGA-B0-5712-01	TRMT13	ENST00000370141.2	chr1	100609624:100609699:100613449:100613882:100614180:100616053,	100613450	100613882	100613725	100613725	Nonsense_Mutation	C	T	p.Q365*
KIRC	TCGA-B0-5712-01	CNDP2	ENST00000579847.1,ENST00000584581.1,ENST00000324262.4,ENST00000583695.1,ENST00000324301.8	chr18	72179682:72179767:72180793:72180954:72183462:72183627,	72180794	72180954	72180800	72180800	Nonsense_Mutation	T	A	p.L250*
KIRC	TCGA-B0-5712-01	MYRF	ENST00000278836.5	chr11	61548628:61548801:61549044:61549296:61550984:61551017,61548609:61548801:61549044:61549296:61550969:61551072,	61549045	61549296	61549236	61549236	Nonsense_Mutation	C	T	p.R986*
KIRC	TCGA-B0-5812-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188290	10188290	Nonsense_Mutation	C	T	p.Q145*
KIRC	TCGA-B0-5812-01	TCN2	ENST00000215838.3,ENST00000407817.3,ENST00000405742.3,ENST00000450638.1	chr22	31013316:31013482:31018954:31019070:31022446:31022992,	31018955	31019070	31018990	31018990	Nonsense_Mutation	T	A	p.L381*
KIRC	TCGA-B2-3924-01	PIBF1	ENST00000326291.6	chr13	73467921:73468087:73482668:73482819:73491213:73491304,	73482669	73482819	73482729	73482729	Nonsense_Mutation	C	T	p.Q517*
KIRC	TCGA-B2-4098-01	RPN1	ENST00000296255.3,ENST00000497289.1	chr3	128348793:128348986:128350790:128351000:128356641:128356948,	128350791	128351000	128350832	128350832	Nonsense_Mutation	T	A	p.R268*
KIRC	TCGA-B2-4101-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47127684:47127804:47129602:47129737:47139444:47139571,	47129603	47129737	47129722	47129722	Nonsense_Mutation	C	A	p.E1720*
KIRC	TCGA-B2-4101-01	TM4SF19	ENST00000273695.3,ENST00000446879.1	chr3	196051141:196051311:196053825:196053903:196054260:196054462,	196053826	196053903	196053866	196053866	Nonsense_Mutation	C	T	p.W80*
KIRC	TCGA-B4-5835-01	PPEF1	ENST00000544635.1,ENST00000379962.3,ENST00000361511.4,ENST00000359763.6	chrX	18807238:18807391:18822009:18822195:18824520:18824663,	18822010	18822195	18822154	18822154	Nonsense_Mutation	G	T	p.E404*
KIRC	TCGA-B4-5836-01	METTL4	ENST00000319888.6	chr18	2544193:2544285:2544651:2544758:2547353:2547528,2538451:2539144:2544651:2544758:2547353:2547528,	2544652	2544758	2544671	2544671	Nonsense_Mutation	T	A	p.K388*
KIRC	TCGA-B8-4153-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32260229:32260478:32369180:32369393:32446927:32447080,	32369181	32369393	32369298	32369298	Nonsense_Mutation	G	T	p.E111*
KIRC	TCGA-B8-4622-01	MYBL2	ENST00000396863.4,ENST00000217026.4	chr20	42341641:42341746:42343773:42343923:42344598:42344728,	42343774	42343923	42343846	42343846	Nonsense_Mutation	C	T	p.Q633*
KIRC	TCGA-B8-5158-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717762	89717762	Nonsense_Mutation	A	T	p.K263*
KIRC	TCGA-B8-5159-01	CCDC125	ENST00000511257.1,ENST00000396499.1,ENST00000396496.2	chr5	68578716:68578861:68581163:68581294:68588014:68588174,	68581164	68581294	68581285	68581285	Nonsense_Mutation	G	C	p.S370*
KIRC	TCGA-B8-5159-01	MRPS15	ENST00000373116.5	chr1	36923523:36923582:36926292:36926377:36926864:36926913,	36926293	36926377	36926350	36926350	Nonsense_Mutation	G	A	p.Q110*
KIRC	TCGA-B8-5164-01	PLD3	ENST00000492243.1	chr19	40872786:40872822:40873507:40873786:40875814:40875865,	40873508	40873786	40873738	40873738	Nonsense_Mutation	G	A	p.W127*
KIRC	TCGA-B8-5164-01	PLD3	ENST00000594908.1,ENST00000409735.4,ENST00000409587.1,ENST00000359274.5,ENST00000409281.1,ENST00000356508.5,ENST00000409419.1	chr19	40872786:40872822:40873602:40873786:40875814:40875865,	40873603	40873786	40873738	40873738	Nonsense_Mutation	G	A	p.W127*
KIRC	TCGA-BP-4760-01	GK5	ENST00000392993.2,ENST00000466685.3,ENST00000489085.1,ENST00000460544.1,ENST00000480757.1,ENST00000487672.1,ENST00000544571.1,ENST00000472759.1	chr3	141932367:141932443:141934440:141934534:141944150:141944258,	141934441	141934534	141934478	141934478	Nonsense_Mutation	C	T	p.W68*
KIRC	TCGA-BP-4795-01	CCDC74A	ENST00000295171.6	chr2	132287219:132287264:132288151:132288400:132289236:132289375,	132288152	132288400	132288265	132288265	Nonsense_Mutation	G	T	p.E239*
KIRC	TCGA-BP-4801-01	CIB2	ENST00000559645.1	chr15	78398195:78398276:78401576:78401851:78416046:78416081,	78401577	78401851	78401625	78401625	Nonsense_Mutation	C	A	p.E100*
KIRC	TCGA-BP-4801-01	CIB2	ENST00000557917.1	chr15	78398195:78398276:78401576:78401724:78423506:78423567,78398195:78398276:78401576:78401724:78416046:78416081,	78401577	78401724	78401625	78401625	Nonsense_Mutation	C	A	p.E100*
KIRC	TCGA-BP-4963-01	ZXDC	ENST00000389709.3	chr3	126158474:126158570:126160607:126160789:126178495:126178580,	126160608	126160789	126160625	126160625	Nonsense_Mutation	G	A	p.Q793*
KIRC	TCGA-BP-4964-01	DOCK5	ENST00000276440.7,ENST00000481100.1	chr8	25156459:25156617:25158091:25158173:25159840:25159970,	25158092	25158173	25158135	25158135	Nonsense_Mutation	G	T	p.E270*
KIRC	TCGA-BP-4965-01	PRKCD	ENST00000464818.1,ENST00000394729.2,ENST00000330452.3	chr3	53213592:53213792:53215222:53215283:53215459:53215622,	53215223	53215283	53215262	53215262	Nonsense_Mutation	C	T	p.Q119*
KIRC	TCGA-BP-4968-01	ELF2	ENST00000379550.1,ENST00000265495.4,ENST00000358635.3,ENST00000394235.2,ENST00000510408.1	chr4	139981754:139981828:139983018:139983211:139988837:139988924,	139983019	139983211	139983076	139983076	Nonsense_Mutation	C	T	p.W238*
KIRC	TCGA-BP-4970-01	COL19A1	ENST00000322773.4	chr6	70672717:70672762:70733518:70733572:70744136:70744190,	70733519	70733572	70733567	70733567	Nonsense_Mutation	G	T	p.E359*
KIRC	TCGA-BP-4976-01	ANAPC7	ENST00000455511.3,ENST00000471602.2,ENST00000450008.2	chr12	110813936:110814021:110815197:110815422:110819556:110819663,	110815198	110815422	110815266	110815266	Nonsense_Mutation	A	T	p.L464*
KIRC	TCGA-BP-4981-01	PHF20	ENST00000374000.4,ENST00000481202.1,ENST00000439301.1,ENST00000339089.6,ENST00000374012.3	chr20	34459571:34459751:34487291:34487570:34501170:34501238,	34487292	34487570	34487450	34487450	Nonsense_Mutation	A	T	p.K481*
KIRC	TCGA-BP-4982-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702612	52702612	Nonsense_Mutation	T	A	p.K96*
KIRC	TCGA-BP-4983-01	RABGAP1	ENST00000373647.4,ENST00000456584.1	chr9	125759537:125759640:125760875:125761045:125772632:125772807,	125760876	125761045	125760994	125760994	Nonsense_Mutation	G	A	p.W441*
KIRC	TCGA-BP-4991-01	CPB1	ENST00000468341.1,ENST00000282957.4,ENST00000491148.1,ENST00000462345.1,ENST00000465718.1	chr3	148545788:148545864:148552284:148552409:148558472:148558498,	148552285	148552409	148552315	148552315	Nonsense_Mutation	C	T	p.Q60*
KIRC	TCGA-BP-4992-01	CLUH	ENST00000572014.1,ENST00000575014.1,ENST00000574210.1,ENST00000574426.2,ENST00000570628.2,ENST00000435359.1,ENST00000538975.1	chr17	2595864:2595990:2596073:2596154:2597193:2597333,	2596074	2596154	2596082	2596082	Nonsense_Mutation	G	A	p.Q1063*
KIRC	TCGA-BP-4995-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277953	114277953	Nonsense_Mutation	C	T	p.Q2727*
KIRC	TCGA-BP-5006-01	METTL4	ENST00000576251.1	chr18	2538451:2539144:2547353:2547528:2552693:2552763,	2547354	2547528	2547514	2547514	Nonsense_Mutation	G	C	p.S305*
KIRC	TCGA-BP-5007-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000399200.2,ENST00000466493.1,ENST00000602465.1	chr10	70139249:70139278:70140988:70141156:70143554:70143671,	70140989	70141156	70140991	70140991	Nonsense_Mutation	G	A	p.Q404*
KIRC	TCGA-BP-5009-01	COL3A1	ENST00000304636.3	chr2	189871070:189871178:189871662:189871716:189872225:189872333,	189871663	189871716	189871705	189871705	Nonsense_Mutation	C	T	p.R1082*
KIRC	TCGA-BP-5168-01	PTPN13	ENST00000316707.6	chr4	87674161:87674218:87679412:87679502:87679830:87679938,87672179:87672277:87679412:87679502:87679830:87679938,87666118:87666281:87679412:87679502:87679830:87679938,	87679413	87679502	87679432	87679432	Nonsense_Mutation	G	A	p.W1081*
KIRC	TCGA-BP-5168-01	PITHD1	ENST00000246151.4	chr1	24105927:24105971:24106353:24106431:24112164:24112269,	24106354	24106431	24106410	24106410	Nonsense_Mutation	C	G	p.S100*
KIRC	TCGA-BP-5168-01	ACAD10	ENST00000508303.1,ENST00000392636.2	chr12	112165765:112165947:112167609:112167760:112171726:112171851,112159474:112159543:112167609:112167760:112171726:112171851,	112167610	112167760	112167663	112167663	Nonsense_Mutation	G	T	p.E464*
KIRC	TCGA-BP-5169-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125380	47125380	Nonsense_Mutation	C	A	p.E1964*
KIRC	TCGA-BP-5173-01	DIP2C	ENST00000280886.6,ENST00000381496.3	chr10	436679:436803:445048:445159:454865:454957,	445049	445159	445051	445051	Nonsense_Mutation	T	A	p.K420*
KIRC	TCGA-BP-5176-01	GOT1	ENST00000543866.1,ENST00000370508.5	chr10	101163225:101163391:101163480:101163631:101165512:101165617,	101163481	101163631	101163595	101163595	Nonsense_Mutation	G	A	p.Q227*
KIRC	TCGA-BP-5176-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1	chr9	139358871:139359014:139360413:139360588:139360715:139360836,	139360414	139360588	139360547	139360547	Nonsense_Mutation	G	T	p.Y1390*
KIRC	TCGA-BP-5180-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637711	52637711	Nonsense_Mutation	G	A	p.Q837*
KIRC	TCGA-BP-5180-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70517037:70517167:70533269:70533486:70536176:70536432,	70533270	70533486	70533276	70533276	Nonsense_Mutation	C	T	p.Q462*
KIRC	TCGA-BP-5182-01	MZB1	ENST00000302125.8	chr5	138723709:138723820:138724149:138724274:138725015:138725109,138723709:138723820:138724149:138724274:138725368:138725537,	138724150	138724274	138724269	138724269	Nonsense_Mutation	C	T	p.W61*
KIRC	TCGA-BP-5182-01	MZB1	ENST00000417694.2	chr5	138723709:138723820:138724149:138724356:138725368:138725537,	138724150	138724356	138724269	138724269	Nonsense_Mutation	C	T	p.W61*
KIRC	TCGA-BP-5182-01	ETNPPL	ENST00000510706.1	chr4	109677573:109677648:109681343:109681462:109683998:109684085,109680904:109681064:109681343:109681462:109683976:109684120,	109681344	109681462	109681436	109681436	Nonsense_Mutation	G	T	p.S28*
KIRC	TCGA-BP-5183-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331781	20331781	Nonsense_Mutation	G	A	p.Q221*
KIRC	TCGA-BP-5185-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188207	10188207	Nonsense_Mutation	G	A	p.W117*
KIRC	TCGA-BP-5187-01	ATG7	ENST00000451513.1,ENST00000354449.3,ENST00000423116.1,ENST00000446450.2,ENST00000451830.1,ENST00000354956.5	chr3	11340835:11340890:11348416:11348534:11350457:11350535,	11348417	11348534	11348441	11348441	Nonsense_Mutation	C	A	p.C80*
KIRC	TCGA-BP-5198-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412360	77412360	Nonsense_Mutation	A	T	p.C638*
KIRC	TCGA-BP-5198-01	CRTAP	ENST00000320954.6,ENST00000485310.1	chr3	33161835:33161985:33165899:33166071:33171430:33171559,	33165900	33166071	33165912	33165912	Nonsense_Mutation	C	T	p.R212*
KIRC	TCGA-BP-5199-01	FOXRED1	ENST00000532101.1,ENST00000534315.1,ENST00000263578.5,ENST00000532125.1	chr11	126141331:126141552:126142863:126142974:126143230:126143349,	126142864	126142974	126142905	126142905	Nonsense_Mutation	T	A	p.C116*
KIRC	TCGA-CJ-4882-01	TMEM130	ENST00000339375.4,ENST00000546258.1,ENST00000450876.1,ENST00000416379.2	chr7	98453639:98453806:98457801:98457961:98467399:98467489,98453639:98453806:98457801:98457961:98460717:98461023,	98457802	98457961	98457932	98457932	Nonsense_Mutation	G	A	p.Q57*
KIRC	TCGA-CJ-4901-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30064321:30064435:30067814:30067937:30069257:30069475,	30067815	30067937	30067836	30067836	Nonsense_Mutation	C	T	p.R341*
KIRC	TCGA-CJ-4902-01	P2RX2	ENST00000350048.5,ENST00000449132.2	chr12	133195426:133195575:133196024:133196160:133196429:133196505,	133196025	133196160	133196058	133196058	Nonsense_Mutation	G	T	p.E47*
KIRC	TCGA-CJ-4902-01	MEIS1	ENST00000490726.1,ENST00000272369.9,ENST00000398506.2,ENST00000407092.2,ENST00000488550.1,ENST00000444274.2,ENST00000560281.2	chr2	66666452:66666803:66666974:66667116:66667693:66667744,66664938:66665095:66666974:66667116:66667693:66667744,	66666975	66667116	66667009	66667009	Nonsense_Mutation	G	T	p.E92*
KIRC	TCGA-CJ-4902-01	TP53I3	ENST00000313482.4	chr2	24305870:24306022:24307058:24307201:24307600:24307655,	24307059	24307201	24307100	24307100	Nonsense_Mutation	T	A	p.K33*
KIRC	TCGA-CJ-4904-01	GDF11	ENST00000546799.1	chr12	56137182:56137545:56142369:56142767:56143285:56143667,	56142370	56142767	56142619	56142619	Nonsense_Mutation	C	G	p.S232*
KIRC	TCGA-CJ-4904-01	ANKS1B	ENST00000551560.1,ENST00000333732.7,ENST00000549493.2,ENST00000546364.3	chr12	99194870:99194903:99222951:99223131:99225806:99225914,99201621:99201693:99222951:99223131:99225806:99225914,	99222952	99223131	99223072	99223072	Nonsense_Mutation	G	T	p.Y982*
KIRC	TCGA-CJ-4907-01	DTNBP1	ENST00000515875.1,ENST00000506844.1,ENST00000338950.5,ENST00000344537.5,ENST00000511762.2,ENST00000510395.1,ENST00000355917.3,ENST00000513680.1	chr6	15615497:15615630:15627573:15627706:15637974:15638035,	15627574	15627706	15627643	15627643	Nonsense_Mutation	C	A	p.E96*
KIRC	TCGA-CJ-4907-01	PAH	ENST00000549247.1,ENST00000551114.1,ENST00000307000.2,ENST00000553106.1	chr12	103238113:103238209:103240672:103240729:103245464:103245534,	103240673	103240729	103240687	103240687	Nonsense_Mutation	C	A	p.E319*
KIRC	TCGA-CJ-4912-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440753	27440753	Nonsense_Mutation	G	C	p.S126*
KIRC	TCGA-CJ-4918-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10626618:10626732:10627586:10627751:10628607:10628758,	10627587	10627751	10627597	10627597	Nonsense_Mutation	G	T	p.Y625*
KIRC	TCGA-CJ-4918-01	EML4	ENST00000402711.2,ENST00000409040.1,ENST00000401738.3	chr2	42396600:42396776:42472644:42472827:42483640:42483770,	42472645	42472827	42472705	42472705	Nonsense_Mutation	C	A	p.S29*
KIRC	TCGA-CJ-4920-01	MFN1	ENST00000480636.1	chr3	179095131:179095236:179096128:179096602:179103356:179103509,	179096129	179096602	179096586	179096586	Nonsense_Mutation	C	A	p.S549*
KIRC	TCGA-CJ-6027-01	NEBL	ENST00000377122.4	chr10	21120401:21120512:21124441:21124552:21129667:21129778,	21124442	21124552	21124510	21124510	Nonsense_Mutation	C	A	p.G461*
KIRC	TCGA-CJ-6027-01	LAG3	ENST00000203629.2	chr12	6886429:6886672:6886956:6887087:6887409:6887619,	6886957	6887087	6886962	6886962	Nonsense_Mutation	C	T	p.Q436*
KIRC	TCGA-CJ-6028-01	NRBP2	ENST00000529747.1,ENST00000533093.1,ENST00000327830.5,ENST00000532940.1,ENST00000442628.2,ENST00000533846.1	chr8	144919796:144919927:144920851:144920947:144921054:144921110,	144920852	144920947	144920929	144920929	Nonsense_Mutation	G	A	p.Q255*
KIRC	TCGA-CJ-6030-01	TRIP12	ENST00000459841.1,ENST00000283943.5,ENST00000389045.3,ENST00000418123.1,ENST00000389044.4	chr2	230638812:230638977:230642030:230642195:230643148:230643181,	230642031	230642195	230642131	230642131	Nonsense_Mutation	G	T	p.S1735*
KIRC	TCGA-CJ-6031-01	ATG7	ENST00000354449.3,ENST00000424071.1,ENST00000446450.2,ENST00000354956.5	chr3	11383673:11383753:11389350:11389509:11399891:11400084,	11389351	11389509	11389435	11389435	Nonsense_Mutation	G	T	p.E404*
KIRC	TCGA-CJ-6032-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094308	27094308	Nonsense_Mutation	G	T	p.E1006*
KIRC	TCGA-CW-5580-01	ATP10A	ENST00000356865.6	chr15	25953343:25953447:25958820:25959388:25961876:25962071,	25958821	25959388	25959134	25959134	Nonsense_Mutation	C	T	p.W677*
KIRC	TCGA-CW-5580-01	TTC24	ENST00000368237.3,ENST00000368236.3	chr1	156552833:156552962:156553129:156553242:156553588:156553687,	156553130	156553242	156553240	156553240	Nonsense_Mutation	C	T	p.Q384*
KIRC	TCGA-CW-6087-01	CPT1A	ENST00000540367.1,ENST00000376618.2,ENST00000539743.1,ENST00000265641.5	chr11	68571467:68571569:68574934:68575106:68579904:68580044,	68574935	68575106	68575043	68575043	Nonsense_Mutation	C	T	p.W115*
KIRC	TCGA-CW-6093-01	EXD3	ENST00000342129.4,ENST00000340951.4,ENST00000490886.1	chr9	140248790:140248829:140249151:140249225:140250719:140250820,	140249152	140249225	140249170	140249170	Nonsense_Mutation	G	T	p.C271*
KIRC	TCGA-CW-6093-01	EXD3	ENST00000491734.2,ENST00000472958.1	chr9	140248790:140248829:140249018:140249225:140250719:140250820,	140249019	140249225	140249170	140249170	Nonsense_Mutation	G	T	p.C271*
KIRC	TCGA-CW-6093-01	ZNF202	ENST00000530393.1,ENST00000529691.1,ENST00000336139.4	chr11	123597564:123597699:123598183:123598303:123598840:123598970,	123598184	123598303	123598248	123598248	Nonsense_Mutation	C	T	p.W296*
KIRC	TCGA-CZ-4853-01	KPNA4	ENST00000334256.4	chr3	160225894:160226057:160227587:160227659:160231864:160231969,	160227588	160227659	160227602	160227602	Nonsense_Mutation	C	A	p.G399*
KIRC	TCGA-CZ-4853-01	RIC8B	ENST00000470628.2,ENST00000392839.2,ENST00000462949.1,ENST00000392837.4	chr12	107177774:107177822:107208473:107209082:107219503:107219598,	107208474	107209082	107209026	107209026	Nonsense_Mutation	G	T	p.E229*
KIRC	TCGA-CZ-4856-01	DNAH9	ENST00000262442.4,ENST00000454412.2	chr17	11584039:11584206:11592882:11593753:11597184:11597315,	11592883	11593753	11593688	11593688	Nonsense_Mutation	C	T	p.R1517*
KIRC	TCGA-CZ-5982-01	FBL	ENST00000601274.1,ENST00000598417.1,ENST00000599134.1,ENST00000597634.1,ENST00000599159.1,ENST00000597224.1,ENST00000221801.3,ENST00000594309.1	chr19	40329791:40329845:40330872:40330967:40331053:40331155,	40330873	40330967	40330954	40330954	Nonsense_Mutation	A	T	p.C99*
KIRC	TCGA-CZ-5987-01	PRRC2A	ENST00000376033.2,ENST00000469577.1,ENST00000376007.4	chr6	31593236:31593388:31593568:31593648:31593796:31593939,	31593569	31593648	31593611	31593611	Nonsense_Mutation	C	T	p.Q268*
KIRC	TCGA-EU-5904-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105254	168105254	Nonsense_Mutation	C	A	p.S2451*
KIRC	TCGA-EU-5905-01	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248528	141248528	Nonsense_Mutation	G	T	p.S170*
KIRC	TCGA-EU-5905-01	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785764	28785764	Nonsense_Mutation	C	A	p.S62*
KIRC	TCGA-EU-5907-01	KRT23	ENST00000209718.3,ENST00000582754.1,ENST00000436344.3	chr17	39084697:39084859:39086191:39086348:39087624:39087707,	39086192	39086348	39086293	39086293	Nonsense_Mutation	G	A	p.R179*
KIRC	TCGA-EU-5907-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1	chr17	67273781:67273983:67280093:67280213:67282038:67282178,	67280094	67280213	67280186	67280186	Nonsense_Mutation	G	C	p.S767*
KIRP	TCGA-Y8-A894-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49947551:49948317:49948958:49949444:49950652:49950792,	49948959	49949444	49949382	49949382	Nonsense_Mutation	C	A	p.E161X
KIRP	TCGA-Y8-A894-01	ITK	ENST00000422843.3,ENST00000519402.1	chr5	156670632:156670804:156671271:156671488:156672735:156672800,	156671272	156671488	156671455	156671455	Nonsense_Mutation	C	A	p.Y472X
KIRP	TCGA-2Z-A9JQ-01	MAP3K19	ENST00000414343.1	chr2	135763090:135763101:135779284:135779400:135797932:135798072,	135779285	135779400	135779307	135779307	Nonsense_Mutation	A	T	p.L39X
KIRP	TCGA-MH-A854-01	HNRNPUL1	ENST00000595018.1	chr19	41768434:41768487:41774127:41774250:41777986:41778140,	41774128	41774250	41774184	41774184	Nonsense_Mutation	C	T	p.Q118X
KIRP	TCGA-A4-7585-01	KIAA1109	ENST00000495260.1,ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123151085:123151366:123155927:123156178:123159246:123159505,	123155928	123156178	123156097	123156097	Nonsense_Mutation	G	T	p.E1165X
KIRP	TCGA-A4-A5Y1-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671593	186671593	Nonsense_Mutation	C	T	p.Q5943X
KIRP	TCGA-A4-A5Y1-01	VPS13C	ENST00000261517.5,ENST00000249837.3	chr15	62148484:62148608:62155638:62155727:62160857:62160972,	62155639	62155727	62155703	62155703	Nonsense_Mutation	C	A	p.E3630X
KIRP	TCGA-A4-A5Y1-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220519	29220519	Nonsense_Mutation	A	T	p.K1550X
KIRP	TCGA-BQ-5878-01	OASL	ENST00000257570.5	chr12	121461792:121461940:121465378:121465620:121469244:121469397,	121465379	121465620	121465530	121465530	Nonsense_Mutation	C	A	p.E250X
KIRP	TCGA-B3-3925-01	DEPDC5	ENST00000473802.1,ENST00000266091.3,ENST00000400242.3,ENST00000469974.1,ENST00000535622.1,ENST00000382105.2,ENST00000382111.2,ENST00000400249.2,ENST00000536766.1,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32188730:32188803:32193585:32193689:32194567:32194642,	32193586	32193689	32193641	32193641	Nonsense_Mutation	A	T	p.K275X
KIRP	TCGA-IA-A83T-01	CEP128	ENST00000281129.3,ENST00000555265.1	chr14	81259103:81259454:81297486:81297638:81302548:81302680,	81297487	81297638	81297497	81297497	Nonsense_Mutation	G	T	p.S400X
KIRP	TCGA-GL-A9DC-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132774	49132774	Nonsense_Mutation	G	A	p.W570X
KIRP	TCGA-BQ-7062-01	PPP1R16B	ENST00000299824.1,ENST00000373331.2	chr20	37536448:37536578:37536670:37536836:37546799:37551667,	37536671	37536836	37536822	37536822	Nonsense_Mutation	G	T	p.E394X
KIRP	TCGA-F9-A8NY-01	MAN2C1	ENST00000565683.1,ENST00000566253.1,ENST00000563441.1,ENST00000569482.1,ENST00000563622.1,ENST00000566634.1,ENST00000563058.1,ENST00000267978.5,ENST00000562228.1	chr15	75653438:75653532:75653626:75653722:75653944:75654061,	75653627	75653722	75653705	75653705	Nonsense_Mutation	C	T	p.W412X
KIRP	TCGA-F9-A8NY-01	TLE6	ENST00000468176.3,ENST00000452088.1,ENST00000478073.2,ENST00000246112.4	chr19	2986980:2987236:2987353:2987370:2987721:2987788,	2987354	2987370	2987356	2987356	Nonsense_Mutation	C	T	p.Q182X
KIRP	TCGA-UZ-A9PR-01	ATAD3B	ENST00000485748.1,ENST00000308647.7,ENST00000472194.2	chr1	1425636:1425804:1425942:1426051:1430864:1431581,	1425943	1426051	1426049	1426049	Nonsense_Mutation	C	T	p.Q538X
KIRP	TCGA-UZ-A9PR-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305967	27305967	Nonsense_Mutation	C	T	p.Q510X
KIRP	TCGA-BQ-5893-01	CSMD3	ENST00000343508.3,ENST00000534172.1,ENST00000297405.5,ENST00000339701.3,ENST00000455883.2,ENST00000352409.3	chr8	113246593:113246706:113249418:113249577:113253948:113254014,	113249419	113249577	113249531	113249531	Nonsense_Mutation	G	T	p.Y3505X
KIRP	TCGA-WN-AB4C-01	WDTC1	ENST00000491239.2	chr1	27627716:27627952:27630111:27631684:27632676:27632941,	27630112	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q587X
KIRP	TCGA-WN-AB4C-01	WDTC1	ENST00000361771.3,ENST00000319394.3	chr1	27630111:27630286:27631491:27631684:27632676:27632763,	27631492	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q587X
KIRP	TCGA-WN-AB4C-01	WDTC1	ENST00000447062.2	chr1	27630111:27630286:27631549:27631684:27632676:27632763,	27631550	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q587X
KIRP	TCGA-WN-AB4C-01	HSDL2	ENST00000488101.1,ENST00000262542.7,ENST00000398805.3	chr9	115171186:115171301:115179120:115179224:115181139:115181238,	115179121	115179224	115179215	115179215	Nonsense_Mutation	C	T	p.Q164X
KIRP	TCGA-GL-A9DE-01	RRM1	ENST00000423050.2,ENST00000537197.1,ENST00000533349.1,ENST00000531591.1,ENST00000529109.1,ENST00000534285.1,ENST00000532170.1,ENST00000533495.1,ENST00000300738.5	chr11	4143370:4143450:4144412:4144614:4147913:4148047,	4144413	4144614	4144483	4144483	Nonsense_Mutation	C	T	p.Q397X
KIRP	TCGA-DW-7834-01	PEF1	ENST00000440872.2	chr1	32100434:32100544:32100822:32101123:32110441:32110474,	32100823	32101123	32100955	32100955	Nonsense_Mutation	C	A	p.G65X
KIRP	TCGA-UZ-A9PX-01	BCL2L13	ENST00000538149.1	chr22	18165979:18166087:18185008:18185152:18209442:18210300,18171839:18171908:18185008:18185152:18209442:18209734,18178906:18178976:18185008:18185152:18209442:18209734,18138477:18138598:18185008:18185152:18209442:18210300,	18185009	18185152	18185096	18185096	Nonsense_Mutation	G	A	p.W106X
KIRP	TCGA-A4-A7UZ-01	ATP9B	ENST00000587878.1	chr18	76966976:76967012:77013380:77013541:77037053:77037196,	77013381	77013541	77013436	77013436	Nonsense_Mutation	T	G	p.L388X
KIRP	TCGA-4A-A93X-01	PAXIP1	ENST00000473219.1,ENST00000464717.1,ENST00000404141.1,ENST00000397192.1,ENST00000457196.1	chr7	154738074:154738135:154738221:154738297:154738388:154738523,	154738222	154738297	154738247	154738247	Nonsense_Mutation	G	T	p.C1036X
KIRP	TCGA-4A-A93X-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123202413:123202506:123204998:123205173:123210181:123210321,	123204999	123205173	123205104	123205104	Nonsense_Mutation	C	T	p.Q822X
KIRP	TCGA-A4-8517-01	UBE3C	ENST00000348165.5	chr7	156961741:156961816:156962997:156963144:156967612:156967728,	156962998	156963144	156963038	156963038	Nonsense_Mutation	T	A	p.L79X
KIRP	TCGA-A4-A6HP-01	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755929	153755929	Nonsense_Mutation	C	T	p.R221X
KIRP	TCGA-B9-5155-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220439	1220439	Nonsense_Mutation	A	T	p.K178X
KIRP	TCGA-A4-A4ZT-01	LIX1	ENST00000274382.4	chr5	96440893:96440989:96443063:96443204:96460169:96460333,	96443064	96443204	96443096	96443096	Nonsense_Mutation	C	A	p.E119X
KIRP	TCGA-G7-A8LD-01	SMARCA1	ENST00000371123.1,ENST00000371122.4	chrX	128650307:128650474:128652337:128652424:128657173:128657223,	128652338	128652424	128652406	128652406	Nonsense_Mutation	G	A	p.Q65X
KIRP	TCGA-UZ-A9PP-01	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42482302:42482478:42482757:42482950:42485653:42485788,	42482758	42482950	42482815	42482815	Nonsense_Mutation	T	A	p.K538X
KIRP	TCGA-SX-A7SN-01	CLTA	ENST00000540080.1	chr9	36198975:36199093:36204064:36204176:36211599:36211781,36191161:36191270:36204064:36204176:36211599:36211781,	36204065	36204176	36204095	36204095	Nonsense_Mutation	G	A	p.W135X
KIRP	TCGA-SX-A7SN-01	ENTPD8	ENST00000461823.1,ENST00000371506.2,ENST00000472938.1,ENST00000493135.1,ENST00000344119.2	chr9	140331610:140331761:140332418:140332536:140332611:140332698,	140332419	140332536	140332422	140332422	Nonsense_Mutation	C	A	p.E81X
KIRP	TCGA-UZ-A9PL-01	BTRC	ENST00000370183.2	chr10	103113938:103113985:103190101:103190209:103239124:103239214,103114290:103114366:103190101:103190209:103221737:103221815,	103190102	103190209	103190124	103190124	Nonsense_Mutation	G	A	p.W24X
KIRP	TCGA-UN-AAZ9-01	PER1	ENST00000585284.1,ENST00000581082.1,ENST00000582719.1,ENST00000317276.4	chr17	8044550:8044658:8045122:8045273:8045586:8045776,	8045123	8045273	8045218	8045218	Nonsense_Mutation	G	A	p.Q1169X
KIRP	TCGA-B9-4116-01	SCYL1	ENST00000279270.6,ENST00000525364.1	chr11	65305301:65305351:65305437:65305653:65305740:65305795,65305301:65305351:65305437:65305653:65305912:65306146,	65305438	65305653	65305494	65305494	Nonsense_Mutation	G	A	p.W696X
KIRP	TCGA-B9-4116-01	SCYL1	ENST00000533862.1	chr11	65305301:65305351:65305474:65305653:65305740:65305795,	65305475	65305653	65305494	65305494	Nonsense_Mutation	G	A	p.W696X
KIRP	TCGA-SX-A7SS-01	SLC45A2	ENST00000296589.4,ENST00000510600.1,ENST00000382102.3,ENST00000342059.3	chr5	33951658:33951782:33954465:33954609:33963795:33964121,	33954466	33954609	33954590	33954590	Nonsense_Mutation	A	T	p.L303X
KIRP	TCGA-DZ-6133-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000430577.2,ENST00000436828.1,ENST00000395851.1,ENST00000585296.1,ENST00000268712.3	chr17	16075176:16075309:16089867:16090001:16097775:16097925,	16089868	16090001	16089949	16089949	Nonsense_Mutation	G	C	p.S54X
KIRP	TCGA-DZ-6133-01	CASC3	ENST00000418132.3,ENST00000474190.1,ENST00000264645.7	chr17	38318254:38318406:38318977:38319154:38319733:38319855,	38318978	38319154	38319005	38319005	Nonsense_Mutation	G	A	p.W212X
KIRP	TCGA-HE-7129-01	SLC35D2	ENST00000253270.7	chr9	99098998:99099066:99106185:99106278:99107580:99107683,	99106186	99106278	99106263	99106263	Nonsense_Mutation	C	A	p.G203X
KIRP	TCGA-HE-7129-01	STAT5A	ENST00000588868.1,ENST00000587646.1,ENST00000590949.1,ENST00000546010.2,ENST00000591556.1,ENST00000468096.1,ENST00000345506.4	chr17	40458258:40458465:40459419:40459514:40459610:40459741,	40459420	40459514	40459443	40459443	Nonsense_Mutation	C	A	p.Y568X
KIRP	TCGA-A4-7828-01	ISOC2	ENST00000438389.2	chr19	55966368:55966473:55966626:55966697:55967715:55967856,	55966627	55966697	55966664	55966664	Nonsense_Mutation	G	A	p.Q144X
KIRP	TCGA-5P-A9JU-01	GREB1L	ENST00000269218.6	chr18	19024184:19024370:19030983:19031112:19032043:19032178,	19030984	19031112	19031043	19031043	Nonsense_Mutation	G	T	p.E594X
KIRP	TCGA-5P-A9JU-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112065566	112065566	Nonsense_Mutation	A	T	p.Y263X
KIRP	TCGA-KV-A74V-01	LYAR	ENST00000343470.4,ENST00000452476.1	chr4	4269430:4269750:4270256:4270342:4275309:4275396,	4270257	4270342	4270271	4270271	Nonsense_Mutation	T	A	p.K331X
KIRP	TCGA-GL-A4EM-01	PANX1	ENST00000436171.2,ENST00000227638.3	chr11	93886656:93886796:93911534:93911758:93912767:93913423,	93911535	93911758	93911576	93911576	Nonsense_Mutation	C	G	p.Y121X
KIRP	TCGA-P4-A5E8-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748237	43748237	Nonsense_Mutation	G	A	p.Q857X
KIRP	TCGA-DW-7840-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470014	161470014	Nonsense_Mutation	C	A	p.S237X
KIRP	TCGA-SX-A7SR-01	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127916020	127916020	Nonsense_Mutation	A	T	p.L191X
KIRP	TCGA-A4-7915-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877225	38877225	Nonsense_Mutation	G	A	p.W120X
KIRP	TCGA-B1-5398-01	CPEB4	ENST00000334035.5	chr5	173359452:173359503:173370028:173370052:173371969:173372095,173337525:173337607:173370028:173370052:173371969:173372095,	173370029	173370052	173370039	173370039	Nonsense_Mutation	T	G	p.Y423X
KIRP	TCGA-B1-5398-01	KIF27	ENST00000297814.2	chr9	86482598:86482775:86485433:86485547:86495211:86495409,	86485434	86485547	86485505	86485505	Nonsense_Mutation	T	A	p.K896X
KIRP	TCGA-B1-5398-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75516130	75516130	Nonsense_Mutation	T	A	p.K77X
KIRP	TCGA-GL-A9DD-01	SENP5	ENST00000323460.5	chr3	196594815:196594944:196612021:196613565:196626536:196626642,	196612022	196613565	196613001	196613001	Nonsense_Mutation	A	T	p.K317X
KIRP	TCGA-UZ-A9PO-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000577827.1,ENST00000400060.4	chr18	8379164:8379338:8380293:8380425:8384558:8384684,	8380294	8380425	8380303	8380303	Nonsense_Mutation	C	T	p.Q1266X
KIRP	TCGA-SX-A71S-01	TRIM33	ENST00000358465.2,ENST00000369543.2	chr1	115005725:115005858:115006033:115006178:115006891:115007010,	115006034	115006178	115006036	115006036	Nonsense_Mutation	G	T	p.S263X
KIRP	TCGA-SX-A71S-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19078173:19078300:19080476:19080670:19082870:19083041,	19080477	19080670	19080609	19080609	Nonsense_Mutation	A	T	p.L311X
KIRP	TCGA-SX-A71S-01	DNAJA3	ENST00000262375.6,ENST00000576180.1	chr16	4500403:4500498:4504811:4504928:4505546:4505952,	4504812	4504928	4504895	4504895	Nonsense_Mutation	A	T	p.K475X
KIRP	TCGA-2K-A9WE-01	IKZF3	ENST00000351680.3,ENST00000348427.3,ENST00000377945.3,ENST00000439016.2,ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000346243.3,ENST00000467757.1	chr17	37948925:37949186:37985639:37985741:37988350:37988404,	37985640	37985741	37985676	37985676	Nonsense_Mutation	C	A	p.G43X
KIRP	TCGA-BQ-5884-01	SOS1	ENST00000428721.2,ENST00000395038.2,ENST00000451331.1,ENST00000426016.1,ENST00000402219.2	chr2	39283873:39284007:39285813:39285945:39294768:39294894,	39285814	39285945	39285904	39285904	Nonsense_Mutation	C	T	p.W85X
KIRP	TCGA-SX-A71W-01	GCNT2	ENST00000495262.1	chr6	10527706:10527893:10528863:10530069:10621583:10621655,	10528864	10530069	10529942	10529942	Nonsense_Mutation	C	G	p.Y266X
KIRP	TCGA-G7-6789-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
KIRP	TCGA-G7-6789-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
KIRP	TCGA-BQ-7053-01	CNTNAP3	ENST00000323947.7,ENST00000443583.2	chr9	39132928:39133129:39140515:39140635:39165929:39166073,	39140516	39140635	39140600	39140600	Nonsense_Mutation	G	A	p.R598X
KIRP	TCGA-BQ-7053-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73744921:73745126:73746191:73746349:73746760:73746871,	73746192	73746349	73746316	73746316	Nonsense_Mutation	G	A	p.W1147X
KIRP	TCGA-BQ-7045-01	GOLGA2	ENST00000458730.1	chr9	131028248:131028299:131028565:131028604:131029472:131029538,131028248:131028299:131028565:131028604:131029736:131029796,	131028566	131028604	131028577	131028577	Nonsense_Mutation	G	A	p.Q197X
KIRP	TCGA-MH-A55W-01	LIPI	ENST00000536861.1	chr21	15558281:15558390:15561354:15561740:15583120:15583166,	15561355	15561740	15561570	15561570	Nonsense_Mutation	G	A	p.Q94X
KIRP	TCGA-5P-A9K3-01	MOV10L1	ENST00000434497.1	chr22	50553542:50553675:50555585:50555780:50563820:50563998,	50555586	50555780	50555698	50555698	Nonsense_Mutation	G	T	p.E458X
KIRP	TCGA-P4-A5E6-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813548	214813548	Nonsense_Mutation	A	T	p.K623X
KIRP	TCGA-BQ-7048-01	RNF157	ENST00000269391.6,ENST00000319945.6	chr17	74157642:74157728:74157923:74158083:74158632:74158704,	74157924	74158083	74158077	74158077	Nonsense_Mutation	C	A	p.E267X
KIRP	TCGA-B3-4104-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579415	7579415	Nonsense_Mutation	C	T	p.W91X
KIRP	TCGA-B3-4104-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123171376:123171473:123176418:123176495:123179013:123179058,	123176419	123176495	123176469	123176469	Nonsense_Mutation	C	T	p.R146X
KIRP	TCGA-BQ-5877-01	ORC2	ENST00000464147.1,ENST00000234296.2	chr2	201785781:201785862:201790558:201790655:201791490:201791623,	201790559	201790655	201790562	201790562	Nonsense_Mutation	C	A	p.E382X
KIRP	TCGA-BQ-5877-01	DSP	ENST00000418664.2,ENST00000506617.1,ENST00000379802.3	chr6	7559518:7559633:7562884:7563013:7563968:7564019,	7562885	7563013	7562980	7562980	Nonsense_Mutation	T	A	p.Y231X
KIRP	TCGA-Y8-A895-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	92979212:92979527:93029198:93029294:93070863:93070959,	93029199	93029294	93029241	93029241	Nonsense_Mutation	A	C	p.Y692X
KIRP	TCGA-Y8-A895-01	SLCO1A2	ENST00000463718.1,ENST00000452078.1,ENST00000413682.1,ENST00000390670.3,ENST00000307378.6,ENST00000480394.1	chr12	21457456:21457507:21459815:21459922:21467482:21467615,	21459816	21459922	21459852	21459852	Nonsense_Mutation	C	A	p.G136X
KIRP	TCGA-BQ-5882-01	FAM49B	ENST00000520204.1,ENST00000401979.2,ENST00000519824.2,ENST00000519142.1,ENST00000518283.1,ENST00000519020.1,ENST00000523993.1,ENST00000519540.1,ENST00000523288.1,ENST00000522746.1,ENST00000517654.1,ENST00000520254.1,ENST00000523509.1,ENST00000519110.1	chr8	130874571:130874580:130883620:130883742:130915557:130915596,130867943:130867993:130883620:130883742:130915557:130915596,130874571:130874580:130883620:130883742:130951853:130951940,130874571:130874580:130883620:130883742:130891634:130891717,	130883621	130883742	130883632	130883632	Nonsense_Mutation	C	A	p.E62X
KIRP	TCGA-BQ-5882-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39591636:39591681:39596462:39596549:39597188:39597267,	39596463	39596549	39596542	39596542	Nonsense_Mutation	A	T	p.Y217X
KIRP	TCGA-BQ-5882-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288035	74288035	Nonsense_Mutation	G	A	p.Q759X
KIRP	TCGA-HE-A5NI-01	PRKCD	ENST00000394729.2,ENST00000330452.3	chr3	53219619:53219716:53219942:53220043:53220182:53220293,	53219943	53220043	53220041	53220041	Nonsense_Mutation	A	T	p.K362X
KIRP	TCGA-HE-A5NI-01	UACA	ENST00000539319.1	chr15	70987355:70987444:70991865:70991999:71055668:71055769,	70991866	70991999	70991969	70991969	Nonsense_Mutation	G	A	p.R37X
KIRP	TCGA-P4-A5EB-01	RNF216	ENST00000425013.2	chr7	5778906:5778983:5780603:5781275:5792476:5792610,	5780604	5781275	5781127	5781127	Nonsense_Mutation	G	C	p.S174X
KIRP	TCGA-P4-A5EB-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5781127	5781127	Nonsense_Mutation	G	C	p.S174X
KIRP	TCGA-P4-A5EB-01	OPTN	ENST00000424614.1,ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000263036.5	chr10	13158267:13158340:13160887:13161040:13164384:13164487,	13160888	13161040	13160994	13160994	Nonsense_Mutation	C	T	p.Q245X
KIRP	TCGA-P4-A5EB-01	OPTN	ENST00000378764.2,ENST00000378752.3	chr10	13158267:13158340:13160905:13161040:13164384:13164487,	13160906	13161040	13160994	13160994	Nonsense_Mutation	C	T	p.Q245X
KIRP	TCGA-P4-A5EB-01	KEAP1	ENST00000585845.1	chr19	10602935:10602938:10610070:10610262:10613916:10614234,	10610071	10610262	10610178	10610178	Nonsense_Mutation	G	A	p.Q178X
KIRP	TCGA-P4-A5EB-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610178	10610178	Nonsense_Mutation	G	A	p.Q178X
KIRP	TCGA-J7-A8I2-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472979	70472979	Nonsense_Mutation	G	A	p.R43X
KIRP	TCGA-HE-A5NK-01	DHX35	ENST00000373325.2,ENST00000484417.1,ENST00000252011.3,ENST00000373323.4	chr20	37650515:37650578:37653872:37654002:37657060:37657142,37652332:37652410:37653872:37654002:37657060:37657142,	37653873	37654002	37653978	37653978	Nonsense_Mutation	C	T	p.Q593X
KIRP	TCGA-IZ-8195-01	USP39	ENST00000409766.3	chr2	85872070:85872206:85875052:85875139:85875883:85875976,85872936:85873022:85875052:85875139:85875883:85875976,85868177:85868241:85875052:85875139:85875883:85875976,	85875053	85875139	85875075	85875075	Nonsense_Mutation	T	G	p.L529X
KIRP	TCGA-IZ-8195-01	AHI1	ENST00000265602.6,ENST00000417892.2,ENST00000475846.2,ENST00000367800.4,ENST00000457866.2,ENST00000367799.2	chr6	135639656:135639754:135644299:135644462:135679269:135679325,	135644300	135644462	135644423	135644423	Nonsense_Mutation	C	A	p.E1069X
KIRP	TCGA-IZ-8195-01	TMEM245	ENST00000374586.3,ENST00000491854.1	chr9	111849452:111849622:111853201:111853435:111855754:111855865,	111853202	111853435	111853340	111853340	Nonsense_Mutation	G	A	p.R338X
KIRP	TCGA-2Z-A9JG-01	DPYSL4	ENST00000338492.4	chr10	134010524:134010605:134011918:134011987:134012354:134012475,	134011919	134011987	134011925	134011925	Nonsense_Mutation	A	T	p.K210X
KIRP	TCGA-SX-A7SO-01	SUGP1	ENST00000247001.5,ENST00000591007.2,ENST00000589144.1,ENST00000588731.2,ENST00000587119.1	chr19	19390993:19391100:19407797:19408153:19413073:19413185,	19407798	19408153	19408123	19408123	Nonsense_Mutation	G	T	p.Y306X
KIRP	TCGA-Y8-A898-01	ADAM17	ENST00000497134.1,ENST00000310823.3	chr2	9666239:9666373:9667914:9668083:9675962:9676051,	9667915	9668083	9668056	9668056	Nonsense_Mutation	T	A	p.K160X
KIRP	TCGA-G7-A8LB-01	SENP2	ENST00000413407.1,ENST00000444509.1,ENST00000545472.1,ENST00000427465.2,ENST00000296257.5	chr3	185339613:185339693:185341785:185341870:185344085:185344095,	185341786	185341870	185341841	185341841	Nonsense_Mutation	G	T	p.E528X
KIRP	TCGA-MH-A560-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214815375	214815375	Nonsense_Mutation	G	T	p.E1232X
KIRP	TCGA-G7-7502-01	STAB1	ENST00000321725.6	chr3	52553959:52554136:52554219:52554306:52554415:52554565,	52554220	52554306	52554291	52554291	Nonsense_Mutation	C	A	p.C1828X
KIRP	TCGA-AT-A5NU-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937680	167937680	Nonsense_Mutation	G	T	p.E481X
KIRP	TCGA-5P-A9JV-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17701402	17701402	Nonsense_Mutation	A	T	p.K1714X
KIRP	TCGA-BQ-5890-01	NAV1	ENST00000367295.1,ENST00000367302.1,ENST00000367297.4,ENST00000367300.3,ENST00000367296.4,ENST00000295624.6	chr1	201781030:201781102:201781592:201781789:201782267:201782386,	201781593	201781789	201781618	201781618	Nonsense_Mutation	G	T	p.E1684X
KIRP	TCGA-A4-8310-01	PPP6R1	ENST00000591323.1,ENST00000412770.2,ENST00000587283.1	chr19	55752606:55752759:55752844:55753007:55753533:55753647,	55752845	55753007	55752903	55752903	Nonsense_Mutation	A	T	p.L317X
KIRP	TCGA-B9-4115-01	ZFYVE26	ENST00000554523.1,ENST00000557407.1,ENST00000555452.1,ENST00000554557.1,ENST00000347230.4,ENST00000557366.1	chr14	68280702:68280781:68282486:68282763:68283250:68283297,	68282487	68282763	68282659	68282659	Nonsense_Mutation	C	A	p.E8X
KIRP	TCGA-A4-A772-01	HAMP	ENST00000598398.1,ENST00000222304.3	chr19	35773396:35773570:35775691:35775751:35775840:35776016,	35775692	35775751	35775707	35775707	Nonsense_Mutation	G	T	p.E36X
KIRP	TCGA-GL-A59R-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32457055:32457416:32459368:32459512:32466287:32466439,	32459369	32459512	32459420	32459420	Nonsense_Mutation	G	T	p.C810X
KIRP	TCGA-GL-A59R-01	P4HA1	ENST00000394890.2,ENST00000373008.2,ENST00000307116.2,ENST00000440381.1,ENST00000263556.3,ENST00000412021.2	chr10	74806682:74806859:74810810:74811007:74813108:74813348,	74810811	74811007	74810906	74810906	Nonsense_Mutation	G	A	p.Q269X
KIRP	TCGA-BQ-5875-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47059127:47059229:47061249:47061330:47079155:47079267,	47061250	47061330	47061276	47061276	Nonsense_Mutation	T	A	p.K2469X
KIRP	TCGA-BQ-5875-01	MFSD11	ENST00000585692.1,ENST00000355954.3,ENST00000588460.1,ENST00000593181.1,ENST00000590514.1,ENST00000336509.4,ENST00000586622.1,ENST00000590070.1	chr17	74771078:74771253:74772487:74772623:74774269:74774347,	74772488	74772623	74772621	74772621	Nonsense_Mutation	C	T	p.Q395X
KIRP	TCGA-BQ-5875-01	NF2	ENST00000334961.7,ENST00000353887.4	chr22	30035078:30035201:30038190:30038274:30050645:30050714,29999987:30000101:30038190:30038274:30050645:30050714,	30038191	30038274	30038223	30038223	Nonsense_Mutation	C	A	p.Y132X
KIRP	TCGA-BQ-5875-01	MCTS1	ENST00000371317.5	chrX	119737834:119738102:119739261:119739414:119739933:119739991,	119739262	119739414	119739296	119739296	Nonsense_Mutation	C	T	p.Q17X
KIRP	TCGA-HE-7130-01	BIRC6	ENST00000421745.2	chr2	32626230:32626453:32626530:32626691:32631566:32631625,	32626531	32626691	32626579	32626579	Nonsense_Mutation	C	T	p.Q436X
KIRP	TCGA-HE-7130-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830689	61830689	Nonsense_Mutation	G	C	p.S3317X
KIRP	TCGA-4A-A93W-01	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170592248	170592248	Nonsense_Mutation	C	T	p.Q242X
KIRP	TCGA-4A-A93W-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1	chr3	145804573:145804695:145806372:145806498:145809586:145809688,	145806373	145806498	145806425	145806425	Nonsense_Mutation	A	T	p.L318X
KIRP	TCGA-DW-7839-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722672:722805:723240:723353:724723:724829,	723241	723353	723296	723296	Nonsense_Mutation	C	A	p.S466X
KIRP	TCGA-UZ-A9PZ-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257702	158257702	Nonsense_Mutation	C	A	p.C549X
KIRP	TCGA-GL-6846-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157461	106157461	Nonsense_Mutation	G	T	p.E788X
KIRP	TCGA-HE-A5NJ-01	CD9	ENST00000536586.1	chr12	6309040:6309238:6309549:6309731:6334591:6334700,	6309550	6309731	6309731	6309731	Nonsense_Mutation	G	A	p.W22X
KIRP	TCGA-HE-A5NJ-01	NUSAP1	ENST00000560747.1,ENST00000260359.6,ENST00000414849.2,ENST00000560177.1,ENST00000559596.1	chr15	41663724:41663882:41669393:41669502:41672290:41672461,41667909:41668026:41669393:41669502:41672290:41672461,	41669394	41669502	41669495	41669495	Nonsense_Mutation	C	T	p.Q409X
KIRP	TCGA-HE-A5NJ-01	SEPT5	ENST00000438754.2,ENST00000406395.1	chr22	19709162:19709259:19709355:19709480:19709759:19709854,	19709356	19709480	19709430	19709430	Nonsense_Mutation	C	T	p.R306X
KIRP	TCGA-HE-A5NJ-01	SEPT5	ENST00000412544.1,ENST00000455843.1,ENST00000455784.2,ENST00000383045.3,ENST00000431044.1	chr22	19709162:19709259:19709344:19709480:19709759:19709854,	19709345	19709480	19709430	19709430	Nonsense_Mutation	C	T	p.R306X
KIRP	TCGA-DW-7836-01	ADAM32	ENST00000379907.4	chr8	39044427:39044564:39068662:39068843:39079128:39079221,	39068663	39068843	39068760	39068760	Nonsense_Mutation	C	T	p.Q384X
KIRP	TCGA-DW-7836-01	ARSE	ENST00000540563.1,ENST00000381134.3,ENST00000545496.1	chrX	2864038:2864175:2867344:2867768:2871183:2871269,	2867345	2867768	2867409	2867409	Nonsense_Mutation	G	A	p.Q264X
KIRP	TCGA-B3-4103-01	ITGB5	ENST00000481591.1	chr3	124492665:124492759:124515234:124515664:124527868:124528003,124492665:124492759:124515234:124515664:124536467:124536557,	124515235	124515664	124515613	124515613	Nonsense_Mutation	C	A	p.E439X
KIRP	TCGA-SX-A71V-01	GATM	ENST00000558336.1	chr15	45661580:45661719:45668798:45669017:45689119:45689280,45661580:45661719:45668798:45669017:45670582:45670682,	45668799	45669017	45668863	45668863	Nonsense_Mutation	A	C	p.L75X
KIRP	TCGA-P4-AAVM-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000447066.2	chr16	74490546:74490653:74491771:74491892:74493579:74493687,	74491772	74491892	74491772	74491772	Nonsense_Mutation	G	A	p.Q1089X
KIRP	TCGA-A4-8630-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000581711.1,ENST00000577880.1	chr18	2707804:2707918:2718155:2718233:2718312:2718432,	2718156	2718233	2718194	2718194	Nonsense_Mutation	C	T	p.Q767X
KIRP	TCGA-2Z-A9JN-01	DLK2	ENST00000372488.3,ENST00000372485.1	chr6	43422148:43422212:43422487:43422618:43423724:43424370,43422148:43422212:43422487:43422618:43423132:43423328,	43422488	43422618	43422491	43422491	Nonsense_Mutation	G	A	p.R25X
KIRP	TCGA-2Z-A9JT-01	NAP1L1	ENST00000535020.2,ENST00000550934.1,ENST00000551600.1,ENST00000552342.1,ENST00000547479.1,ENST00000393263.3,ENST00000549596.1,ENST00000551992.1,ENST00000261182.8,ENST00000547704.1	chr12	76461184:76461253:76462688:76462774:76478346:76478392,76461150:76461253:76462688:76462774:76467982:76468019,	76462689	76462774	76462722	76462722	Nonsense_Mutation	C	A	p.E24X
KIRP	TCGA-B1-A47N-01	TAX1BP1	ENST00000543117.1,ENST00000265393.6,ENST00000416801.2,ENST00000457186.2,ENST00000433216.2	chr7	27855967:27856139:27856508:27856657:27867356:27867439,27855967:27856013:27856508:27856657:27867356:27867439,	27856509	27856657	27856559	27856559	Nonsense_Mutation	A	T	p.R663X
KIRP	TCGA-2Z-A9J5-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056349	27056349	Nonsense_Mutation	C	T	p.Q449X
KIRP	TCGA-2Z-A9JE-01	NEK2	ENST00000366999.4,ENST00000366998.3,ENST00000540251.1	chr1	211844543:211844626:211846824:211847065:211847637:211847855,	211846825	211847065	211846908	211846908	Nonsense_Mutation	C	A	p.G158X
KIRP	TCGA-2Z-A9JE-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4,ENST00000509178.1	chr5	134117759:134117776:134118634:134118755:134120055:134120231,	134118635	134118755	134118720	134118720	Nonsense_Mutation	T	A	p.C377X
KIRP	TCGA-2Z-A9JE-01	MAZ	ENST00000219782.6	chr16	29819999:29820062:29820860:29821085:29821397:29821408,	29820861	29821085	29820995	29820995	Nonsense_Mutation	C	T	p.Q472X
KIRP	TCGA-Y8-A8RY-01	POU2F1	ENST00000541643.3,ENST00000557874.1,ENST00000443275.1,ENST00000271411.4,ENST00000470928.3,ENST00000560232.2,ENST00000452019.1,ENST00000367865.1,ENST00000367866.2,ENST00000420254.3,ENST00000367862.5	chr1	167341153:167341273:167343344:167343533:167345265:167345392,	167343345	167343533	167343522	167343522	Nonsense_Mutation	C	T	p.Q194X
KIRP	TCGA-Y8-A8RY-01	ANKRD16	ENST00000380094.5,ENST00000380092.4	chr10	5920084:5920250:5922260:5922339:5924968:5925130,	5922261	5922339	5922267	5922267	Nonsense_Mutation	G	A	p.R308X
KIRP	TCGA-2Z-A9JM-01	PHF12	ENST00000332830.4,ENST00000589176.1	chr17	27233873:27234012:27234607:27234690:27235800:27235899,	27234608	27234690	27234650	27234650	Nonsense_Mutation	A	T	p.C833X
KIRP	TCGA-G7-A4TM-01	FOXJ3	ENST00000545068.1,ENST00000372573.1,ENST00000361776.1,ENST00000445886.1,ENST00000372572.1,ENST00000361346.1	chr1	42730785:42730860:42744018:42744343:42776720:42776781,	42744019	42744343	42744042	42744042	Nonsense_Mutation	T	A	p.R116X
KIRP	TCGA-BQ-7044-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000426233.1,ENST00000540518.1,ENST00000236959.9	chr2	216209501:216209594:216211481:216211664:216213816:216213972,	216211482	216211664	216211585	216211585	Nonsense_Mutation	C	A	p.S475X
KIRP	TCGA-G7-6796-01	ST8SIA5	ENST00000590497.1,ENST00000588155.1,ENST00000538168.1	chr18	44272131:44272218:44284534:44284627:44301324:44301432,	44284535	44284627	44284579	44284579	Nonsense_Mutation	G	T	p.C60X
KIRP	TCGA-DW-7842-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000544260.1,ENST00000521772.1,ENST00000381869.3,ENST00000262102.6,ENST00000518713.1,ENST00000381861.3,ENST00000517413.1	chr8	17512072:17512175:17513371:17513574:17532694:17532761,	17513372	17513574	17513393	17513393	Nonsense_Mutation	G	T	p.Y1029X
KIRP	TCGA-A4-7584-01	MITF	ENST00000448226.2	chr3	69788632:69788852:69928284:69928534:69986972:69986986,	69928285	69928534	69928532	69928532	Nonsense_Mutation	A	T	p.K118X
KIRP	TCGA-G7-6795-01	DPYD	ENST00000370192.3	chr1	98039315:98039526:98058773:98058943:98060614:98060722,	98058774	98058943	98058809	98058809	Nonsense_Mutation	T	A	p.K365X
KIRP	TCGA-A4-A48D-01	SCARA3	ENST00000301904.3	chr8	27514298:27514397:27516012:27517056:27528416:27530537,	27516013	27517056	27516084	27516084	Nonsense_Mutation	C	T	p.Q133X
KIRP	TCGA-A4-A48D-01	THBS1	ENST00000260356.5	chr15	39885597:39885869:39886299:39886397:39886501:39886641,	39886300	39886397	39886356	39886356	Nonsense_Mutation	C	A	p.Y1108X
KIRP	TCGA-A4-A48D-01	ACSM2B	ENST00000565232.1,ENST00000329697.6,ENST00000569364.1,ENST00000567288.1,ENST00000563943.1,ENST00000565322.1,ENST00000567001.1	chr16	20557721:20557796:20559383:20559507:20559715:20559795,	20559384	20559507	20559488	20559488	Nonsense_Mutation	G	A	p.Q332X
KIRP	TCGA-B3-8121-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113460277	113460277	Nonsense_Mutation	G	A	p.Q251X
KIRP	TCGA-G7-6790-01	HNRNPK	ENST00000360384.5,ENST00000376264.2,ENST00000351839.3	chr9	86584330:86584355:86585076:86585246:86585651:86585719,86583823:86584295:86585076:86585246:86585651:86585719,	86585077	86585246	86585225	86585225	Nonsense_Mutation	T	A	p.K405X
KIRP	TCGA-A4-7996-01	IL1RL2	ENST00000441515.2,ENST00000481806.1,ENST00000539491.1,ENST00000264257.2	chr2	102842357:102842501:102849422:102849584:102851356:102851737,	102849423	102849584	102849533	102849533	Nonsense_Mutation	C	T	p.Q416X
KIRP	TCGA-A4-7732-01	APTX	ENST00000483148.1,ENST00000478279.1,ENST00000465003.1,ENST00000460945.1	chr9	32987541:32987729:32988080:32988127:32989756:32989893,	32988081	32988127	32988092	32988092	Nonsense_Mutation	T	A	p.K71X
KIRP	TCGA-A4-7732-01	APTX	ENST00000464632.1,ENST00000495360.1,ENST00000485479.1,ENST00000472896.1	chr9	32987541:32987729:32988080:32988122:32989756:32989893,	32988081	32988122	32988092	32988092	Nonsense_Mutation	T	A	p.K71X
KIRP	TCGA-MH-A55Z-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72178890:72179059:72182896:72183049:72183904:72184130,	72182897	72183049	72183032	72183032	Nonsense_Mutation	T	G	p.L429X
KIRP	TCGA-2Z-A9JL-01	TNRC6B	ENST00000402203.1,ENST00000301923.9,ENST00000441751.1	chr22	40513058:40513132:40521775:40521866:40552118:40552186,	40521776	40521866	40521834	40521834	Nonsense_Mutation	G	T	p.E5X
KIRP	TCGA-PJ-A8JU-01	PIEZO2	ENST00000538948.1,ENST00000285141.4,ENST00000503781.3,ENST00000579151.1,ENST00000580640.1,ENST00000582913.1,ENST00000302079.6	chr18	10677743:10677872:10680195:10680368:10681657:10681725,	10680196	10680368	10680342	10680342	Nonsense_Mutation	A	T	p.Y2489X
KIRP	TCGA-A4-7288-01	ALG5	ENST00000239891.3,ENST00000443765.1	chr13	37526650:37526736:37539711:37539863:37546113:37546173,	37539712	37539863	37539814	37539814	Nonsense_Mutation	C	T	p.W224*
KIRP	TCGA-A4-7583-01	CCT7	ENST00000538797.1	chr2	73470173:73470257:73471671:73471843:73474889:73474917,	73471672	73471843	73471796	73471796	Nonsense_Mutation	C	T	p.Q147*
KIRP	TCGA-A4-7584-01	MITF	ENST00000448226.2	chr3	69788632:69788852:69928284:69928534:69986972:69986986,	69928285	69928534	69928532	69928532	Nonsense_Mutation	A	T	p.K118*
KIRP	TCGA-A4-7585-01	KIAA1109	ENST00000495260.1,ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123151085:123151366:123155927:123156178:123159246:123159505,	123155928	123156178	123156097	123156097	Nonsense_Mutation	G	T	p.E1165*
KIRP	TCGA-A4-7732-01	APTX	ENST00000483148.1,ENST00000478279.1,ENST00000465003.1,ENST00000460945.1	chr9	32987541:32987729:32988080:32988127:32989756:32989893,	32988081	32988127	32988092	32988092	Nonsense_Mutation	T	A	p.K57*
KIRP	TCGA-A4-7732-01	APTX	ENST00000464632.1,ENST00000495360.1,ENST00000485479.1,ENST00000472896.1	chr9	32987541:32987729:32988080:32988122:32989756:32989893,	32988081	32988122	32988092	32988092	Nonsense_Mutation	T	A	p.K57*
KIRP	TCGA-A4-7828-01	ISOC2	ENST00000438389.2	chr19	55966368:55966473:55966626:55966697:55967715:55967856,	55966627	55966697	55966664	55966664	Nonsense_Mutation	G	A	p.Q58*
KIRP	TCGA-A4-7915-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877225	38877225	Nonsense_Mutation	G	A	p.W120*
KIRP	TCGA-A4-7996-01	IL1RL2	ENST00000441515.2,ENST00000481806.1,ENST00000539491.1,ENST00000264257.2	chr2	102842357:102842501:102849422:102849584:102851356:102851737,	102849423	102849584	102849533	102849533	Nonsense_Mutation	C	T	p.Q416*
KIRP	TCGA-A4-8310-01	PPP6R1	ENST00000591323.1,ENST00000412770.2,ENST00000587283.1	chr19	55752606:55752759:55752844:55753007:55753533:55753647,	55752845	55753007	55752903	55752903	Nonsense_Mutation	A	T	p.L317*
KIRP	TCGA-A4-8515-01	CPNE1	ENST00000317677.5,ENST00000415920.1,ENST00000483359.1,ENST00000397442.1,ENST00000317619.3,ENST00000352393.4,ENST00000483495.1,ENST00000397446.1,ENST00000397443.1,ENST00000397445.1	chr20	34214656:34214725:34215201:34215335:34218360:34218378,	34215202	34215335	34215310	34215310	Nonsense_Mutation	G	T	p.Y376*
KIRP	TCGA-A4-8516-01	VANGL2	ENST00000368061.2	chr1	160385437:160385698:160385851:160385972:160388791:160389399,	160385852	160385972	160385958	160385958	Nonsense_Mutation	C	T	p.R60*
KIRP	TCGA-A4-8517-01	UBE3C	ENST00000348165.5	chr7	156961741:156961816:156962997:156963144:156967612:156967728,	156962998	156963144	156963038	156963038	Nonsense_Mutation	T	A	p.L79*
KIRP	TCGA-A4-8630-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000581711.1,ENST00000577880.1	chr18	2707804:2707918:2718155:2718233:2718312:2718432,	2718156	2718233	2718194	2718194	Nonsense_Mutation	C	T	p.Q767*
KIRP	TCGA-B1-5398-01	KIF27	ENST00000297814.2	chr9	86482598:86482775:86485433:86485547:86495211:86495409,	86485434	86485547	86485505	86485505	Nonsense_Mutation	T	A	p.K896*
KIRP	TCGA-B1-5398-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75516130	75516130	Nonsense_Mutation	T	A	p.K77*
KIRP	TCGA-B1-5398-01	CPEB4	ENST00000334035.5	chr5	173359452:173359503:173370028:173370052:173371969:173372095,173337525:173337607:173370028:173370052:173371969:173372095,	173370029	173370052	173370039	173370039	Nonsense_Mutation	T	G	p.Y423*
KIRP	TCGA-B3-3925-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84568398:84568483:84581843:84582130:84592655:84592785,	84581844	84582130	84581896	84581896	Nonsense_Mutation	C	T	p.Q585*
KIRP	TCGA-B3-3925-01	DEPDC5	ENST00000473802.1,ENST00000266091.3,ENST00000400242.3,ENST00000469974.1,ENST00000535622.1,ENST00000382105.2,ENST00000382111.2,ENST00000400249.2,ENST00000536766.1,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32188730:32188803:32193585:32193689:32194567:32194642,	32193586	32193689	32193641	32193641	Nonsense_Mutation	A	T	p.K275*
KIRP	TCGA-B3-4103-01	ITGB5	ENST00000481591.1	chr3	124492665:124492759:124515234:124515664:124527868:124528003,124492665:124492759:124515234:124515664:124536467:124536557,	124515235	124515664	124515613	124515613	Nonsense_Mutation	C	A	p.E439*
KIRP	TCGA-B3-4104-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123171376:123171473:123176418:123176495:123179013:123179058,	123176419	123176495	123176469	123176469	Nonsense_Mutation	C	T	p.R146*
KIRP	TCGA-B3-4104-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579415	7579415	Nonsense_Mutation	C	T	p.W91*
KIRP	TCGA-B3-8121-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71231747	71231747	Nonsense_Mutation	T	G	p.Y42*
KIRP	TCGA-B3-8121-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113460277	113460277	Nonsense_Mutation	G	A	p.Q251*
KIRP	TCGA-B9-4113-01	PIGR	ENST00000356495.4	chr1	207105015:207105147:207105800:207105922:207106330:207106511,	207105801	207105922	207105906	207105906	Nonsense_Mutation	C	A	p.G635*
KIRP	TCGA-B9-4115-01	ZFYVE26	ENST00000554523.1,ENST00000557407.1,ENST00000555452.1,ENST00000554557.1,ENST00000347230.4,ENST00000557366.1	chr14	68280702:68280781:68282486:68282763:68283250:68283297,	68282487	68282763	68282659	68282659	Nonsense_Mutation	C	A	p.E8*
KIRP	TCGA-B9-4116-01	SCYL1	ENST00000279270.6,ENST00000525364.1	chr11	65305301:65305351:65305437:65305653:65305740:65305795,65305301:65305351:65305437:65305653:65305912:65306146,	65305438	65305653	65305494	65305494	Nonsense_Mutation	G	A	p.W696*
KIRP	TCGA-B9-4116-01	SCYL1	ENST00000533862.1	chr11	65305301:65305351:65305474:65305653:65305740:65305795,	65305475	65305653	65305494	65305494	Nonsense_Mutation	G	A	p.W696*
KIRP	TCGA-B9-5155-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220439	1220439	Nonsense_Mutation	A	T	p.K178*
KIRP	TCGA-BQ-5875-01	NF2	ENST00000334961.7,ENST00000353887.4	chr22	30035078:30035201:30038190:30038274:30050645:30050714,29999987:30000101:30038190:30038274:30050645:30050714,	30038191	30038274	30038223	30038223	Nonsense_Mutation	C	A	p.Y132*
KIRP	TCGA-BQ-5875-01	MFSD11	ENST00000585692.1,ENST00000355954.3,ENST00000588460.1,ENST00000593181.1,ENST00000590514.1,ENST00000336509.4,ENST00000586622.1,ENST00000590070.1	chr17	74771078:74771253:74772487:74772623:74774269:74774347,	74772488	74772623	74772621	74772621	Nonsense_Mutation	C	T	p.Q395*
KIRP	TCGA-BQ-5875-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47059127:47059229:47061249:47061330:47079155:47079267,	47061250	47061330	47061276	47061276	Nonsense_Mutation	T	A	p.K2469*
KIRP	TCGA-BQ-5877-01	DSP	ENST00000418664.2,ENST00000506617.1,ENST00000379802.3	chr6	7559518:7559633:7562884:7563013:7563968:7564019,	7562885	7563013	7562980	7562980	Nonsense_Mutation	T	A	p.Y231*
KIRP	TCGA-BQ-5877-01	ORC2	ENST00000464147.1,ENST00000234296.2	chr2	201785781:201785862:201790558:201790655:201791490:201791623,	201790559	201790655	201790562	201790562	Nonsense_Mutation	C	A	p.E382*
KIRP	TCGA-BQ-5878-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112455668:112455811:112457324:112457456:112460321:112460478,	112457325	112457456	112457351	112457351	Nonsense_Mutation	G	A	p.Q1130*
KIRP	TCGA-BQ-5878-01	OASL	ENST00000257570.5	chr12	121461792:121461940:121465378:121465620:121469244:121469397,	121465379	121465620	121465530	121465530	Nonsense_Mutation	C	A	p.E250*
KIRP	TCGA-BQ-5882-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39591636:39591681:39596462:39596549:39597188:39597267,	39596463	39596549	39596542	39596542	Nonsense_Mutation	A	T	p.Y217*
KIRP	TCGA-BQ-5882-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288035	74288035	Nonsense_Mutation	G	A	p.Q759*
KIRP	TCGA-BQ-5882-01	FAM49B	ENST00000520204.1,ENST00000401979.2,ENST00000519824.2,ENST00000519142.1,ENST00000518283.1,ENST00000519020.1,ENST00000523993.1,ENST00000519540.1,ENST00000523288.1,ENST00000522746.1,ENST00000517654.1,ENST00000520254.1,ENST00000523509.1,ENST00000519110.1	chr8	130874571:130874580:130883620:130883742:130915557:130915596,130867943:130867993:130883620:130883742:130915557:130915596,130874571:130874580:130883620:130883742:130951853:130951940,130874571:130874580:130883620:130883742:130891634:130891717,	130883621	130883742	130883632	130883632	Nonsense_Mutation	C	A	p.E62*
KIRP	TCGA-BQ-5884-01	SOS1	ENST00000428721.2,ENST00000395038.2,ENST00000451331.1,ENST00000426016.1,ENST00000402219.2	chr2	39283873:39284007:39285813:39285945:39294768:39294894,	39285814	39285945	39285904	39285904	Nonsense_Mutation	C	T	p.W85*
KIRP	TCGA-BQ-5890-01	NAV1	ENST00000367295.1,ENST00000367302.1,ENST00000367297.4,ENST00000367300.3,ENST00000367296.4,ENST00000295624.6	chr1	201781030:201781102:201781592:201781789:201782267:201782386,	201781593	201781789	201781618	201781618	Nonsense_Mutation	G	T	p.E1684*
KIRP	TCGA-BQ-5893-01	CSMD3	ENST00000343508.3,ENST00000534172.1,ENST00000297405.5,ENST00000339701.3,ENST00000455883.2,ENST00000352409.3	chr8	113246593:113246706:113249418:113249577:113253948:113254014,	113249419	113249577	113249531	113249531	Nonsense_Mutation	G	T	p.Y3505*
KIRP	TCGA-BQ-7045-01	GOLGA2	ENST00000458730.1	chr9	131028248:131028299:131028565:131028604:131029472:131029538,131028248:131028299:131028565:131028604:131029736:131029796,	131028566	131028604	131028577	131028577	Nonsense_Mutation	G	A	p.Q197*
KIRP	TCGA-BQ-7045-01	SPG7	ENST00000563218.1,ENST00000566221.1,ENST00000268704.2	chr16	89611133:89611180:89613065:89613168:89614410:89614521,	89613066	89613168	89613084	89613084	Nonsense_Mutation	G	T	p.E490*
KIRP	TCGA-BQ-7048-01	RNF157	ENST00000269391.6,ENST00000319945.6	chr17	74157642:74157728:74157923:74158083:74158632:74158704,	74157924	74158083	74158077	74158077	Nonsense_Mutation	C	A	p.E267*
KIRP	TCGA-BQ-7053-01	NKIRAS1	ENST00000443659.2,ENST00000388759.3,ENST00000425478.2,ENST00000421515.2,ENST00000416026.2	chr3	23934555:23934828:23942298:23942540:23952301:23952412,	23942299	23942540	23942484	23942484	Nonsense_Mutation	G	A	p.R51*
KIRP	TCGA-BQ-7053-01	CNTNAP3	ENST00000323947.7,ENST00000443583.2	chr9	39132928:39133129:39140515:39140635:39165929:39166073,	39140516	39140635	39140600	39140600	Nonsense_Mutation	G	A	p.R598*
KIRP	TCGA-BQ-7053-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73744921:73745126:73746191:73746349:73746760:73746871,	73746192	73746349	73746316	73746316	Nonsense_Mutation	G	A	p.W1147*
KIRP	TCGA-BQ-7059-01	C1orf21	ENST00000235307.6	chr1	184446598:184446737:184476721:184476816:184559872:184559949,	184476722	184476816	184476745	184476745	Nonsense_Mutation	G	T	p.E40*
KIRP	TCGA-BQ-7062-01	PPP1R16B	ENST00000299824.1,ENST00000373331.2	chr20	37536448:37536578:37536670:37536836:37546799:37551667,	37536671	37536836	37536822	37536822	Nonsense_Mutation	G	T	p.E394*
KIRP	TCGA-DW-7834-01	PEF1	ENST00000440872.2	chr1	32100434:32100544:32100822:32101123:32110441:32110474,	32100823	32101123	32100955	32100955	Nonsense_Mutation	C	A	p.G65*
KIRP	TCGA-DW-7839-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722672:722805:723240:723353:724723:724829,	723241	723353	723296	723296	Nonsense_Mutation	C	A	p.S466*
KIRP	TCGA-DW-7840-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470014	161470014	Nonsense_Mutation	C	A	p.S237*
KIRP	TCGA-DZ-6132-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379679.1,ENST00000338947.5,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000488717.1,ENST00000358477.2	chr13	38229224:38229420:38237552:38237866:38248364:38248504,	38237553	38237866	38237841	38237841	Nonsense_Mutation	G	T	p.S467*
KIRP	TCGA-DZ-6133-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000430577.2,ENST00000436828.1,ENST00000395851.1,ENST00000585296.1,ENST00000268712.3	chr17	16075176:16075309:16089867:16090001:16097775:16097925,	16089868	16090001	16089949	16089949	Nonsense_Mutation	G	C	p.S54*
KIRP	TCGA-DZ-6133-01	CASC3	ENST00000418132.3,ENST00000474190.1,ENST00000264645.7	chr17	38318254:38318406:38318977:38319154:38319733:38319855,	38318978	38319154	38319005	38319005	Nonsense_Mutation	G	A	p.W212*
KIRP	TCGA-DZ-6134-01	GRM4	ENST00000374181.4,ENST00000538487.2,ENST00000609973.1	chr6	34029669:34029805:34059659:34059876:34100754:34100798,	34059660	34059876	34059742	34059742	Nonsense_Mutation	C	T	p.W218*
KIRP	TCGA-G7-6789-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
KIRP	TCGA-G7-6789-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
KIRP	TCGA-G7-6790-01	HNRNPK	ENST00000360384.5,ENST00000376264.2,ENST00000351839.3	chr9	86584330:86584355:86585076:86585246:86585651:86585719,86583823:86584295:86585076:86585246:86585651:86585719,	86585077	86585246	86585225	86585225	Nonsense_Mutation	T	A	p.K405*
KIRP	TCGA-G7-6795-01	DPYD	ENST00000370192.3	chr1	98039315:98039526:98058773:98058943:98060614:98060722,	98058774	98058943	98058809	98058809	Nonsense_Mutation	T	A	p.K365*
KIRP	TCGA-G7-7502-01	STAB1	ENST00000321725.6	chr3	52553959:52554136:52554219:52554306:52554415:52554565,	52554220	52554306	52554291	52554291	Nonsense_Mutation	C	A	p.C1828*
KIRP	TCGA-GL-6846-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157461	106157461	Nonsense_Mutation	G	T	p.E788*
KIRP	TCGA-GL-8500-01	POLR2F	ENST00000407936.1,ENST00000606538.1,ENST00000443002.1,ENST00000405557.1,ENST00000484894.1,ENST00000470701.1,ENST00000442738.2	chr22	38352779:38352908:38355352:38355483:38363105:38363177,38352779:38352849:38355352:38355483:38363105:38363177,	38355353	38355483	38355418	38355418	Nonsense_Mutation	C	G	p.S72*
KIRP	TCGA-HE-7130-01	BIRC6	ENST00000421745.2	chr2	32626230:32626453:32626530:32626691:32631566:32631625,	32626531	32626691	32626579	32626579	Nonsense_Mutation	C	T	p.Q436*
KIRP	TCGA-HE-7130-01	MDH1	ENST00000409476.1	chr2	63824681:63824708:63826303:63826426:63831829:63831944,63816131:63816180:63826303:63826426:63831829:63831944,	63826304	63826426	63826356	63826356	Nonsense_Mutation	C	G	p.S143*
KIRP	TCGA-HE-7130-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830689	61830689	Nonsense_Mutation	G	C	p.S3317*
KIRP	TCGA-HE-7130-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226358	21226358	Nonsense_Mutation	C	A	p.E561*
KIRP	TCGA-IZ-8195-01	TMEM245	ENST00000374586.3,ENST00000491854.1	chr9	111849452:111849622:111853201:111853435:111855754:111855865,	111853202	111853435	111853340	111853340	Nonsense_Mutation	G	A	p.R338*
KIRP	TCGA-IZ-8195-01	AHI1	ENST00000265602.6,ENST00000417892.2,ENST00000475846.2,ENST00000367800.4,ENST00000457866.2,ENST00000367799.2	chr6	135639656:135639754:135644299:135644462:135679269:135679325,	135644300	135644462	135644423	135644423	Nonsense_Mutation	C	A	p.E1069*
KIRP	TCGA-IZ-8195-01	USP39	ENST00000409766.3	chr2	85872070:85872206:85875052:85875139:85875883:85875976,85872936:85873022:85875052:85875139:85875883:85875976,85868177:85868241:85875052:85875139:85875883:85875976,	85875053	85875139	85875075	85875075	Nonsense_Mutation	T	G	p.L529*
KIRP	TCGA-MH-A55Z-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72178890:72179059:72182896:72183049:72183904:72184130,	72182897	72183049	72183032	72183032	Nonsense_Mutation	T	G	p.L421X
KIRP	TCGA-P4-A5EB-01	RNF216	ENST00000425013.2	chr7	5778906:5778983:5780603:5781275:5792476:5792610,	5780604	5781275	5781127	5781127	Nonsense_Mutation	G	C	p.S117X
KIRP	TCGA-P4-A5EB-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5781127	5781127	Nonsense_Mutation	G	C	p.S117X
KIRP	TCGA-P4-A5E8-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748237	43748237	Nonsense_Mutation	G	A	p.Q852X
KIRP	TCGA-HE-A5NK-01	DHX35	ENST00000373325.2,ENST00000484417.1,ENST00000252011.3,ENST00000373323.4	chr20	37650515:37650578:37653872:37654002:37657060:37657142,37652332:37652410:37653872:37654002:37657060:37657142,	37653873	37654002	37653978	37653978	Nonsense_Mutation	C	T	p.Q562X
KIRP	TCGA-A4-A5Y1-01	VPS13C	ENST00000261517.5,ENST00000249837.3	chr15	62148484:62148608:62155638:62155727:62160857:62160972,	62155639	62155727	62155703	62155703	Nonsense_Mutation	C	A	p.E3587X
KIRP	TCGA-B3-3925-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84568398:84568483:84581843:84582130:84592655:84592785,	84581844	84582130	84581896	84581896	Nonsense_Mutation	C	T	p.Q585X
KIRP	TCGA-BQ-7051-01	HHIPL1	ENST00000357223.2	chr14	100111479:100111799:100118560:100119207:100123336:100123480,	100118561	100119207	100119115	100119115	Nonsense_Mutation	C	G	p.Y270X
KIRP	TCGA-DZ-6134-01	GRM4	ENST00000374181.4,ENST00000538487.2,ENST00000609973.1	chr6	34029669:34029805:34059659:34059876:34100754:34100798,	34059660	34059876	34059742	34059742	Nonsense_Mutation	C	T	p.W218X
KIRP	TCGA-A4-7828-01	PRAM1	ENST00000423345.4,ENST00000255612.3	chr19	8563109:8563173:8563259:8564664:8567448:8567495,	8563260	8564664	8563524	8563524	Nonsense_Mutation	C	A	p.E390X
KIRP	TCGA-A4-8630-01	KHSRP	ENST00000595112.1,ENST00000595548.1,ENST00000398148.3,ENST00000595258.1	chr19	6420083:6420155:6420432:6420482:6421288:6421328,	6420433	6420482	6420477	6420477	Nonsense_Mutation	G	C	p.S144X
KIRP	TCGA-A4-8630-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131670920	131670920	Nonsense_Mutation	G	T	p.E493X
KIRP	TCGA-BQ-7053-01	NKIRAS1	ENST00000443659.2,ENST00000388759.3,ENST00000425478.2,ENST00000421515.2,ENST00000416026.2	chr3	23934555:23934828:23942298:23942540:23952301:23952412,	23942299	23942540	23942484	23942484	Nonsense_Mutation	G	A	p.R51X
KIRP	TCGA-BQ-5877-01	FAM86C1	ENST00000426628.2	chr11	71500828:71500891:71502784:71502865:71507062:71507212,	71502785	71502865	71502832	71502832	Nonsense_Mutation	T	A	p.Y69X
KIRP	TCGA-BQ-5877-01	FAM86C1	ENST00000510443.1	chr11	71500828:71500891:71502781:71502865:71504425:71504527,71500828:71500891:71502781:71502865:71507062:71507212,	71502782	71502865	71502832	71502832	Nonsense_Mutation	T	A	p.Y69X
KIRP	TCGA-HE-7130-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226358	21226358	Nonsense_Mutation	C	A	p.E561X
KIRP	TCGA-HE-7130-01	MDH1	ENST00000409476.1	chr2	63824681:63824708:63826303:63826426:63831829:63831944,63816131:63816180:63826303:63826426:63831829:63831944,	63826304	63826426	63826356	63826356	Nonsense_Mutation	C	G	p.S161X
KIRP	TCGA-A4-8515-01	CPNE1	ENST00000317677.5,ENST00000415920.1,ENST00000483359.1,ENST00000397442.1,ENST00000317619.3,ENST00000352393.4,ENST00000483495.1,ENST00000397446.1,ENST00000397443.1,ENST00000397445.1	chr20	34214656:34214725:34215201:34215335:34218360:34218378,	34215202	34215335	34215310	34215310	Nonsense_Mutation	G	T	p.Y381X
KIRP	TCGA-B9-4113-01	PIGR	ENST00000356495.4	chr1	207105015:207105147:207105800:207105922:207106330:207106511,	207105801	207105922	207105906	207105906	Nonsense_Mutation	C	A	p.G635X
KIRP	TCGA-A4-A48D-01	ACSM2B	ENST00000565232.1,ENST00000329697.6,ENST00000569364.1,ENST00000567288.1,ENST00000563943.1,ENST00000565322.1,ENST00000567001.1	chr16	20557721:20557796:20559383:20559507:20559715:20559795,	20559384	20559507	20559488	20559488	Nonsense_Mutation	G	A	p.Q332*
KIRP	TCGA-A4-A48D-01	THBS1	ENST00000260356.5	chr15	39885597:39885869:39886299:39886397:39886501:39886641,	39886300	39886397	39886356	39886356	Nonsense_Mutation	C	A	p.Y1108*
KIRP	TCGA-A4-A48D-01	SCARA3	ENST00000301904.3	chr8	27514298:27514397:27516012:27517056:27528416:27530537,	27516013	27517056	27516084	27516084	Nonsense_Mutation	C	T	p.Q133*
KIRP	TCGA-A4-A4ZT-01	LIX1	ENST00000274382.4	chr5	96440893:96440989:96443063:96443204:96460169:96460333,	96443064	96443204	96443096	96443096	Nonsense_Mutation	C	A	p.E119*
KIRP	TCGA-A4-A5Y1-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220519	29220519	Nonsense_Mutation	A	T	p.K1550*
KIRP	TCGA-A4-A5Y1-01	VPS13C	ENST00000261517.5,ENST00000249837.3	chr15	62148484:62148608:62155638:62155727:62160857:62160972,	62155639	62155727	62155703	62155703	Nonsense_Mutation	C	A	p.E3630*
KIRP	TCGA-A4-A5Y1-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671593	186671593	Nonsense_Mutation	C	T	p.Q5943*
KIRP	TCGA-A4-A6HP-01	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755929	153755929	Nonsense_Mutation	C	T	p.R221*
KIRP	TCGA-AT-A5NU-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937680	167937680	Nonsense_Mutation	G	T	p.E481*
KIRP	TCGA-B1-A47N-01	TAX1BP1	ENST00000543117.1,ENST00000265393.6,ENST00000416801.2,ENST00000457186.2,ENST00000433216.2	chr7	27855967:27856139:27856508:27856657:27867356:27867439,27855967:27856013:27856508:27856657:27867356:27867439,	27856509	27856657	27856559	27856559	Nonsense_Mutation	A	T	p.R663*
KIRP	TCGA-B1-A654-01	PKHD1L1	ENST00000378402.5	chr8	110487346:110487498:110488736:110488896:110489453:110489625,	110488737	110488896	110488892	110488892	Nonsense_Mutation	C	G	p.Y2971*
KIRP	TCGA-B1-A654-01	HSP90AA1	ENST00000216281.8,ENST00000334701.7	chr14	102547385:102548158:102548447:102548781:102549370:102549639,	102548448	102548781	102548766	102548766	Nonsense_Mutation	G	A	p.R591*
KIRP	TCGA-B1-A656-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649430	52649430	Nonsense_Mutation	T	A	p.K621*
KIRP	TCGA-B1-A656-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000601032.1,ENST00000243562.9,ENST00000396819.3,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000598677.1,ENST00000595118.1,ENST00000602240.1	chr19	41125251:41125398:41129508:41129637:41129840:41129851,41128854:41128926:41129508:41129637:41129840:41129851,	41129509	41129637	41129532	41129532	Nonsense_Mutation	C	T	p.R1260*
KIRP	TCGA-G7-A4TM-01	FOXJ3	ENST00000545068.1,ENST00000372573.1,ENST00000361776.1,ENST00000445886.1,ENST00000372572.1,ENST00000361346.1	chr1	42730785:42730860:42744018:42744343:42776720:42776781,	42744019	42744343	42744042	42744042	Nonsense_Mutation	T	A	p.R116*
KIRP	TCGA-GL-A4EM-01	PANX1	ENST00000436171.2,ENST00000227638.3	chr11	93886656:93886796:93911534:93911758:93912767:93913423,	93911535	93911758	93911576	93911576	Nonsense_Mutation	C	G	p.Y121*
KIRP	TCGA-GL-A59R-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32457055:32457416:32459368:32459512:32466287:32466439,	32459369	32459512	32459420	32459420	Nonsense_Mutation	G	T	p.C810*
KIRP	TCGA-GL-A59R-01	DNAH5	ENST00000265104.4	chr5	13811755:13811932:13814713:13814955:13817656:13817803,	13814714	13814955	13814812	13814812	Nonsense_Mutation	C	A	p.E2378*
KIRP	TCGA-GL-A59R-01	P4HA1	ENST00000394890.2,ENST00000373008.2,ENST00000307116.2,ENST00000440381.1,ENST00000263556.3,ENST00000412021.2	chr10	74806682:74806859:74810810:74811007:74813108:74813348,	74810811	74811007	74810906	74810906	Nonsense_Mutation	G	A	p.Q269*
KIRP	TCGA-GL-A59T-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131369882:131369982:131370130:131370328:131370408:131370555,	131370131	131370328	131370209	131370209	Nonsense_Mutation	G	T	p.G1409*
KIRP	TCGA-HE-A5NI-01	PRKCD	ENST00000394729.2,ENST00000330452.3	chr3	53219619:53219716:53219942:53220043:53220182:53220293,	53219943	53220043	53220041	53220041	Nonsense_Mutation	A	T	p.K362*
KIRP	TCGA-HE-A5NI-01	UACA	ENST00000539319.1	chr15	70987355:70987444:70991865:70991999:71055668:71055769,	70991866	70991999	70991969	70991969	Nonsense_Mutation	G	A	p.R37*
KIRP	TCGA-HE-A5NJ-01	NUSAP1	ENST00000560747.1,ENST00000260359.6,ENST00000414849.2,ENST00000560177.1,ENST00000559596.1	chr15	41663724:41663882:41669393:41669502:41672290:41672461,41667909:41668026:41669393:41669502:41672290:41672461,	41669394	41669502	41669495	41669495	Nonsense_Mutation	C	T	p.Q409*
KIRP	TCGA-HE-A5NJ-01	CD36	ENST00000419819.2,ENST00000394788.3,ENST00000432207.1,ENST00000435819.1,ENST00000433696.2,ENST00000538969.1,ENST00000447544.2,ENST00000309881.7,ENST00000534394.1,ENST00000544133.1	chr7	80301280:80301356:80302085:80302159:80302670:80302725,	80302086	80302159	80302113	80302113	Nonsense_Mutation	A	T	p.K385*
KIRP	TCGA-HE-A5NK-01	DHX35	ENST00000373325.2,ENST00000484417.1,ENST00000252011.3,ENST00000373323.4	chr20	37650515:37650578:37653872:37654002:37657060:37657142,37652332:37652410:37653872:37654002:37657060:37657142,	37653873	37654002	37653978	37653978	Nonsense_Mutation	C	T	p.Q593*
KIRP	TCGA-IZ-A6M9-01	SPTBN5	ENST00000320955.6	chr15	42142066:42142157:42143051:42143137:42143256:42143348,	42143052	42143137	42143073	42143073	Nonsense_Mutation	G	A	p.R3599*
KIRP	TCGA-IZ-A6M9-01	FBXO5	ENST00000367241.3,ENST00000229758.3	chr6	153291663:153292549:153293406:153293589:153294180:153294271,	153293407	153293589	153293427	153293427	Nonsense_Mutation	G	A	p.R358*
KIRP	TCGA-MH-A55W-01	LIPI	ENST00000536861.1	chr21	15558281:15558390:15561354:15561740:15583120:15583166,	15561355	15561740	15561570	15561570	Nonsense_Mutation	G	A	p.Q94*
KIRP	TCGA-MH-A55Z-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72178890:72179059:72182896:72183049:72183904:72184130,	72182897	72183049	72183032	72183032	Nonsense_Mutation	T	G	p.L429*
KIRP	TCGA-MH-A560-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214815375	214815375	Nonsense_Mutation	G	T	p.E1232*
KIRP	TCGA-P4-A5E6-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813548	214813548	Nonsense_Mutation	A	T	p.K623*
KIRP	TCGA-P4-A5E7-01	TTC27	ENST00000317907.4	chr2	32983358:32983586:33002948:33003047:33007692:33007745,	33002949	33003047	33002960	33002960	Nonsense_Mutation	G	A	p.W564*
KIRP	TCGA-P4-A5E8-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748237	43748237	Nonsense_Mutation	G	A	p.Q852*
KIRP	TCGA-P4-A5EA-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73675809	73675809	Nonsense_Mutation	A	T	p.R718*
KIRP	TCGA-P4-A5EA-01	TFE3	ENST00000315869.7,ENST00000493583.1	chrX	48888025:48888112:48888911:48889059:48890979:48891055,	48888912	48889059	48888986	48888986	Nonsense_Mutation	G	A	p.Q404*
KIRP	TCGA-P4-A5EB-01	RNF216	ENST00000425013.2	chr7	5778906:5778983:5780603:5781275:5792476:5792610,	5780604	5781275	5781127	5781127	Nonsense_Mutation	G	C	p.S174*
KIRP	TCGA-P4-A5EB-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5781127	5781127	Nonsense_Mutation	G	C	p.S174*
KIRP	TCGA-P4-A5EB-01	OPTN	ENST00000424614.1,ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000263036.5	chr10	13158267:13158340:13160887:13161040:13164384:13164487,	13160888	13161040	13160994	13160994	Nonsense_Mutation	C	T	p.Q245*
KIRP	TCGA-P4-A5EB-01	OPTN	ENST00000378764.2,ENST00000378752.3	chr10	13158267:13158340:13160905:13161040:13164384:13164487,	13160906	13161040	13160994	13160994	Nonsense_Mutation	C	T	p.Q245*
KIRP	TCGA-P4-A5EB-01	KEAP1	ENST00000585845.1	chr19	10602935:10602938:10610070:10610262:10613916:10614234,	10610071	10610262	10610178	10610178	Nonsense_Mutation	G	A	p.Q178*
KIRP	TCGA-P4-A5EB-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610178	10610178	Nonsense_Mutation	G	A	p.Q178*
KIRP	TCGA-A4-7583-01	CCT7	ENST00000538797.1	chr2	73470173:73470257:73471671:73471843:73474889:73474917,	73471672	73471843	73471796	73471796	Nonsense_Mutation	C	T	p.Q191*
KIRP	TCGA-A4-7732-01	APTX	ENST00000483148.1,ENST00000478279.1,ENST00000465003.1,ENST00000460945.1	chr9	32987541:32987729:32988080:32988127:32989756:32989893,	32988081	32988127	32988092	32988092	Nonsense_Mutation	T	A	p.K71*
KIRP	TCGA-A4-7732-01	APTX	ENST00000464632.1,ENST00000495360.1,ENST00000485479.1,ENST00000472896.1	chr9	32987541:32987729:32988080:32988122:32989756:32989893,	32988081	32988122	32988092	32988092	Nonsense_Mutation	T	A	p.K71*
KIRP	TCGA-A4-7828-01	ISOC2	ENST00000438389.2	chr19	55966368:55966473:55966626:55966697:55967715:55967856,	55966627	55966697	55966664	55966664	Nonsense_Mutation	G	A	p.Q144*
KIRP	TCGA-A4-8310-01	PPP6R1	ENST00000591323.1,ENST00000412770.2,ENST00000587283.1	chr19	55752606:55752759:55752844:55753007:55753533:55753647,	55752845	55753007	55752903	55752903	Nonsense_Mutation	A	T	p.L379*
KIRP	TCGA-A4-8515-01	CPNE1	ENST00000317677.5,ENST00000415920.1,ENST00000483359.1,ENST00000397442.1,ENST00000317619.3,ENST00000352393.4,ENST00000483495.1,ENST00000397446.1,ENST00000397443.1,ENST00000397445.1	chr20	34214656:34214725:34215201:34215335:34218360:34218378,	34215202	34215335	34215310	34215310	Nonsense_Mutation	G	T	p.Y381*
KIRP	TCGA-B3-4104-01	GOLGB1	ENST00000393667.3,ENST00000482512.1,ENST00000491690.1,ENST00000340645.5	chr3	121383772:121383878:121386322:121386457:121386907:121387005,	121386323	121386457	121386444	121386444	Nonsense_Mutation	G	A	p.Q3150*
KIRP	TCGA-BQ-5875-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47059127:47059229:47061249:47061330:47079155:47079267,	47061250	47061330	47061276	47061276	Nonsense_Mutation	T	A	p.K2536*
KIRP	TCGA-BQ-5878-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671552	186671552	Nonsense_Mutation	C	G	p.S5929*
KIRP	TCGA-DW-5560-01	ADAMTS18	ENST00000282849.5	chr16	77323160:77323308:77325162:77325375:77326972:77327155,	77325163	77325375	77325309	77325309	Nonsense_Mutation	C	A	p.G1086*
KIRP	TCGA-GL-6846-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157461	106157461	Nonsense_Mutation	G	T	p.E809*
KIRP	TCGA-HE-7130-01	MDH1	ENST00000409476.1	chr2	63824681:63824708:63826303:63826426:63831829:63831944,63816131:63816180:63826303:63826426:63831829:63831944,	63826304	63826426	63826356	63826356	Nonsense_Mutation	C	G	p.S161*
KIRP	TCGA-HE-7130-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226358	21226358	Nonsense_Mutation	C	A	p.E555*
LGG	TCGA-E1-5307-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939496	76939496	Nonsense_Mutation	G	A	p.R418X
LGG	TCGA-HT-8109-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190411	72190411	Nonsense_Mutation	A	T	p.L1478X
LGG	TCGA-HT-7611-01	AGAP1	ENST00000409538.1,ENST00000336665.5,ENST00000304032.8,ENST00000402604.2,ENST00000409457.1	chr2	236617822:236617881:236626200:236626288:236649606:236649692,	236626201	236626288	236626276	236626276	Nonsense_Mutation	G	T	p.E100X
LGG	TCGA-HT-8563-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114070216	114070216	Nonsense_Mutation	G	A	p.Q164X
LGG	TCGA-HT-8563-01	STK32B	ENST00000512018.1,ENST00000510398.1,ENST00000512636.1,ENST00000508728.1,ENST00000505508.1,ENST00000282908.5	chr4	5458533:5458650:5461829:5461955:5468429:5468561,	5461830	5461955	5461892	5461892	Nonsense_Mutation	C	G	p.Y282X
LGG	TCGA-IK-8125-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832988	24832988	Nonsense_Mutation	A	T	p.K1597X
LGG	TCGA-FG-6690-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
LGG	TCGA-FG-6690-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939522	76939522	Nonsense_Mutation	A	T	p.L409X
LGG	TCGA-DU-5852-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63059011:63059115:63064774:63064929:63065030:63065199,	63064775	63064929	63064782	63064782	Nonsense_Mutation	C	T	p.R172X
LGG	TCGA-HT-7471-01	ADCY10	ENST00000367851.4	chr1	167868660:167868866:167870899:167871043:167871253:167871292,	167870900	167871043	167870912	167870912	Nonsense_Mutation	G	A	p.R142X
LGG	TCGA-HT-7471-01	ADCY10	ENST00000367848.1	chr1	167868660:167868866:167870899:167871080:167871253:167871292,	167870900	167871080	167870912	167870912	Nonsense_Mutation	G	A	p.R142X
LGG	TCGA-CS-6665-01	CD244	ENST00000322302.7	chr1	160808728:160808839:160811373:160811691:160832406:160832490,	160811374	160811691	160811431	160811431	Nonsense_Mutation	C	A	p.E108X
LGG	TCGA-CS-6665-01	GPR137B	ENST00000419162.1	chr1	236332005:236332055:236341713:236341936:236343178:236343328,236306067:236306336:236341713:236341936:236343178:236343328,	236341714	236341936	236341829	236341829	Nonsense_Mutation	C	T	p.R194X
LGG	TCGA-CS-6290-01	PIH1D1	ENST00000596049.1	chr19	49954038:49954105:49954741:49954835:49956632:49956750,49954038:49954105:49954741:49954835:49956649:49956751,	49954742	49954835	49954795	49954795	Nonsense_Mutation	C	A	p.E13X
LGG	TCGA-CS-6290-01	PIH1D1	ENST00000597415.1	chr19	49954038:49954105:49954624:49954835:49956526:49956754,	49954625	49954835	49954795	49954795	Nonsense_Mutation	C	A	p.E13X
LGG	TCGA-CS-6290-01	PIH1D1	ENST00000601825.1	chr19	49954038:49954105:49954741:49954848:49956632:49956750,	49954742	49954848	49954795	49954795	Nonsense_Mutation	C	A	p.E13X
LGG	TCGA-DB-5279-01	NCF2	ENST00000367535.3,ENST00000367536.1	chr1	183542319:183542427:183543621:183543756:183546733:183546842,	183543622	183543756	183543623	183543623	Nonsense_Mutation	C	T	p.W167X
LGG	TCGA-CS-4941-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57X
LGG	TCGA-CS-4941-01	ABCG1	ENST00000361802.2,ENST00000398437.1,ENST00000472587.1,ENST00000340588.4	chr21	43706043:43706104:43707998:43708183:43708320:43708422,	43707999	43708183	43708163	43708163	Nonsense_Mutation	C	T	p.R380X
LGG	TCGA-DB-5273-01	RUFY1	ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1	chr5	179012796:179012866:179016546:179016648:179018625:179018742,	179016547	179016648	179016595	179016595	Nonsense_Mutation	C	T	p.Q359X
LGG	TCGA-DB-5273-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939964	76939964	Nonsense_Mutation	G	A	p.Q262X
LGG	TCGA-HT-A61C-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37287723:37287876:37289081:37289193:37291882:37292133,	37289082	37289193	37289163	37289163	Nonsense_Mutation	G	A	p.R539X
LGG	TCGA-HT-7478-01	GNAO1	ENST00000262493.6	chr16	56385352:56385449:56388777:56388993:56390014:56391356,	56388778	56388993	56388962	56388962	Nonsense_Mutation	C	G	p.Y354X
LGG	TCGA-DB-5277-01	RPAP3	ENST00000380650.4,ENST00000551293.1	chr12	48095246:48095387:48096470:48096629:48099734:48099769,	48096471	48096629	48096531	48096531	Nonsense_Mutation	C	T	p.W31X
LGG	TCGA-HW-7495-01	BAX	ENST00000391871.3,ENST00000415969.2,ENST00000293288.8,ENST00000345358.7,ENST00000502487.1,ENST00000503726.1,ENST00000513545.1	chr19	49458804:49458856:49459454:49459590:49464066:49464092,49458185:49458219:49459454:49459590:49464066:49464092,49458943:49459090:49459454:49459590:49464066:49464092,	49459455	49459590	49459501	49459501	Nonsense_Mutation	C	T	p.R45X
LGG	TCGA-HT-A619-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985704	36985704	Nonsense_Mutation	C	T	p.R808X
LGG	TCGA-HT-8018-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
LGG	TCGA-HT-8018-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839768	62839768	Nonsense_Mutation	C	T	p.Q407X
LGG	TCGA-HT-7880-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937900	76937900	Nonsense_Mutation	T	A	p.K950X
LGG	TCGA-HT-8106-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
LGG	TCGA-HT-8110-01	FAIM	ENST00000479848.1,ENST00000360570.3,ENST00000338446.4,ENST00000464668.1,ENST00000393035.2,ENST00000393034.2,ENST00000470889.1	chr3	138340248:138340381:138341029:138341258:138347948:138347993,	138341030	138341258	138341217	138341217	Nonsense_Mutation	G	A	p.W100X
LGG	TCGA-HT-8110-01	FAIM	ENST00000491175.1	chr3	138340248:138340381:138341029:138341234:138347948:138347993,	138341030	138341234	138341217	138341217	Nonsense_Mutation	G	A	p.W100X
LGG	TCGA-DU-7299-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839582	62839582	Nonsense_Mutation	G	T	p.E345X
LGG	TCGA-QH-A65V-01	PSME3	ENST00000543428.1	chr17	40990109:40990222:40990747:40990816:40990961:40990993,40989665:40989714:40990747:40990816:40990961:40990993,	40990748	40990816	40990763	40990763	Nonsense_Mutation	C	T	p.Q152X
LGG	TCGA-QH-A65V-01	PSME3	ENST00000293362.3	chr17	40990109:40990222:40990708:40990816:40990961:40990993,	40990709	40990816	40990763	40990763	Nonsense_Mutation	C	T	p.Q152X
LGG	TCGA-DB-A4XF-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1,ENST00000378244.2	chr12	100649826:100650004:100656041:100656187:100660697:100660833,100649826:100650004:100656041:100656187:100657274:100657470,	100656042	100656187	100656178	100656178	Nonsense_Mutation	A	C	p.Y188X
LGG	TCGA-DU-8163-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30001004	30001004	Nonsense_Mutation	G	A	p.R1457X
LGG	TCGA-DU-6400-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90048483	90048483	Nonsense_Mutation	C	T	p.R92X
LGG	TCGA-DU-7292-01	WIF1	ENST00000286574.4	chr12	65456260:65456356:65460420:65460516:65461474:65461570,	65460421	65460516	65460502	65460502	Nonsense_Mutation	G	A	p.R217X
LGG	TCGA-DU-7298-01	XDH	ENST00000379416.3	chr2	31587023:31587110:31588322:31588410:31588841:31588975,	31588323	31588410	31588394	31588394	Nonsense_Mutation	G	A	p.R825X
LGG	TCGA-HT-7604-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
LGG	TCGA-HT-7604-01	GPBP1	ENST00000511209.1,ENST00000454432.2,ENST00000538707.1,ENST00000515484.2,ENST00000264779.6,ENST00000424459.3,ENST00000506184.2,ENST00000514387.2	chr5	56545283:56545403:56546780:56546968:56557006:56557065,	56546781	56546968	56546841	56546841	Nonsense_Mutation	C	T	p.R345X
LGG	TCGA-DB-A64R-01	KDM4C	ENST00000535193.1,ENST00000489243.1,ENST00000438023.1,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3,ENST00000401787.3	chr9	6792971:6793132:6805598:6805774:6814630:6814745,	6805599	6805774	6805637	6805637	Nonsense_Mutation	T	G	p.Y83X
LGG	TCGA-DU-A5TP-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551310	10551310	Nonsense_Mutation	G	T	p.E426X
LGG	TCGA-DU-A5TP-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938407	76938407	Nonsense_Mutation	G	A	p.R781X
LGG	TCGA-DB-A4XC-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579406	Nonsense_Mutation	G	C	p.S94X
LGG	TCGA-FG-8186-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394227	64394227	Nonsense_Mutation	C	T	p.R202X
LGG	TCGA-DU-6394-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128135074	128135074	Nonsense_Mutation	G	A	p.R238X
LGG	TCGA-FG-8182-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574012	7574012	Nonsense_Mutation	C	A	p.E339X
LGG	TCGA-DU-7006-01	TSNARE1	ENST00000524325.1,ENST00000520462.1,ENST00000518720.1,ENST00000307180.3,ENST00000520166.1	chr8	143425713:143425833:143427103:143427253:143435997:143436119,	143427104	143427253	143427185	143427185	Nonsense_Mutation	G	A	p.Q53X
LGG	TCGA-DU-7006-01	THOC2	ENST00000432353.1,ENST00000448128.1,ENST00000416618.1,ENST00000355725.4,ENST00000245838.8,ENST00000464992.2,ENST00000497887.1,ENST00000491737.1,ENST00000441692.1	chrX	122745350:122745367:122747249:122747407:122747489:122747559,	122747250	122747407	122747329	122747329	Nonsense_Mutation	G	C	p.S1533X
LGG	TCGA-HT-8104-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
LGG	TCGA-HT-8104-01	ASB7	ENST00000332783.7	chr15	101152370:101152632:101169641:101170247:101188527:101189738,	101169642	101170247	101170214	101170214	Nonsense_Mutation	C	T	p.R262X
LGG	TCGA-HT-8104-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924339	150924339	Nonsense_Mutation	G	A	p.R2117X
LGG	TCGA-CS-4943-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76814139:76814317:76829714:76829823:76845303:76845410,	76829715	76829823	76829760	76829760	Nonsense_Mutation	G	C	p.S2094X
LGG	TCGA-CS-6186-01	MYO5A	ENST00000399231.3,ENST00000358212.6,ENST00000399229.2,ENST00000399233.2,ENST00000356338.6,ENST00000553916.1	chr15	52620048:52620203:52622549:52622696:52628659:52628753,	52622550	52622696	52622646	52622646	Nonsense_Mutation	G	A	p.R1462X
LGG	TCGA-DH-5142-01	CCNG2	ENST00000316355.5,ENST00000502280.1,ENST00000497512.1,ENST00000395640.1,ENST00000354403.5,ENST00000509972.1	chr4	78080519:78080657:78081873:78082124:78082632:78082711,	78081874	78082124	78081991	78081991	Nonsense_Mutation	A	T	p.K132X
LGG	TCGA-HT-7856-01	MAST3	ENST00000262811.6	chr19	18246549:18246651:18248048:18248171:18249824:18249934,	18248049	18248171	18248097	18248097	Nonsense_Mutation	G	A	p.W645X
LGG	TCGA-HT-8013-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939235	76939235	Nonsense_Mutation	C	A	p.E505X
LGG	TCGA-HT-7483-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42049199	42049199	Nonsense_Mutation	G	A	p.R424X
LGG	TCGA-HW-8319-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
LGG	TCGA-HT-7610-01	SENP3	ENST00000582789.1	chr17	7473673:7473811:7473998:7474082:7474690:7474779,	7473999	7474082	7474041	7474041	Nonsense_Mutation	C	T	p.R508X
LGG	TCGA-HT-7610-01	TRIP12	ENST00000487178.1,ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230668286:230668405:230668714:230668943:230670445:230670518,	230668715	230668943	230668911	230668911	Nonsense_Mutation	G	A	p.R820X
LGG	TCGA-HT-A5R5-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937081	76937081	Nonsense_Mutation	C	A	p.E1223X
LGG	TCGA-HT-7882-01	EFCAB1	ENST00000262103.3	chr8	49643098:49643203:49643906:49644062:49647652:49647791,	49643907	49644062	49643961	49643961	Nonsense_Mutation	G	A	p.R54X
LGG	TCGA-DB-A64W-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17744930	17744930	Nonsense_Mutation	G	T	p.E725X
LGG	TCGA-CS-5390-01	UGGT2	ENST00000376747.3	chr13	96485180:96485307:96489339:96489456:96505796:96505911,	96489340	96489456	96489363	96489363	Nonsense_Mutation	G	A	p.Q1460X
LGG	TCGA-DU-6410-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5	chr12	70974815:70975082:70980786:70981047:70983743:70984013,	70980787	70981047	70980859	70980859	Nonsense_Mutation	G	A	p.R439X
LGG	TCGA-DU-6410-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101342	27101342	Nonsense_Mutation	G	T	p.E1542X
LGG	TCGA-P5-A5F1-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938788	76938788	Nonsense_Mutation	G	A	p.R654X
LGG	TCGA-CS-5395-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745373	135745373	Nonsense_Mutation	G	A	p.R357X
LGG	TCGA-HT-A615-01	DLG3	ENST00000194900.4,ENST00000374360.3,ENST00000463252.1	chrX	69669208:69669333:69669539:69669709:69670018:69670155,	69669540	69669709	69669655	69669655	Nonsense_Mutation	C	T	p.R217X
LGG	TCGA-HT-A618-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95911918:95912129:95914772:95914978:95918455:95918564,	95914773	95914978	95914959	95914959	Nonsense_Mutation	G	A	p.R585X
LGG	TCGA-HT-A614-01	FAAH2	ENST00000374900.4	chrX	57337025:57337162:57358030:57358240:57367703:57367823,	57358031	57358240	57358192	57358192	Nonsense_Mutation	C	T	p.R192X
LGG	TCGA-HT-A614-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938920	76938920	Nonsense_Mutation	G	A	p.Q610X
LGG	TCGA-P5-A5EZ-01	ELAVL2	ENST00000223951.6	chr9	23691808:23692882:23701376:23701602:23704915:23705069,	23701377	23701602	23701564	23701564	Nonsense_Mutation	G	A	p.R176X
LGG	TCGA-P5-A5EV-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937038	76937038	Nonsense_Mutation	G	C	p.S1237X
LGG	TCGA-DU-6402-01	NF1	ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29663350:29663491:29663652:29663932:29664385:29664600,	29663653	29663932	29663747	29663747	Nonsense_Mutation	T	G	p.L2060X
LGG	TCGA-HT-7620-01	CCT7	ENST00000398422.2,ENST00000258091.5,ENST00000540468.1,ENST00000538797.1,ENST00000539919.1,ENST00000537131.1	chr2	73477461:73477566:73478353:73478560:73479767:73480132,	73478354	73478560	73478419	73478419	Nonsense_Mutation	C	G	p.Y379X
LGG	TCGA-FG-6688-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098400	47098400	Nonsense_Mutation	G	A	p.Q2292X
LGG	TCGA-DU-5847-01	GMPR2	ENST00000558483.1	chr14	24706725:24706768:24707451:24707611:24707794:24707954,24706725:24706768:24707451:24707611:24707832:24708252,	24707452	24707611	24707610	24707610	Nonsense_Mutation	A	T	p.R304X
LGG	TCGA-HT-7603-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24769659:24769681:24788253:24788679:24800552:24803138,	24788254	24788679	24788379	24788379	Nonsense_Mutation	C	T	p.Q97X
LGG	TCGA-HT-7860-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16026364	16026364	Nonsense_Mutation	C	T	p.W78X
LGG	TCGA-DU-A5TS-01	PNP	ENST00000361505.5,ENST00000557229.1,ENST00000553418.1,ENST00000554056.1	chr14	20937572:20937694:20940466:20940636:20942630:20942730,	20940467	20940636	20940627	20940627	Nonsense_Mutation	C	T	p.R58X
LGG	TCGA-HT-7472-01	NCOA3	ENST00000371997.3	chr20	46266391:46266527:46267751:46267946:46268320:46268566,46266391:46266527:46267751:46267946:46268365:46268566,	46267752	46267946	46267764	46267764	Nonsense_Mutation	C	G	p.S842X
LGG	TCGA-HT-A617-01	PEA15	ENST00000368077.1	chr1	160175210:160175312:160181332:160181440:160182899:160183055,	160181333	160181440	160181386	160181386	Nonsense_Mutation	G	T	p.E18X
LGG	TCGA-HT-A616-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939697	76939697	Nonsense_Mutation	C	A	p.E351X
LGG	TCGA-HT-7470-01	SNX19	ENST00000533318.1,ENST00000530356.1,ENST00000265909.4,ENST00000528555.1,ENST00000539184.1,ENST00000545537.1,ENST00000534726.1	chr11	130749518:130749606:130750516:130750701:130773149:130773279,	130750517	130750701	130750571	130750571	Nonsense_Mutation	G	A	p.Q902X
LGG	TCGA-HT-7854-01	ABCA13	ENST00000453246.1,ENST00000435803.1	chr7	48494659:48494883:48506552:48506642:48511126:48511196,	48506553	48506642	48506641	48506641	Nonsense_Mutation	C	T	p.Q4302X
LGG	TCGA-FG-5964-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000380554.3	chr10	5141518:5141641:5144292:5144402:5144676:5144842,	5144293	5144402	5144389	5144389	Nonsense_Mutation	C	T	p.R223X
LGG	TCGA-HT-7694-01	RBBP8	ENST00000399722.2,ENST00000327155.5,ENST00000583057.1,ENST00000581687.1,ENST00000360790.5	chr18	20596799:20596887:20602091:20602233:20606105:20606333,	20602092	20602233	20602227	20602227	Nonsense_Mutation	G	A	p.W831X
LGG	TCGA-DB-5281-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76940083	76940083	Nonsense_Mutation	C	T	p.W222X
LGG	TCGA-HT-7602-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
LGG	TCGA-HT-7684-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103767	47103767	Nonsense_Mutation	G	C	p.S2060X
LGG	TCGA-HT-8564-01	DYNLRB1	ENST00000357156.2,ENST00000374846.3	chr20	33114076:33114148:33122431:33122599:33128384:33128762,	33122432	33122599	33122560	33122560	Nonsense_Mutation	C	T	p.R70X
LGG	TCGA-HT-8564-01	ADCY5	ENST00000466617.1,ENST00000462833.1,ENST00000309879.5,ENST00000491190.1	chr3	123033081:123033169:123036866:123036964:123038520:123038665,	123036867	123036964	123036943	123036943	Nonsense_Mutation	G	A	p.R760X
LGG	TCGA-HT-8564-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115581946:115582094:115590927:115591003:115594639:115594696,	115590928	115591003	115590971	115590971	Nonsense_Mutation	G	A	p.R91X
LGG	TCGA-DU-7290-01	ARID1B	ENST00000414678.2	chr6	157431605:157431695:157454161:157454341:157469757:157470085,157405899:157406039:157454161:157454341:157469757:157470085,	157454162	157454341	157454205	157454205	Nonsense_Mutation	T	A	p.Y792X
LGG	TCGA-DU-7290-01	ARID1B	ENST00000452544.1	chr6	157431605:157431695:157454173:157454341:157469757:157470085,	157454174	157454341	157454205	157454205	Nonsense_Mutation	T	A	p.Y792X
LGG	TCGA-HT-A614-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938920	76938920	Nonsense_Mutation	G	A	p.Q610*
LGG	TCGA-HT-A614-01	FAAH2	ENST00000374900.4	chrX	57337025:57337162:57358030:57358240:57367703:57367823,	57358031	57358240	57358192	57358192	Nonsense_Mutation	C	T	p.R192*
LGG	TCGA-HT-7604-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LGG	TCGA-HT-7604-01	GPBP1	ENST00000511209.1,ENST00000454432.2,ENST00000538707.1,ENST00000515484.2,ENST00000264779.6,ENST00000424459.3,ENST00000506184.2,ENST00000514387.2	chr5	56545283:56545403:56546780:56546968:56557006:56557065,	56546781	56546968	56546841	56546841	Nonsense_Mutation	C	T	p.R365*
LGG	TCGA-S9-A7IZ-01	RGS6	ENST00000434263.2,ENST00000556437.1,ENST00000553530.1,ENST00000555571.1,ENST00000404301.2,ENST00000402788.2,ENST00000406236.4,ENST00000554474.1,ENST00000407322.4,ENST00000554782.1,ENST00000553525.1,ENST00000355512.6	chr14	72961859:72961970:72976861:72976987:72985058:72985245,	72976862	72976987	72976895	72976895	Nonsense_Mutation	G	A	p.W333*
LGG	TCGA-DU-A7T8-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939375	76939375	Nonsense_Mutation	G	T	p.S458*
LGG	TCGA-P5-A5F1-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938788	76938788	Nonsense_Mutation	G	A	p.R654*
LGG	TCGA-S9-A6WP-01	ITGAX	ENST00000268296.4,ENST00000562522.1	chr16	31371257:31371386:31371630:31371784:31372383:31372534,	31371631	31371784	31371635	31371635	Nonsense_Mutation	C	T	p.R238*
LGG	TCGA-S9-A6WH-01	BAIAP3	ENST00000397488.2,ENST00000421665.2,ENST00000426824.3,ENST00000397489.1,ENST00000568887.1,ENST00000562208.1,ENST00000566162.1,ENST00000324385.5	chr16	1394969:1395100:1395249:1395373:1395747:1395891,	1395250	1395373	1395342	1395342	Nonsense_Mutation	G	A	p.W713*
LGG	TCGA-HT-7611-01	AGAP1	ENST00000409538.1,ENST00000336665.5,ENST00000304032.8,ENST00000402604.2,ENST00000409457.1	chr2	236617822:236617881:236626200:236626288:236649606:236649692,	236626201	236626288	236626276	236626276	Nonsense_Mutation	G	T	p.E365*
LGG	TCGA-HT-7611-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056286	27056286	Nonsense_Mutation	C	T	p.Q428*
LGG	TCGA-WY-A85D-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005421	150005421	Nonsense_Mutation	C	T	p.W268*
LGG	TCGA-HT-7620-01	CCT7	ENST00000398422.2,ENST00000258091.5,ENST00000540468.1,ENST00000538797.1,ENST00000539919.1,ENST00000537131.1	chr2	73477461:73477566:73478353:73478560:73479767:73480132,	73478354	73478560	73478419	73478419	Nonsense_Mutation	C	G	p.Y379*
LGG	TCGA-DB-A64P-01	KDM5B	ENST00000367265.3,ENST00000235790.4,ENST00000367264.2	chr1	202718072:202718267:202719786:202719906:202722032:202722195,	202719787	202719906	202719900	202719900	Nonsense_Mutation	G	A	p.R570*
LGG	TCGA-TQ-A8XE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LGG	TCGA-TQ-A8XE-02	WNK1	ENST00000537687.1,ENST00000530271.2,ENST00000574679.1	chr12	971400:971436:980430:980514:987380:987527,971400:971436:980430:980514:987377:987478,977733:978270:980430:980514:987377:987478,	980431	980514	980512	980512	Nonsense_Mutation	C	T	p.Q1154*
LGG	TCGA-TQ-A8XE-02	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LGG	TCGA-P5-A72Z-01	DIP2C	ENST00000280886.6,ENST00000381496.3	chr10	486810:486936:518378:518489:532398:532470,	518379	518489	518418	518418	Nonsense_Mutation	G	A	p.R77*
LGG	TCGA-DU-7292-01	WIF1	ENST00000286574.4	chr12	65456260:65456356:65460420:65460516:65461474:65461570,	65460421	65460516	65460502	65460502	Nonsense_Mutation	G	A	p.R217*
LGG	TCGA-S9-A6WQ-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961363	41961363	Nonsense_Mutation	C	T	p.R91*
LGG	TCGA-DU-6402-01	NF1	ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29663350:29663491:29663652:29663932:29664385:29664600,	29663653	29663932	29663747	29663747	Nonsense_Mutation	T	G	p.L2081*
LGG	TCGA-DU-6402-01	ACSM2A	ENST00000575558.1,ENST00000417235.2	chr16	20471428:20471613:20476838:20477049:20480833:20480867,20462932:20463003:20476838:20477049:20480833:20480867,	20476839	20477049	20476848	20476848	Nonsense_Mutation	C	T	p.R63*
LGG	TCGA-DB-5281-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76940083	76940083	Nonsense_Mutation	C	T	p.W222*
LGG	TCGA-DU-6400-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90048483	90048483	Nonsense_Mutation	C	T	p.R92*
LGG	TCGA-HT-7483-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42049199	42049199	Nonsense_Mutation	G	A	p.R424*
LGG	TCGA-S9-A7J2-01	HMGCS2	ENST00000476640.1	chr1	120301740:120301905:120302486:120302612:120306794:120307249,120299895:120300061:120302486:120302612:120306794:120307249,	120302487	120302612	120302572	120302572	Nonsense_Mutation	A	T	p.Y200*
LGG	TCGA-HT-A74J-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938029	76938029	Nonsense_Mutation	G	A	p.R907*
LGG	TCGA-HT-A74J-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LGG	TCGA-DU-5874-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000492616.1,ENST00000341723.4	chr7	92821566:92821676:92825140:92825214:92826553:92826591,	92825141	92825214	92825189	92825189	Nonsense_Mutation	G	T	p.S389*
LGG	TCGA-R8-A6MO-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516065	195516065	Nonsense_Mutation	G	A	p.R796*
LGG	TCGA-DU-7006-01	THOC2	ENST00000432353.1,ENST00000448128.1,ENST00000416618.1,ENST00000355725.4,ENST00000245838.8,ENST00000464992.2,ENST00000497887.1,ENST00000491737.1,ENST00000441692.1	chrX	122745350:122745367:122747249:122747407:122747489:122747559,	122747250	122747407	122747329	122747329	Nonsense_Mutation	G	C	p.S1533*
LGG	TCGA-DU-7006-01	PON1	ENST00000433729.1	chr7	94946045:94946101:94947634:94947705:94953713:94953788,	94947635	94947705	94947701	94947701	Nonsense_Mutation	G	A	p.R27*
LGG	TCGA-DU-7006-01	TSNARE1	ENST00000524325.1,ENST00000520462.1,ENST00000518720.1,ENST00000307180.3,ENST00000520166.1	chr8	143425713:143425833:143427103:143427253:143435997:143436119,	143427104	143427253	143427185	143427185	Nonsense_Mutation	G	A	p.Q53*
LGG	TCGA-WY-A85E-01	TACC1	ENST00000522904.1	chr8	38599868:38599969:38646221:38646337:38677039:38677140,38586157:38586189:38646221:38646337:38677039:38677140,38614850:38614927:38646221:38646337:38677039:38677140,	38646222	38646337	38646271	38646271	Nonsense_Mutation	C	T	p.R71*
LGG	TCGA-WY-A85E-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938297	76938297	Nonsense_Mutation	A	T	p.Y817*
LGG	TCGA-TM-A7CA-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
LGG	TCGA-DU-7298-01	XDH	ENST00000379416.3	chr2	31587023:31587110:31588322:31588410:31588841:31588975,	31588323	31588410	31588394	31588394	Nonsense_Mutation	G	A	p.R825*
LGG	TCGA-QH-A6CV-01	FLT4	ENST00000261937.6,ENST00000424276.2,ENST00000502649.1,ENST00000393347.3	chr5	180055927:180055999:180056258:180056427:180056695:180056835,	180056259	180056427	180056400	180056400	Nonsense_Mutation	G	A	p.R282*
LGG	TCGA-TQ-A7RK-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074772	31074772	Nonsense_Mutation	A	T	p.K358*
LGG	TCGA-TQ-A7RK-02	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074772	31074772	Nonsense_Mutation	A	T	p.K358*
LGG	TCGA-P5-A731-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4825499:4825604:4829630:4829823:4836748:4836871,	4829631	4829823	4829646	4829646	Nonsense_Mutation	C	T	p.R2196*
LGG	TCGA-DB-A4XC-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579406	Nonsense_Mutation	G	C	p.S94*
LGG	TCGA-QH-A870-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939354	76939354	Nonsense_Mutation	G	C	p.S465*
LGG	TCGA-RY-A845-01	PIGA	ENST00000333590.4,ENST00000463173.1,ENST00000542278.1,ENST00000428964.1,ENST00000482148.1	chrX	15339822:15339894:15342786:15342993:15343141:15343222,	15342787	15342993	15342872	15342872	Nonsense_Mutation	G	C	p.S368*
LGG	TCGA-DB-A4XF-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1,ENST00000378244.2	chr12	100649826:100650004:100656041:100656187:100660697:100660833,100649826:100650004:100656041:100656187:100657274:100657470,	100656042	100656187	100656178	100656178	Nonsense_Mutation	A	C	p.Y188*
LGG	TCGA-WH-A86K-01	DNMT3A	ENST00000402667.1,ENST00000321117.5,ENST00000470983.1,ENST00000496570.1,ENST00000380756.3,ENST00000264709.3,ENST00000380746.4	chr2	25469919:25470027:25470459:25470618:25470905:25471121,	25470460	25470618	25470556	25470556	Nonsense_Mutation	C	T	p.W306*
LGG	TCGA-WH-A86K-01	MICA	ENST00000449934.2	chr6	31378319:31378574:31378848:31379136:31379723:31379839,	31378849	31379136	31379100	31379100	Nonsense_Mutation	C	T	p.R193*
LGG	TCGA-WH-A86K-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7581050	7581050	Nonsense_Mutation	G	T	p.E1543*
LGG	TCGA-HT-7880-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937900	76937900	Nonsense_Mutation	T	A	p.K950*
LGG	TCGA-DU-6394-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128135074	128135074	Nonsense_Mutation	G	A	p.R159*
LGG	TCGA-CS-6290-01	PIH1D1	ENST00000596049.1	chr19	49954038:49954105:49954741:49954835:49956632:49956750,49954038:49954105:49954741:49954835:49956649:49956751,	49954742	49954835	49954795	49954795	Nonsense_Mutation	C	A	p.E13*
LGG	TCGA-CS-6290-01	PIH1D1	ENST00000597415.1	chr19	49954038:49954105:49954624:49954835:49956526:49956754,	49954625	49954835	49954795	49954795	Nonsense_Mutation	C	A	p.E13*
LGG	TCGA-CS-6290-01	PIH1D1	ENST00000601825.1	chr19	49954038:49954105:49954741:49954848:49956632:49956750,	49954742	49954848	49954795	49954795	Nonsense_Mutation	C	A	p.E13*
LGG	TCGA-KT-A74X-01	DHTKD1	ENST00000437298.1	chr10	12129533:12129728:12130984:12131254:12133511:12133642,12126538:12126750:12130984:12131254:12133511:12133642,	12130985	12131254	12131003	12131003	Nonsense_Mutation	C	T	p.R246*
LGG	TCGA-QH-A65X-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55209205:55209324:55211665:55211810:55212783:55213331,	55211666	55211810	55211767	55211767	Nonsense_Mutation	C	T	p.R342*
LGG	TCGA-DU-6410-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101342	27101342	Nonsense_Mutation	G	T	p.E1542*
LGG	TCGA-DU-6410-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5	chr12	70974815:70975082:70980786:70981047:70983743:70984013,	70980787	70981047	70980859	70980859	Nonsense_Mutation	G	A	p.R747*
LGG	TCGA-HT-7472-01	NCOA3	ENST00000371997.3	chr20	46266391:46266527:46267751:46267946:46268320:46268566,46266391:46266527:46267751:46267946:46268365:46268566,	46267752	46267946	46267764	46267764	Nonsense_Mutation	C	G	p.S842*
LGG	TCGA-HT-7471-01	ADCY10	ENST00000367851.4	chr1	167868660:167868866:167870899:167871043:167871253:167871292,	167870900	167871043	167870912	167870912	Nonsense_Mutation	G	A	p.R50*
LGG	TCGA-HT-7471-01	ADCY10	ENST00000367848.1	chr1	167868660:167868866:167870899:167871080:167871253:167871292,	167870900	167871080	167870912	167870912	Nonsense_Mutation	G	A	p.R50*
LGG	TCGA-HT-7610-01	SENP3	ENST00000582789.1	chr17	7473673:7473811:7473998:7474082:7474690:7474779,	7473999	7474082	7474041	7474041	Nonsense_Mutation	C	T	p.R507*
LGG	TCGA-HT-7610-01	TRIP12	ENST00000487178.1,ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230668286:230668405:230668714:230668943:230670445:230670518,	230668715	230668943	230668911	230668911	Nonsense_Mutation	G	A	p.R820*
LGG	TCGA-HW-7495-01	WDR26	ENST00000295024.6,ENST00000486652.1,ENST00000443112.2,ENST00000366852.2,ENST00000479778.1,ENST00000489825.1	chr1	224619226:224619283:224619383:224619483:224621385:224621540,	224619384	224619483	224619390	224619390	Nonsense_Mutation	C	T	p.W172*
LGG	TCGA-HW-7495-01	BAX	ENST00000391871.3,ENST00000415969.2,ENST00000293288.8,ENST00000345358.7,ENST00000502487.1,ENST00000503726.1,ENST00000513545.1	chr19	49458804:49458856:49459454:49459590:49464066:49464092,49458185:49458219:49459454:49459590:49464066:49464092,49458943:49459090:49459454:49459590:49464066:49464092,	49459455	49459590	49459501	49459501	Nonsense_Mutation	C	T	p.R94*
LGG	TCGA-HT-7694-01	RBBP8	ENST00000399722.2,ENST00000327155.5,ENST00000583057.1,ENST00000581687.1,ENST00000360790.5	chr18	20596799:20596887:20602091:20602233:20606105:20606333,	20602092	20602233	20602227	20602227	Nonsense_Mutation	G	A	p.W831*
LGG	TCGA-HT-7694-01	RAF1	ENST00000251849.4,ENST00000442415.2	chr3	12650731:12650834:12653448:12653561:12660013:12660246,	12653449	12653561	12653552	12653552	Nonsense_Mutation	G	A	p.R73*
LGG	TCGA-HT-7478-01	GNAO1	ENST00000262493.6	chr16	56385352:56385449:56388777:56388993:56390014:56391356,	56388778	56388993	56388962	56388962	Nonsense_Mutation	C	G	p.Y354*
LGG	TCGA-E1-A7YI-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
LGG	TCGA-E1-A7YI-01	CHD3	ENST00000439235.1,ENST00000470531.1,ENST00000481999.1,ENST00000358181.4,ENST00000330494.7,ENST00000380358.4	chr17	7812460:7812656:7814164:7814291:7814781:7815068,7813756:7813909:7814164:7814291:7814781:7815068,	7814165	7814291	7814264	7814264	Nonsense_Mutation	C	T	p.Q2011*
LGG	TCGA-S9-A7R4-01	SULT1A2	ENST00000533150.1	chr16	28603583:28603802:28606687:28606996:28607103:28607255,	28606688	28606996	28606753	28606753	Nonsense_Mutation	G	A	p.R103*
LGG	TCGA-TQ-A7RV-02	USP15	ENST00000550632.1,ENST00000280377.5,ENST00000549237.1,ENST00000393654.3,ENST00000353364.3,ENST00000312635.6,ENST00000548836.1	chr12	62696570:62696701:62708570:62708697:62715244:62715270,	62708571	62708697	62708580	62708580	Nonsense_Mutation	C	T	p.Q120*
LGG	TCGA-DU-5849-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17424835:17424912:17425146:17425198:17426742:17426804,	17425147	17425198	17425150	17425150	Nonsense_Mutation	C	T	p.R30*
LGG	TCGA-DH-5142-01	CCNG2	ENST00000316355.5,ENST00000502280.1,ENST00000497512.1,ENST00000395640.1,ENST00000354403.5,ENST00000509972.1	chr4	78080519:78080657:78081873:78082124:78082632:78082711,	78081874	78082124	78081991	78081991	Nonsense_Mutation	A	T	p.K132*
LGG	TCGA-HT-8104-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924339	150924339	Nonsense_Mutation	G	A	p.R2117*
LGG	TCGA-HT-8104-01	ASB7	ENST00000332783.7	chr15	101152370:101152632:101169641:101170247:101188527:101189738,	101169642	101170247	101170214	101170214	Nonsense_Mutation	C	T	p.R262*
LGG	TCGA-DB-A75K-01	TNFRSF11B	ENST00000297350.4	chr8	119938748:119938957:119940976:119941168:119945169:119945539,	119940977	119941168	119941085	119941085	Nonsense_Mutation	T	A	p.K162*
LGG	TCGA-HT-A5R5-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937081	76937081	Nonsense_Mutation	C	A	p.E1223*
LGG	TCGA-TQ-A7RG-01	CPNE3	ENST00000517490.1,ENST00000521271.1,ENST00000198765.4	chr8	87567078:87567212:87568329:87568566:87570515:87573639,	87568330	87568566	87568561	87568561	Nonsense_Mutation	C	T	p.Q496*
LGG	TCGA-TM-A84M-01	FUBP1	ENST00000421641.1,ENST00000370768.2,ENST00000294623.4,ENST00000436586.2,ENST00000370767.1	chr1	78432377:78432435:78432567:78432639:78432732:78432782,	78432568	78432639	78432598	78432598	Nonsense_Mutation	C	A	p.E129*
LGG	TCGA-QH-A6XC-01	TRAT1	ENST00000493604.1,ENST00000478830.1	chr3	108541618:108541781:108549516:108549627:108557780:108557814,	108549517	108549627	108549621	108549621	Nonsense_Mutation	C	T	p.R38*
LGG	TCGA-TM-A84G-01	SYAP1	ENST00000380155.3	chrX	16761823:16761963:16773067:16773216:16774785:16774844,	16773068	16773216	16773205	16773205	Nonsense_Mutation	T	A	p.L238*
LGG	TCGA-FG-5964-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000380554.3	chr10	5141518:5141641:5144292:5144402:5144676:5144842,	5144293	5144402	5144389	5144389	Nonsense_Mutation	C	T	p.R223*
LGG	TCGA-R8-A6MK-01	CCS	ENST00000530384.1,ENST00000310190.4,ENST00000533244.1	chr11	66366929:66367107:66367959:66368020:66372809:66372887,	66367960	66368020	66368006	66368006	Nonsense_Mutation	C	T	p.Q159*
LGG	TCGA-DU-A5TP-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938407	76938407	Nonsense_Mutation	G	A	p.R781*
LGG	TCGA-DU-A5TP-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833094	25833094	Nonsense_Mutation	C	T	p.R195*
LGG	TCGA-DU-A5TP-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551310	10551310	Nonsense_Mutation	G	T	p.E426*
LGG	TCGA-DB-A64S-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939874	76939874	Nonsense_Mutation	G	A	p.Q292*
LGG	TCGA-DB-A64R-01	KDM4C	ENST00000535193.1,ENST00000489243.1,ENST00000438023.1,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3,ENST00000401787.3	chr9	6792971:6793132:6805598:6805774:6814630:6814745,	6805599	6805774	6805637	6805637	Nonsense_Mutation	T	G	p.Y61*
LGG	TCGA-FG-8182-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574012	7574012	Nonsense_Mutation	C	A	p.E339*
LGG	TCGA-HT-7605-01	SH3BP5L	ENST00000366472.5,ENST00000411742.2,ENST00000475978.1	chr1	249105898:249106569:249107187:249107361:249108647:249108809,	249107188	249107361	249107313	249107313	Nonsense_Mutation	G	A	p.R196*
LGG	TCGA-P5-A5EW-01	ABCB7	ENST00000529949.1,ENST00000339447.4,ENST00000253577.3,ENST00000373394.3	chrX	74290199:74290357:74291343:74291518:74293523:74293611,	74291344	74291518	74291461	74291461	Nonsense_Mutation	C	A	p.E365*
LGG	TCGA-TQ-A7RH-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
LGG	TCGA-TQ-A7RH-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
LGG	TCGA-TQ-A7RH-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102566729:102566821:102603979:102604112:102608468:102608564,102572327:102572380:102603979:102604112:102608468:102608564,	102603980	102604112	102604004	102604004	Nonsense_Mutation	G	A	p.R234*
LGG	TCGA-DU-6407-02	SFI1	ENST00000495107.1,ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000432498.1,ENST00000417682.2,ENST00000382162.3,ENST00000540643.1	chr22	32009127:32009202:32009339:32009516:32009587:32009701,	32009340	32009516	32009401	32009401	Nonsense_Mutation	G	A	p.W845*
LGG	TCGA-DU-6407-02	CDHR1	ENST00000332904.3	chr10	85971934:85972163:85972846:85973104:85978834:85979377,	85972847	85973104	85973020	85973020	Nonsense_Mutation	G	A	p.W652*
LGG	TCGA-DU-6407-02	ENOSF1	ENST00000251101.7,ENST00000580605.1,ENST00000581475.1,ENST00000579053.1,ENST00000340116.7,ENST00000584453.1,ENST00000578651.1,ENST00000539164.1	chr18	694247:694334:697239:697355:706469:706538,	697240	697355	697251	697251	Nonsense_Mutation	G	A	p.Q100*
LGG	TCGA-DU-6407-02	GPAT2	ENST00000377137.3,ENST00000453542.1,ENST00000434632.1,ENST00000468438.1,ENST00000439254.1,ENST00000359548.4,ENST00000471757.1,ENST00000486463.1,ENST00000484440.1	chr2	96697008:96697082:96697780:96697894:96698044:96698113,	96697781	96697894	96697883	96697883	Nonsense_Mutation	C	T	p.W25*
LGG	TCGA-DU-6407-02	EPHA2	ENST00000358432.5	chr1	16455928:16456084:16456720:16456914:16458215:16458365,	16456721	16456914	16456828	16456828	Nonsense_Mutation	C	T	p.W854*
LGG	TCGA-DU-6407-02	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41191512	41191512	Nonsense_Mutation	C	T	p.Q166*
LGG	TCGA-DU-6407-02	SEMA3F	ENST00000002829.3,ENST00000450338.1	chr3	50192561:50192997:50197007:50197167:50211225:50211386,	50197008	50197167	50197082	50197082	Nonsense_Mutation	G	A	p.W9*
LGG	TCGA-DU-6407-02	TMEM108	ENST00000393130.3,ENST00000511388.1,ENST00000321871.6	chr3	133098595:133100005:133109023:133109178:133114707:133115036,	133109024	133109178	133109097	133109097	Nonsense_Mutation	G	A	p.W508*
LGG	TCGA-DU-6407-02	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335719	173335719	Nonsense_Mutation	C	T	p.Q221*
LGG	TCGA-DU-6407-02	CMAS	ENST00000538498.1,ENST00000229329.2,ENST00000534981.1	chr12	22208390:22208544:22211500:22211634:22213765:22213860,	22211501	22211634	22211561	22211561	Nonsense_Mutation	G	A	p.W207*
LGG	TCGA-DU-6407-02	CTNNA1	ENST00000540387.1,ENST00000518825.1,ENST00000355078.5,ENST00000521724.1,ENST00000302763.7	chr5	138240087:138240130:138253430:138253587:138260198:138260235,	138253431	138253587	138253513	138253513	Nonsense_Mutation	G	A	p.W491*
LGG	TCGA-DU-6407-02	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209806414:209806478:209807791:209807983:209811252:209811326,	209807792	209807983	209807852	209807852	Nonsense_Mutation	C	T	p.W168*
LGG	TCGA-TQ-A7RP-01	C9orf72	ENST00000379997.3,ENST00000379995.1,ENST00000461679.1,ENST00000380003.3,ENST00000488117.1	chr9	27562378:27562474:27565528:27565588:27566674:27567162,	27565529	27565588	27565531	27565531	Nonsense_Mutation	G	A	p.Q168*
LGG	TCGA-TQ-A7RP-01	LGALS13	ENST00000600141.1	chr19	40093176:40093223:40095830:40096028:40097862:40097899,	40095831	40096028	40095888	40095888	Nonsense_Mutation	C	T	p.R55*
LGG	TCGA-TQ-A7RP-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717741	89717741	Nonsense_Mutation	G	T	p.E256*
LGG	TCGA-TM-A84I-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888460:30888544:30890136:30890197:30890852:30890948,	30890137	30890197	30890140	30890140	Nonsense_Mutation	G	A	p.R139*
LGG	TCGA-HT-A74O-01	PHF20	ENST00000374000.4,ENST00000339089.6,ENST00000486408.1,ENST00000374012.3	chr20	34435271:34435356:34450934:34451322:34457359:34457473,34446223:34446303:34450934:34451322:34457359:34457473,	34450935	34451322	34451082	34451082	Nonsense_Mutation	C	T	p.R190*
LGG	TCGA-RY-A840-01	ACSM2B	ENST00000565232.1,ENST00000566384.1,ENST00000569344.1,ENST00000567001.1	chr16	20570629:20570769:20575990:20576175:20587528:20587599,20570629:20570769:20575990:20576175:20586743:20586778,	20575991	20576175	20576155	20576155	Nonsense_Mutation	G	A	p.R5*
LGG	TCGA-S9-A7QW-01	SAP130	ENST00000259235.3,ENST00000357702.5	chr2	128744358:128744536:128747137:128747440:128750760:128750882,	128747138	128747440	128747140	128747140	Nonsense_Mutation	G	C	p.S619*
LGG	TCGA-HT-A61C-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37287723:37287876:37289081:37289193:37291882:37292133,	37289082	37289193	37289163	37289163	Nonsense_Mutation	G	A	p.R539*
LGG	TCGA-F6-A8O3-01	FRG1	ENST00000514482.1	chr4	190862178:190862226:190864356:190864427:190873316:190873442,	190864357	190864427	190864382	190864382	Nonsense_Mutation	A	T	p.K30*
LGG	TCGA-S9-A7R8-01	MAPK15	ENST00000484654.1	chr8	144801512:144801652:144802399:144803010:144803400:144803526,	144802400	144803010	144802971	144802971	Nonsense_Mutation	T	G	p.L293*
LGG	TCGA-S9-A7R8-01	MAPK15	ENST00000338033.4	chr8	144802399:144802457:144802872:144803010:144803169:144803275,	144802873	144803010	144802971	144802971	Nonsense_Mutation	T	G	p.L293*
LGG	TCGA-S9-A7R1-01	GALNT12	ENST00000375011.3	chr9	101606377:101606491:101608258:101608405:101611233:101611916,	101608259	101608405	101608400	101608400	Nonsense_Mutation	C	T	p.Q534*
LGG	TCGA-HT-7602-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LGG	TCGA-HT-8018-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LGG	TCGA-HT-8018-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839768	62839768	Nonsense_Mutation	C	T	p.Q407*
LGG	TCGA-DU-7299-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839582	62839582	Nonsense_Mutation	G	T	p.E345*
LGG	TCGA-DU-A76R-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415889	86415889	Nonsense_Mutation	C	T	p.R261*
LGG	TCGA-P5-A5EZ-01	ELAVL2	ENST00000223951.6	chr9	23691808:23692882:23701376:23701602:23704915:23705069,	23701377	23701602	23701564	23701564	Nonsense_Mutation	G	A	p.R176*
LGG	TCGA-TM-A7C5-01	FAM172A	ENST00000509163.1,ENST00000504768.2,ENST00000506398.2,ENST00000505869.1,ENST00000395965.3	chr5	93300162:93300228:93386435:93386536:93388830:93388932,	93386436	93386536	93386527	93386527	Nonsense_Mutation	A	C	p.L73*
LGG	TCGA-FG-A87N-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818125	214818125	Nonsense_Mutation	A	T	p.K1738*
LGG	TCGA-TM-A84O-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157155	106157155	Nonsense_Mutation	A	T	p.R707*
LGG	TCGA-TM-A84O-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
LGG	TCGA-DU-7007-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4	chr8	121282273:121282413:121290349:121290473:121290673:121290817,	121290350	121290473	121290392	121290392	Nonsense_Mutation	A	T	p.K1086*
LGG	TCGA-DU-7007-01	CCDC33	ENST00000398814.3,ENST00000321288.5	chr15	74536343:74536489:74554780:74554914:74559018:74559128,	74554781	74554914	74554908	74554908	Nonsense_Mutation	C	T	p.Q308*
LGG	TCGA-S9-A7R2-01	CKMT1A	ENST00000413453.2,ENST00000434505.1	chr15	43990211:43990346:43990838:43990964:43991170:43991420,	43990839	43990964	43990947	43990947	Nonsense_Mutation	C	T	p.R374*
LGG	TCGA-HT-7882-01	EFCAB1	ENST00000262103.3	chr8	49643098:49643203:49643906:49644062:49647652:49647791,	49643907	49644062	49643961	49643961	Nonsense_Mutation	G	A	p.R54*
LGG	TCGA-S9-A7QY-01	LRP2BP	ENST00000510776.1,ENST00000362004.3,ENST00000328559.7,ENST00000505916.1	chr4	186295288:186295394:186295472:186295615:186296766:186296880,	186295473	186295615	186295495	186295495	Nonsense_Mutation	G	A	p.R153*
LGG	TCGA-S9-A7IY-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233710441:233710596:233712057:233712281:233714971:233715119,	233712058	233712281	233712219	233712219	Nonsense_Mutation	C	T	p.Q1230*
LGG	TCGA-CS-4943-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76814139:76814317:76829714:76829823:76845303:76845410,	76829715	76829823	76829760	76829760	Nonsense_Mutation	G	C	p.S2094*
LGG	TCGA-E1-A7YL-01	GAB2	ENST00000340149.2,ENST00000361507.4	chr11	77938002:77938097:77961202:77961446:77991646:77991947,	77961203	77961446	77961363	77961363	Nonsense_Mutation	G	A	p.R154*
LGG	TCGA-E1-A7Z4-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938562	76938562	Nonsense_Mutation	G	C	p.S729*
LGG	TCGA-E1-A7Z4-01	KIF27	ENST00000297814.2,ENST00000413982.1,ENST00000334204.2	chr9	86514575:86514719:86517974:86518933:86523366:86523567,	86517975	86518933	86518658	86518658	Nonsense_Mutation	C	A	p.E259*
LGG	TCGA-QH-A6X4-01	AACS	ENST00000441247.2,ENST00000316519.6,ENST00000261686.6,ENST00000316543.10	chr12	125599022:125599103:125603186:125603311:125609250:125609315,	125603187	125603311	125603203	125603203	Nonsense_Mutation	G	A	p.W338*
LGG	TCGA-DH-A7UU-01	ABCE1	ENST00000507193.1,ENST00000296577.4	chr4	146031526:146031596:146032119:146032216:146033390:146033480,	146032120	146032216	146032140	146032140	Nonsense_Mutation	C	T	p.R212*
LGG	TCGA-E1-A7YO-01	PSG9	ENST00000270077.3	chr19	43762353:43762608:43763008:43763287:43771935:43772301,43762353:43762608:43763008:43763287:43766011:43766290,	43763009	43763287	43763054	43763054	Nonsense_Mutation	G	A	p.R222*
LGG	TCGA-DB-A64U-01	C6orf136	ENST00000376471.4	chr6	30617691:30617736:30618770:30618859:30619042:30619092,30614962:30615080:30618770:30618859:30619042:30619092,	30618771	30618859	30618837	30618837	Nonsense_Mutation	G	T	p.E362*
LGG	TCGA-DB-A64U-01	C6orf136	ENST00000488383.1,ENST00000487873.1	chr6	30617691:30617736:30618770:30618877:30619042:30619092,	30618771	30618877	30618837	30618837	Nonsense_Mutation	G	T	p.E362*
LGG	TCGA-TM-A84L-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938326	76938326	Nonsense_Mutation	G	A	p.R808*
LGG	TCGA-DU-5852-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63059011:63059115:63064774:63064929:63065030:63065199,	63064775	63064929	63064782	63064782	Nonsense_Mutation	C	T	p.R17*
LGG	TCGA-CS-6186-01	MYO5A	ENST00000399231.3,ENST00000358212.6,ENST00000399229.2,ENST00000399233.2,ENST00000356338.6,ENST00000553916.1	chr15	52620048:52620203:52622549:52622696:52628659:52628753,	52622550	52622696	52622646	52622646	Nonsense_Mutation	G	A	p.R1462*
LGG	TCGA-CS-6186-01	SEC23B	ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000262544.2	chr20	18513307:18513388:18516296:18516386:18522939:18523046,	18516297	18516386	18516372	18516372	Nonsense_Mutation	G	T	p.E464*
LGG	TCGA-E1-A7YH-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909113	24909113	Nonsense_Mutation	G	A	p.R571*
LGG	TCGA-DU-A7T6-01	SLC35F5	ENST00000409342.1,ENST00000409106.1,ENST00000245680.2,ENST00000498768.1	chr2	114503853:114503916:114508001:114508145:114512741:114512883,	114508002	114508145	114508047	114508047	Nonsense_Mutation	C	T	p.W124*
LGG	TCGA-IK-8125-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832988	24832988	Nonsense_Mutation	A	T	p.K1280*
LGG	TCGA-S9-A6WG-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
LGG	TCGA-S9-A6WO-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579415	7579415	Nonsense_Mutation	C	T	p.W91*
LGG	TCGA-S9-A6WO-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939959	76939959	Nonsense_Mutation	C	T	p.W263*
LGG	TCGA-HT-A618-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95911918:95912129:95914772:95914978:95918455:95918564,	95914773	95914978	95914959	95914959	Nonsense_Mutation	G	A	p.R585*
LGG	TCGA-VM-A8C8-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938788	76938788	Nonsense_Mutation	G	A	p.R654*
LGG	TCGA-S9-A7R7-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76940000	76940000	Nonsense_Mutation	G	A	p.R250*
LGG	TCGA-E1-5307-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939496	76939496	Nonsense_Mutation	G	A	p.R418*
LGG	TCGA-S9-A7IX-01	BNC2	ENST00000484726.1,ENST00000380672.4,ENST00000380666.2	chr9	16582980:16583083:16727794:16727995:16870643:16870704,16582980:16583083:16727794:16727995:16738357:16738483,	16727795	16727995	16727916	16727916	Nonsense_Mutation	A	C	p.L70*
LGG	TCGA-P5-A736-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76814139:76814317:76829714:76829823:76845303:76845410,	76829715	76829823	76829760	76829760	Nonsense_Mutation	G	C	p.S2094*
LGG	TCGA-HT-8110-01	FAIM	ENST00000479848.1,ENST00000360570.3,ENST00000338446.4,ENST00000464668.1,ENST00000393035.2,ENST00000393034.2,ENST00000470889.1	chr3	138340248:138340381:138341029:138341258:138347948:138347993,	138341030	138341258	138341217	138341217	Nonsense_Mutation	G	A	p.W134*
LGG	TCGA-HT-8110-01	FAIM	ENST00000491175.1	chr3	138340248:138340381:138341029:138341234:138347948:138347993,	138341030	138341234	138341217	138341217	Nonsense_Mutation	G	A	p.W134*
LGG	TCGA-FG-6690-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939522	76939522	Nonsense_Mutation	A	T	p.L409*
LGG	TCGA-FG-6690-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LGG	TCGA-QH-A65V-01	PSME3	ENST00000543428.1	chr17	40990109:40990222:40990747:40990816:40990961:40990993,40989665:40989714:40990747:40990816:40990961:40990993,	40990748	40990816	40990763	40990763	Nonsense_Mutation	C	T	p.Q154*
LGG	TCGA-QH-A65V-01	PSME3	ENST00000293362.3	chr17	40990109:40990222:40990708:40990816:40990961:40990993,	40990709	40990816	40990763	40990763	Nonsense_Mutation	C	T	p.Q154*
LGG	TCGA-DB-5273-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939964	76939964	Nonsense_Mutation	G	A	p.Q262*
LGG	TCGA-DB-5273-01	RUFY1	ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1	chr5	179012796:179012866:179016546:179016648:179018625:179018742,	179016547	179016648	179016595	179016595	Nonsense_Mutation	C	T	p.Q359*
LGG	TCGA-FG-A6J3-01	SMYD4	ENST00000573937.1,ENST00000305513.7,ENST00000570368.1,ENST00000571854.1	chr17	1707919:1708009:1715264:1715409:1731154:1731300,	1715265	1715409	1715303	1715303	Nonsense_Mutation	C	A	p.E81*
LGG	TCGA-FG-A6J3-01	FCRL5	ENST00000361835.3,ENST00000368190.3,ENST00000368189.3	chr1	157516002:157516070:157516732:157516987:157519349:157519370,157514620:157514872:157516732:157516987:157519349:157519370,	157516733	157516987	157516958	157516958	Nonsense_Mutation	G	A	p.Q28*
LGG	TCGA-HT-7684-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103767	47103767	Nonsense_Mutation	G	C	p.S2060*
LGG	TCGA-HT-7684-01	IQGAP1	ENST00000559674.1,ENST00000560738.1,ENST00000268182.5,ENST00000561461.1	chr15	91030726:91030814:91034564:91034777:91035776:91035848,	91034565	91034777	91034589	91034589	Nonsense_Mutation	C	T	p.Q1425*
LGG	TCGA-DH-A7UR-01	N4BP2L2	ENST00000505213.1,ENST00000267068.3	chr13	33101600:33101669:33109905:33111164:33112754:33112821,	33109906	33111164	33111032	33111032	Nonsense_Mutation	T	A	p.R45*
LGG	TCGA-DH-A7UR-01	AREL1	ENST00000356357.4,ENST00000556202.1,ENST00000555330.1,ENST00000557401.1	chr14	75134021:75134080:75134167:75134297:75136351:75136477,	75134168	75134297	75134270	75134270	Nonsense_Mutation	G	A	p.Q648*
LGG	TCGA-HT-7603-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24769659:24769681:24788253:24788679:24800552:24803138,	24788254	24788679	24788379	24788379	Nonsense_Mutation	C	T	p.Q97*
LGG	TCGA-QH-A6CZ-01	CDKN2C	ENST00000396148.1,ENST00000262662.1	chr1	51434366:51435571:51436029:51436169:51439564:51440230,	51436030	51436169	51436140	51436140	Nonsense_Mutation	C	T	p.Q34*
LGG	TCGA-DU-8158-01	BTBD8	ENST00000342818.3	chr1	92604906:92604987:92606671:92606768:92612736:92612825,	92606672	92606768	92606709	92606709	Nonsense_Mutation	G	T	p.G291*
LGG	TCGA-DU-A7TJ-01	PFKL	ENST00000466134.1,ENST00000397961.2,ENST00000349048.4,ENST00000403390.1,ENST00000491298.1,ENST00000496824.1	chr21	45730888:45730966:45731987:45732177:45732860:45733026,	45731988	45732177	45732145	45732145	Nonsense_Mutation	G	A	p.W179*
LGG	TCGA-HT-8106-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
LGG	TCGA-HW-8319-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LGG	TCGA-E1-A7YN-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348857	89348857	Nonsense_Mutation	G	A	p.R1365*
LGG	TCGA-HT-A619-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985704	36985704	Nonsense_Mutation	C	T	p.R808*
LGG	TCGA-CS-6665-01	CD244	ENST00000322302.7	chr1	160808728:160808839:160811373:160811691:160832406:160832490,	160811374	160811691	160811431	160811431	Nonsense_Mutation	C	A	p.E108*
LGG	TCGA-CS-6665-01	GPR137B	ENST00000419162.1	chr1	236332005:236332055:236341713:236341936:236343178:236343328,236306067:236306336:236341713:236341936:236343178:236343328,	236341714	236341936	236341829	236341829	Nonsense_Mutation	C	T	p.R194*
LGG	TCGA-HT-7856-01	MAST3	ENST00000262811.6	chr19	18246549:18246651:18248048:18248171:18249824:18249934,	18248049	18248171	18248097	18248097	Nonsense_Mutation	G	A	p.W645*
LGG	TCGA-FG-7637-01	LIMA1	ENST00000552720.1,ENST00000552909.1,ENST00000552783.1,ENST00000552823.1,ENST00000341247.4,ENST00000394943.3	chr12	50594559:50594667:50598334:50598483:50599766:50599851,	50598335	50598483	50598436	50598436	Nonsense_Mutation	G	A	p.R255*
LGG	TCGA-S9-A6TW-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717661	89717661	Nonsense_Mutation	C	G	p.S229*
LGG	TCGA-S9-A89V-01	NF1	ENST00000471572.2,ENST00000444181.2	chr17	29664834:29664898:29665019:29665157:29665721:29665823,	29665020	29665157	29665041	29665041	Nonsense_Mutation	A	T	p.R28*
LGG	TCGA-S9-A89V-01	ARMC2	ENST00000392644.4,ENST00000368972.3	chr6	109285382:109285515:109286182:109286343:109294559:109294985,	109286183	109286343	109286254	109286254	Nonsense_Mutation	G	A	p.W786*
LGG	TCGA-DU-A76O-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938029	76938029	Nonsense_Mutation	G	A	p.R907*
LGG	TCGA-CS-5390-01	UGGT2	ENST00000376747.3	chr13	96485180:96485307:96489339:96489456:96505796:96505911,	96489340	96489456	96489363	96489363	Nonsense_Mutation	G	A	p.Q1460*
LGG	TCGA-HT-8109-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190411	72190411	Nonsense_Mutation	A	T	p.L1478*
LGG	TCGA-DU-8163-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30001004	30001004	Nonsense_Mutation	G	A	p.R1537*
LGG	TCGA-WY-A858-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
LGG	TCGA-DU-7011-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939496	76939496	Nonsense_Mutation	G	A	p.R418*
LGG	TCGA-TM-A84S-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101006	27101006	Nonsense_Mutation	C	T	p.Q1430*
LGG	TCGA-QH-A6CX-01	TTC22	ENST00000371276.4	chr1	55247997:55248150:55251655:55251817:55252629:55252748,	55251656	55251817	55251700	55251700	Nonsense_Mutation	G	A	p.R326*
LGG	TCGA-DB-5277-01	RPAP3	ENST00000380650.4,ENST00000551293.1	chr12	48095246:48095387:48096470:48096629:48099734:48099769,	48096471	48096629	48096531	48096531	Nonsense_Mutation	C	T	p.W31*
LGG	TCGA-TM-A7C3-01	IRF9	ENST00000396864.3,ENST00000561342.1	chr14	24633271:24633343:24633822:24634164:24635055:24635171,	24633823	24634164	24634044	24634044	Nonsense_Mutation	C	T	p.Q291*
LGG	TCGA-HT-A616-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939697	76939697	Nonsense_Mutation	C	A	p.E351*
LGG	TCGA-P5-A5EV-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937038	76937038	Nonsense_Mutation	G	C	p.S1237*
LGG	TCGA-HT-7689-01	FUT8	ENST00000360689.5,ENST00000394585.1,ENST00000342677.6	chr14	65922338:65922436:66028054:66028484:66082695:66082811,	66028055	66028484	66028460	66028460	Nonsense_Mutation	T	A	p.L60*
LGG	TCGA-FG-6688-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098400	47098400	Nonsense_Mutation	G	A	p.Q2292*
LGG	TCGA-FG-8186-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394227	64394227	Nonsense_Mutation	C	T	p.R202*
LGG	TCGA-FG-A4MW-01	STOML1	ENST00000359750.4,ENST00000566081.1,ENST00000562453.1,ENST00000565240.1,ENST00000316900.5,ENST00000561656.1,ENST00000541638.1	chr15	74281132:74281143:74281448:74281598:74282691:74282798,	74281449	74281598	74281475	74281475	Nonsense_Mutation	G	A	p.R122*
LGG	TCGA-FG-A4MW-01	STOML1	ENST00000567052.1	chr15	74281132:74281143:74281370:74281598:74282691:74282798,	74281371	74281598	74281475	74281475	Nonsense_Mutation	G	A	p.R122*
LGG	TCGA-DU-A5TS-01	PNP	ENST00000361505.5,ENST00000557229.1,ENST00000553418.1,ENST00000554056.1	chr14	20937572:20937694:20940466:20940636:20942630:20942730,	20940467	20940636	20940627	20940627	Nonsense_Mutation	C	T	p.R58*
LGG	TCGA-HT-8563-01	STK32B	ENST00000512018.1,ENST00000510398.1,ENST00000512636.1,ENST00000508728.1,ENST00000505508.1,ENST00000282908.5	chr4	5458533:5458650:5461829:5461955:5468429:5468561,	5461830	5461955	5461892	5461892	Nonsense_Mutation	C	G	p.Y282*
LGG	TCGA-HT-8563-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114070216	114070216	Nonsense_Mutation	G	A	p.Q164*
LGG	TCGA-S9-A6UB-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791696:42791879:42791961:42792127:42793039:42793242,	42791962	42792127	42792003	42792003	Nonsense_Mutation	G	A	p.W1178*
LGG	TCGA-HW-7493-01	MYO1B	ENST00000339514.4,ENST00000304164.4,ENST00000392318.3,ENST00000392316.1	chr2	192228883:192229002:192234267:192234354:192234952:192235018,	192234268	192234354	192234306	192234306	Nonsense_Mutation	C	G	p.Y357*
LGG	TCGA-DB-A64W-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17744930	17744930	Nonsense_Mutation	G	T	p.E881*
LGG	TCGA-TQ-A7RJ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
LGG	TCGA-DU-7290-01	ARID1B	ENST00000414678.2	chr6	157431605:157431695:157454161:157454341:157469757:157470085,157405899:157406039:157454161:157454341:157469757:157470085,	157454162	157454341	157454205	157454205	Nonsense_Mutation	T	A	p.Y805*
LGG	TCGA-DU-7290-01	ARID1B	ENST00000452544.1	chr6	157431605:157431695:157454173:157454341:157469757:157470085,	157454174	157454341	157454205	157454205	Nonsense_Mutation	T	A	p.Y805*
LGG	TCGA-HT-A617-01	PEA15	ENST00000368077.1	chr1	160175210:160175312:160181332:160181440:160182899:160183055,	160181333	160181440	160181386	160181386	Nonsense_Mutation	G	T	p.E39*
LGG	TCGA-QH-A6CY-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73957008	73957008	Nonsense_Mutation	C	A	p.G2113*
LGG	TCGA-DU-A7TD-01	PLCG2	ENST00000359376.3	chr16	81954802:81954874:81957089:81957199:81960686:81960783,	81957090	81957199	81957132	81957132	Nonsense_Mutation	C	T	p.R784*
LGG	TCGA-P5-A780-01	TRMT61B	ENST00000306108.5	chr2	29073193:29073271:29073937:29074164:29075273:29075365,	29073938	29074164	29074043	29074043	Nonsense_Mutation	C	A	p.G403*
LGG	TCGA-HT-8013-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939235	76939235	Nonsense_Mutation	C	A	p.E505*
LGG	TCGA-HT-7601-01	AOAH	ENST00000535891.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36561644:36561721:36570023:36570120:36571752:36571812,	36570024	36570120	36570027	36570027	Nonsense_Mutation	C	A	p.E507*
LGG	TCGA-HT-A615-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28*
LGG	TCGA-HT-A615-01	DLG3	ENST00000194900.4,ENST00000374360.3,ENST00000463252.1	chrX	69669208:69669333:69669539:69669709:69670018:69670155,	69669540	69669709	69669655	69669655	Nonsense_Mutation	C	T	p.R235*
LGG	TCGA-P5-A77W-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37304053:37304162:37306262:37306474:37310431:37310579,	37306263	37306474	37306396	37306396	Nonsense_Mutation	G	A	p.R69*
LGG	TCGA-DU-A7TA-01	TOP2B	ENST00000413971.1,ENST00000264331.4,ENST00000540199.1,ENST00000435706.2,ENST00000542520.1	chr3	25642590:25642716:25646250:25646361:25647533:25647613,	25646251	25646361	25646358	25646358	Nonsense_Mutation	G	C	p.S1456*
LGG	TCGA-DU-A7TA-01	WDR19	ENST00000512095.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3	chr4	39269614:39269711:39271595:39271720:39274599:39274681,	39271596	39271720	39271708	39271708	Nonsense_Mutation	T	A	p.Y1157*
LGG	TCGA-DH-A66D-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939841	76939841	Nonsense_Mutation	C	A	p.E303*
LGG	TCGA-DU-7018-01	KRTCAP3	ENST00000452499.1,ENST00000543753.1	chr2	27666318:27666399:27666815:27666928:27669167:27669346,	27666816	27666928	27666916	27666916	Nonsense_Mutation	G	A	p.W239*
LGG	TCGA-HT-7467-01	PCSK2	ENST00000470007.1,ENST00000262545.2,ENST00000377899.1	chr20	17240884:17240989:17338971:17339085:17341176:17341285,	17338972	17339085	17339014	17339014	Nonsense_Mutation	C	T	p.R109*
LGG	TCGA-HT-8564-01	ALMS1	ENST00000423048.1	chr2	73682288:73682422:73716760:73717285:73746901:73747143,	73716761	73717285	73717091	73717091	Nonsense_Mutation	C	T	p.R2668*
LGG	TCGA-HT-8564-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717091	73717091	Nonsense_Mutation	C	T	p.R2668*
LGG	TCGA-HT-8564-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115581946:115582094:115590927:115591003:115594639:115594696,	115590928	115591003	115590971	115590971	Nonsense_Mutation	G	A	p.R158*
LGG	TCGA-HT-8564-01	CELSR1	ENST00000262738.3	chr22	46774487:46774614:46776684:46776852:46777742:46777947,	46776685	46776852	46776725	46776725	Nonsense_Mutation	G	A	p.R2406*
LGG	TCGA-HT-8564-01	DYNLRB1	ENST00000357156.2,ENST00000374846.3	chr20	33114076:33114148:33122431:33122599:33128384:33128762,	33122432	33122599	33122560	33122560	Nonsense_Mutation	C	T	p.R70*
LGG	TCGA-HT-8564-01	ADCY5	ENST00000466617.1,ENST00000462833.1,ENST00000309879.5,ENST00000491190.1	chr3	123033081:123033169:123036866:123036964:123038520:123038665,	123036867	123036964	123036943	123036943	Nonsense_Mutation	G	A	p.R760*
LGG	TCGA-S9-A7IS-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53283812:53283978:53288349:53288517:53289511:53289691,	53288350	53288517	53288443	53288443	Nonsense_Mutation	C	T	p.R1319*
LGG	TCGA-E1-A7YE-01	NFE2L2	ENST00000464747.1,ENST00000586532.1,ENST00000397062.3,ENST00000397063.4,ENST00000421929.1,ENST00000448782.1	chr2	178096578:178096736:178097119:178097311:178097977:178098067,	178097120	178097311	178097223	178097223	Nonsense_Mutation	G	C	p.S164*
LGG	TCGA-E1-A7YE-01	NFE2L2	ENST00000446151.2	chr2	178096578:178096736:178097119:178097290:178097977:178098067,	178097120	178097290	178097223	178097223	Nonsense_Mutation	G	C	p.S164*
LGG	TCGA-CS-5395-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745373	135745373	Nonsense_Mutation	G	A	p.R357*
LGG	TCGA-HT-7681-01	KMT2D	ENST00000301067.7,ENST00000526209.1	chr12	49415825:49415934:49416062:49416136:49416372:49416658,	49416063	49416136	49416133	49416133	Nonsense_Mutation	G	A	p.R5448*
LGG	TCGA-CS-4941-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57*
LGG	TCGA-CS-4941-01	ABCG1	ENST00000361802.2,ENST00000398437.1,ENST00000472587.1,ENST00000340588.4	chr21	43706043:43706104:43707998:43708183:43708320:43708422,	43707999	43708183	43708163	43708163	Nonsense_Mutation	C	T	p.R526*
LGG	TCGA-DU-6392-01	MYL2	ENST00000548438.1	chr12	111351049:111351128:111351989:111352128:111356907:111356997,	111351990	111352128	111352092	111352092	Nonsense_Mutation	G	A	p.R58*
LGG	TCGA-DU-6392-01	ATRNL1	ENST00000355044.3	chr10	117027802:117027921:117040864:117040997:117045725:117045907,	117040865	117040997	117040979	117040979	Nonsense_Mutation	G	T	p.E739*
LGG	TCGA-DU-6392-01	CAPN13	ENST00000450650.1	chr2	30957314:30957390:30959368:30959495:30960027:30961159,	30959369	30959495	30959398	30959398	Nonsense_Mutation	G	A	p.R565*
LGG	TCGA-DU-6392-01	FBXO7	ENST00000425028.1,ENST00000492535.1	chr22	32871243:32871385:32875119:32875262:32879883:32879970,32871001:32871111:32875119:32875262:32879883:32879970,	32875120	32875262	32875191	32875191	Nonsense_Mutation	C	T	p.Q116*
LGG	TCGA-DU-6392-01	FBXO7	ENST00000397426.1	chr22	32871243:32871385:32874967:32875262:32879883:32879970,	32874968	32875262	32875191	32875191	Nonsense_Mutation	C	T	p.Q116*
LGG	TCGA-DU-6392-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3,ENST00000557265.1,ENST00000556712.1,ENST00000555416.1	chr14	35055435:35055511:35062250:35062356:35066755:35066851,	35062251	35062356	35062309	35062309	Nonsense_Mutation	A	C	p.Y104*
LGG	TCGA-DU-6392-01	PLOD2	ENST00000282903.5,ENST00000461497.1,ENST00000494950.1	chr3	145791073:145791139:145794568:145794682:145796902:145797044,145791073:145791139:145794568:145794682:145795648:145795711,	145794569	145794682	145794589	145794589	Nonsense_Mutation	G	A	p.Q553*
LGG	TCGA-DU-6392-01	YME1L1	ENST00000376016.3,ENST00000326799.3,ENST00000396296.3	chr10	27425204:27425314:27431315:27431414:27434356:27434519,	27431316	27431414	27431370	27431370	Nonsense_Mutation	G	A	p.R183*
LGG	TCGA-DU-6392-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233709078:233709284:233710441:233710596:233712057:233712209,	233710442	233710596	233710515	233710515	Nonsense_Mutation	G	T	p.G1149*
LGG	TCGA-DU-6392-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41366567:41366763:41371898:41372102:41373217:41373271,	41371899	41372102	41372072	41372072	Nonsense_Mutation	G	A	p.R320*
LGG	TCGA-DU-6392-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2,ENST00000451813.2	chr20	33632307:33632515:33637668:33637797:33642778:33642834,	33637669	33637797	33637791	33637791	Nonsense_Mutation	C	A	p.G179*
LGG	TCGA-DU-6392-01	OCRL	ENST00000357121.5,ENST00000371113.4	chrX	128722862:128722990:128723821:128723933:128724122:128724610,	128723822	128723933	128723882	128723882	Nonsense_Mutation	C	T	p.R844*
LGG	TCGA-DU-6392-01	YIPF1	ENST00000072644.1,ENST00000464950.2,ENST00000412288.1,ENST00000539954.1	chr1	54344314:54344395:54348785:54348949:54355385:54355406,54344314:54344395:54348785:54348949:54354579:54354659,	54348786	54348949	54348857	54348857	Nonsense_Mutation	C	A	p.G42*
LGG	TCGA-DU-6392-01	ITPKC	ENST00000263370.2	chr19	41231244:41231344:41235106:41235320:41239064:41239269,	41235107	41235320	41235124	41235124	Nonsense_Mutation	G	T	p.E425*
LGG	TCGA-DU-6392-01	RALBP1	ENST00000019317.4,ENST00000383432.3	chr18	9516842:9517301:9522157:9522507:9524591:9524753,	9522158	9522507	9522280	9522280	Nonsense_Mutation	G	T	p.E276*
LGG	TCGA-DU-6392-01	PPP2R3C	ENST00000555726.1,ENST00000553273.1,ENST00000555630.1,ENST00000261475.5,ENST00000557217.1,ENST00000554222.1,ENST00000554361.1,ENST00000555614.1	chr14	35568513:35568590:35576509:35576580:35577300:35577442,35568513:35568590:35576509:35576580:35577344:35577442,	35576510	35576580	35576557	35576557	Nonsense_Mutation	C	A	p.G176*
LGG	TCGA-DU-6392-01	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110086836	110086836	Nonsense_Mutation	C	T	p.R398*
LGG	TCGA-DU-6392-01	HGD	ENST00000492108.1	chr3	120347212:120347376:120351993:120352175:120357301:120357428,120347212:120347376:120351993:120352175:120360435:120360540,	120351994	120352175	120352051	120352051	Nonsense_Mutation	G	T	p.C377*
LGG	TCGA-DU-6392-01	PACRG	ENST00000366888.2,ENST00000366889.2,ENST00000541974.1	chr6	163483317:163483353:163510290:163510440:163735858:163736174,	163510291	163510440	163510401	163510401	Nonsense_Mutation	C	T	p.Q192*
LGG	TCGA-DU-6392-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072572	197072572	Nonsense_Mutation	C	A	p.G1937*
LGG	TCGA-DU-6392-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	7955118:7955412:8069683:8069992:8076452:8076562,	8069684	8069992	8069839	8069839	Nonsense_Mutation	C	T	p.R430*
LGG	TCGA-DU-6392-01	PPFIA2	ENST00000550359.2,ENST00000550584.2,ENST00000333447.7,ENST00000549396.1,ENST00000549325.1	chr12	81675035:81675211:81676788:81676818:81678019:81678082,81675035:81675211:81676788:81676818:81688613:81688814,81675116:81675229:81676788:81676818:81688613:81688814,81675116:81675229:81676788:81676818:81678019:81678082,	81676789	81676818	81676815	81676815	Nonsense_Mutation	C	A	p.E998*
LGG	TCGA-DU-6392-01	RIMBP2	ENST00000261655.4	chr12	130906997:130907106:130912723:130912882:130919278:130919421,	130912724	130912882	130912849	130912849	Nonsense_Mutation	C	A	p.E746*
LGG	TCGA-DU-6392-01	CAPN10	ENST00000391984.2,ENST00000270361.11,ENST00000494738.1,ENST00000404753.3	chr2	241535869:241535938:241536097:241536359:241537304:241537394,	241536098	241536359	241536168	241536168	Nonsense_Mutation	C	T	p.Q518*
LGG	TCGA-DU-6392-01	ZNHIT6	ENST00000370574.3,ENST00000431532.2	chr1	86171931:86172038:86172124:86172190:86173311:86173619,	86172125	86172190	86172138	86172138	Nonsense_Mutation	G	A	p.R198*
LGG	TCGA-DU-6392-01	ZNF791	ENST00000458122.3,ENST00000343325.4,ENST00000598225.1,ENST00000597691.1	chr19	12734513:12734640:12735463:12735524:12738534:12738619,	12735464	12735524	12735514	12735514	Nonsense_Mutation	C	T	p.R61*
LGG	TCGA-DU-6392-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182557	59182557	Nonsense_Mutation	C	A	p.E668*
LGG	TCGA-DU-6392-01	USF1	ENST00000496363.1,ENST00000534633.1,ENST00000368020.1,ENST00000368021.3,ENST00000435396.1,ENST00000473969.2	chr1	161011179:161011201:161011440:161011636:161011905:161012007,	161011441	161011636	161011486	161011486	Nonsense_Mutation	G	A	p.Q143*
LGG	TCGA-DU-6392-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805397	22805397	Nonsense_Mutation	G	A	p.R829*
LGG	TCGA-DU-6392-01	TRAPPC12	ENST00000417243.1,ENST00000441983.1,ENST00000382110.2,ENST00000324266.5,ENST00000457845.1	chr2	3425653:3425765:3428295:3428434:3447549:3447577,	3428296	3428434	3428406	3428406	Nonsense_Mutation	C	A	p.Y463*
LGG	TCGA-DU-6392-01	EPB41L4A	ENST00000261486.5	chr5	111545588:111545679:111570330:111570452:111575356:111575434,	111570331	111570452	111570340	111570340	Nonsense_Mutation	G	A	p.Q360*
LGG	TCGA-DU-6392-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000447967.2,ENST00000454282.1,ENST00000520850.1,ENST00000508762.1	chr5	72168494:72168547:72171441:72171564:72173054:72173173,	72171442	72171564	72171523	72171523	Nonsense_Mutation	C	T	p.R254*
LGG	TCGA-DU-6392-01	CEP57	ENST00000325542.5,ENST00000538658.1,ENST00000541365.1,ENST00000544522.1,ENST00000541150.1,ENST00000325486.5,ENST00000537677.1	chr11	95532400:95532552:95546095:95546275:95546631:95546684,	95546096	95546275	95546134	95546134	Nonsense_Mutation	C	T	p.R81*
LGG	TCGA-DU-6392-01	CEP57	ENST00000539855.1	chr11	95532400:95532552:95546067:95546275:95546631:95546684,	95546068	95546275	95546134	95546134	Nonsense_Mutation	C	T	p.R81*
LGG	TCGA-DU-6392-01	CEP57	ENST00000540830.1	chr11	95532395:95532552:95546115:95546275:95546631:95546684,	95546116	95546275	95546134	95546134	Nonsense_Mutation	C	T	p.R81*
LGG	TCGA-DU-6392-01	PHF14	ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11068307:11068445:11075266:11075413:11076044:11076315,	11075267	11075413	11075411	11075411	Nonsense_Mutation	C	T	p.Q534*
LGG	TCGA-DU-6392-01	PLB1	ENST00000444257.1,ENST00000327757.5,ENST00000473272.1,ENST00000411743.1,ENST00000404858.1,ENST00000541605.1,ENST00000422425.2	chr2	28843745:28843845:28847923:28847975:28849294:28849375,	28847924	28847975	28847958	28847958	Nonsense_Mutation	C	T	p.R1177*
LGG	TCGA-DU-6392-01	TBC1D8	ENST00000376840.4,ENST00000409318.1	chr2	101645952:101646238:101648729:101648847:101650005:101650220,	101648730	101648847	101648805	101648805	Nonsense_Mutation	C	A	p.E621*
LGG	TCGA-DU-6392-01	NPRL2	ENST00000480296.1	chr3	50385591:50385672:50385747:50385841:50385957:50385994,50385591:50385672:50385747:50385841:50385953:50386213,	50385748	50385841	50385824	50385824	Nonsense_Mutation	G	T	p.C246*
LGG	TCGA-DU-6392-01	GTF2F1	ENST00000598607.1,ENST00000595047.1,ENST00000394456.5	chr19	6387515:6387570:6389454:6389648:6391912:6391963,	6389455	6389648	6389587	6389587	Nonsense_Mutation	G	T	p.S65*
LGG	TCGA-DU-6392-01	GID8	ENST00000266069.3	chr20	61574338:61574535:61574846:61575044:61576090:61576996,	61574847	61575044	61574940	61574940	Nonsense_Mutation	C	T	p.R137*
LGG	TCGA-DU-6392-01	COPS6	ENST00000426712.1,ENST00000474823.1,ENST00000303904.3,ENST00000418625.1	chr7	99688214:99688277:99688524:99688572:99688660:99688775,	99688525	99688572	99688570	99688570	Nonsense_Mutation	G	T	p.E178*
LGG	TCGA-DU-6392-01	MRPL39	ENST00000419219.1,ENST00000307301.7	chr21	26976107:26976247:26978760:26978967:26979714:26979796,	26978761	26978967	26978878	26978878	Nonsense_Mutation	G	A	p.Q55*
LGG	TCGA-DU-6392-01	DOCK7	ENST00000404627.2,ENST00000340370.5	chr1	63119654:63119830:63128695:63128801:63153897:63153953,	63128696	63128801	63128776	63128776	Nonsense_Mutation	G	A	p.Q22*
LGG	TCGA-DU-6392-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77304814:77304891:77305240:77305568:77305708:77305818,	77305241	77305568	77305273	77305273	Nonsense_Mutation	C	A	p.E232*
LGG	TCGA-DU-6392-01	AKAP7	ENST00000543815.1	chr6	131486220:131486357:131490252:131490413:131520600:131520713,131486220:131486357:131490252:131490413:131540800:131540890,	131490253	131490413	131490380	131490380	Nonsense_Mutation	G	T	p.G186*
LGG	TCGA-DU-6392-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453068	195453068	Nonsense_Mutation	G	T	p.E361*
LGG	TCGA-DU-6392-01	LARP1B	ENST00000264584.5,ENST00000508819.1	chr4	129003319:129003460:129012155:129012299:129012501:129012667,128998995:128999117:129012155:129012299:129012501:129012667,	129012156	129012299	129012278	129012278	Nonsense_Mutation	C	T	p.R161*
LGG	TCGA-DU-6392-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086935	109086935	Nonsense_Mutation	G	T	p.E384*
LGG	TCGA-DU-6392-01	MAMLD1	ENST00000262858.5,ENST00000370401.2,ENST00000426613.2	chrX	149639693:149639762:149671543:149671787:149678231:149678316,149641951:149642074:149671543:149671787:149678231:149678316,	149671544	149671787	149671607	149671607	Nonsense_Mutation	C	T	p.Q702*
LGG	TCGA-DU-6392-01	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31137485	31137485	Nonsense_Mutation	G	A	p.R568*
LGG	TCGA-DU-6392-01	RABL6	ENST00000436380.1,ENST00000311502.7,ENST00000432842.2,ENST00000357466.2,ENST00000484471.2,ENST00000425121.1,ENST00000371671.4,ENST00000371663.4,ENST00000464941.1	chr9	139720234:139720278:139722945:139722998:139723844:139723936,	139722946	139722998	139722960	139722960	Nonsense_Mutation	C	T	p.R110*
LGG	TCGA-DU-6392-01	DNM2	ENST00000587830.2,ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000585892.1,ENST00000359692.6,ENST00000591701.1	chr19	10897239:10897382:10904395:10904531:10906047:10906115,	10904396	10904531	10904445	10904445	Nonsense_Mutation	G	T	p.G348*
LGG	TCGA-DU-6392-01	POLD3	ENST00000532497.1,ENST00000263681.2,ENST00000527458.1,ENST00000524752.1	chr11	74336548:74336618:74340261:74340368:74345627:74345740,	74340262	74340368	74340269	74340269	Nonsense_Mutation	C	T	p.R303*
LGG	TCGA-DU-6392-01	BIN1	ENST00000351659.3,ENST00000357970.3,ENST00000316724.5	chr2	127821508:127821594:127825738:127825831:127826499:127826607,	127825739	127825831	127825747	127825747	Nonsense_Mutation	G	A	p.R202*
LGG	TCGA-DU-6392-01	ASAP1	ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131104218:131104389:131124339:131124568:131127873:131127981,	131124340	131124568	131124478	131124478	Nonsense_Mutation	C	A	p.G755*
LGG	TCGA-DU-6392-01	GRAMD1C	ENST00000440446.2,ENST00000472026.1,ENST00000462838.1,ENST00000452134.2,ENST00000358160.4,ENST00000479212.1	chr3	113653333:113653382:113655112:113655289:113656932:113656990,	113655113	113655289	113655184	113655184	Nonsense_Mutation	C	T	p.R510*
LGG	TCGA-DU-6392-01	SMC3	ENST00000361804.4	chr10	112361723:112361936:112362231:112362423:112362582:112362760,	112362232	112362423	112362340	112362340	Nonsense_Mutation	G	T	p.E1072*
LGG	TCGA-DU-6392-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77264598:77264760:77266672:77266749:77266945:77267171,	77266673	77266749	77266736	77266736	Nonsense_Mutation	C	T	p.R645*
LGG	TCGA-DU-6392-01	DIS3L2	ENST00000433430.1,ENST00000325385.7,ENST00000409307.1,ENST00000434477.1,ENST00000445090.1,ENST00000390005.5	chr2	233199078:233199209:233199340:233199445:233200482:233200584,	233199341	233199445	233199425	233199425	Nonsense_Mutation	C	T	p.Q792*
LGG	TCGA-DU-6392-01	OCIAD1	ENST00000510824.1	chr4	48833243:48833266:48834636:48834778:48835417:48835446,	48834637	48834778	48834663	48834663	Nonsense_Mutation	C	T	p.R8*
LGG	TCGA-DU-6392-01	OCIAD1	ENST00000505922.2,ENST00000509122.1	chr4	48833243:48833266:48834636:48834699:48835417:48835446,48833243:48833513:48834636:48834699:48835417:48835446,48833025:48833069:48834636:48834699:48844652:48844706,	48834637	48834699	48834663	48834663	Nonsense_Mutation	C	T	p.R8*
LGG	TCGA-DU-6392-01	RNF14	ENST00000394514.2	chr5	141354368:141354520:141357867:141358395:141359687:141359842,141353147:141353307:141357867:141358395:141359687:141359842,	141357868	141358395	141357958	141357958	Nonsense_Mutation	G	T	p.E133*
LGG	TCGA-DU-6392-01	SEC11A	ENST00000558196.1,ENST00000560266.1,ENST00000560409.1,ENST00000455959.3,ENST00000268220.7,ENST00000558134.1	chr15	85213955:85214013:85230855:85231005:85234765:85234875,85223977:85224063:85230855:85231005:85234765:85234875,	85230856	85231005	85230935	85230935	Nonsense_Mutation	G	A	p.R78*
LGG	TCGA-DU-6392-01	ITM2A	ENST00000469541.1	chrX	78618438:78618636:78618919:78619051:78622353:78622424,	78618920	78619051	78619024	78619024	Nonsense_Mutation	C	A	p.E47*
LGG	TCGA-DU-6392-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000461981.1,ENST00000473565.1,ENST00000409403.2	chr2	201722440:201722607:201722695:201722812:201724402:201724469,	201722696	201722812	201722764	201722764	Nonsense_Mutation	G	T	p.Y241*
LGG	TCGA-DU-6392-01	TYW1	ENST00000359626.5,ENST00000495971.1,ENST00000361660.4	chr7	66532271:66532390:66548416:66548526:66563527:66563705,	66548417	66548526	66548517	66548517	Nonsense_Mutation	C	T	p.Q459*
LGG	TCGA-DU-6392-01	DRG1	ENST00000416465.1	chr22	31795618:31795711:31796605:31796729:31799014:31799190,31795618:31795711:31796605:31796729:31806997:31807046,	31796606	31796729	31796681	31796681	Nonsense_Mutation	C	T	p.R40*
LGG	TCGA-DU-6392-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20119122:20119291:20122482:20122718:20124800:20124955,	20122483	20122718	20122653	20122653	Nonsense_Mutation	C	T	p.R2121*
LGG	TCGA-DU-6392-01	MAPK8IP1	ENST00000241014.2,ENST00000395629.2	chr11	45925539:45925712:45926005:45926115:45926268:45926385,	45926006	45926115	45926110	45926110	Nonsense_Mutation	C	T	p.Q581*
LGG	TCGA-DU-6392-01	GPCPD1	ENST00000481690.1,ENST00000379019.4,ENST00000481038.1	chr20	5559025:5559257:5560653:5560777:5564926:5564968,	5560654	5560777	5560710	5560710	Nonsense_Mutation	A	C	p.Y139*
LGG	TCGA-DU-6392-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296419	101296419	Nonsense_Mutation	G	A	p.R136*
LGG	TCGA-DU-6392-01	TGFBR1	ENST00000549766.1,ENST00000552516.1	chr9	101891144:101891382:101894778:101895021:101900140:101900346,	101894779	101895021	101894964	101894964	Nonsense_Mutation	G	T	p.E173*
LGG	TCGA-DU-6392-01	TGFBR1	ENST00000374994.4,ENST00000550253.1	chr9	101891144:101891382:101894790:101895021:101900140:101900346,	101894791	101895021	101894964	101894964	Nonsense_Mutation	G	T	p.E173*
LGG	TCGA-DU-6392-01	NDUFA10	ENST00000307300.4,ENST00000444548.1,ENST00000419408.1,ENST00000404554.1,ENST00000485344.2,ENST00000448880.1,ENST00000476216.1,ENST00000252711.2	chr2	240929492:240929599:240944626:240944712:240946732:240946787,	240944627	240944712	240944661	240944661	Nonsense_Mutation	G	A	p.Q286*
LGG	TCGA-DU-6392-01	RBM28	ENST00000223073.2,ENST00000415472.2	chr7	127964660:127964747:127965870:127965944:127970871:127970981,	127965871	127965944	127965879	127965879	Nonsense_Mutation	C	A	p.E399*
LGG	TCGA-DU-6392-01	ERC1	ENST00000589028.1,ENST00000355446.5,ENST00000536573.2,ENST00000546231.2,ENST00000538971.2,ENST00000360905.4,ENST00000543086.3,ENST00000545948.1,ENST00000542302.2,ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1289705:1289843:1291090:1291231:1292446:1292587,	1291091	1291231	1291148	1291148	Nonsense_Mutation	G	T	p.E645*
LGG	TCGA-DU-6392-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98524789:98524989:98527611:98527829:98528255:98528453,	98527612	98527829	98527692	98527692	Nonsense_Mutation	G	T	p.G1086*
LGG	TCGA-DU-6392-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10625004:10625032:10625510:10625627:10625790:10625904,	10625511	10625627	10625533	10625533	Nonsense_Mutation	C	T	p.W774*
LGG	TCGA-DU-6392-01	ZIC4	ENST00000525172.2,ENST00000473123.1,ENST00000484399.1,ENST00000425731.3,ENST00000383075.3	chr3	147108717:147109033:147113638:147114256:147120514:147120599,	147113639	147114256	147113651	147113651	Nonsense_Mutation	G	A	p.R226*
LGG	TCGA-DU-6392-01	DNAJC6	ENST00000494710.2,ENST00000263441.7,ENST00000395325.3,ENST00000371069.4	chr1	65831747:65831879:65845084:65845207:65849875:65850009,	65845085	65845207	65845091	65845091	Nonsense_Mutation	G	T	p.E127*
LGG	TCGA-DU-6392-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38123492:38126718:38128842:38129056:38132027:38132142,	38128843	38129056	38128859	38128859	Nonsense_Mutation	G	A	p.R665*
LGG	TCGA-DU-6392-01	ACAD10	ENST00000508303.1,ENST00000455480.2,ENST00000549590.1,ENST00000552177.1,ENST00000413681.3,ENST00000313698.4,ENST00000392636.2	chr12	112171726:112171872:112174634:112174808:112182446:112182752,	112174635	112174808	112174796	112174796	Nonsense_Mutation	C	T	p.R599*
LGG	TCGA-DU-6392-01	HNRNPDL	ENST00000502762.1,ENST00000602300.1,ENST00000295470.5,ENST00000507721.1,ENST00000514511.1	chr4	83347189:83347282:83347615:83347786:83348342:83348344,	83347616	83347786	83347637	83347637	Nonsense_Mutation	G	A	p.Q391*
LGG	TCGA-DU-6392-01	NFX1	ENST00000379521.4,ENST00000318524.6	chr9	33290542:33290595:33294417:33295425:33301260:33301419,	33294418	33295425	33295380	33295380	Nonsense_Mutation	C	T	p.R330*
LGG	TCGA-DU-6392-01	ABHD1	ENST00000448950.1,ENST00000316470.4	chr2	27346707:27346930:27351308:27351469:27351812:27351995,	27351309	27351469	27351333	27351333	Nonsense_Mutation	C	T	p.Q47*
LGG	TCGA-DU-6392-01	RPS6KC1	ENST00000490299.1	chr1	213251037:213251158:213277795:213277911:213290658:213290752,213251037:213251158:213277795:213277911:213302869:213303232,	213277796	213277911	213277798	213277798	Nonsense_Mutation	C	T	p.R89*
LGG	TCGA-DU-6392-01	MOGAT3	ENST00000440203.2,ENST00000379423.3	chr7	100843514:100843585:100843688:100843796:100844026:100844084,	100843689	100843796	100843729	100843729	Nonsense_Mutation	G	T	p.Y59*
LGG	TCGA-DU-6392-01	ABCC12	ENST00000448542.1,ENST00000311303.3,ENST00000416054.1	chr16	48119503:48119617:48120651:48120730:48121850:48121996,48119503:48119617:48120651:48120730:48121836:48121996,	48120652	48120730	48120675	48120675	Nonsense_Mutation	C	A	p.E1231*
LGG	TCGA-DU-6392-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831193	58831193	Nonsense_Mutation	C	T	p.R796*
LGG	TCGA-DU-6392-01	TBX1	ENST00000329705.7,ENST00000332710.4,ENST00000359500.3	chr22	19750763:19750865:19751677:19751849:19752480:19752636,	19751678	19751849	19751790	19751790	Nonsense_Mutation	C	T	p.Q209*
LGG	TCGA-DU-6392-01	PLA2G4C	ENST00000599111.1,ENST00000594790.1,ENST00000599921.1,ENST00000413144.2	chr19	48551599:48551645:48556253:48556404:48558134:48558306,	48556254	48556404	48556297	48556297	Nonsense_Mutation	C	A	p.E513*
LGG	TCGA-DU-6392-01	PLA2G4C	ENST00000354276.3	chr19	48551599:48551645:48556210:48556404:48558134:48558306,	48556211	48556404	48556297	48556297	Nonsense_Mutation	C	A	p.E513*
LGG	TCGA-DU-6392-01	ARL6IP6	ENST00000463690.1,ENST00000495469.1,ENST00000326446.5,ENST00000425034.1	chr2	153577046:153577100:153591507:153591640:153616260:153616365,	153591508	153591640	153591515	153591515	Nonsense_Mutation	G	A	p.W154*
LGG	TCGA-DU-6392-01	UBA3	ENST00000349511.4,ENST00000361055.4	chr3	69112589:69112654:69120685:69120768:69124580:69124661,69117078:69117159:69120685:69120768:69126948:69127069,69117078:69117159:69120685:69120768:69124580:69124661,	69120686	69120768	69120750	69120750	Nonsense_Mutation	G	A	p.Q95*
LGG	TCGA-DU-6392-01	ADSL	ENST00000342312.6	chr22	40742535:40742715:40745835:40746039:40749076:40749121,	40745836	40746039	40745935	40745935	Nonsense_Mutation	C	T	p.R85*
LGG	TCGA-DU-6392-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000468338.1,ENST00000394872.2,ENST00000334504.7	chrX	107464469:107464604:107553977:107554058:107681171:107681223,	107553978	107554058	107554055	107554055	Nonsense_Mutation	C	A	p.E23*
LGG	TCGA-DU-6392-01	CLCN2	ENST00000434054.2,ENST00000457512.1,ENST00000344937.7,ENST00000265593.4	chr3	184072691:184072761:184073161:184073317:184073481:184073566,	184073162	184073317	184073305	184073305	Nonsense_Mutation	C	A	p.E395*
LGG	TCGA-DU-6392-01	PDPR	ENST00000398122.3,ENST00000564563.1,ENST00000569042.1,ENST00000567046.1,ENST00000542659.1,ENST00000563930.1,ENST00000288050.4,ENST00000568530.1	chr16	70182366:70182456:70187293:70187476:70190377:70190517,	70187294	70187476	70187441	70187441	Nonsense_Mutation	G	T	p.E734*
LGG	TCGA-DU-6392-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60501579:60501671:60503659:60504015:60505148:60505198,	60503660	60504015	60504004	60504004	Nonsense_Mutation	C	T	p.R183*
LGG	TCGA-DU-6392-01	SLC39A5	ENST00000454355.2,ENST00000266980.4	chr12	56628940:56629110:56629343:56629484:56630179:56630276,	56629344	56629484	56629383	56629383	Nonsense_Mutation	G	T	p.E282*
LGG	TCGA-DU-6392-01	NRG1	ENST00000338921.4,ENST00000287842.3,ENST00000405005.3,ENST00000518206.1,ENST00000522569.1,ENST00000356819.4,ENST00000521670.1,ENST00000523534.1,ENST00000341377.5,ENST00000523079.1	chr8	32472031:32472082:32474352:32474403:32585466:32585596,	32474353	32474403	32474382	32474382	Nonsense_Mutation	G	T	p.E161*
LGG	TCGA-DU-6392-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6,ENST00000494025.1,ENST00000476689.1	chr2	84800590:84800711:84804380:84804532:84806650:84806803,	84804381	84804532	84804521	84804521	Nonsense_Mutation	C	T	p.R689*
LGG	TCGA-DU-6392-01	MMP19	ENST00000547685.1,ENST00000548629.1,ENST00000394182.1,ENST00000322569.4,ENST00000552872.1	chr12	56230899:56231158:56231338:56231466:56231626:56231737,	56231339	56231466	56231369	56231369	Nonsense_Mutation	C	T	p.W100*
LGG	TCGA-DU-6392-01	CCDC107	ENST00000327351.2	chr9	35660561:35660644:35660762:35660855:35660936:35661174,	35660763	35660855	35660849	35660849	Nonsense_Mutation	G	T	p.E173*
LGG	TCGA-DU-6392-01	CCDC107	ENST00000378409.3	chr9	35660561:35660644:35660742:35660855:35660936:35661174,	35660743	35660855	35660849	35660849	Nonsense_Mutation	G	T	p.E173*
LGG	TCGA-DU-6392-01	CREB1	ENST00000353267.3,ENST00000430624.1,ENST00000432329.2,ENST00000448277.1	chr2	208434902:208435045:208439995:208440178:208442228:208442355,	208439996	208440178	208440061	208440061	Nonsense_Mutation	C	T	p.Q205*
LGG	TCGA-DU-6392-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417586	40417586	Nonsense_Mutation	C	T	p.Q358*
LGG	TCGA-DU-6392-01	ETFDH	ENST00000307738.5,ENST00000511912.1	chr4	159620138:159620282:159624574:159624743:159627340:159627523,	159624575	159624743	159624692	159624692	Nonsense_Mutation	G	T	p.E412*
LGG	TCGA-DU-6392-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740589	62740589	Nonsense_Mutation	G	A	p.Q63*
LGG	TCGA-DU-6392-01	SPIDR	ENST00000524033.1	chr8	48203641:48203726:48320422:48320523:48352884:48352959,48308935:48309186:48320422:48320523:48352884:48352959,48206455:48206619:48320422:48320523:48352884:48352959,	48320423	48320523	48320493	48320493	Nonsense_Mutation	C	T	p.Q283*
LGG	TCGA-DU-6392-01	SCMH1	ENST00000326197.7,ENST00000372595.1,ENST00000402904.2,ENST00000361705.3,ENST00000397174.2,ENST00000397171.2,ENST00000361191.5,ENST00000372597.1,ENST00000372596.1,ENST00000337495.5	chr1	41540890:41541123:41578954:41579198:41582593:41582682,	41578955	41579198	41579057	41579057	Nonsense_Mutation	G	A	p.R205*
LGG	TCGA-DU-6392-01	TPST1	ENST00000480281.1,ENST00000304842.5	chr7	65751497:65751696:65817491:65817542:65821811:65821858,	65817492	65817542	65817504	65817504	Nonsense_Mutation	G	T	p.E353*
LGG	TCGA-DU-6392-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190742	17190742	Nonsense_Mutation	C	A	p.E183*
LGG	TCGA-DU-6392-01	CDC27	ENST00000066544.3,ENST00000527547.1,ENST00000533415.1,ENST00000446365.2	chr17	45229179:45229284:45232037:45232152:45234278:45234349,	45232038	45232152	45232100	45232100	Nonsense_Mutation	G	A	p.Q299*
LGG	TCGA-DU-6392-01	CDC27	ENST00000576484.1	chr17	45229179:45229284:45232037:45232230:45234278:45234349,	45232038	45232230	45232100	45232100	Nonsense_Mutation	G	A	p.Q299*
LGG	TCGA-DU-6392-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819521	53819521	Nonsense_Mutation	G	T	p.G224*
LGG	TCGA-DU-6392-01	TNIP1	ENST00000389378.2	chr5	150443173:150443308:150444520:150444688:150460440:150460576,	150444521	150444688	150444602	150444602	Nonsense_Mutation	C	A	p.G19*
LGG	TCGA-DU-6392-01	TNIP1	ENST00000315050.7,ENST00000523338.1	chr5	150443173:150443308:150444520:150444692:150460440:150460576,150443173:150443308:150444520:150444692:150466645:150466719,	150444521	150444692	150444602	150444602	Nonsense_Mutation	C	A	p.G19*
LGG	TCGA-DU-6392-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346645	29346645	Nonsense_Mutation	C	A	p.Y186*
LGG	TCGA-DU-6392-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300809	18300809	Nonsense_Mutation	G	A	p.Q1540*
LGG	TCGA-DU-6392-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000554704.1,ENST00000307138.6,ENST00000554652.1	chr14	36211573:36211771:36217790:36218030:36219687:36219735,	36217791	36218030	36217958	36217958	Nonsense_Mutation	C	A	p.E362*
LGG	TCGA-DU-6392-01	LOXL2	ENST00000389131.3	chr8	23174461:23174627:23177397:23177565:23179642:23179794,	23177398	23177565	23177529	23177529	Nonsense_Mutation	G	A	p.R447*
LGG	TCGA-DU-6392-01	OGN	ENST00000447356.1,ENST00000262551.4,ENST00000375561.5	chr9	95152135:95152338:95155367:95155526:95163373:95163467,	95155368	95155526	95155416	95155416	Nonsense_Mutation	G	A	p.R127*
LGG	TCGA-DU-6392-01	TBCA	ENST00000306388.6	chr5	76989090:76989177:77004066:77004172:77072028:77072085,	77004067	77004172	77004141	77004141	Nonsense_Mutation	C	A	p.E29*
LGG	TCGA-DU-6392-01	LMO7	ENST00000377499.5	chr13	76209945:76210026:76287317:76287388:76301164:76301234,76210791:76210862:76287317:76287388:76301164:76301234,	76287318	76287388	76287327	76287327	Nonsense_Mutation	G	T	p.E79*
LGG	TCGA-DU-6392-01	SUMF2	ENST00000434526.2,ENST00000529457.1,ENST00000498777.1,ENST00000447501.1,ENST00000413756.1,ENST00000437307.2,ENST00000342190.6,ENST00000423763.1	chr7	56136174:56136331:56140689:56140804:56145794:56145879,56136243:56136331:56140689:56140804:56144526:56144582,56136174:56136331:56140689:56140804:56141866:56141911,	56140690	56140804	56140721	56140721	Nonsense_Mutation	G	T	p.E105*
LGG	TCGA-DU-6392-01	DAPK1	ENST00000469640.2,ENST00000408954.3,ENST00000358077.5,ENST00000472284.1,ENST00000491893.1,ENST00000489291.1	chr9	90266441:90266639:90272943:90273042:90283511:90283589,	90272944	90273042	90272950	90272950	Nonsense_Mutation	C	T	p.R611*
LGG	TCGA-DU-6392-01	DENND1A	ENST00000542603.1,ENST00000473039.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000373618.1,ENST00000394215.2,ENST00000474676.1	chr9	126345447:126345549:126371714:126371760:126392654:126392755,	126371715	126371760	126371738	126371738	Nonsense_Mutation	C	A	p.G248*
LGG	TCGA-DU-6392-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000397519.2	chr9	15478474:15478550:15479588:15479685:15486003:15486066,	15479589	15479685	15479598	15479598	Nonsense_Mutation	G	A	p.R182*
LGG	TCGA-DU-6392-01	RSF1	ENST00000308488.6,ENST00000480887.1,ENST00000360355.2	chr11	77377274:77378536:77383086:77383275:77386080:77386301,	77383087	77383275	77383090	77383090	Nonsense_Mutation	C	A	p.E1250*
LGG	TCGA-DU-6392-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715761	68715761	Nonsense_Mutation	C	A	p.Y183*
LGG	TCGA-DU-6392-01	CYP4Z1	ENST00000334194.3	chr1	47546294:47546339:47548005:47548133:47550291:47550416,	47548006	47548133	47548008	47548008	Nonsense_Mutation	C	T	p.R123*
LGG	TCGA-DU-6392-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197074288	197074288	Nonsense_Mutation	G	A	p.Q1365*
LGG	TCGA-DU-6392-01	CBR4	ENST00000306193.3	chr4	169815720:169815916:169923221:169923356:169927905:169927939,169908740:169911479:169923221:169923356:169927905:169927939,	169923222	169923356	169923300	169923300	Nonsense_Mutation	C	A	p.G153*
LGG	TCGA-DU-6392-01	SUPT6H	ENST00000347486.4,ENST00000314616.6	chr17	27017938:27018081:27020713:27020854:27022369:27022565,	27020714	27020854	27020846	27020846	Nonsense_Mutation	C	T	p.R1256*
LGG	TCGA-DU-6392-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5,ENST00000481505.1,ENST00000342215.6	chr3	171410121:171410232:171417534:171417616:171426544:171426628,	171417535	171417616	171417543	171417543	Nonsense_Mutation	G	A	p.R407*
LGG	TCGA-DU-6392-01	NPM1	ENST00000296930.5,ENST00000393820.2,ENST00000517671.1	chr5	170827156:170827214:170827842:170827929:170832305:170832392,	170827843	170827929	170827849	170827849	Nonsense_Mutation	C	T	p.R197*
LGG	TCGA-DU-6392-01	NEMF	ENST00000556925.1	chr14	50295333:50295505:50295771:50295980:50296066:50296144,	50295772	50295980	50295879	50295879	Nonsense_Mutation	C	T	p.W375*
LGG	TCGA-DU-6392-01	MORN1	ENST00000449373.1,ENST00000378525.2,ENST00000378529.3,ENST00000378531.3,ENST00000606372.1	chr1	2317245:2317336:2318857:2318968:2319677:2319755,	2318858	2318968	2318951	2318951	Nonsense_Mutation	G	A	p.Q89*
LGG	TCGA-DU-6392-01	ILDR1	ENST00000344209.5,ENST00000460554.1,ENST00000273691.3,ENST00000462014.1	chr3	121720154:121720301:121720591:121720711:121724090:121724240,	121720592	121720711	121720628	121720628	Nonsense_Mutation	C	A	p.G155*
LGG	TCGA-DU-6392-01	VPS36	ENST00000378060.4	chr13	53007796:53007883:53008927:53009017:53010424:53010539,	53008928	53009017	53008987	53008987	Nonsense_Mutation	G	A	p.Q128*
LGG	TCGA-DU-6392-01	SCUBE2	ENST00000519788.2,ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000520467.1	chr11	9075189:9075306:9077339:9077456:9080849:9080972,	9077340	9077456	9077443	9077443	Nonsense_Mutation	G	T	p.C368*
LGG	TCGA-DU-6392-01	MMS22L	ENST00000275053.4,ENST00000509383.1	chr6	97679301:97679528:97681736:97681856:97694503:97694566,	97681737	97681856	97681832	97681832	Nonsense_Mutation	G	A	p.R403*
LGG	TCGA-DU-6392-01	SHC2	ENST00000590170.1	chr19	418922:419056:422145:422379:430683:430747,	422146	422379	422274	422274	Nonsense_Mutation	C	A	p.E498*
LGG	TCGA-DU-6392-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949302	116949302	Nonsense_Mutation	G	T	p.G478*
LGG	TCGA-DU-6392-01	ARV1	ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231114891:231115025:231125855:231126009:231131505:231131730,231124065:231124185:231125855:231126009:231131505:231131730,	231125856	231126009	231125862	231125862	Nonsense_Mutation	G	T	p.G101*
LGG	TCGA-DU-6392-01	LDB3	ENST00000361373.4,ENST00000263066.6,ENST00000352360.5,ENST00000458213.2,ENST00000429277.2	chr10	88478486:88478604:88485893:88486009:88492643:88495822,	88485894	88486009	88485985	88485985	Nonsense_Mutation	G	A	p.W695*
LGG	TCGA-DU-6392-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95182624:95182775:95183081:95183213:95186024:95186224,	95183082	95183213	95183096	95183096	Nonsense_Mutation	C	A	p.E301*
LGG	TCGA-DU-6392-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730081	37730081	Nonsense_Mutation	C	A	p.G747*
LGG	TCGA-DU-6392-01	CNOT7	ENST00000361272.4	chr8	17088076:17088357:17089935:17090046:17092224:17092369,	17089936	17090046	17089983	17089983	Nonsense_Mutation	C	A	p.G228*
LGG	TCGA-DU-6392-01	CCDC146	ENST00000285871.4,ENST00000431197.1,ENST00000415750.1	chr7	76866263:76866346:76871007:76871217:76883822:76883880,	76871008	76871217	76871012	76871012	Nonsense_Mutation	C	T	p.Q82*
LGG	TCGA-DU-6392-01	PEX13	ENST00000295030.5	chr2	61244864:61244986:61258553:61259248:61272860:61272986,	61258554	61259248	61258831	61258831	Nonsense_Mutation	G	T	p.E124*
LGG	TCGA-DU-6392-01	ST6GAL1	ENST00000169298.3,ENST00000448044.1	chr3	186756529:186756661:186760441:186761098:186769036:186769134,	186760442	186761098	186760527	186760527	Nonsense_Mutation	C	A	p.C12*
LGG	TCGA-DU-6392-01	SLCO4A1	ENST00000370507.1,ENST00000217159.1,ENST00000497209.1	chr20	61290028:61290119:61291763:61291885:61292415:61292527,	61291764	61291885	61291876	61291876	Nonsense_Mutation	C	T	p.Q334*
LGG	TCGA-DU-6392-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056262	27056262	Nonsense_Mutation	C	T	p.Q420*
LGG	TCGA-DU-6392-01	TMEM165	ENST00000608091.1	chr4	56283969:56284152:56290704:56290810:56318405:56318625,	56290705	56290810	56290771	56290771	Nonsense_Mutation	G	T	p.G287*
LGG	TCGA-DU-6392-01	TTC12	ENST00000393020.1,ENST00000464224.1,ENST00000529221.1,ENST00000483239.2,ENST00000314756.3,ENST00000494714.1	chr11	113210007:113210196:113211385:113211455:113212558:113212647,	113211386	113211455	113211391	113211391	Nonsense_Mutation	G	T	p.E278*
LGG	TCGA-DU-6392-01	DECR1	ENST00000517314.1,ENST00000520227.1,ENST00000524326.1,ENST00000521603.1,ENST00000220764.2,ENST00000523447.1,ENST00000517761.1,ENST00000517597.1,ENST00000522161.1,ENST00000519410.1	chr8	91031313:91031400:91033136:91033284:91049068:91049107,	91033137	91033284	91033202	91033202	Nonsense_Mutation	G	A	p.W152*
LGG	TCGA-DU-6392-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000426982.2,ENST00000440579.1	chr1	35919962:35920086:35921613:35921842:35925905:35926038,	35921614	35921842	35921616	35921616	Nonsense_Mutation	G	A	p.Q552*
LGG	TCGA-DU-6392-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923090	158923090	Nonsense_Mutation	C	T	p.Q799*
LGG	TCGA-DU-6392-01	STPG2	ENST00000295268.3	chr4	99049578:99049743:99055497:99055610:99064192:99064391,	99055498	99055610	99055575	99055575	Nonsense_Mutation	C	A	p.E49*
LGG	TCGA-DU-6392-01	CHD1L	ENST00000369258.4,ENST00000431239.1,ENST00000467213.1	chr1	146731490:146731572:146736080:146736243:146737590:146737746,	146736081	146736243	146736231	146736231	Nonsense_Mutation	G	T	p.E243*
LGG	TCGA-DU-6392-01	EFCAB13	ENST00000331493.2	chr17	45422381:45422464:45425173:45425317:45438743:45438830,	45425174	45425317	45425209	45425209	Nonsense_Mutation	C	T	p.R185*
LGG	TCGA-DU-6392-01	RARS2	ENST00000369536.5	chr6	88240501:88240660:88251635:88251712:88255333:88255417,	88251636	88251712	88251665	88251665	Nonsense_Mutation	G	A	p.Q195*
LGG	TCGA-DU-6392-01	ILF3	ENST00000592763.1,ENST00000250241.8,ENST00000420083.1,ENST00000590261.1,ENST00000318511.3,ENST00000593061.1,ENST00000449870.1,ENST00000407004.3,ENST00000589998.1,ENST00000587928.1,ENST00000588657.1	chr19	10794193:10794218:10794311:10794465:10794592:10794646,	10794312	10794465	10794426	10794426	Nonsense_Mutation	G	T	p.G660*
LGG	TCGA-DU-6392-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61413994	61413994	Nonsense_Mutation	C	A	p.E264*
LGG	TCGA-DU-6392-01	SLC41A3	ENST00000315891.6,ENST00000360370.4,ENST00000383598.2,ENST00000508835.1,ENST00000514677.1,ENST00000346785.5	chr3	125735626:125735718:125741628:125741775:125745177:125745322,	125741629	125741775	125741743	125741743	Nonsense_Mutation	G	A	p.R185*
LGG	TCGA-DU-6392-01	PREX2	ENST00000288368.4	chr8	69058443:69058587:69069556:69069671:69103956:69104023,	69069557	69069671	69069574	69069574	Nonsense_Mutation	G	T	p.G1417*
LGG	TCGA-DU-6392-01	PAPOLA	ENST00000555224.1,ENST00000557406.1	chr14	96993778:96993876:96994289:96994343:96997811:96997923,96991646:96991728:96994289:96994343:96997811:96997923,	96994290	96994343	96994341	96994341	Nonsense_Mutation	G	T	p.E165*
LGG	TCGA-DU-6392-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717916	73717916	Nonsense_Mutation	G	T	p.E2943*
LGG	TCGA-DU-6392-01	TMCO4	ENST00000496528.1,ENST00000489135.1,ENST00000294543.6,ENST00000375122.2,ENST00000375127.1	chr1	20097034:20097062:20097800:20097975:20107072:20107257,	20097801	20097975	20097881	20097881	Nonsense_Mutation	C	A	p.G92*
LGG	TCGA-DU-6392-01	PTPRG	ENST00000474889.1,ENST00000295874.10	chr3	61989022:61989171:62063836:62063932:62118275:62118342,	62063837	62063932	62063840	62063840	Nonsense_Mutation	C	T	p.Q175*
LGG	TCGA-DU-6392-01	MYO9A	ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000567560.1	chr15	72324834:72324929:72338064:72338975:72410020:72410109,	72338065	72338975	72338703	72338703	Nonsense_Mutation	C	A	p.E68*
LGG	TCGA-DU-6392-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123629520:123629553:123658355:123658484:123661905:123662053,	123658356	123658484	123658451	123658451	Nonsense_Mutation	C	A	p.E283*
LGG	TCGA-DU-6392-01	POLK	ENST00000509126.1	chr5	74886177:74886265:74892046:74893003:74893571:74893614,	74892047	74893003	74892160	74892160	Nonsense_Mutation	G	T	p.E548*
LGG	TCGA-DU-6392-01	QDPR	ENST00000514300.1,ENST00000507439.1,ENST00000513615.1	chr4	17488801:17488859:17492284:17492368:17503341:17503482,	17492285	17492368	17492298	17492298	Nonsense_Mutation	C	A	p.E206*
LGG	TCGA-DU-6392-01	ARHGAP26	ENST00000274498.4,ENST00000378004.3	chr5	142273802:142273913:142281499:142281604:142283104:142283234,	142281500	142281604	142281518	142281518	Nonsense_Mutation	G	T	p.G206*
LGG	TCGA-DU-6392-01	TULP4	ENST00000367097.3,ENST00000367094.2	chr6	158834096:158834225:158850767:158850929:158870027:158870208,	158850768	158850929	158850911	158850911	Nonsense_Mutation	G	A	p.W175*
LGG	TCGA-DU-6392-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000466241.1,ENST00000443124.1,ENST00000263713.5	chr2	120776723:120776840:120799581:120799686:120830753:120830796,	120799582	120799686	120799600	120799600	Nonsense_Mutation	G	T	p.E67*
LGG	TCGA-DU-6392-01	CCSAP	ENST00000284617.2	chr1	229459285:229461158:229462484:229462753:229477845:229478260,	229462485	229462753	229462700	229462700	Nonsense_Mutation	C	A	p.E141*
LGG	TCGA-DU-6392-01	DCUN1D1	ENST00000492563.1	chr3	182681787:182681837:182683466:182683541:182698274:182698308,	182683467	182683541	182683487	182683487	Nonsense_Mutation	G	A	p.Q20*
LGG	TCGA-DU-6392-01	CLEC1A	ENST00000315330.4,ENST00000457018.2	chr12	10225891:10226010:10228102:10228254:10233835:10234012,	10228103	10228254	10228126	10228126	Nonsense_Mutation	T	A	p.K174*
LGG	TCGA-DU-6392-01	ADIPOR1	ENST00000367254.3,ENST00000436244.1,ENST00000426229.1,ENST00000340990.5,ENST00000417068.1	chr1	202915566:202915738:202917431:202917548:202920057:202920292,	202917432	202917548	202917539	202917539	Nonsense_Mutation	C	A	p.E51*
LGG	TCGA-DU-6392-01	ADPRHL1	ENST00000356501.4,ENST00000375418.3	chr13	114077140:114077294:114078531:114078664:114079366:114079494,	114078532	114078664	114078566	114078566	Nonsense_Mutation	C	T	p.W209*
LGG	TCGA-DU-6392-01	EIF4A1	ENST00000396527.3,ENST00000583389.1,ENST00000584860.1,ENST00000578324.1,ENST00000293831.8,ENST00000582746.1,ENST00000581544.1,ENST00000578495.1,ENST00000577269.1,ENST00000578754.1	chr17	7480373:7480483:7480661:7480805:7480886:7480937,	7480662	7480805	7480800	7480800	Nonsense_Mutation	C	T	p.R255*
LGG	TCGA-DU-6392-01	EIF4A1	ENST00000584784.1	chr17	7480373:7480483:7480751:7480805:7480886:7480937,	7480752	7480805	7480800	7480800	Nonsense_Mutation	C	T	p.R255*
LGG	TCGA-DU-6392-01	CAPN9	ENST00000354537.1,ENST00000271971.2	chr1	230891082:230891152:230895257:230895376:230898398:230898532,	230895258	230895376	230895265	230895265	Nonsense_Mutation	C	A	p.C97*
LGG	TCGA-DU-6392-01	DDAH2	ENST00000437288.1,ENST00000375787.2,ENST00000375789.2,ENST00000480913.1,ENST00000436437.1,ENST00000416410.1,ENST00000375792.3	chr6	31695949:31696069:31696227:31696301:31696422:31696522,	31696228	31696301	31696257	31696257	Nonsense_Mutation	C	A	p.G148*
LGG	TCGA-DU-6392-01	RAPGEF2	ENST00000264431.4	chr4	160274638:160275198:160277004:160277310:160279265:160281321,	160277005	160277310	160277280	160277280	Nonsense_Mutation	C	T	p.Q1482*
LGG	TCGA-DU-6392-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637555	52637555	Nonsense_Mutation	G	A	p.R889*
LGG	TCGA-DU-6392-01	CPB2	ENST00000181383.4	chr13	46632313:46632516:46638782:46638876:46648007:46648112,46632313:46632516:46638782:46638876:46641441:46641552,	46638783	46638876	46638873	46638873	Nonsense_Mutation	G	A	p.R236*
LGG	TCGA-DU-6392-01	ARL14EP	ENST00000282032.3	chr11	30352432:30352921:30354412:30354540:30358113:30358373,	30354413	30354540	30354443	30354443	Nonsense_Mutation	C	T	p.Q153*
LGG	TCGA-DU-6392-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47651555:47651817:47663696:47663831:47676679:47676831,	47663697	47663831	47663813	47663813	Nonsense_Mutation	C	A	p.E889*
LGG	TCGA-DU-6392-01	AGPAT5	ENST00000530716.1,ENST00000523234.1,ENST00000285518.6	chr8	6599181:6599272:6605190:6605349:6612571:6612695,	6605191	6605349	6605223	6605223	Nonsense_Mutation	C	T	p.R207*
LGG	TCGA-DU-6392-01	SPC25	ENST00000282074.2	chr2	169745735:169745801:169745896:169746043:169746827:169746955,	169745897	169746043	169745979	169745979	Nonsense_Mutation	C	T	p.W17*
LGG	TCGA-DU-6392-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000435423.1,ENST00000359028.2,ENST00000356239.3	chr7	91714898:91715000:91715541:91715730:91718698:91718843,	91715542	91715730	91715584	91715584	Nonsense_Mutation	C	T	p.R3027*
LGG	TCGA-DU-6392-01	ANGEL1	ENST00000251089.2	chr14	77270128:77270255:77272758:77273192:77273775:77273845,	77272759	77273192	77272762	77272762	Nonsense_Mutation	C	T	p.W459*
LGG	TCGA-DU-6392-01	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41711045:41711342:41719596:41719872:41725391:41725581,	41719597	41719872	41719792	41719792	Nonsense_Mutation	C	A	p.G339*
LGG	TCGA-DU-6392-01	TOM1L1	ENST00000572158.1,ENST00000572405.1,ENST00000570977.1,ENST00000575882.1,ENST00000575333.1,ENST00000570371.1,ENST00000536554.1,ENST00000575909.1,ENST00000572576.1,ENST00000576932.1,ENST00000348161.4,ENST00000570965.1,ENST00000445275.2	chr17	52991179:52991234:52991999:52992104:52993106:52993208,	52992000	52992104	52992099	52992099	Nonsense_Mutation	G	T	p.E200*
LGG	TCGA-DU-6392-01	DNAJC19	ENST00000478723.1,ENST00000479269.1,ENST00000486355.1,ENST00000382564.2	chr3	180703713:180703784:180705810:180705884:180705965:180706017,180704785:180704810:180705810:180705884:180707387:180707491,180704785:180704810:180705810:180705884:180705965:180706017,	180705811	180705884	180705837	180705837	Nonsense_Mutation	G	A	p.Q35*
LGG	TCGA-DU-6392-01	ABCA6	ENST00000284425.2	chr17	67129781:67130008:67130779:67130883:67132232:67132391,	67130780	67130883	67130869	67130869	Nonsense_Mutation	C	A	p.G159*
LGG	TCGA-DU-6392-01	C20orf96	ENST00000360321.2	chr20	264603:264722:270199:270317:270899:270948,	270200	270317	270254	270254	Nonsense_Mutation	G	A	p.Q45*
LGG	TCGA-DU-6392-01	CREBRF	ENST00000296953.2	chr5	172517317:172518404:172535626:172535821:172537524:172537714,	172535627	172535821	172535773	172535773	Nonsense_Mutation	C	T	p.R457*
LGG	TCGA-DU-6392-01	NCAPD2	ENST00000545962.1,ENST00000539885.1,ENST00000315579.5,ENST00000539084.1	chr12	6638682:6638759:6638940:6639124:6639856:6639896,	6638941	6639124	6638999	6638999	Nonsense_Mutation	C	T	p.R1238*
LGG	TCGA-DU-6392-01	YY1AP1	ENST00000295566.4,ENST00000405763.3,ENST00000476027.1,ENST00000438245.2,ENST00000496324.1,ENST00000368339.5,ENST00000368330.2,ENST00000361140.4,ENST00000454523.1,ENST00000347088.5,ENST00000354691.5,ENST00000404643.1,ENST00000355499.4,ENST00000368340.5,ENST00000493625.1	chr1	155646338:155646537:155649199:155649303:155657861:155657992,155646338:155646537:155649199:155649303:155650206:155650218,	155649200	155649303	155649258	155649258	Nonsense_Mutation	C	A	p.E161*
LGG	TCGA-DU-6392-01	GBF1	ENST00000369983.3	chr10	104119940:104120152:104120778:104120877:104121474:104121669,	104120779	104120877	104120794	104120794	Nonsense_Mutation	C	T	p.R469*
LGG	TCGA-DU-6392-01	C11orf16	ENST00000525780.1,ENST00000326053.5	chr11	8947009:8947654:8948486:8948721:8950923:8950975,	8948487	8948721	8948649	8948649	Nonsense_Mutation	G	A	p.Q133*
LGG	TCGA-DU-6392-01	MYLK3	ENST00000394809.4	chr16	46766119:46766580:46771622:46772055:46773968:46774059,	46771623	46772055	46771765	46771765	Nonsense_Mutation	C	A	p.G287*
LGG	TCGA-DU-6392-01	MAPK3	ENST00000490298.1,ENST00000395199.3,ENST00000478356.1,ENST00000263025.4,ENST00000403394.1,ENST00000395200.1,ENST00000484663.1	chr16	30128271:30128324:30128474:30128606:30128990:30129021,	30128475	30128606	30128550	30128550	Nonsense_Mutation	G	A	p.R164*
LGG	TCGA-DU-6392-01	MAPK3	ENST00000466521.1	chr16	30128271:30128324:30128457:30128606:30128990:30129021,	30128458	30128606	30128550	30128550	Nonsense_Mutation	G	A	p.R164*
LGG	TCGA-DU-6392-01	PRKCQ	ENST00000263125.5,ENST00000397176.2	chr10	6540357:6540520:6549397:6549458:6552956:6553154,	6549398	6549458	6549437	6549437	Nonsense_Mutation	G	A	p.R114*
LGG	TCGA-HT-7860-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16026364	16026364	Nonsense_Mutation	C	T	p.W78*
LGG	TCGA-HT-7470-01	SNX19	ENST00000533318.1,ENST00000530356.1,ENST00000265909.4,ENST00000528555.1,ENST00000539184.1,ENST00000545537.1,ENST00000534726.1	chr11	130749518:130749606:130750516:130750701:130773149:130773279,	130750517	130750701	130750571	130750571	Nonsense_Mutation	G	A	p.Q902*
LIHC	TCGA-DD-AADA-01	PLA2G4A	ENST00000466600.1	chr1	186876096:186876134:186880379:186880521:186901894:186902031,186876096:186876134:186880379:186880521:186908139:186908362,	186880380	186880521	186880396	186880396	Nonsense_Mutation	C	T	p.R145X
LIHC	TCGA-DD-AADA-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437795	52437795	Nonsense_Mutation	G	A	p.Q456X
LIHC	TCGA-DD-AADA-01	BAP1	ENST00000296288.5,ENST00000471532.1,ENST00000460680.1	chr3	52440844:52440923:52441189:52441332:52441414:52441476,	52441190	52441332	52441304	52441304	Nonsense_Mutation	G	A	p.Q156X
LIHC	TCGA-DD-A114-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677972	73677972	Nonsense_Mutation	C	T	p.Q1439X
LIHC	TCGA-DD-A114-01	TSC2	ENST00000461648.2,ENST00000353929.4,ENST00000350773.4,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2098033:2098066:2098587:2098754:2100400:2100487,	2098588	2098754	2098719	2098719	Nonsense_Mutation	C	T	p.Q35X
LIHC	TCGA-CC-A5UE-01	ITGA3	ENST00000544892.1,ENST00000506401.2,ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48148674:48148882:48149349:48149546:48151279:48151368,	48149350	48149546	48149396	48149396	Nonsense_Mutation	G	T	p.E336X
LIHC	TCGA-CC-A5UE-01	USP9Y	ENST00000426564.2,ENST00000338981.3	chrY	14949836:14949978:14951789:14952540:14952935:14953059,	14951790	14952540	14951877	14951877	Nonsense_Mutation	G	T	p.E1809X
LIHC	TCGA-ED-A7PX-01	PRIMA1	ENST00000316227.3,ENST00000393140.1,ENST00000393143.1,ENST00000477603.1	chr14	94203586:94203716:94245521:94245657:94253971:94254095,	94245522	94245657	94245606	94245606	Nonsense_Mutation	G	A	p.R49X
LIHC	TCGA-DD-AACJ-01	LONRF1	ENST00000524526.2,ENST00000533751.1,ENST00000398246.3,ENST00000526610.1,ENST00000526680.1	chr8	12586682:12586841:12589244:12589366:12592794:12592909,	12589245	12589366	12589255	12589255	Nonsense_Mutation	C	A	p.E560X
LIHC	TCGA-DD-AACX-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229631638:229631794:229633882:229634053:229635430:229635565,	229633883	229634053	229633912	229633912	Nonsense_Mutation	C	A	p.G264X
LIHC	TCGA-DD-AADI-01	TRIM2	ENST00000441616.1	chr4	154074269:154074422:154191489:154191671:154197044:154197282,154073644:154073764:154191489:154191671:154197044:154197282,	154191490	154191671	154191666	154191666	Nonsense_Mutation	C	A	p.C70X
LIHC	TCGA-DD-AADI-01	TRIM2	ENST00000494872.1,ENST00000479711.1,ENST00000338700.5	chr4	154178561:154178759:154191486:154191671:154197044:154197282,154125617:154125712:154191486:154191671:154197044:154197282,	154191487	154191671	154191666	154191666	Nonsense_Mutation	C	A	p.C70X
LIHC	TCGA-DD-AADI-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532X
LIHC	TCGA-DD-AADI-01	PML	ENST00000268058.3,ENST00000435786.2,ENST00000569965.1,ENST00000566068.1,ENST00000268059.6,ENST00000395135.3,ENST00000569477.1,ENST00000436891.3	chr15	74317220:74317268:74324912:74325056:74325496:74325546,	74324913	74325056	74324992	74324992	Nonsense_Mutation	C	G	p.S445X
LIHC	TCGA-EP-A3RK-01	PALMD	ENST00000496843.1,ENST00000263174.4	chr1	100152631:100152745:100154330:100155428:100159574:100160097,	100154331	100155428	100154970	100154970	Nonsense_Mutation	C	G	p.S385X
LIHC	TCGA-DD-AAD3-01	ADH5	ENST00000512621.1,ENST00000508511.1,ENST00000512991.1,ENST00000296412.8	chr4	99998003:99998074:100002515:100002603:100003125:100003267,	100002516	100002603	100002517	100002517	Nonsense_Mutation	T	A	p.R115X
LIHC	TCGA-DD-AAD3-01	ADH5	ENST00000502590.1	chr4	99998003:99998074:100002515:100002571:100003125:100003267,	100002516	100002571	100002517	100002517	Nonsense_Mutation	T	A	p.R115X
LIHC	TCGA-DD-AAD2-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204804	56204804	Nonsense_Mutation	G	T	p.S872X
LIHC	TCGA-4R-AA8I-01	ETFDH	ENST00000307738.5,ENST00000511912.1	chr4	159618710:159618851:159620138:159620282:159624574:159624743,	159620139	159620282	159620153	159620153	Nonsense_Mutation	T	A	p.Y329X
LIHC	TCGA-4R-AA8I-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32088757	32088757	Nonsense_Mutation	G	T	p.E1735X
LIHC	TCGA-4R-AA8I-01	TIMD4	ENST00000274532.2	chr5	156349109:156349227:156353273:156353323:156375426:156375510,	156353274	156353323	156353300	156353300	Nonsense_Mutation	G	A	p.Q290X
LIHC	TCGA-4R-AA8I-01	DNAJB13	ENST00000339764.1	chr11	73670538:73670700:73675922:73676080:73677182:73677296,	73675923	73676080	73675956	73675956	Nonsense_Mutation	T	A	p.L123X
LIHC	TCGA-4R-AA8I-01	TFCP2	ENST00000549867.1,ENST00000307660.4,ENST00000548115.1	chr12	51511453:51511530:51512403:51512555:51566083:51566217,	51512404	51512555	51512404	51512404	Nonsense_Mutation	C	A	p.G92X
LIHC	TCGA-4R-AA8I-01	PSMD11	ENST00000261712.3,ENST00000457654.2	chr17	30804538:30804601:30806268:30806394:30806868:30806904,	30806269	30806394	30806365	30806365	Nonsense_Mutation	C	T	p.R337X
LIHC	TCGA-4R-AA8I-01	TPM4	ENST00000586499.1,ENST00000586833.1,ENST00000538887.1,ENST00000344824.6	chr19	16187308:16187507:16192722:16192856:16197232:16197286,16186909:16186982:16192722:16192856:16197232:16197286,	16192723	16192856	16192750	16192750	Nonsense_Mutation	C	T	p.R90X
LIHC	TCGA-4R-AA8I-01	VSIG10L	ENST00000335624.4,ENST00000600663.1	chr19	51837444:51837558:51840491:51840788:51841183:51841462,	51840492	51840788	51840531	51840531	Nonsense_Mutation	G	A	p.Q756X
LIHC	TCGA-4R-AA8I-01	GAS2L1	ENST00000471961.1,ENST00000491016.1,ENST00000406549.3,ENST00000407647.2,ENST00000407854.1,ENST00000341313.6,ENST00000403764.1	chr22	29706428:29706536:29706627:29706724:29706816:29706988,	29706628	29706724	29706652	29706652	Nonsense_Mutation	C	T	p.R256X
LIHC	TCGA-DD-AAEI-01	FGF7	ENST00000560765.2	chr15	49715456:49715637:49716228:49716780:49775347:49775451,	49716229	49716780	49716642	49716642	Nonsense_Mutation	G	T	p.E50X
LIHC	TCGA-DD-AAEI-01	FGF7	ENST00000560979.1	chr15	49715456:49715637:49716637:49716780:49775347:49775451,	49716638	49716780	49716642	49716642	Nonsense_Mutation	G	T	p.E50X
LIHC	TCGA-2Y-A9H9-01	MSH6	ENST00000445503.1	chr2	48010308:48010632:48018065:48018262:48023032:48023175,48010308:48010632:48018065:48018262:48025749:48025766,	48018066	48018262	48018238	48018238	Nonsense_Mutation	A	T	p.K145X
LIHC	TCGA-2Y-A9H9-01	MAP4	ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47908735:47908828:47910703:47910817:47912302:47912595,	47910704	47910817	47910778	47910778	Nonsense_Mutation	G	A	p.R967X
LIHC	TCGA-2Y-A9H9-01	TLK2	ENST00000583310.1,ENST00000326270.9,ENST00000343388.7,ENST00000542523.1,ENST00000346027.5,ENST00000582809.1	chr17	60683490:60683602:60685401:60685509:60689752:60689934,	60685402	60685509	60685417	60685417	Nonsense_Mutation	C	T	p.Q663X
LIHC	TCGA-2Y-A9H9-01	NOL4	ENST00000538587.1,ENST00000586314.1,ENST00000261592.5,ENST00000269185.4,ENST00000535475.1,ENST00000589544.1,ENST00000590712.1	chr18	31538202:31538382:31599281:31599565:31673428:31673561,	31599282	31599565	31599308	31599308	Nonsense_Mutation	G	A	p.R344X
LIHC	TCGA-DD-A4NE-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257754	6257754	Nonsense_Mutation	G	T	p.C25X
LIHC	TCGA-DD-A4NE-01	GORAB	ENST00000367762.1	chr1	170501291:170501425:170508350:170508708:170511631:170511733,	170508351	170508708	170508682	170508682	Nonsense_Mutation	C	A	p.C156X
LIHC	TCGA-UB-AA0V-01	DTX2	ENST00000468546.1,ENST00000446820.2,ENST00000413936.2,ENST00000446600.1,ENST00000324432.5,ENST00000479915.1,ENST00000307569.8,ENST00000430490.2	chr7	76131614:76131773:76132742:76132904:76133672:76133762,	76132743	76132904	76132782	76132782	Nonsense_Mutation	G	T	p.G477X
LIHC	TCGA-UB-AA0V-01	FATE1	ENST00000370350.3	chrX	150885743:150885871:150889866:150889973:150890374:150890453,	150889867	150889973	150889930	150889930	Nonsense_Mutation	G	T	p.E100X
LIHC	TCGA-G3-A7M6-01	FSTL5	ENST00000536695.1,ENST00000306100.5,ENST00000379164.4	chr4	162421167:162421286:162431549:162431576:162459317:162459452,	162431550	162431576	162431553	162431553	Nonsense_Mutation	C	A	p.E446X
LIHC	TCGA-CC-A9FU-01	VTI1A	ENST00000489357.1,ENST00000489142.1,ENST00000432306.1,ENST00000393077.2,ENST00000494728.1,ENST00000496445.1,ENST00000480057.1	chr10	114207116:114207225:114220282:114220341:114224305:114224416,	114220283	114220341	114220315	114220315	Nonsense_Mutation	A	T	p.K43X
LIHC	TCGA-EP-A2KA-01	PALMD	ENST00000496843.1,ENST00000263174.4	chr1	100152631:100152745:100154330:100155428:100159574:100160097,	100154331	100155428	100154877	100154877	Nonsense_Mutation	C	A	p.S354X
LIHC	TCGA-EP-A2KA-01	NCK2	ENST00000233154.4,ENST00000393349.2	chr2	106471506:106471745:106497783:106498505:106509437:106509632,	106497784	106498505	106498261	106498261	Nonsense_Mutation	G	A	p.W235X
LIHC	TCGA-EP-A2KA-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4726752:4726890:4730178:4730304:4732827:4733028,	4730179	4730304	4730230	4730230	Nonsense_Mutation	C	T	p.Q1243X
LIHC	TCGA-EP-A2KA-01	SLC26A6	ENST00000431213.1	chr3	48669370:48669477:48669677:48669770:48670406:48670517,	48669678	48669770	48669737	48669737	Nonsense_Mutation	T	A	p.R176X
LIHC	TCGA-EP-A2KA-01	SLC26A6	ENST00000395550.2,ENST00000383733.3,ENST00000482282.1,ENST00000358747.6,ENST00000420764.2,ENST00000480524.1,ENST00000307364.6	chr3	48669370:48669477:48669677:48669829:48670406:48670517,	48669678	48669829	48669737	48669737	Nonsense_Mutation	T	A	p.R176X
LIHC	TCGA-EP-A2KA-01	STK32B	ENST00000512018.1,ENST00000510398.1,ENST00000505508.1,ENST00000282908.5	chr4	5332946:5333120:5399933:5399971:5418571:5418661,	5399934	5399971	5399971	5399971	Nonsense_Mutation	G	T	p.G158X
LIHC	TCGA-EP-A2KA-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87688969:87689129:87690921:87691136:87691253:87691352,	87690922	87691136	87690933	87690933	Nonsense_Mutation	G	T	p.E1506X
LIHC	TCGA-EP-A2KA-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000337620.4	chr7	26245987:26246130:26248012:26248175:26251281:26251337,	26248013	26248175	26248156	26248156	Nonsense_Mutation	C	A	p.S104X
LIHC	TCGA-EP-A2KA-01	CBX3	ENST00000409747.1	chr7	26245987:26246130:26248085:26248175:26251281:26251337,	26248086	26248175	26248156	26248156	Nonsense_Mutation	C	A	p.S104X
LIHC	TCGA-EP-A2KA-01	CDK6	ENST00000265734.4,ENST00000424848.2	chr7	92252349:92252400:92300739:92300849:92354939:92355024,	92300740	92300849	92300836	92300836	Nonsense_Mutation	C	T	p.W184X
LIHC	TCGA-EP-A2KA-01	TNKS1BP1	ENST00000427750.2,ENST00000532437.1,ENST00000358252.3	chr11	57069280:57069417:57069547:57069698:57069932:57070299,	57069548	57069698	57069548	57069548	Nonsense_Mutation	C	A	p.E1612X
LIHC	TCGA-EP-A2KA-01	TMPRSS13	ENST00000528626.1,ENST00000524993.1,ENST00000430170.2,ENST00000526090.1,ENST00000445164.2	chr11	117779326:117779499:117780520:117780683:117781421:117781465,	117780521	117780683	117780678	117780678	Nonsense_Mutation	C	A	p.G318X
LIHC	TCGA-EP-A2KA-01	PLEKHA5	ENST00000538068.1,ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000538972.1,ENST00000539256.1,ENST00000429027.2,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19475451:19475601:19489448:19489550:19496256:19496350,	19489449	19489550	19489449	19489449	Nonsense_Mutation	G	T	p.E817X
LIHC	TCGA-EP-A2KA-01	ADCK1	ENST00000341211.5,ENST00000238561.5	chr14	78365442:78365601:78374145:78374262:78390799:78390855,	78374146	78374262	78374194	78374194	Nonsense_Mutation	G	T	p.E264X
LIHC	TCGA-EP-A2KA-01	MFGE8	ENST00000560937.1,ENST00000566497.1,ENST00000558018.1,ENST00000542878.1,ENST00000539437.1,ENST00000268150.8	chr15	89442691:89442763:89442886:89443042:89444781:89444869,	89442887	89443042	89442944	89442944	Nonsense_Mutation	G	T	p.Y323X
LIHC	TCGA-DD-AAE3-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000309536.2,ENST00000520818.1,ENST00000522181.1	chr8	92307851:92307931:92330443:92330608:92346522:92346675,	92330444	92330608	92330492	92330492	Nonsense_Mutation	G	T	p.E176X
LIHC	TCGA-DD-AAE3-01	UBFD1	ENST00000395878.3,ENST00000563366.1,ENST00000565634.1,ENST00000219638.4,ENST00000567212.1	chr16	23573945:23574051:23578307:23578390:23581800:23581896,	23578308	23578390	23578364	23578364	Nonsense_Mutation	G	T	p.E265X
LIHC	TCGA-BW-A5NQ-01	NBEA	ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3	chr13	35691550:35691630:35692364:35692427:35692513:35692611,	35692365	35692427	35692392	35692392	Nonsense_Mutation	C	T	p.Q704X
LIHC	TCGA-BW-A5NQ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192X
LIHC	TCGA-2Y-A9H2-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219362748:219362880:219374701:219374863:219394678:219394763,	219374702	219374863	219374706	219374706	Nonsense_Mutation	G	A	p.Q341X
LIHC	TCGA-2Y-A9H2-01	PLEKHA5	ENST00000543806.1	chr12	19440406:19440490:19467747:19467828:19473495:19473519,	19467748	19467828	19467760	19467760	Nonsense_Mutation	G	T	p.E684X
LIHC	TCGA-DD-A73G-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16095022:16095125:16096903:16097073:16101112:16101126,	16096904	16097073	16096974	16096974	Nonsense_Mutation	C	G	p.Y204X
LIHC	TCGA-WQ-A9G7-01	CDC7	ENST00000428239.1,ENST00000234626.6,ENST00000430031.2	chr1	91981350:91981433:91985686:91985836:91989597:91990056,	91985687	91985836	91985737	91985737	Nonsense_Mutation	C	T	p.R411X
LIHC	TCGA-WQ-A9G7-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186134245:186134305:186135315:186135435:186135939:186136074,	186135316	186135435	186135392	186135392	Nonsense_Mutation	C	A	p.C5132X
LIHC	TCGA-WQ-A9G7-01	DHX15	ENST00000336812.4	chr4	24572276:24572470:24577865:24578301:24585945:24586160,	24577866	24578301	24578249	24578249	Nonsense_Mutation	G	A	p.R42X
LIHC	TCGA-WQ-A9G7-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000538174.2	chr12	70980786:70981047:70983743:70984013:70986061:70986325,	70983744	70984013	70983921	70983921	Nonsense_Mutation	G	A	p.Q625X
LIHC	TCGA-WQ-A9G7-01	TOP2A	ENST00000423485.1	chr17	38563800:38563926:38564218:38564376:38564743:38564882,	38564219	38564376	38564371	38564371	Nonsense_Mutation	G	A	p.R450X
LIHC	TCGA-RC-A6M3-01	SGCZ	ENST00000382080.1	chr8	14095100:14095188:14181611:14181713:14412240:14412435,	14181612	14181713	14181674	14181674	Nonsense_Mutation	G	A	p.R92X
LIHC	TCGA-2Y-A9GU-01	AKAP6	ENST00000280979.4,ENST00000557354.1,ENST00000557272.1	chr14	33014435:33016205:33046325:33046448:33068615:33068712,	33046326	33046448	33046347	33046347	Nonsense_Mutation	G	T	p.E790X
LIHC	TCGA-2Y-A9H1-01	CDCP1	ENST00000296129.1	chr3	45130545:45130633:45132664:45133030:45134768:45135149,	45132665	45133030	45132884	45132884	Nonsense_Mutation	T	A	p.K592X
LIHC	TCGA-2Y-A9H1-01	KLHDC1	ENST00000556392.1,ENST00000359332.2	chr14	50190591:50190670:50192403:50192487:50195643:50195727,	50192404	50192487	50192421	50192421	Nonsense_Mutation	G	A	p.W167X
LIHC	TCGA-2Y-A9H7-01	CIZ1	ENST00000491954.1,ENST00000415526.1,ENST00000325721.8	chr9	130942726:130942802:130942999:130943078:130947825:130947954,	130943000	130943078	130943066	130943066	Nonsense_Mutation	C	A	p.E236X
LIHC	TCGA-2Y-A9H7-01	CIZ1	ENST00000357558.5,ENST00000393608.1,ENST00000372938.5,ENST00000541172.1,ENST00000277465.4,ENST00000488559.2,ENST00000498156.1,ENST00000538431.1,ENST00000372948.3,ENST00000372954.1,ENST00000324544.2,ENST00000476727.2	chr9	130942726:130942802:130942999:130943093:130947825:130947954,	130943000	130943093	130943066	130943066	Nonsense_Mutation	C	A	p.E236X
LIHC	TCGA-2Y-A9GZ-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251871	81251871	Nonsense_Mutation	C	A	p.E527X
LIHC	TCGA-FV-A2QQ-01	ZMYND12	ENST00000372565.3	chr1	42905526:42905696:42914137:42914309:42915588:42915730,	42914138	42914309	42914268	42914268	Nonsense_Mutation	G	T	p.Y98X
LIHC	TCGA-DD-A1EE-01	SRM	ENST00000459997.1	chr1	11118856:11118949:11119281:11119437:11119833:11120077,	11119282	11119437	11119332	11119332	Nonsense_Mutation	G	A	p.Q80X
LIHC	TCGA-DD-A1EE-01	SRM	ENST00000376957.2	chr1	11118856:11118949:11119281:11119402:11119833:11120077,	11119282	11119402	11119332	11119332	Nonsense_Mutation	G	A	p.Q80X
LIHC	TCGA-DD-A1EE-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209788321:209788752:209789815:209789969:209790754:209790922,	209789816	209789969	209789918	209789918	Nonsense_Mutation	G	A	p.Q1094X
LIHC	TCGA-DD-A1EE-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2,ENST00000431162.2	chr3	39171569:39171642:39171738:39171849:39172191:39172330,	39171739	39171849	39171742	39171742	Nonsense_Mutation	G	T	p.E745X
LIHC	TCGA-DD-A1EE-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662939	52662939	Nonsense_Mutation	G	A	p.R472X
LIHC	TCGA-DD-A1EE-01	GUSB	ENST00000421103.1	chr7	65439512:65439691:65439905:65440058:65441001:65441189,65439512:65439691:65439905:65440058:65444820:65444898,	65439906	65440058	65440043	65440043	Nonsense_Mutation	G	A	p.Q310X
LIHC	TCGA-DD-A1EE-01	RFX3	ENST00000358730.2,ENST00000382004.3,ENST00000449190.1,ENST00000302303.1,ENST00000457373.1,ENST00000451859.1	chr9	3330316:3330517:3346666:3346764:3395471:3395588,	3346667	3346764	3346710	3346710	Nonsense_Mutation	G	A	p.Q58X
LIHC	TCGA-DD-A1EE-01	B4GALNT3	ENST00000535402.1,ENST00000266383.5	chr12	667673:667827:668460:668587:670508:672664,	668461	668587	668557	668557	Nonsense_Mutation	G	A	p.W953X
LIHC	TCGA-DD-A1EE-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425574	77425574	Nonsense_Mutation	C	A	p.E1284X
LIHC	TCGA-DD-A1EE-01	RHCG	ENST00000560081.1,ENST00000544600.1,ENST00000558184.1,ENST00000268122.4	chr15	90022552:90022719:90023491:90023639:90026297:90026448,	90023492	90023639	90023512	90023512	Nonsense_Mutation	G	T	p.S217X
LIHC	TCGA-DD-A1EE-01	TSC2	ENST00000461648.2,ENST00000353929.4,ENST00000350773.4,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2098033:2098066:2098587:2098754:2100400:2100487,	2098588	2098754	2098719	2098719	Nonsense_Mutation	C	T	p.Q35X
LIHC	TCGA-DD-A1EE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577107	7577107	Nonsense_Mutation	A	T	p.C277X
LIHC	TCGA-DD-A1EE-01	POLR3H	ENST00000337566.5	chr22	41926690:41926892:41928097:41928161:41936702:41936799,	41928098	41928161	41928119	41928119	Nonsense_Mutation	G	T	p.S113X
LIHC	TCGA-DD-AAVR-01	SF3B3	ENST00000302516.5,ENST00000565990.2	chr16	70603908:70604052:70604997:70605102:70605575:70606202,	70604998	70605102	70605100	70605100	Nonsense_Mutation	A	T	p.K1171X
LIHC	TCGA-DD-A1ED-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402917	52402917	Nonsense_Mutation	C	A	p.E30X
LIHC	TCGA-DD-AACK-01	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36269664	36269664	Nonsense_Mutation	A	T	p.K268X
LIHC	TCGA-DD-AACK-01	ARHGEF7	ENST00000478679.1,ENST00000375737.5,ENST00000375739.2,ENST00000483189.1,ENST00000370623.3,ENST00000375741.2,ENST00000375723.1,ENST00000466143.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5	chr13	111919894:111920017:111926160:111926299:111927077:111927137,	111926161	111926299	111926288	111926288	Nonsense_Mutation	A	T	p.R422X
LIHC	TCGA-DD-AAD0-01	TMEM87B	ENST00000283206.4	chr2	112838633:112838695:112838911:112839095:112843581:112843681,	112838912	112839095	112839010	112839010	Nonsense_Mutation	G	A	p.W251X
LIHC	TCGA-DD-AAD0-01	DCN	ENST00000052754.5,ENST00000393155.1,ENST00000552962.1	chr12	91550851:91550965:91552072:91552286:91558381:91558494,	91552073	91552286	91552214	91552214	Nonsense_Mutation	G	A	p.R133X
LIHC	TCGA-CC-A3MC-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662452	40662452	Nonsense_Mutation	C	T	p.Q740X
LIHC	TCGA-WJ-A86L-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204X
LIHC	TCGA-DD-AADD-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515342	183515342	Nonsense_Mutation	G	A	p.W871X
LIHC	TCGA-DD-A1EG-01	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	33946429:33946515:33976900:33977000:34006090:34006173,	33976901	33977000	33976996	33976996	Nonsense_Mutation	C	A	p.C105X
LIHC	TCGA-DD-A1EG-01	PCBP3	ENST00000400304.1,ENST00000400310.1,ENST00000400305.1,ENST00000400309.1,ENST00000400308.1,ENST00000449640.1,ENST00000400314.1	chr21	47320504:47320537:47320910:47321027:47329268:47329400,	47320911	47321027	47320946	47320946	Nonsense_Mutation	C	A	p.C86X
LIHC	TCGA-DD-A1EG-01	CLTCL1	ENST00000263200.10,ENST00000413132.2,ENST00000353891.5	chr22	19187244:19187352:19188839:19189004:19195663:19195821,	19188840	19189004	19189001	19189001	Nonsense_Mutation	C	A	p.G1202X
LIHC	TCGA-DD-A1EG-01	CLTCL1	ENST00000505027.2	chr22	19187244:19187352:19188901:19189004:19195663:19195821,	19188902	19189004	19189001	19189001	Nonsense_Mutation	C	A	p.G1202X
LIHC	TCGA-UB-A7MF-01	DISC1	ENST00000366633.3,ENST00000366632.2,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000422590.2,ENST00000602713.1,ENST00000602822.1,ENST00000366637.3	chr1	231906580:231906816:231930987:231931042:231935853:231935956,	231930988	231931042	231931028	231931028	Nonsense_Mutation	G	T	p.E591X
LIHC	TCGA-DD-AADS-01	BBOX1	ENST00000529202.1,ENST00000263182.3,ENST00000528583.1,ENST00000525090.1	chr11	27078747:27078862:27114714:27114913:27136998:27137104,	27114715	27114913	27114795	27114795	Nonsense_Mutation	A	T	p.K139X
LIHC	TCGA-DD-AADS-01	SLCO3A1	ENST00000553653.1,ENST00000424469.2,ENST00000555769.1,ENST00000318445.6	chr15	92638110:92638209:92647508:92647772:92663694:92663859,	92647509	92647772	92647605	92647605	Nonsense_Mutation	T	A	p.L281X
LIHC	TCGA-DD-AADS-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347192	347192	Nonsense_Mutation	T	A	p.K607X
LIHC	TCGA-DD-AADS-01	NF2	ENST00000361676.4	chr22	30032739:30032865:30035078:30035201:30038190:30038274,29999987:30000101:30035078:30035201:30038190:30038274,	30035079	30035201	30035160	30035160	Nonsense_Mutation	G	T	p.E108X
LIHC	TCGA-DD-A3A9-01	RPAP2	ENST00000610020.1	chr1	92786155:92786191:92789001:92789932:92798947:92799030,	92789002	92789932	92789745	92789745	Nonsense_Mutation	G	A	p.W423X
LIHC	TCGA-DD-A3A9-01	MIA3	ENST00000344922.5,ENST00000354906.3,ENST00000340535.7	chr1	222818895:222819027:222822170:222822192:222823633:222823657,	222822171	222822192	222822189	222822189	Nonsense_Mutation	C	T	p.Q1210X
LIHC	TCGA-DD-A3A9-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17614104:17614258:17616190:17616309:17617221:17617371,	17616191	17616309	17616198	17616198	Nonsense_Mutation	C	A	p.E384X
LIHC	TCGA-DD-A3A9-01	SEC14L4	ENST00000320982.3,ENST00000392772.2	chr22	30891914:30891958:30899663:30899755:30901544:30901637,	30899664	30899755	30899672	30899672	Nonsense_Mutation	C	T	p.W41X
LIHC	TCGA-DD-A3A9-01	SEC14L4	ENST00000321205.5,ENST00000540456.1,ENST00000381982.3	chr22	30891914:30891958:30899663:30899739:30901544:30901637,	30899664	30899739	30899672	30899672	Nonsense_Mutation	C	T	p.W41X
LIHC	TCGA-DD-A4NO-01	NFE2L2	ENST00000423513.1,ENST00000446151.2,ENST00000397063.4	chr2	178097977:178098067:178098732:178098999:178129259:178129387,178097977:178098067:178098732:178098999:178128130:178128182,	178098733	178098999	178098810	178098810	Nonsense_Mutation	C	A	p.E79X
LIHC	TCGA-LG-A9QD-01	ULK3	ENST00000566631.1,ENST00000568273.1,ENST00000561725.1,ENST00000440863.2,ENST00000570276.1,ENST00000568667.1,ENST00000568210.1,ENST00000569437.1	chr15	75130492:75130533:75130606:75130685:75130780:75130843,	75130607	75130685	75130667	75130667	Nonsense_Mutation	C	A	p.E396X
LIHC	TCGA-G3-A7M8-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532454	3532454	Nonsense_Mutation	C	T	p.Q350X
LIHC	TCGA-DD-AAVU-01	AXIN1	ENST00000354866.3,ENST00000481769.1,ENST00000461023.1,ENST00000262320.3	chr16	354303:354441:359972:360069:364542:364683,	359973	360069	360038	360038	Nonsense_Mutation	G	A	p.Q351X
LIHC	TCGA-DD-A3A8-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112102885:112103087:112111325:112111434:112116486:112116600,	112111326	112111434	112111380	112111380	Nonsense_Mutation	C	G	p.Y169X
LIHC	TCGA-G3-A25S-01	PLD5	ENST00000442594.2,ENST00000366545.4	chr1	242428663:242428750:242451663:242451832:242511407:242511544,242428663:242428750:242451663:242451832:242511400:242511544,	242451664	242451832	242451667	242451667	Nonsense_Mutation	A	T	p.C164X
LIHC	TCGA-G3-A25S-01	RHCG	ENST00000560081.1,ENST00000544600.1,ENST00000558184.1,ENST00000268122.4	chr15	90022552:90022719:90023491:90023639:90026297:90026448,	90023492	90023639	90023512	90023512	Nonsense_Mutation	G	T	p.S217X
LIHC	TCGA-ZP-A9CV-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230548	46230548	Nonsense_Mutation	G	A	p.W266X
LIHC	TCGA-ZP-A9CV-01	RPS6KA3	ENST00000479809.1,ENST00000379548.4,ENST00000540702.1,ENST00000544447.1,ENST00000379565.3	chrX	20185706:20185865:20187519:20187609:20190863:20190982,	20187520	20187609	20187600	20187600	Nonsense_Mutation	T	A	p.K455X
LIHC	TCGA-G3-A5SM-01	ITPK1	ENST00000557309.1,ENST00000267615.6,ENST00000556603.2,ENST00000555553.1,ENST00000553452.1,ENST00000354313.3	chr14	93460224:93460342:93542939:93542964:93581413:93581529,93483020:93483146:93542939:93542964:93581413:93581529,	93542940	93542964	93542960	93542960	Nonsense_Mutation	G	A	p.R34X
LIHC	TCGA-CC-A8HT-01	RGS5	ENST00000530507.1	chr1	163117263:163117293:163122327:163122506:163131704:163131766,	163122328	163122506	163122329	163122329	Nonsense_Mutation	C	T	p.W132X
LIHC	TCGA-CC-A8HT-01	FAM3C	ENST00000359943.3,ENST00000412653.1,ENST00000426156.1	chr7	121000145:121000181:121002950:121003001:121004183:121004242,	121002951	121003001	121002990	121002990	Nonsense_Mutation	C	A	p.E115X
LIHC	TCGA-CC-A8HT-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805355	22805355	Nonsense_Mutation	C	A	p.G843X
LIHC	TCGA-CC-A8HT-01	EFCAB6	ENST00000404038.1,ENST00000262726.7	chr22	44161184:44161273:44168771:44168983:44178059:44178205,	44168772	44168983	44168801	44168801	Nonsense_Mutation	G	A	p.R108X
LIHC	TCGA-CC-A8HT-01	TRO	ENST00000319167.8,ENST00000445561.1,ENST00000375022.4,ENST00000173898.7	chrX	54948650:54948724:54949010:54950201:54950883:54950988,	54949011	54950201	54949458	54949458	Nonsense_Mutation	C	T	p.Q165X
LIHC	TCGA-DD-A73E-01	TARS	ENST00000502553.1,ENST00000265112.3,ENST00000514259.1	chr5	33445429:33445510:33448646:33448837:33453398:33453517,33445429:33445510:33448646:33448837:33453393:33453451,	33448647	33448837	33448802	33448802	Nonsense_Mutation	G	A	p.W98X
LIHC	TCGA-ED-A7PZ-01	MIB2	ENST00000360522.4,ENST00000514234.1	chr1	1560665:1560808:1560925:1561033:1562029:1562134,1560665:1560808:1560925:1561033:1562216:1562309,	1560926	1561033	1561031	1561031	Nonsense_Mutation	A	T	p.K439X
LIHC	TCGA-ED-A7PZ-01	MIB2	ENST00000520777.1	chr1	1560665:1560808:1560937:1561033:1562029:1562134,	1560938	1561033	1561031	1561031	Nonsense_Mutation	A	T	p.K439X
LIHC	TCGA-ED-A7PZ-01	MIB2	ENST00000479659.1	chr1	1560665:1560808:1560925:1562134:1562216:1562309,	1560926	1562134	1561031	1561031	Nonsense_Mutation	A	T	p.K439X
LIHC	TCGA-DD-A3A1-01	IL18	ENST00000528832.1,ENST00000280357.7	chr11	112019325:112019459:112020794:112020929:112025697:112025784,112019325:112019459:112020794:112020929:112024314:112024326,	112020795	112020929	112020884	112020884	Nonsense_Mutation	G	C	p.S46X
LIHC	TCGA-DD-A3A1-01	HEXA	ENST00000567159.1,ENST00000567411.1,ENST00000268097.5,ENST00000566672.1,ENST00000429918.2,ENST00000566304.1	chr15	72638575:72638666:72638867:72639051:72640388:72640471,72638643:72638666:72638867:72639051:72640026:72640099,	72638868	72639051	72638893	72638893	Nonsense_Mutation	G	C	p.Y435X
LIHC	TCGA-RC-A7SF-01	EGF	ENST00000509996.1	chr4	110920834:110921002:110925660:110925778:110929307:110929386,110920834:110921002:110925660:110925778:110932357:110932464,	110925661	110925778	110925746	110925746	Nonsense_Mutation	G	T	p.E1087X
LIHC	TCGA-G3-A5SJ-01	CCDC138	ENST00000295124.4,ENST00000412964.2	chr2	109404487:109404545:109405307:109405422:109408130:109408258,	109405308	109405422	109405347	109405347	Nonsense_Mutation	C	A	p.S64X
LIHC	TCGA-DD-AACI-01	GIN1	ENST00000512248.1,ENST00000399004.2	chr5	102423829:102423876:102432244:102432530:102433017:102433194,	102432245	102432530	102432263	102432263	Nonsense_Mutation	T	A	p.R426X
LIHC	TCGA-DD-AACI-01	WDR45	ENST00000396681.4,ENST00000473974.1,ENST00000322995.8,ENST00000465382.1,ENST00000376372.3	chrX	48933524:48933604:48935301:48935406:48935495:48935570,48934303:48934412:48935301:48935406:48935495:48935570,48934303:48934409:48935301:48935406:48935495:48935570,	48935302	48935406	48935320	48935320	Nonsense_Mutation	T	A	p.K73X
LIHC	TCGA-EP-A2KB-01	AGO4	ENST00000373210.3	chr1	36297657:36297786:36298037:36298171:36299590:36299775,	36298038	36298171	36298149	36298149	Nonsense_Mutation	C	T	p.Q453X
LIHC	TCGA-EP-A2KB-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64779485	64779485	Nonsense_Mutation	G	T	p.G293X
LIHC	TCGA-EP-A2KB-01	CTNNA2	ENST00000466387.1,ENST00000496558.1,ENST00000402739.4,ENST00000541047.1,ENST00000361291.4,ENST00000540488.1	chr2	79971512:79971708:80085138:80085305:80096941:80097061,	80085139	80085305	80085187	80085187	Nonsense_Mutation	C	A	p.S116X
LIHC	TCGA-EP-A2KB-01	IL31RA	ENST00000354961.4,ENST00000396836.2,ENST00000447346.2,ENST00000396834.1,ENST00000359040.5	chr5	55155336:55155427:55164618:55164736:55168097:55168279,	55164619	55164736	55164685	55164685	Nonsense_Mutation	G	A	p.W74X
LIHC	TCGA-EP-A2KB-01	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36270243	36270243	Nonsense_Mutation	C	T	p.Q461X
LIHC	TCGA-EP-A2KB-01	DNHD1	ENST00000254579.6,ENST00000530197.1,ENST00000529821.1,ENST00000527990.2	chr11	6591238:6591330:6591476:6591626:6591847:6592653,	6591477	6591626	6591490	6591490	Nonsense_Mutation	C	A	p.Y4323X
LIHC	TCGA-EP-A2KB-01	BIRC3	ENST00000263464.3,ENST00000532808.1	chr11	102201729:102201972:102206696:102206951:102207490:102207532,	102206697	102206951	102206786	102206786	Nonsense_Mutation	G	T	p.G472X
LIHC	TCGA-EP-A2KB-01	TC2N	ENST00000340892.5,ENST00000360594.5,ENST00000435962.2	chr14	92253856:92253971:92258710:92258902:92264128:92264240,	92258711	92258902	92258866	92258866	Nonsense_Mutation	T	A	p.K298X
LIHC	TCGA-EP-A2KB-01	C17orf75	ENST00000583221.1	chr17	30665228:30665370:30666831:30666943:30668222:30668303,	30666832	30666943	30666839	30666839	Nonsense_Mutation	C	A	p.E114X
LIHC	TCGA-EP-A2KB-01	C17orf75	ENST00000577809.1,ENST00000225805.4,ENST00000581747.1,ENST00000580558.1,ENST00000582073.1,ENST00000583774.1,ENST00000580485.1	chr17	30665228:30665370:30666831:30666957:30668222:30668303,	30666832	30666957	30666839	30666839	Nonsense_Mutation	C	A	p.E114X
LIHC	TCGA-EP-A2KB-01	TMEM104	ENST00000335464.5,ENST00000582330.1	chr17	72791662:72791771:72815888:72815982:72832065:72835892,	72815889	72815982	72815910	72815910	Nonsense_Mutation	G	T	p.G220X
LIHC	TCGA-EP-A2KB-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359573	19359573	Nonsense_Mutation	C	A	p.Y1234X
LIHC	TCGA-EP-A2KB-01	PATZ1	ENST00000266269.5	chr22	31723062:31723295:31724772:31724910:31731677:31731849,	31724773	31724910	31724792	31724792	Nonsense_Mutation	G	A	p.Q521X
LIHC	TCGA-EP-A2KB-01	PATZ1	ENST00000405309.3	chr22	31723062:31723295:31724772:31724845:31731677:31731849,	31724773	31724845	31724792	31724792	Nonsense_Mutation	G	A	p.Q521X
LIHC	TCGA-EP-A2KB-01	MID2	ENST00000262843.6,ENST00000443968.2	chrX	107083899:107084615:107097838:107097934:107147187:107147295,	107097839	107097934	107097839	107097839	Nonsense_Mutation	C	T	p.Q241X
LIHC	TCGA-EP-A2KB-01	ZNF75D	ENST00000370766.3	chrX	134425397:134425489:134426206:134426399:134427655:134428184,	134426207	134426399	134426381	134426381	Nonsense_Mutation	C	A	p.G144X
LIHC	TCGA-CC-A7IL-01	CES1	ENST00000360526.3	chr16	55860062:55860207:55862678:55862886:55866915:55867008,	55862679	55862886	55862715	55862715	Nonsense_Mutation	C	T	p.W75X
LIHC	TCGA-CC-A7IL-01	CES1	ENST00000422046.2,ENST00000361503.4	chr16	55860062:55860207:55862678:55862883:55866915:55867008,	55862679	55862883	55862715	55862715	Nonsense_Mutation	C	T	p.W75X
LIHC	TCGA-DD-AAEA-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64868010	64868010	Nonsense_Mutation	C	G	p.S289X
LIHC	TCGA-DD-A4NG-01	NBAS	ENST00000281513.5,ENST00000442506.1,ENST00000441750.1	chr2	15374668:15374871:15378591:15378810:15415607:15415942,	15378592	15378810	15378653	15378653	Nonsense_Mutation	G	C	p.S1961X
LIHC	TCGA-G3-A5SI-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56831809:56832025:56835228:56835294:56837435:56837574,	56835229	56835294	56835289	56835289	Nonsense_Mutation	C	T	p.Q369X
LIHC	TCGA-G3-A5SI-01	NFX1	ENST00000379521.4,ENST00000318524.6	chr9	33290542:33290595:33294417:33295425:33301260:33301419,	33294418	33295425	33295194	33295194	Nonsense_Mutation	C	T	p.R268X
LIHC	TCGA-CC-A7II-01	ESR1	ENST00000440973.1	chr6	152023009:152023140:152128977:152129499:152163731:152163922,	152128978	152129499	152129176	152129176	Nonsense_Mutation	C	A	p.Y43X
LIHC	TCGA-CC-A7II-01	POLR3D	ENST00000397802.4,ENST00000306433.4,ENST00000519237.1,ENST00000517789.1	chr8	22105369:22105521:22105666:22105791:22105993:22106130,	22105667	22105791	22105780	22105780	Nonsense_Mutation	G	T	p.E159X
LIHC	TCGA-CC-A7IG-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578188	7578188	Nonsense_Mutation	C	A	p.E221X
LIHC	TCGA-CC-A7IG-01	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43796312	43796312	Nonsense_Mutation	A	T	p.K156X
LIHC	TCGA-CC-A7IG-01	TTLL9	ENST00000375938.4,ENST00000375922.4,ENST00000535842.1,ENST00000310998.4,ENST00000375934.4	chr20	30521602:30521661:30522494:30522691:30525198:30525312,	30522495	30522691	30522615	30522615	Nonsense_Mutation	C	T	p.Q310X
LIHC	TCGA-CC-5262-01	ATP1A2	ENST00000392233.3,ENST00000447527.1,ENST00000361216.3,ENST00000472488.1	chr1	160100211:160100387:160104273:160104410:160104934:160105085,	160104274	160104410	160104352	160104352	Nonsense_Mutation	G	T	p.E636X
LIHC	TCGA-DD-AAVS-01	AXIN1	ENST00000354866.3,ENST00000481769.1,ENST00000461023.1,ENST00000262320.3	chr16	347843:348251:354303:354441:359972:360069,	354304	354441	354369	354369	Nonsense_Mutation	C	A	p.E397X
LIHC	TCGA-DD-AAVS-01	TMEM241	ENST00000582336.1,ENST00000577531.1,ENST00000383233.3,ENST00000542162.1,ENST00000473688.1,ENST00000578520.1	chr18	20979529:20979611:21001330:21001408:21017744:21017817,20964953:20965031:21001330:21001408:21010594:21010641,20979529:20979611:21001330:21001408:21010594:21010641,	21001331	21001408	21001406	21001406	Nonsense_Mutation	C	T	p.W41X
LIHC	TCGA-BC-A10W-01	C1orf198	ENST00000366663.5,ENST00000523410.1,ENST00000470540.1	chr1	230975366:230975654:230979099:230979642:230991413:230991464,	230979100	230979642	230979276	230979276	Nonsense_Mutation	C	A	p.E251X
LIHC	TCGA-BC-A10W-01	LARP1B	ENST00000326639.6,ENST00000503725.1,ENST00000264584.5,ENST00000507259.1,ENST00000354456.3,ENST00000506199.1	chr4	129121748:129121820:129127582:129127692:129128410:129128538,	129127583	129127692	129127685	129127685	Nonsense_Mutation	C	A	p.Y804X
LIHC	TCGA-BC-A10W-01	RICTOR	ENST00000511516.1	chr5	38975638:38975706:38978684:38978750:38981968:38982138,	38978685	38978750	38978735	38978735	Nonsense_Mutation	A	T	p.Y257X
LIHC	TCGA-BC-A10W-01	RICTOR	ENST00000357387.3,ENST00000510711.1,ENST00000296782.5	chr5	38975638:38975706:38978684:38978752:38981968:38982138,	38978685	38978752	38978735	38978735	Nonsense_Mutation	A	T	p.Y257X
LIHC	TCGA-BD-A3EP-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370636	240370636	Nonsense_Mutation	G	T	p.E842X
LIHC	TCGA-BD-A3EP-01	PKP4	ENST00000421462.1,ENST00000426248.3	chr2	159477742:159477933:159481466:159481939:159488264:159488444,	159481467	159481939	159481873	159481873	Nonsense_Mutation	C	T	p.Q363X
LIHC	TCGA-BD-A3EP-01	PKP4	ENST00000481115.2	chr2	159477742:159477933:159481636:159481939:159488264:159488444,	159481637	159481939	159481873	159481873	Nonsense_Mutation	C	T	p.Q363X
LIHC	TCGA-BD-A3EP-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1	chr2	159477742:159477933:159481389:159481939:159488264:159488444,	159481390	159481939	159481873	159481873	Nonsense_Mutation	C	T	p.Q363X
LIHC	TCGA-CC-A123-01	TMTC2	ENST00000321196.3,ENST00000548305.1	chr12	83081259:83081448:83250788:83251359:83289596:83290425,	83250789	83251359	83250808	83250808	Nonsense_Mutation	C	T	p.Q35X
LIHC	TCGA-K7-A5RG-01	HACL1	ENST00000456194.2,ENST00000435217.2,ENST00000422591.1,ENST00000383779.4,ENST00000321169.5,ENST00000451445.2	chr3	15609938:15610093:15613174:15613276:15614665:15614749,	15613175	15613276	15613198	15613198	Nonsense_Mutation	T	A	p.K358X
LIHC	TCGA-G3-A3CK-01	PI4KB	ENST00000368874.4,ENST00000489223.2,ENST00000368872.1	chr1	151278739:151278839:151280049:151280277:151288048:151288148,	151280050	151280277	151280253	151280253	Nonsense_Mutation	C	A	p.E339X
LIHC	TCGA-G3-A3CK-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000468939.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58140517:58140655:58141686:58141802:58145280:58145413,	58141687	58141802	58141694	58141694	Nonsense_Mutation	C	G	p.Y2291X
LIHC	TCGA-G3-A3CK-01	ELL2	ENST00000513343.1	chr5	95236396:95236484:95236659:95236784:95242226:95242486,95236396:95236484:95236659:95236784:95278705:95278717,	95236660	95236784	95236730	95236730	Nonsense_Mutation	T	A	p.K266X
LIHC	TCGA-DD-A3A7-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73679798	73679798	Nonsense_Mutation	T	A	p.Y2047X
LIHC	TCGA-DD-A39Z-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144890960	144890960	Nonsense_Mutation	C	T	p.W645X
LIHC	TCGA-DD-A39Z-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000450149.2,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3	chr16	71795414:71795470:71798252:71798351:71798548:71798578,	71798253	71798351	71798318	71798318	Nonsense_Mutation	C	A	p.G288X
LIHC	TCGA-DD-A39Z-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40853607	40853607	Nonsense_Mutation	C	A	p.G263X
LIHC	TCGA-G3-AAV4-01	FGFRL1	ENST00000398484.2,ENST00000510644.1,ENST00000504138.1,ENST00000264748.6,ENST00000507339.1	chr4	1015990:1016263:1017428:1017509:1017604:1017628,	1017429	1017509	1017449	1017449	Nonsense_Mutation	G	T	p.E125X
LIHC	TCGA-2Y-A9GV-01	CES2	ENST00000568470.1	chr16	66969466:66969614:66971939:66972144:66973119:66973261,66968373:66969879:66971939:66972144:66973119:66973261,	66971940	66972144	66971949	66971949	Nonsense_Mutation	C	G	p.S93X
LIHC	TCGA-CC-A9FW-01	SUV39H2	ENST00000378325.3,ENST00000354919.6	chr10	14920920:14920959:14923498:14923644:14938844:14938976,14920887:14920918:14923498:14923644:14938844:14938976,	14923499	14923644	14923615	14923615	Nonsense_Mutation	G	T	p.E50X
LIHC	TCGA-CC-A9FW-01	RPS6KA3	ENST00000479809.1,ENST00000379548.4,ENST00000540702.1,ENST00000544447.1,ENST00000379565.3	chrX	20174226:20174367:20179761:20179879:20181081:20181158,	20179762	20179879	20179839	20179839	Nonsense_Mutation	C	A	p.E628X
LIHC	TCGA-DD-A1EA-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662939	52662939	Nonsense_Mutation	G	A	p.R472X
LIHC	TCGA-DD-A1EA-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425574	77425574	Nonsense_Mutation	C	A	p.E1284X
LIHC	TCGA-XR-A8TG-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000432347.2,ENST00000354456.3,ENST00000394288.3,ENST00000427266.1,ENST00000512292.1,ENST00000507377.1	chr4	129012501:129012667:129019340:129019485:129028293:129028468,	129019341	129019485	129019441	129019441	Nonsense_Mutation	C	T	p.Q257X
LIHC	TCGA-DD-AADV-01	WDR90	ENST00000550902.1,ENST00000549091.1,ENST00000552728.1,ENST00000549024.1,ENST00000547407.1,ENST00000546923.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1	chr16	711731:711787:711890:712059:712219:712224,	711891	712059	712038	712038	Nonsense_Mutation	G	T	p.E1338X
LIHC	TCGA-G3-A3CH-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357553	50357553	Nonsense_Mutation	A	T	p.L463X
LIHC	TCGA-DD-AADC-01	AMELX	ENST00000380712.3	chrX	11314898:11314946:11316222:11316264:11316355:11316397,	11316223	11316264	11316227	11316227	Nonsense_Mutation	C	G	p.S36X
LIHC	TCGA-DD-A11C-01	IL12RB1	ENST00000593993.2,ENST00000322153.7,ENST00000600835.2	chr19	18187106:18187137:18188325:18188465:18191641:18191811,	18188326	18188465	18188364	18188364	Nonsense_Mutation	G	A	p.Q171X
LIHC	TCGA-BW-A5NP-01	PGR	ENST00000534780.1,ENST00000526300.1,ENST00000263463.5	chr11	100962490:100962607:100996737:100996889:100998164:100999801,	100996738	100996889	100996842	100996842	Nonsense_Mutation	A	C	p.L562X
LIHC	TCGA-G3-AAV6-01	UBA52	ENST00000596304.1,ENST00000598780.1,ENST00000430157.2,ENST00000442744.2,ENST00000594527.1,ENST00000599595.1,ENST00000596272.1,ENST00000595158.1,ENST00000596273.1,ENST00000595683.1,ENST00000597451.1,ENST00000599551.1	chr19	18684185:18684213:18684471:18684558:18685679:18685778,	18684472	18684558	18684552	18684552	Nonsense_Mutation	C	T	p.Q62X
LIHC	TCGA-ED-A97K-01	PTPN4	ENST00000263708.2,ENST00000544261.1,ENST00000430976.1	chr2	120709548:120709705:120712732:120712899:120714419:120714510,	120712733	120712899	120712792	120712792	Nonsense_Mutation	G	T	p.E625X
LIHC	TCGA-DD-AAD1-01	GSE1	ENST00000469381.1,ENST00000412692.1	chr16	85696991:85697220:85699581:85699953:85701745:85702030,	85699582	85699953	85699912	85699912	Nonsense_Mutation	C	G	p.S1030X
LIHC	TCGA-MR-A8JO-01	MED13	ENST00000397786.2	chr17	60050087:60050249:60059558:60060475:60061531:60061728,	60059559	60060475	60059776	60059776	Nonsense_Mutation	G	T	p.C1196X
LIHC	TCGA-G3-A3CJ-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821054	97821054	Nonsense_Mutation	G	A	p.W426X
LIHC	TCGA-G3-A3CJ-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000395187.2,ENST00000427635.2,ENST00000412272.2	chr10	69773782:69773943:69785302:69785433:69792534:69792626,	69785303	69785433	69785412	69785412	Nonsense_Mutation	C	A	p.G267X
LIHC	TCGA-2Y-A9H5-01	AHCTF1	ENST00000470300.1	chr1	247006003:247006078:247007096:247007230:247012916:247013151,247004263:247004300:247007096:247007230:247012916:247013151,	247007097	247007230	247007207	247007207	Nonsense_Mutation	G	A	p.Q2148X
LIHC	TCGA-DD-AAE1-01	PTPRN	ENST00000295718.2,ENST00000446182.1,ENST00000440552.1,ENST00000412847.1,ENST00000451506.1,ENST00000606213.1,ENST00000409251.3,ENST00000442029.1,ENST00000423636.2	chr2	220168456:220168553:220172165:220172279:220172513:220172564,	220172166	220172279	220172166	220172166	Nonsense_Mutation	C	A	p.G94X
LIHC	TCGA-DD-AAE1-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396740	396740	Nonsense_Mutation	G	A	p.Q96X
LIHC	TCGA-DD-AAE1-01	MBP	ENST00000579129.1,ENST00000397860.3,ENST00000355994.2	chr18	74778267:74778341:74817166:74817242:74844535:74844725,	74817167	74817242	74817196	74817196	Nonsense_Mutation	G	A	p.R8X
LIHC	TCGA-CC-A9FS-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097796	27097796	Nonsense_Mutation	A	T	p.K1129X
LIHC	TCGA-CC-A9FS-01	ST8SIA6	ENST00000377602.4	chr10	17373406:17373551:17401512:17401599:17432529:17432619,	17401513	17401599	17401546	17401546	Nonsense_Mutation	C	T	p.W115X
LIHC	TCGA-CC-A9FS-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62943447:62943610:62946660:62946954:62949773:62949972,	62946661	62946954	62946910	62946910	Nonsense_Mutation	G	T	p.G1056X
LIHC	TCGA-CC-A9FS-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347107	347107	Nonsense_Mutation	C	T	p.W635X
LIHC	TCGA-CC-A9FS-01	TSC2	ENST00000353929.4,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2107105:2107179:2108747:2108874:2110670:2110814,	2108748	2108874	2108810	2108810	Nonsense_Mutation	G	A	p.W304X
LIHC	TCGA-ZS-A9CF-01	COL4A1	ENST00000375820.4	chr13	110804680:110804853:110807629:110807744:110813538:110813716,	110807630	110807744	110807652	110807652	Nonsense_Mutation	C	T	p.W1578X
LIHC	TCGA-DD-A39W-01	WDR45B	ENST00000392325.4,ENST00000571767.1,ENST00000571835.1	chr17	80575229:80575273:80576918:80577004:80579484:80579650,	80576919	80577004	80576976	80576976	Nonsense_Mutation	G	C	p.S216X
LIHC	TCGA-BC-A216-01	TP53BP2	ENST00000473135.1,ENST00000343537.7	chr1	223998165:223998215:224001941:224002055:224008921:224009069,	224001942	224002055	224002032	224002032	Nonsense_Mutation	G	A	p.R67X
LIHC	TCGA-DD-AACW-01	ZNF639	ENST00000491818.1,ENST00000484866.1,ENST00000494234.1,ENST00000326361.3,ENST00000483460.1,ENST00000481587.1,ENST00000496856.1,ENST00000466264.1	chr3	179046070:179046139:179047405:179047516:179050776:179050911,	179047406	179047516	179047483	179047483	Nonsense_Mutation	A	T	p.R46X
LIHC	TCGA-G3-A5SL-01	C7orf26	ENST00000359073.5	chr7	6629774:6630106:6631333:6631498:6634065:6634231,	6631334	6631498	6631388	6631388	Nonsense_Mutation	C	T	p.Q102X
LIHC	TCGA-MI-A75I-01	TM6SF1	ENST00000379386.4,ENST00000379384.5,ENST00000322019.9	chr15	83793423:83793528:83795506:83795599:83796109:83796229,	83795507	83795599	83795555	83795555	Nonsense_Mutation	C	T	p.Q253X
LIHC	TCGA-MI-A75I-01	DEDD2	ENST00000596251.1,ENST00000595337.1,ENST00000593804.1	chr19	42703944:42703981:42713851:42713992:42719284:42719404,	42713852	42713992	42713936	42713936	Nonsense_Mutation	T	A	p.R169X
LIHC	TCGA-CC-5264-01	SRM	ENST00000459997.1	chr1	11118856:11118949:11119281:11119437:11119833:11120077,	11119282	11119437	11119332	11119332	Nonsense_Mutation	G	A	p.Q80X
LIHC	TCGA-CC-5264-01	SRM	ENST00000376957.2	chr1	11118856:11118949:11119281:11119402:11119833:11120077,	11119282	11119402	11119332	11119332	Nonsense_Mutation	G	A	p.Q80X
LIHC	TCGA-CC-5264-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209788321:209788752:209789815:209789969:209790754:209790922,	209789816	209789969	209789918	209789918	Nonsense_Mutation	G	A	p.Q1094X
LIHC	TCGA-BD-A3ER-01	EFCAB5	ENST00000378738.3,ENST00000440741.3	chr17	28384693:28384908:28386562:28386719:28400100:28400144,	28386563	28386719	28386624	28386624	Nonsense_Mutation	G	A	p.W881X
LIHC	TCGA-G3-A3CG-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087065	117087065	Nonsense_Mutation	T	A	p.K78X
LIHC	TCGA-G3-A3CG-01	MCMBP	ENST00000360003.3,ENST00000466047.1,ENST00000369077.3	chr10	121591523:121591612:121595051:121595216:121596407:121596541,	121595052	121595216	121595143	121595143	Nonsense_Mutation	G	C	p.S541X
LIHC	TCGA-G3-A3CG-01	ZNF185	ENST00000370270.2,ENST00000318529.8,ENST00000535861.1,ENST00000324823.6,ENST00000449285.2,ENST00000370268.4,ENST00000539731.1,ENST00000436731.2,ENST00000426821.2,ENST00000318504.7	chrX	152106623:152106707:152113810:152114008:152128242:152128385,	152113811	152114008	152113989	152113989	Nonsense_Mutation	C	T	p.R495X
LIHC	TCGA-DD-AACT-01	COL16A1	ENST00000271069.6,ENST00000373668.3,ENST00000373672.3	chr1	32162820:32162901:32163506:32163773:32164083:32164207,	32163507	32163773	32163575	32163575	Nonsense_Mutation	G	A	p.R197X
LIHC	TCGA-DD-AACT-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672195	77672195	Nonsense_Mutation	T	A	p.R3032X
LIHC	TCGA-DD-AACT-01	SYCP2	ENST00000357552.3,ENST00000371001.2,ENST00000412613.1	chr20	58440861:58440920:58441347:58441447:58441549:58441644,	58441348	58441447	58441392	58441392	Nonsense_Mutation	C	A	p.E1426X
LIHC	TCGA-FV-A495-01	MYOF	ENST00000359263.4,ENST00000371489.1,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95159148:95159252:95161174:95161301:95161988:95162104,	95161175	95161301	95161196	95161196	Nonsense_Mutation	G	A	p.R366X
LIHC	TCGA-FV-A495-01	PKHD1L1	ENST00000378402.5,ENST00000526472.1	chr8	110535461:110535615:110539012:110539249:110542308:110542489,	110539013	110539249	110539189	110539189	Nonsense_Mutation	G	T	p.G4221X
LIHC	TCGA-DD-A73A-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532X
LIHC	TCGA-DD-A1EI-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2	chr6	109768275:109768432:109768559:109768643:109768883:109768925,	109768560	109768643	109768571	109768571	Nonsense_Mutation	G	A	p.Q687X
LIHC	TCGA-DD-A4NA-01	EML4	ENST00000401738.3,ENST00000318522.5	chr2	42483640:42483770:42488260:42488434:42490317:42490446,	42488261	42488434	42488346	42488346	Nonsense_Mutation	C	T	p.R142X
LIHC	TCGA-2Y-A9GY-01	TCN1	ENST00000257264.3	chr11	59622138:59622308:59623341:59623531:59626549:59626740,	59623342	59623531	59623355	59623355	Nonsense_Mutation	G	T	p.C308X
LIHC	TCGA-DD-AACG-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192X
LIHC	TCGA-DD-AACZ-01	ZBTB40	ENST00000374651.4,ENST00000375647.4,ENST00000404138.1	chr1	22835592:22835726:22837671:22837840:22838168:22838627,	22837672	22837840	22837792	22837792	Nonsense_Mutation	A	T	p.K652X
LIHC	TCGA-DD-AACZ-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631492	116631492	Nonsense_Mutation	A	T	p.L278X
LIHC	TCGA-5C-A9VG-01	ACHE	ENST00000442452.1	chr7	100488789:100488959:100489954:100490264:100490785:100491525,	100489955	100490264	100490028	100490028	Nonsense_Mutation	G	A	p.R494X
LIHC	TCGA-5C-A9VG-01	ACHE	ENST00000419336.2	chr7	100488789:100488959:100489954:100490175:100490785:100491525,	100489955	100490175	100490028	100490028	Nonsense_Mutation	G	A	p.R494X
LIHC	TCGA-5C-A9VG-01	ACHE	ENST00000412389.1,ENST00000241069.5,ENST00000411582.1,ENST00000428317.1,ENST00000302913.4	chr7	100488789:100488959:100489954:100490439:100490785:100491525,	100489955	100490439	100490028	100490028	Nonsense_Mutation	G	A	p.R494X
LIHC	TCGA-DD-A1EK-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1	chr3	64554043:64554211:64579933:64580110:64582505:64582667,	64579934	64580110	64579956	64579956	Nonsense_Mutation	C	T	p.W1445X
LIHC	TCGA-DD-AAC9-01	ARAP3	ENST00000512390.1,ENST00000508305.1,ENST00000239440.4	chr5	141033357:141034002:141034928:141034967:141035187:141035265,	141034929	141034967	141034964	141034964	Nonsense_Mutation	G	A	p.R1372X
LIHC	TCGA-DD-AAC9-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971101	21971101	Nonsense_Mutation	G	T	p.C100X
LIHC	TCGA-DD-AAC9-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971101	21971101	Nonsense_Mutation	G	T	p.C100X
LIHC	TCGA-DD-AAC9-01	ABCC8	ENST00000389817.3,ENST00000302539.4,ENST00000527905.1,ENST00000532728.1	chr11	17491647:17491769:17496432:17496574:17498175:17498354,	17496433	17496574	17496563	17496563	Nonsense_Mutation	G	A	p.Q54X
LIHC	TCGA-DD-AAD5-01	LAT	ENST00000564447.1,ENST00000360872.5,ENST00000395456.2,ENST00000454369.2,ENST00000395461.3,ENST00000568899.1,ENST00000566415.1	chr16	29001094:29001160:29001253:29001340:29001509:29001834,	29001254	29001340	29001280	29001280	Nonsense_Mutation	G	T	p.E253X
LIHC	TCGA-G3-AAV3-01	OSBPL1A	ENST00000319481.3,ENST00000357041.4	chr18	21819183:21819346:21860805:21860912:21883600:21883682,	21860806	21860912	21860862	21860862	Nonsense_Mutation	T	A	p.R409X
LIHC	TCGA-DD-AAE0-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128135074	128135074	Nonsense_Mutation	G	A	p.R238X
LIHC	TCGA-DD-AAE0-01	CS	ENST00000550734.1,ENST00000548849.1,ENST00000551253.1,ENST00000551936.1,ENST00000351328.3,ENST00000549221.1,ENST00000549143.1,ENST00000542324.2,ENST00000548567.1,ENST00000546621.1	chr12	56669779:56669927:56676203:56676392:56676643:56676691,56669947:56669979:56676203:56676392:56676643:56676691,	56676204	56676392	56676233	56676233	Nonsense_Mutation	G	A	p.Q187X
LIHC	TCGA-NI-A8LF-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368912.3,ENST00000368913.3	chr1	151110484:151110581:151111105:151111207:151111900:151111937,151110791:151110882:151111105:151111207:151111900:151111937,	151111106	151111207	151111134	151111134	Nonsense_Mutation	G	T	p.S143X
LIHC	TCGA-NI-A8LF-01	MAN2C1	ENST00000565683.1	chr15	75651399:75651532:75651668:75651779:75651960:75652116,	75651669	75651779	75651671	75651671	Nonsense_Mutation	C	A	p.E682X
LIHC	TCGA-NI-A8LF-01	MAN2C1	ENST00000563441.1,ENST00000569482.1,ENST00000563368.1,ENST00000563622.1,ENST00000267978.5	chr15	75651399:75651494:75651668:75651766:75651960:75652116,	75651669	75651766	75651671	75651671	Nonsense_Mutation	C	A	p.E682X
LIHC	TCGA-ZP-A9CY-01	KIAA1958	ENST00000536272.1,ENST00000374244.3	chr9	115249357:115249398:115336336:115337531:115380150:115380234,	115336337	115337531	115337345	115337345	Nonsense_Mutation	C	T	p.Q329X
LIHC	TCGA-ZP-A9CY-01	DPP8	ENST00000300141.6,ENST00000339244.5,ENST00000341861.5,ENST00000559233.1,ENST00000558559.1	chr15	65744381:65744440:65746600:65746753:65747991:65748029,65744381:65744440:65746600:65746753:65756098:65756183,65744381:65744440:65746600:65746753:65748562:65748703,	65746601	65746753	65746732	65746732	Nonsense_Mutation	G	A	p.Q730X
LIHC	TCGA-DD-AAD8-01	ENSA	ENST00000509582.1	chr1	150598194:150598284:150598954:150599002:150599942:150600068,150598194:150598284:150598954:150599002:150599787:150600068,	150598955	150599002	150598960	150598960	Nonsense_Mutation	C	A	p.E76X
LIHC	TCGA-FV-A23B-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101342	27101342	Nonsense_Mutation	G	T	p.E1542X
LIHC	TCGA-DD-AAEE-01	GPSM3	ENST00000375043.3	chr6	32159924:32160027:32160248:32160307:32160817:32160901,	32160249	32160307	32160269	32160269	Nonsense_Mutation	C	A	p.E8X
LIHC	TCGA-G3-AAV7-01	THAP8	ENST00000538849.1,ENST00000522483.2	chr19	36526049:36526494:36530224:36530620:36545036:36545166,	36530225	36530620	36530605	36530605	Nonsense_Mutation	G	A	p.R98X
LIHC	TCGA-G3-A25T-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439874	52439874	Nonsense_Mutation	G	A	p.Q280X
LIHC	TCGA-YA-A8S7-01	ETFDH	ENST00000307738.5,ENST00000506422.1,ENST00000511912.1	chr4	159624574:159624743:159627340:159627523:159627780:159628002,	159627341	159627523	159627390	159627390	Nonsense_Mutation	G	A	p.W445X
LIHC	TCGA-DD-A11A-01	RINT1	ENST00000257700.2,ENST00000497979.1	chr7	105192052:105192154:105195474:105195674:105204179:105204394,	105195475	105195674	105195558	105195558	Nonsense_Mutation	C	T	p.R519X
LIHC	TCGA-DD-A3A0-01	RFC4	ENST00000433496.1	chr3	186507688:186507853:186507930:186508044:186508114:186508195,186507688:186507853:186507930:186508044:186509513:186509639,	186507931	186508044	186507957	186507957	Nonsense_Mutation	T	A	p.K324X
LIHC	TCGA-DD-A3A0-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717725	89717725	Nonsense_Mutation	T	A	p.C250X
LIHC	TCGA-FV-A2QR-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179562594:179563002:179564762:179564953:179587733:179587817,	179564763	179564953	179564922	179564922	Nonsense_Mutation	C	G	p.S267X
LIHC	TCGA-FV-A2QR-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20434540:20434608:20438482:20438617:20441343:20441749,	20438483	20438617	20438493	20438493	Nonsense_Mutation	C	A	p.S386X
LIHC	TCGA-FV-A2QR-01	LRRC28	ENST00000559819.1,ENST00000447360.2,ENST00000301981.3,ENST00000558172.1,ENST00000558471.1,ENST00000561276.1,ENST00000559433.1,ENST00000558890.1	chr15	99828018:99828156:99892573:99892676:99901540:99901714,99874287:99874334:99892573:99892676:99901540:99901714,	99892574	99892676	99892588	99892588	Nonsense_Mutation	C	T	p.R203X
LIHC	TCGA-FV-A2QR-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56247584	56247584	Nonsense_Mutation	C	A	p.E142X
LIHC	TCGA-DD-AA3A-01	P4HA1	ENST00000394890.2,ENST00000373008.2,ENST00000307116.2,ENST00000440381.1,ENST00000263556.3,ENST00000412021.2	chr10	74806682:74806859:74810810:74811007:74813108:74813348,	74810811	74811007	74810844	74810844	Nonsense_Mutation	G	T	p.Y289X
LIHC	TCGA-DD-AA3A-01	CPAMD8	ENST00000443236.1	chr19	17091306:17091496:17100452:17100581:17104225:17104396,	17100453	17100581	17100489	17100489	Nonsense_Mutation	G	T	p.C500X
LIHC	TCGA-ED-A8O5-01	PPARGC1A	ENST00000264867.2,ENST00000506055.1,ENST00000509702.1	chr4	23803352:23803504:23803846:23803968:23814369:23814490,	23803847	23803968	23803848	23803848	Nonsense_Mutation	C	A	p.G714X
LIHC	TCGA-BC-A112-01	SCAP	ENST00000320017.6,ENST00000545718.1	chr3	47470050:47470160:47476497:47476627:47484361:47484581,47463931:47464026:47476497:47476627:47484361:47484581,47465422:47465535:47476497:47476627:47484361:47484581,	47476498	47476627	47476584	47476584	Nonsense_Mutation	C	A	p.E56X
LIHC	TCGA-BC-A112-01	SCAP	ENST00000420588.1	chr3	47470050:47470160:47476414:47476627:47484361:47484581,	47476415	47476627	47476584	47476584	Nonsense_Mutation	C	A	p.E56X
LIHC	TCGA-BC-A112-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84774391:84774526:84774615:84774736:84775411:84775541,	84774616	84774736	84774640	84774640	Nonsense_Mutation	C	T	p.R364X
LIHC	TCGA-CC-5259-01	TINAG	ENST00000259782.4,ENST00000486436.1,ENST00000370864.3,ENST00000370869.3	chr6	54185376:54185440:54186094:54186184:54191599:54191638,	54186095	54186184	54186162	54186162	Nonsense_Mutation	C	T	p.Q163X
LIHC	TCGA-CC-5259-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210908	37210908	Nonsense_Mutation	A	T	p.K397X
LIHC	TCGA-G3-AAV0-01	ITGA2	ENST00000503810.2,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52374601:52374704:52376340:52376451:52377421:52377526,	52376341	52376451	52376395	52376395	Nonsense_Mutation	C	T	p.Q995X
LIHC	TCGA-BC-4073-01	JKAMP	ENST00000555491.1	chr14	59961735:59961805:59965444:59965626:59967908:59967965,	59965445	59965626	59965466	59965466	Nonsense_Mutation	T	G	p.Y160X
LIHC	TCGA-BC-4073-01	PXMP4	ENST00000217398.3	chr20	32295294:32295775:32298360:32298579:32302479:32302542,	32298361	32298579	32298387	32298387	Nonsense_Mutation	C	A	p.G117X
LIHC	TCGA-BC-4073-01	PXMP4	ENST00000409299.3	chr20	32295294:32295775:32298360:32298559:32302479:32302542,	32298361	32298559	32298387	32298387	Nonsense_Mutation	C	A	p.G117X
LIHC	TCGA-ZP-A9D2-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641039	96641039	Nonsense_Mutation	G	T	p.E177X
LIHC	TCGA-BC-A110-01	GUSB	ENST00000421103.1	chr7	65439512:65439691:65439905:65440058:65441001:65441189,65439512:65439691:65439905:65440058:65444820:65444898,	65439906	65440058	65440043	65440043	Nonsense_Mutation	G	A	p.Q310X
LIHC	TCGA-KR-A7K0-01	CES2	ENST00000564420.1,ENST00000417689.1	chr16	66976007:66976152:66976550:66976640:66977201:66977274,	66976551	66976640	66976600	66976600	Nonsense_Mutation	G	A	p.W508X
LIHC	TCGA-KR-A7K0-01	CES2	ENST00000317091.4,ENST00000568470.1	chr16	66976007:66976152:66976550:66976688:66977201:66977274,	66976551	66976688	66976600	66976600	Nonsense_Mutation	G	A	p.W508X
LIHC	TCGA-DD-A4NI-01	NPL	ENST00000367552.2,ENST00000367555.1	chr1	182791249:182791334:182794915:182794955:182798737:182798814,182787772:182787824:182794915:182794955:182798737:182798814,	182794916	182794955	182794948	182794948	Nonsense_Mutation	C	G	p.S229X
LIHC	TCGA-DD-AADB-01	CACNA1G	ENST00000354983.4,ENST00000511768.1,ENST00000429973.2,ENST00000512389.1,ENST00000505165.1,ENST00000502264.1,ENST00000510115.1,ENST00000506520.1,ENST00000503485.1,ENST00000503436.1,ENST00000503607.1,ENST00000507336.1,ENST00000515411.1,ENST00000513964.1,ENST00000511765.1,ENST00000358244.5,ENST00000515165.1,ENST00000504076.1,ENST00000352832.5,ENST00000506406.1,ENST00000507609.1,ENST00000514079.1,ENST00000507896.1,ENST00000359106.5,ENST00000515765.1,ENST00000360761.4,ENST00000513689.2,ENST00000442258.2,ENST00000514181.1,ENST00000507510.2,ENST00000514717.1,ENST00000510366.1	chr17	48681515:48681642:48683258:48683384:48684260:48684350,	48683259	48683384	48683348	48683348	Nonsense_Mutation	G	A	p.W1462X
LIHC	TCGA-BC-A10Z-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000424310.2	chr5	158600990:158601166:158603639:158603875:158608967:158609059,	158603640	158603875	158603765	158603765	Nonsense_Mutation	C	A	p.E196X
LIHC	TCGA-DD-A119-01	STRN	ENST00000379213.2,ENST00000263918.4	chr2	37088274:37088396:37094956:37095004:37096696:37096872,	37094957	37095004	37094974	37094974	Nonsense_Mutation	A	T	p.Y510X
LIHC	TCGA-DD-A119-01	IQCB1	ENST00000460108.1,ENST00000349820.6,ENST00000393650.3,ENST00000310864.6	chr3	121526190:121526290:121527762:121527856:121544897:121545027,	121527763	121527856	121527778	121527778	Nonsense_Mutation	C	A	p.E158X
LIHC	TCGA-DD-A119-01	ARHGAP10	ENST00000506054.1,ENST00000336498.3	chr4	148800382:148800489:148802988:148803083:148827788:148827870,	148802989	148803083	148802995	148802995	Nonsense_Mutation	G	T	p.G316X
LIHC	TCGA-DD-A73B-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120242	12120242	Nonsense_Mutation	C	T	p.Q72X
LIHC	TCGA-DD-AAED-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659193	86659193	Nonsense_Mutation	T	G	p.Y494X
LIHC	TCGA-ZP-A9D1-01	PADI1	ENST00000375471.4	chr1	17552527:17552653:17555119:17555292:17555442:17555546,	17555120	17555292	17555182	17555182	Nonsense_Mutation	G	T	p.E239X
LIHC	TCGA-GJ-A9DB-01	TMEFF2	ENST00000392314.1,ENST00000272771.5	chr2	192818404:192818563:192820980:192821104:192862987:192863047,	192820981	192821104	192820997	192820997	Nonsense_Mutation	G	A	p.Q285X
LIHC	TCGA-GJ-A9DB-01	SLC39A8	ENST00000356736.4	chr4	103236824:103236987:103265600:103266072:103266501:103266594,	103265601	103266072	103265762	103265762	Nonsense_Mutation	C	A	p.G20X
LIHC	TCGA-DD-A4NS-01	ZNF430	ENST00000599548.1,ENST00000261560.5,ENST00000594110.1	chr19	21205594:21205687:21216261:21216388:21216891:21216990,	21216262	21216388	21216304	21216304	Nonsense_Mutation	G	T	p.E47X
LIHC	TCGA-DD-AACL-01	OPA1	ENST00000434811.1,ENST00000495476.1,ENST00000497189.1,ENST00000392438.3,ENST00000361150.2,ENST00000361715.2,ENST00000361908.3,ENST00000361510.2,ENST00000361828.2	chr3	193349400:193349454:193353206:193353311:193354983:193355001,	193353207	193353311	193353249	193353249	Nonsense_Mutation	A	T	p.K296X
LIHC	TCGA-DD-AACL-01	NAALAD2	ENST00000534061.1,ENST00000321955.4	chr11	89909139:89909230:89911020:89911285:89914787:89914869,	89911021	89911285	89911262	89911262	Nonsense_Mutation	T	A	p.L612X
LIHC	TCGA-DD-AACL-01	UBE3B	ENST00000538070.1,ENST00000434735.2,ENST00000605142.1,ENST00000449510.2,ENST00000342494.3,ENST00000535089.1	chr12	109967734:109967877:109968351:109968463:109971270:109971363,	109968352	109968463	109968392	109968392	Nonsense_Mutation	A	T	p.R951X
LIHC	TCGA-BC-A3KF-01	SPEF2	ENST00000505847.1,ENST00000509059.1,ENST00000505088.1,ENST00000510777.1,ENST00000440995.2,ENST00000356031.3	chr5	35618099:35618157:35628561:35628664:35641532:35641785,	35628562	35628664	35628606	35628606	Nonsense_Mutation	G	T	p.G35X
LIHC	TCGA-BC-A3KF-01	TBPL1	ENST00000237264.4	chr6	134305586:134305617:134305714:134305809:134308098:134308637,	134305715	134305809	134305776	134305776	Nonsense_Mutation	C	T	p.Q150X
LIHC	TCGA-CC-A7IH-01	MUC6	ENST00000421673.2	chr11	1030946:1031056:1031168:1031259:1031606:1031733,	1031169	1031259	1031239	1031239	Nonsense_Mutation	G	C	p.Y168X
LIHC	TCGA-CC-A7IH-01	HECTD1	ENST00000553700.1,ENST00000399332.1,ENST00000556224.1	chr14	31638559:31638674:31641066:31641165:31641251:31641328,	31641067	31641165	31641123	31641123	Nonsense_Mutation	G	A	p.Q426X
LIHC	TCGA-CC-A7IH-01	FURIN	ENST00000558794.1	chr15	91422900:91423004:91423096:91423345:91423920:91423986,	91423097	91423345	91423153	91423153	Nonsense_Mutation	C	T	p.Q439X
LIHC	TCGA-CC-A7IH-01	FURIN	ENST00000268171.3	chr15	91422900:91423004:91423096:91423214:91423323:91423503,	91423097	91423214	91423153	91423153	Nonsense_Mutation	C	T	p.Q439X
LIHC	TCGA-CC-A7IH-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33320362:33320399:33324493:33324562:33328166:33328321,	33324494	33324562	33324500	33324500	Nonsense_Mutation	T	A	p.R1986X
LIHC	TCGA-CC-A7IH-01	RBL1	ENST00000373664.3	chr20	35624751:35627332:35632104:35632269:35635813:35635962,	35632105	35632269	35632146	35632146	Nonsense_Mutation	T	A	p.R999X
LIHC	TCGA-WX-AA47-01	COL24A1	ENST00000436319.1,ENST00000426639.1,ENST00000370571.2	chr1	86195764:86196375:86200431:86200647:86203078:86203188,	86200432	86200647	86200503	86200503	Nonsense_Mutation	T	A	p.K1643X
LIHC	TCGA-DD-A3A2-01	HNF1A	ENST00000400024.2,ENST00000543427.1,ENST00000560968.1,ENST00000541924.1,ENST00000402929.1,ENST00000544413.1,ENST00000541395.1	chr12	121416871:121416897:121426635:121426835:121431322:121431509,	121426636	121426835	121426820	121426820	Nonsense_Mutation	C	T	p.R171X
LIHC	TCGA-DD-AADQ-01	PRPF4B	ENST00000494674.1	chr6	4058961:4059048:4060646:4060920:4061248:4061381,	4060647	4060920	4060749	4060749	Nonsense_Mutation	C	T	p.Q975X
LIHC	TCGA-DD-AADQ-01	PRPF4B	ENST00000481109.1	chr6	4058961:4059048:4060646:4060878:4061248:4061381,	4060647	4060878	4060749	4060749	Nonsense_Mutation	C	T	p.Q975X
LIHC	TCGA-DD-AADQ-01	SYCP2	ENST00000425931.1	chr20	58495413:58495542:58496364:58496505:58497444:58497473,	58496365	58496505	58496502	58496502	Nonsense_Mutation	C	A	p.E11X
LIHC	TCGA-DD-AADQ-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58495413:58495542:58496364:58496508:58497444:58497473,	58496365	58496508	58496502	58496502	Nonsense_Mutation	C	A	p.E11X
LIHC	TCGA-CC-A8HV-01	TBC1D19	ENST00000512840.1,ENST00000264866.4,ENST00000505206.1,ENST00000502873.1,ENST00000504442.1,ENST00000511789.1	chr4	26641762:26641809:26661218:26661329:26667954:26668027,	26661219	26661329	26661312	26661312	Nonsense_Mutation	A	T	p.K192X
LIHC	TCGA-CC-A8HV-01	ANO1	ENST00000398543.2,ENST00000355303.5,ENST00000316296.5,ENST00000538023.1,ENST00000530676.1	chr11	69933857:69934190:69949171:69949270:69950104:69950256,	69949172	69949270	69949238	69949238	Nonsense_Mutation	G	T	p.E170X
LIHC	TCGA-CC-A8HV-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000561069.1,ENST00000411764.1	chr15	29400472:29400592:29406078:29406219:29409264:29409920,	29406079	29406219	29406112	29406112	Nonsense_Mutation	C	T	p.R691X
LIHC	TCGA-DD-AAE6-01	SLC11A1	ENST00000473367.1	chr2	219247682:219247825:219249041:219249088:219249869:219249989,	219249042	219249088	219249062	219249062	Nonsense_Mutation	C	T	p.Q83X
LIHC	TCGA-DD-AAE6-01	SLC11A1	ENST00000486451.1	chr2	219247682:219247825:219248965:219249088:219249869:219249989,219247031:219247098:219248965:219249088:219249869:219249989,	219248966	219249088	219249062	219249062	Nonsense_Mutation	C	T	p.Q83X
LIHC	TCGA-DD-AAE6-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000275248.4,ENST00000414678.2	chr6	157150360:157150555:157222509:157222659:157256599:157256710,	157222510	157222659	157222615	157222615	Nonsense_Mutation	C	T	p.Q628X
LIHC	TCGA-DD-AAE6-01	NXF1	ENST00000531872.1	chr11	62563620:62563653:62563758:62563814:62563931:62564035,	62563759	62563814	62563804	62563804	Nonsense_Mutation	C	A	p.E434X
LIHC	TCGA-DD-AAE6-01	NXF1	ENST00000294172.2,ENST00000530875.1,ENST00000533048.1,ENST00000531709.2,ENST00000533440.1,ENST00000532297.1	chr11	62563620:62563653:62563758:62563817:62563931:62564035,	62563759	62563817	62563804	62563804	Nonsense_Mutation	C	A	p.E434X
LIHC	TCGA-DD-AAE6-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396164	396164	Nonsense_Mutation	C	A	p.E288X
LIHC	TCGA-DD-AADL-01	SAMD12	ENST00000524796.1,ENST00000409003.4	chr8	119209785:119209971:119391798:119391939:119452070:119452200,	119391799	119391939	119391802	119391802	Nonsense_Mutation	G	A	p.Q154X
LIHC	TCGA-CC-A5UD-01	SULT1C4	ENST00000409309.3	chr2	108998217:108998343:108999871:108999966:109002647:109002828,	108999872	108999966	108999919	108999919	Nonsense_Mutation	A	T	p.K190X
LIHC	TCGA-CC-A5UD-01	TMEM245	ENST00000374586.3,ENST00000491854.1	chr9	111849452:111849622:111853201:111853435:111855754:111855865,	111853202	111853435	111853343	111853343	Nonsense_Mutation	T	A	p.R337X
LIHC	TCGA-CC-A5UD-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877186	16877186	Nonsense_Mutation	T	A	p.R3397X
LIHC	TCGA-CC-A5UD-01	AKAP17A	ENST00000313871.3	chrX	1714276:1714425:1718084:1718325:1719551:1721395,	1718085	1718325	1718233	1718233	Nonsense_Mutation	G	T	p.E354X
LIHC	TCGA-ED-A4XI-01	IGSF9B	ENST00000321016.8,ENST00000527648.2,ENST00000533871.2	chr11	133796810:133796986:133799565:133799677:133800878:133801029,	133799566	133799677	133799610	133799610	Nonsense_Mutation	C	T	p.W529X
LIHC	TCGA-ED-A4XI-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563379	32563379	Nonsense_Mutation	T	A	p.Y1168X
LIHC	TCGA-DD-AADE-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715559	68715559	Nonsense_Mutation	C	A	p.S116X
LIHC	TCGA-DD-AADE-01	ATP10B	ENST00000520108.1,ENST00000327245.5	chr5	160047353:160047957:160049400:160049592:160059135:160059374,	160049401	160049592	160049550	160049550	Nonsense_Mutation	G	A	p.R555X
LIHC	TCGA-DD-AADE-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141763298:141763386:141764183:141764322:141765134:141765268,	141764184	141764322	141764321	141764321	Nonsense_Mutation	G	T	p.E1495X
LIHC	TCGA-WX-AA46-01	COL4A2	ENST00000360467.5	chr13	111121563:111121671:111125275:111125497:111130349:111130394,	111125276	111125497	111125290	111125290	Nonsense_Mutation	C	T	p.R740X
LIHC	TCGA-WX-AA46-01	PSMC6	ENST00000555887.1,ENST00000554956.1,ENST00000556813.1,ENST00000554044.1,ENST00000554952.1,ENST00000606149.1,ENST00000557240.1	chr14	53173939:53174022:53175026:53175106:53175200:53175240,	53175027	53175106	53175062	53175062	Nonsense_Mutation	G	T	p.E55X
LIHC	TCGA-DD-AACE-01	COL4A3	ENST00000396578.3	chr2	228137664:228137833:228141100:228141193:228142164:228142269,	228141101	228141193	228141109	228141109	Nonsense_Mutation	G	T	p.G646X
LIHC	TCGA-BC-A5W4-01	PTK2B	ENST00000521164.1,ENST00000420218.2,ENST00000544172.1,ENST00000346049.5,ENST00000338238.4,ENST00000397501.1	chr8	27183080:27183198:27255064:27255305:27277411:27277518,	27255065	27255305	27255270	27255270	Nonsense_Mutation	A	T	p.K57X
LIHC	TCGA-DD-A73D-01	PDE4DIP	ENST00000313382.9,ENST00000479369.2	chr1	144866591:144866723:144867920:144868172:144871695:144871881,144866591:144866723:144867920:144868172:144873876:144874029,	144867921	144868172	144868027	144868027	Nonsense_Mutation	G	T	p.Y1804X
LIHC	TCGA-5R-AAAM-01	C5orf51	ENST00000381647.2	chr5	41911149:41911281:41912170:41912285:41917117:41921738,	41912171	41912285	41912232	41912232	Nonsense_Mutation	T	G	p.L183X
LIHC	TCGA-5R-AAAM-01	PSG9	ENST00000244293.7,ENST00000593948.1	chr19	43763008:43763287:43766011:43766290:43771935:43772301,43762353:43762608:43766011:43766290:43771935:43772301,	43766012	43766290	43766112	43766112	Nonsense_Mutation	A	T	p.Y203X
LIHC	TCGA-RC-A6M4-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670102	186670102	Nonsense_Mutation	G	T	p.E5446X
LIHC	TCGA-RC-A6M4-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005471	150005471	Nonsense_Mutation	T	A	p.R252X
LIHC	TCGA-2Y-A9GT-01	DOCK2	ENST00000256935.8,ENST00000520908.1,ENST00000523351.1,ENST00000520450.1,ENST00000540750.1,ENST00000524185.1	chr5	169494513:169494690:169496140:169496224:169502950:169503088,	169496141	169496224	169496161	169496161	Nonsense_Mutation	T	A	p.Y1555X
LIHC	TCGA-ES-A2HS-01	WDFY1	ENST00000429915.1,ENST00000493001.1,ENST00000233055.4	chr2	224759006:224759056:224760220:224760347:224763674:224763787,	224760221	224760347	224760297	224760297	Nonsense_Mutation	C	A	p.G217X
LIHC	TCGA-ES-A2HS-01	RAI14	ENST00000514036.1,ENST00000514527.1,ENST00000512625.1,ENST00000265109.3,ENST00000513974.1,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000503673.1,ENST00000507276.1,ENST00000514873.1,ENST00000428746.2,ENST00000502736.1,ENST00000508315.1,ENST00000512305.1,ENST00000397449.1,ENST00000504052.1	chr5	34757572:34757703:34796043:34796132:34803816:34803873,	34796044	34796132	34796132	34796132	Nonsense_Mutation	G	T	p.G89X
LIHC	TCGA-ES-A2HS-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000492616.1,ENST00000341723.4	chr7	92821566:92821676:92825140:92825214:92826553:92826591,	92825141	92825214	92825188	92825188	Nonsense_Mutation	C	A	p.G410X
LIHC	TCGA-ES-A2HS-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971400	52971400	Nonsense_Mutation	T	A	p.K330X
LIHC	TCGA-ES-A2HS-01	RFWD3	ENST00000571750.1	chr16	74685817:74686020:74694829:74695349:74698521:74698643,	74694830	74695349	74694849	74694849	Nonsense_Mutation	G	A	p.Q167X
LIHC	TCGA-ES-A2HS-01	MON1B	ENST00000439557.2	chr16	77225096:77225155:77225372:77225530:77228231:77228686,	77225373	77225530	77225506	77225506	Nonsense_Mutation	G	T	p.E42X
LIHC	TCGA-ES-A2HS-01	JPH3	ENST00000537256.1,ENST00000284262.2,ENST00000563609.1	chr16	87717747:87717872:87723251:87724132:87730185:87730408,	87723252	87724132	87723326	87723326	Nonsense_Mutation	C	T	p.Q454X
LIHC	TCGA-ES-A2HS-01	PMEPA1	ENST00000347215.4,ENST00000395814.1,ENST00000265626.4,ENST00000341744.3,ENST00000395816.3,ENST00000395819.3,ENST00000414037.1	chr20	56227462:56227654:56228088:56228142:56234598:56234753,	56228089	56228142	56228121	56228121	Nonsense_Mutation	C	A	p.E96X
LIHC	TCGA-ZS-A9CE-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29185178:29185341:29187450:29187630:29192721:29192818,	29187451	29187630	29187555	29187555	Nonsense_Mutation	G	T	p.E1021X
LIHC	TCGA-ZS-A9CE-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41012200:41012334:41022042:41022130:41025124:41025467,	41022043	41022130	41022048	41022048	Nonsense_Mutation	G	T	p.E635X
LIHC	TCGA-DD-A4NJ-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220499992:220500218:220500394:220500613:220501023:220501172,	220500395	220500613	220500541	220500541	Nonsense_Mutation	C	T	p.Q734X
LIHC	TCGA-DD-A4NJ-01	KCNMA1	ENST00000406533.3,ENST00000286628.8,ENST00000457953.1,ENST00000372437.1,ENST00000404771.3	chr10	78729731:78729825:78761164:78761338:78771724:78771801,	78761165	78761338	78761222	78761222	Nonsense_Mutation	T	A	p.R737X
LIHC	TCGA-LG-A6GG-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99365249:99365595:99374352:99374936:99375580:99375698,	99374353	99374936	99374696	99374696	Nonsense_Mutation	C	A	p.E57X
LIHC	TCGA-DD-AAW1-01	MCM9	ENST00000316316.6,ENST00000458674.2	chr6	119137343:119137457:119147309:119147455:119147944:119148027,	119147310	119147455	119147392	119147392	Nonsense_Mutation	G	A	p.Q627X
LIHC	TCGA-DD-AAW1-01	STAP2	ENST00000597593.1,ENST00000594605.1,ENST00000599736.1,ENST00000602007.1,ENST00000600324.1	chr19	4325212:4325305:4325392:4325542:4326938:4326949,	4325393	4325542	4325516	4325516	Nonsense_Mutation	T	A	p.K286X
LIHC	TCGA-BC-A8YO-01	PCDH15	ENST00000373955.1,ENST00000320301.6,ENST00000395446.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000373957.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55839090:55839184:55849743:55849823:55892634:55892767,	55849744	55849823	55849778	55849778	Nonsense_Mutation	C	A	p.G660X
LIHC	TCGA-DD-A116-01	PPP1CC	ENST00000546933.1,ENST00000551676.1,ENST00000335007.5,ENST00000550991.1,ENST00000340766.5	chr12	111160428:111160500:111162464:111162569:111168333:111168564,	111162465	111162569	111162541	111162541	Nonsense_Mutation	C	T	p.W149X
LIHC	TCGA-MI-A75G-01	SFT2D2	ENST00000271375.4,ENST00000471981.1	chr1	168201071:168201157:168204338:168204420:168205826:168205862,	168204339	168204420	168204373	168204373	Nonsense_Mutation	A	T	p.K91X
LIHC	TCGA-MI-A75G-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53289511:53289691:53296898:53297009:53301205:53301402,	53296899	53297009	53296958	53296958	Nonsense_Mutation	G	A	p.W1423X
LIHC	TCGA-DD-AACQ-01	ZBTB48	ENST00000435905.1	chr1	6640147:6640196:6640600:6641359:6642117:6642305,6640076:6640130:6640600:6641359:6642117:6642305,	6640601	6641359	6641168	6641168	Nonsense_Mutation	A	T	p.R167X
LIHC	TCGA-DD-AACQ-01	CTSS	ENST00000448301.2,ENST00000368985.3	chr1	150720271:150720355:150722481:150722647:150724256:150724310,	150722482	150722647	150722488	150722488	Nonsense_Mutation	T	A	p.R263X
LIHC	TCGA-DD-AACQ-01	GLB1L	ENST00000356283.3,ENST00000447002.1,ENST00000409640.1	chr2	220104282:220104404:220104496:220104555:220104912:220104956,220104282:220104404:220104496:220104555:220107235:220107296,	220104497	220104555	220104515	220104515	Nonsense_Mutation	A	T	p.Y254X
LIHC	TCGA-DD-AACQ-01	ITPR1	ENST00000456211.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000544951.1,ENST00000467056.1,ENST00000354582.6	chr3	4536114:4536190:4558159:4558267:4562707:4562778,	4558160	4558267	4558209	4558209	Nonsense_Mutation	G	T	p.G12X
LIHC	TCGA-DD-AACQ-01	MYO10	ENST00000513882.1,ENST00000513610.1	chr5	16769182:16769312:16779653:16779757:16780632:16780717,	16779654	16779757	16779718	16779718	Nonsense_Mutation	A	T	p.L289X
LIHC	TCGA-DD-AACQ-01	EEA1	ENST00000322349.8	chr12	93164412:93169909:93170619:93170718:93171318:93171439,	93170620	93170718	93170694	93170694	Nonsense_Mutation	T	A	p.R1347X
LIHC	TCGA-DD-AACQ-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610421	10610421	Nonsense_Mutation	T	A	p.K97X
LIHC	TCGA-DD-AACQ-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384217	21384217	Nonsense_Mutation	A	T	p.L469X
LIHC	TCGA-2V-A95S-01	UBQLN4	ENST00000472638.1	chr1	156020900:156021118:156021496:156021648:156023384:156023441,	156021497	156021648	156021615	156021615	Nonsense_Mutation	G	A	p.Q48X
LIHC	TCGA-2V-A95S-01	CTNNAL1	ENST00000374595.4,ENST00000325551.4	chr9	111727657:111727808:111739241:111739328:111741560:111741761,111734954:111735113:111739241:111739328:111741560:111741761,	111739242	111739328	111739250	111739250	Nonsense_Mutation	T	A	p.K394X
LIHC	TCGA-ED-A7XP-01	SEC24B	ENST00000265175.5,ENST00000399100.2	chr4	110354970:110355158:110384056:110384800:110394159:110394342,	110384057	110384800	110384263	110384263	Nonsense_Mutation	C	T	p.Q114X
LIHC	TCGA-ED-A7XP-01	C9orf135	ENST00000480564.1,ENST00000527647.1	chr9	72435875:72435947:72459432:72459541:72471470:72471589,	72459433	72459541	72459518	72459518	Nonsense_Mutation	C	T	p.R80X
LIHC	TCGA-DD-A118-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670985	151670985	Nonsense_Mutation	A	T	p.K487X
LIHC	TCGA-DD-AAVZ-01	EIF5	ENST00000216554.3,ENST00000558506.1,ENST00000392715.2	chr14	103805508:103805670:103805975:103806140:103806763:103806898,	103805976	103806140	103806063	103806063	Nonsense_Mutation	A	T	p.K332X
LIHC	TCGA-CC-A7IJ-01	IQCB1	ENST00000310864.6	chr3	121508919:121509062:121514303:121514413:121515964:121516074,	121514304	121514413	121514404	121514404	Nonsense_Mutation	G	A	p.Q296X
LIHC	TCGA-DD-AAC8-01	GRIA1	ENST00000448073.4,ENST00000340592.5,ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153078426:153078633:153085256:153085627:153143993:153144192,	153085257	153085627	153085377	153085377	Nonsense_Mutation	A	T	p.K535X
LIHC	TCGA-DD-AAC8-01	PDE9A	ENST00000335512.4,ENST00000398227.3,ENST00000490803.1,ENST00000467403.1,ENST00000335440.6,ENST00000470987.1,ENST00000398229.3,ENST00000539837.1,ENST00000398225.3,ENST00000460989.1,ENST00000468805.1,ENST00000398224.3,ENST00000380328.2,ENST00000398234.3,ENST00000349112.3,ENST00000398232.3,ENST00000495343.1,ENST00000495521.1,ENST00000328862.6,ENST00000462571.1,ENST00000489319.1,ENST00000398236.3,ENST00000291539.6,ENST00000497805.1	chr21	44190812:44190908:44192548:44192630:44195389:44195616,	44192549	44192630	44192597	44192597	Nonsense_Mutation	A	T	p.R579X
LIHC	TCGA-DD-A113-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881512	48881512	Nonsense_Mutation	G	A	p.W78X
LIHC	TCGA-DD-A113-01	FASN	ENST00000306749.2	chr17	80046844:80047048:80047125:80047260:80047507:80047602,	80047126	80047260	80047248	80047248	Nonsense_Mutation	C	A	p.E660X
LIHC	TCGA-DD-A113-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467323	58467323	Nonsense_Mutation	G	A	p.Q696X
LIHC	TCGA-ED-A5KG-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367251.3,ENST00000367255.5,ENST00000367256.5,ENST00000367257.4,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152534746:152534894:152536040:152536195:152539391:152539520,	152536041	152536195	152536122	152536122	Nonsense_Mutation	A	T	p.L7422X
LIHC	TCGA-ED-A5KG-01	TMOD1	ENST00000395211.2,ENST00000259365.4	chr9	100315562:100315682:100325013:100325103:100326319:100326450,	100325014	100325103	100325046	100325046	Nonsense_Mutation	C	T	p.Q144X
LIHC	TCGA-DD-A3A5-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32260229:32260478:32369180:32369393:32446927:32447080,	32369181	32369393	32369238	32369238	Nonsense_Mutation	G	T	p.E91X
LIHC	TCGA-DD-AADF-01	FBXL17	ENST00000359660.5,ENST00000542267.1,ENST00000496714.1	chr5	107216737:107216880:107356625:107356702:107521817:107521948,	107356626	107356702	107356642	107356642	Nonsense_Mutation	A	T	p.C602X
LIHC	TCGA-DD-AADF-01	ZSCAN12	ENST00000396827.3,ENST00000361028.1	chr6	28349967:28350386:28358372:28359519:28360678:28360823,	28358373	28359519	28359478	28359478	Nonsense_Mutation	G	A	p.Q197X
LIHC	TCGA-DD-AADF-01	TTC3	ENST00000428693.1	chr21	38563634:38563725:38567975:38568337:38569870:38569997,	38567976	38568337	38567997	38567997	Nonsense_Mutation	G	T	p.E1747X
LIHC	TCGA-CC-A7IE-01	FAM98A	ENST00000441530.2,ENST00000475122.1,ENST00000238823.8	chr2	33809955:33810511:33810596:33810764:33811628:33811745,	33810597	33810764	33810623	33810623	Nonsense_Mutation	C	A	p.E288X
LIHC	TCGA-CC-A7IE-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61297476:61297635:61298740:61298927:61300592:61300686,	61298741	61298927	61298747	61298747	Nonsense_Mutation	A	T	p.K53X
LIHC	TCGA-CC-A7IE-01	ZEB2	ENST00000303660.4,ENST00000409487.3,ENST00000392861.2,ENST00000558170.2,ENST00000440875.1,ENST00000427902.1	chr2	145162435:145162591:145182362:145182434:145187335:145187593,	145182363	145182434	145182399	145182399	Nonsense_Mutation	C	A	p.E123X
LIHC	TCGA-DD-A1EL-01	LRIG2	ENST00000466161.1,ENST00000361127.5,ENST00000492207.1	chr1	113657048:113657498:113658908:113659058:113661854:113662145,	113658909	113659058	113658968	113658968	Nonsense_Mutation	G	T	p.E864X
LIHC	TCGA-CC-A7IK-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951205	235951205	Nonsense_Mutation	G	T	p.E598X
LIHC	TCGA-CC-A7IK-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48689309:48689481:48689869:48689986:48690434:48690548,	48689870	48689986	48689876	48689876	Nonsense_Mutation	G	T	p.C1915X
LIHC	TCGA-CC-A7IK-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023956	64023956	Nonsense_Mutation	T	A	p.K86X
LIHC	TCGA-CC-A7IK-01	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3	chr6	28876584:28876617:28876749:28876865:28879472:28879495,	28876750	28876865	28876789	28876789	Nonsense_Mutation	T	A	p.K283X
LIHC	TCGA-CC-A7IK-01	NIPSNAP3B	ENST00000374762.3	chr9	107531143:107531302:107533129:107533279:107535102:107535189,	107533130	107533279	107533137	107533137	Nonsense_Mutation	T	A	p.Y146X
LIHC	TCGA-CC-A7IK-01	AP2B1	ENST00000592191.1,ENST00000262325.7,ENST00000312678.8,ENST00000591610.1,ENST00000590538.1,ENST00000592545.1,ENST00000538556.1	chr17	33914340:33914447:33921026:33921086:33925248:33925354,	33921027	33921086	33921086	33921086	Nonsense_Mutation	G	T	p.G13X
LIHC	TCGA-DD-AADO-01	MKLN1	ENST00000352689.6,ENST00000494785.1,ENST00000458153.1,ENST00000421797.2	chr7	131099403:131099469:131113791:131113904:131122543:131122756,	131113792	131113904	131113817	131113817	Nonsense_Mutation	G	A	p.W291X
LIHC	TCGA-DD-AADO-01	CYP17A1	ENST00000489268.1	chr10	104594541:104594771:104595010:104595350:104596821:104597171,	104595011	104595350	104595084	104595084	Nonsense_Mutation	C	T	p.W121X
LIHC	TCGA-DD-AADO-01	NUMB	ENST00000555238.1,ENST00000557597.1,ENST00000356296.4,ENST00000359560.3,ENST00000555394.1,ENST00000557486.1,ENST00000355058.3,ENST00000535282.1,ENST00000554546.1,ENST00000553997.1,ENST00000556772.1	chr14	73749066:73749213:73750788:73751082:73753817:73753881,	73750789	73751082	73750978	73750978	Nonsense_Mutation	C	A	p.E254X
LIHC	TCGA-G3-AAV5-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899121	133899121	Nonsense_Mutation	C	T	p.Q502X
LIHC	TCGA-G3-AAV5-01	NOVA1	ENST00000344429.5,ENST00000465357.2,ENST00000547619.1,ENST00000539517.2,ENST00000574031.1	chr14	26949182:26949349:27064615:27064759:27066506:27066642,	27064616	27064759	27064670	27064670	Nonsense_Mutation	G	A	p.Q76X
LIHC	TCGA-RC-A6M6-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128036748:128036951:128038022:128038207:128044278:128044593,	128038023	128038207	128038082	128038082	Nonsense_Mutation	C	A	p.E490X
LIHC	TCGA-RC-A6M6-01	EMP1	ENST00000544053.1	chr12	13349719:13349806:13366412:13366509:13366614:13366755,	13366413	13366509	13366481	13366481	Nonsense_Mutation	C	A	p.C49X
LIHC	TCGA-RC-A6M6-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577064	7577064	Nonsense_Mutation	T	A	p.K292X
LIHC	TCGA-ZP-A9D0-01	PRKAG2	ENST00000433631.2	chr7	151292430:151292540:151329154:151329224:151372505:151372723,151292430:151292537:151329154:151329224:151372505:151372723,	151329155	151329224	151329170	151329170	Nonsense_Mutation	C	A	p.E247X
LIHC	TCGA-DD-AACH-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2	chr1	156907040:156907288:156908209:156908305:156908940:156909077,156907226:156907288:156908209:156908305:156909339:156909532,	156908210	156908305	156908219	156908219	Nonsense_Mutation	T	A	p.K1395X
LIHC	TCGA-DD-AACH-01	TRAPPC6B	ENST00000469361.1,ENST00000555269.1,ENST00000330149.5	chr14	39621014:39621043:39623414:39623498:39627488:39627606,	39623415	39623498	39623438	39623438	Nonsense_Mutation	G	A	p.Q110X
LIHC	TCGA-G3-AAUZ-01	BNC2	ENST00000380667.2	chr9	16727794:16727995:16738357:16738483:16870643:16870704,16582980:16583083:16738357:16738483:16870643:16870704,	16738358	16738483	16738420	16738420	Nonsense_Mutation	C	A	p.E23X
LIHC	TCGA-G3-AAUZ-01	GNPTAB	ENST00000299314.7	chr12	102159868:102160072:102161814:102161938:102163798:102163969,	102161815	102161938	102161840	102161840	Nonsense_Mutation	G	T	p.C461X
LIHC	TCGA-FV-A496-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48556320:48556477:48559636:48559890:48563843:48564036,	48559637	48559890	48559880	48559880	Nonsense_Mutation	C	T	p.R4681X
LIHC	TCGA-FV-A496-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577636	57577636	Nonsense_Mutation	G	T	p.G831X
LIHC	TCGA-DD-A3A4-01	RGL1	ENST00000536277.1,ENST00000360851.3,ENST00000304685.4,ENST00000539189.1	chr1	183881215:183881402:183885580:183885835:183891355:183891470,	183885581	183885835	183885770	183885770	Nonsense_Mutation	G	T	p.E682X
LIHC	TCGA-DD-A3A4-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149557719	149557719	Nonsense_Mutation	C	A	p.C490X
LIHC	TCGA-ED-A7PY-01	IRF2	ENST00000393593.3,ENST00000510814.1,ENST00000507523.1,ENST00000505067.1	chr4	185329358:185329429:185339320:185339367:185339685:185339744,	185339321	185339367	185339323	185339323	Nonsense_Mutation	T	A	p.K137X
LIHC	TCGA-DD-A1EH-01	IRF2	ENST00000393593.3	chr4	185311856:185311903:185320068:185320233:185329311:185329429,	185320069	185320233	185320192	185320192	Nonsense_Mutation	C	A	p.E191X
LIHC	TCGA-DD-A1EH-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357576	50357576	Nonsense_Mutation	A	C	p.Y455X
LIHC	TCGA-ED-A459-01	SFXN4	ENST00000369131.4,ENST00000330036.6,ENST00000461438.1,ENST00000355697.2,ENST00000466218.1	chr10	120907289:120907372:120914573:120914689:120916189:120916268,	120914574	120914689	120914639	120914639	Nonsense_Mutation	T	A	p.K223X
LIHC	TCGA-ED-A459-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000553975.1,ENST00000393170.2,ENST00000334746.5	chr14	93712170:93712632:93714821:93715000:93717808:93717998,	93714822	93715000	93714872	93714872	Nonsense_Mutation	G	A	p.R691X
LIHC	TCGA-DD-A4NH-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48609935:48609971:48610103:48610172:48610294:48610375,	48610104	48610172	48610139	48610139	Nonsense_Mutation	T	A	p.K2289X
LIHC	TCGA-DD-A4NH-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2133695:2133817:2134228:2134716:2134951:2135027,	2134229	2134716	2134406	2134406	Nonsense_Mutation	C	T	p.Q1395X
LIHC	TCGA-FV-A3R2-01	PHTF1	ENST00000369600.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000369596.2	chr1	114254561:114254735:114255900:114256060:114269039:114269080,114254561:114254735:114255900:114256060:114267380:114267515,	114255901	114256060	114255975	114255975	Nonsense_Mutation	G	A	p.Q237X
LIHC	TCGA-FV-A3R2-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
LIHC	TCGA-DD-AACO-01	EIF3J	ENST00000536248.1,ENST00000261868.5,ENST00000424492.3	chr15	44846821:44846865:44849686:44849848:44852446:44852520,	44849687	44849848	44849749	44849749	Nonsense_Mutation	G	T	p.E158X
LIHC	TCGA-CC-5258-01	TDRD5	ENST00000444136.1,ENST00000417329.1	chr1	179621173:179621332:179623335:179623497:179631238:179631421,	179623336	179623497	179623394	179623394	Nonsense_Mutation	T	G	p.L740X
LIHC	TCGA-DD-AADP-01	NBAS	ENST00000417461.1,ENST00000281513.5,ENST00000442506.1,ENST00000441750.1	chr2	15307336:15307447:15319111:15319240:15326865:15327004,	15319112	15319240	15319165	15319165	Nonsense_Mutation	G	A	p.R2263X
LIHC	TCGA-DD-AADN-01	FHL5	ENST00000541107.1,ENST00000450218.1,ENST00000326771.2	chr6	97051477:97051648:97052625:97052800:97053777:97053947,	97052626	97052800	97052637	97052637	Nonsense_Mutation	C	A	p.Y57X
LIHC	TCGA-DD-AADN-01	NCR1	ENST00000338835.5,ENST00000447255.1,ENST00000594765.1	chr19	55417545:55417579:55417656:55417692:55417880:55418165,	55417657	55417692	55417692	55417692	Nonsense_Mutation	C	T	p.Q24X
LIHC	TCGA-MI-A75H-01	MLLT1	ENST00000252674.7	chr19	6222131:6222695:6226987:6227113:6230580:6230724,	6226988	6227113	6226990	6226990	Nonsense_Mutation	T	A	p.K182X
LIHC	TCGA-ES-A2HT-01	STX12	ENST00000373943.4	chr1	28128188:28128326:28136756:28136800:28138673:28138745,	28136757	28136800	28136791	28136791	Nonsense_Mutation	C	A	p.S154X
LIHC	TCGA-ES-A2HT-01	EPCAM	ENST00000474691.1	chr2	47596613:47596720:47600601:47601187:47602372:47602393,	47600602	47601187	47600664	47600664	Nonsense_Mutation	C	T	p.Q47X
LIHC	TCGA-ES-A2HT-01	EPCAM	ENST00000263735.4	chr2	47596613:47596720:47600601:47600709:47600946:47601132,	47600602	47600709	47600664	47600664	Nonsense_Mutation	C	T	p.Q47X
LIHC	TCGA-ES-A2HT-01	RECK	ENST00000475774.1,ENST00000479053.1,ENST00000377966.3	chr9	36060115:36060152:36063791:36063877:36065573:36065621,	36063792	36063877	36063817	36063817	Nonsense_Mutation	G	A	p.W99X
LIHC	TCGA-ES-A2HT-01	AKAP11	ENST00000025301.2	chr13	42888029:42888076:42891663:42891824:42893223:42897396,	42891664	42891824	42891711	42891711	Nonsense_Mutation	G	T	p.E1818X
LIHC	TCGA-ES-A2HT-01	UGGT2	ENST00000491509.1,ENST00000376747.3	chr13	96529532:96529618:96529951:96530110:96536744:96536934,	96529952	96530110	96530059	96530059	Nonsense_Mutation	C	A	p.G1094X
LIHC	TCGA-ES-A2HT-01	HEXA	ENST00000567159.1,ENST00000568777.1,ENST00000567411.1,ENST00000569410.1,ENST00000268097.5,ENST00000457859.2,ENST00000566304.1,ENST00000567027.1	chr15	72642920:72642991:72643473:72643575:72645408:72645519,	72643474	72643575	72643538	72643538	Nonsense_Mutation	C	T	p.W203X
LIHC	TCGA-ES-A2HT-01	PKD1L2	ENST00000526632.1,ENST00000525539.1,ENST00000299598.7,ENST00000337114.4	chr16	81214755:81214876:81219096:81219304:81222485:81222603,	81219097	81219304	81219117	81219117	Nonsense_Mutation	C	T	p.W659X
LIHC	TCGA-ES-A2HT-01	EZH1	ENST00000592743.1,ENST00000586103.1,ENST00000585912.1,ENST00000590078.1,ENST00000435174.1,ENST00000415827.2,ENST00000586867.1,ENST00000428826.2,ENST00000585893.1,ENST00000588897.1,ENST00000591330.1,ENST00000586382.1	chr17	40869993:40870085:40870471:40870635:40871122:40871196,	40870472	40870635	40870506	40870506	Nonsense_Mutation	G	T	p.C299X
LIHC	TCGA-ES-A2HT-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210227	37210227	Nonsense_Mutation	C	T	p.Q170X
LIHC	TCGA-ES-A2HT-01	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71822007:71822123:71822968:71823070:71825120:71825250,	71822969	71823070	71822975	71822975	Nonsense_Mutation	G	A	p.R971X
LIHC	TCGA-CC-A8HU-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179562594:179563002:179564762:179564953:179587733:179587817,	179564763	179564953	179564900	179564900	Nonsense_Mutation	A	T	p.K260X
LIHC	TCGA-UB-A7MB-01	PTH2R	ENST00000413482.1,ENST00000272847.2	chr2	209324619:209324686:209345794:209345889:209353736:209353875,	209345795	209345889	209345825	209345825	Nonsense_Mutation	A	T	p.R338X
LIHC	TCGA-UB-A7MB-01	CNBP	ENST00000500450.2	chr3	128890288:128890381:128890497:128890614:128902618:128902707,128890288:128890351:128890497:128890614:128902618:128902707,	128890498	128890614	128890513	128890513	Nonsense_Mutation	T	A	p.R30X
LIHC	TCGA-UB-A7MB-01	CNBP	ENST00000504813.1	chr3	128890288:128890381:128890476:128890614:128902618:128902707,128890288:128890351:128890476:128890614:128902618:128902707,	128890477	128890614	128890513	128890513	Nonsense_Mutation	T	A	p.R30X
LIHC	TCGA-UB-A7MB-01	CNBP	ENST00000512338.1	chr3	128890288:128890381:128890494:128890614:128902618:128902707,	128890495	128890614	128890513	128890513	Nonsense_Mutation	T	A	p.R30X
LIHC	TCGA-UB-A7MB-01	KIF21A	ENST00000544797.2,ENST00000546817.1,ENST00000552961.1,ENST00000361418.5,ENST00000547108.1,ENST00000395670.3,ENST00000361961.3	chr12	39726838:39726909:39727013:39727082:39730897:39731005,	39727014	39727082	39727052	39727052	Nonsense_Mutation	T	A	p.R817X
LIHC	TCGA-UB-A7MB-01	ADCY4	ENST00000310677.4,ENST00000545213.1,ENST00000554781.1,ENST00000554577.1,ENST00000554068.2,ENST00000418030.2	chr14	24791829:24791914:24792109:24792294:24792549:24792660,	24792110	24792294	24792119	24792119	Nonsense_Mutation	A	T	p.L778X
LIHC	TCGA-UB-A7MB-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26495473:26495683:26499542:26499644:26512204:26512291,	26499543	26499644	26499544	26499544	Nonsense_Mutation	T	A	p.L350X
LIHC	TCGA-UB-A7MB-01	FBXO27	ENST00000509137.2,ENST00000594770.1,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39516158:39516194:39517509:39517645:39521668:39521764,	39517510	39517645	39517611	39517611	Nonsense_Mutation	T	A	p.R203X
LIHC	TCGA-UB-A7MB-01	CEACAM6	ENST00000199764.6	chr19	42265156:42265435:42265876:42266131:42270090:42270203,	42265877	42266131	42265920	42265920	Nonsense_Mutation	C	G	p.Y249X
LIHC	TCGA-UB-A7MB-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938245	76938245	Nonsense_Mutation	T	A	p.R835X
LIHC	TCGA-G3-A7M5-01	SLC44A5	ENST00000370859.3,ENST00000370855.5,ENST00000469525.1	chr1	75708604:75708696:75716894:75716979:75740642:75740727,	75716895	75716979	75716965	75716965	Nonsense_Mutation	A	T	p.L92X
LIHC	TCGA-G3-A7M5-01	DYNAP	ENST00000321600.1	chr18	52258445:52258570:52262169:52262334:52265043:52265910,	52262170	52262334	52262216	52262216	Nonsense_Mutation	G	A	p.W61X
LIHC	TCGA-DD-AADR-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219595	45219595	Nonsense_Mutation	C	A	p.E466X
LIHC	TCGA-DD-AADR-01	KCNH6	ENST00000456941.2,ENST00000583465.1,ENST00000314672.5,ENST00000581784.1	chr17	61619601:61619795:61620936:61621021:61621609:61621772,	61620937	61621021	61620964	61620964	Nonsense_Mutation	C	T	p.R726X
LIHC	TCGA-DD-AADR-01	GIPC1	ENST00000345425.2,ENST00000393033.4,ENST00000586027.1,ENST00000393029.3,ENST00000393028.1,ENST00000587210.1,ENST00000591349.1	chr19	14590223:14590336:14591116:14591297:14591404:14591590,	14591117	14591297	14591237	14591237	Nonsense_Mutation	C	A	p.E179X
LIHC	TCGA-DD-AAE7-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101213	27101213	Nonsense_Mutation	C	T	p.Q1499X
LIHC	TCGA-DD-AAE7-01	MAP2K3	ENST00000526076.2,ENST00000395491.2,ENST00000342679.4,ENST00000496046.1,ENST00000316920.6,ENST00000361818.5	chr17	21202189:21202238:21203856:21203970:21204185:21204229,	21203857	21203970	21203863	21203863	Nonsense_Mutation	G	T	p.E58X
LIHC	TCGA-DD-AAE7-01	MAP2K3	ENST00000583508.1	chr17	21202189:21202238:21203782:21203970:21204185:21204229,	21203783	21203970	21203863	21203863	Nonsense_Mutation	G	T	p.E58X
LIHC	TCGA-DD-AAE7-01	CASS4	ENST00000371336.3,ENST00000360314.3	chr20	55025654:55025735:55026874:55028185:55033395:55033836,	55026875	55028185	55027580	55027580	Nonsense_Mutation	A	T	p.K450X
LIHC	TCGA-FV-A3I1-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470524	161470524	Nonsense_Mutation	T	G	p.L407X
LIHC	TCGA-FV-A3I1-01	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000389645.3,ENST00000533657.1,ENST00000529307.1,ENST00000530820.1	chr11	34111725:34111836:34112075:34112225:34113452:34113603,	34112076	34112225	34112151	34112151	Nonsense_Mutation	C	T	p.Q494X
LIHC	TCGA-CC-5263-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2,ENST00000431162.2	chr3	39171569:39171642:39171738:39171849:39172191:39172330,	39171739	39171849	39171742	39171742	Nonsense_Mutation	G	T	p.E745X
LIHC	TCGA-CC-5263-01	B4GALNT3	ENST00000535402.1,ENST00000266383.5	chr12	667673:667827:668460:668587:670508:672664,	668461	668587	668557	668557	Nonsense_Mutation	G	A	p.W953X
LIHC	TCGA-CC-5263-01	PDXDC1	ENST00000563679.1,ENST00000450288.2,ENST00000569715.1,ENST00000447912.2,ENST00000325823.7,ENST00000396410.4	chr16	15125591:15125763:15126717:15126836:15127134:15127256,	15126718	15126836	15126797	15126797	Nonsense_Mutation	A	T	p.K551X
LIHC	TCGA-CC-5263-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577107	7577107	Nonsense_Mutation	A	T	p.C277X
LIHC	TCGA-DD-AACU-01	ZNF423	ENST00000535559.1,ENST00000262383.2,ENST00000563137.2,ENST00000562871.1,ENST00000562520.1,ENST00000561648.1,ENST00000567169.1	chr16	49559273:49559405:49660080:49660165:49669570:49672785,	49660081	49660165	49660081	49660081	Nonsense_Mutation	C	A	p.E1193X
LIHC	TCGA-DD-A39V-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000557005.1	chr14	64496612:64496777:64497733:64498075:64514717:64514873,	64497734	64498075	64497758	64497758	Nonsense_Mutation	C	T	p.Q2302X
LIHC	TCGA-CC-A3MA-01	WSB1	ENST00000581440.1,ENST00000262394.2,ENST00000427287.2,ENST00000581185.1,ENST00000467843.2	chr17	25628906:25628982:25630392:25630661:25631805:25631929,	25630393	25630661	25630657	25630657	Nonsense_Mutation	T	A	p.Y158X
LIHC	TCGA-K7-A6G5-01	COQ6	ENST00000556588.1,ENST00000334571.2,ENST00000556299.1,ENST00000394026.4,ENST00000238709.4	chr14	74428165:74428273:74428439:74428606:74429672:74429808,	74428440	74428606	74428466	74428466	Nonsense_Mutation	G	T	p.E413X
LIHC	TCGA-K7-A6G5-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2	chr20	9440281:9440457:9449217:9449319:9453436:9453494,	9449218	9449319	9449315	9449315	Nonsense_Mutation	G	T	p.E1116X
LIHC	TCGA-XR-A8TF-01	ATRN	ENST00000262919.5	chr20	3614957:3615036:3619474:3619582:3624800:3624915,	3619475	3619582	3619493	3619493	Nonsense_Mutation	C	T	p.Q1321X
LIHC	TCGA-NI-A4U2-01	CTSK	ENST00000480670.1	chr1	150776516:150776715:150778336:150778492:150779161:150779244,	150778337	150778492	150778408	150778408	Nonsense_Mutation	C	A	p.E110X
LIHC	TCGA-BC-4073-01	PXMP4	ENST00000217398.3	chr20	32295294:32295775:32298360:32298579:32302479:32302542,	32298361	32298579	32298387	32298387	Nonsense_Mutation	C	A	p.G117*
LIHC	TCGA-BC-4073-01	PXMP4	ENST00000409299.3	chr20	32295294:32295775:32298360:32298559:32302479:32302542,	32298361	32298559	32298387	32298387	Nonsense_Mutation	C	A	p.G117*
LIHC	TCGA-BC-4073-01	SPIDR	ENST00000521214.1,ENST00000519661.1,ENST00000524006.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48352962:48353104:48508372:48508568:48511507:48511597,	48508373	48508568	48508456	48508456	Nonsense_Mutation	C	G	p.S394*
LIHC	TCGA-BC-4073-01	MBD1	ENST00000349085.2,ENST00000592060.1,ENST00000398488.1,ENST00000587605.1	chr18	47799217:47799325:47799933:47800233:47800555:47800720,47799217:47799325:47799933:47800233:47801346:47801415,	47799934	47800233	47800056	47800056	Nonsense_Mutation	C	A	p.E442*
LIHC	TCGA-BC-4073-01	JKAMP	ENST00000555491.1	chr14	59961735:59961805:59965444:59965626:59967908:59967965,	59965445	59965626	59965466	59965466	Nonsense_Mutation	T	G	p.Y174*
LIHC	TCGA-BC-A10Q-01	MPP5	ENST00000261681.4,ENST00000555925.1	chr14	67768105:67768183:67768688:67768835:67769126:67769288,	67768689	67768835	67768776	67768776	Nonsense_Mutation	C	T	p.Q248*
LIHC	TCGA-BC-A10R-01	AKAP6	ENST00000280979.4,ENST00000555207.1,ENST00000555950.1,ENST00000557354.1,ENST00000557272.1	chr14	33147516:33147665:33165195:33165316:33201659:33201790,	33165196	33165316	33165314	33165314	Nonsense_Mutation	A	T	p.K1000*
LIHC	TCGA-BC-A10S-01	CD22	ENST00000270311.6,ENST00000419549.2,ENST00000085219.5,ENST00000544992.2,ENST00000601769.1	chr19	35828657:35828924:35829070:35829334:35831783:35831853,	35829071	35829334	35829220	35829220	Nonsense_Mutation	G	T	p.E379*
LIHC	TCGA-BC-A10U-01	SEC23B	ENST00000422877.1,ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000262544.2	chr20	18523011:18523046:18523662:18523816:18526599:18526677,	18523663	18523816	18523791	18523791	Nonsense_Mutation	G	A	p.W547*
LIHC	TCGA-BC-A10Z-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000424310.2	chr5	158600990:158601166:158603639:158603875:158608967:158609059,	158603640	158603875	158603765	158603765	Nonsense_Mutation	C	A	p.E166*
LIHC	TCGA-BC-A110-01	GUSB	ENST00000421103.1	chr7	65439512:65439691:65439905:65440058:65441001:65441189,65439512:65439691:65439905:65440058:65444820:65444898,	65439906	65440058	65440043	65440043	Nonsense_Mutation	G	A	p.Q310*
LIHC	TCGA-BC-A216-01	TP53BP2	ENST00000473135.1,ENST00000343537.7	chr1	223998165:223998215:224001941:224002055:224008921:224009069,	224001942	224002055	224002032	224002032	Nonsense_Mutation	G	A	p.R67*
LIHC	TCGA-BC-A3KF-01	TBPL1	ENST00000237264.4	chr6	134305586:134305617:134305714:134305809:134308098:134308637,	134305715	134305809	134305776	134305776	Nonsense_Mutation	C	T	p.Q150*
LIHC	TCGA-BC-A5W4-01	SLC44A5	ENST00000370859.3,ENST00000535611.1,ENST00000370855.5	chr1	75685484:75685577:75688045:75688145:75693410:75693542,	75688046	75688145	75688080	75688080	Nonsense_Mutation	G	A	p.R351*
LIHC	TCGA-BC-A5W4-01	PTK2B	ENST00000521164.1,ENST00000420218.2,ENST00000544172.1,ENST00000346049.5,ENST00000338238.4,ENST00000397501.1	chr8	27183080:27183198:27255064:27255305:27277411:27277518,	27255065	27255305	27255270	27255270	Nonsense_Mutation	A	T	p.K57*
LIHC	TCGA-BD-A2L6-01	FRA10AC1	ENST00000359204.4,ENST00000536233.1,ENST00000371430.2,ENST00000394100.2	chr10	95436409:95436448:95441236:95441355:95443812:95443855,	95441237	95441355	95441348	95441348	Nonsense_Mutation	C	A	p.E226*
LIHC	TCGA-BD-A2L6-01	APBB1	ENST00000608704.1,ENST00000524626.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000529519.1	chr11	6417329:6417445:6422218:6422302:6422574:6422659,	6422219	6422302	6422250	6422250	Nonsense_Mutation	G	C	p.Y547*
LIHC	TCGA-BD-A3EP-01	PKP4	ENST00000421462.1,ENST00000426248.3	chr2	159477742:159477933:159481466:159481939:159488264:159488444,	159481467	159481939	159481873	159481873	Nonsense_Mutation	C	T	p.Q363*
LIHC	TCGA-BD-A3EP-01	PKP4	ENST00000481115.2	chr2	159477742:159477933:159481636:159481939:159488264:159488444,	159481637	159481939	159481873	159481873	Nonsense_Mutation	C	T	p.Q363*
LIHC	TCGA-BD-A3EP-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1	chr2	159477742:159477933:159481389:159481939:159488264:159488444,	159481390	159481939	159481873	159481873	Nonsense_Mutation	C	T	p.Q363*
LIHC	TCGA-BD-A3ER-01	EFCAB5	ENST00000378738.3,ENST00000440741.3	chr17	28384693:28384908:28386562:28386719:28400100:28400144,	28386563	28386719	28386624	28386624	Nonsense_Mutation	G	A	p.W881*
LIHC	TCGA-BD-A3ER-01	ASCC2	ENST00000542393.1,ENST00000458594.1,ENST00000478812.1,ENST00000472433.1,ENST00000307790.3,ENST00000397771.2	chr22	30202824:30202893:30204099:30204174:30209418:30209531,	30204100	30204174	30204137	30204137	Nonsense_Mutation	C	A	p.E291*
LIHC	TCGA-BW-A5NP-01	PGR	ENST00000534780.1,ENST00000526300.1,ENST00000263463.5	chr11	100962490:100962607:100996737:100996889:100998164:100999801,	100996738	100996889	100996842	100996842	Nonsense_Mutation	A	C	p.L562*
LIHC	TCGA-BW-A5NQ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
LIHC	TCGA-CC-5258-01	TDRD5	ENST00000444136.1,ENST00000417329.1	chr1	179621173:179621332:179623335:179623497:179631238:179631421,	179623336	179623497	179623394	179623394	Nonsense_Mutation	T	G	p.L740*
LIHC	TCGA-CC-5259-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210908	37210908	Nonsense_Mutation	A	T	p.K397*
LIHC	TCGA-CC-5259-01	TINAG	ENST00000259782.4,ENST00000486436.1,ENST00000370864.3,ENST00000370869.3	chr6	54185376:54185440:54186094:54186184:54191599:54191638,	54186095	54186184	54186162	54186162	Nonsense_Mutation	C	T	p.Q163*
LIHC	TCGA-CC-5262-01	ATP1A2	ENST00000392233.3,ENST00000447527.1,ENST00000361216.3,ENST00000472488.1	chr1	160100211:160100387:160104273:160104410:160104934:160105085,	160104274	160104410	160104352	160104352	Nonsense_Mutation	G	T	p.E636*
LIHC	TCGA-CC-5262-01	IRF4	ENST00000493114.1	chr6	391767:391809:393097:393368:394820:395007,	393098	393368	393366	393366	Nonsense_Mutation	A	T	p.K72*
LIHC	TCGA-CC-5263-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2,ENST00000431162.2	chr3	39171569:39171642:39171738:39171849:39172191:39172330,	39171739	39171849	39171742	39171742	Nonsense_Mutation	G	T	p.E746*
LIHC	TCGA-CC-5263-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577107	7577107	Nonsense_Mutation	A	T	p.C277*
LIHC	TCGA-CC-5263-01	PDXDC1	ENST00000563679.1,ENST00000450288.2,ENST00000569715.1,ENST00000447912.2,ENST00000325823.7,ENST00000396410.4	chr16	15125591:15125763:15126717:15126836:15127134:15127256,	15126718	15126836	15126797	15126797	Nonsense_Mutation	A	T	p.K551*
LIHC	TCGA-CC-5263-01	B4GALNT3	ENST00000535402.1,ENST00000266383.5	chr12	667673:667827:668460:668587:670508:672664,	668461	668587	668557	668557	Nonsense_Mutation	G	A	p.W953*
LIHC	TCGA-CC-5264-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209788321:209788752:209789815:209789969:209790754:209790922,	209789816	209789969	209789918	209789918	Nonsense_Mutation	G	A	p.Q1094*
LIHC	TCGA-CC-5264-01	SRM	ENST00000459997.1	chr1	11118856:11118949:11119281:11119437:11119833:11120077,	11119282	11119437	11119332	11119332	Nonsense_Mutation	G	A	p.Q80*
LIHC	TCGA-CC-5264-01	SRM	ENST00000376957.2	chr1	11118856:11118949:11119281:11119402:11119833:11120077,	11119282	11119402	11119332	11119332	Nonsense_Mutation	G	A	p.Q80*
LIHC	TCGA-CC-A123-01	TMTC2	ENST00000321196.3,ENST00000548305.1	chr12	83081259:83081448:83250788:83251359:83289596:83290425,	83250789	83251359	83250808	83250808	Nonsense_Mutation	C	T	p.Q29*
LIHC	TCGA-CC-A3MA-01	WSB1	ENST00000581440.1,ENST00000262394.2,ENST00000427287.2,ENST00000581185.1,ENST00000467843.2	chr17	25628906:25628982:25630392:25630661:25631805:25631929,	25630393	25630661	25630657	25630657	Nonsense_Mutation	T	A	p.Y158*
LIHC	TCGA-CC-A3MC-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662452	40662452	Nonsense_Mutation	C	T	p.Q740*
LIHC	TCGA-CC-A5UC-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363329	108363329	Nonsense_Mutation	G	A	p.W487*
LIHC	TCGA-CC-A5UD-01	TMEM245	ENST00000374586.3,ENST00000491854.1	chr9	111849452:111849622:111853201:111853435:111855754:111855865,	111853202	111853435	111853343	111853343	Nonsense_Mutation	T	A	p.R337*
LIHC	TCGA-CC-A5UD-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877186	16877186	Nonsense_Mutation	T	A	p.R3397*
LIHC	TCGA-CC-A5UD-01	SULT1C4	ENST00000409309.3	chr2	108998217:108998343:108999871:108999966:109002647:109002828,	108999872	108999966	108999919	108999919	Nonsense_Mutation	A	T	p.K190*
LIHC	TCGA-CC-A5UD-01	AKAP17A	ENST00000313871.3	chrX	1714276:1714425:1718084:1718325:1719551:1721395,	1718085	1718325	1718233	1718233	Nonsense_Mutation	G	T	p.E354*
LIHC	TCGA-CC-A5UE-01	ITGA3	ENST00000544892.1,ENST00000506401.2,ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48148674:48148882:48149349:48149546:48151279:48151368,	48149350	48149546	48149396	48149396	Nonsense_Mutation	G	T	p.E336*
LIHC	TCGA-CC-A5UE-01	USP9Y	ENST00000426564.2,ENST00000338981.3	chrY	14949836:14949978:14951789:14952540:14952935:14953059,	14951790	14952540	14951877	14951877	Nonsense_Mutation	G	T	p.E1809*
LIHC	TCGA-CC-A7IG-01	TAS1R1	ENST00000333172.6	chr1	6631000:6631275:6634690:6635452:6636474:6636687,	6634691	6635452	6635435	6635435	Nonsense_Mutation	C	T	p.R415*
LIHC	TCGA-CC-A7IG-01	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43796312	43796312	Nonsense_Mutation	A	T	p.K156*
LIHC	TCGA-CC-A7IG-01	TTLL9	ENST00000375938.4,ENST00000375922.4,ENST00000535842.1,ENST00000310998.4,ENST00000375934.4	chr20	30521602:30521661:30522494:30522691:30525198:30525312,	30522495	30522691	30522615	30522615	Nonsense_Mutation	C	T	p.Q310*
LIHC	TCGA-CC-A7IG-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578188	7578188	Nonsense_Mutation	C	A	p.E221*
LIHC	TCGA-CC-A7IH-01	HECTD1	ENST00000553700.1,ENST00000399332.1,ENST00000556224.1	chr14	31638559:31638674:31641066:31641165:31641251:31641328,	31641067	31641165	31641123	31641123	Nonsense_Mutation	G	A	p.Q426*
LIHC	TCGA-CC-A7IH-01	MUC6	ENST00000421673.2	chr11	1030946:1031056:1031168:1031259:1031606:1031733,	1031169	1031259	1031239	1031239	Nonsense_Mutation	G	C	p.Y168*
LIHC	TCGA-CC-A7IH-01	FURIN	ENST00000558794.1	chr15	91422900:91423004:91423096:91423345:91423920:91423986,	91423097	91423345	91423153	91423153	Nonsense_Mutation	C	T	p.Q439*
LIHC	TCGA-CC-A7IH-01	FURIN	ENST00000268171.3	chr15	91422900:91423004:91423096:91423214:91423323:91423503,	91423097	91423214	91423153	91423153	Nonsense_Mutation	C	T	p.Q439*
LIHC	TCGA-CC-A7IH-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33320362:33320399:33324493:33324562:33328166:33328321,	33324494	33324562	33324500	33324500	Nonsense_Mutation	T	A	p.R1986*
LIHC	TCGA-CC-A7IH-01	RBL1	ENST00000373664.3	chr20	35624751:35627332:35632104:35632269:35635813:35635962,	35632105	35632269	35632146	35632146	Nonsense_Mutation	T	A	p.R999*
LIHC	TCGA-CC-A7II-01	ESR1	ENST00000440973.1	chr6	152023009:152023140:152128977:152129499:152163731:152163922,	152128978	152129499	152129176	152129176	Nonsense_Mutation	C	A	p.Y43*
LIHC	TCGA-CC-A7II-01	POLR3D	ENST00000397802.4,ENST00000306433.4,ENST00000519237.1,ENST00000517789.1	chr8	22105369:22105521:22105666:22105791:22105993:22106130,	22105667	22105791	22105780	22105780	Nonsense_Mutation	G	T	p.E159*
LIHC	TCGA-CC-A7IJ-01	IQCB1	ENST00000310864.6	chr3	121508919:121509062:121514303:121514413:121515964:121516074,	121514304	121514413	121514404	121514404	Nonsense_Mutation	G	A	p.Q296*
LIHC	TCGA-CC-A7IJ-01	CREB3L3	ENST00000602147.1,ENST00000595923.1,ENST00000078445.2	chr19	4156994:4157292:4159660:4159779:4164499:4164637,	4159661	4159779	4159678	4159678	Nonsense_Mutation	G	T	p.G159*
LIHC	TCGA-CC-A7IK-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48689309:48689481:48689869:48689986:48690434:48690548,	48689870	48689986	48689876	48689876	Nonsense_Mutation	G	T	p.C1915*
LIHC	TCGA-CC-A7IK-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951205	235951205	Nonsense_Mutation	G	T	p.E598*
LIHC	TCGA-CC-A7IK-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023956	64023956	Nonsense_Mutation	T	A	p.K86*
LIHC	TCGA-CC-A7IK-01	NIPSNAP3B	ENST00000374762.3	chr9	107531143:107531302:107533129:107533279:107535102:107535189,	107533130	107533279	107533137	107533137	Nonsense_Mutation	T	A	p.Y146*
LIHC	TCGA-CC-A7IK-01	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3	chr6	28876584:28876617:28876749:28876865:28879472:28879495,	28876750	28876865	28876789	28876789	Nonsense_Mutation	T	A	p.K283*
LIHC	TCGA-DD-A113-01	FASN	ENST00000306749.2	chr17	80046844:80047048:80047125:80047260:80047507:80047602,	80047126	80047260	80047248	80047248	Nonsense_Mutation	C	A	p.E660*
LIHC	TCGA-DD-A113-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467323	58467323	Nonsense_Mutation	G	A	p.Q696*
LIHC	TCGA-DD-A113-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881512	48881512	Nonsense_Mutation	G	A	p.W78*
LIHC	TCGA-DD-A114-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677972	73677972	Nonsense_Mutation	C	T	p.Q1439*
LIHC	TCGA-DD-A114-01	TSC2	ENST00000461648.2,ENST00000353929.4,ENST00000350773.4,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2098033:2098066:2098587:2098754:2100400:2100487,	2098588	2098754	2098719	2098719	Nonsense_Mutation	C	T	p.Q35*
LIHC	TCGA-DD-A116-01	PPP1CC	ENST00000546933.1,ENST00000551676.1,ENST00000335007.5,ENST00000550991.1,ENST00000340766.5	chr12	111160428:111160500:111162464:111162569:111168333:111168564,	111162465	111162569	111162541	111162541	Nonsense_Mutation	C	T	p.W149*
LIHC	TCGA-DD-A118-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670985	151670985	Nonsense_Mutation	A	T	p.K487*
LIHC	TCGA-DD-A119-01	IQCB1	ENST00000460108.1,ENST00000349820.6,ENST00000393650.3,ENST00000310864.6	chr3	121526190:121526290:121527762:121527856:121544897:121545027,	121527763	121527856	121527778	121527778	Nonsense_Mutation	C	A	p.E158*
LIHC	TCGA-DD-A119-01	ARHGAP10	ENST00000506054.1,ENST00000336498.3	chr4	148800382:148800489:148802988:148803083:148827788:148827870,	148802989	148803083	148802995	148802995	Nonsense_Mutation	G	T	p.G316*
LIHC	TCGA-DD-A11C-01	IL12RB1	ENST00000593993.2,ENST00000322153.7,ENST00000600835.2	chr19	18187106:18187137:18188325:18188465:18191641:18191811,	18188326	18188465	18188364	18188364	Nonsense_Mutation	G	A	p.Q171*
LIHC	TCGA-DD-A1E9-01	ANKHD1	ENST00000360839.2,ENST00000297183.6,ENST00000421134.1	chr5	139866542:139866645:139876104:139876863:139884405:139884551,	139876105	139876863	139876827	139876827	Nonsense_Mutation	C	T	p.Q990*
LIHC	TCGA-DD-A1EA-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662939	52662939	Nonsense_Mutation	G	A	p.R440*
LIHC	TCGA-DD-A1EA-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425574	77425574	Nonsense_Mutation	C	A	p.E1284*
LIHC	TCGA-DD-A1EC-01	LAMP2	ENST00000371335.4,ENST00000200639.4	chrX	119589211:119589425:119590505:119590624:119602960:119603161,	119590506	119590624	119590608	119590608	Nonsense_Mutation	A	C	p.Y27*
LIHC	TCGA-DD-A1ED-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402917	52402917	Nonsense_Mutation	C	A	p.E30*
LIHC	TCGA-DD-A1EH-01	IRF2	ENST00000393593.3	chr4	185311856:185311903:185320068:185320233:185329311:185329429,	185320069	185320233	185320192	185320192	Nonsense_Mutation	C	A	p.E191*
LIHC	TCGA-DD-A1EH-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357576	50357576	Nonsense_Mutation	A	C	p.Y455*
LIHC	TCGA-DD-A1EI-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2	chr6	109768275:109768432:109768559:109768643:109768883:109768925,	109768560	109768643	109768571	109768571	Nonsense_Mutation	G	A	p.Q706*
LIHC	TCGA-DD-A1EK-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1	chr3	64554043:64554211:64579933:64580110:64582505:64582667,	64579934	64580110	64579956	64579956	Nonsense_Mutation	C	T	p.W1445*
LIHC	TCGA-DD-A1EL-01	LRIG2	ENST00000466161.1,ENST00000361127.5,ENST00000492207.1	chr1	113657048:113657498:113658908:113659058:113661854:113662145,	113658909	113659058	113658968	113658968	Nonsense_Mutation	G	T	p.E864*
LIHC	TCGA-DD-A39V-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000557005.1	chr14	64496612:64496777:64497733:64498075:64514717:64514873,	64497734	64498075	64497758	64497758	Nonsense_Mutation	C	T	p.Q2302*
LIHC	TCGA-DD-A39W-01	WDR45B	ENST00000392325.4,ENST00000571767.1,ENST00000571835.1	chr17	80575229:80575273:80576918:80577004:80579484:80579650,	80576919	80577004	80576976	80576976	Nonsense_Mutation	G	C	p.S216*
LIHC	TCGA-DD-A39X-01	NUP107	ENST00000535718.1,ENST00000378905.2	chr12	69083312:69083399:69084410:69084526:69090598:69090690,	69084411	69084526	69084425	69084425	Nonsense_Mutation	C	T	p.R68*
LIHC	TCGA-DD-A39Z-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40853607	40853607	Nonsense_Mutation	C	A	p.G263*
LIHC	TCGA-DD-A39Z-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000450149.2,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3	chr16	71795414:71795470:71798252:71798351:71798548:71798578,	71798253	71798351	71798318	71798318	Nonsense_Mutation	C	A	p.G285*
LIHC	TCGA-DD-A39Z-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144890960	144890960	Nonsense_Mutation	C	T	p.W645*
LIHC	TCGA-DD-A3A2-01	HNF1A	ENST00000400024.2,ENST00000543427.1,ENST00000560968.1,ENST00000541924.1,ENST00000402929.1,ENST00000544413.1,ENST00000541395.1	chr12	121416871:121416897:121426635:121426835:121431322:121431509,	121426636	121426835	121426820	121426820	Nonsense_Mutation	C	T	p.R171*
LIHC	TCGA-DD-A3A3-01	GNG5	ENST00000370645.4	chr1	84967508:84967653:84971693:84971984:84972118:84972248,	84971694	84971984	84971732	84971732	Nonsense_Mutation	G	A	p.Q15*
LIHC	TCGA-DD-A3A4-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149557719	149557719	Nonsense_Mutation	C	A	p.C490*
LIHC	TCGA-DD-A3A4-01	RGL1	ENST00000536277.1,ENST00000360851.3,ENST00000304685.4,ENST00000539189.1	chr1	183881215:183881402:183885580:183885835:183891355:183891470,	183885581	183885835	183885770	183885770	Nonsense_Mutation	G	T	p.E682*
LIHC	TCGA-DD-A3A5-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32260229:32260478:32369180:32369393:32446927:32447080,	32369181	32369393	32369238	32369238	Nonsense_Mutation	G	T	p.E91*
LIHC	TCGA-DD-A3A7-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73679798	73679798	Nonsense_Mutation	T	A	p.Y2047*
LIHC	TCGA-DD-A3A8-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112102885:112103087:112111325:112111434:112116486:112116600,	112111326	112111434	112111380	112111380	Nonsense_Mutation	C	G	p.Y159*
LIHC	TCGA-DD-A3A9-01	RPAP2	ENST00000610020.1	chr1	92786155:92786191:92789001:92789932:92798947:92799030,	92789002	92789932	92789745	92789745	Nonsense_Mutation	G	A	p.W423*
LIHC	TCGA-DD-A3A9-01	MIA3	ENST00000344922.5,ENST00000354906.3,ENST00000340535.7	chr1	222818895:222819027:222822170:222822192:222823633:222823657,	222822171	222822192	222822189	222822189	Nonsense_Mutation	C	T	p.Q1210*
LIHC	TCGA-DD-A3A9-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17614104:17614258:17616190:17616309:17617221:17617371,	17616191	17616309	17616198	17616198	Nonsense_Mutation	C	A	p.E817*
LIHC	TCGA-DD-A3A9-01	SEC14L4	ENST00000320982.3,ENST00000392772.2	chr22	30891914:30891958:30899663:30899755:30901544:30901637,	30899664	30899755	30899672	30899672	Nonsense_Mutation	C	T	p.W41*
LIHC	TCGA-DD-A3A9-01	SEC14L4	ENST00000321205.5,ENST00000540456.1,ENST00000381982.3	chr22	30891914:30891958:30899663:30899739:30901544:30901637,	30899664	30899739	30899672	30899672	Nonsense_Mutation	C	T	p.W41*
LIHC	TCGA-DD-A4NA-01	EML4	ENST00000401738.3,ENST00000318522.5	chr2	42483640:42483770:42488260:42488434:42490317:42490446,	42488261	42488434	42488346	42488346	Nonsense_Mutation	C	T	p.R142*
LIHC	TCGA-DD-A4NE-01	GORAB	ENST00000367762.1	chr1	170501291:170501425:170508350:170508708:170511631:170511733,	170508351	170508708	170508682	170508682	Nonsense_Mutation	C	A	p.C156*
LIHC	TCGA-DD-A4NE-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257754	6257754	Nonsense_Mutation	G	T	p.C25*
LIHC	TCGA-DD-A4NG-01	NBAS	ENST00000281513.5,ENST00000442506.1,ENST00000441750.1	chr2	15374668:15374871:15378591:15378810:15415607:15415942,	15378592	15378810	15378653	15378653	Nonsense_Mutation	G	C	p.S1961*
LIHC	TCGA-DD-A4NH-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2133695:2133817:2134228:2134716:2134951:2135027,	2134229	2134716	2134406	2134406	Nonsense_Mutation	C	T	p.Q1395*
LIHC	TCGA-DD-A4NH-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48609935:48609971:48610103:48610172:48610294:48610375,	48610104	48610172	48610139	48610139	Nonsense_Mutation	T	A	p.K2289*
LIHC	TCGA-DD-A4NJ-01	KCNMA1	ENST00000406533.3,ENST00000286628.8,ENST00000457953.1,ENST00000372437.1,ENST00000404771.3	chr10	78729731:78729825:78761164:78761338:78771724:78771801,	78761165	78761338	78761222	78761222	Nonsense_Mutation	T	A	p.R737*
LIHC	TCGA-DD-A4NO-01	NFE2L2	ENST00000423513.1,ENST00000446151.2,ENST00000397063.4	chr2	178097977:178098067:178098732:178098999:178129259:178129387,178097977:178098067:178098732:178098999:178128130:178128182,	178098733	178098999	178098810	178098810	Nonsense_Mutation	C	A	p.E79*
LIHC	TCGA-DD-A4NP-01	HDAC3	ENST00000519474.1,ENST00000523088.1,ENST00000459727.1,ENST00000467533.1,ENST00000305264.3,ENST00000469550.2	chr5	141007459:141007524:141007680:141007754:141008125:141008129,	141007681	141007754	141007750	141007750	Nonsense_Mutation	G	C	p.Y232*
LIHC	TCGA-DD-A4NR-01	ZNF197	ENST00000383744.4,ENST00000344387.4,ENST00000383745.2,ENST00000334075.6,ENST00000396058.1	chr3	44672553:44672713:44673596:44673688:44673964:44674091,	44673597	44673688	44673680	44673680	Nonsense_Mutation	C	T	p.Q212*
LIHC	TCGA-DD-A4NS-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46455023:46455178:46456398:46456587:46465037:46465148,	46456399	46456587	46456448	46456448	Nonsense_Mutation	G	T	p.Y924*
LIHC	TCGA-DD-A4NS-01	ZNF430	ENST00000599548.1,ENST00000261560.5,ENST00000594110.1	chr19	21205594:21205687:21216261:21216388:21216891:21216990,	21216262	21216388	21216304	21216304	Nonsense_Mutation	G	T	p.E47*
LIHC	TCGA-DD-A4NV-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
LIHC	TCGA-DD-A73B-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120242	12120242	Nonsense_Mutation	C	T	p.Q72*
LIHC	TCGA-DD-A73D-01	PDE4DIP	ENST00000313382.9,ENST00000479369.2	chr1	144866591:144866723:144867920:144868172:144871695:144871881,144866591:144866723:144867920:144868172:144873876:144874029,	144867921	144868172	144868027	144868027	Nonsense_Mutation	G	T	p.Y1940*
LIHC	TCGA-DD-A73E-01	TARS	ENST00000502553.1,ENST00000265112.3,ENST00000514259.1	chr5	33445429:33445510:33448646:33448837:33453398:33453517,33445429:33445510:33448646:33448837:33453393:33453451,	33448647	33448837	33448802	33448802	Nonsense_Mutation	G	A	p.W98*
LIHC	TCGA-DD-A73E-01	PLB1	ENST00000444257.1,ENST00000327757.5,ENST00000404858.1,ENST00000422425.2	chr2	28827593:28827626:28828719:28828815:28829362:28829434,	28828720	28828815	28828786	28828786	Nonsense_Mutation	C	T	p.Q999*
LIHC	TCGA-DD-A73G-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16095022:16095125:16096903:16097073:16101112:16101126,	16096904	16097073	16096974	16096974	Nonsense_Mutation	C	G	p.Y204*
LIHC	TCGA-DD-A73G-01	CPNE3	ENST00000523072.1,ENST00000521271.1,ENST00000198765.4	chr8	87544736:87544808:87549790:87549874:87552472:87552562,	87549791	87549874	87549817	87549817	Nonsense_Mutation	C	A	p.Y162*
LIHC	TCGA-ED-A459-01	CYP24A1	ENST00000395955.3	chr20	52788115:52788209:52789447:52789638:52789860:52789955,	52789448	52789638	52789494	52789494	Nonsense_Mutation	T	A	p.K135*
LIHC	TCGA-ED-A459-01	SFXN4	ENST00000369131.4,ENST00000330036.6,ENST00000461438.1,ENST00000355697.2,ENST00000466218.1	chr10	120907289:120907372:120914573:120914689:120916189:120916268,	120914574	120914689	120914639	120914639	Nonsense_Mutation	T	A	p.K223*
LIHC	TCGA-ED-A459-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000553975.1,ENST00000393170.2,ENST00000334746.5	chr14	93712170:93712632:93714821:93715000:93717808:93717998,	93714822	93715000	93714872	93714872	Nonsense_Mutation	G	A	p.R691*
LIHC	TCGA-ED-A4XI-01	IGSF9B	ENST00000321016.8,ENST00000527648.2,ENST00000533871.2	chr11	133796810:133796986:133799565:133799677:133800878:133801029,	133799566	133799677	133799610	133799610	Nonsense_Mutation	C	T	p.W529*
LIHC	TCGA-ED-A4XI-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563379	32563379	Nonsense_Mutation	T	A	p.Y1168*
LIHC	TCGA-ED-A66Y-01	CCNC	ENST00000520371.1,ENST00000484049.2,ENST00000521017.1,ENST00000518714.1,ENST00000326298.4,ENST00000523639.1,ENST00000369220.4,ENST00000482541.2	chr6	100009472:100009557:100010717:100010824:100016371:100016499,	100010718	100010824	100010759	100010759	Nonsense_Mutation	G	T	p.S33*
LIHC	TCGA-ED-A7PX-01	PRIMA1	ENST00000316227.3,ENST00000393140.1,ENST00000393143.1,ENST00000477603.1	chr14	94203586:94203716:94245521:94245657:94253971:94254095,	94245522	94245657	94245606	94245606	Nonsense_Mutation	G	A	p.R49*
LIHC	TCGA-ED-A7PY-01	IRF2	ENST00000393593.3,ENST00000510814.1,ENST00000507523.1,ENST00000505067.1	chr4	185329358:185329429:185339320:185339367:185339685:185339744,	185339321	185339367	185339323	185339323	Nonsense_Mutation	T	A	p.K137*
LIHC	TCGA-ED-A7PZ-01	MIB2	ENST00000360522.4,ENST00000514234.1	chr1	1560665:1560808:1560925:1561033:1562029:1562134,1560665:1560808:1560925:1561033:1562216:1562309,	1560926	1561033	1561031	1561031	Nonsense_Mutation	A	T	p.K382*
LIHC	TCGA-ED-A7PZ-01	MIB2	ENST00000520777.1	chr1	1560665:1560808:1560937:1561033:1562029:1562134,	1560938	1561033	1561031	1561031	Nonsense_Mutation	A	T	p.K382*
LIHC	TCGA-ED-A7PZ-01	MIB2	ENST00000479659.1	chr1	1560665:1560808:1560925:1562134:1562216:1562309,	1560926	1562134	1561031	1561031	Nonsense_Mutation	A	T	p.K382*
LIHC	TCGA-ED-A7XP-01	C9orf135	ENST00000480564.1,ENST00000527647.1	chr9	72435875:72435947:72459432:72459541:72471470:72471589,	72459433	72459541	72459518	72459518	Nonsense_Mutation	C	T	p.R80*
LIHC	TCGA-ED-A7XP-01	SEC24B	ENST00000265175.5,ENST00000399100.2	chr4	110354970:110355158:110384056:110384800:110394159:110394342,	110384057	110384800	110384263	110384263	Nonsense_Mutation	C	T	p.Q114*
LIHC	TCGA-EP-A2KA-01	ICMT	ENST00000489498.1,ENST00000343813.5	chr1	6284658:6285322:6291961:6292179:6294945:6295030,6284658:6285322:6291961:6292179:6293533:6293703,	6291962	6292179	6292060	6292060	Nonsense_Mutation	C	A	p.E192*
LIHC	TCGA-EP-A2KA-01	SLC26A6	ENST00000431213.1	chr3	48669370:48669477:48669677:48669770:48670406:48670517,	48669678	48669770	48669737	48669737	Nonsense_Mutation	T	A	p.R155*
LIHC	TCGA-EP-A2KA-01	SLC26A6	ENST00000395550.2,ENST00000383733.3,ENST00000482282.1,ENST00000358747.6,ENST00000420764.2,ENST00000480524.1,ENST00000307364.6	chr3	48669370:48669477:48669677:48669829:48670406:48670517,	48669678	48669829	48669737	48669737	Nonsense_Mutation	T	A	p.R155*
LIHC	TCGA-EP-A2KB-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359573	19359573	Nonsense_Mutation	C	A	p.Y1234*
LIHC	TCGA-EP-A3RK-01	TSC2	ENST00000461648.2,ENST00000353929.4,ENST00000350773.4,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2098033:2098066:2098587:2098754:2100400:2100487,	2098588	2098754	2098752	2098752	Nonsense_Mutation	A	T	p.R46*
LIHC	TCGA-EP-A3RK-01	PALMD	ENST00000496843.1,ENST00000263174.4	chr1	100152631:100152745:100154330:100155428:100159574:100160097,	100154331	100155428	100154970	100154970	Nonsense_Mutation	C	G	p.S385*
LIHC	TCGA-ES-A2HS-01	PMEPA1	ENST00000347215.4,ENST00000395814.1,ENST00000265626.4,ENST00000341744.3,ENST00000395816.3,ENST00000395819.3,ENST00000414037.1	chr20	56227462:56227654:56228088:56228142:56234598:56234753,	56228089	56228142	56228121	56228121	Nonsense_Mutation	C	A	p.E96*
LIHC	TCGA-ES-A2HS-01	XRN1	ENST00000472697.1,ENST00000264951.4,ENST00000392981.2	chr3	142132976:142133133:142135981:142136071:142137345:142137451,	142135982	142136071	142136023	142136023	Nonsense_Mutation	C	T	p.W465*
LIHC	TCGA-ES-A2HT-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196712581:196712758:196714946:196715129:196716240:196716634,	196714947	196715129	196715034	196715034	Nonsense_Mutation	C	A	p.S1133*
LIHC	TCGA-FV-A23B-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101342	27101342	Nonsense_Mutation	G	T	p.E1542*
LIHC	TCGA-FV-A2QQ-01	ZMYND12	ENST00000372565.3	chr1	42905526:42905696:42914137:42914309:42915588:42915730,	42914138	42914309	42914268	42914268	Nonsense_Mutation	G	T	p.Y98*
LIHC	TCGA-FV-A2QQ-01	TBC1D9B	ENST00000356834.3,ENST00000355235.3	chr5	179306046:179306197:179306627:179306789:179315102:179315192,	179306628	179306789	179306633	179306633	Nonsense_Mutation	T	A	p.K471*
LIHC	TCGA-FV-A2QR-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56247584	56247584	Nonsense_Mutation	C	A	p.E142*
LIHC	TCGA-FV-A2QR-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179562594:179563002:179564762:179564953:179587733:179587817,	179564763	179564953	179564922	179564922	Nonsense_Mutation	C	G	p.S267*
LIHC	TCGA-FV-A2QR-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20434540:20434608:20438482:20438617:20441343:20441749,	20438483	20438617	20438493	20438493	Nonsense_Mutation	C	A	p.S386*
LIHC	TCGA-FV-A3I1-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470524	161470524	Nonsense_Mutation	T	G	p.L407*
LIHC	TCGA-FV-A3I1-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228486959:228487223:228487582:228487846:228491375:228491639,	228487583	228487846	228487681	228487681	Nonsense_Mutation	G	T	p.E4525*
LIHC	TCGA-FV-A3R2-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
LIHC	TCGA-FV-A3R2-01	PHTF1	ENST00000369600.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000369596.2	chr1	114254561:114254735:114255900:114256060:114269039:114269080,114254561:114254735:114255900:114256060:114267380:114267515,	114255901	114256060	114255975	114255975	Nonsense_Mutation	G	A	p.Q237*
LIHC	TCGA-FV-A3R2-01	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69095161	69095161	Nonsense_Mutation	G	A	p.Q254*
LIHC	TCGA-FV-A495-01	ZMAT4	ENST00000297737.6,ENST00000519406.1	chr8	40438722:40438780:40532222:40532450:40554763:40554856,	40532223	40532450	40532341	40532341	Nonsense_Mutation	C	T	p.W153*
LIHC	TCGA-FV-A495-01	PKHD1L1	ENST00000378402.5,ENST00000526472.1	chr8	110535461:110535615:110539012:110539249:110542308:110542489,	110539013	110539249	110539189	110539189	Nonsense_Mutation	G	T	p.G4221*
LIHC	TCGA-FV-A495-01	ZCCHC2	ENST00000586834.1,ENST00000585873.1,ENST00000269499.5	chr18	60223435:60223530:60225919:60226003:60227819:60227877,	60225920	60226003	60225965	60225965	Nonsense_Mutation	T	G	p.L485*
LIHC	TCGA-FV-A495-01	MYOF	ENST00000359263.4,ENST00000371489.1,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95159148:95159252:95161174:95161301:95161988:95162104,	95161175	95161301	95161196	95161196	Nonsense_Mutation	G	A	p.R366*
LIHC	TCGA-FV-A496-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577636	57577636	Nonsense_Mutation	G	T	p.G825*
LIHC	TCGA-FV-A4ZQ-01	EXOC5	ENST00000340918.7	chr14	57710996:57711077:57713428:57713576:57714335:57714361,57706312:57706377:57713428:57713576:57714335:57714361,	57713429	57713576	57713485	57713485	Nonsense_Mutation	G	A	p.Q72*
LIHC	TCGA-FV-A4ZQ-01	EXOC5	ENST00000555148.1	chr14	57710996:57711077:57713428:57713545:57714335:57714361,	57713429	57713545	57713485	57713485	Nonsense_Mutation	G	A	p.Q72*
LIHC	TCGA-G3-A25S-01	RHCG	ENST00000560081.1,ENST00000544600.1,ENST00000558184.1,ENST00000268122.4	chr15	90022552:90022719:90023491:90023639:90026297:90026448,	90023492	90023639	90023512	90023512	Nonsense_Mutation	G	T	p.S217*
LIHC	TCGA-G3-A25S-01	AGPAT3	ENST00000479117.1,ENST00000398058.1,ENST00000398063.2,ENST00000291572.8,ENST00000327505.2,ENST00000467358.1,ENST00000484865.1,ENST00000398061.1,ENST00000546158.1	chr21	45391283:45391371:45397926:45398002:45400869:45401068,	45397927	45398002	45397993	45397993	Nonsense_Mutation	C	G	p.Y278*
LIHC	TCGA-G3-A25S-01	RFX3	ENST00000358730.2,ENST00000382004.3,ENST00000449190.1,ENST00000302303.1,ENST00000457373.1,ENST00000451859.1	chr9	3330316:3330517:3346666:3346764:3395471:3395588,	3346667	3346764	3346710	3346710	Nonsense_Mutation	G	A	p.Q58*
LIHC	TCGA-G3-A25S-01	PLD5	ENST00000442594.2,ENST00000366545.4	chr1	242428663:242428750:242451663:242451832:242511407:242511544,242428663:242428750:242451663:242451832:242511400:242511544,	242451664	242451832	242451667	242451667	Nonsense_Mutation	A	T	p.C72*
LIHC	TCGA-G3-A25T-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439874	52439874	Nonsense_Mutation	G	A	p.Q280*
LIHC	TCGA-G3-A25U-01	SLC22A3	ENST00000275300.2,ENST00000392145.1	chr6	160831760:160831878:160857811:160857909:160858028:160858243,	160857812	160857909	160857827	160857827	Nonsense_Mutation	G	T	p.E331*
LIHC	TCGA-G3-A25V-01	DDB2	ENST00000378603.3,ENST00000256996.4	chr11	47256123:47256223:47256307:47256485:47256820:47256963,	47256308	47256485	47256456	47256456	Nonsense_Mutation	C	A	p.S284*
LIHC	TCGA-G3-A25W-01	HESX1	ENST00000495160.2	chr3	57232816:57232980:57233789:57234056:57260323:57260549,	57233790	57234056	57233897	57233897	Nonsense_Mutation	G	T	p.S17*
LIHC	TCGA-G3-A25W-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918958	1918958	Nonsense_Mutation	C	T	p.Q122*
LIHC	TCGA-G3-A3CG-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087065	117087065	Nonsense_Mutation	T	A	p.K78*
LIHC	TCGA-G3-A3CG-01	MCMBP	ENST00000360003.3,ENST00000466047.1,ENST00000369077.3	chr10	121591523:121591612:121595051:121595216:121596407:121596541,	121595052	121595216	121595143	121595143	Nonsense_Mutation	G	C	p.S541*
LIHC	TCGA-G3-A3CH-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357553	50357553	Nonsense_Mutation	A	T	p.L463*
LIHC	TCGA-G3-A3CK-01	PI4KB	ENST00000368874.4,ENST00000489223.2,ENST00000368872.1	chr1	151278739:151278839:151280049:151280277:151288048:151288148,	151280050	151280277	151280253	151280253	Nonsense_Mutation	C	A	p.E339*
LIHC	TCGA-G3-A3CK-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000468939.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58140517:58140655:58141686:58141802:58145280:58145413,	58141687	58141802	58141694	58141694	Nonsense_Mutation	C	G	p.Y2260*
LIHC	TCGA-G3-A3CK-01	ELL2	ENST00000513343.1	chr5	95236396:95236484:95236659:95236784:95242226:95242486,95236396:95236484:95236659:95236784:95278705:95278717,	95236660	95236784	95236730	95236730	Nonsense_Mutation	T	A	p.K266*
LIHC	TCGA-G3-A5SI-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50717283:50717440:50718058:50718205:50718433:50718500,	50718059	50718205	50718110	50718110	Nonsense_Mutation	G	T	p.Y1446*
LIHC	TCGA-G3-A5SI-01	NFX1	ENST00000379521.4,ENST00000318524.6	chr9	33290542:33290595:33294417:33295425:33301260:33301419,	33294418	33295425	33295194	33295194	Nonsense_Mutation	C	T	p.R268*
LIHC	TCGA-G3-A5SI-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56831809:56832025:56835228:56835294:56837435:56837574,	56835229	56835294	56835289	56835289	Nonsense_Mutation	C	T	p.Q369*
LIHC	TCGA-G3-A5SJ-01	CCDC138	ENST00000295124.4,ENST00000412964.2	chr2	109404487:109404545:109405307:109405422:109408130:109408258,	109405308	109405422	109405347	109405347	Nonsense_Mutation	C	A	p.S64*
LIHC	TCGA-G3-A5SL-01	C7orf26	ENST00000359073.5	chr7	6629774:6630106:6631333:6631498:6634065:6634231,	6631334	6631498	6631388	6631388	Nonsense_Mutation	C	T	p.Q102*
LIHC	TCGA-G3-A5SM-01	ITPK1	ENST00000557309.1,ENST00000267615.6,ENST00000556603.2,ENST00000555553.1,ENST00000553452.1,ENST00000354313.3	chr14	93460224:93460342:93542939:93542964:93581413:93581529,93483020:93483146:93542939:93542964:93581413:93581529,	93542940	93542964	93542960	93542960	Nonsense_Mutation	G	A	p.R34*
LIHC	TCGA-G3-A7M5-01	SLC44A5	ENST00000370859.3,ENST00000370855.5,ENST00000469525.1	chr1	75708604:75708696:75716894:75716979:75740642:75740727,	75716895	75716979	75716965	75716965	Nonsense_Mutation	A	T	p.L92*
LIHC	TCGA-G3-A7M5-01	DYNAP	ENST00000321600.1	chr18	52258445:52258570:52262169:52262334:52265043:52265910,	52262170	52262334	52262216	52262216	Nonsense_Mutation	G	A	p.W61*
LIHC	TCGA-G3-A7M6-01	FSTL5	ENST00000536695.1,ENST00000306100.5,ENST00000379164.4	chr4	162421167:162421286:162431549:162431576:162459317:162459452,	162431550	162431576	162431553	162431553	Nonsense_Mutation	C	A	p.E446*
LIHC	TCGA-G3-A7M7-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144881429:144881622:144882445:144882881:144886096:144886329,	144882446	144882881	144882490	144882490	Nonsense_Mutation	G	A	p.Q1314*
LIHC	TCGA-G3-A7M8-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532454	3532454	Nonsense_Mutation	C	T	p.Q350*
LIHC	TCGA-HP-A5N0-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832874	24832874	Nonsense_Mutation	G	T	p.E1242*
LIHC	TCGA-K7-A5RF-01	FGR	ENST00000374005.3,ENST00000374004.1,ENST00000399173.1,ENST00000374003.3,ENST00000457296.1	chr1	27943367:27943517:27943703:27943807:27948069:27948168,	27943704	27943807	27943782	27943782	Nonsense_Mutation	T	A	p.K152*
LIHC	TCGA-K7-A5RG-01	HACL1	ENST00000456194.2,ENST00000435217.2,ENST00000422591.1,ENST00000383779.4,ENST00000321169.5,ENST00000451445.2	chr3	15609938:15610093:15613174:15613276:15614665:15614749,	15613175	15613276	15613198	15613198	Nonsense_Mutation	T	A	p.K358*
LIHC	TCGA-K7-A6G5-01	COQ6	ENST00000556588.1,ENST00000334571.2,ENST00000556299.1,ENST00000394026.4,ENST00000238709.4	chr14	74428165:74428273:74428439:74428606:74429672:74429808,	74428440	74428606	74428466	74428466	Nonsense_Mutation	G	T	p.E413*
LIHC	TCGA-K7-A6G5-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2	chr20	9440281:9440457:9449217:9449319:9453436:9453494,	9449218	9449319	9449315	9449315	Nonsense_Mutation	G	T	p.E1104*
LIHC	TCGA-KR-A7K0-01	CES2	ENST00000564420.1,ENST00000417689.1	chr16	66976007:66976152:66976550:66976640:66977201:66977274,	66976551	66976640	66976600	66976600	Nonsense_Mutation	G	A	p.W508*
LIHC	TCGA-KR-A7K0-01	CES2	ENST00000317091.4,ENST00000568470.1	chr16	66976007:66976152:66976550:66976688:66977201:66977274,	66976551	66976688	66976600	66976600	Nonsense_Mutation	G	A	p.W508*
LIHC	TCGA-KR-A7K2-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
LIHC	TCGA-LG-A6GG-01	SLC1A6	ENST00000600144.1,ENST00000221742.3,ENST00000430939.2	chr19	15061006:15061202:15063739:15063874:15064946:15065141,	15063740	15063874	15063777	15063777	Nonsense_Mutation	C	A	p.E424*
LIHC	TCGA-LG-A6GG-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99365249:99365595:99374352:99374936:99375580:99375698,	99374353	99374936	99374696	99374696	Nonsense_Mutation	C	A	p.E57*
LIHC	TCGA-MI-A75E-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28*
LIHC	TCGA-MI-A75G-01	SFT2D2	ENST00000271375.4,ENST00000471981.1	chr1	168201071:168201157:168204338:168204420:168205826:168205862,	168204339	168204420	168204373	168204373	Nonsense_Mutation	A	T	p.K91*
LIHC	TCGA-MI-A75G-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53289511:53289691:53296898:53297009:53301205:53301402,	53296899	53297009	53296958	53296958	Nonsense_Mutation	G	A	p.W1423*
LIHC	TCGA-MI-A75H-01	DIP2A	ENST00000400274.1,ENST00000427143.2,ENST00000417564.2,ENST00000318711.7	chr21	47969683:47969798:47970455:47970657:47971546:47971656,	47970456	47970657	47970552	47970552	Nonsense_Mutation	G	T	p.E913*
LIHC	TCGA-MI-A75H-01	STRADB	ENST00000498648.1,ENST00000194530.3,ENST00000392249.2,ENST00000458269.2,ENST00000468123.1	chr2	202340393:202340465:202342341:202342513:202342809:202342836,	202342342	202342513	202342489	202342489	Nonsense_Mutation	G	A	p.W232*
LIHC	TCGA-MI-A75H-01	MLLT1	ENST00000252674.7	chr19	6222131:6222695:6226987:6227113:6230580:6230724,	6226988	6227113	6226990	6226990	Nonsense_Mutation	T	A	p.K182*
LIHC	TCGA-MI-A75I-01	DEDD2	ENST00000596251.1,ENST00000595337.1,ENST00000593804.1	chr19	42703944:42703981:42713851:42713992:42719284:42719404,	42713852	42713992	42713936	42713936	Nonsense_Mutation	T	A	p.R169*
LIHC	TCGA-MI-A75I-01	TM6SF1	ENST00000379386.4,ENST00000379384.5,ENST00000322019.9	chr15	83793423:83793528:83795506:83795599:83796109:83796229,	83795507	83795599	83795555	83795555	Nonsense_Mutation	C	T	p.Q253*
LIHC	TCGA-NI-A4U2-01	CTSK	ENST00000480670.1	chr1	150776516:150776715:150778336:150778492:150779161:150779244,	150778337	150778492	150778408	150778408	Nonsense_Mutation	C	A	p.E110*
LIHC	TCGA-RC-A6M3-01	SGCZ	ENST00000382080.1	chr8	14095100:14095188:14181611:14181713:14412240:14412435,	14181612	14181713	14181674	14181674	Nonsense_Mutation	G	A	p.R92*
LIHC	TCGA-RC-A6M4-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005471	150005471	Nonsense_Mutation	T	A	p.R252*
LIHC	TCGA-RC-A6M4-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670102	186670102	Nonsense_Mutation	G	T	p.E5446*
LIHC	TCGA-RC-A6M6-01	EMP1	ENST00000544053.1	chr12	13349719:13349806:13366412:13366509:13366614:13366755,	13366413	13366509	13366481	13366481	Nonsense_Mutation	C	A	p.C49*
LIHC	TCGA-RC-A6M6-01	CYP3A43	ENST00000312017.5,ENST00000222382.5,ENST00000354829.2	chr7	99445788:99445877:99447168:99447317:99453213:99453341,	99447169	99447317	99447235	99447235	Nonsense_Mutation	C	T	p.Q59*
LIHC	TCGA-RC-A6M6-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577064	7577064	Nonsense_Mutation	T	A	p.K292*
LIHC	TCGA-RC-A6M6-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128036748:128036951:128038022:128038207:128044278:128044593,	128038023	128038207	128038082	128038082	Nonsense_Mutation	C	A	p.E426*
LIHC	TCGA-RC-A7SF-01	EGF	ENST00000509996.1	chr4	110920834:110921002:110925660:110925778:110929307:110929386,110920834:110921002:110925660:110925778:110932357:110932464,	110925661	110925778	110925746	110925746	Nonsense_Mutation	G	T	p.E1087*
LIHC	TCGA-UB-A7MB-01	LHCGR	ENST00000602369.1	chr2	48921379:48921443:48925753:48925914:48936086:48936161,	48925754	48925914	48925836	48925836	Nonsense_Mutation	T	A	p.R262*
LIHC	TCGA-UB-A7MB-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925836	48925836	Nonsense_Mutation	T	A	p.R262*
LIHC	TCGA-UB-A7MB-01	CEACAM6	ENST00000199764.6	chr19	42265156:42265435:42265876:42266131:42270090:42270203,	42265877	42266131	42265920	42265920	Nonsense_Mutation	C	G	p.Y249*
LIHC	TCGA-UB-A7MB-01	FBXO27	ENST00000509137.2,ENST00000594770.1,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39516158:39516194:39517509:39517645:39521668:39521764,	39517510	39517645	39517611	39517611	Nonsense_Mutation	T	A	p.R203*
LIHC	TCGA-UB-A7MB-01	HTR7	ENST00000336152.3	chr10	92500579:92502285:92503349:92503447:92508595:92509351,	92503350	92503447	92503355	92503355	Nonsense_Mutation	A	T	p.L463*
LIHC	TCGA-UB-A7MB-01	KIF21A	ENST00000544797.2,ENST00000546817.1,ENST00000552961.1,ENST00000361418.5,ENST00000547108.1,ENST00000395670.3,ENST00000361961.3	chr12	39726838:39726909:39727013:39727082:39730897:39731005,	39727014	39727082	39727052	39727052	Nonsense_Mutation	T	A	p.R817*
LIHC	TCGA-UB-A7MB-01	ADCY4	ENST00000310677.4,ENST00000545213.1,ENST00000554781.1,ENST00000554577.1,ENST00000554068.2,ENST00000418030.2	chr14	24791829:24791914:24792109:24792294:24792549:24792660,	24792110	24792294	24792119	24792119	Nonsense_Mutation	A	T	p.L778*
LIHC	TCGA-UB-A7MB-01	CNBP	ENST00000500450.2	chr3	128890288:128890381:128890497:128890614:128902618:128902707,128890288:128890351:128890497:128890614:128902618:128902707,	128890498	128890614	128890513	128890513	Nonsense_Mutation	T	A	p.R30*
LIHC	TCGA-UB-A7MB-01	CNBP	ENST00000504813.1	chr3	128890288:128890381:128890476:128890614:128902618:128902707,128890288:128890351:128890476:128890614:128902618:128902707,	128890477	128890614	128890513	128890513	Nonsense_Mutation	T	A	p.R30*
LIHC	TCGA-UB-A7MB-01	CNBP	ENST00000512338.1	chr3	128890288:128890381:128890494:128890614:128902618:128902707,	128890495	128890614	128890513	128890513	Nonsense_Mutation	T	A	p.R30*
LIHC	TCGA-UB-A7MB-01	PTH2R	ENST00000413482.1,ENST00000272847.2	chr2	209324619:209324686:209345794:209345889:209353736:209353875,	209345795	209345889	209345825	209345825	Nonsense_Mutation	A	T	p.R338*
LIHC	TCGA-UB-A7MB-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938245	76938245	Nonsense_Mutation	T	A	p.R835*
LIHC	TCGA-UB-A7ME-01	RAB3GAP1	ENST00000539493.1,ENST00000264158.8,ENST00000442034.1,ENST00000487003.1	chr2	135872785:135872951:135878388:135878488:135881734:135881816,	135878389	135878488	135878431	135878431	Nonsense_Mutation	C	T	p.R231*
LIHC	TCGA-UB-A7MF-01	DISC1	ENST00000366633.3,ENST00000366632.2,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000422590.2,ENST00000602713.1,ENST00000602822.1,ENST00000366637.3	chr1	231906580:231906816:231930987:231931042:231935853:231935956,	231930988	231931042	231931028	231931028	Nonsense_Mutation	G	T	p.E559*
LIHC	TCGA-UB-A7MF-01	EIF5A	ENST00000336458.8,ENST00000572815.1	chr17	7211292:7211432:7212933:7213119:7214336:7214441,7210949:7211071:7212933:7213119:7214336:7214441,	7212934	7213119	7212998	7212998	Nonsense_Mutation	C	G	p.S15*
LIHC	TCGA-UB-A7MF-01	EIF5A	ENST00000573542.1	chr17	7210949:7211071:7212915:7213119:7214336:7214441,	7212916	7213119	7212998	7212998	Nonsense_Mutation	C	G	p.S15*
LUAD	TCGA-05-4244-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3,ENST00000497100.1	chrX	53228158:53228340:53230731:53230926:53231035:53231155,	53230732	53230926	53230770	53230770	Nonsense_Mutation	G	A	p.Q608*
LUAD	TCGA-05-4244-01	ABAT	ENST00000425191.2,ENST00000567812.1,ENST00000396600.2,ENST00000565671.1,ENST00000268251.8,ENST00000569156.1,ENST00000566590.1	chr16	8841964:8841994:8844278:8844396:8851613:8851661,	8844279	8844396	8844285	8844285	Nonsense_Mutation	G	T	p.E69*
LUAD	TCGA-05-4244-01	GLP2R	ENST00000262441.5,ENST00000574745.1	chr17	9783694:9783833:9791248:9791290:9792686:9793351,	9791249	9791290	9791285	9791285	Nonsense_Mutation	G	T	p.G441*
LUAD	TCGA-05-4244-01	PRPF38A	ENST00000257181.9	chr1	52876786:52876872:52878185:52878296:52879550:52879663,	52878186	52878296	52878240	52878240	Nonsense_Mutation	G	T	p.E185*
LUAD	TCGA-05-4249-01	ARMC3	ENST00000484642.1,ENST00000376528.4,ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23257234:23257418:23270268:23270421:23270523:23270537,	23270269	23270421	23270392	23270392	Nonsense_Mutation	C	A	p.S347*
LUAD	TCGA-05-4249-01	TSSK4	ENST00000287913.6,ENST00000556621.1	chr14	24675714:24675929:24676351:24676715:24677169:24677454,	24676352	24676715	24676508	24676508	Nonsense_Mutation	T	A	p.C209*
LUAD	TCGA-05-4250-01	SETD1A	ENST00000262519.8,ENST00000452917.1	chr16	30972587:30972858:30974753:30974875:30975414:30975516,	30974754	30974875	30974843	30974843	Nonsense_Mutation	A	T	p.K203*
LUAD	TCGA-05-4250-01	TARS2	ENST00000369064.3,ENST00000369051.3,ENST00000606933.1,ENST00000369054.2,ENST00000467982.2	chr1	150476810:150476911:150477107:150477209:150477381:150477454,	150477108	150477209	150477145	150477145	Nonsense_Mutation	C	T	p.R586*
LUAD	TCGA-05-4382-01	SLC7A1	ENST00000380752.5	chr13	30106960:30107119:30109955:30110339:30127897:30127997,	30109956	30110339	30110070	30110070	Nonsense_Mutation	C	A	p.E86*
LUAD	TCGA-05-4382-01	MED27	ENST00000357028.2,ENST00000292035.5	chr9	134814767:134814861:134889723:134889854:134952828:134952973,	134889724	134889854	134889752	134889752	Nonsense_Mutation	G	A	p.Q151*
LUAD	TCGA-05-4382-01	INTS4	ENST00000534064.1,ENST00000433818.2,ENST00000529807.1	chr11	77669791:77669880:77671386:77671437:77671998:77672184,	77671387	77671437	77671419	77671419	Nonsense_Mutation	C	A	p.G226*
LUAD	TCGA-05-4382-01	EBF3	ENST00000355311.5,ENST00000368648.3	chr10	131676031:131676113:131755521:131755590:131757197:131757271,	131755522	131755590	131755543	131755543	Nonsense_Mutation	G	C	p.S178*
LUAD	TCGA-05-4382-01	BTN2A2	ENST00000483410.1,ENST00000352867.2,ENST00000467485.1	chr6	26383370:26383409:26388240:26388522:26390232:26390365,26385370:26385590:26388240:26388522:26390232:26390365,26384019:26384143:26388240:26388522:26390232:26390365,	26388241	26388522	26388252	26388252	Nonsense_Mutation	A	T	p.K152*
LUAD	TCGA-05-4382-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235950023	235950023	Nonsense_Mutation	G	T	p.E204*
LUAD	TCGA-05-4382-01	TRPM1	ENST00000558768.1	chr15	31354781:31354905:31355338:31355495:31358278:31358450,	31355339	31355495	31355409	31355409	Nonsense_Mutation	C	A	p.E310*
LUAD	TCGA-05-4382-01	TRPM1	ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31354781:31354905:31355320:31355495:31358278:31358450,	31355321	31355495	31355409	31355409	Nonsense_Mutation	C	A	p.E310*
LUAD	TCGA-05-4382-01	TRPM1	ENST00000560658.1,ENST00000560801.1	chr15	31354781:31354905:31355290:31355495:31358278:31358450,	31355291	31355495	31355409	31355409	Nonsense_Mutation	C	A	p.E310*
LUAD	TCGA-05-4382-01	MVP	ENST00000570234.1,ENST00000563915.1,ENST00000357402.5,ENST00000395353.1	chr16	29841835:29841995:29842198:29842394:29845053:29845071,	29842199	29842394	29842281	29842281	Nonsense_Mutation	C	T	p.Q70*
LUAD	TCGA-05-4382-01	ANKMY2	ENST00000453623.1,ENST00000306999.2,ENST00000447802.1	chr7	16664666:16664706:16666664:16666803:16676015:16676080,	16666665	16666803	16666731	16666731	Nonsense_Mutation	C	A	p.G69*
LUAD	TCGA-05-4382-01	PRAME	ENST00000406503.1	chr22	22893273:22893511:22899231:22899506:22899964:22900000,	22899232	22899506	22899246	22899246	Nonsense_Mutation	G	A	p.R3*
LUAD	TCGA-05-4382-01	PRAME	ENST00000439106.1	chr22	22893273:22893511:22899231:22899397:22899964:22900000,	22899232	22899397	22899246	22899246	Nonsense_Mutation	G	A	p.R3*
LUAD	TCGA-05-4382-01	PRAME	ENST00000398743.2,ENST00000420709.1,ENST00000403441.1,ENST00000398741.1	chr22	22893273:22893511:22899231:22899350:22899964:22900000,	22899232	22899350	22899246	22899246	Nonsense_Mutation	G	A	p.R3*
LUAD	TCGA-05-4382-01	PRAME	ENST00000405655.3,ENST00000402697.1	chr22	22893273:22893511:22899231:22899329:22899964:22900000,	22899232	22899329	22899246	22899246	Nonsense_Mutation	G	A	p.R3*
LUAD	TCGA-05-4382-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807008	22807008	Nonsense_Mutation	C	A	p.E292*
LUAD	TCGA-05-4382-01	PHLPP1	ENST00000400316.4,ENST00000497351.1,ENST00000262719.5	chr18	60497267:60497464:60506016:60506142:60527667:60527746,	60506017	60506142	60506077	60506077	Nonsense_Mutation	C	T	p.Q100*
LUAD	TCGA-05-4382-01	FBLN1	ENST00000476366.1	chr22	45939280:45939406:45942964:45943084:45944492:45944507,45939280:45939406:45942964:45943084:45946371:45946495,	45942965	45943084	45943050	45943050	Nonsense_Mutation	C	A	p.Y469*
LUAD	TCGA-05-4382-01	PMS1	ENST00000441310.2,ENST00000421722.1,ENST00000409985.1,ENST00000450931.1,ENST00000424766.1,ENST00000374826.4,ENST00000409823.3,ENST00000447232.2,ENST00000424059.1	chr2	190656535:190656667:190660494:190660677:190670377:190670480,	190660495	190660677	190660675	190660675	Nonsense_Mutation	G	T	p.E105*
LUAD	TCGA-05-4382-01	PHLPP2	ENST00000567016.1,ENST00000568954.1,ENST00000356272.3,ENST00000360429.3,ENST00000568004.1	chr16	71692555:71692718:71697801:71698002:71701080:71701236,	71697802	71698002	71697944	71697944	Nonsense_Mutation	C	A	p.G615*
LUAD	TCGA-05-4382-01	UBA2	ENST00000586313.1,ENST00000246548.4,ENST00000592791.1,ENST00000439527.2	chr19	34945348:34945461:34951374:34951471:34954930:34955024,34949673:34949829:34951374:34951471:34954930:34955024,	34951375	34951471	34951384	34951384	Nonsense_Mutation	G	T	p.E375*
LUAD	TCGA-05-4382-01	GPR137B	ENST00000419162.1	chr1	236332005:236332055:236341713:236341936:236343178:236343328,236306067:236306336:236341713:236341936:236343178:236343328,	236341714	236341936	236341796	236341796	Nonsense_Mutation	G	T	p.G183*
LUAD	TCGA-05-4382-01	DSC2	ENST00000251081.6,ENST00000280904.6	chr18	28660061:28660318:28662203:28662389:28662891:28663026,	28662204	28662389	28662236	28662236	Nonsense_Mutation	T	A	p.K411*
LUAD	TCGA-05-4382-01	ITSN1	ENST00000399367.3,ENST00000381291.4,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35191544:35191627:35199121:35199167:35201927:35201990,35195790:35195957:35199121:35199167:35201927:35201990,	35199122	35199167	35199148	35199148	Nonsense_Mutation	G	T	p.E1010*
LUAD	TCGA-05-4382-01	MMP2	ENST00000570283.1	chr16	55523562:55523736:55525712:55525868:55527069:55527205,55522573:55522628:55525712:55525868:55527069:55527205,	55525713	55525868	55525859	55525859	Nonsense_Mutation	G	T	p.E443*
LUAD	TCGA-05-4382-01	AP3B2	ENST00000535359.1,ENST00000261722.3,ENST00000535348.1,ENST00000543938.1	chr15	83332552:83332727:83333118:83333242:83333586:83333695,	83333119	83333242	83333186	83333186	Nonsense_Mutation	C	A	p.E713*
LUAD	TCGA-05-4382-01	GALNT18	ENST00000227756.4	chr11	11292422:11292837:11314575:11314740:11348632:11348728,	11314576	11314740	11314629	11314629	Nonsense_Mutation	C	A	p.E542*
LUAD	TCGA-05-4382-01	EPHB1	ENST00000493838.1,ENST00000398015.3	chr3	134911417:134911665:134920315:134920531:134959989:134960139,	134920316	134920531	134920489	134920489	Nonsense_Mutation	C	G	p.Y768*
LUAD	TCGA-05-4382-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000380550.3,ENST00000340096.6	chrX	13780462:13780563:13785245:13785403:13786172:13786343,13781869:13781974:13785245:13785403:13786172:13786343,	13785246	13785403	13785314	13785314	Nonsense_Mutation	C	T	p.R750*
LUAD	TCGA-05-4382-01	RALYL	ENST00000518566.1,ENST00000522455.1,ENST00000521695.1,ENST00000517638.1,ENST00000523850.1,ENST00000521268.1	chr8	85785518:85785632:85799838:85800011:85833128:85833717,	85799839	85800011	85799896	85799896	Nonsense_Mutation	C	A	p.S248*
LUAD	TCGA-05-4382-01	COL6A3	ENST00000347401.3	chr2	238296224:238296827:238303229:238303847:238305369:238305405,238289779:238290142:238303229:238303847:238305369:238305460,	238303230	238303847	238303368	238303368	Nonsense_Mutation	C	A	p.E191*
LUAD	TCGA-05-4382-01	SLC11A2	ENST00000262052.5,ENST00000547688.1,ENST00000262051.7,ENST00000541174.2,ENST00000545993.2,ENST00000394904.3,ENST00000546636.1,ENST00000547198.1,ENST00000550061.1,ENST00000546743.1	chr12	51389466:51389570:51390599:51390755:51392956:51393024,	51390600	51390755	51390650	51390650	Nonsense_Mutation	C	A	p.G290*
LUAD	TCGA-05-4382-01	MED12L	ENST00000488092.1	chr3	151112443:151112655:151134099:151134210:151148086:151148168,	151134100	151134210	151134202	151134202	Nonsense_Mutation	C	T	p.Q2099*
LUAD	TCGA-05-4382-01	ABCC12	ENST00000534418.1,ENST00000528693.1,ENST00000448542.1,ENST00000532494.1,ENST00000529504.1,ENST00000311303.3,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48158123:48158195:48162369:48162648:48164698:48164806,	48162370	48162648	48162469	48162469	Nonsense_Mutation	G	T	p.Y472*
LUAD	TCGA-05-4384-01	TM2D3	ENST00000559107.1,ENST00000559024.1,ENST00000333202.3	chr15	102190272:102190364:102191898:102191976:102192473:102192570,	102191899	102191976	102191956	102191956	Nonsense_Mutation	G	A	p.Q38*
LUAD	TCGA-05-4389-01	SORBS1	ENST00000361941.3,ENST00000393949.1,ENST00000371249.2,ENST00000371246.2,ENST00000277982.5,ENST00000371247.2,ENST00000354106.3,ENST00000371227.4	chr10	97170389:97170534:97174250:97174619:97175225:97175452,97170389:97170534:97174250:97174619:97181717:97181830,	97174251	97174619	97174268	97174268	Nonsense_Mutation	C	A	p.G265*
LUAD	TCGA-05-4389-01	SORBS1	ENST00000353505.5,ENST00000371245.3	chr10	97170389:97170534:97174250:97174412:97181717:97181830,	97174251	97174412	97174268	97174268	Nonsense_Mutation	C	A	p.G265*
LUAD	TCGA-05-4389-01	WWOX	ENST00000408984.3,ENST00000566780.1,ENST00000562639.1,ENST00000569332.1	chr16	78420756:78420845:78458766:78458952:78466384:78466500,	78458767	78458952	78458910	78458910	Nonsense_Mutation	C	G	p.S250*
LUAD	TCGA-05-4390-01	TMTC1	ENST00000539277.1,ENST00000256062.5	chr12	29813736:29813818:29904598:29904805:29908641:29908818,29786079:29786269:29904598:29904805:29908641:29908818,	29904599	29904805	29904683	29904683	Nonsense_Mutation	C	T	p.W177*
LUAD	TCGA-05-4390-01	ZWILCH	ENST00000446801.2,ENST00000564179.1,ENST00000307897.5,ENST00000535141.2,ENST00000565627.1	chr15	66807863:66807982:66811216:66811416:66812927:66812995,	66811217	66811416	66811350	66811350	Nonsense_Mutation	G	T	p.G152*
LUAD	TCGA-05-4390-01	ATL1	ENST00000357032.3,ENST00000354525.4,ENST00000358385.6,ENST00000441560.2	chr14	51081096:51081229:51087316:51087444:51088560:51088617,	51087317	51087444	51087337	51087337	Nonsense_Mutation	A	T	p.K295*
LUAD	TCGA-05-4390-01	RAD54L2	ENST00000432863.1,ENST00000461680.1,ENST00000409535.2,ENST00000487093.1,ENST00000296477.3	chr3	51677890:51677990:51679039:51679245:51679606:51679779,	51679040	51679245	51679122	51679122	Nonsense_Mutation	C	T	p.Q845*
LUAD	TCGA-05-4390-01	LUZP2	ENST00000336930.6,ENST00000533227.1	chr11	24784791:24784854:24927536:24927599:24936021:24936084,	24927537	24927599	24927594	24927594	Nonsense_Mutation	G	T	p.E66*
LUAD	TCGA-05-4390-01	BTAF1	ENST00000265990.6,ENST00000544642.1	chr10	93773655:93773786:93776096:93776222:93778539:93778692,	93776097	93776222	93776187	93776187	Nonsense_Mutation	A	T	p.K1559*
LUAD	TCGA-05-4390-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000422669.1,ENST00000272273.5,ENST00000354476.3,ENST00000418533.2	chr2	33572433:33572577:33585663:33585846:33586495:33586582,	33585664	33585846	33585790	33585790	Nonsense_Mutation	C	A	p.S1376*
LUAD	TCGA-05-4390-01	LTBP1	ENST00000402934.1	chr2	33572433:33572577:33585669:33585846:33586495:33586582,	33585670	33585846	33585790	33585790	Nonsense_Mutation	C	A	p.S1376*
LUAD	TCGA-05-4395-01	SLC45A2	ENST00000296589.4,ENST00000342059.3	chr5	33944723:33944977:33947267:33947479:33951658:33951782,	33947268	33947479	33947450	33947450	Nonsense_Mutation	C	A	p.G396*
LUAD	TCGA-05-4395-01	MAP4	ENST00000426837.2,ENST00000360240.6,ENST00000395734.3	chr3	47956306:47956429:47957440:47958664:47960208:47960241,	47957441	47958664	47957470	47957470	Nonsense_Mutation	G	C	p.S633*
LUAD	TCGA-05-4396-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87080938:87081110:87082259:87082451:87083850:87083908,	87082260	87082451	87082321	87082321	Nonsense_Mutation	G	A	p.R159*
LUAD	TCGA-05-4396-01	TANGO6	ENST00000261778.1	chr16	68909126:68909193:68912020:68912183:68914450:68914533,	68912021	68912183	68912103	68912103	Nonsense_Mutation	C	G	p.S405*
LUAD	TCGA-05-4396-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53227671:53227819:53227945:53228070:53228158:53228340,	53227946	53228070	53227964	53227964	Nonsense_Mutation	C	A	p.E717*
LUAD	TCGA-05-4397-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000395187.2,ENST00000427635.2,ENST00000463478.1,ENST00000412272.2	chr10	69792575:69792626:69793721:69793943:69797849:69797926,	69793722	69793943	69793920	69793920	Nonsense_Mutation	G	A	p.Q163*
LUAD	TCGA-05-4397-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7635561:7635600:7635962:7636271:7637691:7637940,	7635963	7636271	7636212	7636212	Nonsense_Mutation	C	A	p.G947*
LUAD	TCGA-05-4397-01	NBAS	ENST00000429842.1,ENST00000281513.5	chr2	15542291:15542425:15555669:15555843:15557650:15557705,	15555670	15555843	15555687	15555687	Nonsense_Mutation	G	A	p.Q974*
LUAD	TCGA-05-4397-01	FBLN1	ENST00000348697.2,ENST00000340923.5,ENST00000327858.6,ENST00000442170.2,ENST00000262722.7,ENST00000402984.3	chr22	45942964:45943084:45944492:45944624:45946371:45946495,	45944493	45944624	45944567	45944567	Nonsense_Mutation	C	T	p.Q506*
LUAD	TCGA-05-4397-01	CDC16	ENST00000356221.3,ENST00000494766.1,ENST00000375312.3	chr13	115000555:115000607:115002119:115002174:115002276:115002371,115000555:115000607:115002119:115002174:115002273:115002371,	115002120	115002174	115002123	115002123	Nonsense_Mutation	C	T	p.Q18*
LUAD	TCGA-05-4397-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327238	188327238	Nonsense_Mutation	C	G	p.S240*
LUAD	TCGA-05-4397-01	MSRA	ENST00000317173.4,ENST00000441698.2,ENST00000382490.5,ENST00000528246.1	chr8	10159044:10159148:10177392:10177499:10285657:10285875,	10177393	10177499	10177494	10177494	Nonsense_Mutation	C	T	p.Q114*
LUAD	TCGA-05-4397-01	ADCY2	ENST00000537121.1,ENST00000338316.4	chr5	7724657:7724727:7727276:7727374:7743780:7743865,	7727277	7727374	7727279	7727279	Nonsense_Mutation	C	A	p.Y592*
LUAD	TCGA-05-4397-01	DLGAP4	ENST00000373913.3,ENST00000373907.2,ENST00000401952.2	chr20	34995551:34995678:35060048:35061119:35064511:35064753,	35060049	35061119	35060907	35060907	Nonsense_Mutation	G	T	p.E263*
LUAD	TCGA-05-4397-01	NR3C1	ENST00000503201.1	chr5	142693566:142693733:142779220:142780417:142783940:142784035,	142779221	142780417	142780341	142780341	Nonsense_Mutation	C	A	p.E22*
LUAD	TCGA-05-4397-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33235819	33235819	Nonsense_Mutation	C	T	p.Q347*
LUAD	TCGA-05-4397-01	WAC	ENST00000345541.6	chr10	28900702:28900851:28903495:28905291:28906585:28906713,	28903496	28905291	28905206	28905206	Nonsense_Mutation	C	G	p.S509*
LUAD	TCGA-05-4397-01	WAC	ENST00000375664.4,ENST00000354911.4,ENST00000375646.1,ENST00000347934.4,ENST00000439676.1	chr10	28903495:28903614:28905101:28905291:28906585:28906713,	28905102	28905291	28905206	28905206	Nonsense_Mutation	C	G	p.S509*
LUAD	TCGA-05-4398-01	KIF2C	ENST00000372222.3,ENST00000372224.4,ENST00000372217.1,ENST00000372218.4	chr1	45228216:45228330:45232497:45232621:45232768:45232880,	45232498	45232621	45232525	45232525	Nonsense_Mutation	G	T	p.E613*
LUAD	TCGA-05-4398-01	PTGS1	ENST00000373698.5,ENST00000223423.4,ENST00000362012.2,ENST00000540753.1	chr9	125140711:125140852:125141053:125141197:125143649:125143831,	125141054	125141197	125141116	125141116	Nonsense_Mutation	G	T	p.E139*
LUAD	TCGA-05-4398-01	SKA2	ENST00000437036.2	chr17	57201667:57201789:57208641:57208728:57232491:57232535,57196747:57196856:57208641:57208728:57229129:57229162,57196756:57196856:57208641:57208728:57232491:57232535,57196756:57196856:57208641:57208728:57232316:57232538,57189622:57189706:57208641:57208728:57232491:57232535,57189622:57189706:57208641:57208728:57232316:57232538,	57208642	57208728	57208721	57208721	Nonsense_Mutation	T	A	p.K46*
LUAD	TCGA-05-4398-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000389980.3	chr2	54850615:54850733:54851940:54852099:54853068:54853371,	54851941	54852099	54852019	54852019	Nonsense_Mutation	G	T	p.E408*
LUAD	TCGA-05-4398-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257770	158257770	Nonsense_Mutation	G	A	p.W572*
LUAD	TCGA-05-4398-01	CD84	ENST00000368051.3,ENST00000360056.3,ENST00000368054.3,ENST00000368048.3,ENST00000311224.4,ENST00000368047.3	chr1	160523684:160523936:160535193:160535535:160549181:160549263,	160535194	160535535	160535278	160535278	Nonsense_Mutation	C	A	p.E102*
LUAD	TCGA-05-4398-01	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1616833:1617151:1629697:1630051,1615912:1616245:1616833:1617151:1629697:1630054,	1616834	1617151	1616967	1616967	Nonsense_Mutation	G	T	p.Y172*
LUAD	TCGA-05-4398-01	SORBS3	ENST00000517535.1,ENST00000517962.1,ENST00000240123.7,ENST00000428103.1	chr8	22428456:22428734:22429230:22429334:22429852:22429959,	22429231	22429334	22429318	22429318	Nonsense_Mutation	C	T	p.Q611*
LUAD	TCGA-05-4402-01	DNAJB2	ENST00000463463.1,ENST00000425450.1,ENST00000392086.4,ENST00000336576.5	chr2	220146660:220146783:220147558:220147651:220147854:220147957,	220147559	220147651	220147600	220147600	Nonsense_Mutation	C	T	p.R132*
LUAD	TCGA-05-4402-01	SLC22A8	ENST00000535878.1,ENST00000545207.1,ENST00000336232.2,ENST00000430500.2	chr11	62760708:62760808:62760895:62761099:62761241:62761350,	62760896	62761099	62760896	62760896	Nonsense_Mutation	C	T	p.W510*
LUAD	TCGA-05-4402-01	SCRN3	ENST00000272732.6,ENST00000409673.3,ENST00000490927.1	chr2	175265717:175265917:175268830:175269043:175287612:175287775,	175268831	175269043	175268854	175268854	Nonsense_Mutation	C	T	p.Q189*
LUAD	TCGA-05-4402-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44913956:44914132:44914417:44914545:44914925:44914997,	44914418	44914545	44914530	44914530	Nonsense_Mutation	C	A	p.E778*
LUAD	TCGA-05-4403-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000429436.2	chr14	103932050:103932130:103932308:103932428:103932679:103932779,	103932309	103932428	103932328	103932328	Nonsense_Mutation	T	G	p.L266*
LUAD	TCGA-05-4403-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42264565:42264653:42265784:42265893:42271118:42271264,	42265785	42265893	42265860	42265860	Nonsense_Mutation	G	T	p.E363*
LUAD	TCGA-05-4405-01	COL1A2	ENST00000469732.1,ENST00000297268.6	chr7	94053647:94053755:94054428:94054536:94054921:94054975,	94054429	94054536	94054501	94054501	Nonsense_Mutation	G	T	p.G916*
LUAD	TCGA-05-4405-01	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000469607.1,ENST00000329066.4,ENST00000422464.1,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3,ENST00000346956.3	chr2	1497573:1497811:1499760:1499969:1500366:1500537,	1499761	1499969	1499813	1499813	Nonsense_Mutation	G	T	p.E687*
LUAD	TCGA-05-4405-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33964062	33964062	Nonsense_Mutation	C	A	p.G208*
LUAD	TCGA-05-4405-01	RAD51C	ENST00000461271.1,ENST00000425173.1,ENST00000487921.1,ENST00000583539.1,ENST00000337432.4,ENST00000413590.1,ENST00000475762.1	chr17	56772508:56772550:56774053:56774220:56780556:56780690,	56774054	56774220	56774181	56774181	Nonsense_Mutation	C	T	p.Q178*
LUAD	TCGA-05-4405-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377953	77377953	Nonsense_Mutation	G	A	p.Q1212*
LUAD	TCGA-05-4405-01	LRIG1	ENST00000383703.3,ENST00000273261.3,ENST00000475366.1,ENST00000498287.1	chr3	66467552:66467690:66501982:66502057:66512861:66512933,	66501983	66502057	66502041	66502041	Nonsense_Mutation	C	A	p.E103*
LUAD	TCGA-05-4405-01	HDAC6	ENST00000334136.5,ENST00000376619.2,ENST00000444343.2,ENST00000477528.1,ENST00000488543.1,ENST00000486227.1	chrX	48682081:48682195:48682331:48682478:48682575:48682704,	48682332	48682478	48682427	48682427	Nonsense_Mutation	T	A	p.C1133*
LUAD	TCGA-05-4405-01	NCAPG2	ENST00000449727.2,ENST00000409423.1,ENST00000275830.10,ENST00000409339.3,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3	chr7	158464205:158464358:158468168:158468348:158472651:158472777,	158468169	158468348	158468339	158468339	Nonsense_Mutation	C	A	p.E386*
LUAD	TCGA-05-4410-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5402280:5402456:5410005:5410995:5413685:5414112,	5410006	5410995	5410699	5410699	Nonsense_Mutation	C	A	p.E1176*
LUAD	TCGA-05-4410-01	NTNG1	ENST00000370061.3	chr1	107973371:107973539:107979286:107979421:108023232:108023462,107961201:107961267:107979286:107979421:108023232:108023462,	107979287	107979421	107979327	107979327	Nonsense_Mutation	T	A	p.C432*
LUAD	TCGA-05-4410-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	564863:564929:572519:572644:576756:576882,	572520	572644	572554	572554	Nonsense_Mutation	C	T	p.W470*
LUAD	TCGA-05-4410-01	SYNE2	ENST00000357395.3,ENST00000555612.1,ENST00000358025.3,ENST00000553289.1,ENST00000394768.2,ENST00000344113.4,ENST00000555002.1	chr14	64644075:64644201:64653141:64653297:64655267:64655426,	64653142	64653297	64653253	64653253	Nonsense_Mutation	C	T	p.Q2275*
LUAD	TCGA-05-4410-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135204107	135204107	Nonsense_Mutation	T	A	p.R960*
LUAD	TCGA-05-4410-01	GUSB	ENST00000304895.4,ENST00000447929.1,ENST00000466883.1,ENST00000345660.6,ENST00000421103.1,ENST00000430730.1	chr7	65425687:65426050:65429309:65429445:65432717:65432894,	65429310	65429445	65429376	65429376	Nonsense_Mutation	G	A	p.Q575*
LUAD	TCGA-05-4410-01	CABYR	ENST00000581397.1,ENST00000399496.3,ENST00000399499.1	chr18	21723323:21723377:21735664:21736006:21739435:21739626,	21735665	21736006	21735704	21735704	Nonsense_Mutation	T	A	p.L80*
LUAD	TCGA-05-4410-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21735704	21735704	Nonsense_Mutation	T	A	p.L80*
LUAD	TCGA-05-4410-01	PTPRG	ENST00000474889.1,ENST00000295874.10	chr3	61734551:61734656:61975298:61975478:61989022:61989171,	61975299	61975478	61975455	61975455	Nonsense_Mutation	G	A	p.W116*
LUAD	TCGA-05-4410-01	UBAP1	ENST00000540348.1,ENST00000297661.4,ENST00000545103.1,ENST00000536252.1,ENST00000543944.1,ENST00000359544.2	chr9	34241850:34242106:34249776:34249959:34250655:34250757,	34249777	34249959	34249796	34249796	Nonsense_Mutation	C	G	p.S368*
LUAD	TCGA-05-4410-01	COL9A1	ENST00000447041.2,ENST00000370499.4,ENST00000489611.1,ENST00000357250.6,ENST00000486080.1,ENST00000320755.7	chr6	70944262:70944296:70944496:70944643:70948956:70948989,	70944497	70944643	70944628	70944628	Nonsense_Mutation	C	A	p.E710*
LUAD	TCGA-05-4410-01	ZW10	ENST00000200135.3	chr11	113607341:113607544:113608293:113608425:113608985:113609116,	113608294	113608425	113608401	113608401	Nonsense_Mutation	C	A	p.G637*
LUAD	TCGA-05-4410-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113169032	113169032	Nonsense_Mutation	C	A	p.G2950*
LUAD	TCGA-05-4410-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000401921.1,ENST00000523867.1,ENST00000461159.2	chr7	18806728:18806778:18832967:18833075:18868783:18868839,	18832968	18833075	18832988	18832988	Nonsense_Mutation	G	A	p.W742*
LUAD	TCGA-05-4410-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93603571:93603740:93605179:93605347:93611776:93611966,	93605180	93605347	93605239	93605239	Nonsense_Mutation	C	A	p.E422*
LUAD	TCGA-05-4410-01	CDK14	ENST00000446224.1,ENST00000456689.1,ENST00000406263.1,ENST00000380050.3,ENST00000478540.1,ENST00000430760.1,ENST00000265741.3,ENST00000449528.1	chr7	90355880:90356126:90376995:90377090:90419887:90419929,	90376996	90377090	90377056	90377056	Nonsense_Mutation	G	T	p.G98*
LUAD	TCGA-05-4410-01	SCN4A	ENST00000435607.1,ENST00000578147.1	chr17	62024404:62024527:62025249:62025423:62025970:62026125,	62025250	62025423	62025346	62025346	Nonsense_Mutation	G	T	p.Y1074*
LUAD	TCGA-05-4410-01	ADAMTS12	ENST00000504830.1,ENST00000504582.1,ENST00000352040.3	chr5	33649658:33649802:33658288:33658438:33662020:33662145,	33658289	33658438	33658332	33658332	Nonsense_Mutation	C	A	p.G383*
LUAD	TCGA-05-4410-01	HNRNPDL	ENST00000502762.1,ENST00000602300.1,ENST00000295470.5,ENST00000507721.1,ENST00000514511.1	chr4	83347189:83347282:83347615:83347786:83348342:83348344,	83347616	83347786	83347646	83347646	Nonsense_Mutation	C	A	p.G388*
LUAD	TCGA-05-4417-01	VNN3	ENST00000414302.2	chr6	133046059:133046118:133047860:133048151:133049879:133050072,133046059:133046118:133047860:133048151:133055391:133055472,	133047861	133048151	133047925	133047925	Nonsense_Mutation	C	T	p.W254*
LUAD	TCGA-05-4417-01	VNN3	ENST00000519686.2,ENST00000392393.3	chr6	133046059:133046118:133047860:133047977:133055391:133055472,133046059:133046118:133047860:133047977:133049879:133050072,	133047861	133047977	133047925	133047925	Nonsense_Mutation	C	T	p.W254*
LUAD	TCGA-05-4417-01	TDO2	ENST00000536354.2	chr4	156830038:156830166:156831176:156831363:156832648:156832756,	156831177	156831363	156831356	156831356	Nonsense_Mutation	T	A	p.L204*
LUAD	TCGA-05-4417-01	TDO2	ENST00000512584.1	chr4	156830038:156830166:156831336:156831363:156832648:156832756,	156831337	156831363	156831356	156831356	Nonsense_Mutation	T	A	p.L204*
LUAD	TCGA-05-4417-01	SGMS1	ENST00000361781.2	chr10	52087037:52087082:52103251:52104105:52193235:52193316,	52103252	52104105	52103484	52103484	Nonsense_Mutation	C	A	p.E131*
LUAD	TCGA-05-4417-01	ABHD8	ENST00000247706.3	chr19	17402939:17403640:17405096:17405313:17405483:17405654,	17405097	17405313	17405099	17405099	Nonsense_Mutation	C	A	p.E383*
LUAD	TCGA-05-4418-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818476	214818476	Nonsense_Mutation	G	T	p.E1855*
LUAD	TCGA-05-4418-01	ARFIP2	ENST00000254584.2,ENST00000423813.2,ENST00000396777.3,ENST00000525235.1,ENST00000531037.1	chr11	6500088:6500189:6500369:6500488:6501201:6501298,	6500370	6500488	6500372	6500372	Nonsense_Mutation	T	A	p.K105*
LUAD	TCGA-05-4420-01	ARFIP1	ENST00000405727.2	chr4	153701260:153701378:153750776:153750878:153784757:153784866,153701144:153701243:153750776:153750878:153784757:153784866,	153750777	153750878	153750861	153750861	Nonsense_Mutation	G	T	p.E26*
LUAD	TCGA-05-4420-01	DCHS2	ENST00000357232.4	chr4	155160321:155160454:155161688:155161975:155163793:155163924,	155161689	155161975	155161691	155161691	Nonsense_Mutation	G	A	p.Q1998*
LUAD	TCGA-05-4420-01	RPL21	ENST00000326092.4,ENST00000272274.4,ENST00000311549.6,ENST00000483765.1,ENST00000319826.4,ENST00000485756.1	chr13	27829378:27829491:27830320:27830471:27830572:27830682,	27830321	27830471	27830439	27830439	Nonsense_Mutation	G	T	p.E121*
LUAD	TCGA-05-4420-01	MTM1	ENST00000370396.2	chrX	149767055:149767150:149783061:149783172:149787510:149787612,	149783062	149783172	149783137	149783137	Nonsense_Mutation	G	T	p.G103*
LUAD	TCGA-05-4420-01	ZNF236	ENST00000579322.1,ENST00000253159.8,ENST00000320610.9,ENST00000543926.2	chr18	74580640:74580819:74583656:74583781:74587447:74587472,	74583657	74583781	74583760	74583760	Nonsense_Mutation	C	T	p.R214*
LUAD	TCGA-05-4420-01	NCKAP5	ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133636420:133636489:133721292:133721442:133751724:133751812,	133721293	133721442	133721313	133721313	Nonsense_Mutation	C	A	p.E187*
LUAD	TCGA-05-4420-01	IL4R	ENST00000380922.3,ENST00000568746.1,ENST00000395762.2,ENST00000449195.1,ENST00000543915.2,ENST00000565696.1,ENST00000170630.2	chr16	27353441:27353580:27356189:27356341:27357787:27357939,	27356190	27356341	27356218	27356218	Nonsense_Mutation	G	T	p.G80*
LUAD	TCGA-05-4420-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107680	168107680	Nonsense_Mutation	G	T	p.E3260*
LUAD	TCGA-05-4422-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000402717.3,ENST00000404971.1	chr2	50280408:50280728:50282092:50282182:50318460:50318632,	50282093	50282182	50282123	50282123	Nonsense_Mutation	G	A	p.R1300*
LUAD	TCGA-05-4422-01	IDI1	ENST00000429642.1	chr10	1089240:1089333:1089938:1090111:1094203:1094337,	1089939	1090111	1089975	1089975	Nonsense_Mutation	T	A	p.K93*
LUAD	TCGA-05-4424-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778627	64778627	Nonsense_Mutation	C	T	p.R7*
LUAD	TCGA-05-4424-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76372213	76372213	Nonsense_Mutation	C	A	p.E142*
LUAD	TCGA-05-4424-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034444	47034444	Nonsense_Mutation	G	T	p.E177*
LUAD	TCGA-05-4424-01	NRDE2	ENST00000554464.1,ENST00000553409.1,ENST00000556189.1,ENST00000357904.3,ENST00000354366.3	chr14	90759040:90759216:90764603:90764724:90767582:90767716,	90764604	90764724	90764712	90764712	Nonsense_Mutation	C	A	p.E520*
LUAD	TCGA-05-4424-01	NDUFA8	ENST00000373768.3	chr9	124906336:124906657:124910390:124910556:124914523:124914687,	124910391	124910556	124910549	124910549	Nonsense_Mutation	T	A	p.K75*
LUAD	TCGA-05-4424-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292380	96292380	Nonsense_Mutation	C	A	p.E167*
LUAD	TCGA-05-4424-01	PHEX	ENST00000379374.4,ENST00000537599.1,ENST00000535894.1	chrX	22056586:22056655:22065167:22065329:22094505:22094592,	22065168	22065329	22065243	22065243	Nonsense_Mutation	G	A	p.W88*
LUAD	TCGA-05-4424-01	RPS13	ENST00000526895.1,ENST00000525828.1,ENST00000525634.1	chr11	17096643:17096744:17097000:17097170:17098714:17098793,	17097001	17097170	17097027	17097027	Nonsense_Mutation	G	A	p.R99*
LUAD	TCGA-05-4424-01	EPHA6	ENST00000389672.5,ENST00000502694.1,ENST00000514100.1,ENST00000508345.1,ENST00000442602.2	chr3	97251201:97251387:97311455:97311581:97329636:97329668,	97311456	97311581	97311551	97311551	Nonsense_Mutation	G	T	p.G828*
LUAD	TCGA-05-4424-01	PHLPP1	ENST00000400316.4,ENST00000497351.1,ENST00000262719.5	chr18	60497267:60497464:60506016:60506142:60527667:60527746,	60506017	60506142	60506065	60506065	Nonsense_Mutation	G	T	p.G96*
LUAD	TCGA-05-4426-01	IL17RE	ENST00000421412.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3,ENST00000383815.3,ENST00000434065.1	chr3	9949922:9949991:9950900:9950967:9952548:9952724,	9950901	9950967	9950949	9950949	Nonsense_Mutation	C	T	p.Q262*
LUAD	TCGA-05-4427-01	TMEM120B	ENST00000449592.2,ENST00000541467.1,ENST00000342607.6	chr12	122190034:122190129:122199554:122199644:122211326:122211419,122190034:122190129:122199554:122199644:122208812:122208878,	122199555	122199644	122199641	122199641	Nonsense_Mutation	C	G	p.S183*
LUAD	TCGA-05-4427-01	ZMIZ1	ENST00000334512.5	chr10	81064920:81064988:81065289:81065358:81065856:81066101,	81065290	81065358	81065336	81065336	Nonsense_Mutation	G	T	p.G801*
LUAD	TCGA-05-4427-01	CRIM1	ENST00000280527.2	chr2	36726361:36726490:36737125:36737282:36739415:36739537,	36737126	36737282	36737268	36737268	Nonsense_Mutation	T	A	p.C548*
LUAD	TCGA-05-4427-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463315	5463315	Nonsense_Mutation	C	T	p.W234*
LUAD	TCGA-05-4427-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56472827	56472827	Nonsense_Mutation	A	T	p.L2167*
LUAD	TCGA-05-4427-01	CCDC30	ENST00000342022.4,ENST00000509712.1,ENST00000340612.4,ENST00000428554.2,ENST00000471390.1	chr1	43011080:43011250:43021826:43022076:43031966:43032146,	43021827	43022076	43021930	43021930	Nonsense_Mutation	C	T	p.R177*
LUAD	TCGA-05-4427-01	REG1B	ENST00000305089.3,ENST00000479258.1	chr2	79313492:79313630:79313937:79314056:79314674:79314784,	79313938	79314056	79313967	79313967	Nonsense_Mutation	C	A	p.E52*
LUAD	TCGA-05-4427-01	TSHR	ENST00000555326.1	chr14	81534597:81534672:81554248:81554372:81557412:81557476,	81554249	81554372	81554321	81554321	Nonsense_Mutation	T	A	p.L114*
LUAD	TCGA-05-4427-01	TSHR	ENST00000298171.2,ENST00000554263.1,ENST00000541158.2,ENST00000554435.1,ENST00000342443.6	chr14	81534597:81534672:81554297:81554372:81557412:81557476,	81554298	81554372	81554321	81554321	Nonsense_Mutation	T	A	p.L114*
LUAD	TCGA-05-4427-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101659	168101659	Nonsense_Mutation	G	T	p.E1253*
LUAD	TCGA-05-4427-01	PDE3B	ENST00000282096.4,ENST00000455098.2	chr11	14865372:14865572:14880588:14880792:14882750:14882912,	14880589	14880792	14880790	14880790	Nonsense_Mutation	A	T	p.K908*
LUAD	TCGA-05-4427-01	ETNPPL	ENST00000509402.1	chr4	109677573:109677648:109680904:109681064:109681343:109681462,109677597:109677648:109680904:109681064:109683998:109684085,	109680905	109681064	109681047	109681047	Nonsense_Mutation	C	A	p.G65*
LUAD	TCGA-05-4430-01	SLC39A5	ENST00000454355.2,ENST00000266980.4	chr12	56628940:56629110:56629343:56629484:56630179:56630276,	56629344	56629484	56629470	56629470	Nonsense_Mutation	C	T	p.R311*
LUAD	TCGA-05-4430-01	TCHP	ENST00000549550.1,ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110346675:110346742:110348867:110349040:110350795:110350877,	110348868	110349040	110348913	110348913	Nonsense_Mutation	G	T	p.E309*
LUAD	TCGA-05-4432-01	ZNF85	ENST00000345030.6	chr19	21106206:21106209:21116829:21116956:21117754:21117853,21106206:21106209:21116829:21116956:21131549:21131597,	21116830	21116956	21116875	21116875	Nonsense_Mutation	G	T	p.E17*
LUAD	TCGA-05-4432-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131669876	131669876	Nonsense_Mutation	A	T	p.K145*
LUAD	TCGA-05-4432-01	TMEM107	ENST00000431792.2	chr17	8079074:8079175:8079276:8079344:8079517:8079634,8077488:8077590:8079276:8079344:8079517:8079634,	8079277	8079344	8079332	8079332	Nonsense_Mutation	G	A	p.Q34*
LUAD	TCGA-05-4432-01	SMYD5	ENST00000258100.4,ENST00000389501.4,ENST00000477038.1	chr2	73448303:73448362:73448953:73449058:73449882:73449945,	73448954	73449058	73449044	73449044	Nonsense_Mutation	G	T	p.G210*
LUAD	TCGA-05-4432-01	PLA2R1	ENST00000283243.7,ENST00000392771.1	chr2	160843666:160843869:160862162:160862332:160869773:160869886,	160862163	160862332	160862202	160862202	Nonsense_Mutation	C	A	p.E599*
LUAD	TCGA-05-4432-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
LUAD	TCGA-05-4432-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700627	149700627	Nonsense_Mutation	G	T	p.G526*
LUAD	TCGA-05-4432-01	ZC3H12C	ENST00000453089.2,ENST00000528673.1,ENST00000278590.3	chr11	110007387:110008139:110023643:110023783:110029980:110030215,	110023644	110023783	110023681	110023681	Nonsense_Mutation	A	T	p.K240*
LUAD	TCGA-05-4432-01	JMJD4	ENST00000480590.1,ENST00000366758.3,ENST00000438896.2	chr1	227921607:227921733:227922351:227922517:227922712:227922777,	227922352	227922517	227922419	227922419	Nonsense_Mutation	C	A	p.E167*
LUAD	TCGA-05-4433-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LUAD	TCGA-05-4434-01	NF2	ENST00000361676.4	chr22	30032739:30032865:30035078:30035201:30038190:30038274,29999987:30000101:30035078:30035201:30038190:30038274,	30035079	30035201	30035169	30035169	Nonsense_Mutation	C	T	p.Q111*
LUAD	TCGA-05-5420-01	FANCI	ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89807752:89807838:89811629:89811756:89816607:89816700,	89811630	89811756	89811676	89811676	Nonsense_Mutation	G	T	p.E268*
LUAD	TCGA-05-5420-01	SMARCA4	ENST00000590574.1,ENST00000344626.4,ENST00000589677.1,ENST00000429416.3,ENST00000358026.2,ENST00000450717.3,ENST00000591545.1,ENST00000541122.2,ENST00000413806.3,ENST00000444061.3	chr19	11098341:11098600:11099992:11100119:11101825:11101999,	11099993	11100119	11100015	11100015	Nonsense_Mutation	C	T	p.R381*
LUAD	TCGA-05-5420-01	PRSS22	ENST00000161006.3,ENST00000576381.1	chr16	2905670:2905852:2906082:2906254:2906822:2906849,	2906083	2906254	2906186	2906186	Nonsense_Mutation	C	A	p.E60*
LUAD	TCGA-05-5420-01	PRSS22	ENST00000571228.1	chr16	2905670:2905852:2906134:2906254:2906822:2906849,2903990:2904023:2906134:2906254:2906822:2906849,	2906135	2906254	2906186	2906186	Nonsense_Mutation	C	A	p.E60*
LUAD	TCGA-05-5423-01	STAU2	ENST00000521727.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521447.1	chr8	74529526:74529686:74585341:74585477:74600888:74601048,	74585342	74585477	74585457	74585457	Nonsense_Mutation	C	A	p.E67*
LUAD	TCGA-05-5423-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220300091:220300185:220307743:220307852:220310150:220310253,	220307744	220307852	220307776	220307776	Nonsense_Mutation	G	T	p.G552*
LUAD	TCGA-05-5423-01	DPYD	ENST00000370192.3	chr1	97771732:97771853:97839116:97839200:97847948:97848017,	97839117	97839200	97839179	97839179	Nonsense_Mutation	C	A	p.E666*
LUAD	TCGA-05-5425-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377884	77377884	Nonsense_Mutation	C	A	p.E1235*
LUAD	TCGA-05-5425-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579485	7579485	Nonsense_Mutation	C	A	p.E68*
LUAD	TCGA-05-5425-01	HAUS1	ENST00000588704.1,ENST00000585518.1,ENST00000282058.6,ENST00000593165.1,ENST00000589554.1,ENST00000591715.1,ENST00000586060.1	chr18	43704787:43704859:43705709:43705757:43708040:43708087,	43705710	43705757	43705725	43705725	Nonsense_Mutation	C	G	p.S120*
LUAD	TCGA-05-5425-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102031	168102031	Nonsense_Mutation	G	T	p.E1377*
LUAD	TCGA-05-5425-01	SLC17A3	ENST00000397060.4,ENST00000361703.6,ENST00000360657.3	chr6	25850275:25850405:25850686:25850848:25850986:25851105,	25850687	25850848	25850732	25850732	Nonsense_Mutation	G	C	p.Y316*
LUAD	TCGA-05-5425-01	KLHL6	ENST00000468734.1,ENST00000341319.3	chr3	183211866:183212069:183217377:183217615:183225846:183226296,	183217378	183217615	183217606	183217606	Nonsense_Mutation	C	A	p.E307*
LUAD	TCGA-05-5425-01	DNAH7	ENST00000312428.6	chr2	196750864:196750996:196752981:196753158:196753522:196753705,	196752982	196753158	196753131	196753131	Nonsense_Mutation	C	A	p.E1753*
LUAD	TCGA-05-5425-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781255	25781255	Nonsense_Mutation	C	A	p.E232*
LUAD	TCGA-05-5425-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2	chr20	33603810:33603942:33608992:33609159:33622925:33623094,	33608993	33609159	33608995	33608995	Nonsense_Mutation	G	A	p.Q406*
LUAD	TCGA-05-5425-01	TRPC4AP	ENST00000451813.2	chr20	33603810:33603942:33608992:33609135:33622925:33623094,	33608993	33609135	33608995	33608995	Nonsense_Mutation	G	A	p.Q406*
LUAD	TCGA-05-5428-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529494	219529494	Nonsense_Mutation	C	A	p.E257*
LUAD	TCGA-05-5428-01	PRSS16	ENST00000470870.1,ENST00000230582.3	chr6	27215673:27215827:27216625:27216725:27220586:27220728,27215673:27215827:27216625:27216725:27216878:27217008,	27216626	27216725	27216634	27216634	Nonsense_Mutation	G	A	p.W82*
LUAD	TCGA-05-5428-01	ATP7A	ENST00000341514.6,ENST00000350425.4,ENST00000343533.5	chrX	77298814:77298932:77300966:77301069:77301790:77305892,	77300967	77301069	77301004	77301004	Nonsense_Mutation	G	A	p.W1387*
LUAD	TCGA-05-5428-01	ARID4B	ENST00000366603.2,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3	chr1	235359345:235359430:235377083:235377341:235383107:235383283,	235377084	235377341	235377133	235377133	Nonsense_Mutation	C	A	p.E598*
LUAD	TCGA-05-5715-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088651	27088651	Nonsense_Mutation	C	T	p.Q754*
LUAD	TCGA-05-5715-01	EAF2	ENST00000273668.2,ENST00000490434.1	chr3	121575857:121576003:121591383:121591635:121605188:121605315,	121591384	121591635	121591540	121591540	Nonsense_Mutation	C	A	p.S214*
LUAD	TCGA-17-Z000-01	TRDN	ENST00000334268.4,ENST00000398178.3	chr6	123703262:123703292:123709666:123709696:123714768:123714822,	123709667	123709696	123709670	123709670	Nonsense_Mutation	C	A	p.E378*
LUAD	TCGA-17-Z000-01	RPS18	ENST00000474626.1	chr6	33243573:33243660:33243741:33244044:33244167:33244282,	33243742	33244044	33243778	33243778	Nonsense_Mutation	C	T	p.Q76*
LUAD	TCGA-17-Z000-01	RPS18	ENST00000490191.1,ENST00000474973.1,ENST00000439602.2,ENST00000476222.1,ENST00000496813.1	chr6	33243573:33243660:33243741:33243843:33243952:33244044,	33243742	33243843	33243778	33243778	Nonsense_Mutation	C	T	p.Q76*
LUAD	TCGA-17-Z000-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213414788	213414788	Nonsense_Mutation	C	T	p.Q657*
LUAD	TCGA-17-Z000-01	FNTA	ENST00000342116.4,ENST00000529687.1,ENST00000533336.1,ENST00000531266.1,ENST00000533383.1,ENST00000526755.1,ENST00000533368.1,ENST00000302279.3	chr8	42924697:42924802:42927323:42927450:42932358:42932507,	42927324	42927450	42927367	42927367	Nonsense_Mutation	C	T	p.Q33*
LUAD	TCGA-17-Z001-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380884	109380884	Nonsense_Mutation	A	T	p.K1297*
LUAD	TCGA-17-Z001-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366767.3,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227348243:227348337:227381486:227381635:227387257:227387353,	227381487	227381635	227381578	227381578	Nonsense_Mutation	C	A	p.E170*
LUAD	TCGA-17-Z001-01	SIGLEC6	ENST00000359982.4	chr19	52022983:52023509:52031413:52031507:52032977:52033235,	52031414	52031507	52031475	52031475	Nonsense_Mutation	C	A	p.G333*
LUAD	TCGA-17-Z001-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073388	33073388	Nonsense_Mutation	G	A	p.Q233*
LUAD	TCGA-17-Z003-01	VGLL1	ENST00000370634.3	chrX	135618353:135618393:135630747:135631167:135632926:135632980,	135630748	135631167	135631059	135631059	Nonsense_Mutation	A	T	p.R176*
LUAD	TCGA-17-Z003-01	GRIA4	ENST00000428631.2,ENST00000525187.1,ENST00000393127.2,ENST00000530497.1,ENST00000393125.2,ENST00000525032.1,ENST00000282499.5	chr11	105483002:105483161:105623706:105623946:105732749:105732934,	105623707	105623946	105623720	105623720	Nonsense_Mutation	T	A	p.Y87*
LUAD	TCGA-17-Z003-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155397	106155397	Nonsense_Mutation	G	T	p.E121*
LUAD	TCGA-17-Z003-01	TRPV2	ENST00000577397.1,ENST00000338560.7	chr17	16335097:16335164:16335279:16335614:16336887:16337012,	16335280	16335614	16335351	16335351	Nonsense_Mutation	C	T	p.Q576*
LUAD	TCGA-17-Z003-01	TNFRSF11A	ENST00000586569.1	chr18	60033940:60033993:60035933:60036717:60051983:60054892,	60035934	60036717	60036549	60036549	Nonsense_Mutation	G	T	p.G467*
LUAD	TCGA-17-Z003-01	CLCA2	ENST00000370565.4	chr1	86909469:86909694:86913190:86913461:86916245:86916282,	86913191	86913461	86913416	86913416	Nonsense_Mutation	G	T	p.E647*
LUAD	TCGA-17-Z005-01	PIP4K2A	ENST00000422321.1,ENST00000376573.4,ENST00000545335.1	chr10	22862239:22862386:22880557:22880710:22896855:22896952,	22880558	22880710	22880659	22880659	Nonsense_Mutation	C	A	p.G131*
LUAD	TCGA-17-Z005-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85750156:85750343:85752565:85752758:85758081:85758243,	85752566	85752758	85752722	85752722	Nonsense_Mutation	C	A	p.E205*
LUAD	TCGA-17-Z010-01	DUSP13	ENST00000308475.6	chr10	76857500:76857643:76861624:76861719:76868766:76868891,	76861625	76861719	76861638	76861638	Nonsense_Mutation	T	A	p.R125*
LUAD	TCGA-17-Z010-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842725	128842725	Nonsense_Mutation	G	A	p.Q1212*
LUAD	TCGA-17-Z010-01	GMPS	ENST00000496455.2,ENST00000295920.7	chr3	155643029:155643155:155649553:155649669:155652704:155652835,	155649554	155649669	155649577	155649577	Nonsense_Mutation	C	A	p.Y528*
LUAD	TCGA-17-Z011-01	LOXHD1	ENST00000579038.1,ENST00000335730.2,ENST00000300591.6,ENST00000398722.4,ENST00000441551.2,ENST00000536736.1,ENST00000441893.2,ENST00000582408.1	chr18	44104670:44104880:44109139:44109294:44113124:44113287,	44109140	44109294	44109193	44109193	Nonsense_Mutation	C	A	p.E1493*
LUAD	TCGA-17-Z011-01	ACSL6	ENST00000379249.3,ENST00000379244.1,ENST00000296869.4,ENST00000413683.1,ENST00000543479.1,ENST00000434099.1	chr5	131308958:131309093:131310450:131310528:131312340:131312414,	131310451	131310528	131310521	131310521	Nonsense_Mutation	C	T	p.W308*
LUAD	TCGA-17-Z011-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000514331.1,ENST00000351898.6	chr4	72120936:72121116:72205086:72205222:72215628:72215789,	72205087	72205222	72205152	72205152	Nonsense_Mutation	C	T	p.Q63*
LUAD	TCGA-17-Z014-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547523	35547523	Nonsense_Mutation	T	A	p.Y335*
LUAD	TCGA-17-Z014-01	ZNF341	ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32328707:32328818:32332908:32333105:32336728:32336878,	32332909	32333105	32332941	32332941	Nonsense_Mutation	A	T	p.K59*
LUAD	TCGA-17-Z014-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57955661:57955695:57958254:57958471:57962021:57962117,57955661:57955695:57958254:57958471:57963443:57963591,	57958255	57958471	57958410	57958410	Nonsense_Mutation	C	A	p.E128*
LUAD	TCGA-17-Z014-01	UXT	ENST00000335890.2,ENST00000333119.3	chrX	47511479:47511543:47516581:47516689:47517180:47517262,47511479:47511543:47516581:47516689:47516970:47517038,	47516582	47516689	47516658	47516658	Nonsense_Mutation	C	A	p.G106*
LUAD	TCGA-17-Z014-01	PAFAH1B3	ENST00000538771.1,ENST00000262890.3,ENST00000595530.1	chr19	42801467:42801517:42804121:42804244:42804322:42804439,	42804122	42804244	42804211	42804211	Nonsense_Mutation	C	A	p.G107*
LUAD	TCGA-17-Z014-01	PAFAH1B3	ENST00000594989.1	chr19	42801467:42801517:42804193:42804244:42804322:42804439,	42804194	42804244	42804211	42804211	Nonsense_Mutation	C	A	p.G107*
LUAD	TCGA-17-Z014-01	PAFAH1B3	ENST00000596265.1	chr19	42801467:42801517:42804160:42804244:42804322:42804439,	42804161	42804244	42804211	42804211	Nonsense_Mutation	C	A	p.G107*
LUAD	TCGA-17-Z014-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331682	20331682	Nonsense_Mutation	G	A	p.R254*
LUAD	TCGA-17-Z014-01	HACE1	ENST00000369127.4,ENST00000416605.2,ENST00000517424.1,ENST00000262903.4,ENST00000369125.2,ENST00000517995.1,ENST00000518402.1	chr6	105178177:105178291:105192034:105192105:105192386:105192485,	105192035	105192105	105192075	105192075	Nonsense_Mutation	G	A	p.Q825*
LUAD	TCGA-17-Z015-01	NONO	ENST00000373841.1	chrX	70503543:70503571:70510478:70510641:70511628:70511671,	70510479	70510641	70510515	70510515	Nonsense_Mutation	G	T	p.E10*
LUAD	TCGA-17-Z015-01	PCMTD1	ENST00000360540.5,ENST00000522514.1	chr8	52746077:52746249:52758220:52758323:52773404:52773444,	52758221	52758323	52758276	52758276	Nonsense_Mutation	C	A	p.E119*
LUAD	TCGA-17-Z015-01	PEX5L	ENST00000476138.1,ENST00000467460.1,ENST00000464614.1,ENST00000463761.1	chr3	179605460:179605572:179615929:179616034:179754366:179754558,179605460:179605572:179615929:179616034:179689381:179689448,	179615930	179616034	179615934	179615934	Nonsense_Mutation	G	T	p.S65*
LUAD	TCGA-17-Z015-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654664	29654664	Nonsense_Mutation	C	T	p.Q1806*
LUAD	TCGA-17-Z015-01	GLE1	ENST00000372770.4,ENST00000539582.1	chr9	131267084:131267183:131271154:131271376:131277807:131277918,	131271155	131271376	131271368	131271368	Nonsense_Mutation	G	T	p.G105*
LUAD	TCGA-17-Z015-01	MMP7	ENST00000260227.4	chr11	102391238:102391535:102393970:102394132:102395666:102395795,	102393971	102394132	102394103	102394103	Nonsense_Mutation	C	A	p.E215*
LUAD	TCGA-17-Z016-01	NEBL	ENST00000377122.4	chr10	21129667:21129778:21134186:21134297:21139323:21139431,	21134187	21134297	21134261	21134261	Nonsense_Mutation	C	A	p.G385*
LUAD	TCGA-17-Z016-01	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49162438:49162602:49162685:49162917:49163179:49163323,	49162686	49162917	49162900	49162900	Nonsense_Mutation	C	A	p.E836*
LUAD	TCGA-17-Z016-01	PIGR	ENST00000356495.4	chr1	207107764:207108091:207108830:207109163:207110439:207110544,	207108831	207109163	207109005	207109005	Nonsense_Mutation	C	A	p.E402*
LUAD	TCGA-17-Z017-01	SNRPD1	ENST00000300413.5	chr18	19192291:19192404:19203708:19203900:19209022:19209070,19202685:19202762:19203708:19203900:19209022:19209070,	19203709	19203900	19203777	19203777	Nonsense_Mutation	C	T	p.Q54*
LUAD	TCGA-17-Z017-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46165741:46165862:46179917:46180138:46182566:46182689,	46179918	46180138	46179938	46179938	Nonsense_Mutation	C	A	p.E504*
LUAD	TCGA-17-Z017-01	KCNH1	ENST00000271751.4,ENST00000367007.4	chr1	211256121:211256240:211263903:211264032:211276837:211276944,	211263904	211264032	211263912	211263912	Nonsense_Mutation	G	T	p.S144*
LUAD	TCGA-17-Z017-01	RSRC1	ENST00000480119.1	chr3	157841660:157841780:157920860:157921034:158015827:158015864,157841654:157841780:157920860:157921034:157943445:157943522,	157920861	157921034	157920997	157920997	Nonsense_Mutation	A	T	p.K153*
LUAD	TCGA-17-Z018-01	SEPT3	ENST00000406029.1,ENST00000291236.11,ENST00000396417.2,ENST00000396426.3,ENST00000328414.8,ENST00000396425.3	chr22	42387585:42387672:42388667:42388767:42390293:42390345,	42388668	42388767	42388740	42388740	Nonsense_Mutation	C	T	p.R280*
LUAD	TCGA-17-Z018-01	PRKD2	ENST00000602155.1,ENST00000291281.4,ENST00000601806.1,ENST00000597390.1,ENST00000597589.1,ENST00000600194.1,ENST00000433867.1	chr19	47178289:47178375:47181652:47181920:47184906:47185005,	47181653	47181920	47181713	47181713	Nonsense_Mutation	G	A	p.Q760*
LUAD	TCGA-17-Z018-01	PRKD2	ENST00000599019.1,ENST00000595515.1	chr19	47178289:47178375:47181622:47181920:47184906:47185005,	47181623	47181920	47181713	47181713	Nonsense_Mutation	G	A	p.Q760*
LUAD	TCGA-17-Z020-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LUAD	TCGA-17-Z020-01	ARPC3	ENST00000471641.1	chr12	110874888:110874957:110883256:110883356:110888059:110888073,110878116:110878193:110883256:110883356:110888059:110888073,110880448:110880872:110883256:110883356:110888059:110888073,	110883257	110883356	110883275	110883275	Nonsense_Mutation	C	A	p.G30*
LUAD	TCGA-17-Z020-01	PHF1	ENST00000374516.3	chr6	33382512:33382606:33382731:33382921:33383011:33383106,	33382732	33382921	33382864	33382864	Nonsense_Mutation	C	T	p.Q391*
LUAD	TCGA-17-Z020-01	PHF1	ENST00000374512.3	chr6	33382512:33382606:33382742:33382921:33383011:33383106,33382512:33382606:33382742:33382921:33383366:33383447,	33382743	33382921	33382864	33382864	Nonsense_Mutation	C	T	p.Q391*
LUAD	TCGA-17-Z021-01	CRMP1	ENST00000512574.1,ENST00000324989.7,ENST00000511535.1,ENST00000397890.2	chr4	5857869:5858034:5862752:5862937:5868394:5868483,	5862753	5862937	5862927	5862927	Nonsense_Mutation	C	A	p.E161*
LUAD	TCGA-17-Z021-01	NKAIN2	ENST00000545433.1,ENST00000368417.1	chr6	124676412:124676493:124979331:124979532:125112484:125112545,	124979332	124979532	124979487	124979487	Nonsense_Mutation	C	A	p.Y143*
LUAD	TCGA-17-Z021-01	ACSM2A	ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000396104.2	chr16	20480833:20481041:20482394:20482538:20482857:20482907,	20482395	20482538	20482505	20482505	Nonsense_Mutation	C	A	p.S236*
LUAD	TCGA-17-Z021-01	YEATS2	ENST00000305135.5	chr3	183442206:183442319:183446477:183446639:183454505:183454617,	183446478	183446639	183446632	183446632	Nonsense_Mutation	G	T	p.E269*
LUAD	TCGA-17-Z022-01	RER1	ENST00000378513.3,ENST00000378518.1	chr1	2327228:2327310:2328554:2328659:2330853:2330953,2327222:2327310:2328554:2328659:2332295:2332374,	2328555	2328659	2328561	2328561	Nonsense_Mutation	C	T	p.Q30*
LUAD	TCGA-17-Z022-01	HPCA	ENST00000480118.1	chr1	33352062:33352116:33354478:33354877:33359124:33359230,33351682:33351720:33354478:33354877:33359124:33359230,	33354479	33354877	33354567	33354567	Nonsense_Mutation	C	G	p.S23*
LUAD	TCGA-17-Z022-01	ZDHHC15	ENST00000373361.3,ENST00000373367.3,ENST00000541184.1	chrX	74651285:74651355:74670636:74670757:74698725:74698820,	74670637	74670757	74670725	74670725	Nonsense_Mutation	A	T	p.Y88*
LUAD	TCGA-17-Z022-01	TNFRSF11A	ENST00000586569.1	chr18	60033940:60033993:60035933:60036717:60051983:60054892,	60035934	60036717	60036186	60036186	Nonsense_Mutation	G	T	p.E346*
LUAD	TCGA-17-Z022-01	PXDNL	ENST00000356297.4,ENST00000522933.1	chr8	52252183:52252313:52258392:52258507:52284432:52284641,	52258393	52258507	52258450	52258450	Nonsense_Mutation	G	T	p.S1320*
LUAD	TCGA-17-Z022-01	TEX26	ENST00000380473.3	chr13	31513833:31513915:31526796:31526962:31531009:31531166,	31526797	31526962	31526832	31526832	Nonsense_Mutation	C	A	p.S61*
LUAD	TCGA-17-Z022-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000562408.1	chr16	28124224:28124371:28132990:28133083:28137009:28137169,28128638:28128783:28132990:28133083:28137009:28137169,	28132991	28133083	28133055	28133055	Nonsense_Mutation	G	A	p.Q599*
LUAD	TCGA-17-Z022-01	SLA2	ENST00000262866.4,ENST00000360672.2	chr20	35260997:35261101:35261945:35262032:35262892:35262992,	35261946	35262032	35261997	35261997	Nonsense_Mutation	G	C	p.S76*
LUAD	TCGA-17-Z022-01	PDZK1	ENST00000344770.2,ENST00000417171.1,ENST00000443667.1	chr1	145748337:145748587:145752427:145752564:145753954:145754150,	145752428	145752564	145752463	145752463	Nonsense_Mutation	C	T	p.Q166*
LUAD	TCGA-17-Z022-01	CA14	ENST00000369111.4	chr1	150235202:150235269:150235440:150235598:150235697:150235818,	150235441	150235598	150235522	150235522	Nonsense_Mutation	C	A	p.S215*
LUAD	TCGA-17-Z022-01	SQSTM1	ENST00000514093.1,ENST00000376929.3	chr5	179238614:179238682:179249957:179250053:179250857:179250939,	179249958	179250053	179250038	179250038	Nonsense_Mutation	C	T	p.R96*
LUAD	TCGA-17-Z023-01	NFE2L2	ENST00000423513.1,ENST00000446151.2,ENST00000397063.4	chr2	178097977:178098067:178098732:178098999:178129259:178129387,178097977:178098067:178098732:178098999:178128130:178128182,	178098733	178098999	178098810	178098810	Nonsense_Mutation	C	A	p.E79*
LUAD	TCGA-17-Z023-01	ATF2	ENST00000421438.1,ENST00000487334.2	chr2	175976374:175976382:175979417:175979596:175982717:175982846,	175979418	175979596	175979488	175979488	Nonsense_Mutation	G	A	p.Q186*
LUAD	TCGA-17-Z023-01	OSBPL8	ENST00000393250.4,ENST00000393249.2,ENST00000261183.3	chr12	76749615:76749801:76750405:76750508:76752485:76752591,	76750406	76750508	76750467	76750467	Nonsense_Mutation	C	A	p.E826*
LUAD	TCGA-17-Z023-01	FAM19A1	ENST00000478136.1,ENST00000496687.1	chr3	68466432:68466570:68587906:68588031:68593636:68594772,	68587907	68588031	68587942	68587942	Nonsense_Mutation	G	T	p.E99*
LUAD	TCGA-17-Z023-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198*
LUAD	TCGA-17-Z023-01	AZGP1	ENST00000292401.4,ENST00000411734.1	chr7	99565777:99566053:99569368:99569629:99573567:99573640,	99569369	99569629	99569382	99569382	Nonsense_Mutation	G	C	p.Y105*
LUAD	TCGA-17-Z025-01	CRTAM	ENST00000227348.4	chr11	122720775:122720922:122722400:122722553:122724650:122724794,	122722401	122722553	122722484	122722484	Nonsense_Mutation	G	T	p.E93*
LUAD	TCGA-17-Z025-01	OFCC1	ENST00000469426.1	chr6	9845749:9845826:9897103:9897236:9900558:9900722,9850630:9850702:9897103:9897236:9900558:9900722,	9897104	9897236	9897138	9897138	Nonsense_Mutation	G	T	p.Y270*
LUAD	TCGA-17-Z025-01	ALK	ENST00000389048.3	chr2	29754780:29754982:29917715:29917880:29940443:29940563,	29917716	29917880	29917779	29917779	Nonsense_Mutation	C	A	p.E297*
LUAD	TCGA-17-Z025-01	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248394	141248394	Nonsense_Mutation	C	A	p.E215*
LUAD	TCGA-17-Z025-01	CACNA1A	ENST00000360228.5,ENST00000573710.2	chr19	13394080:13394210:13395881:13396020:13397316:13397780,	13395882	13396020	13395964	13395964	Nonsense_Mutation	C	A	p.E1204*
LUAD	TCGA-17-Z026-01	TTC21B	ENST00000243344.7	chr2	166775785:166775943:166781058:166781188:166785644:166785845,	166781059	166781188	166781139	166781139	Nonsense_Mutation	G	C	p.S479*
LUAD	TCGA-17-Z026-01	CCDC181	ENST00000545005.1,ENST00000491570.1,ENST00000367805.3,ENST00000367806.3	chr1	169388250:169388397:169390600:169391551:169394048:169394168,	169390601	169391551	169390792	169390792	Nonsense_Mutation	G	A	p.Q293*
LUAD	TCGA-17-Z026-01	KDM5A	ENST00000382815.4,ENST00000399788.2	chr12	404738:404959:406206:406366:416111:416255,	406207	406366	406210	406210	Nonsense_Mutation	G	A	p.Q1411*
LUAD	TCGA-17-Z026-01	SMYD5	ENST00000389501.4	chr2	73450163:73450234:73450553:73450660:73451074:73451131,	73450554	73450660	73450603	73450603	Nonsense_Mutation	C	T	p.Q276*
LUAD	TCGA-17-Z026-01	ANKFY1	ENST00000572412.1,ENST00000574367.1	chr17	4084548:4084667:4085475:4085647:4086692:4086846,	4085476	4085647	4085565	4085565	Nonsense_Mutation	C	A	p.G678*
LUAD	TCGA-17-Z026-01	ANKFY1	ENST00000341657.4,ENST00000570535.1	chr17	4084548:4084667:4085475:4085644:4086692:4086846,	4085476	4085644	4085565	4085565	Nonsense_Mutation	C	A	p.G678*
LUAD	TCGA-17-Z026-01	TAOK2	ENST00000308893.4,ENST00000543033.1,ENST00000279394.3,ENST00000416441.2	chr16	29994054:29994222:29994392:29994653:29994823:29994985,	29994393	29994653	29994517	29994517	Nonsense_Mutation	C	G	p.S375*
LUAD	TCGA-17-Z026-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156752	145156752	Nonsense_Mutation	C	A	p.E668*
LUAD	TCGA-17-Z026-01	CHI3L1	ENST00000255409.3	chr1	203150327:203150413:203151858:203151980:203152768:203152919,	203151859	203151980	203151968	203151968	Nonsense_Mutation	C	A	p.E160*
LUAD	TCGA-17-Z026-01	MYO1E	ENST00000558182.1,ENST00000288235.4	chr15	59470622:59470736:59480316:59480415:59487659:59487766,	59480317	59480415	59480399	59480399	Nonsense_Mutation	C	A	p.E608*
LUAD	TCGA-17-Z026-01	ASAP1	ENST00000519483.1,ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131070199:131070322:131072824:131073315:131088593:131088652,	131072825	131073315	131073091	131073091	Nonsense_Mutation	G	A	p.Q976*
LUAD	TCGA-17-Z026-01	FN3KRP	ENST00000573158.1	chr17	80674662:80674772:80680679:80680762:80684355:80684369,	80680680	80680762	80680682	80680682	Nonsense_Mutation	A	T	p.R130*
LUAD	TCGA-17-Z026-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577142	7577142	Nonsense_Mutation	C	A	p.G266*
LUAD	TCGA-17-Z026-01	IPO8	ENST00000544829.1,ENST00000535598.1,ENST00000256079.4	chr12	30784828:30784945:30787016:30787220:30789915:30790083,	30787017	30787220	30787166	30787166	Nonsense_Mutation	G	C	p.S917*
LUAD	TCGA-17-Z026-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717355	73717355	Nonsense_Mutation	G	T	p.E2756*
LUAD	TCGA-17-Z026-01	SPATA18	ENST00000511028.1,ENST00000419395.2,ENST00000505320.1,ENST00000295213.4	chr4	52942944:52943206:52944900:52945059:52945909:52946066,	52944901	52945059	52944959	52944959	Nonsense_Mutation	C	A	p.S360*
LUAD	TCGA-17-Z026-01	USP25	ENST00000285679.6	chr21	17205666:17205867:17214716:17214859:17236586:17236765,	17214717	17214859	17214816	17214816	Nonsense_Mutation	C	G	p.S765*
LUAD	TCGA-17-Z026-01	FTSJ1	ENST00000467954.1,ENST00000348411.2,ENST00000396894.4	chrX	48339869:48339916:48340019:48340103:48340796:48340872,48339869:48339916:48340019:48340103:48340790:48340894,	48340020	48340103	48340055	48340055	Nonsense_Mutation	G	T	p.E203*
LUAD	TCGA-17-Z028-01	TRPC6	ENST00000344327.3,ENST00000532133.1	chr11	101353679:101353896:101359667:101359832:101362286:101362469,	101359668	101359832	101359687	101359687	Nonsense_Mutation	C	T	p.W425*
LUAD	TCGA-17-Z028-01	RBP7	ENST00000315901.4,ENST00000294435.7	chr1	10067654:10067806:10068230:10068332:10075839:10076078,	10068231	10068332	10068244	10068244	Nonsense_Mutation	G	A	p.W89*
LUAD	TCGA-17-Z028-01	SERPINB13	ENST00000269489.5,ENST00000431153.1,ENST00000479842.1,ENST00000344731.5,ENST00000438844.1	chr18	61254662:61254684:61255884:61256066:61256889:61256946,	61255885	61256066	61256061	61256061	Nonsense_Mutation	G	T	p.E54*
LUAD	TCGA-17-Z028-01	TENM2	ENST00000520394.1	chr5	167631376:167631626:167642044:167642277:167643772:167643927,	167642045	167642277	167642069	167642069	Nonsense_Mutation	C	A	p.Y1169*
LUAD	TCGA-17-Z028-01	AOAH	ENST00000535891.1,ENST00000487014.1,ENST00000480201.1,ENST00000495942.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36589044:36589081:36616179:36616262:36633944:36634036,	36616180	36616262	36616225	36616225	Nonsense_Mutation	T	A	p.R326*
LUAD	TCGA-17-Z030-01	PLXND1	ENST00000324093.4,ENST00000393239.1	chr3	129284729:129284860:129285369:129285474:129286334:129286447,	129285370	129285474	129285420	129285420	Nonsense_Mutation	G	A	p.Q1381*
LUAD	TCGA-17-Z030-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97823189	97823189	Nonsense_Mutation	G	T	p.E1138*
LUAD	TCGA-17-Z030-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482377	150482377	Nonsense_Mutation	C	A	p.S95*
LUAD	TCGA-17-Z030-01	OTOGL	ENST00000546620.1,ENST00000551340.1,ENST00000547103.1,ENST00000550182.1,ENST00000298820.3,ENST00000458043.2	chr12	80761340:80761519:80761984:80762089:80764349:80764469,	80761985	80762089	80762069	80762069	Nonsense_Mutation	G	T	p.G2190*
LUAD	TCGA-17-Z030-01	USP13	ENST00000263966.3,ENST00000496897.1	chr3	179481789:179481956:179483482:179483636:179499526:179499611,	179483483	179483636	179483594	179483594	Nonsense_Mutation	G	T	p.E791*
LUAD	TCGA-17-Z030-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44900641:44900803:44903037:44903183:44905627:44905734,	44903038	44903183	44903124	44903124	Nonsense_Mutation	G	A	p.Q1069*
LUAD	TCGA-17-Z030-01	NLRP5	ENST00000390649.3	chr19	56544907:56545075:56549390:56549561:56552287:56552458,	56549391	56549561	56549544	56549544	Nonsense_Mutation	C	A	p.C923*
LUAD	TCGA-17-Z030-01	KLF7	ENST00000423015.1	chr2	207953181:207953305:207988699:207989128:208030190:208030295,	207988700	207989128	207988804	207988804	Nonsense_Mutation	C	A	p.E143*
LUAD	TCGA-17-Z030-01	CNOT11	ENST00000289382.3	chr2	101874299:101874417:101879000:101879153:101881306:101881509,	101879001	101879153	101879006	101879006	Nonsense_Mutation	C	T	p.Q229*
LUAD	TCGA-17-Z030-01	TMEM44	ENST00000473092.1	chr3	194309257:194309368:194313769:194313799:194325015:194325170,	194313770	194313799	194313775	194313775	Nonsense_Mutation	C	A	p.E402*
LUAD	TCGA-17-Z030-01	TMEM44	ENST00000273580.7,ENST00000432352.1	chr3	194309257:194309368:194313769:194313802:194325015:194325170,	194313770	194313802	194313775	194313775	Nonsense_Mutation	C	A	p.E402*
LUAD	TCGA-17-Z031-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539336.2,ENST00000545556.2,ENST00000606320.1,ENST00000302349.5	chr12	123687796:123687922:123694602:123694709:123699290:123699381,	123694603	123694709	123694650	123694650	Nonsense_Mutation	C	A	p.E383*
LUAD	TCGA-17-Z031-01	POGZ	ENST00000409503.1,ENST00000531094.1	chr1	151397430:151397537:151400298:151400490:151400598:151400889,	151400299	151400490	151400443	151400443	Nonsense_Mutation	C	A	p.E312*
LUAD	TCGA-17-Z031-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151397430:151397537:151400298:151400517:151400598:151400889,	151400299	151400517	151400443	151400443	Nonsense_Mutation	C	A	p.E312*
LUAD	TCGA-17-Z031-01	DHRS7B	ENST00000578426.1	chr17	21030267:21030304:21075330:21075509:21081545:21081655,21030267:21030304:21075330:21075509:21086906:21086976,	21075331	21075509	21075495	21075495	Nonsense_Mutation	C	G	p.S62*
LUAD	TCGA-17-Z031-01	DSG4	ENST00000359747.4,ENST00000308128.4	chr18	28979234:28979506:28980843:28980983:28983378:28983597,	28980844	28980983	28980940	28980940	Nonsense_Mutation	T	A	p.Y458*
LUAD	TCGA-17-Z031-01	SIMC1	ENST00000429602.2	chr5	175665509:175665640:175716656:175717958:175722032:175722080,	175716657	175717958	175717056	175717056	Nonsense_Mutation	C	T	p.Q158*
LUAD	TCGA-17-Z031-01	ARIH2	ENST00000484999.1	chr3	48960197:48960244:48964894:48965246:48999044:48999071,48962150:48962272:48964894:48965246:48982568:48982614,48962150:48962272:48964894:48965246:48999044:48999071,48960197:48960244:48964894:48965246:48982568:48982614,	48964895	48965246	48965034	48965034	Nonsense_Mutation	G	T	p.E15*
LUAD	TCGA-17-Z031-01	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69094994	69094994	Nonsense_Mutation	C	T	p.W309*
LUAD	TCGA-17-Z031-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290505	108290505	Nonsense_Mutation	G	T	p.E469*
LUAD	TCGA-17-Z031-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290505	108290505	Nonsense_Mutation	G	T	p.E469*
LUAD	TCGA-17-Z031-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469849	21469849	Nonsense_Mutation	G	T	p.E356*
LUAD	TCGA-17-Z031-01	GRK4	ENST00000504933.1,ENST00000398051.4,ENST00000345167.6,ENST00000398052.4,ENST00000505271.1	chr4	3024140:3024178:3029638:3029728:3030927:3031136,	3029639	3029728	3029698	3029698	Nonsense_Mutation	C	T	p.R344*
LUAD	TCGA-17-Z031-01	SLC26A10	ENST00000490243.1,ENST00000474791.1,ENST00000440686.1,ENST00000320442.4,ENST00000474359.2,ENST00000379218.2,ENST00000487816.1	chr12	58018678:58018765:58018905:58018939:58019018:58019101,	58018906	58018939	58018915	58018915	Nonsense_Mutation	A	T	p.K452*
LUAD	TCGA-17-Z031-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189856212:189856257:189856394:189856448:189856909:189856954,	189856395	189856448	189856422	189856422	Nonsense_Mutation	G	T	p.G309*
LUAD	TCGA-17-Z031-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091672	143091672	Nonsense_Mutation	C	A	p.E1402*
LUAD	TCGA-17-Z031-01	CNNM1	ENST00000370528.3,ENST00000356713.4,ENST00000446890.1	chr10	101124711:101124759:101136811:101136975:101147576:101147760,	101136812	101136975	101136906	101136906	Nonsense_Mutation	C	A	p.Y757*
LUAD	TCGA-17-Z031-01	DDX23	ENST00000308025.3,ENST00000550834.1	chr12	49231074:49231176:49231306:49231440:49231724:49231844,	49231307	49231440	49231390	49231390	Nonsense_Mutation	C	A	p.E224*
LUAD	TCGA-17-Z031-01	DDX23	ENST00000547165.1	chr12	49230808:49230820:49231063:49231440:49231724:49231844,	49231064	49231440	49231390	49231390	Nonsense_Mutation	C	A	p.E224*
LUAD	TCGA-17-Z031-01	SLC25A39	ENST00000537904.2,ENST00000377095.5,ENST00000590194.1,ENST00000225308.8,ENST00000586016.1	chr17	42397989:42398099:42398425:42398599:42398801:42398926,	42398426	42398599	42398533	42398533	Nonsense_Mutation	G	T	p.S187*
LUAD	TCGA-17-Z031-01	CTNNA2	ENST00000466387.1,ENST00000496558.1,ENST00000402739.4,ENST00000541047.1,ENST00000361291.4,ENST00000540488.1	chr2	79971512:79971708:80085138:80085305:80096941:80097061,	80085139	80085305	80085187	80085187	Nonsense_Mutation	C	A	p.S116*
LUAD	TCGA-17-Z031-01	SPAG6	ENST00000376601.1,ENST00000456231.2	chr10	22634651:22634747:22653781:22653948:22680657:22680849,	22653782	22653948	22653940	22653940	Nonsense_Mutation	G	T	p.E170*
LUAD	TCGA-17-Z031-01	TMEM135	ENST00000535167.1	chr11	86802403:86802437:86868382:86868448:86947679:86947726,86782564:86782657:86868382:86868448:86947679:86947726,	86868383	86868448	86868446	86868446	Nonsense_Mutation	G	T	p.E154*
LUAD	TCGA-17-Z031-01	CEP350	ENST00000367607.3	chr1	180003085:180003217:180006060:180006224:180010272:180010383,	180006061	180006224	180006108	180006108	Nonsense_Mutation	G	T	p.E1332*
LUAD	TCGA-17-Z031-01	C12orf42	ENST00000378113.2,ENST00000548048.1,ENST00000548883.1	chr12	103695732:103696337:103699751:103700123:103762664:103762776,	103699752	103700123	103699929	103699929	Nonsense_Mutation	C	A	p.E85*
LUAD	TCGA-17-Z031-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19955660	19955660	Nonsense_Mutation	C	T	p.Q380*
LUAD	TCGA-17-Z031-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230723819	230723819	Nonsense_Mutation	A	T	p.C190*
LUAD	TCGA-17-Z031-01	TTC13	ENST00000366662.4,ENST00000466507.2,ENST00000414259.1,ENST00000481976.2,ENST00000522821.1	chr1	231093969:231094045:231096954:231097049:231114305:231114542,	231096955	231097049	231097014	231097014	Nonsense_Mutation	C	A	p.E103*
LUAD	TCGA-17-Z031-01	TIAM1	ENST00000469412.1,ENST00000541036.1,ENST00000286827.3	chr21	32598041:32598266:32617803:32617976:32624057:32624505,	32617804	32617976	32617896	32617896	Nonsense_Mutation	C	A	p.E498*
LUAD	TCGA-17-Z031-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7231129	7231129	Nonsense_Mutation	G	T	p.E933*
LUAD	TCGA-17-Z031-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72152078:72152348:72165697:72165844:72169097:72169222,	72165698	72165844	72165840	72165840	Nonsense_Mutation	G	T	p.E1173*
LUAD	TCGA-17-Z031-01	FBXW2	ENST00000474117.1,ENST00000608872.1	chr9	123540628:123540823:123550046:123550556:123555426:123555535,	123550047	123550556	123550109	123550109	Nonsense_Mutation	G	C	p.S143*
LUAD	TCGA-17-Z031-01	FBXW2	ENST00000453291.1	chr9	123540628:123540823:123550046:123550464:123555426:123555535,	123550047	123550464	123550109	123550109	Nonsense_Mutation	G	C	p.S143*
LUAD	TCGA-17-Z031-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2,ENST00000508157.3	chr5	70793096:70793253:70797388:70797480:70798425:70798618,	70797389	70797480	70797398	70797398	Nonsense_Mutation	G	T	p.E656*
LUAD	TCGA-17-Z031-01	NUP93	ENST00000563405.1,ENST00000564887.1,ENST00000542526.1,ENST00000308159.5,ENST00000569842.1	chr16	56870536:56870629:56871519:56871638:56872863:56872981,	56871520	56871638	56871538	56871538	Nonsense_Mutation	G	T	p.E517*
LUAD	TCGA-17-Z031-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678173	73678173	Nonsense_Mutation	G	T	p.G1506*
LUAD	TCGA-17-Z031-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124487	76124487	Nonsense_Mutation	T	A	p.K68*
LUAD	TCGA-17-Z031-01	SP140	ENST00000486687.2,ENST00000392045.3	chr2	231113599:231113683:231120166:231120247:231134246:231134333,231115695:231115776:231120166:231120247:231134246:231134333,231118048:231118132:231120166:231120247:231134246:231134333,	231120167	231120247	231120199	231120199	Nonsense_Mutation	G	T	p.G398*
LUAD	TCGA-17-Z032-01	ACVR1B	ENST00000257963.4,ENST00000415850.2,ENST00000542485.1,ENST00000426655.2	chr12	52374752:52374983:52377782:52377950:52378975:52379132,	52377783	52377950	52377796	52377796	Nonsense_Mutation	G	A	p.W275*
LUAD	TCGA-17-Z032-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42049985:42050037:42052520:42052727:42053936:42054048,	42052521	42052727	42052641	42052641	Nonsense_Mutation	G	T	p.E2438*
LUAD	TCGA-17-Z032-01	XIAP	ENST00000371199.3	chrX	122994303:122994395:123019480:123020389:123022468:123022533,122993727:122993755:123019480:123020389:123022468:123022533,122994044:122994143:123019480:123020389:123022468:123022533,	123019481	123020389	123020085	123020085	Nonsense_Mutation	C	A	p.Y191*
LUAD	TCGA-17-Z033-01	TTC7B	ENST00000357056.2,ENST00000328459.6	chr14	91146815:91146879:91155883:91156056:91161843:91161922,	91155884	91156056	91155922	91155922	Nonsense_Mutation	G	T	p.Y304*
LUAD	TCGA-17-Z033-01	FAM129B	ENST00000373312.3,ENST00000373314.3	chr9	130270371:130270479:130270700:130270817:130271254:130271410,	130270701	130270817	130270748	130270748	Nonsense_Mutation	C	A	p.E463*
LUAD	TCGA-17-Z033-01	PAX5	ENST00000377852.2,ENST00000446742.1	chr9	36840554:36840633:36846839:36846926:36882000:36882102,36840547:36840633:36846839:36846926:36923351:36923481,	36846840	36846926	36846921	36846921	Nonsense_Mutation	C	A	p.E340*
LUAD	TCGA-17-Z036-01	PENK	ENST00000518974.1,ENST00000451791.2	chr8	57354338:57354496:57358374:57358515:57358984:57359040,	57358375	57358515	57358431	57358431	Nonsense_Mutation	G	A	p.Q28*
LUAD	TCGA-17-Z037-01	PDCD2	ENST00000453163.2,ENST00000392090.2,ENST00000542896.1,ENST00000167218.5,ENST00000537445.1,ENST00000443345.2	chr6	170892144:170892276:170892592:170892835:170893386:170893477,	170892593	170892835	170892657	170892657	Nonsense_Mutation	G	T	p.Y154*
LUAD	TCGA-17-Z037-01	PDCD2	ENST00000545869.1,ENST00000544336.1,ENST00000539212.1,ENST00000544755.1,ENST00000544866.1	chr6	170892144:170892276:170892592:170892711:170893386:170893477,	170892593	170892711	170892657	170892657	Nonsense_Mutation	G	T	p.Y154*
LUAD	TCGA-17-Z037-01	PTPRC	ENST00000352140.3,ENST00000529828.1	chr1	198661475:198661502:198668692:198668833:198672426:198672475,198661475:198661502:198668692:198668833:198671515:198671659,198666009:198666038:198668692:198668833:198672426:198672475,	198668693	198668833	198668831	198668831	Nonsense_Mutation	C	A	p.S144*
LUAD	TCGA-17-Z037-01	ABCG1	ENST00000361802.2,ENST00000398437.1,ENST00000472587.1,ENST00000340588.4	chr21	43706043:43706104:43707998:43708183:43708320:43708422,	43707999	43708183	43708163	43708163	Nonsense_Mutation	C	T	p.R526*
LUAD	TCGA-17-Z037-01	FANCG	ENST00000425676.1,ENST00000378643.3	chr9	35076446:35076580:35076720:35076867:35076967:35077098,	35076721	35076867	35076825	35076825	Nonsense_Mutation	T	A	p.K274*
LUAD	TCGA-17-Z041-01	SZT2	ENST00000562955.1	chr1	43880752:43880884:43881630:43881772:43882205:43882312,	43881631	43881772	43881758	43881758	Nonsense_Mutation	C	A	p.S253*
LUAD	TCGA-17-Z041-01	CAAP1	ENST00000333916.5,ENST00000517946.1,ENST00000535437.1	chr9	26884807:26884883:26886101:26886186:26887310:26887476,	26886102	26886186	26886165	26886165	Nonsense_Mutation	T	A	p.K176*
LUAD	TCGA-17-Z042-01	ZBTB40	ENST00000374651.4,ENST00000375647.4,ENST00000404138.1	chr1	22835592:22835726:22837671:22837840:22838168:22838627,	22837672	22837840	22837825	22837825	Nonsense_Mutation	G	T	p.E663*
LUAD	TCGA-17-Z042-01	MTUS1	ENST00000297488.6	chr8	17532725:17532761:17541836:17542051:17554765:17555179,	17541837	17542051	17542025	17542025	Nonsense_Mutation	G	A	p.R830*
LUAD	TCGA-17-Z042-01	FAM114A1	ENST00000358869.2	chr4	38870086:38870167:38879691:38880047:38893363:38893416,	38879692	38880047	38879976	38879976	Nonsense_Mutation	G	T	p.E93*
LUAD	TCGA-17-Z042-01	MS4A1	ENST00000532073.1	chr11	60231760:60231817:60233393:60233630:60234431:60234533,60231760:60231817:60233393:60233630:60234470:60234533,	60233394	60233630	60233577	60233577	Nonsense_Mutation	G	T	p.E174*
LUAD	TCGA-17-Z042-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244214	41244214	Nonsense_Mutation	C	A	p.E816*
LUAD	TCGA-17-Z042-01	COL15A1	ENST00000375001.3	chr9	101802802:101802838:101804326:101804389:101806849:101806918,	101804327	101804389	101804358	101804358	Nonsense_Mutation	T	A	p.L848*
LUAD	TCGA-17-Z042-01	TEKT1	ENST00000338694.2	chr17	6719152:6719281:6722511:6722677:6733505:6733665,	6722512	6722677	6722663	6722663	Nonsense_Mutation	C	A	p.E69*
LUAD	TCGA-17-Z042-01	CASC4	ENST00000299957.6,ENST00000345795.2,ENST00000559222.1	chr15	44581356:44581554:44620882:44620985:44624185:44624257,44615162:44615217:44620882:44620985:44624185:44624257,	44620883	44620985	44620906	44620906	Nonsense_Mutation	G	T	p.E136*
LUAD	TCGA-17-Z042-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000562090.1,ENST00000447066.2	chr16	74528657:74528729:74530338:74530542:74537428:74537644,	74530339	74530542	74530506	74530506	Nonsense_Mutation	C	A	p.E271*
LUAD	TCGA-17-Z043-01	MYO1D	ENST00000394649.4,ENST00000318217.5,ENST00000577352.1	chr17	30821736:30821933:30932104:30932259:30965739:30965853,	30932105	30932259	30932130	30932130	Nonsense_Mutation	C	A	p.G947*
LUAD	TCGA-17-Z044-01	UNC93A	ENST00000230256.3,ENST00000366829.2	chr6	167717406:167717621:167719402:167719538:167721266:167721398,	167719403	167719538	167719510	167719510	Nonsense_Mutation	C	A	p.Y316*
LUAD	TCGA-17-Z044-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903866	5903866	Nonsense_Mutation	G	A	p.W359*
LUAD	TCGA-17-Z044-01	ZNF202	ENST00000530393.1,ENST00000529691.1,ENST00000336139.4	chr11	123597564:123597699:123598183:123598303:123598840:123598970,	123598184	123598303	123598271	123598271	Nonsense_Mutation	G	A	p.Q289*
LUAD	TCGA-17-Z045-01	ACTR2	ENST00000260641.5	chr2	65466985:65467096:65473657:65473873:65478160:65478233,	65473658	65473873	65473744	65473744	Nonsense_Mutation	G	A	p.W82*
LUAD	TCGA-17-Z045-01	ADCY2	ENST00000338316.4	chr5	7520850:7521012:7626279:7626429:7690803:7690952,	7626280	7626429	7626395	7626395	Nonsense_Mutation	C	A	p.S229*
LUAD	TCGA-17-Z045-01	SETX	ENST00000372169.2,ENST00000436441.1	chr9	135136826:135140372:135144789:135144876:135145001:135145077,	135144790	135144876	135144819	135144819	Nonsense_Mutation	C	A	p.E2449*
LUAD	TCGA-17-Z045-01	LMNB1	ENST00000504788.1,ENST00000261366.5,ENST00000460265.1	chr5	126158472:126158577:126161679:126161799:126168385:126168493,	126161680	126161799	126161782	126161782	Nonsense_Mutation	A	T	p.K532*
LUAD	TCGA-17-Z045-01	OPHN1	ENST00000355520.5	chrX	67273486:67273652:67283695:67284019:67292993:67293141,	67283696	67284019	67283822	67283822	Nonsense_Mutation	G	A	p.Q678*
LUAD	TCGA-17-Z045-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61298792:61298927:61304054:61304293:61308586:61308645,61300592:61300686:61304054:61304293:61308586:61308645,	61304055	61304293	61304155	61304155	Nonsense_Mutation	G	T	p.E178*
LUAD	TCGA-17-Z045-01	LUM	ENST00000546642.1	chr12	91497936:91498096:91501894:91502464:91505174:91505216,	91501895	91502464	91502284	91502284	Nonsense_Mutation	A	T	p.L158*
LUAD	TCGA-17-Z047-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832734	39832734	Nonsense_Mutation	G	A	p.Q275*
LUAD	TCGA-17-Z047-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832734	39832734	Nonsense_Mutation	G	A	p.Q275*
LUAD	TCGA-17-Z048-01	SETD4	ENST00000481477.1	chr21	37416079:37416254:37417879:37418309:37420605:37420694,37416079:37416254:37417879:37418309:37425880:37425918,	37417880	37418309	37418122	37418122	Nonsense_Mutation	G	A	p.Q162*
LUAD	TCGA-17-Z049-01	TNNT2	ENST00000466570.1,ENST00000458432.2,ENST00000491504.1,ENST00000455702.1,ENST00000360372.4,ENST00000438742.1,ENST00000367322.1,ENST00000515042.1,ENST00000367315.2,ENST00000421663.2,ENST00000367318.5,ENST00000236918.7,ENST00000503459.1,ENST00000509001.1,ENST00000367317.4	chr1	201333425:201333503:201334318:201334435:201334737:201334798,	201334319	201334435	201334414	201334414	Nonsense_Mutation	C	A	p.E96*
LUAD	TCGA-17-Z049-01	FSTL5	ENST00000536695.1,ENST00000427802.2,ENST00000306100.5,ENST00000379164.4	chr4	162463754:162463845:162508606:162508727:162577479:162577646,	162508607	162508727	162508659	162508659	Nonsense_Mutation	G	T	p.C321*
LUAD	TCGA-17-Z049-01	TLN2	ENST00000474847.2,ENST00000306829.6,ENST00000561311.1	chr15	62945360:62945513:62948142:62948285:62949969:62950097,	62948143	62948285	62948149	62948149	Nonsense_Mutation	G	A	p.W175*
LUAD	TCGA-17-Z049-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000414883.1,ENST00000282641.2,ENST00000395495.1	chr10	52601621:52601752:52603747:52603882:52619601:52619745,	52603748	52603882	52603771	52603771	Nonsense_Mutation	C	A	p.E64*
LUAD	TCGA-17-Z049-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123846990	123846990	Nonsense_Mutation	G	T	p.E1659*
LUAD	TCGA-17-Z049-01	RYR1	ENST00000593322.1,ENST00000359596.3,ENST00000355481.4,ENST00000594335.1,ENST00000360985.3	chr19	39034410:39034515:39037084:39037166:39038872:39039012,	39037085	39037166	39037100	39037100	Nonsense_Mutation	G	T	p.E4005*
LUAD	TCGA-17-Z050-01	SERPINB3	ENST00000283752.5	chr18	61322431:61323295:61324064:61324220:61324503:61324645,	61324065	61324220	61324185	61324185	Nonsense_Mutation	G	T	p.Y216*
LUAD	TCGA-17-Z050-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000546465.1,ENST00000359794.5,ENST00000546964.1,ENST00000552752.1,ENST00000340802.6,ENST00000312352.7,ENST00000395233.2,ENST00000551804.1	chr12	48535120:48535164:48535522:48535610:48535696:48535849,	48535523	48535610	48535581	48535581	Nonsense_Mutation	C	T	p.Q562*
LUAD	TCGA-17-Z050-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137756394:137756651:137759763:137760030:137761099:137761271,	137759764	137760030	137759816	137759816	Nonsense_Mutation	C	A	p.S1342*
LUAD	TCGA-17-Z051-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57110315	57110315	Nonsense_Mutation	G	A	p.Q1667*
LUAD	TCGA-17-Z053-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100771809:100771945:100773701:100773935:100775155:100775350,	100773702	100773935	100773740	100773740	Nonsense_Mutation	G	T	p.E104*
LUAD	TCGA-17-Z053-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47635539:47635694:47637232:47637511:47639552:47639699,	47637233	47637511	47637443	47637443	Nonsense_Mutation	C	T	p.Q193*
LUAD	TCGA-17-Z053-01	CYP21A2	ENST00000435122.2,ENST00000479074.1,ENST00000483041.1,ENST00000418967.2,ENST00000479730.1	chr6	32007541:32007612:32007781:32007982:32008182:32008361,	32007782	32007982	32007878	32007878	Nonsense_Mutation	G	T	p.E279*
LUAD	TCGA-17-Z053-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022706	11022706	Nonsense_Mutation	A	T	p.K274*
LUAD	TCGA-17-Z053-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101076251	101076251	Nonsense_Mutation	C	A	p.G249*
LUAD	TCGA-17-Z053-01	GNPTAB	ENST00000299314.7	chr12	102151349:102151435:102153807:102153921:102154904:102155124,	102153808	102153921	102153823	102153823	Nonsense_Mutation	G	C	p.Y1078*
LUAD	TCGA-17-Z055-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28000020:28000618:28090104:28090198:28096527:28096621,	28090105	28090198	28090145	28090145	Nonsense_Mutation	C	A	p.E798*
LUAD	TCGA-17-Z055-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67170421:67170535:67170747:67170918:67171546:67171654,	67170748	67170918	67170783	67170783	Nonsense_Mutation	C	A	p.G1005*
LUAD	TCGA-17-Z055-01	WIPF1	ENST00000392546.2,ENST00000359761.3,ENST00000392547.2,ENST00000409891.1,ENST00000272746.5,ENST00000409415.3	chr2	175437051:175437174:175439931:175440108:175446037:175446167,	175439932	175440108	175440100	175440100	Nonsense_Mutation	C	A	p.G64*
LUAD	TCGA-17-Z055-01	CRYZ	ENST00000370872.3,ENST00000417775.1,ENST00000340866.5,ENST00000370870.1	chr1	75172788:75172888:75175781:75175931:75180262:75180314,	75175782	75175931	75175924	75175924	Nonsense_Mutation	A	T	p.L163*
LUAD	TCGA-17-Z055-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179609513:179609580:179620001:179620202:179621173:179621332,	179620002	179620202	179620108	179620108	Nonsense_Mutation	T	A	p.L636*
LUAD	TCGA-17-Z055-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102688	168102688	Nonsense_Mutation	C	T	p.Q1596*
LUAD	TCGA-17-Z055-01	MX2	ENST00000330714.3	chr21	42754341:42754491:42762491:42762630:42767513:42767712,	42762492	42762630	42762541	42762541	Nonsense_Mutation	T	A	p.L261*
LUAD	TCGA-17-Z055-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527461	29527461	Nonsense_Mutation	C	T	p.R304*
LUAD	TCGA-17-Z055-01	KLHL2	ENST00000509704.1,ENST00000226725.6,ENST00000514860.1	chr4	166141152:166141211:166159929:166160051:166184348:166184433,166149958:166150065:166159929:166160051:166184348:166184433,	166159930	166160051	166160028	166160028	Nonsense_Mutation	C	T	p.Q120*
LUAD	TCGA-17-Z055-01	ARHGEF37	ENST00000333677.6	chr5	148998504:148998605:148999916:149000027:149001295:149001430,	148999917	149000027	148999941	148999941	Nonsense_Mutation	G	T	p.E307*
LUAD	TCGA-17-Z055-01	FRS2	ENST00000299293.2,ENST00000549921.1,ENST00000397997.2,ENST00000550389.1	chr12	69965055:69965214:69965897:69966061:69967784:69968744,	69965898	69966061	69965981	69965981	Nonsense_Mutation	A	T	p.R166*
LUAD	TCGA-17-Z055-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097665	27097665	Nonsense_Mutation	C	G	p.S1085*
LUAD	TCGA-17-Z056-01	SLMAP	ENST00000417128.1,ENST00000494088.1,ENST00000416658.1,ENST00000497084.1	chr3	57902707:57902804:57908615:57908750:57913022:57913187,57902707:57902804:57908615:57908750:57911571:57911661,	57908616	57908750	57908711	57908711	Nonsense_Mutation	T	A	p.C768*
LUAD	TCGA-17-Z056-01	FER	ENST00000281092.4	chr5	108103793:108103939:108133824:108134090:108168470:108168521,	108133825	108134090	108134022	108134022	Nonsense_Mutation	C	T	p.Q47*
LUAD	TCGA-17-Z056-01	DNASE1	ENST00000570376.1,ENST00000571460.1,ENST00000414110.2,ENST00000576050.1	chr16	3705373:3705521:3706102:3706186:3706638:3706754,	3706103	3706186	3706127	3706127	Nonsense_Mutation	C	A	p.Y87*
LUAD	TCGA-17-Z056-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507414	74507414	Nonsense_Mutation	C	A	p.E401*
LUAD	TCGA-17-Z056-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507414	74507414	Nonsense_Mutation	C	A	p.E401*
LUAD	TCGA-17-Z056-01	GGCT	ENST00000409436.1,ENST00000426081.1	chr7	30536692:30536851:30538418:30538554:30540151:30540296,30537356:30537512:30538418:30538554:30540151:30540296,	30538419	30538554	30538475	30538475	Nonsense_Mutation	G	A	p.R123*
LUAD	TCGA-17-Z056-01	SEMA3A	ENST00000436949.1,ENST00000265362.4	chr7	83592520:83592663:83606447:83606512:83610636:83610794,	83606448	83606512	83606484	83606484	Nonsense_Mutation	C	A	p.G561*
LUAD	TCGA-17-Z056-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74995660:74995825:74999128:74999251:75002628:75002703,	74999129	74999251	74999205	74999205	Nonsense_Mutation	A	T	p.C637*
LUAD	TCGA-17-Z056-01	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324257	158324257	Nonsense_Mutation	G	A	p.W50*
LUAD	TCGA-17-Z056-01	ABCC11	ENST00000569172.1	chr16	48221300:48221338:48226430:48226547:48227789:48227893,	48226431	48226547	48226495	48226495	Nonsense_Mutation	G	T	p.S881*
LUAD	TCGA-17-Z056-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48221300:48221338:48226430:48226628:48227789:48227893,	48226431	48226628	48226495	48226495	Nonsense_Mutation	G	T	p.S881*
LUAD	TCGA-17-Z057-01	KMT2D	ENST00000301067.7	chr12	49437650:49437781:49437982:49438087:49438185:49438305,	49437983	49438087	49438022	49438022	Nonsense_Mutation	G	A	p.Q1717*
LUAD	TCGA-17-Z057-01	WNK1	ENST00000537687.1,ENST00000530271.2,ENST00000574679.1	chr12	971400:971436:980430:980514:987380:987527,971400:971436:980430:980514:987377:987478,977733:978270:980430:980514:987377:987478,	980431	980514	980452	980452	Nonsense_Mutation	C	T	p.Q1134*
LUAD	TCGA-17-Z057-01	FBXL17	ENST00000359660.5,ENST00000542267.1	chr5	107194745:107197561:107216737:107216880:107356625:107356702,	107216738	107216880	107216863	107216863	Nonsense_Mutation	G	A	p.R614*
LUAD	TCGA-17-Z057-01	HPS4	ENST00000398141.1,ENST00000422379.2,ENST00000429411.1	chr22	26861486:26861517:26862016:26862070:26862191:26862228,	26862017	26862070	26862054	26862054	Nonsense_Mutation	C	T	p.W236*
LUAD	TCGA-17-Z057-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539602	187539602	Nonsense_Mutation	G	C	p.S2713*
LUAD	TCGA-17-Z057-01	SEC24A	ENST00000513123.1,ENST00000398844.2,ENST00000322887.4	chr5	134018062:134018172:134022479:134022592:134023870:134023989,	134022480	134022592	134022559	134022559	Nonsense_Mutation	C	A	p.S524*
LUAD	TCGA-17-Z057-01	SYNE1	ENST00000367255.5,ENST00000265368.4,ENST00000448038.1,ENST00000471834.1,ENST00000423061.1	chr6	152671752:152671905:152673161:152673488:152674397:152674568,	152673162	152673488	152673179	152673179	Nonsense_Mutation	G	A	p.Q3855*
LUAD	TCGA-17-Z058-01	ZNF423	ENST00000563137.2	chr16	49764681:49764882:49823397:49823457:49889645:49890046,	49823398	49823457	49823452	49823452	Nonsense_Mutation	C	A	p.E8*
LUAD	TCGA-17-Z059-01	ALS2CL	ENST00000434140.1	chr3	46721919:46722031:46722735:46722897:46722989:46723063,46721919:46722031:46722735:46722897:46722993:46723088,	46722736	46722897	46722809	46722809	Nonsense_Mutation	G	A	p.Q455*
LUAD	TCGA-17-Z059-01	COLEC12	ENST00000400256.3	chr18	333006:333143:334741:335230:346294:347341,	334742	335230	334871	334871	Nonsense_Mutation	C	A	p.G563*
LUAD	TCGA-17-Z059-01	CLEC4M	ENST00000394122.2,ENST00000248228.4,ENST00000334806.5,ENST00000327325.5,ENST00000595496.1,ENST00000359059.5,ENST00000602143.1,ENST00000596707.1	chr19	7831541:7831693:7832401:7832514:7833723:7833874,	7832402	7832514	7832417	7832417	Nonsense_Mutation	C	T	p.Q318*
LUAD	TCGA-17-Z060-01	EIF4E2	ENST00000409394.1,ENST00000409167.3,ENST00000409322.1	chr2	233415413:233415454:233421125:233421240:233428956:233429061,	233421126	233421240	233421190	233421190	Nonsense_Mutation	G	T	p.E29*
LUAD	TCGA-17-Z060-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274542	114274542	Nonsense_Mutation	G	T	p.E1590*
LUAD	TCGA-17-Z060-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509746	106509746	Nonsense_Mutation	C	A	p.Y580*
LUAD	TCGA-17-Z060-01	ACTN2	ENST00000492634.1	chr1	236894549:236894614:236898934:236899020:236900421:236900480,236897732:236897818:236898934:236899020:236900421:236900480,	236898935	236899020	236898981	236898981	Nonsense_Mutation	C	A	p.Y248*
LUAD	TCGA-17-Z061-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579494	7579494	Nonsense_Mutation	T	A	p.R65*
LUAD	TCGA-17-Z062-01	OASL	ENST00000339275.5	chr12	121458359:121458861:121461792:121461940:121465378:121465620,121458359:121458861:121461792:121461940:121469244:121469420,	121461793	121461940	121461898	121461898	Nonsense_Mutation	T	A	p.R234*
LUAD	TCGA-17-Z062-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114276798	114276798	Nonsense_Mutation	G	T	p.G2342*
LUAD	TCGA-17-Z062-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579377	7579377	Nonsense_Mutation	G	A	p.Q104*
LUAD	TCGA-35-3615-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600510	10600510	Nonsense_Mutation	C	A	p.E449*
LUAD	TCGA-35-4122-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12122960	12122960	Nonsense_Mutation	A	T	p.K978*
LUAD	TCGA-35-4122-01	DGKH	ENST00000337343.4,ENST00000379274.2,ENST00000540693.1,ENST00000538674.1,ENST00000261491.5,ENST00000536612.1,ENST00000498255.2	chr13	42783466:42783601:42784737:42784901:42788642:42788748,	42784738	42784901	42784849	42784849	Nonsense_Mutation	G	T	p.E852*
LUAD	TCGA-35-4122-01	DENND1A	ENST00000373624.2,ENST00000373620.3,ENST00000373618.1	chr9	126531792:126531842:126641229:126641300:126692167:126692393,126554865:126554909:126641229:126641300:126692167:126692386,	126641230	126641300	126641232	126641232	Nonsense_Mutation	G	A	p.Q14*
LUAD	TCGA-35-4122-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640042	36640042	Nonsense_Mutation	G	C	p.S726*
LUAD	TCGA-35-4123-01	SGCD	ENST00000435422.3,ENST00000337851.4,ENST00000517913.1,ENST00000447401.1	chr5	155771498:155771687:155935610:155935712:156016240:156016244,	155935611	155935712	155935668	155935668	Nonsense_Mutation	G	T	p.E83*
LUAD	TCGA-35-4123-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821047	97821047	Nonsense_Mutation	C	T	p.Q424*
LUAD	TCGA-35-4123-01	BTBD11	ENST00000420571.2,ENST00000490090.2	chr12	107713674:107713852:107914263:107914413:107937711:107937916,	107914264	107914413	107914368	107914368	Nonsense_Mutation	G	T	p.E414*
LUAD	TCGA-35-5375-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433320:10433415:10433820:10433950:10434050:10434242,	10433821	10433950	10433905	10433905	Nonsense_Mutation	G	A	p.Q349*
LUAD	TCGA-35-5375-01	DNAH5	ENST00000265104.4	chr5	13829618:13829813:13830134:13830322:13830705:13830884,	13830135	13830322	13830206	13830206	Nonsense_Mutation	T	A	p.K2060*
LUAD	TCGA-35-5375-01	GPRC6A	ENST00000310357.3	chr6	117121746:117121959:117127532:117128369:117130476:117130780,	117127533	117128369	117128030	117128030	Nonsense_Mutation	G	A	p.Q280*
LUAD	TCGA-35-5375-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27874644	27874644	Nonsense_Mutation	G	C	p.S1328*
LUAD	TCGA-35-5375-01	EPHB2	ENST00000544305.1,ENST00000374627.1,ENST00000400191.3,ENST00000465676.1,ENST00000374632.3,ENST00000374630.3	chr1	23189529:23189685:23191369:23191705:23208851:23208976,	23191370	23191705	23191570	23191570	Nonsense_Mutation	G	T	p.E390*
LUAD	TCGA-38-4625-01	TTF2	ENST00000369466.4	chr1	117624452:117624569:117626639:117626790:117629038:117629144,	117626640	117626790	117626717	117626717	Nonsense_Mutation	G	T	p.E661*
LUAD	TCGA-38-4625-01	MYRIP	ENST00000475082.1,ENST00000458292.1,ENST00000302541.6,ENST00000425621.1,ENST00000444716.1	chr3	40085540:40085762:40192538:40192675:40204220:40204301,	40192539	40192675	40192632	40192632	Nonsense_Mutation	C	A	p.Y142*
LUAD	TCGA-38-4626-01	MRPL1	ENST00000315567.8	chr4	78815292:78815404:78830419:78830526:78870950:78871032,	78830420	78830526	78830509	78830509	Nonsense_Mutation	C	T	p.Q254*
LUAD	TCGA-38-4628-01	KCNK2	ENST00000467031.1,ENST00000391895.2	chr1	215179197:215179298:215259710:215260021:215297975:215298093,	215259711	215260021	215259842	215259842	Nonsense_Mutation	A	T	p.K60*
LUAD	TCGA-38-4628-01	PPP1R13L	ENST00000418234.2,ENST00000587270.1,ENST00000360957.5	chr19	45882895:45883486:45885784:45885984:45888819:45888876,	45885785	45885984	45885837	45885837	Nonsense_Mutation	C	T	p.W799*
LUAD	TCGA-38-4628-01	MRPL18	ENST00000367034.4,ENST00000476826.1,ENST00000480842.1	chr6	160211978:160212158:160218318:160218550:160219083:160219345,	160218319	160218550	160218467	160218467	Nonsense_Mutation	C	T	p.R130*
LUAD	TCGA-38-4628-01	SHISA5	ENST00000296444.2,ENST00000426002.1,ENST00000444115.1,ENST00000443308.2,ENST00000442747.1,ENST00000465449.1,ENST00000417962.1	chr3	48510166:48510585:48510759:48510972:48511126:48511242,	48510760	48510972	48510922	48510922	Nonsense_Mutation	G	A	p.Q161*
LUAD	TCGA-38-4628-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666998	157666998	Nonsense_Mutation	C	T	p.W259*
LUAD	TCGA-38-4628-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666998	157666998	Nonsense_Mutation	C	T	p.W259*
LUAD	TCGA-38-4628-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666998	157666998	Nonsense_Mutation	C	T	p.W259*
LUAD	TCGA-38-4629-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000554704.1,ENST00000307138.6,ENST00000554652.1	chr14	36211573:36211771:36217790:36218030:36219687:36219735,	36217791	36218030	36217805	36217805	Nonsense_Mutation	C	A	p.E413*
LUAD	TCGA-38-4629-01	TM6SF1	ENST00000565982.1,ENST00000565774.1,ENST00000379384.5,ENST00000322019.9	chr15	83790672:83790755:83791508:83791630:83793423:83793528,	83791509	83791630	83791516	83791516	Nonsense_Mutation	T	A	p.Y163*
LUAD	TCGA-38-4630-01	ACSL3	ENST00000392066.3,ENST00000357430.3	chr2	223783781:223783920:223785997:223786148:223787425:223787549,	223785998	223786148	223786028	223786028	Nonsense_Mutation	C	G	p.S279*
LUAD	TCGA-38-4630-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730435	1730435	Nonsense_Mutation	G	T	p.E436*
LUAD	TCGA-38-4630-01	ARHGAP27	ENST00000442348.1,ENST00000532667.1,ENST00000376922.2,ENST00000455881.1,ENST00000428638.1,ENST00000528384.1	chr17	43481394:43481462:43481634:43481700:43481810:43481894,	43481635	43481700	43481669	43481669	Nonsense_Mutation	C	T	p.W141*
LUAD	TCGA-38-4630-01	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000389645.3,ENST00000533657.1,ENST00000529307.1,ENST00000530820.1	chr11	34112075:34112225:34113452:34113603:34118025:34118043,	34113453	34113603	34113552	34113552	Nonsense_Mutation	C	T	p.Q552*
LUAD	TCGA-38-4631-01	DNAJC5B	ENST00000522619.1,ENST00000276570.5	chr8	66955722:66955846:66963765:66963901:66988894:66989064,	66963766	66963901	66963823	66963823	Nonsense_Mutation	C	A	p.S14*
LUAD	TCGA-38-4631-01	SFTPB	ENST00000409383.1,ENST00000393822.3,ENST00000473692.1,ENST00000342375.3,ENST00000428225.1	chr2	85894228:85894300:85894801:85894929:85895239:85895295,	85894802	85894929	85894864	85894864	Nonsense_Mutation	G	A	p.Q57*
LUAD	TCGA-38-4631-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103358463:103358623:103359130:103359320:103372298:103372418,	103359131	103359320	103359295	103359295	Nonsense_Mutation	C	A	p.G138*
LUAD	TCGA-38-4631-01	MARK2	ENST00000361128.5,ENST00000543220.1,ENST00000413835.2,ENST00000377810.3,ENST00000408948.3,ENST00000513765.2,ENST00000350490.7,ENST00000502399.3,ENST00000377809.4,ENST00000425897.2,ENST00000508192.1,ENST00000509502.2,ENST00000540169.1,ENST00000402010.2,ENST00000315032.8	chr11	63665703:63665752:63666079:63666145:63666234:63666265,	63666080	63666145	63666130	63666130	Nonsense_Mutation	G	T	p.E130*
LUAD	TCGA-38-4631-01	CCDC138	ENST00000295124.4,ENST00000412964.2,ENST00000409529.2	chr2	109410995:109411177:109414883:109415042:109421344:109421464,	109414884	109415042	109415040	109415040	Nonsense_Mutation	G	T	p.E245*
LUAD	TCGA-38-4631-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130409107:130409260:130409451:130409739:130409934:130410222,	130409452	130409739	130409602	130409602	Nonsense_Mutation	G	A	p.Q1003*
LUAD	TCGA-38-4631-01	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119892158:119892317:119899971:119900208:119904145:119904241,	119899972	119900208	119900182	119900182	Nonsense_Mutation	G	T	p.Y241*
LUAD	TCGA-38-4631-01	DCXR	ENST00000580320.1,ENST00000579334.1,ENST00000582074.1,ENST00000581584.1,ENST00000579155.1,ENST00000306869.2,ENST00000578273.1,ENST00000577712.1,ENST00000577532.1,ENST00000582900.1,ENST00000579821.1	chr17	79994289:79994324:79994419:79994519:79994596:79994605,	79994420	79994519	79994492	79994492	Nonsense_Mutation	C	A	p.G126*
LUAD	TCGA-38-4631-01	IGDCC4	ENST00000352385.2	chr15	65694688:65694825:65702515:65702657:65703357:65703423,	65702516	65702657	65702613	65702613	Nonsense_Mutation	C	A	p.E156*
LUAD	TCGA-38-4631-01	SUN1	ENST00000471349.1,ENST00000456758.2,ENST00000493681.1,ENST00000413171.2,ENST00000340926.3	chr7	882842:882869:882977:883157:888054:888058,	882978	883157	883154	883154	Nonsense_Mutation	A	T	p.K277*
LUAD	TCGA-38-4631-01	AIG1	ENST00000275235.4,ENST00000447498.1,ENST00000458219.1,ENST00000357847.4,ENST00000344492.5,ENST00000367601.4	chr6	143486218:143486320:143605246:143605362:143654418:143654430,	143605247	143605362	143605319	143605319	Nonsense_Mutation	G	T	p.G158*
LUAD	TCGA-38-4631-01	IRF6	ENST00000367021.3,ENST00000456314.1	chr1	209969692:209969897:209974584:209974761:209975316:209975388,	209974585	209974761	209974728	209974728	Nonsense_Mutation	T	A	p.K11*
LUAD	TCGA-38-4631-01	TFCP2L1	ENST00000263707.5	chr2	121999934:122000045:122004393:122004546:122005739:122005812,	122004394	122004546	122004483	122004483	Nonsense_Mutation	G	A	p.R190*
LUAD	TCGA-38-4631-01	EPB41L2	ENST00000368128.2,ENST00000530481.1,ENST00000525193.1,ENST00000528282.1,ENST00000529208.1,ENST00000445890.2,ENST00000525271.1,ENST00000392427.3,ENST00000527411.1,ENST00000527659.1,ENST00000337057.3	chr6	131229960:131230003:131247744:131247849:131276244:131276457,	131247745	131247849	131247753	131247753	Nonsense_Mutation	C	A	p.E268*
LUAD	TCGA-38-4631-01	ZNF135	ENST00000439855.2,ENST00000313434.5,ENST00000511556.1	chr19	58570647:58570678:58572947:58573074:58574813:58574909,58571341:58571403:58572947:58573074:58574813:58574909,	58572948	58573074	58572990	58572990	Nonsense_Mutation	G	T	p.E38*
LUAD	TCGA-38-4631-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000577730.1,ENST00000584337.1	chr16	61760997:61761119:61823249:61823386:61851382:61851636,	61823250	61823386	61823358	61823358	Nonsense_Mutation	C	A	p.E436*
LUAD	TCGA-38-4632-01	SHISA4	ENST00000464117.1,ENST00000362011.6	chr1	201859581:201859715:201860528:201860696:201860927:201861265,	201860529	201860696	201860534	201860534	Nonsense_Mutation	G	T	p.E129*
LUAD	TCGA-38-4632-01	PAGE2	ENST00000374968.4	chrX	55116934:55117043:55117764:55117890:55119147:55119275,	55117765	55117890	55117812	55117812	Nonsense_Mutation	G	T	p.E81*
LUAD	TCGA-38-4632-01	LTBP1	ENST00000415140.2	chr2	33500975:33500990:33505105:33505225:33518226:33518349,33500975:33500990:33505105:33505225:33525517:33525640,	33505106	33505225	33505174	33505174	Nonsense_Mutation	C	T	p.Q1021*
LUAD	TCGA-38-4632-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37287723:37287876:37289081:37289193:37291882:37292133,	37289082	37289193	37289111	37289111	Nonsense_Mutation	C	T	p.W556*
LUAD	TCGA-38-4632-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298531	34298531	Nonsense_Mutation	G	A	p.W915*
LUAD	TCGA-38-4632-01	ZMAT4	ENST00000297737.6,ENST00000519406.1	chr8	40438722:40438780:40532222:40532450:40554763:40554856,	40532223	40532450	40532226	40532226	Nonsense_Mutation	T	A	p.R192*
LUAD	TCGA-38-4632-01	STEAP1B	ENST00000406890.2	chr7	22532295:22532348:22532942:22533398:22534390:22534505,	22532943	22533398	22532984	22532984	Nonsense_Mutation	G	A	p.R186*
LUAD	TCGA-38-4632-01	STEAP1B	ENST00000483679.1,ENST00000424363.1,ENST00000439708.1,ENST00000404369.4	chr7	22532295:22532348:22532942:22533455:22534390:22534505,	22532943	22533455	22532984	22532984	Nonsense_Mutation	G	A	p.R186*
LUAD	TCGA-38-6178-01	ACAT1	ENST00000265838.4,ENST00000532792.1,ENST00000531813.1	chr11	108009694:108009768:108010791:108010942:108012331:108012427,	108010792	108010942	108010912	108010912	Nonsense_Mutation	G	T	p.E234*
LUAD	TCGA-38-7271-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205429	236205429	Nonsense_Mutation	C	A	p.E306*
LUAD	TCGA-38-7271-01	WAC	ENST00000345541.6	chr10	28900702:28900851:28903495:28905291:28906585:28906713,	28903496	28905291	28905206	28905206	Nonsense_Mutation	C	G	p.S509*
LUAD	TCGA-38-7271-01	WAC	ENST00000375664.4,ENST00000354911.4,ENST00000375646.1,ENST00000347934.4,ENST00000439676.1	chr10	28903495:28903614:28905101:28905291:28906585:28906713,	28905102	28905291	28905206	28905206	Nonsense_Mutation	C	G	p.S509*
LUAD	TCGA-38-7271-01	LCN2	ENST00000540948.1,ENST00000373017.1,ENST00000277480.2	chr9	130911929:130911942:130912516:130912653:130913916:130913996,	130912517	130912653	130912526	130912526	Nonsense_Mutation	A	T	p.K50*
LUAD	TCGA-38-7271-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833291	82833291	Nonsense_Mutation	C	A	p.S1490*
LUAD	TCGA-44-2655-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47044453:47044603:47044700:47044766:47044840:47045029,	47044701	47044766	47044719	47044719	Nonsense_Mutation	C	T	p.Q707*
LUAD	TCGA-44-2655-01	SEZ6L	ENST00000402979.1,ENST00000404234.3	chr22	26761337:26761532:26769416:26769449:26771540:26771655,26761337:26761532:26769416:26769449:26771543:26771655,	26769417	26769449	26769422	26769422	Nonsense_Mutation	C	T	p.Q934*
LUAD	TCGA-44-2655-01	TAF4	ENST00000252996.4,ENST00000436129.2	chr20	60574038:60574164:60575179:60575310:60575607:60575777,	60575180	60575310	60575248	60575248	Nonsense_Mutation	G	A	p.Q907*
LUAD	TCGA-44-2656-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891215	2891215	Nonsense_Mutation	G	T	p.G364*
LUAD	TCGA-44-2656-01	MX2	ENST00000330714.3,ENST00000482953.1,ENST00000496774.1	chr21	42770911:42770946:42771122:42771264:42773896:42774055,	42771123	42771264	42771258	42771258	Nonsense_Mutation	C	T	p.Q470*
LUAD	TCGA-44-2656-01	TNC	ENST00000350763.4,ENST00000423613.2,ENST00000341037.4	chr9	117826074:117826347:117826925:117827198:117835881:117835920,	117826926	117827198	117826978	117826978	Nonsense_Mutation	A	C	p.Y1145*
LUAD	TCGA-44-2656-01	CD244	ENST00000368033.3	chr1	160808728:160808839:160810999:160811290:160811373:160811691,	160811000	160811290	160811267	160811267	Nonsense_Mutation	C	A	p.E130*
LUAD	TCGA-44-2656-01	CD244	ENST00000368034.4,ENST00000368032.2,ENST00000492063.1	chr1	160808728:160808839:160810999:160811275:160811373:160811691,	160811000	160811275	160811267	160811267	Nonsense_Mutation	C	A	p.E130*
LUAD	TCGA-44-2656-01	INTU	ENST00000503626.1,ENST00000503952.1,ENST00000335251.6	chr4	128629725:128629823:128632067:128632257:128635090:128635248,	128632068	128632257	128632153	128632153	Nonsense_Mutation	G	T	p.E819*
LUAD	TCGA-44-2656-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228523491:228523552:228523900:228523971:228524704:228524827,	228523901	228523971	228523918	228523918	Nonsense_Mutation	C	A	p.S6452*
LUAD	TCGA-44-2656-01	UGDH	ENST00000515021.1,ENST00000316423.6,ENST00000509391.1,ENST00000506179.1,ENST00000514106.1	chr4	39512434:39512481:39515702:39515804:39522970:39523095,	39515703	39515804	39515801	39515801	Nonsense_Mutation	C	A	p.G56*
LUAD	TCGA-44-2656-01	LILRB1	ENST00000396331.1,ENST00000434867.2,ENST00000396327.3,ENST00000396315.1,ENST00000396332.4,ENST00000396321.2,ENST00000396317.1,ENST00000418536.2,ENST00000324602.7	chr19	55145424:55145472:55146091:55146214:55146554:55146630,	55146092	55146214	55146212	55146212	Nonsense_Mutation	C	A	p.S494*
LUAD	TCGA-44-2656-01	LILRB1	ENST00000462628.1	chr19	55145424:55145472:55146038:55146214:55146554:55146630,	55146039	55146214	55146212	55146212	Nonsense_Mutation	C	A	p.S494*
LUAD	TCGA-44-2656-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16095022:16095125:16096903:16097073:16101112:16101126,	16096904	16097073	16096939	16096939	Nonsense_Mutation	C	T	p.R193*
LUAD	TCGA-44-2656-01	NMRK2	ENST00000597889.1,ENST00000168977.2,ENST00000593949.1	chr19	3938704:3938757:3939897:3939969:3941068:3941171,	3939898	3939969	3939950	3939950	Nonsense_Mutation	G	T	p.E126*
LUAD	TCGA-44-2656-01	PROC	ENST00000422777.3,ENST00000409048.1,ENST00000453608.2,ENST00000234071.3	chr2	128180906:128180984:128183660:128183803:128184680:128184798,	128183661	128183803	128183674	128183674	Nonsense_Mutation	T	A	p.C238*
LUAD	TCGA-44-2656-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022088	11022088	Nonsense_Mutation	G	T	p.E68*
LUAD	TCGA-44-2657-01	FYCO1	ENST00000296137.2,ENST00000535325.1	chr3	46021196:46021322:46023061:46023168:46026347:46026487,	46023062	46023168	46023127	46023127	Nonsense_Mutation	C	A	p.E33*
LUAD	TCGA-44-2657-01	SETD4	ENST00000399208.2,ENST00000429161.1,ENST00000443703.1,ENST00000399207.1,ENST00000332131.4,ENST00000424303.1,ENST00000481477.1	chr21	37425886:37425918:37429406:37429502:37431113:37431222,	37429407	37429502	37429497	37429497	Nonsense_Mutation	C	A	p.E27*
LUAD	TCGA-44-2657-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42356876	42356876	Nonsense_Mutation	A	T	p.K350*
LUAD	TCGA-44-2659-01	TRIM69	ENST00000558173.1,ENST00000558329.1,ENST00000560442.1,ENST00000561043.1,ENST00000329464.4,ENST00000561170.1,ENST00000559390.1,ENST00000338264.4	chr15	45051837:45051860:45051945:45052070:45059428:45059641,	45051946	45052070	45052015	45052015	Nonsense_Mutation	C	A	p.Y98*
LUAD	TCGA-44-2659-01	TYRP1	ENST00000381136.2,ENST00000388918.5,ENST00000381137.2	chr9	12704666:12704705:12707996:12708143:12708976:12709235,	12707997	12708143	12708116	12708116	Nonsense_Mutation	G	T	p.G461*
LUAD	TCGA-44-2659-01	AKR1E2	ENST00000298375.7,ENST00000532248.1,ENST00000334019.4,ENST00000474119.1,ENST00000462718.3,ENST00000533295.1,ENST00000345253.5,ENST00000463345.1	chr10	4872876:4873034:4875541:4875658:4877866:4878001,	4875542	4875658	4875556	4875556	Nonsense_Mutation	C	A	p.C74*
LUAD	TCGA-44-2662-01	CNTLN	ENST00000380647.3	chr9	17273730:17273864:17298187:17298350:17309055:17309250,	17298188	17298350	17298312	17298312	Nonsense_Mutation	G	T	p.E370*
LUAD	TCGA-44-2662-01	CETN3	ENST00000283122.3	chr5	89689749:89689924:89695174:89695366:89701501:89701616,	89695175	89695366	89695226	89695226	Nonsense_Mutation	C	A	p.E137*
LUAD	TCGA-44-2662-01	AP4B1	ENST00000369569.1,ENST00000369567.1,ENST00000256658.4	chr1	114437369:114438114:114438378:114438660:114438879:114439087,	114438379	114438660	114438396	114438396	Nonsense_Mutation	G	T	p.S592*
LUAD	TCGA-44-2662-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000265636.5,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68321612:68321725:68326033:68326147:68331770:68331875,	68326034	68326147	68326137	68326137	Nonsense_Mutation	C	T	p.R279*
LUAD	TCGA-44-2665-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131375	202131375	Nonsense_Mutation	G	T	p.E115*
LUAD	TCGA-44-2665-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131375	202131375	Nonsense_Mutation	G	T	p.E115*
LUAD	TCGA-44-2666-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LUAD	TCGA-44-2668-01	FHOD3	ENST00000592128.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000585579.1,ENST00000592930.1,ENST00000591635.1	chr18	34322699:34322819:34323994:34324156:34326907:34327098,	34323995	34324156	34324149	34324149	Nonsense_Mutation	C	A	p.S1170*
LUAD	TCGA-44-2668-01	MACROD2	ENST00000477147.1,ENST00000494602.1,ENST00000490428.1,ENST00000217246.4,ENST00000310348.4	chr20	13982933:13983050:14066266:14066374:14474124:14474154,	14066267	14066374	14066278	14066278	Nonsense_Mutation	C	T	p.Q59*
LUAD	TCGA-44-2668-01	ITGAX	ENST00000268296.4,ENST00000562522.1	chr16	31383917:31383991:31384569:31384711:31388119:31388236,	31384570	31384711	31384649	31384649	Nonsense_Mutation	G	T	p.G816*
LUAD	TCGA-44-2668-01	MICAL2	ENST00000528931.1,ENST00000527546.1,ENST00000256194.4,ENST00000537344.1,ENST00000530691.1,ENST00000342902.5,ENST00000379612.3	chr11	12243190:12243306:12244163:12244290:12244957:12245048,	12244164	12244290	12244189	12244189	Nonsense_Mutation	C	T	p.Q450*
LUAD	TCGA-44-2668-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000398510.3	chr16	53326744:53326964:53330867:53331070:53337631:53338537,	53330868	53331070	53330938	53330938	Nonsense_Mutation	A	T	p.R1861*
LUAD	TCGA-44-2668-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577082	7577082	Nonsense_Mutation	C	A	p.E286*
LUAD	TCGA-44-2668-01	TBC1D1	ENST00000261439.4,ENST00000510573.2,ENST00000508802.1	chr4	38091552:38091738:38097549:38097711:38104619:38104778,	38097550	38097711	38097636	38097636	Nonsense_Mutation	G	T	p.E775*
LUAD	TCGA-44-2668-01	FATE1	ENST00000370350.3	chrX	150885743:150885871:150889866:150889973:150890374:150890453,	150889867	150889973	150889897	150889897	Nonsense_Mutation	A	T	p.R89*
LUAD	TCGA-44-2668-01	PTK2	ENST00000538769.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000340930.3,ENST00000518173.1,ENST00000521250.1,ENST00000395218.2,ENST00000522424.1,ENST00000519465.1,ENST00000521562.1,ENST00000430260.2,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1	chr8	141711041:141711121:141712668:141712806:141716217:141716267,	141712669	141712806	141712746	141712746	Nonsense_Mutation	G	A	p.Q764*
LUAD	TCGA-44-2668-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839147	62839147	Nonsense_Mutation	G	T	p.E200*
LUAD	TCGA-44-3396-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985803	36985803	Nonsense_Mutation	C	T	p.R841*
LUAD	TCGA-44-3398-01	TTC38	ENST00000422713.1,ENST00000381031.3,ENST00000421359.1	chr22	46669794:46669966:46671144:46671318:46674482:46674558,	46671145	46671318	46671251	46671251	Nonsense_Mutation	C	T	p.Q158*
LUAD	TCGA-44-3918-01	TNNT3	ENST00000453458.1,ENST00000381558.1,ENST00000381579.3,ENST00000381561.4,ENST00000446240.1,ENST00000278317.6,ENST00000381557.2,ENST00000381589.3,ENST00000381548.3,ENST00000492075.1,ENST00000381549.3,ENST00000381563.4,ENST00000360603.3,ENST00000397301.1,ENST00000344578.4,ENST00000397304.2	chr11	1951041:1951058:1953698:1953744:1954950:1955067,	1953699	1953744	1953727	1953727	Nonsense_Mutation	G	T	p.E44*
LUAD	TCGA-44-3918-01	DDX24	ENST00000330836.5	chr14	94528820:94528967:94545370:94546093:94547464:94547492,	94545371	94546093	94545842	94545842	Nonsense_Mutation	C	A	p.E83*
LUAD	TCGA-44-3918-01	DDX24	ENST00000555054.1	chr14	94528820:94528967:94545370:94545967:94547464:94547492,	94545371	94545967	94545842	94545842	Nonsense_Mutation	C	A	p.E83*
LUAD	TCGA-44-3918-01	GPC2	ENST00000471717.1,ENST00000292377.2	chr7	99772307:99772388:99773194:99773517:99773829:99773988,	99773195	99773517	99773279	99773279	Nonsense_Mutation	G	T	p.Y188*
LUAD	TCGA-44-3918-01	FBN2	ENST00000508053.1,ENST00000262464.4,ENST00000508989.1	chr5	127728827:127729061:127730814:127730967:127744366:127744492,	127730815	127730967	127730962	127730962	Nonsense_Mutation	T	A	p.R362*
LUAD	TCGA-44-3918-01	MED6	ENST00000256379.5,ENST00000554963.1,ENST00000430055.2	chr14	71052472:71052500:71057982:71058098:71059596:71059632,	71057983	71058098	71058048	71058048	Nonsense_Mutation	G	A	p.Q173*
LUAD	TCGA-44-3918-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175293491:175293655:175299209:175299371:175304846:175304943,	175299210	175299371	175299342	175299342	Nonsense_Mutation	G	A	p.Q1221*
LUAD	TCGA-44-3918-01	ZNF268	ENST00000541009.2,ENST00000536435.2,ENST00000500625.3,ENST00000416488.1,ENST00000228289.5	chr12	133764457:133764658:133768074:133768201:133768493:133768589,	133768075	133768201	133768117	133768117	Nonsense_Mutation	G	T	p.E93*
LUAD	TCGA-44-3918-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17764658	17764658	Nonsense_Mutation	C	A	p.E1653*
LUAD	TCGA-44-3918-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845994	24845994	Nonsense_Mutation	G	T	p.E914*
LUAD	TCGA-44-3918-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000309536.2,ENST00000522181.1	chr8	92355580:92355694:92364037:92364115:92365128:92365224,	92364038	92364115	92364058	92364058	Nonsense_Mutation	C	A	p.C387*
LUAD	TCGA-44-3918-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183829403:183829536:183831943:183832089:183841620:183841679,	183831944	183832089	183832073	183832073	Nonsense_Mutation	G	C	p.S506*
LUAD	TCGA-44-4112-01	SKAP1	ENST00000584924.1,ENST00000581400.2,ENST00000336915.6	chr17	46239830:46239928:46247970:46248021:46257415:46257610,46239830:46239931:46247970:46248021:46257415:46257610,	46247971	46248021	46247980	46247980	Nonsense_Mutation	G	A	p.R290*
LUAD	TCGA-44-4112-01	SENP2	ENST00000413407.1,ENST00000444509.1,ENST00000545472.1,ENST00000427465.2,ENST00000296257.5	chr3	185339613:185339693:185341785:185341870:185344085:185344095,	185341786	185341870	185341817	185341817	Nonsense_Mutation	A	T	p.R520*
LUAD	TCGA-44-5643-01	ZMYM5	ENST00000535942.1	chr13	20409616:20409829:20411795:20411961:20412839:20413125,20409616:20409829:20411795:20411961:20425494:20425588,	20411796	20411961	20411849	20411849	Nonsense_Mutation	T	A	p.K329*
LUAD	TCGA-44-5643-01	ADAMTS16	ENST00000274181.7,ENST00000433402.2	chr5	5235149:5235299:5237081:5237212:5239263:5239300,	5237082	5237212	5237117	5237117	Nonsense_Mutation	G	T	p.G687*
LUAD	TCGA-44-5644-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114279970	114279970	Nonsense_Mutation	C	A	p.S3399*
LUAD	TCGA-44-5644-01	CDH19	ENST00000579658.1,ENST00000262150.2,ENST00000454642.3,ENST00000540086.1	chr18	64211955:64212140:64218330:64218495:64221641:64221761,	64218331	64218495	64218475	64218475	Nonsense_Mutation	T	A	p.K211*
LUAD	TCGA-44-5644-01	DMD	ENST00000359836.1,ENST00000343523.2,ENST00000474231.1,ENST00000541735.1,ENST00000358062.2,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31792076:31792309:31838091:31838200:31854834:31854900,	31838092	31838200	31838176	31838176	Nonsense_Mutation	C	A	p.E2409*
LUAD	TCGA-44-5644-01	GFM1	ENST00000478254.1,ENST00000486715.1,ENST00000478576.1	chr3	158364676:158364736:158366829:158366946:158369884:158370035,	158366830	158366946	158366915	158366915	Nonsense_Mutation	G	T	p.E220*
LUAD	TCGA-44-5644-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000389980.3	chr2	54850615:54850733:54851940:54852099:54853068:54853371,	54851941	54852099	54852007	54852007	Nonsense_Mutation	C	T	p.Q404*
LUAD	TCGA-44-5644-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4,ENST00000570331.1	chr16	20347967:20348049:20348612:20348775:20352412:20352454,	20348613	20348775	20348729	20348729	Nonsense_Mutation	C	A	p.E575*
LUAD	TCGA-44-5644-01	TMEM145	ENST00000598766.1,ENST00000301204.3	chr19	42821021:42821115:42821860:42822033:42824468:42824589,	42821861	42822033	42821921	42821921	Nonsense_Mutation	G	T	p.G345*
LUAD	TCGA-44-5644-01	LRTM1	ENST00000493075.1	chr3	54952359:54952919:54958645:54959242:55000954:55001115,	54958646	54959242	54959164	54959164	Nonsense_Mutation	G	C	p.S29*
LUAD	TCGA-44-5644-01	POP1	ENST00000401707.2	chr8	99129539:99129618:99135563:99135707:99139822:99139990,	99135564	99135707	99135611	99135611	Nonsense_Mutation	C	T	p.Q16*
LUAD	TCGA-44-5644-01	NEK11	ENST00000507910.1,ENST00000510688.1,ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000383366.4,ENST00000508196.1,ENST00000356918.4,ENST00000506695.1,ENST00000511262.1	chr3	130748552:130748722:130799266:130799432:130828646:130828765,	130799267	130799432	130799421	130799421	Nonsense_Mutation	G	T	p.E109*
LUAD	TCGA-44-5645-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573967	7573967	Nonsense_Mutation	G	A	p.Q354*
LUAD	TCGA-44-6144-01	DLG2	ENST00000426717.2,ENST00000330014.6,ENST00000418306.2,ENST00000532653.1,ENST00000376106.3	chr11	83182668:83182770:83183769:83183820:83195171:83195256,83182668:83182770:83183769:83183820:83194295:83194341,	83183770	83183820	83183791	83183791	Nonsense_Mutation	C	A	p.E670*
LUAD	TCGA-44-6144-01	CACNG7	ENST00000222212.2,ENST00000391767.1,ENST00000391766.1	chr19	54416070:54416281:54417753:54417840:54418618:54418759,	54417754	54417840	54417828	54417828	Nonsense_Mutation	G	T	p.E91*
LUAD	TCGA-44-6145-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257679	9257679	Nonsense_Mutation	G	T	p.E1449*
LUAD	TCGA-44-6145-01	VIL1	ENST00000440053.1,ENST00000248444.5	chr2	219292949:219293060:219294007:219294210:219294319:219294398,	219294008	219294210	219294032	219294032	Nonsense_Mutation	C	T	p.R198*
LUAD	TCGA-44-6145-01	RASAL1	ENST00000546727.1	chr12	113554877:113554966:113556932:113557248:113559313:113559443,	113556933	113557248	113557022	113557022	Nonsense_Mutation	C	A	p.E185*
LUAD	TCGA-44-6147-01	TSGA10	ENST00000409564.2	chr2	99634998:99635103:99636742:99636945:99651692:99651902,99634998:99635103:99636742:99636945:99681401:99681587,	99636743	99636945	99636894	99636894	Nonsense_Mutation	G	A	p.Q556*
LUAD	TCGA-44-6147-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557723	210557723	Nonsense_Mutation	G	T	p.E277*
LUAD	TCGA-44-6147-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557723	210557723	Nonsense_Mutation	G	T	p.E277*
LUAD	TCGA-44-6774-01	USP7	ENST00000563961.1,ENST00000344836.4,ENST00000565455.1,ENST00000563085.1,ENST00000535863.1,ENST00000381886.4	chr16	8994998:8995091:8995938:8996044:8996237:8996339,	8995939	8996044	8995984	8995984	Nonsense_Mutation	C	A	p.E668*
LUAD	TCGA-44-6774-01	BRPF3	ENST00000534400.1	chr6	36193047:36193141:36196678:36196833:36198202:36199094,36189944:36190042:36196678:36196833:36198202:36199094,	36196679	36196833	36196766	36196766	Nonsense_Mutation	G	T	p.E1123*
LUAD	TCGA-44-6774-01	TAF1A	ENST00000350027.4,ENST00000366890.1,ENST00000352967.4,ENST00000391882.1	chr1	222734705:222734860:222736514:222736638:222737400:222737467,	222736515	222736638	222736579	222736579	Nonsense_Mutation	C	A	p.G341*
LUAD	TCGA-44-6774-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77471208	77471208	Nonsense_Mutation	C	A	p.E1021*
LUAD	TCGA-44-6774-01	LIPI	ENST00000536861.1	chr21	15558281:15558390:15561354:15561740:15583120:15583166,	15561355	15561740	15561488	15561488	Nonsense_Mutation	A	T	p.L121*
LUAD	TCGA-44-6774-01	XKRX	ENST00000372956.2	chrX	100169287:100170072:100177781:100178050:100182958:100183024,	100177782	100178050	100178004	100178004	Nonsense_Mutation	C	A	p.E141*
LUAD	TCGA-44-6774-01	SERPINB13	ENST00000269489.5,ENST00000431153.1,ENST00000344731.5	chr18	61256889:61256946:61259581:61259710:61260087:61260118,61256889:61256949:61259581:61259710:61260087:61260118,	61259582	61259710	61259708	61259708	Nonsense_Mutation	C	T	p.Q118*
LUAD	TCGA-44-6774-01	POT1	ENST00000607932.1	chr7	124469307:124469396:124475332:124475468:124481026:124481232,124467267:124467359:124475332:124475468:124481026:124481232,	124475333	124475468	124475445	124475445	Nonsense_Mutation	T	A	p.K465*
LUAD	TCGA-44-6775-01	SPATA9	ENST00000477047.2,ENST00000274432.8,ENST00000316087.8	chr5	94999656:94999752:95011115:95011343:95018231:95018320,	95011116	95011343	95011208	95011208	Nonsense_Mutation	G	A	p.Q96*
LUAD	TCGA-44-6776-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589621	67589621	Nonsense_Mutation	G	T	p.E462*
LUAD	TCGA-44-6776-01	ARHGEF25	ENST00000333972.7,ENST00000286494.4	chr12	58007476:58007543:58007798:58007902:58008113:58008183,	58007799	58007902	58007844	58007844	Nonsense_Mutation	C	T	p.R200*
LUAD	TCGA-44-6776-01	FBXL7	ENST00000504595.1,ENST00000329673.7,ENST00000510662.1	chr5	15616091:15616181:15927998:15928610:15936558:15937295,	15927999	15928610	15928306	15928306	Nonsense_Mutation	C	A	p.Y145*
LUAD	TCGA-44-6777-01	CIZ1	ENST00000357558.5,ENST00000277465.4	chr9	130940987:130941183:130941267:130941694:130942693:130942802,	130941268	130941694	130941408	130941408	Nonsense_Mutation	G	A	p.Q360*
LUAD	TCGA-44-6777-01	CIZ1	ENST00000372948.3,ENST00000372954.1	chr9	130940987:130941183:130941351:130941694:130942693:130942802,	130941352	130941694	130941408	130941408	Nonsense_Mutation	G	A	p.Q360*
LUAD	TCGA-44-6777-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1653262	1653262	Nonsense_Mutation	C	A	p.E764*
LUAD	TCGA-44-6777-01	MAPK14	ENST00000229794.4,ENST00000229795.3,ENST00000468133.1	chr6	36070347:36070426:36075231:36075405:36076156:36076286,	36075232	36075405	36075268	36075268	Nonsense_Mutation	C	G	p.S293*
LUAD	TCGA-44-6777-01	LIG1	ENST00000593425.1,ENST00000601091.1,ENST00000263274.7,ENST00000536218.1,ENST00000599165.1,ENST00000594759.1,ENST00000542460.1,ENST00000596549.1,ENST00000600055.1	chr19	48664694:48664764:48665518:48665608:48668806:48668880,	48665519	48665608	48665538	48665538	Nonsense_Mutation	C	A	p.E30*
LUAD	TCGA-44-6777-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14477002:14477072:14479369:14479459:14480027:14480120,	14479370	14479459	14479403	14479403	Nonsense_Mutation	C	T	p.Q2063*
LUAD	TCGA-44-6778-01	FGB	ENST00000509493.1,ENST00000302068.4,ENST00000502545.1	chr4	155488744:155488972:155489532:155489646:155490333:155490459,	155489533	155489646	155489562	155489562	Nonsense_Mutation	G	T	p.E250*
LUAD	TCGA-44-6778-01	FDX1	ENST00000260270.2	chr11	110306562:110306682:110327641:110327771:110333077:110335605,	110327642	110327771	110327731	110327731	Nonsense_Mutation	G	T	p.E134*
LUAD	TCGA-44-6779-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000551127.1,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000546781.1,ENST00000550785.1	chr12	113714807:113714840:113715044:113715169:113715993:113716042,	113715045	113715169	113715147	113715147	Nonsense_Mutation	C	T	p.Q460*
LUAD	TCGA-44-7659-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107683	168107683	Nonsense_Mutation	G	T	p.E3261*
LUAD	TCGA-44-7660-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63175836	63175836	Nonsense_Mutation	C	T	p.Q654*
LUAD	TCGA-44-7660-01	PPFIA1	ENST00000389547.3,ENST00000530294.1,ENST00000253925.7	chr11	70189856:70189998:70194294:70194526:70200406:70200558,	70194295	70194526	70194393	70194393	Nonsense_Mutation	C	G	p.S677*
LUAD	TCGA-44-7660-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574021	7574021	Nonsense_Mutation	C	A	p.E336*
LUAD	TCGA-44-7660-01	PLG	ENST00000308192.9,ENST00000467466.1	chr6	161159569:161159644:161160099:161160240:161162342:161162400,	161160100	161160240	161160114	161160114	Nonsense_Mutation	C	G	p.S631*
LUAD	TCGA-44-7661-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117705847:117705949:117710189:117710364:117715763:117715903,	117710190	117710364	117710192	117710192	Nonsense_Mutation	C	A	p.E613*
LUAD	TCGA-44-7661-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LUAD	TCGA-44-7661-01	SLC22A8	ENST00000336232.2	chr11	62768191:62768295:62782097:62782455:62783200:62783282,	62782098	62782455	62782420	62782420	Nonsense_Mutation	G	T	p.S4*
LUAD	TCGA-44-7661-01	SLC22A8	ENST00000430500.2	chr11	62768191:62768295:62782097:62782434:62783200:62783282,	62782098	62782434	62782420	62782420	Nonsense_Mutation	G	T	p.S4*
LUAD	TCGA-44-7661-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87080938:87081110:87082259:87082451:87083850:87083908,	87082260	87082451	87082309	87082309	Nonsense_Mutation	C	A	p.G163*
LUAD	TCGA-44-7662-01	LRP1B	ENST00000389484.3	chr2	141747100:141747226:141751563:141751704:141762903:141763026,	141751564	141751704	141751666	141751666	Nonsense_Mutation	C	A	p.G848*
LUAD	TCGA-44-7662-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579485	7579485	Nonsense_Mutation	C	A	p.E68*
LUAD	TCGA-44-7662-01	ROPN1L	ENST00000510520.1	chr5	10450063:10450225:10461295:10461471:10471921:10472141,	10461296	10461471	10461347	10461347	Nonsense_Mutation	G	T	p.E157*
LUAD	TCGA-44-7662-01	SH3PXD2A	ENST00000538130.1,ENST00000540321.1,ENST00000420222.1,ENST00000315994.6,ENST00000369774.4,ENST00000355946.2	chr10	105361531:105363546:105365554:105365674:105371337:105371387,	105365555	105365674	105365611	105365611	Nonsense_Mutation	C	A	p.E458*
LUAD	TCGA-44-7662-01	TGFB1	ENST00000221930.5	chr19	41838032:41838186:41847787:41847935:41848074:41848152,	41847788	41847935	41847918	41847918	Nonsense_Mutation	G	A	p.R244*
LUAD	TCGA-44-7667-01	TIAM1	ENST00000541036.1,ENST00000286827.3	chr21	32624057:32624505:32638325:32639299:32649047:32649083,	32638326	32639299	32638884	32638884	Nonsense_Mutation	G	T	p.Y135*
LUAD	TCGA-44-7667-01	PLCB4	ENST00000407043.2,ENST00000378473.3,ENST00000437503.1,ENST00000278655.4,ENST00000334005.3,ENST00000416836.1,ENST00000441846.1	chr20	9198036:9198099:9288446:9288545:9317772:9317853,	9288447	9288545	9288539	9288539	Nonsense_Mutation	C	G	p.Y26*
LUAD	TCGA-44-7667-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726319	71726319	Nonsense_Mutation	G	A	p.R744*
LUAD	TCGA-44-7667-01	ZNF608	ENST00000505686.1	chr5	123979203:123979376:123979936:123980354:123985302:123985390,	123979937	123980354	123980334	123980334	Nonsense_Mutation	C	T	p.W1242*
LUAD	TCGA-44-7667-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158924188	158924188	Nonsense_Mutation	C	T	p.R1165*
LUAD	TCGA-44-7667-01	JAKMIP2	ENST00000265272.5	chr5	147040510:147041008:147051240:147051517:147162018:147162105,	147051241	147051517	147051255	147051255	Nonsense_Mutation	G	A	p.Q39*
LUAD	TCGA-44-7667-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541557	29541557	Nonsense_Mutation	T	A	p.L494*
LUAD	TCGA-44-7667-01	NEK6	ENST00000545174.1,ENST00000373603.1,ENST00000394199.2,ENST00000546191.1,ENST00000373600.3,ENST00000540326.1,ENST00000539416.1,ENST00000454453.1,ENST00000320246.5	chr9	127089616:127089724:127101849:127101944:127109987:127110076,	127101850	127101944	127101941	127101941	Nonsense_Mutation	C	A	p.Y272*
LUAD	TCGA-44-7667-01	FAM227B	ENST00000561116.1	chr15	49881972:49882204:49903411:49903465:49907317:49907368,49880212:49880280:49903411:49903465:49907317:49907368,	49903412	49903465	49903438	49903438	Nonsense_Mutation	C	A	p.E27*
LUAD	TCGA-44-7669-01	KIAA1211	ENST00000503618.1,ENST00000504228.1,ENST00000264229.6	chr4	57138569:57138658:57164379:57164515:57173700:57173731,	57164380	57164515	57164480	57164480	Nonsense_Mutation	C	T	p.Q29*
LUAD	TCGA-44-7669-01	MAP4	ENST00000383737.4,ENST00000426837.2,ENST00000360240.6,ENST00000395734.3	chr3	47958359:47958664:47960208:47960331:47969717:47969792,47958377:47958664:47960208:47960331:47963254:47963368,	47960209	47960331	47960230	47960230	Nonsense_Mutation	C	A	p.E228*
LUAD	TCGA-44-7669-01	OXCT1	ENST00000514723.1	chr5	41749702:41749709:41762212:41762302:41794104:41794180,41749702:41749709:41762212:41762302:41840552:41840613,	41762213	41762302	41762287	41762287	Nonsense_Mutation	C	A	p.G422*
LUAD	TCGA-44-7669-01	SERF2	ENST00000445816.1	chr15	44085172:44085281:44085907:44086134:44086571:44088287,	44085908	44086134	44085915	44085915	Nonsense_Mutation	G	T	p.E42*
LUAD	TCGA-44-7669-01	ETV6	ENST00000396373.4	chr12	12006360:12006495:12022357:12022903:12037378:12037521,	12022358	12022903	12022774	12022774	Nonsense_Mutation	G	T	p.E294*
LUAD	TCGA-44-7669-01	C6orf106	ENST00000374021.1,ENST00000374023.3	chr6	34574577:34574681:34614377:34614575:34622401:34622556,	34614378	34614575	34614531	34614531	Nonsense_Mutation	C	A	p.G120*
LUAD	TCGA-44-7669-01	CCT6A	ENST00000540286.1,ENST00000335503.3,ENST00000275603.4	chr7	56126054:56126214:56126312:56126395:56127236:56127333,	56126313	56126395	56126391	56126391	Nonsense_Mutation	G	T	p.E322*
LUAD	TCGA-44-7669-01	CABIN1	ENST00000398319.2,ENST00000445422.1,ENST00000263119.5,ENST00000454754.1	chr22	24445552:24445682:24447286:24447436:24451335:24451622,	24447287	24447436	24447324	24447324	Nonsense_Mutation	G	T	p.E232*
LUAD	TCGA-44-7669-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616668	116616668	Nonsense_Mutation	T	A	p.K510*
LUAD	TCGA-44-7669-01	XPO1	ENST00000406957.1,ENST00000401558.2,ENST00000404992.2	chr2	61720049:61720188:61721028:61721226:61722589:61722708,	61721029	61721226	61721088	61721088	Nonsense_Mutation	C	A	p.G396*
LUAD	TCGA-44-7669-01	MRS2	ENST00000274747.7,ENST00000543597.1,ENST00000443868.2,ENST00000535061.1,ENST00000378386.3	chr6	24418688:24418806:24423164:24423278:24423811:24424067,	24423165	24423278	24423246	24423246	Nonsense_Mutation	G	T	p.G397*
LUAD	TCGA-44-7670-01	DNAH3	ENST00000261383.3,ENST00000572640.1	chr16	21030945:21031191:21033292:21033422:21035917:21036023,	21033293	21033422	21033322	21033322	Nonsense_Mutation	G	C	p.S1916*
LUAD	TCGA-44-7670-01	KARS	ENST00000562875.1,ENST00000319410.5,ENST00000564578.1,ENST00000302445.3	chr16	75665619:75665753:75668070:75668190:75669577:75669703,	75668071	75668190	75668121	75668121	Nonsense_Mutation	C	A	p.E317*
LUAD	TCGA-44-7670-01	HCCS	ENST00000380762.4,ENST00000321143.4,ENST00000380763.3	chrX	11130138:11130280:11132954:11133106:11135386:11135535,	11132955	11133106	11132993	11132993	Nonsense_Mutation	G	T	p.E47*
LUAD	TCGA-44-7670-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938718	76938718	Nonsense_Mutation	G	T	p.S677*
LUAD	TCGA-44-7670-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9400453:9400556:9401943:9402108:9404394:9404599,	9401944	9402108	9402085	9402085	Nonsense_Mutation	G	T	p.E754*
LUAD	TCGA-44-7670-01	AGMO	ENST00000342526.3	chr7	15458182:15458278:15470629:15470733:15584396:15584548,	15470630	15470733	15470662	15470662	Nonsense_Mutation	T	A	p.R161*
LUAD	TCGA-44-7670-01	ESRRB	ENST00000505752.1,ENST00000261532.7	chr14	76964556:76964795:76965068:76965255:76966205:76966409,	76965069	76965255	76965096	76965096	Nonsense_Mutation	G	T	p.E442*
LUAD	TCGA-44-7670-01	CCNF	ENST00000293968.7,ENST00000397066.4	chr16	2488070:2488124:2489353:2489458:2489749:2489827,	2489354	2489458	2489405	2489405	Nonsense_Mutation	C	T	p.Q216*
LUAD	TCGA-44-7670-01	DGCR8	ENST00000383024.2,ENST00000498171.1,ENST00000351989.3,ENST00000495826.1,ENST00000491892.1,ENST00000407755.1	chr22	20082235:20082318:20093699:20093800:20094114:20094197,	20093700	20093800	20093787	20093787	Nonsense_Mutation	G	T	p.E626*
LUAD	TCGA-44-7670-01	TTC29	ENST00000508306.1,ENST00000513335.1,ENST00000504425.1,ENST00000325106.4,ENST00000398886.4	chr4	147788649:147788735:147795867:147796080:147824695:147824881,	147795868	147796080	147796051	147796051	Nonsense_Mutation	C	A	p.E232*
LUAD	TCGA-44-7670-01	BTRC	ENST00000370187.3,ENST00000370183.2	chr10	103113938:103113985:103221737:103221815:103239124:103239214,103190101:103190209:103221737:103221815:103239124:103239214,	103221738	103221815	103221745	103221745	Nonsense_Mutation	C	A	p.S55*
LUAD	TCGA-44-7670-01	BTRC	ENST00000475200.1	chr10	103190101:103190209:103221720:103221815:103239124:103239214,	103221721	103221815	103221745	103221745	Nonsense_Mutation	C	A	p.S55*
LUAD	TCGA-44-7670-01	KCTD7	ENST00000443322.1	chr7	66093944:66094195:66098261:66098431:66103239:66103378,	66098262	66098431	66098289	66098289	Nonsense_Mutation	G	T	p.G58*
LUAD	TCGA-44-7670-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84568398:84568483:84581843:84582130:84592655:84592785,	84581844	84582130	84582127	84582127	Nonsense_Mutation	G	T	p.G662*
LUAD	TCGA-44-7670-01	TNNT1	ENST00000587758.1,ENST00000589226.1,ENST00000587465.2,ENST00000588981.1,ENST00000356783.5,ENST00000291901.8,ENST00000592920.1,ENST00000585321.2,ENST00000593046.1,ENST00000588147.1	chr19	55652553:55652670:55653224:55653288:55656911:55656933,	55653225	55653288	55653268	55653268	Nonsense_Mutation	A	T	p.L50*
LUAD	TCGA-44-7670-01	TNNT1	ENST00000587089.2	chr19	55652553:55652670:55653224:55653425:55656911:55656933,	55653225	55653425	55653268	55653268	Nonsense_Mutation	A	T	p.L50*
LUAD	TCGA-44-7670-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253785	55253785	Nonsense_Mutation	C	A	p.G484*
LUAD	TCGA-44-7670-01	TECRL	ENST00000381210.3	chr4	65145792:65145917:65146758:65146804:65147191:65147254,	65146759	65146804	65146797	65146797	Nonsense_Mutation	G	T	p.S309*
LUAD	TCGA-44-7670-01	BPIFC	ENST00000300399.3,ENST00000397452.1	chr22	32841621:32841685:32841827:32841983:32843198:32843327,	32841828	32841983	32841872	32841872	Nonsense_Mutation	G	T	p.Y162*
LUAD	TCGA-44-7670-01	GLMN	ENST00000534881.1,ENST00000495852.2,ENST00000370360.3	chr1	92729179:92729289:92730110:92730195:92731975:92732049,	92730111	92730195	92730115	92730115	Nonsense_Mutation	A	T	p.L432*
LUAD	TCGA-44-7670-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1	chr4	15575772:15575949:15581590:15581794:15587779:15587869,	15581591	15581794	15581639	15581639	Nonsense_Mutation	C	T	p.Q1274*
LUAD	TCGA-44-7670-01	TIMM17B	ENST00000376582.3	chrX	48752320:48752384:48754041:48754141:48755006:48755045,	48754042	48754141	48754135	48754135	Nonsense_Mutation	C	T	p.W11*
LUAD	TCGA-44-7670-01	CSGALNACT2	ENST00000374464.1	chr10	43633933:43634015:43650344:43651258:43654162:43654379,	43650345	43651258	43651075	43651075	Nonsense_Mutation	G	T	p.E160*
LUAD	TCGA-44-7670-01	HNRNPUL1	ENST00000595018.1	chr19	41768434:41768487:41774127:41774250:41777986:41778140,	41774128	41774250	41774165	41774165	Nonsense_Mutation	C	A	p.Y111*
LUAD	TCGA-44-7671-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372601	180372601	Nonsense_Mutation	A	T	p.C377*
LUAD	TCGA-44-7671-01	VIM	ENST00000487938.1,ENST00000544301.1,ENST00000469543.1,ENST00000224237.5,ENST00000421459.2	chr10	17272648:17272709:17275585:17275681:17275768:17275930,	17275586	17275681	17275634	17275634	Nonsense_Mutation	G	T	p.E225*
LUAD	TCGA-44-7671-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67937210	67937210	Nonsense_Mutation	G	T	p.E72*
LUAD	TCGA-44-7672-01	ZBBX	ENST00000307529.5,ENST00000455345.2,ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167045729:167045904:167051614:167051773:167068207:167068303,	167051615	167051773	167051692	167051692	Nonsense_Mutation	C	A	p.E204*
LUAD	TCGA-44-7672-01	AK7	ENST00000267584.4	chr14	96912853:96912944:96916138:96916216:96917757:96917907,	96916139	96916216	96916184	96916184	Nonsense_Mutation	A	T	p.R306*
LUAD	TCGA-44-8117-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41245945	41245945	Nonsense_Mutation	C	A	p.G239*
LUAD	TCGA-44-8117-01	WDR59	ENST00000568462.1	chr16	74957847:74957901:74972047:74972164:74976635:74976724,74957847:74957901:74972047:74972164:74982416:74982454,	74972048	74972164	74972089	74972089	Nonsense_Mutation	C	A	p.E204*
LUAD	TCGA-44-8117-01	TMEM255A	ENST00000309720.5,ENST00000371369.4,ENST00000519908.1,ENST00000440464.1	chrX	119425105:119425195:119427843:119427906:119438203:119438268,	119427844	119427906	119427897	119427897	Nonsense_Mutation	C	A	p.G71*
LUAD	TCGA-44-8117-01	AGMO	ENST00000342526.3	chr7	15430295:15430375:15430464:15430530:15433737:15433804,	15430465	15430530	15430514	15430514	Nonsense_Mutation	G	T	p.C231*
LUAD	TCGA-44-8117-01	FNBP1L	ENST00000260506.8,ENST00000370256.4,ENST00000370253.2,ENST00000604705.1	chr1	93913838:93913862:93965024:93965140:93987638:93987692,	93965025	93965140	93965084	93965084	Nonsense_Mutation	T	A	p.Y28*
LUAD	TCGA-44-8117-01	DUOX2	ENST00000603300.1,ENST00000389039.6	chr15	45386760:45386889:45387133:45387289:45387634:45387793,	45387134	45387289	45387160	45387160	Nonsense_Mutation	T	A	p.K1457*
LUAD	TCGA-44-8117-01	HCFC2	ENST00000229330.4,ENST00000544223.2	chr12	104461724:104461885:104473222:104473431:104474523:104474608,	104473223	104473431	104473248	104473248	Nonsense_Mutation	G	T	p.E167*
LUAD	TCGA-44-8119-01	STXBP4	ENST00000398391.2,ENST00000376352.2,ENST00000299341.4,ENST00000434978.2,ENST00000405898.1	chr17	53078168:53078244:53084866:53084958:53108528:53108625,	53084867	53084958	53084905	53084905	Nonsense_Mutation	G	T	p.E205*
LUAD	TCGA-44-8119-01	GRSF1	ENST00000514161.1,ENST00000254799.6,ENST00000545193.1,ENST00000505068.1,ENST00000499044.2,ENST00000502323.1,ENST00000439371.1	chr4	71698023:71698167:71698834:71698990:71701874:71702031,	71698835	71698990	71698943	71698943	Nonsense_Mutation	T	A	p.R188*
LUAD	TCGA-44-8119-01	CEACAM4	ENST00000600925.1	chr19	42128023:42128141:42131974:42132334:42133267:42133442,	42131975	42132334	42132221	42132221	Nonsense_Mutation	C	A	p.E60*
LUAD	TCGA-44-8119-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790610	133790610	Nonsense_Mutation	C	A	p.E1004*
LUAD	TCGA-44-8119-01	ADAP2	ENST00000584989.1	chr17	29280305:29280368:29281495:29281573:29283258:29283380,29276304:29276388:29281495:29281573:29283258:29283380,	29281496	29281573	29281514	29281514	Nonsense_Mutation	A	T	p.K275*
LUAD	TCGA-44-8119-01	SYNPR	ENST00000479198.1,ENST00000478300.1,ENST00000295894.5,ENST00000460711.1,ENST00000493532.1	chr3	63466507:63466632:63542218:63542417:63594800:63594992,	63542219	63542417	63542296	63542296	Nonsense_Mutation	C	A	p.S96*
LUAD	TCGA-44-8119-01	USP8	ENST00000433963.1,ENST00000396444.3,ENST00000307179.4	chr15	50769472:50769696:50773677:50774262:50781997:50782078,50769472:50769696:50773677:50774262:50776471:50776558,	50773678	50774262	50774206	50774206	Nonsense_Mutation	A	T	p.K583*
LUAD	TCGA-44-8119-01	SBF2	ENST00000420722.2,ENST00000533770.1,ENST00000256190.8	chr11	9985319:9985429:9989887:9990092:10011043:10011142,	9989888	9990092	9990005	9990005	Nonsense_Mutation	C	A	p.E495*
LUAD	TCGA-44-8119-01	MGST2	ENST00000515067.1,ENST00000515137.1,ENST00000265498.1,ENST00000503816.1	chr4	140616350:140616421:140624608:140624690:140625169:140625222,	140624609	140624690	140624670	140624670	Nonsense_Mutation	T	A	p.Y97*
LUAD	TCGA-44-8120-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000504021.1,ENST00000515783.1,ENST00000440957.2,ENST00000348417.2,ENST00000349441.2	chr3	129195505:129195644:129196858:129197061:129198627:129198760,	129196859	129197061	129196948	129196948	Nonsense_Mutation	G	T	p.E464*
LUAD	TCGA-44-8120-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706235	33706235	Nonsense_Mutation	C	A	p.E246*
LUAD	TCGA-44-8120-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220502	1220502	Nonsense_Mutation	G	T	p.E199*
LUAD	TCGA-44-8120-01	TIE1	ENST00000433781.2	chr1	43773466:43773595:43774656:43774802:43775058:43775099,43773102:43773243:43774656:43774802:43775058:43775099,	43774657	43774802	43774689	43774689	Nonsense_Mutation	G	T	p.E359*
LUAD	TCGA-44-8120-01	COBL	ENST00000265136.7,ENST00000441453.1,ENST00000395540.2,ENST00000452534.1	chr7	51203854:51204028:51251798:51251896:51258546:51258640,	51251799	51251896	51251816	51251816	Nonsense_Mutation	T	A	p.K256*
LUAD	TCGA-44-8120-01	JPH2	ENST00000372980.3	chr20	42744304:42745026:42747144:42747263:42788257:42789047,	42747145	42747263	42747205	42747205	Nonsense_Mutation	G	A	p.Q410*
LUAD	TCGA-44-8120-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573982	7573982	Nonsense_Mutation	C	A	p.E349*
LUAD	TCGA-44-8120-01	ACTG2	ENST00000438902.2,ENST00000409624.1,ENST00000345517.3,ENST00000409731.3	chr2	74141910:74141998:74143710:74143892:74146558:74146802,	74143711	74143892	74143790	74143790	Nonsense_Mutation	T	A	p.Y295*
LUAD	TCGA-44-8120-01	COBL	ENST00000265136.7,ENST00000445054.1	chr7	51098508:51098606:51111079:51111389:51152862:51152983,	51111080	51111389	51111321	51111321	Nonsense_Mutation	C	A	p.E471*
LUAD	TCGA-44-8120-01	SLC25A18	ENST00000399813.1,ENST00000327451.6	chr22	18065328:18065419:18066181:18066300:18069901:18070067,	18066182	18066300	18066221	18066221	Nonsense_Mutation	T	A	p.C110*
LUAD	TCGA-44-8120-01	SLC30A10	ENST00000536446.1,ENST00000356609.2,ENST00000366926.3	chr1	220088790:220089290:220091596:220091836:220100369:220100447,	220091597	220091836	220091747	220091747	Nonsense_Mutation	C	A	p.E270*
LUAD	TCGA-44-8120-01	CNTRL	ENST00000373855.1,ENST00000373851.2,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123887998:123888214:123898083:123898260:123900822:123900957,	123898084	123898260	123898153	123898153	Nonsense_Mutation	G	T	p.G699*
LUAD	TCGA-44-A479-01	GRN	ENST00000053867.3,ENST00000589265.1,ENST00000586443.1	chr17	42428917:42429163:42429382:42429616:42429708:42429939,	42429383	42429616	42429563	42429563	Nonsense_Mutation	C	T	p.Q454*
LUAD	TCGA-44-A479-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58437916	58437916	Nonsense_Mutation	T	A	p.K545*
LUAD	TCGA-44-A479-01	PRDM2	ENST00000505823.1,ENST00000503842.1	chr1	14099572:14099683:14142921:14143065:14149653:14149914,	14142922	14143065	14142987	14142987	Nonsense_Mutation	G	T	p.G193*
LUAD	TCGA-44-A479-01	IL9R	ENST00000540897.1,ENST00000244174.5,ENST00000424344.3,ENST00000369423.2	chrX	155234113:155234230:155234942:155235144:155235747:155235853,	155234943	155235144	155235138	155235138	Nonsense_Mutation	A	T	p.R238*
LUAD	TCGA-44-A47A-01	PSIP1	ENST00000380738.4,ENST00000380733.4	chr9	15464063:15465578:15466745:15466857:15468627:15468841,	15466746	15466857	15466854	15466854	Nonsense_Mutation	G	C	p.S475*
LUAD	TCGA-44-A47A-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106158268	106158268	Nonsense_Mutation	G	T	p.E1078*
LUAD	TCGA-44-A47A-01	HACE1	ENST00000262903.4,ENST00000369125.2	chr6	105259185:105259268:105280916:105281048:105291097:105291173,	105280917	105281048	105280922	105280922	Nonsense_Mutation	T	A	p.K177*
LUAD	TCGA-44-A47A-01	IDH3B	ENST00000380851.5,ENST00000474315.1,ENST00000380843.4	chr20	2640908:2641011:2641102:2641236:2641342:2641475,	2641103	2641236	2641185	2641185	Nonsense_Mutation	G	A	p.Q195*
LUAD	TCGA-44-A47A-01	IDH3B	ENST00000488299.1	chr20	2640908:2641011:2641102:2641475:2641554:2641615,	2641103	2641475	2641185	2641185	Nonsense_Mutation	G	A	p.Q195*
LUAD	TCGA-44-A47G-01	PNPLA4	ENST00000381042.4,ENST00000537427.1,ENST00000444736.1	chrX	7866803:7868858:7870029:7870182:7880068:7880134,	7870030	7870182	7870101	7870101	Nonsense_Mutation	G	A	p.R187*
LUAD	TCGA-44-A4SS-01	MALT1	ENST00000591792.1,ENST00000348428.3,ENST00000345724.3	chr18	56348401:56348568:56363597:56363719:56367672:56367818,	56363598	56363719	56363625	56363625	Nonsense_Mutation	C	G	p.S135*
LUAD	TCGA-44-A4SS-01	TMEM198	ENST00000344458.2,ENST00000373883.3	chr2	220409482:220409615:220412227:220412803:220413873:220414076,	220412228	220412803	220412305	220412305	Nonsense_Mutation	C	T	p.R82*
LUAD	TCGA-44-A4SS-01	KLHL5	ENST00000508137.2	chr4	39064559:39064655:39077584:39077767:39082722:39082802,39046679:39046716:39077584:39077767:39082722:39082802,	39077585	39077767	39077641	39077641	Nonsense_Mutation	C	G	p.S147*
LUAD	TCGA-44-A4SS-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372402	175372402	Nonsense_Mutation	C	A	p.E284*
LUAD	TCGA-44-A4SS-01	CLPTM1	ENST00000588855.1,ENST00000546079.1,ENST00000541297.2,ENST00000337392.5	chr19	45476343:45476467:45477695:45477854:45480599:45480717,	45477696	45477854	45477825	45477825	Nonsense_Mutation	G	T	p.E133*
LUAD	TCGA-44-A4SS-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375897.3,ENST00000375888.1	chr10	27494126:27494177:27497174:27497374:27499742:27500010,	27497175	27497374	27497291	27497291	Nonsense_Mutation	T	A	p.R430*
LUAD	TCGA-44-A4SU-01	ALAS2	ENST00000477869.1,ENST00000396198.3,ENST00000493869.1,ENST00000335854.4	chrX	55046752:55046937:55047484:55047707:55051150:55051273,	55047485	55047707	55047598	55047598	Nonsense_Mutation	A	T	p.Y175*
LUAD	TCGA-44-A4SU-01	SYNE3	ENST00000557275.1,ENST00000553340.1	chr14	95932267:95932577:95934131:95934304:95942014:95942173,	95934132	95934304	95934167	95934167	Nonsense_Mutation	C	T	p.W94*
LUAD	TCGA-44-A4SU-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579528	7579528	Nonsense_Mutation	C	T	p.W53*
LUAD	TCGA-49-4486-01	MOB1B	ENST00000396051.2,ENST00000309395.2	chr4	71840869:71841003:71844844:71845008:71847696:71847959,	71844845	71845008	71844961	71844961	Nonsense_Mutation	G	T	p.E176*
LUAD	TCGA-49-4487-01	CTC1	ENST00000449476.2,ENST00000315684.8	chr17	8138066:8138244:8138370:8138603:8139148:8139277,	8138371	8138603	8138501	8138501	Nonsense_Mutation	G	A	p.Q437*
LUAD	TCGA-49-4487-01	BYSL	ENST00000230340.4,ENST00000372996.2	chr6	41895172:41895274:41897869:41898008:41898372:41898506,	41897870	41898008	41897940	41897940	Nonsense_Mutation	G	T	p.E168*
LUAD	TCGA-49-4488-01	EIF2AK2	ENST00000233057.4,ENST00000395127.2	chr2	37347101:37347282:37349648:37349807:37353431:37353534,	37349649	37349807	37349652	37349652	Nonsense_Mutation	G	C	p.S355*
LUAD	TCGA-49-4488-01	ANK1	ENST00000520299.1,ENST00000289734.7,ENST00000314214.8	chr8	41513247:41513272:41519393:41519459:41521176:41521260,41519044:41519082:41519393:41519459:41521176:41521260,	41519394	41519459	41519408	41519408	Nonsense_Mutation	G	A	p.Q1844*
LUAD	TCGA-49-4488-01	ANK1	ENST00000522543.1,ENST00000347528.4	chr8	41519044:41519082:41519318:41519459:41521176:41521260,41513247:41513272:41519318:41519459:41521176:41521260,	41519319	41519459	41519408	41519408	Nonsense_Mutation	G	A	p.Q1844*
LUAD	TCGA-49-4488-01	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148925149:148925404:148926997:148927171:148927953:148928166,	148926998	148927171	148927062	148927062	Nonsense_Mutation	G	T	p.Y239*
LUAD	TCGA-49-4490-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LUAD	TCGA-49-4490-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16208622:16208933:16215831:16216031:16218645:16218772,	16215832	16216031	16215937	16215937	Nonsense_Mutation	C	T	p.R1176*
LUAD	TCGA-49-4494-01	UBR7	ENST00000416753.1,ENST00000013070.6,ENST00000553674.1	chr14	93685557:93685707:93686594:93686757:93688658:93688720,	93686595	93686757	93686679	93686679	Nonsense_Mutation	C	T	p.Q349*
LUAD	TCGA-49-4501-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626245	82626245	Nonsense_Mutation	G	A	p.R130*
LUAD	TCGA-49-4505-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	206991433:206991568:206992520:206992696:206994811:206994966,	206992521	206992696	206992595	206992595	Nonsense_Mutation	G	A	p.Q604*
LUAD	TCGA-49-4506-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50597218:50597480:50600840:50600957:50605329:50605502,	50600841	50600957	50600930	50600930	Nonsense_Mutation	C	A	p.G996*
LUAD	TCGA-49-4506-01	KIAA0232	ENST00000307659.5,ENST00000503069.1,ENST00000425103.1	chr4	6858890:6858957:6860151:6860233:6862627:6862666,	6860152	6860233	6860175	6860175	Nonsense_Mutation	G	T	p.E154*
LUAD	TCGA-49-4506-01	XYLT1	ENST00000261381.6	chr16	17195625:17202874:17211502:17211836:17221522:17221718,	17211503	17211836	17211812	17211812	Nonsense_Mutation	C	A	p.E750*
LUAD	TCGA-49-4506-01	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28574048	28574048	Nonsense_Mutation	C	T	p.R158*
LUAD	TCGA-49-4507-01	CUL5	ENST00000531427.1,ENST00000526303.1	chr11	107879985:107880098:107904527:107904637:107916996:107917096,	107904528	107904637	107904543	107904543	Nonsense_Mutation	C	T	p.Q14*
LUAD	TCGA-49-4514-01	SCAP	ENST00000320017.6,ENST00000545718.1	chr3	47463931:47464026:47465422:47465535:47466974:47467101,47463931:47464026:47465422:47465535:47476497:47476627,	47465423	47465535	47465464	47465464	Nonsense_Mutation	G	C	p.S370*
LUAD	TCGA-49-4514-01	F13B	ENST00000367412.1	chr1	197019826:197020009:197021763:197021964:197024844:197025027,	197021764	197021964	197021821	197021821	Nonsense_Mutation	C	A	p.E500*
LUAD	TCGA-49-4514-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2	chr2	55873549:55873621:55874481:55874588:55882034:55882088,	55874482	55874588	55874526	55874526	Nonsense_Mutation	C	A	p.E520*
LUAD	TCGA-49-4514-01	APPBP2	ENST00000083182.3,ENST00000590244.1	chr17	58556522:58556632:58571826:58571978:58577759:58577848,	58571827	58571978	58571907	58571907	Nonsense_Mutation	G	C	p.S100*
LUAD	TCGA-49-4514-01	BEND6	ENST00000370746.3	chr6	56846508:56846728:56857175:56857353:56879930:56879958,	56857176	56857353	56857323	56857323	Nonsense_Mutation	C	T	p.R90*
LUAD	TCGA-49-6742-01	RPL5	ENST00000497519.1,ENST00000370321.3	chr1	93303012:93303190:93306107:93306196:93307322:93307419,	93306108	93306196	93306114	93306114	Nonsense_Mutation	G	T	p.E238*
LUAD	TCGA-49-6742-01	ZNF532	ENST00000588956.1,ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000592249.1,ENST00000591230.1,ENST00000336078.4,ENST00000589131.1	chr18	56646286:56646399:56648701:56648849:56651203:56651326,	56648702	56648849	56648817	56648817	Nonsense_Mutation	G	T	p.E1127*
LUAD	TCGA-49-6742-01	CCDC25	ENST00000521220.1,ENST00000522915.1,ENST00000539095.1,ENST00000520202.1,ENST00000356537.4,ENST00000519509.1,ENST00000520486.1	chr8	27593679:27593762:27597988:27598034:27605593:27605796,	27597989	27598034	27598009	27598009	Nonsense_Mutation	C	A	p.E193*
LUAD	TCGA-49-6743-01	PROC	ENST00000419985.1,ENST00000431364.1	chr2	128177518:128177588:128178893:128179025:128180492:128180517,	128178894	128179025	128179008	128179008	Nonsense_Mutation	C	T	p.Q95*
LUAD	TCGA-49-6743-01	PROC	ENST00000422777.3,ENST00000409048.1,ENST00000427769.1,ENST00000453608.2,ENST00000442644.1,ENST00000429925.1,ENST00000474030.1,ENST00000234071.3	chr2	128177518:128177588:128178858:128179025:128180492:128180517,	128178859	128179025	128179008	128179008	Nonsense_Mutation	C	T	p.Q95*
LUAD	TCGA-49-6743-01	LEMD3	ENST00000308330.2	chr12	65637228:65637249:65639448:65639554:65639640:65639719,	65639449	65639554	65639480	65639480	Nonsense_Mutation	C	T	p.Q807*
LUAD	TCGA-49-6743-01	SPG11	ENST00000427534.2,ENST00000261866.7	chr15	44864880:44865018:44865744:44865943:44867099:44867239,	44865745	44865943	44865871	44865871	Nonsense_Mutation	G	A	p.Q2027*
LUAD	TCGA-49-6743-01	TNFRSF9	ENST00000377507.3	chr1	7993221:7993356:7995072:7995203:7997749:7997816,	7995073	7995203	7995187	7995187	Nonsense_Mutation	T	A	p.K144*
LUAD	TCGA-49-6743-01	EPHB1	ENST00000493838.1,ENST00000398015.3	chr3	134885783:134885848:134898701:134898824:134911417:134911665,	134898702	134898824	134898724	134898724	Nonsense_Mutation	C	G	p.Y594*
LUAD	TCGA-49-6743-01	GTF2A2	ENST00000559706.1	chr15	59934412:59934461:59944404:59944525:59949604:59949674,59942867:59942972:59944404:59944525:59949604:59949674,59942867:59942963:59944404:59944525:59949604:59949674,	59944405	59944525	59944431	59944431	Nonsense_Mutation	G	A	p.Q16*
LUAD	TCGA-49-6743-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021492	42021492	Nonsense_Mutation	C	A	p.S1263*
LUAD	TCGA-49-6743-01	CCAR1	ENST00000536012.1,ENST00000543719.1,ENST00000535016.1,ENST00000483264.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000543225.1	chr10	70515232:70515293:70516029:70516240:70517050:70517055,	70516030	70516240	70516155	70516155	Nonsense_Mutation	C	G	p.S584*
LUAD	TCGA-49-6743-01	MYO5A	ENST00000399231.3,ENST00000358212.6,ENST00000399233.2,ENST00000356338.6,ENST00000553916.1	chr15	52645801:52645855:52646067:52646211:52652164:52652278,	52646068	52646211	52646177	52646177	Nonsense_Mutation	G	C	p.S1153*
LUAD	TCGA-49-6744-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3	chr20	37174885:37175073:37177331:37177438:37179713:37179866,	37177332	37177438	37177415	37177415	Nonsense_Mutation	A	T	p.R996*
LUAD	TCGA-49-6744-01	ACTG2	ENST00000409624.1,ENST00000345517.3,ENST00000442912.1	chr2	74128411:74128564:74129486:74129615:74135799:74135910,	74129487	74129615	74129499	74129499	Nonsense_Mutation	G	T	p.G47*
LUAD	TCGA-49-6744-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377968	77377968	Nonsense_Mutation	G	A	p.Q1207*
LUAD	TCGA-49-6744-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511383	169511383	Nonsense_Mutation	C	T	p.W987*
LUAD	TCGA-49-6744-01	EEF1B2	ENST00000392221.1,ENST00000455150.1,ENST00000392222.2,ENST00000236957.5,ENST00000445505.1	chr2	207025610:207025856:207026069:207026196:207026761:207026801,207025311:207025434:207026069:207026196:207026761:207026801,	207026070	207026196	207026077	207026077	Nonsense_Mutation	G	T	p.G71*
LUAD	TCGA-49-6744-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179561736:179561982:179562594:179563002:179564762:179564953,	179562595	179563002	179562702	179562702	Nonsense_Mutation	G	T	p.G114*
LUAD	TCGA-49-6745-01	MAP3K8	ENST00000263056.1,ENST00000375321.1,ENST00000542547.1	chr10	30739186:30739448:30740566:30740673:30747012:30747165,	30740567	30740673	30740626	30740626	Nonsense_Mutation	C	T	p.Q276*
LUAD	TCGA-49-6745-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117232235:117232711:117234983:117235112:117242879:117242917,	117234984	117235112	117235031	117235031	Nonsense_Mutation	G	A	p.W846*
LUAD	TCGA-49-6761-01	DCTN1	ENST00000409240.1,ENST00000454119.1,ENST00000417090.1,ENST00000434055.1,ENST00000361874.3,ENST00000458655.1,ENST00000409567.3,ENST00000409868.1,ENST00000394003.3	chr2	74604558:74604593:74604774:74604853:74605126:74605372,	74604775	74604853	74604792	74604792	Nonsense_Mutation	G	C	p.S114*
LUAD	TCGA-49-6761-01	CHD6	ENST00000373233.3,ENST00000309279.7	chr20	40143558:40143591:40161688:40162209:40246978:40247014,40143558:40143591:40161688:40162209:40179943:40179999,	40161689	40162209	40161984	40161984	Nonsense_Mutation	C	A	p.G87*
LUAD	TCGA-49-6761-01	STAU1	ENST00000371828.3,ENST00000340954.7,ENST00000371802.1,ENST00000437404.2,ENST00000371792.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47752369:47752468:47768118:47768284:47770469:47770608,	47768119	47768284	47768130	47768130	Nonsense_Mutation	C	A	p.E86*
LUAD	TCGA-49-6767-01	HSPB7	ENST00000311890.9,ENST00000375718.4	chr1	16341993:16342254:16343568:16343702:16344259:16344320,	16343569	16343702	16343586	16343586	Nonsense_Mutation	C	A	p.E106*
LUAD	TCGA-49-6767-01	HSPB7	ENST00000406363.2	chr1	16341993:16342254:16343568:16343714:16344259:16344320,	16343569	16343714	16343586	16343586	Nonsense_Mutation	C	A	p.E106*
LUAD	TCGA-49-6767-01	HSPB7	ENST00000487046.1	chr1	16341993:16342254:16343568:16343717:16344259:16344320,	16343569	16343717	16343586	16343586	Nonsense_Mutation	C	A	p.E106*
LUAD	TCGA-49-6767-01	HSPB7	ENST00000463576.1	chr1	16341993:16342254:16343583:16343717:16344259:16344320,	16343584	16343717	16343586	16343586	Nonsense_Mutation	C	A	p.E106*
LUAD	TCGA-49-6767-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218713343	218713343	Nonsense_Mutation	G	A	p.Q508*
LUAD	TCGA-49-6767-01	PLEKHB2	ENST00000403716.1,ENST00000303908.3,ENST00000409279.1,ENST00000439822.2,ENST00000234115.6,ENST00000404460.1,ENST00000482225.1,ENST00000409612.1,ENST00000409158.1,ENST00000438882.2	chr2	131878514:131878551:131883325:131883478:131884256:131884359,	131883326	131883478	131883346	131883346	Nonsense_Mutation	A	T	p.K20*
LUAD	TCGA-49-6767-01	NEK4	ENST00000496822.1	chr3	52800331:52800391:52802353:52802582:52804669:52804872,	52802354	52802582	52802578	52802578	Nonsense_Mutation	C	A	p.E46*
LUAD	TCGA-49-6767-01	NEK4	ENST00000383721.4	chr3	52800331:52800391:52802353:52802620:52804669:52804872,	52802354	52802620	52802578	52802578	Nonsense_Mutation	C	A	p.E46*
LUAD	TCGA-49-6767-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
LUAD	TCGA-49-6767-01	ZIC4	ENST00000525172.2,ENST00000473123.1,ENST00000484399.1,ENST00000425731.3,ENST00000383075.3	chr3	147108717:147109033:147113638:147114256:147120514:147120599,	147113639	147114256	147114033	147114033	Nonsense_Mutation	G	T	p.Y98*
LUAD	TCGA-49-6767-01	TIMMDC1	ENST00000492164.1,ENST00000494664.1	chr3	119222805:119222868:119236051:119236162:119242452:119242477,119219541:119219707:119236051:119236162:119242452:119242477,119217427:119217774:119236051:119236162:119242452:119242477,119232487:119232566:119236051:119236162:119242452:119242477,	119236052	119236162	119236107	119236107	Nonsense_Mutation	C	T	p.Q218*
LUAD	TCGA-49-6767-01	KIAA1324L	ENST00000490995.1,ENST00000474609.1,ENST00000394714.2,ENST00000297222.6,ENST00000450689.2,ENST00000423294.1,ENST00000416314.1	chr7	86542341:86542520:86544038:86544176:86547757:86547860,	86544039	86544176	86544146	86544146	Nonsense_Mutation	C	A	p.E542*
LUAD	TCGA-50-5045-01	AGRN	ENST00000379370.2	chr1	978917:979112:979202:979403:979488:979637,	979203	979403	979211	979211	Nonsense_Mutation	G	T	p.G603*
LUAD	TCGA-50-5045-01	ITGBL1	ENST00000376180.3,ENST00000376162.3,ENST00000545560.2	chr13	102235565:102235706:102250502:102250649:102344934:102345051,	102250503	102250649	102250508	102250508	Nonsense_Mutation	G	T	p.G292*
LUAD	TCGA-50-5045-01	STAC	ENST00000457375.2,ENST00000434649.1	chr3	36484888:36485132:36527625:36527741:36534642:36534721,	36527626	36527741	36527655	36527655	Nonsense_Mutation	G	T	p.E201*
LUAD	TCGA-50-5045-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578224	7578224	Nonsense_Mutation	T	A	p.R209*
LUAD	TCGA-50-5045-01	FH	ENST00000366560.3	chr1	241663736:241663890:241665742:241665870:241667341:241667545,	241665743	241665870	241665847	241665847	Nonsense_Mutation	C	A	p.E378*
LUAD	TCGA-50-5045-01	CD1B	ENST00000368168.3	chr1	158299324:158299438:158299641:158299920:158300585:158300815,	158299642	158299920	158299789	158299789	Nonsense_Mutation	C	A	p.E154*
LUAD	TCGA-50-5049-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049695	69049695	Nonsense_Mutation	C	A	p.S474*
LUAD	TCGA-50-5049-01	SPEF2	ENST00000509059.1,ENST00000282469.6,ENST00000440995.2,ENST00000356031.3	chr5	35641686:35641785:35644456:35644627:35646768:35646909,	35644457	35644627	35644577	35644577	Nonsense_Mutation	G	T	p.E179*
LUAD	TCGA-50-5049-01	MPP4	ENST00000409143.1	chr2	202549786:202549868:202550641:202550773:202552013:202552094,202549786:202549868:202550641:202550773:202554924:202555002,	202550642	202550773	202550695	202550695	Nonsense_Mutation	C	A	p.E147*
LUAD	TCGA-50-5049-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449967	85449967	Nonsense_Mutation	A	T	p.K466*
LUAD	TCGA-50-5049-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171906573:171906684:171910270:171910363:171911592:171911682,	171910271	171910363	171910294	171910294	Nonsense_Mutation	C	A	p.G189*
LUAD	TCGA-50-5049-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
LUAD	TCGA-50-5049-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214815375	214815375	Nonsense_Mutation	G	T	p.E1232*
LUAD	TCGA-50-5049-01	ARHGEF17	ENST00000263674.3	chr11	73070878:73070997:73071364:73071578:73072132:73072206,	73071365	73071578	73071467	73071467	Nonsense_Mutation	G	T	p.E1437*
LUAD	TCGA-50-5049-01	CENPP	ENST00000375587.3	chr9	95094451:95094633:95099822:95099911:95107980:95108069,	95099823	95099911	95099903	95099903	Nonsense_Mutation	G	T	p.E124*
LUAD	TCGA-50-5049-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636435	32636435	Nonsense_Mutation	G	A	p.Q477*
LUAD	TCGA-50-5049-01	ZNF93	ENST00000588146.1	chr19	20011869:20011900:20027368:20027464:20043990:20044083,	20027369	20027464	20027413	20027413	Nonsense_Mutation	G	T	p.G59*
LUAD	TCGA-50-5051-01	DDI2	ENST00000486680.1,ENST00000480945.1	chr1	15953163:15953293:15956819:15957056:15959933:15960060,	15956820	15957056	15956966	15956966	Nonsense_Mutation	C	T	p.R139*
LUAD	TCGA-50-5051-01	PCK2	ENST00000396973.4,ENST00000216780.4	chr14	24563974:24564054:24566100:24566346:24567411:24567437,24563565:24563643:24566100:24566346:24567411:24567437,	24566101	24566346	24566321	24566321	Nonsense_Mutation	C	T	p.R84*
LUAD	TCGA-50-5066-01	CALM1	ENST00000544280.2,ENST00000553542.1,ENST00000356978.4,ENST00000447653.3,ENST00000557020.1,ENST00000553964.1	chr14	90867676:90867746:90870205:90870312:90870722:90870840,	90870206	90870312	90870298	90870298	Nonsense_Mutation	C	T	p.R91*
LUAD	TCGA-50-5066-02	CCNYL1	ENST00000339882.5,ENST00000452312.1	chr2	208602134:208602170:208606946:208607066:208611770:208611937,	208606947	208607066	208606965	208606965	Nonsense_Mutation	G	T	p.E180*
LUAD	TCGA-50-5066-02	DNAH7	ENST00000312428.6	chr2	196723197:196723528:196726440:196726670:196728872:196729745,	196726441	196726670	196726445	196726445	Nonsense_Mutation	T	A	p.R2578*
LUAD	TCGA-50-5066-02	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139626109:139626163:139628243:139628297:139629156:139629201,	139628244	139628297	139628257	139628257	Nonsense_Mutation	A	T	p.L1304*
LUAD	TCGA-50-5072-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910726	62910726	Nonsense_Mutation	C	G	p.S292*
LUAD	TCGA-50-5930-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71654172	71654172	Nonsense_Mutation	C	T	p.Q1725*
LUAD	TCGA-50-5930-01	SENP5	ENST00000419026.1,ENST00000323460.5,ENST00000489744.1,ENST00000445299.2	chr3	196626909:196626933:196627235:196627283:196630403:196630481,	196627236	196627283	196627254	196627254	Nonsense_Mutation	G	T	p.E593*
LUAD	TCGA-50-5930-01	RALB	ENST00000449649.1,ENST00000447591.1,ENST00000272519.5,ENST00000412383.1,ENST00000420510.1,ENST00000474855.2	chr2	121036193:121036354:121043449:121043658:121047155:121047168,	121043450	121043658	121043513	121043513	Nonsense_Mutation	G	T	p.E60*
LUAD	TCGA-50-5930-01	RABEP2	ENST00000358201.4,ENST00000544477.1,ENST00000357573.6	chr16	28917339:28917517:28919929:28920085:28922208:28922307,	28919930	28920085	28920049	28920049	Nonsense_Mutation	C	A	p.E376*
LUAD	TCGA-50-5930-01	NALCN	ENST00000251127.6	chr13	101733877:101733997:101735159:101735234:101735442:101735549,	101735160	101735234	101735162	101735162	Nonsense_Mutation	C	A	p.E1255*
LUAD	TCGA-50-5930-01	LMNB1	ENST00000504788.1,ENST00000261366.5,ENST00000460265.1	chr5	126161679:126161799:126168385:126168493:126171914:126172263,	126168386	126168493	126168413	126168413	Nonsense_Mutation	A	T	p.K547*
LUAD	TCGA-50-5930-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485054	35485054	Nonsense_Mutation	C	A	p.G110*
LUAD	TCGA-50-5930-01	LGALS13	ENST00000600141.1	chr19	40093176:40093223:40095830:40096028:40097862:40097899,	40095831	40096028	40095951	40095951	Nonsense_Mutation	G	T	p.E76*
LUAD	TCGA-50-5930-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000404621.1	chr12	124848224:124848345:124856567:124857156:124862782:124862930,	124856568	124857156	124856713	124856713	Nonsense_Mutation	C	A	p.E888*
LUAD	TCGA-50-5930-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77413235	77413235	Nonsense_Mutation	C	A	p.E347*
LUAD	TCGA-50-5930-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706778	33706778	Nonsense_Mutation	C	A	p.G65*
LUAD	TCGA-50-5930-01	DCDC1	ENST00000597505.1,ENST00000437348.1,ENST00000342355.4	chr11	31125194:31125316:31128343:31128507:31131806:31131908,	31128344	31128507	31128346	31128346	Nonsense_Mutation	G	T	p.Y583*
LUAD	TCGA-50-5930-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000348332.3,ENST00000405141.1	chr2	24888617:24888784:24896234:24896332:24905819:24905997,	24896235	24896332	24896315	24896315	Nonsense_Mutation	G	T	p.G113*
LUAD	TCGA-50-5930-01	LUM	ENST00000546642.1	chr12	91497936:91498096:91501894:91502464:91505174:91505216,	91501895	91502464	91502039	91502039	Nonsense_Mutation	C	A	p.E240*
LUAD	TCGA-50-5930-01	LUM	ENST00000548071.1	chr12	91497936:91498096:91501894:91502060:91505174:91505216,	91501895	91502060	91502039	91502039	Nonsense_Mutation	C	A	p.E240*
LUAD	TCGA-50-5930-01	GC	ENST00000504199.1,ENST00000513476.1,ENST00000273951.8,ENST00000503472.1	chr4	72620127:72620225:72620694:72620824:72622428:72622586,	72620695	72620824	72620763	72620763	Nonsense_Mutation	C	A	p.E366*
LUAD	TCGA-50-5931-01	MTHFD1L	ENST00000367321.3,ENST00000441122.1	chr6	151243340:151243438:151247257:151247431:151257939:151258051,	151247258	151247431	151247409	151247409	Nonsense_Mutation	G	T	p.G412*
LUAD	TCGA-50-5931-01	COL21A1	ENST00000535941.1,ENST00000370819.1,ENST00000244728.5,ENST00000467045.1	chr6	55923962:55924040:55924815:55925016:55925538:55925593,	55924816	55925016	55924964	55924964	Nonsense_Mutation	G	T	p.C820*
LUAD	TCGA-50-5931-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91*
LUAD	TCGA-50-5931-01	CD48	ENST00000368046.3	chr1	160648535:160648921:160650991:160651258:160654676:160654979,	160650992	160651258	160651121	160651121	Nonsense_Mutation	C	A	p.E175*
LUAD	TCGA-50-5931-01	TBC1D19	ENST00000264866.4,ENST00000502873.1,ENST00000511789.1	chr4	26741485:26741595:26744129:26744221:26750032:26750148,	26744130	26744221	26744202	26744202	Nonsense_Mutation	C	T	p.R434*
LUAD	TCGA-50-5931-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60193880	60193880	Nonsense_Mutation	C	A	p.E508*
LUAD	TCGA-50-5931-01	PRICKLE3	ENST00000540849.1,ENST00000453382.1,ENST00000536904.1,ENST00000376317.3	chrX	49033534:49033551:49034341:49034528:49034620:49034824,	49034342	49034528	49034397	49034397	Nonsense_Mutation	G	T	p.C300*
LUAD	TCGA-50-5932-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000437626.1,ENST00000348831.4	chr21	46604837:46605006:46624469:46624651:46640750:46640885,	46624470	46624651	46624492	46624492	Nonsense_Mutation	G	T	p.G570*
LUAD	TCGA-50-5933-01	RPN2	ENST00000237530.6,ENST00000373632.4	chr20	35812621:35812776:35826799:35826895:35832287:35832363,35812621:35812776:35826799:35826895:35827452:35827628,	35826800	35826895	35826893	35826893	Nonsense_Mutation	G	T	p.E101*
LUAD	TCGA-50-5933-01	UBE2Q2	ENST00000338677.4,ENST00000267938.4,ENST00000426727.2,ENST00000561851.1,ENST00000569423.1	chr15	76165768:76165909:76168527:76168612:76170301:76170362,	76168528	76168612	76168549	76168549	Nonsense_Mutation	C	T	p.Q204*
LUAD	TCGA-50-5933-01	SECISBP2	ENST00000534113.2,ENST00000375807.3	chr9	91934566:91934712:91940341:91940591:91940811:91940953,	91940342	91940591	91940394	91940394	Nonsense_Mutation	C	T	p.Q79*
LUAD	TCGA-50-5933-01	MEGF10	ENST00000274473.6,ENST00000503335.2	chr5	126758383:126758464:126769054:126769201:126770378:126770513,	126769055	126769201	126769092	126769092	Nonsense_Mutation	G	A	p.W577*
LUAD	TCGA-50-5933-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57110843	57110843	Nonsense_Mutation	T	A	p.K1491*
LUAD	TCGA-50-5933-01	C7orf26	ENST00000359073.5	chr7	6629774:6630106:6631333:6631498:6634065:6634231,	6631334	6631498	6631427	6631427	Nonsense_Mutation	G	T	p.G115*
LUAD	TCGA-50-5933-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62194170:62194373:62199135:62199242:62200855:62201003,	62199136	62199242	62199167	62199167	Nonsense_Mutation	G	T	p.E270*
LUAD	TCGA-50-5935-01	SLFN13	ENST00000532210.1,ENST00000526861.1,ENST00000530782.1,ENST00000542635.1,ENST00000360502.2,ENST00000533791.1,ENST00000285013.6,ENST00000534689.1	chr17	33769118:33769305:33770807:33770939:33771633:33771720,	33770808	33770939	33770904	33770904	Nonsense_Mutation	G	A	p.Q368*
LUAD	TCGA-50-5935-01	USP48	ENST00000529637.1	chr1	22032959:22033082:22033236:22033400:22041881:22041950,	22033237	22033400	22033296	22033296	Nonsense_Mutation	G	A	p.Q677*
LUAD	TCGA-50-5935-01	USP48	ENST00000400301.1,ENST00000308271.9,ENST00000374732.3	chr1	22032959:22033082:22033236:22033361:22041881:22041950,	22033237	22033361	22033296	22033296	Nonsense_Mutation	G	A	p.Q677*
LUAD	TCGA-50-5936-01	SMARCA4	ENST00000590574.1,ENST00000344626.4,ENST00000589677.1,ENST00000429416.3,ENST00000358026.2,ENST00000450717.3,ENST00000591545.1,ENST00000541122.2,ENST00000413806.3,ENST00000444061.3	chr19	11098341:11098600:11099992:11100119:11101825:11101999,	11099993	11100119	11100021	11100021	Nonsense_Mutation	C	T	p.Q383*
LUAD	TCGA-50-5936-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610574	10610574	Nonsense_Mutation	G	A	p.Q46*
LUAD	TCGA-50-5941-01	KLK2	ENST00000597439.1	chr19	51379994:51380014:51380140:51380301:51381659:51381861,	51380141	51380301	51380292	51380292	Nonsense_Mutation	G	T	p.E220*
LUAD	TCGA-50-5941-01	KLK2	ENST00000358049.4	chr19	51379994:51380014:51380127:51380301:51381659:51381861,	51380128	51380301	51380292	51380292	Nonsense_Mutation	G	T	p.E220*
LUAD	TCGA-50-5941-01	P2RX2	ENST00000350048.5	chr12	133196043:133196160:133196429:133196505:133196585:133196682,	133196430	133196505	133196474	133196474	Nonsense_Mutation	C	A	p.C142*
LUAD	TCGA-50-5941-01	SPAG9	ENST00000505279.1,ENST00000357122.4	chr17	49133772:49133843:49156944:49157065:49197714:49198095,	49156945	49157065	49156969	49156969	Nonsense_Mutation	T	A	p.K134*
LUAD	TCGA-50-5941-01	VANGL2	ENST00000368061.2	chr1	160385851:160385972:160388791:160389399:160390200:160390337,	160388792	160389399	160388876	160388876	Nonsense_Mutation	A	T	p.K93*
LUAD	TCGA-50-5941-01	BTD	ENST00000303498.5	chr3	15643307:15643401:15676930:15677195:15683414:15683564,	15676931	15677195	15677046	15677046	Nonsense_Mutation	G	T	p.E34*
LUAD	TCGA-50-5941-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32366522:32366645:32380904:32381075:32382698:32382827,	32380905	32381075	32380907	32380907	Nonsense_Mutation	T	A	p.K1775*
LUAD	TCGA-50-5941-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7639094:7639409:7639489:7639582:7639954:7640269,	7639490	7639582	7639558	7639558	Nonsense_Mutation	G	T	p.S692*
LUAD	TCGA-50-5942-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47142964	47142964	Nonsense_Mutation	G	A	p.Q1667*
LUAD	TCGA-50-5942-01	CCNC	ENST00000520371.1,ENST00000519617.1,ENST00000524049.1,ENST00000523799.1,ENST00000520429.1,ENST00000484049.2,ENST00000518714.1,ENST00000523961.1,ENST00000486428.2,ENST00000369220.4,ENST00000523985.1	chr6	99993080:99993106:99994270:99994350:99997383:99997448,	99994271	99994350	99994324	99994324	Nonsense_Mutation	G	A	p.Q209*
LUAD	TCGA-50-5944-01	TECRL	ENST00000381210.3	chr4	65145792:65145917:65146758:65146804:65147191:65147254,	65146759	65146804	65146797	65146797	Nonsense_Mutation	G	T	p.S309*
LUAD	TCGA-50-5944-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577085	7577085	Nonsense_Mutation	C	A	p.E285*
LUAD	TCGA-50-5946-01	MAP3K13	ENST00000443863.1,ENST00000438053.1,ENST00000424227.1,ENST00000446828.1,ENST00000535426.1,ENST00000265026.3	chr3	185195113:185195184:185198019:185198317:185200142:185200244,	185198020	185198317	185198315	185198315	Nonsense_Mutation	G	T	p.E933*
LUAD	TCGA-50-5946-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098309	144098309	Nonsense_Mutation	G	T	p.S225*
LUAD	TCGA-50-5946-01	USP25	ENST00000400183.2,ENST00000285679.6,ENST00000285681.2	chr21	17191016:17191165:17196357:17196485:17197284:17197380,	17196358	17196485	17196427	17196427	Nonsense_Mutation	G	T	p.G384*
LUAD	TCGA-50-5946-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338836	19338836	Nonsense_Mutation	G	T	p.G803*
LUAD	TCGA-50-5946-01	TTC27	ENST00000317907.4	chr2	33036090:33036288:33037570:33037682:33042523:33042624,	33037571	33037682	33037582	33037582	Nonsense_Mutation	C	A	p.C736*
LUAD	TCGA-50-5946-01	ARMC3	ENST00000468003.1	chr10	23247998:23248067:23248327:23248503:23257234:23257418,	23248328	23248503	23248496	23248496	Nonsense_Mutation	T	A	p.L177*
LUAD	TCGA-50-5946-01	C8B	ENST00000535057.1,ENST00000543257.1,ENST00000371237.4	chr1	57409368:57409497:57411493:57411734:57415227:57415425,	57411494	57411734	57411654	57411654	Nonsense_Mutation	G	T	p.Y263*
LUAD	TCGA-50-6590-01	SLC39A14	ENST00000240095.6,ENST00000289952.5,ENST00000517370.1,ENST00000381237.1	chr8	22269549:22269719:22272292:22272415:22273281:22273470,	22272293	22272415	22272314	22272314	Nonsense_Mutation	G	T	p.E217*
LUAD	TCGA-50-6590-01	POF1B	ENST00000373145.3,ENST00000262753.4	chrX	84561186:84561339:84562168:84562282:84563129:84563222,	84562169	84562282	84562267	84562267	Nonsense_Mutation	T	A	p.K356*
LUAD	TCGA-50-6590-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106954	168106954	Nonsense_Mutation	C	T	p.Q3018*
LUAD	TCGA-50-6590-01	ANGPT4	ENST00000546022.1	chr20	868960:869082:870855:871011:896548:896960,	870856	871011	870864	870864	Nonsense_Mutation	C	A	p.E153*
LUAD	TCGA-50-6590-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548502	165548502	Nonsense_Mutation	G	T	p.S107*
LUAD	TCGA-50-6590-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099600	168099600	Nonsense_Mutation	G	A	p.W566*
LUAD	TCGA-50-6590-01	MLIP	ENST00000274897.5,ENST00000502396.1	chr6	54066902:54067031:54095511:54095715:54122105:54122159,	54095512	54095715	54095709	54095709	Nonsense_Mutation	C	A	p.C972*
LUAD	TCGA-50-6590-01	SLC25A47	ENST00000557052.1,ENST00000361529.3	chr14	100793524:100793707:100795062:100795381:100795701:100796473,	100795063	100795381	100795348	100795348	Nonsense_Mutation	G	T	p.E205*
LUAD	TCGA-50-6590-01	TLN2	ENST00000489129.1,ENST00000306829.6,ENST00000494733.1,ENST00000561311.1	chr15	63097798:63097984:63102123:63102231:63111714:63111820,	63102124	63102231	63102154	63102154	Nonsense_Mutation	G	T	p.E2232*
LUAD	TCGA-50-6590-01	AADACL3	ENST00000359318.5	chr1	12776117:12776347:12779476:12779693:12780884:12780948,	12779477	12779693	12779534	12779534	Nonsense_Mutation	C	T	p.Q19*
LUAD	TCGA-50-6590-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67699249	67699249	Nonsense_Mutation	G	T	p.G601*
LUAD	TCGA-50-6590-01	GUCY1A2	ENST00000282249.2,ENST00000526355.2	chr11	106647164:106647308:106680718:106681204:106810185:106810904,	106680719	106681204	106680949	106680949	Nonsense_Mutation	T	A	p.K488*
LUAD	TCGA-50-6590-01	AUTS2	ENST00000403018.2	chr7	69583117:69583219:69599521:69599557:69755353:69755607,	69599522	69599557	69599543	69599543	Nonsense_Mutation	G	T	p.G216*
LUAD	TCGA-50-6591-01	MRPS15	ENST00000373116.5	chr1	36921787:36921979:36923523:36923582:36926292:36926374,	36923524	36923582	36923551	36923551	Nonsense_Mutation	A	T	p.Y139*
LUAD	TCGA-50-6592-01	MAP2K4	ENST00000353533.5,ENST00000602686.1,ENST00000415385.3,ENST00000602375.1,ENST00000602811.1,ENST00000536413.2,ENST00000602305.1	chr17	12028610:12028688:12032455:12032604:12043155:12043201,	12032456	12032604	12032561	12032561	Nonsense_Mutation	G	T	p.E344*
LUAD	TCGA-50-6593-01	FAM20B	ENST00000263733.4	chr1	178995030:178995233:179012849:179013359:179019413:179019451,	179012850	179013359	179013192	179013192	Nonsense_Mutation	G	A	p.W70*
LUAD	TCGA-50-6593-01	VNN2	ENST00000326499.6,ENST00000525270.1	chr6	133072283:133072657:133073599:133073888:133076981:133077174,	133073600	133073888	133073886	133073886	Nonsense_Mutation	G	C	p.Y180*
LUAD	TCGA-50-6593-01	VNN2	ENST00000418593.2	chr6	133072283:133072657:133073811:133073888:133076981:133077174,	133073812	133073888	133073886	133073886	Nonsense_Mutation	G	C	p.Y180*
LUAD	TCGA-50-6594-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131274340:131274395:131283059:131283193:131293914:131293974,	131283060	131283193	131283074	131283074	Nonsense_Mutation	G	T	p.C349*
LUAD	TCGA-50-6594-01	PLGRKT	ENST00000472145.1,ENST00000223864.2	chr9	5381862:5382031:5431896:5431983:5436568:5436694,5361780:5361888:5431896:5431983:5436568:5436694,	5431897	5431983	5431905	5431905	Nonsense_Mutation	G	A	p.R25*
LUAD	TCGA-50-6594-01	ORC2	ENST00000474877.1,ENST00000234296.2	chr2	201798598:201798697:201800421:201800615:201802628:201802689,	201800422	201800615	201800586	201800586	Nonsense_Mutation	C	A	p.E182*
LUAD	TCGA-50-6594-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449759	155449759	Nonsense_Mutation	T	A	p.K968*
LUAD	TCGA-50-6594-01	ACSS1	ENST00000542618.1,ENST00000432802.2,ENST00000537502.1,ENST00000323482.4	chr20	25002024:25002172:25003575:25003728:25004101:25004277,	25003576	25003728	25003719	25003719	Nonsense_Mutation	T	A	p.K190*
LUAD	TCGA-50-6594-01	SLC35A2	ENST00000376529.3	chrX	48760537:48760742:48762022:48762169:48763668:48763820,	48762023	48762169	48762039	48762039	Nonsense_Mutation	C	A	p.E383*
LUAD	TCGA-50-6594-01	SLC35A2	ENST00000247138.5	chrX	48760537:48760742:48762022:48762759:48763668:48763820,	48762023	48762759	48762039	48762039	Nonsense_Mutation	C	A	p.E383*
LUAD	TCGA-50-6594-01	G3BP1	ENST00000394123.3	chr5	151151514:151151597:151166163:151166276:151169883:151169965,	151166164	151166276	151166233	151166233	Nonsense_Mutation	C	T	p.Q18*
LUAD	TCGA-50-6594-01	G3BP1	ENST00000520177.1,ENST00000522367.1,ENST00000519832.1,ENST00000522761.1,ENST00000356245.3,ENST00000543466.1	chr5	151151514:151151597:151166132:151166276:151169883:151169965,	151166133	151166276	151166233	151166233	Nonsense_Mutation	C	T	p.Q18*
LUAD	TCGA-50-6594-01	EFCAB1	ENST00000262103.3	chr8	49643098:49643203:49643906:49644062:49647652:49647791,	49643907	49644062	49644012	49644012	Nonsense_Mutation	C	A	p.G37*
LUAD	TCGA-50-6594-01	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82125934	82125934	Nonsense_Mutation	C	A	p.G90*
LUAD	TCGA-50-6594-01	FSIP1	ENST00000350221.3	chr15	40005644:40005782:40018789:40018948:40030291:40030402,	40018790	40018948	40018855	40018855	Nonsense_Mutation	C	A	p.E329*
LUAD	TCGA-50-6595-01	MYO16	ENST00000457511.2,ENST00000357550.2,ENST00000356711.2	chr13	109707393:109707474:109707737:109707943:109753132:109753235,	109707738	109707943	109707855	109707855	Nonsense_Mutation	C	T	p.Q1061*
LUAD	TCGA-50-6597-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186056574:186056777:186057063:186057145:186057276:186057408,	186057064	186057145	186057109	186057109	Nonsense_Mutation	G	T	p.G3137*
LUAD	TCGA-50-6597-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911194	29911194	Nonsense_Mutation	C	T	p.Q165*
LUAD	TCGA-50-6673-01	CRB1	ENST00000538660.1,ENST00000484075.1,ENST00000535699.1,ENST00000543483.1,ENST00000475659.1,ENST00000367400.3	chr1	197313410:197313606:197316469:197316609:197325960:197326143,	197316470	197316609	197316538	197316538	Nonsense_Mutation	G	A	p.W306*
LUAD	TCGA-50-7109-01	EIF2AK2	ENST00000233057.4,ENST00000395127.2	chr2	37347101:37347282:37349648:37349807:37353431:37353534,	37349649	37349807	37349800	37349800	Nonsense_Mutation	C	A	p.E306*
LUAD	TCGA-50-7109-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806904	22806904	Nonsense_Mutation	G	T	p.Y326*
LUAD	TCGA-50-8457-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281217	142281217	Nonsense_Mutation	T	A	p.K343*
LUAD	TCGA-50-8457-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603771	111603771	Nonsense_Mutation	C	T	p.R283*
LUAD	TCGA-50-8459-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000514350.1,ENST00000505766.1	chr5	75902003:75902128:75906844:75907008:75923234:75923321,	75906845	75907008	75907006	75907006	Nonsense_Mutation	G	T	p.G507*
LUAD	TCGA-50-8459-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806021	22806021	Nonsense_Mutation	G	A	p.Q621*
LUAD	TCGA-50-8459-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92130820:92130987:92131203:92131393:92132354:92132378,	92131204	92131393	92131237	92131237	Nonsense_Mutation	G	A	p.R795*
LUAD	TCGA-53-7624-01	GPR143	ENST00000380929.2	chrX	9727371:9727466:9728756:9728866:9754281:9754337,9727371:9727466:9728756:9728866:9733607:9734004,	9728757	9728866	9728837	9728837	Nonsense_Mutation	C	A	p.G94*
LUAD	TCGA-53-7624-01	P2RX1	ENST00000225538.3,ENST00000572418.1	chr17	3802227:3802318:3802927:3803055:3806495:3806637,	3802928	3803055	3802963	3802963	Nonsense_Mutation	G	T	p.Y280*
LUAD	TCGA-53-7624-01	SPIDR	ENST00000521214.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48203641:48203726:48308935:48309186:48352884:48352959,48203641:48203726:48308935:48309186:48320422:48320523,48206455:48206619:48308935:48309186:48320422:48320523,	48308936	48309186	48309095	48309095	Nonsense_Mutation	A	T	p.K229*
LUAD	TCGA-53-7624-01	FGD4	ENST00000546442.1	chr12	32729199:32729383:32734893:32735401:32751430:32751520,32717070:32717223:32734893:32735401:32751430:32751520,	32734894	32735401	32735366	32735366	Nonsense_Mutation	G	T	p.E189*
LUAD	TCGA-53-7624-01	NUDT12	ENST00000507423.1,ENST00000230792.2	chr5	102890440:102890554:102891631:102891799:102894579:102895169,	102891632	102891799	102891788	102891788	Nonsense_Mutation	G	A	p.Q270*
LUAD	TCGA-53-7624-01	C2CD5	ENST00000544930.1,ENST00000537643.1,ENST00000396028.2,ENST00000536386.1,ENST00000545552.1,ENST00000333957.4,ENST00000542676.1,ENST00000446597.1,ENST00000540245.1,ENST00000539615.1	chr12	22623830:22623845:22624332:22624422:22624900:22624999,	22624333	22624422	22624344	22624344	Nonsense_Mutation	C	A	p.E783*
LUAD	TCGA-53-7624-01	SELE	ENST00000367774.1,ENST00000367782.4,ENST00000367777.1,ENST00000367776.1,ENST00000333360.7,ENST00000367779.4,ENST00000367781.4	chr1	169698628:169698814:169699572:169699758:169700975:169701083,	169699573	169699758	169699709	169699709	Nonsense_Mutation	G	T	p.C193*
LUAD	TCGA-53-7624-01	PKMYT1	ENST00000431515.2,ENST00000440027.2,ENST00000575981.1,ENST00000574730.1,ENST00000573944.1,ENST00000382240.5,ENST00000574385.1,ENST00000262300.8	chr16	3024000:3024158:3024245:3024418:3024550:3024657,	3024246	3024418	3024317	3024317	Nonsense_Mutation	G	A	p.Q361*
LUAD	TCGA-53-7624-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190531351	190531351	Nonsense_Mutation	G	T	p.G165*
LUAD	TCGA-53-7624-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372391	175372391	Nonsense_Mutation	G	T	p.Y287*
LUAD	TCGA-53-7624-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688270	60688270	Nonsense_Mutation	C	A	p.E593*
LUAD	TCGA-53-7624-01	BCL11A	ENST00000537768.1	chr2	60679711:60679801:60687816:60688879:60689416:60689559,	60687817	60688879	60688270	60688270	Nonsense_Mutation	C	A	p.E593*
LUAD	TCGA-53-7624-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688270	60688270	Nonsense_Mutation	C	A	p.E593*
LUAD	TCGA-53-7624-01	HYAL1	ENST00000457214.2	chr3	50338418:50338508:50339487:50340054:50340896:50341004,	50339488	50340054	50340020	50340020	Nonsense_Mutation	G	C	p.S123*
LUAD	TCGA-53-7624-01	HYAL1	ENST00000395143.2	chr3	50337912:50338231:50339487:50340411:50340896:50341004,	50339488	50340411	50340020	50340020	Nonsense_Mutation	G	C	p.S123*
LUAD	TCGA-53-7624-01	DOT1L	ENST00000398665.3	chr19	2208933:2208975:2210398:2210509:2210619:2210854,	2210399	2210509	2210435	2210435	Nonsense_Mutation	G	T	p.E348*
LUAD	TCGA-53-7624-01	SGCD	ENST00000435422.3,ENST00000337851.4,ENST00000517913.1,ENST00000447401.1	chr5	155771498:155771687:155935610:155935712:156016240:156016244,	155935611	155935712	155935677	155935677	Nonsense_Mutation	C	T	p.Q86*
LUAD	TCGA-53-7626-01	SOX5	ENST00000536911.1	chr12	23793745:23793831:23818377:23818501:23887617:23887649,	23818378	23818501	23818489	23818489	Nonsense_Mutation	G	A	p.Q261*
LUAD	TCGA-53-7626-01	SOX5	ENST00000546136.1,ENST00000535530.1,ENST00000537393.1,ENST00000541536.1,ENST00000309359.1,ENST00000367206.3,ENST00000545921.1,ENST00000451604.2,ENST00000536629.1,ENST00000381381.2	chr12	23793745:23793831:23818377:23818498:23887617:23887649,	23818378	23818498	23818489	23818489	Nonsense_Mutation	G	A	p.Q261*
LUAD	TCGA-53-7626-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539651	187539651	Nonsense_Mutation	C	A	p.E2697*
LUAD	TCGA-53-7626-01	PICALM	ENST00000529016.1	chr11	85685824:85685855:85692171:85692271:85692787:85692818,85670079:85670103:85692171:85692271:85692787:85692818,	85692172	85692271	85692255	85692255	Nonsense_Mutation	G	A	p.Q559*
LUAD	TCGA-53-7813-01	MFN1	ENST00000357390.4,ENST00000263969.5,ENST00000471841.1,ENST00000474903.1,ENST00000280653.7	chr3	179082905:179083013:179085226:179085380:179085823:179085891,	179085227	179085380	179085233	179085233	Nonsense_Mutation	A	T	p.R254*
LUAD	TCGA-53-7813-01	U2SURP	ENST00000488497.3,ENST00000480029.1,ENST00000493598.2,ENST00000467348.1,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142761963:142762118:142769780:142769891:142772517:142772624,	142769781	142769891	142769829	142769829	Nonsense_Mutation	A	T	p.K456*
LUAD	TCGA-53-7813-01	UROC1	ENST00000290868.2,ENST00000383579.3	chr3	126218899:126218997:126219537:126219717:126220060:126220123,	126219538	126219717	126219611	126219611	Nonsense_Mutation	G	A	p.Q358*
LUAD	TCGA-53-A4EZ-01	ZIC4	ENST00000525172.2,ENST00000473123.1,ENST00000484399.1,ENST00000425731.3,ENST00000383075.3	chr3	147108717:147109033:147113638:147114256:147120514:147120599,	147113639	147114256	147113970	147113970	Nonsense_Mutation	G	C	p.Y119*
LUAD	TCGA-53-A4EZ-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372342	175372342	Nonsense_Mutation	G	A	p.R304*
LUAD	TCGA-53-A4EZ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106649	168106649	Nonsense_Mutation	C	G	p.S2916*
LUAD	TCGA-55-1592-01	MMS22L	ENST00000369251.2,ENST00000275053.4	chr6	97594420:97594763:97597728:97597896:97599646:97599743,	97597729	97597896	97597755	97597755	Nonsense_Mutation	C	T	p.W1208*
LUAD	TCGA-55-1592-01	DCDC1	ENST00000597505.1,ENST00000452803.1	chr11	31287053:31287147:31312193:31312399:31327161:31327324,	31312194	31312399	31312214	31312214	Nonsense_Mutation	C	A	p.G314*
LUAD	TCGA-55-1592-01	MBD1	ENST00000591416.1,ENST00000424334.2,ENST00000398495.2,ENST00000457839.2,ENST00000590208.1,ENST00000398493.1,ENST00000585595.1,ENST00000353909.3,ENST00000347968.3,ENST00000585672.1,ENST00000269468.5,ENST00000382948.5	chr18	47799217:47799325:47799703:47799841:47799933:47799985,	47799704	47799841	47799766	47799766	Nonsense_Mutation	C	A	p.E508*
LUAD	TCGA-55-1592-01	MBD1	ENST00000589541.1	chr18	47799217:47799325:47799703:47799796:47799933:47799985,	47799704	47799796	47799766	47799766	Nonsense_Mutation	C	A	p.E508*
LUAD	TCGA-55-1592-01	RTN4IP1	ENST00000369063.3	chr6	107031202:107031295:107035553:107035737:107040038:107040175,	107035554	107035737	107035616	107035616	Nonsense_Mutation	G	A	p.R310*
LUAD	TCGA-55-1592-01	PPP1R13B	ENST00000202556.9,ENST00000554136.1,ENST00000557082.1,ENST00000555734.1	chr14	104245091:104245158:104251131:104251251:104263707:104263855,	104251132	104251251	104251168	104251168	Nonsense_Mutation	G	A	p.R81*
LUAD	TCGA-55-1592-01	CUL2	ENST00000374742.1,ENST00000374746.1,ENST00000374754.4,ENST00000374748.1,ENST00000374749.3,ENST00000602371.1,ENST00000374751.3,ENST00000537177.1	chr10	35324099:35324224:35327847:35328010:35333493:35333604,	35327848	35328010	35327986	35327986	Nonsense_Mutation	C	A	p.E247*
LUAD	TCGA-55-1594-01	EBF3	ENST00000355311.5,ENST00000368648.3	chr10	131641400:131641466:131646655:131646744:131665404:131665531,	131646656	131646744	131646712	131646712	Nonsense_Mutation	G	A	p.Q349*
LUAD	TCGA-55-1594-01	ZNF566	ENST00000460937.1,ENST00000452939.1,ENST00000427002.1,ENST00000454319.1	chr19	36964233:36964360:36967450:36967518:36980375:36980408,36964233:36964360:36967450:36967518:36980387:36980420,	36967451	36967518	36967453	36967453	Nonsense_Mutation	G	A	p.Q3*
LUAD	TCGA-55-1594-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000216487.7	chr14	93107582:93107674:93117926:93119420:93125505:93125814,	93117927	93119420	93118640	93118640	Nonsense_Mutation	C	T	p.Q416*
LUAD	TCGA-55-1595-01	SEPT6	ENST00000489216.1,ENST00000394617.2,ENST00000394610.1,ENST00000360156.7,ENST00000354416.3,ENST00000343984.5,ENST00000394616.4,ENST00000354228.4	chrX	118767322:118767455:118770989:118771158:118774654:118774751,	118770990	118771158	118771036	118771036	Nonsense_Mutation	C	A	p.E304*
LUAD	TCGA-55-1595-01	PTER	ENST00000423462.2	chr10	16479361:16479489:16526335:16526815:16528350:16528616,16478982:16479046:16526335:16526815:16528350:16528616,	16526336	16526815	16526805	16526805	Nonsense_Mutation	C	G	p.S141*
LUAD	TCGA-55-1595-01	PLIN2	ENST00000276914.2	chr9	19118318:19118453:19119647:19119829:19120877:19121163,	19119648	19119829	19119764	19119764	Nonsense_Mutation	C	A	p.G221*
LUAD	TCGA-55-1596-01	LRRC7	ENST00000035383.5,ENST00000310961.5	chr1	70486687:70486812:70488808:70489057:70493853:70494054,	70488809	70489057	70488886	70488886	Nonsense_Mutation	C	A	p.C508*
LUAD	TCGA-55-5899-01	GHRHR	ENST00000326139.2,ENST00000461390.1,ENST00000409904.3	chr7	31011645:31011710:31013599:31013753:31014043:31014104,	31013600	31013753	31013715	31013715	Nonsense_Mutation	C	G	p.S174*
LUAD	TCGA-55-5899-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000478503.2,ENST00000514152.1	chr4	152065371:152065440:152069073:152069338:152070651:152070713,152065061:152065202:152069073:152069338:152070651:152070713,	152069074	152069338	152069310	152069310	Nonsense_Mutation	G	A	p.Q336*
LUAD	TCGA-55-5899-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82837721	82837721	Nonsense_Mutation	G	T	p.E2967*
LUAD	TCGA-55-5899-01	GALC	ENST00000544807.2,ENST00000555000.1	chr14	88400242:88400343:88406248:88406325:88407738:88407902,	88406249	88406325	88406293	88406293	Nonsense_Mutation	C	A	p.E623*
LUAD	TCGA-55-5899-01	COLGALT2	ENST00000367520.3,ENST00000361927.4,ENST00000546159.1	chr1	183914565:183914698:183920140:183920247:183923895:183923972,	183920141	183920247	183920145	183920145	Nonsense_Mutation	C	A	p.G378*
LUAD	TCGA-55-5899-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7230139	7230139	Nonsense_Mutation	G	T	p.E603*
LUAD	TCGA-55-5899-01	DHX15	ENST00000336812.4,ENST00000512903.1,ENST00000508032.1	chr4	24529382:24529664:24531223:24531393:24534486:24534573,	24531224	24531393	24531295	24531295	Nonsense_Mutation	C	T	p.W733*
LUAD	TCGA-55-5899-01	C2CD3	ENST00000538625.1,ENST00000334126.7	chr11	73744874:73745323:73748522:73748743:73753098:73753205,	73748523	73748743	73748715	73748715	Nonsense_Mutation	G	A	p.Q1897*
LUAD	TCGA-55-6642-01	GPX8	ENST00000506123.1	chr5	54456022:54456071:54456821:54457083:54459882:54459959,54456157:54456224:54456821:54457083:54459882:54459959,	54456822	54457083	54456928	54456928	Nonsense_Mutation	T	A	p.L104*
LUAD	TCGA-55-6642-01	GPX8	ENST00000511617.1	chr5	54456157:54456224:54456879:54457083:54459882:54459959,	54456880	54457083	54456928	54456928	Nonsense_Mutation	T	A	p.L104*
LUAD	TCGA-55-6642-01	PKD2L1	ENST00000318222.3,ENST00000353274.3,ENST00000528248.1	chr10	102056736:102056965:102057138:102057363:102058318:102058572,	102057139	102057363	102057200	102057200	Nonsense_Mutation	G	A	p.R299*
LUAD	TCGA-55-6712-01	CRISPLD1	ENST00000517786.1,ENST00000523524.1	chr8	75898160:75898480:75924667:75924786:75925124:75925257,75912408:75912644:75924667:75924786:75925124:75925257,	75924668	75924786	75924672	75924672	Nonsense_Mutation	G	A	p.W88*
LUAD	TCGA-55-6712-01	TARBP1	ENST00000462259.1,ENST00000040877.1	chr1	234528161:234528298:234529107:234529232:234529391:234529583,	234529108	234529232	234529176	234529176	Nonsense_Mutation	G	A	p.Q1498*
LUAD	TCGA-55-6712-01	TARBP1	ENST00000483404.1	chr1	234528161:234528298:234529107:234529222:234529391:234529583,	234529108	234529222	234529176	234529176	Nonsense_Mutation	G	A	p.Q1498*
LUAD	TCGA-55-6712-01	PLEKHG5	ENST00000535355.1,ENST00000377732.1,ENST00000400913.1,ENST00000340850.5,ENST00000489097.1,ENST00000377737.2,ENST00000487949.1,ENST00000537245.1,ENST00000377748.1,ENST00000377728.3,ENST00000400915.3	chr1	6527564:6527632:6527884:6528646:6529101:6529301,	6527885	6528646	6528641	6528641	Nonsense_Mutation	G	C	p.S829*
LUAD	TCGA-55-6712-01	PLEKHG5	ENST00000377725.1,ENST00000544978.1	chr1	6527902:6527958:6528158:6528646:6529101:6529301,	6528159	6528646	6528641	6528641	Nonsense_Mutation	G	C	p.S829*
LUAD	TCGA-55-6712-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175348687:175348873:175355167:175355437:175360423:175360574,	175355168	175355437	175355363	175355363	Nonsense_Mutation	G	A	p.R528*
LUAD	TCGA-55-6968-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74506913	74506913	Nonsense_Mutation	C	A	p.E568*
LUAD	TCGA-55-6968-01	NAMPT	ENST00000222553.3	chr7	105894809:105894950:105902033:105902153:105903837:105904063,	105902034	105902153	105902110	105902110	Nonsense_Mutation	G	C	p.S338*
LUAD	TCGA-55-6968-01	IDH3B	ENST00000488299.1	chr20	2640908:2641011:2641102:2641475:2641554:2641615,	2641103	2641475	2641351	2641351	Nonsense_Mutation	C	A	p.E175*
LUAD	TCGA-55-6968-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406762	91406762	Nonsense_Mutation	G	C	p.S50*
LUAD	TCGA-55-6968-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88820444:88820582:88820671:88820809:88822412:88822592,	88820672	88820809	88820737	88820737	Nonsense_Mutation	C	A	p.E332*
LUAD	TCGA-55-6968-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96859842	96859842	Nonsense_Mutation	G	T	p.E278*
LUAD	TCGA-55-6968-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42002888:42003547:42005348:42005694:42019377:42019604,	42005349	42005694	42005481	42005481	Nonsense_Mutation	C	T	p.R1073*
LUAD	TCGA-55-6968-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2,ENST00000508157.3	chr5	70791076:70791235:70793096:70793253:70797388:70797480,	70793097	70793253	70793168	70793168	Nonsense_Mutation	C	G	p.S624*
LUAD	TCGA-55-6968-01	ABCC4	ENST00000376887.4,ENST00000431522.1,ENST00000536256.1	chr13	95816631:95816772:95818411:95818621:95822785:95822882,	95818412	95818621	95818482	95818482	Nonsense_Mutation	G	C	p.S655*
LUAD	TCGA-55-6968-01	SYDE2	ENST00000234668.6	chr1	85647780:85648883:85655739:85656435:85665934:85666196,	85655740	85656435	85656030	85656030	Nonsense_Mutation	G	C	p.S384*
LUAD	TCGA-55-6968-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951166	48951166	Nonsense_Mutation	C	G	p.S443*
LUAD	TCGA-55-6969-01	ST3GAL1	ENST00000319914.5,ENST00000399640.2,ENST00000521180.1,ENST00000522652.1	chr8	134471187:134472180:134474117:134474237:134475656:134475702,	134474118	134474237	134474191	134474191	Nonsense_Mutation	C	T	p.W259*
LUAD	TCGA-55-6969-01	AZGP1	ENST00000292401.4	chr7	99564890:99564909:99565777:99566053:99569368:99569629,	99565778	99566053	99565997	99565997	Nonsense_Mutation	C	A	p.G129*
LUAD	TCGA-55-6969-01	UBAC2	ENST00000480738.1,ENST00000460562.1,ENST00000403766.3,ENST00000376440.2,ENST00000473194.1,ENST00000494576.1	chr13	99970275:99970323:99992573:99992819:100020040:100020160,	99992574	99992819	99992718	99992718	Nonsense_Mutation	G	T	p.G201*
LUAD	TCGA-55-6970-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56699163	56699163	Nonsense_Mutation	G	T	p.E236*
LUAD	TCGA-55-6970-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123857254:123857311:123859280:123859404:123868387:123868643,	123859281	123859404	123859323	123859323	Nonsense_Mutation	T	A	p.C459*
LUAD	TCGA-55-6971-01	ITSN2	ENST00000361999.3	chr2	24494673:24494810:24498581:24498718:24509080:24509220,	24498582	24498718	24498701	24498701	Nonsense_Mutation	G	T	p.Y654*
LUAD	TCGA-55-6971-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404020	91404020	Nonsense_Mutation	G	T	p.S964*
LUAD	TCGA-55-6972-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510973	169510973	Nonsense_Mutation	G	A	p.Q1124*
LUAD	TCGA-55-6972-01	RNF20	ENST00000389120.3	chr9	104303123:104303257:104307048:104307167:104309101:104309248,	104307049	104307167	104307162	104307162	Nonsense_Mutation	C	T	p.Q248*
LUAD	TCGA-55-6972-01	EDIL3	ENST00000380138.3	chr5	83433058:83433172:83476210:83476339:83525672:83525702,83433058:83433172:83476210:83476339:83549901:83550030,	83476211	83476339	83476317	83476317	Nonsense_Mutation	G	T	p.C83*
LUAD	TCGA-55-6972-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19290755:19290874:19296005:19296244:19298053:19298120,	19296006	19296244	19296154	19296154	Nonsense_Mutation	C	G	p.S81*
LUAD	TCGA-55-6972-01	ITM2B	ENST00000378565.5	chr13	48832261:48832372:48832932:48833083:48835274:48835524,	48832933	48833083	48832951	48832951	Nonsense_Mutation	C	T	p.Q195*
LUAD	TCGA-55-6972-01	SENP3	ENST00000429205.2,ENST00000321337.7,ENST00000578868.1	chr17	7466382:7467108:7467941:7468181:7468275:7468387,	7467942	7468181	7468082	7468082	Nonsense_Mutation	C	T	p.Q286*
LUAD	TCGA-55-6975-01	INTS8	ENST00000519457.1	chr8	95835603:95835789:95837120:95837295:95839490:95839581,95835437:95835529:95837120:95837295:95839490:95839581,95835603:95835789:95837120:95837295:95839949:95840021,	95837121	95837295	95837232	95837232	Nonsense_Mutation	T	G	p.L81*
LUAD	TCGA-55-6979-01	ORC2	ENST00000457595.1,ENST00000410039.1,ENST00000234296.2	chr2	201822144:201822267:201822752:201822856:201824114:201824163,	201822753	201822856	201822819	201822819	Nonsense_Mutation	T	A	p.K10*
LUAD	TCGA-55-6979-01	IQCH	ENST00000514049.1	chr15	67547185:67547285:67553609:67553732:67636400:67636525,	67553610	67553732	67553673	67553673	Nonsense_Mutation	G	T	p.E39*
LUAD	TCGA-55-6979-01	THOC2	ENST00000438358.1,ENST00000355725.4,ENST00000245838.8,ENST00000459945.1,ENST00000491737.1	chrX	122755373:122755438:122756608:122756711:122756955:122757134,	122756609	122756711	122756691	122756691	Nonsense_Mutation	G	A	p.Q1235*
LUAD	TCGA-55-6981-01	SVOP	ENST00000299134.5	chr12	109304657:109306517:109309558:109309648:109311818:109311900,	109309559	109309648	109309580	109309580	Nonsense_Mutation	G	C	p.S408*
LUAD	TCGA-55-6982-01	CDYL	ENST00000397588.3	chr6	4776675:4777041:4891946:4892613:4935748:4936005,	4891947	4892613	4892238	4892238	Nonsense_Mutation	G	T	p.E160*
LUAD	TCGA-55-6982-01	ZNF688	ENST00000395219.1,ENST00000563276.1	chr16	30582219:30582261:30582330:30582444:30582754:30582956,30581498:30581757:30582330:30582444:30582545:30582848,30581540:30581757:30582330:30582444:30583442:30583728,	30582331	30582444	30582410	30582410	Nonsense_Mutation	C	T	p.W77*
LUAD	TCGA-55-6982-01	SECISBP2L	ENST00000380927.2,ENST00000261847.3,ENST00000559471.1	chr15	49293073:49293294:49301412:49301575:49303927:49304060,	49301413	49301575	49301449	49301449	Nonsense_Mutation	G	T	p.S664*
LUAD	TCGA-55-6982-01	FOLH1	ENST00000340334.7,ENST00000356696.3,ENST00000533034.1,ENST00000256999.2	chr11	49204700:49204794:49207220:49207407:49208195:49208320,	49207221	49207407	49207299	49207299	Nonsense_Mutation	C	A	p.G235*
LUAD	TCGA-55-6983-01	RNF144A	ENST00000320892.6,ENST00000467276.1	chr2	7164499:7164647:7170256:7170346:7179759:7179791,	7170257	7170346	7170334	7170334	Nonsense_Mutation	G	A	p.W245*
LUAD	TCGA-55-6985-01	VIT	ENST00000379241.3,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1,ENST00000404084.1	chr2	37032580:37032807:37035614:37036128:37041325:37041576,	37035615	37036128	37036038	37036038	Nonsense_Mutation	A	T	p.K605*
LUAD	TCGA-55-6985-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906707	103906707	Nonsense_Mutation	C	T	p.R1320*
LUAD	TCGA-55-6985-01	POLRMT	ENST00000588649.2	chr19	619209:619296:619585:619765:619957:620080,	619586	619765	619717	619717	Nonsense_Mutation	G	A	p.Q979*
LUAD	TCGA-55-6987-01	FUT10	ENST00000327671.5,ENST00000524021.1,ENST00000518672.1	chr8	33230161:33230322:33246480:33247316:33310733:33311028,	33246481	33247316	33247083	33247083	Nonsense_Mutation	T	A	p.K204*
LUAD	TCGA-55-6987-01	CSTF3	ENST00000323959.4	chr11	33107440:33107535:33108533:33108687:33112077:33112273,	33108534	33108687	33108570	33108570	Nonsense_Mutation	G	A	p.Q587*
LUAD	TCGA-55-6987-01	TSC22D4	ENST00000393991.1	chr7	100071896:100072063:100074899:100075082:100076416:100076792,	100074900	100075082	100074925	100074925	Nonsense_Mutation	A	T	p.L246*
LUAD	TCGA-55-6987-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100074925	100074925	Nonsense_Mutation	A	T	p.L246*
LUAD	TCGA-55-6987-01	BRMS1L	ENST00000548758.1,ENST00000552677.1,ENST00000551774.1,ENST00000216807.7,ENST00000543183.1	chr14	36302206:36302311:36304049:36304129:36331795:36331892,	36304050	36304129	36304127	36304127	Nonsense_Mutation	G	T	p.E147*
LUAD	TCGA-55-6987-01	TLR4	ENST00000355622.6	chr9	120466666:120466843:120470840:120471007:120474666:120477032,	120470841	120471007	120470885	120470885	Nonsense_Mutation	C	G	p.Y46*
LUAD	TCGA-55-7281-01	DKC1	ENST00000452771.1,ENST00000437719.1,ENST00000473552.1,ENST00000369550.5,ENST00000413910.1	chrX	153993201:153993241:153993718:153993805:153994181:153994273,	153993719	153993805	153993755	153993755	Nonsense_Mutation	G	T	p.E41*
LUAD	TCGA-55-7281-01	DGCR2	ENST00000608548.1,ENST00000537045.1,ENST00000263196.7	chr22	19035952:19036156:19044498:19044675:19050714:19050790,	19044499	19044675	19044598	19044598	Nonsense_Mutation	G	A	p.Q235*
LUAD	TCGA-55-7281-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547481	165547481	Nonsense_Mutation	G	T	p.Y447*
LUAD	TCGA-55-7281-01	ITGA9	ENST00000422441.1,ENST00000264741.5	chr3	37522974:37523098:37535991:37536059:37544668:37544798,	37535992	37536059	37536030	37536030	Nonsense_Mutation	C	T	p.Q195*
LUAD	TCGA-55-7281-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560137	19560137	Nonsense_Mutation	C	A	p.E600*
LUAD	TCGA-55-7281-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274602	114274602	Nonsense_Mutation	G	T	p.E1610*
LUAD	TCGA-55-7283-01	PHF2	ENST00000359246.4	chr9	96420426:96420518:96421792:96421882:96422473:96422842,	96421793	96421882	96421880	96421880	Nonsense_Mutation	G	T	p.E443*
LUAD	TCGA-55-7283-01	PDE5A	ENST00000394439.1,ENST00000420633.1	chr4	120517680:120517767:120527863:120528452:120548304:120548788,120517680:120517767:120527863:120528452:120549149:120549202,	120527864	120528452	120528141	120528141	Nonsense_Mutation	A	T	p.L155*
LUAD	TCGA-55-7283-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228494959:228495232:228495811:228496084:228496799:228496996,	228495812	228496084	228495874	228495874	Nonsense_Mutation	G	T	p.E5134*
LUAD	TCGA-55-7283-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469665	56469665	Nonsense_Mutation	G	C	p.S3221*
LUAD	TCGA-55-7283-01	EPHB1	ENST00000398015.3	chr3	134644657:134644722:134670212:134670894:134825289:134825445,	134670213	134670894	134670690	134670690	Nonsense_Mutation	C	T	p.Q201*
LUAD	TCGA-55-7283-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640864	17640864	Nonsense_Mutation	G	A	p.R97*
LUAD	TCGA-55-7283-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49051255	49051255	Nonsense_Mutation	C	G	p.S793*
LUAD	TCGA-55-7283-01	WDR6	ENST00000415265.2	chr3	49044835:49044964:49050723:49051549:49051642:49051726,	49050724	49051549	49051255	49051255	Nonsense_Mutation	C	G	p.S793*
LUAD	TCGA-55-7283-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49051255	49051255	Nonsense_Mutation	C	G	p.S793*
LUAD	TCGA-55-7284-01	SPTBN5	ENST00000320955.6	chr15	42169006:42169146:42169313:42169554:42170539:42170827,	42169314	42169554	42169382	42169382	Nonsense_Mutation	G	A	p.R1215*
LUAD	TCGA-55-7570-01	CTC1	ENST00000578240.1,ENST00000449476.2,ENST00000315684.8	chr17	8133880:8133969:8134593:8134787:8135043:8135133,	8134594	8134787	8134633	8134633	Nonsense_Mutation	G	C	p.S877*
LUAD	TCGA-55-7570-01	TRAPPC12	ENST00000324266.5	chr2	3383490:3383647:3391390:3392441:3405547:3405664,	3391391	3392441	3391920	3391920	Nonsense_Mutation	G	T	p.E176*
LUAD	TCGA-55-7570-01	HLA-DQB2	ENST00000427449.1	chr6	32724164:32724243:32726626:32726908:32729436:32729703,	32726627	32726908	32726839	32726839	Nonsense_Mutation	G	T	p.S145*
LUAD	TCGA-55-7570-01	MTX2	ENST00000249442.6,ENST00000392529.2,ENST00000443241.1,ENST00000452865.1,ENST00000420864.1	chr2	177191552:177191629:177193020:177193113:177193601:177193640,	177193021	177193113	177193077	177193077	Nonsense_Mutation	C	G	p.Y104*
LUAD	TCGA-55-7573-01	NUP85	ENST00000449421.2,ENST00000541827.1,ENST00000579324.1	chr17	73201814:73201889:73205917:73206080:73208086:73208157,	73205918	73206080	73206052	73206052	Nonsense_Mutation	G	T	p.E88*
LUAD	TCGA-55-7574-01	AR	ENST00000513847.1,ENST00000504326.1,ENST00000396044.3	chrX	66764985:66766604:66863097:66863249:66905851:66905968,	66863098	66863249	66863140	66863140	Nonsense_Mutation	C	G	p.Y553*
LUAD	TCGA-55-7574-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36763225:36763322:36766828:36767053:36768447:36768637,	36766829	36767053	36766899	36766899	Nonsense_Mutation	C	G	p.S726*
LUAD	TCGA-55-7574-01	C11orf54	ENST00000530620.1,ENST00000354421.3,ENST00000528099.1,ENST00000540113.1,ENST00000331239.4	chr11	93487101:93487203:93488375:93488552:93490481:93490587,	93488376	93488552	93488502	93488502	Nonsense_Mutation	C	T	p.Q153*
LUAD	TCGA-55-7574-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573991	7573991	Nonsense_Mutation	C	A	p.E346*
LUAD	TCGA-55-7574-01	LZTS1	ENST00000381569.1,ENST00000522290.1,ENST00000265801.6	chr8	20107622:20107874:20110292:20111096:20112347:20112692,	20110293	20111096	20110421	20110421	Nonsense_Mutation	C	A	p.E341*
LUAD	TCGA-55-7574-01	EFCAB6	ENST00000358439.4	chr22	44161184:44161273:44178059:44178205:44204874:44205011,44161184:44161273:44178059:44178205:44208047:44208070,	44178060	44178205	44178131	44178131	Nonsense_Mutation	G	C	p.S23*
LUAD	TCGA-55-7576-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100922154:100922299:100933177:100933483:100962490:100962607,	100933178	100933483	100933199	100933199	Nonsense_Mutation	T	A	p.K731*
LUAD	TCGA-55-7576-01	MAP2K6	ENST00000590474.1,ENST00000589647.1,ENST00000359094.3	chr17	67522710:67522850:67532255:67532301:67537816:67538152,	67532256	67532301	67532289	67532289	Nonsense_Mutation	C	A	p.Y305*
LUAD	TCGA-55-7576-01	NTRK3	ENST00000557856.1,ENST00000317501.3,ENST00000540489.2,ENST00000542733.2,ENST00000558676.1,ENST00000357724.2,ENST00000355254.2,ENST00000394480.2,ENST00000360948.2	chr15	88576087:88576276:88669501:88669604:88670392:88670422,	88669502	88669604	88669511	88669511	Nonsense_Mutation	C	A	p.G463*
LUAD	TCGA-55-7576-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171260756:171260910:171262054:171262143:171264224:171264354,	171262055	171262143	171262116	171262116	Nonsense_Mutation	C	A	p.C840*
LUAD	TCGA-55-7576-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
LUAD	TCGA-55-7576-01	SEPT10	ENST00000397714.2,ENST00000334001.6,ENST00000486678.2,ENST00000415095.1,ENST00000437928.1,ENST00000356688.4,ENST00000397712.2,ENST00000493445.1	chr2	110323406:110323436:110325391:110325553:110350627:110350696,110323406:110323436:110325391:110325553:110332157:110332344,	110325392	110325553	110325451	110325451	Nonsense_Mutation	G	A	p.Q235*
LUAD	TCGA-55-7724-01	NPHS2	ENST00000367616.4,ENST00000367615.4	chr1	179528813:179528896:179530423:179530496:179533824:179533928,	179530424	179530496	179530487	179530487	Nonsense_Mutation	C	A	p.E130*
LUAD	TCGA-55-7724-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50090040:50090166:50090686:50091251:50092815:50092866,	50090687	50091251	50091199	50091199	Nonsense_Mutation	C	G	p.S459*
LUAD	TCGA-55-7724-01	RSPO2	ENST00000521956.1,ENST00000276659.5	chr8	108972975:108973045:109001283:109001472:109094772:109095035,	109001284	109001472	109001377	109001377	Nonsense_Mutation	G	A	p.R64*
LUAD	TCGA-55-7724-01	CYP4F12	ENST00000550308.1,ENST00000451750.1,ENST00000430608.2,ENST00000324632.10	chr19	15784338:15784537:15789070:15789215:15791053:15791062,	15789071	15789215	15789145	15789145	Nonsense_Mutation	G	A	p.W91*
LUAD	TCGA-55-7724-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53683868:53683996:53684130:53684253:53684624:53684780,	53684131	53684253	53684209	53684209	Nonsense_Mutation	C	T	p.R1774*
LUAD	TCGA-55-7724-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939375	76939375	Nonsense_Mutation	G	C	p.S458*
LUAD	TCGA-55-7725-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056169	27056169	Nonsense_Mutation	A	T	p.K389*
LUAD	TCGA-55-7725-01	FUNDC2	ENST00000484175.1,ENST00000475165.1,ENST00000369498.3	chrX	154261700:154261828:154274783:154274859:154279944:154280007,	154274784	154274859	154274857	154274857	Nonsense_Mutation	C	T	p.Q120*
LUAD	TCGA-55-7726-01	MYO5A	ENST00000399231.3,ENST00000358212.6,ENST00000399229.2,ENST00000399233.2,ENST00000356338.6,ENST00000553916.1	chr15	52620048:52620203:52622549:52622696:52628659:52628753,	52622550	52622696	52622589	52622589	Nonsense_Mutation	T	A	p.K1481*
LUAD	TCGA-55-7726-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141244682	141244682	Nonsense_Mutation	G	C	p.S405*
LUAD	TCGA-55-7727-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579533	7579533	Nonsense_Mutation	G	A	p.Q52*
LUAD	TCGA-55-7727-01	CUL4A	ENST00000375441.3,ENST00000326335.4,ENST00000470067.1,ENST00000472083.1,ENST00000375440.4,ENST00000451881.1	chr13	113900269:113900377:113907395:113907509:113909006:113909089,	113907396	113907509	113907459	113907459	Nonsense_Mutation	C	T	p.Q468*
LUAD	TCGA-55-7815-01	OCA2	ENST00000382996.2,ENST00000354638.3	chr15	28234746:28234812:28235721:28235793:28259921:28260075,	28235722	28235793	28235784	28235784	Nonsense_Mutation	T	A	p.R352*
LUAD	TCGA-55-7815-01	ANK1	ENST00000518715.1	chr8	41521176:41521260:41522322:41522427:41523050:41523348,	41522323	41522427	41522415	41522415	Nonsense_Mutation	C	A	p.E43*
LUAD	TCGA-55-7903-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117680431:117680510:117681101:117681240:117685152:117685327,	117681102	117681240	117681123	117681123	Nonsense_Mutation	C	A	p.E981*
LUAD	TCGA-55-7903-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910587	29910587	Nonsense_Mutation	G	T	p.E43*
LUAD	TCGA-55-7907-01	HSP90AA1	ENST00000216281.8,ENST00000334701.7	chr14	102547385:102548158:102548447:102548781:102549370:102549639,	102548448	102548781	102548771	102548771	Nonsense_Mutation	G	T	p.S711*
LUAD	TCGA-55-7907-01	UBASH3A	ENST00000319294.6	chr21	43833132:43833331:43833518:43833632:43836550:43836720,	43833519	43833632	43833560	43833560	Nonsense_Mutation	G	T	p.G199*
LUAD	TCGA-55-7907-01	CMIP	ENST00000537098.3,ENST00000539778.2,ENST00000398040.4,ENST00000566513.1,ENST00000565680.1	chr16	81727043:81727092:81730164:81730272:81733289:81733406,	81730165	81730272	81730228	81730228	Nonsense_Mutation	G	T	p.G532*
LUAD	TCGA-55-7907-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101740	168101740	Nonsense_Mutation	G	T	p.E1280*
LUAD	TCGA-55-7907-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266977	6266977	Nonsense_Mutation	C	A	p.G129*
LUAD	TCGA-55-7907-01	PLSCR1	ENST00000487389.1	chr3	146246400:146246618:146251256:146251337:146262253:146262308,	146251257	146251337	146251271	146251271	Nonsense_Mutation	G	A	p.R19*
LUAD	TCGA-55-7907-01	FAT3	ENST00000525166.1,ENST00000298047.6,ENST00000409404.2,ENST00000533797.1	chr11	92577505:92577898:92590379:92590514:92592330:92592488,	92590380	92590514	92590415	92590415	Nonsense_Mutation	G	T	p.E3801*
LUAD	TCGA-55-7907-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000490367.1,ENST00000393431.2,ENST00000393434.2,ENST00000488356.1,ENST00000460368.1	chr3	125876242:125876351:125877247:125877482:125879695:125879845,	125877248	125877482	125877423	125877423	Nonsense_Mutation	C	A	p.G63*
LUAD	TCGA-55-7907-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37711071:37711219:37713696:37713844:37716876:37717005,	37713697	37713844	37713755	37713755	Nonsense_Mutation	G	T	p.E223*
LUAD	TCGA-55-7907-01	ARAP2	ENST00000303965.4,ENST00000512804.1	chr4	36152521:36152666:36160351:36160486:36160952:36161127,	36160352	36160486	36160403	36160403	Nonsense_Mutation	G	A	p.Q901*
LUAD	TCGA-55-7907-01	ANO7	ENST00000402430.3,ENST00000274979.8	chr2	242154219:242154317:242155507:242155653:242157100:242157306,	242155508	242155653	242155594	242155594	Nonsense_Mutation	G	A	p.W692*
LUAD	TCGA-55-7907-01	CAPZA2	ENST00000458284.2,ENST00000361183.3,ENST00000449080.1,ENST00000426421.1,ENST00000465607.1	chr7	116550286:116550365:116552122:116552194:116556113:116556164,	116552123	116552194	116552135	116552135	Nonsense_Mutation	G	T	p.E200*
LUAD	TCGA-55-7907-01	MGA	ENST00000563576.1,ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000566718.1,ENST00000570161.1,ENST00000389936.4	chr15	41999925:42000057:42000301:42000406:42002888:42003547,	42000302	42000406	42000361	42000361	Nonsense_Mutation	G	T	p.G794*
LUAD	TCGA-55-7907-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1	chr14	20849471:20849560:20849711:20849845:20850071:20850205,	20849712	20849845	20849739	20849739	Nonsense_Mutation	C	A	p.E1511*
LUAD	TCGA-55-7907-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573058	242573058	Nonsense_Mutation	C	A	p.E172*
LUAD	TCGA-55-7907-01	PHF20	ENST00000439301.1,ENST00000374012.3	chr20	34515701:34515801:34519170:34519366:34526618:34527030,	34519171	34519366	34519296	34519296	Nonsense_Mutation	C	T	p.Q744*
LUAD	TCGA-55-7907-01	SPAG11B	ENST00000297498.2	chr8	7308085:7308422:7308645:7308721:7309780:7309887,7308344:7308422:7308645:7308721:7320228:7320379,	7308646	7308721	7308656	7308656	Nonsense_Mutation	T	A	p.R94*
LUAD	TCGA-55-7910-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7639094:7639409:7639489:7639582:7639954:7640269,	7639490	7639582	7639558	7639558	Nonsense_Mutation	G	T	p.S692*
LUAD	TCGA-55-7910-01	TAF1	ENST00000373790.4,ENST00000478305.1,ENST00000449580.1,ENST00000423759.1,ENST00000276072.3	chrX	70608086:70608228:70608587:70608718:70609434:70609480,	70608588	70608718	70608668	70608668	Nonsense_Mutation	G	T	p.E883*
LUAD	TCGA-55-7910-01	PDSS1	ENST00000376215.5,ENST00000470978.1	chr10	27024394:27024508:27031425:27031506:27035261:27035470,	27031426	27031506	27031431	27031431	Nonsense_Mutation	A	T	p.R281*
LUAD	TCGA-55-7911-01	KRAS	ENST00000311936.3,ENST00000256078.4	chr12	25378547:25378707:25380167:25380346:25398207:25398329,	25380168	25380346	25380196	25380196	Nonsense_Mutation	T	A	p.K88*
LUAD	TCGA-55-7911-01	WDR13	ENST00000471334.1,ENST00000376729.5,ENST00000218056.5	chrX	48456345:48456425:48457104:48457345:48457740:48457850,	48457105	48457345	48457261	48457261	Nonsense_Mutation	C	A	p.Y66*
LUAD	TCGA-55-7911-01	WDR13	ENST00000498631.1,ENST00000497756.2,ENST00000486125.1	chrX	48456345:48456425:48457138:48457345:48457740:48457850,	48457139	48457345	48457261	48457261	Nonsense_Mutation	C	A	p.Y66*
LUAD	TCGA-55-7911-01	RNF17	ENST00000255325.6,ENST00000381921.1,ENST00000255324.5	chr13	25367179:25367484:25370274:25370433:25373532:25373722,	25370275	25370433	25370318	25370318	Nonsense_Mutation	C	A	p.C428*
LUAD	TCGA-55-7911-01	REG1B	ENST00000305089.3,ENST00000479258.1	chr2	79313492:79313630:79313937:79314056:79314674:79314784,	79313938	79314056	79313983	79313983	Nonsense_Mutation	G	T	p.Y46*
LUAD	TCGA-55-7913-01	GABRA2	ENST00000381620.4,ENST00000514090.1,ENST00000356504.1,ENST00000515082.1,ENST00000540012.1,ENST00000507069.1,ENST00000510861.1	chr4	46263942:46264145:46305476:46305629:46307584:46307594,	46305477	46305629	46305627	46305627	Nonsense_Mutation	C	A	p.E236*
LUAD	TCGA-55-7913-01	HP1BP3	ENST00000375003.2,ENST00000312239.5,ENST00000419948.1	chr1	21076259:21076375:21083658:21083749:21091869:21092019,	21083659	21083749	21083703	21083703	Nonsense_Mutation	G	A	p.Q161*
LUAD	TCGA-55-7913-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539051	187539051	Nonsense_Mutation	G	A	p.Q2897*
LUAD	TCGA-55-7913-01	MCOLN3	ENST00000370589.2,ENST00000370587.1	chr1	85499780:85499934:85506692:85506860:85510815:85511043,	85506693	85506860	85506695	85506695	Nonsense_Mutation	G	A	p.Q132*
LUAD	TCGA-55-7913-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220430	1220430	Nonsense_Mutation	A	T	p.K175*
LUAD	TCGA-55-7914-01	NSUN5	ENST00000428206.1,ENST00000455763.1,ENST00000310326.8,ENST00000438747.2,ENST00000252594.6	chr7	72718312:72718405:72718743:72718859:72718955:72719094,	72718744	72718859	72718748	72718748	Nonsense_Mutation	G	A	p.Q213*
LUAD	TCGA-55-7914-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511240	169511240	Nonsense_Mutation	G	A	p.R1035*
LUAD	TCGA-55-7994-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288466	74288466	Nonsense_Mutation	A	T	p.L615*
LUAD	TCGA-55-7994-01	MAP4	ENST00000426837.2	chr3	47918906:47919013:47950527:47953911:47956306:47956429,	47950528	47953911	47951344	47951344	Nonsense_Mutation	C	A	p.G1540*
LUAD	TCGA-55-7994-01	YTHDC2	ENST00000161863.4	chr5	112915282:112915392:112917113:112917406:112919998:112920176,	112917114	112917406	112917375	112917375	Nonsense_Mutation	G	T	p.E1206*
LUAD	TCGA-55-7994-01	MPDZ	ENST00000447879.1,ENST00000541718.1,ENST00000536827.1,ENST00000381015.4,ENST00000546205.1,ENST00000319217.7,ENST00000494251.1,ENST00000381022.2	chr9	13205918:13206098:13216772:13216861:13217178:13217293,	13216773	13216861	13216853	13216853	Nonsense_Mutation	C	A	p.G404*
LUAD	TCGA-55-7994-01	CLDN16	ENST00000264734.2	chr3	190122589:190122715:190126102:190126294:190127691:190127797,	190126103	190126294	190126221	190126221	Nonsense_Mutation	G	A	p.W237*
LUAD	TCGA-55-7994-01	SPOCD1	ENST00000360482.2,ENST00000373648.2	chr1	32267264:32267306:32279551:32280973:32281561:32281580,	32279552	32280973	32280167	32280167	Nonsense_Mutation	G	T	p.C256*
LUAD	TCGA-55-7994-01	MAGED2	ENST00000375060.1,ENST00000375058.1,ENST00000375068.1	chrX	54841093:54841208:54841680:54842123:54842313:54842440,	54841681	54842123	54841723	54841723	Nonsense_Mutation	G	T	p.E477*
LUAD	TCGA-55-7994-01	FRMD4B	ENST00000493880.1,ENST00000398540.3,ENST00000483668.1,ENST00000470070.2,ENST00000487751.1,ENST00000542259.1	chr3	69267472:69267530:69271008:69271074:69273757:69273841,	69271009	69271074	69271058	69271058	Nonsense_Mutation	C	A	p.E174*
LUAD	TCGA-55-7994-01	LSM7	ENST00000587502.1,ENST00000252622.10	chr19	2321547:2321821:2324123:2324195:2328385:2328476,	2324124	2324195	2324190	2324190	Nonsense_Mutation	C	A	p.G35*
LUAD	TCGA-55-7994-01	LSM7	ENST00000585409.2	chr19	2321547:2321821:2324123:2324191:2328385:2328476,	2324124	2324191	2324190	2324190	Nonsense_Mutation	C	A	p.G35*
LUAD	TCGA-55-7994-01	EDA2R	ENST00000456230.2,ENST00000396050.1,ENST00000253392.5,ENST00000374719.3,ENST00000450752.1	chrX	65824262:65824348:65824889:65825068:65835775:65835862,	65824890	65825068	65824998	65824998	Nonsense_Mutation	C	T	p.W53*
LUAD	TCGA-55-7994-01	MGMT	ENST00000306010.7	chr10	131506158:131506307:131557465:131557605:131565051:131566271,	131557466	131557605	131557534	131557534	Nonsense_Mutation	C	T	p.Q146*
LUAD	TCGA-55-7994-01	PLEKHG4	ENST00000563969.1,ENST00000450733.1,ENST00000379344.3,ENST00000427155.2,ENST00000360461.5	chr16	67316644:67316761:67318177:67318360:67318615:67319118,	67318178	67318360	67318226	67318226	Nonsense_Mutation	G	T	p.E520*
LUAD	TCGA-55-7994-01	RPL31	ENST00000409028.4,ENST00000419276.1,ENST00000409038.1,ENST00000409320.3,ENST00000409650.1,ENST00000409000.1	chr2	101618772:101618777:101619163:101619270:101620619:101620745,	101619164	101619270	101619266	101619266	Nonsense_Mutation	G	T	p.G35*
LUAD	TCGA-55-7994-01	NCAM1	ENST00000316851.7,ENST00000529420.1,ENST00000524665.1,ENST00000397957.4,ENST00000527506.1,ENST00000401611.2,ENST00000531044.1,ENST00000533760.1,ENST00000534015.1,ENST00000531915.1	chr11	113076764:113076902:113077982:113078100:113078554:113078724,	113077983	113078100	113078066	113078066	Nonsense_Mutation	G	T	p.E228*
LUAD	TCGA-55-7994-01	SRP54	ENST00000556994.1,ENST00000216774.6	chr14	35465882:35465993:35470141:35470226:35476488:35476593,35468763:35468855:35470141:35470226:35476488:35476593,	35470142	35470226	35470161	35470161	Nonsense_Mutation	G	T	p.E64*
LUAD	TCGA-55-7994-01	GALNT14	ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31147063:31147129:31147605:31147689:31152260:31152353,	31147606	31147689	31147628	31147628	Nonsense_Mutation	C	A	p.E405*
LUAD	TCGA-55-7994-01	NKAIN2	ENST00000368416.1,ENST00000545433.1,ENST00000368417.1	chr6	124604150:124604288:124676412:124676493:124979331:124979532,	124676413	124676493	124676489	124676489	Nonsense_Mutation	C	A	p.S90*
LUAD	TCGA-55-7994-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10132085:10132272:10155518:10155654:10161165:10161253,	10155519	10155654	10155609	10155609	Nonsense_Mutation	C	G	p.S101*
LUAD	TCGA-55-7994-01	TMEM63B	ENST00000497371.2,ENST00000371893.2,ENST00000323267.6,ENST00000533121.1,ENST00000534326.1,ENST00000259746.9	chr6	44115113:44115237:44115988:44116122:44116249:44116376,	44115989	44116122	44116019	44116019	Nonsense_Mutation	G	T	p.E340*
LUAD	TCGA-55-7994-01	GLRB	ENST00000509282.1,ENST00000264428.4	chr4	158064958:158065111:158073869:158074162:158091583:158091958,	158073870	158074162	158074127	158074127	Nonsense_Mutation	G	T	p.G388*
LUAD	TCGA-55-7994-01	OXR1	ENST00000445937.1,ENST00000442977.2,ENST00000531443.1,ENST00000452423.2,ENST00000517566.2	chr8	107531170:107531367:107691437:107691520:107695426:107695534,	107691438	107691520	107691473	107691473	Nonsense_Mutation	G	T	p.G86*
LUAD	TCGA-55-7995-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051765	96051765	Nonsense_Mutation	G	T	p.E1614*
LUAD	TCGA-55-7995-01	KIF18A	ENST00000533466.1,ENST00000263181.6	chr11	28112955:28113060:28116189:28116347:28119169:28119434,	28116190	28116347	28116282	28116282	Nonsense_Mutation	C	A	p.G131*
LUAD	TCGA-55-7995-01	MATK	ENST00000395040.2,ENST00000310132.6,ENST00000395045.2	chr19	3777972:3778420:3778506:3778593:3778989:3779185,	3778507	3778593	3778545	3778545	Nonsense_Mutation	C	A	p.E416*
LUAD	TCGA-55-7995-01	MATK	ENST00000585778.1	chr19	3777972:3778420:3778506:3778590:3778989:3779185,	3778507	3778590	3778545	3778545	Nonsense_Mutation	C	A	p.E416*
LUAD	TCGA-55-7995-01	EIF3F	ENST00000449102.2,ENST00000531329.1	chr11	8008902:8009263:8013630:8013710:8014433:8014540,	8013631	8013710	8013694	8013694	Nonsense_Mutation	G	T	p.E167*
LUAD	TCGA-55-8085-01	CCDC74B	ENST00000409943.3,ENST00000392984.3,ENST00000310463.6	chr2	130897595:130897669:130897751:130897944:130898730:130898869,	130897752	130897944	130897886	130897886	Nonsense_Mutation	G	A	p.Q350*
LUAD	TCGA-55-8085-01	EPHX3	ENST00000221730.3,ENST00000435261.1,ENST00000602233.1	chr19	15338581:15338718:15338807:15338911:15341772:15341901,	15338808	15338911	15338810	15338810	Nonsense_Mutation	G	A	p.Q240*
LUAD	TCGA-55-8085-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000357304.4	chr9	134308003:134308181:134312006:134312109:134314375:134314448,	134312007	134312109	134312026	134312026	Nonsense_Mutation	C	T	p.Q105*
LUAD	TCGA-55-8085-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
LUAD	TCGA-55-8085-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370489	240370489	Nonsense_Mutation	C	T	p.R793*
LUAD	TCGA-55-8085-01	PTPRO	ENST00000348962.2,ENST00000543886.1,ENST00000281171.4	chr12	15652375:15652528:15654553:15654997:15656841:15657003,	15654554	15654997	15654855	15654855	Nonsense_Mutation	C	G	p.Y321*
LUAD	TCGA-55-8085-01	UHMK1	ENST00000489294.1,ENST00000538489.1,ENST00000545294.1	chr1	162469744:162470037:162470702:162470894:162473543:162473638,	162470703	162470894	162470836	162470836	Nonsense_Mutation	T	G	p.L232*
LUAD	TCGA-55-8089-01	COL7A1	ENST00000454817.1,ENST00000328333.8	chr3	48623372:48623408:48623506:48623679:48623764:48623905,	48623507	48623679	48623528	48623528	Nonsense_Mutation	A	T	p.C1234*
LUAD	TCGA-55-8089-01	DCLRE1B	ENST00000369563.3	chr1	114448030:114448397:114450630:114450813:114453752:114454460,114449617:114449783:114450630:114450813:114453752:114454460,	114450631	114450813	114450663	114450663	Nonsense_Mutation	G	T	p.E130*
LUAD	TCGA-55-8089-01	TSGA10	ENST00000409564.2	chr2	99634998:99635103:99636742:99636945:99651692:99651902,99634998:99635103:99636742:99636945:99681401:99681587,	99636743	99636945	99636909	99636909	Nonsense_Mutation	C	A	p.E551*
LUAD	TCGA-55-8089-01	SFR1	ENST00000369727.3,ENST00000369729.3,ENST00000336358.5	chr10	105882722:105882844:105883471:105883882:105885270:105885602,	105883472	105883882	105883587	105883587	Nonsense_Mutation	C	G	p.S146*
LUAD	TCGA-55-8089-01	SEMA5A	ENST00000382496.5	chr5	9154599:9154807:9190378:9190583:9197279:9197415,	9190379	9190583	9190544	9190544	Nonsense_Mutation	C	A	p.E370*
LUAD	TCGA-55-8089-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176526089	176526089	Nonsense_Mutation	G	T	p.G211*
LUAD	TCGA-55-8089-01	LRRFIP2	ENST00000354379.4,ENST00000416425.1,ENST00000421276.2,ENST00000440230.1	chr3	37138106:37138151:37170553:37170640:37190384:37190529,	37170554	37170640	37170577	37170577	Nonsense_Mutation	C	A	p.E52*
LUAD	TCGA-55-8089-01	TRPV4	ENST00000537083.1,ENST00000392719.2,ENST00000538125.1,ENST00000541794.1,ENST00000544971.1,ENST00000346520.2,ENST00000536838.1,ENST00000261740.2	chr12	110240795:110240948:110246100:110246273:110252215:110252420,	110246101	110246273	110246263	110246263	Nonsense_Mutation	G	A	p.Q133*
LUAD	TCGA-55-8089-01	DOK5	ENST00000395939.1,ENST00000262593.5	chr20	53226926:53227062:53259996:53260117:53266953:53267429,	53259997	53260117	53260096	53260096	Nonsense_Mutation	G	T	p.G279*
LUAD	TCGA-55-8089-01	CRELD2	ENST00000403427.3,ENST00000483652.1,ENST00000328268.4,ENST00000482956.1,ENST00000450207.1,ENST00000407217.3	chr22	50313803:50313895:50315232:50315409:50316259:50316355,	50315233	50315409	50315238	50315238	Nonsense_Mutation	C	T	p.Q141*
LUAD	TCGA-55-8089-01	STK35	ENST00000246032.3,ENST00000381482.3	chr20	2083553:2084011:2097311:2098061:2124429:2124538,	2097312	2098061	2097995	2097995	Nonsense_Mutation	A	T	p.R526*
LUAD	TCGA-55-8089-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101453	27101453	Nonsense_Mutation	C	T	p.Q1579*
LUAD	TCGA-55-8089-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000569036.2,ENST00000429102.2	chr16	68713701:68713877:68714870:68714999:68716204:68716295,	68714871	68714999	68714952	68714952	Nonsense_Mutation	G	T	p.E317*
LUAD	TCGA-55-8089-01	TSPAN11	ENST00000546076.1,ENST00000261177.9,ENST00000544427.1,ENST00000535215.1	chr12	31132500:31132605:31135466:31135625:31135998:31136085,	31135467	31135625	31135492	31135492	Nonsense_Mutation	C	A	p.S161*
LUAD	TCGA-55-8089-01	ABCF2	ENST00000287844.2,ENST00000222388.2,ENST00000473874.1	chr7	150915839:150915959:150916149:150916245:150918663:150918766,	150916150	150916245	150916206	150916206	Nonsense_Mutation	C	A	p.E321*
LUAD	TCGA-55-8089-01	OLR1	ENST00000339968.6,ENST00000539518.1,ENST00000538745.1,ENST00000309539.3	chr12	10312617:10312620:10313384:10313524:10319310:10319548,10313000:10313061:10313384:10313524:10319310:10319548,	10313385	10313524	10313441	10313441	Nonsense_Mutation	C	A	p.E170*
LUAD	TCGA-55-8089-01	COG7	ENST00000307149.5	chr16	23424768:23424885:23428287:23428442:23430020:23430148,	23428288	23428442	23428349	23428349	Nonsense_Mutation	T	A	p.R411*
LUAD	TCGA-55-8089-01	POLR3E	ENST00000418581.2,ENST00000564061.1,ENST00000299853.5,ENST00000564750.1,ENST00000564209.1,ENST00000359210.4	chr16	22320748:22320831:22324940:22325048:22325399:22325449,	22324941	22325048	22325045	22325045	Nonsense_Mutation	G	T	p.E157*
LUAD	TCGA-55-8089-01	POLR3E	ENST00000565551.1	chr16	22320748:22320831:22324978:22325048:22325399:22325449,	22324979	22325048	22325045	22325045	Nonsense_Mutation	G	T	p.E157*
LUAD	TCGA-55-8090-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55601949:55602019:55615913:55616022:55645951:55646052,	55615914	55616022	55615934	55615934	Nonsense_Mutation	G	A	p.Q85*
LUAD	TCGA-55-8092-01	MSH3	ENST00000265081.6	chr5	80071512:80071577:80074538:80074655:80083383:80083491,	80074539	80074655	80074609	80074609	Nonsense_Mutation	G	T	p.E797*
LUAD	TCGA-55-8092-01	RWDD2B	ENST00000286777.2	chr21	30378719:30378972:30380081:30380444:30380715:30380942,	30380082	30380444	30380095	30380095	Nonsense_Mutation	C	A	p.E238*
LUAD	TCGA-55-8092-01	HMGCS2	ENST00000544913.2	chr1	120299895:120300061:120301740:120301905:120302486:120302612,120299895:120300061:120301740:120301905:120306794:120307249,	120301741	120301905	120301854	120301854	Nonsense_Mutation	A	T	p.L246*
LUAD	TCGA-55-8092-01	MASP2	ENST00000400897.3	chr1	11094884:11094963:11097749:11097868:11102931:11103079,	11097750	11097868	11097866	11097866	Nonsense_Mutation	G	A	p.Q298*
LUAD	TCGA-55-8092-01	PDE4DIP	ENST00000533768.1,ENST00000524974.1,ENST00000369354.3,ENST00000313382.9,ENST00000525630.1,ENST00000369359.4,ENST00000530062.1,ENST00000369356.4,ENST00000530740.1	chr1	144854517:144854656:144855739:144855883:144856815:144856884,	144855740	144855883	144855817	144855817	Nonsense_Mutation	C	A	p.E2382*
LUAD	TCGA-55-8094-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926499	1926499	Nonsense_Mutation	C	A	p.E348*
LUAD	TCGA-55-8094-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926499	1926499	Nonsense_Mutation	C	A	p.E348*
LUAD	TCGA-55-8094-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
LUAD	TCGA-55-8094-01	ADIPOR1	ENST00000367254.3	chr1	202917431:202917548:202920057:202920292:202927312:202927413,	202920058	202920292	202920093	202920093	Nonsense_Mutation	C	A	p.E36*
LUAD	TCGA-55-8094-01	NRK	ENST00000243300.9,ENST00000428173.2	chrX	105179161:105179317:105181430:105181574:105183865:105184024,	105181431	105181574	105181572	105181572	Nonsense_Mutation	C	G	p.S1267*
LUAD	TCGA-55-8094-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000583809.1,ENST00000581231.1,ENST00000583054.1,ENST00000317931.7	chr18	6263945:6264037:6301901:6301956:6311552:6311655,	6301902	6301956	6301947	6301947	Nonsense_Mutation	C	A	p.E28*
LUAD	TCGA-55-8094-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547892	165547892	Nonsense_Mutation	A	T	p.Y310*
LUAD	TCGA-55-8096-01	MYO9A	ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000567560.1	chr15	72324834:72324929:72338064:72338975:72410020:72410109,	72338065	72338975	72338223	72338223	Nonsense_Mutation	G	A	p.Q228*
LUAD	TCGA-55-8096-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574012	7574012	Nonsense_Mutation	C	A	p.E339*
LUAD	TCGA-55-8096-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450747	55450747	Nonsense_Mutation	G	T	p.Y508*
LUAD	TCGA-55-8096-01	CREB5	ENST00000409603.1,ENST00000396298.2,ENST00000396299.2,ENST00000396300.2,ENST00000357727.2	chr7	28843815:28844139:28848803:28849031:28857687:28857796,	28848804	28849031	28848987	28848987	Nonsense_Mutation	G	T	p.E404*
LUAD	TCGA-55-8096-01	LRP10	ENST00000551466.1,ENST00000546834.1,ENST00000359591.4	chr14	23344344:23344454:23344563:23345581:23345897:23346027,	23344564	23345581	23345405	23345405	Nonsense_Mutation	G	A	p.W416*
LUAD	TCGA-55-8203-01	DCLRE1C	ENST00000378289.4,ENST00000378246.2,ENST00000378278.2,ENST00000453695.2	chr10	14981808:14981868:14987103:14987188:14991034:14991086,	14987104	14987188	14987184	14987184	Nonsense_Mutation	T	A	p.K56*
LUAD	TCGA-55-8203-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21555919:21556060:21581734:21581928:21592309:21592486,	21581735	21581928	21581787	21581787	Nonsense_Mutation	C	A	p.C641*
LUAD	TCGA-55-8203-01	PTPRH	ENST00000376350.3,ENST00000588559.1	chr19	55713423:55713690:55715149:55715416:55716693:55716960,	55715150	55715416	55715189	55715189	Nonsense_Mutation	C	A	p.G283*
LUAD	TCGA-55-8203-01	SELP	ENST00000367788.2,ENST00000426706.2,ENST00000263686.6,ENST00000367794.2,ENST00000367786.2,ENST00000367793.2	chr1	169566228:169566414:169572263:169572449:169576186:169576372,	169572264	169572449	169572267	169572267	Nonsense_Mutation	C	A	p.E568*
LUAD	TCGA-55-8204-01	SELE	ENST00000333360.7	chr1	169696489:169696666:169696879:169697068:169697198:169697387,	169696880	169697068	169696958	169696958	Nonsense_Mutation	C	A	p.G464*
LUAD	TCGA-55-8204-01	NUP107	ENST00000538993.1,ENST00000229179.4,ENST00000539906.1	chr12	69120278:69120397:69121130:69121169:69124889:69125040,	69121131	69121169	69121134	69121134	Nonsense_Mutation	G	T	p.E567*
LUAD	TCGA-55-8204-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753533	241753533	Nonsense_Mutation	G	T	p.E410*
LUAD	TCGA-55-8205-01	STAT1	ENST00000452281.1,ENST00000409465.1,ENST00000540176.1,ENST00000361099.3,ENST00000392322.3,ENST00000392323.2	chr2	191855953:191856046:191859786:191859945:191862581:191862733,	191859787	191859945	191859800	191859800	Nonsense_Mutation	G	A	p.Q311*
LUAD	TCGA-55-8205-01	MFSD9	ENST00000428085.1,ENST00000411991.1	chr2	103340158:103340368:103343303:103343433:103347483:103347527,103340158:103340337:103343303:103343433:103347483:103347527,	103343304	103343433	103343412	103343412	Nonsense_Mutation	C	A	p.G107*
LUAD	TCGA-55-8205-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131253866:131254173:131261400:131261637:131268790:131268924,	131261401	131261637	131261465	131261465	Nonsense_Mutation	G	T	p.S492*
LUAD	TCGA-55-8205-01	ADCY2	ENST00000338316.4	chr5	7520850:7521012:7626279:7626429:7690803:7690952,	7626280	7626429	7626322	7626322	Nonsense_Mutation	G	T	p.G205*
LUAD	TCGA-55-8205-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654691	29654691	Nonsense_Mutation	C	T	p.Q1815*
LUAD	TCGA-55-8205-01	PTPRJ	ENST00000440289.2,ENST00000418331.2	chr11	48134343:48134535:48142554:48142818:48145164:48145252,	48142555	48142818	48142704	48142704	Nonsense_Mutation	C	T	p.Q168*
LUAD	TCGA-55-8205-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113705003	113705003	Nonsense_Mutation	G	A	p.Q197*
LUAD	TCGA-55-8205-01	ESR1	ENST00000456483.2	chr6	152163731:152163922:152201789:152201906:152265307:152265643,152163731:152163922:152201789:152201906:152332790:152332929,	152201790	152201906	152201857	152201857	Nonsense_Mutation	C	A	p.C237*
LUAD	TCGA-55-8206-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829658	61829658	Nonsense_Mutation	G	A	p.Q3661*
LUAD	TCGA-55-8207-01	CYP11B1	ENST00000517471.1,ENST00000377675.3,ENST00000292427.4	chr8	143957127:143957294:143957656:143957811:143958097:143958301,	143957657	143957811	143957737	143957737	Nonsense_Mutation	C	A	p.E292*
LUAD	TCGA-55-8207-01	IPO9	ENST00000361565.4	chr1	201840288:201840455:201841955:201842089:201843377:201843500,	201841956	201842089	201841972	201841972	Nonsense_Mutation	A	T	p.K865*
LUAD	TCGA-55-8208-01	BRCA1	ENST00000352993.3,ENST00000478531.1,ENST00000493795.1,ENST00000309486.4,ENST00000493919.1,ENST00000351666.3,ENST00000484087.1,ENST00000491747.2,ENST00000468300.1,ENST00000461221.1,ENST00000591534.1,ENST00000357654.3,ENST00000471181.2	chr17	41215890:41215968:41219624:41219712:41222944:41223083,	41219625	41219712	41219652	41219652	Nonsense_Mutation	C	A	p.E1387*
LUAD	TCGA-55-8208-01	SDS	ENST00000257549.4	chr12	113831696:113831821:113834969:113835197:113836319:113836411,	113834970	113835197	113834980	113834980	Nonsense_Mutation	T	A	p.K215*
LUAD	TCGA-55-8208-01	SELP	ENST00000367788.2,ENST00000426706.2,ENST00000263686.6,ENST00000367794.2,ENST00000367786.2,ENST00000367793.2	chr1	169565162:169565372:169566228:169566414:169572263:169572449,	169566229	169566414	169566259	169566259	Nonsense_Mutation	T	A	p.R621*
LUAD	TCGA-55-8208-01	EPHB1	ENST00000493838.1,ENST00000398015.3	chr3	134920315:134920531:134959989:134960139:134967157:134967351,	134959990	134960139	134960099	134960099	Nonsense_Mutation	C	A	p.S819*
LUAD	TCGA-55-8299-01	POLA1	ENST00000379059.3,ENST00000379068.3	chrX	24906122:24906239:24948569:24948666:25013921:25015103,	24948570	24948666	24948614	24948614	Nonsense_Mutation	C	A	p.Y1403*
LUAD	TCGA-55-8301-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157607	145157607	Nonsense_Mutation	C	A	p.E383*
LUAD	TCGA-55-8301-01	ILDR1	ENST00000273691.3,ENST00000462014.1	chr3	121713028:121713160:121720154:121720301:121720591:121720711,121711996:121712817:121720154:121720301:121720591:121720711,	121720155	121720301	121720218	121720218	Nonsense_Mutation	G	A	p.Q195*
LUAD	TCGA-55-8301-01	UPK1A	ENST00000222275.2	chr19	36157714:36157798:36159355:36159556:36164133:36164208,	36159356	36159556	36159435	36159435	Nonsense_Mutation	C	A	p.S55*
LUAD	TCGA-55-8301-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000367009.1,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210761241:210761443:210796869:210797014:210847629:210847751,	210796870	210797014	210796994	210796994	Nonsense_Mutation	G	A	p.W457*
LUAD	TCGA-55-8302-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44047053:44047239:44049935:44050074:44051051:44051257,	44049936	44050074	44050016	44050016	Nonsense_Mutation	C	T	p.W66*
LUAD	TCGA-55-8302-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255948	9255948	Nonsense_Mutation	A	T	p.K872*
LUAD	TCGA-55-8302-01	KIAA1109	ENST00000495260.1,ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123145655:123145832:123147861:123147990:123150275:123150350,	123147862	123147990	123147883	123147883	Nonsense_Mutation	G	T	p.G939*
LUAD	TCGA-55-8302-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42360586	42360586	Nonsense_Mutation	C	T	p.Q507*
LUAD	TCGA-55-8302-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133898950	133898950	Nonsense_Mutation	C	T	p.R445*
LUAD	TCGA-55-8302-01	FCRL2	ENST00000368181.4	chr1	157736644:157736761:157740198:157740456:157745564:157745585,	157740199	157740456	157740421	157740421	Nonsense_Mutation	C	A	p.E30*
LUAD	TCGA-55-8302-01	MAP3K7CL	ENST00000339024.4,ENST00000399925.1,ENST00000451489.1,ENST00000399934.1,ENST00000399928.1,ENST00000286791.5,ENST00000399926.1,ENST00000399935.2	chr21	30505626:30505735:30521509:30521571:30532261:30532377,	30521510	30521571	30521560	30521560	Nonsense_Mutation	C	T	p.Q41*
LUAD	TCGA-55-8302-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574000	7574000	Nonsense_Mutation	C	A	p.E343*
LUAD	TCGA-55-8302-01	CD300A	ENST00000582319.1	chr17	72462814:72462882:72469674:72470013:72470670:72470824,	72469675	72470013	72469995	72469995	Nonsense_Mutation	G	T	p.E121*
LUAD	TCGA-55-8505-01	KEAP1	ENST00000585845.1	chr19	10602935:10602938:10610070:10610262:10613916:10614234,	10610071	10610262	10610133	10610133	Nonsense_Mutation	G	A	p.Q193*
LUAD	TCGA-55-8505-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610133	10610133	Nonsense_Mutation	G	A	p.Q193*
LUAD	TCGA-55-8506-01	C2CD5	ENST00000333957.4	chr12	22606829:22606976:22609904:22610095:22622642:22622729,	22609905	22610095	22609907	22609907	Nonsense_Mutation	C	A	p.E908*
LUAD	TCGA-55-8506-01	MAP3K13	ENST00000265026.3	chr3	185003312:185003431:185146284:185146844:185155234:185155418,185081029:185081156:185146284:185146844:185155234:185155418,	185146285	185146844	185146649	185146649	Nonsense_Mutation	G	T	p.E94*
LUAD	TCGA-55-8506-01	MAP3K13	ENST00000433092.1	chr3	185046682:185046750:185146284:185146734:185155234:185155418,	185146285	185146734	185146649	185146649	Nonsense_Mutation	G	T	p.E94*
LUAD	TCGA-55-8506-01	PNLIP	ENST00000369221.2,ENST00000470562.1	chr10	118306805:118306960:118307871:118307994:118310609:118310744,	118307872	118307994	118307992	118307992	Nonsense_Mutation	A	T	p.K108*
LUAD	TCGA-55-8506-01	SLC26A4	ENST00000265715.3	chr7	107315389:107315554:107323646:107323799:107323899:107323982,	107323647	107323799	107323740	107323740	Nonsense_Mutation	G	T	p.E287*
LUAD	TCGA-55-8506-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806393	22806393	Nonsense_Mutation	G	A	p.R497*
LUAD	TCGA-55-8506-01	FBXO27	ENST00000509137.2,ENST00000594770.1,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39516158:39516194:39517509:39517645:39521668:39521764,	39517510	39517645	39517531	39517531	Nonsense_Mutation	C	T	p.W229*
LUAD	TCGA-55-8506-01	GSK3B	ENST00000264235.8	chr3	119545547:119545702:119582265:119582452:119595259:119595355,119562101:119562200:119582265:119582452:119595259:119595355,	119582266	119582452	119582446	119582446	Nonsense_Mutation	G	A	p.R306*
LUAD	TCGA-55-8506-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28878163	28878163	Nonsense_Mutation	G	T	p.E250*
LUAD	TCGA-55-8506-01	DLG5	ENST00000372388.2,ENST00000424842.1	chr10	79581539:79581859:79584141:79584234:79588639:79588743,79579652:79579776:79584141:79584234:79588639:79588743,	79584142	79584234	79584144	79584144	Nonsense_Mutation	T	A	p.K794*
LUAD	TCGA-55-8506-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000477753.1,ENST00000370163.3,ENST00000294724.4	chr1	100340709:100340812:100340913:100341011:100342013:100342153,	100340914	100341011	100340950	100340950	Nonsense_Mutation	C	T	p.R408*
LUAD	TCGA-55-8506-01	TRAP1	ENST00000574941.1,ENST00000576106.1,ENST00000246957.5	chr16	3739112:3739138:3740827:3740986:3767421:3767513,	3740828	3740986	3740936	3740936	Nonsense_Mutation	G	A	p.R47*
LUAD	TCGA-55-8506-01	XYLB	ENST00000207870.3,ENST00000472721.1,ENST00000542835.1,ENST00000424034.1	chr3	38418411:38418482:38420736:38420833:38436995:38437054,	38420737	38420833	38420767	38420767	Nonsense_Mutation	C	T	p.R409*
LUAD	TCGA-55-8506-01	ZPBP	ENST00000046087.2	chr7	50097584:50097737:50121369:50121495:50129224:50129305,	50121370	50121495	50121398	50121398	Nonsense_Mutation	C	T	p.W102*
LUAD	TCGA-55-8506-01	RAP1GDS1	ENST00000408927.3,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000408900.3	chr4	99313102:99313231:99325627:99325753:99337895:99338039,	99325628	99325753	99325714	99325714	Nonsense_Mutation	G	T	p.E242*
LUAD	TCGA-55-8506-01	MYBPC2	ENST00000357701.5	chr19	50939268:50939417:50939873:50939991:50940729:50940778,	50939874	50939991	50939886	50939886	Nonsense_Mutation	G	T	p.E120*
LUAD	TCGA-55-8506-01	CGN	ENST00000271636.7	chr1	151502964:151503222:151504877:151505048:151506450:151506612,	151504878	151505048	151504914	151504914	Nonsense_Mutation	C	T	p.Q870*
LUAD	TCGA-55-8506-01	TRMT2B	ENST00000338687.7,ENST00000372939.1	chrX	100290611:100290672:100291962:100292062:100296305:100296360,	100291963	100292062	100291975	100291975	Nonsense_Mutation	C	A	p.G131*
LUAD	TCGA-55-8506-01	UQCRB	ENST00000518406.1,ENST00000521036.1,ENST00000519322.1,ENST00000523920.1	chr8	97244001:97244168:97245383:97245455:97247739:97247767,	97245384	97245455	97245423	97245423	Nonsense_Mutation	G	A	p.R18*
LUAD	TCGA-55-8506-01	NR5A1	ENST00000373588.4	chr9	127255356:127255428:127262368:127262994:127265357:127265499,	127262369	127262994	127262440	127262440	Nonsense_Mutation	T	A	p.R267*
LUAD	TCGA-55-8506-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54783890	54783890	Nonsense_Mutation	T	A	p.K873*
LUAD	TCGA-55-8507-01	PRSS27	ENST00000562249.1,ENST00000565903.1	chr16	2763529:2763699:2764065:2764337:2766500:2766527,	2764066	2764337	2764226	2764226	Nonsense_Mutation	G	T	p.Y116*
LUAD	TCGA-55-8507-01	WDR86	ENST00000469830.2	chr7	151078963:151079067:151082173:151082373:151092861:151093003,	151082174	151082373	151082344	151082344	Nonsense_Mutation	G	T	p.C252*
LUAD	TCGA-55-8507-01	ATP8B2	ENST00000368489.3	chr1	154317446:154317630:154317797:154318021:154318275:154318359,	154317798	154318021	154318006	154318006	Nonsense_Mutation	T	A	p.C926*
LUAD	TCGA-55-8507-01	INSC	ENST00000379554.3,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15199869:15199993:15212246:15212360:15222369:15222495,	15212247	15212360	15212341	15212341	Nonsense_Mutation	T	A	p.L272*
LUAD	TCGA-55-8507-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
LUAD	TCGA-55-8507-01	TMEM51	ENST00000451326.2	chr1	15536985:15537058:15541390:15541927:15545821:15545842,15480284:15480450:15541390:15541927:15545821:15545842,15479072:15479280:15541390:15541927:15545821:15545842,	15541391	15541927	15541737	15541737	Nonsense_Mutation	G	T	p.E52*
LUAD	TCGA-55-8507-01	TBX2	ENST00000240328.3,ENST00000419047.1	chr17	59481966:59482130:59482562:59483197:59485414:59486786,	59482563	59483197	59482616	59482616	Nonsense_Mutation	G	T	p.E369*
LUAD	TCGA-55-8507-01	KIF26B	ENST00000407071.2	chr1	245319583:245319985:245530135:245530669:245582880:245583047,	245530136	245530669	245530405	245530405	Nonsense_Mutation	G	A	p.W245*
LUAD	TCGA-55-8507-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365451	37365451	Nonsense_Mutation	G	T	p.E692*
LUAD	TCGA-55-8508-01	COL11A2	ENST00000357486.1,ENST00000374708.4,ENST00000374713.1,ENST00000374712.1,ENST00000341947.2,ENST00000395197.1,ENST00000361917.1,ENST00000374714.1	chr6	33139243:33139351:33139489:33139597:33139826:33139880,	33139490	33139597	33139582	33139582	Nonsense_Mutation	G	A	p.R1020*
LUAD	TCGA-55-8508-01	GBE1	ENST00000498468.1	chr3	81691931:81692141:81695542:81695655:81698006:81698142,	81695543	81695655	81695601	81695601	Nonsense_Mutation	C	A	p.E242*
LUAD	TCGA-55-8508-01	GBE1	ENST00000489715.1,ENST00000429644.2	chr3	81691931:81692141:81695542:81695633:81698006:81698142,	81695543	81695633	81695601	81695601	Nonsense_Mutation	C	A	p.E242*
LUAD	TCGA-55-8508-01	RAPGEF4	ENST00000538974.1,ENST00000540783.1,ENST00000397085.3,ENST00000397081.3,ENST00000535187.1,ENST00000539331.1,ENST00000264111.6,ENST00000397087.3	chr2	173891808:173891987:173894891:173894982:173898641:173898692,	173894892	173894982	173894896	173894896	Nonsense_Mutation	A	T	p.K854*
LUAD	TCGA-55-8510-01	SERPINB3	ENST00000332821.8	chr18	61328033:61328090:61328285:61328476:61329079:61329118,	61328286	61328476	61328386	61328386	Nonsense_Mutation	G	T	p.S22*
LUAD	TCGA-55-8510-01	NVL	ENST00000467882.1,ENST00000391875.2,ENST00000469968.1,ENST00000361463.3,ENST00000469075.1,ENST00000281701.6	chr1	224484202:224484320:224488263:224488365:224491424:224491559,	224488264	224488365	224488275	224488275	Nonsense_Mutation	C	A	p.E351*
LUAD	TCGA-55-8510-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922516	150922516	Nonsense_Mutation	G	T	p.Y2724*
LUAD	TCGA-55-8510-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LUAD	TCGA-55-8511-01	GSDMA	ENST00000301659.4	chr17	38130062:38130083:38130525:38130680:38131152:38131267,	38130526	38130680	38130567	38130567	Nonsense_Mutation	C	T	p.Q265*
LUAD	TCGA-55-8511-01	HYAL4	ENST00000223026.4,ENST00000476325.1	chr7	123508276:123509281:123514814:123514904:123516807:123517239,	123514815	123514904	123514854	123514854	Nonsense_Mutation	G	T	p.G332*
LUAD	TCGA-55-8511-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469747	56469747	Nonsense_Mutation	C	A	p.E3194*
LUAD	TCGA-55-8511-01	SEMA3F	ENST00000002829.3,ENST00000450338.1	chr3	50192561:50192997:50197007:50197167:50211225:50211386,	50197008	50197167	50197159	50197159	Nonsense_Mutation	C	A	p.S35*
LUAD	TCGA-55-8511-01	TTR	ENST00000237014.3	chr18	29172858:29172989:29175082:29175218:29178530:29178565,	29175083	29175218	29175156	29175156	Nonsense_Mutation	G	T	p.E92*
LUAD	TCGA-55-8511-01	IGFBP7	ENST00000295666.4,ENST00000537922.1	chr4	57899360:57899477:57906989:57907099:57976042:57976112,	57906990	57907099	57906997	57906997	Nonsense_Mutation	C	T	p.W193*
LUAD	TCGA-55-8511-01	UBAP2L	ENST00000271877.7,ENST00000428931.1,ENST00000343815.6,ENST00000361546.2	chr1	154223956:154224129:154226375:154226565:154227311:154227366,	154226376	154226565	154226440	154226440	Nonsense_Mutation	C	T	p.Q577*
LUAD	TCGA-55-8511-01	C6orf106	ENST00000374021.1,ENST00000374023.3	chr6	34558285:34558377:34574331:34574681:34622401:34622556,34558285:34558377:34574331:34574681:34614377:34614575,	34574332	34574681	34574444	34574444	Nonsense_Mutation	C	T	p.W250*
LUAD	TCGA-55-8511-01	MFSD11	ENST00000585692.1,ENST00000355954.3,ENST00000588460.1,ENST00000593181.1,ENST00000590514.1,ENST00000336509.4,ENST00000586622.1,ENST00000590070.1	chr17	74771078:74771253:74772487:74772623:74774269:74774347,	74772488	74772623	74772621	74772621	Nonsense_Mutation	C	T	p.Q395*
LUAD	TCGA-55-8511-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372484	175372484	Nonsense_Mutation	G	T	p.Y256*
LUAD	TCGA-55-8511-01	DNAJC8	ENST00000488868.1,ENST00000489277.1,ENST00000263697.4,ENST00000482674.1	chr1	28537081:28537148:28541450:28541507:28555432:28555534,	28541451	28541507	28541501	28541501	Nonsense_Mutation	G	A	p.Q63*
LUAD	TCGA-55-8514-01	LHX2	ENST00000446480.1	chr9	126776239:126776442:126777376:126777804:126783377:126783583,	126777377	126777804	126777716	126777716	Nonsense_Mutation	C	A	p.Y213*
LUAD	TCGA-55-8514-01	LHX2	ENST00000373615.4	chr9	126776239:126776442:126777400:126777804:126783377:126783583,	126777401	126777804	126777716	126777716	Nonsense_Mutation	C	A	p.Y213*
LUAD	TCGA-55-8514-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48794472:48794658:48798504:48798708:48800107:48800266,	48798505	48798708	48798590	48798590	Nonsense_Mutation	G	C	p.S1563*
LUAD	TCGA-55-8616-01	C4orf50	ENST00000324058.5	chr4	5977625:5977682:5981900:5982065:5990073:5990166,	5981901	5982065	5981915	5981915	Nonsense_Mutation	C	A	p.E526*
LUAD	TCGA-55-8616-01	TRAPPC8	ENST00000577474.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29453392:29453501:29454442:29454667:29470697:29470829,	29454443	29454667	29454466	29454466	Nonsense_Mutation	T	A	p.R644*
LUAD	TCGA-55-8616-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30000947	30000947	Nonsense_Mutation	C	A	p.E1556*
LUAD	TCGA-55-8616-01	NID2	ENST00000556572.1,ENST00000541773.1,ENST00000216286.5	chr14	52481771:52481993:52485778:52486012:52486776:52486896,	52485779	52486012	52485784	52485784	Nonsense_Mutation	G	T	p.S1008*
LUAD	TCGA-55-8620-01	CPXM2	ENST00000241305.3	chr10	125521387:125521685:125526488:125526668:125528041:125528238,	125526489	125526668	125526641	125526641	Nonsense_Mutation	C	A	p.G443*
LUAD	TCGA-55-8620-01	KYNU	ENST00000264170.4,ENST00000409512.1	chr2	143787195:143787248:143790804:143790890:143797996:143798227,	143790805	143790890	143790831	143790831	Nonsense_Mutation	G	T	p.G328*
LUAD	TCGA-55-8620-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41243908	41243908	Nonsense_Mutation	C	A	p.E918*
LUAD	TCGA-55-8620-01	PBX3	ENST00000373492.2,ENST00000538998.1,ENST00000342287.5	chr9	128697750:128697886:128722962:128723128:128725290:128725380,	128722963	128723128	128722999	128722999	Nonsense_Mutation	A	T	p.K315*
LUAD	TCGA-55-8620-01	AFG3L2	ENST00000269143.3	chr18	12344130:12344246:12348271:12348382:12351083:12351200,	12348272	12348382	12348284	12348284	Nonsense_Mutation	G	A	p.R551*
LUAD	TCGA-55-8621-01	SPATA17	ENST00000366933.4	chr1	217856599:217856703:217915316:217915440:217947675:217947766,	217915317	217915440	217915384	217915384	Nonsense_Mutation	G	T	p.E155*
LUAD	TCGA-55-8621-01	SPATA17	ENST00000470448.1	chr1	217856599:217856703:217915320:217915440:217947675:217947766,	217915321	217915440	217915384	217915384	Nonsense_Mutation	G	T	p.E155*
LUAD	TCGA-55-A48X-01	LGMN	ENST00000334869.4,ENST00000393218.2,ENST00000557694.1,ENST00000556097.1,ENST00000555699.1,ENST00000557609.1,ENST00000557434.1	chr14	93183724:93183806:93185091:93185189:93198993:93199160,	93185092	93185189	93185138	93185138	Nonsense_Mutation	C	A	p.E64*
LUAD	TCGA-55-A48X-01	LGMN	ENST00000553802.1	chr14	93183724:93183806:93185118:93185189:93198993:93199160,	93185119	93185189	93185138	93185138	Nonsense_Mutation	C	A	p.E64*
LUAD	TCGA-55-A48X-01	PRKD3	ENST00000379066.1,ENST00000494667.1,ENST00000234179.2	chr2	37502909:37502987:37505008:37505132:37506888:37507072,	37505009	37505132	37505047	37505047	Nonsense_Mutation	C	A	p.E420*
LUAD	TCGA-55-A48X-01	TMEM248	ENST00000433271.2,ENST00000341567.4	chr7	66406834:66407011:66409962:66410248:66413530:66413681,	66409963	66410248	66410080	66410080	Nonsense_Mutation	C	T	p.Q93*
LUAD	TCGA-55-A48X-01	EFCAB6	ENST00000404038.1,ENST00000356087.4,ENST00000262726.7,ENST00000358439.4,ENST00000396231.2	chr22	44127578:44127691:44131736:44131873:44151645:44151712,	44131737	44131873	44131813	44131813	Nonsense_Mutation	C	A	p.G190*
LUAD	TCGA-55-A48X-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559178	149559178	Nonsense_Mutation	G	T	p.E977*
LUAD	TCGA-55-A48X-01	PLEKHM3	ENST00000427836.2	chr2	208693026:208693220:208725828:208725986:208773237:208773301,	208725829	208725986	208725974	208725974	Nonsense_Mutation	T	A	p.K655*
LUAD	TCGA-55-A48Y-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223742	51223742	Nonsense_Mutation	G	A	p.Q1336*
LUAD	TCGA-55-A48Y-01	EYA3	ENST00000373863.3,ENST00000540618.1	chr1	28343664:28343750:28362054:28362191:28365349:28365416,	28362055	28362191	28362171	28362171	Nonsense_Mutation	G	C	p.S82*
LUAD	TCGA-55-A48Y-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242344213:242344256:242346951:242347030:242350447:242350545,	242346952	242347030	242347008	242347008	Nonsense_Mutation	C	T	p.Q130*
LUAD	TCGA-55-A48Y-01	PXN	ENST00000397506.3	chr12	120653362:120653464:120653732:120653893:120654075:120654384,	120653733	120653893	120653741	120653741	Nonsense_Mutation	G	A	p.Q39*
LUAD	TCGA-55-A48Y-01	CHD2	ENST00000557381.1,ENST00000555582.2,ENST00000394196.4	chr15	93498652:93498742:93499688:93499879:93510554:93510571,	93499689	93499879	93499827	93499827	Nonsense_Mutation	C	T	p.Q650*
LUAD	TCGA-55-A48Y-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62394760:62394825:62396240:62396484:62396665:62396764,	62396241	62396484	62396347	62396347	Nonsense_Mutation	G	A	p.Q714*
LUAD	TCGA-55-A48Y-01	PTCD3	ENST00000487043.1,ENST00000254630.7	chr2	86361418:86361500:86361961:86362110:86363643:86363685,	86361962	86362110	86361965	86361965	Nonsense_Mutation	C	T	p.Q545*
LUAD	TCGA-55-A48Y-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46595734	46595734	Nonsense_Mutation	C	T	p.Q40*
LUAD	TCGA-55-A48Y-01	CALCOCO1	ENST00000549613.1,ENST00000262059.4,ENST00000550804.1,ENST00000430117.2,ENST00000548263.1,ENST00000549935.2	chr12	54108381:54108477:54108983:54109109:54109576:54109831,	54108984	54109109	54109067	54109067	Nonsense_Mutation	G	A	p.R435*
LUAD	TCGA-55-A48Z-01	MAP3K13	ENST00000443863.1,ENST00000424227.1,ENST00000433092.1,ENST00000535426.1,ENST00000265026.3	chr3	185155332:185155418:185161232:185161424:185165576:185165735,	185161233	185161424	185161273	185161273	Nonsense_Mutation	G	T	p.E234*
LUAD	TCGA-55-A48Z-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299702	107299702	Nonsense_Mutation	C	T	p.W419*
LUAD	TCGA-55-A490-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315745	208315745	Nonsense_Mutation	C	A	p.G479*
LUAD	TCGA-55-A490-01	VPS37C	ENST00000301765.5,ENST00000538036.1,ENST00000536000.1	chr11	60900726:60900809:60901507:60901679:60906208:60906307,	60901508	60901679	60901538	60901538	Nonsense_Mutation	C	A	p.E79*
LUAD	TCGA-55-A490-01	DOCK2	ENST00000256935.8,ENST00000524185.1	chr5	169111199:169111354:169116255:169116337:169122806:169122942,	169116256	169116337	169116265	169116265	Nonsense_Mutation	C	A	p.Y257*
LUAD	TCGA-55-A490-01	ITIH2	ENST00000429820.1,ENST00000379587.4,ENST00000358415.4	chr10	7750984:7751154:7755143:7755248:7759588:7759751,	7755144	7755248	7755207	7755207	Nonsense_Mutation	T	G	p.Y142*
LUAD	TCGA-55-A490-01	ZNF695	ENST00000487338.2	chr1	247130996:247131094:247151426:247151557:247162649:247162742,	247151427	247151557	247151522	247151522	Nonsense_Mutation	C	A	p.E99*
LUAD	TCGA-55-A490-01	ZNF695	ENST00000479214.1,ENST00000366504.2	chr1	247130996:247131094:247151422:247151557:247162649:247162742,	247151423	247151557	247151522	247151522	Nonsense_Mutation	C	A	p.E99*
LUAD	TCGA-55-A490-01	IRAK1	ENST00000393687.2,ENST00000429936.2	chrX	153278035:153278129:153279492:153279729:153281482:153281524,153278786:153278884:153279492:153279729:153281887:153282095,153278786:153278884:153279492:153279729:153281482:153281524,153278493:153278794:153279492:153279729:153281482:153281524,	153279493	153279729	153279570	153279570	Nonsense_Mutation	C	A	p.E488*
LUAD	TCGA-55-A490-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	713021	713021	Nonsense_Mutation	C	G	p.S752*
LUAD	TCGA-55-A490-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235949692	235949692	Nonsense_Mutation	G	A	p.W93*
LUAD	TCGA-55-A490-01	PLEKHM1	ENST00000446609.2,ENST00000430334.3,ENST00000579197.1,ENST00000421073.2	chr17	43535534:43535805:43545574:43545959:43552465:43552751,	43545575	43545959	43545799	43545799	Nonsense_Mutation	G	A	p.Q362*
LUAD	TCGA-55-A490-01	TEX14	ENST00000582740.1,ENST00000389934.3,ENST00000349033.5,ENST00000240361.8	chr17	56690781:56690905:56692592:56692706:56693535:56693666,	56692593	56692706	56692697	56692697	Nonsense_Mutation	C	T	p.W259*
LUAD	TCGA-55-A490-01	COL5A1	ENST00000371817.3	chr9	137681000:137681054:137686927:137686972:137687107:137687161,	137686928	137686972	137686946	137686946	Nonsense_Mutation	G	T	p.G907*
LUAD	TCGA-55-A490-01	SMARCAD1	ENST00000457823.2,ENST00000394961.2,ENST00000509418.1,ENST00000359052.4,ENST00000354268.4	chr4	95197489:95197625:95198172:95198310:95199572:95199668,	95198173	95198310	95198209	95198209	Nonsense_Mutation	C	T	p.Q661*
LUAD	TCGA-55-A490-01	PGLYRP2	ENST00000340880.4	chr19	15582700:15582911:15586348:15587419:15590121:15590246,	15586349	15587419	15587314	15587314	Nonsense_Mutation	G	T	p.S56*
LUAD	TCGA-55-A490-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47038501:47038562:47038717:47038894:47039278:47039436,	47038718	47038894	47038783	47038783	Nonsense_Mutation	G	T	p.E264*
LUAD	TCGA-55-A490-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515056	186515056	Nonsense_Mutation	G	A	p.Q1040*
LUAD	TCGA-55-A490-01	TULP1	ENST00000229771.6	chr6	35477603:35477705:35478637:35478787:35479424:35479583,	35478638	35478787	35478740	35478740	Nonsense_Mutation	C	A	p.E133*
LUAD	TCGA-55-A490-01	PLB1	ENST00000411743.1,ENST00000541605.1,ENST00000479065.1	chr2	28824785:28824831:28825687:28825788:28829362:28829434,	28825688	28825788	28825742	28825742	Nonsense_Mutation	C	T	p.Q899*
LUAD	TCGA-55-A490-01	ADD2	ENST00000413157.2,ENST00000403045.2,ENST00000355733.3,ENST00000264436.4,ENST00000407644.2,ENST00000430656.1	chr2	70905835:70906093:70910722:70910899:70915155:70915254,	70910723	70910899	70910752	70910752	Nonsense_Mutation	C	A	p.E366*
LUAD	TCGA-55-A490-01	WDHD1	ENST00000420358.2,ENST00000360586.3,ENST00000421192.1	chr14	55453936:55454105:55455745:55455930:55457930:55458100,	55455746	55455930	55455827	55455827	Nonsense_Mutation	G	C	p.S482*
LUAD	TCGA-55-A490-01	RABGAP1L	ENST00000347255.2,ENST00000251507.4,ENST00000325589.5,ENST00000367687.1	chr1	174721450:174721492:174780969:174781098:174926593:174926686,	174780970	174781098	174781081	174781081	Nonsense_Mutation	C	T	p.Q94*
LUAD	TCGA-55-A490-01	TBATA	ENST00000299290.1	chr10	72533979:72534113:72536908:72537091:72538312:72538392,72534944:72535026:72536908:72537091:72538312:72538392,	72536909	72537091	72536983	72536983	Nonsense_Mutation	G	A	p.Q206*
LUAD	TCGA-55-A490-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3	chr9	119802097:119802244:119858322:119858430:119903604:119903754,	119858323	119858430	119858357	119858357	Nonsense_Mutation	G	T	p.Y414*
LUAD	TCGA-55-A491-01	GRN	ENST00000053867.3,ENST00000589265.1,ENST00000586443.1	chr17	42428917:42429163:42429382:42429616:42429708:42429939,	42429383	42429616	42429563	42429563	Nonsense_Mutation	C	T	p.Q454*
LUAD	TCGA-55-A491-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56858099:56858251:56865467:56865583:56865656:56865811,	56865468	56865583	56865571	56865571	Nonsense_Mutation	G	T	p.E705*
LUAD	TCGA-55-A491-01	PTBP3	ENST00000343327.2	chr9	115030328:115030475:115060111:115060196:115095749:115095826,	115060112	115060196	115060193	115060193	Nonsense_Mutation	C	A	p.G16*
LUAD	TCGA-55-A492-01	CACNA2D3	ENST00000474759.1,ENST00000468658.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54603980:54604131:54615829:54615904:54661813:54661903,	54615830	54615904	54615854	54615854	Nonsense_Mutation	G	T	p.E305*
LUAD	TCGA-55-A492-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122800956:122801129:122802009:122802165:122805519:122805612,	122802010	122802165	122802054	122802054	Nonsense_Mutation	C	A	p.E325*
LUAD	TCGA-55-A492-01	MEIS1	ENST00000272369.9,ENST00000398506.2,ENST00000437869.1,ENST00000495021.2,ENST00000407092.2,ENST00000488550.1,ENST00000444274.2,ENST00000560281.2	chr2	66668545:66668596:66670033:66670180:66691240:66691352,	66670034	66670180	66670040	66670040	Nonsense_Mutation	G	T	p.E164*
LUAD	TCGA-55-A492-01	PCBP2	ENST00000359462.5,ENST00000546652.2,ENST00000455667.3,ENST00000546463.1,ENST00000447282.1,ENST00000541275.1,ENST00000551104.1,ENST00000550192.1,ENST00000359282.5,ENST00000437231.1,ENST00000552296.2,ENST00000439930.3,ENST00000552819.1,ENST00000549863.1,ENST00000562264.1,ENST00000603815.1,ENST00000548933.1	chr12	53849130:53849154:53849244:53849277:53849668:53849734,	53849245	53849277	53849272	53849272	Nonsense_Mutation	G	T	p.E41*
LUAD	TCGA-55-A492-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47822244:47822397:47831102:47831981:47832750:47832906,	47831103	47831981	47831535	47831535	Nonsense_Mutation	G	T	p.E1850*
LUAD	TCGA-55-A492-01	ST8SIA2	ENST00000268164.3,ENST00000539113.1,ENST00000555434.1	chr15	92981582:92981840:92987865:92988159:93007329:93007614,	92987866	92988159	92988034	92988034	Nonsense_Mutation	G	A	p.W239*
LUAD	TCGA-55-A492-01	CTNNA1	ENST00000518585.1,ENST00000518825.1,ENST00000520158.1,ENST00000519309.1,ENST00000355078.5,ENST00000521724.1,ENST00000518910.1,ENST00000302763.7	chr5	138145726:138145893:138147871:138147991:138160218:138160277,	138147872	138147991	138147983	138147983	Nonsense_Mutation	A	T	p.R194*
LUAD	TCGA-55-A493-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45792225:45792366:45794974:45795233:45798212:45798451,	45794975	45795233	45795001	45795001	Nonsense_Mutation	G	A	p.R363*
LUAD	TCGA-55-A493-01	EIF2AK1	ENST00000446699.1,ENST00000463213.1,ENST00000199389.6,ENST00000431744.1	chr7	6088437:6088475:6089542:6089676:6094176:6094266,	6089543	6089676	6089620	6089620	Nonsense_Mutation	C	A	p.E112*
LUAD	TCGA-55-A494-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124184	12124184	Nonsense_Mutation	A	T	p.K1386*
LUAD	TCGA-55-A494-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052923	50052923	Nonsense_Mutation	C	A	p.S585*
LUAD	TCGA-55-A494-01	NLRC5	ENST00000538805.1,ENST00000262510.6,ENST00000545081.1,ENST00000308149.7,ENST00000538110.1,ENST00000539144.1,ENST00000436936.1	chr16	57061983:57062067:57062213:57062297:57063684:57063768,	57062214	57062297	57062239	57062239	Nonsense_Mutation	C	T	p.R729*
LUAD	TCGA-55-A494-01	COL1A1	ENST00000225964.5,ENST00000471344.1	chr17	48272407:48272461:48272592:48272691:48272794:48272839,	48272593	48272691	48272649	48272649	Nonsense_Mutation	G	A	p.R415*
LUAD	TCGA-55-A4DF-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6,ENST00000530092.1	chr19	1054778:1054877:1055095:1055350:1055905:1055938,	1055096	1055350	1055121	1055121	Nonsense_Mutation	G	T	p.E1326*
LUAD	TCGA-55-A4DF-01	PTPRT	ENST00000373198.4,ENST00000373187.1,ENST00000356100.2,ENST00000373193.3,ENST00000373201.1,ENST00000373184.1,ENST00000373190.1	chr20	40710521:40710657:40713321:40713485:40714367:40714493,	40713322	40713485	40713347	40713347	Nonsense_Mutation	C	A	p.E1393*
LUAD	TCGA-55-A4DF-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48080771	48080771	Nonsense_Mutation	C	G	p.S286*
LUAD	TCGA-55-A4DF-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120884	12120884	Nonsense_Mutation	C	T	p.Q286*
LUAD	TCGA-55-A4DF-01	KIAA1257	ENST00000511438.1,ENST00000515659.1,ENST00000510149.1,ENST00000265068.5	chr3	128695855:128695909:128696887:128697028:128706458:128706672,	128696888	128697028	128697005	128697005	Nonsense_Mutation	G	A	p.Q231*
LUAD	TCGA-55-A4DF-01	SLC38A9	ENST00000396865.2,ENST00000511233.1,ENST00000514806.1,ENST00000513993.1,ENST00000503891.1,ENST00000539768.1,ENST00000318672.3	chr5	54965663:54965707:54968390:54968523:54993673:54993786,	54968391	54968523	54968510	54968510	Nonsense_Mutation	C	A	p.E43*
LUAD	TCGA-55-A4DF-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157929346:157929387:157930985:157931207:157959622:157959983,	157930986	157931207	157931118	157931118	Nonsense_Mutation	C	A	p.E334*
LUAD	TCGA-55-A4DF-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153654	19153654	Nonsense_Mutation	G	C	p.S384*
LUAD	TCGA-55-A4DF-01	PIWIL1	ENST00000245255.3	chr12	130840097:130840212:130841462:130841650:130842025:130842098,	130841463	130841650	130841562	130841562	Nonsense_Mutation	C	T	p.R502*
LUAD	TCGA-55-A4DF-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17744529	17744529	Nonsense_Mutation	C	G	p.S747*
LUAD	TCGA-55-A4DF-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078703	170078703	Nonsense_Mutation	C	G	p.S195*
LUAD	TCGA-55-A4DF-01	USP43	ENST00000570827.2,ENST00000574408.1,ENST00000570475.1,ENST00000285199.7	chr17	9603488:9603566:9604435:9604562:9604668:9605002,	9604436	9604562	9604539	9604539	Nonsense_Mutation	C	T	p.Q236*
LUAD	TCGA-55-A4DF-01	OXR1	ENST00000445937.1,ENST00000442977.2,ENST00000531443.1,ENST00000452423.2,ENST00000517566.2	chr8	107531170:107531367:107691437:107691520:107695426:107695534,	107691438	107691520	107691491	107691491	Nonsense_Mutation	C	T	p.Q92*
LUAD	TCGA-55-A4DF-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516607	195516607	Nonsense_Mutation	G	C	p.S615*
LUAD	TCGA-55-A4DF-01	ALKBH1	ENST00000216489.3	chr14	78146227:78146313:78161080:78161243:78170711:78170795,	78161081	78161243	78161091	78161091	Nonsense_Mutation	C	A	p.E149*
LUAD	TCGA-55-A4DF-01	TBC1D32	ENST00000275159.6,ENST00000464622.1,ENST00000398212.2	chr6	121576473:121576556:121577229:121577431:121600266:121600391,	121577230	121577431	121577382	121577382	Nonsense_Mutation	C	A	p.E595*
LUAD	TCGA-55-A4DF-01	LAMA5	ENST00000252999.3	chr20	60897074:60897224:60897324:60897505:60897713:60897814,	60897325	60897505	60897353	60897353	Nonsense_Mutation	G	C	p.Y2106*
LUAD	TCGA-55-A4DF-01	TSNAXIP1	ENST00000565339.1,ENST00000466164.1,ENST00000487120.1,ENST00000415766.3,ENST00000568990.1,ENST00000431934.2,ENST00000388833.3,ENST00000569504.1,ENST00000561639.1	chr16	67860594:67860747:67860865:67860975:67861151:67861278,	67860866	67860975	67860941	67860941	Nonsense_Mutation	C	T	p.Q490*
LUAD	TCGA-55-A4DG-01	ZNF341	ENST00000483118.1	chr20	32354656:32354847:32357889:32358098:32371537:32371670,	32357890	32358098	32357950	32357950	Nonsense_Mutation	G	T	p.E492*
LUAD	TCGA-55-A4DG-01	PLAT	ENST00000220809.4,ENST00000524009.1,ENST00000520523.1,ENST00000521694.1,ENST00000429089.2,ENST00000270189.6,ENST00000519510.1	chr8	42040236:42040408:42046451:42046589:42048889:42048932,42045423:42045534:42046451:42046589:42048889:42048932,	42046452	42046589	42046466	42046466	Nonsense_Mutation	G	C	p.S80*
LUAD	TCGA-55-A4DG-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17068662:17068725:17081700:17081843:17085896:17086068,17068662:17068725:17081700:17081843:17085906:17086068,	17081701	17081843	17081753	17081753	Nonsense_Mutation	G	A	p.Q768*
LUAD	TCGA-55-A4DG-01	NTNG1	ENST00000370067.1,ENST00000370074.4,ENST00000370071.2,ENST00000370065.1,ENST00000370068.1,ENST00000294649.4,ENST00000370061.3,ENST00000370073.2,ENST00000370066.1	chr1	107866903:107867544:107937775:107937948:107950303:107950330,	107937776	107937948	107937887	107937887	Nonsense_Mutation	T	A	p.Y333*
LUAD	TCGA-55-A4DG-01	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71576136	71576136	Nonsense_Mutation	C	T	p.R18*
LUAD	TCGA-55-A4DG-01	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71576136	71576136	Nonsense_Mutation	C	T	p.R18*
LUAD	TCGA-62-8394-01	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000541695.1,ENST00000542762.1,ENST00000540270.1,ENST00000318197.6	chr12	18854625:18854710:18858099:18858249:18865775:18865844,	18858100	18858249	18858159	18858159	Nonsense_Mutation	C	A	p.G269*
LUAD	TCGA-62-8395-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113685895:113686104:113688379:113688559:113694326:113694422,	113688380	113688559	113688419	113688419	Nonsense_Mutation	G	T	p.S475*
LUAD	TCGA-62-8395-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000342933.3,ENST00000400111.3,ENST00000544123.1,ENST00000545076.1	chr18	5438033:5438109:5443836:5443879:5445138:5445243,	5443837	5443879	5443840	5443840	Nonsense_Mutation	G	A	p.R176*
LUAD	TCGA-62-8395-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473731	56473731	Nonsense_Mutation	G	A	p.Q1866*
LUAD	TCGA-62-8398-01	CCDC144A	ENST00000360495.5,ENST00000360524.8,ENST00000340621.5,ENST00000443444.2,ENST00000399273.1	chr17	16610782:16610856:16612109:16612949:16614992:16615129,	16612110	16612949	16612935	16612935	Nonsense_Mutation	C	T	p.Q522*
LUAD	TCGA-62-8398-01	ZRANB3	ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	136023103:136023256:136026531:136026711:136029337:136029457,	136026532	136026711	136026550	136026550	Nonsense_Mutation	C	T	p.W456*
LUAD	TCGA-62-8399-01	VARS	ENST00000461328.1,ENST00000444930.2,ENST00000375663.3	chr6	31750872:31750963:31751990:31752085:31752170:31752212,	31751991	31752085	31752074	31752074	Nonsense_Mutation	C	A	p.E530*
LUAD	TCGA-62-8399-01	LRRCC1	ENST00000360375.3,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86027334:86027510:86027609:86027819:86035647:86035836,	86027610	86027819	86027781	86027781	Nonsense_Mutation	C	T	p.Q278*
LUAD	TCGA-62-8399-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586314	143586314	Nonsense_Mutation	C	T	p.R13*
LUAD	TCGA-62-8399-01	SYNJ1	ENST00000357345.3,ENST00000429236.1,ENST00000382491.3,ENST00000382499.2,ENST00000433931.2,ENST00000322229.7,ENST00000456084.1	chr21	34067535:34067592:34072147:34072415:34074270:34074357,	34072148	34072415	34072277	34072277	Nonsense_Mutation	G	C	p.S156*
LUAD	TCGA-62-8399-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58621248:58621317:58621683:58621782:58622702:58622810,	58621684	58621782	58621689	58621689	Nonsense_Mutation	G	A	p.Q102*
LUAD	TCGA-62-8399-01	ADAL	ENST00000428046.3	chr15	43635191:43635273:43638051:43638178:43641104:43641243,	43638052	43638178	43638098	43638098	Nonsense_Mutation	G	T	p.E158*
LUAD	TCGA-62-A46O-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35092125	35092125	Nonsense_Mutation	G	A	p.Q587*
LUAD	TCGA-62-A46O-01	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329360	56329360	Nonsense_Mutation	C	A	p.E61*
LUAD	TCGA-62-A46O-01	PPIB	ENST00000300026.3	chr15	64448976:64449108:64452302:64452396:64454239:64454353,	64452303	64452396	64452333	64452333	Nonsense_Mutation	C	A	p.G105*
LUAD	TCGA-62-A46O-01	SF3B1	ENST00000335508.6	chr2	198273092:198273305:198274493:198274731:198281464:198281635,	198274494	198274731	198274703	198274703	Nonsense_Mutation	C	T	p.W232*
LUAD	TCGA-62-A46O-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938718	76938718	Nonsense_Mutation	G	C	p.S677*
LUAD	TCGA-62-A46O-01	KLK6	ENST00000391808.1,ENST00000594641.1,ENST00000376851.3,ENST00000597379.1,ENST00000310157.2,ENST00000599881.1,ENST00000456750.2,ENST00000599690.1	chr19	51462413:51462572:51464999:51465136:51466557:51466681,	51465000	51465136	51465018	51465018	Nonsense_Mutation	G	T	p.Y188*
LUAD	TCGA-62-A46O-01	FAM83A	ENST00000276699.6,ENST00000536633.1,ENST00000518448.1,ENST00000521468.1,ENST00000318462.6	chr8	124195397:124195576:124204042:124204210:124206263:124206388,	124204043	124204210	124204100	124204100	Nonsense_Mutation	G	T	p.E180*
LUAD	TCGA-62-A46O-01	TRAPPC9	ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	141310567:141310713:141321346:141321473:141370148:141370292,	141321347	141321473	141321447	141321447	Nonsense_Mutation	C	A	p.E606*
LUAD	TCGA-62-A46O-01	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016242	167016242	Nonsense_Mutation	A	T	p.L577*
LUAD	TCGA-62-A46P-01	NRF1	ENST00000223190.4,ENST00000393231.3,ENST00000393230.2,ENST00000539636.1,ENST00000353868.4,ENST00000311967.2,ENST00000393232.1	chr7	129351314:129351416:129357058:129357216:129367080:129367205,	129357059	129357216	129357122	129357122	Nonsense_Mutation	G	T	p.E377*
LUAD	TCGA-62-A46R-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198*
LUAD	TCGA-62-A46R-01	CAPN6	ENST00000324068.1	chrX	110494776:110494970:110495534:110495727:110496235:110496444,	110495535	110495727	110495656	110495656	Nonsense_Mutation	A	T	p.L193*
LUAD	TCGA-62-A46R-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470312	70470312	Nonsense_Mutation	G	T	p.S348*
LUAD	TCGA-62-A46S-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232733	99232733	Nonsense_Mutation	T	A	p.Y172*
LUAD	TCGA-62-A470-01	HSPG2	ENST00000430507.1,ENST00000374695.3	chr1	22175385:22175524:22176533:22176685:22176855:22176991,	22176534	22176685	22176570	22176570	Nonsense_Mutation	C	T	p.W2470*
LUAD	TCGA-62-A470-01	C7	ENST00000313164.9	chr5	40937653:40937792:40945299:40945470:40947703:40947947,	40945300	40945470	40945415	40945415	Nonsense_Mutation	C	A	p.S228*
LUAD	TCGA-62-A470-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42357036	42357036	Nonsense_Mutation	C	A	p.S403*
LUAD	TCGA-62-A471-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726241	71726241	Nonsense_Mutation	G	A	p.R770*
LUAD	TCGA-62-A471-01	IGSF9B	ENST00000321016.8,ENST00000527648.2,ENST00000533871.2	chr11	133805511:133805657:133805947:133806089:133807270:133807388,	133805948	133806089	133805952	133805952	Nonsense_Mutation	G	A	p.Q273*
LUAD	TCGA-64-1676-01	MAPK4	ENST00000400384.2,ENST00000540640.1	chr18	48241448:48241593:48248307:48248469:48252331:48252545,	48248308	48248469	48248367	48248367	Nonsense_Mutation	G	T	p.E251*
LUAD	TCGA-64-1676-01	CSMD3	ENST00000343508.3,ENST00000297405.5,ENST00000352409.3	chr8	113966912:113966990:113988065:113988377:114031295:114031408,	113988066	113988377	113988231	113988231	Nonsense_Mutation	C	A	p.E393*
LUAD	TCGA-64-1676-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189858959:189859058:189859266:189859320:189859449:189859557,	189859267	189859320	189859297	189859297	Nonsense_Mutation	G	T	p.E442*
LUAD	TCGA-64-1676-01	PDE3A	ENST00000359062.3,ENST00000544307.1	chr12	20799684:20799884:20801621:20801825:20803378:20803534,	20801622	20801825	20801733	20801733	Nonsense_Mutation	G	T	p.E893*
LUAD	TCGA-64-1676-01	DGKI	ENST00000460662.2	chr7	137154295:137154365:137172355:137172435:137206611:137206712,	137172356	137172435	137172361	137172361	Nonsense_Mutation	G	A	p.Q493*
LUAD	TCGA-64-1676-01	THBS2	ENST00000366787.3	chr6	169646291:169646376:169648511:169649068:169650827:169650901,	169648512	169649068	169648571	169648571	Nonsense_Mutation	G	A	p.Q184*
LUAD	TCGA-64-1676-01	ATRNL1	ENST00000355044.3	chr10	116925317:116925405:116930794:116931050:116975454:116975638,	116930795	116931050	116930936	116930936	Nonsense_Mutation	G	A	p.W382*
LUAD	TCGA-64-1676-01	SLC2A9	ENST00000505104.1,ENST00000309065.3,ENST00000506583.1	chr4	10020598:10020697:10027527:10027630:10041753:10041834,	10027528	10027630	10027563	10027563	Nonsense_Mutation	C	A	p.E10*
LUAD	TCGA-64-1676-01	MED12L	ENST00000488092.1	chr3	151112443:151112655:151134099:151134210:151148086:151148168,	151134100	151134210	151134112	151134112	Nonsense_Mutation	C	T	p.Q2069*
LUAD	TCGA-64-1676-01	CIZ1	ENST00000357558.5,ENST00000277465.4	chr9	130940987:130941183:130941267:130941694:130942693:130942802,	130941268	130941694	130941294	130941294	Nonsense_Mutation	C	A	p.E398*
LUAD	TCGA-64-1677-01	SRP68	ENST00000592704.1,ENST00000307877.2,ENST00000355113.5,ENST00000539137.1	chr17	74043986:74044051:74046508:74046607:74053483:74053624,	74046509	74046607	74046604	74046604	Nonsense_Mutation	C	A	p.E328*
LUAD	TCGA-64-1677-01	SCAMP3	ENST00000465312.1,ENST00000462151.1	chr1	155228616:155228683:155230120:155230241:155230327:155230450,	155230121	155230241	155230148	155230148	Nonsense_Mutation	G	A	p.Q95*
LUAD	TCGA-64-1677-01	ANKRD16	ENST00000380094.5,ENST00000380092.4	chr10	5920084:5920250:5922260:5922339:5924968:5925130,	5922261	5922339	5922263	5922263	Nonsense_Mutation	G	C	p.S309*
LUAD	TCGA-64-1678-01	ADAMTS1	ENST00000284984.3	chr21	28212193:28212380:28212594:28212881:28213316:28213484,	28212595	28212881	28212677	28212677	Nonsense_Mutation	C	T	p.W528*
LUAD	TCGA-64-1678-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000505747.1	chr2	39996040:39996233:39996849:39997259:39998644:39998780,39995563:39995641:39996849:39997259:39998644:39998780,	39996850	39997259	39997215	39997215	Nonsense_Mutation	C	A	p.G103*
LUAD	TCGA-64-1678-01	THUMPD2	ENST00000530522.1	chr2	39995563:39995641:39996897:39997259:39998654:39998780,	39996898	39997259	39997215	39997215	Nonsense_Mutation	C	A	p.G103*
LUAD	TCGA-64-1678-01	SEC24B	ENST00000265175.5,ENST00000504968.2,ENST00000399100.2	chr4	110447381:110447555:110448477:110448588:110451444:110451620,	110448478	110448588	110448546	110448546	Nonsense_Mutation	G	T	p.G1012*
LUAD	TCGA-64-1678-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101224	168101224	Nonsense_Mutation	G	T	p.E1108*
LUAD	TCGA-64-1678-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751288	102751288	Nonsense_Mutation	C	T	p.Q117*
LUAD	TCGA-64-1678-01	CLN3	ENST00000565778.1	chr16	28495326:28495439:28498776:28498862:28500610:28500707,	28498777	28498862	28498827	28498827	Nonsense_Mutation	C	T	p.W110*
LUAD	TCGA-64-1678-01	PRKAB1	ENST00000229328.5,ENST00000545223.1,ENST00000545870.1,ENST00000541640.1,ENST00000540121.1	chr12	120111768:120111862:120112144:120112259:120114341:120114475,	120112145	120112259	120112187	120112187	Nonsense_Mutation	C	T	p.Q154*
LUAD	TCGA-64-1679-01	HLA-DQB1	ENST00000399084.1,ENST00000434651.2,ENST00000374943.4	chr6	32629123:32629234:32629743:32630025:32632574:32632844,	32629744	32630025	32629750	32629750	Nonsense_Mutation	C	A	p.E219*
LUAD	TCGA-64-1679-01	HLA-DQB1	ENST00000484729.2	chr6	32629123:32629234:32629743:32629862:32632574:32632844,	32629744	32629862	32629750	32629750	Nonsense_Mutation	C	A	p.E219*
LUAD	TCGA-64-1679-01	RBM6	ENST00000421682.1	chr3	50107887:50107985:50112605:50112763:50114440:50114680,	50112606	50112763	50112758	50112758	Nonsense_Mutation	G	T	p.E949*
LUAD	TCGA-64-1679-01	RBM6	ENST00000442092.1,ENST00000539992.1,ENST00000419610.1,ENST00000443081.1,ENST00000422955.1,ENST00000454079.1,ENST00000266022.4	chr3	50107887:50107985:50112633:50112763:50114440:50114680,	50112634	50112763	50112758	50112758	Nonsense_Mutation	G	T	p.E949*
LUAD	TCGA-64-1679-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450278	55450278	Nonsense_Mutation	C	A	p.E637*
LUAD	TCGA-64-1679-01	GTF2IRD1	ENST00000489094.1,ENST00000424337.2,ENST00000265755.3,ENST00000476977.1	chr7	73922404:73922533:73927159:73927301:73929770:73929926,	73927160	73927301	73927187	73927187	Nonsense_Mutation	G	T	p.E51*
LUAD	TCGA-64-1679-01	ZNF430	ENST00000599548.1,ENST00000261560.5,ENST00000594110.1	chr19	21205594:21205687:21216261:21216388:21216891:21216990,	21216262	21216388	21216307	21216307	Nonsense_Mutation	G	T	p.E48*
LUAD	TCGA-64-1679-01	TMED1	ENST00000591157.1	chr19	10945609:10945793:10945966:10946029:10946684:10946877,	10945967	10946029	10945981	10945981	Nonsense_Mutation	G	A	p.Q78*
LUAD	TCGA-64-1679-01	TMED1	ENST00000591695.1	chr19	10943726:10943889:10945931:10946029:10946684:10946871,	10945932	10946029	10945981	10945981	Nonsense_Mutation	G	A	p.Q78*
LUAD	TCGA-64-1679-01	MASP1	ENST00000392472.2	chr3	186978557:186978660:186980330:186980508:187003612:187003796,186978557:186978660:186980330:186980508:187009415:187009485,	186980331	186980508	186980341	186980341	Nonsense_Mutation	G	T	p.Y135*
LUAD	TCGA-64-1680-01	SEC61A1	ENST00000243253.3,ENST00000424880.2,ENST00000464451.1	chr3	127783719:127783880:127785796:127785994:127786263:127786455,	127785797	127785994	127785935	127785935	Nonsense_Mutation	C	T	p.Q306*
LUAD	TCGA-64-1680-01	SF1	ENST00000443908.1	chr11	64534538:64534551:64534663:64534747:64535042:64535118,	64534664	64534747	64534716	64534716	Nonsense_Mutation	G	T	p.Y450*
LUAD	TCGA-64-1680-01	SF1	ENST00000448404.1,ENST00000413725.1,ENST00000377394.3	chr11	64534538:64534551:64534663:64534723:64535042:64535118,64534538:64534551:64534663:64534723:64535038:64535089,	64534664	64534723	64534716	64534716	Nonsense_Mutation	G	T	p.Y450*
LUAD	TCGA-64-1680-01	SF1	ENST00000486867.1	chr11	64534538:64534551:64534663:64534718:64535042:64535118,	64534664	64534718	64534716	64534716	Nonsense_Mutation	G	T	p.Y450*
LUAD	TCGA-64-1681-01	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324373	158324373	Nonsense_Mutation	G	T	p.E89*
LUAD	TCGA-64-5774-01	DDX1	ENST00000381341.2,ENST00000233084.3	chr2	15739792:15739840:15742671:15742755:15743315:15743399,	15742672	15742755	15742716	15742716	Nonsense_Mutation	G	T	p.E118*
LUAD	TCGA-64-5775-01	RAI14	ENST00000514527.1,ENST00000512625.1,ENST00000265109.3,ENST00000513974.1,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000510319.1,ENST00000503222.1,ENST00000503673.1,ENST00000508777.1,ENST00000507276.1,ENST00000514873.1,ENST00000428746.2,ENST00000502736.1,ENST00000508315.1,ENST00000397449.1,ENST00000509247.1,ENST00000504052.1	chr5	34796043:34796132:34803816:34803881:34807904:34807925,	34803817	34803881	34803879	34803879	Nonsense_Mutation	C	T	p.Q107*
LUAD	TCGA-64-5778-01	IFI16	ENST00000483916.1	chr1	159015086:159015254:159021468:159023514:159024610:159024914,159019221:159019389:159021468:159023514:159024610:159024914,	159021469	159023514	159021490	159021490	Nonsense_Mutation	G	T	p.E563*
LUAD	TCGA-64-5778-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000368132.3,ENST00000295809.7	chr1	159019221:159019389:159021468:159021888:159023322:159023514,	159021469	159021888	159021490	159021490	Nonsense_Mutation	G	T	p.E563*
LUAD	TCGA-64-5778-01	TMPRSS2	ENST00000398585.3,ENST00000454499.1,ENST00000458356.1,ENST00000424093.1,ENST00000332149.5	chr21	42861433:42861520:42866282:42866505:42870045:42870116,	42866283	42866505	42866466	42866466	Nonsense_Mutation	C	A	p.G56*
LUAD	TCGA-64-5778-01	ISOC2	ENST00000085068.3	chr19	55966626:55966697:55967002:55967212:55967715:55967856,55966626:55966745:55967002:55967212:55967715:55967856,	55967003	55967212	55967071	55967071	Nonsense_Mutation	C	A	p.E94*
LUAD	TCGA-64-5778-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91488265:91488293:91489843:91490144:91491025:91491120,	91489844	91490144	91489890	91489890	Nonsense_Mutation	C	T	p.Q401*
LUAD	TCGA-64-5778-01	MAPKAPK5	ENST00000550735.2,ENST00000553053.1,ENST00000551404.2,ENST00000549875.1	chr12	112321384:112321572:112323719:112323840:112326291:112326329,	112323720	112323840	112323739	112323739	Nonsense_Mutation	G	T	p.E290*
LUAD	TCGA-64-5778-01	SLC16A3	ENST00000584781.1	chr17	80194004:80194107:80194604:80194720:80195013:80195053,	80194605	80194720	80194624	80194624	Nonsense_Mutation	C	A	p.C81*
LUAD	TCGA-64-5778-01	SLC16A3	ENST00000583237.1,ENST00000582946.1,ENST00000392339.1,ENST00000580189.1,ENST00000392341.1,ENST00000584689.1,ENST00000581287.1,ENST00000582743.1,ENST00000580098.1,ENST00000578522.1,ENST00000577650.1	chr17	80194004:80194107:80194604:80194748:80195013:80195053,	80194605	80194748	80194624	80194624	Nonsense_Mutation	C	A	p.C81*
LUAD	TCGA-64-5779-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450055	29450055	Nonsense_Mutation	C	G	p.S156*
LUAD	TCGA-64-5779-01	TLN1	ENST00000314888.9,ENST00000540444.1	chr9	35699028:35699153:35699352:35699458:35699970:35700078,	35699353	35699458	35699425	35699425	Nonsense_Mutation	G	A	p.Q2268*
LUAD	TCGA-64-5779-01	GOLIM4	ENST00000309027.4	chr3	167750307:167750640:167754623:167754782:167758573:167758657,167750307:167750640:167754623:167754782:167759179:167759262,	167754624	167754782	167754671	167754671	Nonsense_Mutation	G	A	p.Q266*
LUAD	TCGA-64-5781-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101585892:101586188:101589246:101589303:101596338:101596388,	101589247	101589303	101589249	101589249	Nonsense_Mutation	G	A	p.Q409*
LUAD	TCGA-64-5781-01	UBXN1	ENST00000534176.1,ENST00000529640.1,ENST00000301935.5,ENST00000525717.1	chr11	62444084:62444111:62444284:62444477:62444989:62445031,	62444285	62444477	62444318	62444318	Nonsense_Mutation	C	A	p.E271*
LUAD	TCGA-64-5781-01	EPHA3	ENST00000336596.2	chr3	89499326:89499520:89521613:89521769:89528546:89528809,	89521614	89521769	89521734	89521734	Nonsense_Mutation	C	G	p.Y937*
LUAD	TCGA-64-5781-01	CRISPLD1	ENST00000520277.1	chr8	75897104:75897155:75898160:75898480:75924667:75924724,	75898161	75898480	75898355	75898355	Nonsense_Mutation	G	T	p.E45*
LUAD	TCGA-64-5781-01	PFKFB3	ENST00000536985.1	chr10	6259097:6259154:6261481:6261656:6262620:6262828,	6261482	6261656	6261507	6261507	Nonsense_Mutation	C	G	p.S155*
LUAD	TCGA-64-5781-01	HPS4	ENST00000466781.1,ENST00000439453.1,ENST00000398145.2,ENST00000398141.1,ENST00000464362.1,ENST00000336873.5,ENST00000422379.2,ENST00000402105.3,ENST00000429411.1,ENST00000496385.1	chr22	26868797:26868905:26872958:26873102:26875230:26875321,	26872959	26873102	26872994	26872994	Nonsense_Mutation	T	A	p.K81*
LUAD	TCGA-64-5781-01	PDE1A	ENST00000351439.5,ENST00000409365.1	chr2	183104836:183105019:183129027:183129141:183291304:183291749,	183129028	183129141	183129074	183129074	Nonsense_Mutation	C	A	p.E57*
LUAD	TCGA-64-5781-01	ASIC2	ENST00000359872.6,ENST00000225823.2	chr17	31342988:31343057:31344622:31344702:31348236:31348328,	31344623	31344702	31344625	31344625	Nonsense_Mutation	C	A	p.E507*
LUAD	TCGA-64-5781-01	NCK2	ENST00000233154.4,ENST00000393349.2	chr2	106471506:106471745:106497783:106498505:106509437:106509632,	106497784	106498505	106498470	106498470	Nonsense_Mutation	G	T	p.E305*
LUAD	TCGA-64-5781-01	CPA5	ENST00000431780.2	chr7	130003281:130003350:130007212:130007412:130008250:130008438,	130007213	130007412	130007240	130007240	Nonsense_Mutation	C	A	p.S289*
LUAD	TCGA-64-5781-01	CPA5	ENST00000495736.1	chr7	130003281:130003350:130007212:130007831:130008250:130008438,	130007213	130007831	130007240	130007240	Nonsense_Mutation	C	A	p.S289*
LUAD	TCGA-64-5781-01	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367361	105367361	Nonsense_Mutation	C	G	p.S429*
LUAD	TCGA-64-5815-01	TEX14	ENST00000582740.1,ENST00000389934.3,ENST00000349033.5,ENST00000240361.8	chr17	56679166:56679317:56679760:56679951:56682338:56682490,	56679761	56679951	56679854	56679854	Nonsense_Mutation	G	T	p.Y478*
LUAD	TCGA-64-5815-01	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231656	230231656	Nonsense_Mutation	C	A	p.E679*
LUAD	TCGA-64-5815-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000522140.1,ENST00000265293.4,ENST00000393895.3,ENST00000524038.1	chr5	167871498:167871590:167880972:167881105:167882360:167882525,	167880973	167881105	167881064	167881064	Nonsense_Mutation	G	T	p.E873*
LUAD	TCGA-67-3770-01	COQ7	ENST00000568985.1,ENST00000544894.2,ENST00000321998.5,ENST00000569127.1	chr16	19083249:19083428:19087042:19087182:19088627:19088696,19085242:19085357:19087042:19087182:19088627:19088696,	19087043	19087182	19087069	19087069	Nonsense_Mutation	G	T	p.E132*
LUAD	TCGA-67-3770-01	CXorf40B	ENST00000355203.2,ENST00000370406.3,ENST00000370409.3,ENST00000370404.1,ENST00000462691.1	chrX	149100806:149100985:149101839:149102121:149102222:149102355,	149101840	149102121	149101918	149101918	Nonsense_Mutation	C	A	p.E59*
LUAD	TCGA-67-3770-01	ASPA	ENST00000456349.2,ENST00000263080.2	chr17	3379427:3379689:3384896:3385092:3386792:3386886,	3384897	3385092	3385072	3385072	Nonsense_Mutation	C	T	p.Q138*
LUAD	TCGA-67-3770-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151960100:151960215:151962122:151962294:151970789:151970952,	151962123	151962294	151962197	151962197	Nonsense_Mutation	G	T	p.C370*
LUAD	TCGA-67-3771-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42355849	42355849	Nonsense_Mutation	T	A	p.Y7*
LUAD	TCGA-67-3771-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76372111	76372111	Nonsense_Mutation	C	A	p.E176*
LUAD	TCGA-67-3771-01	ACADM	ENST00000532207.1,ENST00000529059.1,ENST00000526129.1,ENST00000525808.1,ENST00000541113.1,ENST00000370834.5,ENST00000420607.2,ENST00000526196.1,ENST00000543667.1,ENST00000370841.4	chr1	76215181:76215244:76216135:76216231:76226806:76226893,	76216136	76216231	76216217	76216217	Nonsense_Mutation	A	T	p.K311*
LUAD	TCGA-67-3771-01	NELL2	ENST00000549668.1,ENST00000452445.2,ENST00000333837.4,ENST00000551601.1,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	45000951:45001047:45004630:45004753:45059266:45059392,	45004631	45004753	45004705	45004705	Nonsense_Mutation	A	T	p.L498*
LUAD	TCGA-67-3771-01	VWA8	ENST00000379310.3	chr13	42277438:42277547:42293726:42293878:42295505:42295711,	42293727	42293878	42293845	42293845	Nonsense_Mutation	G	A	p.R1000*
LUAD	TCGA-67-3771-01	AURKC	ENST00000601799.1,ENST00000596375.1	chr19	57743909:57744048:57744827:57744976:57746251:57746426,57743985:57744053:57744827:57744976:57746251:57746426,	57744828	57744976	57744834	57744834	Nonsense_Mutation	G	T	p.E148*
LUAD	TCGA-67-3771-01	CREB5	ENST00000409603.1,ENST00000396298.2,ENST00000396299.2,ENST00000396300.2,ENST00000357727.2	chr7	28843815:28844139:28848803:28849031:28857687:28857796,	28848804	28849031	28848855	28848855	Nonsense_Mutation	C	T	p.Q360*
LUAD	TCGA-67-3771-01	ENTPD1	ENST00000371207.3,ENST00000543964.1,ENST00000453258.2,ENST00000371205.4,ENST00000539125.1,ENST00000371203.5,ENST00000483213.1	chr10	97604331:97604392:97605113:97605353:97607202:97607256,	97605114	97605353	97605318	97605318	Nonsense_Mutation	C	T	p.Q122*
LUAD	TCGA-67-3771-01	HRASLS5	ENST00000540857.1,ENST00000539221.1,ENST00000538712.1,ENST00000301790.4	chr11	63233631:63233844:63235828:63235937:63258358:63258411,63233631:63233844:63235828:63235937:63256342:63256448,	63235829	63235937	63235916	63235916	Nonsense_Mutation	C	A	p.G123*
LUAD	TCGA-67-3771-01	MEFV	ENST00000536379.1,ENST00000537682.1,ENST00000542898.1,ENST00000339854.4,ENST00000572244.1,ENST00000539145.1,ENST00000219596.1,ENST00000538326.1,ENST00000541159.1,ENST00000536980.1	chr16	3294253:3294286:3294472:3294588:3296524:3296547,	3294473	3294588	3294475	3294475	Nonsense_Mutation	G	C	p.S575*
LUAD	TCGA-67-3771-01	TTYH2	ENST00000529107.1,ENST00000269346.4,ENST00000578825.1	chr17	72227026:72227138:72233432:72233653:72239512:72239608,	72233433	72233653	72233616	72233616	Nonsense_Mutation	A	T	p.K200*
LUAD	TCGA-67-3771-01	ABCC4	ENST00000538287.1,ENST00000376887.4,ENST00000412704.1,ENST00000431522.1	chr13	95861687:95861851:95862945:95863035:95886863:95887088,	95862946	95863035	95862948	95862948	Nonsense_Mutation	G	A	p.Q207*
LUAD	TCGA-67-3771-01	TTC21A	ENST00000440121.1,ENST00000430597.2	chr3	39159559:39159644:39161412:39161511:39162487:39162680,	39161413	39161511	39161449	39161449	Nonsense_Mutation	G	T	p.E288*
LUAD	TCGA-67-3771-01	POLR2D	ENST00000409955.1	chr2	128608163:128608259:128610498:128610679:128615339:128615523,128605414:128605759:128610498:128610679:128615601:128615691,	128610499	128610679	128610524	128610524	Nonsense_Mutation	T	A	p.R77*
LUAD	TCGA-67-3771-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265292	75265292	Nonsense_Mutation	C	T	p.Q1098*
LUAD	TCGA-67-3771-01	NUCKS1	ENST00000367142.4	chr1	205693053:205693109:205696827:205696933:205698699:205698749,	205696828	205696933	205696877	205696877	Nonsense_Mutation	G	A	p.R42*
LUAD	TCGA-67-3771-01	ARHGAP12	ENST00000396144.4,ENST00000497103.1,ENST00000375245.4,ENST00000344936.2,ENST00000492028.1,ENST00000375250.5,ENST00000311380.4	chr10	32101634:32101751:32103186:32103289:32106715:32106814,	32103187	32103289	32103262	32103262	Nonsense_Mutation	C	A	p.E557*
LUAD	TCGA-67-3771-01	C6	ENST00000337836.5,ENST00000263413.3	chr5	41195893:41196035:41199869:41200014:41201659:41201816,	41199870	41200014	41199909	41199909	Nonsense_Mutation	C	A	p.E136*
LUAD	TCGA-67-3771-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156847	145156847	Nonsense_Mutation	A	T	p.L636*
LUAD	TCGA-67-3771-01	C8orf31	ENST00000524181.1	chr8	144120711:144120986:144124374:144124504:144124594:144124679,	144124375	144124504	144124453	144124453	Nonsense_Mutation	C	A	p.S12*
LUAD	TCGA-67-3771-01	CDYL	ENST00000397588.3	chr6	4776675:4777041:4891946:4892613:4935748:4936005,	4891947	4892613	4892412	4892412	Nonsense_Mutation	G	T	p.E218*
LUAD	TCGA-67-3771-01	SYK	ENST00000375754.4,ENST00000375751.4,ENST00000375746.1,ENST00000375747.1	chr9	93641045:93641235:93650030:93650171:93650796:93650909,	93650031	93650171	93650153	93650153	Nonsense_Mutation	T	G	p.Y568*
LUAD	TCGA-67-3771-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289811	68289811	Nonsense_Mutation	G	A	p.W215*
LUAD	TCGA-67-3771-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289811	68289811	Nonsense_Mutation	G	A	p.W215*
LUAD	TCGA-67-3771-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289811	68289811	Nonsense_Mutation	G	A	p.W215*
LUAD	TCGA-67-3773-01	GSDMB	ENST00000468820.1,ENST00000524039.1	chr17	38063213:38063240:38066008:38066177:38068578:38068596,38065210:38065295:38066008:38066177:38068578:38068596,38062447:38062524:38066008:38066177:38068578:38068596,	38066009	38066177	38066035	38066035	Nonsense_Mutation	G	A	p.Q184*
LUAD	TCGA-67-3773-01	IQGAP2	ENST00000274364.6,ENST00000514350.1,ENST00000514001.1,ENST00000505766.1	chr5	75932858:75933001:75936757:75936928:75948574:75948658,	75936758	75936928	75936794	75936794	Nonsense_Mutation	G	T	p.E654*
LUAD	TCGA-67-4679-01	CNDP2	ENST00000579847.1,ENST00000324262.4,ENST00000583695.1,ENST00000324301.8	chr18	72180811:72180954:72183462:72183627:72185733:72185793,	72183463	72183627	72183517	72183517	Nonsense_Mutation	G	T	p.E320*
LUAD	TCGA-67-4679-01	ARHGEF4	ENST00000525839.1,ENST00000409303.1,ENST00000326016.5,ENST00000392953.3	chr2	131704081:131704208:131785517:131785657:131796425:131796605,	131785518	131785657	131785625	131785625	Nonsense_Mutation	G	T	p.G179*
LUAD	TCGA-67-4679-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113351658	113351658	Nonsense_Mutation	G	T	p.E319*
LUAD	TCGA-67-4679-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103076	168103076	Nonsense_Mutation	C	A	p.S1725*
LUAD	TCGA-67-4679-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169492434:169492590:169493038:169493142:169494074:169494146,	169493039	169493142	169493096	169493096	Nonsense_Mutation	A	T	p.Y1950*
LUAD	TCGA-67-4679-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548104	165548104	Nonsense_Mutation	C	A	p.G240*
LUAD	TCGA-67-6215-01	ABCC6	ENST00000205557.7	chr16	16255294:16255421:16256849:16257049:16259479:16259635,	16256850	16257049	16256971	16256971	Nonsense_Mutation	C	A	p.E1129*
LUAD	TCGA-67-6216-01	QRICH1	ENST00000357496.2,ENST00000424300.1,ENST00000395443.2	chr3	49084501:49084679:49094294:49095323:49114141:49114471,	49094295	49095323	49095083	49095083	Nonsense_Mutation	C	A	p.E184*
LUAD	TCGA-67-6216-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103747	47103747	Nonsense_Mutation	T	A	p.K2067*
LUAD	TCGA-67-6217-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631634	116631634	Nonsense_Mutation	C	A	p.E231*
LUAD	TCGA-69-7760-01	TRAF5	ENST00000427925.2,ENST00000488428.1,ENST00000261464.5	chr1	211500178:211500231:211526580:211526799:211527751:211527809,	211526581	211526799	211526711	211526711	Nonsense_Mutation	A	T	p.K44*
LUAD	TCGA-69-7760-01	TRIOBP	ENST00000418339.1,ENST00000403663.2,ENST00000344404.6,ENST00000406386.3,ENST00000417857.1,ENST00000407319.2,ENST00000452519.1,ENST00000413051.2	chr22	38147778:38147835:38150883:38150991:38151107:38151197,	38150884	38150991	38150920	38150920	Nonsense_Mutation	C	T	p.Q1806*
LUAD	TCGA-69-7760-01	ADCY2	ENST00000537121.1,ENST00000338316.4	chr5	7743780:7743865:7757561:7757699:7766799:7766919,	7757562	7757699	7757636	7757636	Nonsense_Mutation	G	A	p.W677*
LUAD	TCGA-69-7763-01	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040348	103040348	Nonsense_Mutation	G	T	p.E50*
LUAD	TCGA-69-7764-01	NRL	ENST00000561028.1	chr14	24550216:24550777:24551676:24552084:24583930:24584219,	24551677	24552084	24551823	24551823	Nonsense_Mutation	G	A	p.Q79*
LUAD	TCGA-69-7764-01	ANKRD27	ENST00000588700.1	chr19	33134477:33134537:33135230:33135385:33140587:33140698,	33135231	33135385	33135266	33135266	Nonsense_Mutation	G	A	p.R164*
LUAD	TCGA-69-7765-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19146106:19146167:19147940:19148055:19153274:19155391,	19147941	19148055	19147950	19147950	Nonsense_Mutation	T	A	p.K546*
LUAD	TCGA-69-7765-01	ACCS	ENST00000263776.8,ENST00000527346.1	chr11	44104718:44104861:44104973:44105127:44105244:44105338,	44104974	44105127	44105101	44105101	Nonsense_Mutation	C	G	p.S461*
LUAD	TCGA-69-7765-01	RFC4	ENST00000296273.2,ENST00000447345.1,ENST00000494047.1,ENST00000433496.1,ENST00000392481.2,ENST00000418288.1	chr3	186510643:186510736:186512446:186512566:186515323:186515403,	186512447	186512566	186512499	186512499	Nonsense_Mutation	G	A	p.R120*
LUAD	TCGA-69-7765-01	RFC4	ENST00000449502.1	chr3	186510643:186510736:186512446:186512570:186515323:186515403,	186512447	186512570	186512499	186512499	Nonsense_Mutation	G	A	p.R120*
LUAD	TCGA-69-7765-01	EGFR	ENST00000454757.2,ENST00000275493.2,ENST00000455089.1,ENST00000442591.1,ENST00000344576.2,ENST00000342916.3	chr7	55225355:55225446:55227831:55228031:55229191:55229324,	55227832	55228031	55227989	55227989	Nonsense_Mutation	C	T	p.Q486*
LUAD	TCGA-69-7765-01	JAG1	ENST00000254958.5	chr20	10639115:10639370:10644610:10644662:10653348:10653654,	10644611	10644662	10644641	10644641	Nonsense_Mutation	C	A	p.E137*
LUAD	TCGA-69-7765-01	ACOT12	ENST00000307624.3	chr5	80628295:80628424:80631586:80631720:80638490:80638574,	80631587	80631720	80631601	80631601	Nonsense_Mutation	C	T	p.W416*
LUAD	TCGA-69-7765-01	NF1	ENST00000358273.4,ENST00000479536.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29661855:29662049:29663350:29663491:29663652:29663891,	29663351	29663491	29663414	29663414	Nonsense_Mutation	G	T	p.G2024*
LUAD	TCGA-69-7765-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19339151	19339151	Nonsense_Mutation	C	T	p.Q908*
LUAD	TCGA-69-7765-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66096209:66096324:66135960:66136198:66188492:66188576,	66135961	66136198	66136030	66136030	Nonsense_Mutation	C	T	p.Q223*
LUAD	TCGA-69-7765-01	ACSM1	ENST00000219151.4,ENST00000523065.1,ENST00000307493.4,ENST00000520010.1,ENST00000519745.1	chr16	20693726:20693785:20696514:20696725:20702318:20702432,	20696515	20696725	20696590	20696590	Nonsense_Mutation	G	A	p.Q110*
LUAD	TCGA-69-7765-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616900	25616900	Nonsense_Mutation	C	A	p.E141*
LUAD	TCGA-69-7973-01	COL4A5	ENST00000361603.2	chrX	107911548:107911734:107920729:107920863:107923908:107923981,	107920730	107920863	107920744	107920744	Nonsense_Mutation	G	T	p.E1275*
LUAD	TCGA-69-7973-01	PDE10A	ENST00000539869.2	chr6	165895802:165895831:165956927:165957056:166075434:166075557,	165956928	165957056	165957053	165957053	Nonsense_Mutation	A	T	p.L14*
LUAD	TCGA-69-7973-01	INSC	ENST00000379554.3,ENST00000424273.1,ENST00000525218.1,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15198656:15198709:15199869:15199993:15212246:15212360,	15199870	15199993	15199873	15199873	Nonsense_Mutation	C	A	p.C200*
LUAD	TCGA-69-7973-01	DHX34	ENST00000328771.4	chr19	47863224:47863327:47865732:47865950:47870237:47870412,	47865733	47865950	47865873	47865873	Nonsense_Mutation	G	T	p.E506*
LUAD	TCGA-69-7974-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248858	44248858	Nonsense_Mutation	C	A	p.E218*
LUAD	TCGA-69-7974-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36763225:36763322:36766828:36767053:36768447:36768637,	36766829	36767053	36766951	36766951	Nonsense_Mutation	T	A	p.Y743*
LUAD	TCGA-69-7974-01	AOC1	ENST00000416793.2,ENST00000360937.4	chr7	150549606:150549646:150553542:150555128:150555850:150556136,	150553543	150555128	150554515	150554515	Nonsense_Mutation	C	G	p.Y319*
LUAD	TCGA-69-7974-01	EIF2D	ENST00000367114.3,ENST00000468891.1,ENST00000271764.2	chr1	206772356:206772446:206772816:206772966:206773086:206773172,	206772817	206772966	206772944	206772944	Nonsense_Mutation	C	A	p.E359*
LUAD	TCGA-69-7974-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42002888:42003547:42005348:42005694:42019377:42019604,	42005349	42005694	42005391	42005391	Nonsense_Mutation	C	T	p.R1043*
LUAD	TCGA-69-7978-01	PUM1	ENST00000424085.2	chr1	31479840:31479949:31501642:31501711:31532050:31532424,31454184:31454252:31501642:31501711:31532050:31532424,	31501643	31501711	31501678	31501678	Nonsense_Mutation	G	A	p.Q133*
LUAD	TCGA-69-7978-01	CPN1	ENST00000441382.1,ENST00000370418.3	chr10	101814103:101814203:101816769:101816909:101823370:101823482,	101816770	101816909	101816844	101816844	Nonsense_Mutation	T	A	p.K313*
LUAD	TCGA-69-7978-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53225097:53225236:53225867:53226226:53226952:53227058,	53225868	53226226	53225896	53225896	Nonsense_Mutation	C	A	p.E918*
LUAD	TCGA-69-7978-01	PSD4	ENST00000409656.1,ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113943537:113943832:113949956:113950166:113950624:113950705,	113949957	113950166	113950027	113950027	Nonsense_Mutation	G	T	p.E567*
LUAD	TCGA-69-7978-01	MYOM1	ENST00000581075.1,ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3086035:3086149:3089171:3089239:3089534:3089594,	3089172	3089239	3089174	3089174	Nonsense_Mutation	T	A	p.K1379*
LUAD	TCGA-69-7978-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108114679:108114845:108115514:108115753:108117690:108117854,	108115515	108115753	108115594	108115594	Nonsense_Mutation	C	T	p.R248*
LUAD	TCGA-69-7978-01	LSM2	ENST00000470086.1	chr6	31765172:31765659:31773851:31773919:31774531:31774594,31766262:31766284:31773851:31773919:31774531:31774594,31765766:31765826:31773851:31773919:31774531:31774594,	31773852	31773919	31773871	31773871	Nonsense_Mutation	C	A	p.E18*
LUAD	TCGA-69-7978-01	HSPA8	ENST00000534567.1,ENST00000525624.1,ENST00000527983.1,ENST00000532780.1,ENST00000534624.1,ENST00000532182.1,ENST00000227378.3,ENST00000528292.1,ENST00000527387.1,ENST00000532636.1,ENST00000453788.2	chr11	122930872:122930976:122931300:122931506:122931827:122931966,	122931301	122931506	122931360	122931360	Nonsense_Mutation	C	A	p.E118*
LUAD	TCGA-69-7978-01	HSPA8	ENST00000525463.1	chr11	122930937:122930976:122931300:122931383:122931827:122932037,	122931301	122931383	122931360	122931360	Nonsense_Mutation	C	A	p.E118*
LUAD	TCGA-69-7978-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98524789:98524989:98527611:98527829:98528255:98528453,	98527612	98527829	98527770	98527770	Nonsense_Mutation	G	T	p.E1112*
LUAD	TCGA-69-7978-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573976	7573976	Nonsense_Mutation	T	A	p.K351*
LUAD	TCGA-69-7979-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000544292.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34673056:34673182:34688257:34688341:34690753:34690845,	34688258	34688341	34688331	34688331	Nonsense_Mutation	T	A	p.K273*
LUAD	TCGA-69-7979-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819355	214819355	Nonsense_Mutation	G	T	p.E2148*
LUAD	TCGA-69-7979-01	STX1A	ENST00000222812.3	chr7	73114645:73114814:73115059:73115170:73117174:73117312,	73115060	73115170	73115084	73115084	Nonsense_Mutation	G	C	p.S240*
LUAD	TCGA-69-7979-01	STX1A	ENST00000395156.3	chr7	73114645:73114814:73115059:73115124:73117174:73117312,	73115060	73115124	73115084	73115084	Nonsense_Mutation	G	C	p.S240*
LUAD	TCGA-69-7979-01	STX1A	ENST00000480126.1	chr7	73114645:73114814:73115059:73115261:73117174:73117312,	73115060	73115261	73115084	73115084	Nonsense_Mutation	G	C	p.S240*
LUAD	TCGA-69-7979-01	VCP	ENST00000493886.1,ENST00000358901.6	chr9	35059744:35059798:35060309:35060522:35060797:35060920,	35060310	35060522	35060352	35060352	Nonsense_Mutation	C	T	p.W551*
LUAD	TCGA-69-7979-01	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873732	35873732	Nonsense_Mutation	G	T	p.E230*
LUAD	TCGA-69-7979-01	HDAC9	ENST00000456174.2,ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000405010.3,ENST00000523867.1	chr7	18633530:18633652:18668972:18669104:18674249:18674365,	18668973	18669104	18669011	18669011	Nonsense_Mutation	C	T	p.Q232*
LUAD	TCGA-69-7979-01	NPAT	ENST00000610253.1,ENST00000278612.8	chr11	108056129:108056221:108057208:108057296:108058824:108058906,	108057209	108057296	108057289	108057289	Nonsense_Mutation	G	A	p.Q216*
LUAD	TCGA-69-7979-01	SLC9C2	ENST00000367714.3	chr1	173567044:173567171:173569255:173569356:173570788:173570855,	173569256	173569356	173569328	173569328	Nonsense_Mutation	A	T	p.C52*
LUAD	TCGA-69-7979-01	CLTA	ENST00000345519.5,ENST00000396603.2,ENST00000538225.1,ENST00000464497.1,ENST00000470744.1,ENST00000242285.6	chr9	36191161:36191270:36197547:36197585:36204064:36204128,36191161:36191270:36197547:36197585:36198975:36199093,	36197548	36197585	36197559	36197559	Nonsense_Mutation	G	T	p.G77*
LUAD	TCGA-69-7979-01	SYCP2L	ENST00000283141.6,ENST00000341041.4	chr6	10942909:10942979:10955348:10955450:10956368:10956475,	10955349	10955450	10955441	10955441	Nonsense_Mutation	G	T	p.E683*
LUAD	TCGA-69-7979-01	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123274058:123274310:123274968:123275172:123276950:123277145,	123274969	123275172	123275169	123275169	Nonsense_Mutation	G	T	p.E4768*
LUAD	TCGA-69-7979-01	TRIML2	ENST00000326754.3,ENST00000511771.1,ENST00000512729.1,ENST00000536972.1	chr4	189020188:189020329:189022209:189022404:189025990:189026086,	189022210	189022404	189022368	189022368	Nonsense_Mutation	C	A	p.E58*
LUAD	TCGA-69-7979-01	LMO7	ENST00000465261.2,ENST00000357063.3	chr13	76427227:76427524:76430641:76430744:76432056:76434004,	76430642	76430744	76430679	76430679	Nonsense_Mutation	C	T	p.Q1619*
LUAD	TCGA-69-7979-01	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28624231:28624359:28626681:28626811:28631483:28631599,	28626682	28626811	28626686	28626686	Nonsense_Mutation	C	A	p.E204*
LUAD	TCGA-69-7979-01	F13A1	ENST00000264870.3	chr6	6174812:6175100:6182220:6182374:6196029:6196118,	6182221	6182374	6182293	6182293	Nonsense_Mutation	T	A	p.K463*
LUAD	TCGA-69-7979-01	ACAN	ENST00000560601.1	chr15	89402306:89402648:89403556:89403670:89414612:89414721,89402306:89402648:89403556:89403670:89411446:89411560,	89403557	89403670	89403616	89403616	Nonsense_Mutation	G	T	p.G2298*
LUAD	TCGA-69-7979-01	CDK13	ENST00000181839.4,ENST00000340829.5	chr7	40102424:40102526:40102621:40102699:40117603:40117720,	40102622	40102699	40102635	40102635	Nonsense_Mutation	G	T	p.E906*
LUAD	TCGA-69-7979-01	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52384746:52384864:52387531:52387701:52396202:52396274,	52387532	52387701	52387649	52387649	Nonsense_Mutation	C	A	p.E193*
LUAD	TCGA-69-7979-01	ULK3	ENST00000566479.1,ENST00000566631.1,ENST00000568273.1,ENST00000561725.1,ENST00000565881.1,ENST00000440863.2,ENST00000570276.1,ENST00000568667.1,ENST00000568210.1,ENST00000569437.1	chr15	75130780:75130845:75130983:75131086:75131350:75131391,	75130984	75131086	75131080	75131080	Nonsense_Mutation	G	A	p.Q336*
LUAD	TCGA-69-7980-01	CD300LF	ENST00000583937.1,ENST00000326165.6,ENST00000464910.1	chr17	72691863:72691998:72694507:72694620:72699173:72699237,72692333:72692356:72694507:72694620:72699173:72699237,	72694508	72694620	72694570	72694570	Nonsense_Mutation	A	T	p.L166*
LUAD	TCGA-69-7980-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124490	76124490	Nonsense_Mutation	G	A	p.R67*
LUAD	TCGA-69-7980-01	COX4I1	ENST00000564544.1	chr16	85834810:85834884:85838542:85838759:85839338:85839470,	85838543	85838759	85838698	85838698	Nonsense_Mutation	G	T	p.E77*
LUAD	TCGA-69-7980-01	COX4I1	ENST00000561569.1,ENST00000253452.2,ENST00000564903.1,ENST00000562336.1,ENST00000568794.1	chr16	85834810:85834884:85838542:85838710:85839338:85839470,	85838543	85838710	85838698	85838698	Nonsense_Mutation	G	T	p.E77*
LUAD	TCGA-69-7980-01	COX4I1	ENST00000566405.1	chr16	85834810:85834884:85838546:85838710:85839338:85839470,	85838547	85838710	85838698	85838698	Nonsense_Mutation	G	T	p.E77*
LUAD	TCGA-69-7980-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826417	129826417	Nonsense_Mutation	A	T	p.K2874*
LUAD	TCGA-69-7980-01	PAN2	ENST00000440411.3,ENST00000551359.1,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1,ENST00000547226.1	chr12	56711384:56711427:56712020:56712218:56713091:56713271,56711384:56711427:56712020:56712218:56712871:56712965,	56712021	56712218	56712162	56712162	Nonsense_Mutation	G	A	p.Q1145*
LUAD	TCGA-69-7980-01	CD6	ENST00000346437.4,ENST00000344931.5,ENST00000352009.5,ENST00000452451.2,ENST00000313421.7,ENST00000344028.5	chr11	60776005:60776317:60777043:60777346:60778541:60778607,	60777044	60777346	60777208	60777208	Nonsense_Mutation	A	T	p.K316*
LUAD	TCGA-69-7980-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236708	33236708	Nonsense_Mutation	C	G	p.S643*
LUAD	TCGA-69-7980-01	WNK1	ENST00000537687.1	chr12	971400:971436:977031:978270:980430:980514,	977032	978270	977998	977998	Nonsense_Mutation	G	T	p.E1036*
LUAD	TCGA-69-7980-01	POMGNT1	ENST00000371992.1,ENST00000371986.3	chr1	46654390:46654652:46654913:46655029:46655129:46655239,46654390:46654652:46654913:46655029:46655155:46655239,	46654914	46655029	46655023	46655023	Nonsense_Mutation	C	A	p.E626*
LUAD	TCGA-69-8253-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610589	10610589	Nonsense_Mutation	C	A	p.E41*
LUAD	TCGA-69-8253-01	NPEPPS	ENST00000544660.1,ENST00000322157.4,ENST00000530514.1,ENST00000530173.1	chr17	45669850:45669911:45673718:45673828:45677041:45677105,	45673719	45673828	45673790	45673790	Nonsense_Mutation	C	T	p.Q500*
LUAD	TCGA-69-8255-01	QSER1	ENST00000527788.1,ENST00000399302.2,ENST00000524678.1	chr11	32977533:32977667:32979414:32979632:32987845:32987983,	32979415	32979632	32979468	32979468	Nonsense_Mutation	C	G	p.S1473*
LUAD	TCGA-69-8255-01	CD1B	ENST00000368168.3	chr1	158299324:158299438:158299641:158299920:158300585:158300815,	158299642	158299920	158299876	158299876	Nonsense_Mutation	C	A	p.G125*
LUAD	TCGA-69-8255-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57955661:57955695:57958254:57958471:57962021:57962117,57955661:57955695:57958254:57958471:57963443:57963591,	57958255	57958471	57958311	57958311	Nonsense_Mutation	G	A	p.Q161*
LUAD	TCGA-69-A59K-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962689	21962689	Nonsense_Mutation	G	T	p.E488*
LUAD	TCGA-69-A59K-01	MLLT10	ENST00000438473.1	chr10	21959377:21959633:21962569:21962848:21970260:21970305,	21962570	21962848	21962689	21962689	Nonsense_Mutation	G	T	p.E488*
LUAD	TCGA-69-A59K-01	NAALADL2	ENST00000473253.1,ENST00000454872.1	chr3	175041963:175042114:175165016:175165160:175181188:175181281,	175165017	175165160	175165127	175165127	Nonsense_Mutation	G	T	p.E401*
LUAD	TCGA-69-A59K-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16611991	16611991	Nonsense_Mutation	A	T	p.R130*
LUAD	TCGA-69-A59K-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230723835	230723835	Nonsense_Mutation	G	C	p.S185*
LUAD	TCGA-69-A59K-01	ASTN2	ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119976636:119977021:120053604:120053792:120176774:120177216,	120053605	120053792	120053651	120053651	Nonsense_Mutation	G	T	p.S195*
LUAD	TCGA-69-A59K-01	CD96	ENST00000283285.5,ENST00000352690.4,ENST00000494798.1	chr3	111319572:111319761:111325546:111325639:111342600:111342669,	111325547	111325639	111325562	111325562	Nonsense_Mutation	C	A	p.S368*
LUAD	TCGA-69-A59K-01	TPP2	ENST00000376052.3	chr13	103301757:103301836:103309405:103309557:103315997:103316094,103303708:103303747:103309405:103309557:103315997:103316094,	103309406	103309557	103309520	103309520	Nonsense_Mutation	G	T	p.E1036*
LUAD	TCGA-71-6725-01	AGBL5	ENST00000487078.1,ENST00000323064.8,ENST00000360131.4	chr2	27280170:27280306:27281267:27281470:27282057:27282272,	27281268	27281470	27281274	27281274	Nonsense_Mutation	C	T	p.R560*
LUAD	TCGA-71-8520-01	MS4A4A	ENST00000337908.4	chr11	60050085:60050212:60059697:60059857:60064669:60064798,60048157:60048189:60059697:60059857:60064669:60064798,	60059698	60059857	60059735	60059735	Nonsense_Mutation	G	T	p.E8*
LUAD	TCGA-71-8520-01	RECQL	ENST00000421138.2,ENST00000542432.1,ENST00000396093.3,ENST00000314748.6,ENST00000536964.1,ENST00000539672.1,ENST00000444129.2,ENST00000536240.1	chr12	21643308:21643312:21644452:21644650:21652488:21652549,	21644453	21644650	21644597	21644597	Nonsense_Mutation	G	A	p.Q24*
LUAD	TCGA-73-4659-01	TBX5	ENST00000310346.4	chr12	114839630:114839725:114841556:114841741:114845618:114846192,	114841557	114841741	114841688	114841688	Nonsense_Mutation	C	A	p.E6*
LUAD	TCGA-73-4659-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903619	5903619	Nonsense_Mutation	C	T	p.R277*
LUAD	TCGA-73-4659-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2,ENST00000536483.1	chr8	48689404:48689544:48690246:48690435:48691019:48691098,	48690247	48690435	48690420	48690420	Nonsense_Mutation	C	A	p.E3956*
LUAD	TCGA-73-4659-01	GPN2	ENST00000374135.4,ENST00000431781.2	chr1	27210723:27210781:27212463:27212624:27215459:27215616,	27212464	27212624	27212601	27212601	Nonsense_Mutation	C	A	p.E198*
LUAD	TCGA-73-4666-01	FANCG	ENST00000425676.1,ENST00000378643.3	chr9	35074367:35074491:35074923:35075079:35075275:35075322,	35074924	35075079	35075050	35075050	Nonsense_Mutation	T	A	p.K504*
LUAD	TCGA-73-4666-01	DOCK9	ENST00000448493.2,ENST00000339416.2,ENST00000340449.3,ENST00000400228.2,ENST00000376460.1	chr13	99479083:99479141:99481560:99481776:99481896:99482010,	99481561	99481776	99481647	99481647	Nonsense_Mutation	T	A	p.K1604*
LUAD	TCGA-73-4666-01	NAE1	ENST00000563253.1,ENST00000290810.3,ENST00000394074.2,ENST00000379463.2,ENST00000359087.4	chr16	66850549:66850575:66850867:66850931:66851327:66851390,	66850868	66850931	66850922	66850922	Nonsense_Mutation	G	A	p.R226*
LUAD	TCGA-73-4666-01	AKAP6	ENST00000280979.4,ENST00000557354.1,ENST00000557272.1	chr14	33014435:33016205:33046325:33046448:33068615:33068712,	33046326	33046448	33046386	33046386	Nonsense_Mutation	G	T	p.E803*
LUAD	TCGA-73-4668-01	NLRP12	ENST00000535162.1,ENST00000345770.5,ENST00000324134.6,ENST00000391773.1	chr19	54299112:54299283:54304480:54304651:54307205:54307376,54301496:54301667:54304480:54304651:54307205:54307376,	54304481	54304651	54304614	54304614	Nonsense_Mutation	C	A	p.E875*
LUAD	TCGA-73-4668-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000263960.2	chr2	198318216:198318388:198327262:198327455:198334793:198334895,198324655:198324805:198327262:198327455:198334793:198334895,	198327263	198327455	198327273	198327273	Nonsense_Mutation	C	T	p.Q89*
LUAD	TCGA-73-4668-01	C1QA	ENST00000438241.1	chr1	22963254:22963353:22964102:22964272:22965325:22965654,	22964103	22964272	22964187	22964187	Nonsense_Mutation	C	A	p.C26*
LUAD	TCGA-73-4668-01	CPVL	ENST00000432534.1	chr7	29070210:29070375:29103676:29103850:29105638:29105737,29070210:29070375:29103676:29103850:29111388:29111461,	29103677	29103850	29103813	29103813	Nonsense_Mutation	G	C	p.S334*
LUAD	TCGA-73-4668-01	GINS1	ENST00000262460.4	chr20	25400319:25400441:25405846:25405963:25422337:25422412,25398740:25398831:25405846:25405963:25422337:25422412,	25405847	25405963	25405910	25405910	Nonsense_Mutation	G	T	p.E132*
LUAD	TCGA-73-4668-01	DSC1	ENST00000257198.5,ENST00000257197.3	chr18	28712530:28712652:28713853:28714093:28714534:28714747,	28713854	28714093	28713983	28713983	Nonsense_Mutation	T	A	p.R663*
LUAD	TCGA-73-4668-01	ADAMTS20	ENST00000389420.3,ENST00000553158.1	chr12	43822437:43822602:43823419:43823527:43824154:43824274,	43823420	43823527	43823488	43823488	Nonsense_Mutation	C	A	p.E1141*
LUAD	TCGA-73-4668-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698503	30698503	Nonsense_Mutation	G	T	p.E120*
LUAD	TCGA-73-4670-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2,ENST00000487682.1	chr1	156911163:156911225:156911655:156911781:156912481:156912572,	156911656	156911781	156911687	156911687	Nonsense_Mutation	C	A	p.E1141*
LUAD	TCGA-73-4670-01	PRRX1	ENST00000367760.3,ENST00000495280.1	chr1	170695360:170695542:170699417:170699489:170705188:170705374,	170699418	170699489	170699423	170699423	Nonsense_Mutation	C	A	p.S202*
LUAD	TCGA-73-4670-01	CHD6	ENST00000373233.3	chr20	40112991:40113247:40116304:40116448:40117067:40117244,	40116305	40116448	40116400	40116400	Nonsense_Mutation	C	A	p.E636*
LUAD	TCGA-73-4670-01	ATP6V0D2	ENST00000285393.3	chr8	87111132:87111337:87125937:87126109:87151685:87151864,	87125938	87126109	87126054	87126054	Nonsense_Mutation	G	T	p.E83*
LUAD	TCGA-73-4670-01	BAP1	ENST00000470173.1,ENST00000296288.5,ENST00000460680.1,ENST00000483984.1	chr3	52441973:52442093:52442489:52442622:52443569:52443624,	52442490	52442622	52442492	52442492	Nonsense_Mutation	G	A	p.Q85*
LUAD	TCGA-73-4675-01	PPP2R2C	ENST00000335585.5,ENST00000507294.1,ENST00000515571.1,ENST00000513943.1,ENST00000506140.1,ENST00000382599.4	chr4	6377545:6377658:6380133:6380299:6382723:6382821,	6380134	6380299	6380272	6380272	Nonsense_Mutation	C	A	p.E66*
LUAD	TCGA-73-4677-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836722	82836722	Nonsense_Mutation	G	T	p.E2634*
LUAD	TCGA-73-4677-01	LCP2	ENST00000046794.5,ENST00000519594.1	chr5	169697722:169697921:169701304:169701342:169702323:169702355,	169701305	169701342	169701312	169701312	Nonsense_Mutation	G	T	p.S106*
LUAD	TCGA-73-7498-01	KCNT2	ENST00000609185.1,ENST00000367431.4	chr1	196311208:196311358:196342269:196342378:196367692:196367801,196309618:196309700:196342269:196342378:196367692:196367801,	196342270	196342378	196342361	196342361	Nonsense_Mutation	C	A	p.E438*
LUAD	TCGA-73-7499-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LUAD	TCGA-73-7499-01	IL31RA	ENST00000354961.4,ENST00000396836.2,ENST00000447346.2,ENST00000396834.1,ENST00000359040.5	chr5	55155336:55155427:55164618:55164736:55168097:55168279,	55164619	55164736	55164714	55164714	Nonsense_Mutation	C	T	p.Q65*
LUAD	TCGA-75-5125-01	ZC2HC1C	ENST00000439583.2	chr14	75536376:75536452:75537257:75538099:75544234:75544522,	75537258	75538099	75537608	75537608	Nonsense_Mutation	C	G	p.S111*
LUAD	TCGA-75-5125-01	ZC2HC1C	ENST00000238686.8	chr14	75536376:75536452:75537257:75538441:75544234:75544522,	75537258	75538441	75537608	75537608	Nonsense_Mutation	C	G	p.S111*
LUAD	TCGA-75-5125-01	ZC2HC1C	ENST00000524913.1	chr14	75536376:75536452:75537257:75538614:75544234:75544522,	75537258	75538614	75537608	75537608	Nonsense_Mutation	C	G	p.S111*
LUAD	TCGA-75-5125-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17378833	17378833	Nonsense_Mutation	C	T	p.Q462*
LUAD	TCGA-75-5126-01	VGLL3	ENST00000398399.2	chr3	86987118:86996217:87017739:87018273:87027675:87027793,	87017740	87018273	87018166	87018166	Nonsense_Mutation	G	A	p.Q171*
LUAD	TCGA-75-5126-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77471964	77471964	Nonsense_Mutation	G	A	p.Q769*
LUAD	TCGA-75-5126-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247498	149247498	Nonsense_Mutation	G	T	p.E1200*
LUAD	TCGA-75-5126-01	PTPRC	ENST00000352140.3,ENST00000529828.1	chr1	198661475:198661502:198668692:198668833:198672426:198672475,198661475:198661502:198668692:198668833:198671515:198671659,198666009:198666038:198668692:198668833:198672426:198672475,	198668693	198668833	198668740	198668740	Nonsense_Mutation	C	T	p.Q114*
LUAD	TCGA-75-5126-01	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016162	167016162	Nonsense_Mutation	C	A	p.E604*
LUAD	TCGA-75-5126-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661452	230661452	Nonsense_Mutation	G	C	p.S1149*
LUAD	TCGA-75-5126-01	XPNPEP3	ENST00000357137.4,ENST00000544094.1,ENST00000428799.1	chr22	41277773:41278181:41282316:41282519:41303590:41303653,	41282317	41282519	41282319	41282319	Nonsense_Mutation	G	T	p.E198*
LUAD	TCGA-75-5126-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472167	77472167	Nonsense_Mutation	G	C	p.S701*
LUAD	TCGA-75-5126-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308507	33308507	Nonsense_Mutation	C	T	p.Q183*
LUAD	TCGA-75-5126-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168108197	168108197	Nonsense_Mutation	C	A	p.S3432*
LUAD	TCGA-75-5126-01	TMEM63B	ENST00000532634.1,ENST00000371893.2,ENST00000525873.1,ENST00000323267.6,ENST00000525294.1,ENST00000534326.1,ENST00000259746.9	chr6	44106216:44106254:44107203:44107346:44107444:44107496,	44107204	44107346	44107259	44107259	Nonsense_Mutation	C	T	p.Q155*
LUAD	TCGA-75-5126-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913972	129913972	Nonsense_Mutation	C	A	p.E234*
LUAD	TCGA-75-5126-01	NRF1	ENST00000223190.4,ENST00000393231.3,ENST00000393230.2,ENST00000539636.1,ENST00000311967.2,ENST00000393232.1	chr7	129348914:129349073:129350213:129350411:129351314:129351416,	129350214	129350411	129350356	129350356	Nonsense_Mutation	C	A	p.S303*
LUAD	TCGA-75-5146-01	THBS2	ENST00000366787.3	chr6	169646291:169646376:169648511:169649068:169650827:169650901,	169648512	169649068	169648565	169648565	Nonsense_Mutation	C	A	p.E186*
LUAD	TCGA-75-5146-01	TBC1D14	ENST00000409757.4,ENST00000410031.1,ENST00000448507.1,ENST00000446947.2,ENST00000451522.2,ENST00000439515.2	chr4	7002871:7002978:7006570:7006651:7008358:7008453,	7006571	7006651	7006648	7006648	Nonsense_Mutation	G	T	p.E450*
LUAD	TCGA-75-5146-01	LRRC23	ENST00000451681.1,ENST00000428946.1,ENST00000486401.1	chr12	6992867:6993083:7014748:7014923:7015572:7015619,7014037:7014067:7014748:7014923:7015572:7015619,	7014749	7014923	7014864	7014864	Nonsense_Mutation	G	T	p.E23*
LUAD	TCGA-75-5146-01	DBT	ENST00000370132.4	chr1	100671785:100671857:100672000:100672192:100676249:100676327,	100672001	100672192	100672123	100672123	Nonsense_Mutation	G	A	p.Q363*
LUAD	TCGA-75-6205-01	TEX26	ENST00000531960.1,ENST00000380473.3	chr13	31531094:31531166:31540358:31540535:31543021:31543183,	31540359	31540535	31540436	31540436	Nonsense_Mutation	C	T	p.R183*
LUAD	TCGA-75-6205-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411551:116411708:116411902:116412043:116414934:116415126,	116411903	116412043	116412024	116412024	Nonsense_Mutation	C	G	p.Y1003*
LUAD	TCGA-75-6206-01	UGT3A1	ENST00000507113.1,ENST00000503189.1,ENST00000274278.3	chr5	35957289:35957521:35965487:35966019:35968120:35968235,	35965488	35966019	35965591	35965591	Nonsense_Mutation	C	T	p.W247*
LUAD	TCGA-75-6207-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
LUAD	TCGA-75-6211-01	TDRD1	ENST00000369280.1,ENST00000369282.1,ENST00000251864.2	chr10	115970618:115970726:115971624:115971795:115973104:115973347,	115971625	115971795	115971637	115971637	Nonsense_Mutation	G	A	p.W558*
LUAD	TCGA-75-6211-01	CAP2	ENST00000489374.1	chr6	17514079:17514185:17539499:17539689:17541203:17541379,17507399:17507543:17539499:17539689:17541203:17541379,17463226:17463304:17539499:17539689:17541203:17541379,	17539500	17539689	17539605	17539605	Nonsense_Mutation	G	T	p.E248*
LUAD	TCGA-75-6211-01	AGPAT4	ENST00000436279.1	chr6	161574377:161574531:161575180:161575342:161587279:161587449,161574377:161574531:161575180:161575342:161653067:161653268,161574377:161574531:161575180:161575342:161586608:161586745,	161575181	161575342	161575192	161575192	Nonsense_Mutation	C	A	p.E167*
LUAD	TCGA-75-6211-01	MTO1	ENST00000415954.2,ENST00000370300.4,ENST00000498286.1,ENST00000370305.1,ENST00000370308.4	chr6	74176215:74176329:74183087:74183377:74189454:74189567,	74183088	74183377	74183111	74183111	Nonsense_Mutation	G	T	p.E187*
LUAD	TCGA-75-6211-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22804890	22804890	Nonsense_Mutation	G	A	p.Q998*
LUAD	TCGA-75-6211-01	RGS1	ENST00000498352.1,ENST00000469578.2	chr1	192544904:192545059:192545414:192545495:192545903:192545954,	192545415	192545495	192545461	192545461	Nonsense_Mutation	G	T	p.E62*
LUAD	TCGA-75-6214-01	MAX	ENST00000358402.4,ENST00000556892.1,ENST00000358664.4	chr14	65543326:65543381:65544630:65544754:65560425:65560533,	65544631	65544754	65544682	65544682	Nonsense_Mutation	G	A	p.Q82*
LUAD	TCGA-75-6214-01	WWC1	ENST00000524228.1	chr5	167887654:167887747:167891733:167891967:167894844:167894893,167887654:167887747:167891733:167891967:167894847:167894969,	167891734	167891967	167891839	167891839	Nonsense_Mutation	G	T	p.E1008*
LUAD	TCGA-75-6214-01	WWC1	ENST00000521089.1	chr5	167887654:167887747:167891715:167891967:167894847:167894969,167887654:167887747:167891715:167891967:167894844:167894893,	167891716	167891967	167891839	167891839	Nonsense_Mutation	G	T	p.E1008*
LUAD	TCGA-75-6214-01	PTPRF	ENST00000422171.2,ENST00000414879.1	chr1	44058127:44058272:44064390:44064584:44069086:44069198,	44064391	44064584	44064417	44064417	Nonsense_Mutation	G	T	p.E716*
LUAD	TCGA-75-6214-01	ZNF791	ENST00000458122.3,ENST00000343325.4,ENST00000598225.1,ENST00000597691.1	chr19	12734513:12734640:12735463:12735524:12738534:12738619,	12735464	12735524	12735466	12735466	Nonsense_Mutation	G	T	p.E45*
LUAD	TCGA-75-6214-01	IL2RA	ENST00000379959.3	chr10	6061832:6061904:6063440:6063656:6066206:6066317,	6063441	6063656	6063568	6063568	Nonsense_Mutation	G	T	p.C152*
LUAD	TCGA-75-6214-01	IL2RA	ENST00000256876.6	chr10	6061832:6061904:6063467:6063656:6066206:6066317,	6063468	6063656	6063568	6063568	Nonsense_Mutation	G	T	p.C152*
LUAD	TCGA-75-6214-01	SERPINB5	ENST00000489441.1,ENST00000382771.4,ENST00000424602.1	chr18	61151654:61151829:61154178:61154316:61156579:61156660,	61154179	61154316	61154262	61154262	Nonsense_Mutation	C	A	p.Y84*
LUAD	TCGA-75-6214-01	ITGA8	ENST00000378076.3	chr10	15614209:15614368:15617487:15617593:15628582:15628663,	15617488	15617593	15617523	15617523	Nonsense_Mutation	C	A	p.E815*
LUAD	TCGA-75-6214-01	CLCNKB	ENST00000375679.4	chr1	16374837:16374915:16374998:16375077:16375614:16375740,	16374999	16375077	16375011	16375011	Nonsense_Mutation	C	T	p.Q197*
LUAD	TCGA-75-7027-01	RHOA	ENST00000454011.2	chr3	49405860:49405981:49412866:49413024:49449252:49449361,49399949:49400059:49412866:49413024:49449252:49449361,	49412867	49413024	49412905	49412905	Nonsense_Mutation	C	A	p.E40*
LUAD	TCGA-75-7027-01	LZTS1	ENST00000381569.1,ENST00000522290.1,ENST00000265801.6	chr8	20107622:20107874:20110292:20111096:20112347:20112692,	20110293	20111096	20110358	20110358	Nonsense_Mutation	T	A	p.K362*
LUAD	TCGA-78-7145-01	TMTC3	ENST00000551088.1	chr12	88542064:88542281:88548064:88548164:88553890:88554006,	88548065	88548164	88548080	88548080	Nonsense_Mutation	G	T	p.G142*
LUAD	TCGA-78-7145-01	GALNTL6	ENST00000506823.1,ENST00000508122.1	chr4	173930328:173930445:173942626:173942776:173961083:173961251,	173942627	173942776	173942643	173942643	Nonsense_Mutation	G	A	p.W502*
LUAD	TCGA-78-7146-01	VPS72	ENST00000368892.4,ENST00000491094.2,ENST00000496809.1,ENST00000354473.4	chr1	151156792:151156969:151157981:151158096:151158273:151158426,	151157982	151158096	151158033	151158033	Nonsense_Mutation	G	A	p.R112*
LUAD	TCGA-78-7146-01	NSG1	ENST00000506380.1,ENST00000433139.2,ENST00000513555.1,ENST00000513829.1,ENST00000397958.1,ENST00000505246.1,ENST00000421177.2	chr4	4393201:4393318:4411299:4411410:4418961:4419170,	4411300	4411410	4411341	4411341	Nonsense_Mutation	C	A	p.C96*
LUAD	TCGA-78-7146-01	ADAD1	ENST00000388725.2,ENST00000492454.1,ENST00000296513.2,ENST00000388724.2,ENST00000439307.1	chr4	123304953:123305121:123314743:123314812:123317406:123317532,	123314744	123314812	123314764	123314764	Nonsense_Mutation	G	T	p.E184*
LUAD	TCGA-78-7146-01	GSTO2	ENST00000477078.2,ENST00000401888.2	chr10	106037651:106037874:106039127:106039229:106057335:106057442,106037651:106037874:106039127:106039229:106045692:106045748,	106039128	106039229	106039209	106039209	Nonsense_Mutation	G	T	p.E150*
LUAD	TCGA-78-7147-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000426907.1,ENST00000262854.6,ENST00000474288.1	chrX	53570846:53570929:53571520:53571723:53571989:53572122,	53571521	53571723	53571710	53571710	Nonsense_Mutation	C	A	p.E3688*
LUAD	TCGA-78-7147-01	ITIH6	ENST00000218436.6	chrX	54786188:54786360:54800513:54800630:54814912:54815041,	54800514	54800630	54800519	54800519	Nonsense_Mutation	C	A	p.E300*
LUAD	TCGA-78-7147-01	RASAL1	ENST00000548972.1,ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000546727.1,ENST00000551051.1,ENST00000418411.2	chr12	113557166:113557248:113559313:113559443:113565616:113565678,	113559314	113559443	113559399	113559399	Nonsense_Mutation	C	A	p.E115*
LUAD	TCGA-78-7147-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741749	37741749	Nonsense_Mutation	C	T	p.Q695*
LUAD	TCGA-78-7147-01	PLEKHA7	ENST00000355661.3,ENST00000531066.1,ENST00000448080.2	chr11	16847666:16848137:16863093:16863269:16872737:16872834,	16863094	16863269	16863110	16863110	Nonsense_Mutation	G	A	p.R286*
LUAD	TCGA-78-7149-01	SYNPO2	ENST00000434046.2,ENST00000307142.4,ENST00000504178.1,ENST00000429713.2	chr4	119944625:119944736:119947781:119948593:119950999:119953008,	119947782	119948593	119948362	119948362	Nonsense_Mutation	G	T	p.G280*
LUAD	TCGA-78-7149-01	LAMP1	ENST00000397181.3,ENST00000332556.4	chr13	113975718:113975785:113975871:113976042:113976596:113976909,	113975872	113976042	113975949	113975949	Nonsense_Mutation	G	T	p.E341*
LUAD	TCGA-78-7150-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116632237	116632237	Nonsense_Mutation	C	A	p.E30*
LUAD	TCGA-78-7150-01	TM7SF3	ENST00000343028.4,ENST00000545344.1	chr12	27127086:27127160:27128428:27128591:27129192:27129290,	27128429	27128591	27128438	27128438	Nonsense_Mutation	G	A	p.Q481*
LUAD	TCGA-78-7150-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807050	22807050	Nonsense_Mutation	G	A	p.R278*
LUAD	TCGA-78-7150-01	VWA7	ENST00000447450.1,ENST00000375688.4,ENST00000467576.1,ENST00000375686.3	chr6	31737451:31737568:31737777:31737890:31740730:31740784,	31737778	31737890	31737788	31737788	Nonsense_Mutation	G	C	p.S397*
LUAD	TCGA-78-7150-01	WNT10B	ENST00000301061.4	chr12	49359338:49360336:49361728:49362102:49363871:49364134,	49361729	49362102	49361889	49361889	Nonsense_Mutation	G	C	p.S184*
LUAD	TCGA-78-7150-01	RIC3	ENST00000524799.1,ENST00000343202.4	chr11	8148205:8148351:8158924:8159018:8159818:8159894,	8158925	8159018	8158962	8158962	Nonsense_Mutation	C	A	p.E162*
LUAD	TCGA-78-7152-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806582	22806582	Nonsense_Mutation	C	A	p.E434*
LUAD	TCGA-78-7154-01	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78592384:78592456:78593114:78593311:78594252:78594342,	78593115	78593311	78593140	78593140	Nonsense_Mutation	G	T	p.E2182*
LUAD	TCGA-78-7155-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467002:136467106:136467628:136467801:136473119:136473264,	136467629	136467801	136467772	136467772	Nonsense_Mutation	G	T	p.E868*
LUAD	TCGA-78-7155-01	MYT1	ENST00000328439.1,ENST00000360149.4	chr20	62844886:62845000:62848419:62848634:62850263:62850388,	62848420	62848634	62848565	62848565	Nonsense_Mutation	C	T	p.Q593*
LUAD	TCGA-78-7155-01	GIMAP4	ENST00000461940.1	chr7	150264483:150264525:150266975:150267089:150269216:150269569,	150266976	150267089	150266999	150266999	Nonsense_Mutation	C	T	p.Q4*
LUAD	TCGA-78-7155-01	GIMAP4	ENST00000478135.1	chr7	150264483:150264525:150266975:150267097:150269216:150269569,	150266976	150267097	150266999	150266999	Nonsense_Mutation	C	T	p.Q4*
LUAD	TCGA-78-7155-01	METTL25	ENST00000248306.3,ENST00000552741.1,ENST00000548432.1,ENST00000551645.1	chr12	82870422:82870497:82871059:82871131:82872710:82872945,	82871060	82871131	82871108	82871108	Nonsense_Mutation	C	T	p.R566*
LUAD	TCGA-78-7155-01	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000482356.1,ENST00000478741.1	chr3	121810447:121810497:121822358:121822694:121825044:121825165,	121822359	121822694	121822511	121822511	Nonsense_Mutation	G	T	p.E73*
LUAD	TCGA-78-7155-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21781544:21781784:21784055:21784217:21784487:21784537,	21784056	21784217	21784174	21784174	Nonsense_Mutation	T	A	p.L2765*
LUAD	TCGA-78-7155-01	AIFM3	ENST00000434714.1,ENST00000335375.5,ENST00000333607.6,ENST00000440238.2,ENST00000405089.1,ENST00000399163.2,ENST00000399167.2	chr22	21328813:21328910:21328992:21329105:21329980:21330067,	21328993	21329105	21329084	21329084	Nonsense_Mutation	C	A	p.Y233*
LUAD	TCGA-78-7155-01	AIFM3	ENST00000465606.1	chr22	21328813:21328910:21329016:21329105:21329980:21330067,	21329017	21329105	21329084	21329084	Nonsense_Mutation	C	A	p.Y233*
LUAD	TCGA-78-7155-01	TPST2	ENST00000398110.2,ENST00000338754.4	chr22	26932253:26932452:26936754:26937684:26940569:26940641,	26936755	26937684	26936942	26936942	Nonsense_Mutation	C	A	p.E219*
LUAD	TCGA-78-7155-01	RGS7	ENST00000440928.1,ENST00000366562.4,ENST00000407727.1,ENST00000366563.1,ENST00000348120.2,ENST00000366565.1,ENST00000331110.7,ENST00000366564.1,ENST00000446183.2,ENST00000401882.1	chr1	240969439:240969626:240975217:240975343:240976917:240977028,	240975218	240975343	240975230	240975230	Nonsense_Mutation	G	T	p.S357*
LUAD	TCGA-78-7155-01	PLA2G6	ENST00000332509.3	chr22	38522377:38522456:38524275:38524437:38525460:38525513,	38524276	38524437	38524306	38524306	Nonsense_Mutation	G	A	p.Q440*
LUAD	TCGA-78-7155-01	METTL22	ENST00000163678.7	chr16	8719352:8719655:8722586:8722967:8729024:8729139,	8722587	8722967	8722679	8722679	Nonsense_Mutation	G	T	p.E76*
LUAD	TCGA-78-7155-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92471709	92471709	Nonsense_Mutation	G	A	p.R871*
LUAD	TCGA-78-7155-01	LARP4	ENST00000429001.3	chr12	50821547:50821692:50822699:50822873:50824277:50824334,	50822700	50822873	50822840	50822840	Nonsense_Mutation	G	T	p.E97*
LUAD	TCGA-78-7155-01	LARP4	ENST00000552445.1,ENST00000398473.2,ENST00000522085.1,ENST00000517559.1,ENST00000548993.1,ENST00000347328.5,ENST00000550522.1,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50821547:50821692:50822717:50822873:50824277:50824334,	50822718	50822873	50822840	50822840	Nonsense_Mutation	G	T	p.E97*
LUAD	TCGA-78-7155-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157187	145157187	Nonsense_Mutation	T	A	p.K523*
LUAD	TCGA-78-7155-01	HERC2	ENST00000261609.7	chr15	28463634:28463817:28465597:28465790:28467173:28467361,	28465598	28465790	28465739	28465739	Nonsense_Mutation	C	A	p.G1902*
LUAD	TCGA-78-7155-01	TRPC7	ENST00000502753.2	chr5	135610360:135610525:135651284:135651467:135692295:135693073,135601907:135602124:135651284:135651467:135692295:135693073,	135651285	135651467	135651405	135651405	Nonsense_Mutation	G	T	p.C281*
LUAD	TCGA-78-7155-01	CEP170	ENST00000366542.1,ENST00000521911.1	chr1	243336112:243336148:243349080:243349374:243349560:243349582,	243349081	243349374	243349110	243349110	Nonsense_Mutation	C	A	p.E513*
LUAD	TCGA-78-7155-01	CCSER1	ENST00000509176.1,ENST00000333691.8,ENST00000513522.1	chr4	91549175:91549383:91645064:91645142:91736912:91736996,	91645065	91645142	91645125	91645125	Nonsense_Mutation	G	T	p.E665*
LUAD	TCGA-78-7155-01	COL6A3	ENST00000347401.3	chr2	238296224:238296827:238303229:238303847:238305369:238305405,238289779:238290142:238303229:238303847:238305369:238305460,	238303230	238303847	238303671	238303671	Nonsense_Mutation	C	A	p.E90*
LUAD	TCGA-78-7155-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000396104.2	chr16	20486683:20486763:20486971:20487095:20488690:20488771,	20486972	20487095	20486999	20486999	Nonsense_Mutation	C	A	p.C334*
LUAD	TCGA-78-7156-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128649899:128649971:128650307:128650474:128652337:128652424,	128650308	128650474	128650465	128650465	Nonsense_Mutation	G	A	p.R91*
LUAD	TCGA-78-7156-01	KRT13	ENST00000468313.1,ENST00000464634.2	chr17	39659910:39659977:39661307:39661487:39661698:39661849,	39661308	39661487	39661387	39661387	Nonsense_Mutation	C	T	p.W139*
LUAD	TCGA-78-7156-01	GLDC	ENST00000321612.6	chr9	6610191:6610356:6620183:6620319:6644613:6644692,	6620184	6620319	6620264	6620264	Nonsense_Mutation	C	T	p.W130*
LUAD	TCGA-78-7156-01	WDR70	ENST00000511906.1,ENST00000510699.1,ENST00000504564.1,ENST00000265107.4	chr5	37479935:37480089:37516615:37516692:37605165:37605340,	37516616	37516692	37516683	37516683	Nonsense_Mutation	C	G	p.S303*
LUAD	TCGA-78-7156-01	AMT	ENST00000487589.1,ENST00000480957.1,ENST00000273588.3,ENST00000395338.2,ENST00000476226.1,ENST00000427987.1,ENST00000485108.1,ENST00000478594.1	chr3	49457643:49457775:49458924:49459005:49459536:49459690,	49458925	49459005	49458927	49458927	Nonsense_Mutation	G	A	p.Q113*
LUAD	TCGA-78-7158-01	NFYC	ENST00000372654.1,ENST00000440226.3,ENST00000456393.2,ENST00000372652.1,ENST00000372653.1,ENST00000447388.3,ENST00000427410.2,ENST00000372651.1	chr1	41228661:41228718:41232267:41232375:41235027:41235087,	41232268	41232375	41232320	41232320	Nonsense_Mutation	C	G	p.S258*
LUAD	TCGA-78-7159-01	CYP26B1	ENST00000546307.1,ENST00000001146.2,ENST00000412253.1	chr2	72360151:72360436:72361889:72362045:72362272:72362548,	72361890	72362045	72362006	72362006	Nonsense_Mutation	T	A	p.K249*
LUAD	TCGA-78-7159-01	PNLIPRP1	ENST00000525820.1,ENST00000528052.1,ENST00000531825.1,ENST00000534537.1,ENST00000358834.4,ENST00000482833.1,ENST00000526223.1	chr10	118363541:118363650:118364897:118365065:118368564:118368679,	118364898	118365065	118364984	118364984	Nonsense_Mutation	G	A	p.W420*
LUAD	TCGA-78-7160-01	RINT1	ENST00000257700.2,ENST00000497979.1	chr7	105192052:105192154:105195474:105195674:105204179:105204394,	105195475	105195674	105195643	105195643	Nonsense_Mutation	C	G	p.S547*
LUAD	TCGA-78-7161-01	SERGEF	ENST00000525422.1	chr11	17899754:17899791:17981016:17981183:18010143:18010222,17940241:17940326:17981016:17981183:18010143:18010222,	17981017	17981183	17981157	17981157	Nonsense_Mutation	G	A	p.R291*
LUAD	TCGA-78-7162-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101821754:101821937:101833092:101833151:101837121:101837170,	101833093	101833151	101833099	101833099	Nonsense_Mutation	G	T	p.E353*
LUAD	TCGA-78-7166-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47888276	47888276	Nonsense_Mutation	C	A	p.G25*
LUAD	TCGA-78-7166-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699100	30699100	Nonsense_Mutation	G	T	p.G319*
LUAD	TCGA-78-7167-01	DCUN1D2	ENST00000478244.1,ENST00000375399.2	chr13	114134962:114135058:114138154:114138371:114144981:114145006,	114138155	114138371	114138335	114138335	Nonsense_Mutation	G	A	p.Q14*
LUAD	TCGA-78-7167-01	MARK2	ENST00000361128.5,ENST00000413835.2,ENST00000377810.3,ENST00000408948.3,ENST00000513765.2,ENST00000350490.7,ENST00000502399.3,ENST00000377809.4,ENST00000425897.2,ENST00000508192.1,ENST00000509502.2,ENST00000402010.2,ENST00000315032.8	chr11	63668251:63668351:63668428:63668541:63669669:63669802,	63668429	63668541	63668529	63668529	Nonsense_Mutation	C	G	p.Y363*
LUAD	TCGA-78-7167-01	FGF12	ENST00000264730.3,ENST00000430714.1,ENST00000454309.2,ENST00000450716.1,ENST00000445105.2,ENST00000448795.1	chr3	191861848:191861916:191888246:191888445:192053149:192053253,	191888247	191888445	191888341	191888341	Nonsense_Mutation	C	T	p.W173*
LUAD	TCGA-78-7220-01	UBXN4	ENST00000272638.9	chr2	136513197:136513261:136519387:136519481:136527338:136527393,	136519388	136519481	136519471	136519471	Nonsense_Mutation	C	T	p.R198*
LUAD	TCGA-78-7220-01	ARHGAP15	ENST00000548242.1,ENST00000295095.6	chr2	144194481:144194611:144244941:144245064:144276834:144276933,	144244942	144245064	144245002	144245002	Nonsense_Mutation	T	G	p.L255*
LUAD	TCGA-78-7220-01	CDC42BPG	ENST00000342711.5	chr11	64597665:64597728:64598976:64599193:64599899:64599954,	64598977	64599193	64599136	64599136	Nonsense_Mutation	C	A	p.E1049*
LUAD	TCGA-78-7220-01	ZNF536	ENST00000355537.3,ENST00000585628.1	chr19	30934467:30936639:31025753:31025906:31038849:31039375,	31025754	31025906	31025765	31025765	Nonsense_Mutation	G	T	p.E728*
LUAD	TCGA-78-7220-01	TASP1	ENST00000337743.4,ENST00000465381.1	chr20	13415690:13415801:13463873:13463984:13509079:13509158,	13463874	13463984	13463883	13463883	Nonsense_Mutation	T	A	p.K326*
LUAD	TCGA-78-7220-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123964312	123964312	Nonsense_Mutation	A	T	p.K188*
LUAD	TCGA-78-7220-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509024	27509024	Nonsense_Mutation	C	A	p.G762*
LUAD	TCGA-78-7220-01	DYNLL1	ENST00000242577.6	chr12	120933915:120934019:120934218:120934356:120935875:120936040,	120934219	120934356	120934291	120934291	Nonsense_Mutation	G	T	p.E23*
LUAD	TCGA-78-7220-01	DYNLL1	ENST00000392508.2	chr12	120933915:120934019:120934204:120934356:120935875:120936040,	120934205	120934356	120934291	120934291	Nonsense_Mutation	G	T	p.E23*
LUAD	TCGA-78-7220-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114070030	114070030	Nonsense_Mutation	C	A	p.E226*
LUAD	TCGA-78-7220-01	ABCC8	ENST00000526921.1,ENST00000389817.3,ENST00000302539.4,ENST00000529967.1	chr11	17428434:17428676:17428900:17429000:17429938:17430064,	17428901	17429000	17428910	17428910	Nonsense_Mutation	C	A	p.E972*
LUAD	TCGA-78-7220-01	ASF1B	ENST00000474890.1	chr19	14232343:14232520:14236933:14237049:14247159:14247365,	14236934	14237049	14236936	14236936	Nonsense_Mutation	G	A	p.Q75*
LUAD	TCGA-78-7220-01	ATG7	ENST00000354449.3,ENST00000424071.1,ENST00000446450.2,ENST00000354956.5	chr3	11383673:11383753:11389350:11389509:11399891:11400084,	11389351	11389509	11389429	11389429	Nonsense_Mutation	G	T	p.E402*
LUAD	TCGA-78-7220-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000584067.1,ENST00000444976.1,ENST00000395804.3	chr17	17050632:17050701:17053457:17053547:17057619:17057729,	17053458	17053547	17053524	17053524	Nonsense_Mutation	A	T	p.R448*
LUAD	TCGA-78-7535-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
LUAD	TCGA-78-7535-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098578	144098578	Nonsense_Mutation	G	T	p.C135*
LUAD	TCGA-78-7535-01	ZNF451	ENST00000444273.2,ENST00000515290.1,ENST00000491832.2,ENST00000357489.3,ENST00000370706.4,ENST00000510483.1,ENST00000502749.1	chr6	56963858:56963939:56989531:56989657:56993526:56993584,	56989532	56989657	56989634	56989634	Nonsense_Mutation	G	T	p.E97*
LUAD	TCGA-78-7536-01	NCS1	ENST00000458469.1,ENST00000372398.3	chr9	132985360:132985438:132988667:132988783:132995268:132996388,	132988668	132988783	132988695	132988695	Nonsense_Mutation	G	T	p.E168*
LUAD	TCGA-78-7536-01	DPF2	ENST00000528416.1,ENST00000532264.1,ENST00000530973.1,ENST00000532102.1	chr11	65111225:65111308:65111461:65111540:65113136:65113177,	65111462	65111540	65111510	65111510	Nonsense_Mutation	G	T	p.E203*
LUAD	TCGA-78-7536-01	TTC23L	ENST00000502674.1,ENST00000505624.1,ENST00000514080.1,ENST00000506758.1	chr5	34840776:34840844:34845591:34845778:34850289:34850413,	34845592	34845778	34845695	34845695	Nonsense_Mutation	A	T	p.K58*
LUAD	TCGA-78-7536-01	ZNF341	ENST00000483118.1	chr20	32354656:32354847:32357889:32358098:32371537:32371670,	32357890	32358098	32357916	32357916	Nonsense_Mutation	T	A	p.C480*
LUAD	TCGA-78-7536-01	DIAPH3	ENST00000400319.1,ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4	chr13	60590204:60590279:60616823:60616954:60667761:60667866,	60616824	60616954	60616906	60616906	Nonsense_Mutation	C	A	p.E182*
LUAD	TCGA-78-7536-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000451855.1,ENST00000372249.1,ENST00000357304.4	chr9	134353860:134354006:134354638:134354780:134357112:134357195,	134354639	134354780	134354714	134354714	Nonsense_Mutation	G	T	p.E1612*
LUAD	TCGA-78-7536-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000471582.1,ENST00000422202.1	chr20	61959430:61959497:61959682:61959850:61960936:61961013,	61959683	61959850	61959818	61959818	Nonsense_Mutation	G	A	p.W1263*
LUAD	TCGA-78-7537-01	MYOM1	ENST00000581075.1,ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3086035:3086149:3089171:3089239:3089534:3089594,	3089172	3089239	3089175	3089175	Nonsense_Mutation	G	T	p.C1378*
LUAD	TCGA-78-7539-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367527	37367527	Nonsense_Mutation	C	T	p.Q1384*
LUAD	TCGA-78-7539-01	KLHL20	ENST00000209884.4	chr1	173685141:173685205:173702851:173703425:173720902:173721061,	173702852	173703425	173703135	173703135	Nonsense_Mutation	G	T	p.E103*
LUAD	TCGA-78-7539-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000366576.3	chr1	237054432:237054629:237057656:237057857:237058657:237058850,	237057657	237057857	237057700	237057700	Nonsense_Mutation	C	G	p.S1083*
LUAD	TCGA-78-7539-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20108581	20108581	Nonsense_Mutation	G	T	p.E326*
LUAD	TCGA-78-7539-01	AMPD2	ENST00000474459.1	chr1	110162761:110162900:110168283:110168414:110168781:110168820,	110168284	110168414	110168300	110168300	Nonsense_Mutation	C	A	p.S134*
LUAD	TCGA-78-7539-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12123906	12123906	Nonsense_Mutation	C	G	p.S1293*
LUAD	TCGA-78-7542-01	CHPT1	ENST00000229266.3,ENST00000549128.1,ENST00000549872.1	chr12	102108305:102108423:102110505:102110590:102113900:102114004,	102110506	102110590	102110587	102110587	Nonsense_Mutation	T	A	p.Y215*
LUAD	TCGA-78-7542-01	PTMA	ENST00000409683.1	chr2	232576677:232576693:232577161:232577226:232577513:232577536,	232577162	232577226	232577179	232577179	Nonsense_Mutation	G	T	p.E80*
LUAD	TCGA-78-7542-01	PTMA	ENST00000466801.1,ENST00000412128.1,ENST00000341369.7,ENST00000409115.3,ENST00000448874.1,ENST00000410064.1,ENST00000481928.1,ENST00000409321.1	chr2	232576677:232576693:232577152:232577226:232577513:232577536,	232577153	232577226	232577179	232577179	Nonsense_Mutation	G	T	p.E80*
LUAD	TCGA-78-7633-01	FXYD5	ENST00000588699.1	chr19	35657044:35657074:35657153:35657331:35660468:35660536,	35657154	35657331	35657273	35657273	Nonsense_Mutation	G	T	p.G178*
LUAD	TCGA-78-8640-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415744	86415744	Nonsense_Mutation	C	G	p.Y212*
LUAD	TCGA-78-8640-01	PHF20	ENST00000374000.4,ENST00000481202.1,ENST00000439301.1,ENST00000339089.6,ENST00000374012.3	chr20	34459571:34459751:34487291:34487570:34501170:34501238,	34487292	34487570	34487415	34487415	Nonsense_Mutation	T	A	p.L469*
LUAD	TCGA-78-8640-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634985	70634985	Nonsense_Mutation	G	T	p.S52*
LUAD	TCGA-78-8640-01	RAB11FIP1	ENST00000330843.4	chr8	37732032:37732840:37734626:37735069:37756588:37756972,	37734627	37735069	37734903	37734903	Nonsense_Mutation	T	A	p.K180*
LUAD	TCGA-78-8640-01	DCDC1	ENST00000597505.1	chr11	30953317:30953499:30973991:30974115:31014005:31014231,30953317:30953499:30973991:30974115:31086015:31086173,	30973992	30974115	30974028	30974028	Nonsense_Mutation	G	C	p.Y893*
LUAD	TCGA-78-8640-01	DNAJA3	ENST00000574895.1,ENST00000573120.1,ENST00000355296.4	chr16	4476048:4476093:4484384:4484518:4487402:4487486,	4484385	4484518	4484477	4484477	Nonsense_Mutation	C	T	p.R102*
LUAD	TCGA-78-8640-01	MND1	ENST00000509752.1,ENST00000240488.3,ENST00000504860.1	chr4	154315413:154315488:154318370:154318485:154330122:154330167,	154318371	154318485	154318395	154318395	Nonsense_Mutation	G	T	p.E126*
LUAD	TCGA-78-8640-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022739	11022739	Nonsense_Mutation	G	T	p.E285*
LUAD	TCGA-78-8640-01	FMO4	ENST00000475780.1	chr1	171288956:171289096:171292142:171292331:171293276:171293439,171288956:171289096:171292142:171292331:171306494:171306562,	171292143	171292331	171292287	171292287	Nonsense_Mutation	G	T	p.E93*
LUAD	TCGA-78-8655-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29347033	29347033	Nonsense_Mutation	G	T	p.E316*
LUAD	TCGA-78-8662-01	GALNT14	ENST00000481023.1,ENST00000464038.1,ENST00000496397.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000455477.1,ENST00000424136.1,ENST00000356174.3	chr2	31178595:31178605:31178777:31178843:31181262:31181330,	31178778	31178843	31178781	31178781	Nonsense_Mutation	G	A	p.Q177*
LUAD	TCGA-78-8662-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2,ENST00000431944.1	chr3	46496918:46496932:46497285:46497468:46497779:46497888,	46497286	46497468	46497383	46497383	Nonsense_Mutation	G	T	p.C134*
LUAD	TCGA-78-8662-01	ASPH	ENST00000379454.4,ENST00000541428.1	chr8	62460629:62460767:62465589:62465679:62468482:62468581,	62465590	62465679	62465664	62465664	Nonsense_Mutation	C	A	p.G489*
LUAD	TCGA-78-8662-01	BNIP1	ENST00000393770.4,ENST00000351486.5	chr5	172571548:172571632:172573868:172573961:172581324:172581416,	172573869	172573961	172573920	172573920	Nonsense_Mutation	A	T	p.K46*
LUAD	TCGA-78-8662-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1	chr3	174951720:174951994:174974199:174974319:175041963:175042114,	174974200	174974319	174974224	174974224	Nonsense_Mutation	G	T	p.G282*
LUAD	TCGA-78-8662-01	THOC2	ENST00000432353.1,ENST00000448128.1,ENST00000416618.1,ENST00000355725.4,ENST00000245838.8,ENST00000464992.2,ENST00000497887.1,ENST00000491737.1,ENST00000441692.1	chrX	122745350:122745367:122747249:122747407:122747489:122747559,	122747250	122747407	122747329	122747329	Nonsense_Mutation	G	T	p.S1533*
LUAD	TCGA-78-8662-01	PSPC1	ENST00000338910.4	chr13	20276639:20277500:20279801:20279971:20283681:20283739,	20279802	20279971	20279942	20279942	Nonsense_Mutation	G	A	p.Q416*
LUAD	TCGA-78-8662-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394399	64394399	Nonsense_Mutation	C	G	p.S259*
LUAD	TCGA-78-8662-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112460321:112460493:112460953:112461087:112461961:112462124,	112460954	112461087	112461007	112461007	Nonsense_Mutation	G	T	p.Y1019*
LUAD	TCGA-78-8662-01	TBC1D12	ENST00000225235.4	chr10	96282100:96282210:96290958:96291217:96292784:96293054,	96290959	96291217	96291056	96291056	Nonsense_Mutation	G	T	p.G700*
LUAD	TCGA-78-8662-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048659	42048659	Nonsense_Mutation	C	A	p.E604*
LUAD	TCGA-78-8662-01	PLSCR4	ENST00000383083.2,ENST00000460885.1,ENST00000433593.2	chr3	145914492:145914580:145924312:145924548:145938601:145938712,	145924313	145924548	145924492	145924492	Nonsense_Mutation	C	A	p.G59*
LUAD	TCGA-80-5607-01	CDH13	ENST00000268613.10,ENST00000566620.1,ENST00000539548.2,ENST00000428848.3	chr16	83813572:83813806:83816858:83817077:83828627:83828682,	83816859	83817077	83816885	83816885	Nonsense_Mutation	C	T	p.Q648*
LUAD	TCGA-80-5607-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84374727	84374727	Nonsense_Mutation	C	T	p.W223*
LUAD	TCGA-80-5607-01	CTDSPL2	ENST00000396780.1	chr15	44719839:44719970:44751188:44751398:44776421:44776512,	44751189	44751398	44751319	44751319	Nonsense_Mutation	C	G	p.S36*
LUAD	TCGA-80-5607-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697979	17697979	Nonsense_Mutation	C	T	p.Q573*
LUAD	TCGA-80-5608-01	ACSM2B	ENST00000565232.1,ENST00000329697.6,ENST00000569163.1,ENST00000569364.1,ENST00000563943.1,ENST00000565322.1,ENST00000567001.1	chr16	20563465:20563619:20565098:20565242:20566590:20566616,	20565099	20565242	20565132	20565132	Nonsense_Mutation	G	T	p.S236*
LUAD	TCGA-80-5611-01	SMARCA4	ENST00000590574.1,ENST00000344626.4,ENST00000589677.1,ENST00000429416.3,ENST00000358026.2,ENST00000450717.3,ENST00000591545.1,ENST00000541122.2,ENST00000413806.3,ENST00000444061.3	chr19	11114015:11114073:11118577:11118699:11121056:11121207,	11118578	11118699	11118587	11118587	Nonsense_Mutation	G	T	p.E671*
LUAD	TCGA-83-5908-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818284	214818284	Nonsense_Mutation	G	T	p.E1791*
LUAD	TCGA-83-5908-01	WDR70	ENST00000511906.1,ENST00000504564.1,ENST00000265107.4	chr5	37438023:37438083:37443340:37443474:37479935:37480089,	37443341	37443474	37443461	37443461	Nonsense_Mutation	C	T	p.Q225*
LUAD	TCGA-83-5908-01	POC5	ENST00000428202.2,ENST00000514838.2,ENST00000446329.2	chr5	74973598:74973775:74981031:74981309:74984836:74984990,	74981032	74981309	74981228	74981228	Nonsense_Mutation	G	C	p.S404*
LUAD	TCGA-86-6851-01	MAGI1	ENST00000483466.1,ENST00000402939.2,ENST00000497477.2,ENST00000460329.2,ENST00000472257.1,ENST00000463103.2,ENST00000330909.8,ENST00000479287.1	chr3	65438932:65439015:65455957:65456159:65464266:65464309,	65455958	65456159	65456114	65456114	Nonsense_Mutation	A	T	p.L268*
LUAD	TCGA-86-6851-01	MAGI1	ENST00000470990.1,ENST00000464060.1	chr3	65438932:65439015:65455957:65456162:65464266:65464309,	65455958	65456162	65456114	65456114	Nonsense_Mutation	A	T	p.L268*
LUAD	TCGA-86-6851-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000554874.1,ENST00000381232.3	chr14	72191386:72191552:72196771:72197018:72200382:72200529,	72196772	72197018	72196853	72196853	Nonsense_Mutation	G	T	p.E1587*
LUAD	TCGA-86-6851-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	138163182:138163377:138169178:138169442:138208414:138208593,	138169179	138169442	138169276	138169276	Nonsense_Mutation	T	A	p.Y931*
LUAD	TCGA-86-6851-01	FER	ENST00000281092.4	chr5	108103793:108103939:108133824:108134090:108168470:108168521,	108133825	108134090	108134001	108134001	Nonsense_Mutation	A	T	p.K40*
LUAD	TCGA-86-6851-01	RAMP1	ENST00000254661.4	chr2	238768618:238768646:238785865:238786004:238820169:238820598,238768265:238768370:238785865:238786004:238820169:238820436,	238785866	238786004	238785925	238785925	Nonsense_Mutation	G	T	p.E38*
LUAD	TCGA-86-6851-01	NXPE2	ENST00000389586.4,ENST00000375475.5	chr11	114550378:114550484:114568766:114569500:114574712:114574768,	114568767	114569500	114569052	114569052	Nonsense_Mutation	G	T	p.G140*
LUAD	TCGA-86-6851-01	CEP152	ENST00000325747.5,ENST00000380950.2	chr15	49040639:49040807:49044545:49044666:49048099:49048750,	49044546	49044666	49044594	49044594	Nonsense_Mutation	C	A	p.G1140*
LUAD	TCGA-86-6851-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37729733	37729733	Nonsense_Mutation	C	A	p.E863*
LUAD	TCGA-86-6851-01	MATN2	ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000523490.1,ENST00000524308.1	chr8	98900302:98900470:98943180:98943750:98954004:98954127,	98943181	98943750	98943360	98943360	Nonsense_Mutation	G	T	p.E108*
LUAD	TCGA-86-6851-01	KCNH8	ENST00000452398.1	chr3	19190025:19190287:19295145:19295379:19322689:19322821,	19295146	19295379	19295220	19295220	Nonsense_Mutation	G	T	p.E51*
LUAD	TCGA-86-6851-01	TPK1	ENST00000547966.1,ENST00000378098.4,ENST00000360057.3	chr7	144150520:144150756:144245583:144245695:144320258:144320354,144150520:144150756:144245583:144245695:144288515:144288662,	144245584	144245695	144245632	144245632	Nonsense_Mutation	C	A	p.G72*
LUAD	TCGA-86-6851-01	ASB15	ENST00000447789.1,ENST00000540573.1,ENST00000451558.1,ENST00000434204.1,ENST00000275699.3,ENST00000451215.1	chr7	123256417:123256549:123257632:123257791:123264622:123264868,	123257633	123257791	123257734	123257734	Nonsense_Mutation	G	T	p.E132*
LUAD	TCGA-86-7701-01	ZDHHC9	ENST00000371064.3,ENST00000357166.6	chrX	128944880:128944977:128945381:128945485:128946693:128946796,	128945382	128945485	128945479	128945479	Nonsense_Mutation	C	A	p.G262*
LUAD	TCGA-86-7701-01	UGGT1	ENST00000259253.6,ENST00000376723.3,ENST00000375990.3	chr2	128855002:128855138:128861505:128861588:128865511:128865628,	128861506	128861588	128861574	128861574	Nonsense_Mutation	C	A	p.S64*
LUAD	TCGA-86-7701-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
LUAD	TCGA-86-7701-01	PKD1	ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2147148:2147242:2147319:2147504:2147728:2147778,	2147320	2147504	2147377	2147377	Nonsense_Mutation	C	A	p.E3450*
LUAD	TCGA-86-7711-01	ATP10A	ENST00000356865.6,ENST00000555815.1	chr15	25936861:25936938:25939965:25940293:25947062:25947247,	25939966	25940293	25940215	25940215	Nonsense_Mutation	T	A	p.K947*
LUAD	TCGA-86-7713-01	MYO1G	ENST00000488554.1,ENST00000495831.1,ENST00000258787.7,ENST00000464434.1,ENST00000480503.1,ENST00000463516.1,ENST00000483585.1	chr7	45010190:45010336:45010433:45010658:45011271:45011388,	45010434	45010658	45010484	45010484	Nonsense_Mutation	T	A	p.K341*
LUAD	TCGA-86-7713-01	ZNF560	ENST00000301480.4	chr19	9581067:9581194:9581971:9582054:9583854:9583935,	9581972	9582054	9582050	9582050	Nonsense_Mutation	C	T	p.W81*
LUAD	TCGA-86-7714-01	SPATA20	ENST00000505559.1,ENST00000508598.1	chr17	48624569:48624646:48625025:48625315:48625643:48625814,	48625026	48625315	48625107	48625107	Nonsense_Mutation	G	A	p.W35*
LUAD	TCGA-86-7714-01	SPATA20	ENST00000006658.6,ENST00000511845.1	chr17	48624569:48624646:48625080:48625128:48625403:48625522,48624569:48624646:48625080:48625128:48625643:48625814,	48625081	48625128	48625107	48625107	Nonsense_Mutation	G	A	p.W35*
LUAD	TCGA-86-7714-01	SPATA20	ENST00000505456.2	chr17	48624569:48624646:48625025:48625128:48625643:48625814,48624569:48624646:48625025:48625128:48625403:48625522,	48625026	48625128	48625107	48625107	Nonsense_Mutation	G	A	p.W35*
LUAD	TCGA-86-7714-01	SPATA20	ENST00000505085.1	chr17	48624569:48624646:48625080:48625315:48625643:48625814,	48625081	48625315	48625107	48625107	Nonsense_Mutation	G	A	p.W35*
LUAD	TCGA-86-7954-01	TEC	ENST00000511471.2,ENST00000505452.1,ENST00000381501.3	chr4	48143372:48143436:48147095:48147312:48147424:48147596,	48147096	48147312	48147134	48147134	Nonsense_Mutation	C	A	p.E478*
LUAD	TCGA-86-7954-01	GATAD2A	ENST00000358713.3,ENST00000429563.2,ENST00000252577.5,ENST00000418032.3,ENST00000404158.1,ENST00000360315.3	chr19	19606562:19606694:19606860:19607028:19609251:19609531,	19606861	19607028	19606951	19606951	Nonsense_Mutation	G	T	p.G283*
LUAD	TCGA-86-7954-01	KCNH1	ENST00000367007.4	chr1	210977308:210977508:211092981:211093411:211192205:211192598,	211092982	211093411	211093086	211093086	Nonsense_Mutation	G	T	p.S426*
LUAD	TCGA-86-7954-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63510244	63510244	Nonsense_Mutation	C	A	p.S364*
LUAD	TCGA-86-7954-01	SLC37A3	ENST00000326232.9,ENST00000447932.2,ENST00000473060.1,ENST00000460560.1	chr7	140035176:140035239:140037083:140037149:140043211:140043330,140035271:140035304:140037083:140037149:140043211:140043289,	140037084	140037149	140037109	140037109	Nonsense_Mutation	C	T	p.W456*
LUAD	TCGA-86-7955-01	CCDC51	ENST00000395694.2	chr3	48475116:48475281:48476226:48476546:48481397:48481475,	48476227	48476546	48476460	48476460	Nonsense_Mutation	C	A	p.G27*
LUAD	TCGA-86-7955-01	MED20	ENST00000409060.1,ENST00000409312.1	chr6	41877082:41877260:41884522:41884677:41888742:41888831,	41884523	41884677	41884592	41884592	Nonsense_Mutation	C	A	p.E34*
LUAD	TCGA-86-7955-01	DRC1	ENST00000288710.2	chr2	26667089:26667224:26667583:26667816:26671558:26671671,	26667584	26667816	26667616	26667616	Nonsense_Mutation	G	A	p.W399*
LUAD	TCGA-86-7955-01	GLB1	ENST00000307377.8,ENST00000399402.3,ENST00000307363.5,ENST00000445488.2	chr3	33038220:33038836:33055547:33055802:33058200:33058332,	33055548	33055802	33055583	33055583	Nonsense_Mutation	G	A	p.Q567*
LUAD	TCGA-86-7955-01	GABRB3	ENST00000541819.2,ENST00000311550.5,ENST00000299267.4	chr15	26828478:26828561:26866460:26866681:27017548:27017616,	26866461	26866681	26866525	26866525	Nonsense_Mutation	C	A	p.G189*
LUAD	TCGA-86-8056-01	AKR1C4	ENST00000380448.1,ENST00000263126.1	chr10	5246366:5246456:5247719:5247797:5248237:5248360,	5247720	5247797	5247726	5247726	Nonsense_Mutation	G	T	p.E126*
LUAD	TCGA-86-8056-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20119122:20119291:20122482:20122718:20124800:20124955,	20122483	20122718	20122656	20122656	Nonsense_Mutation	G	T	p.E2122*
LUAD	TCGA-86-8056-01	LONP1	ENST00000585374.1,ENST00000540670.2,ENST00000360614.3,ENST00000593119.1	chr19	5708352:5708414:5711781:5712013:5713144:5713264,	5711782	5712013	5711936	5711936	Nonsense_Mutation	G	C	p.S239*
LUAD	TCGA-86-8056-01	LONP1	ENST00000590729.1	chr19	5708352:5708414:5711829:5712013:5713144:5713264,	5711830	5712013	5711936	5711936	Nonsense_Mutation	G	C	p.S239*
LUAD	TCGA-86-8056-01	TPM4	ENST00000538887.1,ENST00000344824.6	chr19	16178347:16178548:16186856:16186982:16192722:16192856,	16186857	16186982	16186908	16186908	Nonsense_Mutation	G	T	p.E56*
LUAD	TCGA-86-8056-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616566	116616566	Nonsense_Mutation	G	A	p.R544*
LUAD	TCGA-86-8056-01	ADAMTS2	ENST00000251582.7,ENST00000523450.1	chr5	178541289:178541325:178548661:178548751:178549644:178549768,	178548662	178548751	178548720	178548720	Nonsense_Mutation	G	T	p.Y1040*
LUAD	TCGA-86-8056-01	USP4	ENST00000431357.1	chr3	49335984:49336068:49337899:49338124:49339816:49339896,49335984:49336068:49337899:49338124:49339870:49339975,	49337900	49338124	49338025	49338025	Nonsense_Mutation	C	A	p.E416*
LUAD	TCGA-86-8073-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578095	14578095	Nonsense_Mutation	G	T	p.E424*
LUAD	TCGA-86-8073-01	CUBN	ENST00000377833.4	chr10	16882883:16883046:16893233:16893442:16911634:16911852,	16893234	16893442	16893278	16893278	Nonsense_Mutation	C	A	p.E3207*
LUAD	TCGA-86-8073-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50053081	50053081	Nonsense_Mutation	G	T	p.E638*
LUAD	TCGA-86-8073-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000553455.1,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64586147:64586327:64587644:64587779:64588729:64588851,	64587645	64587779	64587670	64587670	Nonsense_Mutation	C	A	p.S735*
LUAD	TCGA-86-8073-01	CNTNAP5	ENST00000431078.1	chr2	125530375:125530594:125547478:125547718:125555672:125555897,	125547479	125547718	125547511	125547511	Nonsense_Mutation	G	T	p.G928*
LUAD	TCGA-86-8073-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157469856	157469856	Nonsense_Mutation	G	T	p.G884*
LUAD	TCGA-86-8073-01	DSTYK	ENST00000367162.3,ENST00000367161.3	chr1	205138290:205138960:205156545:205156934:205180398:205180694,	205156546	205156934	205156764	205156764	Nonsense_Mutation	C	A	p.E146*
LUAD	TCGA-86-8073-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20854605:20854782:20856063:20856222:20857396:20857456,	20856064	20856222	20856104	20856104	Nonsense_Mutation	C	A	p.E882*
LUAD	TCGA-86-8073-01	CCDC136	ENST00000464672.1,ENST00000494552.1,ENST00000297788.4	chr7	128446428:128446449:128446741:128446912:128447413:128447599,	128446742	128446912	128446838	128446838	Nonsense_Mutation	G	T	p.E449*
LUAD	TCGA-86-8073-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6026958	6026958	Nonsense_Mutation	C	A	p.G480*
LUAD	TCGA-86-8073-01	TDRD1	ENST00000369280.1,ENST00000369282.1,ENST00000251864.2,ENST00000369281.2	chr10	115963146:115963326:115963831:115963975:115964480:115964652,	115963832	115963975	115963868	115963868	Nonsense_Mutation	C	T	p.Q340*
LUAD	TCGA-86-8073-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
LUAD	TCGA-86-8073-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16025966:16026379:16032695:16032809:16035394:16035497,	16032696	16032809	16032708	16032708	Nonsense_Mutation	C	A	p.G69*
LUAD	TCGA-86-8073-01	ABHD12	ENST00000339157.5,ENST00000376542.3	chr20	25303960:25304066:25319862:25319987:25371148:25371389,	25319863	25319987	25319884	25319884	Nonsense_Mutation	T	A	p.K99*
LUAD	TCGA-86-8073-01	DKKL1	ENST00000596402.1,ENST00000221498.2,ENST00000597873.1	chr19	49867911:49868011:49868765:49868906:49877973:49878156,49867911:49868011:49868765:49868906:49869049:49869142,	49868766	49868906	49868844	49868844	Nonsense_Mutation	G	T	p.E88*
LUAD	TCGA-86-8073-01	BICD1	ENST00000281474.5	chr12	32490432:32490640:32491719:32491913:32520603:32520679,32490432:32490750:32491719:32491913:32520603:32520679,	32491720	32491913	32491886	32491886	Nonsense_Mutation	G	T	p.E913*
LUAD	TCGA-86-8073-01	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27751437	27751437	Nonsense_Mutation	G	T	p.G607*
LUAD	TCGA-86-8073-01	PRKCI	ENST00000295797.4	chr3	169977756:169977846:169981166:169981217:169985702:169985788,	169981167	169981217	169981184	169981184	Nonsense_Mutation	G	T	p.E111*
LUAD	TCGA-86-8073-01	DYM	ENST00000269445.6,ENST00000577481.1,ENST00000584977.1	chr18	46917989:46918015:46956624:46956817:46986767:46986997,	46956625	46956817	46956761	46956761	Nonsense_Mutation	C	A	p.G2*
LUAD	TCGA-86-8076-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145111287:145111426:145111520:145111658:145111850:145112021,	145111521	145111658	145111642	145111642	Nonsense_Mutation	C	A	p.E575*
LUAD	TCGA-86-8278-01	MKS1	ENST00000393120.2,ENST00000337050.7,ENST00000580127.1,ENST00000546108.1,ENST00000313863.6,ENST00000581180.1	chr17	56294026:56294097:56295980:56296090:56296511:56296591,	56295981	56296090	56295993	56295993	Nonsense_Mutation	G	A	p.Q60*
LUAD	TCGA-86-8278-01	MAP4K3	ENST00000341681.5,ENST00000536018.1,ENST00000437545.1,ENST00000263881.3	chr2	39513992:39514105:39515261:39515421:39517432:39517475,	39515262	39515421	39515342	39515342	Nonsense_Mutation	G	C	p.S465*
LUAD	TCGA-86-8279-01	STRIP1	ENST00000369796.1,ENST00000369795.3,ENST00000485775.1,ENST00000473429.1	chr1	110587636:110587700:110589301:110589373:110590163:110590238,	110589302	110589373	110589344	110589344	Nonsense_Mutation	G	T	p.E487*
LUAD	TCGA-86-8279-01	ARHGAP15	ENST00000295095.6	chr2	144381701:144381836:144460987:144461093:144525557:144525917,	144460988	144461093	144460993	144460993	Nonsense_Mutation	C	T	p.Q382*
LUAD	TCGA-86-8279-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578050	14578050	Nonsense_Mutation	G	T	p.E409*
LUAD	TCGA-86-8279-01	KIFC1	ENST00000428849.2	chr6	33371505:33371906:33372628:33373408:33373972:33374141,	33372629	33373408	33372692	33372692	Nonsense_Mutation	C	T	p.Q274*
LUAD	TCGA-86-8279-01	ZCRB1	ENST00000266529.3,ENST00000552673.1	chr12	42706732:42707000:42707491:42707567:42707675:42707788,	42707492	42707567	42707554	42707554	Nonsense_Mutation	C	A	p.E154*
LUAD	TCGA-86-8279-01	DYNAP	ENST00000321600.1	chr18	52258445:52258570:52262169:52262334:52265043:52265910,	52262170	52262334	52262228	52262228	Nonsense_Mutation	C	A	p.S65*
LUAD	TCGA-86-8279-01	LARP4B	ENST00000316157.3	chr10	890916:890995:909682:909823:910062:910210,	909683	909823	909761	909761	Nonsense_Mutation	C	A	p.E118*
LUAD	TCGA-86-8279-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32017774:32018098:32020446:32020770:32021164:32021482,	32020447	32020770	32020582	32020582	Nonsense_Mutation	G	A	p.Q2994*
LUAD	TCGA-86-8279-01	EDC4	ENST00000358933.5,ENST00000536072.2,ENST00000573992.1,ENST00000574770.1	chr16	67911411:67911559:67911643:67911748:67912068:67912178,	67911644	67911748	67911713	67911713	Nonsense_Mutation	A	T	p.K287*
LUAD	TCGA-86-8279-01	HHAT	ENST00000391905.3,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000261458.3	chr1	210502296:210502448:210536195:210536263:210560811:210560925,210522276:210522410:210536195:210536263:210560811:210560925,	210536196	210536263	210536201	210536201	Nonsense_Mutation	G	T	p.E33*
LUAD	TCGA-86-8279-01	RPL37	ENST00000508493.1	chr5	40834299:40834367:40834572:40834708:40835284:40835314,	40834573	40834708	40834631	40834631	Nonsense_Mutation	G	C	p.Y27*
LUAD	TCGA-86-8281-01	PSG5	ENST00000599812.1,ENST00000407356.1,ENST00000366175.3,ENST00000342951.6	chr19	43674206:43674290:43679366:43679621:43680021:43680300,	43679367	43679621	43679578	43679578	Nonsense_Mutation	G	C	p.Y251*
LUAD	TCGA-86-8281-01	TMCO4	ENST00000496528.1,ENST00000488449.1,ENST00000294543.6,ENST00000375122.2,ENST00000375127.1	chr1	20097838:20097975:20107072:20107259:20113518:20113610,	20107073	20107259	20107215	20107215	Nonsense_Mutation	G	A	p.Q13*
LUAD	TCGA-86-8281-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90049089	90049089	Nonsense_Mutation	C	T	p.Q294*
LUAD	TCGA-86-8358-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3678444:3678780:3679848:3680106:3681988:3682288,	3679849	3680106	3680041	3680041	Nonsense_Mutation	T	A	p.R532*
LUAD	TCGA-86-8358-01	HSPA8	ENST00000534319.1,ENST00000534624.1,ENST00000227378.3,ENST00000526110.1,ENST00000524552.1,ENST00000533540.1,ENST00000532636.1	chr11	122928959:122929192:122929339:122929538:122929766:122929811,	122929340	122929538	122929364	122929364	Nonsense_Mutation	T	A	p.K500*
LUAD	TCGA-86-8358-01	RPL7	ENST00000396465.1,ENST00000396467.1,ENST00000396466.1,ENST00000352983.2	chr8	74203277:74203487:74203786:74203896:74204007:74204138,	74203787	74203896	74203860	74203860	Nonsense_Mutation	G	C	p.Y115*
LUAD	TCGA-86-8358-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3677232:3677535:3677731:3677989:3678444:3678780,	3677732	3677989	3677796	3677796	Nonsense_Mutation	G	C	p.Y772*
LUAD	TCGA-86-8358-01	CELF4	ENST00000589386.1	chr18	34833817:34833901:34839083:34839227:34844636:34844717,	34839084	34839227	34839128	34839128	Nonsense_Mutation	G	T	p.S438*
LUAD	TCGA-86-8358-01	CUX1	ENST00000549414.2	chr7	101840219:101840585:101843350:101843452:101844639:101845484,	101843351	101843452	101843431	101843431	Nonsense_Mutation	G	T	p.E692*
LUAD	TCGA-86-8358-01	UNC93A	ENST00000230256.3,ENST00000366829.2	chr6	167717406:167717621:167719402:167719538:167721266:167721398,	167719403	167719538	167719496	167719496	Nonsense_Mutation	A	T	p.K312*
LUAD	TCGA-86-8358-01	ACSF3	ENST00000540697.1	chr16	89160290:89160404:89169011:89169167:89178499:89178654,	89169012	89169167	89169122	89169122	Nonsense_Mutation	G	A	p.W259*
LUAD	TCGA-86-8358-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42357021	42357021	Nonsense_Mutation	C	A	p.S398*
LUAD	TCGA-86-8358-01	PEAR1	ENST00000292357.7,ENST00000338302.3,ENST00000469390.1	chr1	156880025:156880172:156880409:156880535:156882038:156882167,	156880410	156880535	156880456	156880456	Nonsense_Mutation	C	A	p.C624*
LUAD	TCGA-86-8358-01	LMBR1	ENST00000434503.1,ENST00000448926.1,ENST00000540390.1,ENST00000359422.4,ENST00000477983.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156549086:156549159:156554827:156554892:156555801:156555870,	156554828	156554892	156554848	156554848	Nonsense_Mutation	G	A	p.Q222*
LUAD	TCGA-86-8358-01	SERPINC1	ENST00000367698.3	chr1	173879891:173880029:173880936:173881152:173883690:173883803,	173880937	173881152	173881080	173881080	Nonsense_Mutation	G	A	p.R161*
LUAD	TCGA-86-8358-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48843231:48843347:48845579:48845732:48846524:48846650,	48845580	48845732	48845668	48845668	Nonsense_Mutation	A	T	p.L563*
LUAD	TCGA-86-8359-01	DNAJC12	ENST00000483798.2,ENST00000225171.2	chr10	69556839:69556968:69565340:69565545:69571281:69571421,	69565341	69565545	69565452	69565452	Nonsense_Mutation	C	A	p.E131*
LUAD	TCGA-86-8585-01	NUDCD1	ENST00000239690.4,ENST00000427660.2	chr8	110305572:110305753:110308612:110308798:110334537:110334692,	110308613	110308798	110308672	110308672	Nonsense_Mutation	C	A	p.G134*
LUAD	TCGA-86-8585-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47635539:47635694:47637232:47637511:47639552:47639699,	47637233	47637511	47637473	47637473	Nonsense_Mutation	G	T	p.G203*
LUAD	TCGA-86-8585-01	CDH11	ENST00000394156.3	chr16	64981449:64982002:64982511:64982690:64984669:64984846,	64982512	64982690	64982678	64982678	Nonsense_Mutation	A	T	p.L636*
LUAD	TCGA-86-8585-01	TCERG1	ENST00000549332.1,ENST00000394421.2,ENST00000507175.1,ENST00000296702.5	chr5	145836745:145836898:145838446:145838900:145843113:145843356,	145838447	145838900	145838696	145838696	Nonsense_Mutation	C	T	p.Q230*
LUAD	TCGA-86-8669-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449856	85449856	Nonsense_Mutation	G	T	p.E429*
LUAD	TCGA-86-8672-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187518153	187518153	Nonsense_Mutation	C	A	p.E4181*
LUAD	TCGA-86-8672-01	CPA1	ENST00000484324.1,ENST00000011292.3,ENST00000491460.1,ENST00000476062.1	chr7	130021948:130022050:130023231:130023333:130023524:130023635,	130023232	130023333	130023296	130023296	Nonsense_Mutation	G	A	p.W183*
LUAD	TCGA-86-8672-01	SLC43A2	ENST00000571376.1	chr17	1519855:1519924:1520010:1520063:1531008:1531093,	1520011	1520063	1520013	1520013	Nonsense_Mutation	C	A	p.E71*
LUAD	TCGA-86-8672-01	SLC43A2	ENST00000572135.1,ENST00000574743.1,ENST00000571650.1,ENST00000382147.4,ENST00000301335.5	chr17	1518272:1518328:1519855:1520063:1531008:1531093,	1519856	1520063	1520013	1520013	Nonsense_Mutation	C	A	p.E71*
LUAD	TCGA-86-8673-01	SYTL1	ENST00000483926.1,ENST00000485269.1,ENST00000543823.1,ENST00000496001.1,ENST00000318074.5	chr1	27676879:27676976:27677284:27677443:27677748:27677827,	27677285	27677443	27677309	27677309	Nonsense_Mutation	C	T	p.Q344*
LUAD	TCGA-86-8673-01	LCAT	ENST00000573538.1	chr16	67974148:67974381:67976265:67976490:67976573:67976669,67974639:67974734:67976265:67976490:67976573:67976669,	67976266	67976490	67976479	67976479	Nonsense_Mutation	C	A	p.E179*
LUAD	TCGA-86-8673-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000414883.1,ENST00000282641.2,ENST00000373995.3,ENST00000395495.1,ENST00000473480.1,ENST00000395489.2	chr10	52595833:52596072:52601621:52601752:52603747:52603882,	52601622	52601752	52601737	52601737	Nonsense_Mutation	C	A	p.E77*
LUAD	TCGA-86-8673-01	TIMD4	ENST00000274532.2	chr5	156353273:156353323:156376661:156376742:156378522:156378801,156375426:156375510:156376661:156376742:156378522:156378801,	156376662	156376742	156376712	156376712	Nonsense_Mutation	C	T	p.W237*
LUAD	TCGA-86-8673-01	KLRF1	ENST00000279544.3	chr12	9984911:9985010:9985898:9986048:9994407:9994550,	9985899	9986048	9985931	9985931	Nonsense_Mutation	G	T	p.G73*
LUAD	TCGA-86-8673-01	PLCB4	ENST00000378473.3,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9343542:9343622:9346107:9346161:9351860:9351942,	9346108	9346161	9346111	9346111	Nonsense_Mutation	G	A	p.W151*
LUAD	TCGA-86-8673-01	TBC1D9	ENST00000442267.2	chr4	141590787:141590958:141591873:141592080:141598047:141598255,	141591874	141592080	141591909	141591909	Nonsense_Mutation	C	A	p.E411*
LUAD	TCGA-86-8673-01	ATP10B	ENST00000327245.5	chr5	160059135:160059374:160061360:160061613:160063188:160063316,	160061361	160061613	160061523	160061523	Nonsense_Mutation	C	A	p.E407*
LUAD	TCGA-86-8673-01	PSG1	ENST00000436291.2,ENST00000595356.1,ENST00000312439.6,ENST00000244296.2	chr19	43372252:43372507:43372907:43373186:43375918:43376197,	43372908	43373186	43373167	43373167	Nonsense_Mutation	G	C	p.Y243*
LUAD	TCGA-86-8673-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329481	33329481	Nonsense_Mutation	T	A	p.K1527*
LUAD	TCGA-86-8673-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61836183	61836183	Nonsense_Mutation	T	A	p.R1486*
LUAD	TCGA-86-8673-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75684582:75685156:75687020:75687204:75688598:75688837,	75687021	75687204	75687134	75687134	Nonsense_Mutation	C	A	p.E722*
LUAD	TCGA-86-8674-01	SLC4A1	ENST00000262418.6	chr17	42328528:42328700:42328786:42328956:42330485:42330739,	42328787	42328956	42328858	42328858	Nonsense_Mutation	G	A	p.Q804*
LUAD	TCGA-86-8674-01	BDP1	ENST00000358731.4,ENST00000380675.2	chr5	70855808:70856064:70858100:70858347:70860580:70863647,	70858101	70858347	70858315	70858315	Nonsense_Mutation	C	T	p.Q2571*
LUAD	TCGA-86-8674-01	ZCWPW1	ENST00000490089.1,ENST00000490721.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100001800:100001867:100002635:100002716:100004316:100004421,	100002636	100002716	100002653	100002653	Nonsense_Mutation	C	A	p.E412*
LUAD	TCGA-86-A456-01	SLC22A12	ENST00000473690.1,ENST00000336464.7,ENST00000377572.1,ENST00000377574.1,ENST00000377567.2	chr11	64367838:64367947:64368206:64368410:64368959:64369023,	64368207	64368410	64368374	64368374	Nonsense_Mutation	T	A	p.L521*
LUAD	TCGA-86-A456-01	NCKAP5	ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133430861:133430878:133483199:133483332:133486388:133486525,	133483200	133483332	133483248	133483248	Nonsense_Mutation	C	A	p.G1889*
LUAD	TCGA-86-A456-01	CHMP5	ENST00000419016.2,ENST00000223500.8	chr9	33267850:33267897:33270620:33270714:33271149:33271221,	33270621	33270714	33270625	33270625	Nonsense_Mutation	G	T	p.E76*
LUAD	TCGA-86-A4JF-01	DPF2	ENST00000532052.1,ENST00000528416.1,ENST00000252268.4	chr11	65113211:65113274:65113400:65113529:65113717:65113830,	65113401	65113529	65113496	65113496	Nonsense_Mutation	G	T	p.E291*
LUAD	TCGA-86-A4JF-01	BTNL8	ENST00000511704.1	chr5	180326273:180326359:180338338:180338614:180374511:180374625,	180338339	180338614	180338442	180338442	Nonsense_Mutation	G	A	p.W167*
LUAD	TCGA-86-A4JF-01	MYO5C	ENST00000443683.2,ENST00000559459.1,ENST00000261839.7,ENST00000558902.1	chr15	52561949:52562057:52563959:52564041:52564776:52564920,	52563960	52564041	52564029	52564029	Nonsense_Mutation	G	A	p.R255*
LUAD	TCGA-86-A4JF-01	PTCD3	ENST00000254630.7	chr2	86344177:86344282:86346043:86346167:86348601:86348714,	86346044	86346167	86346107	86346107	Nonsense_Mutation	C	T	p.R160*
LUAD	TCGA-86-A4JF-01	NRCAM	ENST00000379024.4,ENST00000351718.4,ENST00000417701.1,ENST00000379028.3,ENST00000425651.2,ENST00000413765.2,ENST00000379022.4	chr7	107847971:107848103:107849864:107850049:107864168:107864280,	107849865	107850049	107849966	107849966	Nonsense_Mutation	A	T	p.L325*
LUAD	TCGA-86-A4JF-01	C4BPA	ENST00000367070.3	chr1	207307748:207307937:207314450:207314621:207317162:207317330,	207314451	207314621	207314564	207314564	Nonsense_Mutation	C	T	p.Q463*
LUAD	TCGA-86-A4JF-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32041423:32041729:32046809:32047142:32049144:32049450,	32046810	32047142	32046972	32046972	Nonsense_Mutation	G	A	p.Q1405*
LUAD	TCGA-86-A4JF-01	LDHA	ENST00000542179.1,ENST00000430553.2,ENST00000375710.3,ENST00000537296.1,ENST00000486690.2,ENST00000540430.1,ENST00000538451.1,ENST00000545215.1,ENST00000422447.3,ENST00000379412.5	chr11	18424386:18424560:18425240:18425358:18426995:18427042,	18425241	18425358	18425354	18425354	Nonsense_Mutation	G	T	p.E236*
LUAD	TCGA-86-A4JF-01	TBCEL	ENST00000533712.1	chr11	120925760:120926017:120929053:120929180:120930677:120930794,120924338:120924441:120929053:120929180:120930677:120930794,	120929054	120929180	120929158	120929158	Nonsense_Mutation	C	T	p.R273*
LUAD	TCGA-86-A4JF-01	SLC25A21	ENST00000331299.5,ENST00000546428.2,ENST00000555449.1	chr14	37194774:37194882:37198711:37198771:37203711:37203778,	37198712	37198771	37198738	37198738	Nonsense_Mutation	C	A	p.G102*
LUAD	TCGA-86-A4JF-01	CTRL	ENST00000574481.1,ENST00000571044.1	chr16	67964822:67964902:67965000:67965104:67965703:67965765,	67965001	67965104	67965100	67965100	Nonsense_Mutation	G	T	p.C19*
LUAD	TCGA-86-A4JF-01	HDAC3	ENST00000495485.1,ENST00000305264.3	chr5	141009610:141009692:141014377:141014520:141016114:141016197,	141014378	141014520	141014505	141014505	Nonsense_Mutation	G	A	p.Q52*
LUAD	TCGA-86-A4JF-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000522181.1	chr8	92406024:92406079:92406163:92406267:92407289:92407877,	92406164	92406267	92406193	92406193	Nonsense_Mutation	G	T	p.G621*
LUAD	TCGA-86-A4JF-01	POC1B	ENST00000378528.2,ENST00000549035.1,ENST00000313546.3,ENST00000548715.1,ENST00000393179.4	chr12	89819063:89819156:89853414:89853495:89860546:89860699,	89853415	89853495	89853465	89853465	Nonsense_Mutation	G	A	p.Q225*
LUAD	TCGA-86-A4JF-01	AQP8	ENST00000219660.5,ENST00000566125.1	chr16	25235682:25235897:25238388:25238523:25239764:25240253,	25238389	25238523	25238510	25238510	Nonsense_Mutation	G	T	p.G242*
LUAD	TCGA-86-A4P7-01	POLR1A	ENST00000424089.1,ENST00000263857.6,ENST00000486964.1,ENST00000409681.1	chr2	86308739:86308829:86310204:86310291:86315688:86315792,	86310205	86310291	86310235	86310235	Nonsense_Mutation	C	A	p.E263*
LUAD	TCGA-86-A4P7-01	LIN7A	ENST00000552864.1	chr12	81205243:81205462:81239508:81239718:81242029:81242101,	81239509	81239718	81239532	81239532	Nonsense_Mutation	G	A	p.Q154*
LUAD	TCGA-86-A4P7-01	FUK	ENST00000464499.1,ENST00000378912.2,ENST00000571514.1,ENST00000288078.6	chr16	70509550:70509670:70512174:70512362:70512453:70512553,	70512175	70512362	70512186	70512186	Nonsense_Mutation	C	T	p.Q885*
LUAD	TCGA-91-6828-01	RHBDF2	ENST00000389760.4,ENST00000587640.1,ENST00000591885.1,ENST00000313080.4	chr17	74473261:74473380:74473738:74473867:74474887:74475091,	74473739	74473867	74473792	74473792	Nonsense_Mutation	C	A	p.E250*
LUAD	TCGA-91-6828-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46439462:46439602:46455023:46455178:46456398:46456587,	46455024	46455178	46455071	46455071	Nonsense_Mutation	G	A	p.Q977*
LUAD	TCGA-91-6828-01	FYCO1	ENST00000296137.2,ENST00000535325.1	chr3	46011166:46011257:46014579:46014723:46016730:46016837,	46014580	46014723	46014653	46014653	Nonsense_Mutation	C	A	p.E156*
LUAD	TCGA-91-6828-01	THEM5	ENST00000368817.5	chr1	151819757:151819890:151820213:151820338:151820657:151820768,	151820214	151820338	151820280	151820280	Nonsense_Mutation	G	A	p.Q212*
LUAD	TCGA-91-6829-01	ZSWIM5	ENST00000359600.5	chr1	45504607:45504745:45506063:45506210:45508890:45509067,	45506064	45506210	45506070	45506070	Nonsense_Mutation	T	A	p.K584*
LUAD	TCGA-91-6829-01	MAPK4	ENST00000400384.2,ENST00000540640.1	chr18	48248307:48248469:48252331:48252545:48255527:48256471,	48252332	48252545	48252469	48252469	Nonsense_Mutation	G	T	p.E331*
LUAD	TCGA-91-6829-01	TFAP4	ENST00000574639.1,ENST00000204517.6	chr16	4308189:4308250:4310090:4310246:4310455:4310596,	4310091	4310246	4310143	4310143	Nonsense_Mutation	G	T	p.S257*
LUAD	TCGA-91-6829-01	FSHR	ENST00000406846.2,ENST00000346173.3,ENST00000469138.1,ENST00000454032.1,ENST00000541117.1,ENST00000419927.1	chr2	49210236:49210305:49216115:49216193:49217704:49217776,	49216116	49216193	49216159	49216159	Nonsense_Mutation	C	A	p.E161*
LUAD	TCGA-91-6829-01	GPM6A	ENST00000506894.1	chr4	176594904:176594987:176622725:176622918:176733341:176733400,176594904:176594987:176622725:176622918:176923459:176923483,	176622726	176622918	176622818	176622818	Nonsense_Mutation	G	T	p.C46*
LUAD	TCGA-91-6829-01	GTF2IRD1	ENST00000424337.2,ENST00000265755.3,ENST00000476977.1,ENST00000470715.1,ENST00000455841.2	chr7	73973956:73973985:74004179:74004257:74005153:74005346,	74004180	74004257	74004251	74004251	Nonsense_Mutation	A	T	p.K798*
LUAD	TCGA-91-6829-01	SUGP1	ENST00000585444.1	chr19	19420905:19421009:19427055:19427402:19431271:19431279,	19427056	19427402	19427361	19427361	Nonsense_Mutation	C	A	p.G26*
LUAD	TCGA-91-6829-01	SUGP1	ENST00000247001.5,ENST00000334782.5,ENST00000535070.1,ENST00000585763.1,ENST00000588731.2,ENST00000588580.2,ENST00000606725.1	chr19	19420905:19421009:19427230:19427402:19431271:19431279,	19427231	19427402	19427361	19427361	Nonsense_Mutation	C	A	p.G26*
LUAD	TCGA-91-6829-01	ARHGAP15	ENST00000552641.1,ENST00000295095.6	chr2	143886981:143887035:143913045:143913224:143959702:143959771,	143913046	143913224	143913138	143913138	Nonsense_Mutation	A	T	p.R27*
LUAD	TCGA-91-6829-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73653580:73653681:73659325:73659419:73675089:73681194,	73659326	73659419	73659341	73659341	Nonsense_Mutation	G	T	p.E452*
LUAD	TCGA-91-6829-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168096787:168096996:168098202:168098488:168100181:168100336,	168098203	168098488	168098301	168098301	Nonsense_Mutation	G	T	p.C1343*
LUAD	TCGA-91-6829-01	MS4A3	ENST00000358152.2	chr11	59824175:59824213:59828618:59828789:59831734:59831791,	59828619	59828789	59828748	59828748	Nonsense_Mutation	G	T	p.G39*
LUAD	TCGA-91-6830-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000347330.5,ENST00000338641.4,ENST00000403999.3,ENST00000432151.1	chr22	30057193:30057328:30060978:30061053:30064321:30064435,	30060979	30061053	30061031	30061031	Nonsense_Mutation	C	G	p.S288*
LUAD	TCGA-91-6830-01	G6PC2	ENST00000282075.4,ENST00000375363.3	chr2	169761014:169761126:169763173:169763289:169764077:169764241,	169763174	169763289	169763265	169763265	Nonsense_Mutation	C	T	p.Q178*
LUAD	TCGA-91-6830-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50717283:50717440:50718058:50718205:50718433:50718500,	50718059	50718205	50718193	50718193	Nonsense_Mutation	C	A	p.E1419*
LUAD	TCGA-91-6830-01	GGA2	ENST00000309859.4,ENST00000567201.1	chr16	23497405:23497473:23498030:23498111:23499926:23500030,	23498031	23498111	23498078	23498078	Nonsense_Mutation	C	A	p.E205*
LUAD	TCGA-91-6831-01	GLT1D1	ENST00000413816.2,ENST00000539044.1,ENST00000442111.2,ENST00000281703.6	chr12	129338147:129338194:129360458:129360607:129373183:129373289,	129360459	129360607	129360514	129360514	Nonsense_Mutation	G	T	p.E42*
LUAD	TCGA-91-6835-01	GSG1L	ENST00000380897.3,ENST00000395724.3,ENST00000447459.2	chr16	27818807:27818875:27840109:27840277:27856270:27856382,	27840110	27840277	27840114	27840114	Nonsense_Mutation	C	A	p.E121*
LUAD	TCGA-91-6835-01	PSG11	ENST00000401740.1,ENST00000320078.7	chr19	43518232:43519522:43522921:43523200:43528842:43529208,	43522922	43523200	43523198	43523198	Nonsense_Mutation	C	A	p.E145*
LUAD	TCGA-91-6836-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574000	7574000	Nonsense_Mutation	C	A	p.E343*
LUAD	TCGA-91-6836-01	SLC13A2	ENST00000459818.2,ENST00000537681.1	chr17	26816231:26816360:26817324:26817386:26817471:26817608,	26817325	26817386	26817355	26817355	Nonsense_Mutation	G	T	p.E88*
LUAD	TCGA-91-6836-01	RABEP2	ENST00000358201.4,ENST00000544477.1,ENST00000357573.6	chr16	28917339:28917517:28919929:28920085:28922208:28922307,	28919930	28920085	28920082	28920082	Nonsense_Mutation	C	A	p.E365*
LUAD	TCGA-91-6840-01	STMN1	ENST00000357865.2,ENST00000399728.1,ENST00000455785.2,ENST00000374291.1	chr1	26227231:26227578:26227981:26228173:26230131:26230304,	26227982	26228173	26228095	26228095	Nonsense_Mutation	C	A	p.E89*
LUAD	TCGA-91-6840-01	PML	ENST00000268058.3,ENST00000435786.2,ENST00000566068.1,ENST00000268059.6,ENST00000395135.3,ENST00000569477.1	chr15	74317220:74317268:74325496:74325755:74326818:74326871,74324912:74325056:74325496:74325755:74326818:74326871,	74325497	74325755	74325578	74325578	Nonsense_Mutation	G	T	p.E446*
LUAD	TCGA-91-6840-01	PML	ENST00000569965.1,ENST00000436891.3	chr15	74317220:74317268:74325496:74325763:74326818:74326871,74324912:74325056:74325496:74325763:74326818:74326871,	74325497	74325763	74325578	74325578	Nonsense_Mutation	G	T	p.E446*
LUAD	TCGA-91-6848-01	DIS3L	ENST00000524795.1,ENST00000525109.1,ENST00000530537.1,ENST00000441424.2,ENST00000565281.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66601046:66601182:66604061:66604238:66606376:66606455,	66604062	66604238	66604125	66604125	Nonsense_Mutation	C	T	p.Q125*
LUAD	TCGA-91-6848-01	AOX1	ENST00000485965.1,ENST00000374700.2	chr2	201476106:201476216:201477331:201477516:201478526:201478689,	201477332	201477516	201477458	201477458	Nonsense_Mutation	G	T	p.G464*
LUAD	TCGA-91-6848-01	SLC7A1	ENST00000380752.5	chr13	30098268:30098390:30104674:30104849:30106960:30107119,	30104675	30104849	30104757	30104757	Nonsense_Mutation	C	A	p.G208*
LUAD	TCGA-91-6848-01	FATE1	ENST00000370350.3	chrX	150885743:150885871:150889866:150889973:150890374:150890453,	150889867	150889973	150889935	150889935	Nonsense_Mutation	C	A	p.Y101*
LUAD	TCGA-91-6848-01	A2M	ENST00000539638.1	chr12	9262909:9262930:9264754:9264807:9265955:9266139,	9264755	9264807	9264760	9264760	Nonsense_Mutation	C	A	p.E160*
LUAD	TCGA-91-6848-01	SCUBE3	ENST00000394681.1,ENST00000274938.7	chr6	35210797:35211013:35211370:35211532:35211739:35211907,	35211371	35211532	35211468	35211468	Nonsense_Mutation	C	A	p.C669*
LUAD	TCGA-91-6849-01	CPSF2	ENST00000298875.4,ENST00000555244.1	chr14	92624002:92624228:92625326:92625626:92627455:92627590,	92625327	92625626	92625582	92625582	Nonsense_Mutation	G	T	p.E693*
LUAD	TCGA-91-6849-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230571	46230571	Nonsense_Mutation	C	T	p.R274*
LUAD	TCGA-91-6849-01	ERBB4	ENST00000484594.1,ENST00000402597.1,ENST00000342788.4,ENST00000436443.1,ENST00000260943.6	chr2	212587117:212587259:212589800:212589919:212615363:212615429,	212589801	212589919	212589824	212589824	Nonsense_Mutation	C	A	p.G240*
LUAD	TCGA-91-7771-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	153994601:153994819:153995597:153995773:153998017:153998192,	153995598	153995773	153995740	153995740	Nonsense_Mutation	G	A	p.Q1386*
LUAD	TCGA-91-7771-01	SPEG	ENST00000396698.1,ENST00000312358.7,ENST00000464989.1,ENST00000498378.1	chr2	220309766:220309883:220312695:220313993:220315857:220316001,	220312696	220313993	220313108	220313108	Nonsense_Mutation	C	T	p.R410*
LUAD	TCGA-91-8496-01	ANKMY2	ENST00000306999.2,ENST00000447802.1	chr7	16644345:16644474:16649254:16649390:16650173:16650388,	16649255	16649390	16649287	16649287	Nonsense_Mutation	G	A	p.Q284*
LUAD	TCGA-91-8499-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368913.3	chr1	151110484:151110581:151110791:151110882:151111105:151111159,	151110792	151110882	151110864	151110864	Nonsense_Mutation	C	A	p.E159*
LUAD	TCGA-91-8499-01	MALT1	ENST00000348428.3,ENST00000589873.1,ENST00000345724.3	chr18	56402433:56402561:56409096:56409246:56411569:56411727,	56409097	56409246	56409233	56409233	Nonsense_Mutation	G	A	p.W580*
LUAD	TCGA-91-8499-01	NXPE2	ENST00000389586.4,ENST00000375475.5	chr11	114550378:114550484:114568766:114569500:114574712:114574768,	114568767	114569500	114569409	114569409	Nonsense_Mutation	C	T	p.Q259*
LUAD	TCGA-91-8499-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717708	89717708	Nonsense_Mutation	C	T	p.Q245*
LUAD	TCGA-91-8499-01	NANOS3	ENST00000591161.1	chr19	13976230:13976251:13988481:13988579:13991255:13991317,	13988482	13988579	13988558	13988558	Nonsense_Mutation	C	T	p.R147*
LUAD	TCGA-91-A4BC-01	PTPN2	ENST00000309660.5,ENST00000591115.1,ENST00000592059.1,ENST00000353319.4,ENST00000327283.3,ENST00000592776.1	chr18	12830941:12831040:12836789:12836890:12859162:12859253,	12836790	12836890	12836858	12836858	Nonsense_Mutation	C	A	p.E65*
LUAD	TCGA-91-A4BC-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130409107:130409260:130409451:130409739:130409934:130410222,	130409452	130409739	130409620	130409620	Nonsense_Mutation	C	A	p.G997*
LUAD	TCGA-91-A4BC-01	MARCH8	ENST00000395769.2,ENST00000319836.3,ENST00000395771.3,ENST00000453980.3,ENST00000602712.2	chr10	45956834:45956859:45959686:45959775:45984814:45984865,	45959687	45959775	45959700	45959700	Nonsense_Mutation	G	A	p.Q77*
LUAD	TCGA-91-A4BC-01	PGLYRP2	ENST00000340880.4	chr19	15582700:15582911:15586348:15587419:15590121:15590246,	15586349	15587419	15586769	15586769	Nonsense_Mutation	G	A	p.Q238*
LUAD	TCGA-91-A4BC-01	TMEM117	ENST00000550623.1	chr12	44238666:44238731:44537327:44537427:44605072:44605170,44338012:44338145:44537327:44537427:44605072:44605170,44477391:44477484:44537327:44537427:44605072:44605170,	44537328	44537427	44537359	44537359	Nonsense_Mutation	C	T	p.R148*
LUAD	TCGA-91-A4BC-01	B9D2	ENST00000243578.3	chr19	41860591:41860918:41863801:41863927:41869336:41869428,	41863802	41863927	41863868	41863868	Nonsense_Mutation	G	A	p.Q50*
LUAD	TCGA-91-A4BC-01	DYNLRB2	ENST00000561880.1	chr16	80577176:80577248:80582839:80583548:80584411:80584657,	80582840	80583548	80583392	80583392	Nonsense_Mutation	C	T	p.R31*
LUAD	TCGA-91-A4BC-01	DYNLRB2	ENST00000305904.6,ENST00000562982.1	chr16	80577176:80577248:80583380:80583548:80584411:80584657,	80583381	80583548	80583392	80583392	Nonsense_Mutation	C	T	p.R31*
LUAD	TCGA-91-A4BC-01	ZKSCAN3	ENST00000252211.2,ENST00000341464.5,ENST00000377255.3	chr6	28331079:28331162:28331468:28331592:28333202:28333541,	28331469	28331592	28331556	28331556	Nonsense_Mutation	G	T	p.E241*
LUAD	TCGA-93-7347-01	EIF3C	ENST00000331666.6,ENST00000566866.1,ENST00000564243.1,ENST00000566501.1,ENST00000395587.1	chr16	28726627:28726755:28734484:28734644:28734768:28734872,	28734485	28734644	28734627	28734627	Nonsense_Mutation	G	T	p.G307*
LUAD	TCGA-93-8067-01	ATAD3B	ENST00000308647.7,ENST00000472194.2	chr1	1417924:1417994:1420395:1420551:1421161:1421218,	1420396	1420551	1420549	1420549	Nonsense_Mutation	C	T	p.Q302*
LUAD	TCGA-93-8067-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394072	64394072	Nonsense_Mutation	C	G	p.S150*
LUAD	TCGA-93-8067-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875058	27875058	Nonsense_Mutation	G	C	p.S1190*
LUAD	TCGA-93-8067-01	MAP7	ENST00000454590.1,ENST00000438100.2,ENST00000354570.3,ENST00000544465.1,ENST00000432797.2	chr6	136687464:136687577:136693638:136693763:136698892:136699006,	136693639	136693763	136693704	136693704	Nonsense_Mutation	G	A	p.R271*
LUAD	TCGA-93-8067-01	DFFB	ENST00000468793.1,ENST00000378209.3,ENST00000477548.1,ENST00000378206.1,ENST00000339350.3,ENST00000475969.1	chr1	3786168:3786339:3789035:3789136:3800070:3800364,	3789036	3789136	3789064	3789064	Nonsense_Mutation	C	G	p.S237*
LUAD	TCGA-93-8067-01	DCBLD1	ENST00000534777.1,ENST00000296955.8,ENST00000338728.5	chr6	117860471:117860542:117861830:117861978:117862080:117862188,	117861831	117861978	117861837	117861837	Nonsense_Mutation	C	T	p.Q370*
LUAD	TCGA-93-8067-01	LSR	ENST00000347609.4,ENST00000361790.3,ENST00000597933.1	chr19	35749847:35749967:35752827:35752884:35757261:35757330,35749847:35749967:35752827:35752884:35753448:35753491,	35752828	35752884	35752837	35752837	Nonsense_Mutation	C	G	p.S243*
LUAD	TCGA-93-8067-01	SLC25A13	ENST00000416240.2,ENST00000265631.5,ENST00000542654.1	chr7	95761054:95761193:95775867:95776008:95799356:95799437,	95775868	95776008	95775921	95775921	Nonsense_Mutation	G	A	p.R468*
LUAD	TCGA-93-8067-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42356450	42356450	Nonsense_Mutation	C	T	p.Q208*
LUAD	TCGA-93-8067-01	RTN1	ENST00000432103.2,ENST00000395090.1,ENST00000474911.1,ENST00000267484.5,ENST00000342503.4	chr14	60070569:60070639:60072085:60072224:60074002:60074210,	60072086	60072224	60072181	60072181	Nonsense_Mutation	G	A	p.Q673*
LUAD	TCGA-93-8067-01	ZNF365	ENST00000395255.3,ENST00000410046.3	chr10	64134111:64134217:64135939:64136695:64148154:64148335,	64135940	64136695	64136182	64136182	Nonsense_Mutation	C	G	p.S77*
LUAD	TCGA-93-8067-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323899	59323899	Nonsense_Mutation	C	G	p.S293*
LUAD	TCGA-93-8067-01	SCAMP2	ENST00000268099.9,ENST00000569251.1,ENST00000563829.1,ENST00000569904.1	chr15	75137546:75137558:75137813:75137934:75140940:75140986,	75137814	75137934	75137884	75137884	Nonsense_Mutation	G	C	p.S262*
LUAD	TCGA-93-8067-01	MVB12A	ENST00000528911.1,ENST00000600514.1,ENST00000529939.1,ENST00000543795.1,ENST00000317040.7,ENST00000594784.1,ENST00000524382.1	chr19	17517053:17517105:17534306:17534426:17534501:17534608,17531346:17531443:17534306:17534426:17534501:17534608,17533252:17533267:17534306:17534426:17534501:17534608,	17534307	17534426	17534379	17534379	Nonsense_Mutation	C	G	p.S120*
LUAD	TCGA-93-8067-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101076134	101076134	Nonsense_Mutation	G	A	p.Q288*
LUAD	TCGA-93-A4JN-01	ZNF777	ENST00000247930.4	chr7	149128453:149130023:149133665:149133917:149148089:149148203,	149133666	149133917	149133780	149133780	Nonsense_Mutation	C	A	p.E409*
LUAD	TCGA-93-A4JN-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951075	48951075	Nonsense_Mutation	G	T	p.E413*
LUAD	TCGA-93-A4JN-01	DDX39B	ENST00000456976.1,ENST00000456662.1,ENST00000428098.1,ENST00000376177.2,ENST00000396172.1,ENST00000419338.1,ENST00000462256.1,ENST00000481456.1,ENST00000449757.1,ENST00000427214.1,ENST00000458640.1,ENST00000418897.1	chr6	31506539:31506632:31506923:31507051:31508098:31508441,	31506924	31507051	31507049	31507049	Nonsense_Mutation	G	A	p.Q72*
LUAD	TCGA-93-A4JQ-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650870	71650870	Nonsense_Mutation	C	G	p.S1409*
LUAD	TCGA-93-A4JQ-01	PSG8	ENST00000404209.4,ENST00000406636.3,ENST00000306511.4	chr19	43258484:43258739:43259139:43259418:43262153:43262287,	43259140	43259418	43259218	43259218	Nonsense_Mutation	C	A	p.E304*
LUAD	TCGA-93-A4JQ-01	RNH1	ENST00000397615.2,ENST00000534797.1,ENST00000397614.1,ENST00000354420.2,ENST00000525701.1,ENST00000525522.1,ENST00000356187.5,ENST00000438658.2,ENST00000397604.3,ENST00000533410.1	chr11	498456:498627:498762:498933:499014:499185,	498763	498933	498910	498910	Nonsense_Mutation	G	C	p.S213*
LUAD	TCGA-95-7039-01	COL14A1	ENST00000537875.1,ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000498051.2,ENST00000434620.1	chr8	121237326:121237453:121238865:121239005:121239458:121239591,	121238866	121239005	121239003	121239003	Nonsense_Mutation	G	T	p.E668*
LUAD	TCGA-95-7039-01	NDUFV3	ENST00000460259.1,ENST00000354250.2	chr21	44317048:44317157:44323291:44324386:44328973:44329215,	44323292	44324386	44323960	44323960	Nonsense_Mutation	G	T	p.E280*
LUAD	TCGA-95-7039-01	HHIPL1	ENST00000357223.2	chr14	100111479:100111799:100118560:100119207:100123336:100123480,	100118561	100119207	100118597	100118597	Nonsense_Mutation	G	T	p.E98*
LUAD	TCGA-95-7039-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741461	37741461	Nonsense_Mutation	G	T	p.E599*
LUAD	TCGA-95-7039-01	HNRNPA3	ENST00000411529.2,ENST00000392524.2,ENST00000435711.1	chr2	178080717:178080916:178081230:178081320:178081403:178081475,	178081231	178081320	178081299	178081299	Nonsense_Mutation	C	T	p.Q186*
LUAD	TCGA-95-7039-01	UBE2D1	ENST00000373910.4	chr10	60123368:60123446:60124530:60124636:60127682:60127776,	60124531	60124636	60124613	60124613	Nonsense_Mutation	C	G	p.S94*
LUAD	TCGA-95-7039-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000442536.2,ENST00000355730.3,ENST00000458317.2,ENST00000415929.1,ENST00000457718.1,ENST00000450444.1	chr7	47463756:47463782:47467909:47467974:47474879:47475002,	47467910	47467974	47467916	47467916	Nonsense_Mutation	G	C	p.S128*
LUAD	TCGA-95-7039-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113169173	113169173	Nonsense_Mutation	C	A	p.E2903*
LUAD	TCGA-95-7039-01	ANKRD26	ENST00000445828.1	chr10	27283969:27284076:27294551:27294652:27295845:27295891,	27294552	27294652	27294557	27294557	Nonsense_Mutation	C	A	p.E1699*
LUAD	TCGA-95-7039-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167240119:167240272:167245607:167245805:167246839:167247027,	167245608	167245805	167245610	167245610	Nonsense_Mutation	G	A	p.Q516*
LUAD	TCGA-95-7039-01	MYH2	ENST00000245503.5,ENST00000397183.2	chr17	10424472:10424749:10426406:10426502:10426624:10426729,	10426407	10426502	10426462	10426462	Nonsense_Mutation	A	T	p.L1873*
LUAD	TCGA-95-7039-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275488	114275488	Nonsense_Mutation	C	A	p.S1905*
LUAD	TCGA-95-7039-01	BCAN	ENST00000329117.5,ENST00000361588.5,ENST00000424639.1	chr1	156616919:156616967:156617299:156617474:156617774:156617902,	156617300	156617474	156617404	156617404	Nonsense_Mutation	C	T	p.Q191*
LUAD	TCGA-95-7039-01	PAN2	ENST00000547994.1,ENST00000440411.3,ENST00000257931.5	chr12	56722325:56722425:56726596:56726992:56727645:56727760,	56726597	56726992	56726626	56726626	Nonsense_Mutation	C	A	p.E85*
LUAD	TCGA-95-7039-01	SYTL1	ENST00000483926.1,ENST00000485269.1,ENST00000543823.1,ENST00000496001.1,ENST00000318074.5	chr1	27676879:27676976:27677284:27677443:27677748:27677827,	27677285	27677443	27677381	27677381	Nonsense_Mutation	G	T	p.E368*
LUAD	TCGA-95-7039-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222301176:222301328:222301780:222301842:222307548:222307734,	222301781	222301842	222301814	222301814	Nonsense_Mutation	G	T	p.Y701*
LUAD	TCGA-95-7039-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673154	186673154	Nonsense_Mutation	C	A	p.S6463*
LUAD	TCGA-95-7043-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938803	76938803	Nonsense_Mutation	C	A	p.E649*
LUAD	TCGA-95-7043-01	BCAT1	ENST00000539780.1	chr12	25034234:25034345:25047208:25047409:25054747:25054819,25034234:25034345:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25054747:25054819,	25047209	25047409	25047340	25047340	Nonsense_Mutation	C	A	p.G50*
LUAD	TCGA-95-7043-01	ARHGAP4	ENST00000454164.1	chrX	153175465:153175539:153175959:153176065:153176153:153176288,	153175960	153176065	153176039	153176039	Nonsense_Mutation	C	A	p.E655*
LUAD	TCGA-95-7043-01	ARHGAP4	ENST00000494397.1	chrX	153175465:153175539:153175624:153176065:153176153:153176288,	153175625	153176065	153176039	153176039	Nonsense_Mutation	C	A	p.E655*
LUAD	TCGA-95-7043-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000566885.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72193531:72193681:72195281:72195404:72196269:72196380,	72195282	72195404	72195371	72195371	Nonsense_Mutation	G	A	p.R971*
LUAD	TCGA-95-7043-01	SIGLEC8	ENST00000321424.3	chr19	51960437:51960485:51960714:51960993:51961187:51961706,	51960715	51960993	51960828	51960828	Nonsense_Mutation	G	T	p.S207*
LUAD	TCGA-95-7043-01	XPO6	ENST00000304658.5,ENST00000574435.1,ENST00000565698.1	chr16	28157492:28157524:28163979:28164106:28167394:28167438,	28163980	28164106	28164033	28164033	Nonsense_Mutation	G	A	p.Q391*
LUAD	TCGA-95-7043-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45849964:45850125:45852969:45853209:45855945:45856024,	45852970	45853209	45853099	45853099	Nonsense_Mutation	T	A	p.K1023*
LUAD	TCGA-95-7043-01	ITGB5	ENST00000483168.1,ENST00000608657.1,ENST00000296181.4,ENST00000608107.1	chr3	124567265:124567405:124578088:124578293:124592292:124592378,	124578089	124578293	124578287	124578287	Nonsense_Mutation	C	A	p.G55*
LUAD	TCGA-95-7043-01	ADAMTSL3	ENST00000567476.1,ENST00000569510.1,ENST00000561483.1,ENST00000565653.1,ENST00000286744.5	chr15	84373140:84373260:84442274:84442402:84473401:84473447,	84442275	84442402	84442319	84442319	Nonsense_Mutation	G	A	p.W78*
LUAD	TCGA-95-7043-01	NRCAM	ENST00000379024.4,ENST00000351718.4,ENST00000417701.1,ENST00000379028.3,ENST00000425651.2,ENST00000413765.2,ENST00000379022.4	chr7	107871474:107871597:107872769:107872966:107875026:107875132,	107872770	107872966	107872866	107872866	Nonsense_Mutation	C	A	p.E111*
LUAD	TCGA-95-7043-01	CAMKK1	ENST00000381771.2,ENST00000381769.2,ENST00000348335.2,ENST00000158166.5	chr17	3776702:3776756:3779516:3779716:3783639:3783728,	3779517	3779716	3779708	3779708	Nonsense_Mutation	G	A	p.Q307*
LUAD	TCGA-95-7043-01	SND1	ENST00000483503.1,ENST00000468621.1,ENST00000354725.3,ENST00000492772.1	chr7	127334881:127335002:127338928:127339007:127341216:127341267,	127338929	127339007	127338952	127338952	Nonsense_Mutation	G	T	p.E125*
LUAD	TCGA-95-7043-01	C6orf118	ENST00000543069.1,ENST00000230301.8	chr6	165711465:165711590:165712931:165712991:165713852:165713975,	165712932	165712991	165712974	165712974	Nonsense_Mutation	G	T	p.Y194*
LUAD	TCGA-95-7043-01	VIM	ENST00000487938.1,ENST00000544301.1,ENST00000469543.1,ENST00000224237.5	chr10	17275768:17275930:17276691:17276817:17277167:17277388,	17276692	17276817	17276749	17276749	Nonsense_Mutation	C	T	p.Q314*
LUAD	TCGA-95-7043-01	ECI2	ENST00000465828.1,ENST00000380120.2,ENST00000496241.2,ENST00000413766.2,ENST00000361538.2,ENST00000380125.2,ENST00000380118.3	chr6	4119419:4119509:4125483:4125604:4126368:4126471,	4125484	4125604	4125573	4125573	Nonsense_Mutation	T	A	p.K206*
LUAD	TCGA-95-7043-01	ECI2	ENST00000464583.1,ENST00000464057.1	chr6	4119419:4119509:4125483:4126471:4127995:4128065,	4125484	4126471	4125573	4125573	Nonsense_Mutation	T	A	p.K206*
LUAD	TCGA-95-7043-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652140	1652140	Nonsense_Mutation	C	A	p.E1138*
LUAD	TCGA-95-7043-01	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	34101613:34101659:34118468:34118798:34125367:34125704,	34118469	34118798	34118554	34118554	Nonsense_Mutation	C	A	p.Y388*
LUAD	TCGA-95-7562-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778661	84778661	Nonsense_Mutation	G	T	p.E192*
LUAD	TCGA-95-7562-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74868932:74869045:74878232:74878380:74898636:74898752,	74878233	74878380	74878337	74878337	Nonsense_Mutation	G	T	p.E96*
LUAD	TCGA-95-7562-01	ELAVL4	ENST00000448907.2,ENST00000371821.1,ENST00000371823.4,ENST00000371819.1,ENST00000357083.4,ENST00000371827.1,ENST00000474675.1,ENST00000371824.1	chr1	50642801:50642864:50659436:50659590:50661232:50661458,	50659437	50659590	50659564	50659564	Nonsense_Mutation	C	A	p.S161*
LUAD	TCGA-95-7562-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037878	49037878	Nonsense_Mutation	T	A	p.C706*
LUAD	TCGA-95-7562-01	DFFB	ENST00000468793.1,ENST00000378209.3,ENST00000477548.1,ENST00000378206.1,ENST00000339350.3,ENST00000475969.1,ENST00000338895.3,ENST00000491998.1,ENST00000481945.1	chr1	3784537:3784617:3786168:3786339:3789035:3789109,	3786169	3786339	3786208	3786208	Nonsense_Mutation	G	T	p.E184*
LUAD	TCGA-95-7562-01	LAMB3	ENST00000455193.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209789925:209789969:209790754:209790931:209791251:209791393,	209790755	209790931	209790826	209790826	Nonsense_Mutation	G	A	p.Q1053*
LUAD	TCGA-95-7567-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85441024:85441248:85445954:85446029:85449324:85449385,	85445955	85446029	85446027	85446027	Nonsense_Mutation	G	T	p.E251*
LUAD	TCGA-95-7567-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44047053:44047239:44049935:44050074:44051051:44051257,	44049936	44050074	44050063	44050063	Nonsense_Mutation	G	A	p.R51*
LUAD	TCGA-95-7567-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763974	74763974	Nonsense_Mutation	A	T	p.C258*
LUAD	TCGA-95-7567-01	CCT4	ENST00000544079.1	chr2	62110621:62110683:62112154:62112207:62115515:62115593,62107420:62107529:62112154:62112207:62115515:62115593,	62112155	62112207	62112169	62112169	Nonsense_Mutation	C	A	p.G56*
LUAD	TCGA-95-7567-01	GAK	ENST00000505819.1,ENST00000511163.1,ENST00000314167.4	chr4	890256:890337:891820:891946:898424:898567,	891821	891946	891922	891922	Nonsense_Mutation	G	A	p.Q184*
LUAD	TCGA-95-7567-01	COL4A6	ENST00000538570.1,ENST00000545689.1	chrX	107408599:107408716:107412724:107412850:107413838:107413946,	107412725	107412850	107412728	107412728	Nonsense_Mutation	G	A	p.R1231*
LUAD	TCGA-95-7567-01	DPYSL4	ENST00000338492.4	chr10	134015449:134015620:134016149:134016329:134017265:134017431,	134016150	134016329	134016185	134016185	Nonsense_Mutation	C	A	p.C439*
LUAD	TCGA-95-7567-01	MMAB	ENST00000544051.1,ENST00000541763.2,ENST00000542390.1,ENST00000537496.1,ENST00000420167.2,ENST00000545712.2	chr12	109999640:109999657:110002923:110002981:110006574:110006668,	110002924	110002981	110002929	110002929	Nonsense_Mutation	G	A	p.Q115*
LUAD	TCGA-95-7567-01	GALNT13	ENST00000392825.3	chr2	155265522:155265594:155295103:155295238:155306922:155307206,	155295104	155295238	155295153	155295153	Nonsense_Mutation	T	A	p.L482*
LUAD	TCGA-95-7567-01	PSG9	ENST00000270077.3	chr19	43762353:43762608:43763008:43763287:43771935:43772301,43762353:43762608:43763008:43763287:43766011:43766290,	43763009	43763287	43763165	43763165	Nonsense_Mutation	G	A	p.Q185*
LUAD	TCGA-95-7944-01	LPCAT4	ENST00000566581.1	chr15	34657299:34657429:34657759:34657902:34659187:34659377,	34657760	34657902	34657815	34657815	Nonsense_Mutation	G	A	p.Q68*
LUAD	TCGA-95-7944-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52403032	52403032	Nonsense_Mutation	G	A	p.Q54*
LUAD	TCGA-95-7944-01	SULT1A1	ENST00000562058.1,ENST00000314752.7,ENST00000395609.1,ENST00000563493.1,ENST00000566189.1,ENST00000395607.1,ENST00000569554.1,ENST00000564818.1	chr16	28619611:28619709:28619798:28619924:28620028:28620100,	28619799	28619924	28619801	28619801	Nonsense_Mutation	G	C	p.S91*
LUAD	TCGA-95-7944-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132059	51132059	Nonsense_Mutation	C	A	p.E125*
LUAD	TCGA-95-7947-01	C11orf74	ENST00000532470.2,ENST00000334307.5,ENST00000446510.2,ENST00000531554.1	chr11	36654833:36654988:36657600:36657667:36669565:36669701,	36657601	36657667	36657643	36657643	Nonsense_Mutation	G	T	p.E112*
LUAD	TCGA-95-7947-01	IPO4	ENST00000558780.1	chr14	24656605:24656785:24656872:24657019:24657421:24657463,	24656873	24657019	24656911	24656911	Nonsense_Mutation	G	A	p.Q124*
LUAD	TCGA-95-7947-01	IPO4	ENST00000559588.1,ENST00000561199.1,ENST00000558193.1,ENST00000560798.1,ENST00000558046.1,ENST00000561090.1,ENST00000560155.1,ENST00000354464.6	chr14	24656605:24656785:24656872:24657002:24657421:24657463,	24656873	24657002	24656911	24656911	Nonsense_Mutation	G	A	p.Q124*
LUAD	TCGA-95-7947-01	RHOJ	ENST00000555125.1,ENST00000316754.3	chr14	63671576:63671765:63735827:63735886:63747688:63747754,	63735828	63735886	63735881	63735881	Nonsense_Mutation	G	T	p.G78*
LUAD	TCGA-95-7947-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216285395:216285524:216286813:216286966:216288072:216288249,	216286814	216286966	216286823	216286823	Nonsense_Mutation	G	A	p.Q513*
LUAD	TCGA-95-7948-01	ALG8	ENST00000532440.1,ENST00000299626.5,ENST00000376156.3,ENST00000526737.1	chr11	77817855:77817992:77823695:77823816:77824931:77824987,77820487:77820627:77823695:77823816:77824931:77824987,	77823696	77823816	77823813	77823813	Nonsense_Mutation	G	A	p.Q261*
LUAD	TCGA-95-8039-01	FSIP2	ENST00000343098.5,ENST00000415915.1,ENST00000424728.1	chr2	186678271:186678769:186680097:186680198:186689160:186689207,	186680098	186680198	186680101	186680101	Nonsense_Mutation	G	T	p.E6866*
LUAD	TCGA-95-8494-01	ZFAND2B	ENST00000409206.1,ENST00000289528.5,ENST00000464902.1,ENST00000422255.1,ENST00000475533.1,ENST00000409336.1,ENST00000409097.1,ENST00000409594.1,ENST00000444522.2,ENST00000409217.1	chr2	220072484:220072501:220072608:220072760:220072977:220073070,	220072609	220072760	220072627	220072627	Nonsense_Mutation	G	T	p.E101*
LUAD	TCGA-95-A4VK-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3	chr9	119858322:119858430:119903604:119903757:119976636:119976832,	119903605	119903757	119903668	119903668	Nonsense_Mutation	G	A	p.Q369*
LUAD	TCGA-95-A4VK-01	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64111772	64111772	Nonsense_Mutation	G	T	p.E587*
LUAD	TCGA-95-A4VN-01	ANO4	ENST00000392977.3,ENST00000392979.3	chr12	101472970:101473053:101477455:101477596:101480437:101480591,	101477456	101477596	101477465	101477465	Nonsense_Mutation	C	T	p.R434*
LUAD	TCGA-95-A4VN-01	TCF4	ENST00000563760.1	chr18	52921734:52921931:52924545:52924622:52928696:52928764,	52924546	52924622	52924593	52924593	Nonsense_Mutation	C	A	p.G367*
LUAD	TCGA-95-A4VN-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000531848.1,ENST00000396253.3	chr11	18327681:18327894:18330492:18330626:18332287:18332480,	18330493	18330626	18330504	18330504	Nonsense_Mutation	A	T	p.C86*
LUAD	TCGA-95-A4VN-01	CATSPERB	ENST00000256343.3	chr14	92140519:92140566:92150220:92150287:92157866:92157899,	92150221	92150287	92150224	92150224	Nonsense_Mutation	C	A	p.E310*
LUAD	TCGA-95-A4VN-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833254	82833254	Nonsense_Mutation	G	T	p.E1478*
LUAD	TCGA-95-A4VN-01	MAN2A1	ENST00000261483.4	chr5	109178028:109178162:109181565:109181707:109183357:109183491,	109181566	109181707	109181594	109181594	Nonsense_Mutation	T	A	p.L910*
LUAD	TCGA-97-7546-01	BCOR	ENST00000397354.3,ENST00000442018.1,ENST00000413905.1,ENST00000342274.4,ENST00000378444.4,ENST00000378455.4,ENST00000427012.1,ENST00000378463.1	chrX	39916407:39916574:39921391:39921646:39921998:39922190,	39921392	39921646	39921532	39921532	Nonsense_Mutation	G	A	p.Q1396*
LUAD	TCGA-97-7546-01	GALNT14	ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31147063:31147129:31147605:31147689:31152260:31152353,	31147606	31147689	31147628	31147628	Nonsense_Mutation	C	A	p.E405*
LUAD	TCGA-97-7546-01	SF3A1	ENST00000439242.1,ENST00000215793.8	chr22	30736683:30736801:30737680:30737874:30738188:30738339,	30737681	30737874	30737734	30737734	Nonsense_Mutation	C	A	p.E275*
LUAD	TCGA-97-7546-01	ZNF350	ENST00000593596.1,ENST00000597788.1,ENST00000600703.1,ENST00000594929.1,ENST00000243644.4,ENST00000598254.1	chr19	52471911:52471926:52472257:52472384:52477598:52477784,	52472258	52472384	52472344	52472344	Nonsense_Mutation	C	T	p.W19*
LUAD	TCGA-97-7546-01	ZNF350	ENST00000601430.1	chr19	52471911:52471926:52472257:52472398:52477598:52477784,	52472258	52472398	52472344	52472344	Nonsense_Mutation	C	T	p.W19*
LUAD	TCGA-97-7547-01	ART3	ENST00000355810.4,ENST00000341029.5,ENST00000513494.1,ENST00000349321.3	chr4	76997033:76997111:77002976:77003688:77018796:77018829,	77002977	77003688	77003393	77003393	Nonsense_Mutation	T	A	p.Y162*
LUAD	TCGA-97-7547-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114070243	114070243	Nonsense_Mutation	C	A	p.E155*
LUAD	TCGA-97-7553-01	HUS1	ENST00000258774.5,ENST00000458191.1,ENST00000432325.1,ENST00000436444.1	chr7	48004896:48005035:48007402:48007522:48008815:48008915,	48007403	48007522	48007448	48007448	Nonsense_Mutation	G	A	p.Q239*
LUAD	TCGA-97-7554-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451569	55451569	Nonsense_Mutation	G	T	p.Y234*
LUAD	TCGA-97-7554-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41822061:41822177:41823220:41823400:41825543:41825592,41822061:41822177:41823220:41823400:41826911:41827133,	41823221	41823400	41823359	41823359	Nonsense_Mutation	G	A	p.Q269*
LUAD	TCGA-97-7937-01	COL25A1	ENST00000399127.1,ENST00000494183.1	chr4	109748290:109748344:109753535:109753589:109762850:109762877,109748290:109748344:109753535:109753589:109755510:109755546,	109753536	109753589	109753571	109753571	Nonsense_Mutation	C	A	p.G559*
LUAD	TCGA-97-7937-01	LLGL2	ENST00000392550.3,ENST00000578638.1,ENST00000545227.2,ENST00000577500.1,ENST00000577200.1,ENST00000578719.1,ENST00000167462.5	chr17	73565301:73565406:73566043:73566336:73566428:73566517,	73566044	73566336	73566089	73566089	Nonsense_Mutation	G	T	p.E543*
LUAD	TCGA-97-7937-01	MERTK	ENST00000439966.1	chr2	112656240:112656373:112686696:112686881:112702536:112702637,	112686697	112686881	112686861	112686861	Nonsense_Mutation	G	T	p.G76*
LUAD	TCGA-97-7937-01	MERTK	ENST00000421804.2	chr2	112656240:112656373:112686696:112687117:112702536:112702637,	112686697	112687117	112686861	112686861	Nonsense_Mutation	G	T	p.G76*
LUAD	TCGA-97-7937-01	IGLL5	ENST00000532223.2	chr22	23230008:23230439:23235876:23235998:23237554:23237565,	23235877	23235998	23235924	23235924	Nonsense_Mutation	G	A	p.W85*
LUAD	TCGA-97-7937-01	CUZD1	ENST00000368900.1,ENST00000368899.1,ENST00000392790.1,ENST00000368904.1,ENST00000368901.1,ENST00000545804.1	chr10	124594221:124594613:124595693:124595866:124596346:124596415,	124595694	124595866	124595810	124595810	Nonsense_Mutation	C	A	p.E292*
LUAD	TCGA-97-7938-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408305	155408305	Nonsense_Mutation	C	A	p.E1881*
LUAD	TCGA-97-7938-01	KCNK2	ENST00000486921.1,ENST00000444842.2,ENST00000391895.2,ENST00000391894.2,ENST00000470177.1	chr1	215342541:215342702:215345339:215345526:215368295:215368400,	215345340	215345526	215345448	215345448	Nonsense_Mutation	G	T	p.E249*
LUAD	TCGA-97-7938-01	CHRNB4	ENST00000261751.3	chr15	78916749:78917633:78921308:78922287:78923417:78923527,	78921309	78922287	78921882	78921882	Nonsense_Mutation	G	T	p.Y255*
LUAD	TCGA-97-7938-01	MSRB2	ENST00000376510.3	chr10	23399170:23399247:23408232:23408380:23409686:23409822,	23408233	23408380	23408279	23408279	Nonsense_Mutation	G	T	p.E115*
LUAD	TCGA-97-7938-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34927181	34927181	Nonsense_Mutation	G	T	p.G1882*
LUAD	TCGA-97-7938-01	APOH	ENST00000205948.6,ENST00000581797.1	chr17	64212908:64213085:64216671:64216860:64219815:64219891,	64216672	64216860	64216808	64216808	Nonsense_Mutation	A	T	p.Y156*
LUAD	TCGA-97-7938-01	MIB1	ENST00000578646.1,ENST00000261537.6	chr18	19348583:19348713:19353584:19353689:19358063:19358130,	19353585	19353689	19353597	19353597	Nonsense_Mutation	C	T	p.Q182*
LUAD	TCGA-97-7938-01	ZKSCAN7	ENST00000418719.1,ENST00000431636.1	chr3	44596935:44596973:44598421:44598962:44606978:44607147,	44598422	44598962	44598651	44598651	Nonsense_Mutation	C	T	p.Q38*
LUAD	TCGA-97-7941-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103738	47103738	Nonsense_Mutation	G	A	p.Q2070*
LUAD	TCGA-97-8171-01	EIF2AK1	ENST00000474029.1,ENST00000495565.1,ENST00000536084.1,ENST00000199389.6,ENST00000470168.1	chr7	6080783:6080850:6082563:6082624:6084192:6084292,	6082564	6082624	6082607	6082607	Nonsense_Mutation	C	A	p.E250*
LUAD	TCGA-97-8171-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634539	70634539	Nonsense_Mutation	G	A	p.R201*
LUAD	TCGA-97-8172-01	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28574374	28574374	Nonsense_Mutation	G	A	p.W266*
LUAD	TCGA-97-8172-01	HDAC9	ENST00000456174.2,ENST00000413380.1,ENST00000441542.2,ENST00000401921.1,ENST00000406072.1,ENST00000446646.1,ENST00000461159.2	chr7	18624914:18625145:18629958:18630109:18631138:18631156,	18629959	18630109	18630022	18630022	Nonsense_Mutation	G	T	p.E107*
LUAD	TCGA-97-8172-01	HDAC9	ENST00000417496.2,ENST00000428307.2,ENST00000406451.4,ENST00000432645.2,ENST00000405010.3,ENST00000523867.1,ENST00000524023.1,ENST00000441986.1	chr7	18624914:18625145:18629967:18630109:18631138:18631156,	18629968	18630109	18630022	18630022	Nonsense_Mutation	G	T	p.E107*
LUAD	TCGA-97-8172-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000579951.1,ENST00000400111.3,ENST00000544123.1,ENST00000545076.1,ENST00000578618.1,ENST00000427684.2,ENST00000542652.2	chr18	5395065:5395146:5395607:5395706:5396199:5396331,	5395608	5395706	5395685	5395685	Nonsense_Mutation	C	A	p.E999*
LUAD	TCGA-97-8174-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41193186	41193186	Nonsense_Mutation	G	T	p.E724*
LUAD	TCGA-97-8174-01	TACC3	ENST00000313288.4	chr4	1741685:1741729:1742552:1742713:1746244:1746351,	1742553	1742713	1742645	1742645	Nonsense_Mutation	G	T	p.E719*
LUAD	TCGA-97-8174-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138374230:138374368:138374983:138375116:138376531:138376677,	138374984	138375116	138375036	138375036	Nonsense_Mutation	A	T	p.L1008*
LUAD	TCGA-97-8176-01	FCHO1	ENST00000596536.1,ENST00000597512.1,ENST00000389133.4,ENST00000595033.1,ENST00000594202.1,ENST00000252771.7,ENST00000600676.1,ENST00000539407.1,ENST00000596951.1	chr19	17894964:17895044:17895533:17895733:17897382:17897438,	17895534	17895733	17895613	17895613	Nonsense_Mutation	C	G	p.S769*
LUAD	TCGA-97-8176-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807071	22807071	Nonsense_Mutation	C	A	p.E271*
LUAD	TCGA-97-8176-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100900	168100900	Nonsense_Mutation	C	T	p.Q1000*
LUAD	TCGA-97-8176-01	TEAD4	ENST00000443986.2,ENST00000358409.2	chr12	3126563:3126692:3127710:3127754:3128280:3128336,3121335:3121398:3127710:3127754:3128280:3128336,	3127711	3127754	3127715	3127715	Nonsense_Mutation	G	A	p.W163*
LUAD	TCGA-97-8179-01	KEAP1	ENST00000585845.1	chr19	10602935:10602938:10610070:10610262:10613916:10614234,	10610071	10610262	10610109	10610109	Nonsense_Mutation	G	A	p.Q201*
LUAD	TCGA-97-8179-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610109	10610109	Nonsense_Mutation	G	A	p.Q201*
LUAD	TCGA-97-8547-01	SLC9C2	ENST00000536496.1,ENST00000367714.3	chr1	173517527:173517691:173523871:173523953:173526478:173526647,	173523872	173523953	173523928	173523928	Nonsense_Mutation	G	C	p.S414*
LUAD	TCGA-97-A4LX-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437782	52437782	Nonsense_Mutation	G	C	p.S460*
LUAD	TCGA-97-A4M0-01	NUP98	ENST00000324932.7,ENST00000524563.1,ENST00000429801.1	chr11	3707293:3707424:3712576:3712719:3714461:3714605,	3712577	3712719	3712668	3712668	Nonsense_Mutation	C	A	p.E1455*
LUAD	TCGA-97-A4M0-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	532468:532610:549174:549291:553853:553920,	549175	549291	549213	549213	Nonsense_Mutation	C	A	p.E734*
LUAD	TCGA-97-A4M0-01	NLRP3	ENST00000336119.3,ENST00000391828.3	chr1	247592886:247593057:247597404:247597575:247607273:247607444,247587148:247588901:247597404:247597575:247607273:247607444,247592886:247593057:247597404:247597575:247599271:247599442,	247597405	247597575	247597517	247597517	Nonsense_Mutation	G	T	p.G814*
LUAD	TCGA-97-A4M0-01	PAWR	ENST00000328827.4,ENST00000551712.1	chr12	80007354:80007389:80014855:80014987:80083508:80083810,	80014856	80014987	80014936	80014936	Nonsense_Mutation	C	A	p.E190*
LUAD	TCGA-97-A4M0-01	PPP6R3	ENST00000265637.4	chr11	68287102:68287119:68305126:68305359:68312305:68312492,68228280:68228295:68305126:68305359:68312305:68312492,	68305127	68305359	68305259	68305259	Nonsense_Mutation	A	T	p.K43*
LUAD	TCGA-97-A4M0-01	CSMD3	ENST00000343508.3,ENST00000534172.1,ENST00000297405.5,ENST00000339701.3,ENST00000455883.2,ENST00000352409.3	chr8	113246593:113246706:113249418:113249577:113253948:113254014,	113249419	113249577	113249521	113249521	Nonsense_Mutation	C	A	p.G3509*
LUAD	TCGA-97-A4M0-01	OVCH1	ENST00000318184.5	chr12	29629138:29629232:29630034:29630165:29630273:29630406,	29630035	29630165	29630155	29630155	Nonsense_Mutation	A	T	p.C419*
LUAD	TCGA-97-A4M3-01	ADIPOQ	ENST00000320741.2	chr3	186560492:186560538:186570839:186571061:186571972:186572376,	186570840	186571061	186570860	186570860	Nonsense_Mutation	G	T	p.G5*
LUAD	TCGA-97-A4M3-01	XRCC5	ENST00000460284.1,ENST00000392133.3,ENST00000392132.2	chr2	217054947:217055057:217057361:217057458:217059641:217059709,	217057362	217057458	217057441	217057441	Nonsense_Mutation	G	A	p.W675*
LUAD	TCGA-97-A4M5-01	ANKRD44	ENST00000422886.1,ENST00000409153.1,ENST00000424317.1,ENST00000282272.8,ENST00000539527.1,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197943426:197943538:197946368:197946449:197948092:197948233,	197946369	197946449	197946417	197946417	Nonsense_Mutation	G	C	p.S472*
LUAD	TCGA-97-A4M5-01	RBBP7	ENST00000380084.4,ENST00000404022.1,ENST00000330735.3,ENST00000481586.1,ENST00000380087.2	chrX	16863993:16864061:16867366:16867424:16870168:16870188,	16867367	16867424	16867404	16867404	Nonsense_Mutation	G	C	p.S354*
LUAD	TCGA-97-A4M7-01	CCDC144A	ENST00000360495.5,ENST00000360524.8,ENST00000340621.5,ENST00000443444.2,ENST00000399273.1	chr17	16610782:16610856:16612109:16612949:16614992:16615129,	16612110	16612949	16612467	16612467	Nonsense_Mutation	G	T	p.E366*
LUAD	TCGA-97-A4M7-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000233957.1	chr2	103006518:103006677:103010928:103011087:103012990:103013346,	103010929	103011087	103010991	103010991	Nonsense_Mutation	G	T	p.E392*
LUAD	TCGA-99-7458-01	TEX14	ENST00000389934.3,ENST00000349033.5	chr17	56693535:56693666:56694898:56694980:56699010:56699147,	56694899	56694980	56694958	56694958	Nonsense_Mutation	G	A	p.R193*
LUAD	TCGA-99-7458-01	SUN1	ENST00000433212.1,ENST00000456758.2,ENST00000405266.1,ENST00000429178.1,ENST00000389574.3,ENST00000413171.2,ENST00000413514.2,ENST00000452783.2,ENST00000475971.1,ENST00000401592.1,ENST00000425407.2	chr7	905588:905704:908985:909153:912106:912199,	908986	909153	909028	909028	Nonsense_Mutation	C	T	p.Q864*
LUAD	TCGA-99-7458-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115371992:115372190:115373941:115374055:115374597:115374705,	115373942	115374055	115374047	115374047	Nonsense_Mutation	G	T	p.Y1073*
LUAD	TCGA-99-7458-01	DNAJC7	ENST00000588814.1,ENST00000316603.7,ENST00000426588.3,ENST00000457167.4,ENST00000586335.1	chr17	40134001:40134025:40134272:40134419:40135580:40135654,	40134273	40134419	40134324	40134324	Nonsense_Mutation	C	A	p.E394*
LUAD	TCGA-99-7458-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471763	56471763	Nonsense_Mutation	C	A	p.E2522*
LUAD	TCGA-99-7458-01	SLC35F3	ENST00000366618.3	chr1	234041274:234041504:234367162:234367487:234444846:234445066,	234367163	234367487	234367270	234367270	Nonsense_Mutation	C	T	p.Q131*
LUAD	TCGA-99-7458-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74283982:74284028:74285223:74285356:74286808:74286910,74284016:74284028:74285223:74285356:74285970:74286038,	74285224	74285356	74285336	74285336	Nonsense_Mutation	G	T	p.E589*
LUAD	TCGA-99-8025-01	SMARCD2	ENST00000584400.1,ENST00000323347.10,ENST00000225742.9,ENST00000448276.2	chr17	61912850:61912927:61914281:61914404:61914554:61914597,	61914282	61914404	61914380	61914380	Nonsense_Mutation	G	A	p.Q157*
LUAD	TCGA-99-8025-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394489	64394489	Nonsense_Mutation	C	G	p.S289*
LUAD	TCGA-99-8025-01	XYLT1	ENST00000261381.6	chr16	17195625:17202874:17211502:17211836:17221522:17221718,	17211503	17211836	17211518	17211518	Nonsense_Mutation	G	A	p.Q848*
LUAD	TCGA-99-8028-01	ADAM9	ENST00000487273.2,ENST00000481873.3,ENST00000379917.3,ENST00000468065.1	chr8	38884195:38884329:38899464:38899636:38911999:38912092,	38899465	38899636	38899496	38899496	Nonsense_Mutation	G	T	p.E388*
LUAD	TCGA-99-8028-01	CEP120	ENST00000306467.5,ENST00000508138.1,ENST00000508442.2,ENST00000513565.2,ENST00000328236.5,ENST00000395431.2,ENST00000306481.6	chr5	122726803:122727031:122728993:122729191:122734829:122734978,	122728994	122729191	122729125	122729125	Nonsense_Mutation	C	A	p.G227*
LUAD	TCGA-99-8028-01	NEBL	ENST00000377122.4	chr10	21120401:21120512:21124441:21124552:21129667:21129778,	21124442	21124552	21124531	21124531	Nonsense_Mutation	C	A	p.E454*
LUAD	TCGA-99-8028-01	RPS6KC1	ENST00000543470.1,ENST00000366959.3,ENST00000366960.3	chr1	213277795:213277911:213302869:213303232:213341200:213341316,213290658:213290752:213302869:213303232:213341200:213341316,	213302870	213303232	213303052	213303052	Nonsense_Mutation	G	T	p.E219*
LUAD	TCGA-99-8028-01	HAL	ENST00000261208.3,ENST00000538703.1,ENST00000546999.1,ENST00000548808.1,ENST00000541929.1,ENST00000544080.2	chr12	96370375:96370484:96371721:96371856:96374333:96374446,	96371722	96371856	96371728	96371728	Nonsense_Mutation	C	A	p.E550*
LUAD	TCGA-99-8032-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641192	36641192	Nonsense_Mutation	C	A	p.E343*
LUAD	TCGA-99-8032-01	LTBP1	ENST00000404525.1,ENST00000402934.1	chr2	33468728:33468851:33477743:33477911:33482350:33482578,33468728:33468851:33477743:33477911:33482509:33482578,	33477744	33477911	33477850	33477850	Nonsense_Mutation	C	A	p.C702*
LUAD	TCGA-99-8032-01	KIF21B	ENST00000461742.2,ENST00000332129.2,ENST00000422435.2,ENST00000360529.5	chr1	200967511:200967703:200968476:200968594:200969010:200969092,	200968477	200968594	200968555	200968555	Nonsense_Mutation	C	A	p.E603*
LUAD	TCGA-99-8032-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1653191	1653191	Nonsense_Mutation	G	T	p.Y787*
LUAD	TCGA-99-8032-01	MTR	ENST00000535889.1,ENST00000463959.1	chr1	236958981:236959037:236966727:236966942:236969443:236969533,	236966728	236966942	236966853	236966853	Nonsense_Mutation	C	T	p.Q54*
LUAD	TCGA-99-8032-01	LDHA	ENST00000396222.2,ENST00000460405.1,ENST00000542179.1,ENST00000543445.1,ENST00000227157.4,ENST00000537296.1,ENST00000540430.1,ENST00000422447.3,ENST00000379412.5	chr11	18418365:18418515:18422383:18422557:18424386:18424438,18420977:18421095:18422383:18422557:18424386:18424438,	18422384	18422557	18422549	18422549	Nonsense_Mutation	C	G	p.S137*
LUAD	TCGA-99-8032-01	POC5	ENST00000428202.2,ENST00000514838.2,ENST00000446329.2	chr5	74973598:74973775:74981031:74981309:74984836:74984990,	74981032	74981309	74981259	74981259	Nonsense_Mutation	C	A	p.G394*
LUAD	TCGA-99-8032-01	XPNPEP1	ENST00000430337.1,ENST00000508059.1,ENST00000488118.2,ENST00000505255.1,ENST00000502935.1,ENST00000369680.4,ENST00000506777.1,ENST00000443078.1,ENST00000322238.8,ENST00000369683.1,ENST00000403138.2,ENST00000460523.1	chr10	111643863:111643906:111646003:111646099:111647806:111647950,	111646004	111646099	111646061	111646061	Nonsense_Mutation	T	A	p.K188*
LUAD	TCGA-99-8032-01	CPXM2	ENST00000368854.3,ENST00000241305.3	chr10	125516728:125516868:125521387:125521685:125526488:125526668,	125521388	125521685	125521564	125521564	Nonsense_Mutation	C	T	p.W534*
LUAD	TCGA-99-8032-01	SLC38A7	ENST00000219320.4,ENST00000564010.1,ENST00000566598.1,ENST00000570101.1	chr16	58704016:58704071:58704948:58705148:58705999:58706147,	58704949	58705148	58705099	58705099	Nonsense_Mutation	C	A	p.E361*
LUAD	TCGA-99-8032-01	SPEG	ENST00000396698.1,ENST00000312358.7,ENST00000464989.1,ENST00000498378.1	chr2	220309766:220309883:220312695:220313993:220315857:220316001,	220312696	220313993	220312959	220312959	Nonsense_Mutation	C	A	p.S360*
LUAD	TCGA-99-8033-01	APOH	ENST00000205948.6	chr17	64208156:64208306:64210570:64210768:64212905:64213082,	64210571	64210768	64210622	64210622	Nonsense_Mutation	C	A	p.E311*
LUAD	TCGA-99-8033-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
LUAD	TCGA-99-8033-01	TGM7	ENST00000452443.2	chr15	43577011:43577150:43579477:43579655:43579738:43579867,	43579478	43579655	43579515	43579515	Nonsense_Mutation	G	T	p.Y276*
LUAD	TCGA-J2-8194-01	MMADHC	ENST00000428879.1,ENST00000303319.5	chr2	150426185:150426682:150427598:150427685:150432224:150432355,	150427599	150427685	150427649	150427649	Nonsense_Mutation	G	A	p.R216*
LUAD	TCGA-J2-8194-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36430423	36430423	Nonsense_Mutation	C	A	p.C32*
LUAD	TCGA-J2-A4AD-01	DHX32	ENST00000415732.1	chr10	127555697:127555752:127569111:127569640:127584786:127585005,	127569112	127569640	127569375	127569375	Nonsense_Mutation	C	A	p.E7*
LUAD	TCGA-J2-A4AD-01	CMAS	ENST00000538498.1,ENST00000229329.2,ENST00000534981.1	chr12	22208390:22208544:22211500:22211634:22213765:22213860,	22211501	22211634	22211632	22211632	Nonsense_Mutation	C	T	p.Q231*
LUAD	TCGA-J2-A4AD-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85647996	85647996	Nonsense_Mutation	G	A	p.Q777*
LUAD	TCGA-J2-A4AD-01	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31137626	31137626	Nonsense_Mutation	C	A	p.E521*
LUAD	TCGA-J2-A4AD-01	CEP164	ENST00000278935.3,ENST00000533675.1	chr11	117233119:117233254:117234144:117234222:117241795:117242182,	117234145	117234222	117234158	117234158	Nonsense_Mutation	C	G	p.S234*
LUAD	TCGA-J2-A4AD-01	SCML4	ENST00000459992.1,ENST00000440927.1	chr6	108070887:108071017:108076774:108076868:108145329:108145490,108070887:108071017:108076774:108076868:108093375:108093455,	108076775	108076868	108076835	108076835	Nonsense_Mutation	G	T	p.C3*
LUAD	TCGA-J2-A4AD-01	F13B	ENST00000367412.1	chr1	197030028:197030205:197030913:197031099:197031986:197032187,	197030914	197031099	197030945	197030945	Nonsense_Mutation	C	T	p.W140*
LUAD	TCGA-J2-A4AG-01	MAX	ENST00000358402.4,ENST00000556892.1,ENST00000358664.4	chr14	65543326:65543381:65544630:65544754:65560425:65560533,	65544631	65544754	65544712	65544712	Nonsense_Mutation	G	A	p.Q72*
LUAD	TCGA-L4-A4E5-01	SPAG17	ENST00000336338.5	chr1	118565926:118566086:118567860:118568039:118570896:118571017,	118567861	118568039	118568009	118568009	Nonsense_Mutation	C	T	p.W1254*
LUAD	TCGA-L4-A4E5-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102533	61102533	Nonsense_Mutation	G	T	p.G299*
LUAD	TCGA-L9-A443-01	APOO	ENST00000379226.4,ENST00000379220.3,ENST00000490078.1,ENST00000439528.1	chrX	23874418:23874499:23876758:23876850:23886709:23886770,	23876759	23876850	23876836	23876836	Nonsense_Mutation	T	A	p.K135*
LUAD	TCGA-L9-A443-01	QRSL1	ENST00000369044.1,ENST00000369046.4	chr6	107096899:107097076:107100083:107100259:107100341:107100457,	107100084	107100259	107100091	107100091	Nonsense_Mutation	G	T	p.G189*
LUAD	TCGA-L9-A444-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784414	54784414	Nonsense_Mutation	G	C	p.S698*
LUAD	TCGA-MN-A4N1-01	GTDC1	ENST00000344850.4,ENST00000392871.2,ENST00000491448.1,ENST00000542155.1,ENST00000409214.1,ENST00000241391.5,ENST00000392869.2,ENST00000437114.1,ENST00000392867.3,ENST00000409298.1	chr2	144899448:144899622:144903138:144903306:144966169:144966371,	144903139	144903306	144903179	144903179	Nonsense_Mutation	C	A	p.E103*
LUAD	TCGA-MN-A4N1-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000417477.2,ENST00000348476.3	chr14	58825849:58825934:58827618:58827760:58830887:58832018,	58827619	58827760	58827655	58827655	Nonsense_Mutation	G	T	p.E659*
LUAD	TCGA-MN-A4N1-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89133184:89133247:89133382:89133547:89135493:89135710,	89133383	89133547	89133421	89133421	Nonsense_Mutation	G	A	p.R301*
LUAD	TCGA-MN-A4N1-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186275545	186275545	Nonsense_Mutation	A	T	p.K232*
LUAD	TCGA-MN-A4N4-01	SLC6A12	ENST00000540094.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	309816:309949:310927:311015:311905:311948,	310928	311015	310986	310986	Nonsense_Mutation	C	A	p.G174*
LUAD	TCGA-MN-A4N4-01	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148926997:148927171:148927953:148928166:148930237:148930485,	148927954	148928166	148928104	148928104	Nonsense_Mutation	C	A	p.E153*
LUAD	TCGA-MN-A4N4-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174814685	174814685	Nonsense_Mutation	G	A	p.W50*
LUAD	TCGA-MN-A4N4-01	SLC38A11	ENST00000409058.1,ENST00000409662.1,ENST00000493887.1,ENST00000409149.3,ENST00000303735.4	chr2	165768167:165768258:165771621:165771783:165772412:165772483,	165771622	165771783	165771773	165771773	Nonsense_Mutation	G	T	p.C155*
LUAD	TCGA-MN-A4N4-01	RIMS2	ENST00000515551.1,ENST00000507740.1,ENST00000504942.2,ENST00000436393.2,ENST00000408894.2,ENST00000406091.3	chr8	104897525:104898451:104922361:104922429:104924280:104924400,	104922362	104922429	104922381	104922381	Nonsense_Mutation	G	A	p.W356*
LUAD	TCGA-MN-A4N4-01	C17orf58	ENST00000334461.7	chr17	65987245:65988219:65989016:65989351:65989539:65989640,	65989017	65989351	65989128	65989128	Nonsense_Mutation	A	T	p.Y45*
LUAD	TCGA-MN-A4N4-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557043	214557043	Nonsense_Mutation	C	A	p.E719*
LUAD	TCGA-MN-A4N4-01	EZH2	ENST00000460911.1,ENST00000350995.2,ENST00000320356.2,ENST00000536783.1,ENST00000541220.1,ENST00000483012.1,ENST00000483967.1,ENST00000498186.1	chr7	148543588:148543690:148544273:148544397:148581255:148581337,	148544274	148544397	148544312	148544312	Nonsense_Mutation	T	A	p.R27*
LUAD	TCGA-MN-A4N4-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000395187.2,ENST00000427635.2,ENST00000463478.1,ENST00000412272.2	chr10	69792575:69792626:69793721:69793943:69797849:69797926,	69793722	69793943	69793923	69793923	Nonsense_Mutation	C	A	p.G162*
LUAD	TCGA-MN-A4N4-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577288	14577288	Nonsense_Mutation	G	T	p.G155*
LUAD	TCGA-MN-A4N4-01	PPARG	ENST00000397023.1,ENST00000309576.6,ENST00000397015.2,ENST00000397010.2,ENST00000397026.2,ENST00000287820.6,ENST00000397012.2	chr3	12447380:12447580:12458202:12458653:12475396:12475715,	12458203	12458653	12458242	12458242	Nonsense_Mutation	G	T	p.E265*
LUAD	TCGA-MN-A4N4-01	PDLIM3	ENST00000505886.1,ENST00000284771.6	chr4	186425698:186425740:186427675:186427806:186434710:186438871,186425698:186425740:186427675:186427806:186435856:186436044,	186427676	186427806	186427700	186427700	Nonsense_Mutation	G	A	p.Q257*
LUAD	TCGA-MN-A4N4-01	INSR	ENST00000302850.5	chr19	7142826:7143101:7150507:7150543:7152736:7152938,	7150508	7150543	7150532	7150532	Nonsense_Mutation	G	C	p.S748*
LUAD	TCGA-MN-A4N4-01	CCT2	ENST00000299300.6,ENST00000544368.2,ENST00000550010.1,ENST00000543146.2	chr12	69981929:69982042:69983264:69983467:69985838:69985939,	69983265	69983467	69983324	69983324	Nonsense_Mutation	C	G	p.S122*
LUAD	TCGA-MN-A4N5-01	SV2A	ENST00000369145.1,ENST00000369146.3	chr1	149881352:149881442:149882121:149882255:149882377:149882529,	149882122	149882255	149882227	149882227	Nonsense_Mutation	G	C	p.Y328*
LUAD	TCGA-MN-A4N5-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19468000	19468000	Nonsense_Mutation	C	A	p.E2777*
LUAD	TCGA-MN-A4N5-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574000	7574000	Nonsense_Mutation	C	A	p.E343*
LUAD	TCGA-MN-A4N5-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5755511:5755660:5757990:5758089:5785278:5785491,	5757991	5758089	5758009	5758009	Nonsense_Mutation	G	T	p.E495*
LUAD	TCGA-MN-A4N5-01	SULT1E1	ENST00000226444.3	chr4	70713415:70713510:70715154:70715281:70719934:70720032,	70715155	70715281	70715267	70715267	Nonsense_Mutation	G	T	p.C128*
LUAD	TCGA-MN-A4N5-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100393	168100393	Nonsense_Mutation	G	T	p.E831*
LUAD	TCGA-MN-A4N5-01	GPA33	ENST00000367868.3,ENST00000527955.1	chr1	167024966:167025086:167032818:167032974:167038158:167038375,	167032819	167032974	167032843	167032843	Nonsense_Mutation	G	A	p.Q183*
LUAD	TCGA-MN-A4N5-01	TENM3	ENST00000511685.1,ENST00000406950.2	chr4	183696070:183696306:183710245:183710542:183713426:183715038,	183710246	183710542	183710441	183710441	Nonsense_Mutation	C	T	p.R1834*
LUAD	TCGA-MN-A4N5-01	RSPRY1	ENST00000537866.1,ENST00000564530.1,ENST00000394420.4	chr16	57255183:57255327:57261253:57261365:57264622:57264725,	57261254	57261365	57261318	57261318	Nonsense_Mutation	G	A	p.W409*
LUAD	TCGA-MN-A4N5-01	WNT10A	ENST00000258411.3	chr2	219746965:219747145:219754705:219755085:219757495:219757868,	219754706	219755085	219754831	219754831	Nonsense_Mutation	G	T	p.E168*
LUAD	TCGA-MP-A4SV-01	DNM1L	ENST00000381000.4,ENST00000414834.2,ENST00000546649.1,ENST00000358214.5,ENST00000553257.1	chr12	32854348:32854496:32858758:32858797:32860300:32860347,	32858759	32858797	32858780	32858780	Nonsense_Mutation	C	G	p.S91*
LUAD	TCGA-MP-A4SV-01	ILF3	ENST00000591649.1,ENST00000590261.1,ENST00000318511.3,ENST00000449870.1,ENST00000587928.1,ENST00000588657.1	chr19	10794592:10794646:10799225:10799354:10799854:10799988,10798275:10798384:10799225:10799354:10799854:10799988,	10799226	10799354	10799240	10799240	Nonsense_Mutation	G	T	p.G817*
LUAD	TCGA-MP-A4SV-01	WDR60	ENST00000467220.1,ENST00000407559.3	chr7	158711430:158711560:158715067:158715240:158716261:158716424,	158715068	158715240	158715070	158715070	Nonsense_Mutation	C	T	p.R642*
LUAD	TCGA-MP-A4SW-01	DNAJA1	ENST00000330899.4	chr9	33026479:33026614:33026810:33026988:33029882:33029987,	33026811	33026988	33026883	33026883	Nonsense_Mutation	G	T	p.E69*
LUAD	TCGA-MP-A4SY-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300359	18300359	Nonsense_Mutation	C	A	p.E1690*
LUAD	TCGA-MP-A4SY-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125821	47125821	Nonsense_Mutation	C	A	p.E1817*
LUAD	TCGA-MP-A4T2-01	FOXJ2	ENST00000428177.2,ENST00000162391.3	chr12	8195253:8195328:8196296:8196365:8196546:8196687,	8196297	8196365	8196336	8196336	Nonsense_Mutation	C	T	p.R150*
LUAD	TCGA-MP-A4T2-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190531771	190531771	Nonsense_Mutation	G	T	p.E305*
LUAD	TCGA-MP-A4T4-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89133184:89133247:89133382:89133547:89135493:89135710,	89133383	89133547	89133529	89133529	Nonsense_Mutation	C	A	p.G265*
LUAD	TCGA-MP-A4T4-01	CTTN	ENST00000376561.3,ENST00000301843.8,ENST00000529736.1,ENST00000538675.1,ENST00000393747.2,ENST00000346329.3	chr11	70277296:70277386:70279206:70279384:70279752:70279824,	70279207	70279384	70279240	70279240	Nonsense_Mutation	A	T	p.R434*
LUAD	TCGA-MP-A4T6-01	IFT172	ENST00000507184.1,ENST00000260570.3,ENST00000443889.1	chr2	27676496:27676606:27676848:27677029:27677220:27677285,	27676849	27677029	27676911	27676911	Nonsense_Mutation	G	A	p.Q1217*
LUAD	TCGA-MP-A4T6-01	PLEKHA7	ENST00000525581.1,ENST00000531079.1,ENST00000355661.3,ENST00000525049.1,ENST00000530489.1,ENST00000525781.1,ENST00000531066.1,ENST00000448080.2	chr11	16822571:16822622:16823214:16823364:16824518:16824599,	16823215	16823364	16823301	16823301	Nonsense_Mutation	G	A	p.Q741*
LUAD	TCGA-MP-A4T8-01	CDH11	ENST00000268603.4,ENST00000566827.1,ENST00000394156.3	chr16	65015950:65016204:65022059:65022247:65025670:65025838,	65022060	65022247	65022083	65022083	Nonsense_Mutation	C	A	p.E326*
LUAD	TCGA-MP-A4TA-01	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58001202	58001202	Nonsense_Mutation	G	T	p.E186*
LUAD	TCGA-MP-A4TA-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58001202	58001202	Nonsense_Mutation	G	T	p.E186*
LUAD	TCGA-MP-A4TA-01	TXLNA	ENST00000373609.1,ENST00000373610.3	chr1	32646842:32647178:32650125:32650217:32653554:32653725,	32650126	32650217	32650179	32650179	Nonsense_Mutation	G	T	p.E187*
LUAD	TCGA-MP-A4TA-01	ATP6V0A1	ENST00000264649.6,ENST00000393829.2,ENST00000343619.4,ENST00000544137.1,ENST00000537728.1,ENST00000546249.1,ENST00000585525.1	chr17	40650941:40651060:40652724:40652941:40653214:40653322,	40652725	40652941	40652822	40652822	Nonsense_Mutation	A	T	p.K593*
LUAD	TCGA-MP-A4TA-01	AZIN1	ENST00000347770.4,ENST00000337198.5,ENST00000518697.1	chr8	103840774:103840906:103841499:103841714:103842048:103842161,	103841500	103841714	103841564	103841564	Nonsense_Mutation	C	A	p.E391*
LUAD	TCGA-MP-A4TA-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000514331.1,ENST00000351898.6	chr4	72120936:72121116:72205086:72205222:72215628:72215789,	72205087	72205222	72205110	72205110	Nonsense_Mutation	C	T	p.R49*
LUAD	TCGA-MP-A4TA-01	SEC31A	ENST00000443462.2,ENST00000513858.1,ENST00000432794.1,ENST00000348405.4,ENST00000311785.7,ENST00000500777.2,ENST00000509142.1,ENST00000514326.1,ENST00000326950.5,ENST00000513323.1,ENST00000505984.1,ENST00000505472.1,ENST00000448323.1,ENST00000508502.1,ENST00000355196.2,ENST00000436790.2,ENST00000508479.1,ENST00000395310.2	chr4	83796937:83796975:83799882:83800081:83801951:83802075,	83799883	83800081	83799972	83799972	Nonsense_Mutation	T	A	p.K105*
LUAD	TCGA-MP-A4TA-01	SEC31A	ENST00000507340.1	chr4	83796937:83796975:83799882:83800071:83801951:83802075,	83799883	83800071	83799972	83799972	Nonsense_Mutation	T	A	p.K105*
LUAD	TCGA-MP-A4TA-01	WWC1	ENST00000521089.1,ENST00000523043.1	chr5	167719250:167719276:167798428:167798538:167812215:167812331,	167798429	167798538	167798481	167798481	Nonsense_Mutation	G	T	p.G58*
LUAD	TCGA-MP-A4TC-01	ARSG	ENST00000448504.2,ENST00000452479.2	chr17	66339744:66339932:66343265:66343313:66347715:66347827,	66343266	66343313	66343280	66343280	Nonsense_Mutation	G	T	p.G141*
LUAD	TCGA-MP-A4TC-01	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000433979.1	chr12	18699256:18699366:18715636:18715826:18716310:18716432,	18715637	18715826	18715656	18715656	Nonsense_Mutation	G	T	p.E1163*
LUAD	TCGA-MP-A4TC-01	FUNDC1	ENST00000378045.4,ENST00000483115.1	chrX	44383017:44383521:44386482:44386611:44397712:44397788,	44386483	44386611	44386527	44386527	Nonsense_Mutation	G	A	p.R116*
LUAD	TCGA-MP-A4TC-01	RALGAPB	ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3,ENST00000537204.1	chr20	37121572:37121775:37125995:37126159:37128089:37128276,	37125996	37126159	37126103	37126103	Nonsense_Mutation	T	G	p.L166*
LUAD	TCGA-MP-A4TC-01	PLEKHH2	ENST00000490038.1	chr2	43980757:43980899:43986038:43986168:43989442:43989529,	43986039	43986168	43986102	43986102	Nonsense_Mutation	T	A	p.C1335*
LUAD	TCGA-MP-A4TD-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515086	186515086	Nonsense_Mutation	G	A	p.Q1030*
LUAD	TCGA-MP-A4TD-01	LRP1B	ENST00000389484.3	chr2	141130576:141130706:141135748:141135855:141143461:141143578,	141135749	141135855	141135788	141135788	Nonsense_Mutation	C	T	p.W3533*
LUAD	TCGA-MP-A4TF-01	KRT72	ENST00000537672.2,ENST00000398066.3,ENST00000550829.1,ENST00000293745.2	chr12	52981414:52981635:52984619:52984745:52985247:52985412,	52984620	52984745	52984643	52984643	Nonsense_Mutation	C	A	p.E356*
LUAD	TCGA-MP-A4TF-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742657	42742657	Nonsense_Mutation	G	A	p.Q582*
LUAD	TCGA-MP-A4TF-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371125	240371125	Nonsense_Mutation	G	T	p.G1005*
LUAD	TCGA-MP-A4TF-01	NDE1	ENST00000396354.1,ENST00000573203.1	chr16	15744113:15744151:15758592:15758718:15761142:15761296,	15758593	15758718	15758648	15758648	Nonsense_Mutation	G	T	p.G5*
LUAD	TCGA-MP-A4TF-01	HERC2	ENST00000261609.7	chr15	28386884:28386992:28387383:28387539:28387972:28388098,	28387384	28387539	28387465	28387465	Nonsense_Mutation	C	T	p.W3873*
LUAD	TCGA-MP-A4TF-01	GHRH	ENST00000373614.2,ENST00000237527.3	chr20	35879488:35879634:35882612:35882732:35884796:35884901,	35882613	35882732	35882716	35882716	Nonsense_Mutation	G	A	p.R69*
LUAD	TCGA-MP-A4TH-01	TARBP1	ENST00000481183.1,ENST00000040877.1	chr1	234536926:234537008:234541648:234541845:234546190:234546277,	234541649	234541845	234541755	234541755	Nonsense_Mutation	T	A	p.K1295*
LUAD	TCGA-MP-A4TI-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28116299:28116404:28117008:28117068:28171272:28171400,	28117009	28117068	28117044	28117044	Nonsense_Mutation	C	A	p.E702*
LUAD	TCGA-MP-A4TI-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670643	186670643	Nonsense_Mutation	C	G	p.S5626*
LUAD	TCGA-MP-A4TI-01	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36251414:36251601:36253748:36253891:36255571:36255692,	36253749	36253891	36253826	36253826	Nonsense_Mutation	G	A	p.Q364*
LUAD	TCGA-MP-A4TI-01	ANKLE2	ENST00000538766.1,ENST00000539605.1,ENST00000357997.5	chr12	133304617:133304749:133306264:133306856:133310970:133311046,	133306265	133306856	133306800	133306800	Nonsense_Mutation	C	A	p.E588*
LUAD	TCGA-MP-A4TI-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728917	50728917	Nonsense_Mutation	C	A	p.E33*
LUAD	TCGA-MP-A4TK-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764582	138764582	Nonsense_Mutation	G	A	p.Q369*
LUAD	TCGA-MP-A4TK-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764582	138764582	Nonsense_Mutation	G	A	p.Q369*
LUAD	TCGA-MP-A4TK-01	RIBC1	ENST00000375327.3	chrX	53456801:53456920:53457343:53457738:53457854:53458059,	53457344	53457738	53457659	53457659	Nonsense_Mutation	C	T	p.Q327*
LUAD	TCGA-MP-A4TK-01	GAB2	ENST00000361507.4	chr11	77961402:77961446:77991646:77991947:78128691:78128817,	77991647	77991947	77991884	77991884	Nonsense_Mutation	C	A	p.E47*
LUAD	TCGA-MP-A4TK-01	IL32	ENST00000549213.1,ENST00000551122.1,ENST00000396887.3,ENST00000528652.2	chr16	3118180:3118240:3118990:3119110:3119281:3119413,	3118991	3119110	3119036	3119036	Nonsense_Mutation	C	T	p.R83*
LUAD	TCGA-NJ-A4YF-01	GSR	ENST00000541648.1	chr8	30546678:30546836:30550485:30550572:30553896:30553973,30541604:30541716:30550485:30550572:30553896:30553990,	30550486	30550572	30550566	30550566	Nonsense_Mutation	T	A	p.R268*
LUAD	TCGA-NJ-A4YF-01	RHCE	ENST00000527187.1,ENST00000243186.6,ENST00000349438.4,ENST00000374352.2,ENST00000294413.7,ENST00000413854.1,ENST00000349320.3	chr1	25715466:25715604:25717239:25717406:25718484:25718632,	25717240	25717406	25717280	25717280	Nonsense_Mutation	G	T	p.S238*
LUAD	TCGA-NJ-A4YF-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000589114.1,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34182636:34182731:34191914:34192058:34205473:34205712,	34191915	34192058	34191969	34191969	Nonsense_Mutation	G	T	p.E290*
LUAD	TCGA-NJ-A4YF-01	ZRANB2	ENST00000370920.3,ENST00000254821.6	chr1	71537803:71537938:71538154:71538231:71542477:71542560,	71538155	71538231	71538211	71538211	Nonsense_Mutation	C	A	p.E108*
LUAD	TCGA-NJ-A4YF-01	COL16A1	ENST00000271069.6,ENST00000373668.3,ENST00000373672.3,ENST00000529928.1,ENST00000373667.4	chr1	32154461:32154572:32154650:32154686:32155341:32155452,	32154651	32154686	32154671	32154671	Nonsense_Mutation	G	A	p.Q546*
LUAD	TCGA-NJ-A4YF-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730441	37730441	Nonsense_Mutation	C	A	p.G627*
LUAD	TCGA-NJ-A4YF-01	FNDC3B	ENST00000415807.2,ENST00000490832.1,ENST00000416957.1,ENST00000336824.4	chr3	172064116:172064230:172065001:172065151:172070592:172070668,	172065002	172065151	172065050	172065050	Nonsense_Mutation	G	T	p.G805*
LUAD	TCGA-NJ-A4YF-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816596	82816596	Nonsense_Mutation	C	G	p.S824*
LUAD	TCGA-NJ-A4YF-01	PHF2	ENST00000375376.4	chr9	96338908:96339153:96392251:96392337:96398692:96398751,	96392252	96392337	96392313	96392313	Nonsense_Mutation	G	T	p.E54*
LUAD	TCGA-NJ-A4YF-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198*
LUAD	TCGA-NJ-A4YF-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752726	36752726	Nonsense_Mutation	C	T	p.Q299*
LUAD	TCGA-NJ-A4YF-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204411653:204411761:204412544:204412725:204413195:204413290,	204412545	204412725	204412697	204412697	Nonsense_Mutation	G	A	p.Q966*
LUAD	TCGA-NJ-A4YG-01	WASF3	ENST00000361042.4	chr13	27246008:27246126:27254171:27254338:27255190:27255457,	27254172	27254338	27254301	27254301	Nonsense_Mutation	C	T	p.Q224*
LUAD	TCGA-NJ-A4YG-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985251	36985251	Nonsense_Mutation	A	T	p.R657*
LUAD	TCGA-NJ-A4YI-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210542	37210542	Nonsense_Mutation	G	T	p.E275*
LUAD	TCGA-NJ-A4YI-01	DSC2	ENST00000251081.6,ENST00000280904.6	chr18	28660061:28660318:28662203:28662389:28662891:28663026,	28662204	28662389	28662387	28662387	Nonsense_Mutation	A	T	p.Y360*
LUAD	TCGA-NJ-A4YI-01	CACNA1B	ENST00000277551.2,ENST00000371357.1,ENST00000371363.1,ENST00000371372.1,ENST00000277549.5,ENST00000371355.4	chr9	140952500:140952702:140953020:140953185:140953530:140953641,	140953021	140953185	140953137	140953137	Nonsense_Mutation	C	A	p.Y671*
LUAD	TCGA-NJ-A4YI-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577231	14577231	Nonsense_Mutation	G	T	p.E136*
LUAD	TCGA-NJ-A4YI-01	FMNL3	ENST00000293590.5,ENST00000352151.5,ENST00000550488.1,ENST00000335154.5	chr12	50045164:50045233:50045715:50045995:50047008:50047110,	50045716	50045995	50045884	50045884	Nonsense_Mutation	C	A	p.E479*
LUAD	TCGA-NJ-A4YI-01	SNTG2	ENST00000407292.1,ENST00000308624.5	chr2	1243509:1243548:1251098:1251215:1263141:1263213,	1251099	1251215	1251197	1251197	Nonsense_Mutation	C	A	p.Y329*
LUAD	TCGA-NJ-A4YP-01	TLE1	ENST00000376463.1,ENST00000376472.1,ENST00000376499.3	chr9	84249011:84249216:84267128:84267203:84268888:84268951,	84267129	84267203	84267185	84267185	Nonsense_Mutation	G	A	p.Q106*
LUAD	TCGA-NJ-A4YP-01	TLE1	ENST00000418319.1	chr9	84249011:84249216:84267098:84267203:84268888:84268951,	84267099	84267203	84267185	84267185	Nonsense_Mutation	G	A	p.Q106*
LUAD	TCGA-NJ-A4YP-01	CUTA	ENST00000607266.1,ENST00000482684.1,ENST00000374496.3,ENST00000462802.1,ENST00000465956.1,ENST00000440279.3,ENST00000374500.5,ENST00000494751.1,ENST00000488034.1	chr6	33384525:33384553:33384873:33384919:33385027:33385087,33384696:33384746:33384873:33384919:33385027:33385087,	33384874	33384919	33384897	33384897	Nonsense_Mutation	C	A	p.E133*
LUAD	TCGA-NJ-A4YP-01	MYH11	ENST00000570785.1,ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15847250:15847365:15850197:15850371:15851683:15851770,	15850198	15850371	15850335	15850335	Nonsense_Mutation	C	A	p.E538*
LUAD	TCGA-NJ-A4YP-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24910189	24910189	Nonsense_Mutation	G	T	p.S212*
LUAD	TCGA-NJ-A4YP-01	FAF2	ENST00000261942.6	chr5	175925914:175926086:175927003:175927147:175933768:175934514,	175927004	175927147	175927109	175927109	Nonsense_Mutation	C	T	p.R373*
LUAD	TCGA-NJ-A4YP-01	WSB1	ENST00000581440.1,ENST00000262394.2,ENST00000427287.2,ENST00000581185.1,ENST00000467843.2	chr17	25628906:25628982:25630392:25630661:25631805:25631929,	25630393	25630661	25630601	25630601	Nonsense_Mutation	C	T	p.Q140*
LUAD	TCGA-NJ-A4YP-01	LAMA3	ENST00000586751.1,ENST00000313654.9,ENST00000269217.6,ENST00000588770.1	chr18	21478917:21479029:21479251:21479419:21481090:21481287,	21479252	21479419	21479329	21479329	Nonsense_Mutation	G	T	p.E1972*
LUAD	TCGA-NJ-A4YP-01	CASP1	ENST00000527979.1,ENST00000393136.4,ENST00000525825.1,ENST00000593315.1	chr11	104901056:104901230:104901891:104902007:104904934:104905085,	104901892	104902007	104901911	104901911	Nonsense_Mutation	C	T	p.W145*
LUAD	TCGA-NJ-A4YP-01	YEATS2	ENST00000305135.5	chr3	183442206:183442319:183446477:183446639:183454505:183454617,	183446478	183446639	183446516	183446516	Nonsense_Mutation	C	G	p.S230*
LUAD	TCGA-NJ-A4YP-01	NR1H2	ENST00000542413.1,ENST00000593532.1	chr19	50881039:50881127:50881405:50881569:50881778:50881935,	50881406	50881569	50881426	50881426	Nonsense_Mutation	G	T	p.E68*
LUAD	TCGA-NJ-A4YP-01	NR1H2	ENST00000598168.1,ENST00000597130.1,ENST00000597157.1,ENST00000253727.5,ENST00000599105.1,ENST00000593926.1	chr19	50881039:50881127:50881405:50881696:50881778:50881935,	50881406	50881696	50881426	50881426	Nonsense_Mutation	G	T	p.E68*
LUAD	TCGA-NJ-A4YP-01	CCT6A	ENST00000540286.1,ENST00000335503.3,ENST00000275603.4	chr7	56126312:56126395:56127236:56127333:56127961:56128109,	56127237	56127333	56127301	56127301	Nonsense_Mutation	G	T	p.G345*
LUAD	TCGA-NJ-A4YP-01	LCK	ENST00000333070.4,ENST00000373557.2,ENST00000495610.2,ENST00000469765.1,ENST00000373562.3,ENST00000336890.5	chr1	32740337:32740419:32740593:32740684:32740921:32741020,	32740594	32740684	32740623	32740623	Nonsense_Mutation	G	T	p.E73*
LUAD	TCGA-NJ-A4YQ-01	SCARA3	ENST00000301904.3	chr8	27514298:27514397:27516012:27517056:27528416:27530537,	27516013	27517056	27516099	27516099	Nonsense_Mutation	G	T	p.G138*
LUAD	TCGA-NJ-A4YQ-01	FMN1	ENST00000559047.1	chr15	33300214:33300276:33357157:33357275:33380999:33381175,	33357158	33357275	33357257	33357257	Nonsense_Mutation	C	A	p.E465*
LUAD	TCGA-NJ-A4YQ-01	CTSE	ENST00000361052.3,ENST00000358184.2	chr1	206327473:206327596:206328718:206328860:206328961:206329037,	206328719	206328860	206328753	206328753	Nonsense_Mutation	G	T	p.E279*
LUAD	TCGA-NJ-A4YQ-01	ACE	ENST00000290866.4,ENST00000290863.6,ENST00000584865.1,ENST00000490216.2,ENST00000428043.1,ENST00000413513.3,ENST00000582761.1,ENST00000579314.1	chr17	61566008:61566152:61566301:61566493:61568314:61568412,	61566302	61566493	61566417	61566417	Nonsense_Mutation	C	A	p.Y281*
LUAD	TCGA-NJ-A4YQ-01	TMPRSS11A	ENST00000513536.1	chr4	68797710:68797778:68810236:68810313:68812167:68812282,	68810237	68810313	68810257	68810257	Nonsense_Mutation	G	A	p.R77*
LUAD	TCGA-NJ-A4YQ-01	TMPRSS11A	ENST00000334830.7	chr4	68797710:68797778:68810227:68810355:68812167:68812282,	68810228	68810355	68810257	68810257	Nonsense_Mutation	G	A	p.R77*
LUAD	TCGA-NJ-A4YQ-01	TMPRSS11A	ENST00000508048.1,ENST00000396188.2	chr4	68797710:68797778:68810236:68810355:68812167:68812282,	68810237	68810355	68810257	68810257	Nonsense_Mutation	G	A	p.R77*
LUAD	TCGA-NJ-A4YQ-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107955117	107955117	Nonsense_Mutation	G	T	p.E357*
LUAD	TCGA-NJ-A4YQ-01	EDARADD	ENST00000334232.4,ENST00000439430.1,ENST00000359362.5	chr1	236577559:236577599:236590691:236590750:236631530:236631576,	236590692	236590750	236590748	236590748	Nonsense_Mutation	C	T	p.Q63*
LUAD	TCGA-NJ-A4YQ-01	N4BP1	ENST00000262384.3	chr16	48577074:48577172:48580057:48580165:48581917:48582025,	48580058	48580165	48580110	48580110	Nonsense_Mutation	C	A	p.G761*
LUAD	TCGA-NJ-A4YQ-01	GPCPD1	ENST00000418646.1,ENST00000379019.4,ENST00000481038.1	chr20	5527986:5528496:5538590:5538751:5539329:5539465,	5538591	5538751	5538643	5538643	Nonsense_Mutation	C	A	p.E593*
LUAD	TCGA-NJ-A4YQ-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82817222	82817222	Nonsense_Mutation	G	T	p.E1033*
LUAD	TCGA-NJ-A55O-01	ZNF566	ENST00000460937.1,ENST00000452939.1,ENST00000427002.1,ENST00000454319.1	chr19	36964233:36964360:36967450:36967518:36980375:36980408,36964233:36964360:36967450:36967518:36980387:36980420,	36967451	36967518	36967453	36967453	Nonsense_Mutation	G	A	p.Q3*
LUAD	TCGA-NJ-A55O-01	SACM1L	ENST00000455997.1	chr3	45773544:45773643:45776737:45776865:45779074:45779144,	45776738	45776865	45776857	45776857	Nonsense_Mutation	C	T	p.Q411*
LUAD	TCGA-NJ-A55O-01	SACM1L	ENST00000389061.5,ENST00000541314.1,ENST00000433336.1,ENST00000441228.1,ENST00000418611.1	chr3	45773544:45773643:45776726:45776865:45779074:45779144,	45776727	45776865	45776857	45776857	Nonsense_Mutation	C	T	p.Q411*
LUAD	TCGA-NJ-A55R-01	BMP7	ENST00000395863.3,ENST00000433911.1,ENST00000450594.2,ENST00000460817.1	chr20	55749986:55750063:55758777:55758975:55777530:55777679,	55758778	55758975	55758925	55758925	Nonsense_Mutation	G	A	p.Q271*
LUAD	TCGA-NJ-A55R-01	KLK6	ENST00000391808.1,ENST00000594641.1,ENST00000376851.3,ENST00000310157.2,ENST00000599690.1	chr19	51464999:51465136:51466557:51466805:51470424:51470581,	51466558	51466805	51466621	51466621	Nonsense_Mutation	C	A	p.E128*
LUAD	TCGA-NJ-A55R-01	DNAH9	ENST00000262442.4,ENST00000454412.2	chr17	11584039:11584206:11592882:11593753:11597184:11597315,	11592883	11593753	11593217	11593217	Nonsense_Mutation	G	T	p.E1360*
LUAD	TCGA-NJ-A55R-01	EPB41L3	ENST00000542146.1,ENST00000579271.1	chr18	5397396:5397425:5398019:5398142:5400967:5401042,5397396:5397425:5398019:5398142:5406775:5406967,5397396:5397425:5398019:5398142:5400495:5400594,	5398020	5398142	5398034	5398034	Nonsense_Mutation	G	A	p.Q820*
LUAD	TCGA-O1-A52J-01	ZNF75D	ENST00000370766.3	chrX	134424934:134425061:134425397:134425489:134426206:134426399,	134425398	134425489	134425457	134425457	Nonsense_Mutation	C	A	p.E213*
LUAD	TCGA-O1-A52J-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
LUAD	TCGA-O1-A52J-01	EPG5	ENST00000587974.1,ENST00000282041.5	chr18	43510641:43510796:43514774:43514932:43519565:43519721,	43514775	43514932	43514841	43514841	Nonsense_Mutation	C	A	p.E731*
LUAD	TCGA-O1-A52J-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65418719:65418870:65420381:65420594:65423205:65423419,	65420382	65420594	65420513	65420513	Nonsense_Mutation	C	T	p.Q720*
LUAD	TCGA-05-4249-01	TSSK4	ENST00000287913.6,ENST00000556621.1	chr14	24675714:24675929:24676351:24676715:24677169:24677454,	24676352	24676715	24676508	24676508	Nonsense_Mutation	T	A	p.C199*
LUAD	TCGA-05-4382-01	SLC11A2	ENST00000262052.5,ENST00000547688.1,ENST00000262051.7,ENST00000541174.2,ENST00000545993.2,ENST00000394904.3,ENST00000546636.1,ENST00000547198.1,ENST00000550061.1,ENST00000546743.1	chr12	51389466:51389570:51390599:51390755:51392956:51393024,	51390600	51390755	51390650	51390650	Nonsense_Mutation	C	A	p.G261*
LUAD	TCGA-05-4382-01	TRPM1	ENST00000558768.1	chr15	31354781:31354905:31355338:31355495:31358278:31358450,	31355339	31355495	31355409	31355409	Nonsense_Mutation	C	A	p.E271*
LUAD	TCGA-05-4382-01	TRPM1	ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31354781:31354905:31355320:31355495:31358278:31358450,	31355321	31355495	31355409	31355409	Nonsense_Mutation	C	A	p.E271*
LUAD	TCGA-05-4382-01	TRPM1	ENST00000560658.1,ENST00000560801.1	chr15	31354781:31354905:31355290:31355495:31358278:31358450,	31355291	31355495	31355409	31355409	Nonsense_Mutation	C	A	p.E271*
LUAD	TCGA-05-4382-01	MBP	ENST00000581878.1,ENST00000579129.1,ENST00000397860.3,ENST00000580402.1,ENST00000397863.1,ENST00000355994.2,ENST00000490754.1	chr18	74729074:74729224:74778253:74778341:74817166:74817217,	74778254	74778341	74778254	74778254	Nonsense_Mutation	C	A	p.G47*
LUAD	TCGA-05-4382-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114279550	114279551	Nonsense_Mutation	CC	AA	p.S3259*
LUAD	TCGA-05-4382-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000380550.3,ENST00000340096.6	chrX	13780462:13780563:13785245:13785403:13786172:13786343,13781869:13781974:13785245:13785403:13786172:13786343,	13785246	13785403	13785314	13785314	Nonsense_Mutation	C	T	p.R890*
LUAD	TCGA-05-4389-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448829	155448829	Nonsense_Mutation	G	A	p.Q1278*
LUAD	TCGA-05-4390-01	LUZP2	ENST00000336930.6,ENST00000533227.1	chr11	24784791:24784854:24927536:24927599:24936021:24936084,	24927537	24927599	24927594	24927594	Nonsense_Mutation	G	T	p.E152*
LUAD	TCGA-05-4390-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000422669.1,ENST00000272273.5,ENST00000354476.3,ENST00000418533.2	chr2	33572433:33572577:33585663:33585846:33586495:33586582,	33585664	33585846	33585790	33585790	Nonsense_Mutation	C	A	p.S1377*
LUAD	TCGA-05-4390-01	LTBP1	ENST00000402934.1	chr2	33572433:33572577:33585669:33585846:33586495:33586582,	33585670	33585846	33585790	33585790	Nonsense_Mutation	C	A	p.S1377*
LUAD	TCGA-05-4395-01	MAP4	ENST00000426837.2,ENST00000360240.6,ENST00000395734.3	chr3	47956306:47956429:47957440:47958664:47960208:47960241,	47957441	47958664	47957470	47957470	Nonsense_Mutation	G	C	p.S616*
LUAD	TCGA-05-4395-01	IDUA	ENST00000453894.1,ENST00000247933.4,ENST00000514224.1	chr4	997216:997258:997336:997413:997799:997900,	997337	997413	997367	997367	Nonsense_Mutation	C	T	p.Q561*
LUAD	TCGA-05-4395-01	IDUA	ENST00000514698.1	chr4	997216:997258:997336:997417:997799:997900,	997337	997417	997367	997367	Nonsense_Mutation	C	T	p.Q561*
LUAD	TCGA-05-4396-01	RNF168	ENST00000318037.3,ENST00000437070.1	chr3	196202101:196202183:196210640:196210762:196214269:196214449,	196210641	196210762	196210747	196210748	Nonsense_Mutation	CC	AA	p.191_192EG>D*
LUAD	TCGA-05-4396-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000514127.1,ENST00000513888.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6600142:6600345:6602573:6602613:6604250:6604291,	6602574	6602613	6602608	6602609	Nonsense_Mutation	CC	AA	p.654_655KG>N*
LUAD	TCGA-05-4396-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53227671:53227819:53227945:53228070:53228158:53228340,	53227946	53228070	53227964	53227964	Nonsense_Mutation	C	A	p.E784*
LUAD	TCGA-05-4398-01	KIF2C	ENST00000372222.3,ENST00000372224.4,ENST00000372217.1,ENST00000372218.4	chr1	45228216:45228330:45232497:45232621:45232768:45232880,	45232498	45232621	45232525	45232525	Nonsense_Mutation	G	T	p.E667*
LUAD	TCGA-05-4398-01	PIP5K1A	ENST00000368888.4,ENST00000349792.5,ENST00000409426.1,ENST00000368890.4,ENST00000441902.2	chr1	151204727:151204841:151205026:151205179:151206672:151206843,	151205027	151205179	151205138	151205138	Nonsense_Mutation	G	T	p.E200*
LUAD	TCGA-05-4398-01	CD84	ENST00000368051.3,ENST00000360056.3,ENST00000368054.3,ENST00000368048.3,ENST00000311224.4,ENST00000368047.3	chr1	160523684:160523936:160535193:160535535:160549181:160549263,	160535194	160535535	160535278	160535279	Nonsense_Mutation	CC	AA	p.101_102ME>I*
LUAD	TCGA-05-4398-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000389980.3	chr2	54850615:54850733:54851940:54852099:54853068:54853371,	54851941	54852099	54852019	54852019	Nonsense_Mutation	G	T	p.E421*
LUAD	TCGA-05-4398-01	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1616833:1617151:1629697:1630051,1615912:1616245:1616833:1617151:1629697:1630054,	1616834	1617151	1616967	1616967	Nonsense_Mutation	G	T	p.Y205*
LUAD	TCGA-05-4410-01	INPP5A	ENST00000445580.1	chr10	134594352:134594421:134595364:134595401:134595540:134595909,	134595365	134595401	134595383	134595383	Nonsense_Mutation	C	T	p.R393*
LUAD	TCGA-05-4410-01	INPP5A	ENST00000368594.3	chr10	134594352:134594421:134595364:134595452:134595540:134595909,	134595365	134595452	134595383	134595383	Nonsense_Mutation	C	T	p.R393*
LUAD	TCGA-05-4410-01	SYNE2	ENST00000357395.3,ENST00000555612.1,ENST00000358025.3,ENST00000553289.1,ENST00000394768.2,ENST00000344113.4,ENST00000555002.1	chr14	64644075:64644201:64653141:64653297:64655267:64655426,	64653142	64653297	64653253	64653253	Nonsense_Mutation	C	T	p.Q5890*
LUAD	TCGA-05-4410-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93603571:93603740:93605179:93605347:93611776:93611966,	93605180	93605347	93605239	93605240	Nonsense_Mutation	CC	AT	p.E422*
LUAD	TCGA-05-4410-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138451339	138451339	Nonsense_Mutation	G	T	p.S635*
LUAD	TCGA-05-4410-01	CDK14	ENST00000446224.1,ENST00000456689.1,ENST00000406263.1,ENST00000380050.3,ENST00000478540.1,ENST00000430760.1,ENST00000265741.3,ENST00000449528.1	chr7	90355880:90356126:90376995:90377090:90419887:90419929,	90376996	90377090	90377056	90377056	Nonsense_Mutation	G	T	p.G144*
LUAD	TCGA-05-4422-01	SAAL1	ENST00000531751.1	chr11	18105081:18105278:18108412:18108601:18108689:18108753,18102957:18103050:18108412:18108601:18108689:18108753,	18108413	18108601	18108506	18108506	Nonsense_Mutation	G	A	p.Q317*
LUAD	TCGA-05-4424-01	STAT5A	ENST00000588868.1,ENST00000452307.2,ENST00000590949.1,ENST00000546010.2,ENST00000345506.4	chr17	40452147:40452299:40452732:40452888:40453292:40453472,	40452733	40452888	40452733	40452733	Nonsense_Mutation	G	A	p.W278*
LUAD	TCGA-05-4424-01	NDUFA8	ENST00000373768.3	chr9	124906336:124906657:124910390:124910556:124914523:124914687,	124910391	124910556	124910549	124910550	Nonsense_Mutation	TT	AG	p.K75*
LUAD	TCGA-05-4425-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056307	27056307	Nonsense_Mutation	C	T	p.Q435*
LUAD	TCGA-05-4432-01	ZC3H12C	ENST00000453089.2,ENST00000528673.1,ENST00000278590.3	chr11	110007387:110008139:110023643:110023783:110029980:110030215,	110023644	110023783	110023681	110023681	Nonsense_Mutation	A	T	p.K271*
LUAD	TCGA-05-4432-01	PSG8	ENST00000600709.1	chr19	43256878:43257528:43258484:43258739:43262153:43262432,	43258485	43258739	43258604	43258604	Nonsense_Mutation	G	C	p.S375*
LUAD	TCGA-05-5420-01	FANCI	ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89807752:89807838:89811629:89811756:89816607:89816700,	89811630	89811756	89811675	89811676	Nonsense_Mutation	GG	CT	p.E268*
LUAD	TCGA-05-5423-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220300091:220300185:220307743:220307852:220310150:220310253,	220307744	220307852	220307776	220307776	Nonsense_Mutation	G	T	p.G624*
LUAD	TCGA-05-5423-01	TM4SF4	ENST00000463068.1,ENST00000305354.4	chr3	149193609:149193699:149205405:149205542:149216508:149216698,	149205406	149205542	149205451	149205451	Nonsense_Mutation	G	T	p.G104*
LUAD	TCGA-05-5423-01	STAU2	ENST00000521727.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521447.1	chr8	74529526:74529686:74585341:74585477:74600888:74601048,	74585342	74585477	74585457	74585458	Nonsense_Mutation	CC	AA	p.E99*
LUAD	TCGA-38-4631-01	IGDCC4	ENST00000352385.2	chr15	65694688:65694825:65702515:65702657:65703357:65703423,	65702516	65702657	65702613	65702614	Nonsense_Mutation	CC	AA	p.155_156EE>D*
LUAD	TCGA-38-4631-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26951250:26951408:26955282:26955577:26958496:26958696,	26955283	26955577	26955577	26955577	Nonsense_Mutation	C	A	p.E1434*
LUAD	TCGA-38-4631-01	ZNF135	ENST00000439855.2,ENST00000313434.5,ENST00000511556.1	chr19	58570647:58570678:58572947:58573074:58574813:58574909,58571341:58571403:58572947:58573074:58574813:58574909,	58572948	58573074	58572990	58572990	Nonsense_Mutation	G	T	p.E26*
LUAD	TCGA-38-4631-01	SFTPB	ENST00000409383.1,ENST00000393822.3,ENST00000473692.1,ENST00000342375.3,ENST00000428225.1	chr2	85894228:85894300:85894801:85894929:85895239:85895295,	85894802	85894929	85894864	85894864	Nonsense_Mutation	G	A	p.Q45*
LUAD	TCGA-38-4631-01	SUN1	ENST00000471349.1,ENST00000456758.2,ENST00000493681.1,ENST00000413171.2,ENST00000340926.3	chr7	882842:882869:882977:883157:888054:888058,	882978	883157	883154	883154	Nonsense_Mutation	A	T	p.K219*
LUAD	TCGA-38-4631-01	CASK	ENST00000378166.4,ENST00000378154.1,ENST00000378163.1,ENST00000378158.1,ENST00000361962.4,ENST00000421587.2,ENST00000318588.9,ENST00000442742.2	chrX	41485856:41485956:41495830:41495914:41519691:41519814,	41495831	41495914	41495914	41495914	Nonsense_Mutation	C	A	p.E278*
LUAD	TCGA-38-4631-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130409107:130409260:130409451:130409739:130409934:130410222,	130409452	130409739	130409602	130409602	Nonsense_Mutation	G	A	p.Q1012*
LUAD	TCGA-38-4632-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298531	34298531	Nonsense_Mutation	G	A	p.W898*
LUAD	TCGA-38-4632-01	LTBP1	ENST00000415140.2	chr2	33500975:33500990:33505105:33505225:33518226:33518349,33500975:33500990:33505105:33505225:33525517:33525640,	33505106	33505225	33505174	33505174	Nonsense_Mutation	C	T	p.Q1022*
LUAD	TCGA-38-4632-01	MUC21	ENST00000376296.3	chr6	30951494:30951796:30954013:30955458:30955776:30956414,	30954014	30955458	30955046	30955047	Nonsense_Mutation	CC	AA	p.S365*
LUAD	TCGA-38-6178-01	CROT	ENST00000419147.2,ENST00000331536.3,ENST00000442291.1	chr7	87011225:87011309:87011389:87011497:87011728:87011859,	87011390	87011497	87011405	87011405	Nonsense_Mutation	C	T	p.R360*
LUAD	TCGA-44-2656-01	CD244	ENST00000368033.3	chr1	160808728:160808839:160810999:160811290:160811373:160811691,	160811000	160811290	160811267	160811267	Nonsense_Mutation	C	A	p.E135*
LUAD	TCGA-44-2656-01	CD244	ENST00000368034.4,ENST00000368032.2,ENST00000492063.1	chr1	160808728:160808839:160810999:160811275:160811373:160811691,	160811000	160811275	160811267	160811267	Nonsense_Mutation	C	A	p.E135*
LUAD	TCGA-44-2656-01	FCRLA	ENST00000367953.3,ENST00000367959.2	chr1	161677084:161677133:161680549:161680702:161680997:161681262,161677084:161677133:161680549:161680702:161681723:161682008,161677084:161677133:161680549:161680702:161682874:161683242,161680267:161680282:161680549:161680702:161680997:161681262,	161680550	161680702	161680697	161680698	Nonsense_Mutation	CC	AA	p.S99*
LUAD	TCGA-44-2656-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228523491:228523552:228523900:228523971:228524704:228524827,	228523901	228523971	228523918	228523918	Nonsense_Mutation	C	A	p.S5495*
LUAD	TCGA-44-2656-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46231280:46231490:46233111:46233279:46240638:46240720,	46233112	46233279	46233207	46233207	Nonsense_Mutation	C	T	p.Q476*
LUAD	TCGA-44-2656-01	ARID2	ENST00000444670.1	chr12	46231280:46231490:46233168:46233279:46240638:46240720,	46233169	46233279	46233207	46233207	Nonsense_Mutation	C	T	p.Q476*
LUAD	TCGA-44-2656-01	TIMELESS	ENST00000553532.1,ENST00000557589.1,ENST00000229201.4,ENST00000554616.1	chr12	56811690:56811792:56811917:56812143:56814352:56814471,	56811918	56812143	56811918	56811918	Nonsense_Mutation	C	A	p.E1152*
LUAD	TCGA-44-2659-01	TRIM69	ENST00000558173.1,ENST00000558329.1,ENST00000560442.1,ENST00000561043.1,ENST00000329464.4,ENST00000561170.1,ENST00000559390.1,ENST00000338264.4	chr15	45051837:45051860:45051945:45052070:45059428:45059641,	45051946	45052070	45052015	45052015	Nonsense_Mutation	C	A	p.Y302*
LUAD	TCGA-44-2665-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131375	202131375	Nonsense_Mutation	G	T	p.E56*
LUAD	TCGA-44-2665-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131375	202131375	Nonsense_Mutation	G	T	p.E56*
LUAD	TCGA-44-3919-01	PSME2	ENST00000558273.1,ENST00000560370.1,ENST00000559056.1,ENST00000216802.5,ENST00000471700.2,ENST00000560410.1	chr14	24613608:24613677:24614266:24614364:24614451:24614482,	24614267	24614364	24614335	24614335	Nonsense_Mutation	C	A	p.E98*
LUAD	TCGA-44-3919-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38420741:38421398:38430041:38430251:38433334:38433384,	38430042	38430251	38430162	38430162	Nonsense_Mutation	C	G	p.S364*
LUAD	TCGA-44-6145-01	DNAH9	ENST00000262442.4,ENST00000454412.2	chr17	11584039:11584206:11592882:11593753:11597184:11597315,	11592883	11593753	11592948	11592949	Nonsense_Mutation	CC	AA	p.S1270*
LUAD	TCGA-44-6145-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257679	9257679	Nonsense_Mutation	G	T	p.E1472*
LUAD	TCGA-44-6774-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680330	6680331	Nonsense_Mutation	GG	TT	p.203_204QG>H*
LUAD	TCGA-44-6774-01	BTBD8	ENST00000342818.3,ENST00000540648.1	chr1	92546094:92546277:92554254:92554452:92568029:92568226,	92554255	92554452	92554451	92554451	Nonsense_Mutation	C	T	p.Q116*
LUAD	TCGA-44-6774-01	XKRX	ENST00000372956.2	chrX	100169287:100170072:100177781:100178050:100182958:100183024,	100177782	100178050	100178004	100178004	Nonsense_Mutation	C	A	p.E128*
LUAD	TCGA-44-6777-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000438707.1,ENST00000419325.1,ENST00000388738.3	chr4	123230519:123230619:123234782:123234842:123236616:123236843,	123234783	123234842	123234842	123234842	Nonsense_Mutation	G	T	p.E3438*
LUAD	TCGA-44-7659-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107682	168107683	Nonsense_Mutation	GG	TT	p.3260_3261EE>D*
LUAD	TCGA-44-7662-01	SH3PXD2A	ENST00000538130.1,ENST00000540321.1,ENST00000420222.1,ENST00000315994.6,ENST00000369774.4,ENST00000355946.2	chr10	105361531:105363546:105365554:105365674:105371337:105371387,	105365555	105365674	105365611	105365611	Nonsense_Mutation	C	A	p.E430*
LUAD	TCGA-44-7670-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000545570.1,ENST00000395532.4,ENST00000359285.5,ENST00000322610.8,ENST00000566176.1	chr16	28878694:28878753:28880326:28880418:28880528:28880610,	28880327	28880418	28880417	28880417	Nonsense_Mutation	G	T	p.G378*
LUAD	TCGA-44-7670-01	KARS	ENST00000562875.1,ENST00000319410.5,ENST00000564578.1,ENST00000302445.3	chr16	75665619:75665753:75668070:75668190:75669577:75669703,	75668071	75668190	75668121	75668121	Nonsense_Mutation	C	A	p.E289*
LUAD	TCGA-44-7670-01	TTC29	ENST00000508306.1,ENST00000513335.1,ENST00000504425.1,ENST00000325106.4,ENST00000398886.4	chr4	147788649:147788735:147795867:147796080:147824695:147824881,	147795868	147796080	147796051	147796051	Nonsense_Mutation	C	A	p.E206*
LUAD	TCGA-44-7671-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372601	180372601	Nonsense_Mutation	A	T	p.C293*
LUAD	TCGA-44-7671-01	PIM1	ENST00000373509.5	chr6	37138974:37139267:37140771:37140948:37141709:37142023,	37140772	37140948	37140918	37140918	Nonsense_Mutation	C	T	p.Q252*
LUAD	TCGA-49-4490-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16208622:16208933:16215831:16216031:16218645:16218772,	16215832	16216031	16215937	16215937	Nonsense_Mutation	C	T	p.R1166*
LUAD	TCGA-49-4514-01	ACSM1	ENST00000523065.1	chr16	20696514:20696725:20702318:20702557:20708957:20709066,	20702319	20702557	20702413	20702413	Nonsense_Mutation	G	C	p.S33*
LUAD	TCGA-49-4514-01	ACSM1	ENST00000520010.1	chr16	20696514:20696725:20702318:20702561:20708957:20709066,	20702319	20702561	20702413	20702413	Nonsense_Mutation	G	C	p.S33*
LUAD	TCGA-49-6742-01	DOK2	ENST00000276420.4	chr8	21767344:21767442:21768183:21768368:21769411:21769493,	21768184	21768368	21768239	21768240	Nonsense_Mutation	CC	TA	p.G188*
LUAD	TCGA-49-6744-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511383	169511383	Nonsense_Mutation	C	T	p.W982*
LUAD	TCGA-49-6744-01	ACTG2	ENST00000409624.1,ENST00000345517.3,ENST00000442912.1	chr2	74128411:74128564:74129486:74129615:74135799:74135910,	74129487	74129615	74129498	74129499	Nonsense_Mutation	GG	TT	p.G47*
LUAD	TCGA-49-6744-01	ZAN	ENST00000546292.1,ENST00000443370.1,ENST00000349350.6,ENST00000421100.1,ENST00000538115.1,ENST00000348028.3,ENST00000449052.1,ENST00000427578.1,ENST00000542585.1	chr7	100386839:100386969:100388563:100388735:100389587:100389770,	100388564	100388735	100388611	100388611	Nonsense_Mutation	G	T	p.G2469*
LUAD	TCGA-49-6761-01	STAU1	ENST00000371828.3,ENST00000340954.7,ENST00000371802.1,ENST00000437404.2,ENST00000371792.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47752369:47752468:47768118:47768284:47770469:47770608,	47768119	47768284	47768130	47768130	Nonsense_Mutation	C	A	p.E167*
LUAD	TCGA-50-5049-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171906573:171906684:171910270:171910363:171911592:171911682,	171910271	171910363	171910294	171910294	Nonsense_Mutation	C	A	p.G237*
LUAD	TCGA-50-5933-01	DPYD	ENST00000370192.3	chr1	97915614:97915779:97981281:97981497:98015115:98015204,	97981282	97981497	97981341	97981341	Nonsense_Mutation	G	A	p.R561*
LUAD	TCGA-50-5933-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62194170:62194373:62199135:62199242:62200855:62201003,	62199136	62199242	62199167	62199167	Nonsense_Mutation	G	T	p.E269*
LUAD	TCGA-50-5936-01	BBS1	ENST00000393994.2,ENST00000524907.1,ENST00000534730.1,ENST00000318312.7,ENST00000529766.1	chr11	66278675:66278710:66281876:66282149:66283010:66283057,	66281877	66282149	66282099	66282099	Nonsense_Mutation	C	T	p.Q128*
LUAD	TCGA-50-5941-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724103	230724103	Nonsense_Mutation	G	A	p.Q96*
LUAD	TCGA-50-5941-01	BTD	ENST00000303498.5	chr3	15643307:15643401:15676930:15677195:15683414:15683564,	15676931	15677195	15677046	15677046	Nonsense_Mutation	G	T	p.E54*
LUAD	TCGA-50-6593-01	HEATR5B	ENST00000233099.5	chr2	37217790:37217942:37227728:37227956:37229448:37229715,	37227729	37227956	37227729	37227729	Nonsense_Mutation	C	A	p.E1849*
LUAD	TCGA-50-7109-01	EIF2AK2	ENST00000233057.4,ENST00000395127.2	chr2	37347101:37347282:37349648:37349807:37353431:37353534,	37349649	37349807	37349800	37349801	Nonsense_Mutation	CC	AA	p.E306*
LUAD	TCGA-53-7626-01	PICALM	ENST00000529016.1	chr11	85685824:85685855:85692171:85692271:85692787:85692818,85670079:85670103:85692171:85692271:85692787:85692818,	85692172	85692271	85692255	85692255	Nonsense_Mutation	G	A	p.Q566*
LUAD	TCGA-53-7626-01	SOX5	ENST00000536911.1	chr12	23793745:23793831:23818377:23818501:23887617:23887649,	23818378	23818501	23818489	23818489	Nonsense_Mutation	G	A	p.Q274*
LUAD	TCGA-53-7626-01	SOX5	ENST00000546136.1,ENST00000535530.1,ENST00000537393.1,ENST00000541536.1,ENST00000309359.1,ENST00000367206.3,ENST00000545921.1,ENST00000451604.2,ENST00000536629.1,ENST00000381381.2	chr12	23793745:23793831:23818377:23818498:23887617:23887649,	23818378	23818498	23818489	23818489	Nonsense_Mutation	G	A	p.Q274*
LUAD	TCGA-55-1592-01	NCKAP5	ENST00000405974.3,ENST00000409213.1	chr2	133531388:133531467:133547595:133547778:133554200:133554302,	133547596	133547778	133547750	133547750	Nonsense_Mutation	A	T	p.L313*
LUAD	TCGA-55-1594-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205495	236205495	Nonsense_Mutation	C	A	p.E284*
LUAD	TCGA-55-1594-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132088	51132088	Nonsense_Mutation	G	C	p.S115*
LUAD	TCGA-55-1596-01	LRRC7	ENST00000035383.5,ENST00000310961.5	chr1	70486687:70486812:70488808:70489057:70493853:70494054,	70488809	70489057	70488886	70488886	Nonsense_Mutation	C	A	p.C503*
LUAD	TCGA-55-6712-01	PLEKHG5	ENST00000535355.1,ENST00000377732.1,ENST00000400913.1,ENST00000340850.5,ENST00000489097.1,ENST00000377737.2,ENST00000487949.1,ENST00000537245.1,ENST00000377748.1,ENST00000377728.3,ENST00000400915.3	chr1	6527564:6527632:6527884:6528646:6529101:6529301,	6527885	6528646	6528641	6528641	Nonsense_Mutation	G	C	p.S808*
LUAD	TCGA-55-6712-01	PLEKHG5	ENST00000377725.1,ENST00000544978.1	chr1	6527902:6527958:6528158:6528646:6529101:6529301,	6528159	6528646	6528641	6528641	Nonsense_Mutation	G	C	p.S808*
LUAD	TCGA-55-6972-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510973	169510973	Nonsense_Mutation	G	A	p.Q1119*
LUAD	TCGA-55-6979-01	ASAP1	ENST00000518721.1	chr8	131370262:131370389:131414130:131414216:131455705:131455783,	131414131	131414216	131414163	131414164	Nonsense_Mutation	GG	TT	p.S9*
LUAD	TCGA-55-6982-01	FOLH1	ENST00000340334.7,ENST00000356696.3,ENST00000533034.1,ENST00000256999.2	chr11	49204700:49204794:49207220:49207407:49208195:49208320,	49207221	49207407	49207299	49207299	Nonsense_Mutation	C	A	p.G250*
LUAD	TCGA-55-7281-01	ITGA9	ENST00000422441.1,ENST00000264741.5	chr3	37522974:37523098:37535991:37536059:37544668:37544798,	37535992	37536059	37536029	37536030	Nonsense_Mutation	CC	TT	p.Q195*
LUAD	TCGA-55-7283-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228494959:228495232:228495811:228496084:228496799:228496996,	228495812	228496084	228495874	228495874	Nonsense_Mutation	G	T	p.E4177*
LUAD	TCGA-55-7574-01	LZTS1	ENST00000381569.1,ENST00000522290.1,ENST00000265801.6	chr8	20107622:20107874:20110292:20111096:20112347:20112692,	20110293	20111096	20110421	20110422	Nonsense_Mutation	CC	AA	p.340_341QE>H*
LUAD	TCGA-55-7576-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171260756:171260910:171262054:171262143:171264224:171264354,	171262055	171262143	171262116	171262116	Nonsense_Mutation	C	A	p.C831*
LUAD	TCGA-55-7727-01	CUL4A	ENST00000375441.3,ENST00000326335.4,ENST00000470067.1,ENST00000472083.1,ENST00000375440.4,ENST00000451881.1	chr13	113900269:113900377:113907395:113907509:113909006:113909089,	113907396	113907509	113907459	113907459	Nonsense_Mutation	C	T	p.Q568*
LUAD	TCGA-55-7907-01	HSP90AA1	ENST00000216281.8,ENST00000334701.7	chr14	102547385:102548158:102548447:102548781:102549370:102549639,	102548448	102548781	102548771	102548771	Nonsense_Mutation	G	T	p.S589*
LUAD	TCGA-55-7911-01	RNF17	ENST00000255325.6,ENST00000381921.1,ENST00000255324.5	chr13	25367179:25367484:25370274:25370433:25373532:25373722,	25370275	25370433	25370318	25370319	Nonsense_Mutation	CC	AA	p.428_429CH>*N
LUAD	TCGA-55-7914-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511240	169511240	Nonsense_Mutation	G	A	p.R1030*
LUAD	TCGA-55-7914-01	NSUN5	ENST00000428206.1,ENST00000455763.1,ENST00000310326.8,ENST00000438747.2,ENST00000252594.6	chr7	72718312:72718405:72718743:72718859:72718955:72719094,	72718744	72718859	72718748	72718748	Nonsense_Mutation	G	A	p.Q251*
LUAD	TCGA-64-1676-01	PDE3A	ENST00000359062.3,ENST00000544307.1	chr12	20799684:20799884:20801621:20801825:20803378:20803534,	20801622	20801825	20801732	20801733	Nonsense_Mutation	GG	TT	p.E893*
LUAD	TCGA-64-1676-01	DGKI	ENST00000460662.2	chr7	137154295:137154365:137172355:137172435:137206611:137206712,	137172356	137172435	137172361	137172361	Nonsense_Mutation	G	A	p.Q793*
LUAD	TCGA-64-1677-01	SCAMP3	ENST00000465312.1,ENST00000462151.1	chr1	155228616:155228683:155230120:155230241:155230327:155230450,	155230121	155230241	155230148	155230148	Nonsense_Mutation	G	A	p.Q121*
LUAD	TCGA-64-1678-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751288	102751288	Nonsense_Mutation	C	T	p.Q132*
LUAD	TCGA-64-1679-01	RBM6	ENST00000421682.1	chr3	50107887:50107985:50112605:50112763:50114440:50114680,	50112606	50112763	50112758	50112758	Nonsense_Mutation	G	T	p.E1081*
LUAD	TCGA-64-1679-01	RBM6	ENST00000442092.1,ENST00000539992.1,ENST00000419610.1,ENST00000443081.1,ENST00000422955.1,ENST00000454079.1,ENST00000266022.4	chr3	50107887:50107985:50112633:50112763:50114440:50114680,	50112634	50112763	50112758	50112758	Nonsense_Mutation	G	T	p.E1081*
LUAD	TCGA-64-1679-01	SPEF2	ENST00000303129.4,ENST00000506526.1,ENST00000513078.1,ENST00000440995.2,ENST00000356031.3	chr5	35795804:35795897:35800069:35800249:35806808:35807054,	35800070	35800249	35800100	35800100	Nonsense_Mutation	A	T	p.K1621*
LUAD	TCGA-64-1679-01	CENPI	ENST00000423383.1,ENST00000372926.1,ENST00000372927.1,ENST00000218507.5	chrX	100375726:100375773:100381697:100381787:100382126:100382255,	100381698	100381787	100381698	100381698	Nonsense_Mutation	G	T	p.G230*
LUAD	TCGA-64-5778-01	IFI16	ENST00000483916.1	chr1	159015086:159015254:159021468:159023514:159024610:159024914,159019221:159019389:159021468:159023514:159024610:159024914,	159021469	159023514	159021489	159021490	Nonsense_Mutation	TG	CT	p.E507*
LUAD	TCGA-64-5778-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000368132.3,ENST00000295809.7	chr1	159019221:159019389:159021468:159021888:159023322:159023514,	159021469	159021888	159021489	159021490	Nonsense_Mutation	TG	CT	p.E507*
LUAD	TCGA-64-5778-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91488265:91488293:91489843:91490144:91491025:91491120,	91489844	91490144	91489890	91489890	Nonsense_Mutation	C	T	p.Q416*
LUAD	TCGA-64-5778-01	TMPRSS2	ENST00000398585.3,ENST00000454499.1,ENST00000458356.1,ENST00000424093.1,ENST00000332149.5	chr21	42861433:42861520:42866282:42866505:42870045:42870116,	42866283	42866505	42866466	42866466	Nonsense_Mutation	C	A	p.G19*
LUAD	TCGA-67-3771-01	ARHGAP12	ENST00000396144.4,ENST00000497103.1,ENST00000375245.4,ENST00000344936.2,ENST00000492028.1,ENST00000375250.5,ENST00000311380.4	chr10	32101634:32101751:32103186:32103289:32106715:32106814,	32103187	32103289	32103262	32103262	Nonsense_Mutation	C	A	p.E587*
LUAD	TCGA-67-3771-01	ENTPD1	ENST00000371207.3,ENST00000543964.1,ENST00000453258.2,ENST00000371205.4,ENST00000539125.1,ENST00000371203.5,ENST00000483213.1	chr10	97604331:97604392:97605113:97605353:97607202:97607256,	97605114	97605353	97605318	97605318	Nonsense_Mutation	C	T	p.Q260*
LUAD	TCGA-67-3771-01	HRASLS5	ENST00000540857.1,ENST00000539221.1,ENST00000538712.1,ENST00000301790.4	chr11	63233631:63233844:63235828:63235937:63258358:63258411,63233631:63233844:63235828:63235937:63256342:63256448,	63235829	63235937	63235916	63235916	Nonsense_Mutation	C	A	p.G133*
LUAD	TCGA-67-3772-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1,ENST00000421462.1,ENST00000426248.3	chr2	159497138:159497271:159498997:159499211:159514642:159514826,	159498998	159499211	159499085	159499085	Nonsense_Mutation	C	T	p.R595*
LUAD	TCGA-67-3774-01	ST6GALNAC3	ENST00000328299.3	chr1	76877692:76878102:77093136:77093244:77094304:77100286,	77093137	77093244	77093218	77093218	Nonsense_Mutation	C	A	p.Y235*
LUAD	TCGA-67-6217-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631634	116631634	Nonsense_Mutation	C	A	p.E218*
LUAD	TCGA-69-7765-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616900	25616900	Nonsense_Mutation	C	A	p.E144*
LUAD	TCGA-69-7765-01	SMURF1	ENST00000361368.2,ENST00000480055.1,ENST00000361125.1	chr7	98652412:98652488:98654827:98654893:98655040:98655174,	98654828	98654893	98654860	98654860	Nonsense_Mutation	G	C	p.S124*
LUAD	TCGA-69-7980-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236708	33236708	Nonsense_Mutation	C	G	p.S584*
LUAD	TCGA-73-4658-01	CNN3	ENST00000370206.4,ENST00000474409.1,ENST00000545882.1,ENST00000538964.1,ENST00000415017.1	chr1	95367733:95367814:95368677:95368744:95368958:95369080,	95368678	95368744	95368680	95368680	Nonsense_Mutation	G	A	p.Q82*
LUAD	TCGA-73-4658-01	UBE4A	ENST00000545354.1,ENST00000252108.3,ENST00000431736.2	chr11	118261371:118261519:118263452:118263610:118267028:118267222,	118263453	118263610	118263480	118263480	Nonsense_Mutation	G	T	p.E982*
LUAD	TCGA-73-4658-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1,ENST00000414826.1	chr3	175181188:175181281:175184766:175184972:175189426:175189546,	175184767	175184972	175184875	175184875	Nonsense_Mutation	C	G	p.S479*
LUAD	TCGA-73-4658-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20691042:20691246:20698128:20698299:20721127:20721289,	20698129	20698299	20698213	20698213	Nonsense_Mutation	C	T	p.R96*
LUAD	TCGA-73-4658-01	CNOT4	ENST00000414802.1,ENST00000361528.4,ENST00000315544.5,ENST00000428680.2,ENST00000541284.1,ENST00000356162.4,ENST00000451834.1,ENST00000423368.2	chr7	135079051:135079167:135080385:135080635:135082920:135082978,	135080386	135080635	135080502	135080502	Nonsense_Mutation	G	C	p.S338*
LUAD	TCGA-73-4659-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2,ENST00000536483.1	chr8	48689404:48689544:48690246:48690435:48691019:48691098,	48690247	48690435	48690420	48690420	Nonsense_Mutation	C	A	p.E3957*
LUAD	TCGA-73-7499-01	IL31RA	ENST00000354961.4,ENST00000396836.2,ENST00000447346.2,ENST00000396834.1,ENST00000359040.5	chr5	55155336:55155427:55164618:55164736:55168097:55168279,	55164619	55164736	55164714	55164714	Nonsense_Mutation	C	T	p.Q84*
LUAD	TCGA-75-5126-01	ESRP2	ENST00000251366.3,ENST00000562724.1,ENST00000569964.1,ENST00000564465.1,ENST00000564382.1,ENST00000473183.2,ENST00000565858.1	chr16	68267718:68267785:68267896:68268010:68269536:68269611,	68267897	68268010	68268006	68268006	Nonsense_Mutation	G	C	p.S111*
LUAD	TCGA-75-6207-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290277	132290277	Nonsense_Mutation	C	T	p.R267*
LUAD	TCGA-75-7031-01	TFAP2A	ENST00000466073.1	chr6	10400680:10400822:10402724:10402843:10404740:10404827,10398920:10398938:10402724:10402843:10404740:10404827,	10402725	10402843	10402725	10402725	Nonsense_Mutation	C	A	p.G295*
LUAD	TCGA-78-7150-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116632237	116632237	Nonsense_Mutation	C	A	p.E17*
LUAD	TCGA-78-7154-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99321600:99322317:99323290:99323603:99328428:99328500,	99323291	99323603	99323402	99323402	Nonsense_Mutation	G	A	p.Q531*
LUAD	TCGA-78-7155-01	FBXL7	ENST00000504595.1,ENST00000329673.7,ENST00000510662.1	chr5	15616091:15616181:15927998:15928610:15936558:15937295,	15927999	15928610	15928421	15928422	Nonsense_Mutation	GT	TA	p.V184*
LUAD	TCGA-78-7155-01	TRPC7	ENST00000502753.2	chr5	135610360:135610525:135651284:135651467:135692295:135693073,135601907:135602124:135651284:135651467:135692295:135693073,	135651285	135651467	135651404	135651405	Nonsense_Mutation	GG	TT	p.C280*
LUAD	TCGA-78-7156-01	SDHA	ENST00000503674.1	chr5	240558:240591:251106:251218:251452:251474,249168:250891:251106:251218:251452:251474,	251107	251218	251218	251218	Nonsense_Mutation	G	T	p.G555*
LUAD	TCGA-78-7158-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27497317:27497475:27499547:27499736:27499874:27499956,	27499548	27499736	27499675	27499675	Nonsense_Mutation	C	T	p.W1191*
LUAD	TCGA-78-7162-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101821754:101821937:101833092:101833151:101837121:101837170,	101833093	101833151	101833099	101833099	Nonsense_Mutation	G	T	p.E342*
LUAD	TCGA-78-7167-01	AKR7A2	ENST00000235835.3,ENST00000481966.1,ENST00000330072.5	chr1	19630778:19630880:19632511:19632641:19633495:19633595,	19632512	19632641	19632530	19632530	Nonsense_Mutation	G	C	p.Y300*
LUAD	TCGA-78-7167-01	ZNF280D	ENST00000267807.7,ENST00000560002.1,ENST00000396245.1,ENST00000559237.1,ENST00000558002.1,ENST00000559000.1	chr15	56970861:56971019:56974451:56974675:56981238:56981348,	56974452	56974675	56974516	56974516	Nonsense_Mutation	C	A	p.E314*
LUAD	TCGA-78-7167-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103772	168103773	Nonsense_Mutation	CG	AA	p.S1957*
LUAD	TCGA-78-7167-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3176447:3176526:3176672:3176834:3179058:3179114,	3176673	3176834	3176766	3176766	Nonsense_Mutation	C	T	p.Q1449*
LUAD	TCGA-78-7536-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000471582.1,ENST00000422202.1	chr20	61959430:61959497:61959682:61959850:61960936:61961013,	61959683	61959850	61959818	61959818	Nonsense_Mutation	G	A	p.W1250*
LUAD	TCGA-78-7539-01	COL12A1	ENST00000345356.6,ENST00000425443.2,ENST00000511023.1,ENST00000416123.2,ENST00000322507.8	chr6	75801205:75801241:75804823:75804895:75806968:75807022,	75804824	75804895	75804895	75804895	Nonsense_Mutation	C	A	p.G2860*
LUAD	TCGA-78-7542-01	NMT2	ENST00000540259.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15151097:15151214:15151700:15151838:15154794:15154962,	15151701	15151838	15151838	15151838	Nonsense_Mutation	T	A	p.K447*
LUAD	TCGA-78-7542-01	ZNF480	ENST00000334564.7	chr19	52803646:52803737:52817405:52817532:52819086:52819215,52803646:52803737:52817405:52817532:52824831:52824900,	52817406	52817532	52817532	52817532	Nonsense_Mutation	G	T	p.G67*
LUAD	TCGA-78-7542-01	PTMA	ENST00000409683.1	chr2	232576677:232576693:232577161:232577226:232577513:232577536,	232577162	232577226	232577179	232577179	Nonsense_Mutation	G	T	p.E81*
LUAD	TCGA-78-7542-01	PTMA	ENST00000466801.1,ENST00000412128.1,ENST00000341369.7,ENST00000409115.3,ENST00000448874.1,ENST00000410064.1,ENST00000481928.1,ENST00000409321.1	chr2	232576677:232576693:232577152:232577226:232577513:232577536,	232577153	232577226	232577179	232577179	Nonsense_Mutation	G	T	p.E81*
LUAD	TCGA-80-5607-01	TNC	ENST00000535648.1,ENST00000341037.4,ENST00000544972.1	chr9	117804497:117804620:117808688:117808961:117835881:117835920,117804497:117804620:117808688:117808961:117815018:117815294,117804497:117804620:117808688:117808961:117810538:117810811,117804497:117804620:117808688:117808961:117819431:117819580,	117808689	117808961	117808761	117808761	Nonsense_Mutation	C	A	p.E1685*
LUAD	TCGA-80-5608-01	SEL1L	ENST00000336735.4	chr14	81945955:81946084:81950568:81950741:81952015:81952090,	81950569	81950741	81950604	81950604	Nonsense_Mutation	C	A	p.G671*
LUAD	TCGA-86-6851-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	138163182:138163377:138169178:138169442:138208414:138208593,	138169179	138169442	138169276	138169276	Nonsense_Mutation	T	A	p.Y900*
LUAD	TCGA-86-6851-01	TPK1	ENST00000547966.1,ENST00000378098.4,ENST00000360057.3	chr7	144150520:144150756:144245583:144245695:144320258:144320354,144150520:144150756:144245583:144245695:144288515:144288662,	144245584	144245695	144245632	144245632	Nonsense_Mutation	C	A	p.G189*
LUAD	TCGA-91-6828-01	RHBDF2	ENST00000389760.4,ENST00000587640.1,ENST00000591885.1,ENST00000313080.4	chr17	74473261:74473380:74473738:74473867:74474887:74475091,	74473739	74473867	74473792	74473792	Nonsense_Mutation	C	A	p.E279*
LUAD	TCGA-91-6829-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73653580:73653681:73659325:73659419:73675089:73681194,	73659326	73659419	73659341	73659341	Nonsense_Mutation	G	T	p.E453*
LUAD	TCGA-91-6829-01	GTF2IRD1	ENST00000424337.2,ENST00000265755.3,ENST00000476977.1,ENST00000470715.1,ENST00000455841.2	chr7	73973956:73973985:74004179:74004257:74005153:74005346,	74004180	74004257	74004251	74004251	Nonsense_Mutation	A	T	p.K813*
LUAD	TCGA-91-6835-01	GSG1L	ENST00000380897.3,ENST00000395724.3,ENST00000447459.2	chr16	27818807:27818875:27840109:27840277:27856270:27856382,	27840110	27840277	27840114	27840114	Nonsense_Mutation	C	A	p.E276*
LUAD	TCGA-91-6840-01	PML	ENST00000268058.3,ENST00000435786.2,ENST00000566068.1,ENST00000268059.6,ENST00000395135.3,ENST00000569477.1	chr15	74317220:74317268:74325496:74325755:74326818:74326871,74324912:74325056:74325496:74325755:74326818:74326871,	74325497	74325755	74325578	74325578	Nonsense_Mutation	G	T	p.E494*
LUAD	TCGA-91-6840-01	PML	ENST00000569965.1,ENST00000436891.3	chr15	74317220:74317268:74325496:74325763:74326818:74326871,74324912:74325056:74325496:74325763:74326818:74326871,	74325497	74325763	74325578	74325578	Nonsense_Mutation	G	T	p.E494*
LUAD	TCGA-95-7039-01	ANKRD26	ENST00000445828.1	chr10	27283969:27284076:27294551:27294652:27295845:27295891,	27294552	27294652	27294557	27294557	Nonsense_Mutation	C	A	p.E1698*
LUAD	TCGA-95-7039-01	HNRNPA3	ENST00000411529.2,ENST00000392524.2,ENST00000435711.1	chr2	178080717:178080916:178081230:178081320:178081403:178081475,	178081231	178081320	178081299	178081299	Nonsense_Mutation	C	T	p.Q208*
LUAD	TCGA-95-7039-01	EIF3B	ENST00000468611.1,ENST00000397011.2,ENST00000360876.4	chr7	2416584:2416710:2418323:2418401:2418768:2418877,	2418324	2418401	2418366	2418366	Nonsense_Mutation	C	T	p.Q733*
LUAD	TCGA-95-7039-01	SLC26A3	ENST00000340010.5,ENST00000379083.3,ENST00000422236.2	chr7	107431543:107431680:107432274:107432385:107434186:107434276,	107432275	107432385	107432291	107432292	Nonsense_Mutation	GG	TT	p.S122*
LUAD	TCGA-95-7043-01	BCAT1	ENST00000539780.1	chr12	25034234:25034345:25047208:25047409:25054747:25054819,25034234:25034345:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25054747:25054819,	25047209	25047409	25047340	25047341	Nonsense_Mutation	CA	AG	p.G50*
LUAD	TCGA-95-7043-01	CAMKK1	ENST00000381771.2,ENST00000381769.2,ENST00000348335.2,ENST00000158166.5	chr17	3776702:3776756:3779516:3779716:3783639:3783728,	3779517	3779716	3779708	3779708	Nonsense_Mutation	G	A	p.Q269*
LUAD	TCGA-95-7043-01	CHD6	ENST00000373233.3	chr20	40112991:40113247:40116304:40116448:40117067:40117244,	40116305	40116448	40116427	40116427	Nonsense_Mutation	C	A	p.G627*
LUAD	TCGA-95-7043-01	C6orf118	ENST00000543069.1,ENST00000230301.8	chr6	165711465:165711590:165712931:165712991:165713852:165713975,	165712932	165712991	165712974	165712974	Nonsense_Mutation	G	T	p.Y298*
LUAD	TCGA-95-7043-01	ARHGAP4	ENST00000454164.1	chrX	153175465:153175539:153175959:153176065:153176153:153176288,	153175960	153176065	153176039	153176039	Nonsense_Mutation	C	A	p.E615*
LUAD	TCGA-95-7043-01	ARHGAP4	ENST00000494397.1	chrX	153175465:153175539:153175624:153176065:153176153:153176288,	153175625	153176065	153176039	153176039	Nonsense_Mutation	C	A	p.E615*
LUAD	TCGA-95-7567-01	PSG9	ENST00000270077.3	chr19	43762353:43762608:43763008:43763287:43771935:43772301,43762353:43762608:43763008:43763287:43766011:43766290,	43763009	43763287	43763165	43763165	Nonsense_Mutation	G	A	p.Q278*
LUAD	TCGA-95-7567-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44047053:44047239:44049935:44050074:44051051:44051257,	44049936	44050074	44050063	44050063	Nonsense_Mutation	G	A	p.R446*
LUAD	TCGA-95-7947-01	ZNF93	ENST00000586021.1,ENST00000591366.1,ENST00000592160.1,ENST00000343769.5	chr19	20011869:20011900:20026088:20026215:20027368:20027464,	20026089	20026215	20026089	20026089	Nonsense_Mutation	G	T	p.G2*
LUAD	TCGA-97-7546-01	SF3A1	ENST00000439242.1,ENST00000215793.8	chr22	30736683:30736801:30737680:30737874:30738188:30738339,	30737681	30737874	30737734	30737734	Nonsense_Mutation	C	A	p.E340*
LUAD	TCGA-97-7546-01	BCOR	ENST00000397354.3,ENST00000442018.1,ENST00000413905.1,ENST00000342274.4,ENST00000378444.4,ENST00000378455.4,ENST00000427012.1,ENST00000378463.1	chrX	39916407:39916574:39921391:39921646:39921998:39922190,	39921392	39921646	39921532	39921532	Nonsense_Mutation	G	A	p.Q1430*
LUAD	TCGA-97-7554-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451569	55451569	Nonsense_Mutation	G	T	p.Y206*
LUAD	TCGA-99-7458-01	SLC35F3	ENST00000366618.3	chr1	234041274:234041504:234367162:234367487:234444846:234445066,	234367163	234367487	234367270	234367270	Nonsense_Mutation	C	T	p.Q62*
LUAD	TCGA-99-7458-01	GPR158	ENST00000376351.3	chr10	25684839:25684942:25701178:25701402:25755579:25755648,	25701179	25701402	25701316	25701316	Nonsense_Mutation	C	T	p.R417*
LUAD	TCGA-99-7458-01	FCHO1	ENST00000596536.1,ENST00000602111.1,ENST00000597512.1,ENST00000600058.1,ENST00000389133.4,ENST00000595033.1,ENST00000594202.1,ENST00000252771.7,ENST00000600676.1,ENST00000539407.1,ENST00000595594.1,ENST00000596951.1	chr19	17892260:17892348:17892520:17892629:17893825:17893867,	17892521	17892629	17892527	17892528	Nonsense_Mutation	CC	AA	p.S612*
LUAD	TCGA-99-7458-01	SUN1	ENST00000433212.1,ENST00000456758.2,ENST00000405266.1,ENST00000429178.1,ENST00000389574.3,ENST00000413171.2,ENST00000413514.2,ENST00000452783.2,ENST00000475971.1,ENST00000401592.1,ENST00000425407.2	chr7	905588:905704:908985:909153:912106:912199,	908986	909153	909028	909028	Nonsense_Mutation	C	T	p.Q675*
LUSC	TCGA-18-3406-01	STIL	ENST00000371877.3,ENST00000360380.3,ENST00000337817.5,ENST00000396221.2,ENST00000243182.6	chr1	47761436:47761520:47765576:47765824:47767232:47767397,	47765577	47765824	47765602	47765602	Nonsense_Mutation	G	A	p.Q226*
LUSC	TCGA-18-3406-01	HMCN1	ENST00000485744.1,ENST00000271588.4,ENST00000367492.2	chr1	185958619:185958779:185959406:185959575:185962313:185962441,	185959407	185959575	185959424	185959424	Nonsense_Mutation	G	T	p.G1076*
LUSC	TCGA-18-3406-01	BIRC6	ENST00000421745.2	chr2	32710709:32710826:32712713:32712868:32713654:32713781,	32712714	32712868	32712731	32712731	Nonsense_Mutation	G	T	p.G2611*
LUSC	TCGA-18-3406-01	PARD3B	ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205990332:205990461:206023445:206023631:206036934:206037105,	206023446	206023631	206023503	206023503	Nonsense_Mutation	G	T	p.E498*
LUSC	TCGA-18-3406-01	HYAL1	ENST00000457214.2,ENST00000320295.8,ENST00000447605.2,ENST00000266031.4,ENST00000395144.2	chr3	50337912:50338231:50338418:50338508:50339487:50339636,	50338419	50338508	50338437	50338437	Nonsense_Mutation	C	T	p.W324*
LUSC	TCGA-18-3406-01	EHMT2	ENST00000465429.1,ENST00000375528.4,ENST00000375530.4,ENST00000375537.4,ENST00000395728.3	chr6	31864039:31864293:31864382:31864601:31864699:31864766,	31864383	31864601	31864517	31864517	Nonsense_Mutation	G	T	p.S65*
LUSC	TCGA-18-3406-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91709170	91709170	Nonsense_Mutation	C	T	p.Q2575*
LUSC	TCGA-18-3406-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86042153:86042293:86043994:86044196:86047081:86047267,	86043995	86044196	86044014	86044014	Nonsense_Mutation	G	T	p.E596*
LUSC	TCGA-18-3406-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71724063	71724063	Nonsense_Mutation	G	A	p.R1496*
LUSC	TCGA-18-3406-01	TMED2	ENST00000509052.2,ENST00000262225.3	chr12	124071293:124071486:124074888:124074996:124081151:124081640,	124074889	124074996	124074954	124074954	Nonsense_Mutation	G	T	p.E147*
LUSC	TCGA-18-3406-01	TMED2	ENST00000543425.1	chr12	124071293:124071486:124074888:124075039:124081151:124081640,	124074889	124075039	124074954	124074954	Nonsense_Mutation	G	T	p.E147*
LUSC	TCGA-18-3406-01	LCMT1	ENST00000576625.1	chr16	25182034:25182118:25186257:25186355:25189321:25189344,25182034:25182126:25186257:25186355:25189321:25189344,25180432:25180534:25186257:25186355:25189321:25189344,	25186258	25186355	25186343	25186343	Nonsense_Mutation	G	T	p.G324*
LUSC	TCGA-18-3406-01	KRT14	ENST00000476662.1,ENST00000167586.6	chr17	39739807:39739928:39740011:39740173:39740508:39740665,	39740012	39740173	39740083	39740083	Nonsense_Mutation	C	A	p.E286*
LUSC	TCGA-18-3406-01	B4GALNT2	ENST00000300404.2,ENST00000504681.1,ENST00000393354.2	chr17	47237916:47238003:47241449:47241637:47243475:47243616,	47241450	47241637	47241536	47241536	Nonsense_Mutation	G	T	p.E345*
LUSC	TCGA-18-3407-01	ADTRP	ENST00000505099.1,ENST00000414691.3,ENST00000512139.1,ENST00000229583.5	chr6	11717541:11717647:11723581:11723733:11735800:11735889,11714610:11714745:11723581:11723733:11728559:11728790,11714610:11714745:11723581:11723733:11735800:11735889,	11723582	11723733	11723606	11723606	Nonsense_Mutation	C	A	p.E230*
LUSC	TCGA-18-3407-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
LUSC	TCGA-18-3407-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
LUSC	TCGA-18-3407-01	SH3GL1	ENST00000417295.2,ENST00000598564.1	chr19	4366499:4366570:4366922:4366991:4400320:4400415,	4366923	4366991	4366964	4366964	Nonsense_Mutation	C	A	p.E25*
LUSC	TCGA-18-3408-01	METTL6	ENST00000383790.3,ENST00000443029.1,ENST00000383789.5	chr3	15457278:15457449:15466461:15466596:15467793:15468142,	15466462	15466596	15466468	15466468	Nonsense_Mutation	A	T	p.Y118*
LUSC	TCGA-18-3408-01	NEK8	ENST00000268766.6,ENST00000543014.1	chr17	27061789:27062022:27062257:27062389:27064323:27064532,	27062258	27062389	27062332	27062332	Nonsense_Mutation	G	A	p.W187*
LUSC	TCGA-18-3409-01	FCRL2	ENST00000368181.4	chr1	157736644:157736761:157740198:157740456:157745564:157745585,	157740199	157740456	157740377	157740377	Nonsense_Mutation	C	T	p.W44*
LUSC	TCGA-18-3409-01	FCRL6	ENST00000321935.6,ENST00000368106.3,ENST00000339348.5	chr1	159777967:159778234:159778750:159779035:159779191:159779212,	159778751	159779035	159778967	159778967	Nonsense_Mutation	G	A	p.W179*
LUSC	TCGA-18-3409-01	PPP1R21	ENST00000449090.2,ENST00000281394.4,ENST00000294952.8	chr2	48678146:48678215:48681733:48681880:48685264:48685366,	48681734	48681880	48681800	48681800	Nonsense_Mutation	C	T	p.R65*
LUSC	TCGA-18-3409-01	PPP1R21	ENST00000416913.1	chr2	48678146:48678215:48681694:48681880:48685264:48685366,	48681695	48681880	48681800	48681800	Nonsense_Mutation	C	T	p.R65*
LUSC	TCGA-18-3409-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113306843:113306976:113308442:113308579:113309351:113309556,	113308443	113308579	113308538	113308538	Nonsense_Mutation	C	T	p.R241*
LUSC	TCGA-18-3409-01	PTPN4	ENST00000263708.2,ENST00000430976.1	chr2	120677644:120677817:120684173:120684242:120689999:120690125,	120684174	120684242	120684190	120684190	Nonsense_Mutation	C	T	p.Q340*
LUSC	TCGA-18-3409-01	TTLL4	ENST00000417855.1	chr2	219617485:219617696:219617843:219617908:219618306:219618392,	219617844	219617908	219617859	219617859	Nonsense_Mutation	G	A	p.W1070*
LUSC	TCGA-18-3409-01	TTLL4	ENST00000436668.1	chr2	219617485:219617696:219617837:219617908:219618306:219618392,219617485:219617570:219617837:219617908:219618306:219618392,	219617838	219617908	219617859	219617859	Nonsense_Mutation	G	A	p.W1070*
LUSC	TCGA-18-3409-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229801	8229801	Nonsense_Mutation	C	T	p.Q794*
LUSC	TCGA-18-3409-01	TBC1D1	ENST00000261439.4,ENST00000510573.2,ENST00000508802.1	chr4	38055819:38055959:38091552:38091738:38097549:38097711,	38091553	38091738	38091726	38091726	Nonsense_Mutation	C	T	p.Q742*
LUSC	TCGA-18-3409-01	FAT1	ENST00000441802.2	chr4	187560875:187560937:187584452:187584767:187627716:187630999,	187584453	187584767	187584747	187584747	Nonsense_Mutation	G	A	p.R1096*
LUSC	TCGA-18-3409-01	BTNL9	ENST00000327705.9,ENST00000376842.3,ENST00000376841.2,ENST00000491209.1	chr5	180467271:180467432:180474926:180475271:180477087:180477369,180472466:180472598:180474926:180475271:180477087:180477369,	180474927	180475271	180475255	180475255	Nonsense_Mutation	G	A	p.W146*
LUSC	TCGA-18-3409-01	FAM49B	ENST00000518879.1	chr8	130867943:130867993:130874474:130874580:130883620:130883742,130867943:130867993:130874474:130874580:130915557:130915596,	130874475	130874580	130874574	130874574	Nonsense_Mutation	G	A	p.Q68*
LUSC	TCGA-18-3409-01	PDCL	ENST00000259467.4	chr9	125580622:125582915:125585294:125585476:125588894:125588965,	125585295	125585476	125585315	125585315	Nonsense_Mutation	G	A	p.Q112*
LUSC	TCGA-18-3409-01	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31137767	31137767	Nonsense_Mutation	G	A	p.R523*
LUSC	TCGA-18-3409-01	ATN1	ENST00000356654.4,ENST00000396684.2	chr12	7047007:7047230:7047643:7048340:7050042:7050186,	7047644	7048340	7048043	7048043	Nonsense_Mutation	C	T	p.R973*
LUSC	TCGA-18-3409-01	MYO1A	ENST00000554234.1,ENST00000544473.1,ENST00000442789.2,ENST00000300119.3	chr12	57437889:57437993:57440335:57440434:57440646:57440710,	57440336	57440434	57440417	57440417	Nonsense_Mutation	G	A	p.R187*
LUSC	TCGA-18-3409-01	CPB2	ENST00000181383.4	chr13	46632313:46632516:46638782:46638876:46648007:46648112,46632313:46632516:46638782:46638876:46641441:46641552,	46638783	46638876	46638865	46638865	Nonsense_Mutation	C	T	p.W238*
LUSC	TCGA-18-3409-01	CPB2	ENST00000181383.4	chr13	46632313:46632516:46638782:46638876:46648007:46648112,46632313:46632516:46638782:46638876:46641441:46641552,	46638783	46638876	46638866	46638866	Nonsense_Mutation	C	T	p.W238*
LUSC	TCGA-18-3409-01	ACTN1	ENST00000193403.6,ENST00000555616.1,ENST00000438964.2,ENST00000376839.3,ENST00000394419.4,ENST00000538545.2	chr14	69358944:69359000:69360371:69360464:69369193:69369279,	69360372	69360464	69360386	69360386	Nonsense_Mutation	T	A	p.K281*
LUSC	TCGA-18-3409-01	USP8	ENST00000433963.1,ENST00000425032.3,ENST00000559329.1,ENST00000396444.3,ENST00000307179.4	chr15	50763829:50763992:50769045:50769190:50769472:50769696,	50769046	50769190	50769124	50769124	Nonsense_Mutation	C	T	p.Q310*
LUSC	TCGA-18-3409-01	USP8	ENST00000560730.1	chr15	50763829:50763992:50769045:50769194:50769472:50769696,	50769046	50769194	50769124	50769124	Nonsense_Mutation	C	T	p.Q310*
LUSC	TCGA-18-3409-01	CEACAM7	ENST00000401731.1	chr19	42187975:42187994:42190789:42191152:42192030:42192096,	42190790	42191152	42191133	42191133	Nonsense_Mutation	C	T	p.W28*
LUSC	TCGA-18-3409-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451163	55451163	Nonsense_Mutation	G	A	p.Q342*
LUSC	TCGA-18-3409-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21346210:21346342:21349100:21349228:21362631:21362695,	21349101	21349228	21349207	21349207	Nonsense_Mutation	C	T	p.Q855*
LUSC	TCGA-18-3409-01	CBS	ENST00000398158.1,ENST00000398168.1,ENST00000488526.1,ENST00000441030.1,ENST00000465732.1,ENST00000352178.5,ENST00000470912.1,ENST00000398165.3,ENST00000359624.3	chr21	44488618:44488725:44492094:44492311:44493375:44493413,	44492095	44492311	44492175	44492175	Nonsense_Mutation	C	T	p.W43*
LUSC	TCGA-18-3410-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115349424:115349556:115350336:115350648:115351952:115352060,	115350337	115350648	115350345	115350345	Nonsense_Mutation	G	A	p.Q1650*
LUSC	TCGA-18-3410-01	PICALM	ENST00000530542.1,ENST00000356360.5,ENST00000393346.3	chr11	85694908:85695016:85701292:85701442:85707868:85707972,	85701293	85701442	85701343	85701343	Nonsense_Mutation	G	C	p.S453*
LUSC	TCGA-18-3410-01	PICALM	ENST00000526961.1,ENST00000526033.1	chr11	85694908:85695016:85701292:85701421:85707868:85707972,	85701293	85701421	85701343	85701343	Nonsense_Mutation	G	C	p.S453*
LUSC	TCGA-18-3411-01	RGS5	ENST00000530507.1,ENST00000525894.1,ENST00000313961.5	chr1	163131743:163131766:163138047:163138158:163172581:163172625,	163138048	163138158	163138133	163138133	Nonsense_Mutation	C	A	p.G24*
LUSC	TCGA-18-3411-01	PPP3CC	ENST00000289963.8,ENST00000240139.5,ENST00000397775.3,ENST00000521651.1,ENST00000518852.1	chr8	22333104:22333137:22368598:22368744:22370805:22370945,22355513:22355625:22368598:22368744:22370805:22370945,	22368599	22368744	22368619	22368619	Nonsense_Mutation	C	T	p.Q169*
LUSC	TCGA-18-3411-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
LUSC	TCGA-18-3411-01	RHBDF2	ENST00000389760.4,ENST00000587640.1,ENST00000591885.1,ENST00000313080.4	chr17	74473261:74473380:74473738:74473867:74474887:74475091,	74473739	74473867	74473789	74473789	Nonsense_Mutation	C	A	p.E280*
LUSC	TCGA-18-3411-01	PRDX4	ENST00000379341.4,ENST00000379331.3	chrX	23685667:23685928:23689645:23689763:23693106:23693223,	23689646	23689763	23689672	23689672	Nonsense_Mutation	G	T	p.G90*
LUSC	TCGA-18-3412-01	CTTN	ENST00000376561.3,ENST00000301843.8,ENST00000529736.1,ENST00000533931.1,ENST00000538675.1,ENST00000393747.2,ENST00000346329.3	chr11	70275227:70275305:70277296:70277386:70279206:70279384,	70277297	70277386	70277370	70277370	Nonsense_Mutation	C	A	p.S417*
LUSC	TCGA-18-3412-01	DYNC1H1	ENST00000360184.4	chr14	102473344:102473445:102474514:102474674:102476179:102476423,	102474515	102474674	102474667	102474667	Nonsense_Mutation	C	A	p.Y1990*
LUSC	TCGA-18-3412-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40660695	40660695	Nonsense_Mutation	C	G	p.S154*
LUSC	TCGA-18-3414-01	POLR2D	ENST00000409955.1	chr2	128608163:128608259:128610498:128610679:128615339:128615523,128605414:128605759:128610498:128610679:128615601:128615691,	128610499	128610679	128610593	128610593	Nonsense_Mutation	C	A	p.E54*
LUSC	TCGA-18-3414-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277716	238277716	Nonsense_Mutation	G	A	p.R1464*
LUSC	TCGA-18-3414-01	GOLIM4	ENST00000470487.1	chr3	167754623:167754782:167758573:167758657:167759179:167759262,	167758574	167758657	167758633	167758633	Nonsense_Mutation	C	A	p.E209*
LUSC	TCGA-18-3414-01	DHX15	ENST00000336812.4	chr4	24572276:24572470:24577865:24578301:24585945:24586160,	24577866	24578301	24578074	24578074	Nonsense_Mutation	G	C	p.S100*
LUSC	TCGA-18-3415-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395298	64395298	Nonsense_Mutation	C	T	p.Q559*
LUSC	TCGA-18-3416-01	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000450950.2	chr3	193182728:193182917:193183813:193183971:193185104:193185137,	193183814	193183971	193183867	193183867	Nonsense_Mutation	C	A	p.G407*
LUSC	TCGA-18-3416-01	C6	ENST00000475349.1,ENST00000337836.5,ENST00000263413.3	chr5	41161794:41161961:41172326:41172449:41176576:41176817,	41172327	41172449	41172358	41172358	Nonsense_Mutation	G	T	p.C420*
LUSC	TCGA-18-3416-01	AGFG2	ENST00000474713.1,ENST00000300176.4	chr7	100148048:100148134:100150969:100151123:100151715:100151881,	100150970	100151123	100151098	100151098	Nonsense_Mutation	C	G	p.S187*
LUSC	TCGA-18-3416-01	ANKRD46	ENST00000519597.1,ENST00000358990.3,ENST00000520552.1,ENST00000335659.3,ENST00000520311.1	chr8	101534741:101534999:101540072:101540231:101541750:101542028,	101540073	101540231	101540109	101540109	Nonsense_Mutation	G	T	p.S145*
LUSC	TCGA-18-3416-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971003	21971003	Nonsense_Mutation	C	A	p.E119*
LUSC	TCGA-18-3416-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971003	21971003	Nonsense_Mutation	C	A	p.E119*
LUSC	TCGA-18-3416-01	COL27A1	ENST00000356083.3,ENST00000494090.2	chr9	116982070:116982124:116984502:116984547:116993358:116993412,	116984503	116984547	116984503	116984503	Nonsense_Mutation	G	T	p.G808_splice
LUSC	TCGA-18-3416-01	TOMM20L	ENST00000360945.2	chr14	58863015:58863059:58869397:58869479:58874043:58874144,	58869398	58869479	58869446	58869446	Nonsense_Mutation	G	T	p.E77*
LUSC	TCGA-18-3416-01	PRC1	ENST00000442656.2,ENST00000557905.1	chr15	91527286:91527370:91527922:91528055:91537636:91537725,91525138:91525211:91527922:91528055:91537636:91537725,	91527923	91528055	91528042	91528042	Nonsense_Mutation	C	A	p.E9*
LUSC	TCGA-18-3417-01	COPG1	ENST00000314797.6,ENST00000515725.1	chr3	128987337:128987463:128987774:128987843:128990609:128990752,	128987775	128987843	128987831	128987831	Nonsense_Mutation	G	T	p.E611*
LUSC	TCGA-18-3417-01	OSBPL2	ENST00000313733.3	chr20	60831112:60831277:60835036:60835181:60838671:60838747,	60835037	60835181	60835156	60835156	Nonsense_Mutation	C	T	p.Q53*
LUSC	TCGA-18-3417-01	OSBPL2	ENST00000358053.2	chr20	60831112:60831277:60835072:60835181:60838671:60838747,	60835073	60835181	60835156	60835156	Nonsense_Mutation	C	T	p.Q53*
LUSC	TCGA-18-3417-01	KDM5D	ENST00000382806.2	chrY	21897506:21897636:21901413:21901548:21903203:21903374,21897506:21897636:21901413:21901548:21903620:21903743,	21901414	21901548	21901521	21901521	Nonsense_Mutation	C	A	p.E184*
LUSC	TCGA-18-3419-01	EIF2B4	ENST00000405940.2	chr2	27590891:27591006:27591238:27591330:27591520:27591594,27590891:27590980:27591238:27591330:27591520:27591594,	27591239	27591330	27591276	27591276	Nonsense_Mutation	G	A	p.Q205*
LUSC	TCGA-18-3419-01	KDR	ENST00000263923.4	chr4	55968528:55968675:55970809:55971151:55971998:55972107,	55970810	55971151	55970835	55970835	Nonsense_Mutation	G	T	p.C654*
LUSC	TCGA-18-3419-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911087	29911087	Nonsense_Mutation	C	A	p.S129*
LUSC	TCGA-18-3419-01	C8orf34	ENST00000521406.1,ENST00000325233.3,ENST00000539993.1,ENST00000518698.1,ENST00000337103.4	chr8	69633595:69633672:69688633:69688684:69699677:69699771,	69688634	69688684	69688634	69688634	Nonsense_Mutation	G	T	p.G469_splice
LUSC	TCGA-18-3419-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998324	144998324	Nonsense_Mutation	C	A	p.E2062*
LUSC	TCGA-18-3419-01	TLE4	ENST00000490347.1	chr9	82319717:82319817:82320803:82320857:82323032:82323077,	82320804	82320857	82320816	82320816	Nonsense_Mutation	G	T	p.E241*
LUSC	TCGA-18-3419-01	USP28	ENST00000537642.1	chr11	113702641:113702715:113704141:113704279:113711319:113711479,	113704142	113704279	113704153	113704153	Nonsense_Mutation	C	A	p.E250*
LUSC	TCGA-18-3419-01	AACS	ENST00000316543.10	chr12	125603186:125603311:125609250:125609570:125612706:125612820,	125609251	125609570	125609519	125609519	Nonsense_Mutation	G	T	p.E420*
LUSC	TCGA-18-3419-01	AACS	ENST00000316519.6,ENST00000538851.1,ENST00000545511.1,ENST00000261686.6	chr12	125609250:125609315:125609447:125609570:125612706:125612820,	125609448	125609570	125609519	125609519	Nonsense_Mutation	G	T	p.E420*
LUSC	TCGA-18-3419-01	MAZ	ENST00000322945.6,ENST00000545521.1,ENST00000219782.6	chr16	29818190:29818214:29818298:29819149:29819550:29819614,	29818299	29819149	29819136	29819136	Nonsense_Mutation	A	T	p.K344*
LUSC	TCGA-18-3419-01	UBE2G1	ENST00000572484.1,ENST00000396981.2,ENST00000571953.1	chr17	4186193:4186216:4192524:4192703:4210315:4210418,4186193:4186216:4192524:4192703:4200011:4200104,	4192525	4192703	4192629	4192629	Nonsense_Mutation	C	A	p.E108*
LUSC	TCGA-18-3419-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248240	44248240	Nonsense_Mutation	C	A	p.E424*
LUSC	TCGA-18-3419-01	RPS19	ENST00000598742.1,ENST00000221975.2,ENST00000593863.1	chr19	42373237:42373284:42373768:42373823:42375418:42375484,	42373769	42373823	42373788	42373788	Nonsense_Mutation	C	T	p.Q126*
LUSC	TCGA-18-3419-01	NLRP5	ENST00000390649.3	chr19	56544907:56545075:56549390:56549561:56552287:56552458,	56549391	56549561	56549482	56549482	Nonsense_Mutation	G	T	p.G903*
LUSC	TCGA-18-3421-01	TMEM40	ENST00000435575.1,ENST00000435218.2,ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12779634:12779667:12780051:12780087:12783952:12784006,	12780052	12780087	12780076	12780076	Nonsense_Mutation	C	A	p.E139*
LUSC	TCGA-18-3421-01	TKT	ENST00000462138.1,ENST00000423525.2,ENST00000472528.1,ENST00000296289.6,ENST00000423516.1,ENST00000487660.1,ENST00000469678.1,ENST00000450814.2	chr3	53274266:53274364:53275147:53275261:53276140:53276215,	53275148	53275261	53275207	53275207	Nonsense_Mutation	C	A	p.E94*
LUSC	TCGA-18-3421-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000397991.4,ENST00000317104.7,ENST00000489671.1,ENST00000467072.1,ENST00000479040.1,ENST00000486111.1,ENST00000495310.1,ENST00000310282.6,ENST00000467667.1,ENST00000477292.1	chr3	141678641:141678682:141682653:141682805:141688914:141688983,	141682654	141682805	141682763	141682763	Nonsense_Mutation	C	A	p.E259*
LUSC	TCGA-18-3421-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717678	89717678	Nonsense_Mutation	G	T	p.E235*
LUSC	TCGA-18-3421-01	CTSF	ENST00000310325.5,ENST00000527141.1,ENST00000524994.1	chr11	66332357:66332477:66333141:66333222:66333301:66333398,	66333142	66333222	66333159	66333159	Nonsense_Mutation	G	T	p.S343*
LUSC	TCGA-18-3421-01	CTSF	ENST00000525733.1	chr11	66332357:66332477:66333141:66333220:66333301:66333398,	66333142	66333220	66333159	66333159	Nonsense_Mutation	G	T	p.S343*
LUSC	TCGA-18-3421-01	EAPP	ENST00000250454.3,ENST00000555705.1,ENST00000554792.1	chr14	34998563:34998681:35002649:35002745:35005299:35005481,	35002650	35002745	35002668	35002668	Nonsense_Mutation	C	A	p.E112*
LUSC	TCGA-18-3421-01	CYP46A1	ENST00000261835.3	chr14	100150650:100150873:100157417:100157498:100158116:100158198,	100157418	100157498	100157448	100157448	Nonsense_Mutation	G	A	p.W50*
LUSC	TCGA-18-3421-01	DYNC1H1	ENST00000360184.4,ENST00000555204.1	chr14	102486370:102486393:102489087:102489217:102492910:102493044,	102489088	102489217	102489101	102489101	Nonsense_Mutation	G	T	p.E2841*
LUSC	TCGA-18-3421-01	LAMA3	ENST00000588004.1	chr18	21529992:21530123:21531647:21531741:21532953:21533073,21529992:21530123:21531647:21531741:21534466:21534612,	21531648	21531741	21531685	21531685	Nonsense_Mutation	C	A	p.S3227*
LUSC	TCGA-18-3421-01	PAF1	ENST00000595797.1,ENST00000221265.3	chr19	39880279:39880401:39880708:39880801:39880899:39880929,	39880709	39880801	39880797	39880797	Nonsense_Mutation	C	A	p.G28*
LUSC	TCGA-18-3421-01	CELSR1	ENST00000262738.3,ENST00000473624.1	chr22	46759892:46760148:46760408:46760633:46761127:46761277,	46760409	46760633	46760592	46760592	Nonsense_Mutation	G	A	p.Q2866*
LUSC	TCGA-18-3421-01	KIF4A	ENST00000374403.3	chrX	69626108:69626204:69626742:69626925:69637737:69637854,	69626743	69626925	69626794	69626794	Nonsense_Mutation	G	T	p.E1042*
LUSC	TCGA-18-4083-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539651	187539651	Nonsense_Mutation	C	A	p.E2697*
LUSC	TCGA-18-4083-01	TNC	ENST00000535648.1,ENST00000341037.4,ENST00000544972.1	chr9	117804497:117804620:117808688:117808961:117835881:117835920,117804497:117804620:117808688:117808961:117815018:117815294,117804497:117804620:117808688:117808961:117810538:117810811,117804497:117804620:117808688:117808961:117819431:117819580,	117808689	117808961	117808740	117808740	Nonsense_Mutation	C	A	p.G1692*
LUSC	TCGA-18-4083-01	METTL17	ENST00000339374.6,ENST00000553441.1,ENST00000553536.1,ENST00000557701.1,ENST00000382985.4,ENST00000554985.1,ENST00000554283.1,ENST00000556670.2	chr14	21458188:21458421:21458622:21458757:21460282:21460363,21458388:21458542:21458622:21458757:21460250:21460352,21458388:21458542:21458622:21458757:21460282:21460363,	21458623	21458757	21458712	21458712	Nonsense_Mutation	C	T	p.Q107*
LUSC	TCGA-18-4083-01	LAIR2	ENST00000351841.2	chr19	55014915:55014951:55019105:55019399:55021735:55021897,	55019106	55019399	55019216	55019216	Nonsense_Mutation	G	T	p.E61*
LUSC	TCGA-18-4083-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903529	5903529	Nonsense_Mutation	G	T	p.E247*
LUSC	TCGA-18-4083-01	PTPRT	ENST00000373198.4,ENST00000373187.1,ENST00000356100.2,ENST00000373193.3,ENST00000373201.1,ENST00000373184.1,ENST00000373190.1	chr20	41306505:41306799:41385101:41385276:41400074:41400190,	41385102	41385276	41385102	41385102	Nonsense_Mutation	C	A	p.E287_splice
LUSC	TCGA-18-4083-01	FAM19A5	ENST00000358295.5,ENST00000402357.1	chr22	49042408:49042558:49103528:49103656:49145650:49146220,	49103529	49103656	49103557	49103557	Nonsense_Mutation	T	A	p.C97*
LUSC	TCGA-18-4083-01	CASK	ENST00000378166.4,ENST00000378154.1,ENST00000378163.1,ENST00000378158.1,ENST00000361962.4,ENST00000421587.2,ENST00000318588.9,ENST00000442742.2	chrX	41485856:41485956:41495830:41495914:41519691:41519814,	41495831	41495914	41495833	41495833	Nonsense_Mutation	T	A	p.K120*
LUSC	TCGA-18-4086-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168108097	168108097	Nonsense_Mutation	G	T	p.E3399*
LUSC	TCGA-18-4086-01	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682280	108682280	Nonsense_Mutation	A	T	p.L927*
LUSC	TCGA-18-4086-01	SLC52A3	ENST00000381944.3	chr20	744141:744647:745851:746469:748940:749126,	745852	746469	746322	746322	Nonsense_Mutation	C	A	p.E33*
LUSC	TCGA-18-4721-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078706	117078706	Nonsense_Mutation	G	C	p.S170*
LUSC	TCGA-18-4721-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225371574:225371720:225376070:225376299:225378240:225378355,	225376071	225376299	225376242	225376242	Nonsense_Mutation	C	A	p.E244*
LUSC	TCGA-18-4721-01	ATG7	ENST00000354449.3	chr3	11421445:11421526:11468277:11468400:11596284:11596462,	11468278	11468400	11468389	11468389	Nonsense_Mutation	C	T	p.Q690*
LUSC	TCGA-18-4721-01	ARL1	ENST00000536227.1,ENST00000551828.1,ENST00000551092.1,ENST00000551671.1,ENST00000261636.8,ENST00000539055.1	chr12	101790317:101790355:101794839:101794951:101796642:101796724,	101794840	101794951	101794928	101794928	Nonsense_Mutation	G	C	p.S83*
LUSC	TCGA-18-4721-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21859105:21859222:21859621:21859801:21859991:21860105,	21859622	21859801	21859633	21859633	Nonsense_Mutation	G	A	p.R2352*
LUSC	TCGA-18-5592-01	HSPBAP1	ENST00000306103.2,ENST00000465044.1,ENST00000467643.1	chr3	122487547:122487729:122496567:122496753:122512463:122512507,	122496568	122496753	122496727	122496727	Nonsense_Mutation	C	A	p.E31*
LUSC	TCGA-18-5595-01	LRIG2	ENST00000466161.1,ENST00000361127.5,ENST00000492207.1	chr1	113658908:113659058:113661854:113662145:113666496:113667619,	113661855	113662145	113661920	113661920	Nonsense_Mutation	C	T	p.R916*
LUSC	TCGA-18-5595-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225371574:225371720:225376070:225376299:225378240:225378355,	225376071	225376299	225376190	225376190	Nonsense_Mutation	G	C	p.S261*
LUSC	TCGA-18-5595-01	IFT122	ENST00000431818.2,ENST00000511425.1,ENST00000512220.1,ENST00000296266.3,ENST00000506507.1,ENST00000347300.2,ENST00000440957.2,ENST00000348417.2	chr3	129225251:129225392:129226510:129226605:129231154:129231255,	129226511	129226605	129226555	129226555	Nonsense_Mutation	C	T	p.Q997*
LUSC	TCGA-18-5595-01	IFT122	ENST00000507564.1,ENST00000504021.1,ENST00000349441.2	chr3	129225251:129225392:129226507:129226605:129231154:129231255,	129226508	129226605	129226555	129226555	Nonsense_Mutation	C	T	p.Q997*
LUSC	TCGA-18-5595-01	ZMYM5	ENST00000382905.4,ENST00000337963.4,ENST00000502168.2,ENST00000467542.1	chr13	20411795:20411961:20412839:20413125:20425494:20425588,	20412840	20413125	20413087	20413087	Nonsense_Mutation	G	A	p.Q209*
LUSC	TCGA-18-5595-01	HEXA	ENST00000567159.1,ENST00000568777.1,ENST00000567411.1,ENST00000569410.1,ENST00000268097.5,ENST00000457859.2,ENST00000566304.1,ENST00000567027.1	chr15	72642920:72642991:72643473:72643575:72645408:72645519,	72643474	72643575	72643537	72643537	Nonsense_Mutation	C	T	p.W203*
LUSC	TCGA-18-5595-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77473983	77473983	Nonsense_Mutation	C	A	p.E96*
LUSC	TCGA-18-5595-01	BAIAP3	ENST00000397488.2,ENST00000421665.2,ENST00000426824.3,ENST00000397489.1,ENST00000568887.1,ENST00000568198.1,ENST00000562208.1,ENST00000324385.5	chr16	1394469:1394526:1394601:1394699:1394798:1394850,	1394602	1394699	1394611	1394611	Nonsense_Mutation	C	T	p.Q592*
LUSC	TCGA-18-5595-01	SKA1	ENST00000398452.2,ENST00000285116.3,ENST00000417656.2	chr18	47902189:47902288:47906495:47906620:47908498:47908596,	47906496	47906620	47906588	47906588	Nonsense_Mutation	C	T	p.Q61*
LUSC	TCGA-21-1070-01	MLPH	ENST00000434770.1	chr2	238457863:238457921:238460979:238461080:238462331:238462634,	238460980	238461080	238461036	238461036	Nonsense_Mutation	A	T	p.R578*
LUSC	TCGA-21-1070-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51875106:51875257:51882207:51882427:51887598:51887742,	51882208	51882427	51882241	51882241	Nonsense_Mutation	G	T	p.S1856*
LUSC	TCGA-21-1070-01	CLPTM1	ENST00000588855.1,ENST00000589158.1,ENST00000546079.1,ENST00000541297.2,ENST00000337392.5	chr19	45488475:45488561:45489712:45489833:45490436:45490648,	45489713	45489833	45489737	45489737	Nonsense_Mutation	G	T	p.E233*
LUSC	TCGA-21-1070-01	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819581	20819581	Nonsense_Mutation	G	A	p.Q226*
LUSC	TCGA-21-1076-01	UMPS	ENST00000462091.1,ENST00000460034.1,ENST00000536109.1,ENST00000487622.1,ENST00000232607.2,ENST00000474588.1,ENST00000467167.1,ENST00000538242.1	chr3	124456977:124457086:124458870:124459046:124460998:124461113,	124458871	124459046	124458954	124458954	Nonsense_Mutation	G	T	p.E356*
LUSC	TCGA-21-1076-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86416062	86416062	Nonsense_Mutation	C	A	p.Y318*
LUSC	TCGA-21-1076-01	CCDC144A	ENST00000360495.5,ENST00000360524.8,ENST00000340621.5,ENST00000443444.2,ENST00000399273.1	chr17	16610782:16610856:16612109:16612949:16614992:16615129,	16612110	16612949	16612188	16612188	Nonsense_Mutation	C	T	p.Q273*
LUSC	TCGA-21-1077-01	PIGG	ENST00000310340.5,ENST00000383028.4,ENST00000296306.7,ENST00000453061.2,ENST00000504346.1	chr4	515678:515730:517247:517702:520827:521019,	517248	517702	517609	517609	Nonsense_Mutation	G	A	p.W659*
LUSC	TCGA-21-1077-01	ANKRD7	ENST00000357099.4,ENST00000417525.1,ENST00000433239.1,ENST00000477532.1,ENST00000265224.4	chr7	117874484:117874599:117874754:117874928:117876094:117876201,	117874755	117874928	117874896	117874896	Nonsense_Mutation	G	T	p.E146*
LUSC	TCGA-21-1077-01	PCDH15	ENST00000463095.1,ENST00000320301.6,ENST00000448885.1,ENST00000437009.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55616934:55617023:55626401:55626617:55663002:55663130,	55626402	55626617	55626539	55626539	Nonsense_Mutation	C	A	p.G1199*
LUSC	TCGA-21-1078-01	IFI16	ENST00000430894.2,ENST00000368131.4,ENST00000359709.3,ENST00000295809.7,ENST00000493884.1	chr1	158990130:158990319:159002313:159002481:159015086:159015254,	159002314	159002481	159002320	159002320	Nonsense_Mutation	A	T	p.K390*
LUSC	TCGA-21-1078-01	ATP13A5	ENST00000342358.4	chr3	193036779:193036897:193039469:193039626:193040279:193040363,	193039470	193039626	193039551	193039551	Nonsense_Mutation	G	A	p.Q612*
LUSC	TCGA-21-1078-01	THBS2	ENST00000366787.3	chr6	169633001:169633112:169634828:169635002:169637264:169637441,	169634829	169635002	169634881	169634881	Nonsense_Mutation	G	T	p.C533*
LUSC	TCGA-21-1081-01	CLPTM1L	ENST00000503042.1,ENST00000507807.1,ENST00000503151.1,ENST00000505605.1,ENST00000320895.5,ENST00000320927.6,ENST00000503534.1,ENST00000507195.1,ENST00000506641.1	chr5	1322991:1323026:1323901:1323984:1324877:1324914,	1323902	1323984	1323906	1323906	Nonsense_Mutation	T	A	p.K426*
LUSC	TCGA-21-1081-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820624	3820624	Nonsense_Mutation	G	A	p.Q943*
LUSC	TCGA-21-5782-01	IPP	ENST00000396478.3	chr1	46206572:46207004:46211791:46212133:46216268:46216321,	46211792	46212133	46211819	46211819	Nonsense_Mutation	G	A	p.Q89*
LUSC	TCGA-21-5782-01	NAA30	ENST00000556492.1	chr14	57857305:57857423:57857674:57858446:57863469:57863593,	57857675	57858446	57857946	57857946	Nonsense_Mutation	G	T	p.E91*
LUSC	TCGA-21-5782-01	NUP93	ENST00000566678.1,ENST00000562496.1,ENST00000566315.1,ENST00000568656.1,ENST00000308159.5,ENST00000569842.1	chr16	56764060:56764123:56792449:56792567:56832387:56832450,56782260:56782338:56792449:56792567:56832387:56832450,	56792450	56792567	56792532	56792532	Nonsense_Mutation	G	T	p.E88*
LUSC	TCGA-21-5784-01	PYHIN1	ENST00000392252.3,ENST00000368138.3,ENST00000368140.1,ENST00000392254.2	chr1	158908213:158908332:158908869:158909037:158911766:158912189,	158908870	158909037	158908927	158908927	Nonsense_Mutation	G	T	p.E157*
LUSC	TCGA-21-5784-01	NCSTN	ENST00000421914.1,ENST00000535857.1,ENST00000437169.1	chr1	160313182:160313271:160314511:160314616:160318788:160318912,	160314512	160314616	160314557	160314557	Nonsense_Mutation	T	A	p.L44*
LUSC	TCGA-21-5784-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91*
LUSC	TCGA-21-5784-01	IL9R	ENST00000540897.1,ENST00000244174.5,ENST00000424344.3,ENST00000369423.2	chrX	155234113:155234230:155234942:155235144:155235747:155235853,	155234943	155235144	155235072	155235072	Nonsense_Mutation	G	T	p.E237*
LUSC	TCGA-21-5786-01	COL11A1	ENST00000353414.4,ENST00000358392.2,ENST00000427239.1,ENST00000370096.3	chr1	103487262:103487325:103488297:103488552:103491076:103491169,	103488298	103488552	103488510	103488510	Nonsense_Mutation	C	A	p.G357*
LUSC	TCGA-21-5786-01	ZNF333	ENST00000596285.1,ENST00000601629.1,ENST00000598161.1,ENST00000597301.1,ENST00000292530.6,ENST00000597007.1,ENST00000540689.2,ENST00000392987.3,ENST00000536363.1	chr19	14804262:14804306:14805821:14805945:14806377:14806473,	14805822	14805945	14805852	14805852	Nonsense_Mutation	G	T	p.E12*
LUSC	TCGA-21-5787-01	FMO4	ENST00000475780.1	chr1	171288956:171289096:171292142:171292331:171293276:171293439,171288956:171289096:171292142:171292331:171306494:171306562,	171292143	171292331	171292329	171292329	Nonsense_Mutation	A	T	p.K107*
LUSC	TCGA-21-5787-01	VSNL1	ENST00000295156.4	chr2	17721973:17722185:17773336:17773503:17830676:17830827,	17773337	17773503	17773402	17773402	Nonsense_Mutation	G	T	p.E21*
LUSC	TCGA-21-5787-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151770573:151770727:151771875:151772054:151773036:151774095,	151771876	151772054	151771880	151771880	Nonsense_Mutation	T	A	p.R1334*
LUSC	TCGA-21-5787-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72863871:72864019:72865176:72865324:72873865:72874048,	72865177	72865324	72865210	72865210	Nonsense_Mutation	C	A	p.E1183*
LUSC	TCGA-21-5787-01	IL7	ENST00000519833.1,ENST00000520317.1,ENST00000518982.1,ENST00000263851.4	chr8	79648708:79648762:79650738:79650870:79652236:79652311,	79650739	79650870	79650857	79650857	Nonsense_Mutation	A	T	p.L81*
LUSC	TCGA-21-5787-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139609146:139609213:139610961:139611141:139614357:139614402,	139610962	139611141	139611078	139611078	Nonsense_Mutation	C	A	p.G1417*
LUSC	TCGA-21-5787-01	USP30	ENST00000392784.2,ENST00000377883.3,ENST00000257548.5	chr12	109519737:109519824:109520467:109520548:109520647:109520722,	109520468	109520548	109520495	109520495	Nonsense_Mutation	G	T	p.E299*
LUSC	TCGA-21-5787-01	MAP2K3	ENST00000526076.2,ENST00000395491.2,ENST00000342679.4,ENST00000496046.1,ENST00000316920.6,ENST00000361818.5	chr17	21203856:21203970:21204185:21204305:21205454:21205571,	21204186	21204305	21204287	21204287	Nonsense_Mutation	C	G	p.Y127*
LUSC	TCGA-21-5787-01	ALDH16A1	ENST00000433981.2,ENST00000593417.1	chr19	49956555:49956678:49962926:49963105:49964078:49964156,	49962927	49963105	49962966	49962966	Nonsense_Mutation	G	A	p.W120*
LUSC	TCGA-21-5787-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903358	5903358	Nonsense_Mutation	G	T	p.E190*
LUSC	TCGA-22-0944-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048314	42048314	Nonsense_Mutation	T	A	p.K719*
LUSC	TCGA-22-1002-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390731	197390731	Nonsense_Mutation	C	A	p.C591*
LUSC	TCGA-22-1002-01	IRF6	ENST00000542854.1	chr1	209968634:209968763:209969692:209969897:209974584:209974761,209968634:209968763:209969692:209969897:209979291:209979389,	209969693	209969897	209969720	209969720	Nonsense_Mutation	G	A	p.Q118*
LUSC	TCGA-22-1002-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363259	108363259	Nonsense_Mutation	C	T	p.Q464*
LUSC	TCGA-22-1002-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469888	21469888	Nonsense_Mutation	G	T	p.E369*
LUSC	TCGA-22-1002-01	HYDIN	ENST00000393567.2	chr16	70900071:70900232:70902472:70902691:70905939:70906082,	70902473	70902691	70902522	70902522	Nonsense_Mutation	C	T	p.W3753*
LUSC	TCGA-22-1011-01	DAB2	ENST00000320816.6	chr5	39381555:39381718:39382719:39383373:39388406:39388469,	39382720	39383373	39383250	39383250	Nonsense_Mutation	G	A	p.Q271*
LUSC	TCGA-22-1011-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3	chr10	34690753:34690845:34759012:34759191:34805906:34806087,34739244:34739376:34759012:34759191:34805906:34806087,	34759013	34759191	34759074	34759074	Nonsense_Mutation	G	C	p.S174*
LUSC	TCGA-22-1011-01	KCTD10	ENST00000537165.1	chr12	109895434:109895487:109895796:109895886:109898440:109898610,	109895797	109895886	109895804	109895804	Nonsense_Mutation	G	T	p.S165*
LUSC	TCGA-22-1011-01	KCTD10	ENST00000542858.1	chr12	109895434:109895487:109895796:109895853:109898440:109898610,	109895797	109895853	109895804	109895804	Nonsense_Mutation	G	T	p.S165*
LUSC	TCGA-22-1011-01	KCTD10	ENST00000538161.1,ENST00000540411.1,ENST00000228495.6	chr12	109895434:109895487:109895796:109895883:109898440:109898610,	109895797	109895883	109895804	109895804	Nonsense_Mutation	G	T	p.S165*
LUSC	TCGA-22-1011-01	KCTD10	ENST00000541077.1	chr12	109895434:109895487:109895796:109895989:109898440:109898610,	109895797	109895989	109895804	109895804	Nonsense_Mutation	G	T	p.S165*
LUSC	TCGA-22-1011-01	MYO9A	ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000567560.1	chr15	72324834:72324929:72338064:72338975:72410020:72410109,	72338065	72338975	72338533	72338533	Nonsense_Mutation	C	T	p.W124*
LUSC	TCGA-22-1012-01	CHIT1	ENST00000255427.3,ENST00000484834.1,ENST00000367229.1,ENST00000535569.1,ENST00000503786.1,ENST00000491855.1	chr1	203188409:203188457:203188791:203188977:203191329:203191438,	203188792	203188977	203188958	203188958	Nonsense_Mutation	C	T	p.W250*
LUSC	TCGA-22-1012-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541367	187541367	Nonsense_Mutation	C	A	p.E2125*
LUSC	TCGA-22-1012-01	CD44	ENST00000449691.2	chr11	35226063:35226187:35227658:35227790:35229651:35229711,35223225:35223334:35227658:35227790:35229651:35229711,	35227659	35227790	35227749	35227749	Nonsense_Mutation	C	G	p.S458*
LUSC	TCGA-22-1012-01	CD44	ENST00000526553.1	chr11	35226063:35226187:35227661:35227790:35229651:35229711,	35227662	35227790	35227749	35227749	Nonsense_Mutation	C	G	p.S458*
LUSC	TCGA-22-1012-01	SERPINB13	ENST00000269489.5,ENST00000344731.5	chr18	61259581:61259710:61260087:61260205:61261259:61261472,61259581:61259710:61260087:61260205:61261588:61261731,	61260088	61260205	61260205	61260205	Nonsense_Mutation	G	T	p.E167_splice
LUSC	TCGA-22-1016-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128028911:128029029:128030440:128030537:128036748:128036951,	128030441	128030537	128030506	128030506	Nonsense_Mutation	C	A	p.E588*
LUSC	TCGA-22-1016-01	GAK	ENST00000511163.1,ENST00000314167.4,ENST00000509566.1,ENST00000510799.1	chr4	845640:845762:853393:853510:858909:859032,	853394	853510	853487	853487	Nonsense_Mutation	G	A	p.Q1064*
LUSC	TCGA-22-1016-01	KIF25	ENST00000443060.2,ENST00000351261.3,ENST00000354419.2	chr6	168418652:168418720:168430171:168430357:168431452:168431527,	168430172	168430357	168430290	168430290	Nonsense_Mutation	C	T	p.Q9*
LUSC	TCGA-22-1016-01	CNOT3	ENST00000482247.1,ENST00000457463.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000496327.1,ENST00000221232.5	chr19	54655962:54656062:54656164:54656363:54656603:54656736,	54656165	54656363	54656311	54656311	Nonsense_Mutation	G	T	p.E618*
LUSC	TCGA-22-4591-01	EPHA3	ENST00000336596.2	chr3	89499326:89499520:89521613:89521769:89528546:89528809,	89521614	89521769	89521680	89521680	Nonsense_Mutation	G	A	p.W919*
LUSC	TCGA-22-4591-01	AP1S1	ENST00000443943.1	chr7	100797763:100797798:100799874:100800053:100800657:100800766,	100799875	100800053	100799995	100799995	Nonsense_Mutation	C	T	p.R42*
LUSC	TCGA-22-4591-01	PLVAP	ENST00000252590.4	chr19	17471580:17471641:17476094:17476807:17476907:17476960,	17476095	17476807	17476369	17476369	Nonsense_Mutation	G	C	p.S302*
LUSC	TCGA-22-4591-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210539	37210539	Nonsense_Mutation	G	T	p.G305*
LUSC	TCGA-22-4593-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472963	77472963	Nonsense_Mutation	C	A	p.E436*
LUSC	TCGA-22-4595-01	C2orf76	ENST00000334816.7,ENST00000409466.2,ENST00000409877.1,ENST00000409523.1	chr2	120060019:120060124:120069197:120069279:120075041:120075079,	120069198	120069279	120069255	120069255	Nonsense_Mutation	C	A	p.E83*
LUSC	TCGA-22-4595-01	TYW1	ENST00000359626.5,ENST00000361660.4	chr7	66482839:66483130:66489886:66490009:66514935:66515053,	66489887	66490009	66490007	66490007	Nonsense_Mutation	A	T	p.K328*
LUSC	TCGA-22-4595-01	ADARB2	ENST00000381312.1	chr10	1230800:1230979:1245905:1246087:1262890:1263059,	1245906	1246087	1245948	1245948	Nonsense_Mutation	G	A	p.Q608*
LUSC	TCGA-22-4595-01	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000433979.1	chr12	18699256:18699366:18715636:18715826:18716310:18716432,	18715637	18715826	18715656	18715656	Nonsense_Mutation	G	T	p.E1163*
LUSC	TCGA-22-4599-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1,ENST00000421462.1,ENST00000426248.3	chr2	159497138:159497271:159498997:159499211:159514642:159514826,	159498998	159499211	159499163	159499163	Nonsense_Mutation	C	T	p.R621*
LUSC	TCGA-22-4599-01	NMU	ENST00000505262.1	chr4	56466688:56466742:56471441:56471516:56473464:56473494,56466688:56466742:56471441:56471516:56473603:56473633,56466688:56466742:56471441:56471516:56475286:56475346,	56471442	56471516	56471492	56471492	Nonsense_Mutation	G	A	p.Q129*
LUSC	TCGA-22-4599-01	SOX6	ENST00000316399.6,ENST00000396356.3	chr11	16007810:16007966:16010542:16010716:16036487:16036596,	16010543	16010716	16010543	16010543	Nonsense_Mutation	C	A	p.G669_splice
LUSC	TCGA-22-4599-01	SOX6	ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000527840.1,ENST00000352083.6	chr11	16007810:16007966:16010542:16010776:16036487:16036596,	16010543	16010776	16010543	16010543	Nonsense_Mutation	C	A	p.G669_splice
LUSC	TCGA-22-4599-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42360908	42360908	Nonsense_Mutation	C	A	p.S614*
LUSC	TCGA-22-4599-01	CATSPERG	ENST00000410018.1	chr19	38845349:38845487:38847123:38847183:38848917:38848968,	38847124	38847183	38847171	38847171	Nonsense_Mutation	G	T	p.E395*
LUSC	TCGA-22-4601-01	NTRK1	ENST00000530298.1	chr1	156844697:156844800:156845311:156846002:156846191:156846364,	156845312	156846002	156845973	156845973	Nonsense_Mutation	G	T	p.E535*
LUSC	TCGA-22-4601-01	SPICE1	ENST00000295872.4	chr3	113166884:113166987:113169182:113169363:113172312:113172797,	113169183	113169363	113169255	113169255	Nonsense_Mutation	G	A	p.Q751*
LUSC	TCGA-22-4604-01	TCN1	ENST00000257264.3,ENST00000532419.1	chr11	59630054:59630195:59631379:59631559:59633864:59633944,	59631380	59631559	59631502	59631502	Nonsense_Mutation	G	T	p.S46*
LUSC	TCGA-22-4604-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
LUSC	TCGA-22-4604-01	DUSP9	ENST00000370167.4,ENST00000342782.3	chrX	152913372:152913780:152914686:152915142:152915434:152916773,	152914687	152915142	152915069	152915069	Nonsense_Mutation	C	A	p.Y252*
LUSC	TCGA-22-4607-01	SPATA6	ENST00000371843.3	chr1	48764319:48764565:48771458:48771550:48821341:48821441,48764319:48764565:48771458:48771550:48821389:48821441,	48771459	48771550	48771547	48771547	Nonsense_Mutation	C	A	p.E400*
LUSC	TCGA-22-4613-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521483	46521483	Nonsense_Mutation	G	A	p.R355*
LUSC	TCGA-22-4613-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305106	27305106	Nonsense_Mutation	C	T	p.Q223*
LUSC	TCGA-22-4613-01	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119892158:119892317:119899971:119900208:119904145:119904241,	119899972	119900208	119900054	119900054	Nonsense_Mutation	C	T	p.W284*
LUSC	TCGA-22-4613-01	BRPF3	ENST00000357641.6,ENST00000339717.7,ENST00000449261.2,ENST00000534400.1,ENST00000441123.1,ENST00000532330.1,ENST00000534694.1,ENST00000543502.1,ENST00000443324.2	chr6	36168182:36169547:36172434:36172591:36175089:36175125,	36172435	36172591	36172574	36172574	Nonsense_Mutation	C	T	p.Q530*
LUSC	TCGA-22-4613-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830138	61830138	Nonsense_Mutation	G	A	p.Q3501*
LUSC	TCGA-22-4613-01	ROBO3	ENST00000543966.1	chr11	124747414:124747648:124747832:124748027:124748193:124748332,124747414:124747554:124747832:124748027:124748193:124748332,124747414:124747554:124747832:124748027:124748479:124748609,	124747833	124748027	124748011	124748011	Nonsense_Mutation	G	A	p.W1055*
LUSC	TCGA-22-4613-01	ROBO3	ENST00000529658.1	chr11	124746770:124746828:124747414:124748027:124748193:124748332,	124747415	124748027	124748011	124748011	Nonsense_Mutation	G	A	p.W1055*
LUSC	TCGA-22-4613-01	ALG12	ENST00000330817.6	chr22	50304081:50304255:50307032:50307165:50307251:50307491,	50307033	50307165	50307063	50307063	Nonsense_Mutation	C	A	p.E89*
LUSC	TCGA-22-5471-01	SELP	ENST00000426706.2,ENST00000263686.6	chr1	169578741:169578927:169580729:169580915:169581454:169581640,	169580730	169580915	169580755	169580755	Nonsense_Mutation	C	T	p.W374*
LUSC	TCGA-22-5471-01	REG3G	ENST00000393897.2,ENST00000272324.5	chr2	79253838:79253957:79254159:79254297:79254932:79255059,	79254160	79254297	79254172	79254172	Nonsense_Mutation	A	T	p.K70*
LUSC	TCGA-22-5471-01	USP54	ENST00000339859.4,ENST00000394811.2,ENST00000408019.1,ENST00000428547.1	chr10	75277271:75277505:75279554:75279750:75283340:75283508,75277271:75277505:75279554:75279750:75280665:75280785,	75279555	75279750	75279616	75279616	Nonsense_Mutation	G	A	p.Q873*
LUSC	TCGA-22-5471-01	IGHMBP2	ENST00000255078.3	chr11	68685203:68685351:68696650:68696825:68700766:68700849,	68696651	68696825	68696686	68696686	Nonsense_Mutation	G	T	p.E366*
LUSC	TCGA-22-5471-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450481	85450481	Nonsense_Mutation	C	A	p.S637*
LUSC	TCGA-22-5472-01	DPPA4	ENST00000478791.1,ENST00000463966.1	chr3	109050793:109050878:109052716:109052840:109056310:109056362,	109052717	109052840	109052821	109052821	Nonsense_Mutation	G	T	p.S25*
LUSC	TCGA-22-5472-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187517903	187517903	Nonsense_Mutation	G	T	p.S4264*
LUSC	TCGA-22-5472-01	FAT1	ENST00000441802.2	chr4	187560875:187560937:187584452:187584767:187627716:187630999,	187584453	187584767	187584459	187584459	Nonsense_Mutation	T	A	p.K1192*
LUSC	TCGA-22-5472-01	ROS1	ENST00000368507.3,ENST00000368508.3	chr6	117609462:117609965:117622136:117622300:117629956:117630091,	117622137	117622300	117622242	117622242	Nonsense_Mutation	T	A	p.R2210*
LUSC	TCGA-22-5472-01	CSMD3	ENST00000343508.3,ENST00000297405.5,ENST00000352409.3	chr8	113966912:113966990:113988065:113988377:114031295:114031408,	113988066	113988377	113988090	113988090	Nonsense_Mutation	C	A	p.E440*
LUSC	TCGA-22-5472-01	STIM1	ENST00000533343.1,ENST00000527651.1,ENST00000526596.1,ENST00000533977.1,ENST00000300737.4	chr11	4103434:4103581:4104111:4104212:4104492:4104728,	4104112	4104212	4104115	4104115	Nonsense_Mutation	G	T	p.E381*
LUSC	TCGA-22-5472-01	MYO5A	ENST00000399231.3,ENST00000358212.6,ENST00000399229.2,ENST00000399233.2,ENST00000356338.6,ENST00000553916.1	chr15	52620048:52620203:52622549:52622696:52628659:52628753,	52622550	52622696	52622577	52622577	Nonsense_Mutation	G	A	p.Q1485*
LUSC	TCGA-22-5472-01	CELF4	ENST00000591287.1,ENST00000361795.5,ENST00000412753.1,ENST00000603232.1,ENST00000420428.2,ENST00000591282.1,ENST00000590112.1,ENST00000601019.1	chr18	34833817:34833901:34839143:34839227:34844636:34844717,	34839144	34839227	34839189	34839189	Nonsense_Mutation	G	A	p.Q430*
LUSC	TCGA-22-5472-01	CELF4	ENST00000589386.1	chr18	34833817:34833901:34839083:34839227:34844636:34844717,	34839084	34839227	34839189	34839189	Nonsense_Mutation	G	A	p.Q430*
LUSC	TCGA-22-5473-01	THNSL2	ENST00000324166.5,ENST00000358591.2	chr2	88482466:88482592:88484846:88484998:88485416:88485749,	88484847	88484998	88484972	88484972	Nonsense_Mutation	C	A	p.Y401*
LUSC	TCGA-22-5473-01	VWA3B	ENST00000416277.1,ENST00000433678.1,ENST00000409460.1,ENST00000477737.1,ENST00000432242.1,ENST00000435344.1,ENST00000422503.2,ENST00000451075.2	chr2	98737761:98737921:98744701:98744871:98750286:98750360,	98744702	98744871	98744741	98744741	Nonsense_Mutation	G	T	p.E248*
LUSC	TCGA-22-5473-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102452361:102452440:102456280:102456456:102459070:102459143,	102456281	102456456	102456381	102456381	Nonsense_Mutation	C	T	p.Q292*
LUSC	TCGA-22-5473-01	RND3	ENST00000263895.4,ENST00000439275.1,ENST00000454202.1	chr2	151331388:151331498:151343207:151343295:151343781:151343967,	151343208	151343295	151343232	151343232	Nonsense_Mutation	C	A	p.E72*
LUSC	TCGA-22-5473-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190532308	190532308	Nonsense_Mutation	C	T	p.Q484*
LUSC	TCGA-22-5473-01	ASNSD1	ENST00000606910.1	chr2	190530147:190530177:190531921:190532322:190532489:190532607,	190531922	190532322	190532308	190532308	Nonsense_Mutation	C	T	p.Q484*
LUSC	TCGA-22-5473-01	SF3B1	ENST00000414174.1	chr2	198285752:198285857:198288617:198288698:198299695:198299740,	198288618	198288698	198288681	198288681	Nonsense_Mutation	G	A	p.R16*
LUSC	TCGA-22-5473-01	SF3B1	ENST00000414963.2,ENST00000487698.1,ENST00000409915.4	chr2	198285752:198285857:198288531:198288698:198299695:198299740,	198288532	198288698	198288681	198288681	Nonsense_Mutation	G	A	p.R16*
LUSC	TCGA-22-5473-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257696	158257696	Nonsense_Mutation	G	A	p.W547*
LUSC	TCGA-22-5473-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71068205:71069475:71071739:71071887:71074945:71075089,	71071740	71071887	71071771	71071771	Nonsense_Mutation	G	A	p.Q365*
LUSC	TCGA-22-5473-01	SGPL1	ENST00000373202.3,ENST00000299297.4	chr10	72610899:72610967:72614464:72614612:72617370:72617447,	72614465	72614612	72614558	72614558	Nonsense_Mutation	C	T	p.Q119*
LUSC	TCGA-22-5473-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21395842:21396017:21396270:21396428:21401205:21401318,	21396271	21396428	21396422	21396422	Nonsense_Mutation	G	A	p.R283*
LUSC	TCGA-22-5473-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
LUSC	TCGA-22-5473-01	ZNF257	ENST00000594947.1,ENST00000600162.1,ENST00000594363.1	chr19	22235337:22235437:22255610:22255737:22256270:22256366,	22255611	22255737	22255656	22255656	Nonsense_Mutation	G	T	p.E17*
LUSC	TCGA-22-5473-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345385	23345385	Nonsense_Mutation	C	G	p.S122*
LUSC	TCGA-22-5474-01	RPL3L	ENST00000268661.7	chr16	1997194:1997381:2000844:2000980:2002874:2003043,	2000845	2000980	2000847	2000847	Nonsense_Mutation	G	A	p.Q167*
LUSC	TCGA-22-5477-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48710797:48710958:48711770:48711951:48713353:48713547,	48711771	48711951	48711773	48711773	Nonsense_Mutation	G	C	p.S3431*
LUSC	TCGA-22-5478-01	SEPSECS	ENST00000302922.3,ENST00000514585.1,ENST00000382103.2,ENST00000358971.3	chr4	25146395:25146487:25146625:25146755:25153581:25153684,	25146626	25146755	25146715	25146715	Nonsense_Mutation	A	T	p.L282*
LUSC	TCGA-22-5480-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128422	202128422	Nonsense_Mutation	G	A	p.R37*
LUSC	TCGA-22-5480-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128422	202128422	Nonsense_Mutation	G	A	p.R37*
LUSC	TCGA-22-5480-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128422	202128422	Nonsense_Mutation	G	A	p.R37*
LUSC	TCGA-22-5480-01	PTPN7	ENST00000476061.1	chr1	202127245:202127429:202128408:202128469:202129672:202129722,	202128409	202128469	202128422	202128422	Nonsense_Mutation	G	A	p.R37*
LUSC	TCGA-22-5482-01	ATF6B	ENST00000375203.3,ENST00000375201.4	chr6	32085363:32085471:32085635:32085815:32086551:32086638,	32085636	32085815	32085724	32085724	Nonsense_Mutation	C	A	p.E446*
LUSC	TCGA-22-5489-01	CAPG	ENST00000449030.1,ENST00000409724.1,ENST00000409670.1,ENST00000263867.4,ENST00000447219.2,ENST00000459793.2,ENST00000409275.1,ENST00000439385.1,ENST00000409921.1	chr2	85628294:85628452:85628651:85628806:85628907:85629063,	85628652	85628806	85628714	85628714	Nonsense_Mutation	C	A	p.E97*
LUSC	TCGA-22-5489-01	GLB1L3	ENST00000431683.2,ENST00000455971.2	chr11	134180464:134180545:134180957:134181064:134182242:134182383,	134180958	134181064	134181039	134181039	Nonsense_Mutation	G	A	p.W421*
LUSC	TCGA-22-5489-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
LUSC	TCGA-22-5491-01	JAK1	ENST00000342505.4	chr1	65334993:65335157:65339052:65339206:65344707:65344746,	65339053	65339206	65339169	65339169	Nonsense_Mutation	C	A	p.E123*
LUSC	TCGA-22-5491-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155727681:155727825:155730234:155730432:155731980:155732165,	155730235	155730432	155730294	155730294	Nonsense_Mutation	G	A	p.Q1684*
LUSC	TCGA-22-5491-01	SOX5	ENST00000546136.1,ENST00000537393.1,ENST00000309359.1,ENST00000545921.1,ENST00000451604.2,ENST00000396007.2	chr12	23696144:23696318:23699249:23699358:23716191:23716337,	23699250	23699358	23699316	23699316	Nonsense_Mutation	T	A	p.K511*
LUSC	TCGA-22-5491-01	CGRRF1	ENST00000216420.7,ENST00000556216.1	chr14	54976629:54976781:54989171:54989311:54996766:54996944,	54989172	54989311	54989297	54989297	Nonsense_Mutation	C	G	p.S77*
LUSC	TCGA-22-5491-01	EPG5	ENST00000587884.1,ENST00000282041.5,ENST00000585906.1	chr18	43450531:43450707:43456200:43456307:43458340:43458413,	43456201	43456307	43456279	43456279	Nonsense_Mutation	C	A	p.E1991*
LUSC	TCGA-22-5492-01	GIPC2	ENST00000370759.3	chr1	78546358:78546544:78560635:78560816:78585076:78585183,	78560636	78560816	78560771	78560771	Nonsense_Mutation	G	T	p.E188*
LUSC	TCGA-22-5492-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112154688	112154688	Nonsense_Mutation	C	G	p.S320*
LUSC	TCGA-22-5492-01	MLXIPL	ENST00000456640.1	chr7	73020239:73020441:73021303:73021348:73021660:73021750,73020239:73020441:73021303:73021348:73021465:73021750,	73021304	73021348	73021342	73021342	Nonsense_Mutation	T	A	p.K194*
LUSC	TCGA-22-5492-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578188	7578188	Nonsense_Mutation	C	A	p.E221*
LUSC	TCGA-22-5492-01	HDAC8	ENST00000439122.2	chrX	71684517:71684581:71708782:71708891:71710778:71710856,71694498:71694579:71708782:71708891:71715005:71715118,71684517:71684581:71708782:71708891:71715005:71715118,71694498:71694579:71708782:71708891:71710778:71710856,	71708783	71708891	71708787	71708787	Nonsense_Mutation	C	A	p.E245*
LUSC	TCGA-33-4532-01	WDR78	ENST00000531980.1	chr1	67327955:67327985:67337052:67337192:67356836:67356949,	67337053	67337192	67337155	67337155	Nonsense_Mutation	T	A	p.R280*
LUSC	TCGA-33-4532-01	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000450950.2,ENST00000392443.3	chr3	193129966:193130160:193132367:193132539:193151633:193151706,	193132368	193132539	193132516	193132516	Nonsense_Mutation	T	A	p.K956*
LUSC	TCGA-33-4532-01	DENND1A	ENST00000473039.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000373618.1,ENST00000394215.2,ENST00000474676.1	chr9	126392674:126392755:126414291:126414402:126429304:126429358,	126414292	126414402	126414402	126414402	Nonsense_Mutation	T	A	p.R138_splice
LUSC	TCGA-33-4532-01	TM2D3	ENST00000559107.1,ENST00000559024.1,ENST00000333202.3	chr15	102190272:102190364:102191898:102191976:102192473:102192570,	102191899	102191976	102191952	102191952	Nonsense_Mutation	G	C	p.S39*
LUSC	TCGA-33-4532-01	RABEP2	ENST00000358201.4,ENST00000562590.1,ENST00000544477.1	chr16	28922208:28922307:28922404:28922500:28925556:28925905,	28922405	28922500	28922461	28922461	Nonsense_Mutation	C	A	p.E312*
LUSC	TCGA-33-4532-01	IRX6	ENST00000290552.7	chr16	55361207:55361317:55361497:55361805:55362611:55363223,	55361498	55361805	55361550	55361550	Nonsense_Mutation	G	T	p.E156*
LUSC	TCGA-33-4532-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2,ENST00000471746.1	chrX	138850418:138850593:138856848:138857112:138864705:138864792,	138856849	138857112	138857060	138857060	Nonsense_Mutation	T	A	p.K672*
LUSC	TCGA-33-4533-01	GRIK3	ENST00000373091.3,ENST00000373093.4	chr1	37337788:37337970:37346234:37346492:37356520:37356697,	37346235	37346492	37346264	37346264	Nonsense_Mutation	G	T	p.S174*
LUSC	TCGA-33-4533-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
LUSC	TCGA-33-4538-01	EPS15	ENST00000371733.3,ENST00000465467.1,ENST00000471391.1,ENST00000371727.1	chr1	51938530:51938620:51946944:51946986:51984870:51984899,	51946945	51946986	51946954	51946954	Nonsense_Mutation	G	C	p.Y22*
LUSC	TCGA-33-4547-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152319636	152319636	Nonsense_Mutation	C	G	p.S1201*
LUSC	TCGA-33-4547-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77662003	77662003	Nonsense_Mutation	C	T	p.Q893*
LUSC	TCGA-33-4547-01	C19orf54	ENST00000469741.2	chr19	41247726:41247769:41248419:41248675:41249819:41249880,	41248420	41248675	41248484	41248484	Nonsense_Mutation	G	A	p.Q304*
LUSC	TCGA-33-4547-01	VAPB	ENST00000475243.1	chr20	56993301:56993419:57009657:57009761:57014000:57014081,	57009658	57009761	57009745	57009745	Nonsense_Mutation	C	G	p.S100*
LUSC	TCGA-33-4547-01	DUSP9	ENST00000370167.4,ENST00000342782.3	chrX	152913372:152913780:152914686:152915142:152915434:152916773,	152914687	152915142	152915069	152915069	Nonsense_Mutation	C	A	p.Y252*
LUSC	TCGA-33-4566-01	AK5	ENST00000344720.5,ENST00000478407.1,ENST00000354567.2	chr1	77752627:77752812:77759477:77759645:77763243:77763375,	77759478	77759645	77759493	77759493	Nonsense_Mutation	C	A	p.S88*
LUSC	TCGA-33-4566-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511512	169511512	Nonsense_Mutation	G	T	p.S939*
LUSC	TCGA-33-4566-01	EDARADD	ENST00000334232.4,ENST00000439430.1,ENST00000359362.5	chr1	236577559:236577599:236590691:236590750:236631530:236631576,	236590692	236590750	236590723	236590723	Nonsense_Mutation	C	A	p.C64*
LUSC	TCGA-33-4566-01	BAZ2B	ENST00000355831.2,ENST00000392783.2	chr2	160303346:160303486:160304752:160304920:160335085:160335232,160303346:160303486:160304752:160304920:160310123:160310312,	160304753	160304920	160304783	160304783	Nonsense_Mutation	C	A	p.G158*
LUSC	TCGA-33-4566-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000482503.1	chr2	160303346:160303486:160304752:160304914:160310123:160310312,	160304753	160304914	160304783	160304783	Nonsense_Mutation	C	A	p.G158*
LUSC	TCGA-33-4566-01	CPB1	ENST00000468341.1,ENST00000282957.4,ENST00000491148.1,ENST00000462345.1,ENST00000465718.1	chr3	148545788:148545864:148552284:148552409:148558472:148558498,	148552285	148552409	148552407	148552407	Nonsense_Mutation	C	G	p.Y90*
LUSC	TCGA-33-4566-01	IGF2R	ENST00000356956.1	chr6	160493796:160493916:160494244:160494501:160494788:160495007,	160494245	160494501	160494403	160494403	Nonsense_Mutation	G	T	p.E1617*
LUSC	TCGA-33-4566-01	PTPN12	ENST00000435495.2	chr7	77200469:77200503:77210743:77210820:77212871:77212967,77200469:77200503:77210743:77210820:77214859:77214888,	77210744	77210820	77210755	77210755	Nonsense_Mutation	C	T	p.R74*
LUSC	TCGA-33-4566-01	GSDMD	ENST00000533063.1,ENST00000524846.1,ENST00000262580.4,ENST00000526406.1,ENST00000531173.1,ENST00000531184.1,ENST00000526469.1	chr8	144644378:144644520:144644617:144644691:144644831:144645197,	144644618	144644691	144644650	144644650	Nonsense_Mutation	G	T	p.E439*
LUSC	TCGA-33-4566-01	ZNF483	ENST00000309235.5,ENST00000355824.3	chr9	114287512:114287542:114289547:114290087:114293154:114293243,	114289548	114290087	114289897	114289897	Nonsense_Mutation	G	A	p.W74*
LUSC	TCGA-33-4566-01	APBB1IP	ENST00000376236.4	chr10	26825002:26825146:26830510:26830621:26849033:26849132,	26830511	26830621	26830589	26830589	Nonsense_Mutation	A	T	p.K375*
LUSC	TCGA-33-4566-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100922154:100922299:100933177:100933483:100962490:100962607,	100933178	100933483	100933286	100933286	Nonsense_Mutation	C	A	p.G702*
LUSC	TCGA-33-4566-01	ARHGEF12	ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120350668:120351139:120351968:120352285:120355146:120355216,	120351969	120352285	120352171	120352171	Nonsense_Mutation	G	A	p.W1480*
LUSC	TCGA-33-4566-01	ITPR2	ENST00000381340.3	chr12	26784798:26784992:26806908:26807059:26808640:26808785,	26806909	26807059	26807026	26807026	Nonsense_Mutation	C	A	p.G875*
LUSC	TCGA-33-4566-01	ANKRD13A	ENST00000550404.1,ENST00000553025.1,ENST00000261739.4	chr12	110449809:110449942:110450929:110451054:110454192:110454238,	110450930	110451054	110450962	110450962	Nonsense_Mutation	G	T	p.E88*
LUSC	TCGA-33-4566-01	SPG11	ENST00000558093.1,ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44890551:44890571:44890828:44891034:44892664:44892830,	44890829	44891034	44890865	44890865	Nonsense_Mutation	C	A	p.E1286*
LUSC	TCGA-33-4566-01	ZMYND15	ENST00000592813.1	chr17	4643336:4643345:4643813:4644435:4644876:4645111,	4643814	4644435	4644069	4644069	Nonsense_Mutation	G	T	p.E76*
LUSC	TCGA-33-4566-01	CCDC57	ENST00000327026.3	chr17	80130513:80130736:80136349:80136481:80141649:80141808,	80136350	80136481	80136436	80136436	Nonsense_Mutation	C	A	p.E474*
LUSC	TCGA-33-4566-01	B3GNTL1	ENST00000571954.1,ENST00000320865.3	chr17	80923526:80923622:80962990:80963086:80972329:80972395,	80962991	80963086	80963008	80963008	Nonsense_Mutation	C	A	p.E163*
LUSC	TCGA-33-4566-01	COLEC12	ENST00000400256.3	chr18	333006:333143:334741:335230:346294:347341,	334742	335230	334952	334952	Nonsense_Mutation	C	A	p.G536*
LUSC	TCGA-33-4582-01	ADAMTS12	ENST00000504830.1,ENST00000504582.1	chr5	33624335:33624456:33630884:33631018:33637681:33637851,	33630885	33631018	33630995	33630995	Nonsense_Mutation	G	A	p.R638*
LUSC	TCGA-33-4582-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20197949	20197949	Nonsense_Mutation	C	A	p.E679*
LUSC	TCGA-33-4582-01	GK	ENST00000378943.3,ENST00000378946.3,ENST00000378945.3	chrX	30686128:30686235:30695491:30695569:30709239:30709316,	30695492	30695569	30695509	30695509	Nonsense_Mutation	C	T	p.Q93*
LUSC	TCGA-33-4583-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192446	211192446	Nonsense_Mutation	A	T	p.Y237*
LUSC	TCGA-33-4583-01	KCNH1	ENST00000367007.4	chr1	211092981:211093411:211192205:211192598:211256121:211256240,	211192206	211192598	211192446	211192446	Nonsense_Mutation	A	T	p.Y237*
LUSC	TCGA-33-4583-01	CCDC69	ENST00000355417.2,ENST00000521308.1,ENST00000518189.1	chr5	150566946:150567020:150578557:150578645:150581142:150581249,	150578558	150578645	150578600	150578600	Nonsense_Mutation	G	A	p.Q93*
LUSC	TCGA-33-4583-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51524709	51524709	Nonsense_Mutation	G	T	p.C3405*
LUSC	TCGA-33-4583-01	TATDN1	ENST00000519548.1	chr8	125528164:125528271:125531058:125531122:125535177:125535243,125528164:125528271:125531058:125531122:125551265:125551297,	125531059	125531122	125531107	125531107	Nonsense_Mutation	C	A	p.G52*
LUSC	TCGA-33-4583-01	TATDN1	ENST00000522310.1	chr8	125528164:125528271:125530982:125531122:125535177:125535243,	125530983	125531122	125531107	125531107	Nonsense_Mutation	C	A	p.G52*
LUSC	TCGA-33-4583-01	ADCY8	ENST00000286355.5	chr8	131848522:131848695:131859669:131859759:131861847:131862049,	131859670	131859759	131859754	131859754	Nonsense_Mutation	C	T	p.W806*
LUSC	TCGA-33-4583-01	DNAJB13	ENST00000339764.1	chr11	73669361:73669465:73670538:73670700:73675922:73676080,	73670539	73670700	73670544	73670544	Nonsense_Mutation	A	T	p.K60*
LUSC	TCGA-33-4583-01	MARK3	ENST00000303622.9,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000561071.1,ENST00000559268.1,ENST00000416682.2,ENST00000216288.7,ENST00000561225.1,ENST00000558223.1,ENST00000558698.1,ENST00000429436.2	chr14	103871470:103871604:103915255:103915304:103918254:103918320,103894723:103894777:103915255:103915304:103918254:103918320,	103915256	103915304	103915265	103915265	Nonsense_Mutation	G	T	p.E103*
LUSC	TCGA-33-4586-01	CD96	ENST00000438817.2,ENST00000283285.5,ENST00000352690.4,ENST00000494798.1	chr3	111316966:111317057:111319572:111319761:111325546:111325639,	111319573	111319761	111319669	111319669	Nonsense_Mutation	C	G	p.S348*
LUSC	TCGA-33-4586-01	HDAC3	ENST00000491581.1,ENST00000305264.3,ENST00000469550.2	chr5	141005316:141005331:141005579:141005638:141005760:141005850,	141005580	141005638	141005610	141005610	Nonsense_Mutation	C	A	p.E317*
LUSC	TCGA-33-4586-01	CAPRIN2	ENST00000548676.1,ENST00000251071.5	chr12	30866718:30866819:30867892:30868078:30869441:30869610,	30867893	30868078	30868013	30868013	Nonsense_Mutation	G	A	p.Q844*
LUSC	TCGA-33-4586-01	CAPRIN2	ENST00000395805.2	chr12	30866718:30866819:30867892:30868015:30869441:30869610,	30867893	30868015	30868013	30868013	Nonsense_Mutation	G	A	p.Q844*
LUSC	TCGA-33-4586-01	CAPRIN2	ENST00000308433.5,ENST00000454014.2,ENST00000298892.5,ENST00000417045.1,ENST00000433722.2	chr12	30866718:30866819:30867892:30868075:30869441:30869610,	30867893	30868075	30868013	30868013	Nonsense_Mutation	G	A	p.Q844*
LUSC	TCGA-33-4586-01	DAO	ENST00000551281.1,ENST00000547122.1,ENST00000549215.1,ENST00000547768.1,ENST00000228476.3	chr12	109290781:109290864:109292454:109292572:109293152:109293208,	109292455	109292572	109292474	109292474	Nonsense_Mutation	G	T	p.G239*
LUSC	TCGA-33-4586-01	SLC14A1	ENST00000590377.1	chr18	43314238:43314367:43316420:43316613:43319127:43319186,43314238:43314367:43316420:43316613:43328340:43328390,	43316421	43316613	43316432	43316432	Nonsense_Mutation	C	A	p.S217*
LUSC	TCGA-33-4586-01	SHROOM2	ENST00000418909.2,ENST00000380913.3,ENST00000452575.1	chrX	9900214:9900910:9905173:9905725:9907234:9907406,	9905174	9905725	9905279	9905279	Nonsense_Mutation	C	A	p.C1231*
LUSC	TCGA-33-6737-01	UGP2	ENST00000467648.2,ENST00000475550.1,ENST00000337130.5,ENST00000445915.2,ENST00000487469.1,ENST00000394417.2	chr2	64111093:64111227:64112722:64113020:64113474:64113646,	64112723	64113020	64112851	64112851	Nonsense_Mutation	T	A	p.L244*
LUSC	TCGA-33-6737-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000604555.1,ENST00000305126.8,ENST00000515433.1,ENST00000514554.1,ENST00000442011.2	chr5	135385204:135385269:135388595:135388808:135389631:135389724,	135388596	135388808	135388806	135388806	Nonsense_Mutation	C	G	p.S375*
LUSC	TCGA-33-6737-01	TGFBI	ENST00000508767.1	chr5	135385127:135385269:135388706:135388808:135389631:135389724,	135388707	135388808	135388806	135388806	Nonsense_Mutation	C	G	p.S375*
LUSC	TCGA-33-6737-01	MLIP	ENST00000514921.1,ENST00000511744.1,ENST00000274897.5,ENST00000502396.1	chr6	54025164:54025230:54025313:54025397:54025537:54025597,	54025314	54025397	54025350	54025350	Nonsense_Mutation	G	T	p.E798*
LUSC	TCGA-33-6737-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100533126:100533238:100568677:100568881:100587885:100588012,	100568678	100568881	100568799	100568799	Nonsense_Mutation	A	T	p.K1648*
LUSC	TCGA-33-6737-01	MIPOL1	ENST00000554930.1	chr14	37667214:37667309:37717033:37717112:37736142:37736374,	37717034	37717112	37717107	37717107	Nonsense_Mutation	C	G	p.S5*
LUSC	TCGA-33-6737-01	PLAUR	ENST00000339082.3,ENST00000221264.4,ENST00000593939.1,ENST00000340093.3,ENST00000599892.1,ENST00000602141.1,ENST00000601723.1	chr19	44160717:44160792:44169467:44169611:44171732:44171843,	44169468	44169611	44169569	44169569	Nonsense_Mutation	G	C	p.S70*
LUSC	TCGA-34-2596-01	SPDEF	ENST00000544425.1	chr6	34507291:34507339:34508760:34508958:34511796:34511939,34507026:34507173:34508760:34508958:34511796:34512261,	34508761	34508958	34508830	34508830	Nonsense_Mutation	C	A	p.E189*
LUSC	TCGA-34-2596-01	DDX54	ENST00000314045.7,ENST00000306014.5,ENST00000550016.1	chr12	113600936:113601079:113601871:113602090:113603448:113603483,	113601872	113602090	113601994	113601994	Nonsense_Mutation	G	A	p.Q606*
LUSC	TCGA-34-2596-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577025	7577025	Nonsense_Mutation	T	A	p.K305*
LUSC	TCGA-34-2600-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106414	168106414	Nonsense_Mutation	G	T	p.E2838*
LUSC	TCGA-34-2600-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1017189	1017189	Nonsense_Mutation	G	C	p.S1871*
LUSC	TCGA-34-2600-01	CREBBP	ENST00000262367.5	chr16	3831204:3831307:3832684:3832927:3841981:3842095,	3832685	3832927	3832751	3832751	Nonsense_Mutation	G	A	p.Q503*
LUSC	TCGA-34-2600-01	CBFB	ENST00000290858.6,ENST00000561924.2	chr16	67100584:67100701:67116115:67116242:67132612:67132714,	67116116	67116242	67116119	67116119	Nonsense_Mutation	G	T	p.E135*
LUSC	TCGA-34-2600-01	CBFB	ENST00000412916.2	chr16	67100584:67100701:67116115:67116211:67132612:67132714,	67116116	67116211	67116119	67116119	Nonsense_Mutation	G	T	p.E135*
LUSC	TCGA-34-2600-01	MCM8	ENST00000378883.1,ENST00000378886.2,ENST00000265187.4,ENST00000378896.3	chr20	5965426:5965646:5966567:5966777:5967927:5968004,	5966568	5966777	5966673	5966673	Nonsense_Mutation	C	T	p.R727*
LUSC	TCGA-34-2608-01	DPPA4	ENST00000495679.1	chr3	109050793:109050878:109052716:109052767:109056310:109056362,	109052717	109052767	109052761	109052761	Nonsense_Mutation	G	T	p.S45*
LUSC	TCGA-34-2608-01	DPPA4	ENST00000478791.1,ENST00000463966.1	chr3	109050793:109050878:109052716:109052840:109056310:109056362,	109052717	109052840	109052761	109052761	Nonsense_Mutation	G	T	p.S45*
LUSC	TCGA-34-2608-01	WDR1	ENST00000502962.1,ENST00000502702.1,ENST00000515743.1,ENST00000382451.2,ENST00000499869.2,ENST00000382452.2	chr4	10079376:10079550:10080514:10080625:10082980:10083068,	10080515	10080625	10080565	10080565	Nonsense_Mutation	C	A	p.E449*
LUSC	TCGA-34-2608-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56098952	56098952	Nonsense_Mutation	G	A	p.Q104*
LUSC	TCGA-34-5231-01	TRAF5	ENST00000488428.1	chr1	211529708:211529810:211533223:211533418:211534043:211534121,	211533224	211533418	211533358	211533358	Nonsense_Mutation	T	A	p.C172*
LUSC	TCGA-34-5231-01	TRAF5	ENST00000336184.2,ENST00000261464.5,ENST00000367004.3	chr1	211529708:211529810:211533253:211533418:211534043:211534121,	211533254	211533418	211533358	211533358	Nonsense_Mutation	T	A	p.C172*
LUSC	TCGA-34-5231-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638020	176638020	Nonsense_Mutation	G	T	p.E874*
LUSC	TCGA-34-5231-01	CD82	ENST00000227155.4,ENST00000342935.3,ENST00000530931.1,ENST00000525898.1	chr11	44636821:44636923:44639711:44639915:44640189:44640273,	44639712	44639915	44639802	44639802	Nonsense_Mutation	G	T	p.E177*
LUSC	TCGA-34-5231-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000553308.1,ENST00000344113.4,ENST00000555002.1	chr14	64565464:64565539:64568649:64568760:64574208:64574325,	64568650	64568760	64568746	64568746	Nonsense_Mutation	G	T	p.G4160*
LUSC	TCGA-34-5231-01	SERPINA6	ENST00000555056.1,ENST00000341584.3	chr14	94770585:94770940:94772407:94772555:94776072:94776343,	94772408	94772555	94772415	94772415	Nonsense_Mutation	G	T	p.S342*
LUSC	TCGA-34-5231-01	SLC28A2	ENST00000347644.3	chr15	45562392:45562474:45564492:45564591:45564870:45564982,	45564493	45564591	45564584	45564584	Nonsense_Mutation	T	A	p.C580*
LUSC	TCGA-34-5232-01	ASB7	ENST00000332783.7	chr15	101152370:101152632:101169641:101170247:101188527:101189738,	101169642	101170247	101169983	101169983	Nonsense_Mutation	C	T	p.R185*
LUSC	TCGA-34-5234-01	DPPA4	ENST00000495679.1,ENST00000487299.1,ENST00000335658.6	chr3	109047864:109047935:109049370:109049659:109050580:109050631,	109049371	109049659	109049432	109049432	Nonsense_Mutation	C	T	p.W206*
LUSC	TCGA-34-5234-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541112	187541112	Nonsense_Mutation	C	A	p.E2210*
LUSC	TCGA-34-5234-01	IPPK	ENST00000287996.3	chr9	95410340:95410430:95411734:95411856:95414854:95414921,	95411735	95411856	95411767	95411767	Nonsense_Mutation	C	A	p.E128*
LUSC	TCGA-34-5234-01	DIAPH2	ENST00000373054.4	chrX	95939710:95940189:95993584:95993761:96013152:96013257,	95993585	95993761	95993591	95993591	Nonsense_Mutation	C	T	p.R58*
LUSC	TCGA-34-5236-01	WDR26	ENST00000480676.2	chr1	224573367:224574204:224577534:224577562:224581529:224581715,	224577535	224577562	224577560	224577560	Nonsense_Mutation	C	A	p.E655*
LUSC	TCGA-34-5236-01	LTBP1	ENST00000415140.2	chr2	33500975:33500990:33505105:33505225:33518226:33518349,33500975:33500990:33505105:33505225:33525517:33525640,	33505106	33505225	33505114	33505114	Nonsense_Mutation	G	T	p.E1001*
LUSC	TCGA-34-5236-01	BNC2	ENST00000603713.1,ENST00000418777.1,ENST00000484726.1,ENST00000380672.4,ENST00000603313.1,ENST00000486514.1,ENST00000380666.2	chr9	16552597:16552763:16582980:16583083:16727794:16727995,	16582981	16583083	16583008	16583008	Nonsense_Mutation	G	A	p.Q136*
LUSC	TCGA-34-5239-01	TTLL7	ENST00000474957.1	chr1	84394818:84394913:84399290:84399449:84464613:84464708,	84399291	84399449	84399338	84399338	Nonsense_Mutation	C	A	p.G334*
LUSC	TCGA-34-5239-01	PROM1	ENST00000508167.1,ENST00000511153.1,ENST00000543373.1,ENST00000505450.1	chr4	16026898:16026935:16034926:16035132:16040568:16040624,	16034927	16035132	16035000	16035000	Nonsense_Mutation	G	A	p.R146*
LUSC	TCGA-34-5240-01	ETFA	ENST00000560044.1	chr15	76584959:76585041:76587931:76588078:76603690:76603737,76584771:76584854:76587931:76588078:76603690:76603737,76584771:76584854:76587931:76588078:76602272:76602405,76584959:76585041:76587931:76588078:76602272:76602405,	76587932	76588078	76588074	76588074	Nonsense_Mutation	G	T	p.S15*
LUSC	TCGA-34-5927-01	SEPT2	ENST00000360051.3,ENST00000391973.2,ENST00000407017.1,ENST00000411484.1,ENST00000402092.2,ENST00000436795.1,ENST00000437066.1,ENST00000391971.2,ENST00000467971.1,ENST00000407971.1,ENST00000475474.1,ENST00000366210.2,ENST00000443492.1,ENST00000434955.1,ENST00000449239.1,ENST00000428282.1	chr2	242263630:242263656:242274540:242274627:242276796:242276848,242265407:242265528:242274540:242274627:242275389:242275488,	242274541	242274627	242274555	242274555	Nonsense_Mutation	G	T	p.G49*
LUSC	TCGA-34-5927-01	LARP7	ENST00000509622.1	chr4	113558680:113558759:113565823:113565924:113567506:113567607,113558348:113558395:113565823:113565924:113567506:113567607,	113565824	113565924	113565913	113565913	Nonsense_Mutation	C	T	p.R37*
LUSC	TCGA-34-5927-01	LARP7	ENST00000324052.6,ENST00000505034.1	chr4	113558680:113558759:113565823:113566027:113567506:113567607,	113565824	113566027	113565913	113565913	Nonsense_Mutation	C	T	p.R37*
LUSC	TCGA-34-5927-01	NIPAL2	ENST00000430223.2,ENST00000522188.1,ENST00000520735.1,ENST00000341166.3	chr8	99234706:99234828:99248382:99248442:99264690:99264829,	99248383	99248442	99248401	99248401	Nonsense_Mutation	T	A	p.R140*
LUSC	TCGA-34-5927-01	ZNF774	ENST00000379090.5	chr15	90895571:90895643:90897873:90897996:90902082:90902189,	90897874	90897996	90897909	90897909	Nonsense_Mutation	C	A	p.S6*
LUSC	TCGA-34-5928-01	TFAP2B	ENST00000393655.3	chr6	50786438:50786685:50791119:50791578:50796331:50796392,	50791120	50791578	50791151	50791151	Nonsense_Mutation	C	A	p.S38*
LUSC	TCGA-34-5928-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91695740:91695860:91699343:91699520:91700218:91700323,	91699344	91699520	91699518	91699518	Nonsense_Mutation	A	T	p.K2169*
LUSC	TCGA-34-5928-01	RASAL1	ENST00000546530.1,ENST00000548055.1,ENST00000551051.1,ENST00000418411.2	chr12	113543518:113543691:113544901:113545046:113545889:113546027,	113544902	113545046	113544952	113544952	Nonsense_Mutation	G	C	p.S537*
LUSC	TCGA-34-5928-01	RASAL1	ENST00000546727.1	chr12	113543518:113543691:113544901:113545400:113545889:113546027,	113544902	113545400	113544952	113544952	Nonsense_Mutation	G	C	p.S537*
LUSC	TCGA-34-5928-01	PTPRT	ENST00000373198.4,ENST00000373187.1,ENST00000356100.2,ENST00000373193.3,ENST00000373201.1,ENST00000373184.1,ENST00000373190.1	chr20	40710521:40710657:40713321:40713485:40714367:40714493,	40713322	40713485	40713386	40713386	Nonsense_Mutation	G	A	p.R1358*
LUSC	TCGA-34-5928-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34889663:34889915:34892670:34892869:34893212:34893322,	34892671	34892869	34892833	34892833	Nonsense_Mutation	G	A	p.Q514*
LUSC	TCGA-34-5928-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662452	40662452	Nonsense_Mutation	C	T	p.Q740*
LUSC	TCGA-34-5929-01	ZBTB48	ENST00000488936.1	chr1	6640600:6641359:6642117:6642359:6645978:6646090,6640147:6640196:6642117:6642359:6645978:6646090,	6642118	6642359	6642200	6642200	Nonsense_Mutation	C	G	p.S258*
LUSC	TCGA-34-5929-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373699	36373699	Nonsense_Mutation	C	A	p.E358*
LUSC	TCGA-37-3783-01	SH3GLB1	ENST00000482504.1,ENST00000535010.1,ENST00000370558.4	chr1	87200761:87200862:87207890:87208119:87208810:87208951,	87207891	87208119	87207947	87207947	Nonsense_Mutation	C	G	p.S302*
LUSC	TCGA-37-3783-01	PTPDC1	ENST00000375360.3,ENST00000467049.1,ENST00000288976.3	chr9	96863847:96864033:96866556:96866667:96870109:96870194,	96866557	96866667	96866629	96866629	Nonsense_Mutation	G	T	p.E758*
LUSC	TCGA-37-3783-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117808	96117808	Nonsense_Mutation	G	C	p.S35*
LUSC	TCGA-37-3783-01	GRIA4	ENST00000428631.2,ENST00000525187.1,ENST00000393127.2,ENST00000530497.1,ENST00000393125.2,ENST00000525032.1,ENST00000282499.5	chr11	105483002:105483161:105623706:105623946:105732749:105732934,	105623707	105623946	105623869	105623869	Nonsense_Mutation	C	A	p.S137*
LUSC	TCGA-37-3783-01	ZSCAN18	ENST00000600897.1	chr19	58600054:58600204:58601231:58601753:58609540:58609598,58600054:58600204:58601231:58601753:58609481:58609570,58600054:58600204:58601231:58601753:58604594:58604765,	58601232	58601753	58601475	58601475	Nonsense_Mutation	C	A	p.E110*
LUSC	TCGA-37-3783-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784061	54784061	Nonsense_Mutation	G	A	p.Q816*
LUSC	TCGA-37-3783-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67937591	67937591	Nonsense_Mutation	G	T	p.E279*
LUSC	TCGA-37-3789-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717530	73717530	Nonsense_Mutation	C	G	p.S2814*
LUSC	TCGA-37-3789-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50122588:50122637:50123777:50123890:50124145:50124218,	50123778	50123890	50123778	50123778	Nonsense_Mutation	C	T	p.Q660_splice
LUSC	TCGA-37-3789-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671465	151671465	Nonsense_Mutation	G	T	p.E647*
LUSC	TCGA-37-3789-01	EZH2	ENST00000460911.1,ENST00000350995.2,ENST00000492143.1,ENST00000320356.2,ENST00000483967.1	chr7	148511050:148511229:148512005:148512131:148512597:148512638,	148512006	148512131	148512011	148512011	Nonsense_Mutation	G	C	p.S551*
LUSC	TCGA-37-3789-01	HINT2	ENST00000259667.5,ENST00000461169.1,ENST00000474848.2	chr9	35813262:35813335:35813441:35813546:35813640:35813691,	35813442	35813546	35813519	35813519	Nonsense_Mutation	G	A	p.Q84*
LUSC	TCGA-37-3789-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000265371.4	chr10	33545243:33545399:33552573:33552801:33559602:33559784,	33552574	33552801	33552639	33552639	Nonsense_Mutation	G	C	p.S198*
LUSC	TCGA-37-3789-01	PPFIA1	ENST00000389547.3,ENST00000532504.1,ENST00000253925.7	chr11	70170952:70171117:70171605:70171680:70172367:70172469,	70171606	70171680	70171654	70171654	Nonsense_Mutation	G	T	p.E194*
LUSC	TCGA-37-3789-01	TRPC6	ENST00000360497.4	chr11	101353679:101353896:101362286:101362469:101374754:101374821,	101362287	101362469	101362388	101362388	Nonsense_Mutation	C	A	p.E343*
LUSC	TCGA-37-3789-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579494	7579494	Nonsense_Mutation	T	A	p.R65*
LUSC	TCGA-37-3789-01	CIRBP	ENST00000588230.1,ENST00000587169.1,ENST00000589235.1,ENST00000587323.1,ENST00000586472.1,ENST00000585913.1,ENST00000590704.1,ENST00000593048.1,ENST00000589710.1,ENST00000444172.2,ENST00000591376.1,ENST00000588090.1,ENST00000586773.1,ENST00000593093.1,ENST00000591935.1,ENST00000590171.1,ENST00000592412.1,ENST00000585630.1,ENST00000593128.1,ENST00000588030.1,ENST00000589660.1,ENST00000586548.1,ENST00000589686.1,ENST00000320936.5,ENST00000586636.1,ENST00000585914.1,ENST00000587896.1	chr19	1271327:1271364:1271549:1271631:1271979:1272027,1271449:1271466:1271549:1271631:1271979:1272027,	1271550	1271631	1271623	1271623	Nonsense_Mutation	C	A	p.Y141*
LUSC	TCGA-37-4133-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924287	82924287	Nonsense_Mutation	C	A	p.E621*
LUSC	TCGA-37-4133-01	TSEN54	ENST00000580013.1,ENST00000333213.6	chr17	73512641:73512697:73512826:73512991:73513089:73513153,	73512827	73512991	73512834	73512834	Nonsense_Mutation	G	T	p.E22*
LUSC	TCGA-37-4133-01	TSEN54	ENST00000583454.1	chr17	73512641:73512697:73512826:73513153:73513241:73513325,	73512827	73513153	73512834	73512834	Nonsense_Mutation	G	T	p.E22*
LUSC	TCGA-37-4133-01	CTSZ	ENST00000503833.2,ENST00000488395.1,ENST00000217131.5	chr20	57572657:57572808:57576519:57576699:57581376:57581481,	57576520	57576699	57576578	57576578	Nonsense_Mutation	G	T	p.Y143*
LUSC	TCGA-37-4133-01	PLCXD1	ENST00000430923.2,ENST00000447472.1,ENST00000415337.1,ENST00000484611.2,ENST00000381663.3,ENST00000399012.1,ENST00000381657.2,ENST00000448477.1	chrX	200833:200981:205399:205536:207314:207424,	205400	205536	205453	205453	Nonsense_Mutation	G	T	p.E61*
LUSC	TCGA-37-4135-01	DNAJC1	ENST00000376980.3	chr10	22055189:22055238:22094908:22095028:22171210:22171314,	22094909	22095028	22094923	22094923	Nonsense_Mutation	G	A	p.R362*
LUSC	TCGA-37-4135-01	PLEKHA1	ENST00000368990.3,ENST00000433307.1,ENST00000368989.2,ENST00000392799.3,ENST00000368988.1,ENST00000538022.1	chr10	124175374:124175518:124177415:124177484:124183714:124183779,	124177416	124177484	124177426	124177426	Nonsense_Mutation	G	A	p.W208*
LUSC	TCGA-37-4135-01	CDH11	ENST00000268603.4,ENST00000566827.1,ENST00000394156.3	chr16	65015950:65016204:65022059:65022247:65025670:65025838,	65022060	65022247	65022115	65022115	Nonsense_Mutation	G	T	p.S315*
LUSC	TCGA-37-4135-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579485	7579485	Nonsense_Mutation	C	A	p.E68*
LUSC	TCGA-37-4141-01	ANGPTL3	ENST00000371129.3	chr1	63064366:63064477:63066752:63066867:63067439:63067553,	63066753	63066867	63066783	63066783	Nonsense_Mutation	G	T	p.E213*
LUSC	TCGA-37-4141-01	RXRG	ENST00000470566.1,ENST00000359842.5	chr1	165380185:165380346:165386277:165386457:165389106:165389251,	165386278	165386457	165386447	165386447	Nonsense_Mutation	G	T	p.Y151*
LUSC	TCGA-37-4141-01	TMEM173	ENST00000507297.1,ENST00000503287.1,ENST00000330794.4	chr5	138855929:138856039:138856913:138857100:138857854:138858091,	138856914	138857100	138857016	138857016	Nonsense_Mutation	C	A	p.E282*
LUSC	TCGA-37-5819-01	IGSF9	ENST00000361509.3,ENST00000368094.1	chr1	159900481:159900657:159900927:159901051:159901242:159901393,	159900928	159901051	159900956	159900956	Nonsense_Mutation	G	A	p.Q537*
LUSC	TCGA-37-5819-01	SPOPL	ENST00000280098.4	chr2	139308543:139308624:139310123:139310251:139316591:139316769,	139310124	139310251	139310249	139310249	Nonsense_Mutation	G	T	p.E160*
LUSC	TCGA-37-5819-01	DNAH7	ENST00000312428.6	chr2	196723197:196723528:196726440:196726670:196728872:196729745,	196726441	196726670	196726627	196726627	Nonsense_Mutation	A	T	p.L2517*
LUSC	TCGA-37-5819-01	UBE2E2	ENST00000396703.1,ENST00000425792.1	chr3	23258752:23258803:23541098:23541231:23574044:23574106,	23541099	23541231	23541127	23541127	Nonsense_Mutation	G	T	p.E86*
LUSC	TCGA-37-5819-01	ADAMTS16	ENST00000274181.7,ENST00000433402.2	chr5	5235149:5235299:5237081:5237212:5239263:5239300,	5237082	5237212	5237172	5237172	Nonsense_Mutation	C	A	p.S705*
LUSC	TCGA-37-5819-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911978	29911978	Nonsense_Mutation	C	A	p.Y233*
LUSC	TCGA-37-5819-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29912172	29912172	Nonsense_Mutation	G	A	p.W298*
LUSC	TCGA-37-5819-01	ARHGEF7	ENST00000469877.1,ENST00000544132.1	chr13	111929933:111930020:111932884:111933024:111935485:111935573,	111932885	111933024	111932896	111932896	Nonsense_Mutation	G	T	p.E554*
LUSC	TCGA-37-5819-01	MYH11	ENST00000576790.2,ENST00000300036.5	chr16	15872636:15872700:15876241:15876334:15880486:15880589,	15876242	15876334	15876249	15876249	Nonsense_Mutation	G	T	p.S247*
LUSC	TCGA-37-5819-01	NSMCE1	ENST00000563900.1,ENST00000561960.1,ENST00000565070.1,ENST00000564342.1,ENST00000361439.4,ENST00000563273.1	chr16	27245508:27245586:27246498:27246620:27268755:27268902,	27246499	27246620	27246603	27246603	Nonsense_Mutation	T	A	p.K52*
LUSC	TCGA-37-5819-01	APOH	ENST00000205948.6	chr17	64208156:64208306:64210570:64210768:64212905:64213082,	64210571	64210768	64210608	64210608	Nonsense_Mutation	A	T	p.C315*
LUSC	TCGA-37-5819-01	RNF126	ENST00000606702.1,ENST00000589762.2,ENST00000591394.1,ENST00000605891.1,ENST00000606896.1	chr19	652232:652296:652825:652884:663046:663161,	652826	652884	652863	652863	Nonsense_Mutation	C	A	p.E33*
LUSC	TCGA-37-5819-01	PIH1D1	ENST00000600875.1,ENST00000596916.1,ENST00000597577.1,ENST00000601807.1,ENST00000262265.5,ENST00000596049.1,ENST00000601053.1	chr19	49950280:49950356:49950594:49950724:49951083:49951165,	49950595	49950724	49950682	49950682	Nonsense_Mutation	G	T	p.S175*
LUSC	TCGA-39-5016-01	RXRG	ENST00000470566.1,ENST00000359842.5	chr1	165380185:165380346:165386277:165386457:165389106:165389251,	165386278	165386457	165386326	165386326	Nonsense_Mutation	G	A	p.Q192*
LUSC	TCGA-39-5016-01	ABCF2	ENST00000287844.2,ENST00000222388.2,ENST00000473874.1	chr7	150915839:150915959:150916149:150916245:150918663:150918766,	150916150	150916245	150916197	150916197	Nonsense_Mutation	G	A	p.Q324*
LUSC	TCGA-39-5016-01	CLEC4C	ENST00000542353.1,ENST00000360345.3	chr12	7890024:7890170:7894016:7894127:7898926:7899019,	7894017	7894127	7894077	7894077	Nonsense_Mutation	G	A	p.R59*
LUSC	TCGA-39-5016-01	NCOR1	ENST00000579606.1	chr17	15950303:15950407:15952158:15952299:15960827:15961037,	15952159	15952299	15952254	15952254	Nonsense_Mutation	G	T	p.Y2147*
LUSC	TCGA-39-5016-01	NCOR1	ENST00000395857.3,ENST00000395851.1,ENST00000470782.1,ENST00000395849.2,ENST00000464381.1,ENST00000458113.2,ENST00000580554.1,ENST00000268712.3	chr17	15950303:15950407:15952158:15952302:15960827:15961037,	15952159	15952302	15952254	15952254	Nonsense_Mutation	G	T	p.Y2147*
LUSC	TCGA-39-5019-01	PARD3B	ENST00000358768.2,ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205912303:205912413:205969149:205969238:205978214:205978301,	205969150	205969238	205969168	205969168	Nonsense_Mutation	G	T	p.E175*
LUSC	TCGA-39-5019-01	UBE3C	ENST00000348165.5,ENST00000389103.4	chr7	156962997:156963144:156967612:156967728:156971383:156971541,	156967613	156967728	156967697	156967697	Nonsense_Mutation	C	T	p.Q143*
LUSC	TCGA-39-5019-01	EEF2K	ENST00000568269.1,ENST00000263026.5	chr16	22260075:22260136:22261974:22262012:22262471:22262643,	22261975	22262012	22261999	22261999	Nonsense_Mutation	G	T	p.E145*
LUSC	TCGA-39-5019-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577127	7577127	Nonsense_Mutation	C	A	p.E271*
LUSC	TCGA-39-5021-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450740	55450740	Nonsense_Mutation	C	A	p.E483*
LUSC	TCGA-39-5022-01	AMOTL2	ENST00000506326.1,ENST00000422605.2,ENST00000514516.1,ENST00000249883.5,ENST00000513145.1	chr3	134080353:134080649:134084658:134084751:134085124:134085269,	134084659	134084751	134084662	134084662	Nonsense_Mutation	G	A	p.Q484*
LUSC	TCGA-39-5022-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540391	187540391	Nonsense_Mutation	G	C	p.S2450*
LUSC	TCGA-39-5022-01	MATR3	ENST00000394800.2,ENST00000502422.1,ENST00000509990.1,ENST00000505625.1,ENST00000511249.1,ENST00000502929.1,ENST00000515833.1,ENST00000503811.1,ENST00000504643.1,ENST00000510056.1,ENST00000502499.1,ENST00000361059.2,ENST00000394805.3,ENST00000504203.1	chr5	138653295:138653410:138654596:138654722:138655022:138655159,	138654597	138654722	138654711	138654711	Nonsense_Mutation	A	T	p.K475*
LUSC	TCGA-39-5022-01	ANKLE2	ENST00000538766.1,ENST00000539605.1,ENST00000357997.5	chr12	133304617:133304749:133306264:133306856:133310970:133311046,	133306265	133306856	133306454	133306454	Nonsense_Mutation	G	C	p.S765*
LUSC	TCGA-39-5022-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514843	75514843	Nonsense_Mutation	C	A	p.E506*
LUSC	TCGA-39-5022-01	SPOP	ENST00000393328.2,ENST00000393331.3,ENST00000503676.1,ENST00000347630.2,ENST00000504102.1,ENST00000505581.1,ENST00000509079.1	chr17	47685235:47685291:47688641:47688819:47696342:47696470,	47688642	47688819	47688717	47688717	Nonsense_Mutation	C	A	p.E195*
LUSC	TCGA-39-5024-01	PACRGL	ENST00000506951.1	chr4	20709425:20709493:20711305:20711396:20714410:20714454,20706282:20706437:20711305:20711396:20714410:20714454,	20711306	20711396	20711365	20711365	Nonsense_Mutation	C	G	p.S160*
LUSC	TCGA-39-5024-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167849012:167849102:167850537:167851073:167855037:167855146,	167850538	167851073	167850747	167850747	Nonsense_Mutation	C	G	p.S495*
LUSC	TCGA-39-5024-01	RACGAP1	ENST00000547905.1,ENST00000454520.2,ENST00000549342.1,ENST00000551016.1,ENST00000434422.1,ENST00000312377.5,ENST00000427314.2	chr12	50386332:50386438:50387913:50388112:50388196:50388292,	50387914	50388112	50387974	50387974	Nonsense_Mutation	G	A	p.R427*
LUSC	TCGA-39-5027-01	TMEM131	ENST00000186436.5	chr2	98421550:98421668:98421838:98421914:98422013:98422166,	98421839	98421914	98421890	98421890	Nonsense_Mutation	C	A	p.G745*
LUSC	TCGA-39-5027-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
LUSC	TCGA-39-5027-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
LUSC	TCGA-39-5027-01	PCDH15	ENST00000373955.1,ENST00000320301.6,ENST00000395446.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000373957.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55839090:55839184:55849743:55849823:55892634:55892767,	55849744	55849823	55849791	55849791	Nonsense_Mutation	A	T	p.Y655*
LUSC	TCGA-39-5027-01	KRT73	ENST00000305748.3,ENST00000546934.1	chr12	53007471:53007636:53008362:53008458:53009062:53009116,	53008363	53008458	53008428	53008428	Nonsense_Mutation	C	A	p.E252*
LUSC	TCGA-39-5027-01	SLC25A30	ENST00000310862.7,ENST00000463262.1	chr13	45978461:45978547:45980017:45980112:45985496:45985615,	45980018	45980112	45980021	45980021	Nonsense_Mutation	C	A	p.E102*
LUSC	TCGA-39-5027-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616072	25616072	Nonsense_Mutation	T	A	p.K420*
LUSC	TCGA-39-5028-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6026709	6026709	Nonsense_Mutation	G	A	p.R563*
LUSC	TCGA-39-5028-01	CEP164	ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117241795:117242182:117244466:117244547:117246423:117246507,	117244467	117244547	117244507	117244507	Nonsense_Mutation	C	G	p.S398*
LUSC	TCGA-39-5028-01	ARL2BP	ENST00000563234.1,ENST00000219204.3	chr16	57279991:57280053:57282448:57282555:57283678:57283764,	57282449	57282555	57282555	57282555	Nonsense_Mutation	C	A	p.Y69_splice
LUSC	TCGA-39-5028-01	TJP3	ENST00000589378.1,ENST00000539908.2,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9	chr19	3738894:3739132:3740549:3740761:3743936:3744032,	3740550	3740761	3740705	3740705	Nonsense_Mutation	C	G	p.S629*
LUSC	TCGA-39-5029-01	ABL2	ENST00000392043.3,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3	chr1	179081443:179081533:179084012:179084165:179086466:179086651,	179084013	179084165	179084073	179084073	Nonsense_Mutation	C	A	p.G501*
LUSC	TCGA-39-5029-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LUSC	TCGA-39-5030-01	MLH1	ENST00000447829.1	chr3	37058996:37059090:37061800:37061954:37067127:37067498,37055922:37056035:37061800:37061954:37067127:37067410,	37061801	37061954	37061853	37061853	Nonsense_Mutation	G	T	p.E313*
LUSC	TCGA-39-5030-01	EIF2B5	ENST00000491144.1	chr3	183857867:183857945:183858205:183858518:183859712:183859831,183857936:183858009:183858205:183858518:183859712:183859831,	183858206	183858518	183858308	183858308	Nonsense_Mutation	C	T	p.R316*
LUSC	TCGA-39-5030-01	EIF2B5	ENST00000479833.1	chr3	183857867:183857945:183858205:183858403:183859712:183859831,	183858206	183858403	183858308	183858308	Nonsense_Mutation	C	T	p.R316*
LUSC	TCGA-39-5030-01	MFSD8	ENST00000513559.1,ENST00000296468.3,ENST00000509826.1	chr4	128842885:128842926:128851837:128851972:128854139:128854248,128843016:128843118:128851837:128851972:128854139:128854248,	128851838	128851972	128851936	128851936	Nonsense_Mutation	C	T	p.W300*
LUSC	TCGA-39-5030-01	DNAH5	ENST00000265104.4	chr5	13841800:13842013:13844945:13845102:13850760:13850924,	13844946	13845102	13845026	13845026	Nonsense_Mutation	G	A	p.Q1731*
LUSC	TCGA-39-5030-01	RNF8	ENST00000498460.1	chr6	37342395:37342485:37344701:37344809:37358517:37358838,37342395:37342485:37344701:37344809:37348925:37349130,37339287:37339350:37344701:37344809:37358517:37358838,	37344702	37344809	37344705	37344705	Nonsense_Mutation	G	T	p.E378*
LUSC	TCGA-39-5030-01	SUV39H2	ENST00000354919.6	chr10	14923498:14923644:14938844:14939516:14941537:14941684,	14938845	14939516	14939354	14939354	Nonsense_Mutation	C	A	p.C229*
LUSC	TCGA-39-5030-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17744705	17744705	Nonsense_Mutation	C	T	p.Q827*
LUSC	TCGA-39-5030-01	XIAP	ENST00000371199.3	chrX	122994303:122994395:123019480:123020389:123022468:123022533,122993727:122993755:123019480:123020389:123022468:123022533,122994044:122994143:123019480:123020389:123022468:123022533,	123019481	123020389	123019782	123019782	Nonsense_Mutation	C	A	p.C90*
LUSC	TCGA-39-5031-01	MRPL55	ENST00000366732.1	chr1	228294388:228294619:228295368:228295561:228295935:228296019,	228295369	228295561	228295503	228295503	Nonsense_Mutation	G	A	p.R68*
LUSC	TCGA-39-5031-01	MRPL55	ENST00000336300.5,ENST00000366746.3,ENST00000295008.4,ENST00000366734.1,ENST00000366735.1,ENST00000411464.2,ENST00000366736.1,ENST00000366739.1,ENST00000336520.3,ENST00000366741.1,ENST00000366740.1,ENST00000366744.1,ENST00000366742.1,ENST00000366733.1,ENST00000366747.3,ENST00000391867.3,ENST00000348259.5	chr1	228294388:228294619:228295368:228295570:228295935:228296019,	228295369	228295570	228295503	228295503	Nonsense_Mutation	G	A	p.R68*
LUSC	TCGA-39-5031-01	EML4	ENST00000409040.1,ENST00000401738.3,ENST00000318522.5	chr2	42472644:42472827:42483640:42483770:42488260:42488434,	42483641	42483770	42483655	42483655	Nonsense_Mutation	C	T	p.R75*
LUSC	TCGA-39-5031-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8	chr2	48687233:48687292:48688276:48688371:48692075:48692128,	48688277	48688371	48688336	48688336	Nonsense_Mutation	C	G	p.S220*
LUSC	TCGA-39-5031-01	GK5	ENST00000460515.1,ENST00000392993.2,ENST00000480757.1	chr3	141896323:141896418:141900302:141900407:141901764:141901891,	141900303	141900407	141900354	141900354	Nonsense_Mutation	C	A	p.E333*
LUSC	TCGA-39-5031-01	PCOLCE2	ENST00000480473.1,ENST00000470795.1,ENST00000295992.3	chr3	142539808:142539887:142542373:142542457:142548533:142548573,	142542374	142542457	142542385	142542385	Nonsense_Mutation	G	C	p.S313*
LUSC	TCGA-39-5031-01	RFC4	ENST00000296273.2,ENST00000447345.1,ENST00000494047.1,ENST00000433496.1,ENST00000392481.2,ENST00000418288.1	chr3	186510643:186510736:186512446:186512566:186515323:186515403,	186512447	186512566	186512450	186512450	Nonsense_Mutation	G	C	p.S136*
LUSC	TCGA-39-5031-01	RFC4	ENST00000449502.1	chr3	186510643:186510736:186512446:186512570:186515323:186515403,	186512447	186512570	186512450	186512450	Nonsense_Mutation	G	C	p.S136*
LUSC	TCGA-39-5031-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229027	8229027	Nonsense_Mutation	G	T	p.E536*
LUSC	TCGA-39-5031-01	POT1	ENST00000608057.1,ENST00000357628.3,ENST00000609106.1,ENST00000607932.1,ENST00000393329.1	chr7	124493025:124493192:124499010:124499166:124503403:124503439,	124499011	124499166	124499073	124499073	Nonsense_Mutation	G	A	p.Q214*
LUSC	TCGA-39-5031-01	PPP3CC	ENST00000289963.8,ENST00000240139.5	chr8	22384904:22385030:22386018:22386090:22389737:22389819,	22386019	22386090	22386063	22386063	Nonsense_Mutation	G	T	p.E372*
LUSC	TCGA-39-5031-01	RBM17	ENST00000446108.1,ENST00000379888.4	chr10	6154172:6154324:6155470:6155544:6156011:6156110,	6155471	6155544	6155486	6155486	Nonsense_Mutation	C	G	p.S291*
LUSC	TCGA-39-5031-01	NAALAD2	ENST00000534061.1	chr11	89891312:89891406:89892406:89892505:89896116:89896202,	89892407	89892505	89892410	89892410	Nonsense_Mutation	C	A	p.Y298*
LUSC	TCGA-39-5031-01	GOLGA3	ENST00000204726.3,ENST00000456883.2,ENST00000450791.2	chr12	133354251:133354391:133357383:133357500:133358881:133359079,	133357384	133357500	133357410	133357410	Nonsense_Mutation	C	A	p.E1186*
LUSC	TCGA-39-5031-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579378	7579378	Nonsense_Mutation	G	T	p.Y103*
LUSC	TCGA-39-5031-01	CACNA1G	ENST00000511768.1,ENST00000505165.1,ENST00000502264.1,ENST00000503485.1,ENST00000503436.1,ENST00000515165.1,ENST00000506406.1,ENST00000507609.1,ENST00000359106.5,ENST00000360761.4,ENST00000507510.2,ENST00000514717.1	chr17	48685289:48685401:48687242:48687296:48692721:48692873,48685289:48685380:48687242:48687296:48692721:48692873,	48687243	48687296	48687294	48687294	Nonsense_Mutation	C	G	p.S1586*
LUSC	TCGA-39-5036-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366072	37366072	Nonsense_Mutation	C	T	p.Q899*
LUSC	TCGA-39-5036-01	PPP4R2	ENST00000295862.9,ENST00000488810.1,ENST00000470976.1,ENST00000356692.5	chr3	73096336:73096507:73108187:73108281:73110173:73110211,	73108188	73108281	73108204	73108204	Nonsense_Mutation	C	T	p.Q102*
LUSC	TCGA-39-5036-01	SERAC1	ENST00000435180.1,ENST00000367104.3,ENST00000607071.1	chr6	158537216:158537314:158538758:158538853:158540060:158540093,	158538759	158538853	158538849	158538849	Nonsense_Mutation	C	T	p.W438*
LUSC	TCGA-39-5039-01	HAT1	ENST00000412731.1,ENST00000392584.1,ENST00000494601.1,ENST00000264108.4	chr2	172841095:172841247:172844159:172844276:172848098:172848537,	172844160	172844276	172844237	172844237	Nonsense_Mutation	C	G	p.Y351*
LUSC	TCGA-39-5039-01	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000509868.1	chr5	11565055:11565168:11732247:11732384:11903928:11904091,	11732248	11732384	11732318	11732318	Nonsense_Mutation	A	T	p.L35*
LUSC	TCGA-43-2578-01	CCDC28B	ENST00000373602.5,ENST00000421922.2	chr1	32669484:32669646:32669786:32669980:32670198:32670221,	32669787	32669980	32669966	32669966	Nonsense_Mutation	C	T	p.Q171*
LUSC	TCGA-43-2578-01	CCDC28B	ENST00000461819.1	chr1	32669484:32669646:32669833:32669980:32670198:32670221,	32669834	32669980	32669966	32669966	Nonsense_Mutation	C	T	p.Q171*
LUSC	TCGA-43-2578-01	ANO10	ENST00000396091.3	chr3	43621844:43621964:43640023:43640158:43647205:43647355,	43640024	43640158	43640090	43640090	Nonsense_Mutation	T	A	p.R136*
LUSC	TCGA-43-2578-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116617106	116617106	Nonsense_Mutation	C	A	p.E364*
LUSC	TCGA-43-2578-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124348612:124348772:124349864:124350061:124351550:124351686,	124349865	124350061	124349885	124349885	Nonsense_Mutation	T	A	p.K1011*
LUSC	TCGA-43-3394-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541799	187541799	Nonsense_Mutation	G	A	p.Q1981*
LUSC	TCGA-43-3394-01	C5orf38	ENST00000397835.4	chr5	2752378:2752578:2752735:2752868:2753398:2753469,2752378:2752578:2752735:2752868:2755142:2755195,	2752736	2752868	2752747	2752747	Nonsense_Mutation	C	G	p.S71*
LUSC	TCGA-43-3394-01	MSH3	ENST00000265081.6	chr5	79965915:79966128:79968062:79968179:79968559:79968677,	79968063	79968179	79968171	79968171	Nonsense_Mutation	G	T	p.G301*
LUSC	TCGA-43-3394-01	CSAD	ENST00000424845.1	chr12	53564206:53564286:53565109:53565225:53565665:53565772,53564206:53564286:53565109:53565225:53565661:53565772,	53565110	53565225	53565181	53565181	Nonsense_Mutation	G	A	p.Q166*
LUSC	TCGA-43-3394-01	CSAD	ENST00000475890.1	chr12	53564206:53564286:53565056:53565225:53565665:53565772,	53565057	53565225	53565181	53565181	Nonsense_Mutation	G	A	p.Q166*
LUSC	TCGA-43-3394-01	CSAD	ENST00000454442.1	chr12	53564206:53564286:53564960:53565225:53565665:53565772,	53564961	53565225	53565181	53565181	Nonsense_Mutation	G	A	p.Q166*
LUSC	TCGA-43-3920-01	KNG1	ENST00000265023.4,ENST00000287611.2	chr3	186442876:186443049:186445025:186445133:186449333:186449418,	186445026	186445133	186445035	186445035	Nonsense_Mutation	G	T	p.G192*
LUSC	TCGA-43-3920-01	NPNT	ENST00000379987.2,ENST00000514632.1,ENST00000427316.2,ENST00000506666.1,ENST00000514622.1,ENST00000453617.2,ENST00000503451.1	chr4	106880244:106880283:106888344:106888601:106891541:106892827,106880244:106880283:106888344:106888601:106890051:106890064,	106888345	106888601	106888366	106888366	Nonsense_Mutation	C	A	p.S486*
LUSC	TCGA-43-3920-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717708	89717708	Nonsense_Mutation	C	T	p.Q245*
LUSC	TCGA-43-5668-01	C1orf198	ENST00000366663.5,ENST00000523410.1,ENST00000470540.1	chr1	230975366:230975654:230979099:230979642:230991413:230991464,	230979100	230979642	230979363	230979363	Nonsense_Mutation	C	A	p.E222*
LUSC	TCGA-43-5668-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73786098:73786269:73799388:73800551:73826527:73826648,	73799389	73800551	73800228	73800228	Nonsense_Mutation	G	T	p.E3741*
LUSC	TCGA-43-5668-01	CASP8	ENST00000392258.3,ENST00000392266.3,ENST00000413726.1,ENST00000392259.2,ENST00000432109.2,ENST00000323492.7,ENST00000447616.1,ENST00000264274.9,ENST00000358485.4,ENST00000392263.2,ENST00000339403.6,ENST00000471383.1,ENST00000437283.1	chr2	202131209:202131514:202136238:202136344:202137360:202137448,	202136239	202136344	202136259	202136259	Nonsense_Mutation	C	G	p.S109*
LUSC	TCGA-43-5668-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30653372	30653372	Nonsense_Mutation	C	A	p.E142*
LUSC	TCGA-43-5668-01	NPAT	ENST00000610253.1,ENST00000278612.8	chr11	108056129:108056221:108057208:108057296:108058824:108058906,	108057209	108057296	108057295	108057295	Nonsense_Mutation	C	A	p.S213_splice
LUSC	TCGA-43-5668-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7640368:7640683:7647676:7647997:7649408:7649729,	7647677	7647997	7647932	7647932	Nonsense_Mutation	C	A	p.E389*
LUSC	TCGA-43-5668-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93263752:93264326:93273080:93273308:93275644:93275864,	93273081	93273308	93273305	93273305	Nonsense_Mutation	G	T	p.E257*
LUSC	TCGA-43-5668-01	ATP6V0A1	ENST00000264649.6,ENST00000393829.2,ENST00000343619.4,ENST00000544137.1,ENST00000537728.1,ENST00000546249.1,ENST00000585525.1	chr17	40639364:40639385:40642504:40642655:40646351:40646491,	40642505	40642655	40642586	40642586	Nonsense_Mutation	A	T	p.K376*
LUSC	TCGA-43-5668-01	PSG8	ENST00000600709.1	chr19	43256878:43257528:43258484:43258739:43262153:43262432,	43258485	43258739	43258691	43258691	Nonsense_Mutation	G	T	p.S346*
LUSC	TCGA-43-6143-01	REG3G	ENST00000393897.2,ENST00000272324.5	chr2	79253838:79253957:79254159:79254297:79254932:79255059,	79254160	79254297	79254169	79254169	Nonsense_Mutation	C	T	p.Q69*
LUSC	TCGA-43-6143-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216295437:216295575:216296555:216296687:216298046:216298184,	216296556	216296687	216296609	216296609	Nonsense_Mutation	A	C	p.L165*
LUSC	TCGA-43-6143-01	DPPA4	ENST00000495679.1,ENST00000487299.1,ENST00000335658.6	chr3	109047864:109047935:109049370:109049659:109050580:109050631,	109049371	109049659	109049619	109049619	Nonsense_Mutation	G	C	p.S144*
LUSC	TCGA-43-6143-01	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016199	167016199	Nonsense_Mutation	A	T	p.Y591*
LUSC	TCGA-43-6143-01	APBB1IP	ENST00000376236.4	chr10	26830510:26830621:26849033:26849132:26849658:26849773,	26849034	26849132	26849103	26849103	Nonsense_Mutation	C	T	p.Q409*
LUSC	TCGA-43-6143-01	HERC1	ENST00000443617.2,ENST00000559886.1	chr15	64047427:64047524:64048635:64048947:64050373:64050568,	64048636	64048947	64048842	64048842	Nonsense_Mutation	G	A	p.Q443*
LUSC	TCGA-43-6647-01	CRABP2	ENST00000368221.1,ENST00000368222.3	chr1	156669547:156669868:156670333:156670450:156670665:156670844,	156670334	156670450	156670390	156670390	Nonsense_Mutation	C	A	p.E104*
LUSC	TCGA-43-6647-01	SLAMF1	ENST00000355199.3,ENST00000538290.1,ENST00000235739.5	chr1	160604402:160604687:160606980:160607319:160616659:160616811,	160606981	160607319	160607107	160607107	Nonsense_Mutation	T	A	p.K97*
LUSC	TCGA-43-6647-01	FLNA	ENST00000369856.3,ENST00000438732.1	chrX	153581921:153582095:153582282:153582411:153582518:153582659,153581663:153581825:153582282:153582411:153582518:153582659,	153582283	153582411	153582286	153582286	Nonsense_Mutation	C	A	p.E1895*
LUSC	TCGA-43-6770-01	C3orf33	ENST00000482061.2,ENST00000534941.1,ENST00000486435.1,ENST00000340171.2	chr3	155485306:155485458:155493489:155493637:155520320:155520380,	155493490	155493637	155493633	155493633	Nonsense_Mutation	G	C	p.S60*
LUSC	TCGA-43-6770-01	SERPINB6	ENST00000380546.3,ENST00000380520.1,ENST00000335686.5,ENST00000380524.1,ENST00000380529.1,ENST00000380539.1	chr6	2953277:2953420:2954825:2954943:2955757:2955904,	2954826	2954943	2954829	2954829	Nonsense_Mutation	C	A	p.E143*
LUSC	TCGA-43-6770-01	AP3B2	ENST00000535359.1,ENST00000261722.3,ENST00000535348.1,ENST00000543938.1	chr15	83330919:83331004:83331445:83331674:83331878:83331985,	83331446	83331674	83331597	83331597	Nonsense_Mutation	G	T	p.Y894*
LUSC	TCGA-43-6770-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300974	21300974	Nonsense_Mutation	C	T	p.Q502*
LUSC	TCGA-43-6771-01	MTMR12	ENST00000505419.1	chr5	32271938:32272011:32274085:32274228:32312863:32313030,	32274086	32274228	32274181	32274181	Nonsense_Mutation	C	A	p.E64*
LUSC	TCGA-43-6771-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879648	104879648	Nonsense_Mutation	G	A	p.Q36*
LUSC	TCGA-43-6771-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879648	104879648	Nonsense_Mutation	G	A	p.Q36*
LUSC	TCGA-46-3765-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678881	73678881	Nonsense_Mutation	C	T	p.Q1742*
LUSC	TCGA-46-3765-01	TANK	ENST00000392749.2,ENST00000259075.2	chr2	162081141:162081257:162087481:162088062:162091852:162091892,	162087482	162088062	162087607	162087607	Nonsense_Mutation	G	T	p.G216*
LUSC	TCGA-46-3765-01	AFF1	ENST00000511442.1,ENST00000507468.1,ENST00000395146.4,ENST00000503477.1	chr4	87928420:87928576:87967317:87967438:87967846:87968042,87869649:87869723:87967317:87967438:87967846:87968042,	87967318	87967438	87967424	87967424	Nonsense_Mutation	G	T	p.G49*
LUSC	TCGA-46-3765-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927172	41927172	Nonsense_Mutation	G	T	p.G83*
LUSC	TCGA-46-3765-01	CCM2	ENST00000544363.1,ENST00000474617.1	chr7	45109424:45109560:45112324:45112382:45113058:45113118,45104201:45104245:45112324:45112382:45113058:45113118,	45112325	45112382	45112369	45112369	Nonsense_Mutation	G	T	p.E285*
LUSC	TCGA-46-3765-01	STAM	ENST00000540523.1	chr10	17702462:17702547:17730025:17730172:17735220:17735280,	17730026	17730172	17730044	17730044	Nonsense_Mutation	G	T	p.E106*
LUSC	TCGA-46-3765-01	C11orf49	ENST00000527667.1	chr11	47008758:47008861:47073938:47074069:47159195:47159280,46958330:46958402:47073938:47074069:47159195:47159280,47013093:47013198:47073938:47074069:47159195:47159280,	47073939	47074069	47073976	47073976	Nonsense_Mutation	C	T	p.R63*
LUSC	TCGA-46-3765-01	GRAMD1B	ENST00000529750.1,ENST00000534764.1,ENST00000532581.1,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123474133:123474249:123476029:123476186:123477316:123477506,	123476030	123476186	123476185	123476185	Nonsense_Mutation	C	A	p.S305_splice
LUSC	TCGA-46-3765-01	CORO1C	ENST00000420959.2,ENST00000261401.3,ENST00000550542.1,ENST00000421578.2,ENST00000549772.1,ENST00000541050.1,ENST00000546705.1	chr12	109042462:109042626:109042738:109042796:109046047:109046121,	109042739	109042796	109042780	109042780	Nonsense_Mutation	C	A	p.E393*
LUSC	TCGA-46-3765-01	CRELD2	ENST00000404488.3,ENST00000483652.1,ENST00000328268.4	chr22	50316259:50316355:50318007:50318103:50319064:50319205,50316881:50316965:50318007:50318103:50319064:50319205,	50318008	50318103	50318061	50318061	Nonsense_Mutation	G	T	p.E325*
LUSC	TCGA-46-3767-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000471121.1,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65423205:65423419:65427036:65427176:65427956:65428088,	65427037	65427176	65427158	65427158	Nonsense_Mutation	G	T	p.E859*
LUSC	TCGA-46-3768-01	EPS8L3	ENST00000472325.1	chr1	110301902:110302009:110302299:110302520:110304116:110304181,	110302300	110302520	110302413	110302413	Nonsense_Mutation	C	A	p.E48*
LUSC	TCGA-46-3768-01	EPS8L3	ENST00000361965.4,ENST00000361852.4,ENST00000369805.3	chr1	110301902:110302009:110302299:110302458:110304116:110304181,	110302300	110302458	110302413	110302413	Nonsense_Mutation	C	A	p.E48*
LUSC	TCGA-46-3768-01	SLC4A1AP	ENST00000427424.1	chr2	27887333:27887444:27887966:27888162:27890134:27890257,	27887967	27888162	27887973	27887973	Nonsense_Mutation	G	T	p.E278*
LUSC	TCGA-46-3768-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6,ENST00000423048.1	chr2	73747071:73747143:73761950:73762076:73784346:73784387,73747071:73747143:73761950:73762076:73777393:73777564,	73761951	73762076	73762076	73762076	Nonsense_Mutation	G	T	p.G3302_splice
LUSC	TCGA-46-3768-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000456652.1,ENST00000350198.4,ENST00000427603.1,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102314542:102314599:102314934:102315000:102407181:102407238,	102314935	102315000	102314986	102314986	Nonsense_Mutation	G	T	p.G37*
LUSC	TCGA-46-3768-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32090546	32090546	Nonsense_Mutation	C	A	p.S2331*
LUSC	TCGA-46-3768-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112479933:112480082:112486361:112486478:112493812:112494006,	112486362	112486478	112486384	112486384	Nonsense_Mutation	G	T	p.S549*
LUSC	TCGA-46-3768-01	TES	ENST00000358204.4,ENST00000393481.2,ENST00000393484.2	chr7	115890502:115890550:115891813:115892029:115892371:115892530,	115891814	115892029	115892000	115892000	Nonsense_Mutation	G	T	p.E297*
LUSC	TCGA-46-3768-01	PAN3	ENST00000503791.1,ENST00000380958.3	chr13	28752001:28752072:28794367:28794515:28830428:28830676,28771321:28771483:28794367:28794515:28830428:28830676,	28794368	28794515	28794441	28794441	Nonsense_Mutation	C	A	p.S309*
LUSC	TCGA-46-3768-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847341	28847341	Nonsense_Mutation	C	T	p.Q995*
LUSC	TCGA-46-3768-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847341	28847341	Nonsense_Mutation	C	T	p.Q995*
LUSC	TCGA-46-3768-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847341	28847341	Nonsense_Mutation	C	T	p.Q995*
LUSC	TCGA-46-3768-01	GDI1	ENST00000434049.1,ENST00000485143.1,ENST00000475976.1,ENST00000445564.1,ENST00000481304.1,ENST00000447750.2,ENST00000415109.1,ENST00000491154.1	chrX	153666868:153666976:153667110:153667210:153667351:153667398,	153667111	153667210	153667172	153667172	Nonsense_Mutation	G	A	p.W72*
LUSC	TCGA-46-3769-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000426982.2,ENST00000440579.1	chr1	35919962:35920086:35921613:35921842:35925905:35926038,	35921614	35921842	35921739	35921739	Nonsense_Mutation	G	A	p.Q511*
LUSC	TCGA-46-3769-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214816281	214816281	Nonsense_Mutation	G	T	p.E1534*
LUSC	TCGA-46-3769-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1927027	1927027	Nonsense_Mutation	G	A	p.Q172*
LUSC	TCGA-46-3769-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1927027	1927027	Nonsense_Mutation	G	A	p.Q172*
LUSC	TCGA-46-3769-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33500031:33500157:33500867:33500990:33505105:33505225,	33500868	33500990	33500942	33500942	Nonsense_Mutation	G	T	p.E982*
LUSC	TCGA-46-3769-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177034272	177034272	Nonsense_Mutation	A	T	p.K144*
LUSC	TCGA-46-3769-01	GNPDA2	ENST00000507917.1,ENST00000295448.3,ENST00000509756.1,ENST00000507534.1	chr4	44709768:44709943:44712969:44713154:44719129:44719312,	44712970	44713154	44713028	44713028	Nonsense_Mutation	G	C	p.S179*
LUSC	TCGA-46-3769-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104053849:104054053:104054851:104055049:104057297:104057516,	104054852	104055049	104054854	104054854	Nonsense_Mutation	C	A	p.E2240*
LUSC	TCGA-46-3769-01	TMEM14C	ENST00000495549.1,ENST00000229563.5,ENST00000541412.1	chr6	10723357:10723474:10725193:10725270:10726139:10726241,10724808:10724866:10725193:10725270:10726139:10726241,	10725194	10725270	10725208	10725208	Nonsense_Mutation	G	A	p.W12*
LUSC	TCGA-46-3769-01	BTN3A3	ENST00000244519.2,ENST00000339789.4,ENST00000361232.3,ENST00000487272.1	chr6	26444238:26444532:26445931:26446213:26448475:26448637,	26445932	26446213	26445991	26445991	Nonsense_Mutation	G	T	p.E165*
LUSC	TCGA-46-3769-01	MAP3K5	ENST00000355845.4,ENST00000359015.4	chr6	136883640:136883753:136888768:136889012:136901438:136901544,	136888769	136889012	136888770	136888770	Nonsense_Mutation	T	A	p.R1254_splice
LUSC	TCGA-46-3769-01	PLEKHG1	ENST00000358517.2,ENST00000475490.1,ENST00000367328.1	chr6	151089821:151089874:151107525:151107595:151116991:151117038,	151107526	151107595	151107545	151107545	Nonsense_Mutation	G	T	p.E237*
LUSC	TCGA-46-3769-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022091	11022091	Nonsense_Mutation	G	T	p.E69*
LUSC	TCGA-46-3769-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21468913	21468913	Nonsense_Mutation	C	T	p.Q44*
LUSC	TCGA-46-3769-01	DHTKD1	ENST00000263035.4	chr10	12154898:12155063:12159671:12159754:12160747:12160917,	12159672	12159754	12159705	12159705	Nonsense_Mutation	G	T	p.G785*
LUSC	TCGA-46-3769-01	DNMBP	ENST00000324109.4,ENST00000543621.1	chr10	101654702:101654807:101656023:101656154:101657842:101658019,	101656024	101656154	101656026	101656026	Nonsense_Mutation	G	A	p.Q1017*
LUSC	TCGA-46-3769-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577231	14577231	Nonsense_Mutation	G	T	p.E128*
LUSC	TCGA-46-3769-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51214709:51214823:51219235:51219451:51221280:51221350,	51219236	51219451	51219373	51219373	Nonsense_Mutation	C	A	p.E1605*
LUSC	TCGA-46-3769-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34131112	34131112	Nonsense_Mutation	G	T	p.E4311*
LUSC	TCGA-46-3769-01	BANP	ENST00000497491.1,ENST00000393207.1,ENST00000393208.2,ENST00000479780.2,ENST00000355163.5,ENST00000538234.1,ENST00000355022.4,ENST00000286122.7	chr16	88052033:88052273:88061088:88061256:88066714:88066825,	88061089	88061256	88061218	88061218	Nonsense_Mutation	C	A	p.S334*
LUSC	TCGA-46-3769-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244070	41244070	Nonsense_Mutation	T	A	p.K1160*
LUSC	TCGA-46-3769-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9400453:9400556:9401943:9402108:9404394:9404599,	9401944	9402108	9401951	9401951	Nonsense_Mutation	C	G	p.S709*
LUSC	TCGA-46-3769-01	APP	ENST00000448850.1,ENST00000440126.3,ENST00000357903.3	chr21	27369674:27369731:27372329:27372497:27394155:27394243,27354656:27354790:27372329:27372497:27394155:27394243,	27372330	27372497	27372439	27372439	Nonsense_Mutation	G	C	p.Y308*
LUSC	TCGA-46-3769-01	NF2	ENST00000361676.4	chr22	30032739:30032865:30035078:30035201:30038190:30038274,29999987:30000101:30035078:30035201:30038190:30038274,	30035079	30035201	30035098	30035098	Nonsense_Mutation	C	G	p.S87*
LUSC	TCGA-46-6025-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72891723	72891723	Nonsense_Mutation	C	A	p.E690*
LUSC	TCGA-46-6025-01	PTPN11	ENST00000351677.2,ENST00000392597.1	chr12	112892367:112892484:112893753:112893867:112910747:112910844,	112893754	112893867	112893784	112893784	Nonsense_Mutation	G	T	p.E225*
LUSC	TCGA-46-6025-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610487	10610487	Nonsense_Mutation	G	A	p.Q75*
LUSC	TCGA-46-6026-01	WDTC1	ENST00000447062.2,ENST00000361771.3,ENST00000319394.3	chr1	27589642:27589726:27608729:27608776:27609828:27609940,	27608730	27608776	27608757	27608757	Nonsense_Mutation	G	T	p.E54*
LUSC	TCGA-51-4079-01	REG3A	ENST00000393878.1,ENST00000409839.3,ENST00000305165.2	chr2	79384697:79384824:79385451:79385589:79385776:79385895,	79385452	79385589	79385532	79385532	Nonsense_Mutation	C	A	p.G85*
LUSC	TCGA-51-4079-01	ABI3BP	ENST00000495063.1,ENST00000284322.5,ENST00000533855.1,ENST00000471714.1	chr3	100569503:100569578:100570718:100570784:100581154:100581229,	100570719	100570784	100570766	100570766	Nonsense_Mutation	G	C	p.S393*
LUSC	TCGA-51-4079-01	CDH18	ENST00000502796.1	chr5	19473723:19473825:19483409:19483552:19503100:19503218,	19483410	19483552	19483469	19483469	Nonsense_Mutation	G	T	p.S608*
LUSC	TCGA-51-4079-01	CDH18	ENST00000382275.1,ENST00000507958.1,ENST00000274170.4	chr5	19473723:19473825:19483409:19483661:19503100:19503218,	19483410	19483661	19483469	19483469	Nonsense_Mutation	G	T	p.S608*
LUSC	TCGA-51-4079-01	CDH18	ENST00000506372.1	chr5	19473723:19473825:19483409:19483555:19503100:19503218,	19483410	19483555	19483469	19483469	Nonsense_Mutation	G	T	p.S608*
LUSC	TCGA-51-4079-01	SHC3	ENST00000375835.4	chr9	91628059:91628490:91652907:91653203:91656940:91657052,	91652908	91653203	91653064	91653064	Nonsense_Mutation	G	C	p.Y500*
LUSC	TCGA-51-4079-01	EHMT1	ENST00000494249.1,ENST00000475564.1,ENST00000460843.1	chr9	140711890:140711977:140712511:140712590:140728800:140728976,	140712512	140712590	140712552	140712552	Nonsense_Mutation	C	T	p.R1168*
LUSC	TCGA-51-4080-01	RICTOR	ENST00000511516.1,ENST00000357387.3,ENST00000296782.5	chr5	38960499:38960635:38962416:38962463:38962586:38962688,	38962417	38962463	38962427	38962427	Nonsense_Mutation	G	A	p.Q569*
LUSC	TCGA-51-4080-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
LUSC	TCGA-51-4080-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
LUSC	TCGA-51-4081-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000435888.1	chr3	183584412:183584553:183585652:183585848:183602509:183602515,	183585653	183585848	183585724	183585724	Nonsense_Mutation	C	A	p.E84*
LUSC	TCGA-56-1622-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000434513.1,ENST00000475356.1,ENST00000167825.4,ENST00000452522.1	chr1	17983048:17983203:17990941:17991090:18014067:18014242,	17990942	17991090	17991036	17991036	Nonsense_Mutation	G	A	p.W985*
LUSC	TCGA-56-1622-01	SYNGR4	ENST00000344846.2	chr19	48876773:48877011:48878869:48879009:48879341:48879528,	48878870	48879009	48878904	48878904	Nonsense_Mutation	C	A	p.C122*
LUSC	TCGA-56-5897-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685281	89685281	Nonsense_Mutation	C	G	p.S59*
LUSC	TCGA-56-5897-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LUSC	TCGA-56-5897-01	C3	ENST00000596548.1	chr19	6682152:6682240:6684398:6684489:6684570:6684643,	6684399	6684489	6684439	6684439	Nonsense_Mutation	G	A	p.Q1378*
LUSC	TCGA-56-5897-01	C3	ENST00000245907.6	chr19	6682152:6682240:6684398:6684450:6684570:6684643,	6684399	6684450	6684439	6684439	Nonsense_Mutation	G	A	p.Q1378*
LUSC	TCGA-56-5898-01	TCP1	ENST00000544255.1,ENST00000392168.2,ENST00000321394.7	chr6	160200016:160200293:160200658:160200822:160200926:160201112,	160200659	160200822	160200659	160200659	Nonsense_Mutation	C	T	p.W485_splice
LUSC	TCGA-56-5898-01	DDC	ENST00000444733.1	chr7	50596905:50597040:50605557:50605677:50611582:50611680,	50605558	50605677	50605614	50605614	Nonsense_Mutation	C	A	p.E127*
LUSC	TCGA-56-6545-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469531	21469531	Nonsense_Mutation	C	T	p.Q250*
LUSC	TCGA-56-6545-01	STAT3	ENST00000585517.1,ENST00000264657.5,ENST00000389272.3,ENST00000588969.1	chr17	40469199:40469242:40474299:40474512:40475021:40475161,	40474300	40474512	40474455	40474455	Nonsense_Mutation	G	C	p.S649*
LUSC	TCGA-56-6545-01	STAT3	ENST00000404395.3	chr17	40469199:40469242:40474302:40474512:40475021:40475161,	40474303	40474512	40474455	40474455	Nonsense_Mutation	G	C	p.S649*
LUSC	TCGA-56-6545-01	TGM3	ENST00000381458.5	chr20	2306494:2306598:2308765:2309011:2312647:2312956,	2308766	2309011	2308908	2308908	Nonsense_Mutation	G	A	p.W410*
LUSC	TCGA-56-6546-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000517930.1,ENST00000276609.3,ENST00000309536.2,ENST00000522181.1	chr8	92375699:92375766:92378807:92378945:92382012:92382061,	92378808	92378945	92378879	92378879	Nonsense_Mutation	T	A	p.Y520*
LUSC	TCGA-56-6546-01	CD163	ENST00000359156.4	chr12	7632455:7632592:7633756:7633852:7635238:7635325,	7633757	7633852	7633838	7633838	Nonsense_Mutation	C	A	p.E1088*
LUSC	TCGA-56-6546-01	COG4	ENST00000323786.5,ENST00000526700.1,ENST00000482252.1,ENST00000564415.1,ENST00000530314.1	chr16	70531123:70531290:70531839:70531958:70534860:70534992,	70531840	70531958	70531872	70531872	Nonsense_Mutation	C	A	p.E428*
LUSC	TCGA-60-2698-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944340	235944340	Nonsense_Mutation	G	C	p.S1680*
LUSC	TCGA-60-2698-01	NMI	ENST00000243346.5	chr2	152131997:152132184:152132271:152132378:152135341:152135504,	152132272	152132378	152132274	152132274	Nonsense_Mutation	G	A	p.Q149*
LUSC	TCGA-60-2698-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230636234:230636348:230638812:230638977:230642030:230642195,	230638813	230638977	230638827	230638827	Nonsense_Mutation	C	A	p.E1867*
LUSC	TCGA-60-2698-01	ARL6	ENST00000335979.2,ENST00000463745.1,ENST00000493990.1,ENST00000394206.1	chr3	97506833:97506963:97510614:97510670:97516867:97517047,	97510615	97510670	97510649	97510649	Nonsense_Mutation	G	T	p.E172*
LUSC	TCGA-60-2698-01	KALRN	ENST00000354186.4,ENST00000360013.3	chr3	124215157:124215260:124281689:124281936:124351266:124351445,	124281690	124281936	124281801	124281801	Nonsense_Mutation	G	T	p.E1681*
LUSC	TCGA-60-2698-01	KY	ENST00000423778.2,ENST00000503669.1	chr3	134348462:134348537:134362157:134362220:134366276:134366339,	134362158	134362220	134362194	134362194	Nonsense_Mutation	G	A	p.Q76*
LUSC	TCGA-60-2698-01	SMC4	ENST00000344722.5,ENST00000462787.1,ENST00000360111.2,ENST00000357388.3,ENST00000462668.1,ENST00000469762.1	chr3	160149430:160149613:160150070:160150303:160150813:160150997,	160150071	160150303	160150074	160150074	Nonsense_Mutation	G	T	p.E1101*
LUSC	TCGA-60-2698-01	ASPH	ENST00000379454.4,ENST00000445642.3,ENST00000519678.1,ENST00000524173.1,ENST00000518068.1,ENST00000522835.1,ENST00000519234.1,ENST00000517903.1,ENST00000522919.1,ENST00000356457.5,ENST00000523927.1,ENST00000517847.2,ENST00000541428.1	chr8	62555944:62555992:62556503:62556560:62557158:62557191,	62556504	62556560	62556543	62556543	Nonsense_Mutation	G	A	p.Q224*
LUSC	TCGA-60-2698-01	CCAR1	ENST00000543225.1	chr10	70500385:70500418:70502132:70502326:70506917:70507032,70496632:70496805:70502132:70502326:70506917:70507032,	70502133	70502326	70502187	70502187	Nonsense_Mutation	C	T	p.Q127*
LUSC	TCGA-60-2698-01	CCAR1	ENST00000543229.1	chr10	70496632:70496805:70502184:70502326:70506917:70507032,	70502185	70502326	70502187	70502187	Nonsense_Mutation	C	T	p.Q127*
LUSC	TCGA-60-2698-01	LDB3	ENST00000361373.4,ENST00000263066.6,ENST00000352360.5,ENST00000458213.2,ENST00000429277.2	chr10	88478486:88478604:88485893:88486009:88492643:88495822,	88485894	88486009	88485898	88485898	Nonsense_Mutation	C	A	p.Y661*
LUSC	TCGA-60-2698-01	ADD3	ENST00000356080.4	chr10	111890120:111890244:111892062:111892158:111893083:111893106,	111892063	111892158	111892125	111892125	Nonsense_Mutation	C	T	p.Q599*
LUSC	TCGA-60-2698-01	PLEKHA7	ENST00000355661.3,ENST00000531066.1,ENST00000448080.2	chr11	16847666:16848137:16863093:16863269:16872737:16872834,	16863094	16863269	16863215	16863215	Nonsense_Mutation	G	A	p.Q251*
LUSC	TCGA-60-2698-01	PLXNC1	ENST00000258526.4,ENST00000551850.1,ENST00000546733.1	chr12	94562928:94563069:94575221:94575356:94580148:94580249,	94575222	94575356	94575247	94575247	Nonsense_Mutation	C	G	p.S410*
LUSC	TCGA-60-2698-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2,ENST00000549875.1	chr12	112308888:112308984:112318250:112318331:112321384:112321572,	112318251	112318331	112318306	112318306	Nonsense_Mutation	C	A	p.S212*
LUSC	TCGA-60-2698-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55651990	55651990	Nonsense_Mutation	G	A	p.Q661*
LUSC	TCGA-60-2698-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
LUSC	TCGA-60-2698-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000460276.1,ENST00000436828.1,ENST00000395851.1,ENST00000268712.3	chr17	16062073:16062187:16068292:16068475:16075116:16075309,	16068293	16068475	16068381	16068381	Nonsense_Mutation	G	C	p.S177*
LUSC	TCGA-60-2698-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38418776:38418893:38420741:38421398:38430041:38430251,	38420742	38421398	38421164	38421164	Nonsense_Mutation	C	T	p.Q246*
LUSC	TCGA-60-2698-01	PLEKHM1	ENST00000446609.2,ENST00000579197.1,ENST00000421073.2	chr17	43545611:43545959:43552465:43553092:43559802:43559891,	43552466	43553092	43552914	43552914	Nonsense_Mutation	C	A	p.E159*
LUSC	TCGA-60-2698-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9254208:9258929:9263787:9263886:9275521:9275665,	9263788	9263886	9263833	9263833	Nonsense_Mutation	C	T	p.R1904*
LUSC	TCGA-60-2698-01	KIRREL2	ENST00000360202.5,ENST00000262625.7,ENST00000586102.3,ENST00000592409.1	chr19	36348007:36348082:36348246:36348396:36349309:36349459,	36348247	36348396	36348353	36348353	Nonsense_Mutation	G	A	p.W56*
LUSC	TCGA-60-2698-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53581593:53581881:53584342:53584388:53585615:53585770,	53584343	53584388	53584372	53584372	Nonsense_Mutation	G	C	p.S2726*
LUSC	TCGA-60-2707-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29677200:29677336:29679274:29679432:29683477:29683529,	29679275	29679432	29679291	29679291	Nonsense_Mutation	C	T	p.Q2492*
LUSC	TCGA-60-2708-01	CSRNP1	ENST00000514182.1,ENST00000273153.5	chr3	39185457:39185535:39185627:39185942:39186487:39186747,	39185628	39185942	39185792	39185792	Nonsense_Mutation	G	A	p.R206*
LUSC	TCGA-60-2708-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232283	132232283	Nonsense_Mutation	G	T	p.S680*
LUSC	TCGA-60-2708-01	EPB41L2	ENST00000368128.2,ENST00000530481.1,ENST00000525193.1,ENST00000528282.1,ENST00000529208.1,ENST00000445890.2,ENST00000525271.1,ENST00000392427.3,ENST00000527411.1,ENST00000527659.1,ENST00000337057.3	chr6	131247744:131247849:131276244:131276457:131277133:131277625,	131276245	131276457	131276358	131276358	Nonsense_Mutation	G	A	p.Q198*
LUSC	TCGA-60-2708-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107618491:107618612:107621053:107621256:107626466:107626530,	107621054	107621256	107621203	107621203	Nonsense_Mutation	C	A	p.G268*
LUSC	TCGA-60-2708-01	SHF	ENST00000290894.8	chr15	45470362:45470504:45490969:45491318:45492924:45493069,	45490970	45491318	45491044	45491044	Nonsense_Mutation	T	A	p.K77*
LUSC	TCGA-60-2710-01	MEF2D	ENST00000360595.3,ENST00000368240.2,ENST00000348159.4	chr1	156449377:156449588:156450625:156450763:156452228:156452432,	156450626	156450763	156450724	156450724	Nonsense_Mutation	C	A	p.E100*
LUSC	TCGA-60-2710-01	IRF6	ENST00000542854.1,ENST00000367021.3	chr1	209963011:209963130:209963839:209964232:209965613:209965772,	209963840	209964232	209964185	209964185	Nonsense_Mutation	G	A	p.Q239*
LUSC	TCGA-60-2710-01	EIF4E3	ENST00000448225.1,ENST00000425534.3,ENST00000295612.3,ENST00000497838.1,ENST00000469524.1,ENST00000496214.2,ENST00000389826.3,ENST00000421769.2	chr3	71743047:71743092:71745610:71745671:71748764:71748859,	71745611	71745671	71745664	71745664	Nonsense_Mutation	C	A	p.E118*
LUSC	TCGA-60-2710-01	ABHD4	ENST00000428304.2,ENST00000216327.6	chr14	23072505:23072667:23072829:23072984:23075327:23075439,	23072830	23072984	23072983	23072983	Nonsense_Mutation	G	A	p.G214_splice
LUSC	TCGA-60-2711-01	CWH43	ENST00000513409.1,ENST00000226432.4	chr4	49000476:49000565:49005751:49006009:49009217:49009343,	49005752	49006009	49005780	49005780	Nonsense_Mutation	C	A	p.Y277*
LUSC	TCGA-60-2711-01	TEX10	ENST00000535814.1	chr9	103064367:103064586:103065913:103066067:103070781:103070963,	103065914	103066067	103066024	103066024	Nonsense_Mutation	C	A	p.E856*
LUSC	TCGA-60-2711-01	TEX10	ENST00000374902.4	chr9	103064367:103064586:103065913:103066124:103070781:103070963,	103065914	103066124	103066024	103066024	Nonsense_Mutation	C	A	p.E856*
LUSC	TCGA-60-2712-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400248.2	chr22	32293467:32293639:32297727:32297788:32301969:32302052,	32297728	32297788	32297747	32297747	Nonsense_Mutation	C	G	p.Y1465*
LUSC	TCGA-60-2713-01	TCTEX1D1	ENST00000282670.2,ENST00000528352.1	chr1	67218214:67218267:67220338:67220460:67236069:67236161,	67220339	67220460	67220352	67220352	Nonsense_Mutation	C	G	p.S4*
LUSC	TCGA-60-2713-01	EEF1B2	ENST00000392221.1,ENST00000455150.1,ENST00000392222.2,ENST00000236957.5,ENST00000445505.1	chr2	207025610:207025856:207026069:207026196:207026761:207026801,207025311:207025434:207026069:207026196:207026761:207026801,	207026070	207026196	207026083	207026083	Nonsense_Mutation	A	T	p.K73*
LUSC	TCGA-60-2713-01	CPB1	ENST00000468341.1,ENST00000282957.4,ENST00000491148.1,ENST00000462345.1,ENST00000465718.1	chr3	148545788:148545864:148552284:148552409:148558472:148558498,	148552285	148552409	148552387	148552387	Nonsense_Mutation	A	T	p.K84*
LUSC	TCGA-60-2713-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7635561:7635600:7635962:7636271:7637691:7637940,	7635963	7636271	7636217	7636217	Nonsense_Mutation	C	T	p.W945*
LUSC	TCGA-60-2713-01	DNM2	ENST00000587830.2,ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000585892.1,ENST00000359692.6,ENST00000591701.1	chr19	10897239:10897382:10904395:10904531:10906047:10906115,	10904396	10904531	10904484	10904484	Nonsense_Mutation	C	T	p.R361*
LUSC	TCGA-60-2713-01	USP25	ENST00000285679.6	chr21	17205666:17205867:17214716:17214859:17236586:17236765,	17214717	17214859	17214842	17214842	Nonsense_Mutation	G	T	p.E774*
LUSC	TCGA-60-2715-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539060	187539060	Nonsense_Mutation	C	A	p.E2894*
LUSC	TCGA-60-2715-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618689	618689	Nonsense_Mutation	G	A	p.Q624*
LUSC	TCGA-60-2715-01	PYGM	ENST00000164139.3	chr11	64525250:64525382:64525717:64525821:64525908:64525987,	64525718	64525821	64525759	64525759	Nonsense_Mutation	C	A	p.E163*
LUSC	TCGA-60-2715-01	GGT7	ENST00000336431.5	chr20	33449247:33449365:33450616:33450768:33451115:33451351,	33450617	33450768	33450711	33450711	Nonsense_Mutation	C	A	p.E155*
LUSC	TCGA-60-2719-01	TAPBP	ENST00000426633.2,ENST00000489157.1,ENST00000456592.2,ENST00000475304.1,ENST00000434618.2	chr6	33271904:33271994:33272073:33272415:33272765:33272838,	33272074	33272415	33272137	33272137	Nonsense_Mutation	G	A	p.R383*
LUSC	TCGA-60-2719-01	GRHPR	ENST00000460882.1,ENST00000487399.1	chr9	37422742:37422830:37424841:37424972:37425918:37425991,37422710:37422802:37424841:37424972:37425918:37425990,	37424842	37424972	37424897	37424897	Nonsense_Mutation	C	T	p.R47*
LUSC	TCGA-60-2719-01	PPP2R1A	ENST00000462990.1,ENST00000322088.6,ENST00000444322.2	chr19	52719781:52719916:52722943:52723117:52723441:52723502,	52722944	52723117	52723043	52723043	Nonsense_Mutation	G	T	p.E410*
LUSC	TCGA-60-2720-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235950606	235950606	Nonsense_Mutation	C	G	p.S398*
LUSC	TCGA-60-2720-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158924188	158924188	Nonsense_Mutation	C	T	p.R1165*
LUSC	TCGA-60-2720-01	DPY19L4	ENST00000520774.1,ENST00000519176.1,ENST00000414645.2,ENST00000519353.1	chr8	95738629:95738669:95751640:95751762:95751872:95751953,95750596:95750687:95751640:95751762:95751872:95751953,	95751641	95751762	95751682	95751682	Nonsense_Mutation	A	T	p.K129*
LUSC	TCGA-60-2720-01	RHEBL1	ENST00000550675.1	chr12	49460401:49460484:49460738:49460818:49462817:49462889,	49460739	49460818	49460814	49460814	Nonsense_Mutation	G	C	p.Y43*
LUSC	TCGA-60-2720-01	RHEBL1	ENST00000301068.6,ENST00000550797.1	chr12	49460401:49460484:49460750:49460818:49462817:49462889,	49460751	49460818	49460814	49460814	Nonsense_Mutation	G	C	p.Y43*
LUSC	TCGA-60-2720-01	ACIN1	ENST00000555053.1,ENST00000262710.1,ENST00000605057.1,ENST00000457657.1	chr14	23559730:23559842:23562687:23562753:23564183:23564362,	23562688	23562753	23562722	23562722	Nonsense_Mutation	G	C	p.S115*
LUSC	TCGA-60-2720-01	BRD1	ENST00000404760.1	chr22	50197851:50198008:50216598:50217979:50221144:50221160,	50216599	50217979	50217446	50217446	Nonsense_Mutation	T	A	p.K174*
LUSC	TCGA-60-2721-01	ANKH	ENST00000284268.6	chr5	14755969:14756053:14758588:14758707:14769083:14769300,	14758589	14758707	14758688	14758688	Nonsense_Mutation	G	C	p.Y111*
LUSC	TCGA-60-2721-01	SLC15A4	ENST00000376744.4,ENST00000539703.1	chr12	129294487:129294598:129299319:129299615:129307942:129308067,129293940:129294018:129299319:129299615:129307942:129308067,	129299320	129299615	129299345	129299345	Nonsense_Mutation	G	A	p.R273*
LUSC	TCGA-60-2721-01	EEF2K	ENST00000263026.5	chr16	22284946:22285071:22291518:22291697:22295207:22297954,	22291519	22291697	22291592	22291592	Nonsense_Mutation	G	T	p.E655*
LUSC	TCGA-60-2721-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204*
LUSC	TCGA-60-2722-01	TOP3A	ENST00000542570.1,ENST00000582981.1	chr17	18210204:18210280:18212195:18212255:18217912:18218017,	18212196	18212255	18212202	18212202	Nonsense_Mutation	A	C	p.Y78*
LUSC	TCGA-60-2722-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154258	19154258	Nonsense_Mutation	T	A	p.K183*
LUSC	TCGA-60-2723-01	ANAPC1	ENST00000427997.1,ENST00000341068.3	chr2	112545810:112545897:112549938:112550132:112551654:112551708,	112549939	112550132	112550114	112550114	Nonsense_Mutation	C	A	p.E1513*
LUSC	TCGA-60-2723-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42360618	42360618	Nonsense_Mutation	C	A	p.C517*
LUSC	TCGA-60-2723-01	SPRED1	ENST00000561205.1	chr15	38545381:38545418:38591573:38591748:38614441:38614610,	38591574	38591748	38591692	38591692	Nonsense_Mutation	G	T	p.E51*
LUSC	TCGA-60-2723-01	EML2	ENST00000590819.1	chr19	46124811:46124895:46127976:46128076:46129962:46130010,46124464:46124590:46127976:46128076:46129962:46130010,	46127977	46128076	46127984	46127984	Nonsense_Mutation	C	T	p.W479*
LUSC	TCGA-60-2724-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54682213:54682303:54684548:54684727:54708206:54708321,	54684549	54684727	54684613	54684613	Nonsense_Mutation	C	A	p.E329*
LUSC	TCGA-60-2724-01	PLCB3	ENST00000279230.6,ENST00000540288.1	chr11	64022219:64022288:64022369:64022510:64022705:64022785,	64022370	64022510	64022421	64022421	Nonsense_Mutation	G	T	p.E100*
LUSC	TCGA-60-2724-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000377559.3,ENST00000409571.1	chr11	64416205:64416379:64417919:64418110:64418726:64419108,	64417920	64418110	64418069	64418069	Nonsense_Mutation	A	T	p.L987*
LUSC	TCGA-60-2724-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	7955118:7955412:8069683:8069992:8076452:8076562,	8069684	8069992	8069965	8069965	Nonsense_Mutation	G	T	p.E472*
LUSC	TCGA-60-2726-01	MAPKAPK3	ENST00000357955.2,ENST00000446044.1,ENST00000430409.1	chr3	50655140:50655215:50677796:50677936:50679137:50679202,	50677797	50677936	50677815	50677815	Nonsense_Mutation	A	T	p.K80*
LUSC	TCGA-60-2726-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
LUSC	TCGA-60-2726-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
LUSC	TCGA-60-2726-01	FRY	ENST00000380250.3	chr13	32698931:32699012:32705808:32705977:32709040:32709133,	32705809	32705977	32705840	32705840	Nonsense_Mutation	G	T	p.E250*
LUSC	TCGA-60-2726-01	SREBF2	ENST00000361204.4,ENST00000424354.1,ENST00000491541.1	chr22	42289120:42289289:42290823:42290941:42293055:42293165,	42290824	42290941	42290907	42290907	Nonsense_Mutation	A	T	p.K821*
LUSC	TCGA-63-5128-01	ARHGEF2	ENST00000368316.1,ENST00000361247.4,ENST00000313695.7,ENST00000313667.4,ENST00000368315.4,ENST00000474428.2,ENST00000462460.2	chr1	155928110:155928187:155931451:155931700:155931895:155932013,	155931452	155931700	155931629	155931629	Nonsense_Mutation	C	A	p.E475*
LUSC	TCGA-63-5128-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453329	195453329	Nonsense_Mutation	C	T	p.R448*
LUSC	TCGA-63-5128-01	SUV39H2	ENST00000354919.6	chr10	14923498:14923644:14938844:14939516:14941537:14941684,	14938845	14939516	14939359	14939359	Nonsense_Mutation	C	G	p.S231*
LUSC	TCGA-63-5128-01	PELI3	ENST00000320740.7,ENST00000349459.6,ENST00000526296.1,ENST00000524466.1	chr11	66238712:66238842:66239839:66239941:66240711:66240906,	66239840	66239941	66239871	66239871	Nonsense_Mutation	C	A	p.S129*
LUSC	TCGA-63-5131-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192563	211192563	Nonsense_Mutation	G	C	p.Y198*
LUSC	TCGA-63-5131-01	KCNH1	ENST00000367007.4	chr1	211092981:211093411:211192205:211192598:211256121:211256240,	211192206	211192598	211192563	211192563	Nonsense_Mutation	G	C	p.Y198*
LUSC	TCGA-63-5131-01	NMI	ENST00000491771.1	chr2	152135341:152135504:152139381:152139468:152146106:152146377,	152139382	152139468	152139423	152139423	Nonsense_Mutation	C	A	p.E14*
LUSC	TCGA-63-5131-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8751741	8751741	Nonsense_Mutation	C	A	p.G366*
LUSC	TCGA-63-5131-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000337174.3,ENST00000402834.4,ENST00000392474.2,ENST00000324774.5,ENST00000392473.2,ENST00000545538.1	chr12	121682942:121683043:121686408:121686537:121687589:121687677,	121686409	121686537	121686468	121686468	Nonsense_Mutation	C	A	p.E465*
LUSC	TCGA-63-5131-01	PPP1R13B	ENST00000202556.9,ENST00000554136.1,ENST00000557082.1,ENST00000555734.1	chr14	104245091:104245158:104251131:104251251:104263707:104263855,	104251132	104251251	104251219	104251219	Nonsense_Mutation	C	A	p.E64*
LUSC	TCGA-63-6202-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32474675:32476670:32477487:32477748:32481843:32481962,	32477488	32477748	32477621	32477621	Nonsense_Mutation	G	T	p.C43*
LUSC	TCGA-63-6202-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102211	168102211	Nonsense_Mutation	C	T	p.R1437*
LUSC	TCGA-66-2727-01	PRLR	ENST00000509839.1,ENST00000513753.1,ENST00000382002.5,ENST00000514206.1,ENST00000503330.1,ENST00000542609.1,ENST00000310101.5,ENST00000348262.3	chr5	35084636:35084741:35086309:35086442:35089652:35089722,	35086310	35086442	35086375	35086375	Nonsense_Mutation	G	T	p.C46*
LUSC	TCGA-66-2727-01	TYR	ENST00000263321.5	chr11	88960990:88961138:89017940:89018122:89028310:89028476,	89017941	89018122	89017960	89017960	Nonsense_Mutation	C	T	p.R402*
LUSC	TCGA-66-2727-01	CALR	ENST00000316448.5,ENST00000586760.1	chr19	13051405:13051468:13051557:13051701:13054350:13054443,	13051558	13051701	13051633	13051633	Nonsense_Mutation	G	T	p.E298*
LUSC	TCGA-66-2734-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373648	242373648	Nonsense_Mutation	G	T	p.E315*
LUSC	TCGA-66-2734-01	SCUBE3	ENST00000394681.1,ENST00000274938.7	chr6	35213720:35213873:35213982:35214062:35216332:35218609,	35213983	35214062	35214015	35214015	Nonsense_Mutation	C	T	p.R929*
LUSC	TCGA-66-2734-01	SEC23A	ENST00000307712.6,ENST00000556092.1,ENST00000548032.2,ENST00000545328.2	chr14	39562390:39562448:39565101:39565343:39572235:39572279,	39565102	39565343	39565184	39565184	Nonsense_Mutation	C	A	p.E47*
LUSC	TCGA-66-2734-01	WDR76	ENST00000381246.2,ENST00000263795.6	chr15	44136098:44136252:44143284:44143443:44149143:44149361,	44143285	44143443	44143306	44143306	Nonsense_Mutation	G	T	p.G352*
LUSC	TCGA-66-2734-01	RAB34	ENST00000415040.2	chr17	27042658:27042723:27042817:27042919:27043920:27044012,	27042818	27042919	27042864	27042864	Nonsense_Mutation	C	A	p.E147*
LUSC	TCGA-66-2734-01	ZNF430	ENST00000599548.1,ENST00000595833.1,ENST00000594110.1,ENST00000595401.1	chr19	21203522:21203609:21205594:21205687:21216261:21216388,	21205595	21205687	21205610	21205610	Nonsense_Mutation	G	T	p.G7*
LUSC	TCGA-66-2734-01	ACSL4	ENST00000504980.1	chrX	108926097:108926125:108926364:108926781:108976367:108976442,108926097:108926125:108926364:108926781:108939372:108939425,	108926365	108926781	108926550	108926550	Nonsense_Mutation	C	A	p.G56*
LUSC	TCGA-66-2734-01	ACSL4	ENST00000469796.2	chrX	108926097:108926125:108926364:108926895:108976367:108976442,108926097:108926125:108926364:108926895:108939372:108939425,	108926365	108926895	108926550	108926550	Nonsense_Mutation	C	A	p.G56*
LUSC	TCGA-66-2734-01	ACSL4	ENST00000348502.6	chrX	108926097:108926125:108926364:108926601:108939372:108939425,	108926365	108926601	108926550	108926550	Nonsense_Mutation	C	A	p.G56*
LUSC	TCGA-66-2734-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961565	135961565	Nonsense_Mutation	C	A	p.G8*
LUSC	TCGA-66-2742-01	ZSCAN20	ENST00000373413.2,ENST00000480917.1	chr1	33938260:33938292:33944779:33945306:33954064:33954251,	33944780	33945306	33945088	33945088	Nonsense_Mutation	G	T	p.E67*
LUSC	TCGA-66-2742-01	CAPN9	ENST00000354537.1	chr1	230907759:230907845:230914718:230914879:230915924:230916082,	230914719	230914879	230914831	230914831	Nonsense_Mutation	G	T	p.G356*
LUSC	TCGA-66-2742-01	SLC20A2	ENST00000520179.1,ENST00000342228.3,ENST00000520262.1	chr8	42287581:42287767:42294506:42295095:42296967:42297171,	42294507	42295095	42294928	42294928	Nonsense_Mutation	C	A	p.E368*
LUSC	TCGA-66-2742-01	MAZ	ENST00000322945.6,ENST00000545521.1,ENST00000219782.6	chr16	29818190:29818214:29818298:29819149:29819550:29819614,	29818299	29819149	29818992	29818992	Nonsense_Mutation	C	T	p.R296*
LUSC	TCGA-66-2742-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573982	7573982	Nonsense_Mutation	C	A	p.E349*
LUSC	TCGA-66-2742-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19344597:19344714:19345791:19345905:19349061:19349220,	19345792	19345905	19345811	19345811	Nonsense_Mutation	C	A	p.C1052*
LUSC	TCGA-66-2744-01	EPHA10	ENST00000373048.4,ENST00000427468.2,ENST00000330210.7,ENST00000446149.2,ENST00000534097.1	chr1	38186454:38186516:38187331:38187517:38188712:38188838,	38187332	38187517	38187350	38187350	Nonsense_Mutation	C	A	p.E710*
LUSC	TCGA-66-2744-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000522380.2,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170351360:170351554:170380600:170380706:170395245:170395381,	170380601	170380706	170380642	170380642	Nonsense_Mutation	G	T	p.G504*
LUSC	TCGA-66-2744-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000396253.3	chr11	18301164:18301489:18303496:18303767:18305341:18305448,	18303497	18303767	18303747	18303747	Nonsense_Mutation	C	A	p.E1027*
LUSC	TCGA-66-2744-01	PLK1	ENST00000562272.1,ENST00000300093.4	chr16	23693384:23693478:23695190:23695410:23698789:23698945,	23695191	23695410	23695281	23695281	Nonsense_Mutation	G	T	p.E303*
LUSC	TCGA-66-2754-01	NEIL2	ENST00000436750.3,ENST00000284503.6,ENST00000455213.2	chr8	11627218:11627300:11637106:11637459:11640711:11640908,11629019:11629094:11637106:11637459:11640711:11640908,	11637107	11637459	11637323	11637323	Nonsense_Mutation	G	T	p.E119*
LUSC	TCGA-66-2754-01	KIAA1958	ENST00000536272.1,ENST00000374244.3	chr9	115249357:115249398:115336336:115337531:115380150:115380234,	115336337	115337531	115337069	115337069	Nonsense_Mutation	A	T	p.K237*
LUSC	TCGA-66-2754-01	GPR158	ENST00000376351.3	chr10	25861577:25861816:25877935:25878074:25883220:25883326,	25877936	25878074	25877958	25877958	Nonsense_Mutation	G	A	p.W592*
LUSC	TCGA-66-2755-01	AJAP1	ENST00000378191.4	chr1	4715104:4715514:4771959:4772759:4829912:4830000,	4771960	4772759	4772135	4772135	Nonsense_Mutation	G	T	p.G69*
LUSC	TCGA-66-2756-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525531	176525531	Nonsense_Mutation	G	T	p.E25*
LUSC	TCGA-66-2756-01	VPS54	ENST00000354504.3,ENST00000409558.4,ENST00000272322.4	chr2	64148339:64148469:64160806:64161147:64169598:64169695,	64160807	64161147	64160937	64160937	Nonsense_Mutation	G	A	p.Q537*
LUSC	TCGA-66-2756-01	EDNRB	ENST00000334286.5,ENST00000377211.4	chr13	78469623:78472469:78473993:78474102:78474655:78474789,	78473994	78474102	78474025	78474025	Nonsense_Mutation	A	T	p.L478*
LUSC	TCGA-66-2756-01	RIN3	ENST00000556385.1,ENST00000216487.7	chr14	93022184:93022300:93043704:93043822:93081751:93081824,	93043705	93043822	93043795	93043795	Nonsense_Mutation	G	T	p.E114*
LUSC	TCGA-66-2756-01	ACSM3	ENST00000562251.1,ENST00000289416.5,ENST00000567387.1,ENST00000450120.2	chr16	20797399:20797480:20801908:20802010:20803323:20803451,	20801909	20802010	20802007	20802007	Nonsense_Mutation	C	G	p.Y470*
LUSC	TCGA-66-2756-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1,ENST00000580882.1	chr17	26969886:26970005:26970181:26970329:26971075:26971205,26969886:26970005:26970181:26970329:26970627:26970677,	26970182	26970329	26970223	26970223	Nonsense_Mutation	C	A	p.E119*
LUSC	TCGA-66-2756-01	KIAA0100	ENST00000577417.1	chr17	26969886:26970005:26970181:26970677:26971075:26971205,	26970182	26970677	26970223	26970223	Nonsense_Mutation	C	A	p.E119*
LUSC	TCGA-66-2756-01	SERPINB13	ENST00000269489.5,ENST00000431153.1,ENST00000479842.1,ENST00000344731.5,ENST00000438844.1	chr18	61254662:61254684:61255884:61256066:61256889:61256946,	61255885	61256066	61256064	61256064	Nonsense_Mutation	G	T	p.E55*
LUSC	TCGA-66-2758-01	CD1E	ENST00000368165.3,ENST00000452291.2,ENST00000444681.2,ENST00000368167.3	chr1	158325621:158325730:158326287:158326381:158326553:158326682,158325683:158325791:158326287:158326381:158326553:158326682,158325616:158325895:158326287:158326381:158326553:158326682,158325616:158325895:158326287:158326381:158326517:158326682,	158326288	158326381	158326363	158326363	Nonsense_Mutation	C	G	p.S327*
LUSC	TCGA-66-2758-01	PIGH	ENST00000561303.1	chr14	68056843:68056889:68059351:68059435:68060459:68060530,68056843:68056889:68059351:68059435:68060444:68060669,	68059352	68059435	68059354	68059354	Nonsense_Mutation	G	A	p.Q158*
LUSC	TCGA-66-2758-01	PIGH	ENST00000560722.1	chr14	68056843:68056889:68059351:68059432:68060459:68060530,	68059352	68059432	68059354	68059354	Nonsense_Mutation	G	A	p.Q158*
LUSC	TCGA-66-2758-01	ABCA3	ENST00000382381.3,ENST00000301732.5,ENST00000563623.1	chr16	2349403:2349533:2350005:2350149:2353969:2354151,	2350006	2350149	2350063	2350063	Nonsense_Mutation	G	C	p.Y518*
LUSC	TCGA-66-2758-01	AFMID	ENST00000589107.1,ENST00000409257.5,ENST00000327898.5,ENST00000591256.1	chr17	76198801:76198832:76200736:76200822:76200908:76200933,	76200737	76200822	76200744	76200744	Nonsense_Mutation	G	T	p.E106*
LUSC	TCGA-66-2759-01	LRRFIP1	ENST00000289175.6,ENST00000498053.1,ENST00000244815.5	chr2	238657841:238657967:238661951:238662122:238664737:238664818,	238661952	238662122	238661985	238661985	Nonsense_Mutation	A	T	p.K173*
LUSC	TCGA-66-2759-01	SWI5	ENST00000608796.1,ENST00000418976.1,ENST00000372898.2,ENST00000320188.5,ENST00000495313.1	chr9	131046788:131046910:131048217:131048312:131050930:131051012,	131048218	131048312	131048234	131048234	Nonsense_Mutation	G	T	p.E189*
LUSC	TCGA-66-2759-01	ENOX2	ENST00000370935.1,ENST00000394363.1,ENST00000338144.3,ENST00000370927.1,ENST00000432489.1	chrX	129803938:129804172:129813515:129813722:129822836:129822992,	129813516	129813722	129813618	129813618	Nonsense_Mutation	C	A	p.E149*
LUSC	TCGA-66-2763-01	WDR33	ENST00000322313.4	chr2	128467266:128467430:128471156:128471595:128474728:128474837,	128471157	128471595	128471191	128471191	Nonsense_Mutation	C	A	p.E1092*
LUSC	TCGA-66-2763-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105470305:105470462:105495239:105495386:105572257:105572508,	105495240	105495386	105495385	105495385	Nonsense_Mutation	G	A	p.R140_splice
LUSC	TCGA-66-2763-01	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156395782	156395782	Nonsense_Mutation	C	G	p.S99*
LUSC	TCGA-66-2763-01	PCMTD1	ENST00000522514.1	chr8	52758220:52758323:52773404:52773806:52811489:52811530,	52773405	52773806	52773687	52773687	Nonsense_Mutation	C	A	p.E9*
LUSC	TCGA-66-2763-01	ADAL	ENST00000428046.3	chr15	43635191:43635273:43638051:43638178:43641104:43641243,	43638052	43638178	43638116	43638116	Nonsense_Mutation	G	T	p.E164*
LUSC	TCGA-66-2763-01	TXLNG	ENST00000398155.4,ENST00000380122.5	chrX	16855715:16855808:16857943:16858039:16859550:16862640,	16857944	16858039	16858001	16858001	Nonsense_Mutation	G	T	p.E404*
LUSC	TCGA-66-2766-01	SNAP47	ENST00000366760.1	chr1	227923136:227923200:227946695:227947186:227954659:227954784,227916407:227916487:227946695:227947186:227954659:227954784,	227946696	227947186	227947172	227947172	Nonsense_Mutation	C	G	p.S370*
LUSC	TCGA-66-2766-01	ARHGEF4	ENST00000532720.1,ENST00000525839.1,ENST00000355771.3,ENST00000409303.1,ENST00000490728.1,ENST00000326016.5,ENST00000392953.3	chr2	131799387:131799517:131801024:131801156:131801871:131802115,	131801025	131801156	131801050	131801050	Nonsense_Mutation	C	G	p.S498*
LUSC	TCGA-66-2766-01	CLDN16	ENST00000264734.2	chr3	190120125:190120228:190122550:190122715:190126102:190126145,	190122551	190122715	190122607	190122607	Nonsense_Mutation	G	T	p.G162*
LUSC	TCGA-66-2766-01	PACRGL	ENST00000503747.1,ENST00000510051.1,ENST00000509469.1,ENST00000471979.2,ENST00000514485.1,ENST00000506745.1,ENST00000507634.1,ENST00000506702.1,ENST00000360916.5,ENST00000503585.1,ENST00000504630.1,ENST00000514663.1,ENST00000467997.2,ENST00000513590.1,ENST00000508952.1,ENST00000295290.8	chr4	20706088:20706156:20706282:20706437:20709425:20709472,	20706283	20706437	20706339	20706339	Nonsense_Mutation	C	T	p.Q85*
LUSC	TCGA-66-2766-01	TANC2	ENST00000424789.2,ENST00000389520.4	chr17	61490903:61490995:61492888:61493035:61495667:61495768,	61492889	61493035	61492927	61492927	Nonsense_Mutation	C	A	p.Y1269*
LUSC	TCGA-66-2766-01	CATSPERG	ENST00000215069.4	chr19	38849151:38849201:38851128:38851287:38851370:38851483,	38851129	38851287	38851187	38851187	Nonsense_Mutation	G	A	p.W556*
LUSC	TCGA-66-2767-01	ADAM12	ENST00000368679.4	chr10	127705666:127705908:127708263:127708394:127724714:127724894,	127708264	127708394	127708298	127708298	Nonsense_Mutation	G	A	p.Q879*
LUSC	TCGA-66-2767-01	DHRS7C	ENST00000330255.5,ENST00000571134.1	chr17	9674750:9675013:9676083:9676239:9680509:9680602,	9676084	9676239	9676195	9676195	Nonsense_Mutation	G	A	p.R207*
LUSC	TCGA-66-2767-01	CD40	ENST00000477696.1,ENST00000466205.1	chr20	44751764:44751858:44755278:44755340:44756776:44756847,44751248:44751395:44755278:44755340:44756776:44756847,	44755279	44755340	44755307	44755307	Nonsense_Mutation	C	T	p.Q176*
LUSC	TCGA-66-2768-01	TAL1	ENST00000371884.2,ENST00000294339.3	chr1	47689743:47689770:47691114:47691561:47694867:47695023,	47691115	47691561	47691494	47691494	Nonsense_Mutation	C	A	p.E23*
LUSC	TCGA-66-2768-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368912.3,ENST00000368913.3	chr1	151107273:151107351:151107638:151107785:151108066:151108240,	151107639	151107785	151107754	151107754	Nonsense_Mutation	G	A	p.R489*
LUSC	TCGA-66-2768-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000537515.1,ENST00000459930.1,ENST00000444005.1	chr2	183594574:183594668:183595756:183595834:183597225:183597269,	183595757	183595834	183595823	183595823	Nonsense_Mutation	C	G	p.S265*
LUSC	TCGA-66-2768-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12071426	12071426	Nonsense_Mutation	G	A	p.R155*
LUSC	TCGA-66-2768-01	EZH1	ENST00000592743.1,ENST00000586103.1,ENST00000585912.1,ENST00000590078.1,ENST00000435174.1,ENST00000415827.2,ENST00000428826.2,ENST00000585893.1,ENST00000585550.1,ENST00000588897.1,ENST00000591330.1	chr17	40857105:40857201:40858024:40858203:40859975:40860101,	40858025	40858203	40858079	40858079	Nonsense_Mutation	C	T	p.W601*
LUSC	TCGA-66-2770-01	AXDND1	ENST00000484883.1,ENST00000367618.3	chr1	179461989:179462086:179478430:179478538:179494468:179494582,	179478431	179478538	179478447	179478447	Nonsense_Mutation	G	A	p.W802*
LUSC	TCGA-66-2770-01	ATP2C1	ENST00000422190.2,ENST00000513801.1,ENST00000533801.2,ENST00000505330.1,ENST00000328560.8,ENST00000359644.3,ENST00000504948.1,ENST00000428331.2,ENST00000510168.1,ENST00000508532.1,ENST00000504381.1,ENST00000393221.4,ENST00000504612.1,ENST00000507488.2	chr3	130653465:130653555:130656271:130656307:130659473:130659535,	130656272	130656307	130656305	130656305	Nonsense_Mutation	C	T	p.Q154*
LUSC	TCGA-66-2770-01	TBC1D19	ENST00000264866.4,ENST00000502873.1,ENST00000511789.1	chr4	26685296:26685371:26689966:26690029:26719554:26719639,	26689967	26690029	26689973	26689973	Nonsense_Mutation	A	T	p.K300*
LUSC	TCGA-66-2770-01	DPYS	ENST00000351513.2	chr8	105393411:105393542:105405011:105405219:105430943:105431082,105393411:105393542:105405011:105405219:105423976:105424043,105393411:105393542:105405011:105405219:105436474:105436617,	105405012	105405219	105405020	105405020	Nonsense_Mutation	G	A	p.R479*
LUSC	TCGA-66-2770-01	SRRM2	ENST00000301740.8	chr16	2818081:2818262:2818997:2819285:2820352:2820466,	2818998	2819285	2819035	2819035	Nonsense_Mutation	C	T	p.R2591*
LUSC	TCGA-66-2771-01	SPATA6	ENST00000371843.3	chr1	48764319:48764565:48771458:48771550:48821341:48821441,48764319:48764565:48771458:48771550:48821389:48821441,	48771459	48771550	48771547	48771547	Nonsense_Mutation	C	A	p.E400*
LUSC	TCGA-66-2771-01	OXNAD1	ENST00000452581.1	chr3	16313165:16313229:16327848:16327955:16336362:16336504,16313651:16313828:16327848:16327955:16336362:16336504,16312451:16312578:16327848:16327955:16336362:16336504,	16327849	16327955	16327951	16327951	Nonsense_Mutation	C	T	p.Q114*
LUSC	TCGA-66-2771-01	GUSB	ENST00000304895.4,ENST00000447929.1,ENST00000466883.1,ENST00000345660.6,ENST00000421103.1,ENST00000430730.1	chr7	65425687:65426050:65429309:65429445:65432717:65432894,	65429310	65429445	65429349	65429349	Nonsense_Mutation	C	A	p.E584*
LUSC	TCGA-66-2771-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62877949:62878013:62887694:62887822:62888795:62888927,	62887695	62887822	62887715	62887715	Nonsense_Mutation	G	T	p.E66*
LUSC	TCGA-66-2771-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202164	56202164	Nonsense_Mutation	G	C	p.S1752*
LUSC	TCGA-66-2771-01	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000379188.3	chrX	24190872:24190917:24197299:24197887:24225442:24225592,	24197300	24197887	24197618	24197618	Nonsense_Mutation	C	A	p.S165*
LUSC	TCGA-66-2773-01	ARPP21	ENST00000187397.4	chr3	35770794:35771028:35778669:35778854:35780808:35781069,	35778670	35778854	35778738	35778738	Nonsense_Mutation	C	T	p.R476*
LUSC	TCGA-66-2773-01	ATXN7	ENST00000487717.1,ENST00000474112.1,ENST00000538065.1,ENST00000295900.6,ENST00000398590.3	chr3	63898838:63898901:63938054:63938159:63965590:63965843,	63938055	63938159	63938123	63938123	Nonsense_Mutation	C	T	p.Q155*
LUSC	TCGA-66-2777-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000609119.1,ENST00000542537.1	chr1	237935311:237935400:237936819:237936948:237941965:237942070,	237936820	237936948	237936937	237936937	Nonsense_Mutation	G	T	p.E3922*
LUSC	TCGA-66-2777-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78766912:78767033:78795892:78796050:78987750:78988077,	78795893	78796050	78796020	78796020	Nonsense_Mutation	G	T	p.S177*
LUSC	TCGA-66-2777-01	PON1	ENST00000433729.1	chr7	94946045:94946101:94947634:94947705:94953713:94953788,	94947635	94947705	94947701	94947701	Nonsense_Mutation	G	A	p.R27*
LUSC	TCGA-66-2778-01	ITGB1BP1	ENST00000488451.1,ENST00000494563.1,ENST00000360635.3,ENST00000492079.1	chr2	9554306:9554385:9558754:9558861:9562607:9562695,9554306:9554385:9558754:9558861:9563094:9563216,9554306:9554385:9558754:9558861:9562930:9563305,9554306:9554385:9558754:9558861:9563501:9563559,9552488:9552534:9558754:9558861:9563501:9563559,9554306:9554385:9558754:9558861:9560118:9560221,	9558755	9558861	9558757	9558757	Nonsense_Mutation	T	A	p.K24*
LUSC	TCGA-66-2778-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603564	111603564	Nonsense_Mutation	C	T	p.Q214*
LUSC	TCGA-66-2780-01	TMEFF2	ENST00000392314.1,ENST00000272771.5,ENST00000409056.3	chr2	193044393:193044420:193049079:193049209:193056605:193056715,	193049080	193049209	193049091	193049091	Nonsense_Mutation	G	T	p.S134*
LUSC	TCGA-66-2780-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425619	77425619	Nonsense_Mutation	G	A	p.Q1269*
LUSC	TCGA-66-2781-01	SPNS1	ENST00000323081.8,ENST00000565975.1,ENST00000568829.1,ENST00000334536.8,ENST00000311008.11,ENST00000352260.7	chr16	28994512:28994611:28995106:28995278:28995525:28995760,	28995107	28995278	28995152	28995152	Nonsense_Mutation	G	T	p.E456*
LUSC	TCGA-66-2781-01	COX4I2	ENST00000376075.3	chr20	30227735:30227900:30231206:30231338:30232570:30232631,	30231207	30231338	30231265	30231265	Nonsense_Mutation	G	A	p.W102*
LUSC	TCGA-66-2782-01	PDE4DIP	ENST00000533768.1,ENST00000524974.1,ENST00000369354.3,ENST00000313382.9,ENST00000525630.1,ENST00000369359.4,ENST00000530062.1,ENST00000369356.4,ENST00000530740.1	chr1	144854517:144854656:144855739:144855883:144856815:144856884,	144855740	144855883	144855817	144855817	Nonsense_Mutation	C	A	p.E2246*
LUSC	TCGA-66-2782-01	RIMS2	ENST00000408894.2	chr8	105105698:105105871:105160834:105161076:105257143:105257285,	105160835	105161076	105161076	105161076	Nonsense_Mutation	G	T	p.E1130_splice
LUSC	TCGA-66-2782-01	NR4A1	ENST00000243050.1,ENST00000360284.3,ENST00000550582.2,ENST00000545748.1,ENST00000394825.1,ENST00000550082.1,ENST00000394824.2,ENST00000550557.1	chr12	52450927:52451043:52451135:52451314:52452471:52452487,	52451136	52451314	52451220	52451220	Nonsense_Mutation	G	A	p.W482*
LUSC	TCGA-66-2782-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577079	7577079	Nonsense_Mutation	C	A	p.E287*
LUSC	TCGA-66-2782-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527558	29527558	Nonsense_Mutation	G	A	p.W336*
LUSC	TCGA-66-2782-01	ZNF750	ENST00000572562.1	chr17	80787804:80788753:80788894:80789362:80797802:80797898,	80788895	80789362	80789004	80789004	Nonsense_Mutation	C	A	p.G443*
LUSC	TCGA-66-2782-01	TRO	ENST00000319167.8,ENST00000445561.1,ENST00000375022.4,ENST00000173898.7	chrX	54948650:54948724:54949010:54950201:54950883:54950988,	54949011	54950201	54949443	54949443	Nonsense_Mutation	G	T	p.E160*
LUSC	TCGA-66-2783-01	RELL2	ENST00000520674.1	chr5	141019030:141019216:141019486:141019862:141019978:141020012,141018361:141018427:141019486:141019862:141019978:141020012,	141019487	141019862	141019704	141019704	Nonsense_Mutation	G	T	p.G241*
LUSC	TCGA-66-2783-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717708	89717708	Nonsense_Mutation	C	T	p.Q245*
LUSC	TCGA-66-2785-01	CLCA2	ENST00000490884.1,ENST00000370565.4	chr1	86905962:86906008:86907119:86907226:86909469:86909694,	86907120	86907226	86907182	86907182	Nonsense_Mutation	A	T	p.R482*
LUSC	TCGA-66-2785-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384287	109384287	Nonsense_Mutation	C	A	p.S2431*
LUSC	TCGA-66-2785-01	TANK	ENST00000392749.2,ENST00000259075.2	chr2	162081141:162081257:162087481:162088062:162091852:162091892,	162087482	162088062	162088022	162088022	Nonsense_Mutation	C	G	p.S354*
LUSC	TCGA-66-2785-01	EDNRA	ENST00000511804.1,ENST00000324300.5	chr4	148441002:148441130:148453657:148453856:148457028:148457181,	148453658	148453856	148453689	148453689	Nonsense_Mutation	C	T	p.Q194*
LUSC	TCGA-66-2785-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152053482:152053535:152054185:152054388:152056225:152056284,	152054186	152054388	152054354	152054354	Nonsense_Mutation	C	A	p.G584*
LUSC	TCGA-66-2785-01	MCC	ENST00000506605.2	chr5	112478914:112479057:112487005:112487119:112676215:112676427,112478914:112479057:112487005:112487119:112630025:112630635,112478914:112479057:112487005:112487119:112538933:112539014,	112487006	112487119	112487112	112487112	Nonsense_Mutation	G	T	p.S212*
LUSC	TCGA-66-2785-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028853	150028853	Nonsense_Mutation	C	G	p.S583*
LUSC	TCGA-66-2785-01	CADPS2	ENST00000412584.2,ENST00000313070.7,ENST00000334010.7,ENST00000449022.2	chr7	122255234:122255353:122261534:122261771:122269301:122269382,	122261535	122261771	122261629	122261629	Nonsense_Mutation	A	C	p.L337*
LUSC	TCGA-66-2785-01	LONRF1	ENST00000525024.1,ENST00000524526.2,ENST00000533751.1,ENST00000398246.3,ENST00000526680.1	chr8	12580489:12580763:12583235:12583388:12586409:12586572,	12583236	12583388	12583331	12583331	Nonsense_Mutation	G	A	p.Q690*
LUSC	TCGA-66-2785-01	BTAF1	ENST00000265990.6	chr10	93743957:93744161:93748910:93749337:93751875:93752066,	93748911	93749337	93749178	93749178	Nonsense_Mutation	C	T	p.Q899*
LUSC	TCGA-66-2785-01	RASSF7	ENST00000454668.2,ENST00000397583.3,ENST00000344375.4,ENST00000397582.3,ENST00000431809.1	chr11	561761:561892:562078:562776:563188:563317,	562079	562776	562244	562244	Nonsense_Mutation	C	G	p.S97*
LUSC	TCGA-66-2785-01	RASSF7	ENST00000414138.2	chr11	561761:561892:562083:562776:563188:563317,	562084	562776	562244	562244	Nonsense_Mutation	C	G	p.S97*
LUSC	TCGA-66-2785-01	INPPL1	ENST00000540329.1	chr11	71940133:71940274:71940508:71940602:71940967:71941063,	71940509	71940602	71940529	71940529	Nonsense_Mutation	C	G	p.S227*
LUSC	TCGA-66-2785-01	LAG3	ENST00000203629.2,ENST00000538079.1	chr12	6884438:6884714:6886429:6886672:6886956:6887087,	6886430	6886672	6886553	6886553	Nonsense_Mutation	C	G	p.S394*
LUSC	TCGA-66-2785-01	ANO6	ENST00000426898.2,ENST00000423947.3,ENST00000435642.1,ENST00000425752.2,ENST00000320560.8,ENST00000441606.2	chr12	45742300:45742414:45744441:45744557:45751072:45751207,	45744442	45744557	45744461	45744461	Nonsense_Mutation	C	G	p.S277*
LUSC	TCGA-66-2785-01	GLI1	ENST00000528432.1,ENST00000228682.2	chr12	57857474:57857574:57857781:57857874:57858455:57858650,	57857782	57857874	57857804	57857804	Nonsense_Mutation	C	A	p.C41*
LUSC	TCGA-66-2785-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122801295:122801402:122803778:122803895:122812493:122812709,	122803779	122803895	122803817	122803817	Nonsense_Mutation	C	A	p.E1110*
LUSC	TCGA-66-2785-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35280147:35280242:35295218:35295362:35331249:35331313,	35295219	35295362	35295249	35295249	Nonsense_Mutation	G	C	p.S169*
LUSC	TCGA-66-2785-01	KLHDC1	ENST00000553274.1,ENST00000555704.1,ENST00000359332.2	chr14	50175876:50175947:50176426:50176544:50176980:50177099,	50176427	50176544	50176427	50176427	Nonsense_Mutation	G	A	p.W56_splice
LUSC	TCGA-66-2785-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56205344	56205344	Nonsense_Mutation	G	C	p.S692*
LUSC	TCGA-66-2786-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47127684:47127804:47129602:47129737:47139444:47139571,	47129603	47129737	47129614	47129614	Nonsense_Mutation	C	A	p.E1823*
LUSC	TCGA-66-2786-01	ARSB	ENST00000565165.1,ENST00000264914.4,ENST00000396151.3	chr5	78135178:78135249:78181406:78181650:78251117:78251325,	78181407	78181650	78181606	78181606	Nonsense_Mutation	G	A	p.R315*
LUSC	TCGA-66-2786-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911963	29911963	Nonsense_Mutation	G	A	p.W228*
LUSC	TCGA-66-2786-01	PIWIL1	ENST00000245255.3	chr12	130839432:130839550:130840097:130840212:130841462:130841650,	130840098	130840212	130840130	130840130	Nonsense_Mutation	G	A	p.W441*
LUSC	TCGA-66-2787-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179631238:179631421:179632482:179632626:179638328:179638539,	179632483	179632626	179632621	179632621	Nonsense_Mutation	C	T	p.Q882*
LUSC	TCGA-66-2787-01	SCN11A	ENST00000450244.1,ENST00000302328.3,ENST00000456224.3,ENST00000444237.2	chr3	38936023:38936455:38938335:38938716:38941384:38941564,	38938336	38938716	38938418	38938418	Nonsense_Mutation	C	T	p.W774*
LUSC	TCGA-66-2787-01	GSTA1	ENST00000334575.5	chr6	52658930:52659064:52660979:52661112:52662383:52662434,	52660980	52661112	52661110	52661110	Nonsense_Mutation	C	A	p.G48*
LUSC	TCGA-66-2787-01	COL1A2	ENST00000464916.1,ENST00000297268.6	chr7	94057604:94057789:94058499:94058742:94059558:94059679,	94058500	94058742	94058503	94058503	Nonsense_Mutation	G	T	p.E1239*
LUSC	TCGA-66-2787-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141721385:141721537:141722067:141722239:141724849:141724949,	141722068	141722239	141722156	141722156	Nonsense_Mutation	G	T	p.G267*
LUSC	TCGA-66-2787-01	RC3H2	ENST00000454740.1,ENST00000357244.2,ENST00000373670.1,ENST00000498479.1	chr9	125613378:125613508:125613601:125613715:125616230:125616365,	125613602	125613715	125613661	125613661	Nonsense_Mutation	C	A	p.E1058*
LUSC	TCGA-66-2787-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27303422:27303640:27306430:27306721:27311486:27311616,	27306431	27306721	27306604	27306604	Nonsense_Mutation	C	A	p.E1445*
LUSC	TCGA-66-2787-01	CCKBR	ENST00000525462.1	chr11	6281155:6281309:6290898:6291150:6291317:6291567,	6290899	6291150	6290904	6290904	Nonsense_Mutation	G	T	p.E53*
LUSC	TCGA-66-2787-01	KIF5A	ENST00000455537.2	chr12	57957402:57957476:57957890:57957995:57958242:57958291,	57957891	57957995	57957891	57957891	Nonsense_Mutation	G	T	p.G98_splice
LUSC	TCGA-66-2787-01	SLC15A4	ENST00000376744.4,ENST00000539703.1	chr12	129294487:129294598:129299319:129299615:129307942:129308067,129293940:129294018:129299319:129299615:129307942:129308067,	129299320	129299615	129299466	129299466	Nonsense_Mutation	G	T	p.C232*
LUSC	TCGA-66-2787-01	PPP1R9B	ENST00000501501.2,ENST00000316878.6	chr17	48216627:48216681:48216793:48216946:48217457:48217593,	48216794	48216946	48216853	48216853	Nonsense_Mutation	C	A	p.E646*
LUSC	TCGA-66-2787-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300743	21300743	Nonsense_Mutation	A	T	p.K425*
LUSC	TCGA-66-2787-01	BCAM	ENST00000590196.1	chr19	45316694:45316877:45317860:45318017:45321778:45321894,	45317861	45318017	45317915	45317915	Nonsense_Mutation	G	T	p.G326*
LUSC	TCGA-66-2788-01	MTOR	ENST00000361445.4	chr1	11303170:11303357:11307681:11307790:11307875:11308151,	11307682	11307790	11307700	11307700	Nonsense_Mutation	G	A	p.R403*
LUSC	TCGA-66-2788-01	PASK	ENST00000358649.4,ENST00000405260.1,ENST00000544142.1,ENST00000403638.3,ENST00000493544.1,ENST00000234040.4,ENST00000539818.1	chr2	242054457:242054592:242054702:242054828:242062146:242062314,	242054703	242054828	242054777	242054777	Nonsense_Mutation	C	A	p.E1042*
LUSC	TCGA-66-2788-01	ANXA6	ENST00000523714.1,ENST00000520054.1,ENST00000521512.1,ENST00000356496.5,ENST00000354546.5	chr5	150503846:150503928:150505962:150506041:150507741:150507800,	150505963	150506041	150505989	150505989	Nonsense_Mutation	C	A	p.E344*
LUSC	TCGA-66-2788-01	CASP1	ENST00000436863.3,ENST00000533400.1,ENST00000532439.1,ENST00000527979.1,ENST00000393136.4,ENST00000598974.1,ENST00000525825.1,ENST00000593315.1,ENST00000526568.1,ENST00000529871.1	chr11	104897568:104897678:104899850:104899994:104900391:104900626,	104899851	104899994	104899950	104899950	Nonsense_Mutation	C	A	p.G303*
LUSC	TCGA-66-2788-01	KLRG1	ENST00000539240.1,ENST00000266551.4,ENST00000356986.3,ENST00000543895.1	chr12	9144801:9144906:9147714:9147884:9161570:9161671,	9147715	9147884	9147764	9147764	Nonsense_Mutation	G	A	p.W79*
LUSC	TCGA-66-2789-01	ATXN7L2	ENST00000369870.3	chr1	110026560:110026702:110028678:110028744:110029127:110029232,	110028679	110028744	110028702	110028702	Nonsense_Mutation	A	T	p.K51*
LUSC	TCGA-66-2789-01	PDCL3	ENST00000264254.6,ENST00000416255.1	chr2	101182964:101183091:101185392:101185483:101186039:101186183,	101185393	101185483	101185428	101185428	Nonsense_Mutation	G	T	p.E57*
LUSC	TCGA-66-2789-01	CLIP2	ENST00000395060.1,ENST00000223398.6,ENST00000361545.5	chr7	73800850:73800927:73803432:73803589:73811403:73811495,73800850:73800934:73803432:73803589:73811403:73811495,	73803433	73803589	73803459	73803459	Nonsense_Mutation	G	T	p.E864*
LUSC	TCGA-66-2789-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62290610	62290610	Nonsense_Mutation	G	C	p.S323*
LUSC	TCGA-66-2791-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229596357:229596516:229599289:229599423:229600370:229600622,	229599290	229599423	229599292	229599292	Nonsense_Mutation	G	A	p.Q895*
LUSC	TCGA-66-2791-01	PEX13	ENST00000295030.5	chr2	61244864:61244986:61258553:61259248:61272860:61272986,	61258554	61259248	61258651	61258651	Nonsense_Mutation	G	T	p.G64*
LUSC	TCGA-66-2791-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540391	187540391	Nonsense_Mutation	G	C	p.S2450*
LUSC	TCGA-66-2791-01	CDK19	ENST00000463016.1	chr6	110948204:110948348:110953232:110953364:110959851:110959909,110948204:110948348:110953232:110953364:110988636:110988777,	110953233	110953364	110953347	110953347	Nonsense_Mutation	T	A	p.R178*
LUSC	TCGA-66-2791-01	NEK9	ENST00000556170.1,ENST00000553945.1	chr14	75587821:75587877:75590748:75590926:75593607:75593743,75587821:75587877:75590748:75590926:75593405:75593636,	75590749	75590926	75590749	75590749	Nonsense_Mutation	C	A	p.G133_splice
LUSC	TCGA-66-2792-01	THAP6	ENST00000311638.3,ENST00000514480.1	chr4	76441981:76442189:76446945:76447071:76465068:76465169,76441981:76442189:76446945:76447071:76452169:76452424,	76446946	76447071	76447060	76447060	Nonsense_Mutation	C	T	p.Q135*
LUSC	TCGA-66-2792-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
LUSC	TCGA-66-2792-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
LUSC	TCGA-66-2792-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62397059:62397156:62397285:62397429:62397668:62397748,	62397286	62397429	62397403	62397403	Nonsense_Mutation	C	T	p.W562*
LUSC	TCGA-66-2792-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
LUSC	TCGA-66-2794-01	RGPD1	ENST00000559485.1,ENST00000409776.2,ENST00000398193.3,ENST00000428128.1	chr2	87211876:87211971:87212698:87214922:87221963:87222103,	87212699	87214922	87214094	87214094	Nonsense_Mutation	A	T	p.R1358*
LUSC	TCGA-66-2794-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1	chr5	37298969:37299080:37299549:37299670:37301538:37301652,	37299550	37299670	37299569	37299569	Nonsense_Mutation	C	T	p.W1221*
LUSC	TCGA-66-2794-01	CIZ1	ENST00000357558.5,ENST00000393608.1,ENST00000372938.5,ENST00000415526.1,ENST00000541172.1,ENST00000277465.4,ENST00000372948.3,ENST00000325721.8,ENST00000372954.1,ENST00000476727.2	chr9	130931354:130931480:130931684:130931798:130932298:130932314,	130931685	130931798	130931780	130931780	Nonsense_Mutation	G	A	p.R740*
LUSC	TCGA-66-2794-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29187450:29187630:29192721:29192818:29195350:29195430,	29192722	29192818	29192760	29192760	Nonsense_Mutation	C	T	p.Q1059*
LUSC	TCGA-66-2794-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29187450:29187630:29192721:29192818:29195350:29195430,	29192722	29192818	29192766	29192766	Nonsense_Mutation	C	T	p.Q1061*
LUSC	TCGA-66-2795-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173803610:173803657:173806077:173806184:173807327:173807397,	173806078	173806184	173806114	173806114	Nonsense_Mutation	G	T	p.G234*
LUSC	TCGA-66-2795-01	MARCH6	ENST00000511802.1,ENST00000507863.1,ENST00000274140.5,ENST00000510872.1	chr5	10378870:10378944:10381911:10382055:10387105:10387178,	10381912	10382055	10382034	10382034	Nonsense_Mutation	G	T	p.G105*
LUSC	TCGA-66-2795-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98643320:98643424:98645306:98645505:98647185:98647332,	98645307	98645505	98645444	98645444	Nonsense_Mutation	C	A	p.E365*
LUSC	TCGA-66-2795-01	MED24	ENST00000580302.1,ENST00000394127.2,ENST00000581054.1	chr17	38209600:38209633:38209721:38209910:38210613:38210628,	38209722	38209910	38209752	38209752	Nonsense_Mutation	C	A	p.G59*
LUSC	TCGA-66-2795-01	MED24	ENST00000537674.2,ENST00000543759.2	chr17	38209600:38209633:38209721:38209932:38210613:38210628,	38209722	38209932	38209752	38209752	Nonsense_Mutation	C	A	p.G59*
LUSC	TCGA-66-2795-01	MED24	ENST00000356271.3,ENST00000394128.2,ENST00000535508.2,ENST00000479829.1	chr17	38209600:38209633:38209721:38209888:38210613:38210628,	38209722	38209888	38209752	38209752	Nonsense_Mutation	C	A	p.G59*
LUSC	TCGA-66-2795-01	MED24	ENST00000578161.1,ENST00000580517.1	chr17	38209600:38209633:38209721:38210021:38210613:38210628,	38209722	38210021	38209752	38209752	Nonsense_Mutation	C	A	p.G59*
LUSC	TCGA-66-2795-01	ATXN7L3	ENST00000586688.1,ENST00000389384.4,ENST00000587097.1,ENST00000593073.1,ENST00000454077.2,ENST00000591295.1	chr17	42271750:42271779:42271884:42272042:42272135:42272207,	42271885	42272042	42272026	42272026	Nonsense_Mutation	C	A	p.E252*
LUSC	TCGA-66-2795-01	FBL	ENST00000601274.1,ENST00000598417.1,ENST00000599134.1,ENST00000597634.1,ENST00000599159.1,ENST00000597224.1,ENST00000221801.3,ENST00000594309.1	chr19	40329791:40329845:40330872:40330967:40331053:40331155,	40330873	40330967	40330880	40330880	Nonsense_Mutation	G	T	p.S124*
LUSC	TCGA-66-2795-01	PARVB	ENST00000338758.7,ENST00000406477.3,ENST00000444029.1,ENST00000404989.1	chr22	44495932:44496003:44514917:44515020:44527366:44527507,	44514918	44515020	44514978	44514978	Nonsense_Mutation	G	T	p.E145*
LUSC	TCGA-66-2800-01	ATP8B2	ENST00000368489.3	chr1	154317446:154317630:154317797:154318021:154318275:154318359,	154317798	154318021	154317830	154317830	Nonsense_Mutation	G	T	p.E868*
LUSC	TCGA-66-2800-01	PDCD10	ENST00000470131.1,ENST00000497056.2,ENST00000462725.2,ENST00000461494.1,ENST00000475915.2,ENST00000392750.2,ENST00000479121.1,ENST00000492139.1,ENST00000473645.2,ENST00000483451.1,ENST00000487947.2,ENST00000464360.1,ENST00000471885.1	chr3	167414827:167414914:167422629:167422683:167437849:167437886,	167422630	167422683	167422680	167422680	Nonsense_Mutation	C	A	p.E34*
LUSC	TCGA-66-2800-01	FAM57A	ENST00000308278.8,ENST00000570699.1	chr17	636364:636421:641085:641287:644540:644570,636364:636421:641085:641287:643744:643826,	641086	641287	641210	641210	Nonsense_Mutation	C	T	p.R111*
LUSC	TCGA-70-6722-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77662456	77662456	Nonsense_Mutation	A	T	p.R1044*
LUSC	TCGA-70-6722-01	ADAM2	ENST00000347580.4,ENST00000265708.4	chr8	39607185:39607263:39613246:39613430:39618694:39618800,	39613247	39613430	39613369	39613369	Nonsense_Mutation	T	A	p.R559*
LUSC	TCGA-70-6722-01	MAPK6	ENST00000261845.5	chr15	52350829:52350994:52353495:52353697:52356098:52358462,	52353496	52353697	52353666	52353666	Nonsense_Mutation	G	T	p.E346*
LUSC	TCGA-70-6723-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2892173	2892173	Nonsense_Mutation	C	A	p.S683*
LUSC	TCGA-85-6175-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42049199	42049199	Nonsense_Mutation	G	A	p.R424*
LUSC	TCGA-85-6175-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3,ENST00000521707.1	chr8	54669114:54669216:54682177:54682303:54684548:54684625,	54682178	54682303	54682288	54682288	Nonsense_Mutation	G	C	p.Y355*
LUSC	TCGA-85-6175-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000584328.1,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29665042:29665157:29665721:29665823:29667522:29667663,	29665722	29665823	29665757	29665757	Nonsense_Mutation	C	A	p.Y2285*
LUSC	TCGA-85-6175-01	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819559	20819559	Nonsense_Mutation	G	T	p.S233*
LUSC	TCGA-85-6560-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109441263:109441387:109441500:109441616:109444411:109444567,	109441501	109441616	109441604	109441604	Nonsense_Mutation	C	A	p.S262*
LUSC	TCGA-85-6560-01	HTRA3	ENST00000382512.3,ENST00000307358.2	chr4	8293096:8293291:8294047:8294080:8295813:8295928,	8294048	8294080	8294050	8294050	Nonsense_Mutation	C	A	p.Y302*
LUSC	TCGA-85-6560-01	MYLK4	ENST00000274643.7	chr6	2679513:2679642:2680454:2680525:2683254:2683396,	2680455	2680525	2680468	2680468	Nonsense_Mutation	C	A	p.G249*
LUSC	TCGA-85-6560-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107300080	107300080	Nonsense_Mutation	G	C	p.S293*
LUSC	TCGA-85-6560-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7640368:7640683:7647676:7647997:7649408:7649729,	7647677	7647997	7647890	7647890	Nonsense_Mutation	C	A	p.G403*
LUSC	TCGA-85-6560-01	SMOC1	ENST00000361956.3,ENST00000381280.4	chr14	70442431:70442531:70444634:70444682:70459133:70459190,	70444635	70444682	70444656	70444656	Nonsense_Mutation	T	A	p.L167*
LUSC	TCGA-85-6560-01	TRAPPC8	ENST00000582513.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29489629:29489723:29493331:29493485:29496234:29496409,	29493332	29493485	29493400	29493400	Nonsense_Mutation	G	A	p.R235*
LUSC	TCGA-85-6560-01	TPD52L2	ENST00000217121.5,ENST00000352482.4,ENST00000346249.4	chr20	62500717:62500794:62505020:62505169:62514071:62514173,62500717:62500794:62505020:62505169:62507168:62507228,	62505021	62505169	62505156	62505156	Nonsense_Mutation	C	T	p.Q101*
LUSC	TCGA-85-6561-01	FUBP1	ENST00000370768.2,ENST00000436586.2	chr1	78414367:78414459:78414839:78414985:78420939:78420967,	78414840	78414985	78414917	78414917	Nonsense_Mutation	C	A	p.E617*
LUSC	TCGA-85-6561-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90048540	90048540	Nonsense_Mutation	G	T	p.E111*
LUSC	TCGA-85-6561-01	REG4	ENST00000354219.1,ENST00000256585.5	chr1	120337035:120337308:120342347:120342485:120345690:120345788,120341119:120341225:120342347:120342485:120345690:120345788,	120342348	120342485	120342482	120342482	Nonsense_Mutation	C	A	p.E57*
LUSC	TCGA-85-6561-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173799797:173799899:173800672:173800768:173802513:173802637,	173800673	173800768	173800688	173800688	Nonsense_Mutation	G	T	p.E138*
LUSC	TCGA-85-6561-01	LAMC2	ENST00000264144.4	chr1	183155422:183155566:183177015:183177204:183184587:183184723,	183177016	183177204	183177132	183177132	Nonsense_Mutation	G	T	p.E66*
LUSC	TCGA-85-6561-01	RGS1	ENST00000367459.3	chr1	192545903:192545965:192547351:192547515:192548266:192549071,	192547352	192547515	192547369	192547369	Nonsense_Mutation	G	T	p.G100*
LUSC	TCGA-85-6561-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212558618:212558767:212560232:212560442:212583766:212583863,	212560233	212560442	212560296	212560296	Nonsense_Mutation	C	A	p.E155*
LUSC	TCGA-85-6561-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226923323	226923323	Nonsense_Mutation	C	A	p.E613*
LUSC	TCGA-85-6561-01	GUK1	ENST00000493138.1	chr1	228333729:228333768:228334542:228334639:228335106:228335146,228333729:228333768:228334542:228334639:228335315:228335358,	228334543	228334639	228334602	228334602	Nonsense_Mutation	G	T	p.E93*
LUSC	TCGA-85-6561-01	GUK1	ENST00000462807.1,ENST00000435153.1,ENST00000492871.1,ENST00000366721.1,ENST00000485838.1,ENST00000464858.1,ENST00000460224.1,ENST00000478725.1,ENST00000472939.1	chr1	228333729:228333768:228334561:228334639:228335106:228335146,	228334562	228334639	228334602	228334602	Nonsense_Mutation	G	T	p.E93*
LUSC	TCGA-85-6561-01	B3GALNT2	ENST00000494378.1,ENST00000478199.2	chr1	235643419:235643465:235647637:235647831:235657990:235658138,	235647638	235647831	235647796	235647796	Nonsense_Mutation	C	A	p.E133*
LUSC	TCGA-85-6561-01	GTDC1	ENST00000344850.4,ENST00000392871.2,ENST00000491448.1,ENST00000542155.1,ENST00000409214.1,ENST00000241391.5,ENST00000392869.2,ENST00000437114.1,ENST00000392867.3,ENST00000409298.1	chr2	144899448:144899622:144903138:144903306:144966169:144966371,	144903139	144903306	144903215	144903215	Nonsense_Mutation	C	A	p.E91*
LUSC	TCGA-85-6561-01	PRKRA	ENST00000470200.1,ENST00000424699.1,ENST00000466165.1,ENST00000438687.3	chr2	179312242:179312313:179314968:179315138:179315692:179315748,	179314969	179315138	179315083	179315083	Nonsense_Mutation	C	A	p.E41*
LUSC	TCGA-85-6561-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197084762:197084877:197085518:197085665:197086934:197087064,	197085519	197085665	197085593	197085593	Nonsense_Mutation	C	A	p.E1407*
LUSC	TCGA-85-6561-01	PLEKHM3	ENST00000427836.2	chr2	208693026:208693220:208725828:208725986:208773237:208773301,	208725829	208725986	208725977	208725977	Nonsense_Mutation	C	A	p.G654*
LUSC	TCGA-85-6561-01	ATG7	ENST00000354449.3,ENST00000424071.1,ENST00000446450.2,ENST00000354956.5	chr3	11383673:11383753:11389350:11389509:11399891:11400084,	11389351	11389509	11389435	11389435	Nonsense_Mutation	G	T	p.E404*
LUSC	TCGA-85-6561-01	TBC1D5	ENST00000429383.4,ENST00000446818.2,ENST00000253692.7,ENST00000429924.2	chr3	17416120:17416171:17418016:17418105:17425404:17425507,	17418017	17418105	17418096	17418096	Nonsense_Mutation	C	A	p.E208*
LUSC	TCGA-85-6561-01	FNDC3B	ENST00000469491.1,ENST00000415807.2,ENST00000416957.1,ENST00000336824.4	chr3	171830241:171830380:171851260:171851336:171944660:171944737,	171851261	171851336	171851309	171851309	Nonsense_Mutation	G	T	p.E54*
LUSC	TCGA-85-6561-01	DCUN1D1	ENST00000492563.1,ENST00000469954.1,ENST00000292782.4	chr3	182665337:182665420:182679013:182679144:182681668:182681837,	182679014	182679144	182679086	182679086	Nonsense_Mutation	C	A	p.E150*
LUSC	TCGA-85-6561-01	DCUN1D1	ENST00000492563.1,ENST00000469954.1,ENST00000292782.4	chr3	182665337:182665420:182679013:182679144:182681668:182681837,	182679014	182679144	182679095	182679095	Nonsense_Mutation	C	A	p.E147*
LUSC	TCGA-85-6561-01	OPA1	ENST00000434811.1,ENST00000497189.1,ENST00000392438.3,ENST00000361828.2	chr3	193343880:193343991:193349400:193349454:193353206:193353311,193336657:193336725:193349400:193349454:193353206:193353311,	193349401	193349454	193349413	193349413	Nonsense_Mutation	G	T	p.E268*
LUSC	TCGA-85-6561-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42551029:42551079:42553214:42553297:42554521:42554627,	42553215	42553297	42553231	42553231	Nonsense_Mutation	G	T	p.S529*
LUSC	TCGA-85-6561-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000512620.1,ENST00000508608.1,ENST00000510156.1,ENST00000508830.1,ENST00000513666.1,ENST00000511782.1,ENST00000341926.3,ENST00000395813.1,ENST00000395812.2,ENST00000511049.1,ENST00000510756.1,ENST00000421689.2	chr5	96075804:96075822:96076448:96076487:96076969:96077062,	96076449	96076487	96076486	96076486	Nonsense_Mutation	C	A	p.S269_splice
LUSC	TCGA-85-6561-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5385192:5385441:5391449:5391725:5396546:5396907,	5391450	5391725	5391687	5391687	Nonsense_Mutation	C	A	p.E1745*
LUSC	TCGA-85-6561-01	TAX1BP1	ENST00000488564.2	chr7	27867419:27867439:27868246:27868402:27880339:27884183,	27868247	27868402	27868362	27868362	Nonsense_Mutation	G	T	p.E762*
LUSC	TCGA-85-6561-01	AMPH	ENST00000428293.2,ENST00000356264.2,ENST00000325590.5	chr7	38500882:38501011:38502574:38502713:38505066:38505149,	38502575	38502713	38502670	38502670	Nonsense_Mutation	C	A	p.E265*
LUSC	TCGA-85-6561-01	NPC1L1	ENST00000289547.4,ENST00000381160.3,ENST00000546276.1	chr7	44555682:44555796:44556301:44556533:44556805:44556912,	44556302	44556533	44556514	44556514	Nonsense_Mutation	C	A	p.E1130*
LUSC	TCGA-85-6561-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289033	6289033	Nonsense_Mutation	G	T	p.G83*
LUSC	TCGA-85-6561-01	PDE7A	ENST00000396642.3,ENST00000379419.4,ENST00000401827.3	chr8	66637011:66637156:66639109:66639201:66639404:66639536,	66639110	66639201	66639131	66639131	Nonsense_Mutation	G	T	p.S300*
LUSC	TCGA-85-6561-01	FZD6	ENST00000540287.1,ENST00000521195.1,ENST00000523933.1,ENST00000522566.1,ENST00000519011.1,ENST00000523739.1,ENST00000358755.4	chr8	104337619:104337726:104340495:104340644:104341882:104342199,	104340496	104340644	104340586	104340586	Nonsense_Mutation	G	T	p.G495*
LUSC	TCGA-85-6561-01	PSAT1	ENST00000376588.3,ENST00000347159.2	chr9	80919650:80919856:80921229:80921402:80923329:80923499,	80921230	80921402	80921340	80921340	Nonsense_Mutation	G	T	p.G170*
LUSC	TCGA-85-6561-01	DHTKD1	ENST00000263035.4	chr10	12154898:12155063:12159671:12159754:12160747:12160917,	12159672	12159754	12159705	12159705	Nonsense_Mutation	G	T	p.G785*
LUSC	TCGA-85-6561-01	API5	ENST00000420461.2,ENST00000378852.3,ENST00000534600.1,ENST00000531273.1,ENST00000455725.2	chr11	43344979:43345186:43348056:43348161:43349338:43349428,	43348057	43348161	43348096	43348096	Nonsense_Mutation	G	T	p.E264*
LUSC	TCGA-85-6561-01	SCAF11	ENST00000465950.1,ENST00000550629.1,ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46316245:46316365:46316718:46316937:46318510:46318571,	46316719	46316937	46316732	46316732	Nonsense_Mutation	G	T	p.S1371*
LUSC	TCGA-85-6561-01	CARS2	ENST00000465145.1,ENST00000257347.4,ENST00000541443.1,ENST00000535398.1,ENST00000539269.1	chr13	111335397:111335481:111340067:111340173:111340293:111340365,	111340068	111340173	111340110	111340110	Nonsense_Mutation	C	A	p.E177*
LUSC	TCGA-85-6561-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75673953:75674046:75676604:75676778:75681992:75682162,	75676605	75676778	75676637	75676637	Nonsense_Mutation	C	A	p.E1055*
LUSC	TCGA-85-6561-01	CIB2	ENST00000559054.1	chr15	78401678:78401724:78403506:78403618:78416046:78416081,78401678:78401724:78403506:78403618:78423506:78423567,78401629:78401724:78403506:78403618:78412909:78413003,	78403507	78403618	78403567	78403567	Nonsense_Mutation	G	T	p.Y46*
LUSC	TCGA-85-6561-01	ARRDC4	ENST00000538249.1,ENST00000268042.6	chr15	98509124:98509272:98511243:98511346:98512352:98512609,	98511244	98511346	98511308	98511308	Nonsense_Mutation	C	A	p.S196*
LUSC	TCGA-85-6561-01	TMEM97	ENST00000583381.1	chr17	26646358:26646391:26652528:26652673:26653559:26653901,	26652529	26652673	26652619	26652619	Nonsense_Mutation	G	T	p.E73*
LUSC	TCGA-85-6561-01	PHF12	ENST00000332830.4,ENST00000589176.1	chr17	27233122:27233535:27233873:27234012:27234607:27234690,	27233874	27234012	27233933	27233933	Nonsense_Mutation	G	T	p.S874*
LUSC	TCGA-85-6561-01	CA10	ENST00000570565.1,ENST00000340813.6,ENST00000451037.2,ENST00000285273.4,ENST00000442502.2,ENST00000575181.1,ENST00000571371.1	chr17	49824992:49825178:50008349:50008492:50149678:50149753,	50008350	50008492	50008415	50008415	Nonsense_Mutation	C	A	p.E78*
LUSC	TCGA-85-6561-01	DHPS	ENST00000598850.1	chr19	12790507:12790533:12790614:12790844:12790974:12791034,	12790615	12790844	12790661	12790661	Nonsense_Mutation	C	A	p.E150*
LUSC	TCGA-85-6561-01	DHPS	ENST00000595100.1,ENST00000593423.1	chr19	12790507:12790533:12790614:12790736:12790974:12791034,12790507:12790533:12790614:12790736:12790963:12791139,	12790615	12790736	12790661	12790661	Nonsense_Mutation	C	A	p.E150*
LUSC	TCGA-85-6561-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300884	18300884	Nonsense_Mutation	C	A	p.E1515*
LUSC	TCGA-85-6561-01	NCF4	ENST00000397147.4,ENST00000248899.6	chr22	37257029:37257245:37260086:37260171:37260960:37261114,	37260087	37260171	37260122	37260122	Nonsense_Mutation	C	A	p.S23*
MESO	TCGA-MQ-A6BR-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
MESO	TCGA-UD-AAC7-01	RANBP10	ENST00000602887.1,ENST00000602677.1,ENST00000602525.1,ENST00000317506.3	chr16	67778190:67778358:67805936:67805989:67839330:67839442,	67805937	67805989	67805986	67805986	Nonsense_Mutation	G	T	p.Y117*
MESO	TCGA-MQ-A6BL-01	SLC25A19	ENST00000416858.2,ENST00000442286.2,ENST00000320362.3,ENST00000580994.1,ENST00000402418.3	chr17	73273433:73273564:73274232:73274416:73279503:73279674,	73274233	73274416	73274302	73274302	Nonsense_Mutation	G	A	p.Q192*
MESO	TCGA-UT-A88D-01	RANBP10	ENST00000602887.1,ENST00000602677.1,ENST00000602525.1,ENST00000317506.3	chr16	67778190:67778358:67805936:67805989:67839330:67839442,	67805937	67805989	67805986	67805986	Nonsense_Mutation	G	T	p.Y117*
MESO	TCGA-UT-A88D-01	DTWD1	ENST00000559164.1	chr15	49913295:49913319:49917309:49917628:49924355:49924374,	49917310	49917628	49917473	49917473	Nonsense_Mutation	C	T	p.Q37*
MESO	TCGA-3H-AB3S-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132154	51132154	Nonsense_Mutation	A	C	p.L93*
MESO	TCGA-LK-A4NW-01	PEX5	ENST00000539304.1,ENST00000412720.2,ENST00000266564.3,ENST00000536883.1,ENST00000434354.2,ENST00000545845.1,ENST00000455147.2,ENST00000545574.1,ENST00000266563.5,ENST00000543974.1,ENST00000396637.3,ENST00000420616.2,ENST00000542539.1	chr12	7344167:7344296:7351606:7351709:7354346:7354391,	7351607	7351709	7351660	7351660	Nonsense_Mutation	G	T	p.E168*
MESO	TCGA-3H-AB3T-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439862	52439862	Nonsense_Mutation	C	A	p.E284*
MESO	TCGA-YS-A95B-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51214709:51214823:51219235:51219451:51221280:51221350,	51219236	51219451	51219329	51219329	Nonsense_Mutation	G	T	p.C1619*
MESO	TCGA-SC-A6LQ-01	RAD51	ENST00000423169.2	chr15	41020908:41021022:41021702:41021832:41023252:41023557,	41021703	41021832	41021818	41021818	Nonsense_Mutation	C	T	p.R254*
MESO	TCGA-ZN-A9VW-01	SKA3	ENST00000314759.5,ENST00000298260.4	chr13	21728835:21729289:21729831:21729950:21732060:21732264,	21729832	21729950	21729936	21729936	Nonsense_Mutation	G	T	p.Y378*
MESO	TCGA-NQ-A638-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000460276.1,ENST00000436828.1,ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16056652:16056709:16062073:16062187:16068292:16068475,	16062074	16062187	16062163	16062163	Nonsense_Mutation	T	A	p.K215*
MESO	TCGA-TS-A8AS-01	CPSF1	ENST00000349769.3	chr8	145621562:145621715:145621812:145621956:145622054:145622144,	145621813	145621956	145621911	145621911	Nonsense_Mutation	T	A	p.K910*
MESO	TCGA-TS-A7P3-01	SPTAN1	ENST00000372739.3,ENST00000372731.4	chr9	131389664:131389777:131390203:131390221:131392599:131392654,	131390204	131390221	131390210	131390210	Nonsense_Mutation	C	A	p.Y2232*
MESO	TCGA-TS-A7OU-01	SLC26A10	ENST00000440686.1,ENST00000320442.4,ENST00000474359.2,ENST00000379218.2	chr12	58016341:58016424:58016569:58016717:58016806:58016920,	58016570	58016717	58016715	58016715	Nonsense_Mutation	C	T	p.Q313*
MESO	TCGA-ZN-A9VO-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30064321:30064435:30067814:30067937:30069257:30069475,	30067815	30067937	30067824	30067824	Nonsense_Mutation	C	T	p.Q337*
MESO	TCGA-UD-AABZ-01	FHL2	ENST00000530340.1,ENST00000393352.3,ENST00000393353.3,ENST00000322142.8,ENST00000344213.4,ENST00000358129.4,ENST00000409807.1,ENST00000452732.1,ENST00000408995.1,ENST00000409177.1	chr2	105979741:105979928:105984026:105984196:106002817:106002997,105979741:105979928:105984026:105984196:105990015:105990190,	105984027	105984196	105984177	105984177	Nonsense_Mutation	G	C	p.Y233*
MESO	TCGA-UD-AABZ-01	IL11RA	ENST00000556792.1,ENST00000478802.2,ENST00000441545.2,ENST00000602473.1,ENST00000378817.4,ENST00000318041.9,ENST00000555981.1,ENST00000555003.1,ENST00000556531.1	chr9	34655214:34655314:34656735:34656905:34657031:34657146,34655601:34655662:34656735:34656905:34657031:34657146,	34656736	34656905	34656750	34656750	Nonsense_Mutation	G	A	p.W59*
MESO	TCGA-XT-AASU-01	SLC3A2	ENST00000377892.1,ENST00000536981.1,ENST00000377891.2,ENST00000377890.2,ENST00000377889.2,ENST00000457660.2,ENST00000535296.1,ENST00000538682.1,ENST00000539891.1,ENST00000338663.7,ENST00000542922.1,ENST00000541425.1	chr11	62652103:62652162:62652648:62652829:62652936:62653059,	62652649	62652829	62652735	62652735	Nonsense_Mutation	C	G	p.S434*
MESO	TCGA-XT-AASU-01	SLC3A2	ENST00000535768.1	chr11	62652103:62652162:62652648:62653080:62655606:62655641,	62652649	62653080	62652735	62652735	Nonsense_Mutation	C	G	p.S434*
MESO	TCGA-XT-AASU-01	RANBP10	ENST00000602887.1,ENST00000602677.1,ENST00000602525.1,ENST00000317506.3	chr16	67778190:67778358:67805936:67805989:67839330:67839442,	67805937	67805989	67805986	67805986	Nonsense_Mutation	G	T	p.Y117*
MESO	TCGA-UT-A88C-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439874	52439874	Nonsense_Mutation	G	A	p.Q280*
MESO	TCGA-MQ-A4LJ-01	C9orf85	ENST00000334731.2,ENST00000377027.1	chr9	74561921:74562028:74586420:74586534:74597572:74598166,74561921:74562028:74586420:74586534:74587607:74587759,	74586421	74586534	74586509	74586509	Nonsense_Mutation	G	T	p.G100*
MESO	TCGA-MQ-A4LJ-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85752565:85752758:85758081:85758243:85762306:85762416,	85758082	85758243	85758111	85758111	Nonsense_Mutation	G	A	p.R183*
MESO	TCGA-3H-AB3X-01	LPAR2	ENST00000407877.3	chr19	19734477:19735378:19737351:19738093:19738900:19738976,	19737352	19738093	19737802	19737802	Nonsense_Mutation	G	A	p.R98*
MESO	TCGA-UT-A97Y-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85497781:85497855:85500299:85500393:85515474:85515654,	85500300	85500393	85500305	85500305	Nonsense_Mutation	A	T	p.K1097*
MESO	TCGA-TS-A7PB-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098850	47098850	Nonsense_Mutation	G	A	p.Q2142*
MESO	TCGA-UD-AAC5-01	RANBP10	ENST00000602887.1,ENST00000602677.1,ENST00000602525.1,ENST00000317506.3	chr16	67778190:67778358:67805936:67805989:67839330:67839442,	67805937	67805989	67805986	67805986	Nonsense_Mutation	G	T	p.Y117*
MESO	TCGA-ZN-A9VV-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098559	47098559	Nonsense_Mutation	G	A	p.Q2239*
MESO	TCGA-ZN-A9VV-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98232094:98232213:98238315:98238441:98239040:98239139,	98238316	98238441	98238318	98238318	Nonsense_Mutation	G	A	p.Q510*
MESO	TCGA-LK-A4NZ-01	XPO6	ENST00000564905.1,ENST00000304658.5,ENST00000565698.1	chr16	28118908:28118998:28123137:28123327:28124224:28124279,	28123138	28123327	28123277	28123277	Nonsense_Mutation	C	T	p.W734*
MESO	TCGA-LK-A4O6-01	LRP2	ENST00000263816.3	chr2	170002256:170002433:170003248:170003469:170007407:170007536,	170003249	170003469	170003333	170003333	Nonsense_Mutation	G	A	p.R4243*
MESO	TCGA-SC-A6LP-01	PPM1F	ENST00000407142.1,ENST00000538191.1,ENST00000397495.4,ENST00000263212.5	chr22	22279941:22280035:22285519:22285663:22287762:22287951,	22285520	22285663	22285585	22285585	Nonsense_Mutation	G	A	p.Q108*
MESO	TCGA-MQ-A4LP-01	NEO1	ENST00000560328.1,ENST00000558964.1	chr15	73564795:73564903:73566151:73566346:73570471:73570540,	73566152	73566346	73566270	73566270	Nonsense_Mutation	C	G	p.Y1028*
MESO	TCGA-3U-A98E-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155408117:155408859:155429587:155429689:155447676:155452240,	155429588	155429689	155429684	155429684	Nonsense_Mutation	G	A	p.Q1664*
MESO	TCGA-LK-A4O7-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437795	52437795	Nonsense_Mutation	G	A	p.Q456*
MESO	TCGA-LK-A4O7-01	WDR35	ENST00000345530.3,ENST00000414212.1	chr2	20160314:20160375:20162055:20162088:20166484:20166670,	20162056	20162088	20162073	20162073	Nonsense_Mutation	C	A	p.E404*
MESO	TCGA-LK-A4O7-01	MAP3K9	ENST00000555993.2,ENST00000554752.2	chr14	71201102:71201215:71202677:71202746:71204961:71205115,	71202678	71202746	71202739	71202739	Nonsense_Mutation	G	A	p.Q618*
MESO	TCGA-3H-AB3K-01	NF2	ENST00000361452.4	chr22	29999987:30000101:30032739:30032865:30035078:30035201,29999987:30000101:30032739:30032865:30038190:30038274,	30032740	30032865	30032794	30032794	Nonsense_Mutation	C	T	p.R57*
MESO	TCGA-TS-A7OZ-01	RPRD2	ENST00000401000.4,ENST00000539519.1,ENST00000492220.1,ENST00000369068.4	chr1	150416726:150416853:150418701:150418877:150429763:150430046,	150418702	150418877	150418731	150418731	Nonsense_Mutation	G	T	p.E216*
MESO	TCGA-TS-A7OZ-01	FCRL3	ENST00000468507.1,ENST00000477837.1,ENST00000473231.1,ENST00000368184.3,ENST00000480682.1,ENST00000492769.1,ENST00000494724.1,ENST00000485028.1,ENST00000368186.5	chr1	157650491:157650560:157650770:157650889:157653006:157653034,	157650771	157650889	157650876	157650876	Nonsense_Mutation	C	A	p.E618*
MESO	TCGA-SH-A9CT-01	ELF5	ENST00000312319.2,ENST00000257832.2	chr11	34511555:34511606:34515025:34515259:34527175:34527300,	34515026	34515259	34515054	34515054	Nonsense_Mutation	G	T	p.Y119*
MESO	TCGA-UD-AAC1-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47635539:47635694:47637232:47637511:47639552:47639699,	47637233	47637511	47637509	47637509	Nonsense_Mutation	C	T	p.Q215*
MESO	TCGA-UD-AAC1-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84774391:84774526:84774615:84774736:84775411:84775541,	84774616	84774736	84774640	84774640	Nonsense_Mutation	C	T	p.R364*
MESO	TCGA-UD-AAC1-01	IQGAP2	ENST00000504477.1,ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3	chr5	75991278:75991491:75993811:75993972:75996900:75997038,	75993812	75993972	75993845	75993845	Nonsense_Mutation	C	T	p.R1414*
MESO	TCGA-UD-AAC1-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923355	150923355	Nonsense_Mutation	C	T	p.R668*
OV	TCGA-04-1331-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
OV	TCGA-04-1357-01	BRCA1	ENST00000352993.3,ENST00000478531.1,ENST00000493795.1,ENST00000309486.4,ENST00000493919.1,ENST00000351666.3,ENST00000484087.1,ENST00000491747.2,ENST00000468300.1,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41222944:41223255:41226347:41226538:41228504:41228628,	41226348	41226538	41226411	41226411	Nonsense_Mutation	G	A	p.Q1538*
OV	TCGA-04-1367-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000514350.1,ENST00000505766.1	chr5	75858220:75858377:75866404:75866482:75871517:75871594,	75866405	75866482	75866444	75866444	Nonsense_Mutation	C	T	p.Q115*
OV	TCGA-09-2044-01	RASAL2	ENST00000448150.3,ENST00000367649.3	chr1	178252698:178252826:178269126:178269253:178359234:178359341,	178269127	178269253	178269208	178269208	Nonsense_Mutation	G	T	p.E138*
OV	TCGA-09-2050-01	MGAT5	ENST00000409645.1	chr2	134877752:134877862:135011832:135012215:135027956:135028121,	135011833	135012215	135012008	135012008	Nonsense_Mutation	C	T	p.Q12*
OV	TCGA-09-2056-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449556	85449556	Nonsense_Mutation	C	T	p.R329*
OV	TCGA-10-0926-01	ABCB1	ENST00000543898.1,ENST00000265724.3	chr7	87168583:87168661:87170672:87170780:87173444:87173591,	87170673	87170780	87170747	87170747	Nonsense_Mutation	G	A	p.R749*
OV	TCGA-13-0883-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813302	214813302	Nonsense_Mutation	C	T	p.Q541*
OV	TCGA-13-0883-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96314940	96314940	Nonsense_Mutation	G	T	p.E40*
OV	TCGA-13-0899-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
OV	TCGA-13-0904-01	TNIP3	ENST00000507879.1,ENST00000057513.3,ENST00000509841.1,ENST00000515605.1,ENST00000511909.1,ENST00000454328.1	chr4	122063880:122063931:122068203:122068329:122071257:122071270,	122068204	122068329	122068296	122068296	Nonsense_Mutation	G	A	p.R292*
OV	TCGA-13-0916-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
OV	TCGA-13-0923-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000559716.2,ENST00000561220.2	chr15	45446148:45446198:45447999:45448127:45453034:45453188,	45448000	45448127	45448043	45448043	Nonsense_Mutation	T	A	p.Y1206*
OV	TCGA-13-1484-01	ARAP3	ENST00000513878.1,ENST00000508305.1,ENST00000239440.4	chr5	141051461:141051547:141051668:141051868:141052118:141052225,	141051669	141051868	141051840	141051840	Nonsense_Mutation	G	A	p.Q472*
OV	TCGA-13-1492-01	MLH1	ENST00000539477.1,ENST00000432299.1,ENST00000456676.2,ENST00000536378.1,ENST00000441265.1,ENST00000485889.1,ENST00000466900.1,ENST00000231790.2,ENST00000455445.2,ENST00000492474.1	chr3	37038114:37038200:37042445:37042544:37045891:37045965,	37042446	37042544	37042536	37042536	Nonsense_Mutation	C	T	p.R100*
OV	TCGA-13-1492-01	MLH1	ENST00000435176.1,ENST00000454028.1,ENST00000429117.1	chr3	37038114:37038200:37042445:37042539:37045891:37045965,	37042446	37042539	37042536	37042536	Nonsense_Mutation	C	T	p.R100*
OV	TCGA-13-1496-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985864	36985864	Nonsense_Mutation	C	A	p.S861*
OV	TCGA-13-1501-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3661421	3661421	Nonsense_Mutation	G	A	p.R80*
OV	TCGA-13-1501-01	ART5	ENST00000397067.3	chr11	3660240:3660265:3661075:3661601:3663035:3663094,	3661076	3661601	3661421	3661421	Nonsense_Mutation	G	A	p.R80*
OV	TCGA-13-1505-01	RSRC2	ENST00000525335.2	chr12	123005931:123005975:123006689:123006876:123011394:123011496,	123006690	123006876	123006786	123006786	Nonsense_Mutation	T	A	p.K23*
OV	TCGA-13-1505-01	RSRC2	ENST00000527399.3,ENST00000532695.1,ENST00000527796.2,ENST00000354654.2,ENST00000433877.2,ENST00000525387.1	chr12	123005931:123005975:123006689:123006846:123011394:123011483,	123006690	123006846	123006786	123006786	Nonsense_Mutation	T	A	p.K23*
OV	TCGA-23-1030-01	VGLL4	ENST00000430365.2	chr3	11606388:11606493:11643306:11643496:11744444:11744521,11606388:11606493:11643306:11643496:11684910:11685398,	11643307	11643496	11643368	11643368	Nonsense_Mutation	C	A	p.E71*
OV	TCGA-23-1030-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042140	134042140	Nonsense_Mutation	C	T	p.R2371*
OV	TCGA-23-1032-01	DEPDC5	ENST00000266091.3,ENST00000400242.3,ENST00000535622.1,ENST00000382105.2,ENST00000456178.1,ENST00000382111.2,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32160960:32161046:32162570:32162654:32164799:32164849,	32162571	32162654	32162610	32162610	Nonsense_Mutation	C	T	p.Q107*
OV	TCGA-23-1110-01	ABCC11	ENST00000353782.5,ENST00000569172.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48227789:48227893:48230142:48230232:48231881:48231978,	48230143	48230232	48230203	48230203	Nonsense_Mutation	C	A	p.E782*
OV	TCGA-23-1122-01	WWC2	ENST00000403733.3,ENST00000427431.1,ENST00000448232.2,ENST00000504005.1,ENST00000513834.1	chr4	184187021:184187104:184190123:184190316:184192232:184192394,	184190124	184190316	184190299	184190299	Nonsense_Mutation	C	T	p.R795*
OV	TCGA-23-2079-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991569	21991569	Nonsense_Mutation	C	A	p.E765*
OV	TCGA-23-2079-01	FAM208A	ENST00000431842.2	chr3	56662519:56662642:56667071:56667871:56672733:56672793,	56667072	56667871	56667184	56667184	Nonsense_Mutation	A	T	p.L1151*
OV	TCGA-23-2079-01	FAM208A	ENST00000493960.2	chr3	56662519:56662642:56667071:56667994:56672733:56672793,	56667072	56667994	56667184	56667184	Nonsense_Mutation	A	T	p.L1151*
OV	TCGA-24-1419-01	SP100	ENST00000264052.5,ENST00000340126.4,ENST00000409112.1	chr2	231367780:231367825:231368900:231369005:231371017:231371160,	231368901	231369005	231368939	231368939	Nonsense_Mutation	C	T	p.Q602*
OV	TCGA-24-1423-01	ACTL6B	ENST00000487125.1,ENST00000160382.5	chr7	100240764:100240949:100243871:100243958:100244173:100244269,	100243872	100243958	100243919	100243919	Nonsense_Mutation	C	A	p.E385*
OV	TCGA-24-1471-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577127	7577127	Nonsense_Mutation	C	A	p.E271*
OV	TCGA-24-1474-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
OV	TCGA-24-1474-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99894075	99894075	Nonsense_Mutation	C	A	p.G525*
OV	TCGA-24-1474-01	SMARCA1	ENST00000478420.1,ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128642031:128642073:128645780:128645960:128649663:128649764,	128645781	128645960	128645834	128645834	Nonsense_Mutation	G	A	p.R253*
OV	TCGA-24-1552-01	STX5	ENST00000491231.1,ENST00000294179.3,ENST00000394690.1,ENST00000377897.4	chr11	62594814:62594870:62595032:62595103:62598490:62598649,	62595033	62595103	62595064	62595064	Nonsense_Mutation	G	A	p.R89*
OV	TCGA-24-2035-01	KRT4	ENST00000458244.2,ENST00000548097.1,ENST00000293774.4,ENST00000551956.1	chr12	53201142:53201177:53201427:53201648:53202077:53202194,	53201428	53201648	53201603	53201603	Nonsense_Mutation	C	A	p.E465*
OV	TCGA-24-2035-01	PTK2	ENST00000519899.1,ENST00000519654.1,ENST00000523746.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000520151.1,ENST00000340930.3,ENST00000521172.1,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000521986.1,ENST00000535192.1	chr8	141762330:141762415:141771263:141771361:141774332:141774359,	141771264	141771361	141771320	141771320	Nonsense_Mutation	G	A	p.R426*
OV	TCGA-24-2260-01	PQLC1	ENST00000397778.2,ENST00000590381.1,ENST00000593030.2	chr18	77703328:77703462:77710723:77711025:77711580:77711603,	77710724	77711025	77710724	77710724	Nonsense_Mutation	C	T	p.W68_splice
OV	TCGA-24-2271-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576885	7576885	Nonsense_Mutation	T	A	p.K321*
OV	TCGA-24-2281-01	POU2F3	ENST00000543440.2,ENST00000260264.4,ENST00000533620.1,ENST00000532638.1	chr11	120178187:120178324:120180133:120180295:120186069:120186136,	120180134	120180295	120180221	120180221	Nonsense_Mutation	C	T	p.R334*
OV	TCGA-24-2289-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
OV	TCGA-24-2290-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098746	47098746	Nonsense_Mutation	A	T	p.Y2243*
OV	TCGA-24-2298-01	ARFGAP2	ENST00000529455.1	chr11	47193862:47193884:47196732:47196864:47197401:47197474,	47196733	47196864	47196804	47196804	Nonsense_Mutation	G	A	p.R109*
OV	TCGA-24-2298-01	ARF5	ENST00000463733.1	chr7	127229136:127229217:127229538:127230191:127231016:127231142,	127229539	127230191	127230153	127230153	Nonsense_Mutation	G	T	p.E98*
OV	TCGA-25-1313-01	RAB36	ENST00000263116.2	chr22	23488791:23488872:23492249:23492341:23494647:23494713,	23492250	23492341	23492252	23492252	Nonsense_Mutation	G	A	p.W90*
OV	TCGA-25-1313-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075775	101075775	Nonsense_Mutation	A	T	p.Y407*
OV	TCGA-25-1321-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626245	82626245	Nonsense_Mutation	G	A	p.R130*
OV	TCGA-25-1326-01	BEST2	ENST00000549706.1,ENST00000553030.1,ENST00000042931.1	chr19	12865690:12865845:12866192:12866270:12866428:12866581,	12866193	12866270	12866268	12866268	Nonsense_Mutation	C	T	p.Q238*
OV	TCGA-25-1326-01	CAPN11	ENST00000533604.1,ENST00000524554.1,ENST00000398776.1	chr6	44144574:44144735:44144978:44145157:44147355:44147367,	44144979	44145157	44145089	44145089	Nonsense_Mutation	C	T	p.Q450*
OV	TCGA-25-1328-01	CEACAM7	ENST00000006724.3,ENST00000401731.1	chr19	42181336:42181431:42187715:42187994:42190789:42191152,	42187716	42187994	42187883	42187883	Nonsense_Mutation	C	T	p.W180*
OV	TCGA-25-2393-01	PRKCQ	ENST00000539722.1,ENST00000263125.5,ENST00000397176.2	chr10	6498635:6498774:6504264:6504327:6506274:6506366,	6504265	6504327	6504278	6504278	Nonsense_Mutation	C	A	p.G532*
OV	TCGA-25-2398-01	INPP5D	ENST00000538935.1,ENST00000359570.5,ENST00000496402.1,ENST00000451407.1	chr2	233986925:233986967:233990454:233990629:233995217:233995358,	233990455	233990629	233990542	233990542	Nonsense_Mutation	C	G	p.S146*
OV	TCGA-25-2398-01	INPP5D	ENST00000474278.1,ENST00000422935.1	chr2	233986925:233986967:233990457:233990629:233995217:233995358,	233990458	233990629	233990542	233990542	Nonsense_Mutation	C	G	p.S146*
OV	TCGA-25-2408-01	TEX26	ENST00000531960.1,ENST00000380473.3	chr13	31531094:31531166:31540358:31540535:31543021:31543183,	31540359	31540535	31540436	31540436	Nonsense_Mutation	C	T	p.R183*
OV	TCGA-29-2427-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41246256	41246256	Nonsense_Mutation	A	C	p.L431*
OV	TCGA-29-2427-01	CACNG6	ENST00000346968.2	chr19	54496131:54496462:54501492:54501567:54515204:54515443,	54501493	54501567	54501503	54501503	Nonsense_Mutation	C	A	p.C114*
OV	TCGA-57-1993-01	IQUB	ENST00000466202.1,ENST00000469057.1,ENST00000324698.6	chr7	123097434:123097620:123101410:123101659:123104886:123105063,	123101411	123101659	123101473	123101473	Nonsense_Mutation	G	A	p.Q649*
OV	TCGA-59-2351-01	MYLK	ENST00000464489.1,ENST00000360304.3,ENST00000359169.1,ENST00000475616.1,ENST00000360772.3	chr3	123444790:123444925:123451742:123451949:123452533:123453069,	123451743	123451949	123451760	123451760	Nonsense_Mutation	C	T	p.W500*
OV	TCGA-59-2352-01	GBP3	ENST00000235878.5,ENST00000370481.4,ENST00000493594.2	chr1	89477510:89477710:89478867:89479110:89479765:89479962,	89478868	89479110	89478949	89478949	Nonsense_Mutation	G	A	p.Q263*
OV	TCGA-59-2354-01	SUPT5H	ENST00000595368.1,ENST00000594729.1,ENST00000402194.2,ENST00000432763.2,ENST00000601978.1,ENST00000601515.1,ENST00000359191.6,ENST00000599117.1,ENST00000598725.1	chr19	39936521:39936605:39943995:39944161:39948314:39948380,	39943996	39944161	39944005	39944005	Nonsense_Mutation	G	T	p.E29*
OV	TCGA-59-2355-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42049463	42049463	Nonsense_Mutation	C	A	p.E336*
OV	TCGA-61-1998-01	CRTC2	ENST00000487235.1,ENST00000368633.1,ENST00000461638.2	chr1	153925280:153925310:153925741:153925845:153926013:153926053,	153925742	153925845	153925751	153925751	Nonsense_Mutation	G	A	p.R200*
OV	TCGA-61-1998-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208842237	208842237	Nonsense_Mutation	C	T	p.W228*
OV	TCGA-61-2002-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204*
OV	TCGA-61-2008-01	ICAM2	ENST00000449662.2,ENST00000578313.1,ENST00000579788.1,ENST00000579687.1,ENST00000412356.1,ENST00000578379.1,ENST00000418105.1,ENST00000583366.1,ENST00000584084.1	chr17	62081229:62081324:62082466:62082733:62083990:62084031,	62082467	62082733	62082581	62082581	Nonsense_Mutation	G	A	p.Q72*
OV	TCGA-61-2009-01	SLCO2B1	ENST00000454962.2,ENST00000428359.2,ENST00000525650.1,ENST00000341411.4,ENST00000530012.1,ENST00000531756.1,ENST00000532236.1,ENST00000289575.5	chr11	74907558:74907724:74911268:74911432:74913945:74914010,	74911269	74911432	74911328	74911328	Nonsense_Mutation	C	A	p.C553*
OV	TCGA-61-2012-01	SLFN13	ENST00000532210.1,ENST00000526861.1,ENST00000530782.1,ENST00000542635.1,ENST00000360502.2,ENST00000533791.1,ENST00000285013.6,ENST00000534689.1	chr17	33769118:33769305:33770807:33770939:33771633:33771720,	33770808	33770939	33770904	33770904	Nonsense_Mutation	G	A	p.Q368*
OV	TCGA-61-2016-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Nonsense_Mutation	C	A	p.E204*
OV	TCGA-61-2092-01	MIF4GD	ENST00000245551.5,ENST00000579297.1,ENST00000577542.1,ENST00000579119.1,ENST00000325102.8,ENST00000580717.1	chr17	73263670:73263711:73263826:73263982:73264163:73264273,	73263827	73263982	73263913	73263913	Nonsense_Mutation	G	A	p.Q129*
OV	TCGA-61-2097-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
OV	TCGA-61-2097-01	GABBR1	ENST00000376977.3,ENST00000377034.4,ENST00000494877.1	chr6	29596863:29597024:29598234:29598420:29599172:29599376,29596863:29596884:29598234:29598420:29599172:29599376,	29598235	29598420	29598265	29598265	Nonsense_Mutation	G	A	p.Q149*
OV	TCGA-13-1481-01	NTNG1	ENST00000370067.1,ENST00000370074.4,ENST00000370070.2,ENST00000370071.2,ENST00000370065.1,ENST00000370068.1,ENST00000294649.4,ENST00000542803.1,ENST00000370061.3,ENST00000370073.2,ENST00000370066.1,ENST00000370072.3	chr1	107691215:107691461:107866903:107867544:107937775:107937948,	107866904	107867544	107867515	107867515	Nonsense_Mutation	C	G	p.Y286*
OV	TCGA-24-1427-01	THEM5	ENST00000368817.5	chr1	151820657:151820768:151823528:151823667:151824733:151824876,	151823529	151823667	151823623	151823623	Nonsense_Mutation	C	A	p.G124*
OV	TCGA-23-1118-01	LAMB3	ENST00000455193.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209789925:209789969:209790754:209790931:209791251:209791393,	209790755	209790931	209790790	209790790	Nonsense_Mutation	C	A	p.E1065*
OV	TCGA-13-1488-01	SNAP47	ENST00000366760.1	chr1	227923136:227923200:227946695:227947186:227954659:227954784,227916407:227916487:227946695:227947186:227954659:227954784,	227946696	227947186	227947172	227947172	Nonsense_Mutation	C	G	p.S370*
OV	TCGA-24-1417-01	MEIG1	ENST00000407572.1	chr10	15001508:15001556:15008438:15008605:15014511:15014680,	15008439	15008605	15008563	15008563	Nonsense_Mutation	T	A	p.Y32*
OV	TCGA-24-1104-01	ERCC6	ENST00000355832.5	chr10	50701162:50701298:50708583:50708742:50713929:50714045,	50708584	50708742	50708699	50708699	Nonsense_Mutation	G	A	p.Q524*
OV	TCGA-13-0807-01	CYP2R1	ENST00000334636.5,ENST00000530609.1	chr11	14900659:14900753:14901681:14902314:14907321:14907387,14900659:14900989:14901681:14902314:14907321:14907387,	14901682	14902314	14902270	14902270	Nonsense_Mutation	G	A	p.R138*
OV	TCGA-24-1562-01	PSMC3	ENST00000298852.3,ENST00000530912.1,ENST00000602866.1	chr11	47440666:47440748:47441814:47441960:47442181:47442278,	47441815	47441960	47441885	47441885	Nonsense_Mutation	C	A	p.E353*
OV	TCGA-13-0760-01	PSMC3	ENST00000531051.2	chr11	47444483:47444524:47445596:47445734:47445979:47446042,47444483:47444524:47445596:47445734:47446157:47446262,	47445597	47445734	47445638	47445638	Nonsense_Mutation	G	A	p.Q184*
OV	TCGA-24-1616-01	GNPTAB	ENST00000299314.7	chr12	102151349:102151435:102153807:102153921:102154904:102155124,	102153808	102153921	102153834	102153834	Nonsense_Mutation	G	A	p.Q1075*
OV	TCGA-13-1497-01	TSPAN9	ENST00000407263.1,ENST00000537971.1,ENST00000011898.5	chr12	3324416:3324521:3387586:3387778:3388157:3388172,3310342:3310422:3387586:3387778:3388157:3388172,	3387587	3387778	3387608	3387608	Nonsense_Mutation	G	T	p.G29*
OV	TCGA-04-1347-01	SLC2A13	ENST00000280871.4	chr12	40158538:40158660:40223904:40224030:40258563:40258684,	40223905	40224030	40223985	40223985	Nonsense_Mutation	G	T	p.Y436*
OV	TCGA-13-0807-01	DHRS7	ENST00000216500.5,ENST00000536410.2,ENST00000557185.1	chr14	60611523:60611731:60616070:60616286:60616782:60616835,	60616071	60616286	60616107	60616107	Nonsense_Mutation	C	T	p.W311*
OV	TCGA-04-1362-01	HERC1	ENST00000443617.2	chr15	63950742:63950917:63951934:63952135:63953171:63953224,	63951935	63952135	63952072	63952072	Nonsense_Mutation	A	C	p.L3096*
OV	TCGA-23-1123-01	AP3B2	ENST00000535359.1,ENST00000261722.3,ENST00000535348.1,ENST00000543938.1	chr15	83330919:83331004:83331445:83331674:83331878:83331985,	83331446	83331674	83331513	83331513	Nonsense_Mutation	G	T	p.S903*
OV	TCGA-09-0369-01	ACBD4	ENST00000321854.8,ENST00000591859.1,ENST00000591136.1,ENST00000586346.1,ENST00000592162.1,ENST00000398322.3,ENST00000431281.1,ENST00000376955.4	chr17	43213567:43213599:43213866:43213987:43214058:43214143,	43213867	43213987	43213977	43213977	Nonsense_Mutation	C	T	p.R67*
OV	TCGA-13-1489-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
OV	TCGA-13-0884-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
OV	TCGA-13-1488-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
OV	TCGA-13-1483-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
OV	TCGA-13-0887-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
OV	TCGA-24-1413-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198*
OV	TCGA-13-1405-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
OV	TCGA-13-0920-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579389	7579389	Nonsense_Mutation	G	A	p.Q100*
OV	TCGA-13-0887-01	RGL3	ENST00000563726.1	chr19	11517499:11517540:11526612:11526824:11527287:11527336,11521928:11522120:11526612:11526824:11527287:11527336,	11526613	11526824	11526798	11526798	Nonsense_Mutation	C	T	p.W151*
OV	TCGA-13-0887-01	RGL3	ENST00000562663.1	chr19	11517499:11517540:11526622:11526824:11527287:11527336,	11526623	11526824	11526798	11526798	Nonsense_Mutation	C	T	p.W151*
OV	TCGA-13-1404-01	JAK3	ENST00000534444.1,ENST00000458235.1,ENST00000527670.1	chr19	17945891:17946024:17946732:17946860:17947937:17948022,	17946733	17946860	17946849	17946849	Nonsense_Mutation	G	A	p.Q600*
OV	TCGA-23-1022-01	B9D2	ENST00000243578.3	chr19	41860591:41860918:41863801:41863927:41869336:41869428,	41863802	41863927	41863906	41863906	Nonsense_Mutation	G	T	p.S37*
OV	TCGA-24-1436-01	LILRB4	ENST00000430952.2	chr19	55178147:55178200:55179088:55179244:55179323:55179844,	55179089	55179244	55179203	55179203	Nonsense_Mutation	A	T	p.K387*
OV	TCGA-24-1436-01	LILRB4	ENST00000391736.1,ENST00000391733.3,ENST00000270452.2	chr19	55178147:55178200:55179085:55179244:55179323:55179844,	55179086	55179244	55179203	55179203	Nonsense_Mutation	A	T	p.K387*
OV	TCGA-13-1488-01	ITGA4	ENST00000397033.2,ENST00000233573.6	chr2	182360097:182360143:182360509:182360664:182363349:182363504,	182360510	182360664	182360592	182360592	Nonsense_Mutation	G	T	p.G490*
OV	TCGA-23-1117-01	AAMP	ENST00000444053.1,ENST00000489767.1,ENST00000465442.1,ENST00000248450.4,ENST00000420660.1	chr2	219130553:219130669:219130786:219130870:219131165:219131310,	219130787	219130870	219130790	219130790	Nonsense_Mutation	T	A	p.K254*
OV	TCGA-23-1022-01	ADCY3	ENST00000450524.1,ENST00000260600.5,ENST00000455323.1	chr2	25050431:25050477:25050770:25051030:25053577:25053694,	25050771	25051030	25051013	25051013	Nonsense_Mutation	G	T	p.Y730*
OV	TCGA-24-1464-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48028254	48028254	Nonsense_Mutation	C	G	p.Y1044*
OV	TCGA-24-1464-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48028254	48028254	Nonsense_Mutation	C	G	p.Y1044*
OV	TCGA-13-1499-01	DSN1	ENST00000373734.4	chr20	35395171:35395244:35396371:35396445:35399275:35399377,35395171:35395244:35396371:35396445:35399827:35399876,	35396372	35396445	35396413	35396413	Nonsense_Mutation	C	A	p.E130*
OV	TCGA-24-1563-01	SYCP2	ENST00000357552.3,ENST00000371001.2,ENST00000412613.1	chr20	58440861:58440920:58441347:58441447:58441549:58441644,	58441348	58441447	58441389	58441389	Nonsense_Mutation	T	A	p.K1427*
OV	TCGA-10-0930-01	SGSM1	ENST00000473458.1,ENST00000400358.4,ENST00000480523.1,ENST00000400359.4	chr22	25240863:25240939:25243600:25243763:25246246:25246399,	25243601	25243763	25243735	25243735	Nonsense_Mutation	C	T	p.Q92*
OV	TCGA-23-1123-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10105475:10105595:10106039:10106113:10106412:10106559,	10106040	10106113	10106040	10106040	Nonsense_Mutation	G	T	p.E650*
OV	TCGA-13-0726-01	ZDHHC23	ENST00000498275.1,ENST00000330212.3,ENST00000478793.1	chr3	113672546:113673257:113675185:113675353:113677209:113677385,	113675186	113675353	113675209	113675209	Nonsense_Mutation	C	G	p.S299*
OV	TCGA-13-0897-01	RPL32	ENST00000396957.1,ENST00000435983.1,ENST00000429711.2,ENST00000396953.2,ENST00000457131.1	chr3	12877600:12877722:12880847:12881029:12881640:12881741,	12880848	12881029	12880849	12880849	Nonsense_Mutation	T	A	p.K93*
OV	TCGA-13-0897-01	RPL32	ENST00000273223.6	chr3	12877600:12877722:12880847:12881083:12881640:12881741,	12880848	12881083	12880849	12880849	Nonsense_Mutation	T	A	p.K93*
OV	TCGA-13-0755-01	MBNL1	ENST00000324210.5,ENST00000282486.6,ENST00000282488.7,ENST00000355460.2	chr3	151986751:151986881:152017193:152018156:152132729:152132897,	152017194	152018156	152018065	152018065	Nonsense_Mutation	C	G	p.S28*
OV	TCGA-13-0887-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180377239:180377368:180377464:180377557:180378357:180378516,	180377465	180377557	180377524	180377524	Nonsense_Mutation	C	A	p.E184*
OV	TCGA-13-1498-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000471363.1,ENST00000490478.1	chr3	55018634:55018697:55021709:55021780:55038789:55038865,	55021710	55021780	55021779	55021779	Nonsense_Mutation	A	T	p.R897*
OV	TCGA-04-1361-01	ACSL1	ENST00000454703.2,ENST00000506733.1,ENST00000437665.3,ENST00000281455.2,ENST00000503407.1,ENST00000513317.1,ENST00000504342.1,ENST00000515030.1,ENST00000507295.1	chr4	185678788:185678860:185678972:185679074:185681510:185681654,	185678973	185679074	185679025	185679025	Nonsense_Mutation	C	T	p.W611*
OV	TCGA-04-1361-01	GNPDA2	ENST00000507917.1	chr4	44712969:44713154:44719129:44719312:44724100:44724259,	44719130	44719312	44719163	44719163	Nonsense_Mutation	T	A	p.K126*
OV	TCGA-13-0920-01	SCD5	ENST00000273908.4	chr4	83601859:83602065:83626435:83626566:83719458:83719909,	83626436	83626566	83626508	83626508	Nonsense_Mutation	C	T	p.W97*
OV	TCGA-13-0726-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128410834:128411137:128505576:128505870:128540066:128540241,	128505577	128505870	128505586	128505586	Nonsense_Mutation	T	T	p.K385*
OV	TCGA-04-1362-01	ENPP3	ENST00000414305.1,ENST00000543135.1,ENST00000357639.3,ENST00000358229.5,ENST00000494023.1	chr6	131992387:131992467:131995301:131995421:131996219:131996329,	131995302	131995421	131995408	131995408	Nonsense_Mutation	G	A	p.W250*
OV	TCGA-04-1362-01	ENPP3	ENST00000427707.1,ENST00000427148.2	chr6	131992387:131992467:131995301:131995550:131996219:131996329,	131995302	131995550	131995408	131995408	Nonsense_Mutation	G	A	p.W250*
OV	TCGA-13-0924-01	MOG	ENST00000376889.3,ENST00000376894.4,ENST00000376902.3,ENST00000416766.2,ENST00000376888.2,ENST00000533330.2,ENST00000485211.1,ENST00000376917.3,ENST00000376898.3	chr6	29635680:29635701:29638057:29638174:29638477:29638498,	29638058	29638174	29638162	29638162	Nonsense_Mutation	C	T	p.R233*
OV	TCGA-24-1417-01	RPP40	ENST00000380051.2,ENST00000464646.1,ENST00000319533.5	chr6	4996455:4996654:4998949:4999075:5000042:5000138,	4998950	4999075	4999008	4999008	Nonsense_Mutation	C	T	p.W167*
OV	TCGA-24-1549-01	DST	ENST00000370754.5,ENST00000361203.3,ENST00000446842.2,ENST00000370788.2,ENST00000421834.2,ENST00000370769.4	chr6	56328362:56328562:56329482:56329554:56330875:56330911,	56329483	56329554	56329537	56329537	Nonsense_Mutation	T	A	p.K7333*
OV	TCGA-13-0887-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91718698:91718843:91722410:91722630:91724336:91724487,	91722411	91722630	91722506	91722506	Nonsense_Mutation	G	T	p.E3152*
OV	TCGA-13-1491-01	DYNC1I1	ENST00000359388.4,ENST00000537881.1	chr7	95439703:95439818:95442558:95442649:95499194:95499310,	95442559	95442649	95442612	95442612	Nonsense_Mutation	G	T	p.G110*
OV	TCGA-13-1491-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442612	95442612	Nonsense_Mutation	G	T	p.G110*
OV	TCGA-13-1481-01	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101232506:101232659:101237400:101237567:101243383:101243512,	101237401	101237567	101237454	101237454	Nonsense_Mutation	C	A	p.S581*
OV	TCGA-13-1507-01	MATN2	ENST00000521689.1,ENST00000518154.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000524308.1	chr8	99033437:99033555:99039643:99040057:99042689:99042842,	99039644	99040057	99039928	99039928	Nonsense_Mutation	G	T	p.E743*
OV	TCGA-13-1481-01	NR6A1	ENST00000416460.2,ENST00000373584.3,ENST00000487099.2,ENST00000344523.4	chr9	127289057:127289179:127298156:127298411:127300370:127300595,	127298157	127298411	127298392	127298392	Nonsense_Mutation	C	A	p.E282*
OV	TCGA-13-0723-01	TDRD7	ENST00000422139.2,ENST00000355295.4	chr9	100235839:100235908:100237664:100237751:100240720:100240855,	100237665	100237751	100237743	100237743	Nonsense_Mutation	C	T	p.R720*
OV	TCGA-24-1563-01	CSF2RA	ENST00000381529.3,ENST00000501036.2,ENST00000381524.3,ENST00000381509.3,ENST00000432318.2	chrX	1414319:1414349:1419383:1419519:1422815:1422912,	1419384	1419519	1419504	1419504	Nonsense_Mutation	G	T	p.E311*
OV	TCGA-10-0930-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32366522:32366645:32380904:32381075:32382698:32382827,	32380905	32381075	32380910	32380910	Nonsense_Mutation	C	A	p.G1774*
OV	TCGA-13-0924-01	PAGE2	ENST00000374968.4	chrX	55116934:55117043:55117764:55117890:55119147:55119275,	55117765	55117890	55117791	55117791	Nonsense_Mutation	G	T	p.E74*
OV	TCGA-13-0897-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387453	70387453	Nonsense_Mutation	C	G	p.Y482*
OV	TCGA-23-1022-01	LIMS1	ENST00000409441.1	chr2	109150911:109151050:109276060:109276220:109287236:109287271,109204766:109204881:109276060:109276220:109287236:109287271,109204921:109205084:109276060:109276220:109287236:109287271,109237728:109237917:109276060:109276220:109287236:109287271,	109276061	109276220	109276124	109276125	Nonsense_Mutation	TG	CT	p.EK21*
OV	TCGA-13-0887-01	PRSS27	ENST00000562249.1,ENST00000565903.1	chr16	2763529:2763699:2764065:2764337:2766500:2766527,	2764066	2764337	2764189	2764190	Nonsense_Mutation	CC	AG	p.EL129*
PAAD	TCGA-HZ-7919-01	TTLL5	ENST00000554510.1,ENST00000298832.9,ENST00000557636.1,ENST00000556893.1	chr14	76286349:76286504:76330009:76330205:76349027:76349245,	76330010	76330205	76330128	76330128	Nonsense_Mutation	C	T	p.Q1149X
PAAD	TCGA-XD-AAUL-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634978	70634978	Nonsense_Mutation	G	T	p.C54X
PAAD	TCGA-US-A77E-01	UNC80	ENST00000439458.1,ENST00000272845.6	chr2	210636762:210636888:210637817:210637866:210640612:210640769,	210637818	210637866	210637852	210637852	Nonsense_Mutation	G	T	p.E43X
PAAD	TCGA-FB-A4P5-01	SEPT9	ENST00000329047.8,ENST00000590294.1	chr17	75303222:75303279:75398140:75398785:75478225:75478417,75369418:75369634:75398140:75398785:75478225:75478417,75277532:75277636:75398140:75398785:75478225:75478417,75316394:75316430:75398140:75398785:75478225:75478417,	75398141	75398785	75398245	75398245	Nonsense_Mutation	C	T	p.Q61X
PAAD	TCGA-IB-7891-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131315	202131315	Nonsense_Mutation	G	T	p.E95X
PAAD	TCGA-IB-7891-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131315	202131315	Nonsense_Mutation	G	T	p.E95X
PAAD	TCGA-YY-A8LH-01	RDX	ENST00000528498.1,ENST00000544551.1,ENST00000530131.1,ENST00000530749.1,ENST00000528900.1,ENST00000343115.4,ENST00000405097.1	chr11	110106823:110106916:110108216:110108377:110118427:110118558,	110108217	110108377	110108333	110108333	Nonsense_Mutation	G	A	p.R379X
PAAD	TCGA-IB-A7M4-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141148	167141148	Nonsense_Mutation	G	A	p.R597X
PAAD	TCGA-IB-A7M4-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141148	167141148	Nonsense_Mutation	G	A	p.R597X
PAAD	TCGA-IB-A7M4-01	LRBA	ENST00000510413.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000515096.1,ENST00000510157.1,ENST00000357115.3	chr4	151186793:151186964:151199004:151199156:151203601:151203795,	151199005	151199156	151199141	151199141	Nonsense_Mutation	G	A	p.R2789X
PAAD	TCGA-2L-AAQL-01	EEF2	ENST00000309311.6	chr19	3979326:3979434:3979805:3980064:3980511:3980707,	3979806	3980064	3980040	3980040	Nonsense_Mutation	G	C	p.Y457X
PAAD	TCGA-2J-AABK-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-2J-AABK-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-IB-7651-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290277	132290277	Nonsense_Mutation	C	T	p.R267X
PAAD	TCGA-IB-7651-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72139064:72139339:72152078:72152348:72165697:72165844,	72152079	72152348	72152161	72152161	Nonsense_Mutation	C	T	p.R1063X
PAAD	TCGA-IB-7651-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8228996	8228996	Nonsense_Mutation	G	A	p.W525X
PAAD	TCGA-IB-7651-01	STRC	ENST00000471703.1,ENST00000448437.2	chr15	43901473:43901532:43902509:43903513:43903696:43903735,	43902510	43903513	43902548	43902548	Nonsense_Mutation	G	A	p.R1154X
PAAD	TCGA-IB-7651-01	STRC	ENST00000440125.1,ENST00000541030.1	chr15	43901473:43901532:43902509:43902584:43903696:43903735,	43902510	43902584	43902548	43902548	Nonsense_Mutation	G	A	p.R1154X
PAAD	TCGA-IB-7651-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377222	77377222	Nonsense_Mutation	C	T	p.W1455X
PAAD	TCGA-IB-7651-01	IL33	ENST00000456383.2	chr9	6215808:6215852:6241683:6241785:6250473:6250599,	6241684	6241785	6241745	6241745	Nonsense_Mutation	G	A	p.W17X
PAAD	TCGA-IB-7651-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1,ENST00000523765.1	chr6	112476052:112476149:112476766:112476908:112479933:112480082,	112476767	112476908	112476778	112476778	Nonsense_Mutation	G	A	p.R650X
PAAD	TCGA-IB-7651-01	FGD4	ENST00000534526.2,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000493087.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32777909:32778002:32778587:32778713:32786482:32786623,	32778588	32778713	32778624	32778624	Nonsense_Mutation	C	T	p.R558X
PAAD	TCGA-IB-7651-01	PCK2	ENST00000396973.4,ENST00000216780.4	chr14	24563974:24564054:24566100:24566346:24567411:24567437,24563565:24563643:24566100:24566346:24567411:24567437,	24566101	24566346	24566204	24566204	Nonsense_Mutation	C	T	p.R45X
PAAD	TCGA-IB-7651-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145155993	145155993	Nonsense_Mutation	G	A	p.R921X
PAAD	TCGA-IB-7651-01	THG1L	ENST00000231198.7	chr5	157159875:157160052:157161583:157161753:157162853:157162942,	157161584	157161753	157161741	157161741	Nonsense_Mutation	C	T	p.R176X
PAAD	TCGA-IB-7651-01	THG1L	ENST00000521655.1	chr5	157159875:157160052:157161678:157161753:157162853:157162942,	157161679	157161753	157161741	157161741	Nonsense_Mutation	C	T	p.R176X
PAAD	TCGA-IB-7651-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911640	74911640	Nonsense_Mutation	C	T	p.R183X
PAAD	TCGA-IB-7651-01	ECM2	ENST00000344604.5	chr9	95274292:95274408:95276912:95277485:95279968:95280157,	95276913	95277485	95277420	95277420	Nonsense_Mutation	C	A	p.E183X
PAAD	TCGA-IB-7651-01	SLC17A2	ENST00000360488.3	chr6	25914807:25914898:25915963:25916096:25916912:25917074,	25915964	25916096	25915985	25915985	Nonsense_Mutation	G	A	p.R348X
PAAD	TCGA-IB-7651-01	MS4A1	ENST00000527101.1,ENST00000533306.1	chr11	60229657:60229771:60229890:60230006:60230474:60230594,	60229891	60230006	60229917	60229917	Nonsense_Mutation	C	T	p.Q24X
PAAD	TCGA-IB-7651-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414156	1414156	Nonsense_Mutation	G	T	p.G556X
PAAD	TCGA-IB-7651-01	FAM160A2	ENST00000265978.4	chr11	6239034:6239380:6239787:6239993:6240200:6240280,	6239788	6239993	6239851	6239851	Nonsense_Mutation	C	A	p.E472X
PAAD	TCGA-IB-7651-01	FAM160A2	ENST00000524416.1,ENST00000449352.2	chr11	6239034:6239380:6239829:6239993:6240200:6240280,	6239830	6239993	6239851	6239851	Nonsense_Mutation	C	A	p.E472X
PAAD	TCGA-IB-7651-01	CBFA2T2	ENST00000397798.2,ENST00000492345.1,ENST00000346541.3,ENST00000344201.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32194761:32194905:32198899:32199141:32207322:32207412,	32198900	32199141	32199034	32199034	Nonsense_Mutation	C	T	p.R114X
PAAD	TCGA-IB-7651-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516521	195516521	Nonsense_Mutation	G	A	p.Q644X
PAAD	TCGA-IB-7651-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268566	1268566	Nonsense_Mutation	G	T	p.E3486X
PAAD	TCGA-IB-7651-01	ZFP28	ENST00000301318.3	chr19	57061435:57061550:57061878:57061974:57065052:57068169,	57061879	57061974	57061959	57061959	Nonsense_Mutation	G	T	p.G295X
PAAD	TCGA-IB-7651-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000342579.3,ENST00000321892.4,ENST00000578307.1	chr17	65962687:65962772:65971887:65972074:65977551:65977878,65962687:65962772:65971887:65972074:65978367:65978404,	65971888	65972074	65971920	65971920	Nonsense_Mutation	C	T	p.R2858X
PAAD	TCGA-IB-7651-01	PARP12	ENST00000473341.1,ENST00000263549.3,ENST00000496624.1,ENST00000488726.1	chr7	139726003:139726148:139727075:139727206:139728412:139728488,	139727076	139727206	139727113	139727113	Nonsense_Mutation	G	A	p.R531X
PAAD	TCGA-IB-7651-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560065	32560065	Nonsense_Mutation	G	T	p.G64X
PAAD	TCGA-IB-7651-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000341723.4	chr7	92826797:92826923:92837892:92838189:92844713:92844998,	92837893	92838189	92838007	92838007	Nonsense_Mutation	C	A	p.E300X
PAAD	TCGA-IB-7651-01	LAMP1	ENST00000397181.3,ENST00000332556.4	chr13	113975718:113975785:113975871:113976042:113976596:113976909,	113975872	113976042	113975904	113975904	Nonsense_Mutation	C	T	p.R326X
PAAD	TCGA-IB-7651-01	GNAQ	ENST00000286548.4,ENST00000397476.3	chr9	80409378:80409508:80412435:80412564:80430531:80430686,	80412436	80412564	80412494	80412494	Nonsense_Mutation	G	A	p.R183X
PAAD	TCGA-IB-7651-01	STMN1	ENST00000446334.1,ENST00000357865.2,ENST00000399728.1,ENST00000455785.2,ENST00000374291.1,ENST00000426559.2	chr1	26228102:26228173:26230131:26230304:26231154:26231229,	26230132	26230304	26230290	26230290	Nonsense_Mutation	C	A	p.E10X
PAAD	TCGA-IB-7651-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43692241:43692419:43693913:43694048:43695880:43695997,	43693914	43694048	43693986	43693986	Nonsense_Mutation	C	T	p.R557X
PAAD	TCGA-IB-7651-01	PCK2	ENST00000560106.1,ENST00000559250.1,ENST00000560736.1,ENST00000559837.1,ENST00000561050.1,ENST00000396973.4,ENST00000545054.2,ENST00000558096.1,ENST00000216780.4	chr14	24566100:24566346:24567411:24567596:24567683:24567800,	24567412	24567596	24567497	24567497	Nonsense_Mutation	C	T	p.Q121X
PAAD	TCGA-IB-7651-01	RUFY3	ENST00000417478.2,ENST00000536664.1,ENST00000381006.3,ENST00000502653.1,ENST00000226328.4	chr4	71644085:71644155:71648807:71648900:71650512:71650596,	71648808	71648900	71648856	71648856	Nonsense_Mutation	C	T	p.R375X
PAAD	TCGA-IB-7651-01	STRC	ENST00000440125.1,ENST00000450892.2,ENST00000541030.1,ENST00000455136.1	chr15	43896901:43897044:43897461:43897597:43900060:43900173,	43897462	43897597	43897593	43897593	Nonsense_Mutation	G	A	p.Q1267X
PAAD	TCGA-IB-7651-01	DCBLD2	ENST00000326840.6,ENST00000326857.9	chr3	98539091:98539132:98541071:98541205:98541512:98541585,	98541072	98541205	98541110	98541110	Nonsense_Mutation	A	C	p.Y264X
PAAD	TCGA-IB-7651-01	DHPS	ENST00000210060.7,ENST00000594424.1,ENST00000595844.1,ENST00000351660.5,ENST00000595912.1,ENST00000596162.1,ENST00000601639.1,ENST00000597152.1,ENST00000598850.1,ENST00000601537.1	chr19	12788141:12788210:12790270:12790357:12790436:12790533,	12790271	12790357	12790297	12790297	Nonsense_Mutation	C	A	p.E218X
PAAD	TCGA-IB-7651-01	CHPF2	ENST00000495645.1	chr7	150929574:150929900:150931171:150931360:150932133:150932234,	150931172	150931360	150931242	150931242	Nonsense_Mutation	C	T	p.R49X
PAAD	TCGA-IB-7651-01	STEAP2	ENST00000394626.1,ENST00000394629.2	chr7	89859185:89859350:89861650:89861798:89866204:89866922,	89861651	89861798	89861714	89861714	Nonsense_Mutation	C	T	p.R417X
PAAD	TCGA-IB-7651-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79402957:79403118:79403541:79403689:79410028:79410234,	79403542	79403689	79403572	79403572	Nonsense_Mutation	C	T	p.Q2879X
PAAD	TCGA-IB-7651-01	CDC42BPG	ENST00000342711.5	chr11	64597665:64597728:64598976:64599193:64599899:64599954,	64598977	64599193	64599088	64599088	Nonsense_Mutation	G	A	p.Q1065X
PAAD	TCGA-IB-7651-01	POLL	ENST00000456836.2	chr10	103343358:103343438:103347002:103347163:103347960:103347976,103345618:103345913:103347002:103347163:103347641:103347966,103344634:103344676:103347002:103347163:103347960:103347976,	103347003	103347163	103347012	103347012	Nonsense_Mutation	C	A	p.E36X
PAAD	TCGA-IB-7651-01	POLL	ENST00000413344.1	chr10	103345622:103345913:103347002:103347139:103347960:103347976,	103347003	103347139	103347012	103347012	Nonsense_Mutation	C	A	p.E36X
PAAD	TCGA-IB-7651-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21859105:21859222:21859621:21859801:21859991:21860105,	21859622	21859801	21859667	21859667	Nonsense_Mutation	C	T	p.W2340X
PAAD	TCGA-IB-7651-01	PLXDC2	ENST00000377238.2,ENST00000377242.3,ENST00000377252.4	chr10	20357098:20357168:20432223:20432346:20436712:20436831,	20432224	20432346	20432253	20432253	Nonsense_Mutation	C	T	p.R191X
PAAD	TCGA-IB-7651-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53680262	53680262	Nonsense_Mutation	C	T	p.Q1248X
PAAD	TCGA-IB-7651-01	MSH3	ENST00000265081.6	chr5	80063751:80063939:80064653:80064822:80071512:80071577,	80064654	80064822	80064769	80064769	Nonsense_Mutation	C	T	p.R734X
PAAD	TCGA-IB-7651-01	SEC31A	ENST00000513858.1,ENST00000348405.4,ENST00000500777.2,ENST00000326950.5,ENST00000512664.1,ENST00000505984.1,ENST00000264405.5	chr4	83778841:83778917:83784470:83784545:83785514:83785608,	83784471	83784545	83784500	83784500	Nonsense_Mutation	C	A	p.G494X
PAAD	TCGA-IB-7651-01	VPS36	ENST00000378060.4	chr13	53001321:53001354:53007796:53007883:53008927:53009017,	53007797	53007883	53007820	53007820	Nonsense_Mutation	C	A	p.E169X
PAAD	TCGA-IB-7651-01	MCCC2	ENST00000512218.2	chr5	70936829:70936910:70939597:70939722:70942037:70942104,	70939598	70939722	70939654	70939654	Nonsense_Mutation	C	T	p.R361X
PAAD	TCGA-IB-7651-01	ZNF609	ENST00000326648.3	chr15	64915025:64915251:64962544:64962632:64966114:64966970,	64962545	64962632	64962610	64962610	Nonsense_Mutation	C	T	p.R347X
PAAD	TCGA-IB-7651-01	CD1B	ENST00000368168.3	chr1	158299324:158299438:158299641:158299920:158300585:158300815,	158299642	158299920	158299849	158299849	Nonsense_Mutation	C	A	p.G134X
PAAD	TCGA-IB-7651-01	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000498422.1,ENST00000469153.1	chr3	63821976:63822034:63823651:63823738:63824047:63824175,	63823652	63823738	63823667	63823667	Nonsense_Mutation	G	A	p.R113X
PAAD	TCGA-IB-7651-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000583809.1,ENST00000581231.1,ENST00000583054.1,ENST00000317931.7	chr18	6244565:6244587:6263945:6264037:6301901:6301956,	6263946	6264037	6263998	6263998	Nonsense_Mutation	C	T	p.W56X
PAAD	TCGA-IB-7651-01	TANC1	ENST00000470074.1,ENST00000263635.6,ENST00000454300.1	chr2	160082198:160082290:160084329:160084476:160085306:160085407,	160084330	160084476	160084456	160084456	Nonsense_Mutation	C	T	p.R1344X
PAAD	TCGA-IB-7651-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000414834.2,ENST00000546649.1,ENST00000546757.1,ENST00000358214.5,ENST00000547312.1,ENST00000553031.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1	chr12	32893342:32893452:32895522:32895682:32896287:32896515,	32895523	32895682	32895632	32895632	Nonsense_Mutation	G	T	p.E702X
PAAD	TCGA-IB-7651-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057668	145057668	Nonsense_Mutation	C	A	p.E697X
PAAD	TCGA-IB-7651-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057668	145057668	Nonsense_Mutation	C	A	p.E697X
PAAD	TCGA-IB-7651-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383227	109383227	Nonsense_Mutation	G	T	p.E2078X
PAAD	TCGA-IB-7651-01	MTCH2	ENST00000534074.1,ENST00000542981.1,ENST00000302503.3,ENST00000525649.1	chr11	47640390:47640471:47644252:47644328:47647225:47647292,	47644253	47644328	47644304	47644304	Nonsense_Mutation	G	T	p.Y258X
PAAD	TCGA-IB-7651-01	EFCAB7	ENST00000461039.1,ENST00000460678.2,ENST00000371088.4	chr1	64022784:64022918:64027379:64027528:64033980:64034190,	64027380	64027528	64027454	64027454	Nonsense_Mutation	C	T	p.R475X
PAAD	TCGA-IB-7651-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000324330.9,ENST00000245441.5,ENST00000453401.2,ENST00000382043.4	chr14	51238049:51238186:51239018:51239186:51239666:51239716,	51239019	51239186	51239168	51239168	Nonsense_Mutation	G	A	p.R278X
PAAD	TCGA-IB-7651-01	PTDSS1	ENST00000517557.1,ENST00000517309.1	chr8	97285526:97285618:97296336:97296381:97299249:97299374,	97296337	97296381	97296348	97296348	Nonsense_Mutation	C	T	p.R95X
PAAD	TCGA-IB-7651-01	TRA2A	ENST00000474586.1,ENST00000490942.1,ENST00000538367.1,ENST00000494255.1,ENST00000297071.4,ENST00000392502.4	chr7	23552643:23552701:23555981:23556147:23561325:23561459,	23555982	23556147	23556038	23556038	Nonsense_Mutation	G	A	p.R94X
PAAD	TCGA-IB-7651-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832433	24832433	Nonsense_Mutation	C	T	p.Q1412X
PAAD	TCGA-IB-7651-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926559	1926559	Nonsense_Mutation	C	A	p.E328X
PAAD	TCGA-IB-7651-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926559	1926559	Nonsense_Mutation	C	A	p.E328X
PAAD	TCGA-IB-7651-01	SPATA13	ENST00000382108.3,ENST00000424834.2,ENST00000343003.6,ENST00000399949.2,ENST00000382095.4	chr13	24860351:24860531:24860902:24861088:24863136:24863316,	24860903	24861088	24860906	24860906	Nonsense_Mutation	C	T	p.R829X
PAAD	TCGA-IB-7651-01	CERS4	ENST00000595722.1,ENST00000559450.1,ENST00000558331.1,ENST00000251363.5,ENST00000558501.1,ENST00000557925.1,ENST00000559336.1	chr19	8321119:8321170:8321501:8321594:8321832:8321961,	8321502	8321594	8321538	8321538	Nonsense_Mutation	G	T	p.E186X
PAAD	TCGA-IB-7651-01	RARS2	ENST00000369536.5	chr6	88228541:88228609:88229300:88229425:88229897:88229970,	88229301	88229425	88229394	88229394	Nonsense_Mutation	C	A	p.G382X
PAAD	TCGA-IB-7651-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6843145:6843177:6848008:6848125:6850680:6850768,	6848009	6848125	6848025	6848025	Nonsense_Mutation	G	T	p.E677X
PAAD	TCGA-IB-7651-01	EFCAB5	ENST00000378738.3,ENST00000440741.3	chr17	28384693:28384908:28386562:28386719:28400100:28400144,	28386563	28386719	28386587	28386587	Nonsense_Mutation	C	T	p.R869X
PAAD	TCGA-IB-7651-01	NOL4	ENST00000538587.1,ENST00000261592.5,ENST00000535384.1	chr18	31523028:31523142:31537289:31537481:31538202:31538382,	31537290	31537481	31537445	31537445	Nonsense_Mutation	G	A	p.R425X
PAAD	TCGA-IB-7651-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476155	32476155	Nonsense_Mutation	C	A	p.E260X
PAAD	TCGA-IB-7651-01	OSBPL1A	ENST00000319481.3,ENST00000399443.3,ENST00000357041.4	chr18	21752339:21752447:21757976:21758159:21759701:21759799,	21757977	21758159	21758017	21758017	Nonsense_Mutation	C	A	p.E685X
PAAD	TCGA-IB-7651-01	PHC1	ENST00000433847.2,ENST00000536844.1,ENST00000540574.1,ENST00000543824.1,ENST00000433083.2,ENST00000544916.1	chr12	9075339:9075384:9083030:9083523:9085158:9085409,	9083031	9083523	9083073	9083073	Nonsense_Mutation	G	T	p.G219X
PAAD	TCGA-IB-7651-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000426233.1,ENST00000540518.1,ENST00000236959.9	chr2	216209501:216209594:216211481:216211664:216213816:216213972,	216211482	216211664	216211553	216211553	Nonsense_Mutation	T	G	p.Y464X
PAAD	TCGA-IB-7651-01	SHROOM1	ENST00000378679.3,ENST00000319854.3	chr5	132159972:132160111:132160306:132160513:132160709:132160765,	132160307	132160513	132160428	132160428	Nonsense_Mutation	C	A	p.E374X
PAAD	TCGA-IB-7651-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475213	32475213	Nonsense_Mutation	C	A	p.E574X
PAAD	TCGA-IB-7651-01	C1QA	ENST00000438241.1	chr1	22963254:22963353:22964102:22964272:22965325:22965654,	22964103	22964272	22964203	22964203	Nonsense_Mutation	A	T	p.K32X
PAAD	TCGA-IB-7651-01	PTPN4	ENST00000431283.1,ENST00000263708.2,ENST00000544261.1,ENST00000430976.1	chr2	120690051:120690125:120692375:120692534:120702656:120702816,	120692376	120692534	120692377	120692377	Nonsense_Mutation	C	T	p.R400X
PAAD	TCGA-IB-7651-01	FRYL	ENST00000512810.1,ENST00000264319.7,ENST00000503339.1,ENST00000507873.2	chr4	48502046:48502237:48503639:48503750:48507563:48507632,	48503640	48503750	48503735	48503735	Nonsense_Mutation	G	A	p.R2833X
PAAD	TCGA-IB-7651-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000413211.1,ENST00000360817.5,ENST00000403949.1,ENST00000423384.1,ENST00000443875.1	chr12	7169142:7169221:7169778:7169986:7170193:7170282,	7169779	7169986	7169900	7169900	Nonsense_Mutation	G	T	p.E43X
PAAD	TCGA-IB-7651-01	LYPLAL1	ENST00000463964.1	chr1	219352488:219352588:219366423:219366593:219383873:219383989,219352741:219352768:219366423:219366593:219383873:219383989,	219366424	219366593	219366593	219366593	Nonsense_Mutation	G	T	p.G121X
PAAD	TCGA-IB-7651-01	LYPLAL1	ENST00000366927.3	chr1	219352488:219352588:219366471:219366593:219383873:219383989,	219366472	219366593	219366593	219366593	Nonsense_Mutation	G	T	p.G121X
PAAD	TCGA-IB-7651-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50725539:50725693:50726095:50726222:50726365:50726466,	50726096	50726222	50726164	50726164	Nonsense_Mutation	G	A	p.R514X
PAAD	TCGA-IB-7651-01	RFX5	ENST00000290524.4,ENST00000368870.2,ENST00000452513.2,ENST00000392746.3,ENST00000452671.2,ENST00000436637.1	chr1	151315817:151315918:151316156:151316358:151316672:151316754,	151316157	151316358	151316355	151316355	Nonsense_Mutation	C	A	p.E187X
PAAD	TCGA-IB-7651-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149248116	149248116	Nonsense_Mutation	G	T	p.E1406X
PAAD	TCGA-IB-7651-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47537787:47537850:47538527:47538590:47538943:47539033,	47538528	47538590	47538546	47538546	Nonsense_Mutation	G	T	p.G379X
PAAD	TCGA-IB-7651-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217586	26217586	Nonsense_Mutation	C	T	p.R87X
PAAD	TCGA-IB-7651-01	NAP1L1	ENST00000393263.3,ENST00000552147.1,ENST00000552013.1	chr12	76441413:76441498:76442172:76442244:76442979:76443030,	76442173	76442244	76442238	76442238	Nonsense_Mutation	G	A	p.Q383X
PAAD	TCGA-IB-7651-01	NAP1L1	ENST00000552056.1	chr12	76441413:76441498:76442200:76442244:76442979:76443030,	76442201	76442244	76442238	76442238	Nonsense_Mutation	G	A	p.Q383X
PAAD	TCGA-IB-7651-01	ZMPSTE24	ENST00000372759.3	chr1	40737565:40737707:40747014:40747199:40751596:40751701,	40747015	40747199	40747106	40747106	Nonsense_Mutation	C	A	p.Y287X
PAAD	TCGA-IB-7651-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133827072	133827072	Nonsense_Mutation	T	G	p.L374X
PAAD	TCGA-IB-7651-01	LYVE1	ENST00000531706.1,ENST00000256178.3,ENST00000438354.2	chr11	10581362:10581441:10582041:10582347:10585486:10585626,	10582042	10582347	10582264	10582264	Nonsense_Mutation	C	A	p.E161X
PAAD	TCGA-IB-7651-01	WFDC1	ENST00000568638.1,ENST00000219454.5,ENST00000567056.1	chr16	84353039:84353177:84358024:84358066:84360487:84360561,	84358025	84358066	84358039	84358039	Nonsense_Mutation	C	T	p.R193X
PAAD	TCGA-IB-7651-01	MYO1B	ENST00000339514.4,ENST00000304164.4,ENST00000392318.3,ENST00000392316.1	chr2	192228883:192229002:192234267:192234354:192234952:192235018,	192234268	192234354	192234334	192234334	Nonsense_Mutation	C	T	p.R367X
PAAD	TCGA-IB-7651-01	ADAP2	ENST00000580526.1	chr17	29248934:29249126:29249957:29250088:29258906:29258986,	29249958	29250088	29250056	29250056	Nonsense_Mutation	C	T	p.R65X
PAAD	TCGA-IB-7651-01	ING5	ENST00000492488.1,ENST00000482774.1,ENST00000406941.1,ENST00000313552.6,ENST00000489509.1	chr2	242648630:242648797:242650791:242650903:242651392:242651486,	242650792	242650903	242650891	242650891	Nonsense_Mutation	C	T	p.R126X
PAAD	TCGA-IB-7651-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197074013	197074013	Nonsense_Mutation	C	T	p.W1456X
PAAD	TCGA-IB-7651-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214815450	214815450	Nonsense_Mutation	G	T	p.E1257X
PAAD	TCGA-IB-7651-01	ZYX	ENST00000449423.2,ENST00000354434.4	chr7	143078667:143078872:143079340:143079540:143079685:143079769,143078667:143078872:143079340:143079540:143079893:143080018,	143079341	143079540	143079460	143079460	Nonsense_Mutation	G	T	p.E110X
PAAD	TCGA-IB-7651-01	ZYX	ENST00000468083.1	chr7	143078667:143078872:143079340:143079778:143079893:143080018,	143079341	143079778	143079460	143079460	Nonsense_Mutation	G	T	p.E110X
PAAD	TCGA-IB-7651-01	PPP2R5C	ENST00000556218.1	chr14	102360843:102360897:102368055:102368226:102372738:102372866,102360843:102360897:102368055:102368226:102375925:102376027,	102368056	102368226	102368104	102368104	Nonsense_Mutation	G	T	p.E356X
PAAD	TCGA-IB-7651-01	OGDH	ENST00000222673.5,ENST00000419661.1,ENST00000443864.2	chr7	44684925:44685117:44687255:44687358:44706334:44706450,	44687256	44687358	44687259	44687259	Nonsense_Mutation	C	T	p.R140X
PAAD	TCGA-IB-7651-01	WDSUB1	ENST00000358147.4	chr2	160104882:160105023:160112706:160112886:160132056:160132149,	160112707	160112886	160112844	160112844	Nonsense_Mutation	C	T	p.W332X
PAAD	TCGA-IB-7651-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699003	17699003	Nonsense_Mutation	G	A	p.W914X
PAAD	TCGA-IB-7651-01	DAW1	ENST00000309931.2,ENST00000545118.1,ENST00000454999.1,ENST00000373666.2	chr2	228755970:228756029:228758510:228758633:228762897:228762997,	228758511	228758633	228758521	228758521	Nonsense_Mutation	G	T	p.G110X
PAAD	TCGA-IB-7651-01	DYNC1LI1	ENST00000432458.2,ENST00000273130.4,ENST00000472985.1	chr3	32571952:32572012:32574477:32574589:32576002:32576138,	32574478	32574589	32574558	32574558	Nonsense_Mutation	C	A	p.G334X
PAAD	TCGA-IB-7651-01	NMT2	ENST00000540259.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15154794:15154962:15161341:15161512:15170348:15170457,	15161342	15161512	15161458	15161458	Nonsense_Mutation	G	A	p.R352X
PAAD	TCGA-IB-7651-01	CACHD1	ENST00000495994.1,ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65124387:65124556:65129377:65129520:65130180:65130362,	65129378	65129520	65129424	65129424	Nonsense_Mutation	T	G	p.Y615X
PAAD	TCGA-IB-7651-01	SULT1A2	ENST00000526384.1,ENST00000534108.1,ENST00000395630.1,ENST00000335715.4	chr16	28604590:28604667:28604762:28604889:28606687:28606785,	28604763	28604889	28604766	28604766	Nonsense_Mutation	C	A	p.E166X
PAAD	TCGA-IB-7651-01	OAT	ENST00000368845.5	chr10	126097461:126097534:126100541:126100769:126107441:126107505,	126100542	126100769	126100554	126100554	Nonsense_Mutation	C	A	p.E63X
PAAD	TCGA-IB-7651-01	HMGCR	ENST00000511206.1,ENST00000343975.5,ENST00000287936.4	chr5	74654994:74655135:74655222:74655381:74655809:74655964,	74655223	74655381	74655331	74655331	Nonsense_Mutation	G	T	p.G803X
PAAD	TCGA-IB-7651-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4	chr2	24531485:24531625:24533152:24533249:24533357:24533561,	24533153	24533249	24533163	24533163	Nonsense_Mutation	C	A	p.G215X
PAAD	TCGA-IB-7651-01	CD300A	ENST00000582319.1	chr17	72473574:72473669:72477427:72477972:72480139:72480306,	72477428	72477972	72477915	72477915	Nonsense_Mutation	G	A	p.W239X
PAAD	TCGA-IB-7651-01	CD300A	ENST00000577511.1,ENST00000361933.3,ENST00000310828.5,ENST00000360141.3	chr17	72477427:72477465:72477864:72477972:72480139:72480306,	72477865	72477972	72477915	72477915	Nonsense_Mutation	G	A	p.W239X
PAAD	TCGA-IB-7651-01	VWA3B	ENST00000416277.1,ENST00000433678.1,ENST00000409460.1,ENST00000477737.1,ENST00000432242.1,ENST00000435344.1,ENST00000422503.2,ENST00000451075.2	chr2	98744701:98744871:98750286:98750402:98779313:98779439,	98750287	98750402	98750321	98750321	Nonsense_Mutation	G	T	p.E303X
PAAD	TCGA-IB-7651-01	DAB2	ENST00000320816.6	chr5	39381555:39381718:39382719:39383373:39388406:39388469,	39382720	39383373	39382969	39382969	Nonsense_Mutation	C	T	p.W364X
PAAD	TCGA-IB-7651-01	DLG1	ENST00000392382.2,ENST00000450955.1,ENST00000456699.2,ENST00000471733.1,ENST00000357674.4	chr3	196869588:196869639:196921295:196921460:197009549:197009716,196888510:196888609:196921295:196921460:197009549:197009716,196876625:196876667:196921295:196921460:197009549:197009716,	196921296	196921460	196921409	196921409	Nonsense_Mutation	G	A	p.Q124X
PAAD	TCGA-IB-7651-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74309063:74309161:74310709:74310839:74313178:74313393,	74310710	74310839	74310810	74310810	Nonsense_Mutation	G	T	p.G272X
PAAD	TCGA-IB-7651-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42862295:42862459:42862938:42863106:42863249:42863394,	42862939	42863106	42863068	42863068	Nonsense_Mutation	G	T	p.G1769X
PAAD	TCGA-IB-7651-01	TSPAN4	ENST00000409531.1,ENST00000527644.1,ENST00000397411.2,ENST00000397408.1,ENST00000397404.1,ENST00000346501.4,ENST00000397397.2,ENST00000409543.2,ENST00000397406.1	chr11	847200:847300:862549:862741:864436:864511,850287:850367:862549:862741:864436:864511,	862550	862741	862729	862729	Nonsense_Mutation	C	A	p.C81X
PAAD	TCGA-IB-7651-01	SNAP23	ENST00000249647.3,ENST00000563333.1,ENST00000568514.1,ENST00000563765.1	chr15	42807434:42807552:42821872:42822017:42823610:42823642,42820459:42820618:42821872:42822017:42823610:42823642,	42821873	42822017	42822003	42822003	Nonsense_Mutation	C	T	p.R186X
PAAD	TCGA-IB-7651-01	SEH1L	ENST00000587761.1,ENST00000399892.2,ENST00000588251.1,ENST00000262124.11	chr18	12948137:12948231:12955461:12955608:12963158:12963370,12951853:12951904:12955461:12955608:12963158:12963370,	12955462	12955608	12955494	12955494	Nonsense_Mutation	G	A	p.W65X
PAAD	TCGA-IB-7651-01	RPL18A	ENST00000599898.1,ENST00000600147.1,ENST00000597648.1,ENST00000599870.1,ENST00000222247.5	chr19	17972233:17972281:17972902:17973032:17973726:17973818,	17972903	17973032	17973031	17973031	Nonsense_Mutation	C	A	p.C109X
PAAD	TCGA-IB-7651-01	TRAFD1	ENST00000257604.5,ENST00000412615.2	chr12	112578622:112579028:112579892:112580099:112583389:112583466,	112579893	112580099	112579955	112579955	Nonsense_Mutation	G	T	p.E236X
PAAD	TCGA-IB-7651-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078761	117078761	Nonsense_Mutation	G	A	p.R152X
PAAD	TCGA-IB-7651-01	PHKG1	ENST00000537360.1,ENST00000395428.2	chr7	56151342:56151408:56155290:56155469:56156551:56156668,	56155291	56155469	56155447	56155447	Nonsense_Mutation	G	A	p.R36X
PAAD	TCGA-IB-7651-01	NFATC2	ENST00000609943.1,ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000396009.3,ENST00000610033.1	chr20	50052242:50052298:50071084:50071225:50090516:50090689,	50071085	50071225	50071220	50071220	Nonsense_Mutation	G	A	p.R572X
PAAD	TCGA-IB-7651-01	LMBR1	ENST00000434503.1,ENST00000448926.1,ENST00000540390.1,ENST00000359422.4,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156554827:156554892:156555801:156555870:156556362:156556489,	156555802	156555870	156555863	156555863	Nonsense_Mutation	C	T	p.W186X
PAAD	TCGA-IB-7651-01	MFF	ENST00000337110.7,ENST00000304593.9,ENST00000354503.6,ENST00000349901.7	chr2	228190158:228190258:228195341:228195562:228197134:228197215,228190080:228190143:228195341:228195562:228197134:228197215,228194321:228194499:228195341:228195562:228197134:228197215,228193393:228193505:228195341:228195562:228197134:228197215,	228195342	228195562	228195439	228195439	Nonsense_Mutation	C	T	p.R46X
PAAD	TCGA-IB-7651-01	MFF	ENST00000460756.1	chr2	228190080:228190143:228193393:228195562:228197134:228197215,	228193394	228195562	228195439	228195439	Nonsense_Mutation	C	T	p.R46X
PAAD	TCGA-IB-7651-01	MFF	ENST00000489696.1	chr2	228193393:228193505:228195310:228195562:228197134:228197215,	228195311	228195562	228195439	228195439	Nonsense_Mutation	C	T	p.R46X
PAAD	TCGA-IB-7651-01	RASGRP1	ENST00000557875.1	chr15	38786652:38786968:38790994:38791385:38792303:38792340,	38790995	38791385	38791016	38791016	Nonsense_Mutation	C	A	p.G618X
PAAD	TCGA-IB-7651-01	RASGRP1	ENST00000559830.1	chr15	38786652:38786968:38790994:38791147:38792303:38792340,38782754:38782889:38790994:38791147:38792303:38792340,	38790995	38791147	38791016	38791016	Nonsense_Mutation	C	A	p.G618X
PAAD	TCGA-IB-7651-01	SCG3	ENST00000542355.2,ENST00000220478.3	chr15	51975275:51975321:51975415:51975631:51980456:51980599,	51975416	51975631	51975574	51975574	Nonsense_Mutation	C	T	p.R114X
PAAD	TCGA-IB-7651-01	B3GALNT2	ENST00000494378.1,ENST00000478199.2	chr1	235643419:235643465:235647637:235647831:235657990:235658138,	235647638	235647831	235647766	235647766	Nonsense_Mutation	G	A	p.R143X
PAAD	TCGA-IB-7651-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640365	36640365	Nonsense_Mutation	G	T	p.C618X
PAAD	TCGA-IB-7651-01	BTAF1	ENST00000265990.6	chr10	93711159:93711323:93713493:93713630:93716284:93716414,	93713494	93713630	93713536	93713536	Nonsense_Mutation	G	T	p.G203X
PAAD	TCGA-IB-7651-01	ABHD6	ENST00000295962.4,ENST00000478253.1	chr3	58256658:58256791:58260384:58260542:58270811:58270866,	58260385	58260542	58260429	58260429	Nonsense_Mutation	G	T	p.E190X
PAAD	TCGA-IB-7651-01	WSCD1	ENST00000574946.1,ENST00000317744.5,ENST00000574232.1,ENST00000539421.1	chr17	5984063:5984405:5991309:5991424:5993640:5993825,	5991310	5991424	5991326	5991326	Nonsense_Mutation	C	A	p.C148X
PAAD	TCGA-IB-7651-01	WDHD1	ENST00000420358.2,ENST00000360586.3,ENST00000421192.1	chr14	55453936:55454105:55455745:55455930:55457930:55458100,	55455746	55455930	55455901	55455901	Nonsense_Mutation	G	T	p.C457X
PAAD	TCGA-IB-7651-01	SAMD8	ENST00000372690.3,ENST00000542569.1,ENST00000372687.4	chr10	76924402:76924498:76928298:76928416:76935823:76935974,	76928299	76928416	76928312	76928312	Nonsense_Mutation	C	T	p.R230X
PAAD	TCGA-IB-7651-01	MCM10	ENST00000378714.3,ENST00000378694.1,ENST00000484800.2	chr10	13243420:13243534:13246218:13246364:13251090:13251133,	13246219	13246364	13246275	13246275	Nonsense_Mutation	C	A	p.Y804X
PAAD	TCGA-IB-7651-01	SNRK	ENST00000429705.2	chr3	43328077:43328167:43344589:43345284:43373660:43373802,	43344590	43345284	43344702	43344702	Nonsense_Mutation	G	T	p.G3X
PAAD	TCGA-IB-7651-01	PLEKHA7	ENST00000525581.1,ENST00000531079.1,ENST00000355661.3,ENST00000525049.1,ENST00000530489.1,ENST00000525781.1,ENST00000531066.1,ENST00000448080.2	chr11	16822571:16822622:16823214:16823364:16824518:16824599,	16823215	16823364	16823313	16823313	Nonsense_Mutation	G	A	p.R737X
PAAD	TCGA-IB-7651-01	WDR33	ENST00000322313.4	chr2	128467266:128467430:128471156:128471595:128474728:128474837,	128471157	128471595	128471362	128471362	Nonsense_Mutation	G	A	p.R1035X
PAAD	TCGA-IB-7651-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219362748:219362880:219374701:219374863:219394678:219394763,	219374702	219374863	219374752	219374752	Nonsense_Mutation	C	T	p.W325X
PAAD	TCGA-IB-7651-01	TRIB3	ENST00000422053.2,ENST00000217233.3,ENST00000449710.1	chr20	368654:368945:371930:372223:376841:377072,	371931	372223	372084	372084	Nonsense_Mutation	C	T	p.R149X
PAAD	TCGA-IB-7651-01	COL1A2	ENST00000481570.1	chr7	94055309:94055363:94055734:94056373:94056499:94056571,	94055735	94056373	94055816	94055816	Nonsense_Mutation	G	T	p.G1027X
PAAD	TCGA-IB-7651-01	DECR2	ENST00000437024.1,ENST00000429116.1,ENST00000424398.2,ENST00000439661.1,ENST00000219481.5	chr16	460971:461076:461360:461578:461889:461928,	461361	461578	461408	461408	Nonsense_Mutation	C	T	p.Q237X
PAAD	TCGA-IB-7651-01	DLAT	ENST00000531306.1,ENST00000533297.1,ENST00000280346.6,ENST00000537636.1,ENST00000393051.1	chr11	111915861:111915954:111916586:111916694:111921957:111922073,	111916587	111916694	111916599	111916599	Nonsense_Mutation	C	T	p.R435X
PAAD	TCGA-IB-7651-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67645871	67645871	Nonsense_Mutation	C	T	p.Q267X
PAAD	TCGA-IB-7651-01	RAPGEF3	ENST00000171000.4,ENST00000548919.1,ENST00000479866.1,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000395358.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2,ENST00000494764.1	chr12	48140642:48140682:48141326:48141409:48141494:48141645,	48141327	48141409	48141337	48141337	Nonsense_Mutation	G	A	p.R516X
PAAD	TCGA-IB-7651-01	ATAD2B	ENST00000238789.5,ENST00000381024.4	chr2	24021007:24021193:24033185:24033372:24042616:24042725,	24033186	24033372	24033200	24033200	Nonsense_Mutation	C	A	p.E814X
PAAD	TCGA-IB-7651-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877748	150877748	Nonsense_Mutation	G	T	p.G323X
PAAD	TCGA-IB-7651-01	CNTN3	ENST00000263665.6	chr3	74414716:74414853:74418339:74418524:74419039:74419142,	74418340	74418524	74418379	74418379	Nonsense_Mutation	G	A	p.R303X
PAAD	TCGA-IB-7651-01	RBM48	ENST00000265732.5	chr7	92161717:92161863:92163715:92164284:92166164:92166848,	92163716	92164284	92164195	92164195	Nonsense_Mutation	G	T	p.G310X
PAAD	TCGA-IB-7651-01	PAPSS1	ENST00000514489.1,ENST00000502431.1,ENST00000265174.4	chr4	108608284:108608333:108614926:108615162:108622326:108622441,	108614927	108615162	108615089	108615089	Nonsense_Mutation	G	T	p.C83X
PAAD	TCGA-IB-7651-01	MRPL48	ENST00000411840.2,ENST00000398483.3,ENST00000310614.7,ENST00000540162.1,ENST00000508278.2,ENST00000535529.1,ENST00000314282.7,ENST00000544819.1	chr11	73555851:73556021:73570951:73571054:73574216:73574306,	73570952	73571054	73571043	73571043	Nonsense_Mutation	C	T	p.R155X
PAAD	TCGA-IB-7651-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263600	1263600	Nonsense_Mutation	C	A	p.C1830X
PAAD	TCGA-IB-7651-01	VEPH1	ENST00000392832.2,ENST00000392833.2,ENST00000543418.1,ENST00000468233.1,ENST00000487753.1,ENST00000494677.1,ENST00000537559.1,ENST00000362010.2	chr3	157178003:157178144:157188102:157188318:157213000:157213295,	157188103	157188318	157188105	157188105	Nonsense_Mutation	G	A	p.Q118X
PAAD	TCGA-IB-7651-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289171	31289171	Nonsense_Mutation	G	A	p.W644X
PAAD	TCGA-IB-7651-01	TANC1	ENST00000454300.1	chr2	160006880:160007067:160019793:160020057:160025760:160025862,159992709:159992809:160019793:160020057:160025760:160025862,	160019794	160020057	160019849	160019849	Nonsense_Mutation	G	A	p.W246X
PAAD	TCGA-IB-7651-01	ZNF90	ENST00000418063.2,ENST00000473524.1	chr19	20188845:20188944:20215047:20215174:20216029:20216125,	20215048	20215174	20215098	20215098	Nonsense_Mutation	G	A	p.W18X
PAAD	TCGA-IB-7651-01	PIK3R4	ENST00000356763.3	chr3	130452391:130452974:130454712:130454846:130463329:130464108,	130454713	130454846	130454718	130454718	Nonsense_Mutation	C	A	p.E288X
PAAD	TCGA-IB-7651-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406463	91406463	Nonsense_Mutation	C	A	p.E150X
PAAD	TCGA-IB-7651-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677775	88677775	Nonsense_Mutation	C	T	p.R436X
PAAD	TCGA-IB-7651-01	DCAF13	ENST00000518554.1,ENST00000519682.1	chr8	104427639:104427744:104432491:104432691:104438283:104438373,104427639:104427744:104432491:104432691:104433202:104433310,	104432492	104432691	104432575	104432575	Nonsense_Mutation	C	T	p.R204X
PAAD	TCGA-IB-7651-01	OCIAD1	ENST00000506801.1,ENST00000509246.1	chr4	48835417:48835498:48844652:48844706:48850415:48850427,48833243:48833266:48844652:48844706:48850415:48850427,	48844653	48844706	48844691	48844691	Nonsense_Mutation	G	T	p.G65X
PAAD	TCGA-IB-7651-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224357	51224357	Nonsense_Mutation	G	A	p.R1131X
PAAD	TCGA-IB-7651-01	HSD17B11	ENST00000502576.1,ENST00000512344.1,ENST00000507518.1,ENST00000507286.1,ENST00000358290.4	chr4	88258426:88258518:88261641:88261758:88278430:88278568,	88261642	88261758	88261694	88261694	Nonsense_Mutation	G	A	p.Q254X
PAAD	TCGA-IB-7651-01	SLC35A3	ENST00000370153.1,ENST00000533028.1,ENST00000427993.2,ENST00000370156.3,ENST00000465289.1,ENST00000370155.3,ENST00000422078.1	chr1	100464816:100464971:100472589:100472712:100476920:100477089,	100472590	100472712	100472710	100472710	Nonsense_Mutation	C	T	p.Q197X
PAAD	TCGA-IB-7651-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660200	77660200	Nonsense_Mutation	C	T	p.R292X
PAAD	TCGA-IB-7651-01	MIEN1	ENST00000469568.1,ENST00000394231.3	chr17	37885408:37885858:37885937:37886014:37886446:37886544,	37885938	37886014	37885946	37885946	Nonsense_Mutation	C	A	p.E86X
PAAD	TCGA-IB-7651-01	MCM6	ENST00000264156.2	chr2	136597195:136598521:136602114:136602254:136603806:136603962,	136602115	136602254	136602208	136602208	Nonsense_Mutation	G	T	p.Y752X
PAAD	TCGA-IB-7651-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2,ENST00000550968.1	chr12	112641439:112641576:112642289:112642427:112645677:112645804,	112642290	112642427	112642296	112642296	Nonsense_Mutation	G	A	p.R2621X
PAAD	TCGA-IB-7651-01	RBCK1	ENST00000475269.1	chr20	389362:389423:390524:390669:398169:398263,389334:389423:390524:390669:391055:391166,	390525	390669	390527	390527	Nonsense_Mutation	G	T	p.E9X
PAAD	TCGA-IB-7651-01	RBCK1	ENST00000400245.3	chr20	389334:389423:390473:390669:391055:391166,	390474	390669	390527	390527	Nonsense_Mutation	G	T	p.E9X
PAAD	TCGA-IB-7651-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95918455:95918564:95922582:95922778:95926604:95928102,	95922583	95922778	95922698	95922698	Nonsense_Mutation	A	C	p.Y503X
PAAD	TCGA-IB-7651-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144996821	144996821	Nonsense_Mutation	C	A	p.E2563X
PAAD	TCGA-IB-7651-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19140819:19140951:19144163:19144278:19146106:19146167,	19144164	19144278	19144199	19144199	Nonsense_Mutation	C	A	p.E596X
PAAD	TCGA-IB-7651-01	SGCE	ENST00000437425.2	chr7	94252639:94252709:94257513:94257671:94285301:94285410,	94257514	94257671	94257604	94257604	Nonsense_Mutation	C	T	p.W100X
PAAD	TCGA-IB-7651-01	KLKB1	ENST00000511608.1,ENST00000264690.6,ENST00000511406.1	chr4	187177145:187177241:187178379:187178519:187179174:187179446,	187178380	187178519	187178451	187178451	Nonsense_Mutation	C	T	p.Q553X
PAAD	TCGA-IB-7651-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599117.1,ENST00000598725.1	chr19	39950531:39950600:39955437:39955689:39957119:39957209,	39955438	39955689	39955444	39955444	Nonsense_Mutation	C	T	p.Q211X
PAAD	TCGA-IB-7651-01	SPARCL1	ENST00000282470.6,ENST00000503414.1,ENST00000418378.1	chr4	88394569:88394955:88400581:88400730:88401523:88401672,	88400582	88400730	88400699	88400699	Nonsense_Mutation	G	A	p.R617X
PAAD	TCGA-IB-7651-01	NEK8	ENST00000268766.6	chr17	27066101:27066219:27067480:27067631:27067839:27068003,	27067481	27067631	27067558	27067558	Nonsense_Mutation	C	T	p.R499X
PAAD	TCGA-IB-7651-01	MSH6	ENST00000445503.1	chr2	48010308:48010632:48018065:48018262:48023032:48023175,48010308:48010632:48018065:48018262:48025749:48025766,	48018066	48018262	48018178	48018178	Nonsense_Mutation	A	T	p.K125X
PAAD	TCGA-IB-7651-01	TBRG4	ENST00000478532.1	chr7	45145039:45145363:45148530:45148886:45151262:45151307,	45148531	45148886	45148815	45148815	Nonsense_Mutation	G	A	p.R19X
PAAD	TCGA-IB-7651-01	TBRG4	ENST00000361278.3	chr7	45145039:45145363:45148425:45148886:45151262:45151307,45145039:45145363:45148425:45148886:45151241:45151279,	45148426	45148886	45148815	45148815	Nonsense_Mutation	G	A	p.R19X
PAAD	TCGA-IB-7651-01	TBRG4	ENST00000494076.1	chr7	45145039:45145363:45148425:45148842:45151241:45151279,	45148426	45148842	45148815	45148815	Nonsense_Mutation	G	A	p.R19X
PAAD	TCGA-IB-7651-01	FHL3	ENST00000475084.1	chr1	38463016:38463231:38463355:38463542:38464645:38464820,	38463356	38463542	38463501	38463501	Nonsense_Mutation	C	T	p.W181X
PAAD	TCGA-IB-7651-01	ZNF254	ENST00000594886.1,ENST00000595187.1,ENST00000357002.4	chr19	24288741:24288868:24289349:24289445:24309055:24309122,	24289350	24289445	24289407	24289407	Nonsense_Mutation	G	A	p.W72X
PAAD	TCGA-IB-7651-01	TNIK	ENST00000538048.1,ENST00000460047.1,ENST00000488470.1,ENST00000284483.8,ENST00000436636.2	chr3	170855979:170856168:170857258:170857345:170858187:170858298,	170857259	170857345	170857333	170857333	Nonsense_Mutation	G	A	p.R449X
PAAD	TCGA-IB-7651-01	SAMHD1	ENST00000262878.4	chr20	35559162:35559278:35563431:35563592:35569441:35569514,	35563432	35563592	35563508	35563508	Nonsense_Mutation	G	A	p.R145X
PAAD	TCGA-IB-7651-01	ELP6	ENST00000449409.1,ENST00000296149.4,ENST00000414236.1,ENST00000444760.1,ENST00000412761.1,ENST00000439305.1,ENST00000461208.1,ENST00000425291.1	chr3	47543205:47543341:47545819:47545938:47551673:47551744,	47545820	47545938	47545887	47545887	Nonsense_Mutation	C	A	p.G86X
PAAD	TCGA-IB-7651-01	PLEKHA7	ENST00000355661.3,ENST00000531066.1,ENST00000448080.2	chr11	16847666:16848137:16863093:16863269:16872737:16872834,	16863094	16863269	16863183	16863183	Nonsense_Mutation	G	T	p.Y261X
PAAD	TCGA-IB-7651-01	NDFIP1	ENST00000253814.4	chr5	141520127:141520194:141524135:141524241:141531295:141533760,	141524136	141524241	141524156	141524156	Nonsense_Mutation	G	T	p.G195X
PAAD	TCGA-IB-7651-01	TMEM173	ENST00000510817.1,ENST00000514119.1,ENST00000511886.1,ENST00000509573.1,ENST00000503287.1,ENST00000512606.1,ENST00000330794.4	chr5	138858046:138858093:138860374:138860483:138860743:138860927,	138860375	138860483	138860412	138860412	Nonsense_Mutation	C	T	p.W161X
PAAD	TCGA-IB-7651-01	SEMA5A	ENST00000382496.5	chr5	9337824:9337924:9379934:9380135:9437867:9437964,	9379935	9380135	9380032	9380032	Nonsense_Mutation	C	T	p.W9X
PAAD	TCGA-IB-7651-01	STEAP4	ENST00000380079.4	chr7	87910229:87910394:87911955:87912483:87913128:87913205,	87911956	87912483	87912325	87912325	Nonsense_Mutation	A	C	p.Y205X
PAAD	TCGA-IB-7651-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000334686.6,ENST00000494598.1	chr3	155218491:155218583:155222343:155222415:155232511:155232673,	155222344	155222415	155222376	155222376	Nonsense_Mutation	G	A	p.R546X
PAAD	TCGA-IB-7651-01	RAB8A	ENST00000300935.3,ENST00000586682.1,ENST00000589697.1,ENST00000587156.1	chr19	16229035:16229096:16232559:16232620:16236279:16236357,	16232560	16232620	16232605	16232605	Nonsense_Mutation	C	A	p.Y77X
PAAD	TCGA-IB-7651-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672574	186672574	Nonsense_Mutation	G	T	p.E6270X
PAAD	TCGA-IB-7651-01	LACTB2	ENST00000276590.4,ENST00000522447.1	chr8	71550785:71550864:71553136:71553285:71556299:71556363,	71553137	71553285	71553220	71553220	Nonsense_Mutation	G	A	p.R220X
PAAD	TCGA-IB-7651-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26942681:26942816:26943113:26943215:26943396:26943527,	26943114	26943215	26943182	26943182	Nonsense_Mutation	G	A	p.R2108X
PAAD	TCGA-IB-7651-01	EPS8L1	ENST00000540810.1	chr19	55589460:55589496:55591057:55591219:55591496:55591551,55587775:55587829:55591057:55591219:55591496:55591551,	55591058	55591219	55591075	55591075	Nonsense_Mutation	C	A	p.C45X
PAAD	TCGA-IB-7651-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100029193	100029193	Nonsense_Mutation	C	T	p.R518X
PAAD	TCGA-IB-7651-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156911	145156911	Nonsense_Mutation	G	A	p.Q615X
PAAD	TCGA-IB-7651-01	TMEM39A	ENST00000490099.1,ENST00000319172.5,ENST00000468676.1,ENST00000486235.1	chr3	119165865:119166019:119171293:119171377:119176864:119176930,	119171294	119171377	119171296	119171296	Nonsense_Mutation	C	A	p.E140X
PAAD	TCGA-IB-7651-01	ANKZF1	ENST00000410034.3,ENST00000409849.1,ENST00000323348.5,ENST00000477479.1	chr2	220099553:220100034:220100195:220100307:220100429:220100523,	220100196	220100307	220100257	220100257	Nonsense_Mutation	C	T	p.R585X
PAAD	TCGA-IB-7651-01	ZC3H7B	ENST00000352645.4,ENST00000351589.4,ENST00000486331.1	chr22	41721724:41721922:41723209:41723368:41726026:41726107,	41723210	41723368	41723231	41723231	Nonsense_Mutation	G	T	p.E103X
PAAD	TCGA-IB-7651-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000505285.1,ENST00000296702.5	chr5	145872482:145872601:145878098:145878249:145882937:145883102,	145878099	145878249	145878172	145878172	Nonsense_Mutation	C	T	p.R769X
PAAD	TCGA-IB-7651-01	DDOST	ENST00000375048.3	chr1	20982593:20982680:20987373:20987484:20987689:20987862,	20987374	20987484	20987419	20987419	Nonsense_Mutation	C	A	p.E91X
PAAD	TCGA-IB-7651-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548540	212548540	Nonsense_Mutation	G	A	p.Q357X
PAAD	TCGA-IB-7651-01	ACAA1	ENST00000444607.2,ENST00000333167.8,ENST00000301810.7,ENST00000421218.1,ENST00000411549.1	chr3	38173416:38173496:38175442:38175500:38178082:38178115,	38175443	38175500	38175489	38175489	Nonsense_Mutation	G	A	p.Q93X
PAAD	TCGA-IB-7651-01	PRDM4	ENST00000228437.5	chr12	108140051:108140201:108145191:108145986:108147700:108147886,	108145192	108145986	108145246	108145246	Nonsense_Mutation	G	A	p.Q358X
PAAD	TCGA-IB-7651-01	STXBP6	ENST00000419632.2,ENST00000550887.1,ENST00000323944.5,ENST00000546511.1,ENST00000548724.1,ENST00000396700.1	chr14	25281697:25281938:25288242:25288400:25325141:25325307,	25288243	25288400	25288317	25288317	Nonsense_Mutation	G	A	p.R179X
PAAD	TCGA-IB-7651-01	MYRIP	ENST00000302541.6,ENST00000396217.3,ENST00000539167.1,ENST00000459828.1,ENST00000458441.1,ENST00000444716.1	chr3	40251344:40251584:40275349:40275544:40285936:40286098,	40275350	40275544	40275428	40275428	Nonsense_Mutation	G	T	p.G662X
PAAD	TCGA-IB-7651-01	MYRIP	ENST00000458292.1	chr3	40251344:40251584:40275386:40275544:40285936:40286098,	40275387	40275544	40275428	40275428	Nonsense_Mutation	G	T	p.G662X
PAAD	TCGA-2L-AAQJ-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914871	39914871	Nonsense_Mutation	C	G	p.S1033X
PAAD	TCGA-2L-AAQJ-01	STK32A	ENST00000398523.3,ENST00000306304.6,ENST00000397936.3	chr5	146741079:146741177:146750216:146750333:146752731:146752857,	146750217	146750333	146750320	146750320	Nonsense_Mutation	C	A	p.S255X
PAAD	TCGA-2L-AAQJ-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2,ENST00000550968.1	chr12	112641439:112641576:112642289:112642427:112645677:112645804,	112642290	112642427	112642326	112642326	Nonsense_Mutation	C	A	p.E2611X
PAAD	TCGA-XN-A8T3-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10384815:10384953:10386168:10386417:10394577:10394696,	10386169	10386417	10386197	10386197	Nonsense_Mutation	G	T	p.E856X
PAAD	TCGA-XN-A8T3-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491644	107491644	Nonsense_Mutation	C	A	p.S359X
PAAD	TCGA-XN-A8T3-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920765	107920765	Nonsense_Mutation	C	A	p.S128X
PAAD	TCGA-XN-A8T3-01	ABCA4	ENST00000370225.3,ENST00000535881.1,ENST00000536513.1	chr1	94463416:94463666:94466391:94466484:94466557:94466661,	94466392	94466484	94466426	94466426	Nonsense_Mutation	G	A	p.R2149X
PAAD	TCGA-XN-A8T3-01	LIMS2	ENST00000410011.1	chr2	128412403:128412470:128414976:128415136:128431251:128431317,128412403:128412470:128414976:128415136:128432587:128432676,128412403:128412470:128414976:128415136:128438893:128439360,	128414977	128415136	128415072	128415072	Nonsense_Mutation	C	A	p.E50X
PAAD	TCGA-XN-A8T3-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000469470.1,ENST00000457718.1,ENST00000450444.1	chr7	47409093:47409218:47436396:47436501:47439989:47440035,	47436397	47436501	47436496	47436496	Nonsense_Mutation	C	A	p.E309X
PAAD	TCGA-XN-A8T3-01	PARP9	ENST00000360356.2,ENST00000462315.1,ENST00000489652.1,ENST00000477522.2,ENST00000492382.1,ENST00000471785.1	chr3	122255789:122255920:122259318:122259699:122264278:122264336,	122259319	122259699	122259324	122259324	Nonsense_Mutation	G	T	p.S622X
PAAD	TCGA-XN-A8T3-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244838	41244838	Nonsense_Mutation	C	A	p.E904X
PAAD	TCGA-XN-A8T3-01	PRDM5	ENST00000264808.3,ENST00000428209.2	chr4	121631463:121631568:121675707:121675793:121698342:121698436,	121675708	121675793	121675791	121675791	Nonsense_Mutation	C	A	p.E514X
PAAD	TCGA-XN-A8T3-01	SUN2	ENST00000406622.1,ENST00000405018.1,ENST00000469086.1,ENST00000477262.1,ENST00000216064.4,ENST00000411587.2,ENST00000405510.1	chr22	39135346:39135431:39135726:39135948:39136271:39136437,	39135727	39135948	39135797	39135797	Nonsense_Mutation	G	T	p.S524X
PAAD	TCGA-XN-A8T3-01	LGALS3	ENST00000556438.2,ENST00000254301.9	chr14	55606992:55607081:55609301:55609467:55611833:55612121,	55609302	55609467	55609433	55609433	Nonsense_Mutation	C	A	p.S188X
PAAD	TCGA-XN-A8T3-01	SKOR1	ENST00000554240.1	chr15	68115894:68115998:68118273:68120482:68121516:68121607,	68118274	68120482	68118671	68118671	Nonsense_Mutation	G	T	p.E355X
PAAD	TCGA-2J-AABV-01	SCN8A	ENST00000550891.1,ENST00000355133.3,ENST00000354534.6,ENST00000545061.1	chr12	52139686:52139819:52145138:52145377:52156286:52156460,	52145139	52145377	52145205	52145205	Nonsense_Mutation	G	A	p.W733X
PAAD	TCGA-IB-7886-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-IB-7886-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-IB-A5SQ-01	RDX	ENST00000528498.1,ENST00000544551.1,ENST00000530131.1,ENST00000530749.1,ENST00000528900.1,ENST00000343115.4,ENST00000405097.1	chr11	110106823:110106916:110108216:110108377:110118427:110118558,	110108217	110108377	110108327	110108327	Nonsense_Mutation	G	A	p.R381X
PAAD	TCGA-F2-A44G-01	HELQ	ENST00000508591.1,ENST00000295488.3,ENST00000510985.1	chr4	84339245:84339359:84342715:84342889:84347146:84347245,	84342716	84342889	84342813	84342813	Nonsense_Mutation	C	T	p.W951X
PAAD	TCGA-F2-A44G-01	EEF2	ENST00000309311.6	chr19	3979326:3979434:3979805:3980064:3980511:3980707,	3979806	3980064	3980040	3980040	Nonsense_Mutation	G	T	p.Y457X
PAAD	TCGA-2J-AABE-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492875	56492875	Nonsense_Mutation	G	A	p.Q22X
PAAD	TCGA-HZ-8636-01	OSGEP	ENST00000555223.1,ENST00000555656.1,ENST00000206542.4,ENST00000554249.1,ENST00000555785.1	chr14	20915836:20915849:20916062:20916153:20916264:20916330,	20916063	20916153	20916117	20916117	Nonsense_Mutation	G	A	p.R247X
PAAD	TCGA-S4-A8RM-01	ANKRD53	ENST00000441349.1,ENST00000272421.6	chr2	71209706:71209827:71211252:71211379:71211740:71212469,	71211253	71211379	71211256	71211256	Nonsense_Mutation	C	T	p.Q303X
PAAD	TCGA-IB-A6UG-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-IB-A6UG-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-IB-A6UG-01	IRX6	ENST00000290552.7	chr16	55361207:55361317:55361497:55361805:55362611:55363223,	55361498	55361805	55361532	55361532	Nonsense_Mutation	C	T	p.R150X
PAAD	TCGA-IB-A6UG-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176X
PAAD	TCGA-IB-A7LX-01	NUMB	ENST00000555238.1,ENST00000557597.1,ENST00000359560.3,ENST00000355058.3,ENST00000535282.1,ENST00000556772.1	chr14	73743916:73744001:73745988:73746132:73749066:73749213,	73745989	73746132	73745991	73745991	Nonsense_Mutation	G	T	p.S413X
PAAD	TCGA-IB-A7LX-01	GTDC1	ENST00000344850.4,ENST00000392871.2,ENST00000491448.1,ENST00000542155.1,ENST00000409214.1,ENST00000241391.5,ENST00000392869.2,ENST00000437114.1,ENST00000392867.3,ENST00000409298.1	chr2	144899448:144899622:144903138:144903306:144966169:144966371,	144903139	144903306	144903272	144903272	Nonsense_Mutation	C	A	p.E72X
PAAD	TCGA-IB-A7LX-01	POLA1	ENST00000379059.3,ENST00000379068.3	chrX	24759491:24759621:24760118:24760238:24761346:24761446,	24760119	24760238	24760146	24760146	Nonsense_Mutation	G	T	p.E786X
PAAD	TCGA-IB-A7LX-01	REPS1	ENST00000478483.2	chr6	139226028:139226269:139229804:139229953:139232412:139232508,	139229805	139229953	139229866	139229866	Nonsense_Mutation	C	A	p.E718X
PAAD	TCGA-IB-A7LX-01	PRDX2	ENST00000301522.2	chr19	12907633:12907980:12910672:12910803:12910990:12911113,	12910673	12910803	12910685	12910685	Nonsense_Mutation	C	A	p.K167X
PAAD	TCGA-IB-A7LX-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603246	95603246	Nonsense_Mutation	G	T	p.S605X
PAAD	TCGA-IB-A7LX-01	STAU1	ENST00000371828.3,ENST00000340954.7,ENST00000371802.1,ENST00000371792.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47732318:47732404:47733662:47733785:47734313:47734633,	47733663	47733785	47733749	47733749	Nonsense_Mutation	C	A	p.E516X
PAAD	TCGA-IB-A7LX-01	ETFDH	ENST00000507475.1,ENST00000307738.5,ENST00000511912.1	chr4	159605743:159605825:159606252:159606371:159611499:159611577,	159606253	159606371	159606318	159606318	Nonsense_Mutation	G	T	p.E185X
PAAD	TCGA-IB-A7LX-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120702560:120702739:120707499:120707553:120732667:120732743,	120707500	120707553	120707506	120707506	Nonsense_Mutation	G	T	p.E233X
PAAD	TCGA-IB-A7LX-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151669965	151669965	Nonsense_Mutation	G	T	p.E147X
PAAD	TCGA-IB-A7LX-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859044	32859044	Nonsense_Mutation	C	A	p.S123X
PAAD	TCGA-HZ-A8P1-01	IKBKB	ENST00000519735.1,ENST00000521661.1,ENST00000342222.2,ENST00000518647.1	chr8	42128953:42128987:42129600:42129723:42147673:42147791,42128953:42128987:42129600:42129723:42146151:42146246,	42129601	42129723	42129663	42129663	Nonsense_Mutation	G	A	p.W15X
PAAD	TCGA-2L-AAQA-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000605210.1,ENST00000454282.1	chr5	72192882:72192978:72195832:72195908:72196800:72196900,	72195833	72195908	72195908	72195908	Nonsense_Mutation	G	A	p.W805X
PAAD	TCGA-HZ-7922-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
PAAD	TCGA-HZ-A8P0-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58X
PAAD	TCGA-HZ-A8P0-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58X
PAAD	TCGA-YB-A89D-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255889	9255889	Nonsense_Mutation	C	A	p.S875X
PAAD	TCGA-YB-A89D-01	RAPGEF3	ENST00000171000.4,ENST00000479866.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2	chr12	48134697:48134823:48135287:48135385:48137312:48137459,	48135288	48135385	48135329	48135329	Nonsense_Mutation	C	A	p.E628X
PAAD	TCGA-YB-A89D-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	75022205:75022396:75052556:75052821:75070337:75070408,	75052557	75052821	75052666	75052666	Nonsense_Mutation	C	A	p.E241X
PAAD	TCGA-IB-7889-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298X
PAAD	TCGA-IB-7889-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-IB-7889-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-3A-A9J0-01	MYO5C	ENST00000261839.7	chr15	52531929:52532076:52534244:52534410:52536552:52536715,	52534245	52534410	52534277	52534277	Nonsense_Mutation	G	A	p.R842X
PAAD	TCGA-3A-A9J0-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158047	27158047	Nonsense_Mutation	G	T	p.E91X
PAAD	TCGA-IB-7645-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
PAAD	TCGA-HV-A5A4-01	CHIT1	ENST00000255427.3,ENST00000367229.1,ENST00000535569.1	chr1	203186429:203186500:203186866:203186993:203188343:203188457,203181962:203182173:203186866:203186993:203188343:203188457,203186075:203186261:203186866:203186993:203188343:203188457,	203186867	203186993	203186975	203186975	Nonsense_Mutation	T	A	p.K350X
PAAD	TCGA-IB-7890-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578254	7578254	Nonsense_Mutation	C	A	p.G199X
PAAD	TCGA-IB-A5SO-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
PAAD	TCGA-2J-AAB9-01	LONP1	ENST00000589473.1,ENST00000587552.1,ENST00000585374.1,ENST00000590729.1,ENST00000540670.2,ENST00000360614.3,ENST00000590558.1,ENST00000593119.1	chr19	5693308:5693473:5693562:5693780:5694397:5694557,	5693563	5693780	5693658	5693658	Nonsense_Mutation	G	A	p.E815X
PAAD	TCGA-2J-AAB9-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579377	7579377	Nonsense_Mutation	G	A	p.Q104X
PAAD	TCGA-2J-AAB9-01	CROCC	ENST00000375541.5	chr1	17250819:17250974:17256340:17256526:17256618:17256702,	17256341	17256526	17256454	17256454	Nonsense_Mutation	C	G	p.Y155X
PAAD	TCGA-OE-A75W-01	MND1	ENST00000509752.1,ENST00000240488.3,ENST00000504860.1	chr4	154315413:154315488:154318370:154318485:154330122:154330167,	154318371	154318485	154318479	154318479	Nonsense_Mutation	G	T	p.E154X
PAAD	TCGA-OE-A75W-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
PAAD	TCGA-3A-A9IU-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120X
PAAD	TCGA-3A-A9IU-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120X
PAAD	TCGA-HZ-A77Q-01	IKZF1	ENST00000343574.5,ENST00000438033.1,ENST00000471793.1,ENST00000331340.3	chr7	50450237:50450405:50455042:50455168:50459426:50459485,	50455043	50455168	50455075	50455075	Nonsense_Mutation	C	T	p.R208X
PAAD	TCGA-HZ-A77Q-01	PTPRN	ENST00000295718.2,ENST00000446182.1,ENST00000440552.1,ENST00000412847.1,ENST00000451506.1,ENST00000606213.1,ENST00000409251.3,ENST00000442029.1,ENST00000423636.2	chr2	220168456:220168553:220172165:220172279:220172513:220172564,	220172166	220172279	220172205	220172205	Nonsense_Mutation	G	A	p.Q81X
PAAD	TCGA-2J-AABA-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101342	27101342	Nonsense_Mutation	G	T	p.E1542X
PAAD	TCGA-S4-A8RP-01	CANT1	ENST00000591773.1,ENST00000302345.2,ENST00000392446.5	chr17	76989865:76990002:76991099:76991303:76993073:76993726,	76991100	76991303	76991271	76991271	Nonsense_Mutation	C	A	p.E222X
PAAD	TCGA-S4-A8RP-01	AFMID	ENST00000592988.1,ENST00000586542.1,ENST00000409257.5,ENST00000327898.5,ENST00000591256.1,ENST00000588199.1,ENST00000591538.1	chr17	76187050:76187141:76198579:76198684:76198783:76198815,	76198580	76198684	76198676	76198676	Nonsense_Mutation	C	A	p.S84X
PAAD	TCGA-IB-7888-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192X
PAAD	TCGA-IB-7888-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229365	7229365	Nonsense_Mutation	C	T	p.Q345X
PAAD	TCGA-IB-7888-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195515980	195515980	Nonsense_Mutation	G	T	p.S824X
PAAD	TCGA-IB-7888-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229368	7229368	Nonsense_Mutation	G	T	p.E346X
PAAD	TCGA-HZ-8317-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561313	32561313	Nonsense_Mutation	C	T	p.R480X
PAAD	TCGA-HZ-7926-01	ATL1	ENST00000354525.4,ENST00000441560.2	chr14	51089894:51089966:51094748:51095180:51096712:51096727,51089894:51089966:51094748:51095180:51098946:51099038,	51094749	51095180	51094836	51094836	Nonsense_Mutation	C	T	p.R403X
PAAD	TCGA-IB-7646-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249321	45249321	Nonsense_Mutation	G	T	p.C71X
PAAD	TCGA-HV-A7OL-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-HV-A7OL-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-2J-AAB1-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981145	201981145	Nonsense_Mutation	G	A	p.W75X
PAAD	TCGA-IB-AAUO-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24831899	24831899	Nonsense_Mutation	G	T	p.E1234X
PAAD	TCGA-LB-A7SX-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
PAAD	TCGA-LB-A7SX-01	XPR1	ENST00000367590.4,ENST00000367589.3	chr1	180780542:180780624:180793888:180794079:180794300:180794480,	180793889	180794079	180793903	180793903	Nonsense_Mutation	G	T	p.E260X
PAAD	TCGA-2L-AAQE-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579575	7579575	Nonsense_Mutation	G	A	p.Q38X
PAAD	TCGA-IB-7652-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58132546:58132720:58133932:58134091:58134375:58134579,	58133933	58134091	58134060	58134060	Nonsense_Mutation	T	A	p.C1983X
PAAD	TCGA-IB-A5SS-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58X
PAAD	TCGA-IB-A5SS-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58X
PAAD	TCGA-RB-AA9M-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577082	7577082	Nonsense_Mutation	C	A	p.E286X
PAAD	TCGA-HV-A5A3-01	EPB41L3	ENST00000542146.1,ENST00000579271.1	chr18	5397396:5397425:5398019:5398142:5400967:5401042,5397396:5397425:5398019:5398142:5406775:5406967,5397396:5397425:5398019:5398142:5400495:5400594,	5398020	5398142	5398076	5398076	Nonsense_Mutation	G	A	p.R806X
PAAD	TCGA-2J-AABF-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-2J-AABF-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PAAD	TCGA-2J-AABF-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256510	19256510	Nonsense_Mutation	G	A	p.R183X
PAAD	TCGA-IB-8126-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72421429:72421632:72422065:72422186:72422474:72422544,	72422066	72422186	72422096	72422096	Nonsense_Mutation	G	A	p.R395X
PAAD	TCGA-FB-AAPZ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
PAAD	TCGA-FB-AAPZ-01	C5orf34	ENST00000514462.1	chr5	43505849:43506496:43508678:43508768:43514907:43515126,	43508679	43508768	43508741	43508741	Nonsense_Mutation	G	A	p.R75X
PAAD	TCGA-3A-A9I5-01	KIF27	ENST00000413982.1	chr9	86495211:86495409:86498727:86498933:86501955:86502111,86485433:86485547:86498727:86498933:86501955:86502111,	86498728	86498933	86498835	86498835	Nonsense_Mutation	T	A	p.K780X
PAAD	TCGA-IB-8127-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88X
PAAD	TCGA-IB-8127-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88X
PAAD	TCGA-LB-A9Q5-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
PAAD	TCGA-3E-AAAY-01	ABTB2	ENST00000530814.1,ENST00000298992.2,ENST00000435224.2	chr11	34194720:34194854:34218871:34219085:34226090:34226237,	34218872	34219085	34218927	34218927	Nonsense_Mutation	C	A	p.E397X
PAAD	TCGA-3E-AAAY-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294X
PAAD	TCGA-IB-7887-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408064	130408064	Nonsense_Mutation	G	A	p.R1295X
PAAD	TCGA-FB-AAPS-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229269	7229269	Nonsense_Mutation	C	T	p.Q313X
PAAD	TCGA-HZ-8636-01	OSGEP	ENST00000555223.1,ENST00000555656.1,ENST00000206542.4,ENST00000554249.1,ENST00000555785.1	chr14	20915836:20915849:20916062:20916153:20916264:20916330,	20916063	20916153	20916117	20916117	Nonsense_Mutation	G	A	p.R48*
PAAD	TCGA-IB-7888-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
PAAD	TCGA-IB-7888-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229368	7229368	Nonsense_Mutation	G	T	p.E346*
PAAD	TCGA-IB-7888-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229365	7229365	Nonsense_Mutation	C	T	p.Q345*
PAAD	TCGA-IB-7888-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195515980	195515980	Nonsense_Mutation	G	T	p.S824*
PAAD	TCGA-US-A774-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
PAAD	TCGA-IB-8127-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
PAAD	TCGA-IB-8127-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Nonsense_Mutation	C	A	p.E88*
PAAD	TCGA-HZ-7289-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000340834.4,ENST00000446842.2,ENST00000421834.2,ENST00000370769.4	chr6	56392290:56392532:56393638:56393723:56394245:56394572,	56393639	56393723	56393693	56393693	Nonsense_Mutation	G	A	p.Q5845*
PAAD	TCGA-HZ-7289-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000436908.1,ENST00000455112.2,ENST00000448002.2	chr7	102495223:102495307:102517913:102518040:102518777:102518897,	102517914	102518040	102518012	102518012	Nonsense_Mutation	G	A	p.R513*
PAAD	TCGA-IB-7652-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58132546:58132720:58133932:58134091:58134375:58134579,	58133933	58134091	58134060	58134060	Nonsense_Mutation	T	A	p.C1952*
PAAD	TCGA-2L-AAQL-01	EEF2	ENST00000309311.6	chr19	3979326:3979434:3979805:3980064:3980511:3980707,	3979806	3980064	3980040	3980040	Nonsense_Mutation	G	C	p.Y457*
PAAD	TCGA-F2-A44G-01	EEF2	ENST00000309311.6	chr19	3979326:3979434:3979805:3980064:3980511:3980707,	3979806	3980064	3980040	3980040	Nonsense_Mutation	G	T	p.Y457*
PAAD	TCGA-F2-A44G-01	HELQ	ENST00000508591.1,ENST00000295488.3,ENST00000510985.1	chr4	84339245:84339359:84342715:84342889:84347146:84347245,	84342716	84342889	84342813	84342813	Nonsense_Mutation	C	T	p.W951*
PAAD	TCGA-FB-AAPS-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229269	7229269	Nonsense_Mutation	C	T	p.Q313*
PAAD	TCGA-2J-AABV-01	SCN8A	ENST00000550891.1,ENST00000355133.3,ENST00000354534.6,ENST00000545061.1	chr12	52139686:52139819:52145138:52145377:52156286:52156460,	52145139	52145377	52145205	52145205	Nonsense_Mutation	G	A	p.W733*
PAAD	TCGA-HZ-7926-01	ATL1	ENST00000354525.4,ENST00000441560.2	chr14	51089894:51089966:51094748:51095180:51096712:51096727,51089894:51089966:51094748:51095180:51098946:51099038,	51094749	51095180	51094836	51094836	Nonsense_Mutation	C	T	p.R403*
PAAD	TCGA-HV-A7OL-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-HV-A7OL-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-2J-AAB8-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30018984:30019195:30020140:30020223:30024636:30024732,	30020141	30020223	30020212	30020212	Nonsense_Mutation	G	A	p.R677*
PAAD	TCGA-HZ-7919-01	TTLL5	ENST00000554510.1,ENST00000298832.9,ENST00000557636.1,ENST00000556893.1	chr14	76286349:76286504:76330009:76330205:76349027:76349245,	76330010	76330205	76330128	76330128	Nonsense_Mutation	C	T	p.Q1149*
PAAD	TCGA-IB-A5SS-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
PAAD	TCGA-IB-A5SS-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
PAAD	TCGA-LB-A9Q5-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
PAAD	TCGA-IB-7889-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
PAAD	TCGA-IB-7889-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-IB-7889-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-IB-7651-01	PLEKHA7	ENST00000355661.3,ENST00000531066.1,ENST00000448080.2	chr11	16847666:16848137:16863093:16863269:16872737:16872834,	16863094	16863269	16863183	16863183	Nonsense_Mutation	G	T	p.Y261*
PAAD	TCGA-IB-7651-01	ZNF414	ENST00000255616.8	chr19	8577487:8577595:8577912:8578225:8578927:8579032,	8577913	8578225	8578036	8578036	Nonsense_Mutation	G	A	p.Q65*
PAAD	TCGA-IB-7651-01	TNIK	ENST00000538048.1,ENST00000460047.1,ENST00000488470.1,ENST00000284483.8,ENST00000436636.2	chr3	170855979:170856168:170857258:170857345:170858187:170858298,	170857259	170857345	170857333	170857333	Nonsense_Mutation	G	A	p.R449*
PAAD	TCGA-IB-7651-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217586	26217586	Nonsense_Mutation	C	T	p.R87*
PAAD	TCGA-IB-7651-01	PTDSS1	ENST00000517557.1,ENST00000517309.1	chr8	97285526:97285618:97296336:97296381:97299249:97299374,	97296337	97296381	97296348	97296348	Nonsense_Mutation	C	T	p.R95*
PAAD	TCGA-IB-7651-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672574	186672574	Nonsense_Mutation	G	T	p.E6270*
PAAD	TCGA-IB-7651-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832433	24832433	Nonsense_Mutation	C	T	p.Q1095*
PAAD	TCGA-IB-7651-01	ASIC4	ENST00000473709.1,ENST00000474489.1,ENST00000358078.4	chr2	220396722:220396850:220397036:220397199:220399892:220400046,220396722:220396850:220397036:220397199:220397604:220397661,	220397037	220397199	220397076	220397076	Nonsense_Mutation	G	T	p.E426*
PAAD	TCGA-IB-7651-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1,ENST00000523765.1	chr6	112476052:112476149:112476766:112476908:112479933:112480082,	112476767	112476908	112476778	112476778	Nonsense_Mutation	G	A	p.R650*
PAAD	TCGA-IB-7651-01	ZYX	ENST00000449423.2,ENST00000354434.4	chr7	143078667:143078872:143079340:143079540:143079685:143079769,143078667:143078872:143079340:143079540:143079893:143080018,	143079341	143079540	143079460	143079460	Nonsense_Mutation	G	T	p.E110*
PAAD	TCGA-IB-7651-01	ZYX	ENST00000468083.1	chr7	143078667:143078872:143079340:143079778:143079893:143080018,	143079341	143079778	143079460	143079460	Nonsense_Mutation	G	T	p.E110*
PAAD	TCGA-IB-7651-01	RARS2	ENST00000369536.5	chr6	88228541:88228609:88229300:88229425:88229897:88229970,	88229301	88229425	88229394	88229394	Nonsense_Mutation	C	A	p.G382*
PAAD	TCGA-IB-7651-01	PLEKHA7	ENST00000525581.1,ENST00000531079.1,ENST00000355661.3,ENST00000525049.1,ENST00000530489.1,ENST00000525781.1,ENST00000531066.1,ENST00000448080.2	chr11	16822571:16822622:16823214:16823364:16824518:16824599,	16823215	16823364	16823313	16823313	Nonsense_Mutation	G	A	p.R737*
PAAD	TCGA-IB-7651-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263600	1263600	Nonsense_Mutation	C	A	p.C1833*
PAAD	TCGA-IB-7651-01	PHKG1	ENST00000537360.1,ENST00000395428.2	chr7	56151342:56151408:56155290:56155469:56156551:56156668,	56155291	56155469	56155447	56155447	Nonsense_Mutation	G	A	p.R36*
PAAD	TCGA-IB-7651-01	EPS8L1	ENST00000540810.1	chr19	55589460:55589496:55591057:55591219:55591496:55591551,55587775:55587829:55591057:55591219:55591496:55591551,	55591058	55591219	55591075	55591075	Nonsense_Mutation	C	A	p.C45*
PAAD	TCGA-IB-7651-01	MROH8	ENST00000217333.8,ENST00000417458.1,ENST00000343811.4,ENST00000400441.3	chr20	35737001:35737067:35738658:35738758:35740726:35740849,	35738659	35738758	35738747	35738747	Nonsense_Mutation	G	A	p.Q929*
PAAD	TCGA-IB-7651-01	ABHD6	ENST00000295962.4,ENST00000478253.1	chr3	58256658:58256791:58260384:58260542:58270811:58270866,	58260385	58260542	58260429	58260429	Nonsense_Mutation	G	T	p.E190*
PAAD	TCGA-IB-7651-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926559	1926559	Nonsense_Mutation	C	A	p.E328*
PAAD	TCGA-IB-7651-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926559	1926559	Nonsense_Mutation	C	A	p.E328*
PAAD	TCGA-IB-7651-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67645871	67645871	Nonsense_Mutation	C	T	p.Q267*
PAAD	TCGA-IB-7651-01	NEK8	ENST00000268766.6	chr17	27066101:27066219:27067480:27067631:27067839:27068003,	27067481	27067631	27067558	27067558	Nonsense_Mutation	C	T	p.R499*
PAAD	TCGA-IB-7651-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47537787:47537850:47538527:47538590:47538943:47539033,	47538528	47538590	47538546	47538546	Nonsense_Mutation	G	T	p.G379*
PAAD	TCGA-IB-7651-01	TBRG4	ENST00000478532.1	chr7	45145039:45145363:45148530:45148886:45151262:45151307,	45148531	45148886	45148815	45148815	Nonsense_Mutation	G	A	p.R8*
PAAD	TCGA-IB-7651-01	TBRG4	ENST00000361278.3	chr7	45145039:45145363:45148425:45148886:45151262:45151307,45145039:45145363:45148425:45148886:45151241:45151279,	45148426	45148886	45148815	45148815	Nonsense_Mutation	G	A	p.R8*
PAAD	TCGA-IB-7651-01	TBRG4	ENST00000494076.1	chr7	45145039:45145363:45148425:45148842:45151241:45151279,	45148426	45148842	45148815	45148815	Nonsense_Mutation	G	A	p.R8*
PAAD	TCGA-IB-7651-01	SCG3	ENST00000542355.2,ENST00000220478.3	chr15	51975275:51975321:51975415:51975631:51980456:51980599,	51975416	51975631	51975574	51975574	Nonsense_Mutation	C	T	p.R114*
PAAD	TCGA-IB-7651-01	TRAFD1	ENST00000257604.5,ENST00000412615.2	chr12	112578622:112579028:112579892:112580099:112583389:112583466,	112579893	112580099	112579955	112579955	Nonsense_Mutation	G	T	p.E236*
PAAD	TCGA-IB-7651-01	ZNF609	ENST00000326648.3	chr15	64915025:64915251:64962544:64962632:64966114:64966970,	64962545	64962632	64962610	64962610	Nonsense_Mutation	C	T	p.R347*
PAAD	TCGA-IB-7651-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144996821	144996821	Nonsense_Mutation	C	A	p.E2563*
PAAD	TCGA-IB-7651-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4	chr2	24531485:24531625:24533152:24533249:24533357:24533561,	24533153	24533249	24533163	24533163	Nonsense_Mutation	C	A	p.G215*
PAAD	TCGA-IB-7651-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078761	117078761	Nonsense_Mutation	G	A	p.R152*
PAAD	TCGA-IB-7651-01	ECM2	ENST00000344604.5	chr9	95274292:95274408:95276912:95277485:95279968:95280157,	95276913	95277485	95277420	95277420	Nonsense_Mutation	C	A	p.E183*
PAAD	TCGA-IB-7651-01	SPATA13	ENST00000382108.3,ENST00000424834.2,ENST00000343003.6,ENST00000399949.2,ENST00000382095.4	chr13	24860351:24860531:24860902:24861088:24863136:24863316,	24860903	24861088	24860906	24860906	Nonsense_Mutation	C	T	p.R829*
PAAD	TCGA-IB-7651-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911640	74911640	Nonsense_Mutation	C	T	p.R183*
PAAD	TCGA-IB-7651-01	SPARCL1	ENST00000282470.6,ENST00000503414.1,ENST00000418378.1	chr4	88394569:88394955:88400581:88400730:88401523:88401672,	88400582	88400730	88400699	88400699	Nonsense_Mutation	G	A	p.R617*
PAAD	TCGA-IB-7651-01	PPP2R5C	ENST00000556218.1	chr14	102360843:102360897:102368055:102368226:102372738:102372866,102360843:102360897:102368055:102368226:102375925:102376027,	102368056	102368226	102368104	102368104	Nonsense_Mutation	G	T	p.E332*
PAAD	TCGA-IB-7651-01	SEC31A	ENST00000513858.1,ENST00000348405.4,ENST00000500777.2,ENST00000326950.5,ENST00000512664.1,ENST00000505984.1,ENST00000264405.5	chr4	83778841:83778917:83784470:83784545:83785514:83785608,	83784471	83784545	83784500	83784500	Nonsense_Mutation	C	A	p.G494*
PAAD	TCGA-IB-7651-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214815450	214815450	Nonsense_Mutation	G	T	p.E1257*
PAAD	TCGA-IB-7651-01	HSD17B11	ENST00000502576.1,ENST00000512344.1,ENST00000507518.1,ENST00000507286.1,ENST00000358290.4	chr4	88258426:88258518:88261641:88261758:88278430:88278568,	88261642	88261758	88261694	88261694	Nonsense_Mutation	G	A	p.Q254*
PAAD	TCGA-IB-7651-01	CBFA2T2	ENST00000397798.2,ENST00000492345.1,ENST00000346541.3,ENST00000344201.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32194761:32194905:32198899:32199141:32207322:32207412,	32198900	32199141	32199034	32199034	Nonsense_Mutation	C	T	p.R114*
PAAD	TCGA-IB-7651-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42862295:42862459:42862938:42863106:42863249:42863394,	42862939	42863106	42863068	42863068	Nonsense_Mutation	G	T	p.G1702*
PAAD	TCGA-IB-7651-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548540	212548540	Nonsense_Mutation	G	A	p.Q296*
PAAD	TCGA-IB-7651-01	RASGRP1	ENST00000557875.1	chr15	38786652:38786968:38790994:38791385:38792303:38792340,	38790995	38791385	38791016	38791016	Nonsense_Mutation	C	A	p.G618*
PAAD	TCGA-IB-7651-01	RASGRP1	ENST00000559830.1	chr15	38786652:38786968:38790994:38791147:38792303:38792340,38782754:38782889:38790994:38791147:38792303:38792340,	38790995	38791147	38791016	38791016	Nonsense_Mutation	C	A	p.G618*
PAAD	TCGA-IB-7651-01	BTAF1	ENST00000265990.6	chr10	93711159:93711323:93713493:93713630:93716284:93716414,	93713494	93713630	93713536	93713536	Nonsense_Mutation	G	T	p.G203*
PAAD	TCGA-IB-7651-01	PAPSS1	ENST00000514489.1,ENST00000502431.1,ENST00000265174.4	chr4	108608284:108608333:108614926:108615162:108622326:108622441,	108614927	108615162	108615089	108615089	Nonsense_Mutation	G	T	p.C83*
PAAD	TCGA-IB-7651-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000426233.1,ENST00000540518.1,ENST00000236959.9	chr2	216209501:216209594:216211481:216211664:216213816:216213972,	216211482	216211664	216211553	216211553	Nonsense_Mutation	T	G	p.Y463*
PAAD	TCGA-IB-7651-01	MSH6	ENST00000445503.1	chr2	48010308:48010632:48018065:48018262:48023032:48023175,48010308:48010632:48018065:48018262:48025749:48025766,	48018066	48018262	48018178	48018178	Nonsense_Mutation	A	T	p.K125*
PAAD	TCGA-IB-7651-01	WSCD1	ENST00000574946.1,ENST00000317744.5,ENST00000574232.1,ENST00000539421.1	chr17	5984063:5984405:5991309:5991424:5993640:5993825,	5991310	5991424	5991326	5991326	Nonsense_Mutation	C	A	p.C148*
PAAD	TCGA-IB-7651-01	DYNC1LI1	ENST00000432458.2,ENST00000273130.4,ENST00000472985.1	chr3	32571952:32572012:32574477:32574589:32576002:32576138,	32574478	32574589	32574558	32574558	Nonsense_Mutation	C	A	p.G334*
PAAD	TCGA-IB-7651-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000342579.3,ENST00000321892.4,ENST00000578307.1	chr17	65962687:65962772:65971887:65972074:65977551:65977878,65962687:65962772:65971887:65972074:65978367:65978404,	65971888	65972074	65971920	65971920	Nonsense_Mutation	C	T	p.R2984*
PAAD	TCGA-IB-7651-01	CD1B	ENST00000368168.3	chr1	158299324:158299438:158299641:158299920:158300585:158300815,	158299642	158299920	158299849	158299849	Nonsense_Mutation	C	A	p.G134*
PAAD	TCGA-IB-7651-01	LACTB2	ENST00000276590.4,ENST00000522447.1	chr8	71550785:71550864:71553136:71553285:71556299:71556363,	71553137	71553285	71553220	71553220	Nonsense_Mutation	G	A	p.R220*
PAAD	TCGA-IB-7651-01	SLC35A3	ENST00000370153.1,ENST00000533028.1,ENST00000427993.2,ENST00000370156.3,ENST00000465289.1,ENST00000370155.3,ENST00000422078.1	chr1	100464816:100464971:100472589:100472712:100476920:100477089,	100472590	100472712	100472710	100472710	Nonsense_Mutation	C	T	p.Q155*
PAAD	TCGA-IB-7651-01	SEMA5A	ENST00000382496.5	chr5	9337824:9337924:9379934:9380135:9437867:9437964,	9379935	9380135	9380032	9380032	Nonsense_Mutation	C	T	p.W9*
PAAD	TCGA-IB-7651-01	OCIAD1	ENST00000506801.1,ENST00000509246.1	chr4	48835417:48835498:48844652:48844706:48850415:48850427,48833243:48833266:48844652:48844706:48850415:48850427,	48844653	48844706	48844691	48844691	Nonsense_Mutation	G	T	p.G60*
PAAD	TCGA-IB-7651-01	VWA3B	ENST00000416277.1,ENST00000433678.1,ENST00000409460.1,ENST00000477737.1,ENST00000432242.1,ENST00000435344.1,ENST00000422503.2,ENST00000451075.2	chr2	98744701:98744871:98750286:98750402:98779313:98779439,	98750287	98750402	98750321	98750321	Nonsense_Mutation	G	T	p.E303*
PAAD	TCGA-IB-7651-01	POLL	ENST00000456836.2	chr10	103343358:103343438:103347002:103347163:103347960:103347976,103345618:103345913:103347002:103347163:103347641:103347966,103344634:103344676:103347002:103347163:103347960:103347976,	103347003	103347163	103347012	103347012	Nonsense_Mutation	C	A	p.E36*
PAAD	TCGA-IB-7651-01	POLL	ENST00000413344.1	chr10	103345622:103345913:103347002:103347139:103347960:103347976,	103347003	103347139	103347012	103347012	Nonsense_Mutation	C	A	p.E36*
PAAD	TCGA-IB-7651-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79402957:79403118:79403541:79403689:79410028:79410234,	79403542	79403689	79403572	79403572	Nonsense_Mutation	C	T	p.Q2879*
PAAD	TCGA-IB-7651-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599117.1,ENST00000598725.1	chr19	39950531:39950600:39955437:39955689:39957119:39957209,	39955438	39955689	39955444	39955444	Nonsense_Mutation	C	T	p.Q211*
PAAD	TCGA-IB-7651-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660200	77660200	Nonsense_Mutation	C	T	p.R292*
PAAD	TCGA-IB-7651-01	ZMPSTE24	ENST00000372759.3	chr1	40737565:40737707:40747014:40747199:40751596:40751701,	40747015	40747199	40747106	40747106	Nonsense_Mutation	C	A	p.Y287*
PAAD	TCGA-IB-7651-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149248116	149248116	Nonsense_Mutation	G	T	p.E1406*
PAAD	TCGA-IB-7651-01	SAMHD1	ENST00000262878.4	chr20	35559162:35559278:35563431:35563592:35569441:35569514,	35563432	35563592	35563508	35563508	Nonsense_Mutation	G	A	p.R145*
PAAD	TCGA-IB-7651-01	VNN3	ENST00000414302.2	chr6	133046059:133046118:133047860:133048151:133049879:133050072,133046059:133046118:133047860:133048151:133055391:133055472,	133047861	133048151	133047932	133047932	Nonsense_Mutation	G	A	p.Q253*
PAAD	TCGA-IB-7651-01	VNN3	ENST00000519686.2,ENST00000392393.3	chr6	133046059:133046118:133047860:133047977:133055391:133055472,133046059:133046118:133047860:133047977:133049879:133050072,	133047861	133047977	133047932	133047932	Nonsense_Mutation	G	A	p.Q253*
PAAD	TCGA-IB-7651-01	SEH1L	ENST00000587761.1,ENST00000399892.2,ENST00000588251.1,ENST00000262124.11	chr18	12948137:12948231:12955461:12955608:12963158:12963370,12951853:12951904:12955461:12955608:12963158:12963370,	12955462	12955608	12955494	12955494	Nonsense_Mutation	G	A	p.W65*
PAAD	TCGA-IB-7651-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560065	32560065	Nonsense_Mutation	G	T	p.G64*
PAAD	TCGA-IB-7651-01	LYVE1	ENST00000531706.1,ENST00000256178.3,ENST00000438354.2	chr11	10581362:10581441:10582041:10582347:10585486:10585626,	10582042	10582347	10582264	10582264	Nonsense_Mutation	C	A	p.E161*
PAAD	TCGA-IB-7651-01	ZNF90	ENST00000418063.2,ENST00000473524.1	chr19	20188845:20188944:20215047:20215174:20216029:20216125,	20215048	20215174	20215098	20215098	Nonsense_Mutation	G	A	p.W18*
PAAD	TCGA-IB-7651-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475213	32475213	Nonsense_Mutation	C	A	p.E574*
PAAD	TCGA-IB-7651-01	CACHD1	ENST00000495994.1,ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65124387:65124556:65129377:65129520:65130180:65130362,	65129378	65129520	65129424	65129424	Nonsense_Mutation	T	G	p.Y666*
PAAD	TCGA-IB-7651-01	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000498422.1,ENST00000469153.1	chr3	63821976:63822034:63823651:63823738:63824047:63824175,	63823652	63823738	63823667	63823667	Nonsense_Mutation	G	A	p.R113*
PAAD	TCGA-IB-7651-01	WDSUB1	ENST00000358147.4	chr2	160104882:160105023:160112706:160112886:160132056:160132149,	160112707	160112886	160112844	160112844	Nonsense_Mutation	C	T	p.W332*
PAAD	TCGA-IB-7651-01	RAB8A	ENST00000300935.3,ENST00000586682.1,ENST00000589697.1,ENST00000587156.1	chr19	16229035:16229096:16232559:16232620:16236279:16236357,	16232560	16232620	16232605	16232605	Nonsense_Mutation	C	A	p.Y77*
PAAD	TCGA-IB-7651-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289171	31289171	Nonsense_Mutation	G	A	p.W644*
PAAD	TCGA-IB-7651-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000341723.4	chr7	92826797:92826923:92837892:92838189:92844713:92844998,	92837893	92838189	92838007	92838007	Nonsense_Mutation	C	A	p.E300*
PAAD	TCGA-IB-7651-01	FRYL	ENST00000512810.1,ENST00000264319.7,ENST00000503339.1,ENST00000507873.2	chr4	48502046:48502237:48503639:48503750:48507563:48507632,	48503640	48503750	48503735	48503735	Nonsense_Mutation	G	A	p.R2833*
PAAD	TCGA-IB-7651-01	MYRIP	ENST00000302541.6,ENST00000396217.3,ENST00000539167.1,ENST00000459828.1,ENST00000458441.1,ENST00000444716.1	chr3	40251344:40251584:40275349:40275544:40285936:40286098,	40275350	40275544	40275428	40275428	Nonsense_Mutation	G	T	p.G662*
PAAD	TCGA-IB-7651-01	MYRIP	ENST00000458292.1	chr3	40251344:40251584:40275386:40275544:40285936:40286098,	40275387	40275544	40275428	40275428	Nonsense_Mutation	G	T	p.G662*
PAAD	TCGA-IB-7651-01	BTBD7	ENST00000554565.1	chr14	93727947:93728023:93730130:93730339:93760203:93760274,93727947:93728023:93730130:93730339:93799165:93799367,	93730131	93730339	93730244	93730244	Nonsense_Mutation	G	A	p.R420*
PAAD	TCGA-IB-7651-01	SGCE	ENST00000437425.2	chr7	94252639:94252709:94257513:94257671:94285301:94285410,	94257514	94257671	94257604	94257604	Nonsense_Mutation	C	T	p.W136*
PAAD	TCGA-IB-7651-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000413211.1,ENST00000360817.5,ENST00000403949.1,ENST00000423384.1,ENST00000443875.1	chr12	7169142:7169221:7169778:7169986:7170193:7170282,	7169779	7169986	7169900	7169900	Nonsense_Mutation	G	T	p.E43*
PAAD	TCGA-IB-7651-01	EFCAB7	ENST00000461039.1,ENST00000460678.2,ENST00000371088.4	chr1	64022784:64022918:64027379:64027528:64033980:64034190,	64027380	64027528	64027454	64027454	Nonsense_Mutation	C	T	p.R475*
PAAD	TCGA-IB-7651-01	MSH3	ENST00000265081.6	chr5	80063751:80063939:80064653:80064822:80071512:80071577,	80064654	80064822	80064769	80064769	Nonsense_Mutation	C	T	p.R734*
PAAD	TCGA-IB-7651-01	FHL3	ENST00000475084.1	chr1	38463016:38463231:38463355:38463542:38464645:38464820,	38463356	38463542	38463501	38463501	Nonsense_Mutation	C	T	p.W181*
PAAD	TCGA-IB-7651-01	KLKB1	ENST00000511608.1,ENST00000264690.6,ENST00000511406.1	chr4	187177145:187177241:187178379:187178519:187179174:187179446,	187178380	187178519	187178451	187178451	Nonsense_Mutation	C	T	p.Q553*
PAAD	TCGA-IB-7651-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133827072	133827072	Nonsense_Mutation	T	G	p.L374*
PAAD	TCGA-IB-7651-01	ZNF254	ENST00000594886.1,ENST00000595187.1,ENST00000357002.4	chr19	24288741:24288868:24289349:24289445:24309055:24309122,	24289350	24289445	24289407	24289407	Nonsense_Mutation	G	A	p.W72*
PAAD	TCGA-IB-7651-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476155	32476155	Nonsense_Mutation	C	A	p.E260*
PAAD	TCGA-IB-7651-01	SNRK	ENST00000429705.2	chr3	43328077:43328167:43344589:43345284:43373660:43373802,	43344590	43345284	43344702	43344702	Nonsense_Mutation	G	T	p.G3*
PAAD	TCGA-IB-7651-01	PCK2	ENST00000396973.4,ENST00000216780.4	chr14	24563974:24564054:24566100:24566346:24567411:24567437,24563565:24563643:24566100:24566346:24567411:24567437,	24566101	24566346	24566204	24566204	Nonsense_Mutation	C	T	p.R45*
PAAD	TCGA-IB-7651-01	CD3E	ENST00000361763.4,ENST00000526146.1,ENST00000528435.1,ENST00000529713.1	chr11	118178002:118178023:118179141:118179156:118182867:118182885,	118179142	118179156	118179150	118179150	Nonsense_Mutation	G	T	p.E27*
PAAD	TCGA-IB-7651-01	SLC17A2	ENST00000360488.3	chr6	25914807:25914898:25915963:25916096:25916912:25917074,	25915964	25916096	25915985	25915985	Nonsense_Mutation	G	A	p.R348*
PAAD	TCGA-IB-7651-01	SMARCAD1	ENST00000457823.2,ENST00000394961.2,ENST00000509418.1,ENST00000359052.4,ENST00000354268.4	chr4	95202622:95202741:95204271:95204454:95206110:95206220,	95204272	95204454	95204434	95204434	Nonsense_Mutation	C	A	p.C963*
PAAD	TCGA-IB-7651-01	CNTN3	ENST00000263665.6	chr3	74414716:74414853:74418339:74418524:74419039:74419142,	74418340	74418524	74418379	74418379	Nonsense_Mutation	G	A	p.R303*
PAAD	TCGA-IB-7651-01	STRC	ENST00000440125.1,ENST00000450892.2,ENST00000541030.1,ENST00000455136.1	chr15	43896901:43897044:43897461:43897597:43900060:43900173,	43897462	43897597	43897593	43897593	Nonsense_Mutation	G	A	p.Q1267*
PAAD	TCGA-IB-7651-01	ANKZF1	ENST00000410034.3,ENST00000409849.1,ENST00000323348.5,ENST00000477479.1	chr2	220099553:220100034:220100195:220100307:220100429:220100523,	220100196	220100307	220100257	220100257	Nonsense_Mutation	C	T	p.R585*
PAAD	TCGA-IB-7651-01	NMT2	ENST00000540259.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15154794:15154962:15161341:15161512:15170348:15170457,	15161342	15161512	15161458	15161458	Nonsense_Mutation	G	A	p.R352*
PAAD	TCGA-IB-7651-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406463	91406463	Nonsense_Mutation	C	A	p.E150*
PAAD	TCGA-IB-7651-01	ZC3H7B	ENST00000352645.4,ENST00000351589.4,ENST00000486331.1	chr22	41721724:41721922:41723209:41723368:41726026:41726107,	41723210	41723368	41723231	41723231	Nonsense_Mutation	G	T	p.E103*
PAAD	TCGA-IB-7651-01	WDHD1	ENST00000420358.2,ENST00000360586.3,ENST00000421192.1	chr14	55453936:55454105:55455745:55455930:55457930:55458100,	55455746	55455930	55455901	55455901	Nonsense_Mutation	G	T	p.C457*
PAAD	TCGA-IB-7651-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383227	109383227	Nonsense_Mutation	G	T	p.E2078*
PAAD	TCGA-IB-7651-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100029193	100029193	Nonsense_Mutation	C	T	p.R518*
PAAD	TCGA-IB-7651-01	TANC1	ENST00000454300.1	chr2	160006880:160007067:160019793:160020057:160025760:160025862,159992709:159992809:160019793:160020057:160025760:160025862,	160019794	160020057	160019849	160019849	Nonsense_Mutation	G	A	p.W246*
PAAD	TCGA-IB-7651-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33626461:33626605:33626797:33626896:33627242:33627326,	33626798	33626896	33626894	33626894	Nonsense_Mutation	G	T	p.E209*
PAAD	TCGA-IB-7651-01	NFATC2	ENST00000609943.1,ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000396009.3,ENST00000610033.1	chr20	50052242:50052298:50071084:50071225:50090516:50090689,	50071085	50071225	50071220	50071220	Nonsense_Mutation	G	A	p.R572*
PAAD	TCGA-IB-7651-01	HMGCR	ENST00000511206.1,ENST00000343975.5,ENST00000287936.4	chr5	74654994:74655135:74655222:74655381:74655809:74655964,	74655223	74655381	74655331	74655331	Nonsense_Mutation	G	T	p.G803*
PAAD	TCGA-IB-7651-01	AEBP1	ENST00000223357.3,ENST00000455443.1	chr7	44147607:44147683:44148497:44148575:44148705:44148761,	44148498	44148575	44148560	44148560	Nonsense_Mutation	G	T	p.E335*
PAAD	TCGA-IB-7651-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95918455:95918564:95922582:95922778:95926604:95928102,	95922583	95922778	95922698	95922698	Nonsense_Mutation	A	C	p.Y503*
PAAD	TCGA-IB-7651-01	PCK2	ENST00000560106.1,ENST00000559250.1,ENST00000560736.1,ENST00000559837.1,ENST00000561050.1,ENST00000396973.4,ENST00000545054.2,ENST00000558096.1,ENST00000216780.4	chr14	24566100:24566346:24567411:24567596:24567683:24567800,	24567412	24567596	24567497	24567497	Nonsense_Mutation	C	T	p.Q121*
PAAD	TCGA-IB-7651-01	PLXDC2	ENST00000377238.2,ENST00000377242.3,ENST00000377252.4	chr10	20357098:20357168:20432223:20432346:20436712:20436831,	20432224	20432346	20432253	20432253	Nonsense_Mutation	C	T	p.R191*
PAAD	TCGA-IB-7651-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290277	132290277	Nonsense_Mutation	C	T	p.R267*
PAAD	TCGA-IB-7651-01	SREBF1	ENST00000395751.4,ENST00000469356.3	chr17	17720569:17720771:17720861:17720905:17721009:17721214,	17720862	17720905	17720902	17720902	Nonsense_Mutation	C	A	p.E470*
PAAD	TCGA-IB-7651-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8228996	8228996	Nonsense_Mutation	G	A	p.W449*
PAAD	TCGA-IB-7651-01	OAT	ENST00000368845.5	chr10	126097461:126097534:126100541:126100769:126107441:126107505,	126100542	126100769	126100554	126100554	Nonsense_Mutation	C	A	p.E63*
PAAD	TCGA-IB-7651-01	MCM6	ENST00000264156.2	chr2	136597195:136598521:136602114:136602254:136603806:136603962,	136602115	136602254	136602208	136602208	Nonsense_Mutation	G	T	p.Y752*
PAAD	TCGA-IB-7651-01	CERS4	ENST00000595722.1,ENST00000559450.1,ENST00000558331.1,ENST00000251363.5,ENST00000558501.1,ENST00000557925.1,ENST00000559336.1	chr19	8321119:8321170:8321501:8321594:8321832:8321961,	8321502	8321594	8321538	8321538	Nonsense_Mutation	G	T	p.E135*
PAAD	TCGA-IB-7651-01	MS4A1	ENST00000527101.1,ENST00000533306.1	chr11	60229657:60229771:60229890:60230006:60230474:60230594,	60229891	60230006	60229917	60229917	Nonsense_Mutation	C	T	p.Q24*
PAAD	TCGA-IB-7651-01	CHPF2	ENST00000495645.1	chr7	150929574:150929900:150931171:150931360:150932133:150932234,	150931172	150931360	150931242	150931242	Nonsense_Mutation	C	T	p.R49*
PAAD	TCGA-IB-7651-01	ZFYVE16	ENST00000338008.5,ENST00000512558.1,ENST00000505560.1,ENST00000510158.1	chr5	79741081:79741224:79743844:79744223:79745409:79745532,	79743845	79744223	79743884	79743884	Nonsense_Mutation	G	T	p.E922*
PAAD	TCGA-IB-7651-01	MFF	ENST00000337110.7,ENST00000304593.9,ENST00000354503.6,ENST00000349901.7	chr2	228190158:228190258:228195341:228195562:228197134:228197215,228190080:228190143:228195341:228195562:228197134:228197215,228194321:228194499:228195341:228195562:228197134:228197215,228193393:228193505:228195341:228195562:228197134:228197215,	228195342	228195562	228195439	228195439	Nonsense_Mutation	C	T	p.R46*
PAAD	TCGA-IB-7651-01	MFF	ENST00000460756.1	chr2	228190080:228190143:228193393:228195562:228197134:228197215,	228193394	228195562	228195439	228195439	Nonsense_Mutation	C	T	p.R46*
PAAD	TCGA-IB-7651-01	MFF	ENST00000489696.1	chr2	228193393:228193505:228195310:228195562:228197134:228197215,	228195311	228195562	228195439	228195439	Nonsense_Mutation	C	T	p.R46*
PAAD	TCGA-IB-7651-01	LMBR1	ENST00000434503.1,ENST00000448926.1,ENST00000540390.1,ENST00000359422.4,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156554827:156554892:156555801:156555870:156556362:156556489,	156555802	156555870	156555863	156555863	Nonsense_Mutation	C	T	p.W186*
PAAD	TCGA-IB-7651-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000505285.1,ENST00000296702.5	chr5	145872482:145872601:145878098:145878249:145882937:145883102,	145878099	145878249	145878172	145878172	Nonsense_Mutation	C	T	p.R769*
PAAD	TCGA-IB-7651-01	NCAPD2	ENST00000539714.1,ENST00000315579.5	chr12	6604241:6604391:6618882:6618958:6619794:6619886,6604241:6604391:6618882:6618958:6619240:6619299,	6618883	6618958	6618917	6618917	Nonsense_Mutation	G	A	p.W29*
PAAD	TCGA-IB-7651-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000534140.1,ENST00000527898.1,ENST00000532517.1,ENST00000534672.1,ENST00000528594.1,ENST00000524713.1,ENST00000526537.1,ENST00000525698.1,ENST00000361417.2	chr11	118520781:118520898:118521149:118521252:118526314:118526400,	118521150	118521252	118521155	118521155	Nonsense_Mutation	C	A	p.C1259*
PAAD	TCGA-IB-7651-01	STRIP1	ENST00000369796.1,ENST00000369795.3	chr1	110581793:110581928:110582016:110582137:110583256:110583325,	110582017	110582137	110582130	110582130	Nonsense_Mutation	G	T	p.E192*
PAAD	TCGA-IB-7651-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377222	77377222	Nonsense_Mutation	C	T	p.W1455*
PAAD	TCGA-IB-7651-01	CD300A	ENST00000582319.1	chr17	72473574:72473669:72477427:72477972:72480139:72480306,	72477428	72477972	72477915	72477915	Nonsense_Mutation	G	A	p.W239*
PAAD	TCGA-IB-7651-01	CD300A	ENST00000577511.1,ENST00000361933.3,ENST00000310828.5,ENST00000360141.3	chr17	72477427:72477465:72477864:72477972:72480139:72480306,	72477865	72477972	72477915	72477915	Nonsense_Mutation	G	A	p.W239*
PAAD	TCGA-IB-7651-01	EFCAB5	ENST00000378738.3,ENST00000440741.3	chr17	28384693:28384908:28386562:28386719:28400100:28400144,	28386563	28386719	28386587	28386587	Nonsense_Mutation	C	T	p.R869*
PAAD	TCGA-IB-7651-01	B3GALNT2	ENST00000494378.1,ENST00000478199.2	chr1	235643419:235643465:235647637:235647831:235657990:235658138,	235647638	235647831	235647766	235647766	Nonsense_Mutation	G	A	p.R143*
PAAD	TCGA-IB-7651-01	NAP1L1	ENST00000393263.3,ENST00000552147.1,ENST00000552013.1	chr12	76441413:76441498:76442172:76442244:76442979:76443030,	76442173	76442244	76442238	76442238	Nonsense_Mutation	G	A	p.Q383*
PAAD	TCGA-IB-7651-01	NAP1L1	ENST00000552056.1	chr12	76441413:76441498:76442200:76442244:76442979:76443030,	76442201	76442244	76442238	76442238	Nonsense_Mutation	G	A	p.Q383*
PAAD	TCGA-IB-7651-01	ELP6	ENST00000449409.1,ENST00000296149.4,ENST00000414236.1,ENST00000444760.1,ENST00000412761.1,ENST00000439305.1,ENST00000461208.1,ENST00000425291.1	chr3	47543205:47543341:47545819:47545938:47551673:47551744,	47545820	47545938	47545887	47545887	Nonsense_Mutation	C	A	p.G86*
PAAD	TCGA-IB-7651-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43692241:43692419:43693913:43694048:43695880:43695997,	43693914	43694048	43693986	43693986	Nonsense_Mutation	C	T	p.R557*
PAAD	TCGA-IB-7651-01	SHROOM1	ENST00000378679.3,ENST00000319854.3	chr5	132159972:132160111:132160306:132160513:132160709:132160765,	132160307	132160513	132160428	132160428	Nonsense_Mutation	C	A	p.E374*
PAAD	TCGA-IB-7651-01	SULT1A2	ENST00000526384.1,ENST00000534108.1,ENST00000395630.1,ENST00000335715.4	chr16	28604590:28604667:28604762:28604889:28606687:28606785,	28604763	28604889	28604766	28604766	Nonsense_Mutation	C	A	p.E166*
PAAD	TCGA-IB-7651-01	GNAQ	ENST00000286548.4,ENST00000397476.3	chr9	80409378:80409508:80412435:80412564:80430531:80430686,	80412436	80412564	80412494	80412494	Nonsense_Mutation	G	A	p.R183*
PAAD	TCGA-IB-7651-01	STMN1	ENST00000446334.1,ENST00000357865.2,ENST00000399728.1,ENST00000455785.2,ENST00000374291.1,ENST00000426559.2	chr1	26228102:26228173:26230131:26230304:26231154:26231229,	26230132	26230304	26230290	26230290	Nonsense_Mutation	C	A	p.E10*
PAAD	TCGA-IB-7651-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677775	88677775	Nonsense_Mutation	C	T	p.R436*
PAAD	TCGA-IB-7651-01	TRA2A	ENST00000474586.1,ENST00000490942.1,ENST00000538367.1,ENST00000494255.1,ENST00000297071.4,ENST00000392502.4	chr7	23552643:23552701:23555981:23556147:23561325:23561459,	23555982	23556147	23556038	23556038	Nonsense_Mutation	G	A	p.R94*
PAAD	TCGA-IB-7651-01	CNBP	ENST00000500450.2	chr3	128890288:128890381:128890497:128890614:128902618:128902707,128890288:128890351:128890497:128890614:128902618:128902707,	128890498	128890614	128890570	128890570	Nonsense_Mutation	G	A	p.R11*
PAAD	TCGA-IB-7651-01	CNBP	ENST00000504813.1	chr3	128890288:128890381:128890476:128890614:128902618:128902707,128890288:128890351:128890476:128890614:128902618:128902707,	128890477	128890614	128890570	128890570	Nonsense_Mutation	G	A	p.R11*
PAAD	TCGA-IB-7651-01	CNBP	ENST00000512338.1	chr3	128890288:128890381:128890494:128890614:128902618:128902707,	128890495	128890614	128890570	128890570	Nonsense_Mutation	G	A	p.R11*
PAAD	TCGA-IB-7651-01	ADAP2	ENST00000580526.1	chr17	29248934:29249126:29249957:29250088:29258906:29258986,	29249958	29250088	29250056	29250056	Nonsense_Mutation	C	T	p.R65*
PAAD	TCGA-IB-7651-01	ING5	ENST00000492488.1,ENST00000482774.1,ENST00000406941.1,ENST00000313552.6,ENST00000489509.1	chr2	242648630:242648797:242650791:242650903:242651392:242651486,	242650792	242650903	242650891	242650891	Nonsense_Mutation	C	T	p.R126*
PAAD	TCGA-IB-7651-01	TMEM39A	ENST00000490099.1,ENST00000319172.5,ENST00000468676.1,ENST00000486235.1	chr3	119165865:119166019:119171293:119171377:119176864:119176930,	119171294	119171377	119171296	119171296	Nonsense_Mutation	C	A	p.E140*
PAAD	TCGA-IB-7651-01	DDOST	ENST00000375048.3	chr1	20982593:20982680:20987373:20987484:20987689:20987862,	20987374	20987484	20987419	20987419	Nonsense_Mutation	C	A	p.E91*
PAAD	TCGA-IB-7651-01	CDC42BPG	ENST00000342711.5	chr11	64597665:64597728:64598976:64599193:64599899:64599954,	64598977	64599193	64599088	64599088	Nonsense_Mutation	G	A	p.Q1065*
PAAD	TCGA-IB-7651-01	DAB2	ENST00000320816.6	chr5	39381555:39381718:39382719:39383373:39388406:39388469,	39382720	39383373	39382969	39382969	Nonsense_Mutation	C	T	p.W364*
PAAD	TCGA-IB-7651-01	THG1L	ENST00000231198.7	chr5	157159875:157160052:157161583:157161753:157162853:157162942,	157161584	157161753	157161741	157161741	Nonsense_Mutation	C	T	p.R176*
PAAD	TCGA-IB-7651-01	THG1L	ENST00000521655.1	chr5	157159875:157160052:157161678:157161753:157162853:157162942,	157161679	157161753	157161741	157161741	Nonsense_Mutation	C	T	p.R176*
PAAD	TCGA-IB-7651-01	DECR2	ENST00000437024.1,ENST00000429116.1,ENST00000424398.2,ENST00000439661.1,ENST00000219481.5	chr16	460971:461076:461360:461578:461889:461928,	461361	461578	461408	461408	Nonsense_Mutation	C	T	p.Q237*
PAAD	TCGA-IB-7651-01	STEAP2	ENST00000394626.1,ENST00000394629.2	chr7	89859185:89859350:89861650:89861798:89866204:89866922,	89861651	89861798	89861714	89861714	Nonsense_Mutation	C	T	p.R417*
PAAD	TCGA-IB-7651-01	RHCE	ENST00000349438.4	chr1	25696957:25697031:25701839:25701919:25712201:25712335,25696957:25697031:25701839:25701919:25715466:25715604,	25701840	25701919	25701914	25701914	Nonsense_Mutation	C	T	p.W269*
PAAD	TCGA-IB-7651-01	STXBP6	ENST00000419632.2,ENST00000550887.1,ENST00000323944.5,ENST00000546511.1,ENST00000548724.1,ENST00000396700.1	chr14	25281697:25281938:25288242:25288400:25325141:25325307,	25288243	25288400	25288317	25288317	Nonsense_Mutation	G	A	p.R179*
PAAD	TCGA-IB-7651-01	WDR33	ENST00000322313.4	chr2	128467266:128467430:128471156:128471595:128474728:128474837,	128471157	128471595	128471362	128471362	Nonsense_Mutation	G	A	p.R1035*
PAAD	TCGA-IB-7651-01	SNAP23	ENST00000249647.3,ENST00000563333.1,ENST00000568514.1,ENST00000563765.1	chr15	42807434:42807552:42821872:42822017:42823610:42823642,42820459:42820618:42821872:42822017:42823610:42823642,	42821873	42822017	42822003	42822003	Nonsense_Mutation	C	T	p.R186*
PAAD	TCGA-IB-7651-01	TRIB3	ENST00000422053.2,ENST00000217233.3,ENST00000449710.1	chr20	368654:368945:371930:372223:376841:377072,	371931	372223	372084	372084	Nonsense_Mutation	C	T	p.R149*
PAAD	TCGA-IB-7651-01	MCM10	ENST00000378714.3,ENST00000378694.1,ENST00000484800.2	chr10	13243420:13243534:13246218:13246364:13251090:13251133,	13246219	13246364	13246275	13246275	Nonsense_Mutation	C	A	p.Y803*
PAAD	TCGA-IB-7651-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000414834.2,ENST00000546649.1,ENST00000546757.1,ENST00000358214.5,ENST00000547312.1,ENST00000553031.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1	chr12	32893342:32893452:32895522:32895682:32896287:32896515,	32895523	32895682	32895632	32895632	Nonsense_Mutation	G	T	p.E676*
PAAD	TCGA-IB-7651-01	FAM160A2	ENST00000265978.4	chr11	6239034:6239380:6239787:6239993:6240200:6240280,	6239788	6239993	6239851	6239851	Nonsense_Mutation	C	A	p.E472*
PAAD	TCGA-IB-7651-01	FAM160A2	ENST00000524416.1,ENST00000449352.2	chr11	6239034:6239380:6239829:6239993:6240200:6240280,	6239830	6239993	6239851	6239851	Nonsense_Mutation	C	A	p.E472*
PAAD	TCGA-IB-7651-01	PRDM4	ENST00000228437.5	chr12	108140051:108140201:108145191:108145986:108147700:108147886,	108145192	108145986	108145246	108145246	Nonsense_Mutation	G	A	p.Q358*
PAAD	TCGA-IB-7651-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74309063:74309161:74310709:74310839:74313178:74313393,	74310710	74310839	74310810	74310810	Nonsense_Mutation	G	T	p.G272*
PAAD	TCGA-IB-7651-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699003	17699003	Nonsense_Mutation	G	A	p.W914*
PAAD	TCGA-IB-7651-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145155993	145155993	Nonsense_Mutation	G	A	p.R921*
PAAD	TCGA-IB-7651-01	MIEN1	ENST00000469568.1,ENST00000394231.3	chr17	37885408:37885858:37885937:37886014:37886446:37886544,	37885938	37886014	37885946	37885946	Nonsense_Mutation	C	A	p.E86*
PAAD	TCGA-IB-7651-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516521	195516521	Nonsense_Mutation	G	A	p.Q644*
PAAD	TCGA-IB-7651-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26942681:26942816:26943113:26943215:26943396:26943527,	26943114	26943215	26943182	26943182	Nonsense_Mutation	G	A	p.R2108*
PAAD	TCGA-IB-7651-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2,ENST00000550968.1	chr12	112641439:112641576:112642289:112642427:112645677:112645804,	112642290	112642427	112642296	112642296	Nonsense_Mutation	G	A	p.R2609*
PAAD	TCGA-IB-7651-01	ABI2	ENST00000261016.6,ENST00000441061.1	chr2	204193206:204193354:204231599:204231767:204244930:204244996,204193206:204193354:204231599:204231767:204240779:204240855,	204231600	204231767	204231708	204231708	Nonsense_Mutation	C	A	p.C5*
PAAD	TCGA-IB-7651-01	ABI2	ENST00000416001.1	chr2	204193206:204193354:204231599:204231719:204267298:204267457,	204231600	204231719	204231708	204231708	Nonsense_Mutation	C	A	p.C5*
PAAD	TCGA-IB-7651-01	DCBLD2	ENST00000326840.6,ENST00000326857.9	chr3	98539091:98539132:98541071:98541205:98541512:98541585,	98541072	98541205	98541110	98541110	Nonsense_Mutation	A	C	p.Y264*
PAAD	TCGA-IB-7651-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640365	36640365	Nonsense_Mutation	G	T	p.C618*
PAAD	TCGA-IB-7651-01	PIK3R4	ENST00000356763.3	chr3	130452391:130452974:130454712:130454846:130463329:130464108,	130454713	130454846	130454718	130454718	Nonsense_Mutation	C	A	p.E288*
PAAD	TCGA-IB-7651-01	MTCH2	ENST00000534074.1,ENST00000542981.1,ENST00000302503.3,ENST00000525649.1	chr11	47640390:47640471:47644252:47644328:47647225:47647292,	47644253	47644328	47644304	47644304	Nonsense_Mutation	G	T	p.Y258*
PAAD	TCGA-IB-7651-01	DCAF13	ENST00000518554.1,ENST00000519682.1	chr8	104427639:104427744:104432491:104432691:104438283:104438373,104427639:104427744:104432491:104432691:104433202:104433310,	104432492	104432691	104432575	104432575	Nonsense_Mutation	C	T	p.R204*
PAAD	TCGA-IB-7651-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877748	150877748	Nonsense_Mutation	G	T	p.G323*
PAAD	TCGA-IB-7651-01	TANC1	ENST00000470074.1,ENST00000263635.6,ENST00000454300.1	chr2	160082198:160082290:160084329:160084476:160085306:160085407,	160084330	160084476	160084456	160084456	Nonsense_Mutation	C	T	p.R1344*
PAAD	TCGA-IB-7651-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21859105:21859222:21859621:21859801:21859991:21860105,	21859622	21859801	21859667	21859667	Nonsense_Mutation	C	T	p.W2340*
PAAD	TCGA-IB-7651-01	RFX5	ENST00000290524.4,ENST00000368870.2,ENST00000452513.2,ENST00000392746.3,ENST00000452671.2,ENST00000436637.1	chr1	151315817:151315918:151316156:151316358:151316672:151316754,	151316157	151316358	151316355	151316355	Nonsense_Mutation	C	A	p.E187*
PAAD	TCGA-IB-7651-01	RUFY3	ENST00000417478.2,ENST00000536664.1,ENST00000381006.3,ENST00000502653.1,ENST00000226328.4	chr4	71644085:71644155:71648807:71648900:71650512:71650596,	71648808	71648900	71648856	71648856	Nonsense_Mutation	C	T	p.R315*
PAAD	TCGA-IB-7651-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057668	145057668	Nonsense_Mutation	C	A	p.E697*
PAAD	TCGA-IB-7651-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057668	145057668	Nonsense_Mutation	C	A	p.E697*
PAAD	TCGA-IB-7651-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000324330.9,ENST00000245441.5,ENST00000453401.2,ENST00000382043.4	chr14	51238049:51238186:51239018:51239186:51239666:51239716,	51239019	51239186	51239168	51239168	Nonsense_Mutation	G	A	p.R278*
PAAD	TCGA-IB-7651-01	STEAP4	ENST00000380079.4	chr7	87910229:87910394:87911955:87912483:87913128:87913205,	87911956	87912483	87912325	87912325	Nonsense_Mutation	A	C	p.Y205*
PAAD	TCGA-IB-7651-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72139064:72139339:72152078:72152348:72165697:72165844,	72152079	72152348	72152161	72152161	Nonsense_Mutation	C	T	p.R1063*
PAAD	TCGA-IB-7651-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414156	1414156	Nonsense_Mutation	G	T	p.G556*
PAAD	TCGA-IB-7651-01	ATAD2B	ENST00000238789.5,ENST00000381024.4	chr2	24021007:24021193:24033185:24033372:24042616:24042725,	24033186	24033372	24033200	24033200	Nonsense_Mutation	C	A	p.E814*
PAAD	TCGA-IB-7651-01	NDFIP1	ENST00000253814.4	chr5	141520127:141520194:141524135:141524241:141531295:141533760,	141524136	141524241	141524156	141524156	Nonsense_Mutation	G	T	p.G195*
PAAD	TCGA-IB-7651-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425553	77425553	Nonsense_Mutation	G	A	p.R1291*
PAAD	TCGA-IB-7651-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197074013	197074013	Nonsense_Mutation	C	T	p.W1456*
PAAD	TCGA-IB-7651-01	EI24	ENST00000534430.1,ENST00000527628.1,ENST00000530985.1,ENST00000531350.1,ENST00000527675.1,ENST00000278903.6,ENST00000525737.1	chr11	125449988:125450100:125451106:125451218:125452241:125452293,	125451107	125451218	125451139	125451139	Nonsense_Mutation	G	T	p.E236*
PAAD	TCGA-IB-7651-01	DLAT	ENST00000531306.1,ENST00000533297.1,ENST00000280346.6,ENST00000537636.1,ENST00000393051.1	chr11	111915861:111915954:111916586:111916694:111921957:111922073,	111916587	111916694	111916599	111916599	Nonsense_Mutation	C	T	p.R435*
PAAD	TCGA-IB-7651-01	OGDH	ENST00000222673.5,ENST00000419661.1,ENST00000443864.2	chr7	44684925:44685117:44687255:44687358:44706334:44706450,	44687256	44687358	44687259	44687259	Nonsense_Mutation	C	T	p.R140*
PAAD	TCGA-IB-7651-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6843145:6843177:6848008:6848125:6850680:6850768,	6848009	6848125	6848025	6848025	Nonsense_Mutation	G	T	p.E655*
PAAD	TCGA-IB-7651-01	DHX57	ENST00000452978.1	chr2	39025493:39025584:39029856:39030057:39033700:39033835,39025493:39025584:39029856:39030057:39040962:39041037,	39029857	39030057	39030003	39030003	Nonsense_Mutation	G	A	p.R1291*
PAAD	TCGA-IB-7651-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000334686.6,ENST00000494598.1	chr3	155218491:155218583:155222343:155222415:155232511:155232673,	155222344	155222415	155222376	155222376	Nonsense_Mutation	G	A	p.R528*
PAAD	TCGA-IB-7651-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000358894.6,ENST00000455906.1,ENST00000415763.1,ENST00000326996.6,ENST00000471582.1,ENST00000422202.1	chr20	61957447:61957501:61958103:61958175:61959303:61959339,	61958104	61958175	61958146	61958146	Nonsense_Mutation	C	T	p.R1174*
PAAD	TCGA-IB-7651-01	VPS36	ENST00000378060.4	chr13	53001321:53001354:53007796:53007883:53008927:53009017,	53007797	53007883	53007820	53007820	Nonsense_Mutation	C	A	p.E169*
PAAD	TCGA-IB-7651-01	MYO1B	ENST00000339514.4,ENST00000304164.4,ENST00000392318.3,ENST00000392316.1	chr2	192228883:192229002:192234267:192234354:192234952:192235018,	192234268	192234354	192234334	192234334	Nonsense_Mutation	C	T	p.R367*
PAAD	TCGA-IB-7651-01	NPRL2	ENST00000493465.1	chr3	50385189:50385332:50385957:50385994:50386115:50386213,	50385958	50385994	50385991	50385991	Nonsense_Mutation	G	T	p.Y229*
PAAD	TCGA-IB-7651-01	DHPS	ENST00000210060.7,ENST00000594424.1,ENST00000595844.1,ENST00000351660.5,ENST00000595912.1,ENST00000596162.1,ENST00000601639.1,ENST00000597152.1,ENST00000598850.1,ENST00000601537.1	chr19	12788141:12788210:12790270:12790357:12790436:12790533,	12790271	12790357	12790297	12790297	Nonsense_Mutation	C	A	p.E218*
PAAD	TCGA-IB-7651-01	TSPAN4	ENST00000409531.1,ENST00000527644.1,ENST00000397411.2,ENST00000397408.1,ENST00000397404.1,ENST00000346501.4,ENST00000397397.2,ENST00000409543.2,ENST00000397406.1	chr11	847200:847300:862549:862741:864436:864511,850287:850367:862549:862741:864436:864511,	862550	862741	862729	862729	Nonsense_Mutation	C	A	p.C81*
PAAD	TCGA-IB-7651-01	MRPL48	ENST00000411840.2,ENST00000398483.3,ENST00000310614.7,ENST00000540162.1,ENST00000508278.2,ENST00000535529.1,ENST00000314282.7,ENST00000544819.1	chr11	73555851:73556021:73570951:73571054:73574216:73574306,	73570952	73571054	73571043	73571043	Nonsense_Mutation	C	T	p.R56*
PAAD	TCGA-IB-7651-01	TMEM173	ENST00000510817.1,ENST00000514119.1,ENST00000511886.1,ENST00000509573.1,ENST00000503287.1,ENST00000512606.1,ENST00000330794.4	chr5	138858046:138858093:138860374:138860483:138860743:138860927,	138860375	138860483	138860412	138860412	Nonsense_Mutation	C	T	p.W161*
PAAD	TCGA-IB-7651-01	PARP12	ENST00000473341.1,ENST00000263549.3,ENST00000496624.1,ENST00000488726.1	chr7	139726003:139726148:139727075:139727206:139728412:139728488,	139727076	139727206	139727113	139727113	Nonsense_Mutation	G	A	p.R531*
PAAD	TCGA-IB-7651-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156911	145156911	Nonsense_Mutation	G	A	p.Q615*
PAAD	TCGA-IB-7651-01	LAMP1	ENST00000397181.3,ENST00000332556.4	chr13	113975718:113975785:113975871:113976042:113976596:113976909,	113975872	113976042	113975904	113975904	Nonsense_Mutation	C	T	p.R326*
PAAD	TCGA-IB-7651-01	RAPGEF3	ENST00000171000.4,ENST00000548919.1,ENST00000479866.1,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000395358.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2,ENST00000494764.1	chr12	48140642:48140682:48141326:48141409:48141494:48141645,	48141327	48141409	48141337	48141337	Nonsense_Mutation	G	A	p.R474*
PAAD	TCGA-IB-7651-01	NOL4	ENST00000538587.1,ENST00000261592.5,ENST00000535384.1	chr18	31523028:31523142:31537289:31537481:31538202:31538382,	31537290	31537481	31537445	31537445	Nonsense_Mutation	G	A	p.R425*
PAAD	TCGA-IB-7651-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000583809.1,ENST00000581231.1,ENST00000583054.1,ENST00000317931.7	chr18	6244565:6244587:6263945:6264037:6301901:6301956,	6263946	6264037	6263998	6263998	Nonsense_Mutation	C	T	p.W56*
PAAD	TCGA-IB-7651-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53680262	53680262	Nonsense_Mutation	C	T	p.Q1248*
PAAD	TCGA-IB-7651-01	DAW1	ENST00000309931.2,ENST00000545118.1,ENST00000454999.1,ENST00000373666.2	chr2	228755970:228756029:228758510:228758633:228762897:228762997,	228758511	228758633	228758521	228758521	Nonsense_Mutation	G	T	p.G110*
PAAD	TCGA-IB-7651-01	OSBPL1A	ENST00000319481.3,ENST00000399443.3,ENST00000357041.4	chr18	21752339:21752447:21757976:21758159:21759701:21759799,	21757977	21758159	21758017	21758017	Nonsense_Mutation	C	A	p.E685*
PAAD	TCGA-IB-7651-01	NPRL3	ENST00000405960.3,ENST00000457916.1,ENST00000399953.3	chr16	162658:162774:169124:169254:174935:175047,162658:162774:169124:169254:180520:180590,167299:167374:169124:169254:180520:180590,	169125	169254	169169	169169	Nonsense_Mutation	G	A	p.R92*
PAAD	TCGA-IB-7651-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219362748:219362880:219374701:219374863:219394678:219394763,	219374702	219374863	219374752	219374752	Nonsense_Mutation	C	T	p.W325*
PAAD	TCGA-IB-7651-01	TENM4	ENST00000278550.7	chr11	78437123:78437267:78440420:78440688:78443360:78443622,	78440421	78440688	78440485	78440485	Nonsense_Mutation	A	C	p.Y1114*
PAAD	TCGA-IB-7651-01	VEPH1	ENST00000392832.2,ENST00000392833.2,ENST00000543418.1,ENST00000468233.1,ENST00000487753.1,ENST00000494677.1,ENST00000537559.1,ENST00000362010.2	chr3	157178003:157178144:157188102:157188318:157213000:157213295,	157188103	157188318	157188105	157188105	Nonsense_Mutation	G	A	p.Q118*
PAAD	TCGA-IB-7651-01	MCCC2	ENST00000512218.2	chr5	70936829:70936910:70939597:70939722:70942037:70942104,	70939598	70939722	70939654	70939654	Nonsense_Mutation	C	T	p.R361*
PAAD	TCGA-IB-7651-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19140819:19140951:19144163:19144278:19146106:19146167,	19144164	19144278	19144199	19144199	Nonsense_Mutation	C	A	p.E596*
PAAD	TCGA-IB-7651-01	C1QA	ENST00000438241.1	chr1	22963254:22963353:22964102:22964272:22965325:22965654,	22964103	22964272	22964203	22964203	Nonsense_Mutation	A	T	p.K32*
PAAD	TCGA-IB-7651-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224357	51224357	Nonsense_Mutation	G	A	p.R1131*
PAAD	TCGA-IB-7651-01	RBCK1	ENST00000475269.1	chr20	389362:389423:390524:390669:398169:398263,389334:389423:390524:390669:391055:391166,	390525	390669	390527	390527	Nonsense_Mutation	G	T	p.E9*
PAAD	TCGA-IB-7651-01	RBCK1	ENST00000400245.3	chr20	389334:389423:390473:390669:391055:391166,	390474	390669	390527	390527	Nonsense_Mutation	G	T	p.E9*
PAAD	TCGA-IB-7651-01	DLG1	ENST00000392382.2,ENST00000450955.1,ENST00000456699.2,ENST00000471733.1,ENST00000357674.4	chr3	196869588:196869639:196921295:196921460:197009549:197009716,196888510:196888609:196921295:196921460:197009549:197009716,196876625:196876667:196921295:196921460:197009549:197009716,	196921296	196921460	196921409	196921409	Nonsense_Mutation	G	A	p.Q124*
PAAD	TCGA-IB-7651-01	IL33	ENST00000456383.2	chr9	6215808:6215852:6241683:6241785:6250473:6250599,	6241684	6241785	6241745	6241745	Nonsense_Mutation	G	A	p.W17*
PAAD	TCGA-IB-7651-01	FGD4	ENST00000534526.2,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000493087.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32777909:32778002:32778587:32778713:32786482:32786623,	32778588	32778713	32778624	32778624	Nonsense_Mutation	C	T	p.R558*
PAAD	TCGA-IB-7651-01	RBM48	ENST00000265732.5	chr7	92161717:92161863:92163715:92164284:92166164:92166848,	92163716	92164284	92164195	92164195	Nonsense_Mutation	G	T	p.G310*
PAAD	TCGA-IB-7651-01	ACAA1	ENST00000444607.2,ENST00000333167.8,ENST00000301810.7,ENST00000421218.1,ENST00000411549.1	chr3	38173416:38173496:38175442:38175500:38178082:38178115,	38175443	38175500	38175489	38175489	Nonsense_Mutation	G	A	p.Q93*
PAAD	TCGA-IB-7651-01	SAMD8	ENST00000372690.3,ENST00000542569.1,ENST00000372687.4	chr10	76924402:76924498:76928298:76928416:76935823:76935974,	76928299	76928416	76928312	76928312	Nonsense_Mutation	C	T	p.R230*
PAAD	TCGA-H8-A6C1-01	NRP2	ENST00000412873.2,ENST00000540841.1,ENST00000540178.1,ENST00000272849.3,ENST00000357118.4,ENST00000357785.5,ENST00000360409.3	chr2	206607926:206608276:206610469:206610614:206614448:206614565,	206610470	206610614	206610562	206610562	Nonsense_Mutation	G	A	p.W578*
PAAD	TCGA-H8-A6C1-01	FCRLB	ENST00000367948.2,ENST00000392158.1	chr1	161695610:161695877:161696492:161696783:161697036:161697454,	161696493	161696783	161696656	161696656	Nonsense_Mutation	C	A	p.S198*
PAAD	TCGA-H8-A6C1-01	FCRLB	ENST00000336830.5,ENST00000367944.3	chr1	161695610:161695877:161696596:161696783:161697036:161697454,	161696597	161696783	161696656	161696656	Nonsense_Mutation	C	A	p.S198*
PAAD	TCGA-H8-A6C1-01	FCRLB	ENST00000367946.3,ENST00000367945.1	chr1	161695610:161695877:161696637:161696783:161697036:161697454,	161696638	161696783	161696656	161696656	Nonsense_Mutation	C	A	p.S198*
PAAD	TCGA-2J-AABT-01	USP25	ENST00000400183.2,ENST00000285679.6,ENST00000285681.2	chr21	17203719:17203948:17205666:17205867:17214716:17214859,	17205667	17205867	17205843	17205843	Nonsense_Mutation	G	T	p.E724*
PAAD	TCGA-2J-AABT-01	ARMC3	ENST00000409983.3	chr10	23295812:23295910:23297204:23297303:23297764:23297860,	23297205	23297303	23297251	23297251	Nonsense_Mutation	C	T	p.R626*
PAAD	TCGA-2J-AABT-01	ADCY10	ENST00000367851.4	chr1	167868660:167868866:167870899:167871043:167871253:167871292,	167870900	167871043	167870912	167870912	Nonsense_Mutation	G	A	p.R50*
PAAD	TCGA-2J-AABT-01	ADCY10	ENST00000367848.1	chr1	167868660:167868866:167870899:167871080:167871253:167871292,	167870900	167871080	167870912	167870912	Nonsense_Mutation	G	A	p.R50*
PAAD	TCGA-IB-8126-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72421429:72421632:72422065:72422186:72422474:72422544,	72422066	72422186	72422096	72422096	Nonsense_Mutation	G	A	p.R395*
PAAD	TCGA-IB-8126-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000331029.7,ENST00000332035.6,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29695184:29695270:29695588:29695841:29696111:29696326,29695223:29695321:29695588:29695841:29696111:29696326,	29695589	29695841	29695789	29695789	Nonsense_Mutation	G	T	p.E627*
PAAD	TCGA-IB-A6UG-01	IRX6	ENST00000290552.7	chr16	55361207:55361317:55361497:55361805:55362611:55363223,	55361498	55361805	55361532	55361532	Nonsense_Mutation	C	T	p.R150*
PAAD	TCGA-IB-A6UG-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-IB-A6UG-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-OE-A75W-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
PAAD	TCGA-OE-A75W-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63509712	63509712	Nonsense_Mutation	C	T	p.R187*
PAAD	TCGA-OE-A75W-01	MND1	ENST00000509752.1,ENST00000240488.3,ENST00000504860.1	chr4	154315413:154315488:154318370:154318485:154330122:154330167,	154318371	154318485	154318479	154318479	Nonsense_Mutation	G	T	p.E154*
PAAD	TCGA-OE-A75W-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41192857	41192857	Nonsense_Mutation	G	A	p.W614*
PAAD	TCGA-IB-A5SQ-01	RDX	ENST00000528498.1,ENST00000544551.1,ENST00000530131.1,ENST00000530749.1,ENST00000528900.1,ENST00000343115.4,ENST00000405097.1	chr11	110106823:110106916:110108216:110108377:110118427:110118558,	110108217	110108377	110108327	110108327	Nonsense_Mutation	G	A	p.R381*
PAAD	TCGA-IB-7890-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578254	7578254	Nonsense_Mutation	C	A	p.G199*
PAAD	TCGA-LB-A7SX-01	XPR1	ENST00000367590.4,ENST00000367589.3	chr1	180780542:180780624:180793888:180794079:180794300:180794480,	180793889	180794079	180793903	180793903	Nonsense_Mutation	G	T	p.E260*
PAAD	TCGA-LB-A7SX-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
PAAD	TCGA-2J-AABE-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492875	56492875	Nonsense_Mutation	G	A	p.Q22*
PAAD	TCGA-XD-AAUL-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634978	70634978	Nonsense_Mutation	G	T	p.C54*
PAAD	TCGA-US-A77E-01	UNC80	ENST00000439458.1,ENST00000272845.6	chr2	210636762:210636888:210637817:210637866:210640612:210640769,	210637818	210637866	210637852	210637852	Nonsense_Mutation	G	T	p.E43*
PAAD	TCGA-IB-A7M4-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141148	167141148	Nonsense_Mutation	G	A	p.R598*
PAAD	TCGA-IB-A7M4-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141148	167141148	Nonsense_Mutation	G	A	p.R598*
PAAD	TCGA-IB-A7M4-01	LRBA	ENST00000510413.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000515096.1,ENST00000510157.1,ENST00000357115.3	chr4	151186793:151186964:151199004:151199156:151203601:151203795,	151199005	151199156	151199141	151199141	Nonsense_Mutation	G	A	p.R2778*
PAAD	TCGA-HZ-7922-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
PAAD	TCGA-FZ-5926-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33320362:33320399:33324493:33324562:33328166:33328321,	33324494	33324562	33324554	33324554	Nonsense_Mutation	G	A	p.Q1968*
PAAD	TCGA-2J-AAB1-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981145	201981145	Nonsense_Mutation	G	A	p.W75*
PAAD	TCGA-IB-7645-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
PAAD	TCGA-FZ-5923-01	LRCH3	ENST00000441090.2,ENST00000414675.2	chr3	197559067:197559188:197562544:197562609:197566191:197566268,	197562545	197562609	197562601	197562601	Nonsense_Mutation	G	T	p.E387*
PAAD	TCGA-FZ-5923-01	LRCH3	ENST00000536618.1,ENST00000438796.2,ENST00000425562.2,ENST00000334859.4	chr3	197559067:197559188:197562544:197562693:197566191:197566268,	197562545	197562693	197562601	197562601	Nonsense_Mutation	G	T	p.E387*
PAAD	TCGA-FZ-5923-01	EIF4ENIF1	ENST00000397525.1,ENST00000397523.1,ENST00000330125.5	chr22	31858917:31859119:31859666:31859953:31864160:31864288,	31859667	31859953	31859948	31859948	Nonsense_Mutation	G	A	p.R102*
PAAD	TCGA-FB-AAQ6-01	CRYZL1	ENST00000381554.3,ENST00000361534.2,ENST00000290244.5,ENST00000452420.1,ENST00000437996.1,ENST00000381540.3,ENST00000441940.1,ENST00000420072.1,ENST00000429827.1	chr21	34968036:34968142:34969585:34969707:34971455:34971554,	34969586	34969707	34969588	34969588	Nonsense_Mutation	G	A	p.Q290*
PAAD	TCGA-FB-AAQ6-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151904384:151904513:151917607:151917820:151919085:151919151,	151917608	151917820	151917775	151917775	Nonsense_Mutation	G	C	p.S1182*
PAAD	TCGA-FB-AAQ6-01	PACRG	ENST00000366888.2,ENST00000366889.2,ENST00000541974.1	chr6	163483317:163483353:163510290:163510440:163735858:163736174,	163510291	163510440	163510311	163510311	Nonsense_Mutation	C	T	p.R162*
PAAD	TCGA-IB-AAUO-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24831899	24831899	Nonsense_Mutation	G	T	p.E917*
PAAD	TCGA-2J-AABF-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256510	19256510	Nonsense_Mutation	G	A	p.R183*
PAAD	TCGA-2J-AABF-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-2J-AABF-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-2L-AAQE-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579575	7579575	Nonsense_Mutation	G	A	p.Q38*
PAAD	TCGA-HZ-A8P0-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
PAAD	TCGA-HZ-A8P0-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
PAAD	TCGA-3A-A9I5-01	KIF27	ENST00000413982.1	chr9	86495211:86495409:86498727:86498933:86501955:86502111,86485433:86485547:86498727:86498933:86501955:86502111,	86498728	86498933	86498835	86498835	Nonsense_Mutation	T	A	p.K780*
PAAD	TCGA-RB-AA9M-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577082	7577082	Nonsense_Mutation	C	A	p.E286*
PAAD	TCGA-3A-A9J0-01	MYO5C	ENST00000261839.7	chr15	52531929:52532076:52534244:52534410:52536552:52536715,	52534245	52534410	52534277	52534277	Nonsense_Mutation	G	A	p.R842*
PAAD	TCGA-3A-A9J0-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158047	27158047	Nonsense_Mutation	G	T	p.E91*
PAAD	TCGA-2J-AABP-01	SNX10	ENST00000338523.4,ENST00000396376.1	chr7	26386039:26386086:26400594:26400681:26404154:26404255,	26400595	26400681	26400616	26400616	Nonsense_Mutation	C	T	p.R16*
PAAD	TCGA-FZ-5922-01	PPIL2	ENST00000406385.1,ENST00000446951.1,ENST00000492445.2,ENST00000335025.8,ENST00000398831.3,ENST00000417788.1	chr22	22049043:22049106:22049225:22049359:22049682:22049785,	22049226	22049359	22049265	22049265	Nonsense_Mutation	G	T	p.E458*
PAAD	TCGA-2J-AAB9-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579377	7579377	Nonsense_Mutation	G	A	p.Q104*
PAAD	TCGA-FB-A4P5-01	SEPT9	ENST00000329047.8,ENST00000590294.1	chr17	75303222:75303279:75398140:75398785:75478225:75478417,75369418:75369634:75398140:75398785:75478225:75478417,75277532:75277636:75398140:75398785:75478225:75478417,75316394:75316430:75398140:75398785:75478225:75478417,	75398141	75398785	75398245	75398245	Nonsense_Mutation	C	T	p.Q43*
PAAD	TCGA-YB-A89D-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024431	237024431	Nonsense_Mutation	G	T	p.E684*
PAAD	TCGA-HZ-A8P1-01	IKBKB	ENST00000519735.1,ENST00000521661.1,ENST00000342222.2,ENST00000518647.1	chr8	42128953:42128987:42129600:42129723:42147673:42147791,42128953:42128987:42129600:42129723:42146151:42146246,	42129601	42129723	42129663	42129663	Nonsense_Mutation	G	A	p.W15*
PAAD	TCGA-2J-AABK-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-2J-AABK-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-RL-AAAS-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
PAAD	TCGA-IB-A5SO-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
PAAD	TCGA-S4-A8RM-01	ANKRD53	ENST00000441349.1,ENST00000272421.6	chr2	71209706:71209827:71211252:71211379:71211740:71212469,	71211253	71211379	71211256	71211256	Nonsense_Mutation	C	T	p.Q303*
PAAD	TCGA-IB-7891-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131315	202131315	Nonsense_Mutation	G	T	p.E95*
PAAD	TCGA-IB-7891-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131315	202131315	Nonsense_Mutation	G	T	p.E95*
PAAD	TCGA-3A-A9IU-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
PAAD	TCGA-3A-A9IU-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
PAAD	TCGA-HZ-A77Q-01	IKZF1	ENST00000343574.5,ENST00000438033.1,ENST00000471793.1,ENST00000331340.3	chr7	50450237:50450405:50455042:50455168:50459426:50459485,	50455043	50455168	50455075	50455075	Nonsense_Mutation	C	T	p.R208*
PAAD	TCGA-HZ-A77Q-01	PTPRN	ENST00000295718.2,ENST00000446182.1,ENST00000440552.1,ENST00000412847.1,ENST00000451506.1,ENST00000606213.1,ENST00000409251.3,ENST00000442029.1,ENST00000423636.2	chr2	220168456:220168553:220172165:220172279:220172513:220172564,	220172166	220172279	220172205	220172205	Nonsense_Mutation	G	A	p.Q81*
PAAD	TCGA-FB-A7DR-01	STRAP	ENST00000419869.2	chr12	16036016:16036055:16036474:16036610:16042861:16042943,16035328:16035753:16036474:16036610:16042861:16042939,	16036475	16036610	16036495	16036495	Nonsense_Mutation	C	T	p.Q45*
PAAD	TCGA-HV-A5A3-01	EPB41L3	ENST00000542146.1,ENST00000579271.1	chr18	5397396:5397425:5398019:5398142:5400967:5401042,5397396:5397425:5398019:5398142:5406775:5406967,5397396:5397425:5398019:5398142:5400495:5400594,	5398020	5398142	5398076	5398076	Nonsense_Mutation	G	A	p.R806*
PAAD	TCGA-XN-A8T3-01	ABCA4	ENST00000370225.3,ENST00000535881.1,ENST00000536513.1	chr1	94463416:94463666:94466391:94466484:94466557:94466661,	94466392	94466484	94466426	94466426	Nonsense_Mutation	G	A	p.R2149*
PAAD	TCGA-2J-AABA-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101342	27101342	Nonsense_Mutation	G	T	p.E1542*
PAAD	TCGA-FB-AAPQ-01	FCER1G	ENST00000289902.1,ENST00000367992.3	chr1	161185086:161185160:161187775:161187867:161188030:161188066,	161187776	161187867	161187859	161187859	Nonsense_Mutation	C	T	p.R45*
PAAD	TCGA-FB-AAPQ-01	CYP2R1	ENST00000334636.5,ENST00000530609.1	chr11	14900659:14900753:14901681:14902314:14907321:14907387,14900659:14900989:14901681:14902314:14907321:14907387,	14901682	14902314	14901766	14901766	Nonsense_Mutation	C	A	p.E73*
PAAD	TCGA-FB-AAPQ-01	CYP2R1	ENST00000532378.1	chr11	14900659:14900989:14901681:14901905:14907321:14907387,	14901682	14901905	14901766	14901766	Nonsense_Mutation	C	A	p.E73*
PAAD	TCGA-YY-A8LH-01	RDX	ENST00000528498.1,ENST00000544551.1,ENST00000530131.1,ENST00000530749.1,ENST00000528900.1,ENST00000343115.4,ENST00000405097.1	chr11	110106823:110106916:110108216:110108377:110118427:110118558,	110108217	110108377	110108333	110108333	Nonsense_Mutation	G	A	p.R379*
PAAD	TCGA-M8-A5N4-01	WASH4P	ENST00000462860.1,ENST00000538848.2,ENST00000483390.2,ENST00000326592.9	chr16	66540:66738:66915:67051:67290:67427,	66916	67051	67048	67048	Nonsense_Mutation	G	C	p.Y196*
PAAD	TCGA-FB-AAPZ-01	C5orf34	ENST00000514462.1	chr5	43505849:43506496:43508678:43508768:43514907:43515126,	43508679	43508768	43508741	43508741	Nonsense_Mutation	G	A	p.R75*
PAAD	TCGA-FB-AAPZ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
PAAD	TCGA-IB-7886-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-IB-7886-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PAAD	TCGA-2L-AAQJ-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914871	39914871	Nonsense_Mutation	C	G	p.S1004*
PAAD	TCGA-2L-AAQJ-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2,ENST00000550968.1	chr12	112641439:112641576:112642289:112642427:112645677:112645804,	112642290	112642427	112642326	112642326	Nonsense_Mutation	C	A	p.E2599*
PAAD	TCGA-2L-AAQJ-01	STK32A	ENST00000398523.3,ENST00000306304.6,ENST00000397936.3	chr5	146741079:146741177:146750216:146750333:146752731:146752857,	146750217	146750333	146750320	146750320	Nonsense_Mutation	C	A	p.S255*
PAAD	TCGA-IB-7887-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408064	130408064	Nonsense_Mutation	G	A	p.R1281*
PAAD	TCGA-2J-AAB6-01	PLEKHA5	ENST00000355397.3,ENST00000539256.1,ENST00000299275.6,ENST00000538714.1	chr12	19498775:19498822:19501332:19501453:19506817:19506936,	19501333	19501453	19501393	19501393	Nonsense_Mutation	G	T	p.E821*
PAAD	TCGA-2J-AABO-01	CD44	ENST00000433354.2,ENST00000428726.2,ENST00000525685.1,ENST00000449691.2,ENST00000437706.2	chr11	35211561:35211612:35218292:35218421:35219667:35219793,	35218293	35218421	35218362	35218362	Nonsense_Mutation	C	A	p.S246*
PAAD	TCGA-2J-AABO-01	LMO7	ENST00000465261.2,ENST00000321797.8,ENST00000377534.3,ENST00000357063.3	chr13	76378455:76378677:76379614:76379896:76381615:76381823,	76379615	76379896	76379654	76379654	Nonsense_Mutation	G	A	p.W85*
PAAD	TCGA-2J-AABT-01	ADCY10	ENST00000367851.4	chr1	167868660:167868866:167870899:167871043:167871253:167871292,	167870900	167871043	167870912	167870912	Nonsense_Mutation	G	A	p.R142*
PAAD	TCGA-2J-AABT-01	ADCY10	ENST00000367848.1	chr1	167868660:167868866:167870899:167871080:167871253:167871292,	167870900	167871080	167870912	167870912	Nonsense_Mutation	G	A	p.R142*
PAAD	TCGA-2J-AABU-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19300184:19300329:19305349:19305525:19316414:19316515,	19305350	19305525	19305370	19305370	Nonsense_Mutation	G	A	p.W208*
PAAD	TCGA-2L-AAQJ-01	AFMID	ENST00000591952.1	chr17	76183481:76183514:76187050:76187141:76198579:76198684,76183481:76183514:76187050:76187141:76193226:76193641,76183481:76183514:76187050:76187141:76202991:76203133,	76187051	76187141	76187132	76187132	Nonsense_Mutation	G	T	p.G32*
PAAD	TCGA-2L-AAQJ-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914871	39914871	Nonsense_Mutation	C	G	p.S1033*
PAAD	TCGA-2L-AAQL-01	ANAPC4	ENST00000510092.1,ENST00000315368.3	chr4	25393959:25394043:25395426:25395513:25395931:25395996,	25395427	25395513	25395511	25395511	Nonsense_Mutation	C	T	p.Q292*
PAAD	TCGA-3A-A9IC-01	CD6	ENST00000346437.4,ENST00000344931.5,ENST00000352009.5,ENST00000452451.2,ENST00000313421.7,ENST00000344028.5	chr11	60776005:60776317:60777043:60777346:60778541:60778607,	60777044	60777346	60777109	60777109	Nonsense_Mutation	C	T	p.R283*
PAAD	TCGA-3E-AAAY-01	ABTB2	ENST00000530814.1,ENST00000298992.2,ENST00000435224.2	chr11	34194720:34194854:34218871:34219085:34226090:34226237,	34218872	34219085	34218927	34218927	Nonsense_Mutation	C	A	p.E397*
PAAD	TCGA-3E-AAAY-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Nonsense_Mutation	C	A	p.E294*
PAAD	TCGA-F2-A8YN-01	ZZEF1	ENST00000573183.1,ENST00000571436.1,ENST00000381638.2	chr17	3935419:3935552:3936121:3936296:3937308:3937441,	3936122	3936296	3936124	3936124	Nonsense_Mutation	G	A	p.Q2253*
PAAD	TCGA-FB-A4P5-01	SEPT9	ENST00000329047.8,ENST00000590294.1	chr17	75303222:75303279:75398140:75398785:75478225:75478417,75369418:75369634:75398140:75398785:75478225:75478417,75277532:75277636:75398140:75398785:75478225:75478417,75316394:75316430:75398140:75398785:75478225:75478417,	75398141	75398785	75398245	75398245	Nonsense_Mutation	C	T	p.Q61*
PAAD	TCGA-FB-AAPQ-01	CYP2R1	ENST00000334636.5,ENST00000530609.1	chr11	14900659:14900753:14901681:14902314:14907321:14907387,14900659:14900989:14901681:14902314:14907321:14907387,	14901682	14902314	14901766	14901766	Nonsense_Mutation	C	A	p.E306*
PAAD	TCGA-FB-AAPQ-01	CYP2R1	ENST00000532378.1	chr11	14900659:14900989:14901681:14901905:14907321:14907387,	14901682	14901905	14901766	14901766	Nonsense_Mutation	C	A	p.E306*
PAAD	TCGA-FB-AAQ0-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34877867:34878009:34878280:34878411:34882089:34882227,	34878281	34878411	34878358	34878358	Nonsense_Mutation	G	A	p.Q836*
PAAD	TCGA-FB-AAQ2-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155430	106155430	Nonsense_Mutation	A	T	p.K111*
PAAD	TCGA-FB-AAQ6-01	CRYZL1	ENST00000381554.3,ENST00000361534.2,ENST00000290244.5,ENST00000452420.1,ENST00000437996.1,ENST00000381540.3,ENST00000441940.1,ENST00000420072.1,ENST00000429827.1	chr21	34968036:34968142:34969585:34969707:34971455:34971554,	34969586	34969707	34969588	34969588	Nonsense_Mutation	G	A	p.Q266*
PAAD	TCGA-H6-A45N-01	TPRG1	ENST00000433971.1,ENST00000345063.3	chr3	188925164:188925383:188933080:188933172:188956521:188956698,	188933081	188933172	188933150	188933150	Nonsense_Mutation	C	T	p.Q94*
PAAD	TCGA-HZ-8002-01	RPL11	ENST00000482370.1,ENST00000374550.3	chr1	24021149:24021281:24022287:24022398:24022833:24022908,	24022288	24022398	24022341	24022341	Nonsense_Mutation	C	A	p.C150*
PAAD	TCGA-HZ-8002-01	PFKFB1	ENST00000545676.1	chrX	54986259:54986326:54987256:54987350:54989689:54989815,54986259:54986326:54987256:54987350:55024838:55024967,	54987257	54987350	54987327	54987327	Nonsense_Mutation	G	A	p.R83*
PAAD	TCGA-HZ-8636-01	OSGEP	ENST00000555223.1,ENST00000555656.1,ENST00000206542.4,ENST00000554249.1,ENST00000555785.1	chr14	20915836:20915849:20916062:20916153:20916264:20916330,	20916063	20916153	20916117	20916117	Nonsense_Mutation	G	A	p.R247*
PAAD	TCGA-HZ-8637-01	LTBP4	ENST00000601032.1,ENST00000599724.1,ENST00000545697.1,ENST00000595118.1	chr19	41119821:41119944:41120220:41120352:41125251:41125281,	41120221	41120352	41120241	41120241	Nonsense_Mutation	C	T	p.R968*
PAAD	TCGA-HZ-A77Q-01	ACADSB	ENST00000411816.1,ENST00000496730.2,ENST00000358776.4	chr10	124793871:124794031:124797262:124797363:124799981:124800173,	124797263	124797363	124797320	124797320	Nonsense_Mutation	C	A	p.S87*
PAAD	TCGA-HZ-A77Q-01	FAM129A	ENST00000367511.3,ENST00000487074.1	chr1	184775079:184775190:184777207:184777369:184787771:184787959,	184777208	184777369	184777291	184777291	Nonsense_Mutation	C	A	p.E418*
PAAD	TCGA-HZ-A77Q-01	PPIL4	ENST00000253329.2	chr6	149838489:149838586:149842195:149842307:149846278:149846345,	149842196	149842307	149842225	149842225	Nonsense_Mutation	G	T	p.S318*
PAAD	TCGA-HZ-A77Q-01	PHF3	ENST00000509330.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64346015:64346055:64389900:64390062:64394029:64394146,64346015:64346055:64389900:64390062:64401626:64401933,64356523:64356700:64389900:64390062:64394029:64394146,	64389901	64390062	64390021	64390021	Nonsense_Mutation	C	A	p.S122*
PAAD	TCGA-HZ-A8P0-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761248	93761248	Nonsense_Mutation	C	A	p.E40*
PAAD	TCGA-HZ-A8P0-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186544436	186544436	Nonsense_Mutation	G	T	p.S712*
PAAD	TCGA-IB-7647-01	TUBA1A	ENST00000295766.5,ENST00000550767.1,ENST00000552924.1,ENST00000547939.1,ENST00000301071.7	chr12	49579707:49579773:49580092:49580241:49580393:49580616,	49580093	49580241	49580155	49580155	Nonsense_Mutation	G	A	p.R105*
PAAD	TCGA-IB-7651-01	MCM10	ENST00000378714.3,ENST00000378694.1,ENST00000484800.2	chr10	13243420:13243534:13246218:13246364:13251090:13251133,	13246219	13246364	13246275	13246275	Nonsense_Mutation	C	A	p.Y804*
PAAD	TCGA-IB-7651-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832433	24832433	Nonsense_Mutation	C	T	p.Q1412*
PAAD	TCGA-IB-7651-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263600	1263600	Nonsense_Mutation	C	A	p.C1830*
PAAD	TCGA-IB-7651-01	MRPL48	ENST00000411840.2,ENST00000398483.3,ENST00000310614.7,ENST00000540162.1,ENST00000508278.2,ENST00000535529.1,ENST00000314282.7,ENST00000544819.1	chr11	73555851:73556021:73570951:73571054:73574216:73574306,	73570952	73571054	73571043	73571043	Nonsense_Mutation	C	T	p.R155*
PAAD	TCGA-IB-7651-01	MED17	ENST00000525613.1,ENST00000531920.1,ENST00000251871.3,ENST00000533367.1	chr11	93535000:93535138:93540683:93540801:93542882:93542961,	93540684	93540801	93540697	93540697	Nonsense_Mutation	C	T	p.Q494*
PAAD	TCGA-IB-7651-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000414834.2,ENST00000546649.1,ENST00000546757.1,ENST00000358214.5,ENST00000547312.1,ENST00000553031.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1	chr12	32893342:32893452:32895522:32895682:32896287:32896515,	32895523	32895682	32895632	32895632	Nonsense_Mutation	G	T	p.E702*
PAAD	TCGA-IB-7651-01	RAPGEF3	ENST00000171000.4,ENST00000548919.1,ENST00000479866.1,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000395358.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2,ENST00000494764.1	chr12	48140642:48140682:48141326:48141409:48141494:48141645,	48141327	48141409	48141337	48141337	Nonsense_Mutation	G	A	p.R516*
PAAD	TCGA-IB-7651-01	NR4A1	ENST00000243050.1,ENST00000360284.3,ENST00000545748.1,ENST00000394825.1,ENST00000550082.1,ENST00000394824.2	chr12	52448250:52448988:52449813:52449943:52450277:52450429,	52449814	52449943	52449883	52449883	Nonsense_Mutation	C	T	p.R316*
PAAD	TCGA-IB-7651-01	A2ML1	ENST00000299698.7,ENST00000539547.1,ENST00000541459.1	chr12	9008104:9008188:9009759:9009936:9010102:9010184,	9009760	9009936	9009783	9009783	Nonsense_Mutation	C	T	p.Q958*
PAAD	TCGA-IB-7651-01	PPP2R5C	ENST00000556218.1	chr14	102360843:102360897:102368055:102368226:102372738:102372866,102360843:102360897:102368055:102368226:102375925:102376027,	102368056	102368226	102368104	102368104	Nonsense_Mutation	G	T	p.E301*
PAAD	TCGA-IB-7651-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43692241:43692419:43693913:43694048:43695880:43695997,	43693914	43694048	43693986	43693986	Nonsense_Mutation	C	T	p.R558*
PAAD	TCGA-IB-7651-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000567322.1,ENST00000287463.4	chr16	30665550:30665660:30665949:30666535:30666671:30666741,	30665950	30666535	30666168	30666168	Nonsense_Mutation	C	T	p.Q293*
PAAD	TCGA-IB-7651-01	WFDC1	ENST00000568638.1,ENST00000219454.5,ENST00000567056.1	chr16	84353039:84353177:84358024:84358066:84360487:84360561,	84358025	84358066	84358039	84358039	Nonsense_Mutation	C	T	p.R193*
PAAD	TCGA-IB-7651-01	CYP4F2	ENST00000221700.6,ENST00000392846.3,ENST00000592710.1	chr19	15990446:15990478:15990573:15990707:15996733:15996835,	15990574	15990707	15990671	15990671	Nonsense_Mutation	G	T	p.C384*
PAAD	TCGA-IB-7651-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42862295:42862459:42862938:42863106:42863249:42863394,	42862939	42863106	42863068	42863068	Nonsense_Mutation	G	T	p.G1769*
PAAD	TCGA-IB-7651-01	ZNF480	ENST00000335090.6	chr19	52817405:52817532:52819086:52819215:52824831:52824900,52803646:52803737:52819086:52819215:52824831:52824900,	52819087	52819215	52819145	52819145	Nonsense_Mutation	G	A	p.W86*
PAAD	TCGA-IB-7651-01	ZFP28	ENST00000301318.3	chr19	57061435:57061550:57061878:57061974:57065052:57068169,	57061879	57061974	57061959	57061959	Nonsense_Mutation	G	T	p.G295*
PAAD	TCGA-IB-7651-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6843145:6843177:6848008:6848125:6850680:6850768,	6848009	6848125	6848025	6848025	Nonsense_Mutation	G	T	p.E677*
PAAD	TCGA-IB-7651-01	ATP1A1	ENST00000369494.1,ENST00000537345.1,ENST00000418797.1,ENST00000295598.5,ENST00000369496.4	chr1	116927404:116927464:116929909:116930113:116930752:116930777,	116929910	116930113	116930090	116930090	Nonsense_Mutation	G	T	p.E122*
PAAD	TCGA-IB-7651-01	RPS27	ENST00000368567.4,ENST00000493224.1,ENST00000477151.1	chr1	153963599:153963699:153964041:153964152:153964540:153964621,	153964042	153964152	153964128	153964128	Nonsense_Mutation	G	T	p.G68*
PAAD	TCGA-IB-7651-01	RHCE	ENST00000349438.4	chr1	25696957:25697031:25701839:25701919:25712201:25712335,25696957:25697031:25701839:25701919:25715466:25715604,	25701840	25701919	25701914	25701914	Nonsense_Mutation	C	T	p.W315*
PAAD	TCGA-IB-7651-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000358894.6,ENST00000455906.1,ENST00000415763.1,ENST00000326996.6,ENST00000471582.1,ENST00000422202.1	chr20	61957447:61957501:61958103:61958175:61959303:61959339,	61958104	61958175	61958146	61958146	Nonsense_Mutation	C	T	p.R1167*
PAAD	TCGA-IB-7651-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321120	152321120	Nonsense_Mutation	G	T	p.E1696*
PAAD	TCGA-IB-7651-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672574	186672574	Nonsense_Mutation	G	T	p.E6181*
PAAD	TCGA-IB-7651-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000426233.1,ENST00000540518.1,ENST00000236959.9	chr2	216209501:216209594:216211481:216211664:216213816:216213972,	216211482	216211664	216211553	216211553	Nonsense_Mutation	T	G	p.Y464*
PAAD	TCGA-IB-7651-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10114936:10115046:10116213:10116357:10119764:10119881,	10116214	10116357	10116274	10116274	Nonsense_Mutation	C	T	p.R926*
PAAD	TCGA-IB-7651-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000334686.6,ENST00000494598.1	chr3	155218491:155218583:155222343:155222415:155232511:155232673,	155222344	155222415	155222376	155222376	Nonsense_Mutation	G	A	p.R546*
PAAD	TCGA-IB-7651-01	ARPP21	ENST00000187397.4	chr3	35732416:35732497:35748465:35748574:35756930:35756968,35732416:35732497:35748465:35748574:35750460:35750562,	35748466	35748574	35748539	35748539	Nonsense_Mutation	C	T	p.R254*
PAAD	TCGA-IB-7651-01	SGCB	ENST00000506357.1	chr4	52898040:52898127:52899596:52899806:52904392:52904411,	52899597	52899806	52899737	52899737	Nonsense_Mutation	C	A	p.E35*
PAAD	TCGA-IB-7651-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8228996	8228996	Nonsense_Mutation	G	A	p.W525*
PAAD	TCGA-IB-7651-01	C4orf36	ENST00000504008.1,ENST00000295898.3,ENST00000506308.1,ENST00000473559.1	chr4	87809023:87809046:87809273:87809428:87811200:87811291,87809023:87809046:87809273:87809428:87812608:87812746,	87809274	87809428	87809352	87809352	Nonsense_Mutation	C	A	p.E48*
PAAD	TCGA-IB-7651-01	POLK	ENST00000509126.1	chr5	74886177:74886265:74892046:74893003:74893571:74893614,	74892047	74893003	74892094	74892094	Nonsense_Mutation	C	T	p.Q526*
PAAD	TCGA-IB-7651-01	SGCE	ENST00000437425.2	chr7	94252639:94252709:94257513:94257671:94285301:94285410,	94257514	94257671	94257604	94257604	Nonsense_Mutation	C	T	p.W100*
PAAD	TCGA-IB-7651-01	C5	ENST00000223642.1	chr9	123751845:123752058:123753468:123753558:123758517:123758578,	123753469	123753558	123753544	123753544	Nonsense_Mutation	G	A	p.R956*
PAAD	TCGA-IB-7651-01	SLC2A8	ENST00000477027.1,ENST00000430147.1	chr9	130167096:130167270:130167698:130167844:130169390:130169570,130167096:130167270:130167698:130167844:130169714:130169809,	130167699	130167844	130167730	130167730	Nonsense_Mutation	G	A	p.W394*
PAAD	TCGA-IB-7652-01	ASB1	ENST00000264607.4	chr2	239335669:239335760:239342194:239342336:239352982:239353016,239335669:239335760:239342194:239342336:239344351:239344522,	239342195	239342336	239342283	239342283	Nonsense_Mutation	C	G	p.Y46*
PAAD	TCGA-IB-7887-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408064	130408064	Nonsense_Mutation	G	A	p.R1290*
PAAD	TCGA-IB-7888-01	DNAH2	ENST00000574518.1,ENST00000389173.2,ENST00000572933.1	chr17	7680096:7680207:7680763:7680952:7681394:7681498,	7680764	7680952	7680922	7680922	Nonsense_Mutation	G	A	p.W1739*
PAAD	TCGA-IB-7891-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131315	202131315	Nonsense_Mutation	G	T	p.E36*
PAAD	TCGA-IB-7891-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131315	202131315	Nonsense_Mutation	G	T	p.E36*
PAAD	TCGA-IB-7897-01	KLHDC4	ENST00000564396.1	chr16	87788799:87788860:87790027:87790083:87795554:87795622,87788803:87788898:87790027:87790083:87795554:87795622,	87790028	87790083	87790046	87790046	Nonsense_Mutation	C	A	p.E77*
PAAD	TCGA-IB-7897-01	KLHDC4	ENST00000567298.1,ENST00000347925.5,ENST00000270583.5,ENST00000561825.1	chr16	87788803:87788898:87790004:87790083:87795554:87795622,	87790005	87790083	87790046	87790046	Nonsense_Mutation	C	A	p.E77*
PAAD	TCGA-IB-7897-01	KLHDC4	ENST00000566661.1	chr16	87782404:87782415:87788799:87790083:87795554:87795622,	87788800	87790083	87790046	87790046	Nonsense_Mutation	C	A	p.E77*
PAAD	TCGA-IB-7897-01	FOXP2	ENST00000393489.3,ENST00000403559.4,ENST00000350908.4,ENST00000393494.2,ENST00000393498.2,ENST00000408937.3	chr7	114293980:114294064:114298120:114298322:114299410:114299487,	114298121	114298322	114298280	114298280	Nonsense_Mutation	C	T	p.R476*
PAAD	TCGA-IB-8126-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157130	106157130	Nonsense_Mutation	T	A	p.C677*
PAAD	TCGA-IB-8127-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174815006	174815006	Nonsense_Mutation	C	A	p.S157*
PAAD	TCGA-IB-A6UF-01	C3	ENST00000599668.1,ENST00000599899.1,ENST00000245907.6	chr19	6677877:6678034:6678162:6678298:6678382:6678466,	6678163	6678298	6678284	6678284	Nonsense_Mutation	G	A	p.Q1577*
PAAD	TCGA-IB-A6UF-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000366576.3	chr1	237054432:237054629:237057656:237057857:237058657:237058850,	237057657	237057857	237057764	237057764	Nonsense_Mutation	C	A	p.C1104*
PAAD	TCGA-IB-A6UG-01	PDS5B	ENST00000450460.1,ENST00000498550.1,ENST00000315596.10	chr13	33252971:33253066:33258014:33258160:33261270:33261422,	33258015	33258160	33258137	33258137	Nonsense_Mutation	A	T	p.R394*
PAAD	TCGA-IB-A7M4-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944227	235944227	Nonsense_Mutation	G	A	p.R1718*
PAAD	TCGA-IB-A7M4-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141148	167141148	Nonsense_Mutation	G	A	p.R597*
PAAD	TCGA-IB-A7M4-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141148	167141148	Nonsense_Mutation	G	A	p.R597*
PAAD	TCGA-IB-A7M4-01	LRBA	ENST00000510413.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000515096.1,ENST00000510157.1,ENST00000357115.3	chr4	151186793:151186964:151199004:151199156:151203601:151203795,	151199005	151199156	151199141	151199141	Nonsense_Mutation	G	A	p.R2789*
PAAD	TCGA-IB-AAUO-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24831899	24831899	Nonsense_Mutation	G	T	p.E1234*
PAAD	TCGA-IB-AAUP-01	HERPUD1	ENST00000563781.1,ENST00000300302.5,ENST00000564678.1,ENST00000379792.2,ENST00000439977.2	chr16	56970635:56970729:56973806:56974157:56976043:56976114,56973160:56973271:56973806:56974157:56976043:56976114,	56973807	56974157	56973916	56973916	Nonsense_Mutation	G	T	p.E222*
PAAD	TCGA-IB-AAUP-01	HERPUD1	ENST00000570273.1	chr16	56973160:56973271:56973806:56974000:56976043:56976114,	56973807	56974000	56973916	56973916	Nonsense_Mutation	G	T	p.E222*
PAAD	TCGA-IB-AAUT-01	CYP2F1	ENST00000331105.2,ENST00000531409.1,ENST00000532164.2	chr19	41622359:41622522:41626251:41626401:41627362:41627523,	41626252	41626401	41626275	41626275	Nonsense_Mutation	C	T	p.R120*
PAAD	TCGA-IB-AAUU-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236761177:236761279:236762782:236762924:236766459:236766676,	236762783	236762924	236762848	236762848	Nonsense_Mutation	G	A	p.R146*
PAAD	TCGA-LB-A7SX-01	FLT3LG	ENST00000600429.1,ENST00000596435.1,ENST00000597551.1,ENST00000204637.2,ENST00000600084.1,ENST00000594009.1,ENST00000595510.1,ENST00000601800.1	chr19	49982219:49982304:49983554:49983733:49983808:49983877,	49983555	49983733	49983561	49983561	Nonsense_Mutation	C	G	p.S163*
PAAD	TCGA-LB-A8F3-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204411653:204411761:204412544:204412725:204413195:204413290,	204412545	204412725	204412697	204412697	Nonsense_Mutation	G	A	p.Q966*
PAAD	TCGA-OE-A75W-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72055521	72055521	Nonsense_Mutation	C	A	p.S311*
PAAD	TCGA-OE-A75W-01	MND1	ENST00000509752.1,ENST00000240488.3,ENST00000504860.1	chr4	154315413:154315488:154318370:154318485:154330122:154330167,	154318371	154318485	154318479	154318479	Nonsense_Mutation	G	T	p.E139*
PAAD	TCGA-Q3-A5QY-01	KCNH1	ENST00000271751.4,ENST00000367007.4	chr1	211256121:211256240:211263903:211264032:211276837:211276944,	211263904	211264032	211263994	211263994	Nonsense_Mutation	G	A	p.R117*
PAAD	TCGA-US-A774-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148657026:148657136:148657312:148657467:148672759:148672903,	148657313	148657467	148657443	148657443	Nonsense_Mutation	C	A	p.Y168*
PAAD	TCGA-XD-AAUL-01	RNF34	ENST00000392464.2,ENST00000361234.5,ENST00000392465.3	chr12	121853961:121854180:121855306:121855714:121858044:121858137,	121855307	121855714	121855430	121855430	Nonsense_Mutation	C	T	p.R117*
PAAD	TCGA-YB-A89D-01	RAP1B	ENST00000250559.9,ENST00000540209.1,ENST00000539091.1,ENST00000543393.1,ENST00000463493.1,ENST00000537460.1,ENST00000378985.3,ENST00000538980.1,ENST00000535492.1,ENST00000450214.2,ENST00000393436.5,ENST00000341355.5	chr12	69047904:69048032:69050085:69050229:69050880:69050919,	69050086	69050229	69050210	69050210	Nonsense_Mutation	C	A	p.S150*
PAAD	TCGA-YB-A89D-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	75022205:75022396:75052556:75052821:75070337:75070408,	75052557	75052821	75052666	75052666	Nonsense_Mutation	C	A	p.E241*
PAAD	TCGA-YB-A89D-01	CNRIP1	ENST00000263655.3,ENST00000481714.1	chr2	68520197:68521158:68544288:68544439:68546353:68546454,	68544289	68544439	68544303	68544303	Nonsense_Mutation	G	A	p.Q106*
PAAD	TCGA-YY-A8LH-01	PSMB4	ENST00000495805.1,ENST00000495288.1	chr1	151372065:151372203:151372456:151372663:151372917:151373064,	151372457	151372663	151372581	151372581	Nonsense_Mutation	C	T	p.R89*
PAAD	TCGA-YY-A8LH-01	PSMB4	ENST00000493673.1	chr1	151372065:151372203:151372456:151372661:151372917:151373064,	151372457	151372661	151372581	151372581	Nonsense_Mutation	C	T	p.R89*
PAAD	TCGA-Z5-AAPL-01	VPS13A	ENST00000376636.3,ENST00000360280.3	chr9	79985941:79986065:79996891:79997003:80018151:80018237,	79996892	79997003	79996923	79996923	Nonsense_Mutation	C	T	p.R3037*
PCPG	TCGA-QR-A70V-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
PCPG	TCGA-SR-A6MP-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144891006	144891006	Nonsense_Mutation	G	A	p.Q630X
PCPG	TCGA-SP-A6QI-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000430533.1,ENST00000468045.1	chr2	27354877:27354950:27355097:27355271:27355470:27355488,	27355098	27355271	27355237	27355237	Nonsense_Mutation	G	A	p.R263X
PCPG	TCGA-WB-A81V-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29654516:29654857:29657313:29657516:29661855:29662049,	29657314	29657516	29657338	29657338	Nonsense_Mutation	T	A	p.C1878X
PCPG	TCGA-RW-A68G-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249360	45249360	Nonsense_Mutation	A	T	p.Y58X
PCPG	TCGA-QR-A6GX-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
PCPG	TCGA-SR-A6MS-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911240	29911240	Nonsense_Mutation	T	A	p.L180X
PCPG	TCGA-S7-A7X1-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453329	195453329	Nonsense_Mutation	C	T	p.R448X
PCPG	TCGA-SQ-A6I6-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249360	45249360	Nonsense_Mutation	A	T	p.Y58X
PCPG	TCGA-QR-A70Q-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249360	45249360	Nonsense_Mutation	A	T	p.Y58X
PCPG	TCGA-QR-A70U-01	DOCK4	ENST00000428084.1,ENST00000423057.2,ENST00000437633.1	chr7	111474643:111474742:111484818:111484953:111487054:111487182,	111484819	111484953	111484935	111484935	Nonsense_Mutation	C	A	p.E874X
PCPG	TCGA-QR-A70U-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249360	45249360	Nonsense_Mutation	A	T	p.Y58X
PCPG	TCGA-WB-A80V-01	CYP4A11	ENST00000468629.1,ENST00000462347.1,ENST00000371905.1,ENST00000474458.1,ENST00000475477.1,ENST00000465874.1,ENST00000371904.4,ENST00000310638.4,ENST00000457840.2	chr1	47401221:47401319:47402335:47402463:47402973:47403018,	47402336	47402463	47402419	47402419	Nonsense_Mutation	G	A	p.R143X
PCPG	TCGA-SR-A6MY-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911240	29911240	Nonsense_Mutation	T	A	p.L180X
PCPG	TCGA-QR-A70K-01	KLRD1	ENST00000336164.4,ENST00000543420.1,ENST00000344825.6,ENST00000381907.4,ENST00000539374.1,ENST00000381908.3	chr12	10460648:10460683:10461986:10462079:10462224:10462287,	10461987	10462079	10462061	10462061	Nonsense_Mutation	G	T	p.G28X
PCPG	TCGA-RW-A67W-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249360	45249360	Nonsense_Mutation	A	T	p.Y58X
PCPG	TCGA-QT-A5XK-01	PSMA7	ENST00000370873.4,ENST00000484488.1,ENST00000370858.3	chr20	60714836:60714961:60715873:60716000:60718263:60718486,	60715874	60716000	60715937	60715937	Nonsense_Mutation	G	A	p.Q54X
PCPG	TCGA-QR-A70P-01	RNF10	ENST00000540046.1,ENST00000545419.1,ENST00000546262.1,ENST00000413266.2,ENST00000325954.4,ENST00000535395.1	chr12	121001618:121001746:121002874:121002992:121003230:121003330,	121002875	121002992	121002881	121002881	Nonsense_Mutation	C	T	p.R558X
PCPG	TCGA-SR-A6MT-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249360	45249360	Nonsense_Mutation	A	T	p.Y58X
PCPG	TCGA-PR-A5PH-01	LMNA	ENST00000498722.2,ENST00000496738.1,ENST00000368299.3,ENST00000508500.1,ENST00000361308.4,ENST00000368297.1,ENST00000448611.2,ENST00000347559.2,ENST00000368301.2,ENST00000392353.3,ENST00000368300.4,ENST00000473598.2	chr1	156105877:156105912:156106004:156106227:156106711:156106819,	156106005	156106227	156106111	156106111	Nonsense_Mutation	G	T	p.E422X
PCPG	TCGA-S7-A7WT-01	CDC27	ENST00000570818.1,ENST00000066544.3,ENST00000526866.1,ENST00000527547.1,ENST00000533415.1,ENST00000525495.2,ENST00000446365.2,ENST00000531206.1	chr17	45232120:45232152:45234278:45234490:45234595:45234633,	45234279	45234490	45234411	45234411	Nonsense_Mutation	G	T	p.S237X
PCPG	TCGA-RW-A67V-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453329	195453329	Nonsense_Mutation	C	T	p.R448X
PCPG	TCGA-QR-A70O-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249360	45249360	Nonsense_Mutation	A	T	p.Y58X
PCPG	TCGA-RM-A68T-01	PLEKHA7	ENST00000525581.1,ENST00000531079.1,ENST00000355661.3,ENST00000525049.1,ENST00000530489.1,ENST00000525781.1,ENST00000531066.1,ENST00000448080.2	chr11	16822571:16822622:16823214:16823364:16824518:16824599,	16823215	16823364	16823313	16823313	Nonsense_Mutation	G	A	p.R737*
PCPG	TCGA-SP-A6QI-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000430533.1,ENST00000468045.1	chr2	27354877:27354950:27355097:27355271:27355470:27355488,	27355098	27355271	27355237	27355237	Nonsense_Mutation	G	A	p.R263*
PCPG	TCGA-SR-A6MP-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144891006	144891006	Nonsense_Mutation	G	A	p.Q630*
PCPG	TCGA-WB-A81V-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29654516:29654857:29657313:29657516:29661855:29662049,	29657314	29657516	29657338	29657338	Nonsense_Mutation	T	A	p.C1878*
PCPG	TCGA-WB-A80V-01	CYP4A11	ENST00000468629.1,ENST00000462347.1,ENST00000371905.1,ENST00000474458.1,ENST00000475477.1,ENST00000465874.1,ENST00000371904.4,ENST00000310638.4,ENST00000457840.2	chr1	47401221:47401319:47402335:47402463:47402973:47403018,	47402336	47402463	47402419	47402419	Nonsense_Mutation	G	A	p.R143*
PCPG	TCGA-QR-A70J-01	ROCK2	ENST00000401753.1,ENST00000493096.1,ENST00000315872.6	chr2	11332801:11332838:11333904:11333983:11334381:11334470,	11333905	11333983	11333967	11333967	Nonsense_Mutation	G	A	p.R1209*
PCPG	TCGA-QT-A5XK-01	PSMA7	ENST00000370873.4,ENST00000484488.1,ENST00000370858.3	chr20	60714836:60714961:60715873:60716000:60718263:60718486,	60715874	60716000	60715937	60715937	Nonsense_Mutation	G	A	p.Q54*
PCPG	TCGA-QR-A6GW-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384207	109384207	Nonsense_Mutation	G	A	p.W2404*
PCPG	TCGA-RW-A686-06	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263681	1263681	Nonsense_Mutation	C	A	p.C1860*
PCPG	TCGA-QR-A70P-01	RNF10	ENST00000540046.1,ENST00000545419.1,ENST00000546262.1,ENST00000413266.2,ENST00000325954.4,ENST00000535395.1	chr12	121001618:121001746:121002874:121002992:121003230:121003330,	121002875	121002992	121002881	121002881	Nonsense_Mutation	C	T	p.R558*
PCPG	TCGA-QR-A703-01	PTCH2	ENST00000447098.2	chr1	45285515:45286376:45288273:45288341:45288740:45288840,	45288274	45288341	45288335	45288335	Nonsense_Mutation	G	A	p.Q1122*
PCPG	TCGA-W2-A7H7-01	GON4L	ENST00000437809.1,ENST00000271883.5	chr1	155722229:155722378:155722994:155723205:155724165:155724279,	155722995	155723205	155723052	155723052	Nonsense_Mutation	C	A	p.E1929*
PCPG	TCGA-QR-A6GU-01	CDK19	ENST00000323817.3,ENST00000368911.3,ENST00000413605.2	chr6	110935470:110935869:110942306:110942573:110943290:110943369,	110942307	110942573	110942543	110942543	Nonsense_Mutation	G	A	p.Q381*
PCPG	TCGA-QR-A70K-01	KLRD1	ENST00000336164.4,ENST00000543420.1,ENST00000344825.6,ENST00000381907.4,ENST00000539374.1,ENST00000381908.3	chr12	10460648:10460683:10461986:10462079:10462224:10462287,	10461987	10462079	10462061	10462061	Nonsense_Mutation	G	T	p.G28*
PCPG	TCGA-PR-A5PH-01	LMNA	ENST00000498722.2,ENST00000496738.1,ENST00000368299.3,ENST00000508500.1,ENST00000361308.4,ENST00000368297.1,ENST00000448611.2,ENST00000347559.2,ENST00000368301.2,ENST00000392353.3,ENST00000368300.4,ENST00000473598.2	chr1	156105877:156105912:156106004:156106227:156106711:156106819,	156106005	156106227	156106111	156106111	Nonsense_Mutation	G	T	p.E422*
PCPG	TCGA-QR-A70U-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41043649:41043928:41045769:41045895:41047244:41047370,	41045770	41045895	41045776	41045776	Nonsense_Mutation	C	T	p.Q1189*
PCPG	TCGA-QR-A70U-01	DOCK4	ENST00000428084.1,ENST00000423057.2,ENST00000437633.1	chr7	111474643:111474742:111484818:111484953:111487054:111487182,	111484819	111484953	111484935	111484935	Nonsense_Mutation	C	A	p.E874*
PRAD	TCGA-G9-7525-01	TGM7	ENST00000452443.2	chr15	43577011:43577150:43579477:43579655:43579738:43579867,	43579478	43579655	43579553	43579553	Nonsense_Mutation	G	A	p.Q264X
PRAD	TCGA-G9-6338-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748753	43748753	Nonsense_Mutation	T	A	p.K685X
PRAD	TCGA-G9-6338-01	NCAPG2	ENST00000449727.2,ENST00000409423.1,ENST00000409339.3,ENST00000467785.1,ENST00000356309.3,ENST00000432615.1	chr7	158439151:158439255:158443523:158443664:158444984:158445101,	158443524	158443664	158443616	158443616	Nonsense_Mutation	G	A	p.Q995X
PRAD	TCGA-HC-7212-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469888	47469888	Nonsense_Mutation	G	A	p.R52X
PRAD	TCGA-HC-7212-01	NCOR1	ENST00000458113.2	chr17	15968798:15969008:15971207:15971435:15973478:15973612,15968798:15969005:15971207:15971435:15973478:15973612,	15971208	15971435	15971376	15971376	Nonsense_Mutation	G	A	p.Q1541X
PRAD	TCGA-HC-8261-01	CHGA	ENST00000334654.4	chr14	93398021:93398047:93398714:93399196:93401145:93401294,93396063:93396160:93398714:93399196:93401145:93401294,	93398715	93399196	93399080	93399080	Nonsense_Mutation	C	T	p.R392X
PRAD	TCGA-HC-8261-01	SHROOM3	ENST00000296043.6	chr4	77675463:77676345:77677601:77678090:77680697:77680848,	77677602	77678090	77677870	77677870	Nonsense_Mutation	C	T	p.Q1660X
PRAD	TCGA-EJ-7317-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000514617.1,ENST00000507873.2,ENST00000502925.1	chr4	48550706:48550810:48551489:48551640:48552608:48552721,	48551490	48551640	48551612	48551612	Nonsense_Mutation	C	T	p.W1554X
PRAD	TCGA-KK-A59V-01	CCDC178	ENST00000402325.1,ENST00000581524.1	chr18	30517974:30518055:30554510:30554645:30672724:30672874,30517974:30518055:30554510:30554645:30791859:30792019,	30554511	30554645	30554609	30554609	Nonsense_Mutation	G	A	p.Q809X
PRAD	TCGA-KK-A59V-01	FBXW9	ENST00000393261.3,ENST00000544494.1,ENST00000587296.1,ENST00000380339.3,ENST00000587955.1	chr19	12800029:12800104:12800185:12800251:12800354:12800444,	12800186	12800251	12800212	12800212	Nonsense_Mutation	G	A	p.R426X
PRAD	TCGA-KK-A59V-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223488990:223489198:223489432:223489494:223493555:223493607,	223489433	223489494	223489482	223489482	Nonsense_Mutation	G	A	p.R305X
PRAD	TCGA-KK-A59V-01	SPICE1	ENST00000496105.1,ENST00000295872.4	chr3	113179463:113179611:113184499:113184631:113186985:113187251,	113184500	113184631	113184565	113184565	Nonsense_Mutation	G	A	p.R408X
PRAD	TCGA-KK-A59V-01	LIMCH1	ENST00000511496.1	chr4	41600936:41601043:41607910:41608021:41615482:41615551,	41607911	41608021	41608016	41608016	Nonsense_Mutation	C	T	p.R161X
PRAD	TCGA-HC-7233-01	CSMD3	ENST00000343508.3,ENST00000297405.5,ENST00000339701.3,ENST00000352409.3	chr8	113314021:113314195:113316949:113317144:113318235:113318421,	113316950	113317144	113317094	113317094	Nonsense_Mutation	G	A	p.R2708X
PRAD	TCGA-G9-6494-01	HFM1	ENST00000430465.1	chr1	91781696:91781741:91781947:91782033:91784634:91784766,91781696:91781741:91781947:91782033:91784849:91784947,	91781948	91782033	91781959	91781959	Nonsense_Mutation	C	A	p.E963X
PRAD	TCGA-HC-7080-01	CPNE3	ENST00000523072.1,ENST00000521271.1,ENST00000198765.4	chr8	87544736:87544808:87549790:87549874:87552472:87552562,	87549791	87549874	87549807	87549807	Nonsense_Mutation	C	A	p.S159X
PRAD	TCGA-EJ-7785-01	SPTBN5	ENST00000320955.6	chr15	42162440:42162551:42162643:42162758:42163572:42163718,	42162644	42162758	42162706	42162706	Nonsense_Mutation	G	A	p.R1799X
PRAD	TCGA-EJ-5510-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1	chr3	64547253:64547427:64554043:64554211:64579933:64580110,	64554044	64554211	64554181	64554181	Nonsense_Mutation	G	A	p.Q1463X
PRAD	TCGA-EJ-5498-01	KYNU	ENST00000264170.4,ENST00000409512.1	chr2	143787195:143787248:143790804:143790890:143797996:143798227,	143790805	143790890	143790837	143790837	Nonsense_Mutation	C	T	p.R330X
PRAD	TCGA-G9-7519-01	LRRC1	ENST00000370888.1,ENST00000487251.1	chr6	53743790:53743869:53747684:53747774:53761295:53761352,	53747685	53747774	53747744	53747744	Nonsense_Mutation	C	A	p.S139X
PRAD	TCGA-HC-7820-01	CD38	ENST00000502843.1	chr4	15818218:15818263:15835839:15835925:15839714:15839788,	15835840	15835925	15835906	15835906	Nonsense_Mutation	G	A	p.W189X
PRAD	TCGA-CH-5739-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47266670:47266776:47269027:47269152:47273470:47273538,	47269028	47269152	47269054	47269054	Nonsense_Mutation	G	T	p.E383X
PRAD	TCGA-CH-5762-01	STK17A	ENST00000319357.5	chr7	43647854:43647999:43659195:43659322:43663170:43663219,	43659196	43659322	43659292	43659292	Nonsense_Mutation	C	T	p.R221X
PRAD	TCGA-EJ-5494-01	CTC1	ENST00000315684.8	chr17	8131866:8131947:8132044:8132210:8132619:8132723,8131866:8131947:8132044:8132210:8132459:8132524,	8132045	8132210	8132074	8132074	Nonsense_Mutation	G	A	p.Q1120X
PRAD	TCGA-HC-8265-01	MIB2	ENST00000378712.1,ENST00000505820.2,ENST00000357210.4,ENST00000520777.1,ENST00000487053.1,ENST00000489635.1,ENST00000504599.1,ENST00000511502.1,ENST00000355826.5,ENST00000518681.1	chr1	1560665:1560808:1562029:1562134:1562216:1562309,1560946:1561033:1562029:1562134:1562216:1562309,	1562030	1562134	1562115	1562115	Nonsense_Mutation	G	A	p.W468X
PRAD	TCGA-HC-8265-01	MIB2	ENST00000486072.1	chr1	1560946:1561033:1561746:1562134:1562216:1562309,	1561747	1562134	1562115	1562115	Nonsense_Mutation	G	A	p.W468X
PRAD	TCGA-HC-8265-01	MIB2	ENST00000479659.1	chr1	1560665:1560808:1560925:1562134:1562216:1562309,	1560926	1562134	1562115	1562115	Nonsense_Mutation	G	A	p.W468X
PRAD	TCGA-HC-8265-01	MYB	ENST00000525514.1,ENST00000533384.1,ENST00000525940.1,ENST00000529586.1,ENST00000526889.1,ENST00000525369.1,ENST00000526187.1,ENST00000531634.1,ENST00000534121.1,ENST00000528015.1,ENST00000531737.1,ENST00000533837.1,ENST00000442647.2,ENST00000529262.1,ENST00000531519.1,ENST00000526565.1,ENST00000528774.1,ENST00000438901.2,ENST00000528343.1,ENST00000534044.1,ENST00000339290.5,ENST00000463282.2,ENST00000341911.5,ENST00000527615.1,ENST00000430686.2,ENST00000533624.1,ENST00000525002.1,ENST00000367814.4,ENST00000531845.1,ENST00000367812.2,ENST00000528140.1,ENST00000525477.1,ENST00000533808.1,ENST00000526320.1,ENST00000316528.8	chr6	135507155:135507158:135508971:135509043:135510928:135511021,	135508972	135509043	135509019	135509019	Nonsense_Mutation	G	A	p.W63X
PRAD	TCGA-HC-A6AS-01	TPCN2	ENST00000294309.3,ENST00000542467.1	chr11	68822188:68822265:68822642:68822820:68825045:68825162,	68822643	68822820	68822730	68822730	Nonsense_Mutation	C	A	p.Y113X
PRAD	TCGA-EJ-8472-01	CYP2C8	ENST00000490994.2	chr10	96826964:96827114:96827285:96827448:96828991:96829160,96826964:96827114:96827285:96827448:96828953:96829184,	96827286	96827448	96827286	96827286	Nonsense_Mutation	C	A	p.G111X
PRAD	TCGA-EJ-8472-01	CYP2F1	ENST00000331105.2,ENST00000531409.1,ENST00000532164.2	chr19	41622359:41622522:41626251:41626401:41627362:41627523,	41626252	41626401	41626275	41626275	Nonsense_Mutation	C	T	p.R120X
PRAD	TCGA-HC-7750-01	OTUB1	ENST00000422031.2,ENST00000428192.2,ENST00000543004.1,ENST00000543988.1,ENST00000538426.1,ENST00000535715.1	chr11	63764001:63764120:63764328:63764413:63764521:63764716,	63764329	63764413	63764357	63764357	Nonsense_Mutation	G	T	p.E123X
PRAD	TCGA-EJ-8474-01	HNRNPD	ENST00000503822.1,ENST00000543098.1,ENST00000352301.4	chr4	83279910:83279973:83280623:83280792:83292680:83292737,83279910:83279973:83280623:83280792:83294598:83294639,	83280624	83280792	83280638	83280638	Nonsense_Mutation	C	A	p.E149X
PRAD	TCGA-HC-7752-01	CCDC57	ENST00000389641.4,ENST00000327026.3,ENST00000419322.2,ENST00000392347.1,ENST00000392343.3	chr17	80115623:80115824:80121075:80121233:80129576:80129608,	80121076	80121233	80121090	80121090	Nonsense_Mutation	G	A	p.R676X
PRAD	TCGA-HC-7752-01	MRPL47	ENST00000259038.2	chr3	179319517:179319578:179320439:179320525:179322314:179322428,	179320440	179320525	179320488	179320488	Nonsense_Mutation	C	A	p.E66X
PRAD	TCGA-CH-5767-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539834	120539834	Nonsense_Mutation	A	T	p.C179X
PRAD	TCGA-QU-A6IM-01	NRG1	ENST00000405005.3,ENST00000521670.1,ENST00000522402.1	chr8	32585466:32585596:32599525:32599593:32600192:32600251,32585466:32585596:32599525:32599593:32611889:32611941,	32599526	32599593	32599590	32599590	Nonsense_Mutation	G	T	p.E233X
PRAD	TCGA-G9-6362-01	ATG10	ENST00000458350.3,ENST00000504770.1,ENST00000282185.3,ENST00000513634.1	chr5	81283377:81283497:81354313:81354421:81443008:81443323,81283377:81283497:81354313:81354421:81460217:81460356,	81354314	81354421	81354375	81354375	Nonsense_Mutation	C	G	p.S57X
PRAD	TCGA-CH-5765-01	CLIP1	ENST00000537178.1	chr12	122821178:122821295:122825299:122826244:122837272:122837333,	122825300	122826244	122825728	122825728	Nonsense_Mutation	C	A	p.E675X
PRAD	TCGA-CH-5765-01	CLIP1	ENST00000361654.4	chr12	122821178:122821295:122825527:122826244:122837272:122837333,	122825528	122826244	122825728	122825728	Nonsense_Mutation	C	A	p.E675X
PRAD	TCGA-HC-7749-01	ATXN3	ENST00000556374.1,ENST00000554214.1,ENST00000556958.1,ENST00000553686.1,ENST00000557311.1,ENST00000393287.5,ENST00000556671.1,ENST00000553491.1,ENST00000553570.1,ENST00000555958.1,ENST00000340660.6,ENST00000556315.1,ENST00000553287.1,ENST00000555381.1,ENST00000359366.5,ENST00000545170.1,ENST00000515746.1,ENST00000556288.1,ENST00000553498.1,ENST00000556898.1,ENST00000556220.1,ENST00000554592.1,ENST00000556274.1,ENST00000502250.1,ENST00000553488.1,ENST00000429774.2,ENST00000554672.1,ENST00000532032.1,ENST00000554673.1,ENST00000554491.1,ENST00000506466.1,ENST00000554994.1,ENST00000554350.1,ENST00000503767.1,ENST00000553309.1	chr14	92547366:92547405:92548643:92548810:92549469:92549579,	92548644	92548810	92548749	92548749	Nonsense_Mutation	C	A	p.E224X
PRAD	TCGA-G9-6384-01	KIAA0556	ENST00000261588.4	chr16	27561472:27561498:27585221:27585277:27629745:27629822,	27585222	27585277	27585275	27585275	Nonsense_Mutation	G	T	p.E21X
PRAD	TCGA-G9-6384-01	CD1B	ENST00000368168.3	chr1	158299324:158299438:158299641:158299920:158300585:158300815,	158299642	158299920	158299693	158299693	Nonsense_Mutation	G	A	p.R186X
PRAD	TCGA-EJ-5531-01	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146824230	146824230	Nonsense_Mutation	G	A	p.Q61X
PRAD	TCGA-EJ-7782-01	IL4R	ENST00000380922.3,ENST00000568746.1,ENST00000395762.2,ENST00000543915.2,ENST00000563886.1,ENST00000170630.2,ENST00000565915.1	chr16	27370236:27370315:27372086:27372136:27373572:27373617,	27372087	27372136	27372111	27372111	Nonsense_Mutation	C	T	p.R292X
PRAD	TCGA-EJ-7782-01	CIRBP	ENST00000413636.2,ENST00000588230.1,ENST00000591659.1,ENST00000589235.1,ENST00000587323.1,ENST00000586472.1,ENST00000585913.1,ENST00000589710.1,ENST00000589266.1,ENST00000588090.1,ENST00000586773.1,ENST00000591935.1,ENST00000585630.1,ENST00000588030.1,ENST00000588411.1,ENST00000589660.1,ENST00000586548.1,ENST00000589686.1,ENST00000320936.5,ENST00000586636.1,ENST00000585914.1,ENST00000587896.1	chr19	1270926:1271035:1271138:1271245:1271327:1271360,	1271139	1271245	1271165	1271165	Nonsense_Mutation	C	T	p.Q44X
PRAD	TCGA-EJ-7782-01	CIRBP	ENST00000590171.1,ENST00000591097.1	chr19	1270926:1271035:1271119:1271245:1271327:1271360,	1271120	1271245	1271165	1271165	Nonsense_Mutation	C	T	p.Q44X
PRAD	TCGA-EJ-7330-01	KCNAB1	ENST00000490337.1,ENST00000302490.8,ENST00000461717.1,ENST00000475456.1,ENST00000489036.1,ENST00000497291.1,ENST00000471742.1	chr3	156183431:156183475:156192522:156192609:156232152:156232180,	156192523	156192609	156192555	156192555	Nonsense_Mutation	G	T	p.E202X
PRAD	TCGA-EJ-7330-01	KCNAB1	ENST00000476362.1	chr3	156183431:156183475:156192438:156192609:156232152:156232180,	156192439	156192609	156192555	156192555	Nonsense_Mutation	G	T	p.E202X
PRAD	TCGA-HC-7231-01	CPPED1	ENST00000381774.4	chr16	12758635:12758972:12798480:12798906:12875041:12875260,	12798481	12798906	12798661	12798661	Nonsense_Mutation	G	A	p.Q179X
PRAD	TCGA-EJ-A65B-01	ABCC6	ENST00000205557.7	chr16	16255294:16255421:16256849:16257049:16259479:16259635,	16256850	16257049	16256866	16256866	Nonsense_Mutation	G	A	p.R1164X
PRAD	TCGA-J4-A67S-01	ERMAP	ENST00000372514.3,ENST00000372517.2	chr1	43296114:43296204:43296438:43296786:43300708:43300825,	43296439	43296786	43296726	43296726	Nonsense_Mutation	C	T	p.R125X
PRAD	TCGA-HC-7209-01	LDB3	ENST00000372056.4,ENST00000429277.2	chr10	88441192:88441560:88446825:88447029:88451652:88451822,	88446826	88447029	88447004	88447004	Nonsense_Mutation	C	T	p.Q290X
PRAD	TCGA-EJ-7788-01	RALBP1	ENST00000019317.4,ENST00000383432.3	chr18	9516842:9517301:9522157:9522507:9524591:9524753,	9522158	9522507	9522268	9522268	Nonsense_Mutation	C	T	p.R272X
PRAD	TCGA-J9-A52C-01	AP1G2	ENST00000465445.2,ENST00000397120.3,ENST00000308724.5,ENST00000555510.1,ENST00000535852.2,ENST00000460049.2	chr14	24030720:24030844:24031170:24031275:24031496:24031615,	24031171	24031275	24031220	24031220	Nonsense_Mutation	G	A	p.Q562X
PRAD	TCGA-J9-A52C-01	MFGE8	ENST00000558029.1,ENST00000566497.1,ENST00000268151.7,ENST00000268150.8	chr15	89450425:89450607:89453022:89453154:89456477:89456490,	89453023	89453154	89453092	89453092	Nonsense_Mutation	G	A	p.R46X
PRAD	TCGA-J9-A52C-01	RHBDL3	ENST00000431505.2	chr17	30621363:30621461:30625110:30625223:30632359:30632460,30621363:30621461:30625110:30625223:30643250:30643293,	30625111	30625223	30625115	30625115	Nonsense_Mutation	G	T	p.E225X
PRAD	TCGA-J9-A52C-01	VPS52	ENST00000464425.1	chr6	33236275:33236426:33236790:33236995:33237266:33237334,	33236791	33236995	33236870	33236870	Nonsense_Mutation	G	A	p.R157X
PRAD	TCGA-J9-A52C-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000463486.1,ENST00000478934.1,ENST00000445902.2	chr6	33236275:33236426:33236790:33236966:33237266:33237334,	33236791	33236966	33236870	33236870	Nonsense_Mutation	G	A	p.R157X
PRAD	TCGA-J9-A52C-01	VEGFA	ENST00000519767.1	chr6	43746625:43746655:43748468:43748540:43749692:43749789,43746625:43746655:43748468:43748540:43752277:43752295,	43748469	43748540	43748503	43748503	Nonsense_Mutation	C	T	p.R333X
PRAD	TCGA-J9-A52C-01	VEGFA	ENST00000523873.1,ENST00000372055.4	chr6	43746625:43746655:43748468:43748591:43749692:43749789,	43748469	43748591	43748503	43748503	Nonsense_Mutation	C	T	p.R333X
PRAD	TCGA-J9-A52C-01	VEGFA	ENST00000518689.1,ENST00000413642.3	chr6	43746625:43746655:43748468:43748522:43749692:43749789,	43748469	43748522	43748503	43748503	Nonsense_Mutation	C	T	p.R333X
PRAD	TCGA-J9-A52C-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PRAD	TCGA-J9-A52C-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
PRAD	TCGA-G9-6354-01	GMPR2	ENST00000559409.1	chr14	24702424:24702546:24702684:24702792:24704942:24705022,	24702685	24702792	24702732	24702732	Nonsense_Mutation	C	A	p.Y63X
PRAD	TCGA-G9-6354-01	GMPR2	ENST00000558701.1,ENST00000559287.1,ENST00000559102.1	chr14	24702424:24702546:24702684:24702799:24704942:24705022,	24702685	24702799	24702732	24702732	Nonsense_Mutation	C	A	p.Y63X
PRAD	TCGA-G9-6354-01	GMPR2	ENST00000456667.3	chr14	24702424:24702546:24702684:24702804:24704942:24705022,24702424:24702546:24702684:24702804:24705172:24705211,	24702685	24702804	24702732	24702732	Nonsense_Mutation	C	A	p.Y63X
PRAD	TCGA-EJ-5521-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17617221:17617374:17622441:17622564:17623623:17623772,	17622442	17622564	17622555	17622555	Nonsense_Mutation	T	A	p.K258X
PRAD	TCGA-J4-A67L-01	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146823320	146823320	Nonsense_Mutation	G	C	p.S364X
PRAD	TCGA-G9-6329-01	PKD2L1	ENST00000318222.3,ENST00000528248.1,ENST00000338519.3	chr10	102048152:102048235:102048728:102048813:102049771:102049895,	102048729	102048813	102048747	102048747	Nonsense_Mutation	G	A	p.Q773X
PRAD	TCGA-HI-7168-01	TELO2	ENST00000569744.1,ENST00000262319.6	chr16	1555441:1555602:1556238:1556330:1556952:1556972,	1556239	1556330	1556317	1556317	Nonsense_Mutation	C	T	p.Q705X
PRAD	TCGA-KK-A6E4-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000342992.6,ENST00000460472.2	chr2	179393000:179393154:179393254:179393946:179394686:179394843,	179393255	179393946	179393601	179393601	Nonsense_Mutation	A	C	p.L35626X
PRAD	TCGA-CH-5772-01	ADAM15	ENST00000271836.6,ENST00000368412.3,ENST00000526491.1,ENST00000447332.3,ENST00000355956.2,ENST00000461564.2,ENST00000531455.1,ENST00000534019.1,ENST00000527418.1,ENST00000487956.2,ENST00000356955.2,ENST00000360674.4,ENST00000359280.4,ENST00000529473.1,ENST00000472434.1,ENST00000449910.2	chr1	155028407:155028476:155028555:155028725:155028861:155028883,	155028556	155028725	155028577	155028577	Nonsense_Mutation	C	T	p.R266X
PRAD	TCGA-EJ-7115-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138451634	138451634	Nonsense_Mutation	C	A	p.E537X
PRAD	TCGA-CH-5738-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472907	70472907	Nonsense_Mutation	C	A	p.E67X
PRAD	TCGA-HC-A4ZV-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101608866:101609070:101612576:101612669:101620721:101620791,	101612577	101612669	101612611	101612611	Nonsense_Mutation	A	T	p.L247X
PRAD	TCGA-EJ-5519-01	SEPT4	ENST00000317268.3,ENST00000579371.1,ENST00000393086.1,ENST00000457347.2,ENST00000426861.1,ENST00000577440.1,ENST00000317256.6,ENST00000584488.1,ENST00000580844.1,ENST00000583114.1,ENST00000583273.1,ENST00000580796.1,ENST00000412945.3	chr17	56598358:56598521:56598614:56598711:56598905:56599007,	56598615	56598711	56598642	56598642	Nonsense_Mutation	G	A	p.R378X
PRAD	TCGA-EJ-5519-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000522756.1,ENST00000423620.2	chr8	95674728:95674783:95676924:95677035:95677154:95677287,	95676925	95677035	95676990	95676990	Nonsense_Mutation	C	G	p.S237X
PRAD	TCGA-KK-A5A1-01	COL5A3	ENST00000264828.3	chr19	10080024:10080078:10080250:10080358:10080544:10080598,	10080251	10080358	10080271	10080271	Nonsense_Mutation	G	A	p.R1360X
PRAD	TCGA-KK-A6E8-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467116	58467116	Nonsense_Mutation	G	A	p.Q765X
PRAD	TCGA-EJ-A46G-01	B4GALT6	ENST00000237019.7,ENST00000306851.5	chr18	29210921:29211109:29218606:29218723:29225317:29225442,	29218607	29218723	29218612	29218612	Nonsense_Mutation	C	A	p.E195X
PRAD	TCGA-KK-A6E2-01	RRNAD1	ENST00000368216.4	chr1	156703168:156703312:156703800:156704285:156705516:156705592,	156703801	156704285	156704062	156704062	Nonsense_Mutation	C	T	p.Q300X
PRAD	TCGA-KK-A59X-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000443427.1,ENST00000338799.5,ENST00000427531.2	chr6	152201791:152201906:152265307:152265643:152332790:152332929,	152265308	152265643	152265313	152265313	Nonsense_Mutation	C	T	p.R256X
PRAD	TCGA-G9-6363-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251838	81251838	Nonsense_Mutation	G	A	p.Q538X
PRAD	TCGA-G9-6363-01	DNAH2	ENST00000574518.1,ENST00000389173.2,ENST00000572933.1	chr17	7680096:7680207:7680763:7680952:7681394:7681498,	7680764	7680952	7680786	7680786	Nonsense_Mutation	C	G	p.S1694X
PRAD	TCGA-EJ-5505-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451980	155451980	Nonsense_Mutation	A	T	p.C227X
PRAD	TCGA-CH-5761-01	CBLC	ENST00000341505.4	chr19	45281125:45281541:45284161:45284308:45284463:45284620,	45284162	45284308	45284300	45284300	Nonsense_Mutation	C	A	p.C164X
PRAD	TCGA-CH-5761-01	CNTN4	ENST00000422330.1,ENST00000418658.1,ENST00000455083.1,ENST00000397461.1,ENST00000427741.1	chr3	2380861:2380917:2613099:2613242:2777898:2778007,	2613100	2613242	2613235	2613235	Nonsense_Mutation	C	A	p.C16X
PRAD	TCGA-ZG-A9NI-01	LPIN1	ENST00000256720.2,ENST00000396097.1,ENST00000425416.2,ENST00000449576.2,ENST00000396099.1,ENST00000404113.2	chr2	11945195:11945282:11955213:11955366:11959609:11959724,	11955214	11955366	11955224	11955224	Nonsense_Mutation	A	T	p.K718*
PRAD	TCGA-HC-7230-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28*
PRAD	TCGA-XK-AAJ3-01	MYO3B	ENST00000442690.1,ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171055761:171055901:171056659:171056794:171070888:171070993,	171056660	171056794	171056737	171056737	Nonsense_Mutation	T	A	p.Y97*
PRAD	TCGA-HC-8259-01	SCUBE2	ENST00000457346.2,ENST00000520467.1	chr11	9069619:9069645:9072152:9072257:9074645:9074762,9069619:9069645:9072152:9072257:9074292:9074379,	9072153	9072257	9072168	9072168	Nonsense_Mutation	G	A	p.R542*
PRAD	TCGA-CH-5754-01	PLCH2	ENST00000449969.1,ENST00000378486.3,ENST00000343889.4,ENST00000378488.3,ENST00000278878.6,ENST00000419816.2	chr1	2418611:2418815:2419036:2419157:2420645:2420817,	2419037	2419157	2419086	2419086	Nonsense_Mutation	C	A	p.Y361*
PRAD	TCGA-HC-A8D0-01	TMPRSS2	ENST00000398585.3,ENST00000454499.1,ENST00000458356.1,ENST00000424093.1,ENST00000332149.5	chr21	42861433:42861520:42866282:42866505:42870045:42870116,	42866283	42866505	42866285	42866285	Nonsense_Mutation	G	C	p.S116*
PRAD	TCGA-G9-6494-01	HFM1	ENST00000430465.1	chr1	91781696:91781741:91781947:91782033:91784634:91784766,91781696:91781741:91781947:91782033:91784849:91784947,	91781948	91782033	91781959	91781959	Nonsense_Mutation	C	A	p.E963*
PRAD	TCGA-EJ-A7NH-01	EIF3L	ENST00000406934.1	chr22	38251571:38251651:38254685:38254747:38258975:38258998,38247289:38247497:38254685:38254747:38258975:38259040,	38254686	38254747	38254723	38254723	Nonsense_Mutation	C	G	p.Y137*
PRAD	TCGA-VP-A879-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626245	82626245	Nonsense_Mutation	G	A	p.R130*
PRAD	TCGA-HC-7749-01	ATXN3	ENST00000556374.1,ENST00000554214.1,ENST00000556958.1,ENST00000553686.1,ENST00000557311.1,ENST00000393287.5,ENST00000556671.1,ENST00000553491.1,ENST00000553570.1,ENST00000555958.1,ENST00000340660.6,ENST00000556315.1,ENST00000553287.1,ENST00000555381.1,ENST00000359366.5,ENST00000545170.1,ENST00000515746.1,ENST00000556288.1,ENST00000553498.1,ENST00000556898.1,ENST00000556220.1,ENST00000554592.1,ENST00000556274.1,ENST00000502250.1,ENST00000553488.1,ENST00000429774.2,ENST00000554672.1,ENST00000532032.1,ENST00000554673.1,ENST00000554491.1,ENST00000506466.1,ENST00000554994.1,ENST00000554350.1,ENST00000503767.1,ENST00000553309.1	chr14	92547366:92547405:92548643:92548810:92549469:92549579,	92548644	92548810	92548749	92548749	Nonsense_Mutation	C	A	p.E224*
PRAD	TCGA-EJ-7782-01	IL4R	ENST00000380922.3,ENST00000568746.1,ENST00000395762.2,ENST00000543915.2,ENST00000563886.1,ENST00000170630.2,ENST00000565915.1	chr16	27370236:27370315:27372086:27372136:27373572:27373617,	27372087	27372136	27372111	27372111	Nonsense_Mutation	C	T	p.R292*
PRAD	TCGA-EJ-7782-01	CIRBP	ENST00000413636.2,ENST00000588230.1,ENST00000591659.1,ENST00000589235.1,ENST00000587323.1,ENST00000586472.1,ENST00000585913.1,ENST00000589710.1,ENST00000589266.1,ENST00000588090.1,ENST00000586773.1,ENST00000591935.1,ENST00000585630.1,ENST00000588030.1,ENST00000588411.1,ENST00000589660.1,ENST00000586548.1,ENST00000589686.1,ENST00000320936.5,ENST00000586636.1,ENST00000585914.1,ENST00000587896.1	chr19	1270926:1271035:1271138:1271245:1271327:1271360,	1271139	1271245	1271165	1271165	Nonsense_Mutation	C	T	p.Q44*
PRAD	TCGA-EJ-7782-01	CIRBP	ENST00000590171.1,ENST00000591097.1	chr19	1270926:1271035:1271119:1271245:1271327:1271360,	1271120	1271245	1271165	1271165	Nonsense_Mutation	C	T	p.Q44*
PRAD	TCGA-EJ-7782-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014243	28014243	Nonsense_Mutation	G	A	p.R115*
PRAD	TCGA-EJ-7782-01	BAZ1A	ENST00000382422.2,ENST00000360310.1	chr14	35254982:35255207:35255331:35255427:35261980:35262041,	35255332	35255427	35255348	35255348	Nonsense_Mutation	C	T	p.W530*
PRAD	TCGA-VP-A87B-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000565605.1,ENST00000569240.1	chr16	58622724:58622810:58633139:58633415:58663631:58663719,	58633140	58633415	58633154	58633154	Nonsense_Mutation	G	A	p.Q30*
PRAD	TCGA-J9-A52C-01	VPS52	ENST00000464425.1	chr6	33236275:33236426:33236790:33236995:33237266:33237334,	33236791	33236995	33236870	33236870	Nonsense_Mutation	G	A	p.R157*
PRAD	TCGA-J9-A52C-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000463486.1,ENST00000478934.1,ENST00000445902.2	chr6	33236275:33236426:33236790:33236966:33237266:33237334,	33236791	33236966	33236870	33236870	Nonsense_Mutation	G	A	p.R157*
PRAD	TCGA-J9-A52C-01	AP1G2	ENST00000465445.2,ENST00000397120.3,ENST00000308724.5,ENST00000555510.1,ENST00000535852.2,ENST00000460049.2	chr14	24030720:24030844:24031170:24031275:24031496:24031615,	24031171	24031275	24031220	24031220	Nonsense_Mutation	G	A	p.Q562*
PRAD	TCGA-J9-A52C-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PRAD	TCGA-J9-A52C-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
PRAD	TCGA-J9-A52C-01	PMFBP1	ENST00000237353.10,ENST00000355636.6,ENST00000537465.1,ENST00000379073.5	chr16	72156812:72156887:72157444:72157548:72158665:72158752,	72157445	72157548	72157464	72157464	Nonsense_Mutation	G	A	p.Q897*
PRAD	TCGA-J9-A52C-01	VEGFA	ENST00000519767.1	chr6	43746625:43746655:43748468:43748540:43749692:43749789,43746625:43746655:43748468:43748540:43752277:43752295,	43748469	43748540	43748503	43748503	Nonsense_Mutation	C	T	p.R333*
PRAD	TCGA-J9-A52C-01	VEGFA	ENST00000523873.1,ENST00000372055.4	chr6	43746625:43746655:43748468:43748591:43749692:43749789,	43748469	43748591	43748503	43748503	Nonsense_Mutation	C	T	p.R333*
PRAD	TCGA-J9-A52C-01	VEGFA	ENST00000518689.1,ENST00000413642.3	chr6	43746625:43746655:43748468:43748522:43749692:43749789,	43748469	43748522	43748503	43748503	Nonsense_Mutation	C	T	p.R333*
PRAD	TCGA-J9-A52C-01	RHBDL3	ENST00000431505.2	chr17	30621363:30621461:30625110:30625223:30632359:30632460,30621363:30621461:30625110:30625223:30643250:30643293,	30625111	30625223	30625115	30625115	Nonsense_Mutation	G	T	p.E225*
PRAD	TCGA-J9-A52C-01	MFGE8	ENST00000558029.1,ENST00000566497.1,ENST00000268151.7,ENST00000268150.8	chr15	89450425:89450607:89453022:89453154:89456477:89456490,	89453023	89453154	89453092	89453092	Nonsense_Mutation	G	A	p.R38*
PRAD	TCGA-G9-6356-01	GART	ENST00000424203.1,ENST00000430874.1,ENST00000381815.4,ENST00000426819.1,ENST00000381839.3,ENST00000361093.5,ENST00000381831.3,ENST00000497313.1,ENST00000366093.2	chr21	34903092:34903190:34903794:34903863:34904650:34904762,	34903795	34903863	34903824	34903824	Nonsense_Mutation	C	A	p.E190*
PRAD	TCGA-EJ-5505-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451980	155451980	Nonsense_Mutation	A	T	p.C227*
PRAD	TCGA-XK-AAIW-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000236698.5	chr3	136076561:136076690:136077989:136078138:136082207:136082309,	136077990	136078138	136078015	136078015	Nonsense_Mutation	G	A	p.R971*
PRAD	TCGA-XK-AAIW-01	PTPRE	ENST00000479896.1,ENST00000419012.2,ENST00000306042.5,ENST00000254667.3	chr10	129875880:129876047:129877823:129877959:129881095:129881204,	129877824	129877959	129877927	129877927	Nonsense_Mutation	C	T	p.R666*
PRAD	TCGA-XK-AAIW-01	FCHSD1	ENST00000522126.1,ENST00000435817.2,ENST00000522783.1,ENST00000519800.1	chr5	141029453:141029521:141029925:141029971:141030586:141030684,	141029926	141029971	141029928	141029928	Nonsense_Mutation	G	A	p.Q55*
PRAD	TCGA-XK-AAIW-01	TONSL	ENST00000409379.3	chr8	145657667:145657843:145658970:145659142:145659360:145659662,	145658971	145659142	145659037	145659037	Nonsense_Mutation	G	A	p.Q1165*
PRAD	TCGA-XK-AAIW-01	BAG6	ENST00000375976.4,ENST00000404765.2,ENST00000375964.6,ENST00000211379.5,ENST00000441793.1,ENST00000362049.6	chr6	31607975:31608083:31608161:31608305:31608421:31608469,	31608162	31608305	31608180	31608180	Nonsense_Mutation	C	T	p.W1040*
PRAD	TCGA-XK-AAIW-01	SLC25A35	ENST00000577745.1,ENST00000579681.1,ENST00000580340.1,ENST00000380067.2,ENST00000585311.1,ENST00000396278.1	chr17	8194650:8194803:8195840:8195906:8197750:8198125,	8195841	8195906	8195891	8195891	Nonsense_Mutation	G	A	p.Q131*
PRAD	TCGA-XK-AAIW-01	HCN3	ENST00000496230.1	chr1	155252328:155252631:155253764:155254548:155254955:155255102,	155253765	155254548	155254437	155254437	Nonsense_Mutation	G	A	p.W326*
PRAD	TCGA-XK-AAIW-01	HCN3	ENST00000368358.3	chr1	155252328:155252631:155254329:155254548:155254955:155255102,155253764:155253926:155254329:155254548:155254955:155255102,	155254330	155254548	155254437	155254437	Nonsense_Mutation	G	A	p.W326*
PRAD	TCGA-XK-AAIW-01	SRI	ENST00000490437.1	chr7	87840196:87840240:87846436:87846506:87856223:87856268,	87846437	87846506	87846500	87846500	Nonsense_Mutation	G	A	p.Q48*
PRAD	TCGA-XK-AAIW-01	F13B	ENST00000367412.1	chr1	197008320:197008541:197009651:197009865:197019826:197019975,	197009652	197009865	197009752	197009752	Nonsense_Mutation	C	A	p.G618*
PRAD	TCGA-XK-AAIW-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000350198.4,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102504239:102504399:102505257:102505397:102507627:102507783,	102505258	102505397	102505311	102505311	Nonsense_Mutation	C	T	p.R1099*
PRAD	TCGA-XK-AAIW-01	DEAF1	ENST00000382409.3	chr11	684897:684963:686857:686997:687910:687936,	686858	686997	686974	686974	Nonsense_Mutation	G	A	p.Q230*
PRAD	TCGA-XK-AAIW-01	ZNF143	ENST00000532577.1,ENST00000526657.1,ENST00000438144.2	chr11	9482603:9482623:9492852:9492967:9494223:9494263,	9492853	9492967	9492877	9492877	Nonsense_Mutation	C	T	p.R8*
PRAD	TCGA-XK-AAIW-01	ZNF143	ENST00000299606.2,ENST00000530463.1,ENST00000396602.2,ENST00000496276.1	chr11	9482603:9482623:9492848:9492967:9494223:9494263,	9492849	9492967	9492877	9492877	Nonsense_Mutation	C	T	p.R8*
PRAD	TCGA-XK-AAIW-01	TXNDC15	ENST00000507024.1	chr5	134210086:134210173:134223384:134223872:134229181:134229345,	134223385	134223872	134223831	134223831	Nonsense_Mutation	G	T	p.G184*
PRAD	TCGA-XK-AAIW-01	PTPN22	ENST00000534519.1,ENST00000420377.2,ENST00000359785.5,ENST00000460620.1,ENST00000484147.1,ENST00000528414.1	chr1	114400359:114400398:114401099:114401195:114401623:114401700,	114401100	114401195	114401162	114401162	Nonsense_Mutation	G	A	p.Q103*
PRAD	TCGA-XK-AAIW-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122801295:122801402:122803778:122803895:122812493:122812709,	122803779	122803895	122803805	122803805	Nonsense_Mutation	G	A	p.Q1103*
PRAD	TCGA-XK-AAIW-01	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000498422.1,ENST00000469153.1	chr3	63821976:63822034:63823651:63823738:63824047:63824175,	63823652	63823738	63823673	63823673	Nonsense_Mutation	G	A	p.R111*
PRAD	TCGA-XK-AAIW-01	WDHD1	ENST00000420358.2,ENST00000360586.3,ENST00000421192.1	chr14	55468810:55468903:55473997:55474093:55475033:55475084,	55473998	55474093	55474015	55474015	Nonsense_Mutation	G	A	p.Q195*
PRAD	TCGA-XK-AAIW-01	ABCA3	ENST00000382381.3,ENST00000301732.5,ENST00000566200.1	chr16	2328295:2328459:2328943:2329131:2331027:2331222,	2328944	2329131	2329104	2329104	Nonsense_Mutation	G	A	p.Q1463*
PRAD	TCGA-XK-AAIW-01	LIPC	ENST00000414170.3,ENST00000356113.6,ENST00000299022.5	chr15	58724189:58724319:58830531:58830716:58833983:58834166,	58830532	58830716	58830636	58830636	Nonsense_Mutation	C	T	p.R65*
PRAD	TCGA-XK-AAIW-01	CHIC2	ENST00000263921.3	chr4	54880229:54880286:54915121:54915277:54915417:54915472,	54915122	54915277	54915146	54915146	Nonsense_Mutation	C	T	p.W102*
PRAD	TCGA-XK-AAIW-01	AP1M1	ENST00000291439.3,ENST00000444449.2,ENST00000590756.1,ENST00000541844.1,ENST00000429941.2	chr19	16344303:16344429:16345009:16345085:16345223:16345575,	16345010	16345085	16345076	16345076	Nonsense_Mutation	C	T	p.Q414*
PRAD	TCGA-XK-AAIW-01	KIF2C	ENST00000372222.3,ENST00000372224.4,ENST00000372217.1,ENST00000372218.4	chr1	45228216:45228330:45232497:45232621:45232768:45232880,	45232498	45232621	45232618	45232618	Nonsense_Mutation	C	T	p.R644*
PRAD	TCGA-XK-AAIW-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170626692	170626692	Nonsense_Mutation	C	T	p.R72*
PRAD	TCGA-XK-AAIW-01	ZNF106	ENST00000565611.1	chr15	42738823:42738856:42740269:42740903:42758250:42758312,42738823:42738856:42740269:42740903:42749414:42749711,	42740270	42740903	42740533	42740533	Nonsense_Mutation	G	A	p.R935*
PRAD	TCGA-XK-AAIW-01	NDRG1	ENST00000518480.1	chr8	134276789:134276895:134292474:134292510:134296491:134296568,134276789:134276895:134292474:134292510:134309376:134309480,	134292475	134292510	134292492	134292492	Nonsense_Mutation	G	A	p.Q28*
PRAD	TCGA-XK-AAIW-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63175805	63175805	Nonsense_Mutation	C	A	p.Y643*
PRAD	TCGA-XK-AAIW-01	TTLL7	ENST00000485638.1,ENST00000477524.1,ENST00000480174.1,ENST00000260505.8	chr1	84403534:84403699:84408145:84408362:84412806:84412965,	84408146	84408362	84408190	84408190	Nonsense_Mutation	G	A	p.R227*
PRAD	TCGA-XK-AAIW-01	SYDE1	ENST00000342784.2,ENST00000600440.1,ENST00000600252.1	chr19	15222123:15222250:15222442:15222603:15223156:15223382,	15222443	15222603	15222568	15222568	Nonsense_Mutation	C	T	p.R172*
PRAD	TCGA-XK-AAIW-01	SURF6	ENST00000372022.4	chr9	136199383:136199596:136200553:136200642:136201227:136201437,	136200554	136200642	136200595	136200595	Nonsense_Mutation	G	A	p.R118*
PRAD	TCGA-XK-AAIW-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43692241:43692419:43693913:43694048:43695880:43695997,	43693914	43694048	43693986	43693986	Nonsense_Mutation	C	T	p.R557*
PRAD	TCGA-XK-AAIW-01	WT1	ENST00000452863.3,ENST00000448076.3,ENST00000379079.2	chr11	32410587:32410725:32413526:32413610:32414211:32414301,	32413527	32413610	32413578	32413578	Nonsense_Mutation	G	A	p.R458*
PRAD	TCGA-XK-AAIW-01	WT1	ENST00000530998.1,ENST00000332351.3,ENST00000379077.3	chr11	32410587:32410725:32413517:32413610:32414211:32414301,	32413518	32413610	32413578	32413578	Nonsense_Mutation	G	A	p.R458*
PRAD	TCGA-XK-AAIW-01	TMEM45B	ENST00000527754.1,ENST00000524567.1,ENST00000281441.3	chr11	129722369:129722555:129724504:129724711:129725602:129725787,	129724505	129724711	129724588	129724588	Nonsense_Mutation	C	T	p.Q88*
PRAD	TCGA-XK-AAIW-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548402	165548402	Nonsense_Mutation	C	T	p.W140*
PRAD	TCGA-XK-AAIW-01	MAL2	ENST00000522112.2	chr8	120221388:120221440:120233826:120233997:120252404:120252560,120220792:120220844:120233826:120233997:120252404:120252560,120181921:120182023:120233826:120233997:120252404:120252560,	120233827	120233997	120233895	120233895	Nonsense_Mutation	G	A	p.W67*
PRAD	TCGA-XK-AAIW-01	USP34	ENST00000453734.1,ENST00000411912.1,ENST00000398571.2	chr2	61463160:61463208:61463295:61463371:61463459:61463524,	61463296	61463371	61463362	61463362	Nonsense_Mutation	C	T	p.W2284*
PRAD	TCGA-XK-AAIW-01	PHF10	ENST00000366780.4,ENST00000339209.4	chr6	170104000:170104184:170105228:170105417:170105711:170105820,	170105229	170105417	170105319	170105319	Nonsense_Mutation	G	A	p.Q441*
PRAD	TCGA-XK-AAIW-01	SBNO1	ENST00000420886.2,ENST00000602398.1	chr12	123825534:123825635:123829804:123830117:123832575:123832680,	123829805	123830117	123830009	123830009	Nonsense_Mutation	G	A	p.Q116*
PRAD	TCGA-XK-AAIW-01	SBNO1	ENST00000267176.4,ENST00000602750.1	chr12	123825534:123825635:123829804:123830114:123832575:123832680,	123829805	123830114	123830009	123830009	Nonsense_Mutation	G	A	p.Q116*
PRAD	TCGA-XK-AAIW-01	FBXO27	ENST00000509137.2,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39517509:39517645:39521668:39521764:39521848:39521957,	39521669	39521764	39521716	39521716	Nonsense_Mutation	C	T	p.W175*
PRAD	TCGA-XK-AAIW-01	RBM4B	ENST00000310046.4	chr11	66433018:66433049:66436085:66436762:66444138:66444562,	66436086	66436762	66436508	66436508	Nonsense_Mutation	G	A	p.R223*
PRAD	TCGA-XK-AAIW-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39234171:39234334:39237724:39237844:39239266:39239489,	39237725	39237844	39237759	39237759	Nonsense_Mutation	G	A	p.R826*
PRAD	TCGA-XK-AAIW-01	RBPMS	ENST00000397323.4,ENST00000519359.1	chr8	30402010:30402141:30416403:30416473:30423773:30423877,	30416404	30416473	30416412	30416412	Nonsense_Mutation	G	A	p.W179*
PRAD	TCGA-XK-AAIW-01	SLC19A3	ENST00000258403.3,ENST00000425817.1	chr2	228560604:228560797:228563451:228564280:228566884:228567036,	228563452	228564280	228563579	228563579	Nonsense_Mutation	C	T	p.W284*
PRAD	TCGA-XK-AAIW-01	ANKRD23	ENST00000462692.1,ENST00000318357.4,ENST00000418232.1	chr2	97506152:97506251:97506523:97506649:97507796:97507922,	97506524	97506649	97506646	97506646	Nonsense_Mutation	G	A	p.Q102*
PRAD	TCGA-XK-AAIW-01	TBC1D2	ENST00000375064.1,ENST00000375066.5	chr9	100995697:100995831:101006275:101006411:101017454:101017862,100995697:100995831:101006275:101006411:101014066:101014208,	101006276	101006411	101006409	101006409	Nonsense_Mutation	G	A	p.Q172*
PRAD	TCGA-XK-AAIW-01	FOXP4	ENST00000373060.1,ENST00000409208.1,ENST00000307972.4,ENST00000373063.3,ENST00000373057.3	chr6	41533486:41533702:41545723:41545819:41552506:41552556,	41545724	41545819	41545742	41545742	Nonsense_Mutation	C	T	p.Q75*
PRAD	TCGA-XK-AAIW-01	SFI1	ENST00000495107.1,ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000432498.1,ENST00000417682.2,ENST00000382162.3,ENST00000540643.1	chr22	32009127:32009202:32009339:32009516:32009587:32009701,	32009340	32009516	32009508	32009508	Nonsense_Mutation	C	T	p.Q881*
PRAD	TCGA-XK-AAIW-01	C12orf40	ENST00000324616.5,ENST00000468200.2	chr12	40078668:40078729:40085850:40085914:40110557:40110640,	40085851	40085914	40085893	40085893	Nonsense_Mutation	C	T	p.R464*
PRAD	TCGA-XK-AAIW-01	NGLY1	ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9,ENST00000496726.1	chr3	25760901:25761126:25761504:25761682:25770623:25770807,	25761505	25761682	25761538	25761538	Nonsense_Mutation	G	A	p.R568*
PRAD	TCGA-XK-AAIW-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000533415.1,ENST00000525495.2,ENST00000446365.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1,ENST00000573550.1	chr17	45234595:45234750:45235571:45235669:45247282:45247343,	45235572	45235669	45235647	45235647	Nonsense_Mutation	C	A	p.G134*
PRAD	TCGA-XK-AAIW-01	PRR5L	ENST00000311599.5,ENST00000389693.3	chr11	36467849:36467990:36472758:36472885:36483891:36483989,36458934:36459026:36472758:36472885:36483891:36483989,	36472759	36472885	36472798	36472798	Nonsense_Mutation	C	T	p.Q209*
PRAD	TCGA-XK-AAIW-01	GAK	ENST00000511163.1,ENST00000314167.4,ENST00000509566.1,ENST00000510799.1	chr4	845640:845762:853393:853510:858909:859032,	853394	853510	853455	853455	Nonsense_Mutation	C	T	p.W1074*
PRAD	TCGA-XK-AAIW-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000373822.1,ENST00000423325.2,ENST00000346162.6	chr6	35838710:35838736:35840339:35840505:35842009:35842116,	35840340	35840505	35840373	35840373	Nonsense_Mutation	G	A	p.R240*
PRAD	TCGA-XK-AAIW-01	SDK1	ENST00000404826.2,ENST00000476701.1,ENST00000389531.3	chr7	4188893:4189095:4198079:4198183:4201417:4201488,	4198080	4198183	4198177	4198177	Nonsense_Mutation	C	T	p.Q1575*
PRAD	TCGA-XK-AAIW-01	SPAG17	ENST00000336338.5	chr1	118634552:118634625:118635778:118635940:118640292:118640474,	118635779	118635940	118635826	118635826	Nonsense_Mutation	G	A	p.Q376*
PRAD	TCGA-XK-AAIW-01	TRNT1	ENST00000280591.6,ENST00000434583.1,ENST00000482311.1,ENST00000251607.6	chr3	3170838:3170872:3178943:3179137:3182193:3182332,	3178944	3179137	3178985	3178985	Nonsense_Mutation	G	T	p.G64*
PRAD	TCGA-XK-AAIW-01	ANXA4	ENST00000394295.4,ENST00000536030.1,ENST00000477632.1,ENST00000409920.1,ENST00000471395.1	chr2	70046411:70046470:70047830:70047953:70052587:70052906,	70047831	70047953	70047882	70047882	Nonsense_Mutation	G	T	p.E279*
PRAD	TCGA-XK-AAIW-01	SLAIN2	ENST00000264313.6	chr4	48385694:48385801:48422141:48422460:48424027:48427032,	48422142	48422460	48422198	48422198	Nonsense_Mutation	C	T	p.Q473*
PRAD	TCGA-XK-AAIW-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351102	134351102	Nonsense_Mutation	C	T	p.R1196*
PRAD	TCGA-XK-AAIW-01	CHD6	ENST00000373233.3	chr20	40085903:40086068:40101961:40102157:40111948:40112153,	40101962	40102157	40102132	40102132	Nonsense_Mutation	G	A	p.R832*
PRAD	TCGA-XK-AAIW-01	SCD	ENST00000370355.2	chr10	102114183:102114389:102116288:102116521:102120490:102120541,	102116289	102116521	102116398	102116398	Nonsense_Mutation	C	T	p.R253*
PRAD	TCGA-XK-AAIW-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41807440:41807609:41808569:41808854:41809876:41809961,	41808570	41808854	41808629	41808629	Nonsense_Mutation	C	T	p.Q583*
PRAD	TCGA-XK-AAIW-01	TRAP1	ENST00000571538.1,ENST00000571804.1,ENST00000538171.1,ENST00000246957.5	chr16	3729735:3729791:3735996:3736137:3739055:3739076,	3735997	3736137	3736032	3736032	Nonsense_Mutation	G	A	p.Q146*
PRAD	TCGA-XK-AAIW-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5207932:5208068:5208247:5208402:5210479:5210605,	5208248	5208402	5208351	5208351	Nonsense_Mutation	G	A	p.Q1848*
PRAD	TCGA-XK-AAIW-01	RSRC1	ENST00000480820.1,ENST00000471994.1,ENST00000475278.2,ENST00000476899.1,ENST00000295930.3,ENST00000482822.2,ENST00000477788.1	chr3	157920926:157921034:158015827:158015864:158072645:158072697,	158015828	158015864	158015856	158015856	Nonsense_Mutation	G	T	p.E117*
PRAD	TCGA-XK-AAIW-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047721	96047721	Nonsense_Mutation	C	T	p.R21*
PRAD	TCGA-XK-AAIW-01	NEK1	ENST00000510533.1,ENST00000512193.1	chr4	170429398:170429482:170458959:170459062:170477082:170477246,	170458960	170459062	170459007	170459007	Nonsense_Mutation	G	A	p.R540*
PRAD	TCGA-XK-AAIW-01	KIAA0355	ENST00000299505.6	chr19	34818675:34818771:34818894:34819056:34821093:34821252,	34818895	34819056	34818985	34818985	Nonsense_Mutation	C	T	p.Q345*
PRAD	TCGA-XK-AAIW-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000530582.1,ENST00000533792.1	chr11	7672070:7672196:7672886:7673075:7674254:7674431,	7672887	7673075	7673019	7673019	Nonsense_Mutation	C	T	p.R794*
PRAD	TCGA-XK-AAIW-01	TCF3	ENST00000585855.1,ENST00000592395.1	chr19	1611804:1611848:1612205:1612432:1615684:1615740,1611804:1611848:1612205:1612432:1615283:1615323,	1612206	1612432	1612209	1612209	Nonsense_Mutation	G	A	p.R604*
PRAD	TCGA-XK-AAIW-01	TCF3	ENST00000453954.2,ENST00000590684.1	chr19	1611804:1611848:1612205:1612429:1615684:1615740,	1612206	1612429	1612209	1612209	Nonsense_Mutation	G	A	p.R604*
PRAD	TCGA-XK-AAIW-01	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000541695.1,ENST00000542762.1,ENST00000540270.1,ENST00000318197.6	chr12	18854625:18854710:18858099:18858249:18865775:18865844,	18858100	18858249	18858171	18858171	Nonsense_Mutation	G	A	p.Q265*
PRAD	TCGA-XK-AAIW-01	DCAF11	ENST00000558624.1,ENST00000326009.5,ENST00000559144.1,ENST00000557802.1,ENST00000446197.3,ENST00000396936.1,ENST00000558914.1,ENST00000396941.4,ENST00000559115.1	chr14	24588767:24588825:24588919:24589105:24590046:24590200,	24588920	24589105	24588974	24588974	Nonsense_Mutation	C	T	p.Q321*
PRAD	TCGA-XK-AAIW-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48567831:48567941:48619819:48619970:48626749:48626884,	48619820	48619970	48619871	48619871	Nonsense_Mutation	C	A	p.Y4802*
PRAD	TCGA-XK-AAIW-01	TLN1	ENST00000314888.9,ENST00000540444.1	chr9	35715055:35715184:35716386:35716553:35717142:35717437,	35716387	35716553	35716542	35716542	Nonsense_Mutation	G	A	p.R824*
PRAD	TCGA-XK-AAIW-01	ANKRD27	ENST00000588700.1	chr19	33134477:33134537:33135230:33135385:33140587:33140698,	33135231	33135385	33135305	33135305	Nonsense_Mutation	G	A	p.R151*
PRAD	TCGA-XK-AAIW-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62394760:62394825:62396240:62396484:62396665:62396764,	62396241	62396484	62396361	62396361	Nonsense_Mutation	C	T	p.W709*
PRAD	TCGA-XK-AAIW-01	SLC35F3	ENST00000366618.3	chr1	234041274:234041504:234367162:234367487:234444846:234445066,	234367163	234367487	234367480	234367480	Nonsense_Mutation	C	T	p.R201*
PRAD	TCGA-XK-AAIW-01	RAB25	ENST00000473336.1,ENST00000487325.1	chr1	156035701:156035897:156038060:156038254:156039461:156039542,156031173:156031234:156038060:156038254:156039461:156039542,	156038061	156038254	156038134	156038134	Nonsense_Mutation	C	T	p.R105*
PRAD	TCGA-XK-AAIW-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128422	202128422	Nonsense_Mutation	G	A	p.R142*
PRAD	TCGA-XK-AAIW-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128422	202128422	Nonsense_Mutation	G	A	p.R142*
PRAD	TCGA-XK-AAIW-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128422	202128422	Nonsense_Mutation	G	A	p.R142*
PRAD	TCGA-XK-AAIW-01	PTPN7	ENST00000476061.1	chr1	202127245:202127429:202128408:202128469:202129672:202129722,	202128409	202128469	202128422	202128422	Nonsense_Mutation	G	A	p.R142*
PRAD	TCGA-XK-AAIW-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944227	235944227	Nonsense_Mutation	G	A	p.R1718*
PRAD	TCGA-XK-AAIW-01	UHRF1BP1L	ENST00000279907.7,ENST00000545232.2	chr12	100422232:100422388:100433373:100433567:100441307:100441416,100430920:100431533:100433373:100433567:100441307:100441416,	100433374	100433567	100433475	100433475	Nonsense_Mutation	G	A	p.Q1392*
PRAD	TCGA-XK-AAIW-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380427.1	chr9	19356969:19357152:19357962:19358158:19360241:19360487,	19357963	19358158	19358036	19358036	Nonsense_Mutation	C	T	p.R868*
PRAD	TCGA-XK-AAIW-01	ATP13A1	ENST00000357324.6,ENST00000291503.5,ENST00000497556.1	chr19	19760549:19760749:19762497:19762606:19763403:19763529,	19762498	19762606	19762591	19762591	Nonsense_Mutation	C	A	p.G748*
PRAD	TCGA-XK-AAIW-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76729777:76729859:76732264:76732397:76735156:76735212,	76732265	76732397	76732345	76732345	Nonsense_Mutation	C	T	p.R337*
PRAD	TCGA-XK-AAIW-01	CD28	ENST00000374481.3	chr2	204591355:204591421:204591673:204591712:204594370:204594495,	204591674	204591712	204591691	204591691	Nonsense_Mutation	G	T	p.G46*
PRAD	TCGA-XK-AAIW-01	CD28	ENST00000324106.8	chr2	204571246:204571340:204591355:204591712:204594370:204594495,204571415:204571471:204591355:204591712:204594370:204594495,	204591356	204591712	204591691	204591691	Nonsense_Mutation	G	T	p.G46*
PRAD	TCGA-XK-AAIW-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85731039:85731497:85738544:85738738:85741237:85741339,	85738545	85738738	85738568	85738568	Nonsense_Mutation	G	A	p.Q622*
PRAD	TCGA-XK-AAIW-01	PFKP	ENST00000381125.4	chr10	3109863:3109899:3124579:3124653:3141466:3141544,	3124580	3124653	3124650	3124650	Nonsense_Mutation	C	T	p.R27*
PRAD	TCGA-XK-AAIW-01	CLK3	ENST00000568605.1	chr15	74912349:74912566:74914460:74914901:74917242:74917310,	74914461	74914901	74914554	74914554	Nonsense_Mutation	C	T	p.R303*
PRAD	TCGA-XK-AAIW-01	CLK3	ENST00000568139.1,ENST00000566126.1,ENST00000395066.3,ENST00000564096.1,ENST00000345005.4	chr15	74912349:74912566:74914460:74914557:74914834:74914850,	74914461	74914557	74914554	74914554	Nonsense_Mutation	C	T	p.R303*
PRAD	TCGA-XK-AAIW-01	ARHGEF40	ENST00000298693.3,ENST00000555038.1,ENST00000298694.4,ENST00000553709.1	chr14	21541203:21541401:21542090:21543339:21543490:21543658,	21542091	21543339	21543039	21543039	Nonsense_Mutation	C	T	p.R384*
PRAD	TCGA-XK-AAIW-01	ARHGEF40	ENST00000556399.1	chr14	21541203:21541401:21542090:21543150:21543490:21543658,	21542091	21543150	21543039	21543039	Nonsense_Mutation	C	T	p.R384*
PRAD	TCGA-XK-AAIW-01	PKN2	ENST00000316005.7,ENST00000370513.5,ENST00000370505.3,ENST00000370521.3	chr1	89225904:89226059:89236034:89236152:89237103:89237249,	89236035	89236152	89236101	89236101	Nonsense_Mutation	C	T	p.R191*
PRAD	TCGA-XK-AAIW-01	OSBPL10	ENST00000479173.1	chr3	31917926:31918004:31921146:31921322:31960878:31960992,31917926:31918004:31921146:31921322:32022390:32022438,31917926:31918004:31921146:31921322:32087982:32088095,	31921147	31921322	31921246	31921246	Nonsense_Mutation	C	A	p.G120*
PRAD	TCGA-XK-AAIW-01	EPHB1	ENST00000398015.3	chr3	134644657:134644722:134670212:134670894:134825289:134825445,	134670213	134670894	134670843	134670843	Nonsense_Mutation	C	T	p.R252*
PRAD	TCGA-XK-AAIW-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21139650:21139732:21143884:21144031:21151592:21151691,	21143885	21144031	21143947	21143947	Nonsense_Mutation	G	A	p.R1435*
PRAD	TCGA-XK-AAIW-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000305960.9,ENST00000543237.1	chr14	67576856:67576976:67578577:67578636:67579734:67579888,	67578578	67578636	67578599	67578599	Nonsense_Mutation	C	T	p.R479*
PRAD	TCGA-XK-AAIW-01	SENP1	ENST00000551330.1,ENST00000552189.1,ENST00000339976.6,ENST00000549518.1,ENST00000004980.5,ENST00000549595.1,ENST00000448372.1	chr12	48468472:48468576:48477373:48477545:48482583:48482743,	48477374	48477545	48477397	48477397	Nonsense_Mutation	G	A	p.R177*
PRAD	TCGA-XK-AAIW-01	GSK3A	ENST00000398249.4,ENST00000453535.1,ENST00000222330.3	chr19	42736208:42736301:42736647:42736834:42737261:42737357,	42736648	42736834	42736822	42736822	Nonsense_Mutation	G	A	p.R289*
PRAD	TCGA-XK-AAIW-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000512198.1,ENST00000506345.1,ENST00000360541.5	chr5	137847213:137847293:137848452:137848643:137849256:137849395,	137848453	137848643	137848593	137848593	Nonsense_Mutation	G	A	p.R165*
PRAD	TCGA-XK-AAIW-01	SDC4	ENST00000537976.1	chr20	43959005:43959204:43961662:43961709:43964421:43964560,43959005:43959204:43961662:43961709:43976964:43977064,	43961663	43961709	43961680	43961680	Nonsense_Mutation	C	A	p.E77*
PRAD	TCGA-XK-AAIW-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438297	58438297	Nonsense_Mutation	G	A	p.R418*
PRAD	TCGA-XK-AAIW-01	ALAS1	ENST00000469224.1,ENST00000484952.1,ENST00000394965.2,ENST00000310271.2	chr3	52238708:52238931:52239854:52240039:52240587:52240767,	52239855	52240039	52239990	52239990	Nonsense_Mutation	C	A	p.C312*
PRAD	TCGA-XK-AAIW-01	ZP2	ENST00000574091.1,ENST00000574002.1,ENST00000219593.4	chr16	21210099:21210183:21210890:21210987:21211063:21211199,	21210891	21210987	21210894	21210894	Nonsense_Mutation	G	A	p.R642*
PRAD	TCGA-XK-AAIW-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217739	26217739	Nonsense_Mutation	G	T	p.G138*
PRAD	TCGA-XK-AAIW-01	BTRC	ENST00000370187.3,ENST00000370183.2	chr10	103113938:103113985:103221737:103221815:103239124:103239214,103190101:103190209:103221737:103221815:103239124:103239214,	103221738	103221815	103221813	103221813	Nonsense_Mutation	C	T	p.Q78*
PRAD	TCGA-XK-AAIW-01	BTRC	ENST00000475200.1	chr10	103190101:103190209:103221720:103221815:103239124:103239214,	103221721	103221815	103221813	103221813	Nonsense_Mutation	C	T	p.Q78*
PRAD	TCGA-YL-A8SL-01	PLA2G4A	ENST00000367466.3,ENST00000442353.2	chr1	186919788:186919860:186925233:186925476:186934540:186934725,	186925234	186925476	186925324	186925324	Nonsense_Mutation	C	G	p.S476*
PRAD	TCGA-VP-A87K-01	ENKD1	ENST00000602409.1	chr16	67697839:67697965:67698898:67699071:67699973:67700032,67697689:67697723:67698898:67699071:67699973:67700032,	67698899	67699071	67699024	67699024	Nonsense_Mutation	C	A	p.E110*
PRAD	TCGA-HI-7168-01	TELO2	ENST00000569744.1,ENST00000262319.6	chr16	1555441:1555602:1556238:1556330:1556952:1556972,	1556239	1556330	1556317	1556317	Nonsense_Mutation	C	T	p.Q705*
PRAD	TCGA-HI-7168-01	ARID1B	ENST00000367148.1,ENST00000275248.4,ENST00000414678.2	chr6	157100566:157100605:157150360:157150555:157222509:157222659,	157150361	157150555	157150550	157150550	Nonsense_Mutation	C	T	p.Q578*
PRAD	TCGA-J4-A67L-01	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146823320	146823320	Nonsense_Mutation	G	C	p.S364*
PRAD	TCGA-G9-6338-01	NCAPG2	ENST00000449727.2,ENST00000409423.1,ENST00000409339.3,ENST00000467785.1,ENST00000356309.3,ENST00000432615.1	chr7	158439151:158439255:158443523:158443664:158444984:158445101,	158443524	158443664	158443616	158443616	Nonsense_Mutation	G	A	p.Q995*
PRAD	TCGA-G9-6338-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748753	43748753	Nonsense_Mutation	T	A	p.K680*
PRAD	TCGA-HC-7750-01	OTUB1	ENST00000422031.2,ENST00000428192.2,ENST00000543004.1,ENST00000543988.1,ENST00000538426.1,ENST00000535715.1	chr11	63764001:63764120:63764328:63764413:63764521:63764716,	63764329	63764413	63764357	63764357	Nonsense_Mutation	G	T	p.E123*
PRAD	TCGA-EJ-7785-01	SPTBN5	ENST00000320955.6	chr15	42162440:42162551:42162643:42162758:42163572:42163718,	42162644	42162758	42162706	42162706	Nonsense_Mutation	G	A	p.R1834*
PRAD	TCGA-KK-A7AW-01	APOE	ENST00000446996.1,ENST00000434152.1,ENST00000252486.4,ENST00000425718.1	chr19	45409873:45409924:45411016:45411209:45411789:45411859,	45411017	45411209	45411082	45411082	Nonsense_Mutation	G	T	p.E37*
PRAD	TCGA-KK-A8I8-01	HSP90AA1	ENST00000216281.8,ENST00000334701.7	chr14	102547385:102548158:102548447:102548781:102549370:102549639,	102548448	102548781	102548543	102548543	Nonsense_Mutation	A	T	p.L787*
PRAD	TCGA-ZG-A9L0-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
PRAD	TCGA-XJ-A9DI-01	USF2	ENST00000343550.5	chr19	35760705:35760906:35761349:35761500:35761620:35761708,35760503:35760602:35761349:35761500:35761620:35761708,	35761350	35761500	35761491	35761491	Nonsense_Mutation	C	T	p.Q191*
PRAD	TCGA-XJ-A9DI-01	USF2	ENST00000607959.1	chr19	35760503:35760602:35760705:35761500:35761620:35761708,	35760706	35761500	35761491	35761491	Nonsense_Mutation	C	T	p.Q191*
PRAD	TCGA-H9-A6BX-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103828	47103828	Nonsense_Mutation	G	A	p.R2040*
PRAD	TCGA-HC-A6HY-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90048354	90048354	Nonsense_Mutation	C	T	p.Q49*
PRAD	TCGA-V1-A9ZI-01	TOR1AIP1	ENST00000474875.1,ENST00000528443.2,ENST00000435319.4,ENST00000527391.1,ENST00000606911.2,ENST00000531630.2,ENST00000271583.3	chr1	179870436:179870523:179873100:179873157:179876957:179876999,	179873101	179873157	179873145	179873145	Nonsense_Mutation	C	T	p.Q262*
PRAD	TCGA-ZG-A9LY-01	MYCT1	ENST00000532295.1	chr6	153019095:153019233:153042876:153043388:153043897:153044419,	153042877	153043388	153043116	153043116	Nonsense_Mutation	C	T	p.R146*
PRAD	TCGA-KC-A7FA-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860386	96860386	Nonsense_Mutation	C	G	p.S459*
PRAD	TCGA-YL-A8SC-01	SCYL1	ENST00000279270.6,ENST00000524944.1,ENST00000533862.1,ENST00000270176.5,ENST00000420247.2,ENST00000525364.1,ENST00000527009.1,ENST00000531601.1	chr11	65300218:65300276:65302697:65302853:65303423:65303612,	65302698	65302853	65302785	65302785	Nonsense_Mutation	G	T	p.E440*
PRAD	TCGA-HC-A9TH-01	ARNTL2	ENST00000542388.1,ENST00000261178.5,ENST00000544915.1,ENST00000395901.2,ENST00000546179.1,ENST00000311001.5,ENST00000266503.5,ENST00000457040.2	chr12	27540160:27540253:27542111:27542229:27543028:27543172,	27542112	27542229	27542200	27542200	Nonsense_Mutation	C	A	p.S215*
PRAD	TCGA-YL-A8S8-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10127495:10127606:10128817:10128948:10130132:10130226,	10128818	10128948	10128872	10128872	Nonsense_Mutation	T	A	p.C1130*
PRAD	TCGA-YL-A8S8-01	SCNM1	ENST00000368902.1,ENST00000602841.1,ENST00000461862.1,ENST00000368905.4	chr1	151138946:151139017:151139409:151139498:151139596:151139694,	151139410	151139498	151139435	151139435	Nonsense_Mutation	C	T	p.R50*
PRAD	TCGA-YL-A8S8-01	USHBP1	ENST00000252597.3,ENST00000594190.1,ENST00000324554.5	chr19	17373637:17373799:17374810:17374959:17375054:17375156,	17374811	17374959	17374839	17374839	Nonsense_Mutation	C	A	p.E59*
PRAD	TCGA-EJ-5510-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1	chr3	64547253:64547427:64554043:64554211:64579933:64580110,	64554044	64554211	64554181	64554181	Nonsense_Mutation	G	A	p.Q1463*
PRAD	TCGA-EJ-7784-01	TSKS	ENST00000246801.3,ENST00000358830.3	chr19	50243315:50243440:50245141:50245277:50247487:50247661,	50245142	50245277	50245231	50245231	Nonsense_Mutation	G	A	p.R470*
PRAD	TCGA-EJ-5519-01	TANGO6	ENST00000568361.1,ENST00000562000.1,ENST00000261778.1	chr16	69007930:69008071:69056730:69056882:69074210:69074324,	69056731	69056882	69056743	69056743	Nonsense_Mutation	C	G	p.S952*
PRAD	TCGA-EJ-5519-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000522756.1,ENST00000423620.2	chr8	95674728:95674783:95676924:95677035:95677154:95677287,	95676925	95677035	95676990	95676990	Nonsense_Mutation	C	G	p.S237*
PRAD	TCGA-EJ-5519-01	SEPT4	ENST00000317268.3,ENST00000579371.1,ENST00000393086.1,ENST00000457347.2,ENST00000426861.1,ENST00000577440.1,ENST00000317256.6,ENST00000584488.1,ENST00000580844.1,ENST00000583114.1,ENST00000583273.1,ENST00000580796.1,ENST00000412945.3	chr17	56598358:56598521:56598614:56598711:56598905:56599007,	56598615	56598711	56598642	56598642	Nonsense_Mutation	G	A	p.R378*
PRAD	TCGA-HC-8213-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
PRAD	TCGA-X4-A8KQ-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197059979:197060171:197061036:197061186:197062181:197062391,	197061037	197061186	197061108	197061108	Nonsense_Mutation	G	A	p.Q3125*
PRAD	TCGA-KK-A6E2-01	RRNAD1	ENST00000368216.4	chr1	156703168:156703312:156703800:156704285:156705516:156705592,	156703801	156704285	156704062	156704062	Nonsense_Mutation	C	T	p.Q300*
PRAD	TCGA-HC-7209-01	LDB3	ENST00000372056.4,ENST00000429277.2	chr10	88441192:88441560:88446825:88447029:88451652:88451822,	88446826	88447029	88447004	88447004	Nonsense_Mutation	C	T	p.Q290*
PRAD	TCGA-HC-7075-01	CTPS2	ENST00000359276.4	chrX	16717045:16717216:16720859:16721064:16730457:16730775,	16720860	16721064	16720991	16720991	Nonsense_Mutation	G	T	p.S12*
PRAD	TCGA-HC-7075-01	STRN4	ENST00000263280.6,ENST00000600358.3,ENST00000435164.2,ENST00000391910.3,ENST00000593979.2,ENST00000539396.1	chr19	47234092:47234130:47236295:47236493:47240079:47240158,	47236296	47236493	47236332	47236332	Nonsense_Mutation	G	T	p.S234*
PRAD	TCGA-XA-A8JR-01	RREB1	ENST00000334984.6	chr6	7229229:7232140:7240670:7240835:7246656:7247454,7229229:7232140:7240670:7240835:7248743:7249457,	7240671	7240835	7240690	7240690	Nonsense_Mutation	T	A	p.C1276*
PRAD	TCGA-ZG-A9L2-01	SOS1	ENST00000428721.2,ENST00000461545.1,ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39262352:39262451:39262530:39262641:39278284:39278428,	39262531	39262641	39262596	39262596	Nonsense_Mutation	G	A	p.R304*
PRAD	TCGA-HC-A76W-01	PPP2R5B	ENST00000526559.1,ENST00000532850.1,ENST00000164133.2	chr11	64693319:64693405:64694183:64694380:64695273:64695375,	64694184	64694380	64694285	64694285	Nonsense_Mutation	G	T	p.E101*
PRAD	TCGA-HC-A76W-01	TJP3	ENST00000589378.1,ENST00000539908.2,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9	chr19	3730352:3730704:3731932:3732036:3733750:3733910,	3731933	3732036	3731956	3731956	Nonsense_Mutation	C	T	p.Q213*
PRAD	TCGA-HC-A76W-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000348417.2	chr3	129183477:129183624:129185732:129185909:129188184:129188260,	129185733	129185909	129185799	129185799	Nonsense_Mutation	T	G	p.Y261*
PRAD	TCGA-EJ-A7NG-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
PRAD	TCGA-KK-A59X-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000443427.1,ENST00000338799.5,ENST00000427531.2	chr6	152201791:152201906:152265307:152265643:152332790:152332929,	152265308	152265643	152265313	152265313	Nonsense_Mutation	C	T	p.R256*
PRAD	TCGA-EJ-5496-01	OSBPL10	ENST00000438237.2,ENST00000396556.2,ENST00000429492.2	chr3	31705570:31705724:31710133:31710316:31712288:31712475,	31710134	31710316	31710253	31710253	Nonsense_Mutation	C	T	p.W659*
PRAD	TCGA-EJ-7317-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000514617.1,ENST00000507873.2,ENST00000502925.1	chr4	48550706:48550810:48551489:48551640:48552608:48552721,	48551490	48551640	48551612	48551612	Nonsense_Mutation	C	T	p.W1554*
PRAD	TCGA-V1-A8ML-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938585	44938585	Nonsense_Mutation	G	T	p.E1045*
PRAD	TCGA-HC-A6AS-01	TPCN2	ENST00000294309.3,ENST00000542467.1	chr11	68822188:68822265:68822642:68822820:68825045:68825162,	68822643	68822820	68822730	68822730	Nonsense_Mutation	C	A	p.Y113*
PRAD	TCGA-G9-6354-01	GMPR2	ENST00000559409.1	chr14	24702424:24702546:24702684:24702792:24704942:24705022,	24702685	24702792	24702732	24702732	Nonsense_Mutation	C	A	p.Y63*
PRAD	TCGA-G9-6354-01	GMPR2	ENST00000558701.1,ENST00000559287.1,ENST00000559102.1	chr14	24702424:24702546:24702684:24702799:24704942:24705022,	24702685	24702799	24702732	24702732	Nonsense_Mutation	C	A	p.Y63*
PRAD	TCGA-G9-6354-01	GMPR2	ENST00000456667.3	chr14	24702424:24702546:24702684:24702804:24704942:24705022,24702424:24702546:24702684:24702804:24705172:24705211,	24702685	24702804	24702732	24702732	Nonsense_Mutation	C	A	p.Y63*
PRAD	TCGA-KK-A8I6-01	PEX16	ENST00000378750.5,ENST00000528674.1,ENST00000525229.1,ENST00000525192.1,ENST00000241041.3,ENST00000532681.1	chr11	45937046:45937119:45937253:45937387:45937777:45937854,	45937254	45937387	45937359	45937359	Nonsense_Mutation	C	T	p.W85*
PRAD	TCGA-CH-5765-01	CLIP1	ENST00000537178.1	chr12	122821178:122821295:122825299:122826244:122837272:122837333,	122825300	122826244	122825728	122825728	Nonsense_Mutation	C	A	p.E664*
PRAD	TCGA-CH-5765-01	CLIP1	ENST00000361654.4	chr12	122821178:122821295:122825527:122826244:122837272:122837333,	122825528	122826244	122825728	122825728	Nonsense_Mutation	C	A	p.E664*
PRAD	TCGA-XK-AAJP-01	LIPI	ENST00000536861.1	chr21	15558281:15558390:15561354:15561740:15583120:15583166,	15561355	15561740	15561724	15561724	Nonsense_Mutation	G	T	p.C42*
PRAD	TCGA-KK-A7B1-01	RPL10A	ENST00000467020.1	chr6	35436578:35436650:35436723:35437306:35437955:35438128,	35436724	35437306	35437258	35437258	Nonsense_Mutation	G	T	p.E88*
PRAD	TCGA-KK-A7B1-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000464112.1	chr6	35436723:35436804:35437157:35437306:35437955:35438128,	35437158	35437306	35437258	35437258	Nonsense_Mutation	G	T	p.E88*
PRAD	TCGA-KK-A7B0-01	ENOPH1	ENST00000505846.1,ENST00000273920.3,ENST00000509635.1	chr4	83375874:83376007:83378067:83378191:83381133:83382208,	83378068	83378191	83378116	83378116	Nonsense_Mutation	G	T	p.E191*
PRAD	TCGA-VN-A88L-01	HYDIN	ENST00000393567.2	chr16	70900071:70900232:70902472:70902691:70905939:70906082,	70902473	70902691	70902478	70902478	Nonsense_Mutation	G	A	p.R3769*
PRAD	TCGA-VN-A88P-01	PPP2R2B	ENST00000453001.1,ENST00000394414.1,ENST00000356826.3,ENST00000530902.1,ENST00000394409.3,ENST00000394411.4	chr5	146077640:146077707:146080607:146080705:146257564:146257758,	146080608	146080705	146080619	146080619	Nonsense_Mutation	G	A	p.R53*
PRAD	TCGA-CH-5739-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47266670:47266776:47269027:47269152:47273470:47273538,	47269028	47269152	47269054	47269054	Nonsense_Mutation	G	T	p.E383*
PRAD	TCGA-EJ-5498-01	KYNU	ENST00000264170.4,ENST00000409512.1	chr2	143787195:143787248:143790804:143790890:143797996:143798227,	143790805	143790890	143790837	143790837	Nonsense_Mutation	C	T	p.R330*
PRAD	TCGA-EJ-7330-01	KCNAB1	ENST00000490337.1,ENST00000302490.8,ENST00000461717.1,ENST00000475456.1,ENST00000489036.1,ENST00000497291.1,ENST00000471742.1	chr3	156183431:156183475:156192522:156192609:156232152:156232180,	156192523	156192609	156192555	156192555	Nonsense_Mutation	G	T	p.E184*
PRAD	TCGA-EJ-7330-01	KCNAB1	ENST00000476362.1	chr3	156183431:156183475:156192438:156192609:156232152:156232180,	156192439	156192609	156192555	156192555	Nonsense_Mutation	G	T	p.E184*
PRAD	TCGA-KK-A7AZ-01	PNLIP	ENST00000369221.2	chr10	118318671:118318795:118319927:118320036:118320983:118321148,	118319928	118320036	118320020	118320020	Nonsense_Mutation	C	T	p.Q385*
PRAD	TCGA-KK-A7AZ-01	EEF2	ENST00000309311.6	chr19	3983251:3983289:3984133:3984348:3985375:3985461,	3984134	3984348	3984159	3984159	Nonsense_Mutation	C	A	p.E65*
PRAD	TCGA-V1-A9ZK-01	TENM2	ENST00000403607.2	chr5	167551854:167552055:167553758:167553944:167589615:167589762,	167553759	167553944	167553796	167553796	Nonsense_Mutation	C	A	p.C628*
PRAD	TCGA-V1-A9ZK-01	TENM2	ENST00000518659.1,ENST00000519204.1,ENST00000520394.1	chr5	167551854:167552055:167553758:167553971:167589615:167589762,	167553759	167553971	167553796	167553796	Nonsense_Mutation	C	A	p.C628*
PRAD	TCGA-FC-A8O0-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116632180	116632180	Nonsense_Mutation	C	A	p.E49*
PRAD	TCGA-ZG-A9MC-01	SYT9	ENST00000318881.6	chr11	7273400:7273562:7324269:7324621:7334625:7335172,	7324270	7324621	7324413	7324413	Nonsense_Mutation	G	T	p.E97*
PRAD	TCGA-XJ-A9DX-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727794	137727794	Nonsense_Mutation	G	T	p.E825*
PRAD	TCGA-XJ-A9DX-01	LNPEP	ENST00000231368.5,ENST00000395770.3	chr5	96360224:96360386:96362320:96362461:96363436:96363518,	96362321	96362461	96362364	96362364	Nonsense_Mutation	A	T	p.K923*
PRAD	TCGA-XJ-A9DX-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104337700	104337700	Nonsense_Mutation	C	T	p.Q456*
PRAD	TCGA-CH-5761-01	CNTN4	ENST00000422330.1,ENST00000418658.1,ENST00000455083.1,ENST00000397461.1,ENST00000427741.1	chr3	2380861:2380917:2613099:2613242:2777898:2778007,	2613100	2613242	2613235	2613235	Nonsense_Mutation	C	A	p.C16*
PRAD	TCGA-V1-A8X3-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449429	155449429	Nonsense_Mutation	G	A	p.Q1078*
PRAD	TCGA-KC-A7FD-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72833925:72834028:72845475:72845676:72845803:72845937,	72845476	72845676	72845538	72845538	Nonsense_Mutation	G	A	p.Q1268*
PRAD	TCGA-KK-A8IB-01	TTL	ENST00000233336.6,ENST00000476615.1	chr2	113258862:113258918:113260488:113260758:113277858:113278002,	113260489	113260758	113260632	113260632	Nonsense_Mutation	C	A	p.S250*
PRAD	TCGA-KK-A8IB-01	UBXN2B	ENST00000399598.2,ENST00000521796.1,ENST00000523409.1,ENST00000522978.1	chr8	59329488:59329512:59343077:59343228:59345718:59345802,	59343078	59343228	59343160	59343160	Nonsense_Mutation	G	T	p.E91*
PRAD	TCGA-EJ-7314-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170627925	170627925	Nonsense_Mutation	C	T	p.Q483*
PRAD	TCGA-KK-A6E8-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467116	58467116	Nonsense_Mutation	G	A	p.Q765*
PRAD	TCGA-HC-8216-01	CREB3L3	ENST00000602257.1,ENST00000598894.1,ENST00000595923.1,ENST00000078445.2	chr19	4164505:4164637:4170136:4170205:4171087:4171172,4168347:4168454:4170136:4170205:4171087:4171172,	4170137	4170205	4170156	4170156	Nonsense_Mutation	C	G	p.S245*
PRAD	TCGA-CH-5767-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539834	120539834	Nonsense_Mutation	A	T	p.C179*
PRAD	TCGA-EJ-A8FS-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155408117:155408859:155429587:155429689:155447676:155452240,	155429588	155429689	155429593	155429593	Nonsense_Mutation	G	C	p.S1694*
PRAD	TCGA-HC-7212-01	NCOR1	ENST00000458113.2	chr17	15968798:15969008:15971207:15971435:15973478:15973612,15968798:15969005:15971207:15971435:15973478:15973612,	15971208	15971435	15971376	15971376	Nonsense_Mutation	G	A	p.Q1525*
PRAD	TCGA-HC-7212-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469888	47469888	Nonsense_Mutation	G	A	p.R52*
PRAD	TCGA-2A-A8VT-01	ANXA2	ENST00000421017.2,ENST00000396024.3,ENST00000451270.2,ENST00000560014.1,ENST00000332680.4	chr15	60639865:60639888:60641273:60641396:60643391:60643450,	60641274	60641396	60641330	60641330	Nonsense_Mutation	T	A	p.K302*
PRAD	TCGA-2A-A8VT-01	GOLGA3	ENST00000204726.3,ENST00000456883.2,ENST00000450791.2	chr12	133353219:133353342:133353543:133353676:133354251:133354391,	133353544	133353676	133353579	133353579	Nonsense_Mutation	C	A	p.E1274*
PRAD	TCGA-2A-A8VT-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31812257:31812408:31814985:31815101:31815199:31815350,	31814986	31815101	31815069	31815069	Nonsense_Mutation	G	A	p.R331*
PRAD	TCGA-HI-7171-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28*
PRAD	TCGA-ZG-A9LM-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31288240:31288370:31289287:31289430:31308834:31308948,	31289288	31289430	31289353	31289353	Nonsense_Mutation	C	T	p.Q427*
PRAD	TCGA-ZG-A9LM-01	IL24	ENST00000391929.3,ENST00000367093.3	chr1	207071177:207071221:207072661:207072860:207073639:207073702,	207072662	207072860	207072830	207072830	Nonsense_Mutation	G	A	p.W71*
PRAD	TCGA-ZG-A9LM-01	IL24	ENST00000294984.2	chr1	207071177:207071221:207072664:207072860:207073639:207073702,	207072665	207072860	207072830	207072830	Nonsense_Mutation	G	A	p.W71*
PRAD	TCGA-EJ-A46D-01	PEX3	ENST00000367591.4	chr6	143772116:143772252:143780221:143780353:143784052:143784134,	143780222	143780353	143780272	143780272	Nonsense_Mutation	G	T	p.E42*
PRAD	TCGA-EJ-A46G-01	B4GALT6	ENST00000237019.7,ENST00000306851.5	chr18	29210921:29211109:29218606:29218723:29225317:29225442,	29218607	29218723	29218612	29218612	Nonsense_Mutation	C	A	p.E195*
PRAD	TCGA-V1-A8MK-01	BIRC5	ENST00000586192.1	chr17	76210760:76210870:76212046:76212147:76212744:76212862,	76212047	76212147	76212096	76212096	Nonsense_Mutation	C	T	p.R91*
PRAD	TCGA-V1-A8MK-01	BIRC5	ENST00000592115.1	chr17	76210760:76210870:76212046:76212862:76218908:76219060,	76212047	76212862	76212096	76212096	Nonsense_Mutation	C	T	p.R91*
PRAD	TCGA-V1-A8MK-01	BIRC5	ENST00000301633.4,ENST00000587746.1	chr17	76210760:76210870:76212046:76212115:76212744:76212862,	76212047	76212115	76212096	76212096	Nonsense_Mutation	C	T	p.R91*
PRAD	TCGA-KK-A8I4-01	KLK12	ENST00000530943.2,ENST00000250352.11,ENST00000529888.1,ENST00000526824.1	chr19	51532597:51532713:51534043:51534177:51537235:51537395,	51534044	51534177	51534119	51534119	Nonsense_Mutation	G	T	p.C62*
PRAD	TCGA-ZG-A9M4-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
PRAD	TCGA-HC-7752-01	CCDC57	ENST00000389641.4,ENST00000327026.3,ENST00000419322.2,ENST00000392347.1,ENST00000392343.3	chr17	80115623:80115824:80121075:80121233:80129576:80129608,	80121076	80121233	80121090	80121090	Nonsense_Mutation	G	A	p.R676*
PRAD	TCGA-HC-7752-01	MRPL47	ENST00000259038.2	chr3	179319517:179319578:179320439:179320525:179322314:179322428,	179320440	179320525	179320488	179320488	Nonsense_Mutation	C	A	p.E66*
PRAD	TCGA-KK-A59V-01	CCDC178	ENST00000402325.1,ENST00000581524.1	chr18	30517974:30518055:30554510:30554645:30672724:30672874,30517974:30518055:30554510:30554645:30791859:30792019,	30554511	30554645	30554609	30554609	Nonsense_Mutation	G	A	p.Q809*
PRAD	TCGA-KK-A59V-01	SPICE1	ENST00000496105.1,ENST00000295872.4	chr3	113179463:113179611:113184499:113184631:113186985:113187251,	113184500	113184631	113184565	113184565	Nonsense_Mutation	G	A	p.R408*
PRAD	TCGA-KK-A59V-01	GIGYF2	ENST00000463554.1,ENST00000440945.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233613696:233613792:233620932:233621044:233625189:233625301,	233620933	233621044	233621023	233621023	Nonsense_Mutation	C	T	p.R120*
PRAD	TCGA-KK-A59V-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223488990:223489198:223489432:223489494:223493555:223493607,	223489433	223489494	223489482	223489482	Nonsense_Mutation	G	A	p.R305*
PRAD	TCGA-KK-A59V-01	LIMCH1	ENST00000511496.1	chr4	41600936:41601043:41607910:41608021:41615482:41615551,	41607911	41608021	41608016	41608016	Nonsense_Mutation	C	T	p.R161*
PRAD	TCGA-KK-A59V-01	FBXW9	ENST00000393261.3,ENST00000544494.1,ENST00000587296.1,ENST00000380339.3,ENST00000587955.1	chr19	12800029:12800104:12800185:12800251:12800354:12800444,	12800186	12800251	12800212	12800212	Nonsense_Mutation	G	A	p.R456*
PRAD	TCGA-J4-A67S-01	ERMAP	ENST00000372514.3,ENST00000372517.2	chr1	43296114:43296204:43296438:43296786:43300708:43300825,	43296439	43296786	43296726	43296726	Nonsense_Mutation	C	T	p.R35*
PRAD	TCGA-G9-6329-01	PKD2L1	ENST00000318222.3,ENST00000528248.1,ENST00000338519.3	chr10	102048152:102048235:102048728:102048813:102049771:102049895,	102048729	102048813	102048747	102048747	Nonsense_Mutation	G	A	p.Q773*
PRAD	TCGA-TP-A8TT-01	ZCCHC7	ENST00000461038.1,ENST00000336755.5,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2	chr9	37302184:37302228:37304184:37304310:37305540:37305711,	37304185	37304310	37304308	37304308	Nonsense_Mutation	C	T	p.R260*
PRAD	TCGA-G9-6384-01	CD1B	ENST00000368168.3	chr1	158299324:158299438:158299641:158299920:158300585:158300815,	158299642	158299920	158299693	158299693	Nonsense_Mutation	G	A	p.R186*
PRAD	TCGA-G9-6384-01	KIAA0556	ENST00000261588.4	chr16	27561472:27561498:27585221:27585277:27629745:27629822,	27585222	27585277	27585275	27585275	Nonsense_Mutation	G	T	p.E21*
PRAD	TCGA-XK-AAJR-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90949253:90949303:90955480:90955594:90958367:90958523,	90955481	90955594	90955507	90955507	Nonsense_Mutation	C	A	p.E720*
PRAD	TCGA-HC-7820-01	ARIH2	ENST00000486316.1,ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000452385.1,ENST00000474936.2	chr3	49002351:49002415:49004557:49004708:49005966:49006014,	49004558	49004708	49004609	49004609	Nonsense_Mutation	C	T	p.R147*
PRAD	TCGA-HC-7820-01	CD38	ENST00000502843.1	chr4	15818218:15818263:15835839:15835925:15839714:15839788,	15835840	15835925	15835906	15835906	Nonsense_Mutation	G	A	p.W189*
PRAD	TCGA-Y6-A8TL-01	KRT4	ENST00000458244.2,ENST00000548097.1,ENST00000293774.4,ENST00000551956.1	chr12	53201142:53201177:53201427:53201648:53202077:53202194,	53201428	53201648	53201525	53201525	Nonsense_Mutation	G	A	p.R491*
PRAD	TCGA-CH-5794-01	RAI14	ENST00000265109.3,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000503673.1,ENST00000428746.2,ENST00000397449.1	chr5	34823060:34824596:34826434:34826584:34829836:34829902,	34826435	34826584	34826505	34826505	Nonsense_Mutation	C	G	p.S907*
PRAD	TCGA-VP-A87D-01	RBM11	ENST00000468788.1	chr21	15588498:15588603:15591873:15592046:15593417:15593490,	15591874	15592046	15592040	15592040	Nonsense_Mutation	C	T	p.R85*
PRAD	TCGA-VP-A87D-01	RBM11	ENST00000400577.3,ENST00000461088.1	chr21	15588498:15588603:15591883:15592046:15593417:15593490,	15591884	15592046	15592040	15592040	Nonsense_Mutation	C	T	p.R85*
PRAD	TCGA-EJ-8472-01	CYP2F1	ENST00000331105.2,ENST00000531409.1,ENST00000532164.2	chr19	41622359:41622522:41626251:41626401:41627362:41627523,	41626252	41626401	41626275	41626275	Nonsense_Mutation	C	T	p.R120*
PRAD	TCGA-ZG-A9KY-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37627766:37628016:37646809:37646986:37649003:37649143,	37646810	37646986	37646964	37646964	Nonsense_Mutation	C	T	p.Q696*
PRAD	TCGA-EJ-5531-01	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146824230	146824230	Nonsense_Mutation	G	A	p.Q61*
PRAD	TCGA-HC-7231-01	SULT1A1	ENST00000562058.1,ENST00000395609.1,ENST00000564818.1	chr16	28621251:28621512:28631383:28631454:28634451:28634573,	28631384	28631454	28631396	28631396	Nonsense_Mutation	C	T	p.W42*
PRAD	TCGA-HC-7231-01	CPPED1	ENST00000381774.4	chr16	12758635:12758972:12798480:12798906:12875041:12875260,	12798481	12798906	12798661	12798661	Nonsense_Mutation	G	A	p.Q179*
PRAD	TCGA-XQ-A8TA-01	VTCN1	ENST00000328189.3	chr1	117690234:117690404:117695712:117695991:117699195:117699543,117690234:117690404:117695712:117695991:117712728:117712793,	117695713	117695991	117695923	117695923	Nonsense_Mutation	G	A	p.R172*
PRAD	TCGA-XQ-A8TA-01	KIAA0319	ENST00000543707.1	chr6	24596100:24596846:24601276:24601436:24645963:24646383,24596664:24596846:24601276:24601436:24645854:24646249,	24601277	24601436	24601303	24601303	Nonsense_Mutation	G	T	p.S10*
PRAD	TCGA-G9-6363-01	DNAH2	ENST00000574518.1,ENST00000389173.2,ENST00000572933.1	chr17	7680096:7680207:7680763:7680952:7681394:7681498,	7680764	7680952	7680786	7680786	Nonsense_Mutation	C	G	p.S1694*
PRAD	TCGA-G9-6363-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251838	81251838	Nonsense_Mutation	G	A	p.Q538*
PRAD	TCGA-YL-A8HO-01	DDX3Y	ENST00000454054.1,ENST00000360160.4,ENST00000336079.3,ENST00000440554.1	chrY	15021270:15021318:15023750:15023880:15024638:15024794,	15023751	15023880	15023867	15023867	Nonsense_Mutation	G	T	p.G90*
PRAD	TCGA-YL-A8HO-01	KPNA1	ENST00000493510.1,ENST00000344337.6,ENST00000482287.1,ENST00000464940.1,ENST00000465882.1	chr3	122172756:122172848:122180070:122180165:122182788:122182888,	122180071	122180165	122180094	122180094	Nonsense_Mutation	G	A	p.R137*
PRAD	TCGA-HC-A4ZV-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101608866:101609070:101612576:101612669:101620721:101620791,	101612577	101612669	101612611	101612611	Nonsense_Mutation	A	T	p.L247*
PRAD	TCGA-CH-5788-01	ELMO3	ENST00000571587.1	chr16	67234094:67234264:67234353:67234453:67234559:67234709,67233853:67233904:67234353:67234453:67234559:67234709,	67234354	67234453	67234423	67234423	Nonsense_Mutation	G	A	p.W214*
PRAD	TCGA-EJ-5512-01	AGK	ENST00000473884.1,ENST00000494688.1,ENST00000355413.4,ENST00000535825.1,ENST00000473247.1	chr7	141313945:141313978:141315270:141315365:141321531:141321590,	141315271	141315365	141315346	141315346	Nonsense_Mutation	G	T	p.E167*
PRAD	TCGA-J4-A67K-01	PER2	ENST00000254658.3,ENST00000254657.3	chr2	239159191:239159384:239160239:239160402:239161552:239162343,	239160240	239160402	239160327	239160327	Nonsense_Mutation	C	A	p.E1063*
PRAD	TCGA-EJ-7115-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138451634	138451634	Nonsense_Mutation	C	A	p.E537*
PRAD	TCGA-ZG-A9LZ-01	DLG4	ENST00000491753.1	chr17	7095211:7095321:7096263:7096436:7096801:7096876,7094585:7094677:7096263:7096436:7096801:7096876,	7096264	7096436	7096281	7096281	Nonsense_Mutation	G	A	p.R660*
PRAD	TCGA-KK-A8II-01	TEX26	ENST00000380473.3	chr13	31526796:31526962:31531009:31531166:31540358:31540535,	31531010	31531166	31531142	31531142	Nonsense_Mutation	A	T	p.R149*
PRAD	TCGA-QU-A6IM-01	NRG1	ENST00000405005.3,ENST00000521670.1,ENST00000522402.1	chr8	32585466:32585596:32599525:32599593:32600192:32600251,32585466:32585596:32599525:32599593:32611889:32611941,	32599526	32599593	32599590	32599590	Nonsense_Mutation	G	T	p.E233*
PRAD	TCGA-EJ-5521-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17617221:17617374:17622441:17622564:17623623:17623772,	17622442	17622564	17622555	17622555	Nonsense_Mutation	T	A	p.K691*
PRAD	TCGA-CH-5762-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101585892:101586188:101589246:101589303:101596338:101596388,	101589247	101589303	101589258	101589258	Nonsense_Mutation	G	A	p.Q406*
PRAD	TCGA-CH-5762-01	STK17A	ENST00000319357.5	chr7	43647854:43647999:43659195:43659322:43663170:43663219,	43659196	43659322	43659292	43659292	Nonsense_Mutation	C	T	p.R221*
PRAD	TCGA-EJ-8474-01	HNRNPD	ENST00000503822.1,ENST00000543098.1,ENST00000352301.4	chr4	83279910:83279973:83280623:83280792:83292680:83292737,83279910:83279973:83280623:83280792:83294598:83294639,	83280624	83280792	83280638	83280638	Nonsense_Mutation	C	A	p.E149*
PRAD	TCGA-J4-A83M-01	IFI16	ENST00000430894.2,ENST00000368131.4,ENST00000359709.3,ENST00000295809.7,ENST00000493884.1	chr1	158990130:158990319:159002313:159002481:159015086:159015254,	159002314	159002481	159002391	159002391	Nonsense_Mutation	T	A	p.Y413*
PRAD	TCGA-J4-A83M-01	ATP10B	ENST00000327245.5	chr5	160059135:160059374:160061360:160061613:160063188:160063316,	160061361	160061613	160061406	160061406	Nonsense_Mutation	G	A	p.R446*
PRAD	TCGA-YL-A9WY-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926499	1926499	Nonsense_Mutation	C	A	p.E348*
PRAD	TCGA-YL-A9WY-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926499	1926499	Nonsense_Mutation	C	A	p.E348*
PRAD	TCGA-V1-A8WW-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944227	235944227	Nonsense_Mutation	G	A	p.R1718*
PRAD	TCGA-CH-5752-01	METTL25	ENST00000248306.3,ENST00000547357.1	chr12	82783594:82783701:82792573:82793173:82796761:82796909,	82792574	82793173	82792603	82792603	Nonsense_Mutation	C	A	p.Y187*
PRAD	TCGA-ZG-A8QZ-01	MYLK4	ENST00000274643.7	chr6	2679513:2679642:2680454:2680525:2683254:2683396,	2680455	2680525	2680489	2680489	Nonsense_Mutation	G	A	p.Q242*
PRAD	TCGA-KK-A6E4-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000342992.6,ENST00000460472.2	chr2	179393000:179393154:179393254:179393946:179394686:179394843,	179393255	179393946	179393601	179393601	Nonsense_Mutation	A	C	p.L35626*
PRAD	TCGA-KK-A6E4-01	SYNCRIP	ENST00000355238.6,ENST00000369622.3	chr6	86328535:86328657:86328985:86329135:86332199:86332405,	86328986	86329135	86329033	86329033	Nonsense_Mutation	T	A	p.K371*
PRAD	TCGA-V1-A9ZG-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72832434	72832434	Nonsense_Mutation	C	A	p.E1383*
PRAD	TCGA-J9-A8CM-01	PPM1A	ENST00000325658.3	chr14	60716377:60716395:60749401:60750255:60752341:60752459,60717148:60717199:60749401:60750255:60752341:60752459,	60749402	60750255	60749576	60749576	Nonsense_Mutation	C	A	p.S52*
PRAD	TCGA-EJ-A65B-01	B3GALNT2	ENST00000494378.1,ENST00000478199.2	chr1	235643419:235643465:235647637:235647831:235657990:235658138,	235647638	235647831	235647823	235647823	Nonsense_Mutation	G	A	p.Q124*
PRAD	TCGA-EJ-A65B-01	ABCC6	ENST00000205557.7	chr16	16255294:16255421:16256849:16257049:16259479:16259635,	16256850	16257049	16256866	16256866	Nonsense_Mutation	G	A	p.R1164*
PRAD	TCGA-HC-7233-01	CSMD3	ENST00000343508.3,ENST00000297405.5,ENST00000339701.3,ENST00000352409.3	chr8	113314021:113314195:113316949:113317144:113318235:113318421,	113316950	113317144	113317094	113317094	Nonsense_Mutation	G	A	p.R2708*
PRAD	TCGA-EJ-7788-01	RALBP1	ENST00000019317.4,ENST00000383432.3	chr18	9516842:9517301:9522157:9522507:9524591:9524753,	9522158	9522507	9522268	9522268	Nonsense_Mutation	C	T	p.R272*
PRAD	TCGA-EJ-5530-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204037451:204037576:204039869:204040010:204045104:204045235,	204039870	204040010	204039932	204039932	Nonsense_Mutation	C	G	p.S2100*
PRAD	TCGA-ZG-A9L5-01	SNX19	ENST00000533318.1,ENST00000528555.1	chr11	130780202:130780265:130781527:130781666:130786174:130786339,	130781528	130781666	130781573	130781573	Nonsense_Mutation	G	A	p.Q590*
PRAD	TCGA-ZG-A9L5-01	SNX19	ENST00000531608.1	chr11	130780202:130780265:130781345:130781666:130786174:130786339,	130781346	130781666	130781573	130781573	Nonsense_Mutation	G	A	p.Q590*
PRAD	TCGA-ZG-A9L5-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184930876	184930876	Nonsense_Mutation	G	A	p.W295*
PRAD	TCGA-EJ-A8FN-01	DPP10	ENST00000393147.2	chr2	115919810:115919849:116066814:116066929:116101392:116101488,115919178:115919605:116066814:116066929:116101392:116101488,	116066815	116066929	116066821	116066821	Nonsense_Mutation	G	T	p.G23*
PRAD	TCGA-HC-A6AP-01	TNIP1	ENST00000524280.1,ENST00000315050.7,ENST00000518977.1,ENST00000523200.1,ENST00000389378.2,ENST00000519339.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150418657:150418786:150422100:150422232:150422456:150422522,	150422101	150422232	150422163	150422163	Nonsense_Mutation	G	A	p.Q358*
PRAD	TCGA-VN-A88O-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471313	93471313	Nonsense_Mutation	C	A	p.E141*
PRAD	TCGA-VN-A88O-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471313	93471313	Nonsense_Mutation	C	A	p.E141*
PRAD	TCGA-CH-5772-01	ADAM15	ENST00000271836.6,ENST00000368412.3,ENST00000526491.1,ENST00000447332.3,ENST00000355956.2,ENST00000461564.2,ENST00000531455.1,ENST00000534019.1,ENST00000527418.1,ENST00000487956.2,ENST00000356955.2,ENST00000360674.4,ENST00000359280.4,ENST00000529473.1,ENST00000472434.1,ENST00000449910.2	chr1	155028407:155028476:155028555:155028725:155028861:155028883,	155028556	155028725	155028577	155028577	Nonsense_Mutation	C	T	p.R256*
PRAD	TCGA-HC-8261-01	SHROOM3	ENST00000296043.6	chr4	77675463:77676345:77677601:77678090:77680697:77680848,	77677602	77678090	77677870	77677870	Nonsense_Mutation	C	T	p.Q1660*
PRAD	TCGA-HC-8261-01	CHGA	ENST00000334654.4	chr14	93398021:93398047:93398714:93399196:93401145:93401294,93396063:93396160:93398714:93399196:93401145:93401294,	93398715	93399196	93399080	93399080	Nonsense_Mutation	C	T	p.R392*
PRAD	TCGA-G9-6362-01	ATG10	ENST00000458350.3,ENST00000504770.1,ENST00000282185.3,ENST00000513634.1	chr5	81283377:81283497:81354313:81354421:81443008:81443323,81283377:81283497:81354313:81354421:81460217:81460356,	81354314	81354421	81354375	81354375	Nonsense_Mutation	C	G	p.S57*
PRAD	TCGA-HC-A6HX-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000509912.1,ENST00000439128.2	chr4	170477082:170477246:170482630:170482705:170482837:170482888,	170482631	170482705	170482702	170482702	Nonsense_Mutation	C	A	p.E399*
PRAD	TCGA-YL-A8SJ-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115357727:115357832:115364367:115364679:115365520:115365628,	115364368	115364679	115364399	115364399	Nonsense_Mutation	C	T	p.W1407*
PRAD	TCGA-EJ-A7NF-01	MAP2	ENST00000475600.1,ENST00000199940.6	chr2	210574677:210574978:210588318:210588411:210590432:210590514,	210588319	210588411	210588329	210588329	Nonsense_Mutation	T	A	p.L396*
PRAD	TCGA-KK-A7AY-01	PTH1R	ENST00000418619.1,ENST00000430002.2,ENST00000427125.2,ENST00000313049.5,ENST00000449590.1,ENST00000428220.1	chr3	46943255:46943350:46944015:46944157:46944238:46944280,	46944016	46944157	46944116	46944116	Nonsense_Mutation	C	T	p.Q438*
PRAD	TCGA-G9-7525-01	TGM7	ENST00000452443.2	chr15	43577011:43577150:43579477:43579655:43579738:43579867,	43579478	43579655	43579553	43579553	Nonsense_Mutation	G	A	p.Q264*
PRAD	TCGA-KK-A7AP-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961930	41961930	Nonsense_Mutation	G	T	p.E280*
PRAD	TCGA-KK-A7AP-01	FGF7	ENST00000560765.2	chr15	49715456:49715637:49716228:49716780:49775347:49775451,	49716229	49716780	49716687	49716687	Nonsense_Mutation	A	T	p.R65*
PRAD	TCGA-KK-A7AP-01	FGF7	ENST00000560979.1	chr15	49715456:49715637:49716637:49716780:49775347:49775451,	49716638	49716780	49716687	49716687	Nonsense_Mutation	A	T	p.R65*
PRAD	TCGA-FC-A5OB-01	TINAG	ENST00000259782.4,ENST00000486436.1,ENST00000370864.3,ENST00000370869.3	chr6	54185376:54185440:54186094:54186184:54191599:54191638,	54186095	54186184	54186159	54186159	Nonsense_Mutation	G	T	p.E162*
PRAD	TCGA-EJ-7797-01	FOXP1	ENST00000493089.1,ENST00000498215.1,ENST00000468577.1,ENST00000475937.1,ENST00000318789.4,ENST00000472382.1,ENST00000485326.2,ENST00000491238.1,ENST00000327590.4	chr3	71090478:71090683:71096092:71096246:71161686:71161788,71090478:71090683:71096092:71096246:71101687:71101774,	71096093	71096246	71096126	71096126	Nonsense_Mutation	G	A	p.Q211*
PRAD	TCGA-HC-8262-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
PRAD	TCGA-M7-A725-01	SATB2	ENST00000457245.1,ENST00000443023.1,ENST00000417098.1,ENST00000260926.5	chr2	200213423:200213896:200233327:200233430:200245086:200245210,	200233328	200233430	200233398	200233398	Nonsense_Mutation	A	T	p.Y151*
PRAD	TCGA-HC-7080-01	CPNE3	ENST00000523072.1,ENST00000521271.1,ENST00000198765.4	chr8	87544736:87544808:87549790:87549874:87552472:87552562,	87549791	87549874	87549807	87549807	Nonsense_Mutation	C	A	p.S159*
PRAD	TCGA-CH-5737-01	NSUN4	ENST00000471871.1,ENST00000486270.1,ENST00000474844.1,ENST00000537428.1,ENST00000536062.1,ENST00000495427.1,ENST00000498008.1	chr1	46810472:46810816:46818539:46818700:46826375:46826500,46812592:46812747:46818539:46818700:46826375:46826500,	46818540	46818700	46818651	46818651	Nonsense_Mutation	C	A	p.S235*
PRAD	TCGA-CH-5738-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472907	70472907	Nonsense_Mutation	C	A	p.E67*
PRAD	TCGA-CH-5772-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128844094	128844094	Nonsense_Mutation	C	A	p.E986*
PRAD	TCGA-CH-5791-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47566179:47566241:47570032:47570164:47570301:47570439,	47570033	47570164	47570139	47570139	Nonsense_Mutation	G	T	p.S267*
PRAD	TCGA-CH-5794-01	XAB2	ENST00000534844.1,ENST00000358368.4	chr19	7690765:7690930:7691021:7691156:7692128:7692326,	7691022	7691156	7691147	7691147	Nonsense_Mutation	C	A	p.E178*
PRAD	TCGA-EJ-5508-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154390	19154390	Nonsense_Mutation	T	A	p.R139*
PRAD	TCGA-EJ-5512-01	TM4SF18	ENST00000470080.1,ENST00000296059.2	chr3	149039063:149039279:149040042:149040223:149042666:149042809,	149040043	149040223	149040066	149040066	Nonsense_Mutation	C	A	p.G190*
PRAD	TCGA-EJ-5518-01	USP28	ENST00000537642.1	chr11	113702641:113702715:113704141:113704279:113711319:113711479,	113704142	113704279	113704218	113704218	Nonsense_Mutation	G	C	p.S228*
PRAD	TCGA-EJ-7123-01	MTDH	ENST00000336273.3,ENST00000519934.1	chr8	98699656:98699833:98701265:98701331:98703179:98703266,	98701266	98701331	98701313	98701313	Nonsense_Mutation	G	T	p.G265*
PRAD	TCGA-EJ-7125-01	PYROXD2	ENST00000370575.4,ENST00000483923.1	chr10	100152698:100152840:100154952:100155050:100155147:100155209,	100154953	100155050	100154987	100154987	Nonsense_Mutation	C	A	p.G251*
PRAD	TCGA-EJ-7125-01	TPPP3	ENST00000290942.5,ENST00000393957.2,ENST00000564104.1,ENST00000562206.1	chr16	67424031:67424265:67424381:67424535:67424826:67425020,	67424382	67424535	67424507	67424507	Nonsense_Mutation	C	A	p.E73*
PRAD	TCGA-EJ-7125-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397042.3	chr20	37191174:37191340:37193998:37194121:37195738:37195875,	37193999	37194121	37194025	37194025	Nonsense_Mutation	G	T	p.G1241*
PRAD	TCGA-EJ-7125-01	RALGAPB	ENST00000397040.1,ENST00000262879.6	chr20	37191174:37191340:37194001:37194121:37195738:37195875,	37194002	37194121	37194025	37194025	Nonsense_Mutation	G	T	p.G1241*
PRAD	TCGA-EJ-7331-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62212265:62212530:62212696:62212846:62214145:62214232,	62212697	62212846	62212807	62212807	Nonsense_Mutation	C	A	p.G2368*
PRAD	TCGA-EJ-8472-01	ERMARD	ENST00000366773.3,ENST00000492738.1,ENST00000366771.1,ENST00000392095.4,ENST00000588451.1,ENST00000418781.3,ENST00000366772.2	chr6	170173414:170173498:170175365:170175442:170176035:170176161,	170175366	170175442	170175420	170175420	Nonsense_Mutation	G	T	p.E322*
PRAD	TCGA-EJ-8474-01	TRIM5	ENST00000483835.1	chr11	5685317:5685403:5686398:5686625:5686885:5686912,	5686399	5686625	5686409	5686409	Nonsense_Mutation	C	T	p.W371*
PRAD	TCGA-EJ-A65G-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143092407	143092407	Nonsense_Mutation	G	A	p.Q1157*
PRAD	TCGA-EJ-A7NF-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278436	114278436	Nonsense_Mutation	A	T	p.K2888*
PRAD	TCGA-G9-6342-01	SUCLG1	ENST00000430989.1	chr2	84668370:84668583:84670344:84670524:84676772:84676876,	84670345	84670524	84670410	84670410	Nonsense_Mutation	C	A	p.E106*
PRAD	TCGA-G9-6342-01	SUCLG1	ENST00000483605.1,ENST00000491642.1,ENST00000393868.2	chr2	84668370:84668583:84670407:84670524:84676772:84676876,	84670408	84670524	84670410	84670410	Nonsense_Mutation	C	A	p.E106*
PRAD	TCGA-G9-6342-01	DDC	ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000380984.4,ENST00000444733.1	chr7	50571690:50571757:50595834:50595978:50596905:50597040,	50595835	50595978	50595942	50595942	Nonsense_Mutation	C	A	p.G203*
PRAD	TCGA-G9-6342-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95182624:95182775:95183081:95183213:95186024:95186224,	95183082	95183213	95183129	95183129	Nonsense_Mutation	C	A	p.G290*
PRAD	TCGA-G9-6342-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39536376:39536500:39543618:39543734:39545138:39545297,	39543619	39543734	39543647	39543647	Nonsense_Mutation	C	A	p.E157*
PRAD	TCGA-G9-6351-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100933177:100933483:100962490:100962607:100996737:100996889,	100962491	100962607	100962584	100962584	Nonsense_Mutation	C	A	p.G605*
PRAD	TCGA-G9-6351-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000589389.1,ENST00000321919.9,ENST00000586901.1,ENST00000591451.1	chr16	4873821:4873908:4881979:4882222:4882774:4882913,	4881980	4882222	4882096	4882096	Nonsense_Mutation	C	A	p.G141*
PRAD	TCGA-G9-6361-01	NUDCD1	ENST00000239690.4,ENST00000427660.2	chr8	110305572:110305753:110308612:110308798:110334537:110334692,	110308613	110308798	110308624	110308624	Nonsense_Mutation	C	A	p.E150*
PRAD	TCGA-G9-6363-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145640307:145640461:145641072:145641369:145643053:145643082,	145641073	145641369	145641192	145641192	Nonsense_Mutation	G	A	p.W671*
PRAD	TCGA-G9-6365-01	ANAPC7	ENST00000455511.3,ENST00000471602.2,ENST00000450008.2	chr12	110813936:110814021:110815197:110815422:110819556:110819663,	110815198	110815422	110815282	110815282	Nonsense_Mutation	C	A	p.E459*
PRAD	TCGA-HC-7077-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819712	214819712	Nonsense_Mutation	G	T	p.E2267*
PRAD	TCGA-HC-7080-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228481895:228482116:228482480:228482744:228486154:228486168,	228482481	228482744	228482724	228482724	Nonsense_Mutation	C	A	p.S4309*
PRAD	TCGA-HC-7080-01	EHHADH	ENST00000231887.3,ENST00000456310.1	chr3	184909757:184911275:184922203:184922545:184935923:184936028,	184922204	184922545	184922218	184922218	Nonsense_Mutation	G	T	p.S299*
PRAD	TCGA-HC-7081-01	EPS15	ENST00000371733.3,ENST00000396122.4	chr1	51868106:51868197:51869090:51869204:51871576:51871780,	51869091	51869204	51869093	51869093	Nonsense_Mutation	C	A	p.E597*
PRAD	TCGA-HC-7081-01	VPS36	ENST00000378060.4	chr13	53007796:53007883:53008927:53009017:53010424:53010539,	53008928	53009017	53008975	53008975	Nonsense_Mutation	C	A	p.E132*
PRAD	TCGA-HC-7081-01	SNUPN	ENST00000569817.1,ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75897539:75897568:75899556:75899654:75901898:75901992,	75899557	75899654	75899625	75899625	Nonsense_Mutation	C	A	p.E178*
PRAD	TCGA-HC-7081-01	SLC7A10	ENST00000590036.1	chr19	33703756:33703908:33706674:33706879:33716458:33716704,	33706675	33706879	33706825	33706825	Nonsense_Mutation	G	T	p.S69*
PRAD	TCGA-HC-7820-01	RRM1	ENST00000423050.2,ENST00000533349.1,ENST00000532170.1,ENST00000300738.5	chr11	4128664:4128765:4130873:4130933:4132830:4132870,	4130874	4130933	4130915	4130915	Nonsense_Mutation	C	A	p.Y143*
PRAD	TCGA-HC-8256-01	FXYD3	ENST00000435734.2,ENST00000346446.5	chr19	35612125:35612149:35613668:35613858:35614174:35614212,	35613669	35613858	35613746	35613746	Nonsense_Mutation	G	T	p.E59*
PRAD	TCGA-KK-A8IJ-01	FTO	ENST00000394647.3,ENST00000464071.1,ENST00000471389.1	chr16	53907697:53907777:53913755:53913899:53922743:53922863,	53913756	53913899	53913760	53913760	Nonsense_Mutation	C	G	p.S327*
PRAD	TCGA-YL-A8SH-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717897	73717897	Nonsense_Mutation	T	G	p.Y2936*
PRAD	TCGA-YL-A9WH-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828630	72828630	Nonsense_Mutation	C	A	p.E2651*
READ	TCGA-F5-6814-01	ABCA10	ENST00000269081.4,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67189633:67189753:67189954:67190130:67190525:67190636,	67189955	67190130	67190014	67190014	Nonsense_Mutation	C	A	p.E488X
READ	TCGA-EI-6917-01	ABCA10	ENST00000524273.1,ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000432313.2,ENST00000523419.1,ENST00000522406.1	chr17	67215832:67215912:67217932:67218036:67218673:67218754,	67217933	67218036	67217935	67217935	Nonsense_Mutation	C	A	p.E101X
READ	TCGA-F5-6814-01	ABCA4	ENST00000370225.3,ENST00000535881.1,ENST00000536513.1	chr1	94463416:94463666:94466391:94466484:94466557:94466661,	94466392	94466484	94466426	94466426	Nonsense_Mutation	G	A	p.R2149X
READ	TCGA-EI-6885-01	ABCC2	ENST00000370449.4	chr10	101554169:101554225:101556853:101557088:101558963:101559127,	101556854	101557088	101556902	101556902	Nonsense_Mutation	G	A	p.W227X
READ	TCGA-EI-6917-01	ABCC2	ENST00000370449.4	chr10	101594136:101594292:101595847:101596047:101601723:101601850,	101595848	101596047	101595974	101595974	Nonsense_Mutation	C	T	p.R1181X
READ	TCGA-F5-6814-01	ACBD3	ENST00000366812.5	chr1	226332379:226334522:226340035:226340320:226342347:226342534,	226340036	226340320	226340195	226340195	Nonsense_Mutation	G	A	p.R406X
READ	TCGA-EI-6917-01	ACER3	ENST00000527508.1	chr11	76701582:76701618:76709806:76709865:76722373:76722419,	76709807	76709865	76709843	76709843	Nonsense_Mutation	C	T	p.R159X
READ	TCGA-EI-7004-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000396104.2	chr16	20491894:20492022:20492143:20492243:20494379:20494499,	20492144	20492243	20492235	20492235	Nonsense_Mutation	C	T	p.R501X
READ	TCGA-F5-6814-01	ACSM2B	ENST00000565232.1,ENST00000569327.1,ENST00000329697.6,ENST00000569364.1,ENST00000414188.2,ENST00000567001.1	chr16	20566764:20566798:20570558:20570769:20575990:20576175,	20570559	20570769	20570694	20570694	Nonsense_Mutation	C	A	p.E85X
READ	TCGA-EI-6506-01	ADCY2	ENST00000537121.1,ENST00000338316.4	chr5	7757561:7757699:7766799:7766919:7773044:7773214,	7766800	7766919	7766870	7766870	Nonsense_Mutation	C	G	p.S722X
READ	TCGA-EI-6917-01	ADD3	ENST00000360162.3,ENST00000356080.4,ENST00000277900.8	chr10	111879072:111879112:111879223:111879322:111881867:111882050,	111879224	111879322	111879263	111879263	Nonsense_Mutation	G	T	p.E301X
READ	TCGA-EI-6917-01	ADH5	ENST00000508511.1,ENST00000507102.1,ENST00000502590.1,ENST00000508146.1,ENST00000505652.1	chr4	100003176:100003267:100006265:100006367:100009839:100009853,	100006266	100006367	100006274	100006274	Nonsense_Mutation	G	A	p.R36X
READ	TCGA-F5-6814-01	AGA	ENST00000506853.1	chr4	178359898:178360011:178361426:178361580:178363402:178363563,178360729:178360842:178361426:178361580:178363402:178363563,	178361427	178361580	178361458	178361458	Nonsense_Mutation	C	A	p.E84X
READ	TCGA-F5-6814-01	AGBL3	ENST00000435976.2,ENST00000458078.1,ENST00000436302.2	chr7	134730224:134730325:134730549:134730662:134743919:134743986,	134730550	134730662	134730577	134730577	Nonsense_Mutation	G	T	p.E586X
READ	TCGA-F5-6813-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000432218.1,ENST00000337006.4,ENST00000376083.3	chr9	88236116:88236200:88247576:88248289:88257741:88257858,	88247577	88248289	88247986	88247986	Nonsense_Mutation	G	A	p.R496X
READ	TCGA-EI-6917-01	ALDH1A3	ENST00000558033.1,ENST00000329841.5	chr15	101433149:101433211:101434158:101434287:101436137:101436219,	101434159	101434287	101434285	101434285	Nonsense_Mutation	G	T	p.E222X
READ	TCGA-AF-6136-01	ALK	ENST00000389048.3	chr2	29436849:29436947:29443571:29443701:29445209:29445274,	29443572	29443701	29443592	29443592	Nonsense_Mutation	G	A	p.R1209X
READ	TCGA-F5-6814-01	ANK3	ENST00000514197.1	chr10	61819149:61819188:61819455:61819791:61822868:61823012,	61819456	61819791	61819660	61819660	Nonsense_Mutation	C	A	p.E1622X
READ	TCGA-F5-6814-01	ANK3	ENST00000355288.2,ENST00000503366.1,ENST00000373820.1,ENST00000373827.2	chr10	61819149:61819188:61819455:61819764:61822868:61823012,	61819456	61819764	61819660	61819660	Nonsense_Mutation	C	A	p.E1622X
READ	TCGA-EI-6917-01	ANKRD28	ENST00000439830.1	chr3	15807740:15807819:15836729:15836813:15900883:15900929,15807740:15807819:15836729:15836813:15855746:15855816,	15836730	15836813	15836768	15836768	Nonsense_Mutation	G	A	p.R25X
READ	TCGA-F5-6814-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562427	145562427	Nonsense_Mutation	G	A	p.W705X
READ	TCGA-AF-2690-01	ANKS1A	ENST00000535627.1,ENST00000360359.3	chr6	34937786:34937943:34949466:34949763:34950528:34950604,	34949467	34949763	34949617	34949617	Nonsense_Mutation	G	T	p.E196X
READ	TCGA-EI-6917-01	ANO10	ENST00000414522.2,ENST00000350459.4,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43596769:43596961:43602711:43602894:43607144:43607219,	43602712	43602894	43602729	43602729	Nonsense_Mutation	C	A	p.E297X
READ	TCGA-AG-3731-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
READ	TCGA-EI-6509-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
READ	TCGA-DC-6681-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112154723	112154723	Nonsense_Mutation	C	T	p.R314X
READ	TCGA-AH-6897-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112155011	112155011	Nonsense_Mutation	G	T	p.E410X
READ	TCGA-F5-6814-01	ARHGAP15	ENST00000548929.1,ENST00000548242.1,ENST00000295095.6	chr2	144193169:144193268:144194481:144194611:144244941:144245048,	144194482	144194611	144194492	144194492	Nonsense_Mutation	C	A	p.S195X
READ	TCGA-EI-6917-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909164	24909164	Nonsense_Mutation	G	A	p.R554X
READ	TCGA-F5-6814-01	ARPC1A	ENST00000262942.5,ENST00000432786.1	chr7	98930947:98931040:98935803:98935908:98941915:98942138,	98935804	98935908	98935878	98935878	Nonsense_Mutation	G	T	p.E33X
READ	TCGA-DC-6682-01	ARPC5L	ENST00000465124.1,ENST00000353214.2,ENST00000259477.6	chr9	127635972:127636043:127637253:127637430:127639156:127639680,	127637254	127637430	127637257	127637257	Nonsense_Mutation	C	T	p.R76X
READ	TCGA-F5-6814-01	ASNS	ENST00000422745.1	chr7	97493701:97493808:97498219:97498417:97501662:97501706,	97498220	97498417	97498282	97498282	Nonsense_Mutation	G	A	p.R63X
READ	TCGA-EI-6917-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072347	197072347	Nonsense_Mutation	C	A	p.E2012X
READ	TCGA-F5-6814-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108114679:108114845:108115514:108115753:108117690:108117854,	108115515	108115753	108115600	108115600	Nonsense_Mutation	C	T	p.R250X
READ	TCGA-EI-6917-01	AVEN	ENST00000306730.3,ENST00000558136.1	chr15	34159973:34160056:34163135:34163231:34168125:34168195,	34163136	34163231	34163195	34163195	Nonsense_Mutation	G	A	p.R185X
READ	TCGA-F5-6814-01	BAIAP2L1	ENST00000005260.8,ENST00000462558.1	chr7	97939756:97939904:97941408:97941576:97944771:97944924,	97941409	97941576	97941483	97941483	Nonsense_Mutation	C	A	p.E245X
READ	TCGA-EI-6882-01	BCL7A	ENST00000432926.2,ENST00000261822.4	chr12	122459883:122460089:122468605:122468687:122473236:122473333,	122468606	122468687	122468643	122468643	Nonsense_Mutation	C	T	p.R44X
READ	TCGA-F5-6814-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41245834	41245834	Nonsense_Mutation	C	A	p.E572X
READ	TCGA-DT-5265-01	BRIP1	ENST00000577598.1,ENST00000259008.2	chr17	59878613:59878835:59885827:59886118:59924461:59924581,	59885828	59886118	59886067	59886067	Nonsense_Mutation	G	A	p.Q227X
READ	TCGA-EI-6917-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40601237:40601362:40604102:40604210:40604298:40604424,	40604103	40604210	40604198	40604198	Nonsense_Mutation	G	A	p.R969X
READ	TCGA-F5-6814-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40601237:40601362:40604102:40604210:40604298:40604424,	40604103	40604210	40604198	40604198	Nonsense_Mutation	G	A	p.R969X
READ	TCGA-EI-6917-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000553975.1,ENST00000393170.2,ENST00000334746.5	chr14	93712170:93712632:93714821:93715000:93717808:93717998,	93714822	93715000	93714872	93714872	Nonsense_Mutation	G	A	p.R691X
READ	TCGA-EI-6917-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760501	93760501	Nonsense_Mutation	G	A	p.R289X
READ	TCGA-F5-6814-01	C12orf4	ENST00000535030.1	chr12	4643322:4643468:4645182:4645385:4647574:4647609,	4645183	4645385	4645321	4645321	Nonsense_Mutation	C	A	p.E14X
READ	TCGA-F5-6814-01	C12orf4	ENST00000545746.1	chr12	4643322:4643468:4645182:4645377:4647574:4647609,	4645183	4645377	4645321	4645321	Nonsense_Mutation	C	A	p.E14X
READ	TCGA-AF-5654-01	C16orf71	ENST00000299320.5,ENST00000590191.1	chr16	4796927:4797026:4797343:4797635:4798725:4799396,	4797344	4797635	4797375	4797375	Nonsense_Mutation	C	T	p.Q438X
READ	TCGA-F5-6814-01	C3orf33	ENST00000482061.2,ENST00000534941.1,ENST00000486435.1,ENST00000340171.2	chr3	155485306:155485458:155493489:155493637:155520320:155520380,	155493490	155493637	155493601	155493601	Nonsense_Mutation	C	A	p.E28X
READ	TCGA-F5-6814-01	CA13	ENST00000321764.3	chr8	86157755:86158094:86162968:86163166:86171649:86171768,	86162969	86163166	86163043	86163043	Nonsense_Mutation	G	T	p.E38X
READ	TCGA-F5-6814-01	CADM3	ENST00000416746.1,ENST00000368125.4,ENST00000368124.4	chr1	159162367:159162520:159163212:159163350:159163659:159163692,	159163213	159163350	159163341	159163341	Nonsense_Mutation	G	T	p.E205X
READ	TCGA-F5-6814-01	CALM1	ENST00000544280.2,ENST00000553542.1,ENST00000356978.4,ENST00000447653.3,ENST00000557020.1,ENST00000553964.1	chr14	90867676:90867746:90870205:90870312:90870722:90870840,	90870206	90870312	90870229	90870229	Nonsense_Mutation	G	T	p.E68X
READ	TCGA-F5-6571-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1,ENST00000389652.5	chr4	15558926:15559130:15560787:15560880:15562153:15562245,	15560788	15560880	15560806	15560806	Nonsense_Mutation	C	T	p.R950X
READ	TCGA-EI-6917-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114607005	114607005	Nonsense_Mutation	C	A	p.E413X
READ	TCGA-AG-3731-01	CCDC154	ENST00000389176.3,ENST00000409671.1	chr16	1486692:1486812:1487817:1487955:1488050:1488177,	1487818	1487955	1487952	1487952	Nonsense_Mutation	G	A	p.R386X
READ	TCGA-F5-6814-01	CCDC66	ENST00000436465.2,ENST00000476142.1,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000480884.1,ENST00000341455.6	chr3	56653298:56653555:56653804:56653929:56655559:56655790,	56653805	56653929	56653888	56653888	Nonsense_Mutation	C	T	p.R907X
READ	TCGA-EI-6917-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636030	32636030	Nonsense_Mutation	C	A	p.E612X
READ	TCGA-F5-6814-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652302	55652302	Nonsense_Mutation	C	A	p.E557X
READ	TCGA-AG-3592-01	CD22	ENST00000536635.2	chr19	35827153:35827244:35828657:35828924:35831783:35831853,	35828658	35828924	35828860	35828860	Nonsense_Mutation	C	A	p.Y307X
READ	TCGA-F5-6814-01	CD22	ENST00000270311.6,ENST00000419549.2,ENST00000085219.5,ENST00000544992.2,ENST00000601769.1	chr19	35828657:35828924:35829070:35829334:35831783:35831853,	35829071	35829334	35829199	35829199	Nonsense_Mutation	G	T	p.E372X
READ	TCGA-EI-6917-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078761	117078761	Nonsense_Mutation	G	A	p.R152X
READ	TCGA-F5-6814-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842326:68842470:68842595:68842751:68844099:68844165,	68842596	68842751	68842692	68842692	Nonsense_Mutation	G	T	p.E210X
READ	TCGA-F5-6814-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000577730.1	chr16	61747744:61747862:61760997:61761119:61823249:61823386,	61760998	61761119	61761051	61761051	Nonsense_Mutation	C	A	p.E495X
READ	TCGA-F5-6814-01	CDKL1	ENST00000395834.1	chr14	50796829:50796899:50798979:50799150:50801282:50801339,	50798980	50799150	50798991	50798991	Nonsense_Mutation	C	A	p.E320X
READ	TCGA-F5-6814-01	CDKL3	ENST00000523054.1	chr5	133685984:133686118:133695587:133695782:133706688:133706695,	133695588	133695782	133695617	133695617	Nonsense_Mutation	G	A	p.R111X
READ	TCGA-EI-6917-01	CEP104	ENST00000494653.1,ENST00000378230.3,ENST00000378223.3	chr1	3764038:3764177:3765171:3765345:3768858:3768985,	3765172	3765345	3765182	3765182	Nonsense_Mutation	G	A	p.R93X
READ	TCGA-EI-6917-01	CEP104	ENST00000494653.1,ENST00000378230.3,ENST00000378223.3	chr1	3764038:3764177:3765171:3765345:3768858:3768985,	3765172	3765345	3765296	3765296	Nonsense_Mutation	G	A	p.R55X
READ	TCGA-F5-6814-01	CEP164	ENST00000533223.1,ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117265838:117265907:117266262:117266438:117266769:117266896,	117266263	117266438	117266344	117266344	Nonsense_Mutation	G	T	p.E999X
READ	TCGA-F5-6814-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34082350:34082484:34084405:34084544:34085547:34085896,	34084406	34084544	34084470	34084470	Nonsense_Mutation	C	T	p.R1078X
READ	TCGA-F5-6814-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88465070:88465226:88465557:88465703:88470998:88471121,	88465558	88465703	88465643	88465643	Nonsense_Mutation	C	A	p.G1924X
READ	TCGA-F5-6814-01	CERS3	ENST00000284382.4,ENST00000558884.2,ENST00000538112.2	chr15	101031021:101031136:101041881:101042055:101061871:101061961,	101041882	101042055	101042036	101042036	Nonsense_Mutation	C	A	p.E7X
READ	TCGA-EI-6917-01	CHCHD3	ENST00000542753.1,ENST00000448878.1,ENST00000466644.1,ENST00000481152.1,ENST00000262570.5	chr7	132659928:132660046:132709305:132709387:132754901:132754989,	132709306	132709387	132709325	132709325	Nonsense_Mutation	C	A	p.E78X
READ	TCGA-EI-6917-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793207	42793207	Nonsense_Mutation	G	T	p.E367X
READ	TCGA-F5-6814-01	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39165929:39166073:39171365:39171627:39175945:39176084,	39171366	39171627	39171462	39171462	Nonsense_Mutation	G	A	p.R413X
READ	TCGA-F5-6814-01	CNTRL	ENST00000373855.1	chr9	123842583:123842756:123850573:123850821:123852552:123852683,	123850574	123850821	123850657	123850657	Nonsense_Mutation	C	A	p.S18X
READ	TCGA-EI-6917-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551579	165551579	Nonsense_Mutation	C	A	p.E813X
READ	TCGA-EI-6917-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551579	165551579	Nonsense_Mutation	C	A	p.E813X
READ	TCGA-F5-6814-01	COQ7	ENST00000569312.1	chr16	19083249:19083428:19085242:19085419:19087042:19087099,	19085243	19085419	19085285	19085285	Nonsense_Mutation	G	T	p.E61X
READ	TCGA-F5-6814-01	COQ7	ENST00000568985.1,ENST00000566110.1,ENST00000544894.2,ENST00000561858.1,ENST00000321998.5,ENST00000569127.1	chr16	19083249:19083428:19085242:19085357:19087042:19087099,	19085243	19085357	19085285	19085285	Nonsense_Mutation	G	T	p.E61X
READ	TCGA-F5-6814-01	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148925149:148925404:148926997:148927171:148927953:148928166,	148926998	148927171	148927133	148927133	Nonsense_Mutation	C	A	p.E216X
READ	TCGA-EI-6507-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3799627:3799684:3801726:3801807:3807288:3807377,	3801727	3801807	3801731	3801731	Nonsense_Mutation	G	A	p.Q1259X
READ	TCGA-EI-6917-01	CRISPLD1	ENST00000517786.1,ENST00000523524.1	chr8	75898160:75898480:75924667:75924786:75925124:75925257,75912408:75912644:75924667:75924786:75925124:75925257,	75924668	75924786	75924718	75924718	Nonsense_Mutation	C	A	p.C103X
READ	TCGA-F5-6814-01	CRYZ	ENST00000370871.3,ENST00000441120.1,ENST00000417775.1,ENST00000340866.5,ENST00000370870.1	chr1	75180262:75180314:75184892:75185056:75188801:75188942,	75184893	75185056	75184909	75184909	Nonsense_Mutation	G	A	p.R138X
READ	TCGA-F5-6814-01	CSRP1	ENST00000526317.1	chr1	201453852:201453917:201454410:201454504:201465319:201465389,	201454411	201454504	201454483	201454483	Nonsense_Mutation	G	A	p.R145X
READ	TCGA-F5-6814-01	CSRP3	ENST00000533783.1	chr11	19209682:19209851:19213883:19214023:19223500:19223589,	19213884	19214023	19213932	19213932	Nonsense_Mutation	C	A	p.E22X
READ	TCGA-EI-6917-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577603	57577603	Nonsense_Mutation	C	T	p.R814X
READ	TCGA-F5-6814-01	CUL2	ENST00000374742.1,ENST00000374746.1,ENST00000374754.4,ENST00000374748.1,ENST00000374749.3,ENST00000602371.1,ENST00000374751.3,ENST00000537177.1	chr10	35324099:35324224:35327847:35328010:35333493:35333604,	35327848	35328010	35327980	35327980	Nonsense_Mutation	G	A	p.R249X
READ	TCGA-EI-6917-01	CUL4B	ENST00000336592.6,ENST00000404115.3,ENST00000371323.2,ENST00000371322.5	chrX	119677968:119678058:119678335:119678498:119679298:119679372,	119678336	119678498	119678368	119678368	Nonsense_Mutation	G	A	p.R351X
READ	TCGA-AF-4110-01	DCLK1	ENST00000360631.3,ENST00000255448.4,ENST00000379893.1	chr13	36382360:36382457:36383154:36383232:36384971:36385105,	36383155	36383232	36383222	36383222	Nonsense_Mutation	T	A	p.K260X
READ	TCGA-F5-6814-01	DDX1	ENST00000381341.2,ENST00000233084.3	chr2	15739792:15739840:15742671:15742755:15743315:15743399,	15742672	15742755	15742743	15742743	Nonsense_Mutation	G	T	p.G127X
READ	TCGA-EI-6917-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4	chr5	134109474:134109551:134113263:134113415:134116822:134116936,	134113264	134113415	134113410	134113410	Nonsense_Mutation	G	T	p.E254X
READ	TCGA-EI-6917-01	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169354160:169354266:169362487:169362643:169369788:169369930,	169362488	169362643	169362566	169362566	Nonsense_Mutation	C	A	p.E406X
READ	TCGA-F5-6814-01	DENND1B	ENST00000235453.4,ENST00000294737.7,ENST00000400967.2,ENST00000367396.3,ENST00000496935.1	chr1	197576202:197576304:197581060:197581106:197586788:197586889,	197581061	197581106	197581063	197581063	Nonsense_Mutation	C	A	p.E273X
READ	TCGA-EI-6917-01	DERL2	ENST00000571971.1,ENST00000570848.1,ENST00000575605.1	chr17	5383706:5383902:5384615:5384709:5386128:5386199,5384420:5384462:5384615:5384709:5386128:5386199,	5384616	5384709	5384696	5384696	Nonsense_Mutation	G	A	p.R83X
READ	TCGA-F5-6814-01	DHX32	ENST00000284688.6,ENST00000368721.1,ENST00000284690.3	chr10	127526774:127526956:127527569:127527757:127529415:127529565,	127527570	127527757	127527689	127527689	Nonsense_Mutation	G	A	p.R588X
READ	TCGA-F5-6814-01	DIS3	ENST00000377767.4,ENST00000545453.1,ENST00000490646.1,ENST00000377780.4	chr13	73350062:73350230:73351557:73351631:73352324:73352518,	73351558	73351631	73351626	73351626	Nonsense_Mutation	C	A	p.E166X
READ	TCGA-F5-6814-01	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000338354.3	chr10	124350994:124351033:124351787:124352111:124353084:124353114,	124351788	124352111	124352047	124352047	Nonsense_Mutation	C	A	p.C812X
READ	TCGA-F5-6814-01	DMD	ENST00000493412.1,ENST00000357033.4,ENST00000378677.2	chrX	32361250:32361403:32364059:32364197:32366522:32366627,	32364060	32364197	32364116	32364116	Nonsense_Mutation	G	A	p.R503X
READ	TCGA-EI-6917-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000413276.2,ENST00000412139.2,ENST00000579850.1,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2,ENST00000425406.1,ENST00000488352.2	chr7	86823077:86823418:86823999:86824144:86824346:86824482,	86824000	86824144	86824024	86824024	Nonsense_Mutation	G	T	p.E685X
READ	TCGA-F5-6814-01	DNAH5	ENST00000265104.4	chr5	13766084:13766288:13769068:13769245:13769609:13769724,	13769069	13769245	13769236	13769236	Nonsense_Mutation	C	A	p.E3244X
READ	TCGA-F5-6814-01	DNMT3B	ENST00000375623.4	chr20	31376659:31376818:31379406:31379514:31383214:31383340,	31379407	31379514	31379488	31379488	Nonsense_Mutation	C	T	p.R299X
READ	TCGA-F5-6814-01	DPF1	ENST00000438060.1,ENST00000355526.4,ENST00000473716.1,ENST00000414789.1,ENST00000416611.1,ENST00000412732.1,ENST00000418517.1,ENST00000471976.1,ENST00000456296.1	chr19	38706881:38706899:38706992:38707043:38708437:38708516,38706881:38706899:38706992:38707043:38708099:38708231,	38706993	38707043	38707032	38707032	Nonsense_Mutation	C	A	p.E192X
READ	TCGA-EI-6882-01	DPH5	ENST00000342173.7	chr1	101455948:101456187:101458192:101458296:101460665:101460696,101455779:101456184:101458192:101458296:101460665:101460705,	101458193	101458296	101458208	101458208	Nonsense_Mutation	G	A	p.R207X
READ	TCGA-EI-6917-01	DPY19L3	ENST00000592142.1	chr19	32955633:32955690:32958379:32959719:32968427:32968560,	32958380	32959719	32959676	32959676	Nonsense_Mutation	G	T	p.E552X
READ	TCGA-EI-6917-01	DPY19L3	ENST00000342179.5,ENST00000586987.1,ENST00000392250.2	chr19	32955633:32955690:32959636:32959719:32968427:32968560,	32959637	32959719	32959676	32959676	Nonsense_Mutation	G	T	p.E552X
READ	TCGA-F5-6814-01	DPY19L4	ENST00000414645.2	chr8	95773929:95774062:95777410:95777542:95777938:95778037,	95777411	95777542	95777508	95777508	Nonsense_Mutation	T	G	p.L323X
READ	TCGA-EI-6917-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150208	27150208	Nonsense_Mutation	C	T	p.R170X
READ	TCGA-EI-6917-01	DUSP12	ENST00000367943.4	chr1	161719569:161719935:161721457:161721571:161721655:161721774,	161721458	161721571	161721474	161721474	Nonsense_Mutation	C	T	p.R121X
READ	TCGA-EI-6917-01	DUSP12	ENST00000464004.2	chr1	161719569:161719935:161721444:161721571:161721655:161721774,	161721445	161721571	161721474	161721474	Nonsense_Mutation	C	T	p.R121X
READ	TCGA-DY-A1DG-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71797728:71797871:71801327:71801501:71816722:71816816,	71801328	71801501	71801460	71801460	Nonsense_Mutation	A	T	p.K1135X
READ	TCGA-F5-6814-01	EIF5B	ENST00000289371.6	chr2	99976698:99976824:99976927:99977012:99977610:99978283,	99976928	99977012	99976947	99976947	Nonsense_Mutation	G	T	p.E61X
READ	TCGA-F5-6814-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000350494.6,ENST00000542824.1,ENST00000545302.1,ENST00000541748.1,ENST00000351393.6,ENST00000358232.6,ENST00000540766.1,ENST00000442325.2	chr18	33747118:33747185:33750025:33750159:33751009:33751123,	33750026	33750159	33750158	33750158	Nonsense_Mutation	C	T	p.R667X
READ	TCGA-DY-A1DF-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000400111.3,ENST00000545076.1,ENST00000427684.2,ENST00000542652.2	chr18	5393178:5393477:5395065:5395146:5395607:5395706,5394681:5394792:5395065:5395146:5395607:5395706,	5395066	5395146	5395107	5395107	Nonsense_Mutation	G	A	p.R1038X
READ	TCGA-F5-6814-01	EPB41L4A	ENST00000261486.5	chr5	111545588:111545679:111570330:111570452:111575356:111575434,	111570331	111570452	111570355	111570355	Nonsense_Mutation	G	A	p.R355X
READ	TCGA-EI-6507-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222347159:222347410:222365736:222365892:222428450:222429114,	222365737	222365892	222365809	222365809	Nonsense_Mutation	C	A	p.G303X
READ	TCGA-AG-3732-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19140819:19140951:19144163:19144278:19146106:19146167,	19144164	19144278	19144171	19144171	Nonsense_Mutation	A	T	p.L605X
READ	TCGA-F5-6814-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154732	19154732	Nonsense_Mutation	C	A	p.E25X
READ	TCGA-F5-6814-01	ESR2	ENST00000344288.6	chr14	64701780:64701868:64716263:64716397:64723943:64724082,64701780:64701868:64716263:64716397:64727166:64727245,	64716264	64716397	64716303	64716303	Nonsense_Mutation	C	A	p.E396X
READ	TCGA-EI-6882-01	ESYT2	ENST00000251527.5,ENST00000435514.2,ENST00000275418.7	chr7	158531713:158531812:158534213:158534587:158536219:158536369,	158534214	158534587	158534236	158534236	Nonsense_Mutation	G	A	p.Q743X
READ	TCGA-DC-6682-01	FAM129C	ENST00000352727.3,ENST00000595684.1,ENST00000300971.2,ENST00000600519.1,ENST00000601861.1,ENST00000335393.4,ENST00000599164.1,ENST00000332386.5,ENST00000599124.1	chr19	17638112:17638204:17641563:17641694:17643071:17643197,	17641564	17641694	17641677	17641677	Nonsense_Mutation	C	T	p.Q88X
READ	TCGA-EI-6917-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5791130	5791130	Nonsense_Mutation	C	T	p.R1916X
READ	TCGA-EI-6917-01	FAM98B	ENST00000491535.1	chr15	38746354:38746433:38756232:38756378:38757469:38757604,	38756233	38756378	38756343	38756343	Nonsense_Mutation	C	A	p.S61X
READ	TCGA-EI-6917-01	FANCC	ENST00000289081.3,ENST00000375305.1	chr9	97861336:97864132:97869347:97869551:97873744:97873919,	97869348	97869551	97869390	97869390	Nonsense_Mutation	C	T	p.W497X
READ	TCGA-EI-6917-01	FANCI	ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89807752:89807838:89811629:89811756:89816607:89816700,	89811630	89811756	89811736	89811736	Nonsense_Mutation	G	T	p.E288X
READ	TCGA-F5-6814-01	FANCM	ENST00000267430.5,ENST00000556036.1,ENST00000542564.2	chr14	45624575:45624662:45628298:45628483:45633561:45633768,	45628299	45628483	45628373	45628373	Nonsense_Mutation	G	T	p.E491X
READ	TCGA-F5-6814-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542729	187542729	Nonsense_Mutation	C	A	p.E1671X
READ	TCGA-F5-6814-01	FBXO15	ENST00000269500.5,ENST00000581214.1,ENST00000583443.1,ENST00000419743.2	chr18	71793209:71793336:71796639:71796849:71797650:71797893,	71796640	71796849	71796815	71796815	Nonsense_Mutation	C	A	p.E128X
READ	TCGA-AF-5654-01	FBXW7	ENST00000603841.1,ENST00000603548.1,ENST00000281708.4	chr4	153268081:153268223:153271193:153271276:153332454:153333024,	153271194	153271276	153271206	153271206	Nonsense_Mutation	G	C	p.S111X
READ	TCGA-F5-6814-01	FOCAD	ENST00000338382.6,ENST00000380249.1	chr9	20764872:20765072:20770030:20770237:20778679:20778767,	20770031	20770237	20770223	20770223	Nonsense_Mutation	G	T	p.E298X
READ	TCGA-F5-6814-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15977928	15977928	Nonsense_Mutation	C	A	p.E55X
READ	TCGA-F5-6814-01	FOPNL	ENST00000575938.1	chr16	15973660:15973745:15977864:15977981:15982414:15982450,	15977865	15977981	15977928	15977928	Nonsense_Mutation	C	A	p.E55X
READ	TCGA-F5-6814-01	FSD2	ENST00000334574.8	chr15	83437631:83437782:83438501:83438636:83440824:83440980,	83438502	83438636	83438616	83438616	Nonsense_Mutation	C	A	p.E430X
READ	TCGA-F5-6814-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671130	186671130	Nonsense_Mutation	T	G	p.Y5788X
READ	TCGA-G5-6233-01	FXR1	ENST00000357559.4,ENST00000480918.1,ENST00000475315.1,ENST00000305586.7	chr3	180688862:180688943:180693100:180693192:180693909:180694070,180688054:180688146:180693100:180693192:180693909:180694070,	180693101	180693192	180693163	180693163	Nonsense_Mutation	G	T	p.E471X
READ	TCGA-F5-6814-01	GALNT7	ENST00000265000.4,ENST00000505308.1,ENST00000503213.1	chr4	174225169:174225269:174235108:174235327:174238784:174238883,	174235109	174235327	174235223	174235223	Nonsense_Mutation	C	T	p.R502X
READ	TCGA-EI-6882-01	GAPDHS	ENST00000586334.1,ENST00000585510.1,ENST00000222286.4	chr19	36029208:36029305:36029478:36029585:36033220:36033311,	36029479	36029585	36029512	36029512	Nonsense_Mutation	C	T	p.R126X
READ	TCGA-DY-A1DD-01	GAS2L3	ENST00000547754.1,ENST00000539410.1,ENST00000266754.5,ENST00000537247.1	chr12	101011521:101011585:101012226:101012365:101016052:101016160,	101012227	101012365	101012348	101012348	Nonsense_Mutation	G	T	p.E211X
READ	TCGA-F5-6814-01	GDF15	ENST00000595973.2	chr19	18493159:18493257:18496726:18497276:18499095:18499157,	18496727	18497276	18497064	18497064	Nonsense_Mutation	C	A	p.S22X
READ	TCGA-F5-6814-01	GMCL1	ENST00000282570.3,ENST00000471404.1	chr2	70070280:70070393:70071262:70071328:70074674:70074759,	70071263	70071328	70071270	70071270	Nonsense_Mutation	G	T	p.E234X
READ	TCGA-F5-6814-01	GMPR	ENST00000259727.4	chr6	16254792:16254966:16274645:16274727:16279014:16279121,	16274646	16274727	16274676	16274676	Nonsense_Mutation	G	T	p.E166X
READ	TCGA-F5-6814-01	GMPS	ENST00000496455.2,ENST00000295920.7	chr3	155649553:155649669:155652704:155652835:155654126:155654299,	155652705	155652835	155652736	155652736	Nonsense_Mutation	G	T	p.E570X
READ	TCGA-F5-6814-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365337	37365337	Nonsense_Mutation	G	T	p.E676X
READ	TCGA-F5-6814-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368058	37368058	Nonsense_Mutation	G	T	p.E1583X
READ	TCGA-DC-6158-01	GPR157	ENST00000377411.4	chr1	9164590:9164693:9165544:9165739:9171334:9171429,	9165545	9165739	9165617	9165617	Nonsense_Mutation	C	T	p.W240X
READ	TCGA-F5-6814-01	GSK3B	ENST00000316626.5	chr3	119666114:119666198:119720892:119721086:119812193:119812513,	119720893	119721086	119720937	119720937	Nonsense_Mutation	C	A	p.E80X
READ	TCGA-F5-6814-01	GSTZ1	ENST00000556627.1,ENST00000553838.1,ENST00000349555.3,ENST00000553268.1,ENST00000553431.1,ENST00000554279.1	chr14	77790911:77790965:77791212:77791264:77793180:77793248,77788889:77789075:77791212:77791264:77793180:77793248,77787436:77787526:77791212:77791264:77793180:77793248,	77791213	77791264	77791258	77791258	Nonsense_Mutation	C	T	p.R21X
READ	TCGA-F5-6814-01	GTPBP8	ENST00000473129.1,ENST00000467752.1,ENST00000383678.2	chr3	112709855:112710182:112713981:112714112:112715738:112715838,112711885:112711971:112713981:112714112:112715738:112715838,	112713982	112714112	112714105	112714105	Nonsense_Mutation	C	T	p.R187X
READ	TCGA-F5-6814-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19076599:19076702:19078173:19078300:19080476:19080670,	19078174	19078300	19078221	19078221	Nonsense_Mutation	C	A	p.E382X
READ	TCGA-F5-6814-01	HDAC2	ENST00000519065.1,ENST00000523334.1,ENST00000519108.1,ENST00000368632.2,ENST00000398283.2	chr6	114270331:114270424:114274440:114274582:114277176:114277315,	114274441	114274582	114274487	114274487	Nonsense_Mutation	G	T	p.S198X
READ	TCGA-EI-6882-01	HDLBP	ENST00000422933.1,ENST00000430918.1,ENST00000422080.1,ENST00000423693.1,ENST00000442714.1,ENST00000441124.1,ENST00000391975.1,ENST00000458564.1,ENST00000391976.2,ENST00000428482.1,ENST00000444092.1,ENST00000452065.1,ENST00000425989.1,ENST00000310931.4	chr2	242203956:242204020:242206208:242206321:242207891:242207956,	242206209	242206321	242206239	242206239	Nonsense_Mutation	G	A	p.R52X
READ	TCGA-F5-6814-01	HEATR3	ENST00000299192.7,ENST00000285767.4	chr16	50104088:50104201:50106515:50106625:50109481:50109622,	50106516	50106625	50106517	50106517	Nonsense_Mutation	G	T	p.E172X
READ	TCGA-F5-6814-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197090495:197090594:197092825:197092978:197105172:197105286,	197092826	197092978	197092929	197092929	Nonsense_Mutation	C	A	p.E1272X
READ	TCGA-EI-6917-01	HIF1A	ENST00000394997.1	chr14	62162494:62162557:62187096:62187290:62188226:62188372,	62187097	62187290	62187122	62187122	Nonsense_Mutation	G	T	p.E20X
READ	TCGA-EI-6917-01	HIF1A	ENST00000337138.4,ENST00000323441.6	chr14	62162494:62162557:62187099:62187290:62188226:62188372,	62187100	62187290	62187122	62187122	Nonsense_Mutation	G	T	p.E20X
READ	TCGA-F5-6814-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125642	12125642	Nonsense_Mutation	C	T	p.R1872X
READ	TCGA-AF-6136-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911240	29911240	Nonsense_Mutation	T	A	p.L180X
READ	TCGA-F5-6465-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911240	29911240	Nonsense_Mutation	T	A	p.L180X
READ	TCGA-F5-6813-01	HLA-DPA1	ENST00000453337.1,ENST00000419277.1,ENST00000428995.1	chr6	33036938:33037077:33037417:33037663:33041247:33041378,	33037418	33037663	33037508	33037508	Nonsense_Mutation	C	A	p.E86X
READ	TCGA-F5-6814-01	HMGCR	ENST00000511206.1,ENST00000343975.5,ENST00000287936.4	chr5	74639677:74639789:74640069:74640157:74641398:74641483,	74640070	74640157	74640141	74640141	Nonsense_Mutation	G	T	p.E117X
READ	TCGA-F5-6814-01	HR	ENST00000312841.8	chr8	21984998:21985342:21986071:21986723:21987940:21988194,	21986072	21986723	21986227	21986227	Nonsense_Mutation	C	A	p.E153X
READ	TCGA-EI-6917-01	HSCB	ENST00000216027.3,ENST00000483861.1,ENST00000450178.1	chr22	29140602:29140697:29141851:29141996:29147228:29147276,29140602:29140692:29141851:29141996:29147228:29147276,	29141852	29141996	29141918	29141918	Nonsense_Mutation	G	T	p.E164X
READ	TCGA-F5-6814-01	IFI44	ENST00000472152.1	chr1	79121046:79121196:79124996:79125168:79129449:79129582,	79124997	79125168	79125147	79125147	Nonsense_Mutation	C	T	p.R331X
READ	TCGA-EI-6507-01	IFT57	ENST00000264538.3	chr3	107882509:107882576:107884277:107884340:107885700:107885832,	107884278	107884340	107884331	107884331	Nonsense_Mutation	G	A	p.R331X
READ	TCGA-F5-6814-01	IQCK	ENST00000320394.6,ENST00000561839.1,ENST00000568300.2,ENST00000308214.9,ENST00000564955.1,ENST00000433597.2,ENST00000562762.1	chr16	19775356:19775434:19838347:19838459:19867808:19867883,19800159:19800244:19838347:19838459:19867808:19867883,	19838348	19838459	19838372	19838372	Nonsense_Mutation	G	T	p.E239X
READ	TCGA-F5-6814-01	IRF2	ENST00000393593.3,ENST00000510814.1,ENST00000507523.1,ENST00000505067.1	chr4	185329358:185329429:185339320:185339367:185339685:185339744,	185339321	185339367	185339344	185339344	Nonsense_Mutation	C	A	p.E130X
READ	TCGA-EI-6917-01	ITFG1	ENST00000544001.2,ENST00000569551.2,ENST00000320640.6	chr16	47409786:47409851:47462714:47462809:47485306:47485381,	47462715	47462809	47462766	47462766	Nonsense_Mutation	G	A	p.R202X
READ	TCGA-DY-A0XA-01	ITGA3	ENST00000320031.8,ENST00000007722.7,ENST00000507771.1,ENST00000506827.1,ENST00000505306.1	chr17	48154763:48154811:48155409:48155489:48155570:48155648,	48155410	48155489	48155479	48155479	Nonsense_Mutation	C	T	p.Q737X
READ	TCGA-EI-6917-01	ITGA7	ENST00000394230.2,ENST00000257880.7,ENST00000553804.1,ENST00000555728.1,ENST00000347027.6,ENST00000257879.6,ENST00000394229.2,ENST00000452168.2	chr12	56091721:56091810:56092166:56092360:56092493:56092677,	56092167	56092360	56092314	56092314	Nonsense_Mutation	C	A	p.E256X
READ	TCGA-AG-3725-01	ITGAV	ENST00000374907.3	chr2	187490199:187490314:187500808:187500934:187501791:187501836,	187500809	187500934	187500811	187500811	Nonsense_Mutation	C	T	p.Q166X
READ	TCGA-F5-6814-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000320216.6,ENST00000523323.1,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5	chr21	46321421:46321648:46323279:46323450:46326829:46327010,	46323280	46323450	46323368	46323368	Nonsense_Mutation	G	T	p.Y137X
READ	TCGA-F5-6814-01	JAKMIP1	ENST00000409021.3,ENST00000473053.1,ENST00000457227.2,ENST00000410077.2,ENST00000282924.5,ENST00000409831.1	chr4	6066606:6066735:6081898:6082039:6083335:6083482,6080665:6080725:6081898:6082039:6083335:6083482,	6081899	6082039	6082036	6082036	Nonsense_Mutation	C	A	p.E369X
READ	TCGA-F5-6814-01	JTB	ENST00000271843.4,ENST00000356648.1,ENST00000428469.1,ENST00000368589.1	chr1	153947157:153947311:153948301:153948381:153949168:153949247,	153948302	153948381	153948312	153948312	Nonsense_Mutation	C	A	p.E92X
READ	TCGA-EI-6917-01	KATNA1	ENST00000367411.2,ENST00000444282.1,ENST00000335647.5,ENST00000420200.1	chr6	149925796:149925918:149944238:149944419:149953894:149954052,	149944239	149944419	149944366	149944366	Nonsense_Mutation	G	T	p.S125X
READ	TCGA-EI-6917-01	KCNH5	ENST00000322893.7,ENST00000394968.1	chr14	63246445:63246642:63269046:63269299:63316370:63316570,	63269047	63269299	63269215	63269215	Nonsense_Mutation	G	A	p.R494X
READ	TCGA-F5-6814-01	KDELC2	ENST00000375648.1,ENST00000323468.5,ENST00000434945.2,ENST00000530529.1	chr11	108350027:108350222:108351906:108352103:108352732:108352785,	108351907	108352103	108351957	108351957	Nonsense_Mutation	C	A	p.E350X
READ	TCGA-EI-6917-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373756	36373756	Nonsense_Mutation	G	A	p.R339X
READ	TCGA-F5-6814-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603753	138603753	Nonsense_Mutation	C	A	p.E207X
READ	TCGA-AH-6644-01	KLHDC2	ENST00000555739.1,ENST00000554589.1,ENST00000557247.1,ENST00000298307.5,ENST00000555443.1,ENST00000553538.1	chr14	50238311:50238391:50241278:50241396:50244556:50244672,	50241279	50241396	50241377	50241377	Nonsense_Mutation	C	G	p.S111X
READ	TCGA-F5-6814-01	KLHL24	ENST00000242810.6,ENST00000454652.2	chr3	183361267:183361330:183368083:183369064:183381245:183381430,	183368084	183369064	183368751	183368751	Nonsense_Mutation	G	T	p.E203X
READ	TCGA-F5-6814-01	KPNB1	ENST00000290158.4,ENST00000582097.1,ENST00000583013.1,ENST00000535458.2,ENST00000540627.1,ENST00000537679.1	chr17	45745730:45745776:45747043:45747235:45748067:45748198,	45747044	45747235	45747092	45747092	Nonsense_Mutation	C	T	p.R425X
READ	TCGA-F5-6814-01	KRIT1	ENST00000394503.2	chr7	91863762:91863906:91864121:91864237:91864716:91864960,91863762:91863906:91864121:91864237:91864847:91864929,91855839:91855996:91864121:91864237:91864716:91864960,	91864122	91864237	91864211	91864211	Nonsense_Mutation	G	T	p.Y252X
READ	TCGA-F5-6814-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56078962	56078962	Nonsense_Mutation	G	T	p.E66X
READ	TCGA-EI-6917-01	LAP3	ENST00000606142.1,ENST00000226299.4	chr4	17583382:17583437:17583910:17584016:17585105:17585265,	17583911	17584016	17583992	17583992	Nonsense_Mutation	G	T	p.E119X
READ	TCGA-EI-6917-01	LATS1	ENST00000392273.3	chr6	150016209:150016357:150022914:150023402:150038984:150039170,	150022915	150023402	150023019	150023019	Nonsense_Mutation	G	A	p.R82X
READ	TCGA-EI-6917-01	LIPC	ENST00000414170.3,ENST00000356113.6,ENST00000299022.5	chr15	58724189:58724319:58830531:58830716:58833983:58834166,	58830532	58830716	58830636	58830636	Nonsense_Mutation	C	T	p.R65X
READ	TCGA-EI-6507-01	LMAN1L	ENST00000379709.3,ENST00000309664.5	chr15	75115899:75116023:75116691:75116819:75117816:75118095,	75116692	75116819	75116785	75116785	Nonsense_Mutation	C	T	p.Q473X
READ	TCGA-EI-6507-01	LMAN1L	ENST00000565585.1	chr15	75114982:75115050:75115899:75116819:75117813:75118095,	75115900	75116819	75116785	75116785	Nonsense_Mutation	C	T	p.Q473X
READ	TCGA-EI-6917-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37107714:37107816:37116514:37116607,37107300:37107433:37107714:37107816:37114280:37114373,	37107715	37107816	37107798	37107798	Nonsense_Mutation	C	A	p.E495X
READ	TCGA-F5-6814-01	LRRFIP2	ENST00000354379.4,ENST00000416425.1,ENST00000421276.2,ENST00000440230.1	chr3	37138106:37138151:37170553:37170640:37190384:37190529,	37170554	37170640	37170556	37170556	Nonsense_Mutation	C	A	p.E59X
READ	TCGA-F5-6814-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450447	85450447	Nonsense_Mutation	G	T	p.E626X
READ	TCGA-F5-6814-01	LRTM1	ENST00000493075.1	chr3	54952359:54952919:54958645:54959242:55000954:55001115,	54958646	54959242	54958763	54958763	Nonsense_Mutation	G	A	p.R163X
READ	TCGA-F5-6814-01	LYST	ENST00000389794.3,ENST00000389793.2	chr1	235904721:235904928:235907278:235907457:235909635:235909827,	235907279	235907457	235907320	235907320	Nonsense_Mutation	C	A	p.E2704X
READ	TCGA-F5-6814-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944209	235944209	Nonsense_Mutation	C	A	p.E1724X
READ	TCGA-F5-6814-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199662	20199662	Nonsense_Mutation	C	A	p.E108X
READ	TCGA-EI-6917-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000311027.5,ENST00000395344.3,ENST00000402192.2	chr11	47346021:47346128:47348288:47348358:47350208:47350255,	47348289	47348358	47348331	47348331	Nonsense_Mutation	C	T	p.R1589X
READ	TCGA-F5-6814-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000311027.5,ENST00000395344.3,ENST00000402192.2	chr11	47346021:47346128:47348288:47348358:47350208:47350255,	47348289	47348358	47348331	47348331	Nonsense_Mutation	C	T	p.R1589X
READ	TCGA-AF-6136-01	MAOB	ENST00000536181.1,ENST00000538942.1,ENST00000378069.4,ENST00000487544.1	chrX	43661418:43661510:43662546:43662651:43698113:43698251,	43662547	43662651	43662574	43662574	Nonsense_Mutation	C	T	p.W119X
READ	TCGA-F5-6814-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559248	210559248	Nonsense_Mutation	C	A	p.S785X
READ	TCGA-F5-6814-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559248	210559248	Nonsense_Mutation	C	A	p.S785X
READ	TCGA-F5-6814-01	MAP2	ENST00000475600.1	chr2	210561037:210561074:210561265:210561472:210565000:210565062,	210561266	210561472	210561313	210561313	Nonsense_Mutation	G	T	p.E1410X
READ	TCGA-AG-3592-01	MAP4K1	ENST00000589130.1,ENST00000586296.1,ENST00000396857.2,ENST00000591517.1	chr19	39100548:39100665:39101690:39101772:39101882:39101945,	39101691	39101772	39101717	39101717	Nonsense_Mutation	G	A	p.R262X
READ	TCGA-F5-6814-01	MARCH7	ENST00000259050.4,ENST00000539065.1	chr2	160572191:160572277:160585519:160585686:160599571:160599722,160569033:160569172:160585519:160585686:160599571:160599722,160569009:160569117:160585519:160585686:160599571:160599722,	160585520	160585686	160585661	160585661	Nonsense_Mutation	C	A	p.S43X
READ	TCGA-EI-6917-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715720	68715720	Nonsense_Mutation	C	T	p.R170X
READ	TCGA-F5-6814-01	MBD2	ENST00000256429.3	chr18	51691058:51691070:51692445:51692536:51714083:51714207,51691058:51691070:51692445:51692536:51715243:51715381,	51692446	51692536	51692488	51692488	Nonsense_Mutation	C	A	p.E297X
READ	TCGA-F5-6814-01	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505208.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8,ENST00000506568.4,ENST00000512425.1	chr5	94204037:94204157:94206121:94206196:94206576:94206678,	94206122	94206196	94206163	94206163	Nonsense_Mutation	C	A	p.E538X
READ	TCGA-F5-6814-01	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505208.1,ENST00000429576.2,ENST00000312216.8,ENST00000510732.1,ENST00000513695.1,ENST00000503301.1,ENST00000514780.1,ENST00000507214.1	chr5	94278097:94278131:94288922:94289065:94353070:94353188,	94288923	94289065	94289024	94289024	Nonsense_Mutation	C	A	p.E73X
READ	TCGA-F5-6814-01	MET	ENST00000539704.1,ENST00000397752.3,ENST00000318493.6	chr7	116417442:116417523:116418829:116419011:116422041:116422151,	116418830	116419011	116418997	116418997	Nonsense_Mutation	C	T	p.R1170X
READ	TCGA-DY-A0XA-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60501579:60501671:60503659:60504015:60505148:60505198,	60503660	60504015	60503802	60503802	Nonsense_Mutation	G	A	p.W115X
READ	TCGA-EI-6917-01	MFSD2A	ENST00000483824.1	chr1	40420829:40421057:40422758:40422893:40424372:40424497,	40422759	40422893	40422762	40422762	Nonsense_Mutation	G	T	p.E33X
READ	TCGA-EI-6917-01	MGA	ENST00000563576.1,ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000566718.1,ENST00000570161.1,ENST00000389936.4	chr15	41999925:42000057:42000301:42000406:42002888:42003547,	42000302	42000406	42000403	42000403	Nonsense_Mutation	G	T	p.E808X
READ	TCGA-F5-6814-01	MOV10L1	ENST00000262794.5,ENST00000545383.1,ENST00000395852.1	chr22	50598106:50598214:50599116:50599254:50599796:50600047,50598106:50598214:50599116:50599254:50599392:50599484,	50599117	50599254	50599252	50599252	Nonsense_Mutation	C	T	p.R1134X
READ	TCGA-G5-6233-01	MPZ	ENST00000491222.2,ENST00000336559.4,ENST00000533357.1,ENST00000360451.6,ENST00000463290.1	chr1	161276118:161276254:161276497:161276711:161277047:161277214,	161276498	161276711	161276511	161276511	Nonsense_Mutation	A	T	p.Y145X
READ	TCGA-F5-6814-01	MRPL13	ENST00000306185.3,ENST00000518696.1	chr8	121408197:121408364:121426229:121426351:121432091:121432178,	121426230	121426351	121426300	121426300	Nonsense_Mutation	G	A	p.R149X
READ	TCGA-F5-6814-01	MYLK3	ENST00000394809.4	chr16	46766119:46766580:46771622:46772055:46773968:46774059,	46771623	46772055	46771765	46771765	Nonsense_Mutation	C	A	p.G287X
READ	TCGA-F5-6814-01	MYO1E	ENST00000288235.4	chr15	59506838:59506919:59510089:59510286:59515257:59515390,	59510090	59510286	59510236	59510236	Nonsense_Mutation	C	A	p.E321X
READ	TCGA-EI-6881-01	MYO3A	ENST00000265944.5	chr10	26385496:26385611:26409604:26409731:26414326:26414537,	26409605	26409731	26409725	26409725	Nonsense_Mutation	G	T	p.E633X
READ	TCGA-F5-6814-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2	chr2	171323015:171323221:171355101:171355213:171356155:171356318,	171355102	171355213	171355111	171355111	Nonsense_Mutation	C	A	p.Y1008X
READ	TCGA-F5-6814-01	MYO5B	ENST00000285039.7	chr18	47438431:47438543:47455881:47455968:47462621:47462719,	47455882	47455968	47455910	47455910	Nonsense_Mutation	G	A	p.R688X
READ	TCGA-F5-6863-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291436	140291436	Nonsense_Mutation	G	T	p.E609X
READ	TCGA-EI-6917-01	NAF1	ENST00000274054.2	chr4	164050330:164050500:164054305:164054408:164058350:164058402,	164054306	164054408	164054387	164054387	Nonsense_Mutation	C	A	p.E318X
READ	TCGA-CL-5918-01	NBEA	ENST00000379922.3,ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3,ENST00000537702.1	chr13	36220395:36220485:36223791:36223984:36225941:36226013,	36223792	36223984	36223948	36223948	Nonsense_Mutation	C	T	p.R2622X
READ	TCGA-DY-A1H8-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90955586:90955594:90958367:90958523:90960051:90960120,	90958368	90958523	90958456	90958456	Nonsense_Mutation	G	T	p.S661X
READ	TCGA-DT-5265-01	NCBP1	ENST00000375147.3	chr9	100412784:100412882:100413591:100413655:100416079:100416190,	100413592	100413655	100413599	100413599	Nonsense_Mutation	C	T	p.Q335X
READ	TCGA-EI-6881-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3	chr20	46275816:46276110:46277748:46277841:46279725:46280020,	46277749	46277841	46277839	46277839	Nonsense_Mutation	C	T	p.Q1213X
READ	TCGA-EI-6881-01	NCOA3	ENST00000371998.3	chr20	46275816:46276110:46277748:46277853:46279725:46280020,	46277749	46277853	46277839	46277839	Nonsense_Mutation	C	T	p.Q1213X
READ	TCGA-F5-6814-01	NCOR1	ENST00000268712.3	chr17	16001680:16001810:16004563:16005071:16012099:16012226,	16004564	16005071	16004838	16004838	Nonsense_Mutation	C	A	p.E822X
READ	TCGA-F5-6814-01	NCOR1	ENST00000395851.1,ENST00000395848.1	chr17	16001680:16001810:16004563:16005119:16012099:16012226,	16004564	16005119	16004838	16004838	Nonsense_Mutation	C	A	p.E822X
READ	TCGA-F5-6814-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170400553:170400685:170428187:170428283:170428865:170428943,	170428188	170428283	170428250	170428250	Nonsense_Mutation	C	A	p.E577X
READ	TCGA-F5-6814-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21555919:21556060:21581734:21581928:21592309:21592486,	21581735	21581928	21581899	21581899	Nonsense_Mutation	G	T	p.E651X
READ	TCGA-F5-6814-01	NEMF	ENST00000556925.1	chr14	50295333:50295505:50295771:50295980:50296066:50296144,	50295772	50295980	50295812	50295812	Nonsense_Mutation	C	A	p.E398X
READ	TCGA-EI-6917-01	NEO1	ENST00000560262.1	chr15	73581486:73581579:73590688:73590952:73593661:73593798,	73590689	73590952	73590697	73590697	Nonsense_Mutation	C	T	p.R1251X
READ	TCGA-F5-6814-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51214709:51214823:51219235:51219451:51221280:51221350,	51219236	51219451	51219403	51219403	Nonsense_Mutation	C	A	p.E1595X
READ	TCGA-EI-6917-01	NME7	ENST00000367811.3,ENST00000472647.1,ENST00000483228.1	chr1	169138758:169138792:169199955:169200057:169204368:169204437,	169199956	169200057	169199982	169199982	Nonsense_Mutation	G	A	p.R286X
READ	TCGA-EI-6917-01	NME7	ENST00000485609.1	chr1	169279207:169279318:169293630:169293738:169336945:169336968,	169293631	169293738	169293678	169293678	Nonsense_Mutation	G	A	p.R22X
READ	TCGA-F5-6814-01	NMT1	ENST00000592782.1,ENST00000588455.1,ENST00000258960.2,ENST00000543908.1	chr17	43173561:43173653:43174495:43174612:43175749:43175823,	43174496	43174612	43174542	43174542	Nonsense_Mutation	C	T	p.R215X
READ	TCGA-F5-6814-01	NPHS2	ENST00000367615.4	chr1	179523610:179523666:179526161:179526365:179528813:179528896,	179526162	179526365	179526215	179526215	Nonsense_Mutation	G	A	p.R229X
READ	TCGA-EI-6917-01	NR3C1	ENST00000394464.2,ENST00000415690.2,ENST00000343796.2,ENST00000504336.1,ENST00000424646.2,ENST00000416954.2,ENST00000503201.1	chr5	142680125:142680328:142689661:142689778:142693566:142693733,	142689662	142689778	142689695	142689695	Nonsense_Mutation	G	A	p.R479X
READ	TCGA-F5-6814-01	NRCAM	ENST00000379028.3,ENST00000425651.2,ENST00000379022.4	chr7	107800805:107800937:107807365:107807518:107808721:107808847,	107807366	107807518	107807498	107807498	Nonsense_Mutation	C	A	p.E1112X
READ	TCGA-EI-6917-01	NSUN6	ENST00000377304.4	chr10	18898773:18898855:18903388:18903542:18905112:18905222,	18903389	18903542	18903417	18903417	Nonsense_Mutation	C	A	p.E183X
READ	TCGA-EI-6917-01	NUDT17	ENST00000460879.1	chr1	145587719:145587818:145588377:145588635:145588871:145589055,145587719:145587818:145588377:145588635:145589235:145589409,	145588378	145588635	145588452	145588452	Nonsense_Mutation	G	A	p.R141X
READ	TCGA-EI-6917-01	NUDT17	ENST00000334513.5	chr1	145587719:145587818:145588377:145588470:145588609:145588635,	145588378	145588470	145588452	145588452	Nonsense_Mutation	G	A	p.R141X
READ	TCGA-F5-6814-01	NUDT7	ENST00000564085.1	chr16	77759327:77759481:77769724:77769883:77775478:77775721,77759327:77759481:77769724:77769883:77770546:77770640,	77769725	77769883	77769743	77769743	Nonsense_Mutation	G	T	p.E70X
READ	TCGA-AG-3742-01	OAS3	ENST00000228928.7	chr12	113402165:113402213:113403548:113403834:113405222:113405398,	113403549	113403834	113403675	113403675	Nonsense_Mutation	C	T	p.R844X
READ	TCGA-F5-6814-01	ODF2L	ENST00000294678.2	chr1	86820456:86820542:86821027:86821066:86822126:86822227,	86821028	86821066	86821048	86821048	Nonsense_Mutation	C	A	p.E484X
READ	TCGA-EI-6917-01	OLFML1	ENST00000329293.3,ENST00000530135.1	chr11	7507105:7507235:7509357:7509646:7530628:7531580,	7509358	7509646	7509544	7509544	Nonsense_Mutation	C	T	p.R106X
READ	TCGA-F5-6814-01	PAK2	ENST00000327134.3	chr3	196547264:196547438:196554066:196554204:196555189:196555300,	196554067	196554204	196554193	196554193	Nonsense_Mutation	G	T	p.E493X
READ	TCGA-CL-5917-01	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119028135:119028264:119033603:119033695:119065035:119065229,	119033604	119033695	119033668	119033668	Nonsense_Mutation	C	T	p.R976X
READ	TCGA-F5-6814-01	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119028135:119028264:119033603:119033695:119065035:119065229,	119033604	119033695	119033674	119033674	Nonsense_Mutation	G	T	p.E978X
READ	TCGA-F5-6814-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1160X
READ	TCGA-AF-5654-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000459659.1,ENST00000484478.1	chr3	33863526:33863574:33866678:33866832:33867971:33868031,	33866679	33866832	33866733	33866733	Nonsense_Mutation	C	T	p.R173X
READ	TCGA-F5-6814-01	PDLIM3	ENST00000504011.1,ENST00000284767.5	chr4	186427675:186427806:186435856:186436044:186444515:186444600,186435423:186435491:186435856:186436044:186444515:186444600,	186435857	186436044	186436044	186436044	Nonsense_Mutation	C	A	p.E111X
READ	TCGA-F5-6814-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472681	77472681	Nonsense_Mutation	G	A	p.R530X
READ	TCGA-EI-6917-01	PEX3	ENST00000367591.4	chr6	143772116:143772252:143780221:143780353:143784052:143784134,	143780222	143780353	143780305	143780305	Nonsense_Mutation	C	T	p.R53X
READ	TCGA-EI-6882-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022529	11022529	Nonsense_Mutation	C	T	p.R215X
READ	TCGA-EI-6507-01	PHF14	ENST00000481418.1,ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11091242:11091407:11101417:11101468:11101590:11101712,	11101418	11101468	11101436	11101436	Nonsense_Mutation	C	T	p.R834X
READ	TCGA-CL-5917-01	PIGK	ENST00000370812.3,ENST00000359130.1	chr1	77632403:77632515:77634944:77635080:77672324:77672416,	77634945	77635080	77634995	77634995	Nonsense_Mutation	C	A	p.E109X
READ	TCGA-CI-6622-01	PIM1	ENST00000373509.5	chr6	37138974:37139267:37140771:37140948:37141709:37142023,	37140772	37140948	37140933	37140933	Nonsense_Mutation	C	T	p.Q348X
READ	TCGA-DY-A0XA-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51523858	51523858	Nonsense_Mutation	A	T	p.L3689X
READ	TCGA-F5-6814-01	PLA2G7	ENST00000274793.7,ENST00000537365.1	chr6	46677063:46677155:46678281:46678395:46679232:46679356,	46678282	46678395	46678377	46678377	Nonsense_Mutation	C	A	p.E228X
READ	TCGA-EI-6917-01	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927553	43927553	Nonsense_Mutation	G	T	p.E486X
READ	TCGA-F5-6814-01	PLXDC2	ENST00000377238.2,ENST00000377242.3,ENST00000377252.4	chr10	20357098:20357168:20432223:20432346:20436712:20436831,	20432224	20432346	20432241	20432241	Nonsense_Mutation	G	T	p.E187X
READ	TCGA-EI-6917-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6027165	6027165	Nonsense_Mutation	C	A	p.E411X
READ	TCGA-F5-6814-01	PNN	ENST00000553331.1	chr14	39646800:39646891:39647044:39647120:39648294:39648450,39646615:39646688:39647044:39647120:39648294:39648450,	39647045	39647120	39647097	39647097	Nonsense_Mutation	G	T	p.E159X
READ	TCGA-F5-6814-01	PNPLA3	ENST00000497129.1,ENST00000406117.2,ENST00000216180.3,ENST00000423180.2	chr22	44328886:44328967:44330485:44330546:44332930:44333152,	44330486	44330546	44330507	44330507	Nonsense_Mutation	C	T	p.R240X
READ	TCGA-EI-6917-01	POLD4	ENST00000312419.3,ENST00000530584.1,ENST00000532830.1,ENST00000531239.1,ENST00000529704.1	chr11	67119457:67119490:67120161:67120273:67120458:67120548,	67120162	67120273	67120206	67120206	Nonsense_Mutation	C	T	p.W85X
READ	TCGA-EI-6917-01	POU2F3	ENST00000543440.2,ENST00000260264.4,ENST00000533620.1	chr11	120117157:120117226:120139918:120139953:120168973:120169099,	120139919	120139953	120139927	120139927	Nonsense_Mutation	C	T	p.R36X
READ	TCGA-F5-6814-01	PPID	ENST00000307720.3,ENST00000512699.1	chr4	159631779:159631822:159631913:159632000:159634270:159634412,	159631914	159632000	159631931	159631931	Nonsense_Mutation	C	A	p.E322X
READ	TCGA-F5-6814-01	PPP2R2A	ENST00000521557.1,ENST00000523925.1,ENST00000521095.1,ENST00000519439.1,ENST00000524099.1,ENST00000315985.7,ENST00000518397.1,ENST00000380737.3,ENST00000522535.1	chr8	26151184:26151256:26196405:26196503:26211983:26212066,	26196406	26196503	26196444	26196444	Nonsense_Mutation	G	T	p.E51X
READ	TCGA-EI-6917-01	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127915952	127915952	Nonsense_Mutation	G	A	p.R155X
READ	TCGA-EI-6882-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000265636.5,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68318588:68318654:68321612:68321725:68326033:68326147,	68321613	68321725	68321613	68321613	Nonsense_Mutation	C	T	p.R207X
READ	TCGA-EI-6885-01	PRDM2	ENST00000505823.1,ENST00000503842.1	chr1	14099572:14099683:14142921:14143065:14149653:14149914,	14142922	14143065	14142944	14142944	Nonsense_Mutation	C	T	p.R1687X
READ	TCGA-EI-6917-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186275944	186275944	Nonsense_Mutation	G	T	p.E272X
READ	TCGA-DC-6681-01	PRICKLE2	ENST00000564377.1,ENST00000295902.6	chr3	64132505:64133378:64138857:64139044:64142837:64143041,	64138858	64139044	64139008	64139008	Nonsense_Mutation	G	A	p.R213X
READ	TCGA-F5-6814-01	PRPSAP1	ENST00000324684.4,ENST00000494662.1,ENST00000446526.3,ENST00000436498.2,ENST00000435555.2,ENST00000442767.1,ENST00000423915.1	chr17	74328367:74328516:74340751:74340818:74344609:74344662,	74340752	74340818	74340798	74340798	Nonsense_Mutation	C	A	p.E82X
READ	TCGA-F5-6814-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54125437:54125491:54127017:54127154:54128486:54128696,	54127018	54127154	54127040	54127040	Nonsense_Mutation	C	A	p.E1134X
READ	TCGA-F5-6814-01	PTGER3	ENST00000370932.2	chr1	71419445:71419472:71477987:71478167:71512363:71513281,71439979:71440071:71477987:71478167:71512363:71513281,71318255:71318542:71477987:71478167:71512363:71513281,	71477988	71478167	71478095	71478095	Nonsense_Mutation	C	A	p.E324X
READ	TCGA-F5-6814-01	PTGER3	ENST00000351052.5	chr1	71439979:71440071:71477900:71478167:71512363:71513281,	71477901	71478167	71478095	71478095	Nonsense_Mutation	C	A	p.E324X
READ	TCGA-EI-7002-01	PTPN4	ENST00000263708.2,ENST00000430976.1	chr2	120640078:120640199:120643370:120643458:120658293:120658382,	120643371	120643458	120643426	120643426	Nonsense_Mutation	G	T	p.E215X
READ	TCGA-EI-6917-01	PUS3	ENST00000227474.3,ENST00000530811.1	chr11	125763381:125764181:125765118:125765684:125765801:125766225,	125765119	125765684	125765162	125765162	Nonsense_Mutation	C	A	p.E301X
READ	TCGA-F5-6814-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111266	105111266	Nonsense_Mutation	C	A	p.E423X
READ	TCGA-F5-6814-01	PUS7	ENST00000481939.1	chr7	105108783:105108910:105111207:105111295:105112578:105112635,	105111208	105111295	105111266	105111266	Nonsense_Mutation	C	A	p.E423X
READ	TCGA-F5-6814-01	RAB21	ENST00000261263.3,ENST00000358546.3	chr12	72164389:72164479:72167738:72167802:72175810:72175865,	72167739	72167802	72167757	72167757	Nonsense_Mutation	G	T	p.E116X
READ	TCGA-F5-6814-01	RAB23	ENST00000468148.1,ENST00000317483.3	chr6	57061247:57061404:57072425:57072511:57075023:57075243,	57072426	57072511	57072429	57072429	Nonsense_Mutation	G	A	p.R80X
READ	TCGA-EI-6917-01	RAD1	ENST00000513914.1	chr5	34911722:34911917:34913574:34913683:34914799:34914906,34911722:34911917:34913574:34913683:34914031:34914131,	34913575	34913683	34913635	34913635	Nonsense_Mutation	G	A	p.R83X
READ	TCGA-F5-6814-01	RAD21	ENST00000523547.1,ENST00000519837.1,ENST00000522699.1,ENST00000297338.2,ENST00000517485.1,ENST00000520992.1	chr8	117874092:117874179:117875368:117875498:117878824:117879000,	117875369	117875498	117875405	117875405	Nonsense_Mutation	C	A	p.E80X
READ	TCGA-F5-6814-01	RANBP1	ENST00000448394.1,ENST00000331821.3	chr22	20112830:20112959:20113825:20113891:20114477:20114558,20112830:20112959:20113825:20113891:20114474:20114704,	20113826	20113891	20113855	20113855	Nonsense_Mutation	G	T	p.E157X
READ	TCGA-F5-6814-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109382601	109382601	Nonsense_Mutation	C	A	p.S1869X
READ	TCGA-F5-6814-01	RAPGEF3	ENST00000171000.4,ENST00000479866.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2	chr12	48135287:48135385:48137312:48137459:48137769:48137851,	48137313	48137459	48137388	48137388	Nonsense_Mutation	C	A	p.E542X
READ	TCGA-DC-6157-01	RB1CC1	ENST00000435644.2,ENST00000025008.5	chr8	53596509:53596573:53597958:53598080:53599412:53599527,	53597959	53598080	53598018	53598018	Nonsense_Mutation	A	T	p.Y4X
READ	TCGA-EI-6917-01	RBM6	ENST00000442092.1,ENST00000539992.1,ENST00000419610.1,ENST00000443081.1,ENST00000422955.1,ENST00000454079.1,ENST00000266022.4	chr3	50106122:50106197:50107887:50107985:50112633:50112763,	50107888	50107985	50107968	50107968	Nonsense_Mutation	C	A	p.Y1033X
READ	TCGA-F5-6814-01	RCAN2	ENST00000306764.7,ENST00000405162.1,ENST00000371374.1	chr6	46214484:46214656:46216459:46216633:46424488:46424713,	46216460	46216633	46216525	46216525	Nonsense_Mutation	G	A	p.R112X
READ	TCGA-F5-6814-01	RDH11	ENST00000428130.2,ENST00000381346.4,ENST00000553816.1	chr14	68157856:68157961:68159154:68159310:68162346:68162434,68157856:68157961:68159154:68159310:68159650:68159769,	68159155	68159310	68159182	68159182	Nonsense_Mutation	G	A	p.R108X
READ	TCGA-F5-6814-01	REPS1	ENST00000409812.2,ENST00000367663.4,ENST00000450536.2,ENST00000258062.5,ENST00000415951.2,ENST00000529597.1,ENST00000431346.2	chr6	139264649:139264713:139264989:139265152:139265634:139265682,	139264990	139265152	139265107	139265107	Nonsense_Mutation	C	A	p.E267X
READ	TCGA-EI-6917-01	RER1	ENST00000378513.3,ENST00000378518.1	chr1	2327228:2327310:2328554:2328659:2330853:2330953,2327222:2327310:2328554:2328659:2332295:2332374,	2328555	2328659	2328642	2328642	Nonsense_Mutation	C	T	p.R57X
READ	TCGA-F5-6814-01	REXO4	ENST00000371942.3	chr9	136273891:136273966:136276104:136276193:136277418:136277612,	136276105	136276193	136276182	136276182	Nonsense_Mutation	C	A	p.E308X
READ	TCGA-F5-6814-01	RGS10	ENST00000369101.3,ENST00000369103.2,ENST00000392865.1	chr10	121275054:121275164:121285543:121285630:121286817:121286936,	121285544	121285630	121285603	121285603	Nonsense_Mutation	C	A	p.E66X
READ	TCGA-EI-6917-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101076056	101076056	Nonsense_Mutation	C	A	p.E314X
READ	TCGA-EI-6917-01	RGS8	ENST00000258302.4	chr1	182635125:182635168:182636006:182636108:182640791:182640865,	182636007	182636108	182636089	182636089	Nonsense_Mutation	G	A	p.R34X
READ	TCGA-EI-6917-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323719	59323719	Nonsense_Mutation	T	G	p.L233X
READ	TCGA-EI-6917-01	RNLS	ENST00000371947.3,ENST00000331772.4,ENST00000437752.1	chr10	90074269:90074398:90122308:90122482:90332659:90332818,	90122309	90122482	90122432	90122432	Nonsense_Mutation	G	A	p.R193X
READ	TCGA-F5-6814-01	RPAP2	ENST00000610020.1,ENST00000484158.1	chr1	92769840:92769906:92772744:92772833:92786155:92786191,	92772745	92772833	92772826	92772826	Nonsense_Mutation	G	T	p.E161X
READ	TCGA-F5-6814-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53675196:53675387:53679536:53679915:53682875:53683027,	53679537	53679915	53679807	53679807	Nonsense_Mutation	G	A	p.R805X
READ	TCGA-AF-6136-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213414659	213414659	Nonsense_Mutation	G	T	p.G614X
READ	TCGA-F5-6814-01	RSPH9	ENST00000372163.4	chr6	43612782:43613062:43618111:43618277:43623298:43623428,	43618112	43618277	43618269	43618269	Nonsense_Mutation	G	T	p.E129X
READ	TCGA-F5-6814-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022544	64022544	Nonsense_Mutation	G	A	p.R33X
READ	TCGA-F5-6814-01	RUFY1	ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1	chr5	179012796:179012866:179016546:179016648:179018625:179018742,	179016547	179016648	179016622	179016622	Nonsense_Mutation	C	T	p.R368X
READ	TCGA-F5-6814-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171607	36171607	Nonsense_Mutation	G	A	p.R320X
READ	TCGA-F5-6814-01	RXFP2	ENST00000380314.1,ENST00000298386.2	chr13	32363258:32363330:32365942:32366172:32366814:32367225,	32365943	32366172	32365959	32365959	Nonsense_Mutation	C	T	p.R364X
READ	TCGA-F5-6814-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000542537.1	chr1	237838063:237838146:237841347:237841412:237843755:237843877,	237841348	237841412	237841392	237841392	Nonsense_Mutation	G	T	p.E2959X
READ	TCGA-EI-6882-01	SAMD12	ENST00000314727.4,ENST00000526328.1	chr8	119452100:119452200:119592953:119593132:119634042:119634132,	119592954	119593132	119593040	119593040	Nonsense_Mutation	G	A	p.Q36X
READ	TCGA-DC-6157-01	SAMM50	ENST00000350028.4,ENST00000396202.3	chr22	44369115:44369203:44371934:44372063:44372629:44372701,	44371935	44372063	44371983	44371983	Nonsense_Mutation	C	T	p.R233X
READ	TCGA-DC-6158-01	SCAPER	ENST00000568549.1	chr15	77067272:77067458:77087581:77087781:77092588:77092608,	77087582	77087781	77087666	77087666	Nonsense_Mutation	G	A	p.Q243X
READ	TCGA-DC-6158-01	SCAPER	ENST00000324767.7,ENST00000565507.1,ENST00000565970.1,ENST00000564590.1,ENST00000563290.1,ENST00000303521.6	chr15	77067324:77067458:77087620:77087781:77092588:77092608,	77087621	77087781	77087666	77087666	Nonsense_Mutation	G	A	p.Q243X
READ	TCGA-EF-5830-01	SCN3B	ENST00000392770.2,ENST00000528267.1,ENST00000299333.3,ENST00000530277.1,ENST00000527836.1	chr11	123513317:123513379:123516294:123516458:123524454:123524534,	123516295	123516458	123516432	123516432	Nonsense_Mutation	C	A	p.E28X
READ	TCGA-F5-6814-01	SCRN1	ENST00000409570.1	chr7	29994794:29994976:30008524:30008684:30029558:30029688,29994794:29994976:30008524:30008684:30029257:30029328,	30008525	30008684	30008575	30008575	Nonsense_Mutation	C	A	p.E37X
READ	TCGA-F5-6814-01	SCRN1	ENST00000494620.1	chr7	29994794:29994976:30008524:30008629:30029558:30029688,	30008525	30008629	30008575	30008575	Nonsense_Mutation	C	A	p.E37X
READ	TCGA-EI-6917-01	SEC24A	ENST00000398844.2,ENST00000322887.4	chr5	134010734:134010907:134011712:134011815:134015291:134015418,	134011713	134011815	134011720	134011720	Nonsense_Mutation	C	T	p.R387X
READ	TCGA-EI-6917-01	SELL	ENST00000463108.1,ENST00000236147.4	chr1	169672457:169672581:169673708:169673894:169676482:169676590,	169673709	169673894	169673763	169673763	Nonsense_Mutation	C	A	p.E251X
READ	TCGA-DC-6154-01	SENP2	ENST00000413407.1,ENST00000473760.1,ENST00000545472.1,ENST00000427465.2,ENST00000296257.5	chr3	185324117:185324286:185327034:185327138:185329438:185329533,	185327035	185327138	185327065	185327065	Nonsense_Mutation	C	T	p.R217X
READ	TCGA-F5-6814-01	SIK2	ENST00000304987.3	chr11	111486966:111487083:111491062:111491126:111558724:111558886,	111491063	111491126	111491117	111491117	Nonsense_Mutation	G	T	p.E103X
READ	TCGA-AG-3725-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75664322:75664550:75668005:75668213:75672969:75673064,	75668006	75668213	75668179	75668179	Nonsense_Mutation	G	A	p.R1140X
READ	TCGA-EI-6507-01	SLC25A16	ENST00000609923.1	chr10	70266383:70266475:70276507:70276600:70287002:70287173,	70276508	70276600	70276587	70276587	Nonsense_Mutation	G	T	p.C48X
READ	TCGA-F5-6814-01	SLC30A9	ENST00000513699.1,ENST00000264451.7	chr4	42025318:42025401:42037291:42037350:42041002:42041070,	42037292	42037350	42037321	42037321	Nonsense_Mutation	G	T	p.E214X
READ	TCGA-EI-6917-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545400	196545400	Nonsense_Mutation	G	T	p.E212X
READ	TCGA-F5-6814-01	SLC39A10	ENST00000465851.1,ENST00000409086.3,ENST00000541054.1,ENST00000430412.1,ENST00000359634.5	chr2	196573379:196573568:196578156:196578277:196581360:196581729,	196578157	196578277	196578193	196578193	Nonsense_Mutation	G	T	p.E538X
READ	TCGA-EI-6507-01	SLC5A6	ENST00000310574.3,ENST00000408041.1,ENST00000488743.2	chr2	27423303:27423447:27423865:27423981:27424217:27424321,	27423866	27423981	27423973	27423973	Nonsense_Mutation	G	A	p.R553X
READ	TCGA-F5-6814-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962834:72962954:72965029:72965209:72965291:72965387,	72965030	72965209	72965072	72965072	Nonsense_Mutation	C	T	p.R978X
READ	TCGA-F5-6814-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17906523:17906625:17907655:17907736:17912344:17912406,	17907656	17907736	17907706	17907706	Nonsense_Mutation	C	A	p.E192X
READ	TCGA-F5-6814-01	SNCA	ENST00000394991.3,ENST00000506244.1,ENST00000336904.3,ENST00000505199.1,ENST00000394986.1,ENST00000394989.2,ENST00000508895.1	chr4	90647766:90647811:90650344:90650428:90743396:90743539,	90650345	90650428	90650359	90650359	Nonsense_Mutation	C	A	p.E126X
READ	TCGA-EI-6917-01	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121758562:121759434:121767663:121767777,121739487:121739560:121758562:121759434:121761046:121761226,	121758563	121759434	121759237	121759237	Nonsense_Mutation	C	T	p.R269X
READ	TCGA-F5-6814-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409076.2	chr7	17833387:17833916:17836449:17836562:17838312:17838381,	17836450	17836562	17836501	17836501	Nonsense_Mutation	G	A	p.R859X
READ	TCGA-DY-A1DC-01	SNX14	ENST00000346348.3,ENST00000369627.2,ENST00000515216.1,ENST00000503491.1,ENST00000369635.2,ENST00000508980.1,ENST00000314673.3,ENST00000508658.1,ENST00000505648.1,ENST00000513865.1	chr6	86223574:86223613:86223787:86223952:86224223:86224331,	86223788	86223952	86223808	86223808	Nonsense_Mutation	G	T	p.S793X
READ	TCGA-F5-6814-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39234171:39234334:39237724:39237844:39239266:39239489,	39237725	39237844	39237759	39237759	Nonsense_Mutation	G	A	p.R826X
READ	TCGA-EI-6917-01	SPOCK3	ENST00000507370.1,ENST00000541354.1,ENST00000421836.2,ENST00000511269.1,ENST00000504953.1,ENST00000511905.1,ENST00000534949.1,ENST00000505187.1,ENST00000502821.1,ENST00000511531.1,ENST00000512681.1,ENST00000357154.3,ENST00000502330.1,ENST00000357545.4,ENST00000506886.1,ENST00000507137.1,ENST00000541637.1	chr4	167663147:167663210:167675658:167675880:167713320:167713440,	167675659	167675880	167675755	167675755	Nonsense_Mutation	C	A	p.E239X
READ	TCGA-EI-6917-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466657	65466657	Nonsense_Mutation	G	T	p.E340X
READ	TCGA-EI-6917-01	STAU1	ENST00000340954.7,ENST00000371792.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47740911:47741124:47752369:47752468:47768118:47768284,	47752370	47752468	47752456	47752456	Nonsense_Mutation	C	A	p.E94X
READ	TCGA-F5-6814-01	STK17A	ENST00000462448.1,ENST00000319357.5	chr7	43635499:43635712:43647854:43647999:43659195:43659322,	43647855	43647999	43647901	43647901	Nonsense_Mutation	G	T	p.E156X
READ	TCGA-F5-6814-01	STK38	ENST00000229812.7	chr6	36492117:36492240:36493367:36493419:36507848:36507981,	36493368	36493419	36493406	36493406	Nonsense_Mutation	C	A	p.E49X
READ	TCGA-EI-6917-01	STK38L	ENST00000543246.1,ENST00000544969.1,ENST00000546286.1,ENST00000541191.1,ENST00000389032.3,ENST00000407753.2	chr12	27455073:27455121:27461271:27461394:27462046:27462130,	27461272	27461394	27461305	27461305	Nonsense_Mutation	G	T	p.E74X
READ	TCGA-EI-6917-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789X
READ	TCGA-F5-6814-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70515426:70515555:70515834:70515891:70517037:70517167,	70515835	70515891	70515839	70515839	Nonsense_Mutation	C	T	p.R399X
READ	TCGA-EI-6507-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70517037:70517167:70533269:70533486:70536176:70536432,	70533270	70533486	70533459	70533459	Nonsense_Mutation	C	T	p.Q523X
READ	TCGA-F5-6814-01	SYK	ENST00000375754.4,ENST00000375751.4,ENST00000375746.1,ENST00000375747.1	chr9	93641045:93641235:93650030:93650171:93650796:93650909,	93650031	93650171	93650169	93650169	Nonsense_Mutation	C	T	p.R551X
READ	TCGA-F5-6814-01	SYT14	ENST00000422431.1,ENST00000469604.1,ENST00000537238.1,ENST00000271745.7,ENST00000367015.1,ENST00000367019.1,ENST00000534859.1,ENST00000399639.2,ENST00000472886.1	chr1	210194390:210194599:210267666:210267938:210273356:210273535,	210267667	210267938	210267870	210267870	Nonsense_Mutation	G	T	p.E216X
READ	TCGA-EI-6917-01	TACC1	ENST00000522904.1,ENST00000520973.1,ENST00000518415.1,ENST00000520615.1,ENST00000317827.4,ENST00000443286.2,ENST00000520340.1	chr8	38646221:38646337:38677039:38678153:38682825:38682886,	38677040	38678153	38677639	38677639	Nonsense_Mutation	G	T	p.E293X
READ	TCGA-AF-2693-01	TAF5	ENST00000369839.3,ENST00000351396.4	chr10	105133114:105133352:105137991:105138307:105139364:105139528,	105137992	105138307	105138095	105138095	Nonsense_Mutation	C	T	p.R301X
READ	TCGA-F5-6814-01	TAMM41	ENST00000457498.1,ENST00000444133.2,ENST00000273037.5,ENST00000455809.1	chr3	11850990:11851156:11858665:11858811:11871187:11871338,	11858666	11858811	11858737	11858737	Nonsense_Mutation	G	A	p.R213X
READ	TCGA-F5-6814-01	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1	chr5	33463857:33463930:33466975:33467090:33467664:33467943,	33466976	33467090	33467054	33467054	Nonsense_Mutation	C	T	p.R663X
READ	TCGA-F5-6814-01	TBC1D4	ENST00000431480.2,ENST00000488955.1	chr13	75894149:75894173:75898372:75898537:75900332:75900386,75886917:75887034:75898372:75898537:75900332:75900386,	75898373	75898537	75898521	75898521	Nonsense_Mutation	G	A	p.R684X
READ	TCGA-EI-6917-01	TBC1D8B	ENST00000357242.5,ENST00000276175.3	chrX	106096741:106096880:106097427:106097526:106108788:106108857,	106097428	106097526	106097473	106097473	Nonsense_Mutation	C	T	p.R767X
READ	TCGA-EI-6885-01	TBX2	ENST00000240328.3,ENST00000419047.1	chr17	59481966:59482130:59482562:59483197:59485414:59486786,	59482563	59483197	59482793	59482793	Nonsense_Mutation	G	T	p.E428X
READ	TCGA-F5-6814-01	TCTN3	ENST00000371217.5,ENST00000430368.2,ENST00000265993.9	chr10	97423452:97424057:97440228:97440366:97442407:97442561,	97440229	97440366	97440258	97440258	Nonsense_Mutation	G	A	p.R373X
READ	TCGA-EI-6917-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609005	179609005	Nonsense_Mutation	C	T	p.R518X
READ	TCGA-AF-2693-01	TEAD4	ENST00000359864.2,ENST00000358409.2,ENST00000397122.2	chr12	3131009:3131183:3147133:3147274:3149272:3149425,	3147134	3147274	3147233	3147233	Nonsense_Mutation	A	T	p.K333X
READ	TCGA-F5-6814-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158101	27158101	Nonsense_Mutation	G	T	p.E109X
READ	TCGA-EI-6917-01	TESK2	ENST00000451835.2,ENST00000486676.1,ENST00000372086.3,ENST00000341771.6	chr1	45887396:45887518:45923235:45923543:45956523:45956815,	45923236	45923543	45923328	45923328	Nonsense_Mutation	G	A	p.R44X
READ	TCGA-EI-6917-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155544	106155544	Nonsense_Mutation	G	T	p.E149X
READ	TCGA-F5-6814-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157446	106157446	Nonsense_Mutation	G	T	p.E783X
READ	TCGA-EI-6917-01	TFCP2L1	ENST00000263707.5	chr2	121999934:122000045:122004393:122004546:122005739:122005812,	122004394	122004546	122004483	122004483	Nonsense_Mutation	G	A	p.R190X
READ	TCGA-EI-6512-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134339	128134339	Nonsense_Mutation	C	A	p.E483X
READ	TCGA-CI-6624-01	TIE1	ENST00000473014.1	chr1	43779448:43779639:43782869:43783743:43784905:43785019,	43782870	43783743	43783728	43783728	Nonsense_Mutation	C	A	p.Y924X
READ	TCGA-F5-6814-01	TIPARP	ENST00000481853.1,ENST00000486483.1,ENST00000461166.1,ENST00000542783.1,ENST00000295924.7,ENST00000473702.1	chr3	156395445:156396403:156411808:156411977:156413653:156413814,	156411809	156411977	156411816	156411816	Nonsense_Mutation	G	T	p.E309X
READ	TCGA-EI-6917-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69072295:69072471:69073205:69073331:69074710:69074863,	69073206	69073331	69073286	69073286	Nonsense_Mutation	C	A	p.E1020X
READ	TCGA-EI-6917-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69075146:69075248:69077050:69077143:69077376:69077446,	69077051	69077143	69077095	69077095	Nonsense_Mutation	C	A	p.E905X
READ	TCGA-F5-6814-01	TMLHE	ENST00000369439.4,ENST00000334398.3	chrX	154743646:154743926:154754116:154754293:154774756:154774938,	154754117	154754293	154754246	154754246	Nonsense_Mutation	G	A	p.R77X
READ	TCGA-F5-6814-01	TMPRSS11D	ENST00000505533.1,ENST00000283916.6,ENST00000545541.1	chr4	68691524:68691592:68692978:68693238:68698921:68699099,	68692979	68693238	68692988	68692988	Nonsense_Mutation	C	A	p.E315X
READ	TCGA-F5-6814-01	TNFAIP2	ENST00000560562.1,ENST00000560428.1,ENST00000559406.1,ENST00000451723.2,ENST00000560670.1,ENST00000560869.1,ENST00000333007.1	chr14	103596338:103596461:103596651:103596752:103597388:103597487,	103596652	103596752	103596730	103596730	Nonsense_Mutation	G	T	p.E393X
READ	TCGA-F5-6814-01	TNFRSF11A	ENST00000586569.1	chr18	60033940:60033993:60035933:60036717:60051983:60054892,	60035934	60036717	60036133	60036133	Nonsense_Mutation	C	A	p.S328X
READ	TCGA-F5-6814-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24769659:24769681:24788253:24788679:24800552:24803138,	24788254	24788679	24788505	24788505	Nonsense_Mutation	C	T	p.R139X
READ	TCGA-EI-6917-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661483	40661483	Nonsense_Mutation	C	T	p.R417X
READ	TCGA-F5-6814-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662371	40662371	Nonsense_Mutation	C	T	p.R713X
READ	TCGA-EI-6917-01	TNRC6B	ENST00000402203.1,ENST00000335727.9,ENST00000301923.9,ENST00000446273.1,ENST00000454349.2	chr22	40669428:40669604:40673080:40673155:40674002:40674048,	40673081	40673155	40673109	40673109	Nonsense_Mutation	C	A	p.S1004X
READ	TCGA-EI-6512-01	TOPBP1	ENST00000260810.5	chr3	133331232:133331396:133335657:133335769:133336003:133336170,	133335658	133335769	133335718	133335718	Nonsense_Mutation	G	A	p.Q1271X
READ	TCGA-EI-6881-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
READ	TCGA-DT-5265-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577079	7577079	Nonsense_Mutation	C	A	p.E287X
READ	TCGA-EI-6917-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
READ	TCGA-F5-6814-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
READ	TCGA-DC-6154-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
READ	TCGA-F5-6571-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
READ	TCGA-G5-6235-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579536	7579536	Nonsense_Mutation	C	A	p.E51X
READ	TCGA-F5-6814-01	TPR	ENST00000474852.1,ENST00000367478.4	chr1	186332473:186332577:186337017:186337114:186340101:186340175,	186337018	186337114	186337090	186337090	Nonsense_Mutation	C	A	p.E119X
READ	TCGA-EI-6917-01	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687250	5687250	Nonsense_Mutation	G	A	p.R277X
READ	TCGA-EI-6507-01	TRIP11	ENST00000554357.1,ENST00000267622.4,ENST00000557017.1	chr14	92460152:92460256:92461695:92461859:92465583:92465723,	92461696	92461859	92461696	92461696	Nonsense_Mutation	C	A	p.E1686X
READ	TCGA-F5-6814-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92469840	92469840	Nonsense_Mutation	G	A	p.R1494X
READ	TCGA-F5-6814-01	TRIP4	ENST00000261884.3	chr15	64717738:64717830:64737204:64737307:64747195:64747435,	64737205	64737307	64737223	64737223	Nonsense_Mutation	G	T	p.E532X
READ	TCGA-AG-3731-01	TRIP6	ENST00000200457.4,ENST00000476870.1	chr7	100469164:100469343:100470245:100470366:100470793:100471075,	100470246	100470366	100470316	100470316	Nonsense_Mutation	A	T	p.R417X
READ	TCGA-F5-6814-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116632180	116632180	Nonsense_Mutation	C	A	p.E49X
READ	TCGA-F5-6814-01	TSEN15	ENST00000533373.1,ENST00000361641.1	chr1	184023494:184023569:184023861:184023997:184041960:184042114,184023494:184023569:184023861:184023997:184041290:184041328,	184023862	184023997	184023900	184023900	Nonsense_Mutation	G	T	p.E86X
READ	TCGA-F5-6814-01	TTC14	ENST00000465625.1	chr3	180325435:180325553:180326488:180326598:180327417:180327791,180325950:180326059:180326488:180326598:180327417:180327791,	180326489	180326598	180326507	180326507	Nonsense_Mutation	G	T	p.E437X
READ	TCGA-F5-6814-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604954	179604954	Nonsense_Mutation	C	A	p.E4019X
READ	TCGA-DC-6683-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605073	179605073	Nonsense_Mutation	G	C	p.S3979X
READ	TCGA-F5-6814-01	TYW5	ENST00000441832.1,ENST00000483328.1	chr2	200804811:200804856:200808487:200808557:200813059:200813195,	200808488	200808557	200808505	200808505	Nonsense_Mutation	C	A	p.E96X
READ	TCGA-F5-6814-01	UACA	ENST00000379983.2,ENST00000560831.1,ENST00000322954.6,ENST00000539319.1,ENST00000560441.1	chr15	70949315:70949466:70952489:70952555:70957000:70957153,	70952490	70952555	70952534	70952534	Nonsense_Mutation	C	A	p.E1379X
READ	TCGA-F5-6814-01	UBE4A	ENST00000252108.3,ENST00000431736.2	chr11	118244208:118244400:118245610:118245944:118247288:118247409,	118245611	118245944	118245674	118245674	Nonsense_Mutation	G	T	p.E401X
READ	TCGA-DC-6681-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10228193:10228328:10231195:10231387:10238701:10238876,	10231196	10231387	10231208	10231208	Nonsense_Mutation	C	T	p.R1116X
READ	TCGA-EI-6917-01	UBXN2B	ENST00000399598.2,ENST00000521796.1,ENST00000523409.1,ENST00000522978.1	chr8	59329488:59329512:59343077:59343228:59345718:59345802,	59343078	59343228	59343121	59343121	Nonsense_Mutation	C	T	p.R78X
READ	TCGA-F5-6814-01	UGGT2	ENST00000376747.3	chr13	96624833:96624925:96636057:96636118:96638586:96638686,	96636058	96636118	96636078	96636078	Nonsense_Mutation	C	A	p.E358X
READ	TCGA-F5-6814-01	UGGT2	ENST00000461329.1,ENST00000465196.1,ENST00000376747.3,ENST00000397618.3	chr13	96638586:96638686:96642226:96642327:96648316:96648389,	96642227	96642327	96642326	96642326	Nonsense_Mutation	C	A	p.E278X
READ	TCGA-F5-6814-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12071078	12071078	Nonsense_Mutation	C	A	p.E271X
READ	TCGA-F5-6814-01	USP25	ENST00000400183.2,ENST00000285679.6,ENST00000351097.5,ENST00000285681.2	chr21	17242386:17242466:17246721:17246845:17250114:17250310,	17246722	17246845	17246810	17246810	Nonsense_Mutation	G	T	p.E922X
READ	TCGA-EI-6917-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113704982	113704982	Nonsense_Mutation	G	A	p.R204X
READ	TCGA-F5-6814-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113705033	113705033	Nonsense_Mutation	G	A	p.R187X
READ	TCGA-EI-6917-01	UTP20	ENST00000261637.4	chr12	101738372:101738528:101739331:101739472:101740228:101740366,	101739332	101739472	101739349	101739349	Nonsense_Mutation	T	G	p.Y1541X
READ	TCGA-EI-6882-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82834553	82834553	Nonsense_Mutation	C	T	p.R924X
READ	TCGA-EI-6917-01	VPS13B	ENST00000496144.1,ENST00000395996.1	chr8	100515063:100515178:100519997:100520139:100523331:100523740,100519364:100519431:100519997:100520139:100523331:100523740,	100519998	100520139	100520086	100520086	Nonsense_Mutation	C	T	p.R1416X
READ	TCGA-EI-6917-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62214595:62214961:62217654:62217747:62219289:62219519,	62217655	62217747	62217669	62217669	Nonsense_Mutation	C	A	p.E2156X
READ	TCGA-F5-6814-01	VPS45	ENST00000535106.1,ENST00000369130.3,ENST00000369128.5	chr1	150064098:150064189:150064395:150064503:150065622:150065744,	150064396	150064503	150064438	150064438	Nonsense_Mutation	G	T	p.G436X
READ	TCGA-F5-6814-01	WARS	ENST00000553808.1,ENST00000556504.1,ENST00000554331.1,ENST00000392882.2,ENST00000556698.1,ENST00000557722.1,ENST00000555063.1,ENST00000556645.1,ENST00000358655.4,ENST00000554084.1,ENST00000555410.1,ENST00000355338.2,ENST00000556435.1,ENST00000556338.1,ENST00000553395.1,ENST00000344102.5,ENST00000557135.1,ENST00000553524.1,ENST00000557297.1	chr14	100820896:100820903:100826890:100826999:100828044:100828239,	100826891	100826999	100826958	100826958	Nonsense_Mutation	G	A	p.R119X
READ	TCGA-EI-6917-01	WDHD1	ENST00000420358.2,ENST00000567693.1,ENST00000360586.3,ENST00000421192.1,ENST00000359167.4	chr14	55408207:55408408:55411049:55411188:55422278:55422412,	55411050	55411188	55411082	55411082	Nonsense_Mutation	G	A	p.R1053X
READ	TCGA-AF-3911-01	WDHD1	ENST00000420358.2,ENST00000567693.1,ENST00000360586.3,ENST00000421192.1,ENST00000359167.4	chr14	55423751:55423922:55424309:55424353:55429215:55429269,	55424310	55424353	55424327	55424327	Nonsense_Mutation	G	A	p.R910X
READ	TCGA-F5-6814-01	WDR19	ENST00000502389.1,ENST00000503697.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3,ENST00000506503.1	chr4	39187345:39187437:39188158:39188224:39191275:39191401,	39188159	39188224	39188208	39188208	Nonsense_Mutation	G	T	p.E50X
READ	TCGA-F5-6814-01	WDR63	ENST00000294664.6,ENST00000464801.1,ENST00000370596.1,ENST00000326813.8	chr1	85594390:85594482:85595672:85595795:85598537:85598710,	85595673	85595795	85595769	85595769	Nonsense_Mutation	G	T	p.E836X
READ	TCGA-F5-6814-01	WDR70	ENST00000511906.1,ENST00000510699.1,ENST00000265107.4	chr5	37516615:37516692:37605165:37605340:37697756:37697856,	37605166	37605340	37605188	37605188	Nonsense_Mutation	G	T	p.E314X
READ	TCGA-F5-6814-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051073	96051073	Nonsense_Mutation	C	A	p.S1346X
READ	TCGA-F5-6814-01	WWC2	ENST00000403733.3,ENST00000427431.1,ENST00000448232.2,ENST00000504005.1,ENST00000513834.1	chr4	184187021:184187104:184190123:184190316:184192232:184192394,	184190124	184190316	184190283	184190283	Nonsense_Mutation	C	A	p.C789X
READ	TCGA-EI-6917-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099253	168099253	Nonsense_Mutation	G	T	p.E229X
READ	TCGA-F5-6814-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103237	168103237	Nonsense_Mutation	G	T	p.E1557X
READ	TCGA-F5-6814-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103936	168103936	Nonsense_Mutation	G	T	p.E1790X
READ	TCGA-F5-6814-01	XRCC4	ENST00000282268.3,ENST00000542685.1,ENST00000338635.6,ENST00000509268.1,ENST00000511817.1,ENST00000396027.4	chr5	82406846:82407022:82491588:82491755:82499370:82499526,	82491589	82491755	82491646	82491646	Nonsense_Mutation	G	T	p.E125X
READ	TCGA-AG-4022-01	ZAP70	ENST00000483781.1,ENST00000264972.5	chr2	98330378:98330457:98340478:98340901:98341554:98341705,	98340479	98340901	98340854	98340854	Nonsense_Mutation	C	T	p.R119X
READ	TCGA-F5-6814-01	ZBTB11	ENST00000312938.4	chr3	101373547:101373665:101374947:101375092:101378626:101378767,	101374948	101375092	101374969	101374969	Nonsense_Mutation	C	A	p.E724X
READ	TCGA-F5-6465-01	ZBTB48	ENST00000482360.1,ENST00000466813.1,ENST00000377674.4	chr1	6648341:6648502:6648815:6648904:6648975:6649220,	6648816	6648904	6648899	6648899	Nonsense_Mutation	C	T	p.R589X
READ	TCGA-F5-6814-01	ZC3H14	ENST00000359301.3,ENST00000336693.4,ENST00000556945.1,ENST00000555755.1,ENST00000557693.1,ENST00000251038.5,ENST00000393514.5,ENST00000302216.8	chr14	89029994:89030037:89034382:89034497:89037427:89037468,	89034383	89034497	89034484	89034484	Nonsense_Mutation	C	T	p.R61X
READ	TCGA-F5-6814-01	ZC3H14	ENST00000555120.1,ENST00000554602.1	chr14	89029994:89030037:89034201:89034497:89037427:89037468,	89034202	89034497	89034484	89034484	Nonsense_Mutation	C	T	p.R61X
READ	TCGA-F5-6814-01	ZC3H14	ENST00000406216.3,ENST00000359301.3,ENST00000318308.6,ENST00000556000.1,ENST00000336693.4,ENST00000555851.2,ENST00000556945.1,ENST00000555755.1,ENST00000554020.1,ENST00000555792.1,ENST00000251038.5,ENST00000555900.1,ENST00000557491.1,ENST00000557607.1,ENST00000393514.5,ENST00000302216.8	chr14	89076070:89076147:89077177:89077284:89078088:89078154,	89077178	89077284	89077271	89077271	Nonsense_Mutation	C	T	p.R725X
READ	TCGA-F5-6814-01	ZC3H7A	ENST00000575041.1	chr16	11862170:11862357:11864638:11864843:11868091:11868148,	11864639	11864843	11864665	11864665	Nonsense_Mutation	G	T	p.S361X
READ	TCGA-F5-6814-01	ZCCHC10	ENST00000513848.1	chr5	132335823:132335865:132342450:132342612:132358532:132358598,132334396:132334542:132342450:132342612:132362188:132362237,	132342451	132342612	132342482	132342482	Nonsense_Mutation	C	A	p.E58X
READ	TCGA-F5-6814-01	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44975379:44975476:44986659:44986784:45000618:45000924,44975379:44975476:44986659:44986784:45000622:45000952,	44986660	44986784	44986754	44986754	Nonsense_Mutation	C	A	p.E113X
READ	TCGA-EI-6917-01	ZDHHC4	ENST00000396713.2,ENST00000405731.3,ENST00000396709.1,ENST00000396707.2,ENST00000335965.6,ENST00000396706.2	chr7	6621703:6621882:6622936:6623062:6624646:6624891,	6622937	6623062	6622957	6622957	Nonsense_Mutation	G	T	p.E131X
READ	TCGA-F5-6861-01	ZDHHC7	ENST00000313732.4	chr16	85012794:85012891:85015475:85015600:85023909:85024232,	85015476	85015600	85015570	85015570	Nonsense_Mutation	C	A	p.E116X
READ	TCGA-F5-6814-01	ZEB2	ENST00000539609.3	chr2	145161561:145161697:145162402:145162591:145182362:145182434,145161561:145161697:145162402:145162591:145187335:145187593,	145162403	145162591	145162409	145162409	Nonsense_Mutation	C	A	p.E172X
READ	TCGA-EI-6917-01	ZFAND3	ENST00000287218.4,ENST00000373389.5	chr6	37897734:37897775:38029368:38029551:38050167:38050233,	38029369	38029551	38029518	38029518	Nonsense_Mutation	G	T	p.E88X
READ	TCGA-DY-A1DG-01	ZFAT	ENST00000520727.1,ENST00000377838.3,ENST00000523399.1,ENST00000523243.1,ENST00000518408.1,ENST00000520214.1,ENST00000523924.1	chr8	135490635:135490964:135521861:135521992:135524717:135524844,	135521862	135521992	135521987	135521987	Nonsense_Mutation	G	A	p.R1061X
READ	TCGA-F5-6814-01	ZKSCAN3	ENST00000377255.3	chr6	28318048:28318165:28327301:28327765:28329100:28329248,	28327302	28327765	28327454	28327454	Nonsense_Mutation	G	T	p.E31X
READ	TCGA-EI-6917-01	ZMPSTE24	ENST00000372759.3	chr1	40737565:40737707:40747014:40747199:40751596:40751701,	40747015	40747199	40747179	40747179	Nonsense_Mutation	G	T	p.E312X
READ	TCGA-EI-6917-01	ZNF148	ENST00000492394.1,ENST00000360647.4	chr3	125006946:125007072:125032151:125032500:125042152:125042288,	125032152	125032500	125032337	125032337	Nonsense_Mutation	G	A	p.R50X
READ	TCGA-F5-6814-01	ZNF277	ENST00000457808.1,ENST00000361946.4,ENST00000361822.3,ENST00000425229.1	chr7	111967771:111967882:111970138:111970271:111976158:111976219,	111970139	111970271	111970239	111970239	Nonsense_Mutation	G	T	p.E257X
READ	TCGA-F5-6814-01	ZNF420	ENST00000587029.1,ENST00000337995.3,ENST00000304239.7,ENST00000589245.1	chr19	37579940:37580029:37581896:37582023:37586932:37587017,37579940:37580029:37581896:37582023:37618029:37618041,	37581897	37582023	37581901	37581901	Nonsense_Mutation	T	G	p.L5X
READ	TCGA-EI-6917-01	ZNF429	ENST00000358491.4,ENST00000597078.1	chr19	21688442:21688576:21712459:21712586:21713390:21713486,	21712460	21712586	21712490	21712490	Nonsense_Mutation	G	T	p.E12X
READ	TCGA-EI-6917-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806582	22806582	Nonsense_Mutation	C	A	p.E434X
READ	TCGA-DC-6682-01	ZNF550	ENST00000457177.1	chr19	58053207:58054611:58057824:58059361:58063994:58064090,	58057825	58059361	58058834	58058834	Nonsense_Mutation	T	A	p.K219X
READ	TCGA-DC-6158-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21299951	21299951	Nonsense_Mutation	C	T	p.Q161X
READ	TCGA-DC-6158-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300528	21300528	Nonsense_Mutation	C	G	p.S353X
READ	TCGA-DC-6158-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300696	21300696	Nonsense_Mutation	C	G	p.S409X
READ	TCGA-F5-6814-01	ZNF821	ENST00000446827.2,ENST00000568666.1,ENST00000568961.1,ENST00000565516.1,ENST00000562797.1,ENST00000563878.1,ENST00000562808.1,ENST00000566987.1,ENST00000425432.1,ENST00000313565.6,ENST00000565601.1	chr16	71894500:71894575:71895678:71895845:71898040:71898138,	71895679	71895845	71895734	71895734	Nonsense_Mutation	G	A	p.R177X
READ	TCGA-AG-A002-01	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000430352.2,ENST00000586539.1	chr17	66883476:66883647:66887629:66887737:66890313:66890451,	66887630	66887737	66887690	66887690	Nonsense_Mutation	C	T	p.W988X
READ	TCGA-AG-A002-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	66972275:66972331:66978702:66978782:66979849:66979990,	66978703	66978782	66978729	66978729	Nonsense_Mutation	G	T	p.S1565X
READ	TCGA-AG-A002-01	ABCC5	ENST00000382494.2	chr3	183703091:183703166:183705557:183705705:183706359:183706515,	183705558	183705705	183705647	183705647	Nonsense_Mutation	G	A	p.R168X
READ	TCGA-AG-A002-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89039260:89039412:89042786:89042944:89052212:89052365,	89042787	89042944	89042908	89042908	Nonsense_Mutation	C	A	p.E190X
READ	TCGA-AG-A002-01	ABI1	ENST00000376170.4,ENST00000376166.1	chr10	27044583:27044670:27047990:27048164:27054146:27054247,27040526:27040712:27047990:27048164:27054146:27054247,	27047991	27048164	27048111	27048111	Nonsense_Mutation	G	A	p.R293X
READ	TCGA-AG-A002-01	ABI1	ENST00000346832.5	chr10	27044583:27044670:27047990:27048167:27052808:27052889,27044583:27044670:27047990:27048167:27054146:27054247,27040526:27040712:27047990:27048167:27054146:27054247,27040526:27040712:27047990:27048167:27052808:27052889,	27047991	27048167	27048111	27048111	Nonsense_Mutation	G	A	p.R293X
READ	TCGA-AG-A002-01	ABLIM1	ENST00000369253.2	chr10	116227939:116227975:116232735:116232891:116233637:116233715,116227939:116227975:116232735:116232891:116247716:116247752,	116232736	116232891	116232816	116232816	Nonsense_Mutation	C	A	p.E111X
READ	TCGA-AG-A002-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109677634:109677790:109678882:109679086:109680241:109680397,	109678883	109679086	109679060	109679060	Nonsense_Mutation	G	T	p.E1666X
READ	TCGA-AG-A002-01	ACAP1	ENST00000158762.3	chr17	7251624:7251794:7252313:7252486:7253263:7253279,	7252314	7252486	7252364	7252364	Nonsense_Mutation	C	T	p.R577X
READ	TCGA-AG-A002-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148657312:148657467:148672759:148672903:148674851:148674995,	148672760	148672903	148672871	148672871	Nonsense_Mutation	G	T	p.E214X
READ	TCGA-AG-A002-01	ADAM9	ENST00000481873.3	chr8	38940486:38940592:38948777:38948865:38959381:38959449,	38948778	38948865	38948860	38948860	Nonsense_Mutation	G	T	p.E765X
READ	TCGA-AG-A002-01	AGBL2	ENST00000528244.1,ENST00000298861.4,ENST00000528609.1,ENST00000525123.1	chr11	47690392:47690459:47698822:47698953:47701524:47701625,	47698823	47698953	47698868	47698868	Nonsense_Mutation	A	C	p.L701X
READ	TCGA-AG-A002-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736321	4736321	Nonsense_Mutation	C	A	p.E583X
READ	TCGA-AG-A002-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4737701	4737701	Nonsense_Mutation	C	A	p.E123X
READ	TCGA-AG-A002-01	AKNA	ENST00000312033.3,ENST00000374088.3,ENST00000307564.4	chr9	117136372:117136447:117138745:117139812:117143339:117143726,	117138746	117139812	117139240	117139240	Nonsense_Mutation	C	A	p.E283X
READ	TCGA-AG-A002-01	ALDH1L2	ENST00000549335.1,ENST00000552270.1,ENST00000258494.9	chr12	105428077:105428176:105431880:105431980:105433490:105433584,	105431881	105431980	105431886	105431886	Nonsense_Mutation	G	A	p.R714X
READ	TCGA-AG-3602-01	ALDH8A1	ENST00000265605.2,ENST00000367845.2	chr6	135253913:135254170:135260403:135260553:135263546:135263702,	135260404	135260553	135260508	135260508	Nonsense_Mutation	C	T	p.W163X
READ	TCGA-AG-A002-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257187	9257187	Nonsense_Mutation	C	T	p.R1285X
READ	TCGA-AG-A002-01	ANKRD16	ENST00000380094.5,ENST00000380092.4	chr10	5920084:5920250:5922260:5922339:5924968:5925130,	5922261	5922339	5922267	5922267	Nonsense_Mutation	G	A	p.R308X
READ	TCGA-AG-A002-01	ANKRD17	ENST00000558247.1,ENST00000561029.1	chr4	74000833:74000982:74005247:74006000:74007457:74007509,74000833:74000979:74005247:74006000:74007457:74007509,	74005248	74006000	74005398	74005398	Nonsense_Mutation	C	A	p.E979X
READ	TCGA-AG-A002-01	AP2B1	ENST00000592191.1,ENST00000262325.7,ENST00000589344.1,ENST00000312678.8,ENST00000537622.2,ENST00000592545.1,ENST00000545922.2,ENST00000538556.1	chr17	33954403:33954524:33954649:33954745:33963359:33963475,	33954650	33954745	33954701	33954701	Nonsense_Mutation	C	T	p.R371X
READ	TCGA-AG-3598-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128143	112128143	Nonsense_Mutation	C	T	p.R216X
READ	TCGA-AG-3598-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128191	112128191	Nonsense_Mutation	C	T	p.R232X
READ	TCGA-AG-A002-01	APOL2	ENST00000529194.1,ENST00000451256.2,ENST00000249066.6,ENST00000454728.1,ENST00000358502.5	chr22	36624240:36624326:36627385:36627512:36629198:36629287,	36627386	36627512	36627418	36627418	Nonsense_Mutation	C	T	p.W35X
READ	TCGA-AG-A002-01	APPL1	ENST00000288266.3	chr3	57301769:57301820:57302425:57302515:57303568:57307496,	57302426	57302515	57302510	57302510	Nonsense_Mutation	G	T	p.E660X
READ	TCGA-AG-A002-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000551662.1,ENST00000258530.3	chr12	105591541:105591658:105593150:105593309:105597480:105597563,105591542:105591731:105593150:105593309:105597480:105597563,	105593151	105593309	105593257	105593257	Nonsense_Mutation	C	A	p.E210X
READ	TCGA-AG-A002-01	APPL2	ENST00000547439.1	chr12	105591542:105591731:105593150:105593302:105597480:105597563,	105593151	105593302	105593257	105593257	Nonsense_Mutation	C	A	p.E210X
READ	TCGA-AG-A002-01	ARAP2	ENST00000303965.4	chr4	36118682:36118757:36121271:36121340:36122800:36122948,	36121272	36121340	36121307	36121307	Nonsense_Mutation	C	A	p.E1310X
READ	TCGA-AG-A002-01	ARFGAP2	ENST00000395449.3,ENST00000524782.1,ENST00000533243.1,ENST00000419701.2,ENST00000426335.2,ENST00000529455.1,ENST00000527927.1,ENST00000319543.6,ENST00000532478.1,ENST00000532438.1	chr11	47189678:47189802:47192976:47193108:47193214:47193351,	47192977	47193108	47193020	47193020	Nonsense_Mutation	G	A	p.R272X
READ	TCGA-AG-A002-01	ARFGEF2	ENST00000371917.4	chr20	47641849:47642018:47645066:47645205:47648585:47648703,	47645067	47645205	47645144	47645144	Nonsense_Mutation	C	T	p.R1668X
READ	TCGA-AG-3605-01	ARID4A	ENST00000395168.3,ENST00000445108.1,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58790202:58790335:58794954:58795034:58796245:58796322,	58794955	58795034	58795000	58795000	Nonsense_Mutation	C	T	p.Q210X
READ	TCGA-AG-A002-01	ARMC3	ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23248330:23248503:23250812:23251007:23257234:23257271,	23250813	23251007	23250825	23250825	Nonsense_Mutation	C	T	p.R184X
READ	TCGA-AG-A002-01	ARNT	ENST00000497108.2,ENST00000505755.1	chr1	150808899:150808969:150811916:150812130:150818738:150818783,	150811917	150812130	150812072	150812072	Nonsense_Mutation	C	A	p.E96X
READ	TCGA-AG-A002-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155340294:155340441:155340567:155340774:155348071:155348180,	155340568	155340774	155340671	155340671	Nonsense_Mutation	G	A	p.R2146X
READ	TCGA-AG-A002-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743298	130743298	Nonsense_Mutation	G	A	p.R285X
READ	TCGA-AG-A002-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743678	130743678	Nonsense_Mutation	G	T	p.S158X
READ	TCGA-AG-A002-01	ATG5	ENST00000369076.3,ENST00000369070.1,ENST00000343245.3	chr6	106696024:106696119:106727535:106727698:106740902:106740981,	106727536	106727698	106727584	106727584	Nonsense_Mutation	C	A	p.E144X
READ	TCGA-AG-A002-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55313660:55315944:55317598:55317729:55319265:55319404,	55317599	55317729	55317640	55317640	Nonsense_Mutation	G	A	p.R1164X
READ	TCGA-AG-A002-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645739	215645739	Nonsense_Mutation	C	A	p.E287X
READ	TCGA-AG-A002-01	BECN1	ENST00000543382.2,ENST00000361523.4,ENST00000438274.3,ENST00000586589.1,ENST00000590099.1	chr17	40966616:40966691:40967925:40968072:40970238:40970433,	40967926	40968072	40968062	40968062	Nonsense_Mutation	C	A	p.E232X
READ	TCGA-AG-A002-01	BHMT2	ENST00000521567.1	chr5	78376509:78376701:78378631:78378779:78379014:78379021,78375191:78375283:78378631:78378779:78379014:78379021,	78378632	78378779	78378752	78378752	Nonsense_Mutation	G	T	p.E127X
READ	TCGA-AG-A002-01	BPIFC	ENST00000300399.3,ENST00000397452.1	chr22	32841621:32841685:32841827:32841983:32843198:32843327,	32841828	32841983	32841835	32841835	Nonsense_Mutation	C	A	p.E175X
READ	TCGA-AG-A002-01	BRCA2	ENST00000544455.1,ENST00000380152.3	chr13	32890558:32890664:32893213:32893462:32899212:32899321,	32893214	32893462	32893291	32893291	Nonsense_Mutation	G	T	p.E49X
READ	TCGA-AG-A002-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310477	103310477	Nonsense_Mutation	C	T	p.R524X
READ	TCGA-AG-A002-01	C12orf29	ENST00000548757.2,ENST00000453037.3,ENST00000550333.1,ENST00000356891.3,ENST00000547468.1	chr12	88437375:88437492:88439358:88439556:88440583:88440726,	88439359	88439556	88439529	88439529	Nonsense_Mutation	G	T	p.G198X
READ	TCGA-AG-A002-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16612252	16612252	Nonsense_Mutation	G	T	p.E217X
READ	TCGA-AG-A002-01	C1orf127	ENST00000377008.4,ENST00000418570.2	chr1	11015046:11015243:11017641:11017810:11018770:11018809,	11017642	11017810	11017789	11017789	Nonsense_Mutation	G	A	p.R193X
READ	TCGA-AG-A002-01	CAMK1D	ENST00000378845.1	chr10	12391731:12391909:12595223:12595355:12708734:12708809,	12595224	12595355	12595255	12595255	Nonsense_Mutation	G	T	p.E42X
READ	TCGA-AG-A002-01	CAPZA2	ENST00000417431.1,ENST00000490693.1,ENST00000458284.2,ENST00000464669.1,ENST00000361183.3,ENST00000426421.1	chr7	116502667:116502704:116528180:116528244:116533047:116533099,	116528181	116528244	116528223	116528223	Nonsense_Mutation	G	T	p.E28X
READ	TCGA-AG-A002-01	CAPZA2	ENST00000458284.2,ENST00000361183.3,ENST00000426421.1	chr7	116552122:116552194:116556113:116556176:116557780:116557814,	116556114	116556176	116556135	116556135	Nonsense_Mutation	G	T	p.E227X
READ	TCGA-AG-A002-01	CCDC69	ENST00000355417.2,ENST00000521308.1,ENST00000518189.1	chr5	150566946:150567020:150578557:150578645:150581142:150581249,	150578558	150578645	150578618	150578618	Nonsense_Mutation	G	A	p.R87X
READ	TCGA-AG-A002-01	CD53	ENST00000271324.5	chr1	111437581:111437677:111439274:111439355:111440430:111440514,	111439275	111439355	111439344	111439344	Nonsense_Mutation	C	T	p.R165X
READ	TCGA-AG-A002-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000527547.1,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45199917:45199966:45201251:45201326:45206758:45206887,	45201252	45201326	45201281	45201281	Nonsense_Mutation	C	A	p.E742X
READ	TCGA-AG-A002-01	CEP104	ENST00000494653.1,ENST00000378230.3,ENST00000378223.3	chr1	3764038:3764177:3765171:3765345:3768858:3768985,	3765172	3765345	3765182	3765182	Nonsense_Mutation	G	A	p.R93X
READ	TCGA-AG-A002-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34064273:34064420:34065695:34065926:34067055:34067249,	34065696	34065926	34065891	34065891	Nonsense_Mutation	G	T	p.E687X
READ	TCGA-AG-A002-01	CEP76	ENST00000262127.2,ENST00000423709.2,ENST00000590143.1	chr18	12686372:12686449:12691357:12691486:12695252:12695318,	12691358	12691486	12691450	12691450	Nonsense_Mutation	G	A	p.R281X
READ	TCGA-AG-A01L-01	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000591698.1	chr19	33369914:33370284:33372749:33372919:33378657:33378747,	33372750	33372919	33372823	33372823	Nonsense_Mutation	G	A	p.Q688X
READ	TCGA-AG-A002-01	CHRDL2	ENST00000263671.5,ENST00000528789.1,ENST00000376332.3,ENST00000534159.1	chr11	74424430:74424524:74429764:74429877:74441851:74442198,	74429765	74429877	74429789	74429789	Nonsense_Mutation	G	T	p.Y57X
READ	TCGA-AG-A002-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165552275	165552275	Nonsense_Mutation	C	A	p.E581X
READ	TCGA-AG-A002-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165552275	165552275	Nonsense_Mutation	C	A	p.E581X
READ	TCGA-AG-A002-01	COG5	ENST00000393603.2,ENST00000347053.3,ENST00000297135.3,ENST00000475638.2	chr7	107013039:107013205:107052946:107053077:107167681:107167802,	107052947	107053077	107053042	107053042	Nonsense_Mutation	C	A	p.E223X
READ	TCGA-AG-A002-01	COL27A1	ENST00000356083.3,ENST00000494090.2	chr9	117008145:117008190:117012894:117012948:117014872:117014926,	117012895	117012948	117012943	117012943	Nonsense_Mutation	G	T	p.E1010X
READ	TCGA-AG-A002-01	COL6A3	ENST00000353578.4,ENST00000409809.1,ENST00000392004.3	chr2	238289557:238290142:238296224:238296827:238303229:238303307,238289779:238290142:238296224:238296827:238305369:238305460,	238296225	238296827	238296672	238296672	Nonsense_Mutation	C	A	p.E289X
READ	TCGA-AG-A002-01	CPNE3	ENST00000523072.1,ENST00000521271.1,ENST00000198765.4	chr8	87543382:87543457:87544736:87544808:87549790:87549874,	87544737	87544808	87544749	87544749	Nonsense_Mutation	G	T	p.E134X
READ	TCGA-AG-A002-01	CRISPLD2	ENST00000567845.1	chr16	84888334:84888435:84900505:84900646:84902456:84902517,	84900506	84900646	84900571	84900571	Nonsense_Mutation	G	T	p.E260X
READ	TCGA-AG-A002-01	CRISPLD2	ENST00000563066.1,ENST00000262424.5,ENST00000569262.1,ENST00000564567.1	chr16	84888334:84888435:84900502:84900646:84902456:84902517,	84900503	84900646	84900571	84900571	Nonsense_Mutation	G	T	p.E260X
READ	TCGA-AG-A002-01	CRLF3	ENST00000583527.1	chr17	29100424:29100515:29111324:29111461:29112936:29113011,	29111325	29111461	29111438	29111438	Nonsense_Mutation	C	A	p.E366X
READ	TCGA-AG-A002-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107300048	107300048	Nonsense_Mutation	C	A	p.E304X
READ	TCGA-AG-A011-01	CYP11B1	ENST00000517471.1,ENST00000377675.3,ENST00000292427.4	chr8	143957127:143957294:143957656:143957811:143958097:143958301,	143957657	143957811	143957761	143957761	Nonsense_Mutation	G	A	p.Q284X
READ	TCGA-AG-A002-01	DDX24	ENST00000555054.1,ENST00000544005.1,ENST00000330836.5	chr14	94519343:94519473:94521341:94521530:94524167:94524243,	94521342	94521530	94521491	94521491	Nonsense_Mutation	G	A	p.R677X
READ	TCGA-AG-A002-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32459368:32459512:32466287:32466439:32467759:32467930,	32466288	32466439	32466353	32466353	Nonsense_Mutation	C	A	p.E758X
READ	TCGA-AG-A002-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54581120:54581244:54581523:54581689:54585097:54585256,	54581524	54581689	54581678	54581678	Nonsense_Mutation	C	A	p.E360X
READ	TCGA-AG-A002-01	DHX35	ENST00000373325.2,ENST00000484417.1,ENST00000252011.3,ENST00000373323.4	chr20	37631414:37631511:37632391:37632550:37634788:37634999,	37632392	37632550	37632401	37632401	Nonsense_Mutation	G	T	p.E257X
READ	TCGA-AG-A002-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38830055:38830234:38831648:38831836:38834366:38834453,	38831649	38831836	38831813	38831813	Nonsense_Mutation	G	T	p.E2159X
READ	TCGA-AG-A002-01	DNMT3A	ENST00000482935.1,ENST00000402667.1,ENST00000321117.5,ENST00000466601.1,ENST00000264709.3,ENST00000380746.4	chr2	25459842:25459874:25461998:25462084:25463170:25463319,	25461999	25462084	25462057	25462057	Nonsense_Mutation	C	A	p.E784X
READ	TCGA-AG-A002-01	DOCK7	ENST00000340370.5	chr1	63009326:63009416:63018402:63018572:63021495:63021605,	63018403	63018572	63018423	63018423	Nonsense_Mutation	G	A	p.R916X
READ	TCGA-AG-3583-01	EBF3	ENST00000355311.5,ENST00000368648.3	chr10	131641400:131641466:131646655:131646744:131665404:131665531,	131646656	131646744	131646712	131646712	Nonsense_Mutation	G	A	p.Q349X
READ	TCGA-AG-A002-01	EFCAB6	ENST00000404038.1,ENST00000262726.7,ENST00000396231.2	chr22	44079626:44079735:44083350:44083461:44107354:44107503,	44083351	44083461	44083429	44083429	Nonsense_Mutation	C	T	p.W355X
READ	TCGA-AG-A002-01	EFCAB6	ENST00000404038.1,ENST00000356087.4,ENST00000262726.7,ENST00000358439.4,ENST00000396231.2	chr22	44127578:44127691:44131736:44131873:44151645:44151712,	44131737	44131873	44131804	44131804	Nonsense_Mutation	G	A	p.R193X
READ	TCGA-AG-A002-01	EIF3F	ENST00000528653.1	chr11	8008902:8009263:8013327:8013518:8013630:8013710,	8013328	8013518	8013365	8013365	Nonsense_Mutation	C	A	p.C134X
READ	TCGA-AG-A002-01	EIF3F	ENST00000537635.1,ENST00000309828.4,ENST00000533626.1	chr11	8008902:8009263:8013327:8013398:8013630:8013710,	8013328	8013398	8013365	8013365	Nonsense_Mutation	C	A	p.C134X
READ	TCGA-AG-A002-01	EIF4G3	ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21205815:21206013:21212693:21212864:21220009:21220129,	21212694	21212864	21212819	21212819	Nonsense_Mutation	C	A	p.E711X
READ	TCGA-AG-A002-01	ENAH	ENST00000366844.3,ENST00000284563.6,ENST00000498108.1,ENST00000358675.2,ENST00000483952.1,ENST00000366843.2	chr1	225685335:225685514:225686048:225686106:225688693:225688772,	225686049	225686106	225686082	225686082	Nonsense_Mutation	C	A	p.E569X
READ	TCGA-AG-3608-01	ENTPD5	ENST00000557325.1,ENST00000334696.6	chr14	74438554:74438611:74439586:74439727:74440579:74440681,	74439587	74439727	74439698	74439698	Nonsense_Mutation	C	A	p.E306X
READ	TCGA-AG-A002-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000493793.1	chr1	51869100:51869204:51871576:51871780:51873806:51874004,	51871577	51871780	51871633	51871633	Nonsense_Mutation	C	A	p.E227X
READ	TCGA-AG-A002-01	ERAP1	ENST00000296754.3,ENST00000443439.2	chr5	96132949:96133012:96136564:96136703:96139105:96139530,	96136565	96136703	96136649	96136649	Nonsense_Mutation	G	T	p.C193X
READ	TCGA-AG-A002-01	ERC1	ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1100463:1100488:1136913:1137738:1192329:1192746,1100432:1100653:1136913:1137738:1192329:1192746,	1136914	1137738	1137559	1137559	Nonsense_Mutation	G	T	p.E164X
READ	TCGA-AG-A002-01	ERC1	ENST00000592048.1	chr12	1100428:1100653:1137504:1137738:1192329:1192746,	1137505	1137738	1137559	1137559	Nonsense_Mutation	G	T	p.E164X
READ	TCGA-AG-A002-01	FAM126A	ENST00000409923.1,ENST00000432176.2,ENST00000440481.1	chr7	22999874:23000034:23000853:23000941:23004033:23004150,	23000854	23000941	23000877	23000877	Nonsense_Mutation	C	A	p.E270X
READ	TCGA-AG-A002-01	FAM13B	ENST00000425075.2	chr5	137347578:137347634:137353990:137354203:137356719:137356886,	137353991	137354203	137354051	137354051	Nonsense_Mutation	C	A	p.E104X
READ	TCGA-AG-A002-01	FAM49B	ENST00000401979.2,ENST00000519824.2,ENST00000517801.1,ENST00000519540.1,ENST00000523288.1,ENST00000522250.1,ENST00000522746.1,ENST00000517654.1,ENST00000523509.1,ENST00000519110.1	chr8	130866511:130866589:130867856:130867993:130874474:130874572,	130867857	130867993	130867925	130867925	Nonsense_Mutation	G	A	p.R124X
READ	TCGA-AG-A002-01	FASTKD2	ENST00000236980.6,ENST00000402774.3,ENST00000403094.3,ENST00000487777.1	chr2	207636904:207637044:207638948:207639121:207651456:207651623,	207638949	207639121	207638988	207638988	Nonsense_Mutation	C	T	p.R432X
READ	TCGA-AG-A002-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150923556	150923556	Nonsense_Mutation	C	A	p.E2378X
READ	TCGA-AG-A002-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99321600:99322317:99323290:99323603:99328428:99328500,	99323291	99323603	99323498	99323498	Nonsense_Mutation	C	A	p.E499X
READ	TCGA-AG-A002-01	FCHSD2	ENST00000409314.1,ENST00000311172.7,ENST00000458644.2,ENST00000409418.4	chr11	72552498:72552628:72553665:72553886:72554195:72554373,	72553666	72553886	72553794	72553794	Nonsense_Mutation	C	A	p.E600X
READ	TCGA-AG-A002-01	FGD6	ENST00000551521.1,ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95486603:95486621:95488367:95488470:95498782:95498862,	95488368	95488470	95488460	95488460	Nonsense_Mutation	C	A	p.E1170X
READ	TCGA-AG-A002-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95602980	95602980	Nonsense_Mutation	C	A	p.E694X
READ	TCGA-AG-A002-01	FOXM1	ENST00000545049.1,ENST00000361953.3,ENST00000342628.2,ENST00000359843.3,ENST00000537018.1	chr12	2977728:2977920:2981261:2981413:2983142:2983303,	2981262	2981413	2981354	2981354	Nonsense_Mutation	G	A	p.R187X
READ	TCGA-AG-A002-01	GAPVD1	ENST00000394105.2	chr9	128094788:128094908:128097450:128097531:128099296:128099374,	128097451	128097531	128097501	128097501	Nonsense_Mutation	G	T	p.E827X
READ	TCGA-AG-A002-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088435	109088435	Nonsense_Mutation	G	T	p.E884X
READ	TCGA-AG-A002-01	GCNT2	ENST00000495262.1	chr6	10527706:10527893:10528863:10530069:10621583:10621655,	10528864	10530069	10529382	10529382	Nonsense_Mutation	C	T	p.R80X
READ	TCGA-AG-A014-01	GLT8D2	ENST00000548660.1,ENST00000550816.1	chr12	104408790:104408883:104413407:104413454:104415134:104415269,104408790:104408883:104413407:104413454:104443672:104443799,	104413408	104413454	104413414	104413414	Nonsense_Mutation	G	A	p.R5X
READ	TCGA-AG-A002-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368058	37368058	Nonsense_Mutation	G	T	p.E1583X
READ	TCGA-AG-A002-01	GPR161	ENST00000361697.2,ENST00000537209.1,ENST00000271357.5,ENST00000367835.1,ENST00000367838.1,ENST00000493800.1	chr1	168059801:168059906:168065745:168066470:168073714:168074132,	168065746	168066470	168065845	168065845	Nonsense_Mutation	C	A	p.E334X
READ	TCGA-AG-A002-01	GTF2F2	ENST00000340473.6	chr13	45725821:45725966:45781558:45781640:45827005:45827105,	45781559	45781640	45781630	45781630	Nonsense_Mutation	C	T	p.R126X
READ	TCGA-AG-A002-01	GYS1	ENST00000540532.1	chr19	49484786:49484893:49485511:49485632:49488717:49488731,	49485512	49485632	49485577	49485577	Nonsense_Mutation	C	A	p.E333X
READ	TCGA-AG-A002-01	HADHA	ENST00000380649.3	chr2	26426930:26427065:26432648:26432758:26435438:26435495,	26432649	26432758	26432731	26432731	Nonsense_Mutation	C	A	p.E335X
READ	TCGA-AG-A002-01	HELQ	ENST00000508591.1,ENST00000295488.3,ENST00000510985.1	chr4	84339245:84339359:84342715:84342889:84347146:84347245,	84342716	84342889	84342784	84342784	Nonsense_Mutation	G	A	p.R961X
READ	TCGA-AG-A002-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000367009.1,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210761241:210761443:210796869:210797014:210847629:210847751,	210796870	210797014	210796900	210796900	Nonsense_Mutation	C	T	p.R289X
READ	TCGA-AG-A002-01	HIF1A	ENST00000394997.1	chr14	62162494:62162557:62187096:62187290:62188226:62188372,	62187097	62187290	62187161	62187161	Nonsense_Mutation	G	T	p.E57X
READ	TCGA-AG-A002-01	HIF1A	ENST00000337138.4,ENST00000323441.6	chr14	62162494:62162557:62187099:62187290:62188226:62188372,	62187100	62187290	62187161	62187161	Nonsense_Mutation	G	T	p.E57X
READ	TCGA-AG-A002-01	HIP1	ENST00000336926.6,ENST00000434438.2	chr7	75167471:75167545:75168642:75168751:75171237:75171299,	75168643	75168751	75168733	75168733	Nonsense_Mutation	C	A	p.E940X
READ	TCGA-AG-A002-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186094735:186094926:186097209:186097423:186099097:186099232,	186097210	186097423	186097328	186097328	Nonsense_Mutation	C	A	p.S4270X
READ	TCGA-AG-A002-01	HTATIP2	ENST00000443524.2,ENST00000419348.2,ENST00000421577.2,ENST00000451739.2	chr11	20385782:20385978:20388719:20388827:20398125:20398263,	20388720	20388827	20388726	20388726	Nonsense_Mutation	G	T	p.E68X
READ	TCGA-AG-A002-01	IQCK	ENST00000320394.6,ENST00000561839.1,ENST00000568300.2,ENST00000308214.9,ENST00000564955.1,ENST00000433597.2,ENST00000562762.1	chr16	19775356:19775434:19838347:19838459:19867808:19867883,19800159:19800244:19838347:19838459:19867808:19867883,	19838348	19838459	19838450	19838450	Nonsense_Mutation	G	T	p.E265X
READ	TCGA-AG-A002-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3,ENST00000514001.1,ENST00000505766.1	chr5	75960850:75961000:75964505:75964669:75967583:75967609,	75964506	75964669	75964614	75964614	Nonsense_Mutation	C	T	p.R930X
READ	TCGA-AG-A002-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3,ENST00000488166.1	chr21	35138178:35138316:35140016:35140132:35144364:35144586,	35140017	35140132	35140024	35140024	Nonsense_Mutation	C	T	p.R312X
READ	TCGA-AG-A002-01	ITSN2	ENST00000361999.3	chr2	24494673:24494810:24498581:24498718:24509080:24509220,	24498582	24498718	24498709	24498709	Nonsense_Mutation	C	A	p.E652X
READ	TCGA-AG-A002-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15410454:15410596:15452236:15452406:15468772:15468949,	15452237	15452406	15452403	15452403	Nonsense_Mutation	C	T	p.R164X
READ	TCGA-AG-A002-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76729777:76729859:76732264:76732397:76735156:76735212,	76732265	76732397	76732382	76732382	Nonsense_Mutation	T	G	p.L349X
READ	TCGA-AG-A002-01	KCNH1	ENST00000367007.4	chr1	210977308:210977508:211092981:211093411:211192205:211192598,	211092982	211093411	211093327	211093327	Nonsense_Mutation	C	A	p.E346X
READ	TCGA-AG-A002-01	KCNK2	ENST00000474771.1,ENST00000467031.1	chr1	215297975:215298093:215342541:215342702:215368295:215368400,	215342542	215342702	215342568	215342568	Nonsense_Mutation	G	T	p.E168X
READ	TCGA-AG-A002-01	KCTD3	ENST00000259154.4,ENST00000448333.1	chr1	215751012:215751071:215751343:215751424:215752342:215752480,	215751344	215751424	215751367	215751367	Nonsense_Mutation	G	T	p.E114X
READ	TCGA-AG-A002-01	KDSR	ENST00000326575.5,ENST00000406396.3,ENST00000589530.1,ENST00000592327.1	chr18	61022730:61022796:61026968:61027025:61030011:61030101,	61026969	61027025	61027001	61027001	Nonsense_Mutation	C	A	p.E75X
READ	TCGA-AG-A002-01	KIAA1324L	ENST00000490995.1,ENST00000474609.1,ENST00000394714.2,ENST00000297222.6,ENST00000450689.2,ENST00000423294.1,ENST00000416314.1	chr7	86542341:86542520:86544038:86544176:86547757:86547860,	86544039	86544176	86544125	86544125	Nonsense_Mutation	C	A	p.E382X
READ	TCGA-AG-A002-01	KIF5B	ENST00000302418.4	chr10	32306979:32307084:32307243:32307315:32307429:32307490,	32307244	32307315	32307309	32307309	Nonsense_Mutation	C	A	p.E792X
READ	TCGA-AG-A002-01	KLHL18	ENST00000455924.2,ENST00000442272.1	chr3	47324448:47324584:47364057:47364198:47371440:47371639,	47364058	47364198	47364191	47364191	Nonsense_Mutation	C	T	p.R132X
READ	TCGA-AG-A002-01	KLKB1	ENST00000511608.1,ENST00000264690.6,ENST00000511406.1,ENST00000428196.1,ENST00000414291.1,ENST00000446598.2,ENST00000513864.1	chr4	187153280:187153443:187155105:187155212:187157934:187158041,	187155106	187155212	187155158	187155158	Nonsense_Mutation	C	T	p.R92X
READ	TCGA-AG-A002-01	LAMA3	ENST00000586751.1,ENST00000313654.9,ENST00000269217.6,ENST00000588770.1	chr18	21479251:21479419:21481090:21481287:21482972:21483089,	21481091	21481287	21481258	21481258	Nonsense_Mutation	G	T	p.E393X
READ	TCGA-AG-A002-01	LARP1B	ENST00000264584.5,ENST00000508819.1	chr4	128996088:128996148:128998942:128999117:129012155:129012299,	128998943	128999117	128999036	128999036	Nonsense_Mutation	G	T	p.E46X
READ	TCGA-AG-A002-01	LARP4B	ENST00000448368.1,ENST00000316157.3	chr10	860885:861010:863664:863829:866739:866785,	863665	863829	863670	863670	Nonsense_Mutation	C	A	p.E564X
READ	TCGA-AG-A011-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890957	890957	Nonsense_Mutation	G	A	p.R157X
READ	TCGA-AG-A002-01	LDB2	ENST00000506732.1,ENST00000502640.1,ENST00000441778.2,ENST00000304523.5	chr4	16597325:16597498:16760780:16760883:16899976:16900001,	16760781	16760883	16760787	16760787	Nonsense_Mutation	G	A	p.R77X
READ	TCGA-AG-A002-01	LIMK2	ENST00000406516.1,ENST00000340552.4,ENST00000331728.4,ENST00000444929.2,ENST00000333611.4	chr22	31661931:31662118:31662969:31663056:31663761:31663893,	31662970	31663056	31663018	31663018	Nonsense_Mutation	C	T	p.R364X
READ	TCGA-AG-A002-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96314892	96314892	Nonsense_Mutation	G	T	p.E24X
READ	TCGA-AG-A002-01	LNX1	ENST00000263925.7,ENST00000306888.2	chr4	54342919:54343148:54344731:54344909:54347886:54348021,	54344732	54344909	54344807	54344807	Nonsense_Mutation	C	A	p.E530X
READ	TCGA-AG-A002-01	LRIG1	ENST00000383703.3	chr3	66501982:66502057:66512861:66512933:66550613:66551356,	66512862	66512933	66512866	66512866	Nonsense_Mutation	C	A	p.E96X
READ	TCGA-AG-A002-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85492132:85492326:85492644:85492772:85497781:85497855,	85492645	85492772	85492678	85492678	Nonsense_Mutation	G	T	p.E1039X
READ	TCGA-AG-A002-01	LTBP1	ENST00000498013.1,ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000415140.2,ENST00000404816.2,ENST00000272273.5,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33525517:33525640:33526588:33526711:33534500:33534549,	33526589	33526711	33526597	33526597	Nonsense_Mutation	G	T	p.E797X
READ	TCGA-AG-3580-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000475314.1,ENST00000374332.4	chr1	26104595:26104815:26107430:26107603:26109075:26109191,	26107431	26107603	26107553	26107553	Nonsense_Mutation	C	T	p.R534X
READ	TCGA-AG-A002-01	MCM3	ENST00000596288.1,ENST00000419835.2,ENST00000229854.7	chr6	52138539:52138714:52141065:52141274:52141864:52141996,	52141066	52141274	52141212	52141212	Nonsense_Mutation	C	A	p.E410X
READ	TCGA-AG-A002-01	METTL5	ENST00000442181.1	chr2	170668274:170668368:170668966:170669034:170671986:170672038,	170668967	170669034	170669011	170669011	Nonsense_Mutation	G	A	p.R183X
READ	TCGA-AG-A002-01	METTL5	ENST00000392640.2,ENST00000409965.1,ENST00000260953.5,ENST00000409340.1,ENST00000537825.1	chr2	170668274:170668368:170668966:170669016:170671986:170672038,	170668967	170669016	170669011	170669011	Nonsense_Mutation	G	A	p.R183X
READ	TCGA-AG-A002-01	MMP10	ENST00000279441.4	chr11	102645918:102646052:102647010:102647155:102647342:102647507,	102647011	102647155	102647132	102647132	Nonsense_Mutation	C	A	p.E271X
READ	TCGA-AG-A011-01	MON2	ENST00000393629.2,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000393632.2	chr12	62936876:62936978:62938677:62938788:62940676:62940852,	62938678	62938788	62938714	62938714	Nonsense_Mutation	G	T	p.G835X
READ	TCGA-AG-A011-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000606321.1,ENST00000302349.5	chr12	123648496:123648637:123649848:123650024:123651201:123651336,	123649849	123650024	123649915	123649915	Nonsense_Mutation	C	A	p.E749X
READ	TCGA-AG-A002-01	MRPL1	ENST00000315567.8,ENST00000511521.1	chr4	78792897:78793009:78804395:78804654:78806409:78806472,	78804396	78804654	78804460	78804460	Nonsense_Mutation	G	T	p.E70X
READ	TCGA-AG-A002-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026932	48026932	Nonsense_Mutation	G	T	p.E604X
READ	TCGA-AG-A002-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026932	48026932	Nonsense_Mutation	G	T	p.E604X
READ	TCGA-AG-A002-01	MTF2	ENST00000545708.1,ENST00000471953.1,ENST00000476037.1,ENST00000540243.1,ENST00000370298.4,ENST00000467953.1,ENST00000487263.1	chr1	93592788:93592856:93594834:93595005:93599259:93599297,	93594835	93595005	93594851	93594851	Nonsense_Mutation	G	T	p.E336X
READ	TCGA-AG-3578-01	MYBPHL	ENST00000357155.1	chr1	109837732:109837919:109838855:109838992:109839404:109839564,	109838856	109838992	109838960	109838960	Nonsense_Mutation	G	A	p.R255X
READ	TCGA-AG-A002-01	MYPN	ENST00000354393.2,ENST00000358913.5	chr10	69918242:69918384:69921485:69921509:69925458:69925575,	69921486	69921509	69921491	69921491	Nonsense_Mutation	C	T	p.R489X
READ	TCGA-AG-A002-01	NAE1	ENST00000569388.1	chr16	66857183:66857209:66857431:66857503:66858757:66858788,66857183:66857209:66857431:66857503:66860425:66860486,	66857432	66857503	66857470	66857470	Nonsense_Mutation	C	A	p.E95X
READ	TCGA-AG-A002-01	NAGLU	ENST00000225927.2	chr17	40690687:40690773:40692967:40693224:40695045:40695338,	40692968	40693224	40693095	40693095	Nonsense_Mutation	G	T	p.E298X
READ	TCGA-AG-A002-01	NDUFV3	ENST00000354250.2	chr21	44313430:44313491:44317036:44317157:44328973:44329215,44313430:44313491:44317036:44317157:44323291:44324041,	44317037	44317157	44317064	44317064	Nonsense_Mutation	C	T	p.R26X
READ	TCGA-AG-A002-01	NEK5	ENST00000355568.4,ENST00000465811.3	chr13	52678633:52678688:52682453:52682540:52684475:52684546,	52682454	52682540	52682524	52682524	Nonsense_Mutation	G	A	p.R162X
READ	TCGA-AG-A002-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224741	51224741	Nonsense_Mutation	G	A	p.R1003X
READ	TCGA-AG-A002-01	NIT2	ENST00000465368.1	chr3	100059916:100060005:100064428:100065099:100067646:100067725,	100064429	100065099	100064474	100064474	Nonsense_Mutation	G	T	p.E128X
READ	TCGA-AG-A002-01	NIT2	ENST00000480073.1,ENST00000497785.1,ENST00000394140.4	chr3	100059916:100060005:100064428:100064522:100065024:100065099,	100064429	100064522	100064474	100064474	Nonsense_Mutation	G	T	p.E128X
READ	TCGA-AG-3574-01	NME7	ENST00000480478.1	chr1	169272382:169272433:169279207:169279318:169292354:169292521,169272382:169272433:169279207:169279318:169336945:169336968,	169279208	169279318	169279275	169279275	Nonsense_Mutation	C	A	p.E72X
READ	TCGA-AG-A002-01	NNMT	ENST00000535401.1	chr11	114133609:114133656:114167149:114167432:114168672:114168880,	114167150	114167432	114167342	114167342	Nonsense_Mutation	G	T	p.E22X
READ	TCGA-AG-A002-01	NOC3L	ENST00000371361.3,ENST00000371350.1,ENST00000463649.1	chr10	96112066:96112160:96112652:96112814:96114719:96114850,	96112653	96112814	96112799	96112799	Nonsense_Mutation	C	A	p.E238X
READ	TCGA-AG-A002-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28116299:28116404:28117008:28117068:28171272:28171400,	28117009	28117068	28117044	28117044	Nonsense_Mutation	C	A	p.E702X
READ	TCGA-AG-A002-01	ODF2L	ENST00000488879.2,ENST00000394731.1	chr1	86851140:86851273:86852597:86852769:86861715:86861936,86850358:86850484:86852597:86852769:86861715:86861936,	86852598	86852769	86852674	86852674	Nonsense_Mutation	C	A	p.E13X
READ	TCGA-AG-A002-01	PALMD	ENST00000263174.4,ENST00000605497.1	chr1	100127874:100127955:100133197:100133322:100152231:100152346,	100133198	100133322	100133249	100133249	Nonsense_Mutation	G	T	p.E60X
READ	TCGA-AG-A002-01	PFDN1	ENST00000510217.1	chr5	139625136:139625642:139661033:139661118:139680000:139680167,139625136:139625642:139661033:139661118:139682625:139682668,	139661034	139661118	139661036	139661036	Nonsense_Mutation	C	A	p.E95X
READ	TCGA-AG-A002-01	PHACTR3	ENST00000361300.4,ENST00000359926.3,ENST00000492611.1,ENST00000355648.4,ENST00000371015.1,ENST00000395636.2,ENST00000541461.1,ENST00000395639.4	chr20	58415427:58415485:58416449:58416590:58420243:58420320,	58416450	58416590	58416501	58416501	Nonsense_Mutation	C	T	p.R497X
READ	TCGA-AG-A002-01	PHACTR3	ENST00000361300.4,ENST00000359926.3,ENST00000492611.1,ENST00000355648.4,ENST00000371015.1,ENST00000395636.2,ENST00000541461.1,ENST00000395639.4	chr20	58416449:58416590:58420243:58420320:58422169:58422201,	58420244	58420320	58420259	58420259	Nonsense_Mutation	G	T	p.E532X
READ	TCGA-AG-A002-01	PHF3	ENST00000515594.1	chr6	64394029:64395812:64401626:64401933:64404470:64404580,64389900:64390062:64401626:64401933:64404470:64404580,	64401627	64401933	64401724	64401724	Nonsense_Mutation	G	T	p.E763X
READ	TCGA-AG-A002-01	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71822007:71822123:71822968:71823070:71825120:71825250,	71822969	71823070	71822975	71822975	Nonsense_Mutation	G	A	p.R971X
READ	TCGA-AG-3580-01	PIKFYVE	ENST00000264380.4	chr2	209204734:209204855:209207277:209207373:209209834:209209918,	209207278	209207373	209207315	209207315	Nonsense_Mutation	C	T	p.R1657X
READ	TCGA-AG-A002-01	PITPNB	ENST00000455418.3,ENST00000335272.5	chr22	28247659:28249651:28250841:28250927:28254374:28254461,	28250842	28250927	28250906	28250906	Nonsense_Mutation	G	A	p.R264X
READ	TCGA-AG-A002-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673383	75673383	Nonsense_Mutation	G	T	p.E183X
READ	TCGA-AG-A002-01	PPFIBP1	ENST00000228425.6	chr12	27829360:27829532:27829996:27830029:27832421:27832550,	27829997	27830029	27830005	27830005	Nonsense_Mutation	C	T	p.R531X
READ	TCGA-AG-A002-01	PPP3CA	ENST00000394854.3,ENST00000394853.4,ENST00000323055.6	chr4	102030110:102030235:102117072:102117273:102267895:102267953,	102117073	102117273	102117160	102117160	Nonsense_Mutation	C	A	p.E58X
READ	TCGA-AG-3575-01	PPP6R3	ENST00000525421.1,ENST00000524904.1,ENST00000393800.2,ENST00000393801.3,ENST00000534534.1,ENST00000393799.2	chr11	68341576:68341692:68343425:68343511:68350510:68350597,	68343426	68343511	68343449	68343449	Nonsense_Mutation	C	T	p.R495X
READ	TCGA-AG-A002-01	PRC1	ENST00000394249.3,ENST00000442656.2,ENST00000555455.1,ENST00000361188.5,ENST00000361919.3	chr15	91512805:91512853:91513633:91513744:91517365:91517476,	91513634	91513744	91513657	91513657	Nonsense_Mutation	G	A	p.R517X
READ	TCGA-AG-A002-01	PRDX1	ENST00000262746.1,ENST00000319248.8,ENST00000424390.1,ENST00000447184.1	chr1	45980544:45980667:45981325:45981479:45984609:45984719,	45981326	45981479	45981393	45981393	Nonsense_Mutation	C	A	p.E65X
READ	TCGA-AG-A002-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148436	44148436	Nonsense_Mutation	C	A	p.E205X
READ	TCGA-AG-A002-01	RAE1	ENST00000492498.1	chr20	55943760:55943868:55948718:55948794:55949662:55949857,	55948719	55948794	55948750	55948750	Nonsense_Mutation	C	T	p.R261X
READ	TCGA-AG-A002-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000524364.1,ENST00000520864.1,ENST00000521759.1,ENST00000389118.4,ENST00000520586.1,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1,ENST00000523665.1	chr5	170610325:170610434:170626673:170626777:170632527:170632583,	170626674	170626777	170626766	170626766	Nonsense_Mutation	G	T	p.E711X
READ	TCGA-AG-A002-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937070	48937070	Nonsense_Mutation	G	T	p.E280X
READ	TCGA-AG-A002-01	RBM39	ENST00000403542.2,ENST00000416108.1,ENST00000425184.1,ENST00000455343.1,ENST00000444878.1	chr20	34319981:34320057:34326889:34326939:34328745:34328759,34319981:34320057:34326889:34326939:34328446:34328519,	34326890	34326939	34326903	34326903	Nonsense_Mutation	C	A	p.E30X
READ	TCGA-AG-A002-01	RBPMS	ENST00000517860.1,ENST00000397323.4,ENST00000523115.1,ENST00000287771.5,ENST00000520191.1,ENST00000520161.1,ENST00000523717.1,ENST00000339877.4,ENST00000320203.4,ENST00000519647.1,ENST00000522694.1	chr8	30336845:30336893:30361802:30361953:30402010:30402073,	30361803	30361953	30361947	30361947	Nonsense_Mutation	G	T	p.E131X
READ	TCGA-AG-A002-01	RECK	ENST00000377966.3	chr9	36091160:36091340:36100327:36100540:36102090:36102227,	36100328	36100540	36100335	36100335	Nonsense_Mutation	G	T	p.E365X
READ	TCGA-AG-A002-01	REPS1	ENST00000478483.2	chr6	139226028:139226269:139229804:139229953:139232412:139232508,	139229805	139229953	139229911	139229911	Nonsense_Mutation	G	A	p.R703X
READ	TCGA-AG-A002-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000465835.1,ENST00000413697.1	chr2	100024490:100024593:100027156:100027329:100029192:100029413,	100027157	100027329	100027203	100027203	Nonsense_Mutation	C	A	p.E767X
READ	TCGA-AG-A002-01	RGS2	ENST00000235382.5	chr1	192779499:192779561:192780110:192780277:192780531:192781403,	192780111	192780277	192780207	192780207	Nonsense_Mutation	C	A	p.S124X
READ	TCGA-AG-A002-01	RPAIN	ENST00000575599.1	chr17	5329555:5329619:5331390:5331531:5335861:5335928,5329295:5329402:5331390:5331531:5335861:5335928,5326088:5326149:5331390:5331531:5335861:5335928,	5331391	5331531	5331502	5331502	Nonsense_Mutation	G	T	p.E201X
READ	TCGA-AG-A002-01	RPAIN	ENST00000573126.1	chr17	5326088:5326149:5329290:5331531:5335861:5335928,	5329291	5331531	5331502	5331502	Nonsense_Mutation	G	T	p.E201X
READ	TCGA-AG-A002-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949371	116949371	Nonsense_Mutation	G	T	p.G501X
READ	TCGA-AG-A002-01	SAMD4A	ENST00000251091.5,ENST00000392067.3,ENST00000555192.1,ENST00000357634.3,ENST00000554335.1	chr14	55231172:55231258:55236821:55236940:55241651:55241853,	55236822	55236940	55236927	55236927	Nonsense_Mutation	C	T	p.R568X
READ	TCGA-AG-A002-01	SBF2	ENST00000530741.1,ENST00000256190.8	chr11	9850902:9851043:9853770:9853967:9861044:9861150,	9853771	9853967	9853897	9853897	Nonsense_Mutation	G	A	p.R1176X
READ	TCGA-AG-A002-01	SEC31B	ENST00000370345.3,ENST00000469546.2	chr10	102259280:102259355:102262010:102262241:102265117:102265252,	102262011	102262241	102262142	102262142	Nonsense_Mutation	C	A	p.E427X
READ	TCGA-AG-A002-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100775155:100775350:100776975:100777174:100778774:100778875,	100776976	100777174	100777074	100777074	Nonsense_Mutation	G	T	p.E252X
READ	TCGA-AG-A002-01	SETD3	ENST00000329331.3,ENST00000331768.5,ENST00000436070.2	chr14	99925449:99925522:99927528:99927677:99929822:99929915,	99927529	99927677	99927567	99927567	Nonsense_Mutation	C	A	p.E103X
READ	TCGA-AG-A002-01	SFR1	ENST00000369727.3,ENST00000369729.3,ENST00000336358.5	chr10	105882722:105882844:105883471:105883882:105885270:105885602,	105883472	105883882	105883568	105883568	Nonsense_Mutation	G	T	p.E65X
READ	TCGA-AG-A002-01	SH3BGR	ENST00000440288.2,ENST00000380631.1,ENST00000380634.1,ENST00000380637.3,ENST00000333634.4	chr21	40834459:40834486:40847060:40847141:40871748:40871841,	40847061	40847141	40847088	40847088	Nonsense_Mutation	G	T	p.E150X
READ	TCGA-AG-A002-01	SIK2	ENST00000304987.3	chr11	111486966:111487083:111491062:111491126:111558724:111558886,	111491063	111491126	111491117	111491117	Nonsense_Mutation	G	T	p.E103X
READ	TCGA-AG-A002-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72055295	72055295	Nonsense_Mutation	C	T	p.R236X
READ	TCGA-AG-A002-01	SLC13A1	ENST00000439260.1,ENST00000539873.1,ENST00000427975.1,ENST00000194130.2	chr7	122765622:122765729:122768898:122769000:122769436:122769535,	122768899	122769000	122768993	122768993	Nonsense_Mutation	C	A	p.E347X
READ	TCGA-AG-A002-01	SLC16A14	ENST00000295190.4	chr2	230899697:230902247:230910460:230911438:230914476:230914620,	230910461	230911438	230910902	230910902	Nonsense_Mutation	G	A	p.R314X
READ	TCGA-AG-A002-01	SLC25A15	ENST00000478827.1,ENST00000338625.4	chr13	41379253:41379391:41381429:41381599:41382573:41382606,	41381430	41381599	41381512	41381512	Nonsense_Mutation	C	T	p.R179X
READ	TCGA-AG-A002-01	SLC30A9	ENST00000510460.1,ENST00000264451.7	chr4	42003632:42003797:42020127:42020187:42022432:42022532,	42020128	42020187	42020145	42020145	Nonsense_Mutation	G	T	p.E98X
READ	TCGA-AG-A002-01	SLC30A9	ENST00000513699.1,ENST00000505523.1,ENST00000264451.7	chr4	42077673:42077803:42080228:42080342:42088098:42088386,	42080229	42080342	42080286	42080286	Nonsense_Mutation	G	T	p.E536X
READ	TCGA-AG-A002-01	SLCO1C1	ENST00000266509.2,ENST00000545604.1,ENST00000540354.1,ENST00000381552.1	chr12	20848683:20848741:20852485:20852639:20854251:20854393,	20852486	20852639	20852529	20852529	Nonsense_Mutation	G	T	p.E7X
READ	TCGA-AG-A011-01	SMAD2	ENST00000356825.4,ENST00000586040.1,ENST00000591214.1,ENST00000402690.2,ENST00000262160.6	chr18	45377644:45377698:45391429:45391504:45394693:45394828,	45391430	45391504	45391478	45391478	Nonsense_Mutation	C	A	p.E198X
READ	TCGA-AG-3601-01	SMAP2	ENST00000372718.3	chr1	40839368:40839895:40872407:40872541:40874324:40874410,	40872408	40872541	40872452	40872452	Nonsense_Mutation	C	T	p.R45X
READ	TCGA-AG-A00C-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000549757.1,ENST00000552674.1	chr12	56575787:56575863:56577644:56577714:56577958:56578028,	56577645	56577714	56577682	56577682	Nonsense_Mutation	T	A	p.K199X
READ	TCGA-AG-A002-01	SNTG1	ENST00000524004.1	chr8	51571151:51571223:51617164:51617312:51621445:51621538,	51617165	51617312	51617192	51617192	Nonsense_Mutation	C	A	p.C357X
READ	TCGA-AG-A002-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000522124.1,ENST00000518864.1	chr8	51571151:51571223:51617159:51617312:51621445:51621538,	51617160	51617312	51617192	51617192	Nonsense_Mutation	C	A	p.C357X
READ	TCGA-AG-A002-01	SPAG16	ENST00000413312.1	chr2	214149139:214149475:214161985:214162081:214174782:214174901,	214161986	214162081	214162055	214162055	Nonsense_Mutation	G	T	p.E85X
READ	TCGA-AG-A002-01	SPAG16	ENST00000272898.7,ENST00000374309.3,ENST00000440779.1,ENST00000331683.5,ENST00000413312.1,ENST00000447990.1,ENST00000406979.2	chr2	214181942:214182080:214204886:214204994:214228799:214228869,214181942:214182080:214204886:214204994:214215251:214215369,	214204887	214204994	214204936	214204936	Nonsense_Mutation	C	T	p.R196X
READ	TCGA-AG-A002-01	SPAG6	ENST00000313311.6,ENST00000376603.2,ENST00000376624.3,ENST00000538630.1	chr10	22675682:22675888:22676751:22676925:22678088:22678241,	22676752	22676925	22676871	22676871	Nonsense_Mutation	C	A	p.Y266X
READ	TCGA-AG-A002-01	SPAG9	ENST00000514613.1,ENST00000505173.1,ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1	chr17	49077021:49077078:49079075:49079206:49082572:49082624,	49079076	49079206	49079095	49079095	Nonsense_Mutation	G	A	p.R516X
READ	TCGA-AG-A002-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000557866.1,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44925702:44925835:44941063:44941209:44943688:44943842,	44941064	44941209	44941171	44941171	Nonsense_Mutation	C	A	p.E499X
READ	TCGA-AG-A002-01	SPICE1	ENST00000295872.4	chr3	113166884:113166987:113169182:113169363:113172312:113172797,	113169183	113169363	113169309	113169309	Nonsense_Mutation	C	A	p.E733X
READ	TCGA-AG-A002-01	ST3GAL6	ENST00000485145.1,ENST00000497621.1,ENST00000469105.1,ENST00000492254.1,ENST00000486334.2,ENST00000493953.1,ENST00000477899.1,ENST00000483910.1,ENST00000462152.1,ENST00000394162.1	chr3	98503788:98503884:98506879:98507066:98507169:98507246,	98506880	98507066	98506953	98506953	Nonsense_Mutation	G	T	p.E169X
READ	TCGA-AG-A002-01	STAMBPL1	ENST00000371927.3,ENST00000371926.3,ENST00000371922.1,ENST00000371924.1	chr10	90674290:90674415:90676436:90676574:90681039:90681152,	90676437	90676574	90676446	90676446	Nonsense_Mutation	G	T	p.E305X
READ	TCGA-AG-A002-01	STIP1	ENST00000537479.1,ENST00000305218.4,ENST00000544739.1,ENST00000538497.1,ENST00000358794.5,ENST00000538945.1	chr11	63964742:63964869:63964964:63965067:63965325:63965446,	63964965	63965067	63965024	63965024	Nonsense_Mutation	G	T	p.E287X
READ	TCGA-AG-A002-01	STMN4	ENST00000523048.1,ENST00000350889.4,ENST00000522908.1	chr8	27098684:27098779:27099193:27099274:27099626:27100009,27098684:27098779:27099193:27099274:27099913:27100009,	27099194	27099274	27099209	27099209	Nonsense_Mutation	C	A	p.E59X
READ	TCGA-AG-A002-01	STRBP	ENST00000348403.5,ENST00000447404.2	chr9	125935955:125936121:125941285:125941506:125946410:125946577,	125941286	125941506	125941323	125941323	Nonsense_Mutation	C	A	p.E49X
READ	TCGA-AG-A002-01	STX18	ENST00000306200.2,ENST00000505286.1	chr4	4425244:4425314:4426890:4426949:4436496:4436584,	4426891	4426949	4426931	4426931	Nonsense_Mutation	G	A	p.R241X
READ	TCGA-AG-A002-01	STYXL1	ENST00000460184.2,ENST00000474328.1,ENST00000360591.3,ENST00000340062.5,ENST00000451157.1	chr7	75657959:75658021:75659738:75659842:75677129:75677271,	75659739	75659842	75659820	75659820	Nonsense_Mutation	C	A	p.E8X
READ	TCGA-AG-A002-01	STYXL1	ENST00000359697.3	chr7	75657959:75658021:75659738:75659845:75677129:75677271,75657959:75658021:75659738:75659845:75676979:75677281,	75659739	75659845	75659820	75659820	Nonsense_Mutation	C	A	p.E8X
READ	TCGA-AG-A002-01	SUCLG1	ENST00000487809.1,ENST00000393868.2	chr2	84652538:84652727:84658631:84658783:84660475:84660559,	84658632	84658783	84658709	84658709	Nonsense_Mutation	C	A	p.E250X
READ	TCGA-AG-A002-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114860861:114860942:114864455:114864565:114873933:114874120,	114864456	114864565	114864551	114864551	Nonsense_Mutation	C	A	p.E396X
READ	TCGA-AG-A002-01	SYK	ENST00000375754.4,ENST00000375751.4,ENST00000375746.1,ENST00000375747.1	chr9	93641045:93641235:93650030:93650171:93650796:93650909,	93650031	93650171	93650169	93650169	Nonsense_Mutation	C	T	p.R551X
READ	TCGA-AG-A002-01	SYTL3	ENST00000297239.9,ENST00000360448.3	chr6	159146537:159146669:159166511:159166690:159172959:159173062,	159166512	159166690	159166581	159166581	Nonsense_Mutation	G	T	p.E309X
READ	TCGA-AG-A002-01	TAX1BP1	ENST00000396319.2,ENST00000543117.1,ENST00000265393.6,ENST00000416801.2,ENST00000409980.1,ENST00000457186.2,ENST00000433216.2	chr7	27833968:27834065:27835734:27835838:27839583:27839709,	27835735	27835838	27835788	27835788	Nonsense_Mutation	G	T	p.E530X
READ	TCGA-AG-A002-01	TBC1D23	ENST00000475134.1,ENST00000344949.5,ENST00000486274.1,ENST00000394144.4	chr3	100013930:100014055:100014145:100014192:100015015:100015119,	100014146	100014192	100014147	100014147	Nonsense_Mutation	G	T	p.E243X
READ	TCGA-AG-A002-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883531	145883531	Nonsense_Mutation	G	T	p.E877X
READ	TCGA-AG-A002-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134042065:134042268:134107287:134107452:134108449:134108617,	134107288	134107452	134107393	134107393	Nonsense_Mutation	G	T	p.E2449X
READ	TCGA-AG-A002-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000543064.1	chr6	128150620:128151079:128176174:128176333:128221986:128222103,	128176175	128176333	128176286	128176286	Nonsense_Mutation	C	A	p.E47X
READ	TCGA-AG-A002-01	TMEM135	ENST00000525018.1,ENST00000340353.7,ENST00000305494.5,ENST00000355734.4,ENST00000529023.1	chr11	86778735:86778863:86782564:86782657:86802403:86802437,	86782565	86782657	86782644	86782644	Nonsense_Mutation	G	T	p.E117X
READ	TCGA-AG-A002-01	TMEM144	ENST00000511532.1,ENST00000503404.1,ENST00000296529.6	chr4	159162660:159162758:159165447:159165501:159174595:159176356,	159165448	159165501	159165493	159165493	Nonsense_Mutation	G	T	p.E316X
READ	TCGA-AG-A002-01	TMPO	ENST00000393053.2	chr12	98938728:98938839:98940136:98940225:98941350:98941479,98931252:98931350:98940136:98940225:98941350:98941479,	98940137	98940225	98940155	98940155	Nonsense_Mutation	G	T	p.E337X
READ	TCGA-AG-A002-01	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69095086	69095086	Nonsense_Mutation	C	A	p.E279X
READ	TCGA-AG-3594-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
READ	TCGA-AF-2689-01	TRIM73	ENST00000430211.1,ENST00000437796.1,ENST00000323819.3,ENST00000447409.2,ENST00000450434.1	chr7	75028391:75028616:75032927:75033023:75034121:75034352,	75032928	75033023	75033015	75033015	Nonsense_Mutation	C	T	p.R163X
READ	TCGA-AG-A002-01	TRPC4AP	ENST00000252015.2,ENST00000451813.2	chr20	33645316:33645374:33657098:33657215:33665848:33665977,	33657099	33657215	33657149	33657149	Nonsense_Mutation	C	A	p.E122X
READ	TCGA-AG-A002-01	TSTD2	ENST00000341170.4,ENST00000375163.1,ENST00000375172.2	chr9	100372627:100372733:100373855:100373981:100380038:100380134,	100373856	100373981	100373978	100373978	Nonsense_Mutation	G	A	p.R203X
READ	TCGA-AG-A002-01	TTC13	ENST00000366662.4,ENST00000466507.2,ENST00000414259.1,ENST00000481976.2,ENST00000522821.1	chr1	231093969:231094045:231096954:231097049:231114305:231114542,	231096955	231097049	231097001	231097001	Nonsense_Mutation	G	T	p.S107X
READ	TCGA-AG-A002-01	TTPA	ENST00000260116.4	chr8	63976764:63976875:63978462:63978656:63985493:63985647,	63978463	63978656	63978615	63978615	Nonsense_Mutation	G	A	p.R134X
READ	TCGA-AG-A002-01	UBE3B	ENST00000538070.1,ENST00000434735.2,ENST00000342494.3	chr12	109962242:109962308:109964162:109964221:109967694:109967877,	109964163	109964221	109964214	109964214	Nonsense_Mutation	G	T	p.E874X
READ	TCGA-AG-A002-01	UGGT2	ENST00000461329.1,ENST00000465196.1,ENST00000376747.3,ENST00000397618.3	chr13	96638586:96638686:96642226:96642327:96648316:96648389,	96642227	96642327	96642326	96642326	Nonsense_Mutation	C	A	p.E278X
READ	TCGA-AG-A002-01	USP13	ENST00000263966.3,ENST00000496897.1	chr3	179481789:179481956:179483482:179483636:179499526:179499611,	179483483	179483636	179483558	179483558	Nonsense_Mutation	G	T	p.E779X
READ	TCGA-AG-A002-01	UTP6	ENST00000484661.1,ENST00000261708.4,ENST00000477128.1	chr17	30190367:30190535:30192384:30192457:30195064:30195124,	30192385	30192457	30192430	30192430	Nonsense_Mutation	C	A	p.E531X
READ	TCGA-AG-A002-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82832870	82832870	Nonsense_Mutation	G	T	p.E1350X
READ	TCGA-AG-A002-01	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58311223:58311273:58312015:58312085:58313473:58313561,	58312016	58312085	58312046	58312046	Nonsense_Mutation	G	T	p.E73X
READ	TCGA-AG-A002-01	VSIG2	ENST00000326621.5,ENST00000403470.1	chr11	124619603:124619762:124620609:124620817:124621318:124621476,	124620610	124620817	124620809	124620809	Nonsense_Mutation	G	T	p.Y76X
READ	TCGA-AG-A002-01	WDR53	ENST00000332629.5	chr3	196281064:196281678:196287866:196288362:196293747:196294178,	196287867	196288362	196288061	196288061	Nonsense_Mutation	C	A	p.E96X
READ	TCGA-AG-A002-01	WDR64	ENST00000425826.2,ENST00000468967.2,ENST00000366552.2,ENST00000437684.2,ENST00000472717.2,ENST00000414635.1	chr1	241943305:241943364:241946573:241946683:241951150:241951196,	241946574	241946683	241946640	241946640	Nonsense_Mutation	G	T	p.E878X
READ	TCGA-AG-A002-01	WRN	ENST00000298139.5	chr8	30946405:30946481:30947980:30948048:30948349:30948458,	30947981	30948048	30948015	30948015	Nonsense_Mutation	G	T	p.E563X
READ	TCGA-AG-A002-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21312920:21313078:21314181:21314256:21314341:21314475,	21314182	21314256	21314218	21314218	Nonsense_Mutation	G	T	p.G299X
READ	TCGA-AG-A002-01	ZDHHC23	ENST00000498275.1	chr3	113667532:113667581:113667666:113667810:113672546:113672829,	113667667	113667810	113667698	113667698	Nonsense_Mutation	G	T	p.E17X
READ	TCGA-AG-A002-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39831594	39831594	Nonsense_Mutation	C	A	p.E655X
READ	TCGA-AG-A002-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39831594	39831594	Nonsense_Mutation	C	A	p.E655X
READ	TCGA-AG-A002-01	ZNF254	ENST00000594886.1,ENST00000595187.1,ENST00000357002.4	chr19	24288741:24288868:24289349:24289445:24309055:24309122,	24289350	24289445	24289408	24289408	Nonsense_Mutation	G	A	p.W72X
READ	TCGA-AG-A002-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650056	71650056	Nonsense_Mutation	G	T	p.E1138X
READ	TCGA-AG-A002-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404288	91404288	Nonsense_Mutation	C	A	p.E875X
READ	TCGA-AG-A002-01	ZNF800	ENST00000265827.3,ENST00000436992.1,ENST00000393312.1,ENST00000439506.1,ENST00000393313.1,ENST00000434602.1	chr7	127017329:127017383:127026113:127026209:127031550:127031669,	127026114	127026209	127026120	127026120	Nonsense_Mutation	G	A	p.R51X
SARC	TCGA-3B-A9HS-01	CCPG1	ENST00000570272.1,ENST00000425574.3,ENST00000310958.6,ENST00000442196.3,ENST00000569205.1,ENST00000564092.1,ENST00000568808.1,ENST00000563171.1	chr15	55670497:55670574:55677797:55677912:55681562:55681631,	55677798	55677912	55677813	55677813	Nonsense_Mutation	G	A	p.Q54*
SARC	TCGA-3B-A9HS-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76920133:76920267:76931720:76931793:76937011:76937093,	76931721	76931793	76931772	76931772	Nonsense_Mutation	G	C	p.S1253*
SARC	TCGA-KD-A5QU-01	UBE3B	ENST00000539599.1,ENST00000434735.2,ENST00000539584.1,ENST00000449510.2,ENST00000280774.5,ENST00000342494.3	chr12	109947400:109947519:109948148:109948263:109949008:109949108,	109948149	109948263	109948259	109948259	Nonsense_Mutation	C	T	p.R618*
SARC	TCGA-DX-AB2P-01	PTK2	ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000521059.1,ENST00000520828.1,ENST00000340930.3,ENST00000395218.2,ENST00000522684.1,ENST00000520475.1,ENST00000535192.1	chr8	141874410:141874498:141889569:141889736:141900641:141900702,	141889570	141889736	141889657	141889657	Nonsense_Mutation	G	T	p.S92*
SARC	TCGA-DX-A3UE-01	AARS2	ENST00000244571.4	chr6	44274985:44275131:44278035:44278180:44278730:44278898,	44278036	44278180	44278041	44278041	Nonsense_Mutation	G	A	p.Q297*
SARC	TCGA-DX-A3UE-01	P2RX7	ENST00000541564.1,ENST00000541446.1,ENST00000539695.1,ENST00000541022.1	chr12	121603159:121603240:121603860:121603990:121605290:121605427,121603159:121603240:121603860:121603990:121613190:121613281,	121603861	121603990	121603881	121603881	Nonsense_Mutation	T	A	p.L42*
SARC	TCGA-WP-A9GB-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618467	47618467	Nonsense_Mutation	A	T	p.L350*
SARC	TCGA-DX-AB2V-01	B4GALNT3	ENST00000322843.3,ENST00000266383.5,ENST00000544638.1	chr12	655811:655879:657189:657268:657396:657463,	657190	657268	657218	657218	Nonsense_Mutation	G	T	p.E246*
SARC	TCGA-DX-A8BV-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
SARC	TCGA-IW-A3M4-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000560372.1,ENST00000509867.2,ENST00000358602.4	chr4	74012480:74012590:74012957:74013149:74014529:74014767,	74012958	74013149	74012985	74012985	Nonsense_Mutation	C	A	p.E578*
SARC	TCGA-DX-A6YR-01	LY9	ENST00000368037.5,ENST00000368035.1,ENST00000368040.1,ENST00000263285.6	chr1	160784312:160784551:160786383:160786653:160788007:160788107,	160786384	160786653	160786540	160786540	Nonsense_Mutation	C	A	p.S410*
SARC	TCGA-DX-A6YR-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539627	187539627	Nonsense_Mutation	C	A	p.E2705*
SARC	TCGA-DX-A6YU-01	RAB11FIP1	ENST00000330843.4	chr8	37732032:37732840:37734626:37735069:37756588:37756972,	37734627	37735069	37734915	37734915	Nonsense_Mutation	T	A	p.K176*
SARC	TCGA-DX-A3U9-01	ACSS2	ENST00000253382.5,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33501555:33501628:33501898:33501974:33502125:33502240,	33501899	33501974	33501958	33501958	Nonsense_Mutation	C	T	p.Q235*
SARC	TCGA-DX-A3U9-01	HPSE2	ENST00000370552.3,ENST00000370546.1	chr10	100453656:100453704:100481413:100481585:100503639:100503809,	100481414	100481585	100481499	100481499	Nonsense_Mutation	G	A	p.Q291*
SARC	TCGA-X6-A7WC-01	MANEA	ENST00000358812.4	chr6	96025418:96025514:96034277:96034859:96044612:96044722,	96034278	96034859	96034835	96034835	Nonsense_Mutation	A	T	p.R174*
SARC	TCGA-DX-AB37-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
SARC	TCGA-SG-A6Z4-01	GSE1	ENST00000393243.1,ENST00000253458.7,ENST00000405402.2,ENST00000412692.1	chr16	85690882:85691210:85694751:85695371:85696586:85696699,	85694752	85695371	85694912	85694912	Nonsense_Mutation	G	T	p.E601*
SARC	TCGA-DX-A2J1-01	SLC31A2	ENST00000259392.3	chr9	115920006:115920073:115923788:115923978:115925028:115925200,	115923789	115923978	115923945	115923945	Nonsense_Mutation	C	G	p.S77*
SARC	TCGA-DX-A2J1-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
SARC	TCGA-IS-A3KA-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96005702:96006378:96012072:96012255:96013946:96014064,	96012073	96012255	96012079	96012079	Nonsense_Mutation	G	T	p.G1035*
SARC	TCGA-HS-A5N7-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088786	27088786	Nonsense_Mutation	C	T	p.Q799*
SARC	TCGA-FX-A2QS-01	DIS3L	ENST00000532580.1,ENST00000565281.1,ENST00000564909.1,ENST00000319194.5,ENST00000530615.1,ENST00000319212.4	chr15	66587434:66587479:66599161:66599290:66601046:66601165,	66599162	66599290	66599178	66599178	Nonsense_Mutation	C	T	p.R21*
SARC	TCGA-FX-A2QS-01	DIS3L	ENST00000525109.1	chr15	66587434:66587479:66599099:66599290:66601046:66601165,	66599100	66599290	66599178	66599178	Nonsense_Mutation	C	T	p.R21*
SARC	TCGA-HS-A5N9-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579521	7579521	Nonsense_Mutation	C	A	p.E56*
SARC	TCGA-HS-A5N9-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300164	21300164	Nonsense_Mutation	G	T	p.E232*
SARC	TCGA-HS-A5N9-01	EEPD1	ENST00000242108.4,ENST00000534978.1,ENST00000468591.1	chr7	36327247:36327386:36336601:36336796:36338615:36338801,	36336602	36336796	36336745	36336745	Nonsense_Mutation	A	T	p.K487*
SARC	TCGA-DX-A7EI-01	PRODH2	ENST00000301175.3	chr19	36297331:36297498:36297576:36297732:36297942:36298023,	36297577	36297732	36297635	36297635	Nonsense_Mutation	C	T	p.W335*
SARC	TCGA-DX-AB2W-01	TNK2	ENST00000381916.2,ENST00000481865.1,ENST00000392400.1,ENST00000316664.3,ENST00000428187.1,ENST00000439230.1,ENST00000438207.1,ENST00000333602.6	chr3	195605992:195606046:195608921:195609199:195609315:195609398,195605992:195606046:195608921:195609199:195610027:195610180,	195608922	195609199	195609097	195609097	Nonsense_Mutation	C	A	p.E238*
SARC	TCGA-DX-AB2W-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91691587:91691800:91694544:91694777:91695740:91695860,	91694545	91694777	91694631	91694631	Nonsense_Mutation	C	T	p.Q2034*
SARC	TCGA-MB-A5YA-01	TMX2	ENST00000529403.1,ENST00000278422.4	chr11	57505079:57505140:57505825:57505902:57506135:57506242,57505307:57505498:57505825:57505902:57506135:57506242,	57505826	57505902	57505881	57505881	Nonsense_Mutation	C	G	p.Y140*
SARC	TCGA-DX-A48K-01	EPB41L2	ENST00000527423.1,ENST00000368128.2,ENST00000337057.3	chr6	131191216:131191266:131199243:131199390:131201283:131201346,	131199244	131199390	131199287	131199287	Nonsense_Mutation	C	T	p.W667*
SARC	TCGA-DX-A48K-01	RIPK4	ENST00000332512.3,ENST00000544709.1,ENST00000542057.1	chr21	43165918:43166022:43166772:43166931:43169313:43169363,	43166773	43166931	43166794	43166794	Nonsense_Mutation	G	A	p.R271*
SARC	TCGA-QC-A7B5-01	MLEC	ENST00000412616.2	chr12	121125047:121125334:121131893:121132072:121134118:121134156,	121131894	121132072	121131956	121131956	Nonsense_Mutation	C	T	p.Q100*
SARC	TCGA-QC-A7B5-01	TM4SF1	ENST00000493348.1	chr3	149087284:149087667:149089473:149089654:149093466:149093556,	149089474	149089654	149089530	149089530	Nonsense_Mutation	G	A	p.Q91*
SARC	TCGA-QC-A7B5-01	RYR1	ENST00000593322.1,ENST00000359596.3,ENST00000355481.4,ENST00000594335.1,ENST00000360985.3	chr19	39034171:39034300:39034410:39034515:39037084:39037166,	39034411	39034515	39034458	39034458	Nonsense_Mutation	G	A	p.W3980*
SARC	TCGA-QC-A7B5-01	SIRT1	ENST00000212015.6,ENST00000497639.1	chr10	69647174:69647291:69648639:69648881:69651159:69651254,	69648640	69648881	69648754	69648754	Nonsense_Mutation	G	A	p.W221*
SARC	TCGA-QC-A7B5-01	TTC1	ENST00000518560.1	chr5	159478135:159478190:159491938:159492029:159492283:159492494,	159491939	159492029	159491941	159491941	Nonsense_Mutation	A	T	p.K250*
SARC	TCGA-QC-A7B5-01	TTPA	ENST00000260116.4	chr8	63978462:63978656:63985493:63985647:63998376:63998608,	63985494	63985647	63985641	63985641	Nonsense_Mutation	T	A	p.K71*
SARC	TCGA-QC-A7B5-01	GLB1L2	ENST00000535456.2,ENST00000529077.1,ENST00000389881.3,ENST00000525089.2,ENST00000339772.7	chr11	134244038:134244150:134244495:134244612:134244865:134244948,	134244496	134244612	134244501	134244501	Nonsense_Mutation	G	A	p.W571*
SARC	TCGA-QC-A7B5-01	PDE1C	ENST00000321453.7,ENST00000396193.1,ENST00000396184.3,ENST00000396182.2,ENST00000396191.1	chr7	31876793:31876914:31877483:31877585:31887581:31887710,	31877484	31877585	31877578	31877578	Nonsense_Mutation	G	A	p.R330*
SARC	TCGA-QC-A7B5-01	FMNL1	ENST00000587856.1,ENST00000328118.3,ENST00000587489.1,ENST00000331495.3	chr17	43319707:43319832:43320484:43320687:43321157:43321392,	43320485	43320687	43320530	43320530	Nonsense_Mutation	C	T	p.Q686*
SARC	TCGA-QC-A7B5-01	FGL1	ENST00000518650.1,ENST00000398056.2,ENST00000427924.1,ENST00000522444.1,ENST00000398054.1,ENST00000381841.2,ENST00000523097.1,ENST00000381840.2	chr8	17731527:17731625:17731870:17732030:17739507:17739674,	17731871	17732030	17731905	17731905	Nonsense_Mutation	G	A	p.Q124*
SARC	TCGA-QC-A7B5-01	TRA2A	ENST00000474586.1,ENST00000490942.1,ENST00000538367.1,ENST00000494255.1,ENST00000297071.4,ENST00000392502.4	chr7	23552643:23552701:23555981:23556147:23561325:23561459,	23555982	23556147	23556110	23556110	Nonsense_Mutation	G	A	p.R70*
SARC	TCGA-QC-A7B5-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450638	55450638	Nonsense_Mutation	G	A	p.Q545*
SARC	TCGA-QC-A7B5-01	CHD4	ENST00000357008.2,ENST00000544040.1	chr12	6692192:6692279:6692363:6692544:6696549:6696725,	6692364	6692544	6692433	6692433	Nonsense_Mutation	G	A	p.R1331*
SARC	TCGA-QC-A7B5-01	CHD4	ENST00000540960.1	chr12	6692192:6692279:6692363:6692541:6696549:6696725,	6692364	6692541	6692433	6692433	Nonsense_Mutation	G	A	p.R1331*
SARC	TCGA-QC-A7B5-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2	chr2	171300476:171300556:171319877:171319955:171323015:171323221,	171319878	171319955	171319908	171319908	Nonsense_Mutation	G	T	p.E930*
SARC	TCGA-QC-A7B5-01	PTPN7	ENST00000435759.2	chr1	202126866:202126951:202127245:202127448:202128408:202128469,	202127246	202127448	202127347	202127347	Nonsense_Mutation	C	A	p.E174*
SARC	TCGA-QC-A7B5-01	PTPN7	ENST00000308986.5,ENST00000477554.1,ENST00000476061.1,ENST00000486116.1,ENST00000309017.3,ENST00000464870.1,ENST00000495688.1	chr1	202126866:202126951:202127245:202127429:202128408:202128469,	202127246	202127429	202127347	202127347	Nonsense_Mutation	C	A	p.E174*
SARC	TCGA-QC-A7B5-01	PTPN7	ENST00000496197.1	chr1	202126866:202126951:202127245:202127376:202128408:202128469,	202127246	202127376	202127347	202127347	Nonsense_Mutation	C	A	p.E174*
SARC	TCGA-QC-A7B5-01	CHD1L	ENST00000369258.4,ENST00000431239.1,ENST00000467213.1	chr1	146731490:146731572:146736080:146736243:146737590:146737746,	146736081	146736243	146736135	146736135	Nonsense_Mutation	C	T	p.Q211*
SARC	TCGA-QC-A7B5-01	DPF2	ENST00000530993.1,ENST00000528416.1,ENST00000532264.1,ENST00000252268.4	chr11	65108436:65108544:65108869:65109033:65111215:65111308,	65108870	65109033	65108977	65108977	Nonsense_Mutation	C	T	p.R137*
SARC	TCGA-QC-A7B5-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641177	36641177	Nonsense_Mutation	G	A	p.Q348*
SARC	TCGA-QC-A7B5-01	BTBD11	ENST00000420571.2,ENST00000494235.2,ENST00000280758.5,ENST00000357167.4	chr12	108042982:108043051:108045450:108045564:108051285:108051495,	108045451	108045564	108045475	108045475	Nonsense_Mutation	C	T	p.Q1006*
SARC	TCGA-QC-A7B5-01	RSAD1	ENST00000506211.1	chr17	48560003:48560067:48560700:48560792:48561066:48561121,	48560701	48560792	48560724	48560724	Nonsense_Mutation	C	T	p.Q310*
SARC	TCGA-QC-A7B5-01	RSAD1	ENST00000504284.1,ENST00000258955.2	chr17	48560003:48560067:48560700:48560848:48561066:48561121,	48560701	48560848	48560724	48560724	Nonsense_Mutation	C	T	p.Q310*
SARC	TCGA-QC-A7B5-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752123	36752123	Nonsense_Mutation	C	T	p.Q98*
SARC	TCGA-QC-A7B5-01	JUP	ENST00000393930.1,ENST00000393931.3,ENST00000449889.1,ENST00000310706.5,ENST00000420370.1,ENST00000424457.1,ENST00000437187.1	chr17	39925220:39925459:39925669:39925929:39927898:39928106,	39925670	39925929	39925777	39925777	Nonsense_Mutation	G	A	p.Q121*
SARC	TCGA-FX-A8OO-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806526	33806526	Nonsense_Mutation	G	A	p.R235*
SARC	TCGA-DX-A8BG-01	FGG	ENST00000404648.3,ENST00000405164.1,ENST00000492082.1	chr4	155525324:155525506:155526048:155526218:155527856:155527974,	155526049	155526218	155526181	155526181	Nonsense_Mutation	A	C	p.Y389*
SARC	TCGA-DX-A8BG-01	PACSIN3	ENST00000539589.1,ENST00000298838.6,ENST00000532457.1,ENST00000528462.1	chr11	47199539:47199597:47199916:47200038:47200444:47200578,	47199917	47200038	47199923	47199923	Nonsense_Mutation	G	A	p.R385*
SARC	TCGA-3B-A9HZ-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7635561:7635600:7635962:7636271:7637691:7637940,	7635963	7636271	7636086	7636086	Nonsense_Mutation	C	A	p.G989*
SARC	TCGA-DX-AB2G-01	CPT1A	ENST00000565318.1,ENST00000569129.1,ENST00000376618.2,ENST00000539743.1,ENST00000265641.5	chr11	68575034:68575106:68579904:68580044:68582801:68582955,	68579905	68580044	68579947	68579947	Nonsense_Mutation	G	T	p.S80*
SARC	TCGA-3B-A9HI-01	PRKCG	ENST00000540413.1,ENST00000263431.3	chr19	54407888:54407996:54409570:54409711:54409960:54410145,	54409571	54409711	54409605	54409605	Nonsense_Mutation	C	A	p.S600*
SARC	TCGA-DX-A240-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56565177:56565216:56565462:56565721:56566211:56566274,	56565463	56565721	56565571	56565571	Nonsense_Mutation	G	A	p.Q693*
SARC	TCGA-QQ-A8VG-01	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645158	46645158	Nonsense_Mutation	G	A	p.R568*
SARC	TCGA-QQ-A8VG-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266069	75266069	Nonsense_Mutation	C	T	p.R1357*
SARC	TCGA-QQ-A8VG-01	WDR49	ENST00000479765.1	chr3	167339256:167339431:167344639:167345080:167371048:167371287,	167344640	167345080	167344937	167344937	Nonsense_Mutation	C	T	p.W103*
SARC	TCGA-DX-A6BH-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5250183:5250220:5253745:5253924:5257653:5257785,	5253746	5253924	5253801	5253801	Nonsense_Mutation	G	A	p.W280*
SARC	TCGA-DX-A3LS-01	USP48	ENST00000529637.1,ENST00000421625.2,ENST00000400301.1,ENST00000308271.9,ENST00000374730.2	chr1	22062938:22063118:22073559:22073642:22074630:22074684,	22073560	22073642	22073626	22073626	Nonsense_Mutation	T	A	p.K309*
SARC	TCGA-FX-A76Y-01	FAM19A5	ENST00000358295.5,ENST00000402357.1	chr22	49042408:49042558:49103528:49103656:49145650:49146220,	49103529	49103656	49103610	49103610	Nonsense_Mutation	C	A	p.S108*
SARC	TCGA-DX-A8BN-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939577	76939577	Nonsense_Mutation	G	A	p.Q391*
SARC	TCGA-3B-A9HT-01	FHIT	ENST00000476844.1	chr3	59735035:59735294:59737946:59738047:59908071:59908140,	59737947	59738047	59738002	59738002	Nonsense_Mutation	C	A	p.E132*
SARC	TCGA-3B-A9HT-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91*
SARC	TCGA-3B-A9HT-01	CEP72	ENST00000444221.1,ENST00000264935.5	chr5	637631:637933:639203:639339:640522:640719,	639204	639339	639252	639252	Nonsense_Mutation	C	T	p.Q419*
SARC	TCGA-3B-A9HT-01	CAMK2G	ENST00000472912.1,ENST00000423381.1,ENST00000372765.1,ENST00000322635.3	chr10	75597225:75597269:75599296:75599359:75601926:75601969,	75599297	75599359	75599351	75599351	Nonsense_Mutation	G	A	p.Q319*
SARC	TCGA-3B-A9HT-01	CDC45	ENST00000404724.3,ENST00000263201.1,ENST00000407835.1	chr22	19471384:19471528:19481849:19481905:19483503:19483509,	19481850	19481905	19481886	19481886	Nonsense_Mutation	C	T	p.R175*
SARC	TCGA-QQ-A8VB-01	KLHL4	ENST00000373114.4,ENST00000373119.4	chrX	86887209:86887434:86888748:86888911:86890562:86890775,	86888749	86888911	86888841	86888841	Nonsense_Mutation	C	T	p.R548*
SARC	TCGA-QQ-A8VB-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5385192:5385441:5391449:5391725:5396546:5396907,	5391450	5391725	5391711	5391711	Nonsense_Mutation	C	A	p.E1737*
SARC	TCGA-QQ-A8VF-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123164810:123164975:123171376:123171473:123176418:123176495,	123171377	123171473	123171416	123171416	Nonsense_Mutation	C	T	p.R110*
SARC	TCGA-QQ-A8VF-01	DUSP18	ENST00000407308.1	chr22	31048082:31048284:31059390:31060067:31063448:31063796,31048082:31048284:31059390:31060067:31062793:31062925,	31059391	31060067	31059789	31059789	Nonsense_Mutation	G	A	p.Q68*
SARC	TCGA-QQ-A8VF-01	ECI1	ENST00000570258.1,ENST00000301729.4,ENST00000566379.1	chr16	2290037:2290146:2293046:2293225:2293318:2293440,	2293047	2293225	2293092	2293092	Nonsense_Mutation	G	A	p.Q233*
SARC	TCGA-QQ-A8VF-01	TYMP	ENST00000487577.1,ENST00000252029.3,ENST00000395680.1,ENST00000395681.1,ENST00000395678.3,ENST00000476284.1	chr22	50966016:50966146:50966940:50967039:50967564:50967723,	50966941	50967039	50966946	50966946	Nonsense_Mutation	C	A	p.E171*
SARC	TCGA-QQ-A8VF-01	KRR1	ENST00000229214.4	chr12	75895702:75895780:75897683:75897854:75898977:75899034,	75897684	75897854	75897812	75897812	Nonsense_Mutation	G	A	p.R235*
SARC	TCGA-QQ-A8VF-01	XKRX	ENST00000372956.2	chrX	100169287:100170072:100177781:100178050:100182958:100183024,	100177782	100178050	100178001	100178001	Nonsense_Mutation	G	A	p.Q142*
SARC	TCGA-VT-AB3D-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939697	76939697	Nonsense_Mutation	C	A	p.E351*
SARC	TCGA-IF-A4AJ-01	PFAS	ENST00000581288.1,ENST00000585319.1,ENST00000314666.6,ENST00000545834.1,ENST00000580356.1	chr17	8166892:8166954:8167092:8167254:8167529:8167585,	8167093	8167254	8167128	8167128	Nonsense_Mutation	G	A	p.W555*
SARC	TCGA-DX-A8BH-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42046088	42046088	Nonsense_Mutation	T	A	p.K1461*
SARC	TCGA-DX-A8BH-01	PDCD4	ENST00000280154.7,ENST00000462577.1,ENST00000393104.2	chr10	112650395:112650428:112653848:112653956:112654169:112654280,	112653849	112653956	112653894	112653894	Nonsense_Mutation	G	T	p.E335*
SARC	TCGA-DX-A8BH-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42265786:42265893:42271118:42271264:42275575:42275857,	42271119	42271264	42271199	42271199	Nonsense_Mutation	C	T	p.Q401*
SARC	TCGA-DX-AATS-01	BTN3A3	ENST00000244519.2,ENST00000339789.4,ENST00000361232.3,ENST00000487272.1	chr6	26444238:26444532:26445931:26446213:26448475:26448637,	26445932	26446213	26445970	26445970	Nonsense_Mutation	G	T	p.E158*
SARC	TCGA-DX-AATS-01	TAF1C	ENST00000570117.1,ENST00000566903.1,ENST00000566732.1,ENST00000570270.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000562445.1,ENST00000341690.6	chr16	84215035:84215069:84215197:84215269:84215351:84215364,	84215198	84215269	84215231	84215231	Nonsense_Mutation	G	T	p.S358*
SARC	TCGA-SI-AA8B-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938686	76938686	Nonsense_Mutation	T	A	p.K688*
SARC	TCGA-SI-AA8B-01	SLAIN2	ENST00000506375.1,ENST00000264313.6	chr4	48371865:48372014:48379912:48380077:48381706:48381741,	48379913	48380077	48380035	48380035	Nonsense_Mutation	C	T	p.R221*
SARC	TCGA-SI-AA8B-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26218075	26218075	Nonsense_Mutation	A	T	p.K250*
SARC	TCGA-VT-A80J-01	ECM1	ENST00000369049.4,ENST00000369047.4	chr1	150483351:150483674:150483932:150484307:150484827:150485048,	150483933	150484307	150484038	150484038	Nonsense_Mutation	G	T	p.E272*
SARC	TCGA-VT-A80J-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387501	70387501	Nonsense_Mutation	G	A	p.W498*
SARC	TCGA-VT-A80J-02	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
SARC	TCGA-VT-A80J-02	ECM1	ENST00000369049.4,ENST00000369047.4	chr1	150483351:150483674:150483932:150484307:150484827:150485048,	150483933	150484307	150484038	150484038	Nonsense_Mutation	G	T	p.E272*
SARC	TCGA-VT-A80J-02	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387501	70387501	Nonsense_Mutation	G	A	p.W498*
SARC	TCGA-DX-A1L1-01	GRIP1	ENST00000545666.1,ENST00000540433.1,ENST00000542309.1,ENST00000359742.4,ENST00000538211.1,ENST00000539540.1,ENST00000540854.1,ENST00000536215.1,ENST00000398016.3,ENST00000286445.7	chr12	66911728:66911756:66923610:66923694:66932857:66932888,	66923611	66923694	66923641	66923641	Nonsense_Mutation	C	A	p.E158*
SARC	TCGA-DX-A1L1-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616855	116616855	Nonsense_Mutation	G	C	p.Y447*
SARC	TCGA-DX-A1L1-01	DCDC1	ENST00000597505.1,ENST00000437348.1,ENST00000342355.4	chr11	31125194:31125316:31128343:31128507:31131806:31131908,	31128344	31128507	31128498	31128498	Nonsense_Mutation	T	A	p.K533*
SARC	TCGA-DX-A6YZ-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167943782:167943955:167944819:167945067:167946085:167946303,	167944820	167945067	167944910	167944910	Nonsense_Mutation	G	A	p.W572*
SARC	TCGA-DX-A6YZ-01	PHF20L1	ENST00000220847.7,ENST00000460236.1,ENST00000395390.2,ENST00000395386.2	chr8	133849956:133850056:133851631:133851827:133854759:133855120,	133851632	133851827	133851693	133851693	Nonsense_Mutation	C	A	p.C751*
SARC	TCGA-DX-A6YZ-01	PNPLA3	ENST00000406117.2,ENST00000216180.3,ENST00000423180.2	chr22	44332930:44333152:44335872:44336005:44340570:44340675,	44335873	44336005	44335890	44335890	Nonsense_Mutation	A	T	p.K333*
SARC	TCGA-IE-A4EK-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345393	119345393	Nonsense_Mutation	C	A	p.E249*
SARC	TCGA-QQ-A8VH-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288739	74288739	Nonsense_Mutation	A	T	p.L524*
SARC	TCGA-IS-A3K7-01	PIGG	ENST00000506898.1,ENST00000383028.4,ENST00000453061.2,ENST00000504346.1,ENST00000509768.1	chr4	509761:509974:514844:515062:515448:515730,	514845	515062	515060	515060	Nonsense_Mutation	G	T	p.E444*
SARC	TCGA-IS-A3K7-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
SARC	TCGA-IS-A3K7-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50245518:50245611:50255881:50256043:50273476:50273689,	50255882	50256043	50255956	50255956	Nonsense_Mutation	G	A	p.Q532*
SARC	TCGA-DX-A6YQ-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130408572:130408851:130408972:130409260:130409451:130409739,	130408973	130409260	130409008	130409008	Nonsense_Mutation	G	T	p.S1137*
SARC	TCGA-DX-A6YQ-01	NF2	ENST00000361452.4	chr22	29999987:30000101:30032739:30032865:30035078:30035201,29999987:30000101:30032739:30032865:30038190:30038274,	30032740	30032865	30032860	30032860	Nonsense_Mutation	A	T	p.K79*
SARC	TCGA-DX-A2IZ-01	DNAH12	ENST00000495027.1,ENST00000351747.2	chr3	57440501:57440621:57443447:57443730:57443825:57443947,	57443448	57443730	57443570	57443570	Nonsense_Mutation	G	A	p.R1049*
SARC	TCGA-DX-A6YV-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184918	46184918	Nonsense_Mutation	G	T	p.C381*
SARC	TCGA-DX-A6YV-01	HSPBAP1	ENST00000306103.2,ENST00000383659.1	chr3	122459849:122459960:122471437:122471521:122474106:122474278,	122471438	122471521	122471498	122471498	Nonsense_Mutation	C	T	p.W255*
SARC	TCGA-DX-A6YV-01	TET3	ENST00000409262.3	chr2	74307624:74307718:74314956:74315165:74317023:74317174,	74314957	74315165	74315062	74315062	Nonsense_Mutation	G	T	p.E794*
SARC	TCGA-DX-A6YV-01	OBSCN	ENST00000570156.2,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228552681:228552778:228553136:228553261:228553774:228553887,	228553137	228553261	228553210	228553210	Nonsense_Mutation	G	T	p.E7295*
SARC	TCGA-DX-A6BK-01	CPNE1	ENST00000439669.1	chr20	34219866:34219947:34220084:34220170:34220232:34220307,	34220085	34220170	34220147	34220147	Nonsense_Mutation	G	A	p.Q132*
SARC	TCGA-DX-A6BK-01	CPNE1	ENST00000317677.5,ENST00000414664.1,ENST00000401607.2,ENST00000420363.1,ENST00000434795.1,ENST00000397442.1,ENST00000317619.3,ENST00000352393.4,ENST00000439806.2,ENST00000483495.1,ENST00000440240.1,ENST00000397446.1,ENST00000397443.1,ENST00000437340.1,ENST00000397445.1	chr20	34219866:34219947:34220084:34220156:34220232:34220307,	34220085	34220156	34220147	34220147	Nonsense_Mutation	G	A	p.Q132*
SARC	TCGA-DX-A6BK-01	FABP7	ENST00000368444.3	chr6	123101435:123101608:123102237:123102339:123104861:123105219,	123102238	123102339	123102295	123102295	Nonsense_Mutation	G	T	p.E102*
SARC	TCGA-DX-A6BK-01	RAB3B	ENST00000371655.3	chr1	52398989:52399114:52402965:52403084:52442561:52442789,	52402966	52403084	52403061	52403061	Nonsense_Mutation	G	T	p.Y84*
SARC	TCGA-QQ-A8VD-01	CPT1A	ENST00000565318.1,ENST00000569129.1,ENST00000376618.2,ENST00000539743.1,ENST00000265641.5	chr11	68575034:68575106:68579904:68580044:68582801:68582955,	68579905	68580044	68580021	68580021	Nonsense_Mutation	G	T	p.Y55*
SARC	TCGA-X6-A8C6-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000521398.1,ENST00000522006.1	chr6	112510332:112510407:112512837:112513052:112522808:112522889,	112512838	112513052	112512893	112512893	Nonsense_Mutation	A	T	p.C221*
SARC	TCGA-HB-A2OT-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939959	76939959	Nonsense_Mutation	C	T	p.W263*
SARC	TCGA-HB-A2OT-01	SIRT3	ENST00000525319.1,ENST00000529382.1,ENST00000382743.4,ENST00000532837.1	chr11	216610:216718:218831:219041:224077:224239,	218832	219041	218993	218993	Nonsense_Mutation	G	A	p.R340*
SARC	TCGA-HB-A2OT-01	SIRT3	ENST00000524564.1	chr11	216610:216718:218777:219041:224077:224239,	218778	219041	218993	218993	Nonsense_Mutation	G	A	p.R340*
SARC	TCGA-DX-A1KX-01	PMEL	ENST00000552882.1,ENST00000549413.1,ENST00000548747.1,ENST00000360714.4,ENST00000536427.1,ENST00000547137.1,ENST00000548803.1,ENST00000550590.1,ENST00000549418.1,ENST00000548493.1	chr12	56352330:56352391:56355405:56355516:56359719:56359732,56355227:56355247:56355405:56355516:56359719:56359732,	56355406	56355516	56355454	56355454	Nonsense_Mutation	G	A	p.Q47*
SARC	TCGA-DX-A3UC-01	PRMT2	ENST00000458387.2	chr21	48081711:48081848:48083294:48083466:48084206:48084857,48069609:48069651:48083294:48083466:48084206:48084857,	48083295	48083466	48083355	48083355	Nonsense_Mutation	A	T	p.R239*
SARC	TCGA-DX-A8BP-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860235	96860235	Nonsense_Mutation	G	T	p.E409*
SARC	TCGA-DX-A8BP-01	ZNF483	ENST00000358151.4	chr9	114296018:114296145:114296540:114296633:114338644:114340124,	114296541	114296633	114296583	114296583	Nonsense_Mutation	G	A	p.W224*
SARC	TCGA-DX-A8BP-01	SIGLEC8	ENST00000321424.3	chr19	51960437:51960485:51960714:51960993:51961187:51961706,	51960715	51960993	51960875	51960875	Nonsense_Mutation	C	T	p.W191*
SARC	TCGA-DX-A8BP-01	PHC1	ENST00000433847.2,ENST00000544539.1,ENST00000539063.1,ENST00000536844.1,ENST00000540574.1,ENST00000543824.1,ENST00000538657.1,ENST00000544916.1	chr12	9070250:9070387:9072351:9072462:9073580:9073661,	9072352	9072462	9072388	9072388	Nonsense_Mutation	C	T	p.Q51*
SARC	TCGA-DX-A8BP-01	PHC1	ENST00000541181.1	chr12	9070250:9070387:9072351:9072513:9073580:9073661,	9072352	9072513	9072388	9072388	Nonsense_Mutation	C	T	p.Q51*
SARC	TCGA-DX-A8BP-01	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157738203:157738491:157739655:157739940:157740198:157740456,	157739656	157739940	157739747	157739747	Nonsense_Mutation	C	T	p.W168*
SARC	TCGA-DX-A8BP-01	MFN1	ENST00000357390.4,ENST00000263969.5,ENST00000471841.1,ENST00000474903.1,ENST00000280653.7	chr3	179104220:179104417:179107791:179107926:179109768:179110284,	179107792	179107926	179107859	179107859	Nonsense_Mutation	G	T	p.E694*
SARC	TCGA-DX-A8BP-01	HRASLS5	ENST00000540857.1,ENST00000539221.1,ENST00000538712.1,ENST00000301790.4	chr11	63233631:63233844:63235828:63235937:63258358:63258411,63233631:63233844:63235828:63235937:63256342:63256448,	63235829	63235937	63235916	63235916	Nonsense_Mutation	C	A	p.G123*
SARC	TCGA-DX-A3UD-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939418	76939418	Nonsense_Mutation	G	A	p.R444*
SARC	TCGA-FX-A3RE-01	MTMR3	ENST00000401950.2,ENST00000333027.3,ENST00000406629.1,ENST00000351488.3,ENST00000323630.5	chr22	30384468:30384551:30387492:30387659:30394749:30394846,	30387493	30387659	30387566	30387566	Nonsense_Mutation	A	T	p.K123*
SARC	TCGA-DX-A48V-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000577827.1,ENST00000400060.4	chr18	8379164:8379338:8380293:8380425:8384558:8384684,	8380294	8380425	8380423	8380423	Nonsense_Mutation	C	T	p.Q1293*
SARC	TCGA-X6-A7WA-01	GTF2IRD1	ENST00000424337.2,ENST00000265755.3,ENST00000476977.1,ENST00000470715.1,ENST00000455841.2	chr7	73973956:73973985:74004179:74004257:74005153:74005346,	74004180	74004257	74004248	74004248	Nonsense_Mutation	G	T	p.E797*
SARC	TCGA-X6-A7WA-01	CCDC181	ENST00000545005.1,ENST00000491570.1,ENST00000367805.3,ENST00000367806.3	chr1	169388250:169388397:169390600:169391551:169394048:169394168,	169390601	169391551	169390824	169390824	Nonsense_Mutation	G	T	p.S282*
SARC	TCGA-IE-A6BZ-01	TEX26	ENST00000531960.1,ENST00000380473.3	chr13	31531094:31531166:31540358:31540535:31543021:31543183,	31540359	31540535	31540496	31540496	Nonsense_Mutation	G	T	p.G203*
SARC	TCGA-IE-A6BZ-01	SCRN3	ENST00000437944.1,ENST00000272732.6,ENST00000409673.3,ENST00000548868.1,ENST00000490927.1	chr2	175275071:175275231:175287612:175287775:175289202:175289298,175268830:175269043:175287612:175287775:175289202:175289298,	175287613	175287775	175287648	175287648	Nonsense_Mutation	C	T	p.R264*
SARC	TCGA-IE-A6BZ-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76393528:76393671:76395312:76395745:76397700:76398009,	76395313	76395745	76395653	76395653	Nonsense_Mutation	A	T	p.K902*
SARC	TCGA-X6-A7WB-01	GIT1	ENST00000579937.1,ENST00000394869.3,ENST00000579536.1,ENST00000225394.3,ENST00000581348.1	chr17	27908355:27908398:27908759:27908854:27908944:27909162,	27908760	27908854	27908812	27908812	Nonsense_Mutation	G	T	p.C222*
SARC	TCGA-X6-A7WB-01	RNF144A	ENST00000320892.6,ENST00000416587.1	chr2	7081078:7081278:7137046:7137192:7154584:7154614,	7137047	7137192	7137145	7137145	Nonsense_Mutation	G	T	p.E30*
SARC	TCGA-X6-A7WB-01	OAS3	ENST00000228928.7	chr12	113376350:113376512:113382280:113382456:113384547:113384784,113379452:113379657:113382280:113382456:113384547:113384784,	113382281	113382456	113382355	113382355	Nonsense_Mutation	G	T	p.E179*
SARC	TCGA-X6-A7WB-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5755511:5755660:5757990:5758089:5785278:5785491,	5757991	5758089	5758066	5758066	Nonsense_Mutation	G	T	p.E514*
SARC	TCGA-N1-A6IA-01	IRF6	ENST00000542854.1	chr1	209968634:209968763:209969692:209969897:209974584:209974761,209968634:209968763:209969692:209969897:209979291:209979389,	209969693	209969897	209969876	209969876	Nonsense_Mutation	T	A	p.K66*
SARC	TCGA-DX-A3M2-01	SPHK2	ENST00000601712.1	chr19	49123658:49123810:49129206:49129619:49130948:49131098,	49129207	49129619	49129289	49129289	Nonsense_Mutation	C	T	p.R123*
SARC	TCGA-DX-A3M2-01	SPHK2	ENST00000598088.1,ENST00000245222.4,ENST00000340932.3	chr19	49123771:49123810:49129147:49129619:49130948:49131098,	49129148	49129619	49129289	49129289	Nonsense_Mutation	C	T	p.R123*
SARC	TCGA-DX-A48N-01	SPARCL1	ENST00000282470.6,ENST00000503414.1,ENST00000418378.1	chr4	88401523:88401672:88403575:88403712:88411424:88411545,	88403576	88403712	88403635	88403635	Nonsense_Mutation	G	A	p.Q537*
SARC	TCGA-X6-A8C2-01	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148926997:148927171:148927953:148928166:148930237:148930485,	148927954	148928166	148928119	148928119	Nonsense_Mutation	T	A	p.K148*
SARC	TCGA-X6-A8C2-01	APOB	ENST00000399256.4	chr2	21247041:21247748:21247836:21247996:21249659:21249836,	21247837	21247996	21247913	21247913	Nonsense_Mutation	G	T	p.Y776*
SARC	TCGA-X6-A8C2-01	APOB	ENST00000233242.1	chr2	21246396:21246564:21247804:21247996:21249659:21249836,	21247805	21247996	21247913	21247913	Nonsense_Mutation	G	T	p.Y776*
SARC	TCGA-X9-A973-01	RARB	ENST00000462272.1	chr3	25622036:25622213:25635131:25635198:25636010:25636169,	25635132	25635198	25635144	25635144	Nonsense_Mutation	G	T	p.E313*
SARC	TCGA-X9-A973-01	RARB	ENST00000479097.1,ENST00000458646.1,ENST00000437042.2,ENST00000330688.4,ENST00000404969.1,ENST00000383772.4	chr3	25622036:25622213:25634993:25635198:25636010:25636169,	25634994	25635198	25635144	25635144	Nonsense_Mutation	G	T	p.E313*
SARC	TCGA-LI-A9QH-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	124985673:124985752:124987389:124987546:124988137:124988324,	124987390	124987546	124987395	124987395	Nonsense_Mutation	C	T	p.Q178*
SARC	TCGA-DX-A8BM-01	CCDC93	ENST00000319432.5,ENST00000437999.1,ENST00000376300.2	chr2	118677880:118677972:118688612:118688726:118693070:118693155,	118688613	118688726	118688640	118688640	Nonsense_Mutation	G	T	p.Y605*
SARC	TCGA-DX-A8BJ-01	CEP78	ENST00000536374.1,ENST00000424347.2,ENST00000415759.2,ENST00000376598.2,ENST00000376597.4,ENST00000277082.5	chr9	80858377:80858552:80861584:80861698:80863206:80863271,	80861585	80861698	80861647	80861647	Nonsense_Mutation	G	T	p.E281*
SARC	TCGA-IF-A4AK-01	ADAMTS17	ENST00000378898.4,ENST00000268070.4	chr15	100695384:100695525:100739522:100739628:100794340:100794384,	100739523	100739628	100739618	100739618	Nonsense_Mutation	G	T	p.Y362*
SARC	TCGA-QQ-A5V9-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8154428:8154554:8154777:8154843:8154982:8155117,	8154778	8154843	8154784	8154784	Nonsense_Mutation	G	A	p.R2082*
SARC	TCGA-QQ-A5V9-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577046	7577046	Nonsense_Mutation	C	A	p.E298*
SARC	TCGA-K1-A42X-01	KANSL1	ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1	chr17	44116024:44116052:44116392:44116581:44117067:44117250,	44116393	44116581	44116420	44116420	Nonsense_Mutation	G	A	p.R789*
SARC	TCGA-K1-A42X-01	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3545994:3546079:3553377:3553598:3556473:3556595,	3553378	3553598	3553526	3553526	Nonsense_Mutation	C	T	p.Q674*
SARC	TCGA-K1-A42X-02	KANSL1	ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1	chr17	44116024:44116052:44116392:44116581:44117067:44117250,	44116393	44116581	44116420	44116420	Nonsense_Mutation	G	A	p.R789*
SARC	TCGA-K1-A42X-02	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3545994:3546079:3553377:3553598:3556473:3556595,	3553378	3553598	3553526	3553526	Nonsense_Mutation	C	T	p.Q674*
SARC	TCGA-DX-A6B8-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937411	76937411	Nonsense_Mutation	C	A	p.E1113*
SARC	TCGA-HB-A43Z-01	EFTUD2	ENST00000589769.1,ENST00000590977.1	chr17	42929077:42929185:42929776:42929930:42930663:42930758,42929077:42929185:42929776:42929930:42930884:42931003,	42929777	42929930	42929917	42929917	Nonsense_Mutation	G	A	p.Q859*
SARC	TCGA-DX-AB2X-01	RET	ENST00000340058.5,ENST00000355710.3	chr10	43613820:43613928:43614978:43615193:43615528:43615651,	43614979	43615193	43615162	43615162	Nonsense_Mutation	C	A	p.S859*
SARC	TCGA-DX-AB2X-01	PASK	ENST00000405260.1,ENST00000544142.1,ENST00000234040.4,ENST00000539818.1	chr2	242051654:242051854:242054457:242054592:242054702:242054828,	242054458	242054592	242054559	242054559	Nonsense_Mutation	G	A	p.Q1078*
SARC	TCGA-DX-AB2X-01	PASK	ENST00000358649.4	chr2	242051654:242051854:242054436:242054592:242054702:242054828,	242054437	242054592	242054559	242054559	Nonsense_Mutation	G	A	p.Q1078*
SARC	TCGA-QC-A6FX-01	NOTUM	ENST00000409678.3,ENST00000425009.1,ENST00000477214.1	chr17	79916210:79916269:79916810:79916871:79917346:79917442,	79916811	79916871	79916829	79916829	Nonsense_Mutation	C	T	p.W172*
SARC	TCGA-3B-A9HX-01	SULF1	ENST00000260128.4,ENST00000528783.1,ENST00000419716.3,ENST00000529134.1,ENST00000402687.4,ENST00000458141.2	chr8	70475773:70475846:70476150:70476382:70488204:70488262,	70476151	70476382	70476322	70476322	Nonsense_Mutation	C	T	p.R38*
SARC	TCGA-DX-A7ES-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323062	59323062	Nonsense_Mutation	T	G	p.L14*
SARC	TCGA-FX-A3NK-01	SLC31A2	ENST00000259392.3	chr9	115920006:115920073:115923788:115923978:115925028:115925200,	115923789	115923978	115923945	115923945	Nonsense_Mutation	C	G	p.S77*
SARC	TCGA-3B-A9I1-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938581	76938581	Nonsense_Mutation	C	A	p.E723*
SARC	TCGA-DX-A7ER-01	ACOX2	ENST00000489472.1	chr3	58512231:58512383:58514520:58514683:58516977:58517093,	58514521	58514683	58514611	58514611	Nonsense_Mutation	A	C	p.Y355*
SARC	TCGA-3B-A9I0-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208842214	208842214	Nonsense_Mutation	G	T	p.S236*
SARC	TCGA-3B-A9HL-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
SARC	TCGA-WK-A8Y0-01	FCRL1	ENST00000368176.3,ENST00000358292.3,ENST00000491942.1,ENST00000368175.3	chr1	157772404:157772454:157773634:157773901:157776891:157776912,	157773635	157773901	157773706	157773706	Nonsense_Mutation	G	T	p.S83*
SARC	TCGA-X6-A8C4-01	C3	ENST00000599668.1,ENST00000599899.1,ENST00000245907.6	chr19	6677877:6678034:6678162:6678298:6678382:6678466,	6678163	6678298	6678243	6678243	Nonsense_Mutation	G	T	p.C1590*
SARC	TCGA-DX-A23R-01	INPP5B	ENST00000458109.2	chr1	38341277:38341388:38343859:38344164:38345756:38345866,	38343860	38344164	38343971	38343971	Nonsense_Mutation	C	T	p.W602*
SARC	TCGA-DX-A23R-01	INPP5B	ENST00000373026.1,ENST00000373023.2,ENST00000373027.1,ENST00000373024.3	chr1	38341277:38341388:38343859:38343995:38345756:38345866,	38343860	38343995	38343971	38343971	Nonsense_Mutation	C	T	p.W602*
SARC	TCGA-SI-A71Q-01	CASC3	ENST00000577605.1,ENST00000264645.7	chr17	38323750:38323865:38324102:38324201:38324455:38324508,	38324103	38324201	38324174	38324174	Nonsense_Mutation	C	T	p.Q575*
SARC	TCGA-DX-A6YS-01	LRRC28	ENST00000447360.2	chr15	99892573:99892676:99901540:99901716:99926234:99926240,	99901541	99901716	99901566	99901566	Nonsense_Mutation	G	T	p.E241*
SARC	TCGA-DX-A1KY-01	FBLN7	ENST00000441565.1,ENST00000409903.1,ENST00000331203.2	chr2	112933290:112933416:112939315:112939453:112940367:112940505,	112939316	112939453	112939405	112939405	Nonsense_Mutation	G	T	p.E208*
SARC	TCGA-KD-A5QT-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000524495.1,ENST00000530582.1,ENST00000533792.1	chr11	7663609:7663657:7669617:7669768:7670030:7670142,	7669618	7669768	7669673	7669673	Nonsense_Mutation	G	T	p.E568*
SARC	TCGA-HB-A5W3-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579415	7579415	Nonsense_Mutation	C	T	p.W91*
SARC	TCGA-KF-A41W-01	STK32C	ENST00000298630.3	chr10	134041480:134041632:134059403:134059459:134121075:134121444,	134059404	134059459	134059421	134059421	Nonsense_Mutation	T	A	p.K114*
SARC	TCGA-DX-AB3A-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937678	76937678	Nonsense_Mutation	C	A	p.E1024*
SARC	TCGA-DX-AB2E-01	ADH7	ENST00000437033.2,ENST00000482593.1,ENST00000476959.1,ENST00000209665.4	chr4	100336634:100336773:100340142:100340278:100341689:100341950,	100340143	100340278	100340163	100340163	Nonsense_Mutation	C	T	p.W314*
SARC	TCGA-DX-AB2E-01	ANK3	ENST00000280772.2,ENST00000503366.1,ENST00000373827.2	chr10	61946472:61946670:61955902:61956001:61956284:61956383,	61955903	61956001	61955932	61955932	Nonsense_Mutation	G	A	p.Q620*
SARC	TCGA-DX-AB2E-01	PIGT	ENST00000535404.1,ENST00000372689.5	chr20	44044822:44044983:44045156:44045334:44047934:44048035,44044822:44044983:44045156:44045334:44047491:44047619,	44045157	44045334	44045318	44045318	Nonsense_Mutation	C	T	p.Q117*
SARC	TCGA-DX-AB2E-01	TSGA10	ENST00000539964.1,ENST00000393483.3,ENST00000355053.4,ENST00000410001.1	chr2	99614659:99614684:99634662:99634812:99634998:99635103,	99634663	99634812	99634676	99634676	Nonsense_Mutation	G	A	p.R687*
SARC	TCGA-DX-AB2E-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
SARC	TCGA-DX-AB2E-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680328	18680328	Nonsense_Mutation	G	A	p.W385*
SARC	TCGA-DX-AB2E-01	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1	chrX	41205757:41205875:41206111:41206265:41206564:41206704,	41206112	41206265	41206163	41206163	Nonsense_Mutation	T	A	p.L556*
SARC	TCGA-DX-AB2E-01	GPATCH2L	ENST00000312858.5,ENST00000554125.1,ENST00000261530.7	chr14	76618278:76618334:76620696:76621368:76633005:76633070,	76620697	76621368	76620781	76620781	Nonsense_Mutation	G	A	p.W25*
SARC	TCGA-DX-AB2E-01	APOBEC3B	ENST00000402182.3,ENST00000333467.3,ENST00000335760.5	chr22	39378413:39378475:39380079:39380236:39381816:39382096,	39380080	39380236	39380212	39380212	Nonsense_Mutation	G	A	p.W50*
SARC	TCGA-DX-AB2E-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169492434:169492590:169493038:169493142:169494074:169494146,	169493039	169493142	169493088	169493088	Nonsense_Mutation	C	T	p.W1953*
SARC	TCGA-DX-AB32-01	SLC5A11	ENST00000449109.2,ENST00000569071.1	chr16	24888578:24888684:24895371:24895452:24902189:24902323,24888578:24888684:24895371:24895452:24909294:24909430,	24895372	24895452	24895407	24895407	Nonsense_Mutation	C	T	p.Q207*
SARC	TCGA-DX-AB32-01	DPYD	ENST00000370192.3,ENST00000306031.5	chr1	98205947:98206035:98293669:98293752:98348819:98348930,	98293670	98293752	98293695	98293695	Nonsense_Mutation	G	A	p.R70*
SARC	TCGA-DX-AB32-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601155	28601155	Nonsense_Mutation	G	A	p.R236*
SARC	TCGA-DX-AB32-01	KIFAP3	ENST00000538366.1	chr1	170015852:170016007:170024445:170024577:170043576:170043729,	170024446	170024577	170024465	170024465	Nonsense_Mutation	G	A	p.R9*
SARC	TCGA-DX-A7EU-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967356	Nonsense_Mutation	T	A	p.L28*
SARC	TCGA-SG-A849-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76530705:76530818:76532366:76532545:76539438:76539633,	76532367	76532545	76532464	76532464	Nonsense_Mutation	G	A	p.R149*
SARC	TCGA-SG-A849-01	LMAN1L	ENST00000379709.3,ENST00000470711.2,ENST00000309664.5,ENST00000562810.1	chr15	75108497:75108652:75108767:75108875:75108972:75108993,	75108768	75108875	75108829	75108829	Nonsense_Mutation	G	A	p.W131*
SARC	TCGA-PC-A5DN-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626245	82626245	Nonsense_Mutation	G	A	p.R130*
SARC	TCGA-IS-A3K8-01	ARRB1	ENST00000360025.3,ENST00000393505.4,ENST00000420843.2	chr11	74977159:74977318:74978695:74978747:74979932:74980003,	74978696	74978747	74978736	74978736	Nonsense_Mutation	C	A	p.E369*
SARC	TCGA-Z4-A8JB-01	ZDHHC6	ENST00000369404.3,ENST00000369405.3	chr10	114192997:114193039:114194054:114194222:114198093:114198147,	114194055	114194222	114194138	114194138	Nonsense_Mutation	G	A	p.Q274*
SARC	TCGA-DX-AB2Q-01	APMAP	ENST00000217456.2	chr20	24945010:24945034:24949527:24949720:24950161:24950296,24944529:24944658:24949527:24949720:24950161:24950296,	24949528	24949720	24949549	24949549	Nonsense_Mutation	C	T	p.W340*
SARC	TCGA-QQ-A5VD-01	SURF2	ENST00000371964.4	chr9	136223923:136224058:136224586:136224690:136226825:136226900,136223789:136223944:136224586:136224690:136226825:136226900,	136224587	136224690	136224672	136224672	Nonsense_Mutation	C	T	p.Q107*
SARC	TCGA-QQ-A5VD-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557733	210557733	Nonsense_Mutation	T	A	p.L280*
SARC	TCGA-QQ-A5VD-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557733	210557733	Nonsense_Mutation	T	A	p.L280*
SARC	TCGA-QQ-A5VD-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000216487.7	chr14	93107582:93107674:93117926:93119420:93125505:93125814,	93117927	93119420	93119342	93119342	Nonsense_Mutation	C	T	p.Q650*
SARC	TCGA-QQ-A5VD-01	WNT7B	ENST00000409496.3	chr22	46327175:46327249:46345799:46346026:46372563:46372685,46327175:46327249:46345799:46346026:46368034:46368595,	46345800	46346026	46345806	46345806	Nonsense_Mutation	G	A	p.R98*
SARC	TCGA-QQ-A5VD-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44921430:44921586:44925702:44925835:44941063:44941209,	44925703	44925835	44925817	44925817	Nonsense_Mutation	G	A	p.Q541*
SARC	TCGA-QQ-A5VD-01	PPP2R5C	ENST00000445439.3,ENST00000334743.5,ENST00000557095.1,ENST00000328724.5,ENST00000557268.1,ENST00000556218.1,ENST00000557716.2,ENST00000554137.1,ENST00000350249.3,ENST00000422945.2	chr14	102356573:102356633:102359336:102359445:102360843:102360854,	102359337	102359445	102359443	102359443	Nonsense_Mutation	C	T	p.Q297*
SARC	TCGA-DX-AB35-01	HSD17B6	ENST00000555805.1,ENST00000554643.1,ENST00000554150.1,ENST00000322165.1	chr12	57157107:57157198:57167617:57167949:57175757:57175808,	57167618	57167949	57167823	57167823	Nonsense_Mutation	G	T	p.E63*
SARC	TCGA-DX-A3U7-01	C19orf57	ENST00000346736.2,ENST00000454313.1,ENST00000586783.1	chr19	13996773:13996868:14000000:14001275:14003598:14003703,	14000001	14001275	14000051	14000051	Nonsense_Mutation	G	A	p.Q540*
SARC	TCGA-DX-A8BT-01	FHL5	ENST00000541107.1,ENST00000450218.1,ENST00000326771.2	chr6	97051477:97051648:97052625:97052800:97053777:97053947,	97052626	97052800	97052755	97052755	Nonsense_Mutation	G	T	p.E97*
SARC	TCGA-DX-A8BT-01	JAKMIP3	ENST00000477275.1,ENST00000298622.4	chr10	133967416:133967494:133976712:133976916:133978173:133978239,	133976713	133976916	133976911	133976911	Nonsense_Mutation	C	T	p.Q805*
SARC	TCGA-DX-A8BT-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357503	50357503	Nonsense_Mutation	C	A	p.E480*
SARC	TCGA-DX-A8BT-01	NME9	ENST00000536478.1,ENST00000478220.1,ENST00000474690.1,ENST00000317876.4,ENST00000383180.2,ENST00000492993.1	chr3	138034368:138034485:138036989:138037061:138038319:138038422,138033173:138033249:138036989:138037061:138038319:138038422,	138036990	138037061	138037031	138037031	Nonsense_Mutation	T	A	p.K54*
SARC	TCGA-DX-A8BT-01	TENM4	ENST00000533525.1	chr11	78482036:78482183:78497942:78498128:78516336:78516456,	78497943	78498128	78497988	78497988	Nonsense_Mutation	T	A	p.K774*
SARC	TCGA-DX-A48U-01	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000377653.2,ENST00000358144.2	chr9	39177314:39177499:39178153:39178357:39193124:39193272,	39178154	39178357	39178156	39178156	Nonsense_Mutation	G	C	p.S247*
SARC	TCGA-K1-A3PN-01	LTBP4	ENST00000597816.1,ENST00000599724.1,ENST00000318809.7	chr19	41120220:41120352:41125251:41125398:41128305:41128310,41120220:41120352:41125251:41125398:41129508:41129538,	41125252	41125398	41125334	41125334	Nonsense_Mutation	C	A	p.C1117*
SARC	TCGA-DX-AB2O-01	GOLGA1	ENST00000485337.1,ENST00000373555.4,ENST00000475407.1	chr9	127652667:127652757:127660827:127660923:127661607:127661712,	127660828	127660923	127660878	127660878	Nonsense_Mutation	C	A	p.E453*
SARC	TCGA-DX-A6BF-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000188403.7	chr12	100904555:100904921:100926235:100926376:100928667:100928801,	100926236	100926376	100926316	100926316	Nonsense_Mutation	C	T	p.R176*
SARC	TCGA-DX-A6BF-01	NR1H4	ENST00000551379.1,ENST00000392986.3	chr12	100904555:100904921:100926235:100926388:100928667:100928801,	100926236	100926388	100926316	100926316	Nonsense_Mutation	C	T	p.R176*
SARC	TCGA-DX-A6YT-01	RGS6	ENST00000434263.2,ENST00000556437.1,ENST00000553530.1,ENST00000555571.1,ENST00000404301.2,ENST00000402788.2,ENST00000406236.4,ENST00000554474.1,ENST00000407322.4,ENST00000554782.1,ENST00000553525.1,ENST00000355512.6	chr14	72961859:72961970:72976861:72976987:72985058:72985245,	72976862	72976987	72976950	72976950	Nonsense_Mutation	C	T	p.R352*
SARC	TCGA-DX-AB2E-01	ADH7	ENST00000437033.2,ENST00000482593.1,ENST00000476959.1,ENST00000209665.4	chr4	100336634:100336773:100340142:100340278:100341689:100341950,	100340143	100340278	100340163	100340163	Nonsense_Mutation	C	T	p.W326*
SARC	TCGA-DX-A23Y-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937963	76937963	Nonsense_Mutation	G	A	p.Q929*
SARC	TCGA-X9-A973-01	CTRB1	ENST00000361017.4,ENST00000495583.1	chr16	75256866:75256946:75257038:75257117:75257345:75257505,	75257039	75257117	75257097	75257097	Nonsense_Mutation	C	T	p.Q99*
SARC	TCGA-FX-A2QS-01	DIS3L	ENST00000532580.1,ENST00000565281.1,ENST00000564909.1,ENST00000319194.5,ENST00000530615.1,ENST00000319212.4	chr15	66587434:66587479:66599161:66599290:66601046:66601165,	66599162	66599290	66599178	66599178	Nonsense_Mutation	C	T	p.R104*
SARC	TCGA-FX-A2QS-01	DIS3L	ENST00000525109.1	chr15	66587434:66587479:66599099:66599290:66601046:66601165,	66599100	66599290	66599178	66599178	Nonsense_Mutation	C	T	p.R104*
SARC	TCGA-DX-AB2E-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169492434:169492590:169493038:169493142:169494074:169494146,	169493039	169493142	169493088	169493088	Nonsense_Mutation	C	T	p.W1948*
SARC	TCGA-DX-A8BP-01	HRASLS5	ENST00000540857.1,ENST00000539221.1,ENST00000538712.1,ENST00000301790.4	chr11	63233631:63233844:63235828:63235937:63258358:63258411,63233631:63233844:63235828:63235937:63256342:63256448,	63235829	63235937	63235916	63235916	Nonsense_Mutation	C	A	p.G133*
SARC	TCGA-DX-A6YQ-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130408572:130408851:130408972:130409260:130409451:130409739,	130408973	130409260	130409008	130409008	Nonsense_Mutation	G	T	p.S1151*
SARC	TCGA-DX-AB32-01	KIFAP3	ENST00000538366.1	chr1	170015852:170016007:170024445:170024577:170043576:170043729,	170024446	170024577	170024465	170024465	Nonsense_Mutation	G	A	p.R49*
SARC	TCGA-DX-A8BM-01	LILRB4	ENST00000430952.2	chr19	55178147:55178200:55179088:55179244:55179323:55179844,	55179089	55179244	55179188	55179188	Nonsense_Mutation	G	T	p.E382*
SARC	TCGA-DX-A8BM-01	LILRB4	ENST00000391736.1,ENST00000391733.3,ENST00000270452.2	chr19	55178147:55178200:55179085:55179244:55179323:55179844,	55179086	55179244	55179188	55179188	Nonsense_Mutation	G	T	p.E382*
SARC	TCGA-DX-A3LS-01	METTL1	ENST00000324871.7,ENST00000553125.1	chr12	58163362:58163461:58163554:58163739:58165756:58165859,58163362:58163461:58163554:58163739:58164876:58165040,	58163555	58163739	58163564	58163564	Nonsense_Mutation	G	C	p.Y150*
SARC	TCGA-DX-A8BT-01	NME9	ENST00000536478.1,ENST00000478220.1,ENST00000474690.1,ENST00000317876.4,ENST00000383180.2,ENST00000492993.1	chr3	138034368:138034485:138036989:138037061:138038319:138038422,138033173:138033249:138036989:138037061:138038319:138038422,	138036990	138037061	138037031	138037031	Nonsense_Mutation	T	A	p.K76*
SARC	TCGA-DX-A6BF-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000188403.7	chr12	100904555:100904921:100926235:100926376:100928667:100928801,	100926236	100926376	100926316	100926316	Nonsense_Mutation	C	T	p.R186*
SARC	TCGA-DX-A6BF-01	NR1H4	ENST00000551379.1,ENST00000392986.3	chr12	100904555:100904921:100926235:100926388:100928667:100928801,	100926236	100926388	100926316	100926316	Nonsense_Mutation	C	T	p.R186*
SARC	TCGA-SG-A6Z7-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288732	151288732	Nonsense_Mutation	C	A	p.E88*
SARC	TCGA-MB-A8JK-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48736418:48736557:48739216:48739422:48740728:48740908,	48739217	48739422	48739410	48739410	Nonsense_Mutation	G	A	p.Q2863*
SARC	TCGA-IF-A4AJ-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953730	48953730	Nonsense_Mutation	C	T	p.R445*
SARC	TCGA-DX-AB2E-01	SLC6A18	ENST00000324642.3	chr5	1244328:1244488:1244722:1244882:1245962:1246304,	1244723	1244882	1244846	1244846	Nonsense_Mutation	G	A	p.W540*
SARC	TCGA-FX-A8OO-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806526	33806526	Nonsense_Mutation	G	A	p.R266*
SARC	TCGA-DX-A240-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56565177:56565216:56565462:56565721:56566211:56566274,	56565463	56565721	56565571	56565571	Nonsense_Mutation	G	A	p.Q662*
SARC	TCGA-HB-A2OT-01	TEAD4	ENST00000543035.1,ENST00000359864.2,ENST00000397122.2	chr12	3120209:3120234:3121335:3121398:3126563:3126692,	3121336	3121398	3121377	3121377	Nonsense_Mutation	C	T	p.R90*
SARC	TCGA-DX-AB2W-01	TNK2	ENST00000381916.2,ENST00000481865.1,ENST00000392400.1,ENST00000316664.3,ENST00000428187.1,ENST00000439230.1,ENST00000438207.1,ENST00000333602.6	chr3	195605992:195606046:195608921:195609199:195609315:195609398,195605992:195606046:195608921:195609199:195610027:195610180,	195608922	195609199	195609097	195609097	Nonsense_Mutation	C	A	p.E301*
SARC	TCGA-DX-AB32-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055130	66055130	Nonsense_Mutation	G	A	p.Q52*
SARC	TCGA-DX-AATS-01	ADSSL1	ENST00000555486.1,ENST00000557582.1,ENST00000332972.5,ENST00000553540.1,ENST00000330877.2	chr14	105207175:105207257:105207453:105207580:105208184:105208338,	105207454	105207580	105207463	105207463	Nonsense_Mutation	G	T	p.E269*
SARC	TCGA-DX-A6BK-01	CPNE1	ENST00000439669.1	chr20	34219866:34219947:34220084:34220170:34220232:34220307,	34220085	34220170	34220147	34220147	Nonsense_Mutation	G	A	p.Q137*
SARC	TCGA-DX-A6BK-01	CPNE1	ENST00000317677.5,ENST00000414664.1,ENST00000401607.2,ENST00000420363.1,ENST00000434795.1,ENST00000397442.1,ENST00000317619.3,ENST00000352393.4,ENST00000439806.2,ENST00000483495.1,ENST00000440240.1,ENST00000397446.1,ENST00000397443.1,ENST00000437340.1,ENST00000397445.1	chr20	34219866:34219947:34220084:34220156:34220232:34220307,	34220085	34220156	34220147	34220147	Nonsense_Mutation	G	A	p.Q137*
SARC	TCGA-X6-A8C5-01	CROCC	ENST00000375541.5,ENST00000445545.2,ENST00000467938.1	chr1	17257785:17257892:17263131:17263368:17264135:17264232,	17263132	17263368	17263172	17263172	Nonsense_Mutation	C	T	p.R333*
SARC	TCGA-Z4-A9VC-01	CUL9	ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43153692:43154193:43154697:43154833:43154983:43155177,	43154698	43154833	43154707	43154707	Nonsense_Mutation	C	T	p.Q421*
SARC	TCGA-X6-A8C7-01	DTX1	ENST00000257600.3,ENST00000547974.1	chr12	113531842:113531904:113532593:113532752:113532846:113533008,	113532594	113532752	113532615	113532615	Nonsense_Mutation	C	T	p.R417*
SARC	TCGA-QQ-A8VG-01	FYCO1	ENST00000296137.2,ENST00000535325.1	chr3	46011166:46011257:46014579:46014723:46016730:46016837,	46014580	46014723	46014638	46014638	Nonsense_Mutation	G	A	p.Q161*
SARC	TCGA-QQ-A8VG-01	GPATCH4	ENST00000474904.1	chr1	156566178:156566270:156567591:156567714:156567826:156567913,	156567592	156567714	156567689	156567689	Nonsense_Mutation	A	T	p.C111*
SARC	TCGA-QC-A7B5-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24833274	24833274	Nonsense_Mutation	C	A	p.S1692*
SARC	TCGA-KD-A5QT-01	LILRB4	ENST00000430952.2	chr19	55178147:55178200:55179088:55179244:55179323:55179844,	55179089	55179244	55179128	55179128	Nonsense_Mutation	A	T	p.K362*
SARC	TCGA-KD-A5QT-01	LILRB4	ENST00000391736.1,ENST00000391733.3,ENST00000270452.2	chr19	55178147:55178200:55179085:55179244:55179323:55179844,	55179086	55179244	55179128	55179128	Nonsense_Mutation	A	T	p.K362*
SARC	TCGA-DX-A6YZ-01	PHF20L1	ENST00000220847.7,ENST00000460236.1,ENST00000395390.2,ENST00000395386.2	chr8	133849956:133850056:133851631:133851827:133854759:133855120,	133851632	133851827	133851693	133851693	Nonsense_Mutation	C	A	p.C138*
SARC	TCGA-QQ-A8VG-01	PIN1	ENST00000587625.1,ENST00000247970.4,ENST00000588695.1	chr19	9946044:9946078:9949111:9949324:9958705:9958816,	9949112	9949324	9949265	9949265	Nonsense_Mutation	C	A	p.S71*
SARC	TCGA-PT-A8TR-01A-11D-A37C-09	PPP2R5D	ENST00000485511.1,ENST00000230402.6,ENST00000470467.1,ENST00000472118.1	chr6	42974337:42974417:42974648:42974848:42974933:42975044,	42974649	42974848	42974819	42974819	Nonsense_Mutation	G	T	p.E165*
SARC	TCGA-DX-A48V-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000577827.1,ENST00000400060.4	chr18	8379164:8379338:8380293:8380425:8384558:8384684,	8380294	8380425	8380423	8380423	Nonsense_Mutation	C	T	p.Q1307*
SARC	TCGA-X6-A8C4-01	R3HDM1	ENST00000409606.1,ENST00000264160.4	chr2	136362425:136362586:136373721:136373763:136374237:136374327,	136373722	136373763	136373731	136373731	Nonsense_Mutation	C	T	p.Q61*
SARC	TCGA-QC-A7B5-01	RYR1	ENST00000593322.1,ENST00000359596.3,ENST00000355481.4,ENST00000594335.1,ENST00000360985.3	chr19	39034171:39034300:39034410:39034515:39037084:39037166,	39034411	39034515	39034458	39034458	Nonsense_Mutation	G	A	p.W3985*
SARC	TCGA-QC-A7B5-01	TM4SF1	ENST00000493348.1	chr3	149087284:149087667:149089473:149089654:149093466:149093556,	149089474	149089654	149089530	149089530	Nonsense_Mutation	G	A	p.Q180*
SARC	TCGA-Z4-A8JB-01	TRAPPC12	ENST00000324266.5	chr2	3383490:3383647:3391390:3392441:3405547:3405664,	3391391	3392441	3391677	3391677	Nonsense_Mutation	G	T	p.G95*
SARC	TCGA-3B-A9I1-01	TTI1	ENST00000373447.3,ENST00000373448.2,ENST00000473288.1,ENST00000449821.1	chr20	36624776:36624864:36625150:36625355:36627589:36627730,	36625151	36625355	36625225	36625225	Nonsense_Mutation	G	T	p.S975*
SARC	TCGA-DX-A8BL-01	UVSSA	ENST00000511216.1,ENST00000389851.4,ENST00000507531.1	chr4	1348904:1349033:1360107:1360219:1369151:1369296,	1360108	1360219	1360147	1360147	Nonsense_Mutation	G	T	p.E406*
SARC	TCGA-IE-A4EI-01	VCPKMT	ENST00000395860.2,ENST00000491402.1,ENST00000484763.1	chr14	50576254:50576431:50579332:50579437:50581002:50581122,	50579333	50579437	50579351	50579351	Nonsense_Mutation	G	T	p.Y219*
SARC	TCGA-DX-A48V-01	XAF1	ENST00000575147.1	chr17	6661407:6661543:6663159:6663200:6663724:6663798,	6663160	6663200	6663165	6663165	Nonsense_Mutation	G	A	p.W58*
SARC	TCGA-DX-AATS-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4,ENST00000453771.1	chr1	203807093:203807192:203809433:203809502:203816311:203816815,	203809434	203809502	203809457	203809457	Nonsense_Mutation	G	T	p.E333*
SKCM	TCGA-D3-A2JD-06	CLEC4C	ENST00000542353.1,ENST00000360345.3	chr12	7890024:7890170:7894016:7894127:7898926:7899019,	7894017	7894127	7894077	7894077	Nonsense_Mutation	G	A	p.R28X
SKCM	TCGA-D3-A2JD-06	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27497317:27497475:27499547:27499736:27499874:27499956,	27499548	27499736	27499675	27499675	Nonsense_Mutation	C	T	p.W1191X
SKCM	TCGA-D3-A2JD-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110X
SKCM	TCGA-D3-A2JD-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110X
SKCM	TCGA-EE-A2MU-06	SEMA4G	ENST00000519649.1,ENST00000517724.1,ENST00000521006.1,ENST00000210633.3,ENST00000370250.4	chr10	102739878:102740101:102740334:102740450:102740578:102740677,	102740335	102740450	102740344	102740344	Nonsense_Mutation	G	A	p.W454X
SKCM	TCGA-EE-A2MU-06	GRIP1	ENST00000545666.1,ENST00000540433.1,ENST00000542309.1,ENST00000359742.4,ENST00000538211.1,ENST00000539540.1,ENST00000540854.1,ENST00000536215.1,ENST00000398016.3,ENST00000286445.7	chr12	66911728:66911756:66923610:66923694:66932857:66932888,	66923611	66923694	66923614	66923614	Nonsense_Mutation	G	A	p.R167X
SKCM	TCGA-EE-A2MU-06	LY9	ENST00000368037.5,ENST00000368035.1,ENST00000368040.1,ENST00000263285.6	chr1	160784312:160784551:160786383:160786653:160788007:160788107,	160786384	160786653	160786540	160786540	Nonsense_Mutation	C	G	p.S410X
SKCM	TCGA-EE-A3AG-06	NOD2	ENST00000300589.2	chr16	50750497:50750581:50753835:50753919:50756532:50756616,50750801:50750885:50753835:50753919:50756532:50756616,	50753836	50753919	50753891	50753891	Nonsense_Mutation	C	T	p.R896X
SKCM	TCGA-EE-A3AG-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
SKCM	TCGA-EE-A3AG-06	TLE2	ENST00000591529.1,ENST00000426948.2	chr19	3000644:3000721:3002350:3002501:3005434:3005582,2997921:2997953:3002350:3002501:3005434:3005582,	3002351	3002501	3002402	3002402	Nonsense_Mutation	G	A	p.Q544X
SKCM	TCGA-EE-A3AG-06	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451819	55451819	Nonsense_Mutation	C	T	p.W123X
SKCM	TCGA-EE-A3AG-06	PLA2G4A	ENST00000466600.1	chr1	186876096:186876134:186880379:186880521:186901894:186902031,186876096:186876134:186880379:186880521:186908139:186908362,	186880380	186880521	186880420	186880420	Nonsense_Mutation	C	T	p.Q153X
SKCM	TCGA-EE-A3AG-06	NLRP3	ENST00000336119.3,ENST00000391828.3	chr1	247592886:247593057:247597404:247597575:247607273:247607444,247587148:247588901:247597404:247597575:247607273:247607444,247592886:247593057:247597404:247597575:247599271:247599442,	247597405	247597575	247597405	247597405	Nonsense_Mutation	G	A	p.W774X
SKCM	TCGA-EE-A3AG-06	TMPRSS6	ENST00000406856.1,ENST00000381792.2,ENST00000346753.3,ENST00000406725.1,ENST00000442782.2	chr22	37482322:37482459:37485617:37485822:37491590:37491629,	37485618	37485822	37485790	37485790	Nonsense_Mutation	G	A	p.Q231X
SKCM	TCGA-EE-A3AG-06	EEFSEC	ENST00000254730.6	chr3	127983459:127983624:128060075:128060732:128077059:128077216,	128060076	128060732	128060522	128060522	Nonsense_Mutation	G	A	p.W411X
SKCM	TCGA-EE-A3AG-06	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	49009217:49009343:49019265:49019345:49030645:49030751,	49019266	49019345	49019273	49019273	Nonsense_Mutation	G	A	p.W398X
SKCM	TCGA-EE-A3AG-06	SPATA9	ENST00000477047.2,ENST00000274432.8,ENST00000316087.8	chr5	94999656:94999752:95011115:95011343:95018231:95018320,	95011116	95011343	95011280	95011280	Nonsense_Mutation	G	A	p.R72X
SKCM	TCGA-EE-A3AG-06	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755896	153755896	Nonsense_Mutation	C	T	p.R210X
SKCM	TCGA-EE-A3AG-06	TIMD4	ENST00000274532.2	chr5	156353273:156353323:156375426:156375510:156376661:156376742,	156375427	156375510	156375464	156375464	Nonsense_Mutation	C	T	p.W269X
SKCM	TCGA-EE-A3AG-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124382	12124382	Nonsense_Mutation	C	T	p.Q1452X
SKCM	TCGA-EE-A3AG-06	ADCY1	ENST00000297323.7,ENST00000432715.1	chr7	45614487:45614781:45632357:45632507:45649977:45650096,	45632358	45632507	45632475	45632475	Nonsense_Mutation	C	T	p.R253X
SKCM	TCGA-D9-A3Z4-01	HIF1A	ENST00000323441.6	chr14	62207472:62207906:62211422:62211531:62212408:62212535,62207472:62207906:62211422:62211531:62213651:62214190,	62211423	62211531	62211509	62211509	Nonsense_Mutation	C	G	p.S727X
SKCM	TCGA-ER-A19T-01	NDUFAF2	ENST00000502658.1	chr5	60241161:60241209:60368951:60369041:60448530:60448843,	60368952	60369041	60369037	60369037	Nonsense_Mutation	G	A	p.W71X
SKCM	TCGA-D3-A51R-06	KAZALD1	ENST00000477979.1	chr10	102821829:102821872:102823962:102824178:102824257:102824405,	102823963	102824178	102824051	102824051	Nonsense_Mutation	G	A	p.W182X
SKCM	TCGA-D3-A51R-06	ANO2	ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5674723:5674829:5684999:5685181:5687120:5687173,	5685000	5685181	5685010	5685010	Nonsense_Mutation	G	A	p.Q871X
SKCM	TCGA-D3-A51R-06	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000435379.1,ENST00000538330.1,ENST00000539875.1,ENST00000543219.1,ENST00000318197.6	chr12	18837063:18837213:18841022:18841152:18847843:18847978,	18841023	18841152	18841059	18841059	Nonsense_Mutation	G	A	p.Q519X
SKCM	TCGA-D3-A51R-06	PRC1	ENST00000560914.1,ENST00000394249.3,ENST00000442656.2,ENST00000361188.5,ENST00000559828.1,ENST00000361919.3	chr15	91517814:91517961:91519905:91520001:91522387:91522524,	91519906	91520001	91519980	91519980	Nonsense_Mutation	G	A	p.R377X
SKCM	TCGA-D3-A51R-06	DNAH5	ENST00000265104.4	chr5	13727615:13727765:13729547:13729669:13735239:13735430,	13729548	13729669	13729620	13729620	Nonsense_Mutation	C	T	p.W3937X
SKCM	TCGA-EE-A2MD-06	SLC22A9	ENST00000536333.1	chr11	63149630:63149749:63173968:63174183:63175583:63175692,63149630:63149749:63173968:63174183:63177273:63177430,	63173969	63174183	63174092	63174092	Nonsense_Mutation	G	A	p.W399X
SKCM	TCGA-EE-A2MD-06	ACBD4	ENST00000376955.4	chr17	43215294:43215355:43216387:43216527:43220809:43221217,43215289:43215355:43216387:43216527:43219949:43220326,	43216388	43216527	43216425	43216425	Nonsense_Mutation	G	A	p.W242X
SKCM	TCGA-EE-A2MD-06	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59787207:59787422:59805629:59805741:59811918:59812041,	59805630	59805741	59805663	59805663	Nonsense_Mutation	C	T	p.R79X
SKCM	TCGA-EE-A2MD-06	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071057	197071057	Nonsense_Mutation	G	A	p.R2442X
SKCM	TCGA-EE-A2MD-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103798	168103798	Nonsense_Mutation	C	T	p.Q1744X
SKCM	TCGA-EE-A2MD-06	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828152	121828152	Nonsense_Mutation	G	A	p.W166X
SKCM	TCGA-EE-A2MD-06	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580162	7580162	Nonsense_Mutation	C	T	p.R1247X
SKCM	TCGA-EE-A2MD-06	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000402746.1	chr7	2054140:2054277:2108828:2108973:2188786:2188873,	2108829	2108973	2108855	2108855	Nonsense_Mutation	G	A	p.Q398X
SKCM	TCGA-EE-A2MD-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-EE-A2MD-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-FS-A1ZT-06	VPS54	ENST00000272322.4	chr2	64199299:64199378:64208779:64209021:64210997:64211153,	64208780	64209021	64208967	64208967	Nonsense_Mutation	C	T	p.W64X
SKCM	TCGA-FS-A1ZT-06	VPS54	ENST00000409558.4	chr2	64199299:64199378:64208779:64208985:64210997:64211153,	64208780	64208985	64208967	64208967	Nonsense_Mutation	C	T	p.W64X
SKCM	TCGA-FS-A1ZT-06	SLC12A8	ENST00000483944.1	chr3	124810944:124811042:124826324:124826475:124829032:124829179,	124826325	124826475	124826446	124826446	Nonsense_Mutation	C	T	p.W528X
SKCM	TCGA-FS-A1ZT-06	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1	chr3	124810944:124811042:124826324:124826970:124829032:124829179,	124826325	124826970	124826446	124826446	Nonsense_Mutation	C	T	p.W528X
SKCM	TCGA-FS-A1ZT-06	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157469765	157469765	Nonsense_Mutation	C	G	p.Y840X
SKCM	TCGA-EE-A2MF-06	SMARCC2	ENST00000394023.3	chr12	56557128:56557549:56558086:56558152:56558431:56558515,	56558087	56558152	56558150	56558150	Nonsense_Mutation	G	A	p.Q1107X
SKCM	TCGA-EE-A2MF-06	STAT6	ENST00000554764.1	chr12	57501448:57501526:57501945:57502082:57504892:57505157,57501448:57501526:57501945:57502082:57504911:57504975,57501043:57501097:57501945:57502082:57504911:57504975,	57501946	57502082	57501992	57501992	Nonsense_Mutation	G	A	p.Q24X
SKCM	TCGA-EE-A2MF-06	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634452	70634452	Nonsense_Mutation	G	A	p.Q230X
SKCM	TCGA-EE-A2MF-06	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115400064:115400118:115401167:115401332:115402363:115402431,	115401168	115401332	115401232	115401232	Nonsense_Mutation	G	A	p.W119X
SKCM	TCGA-EE-A2MF-06	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087301	109087301	Nonsense_Mutation	G	T	p.E506X
SKCM	TCGA-EE-A2MF-06	NOP58	ENST00000472050.1,ENST00000264279.5,ENST00000488403.1,ENST00000492688.1	chr2	203139884:203139912:203142672:203142725:203147073:203147195,	203142673	203142725	203142701	203142701	Nonsense_Mutation	C	T	p.Q51X
SKCM	TCGA-EE-A2MF-06	BRPF3	ENST00000357641.6,ENST00000339717.7,ENST00000449261.2,ENST00000534400.1,ENST00000441123.1,ENST00000532330.1,ENST00000534694.1,ENST00000543502.1,ENST00000443324.2	chr6	36168182:36169547:36172434:36172591:36175089:36175125,	36172435	36172591	36172574	36172574	Nonsense_Mutation	C	T	p.Q530X
SKCM	TCGA-GN-A262-06	TRMT1	ENST00000592814.1,ENST00000592062.1,ENST00000437766.1,ENST00000357720.4,ENST00000221504.8,ENST00000593157.1	chr19	13226440:13226582:13226810:13226866:13226959:13227154,	13226811	13226866	13226814	13226814	Nonsense_Mutation	G	A	p.Q103X
SKCM	TCGA-GN-A262-06	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220161931:220162165:220170324:220170684:220174479:220174597,	220170325	220170684	220170519	220170519	Nonsense_Mutation	G	A	p.Q783X
SKCM	TCGA-ER-A19B-06	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351586	71351586	Nonsense_Mutation	C	T	p.W43X
SKCM	TCGA-EE-A2MN-06	NRP1	ENST00000395995.1,ENST00000374867.2,ENST00000374875.1,ENST00000265371.4	chr10	33475144:33475416:33481208:33481346:33486577:33486637,	33481209	33481346	33481310	33481310	Nonsense_Mutation	C	T	p.W647X
SKCM	TCGA-EE-A2MN-06	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098526	47098526	Nonsense_Mutation	G	A	p.Q2250X
SKCM	TCGA-EE-A2MN-06	PNPLA7	ENST00000406427.1,ENST00000371457.1,ENST00000434090.1,ENST00000277531.4,ENST00000469998.1	chr9	140356630:140356783:140357136:140357285:140357866:140357983,	140357137	140357285	140357203	140357203	Nonsense_Mutation	A	T	p.Y1117X
SKCM	TCGA-EE-A20C-06	CLYBL	ENST00000444838.2,ENST00000376355.3,ENST00000376354.1	chr13	100511114:100511303:100517071:100517165:100518493:100518661,	100517072	100517165	100517153	100517153	Nonsense_Mutation	C	T	p.R208X
SKCM	TCGA-EE-A20C-06	CORO1A	ENST00000563778.1,ENST00000561815.1,ENST00000219150.5,ENST00000569970.1,ENST00000568763.1,ENST00000565497.1,ENST00000570045.1	chr16	30196529:30196728:30198136:30198266:30198359:30198404,30197918:30198041:30198136:30198266:30198359:30198404,	30198137	30198266	30198142	30198142	Nonsense_Mutation	G	A	p.W109X
SKCM	TCGA-EE-A20C-06	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30740286:30740552:30740690:30740893:30744600:30744770,	30740691	30740893	30740785	30740785	Nonsense_Mutation	C	T	p.Q2007X
SKCM	TCGA-EE-A20C-06	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288341	74288341	Nonsense_Mutation	G	A	p.Q657X
SKCM	TCGA-EE-A20C-06	NOTUM	ENST00000409678.3,ENST00000477214.1	chr17	79913390:79913420:79914525:79914626:79914758:79914950,	79914526	79914626	79914583	79914583	Nonsense_Mutation	G	A	p.Q311X
SKCM	TCGA-EE-A20C-06	APOE	ENST00000446996.1,ENST00000434152.1,ENST00000252486.4,ENST00000425718.1	chr19	45409873:45409924:45411016:45411209:45411789:45411859,	45411017	45411209	45411097	45411097	Nonsense_Mutation	C	T	p.Q42X
SKCM	TCGA-EE-A20C-06	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197059979:197060171:197061036:197061186:197062181:197062391,	197061037	197061186	197061162	197061162	Nonsense_Mutation	G	A	p.R1522X
SKCM	TCGA-EE-A20C-06	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460079	107460079	Nonsense_Mutation	T	A	p.K119X
SKCM	TCGA-EE-A20C-06	ZRANB3	ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	136023103:136023256:136026531:136026711:136029337:136029457,	136026532	136026711	136026661	136026661	Nonsense_Mutation	C	T	p.W419X
SKCM	TCGA-EE-A20C-06	ADH1A	ENST00000209668.2	chr4	100200582:100200721:100201300:100201436:100203502:100203763,	100201301	100201436	100201357	100201357	Nonsense_Mutation	G	T	p.S303X
SKCM	TCGA-EE-A20C-06	TRIML2	ENST00000326754.3,ENST00000511771.1,ENST00000512729.1,ENST00000536972.1	chr4	189020188:189020329:189022209:189022404:189025990:189026086,	189022210	189022404	189022263	189022263	Nonsense_Mutation	G	A	p.Q93X
SKCM	TCGA-EE-A20C-06	DNAH5	ENST00000265104.4	chr5	13727615:13727765:13729547:13729669:13735239:13735430,	13729548	13729669	13729620	13729620	Nonsense_Mutation	C	T	p.W3937X
SKCM	TCGA-EE-A20C-06	ICA1	ENST00000430867.1,ENST00000446305.1,ENST00000265577.7	chr7	8268271:8268303:8272219:8272382:8275539:8275556,	8272220	8272382	8272378	8272378	Nonsense_Mutation	G	A	p.Q9X
SKCM	TCGA-EE-A20C-06	ICA1	ENST00000447326.1,ENST00000407906.1,ENST00000402384.3,ENST00000455539.1,ENST00000457755.1,ENST00000422063.2,ENST00000396675.3,ENST00000406470.2,ENST00000339809.6	chr7	8268271:8268303:8272219:8272385:8275539:8275556,	8272220	8272385	8272378	8272378	Nonsense_Mutation	G	A	p.Q9X
SKCM	TCGA-EE-A20C-06	SLC30A8	ENST00000456015.2,ENST00000518521.1	chr8	118147566:118147637:118159192:118159392:118165182:118165214,	118159193	118159392	118159337	118159337	Nonsense_Mutation	G	A	p.W72X
SKCM	TCGA-EE-A20C-06	ADAMTSL2	ENST00000393061.3,ENST00000354484.4,ENST00000393060.1	chr9	136401833:136401924:136402526:136402669:136403470:136403546,	136402527	136402669	136402603	136402603	Nonsense_Mutation	G	A	p.W56X
SKCM	TCGA-FS-A4FB-06	ANO4	ENST00000392977.3,ENST00000392979.3,ENST00000550015.1,ENST00000299222.9	chr12	101505340:101505488:101510456:101510576:101514297:101514403,	101510457	101510576	101510497	101510497	Nonsense_Mutation	C	T	p.R796X
SKCM	TCGA-FS-A4FB-06	WIPF2	ENST00000585043.1,ENST00000583130.1,ENST00000584296.1,ENST00000323571.4	chr17	38412642:38412774:38416786:38416919:38430041:38430251,38412642:38412774:38416786:38416919:38418776:38418890,	38416787	38416919	38416832	38416832	Nonsense_Mutation	C	T	p.R37X
SKCM	TCGA-FS-A4FB-06	WIPF2	ENST00000582781.1	chr17	38412642:38412774:38416786:38416879:38418776:38418890,	38416787	38416879	38416832	38416832	Nonsense_Mutation	C	T	p.R37X
SKCM	TCGA-BF-A1PV-01	NIN	ENST00000382041.3,ENST00000530997.2,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51192670:51192784:51196240:51196441:51202233:51202335,	51196241	51196441	51196294	51196294	Nonsense_Mutation	G	A	p.Q2009X
SKCM	TCGA-BF-A1PV-01	MAMDC2	ENST00000377182.4	chr9	72746434:72746528:72755060:72755204:72758469:72758735,	72755061	72755204	72755146	72755146	Nonsense_Mutation	G	A	p.W360X
SKCM	TCGA-FS-A1ZP-06	FASN	ENST00000306749.2	chr17	80040789:80040991:80041077:80041301:80041392:80041515,	80041078	80041301	80041110	80041110	Nonsense_Mutation	G	A	p.Q1845X
SKCM	TCGA-FS-A1ZP-06	ZBTB11	ENST00000312938.4	chr3	101374947:101375092:101378626:101378872:101383381:101383558,	101378627	101378872	101378854	101378854	Nonsense_Mutation	G	A	p.Q607X
SKCM	TCGA-FS-A1ZP-06	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740050	35740050	Nonsense_Mutation	G	A	p.W1031X
SKCM	TCGA-FS-A1ZP-06	TRIM27	ENST00000377199.3,ENST00000377194.3	chr6	28875012:28875039:28876584:28876617:28876749:28876766,	28876585	28876617	28876588	28876588	Nonsense_Mutation	G	A	p.Q306X
SKCM	TCGA-FS-A1ZP-06	GLIS3	ENST00000491889.1	chr9	4125733:4125941:4286037:4286523:4299420:4299594,4125819:4125941:4286037:4286523:4298383:4298496,4118744:4118881:4286037:4286523:4299420:4299594,	4286038	4286523	4286122	4286122	Nonsense_Mutation	G	A	p.Q102X
SKCM	TCGA-EB-A551-01	CDK1	ENST00000395284.3,ENST00000519078.2	chr10	62545428:62545545:62547817:62547988:62551647:62551727,	62547818	62547988	62547926	62547926	Nonsense_Mutation	A	T	p.K143X
SKCM	TCGA-EB-A551-01	GGN	ENST00000334928.6	chr19	38874992:38875169:38876060:38877920:38878400:38878462,	38876061	38877920	38876120	38876120	Nonsense_Mutation	G	T	p.C594X
SKCM	TCGA-EB-A551-01	GGN	ENST00000591809.1	chr19	38874992:38875169:38876060:38876140:38878400:38878462,	38876061	38876140	38876120	38876120	Nonsense_Mutation	G	T	p.C594X
SKCM	TCGA-EB-A551-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48877151:48877272:48878746:48878967:48879924:48880045,	48878747	48878967	48878827	48878827	Nonsense_Mutation	C	T	p.Q305X
SKCM	TCGA-EB-A551-01	MCM4	ENST00000520637.1	chr8	48877151:48877272:48878746:48878835:48879924:48880045,	48878747	48878835	48878827	48878827	Nonsense_Mutation	C	T	p.Q305X
SKCM	TCGA-FS-A1Z3-06	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000526707.1	chr11	9182259:9182412:9187382:9187514:9191402:9191496,	9187383	9187514	9187423	9187423	Nonsense_Mutation	C	T	p.W748X
SKCM	TCGA-FS-A1Z3-06	IRAK4	ENST00000551736.1,ENST00000448290.2	chr12	44161905:44162075:44165022:44165168:44165982:44166165,	44165023	44165168	44165129	44165129	Nonsense_Mutation	C	T	p.Q90X
SKCM	TCGA-FS-A1Z3-06	CHTF18	ENST00000565787.1	chr16	841160:841370:842223:842347:842438:842590,	842224	842347	842273	842273	Nonsense_Mutation	C	T	p.Q418X
SKCM	TCGA-FS-A1Z3-06	MZF1	ENST00000599369.1,ENST00000215057.2	chr19	59073299:59074871:59080643:59080764:59080882:59080953,	59080644	59080764	59080695	59080695	Nonsense_Mutation	C	A	p.E241X
SKCM	TCGA-FS-A1Z3-06	FCRL1	ENST00000368176.3,ENST00000358292.3,ENST00000491942.1,ENST00000368175.3	chr1	157772404:157772454:157773634:157773901:157776891:157776912,	157773635	157773901	157773723	157773723	Nonsense_Mutation	C	T	p.W77X
SKCM	TCGA-FS-A1Z3-06	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000389793.2	chr1	235952000:235952145:235954998:235955425:235956802:235956912,	235954999	235955425	235955367	235955367	Nonsense_Mutation	G	T	p.S1392X
SKCM	TCGA-FS-A1Z3-06	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231102927:231103096:231106118:231106202:231108445:231108526,	231106119	231106202	231106164	231106164	Nonsense_Mutation	T	G	p.L151X
SKCM	TCGA-FS-A1Z3-06	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345394	119345394	Nonsense_Mutation	A	T	p.Y248X
SKCM	TCGA-FS-A1Z3-06	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619749	114619749	Nonsense_Mutation	C	T	p.Q245X
SKCM	TCGA-FS-A1Z3-06	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16025993	16025993	Nonsense_Mutation	G	A	p.Q202X
SKCM	TCGA-D3-A3MO-06	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839564	62839564	Nonsense_Mutation	G	T	p.E339X
SKCM	TCGA-D3-A3MO-06	PREP	ENST00000369110.3	chr6	105725439:105726313:105729620:105729777:105730325:105730457,	105729621	105729777	105729674	105729674	Nonsense_Mutation	C	T	p.W595X
SKCM	TCGA-GF-A3OT-06	CD1B	ENST00000368168.3	chr1	158298710:158298804:158299159:158299438:158299641:158299920,	158299160	158299438	158299161	158299161	Nonsense_Mutation	C	T	p.W295X
SKCM	TCGA-GF-A3OT-06	CD1B	ENST00000368168.3	chr1	158298710:158298804:158299159:158299438:158299641:158299920,	158299160	158299438	158299162	158299162	Nonsense_Mutation	C	T	p.W295X
SKCM	TCGA-GF-A3OT-06	IL20RB	ENST00000329582.4,ENST00000475972.1	chr3	136708282:136708407:136714255:136714398:136728954:136729921,136710779:136710930:136714255:136714398:136728954:136729921,	136714256	136714398	136714338	136714338	Nonsense_Mutation	G	A	p.W255X
SKCM	TCGA-GF-A3OT-06	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119114984:119115195:119115900:119116072:119124870:119125018,	119115901	119116072	119115986	119115986	Nonsense_Mutation	A	T	p.K1421X
SKCM	TCGA-BF-A3DJ-01	FAR1	ENST00000527202.1	chr11	13733310:13733355:13733474:13733602:13734512:13734580,	13733475	13733602	13733493	13733493	Nonsense_Mutation	C	T	p.R263X
SKCM	TCGA-BF-A3DJ-01	FAR1	ENST00000354817.3,ENST00000532701.1	chr11	13733310:13733355:13733474:13733593:13734512:13734580,	13733475	13733593	13733493	13733493	Nonsense_Mutation	C	T	p.R263X
SKCM	TCGA-EB-A1NK-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124348612:124348772:124349864:124350061:124351550:124351686,	124349865	124350061	124349897	124349897	Nonsense_Mutation	G	A	p.R1007X
SKCM	TCGA-D3-A51E-06	MEN1	ENST00000337652.1,ENST00000377326.3,ENST00000377313.1,ENST00000478548.1,ENST00000443283.1,ENST00000394374.2,ENST00000377321.1,ENST00000312049.6,ENST00000315422.4,ENST00000394376.1	chr11	64571846:64572288:64572505:64572670:64573106:64573242,	64572506	64572670	64572586	64572586	Nonsense_Mutation	C	A	p.E429X
SKCM	TCGA-D3-A51E-06	COCH	ENST00000396618.3,ENST00000553772.1	chr14	31343764:31343797:31344121:31344178:31344261:31344309,	31344122	31344178	31344159	31344159	Nonsense_Mutation	G	A	p.W5X
SKCM	TCGA-D3-A51E-06	PDZD4	ENST00000544474.1,ENST00000164640.4,ENST00000393758.2,ENST00000484792.1	chrX	153070333:153070355:153070551:153070662:153070959:153071061,	153070552	153070662	153070593	153070593	Nonsense_Mutation	C	A	p.E241X
SKCM	TCGA-D3-A5GR-06	STIM1	ENST00000527651.1,ENST00000533977.1,ENST00000300737.4	chr11	4091255:4091433:4095731:4095909:4103413:4103451,	4095732	4095909	4095772	4095772	Nonsense_Mutation	G	T	p.E278X
SKCM	TCGA-D3-A5GR-06	SRSF5	ENST00000557460.1,ENST00000556587.1	chr14	70235329:70235391:70235514:70235968:70237183:70237257,	70235515	70235968	70235600	70235600	Nonsense_Mutation	C	T	p.R95X
SKCM	TCGA-D3-A5GR-06	SRSF5	ENST00000554021.1,ENST00000553635.1,ENST00000556184.1,ENST00000394366.2,ENST00000555547.1,ENST00000553521.1,ENST00000555349.1,ENST00000451983.2,ENST00000557154.1,ENST00000553369.1	chr14	70235329:70235391:70235514:70235613:70235898:70235968,	70235515	70235613	70235600	70235600	Nonsense_Mutation	C	T	p.R95X
SKCM	TCGA-D3-A5GR-06	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41516417:41516658:41539144:41539215:41550853:41550930,	41539145	41539215	41539149	41539149	Nonsense_Mutation	C	T	p.W1005X
SKCM	TCGA-D3-A5GR-06	DDX17	ENST00000216019.7	chr22	38881882:38882445:38883883:38888120:38889714:38889776,	38883884	38888120	38884115	38884115	Nonsense_Mutation	C	A	p.E485X
SKCM	TCGA-D3-A5GR-06	PIKFYVE	ENST00000264380.4,ENST00000407449.1,ENST00000422495.1,ENST00000452564.1	chr2	209141435:209141554:209142260:209142432:209150449:209150524,	209142261	209142432	209142372	209142372	Nonsense_Mutation	C	T	p.Q185X
SKCM	TCGA-D3-A5GR-06	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98643320:98643424:98645306:98645505:98647185:98647332,	98645307	98645505	98645495	98645495	Nonsense_Mutation	G	A	p.Q348X
SKCM	TCGA-IH-A3EA-01	WT1	ENST00000452863.3,ENST00000448076.3,ENST00000379079.2	chr11	32410587:32410725:32413526:32413610:32414211:32414301,	32413527	32413610	32413596	32413596	Nonsense_Mutation	G	A	p.Q240X
SKCM	TCGA-IH-A3EA-01	WT1	ENST00000530998.1,ENST00000332351.3,ENST00000379077.3	chr11	32410587:32410725:32413517:32413610:32414211:32414301,	32413518	32413610	32413596	32413596	Nonsense_Mutation	G	A	p.Q240X
SKCM	TCGA-IH-A3EA-01	KLK6	ENST00000594641.1,ENST00000376851.3,ENST00000310157.2	chr19	51462413:51462572:51470424:51470581:51471320:51471368,51466722:51466805:51470424:51470581:51471796:51471847,51466722:51466805:51470424:51470581:51471320:51471368,	51470425	51470581	51470516	51470516	Nonsense_Mutation	G	A	p.Q36X
SKCM	TCGA-IH-A3EA-01	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329471	56329471	Nonsense_Mutation	G	A	p.Q24X
SKCM	TCGA-IH-A3EA-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115400064:115400118:115401167:115401332:115402363:115402431,	115401168	115401332	115401232	115401232	Nonsense_Mutation	G	A	p.W119X
SKCM	TCGA-IH-A3EA-01	PYHIN1	ENST00000392252.3,ENST00000368138.3,ENST00000368140.1,ENST00000392254.2	chr1	158908213:158908332:158908869:158909037:158911766:158912189,	158908870	158909037	158908894	158908894	Nonsense_Mutation	G	T	p.E137X
SKCM	TCGA-IH-A3EA-01	REG1A	ENST00000233735.1	chr2	79349164:79349251:79349966:79350078:79350273:79350545,	79349967	79350078	79349983	79349983	Nonsense_Mutation	G	A	p.W113X
SKCM	TCGA-IH-A3EA-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605956	179605956	Nonsense_Mutation	G	A	p.Q4002X
SKCM	TCGA-IH-A3EA-01	OSMR	ENST00000274276.3	chr5	38846100:38846489:38869133:38869219:38876302:38876475,	38869134	38869219	38869168	38869168	Nonsense_Mutation	C	T	p.Q8X
SKCM	TCGA-IH-A3EA-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229527	7229527	Nonsense_Mutation	C	T	p.Q399X
SKCM	TCGA-IH-A3EA-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32037903:32038191:32039766:32040075:32041423:32041729,	32039767	32040075	32039967	32039967	Nonsense_Mutation	C	T	p.W1597X
SKCM	TCGA-IH-A3EA-01	KLC4	ENST00000347162.5,ENST00000458460.2	chr6	43027390:43027423:43029048:43029331:43030654:43030671,	43029049	43029331	43029218	43029218	Nonsense_Mutation	C	T	p.Q49X
SKCM	TCGA-IH-A3EA-01	UBE3C	ENST00000348165.5,ENST00000470408.1	chr7	157046937:157047004:157049607:157049738:157060278:157060370,	157049608	157049738	157049715	157049715	Nonsense_Mutation	C	T	p.R1020X
SKCM	TCGA-IH-A3EA-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965716	123965716	Nonsense_Mutation	C	T	p.Q656X
SKCM	TCGA-GN-A268-06	NCAPD2	ENST00000539714.1,ENST00000315579.5	chr12	6604241:6604391:6618882:6618958:6619794:6619886,6604241:6604391:6618882:6618958:6619240:6619299,	6618883	6618958	6618900	6618900	Nonsense_Mutation	C	T	p.R49X
SKCM	TCGA-GN-A268-06	NPHS2	ENST00000367616.4,ENST00000367615.4	chr1	179528813:179528896:179530423:179530496:179533824:179533928,	179530424	179530496	179530463	179530463	Nonsense_Mutation	G	A	p.R138X
SKCM	TCGA-GN-A268-06	GRHL1	ENST00000324883.5,ENST00000464418.1,ENST00000324907.9,ENST00000405379.2,ENST00000472167.1	chr2	10104363:10104475:10105415:10105510:10126251:10126410,	10105416	10105510	10105488	10105488	Nonsense_Mutation	G	A	p.W363X
SKCM	TCGA-GN-A268-06	AOAH	ENST00000535891.1,ENST00000487014.1,ENST00000480201.1,ENST00000495942.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36589044:36589081:36616179:36616262:36633944:36634036,	36616180	36616262	36616230	36616230	Nonsense_Mutation	C	T	p.W324X
SKCM	TCGA-D3-A2JK-06	DHX35	ENST00000373325.2,ENST00000484417.1,ENST00000252011.3,ENST00000373323.4	chr20	37631414:37631511:37632391:37632550:37634788:37634999,	37632392	37632550	37632434	37632434	Nonsense_Mutation	C	T	p.R268X
SKCM	TCGA-FR-A44A-06	TBATA	ENST00000299290.1	chr10	72533979:72534113:72536908:72537091:72538312:72538392,72534944:72535026:72536908:72537091:72538312:72538392,	72536909	72537091	72536920	72536920	Nonsense_Mutation	G	A	p.Q227X
SKCM	TCGA-FR-A44A-06	C8A	ENST00000361249.3	chr1	57341734:57341882:57347117:57347307:57349153:57349285,	57347118	57347307	57347208	57347208	Nonsense_Mutation	G	A	p.W185X
SKCM	TCGA-FR-A44A-06	RPN2	ENST00000237530.6,ENST00000456102.1,ENST00000373632.4,ENST00000373622.5	chr20	35833169:35833304:35835675:35835852:35838449:35838553,	35835676	35835852	35835688	35835688	Nonsense_Mutation	C	T	p.Q235X
SKCM	TCGA-FR-A44A-06	RARB	ENST00000480001.1	chr3	25622036:25622213:25636010:25636169:25637910:25637946,	25636011	25636169	25636062	25636062	Nonsense_Mutation	T	A	p.L348X
SKCM	TCGA-FR-A44A-06	TBC1D19	ENST00000512840.1,ENST00000264866.4,ENST00000505206.1,ENST00000502873.1,ENST00000504442.1,ENST00000511789.1	chr4	26641762:26641809:26661218:26661329:26667954:26668027,	26661219	26661329	26661294	26661294	Nonsense_Mutation	C	T	p.Q186X
SKCM	TCGA-D3-A1Q8-06	MAG	ENST00000537831.2,ENST00000361922.4,ENST00000392213.3,ENST00000593348.1	chr19	35800776:35801064:35801449:35801546:35802820:35802912,	35801450	35801546	35801452	35801452	Nonsense_Mutation	C	T	p.R483X
SKCM	TCGA-ER-A42K-06	DSC3	ENST00000434452.1,ENST00000360428.4	chr18	28605725:28605881:28609474:28609594:28610938:28611138,	28609475	28609594	28609539	28609539	Nonsense_Mutation	C	T	p.W137X
SKCM	TCGA-ER-A42K-06	CD1E	ENST00000368161.3	chr1	158325317:158325359:158325616:158325791:158326287:158326381,	158325617	158325791	158325757	158325757	Nonsense_Mutation	C	T	p.R166X
SKCM	TCGA-ER-A42K-06	CD1E	ENST00000368160.3,ENST00000444681.2,ENST00000368167.3	chr1	158325317:158325359:158325616:158325895:158326287:158326381,	158325617	158325895	158325757	158325757	Nonsense_Mutation	C	T	p.R166X
SKCM	TCGA-ER-A42K-06	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641212	36641212	Nonsense_Mutation	A	T	p.L336X
SKCM	TCGA-ER-A42K-06	ITM2C	ENST00000457215.1,ENST00000326427.6,ENST00000326407.6	chr2	231729694:231729860:231738131:231738272:231740334:231740519,	231738132	231738272	231738153	231738153	Nonsense_Mutation	C	T	p.R48X
SKCM	TCGA-EE-A3JI-06	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871159	871159	Nonsense_Mutation	G	A	p.R444X
SKCM	TCGA-EE-A3JI-06	DHX37	ENST00000544745.1,ENST00000308736.2,ENST00000539298.1	chr12	125457048:125457145:125459964:125460057:125461887:125462036,	125459965	125460057	125460023	125460023	Nonsense_Mutation	G	A	p.R308X
SKCM	TCGA-EE-A3JI-06	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635227	33635227	Nonsense_Mutation	C	T	p.R671X
SKCM	TCGA-EE-A3JI-06	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38266203:38266472:38320073:38320592:38357092:38357470,	38320074	38320592	38320463	38320463	Nonsense_Mutation	G	A	p.R170X
SKCM	TCGA-EE-A3JI-06	ACSM1	ENST00000523065.1	chr16	20696514:20696725:20702318:20702557:20708957:20709066,	20702319	20702557	20702391	20702391	Nonsense_Mutation	C	T	p.W40X
SKCM	TCGA-EE-A3JI-06	ACSM1	ENST00000520010.1	chr16	20696514:20696725:20702318:20702561:20708957:20709066,	20702319	20702561	20702391	20702391	Nonsense_Mutation	C	T	p.W40X
SKCM	TCGA-EE-A3JI-06	IGSF21	ENST00000251296.1,ENST00000497331.2	chr1	18692112:18692191:18702803:18702889:18703293:18703414,	18702804	18702889	18702887	18702887	Nonsense_Mutation	C	T	p.Q367X
SKCM	TCGA-EE-A3JI-06	USP33	ENST00000370793.1,ENST00000481579.1,ENST00000370792.3,ENST00000370794.3,ENST00000357428.1	chr1	78178884:78178966:78180298:78180468:78181426:78181553,	78180299	78180468	78180377	78180377	Nonsense_Mutation	G	A	p.R744X
SKCM	TCGA-EE-A3JI-06	CR2	ENST00000367057.3,ENST00000367058.3,ENST00000367059.3	chr1	207644341:207644432:207644767:207644844:207646116:207646213,	207644768	207644844	207644818	207644818	Nonsense_Mutation	G	A	p.W515X
SKCM	TCGA-EE-A3JI-06	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54096512:54096675:54101475:54101631:54102763:54102892,	54101476	54101631	54101512	54101512	Nonsense_Mutation	C	T	p.W1688X
SKCM	TCGA-EE-A3JI-06	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152322470	152322470	Nonsense_Mutation	C	T	p.Q2146X
SKCM	TCGA-EE-A3JI-06	B4GALT4	ENST00000480814.1,ENST00000483209.1,ENST00000393765.2,ENST00000467604.1	chr3	118945655:118945888:118948693:118949091:118953991:118954074,118945835:118945888:118948693:118949091:118955699:118955917,	118948694	118949091	118948832	118948832	Nonsense_Mutation	G	A	p.Q39X
SKCM	TCGA-EE-A3JI-06	PTK7	ENST00000473339.1,ENST00000230418.4,ENST00000461389.1,ENST00000352931.2,ENST00000481273.1,ENST00000349241.2,ENST00000489707.1,ENST00000487673.1,ENST00000230419.4,ENST00000345201.2,ENST00000470019.1	chr6	43114355:43114436:43126554:43126706:43127525:43127621,	43126555	43126706	43126660	43126660	Nonsense_Mutation	C	T	p.Q903X
SKCM	TCGA-EE-A3JI-06	UBE2H	ENST00000496698.1,ENST00000355621.3,ENST00000480245.1	chr7	129479064:129479175:129497350:129497403:129498741:129498781,	129497351	129497403	129497352	129497352	Nonsense_Mutation	A	C	p.Y99X
SKCM	TCGA-EE-A3JI-06	ATP6V0A4	ENST00000353492.4,ENST00000393054.1,ENST00000310018.2	chr7	138424284:138424378:138429867:138430025:138432169:138432309,	138429868	138430025	138430021	138430021	Nonsense_Mutation	C	T	p.W442X
SKCM	TCGA-EE-A3J5-06	ZNF215	ENST00000527171.1	chr11	6962801:6962884:6964776:6964872:6976920:6977013,	6964777	6964872	6964835	6964835	Nonsense_Mutation	G	A	p.W225X
SKCM	TCGA-EE-A3J5-06	DCDC1	ENST00000597505.1,ENST00000452803.1	chr11	31287053:31287147:31312193:31312399:31327161:31327324,	31312194	31312399	31312208	31312208	Nonsense_Mutation	C	A	p.E316X
SKCM	TCGA-EE-A3J5-06	AMBRA1	ENST00000526545.1	chr11	46418999:46419493:46430062:46430256:46431825:46431918,46418999:46419493:46430062:46430256:46439462:46439545,	46430063	46430256	46430162	46430162	Nonsense_Mutation	G	A	p.Q1105X
SKCM	TCGA-EE-A3J5-06	SYNE2	ENST00000357395.3,ENST00000555612.1,ENST00000358025.3,ENST00000553289.1,ENST00000394768.2,ENST00000344113.4,ENST00000555002.1	chr14	64628831:64628994:64630119:64630299:64632002:64632128,	64630120	64630299	64630183	64630183	Nonsense_Mutation	C	T	p.R5455X
SKCM	TCGA-EE-A3J5-06	SLC39A11	ENST00000255559.3	chr17	70732788:70732858:70845772:70845943:70943869:70944014,70732788:70732858:70845772:70845943:70943890:70944014,	70845773	70845943	70845917	70845917	Nonsense_Mutation	G	A	p.Q160X
SKCM	TCGA-EE-A3J5-06	TTYH1	ENST00000376530.3,ENST00000492920.1,ENST00000476863.1,ENST00000487134.1	chr19	54946806:54946864:54947007:54947053:54947267:54947338,54946806:54946864:54947007:54947053:54947270:54947351,	54947008	54947053	54947051	54947051	Nonsense_Mutation	C	T	p.Q438X
SKCM	TCGA-EE-A3J5-06	DGCR2	ENST00000263196.7,ENST00000545799.1,ENST00000389262.4	chr22	19055612:19055738:19076880:19077003:19109640:19109920,	19076881	19077003	19076956	19076956	Nonsense_Mutation	G	A	p.Q43X
SKCM	TCGA-EE-A3J5-06	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000272427.6	chr2	72742171:72742255:72786581:72786650:72802620:72802797,	72786582	72786650	72786608	72786608	Nonsense_Mutation	G	A	p.R297X
SKCM	TCGA-EE-A3J5-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749452	196749452	Nonsense_Mutation	G	A	p.R1874X
SKCM	TCGA-EE-A3J5-06	CWH43	ENST00000514053.2	chr4	48988329:48988489:48990493:48990685:48993470:48993591,	48990494	48990685	48990633	48990633	Nonsense_Mutation	G	A	p.W61X
SKCM	TCGA-EE-A3J5-06	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1,ENST00000508049.1	chr4	56336910:56336973:56342129:56342221:56344981:56345130,	56342130	56342221	56342132	56342132	Nonsense_Mutation	C	A	p.E116X
SKCM	TCGA-EE-A3J5-06	DAPP1	ENST00000512369.1	chr4	100784926:100785012:100787190:100787278:100789273:100789871,	100787191	100787278	100787272	100787272	Nonsense_Mutation	G	A	p.W256X
SKCM	TCGA-EE-A3J5-06	JAKMIP2	ENST00000265272.5,ENST00000507386.1,ENST00000333010.6	chr5	147027938:147028037:147029900:147030110:147040510:147041008,	147029901	147030110	147029951	147029951	Nonsense_Mutation	G	A	p.R263X
SKCM	TCGA-EE-A3J5-06	SLC22A1	ENST00000460902.2,ENST00000324965.4,ENST00000457470.2	chr6	160542967:160543378:160551135:160551239:160553263:160553418,	160551136	160551239	160551162	160551162	Nonsense_Mutation	G	A	p.W146X
SKCM	TCGA-EE-A3J5-06	IGF2BP3	ENST00000476938.1,ENST00000468263.1,ENST00000466809.2,ENST00000258729.3	chr7	23401152:23401216:23401308:23401360:23458394:23458443,	23401309	23401360	23401339	23401339	Nonsense_Mutation	G	A	p.Q103X
SKCM	TCGA-EE-A3J5-06	NPSR1	ENST00000381544.2	chr7	34818106:34818177:34851381:34851475:34867012:34867214,34724163:34724296:34851381:34851475:34867012:34867214,	34851382	34851475	34851469	34851469	Nonsense_Mutation	C	T	p.Q158X
SKCM	TCGA-EE-A3J5-06	ADRA1A	ENST00000380582.3	chr8	26614060:26614296:26627797:26628183:26721603:26722332,	26627798	26628183	26627876	26627876	Nonsense_Mutation	C	T	p.W397X
SKCM	TCGA-EE-A3J5-06	TSTD2	ENST00000354801.2,ENST00000341170.4	chr9	100387962:100388279:100389679:100389894:100395524:100395583,	100389680	100389894	100389828	100389828	Nonsense_Mutation	G	T	p.S6X
SKCM	TCGA-EE-A3J5-06	TSTD2	ENST00000375172.2	chr9	100387962:100388279:100389587:100389894:100395524:100395583,	100389588	100389894	100389828	100389828	Nonsense_Mutation	G	T	p.S6X
SKCM	TCGA-EE-A3J5-06	MAOB	ENST00000536181.1,ENST00000538942.1,ENST00000378069.4,ENST00000487544.1	chrX	43661418:43661510:43662546:43662651:43698113:43698251,	43662547	43662651	43662611	43662611	Nonsense_Mutation	C	T	p.W107X
SKCM	TCGA-D3-A3BZ-06	PRICKLE2	ENST00000564377.1,ENST00000295902.6	chr3	64132505:64133378:64138857:64139044:64142837:64143041,	64138858	64139044	64139008	64139008	Nonsense_Mutation	G	A	p.R213X
SKCM	TCGA-DA-A3F3-06	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345372	119345372	Nonsense_Mutation	G	A	p.Q256X
SKCM	TCGA-FW-A3TU-06	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48936978	48936978	Nonsense_Mutation	C	G	p.S249X
SKCM	TCGA-FW-A3TU-06	SCPEP1	ENST00000575423.1,ENST00000262288.3	chr17	55074374:55074416:55075745:55075859:55078215:55078353,	55075746	55075859	55075817	55075817	Nonsense_Mutation	A	T	p.R318X
SKCM	TCGA-FW-A3TU-06	SCPEP1	ENST00000576154.1	chr17	55074374:55074416:55075734:55075859:55078215:55078353,	55075735	55075859	55075817	55075817	Nonsense_Mutation	A	T	p.R318X
SKCM	TCGA-FW-A3TU-06	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069261	29069261	Nonsense_Mutation	T	A	p.L110X
SKCM	TCGA-FW-A3TU-06	RPRD2	ENST00000401000.4,ENST00000539519.1,ENST00000492220.1,ENST00000369068.4	chr1	150432535:150432793:150437002:150437203:150443036:150443456,	150437003	150437203	150437134	150437134	Nonsense_Mutation	G	T	p.E515X
SKCM	TCGA-FW-A3TU-06	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73679775	73679775	Nonsense_Mutation	C	T	p.Q2040X
SKCM	TCGA-FW-A3TU-06	THRB	ENST00000416420.1,ENST00000280696.5,ENST00000396671.2,ENST00000356447.4	chr3	24184991:24185197:24188165:24188313:24193880:24193981,	24188166	24188313	24188211	24188211	Nonsense_Mutation	C	A	p.E163X
SKCM	TCGA-FW-A3TU-06	UGT2A3	ENST00000251566.4	chr4	69796872:69796960:69798345:69798477:69811023:69811168,	69798346	69798477	69798408	69798408	Nonsense_Mutation	G	A	p.Q312X
SKCM	TCGA-FW-A3TU-06	GRM4	ENST00000374181.4,ENST00000538487.2,ENST00000609973.1	chr6	34029669:34029805:34059659:34059876:34100754:34100798,	34059660	34059876	34059678	34059678	Nonsense_Mutation	G	A	p.Q240X
SKCM	TCGA-EE-A20F-06	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224102	51224102	Nonsense_Mutation	G	A	p.R1216X
SKCM	TCGA-EE-A20F-06	MYO5B	ENST00000285039.7	chr18	47516808:47516890:47518657:47518801:47527624:47527781,	47518658	47518801	47518741	47518741	Nonsense_Mutation	G	A	p.Q225X
SKCM	TCGA-EE-A20F-06	CNTN4	ENST00000418658.1,ENST00000438282.2,ENST00000427331.1,ENST00000397461.1,ENST00000430505.2,ENST00000427741.1	chr3	2777898:2778025:2787205:2787381:2861169:2861265,	2787206	2787381	2787337	2787337	Nonsense_Mutation	C	A	p.S105X
SKCM	TCGA-FS-A1ZQ-06	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104877831	104877831	Nonsense_Mutation	G	A	p.Q151X
SKCM	TCGA-FS-A1ZQ-06	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78592384:78592456:78593114:78593311:78594252:78594342,	78593115	78593311	78593243	78593243	Nonsense_Mutation	G	A	p.W2194X
SKCM	TCGA-EE-A2GH-06	CNTD1	ENST00000588527.1	chr17	40950817:40950848:40955637:40955713:40956242:40956414,40950904:40951036:40955637:40955713:40956242:40956414,	40955638	40955713	40955691	40955691	Nonsense_Mutation	C	T	p.Q75X
SKCM	TCGA-EE-A2GH-06	SLC13A3	ENST00000472148.1,ENST00000396360.1	chr20	45212210:45212308:45217798:45217894:45221042:45221085,	45217799	45217894	45217888	45217888	Nonsense_Mutation	C	T	p.W259X
SKCM	TCGA-EE-A2GH-06	FAM221A	ENST00000409192.3,ENST00000409994.3	chr7	23728887:23729078:23731008:23731215:23740404:23740487,	23731009	23731215	23731110	23731110	Nonsense_Mutation	C	T	p.Q178X
SKCM	TCGA-DA-A1I2-06	POLR2D	ENST00000409698.1,ENST00000272645.4	chr2	128605712:128605759:128608163:128608259:128610498:128610679,	128608164	128608259	128608249	128608249	Nonsense_Mutation	G	A	p.Q89X
SKCM	TCGA-D3-A1Q4-06	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890981	890981	Nonsense_Mutation	G	A	p.Q149X
SKCM	TCGA-D3-A1Q4-06	ROCK1	ENST00000399799.2	chr18	18572791:18572898:18586311:18586558:18586659:18586751,	18586312	18586558	18586524	18586524	Nonsense_Mutation	G	T	p.S558X
SKCM	TCGA-D3-A1Q4-06	PLA2G4A	ENST00000367466.3	chr1	186880379:186880521:186901894:186902031:186908139:186908362,	186901895	186902031	186901934	186901934	Nonsense_Mutation	C	T	p.R200X
SKCM	TCGA-D3-A1Q4-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110X
SKCM	TCGA-D3-A1Q4-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110X
SKCM	TCGA-D3-A1Q4-06	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113169591	113169591	Nonsense_Mutation	C	T	p.W2763X
SKCM	TCGA-D3-A2JA-06	NLRP7	ENST00000446217.1,ENST00000588756.1,ENST00000328092.5,ENST00000592784.1,ENST00000448121.2	chr19	55435020:55435240:55438972:55439143:55441866:55442034,	55438973	55439143	55439137	55439137	Nonsense_Mutation	C	T	p.W911X
SKCM	TCGA-D3-A2JA-06	VPS72	ENST00000368892.4,ENST00000491094.2,ENST00000496809.1,ENST00000354473.4	chr1	151150476:151150621:151156792:151156969:151157981:151158096,	151156793	151156969	151156850	151156850	Nonsense_Mutation	G	A	p.Q169X
SKCM	TCGA-D3-A2JC-06	CHRDL1	ENST00000444321.2,ENST00000482160.1,ENST00000372042.1	chrX	109924709:109924877:109931821:109932031:109937390:109937559,	109931822	109932031	109931894	109931894	Nonsense_Mutation	G	A	p.R306X
SKCM	TCGA-DA-A1IC-06	RPH3A	ENST00000548197.1,ENST00000546703.1,ENST00000543106.2,ENST00000552667.1,ENST00000389385.4,ENST00000547840.1,ENST00000548866.1,ENST00000549769.1,ENST00000547728.1,ENST00000549736.1,ENST00000415485.3,ENST00000551198.1	chr12	113230051:113230068:113266105:113266194:113285500:113285536,113229947:113230068:113266105:113266194:113274295:113274307,	113266106	113266194	113266161	113266161	Nonsense_Mutation	G	A	p.W13X
SKCM	TCGA-DA-A1IC-06	RPH3A	ENST00000548197.1,ENST00000546703.1,ENST00000543106.2,ENST00000552667.1,ENST00000389385.4,ENST00000547840.1,ENST00000548866.1,ENST00000549769.1,ENST00000547728.1,ENST00000549736.1,ENST00000415485.3,ENST00000551198.1	chr12	113230051:113230068:113266105:113266194:113285500:113285536,113229947:113230068:113266105:113266194:113274295:113274307,	113266106	113266194	113266162	113266162	Nonsense_Mutation	G	A	p.W13X
SKCM	TCGA-DA-A1IC-06	TINAGL1	ENST00000468635.1,ENST00000457433.2,ENST00000478398.1,ENST00000498429.1,ENST00000271064.7	chr1	32050282:32050402:32050486:32050637:32050751:32050941,	32050487	32050637	32050549	32050549	Nonsense_Mutation	C	T	p.Q257X
SKCM	TCGA-DA-A1IC-06	ARHGEF3	ENST00000498517.1,ENST00000473779.1,ENST00000338458.4,ENST00000468727.1,ENST00000477833.1,ENST00000477440.2,ENST00000481422.1,ENST00000496106.1	chr3	56789099:56789179:56807736:56807844:56916319:56916382,	56807737	56807844	56807811	56807811	Nonsense_Mutation	G	A	p.R76X
SKCM	TCGA-DA-A1IC-06	TNIP3	ENST00000057513.3,ENST00000454328.1	chr4	122053691:122053817:122059778:122059839:122062970:122063054,	122059779	122059839	122059830	122059830	Nonsense_Mutation	G	A	p.Q299X
SKCM	TCGA-DA-A1IC-06	ZMAT4	ENST00000297737.6,ENST00000519406.1	chr8	40438722:40438780:40532222:40532450:40554763:40554856,	40532223	40532450	40532385	40532385	Nonsense_Mutation	G	A	p.Q139X
SKCM	TCGA-EE-A2ML-06	ARHGEF17	ENST00000263674.3	chr11	73057927:73058005:73063874:73064057:73066577:73066694,	73063875	73064057	73064052	73064052	Nonsense_Mutation	C	T	p.Q1150X
SKCM	TCGA-EE-A2ML-06	FAT3	ENST00000525166.1,ENST00000298047.6,ENST00000409404.2	chr11	92523108:92523384:92525932:92526143:92531001:92535075,	92525933	92526143	92525957	92525957	Nonsense_Mutation	C	T	p.R1546X
SKCM	TCGA-EE-A2ML-06	TAS1R1	ENST00000333172.6	chr1	6631000:6631275:6634690:6635452:6636474:6636687,	6634691	6635452	6634815	6634815	Nonsense_Mutation	G	A	p.W208X
SKCM	TCGA-EE-A2ML-06	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800500	28800500	Nonsense_Mutation	C	T	p.R430X
SKCM	TCGA-EE-A2ML-06	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332856	175332856	Nonsense_Mutation	G	A	p.R899X
SKCM	TCGA-ER-A193-06	RNLS	ENST00000331772.4	chr10	90034717:90034789:90074222:90074398:90122308:90122482,90044715:90045263:90074222:90074398:90122308:90122482,	90074223	90074398	90074264	90074264	Nonsense_Mutation	G	A	p.Q279X
SKCM	TCGA-ER-A193-06	AKT1	ENST00000554848.1,ENST00000555926.1,ENST00000402615.2,ENST00000407796.2,ENST00000349310.3,ENST00000555528.1	chr14	105243007:105243107:105246424:105246553:105258934:105259057,	105246425	105246553	105246461	105246461	Nonsense_Mutation	G	A	p.Q47X
SKCM	TCGA-ER-A193-06	SMYD4	ENST00000573937.1,ENST00000305513.7,ENST00000570368.1,ENST00000571854.1	chr17	1707919:1708009:1715264:1715409:1731154:1731300,	1715265	1715409	1715306	1715306	Nonsense_Mutation	G	A	p.Q80X
SKCM	TCGA-ER-A193-06	S100A6	ENST00000368719.4	chr1	153507189:153507306:153507677:153507836:153508264:153508409,153507193:153507306:153507677:153507836:153508424:153508467,	153507678	153507836	153507797	153507797	Nonsense_Mutation	G	A	p.Q7X
SKCM	TCGA-ER-A193-06	IGSF8	ENST00000314485.7,ENST00000368086.1	chr1	160062361:160062485:160062713:160063121:160063499:160063961,	160062714	160063121	160062789	160062789	Nonsense_Mutation	G	A	p.R413X
SKCM	TCGA-ER-A193-06	NPL	ENST00000367552.2,ENST00000367555.1	chr1	182791249:182791334:182794915:182794955:182798737:182798814,182787772:182787824:182794915:182794955:182798737:182798814,	182794916	182794955	182794936	182794936	Nonsense_Mutation	C	G	p.S225X
SKCM	TCGA-ER-A193-06	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460137	107460137	Nonsense_Mutation	C	T	p.W99X
SKCM	TCGA-ER-A193-06	IFIH1	ENST00000263642.2	chr2	163133924:163134203:163134714:163134838:163136505:163136622,	163134715	163134838	163134738	163134738	Nonsense_Mutation	C	T	p.W581X
SKCM	TCGA-ER-A193-06	TTC21B	ENST00000464374.1,ENST00000243344.7	chr2	166802033:166802200:166805903:166806014:166806104:166806234,	166805904	166806014	166805994	166805994	Nonsense_Mutation	G	A	p.R58X
SKCM	TCGA-ER-A193-06	SP110	ENST00000358662.4,ENST00000540870.1,ENST00000258381.6,ENST00000490880.1,ENST00000258382.5	chr2	231065600:231065681:231067294:231067444:231072705:231072774,	231067295	231067444	231067394	231067394	Nonsense_Mutation	G	A	p.Q317X
SKCM	TCGA-ER-A193-06	SP110	ENST00000392048.3	chr2	231065600:231065681:231067294:231067438:231072705:231072774,	231067295	231067438	231067394	231067394	Nonsense_Mutation	G	A	p.Q317X
SKCM	TCGA-ER-A193-06	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33549311:33549488:33561131:33561284:33576158:33577265,	33561132	33561284	33561138	33561138	Nonsense_Mutation	C	T	p.W1373X
SKCM	TCGA-ER-A193-06	KCNIP1	ENST00000411494.1	chr5	169931576:169931637:170139857:170139890:170145761:170145886,	170139858	170139890	170139870	170139870	Nonsense_Mutation	G	A	p.W25X
SKCM	TCGA-ER-A193-06	MAP3K5	ENST00000359015.4	chr6	136935296:136935424:136943985:136944119:136958462:136958544,	136943986	136944119	136944029	136944029	Nonsense_Mutation	G	A	p.Q703X
SKCM	TCGA-ER-A193-06	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125058007:125058142:125061847:125061997:125072420:125072531,	125061848	125061997	125061927	125061927	Nonsense_Mutation	T	A	p.L935X
SKCM	TCGA-ER-A193-06	KHDRBS3	ENST00000355849.5,ENST00000517859.1,ENST00000524199.1,ENST00000524282.1	chr8	136560996:136561143:136569690:136569830:136594120:136594316,	136569691	136569830	136569778	136569778	Nonsense_Mutation	C	T	p.R187X
SKCM	TCGA-ER-A193-06	VAMP7	ENST00000479687.1	chrX	155111040:155111111:155119120:155119296:155125285:155125343,	155119121	155119296	155119253	155119253	Nonsense_Mutation	A	T	p.K42X
SKCM	TCGA-ER-A193-06	VAMP7	ENST00000488344.1	chrX	155111040:155111111:155119120:155119275:155125285:155125343,155111040:155111111:155119120:155119275:155127775:155127913,	155119121	155119275	155119253	155119253	Nonsense_Mutation	A	T	p.K42X
SKCM	TCGA-D3-A3C6-06	EPS8	ENST00000543363.1,ENST00000543523.1,ENST00000543468.1,ENST00000536793.1,ENST00000546311.1,ENST00000543612.1,ENST00000535752.1,ENST00000281172.5,ENST00000544064.1	chr12	15823792:15823857:15834159:15834236:15835826:15835906,	15834160	15834236	15834229	15834229	Nonsense_Mutation	C	A	p.G23X
SKCM	TCGA-D3-A3MU-06	PMEL	ENST00000360714.4,ENST00000536427.1,ENST00000548493.1	chr12	56355407:56355516:56359719:56359846:56360461:56360493,	56359720	56359846	56359780	56359780	Nonsense_Mutation	T	A	p.K6X
SKCM	TCGA-D3-A3MU-06	SCN2A	ENST00000375427.2,ENST00000357398.3	chr2	166165175:166165304:166165674:166165766:166166832:166167105,	166165675	166165766	166165718	166165718	Nonsense_Mutation	C	T	p.R217X
SKCM	TCGA-D3-A2J8-06	C8A	ENST00000361249.3	chr1	57341734:57341882:57347117:57347307:57349153:57349285,	57347118	57347307	57347218	57347218	Nonsense_Mutation	C	T	p.R189X
SKCM	TCGA-D3-A2J8-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125859	12125859	Nonsense_Mutation	G	A	p.W1944X
SKCM	TCGA-D3-A2J8-06	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000435423.1,ENST00000359028.2,ENST00000356239.3	chr7	91714898:91715000:91715541:91715730:91718698:91718843,	91715542	91715730	91715708	91715708	Nonsense_Mutation	T	A	p.L3056X
SKCM	TCGA-ER-A199-06	HDHD2	ENST00000588183.1,ENST00000591480.1,ENST00000300605.6,ENST00000590815.1	chr18	44641686:44641719:44656614:44656699:44660866:44661075,	44656615	44656699	44656625	44656625	Nonsense_Mutation	G	A	p.Q129X
SKCM	TCGA-ER-A199-06	SIPA1L3	ENST00000601054.1	chr19	38655410:38655546:38673158:38673380:38682784:38682950,38664265:38664312:38673158:38673380:38682784:38682950,	38673159	38673380	38673292	38673292	Nonsense_Mutation	A	T	p.K1448X
SKCM	TCGA-EE-A2GM-06	RNLS	ENST00000331772.4	chr10	90034717:90034789:90074222:90074398:90122308:90122482,90044715:90045263:90074222:90074398:90122308:90122482,	90074223	90074398	90074235	90074235	Nonsense_Mutation	C	T	p.W288X
SKCM	TCGA-EE-A2GM-06	RNLS	ENST00000331772.4	chr10	90034717:90034789:90074222:90074398:90122308:90122482,90044715:90045263:90074222:90074398:90122308:90122482,	90074223	90074398	90074236	90074236	Nonsense_Mutation	C	T	p.W288X
SKCM	TCGA-EE-A2GM-06	CERS3	ENST00000284382.4,ENST00000558884.2,ENST00000538112.2	chr15	101031021:101031136:101041881:101042055:101061871:101061961,	101041882	101042055	101042026	101042026	Nonsense_Mutation	C	T	p.W10X
SKCM	TCGA-EE-A2GM-06	CHAF1A	ENST00000301280.5	chr19	4405908:4405959:4408899:4409756:4418016:4418073,	4408900	4409756	4409289	4409289	Nonsense_Mutation	C	T	p.Q165X
SKCM	TCGA-EE-A2GM-06	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49196239:49196463:49197801:49197997:49199228:49199522,	49197802	49197997	49197860	49197860	Nonsense_Mutation	C	T	p.Q383X
SKCM	TCGA-EE-A2GM-06	LRGUK	ENST00000285928.2	chr7	133906530:133906670:133932307:133932396:133933702:133933828,	133932308	133932396	133932392	133932392	Nonsense_Mutation	C	T	p.Q690X
SKCM	TCGA-EE-A2GM-06	UBE3C	ENST00000348165.5	chr7	156956503:156956557:156961741:156961816:156962997:156963093,	156961742	156961816	156961790	156961790	Nonsense_Mutation	C	T	p.R57X
SKCM	TCGA-EE-A2GM-06	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157929346:157929387:157930985:157931207:157959622:157959983,	157930986	157931207	157931073	157931073	Nonsense_Mutation	G	A	p.R349X
SKCM	TCGA-EE-A2GM-06	SAMD12	ENST00000524796.1,ENST00000409003.4	chr8	119209785:119209971:119391798:119391939:119452070:119452200,	119391799	119391939	119391886	119391886	Nonsense_Mutation	G	A	p.Q126X
SKCM	TCGA-EE-A2GM-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-EE-A2GM-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-EE-A2GM-06	NLGN4X	ENST00000275857.6,ENST00000381095.3,ENST00000538097.1,ENST00000381092.1,ENST00000381093.2	chrX	5821117:5821907:5827094:5827280:5947320:5947473,	5827095	5827280	5827207	5827207	Nonsense_Mutation	C	T	p.W233X
SKCM	TCGA-EE-A2GM-06	NLGN4X	ENST00000275857.6,ENST00000381095.3,ENST00000538097.1,ENST00000381092.1,ENST00000381093.2	chrX	5821117:5821907:5827094:5827280:5947320:5947473,	5827095	5827280	5827208	5827208	Nonsense_Mutation	C	T	p.W233X
SKCM	TCGA-EB-A3XD-01	ATP2A2	ENST00000308664.6,ENST00000539276.2,ENST00000548169.2,ENST00000395494.2,ENST00000377685.5	chr12	110781060:110781239:110782690:110782776:110783053:110783187,	110782691	110782776	110782771	110782771	Nonsense_Mutation	C	T	p.Q868X
SKCM	TCGA-EB-A3XD-01	TAF1B	ENST00000263663.5,ENST00000396242.3,ENST00000469895.1,ENST00000434858.1,ENST00000480197.1,ENST00000402170.1	chr2	9989501:9989589:9991669:9991767:9994454:9994550,	9991670	9991767	9991705	9991705	Nonsense_Mutation	C	T	p.Q81X
SKCM	TCGA-EB-A3XD-01	TP63	ENST00000418709.2,ENST00000320472.5,ENST00000440651.2,ENST00000392460.3,ENST00000264731.3	chr3	189507589:189507631:189526060:189526315:189582020:189582057,189456430:189456563:189526060:189526315:189582020:189582057,	189526061	189526315	189526280	189526280	Nonsense_Mutation	C	T	p.Q88X
SKCM	TCGA-EB-A3XD-01	EGF	ENST00000509793.1	chr4	110866228:110866431:110882022:110882145:110883018:110883141,	110882023	110882145	110882145	110882145	Nonsense_Mutation	C	T	p.Q397X
SKCM	TCGA-D3-A5GS-06	ACVRL1	ENST00000552678.1,ENST00000388922.4,ENST00000419526.2,ENST00000550683.1	chr12	52309231:52309284:52309819:52310017:52312768:52312899,	52309820	52310017	52309989	52309989	Nonsense_Mutation	G	A	p.W406X
SKCM	TCGA-D3-A5GS-06	KLK2	ENST00000594174.1	chr19	51376713:51376775:51377976:51378222:51379727:51379813,	51377977	51378222	51378017	51378017	Nonsense_Mutation	G	A	p.W29X
SKCM	TCGA-D3-A5GS-06	KLK2	ENST00000597439.1,ENST00000600755.1,ENST00000325321.3,ENST00000358049.4	chr19	51376438:51376510:51377976:51378136:51379727:51379813,51376713:51376775:51377976:51378136:51379727:51379813,	51377977	51378136	51378017	51378017	Nonsense_Mutation	G	A	p.W29X
SKCM	TCGA-D3-A5GS-06	FCGR2A	ENST00000536731.1	chr1	161475776:161475797:161476123:161476497:161479609:161479689,	161476124	161476497	161476237	161476237	Nonsense_Mutation	C	T	p.Q74X
SKCM	TCGA-D3-A5GS-06	FCGR2A	ENST00000367972.4,ENST00000467654.1	chr1	161475776:161475797:161476126:161476381:161479609:161479689,	161476127	161476381	161476237	161476237	Nonsense_Mutation	C	T	p.Q74X
SKCM	TCGA-D3-A5GS-06	FCGR2A	ENST00000483665.2	chr1	161475776:161475797:161476126:161476497:161479609:161479689,	161476127	161476497	161476237	161476237	Nonsense_Mutation	C	T	p.Q74X
SKCM	TCGA-D3-A5GS-06	FCGR2A	ENST00000271450.6	chr1	161475776:161475797:161476123:161476381:161479609:161479689,	161476124	161476381	161476237	161476237	Nonsense_Mutation	C	T	p.Q74X
SKCM	TCGA-D3-A5GS-06	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000436487.1,ENST00000443646.1,ENST00000325123.4	chr3	42569542:42569615:42572270:42572424:42572962:42573023,	42572271	42572424	42572422	42572422	Nonsense_Mutation	G	A	p.W222X
SKCM	TCGA-D3-A5GS-06	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1	chr5	96235824:96235893:96237209:96237385:96237977:96238057,	96237210	96237385	96237351	96237351	Nonsense_Mutation	C	T	p.Q572X
SKCM	TCGA-D3-A1Q1-06	TGM1	ENST00000206765.6	chr14	24728909:24729017:24729145:24729264:24729655:24729904,	24729146	24729264	24729191	24729191	Nonsense_Mutation	G	T	p.Y277X
SKCM	TCGA-ER-A19J-06	CCDC74B	ENST00000409943.3,ENST00000392984.3,ENST00000310463.6	chr2	130897595:130897669:130897751:130897944:130898730:130898869,	130897752	130897944	130897757	130897757	Nonsense_Mutation	G	A	p.Q291X
SKCM	TCGA-GF-A6C9-06	IL2RA	ENST00000379959.3	chr10	6061832:6061904:6063440:6063656:6066206:6066317,	6063441	6063656	6063631	6063631	Nonsense_Mutation	C	T	p.W131X
SKCM	TCGA-GF-A6C9-06	IL2RA	ENST00000256876.6	chr10	6061832:6061904:6063467:6063656:6066206:6066317,	6063468	6063656	6063631	6063631	Nonsense_Mutation	C	T	p.W131X
SKCM	TCGA-GF-A6C9-06	SLC22A10	ENST00000332793.6	chr11	63066985:63067101:63069800:63070015:63071579:63071688,	63069801	63070015	63069907	63069907	Nonsense_Mutation	C	T	p.R393X
SKCM	TCGA-GF-A6C9-06	ANO4	ENST00000392977.3,ENST00000392979.3,ENST00000550015.1,ENST00000299222.9	chr12	101505340:101505488:101510456:101510576:101514297:101514403,	101510457	101510576	101510497	101510497	Nonsense_Mutation	C	T	p.R796X
SKCM	TCGA-GF-A6C9-06	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84611654:84611834:84639235:84639389:84651024:84651057,	84639236	84639389	84639263	84639263	Nonsense_Mutation	C	T	p.Q840X
SKCM	TCGA-GF-A6C9-06	GALNT14	ENST00000481023.1,ENST00000486564.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31165066:31165170:31167723:31167808:31168648:31168736,	31167724	31167808	31167798	31167798	Nonsense_Mutation	C	T	p.W251X
SKCM	TCGA-GF-A6C9-06	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105412337:105412432:105420937:105421303:105422831:105423017,	105420938	105421303	105421075	105421075	Nonsense_Mutation	G	A	p.R608X
SKCM	TCGA-GF-A6C9-06	NPHP3	ENST00000474871.1	chr3	132402242:132402368:132403397:132405231:132405994:132406070,	132403398	132405231	132403493	132403493	Nonsense_Mutation	C	A	p.E1159X
SKCM	TCGA-GF-A6C9-06	NPHP3	ENST00000326682.8,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132402242:132402368:132403397:132403638:132405103:132405231,	132403398	132403638	132403493	132403493	Nonsense_Mutation	C	A	p.E1159X
SKCM	TCGA-GF-A6C9-06	CD38	ENST00000510674.1	chr4	15818218:15818263:15826503:15826621:15835839:15835925,	15826504	15826621	15826515	15826515	Nonsense_Mutation	G	A	p.W125X
SKCM	TCGA-GF-A6C9-06	CD38	ENST00000226279.3	chr4	15818218:15818263:15826503:15826639:15835839:15835925,	15826504	15826639	15826515	15826515	Nonsense_Mutation	G	A	p.W125X
SKCM	TCGA-GF-A6C9-06	EGFLAM	ENST00000322350.5,ENST00000354891.3,ENST00000336740.6	chr5	38412605:38412750:38418167:38418357:38425068:38425194,	38418168	38418357	38418267	38418267	Nonsense_Mutation	C	T	p.Q532X
SKCM	TCGA-GF-A6C9-06	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65409525:65409780:65411971:65412140:65413343:65413480,	65411972	65412140	65412046	65412046	Nonsense_Mutation	C	T	p.R383X
SKCM	TCGA-EE-A3JA-06	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000495878.1,ENST00000393605.3,ENST00000544721.1,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72396688:72396726:72397086:72397236:72398483:72398547,	72397087	72397236	72397146	72397146	Nonsense_Mutation	G	A	p.R1426X
SKCM	TCGA-EE-A3JA-06	ARAP1	ENST00000542596.1	chr11	72396688:72396726:72397139:72397236:72398483:72398547,	72397140	72397236	72397146	72397146	Nonsense_Mutation	G	A	p.R1426X
SKCM	TCGA-EE-A3JA-06	SIK3	ENST00000375300.1,ENST00000434315.2,ENST00000375288.1,ENST00000415541.1,ENST00000413553.1,ENST00000292055.4,ENST00000445177.1	chr11	116746089:116746167:116746581:116746725:116746968:116747079,	116746582	116746725	116746668	116746668	Nonsense_Mutation	G	A	p.R327X
SKCM	TCGA-EE-A3JA-06	ARHGEF25	ENST00000333972.7,ENST00000286494.4,ENST00000471370.1	chr12	58009294:58009495:58009619:58009800:58010066:58010278,	58009620	58009800	58009767	58009767	Nonsense_Mutation	C	T	p.Q502X
SKCM	TCGA-EE-A3JA-06	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17425146:17425198:17426742:17426804:17430354:17430496,	17426743	17426804	17426787	17426787	Nonsense_Mutation	C	T	p.Q61X
SKCM	TCGA-EE-A3JA-06	UTS2	ENST00000377516.2	chr1	7906751:7906826:7907863:7907942:7909699:7909743,	7907864	7907942	7907881	7907881	Nonsense_Mutation	C	T	p.W122X
SKCM	TCGA-EE-A3JA-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57X
SKCM	TCGA-EE-A3JA-06	ANGPT4	ENST00000546022.1	chr20	868960:869082:870855:871011:896548:896960,	870856	871011	870942	870942	Nonsense_Mutation	G	A	p.Q127X
SKCM	TCGA-EE-A3JA-06	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662400	40662400	Nonsense_Mutation	G	A	p.W722X
SKCM	TCGA-EE-A3JA-06	MCAT	ENST00000290429.6	chr22	43528885:43529492:43533086:43533304:43537167:43537255,	43533087	43533304	43533179	43533179	Nonsense_Mutation	C	A	p.E213X
SKCM	TCGA-EE-A3JA-06	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781078	25781078	Nonsense_Mutation	G	A	p.R249X
SKCM	TCGA-FS-A1ZC-06	NOVA1	ENST00000267422.7,ENST00000483536.2,ENST00000549146.1,ENST00000449198.2,ENST00000539517.2,ENST00000549571.1	chr14	26918057:26918169:26941525:26941597:26949182:26949349,	26941526	26941597	26941528	26941528	Nonsense_Mutation	G	A	p.Q173X
SKCM	TCGA-FS-A1ZC-06	PTPN9	ENST00000306726.2	chr15	75762150:75762340:75763020:75763171:75766029:75766108,	75763021	75763171	75763107	75763107	Nonsense_Mutation	G	A	p.R425X
SKCM	TCGA-FS-A1ZC-06	VPS4B	ENST00000238497.5	chr18	61058095:61058309:61060641:61060782:61064266:61064357,	61060642	61060782	61060688	61060688	Nonsense_Mutation	C	T	p.W396X
SKCM	TCGA-FS-A1ZC-06	TESK2	ENST00000538496.1,ENST00000486676.1,ENST00000372084.1,ENST00000372086.3,ENST00000341771.6	chr1	45812650:45812734:45813280:45813365:45813589:45813672,	45813281	45813365	45813304	45813304	Nonsense_Mutation	G	A	p.R229X
SKCM	TCGA-EE-A17X-06	APBB1IP	ENST00000376236.4	chr10	26822367:26822454:26825002:26825146:26830510:26830621,	26825003	26825146	26825083	26825083	Nonsense_Mutation	G	A	p.W327X
SKCM	TCGA-EE-A17X-06	NAALAD2	ENST00000534061.1	chr11	89891312:89891406:89892406:89892505:89896116:89896202,	89892407	89892505	89892443	89892443	Nonsense_Mutation	G	A	p.W309X
SKCM	TCGA-EE-A17X-06	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433320:10433415:10433820:10433950:10434050:10434242,	10433821	10433950	10433932	10433932	Nonsense_Mutation	C	A	p.G340X
SKCM	TCGA-EE-A17X-06	OSBP2	ENST00000382310.3,ENST00000332585.6,ENST00000446658.2	chr22	31090194:31090331:31137147:31137356:31266415:31266600,31091362:31091540:31137147:31137356:31266415:31266600,	31137148	31137356	31137152	31137152	Nonsense_Mutation	C	T	p.Q217X
SKCM	TCGA-EE-A17X-06	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000498422.1,ENST00000469153.1	chr3	63821976:63822034:63823651:63823738:63824047:63824175,	63823652	63823738	63823682	63823682	Nonsense_Mutation	G	A	p.Q108X
SKCM	TCGA-EE-A17X-06	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835116	82835116	Nonsense_Mutation	G	A	p.W1111X
SKCM	TCGA-EE-A17X-06	RABL6	ENST00000436380.1,ENST00000311502.7,ENST00000432842.2,ENST00000357466.2,ENST00000484471.2,ENST00000425121.1,ENST00000371671.4,ENST00000371663.4,ENST00000464941.1	chr9	139720234:139720278:139722945:139722998:139723844:139723936,	139722946	139722998	139722973	139722973	Nonsense_Mutation	T	G	p.L114X
SKCM	TCGA-EB-A5SG-06	MERTK	ENST00000439966.1	chr2	112656240:112656373:112686696:112686881:112702536:112702637,	112686697	112686881	112686787	112686787	Nonsense_Mutation	T	A	p.L51X
SKCM	TCGA-EB-A5SG-06	MERTK	ENST00000421804.2	chr2	112656240:112656373:112686696:112687117:112702536:112702637,	112686697	112687117	112686787	112686787	Nonsense_Mutation	T	A	p.L51X
SKCM	TCGA-EB-A5SG-06	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101226046:101226146:101232506:101232659:101237400:101237567,	101232507	101232659	101232634	101232634	Nonsense_Mutation	C	T	p.Q555X
SKCM	TCGA-D3-A3CE-06	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44040367:44040448:44041615:44041728:44047053:44047239,	44041616	44041728	44041634	44041634	Nonsense_Mutation	C	A	p.G582X
SKCM	TCGA-GN-A263-01	PSTPIP2	ENST00000589328.1,ENST00000409746.5	chr18	43563501:43565416:43568667:43568725:43570687:43570722,	43568668	43568725	43568681	43568681	Nonsense_Mutation	G	A	p.Q334X
SKCM	TCGA-GN-A263-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000439170.2,ENST00000460856.1	chr3	124065989:124066112:124103691:124103883:124113981:124114151,	124103692	124103883	124103806	124103806	Nonsense_Mutation	C	T	p.Q627X
SKCM	TCGA-D3-A51F-06	DUSP18	ENST00000407308.1	chr22	31048082:31048284:31059390:31060067:31063448:31063796,31048082:31048284:31059390:31060067:31062793:31062925,	31059391	31060067	31059547	31059547	Nonsense_Mutation	C	T	p.W148X
SKCM	TCGA-EE-A29N-06	ACPP	ENST00000336375.5,ENST00000351273.7,ENST00000512463.1	chr3	132056299:132056398:132061395:132061488:132063770:132063903,	132061396	132061488	132061482	132061482	Nonsense_Mutation	T	G	p.Y214X
SKCM	TCGA-EE-A29N-06	NAMPT	ENST00000222553.3	chr7	105893462:105893597:105894809:105894950:105902033:105902153,	105894810	105894950	105894856	105894856	Nonsense_Mutation	A	T	p.L395X
SKCM	TCGA-FR-A3YN-06	IQCH	ENST00000358767.3,ENST00000335894.4,ENST00000360277.4,ENST00000514049.1,ENST00000546225.1	chr15	67692451:67692643:67709268:67709389:67713628:67713915,	67709269	67709389	67709357	67709357	Nonsense_Mutation	G	A	p.W729X
SKCM	TCGA-FR-A3YN-06	RTTN	ENST00000255674.6,ENST00000578780.1,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67672433:67672503:67673616:67673720:67684642:67684823,	67673617	67673720	67673641	67673641	Nonsense_Mutation	C	T	p.W2167X
SKCM	TCGA-FR-A3YN-06	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541328	187541328	Nonsense_Mutation	T	A	p.K2138X
SKCM	TCGA-FR-A3YN-06	GEMIN5	ENST00000285873.7	chr5	154311017:154311137:154311658:154311810:154315400:154315582,	154311659	154311810	154311712	154311712	Nonsense_Mutation	C	T	p.W203X
SKCM	TCGA-FR-A3YN-06	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377029	77377029	Nonsense_Mutation	G	A	p.Q1515X
SKCM	TCGA-EE-A2MC-06	SPOCK2	ENST00000463279.2,ENST00000373109.2,ENST00000536168.1,ENST00000317376.4,ENST00000469121.1,ENST00000460053.1	chr10	73822844:73822920:73823935:73823998:73826659:73826878,	73823936	73823998	73823966	73823966	Nonsense_Mutation	G	A	p.Q321X
SKCM	TCGA-EE-A2MC-06	TRIM3	ENST00000345851.3,ENST00000359518.3,ENST00000537602.1,ENST00000525074.1,ENST00000536344.1	chr11	6472121:6472290:6472500:6472668:6477301:6477374,	6472501	6472668	6472626	6472626	Nonsense_Mutation	G	A	p.R526X
SKCM	TCGA-EE-A2MC-06	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230613	46230613	Nonsense_Mutation	C	T	p.Q288X
SKCM	TCGA-EE-A2MC-06	C1orf194	ENST00000369949.4,ENST00000369942.2	chr1	109649628:109649744:109650542:109650659:109656254:109656457,	109650543	109650659	109650610	109650610	Nonsense_Mutation	C	T	p.W32X
SKCM	TCGA-EE-A2MC-06	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332868	175332868	Nonsense_Mutation	G	A	p.R895X
SKCM	TCGA-EE-A2MC-06	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	34101613:34101659:34118468:34118798:34125367:34125704,	34118469	34118798	34118710	34118710	Nonsense_Mutation	G	A	p.W440X
SKCM	TCGA-EE-A2MC-06	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100830940:100831116:100831639:100831810:100832148:100832350,	100831640	100831810	100831746	100831746	Nonsense_Mutation	G	T	p.E2910X
SKCM	TCGA-EE-A3JB-06	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50616039	50616039	Nonsense_Mutation	G	C	p.S132X
SKCM	TCGA-EE-A3JB-06	SPATA17	ENST00000366933.4	chr1	217856599:217856703:217915316:217915440:217947675:217947766,	217915317	217915440	217915408	217915408	Nonsense_Mutation	C	T	p.R163X
SKCM	TCGA-EE-A3JB-06	SPATA17	ENST00000470448.1	chr1	217856599:217856703:217915320:217915440:217947675:217947766,	217915321	217915440	217915408	217915408	Nonsense_Mutation	C	T	p.R163X
SKCM	TCGA-EE-A3JB-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903562	5903562	Nonsense_Mutation	C	T	p.R258X
SKCM	TCGA-EE-A3JB-06	IL1R2	ENST00000457817.1,ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102626183:102626288:102632332:102632513:102636099:102636274,	102632333	102632513	102632511	102632511	Nonsense_Mutation	A	T	p.K171X
SKCM	TCGA-EE-A3JB-06	TBC1D1	ENST00000446803.2,ENST00000421339.2,ENST00000261439.4	chr4	38037208:38037319:38051238:38051519:38055819:38055865,38047491:38047524:38051238:38051519:38055819:38055865,	38051239	38051519	38051434	38051434	Nonsense_Mutation	C	T	p.Q609X
SKCM	TCGA-D3-A51G-06	KIAA1217	ENST00000376462.1,ENST00000376454.3	chr10	24762156:24762989:24783428:24783533:24784075:24784125,	24783429	24783533	24783481	24783481	Nonsense_Mutation	C	T	p.Q578X
SKCM	TCGA-D3-A51G-06	HSD17B2	ENST00000199936.4,ENST00000568090.1	chr16	82104546:82104732:82124506:82124644:82131679:82131946,	82124507	82124644	82124623	82124623	Nonsense_Mutation	C	T	p.Q261X
SKCM	TCGA-D3-A51G-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
SKCM	TCGA-D3-A51G-06	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000443826.3	chr19	2997921:2997953:3000644:3000721:3002350:3002471,	3000645	3000721	3000675	3000675	Nonsense_Mutation	C	T	p.W576X
SKCM	TCGA-D3-A51G-06	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000437809.1,ENST00000361040.5,ENST00000271883.5	chr1	155792237:155792267:155796627:155796819:155823066:155823196,	155796628	155796819	155796745	155796745	Nonsense_Mutation	G	A	p.Q194X
SKCM	TCGA-D3-A51G-06	ITPKB	ENST00000429204.1,ENST00000272117.3	chr1	226819390:226822587:226825379:226825451:226827257:226827359,	226825380	226825451	226825421	226825421	Nonsense_Mutation	G	A	p.R862X
SKCM	TCGA-D3-A51G-06	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231101797:231101975:231102927:231103096:231103475:231103642,231101797:231101975:231102927:231103096:231106118:231106202,	231102928	231103096	231102934	231102934	Nonsense_Mutation	C	T	p.Q82X
SKCM	TCGA-D3-A51G-06	OCLN	ENST00000396442.2,ENST00000355237.2	chr5	68800027:68800121:68809774:68809936:68830520:68830666,68804967:68805646:68809774:68809936:68830520:68830666,	68809775	68809936	68809847	68809847	Nonsense_Mutation	C	T	p.R17X
SKCM	TCGA-D3-A51G-06	CSMD1	ENST00000519623.1,ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2857500:2857653:2875998:2876172:2886840:2887035,	2875999	2876172	2876008	2876008	Nonsense_Mutation	G	A	p.R2674X
SKCM	TCGA-D3-A51G-06	RAB11FIP1	ENST00000330843.4	chr8	37732032:37732840:37734626:37735069:37756588:37756972,	37734627	37735069	37734744	37734744	Nonsense_Mutation	G	A	p.Q233X
SKCM	TCGA-D3-A51G-06	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100533126:100533238:100568677:100568881:100587885:100588012,	100568678	100568881	100568703	100568703	Nonsense_Mutation	C	T	p.R1591X
SKCM	TCGA-EE-A2GN-06	EIF3K	ENST00000248342.4,ENST00000593149.1,ENST00000590134.1	chr19	39123069:39123136:39125632:39125758:39127528:39127564,39123240:39123318:39125632:39125758:39127528:39127564,	39125633	39125758	39125707	39125707	Nonsense_Mutation	C	T	p.Q192X
SKCM	TCGA-DA-A1I0-06	CLMP	ENST00000448775.2,ENST00000529128.1	chr11	122954387:122954555:122955219:122955421:122968502:122968660,	122955220	122955421	122955364	122955364	Nonsense_Mutation	G	A	p.R82X
SKCM	TCGA-DA-A1I0-06	FAM227B	ENST00000299338.6	chr15	49833876:49834003:49860441:49860543:49867207:49867306,	49860442	49860543	49860462	49860462	Nonsense_Mutation	G	A	p.R243X
SKCM	TCGA-EB-A44N-01	VDR	ENST00000549336.1,ENST00000550314.1,ENST00000548664.1,ENST00000550325.1,ENST00000395324.2,ENST00000546653.1,ENST00000229022.3	chr12	48251443:48251471:48258829:48258960:48272598:48272898,48251443:48251471:48258829:48258960:48272750:48272898,	48258830	48258960	48258890	48258890	Nonsense_Mutation	G	A	p.R123X
SKCM	TCGA-EB-A44N-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183817520:183817651:183817840:183818059:183821189:183821321,	183817841	183818059	183817962	183817962	Nonsense_Mutation	G	A	p.Q751X
SKCM	TCGA-EE-A2GJ-06	KCNC4	ENST00000469655.1	chr1	110768596:110768800:110774842:110775219:110775532:110776666,	110774843	110775219	110774872	110774872	Nonsense_Mutation	C	T	p.Q617X
SKCM	TCGA-EE-A2GJ-06	ABCG1	ENST00000398449.3,ENST00000361802.2,ENST00000450121.1	chr21	43639227:43639414:43645780:43646024:43691179:43691297,	43645781	43646024	43646014	43646014	Nonsense_Mutation	G	A	p.W89X
SKCM	TCGA-EE-A2GJ-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121520	12121520	Nonsense_Mutation	G	T	p.E498X
SKCM	TCGA-EE-A20H-06	CAMK2G	ENST00000305762.7,ENST00000351293.3,ENST00000472912.1,ENST00000492020.1,ENST00000423381.1,ENST00000441192.1,ENST00000322680.3,ENST00000372765.1,ENST00000433289.1,ENST00000394762.2,ENST00000322635.3	chr10	75602215:75602299:75606982:75607105:75607745:75607770,	75606983	75607105	75607051	75607051	Nonsense_Mutation	G	A	p.Q251X
SKCM	TCGA-EE-A20H-06	DOHH	ENST00000427575.1,ENST00000592858.1	chr19	3494025:3494102:3496538:3496884:3500558:3500911,	3496539	3496884	3496633	3496633	Nonsense_Mutation	G	C	p.Y60X
SKCM	TCGA-EE-A20H-06	MFN1	ENST00000480636.1	chr3	179095131:179095236:179096128:179096602:179103356:179103509,	179096129	179096602	179096489	179096489	Nonsense_Mutation	C	T	p.Q517X
SKCM	TCGA-EE-A20H-06	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589626	67589626	Nonsense_Mutation	T	G	p.Y463X
SKCM	TCGA-EE-A29L-06	TRPC6	ENST00000348423.4,ENST00000344327.3,ENST00000360497.4	chr11	101344239:101344504:101347031:101347265:101353679:101353896,	101347032	101347265	101347198	101347198	Nonsense_Mutation	C	T	p.W526X
SKCM	TCGA-EE-A29L-06	POU2F3	ENST00000543440.2,ENST00000260264.4,ENST00000533620.1	chr11	120172994:120173077:120175738:120175921:120176352:120176494,	120175739	120175921	120175796	120175796	Nonsense_Mutation	C	T	p.Q168X
SKCM	TCGA-EE-A29L-06	PMFBP1	ENST00000237353.10,ENST00000537465.1	chr16	72153749:72153988:72156812:72156887:72157444:72157548,	72156813	72156887	72156856	72156856	Nonsense_Mutation	G	A	p.R764X
SKCM	TCGA-EE-A29L-06	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654712	29654712	Nonsense_Mutation	C	T	p.Q1801X
SKCM	TCGA-EE-A29L-06	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65906992:65909303:65914829:65914954:65916130:65916259,	65914830	65914954	65914840	65914840	Nonsense_Mutation	C	T	p.Q1772X
SKCM	TCGA-EE-A29L-06	C8A	ENST00000361249.3	chr1	57341734:57341882:57347117:57347307:57349153:57349285,	57347118	57347307	57347218	57347218	Nonsense_Mutation	C	T	p.R189X
SKCM	TCGA-EE-A29L-06	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155408117:155408859:155429587:155429689:155447676:155452240,	155429588	155429689	155429669	155429669	Nonsense_Mutation	T	A	p.K1669X
SKCM	TCGA-EE-A29L-06	GGTLC1	ENST00000286890.4,ENST00000335694.4,ENST00000278765.4	chr20	23965689:23965999:23966303:23966417:23966498:23966611,	23966304	23966417	23966376	23966376	Nonsense_Mutation	C	T	p.W153X
SKCM	TCGA-EE-A29L-06	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067001	62067001	Nonsense_Mutation	G	A	p.R380X
SKCM	TCGA-EE-A29L-06	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067001	62067001	Nonsense_Mutation	G	A	p.R380X
SKCM	TCGA-EE-A29L-06	ADAMTS9	ENST00000459780.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64644177:64644467:64666876:64667039:64672243:64672286,	64666877	64667039	64666919	64666919	Nonsense_Mutation	G	A	p.Q213X
SKCM	TCGA-EE-A29L-06	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740050	35740050	Nonsense_Mutation	G	A	p.W1031X
SKCM	TCGA-EE-A29L-06	ASB6	ENST00000277458.4	chr9	132401680:132401787:132402819:132403001:132404165:132404403,	132402820	132403001	132402973	132402973	Nonsense_Mutation	G	A	p.R48X
SKCM	TCGA-EE-A182-06	ESYT1	ENST00000394048.5	chr12	56527564:56527657:56527893:56527965:56528125:56528212,	56527894	56527965	56527954	56527954	Nonsense_Mutation	C	T	p.Q512X
SKCM	TCGA-EE-A182-06	ESYT1	ENST00000541590.1,ENST00000267113.4	chr12	56527564:56527657:56527863:56527965:56528125:56528212,	56527864	56527965	56527954	56527954	Nonsense_Mutation	C	T	p.Q512X
SKCM	TCGA-EE-A182-06	TPM1	ENST00000404484.4,ENST00000317516.7,ENST00000560959.1,ENST00000558868.1,ENST00000334895.5,ENST00000559281.1	chr15	63340698:63340906:63349183:63349317:63351761:63351879,	63349184	63349317	63349295	63349295	Nonsense_Mutation	A	T	p.K118X
SKCM	TCGA-EE-A182-06	DPEP1	ENST00000421184.1,ENST00000564281.1,ENST00000261615.4,ENST00000393092.3,ENST00000565249.1	chr16	89702315:89702448:89702671:89702804:89702940:89703055,	89702672	89702804	89702702	89702702	Nonsense_Mutation	C	T	p.Q90X
SKCM	TCGA-EE-A182-06	ZNF563	ENST00000595977.1	chr19	12430000:12430125:12430243:12430647:12432085:12432146,	12430244	12430647	12430286	12430286	Nonsense_Mutation	G	A	p.R185X
SKCM	TCGA-EE-A182-06	CYP4F22	ENST00000601005.2,ENST00000269703.3	chr19	15648682:15648804:15651260:15651528:15654781:15654848,	15651261	15651528	15651427	15651427	Nonsense_Mutation	C	T	p.Q280X
SKCM	TCGA-EE-A182-06	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1	chr19	55497659:55497683:55501389:55501560:55501869:55502040,	55501390	55501560	55501423	55501423	Nonsense_Mutation	G	A	p.W777X
SKCM	TCGA-EE-A182-06	NLRP2	ENST00000540597.1	chr19	55497659:55497683:55501389:55501761:55501869:55502040,	55501390	55501761	55501423	55501423	Nonsense_Mutation	G	A	p.W777X
SKCM	TCGA-EE-A182-06	ST7L	ENST00000480988.1,ENST00000497457.1	chr1	113143415:113143470:113153462:113153625:113161530:113161563,	113153463	113153625	113153619	113153619	Nonsense_Mutation	C	A	p.E99X
SKCM	TCGA-EE-A182-06	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38103659:38103859:38104071:38104292:38105331:38105410,	38104072	38104292	38104270	38104270	Nonsense_Mutation	C	T	p.Q358X
SKCM	TCGA-EE-A182-06	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016198	167016198	Nonsense_Mutation	G	A	p.Q592X
SKCM	TCGA-EE-A182-06	NPFFR2	ENST00000358749.3	chr4	72905090:72905130:72994301:72994636:73003756:73003856,	72994302	72994636	72994359	72994359	Nonsense_Mutation	G	A	p.W20X
SKCM	TCGA-EE-A182-06	SEC24D	ENST00000379735.5	chr4	119736182:119736310:119736605:119736881:119738418:119738567,119736182:119736313:119736605:119736881:119738418:119738567,	119736606	119736881	119736660	119736660	Nonsense_Mutation	G	A	p.Q207X
SKCM	TCGA-EE-A182-06	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000478503.2,ENST00000514152.1	chr4	152065371:152065440:152069073:152069338:152070651:152070713,152065061:152065202:152069073:152069338:152070651:152070713,	152069074	152069338	152069133	152069133	Nonsense_Mutation	G	A	p.Q395X
SKCM	TCGA-EE-A182-06	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16328529	16328529	Nonsense_Mutation	G	A	p.Q5X
SKCM	TCGA-EE-A182-06	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022442	11022442	Nonsense_Mutation	C	T	p.R186X
SKCM	TCGA-EE-A182-06	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30492118	30492118	Nonsense_Mutation	C	T	p.W305X
SKCM	TCGA-EE-A182-06	TFR2	ENST00000465294.1,ENST00000462107.1,ENST00000431692.1,ENST00000474947.1	chr7	100238308:100238495:100238598:100238851:100239099:100239137,	100238599	100238851	100238815	100238815	Nonsense_Mutation	G	A	p.Q24X
SKCM	TCGA-EE-A182-06	INVS	ENST00000541287.1,ENST00000262456.2,ENST00000262457.2	chr9	102991941:102992109:103002341:103002522:103004851:103004961,	103002342	103002522	103002492	103002492	Nonsense_Mutation	C	T	p.R256X
SKCM	TCGA-EE-A182-06	SSR4	ENST00000460616.1,ENST00000485612.1,ENST00000370087.1,ENST00000370086.3,ENST00000320857.3,ENST00000486204.1,ENST00000471880.1	chrX	153061893:153062007:153062912:153062987:153063179:153063269,	153062913	153062987	153062943	153062943	Nonsense_Mutation	A	T	p.K81X
SKCM	TCGA-D9-A3Z1-06	PSG8	ENST00000600709.1	chr19	43256878:43257528:43258484:43258739:43262153:43262432,	43258485	43258739	43258631	43258631	Nonsense_Mutation	C	T	p.W244X
SKCM	TCGA-D9-A3Z1-06	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332856	175332856	Nonsense_Mutation	G	A	p.R899X
SKCM	TCGA-D9-A3Z1-06	CRELD1	ENST00000383811.3,ENST00000397170.3,ENST00000452070.1,ENST00000326434.5	chr3	9979245:9979356:9979698:9979790:9982533:9982700,	9979699	9979790	9979724	9979724	Nonsense_Mutation	C	T	p.Q132X
SKCM	TCGA-D9-A3Z1-06	ME1	ENST00000541327.1,ENST00000369705.3,ENST00000543031.1	chr6	83963347:83963457:84025028:84025132:84055891:84056053,	84025029	84025132	84025070	84025070	Nonsense_Mutation	A	C	p.Y221X
SKCM	TCGA-D9-A3Z1-06	TNFRSF11B	ENST00000521597.1,ENST00000297350.4	chr8	119936713:119937001:119938732:119938957:119940976:119941168,	119938733	119938957	119938736	119938736	Nonsense_Mutation	G	A	p.Q272X
SKCM	TCGA-GN-A267-06	C1orf127	ENST00000377008.4,ENST00000418570.2	chr1	11015046:11015243:11017641:11017810:11018770:11018809,	11017642	11017810	11017747	11017747	Nonsense_Mutation	C	A	p.G207X
SKCM	TCGA-GN-A267-06	TNR	ENST00000422274.2	chr1	175362915:175363031:175365679:175365943:175372275:175372752,175362915:175363031:175365679:175365943:175375351:175375500,	175365680	175365943	175365882	175365882	Nonsense_Mutation	C	T	p.W346X
SKCM	TCGA-GN-A267-06	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651824	99651824	Nonsense_Mutation	G	A	p.Q495X
SKCM	TCGA-GN-A267-06	DKK2	ENST00000513208.1,ENST00000285311.3,ENST00000510463.1	chr4	107845101:107845361:107845701:107845857:107846955:107847106,	107845702	107845857	107845783	107845783	Nonsense_Mutation	G	A	p.R150X
SKCM	TCGA-GN-A267-06	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127915934	127915934	Nonsense_Mutation	G	A	p.Q161X
SKCM	TCGA-DA-A1I5-06	SLC6A13	ENST00000343164.4,ENST00000445055.2	chr12	336730:336834:344255:344390:346323:346407,	344256	344390	344336	344336	Nonsense_Mutation	G	A	p.R159X
SKCM	TCGA-DA-A1I7-06	FGD4	ENST00000534526.2,ENST00000381025.3,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32754211:32754357:32755094:32755251:32760890:32761029,	32755095	32755251	32755164	32755164	Nonsense_Mutation	T	A	p.Y302X
SKCM	TCGA-DA-A1I7-06	LILRB5	ENST00000450632.1	chr19	54759148:54759445:54759905:54760178:54760351:54760520,	54759906	54760178	54759989	54759989	Nonsense_Mutation	C	T	p.W191X
SKCM	TCGA-DA-A1I7-06	LILRB5	ENST00000316219.5,ENST00000449561.2,ENST00000466581.1	chr19	54759148:54759445:54759905:54760205:54760351:54760520,	54759906	54760205	54759989	54759989	Nonsense_Mutation	C	T	p.W191X
SKCM	TCGA-DA-A1I7-06	GCFC2	ENST00000409857.3	chr2	75928315:75928413:75929438:75929549:75933648:75933770,	75929439	75929549	75929487	75929487	Nonsense_Mutation	G	A	p.Q153X
SKCM	TCGA-DA-A1I7-06	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1	chr2	75928315:75928413:75929324:75929549:75933648:75933770,	75929325	75929549	75929487	75929487	Nonsense_Mutation	G	A	p.Q153X
SKCM	TCGA-EE-A3AF-06	SLC6A13	ENST00000542272.1	chr12	351779:351920:352844:352979:369016:369223,351779:351920:352844:352979:371954:371982,	352845	352979	352917	352917	Nonsense_Mutation	C	A	p.E89X
SKCM	TCGA-EE-A3AF-06	LIN7A	ENST00000549417.1,ENST00000261203.3	chr12	81242029:81242101:81283029:81283148:81331419:81331483,	81283030	81283148	81283035	81283035	Nonsense_Mutation	G	A	p.R66X
SKCM	TCGA-EE-A3AF-06	UAP1	ENST00000367924.1,ENST00000367925.1,ENST00000271469.3	chr1	162560112:162560301:162567581:162567648:162569060:162569589,162562524:162562572:162567581:162567648:162569060:162569589,	162567582	162567648	162567610	162567610	Nonsense_Mutation	C	T	p.Q463X
SKCM	TCGA-EE-A3AF-06	SEMA5B	ENST00000393583.2	chr3	122667428:122667556:122679986:122680148:122693949:122694217,122667428:122667556:122679986:122680148:122746310:122746425,122667428:122667556:122679986:122680148:122711631:122712120,	122679987	122680148	122680022	122680022	Nonsense_Mutation	C	T	p.W84X
SKCM	TCGA-EE-A3AF-06	ST6GAL1	ENST00000169298.3,ENST00000448044.1	chr3	186756529:186756661:186760441:186761098:186769036:186769134,	186760442	186761098	186760986	186760986	Nonsense_Mutation	G	A	p.W165X
SKCM	TCGA-EE-A3AF-06	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90857303	90857303	Nonsense_Mutation	T	G	p.Y824X
SKCM	TCGA-EE-A3AF-06	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163455	163455	Nonsense_Mutation	C	T	p.Q734X
SKCM	TCGA-EE-A3AF-06	AKR1D1	ENST00000468877.2,ENST00000411726.2,ENST00000242375.3	chr7	137792160:137792326:137798435:137798518:137801365:137801612,	137798436	137798518	137798460	137798460	Nonsense_Mutation	G	T	p.E253X
SKCM	TCGA-EE-A3AF-06	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381022.2	chr9	13123151:13123297:13125214:13125389:13126514:13126589,	13125215	13125389	13125266	13125266	Nonsense_Mutation	G	A	p.Q1553X
SKCM	TCGA-EE-A2M8-06	CPE	ENST00000402744.4	chr4	166414322:166414422:166416710:166416829:166418663:166419472,	166416711	166416829	166416768	166416768	Nonsense_Mutation	C	G	p.S424X
SKCM	TCGA-EE-A180-06	OXSR1	ENST00000467900.1,ENST00000311806.3,ENST00000446845.1	chr3	38278329:38278452:38284233:38284269:38287565:38287712,	38284234	38284269	38284240	38284240	Nonsense_Mutation	C	T	p.R361X
SKCM	TCGA-D9-A6EC-06	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660959	3660959	Nonsense_Mutation	T	A	p.R234X
SKCM	TCGA-D9-A6EC-06	PNP	ENST00000361505.5,ENST00000553591.1	chr14	20942630:20942734:20942931:20943107:20943220:20943305,	20942932	20943107	20943076	20943076	Nonsense_Mutation	C	T	p.Q144X
SKCM	TCGA-D9-A6EC-06	DDHD1	ENST00000323669.5,ENST00000357758.3	chr14	53558628:53558650:53560033:53560162:53570400:53570574,	53560034	53560162	53560139	53560139	Nonsense_Mutation	G	A	p.R346X
SKCM	TCGA-D9-A6EC-06	ACSM2B	ENST00000565232.1,ENST00000566384.1,ENST00000569344.1,ENST00000567001.1	chr16	20570629:20570769:20575990:20576175:20587528:20587599,20570629:20570769:20575990:20576175:20586743:20586778,	20575991	20576175	20576146	20576146	Nonsense_Mutation	G	A	p.Q8X
SKCM	TCGA-D9-A6EC-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
SKCM	TCGA-D9-A6EC-06	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450446	55450446	Nonsense_Mutation	C	A	p.E581X
SKCM	TCGA-D9-A6EC-06	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220192336:220192421:220193329:220193563:220195688:220195860,	220193330	220193563	220193455	220193455	Nonsense_Mutation	C	T	p.W408X
SKCM	TCGA-D9-A6EC-06	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220192336:220192421:220193329:220193563:220195688:220195860,	220193330	220193563	220193456	220193456	Nonsense_Mutation	C	T	p.W408X
SKCM	TCGA-D9-A6EC-06	HNF4A	ENST00000316673.4,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000316099.4	chr20	43048360:43048516:43052657:43052894:43056974:43057097,	43052658	43052894	43052705	43052705	Nonsense_Mutation	C	T	p.Q292X
SKCM	TCGA-D9-A6EC-06	TOP3B	ENST00000444502.1,ENST00000457179.1,ENST00000357179.5,ENST00000398793.2	chr22	22321974:22322088:22322990:22323147:22324581:22324778,	22322991	22323147	22323143	22323143	Nonsense_Mutation	G	A	p.Q196X
SKCM	TCGA-D9-A6EC-06	LIMK2	ENST00000406516.1,ENST00000340552.4,ENST00000331728.4,ENST00000444929.2,ENST00000333611.4	chr22	31661931:31662118:31662969:31663056:31663761:31663893,	31662970	31663056	31663018	31663018	Nonsense_Mutation	C	T	p.R364X
SKCM	TCGA-D9-A6EC-06	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32756421:32756618:32768307:32768608:32770709:32770927,	32768308	32768608	32768572	32768572	Nonsense_Mutation	C	T	p.R4186X
SKCM	TCGA-D9-A6EC-06	ARHGAP24	ENST00000506421.1,ENST00000503995.1	chr4	86396638:86396712:86491674:86491874:86643037:86643125,	86491675	86491874	86491737	86491737	Nonsense_Mutation	C	T	p.Q15X
SKCM	TCGA-D9-A6EC-06	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352339	113352339	Nonsense_Mutation	C	T	p.R546X
SKCM	TCGA-D9-A6EC-06	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873694	35873694	Nonsense_Mutation	G	A	p.W217X
SKCM	TCGA-D9-A6EC-06	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36270114	36270114	Nonsense_Mutation	C	T	p.Q418X
SKCM	TCGA-D9-A6EC-06	ASB15	ENST00000447789.1,ENST00000540573.1,ENST00000451558.1,ENST00000434204.1,ENST00000275699.3,ENST00000451215.1	chr7	123256417:123256549:123257632:123257791:123264622:123264868,	123257633	123257791	123257651	123257651	Nonsense_Mutation	G	A	p.W104X
SKCM	TCGA-D9-A6EC-06	ADAM18	ENST00000379866.1,ENST00000265707.5	chr8	39502856:39502993:39505862:39506046:39521313:39521409,	39505863	39506046	39505984	39505984	Nonsense_Mutation	C	T	p.Q390X
SKCM	TCGA-D9-A6EC-06	CPNE3	ENST00000517490.1,ENST00000521271.1,ENST00000198765.4	chr8	87567078:87567212:87568329:87568566:87570515:87573639,	87568330	87568566	87568537	87568537	Nonsense_Mutation	C	T	p.Q488X
SKCM	TCGA-D9-A6EC-06	SNX31	ENST00000428383.2,ENST00000311812.2,ENST00000519521.1	chr8	101596338:101596416:101601093:101601207:101608866:101608934,	101601094	101601207	101601144	101601144	Nonsense_Mutation	G	A	p.Q348X
SKCM	TCGA-D9-A6EC-06	SLC45A4	ENST00000024061.3,ENST00000517878.1,ENST00000433583.2,ENST00000519067.1	chr8	142225857:142226069:142227188:142227288:142228109:142229128,	142227189	142227288	142227281	142227281	Nonsense_Mutation	G	T	p.S495X
SKCM	TCGA-DA-A1IA-06	YPEL2	ENST00000312655.4	chr17	57409081:57409185:57430575:57430887:57465687:57465731,	57430576	57430887	57430801	57430801	Nonsense_Mutation	C	T	p.Q11X
SKCM	TCGA-DA-A1IA-06	SNRK	ENST00000429705.2,ENST00000437827.1,ENST00000454177.1,ENST00000296088.7	chr3	43373660:43373802:43381778:43381991:43384835:43384970,	43381779	43381991	43381975	43381975	Nonsense_Mutation	C	T	p.R310X
SKCM	TCGA-D3-A3C1-06	XPOT	ENST00000332707.5	chr12	64814132:64814301:64815014:64815251:64816784:64816823,	64815015	64815251	64815126	64815126	Nonsense_Mutation	C	T	p.Q319X
SKCM	TCGA-FS-A1ZW-06	KHSRP	ENST00000599395.1,ENST00000595112.1,ENST00000595548.1,ENST00000398148.3	chr19	6418493:6418592:6418712:6418887:6419213:6419271,	6418713	6418887	6418802	6418802	Nonsense_Mutation	G	A	p.Q231X
SKCM	TCGA-FS-A1ZW-06	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62838946:62839840:62842558:62842693:62843400:62843491,	62842559	62842693	62842672	62842672	Nonsense_Mutation	A	T	p.K469X
SKCM	TCGA-FS-A1ZW-06	CCT7	ENST00000398422.2,ENST00000258091.5,ENST00000540468.1,ENST00000538797.1,ENST00000539919.1,ENST00000537131.1	chr2	73476118:73476307:73476946:73477044:73477433:73477566,	73476947	73477044	73477004	73477004	Nonsense_Mutation	C	T	p.R300X
SKCM	TCGA-FS-A1ZW-06	SPAG16	ENST00000374309.3,ENST00000331683.5,ENST00000452556.1,ENST00000406979.2	chr2	214727208:214727352:214794683:214794869:214878674:214878801,	214794684	214794869	214794732	214794732	Nonsense_Mutation	G	A	p.W421X
SKCM	TCGA-FS-A1ZW-06	IFT57	ENST00000264538.3	chr3	107884281:107884340:107885700:107885832:107886639:107886711,	107885701	107885832	107885736	107885736	Nonsense_Mutation	G	A	p.Q316X
SKCM	TCGA-FS-A1ZW-06	RNF130	ENST00000522208.2,ENST00000521389.1,ENST00000261947.4	chr5	179407128:179407200:179440060:179440311:179467452:179467647,	179440061	179440311	179440119	179440119	Nonsense_Mutation	C	T	p.W212X
SKCM	TCGA-FS-A1ZW-06	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91718698:91718843:91722410:91722630:91724336:91724487,	91722411	91722630	91722539	91722539	Nonsense_Mutation	G	T	p.E3155X
SKCM	TCGA-BF-A5EQ-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374867.2,ENST00000431894.1,ENST00000265371.4	chr10	33486577:33486637:33491818:33491923:33496499:33496553,	33491819	33491923	33491828	33491828	Nonsense_Mutation	G	A	p.Q619X
SKCM	TCGA-BF-A5EQ-01	LRP8	ENST00000347547.2,ENST00000480045.1,ENST00000306052.6	chr1	53712689:53712728:53715051:53715228:53716361:53716534,	53715052	53715228	53715120	53715120	Nonsense_Mutation	C	A	p.E929X
SKCM	TCGA-BF-A5EQ-01	FAHD2A	ENST00000447036.1,ENST00000233379.4	chr2	96071300:96071551:96072688:96072905:96076274:96076320,	96072689	96072905	96072702	96072702	Nonsense_Mutation	C	T	p.Q87X
SKCM	TCGA-BF-A5EQ-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580516	7580516	Nonsense_Mutation	C	T	p.Q1365X
SKCM	TCGA-BF-A5EQ-01	UPF3B	ENST00000345865.2,ENST00000276201.2	chrX	118967988:118968990:118971719:118972014:118972329:118972490,	118971720	118972014	118971734	118971734	Nonsense_Mutation	G	A	p.R430X
SKCM	TCGA-EB-A4IS-01	WT1	ENST00000527775.1,ENST00000527882.1,ENST00000332351.3,ENST00000448076.3,ENST00000379079.2	chr11	32421493:32421590:32438035:32438086:32439122:32439143,	32438036	32438086	32438053	32438053	Nonsense_Mutation	C	T	p.W116X
SKCM	TCGA-EB-A4IS-01	YBX2	ENST00000007699.5	chr17	7194411:7194501:7195344:7195378:7196793:7196857,	7195345	7195378	7195347	7195347	Nonsense_Mutation	G	A	p.Q123X
SKCM	TCGA-EB-A4IS-01	RPL22	ENST00000471204.1,ENST00000465387.1,ENST00000480661.1,ENST00000497965.1,ENST00000234875.4	chr1	6246782:6246876:6252989:6253114:6257711:6257740,	6252990	6253114	6253009	6253009	Nonsense_Mutation	C	A	p.E75X
SKCM	TCGA-EB-A4IS-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476005	32476005	Nonsense_Mutation	G	A	p.R310X
SKCM	TCGA-EB-A4IS-01	MTMR14	ENST00000430020.1	chr3	9703950:9704059:9711115:9711176:9712731:9712854,	9711116	9711176	9711175	9711175	Nonsense_Mutation	C	T	p.R185X
SKCM	TCGA-EB-A41A-01	ITGA8	ENST00000378076.3	chr10	15639205:15639298:15646206:15646354:15647722:15647790,	15646207	15646354	15646290	15646290	Nonsense_Mutation	C	A	p.E679X
SKCM	TCGA-EB-A41A-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203550	91203550	Nonsense_Mutation	C	T	p.W89X
SKCM	TCGA-EB-A41A-01	SLC22A10	ENST00000532724.1,ENST00000526800.1	chr11	63057779:63058039:63059011:63059115:63064774:63064929,63057875:63058039:63059011:63059115:63066391:63066515,	63059012	63059115	63059014	63059014	Nonsense_Mutation	G	A	p.W135X
SKCM	TCGA-EB-A41A-01	SLC41A2	ENST00000258538.3	chr12	105255068:105255148:105260209:105260357:105280070:105280217,	105260210	105260357	105260242	105260242	Nonsense_Mutation	C	T	p.W381X
SKCM	TCGA-EB-A41A-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20854605:20854782:20856063:20856222:20857396:20857456,	20856064	20856222	20856071	20856071	Nonsense_Mutation	G	A	p.Q893X
SKCM	TCGA-EB-A41A-01	PPIP5K1	ENST00000381879.4,ENST00000396923.3,ENST00000381885.1,ENST00000334933.4,ENST00000360301.4,ENST00000420765.1	chr15	43827393:43827674:43831667:43831781:43850992:43851130,	43831668	43831781	43831670	43831670	Nonsense_Mutation	C	T	p.W1141X
SKCM	TCGA-EB-A41A-01	PTPN2	ENST00000309660.5,ENST00000591115.1,ENST00000353319.4,ENST00000327283.3,ENST00000592776.1	chr18	12836822:12836890:12859162:12859253:12884071:12884197,	12859163	12859253	12859247	12859247	Nonsense_Mutation	G	A	p.R26X
SKCM	TCGA-EB-A41A-01	CCDC102B	ENST00000360242.5,ENST00000358653.5	chr18	66465316:66465418:66503985:66504606:66505942:66506163,	66503986	66504606	66504328	66504328	Nonsense_Mutation	C	T	p.R110X
SKCM	TCGA-EB-A41A-01	CYP4F2	ENST00000221700.6,ENST00000608168.1	chr19	16006315:16006460:16008223:16008422:16008835:16008881,	16008224	16008422	16008305	16008305	Nonsense_Mutation	G	C	p.Y39X
SKCM	TCGA-EB-A41A-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47808656:47808799:47809113:47809346:47810584:47810747,	47809114	47809346	47809287	47809287	Nonsense_Mutation	C	T	p.Q1261X
SKCM	TCGA-EB-A41A-01	CFLAR	ENST00000309955.3,ENST00000439154.2,ENST00000494258.1,ENST00000461422.1,ENST00000341582.6,ENST00000440180.1,ENST00000423241.2,ENST00000342795.5,ENST00000340870.5,ENST00000479953.2,ENST00000462763.1,ENST00000355558.4,ENST00000457277.1,ENST00000443227.1,ENST00000341222.6,ENST00000470178.2	chr2	201997752:201997857:202000694:202000830:202005079:202005162,	202000695	202000830	202000749	202000749	Nonsense_Mutation	C	T	p.Q52X
SKCM	TCGA-EB-A41A-01	QRICH1	ENST00000357496.2,ENST00000424300.1,ENST00000395443.2	chr3	49084501:49084679:49094294:49095323:49114141:49114471,	49094295	49095323	49095047	49095047	Nonsense_Mutation	G	A	p.Q196X
SKCM	TCGA-EB-A41A-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120155	12120155	Nonsense_Mutation	G	T	p.E43X
SKCM	TCGA-EE-A2A2-06	LCOR	ENST00000540664.1	chr10	98711859:98711953:98714709:98715591:98718168:98718272,	98714710	98715591	98715083	98715083	Nonsense_Mutation	C	T	p.Q236X
SKCM	TCGA-EE-A2A2-06	ZRANB1	ENST00000359653.4	chr10	126662768:126662967:126670277:126670398:126671743:126671873,	126670278	126670398	126670318	126670318	Nonsense_Mutation	C	T	p.Q490X
SKCM	TCGA-EE-A2A2-06	INPPL1	ENST00000540329.1	chr11	71940133:71940274:71940508:71940602:71940967:71941063,	71940509	71940602	71940600	71940600	Nonsense_Mutation	C	T	p.Q251X
SKCM	TCGA-EE-A2A2-06	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2	chr16	16280980:16281068:16282687:16282831:16284020:16284224,	16282688	16282831	16282690	16282690	Nonsense_Mutation	G	A	p.Q593X
SKCM	TCGA-EE-A2A2-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317X
SKCM	TCGA-EE-A2A2-06	SSH2	ENST00000540801.1,ENST00000269033.3	chr17	27962985:27963820:27975161:27975362:27977671:27977818,	27975162	27975362	27975269	27975269	Nonsense_Mutation	C	T	p.W413X
SKCM	TCGA-EE-A2A2-06	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891764	2891764	Nonsense_Mutation	C	T	p.Q547X
SKCM	TCGA-EE-A2A2-06	RTTN	ENST00000255674.6,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67727085:67727278:67733064:67733158:67741141:67741230,	67733065	67733158	67733128	67733128	Nonsense_Mutation	G	A	p.Q1562X
SKCM	TCGA-EE-A2A2-06	ABCA4	ENST00000370225.3,ENST00000460514.1	chr1	94485137:94485315:94486795:94486965:94487195:94487270,	94486796	94486965	94486960	94486960	Nonsense_Mutation	C	T	p.W1618X
SKCM	TCGA-EE-A2A2-06	HADHB	ENST00000537713.1,ENST00000317799.5,ENST00000425035.1,ENST00000448743.1,ENST00000405867.3,ENST00000412805.1	chr2	26477114:26477186:26477297:26477342:26486247:26486347,	26477298	26477342	26477303	26477303	Nonsense_Mutation	A	T	p.R24X
SKCM	TCGA-EE-A2A2-06	VIT	ENST00000379241.3,ENST00000457137.2,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1,ENST00000404084.1	chr2	36970242:36970399:36982063:36982197:36986111:36986189,	36982064	36982197	36982174	36982174	Nonsense_Mutation	G	A	p.W129X
SKCM	TCGA-EE-A2A2-06	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1	chr2	75928315:75928413:75929324:75929549:75933648:75933770,	75929325	75929549	75929358	75929358	Nonsense_Mutation	G	A	p.Q196X
SKCM	TCGA-EE-A2A2-06	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000487047.1	chr2	155252502:155252642:155265495:155265594:155295103:155295188,	155265496	155265594	155265592	155265592	Nonsense_Mutation	C	T	p.Q465X
SKCM	TCGA-EE-A2A2-06	WNT7A	ENST00000285018.4	chr3	13857754:13860920:13896028:13896300:13916443:13916610,	13896029	13896300	13896034	13896034	Nonsense_Mutation	G	A	p.R189X
SKCM	TCGA-EE-A2A2-06	PPP1R2	ENST00000438848.1,ENST00000328432.3	chr3	195243722:195243740:195245814:195245982:195250489:195250584,	195245815	195245982	195245818	195245818	Nonsense_Mutation	G	A	p.Q190X
SKCM	TCGA-EE-A2A2-06	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627395	29627395	Nonsense_Mutation	C	T	p.R130X
SKCM	TCGA-EE-A2A2-06	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627395	29627395	Nonsense_Mutation	C	T	p.R130X
SKCM	TCGA-EE-A2A2-06	PPP1R10	ENST00000376511.2	chr6	30568176:30569435:30569712:30570468:30570622:30570736,	30569713	30570468	30569809	30569809	Nonsense_Mutation	G	A	p.R873X
SKCM	TCGA-EE-A2A2-06	PDE7B	ENST00000308191.6	chr6	136500134:136500279:136502364:136502461:136508173:136508254,	136502365	136502461	136502374	136502374	Nonsense_Mutation	A	T	p.K320X
SKCM	TCGA-EE-A2A2-06	TTYH3	ENST00000407643.1,ENST00000403167.1,ENST00000258796.7	chr7	2691820:2691876:2692551:2692644:2695725:2695818,	2692552	2692644	2692625	2692625	Nonsense_Mutation	G	A	p.W334X
SKCM	TCGA-EE-A2A2-06	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379267	39379267	Nonsense_Mutation	C	T	p.Q180X
SKCM	TCGA-EE-A2A2-06	PTPRD	ENST00000381196.4,ENST00000486161.1,ENST00000397611.3,ENST00000537002.1,ENST00000355233.5,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000397617.3,ENST00000540109.1,ENST00000397606.3	chr9	8319830:8319966:8331581:8331736:8338921:8339047,	8331582	8331736	8331706	8331706	Nonsense_Mutation	G	A	p.Q1394X
SKCM	TCGA-EE-A2A2-06	GOLM1	ENST00000472919.1,ENST00000388711.3,ENST00000257504.6,ENST00000388712.3	chr9	88661384:88661487:88667451:88667506:88692326:88692353,	88667452	88667506	88667464	88667464	Nonsense_Mutation	G	A	p.R118X
SKCM	TCGA-FR-A3R1-01	LIMCH1	ENST00000512946.1,ENST00000313860.7,ENST00000512820.1,ENST00000396595.3,ENST00000508466.1,ENST00000503057.1,ENST00000514096.1,ENST00000511496.1,ENST00000381753.4,ENST00000513024.1,ENST00000509277.1,ENST00000508501.1	chr4	41678398:41678479:41682022:41682115:41682971:41683076,	41682023	41682115	41682063	41682063	Nonsense_Mutation	G	A	p.W636X
SKCM	TCGA-FR-A3R1-01	WNK2	ENST00000448039.1,ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96002038:96002258:96009824:96010116:96015164:96015364,	96009825	96010116	96009900	96009900	Nonsense_Mutation	C	T	p.Q540X
SKCM	TCGA-DA-A1HY-06	LCMT1	ENST00000576625.1,ENST00000380962.5,ENST00000399069.3,ENST00000572869.1	chr16	25162874:25162936:25172422:25172525:25175918:25176039,	25172423	25172525	25172473	25172473	Nonsense_Mutation	C	T	p.R173X
SKCM	TCGA-DA-A1HY-06	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156395964	156395964	Nonsense_Mutation	C	T	p.Q160X
SKCM	TCGA-DA-A1HY-06	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72189203:72189362:72189442:72189530:72192284:72192383,	72189443	72189530	72189461	72189461	Nonsense_Mutation	C	T	p.R684X
SKCM	TCGA-DA-A1HY-06	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000359206.3	chr7	87038551:87038708:87041208:87041349:87042932:87043033,	87041209	87041349	87041264	87041264	Nonsense_Mutation	G	A	p.R957X
SKCM	TCGA-D3-A3C7-06	SCNN1A	ENST00000228916.2,ENST00000360168.3,ENST00000540037.1,ENST00000396966.2,ENST00000543768.1,ENST00000338748.5	chr12	6459124:6459190:6463603:6463721:6463915:6464014,6458492:6458571:6463603:6463721:6463915:6464014,	6463604	6463721	6463605	6463605	Nonsense_Mutation	C	T	p.W512X
SKCM	TCGA-D3-A3C7-06	LRRC28	ENST00000559819.1,ENST00000447360.2,ENST00000301981.3,ENST00000558172.1,ENST00000558471.1,ENST00000561276.1,ENST00000559433.1,ENST00000558890.1	chr15	99828018:99828156:99892573:99892676:99901540:99901714,99874287:99874334:99892573:99892676:99901540:99901714,	99892574	99892676	99892588	99892588	Nonsense_Mutation	C	T	p.R203X
SKCM	TCGA-D3-A3C7-06	HEXB	ENST00000513079.1,ENST00000261416.7,ENST00000511181.1	chr5	73985152:73985298:73989463:73989529:73992517:73992564,	73989464	73989529	73989524	73989524	Nonsense_Mutation	T	A	p.L169X
SKCM	TCGA-D3-A3C7-06	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248667	141248667	Nonsense_Mutation	G	A	p.Q124X
SKCM	TCGA-D3-A3C7-06	QKI	ENST00000453779.2,ENST00000361758.4	chr6	163983013:163983101:163984451:163984751:163987752:163987827,163983013:163983101:163984451:163984751:163986977:163987827,	163984452	163984751	163984665	163984665	Nonsense_Mutation	T	A	p.L283X
SKCM	TCGA-D3-A3C7-06	QKI	ENST00000361195.2,ENST00000545607.1	chr6	163983013:163983101:163984475:163984751:163987752:163987827,	163984476	163984751	163984665	163984665	Nonsense_Mutation	T	A	p.L283X
SKCM	TCGA-D3-A3C7-06	ATP2B3	ENST00000359149.3,ENST00000370181.2,ENST00000370186.1	chrX	152830378:152830561:152835060:152835214:152845435:152846027,	152835061	152835214	152835064	152835064	Nonsense_Mutation	G	T	p.E1116X
SKCM	TCGA-D3-A3C7-06	GAB3	ENST00000496390.1,ENST00000424127.2,ENST00000475685.1,ENST00000369575.3	chrX	153906566:153906571:153908408:153908525:153924191:153924294,	153908409	153908525	153908454	153908454	Nonsense_Mutation	A	T	p.Y534X
SKCM	TCGA-ER-A19C-06	CHD2	ENST00000557381.1,ENST00000394196.4	chr15	93489267:93489446:93492181:93492306:93496586:93496803,	93492182	93492306	93492257	93492257	Nonsense_Mutation	C	T	p.R485X
SKCM	TCGA-D9-A6EA-06	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48583974:48584061:48591336:48591472:48593511:48593579,	48591337	48591472	48591433	48591433	Nonsense_Mutation	G	A	p.W1019X
SKCM	TCGA-D9-A6EA-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576865	7576865	Nonsense_Mutation	A	T	p.Y327X
SKCM	TCGA-D9-A6EA-06	ACOXL	ENST00000441974.1	chr2	111753533:111753581:111789203:111789291:111806794:111806865,111753533:111753581:111789203:111789291:111850441:111850543,	111789204	111789291	111789239	111789239	Nonsense_Mutation	G	A	p.W439X
SKCM	TCGA-D9-A6EA-06	ATP13A4	ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000392443.3	chr3	193209117:193209187:193210705:193210786:193210878:193210949,	193210706	193210786	193210749	193210749	Nonsense_Mutation	G	A	p.Q164X
SKCM	TCGA-D9-A6EA-06	STK3	ENST00000523601.1,ENST00000419617.2	chr8	99591986:99592017:99608259:99608397:99718694:99718862,	99608260	99608397	99608308	99608308	Nonsense_Mutation	A	T	p.C258X
SKCM	TCGA-BF-A5EO-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749577	33749577	Nonsense_Mutation	A	T	p.Y157X
SKCM	TCGA-BF-A5EO-01	HSD17B14	ENST00000263278.4,ENST00000599157.1	chr19	49316365:49316605:49316712:49316809:49316919:49316987,	49316713	49316809	49316733	49316733	Nonsense_Mutation	G	A	p.R207X
SKCM	TCGA-BF-A5EO-01	HSD17B14	ENST00000596349.1	chr19	49316365:49316605:49316689:49316809:49316919:49316987,	49316690	49316809	49316733	49316733	Nonsense_Mutation	G	A	p.R207X
SKCM	TCGA-BF-A5EO-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185190980:185191168:185200708:185200840:185240454:185240521,	185200709	185200840	185200722	185200722	Nonsense_Mutation	C	T	p.Q775X
SKCM	TCGA-BF-A5EO-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390888	197390888	Nonsense_Mutation	C	T	p.Q644X
SKCM	TCGA-BF-A5EO-01	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185232197:185232309:185234854:185234950:185236929:185237097,	185234855	185234950	185234931	185234931	Nonsense_Mutation	C	T	p.W302X
SKCM	TCGA-BF-A5EO-01	DNAH5	ENST00000265104.4	chr5	13716595:13716799:13717423:13717629:13718990:13719210,	13717424	13717629	13717512	13717512	Nonsense_Mutation	C	T	p.W4206X
SKCM	TCGA-BF-A5EO-01	GABRB2	ENST00000393959.1,ENST00000274547.2	chr5	160720904:160721435:160753374:160753488:160757889:160758134,	160753375	160753488	160753449	160753449	Nonsense_Mutation	G	A	p.R373X
SKCM	TCGA-BF-A5EO-01	ABCF1	ENST00000475993.1	chr6	30558082:30558155:30558311:30558938:30564345:30564956,	30558312	30558938	30558470	30558470	Nonsense_Mutation	C	T	p.R844X
SKCM	TCGA-BF-A5EO-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411902:116412043:116414934:116415165:116417442:116417523,	116414935	116415165	116414955	116414955	Nonsense_Mutation	C	T	p.Q1017X
SKCM	TCGA-BF-A5EO-01	L1CAM	ENST00000370055.1,ENST00000543994.1,ENST00000361981.3,ENST00000370060.1,ENST00000361699.4,ENST00000538883.1,ENST00000370057.3	chrX	153130753:153130955:153131158:153131274:153132103:153132326,	153131159	153131274	153131188	153131188	Nonsense_Mutation	G	A	p.Q835X
SKCM	TCGA-EE-A184-06	C9	ENST00000509186.1,ENST00000263408.4	chr5	39315876:39316131:39331777:39331916:39341247:39341395,	39331778	39331916	39331858	39331858	Nonsense_Mutation	C	A	p.G179X
SKCM	TCGA-EE-A184-06	SLC39A14	ENST00000240095.6,ENST00000289952.5,ENST00000381237.1	chr8	22262208:22262493:22265822:22266009:22269549:22269719,	22265823	22266009	22265865	22265865	Nonsense_Mutation	G	T	p.E105X
SKCM	TCGA-EE-A29V-06	ACVRL1	ENST00000388922.4,ENST00000419526.2,ENST00000550683.1	chr12	52309819:52310017:52312768:52312899:52314542:52314853,	52312769	52312899	52312851	52312851	Nonsense_Mutation	T	A	p.C443X
SKCM	TCGA-EE-A29V-06	CDC42BPB	ENST00000361246.2,ENST00000558321.1,ENST00000561271.1	chr14	103452846:103452917:103465901:103466050:103470264:103470360,	103465902	103466050	103465993	103465993	Nonsense_Mutation	C	A	p.E169X
SKCM	TCGA-EE-A29V-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198X
SKCM	TCGA-EE-A29V-06	ZNF415	ENST00000500065.4	chr19	53613129:53613161:53619565:53619686:53625914:53625996,53613129:53613161:53619565:53619686:53625656:53625865,	53619566	53619686	53619642	53619642	Nonsense_Mutation	C	T	p.W20X
SKCM	TCGA-EE-A29V-06	HADHB	ENST00000494615.1,ENST00000537713.1,ENST00000317799.5,ENST00000545822.1	chr2	26499940:26500028:26501481:26501669:26502002:26502183,	26501482	26501669	26501646	26501646	Nonsense_Mutation	C	T	p.R203X
SKCM	TCGA-EE-A29V-06	RASGRP3	ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33783277:33783403:33783738:33784097:33787795:33789672,	33783739	33784097	33783992	33783992	Nonsense_Mutation	G	A	p.W653X
SKCM	TCGA-EE-A29V-06	PPARG	ENST00000497594.1,ENST00000539812.1,ENST00000438682.1,ENST00000309576.6,ENST00000397010.2,ENST00000397000.1,ENST00000397012.2	chr3	12353886:12353952:12421202:12421430:12422820:12422891,	12421203	12421430	12421418	12421418	Nonsense_Mutation	C	T	p.Q100X
SKCM	TCGA-EE-A2GR-06	KLF6	ENST00000497571.1	chr10	3821741:3821782:3822297:3822421:3823986:3824243,3821741:3821782:3822297:3822421:3823832:3824406,	3822298	3822421	3822344	3822344	Nonsense_Mutation	G	A	p.R210X
SKCM	TCGA-EE-A2GR-06	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31138274	31138274	Nonsense_Mutation	G	A	p.Q344X
SKCM	TCGA-EE-A2GR-06	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000433979.1	chr12	18544055:18544186:18552592:18552781:18573874:18573968,	18552593	18552781	18552692	18552692	Nonsense_Mutation	G	A	p.W701X
SKCM	TCGA-EE-A2GR-06	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41347444:41347562:41348819:41348904:41350836:41350979,	41348820	41348904	41348837	41348837	Nonsense_Mutation	G	A	p.Q685X
SKCM	TCGA-EE-A2GR-06	ABCC12	ENST00000534418.1,ENST00000448542.1,ENST00000532494.1,ENST00000529504.1,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48125030:48125120:48130656:48130843:48134782:48134920,	48130657	48130843	48130780	48130780	Nonsense_Mutation	C	T	p.W1024X
SKCM	TCGA-EE-A2GR-06	UBXN11	ENST00000494942.1	chr1	26612433:26612528:26620695:26620822:26633082:26633100,26612433:26612528:26620695:26620822:26623409:26623486,26612433:26612528:26620695:26620822:26623917:26623972,	26620696	26620822	26620703	26620703	Nonsense_Mutation	C	T	p.W184X
SKCM	TCGA-EE-A2GR-06	COL24A1	ENST00000436319.1,ENST00000426639.1,ENST00000370571.2	chr1	86195764:86196375:86200431:86200647:86203078:86203188,	86200432	86200647	86200455	86200455	Nonsense_Mutation	T	A	p.K1659X
SKCM	TCGA-EE-A2GR-06	TARS2	ENST00000438568.2,ENST00000369064.3,ENST00000463555.1,ENST00000369051.3,ENST00000606933.1,ENST00000369054.2,ENST00000480070.1,ENST00000467982.2	chr1	150470977:150471140:150471372:150471510:150471691:150471711,	150471373	150471510	150471388	150471388	Nonsense_Mutation	C	T	p.Q473X
SKCM	TCGA-EE-A2GR-06	NGLY1	ENST00000467224.1	chr3	25760901:25761126:25761620:25761682:25770623:25770807,	25761621	25761682	25761670	25761670	Nonsense_Mutation	G	A	p.R500X
SKCM	TCGA-EE-A2GR-06	NGLY1	ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9,ENST00000496726.1	chr3	25760901:25761126:25761504:25761682:25770623:25770807,	25761505	25761682	25761670	25761670	Nonsense_Mutation	G	A	p.R500X
SKCM	TCGA-EE-A2GR-06	DNAJB11	ENST00000439351.1,ENST00000265028.3	chr3	186295456:186295589:186299159:186299302:186299783:186299866,	186299160	186299302	186299259	186299259	Nonsense_Mutation	C	T	p.Q186X
SKCM	TCGA-EE-A2GR-06	RWDD1	ENST00000518117.1,ENST00000392526.1,ENST00000468204.2,ENST00000368590.5,ENST00000487832.2,ENST00000466444.2	chr6	116901457:116901523:116905889:116906020:116910004:116910148,	116905890	116906020	116905895	116905895	Nonsense_Mutation	C	T	p.Q49X
SKCM	TCGA-EE-A2GR-06	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415737	86415737	Nonsense_Mutation	G	A	p.W210X
SKCM	TCGA-EE-A3J8-06	ANXA3	ENST00000503570.2,ENST00000505805.1,ENST00000264908.6,ENST00000512884.1	chr4	79522663:79522722:79525430:79525553:79531209:79531517,	79525431	79525553	79525461	79525461	Nonsense_Mutation	C	T	p.R274X
SKCM	TCGA-EE-A3J8-06	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367117	105367117	Nonsense_Mutation	C	T	p.Q348X
SKCM	TCGA-BF-A1Q0-01	CPXM2	ENST00000368854.3,ENST00000241305.3	chr10	125516728:125516868:125521387:125521685:125526488:125526668,	125521388	125521685	125521563	125521563	Nonsense_Mutation	C	T	p.W534X
SKCM	TCGA-BF-A1Q0-01	PSME3	ENST00000589469.1,ENST00000543428.1,ENST00000591722.1,ENST00000592578.1,ENST00000591152.1,ENST00000590720.1,ENST00000541124.1,ENST00000441946.2,ENST00000293362.3,ENST00000586114.1,ENST00000585805.1,ENST00000586312.1,ENST00000545225.1	chr17	40986360:40986393:40986531:40986594:40986788:40986821,	40986532	40986594	40986569	40986569	Nonsense_Mutation	T	G	p.L49X
SKCM	TCGA-D3-A1Q6-06	ABCC8	ENST00000389817.3,ENST00000526168.1,ENST00000302539.4	chr11	17415812:17415946:17416718:17416822:17417156:17417185,	17416719	17416822	17416776	17416776	Nonsense_Mutation	C	A	p.E1452X
SKCM	TCGA-D3-A1Q6-06	ABCC8	ENST00000531642.1	chr11	17415812:17415946:17416718:17417017:17417156:17417185,	17416719	17417017	17416776	17416776	Nonsense_Mutation	C	A	p.E1452X
SKCM	TCGA-D3-A1Q6-06	MCOLN1	ENST00000601003.1,ENST00000394321.5	chr19	7587572:7587667:7589846:7590052:7591324:7591492,	7589847	7590052	7589984	7589984	Nonsense_Mutation	C	T	p.R57X
SKCM	TCGA-D3-A1Q6-06	HNF4A	ENST00000316673.4,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000316099.4	chr20	43048360:43048516:43052657:43052894:43056974:43057097,	43052658	43052894	43052831	43052831	Nonsense_Mutation	C	T	p.Q334X
SKCM	TCGA-D3-A1Q6-06	CCDC93	ENST00000319432.5,ENST00000437999.1,ENST00000376300.2	chr2	118677880:118677972:118688612:118688726:118693070:118693155,	118688613	118688726	118688702	118688702	Nonsense_Mutation	T	A	p.K585X
SKCM	TCGA-D3-A1Q6-06	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619728	114619728	Nonsense_Mutation	C	T	p.Q238X
SKCM	TCGA-D3-A3MR-06	SOX5	ENST00000546136.1,ENST00000537393.1,ENST00000309359.1,ENST00000545921.1,ENST00000451604.2,ENST00000396007.2	chr12	23696144:23696318:23699249:23699358:23716191:23716337,	23699250	23699358	23699316	23699316	Nonsense_Mutation	T	A	p.K498X
SKCM	TCGA-D3-A3MR-06	MRO	ENST00000587291.1,ENST00000256425.2,ENST00000398439.3,ENST00000436348.2,ENST00000428869.2,ENST00000585524.1	chr18	48326416:48326513:48327718:48327874:48331523:48331706,	48327719	48327874	48327804	48327804	Nonsense_Mutation	C	T	p.W167X
SKCM	TCGA-D3-A3MR-06	UBAP2L	ENST00000456325.1	chr1	154193422:154193451:154197559:154197689:154199757:154199835,154193442:154193516:154197559:154197689:154199757:154199835,154193803:154193872:154197559:154197689:154199757:154199835,	154197560	154197689	154197657	154197657	Nonsense_Mutation	C	T	p.Q20X
SKCM	TCGA-D3-A3MR-06	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681105	161681105	Nonsense_Mutation	C	T	p.R131X
SKCM	TCGA-D3-A3MR-06	FCRLA	ENST00000540926.1,ENST00000367953.3,ENST00000367959.2,ENST00000236938.6	chr1	161680549:161680702:161680997:161681264:161682874:161683242,161680549:161680702:161680997:161681264:161681723:161682008,	161680998	161681264	161681105	161681105	Nonsense_Mutation	C	T	p.R131X
SKCM	TCGA-D3-A3MR-06	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45849964:45850125:45852969:45853209:45855945:45856024,	45852970	45853209	45853043	45853043	Nonsense_Mutation	C	T	p.W1015X
SKCM	TCGA-D3-A3MR-06	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233712230:233712281:233714971:233715119:233721502:233723318,	233714972	233715119	233715038	233715038	Nonsense_Mutation	C	T	p.Q1245X
SKCM	TCGA-D3-A3MR-06	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379267	39379267	Nonsense_Mutation	C	T	p.Q180X
SKCM	TCGA-D3-A3MR-06	BCL7B	ENST00000223368.2,ENST00000411832.1	chr7	72957877:72957974:72966496:72966572:72971370:72971442,72954211:72954382:72966496:72966572:72971816:72971912,72957877:72957974:72966496:72966572:72971816:72971939,	72966497	72966572	72966521	72966521	Nonsense_Mutation	C	T	p.W48X
SKCM	TCGA-EE-A2MH-06	MTDH	ENST00000521933.1	chr8	98731276:98731417:98735106:98735263:98736827:98736845,98725889:98725997:98735106:98735263:98736827:98736845,	98735107	98735263	98735188	98735188	Nonsense_Mutation	C	T	p.Q535X
SKCM	TCGA-GN-A266-06	NRP1	ENST00000395995.1,ENST00000374867.2,ENST00000374875.1,ENST00000265371.4	chr10	33475144:33475416:33481208:33481346:33486577:33486637,	33481209	33481346	33481252	33481252	Nonsense_Mutation	C	T	p.W666X
SKCM	TCGA-GN-A266-06	VSTM4	ENST00000332853.4	chr10	50226587:50227820:50255027:50255089:50256522:50256629,	50255028	50255089	50255039	50255039	Nonsense_Mutation	T	A	p.K276X
SKCM	TCGA-GN-A266-06	DUSP13	ENST00000494588.2	chr10	76863750:76863855:76867749:76868041:76868766:76868891,	76867750	76868041	76867938	76867938	Nonsense_Mutation	C	T	p.W60X
SKCM	TCGA-GN-A266-06	DUSP13	ENST00000607009.1	chr10	76863750:76863855:76867749:76867967:76868766:76868891,76865418:76865626:76867749:76867967:76868766:76868891,76857500:76857643:76867749:76867967:76868766:76868891,	76867750	76867967	76867938	76867938	Nonsense_Mutation	C	T	p.W60X
SKCM	TCGA-GN-A266-06	MMP26	ENST00000300762.1,ENST00000380390.1	chr11	5009499:5009540:5010877:5011098:5011827:5011976,	5010878	5011098	5011075	5011075	Nonsense_Mutation	G	A	p.W99X
SKCM	TCGA-GN-A266-06	ABCC9	ENST00000544039.1,ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	21968696:21968827:21970120:21970241:21971083:21971185,	21970121	21970241	21970222	21970222	Nonsense_Mutation	C	T	p.W1264X
SKCM	TCGA-GN-A266-06	RNF17	ENST00000418120.1,ENST00000255324.5	chr13	25436850:25436931:25439010:25439136:25440281:25440341,	25439011	25439136	25439030	25439030	Nonsense_Mutation	G	A	p.W1328X
SKCM	TCGA-GN-A266-06	SLC25A21	ENST00000331299.5,ENST00000555449.1	chr14	37153032:37153085:37153948:37154130:37180522:37180687,	37153949	37154130	37153959	37153959	Nonsense_Mutation	G	A	p.Q259X
SKCM	TCGA-GN-A266-06	DNAJA2	ENST00000566791.1,ENST00000563158.1,ENST00000317089.5	chr16	46998644:46998719:47001424:47001558:47001995:47002076,	47001425	47001558	47001557	47001557	Nonsense_Mutation	G	A	p.Q149X
SKCM	TCGA-GN-A266-06	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29677200:29677336:29679274:29679432:29683477:29683529,	29679275	29679432	29679366	29679366	Nonsense_Mutation	C	T	p.R2496X
SKCM	TCGA-GN-A266-06	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44060909	44060909	Nonsense_Mutation	C	T	p.Q247X
SKCM	TCGA-GN-A266-06	EFCAB13	ENST00000331493.2,ENST00000517484.1	chr17	45471390:45471465:45473199:45473343:45479497:45479569,	45473200	45473343	45473267	45473267	Nonsense_Mutation	G	A	p.W623X
SKCM	TCGA-GN-A266-06	CACNA1G	ENST00000354983.4,ENST00000507336.1,ENST00000359106.5	chr17	48696015:48696369:48697043:48697187:48701267:48701436,48696015:48696369:48697043:48697187:48699020:48699155,	48697044	48697187	48697080	48697080	Nonsense_Mutation	C	T	p.Q1895X
SKCM	TCGA-GN-A266-06	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57128574:57128689:57134235:57134415:57138392:57138469,	57134236	57134415	57134354	57134354	Nonsense_Mutation	G	A	p.R361X
SKCM	TCGA-GN-A266-06	PPP1R14A	ENST00000591585.1,ENST00000301242.4	chr19	38742945:38742978:38743533:38743614:38746778:38747012,	38743534	38743614	38743536	38743536	Nonsense_Mutation	G	A	p.Q94X
SKCM	TCGA-GN-A266-06	SAMD4B	ENST00000598913.1,ENST00000314471.6,ENST00000596368.1	chr19	39860731:39860765:39866289:39866529:39867076:39867186,	39866290	39866529	39866355	39866355	Nonsense_Mutation	C	T	p.Q245X
SKCM	TCGA-GN-A266-06	KLK5	ENST00000593428.1,ENST00000336334.3,ENST00000391809.2	chr19	51446563:51447042:51451895:51452029:51452114:51452371,	51451896	51452029	51452009	51452009	Nonsense_Mutation	G	A	p.Q205X
SKCM	TCGA-GN-A266-06	SIGLEC8	ENST00000340550.5	chr19	51958749:51958941:51960437:51960485:51961187:51961706,	51960438	51960485	51960453	51960453	Nonsense_Mutation	G	A	p.Q256X
SKCM	TCGA-GN-A266-06	GRIK3	ENST00000373091.3	chr1	37261127:37267646:37270587:37270838:37271704:37271927,	37270588	37270838	37270698	37270698	Nonsense_Mutation	G	A	p.Q819X
SKCM	TCGA-GN-A266-06	FCRL5	ENST00000361835.3,ENST00000368190.3,ENST00000368189.3	chr1	157516002:157516070:157516732:157516987:157519349:157519370,157514620:157514872:157516732:157516987:157519349:157519370,	157516733	157516987	157516808	157516808	Nonsense_Mutation	G	A	p.Q78X
SKCM	TCGA-GN-A266-06	CR2	ENST00000367057.3,ENST00000367058.3,ENST00000458541.2	chr1	207648192:207648561:207649578:207649764:207651229:207651415,	207649579	207649764	207649738	207649738	Nonsense_Mutation	G	A	p.W959X
SKCM	TCGA-GN-A266-06	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782822	207782822	Nonsense_Mutation	G	A	p.W2028X
SKCM	TCGA-GN-A266-06	PCED1A	ENST00000356872.3,ENST00000360652.2	chr20	2815959:2816355:2816684:2816960:2818877:2818998,	2816685	2816960	2816919	2816919	Nonsense_Mutation	G	A	p.Q244X
SKCM	TCGA-GN-A266-06	GALNT15	ENST00000339732.5,ENST00000437509.1	chr3	16252630:16252748:16254075:16254270:16260909:16261041,	16254076	16254270	16254142	16254142	Nonsense_Mutation	C	T	p.Q422X
SKCM	TCGA-GN-A266-06	NPHP3	ENST00000326682.8,ENST00000474871.1,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132407917:132408107:132409371:132409494:132410035:132410130,	132409372	132409494	132409388	132409388	Nonsense_Mutation	G	A	p.Q893X
SKCM	TCGA-GN-A266-06	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297758	139297758	Nonsense_Mutation	C	T	p.W46X
SKCM	TCGA-GN-A266-06	RARRES1	ENST00000237696.5	chr3	158415696:158415759:158422579:158422716:158428526:158428661,	158422580	158422716	158422676	158422676	Nonsense_Mutation	C	T	p.W192X
SKCM	TCGA-GN-A266-06	KDR	ENST00000263923.4	chr4	55968528:55968675:55970809:55971151:55971998:55972107,	55970810	55971151	55970896	55970896	Nonsense_Mutation	A	T	p.L634X
SKCM	TCGA-GN-A266-06	PRLR	ENST00000231423.3	chr5	35048876:35049513:35066050:35066204:35068317:35068387,	35066051	35066204	35066066	35066066	Nonsense_Mutation	C	A	p.E332X
SKCM	TCGA-GN-A266-06	TBX18	ENST00000606325.1,ENST00000606521.1,ENST00000606784.1,ENST00000369663.5	chr6	85457637:85457805:85466415:85466587:85469972:85470074,	85466416	85466587	85466564	85466564	Nonsense_Mutation	C	T	p.W208X
SKCM	TCGA-GN-A266-06	ENPP3	ENST00000470930.1	chr6	131971166:131971289:131973681:131973807:131979462:131979560,	131973682	131973807	131973691	131973691	Nonsense_Mutation	G	A	p.W96X
SKCM	TCGA-GN-A266-06	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468417	86468417	Nonsense_Mutation	G	A	p.W529X
SKCM	TCGA-GN-A266-06	CA1	ENST00000524324.1	chr8	86245753:86245849:86249173:86249292:86253827:86253888,	86249174	86249292	86249251	86249251	Nonsense_Mutation	G	A	p.Q93X
SKCM	TCGA-GN-A266-06	VPS13B	ENST00000496144.1,ENST00000395996.1	chr8	100515063:100515178:100519997:100520139:100523331:100523740,100519364:100519431:100519997:100520139:100523331:100523740,	100519998	100520139	100520086	100520086	Nonsense_Mutation	C	T	p.R1416X
SKCM	TCGA-GN-A266-06	CEL	ENST00000372080.4	chr9	135944442:135944646:135945847:135946045:135946373:135946557,	135945848	135946045	135946024	135946024	Nonsense_Mutation	G	A	p.W491X
SKCM	TCGA-GN-A266-06	HEPH	ENST00000441993.2,ENST00000458621.1,ENST00000419594.1	chrX	65382432:65382718:65390399:65390579:65392196:65392270,65384206:65384312:65390399:65390579:65392196:65392270,	65390400	65390579	65390523	65390523	Nonsense_Mutation	G	A	p.W40X
SKCM	TCGA-EB-A3XC-01	ABCF1	ENST00000475993.1	chr6	30558082:30558155:30558311:30558938:30564345:30564956,	30558312	30558938	30558470	30558470	Nonsense_Mutation	C	T	p.R844X
SKCM	TCGA-EB-A4P0-01	CEP70	ENST00000464035.1,ENST00000481834.1,ENST00000470159.1,ENST00000264982.3,ENST00000468900.1,ENST00000462419.1,ENST00000542237.1,ENST00000478673.1,ENST00000474781.1,ENST00000484888.1	chr3	138289276:138289340:138289875:138289999:138290107:138290195,	138289876	138289999	138289886	138289886	Nonsense_Mutation	G	A	p.Q92X
SKCM	TCGA-GF-A4EO-06	TM7SF3	ENST00000343028.4,ENST00000543882.1	chr12	27143382:27143560:27148169:27148341:27167010:27167144,27143382:27143560:27148169:27148341:27149674:27149718,	27148170	27148341	27148193	27148193	Nonsense_Mutation	G	A	p.Q223X
SKCM	TCGA-GF-A4EO-06	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180905209	180905209	Nonsense_Mutation	C	T	p.Q722X
SKCM	TCGA-GF-A4EO-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971153	21971153	Nonsense_Mutation	C	A	p.E69X
SKCM	TCGA-GF-A4EO-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971153	21971153	Nonsense_Mutation	C	A	p.E69X
SKCM	TCGA-FS-A1ZR-06	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43339358:43339487:43340589:43340689:43346939:43347097,	43340590	43340689	43340622	43340622	Nonsense_Mutation	G	A	p.R503X
SKCM	TCGA-EE-A2GC-06	NUMA1	ENST00000545721.1,ENST00000358965.6,ENST00000541584.1	chr11	71720313:71720433:71721831:71721900:71723940:71723972,	71721832	71721900	71721864	71721864	Nonsense_Mutation	G	A	p.Q1563X
SKCM	TCGA-EE-A2GC-06	OLR1	ENST00000339968.6,ENST00000539518.1,ENST00000538745.1,ENST00000309539.3	chr12	10312617:10312620:10313384:10313524:10319310:10319548,10313000:10313061:10313384:10313524:10319310:10319548,	10313385	10313524	10313505	10313505	Nonsense_Mutation	C	T	p.W148X
SKCM	TCGA-EE-A2GC-06	ACSM2B	ENST00000569163.1	chr16	20559715:20559795:20563465:20563619:20565098:20565145,20560932:20561200:20563465:20563619:20565098:20565145,	20563466	20563619	20563565	20563565	Nonsense_Mutation	C	T	p.W265X
SKCM	TCGA-EE-A2GC-06	NF1	ENST00000471572.2,ENST00000444181.2	chr17	29664834:29664898:29665019:29665157:29665721:29665823,	29665020	29665157	29665053	29665053	Nonsense_Mutation	C	T	p.Q2218X
SKCM	TCGA-EE-A2GC-06	NF1	ENST00000358273.4,ENST00000584328.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29664836:29664898:29665042:29665157:29665721:29665823,	29665043	29665157	29665053	29665053	Nonsense_Mutation	C	T	p.Q2218X
SKCM	TCGA-EE-A2GC-06	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74014526:74014681:74014994:74015141:74015608:74015734,	74014995	74015141	74015007	74015007	Nonsense_Mutation	C	T	p.W424X
SKCM	TCGA-EE-A2GC-06	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854289	40854289	Nonsense_Mutation	C	T	p.W35X
SKCM	TCGA-EE-A2GC-06	FBXO44	ENST00000251547.5,ENST00000376768.1,ENST00000376762.4	chr1	11714966:11715009:11715862:11716157:11718323:11718421,	11715863	11716157	11716079	11716079	Nonsense_Mutation	C	T	p.Q63X
SKCM	TCGA-EE-A2GC-06	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609005	179609005	Nonsense_Mutation	C	T	p.R518X
SKCM	TCGA-EE-A2GC-06	LTBP1	ENST00000415140.2	chr2	33500975:33500990:33505105:33505225:33518226:33518349,33500975:33500990:33505105:33505225:33525517:33525640,	33505106	33505225	33505208	33505208	Nonsense_Mutation	G	A	p.W706X
SKCM	TCGA-EE-A2GC-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749452	196749452	Nonsense_Mutation	G	A	p.R1874X
SKCM	TCGA-EE-A2GC-06	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25792076:25792196:25803904:25804084:25806162:25806374,	25803905	25804084	25803907	25803907	Nonsense_Mutation	G	A	p.Q652X
SKCM	TCGA-EE-A2GC-06	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82125919	82125919	Nonsense_Mutation	G	A	p.Q95X
SKCM	TCGA-EE-A2GC-06	CDH12	ENST00000504376.2,ENST00000382254.1,ENST00000517378.1	chr5	21842269:21842437:21854779:21854899:21975199:21975494,	21854780	21854899	21854885	21854885	Nonsense_Mutation	G	A	p.Q181X
SKCM	TCGA-EE-A2GC-06	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708885	91708885	Nonsense_Mutation	C	T	p.Q2472X
SKCM	TCGA-EE-A29Q-06	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17156657:17156706:17158028:17158172:17167214:17167278,	17158029	17158172	17158169	17158169	Nonsense_Mutation	G	A	p.Q570X
SKCM	TCGA-EE-A29Q-06	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51686091	51686091	Nonsense_Mutation	G	A	p.R267X
SKCM	TCGA-EE-A29Q-06	NEK5	ENST00000465811.3	chr13	52635954:52636089:52639619:52639745:52646079:52646206,	52639620	52639745	52639700	52639700	Nonsense_Mutation	C	T	p.W657X
SKCM	TCGA-EE-A29Q-06	EIF4G3	ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21205815:21206013:21212693:21212864:21220009:21220129,	21212694	21212864	21212837	21212837	Nonsense_Mutation	G	A	p.Q705X
SKCM	TCGA-EE-A29Q-06	ZC3HAV1	ENST00000464606.1,ENST00000471652.1	chr7	138768525:138768778:138774369:138774505:138793769:138794100,	138774370	138774505	138774396	138774396	Nonsense_Mutation	G	A	p.Q140X
SKCM	TCGA-ER-A2ND-06	TINAG	ENST00000259782.4	chr6	54208023:54208147:54212164:54212315:54214513:54214694,	54212165	54212315	54212203	54212203	Nonsense_Mutation	C	T	p.R263X
SKCM	TCGA-D3-A2JF-06	FNBP4	ENST00000263773.5,ENST00000528388.1,ENST00000534003.1,ENST00000527894.1	chr11	47754088:47754222:47755576:47755681:47758167:47758292,	47755577	47755681	47755678	47755678	Nonsense_Mutation	G	A	p.Q529X
SKCM	TCGA-D3-A2JF-06	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118495649:118495775:118498020:118499366:118501923:118502196,	118498021	118499366	118499023	118499023	Nonsense_Mutation	G	A	p.W495X
SKCM	TCGA-D3-A2JF-06	COPS3	ENST00000577210.1,ENST00000578317.1,ENST00000584216.1,ENST00000539941.2,ENST00000268717.5,ENST00000486810.1	chr17	17158200:17158259:17165279:17165420:17168115:17168295,17163711:17163788:17165279:17165420:17168115:17168295,	17165280	17165420	17165341	17165341	Nonsense_Mutation	A	T	p.L234X
SKCM	TCGA-D3-A2JF-06	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288614	74288614	Nonsense_Mutation	G	A	p.Q566X
SKCM	TCGA-D3-A2JF-06	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17752036:17752180:17755601:17755695:17764725:17765018,	17755602	17755695	17755626	17755626	Nonsense_Mutation	G	A	p.R119X
SKCM	TCGA-D3-A2JF-06	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21143890:21144031:21151592:21151691:21154109:21154191,	21151593	21151691	21151665	21151665	Nonsense_Mutation	C	T	p.W1376X
SKCM	TCGA-D3-A2JF-06	ANGEL2	ENST00000481918.1	chr1	213181551:213181808:213186434:213186760:213188567:213188835,	213186435	213186760	213186679	213186679	Nonsense_Mutation	C	T	p.W47X
SKCM	TCGA-D3-A2JF-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904144	5904144	Nonsense_Mutation	C	T	p.Q452X
SKCM	TCGA-D3-A2JF-06	ANKEF1	ENST00000488991.1,ENST00000378392.1,ENST00000378380.3	chr20	10023769:10023969:10025041:10025191:10026221:10026345,	10025042	10025191	10025099	10025099	Nonsense_Mutation	C	T	p.R202X
SKCM	TCGA-D3-A2JF-06	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3	chr20	46275816:46276110:46277748:46277841:46279725:46280020,	46277749	46277841	46277839	46277839	Nonsense_Mutation	C	T	p.Q1213X
SKCM	TCGA-D3-A2JF-06	NCOA3	ENST00000371998.3	chr20	46275816:46276110:46277748:46277853:46279725:46280020,	46277749	46277853	46277839	46277839	Nonsense_Mutation	C	T	p.Q1213X
SKCM	TCGA-D3-A2JF-06	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662665	40662665	Nonsense_Mutation	C	T	p.R811X
SKCM	TCGA-D3-A2JF-06	CHRNA1	ENST00000348749.5,ENST00000409219.1,ENST00000409323.1	chr2	175618946:175619142:175622293:175622403:175624058:175624103,	175622294	175622403	175622398	175622398	Nonsense_Mutation	C	T	p.W80X
SKCM	TCGA-D3-A2JF-06	CCDC36	ENST00000452691.2,ENST00000296449.5,ENST00000366429.2,ENST00000438782.1	chr3	49249198:49249269:49273980:49274155:49278658:49278822,	49273981	49274155	49274001	49274001	Nonsense_Mutation	G	A	p.W26X
SKCM	TCGA-D3-A2JF-06	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873660	35873660	Nonsense_Mutation	C	T	p.R206X
SKCM	TCGA-D3-A2JF-06	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135312720:135312859:135315091:135315218:135320328:135320405,	135315092	135315218	135315146	135315146	Nonsense_Mutation	C	T	p.Q1663X
SKCM	TCGA-D3-A2JF-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-D3-A2JF-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-ER-A2NC-06	STK24	ENST00000539966.1	chr13	99134518:99134575:99171496:99171727:99228998:99229117,99127503:99127612:99171496:99171727:99228998:99229117,	99171497	99171727	99171631	99171631	Nonsense_Mutation	G	A	p.Q59X
SKCM	TCGA-ER-A2NC-06	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17700193	17700193	Nonsense_Mutation	C	T	p.Q1311X
SKCM	TCGA-ER-A2NC-06	UBA2	ENST00000246548.4,ENST00000592841.1	chr19	34919413:34919475:34921480:34921564:34922765:34922836,	34921481	34921564	34921554	34921554	Nonsense_Mutation	C	G	p.S71X
SKCM	TCGA-ER-A2NC-06	ADAM23	ENST00000374415.3,ENST00000264377.3,ENST00000374416.1	chr2	207425851:207425936:207426926:207427017:207429743:207429792,	207426927	207427017	207426990	207426990	Nonsense_Mutation	C	T	p.Q440X
SKCM	TCGA-D9-A1JX-06	SIGLEC8	ENST00000340550.5	chr19	51958749:51958941:51960437:51960485:51961187:51961706,	51960438	51960485	51960475	51960475	Nonsense_Mutation	C	T	p.W248X
SKCM	TCGA-D9-A1JX-06	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297737	139297737	Nonsense_Mutation	C	T	p.W53X
SKCM	TCGA-FS-A1ZM-06	AGO1	ENST00000373204.4,ENST00000373206.1	chr1	36383922:36384024:36384655:36384855:36385099:36386559,	36384656	36384855	36384665	36384665	Nonsense_Mutation	C	T	p.R759X
SKCM	TCGA-ER-A2NG-06	TXNL1	ENST00000217515.6,ENST00000587613.1,ENST00000590954.1,ENST00000586262.1	chr18	54285271:54285357:54291518:54291692:54293591:54293688,	54291519	54291692	54291641	54291641	Nonsense_Mutation	G	A	p.R83X
SKCM	TCGA-ER-A2NG-06	SIGLEC7	ENST00000317643.6	chr19	51645626:51646059:51647662:51647941:51648168:51648216,	51647663	51647941	51647745	51647745	Nonsense_Mutation	G	A	p.W172X
SKCM	TCGA-ER-A2NG-06	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610700	52610700	Nonsense_Mutation	C	T	p.W1158X
SKCM	TCGA-ER-A42L-06	SLC39A12	ENST00000377374.4,ENST00000377371.3,ENST00000539911.1,ENST00000377369.2	chr10	18254411:18254619:18266830:18267003:18270240:18270412,	18266831	18267003	18266935	18266935	Nonsense_Mutation	C	T	p.Q286X
SKCM	TCGA-ER-A42L-06	ACLY	ENST00000353196.1,ENST00000537919.1	chr17	40068672:40068795:40069967:40070149:40075132:40075204,	40069968	40070149	40070007	40070007	Nonsense_Mutation	C	T	p.W40X
SKCM	TCGA-ER-A42L-06	ACLY	ENST00000393896.2,ENST00000590151.1	chr17	40068672:40068795:40069967:40070153:40075132:40075204,	40069968	40070153	40070007	40070007	Nonsense_Mutation	C	T	p.W40X
SKCM	TCGA-ER-A42L-06	TPO	ENST00000497517.2	chr2	1500366:1500537:1507719:1507851:1520654:1520751,1497573:1497811:1507719:1507851:1520654:1520751,	1507720	1507851	1507825	1507825	Nonsense_Mutation	T	A	p.L831X
SKCM	TCGA-ER-A42L-06	DQX1	ENST00000404568.3,ENST00000393951.2,ENST00000473508.1	chr2	74750465:74750664:74751049:74751434:74752135:74752329,	74751050	74751434	74751426	74751426	Nonsense_Mutation	C	T	p.W147X
SKCM	TCGA-ER-A42L-06	UROC1	ENST00000290868.2,ENST00000383579.3	chr3	126202211:126202311:126207040:126207122:126208118:126208218,	126207041	126207122	126207041	126207041	Nonsense_Mutation	C	T	p.W597X
SKCM	TCGA-ER-A42L-06	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870865	101870865	Nonsense_Mutation	C	T	p.Q1117X
SKCM	TCGA-ER-A42L-06	EIF3E	ENST00000521614.1,ENST00000220849.5,ENST00000519030.1	chr8	109215211:109215346:109215629:109215732:109226835:109226945,	109215630	109215732	109215673	109215673	Nonsense_Mutation	A	T	p.L374X
SKCM	TCGA-ER-A19O-06	ELMO1	ENST00000310758.4,ENST00000463390.1	chr7	37355523:37355564:37382216:37382367:37488277:37488459,	37382217	37382367	37382254	37382254	Nonsense_Mutation	C	T	p.W14X
SKCM	TCGA-ER-A19F-06	ANKRD30A	ENST00000374660.1,ENST00000361713.1	chr10	37451703:37451776:37454021:37454083:37455532:37455623,	37454022	37454083	37454074	37454074	Nonsense_Mutation	G	A	p.W629X
SKCM	TCGA-ER-A19F-06	BCCIP	ENST00000429863.2	chr10	127516126:127516207:127519988:127520176:127522340:127522515,	127519989	127520176	127520013	127520013	Nonsense_Mutation	C	T	p.Q146X
SKCM	TCGA-ER-A19F-06	SSH3	ENST00000532881.1,ENST00000376757.5,ENST00000308127.4,ENST00000308298.7	chr11	67074841:67074907:67075019:67075208:67075316:67075377,	67075020	67075208	67075030	67075030	Nonsense_Mutation	C	T	p.Q205X
SKCM	TCGA-ER-A19F-06	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5211600:5211779:5211975:5212261:5212347:5212502,	5211976	5212261	5212122	5212122	Nonsense_Mutation	G	A	p.Q1637X
SKCM	TCGA-ER-A19F-06	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39823046:39823565:39824368:39824545:39824812:39824936,	39824369	39824545	39824417	39824417	Nonsense_Mutation	C	T	p.Q1936X
SKCM	TCGA-ER-A19F-06	ST3GAL6	ENST00000495376.1	chr3	98491656:98491760:98492763:98492827:98503788:98503820,98491656:98491760:98492763:98492827:98501701:98501761,98491656:98491760:98492763:98492827:98502406:98502583,	98492764	98492827	98492775	98492775	Nonsense_Mutation	C	T	p.R148X
SKCM	TCGA-D9-A4Z3-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000413211.1,ENST00000360817.5,ENST00000403949.1,ENST00000423384.1,ENST00000443875.1	chr12	7169142:7169221:7169778:7169986:7170193:7170282,	7169779	7169986	7169808	7169808	Nonsense_Mutation	G	A	p.W12X
SKCM	TCGA-D9-A4Z3-01	RBM42	ENST00000262633.4,ENST00000589871.1,ENST00000360475.4,ENST00000592202.1,ENST00000588161.1	chr19	36125157:36125275:36128059:36128254:36128343:36128546,	36128060	36128254	36128155	36128155	Nonsense_Mutation	A	T	p.K411X
SKCM	TCGA-D9-A4Z3-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073649	197073649	Nonsense_Mutation	G	A	p.R1578X
SKCM	TCGA-D9-A4Z3-01	C9	ENST00000467285.1	chr5	39341657:39341802:39342192:39342298:39364489:39364597,	39342193	39342298	39342232	39342232	Nonsense_Mutation	C	T	p.W48X
SKCM	TCGA-D9-A4Z3-01	UBE3D	ENST00000430071.2,ENST00000237186.6,ENST00000369747.3,ENST00000509102.1	chr6	83602743:83602761:83667030:83667169:83728691:83728855,	83667031	83667169	83667033	83667033	Nonsense_Mutation	G	A	p.Q383X
SKCM	TCGA-DA-A3F8-06	AKIP1	ENST00000534506.1	chr11	8932745:8932770:8932990:8933218:8933999:8934080,8932745:8932770:8932990:8933218:8936372:8936477,	8932991	8933218	8933051	8933051	Nonsense_Mutation	C	T	p.Q19X
SKCM	TCGA-DA-A3F8-06	PUS7L	ENST00000551923.1,ENST00000431332.3,ENST00000416848.2,ENST00000344862.5	chr12	44123565:44124505:44125507:44125561:44130183:44130464,	44125508	44125561	44125510	44125510	Nonsense_Mutation	G	A	p.Q593X
SKCM	TCGA-DA-A3F8-06	CAB39L	ENST00000457041.1,ENST00000409308.1,ENST00000410043.1,ENST00000347776.5,ENST00000355854.4,ENST00000413278.1	chr13	49933859:49933968:49951102:49951267:49956935:49957077,	49951103	49951267	49951177	49951177	Nonsense_Mutation	G	A	p.Q68X
SKCM	TCGA-DA-A3F8-06	MYO5B	ENST00000285039.7	chr18	47431041:47431198:47432788:47433000:47438431:47438543,	47432789	47433000	47432958	47432958	Nonsense_Mutation	G	A	p.R749X
SKCM	TCGA-DA-A3F8-06	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3515899:3515983:3520868:3520982:3526408:3526537,	3520869	3520982	3520922	3520922	Nonsense_Mutation	G	A	p.W183X
SKCM	TCGA-DA-A3F8-06	MYO7B	ENST00000428314.1,ENST00000389524.4,ENST00000409816.2	chr2	128324217:128324402:128327363:128327485:128331494:128331637,	128327364	128327485	128327434	128327434	Nonsense_Mutation	C	T	p.Q181X
SKCM	TCGA-DA-A3F8-06	SLC6A3	ENST00000453492.2,ENST00000270349.9,ENST00000513308.1	chr5	1416212:1416316:1420683:1420818:1421990:1422129,	1420684	1420818	1420810	1420810	Nonsense_Mutation	C	T	p.W267X
SKCM	TCGA-DA-A3F8-06	TIAM2	ENST00000461783.3,ENST00000318981.5,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1	chr6	155448623:155448734:155450351:155451551:155458310:155458746,	155450352	155451551	155451411	155451411	Nonsense_Mutation	C	T	p.Q352X
SKCM	TCGA-DA-A3F8-06	QKI	ENST00000453779.2,ENST00000392127.2,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163876310:163876453:163899811:163899834,	163876311	163876453	163876429	163876429	Nonsense_Mutation	T	A	p.Y87X
SKCM	TCGA-DA-A3F8-06	PCSK5	ENST00000424854.2,ENST00000545128.1,ENST00000376767.3,ENST00000376752.4	chr9	78722166:78722267:78749024:78749128:78771960:78772078,	78749025	78749128	78749103	78749103	Nonsense_Mutation	G	A	p.W429X
SKCM	TCGA-EE-A2GI-06	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920788	107920788	Nonsense_Mutation	C	T	p.R136X
SKCM	TCGA-EE-A2GI-06	FGD6	ENST00000551521.1,ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95486603:95486621:95488367:95488470:95498782:95498862,	95488368	95488470	95488460	95488460	Nonsense_Mutation	C	A	p.E1170X
SKCM	TCGA-EE-A2GI-06	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43340589:43340689:43346939:43347097:43348541:43348640,	43346940	43347097	43347094	43347094	Nonsense_Mutation	G	A	p.R429X
SKCM	TCGA-EE-A2GI-06	NF1	ENST00000471572.2,ENST00000444181.2	chr17	29664834:29664898:29665019:29665157:29665721:29665823,	29665020	29665157	29665053	29665053	Nonsense_Mutation	C	T	p.Q2218X
SKCM	TCGA-EE-A2GI-06	NF1	ENST00000358273.4,ENST00000584328.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29664836:29664898:29665042:29665157:29665721:29665823,	29665043	29665157	29665053	29665053	Nonsense_Mutation	C	T	p.Q2218X
SKCM	TCGA-EE-A2GI-06	LILRB5	ENST00000450632.1	chr19	54759148:54759445:54759905:54760178:54760351:54760520,	54759906	54760178	54759988	54759988	Nonsense_Mutation	C	T	p.W191X
SKCM	TCGA-EE-A2GI-06	LILRB5	ENST00000316219.5,ENST00000449561.2,ENST00000466581.1	chr19	54759148:54759445:54759905:54760205:54760351:54760520,	54759906	54760205	54759988	54759988	Nonsense_Mutation	C	T	p.W191X
SKCM	TCGA-EE-A2GI-06	TRIM33	ENST00000358465.2,ENST00000450349.2,ENST00000448034.1,ENST00000369543.2	chr1	114970369:114970516:114973419:114973534:114976238:114976355,	114973420	114973534	114973461	114973461	Nonsense_Mutation	C	A	p.E372X
SKCM	TCGA-EE-A2GI-06	CORIN	ENST00000273857.4,ENST00000502252.1,ENST00000508498.1,ENST00000505909.1	chr4	47602230:47602364:47605413:47605685:47625587:47625762,	47605414	47605685	47605664	47605664	Nonsense_Mutation	C	T	p.W854X
SKCM	TCGA-EE-A2GI-06	TMPRSS11B	ENST00000332644.5	chr4	69093727:69093790:69094459:69094602:69094974:69095070,	69094460	69094602	69094496	69094496	Nonsense_Mutation	A	T	p.C351X
SKCM	TCGA-EE-A2GI-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58X
SKCM	TCGA-EE-A2GI-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58X
SKCM	TCGA-EE-A2MK-06	RUVBL2	ENST00000601968.1,ENST00000413176.2,ENST00000594017.1,ENST00000595090.1,ENST00000596247.1,ENST00000594338.1,ENST00000221413.6,ENST00000593570.1	chr19	49510274:49510404:49510558:49510625:49513032:49513128,	49510559	49510625	49510599	49510599	Nonsense_Mutation	C	T	p.Q146X
SKCM	TCGA-EE-A2MK-06	SIGLEC6	ENST00000359982.4	chr19	52022983:52023509:52031413:52031507:52032977:52033235,	52031414	52031507	52031506	52031506	Nonsense_Mutation	C	T	p.W338X
SKCM	TCGA-EE-A2MK-06	THBS2	ENST00000366787.3	chr6	169639693:169639790:169640546:169640687:169641856:169642053,	169640547	169640687	169640626	169640626	Nonsense_Mutation	G	C	p.S318X
SKCM	TCGA-D3-A3ML-06	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022544	64022544	Nonsense_Mutation	G	A	p.R33X
SKCM	TCGA-D3-A3ML-06	SLC15A4	ENST00000376744.4,ENST00000539703.1	chr12	129294487:129294598:129299319:129299615:129307942:129308067,129293940:129294018:129299319:129299615:129307942:129308067,	129299320	129299615	129299606	129299606	Nonsense_Mutation	G	A	p.R186X
SKCM	TCGA-D3-A3ML-06	ACSM2B	ENST00000569163.1	chr16	20559715:20559795:20563465:20563619:20565098:20565145,20560932:20561200:20563465:20563619:20565098:20565145,	20563466	20563619	20563565	20563565	Nonsense_Mutation	C	T	p.W265X
SKCM	TCGA-D3-A3ML-06	NOTUM	ENST00000409678.3	chr17	79912131:79912179:79913272:79913420:79914525:79914626,	79913273	79913420	79913316	79913316	Nonsense_Mutation	G	A	p.Q365X
SKCM	TCGA-D3-A3ML-06	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3149142:3149199:3151691:3151891:3154944:3155086,	3151692	3151891	3151782	3151782	Nonsense_Mutation	G	A	p.R585X
SKCM	TCGA-D3-A3ML-06	ABCA4	ENST00000370225.3	chr1	94495000:94495187:94495983:94496082:94496551:94496676,	94495984	94496082	94495990	94495990	Nonsense_Mutation	C	T	p.W1449X
SKCM	TCGA-D3-A3ML-06	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3,ENST00000488166.1	chr21	35138178:35138316:35140016:35140132:35144364:35144586,	35140017	35140132	35140024	35140024	Nonsense_Mutation	C	T	p.R312X
SKCM	TCGA-D3-A3ML-06	UBE2E2	ENST00000335798.4	chr3	23541098:23541231:23574044:23574192:23631224:23631713,23258752:23258803:23574044:23574192:23631224:23631713,	23574045	23574192	23574054	23574054	Nonsense_Mutation	C	T	p.R124X
SKCM	TCGA-D3-A3ML-06	MED12L	ENST00000474524.1	chr3	151129065:151129295:151130926:151131083:151134099:151134210,	151130927	151131083	151131060	151131060	Nonsense_Mutation	C	T	p.R2057X
SKCM	TCGA-D3-A3ML-06	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141721385:141721537:141722067:141722239:141724849:141724949,	141722068	141722239	141722126	141722126	Nonsense_Mutation	C	T	p.R257X
SKCM	TCGA-EE-A29R-06	CCAR1	ENST00000536012.1,ENST00000479143.2,ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543706.1,ENST00000543225.1	chr10	70517106:70517134:70520763:70520949:70525644:70525684,	70520764	70520949	70520836	70520836	Nonsense_Mutation	C	T	p.R665X
SKCM	TCGA-EE-A29R-06	WDR90	ENST00000552728.1	chr16	711890:712059:712219:712331:715678:715801,	712220	712331	712243	712243	Nonsense_Mutation	C	T	p.R1353X
SKCM	TCGA-EE-A29R-06	NPR1	ENST00000368680.3	chr1	153662759:153662858:153665581:153665673:153665827:153666468,	153665582	153665673	153665653	153665653	Nonsense_Mutation	C	T	p.R1035X
SKCM	TCGA-EE-A29R-06	PICK1	ENST00000356976.3,ENST00000432756.2,ENST00000424694.1,ENST00000484021.1,ENST00000468288.1,ENST00000472724.1,ENST00000435166.1,ENST00000404072.3	chr22	38461119:38461137:38463710:38463777:38465039:38465092,	38463711	38463777	38463714	38463714	Nonsense_Mutation	G	T	p.E96X
SKCM	TCGA-EE-A29R-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36896895	36896895	Nonsense_Mutation	G	A	p.Q1396X
SKCM	TCGA-EE-A29R-06	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123271011:123271229:123274058:123274310:123274968:123275172,	123274059	123274310	123274079	123274079	Nonsense_Mutation	C	T	p.R4624X
SKCM	TCGA-EE-A29R-06	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135968	144135968	Nonsense_Mutation	A	T	p.K947X
SKCM	TCGA-D3-A5GN-06	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000591698.1	chr19	33369914:33370284:33372749:33372919:33378657:33378747,	33372750	33372919	33372865	33372865	Nonsense_Mutation	C	A	p.E674X
SKCM	TCGA-D3-A5GN-06	MICAL3	ENST00000498573.1	chr22	18304795:18304936:18305712:18305826:18310409:18310547,18304795:18304936:18305712:18305826:18314619:18314693,	18305713	18305826	18305764	18305764	Nonsense_Mutation	C	A	p.E1086X
SKCM	TCGA-D3-A5GN-06	PTPRD	ENST00000381196.4,ENST00000486161.1,ENST00000397611.3,ENST00000537002.1,ENST00000355233.5,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000397617.3,ENST00000540109.1,ENST00000397606.3	chr9	8319830:8319966:8331581:8331736:8338921:8339047,	8331582	8331736	8331706	8331706	Nonsense_Mutation	G	A	p.Q1394X
SKCM	TCGA-D3-A5GN-06	MTMR1	ENST00000370390.3,ENST00000445323.2,ENST00000544228.1,ENST00000541925.1	chrX	149919501:149919712:149924160:149924337:149931037:149931210,149919263:149919315:149924160:149924337:149931037:149931210,	149924161	149924337	149924335	149924335	Nonsense_Mutation	C	T	p.Q611X
SKCM	TCGA-D3-A51J-06	MYO15A	ENST00000433411.3,ENST00000205890.5,ENST00000418233.3	chr17	18067055:18067152:18069674:18069835:18070903:18071035,	18069675	18069835	18069781	18069781	Nonsense_Mutation	G	A	p.W3298X
SKCM	TCGA-D3-A51J-06	CA10	ENST00000570565.1,ENST00000340813.6,ENST00000451037.2,ENST00000285273.4,ENST00000442502.2,ENST00000575181.1,ENST00000571371.1	chr17	49824992:49825178:50008349:50008492:50149678:50149753,	50008350	50008492	50008459	50008459	Nonsense_Mutation	C	T	p.W57X
SKCM	TCGA-RP-A694-06	LUZP2	ENST00000336930.6,ENST00000533227.1	chr11	25004671:25004839:25071583:25071676:25098874:25098952,	25071584	25071676	25071620	25071620	Nonsense_Mutation	C	T	p.Q268X
SKCM	TCGA-RP-A694-06	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854290	40854290	Nonsense_Mutation	C	T	p.W35X
SKCM	TCGA-RP-A694-06	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186101459:186101541:186105799:186106069:186106629:186106800,	186105800	186106069	186106021	186106021	Nonsense_Mutation	C	T	p.R4512X
SKCM	TCGA-RP-A694-06	TNIK	ENST00000284483.8,ENST00000470834.1,ENST00000369326.5,ENST00000436636.2,ENST00000357327.5	chr3	170843700:170843940:170846502:170846667:170855979:170856168,	170846503	170846667	170846538	170846538	Nonsense_Mutation	G	A	p.R551X
SKCM	TCGA-EB-A4OY-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53662807:53663869:53664161:53664266:53664461:53664582,	53664162	53664266	53664186	53664186	Nonsense_Mutation	C	T	p.Q390X
SKCM	TCGA-EB-A4OY-01	HIRIP3	ENST00000563053.1	chr16	30004969:30005129:30005968:30006164:30006423:30006538,	30005969	30006164	30006059	30006059	Nonsense_Mutation	G	C	p.S136X
SKCM	TCGA-EB-A4OY-01	HIRIP3	ENST00000279392.3	chr16	30004969:30005129:30005226:30006164:30006423:30006538,	30005227	30006164	30006059	30006059	Nonsense_Mutation	G	C	p.S136X
SKCM	TCGA-EB-A4OY-01	TRAF3IP1	ENST00000373327.4	chr2	239247002:239247098:239253137:239253239:239256095:239256116,	239253138	239253239	239253162	239253162	Nonsense_Mutation	C	G	p.S395X
SKCM	TCGA-ER-A19E-06	TBATA	ENST00000299290.1	chr10	72532269:72532322:72533968:72534113:72534944:72535026,	72533969	72534113	72533991	72533991	Nonsense_Mutation	C	A	p.E299X
SKCM	TCGA-ER-A19E-06	CSTF3	ENST00000323959.4	chr11	33120579:33120696:33121153:33121263:33123722:33123885,	33121154	33121263	33121205	33121205	Nonsense_Mutation	A	C	p.Y295X
SKCM	TCGA-ER-A19E-06	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42046634:42046765:42049985:42050037:42052520:42052727,	42049986	42050037	42050032	42050032	Nonsense_Mutation	C	T	p.R2396X
SKCM	TCGA-ER-A19E-06	TTC21B	ENST00000464374.1,ENST00000243344.7	chr2	166802033:166802200:166805903:166806014:166806104:166806234,	166805904	166806014	166805994	166805994	Nonsense_Mutation	G	A	p.R58X
SKCM	TCGA-ER-A19E-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103547	168103547	Nonsense_Mutation	G	A	p.W1660X
SKCM	TCGA-ER-A19E-06	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119912141:119912271:119962486:119962623:119962849:119962963,	119962487	119962623	119962558	119962558	Nonsense_Mutation	C	T	p.W54X
SKCM	TCGA-ER-A19E-06	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119912141:119912271:119962486:119962623:119962849:119962963,	119962487	119962623	119962559	119962559	Nonsense_Mutation	C	T	p.W54X
SKCM	TCGA-ER-A19E-06	SLC22A23	ENST00000380302.4,ENST00000467177.1,ENST00000467144.1,ENST00000406686.3,ENST00000485307.1,ENST00000436008.2,ENST00000497691.1,ENST00000490273.1	chr6	3287217:3287325:3289997:3290100:3298324:3298452,	3289998	3290100	3289998	3289998	Nonsense_Mutation	G	T	p.S157X
SKCM	TCGA-ER-A3PL-06	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228486959:228487223:228487582:228487846:228491375:228491639,	228487583	228487846	228487685	228487685	Nonsense_Mutation	G	A	p.W4526X
SKCM	TCGA-ER-A3PL-06	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557805	210557805	Nonsense_Mutation	G	A	p.W304X
SKCM	TCGA-ER-A3PL-06	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557805	210557805	Nonsense_Mutation	G	A	p.W304X
SKCM	TCGA-ER-A3PL-06	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579458	82579458	Nonsense_Mutation	C	T	p.W3482X
SKCM	TCGA-ER-A3PL-06	CNTRL	ENST00000373845.2,ENST00000373855.1,ENST00000238341.5,ENST00000373850.1	chr9	123924133:123924249:123924331:123924549:123927220:123927378,	123924332	123924549	123924522	123924522	Nonsense_Mutation	G	A	p.W1799X
SKCM	TCGA-ER-A19W-06	PTPRF	ENST00000422171.2,ENST00000414879.1	chr1	44058127:44058272:44064390:44064584:44069086:44069198,	44064391	44064584	44064457	44064457	Nonsense_Mutation	G	A	p.W729X
SKCM	TCGA-ER-A19W-06	ITLN1	ENST00000326245.3	chr1	160850377:160850498:160850943:160851102:160851746:160851772,	160850944	160851102	160851026	160851026	Nonsense_Mutation	C	T	p.W161X
SKCM	TCGA-ER-A19W-06	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000505747.1	chr2	39996040:39996233:39996849:39997259:39998644:39998780,39995563:39995641:39996849:39997259:39998644:39998780,	39996850	39997259	39997187	39997187	Nonsense_Mutation	C	T	p.W112X
SKCM	TCGA-ER-A19W-06	THUMPD2	ENST00000530522.1	chr2	39995563:39995641:39996897:39997259:39998654:39998780,	39996898	39997259	39997187	39997187	Nonsense_Mutation	C	T	p.W112X
SKCM	TCGA-ER-A19W-06	PIP5K1B	ENST00000478500.1,ENST00000541509.1,ENST00000440050.1,ENST00000437200.1,ENST00000265382.3	chr9	71478752:71478883:71491592:71491710:71503896:71504049,	71491593	71491710	71491666	71491666	Nonsense_Mutation	C	T	p.R92X
SKCM	TCGA-ER-A19W-06	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051720	96051720	Nonsense_Mutation	C	T	p.Q1562X
SKCM	TCGA-EE-A3AE-06	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151832	31151832	Nonsense_Mutation	C	T	p.W711X
SKCM	TCGA-EE-A3AE-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
SKCM	TCGA-EE-A3AE-06	CTNNBL1	ENST00000361383.6,ENST00000373469.1,ENST00000405275.2,ENST00000473857.1,ENST00000373473.1	chr20	36406055:36406114:36407588:36407737:36431268:36431450,	36407589	36407737	36407715	36407715	Nonsense_Mutation	C	T	p.Q337X
SKCM	TCGA-EE-A3AE-06	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38913242:38913364:38917227:38917346:38919093:38919296,	38917228	38917346	38917251	38917251	Nonsense_Mutation	G	A	p.W4051X
SKCM	TCGA-EE-A3AE-06	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411902:116412043:116414934:116415165:116417442:116417523,	116414935	116415165	116414937	116414937	Nonsense_Mutation	C	T	p.Q1011X
SKCM	TCGA-EE-A3AE-06	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000520845.1,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95866032:95866143:95869004:95869206:95871738:95871860,	95869005	95869206	95869077	95869077	Nonsense_Mutation	C	T	p.Q609X
SKCM	TCGA-EE-A3AA-06	GRIK4	ENST00000438375.2,ENST00000527524.2	chr11	120837903:120838032:120852814:120852933:120856612:120857970,	120852815	120852933	120852905	120852905	Nonsense_Mutation	G	A	p.W829X
SKCM	TCGA-EE-A3AA-06	DDX3X	ENST00000457138.2	chrX	41193426:41193550:41196660:41196718:41200736:41200869,	41196661	41196718	41196686	41196686	Nonsense_Mutation	C	A	p.S24X
SKCM	TCGA-EE-A2A1-06	NUDT7	ENST00000564085.1	chr16	77759327:77759481:77769724:77769883:77775478:77775721,77759327:77759481:77769724:77769883:77770546:77770640,	77769725	77769883	77769818	77769818	Nonsense_Mutation	G	T	p.E95X
SKCM	TCGA-EE-A2A1-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904294	5904294	Nonsense_Mutation	C	T	p.Q502X
SKCM	TCGA-EE-A2A1-06	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39165929:39166073:39171365:39171627:39175945:39176084,	39171366	39171627	39171399	39171399	Nonsense_Mutation	G	A	p.Q434X
SKCM	TCGA-EB-A431-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4,ENST00000538146.1	chr10	29770512:29770657:29773584:29773760:29775013:29775159,	29773585	29773760	29773697	29773697	Nonsense_Mutation	G	A	p.Q1189X
SKCM	TCGA-EB-A431-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635443	33635443	Nonsense_Mutation	C	T	p.Q743X
SKCM	TCGA-EB-A431-01	AMDHD2	ENST00000568263.1,ENST00000413459.3	chr16	2578994:2579096:2579475:2579526:2580257:2580492,	2579476	2579526	2579508	2579508	Nonsense_Mutation	C	T	p.Q422X
SKCM	TCGA-EB-A431-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342X
SKCM	TCGA-EB-A431-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699077	17699077	Nonsense_Mutation	C	T	p.Q939X
SKCM	TCGA-EB-A431-01	FCAR	ENST00000391725.3,ENST00000345937.4,ENST00000355524.3,ENST00000469767.1	chr19	55385745:55385779:55386785:55386821:55396646:55396937,	55386786	55386821	55386809	55386809	Nonsense_Mutation	C	T	p.Q20X
SKCM	TCGA-EB-A431-01	PRDX1	ENST00000262746.1,ENST00000372079.1,ENST00000319248.8	chr1	45977004:45977086:45980178:45980309:45980544:45980567,	45980179	45980309	45980212	45980212	Nonsense_Mutation	G	A	p.Q161X
SKCM	TCGA-EB-A431-01	GTF3C2	ENST00000264720.3	chr2	27565857:27566014:27566174:27566445:27579605:27579634,	27566175	27566445	27566214	27566214	Nonsense_Mutation	G	A	p.Q70X
SKCM	TCGA-EB-A431-01	MAP4K4	ENST00000350198.4	chr2	102501648:102501749:102503549:102503723:102504239:102504399,	102503550	102503723	102503607	102503607	Nonsense_Mutation	C	T	p.Q1082X
SKCM	TCGA-EB-A431-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102501648:102501749:102503549:102503699:102504239:102504399,	102503550	102503699	102503607	102503607	Nonsense_Mutation	C	T	p.Q1082X
SKCM	TCGA-EB-A431-01	SACM1L	ENST00000455997.1	chr3	45773544:45773643:45776737:45776865:45779074:45779144,	45776738	45776865	45776851	45776851	Nonsense_Mutation	C	T	p.Q409X
SKCM	TCGA-EB-A431-01	SACM1L	ENST00000389061.5,ENST00000541314.1,ENST00000433336.1,ENST00000441228.1,ENST00000418611.1	chr3	45773544:45773643:45776726:45776865:45779074:45779144,	45776727	45776865	45776851	45776851	Nonsense_Mutation	C	T	p.Q409X
SKCM	TCGA-EB-A431-01	AMOTL2	ENST00000506326.1,ENST00000422605.2,ENST00000514516.1,ENST00000249883.5,ENST00000513145.1	chr3	134080353:134080649:134084658:134084751:134085124:134085269,	134084659	134084751	134084701	134084701	Nonsense_Mutation	G	A	p.Q413X
SKCM	TCGA-EB-A431-01	RARRES1	ENST00000237696.5	chr3	158415696:158415759:158422579:158422716:158428526:158428661,	158422580	158422716	158422641	158422641	Nonsense_Mutation	C	T	p.W204X
SKCM	TCGA-EB-A431-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100403784:100403932:100443764:100443892:100454628:100454639,	100443765	100443892	100443865	100443865	Nonsense_Mutation	G	A	p.W1061X
SKCM	TCGA-FR-A3YO-06	FOLH1	ENST00000340334.7,ENST00000356696.3,ENST00000533034.1,ENST00000256999.2	chr11	49204700:49204794:49207220:49207407:49208195:49208320,	49207221	49207407	49207395	49207395	Nonsense_Mutation	G	A	p.Q203X
SKCM	TCGA-FR-A3YO-06	TRPC6	ENST00000360497.4	chr11	101353679:101353896:101362286:101362469:101374754:101374821,	101362287	101362469	101362289	101362289	Nonsense_Mutation	T	A	p.K376X
SKCM	TCGA-FR-A3YO-06	AP3B2	ENST00000535359.1,ENST00000261722.3,ENST00000535348.1,ENST00000543938.1	chr15	83330919:83331004:83331445:83331674:83331878:83331985,	83331446	83331674	83331464	83331464	Nonsense_Mutation	G	A	p.Q920X
SKCM	TCGA-FR-A3YO-06	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349481	89349481	Nonsense_Mutation	C	A	p.E1157X
SKCM	TCGA-FR-A3YO-06	PER1	ENST00000581082.1,ENST00000354903.5,ENST00000582719.1,ENST00000317276.4	chr17	8048068:8048165:8049275:8049455:8049689:8049806,8048077:8048311:8049275:8049455:8049689:8049806,	8049276	8049455	8049363	8049363	Nonsense_Mutation	T	A	p.K711X
SKCM	TCGA-FR-A3YO-06	MRC2	ENST00000303375.5,ENST00000583597.1,ENST00000446119.2	chr17	60765649:60765764:60765861:60766025:60766212:60766321,	60765862	60766025	60765904	60765904	Nonsense_Mutation	G	A	p.W1035X
SKCM	TCGA-FR-A3YO-06	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118649	58118649	Nonsense_Mutation	C	T	p.Q586X
SKCM	TCGA-FR-A3YO-06	GPATCH2	ENST00000366935.3,ENST00000366934.3	chr1	217783662:217783742:217784230:217784413:217787482:217787544,	217784231	217784413	217784272	217784272	Nonsense_Mutation	A	C	p.L326X
SKCM	TCGA-FR-A3YO-06	CNTN4	ENST00000422330.1,ENST00000418658.1,ENST00000455083.1,ENST00000397461.1,ENST00000427741.1	chr3	2380861:2380917:2613099:2613242:2777898:2778007,	2613100	2613242	2613201	2613201	Nonsense_Mutation	G	A	p.W5X
SKCM	TCGA-FR-A3YO-06	CNTN4	ENST00000422330.1,ENST00000418658.1,ENST00000455083.1,ENST00000397461.1,ENST00000427741.1	chr3	2380861:2380917:2613099:2613242:2777898:2778007,	2613100	2613242	2613202	2613202	Nonsense_Mutation	G	A	p.W5X
SKCM	TCGA-FR-A3YO-06	MLF1	ENST00000482628.1,ENST00000355893.5,ENST00000495452.1,ENST00000359117.5,ENST00000484955.1,ENST00000487838.1	chr3	158288983:158289180:158314650:158314734:158315868:158315949,158310222:158310370:158314650:158314734:158315868:158315949,	158314651	158314734	158314672	158314672	Nonsense_Mutation	C	T	p.Q63X
SKCM	TCGA-FR-A3YO-06	YTHDC1	ENST00000355665.3,ENST00000579690.1,ENST00000344157.4	chr4	69184543:69184580:69185840:69185923:69188466:69188633,	69185841	69185923	69185919	69185919	Nonsense_Mutation	G	A	p.R536X
SKCM	TCGA-FR-A3YO-06	SYNJ2	ENST00000367121.3,ENST00000367122.2,ENST00000355585.4	chr6	158438235:158438322:158449787:158450058:158454486:158454712,	158449788	158450058	158450041	158450041	Nonsense_Mutation	G	A	p.W156X
SKCM	TCGA-EE-A29D-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61833981	61833981	Nonsense_Mutation	G	A	p.Q2220X
SKCM	TCGA-EE-A29D-06	PLEKHS1	ENST00000369312.4	chr10	115515017:115515064:115526169:115526258:115526370:115526458,115515017:115515164:115526169:115526258:115526370:115526477,	115526170	115526258	115526241	115526241	Nonsense_Mutation	C	T	p.Q28X
SKCM	TCGA-EE-A29D-06	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844719	123844719	Nonsense_Mutation	C	T	p.Q902X
SKCM	TCGA-EE-A29D-06	SPATS2	ENST00000552655.1,ENST00000549412.1,ENST00000552557.1,ENST00000321898.6,ENST00000553127.1,ENST00000552918.1	chr12	49884464:49884514:49888523:49888785:49890615:49890672,	49888524	49888785	49888605	49888605	Nonsense_Mutation	C	T	p.Q116X
SKCM	TCGA-EE-A29D-06	METTL25	ENST00000248306.3,ENST00000548432.1	chr12	82850505:82850599:82870422:82870497:82871059:82871131,	82870423	82870497	82870468	82870468	Nonsense_Mutation	C	T	p.R540X
SKCM	TCGA-EE-A29D-06	ATG2B	ENST00000359933.4	chr14	96798837:96798992:96800024:96800210:96800741:96800838,	96800025	96800210	96800166	96800166	Nonsense_Mutation	G	A	p.R356X
SKCM	TCGA-EE-A29D-06	ANP32A	ENST00000495420.1,ENST00000560303.1	chr15	69079751:69079874:69080108:69080258:69113036:69113207,	69080109	69080258	69080189	69080189	Nonsense_Mutation	C	A	p.E42X
SKCM	TCGA-EE-A29D-06	LUC7L	ENST00000397783.1,ENST00000426094.1,ENST00000293872.8,ENST00000337351.4,ENST00000419516.1,ENST00000418978.1,ENST00000397780.1,ENST00000495349.1,ENST00000490762.1,ENST00000464711.1,ENST00000430864.1	chr16	242925:243014:249060:249237:256002:256086,	249061	249237	249084	249084	Nonsense_Mutation	G	A	p.R222X
SKCM	TCGA-EE-A29D-06	THOC6	ENST00000575576.1,ENST00000574549.1,ENST00000326266.8	chr16	3077170:3077281:3077366:3077501:3077577:3077723,	3077367	3077501	3077382	3077382	Nonsense_Mutation	C	T	p.Q276X
SKCM	TCGA-EE-A29D-06	ABCC3	ENST00000510891.1,ENST00000513745.1,ENST00000510633.1,ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48752722:48752837:48752991:48753136:48753243:48753451,	48752992	48753136	48753110	48753110	Nonsense_Mutation	C	T	p.Q945X
SKCM	TCGA-EE-A29D-06	TNRC6C	ENST00000301624.4,ENST00000541771.1,ENST00000588061.1	chr17	76089700:76089844:76094423:76094618:76098554:76098625,	76094424	76094618	76094577	76094577	Nonsense_Mutation	G	A	p.W1487X
SKCM	TCGA-EE-A29D-06	PLD3	ENST00000409735.4,ENST00000409587.1,ENST00000409281.1,ENST00000356508.5,ENST00000409419.1	chr19	40876016:40876144:40877579:40877780:40880387:40880527,	40877580	40877780	40877667	40877667	Nonsense_Mutation	C	T	p.Q256X
SKCM	TCGA-EE-A29D-06	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507177	74507177	Nonsense_Mutation	G	A	p.Q480X
SKCM	TCGA-EE-A29D-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57X
SKCM	TCGA-EE-A29D-06	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438107	9438107	Nonsense_Mutation	C	T	p.Q1003X
SKCM	TCGA-EE-A29D-06	KIAA1211L	ENST00000462314.1	chr2	99443450:99443632:99448810:99448975:99454581:99454750,	99448811	99448975	99448966	99448966	Nonsense_Mutation	G	A	p.Q129X
SKCM	TCGA-EE-A29D-06	ACSL3	ENST00000392066.3	chr2	223752547:223752606:223773450:223773868:223781036:223781214,	223773451	223773868	223773638	223773638	Nonsense_Mutation	G	T	p.E50X
SKCM	TCGA-EE-A29D-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36899454	36899454	Nonsense_Mutation	G	A	p.Q543X
SKCM	TCGA-EE-A29D-06	SCFD2	ENST00000388940.4,ENST00000401642.3	chr4	54011499:54011749:54139992:54140168:54179802:54179930,	54139993	54140168	54139995	54139995	Nonsense_Mutation	G	A	p.Q437X
SKCM	TCGA-EE-A29D-06	NAIP	ENST00000194097.4,ENST00000508426.2,ENST00000517649.1	chr5	70299602:70299684:70307101:70307201:70308174:70308745,	70307102	70307201	70307129	70307129	Nonsense_Mutation	C	T	p.W214X
SKCM	TCGA-EE-A29D-06	FBXW11	ENST00000296933.6,ENST00000523843.1,ENST00000393802.2,ENST00000522376.1,ENST00000265094.5,ENST00000425623.2	chr5	171297751:171297862:171299875:171299994:171303288:171303295,	171299876	171299994	171299925	171299925	Nonsense_Mutation	G	A	p.Q376X
SKCM	TCGA-EE-A29D-06	ICA1	ENST00000402384.3,ENST00000455539.1,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8178614:8178677:8181394:8181447:8183504:8183602,	8181395	8181447	8181422	8181422	Nonsense_Mutation	G	A	p.Q310X
SKCM	TCGA-EE-A29D-06	FBXO24	ENST00000465843.1,ENST00000360609.2	chr7	100187599:100187698:100187796:100187938:100189289:100189525,	100187797	100187938	100187894	100187894	Nonsense_Mutation	G	A	p.W67X
SKCM	TCGA-EE-A29D-06	FBXO24	ENST00000474649.1,ENST00000241071.6,ENST00000466053.1,ENST00000468962.1,ENST00000427939.2,ENST00000498195.1	chr7	100187599:100187698:100187796:100187980:100189289:100189469,	100187797	100187980	100187894	100187894	Nonsense_Mutation	G	A	p.W67X
SKCM	TCGA-EE-A29D-06	FAM71F2	ENST00000474069.1,ENST00000434001.2,ENST00000378704.3,ENST00000480462.1	chr7	128315701:128315913:128317617:128317867:128320084:128320203,	128317618	128317867	128317745	128317745	Nonsense_Mutation	C	T	p.Q165X
SKCM	TCGA-EE-A29D-06	CA1	ENST00000520093.1,ENST00000523022.1,ENST00000517429.1	chr8	86250648:86250678:86253827:86253888:86290274:86290337,	86253828	86253888	86253848	86253848	Nonsense_Mutation	C	T	p.W6X
SKCM	TCGA-FS-A1ZZ-06	SLC6A12	ENST00000545058.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	300233:300377:301643:301814:302442:302543,	301644	301814	301744	301744	Nonsense_Mutation	C	T	p.W534X
SKCM	TCGA-FS-A1ZZ-06	ETNK1	ENST00000266517.4,ENST00000544191.1	chr12	22824205:22824289:22826433:22826594:22837416:22837485,	22826434	22826594	22826574	22826574	Nonsense_Mutation	C	T	p.Q398X
SKCM	TCGA-FS-A1ZZ-06	MMP19	ENST00000547685.1,ENST00000548629.1,ENST00000394182.1,ENST00000322569.4,ENST00000552872.1	chr12	56230899:56231158:56231338:56231466:56231626:56231737,	56231339	56231466	56231370	56231370	Nonsense_Mutation	C	T	p.W386X
SKCM	TCGA-FS-A1ZZ-06	MMP19	ENST00000547685.1,ENST00000552872.1	chr12	56231626:56231791:56232283:56232518:56233279:56233525,	56232284	56232518	56232287	56232287	Nonsense_Mutation	C	T	p.W251X
SKCM	TCGA-FS-A1ZZ-06	MAP2K5	ENST00000557869.1	chr15	67995695:67995746:68040906:68040939:68061939:68062001,	68040907	68040939	68040913	68040913	Nonsense_Mutation	C	T	p.Q370X
SKCM	TCGA-FS-A1ZZ-06	ERBB2	ENST00000406381.2,ENST00000584908.1,ENST00000584450.1,ENST00000578373.1,ENST00000541774.1,ENST00000578199.1,ENST00000540042.1,ENST00000269571.5,ENST00000584601.1,ENST00000583038.1,ENST00000540147.1	chr17	37864573:37864787:37865570:37865705:37866065:37866086,	37865571	37865705	37865597	37865597	Nonsense_Mutation	C	T	p.Q126X
SKCM	TCGA-FS-A1ZZ-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106510	168106510	Nonsense_Mutation	C	T	p.Q2648X
SKCM	TCGA-FS-A1ZZ-06	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143033	47143033	Nonsense_Mutation	C	A	p.G1644X
SKCM	TCGA-FS-A1ZZ-06	MAL2	ENST00000522112.2	chr8	120221388:120221440:120233826:120233997:120252404:120252560,120220792:120220844:120233826:120233997:120252404:120252560,120181921:120182023:120233826:120233997:120252404:120252560,	120233827	120233997	120233971	120233971	Nonsense_Mutation	C	T	p.Q93X
SKCM	TCGA-FS-A1ZZ-06	EFR3A	ENST00000254624.5,ENST00000519656.1,ENST00000334503.4	chr8	132999821:132999949:133008652:133008744:133013015:133013203,132999821:132999949:133008652:133008744:133014005:133014054,	133008653	133008744	133008661	133008661	Nonsense_Mutation	C	T	p.R692X
SKCM	TCGA-EE-A29H-06	BIN2	ENST00000267012.4,ENST00000544402.1,ENST00000604560.1	chr12	51693390:51693498:51695803:51695899:51696469:51696564,	51695804	51695899	51695882	51695882	Nonsense_Mutation	C	T	p.W110X
SKCM	TCGA-EE-A29H-06	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748891	43748891	Nonsense_Mutation	G	A	p.R634X
SKCM	TCGA-EE-A29H-06	CD276	ENST00000318443.5,ENST00000560928.1,ENST00000561213.1,ENST00000537340.2	chr15	73994822:73994934:73995112:73995427:73995999:73996338,	73995113	73995427	73995207	73995207	Nonsense_Mutation	C	A	p.Y171X
SKCM	TCGA-EE-A29H-06	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057635	145057635	Nonsense_Mutation	G	A	p.Q708X
SKCM	TCGA-EE-A29H-06	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057635	145057635	Nonsense_Mutation	G	A	p.Q708X
SKCM	TCGA-EB-A299-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000602997.1,ENST00000605781.1,ENST00000380554.3	chr10	5138601:5138769:5139625:5139742:5140993:5141071,	5139626	5139742	5139644	5139644	Nonsense_Mutation	C	T	p.R91X
SKCM	TCGA-EB-A299-01	DNAJC12	ENST00000483798.2,ENST00000225171.2	chr10	69556839:69556968:69565340:69565545:69571281:69571421,	69565341	69565545	69565428	69565428	Nonsense_Mutation	C	A	p.E139X
SKCM	TCGA-EB-A299-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169492434:169492590:169493038:169493142:169494074:169494146,	169493039	169493142	169493087	169493087	Nonsense_Mutation	C	T	p.W1948X
SKCM	TCGA-EB-A299-01	TMEM177	ENST00000409951.1	chr2	120436778:120436852:120438407:120438699:120443233:120443330,	120438408	120438699	120438625	120438625	Nonsense_Mutation	C	T	p.Q66X
SKCM	TCGA-EE-A2A0-06	SERPINA10	ENST00000261994.4	chr14	94754622:94754896:94756212:94756980:94759525:94759608,	94756213	94756980	94756564	94756564	Nonsense_Mutation	G	A	p.Q123X
SKCM	TCGA-EE-A2A0-06	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828152	121828152	Nonsense_Mutation	G	A	p.W166X
SKCM	TCGA-EE-A2A0-06	LMBR1	ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156476253:156476857:156480723:156480885:156516805:156516872,	156480724	156480885	156480769	156480769	Nonsense_Mutation	G	A	p.R448X
SKCM	TCGA-D3-A1QA-06	ARL6IP1	ENST00000546206.2,ENST00000304414.7,ENST00000562234.2	chr16	18805920:18806005:18806785:18806903:18809246:18809366,	18806786	18806903	18806848	18806848	Nonsense_Mutation	G	A	p.R116X
SKCM	TCGA-D3-A1QA-06	MOG	ENST00000376889.3,ENST00000376894.4,ENST00000376902.3,ENST00000416766.2,ENST00000376888.2,ENST00000533330.2,ENST00000485211.1,ENST00000376917.3,ENST00000376898.3	chr6	29635680:29635701:29638057:29638174:29638477:29638498,	29638058	29638174	29638086	29638086	Nonsense_Mutation	G	A	p.W207X
SKCM	TCGA-D3-A1QA-06	UBR2	ENST00000372883.3,ENST00000372899.1,ENST00000372901.1	chr6	42652531:42652609:42655953:42656124:42657306:42657408,	42655954	42656124	42656009	42656009	Nonsense_Mutation	G	T	p.G1637X
SKCM	TCGA-EE-A29B-06	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937001	48937001	Nonsense_Mutation	C	T	p.Q257X
SKCM	TCGA-EE-A29B-06	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39536376:39536500:39543618:39543734:39545138:39545297,	39543619	39543734	39543713	39543713	Nonsense_Mutation	G	A	p.R337X
SKCM	TCGA-EE-A29B-06	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000473086.2,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42490267:42490381:42492087:42492291:42492469:42492529,	42492088	42492291	42492161	42492161	Nonsense_Mutation	C	T	p.W108X
SKCM	TCGA-EE-A29B-06	NPHS2	ENST00000367616.4	chr1	179521737:179521816:179523610:179523666:179528813:179528896,	179523611	179523666	179523637	179523637	Nonsense_Mutation	C	T	p.W256X
SKCM	TCGA-EE-A29B-06	AFP	ENST00000226359.2,ENST00000395792.2,ENST00000508838.1	chr4	74316331:74316470:74318117:74318341:74319481:74319614,	74318118	74318341	74318310	74318310	Nonsense_Mutation	C	T	p.Q541X
SKCM	TCGA-D3-A1Q5-06	LCTL	ENST00000565875.1,ENST00000563438.1	chr15	66856248:66856336:66857013:66857177:66858194:66858231,	66857014	66857177	66857168	66857168	Nonsense_Mutation	C	T	p.W43X
SKCM	TCGA-D3-A1Q5-06	CYP4B1	ENST00000371923.4,ENST00000526297.1,ENST00000271153.4,ENST00000464439.2	chr1	47276479:47276621:47276811:47276856:47278167:47278295,	47276812	47276856	47276851	47276851	Nonsense_Mutation	G	A	p.W121X
SKCM	TCGA-D3-A1Q5-06	RAB25	ENST00000473336.1,ENST00000487325.1	chr1	156035701:156035897:156038060:156038254:156039461:156039542,156031173:156031234:156038060:156038254:156039461:156039542,	156038061	156038254	156038242	156038242	Nonsense_Mutation	C	T	p.R141X
SKCM	TCGA-FS-A1ZB-06	GRIA4	ENST00000428631.2,ENST00000525187.1,ENST00000393127.2,ENST00000530497.1,ENST00000393125.2,ENST00000525032.1,ENST00000282499.5	chr11	105483002:105483161:105623706:105623946:105732749:105732934,	105623707	105623946	105623911	105623911	Nonsense_Mutation	G	A	p.W151X
SKCM	TCGA-FS-A1ZB-06	TARBP1	ENST00000481183.1,ENST00000040877.1	chr1	234536926:234537008:234541648:234541845:234546190:234546277,	234541649	234541845	234541779	234541779	Nonsense_Mutation	G	A	p.R1287X
SKCM	TCGA-D3-A1QB-06	GOT2	ENST00000564400.1,ENST00000245206.5,ENST00000496461.1	chr16	58752473:58752592:58753099:58753159:58756053:58756182,	58753100	58753159	58753135	58753135	Nonsense_Mutation	C	A	p.G134X
SKCM	TCGA-D3-A1QB-06	NVL	ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000361463.3,ENST00000469075.1,ENST00000281701.6	chr1	224475476:224475695:224477185:224477435:224481968:224482043,	224477186	224477435	224477257	224477257	Nonsense_Mutation	C	A	p.E502X
SKCM	TCGA-D3-A1QB-06	ERBB4	ENST00000484594.1,ENST00000342788.4,ENST00000436443.1	chr2	212495186:212495319:212522478:212522553:212530047:212530079,	212522479	212522553	212522512	212522512	Nonsense_Mutation	C	T	p.W638X
SKCM	TCGA-EE-A29A-06	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962686	21962686	Nonsense_Mutation	C	T	p.Q487X
SKCM	TCGA-EE-A29A-06	MLLT10	ENST00000438473.1	chr10	21959377:21959633:21962569:21962848:21970260:21970305,	21962570	21962848	21962686	21962686	Nonsense_Mutation	C	T	p.Q487X
SKCM	TCGA-EE-A29A-06	HYDIN	ENST00000393567.2,ENST00000378856.4	chr16	70894591:70894804:70895950:70896158:70896987:70897073,	70895951	70896158	70896141	70896141	Nonsense_Mutation	G	A	p.Q3863X
SKCM	TCGA-D3-A2J7-06	GALNT14	ENST00000324589.5,ENST00000349752.5,ENST00000475320.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31133662:31133925:31135088:31135208:31152260:31152353,31133662:31133925:31135088:31135208:31146984:31147129,	31135089	31135208	31135094	31135094	Nonsense_Mutation	G	A	p.R499X
SKCM	TCGA-D3-A2J7-06	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684173	77684173	Nonsense_Mutation	C	T	p.R1305X
SKCM	TCGA-ER-A19D-06	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24831852	24831852	Nonsense_Mutation	G	A	p.W1218X
SKCM	TCGA-ER-A19D-06	OXR1	ENST00000445937.1,ENST00000438229.2,ENST00000312046.6,ENST00000517455.1,ENST00000442977.2,ENST00000531443.1,ENST00000452423.2,ENST00000517566.2,ENST00000497705.1	chr8	107696473:107696587:107704955:107705105:107715133:107715315,	107704956	107705105	107705019	107705019	Nonsense_Mutation	C	T	p.R190X
SKCM	TCGA-EE-A29M-06	A1CF	ENST00000373997.3,ENST00000282641.2,ENST00000395495.1	chr10	52610424:52610567:52619601:52619745:52645340:52645387,52603747:52603882:52619601:52619745:52623792:52623840,	52619602	52619745	52619604	52619604	Nonsense_Mutation	G	A	p.Q33X
SKCM	TCGA-EE-A29M-06	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58001367	58001367	Nonsense_Mutation	C	T	p.Q241X
SKCM	TCGA-EE-A29M-06	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58001367	58001367	Nonsense_Mutation	C	T	p.Q241X
SKCM	TCGA-EE-A29M-06	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110193	120110193	Nonsense_Mutation	C	T	p.R83X
SKCM	TCGA-EE-A29M-06	HAUS4	ENST00000342454.8,ENST00000555986.1,ENST00000490506.1,ENST00000541587.1,ENST00000206474.7,ENST00000555367.1,ENST00000555040.1	chr14	23416809:23416940:23417076:23417222:23419522:23419619,	23417077	23417222	23417130	23417130	Nonsense_Mutation	G	A	p.Q219X
SKCM	TCGA-EE-A29M-06	GALC	ENST00000474294.2,ENST00000554916.1,ENST00000544807.2,ENST00000261304.2,ENST00000393569.2,ENST00000393568.4	chr14	88442701:88442832:88448548:88448587:88450737:88450877,	88448549	88448587	88448555	88448555	Nonsense_Mutation	A	T	p.Y182X
SKCM	TCGA-EE-A29M-06	NFIC	ENST00000590282.1,ENST00000341919.3,ENST00000443272.2	chr19	3359680:3359683:3381709:3382241:3425103:3425145,3366583:3366664:3381709:3382241:3425103:3425145,	3381710	3382241	3381895	3381895	Nonsense_Mutation	G	A	p.W72X
SKCM	TCGA-EE-A29M-06	SYTL1	ENST00000483926.1,ENST00000543823.1,ENST00000490170.1,ENST00000318074.5	chr1	27677946:27678046:27679773:27679979:27680203:27680421,	27679774	27679979	27679920	27679920	Nonsense_Mutation	G	A	p.W485X
SKCM	TCGA-EE-A29M-06	CLSPN	ENST00000520551.1,ENST00000373220.3,ENST00000318121.3,ENST00000251195.5	chr1	36228004:36228082:36228760:36228922:36229866:36230315,	36228761	36228922	36228884	36228884	Nonsense_Mutation	A	T	p.C207X
SKCM	TCGA-EE-A29M-06	CHI3L1	ENST00000255409.3	chr1	203151858:203151980:203152768:203152919:203153703:203153760,	203152769	203152919	203152894	203152894	Nonsense_Mutation	G	A	p.Q114X
SKCM	TCGA-EE-A29M-06	TP53I3	ENST00000238721.4,ENST00000335934.4,ENST00000407482.1,ENST00000313482.4,ENST00000413037.1	chr2	24303688:24303901:24305754:24306022:24307058:24307181,	24305755	24306022	24305773	24305773	Nonsense_Mutation	G	A	p.Q130X
SKCM	TCGA-EE-A29M-06	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545682	196545682	Nonsense_Mutation	C	T	p.R306X
SKCM	TCGA-EE-A29M-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749422	196749422	Nonsense_Mutation	G	A	p.R1884X
SKCM	TCGA-EE-A29M-06	FAM3D	ENST00000483787.1	chr3	58635041:58635065:58639400:58639508:58641277:58641328,58635041:58635062:58639400:58639508:58641277:58641328,	58639401	58639508	58639463	58639463	Nonsense_Mutation	C	T	p.W20X
SKCM	TCGA-EE-A29M-06	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297777	139297777	Nonsense_Mutation	C	T	p.W40X
SKCM	TCGA-EE-A29M-06	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660215	77660215	Nonsense_Mutation	G	T	p.E297X
SKCM	TCGA-EE-A29M-06	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121758562:121759434:121767663:121767777,121739487:121739560:121758562:121759434:121761046:121761226,	121758563	121759434	121758579	121758579	Nonsense_Mutation	G	A	p.W49X
SKCM	TCGA-EE-A29M-06	ADCYAP1R1	ENST00000409363.1	chr7	31104446:31104552:31117605:31117713:31123755:31123865,	31117606	31117713	31117622	31117622	Nonsense_Mutation	G	A	p.W58X
SKCM	TCGA-EE-A29M-06	ARMC1	ENST00000276569.3	chr8	66517497:66517572:66517656:66517773:66525478:66525668,	66517657	66517773	66517710	66517710	Nonsense_Mutation	G	A	p.Q177X
SKCM	TCGA-EE-A29M-06	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35310463:35310778:35313895:35313986:35366943:35366990,	35313896	35313986	35313969	35313969	Nonsense_Mutation	C	T	p.R384X
SKCM	TCGA-EE-A29M-06	UPF3B	ENST00000276201.2	chrX	118972329:118972490:118974608:118974647:118975038:118975219,	118974609	118974647	118974617	118974617	Nonsense_Mutation	G	A	p.Q280X
SKCM	TCGA-EE-A29M-06	UPF3B	ENST00000478840.1	chrX	118972329:118972490:118974556:118974647:118975038:118975219,	118974557	118974647	118974617	118974617	Nonsense_Mutation	G	A	p.Q280X
SKCM	TCGA-D3-A2JH-06	PABPC1L	ENST00000217073.2,ENST00000255136.3	chr20	43559161:43559367:43560982:43561073:43561712:43561826,	43560983	43561073	43561048	43561048	Nonsense_Mutation	G	A	p.W435X
SKCM	TCGA-D3-A2JH-06	TMPRSS7	ENST00000419127.1,ENST00000435737.1,ENST00000452346.2	chr3	111794167:111794339:111795722:111795991:111797588:111797725,	111795723	111795991	111795743	111795743	Nonsense_Mutation	G	A	p.W533X
SKCM	TCGA-QB-A6FS-06	PARD3	ENST00000374789.3,ENST00000545693.1,ENST00000545260.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34420390:34420511:34558584:34558827:34606034:34606260,34420390:34420511:34558584:34558827:34573062:34573173,	34558585	34558827	34558811	34558811	Nonsense_Mutation	G	A	p.R1031X
SKCM	TCGA-QB-A6FS-06	PSMC6	ENST00000445930.2,ENST00000606149.1	chr14	53184798:53184860:53184946:53185070:53190682:53190754,53184798:53184860:53184946:53185070:53185694:53185756,	53184947	53185070	53185031	53185031	Nonsense_Mutation	C	T	p.Q240X
SKCM	TCGA-QB-A6FS-06	EFCAB2	ENST00000473686.1,ENST00000391837.3,ENST00000425550.1,ENST00000487845.1,ENST00000551317.1,ENST00000366521.3,ENST00000495271.1,ENST00000366522.2,ENST00000447569.2,ENST00000497591.1,ENST00000549220.1,ENST00000366523.1	chr1	245245384:245245464:245246743:245246786:245246923:245246990,	245246744	245246786	245246775	245246775	Nonsense_Mutation	C	T	p.R99X
SKCM	TCGA-QB-A6FS-06	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25972564:25973282:25976402:25976508:25978886:25978983,	25976403	25976508	25976476	25976476	Nonsense_Mutation	G	A	p.R357X
SKCM	TCGA-QB-A6FS-06	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040381	103040381	Nonsense_Mutation	C	T	p.R61X
SKCM	TCGA-QB-A6FS-06	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789X
SKCM	TCGA-QB-A6FS-06	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516761	195516761	Nonsense_Mutation	G	A	p.Q564X
SKCM	TCGA-QB-A6FS-06	EPHB6	ENST00000411471.2,ENST00000422643.1,ENST00000425995.1,ENST00000442129.1,ENST00000392957.2	chr7	142563229:142563385:142563714:142564071:142564235:142564360,	142563715	142564071	142563804	142563804	Nonsense_Mutation	C	T	p.R398X
SKCM	TCGA-QB-A6FS-06	ASPH	ENST00000379454.4,ENST00000445642.3,ENST00000524173.1,ENST00000518068.1,ENST00000522835.1,ENST00000518306.1,ENST00000522919.1,ENST00000356457.5,ENST00000523927.1,ENST00000517847.2,ENST00000541428.1	chr8	62550527:62550562:62550880:62550922:62555446:62555479,	62550881	62550922	62550915	62550915	Nonsense_Mutation	A	T	p.Y209X
SKCM	TCGA-QB-A6FS-06	ASPH	ENST00000523897.1,ENST00000519234.1,ENST00000517903.1	chr8	62550527:62550562:62550880:62550919:62555446:62555479,	62550881	62550919	62550915	62550915	Nonsense_Mutation	A	T	p.Y209X
SKCM	TCGA-D3-A3C3-06	RAD51C	ENST00000583539.1,ENST00000337432.4,ENST00000413590.1,ENST00000584617.1,ENST00000482007.1	chr17	56780556:56780690:56787219:56787351:56798106:56798173,	56787220	56787351	56787223	56787223	Nonsense_Mutation	C	T	p.R237X
SKCM	TCGA-D3-A3C3-06	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27100919	27100919	Nonsense_Mutation	C	T	p.Q1401X
SKCM	TCGA-EE-A29S-06	P4HA3	ENST00000427714.2,ENST00000524388.1,ENST00000331597.4	chr11	73984589:73984652:73988029:73988189:73990432:73990491,	73988030	73988189	73988184	73988184	Nonsense_Mutation	C	T	p.W394X
SKCM	TCGA-EE-A29S-06	VWA8	ENST00000379310.3	chr13	42245081:42245283:42249350:42249432:42259182:42259378,	42249351	42249432	42249370	42249370	Nonsense_Mutation	G	A	p.R1464X
SKCM	TCGA-EE-A29S-06	CD19	ENST00000567541.1,ENST00000538922.1,ENST00000565089.1,ENST00000324662.3	chr16	28944752:28944830:28946764:28946875:28947473:28947522,	28946765	28946875	28946799	28946799	Nonsense_Mutation	G	A	p.W290X
SKCM	TCGA-EE-A29S-06	CYP4F12	ENST00000550308.1,ENST00000550627.1,ENST00000546608.1,ENST00000518629.3,ENST00000324632.10,ENST00000517734.1	chr19	15795877:15796007:15806745:15806879:15806970:15807035,	15806746	15806879	15806746	15806746	Nonsense_Mutation	G	A	p.W372X
SKCM	TCGA-EE-A29S-06	NME7	ENST00000367811.3,ENST00000472647.1,ENST00000483228.1	chr1	169138758:169138792:169199955:169200057:169204368:169204437,	169199956	169200057	169199982	169199982	Nonsense_Mutation	G	A	p.R286X
SKCM	TCGA-EE-A29S-06	ENPEP	ENST00000265162.5	chr4	111470871:111471042:111474470:111474611:111480802:111480881,	111474471	111474611	111474532	111474532	Nonsense_Mutation	C	T	p.R855X
SKCM	TCGA-EE-A29S-06	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751222	13751222	Nonsense_Mutation	G	A	p.Q3726X
SKCM	TCGA-EE-A29S-06	AGXT2	ENST00000231420.6,ENST00000510428.1	chr5	35037046:35037170:35039428:35039613:35047909:35047995,35037046:35037170:35039428:35039613:35040679:35040765,	35039429	35039613	35039544	35039544	Nonsense_Mutation	G	A	p.Q83X
SKCM	TCGA-EE-A29S-06	ADTRP	ENST00000505099.1,ENST00000414691.3,ENST00000512139.1,ENST00000229583.5	chr6	11717541:11717647:11723581:11723733:11735800:11735889,11714610:11714745:11723581:11723733:11728559:11728790,11714610:11714745:11723581:11723733:11735800:11735889,	11723582	11723733	11723584	11723584	Nonsense_Mutation	C	T	p.W237X
SKCM	TCGA-EE-A29S-06	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42237006	42237006	Nonsense_Mutation	C	T	p.W108X
SKCM	TCGA-EE-A29S-06	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199780	20199780	Nonsense_Mutation	C	T	p.W68X
SKCM	TCGA-EE-A29S-06	ADAM28	ENST00000437154.2,ENST00000265769.4	chr8	24170900:24171093:24177748:24177820:24178730:24178802,	24177749	24177820	24177770	24177770	Nonsense_Mutation	C	T	p.Q200X
SKCM	TCGA-DA-A1I1-06	ITGA1	ENST00000504669.1,ENST00000282588.6	chr5	52214561:52214728:52216161:52216298:52218606:52218717,	52216162	52216298	52216260	52216260	Nonsense_Mutation	C	T	p.R752X
SKCM	TCGA-DA-A1I1-06	LARP1	ENST00000336314.4	chr5	154183780:154183867:154185440:154185592:154188018:154188163,	154185441	154185592	154185511	154185511	Nonsense_Mutation	C	T	p.Q796X
SKCM	TCGA-DA-A1I1-06	TRIM31	ENST00000376734.3,ENST00000540829.1	chr6	30078224:30078455:30079424:30079520:30080165:30080252,	30079425	30079520	30079499	30079499	Nonsense_Mutation	G	A	p.Q147X
SKCM	TCGA-DA-A1I1-06	ALG13	ENST00000394780.3,ENST00000251943.4,ENST00000495283.1	chrX	110928198:110928331:110951254:110951621:110952192:110952257,	110951255	110951621	110951568	110951568	Nonsense_Mutation	C	T	p.R129X
SKCM	TCGA-EE-A2GU-06	NEK9	ENST00000554258.1	chr14	75587218:75587283:75587821:75587877:75590748:75590926,75587218:75587283:75587821:75587877:75593405:75593636,	75587822	75587877	75587839	75587839	Nonsense_Mutation	T	A	p.K146X
SKCM	TCGA-EE-A2GU-06	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645158	46645158	Nonsense_Mutation	G	A	p.R568X
SKCM	TCGA-EE-A2GU-06	LIFR	ENST00000506003.1,ENST00000263409.4,ENST00000453190.2	chr5	38489179:38489347:38490291:38490393:38493707:38493887,	38490292	38490393	38490385	38490385	Nonsense_Mutation	G	A	p.R692X
SKCM	TCGA-EE-A2GU-06	ADAMTS6	ENST00000381055.3,ENST00000464680.2,ENST00000470597.1,ENST00000381052.4	chr5	64521912:64522046:64537930:64538033:64556426:64556490,	64537931	64538033	64538006	64538006	Nonsense_Mutation	G	A	p.R620X
SKCM	TCGA-BF-A1PU-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46231280:46231490:46233111:46233279:46240638:46240720,	46233112	46233279	46233249	46233249	Nonsense_Mutation	C	T	p.Q490X
SKCM	TCGA-BF-A1PU-01	ARID2	ENST00000444670.1	chr12	46231280:46231490:46233168:46233279:46240638:46240720,	46233169	46233279	46233249	46233249	Nonsense_Mutation	C	T	p.Q490X
SKCM	TCGA-BF-A1PU-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469888	47469888	Nonsense_Mutation	G	A	p.R52X
SKCM	TCGA-ER-A19H-06	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462137	5462137	Nonsense_Mutation	G	A	p.Q627X
SKCM	TCGA-ER-A19H-06	CD1C	ENST00000368170.3	chr1	158262570:158262664:158263001:158263092:158263244:158263407,	158263002	158263092	158263023	158263023	Nonsense_Mutation	G	A	p.W304X
SKCM	TCGA-EB-A3Y7-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021428	42021428	Nonsense_Mutation	C	T	p.R1242X
SKCM	TCGA-EB-A3Y7-01	FAM81A	ENST00000288228.5	chr15	59752131:59752405:59784469:59784588:59799411:59799541,	59784470	59784588	59784572	59784572	Nonsense_Mutation	C	T	p.R133X
SKCM	TCGA-EB-A3Y7-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329624	33329624	Nonsense_Mutation	A	T	p.L1479X
SKCM	TCGA-EB-A3Y7-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086302	109086302	Nonsense_Mutation	C	T	p.Q173X
SKCM	TCGA-EB-A3Y7-01	ARHGEF4	ENST00000525839.1,ENST00000409303.1,ENST00000326016.5,ENST00000392953.3	chr2	131688530:131688830:131704081:131704208:131785517:131785657,	131704082	131704208	131704087	131704087	Nonsense_Mutation	G	A	p.W102X
SKCM	TCGA-EB-A3Y7-01	G6PC2	ENST00000429379.2	chr2	169757834:169758059:169758954:169759064:169761014:169761126,	169758955	169759064	169758955	169758955	Nonsense_Mutation	G	A	p.W73X
SKCM	TCGA-EB-A3Y7-01	OSGEPL1	ENST00000519810.1,ENST00000520350.1,ENST00000264151.5,ENST00000522700.1	chr2	190618641:190618790:190618866:190619071:190619898:190620286,	190618867	190619071	190619038	190619038	Nonsense_Mutation	C	A	p.E215X
SKCM	TCGA-EB-A3Y7-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86416204	86416204	Nonsense_Mutation	A	T	p.K366X
SKCM	TCGA-EB-A3Y7-01	SLC13A1	ENST00000427975.1,ENST00000194130.2	chr7	122774463:122774583:122787212:122787364:122808427:122808476,	122787213	122787364	122787340	122787340	Nonsense_Mutation	G	A	p.R229X
SKCM	TCGA-FS-A1ZK-06	CACUL1	ENST00000369151.3,ENST00000544392.1	chr10	120446109:120446153:120450776:120450915:120454652:120454742,	120450777	120450915	120450808	120450808	Nonsense_Mutation	G	A	p.Q332X
SKCM	TCGA-FS-A1ZK-06	SERPING1	ENST00000378323.4	chr11	57365743:57365794:57367336:57367850:57369507:57369642,	57367337	57367850	57367838	57367838	Nonsense_Mutation	C	T	p.Q180X
SKCM	TCGA-FS-A1ZK-06	SERPING1	ENST00000378324.2	chr11	57365743:57365794:57367351:57367850:57369507:57369642,57365162:57365195:57367351:57367850:57369507:57369642,	57367352	57367850	57367838	57367838	Nonsense_Mutation	C	T	p.Q180X
SKCM	TCGA-FS-A1ZK-06	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450849	85450849	Nonsense_Mutation	C	T	p.Q760X
SKCM	TCGA-FS-A1ZK-06	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640943	36640943	Nonsense_Mutation	G	A	p.Q426X
SKCM	TCGA-FS-A1ZK-06	CCDC157	ENST00000338306.3,ENST00000405659.1	chr22	30765420:30765592:30766314:30766939:30767638:30767716,	30766315	30766939	30766447	30766447	Nonsense_Mutation	C	T	p.Q185X
SKCM	TCGA-FS-A1ZK-06	ILDR1	ENST00000344209.5,ENST00000460554.1,ENST00000273691.3,ENST00000462014.1	chr3	121720154:121720301:121720591:121720711:121724090:121724240,	121720592	121720711	121720677	121720677	Nonsense_Mutation	C	T	p.W138X
SKCM	TCGA-FS-A1ZK-06	HTT	ENST00000355072.5	chr4	3088665:3088749:3101000:3101121:3105550:3105610,	3101001	3101121	3101017	3101017	Nonsense_Mutation	C	T	p.Q122X
SKCM	TCGA-FS-A1ZK-06	CD38	ENST00000502843.1	chr4	15818218:15818263:15835839:15835925:15839714:15839788,	15835840	15835925	15835868	15835868	Nonsense_Mutation	G	A	p.W176X
SKCM	TCGA-FS-A1ZK-06	RFC1	ENST00000381897.1,ENST00000349703.2	chr4	39304356:39304494:39304679:39304771:39306433:39306548,	39304680	39304771	39304682	39304682	Nonsense_Mutation	G	A	p.Q735X
SKCM	TCGA-FS-A1ZK-06	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7581101	7581101	Nonsense_Mutation	C	T	p.Q1560X
SKCM	TCGA-FS-A1ZK-06	INTS1	ENST00000389470.4,ENST00000404767.3	chr7	1520977:1521124:1522181:1522343:1523377:1523489,	1522182	1522343	1522326	1522326	Nonsense_Mutation	G	A	p.Q1187X
SKCM	TCGA-FS-A1ZK-06	PPP3CC	ENST00000523620.1,ENST00000289963.8,ENST00000522034.1,ENST00000240139.5,ENST00000397775.3,ENST00000521651.1,ENST00000518852.1	chr8	22368598:22368744:22370805:22370945:22380003:22380081,	22370806	22370945	22370923	22370923	Nonsense_Mutation	C	T	p.R250X
SKCM	TCGA-FS-A1ZK-06	FAM83A	ENST00000536633.1,ENST00000518448.1	chr8	124192398:124192469:124194265:124195576:124204042:124204210,	124194266	124195576	124195459	124195459	Nonsense_Mutation	G	A	p.W121X
SKCM	TCGA-ER-A19S-06	CDH13	ENST00000268613.10,ENST00000566620.1,ENST00000539548.2,ENST00000428848.3	chr16	83520081:83520260:83636058:83636199:83704394:83704486,	83636059	83636199	83636110	83636110	Nonsense_Mutation	G	T	p.G385X
SKCM	TCGA-FW-A3R5-06	MKX	ENST00000460919.2,ENST00000375790.5,ENST00000419761.1	chr10	28023384:28023720:28024149:28024303:28030273:28030433,	28024150	28024303	28024255	28024255	Nonsense_Mutation	G	A	p.R133X
SKCM	TCGA-FW-A3R5-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61835772	61835772	Nonsense_Mutation	G	A	p.R1623X
SKCM	TCGA-FW-A3R5-06	SORCS3	ENST00000369701.3	chr10	106865154:106865273:106899154:106899244:106907374:106907554,	106899155	106899244	106899194	106899194	Nonsense_Mutation	C	T	p.R418X
SKCM	TCGA-FW-A3R5-06	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000338354.3	chr10	124344786:124344825:124345575:124345899:124348459:124348783,	124345576	124345899	124345685	124345685	Nonsense_Mutation	G	A	p.W523X
SKCM	TCGA-FW-A3R5-06	RNF141	ENST00000528665.1	chr11	10552189:10552298:10555562:10555752:10562668:10562737,	10555563	10555752	10555624	10555624	Nonsense_Mutation	G	A	p.R28X
SKCM	TCGA-FW-A3R5-06	SERGEF	ENST00000525422.1,ENST00000527494.1,ENST00000528200.1,ENST00000265965.5,ENST00000524716.1,ENST00000532265.1,ENST00000530613.1,ENST00000532212.1,ENST00000529728.1,ENST00000532389.1	chr11	18022070:18022104:18025987:18026082:18028137:18028293,	18025988	18026082	18026017	18026017	Nonsense_Mutation	G	A	p.R140X
SKCM	TCGA-FW-A3R5-06	SLC5A12	ENST00000280467.6,ENST00000527405.1,ENST00000533617.1,ENST00000396005.3	chr11	26725077:26725218:26725339:26725494:26730858:26730926,	26725340	26725494	26725472	26725472	Nonsense_Mutation	C	T	p.W183X
SKCM	TCGA-FW-A3R5-06	C11orf74	ENST00000528092.1	chr11	36631630:36631789:36654833:36654988:36657600:36657667,36631630:36631789:36654833:36654988:36669565:36669701,	36654834	36654988	36654959	36654959	Nonsense_Mutation	C	T	p.R88X
SKCM	TCGA-FW-A3R5-06	SLC22A10	ENST00000532724.1,ENST00000526800.1	chr11	63057779:63058039:63059011:63059115:63064774:63064929,63057875:63058039:63059011:63059115:63066391:63066515,	63059012	63059115	63059013	63059013	Nonsense_Mutation	G	A	p.W135X
SKCM	TCGA-FW-A3R5-06	INTS4	ENST00000534064.1,ENST00000529807.1	chr11	77692504:77692622:77702153:77702345:77705635:77705699,	77702154	77702345	77702315	77702315	Nonsense_Mutation	G	A	p.R29X
SKCM	TCGA-FW-A3R5-06	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	120989014:120989427:120996010:120996581:120998460:120999053,	120996011	120996581	120996131	120996131	Nonsense_Mutation	C	T	p.Q442X
SKCM	TCGA-FW-A3R5-06	SORL1	ENST00000532451.1,ENST00000260197.7	chr11	121348826:121348952:121358740:121358902:121360751:121360819,	121358741	121358902	121358776	121358776	Nonsense_Mutation	G	A	p.W188X
SKCM	TCGA-FW-A3R5-06	SLC6A13	ENST00000343164.4,ENST00000445055.2	chr12	335555:335680:336730:336834:344255:344390,	336731	336834	336757	336757	Nonsense_Mutation	G	C	p.Y211X
SKCM	TCGA-FW-A3R5-06	CACNA1C	ENST00000399638.1,ENST00000480911.1,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2602367:2602552:2614007:2614111:2621977:2622150,	2614008	2614111	2614040	2614040	Nonsense_Mutation	G	A	p.W382X
SKCM	TCGA-FW-A3R5-06	KLRG1	ENST00000544226.1	chr12	9102720:9102832:9144801:9144906:9161570:9161671,	9144802	9144906	9144893	9144893	Nonsense_Mutation	G	A	p.W58X
SKCM	TCGA-FW-A3R5-06	MYO1A	ENST00000554234.1,ENST00000544473.1,ENST00000442789.2,ENST00000300119.3	chr12	57437023:57437142:57437639:57437787:57437889:57437993,	57437640	57437787	57437748	57437748	Nonsense_Mutation	G	A	p.R262X
SKCM	TCGA-FW-A3R5-06	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96063853:96063922:96076482:96076598:96077273:96077487,	96076483	96076598	96076520	96076520	Nonsense_Mutation	C	T	p.W491X
SKCM	TCGA-FW-A3R5-06	UTP20	ENST00000261637.4	chr12	101738372:101738528:101739331:101739472:101740228:101740366,	101739332	101739472	101739389	101739389	Nonsense_Mutation	C	T	p.Q1555X
SKCM	TCGA-FW-A3R5-06	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109683983:109684253:109685410:109685508:109687788:109687909,	109685411	109685508	109685438	109685438	Nonsense_Mutation	C	T	p.Q1867X
SKCM	TCGA-FW-A3R5-06	GPN3	ENST00000550228.1	chr12	110893642:110893735:110895314:110895439:110897499:110897667,110891616:110891676:110895314:110895439:110897499:110897667,	110895315	110895439	110895368	110895368	Nonsense_Mutation	G	A	p.R133X
SKCM	TCGA-FW-A3R5-06	ACAD10	ENST00000508303.1,ENST00000392636.2	chr12	112165765:112165947:112167609:112167760:112171726:112171851,112159474:112159543:112167609:112167760:112171726:112171851,	112167610	112167760	112167654	112167654	Nonsense_Mutation	C	T	p.R430X
SKCM	TCGA-FW-A3R5-06	OAS3	ENST00000228928.7	chr12	113402165:113402213:113403548:113403834:113405222:113405398,	113403549	113403834	113403696	113403696	Nonsense_Mutation	C	T	p.Q851X
SKCM	TCGA-FW-A3R5-06	CCDC60	ENST00000327554.2	chr12	119961497:119961623:119966419:119966551:119968678:119968868,	119966420	119966551	119966478	119966478	Nonsense_Mutation	C	T	p.Q430X
SKCM	TCGA-FW-A3R5-06	NEK5	ENST00000355568.4	chr13	52657395:52657488:52660412:52660499:52661473:52661590,	52660413	52660499	52660491	52660491	Nonsense_Mutation	C	T	p.W467X
SKCM	TCGA-FW-A3R5-06	NEK5	ENST00000355568.4,ENST00000465811.3	chr13	52678633:52678688:52682453:52682540:52684475:52684546,	52682454	52682540	52682524	52682524	Nonsense_Mutation	G	A	p.R162X
SKCM	TCGA-FW-A3R5-06	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266120	75266120	Nonsense_Mutation	C	T	p.R1374X
SKCM	TCGA-FW-A3R5-06	WDR72	ENST00000557913.1,ENST00000560036.1,ENST00000396328.1,ENST00000360509.5,ENST00000559418.1	chr15	53994330:53994551:53997184:53997430:53998123:53998265,	53997185	53997430	53997401	53997401	Nonsense_Mutation	G	A	p.Q378X
SKCM	TCGA-FW-A3R5-06	UBE2Q2	ENST00000338677.4,ENST00000426727.2	chr15	76165768:76165909:76175706:76175765:76189335:76189402,76171438:76171529:76175706:76175765:76191767:76191835,	76175707	76175765	76175737	76175737	Nonsense_Mutation	C	T	p.R270X
SKCM	TCGA-FW-A3R5-06	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84539663:84539711:84553852:84553964:84558860:84558999,	84553853	84553964	84553916	84553916	Nonsense_Mutation	C	T	p.Q342X
SKCM	TCGA-FW-A3R5-06	ZSCAN10	ENST00000575108.1	chr16	3141764:3141829:3142049:3142317:3142542:3142861,3141764:3141829:3142049:3142317:3149190:3149229,	3142050	3142317	3142167	3142167	Nonsense_Mutation	G	A	p.R128X
SKCM	TCGA-FW-A3R5-06	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000538472.1,ENST00000420015.2	chr16	14704521:14704666:14711446:14711507:14720962:14720993,	14711447	14711507	14711453	14711453	Nonsense_Mutation	G	A	p.R82X
SKCM	TCGA-FW-A3R5-06	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000396104.2	chr16	20491894:20492022:20492143:20492243:20494379:20494499,	20492144	20492243	20492235	20492235	Nonsense_Mutation	C	T	p.R501X
SKCM	TCGA-FW-A3R5-06	SLC12A3	ENST00000563236.1,ENST00000262502.5,ENST00000566786.1,ENST00000438926.2	chr16	56916377:56916409:56917960:56918116:56919176:56919276,	56917961	56918116	56917978	56917978	Nonsense_Mutation	C	T	p.Q563X
SKCM	TCGA-FW-A3R5-06	TSNAXIP1	ENST00000565148.1,ENST00000568990.1,ENST00000388833.3,ENST00000561639.1	chr16	67848204:67848304:67854741:67854854:67855001:67855128,	67854742	67854854	67854817	67854817	Nonsense_Mutation	C	T	p.R21X
SKCM	TCGA-FW-A3R5-06	PMFBP1	ENST00000237353.10,ENST00000537465.1	chr16	72153749:72153988:72156812:72156887:72157444:72157548,	72156813	72156887	72156856	72156856	Nonsense_Mutation	G	A	p.R764X
SKCM	TCGA-FW-A3R5-06	ATP2A3	ENST00000570845.1	chr17	3828689:3828735:3831533:3831621:3831956:3832074,3831274:3831332:3831533:3831621:3831956:3832074,	3831534	3831621	3831551	3831551	Nonsense_Mutation	C	T	p.W1017X
SKCM	TCGA-FW-A3R5-06	ATP2A3	ENST00000359983.3	chr17	3828689:3828735:3831520:3831621:3831956:3832074,3831274:3831332:3831520:3831621:3831956:3832074,	3831521	3831621	3831551	3831551	Nonsense_Mutation	C	T	p.W1017X
SKCM	TCGA-FW-A3R5-06	TAOK1	ENST00000261716.3	chr17	27849305:27849537:27857424:27857637:27861135:27861318,	27857425	27857637	27857437	27857437	Nonsense_Mutation	C	T	p.Q721X
SKCM	TCGA-FW-A3R5-06	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527590	29527590	Nonsense_Mutation	C	T	p.Q347X
SKCM	TCGA-FW-A3R5-06	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232942	71232942	Nonsense_Mutation	C	T	p.Q441X
SKCM	TCGA-FW-A3R5-06	TRAPPC8	ENST00000582513.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29489629:29489723:29493331:29493485:29496234:29496409,	29493332	29493485	29493334	29493334	Nonsense_Mutation	G	A	p.Q257X
SKCM	TCGA-FW-A3R5-06	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43796276	43796276	Nonsense_Mutation	C	T	p.R144X
SKCM	TCGA-FW-A3R5-06	CHAF1A	ENST00000301280.5	chr19	4431948:4432204:4433066:4433536:4442241:4442338,	4433067	4433536	4433534	4433534	Nonsense_Mutation	C	T	p.Q891X
SKCM	TCGA-FW-A3R5-06	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507007	18507007	Nonsense_Mutation	C	T	p.W256X
SKCM	TCGA-FW-A3R5-06	CD22	ENST00000419549.2	chr19	35820114:35820133:35823455:35823827:35827051:35827244,	35823456	35823827	35823538	35823538	Nonsense_Mutation	G	A	p.W41X
SKCM	TCGA-FW-A3R5-06	CD22	ENST00000600905.1	chr19	35820114:35820133:35823496:35823827:35826938:35826945,	35823497	35823827	35823538	35823538	Nonsense_Mutation	G	A	p.W41X
SKCM	TCGA-FW-A3R5-06	CD22	ENST00000596492.1	chr19	35820114:35820133:35822921:35823827:35826938:35826945,	35822922	35823827	35823538	35823538	Nonsense_Mutation	G	A	p.W41X
SKCM	TCGA-FW-A3R5-06	ZNF382	ENST00000292928.2	chr19	37098453:37098524:37100803:37100955:37101551:37101644,	37100804	37100955	37100898	37100898	Nonsense_Mutation	C	T	p.Q27X
SKCM	TCGA-FW-A3R5-06	ZNF382	ENST00000439428.1	chr19	37098453:37098524:37100828:37100955:37101551:37101644,	37100829	37100955	37100898	37100898	Nonsense_Mutation	C	T	p.Q27X
SKCM	TCGA-FW-A3R5-06	CEACAM21	ENST00000482870.2,ENST00000187608.9	chr19	42083551:42083911:42085705:42085981:42090702:42090796,	42085706	42085981	42085862	42085862	Nonsense_Mutation	G	A	p.W194X
SKCM	TCGA-FW-A3R5-06	CEACAM21	ENST00000457737.1	chr19	42083551:42083911:42085622:42085981:42090702:42090796,	42085623	42085981	42085862	42085862	Nonsense_Mutation	G	A	p.W194X
SKCM	TCGA-FW-A3R5-06	VRK3	ENST00000596814.1,ENST00000377011.2,ENST00000601341.1,ENST00000600137.1,ENST00000601912.1,ENST00000443401.2	chr19	50504046:50504111:50510825:50511083:50519280:50519420,	50510826	50511083	50511003	50511003	Nonsense_Mutation	G	A	p.Q74X
SKCM	TCGA-FW-A3R5-06	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450703	55450703	Nonsense_Mutation	C	T	p.W495X
SKCM	TCGA-FW-A3R5-06	NLRP11	ENST00000590409.1,ENST00000592953.1,ENST00000360133.3,ENST00000443188.1,ENST00000589093.1,ENST00000589824.2	chr19	56300172:56300343:56300594:56300765:56303666:56303837,	56300595	56300765	56300731	56300731	Nonsense_Mutation	G	A	p.Q850X
SKCM	TCGA-FW-A3R5-06	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118247	58118247	Nonsense_Mutation	C	T	p.R452X
SKCM	TCGA-FW-A3R5-06	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438240	58438240	Nonsense_Mutation	G	A	p.R437X
SKCM	TCGA-FW-A3R5-06	NADK	ENST00000378625.1,ENST00000342348.5,ENST00000497186.1,ENST00000344463.4,ENST00000400922.2,ENST00000477235.1,ENST00000341426.5,ENST00000341991.3,ENST00000469045.1,ENST00000480499.1	chr1	1686110:1686137:1686812:1686915:1687696:1687766,	1686813	1686915	1686834	1686834	Nonsense_Mutation	G	A	p.Q191X
SKCM	TCGA-FW-A3R5-06	BTBD8	ENST00000342818.3	chr1	92604906:92604987:92606671:92606768:92612736:92612825,	92606672	92606768	92606763	92606763	Nonsense_Mutation	C	T	p.Q309X
SKCM	TCGA-FW-A3R5-06	MTMR11	ENST00000482025.1,ENST00000492824.1,ENST00000369140.3,ENST00000406732.3,ENST00000493562.1,ENST00000439741.2	chr1	149904155:149904222:149905298:149905423:149905502:149905591,	149905299	149905423	149905338	149905338	Nonsense_Mutation	G	A	p.Q244X
SKCM	TCGA-FW-A3R5-06	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3	chr1	154956317:154956542:154960580:154961325:154962035:154962183,	154960581	154961325	154960590	154960590	Nonsense_Mutation	C	T	p.Q128X
SKCM	TCGA-FW-A3R5-06	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157667107	157667107	Nonsense_Mutation	G	A	p.Q223X
SKCM	TCGA-FW-A3R5-06	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157667107	157667107	Nonsense_Mutation	G	A	p.Q223X
SKCM	TCGA-FW-A3R5-06	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157667107	157667107	Nonsense_Mutation	G	A	p.Q223X
SKCM	TCGA-FW-A3R5-06	ATF6	ENST00000367942.3	chr1	161751701:161751789:161753779:161753886:161761197:161761327,	161753780	161753886	161753803	161753803	Nonsense_Mutation	C	T	p.Q91X
SKCM	TCGA-FW-A3R5-06	GPR161	ENST00000361697.2,ENST00000537209.1,ENST00000271357.5,ENST00000367835.1,ENST00000367838.1,ENST00000493800.1	chr1	168059801:168059906:168065745:168066470:168073714:168074132,	168065746	168066470	168066390	168066390	Nonsense_Mutation	C	T	p.W38X
SKCM	TCGA-FW-A3R5-06	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073649	197073649	Nonsense_Mutation	G	A	p.R1578X
SKCM	TCGA-FW-A3R5-06	TNNT2	ENST00000367320.2,ENST00000458432.2,ENST00000367322.1,ENST00000367315.2	chr1	201331078:201331150:201332423:201332534:201333425:201333503,	201332424	201332534	201332429	201332429	Nonsense_Mutation	G	A	p.Q199X
SKCM	TCGA-FW-A3R5-06	NFASC	ENST00000504476.1,ENST00000539706.1,ENST00000404076.1,ENST00000367171.4,ENST00000338515.6,ENST00000367170.4,ENST00000430393.1,ENST00000367172.4,ENST00000404907.1,ENST00000360049.4,ENST00000513543.1,ENST00000338586.6,ENST00000512826.1	chr1	204951011:204951148:204953154:204953270:204955037:204955242,	204953155	204953270	204953222	204953222	Nonsense_Mutation	G	A	p.W857X
SKCM	TCGA-FW-A3R5-06	ESRRG	ENST00000391890.3,ENST00000366937.1	chr1	216692493:216692763:216737560:216737743:216741329:216741440,	216737561	216737743	216737577	216737577	Nonsense_Mutation	C	T	p.W259X
SKCM	TCGA-FW-A3R5-06	ESRRG	ENST00000366938.2,ENST00000359162.2,ENST00000366940.2,ENST00000493748.1,ENST00000360012.3,ENST00000361395.2,ENST00000361525.3,ENST00000408911.3,ENST00000475275.1,ENST00000463665.1,ENST00000487276.1,ENST00000493603.1	chr1	216692493:216692763:216737560:216737722:216741329:216741440,	216737561	216737722	216737577	216737577	Nonsense_Mutation	C	T	p.W259X
SKCM	TCGA-FW-A3R5-06	SIPA1L2	ENST00000262861.4,ENST00000308942.4,ENST00000366630.1	chr1	232579347:232579431:232581274:232581532:232596632:232596907,	232581275	232581532	232581315	232581315	Nonsense_Mutation	G	A	p.R1105X
SKCM	TCGA-FW-A3R5-06	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205562	236205562	Nonsense_Mutation	C	T	p.W261X
SKCM	TCGA-FW-A3R5-06	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205563	236205563	Nonsense_Mutation	C	T	p.W261X
SKCM	TCGA-FW-A3R5-06	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000609119.1,ENST00000542537.1	chr1	237935311:237935400:237936819:237936948:237941965:237942070,	237936820	237936948	237936946	237936946	Nonsense_Mutation	C	T	p.Q3925X
SKCM	TCGA-FW-A3R5-06	MACROD2	ENST00000477147.1,ENST00000494602.1,ENST00000490428.1,ENST00000217246.4,ENST00000310348.4	chr20	13982933:13983050:14066266:14066374:14474124:14474154,	14066267	14066374	14066290	14066290	Nonsense_Mutation	C	T	p.Q63X
SKCM	TCGA-FW-A3R5-06	DOK5	ENST00000395939.1,ENST00000262593.5	chr20	53171471:53171579:53205021:53205136:53205225:53205345,	53205022	53205136	53205055	53205055	Nonsense_Mutation	C	T	p.R70X
SKCM	TCGA-FW-A3R5-06	COL9A3	ENST00000343916.3,ENST00000466192.1,ENST00000467819.1	chr20	61467829:61467884:61468434:61468617:61470035:61470113,	61468435	61468617	61468560	61468560	Nonsense_Mutation	C	T	p.R577X
SKCM	TCGA-FW-A3R5-06	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000473813.1,ENST00000424441.1	chr21	40587162:40587288:40590077:40590198:40590430:40590586,	40590078	40590198	40590106	40590106	Nonsense_Mutation	G	A	p.R1211X
SKCM	TCGA-FW-A3R5-06	PLB1	ENST00000444257.1,ENST00000327757.5,ENST00000404858.1,ENST00000422425.2	chr2	28827593:28827626:28828719:28828815:28829362:28829434,	28828720	28828815	28828806	28828806	Nonsense_Mutation	G	A	p.W1005X
SKCM	TCGA-FW-A3R5-06	GALNT14	ENST00000481023.1,ENST00000486564.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31165066:31165170:31167723:31167808:31168648:31168736,	31167724	31167808	31167799	31167799	Nonsense_Mutation	C	T	p.W251X
SKCM	TCGA-FW-A3R5-06	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000422669.1,ENST00000272273.5,ENST00000354476.3,ENST00000418533.2	chr2	33572433:33572577:33585663:33585846:33586495:33586582,	33585664	33585846	33585684	33585684	Nonsense_Mutation	C	T	p.Q1015X
SKCM	TCGA-FW-A3R5-06	LTBP1	ENST00000402934.1	chr2	33572433:33572577:33585669:33585846:33586495:33586582,	33585670	33585846	33585684	33585684	Nonsense_Mutation	C	T	p.Q1015X
SKCM	TCGA-FW-A3R5-06	EFEMP1	ENST00000424836.2	chr2	56102080:56102200:56108746:56108869:56144799:56145186,	56108747	56108869	56108789	56108789	Nonsense_Mutation	G	A	p.Q200X
SKCM	TCGA-FW-A3R5-06	TRABD2A	ENST00000496500.1,ENST00000409520.2,ENST00000335459.5,ENST00000479944.1	chr2	85049065:85049224:85051076:85051328:85059178:85059269,	85051077	85051328	85051079	85051079	Nonsense_Mutation	C	T	p.C395X
SKCM	TCGA-FW-A3R5-06	CNNM3	ENST00000305510.3,ENST00000377060.3	chr2	97493840:97493932:97494303:97494437:97494732:97494871,	97494304	97494437	97494389	97494389	Nonsense_Mutation	T	G	p.Y624X
SKCM	TCGA-FW-A3R5-06	IL36G	ENST00000259205.4	chr2	113736196:113736270:113736797:113736902:113737585:113737725,	113736798	113736902	113736846	113736846	Nonsense_Mutation	G	A	p.W35X
SKCM	TCGA-FW-A3R5-06	EPC2	ENST00000258484.6,ENST00000397424.2	chr2	149501190:149501336:149511495:149511702:149519350:149519378,	149511496	149511702	149511697	149511697	Nonsense_Mutation	C	T	p.R221X
SKCM	TCGA-FW-A3R5-06	PLA2R1	ENST00000283243.7,ENST00000392771.1	chr2	160843666:160843869:160862162:160862332:160869773:160869886,	160862163	160862332	160862250	160862250	Nonsense_Mutation	G	A	p.Q583X
SKCM	TCGA-FW-A3R5-06	CERS6	ENST00000305747.6	chr2	169574381:169574488:169622101:169622258:169626019:169631644,	169622102	169622258	169622102	169622102	Nonsense_Mutation	G	A	p.W282X
SKCM	TCGA-FW-A3R5-06	NOSTRIN	ENST00000397206.2,ENST00000444448.2,ENST00000447264.2,ENST00000458381.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169687981:169688044:169690736:169690835:169699501:169699627,	169690737	169690835	169690824	169690824	Nonsense_Mutation	G	T	p.E165X
SKCM	TCGA-FW-A3R5-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749452	196749452	Nonsense_Mutation	G	A	p.R1874X
SKCM	TCGA-FW-A3R5-06	SLC11A1	ENST00000469799.1,ENST00000481524.1	chr2	219247682:219247825:219249869:219249989:219251357:219251390,219249041:219249088:219249869:219249989:219251357:219251390,219247031:219247098:219249869:219249989:219251357:219251390,	219249870	219249989	219249889	219249889	Nonsense_Mutation	G	A	p.W98X
SKCM	TCGA-FW-A3R5-06	SLC11A1	ENST00000469449.1	chr2	219249041:219249088:219249869:219250208:219251357:219251390,	219249870	219250208	219249889	219249889	Nonsense_Mutation	G	A	p.W98X
SKCM	TCGA-FW-A3R5-06	SLC11A1	ENST00000469799.1,ENST00000481524.1	chr2	219247682:219247825:219249869:219249989:219251357:219251390,219249041:219249088:219249869:219249989:219251357:219251390,219247031:219247098:219249869:219249989:219251357:219251390,	219249870	219249989	219249890	219249890	Nonsense_Mutation	G	A	p.W98X
SKCM	TCGA-FW-A3R5-06	SLC11A1	ENST00000469449.1	chr2	219249041:219249088:219249869:219250208:219251357:219251390,	219249870	219250208	219249890	219249890	Nonsense_Mutation	G	A	p.W98X
SKCM	TCGA-FW-A3R5-06	USP40	ENST00000450966.1,ENST00000427112.2,ENST00000251722.6	chr2	234438076:234438158:234442124:234442425:234449307:234449412,	234442125	234442425	234442224	234442224	Nonsense_Mutation	G	A	p.Q469X
SKCM	TCGA-FW-A3R5-06	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277716	238277716	Nonsense_Mutation	G	A	p.R857X
SKCM	TCGA-FW-A3R5-06	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088351	10088351	Nonsense_Mutation	C	T	p.R408X
SKCM	TCGA-FW-A3R5-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897018	36897018	Nonsense_Mutation	G	A	p.Q1355X
SKCM	TCGA-FW-A3R5-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36898763	36898763	Nonsense_Mutation	C	T	p.W773X
SKCM	TCGA-FW-A3R5-06	UBA7	ENST00000333486.3,ENST00000460516.1	chr3	49848184:49848265:49848416:49848524:49848705:49848888,	49848417	49848524	49848490	49848490	Nonsense_Mutation	C	T	p.W386X
SKCM	TCGA-FW-A3R5-06	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000431670.2,ENST00000412622.1	chr3	111667778:111667922:111671418:111671559:111672776:111672876,	111671419	111671559	111671488	111671488	Nonsense_Mutation	C	T	p.R901X
SKCM	TCGA-FW-A3R5-06	SLC9C1	ENST00000486574.1,ENST00000305815.5,ENST00000487372.1,ENST00000471295.1	chr3	111996551:111996707:111997575:111997704:111999529:111999630,	111997576	111997704	111997701	111997701	Nonsense_Mutation	G	A	p.Q65X
SKCM	TCGA-FW-A3R5-06	TM4SF18	ENST00000470080.1,ENST00000296059.2	chr3	149039063:149039279:149040042:149040223:149042666:149042809,	149040043	149040223	149040164	149040164	Nonsense_Mutation	C	T	p.W157X
SKCM	TCGA-FW-A3R5-06	BCHE	ENST00000264381.3	chr3	165490871:165491294:165503932:165504099:165547304:165548829,	165503933	165504099	165503967	165503967	Nonsense_Mutation	C	T	p.W550X
SKCM	TCGA-FW-A3R5-06	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219X
SKCM	TCGA-FW-A3R5-06	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219X
SKCM	TCGA-FW-A3R5-06	MCCC1	ENST00000495767.1,ENST00000497959.1,ENST00000497830.1,ENST00000265594.4,ENST00000539926.1,ENST00000492597.1,ENST00000476176.1	chr3	182759354:182759538:182763200:182763328:182769946:182770028,	182763201	182763328	182763211	182763211	Nonsense_Mutation	C	T	p.W358X
SKCM	TCGA-FW-A3R5-06	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185226344:185226665:185229311:185229485:185232197:185232309,	185229312	185229485	185229469	185229469	Nonsense_Mutation	G	A	p.Q371X
SKCM	TCGA-FW-A3R5-06	TPRG1	ENST00000433971.1,ENST00000345063.3,ENST00000425670.1	chr3	188933088:188933172:188956521:188956698:189028174:189028328,	188956522	188956698	188956533	188956533	Nonsense_Mutation	G	A	p.W105X
SKCM	TCGA-FW-A3R5-06	POLN	ENST00000511098.1,ENST00000511885.2,ENST00000382865.1	chr4	2130905:2130983:2132959:2133017:2158514:2158580,	2132960	2133017	2132987	2132987	Nonsense_Mutation	G	A	p.Q588X
SKCM	TCGA-FW-A3R5-06	CD38	ENST00000510674.1	chr4	15818218:15818263:15826503:15826621:15835839:15835925,	15826504	15826621	15826515	15826515	Nonsense_Mutation	G	A	p.W125X
SKCM	TCGA-FW-A3R5-06	CD38	ENST00000226279.3	chr4	15818218:15818263:15826503:15826639:15835839:15835925,	15826504	15826639	15826515	15826515	Nonsense_Mutation	G	A	p.W125X
SKCM	TCGA-FW-A3R5-06	LIAS	ENST00000261434.3,ENST00000340169.2	chr4	39466904:39466962:39469137:39469266:39471638:39471784,	39469138	39469266	39469178	39469178	Nonsense_Mutation	C	T	p.R217X
SKCM	TCGA-FW-A3R5-06	NUP54	ENST00000264883.3,ENST00000514987.1,ENST00000342467.6	chr4	77053675:77053872:77055327:77055515:77065301:77065445,77053675:77053872:77055327:77055515:77057338:77057565,	77055328	77055515	77055431	77055431	Nonsense_Mutation	G	A	p.R203X
SKCM	TCGA-FW-A3R5-06	PPM1K	ENST00000295908.7,ENST00000315194.4,ENST00000506423.1,ENST00000514204.1	chr4	89198294:89198395:89199295:89199794:89205557:89205713,	89199296	89199794	89199393	89199393	Nonsense_Mutation	G	A	p.Q115X
SKCM	TCGA-FW-A3R5-06	TRMT10A	ENST00000394877.3,ENST00000273962.3,ENST00000394876.2	chr4	100469769:100470513:100472041:100472147:100474941:100475091,	100472042	100472147	100472066	100472066	Nonsense_Mutation	G	A	p.R243X
SKCM	TCGA-FW-A3R5-06	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352918	113352918	Nonsense_Mutation	C	T	p.Q739X
SKCM	TCGA-FW-A3R5-06	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120192591	120192591	Nonsense_Mutation	C	T	p.R526X
SKCM	TCGA-FW-A3R5-06	ELF2	ENST00000379550.1,ENST00000504314.1,ENST00000265495.4,ENST00000514577.1,ENST00000358635.3,ENST00000394235.2,ENST00000510408.1	chr4	139983090:139983211:139988837:139988924:139993019:139993157,	139988838	139988924	139988877	139988877	Nonsense_Mutation	G	A	p.R132X
SKCM	TCGA-FW-A3R5-06	TBC1D9	ENST00000442267.2	chr4	141580741:141580859:141583046:141583261:141590070:141590221,	141583047	141583261	141583073	141583073	Nonsense_Mutation	G	A	p.R593X
SKCM	TCGA-FW-A3R5-06	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7	chr4	169337832:169337948:169340452:169340548:169341411:169341531,	169340453	169340548	169340494	169340494	Nonsense_Mutation	G	A	p.Q857X
SKCM	TCGA-FW-A3R5-06	DDX60L	ENST00000504793.1	chr4	169337832:169337948:169340452:169340535:169341411:169341531,	169340453	169340535	169340494	169340494	Nonsense_Mutation	G	A	p.Q857X
SKCM	TCGA-FW-A3R5-06	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000509912.1,ENST00000512193.1,ENST00000439128.2	chr4	170483287:170483347:170498078:170498230:170501992:170502053,	170498079	170498230	170498183	170498183	Nonsense_Mutation	G	A	p.Q306X
SKCM	TCGA-FW-A3R5-06	PDLIM3	ENST00000284770.5,ENST00000284767.5	chr4	186427675:186427806:186429452:186429716:186435423:186435491,	186429453	186429716	186429496	186429496	Nonsense_Mutation	G	A	p.Q207X
SKCM	TCGA-FW-A3R5-06	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1	chr5	33463857:33463930:33466975:33467090:33467664:33467943,	33466976	33467090	33467054	33467054	Nonsense_Mutation	C	T	p.R663X
SKCM	TCGA-FW-A3R5-06	JMY	ENST00000396137.4	chr5	78602197:78602284:78608225:78608321:78610079:78610674,	78608226	78608321	78608307	78608307	Nonsense_Mutation	C	T	p.R684X
SKCM	TCGA-FW-A3R5-06	MEGF10	ENST00000508365.1,ENST00000418761.2,ENST00000274473.6,ENST00000503335.2	chr5	126676221:126676322:126705601:126705694:126732223:126732470,	126705602	126705694	126705672	126705672	Nonsense_Mutation	G	A	p.W130X
SKCM	TCGA-FW-A3R5-06	SEC24A	ENST00000398844.2	chr5	134039448:134039622:134041016:134041127:134044402:134044578,	134041017	134041127	134041097	134041097	Nonsense_Mutation	C	T	p.Q841X
SKCM	TCGA-FW-A3R5-06	FCHSD1	ENST00000435817.2	chr5	141028738:141028875:141028961:141029103:141029453:141029521,	141028962	141029103	141029033	141029033	Nonsense_Mutation	G	A	p.Q102X
SKCM	TCGA-FW-A3R5-06	FCHSD1	ENST00000522126.1,ENST00000522783.1,ENST00000519800.1	chr5	141028738:141028875:141028961:141029097:141029453:141029521,	141028962	141029097	141029033	141029033	Nonsense_Mutation	G	A	p.Q102X
SKCM	TCGA-FW-A3R5-06	HTR4	ENST00000360693.3	chr5	147862418:147862856:147863822:147863942:147889018:147889587,	147863823	147863942	147863901	147863901	Nonsense_Mutation	C	T	p.W373X
SKCM	TCGA-FW-A3R5-06	TIMD4	ENST00000274532.2,ENST00000407087.3	chr5	156376661:156376742:156378522:156378801:156381425:156381767,	156378523	156378801	156378652	156378652	Nonsense_Mutation	G	A	p.Q184X
SKCM	TCGA-FW-A3R5-06	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176304192:176304280:176304535:176304704:176304894:176305128,	176304536	176304704	176304662	176304662	Nonsense_Mutation	G	A	p.W531X
SKCM	TCGA-FW-A3R5-06	SLC35B3	ENST00000339306.5,ENST00000379660.4	chr6	8420953:8421061:8422702:8422857:8428169:8428291,	8422703	8422857	8422706	8422706	Nonsense_Mutation	G	A	p.Q191X
SKCM	TCGA-FW-A3R5-06	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15410454:15410596:15452236:15452406:15468772:15468949,	15452237	15452406	15452403	15452403	Nonsense_Mutation	C	T	p.R164X
SKCM	TCGA-FW-A3R5-06	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31322989	31322989	Nonsense_Mutation	G	A	p.Q303X
SKCM	TCGA-FW-A3R5-06	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236191	42236191	Nonsense_Mutation	G	A	p.Q380X
SKCM	TCGA-FW-A3R5-06	HACE1	ENST00000369127.4,ENST00000416605.2,ENST00000517424.1,ENST00000262903.4,ENST00000517995.1	chr6	105192386:105192485:105198215:105198347:105219067:105219264,	105198216	105198347	105198317	105198317	Nonsense_Mutation	G	A	p.R748X
SKCM	TCGA-FW-A3R5-06	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150761	128150761	Nonsense_Mutation	C	T	p.W190X
SKCM	TCGA-FW-A3R5-06	ICA1	ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8183504:8183602:8196745:8196844:8198156:8198282,	8196746	8196844	8196821	8196821	Nonsense_Mutation	C	T	p.Y243X
SKCM	TCGA-FW-A3R5-06	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469372	21469372	Nonsense_Mutation	C	T	p.Q197X
SKCM	TCGA-FW-A3R5-06	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	34101613:34101659:34118468:34118798:34125367:34125704,	34118469	34118798	34118537	34118537	Nonsense_Mutation	C	T	p.Q383X
SKCM	TCGA-FW-A3R5-06	PON1	ENST00000433729.1,ENST00000222381.3,ENST00000542556.1	chr7	94931516:94931645:94935596:94935678:94937322:94937523,	94935597	94935678	94935616	94935616	Nonsense_Mutation	C	T	p.W254X
SKCM	TCGA-FW-A3R5-06	CALD1	ENST00000436461.2,ENST00000443197.1,ENST00000543443.1,ENST00000424922.1,ENST00000417172.1,ENST00000482470.1,ENST00000361901.2	chr7	134613504:134613651:134617738:134618141:134625842:134625988,	134617739	134618141	134617989	134617989	Nonsense_Mutation	C	T	p.Q157X
SKCM	TCGA-FW-A3R5-06	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157929346:157929387:157930985:157931207:157959622:157959983,	157930986	157931207	157931073	157931073	Nonsense_Mutation	G	A	p.R349X
SKCM	TCGA-FW-A3R5-06	FGL1	ENST00000518650.1,ENST00000398056.2,ENST00000427924.1,ENST00000522444.1,ENST00000398054.1,ENST00000381841.2,ENST00000522636.1,ENST00000381840.2	chr8	17722166:17722260:17726056:17726244:17726424:17726510,	17726057	17726244	17726125	17726125	Nonsense_Mutation	C	T	p.W237X
SKCM	TCGA-FW-A3R5-06	INTS10	ENST00000521008.1,ENST00000397977.3	chr8	19701638:19701749:19703214:19703308:19709159:19709185,	19703215	19703308	19703292	19703292	Nonsense_Mutation	C	T	p.Q654X
SKCM	TCGA-FW-A3R5-06	ADAMDEC1	ENST00000538205.1,ENST00000520193.1,ENST00000522298.1,ENST00000256412.4	chr8	24255992:24256064:24256386:24256553:24256905:24256987,	24256387	24256553	24256502	24256502	Nonsense_Mutation	G	A	p.W214X
SKCM	TCGA-FW-A3R5-06	LAPTM4B	ENST00000445593.2,ENST00000521545.2	chr8	98831367:98831466:98837285:98837381:98863624:98863702,	98837286	98837381	98837319	98837319	Nonsense_Mutation	C	T	p.R272X
SKCM	TCGA-FW-A3R5-06	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	101020724:101020797:101051158:101051260:101052189:101052315,	101051159	101051260	101051255	101051255	Nonsense_Mutation	C	T	p.W690X
SKCM	TCGA-FW-A3R5-06	PKHD1L1	ENST00000378402.5	chr8	110437313:110437461:110439230:110439385:110441568:110441691,	110439231	110439385	110439352	110439352	Nonsense_Mutation	G	A	p.W989X
SKCM	TCGA-FW-A3R5-06	TRAPPC9	ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	141445210:141445339:141449150:141449296:141460888:141461029,	141449151	141449296	141449223	141449223	Nonsense_Mutation	G	A	p.Q220X
SKCM	TCGA-FW-A3R5-06	NAA35	ENST00000361671.5	chr9	88593181:88593296:88611313:88611492:88618499:88618559,	88611314	88611492	88611379	88611379	Nonsense_Mutation	C	T	p.R315X
SKCM	TCGA-FW-A3R5-06	PMPCA	ENST00000371717.3,ENST00000444897.1,ENST00000399219.3	chr9	139313279:139313370:139313495:139313558:139316283:139316428,	139313496	139313558	139313499	139313499	Nonsense_Mutation	C	T	p.R402X
SKCM	TCGA-EE-A2GS-06	ATG2A	ENST00000421419.2,ENST00000418259.1,ENST00000377264.3	chr11	64675219:64675362:64676462:64676622:64676742:64676839,	64676463	64676622	64676581	64676581	Nonsense_Mutation	C	T	p.W749X
SKCM	TCGA-EE-A2M7-06	RTKN	ENST00000272430.5,ENST00000305557.5,ENST00000233330.6	chr2	74654295:74654400:74654550:74654719:74655394:74655435,	74654551	74654719	74654713	74654713	Nonsense_Mutation	G	A	p.R315X
SKCM	TCGA-FS-A4F5-06	HRASLS5	ENST00000540857.1,ENST00000539221.1,ENST00000538712.1,ENST00000301790.4	chr11	63233631:63233844:63235828:63235937:63258358:63258411,63233631:63233844:63235828:63235937:63256342:63256448,	63235829	63235937	63235895	63235895	Nonsense_Mutation	G	A	p.R140X
SKCM	TCGA-FS-A4F5-06	RSF1	ENST00000308488.6,ENST00000528095.1,ENST00000360355.2	chr11	77413445:77413540:77436589:77436744:77451775:77451981,	77436590	77436744	77436740	77436740	Nonsense_Mutation	G	A	p.R195X
SKCM	TCGA-FS-A4F5-06	WDR66	ENST00000397454.2,ENST00000288912.4	chr12	122396848:122397000:122398490:122398664:122399883:122400068,	122398491	122398664	122398590	122398590	Nonsense_Mutation	C	T	p.R745X
SKCM	TCGA-FS-A4F5-06	AK5	ENST00000344720.5,ENST00000530826.1,ENST00000354567.2	chr1	77984248:77984412:77987511:77987628:78001531:78001570,	77987512	77987628	77987620	77987620	Nonsense_Mutation	G	T	p.G448X
SKCM	TCGA-FS-A4F5-06	RSPH1	ENST00000493019.1,ENST00000291536.3,ENST00000398352.3	chr21	43896007:43896157:43897400:43897554:43902746:43902818,	43897401	43897554	43897468	43897468	Nonsense_Mutation	C	T	p.W220X
SKCM	TCGA-FS-A4F5-06	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000482356.1,ENST00000478741.1	chr3	121810447:121810497:121822358:121822694:121825044:121825165,	121822359	121822694	121822572	121822572	Nonsense_Mutation	G	A	p.W11X
SKCM	TCGA-FS-A4F5-06	TF	ENST00000494430.1	chr3	133472438:133472547:133473346:133473515:133474206:133474258,	133473347	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132X
SKCM	TCGA-FS-A4F5-06	TF	ENST00000493011.1,ENST00000482271.1,ENST00000264998.3,ENST00000402696.3	chr3	133472438:133472547:133473338:133473515:133474206:133474258,	133473339	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132X
SKCM	TCGA-FS-A4F5-06	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146823838	146823838	Nonsense_Mutation	C	T	p.W191X
SKCM	TCGA-FS-A4F5-06	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6026709	6026709	Nonsense_Mutation	G	A	p.R563X
SKCM	TCGA-FS-A4F5-06	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619812	114619812	Nonsense_Mutation	C	T	p.Q266X
SKCM	TCGA-FS-A4F5-06	MAOA	ENST00000542639.1,ENST00000497485.1,ENST00000338702.3	chrX	43552537:43552675:43571118:43571223:43571951:43572043,	43571119	43571223	43571159	43571159	Nonsense_Mutation	G	A	p.W116X
SKCM	TCGA-EB-A41B-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323751	59323751	Nonsense_Mutation	C	T	p.R244X
SKCM	TCGA-EB-A41B-01	CLHC1	ENST00000407122.1,ENST00000406076.1,ENST00000401408.1	chr2	55433405:55433512:55436539:55436652:55436765:55436788,55435761:55435846:55436539:55436652:55436765:55436788,	55436540	55436652	55436561	55436561	Nonsense_Mutation	G	A	p.Q265X
SKCM	TCGA-EB-A41B-01	LRTM1	ENST00000493075.1	chr3	54952359:54952919:54958645:54959242:55000954:55001115,	54958646	54959242	54958704	54958704	Nonsense_Mutation	C	T	p.W182X
SKCM	TCGA-EB-A41B-01	DNAH5	ENST00000265104.4	chr5	13777315:13777464:13780937:13781068:13786287:13786460,	13780938	13781068	13781044	13781044	Nonsense_Mutation	G	A	p.Q2949X
SKCM	TCGA-EB-A41B-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373727	36373727	Nonsense_Mutation	C	T	p.W348X
SKCM	TCGA-EE-A183-06	ACSM2B	ENST00000569163.1	chr16	20559715:20559795:20563465:20563619:20565098:20565145,20560932:20561200:20563465:20563619:20565098:20565145,	20563466	20563619	20563565	20563565	Nonsense_Mutation	C	T	p.W265X
SKCM	TCGA-EE-A183-06	EDN3	ENST00000371028.2,ENST00000395654.3,ENST00000371025.3,ENST00000311585.7	chr20	57875757:57875919:57876464:57876777:57896071:57896248,	57876465	57876777	57876762	57876762	Nonsense_Mutation	G	A	p.W117X
SKCM	TCGA-EE-A183-06	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32015510:32015789:32016139:32016427:32017046:32017364,	32016140	32016427	32016248	32016248	Nonsense_Mutation	G	A	p.R3311X
SKCM	TCGA-FR-A69P-06	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184931615	184931615	Nonsense_Mutation	C	T	p.Q542X
SKCM	TCGA-FS-A1ZF-06	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000430577.2,ENST00000436828.1,ENST00000395851.1,ENST00000585296.1,ENST00000268712.3	chr17	16075176:16075309:16089867:16090001:16097775:16097925,	16089868	16090001	16089914	16089914	Nonsense_Mutation	G	A	p.R66X
SKCM	TCGA-FS-A1ZF-06	NUCKS1	ENST00000367142.4	chr1	205693053:205693109:205696827:205696933:205698699:205698749,	205696828	205696933	205696889	205696889	Nonsense_Mutation	G	A	p.R38X
SKCM	TCGA-FS-A1ZF-06	WNT7A	ENST00000285018.4	chr3	13857754:13860920:13896028:13896300:13916443:13916610,	13896029	13896300	13896034	13896034	Nonsense_Mutation	G	A	p.R189X
SKCM	TCGA-EB-A553-01	NAA16	ENST00000379406.3,ENST00000463114.1,ENST00000497143.1	chr13	41941574:41941788:41943225:41943419:41946338:41946447,	41943226	41943419	41943342	41943342	Nonsense_Mutation	C	T	p.Q624X
SKCM	TCGA-EB-A553-01	UBXN2A	ENST00000535786.1,ENST00000309033.4,ENST00000404924.1	chr2	24181170:24181225:24194145:24194284:24199838:24199945,	24194146	24194284	24194228	24194228	Nonsense_Mutation	G	T	p.E42X
SKCM	TCGA-EB-A553-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557689	210557689	Nonsense_Mutation	G	A	p.W265X
SKCM	TCGA-EB-A553-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557689	210557689	Nonsense_Mutation	G	A	p.W265X
SKCM	TCGA-EB-A553-01	HDAC4	ENST00000543185.1,ENST00000463007.1,ENST00000345617.3	chr2	240036748:240037006:240048151:240048375:240055940:240056139,	240048152	240048375	240048223	240048223	Nonsense_Mutation	G	A	p.Q483X
SKCM	TCGA-EB-A553-01	HDAC4	ENST00000541256.1,ENST00000535493.1,ENST00000493582.1	chr2	240036748:240037006:240048151:240048390:240055940:240056139,	240048152	240048390	240048223	240048223	Nonsense_Mutation	G	A	p.Q483X
SKCM	TCGA-EB-A553-01	DNAJC21	ENST00000303525.7,ENST00000382021.2	chr5	34929697:34930021:34933919:34934013:34935814:34935938,	34933920	34934013	34933922	34933922	Nonsense_Mutation	A	T	p.K34X
SKCM	TCGA-EB-A553-01	REPS1	ENST00000409812.2,ENST00000367663.4,ENST00000450536.2,ENST00000258062.5,ENST00000415951.2,ENST00000529597.1,ENST00000431346.2	chr6	139264649:139264713:139264989:139265152:139265634:139265682,	139264990	139265152	139265137	139265137	Nonsense_Mutation	G	A	p.R257X
SKCM	TCGA-EE-A3J4-06	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100922154:100922299:100933177:100933483:100962490:100962607,	100933178	100933483	100933232	100933232	Nonsense_Mutation	G	A	p.Q126X
SKCM	TCGA-EE-A3J4-06	KCNMB1	ENST00000521859.1	chr5	169810682:169810854:169812317:169812475:169816262:169816638,	169812318	169812475	169812393	169812393	Nonsense_Mutation	C	T	p.W20X
SKCM	TCGA-EE-A3J4-06	FAAH2	ENST00000374900.4	chrX	57337025:57337162:57358030:57358240:57367703:57367823,	57358031	57358240	57358231	57358231	Nonsense_Mutation	G	T	p.G205X
SKCM	TCGA-ER-A19P-06	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7166164:7166415:7167978:7168105:7170547:7170762,	7167979	7168105	7168046	7168046	Nonsense_Mutation	T	A	p.R515X
SKCM	TCGA-ER-A19P-06	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199780	20199780	Nonsense_Mutation	C	T	p.W68X
SKCM	TCGA-ER-A19P-06	PDHA1	ENST00000540249.1	chrX	19371199:19371291:19373466:19373622:19373803:19373875,	19373467	19373622	19373504	19373504	Nonsense_Mutation	G	A	p.W221X
SKCM	TCGA-D3-A1Q9-06	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357602	50357602	Nonsense_Mutation	C	A	p.E447X
SKCM	TCGA-EE-A2MJ-06	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022525	64022525	Nonsense_Mutation	C	T	p.W39X
SKCM	TCGA-EE-A2MJ-06	LILRB1	ENST00000396331.1,ENST00000434867.2,ENST00000396327.3,ENST00000396315.1,ENST00000396332.4,ENST00000396321.2,ENST00000396317.1,ENST00000418536.2,ENST00000324602.7	chr19	55145424:55145472:55146091:55146214:55146554:55146630,	55146092	55146214	55146187	55146187	Nonsense_Mutation	C	T	p.R486X
SKCM	TCGA-EE-A2MJ-06	LILRB1	ENST00000462628.1	chr19	55145424:55145472:55146038:55146214:55146554:55146630,	55146039	55146214	55146187	55146187	Nonsense_Mutation	C	T	p.R486X
SKCM	TCGA-EE-A2MJ-06	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510946	169510946	Nonsense_Mutation	G	A	p.Q1128X
SKCM	TCGA-EE-A2MJ-06	SULT1C2	ENST00000251481.6,ENST00000409067.2	chr2	108910684:108910810:108917293:108917391:108921029:108921106,	108917294	108917391	108917375	108917375	Nonsense_Mutation	G	A	p.W120X
SKCM	TCGA-EE-A2MJ-06	SULT1C2	ENST00000438339.1	chr2	108910684:108910810:108917355:108917391:108921029:108921106,	108917356	108917391	108917375	108917375	Nonsense_Mutation	G	A	p.W120X
SKCM	TCGA-EE-A2MJ-06	SULT1C2	ENST00000437390.2	chr2	108910684:108910810:108917251:108917391:108921029:108921106,	108917252	108917391	108917375	108917375	Nonsense_Mutation	G	A	p.W120X
SKCM	TCGA-EE-A2MJ-06	TNIP3	ENST00000507879.1,ENST00000057513.3,ENST00000509841.1,ENST00000515605.1,ENST00000511909.1,ENST00000454328.1	chr4	122063880:122063931:122068203:122068329:122071257:122071270,	122068204	122068329	122068287	122068287	Nonsense_Mutation	G	A	p.R288X
SKCM	TCGA-EE-A2MJ-06	SH3PXD2B	ENST00000518522.1	chr5	171760502:171760773:171773139:171773265:171774286:171774336,	171773140	171773265	171773190	171773190	Nonsense_Mutation	G	A	p.Q380X
SKCM	TCGA-EE-A2MJ-06	PEX6	ENST00000244546.4	chr6	42941740:42941824:42942612:42942776:42946006:42946888,	42942613	42942776	42942623	42942623	Nonsense_Mutation	G	A	p.Q346X
SKCM	TCGA-EE-A2MJ-06	ABCB1	ENST00000543898.1,ENST00000265724.3	chr7	87179166:87179370:87179486:87179612:87179783:87179894,	87179487	87179612	87179525	87179525	Nonsense_Mutation	G	A	p.Q438X
SKCM	TCGA-EE-A2MJ-06	KRIT1	ENST00000394505.2,ENST00000340022.2,ENST00000394503.2,ENST00000394507.1,ENST00000412043.2	chr7	91864121:91864237:91864716:91864960:91865726:91865856,	91864717	91864960	91864731	91864731	Nonsense_Mutation	G	A	p.Q239X
SKCM	TCGA-FS-A4F8-06	PRSS16	ENST00000466364.1	chr6	27215509:27215586:27215660:27215827:27220586:27220728,27215509:27215586:27215660:27215827:27222471:27222478,	27215661	27215827	27215684	27215684	Nonsense_Mutation	G	T	p.E32X
SKCM	TCGA-FS-A4F8-06	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509799	106509799	Nonsense_Mutation	G	A	p.W598X
SKCM	TCGA-EB-A24D-01	SLCO2B1	ENST00000428359.2,ENST00000527180.1,ENST00000289575.5	chr11	74862257:74862442:74876831:74876994:74883423:74883614,74862257:74862442:74876831:74876994:74880217:74880286,74875007:74875145:74876831:74876994:74880217:74880286,	74876832	74876994	74876892	74876892	Nonsense_Mutation	C	T	p.R116X
SKCM	TCGA-EB-A24D-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702643	52702643	Nonsense_Mutation	A	C	p.Y85X
SKCM	TCGA-EB-A24D-01	SCARA5	ENST00000380385.2,ENST00000354914.3	chr8	27727752:27729587:27737085:27737283:27762294:27762351,	27737086	27737283	27737098	27737098	Nonsense_Mutation	G	A	p.R447X
SKCM	TCGA-DA-A3F5-06	ATP8B4	ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1	chr15	50215575:50215691:50223315:50223504:50226213:50226379,	50223316	50223504	50223484	50223484	Nonsense_Mutation	G	A	p.Q492X
SKCM	TCGA-DA-A3F5-06	CHD2	ENST00000557381.1,ENST00000394196.4	chr15	93489267:93489446:93492181:93492306:93496586:93496803,	93492182	93492306	93492257	93492257	Nonsense_Mutation	C	T	p.R485X
SKCM	TCGA-DA-A3F5-06	KIAA1324	ENST00000457623.2	chr1	109715109:109715190:109716095:109716201:109727666:109727755,	109716096	109716201	109716108	109716108	Nonsense_Mutation	C	T	p.R237X
SKCM	TCGA-DA-A3F5-06	KIAA1324	ENST00000529753.1	chr1	109715115:109715190:109716095:109716179:109730798:109730976,	109716096	109716179	109716108	109716108	Nonsense_Mutation	C	T	p.R237X
SKCM	TCGA-DA-A3F5-06	UXS1	ENST00000497604.1,ENST00000409032.1,ENST00000283148.7,ENST00000409501.3,ENST00000540130.1	chr2	106710059:106710613:106713173:106713277:106715171:106715229,	106713174	106713277	106713260	106713260	Nonsense_Mutation	G	A	p.Q349X
SKCM	TCGA-DA-A3F5-06	ENTPD8	ENST00000371506.2,ENST00000472938.1,ENST00000344119.2	chr9	140331158:140331203:140331320:140331480:140331610:140331761,	140331321	140331480	140331357	140331357	Nonsense_Mutation	C	T	p.W173X
SKCM	TCGA-DA-A3F5-06	ENTPD8	ENST00000493135.1	chr9	140331158:140331203:140331320:140331442:140331610:140331761,	140331321	140331442	140331357	140331357	Nonsense_Mutation	C	T	p.W173X
SKCM	TCGA-ER-A19M-06	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720321	3720321	Nonsense_Mutation	G	A	p.Q1334X
SKCM	TCGA-ER-A19M-06	EIF4G3	ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21205815:21206013:21212693:21212864:21220009:21220129,	21212694	21212864	21212828	21212828	Nonsense_Mutation	G	A	p.Q708X
SKCM	TCGA-ER-A19M-06	TRAF5	ENST00000336184.2,ENST00000261464.5,ENST00000367004.3	chr1	211534429:211534504:211538717:211538810:211542793:211542934,	211538718	211538810	211538796	211538796	Nonsense_Mutation	C	T	p.Q259X
SKCM	TCGA-ER-A19M-06	WDPCP	ENST00000409562.3,ENST00000272321.7,ENST00000398544.3,ENST00000409120.1,ENST00000409835.1,ENST00000409199.1,ENST00000417238.1	chr2	63609040:63609229:63631182:63631792:63660878:63661064,	63631183	63631792	63631766	63631766	Nonsense_Mutation	C	T	p.W284X
SKCM	TCGA-ER-A19M-06	ITIH1	ENST00000540715.1,ENST00000542827.1,ENST00000273283.2	chr3	52812962:52813062:52813447:52813610:52814284:52814385,	52813448	52813610	52813518	52813518	Nonsense_Mutation	C	T	p.Q19X
SKCM	TCGA-ER-A19M-06	ITIH1	ENST00000480409.1	chr3	52812962:52813062:52813447:52813893:52814284:52814385,	52813448	52813893	52813518	52813518	Nonsense_Mutation	C	T	p.Q19X
SKCM	TCGA-EE-A181-06	ERBB3	ENST00000415288.2,ENST00000551085.1,ENST00000267101.3,ENST00000550070.2	chr12	56487882:56487973:56488185:56488340:56489040:56489094,	56488186	56488340	56488219	56488219	Nonsense_Mutation	C	T	p.R580X
SKCM	TCGA-EE-A181-06	MCTP2	ENST00000456504.1,ENST00000357742.4	chr15	94945128:94945248:94983404:94983527:94986147:94986189,	94983405	94983527	94983425	94983425	Nonsense_Mutation	G	A	p.W702X
SKCM	TCGA-EE-A181-06	FOXK2	ENST00000473637.2,ENST00000526383.2,ENST00000335255.5	chr17	80529599:80529746:80540616:80540810:80541888:80541906,	80540617	80540810	80540674	80540674	Nonsense_Mutation	C	T	p.Q323X
SKCM	TCGA-EE-A181-06	EMILIN2	ENST00000254528.3	chr18	2847806:2847929:2884961:2885137:2890558:2892484,	2884962	2885137	2885025	2885025	Nonsense_Mutation	G	A	p.W107X
SKCM	TCGA-EE-A181-06	CCDC102B	ENST00000360242.5,ENST00000319445.6,ENST00000584156.1	chr18	66541905:66542022:66564455:66564665:66678170:66678341,	66564456	66564665	66564615	66564615	Nonsense_Mutation	C	T	p.Q405X
SKCM	TCGA-EE-A181-06	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000480988.1,ENST00000369666.1,ENST00000497457.1,ENST00000369664.1,ENST00000543570.1,ENST00000369668.2,ENST00000343210.7,ENST00000479436.1,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000360743.4,ENST00000361846.3,ENST00000418497.1	chr1	113134146:113134225:113140592:113140708:113143415:113143470,	113140593	113140708	113140610	113140610	Nonsense_Mutation	A	T	p.L202X
SKCM	TCGA-EE-A181-06	NEK7	ENST00000367385.4,ENST00000538004.1,ENST00000391974.3	chr1	198201682:198201767:198222169:198222310:198231704:198231753,	198222170	198222310	198222215	198222215	Nonsense_Mutation	C	T	p.R35X
SKCM	TCGA-EE-A181-06	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040388	103040388	Nonsense_Mutation	C	G	p.S63X
SKCM	TCGA-EE-A181-06	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82580168	82580168	Nonsense_Mutation	G	A	p.R3246X
SKCM	TCGA-EE-A181-06	KLHL13	ENST00000541812.1,ENST00000371876.1,ENST00000469946.1,ENST00000447671.2,ENST00000545703.1,ENST00000539496.1,ENST00000371878.1,ENST00000540167.1,ENST00000371882.1,ENST00000262820.3	chrX	117053483:117053680:117054200:117054333:117079396:117079538,	117054201	117054333	117054318	117054318	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-EE-A29C-06	NUCKS1	ENST00000367142.4	chr1	205693053:205693109:205696827:205696933:205698699:205698749,	205696828	205696933	205696889	205696889	Nonsense_Mutation	G	A	p.R38X
SKCM	TCGA-EE-A29C-06	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640672	17640672	Nonsense_Mutation	G	A	p.Q161X
SKCM	TCGA-EE-A29C-06	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1	chr3	138413627:138413749:138417748:138417937:138423284:138423335,	138417749	138417937	138417774	138417774	Nonsense_Mutation	C	T	p.W582X
SKCM	TCGA-D3-A5GU-06	FGD4	ENST00000534526.2,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000493087.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000531134.1	chr12	32778587:32778713:32786482:32786623:32791588:32791729,	32786483	32786623	32786516	32786516	Nonsense_Mutation	C	T	p.Q599X
SKCM	TCGA-D3-A5GU-06	NMRAL1	ENST00000574425.1,ENST00000404295.3,ENST00000283429.6,ENST00000574733.1	chr16	4516211:4516403:4519227:4519466:4524093:4524167,	4519228	4519466	4519332	4519332	Nonsense_Mutation	G	A	p.Q59X
SKCM	TCGA-D3-A5GU-06	SHCBP1	ENST00000303383.3,ENST00000566016.1	chr16	46637886:46638055:46638139:46638373:46642208:46642301,	46638140	46638373	46638351	46638351	Nonsense_Mutation	G	A	p.R238X
SKCM	TCGA-D3-A5GU-06	ZNF208	ENST00000601773.1,ENST00000397126.4	chr19	22170017:22170113:22171584:22171711:22193593:22193721,	22171585	22171711	22171661	22171661	Nonsense_Mutation	C	T	p.W18X
SKCM	TCGA-D3-A5GU-06	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1,ENST00000509731.1	chr5	33462203:33462308:33463857:33463930:33466975:33467022,	33463858	33463930	33463925	33463925	Nonsense_Mutation	C	T	p.Q635X
SKCM	TCGA-D3-A5GU-06	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141244203	141244203	Nonsense_Mutation	G	A	p.Q565X
SKCM	TCGA-D3-A5GU-06	ZNF346	ENST00000358149.3,ENST00000503039.1,ENST00000503425.1,ENST00000261948.4	chr5	176468778:176468871:176477751:176477937:176489058:176489152,176471467:176471534:176477751:176477937:176489058:176489152,	176477752	176477937	176477760	176477760	Nonsense_Mutation	C	T	p.Q176X
SKCM	TCGA-D3-A5GU-06	ZNF346	ENST00000511834.1	chr5	176471467:176471534:176477703:176477937:176489058:176489152,	176477704	176477937	176477760	176477760	Nonsense_Mutation	C	T	p.Q176X
SKCM	TCGA-D3-A5GU-06	HGF	ENST00000453411.1,ENST00000457544.2	chr7	81374315:81374436:81381435:81381563:81386504:81386619,	81381436	81381563	81381529	81381529	Nonsense_Mutation	G	A	p.R178X
SKCM	TCGA-D3-A5GU-06	HGF	ENST00000444829.2,ENST00000222390.5	chr7	81374315:81374436:81381435:81381578:81386504:81386619,	81381436	81381578	81381529	81381529	Nonsense_Mutation	G	A	p.R178X
SKCM	TCGA-D3-A5GU-06	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91682045:91682272:91690573:91690736:91691587:91691800,	91690574	91690736	91690670	91690670	Nonsense_Mutation	C	T	p.R1900X
SKCM	TCGA-ER-A19G-06	RPL5	ENST00000470843.1	chr1	93297654:93297674:93298945:93299015:93299101:93299217,	93298946	93299015	93298955	93298955	Nonsense_Mutation	A	T	p.K5X
SKCM	TCGA-ER-A19G-06	ABL2	ENST00000392043.3,ENST00000509520.1,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3,ENST00000504324.1	chr1	179090729:179091002:179095511:179095807:179100445:179100616,	179095512	179095807	179095764	179095764	Nonsense_Mutation	C	T	p.W109X
SKCM	TCGA-ER-A19G-06	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6,ENST00000423048.1	chr2	73777393:73777564:73784346:73784481:73786098:73786269,	73784347	73784481	73784358	73784358	Nonsense_Mutation	C	T	p.Q3363X
SKCM	TCGA-ER-A19G-06	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755896	153755896	Nonsense_Mutation	C	T	p.R210X
SKCM	TCGA-ER-A19G-06	SIM1	ENST00000369208.3,ENST00000262901.4	chr6	100838958:100838967:100841362:100841765:100868665:100868834,	100841363	100841765	100841464	100841464	Nonsense_Mutation	C	T	p.W490X
SKCM	TCGA-ER-A19G-06	AGK	ENST00000355413.4,ENST00000473247.1	chr7	141336759:141336817:141341047:141341198:141341610:141341708,	141341048	141341198	141341053	141341053	Nonsense_Mutation	G	A	p.W244X
SKCM	TCGA-ER-A19G-06	GDPD2	ENST00000538649.1	chrX	69642990:69643232:69645612:69645706:69645901:69645961,	69645613	69645706	69645640	69645640	Nonsense_Mutation	G	A	p.W79X
SKCM	TCGA-FS-A4FC-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830301	61830301	Nonsense_Mutation	C	T	p.W3446X
SKCM	TCGA-FS-A4FC-06	SIRT3	ENST00000524564.1	chr11	230451:230552:232982:233215:236047:236326,	232983	233215	233184	233184	Nonsense_Mutation	G	A	p.Q169X
SKCM	TCGA-FS-A4FC-06	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230571	46230571	Nonsense_Mutation	C	T	p.R274X
SKCM	TCGA-FS-A4FC-06	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405830	91405830	Nonsense_Mutation	G	A	p.Q361X
SKCM	TCGA-FS-A4FC-06	ARHGAP31	ENST00000264245.4,ENST00000482743.1	chr3	119084162:119084265:119087218:119087363:119099750:119099833,	119087219	119087363	119087271	119087271	Nonsense_Mutation	C	T	p.Q86X
SKCM	TCGA-FS-A4FC-06	POLN	ENST00000511885.2,ENST00000382865.1,ENST00000515357.1	chr4	2181034:2181192:2194930:2195043:2200250:2200444,	2194931	2195043	2195030	2195030	Nonsense_Mutation	G	A	p.Q308X
SKCM	TCGA-FS-A4FC-06	PAM	ENST00000438793.3,ENST00000348126.2	chr5	102355493:102355547:102360834:102361038:102363885:102363926,102355493:102355547:102360834:102361038:102364590:102364814,102355493:102355547:102360834:102361038:102363888:102363942,	102360835	102361038	102361015	102361015	Nonsense_Mutation	G	A	p.W889X
SKCM	TCGA-FS-A4FC-06	PAM	ENST00000504456.1	chr5	102355493:102355547:102360837:102361038:102363888:102363942,102355493:102355547:102360837:102361038:102363885:102363926,	102360838	102361038	102361015	102361015	Nonsense_Mutation	G	A	p.W889X
SKCM	TCGA-FS-A4FC-06	STK10	ENST00000176763.5	chr5	171517235:171517366:171520415:171520964:171523429:171523564,	171520416	171520964	171520703	171520703	Nonsense_Mutation	G	A	p.Q423X
SKCM	TCGA-FS-A4FC-06	TSPAN12	ENST00000450414.1,ENST00000222747.3,ENST00000415871.1	chr7	120428427:120428951:120446602:120446746:120450516:120450624,	120446603	120446746	120446608	120446608	Nonsense_Mutation	G	A	p.Q203X
SKCM	TCGA-FS-A4FC-06	CSMD3	ENST00000343508.3,ENST00000297405.5,ENST00000339701.3,ENST00000352409.3	chr8	113314021:113314195:113316949:113317144:113318235:113318421,	113316950	113317144	113316976	113316976	Nonsense_Mutation	C	T	p.W2747X
SKCM	TCGA-ER-A19Q-06	AGTRAP	ENST00000376629.4,ENST00000314340.5	chr1	11805859:11805894:11807496:11807602:11808471:11808646,	11807497	11807602	11807497	11807497	Nonsense_Mutation	G	A	p.W21X
SKCM	TCGA-ER-A19Q-06	UBR2	ENST00000372883.3,ENST00000372899.1,ENST00000372901.1	chr6	42652531:42652609:42655953:42656124:42657306:42657408,	42655954	42656124	42656027	42656027	Nonsense_Mutation	C	T	p.Q1643X
SKCM	TCGA-EB-A3XB-01	MRPS35	ENST00000081029.3	chr12	27876979:27877119:27890471:27890541:27908113:27908470,27888379:27888489:27890471:27890541:27908113:27908470,	27890472	27890541	27890496	27890496	Nonsense_Mutation	C	G	p.Y219X
SKCM	TCGA-EB-A3XB-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3149142:3149199:3151691:3151891:3154944:3155086,	3151692	3151891	3151782	3151782	Nonsense_Mutation	G	A	p.R585X
SKCM	TCGA-EB-A3XB-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359662	19359662	Nonsense_Mutation	G	A	p.W1264X
SKCM	TCGA-EB-A3XB-01	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1616833:1617151:1629697:1630051,1615912:1616245:1616833:1617151:1629697:1630054,	1616834	1617151	1617037	1617037	Nonsense_Mutation	C	T	p.W182X
SKCM	TCGA-EB-A3XB-01	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819167	20819167	Nonsense_Mutation	G	A	p.R364X
SKCM	TCGA-EB-A3XB-01	TPST2	ENST00000398110.2,ENST00000338754.4	chr22	26932253:26932452:26936754:26937684:26940569:26940641,	26936755	26937684	26937530	26937530	Nonsense_Mutation	G	A	p.Q23X
SKCM	TCGA-EB-A3XB-01	IQCA1	ENST00000309507.5,ENST00000409907.3,ENST00000418802.1,ENST00000465621.1,ENST00000254653.5	chr2	237300971:237300993:237308055:237308131:237327791:237327914,	237308056	237308131	237308114	237308114	Nonsense_Mutation	C	T	p.W343X
SKCM	TCGA-EB-A3XB-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099306	133099306	Nonsense_Mutation	C	T	p.Q251X
SKCM	TCGA-FS-A4F9-06	GDPD5	ENST00000336898.3,ENST00000529721.1	chr11	75160561:75160655:75160929:75161028:75167801:75167861,	75160930	75161028	75160974	75160974	Nonsense_Mutation	G	A	p.Q144X
SKCM	TCGA-FS-A4F9-06	SGCG	ENST00000537476.1,ENST00000218867.3,ENST00000545013.1	chr13	23824768:23824856:23853497:23853617:23869553:23869626,	23853498	23853617	23853608	23853608	Nonsense_Mutation	C	T	p.R166X
SKCM	TCGA-FS-A4F9-06	RPL35A	ENST00000464167.1,ENST00000448864.1	chr3	197678029:197678182:197680873:197681018:197682620:197682688,	197680874	197681018	197680974	197680974	Nonsense_Mutation	C	T	p.R89X
SKCM	TCGA-FS-A4F9-06	TPK1	ENST00000547966.1,ENST00000360057.3	chr7	144245583:144245695:144288515:144288662:144320258:144320354,	144288516	144288662	144288587	144288587	Nonsense_Mutation	G	A	p.Q144X
SKCM	TCGA-EE-A2M6-06	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1160X
SKCM	TCGA-EE-A2M6-06	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133948000:133948109:133953595:133953787:133961020:133961122,	133953596	133953787	133953646	133953646	Nonsense_Mutation	C	T	p.Q1698X
SKCM	TCGA-ER-A3ET-06	CSMD1	ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2823296:2823476:2824091:2824268:2830638:2830821,	2824092	2824268	2824193	2824193	Nonsense_Mutation	G	T	p.S3000X
SKCM	TCGA-ER-A3ET-06	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76920133:76920267:76931720:76931793:76937011:76937093,	76931721	76931793	76931728	76931728	Nonsense_Mutation	C	A	p.E1268X
SKCM	TCGA-GN-A265-06	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67816345:67816464:67816547:67816761:67817129:67817255,	67816548	67816761	67816662	67816662	Nonsense_Mutation	G	A	p.W596X
SKCM	TCGA-GN-A265-06	ACOT12	ENST00000307624.3	chr5	80631586:80631720:80638490:80638574:80639636:80639700,	80638491	80638574	80638515	80638515	Nonsense_Mutation	C	T	p.W368X
SKCM	TCGA-ER-A19K-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413734	138413734	Nonsense_Mutation	G	A	p.Q596X
SKCM	TCGA-ER-A19K-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157959622:157959983:157985018:157985187:157997862:157997965,	157985019	157985187	157985081	157985081	Nonsense_Mutation	G	A	p.Q163X
SKCM	TCGA-EE-A2MI-06	MRO	ENST00000431965.2,ENST00000588444.1	chr18	48325660:48325760:48326405:48326513:48331523:48331706,	48326406	48326513	48326495	48326495	Nonsense_Mutation	G	A	p.Q202X
SKCM	TCGA-EE-A2MI-06	DNMT3B	ENST00000348286.2,ENST00000328111.2,ENST00000353855.2,ENST00000201963.3,ENST00000344505.4	chr20	31372563:31372665:31374307:31374433:31375035:31375257,	31374308	31374433	31374317	31374317	Nonsense_Mutation	C	T	p.R106X
SKCM	TCGA-EE-A2MI-06	FAM19A1	ENST00000478136.1,ENST00000496687.1	chr3	68466432:68466570:68587906:68588031:68593636:68594772,	68587907	68588031	68587994	68587994	Nonsense_Mutation	G	A	p.W116X
SKCM	TCGA-EE-A2MI-06	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751222	13751222	Nonsense_Mutation	G	A	p.Q3726X
SKCM	TCGA-EE-A2MI-06	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505078.1,ENST00000312216.8	chr5	94114814:94114868:94134717:94134837:94204037:94204157,	94134718	94134837	94134766	94134766	Nonsense_Mutation	C	T	p.W615X
SKCM	TCGA-EE-A2MI-06	SLC4A9	ENST00000507527.1,ENST00000230993.6	chr5	139739799:139740051:139740324:139740557:139740838:139740952,	139740325	139740557	139740441	139740441	Nonsense_Mutation	G	A	p.W92X
SKCM	TCGA-EE-A2MI-06	SLC4A9	ENST00000506545.1,ENST00000432095.2	chr5	139739799:139740051:139740396:139740557:139740838:139740952,	139740397	139740557	139740441	139740441	Nonsense_Mutation	G	A	p.W92X
SKCM	TCGA-EE-A2MI-06	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922197	150922197	Nonsense_Mutation	G	A	p.Q2831X
SKCM	TCGA-EE-A2MI-06	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000357304.4	chr9	134319612:134319715:134321787:134322029:134322471:134322593,	134321788	134322029	134321958	134321958	Nonsense_Mutation	C	T	p.R262X
SKCM	TCGA-EB-A44Q-06	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156131136:156131309:156132734:156132885:156142616:156142797,	156132735	156132885	156132735	156132735	Nonsense_Mutation	G	A	p.W328X
SKCM	TCGA-EE-A2GT-06	IRF6	ENST00000542854.1,ENST00000367021.3	chr1	209963011:209963130:209963839:209964232:209965613:209965772,	209963840	209964232	209964116	209964116	Nonsense_Mutation	G	A	p.Q167X
SKCM	TCGA-EE-A2MS-06	ENTPD1	ENST00000371207.3,ENST00000543964.1,ENST00000453258.2,ENST00000371205.4,ENST00000539125.1,ENST00000371203.5,ENST00000483213.1	chr10	97604331:97604392:97605113:97605353:97607202:97607256,	97605114	97605353	97605216	97605216	Nonsense_Mutation	C	T	p.Q226X
SKCM	TCGA-EE-A2MS-06	ELF5	ENST00000312319.2,ENST00000257832.2,ENST00000429939.2	chr11	34501819:34501861:34502318:34502514:34503977:34504046,	34502319	34502514	34502436	34502436	Nonsense_Mutation	C	T	p.W185X
SKCM	TCGA-EE-A2MS-06	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577603	57577603	Nonsense_Mutation	C	T	p.R814X
SKCM	TCGA-EE-A2MS-06	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66466876:66467079:66467996:66468753:66469054:66469192,	66467997	66468753	66468095	66468095	Nonsense_Mutation	G	A	p.R1159X
SKCM	TCGA-EE-A2MS-06	NDUFS8	ENST00000453471.2,ENST00000432321.2,ENST00000525628.1,ENST00000531228.1,ENST00000313468.5,ENST00000526339.1	chr11	67799752:67799803:67800389:67800479:67800577:67800690,	67800390	67800479	67800476	67800476	Nonsense_Mutation	C	T	p.R66X
SKCM	TCGA-EE-A2MS-06	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320217	46320217	Nonsense_Mutation	A	C	p.Y1089X
SKCM	TCGA-EE-A2MS-06	TERF2	ENST00000603068.1,ENST00000569584.2,ENST00000254942.3,ENST00000566750.1	chr16	69402278:69402385:69404385:69404532:69406171:69406185,	69404386	69404532	69404472	69404472	Nonsense_Mutation	G	A	p.Q252X
SKCM	TCGA-EE-A2MS-06	WRAP53	ENST00000498311.1,ENST00000467699.1	chr17	7592907:7593019:7604058:7604147:7604744:7604867,	7604059	7604147	7604071	7604071	Nonsense_Mutation	C	T	p.R219X
SKCM	TCGA-EE-A2MS-06	TOP3A	ENST00000321105.5,ENST00000542570.1,ENST00000583804.2,ENST00000584582.1,ENST00000580095.1,ENST00000582981.1	chr17	18194155:18194341:18195958:18196166:18198016:18198099,	18195959	18196166	18196150	18196150	Nonsense_Mutation	G	A	p.R364X
SKCM	TCGA-EE-A2MS-06	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844552	27844552	Nonsense_Mutation	C	T	p.Q596X
SKCM	TCGA-EE-A2MS-06	CD22	ENST00000544992.2	chr19	35835735:35835828:35835953:35836029:35837053:35837138,	35835954	35836029	35835957	35835957	Nonsense_Mutation	G	A	p.W712X
SKCM	TCGA-EE-A2MS-06	GPR153	ENST00000377893.2	chr1	6311397:6311590:6313777:6314207:6314609:6315074,	6313778	6314207	6314159	6314159	Nonsense_Mutation	C	T	p.W135X
SKCM	TCGA-EE-A2MS-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57X
SKCM	TCGA-EE-A2MS-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099639	168099639	Nonsense_Mutation	G	A	p.W357X
SKCM	TCGA-EE-A2MS-06	DCLK3	ENST00000416516.2	chr3	36753912:36757012:36759500:36759668:36763017:36763150,	36759501	36759668	36759552	36759552	Nonsense_Mutation	G	A	p.Q568X
SKCM	TCGA-EE-A2MS-06	TCAIM	ENST00000342649.4,ENST00000417237.1	chr3	44402856:44403010:44408947:44409200:44434346:44434469,	44408948	44409200	44408953	44408953	Nonsense_Mutation	C	T	p.R109X
SKCM	TCGA-EE-A2MS-06	SULT1B1	ENST00000310613.3	chr4	70596218:70596399:70599130:70599225:70599855:70599982,	70599131	70599225	70599185	70599185	Nonsense_Mutation	C	T	p.W181X
SKCM	TCGA-EE-A2MS-06	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394864	86394864	Nonsense_Mutation	C	T	p.Q135X
SKCM	TCGA-EE-A2MS-06	NRCAM	ENST00000379028.3,ENST00000425651.2,ENST00000379022.4	chr7	107800805:107800937:107807365:107807518:107808721:107808847,	107807366	107807518	107807505	107807505	Nonsense_Mutation	C	T	p.W1109X
SKCM	TCGA-EE-A2MS-06	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2,ENST00000277165.6	chr9	96259752:96259881:96261071:96261168:96277948:96278049,	96261072	96261168	96261096	96261096	Nonsense_Mutation	C	T	p.R320X
SKCM	TCGA-EE-A2MS-06	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408083	130408083	Nonsense_Mutation	C	T	p.W1274X
SKCM	TCGA-EE-A3AC-06	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380832	380832	Nonsense_Mutation	G	A	p.W959X
SKCM	TCGA-EE-A3AC-06	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380832	380832	Nonsense_Mutation	G	A	p.W959X
SKCM	TCGA-EE-A3AC-06	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51686091	51686091	Nonsense_Mutation	G	A	p.R267X
SKCM	TCGA-EE-A3AC-06	ABCC1	ENST00000399408.2,ENST00000575422.1,ENST00000399410.3,ENST00000572882.1,ENST00000345148.5	chr16	16173208:16173335:16177222:16177399:16184261:16184445,16173208:16173335:16177222:16177399:16180680:16180815,	16177223	16177399	16177255	16177255	Nonsense_Mutation	G	A	p.W716X
SKCM	TCGA-EE-A3AC-06	SAE1	ENST00000270225.7,ENST00000414294.2,ENST00000413379.3,ENST00000594144.1,ENST00000596995.1,ENST00000392776.3,ENST00000597808.1,ENST00000600706.1,ENST00000594526.1	chr19	47646750:47646862:47653458:47653632:47656154:47656257,	47653459	47653632	47653513	47653513	Nonsense_Mutation	C	T	p.R89X
SKCM	TCGA-EE-A3AC-06	ZSWIM5	ENST00000359600.5	chr1	45516745:45516925:45524280:45524431:45525770:45525919,	45524281	45524431	45524428	45524428	Nonsense_Mutation	G	A	p.R369X
SKCM	TCGA-EE-A3AC-06	TRMT61B	ENST00000306108.5	chr2	29073193:29073271:29073937:29074164:29075273:29075365,	29073938	29074164	29074031	29074031	Nonsense_Mutation	G	A	p.Q407X
SKCM	TCGA-EE-A3AC-06	IL36G	ENST00000259205.4,ENST00000447128.1	chr2	113735605:113735655:113736196:113736270:113737585:113737725,113735605:113735655:113736196:113736270:113736797:113736857,	113736197	113736270	113736264	113736264	Nonsense_Mutation	C	T	p.Q17X
SKCM	TCGA-ER-A19N-06	ABCA10	ENST00000269081.4,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67189633:67189753:67189954:67190130:67190525:67190636,	67189955	67190130	67190038	67190038	Nonsense_Mutation	G	A	p.Q480X
SKCM	TCGA-ER-A19N-06	SPAG17	ENST00000336338.5	chr1	118565926:118566086:118567860:118568039:118570896:118571017,	118567861	118568039	118567963	118567963	Nonsense_Mutation	A	C	p.Y1269X
SKCM	TCGA-EE-A29P-06	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19056662:19056760:19058384:19058571:19063007:19063138,	19058385	19058571	19058495	19058495	Nonsense_Mutation	G	A	p.W445X
SKCM	TCGA-EE-A29P-06	CADM4	ENST00000222374.2	chr19	44130295:44130440:44130935:44131070:44131317:44131470,	44130936	44131070	44130962	44130962	Nonsense_Mutation	C	T	p.W158X
SKCM	TCGA-D9-A6E9-06	USP11	ENST00000480104.1,ENST00000218348.3,ENST00000469080.1,ENST00000377107.2	chrX	47102024:47102119:47102794:47103001:47103896:47103924,	47102795	47103001	47102868	47102868	Nonsense_Mutation	G	T	p.E596X
SKCM	TCGA-EE-A2GP-06	VWF	ENST00000261405.5,ENST00000538635.1	chr12	6220031:6220134:6230339:6230504:6232307:6232362,	6230340	6230504	6230460	6230460	Nonsense_Mutation	G	A	p.R34X
SKCM	TCGA-EE-A2GP-06	C1orf127	ENST00000520253.1,ENST00000377004.4	chr1	11014075:11014199:11015046:11015243:11017079:11017164,	11015047	11015243	11015049	11015049	Nonsense_Mutation	G	A	p.Q325X
SKCM	TCGA-EE-A2GP-06	TBC1D22A	ENST00000407381.3,ENST00000406733.1,ENST00000394449.2,ENST00000337137.4,ENST00000355704.3	chr22	47370185:47370295:47393529:47393605:47432966:47433094,	47393530	47393605	47393560	47393560	Nonsense_Mutation	C	T	p.Q386X
SKCM	TCGA-EE-A2GP-06	DPPA4	ENST00000495679.1,ENST00000487299.1,ENST00000335658.6	chr3	109047864:109047935:109049370:109049659:109050580:109050631,	109049371	109049659	109049623	109049623	Nonsense_Mutation	T	A	p.K143X
SKCM	TCGA-EE-A2GP-06	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28574495	28574495	Nonsense_Mutation	C	T	p.Q307X
SKCM	TCGA-EE-A2GP-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58X
SKCM	TCGA-EE-A2GP-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58X
SKCM	TCGA-EE-A3AB-06	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212515529:212515622:212519144:212519275:212520688:212520748,	212519145	212519275	212519229	212519229	Nonsense_Mutation	G	T	p.G163X
SKCM	TCGA-EE-A3AB-06	LMBRD2	ENST00000296603.4	chr5	36117836:36118018:36122381:36122565:36122949:36123063,	36122382	36122565	36122395	36122395	Nonsense_Mutation	A	T	p.Y369X
SKCM	TCGA-EE-A3AH-06	RARRES2	ENST00000467793.1,ENST00000466675.1,ENST00000482669.1,ENST00000223271.3	chr7	150036074:150036170:150037188:150037293:150037524:150037566,	150037189	150037293	150037221	150037221	Nonsense_Mutation	T	A	p.K83X
SKCM	TCGA-EE-A3AH-06	F9	ENST00000394090.2	chrX	138623245:138623348:138630521:138630650:138633220:138633406,138619520:138619545:138630521:138630650:138633220:138633406,	138630522	138630650	138630614	138630614	Nonsense_Mutation	C	T	p.R162X
SKCM	TCGA-FS-A1ZA-06	NSUN6	ENST00000377304.4	chr10	18837040:18837166:18840751:18840900:18874877:18875022,	18840752	18840900	18840781	18840781	Nonsense_Mutation	G	A	p.Q348X
SKCM	TCGA-FS-A1ZA-06	OGDHL	ENST00000432695.1,ENST00000374103.4,ENST00000419399.1	chr10	50953458:50953542:50953843:50954023:50954795:50954879,	50953844	50954023	50953880	50953880	Nonsense_Mutation	C	T	p.W423X
SKCM	TCGA-FS-A1ZA-06	GFAP	ENST00000435360.2,ENST00000588640.1,ENST00000586793.1,ENST00000253408.5	chr17	42987986:42988026:42988603:42988824:42989039:42989164,	42988604	42988824	42988759	42988759	Nonsense_Mutation	A	C	p.Y324X
SKCM	TCGA-FS-A1ZA-06	MR1	ENST00000438435.2,ENST00000282990.6	chr1	181019281:181019422:181022708:181022813:181024360:181024420,	181022709	181022813	181022797	181022797	Nonsense_Mutation	G	A	p.W323X
SKCM	TCGA-FS-A1ZA-06	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000396821.3,ENST00000432525.1,ENST00000381633.3	chr22	38890890:38891051:38891800:38891942:38894089:38894155,	38891801	38891942	38891816	38891816	Nonsense_Mutation	G	A	p.R289X
SKCM	TCGA-FS-A1ZA-06	PARM1	ENST00000307428.7	chr4	75858325:75858580:75937634:75938360:75959092:75959171,	75937635	75938360	75937638	75937638	Nonsense_Mutation	G	A	p.W16X
SKCM	TCGA-FS-A1ZA-06	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680362	18680362	Nonsense_Mutation	C	T	p.Q397X
SKCM	TCGA-EB-A5UL-06	MYO1A	ENST00000433964.1,ENST00000442789.2,ENST00000300119.3	chr12	57441446:57441505:57441772:57441888:57441993:57442121,	57441773	57441888	57441807	57441807	Nonsense_Mutation	G	A	p.Q66X
SKCM	TCGA-EB-A5UL-06	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85497781:85497855:85500299:85500393:85515474:85515654,	85500300	85500393	85500321	85500321	Nonsense_Mutation	G	A	p.W1102X
SKCM	TCGA-EB-A5UL-06	TPM1	ENST00000404484.4,ENST00000558544.1,ENST00000317516.7,ENST00000288398.6,ENST00000560959.1,ENST00000558347.1,ENST00000560615.1,ENST00000358278.3,ENST00000559397.1	chr15	63353067:63353138:63353396:63353472:63353911:63353987,63353067:63353138:63353396:63353472:63354413:63354476,	63353397	63353472	63353404	63353404	Nonsense_Mutation	C	T	p.R191X
SKCM	TCGA-EB-A5UL-06	CERS2	ENST00000345896.4,ENST00000421609.1,ENST00000368949.4,ENST00000361419.5,ENST00000368954.5,ENST00000271688.6,ENST00000558062.1,ENST00000559020.1	chr1	150940295:150940353:150940558:150940677:150940870:150940954,	150940559	150940677	150940569	150940569	Nonsense_Mutation	G	A	p.R134X
SKCM	TCGA-EB-A5UL-06	CERS2	ENST00000561294.1	chr1	150940295:150940353:150940558:150940650:150940870:150940954,	150940559	150940650	150940569	150940569	Nonsense_Mutation	G	A	p.R134X
SKCM	TCGA-EB-A5UL-06	EMID1	ENST00000430127.1	chr22	29610914:29611028:29611515:29611619:29621121:29621205,29610914:29611028:29611515:29611619:29622478:29622540,	29611516	29611619	29611579	29611579	Nonsense_Mutation	G	A	p.W93X
SKCM	TCGA-EB-A5UL-06	DDO	ENST00000368924.3	chr6	110712973:110714545:110725976:110726153:110729536:110729645,	110725977	110726153	110726086	110726086	Nonsense_Mutation	G	A	p.R145X
SKCM	TCGA-BF-A3DL-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
SKCM	TCGA-BF-A3DL-01	L3MBTL1	ENST00000427442.2,ENST00000422861.1,ENST00000418998.1,ENST00000444063.1,ENST00000373133.1,ENST00000373134.1,ENST00000373135.3	chr20	42164736:42164934:42165048:42165098:42168790:42168948,	42165049	42165098	42165071	42165071	Nonsense_Mutation	C	T	p.R694X
SKCM	TCGA-BF-A3DL-01	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828152	121828152	Nonsense_Mutation	G	A	p.W166X
SKCM	TCGA-BF-A3DL-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345787	122345787	Nonsense_Mutation	C	T	p.Q215X
SKCM	TCGA-BF-A3DL-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70517037:70517167:70533269:70533486:70536176:70536432,	70533270	70533486	70533306	70533306	Nonsense_Mutation	C	T	p.R472X
SKCM	TCGA-BF-A3DL-01	MAPKAP1	ENST00000473837.1,ENST00000373511.2,ENST00000373503.3,ENST00000394063.1,ENST00000265960.3,ENST00000373498.1	chr9	128246721:128246862:128305337:128305447:128321911:128322088,128268588:128268696:128305337:128305447:128321911:128322088,	128305338	128305447	128305419	128305419	Nonsense_Mutation	G	A	p.Q101X
SKCM	TCGA-EE-A2M5-06	PRDM10	ENST00000533431.1,ENST00000304538.6,ENST00000528746.1,ENST00000360871.3	chr11	129793142:129793298:129794776:129795124:129800910:129801153,	129794777	129795124	129795112	129795112	Nonsense_Mutation	G	A	p.Q519X
SKCM	TCGA-EE-A2M5-06	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28624231:28624359:28626681:28626811:28631483:28631599,	28626682	28626811	28626773	28626773	Nonsense_Mutation	T	A	p.K175X
SKCM	TCGA-EE-A2M5-06	EHD4	ENST00000569223.1	chr15	42235264:42235362:42245961:42246138:42264456:42264750,	42245962	42246138	42245963	42245963	Nonsense_Mutation	G	A	p.R138X
SKCM	TCGA-EE-A2M5-06	AQP4	ENST00000383168.4,ENST00000440832.3,ENST00000583022.1,ENST00000581374.1	chr18	24436252:24436453:24440735:24440816:24441094:24441259,	24440736	24440816	24440749	24440749	Nonsense_Mutation	C	T	p.W227X
SKCM	TCGA-EE-A2M5-06	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165465	50165465	Nonsense_Mutation	C	T	p.W95X
SKCM	TCGA-EE-A2M5-06	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165465	50165465	Nonsense_Mutation	C	T	p.W95X
SKCM	TCGA-EE-A2M5-06	GRIK3	ENST00000373091.3,ENST00000373093.4	chr1	37337788:37337970:37346234:37346492:37356520:37356697,	37346235	37346492	37346270	37346270	Nonsense_Mutation	C	T	p.W172X
SKCM	TCGA-EE-A2M5-06	SEC24D	ENST00000419654.2,ENST00000511481.1,ENST00000379735.5,ENST00000514561.1,ENST00000280551.6,ENST00000505134.1,ENST00000429811.2	chr4	119662095:119662192:119665142:119665313:119666098:119666215,	119665143	119665313	119665155	119665155	Nonsense_Mutation	G	T	p.Y661X
SKCM	TCGA-EE-A2M5-06	ZPBP	ENST00000046087.2	chr7	50097584:50097737:50121369:50121495:50129224:50129305,	50121370	50121495	50121403	50121403	Nonsense_Mutation	G	A	p.Q101X
SKCM	TCGA-EE-A2M5-06	RAD21	ENST00000518055.1,ENST00000523986.1,ENST00000297338.2	chr8	117859572:117859930:117861184:117861268:117862856:117863000,	117861185	117861268	117861238	117861238	Nonsense_Mutation	G	A	p.Q551X
SKCM	TCGA-BF-A1PZ-01	C1orf194	ENST00000369949.4,ENST00000369942.2	chr1	109649628:109649744:109650542:109650659:109656254:109656457,	109650543	109650659	109650609	109650609	Nonsense_Mutation	C	T	p.W32X
SKCM	TCGA-BF-A1PZ-01	C1orf194	ENST00000369949.4,ENST00000369942.2	chr1	109649628:109649744:109650542:109650659:109656254:109656457,	109650543	109650659	109650610	109650610	Nonsense_Mutation	C	T	p.W32X
SKCM	TCGA-BF-A1PZ-01	KIF16B	ENST00000408042.1,ENST00000355755.3,ENST00000378003.2,ENST00000354981.2	chr20	16352309:16352406:16354901:16355054:16359449:16360808,	16354902	16355054	16355038	16355038	Nonsense_Mutation	G	A	p.Q1072X
SKCM	TCGA-BF-A1PZ-01	HMBOX1	ENST00000560599.1,ENST00000558662.1,ENST00000518080.1,ENST00000519047.1,ENST00000403668.2,ENST00000397358.3,ENST00000523613.1,ENST00000444075.1,ENST00000524238.1,ENST00000521516.1,ENST00000287701.10,ENST00000355231.5	chr8	28827952:28828036:28837587:28837673:28866588:28866699,	28837588	28837673	28837649	28837649	Nonsense_Mutation	C	T	p.Q188X
SKCM	TCGA-FS-A4FD-06	SLC41A2	ENST00000258538.3	chr12	105280070:105280217:105282810:105282955:105289051:105289123,	105282811	105282955	105282900	105282900	Nonsense_Mutation	C	T	p.W264X
SKCM	TCGA-FS-A4FD-06	SPOCK1	ENST00000394945.1,ENST00000282223.7	chr5	136324241:136324332:136328172:136328289:136403403:136403518,	136328173	136328289	136328179	136328179	Nonsense_Mutation	G	A	p.Q234X
SKCM	TCGA-FS-A4FD-06	DGKI	ENST00000453654.2,ENST00000446122.1,ENST00000424189.2,ENST00000288490.5	chr7	137270006:137270092:137271842:137271956:137282592:137282653,	137271843	137271956	137271863	137271863	Nonsense_Mutation	G	A	p.R469X
SKCM	TCGA-FS-A4FD-06	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380875.3	chr9	14801649:14801872:14804953:14805150:14806658:14806844,	14804954	14805150	14805142	14805142	Nonsense_Mutation	G	A	p.Q1095X
SKCM	TCGA-FS-A4FD-06	LAMC3	ENST00000361069.4	chr9	133932315:133932534:133936421:133936610:133942346:133942592,	133936422	133936610	133936604	133936604	Nonsense_Mutation	C	T	p.Q781X
SKCM	TCGA-FS-A4F4-06	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204150334:204150455:204154487:204154599:204156984:204157049,	204154488	204154599	204154579	204154579	Nonsense_Mutation	C	T	p.R355X
SKCM	TCGA-FS-A4F4-06	PLA2G7	ENST00000538237.1,ENST00000541026.1,ENST00000274793.7,ENST00000537365.1	chr6	46678281:46678395:46679232:46679356:46680005:46680074,	46679233	46679356	46679259	46679259	Nonsense_Mutation	C	A	p.E213X
SKCM	TCGA-GN-A26C-01	CCDC83	ENST00000526729.1,ENST00000376067.1	chr11	85584273:85584338:85593555:85593718:85606335:85606427,	85593556	85593718	85593684	85593684	Nonsense_Mutation	G	A	p.W103X
SKCM	TCGA-GN-A26C-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317X
SKCM	TCGA-GN-A26C-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93712394:93712511:93720027:93720171:93721891:93722095,	93720028	93720171	93720073	93720073	Nonsense_Mutation	C	T	p.R1082X
SKCM	TCGA-GN-A26C-01	TNR	ENST00000422274.2	chr1	175362915:175363031:175365679:175365943:175372275:175372752,175362915:175363031:175365679:175365943:175375351:175375500,	175365680	175365943	175365882	175365882	Nonsense_Mutation	C	T	p.W346X
SKCM	TCGA-GN-A26C-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000486937.1,ENST00000291688.1	chr21	47676702:47676900:47678852:47679005:47680706:47680820,	47678853	47679005	47678887	47678887	Nonsense_Mutation	G	A	p.Q1234X
SKCM	TCGA-GN-A26C-01	FAM118A	ENST00000441876.2,ENST00000405548.3,ENST00000216214.3,ENST00000487732.1	chr22	45726483:45726612:45728305:45728591:45731230:45731263,	45728306	45728591	45728384	45728384	Nonsense_Mutation	C	T	p.Q244X
SKCM	TCGA-GN-A26C-01	NR4A2	ENST00000409572.1,ENST00000539077.1,ENST00000426264.1,ENST00000339562.4	chr2	157182255:157182512:157182661:157182840:157183229:157183432,	157182662	157182840	157182757	157182757	Nonsense_Mutation	C	T	p.W482X
SKCM	TCGA-GN-A26C-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749422	196749422	Nonsense_Mutation	G	A	p.R1884X
SKCM	TCGA-D3-A5GO-06	NSUN6	ENST00000377304.4	chr10	18840751:18840900:18874877:18875022:18885136:18885256,	18874878	18875022	18874971	18874971	Nonsense_Mutation	G	A	p.Q277X
SKCM	TCGA-D3-A5GO-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830330	61830330	Nonsense_Mutation	G	A	p.Q3437X
SKCM	TCGA-D3-A5GO-06	OSBP	ENST00000263847.1	chr11	59348923:59349027:59361076:59361197:59361482:59361728,	59361077	59361197	59361107	59361107	Nonsense_Mutation	G	A	p.R550X
SKCM	TCGA-D3-A5GO-06	SCAF1	ENST00000598359.1	chr19	50145916:50145963:50148277:50148391:50148610:50148668,	50148278	50148391	50148305	50148305	Nonsense_Mutation	C	T	p.R8X
SKCM	TCGA-D3-A5GO-06	HAO2	ENST00000325945.3,ENST00000361035.4	chr1	119927473:119927676:119929244:119929454:119934732:119934891,	119929245	119929454	119929329	119929329	Nonsense_Mutation	C	T	p.R216X
SKCM	TCGA-D3-A5GO-06	PLD5	ENST00000442594.2,ENST00000366545.4	chr1	242428663:242428750:242451663:242451832:242511407:242511544,242428663:242428750:242451663:242451832:242511400:242511544,	242451664	242451832	242451697	242451697	Nonsense_Mutation	C	T	p.W92X
SKCM	TCGA-D3-A5GO-06	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24460497:24460650:24462937:24463132:24466750:24466841,	24462938	24463132	24463103	24463103	Nonsense_Mutation	G	T	p.E735X
SKCM	TCGA-D3-A5GO-06	SLC16A14	ENST00000295190.4	chr2	230899697:230902247:230910460:230911438:230914476:230914620,	230910461	230911438	230911259	230911259	Nonsense_Mutation	G	A	p.Q195X
SKCM	TCGA-D3-A5GO-06	OCIAD2	ENST00000514576.1,ENST00000273860.4,ENST00000510159.1	chr4	48901845:48901942:48906500:48906628:48908674:48908744,	48906501	48906628	48906539	48906539	Nonsense_Mutation	G	A	p.Q10X
SKCM	TCGA-D3-A5GO-06	OCIAD2	ENST00000381464.2	chr4	48901845:48901942:48906500:48906651:48908674:48908744,	48906501	48906651	48906539	48906539	Nonsense_Mutation	G	A	p.Q10X
SKCM	TCGA-D3-A5GO-06	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275901	114275901	Nonsense_Mutation	C	T	p.Q2043X
SKCM	TCGA-D3-A5GO-06	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169354160:169354266:169362487:169362643:169369788:169369930,	169362488	169362643	169362491	169362491	Nonsense_Mutation	G	A	p.Q431X
SKCM	TCGA-D3-A5GO-06	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133920430:133920585:133923621:133923778:133925291:133925480,	133923622	133923778	133923722	133923722	Nonsense_Mutation	G	A	p.W1368X
SKCM	TCGA-DA-A1I8-06	EIF2D	ENST00000367114.3,ENST00000468891.1,ENST00000484492.1,ENST00000271764.2	chr1	206769066:206769187:206770449:206770545:206772356:206772446,	206770450	206770545	206770467	206770467	Nonsense_Mutation	C	T	p.W457X
SKCM	TCGA-DA-A1I8-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903556	5903556	Nonsense_Mutation	C	T	p.Q256X
SKCM	TCGA-DA-A1I8-06	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000342992.6,ENST00000460472.2	chr2	179390715:179392034:179392172:179392475:179393000:179393154,	179392173	179392475	179392293	179392293	Nonsense_Mutation	G	A	p.Q35854X
SKCM	TCGA-RP-A690-06	TEAD4	ENST00000543035.1,ENST00000359864.2,ENST00000358409.2	chr12	3069113:3069206:3103903:3104158:3120169:3120234,	3103904	3104158	3103971	3103971	Nonsense_Mutation	G	A	p.W13X
SKCM	TCGA-FS-A4F0-06	WDR72	ENST00000360509.5	chr15	54014998:54015105:54025193:54025358:54051829:54051859,	54025194	54025358	54025314	54025314	Nonsense_Mutation	C	T	p.W11X
SKCM	TCGA-FS-A4F0-06	PEX14	ENST00000356607.4,ENST00000538836.1	chr1	10683075:10683178:10684396:10684494:10687328:10687420,	10684397	10684494	10684462	10684462	Nonsense_Mutation	C	T	p.Q185X
SKCM	TCGA-FS-A4F0-06	TARBP1	ENST00000040877.1	chr1	234563321:234563512:234564881:234565070:234565161:234565423,	234564882	234565070	234564992	234564992	Nonsense_Mutation	G	A	p.Q984X
SKCM	TCGA-FS-A4F0-06	TTC3	ENST00000438055.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38524192:38524329:38525250:38525577:38528956:38529208,	38525251	38525577	38525559	38525559	Nonsense_Mutation	C	T	p.Q908X
SKCM	TCGA-FS-A4F0-06	NQO2	ENST00000338130.2,ENST00000380455.4,ENST00000380430.1	chr6	3012797:3012908:3015763:3015877:3017117:3017219,	3015764	3015877	3015827	3015827	Nonsense_Mutation	C	T	p.Q123X
SKCM	TCGA-FS-A4F0-06	NUDT2	ENST00000346365.4,ENST00000379155.5,ENST00000379158.2	chr9	34338710:34338845:34339021:34339164:34343121:34343709,	34339022	34339164	34339151	34339151	Nonsense_Mutation	G	A	p.W38X
SKCM	TCGA-EB-A430-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373722	104373722	Nonsense_Mutation	A	T	p.K94X
SKCM	TCGA-EB-A430-01	SLC22A17	ENST00000397267.1,ENST00000206544.8,ENST00000397260.3,ENST00000354772.3	chr14	23817099:23817205:23817369:23817515:23817714:23817755,	23817370	23817515	23817427	23817427	Nonsense_Mutation	C	A	p.E261X
SKCM	TCGA-EB-A430-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485075	35485075	Nonsense_Mutation	G	A	p.Q103X
SKCM	TCGA-EB-A430-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	469321:469422:470423:470525:472897:473008,	470424	470525	470430	470430	Nonsense_Mutation	A	C	p.Y239X
SKCM	TCGA-FS-A1ZD-06	ALKBH2	ENST00000429722.2,ENST00000343075.3	chr12	109526026:109526317:109527813:109528012:109530311:109530557,	109527814	109528012	109527892	109527892	Nonsense_Mutation	C	T	p.W134X
SKCM	TCGA-FS-A1ZD-06	NPR1	ENST00000368680.3	chr1	153662759:153662858:153665581:153665673:153665827:153666468,	153665582	153665673	153665653	153665653	Nonsense_Mutation	C	T	p.R1035X
SKCM	TCGA-FW-A5DX-01	GALNT14	ENST00000424136.1	chr2	31189142:31189168:31215703:31215873:31360823:31360887,31189142:31189168:31215703:31215873:31337608:31337693,31189142:31189168:31215703:31215873:31355495:31355578,	31215704	31215873	31215756	31215756	Nonsense_Mutation	C	A	p.E83X
SKCM	TCGA-FW-A5DX-01	PER2	ENST00000440245.1,ENST00000254657.3	chr2	239170833:239170985:239171592:239171699:239174152:239174231,	239171593	239171699	239171671	239171671	Nonsense_Mutation	G	A	p.Q359X
SKCM	TCGA-FW-A5DX-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623733	623733	Nonsense_Mutation	C	A	p.E207X
SKCM	TCGA-DA-A1HV-06	MPPED2	ENST00000448418.2,ENST00000358117.5,ENST00000526437.1	chr11	30435774:30435888:30439064:30439180:30516842:30517068,	30439065	30439180	30439117	30439117	Nonsense_Mutation	C	T	p.W200X
SKCM	TCGA-DA-A1HV-06	AMHR2	ENST00000550311.1	chr12	53823236:53823409:53823614:53823762:53823929:53824066,53823236:53823409:53823614:53823762:53823933:53824066,	53823615	53823762	53823728	53823728	Nonsense_Mutation	G	A	p.W418X
SKCM	TCGA-DA-A1HV-06	SLC41A2	ENST00000258538.3	chr12	105280070:105280217:105282810:105282955:105289051:105289123,	105282811	105282955	105282952	105282952	Nonsense_Mutation	G	A	p.Q247X
SKCM	TCGA-DA-A1HV-06	ADAMTS18	ENST00000282849.5	chr16	77356232:77356363:77359762:77359935:77369652:77369801,	77359763	77359935	77359786	77359786	Nonsense_Mutation	C	T	p.W670X
SKCM	TCGA-DA-A1HV-06	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54096512:54096675:54101475:54101631:54102763:54102892,	54101476	54101631	54101580	54101580	Nonsense_Mutation	G	A	p.Q1666X
SKCM	TCGA-DA-A1HV-06	C6orf118	ENST00000230301.8	chr6	165713852:165713975:165715057:165715785:165723050:165723096,	165715058	165715785	165715408	165715408	Nonsense_Mutation	G	A	p.Q135X
SKCM	TCGA-DA-A1HV-06	RARRES2	ENST00000467793.1,ENST00000466675.1,ENST00000482669.1,ENST00000223271.3	chr7	150036074:150036170:150037188:150037293:150037524:150037566,	150037189	150037293	150037222	150037222	Nonsense_Mutation	C	T	p.W82X
SKCM	TCGA-DA-A1HV-06	ARMC1	ENST00000523384.1	chr8	66534497:66534589:66539450:66539668:66546232:66546406,66525572:66525668:66539450:66539668:66546232:66546406,	66539451	66539668	66539522	66539522	Nonsense_Mutation	G	A	p.Q38X
SKCM	TCGA-EE-A3AD-06	SLC12A3	ENST00000563236.1,ENST00000262502.5,ENST00000566786.1,ENST00000438926.2	chr16	56916377:56916409:56917960:56918116:56919176:56919276,	56917961	56918116	56918052	56918052	Nonsense_Mutation	G	A	p.W587X
SKCM	TCGA-EE-A3AD-06	LARP1B	ENST00000326639.6,ENST00000503725.1,ENST00000264584.5,ENST00000507259.1,ENST00000354456.3,ENST00000506199.1	chr4	129121748:129121820:129127582:129127692:129128410:129128538,	129127583	129127692	129127653	129127653	Nonsense_Mutation	C	T	p.Q794X
SKCM	TCGA-EE-A3J7-06	SGMS1	ENST00000429490.1,ENST00000361781.2	chr10	52066901:52067081:52067741:52067908:52071021:52071175,	52067742	52067908	52067877	52067877	Nonsense_Mutation	C	T	p.W309X
SKCM	TCGA-EE-A3J7-06	ANO2	ENST00000545860.1,ENST00000327087.8,ENST00000542326.1,ENST00000546188.1,ENST00000356134.5,ENST00000538154.1	chr12	5744478:5744513:5756892:5756967:5841685:5841796,	5756893	5756967	5756944	5756944	Nonsense_Mutation	C	T	p.W523X
SKCM	TCGA-EE-A3J7-06	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264455	75264455	Nonsense_Mutation	C	T	p.Q819X
SKCM	TCGA-EE-A3J7-06	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000483030.1,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115263198:115263338:115266503:115266623:115267841:115267954,	115266504	115266623	115266543	115266543	Nonsense_Mutation	G	A	p.Q581X
SKCM	TCGA-EE-A3J7-06	XPR1	ENST00000367590.4,ENST00000367589.3	chr1	180651495:180651547:180756888:180756990:180772523:180772747,	180756889	180756990	180756945	180756945	Nonsense_Mutation	C	T	p.Q60X
SKCM	TCGA-EE-A3J7-06	LAMB3	ENST00000415782.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209811878:209811993:209823308:209823463:209824261:209824321,	209823309	209823463	209823368	209823368	Nonsense_Mutation	G	A	p.R42X
SKCM	TCGA-EE-A3J7-06	SFXN5	ENST00000272433.2,ENST00000463277.1,ENST00000474528.1	chr2	73198698:73198814:73215386:73215477:73226077:73226143,	73215387	73215477	73215456	73215456	Nonsense_Mutation	G	A	p.Q186X
SKCM	TCGA-EE-A3J7-06	SPOPL	ENST00000420679.1,ENST00000280098.4	chr2	139307726:139307864:139308052:139308174:139308543:139308624,139307726:139307864:139308052:139308174:139308472:139308624,	139308053	139308174	139308107	139308107	Nonsense_Mutation	C	T	p.R45X
SKCM	TCGA-EE-A3J7-06	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231825	230231825	Nonsense_Mutation	C	T	p.W622X
SKCM	TCGA-EE-A3J7-06	LRRC31	ENST00000316428.5,ENST00000264676.5,ENST00000523069.1	chr3	169569406:169569574:169572600:169572768:169574123:169574291,	169572601	169572768	169572738	169572738	Nonsense_Mutation	C	T	p.L285X
SKCM	TCGA-EE-A3J7-06	BLVRA	ENST00000265523.4,ENST00000402924.1	chr7	43840063:43840171:43843274:43843446:43846575:43846938,	43843275	43843446	43843289	43843289	Nonsense_Mutation	G	T	p.E159X
SKCM	TCGA-EE-A3J7-06	ADAMDEC1	ENST00000538205.1,ENST00000520193.1,ENST00000522298.1,ENST00000256412.4	chr8	24255992:24256064:24256386:24256553:24256905:24256987,	24256387	24256553	24256408	24256408	Nonsense_Mutation	C	T	p.Q183X
SKCM	TCGA-EE-A3J7-06	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52339205:52339318:52359563:52359722:52361561:52361678,	52359564	52359722	52359642	52359642	Nonsense_Mutation	G	A	p.Q483X
SKCM	TCGA-EE-A3J7-06	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103269859:103269945:103271212:103271357:103273373:103273487,	103271213	103271357	103271215	103271215	Nonsense_Mutation	G	T	p.S2700X
SKCM	TCGA-EE-A2MT-06	UTP20	ENST00000261637.4	chr12	101761637:101761754:101763498:101763669:101764209:101764341,	101763499	101763669	101763530	101763530	Nonsense_Mutation	G	A	p.W2139X
SKCM	TCGA-EE-A2MT-06	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014234	28014234	Nonsense_Mutation	G	A	p.Q118X
SKCM	TCGA-EE-A2MT-06	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42046634:42046765:42049985:42050037:42052520:42052727,	42049986	42050037	42050032	42050032	Nonsense_Mutation	C	T	p.R2396X
SKCM	TCGA-EE-A2MT-06	CDH16	ENST00000394055.3	chr16	66943888:66943996:66944162:66944339:66945084:66945218,	66944163	66944339	66944308	66944308	Nonsense_Mutation	G	T	p.Y577X
SKCM	TCGA-EE-A2MT-06	CDH16	ENST00000568698.1,ENST00000570262.1,ENST00000568632.1,ENST00000299752.4	chr16	66943888:66943996:66944162:66944405:66945084:66945218,	66944163	66944405	66944308	66944308	Nonsense_Mutation	G	T	p.Y577X
SKCM	TCGA-EE-A2MT-06	SELE	ENST00000367774.1,ENST00000367782.4,ENST00000367777.1,ENST00000367776.1,ENST00000333360.7,ENST00000367779.4,ENST00000367781.4	chr1	169698628:169698814:169699572:169699758:169700975:169701083,	169699573	169699758	169699598	169699598	Nonsense_Mutation	C	T	p.W230X
SKCM	TCGA-EE-A2MT-06	SELE	ENST00000367774.1,ENST00000367782.4,ENST00000367777.1,ENST00000367776.1,ENST00000333360.7,ENST00000367779.4,ENST00000367781.4	chr1	169698628:169698814:169699572:169699758:169700975:169701083,	169699573	169699758	169699599	169699599	Nonsense_Mutation	C	T	p.W230X
SKCM	TCGA-EE-A2MT-06	ENPP2	ENST00000259486.6	chr8	120605991:120606100:120608086:120608242:120612917:120612990,	120608087	120608242	120608182	120608182	Nonsense_Mutation	T	A	p.K345X
SKCM	TCGA-D9-A1JW-06	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000526707.1,ENST00000524446.1	chr11	9167259:9167362:9168576:9168698:9171627:9171720,	9168577	9168698	9168652	9168652	Nonsense_Mutation	C	A	p.E928X
SKCM	TCGA-D9-A1JW-06	CCDC77	ENST00000239830.4,ENST00000540344.1,ENST00000543504.1,ENST00000422000.1,ENST00000540180.1,ENST00000412006.2	chr12	537934:538031:539829:539902:541031:541120,	539830	539902	539842	539842	Nonsense_Mutation	C	T	p.Q143X
SKCM	TCGA-D9-A1JW-06	EXD2	ENST00000409018.3,ENST00000449989.1,ENST00000312994.5,ENST00000409675.1,ENST00000409014.1,ENST00000409949.1,ENST00000409242.1	chr14	69697188:69697315:69701416:69701748:69702762:69702869,	69701417	69701748	69701576	69701576	Nonsense_Mutation	C	T	p.R293X
SKCM	TCGA-D9-A1JW-06	EXD2	ENST00000492815.1	chr14	69697188:69697315:69701490:69701748:69702762:69702869,	69701491	69701748	69701576	69701576	Nonsense_Mutation	C	T	p.R293X
SKCM	TCGA-D9-A1JW-06	REG1A	ENST00000233735.1	chr2	79349164:79349251:79349966:79350078:79350273:79350545,	79349967	79350078	79349984	79349984	Nonsense_Mutation	G	A	p.W113X
SKCM	TCGA-D9-A1JW-06	SCFD2	ENST00000388940.4,ENST00000401642.3	chr4	54011499:54011749:54139992:54140168:54179802:54179930,	54139993	54140168	54140030	54140030	Nonsense_Mutation	C	T	p.W425X
SKCM	TCGA-D9-A1JW-06	TRPM3	ENST00000377105.1,ENST00000357533.2,ENST00000408909.2,ENST00000396280.5	chr9	73240106:73240247:73240397:73240433:73250126:73250177,	73240398	73240433	73240410	73240410	Nonsense_Mutation	C	T	p.W399X
SKCM	TCGA-D9-A1JW-06	CACNA1B	ENST00000277551.2,ENST00000371357.1,ENST00000371363.1,ENST00000371372.1,ENST00000277549.5,ENST00000371355.4	chr9	140972565:140972710:140990935:140991063:140997162:140997259,	140990936	140991063	140991040	140991040	Nonsense_Mutation	G	A	p.W1733X
SKCM	TCGA-D9-A149-06	CHRNA3	ENST00000559658.1	chr15	78886271:78886353:78888881:78889074:78893594:78894606,	78888882	78889074	78889060	78889060	Nonsense_Mutation	C	T	p.W468X
SKCM	TCGA-D9-A149-06	CCDC74B	ENST00000409943.3,ENST00000392984.3,ENST00000310463.6	chr2	130897595:130897669:130897751:130897944:130898730:130898869,	130897752	130897944	130897892	130897892	Nonsense_Mutation	G	A	p.Q246X
SKCM	TCGA-EE-A29E-06	DCN	ENST00000052754.5,ENST00000393155.1,ENST00000552962.1	chr12	91550851:91550965:91552072:91552286:91558381:91558494,	91552073	91552286	91552088	91552088	Nonsense_Mutation	G	A	p.Q175X
SKCM	TCGA-EE-A29E-06	SMOC1	ENST00000361956.3,ENST00000381280.4	chr14	70459133:70459190:70461116:70461197:70477470:70477663,	70461117	70461197	70461138	70461138	Nonsense_Mutation	G	A	p.W202X
SKCM	TCGA-EE-A29E-06	JDP2	ENST00000267569.5,ENST00000437176.1,ENST00000559060.1,ENST00000419727.2,ENST00000435893.2	chr14	75904600:75904824:75928128:75928233:75935992:75936087,	75928129	75928233	75928189	75928189	Nonsense_Mutation	C	T	p.R88X
SKCM	TCGA-EE-A29E-06	RDH13	ENST00000592573.1,ENST00000415061.3,ENST00000291892.6,ENST00000396247.3	chr19	55560026:55560131:55568020:55568176:55570524:55570542,	55568021	55568176	55568048	55568048	Nonsense_Mutation	G	A	p.R34X
SKCM	TCGA-EE-A29E-06	WLS	ENST00000370976.3,ENST00000262348.4	chr1	68564155:68564436:68603462:68603616:68610251:68610335,68591656:68592018:68603462:68603616:68610251:68610335,	68603463	68603616	68603577	68603577	Nonsense_Mutation	G	A	p.Q377X
SKCM	TCGA-EE-A29E-06	GABPB2	ENST00000368917.1,ENST00000368918.3,ENST00000462520.1,ENST00000368916.1	chr1	151060945:151060993:151062881:151063049:151065667:151065862,151060665:151060773:151062881:151063049:151065667:151065862,	151062882	151063049	151062912	151062912	Nonsense_Mutation	C	T	p.Q47X
SKCM	TCGA-EE-A29E-06	STX6	ENST00000258301.5	chr1	180959119:180959245:180962498:180962561:180991774:180992005,180959119:180959245:180962498:180962561:180971741:180971836,	180962499	180962561	180962549	180962549	Nonsense_Mutation	G	A	p.Q105X
SKCM	TCGA-EE-A29E-06	VSNL1	ENST00000295156.4	chr2	17721973:17722185:17773336:17773503:17830676:17830827,	17773337	17773503	17773486	17773486	Nonsense_Mutation	C	T	p.Q49X
SKCM	TCGA-EE-A29E-06	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905X
SKCM	TCGA-EE-A29E-06	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905X
SKCM	TCGA-EE-A29E-06	TRPC1	ENST00000476941.1,ENST00000273482.6	chr3	142467099:142467302:142496473:142496605:142499675:142499871,	142496474	142496605	142496493	142496493	Nonsense_Mutation	C	T	p.R184X
SKCM	TCGA-EE-A29E-06	WDR49	ENST00000493061.1	chr3	167240119:167240272:167246839:167247027:167248902:167248977,	167246840	167247027	167246850	167246850	Nonsense_Mutation	C	T	p.W447X
SKCM	TCGA-EE-A29E-06	RNF175	ENST00000513656.1	chr4	154644551:154644610:154649358:154649513:154666820:154666879,154644551:154644610:154649358:154649513:154680948:154681025,154644551:154644610:154649358:154649513:154669796:154669901,154644551:154644610:154649358:154649513:154672589:154672599,	154649359	154649513	154649452	154649452	Nonsense_Mutation	C	T	p.W103X
SKCM	TCGA-EE-A29E-06	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170343468:170343588:170345716:170345863:170346444:170346617,	170345717	170345863	170345783	170345783	Nonsense_Mutation	C	T	p.Q341X
SKCM	TCGA-EE-A29E-06	AOAH	ENST00000535891.1,ENST00000487014.1,ENST00000480201.1,ENST00000495942.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36589044:36589081:36616179:36616262:36633944:36634036,	36616180	36616262	36616230	36616230	Nonsense_Mutation	C	T	p.W324X
SKCM	TCGA-EE-A29E-06	TUSC3	ENST00000509380.1,ENST00000507400.1,ENST00000515859.1,ENST00000510836.1,ENST00000506802.1,ENST00000511783.2,ENST00000382020.4,ENST00000503731.1	chr8	15480588:15480758:15508205:15508323:15517015:15517156,	15508206	15508323	15508318	15508318	Nonsense_Mutation	C	T	p.Q141X
SKCM	TCGA-EE-A29E-06	RNF170	ENST00000319073.4,ENST00000240159.4	chr8	42720608:42720632:42725146:42725255:42729073:42729149,42716887:42716998:42725146:42725255:42729073:42729149,	42725147	42725255	42725192	42725192	Nonsense_Mutation	G	A	p.Q93X
SKCM	TCGA-EE-A2GD-06	SPNS1	ENST00000323081.8,ENST00000565975.1,ENST00000311008.11	chr16	28990725:28990792:28992790:28992936:28993676:28993696,28990725:28990792:28992790:28992936:28993221:28993377,	28992791	28992936	28992876	28992876	Nonsense_Mutation	C	G	p.S228X
SKCM	TCGA-EE-A2GD-06	SPNS1	ENST00000566059.1	chr16	28990725:28990792:28992775:28992936:28993221:28993377,	28992776	28992936	28992876	28992876	Nonsense_Mutation	C	G	p.S228X
SKCM	TCGA-EE-A2GD-06	ABCG5	ENST00000260645.1	chr2	44052027:44052157:44053520:44053660:44055121:44055254,	44053521	44053660	44053607	44053607	Nonsense_Mutation	G	A	p.Q230X
SKCM	TCGA-EE-A2GD-06	ITGB8	ENST00000222573.4,ENST00000537992.1,ENST00000478974.1	chr7	20420288:20420454:20421349:20421508:20431025:20431121,	20421350	20421508	20421377	20421377	Nonsense_Mutation	A	T	p.K277X
SKCM	TCGA-EE-A2MR-06	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000389645.3,ENST00000529307.1,ENST00000530820.1	chr11	34104371:34104424:34104501:34104588:34107610:34107766,	34104502	34104588	34104504	34104504	Nonsense_Mutation	T	G	p.Y294X
SKCM	TCGA-EE-A2MR-06	ALKBH1	ENST00000555100.1	chr14	78141998:78142192:78146222:78146313:78170711:78170795,78141998:78142137:78146222:78146313:78170711:78170795,	78146223	78146313	78146285	78146285	Nonsense_Mutation	G	A	p.R162X
SKCM	TCGA-EE-A2MR-06	ITGAL	ENST00000454514.2,ENST00000562857.1	chr16	30486833:30486901:30490411:30490529:30492759:30492905,	30490412	30490529	30490433	30490433	Nonsense_Mutation	C	T	p.R117X
SKCM	TCGA-EE-A2MR-06	PLXDC1	ENST00000578390.1,ENST00000394318.3,ENST00000394316.2	chr17	37265500:37265644:37295906:37296085:37309176:37309280,37265500:37265644:37295906:37296085:37308798:37308865,37265500:37265644:37295906:37296085:37307614:37307772,	37295907	37296085	37296031	37296031	Nonsense_Mutation	C	T	p.W44X
SKCM	TCGA-EE-A2MR-06	STAT3	ENST00000585517.1,ENST00000264657.5,ENST00000404395.3,ENST00000585360.1,ENST00000588969.1	chr17	40497576:40497675:40498586:40498731:40500406:40500534,	40498587	40498731	40498622	40498622	Nonsense_Mutation	G	A	p.Q80X
SKCM	TCGA-EE-A2MR-06	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680349	6680349	Nonsense_Mutation	C	T	p.R210X
SKCM	TCGA-EE-A2MR-06	NPR1	ENST00000368680.3	chr1	153662759:153662858:153665581:153665673:153665827:153666468,	153665582	153665673	153665653	153665653	Nonsense_Mutation	C	T	p.R1035X
SKCM	TCGA-EE-A2MR-06	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229611384:229611479:229613343:229613507:229619800:229619892,	229613344	229613507	229613413	229613413	Nonsense_Mutation	G	A	p.Q563X
SKCM	TCGA-EE-A2MR-06	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45874751:45875261:45878030:45878183:45891031:45891172,	45878031	45878183	45878181	45878181	Nonsense_Mutation	G	A	p.R542X
SKCM	TCGA-EE-A2MR-06	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000490315.1,ENST00000331029.7,ENST00000360091.3,ENST00000332035.6,ENST00000483629.1,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29692228:29692358:29693816:29693939:29694722:29694791,	29693817	29693939	29693828	29693828	Nonsense_Mutation	C	T	p.Q441X
SKCM	TCGA-EE-A2MR-06	XDH	ENST00000379416.3	chr2	31596738:31596822:31598245:31598420:31599918:31600103,	31598246	31598420	31598275	31598275	Nonsense_Mutation	G	A	p.Q525X
SKCM	TCGA-EE-A2MR-06	ABCG8	ENST00000272286.2	chr2	44071645:44071747:44073293:44073450:44078722:44078961,	44073294	44073450	44073309	44073309	Nonsense_Mutation	C	T	p.Q61X
SKCM	TCGA-EE-A2MR-06	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6	chr2	109102966:109103104:109104154:109104276:109106293:109106470,	109104155	109104276	109104200	109104200	Nonsense_Mutation	C	T	p.R1326X
SKCM	TCGA-EE-A2MR-06	LAMP3	ENST00000466939.1,ENST00000265598.3	chr3	182858325:182858383:182870162:182870291:182871469:182872179,	182870163	182870291	182870195	182870195	Nonsense_Mutation	G	A	p.Q286X
SKCM	TCGA-EE-A2MR-06	PACRG	ENST00000366888.2,ENST00000337019.3,ENST00000366889.2	chr6	163149191:163149423:163235178:163235313:163483181:163483353,	163235179	163235313	163235239	163235239	Nonsense_Mutation	C	T	p.R73X
SKCM	TCGA-EE-A2MR-06	SUN1	ENST00000471349.1,ENST00000456758.2,ENST00000493681.1,ENST00000413171.2,ENST00000340926.3	chr7	882842:882869:882977:883157:888054:888058,	882978	883157	883151	883151	Nonsense_Mutation	C	T	p.Q218X
SKCM	TCGA-EB-A3Y6-01	TRDMT1	ENST00000495022.1,ENST00000377799.3,ENST00000354631.3,ENST00000313936.10,ENST00000452380.2,ENST00000412821.3,ENST00000351358.4,ENST00000377766.5,ENST00000457442.2,ENST00000358282.7	chr10	17199442:17199783:17201144:17201228:17202303:17202373,	17201145	17201228	17201180	17201180	Nonsense_Mutation	G	A	p.Q170X
SKCM	TCGA-EB-A3Y6-01	BEST1	ENST00000378042.3	chr11	61726969:61727050:61727363:61727515:61729726:61729843,61725617:61725770:61727363:61727515:61729726:61729843,	61727364	61727515	61727429	61727429	Nonsense_Mutation	G	A	p.W338X
SKCM	TCGA-EB-A3Y6-01	HMGCS2	ENST00000369406.3,ENST00000544913.2	chr1	120295171:120295297:120295902:120296009:120298049:120298220,	120295903	120296009	120295927	120295927	Nonsense_Mutation	G	A	p.R382X
SKCM	TCGA-EB-A3Y6-01	NINL	ENST00000278886.6	chr20	25450626:25450731:25456678:25457725:25459558:25459663,	25456679	25457725	25456969	25456969	Nonsense_Mutation	C	T	p.W986X
SKCM	TCGA-EB-A3Y6-01	GRM7	ENST00000357716.4,ENST00000389336.4,ENST00000440923.3,ENST00000445087.1,ENST00000402647.2,ENST00000486284.1,ENST00000389335.3,ENST00000403881.1,ENST00000467425.1,ENST00000463676.2	chr3	7456709:7456850:7494293:7494494:7503269:7503409,	7494294	7494494	7494344	7494344	Nonsense_Mutation	C	T	p.Q409X
SKCM	TCGA-EB-A3Y6-01	ADCY5	ENST00000466617.1,ENST00000462833.1,ENST00000309879.5,ENST00000483566.1,ENST00000491190.1	chr3	123049786:123049863:123051410:123051522:123066628:123066750,	123051411	123051522	123051503	123051503	Nonsense_Mutation	C	A	p.E476X
SKCM	TCGA-EB-A3Y6-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266848	6266848	Nonsense_Mutation	G	A	p.R172X
SKCM	TCGA-EB-A44O-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357541	50357541	Nonsense_Mutation	A	C	p.L467X
SKCM	TCGA-EB-A44O-01	CARD14	ENST00000570421.1,ENST00000573754.1,ENST00000344227.2,ENST00000573882.1,ENST00000392434.2,ENST00000571450.1,ENST00000571861.1	chr17	78162175:78162343:78163551:78163671:78164572:78164698,	78163552	78163671	78163600	78163600	Nonsense_Mutation	C	T	p.R61X
SKCM	TCGA-EB-A44O-01	EWSR1	ENST00000332035.6,ENST00000455726.1	chr22	29674119:29674205:29682911:29683123:29684594:29684668,	29682912	29683123	29683075	29683075	Nonsense_Mutation	C	T	p.Q249X
SKCM	TCGA-EB-A44O-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677048	73677048	Nonsense_Mutation	C	T	p.Q1131X
SKCM	TCGA-EB-A44O-01	VIL1	ENST00000454069.1	chr2	219288999:219289074:219290337:219290522:219292687:219292796,	219290338	219290522	219290485	219290485	Nonsense_Mutation	C	T	p.Q100X
SKCM	TCGA-EB-A44O-01	VIL1	ENST00000440053.1,ENST00000248444.5	chr2	219288999:219289074:219290337:219290534:219292687:219292796,	219290338	219290534	219290485	219290485	Nonsense_Mutation	C	T	p.Q100X
SKCM	TCGA-EB-A44O-01	SEPT2	ENST00000360051.3,ENST00000391973.2,ENST00000482304.1,ENST00000441533.1,ENST00000428524.1,ENST00000401990.1,ENST00000457335.1,ENST00000402092.2,ENST00000473479.1,ENST00000436795.1,ENST00000437066.1,ENST00000391971.2,ENST00000420786.1,ENST00000467971.1,ENST00000475474.1,ENST00000366210.2,ENST00000434955.1,ENST00000449239.1,ENST00000445030.1	chr2	242254861:242255025:242265407:242265528:242274540:242274561,242255373:242255397:242265407:242265528:242274540:242274561,242263630:242263656:242265407:242265528:242274540:242274561,	242265408	242265528	242265483	242265483	Nonsense_Mutation	C	T	p.R29X
SKCM	TCGA-EB-A44O-01	SEPT2	ENST00000443492.1	chr2	242263630:242263656:242265381:242265528:242274540:242274561,	242265382	242265528	242265483	242265483	Nonsense_Mutation	C	T	p.R29X
SKCM	TCGA-EB-A44O-01	APBB2	ENST00000506352.1,ENST00000295974.8,ENST00000513140.1	chr4	40946881:40947090:41015599:41016415:41035252:41035321,40946881:40947087:41015599:41016415:41035252:41035321,	41015600	41016415	41015864	41015864	Nonsense_Mutation	G	A	p.Q191X
SKCM	TCGA-EB-A44O-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751345	102751345	Nonsense_Mutation	C	T	p.Q151X
SKCM	TCGA-EB-A44O-01	MOG	ENST00000494692.1,ENST00000490427.1,ENST00000396704.3	chr6	29635680:29635701:29637950:29637998:29638477:29638498,	29637951	29637998	29637989	29637989	Nonsense_Mutation	A	T	p.K211X
SKCM	TCGA-EB-A44O-01	GPC2	ENST00000471717.1	chr7	99772307:99772388:99773829:99773988:99774656:99774990,99773194:99773517:99773829:99773988:99774656:99774990,	99773830	99773988	99773899	99773899	Nonsense_Mutation	G	A	p.R86X
SKCM	TCGA-D3-A2JP-06	PGM5	ENST00000396396.1,ENST00000396392.1,ENST00000604870.2	chr9	70993114:70993277:70999313:70999460:71002378:71002504,	70999314	70999460	70999394	70999394	Nonsense_Mutation	C	T	p.R169X
SKCM	TCGA-EE-A2GB-06	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	21581734:21581928:21592309:21592486:21594730:21594955,	21592310	21592486	21592418	21592418	Nonsense_Mutation	C	T	p.Q697X
SKCM	TCGA-EE-A2GB-06	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922725	150922725	Nonsense_Mutation	G	A	p.Q2655X
SKCM	TCGA-ER-A42H-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715411	68715411	Nonsense_Mutation	G	T	p.E67X
SKCM	TCGA-ER-A42H-01	UBAP2	ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33943417:33943587:33944362:33944637:33948371:33948585,	33944363	33944637	33944587	33944587	Nonsense_Mutation	G	A	p.R441X
SKCM	TCGA-D3-A3CB-06	KIAA1257	ENST00000511438.1,ENST00000515659.1,ENST00000510149.1,ENST00000265068.5	chr3	128695855:128695909:128696887:128697028:128706458:128706672,	128696888	128697028	128697005	128697005	Nonsense_Mutation	G	A	p.Q231X
SKCM	TCGA-ER-A198-06	TM7SF2	ENST00000527968.1	chr11	64882384:64882553:64882785:64882866:64882947:64882986,64882384:64882553:64882785:64882866:64883364:64883429,	64882786	64882866	64882836	64882836	Nonsense_Mutation	C	T	p.R315X
SKCM	TCGA-ER-A198-06	EML5	ENST00000553526.1,ENST00000553281.1,ENST00000380664.5,ENST00000352093.5,ENST00000555823.1,ENST00000554922.1	chr14	89088947:89089062:89091313:89091471:89093181:89093244,	89091314	89091471	89091324	89091324	Nonsense_Mutation	T	A	p.K1630X
SKCM	TCGA-ER-A198-06	SCG3	ENST00000542355.2,ENST00000220478.3	chr15	51975275:51975321:51975415:51975631:51980456:51980599,	51975416	51975631	51975628	51975628	Nonsense_Mutation	C	T	p.Q132X
SKCM	TCGA-ER-A198-06	TFAP4	ENST00000572393.1,ENST00000575320.1,ENST00000573476.1,ENST00000204517.6	chr16	4311779:4311950:4312324:4312423:4312536:4312702,	4312325	4312423	4312327	4312327	Nonsense_Mutation	G	A	p.Q118X
SKCM	TCGA-ER-A198-06	PIH1D1	ENST00000600875.1,ENST00000596916.1,ENST00000597577.1,ENST00000601807.1,ENST00000262265.5,ENST00000596049.1,ENST00000601053.1	chr19	49950280:49950356:49950594:49950724:49951083:49951165,	49950595	49950724	49950644	49950644	Nonsense_Mutation	G	A	p.Q188X
SKCM	TCGA-ER-A198-06	PIH1D1	ENST00000596651.1,ENST00000593629.1	chr19	49950280:49950356:49950594:49950677:49951083:49951165,	49950595	49950677	49950644	49950644	Nonsense_Mutation	G	A	p.Q188X
SKCM	TCGA-ER-A198-06	PIH1D1	ENST00000598889.1,ENST00000598175.1	chr19	49950280:49950356:49950594:49950674:49951083:49951165,	49950595	49950674	49950644	49950644	Nonsense_Mutation	G	A	p.Q188X
SKCM	TCGA-ER-A198-06	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157133	145157133	Nonsense_Mutation	G	A	p.Q517X
SKCM	TCGA-D9-A148-06	BLNK	ENST00000427367.2,ENST00000371176.2,ENST00000472763.1,ENST00000413476.2,ENST00000224337.5	chr10	97976408:97976490:97983581:97983745:97987165:97987253,	97983582	97983745	97983740	97983740	Nonsense_Mutation	G	A	p.R123X
SKCM	TCGA-D9-A148-06	METTL22	ENST00000163678.7	chr16	8722901:8722967:8729024:8729169:8732947:8733019,	8729025	8729169	8729067	8729067	Nonsense_Mutation	C	T	p.R200X
SKCM	TCGA-D9-A148-06	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45782746:45782926:45785591:45785777:45789513:45789721,	45785592	45785777	45785651	45785651	Nonsense_Mutation	G	A	p.R558X
SKCM	TCGA-GN-A269-01	NXF1	ENST00000294172.2,ENST00000530875.1,ENST00000531709.2,ENST00000532297.1	chr11	62563776:62563817:62563931:62564039:62564654:62564710,	62563932	62564039	62563933	62563933	Nonsense_Mutation	G	A	p.R429X
SKCM	TCGA-GN-A269-01	MRO	ENST00000436348.2,ENST00000431965.2	chr18	48331523:48331706:48333073:48333220:48345950:48345996,	48333074	48333220	48333212	48333212	Nonsense_Mutation	C	T	p.W36X
SKCM	TCGA-GN-A269-01	INPP4B	ENST00000308502.4,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000508116.1,ENST00000510812.1,ENST00000262992.4	chr4	143226610:143226690:143235864:143235915:143324090:143324162,	143235865	143235915	143235912	143235912	Nonsense_Mutation	G	A	p.R126X
SKCM	TCGA-GN-A269-01	CDK19	ENST00000463016.1	chr6	110948204:110948348:110953232:110953364:110959851:110959909,110948204:110948348:110953232:110953364:110988636:110988777,	110953233	110953364	110953310	110953310	Nonsense_Mutation	A	T	p.L190X
SKCM	TCGA-GN-A269-01	FYN	ENST00000368682.3,ENST00000518630.1,ENST00000523238.1,ENST00000524310.1,ENST00000518295.1,ENST00000520518.1,ENST00000523570.1,ENST00000517419.1,ENST00000523322.1,ENST00000538466.1,ENST00000368678.4,ENST00000229471.4,ENST00000368667.2,ENST00000462856.2,ENST00000354650.3,ENST00000356013.2,ENST00000523574.1	chr6	112029219:112029223:112035549:112035646:112041007:112041265,	112035550	112035646	112035566	112035566	Nonsense_Mutation	G	A	p.Q110X
SKCM	TCGA-D3-A1Q7-06	TRPM1	ENST00000560658.1,ENST00000559177.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31360081:31360295:31362233:31362429:31369107:31369187,	31362234	31362429	31362263	31362263	Nonsense_Mutation	G	A	p.Q101X
SKCM	TCGA-EE-A2A6-06	SLC6A13	ENST00000343164.4,ENST00000445055.2	chr12	336730:336834:344255:344390:346323:346407,	344256	344390	344336	344336	Nonsense_Mutation	G	A	p.R159X
SKCM	TCGA-D3-A51T-06	TEX26	ENST00000531960.1,ENST00000380473.3	chr13	31531094:31531166:31540358:31540535:31543021:31543183,	31540359	31540535	31540398	31540398	Nonsense_Mutation	G	A	p.W170X
SKCM	TCGA-D3-A51T-06	DNAH3	ENST00000261383.3,ENST00000415178.1	chr16	20944475:20944829:20946669:20946807:20947970:20948175,	20946670	20946807	20946802	20946802	Nonsense_Mutation	C	T	p.W3955X
SKCM	TCGA-D3-A51T-06	MIB1	ENST00000578646.1,ENST00000261537.6	chr18	19348583:19348713:19353584:19353689:19358063:19358130,	19353585	19353689	19353597	19353597	Nonsense_Mutation	C	T	p.Q182X
SKCM	TCGA-D3-A51T-06	DLGAP3	ENST00000235180.4,ENST00000373347.1	chr1	35333136:35333228:35334205:35334690:35350578:35350664,	35334206	35334690	35334369	35334369	Nonsense_Mutation	C	T	p.W774X
SKCM	TCGA-D3-A51T-06	CACNA2D3	ENST00000474759.1,ENST00000468658.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54661813:54661903:54676154:54676268:54786625:54786704,	54676155	54676268	54676263	54676263	Nonsense_Mutation	C	T	p.R388X
SKCM	TCGA-FS-A1ZS-06	ACBD4	ENST00000376955.4	chr17	43215294:43215355:43216387:43216527:43220809:43221217,43215289:43215355:43216387:43216527:43219949:43220326,	43216388	43216527	43216450	43216450	Nonsense_Mutation	C	T	p.R238X
SKCM	TCGA-FS-A1ZS-06	PEAR1	ENST00000292357.7,ENST00000455314.1	chr1	156871979:156872077:156873709:156873819:156874539:156874644,156863522:156863629:156873709:156873819:156874539:156874644,	156873710	156873819	156873814	156873814	Nonsense_Mutation	G	A	p.W32X
SKCM	TCGA-FS-A1ZS-06	CAPSL	ENST00000514524.1,ENST00000397366.1,ENST00000513623.1	chr5	35910467:35910645:35921085:35921222:35938642:35938737,	35921086	35921222	35921135	35921135	Nonsense_Mutation	G	A	p.R30X
SKCM	TCGA-FS-A1ZS-06	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000517666.1,ENST00000521496.1	chr8	124358857:124358990:124359331:124359646:124360422:124360513,	124359332	124359646	124359340	124359340	Nonsense_Mutation	A	T	p.L735X
SKCM	TCGA-DA-A1I4-06	SUPT16H	ENST00000216297.2,ENST00000557394.1	chr14	21819637:21820977:21821646:21821724:21821861:21821991,	21821647	21821724	21821653	21821653	Nonsense_Mutation	G	A	p.R998X
SKCM	TCGA-DA-A1I4-06	VPS39	ENST00000348544.4,ENST00000318006.5	chr15	42481311:42481406:42483322:42483365:42483693:42483758,	42483323	42483365	42483350	42483350	Nonsense_Mutation	G	A	p.Q74X
SKCM	TCGA-DA-A1I4-06	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214556992	214556992	Nonsense_Mutation	G	A	p.Q736X
SKCM	TCGA-DA-A1I4-06	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883447	145883447	Nonsense_Mutation	C	T	p.R849X
SKCM	TCGA-ER-A194-01	ITGAE	ENST00000263087.4	chr17	3665208:3665276:3667162:3667254:3680833:3680954,	3667163	3667254	3667190	3667190	Nonsense_Mutation	G	A	p.Q74X
SKCM	TCGA-ER-A194-01	CTDP1	ENST00000299543.7	chr18	77477809:77478016:77488906:77489069:77513651:77514501,77477809:77478016:77488906:77489069:77496354:77496521,	77488907	77489069	77488959	77488959	Nonsense_Mutation	C	T	p.Q824X
SKCM	TCGA-ER-A194-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451818	55451818	Nonsense_Mutation	C	T	p.W123X
SKCM	TCGA-ER-A194-01	VIT	ENST00000379241.3,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1,ENST00000404084.1	chr2	37032580:37032807:37035614:37036128:37041325:37041576,	37035615	37036128	37035973	37035973	Nonsense_Mutation	G	A	p.W568X
SKCM	TCGA-ER-A194-01	SP140L	ENST00000444636.1,ENST00000483728.1,ENST00000415673.2,ENST00000243810.6	chr2	231253273:231253348:231254633:231254738:231256801:231256944,	231254634	231254738	231254715	231254715	Nonsense_Mutation	T	A	p.L314X
SKCM	TCGA-ER-A194-01	OSMR	ENST00000274276.3,ENST00000502536.1	chr5	38876302:38876475:38881694:38881866:38883928:38884213,	38881695	38881866	38881853	38881853	Nonsense_Mutation	G	A	p.W135X
SKCM	TCGA-ER-A194-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229506	7229506	Nonsense_Mutation	C	T	p.Q392X
SKCM	TCGA-ER-A194-01	FKTN	ENST00000223528.2,ENST00000602526.1,ENST00000602661.1,ENST00000448551.2,ENST00000357998.5	chr9	108377561:108377688:108380239:108380373:108382214:108382342,	108380240	108380373	108380335	108380335	Nonsense_Mutation	C	T	p.Q336X
SKCM	TCGA-ER-A194-01	PTBP3	ENST00000334318.6,ENST00000374257.1,ENST00000458258.1,ENST00000343327.2,ENST00000374255.2	chr9	115014957:115015068:115024714:115024879:115030328:115030475,	115024715	115024879	115024768	115024768	Nonsense_Mutation	G	A	p.R88X
SKCM	TCGA-DA-A1HW-06	PZP	ENST00000381997.2,ENST00000535230.1,ENST00000261336.2	chr12	9307211:9307435:9309770:9309951:9310362:9310437,	9309771	9309951	9309907	9309907	Nonsense_Mutation	C	T	p.W1138X
SKCM	TCGA-DA-A1HW-06	DDX24	ENST00000555054.1,ENST00000544005.1,ENST00000330836.5	chr14	94519343:94519473:94521341:94521530:94524167:94524243,	94521342	94521530	94521401	94521401	Nonsense_Mutation	T	A	p.K707X
SKCM	TCGA-DA-A1HW-06	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1,ENST00000523085.1	chr8	51306772:51306825:51314769:51314904:51351102:51351159,	51314770	51314904	51314860	51314860	Nonsense_Mutation	G	T	p.E40X
SKCM	TCGA-D3-A2JN-06	LRRC27	ENST00000368612.1,ENST00000368615.3,ENST00000368614.3,ENST00000432555.2,ENST00000368610.3,ENST00000368613.4	chr10	134158001:134158154:134161487:134161860:134165110:134165257,	134161488	134161860	134161692	134161692	Nonsense_Mutation	G	A	p.W253X
SKCM	TCGA-D3-A2JN-06	CLEC2B	ENST00000228438.2	chr12	10005731:10006007:10006979:10007083:10010072:10010236,	10006980	10007083	10007020	10007020	Nonsense_Mutation	G	A	p.R101X
SKCM	TCGA-D3-A2JN-06	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000574224.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16108396:16108485:16110352:16110478:16126965:16127027,	16110353	16110478	16110416	16110416	Nonsense_Mutation	C	T	p.Q185X
SKCM	TCGA-EE-A2GO-06	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644837	70644837	Nonsense_Mutation	C	T	p.R429X
SKCM	TCGA-EE-A2GO-06	SLCO2B1	ENST00000341411.4,ENST00000289575.5	chr11	74862257:74862442:74873699:74873830:74875007:74875057,	74873700	74873830	74873720	74873720	Nonsense_Mutation	C	T	p.Q13X
SKCM	TCGA-EE-A2GO-06	TRAFD1	ENST00000257604.5,ENST00000412615.2	chr12	112578622:112579028:112579892:112580099:112583389:112583466,	112579893	112580099	112579928	112579928	Nonsense_Mutation	C	T	p.Q227X
SKCM	TCGA-EE-A2GO-06	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56205027	56205027	Nonsense_Mutation	T	A	p.R798X
SKCM	TCGA-EE-A2GO-06	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33331095	33331095	Nonsense_Mutation	G	A	p.Q989X
SKCM	TCGA-EE-A2GO-06	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467628:136467801:136473119:136473264:136479493:136479576,	136473120	136473264	136473261	136473261	Nonsense_Mutation	C	T	p.Q925X
SKCM	TCGA-EE-A2GO-06	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539951	187539951	Nonsense_Mutation	G	A	p.R2597X
SKCM	TCGA-EE-A2GO-06	AGPAT4	ENST00000366905.3,ENST00000320285.4,ENST00000366908.5	chr6	161587279:161587449:161653067:161653334:161694969:161695082,	161653068	161653334	161653068	161653068	Nonsense_Mutation	G	A	p.Q60X
SKCM	TCGA-EE-A2GO-06	PPP2R2A	ENST00000524169.1,ENST00000518890.1,ENST00000315985.7,ENST00000380737.3,ENST00000518215.1	chr8	26220199:26220364:26221236:26221406:26223830:26223922,	26221237	26221406	26221326	26221326	Nonsense_Mutation	C	T	p.R308X
SKCM	TCGA-EE-A2GO-06	DENND3	ENST00000520986.1	chr8	142148120:142148236:142160932:142161052:142161717:142161936,	142160933	142161052	142160972	142160972	Nonsense_Mutation	C	T	p.R179X
SKCM	TCGA-FW-A3TV-06	ACSS1	ENST00000542618.1,ENST00000432802.2,ENST00000537502.1,ENST00000323482.4	chr20	25002024:25002172:25003575:25003728:25004101:25004277,	25003576	25003728	25003716	25003716	Nonsense_Mutation	C	A	p.E274X
SKCM	TCGA-FW-A3TV-06	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25972564:25973282:25976402:25976508:25978886:25978983,	25976403	25976508	25976476	25976476	Nonsense_Mutation	G	A	p.R357X
SKCM	TCGA-FW-A3TV-06	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1	chr3	64527513:64527646:64532433:64532628:64536567:64536738,	64532434	64532628	64532455	64532455	Nonsense_Mutation	C	T	p.W1681X
SKCM	TCGA-GN-A264-06	TSNAXIP1	ENST00000565339.1,ENST00000466164.1,ENST00000487120.1,ENST00000415766.3,ENST00000568990.1,ENST00000388833.3,ENST00000561639.1	chr16	67861151:67861278:67861375:67861482:67861655:67861845,	67861376	67861482	67861433	67861433	Nonsense_Mutation	G	T	p.E563X
SKCM	TCGA-RP-A695-06	SRM	ENST00000376957.2,ENST00000459997.1	chr1	11116067:11116151:11116660:11116814:11118856:11118949,	11116661	11116814	11116706	11116706	Nonsense_Mutation	G	A	p.Q164X
SKCM	TCGA-RP-A695-06	GRB14	ENST00000543549.1	chr2	165383523:165383645:165404169:165404326:165476196:165476329,165383523:165383645:165404169:165404326:165424824:165424994,	165404170	165404326	165404205	165404205	Nonsense_Mutation	C	T	p.W149X
SKCM	TCGA-RP-A695-06	SH3BP5	ENST00000465894.2	chr3	15345609:15345738:15372010:15372073:15373777:15373983,15345609:15345738:15372010:15372073:15382729:15382744,	15372011	15372073	15372031	15372031	Nonsense_Mutation	T	A	p.R61X
SKCM	TCGA-RP-A695-06	BYSL	ENST00000372996.2	chr6	41899133:41899294:41899441:41899568:41900098:41900393,	41899442	41899568	41899486	41899486	Nonsense_Mutation	G	T	p.E296X
SKCM	TCGA-RP-A695-06	BYSL	ENST00000230340.4,ENST00000489290.1	chr6	41899133:41899294:41899465:41899568:41900098:41900393,	41899466	41899568	41899486	41899486	Nonsense_Mutation	G	T	p.E296X
SKCM	TCGA-RP-A695-06	CNKSR2	ENST00000379510.3,ENST00000279451.4,ENST00000425654.2	chrX	21519637:21519706:21534602:21534749:21544984:21545118,	21534603	21534749	21534731	21534731	Nonsense_Mutation	G	A	p.W313X
SKCM	TCGA-EE-A2MM-06	SERPING1	ENST00000378323.4	chr11	57365743:57365794:57367336:57367850:57369507:57369642,	57367337	57367850	57367646	57367646	Nonsense_Mutation	C	T	p.Q116X
SKCM	TCGA-EE-A2MM-06	SERPING1	ENST00000378324.2	chr11	57365743:57365794:57367351:57367850:57369507:57369642,57365162:57365195:57367351:57367850:57369507:57369642,	57367352	57367850	57367646	57367646	Nonsense_Mutation	C	T	p.Q116X
SKCM	TCGA-EE-A2MM-06	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000538472.1,ENST00000420015.2	chr16	14704521:14704666:14711446:14711507:14720962:14720993,	14711447	14711507	14711453	14711453	Nonsense_Mutation	G	A	p.R82X
SKCM	TCGA-EE-A2MM-06	GADD45B	ENST00000215631.4	chr19	2476526:2476628:2477026:2477249:2477485:2477565,	2477027	2477249	2477115	2477115	Nonsense_Mutation	C	T	p.Q79X
SKCM	TCGA-EE-A2MM-06	NLRP12	ENST00000492915.1,ENST00000391775.3	chr19	54296996:54297390:54299112:54299283:54301496:54301667,54296996:54297390:54299112:54299283:54304480:54304651,	54299113	54299283	54299280	54299280	Nonsense_Mutation	C	T	p.C977X
SKCM	TCGA-EE-A2MM-06	ERGIC3	ENST00000357394.4,ENST00000447986.1,ENST00000416206.1,ENST00000348547.2,ENST00000279052.6	chr20	34143977:34144042:34144743:34144880:34144964:34144987,	34144744	34144880	34144810	34144810	Nonsense_Mutation	C	T	p.Q321X
SKCM	TCGA-EE-A2MM-06	ERGIC3	ENST00000451605.1	chr20	34143977:34144042:34144725:34144880:34144964:34144987,	34144726	34144880	34144810	34144810	Nonsense_Mutation	C	T	p.Q321X
SKCM	TCGA-EE-A2MM-06	ERGIC3	ENST00000442139.1	chr20	34143977:34144042:34144647:34144880:34144964:34144987,	34144648	34144880	34144810	34144810	Nonsense_Mutation	C	T	p.Q321X
SKCM	TCGA-EE-A2MM-06	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819167	20819167	Nonsense_Mutation	G	A	p.R364X
SKCM	TCGA-EE-A3JH-06	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28877902	28877902	Nonsense_Mutation	C	T	p.R163X
SKCM	TCGA-BF-A3DM-01	LARP4	ENST00000347328.5	chr12	50835372:50835426:50848096:50848200:50854917:50855130,	50848097	50848200	50848181	50848181	Nonsense_Mutation	C	T	p.R368X
SKCM	TCGA-BF-A3DM-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6,ENST00000422127.1	chr1	228475761:228476025:228476325:228476589:228479598:228479862,	228476326	228476589	228476428	228476428	Nonsense_Mutation	G	A	p.W3822X
SKCM	TCGA-BF-A3DM-01	LIMK2	ENST00000406516.1,ENST00000340552.4,ENST00000331728.4,ENST00000444929.2,ENST00000333611.4	chr22	31661931:31662118:31662969:31663056:31663761:31663893,	31662970	31663056	31663018	31663018	Nonsense_Mutation	C	T	p.R364X
SKCM	TCGA-BF-A3DM-01	CUL7	ENST00000478630.1,ENST00000535468.1,ENST00000265348.3	chr6	43013973:43014145:43014248:43014339:43014617:43014845,	43014249	43014339	43014252	43014252	Nonsense_Mutation	G	A	p.Q829X
SKCM	TCGA-BF-A3DM-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37729818	37729818	Nonsense_Mutation	A	T	p.C834X
SKCM	TCGA-EB-A5UN-06	ANKRD16	ENST00000380094.5,ENST00000380092.4	chr10	5920084:5920250:5922260:5922339:5924968:5925130,	5922261	5922339	5922267	5922267	Nonsense_Mutation	G	A	p.R308X
SKCM	TCGA-EB-A5UN-06	CCDC90B	ENST00000529073.1,ENST00000534753.1,ENST00000526631.1,ENST00000260054.4	chr11	82985681:82985783:82991183:82991303:82996169:82996254,82985682:82985783:82991183:82991303:82996595:82997011,82985681:82985783:82991183:82991303:82996915:82997007,82989768:82989872:82991183:82991303:82996915:82997007,	82991184	82991303	82991202	82991202	Nonsense_Mutation	G	A	p.Q68X
SKCM	TCGA-EB-A5UN-06	MYO5C	ENST00000443683.2,ENST00000261839.7,ENST00000560809.1,ENST00000558902.1	chr15	52539113:52539211:52539654:52539789:52540896:52540976,	52539655	52539789	52539765	52539765	Nonsense_Mutation	G	A	p.Q591X
SKCM	TCGA-EB-A5UN-06	RAD1	ENST00000513914.1	chr5	34911722:34911917:34913574:34913683:34914799:34914906,34911722:34911917:34913574:34913683:34914031:34914131,	34913575	34913683	34913671	34913671	Nonsense_Mutation	G	A	p.Q71X
SKCM	TCGA-EE-A2A5-06	STK38L	ENST00000545470.1,ENST00000539577.1,ENST00000389032.3	chr12	27462046:27462130:27465481:27465605:27467436:27467591,	27465482	27465605	27465494	27465494	Nonsense_Mutation	C	T	p.R136X
SKCM	TCGA-EE-A2A5-06	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159897984	159897984	Nonsense_Mutation	C	T	p.W1065X
SKCM	TCGA-EE-A2A5-06	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927268	43927268	Nonsense_Mutation	C	T	p.Q391X
SKCM	TCGA-EE-A2A5-06	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231825	230231825	Nonsense_Mutation	C	T	p.W622X
SKCM	TCGA-EE-A2A5-06	TBL1XR1	ENST00000457928.2,ENST00000430069.1	chr3	176751985:176752113:176755885:176755960:176756100:176756222,	176755886	176755960	176755937	176755937	Nonsense_Mutation	C	T	p.W357X
SKCM	TCGA-EE-A2A5-06	TG	ENST00000522996.1,ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000522809.1,ENST00000220616.4,ENST00000519178.1	chr8	134107402:134107452:134108449:134108617:134125665:134125740,	134108450	134108617	134108579	134108579	Nonsense_Mutation	C	T	p.Q2512X
SKCM	TCGA-EE-A3JD-06	LYVE1	ENST00000531706.1,ENST00000256178.3	chr11	10582041:10582347:10585486:10585626:10585749:10585777,	10585487	10585626	10585618	10585618	Nonsense_Mutation	C	T	p.W89X
SKCM	TCGA-EE-A3JD-06	CCDC38	ENST00000549876.1,ENST00000344280.3	chr12	96266139:96266238:96271988:96272124:96273421:96273449,	96271989	96272124	96272009	96272009	Nonsense_Mutation	C	A	p.E420X
SKCM	TCGA-EE-A3JD-06	OAS2	ENST00000392583.2	chr12	113416406:113416590:113424842:113425113:113433100:113433279,	113424843	113425113	113424927	113424927	Nonsense_Mutation	C	T	p.Q88X
SKCM	TCGA-EE-A3JD-06	PKD1L2	ENST00000526632.1,ENST00000525539.1,ENST00000299598.7,ENST00000531391.1,ENST00000533478.1,ENST00000337114.4	chr16	81211411:81211588:81213249:81213391:81214755:81214876,	81213250	81213391	81213265	81213265	Nonsense_Mutation	G	A	p.R749X
SKCM	TCGA-EE-A3JD-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317X
SKCM	TCGA-EE-A3JD-06	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57092970:57093160:57094656:57094785:57105775:57105940,	57094657	57094785	57094720	57094720	Nonsense_Mutation	G	A	p.R775X
SKCM	TCGA-EE-A3JD-06	BCAS3	ENST00000407086.3,ENST00000586041.1,ENST00000585744.1,ENST00000588462.1,ENST00000408905.3,ENST00000390652.5,ENST00000586484.1,ENST00000589222.1,ENST00000586705.1,ENST00000590128.1,ENST00000588874.1	chr17	58967121:58967132:58979980:58980064:58987892:58988063,	58979981	58980064	58980029	58980029	Nonsense_Mutation	C	T	p.Q263X
SKCM	TCGA-EE-A3JD-06	ZNF77	ENST00000314531.4	chr19	2933215:2934813:2936521:2936702:2939278:2939405,	2936522	2936702	2936550	2936550	Nonsense_Mutation	G	A	p.Q95X
SKCM	TCGA-EE-A3JD-06	CYP4F12	ENST00000549622.1,ENST00000548237.1	chr19	15783899:15783945:15784338:15784537:15789070:15789139,15783899:15783945:15784338:15784537:15791053:15791062,	15784339	15784537	15784425	15784425	Nonsense_Mutation	G	A	p.W29X
SKCM	TCGA-EE-A3JD-06	CYP2F1	ENST00000331105.2,ENST00000531409.1,ENST00000532164.2	chr19	41622359:41622522:41626251:41626401:41627362:41627523,	41626252	41626401	41626275	41626275	Nonsense_Mutation	C	T	p.R120X
SKCM	TCGA-EE-A3JD-06	C8A	ENST00000361249.3	chr1	57341734:57341882:57347117:57347307:57349153:57349285,	57347118	57347307	57347208	57347208	Nonsense_Mutation	G	A	p.W185X
SKCM	TCGA-EE-A3JD-06	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324309	158324309	Nonsense_Mutation	G	A	p.W67X
SKCM	TCGA-EE-A3JD-06	ROCK2	ENST00000261535.3,ENST00000315872.6	chr2	11367379:11367524:11375827:11376088:11389786:11389924,	11375828	11376088	11376073	11376073	Nonsense_Mutation	G	A	p.Q160X
SKCM	TCGA-EE-A3JD-06	PTCD3	ENST00000254630.7	chr2	86354283:86354428:86355063:86355114:86357770:86357860,	86355064	86355114	86355108	86355108	Nonsense_Mutation	C	T	p.Q381X
SKCM	TCGA-EE-A3JD-06	SULT1C4	ENST00000409309.3	chr2	108998217:108998343:108999871:108999966:109002647:109002828,	108999872	108999966	108999909	108999909	Nonsense_Mutation	G	A	p.W186X
SKCM	TCGA-EE-A3JD-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749422	196749422	Nonsense_Mutation	G	A	p.R1884X
SKCM	TCGA-EE-A3JD-06	KBTBD12	ENST00000405109.1,ENST00000405256.1	chr3	127634317:127634429:127646606:127646877:127648975:127649126,127642923:127642974:127646606:127646877:127648975:127649126,	127646607	127646877	127646784	127646784	Nonsense_Mutation	G	A	p.W416X
SKCM	TCGA-EE-A3JD-06	FRAS1	ENST00000264895.6,ENST00000325942.6	chr4	79296892:79297033:79300879:79301150:79305212:79305297,	79300880	79301150	79301097	79301097	Nonsense_Mutation	G	A	p.W1170X
SKCM	TCGA-EE-A3JD-06	C5orf34	ENST00000514462.1	chr5	43505849:43506496:43508678:43508768:43514907:43515126,	43508679	43508768	43508741	43508741	Nonsense_Mutation	G	A	p.R75X
SKCM	TCGA-EE-A3JD-06	SLC17A1	ENST00000377886.2,ENST00000427328.1,ENST00000244527.4	chr6	25783353:25783446:25799010:25799147:25801117:25801208,	25799011	25799147	25799051	25799051	Nonsense_Mutation	G	A	p.Q456X
SKCM	TCGA-EE-A3JD-06	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112451077:112451242:112452169:112452303:112453954:112454092,	112452170	112452303	112452237	112452237	Nonsense_Mutation	G	A	p.Q1294X
SKCM	TCGA-EE-A3JD-06	PDE1C	ENST00000321453.7,ENST00000396193.1,ENST00000396184.3,ENST00000396182.2,ENST00000396191.1	chr7	31876793:31876914:31877483:31877585:31887581:31887710,	31877484	31877585	31877578	31877578	Nonsense_Mutation	G	A	p.R330X
SKCM	TCGA-EE-A3JD-06	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87080938:87081110:87082259:87082451:87083850:87083908,	87082260	87082451	87082366	87082366	Nonsense_Mutation	G	A	p.R144X
SKCM	TCGA-EE-A3JD-06	MRPS33	ENST00000324787.5	chr7	140705968:140706335:140710218:140710460:140714151:140714229,140705968:140706335:140710218:140710460:140714710:140714749,	140710219	140710460	140710238	140710238	Nonsense_Mutation	G	A	p.R66X
SKCM	TCGA-EE-A3JD-06	MRPS33	ENST00000467334.1	chr7	140705968:140706335:140710218:140710417:140714710:140714749,	140710219	140710417	140710238	140710238	Nonsense_Mutation	G	A	p.R66X
SKCM	TCGA-EE-A3JD-06	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119495677:119495802:119567910:119568099:119582895:119583062,	119567911	119568099	119567939	119567939	Nonsense_Mutation	G	A	p.Q739X
SKCM	TCGA-RP-A693-06	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214816611	214816611	Nonsense_Mutation	C	T	p.Q1644X
SKCM	TCGA-RP-A693-06	ADH1A	ENST00000209668.2	chr4	100200582:100200721:100201300:100201436:100203502:100203763,	100201301	100201436	100201320	100201320	Nonsense_Mutation	C	T	p.W315X
SKCM	TCGA-EE-A185-06	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996532	45996532	Nonsense_Mutation	G	A	p.Q307X
SKCM	TCGA-EE-A185-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525945	176525945	Nonsense_Mutation	C	T	p.Q163X
SKCM	TCGA-EE-A185-06	CEP350	ENST00000367607.3	chr1	180003085:180003217:180006060:180006224:180010272:180010383,	180006061	180006224	180006154	180006154	Nonsense_Mutation	C	G	p.S1347X
SKCM	TCGA-EE-A185-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-EE-A185-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
SKCM	TCGA-D3-A3MV-06	TNS4	ENST00000254051.6	chr17	38638575:38638668:38640735:38640861:38641172:38641259,	38640736	38640861	38640799	38640799	Nonsense_Mutation	G	A	p.R480X
SKCM	TCGA-D3-A3MV-06	DSC2	ENST00000251081.6,ENST00000280904.6	chr18	28650691:28650816:28651570:28651807:28654648:28654873,	28651571	28651807	28651784	28651784	Nonsense_Mutation	G	A	p.Q638X
SKCM	TCGA-D3-A3MV-06	GPATCH2	ENST00000366935.3	chr1	217622590:217622679:217665021:217665092:217671697:217671737,	217665022	217665092	217665071	217665071	Nonsense_Mutation	G	A	p.R410X
SKCM	TCGA-D3-A3MV-06	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326115	89326115	Nonsense_Mutation	A	T	p.K394X
SKCM	TCGA-D3-A3MV-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110X
SKCM	TCGA-D3-A3MV-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110X
SKCM	TCGA-D3-A3MV-06	UPF3B	ENST00000345865.2,ENST00000276201.2	chrX	118967988:118968990:118971719:118972014:118972329:118972490,	118971720	118972014	118971941	118971941	Nonsense_Mutation	G	A	p.R361X
SKCM	TCGA-D3-A2JL-06	DCAF4	ENST00000505361.1,ENST00000514191.1,ENST00000555042.1,ENST00000509153.1,ENST00000353777.3,ENST00000509320.1	chr14	73393185:73393251:73404678:73404778:73406509:73406610,	73404679	73404778	73404717	73404717	Nonsense_Mutation	C	T	p.R11X
SKCM	TCGA-EE-A3JE-06	EHD1	ENST00000359393.2,ENST00000320631.3,ENST00000421510.1	chr11	64622083:64622329:64622793:64622958:64627395:64627517,	64622794	64622958	64622856	64622856	Nonsense_Mutation	G	A	p.Q340X
SKCM	TCGA-EE-A3JE-06	NFATC3	ENST00000569766.1,ENST00000570212.1,ENST00000567152.1,ENST00000346183.3	chr16	68217142:68217269:68224670:68225678:68248231:68248335,68217142:68217269:68224670:68225678:68260252:68260374,	68224671	68225678	68225519	68225519	Nonsense_Mutation	C	T	p.Q983X
SKCM	TCGA-EE-A3JE-06	FRYL	ENST00000512810.1,ENST00000264319.7,ENST00000503339.1,ENST00000507873.2	chr4	48502046:48502237:48503639:48503750:48507563:48507632,	48503640	48503750	48503669	48503669	Nonsense_Mutation	G	A	p.Q2855X
SKCM	TCGA-EE-A3JE-06	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005366	150005366	Nonsense_Mutation	G	A	p.R287X
SKCM	TCGA-FS-A1ZN-01	ABCD3	ENST00000536817.1,ENST00000484213.1,ENST00000370214.4,ENST00000454898.2,ENST00000394233.2	chr1	94964338:94964404:94964500:94964590:94965050:94965170,	94964501	94964590	94964564	94964564	Nonsense_Mutation	C	T	p.Q532X
SKCM	TCGA-HR-A2OG-06	AP1G1	ENST00000423132.2,ENST00000565009.1,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000565642.1,ENST00000562934.1,ENST00000393512.3	chr16	71782170:71782281:71783796:71783886:71784112:71784235,	71783797	71783886	71783811	71783811	Nonsense_Mutation	C	A	p.E498X
SKCM	TCGA-HR-A2OG-06	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127915952	127915952	Nonsense_Mutation	G	A	p.R155X
SKCM	TCGA-D9-A4Z6-06	MYLK3	ENST00000394809.4	chr16	46766119:46766580:46771622:46772055:46773968:46774059,	46771623	46772055	46771693	46771693	Nonsense_Mutation	G	A	p.Q311X
SKCM	TCGA-D3-A3ML-06	SLC15A4	ENST00000376744.4,ENST00000539703.1	chr12	129294487:129294598:129299319:129299615:129307942:129308067,129293940:129294018:129299319:129299615:129307942:129308067,	129299320	129299615	129299606	129299606	Nonsense_Mutation	G	A	p.R186*
SKCM	TCGA-D3-A3ML-06	UBE2E2	ENST00000335798.4	chr3	23541098:23541231:23574044:23574192:23631224:23631713,23258752:23258803:23574044:23574192:23631224:23631713,	23574045	23574192	23574054	23574054	Nonsense_Mutation	C	T	p.R124*
SKCM	TCGA-D3-A3ML-06	ACSM2B	ENST00000569163.1	chr16	20559715:20559795:20563465:20563619:20565098:20565145,20560932:20561200:20563465:20563619:20565098:20565145,	20563466	20563619	20563565	20563565	Nonsense_Mutation	C	T	p.W265*
SKCM	TCGA-D3-A3ML-06	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022544	64022544	Nonsense_Mutation	G	A	p.R33*
SKCM	TCGA-D3-A3ML-06	ABCA4	ENST00000370225.3	chr1	94495000:94495187:94495983:94496082:94496551:94496676,	94495984	94496082	94495990	94495990	Nonsense_Mutation	C	T	p.W1449*
SKCM	TCGA-D3-A3ML-06	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141721385:141721537:141722067:141722239:141724849:141724949,	141722068	141722239	141722126	141722126	Nonsense_Mutation	C	T	p.R257*
SKCM	TCGA-D3-A3ML-06	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3149142:3149199:3151691:3151891:3154944:3155086,	3151692	3151891	3151782	3151782	Nonsense_Mutation	G	A	p.R585*
SKCM	TCGA-D3-A3ML-06	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3,ENST00000488166.1	chr21	35138178:35138316:35140016:35140132:35144364:35144586,	35140017	35140132	35140024	35140024	Nonsense_Mutation	C	T	p.R312*
SKCM	TCGA-D3-A3ML-06	MED12L	ENST00000474524.1	chr3	151129065:151129295:151130926:151131083:151134099:151134210,	151130927	151131083	151131060	151131060	Nonsense_Mutation	C	T	p.R2057*
SKCM	TCGA-EE-A3AF-06	AKR1D1	ENST00000468877.2,ENST00000411726.2,ENST00000242375.3	chr7	137792160:137792326:137798435:137798518:137801365:137801612,	137798436	137798518	137798460	137798460	Nonsense_Mutation	G	T	p.E294*
SKCM	TCGA-EE-A3AF-06	TRIP6	ENST00000417475.1,ENST00000437505.1,ENST00000200457.4,ENST00000476870.1	chr7	100465742:100465855:100466116:100466488:100467991:100468085,	100466117	100466488	100466486	100466486	Nonsense_Mutation	C	T	p.Q245*
SKCM	TCGA-EE-A3AF-06	LIN7A	ENST00000549417.1,ENST00000261203.3	chr12	81242029:81242101:81283029:81283148:81331419:81331483,	81283030	81283148	81283035	81283035	Nonsense_Mutation	G	A	p.R66*
SKCM	TCGA-EE-A3AF-06	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163455	163455	Nonsense_Mutation	C	T	p.Q734*
SKCM	TCGA-EE-A3AF-06	SLC6A13	ENST00000542272.1	chr12	351779:351920:352844:352979:369016:369223,351779:351920:352844:352979:371954:371982,	352845	352979	352917	352917	Nonsense_Mutation	C	A	p.E89*
SKCM	TCGA-EE-A3AF-06	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381022.2	chr9	13123151:13123297:13125214:13125389:13126514:13126589,	13125215	13125389	13125266	13125266	Nonsense_Mutation	G	A	p.Q1586*
SKCM	TCGA-EE-A3AF-06	ST6GAL1	ENST00000169298.3,ENST00000448044.1	chr3	186756529:186756661:186760441:186761098:186769036:186769134,	186760442	186761098	186760986	186760986	Nonsense_Mutation	G	A	p.W165*
SKCM	TCGA-EE-A3AF-06	UAP1	ENST00000367924.1,ENST00000367925.1,ENST00000271469.3	chr1	162560112:162560301:162567581:162567648:162569060:162569589,162562524:162562572:162567581:162567648:162569060:162569589,	162567582	162567648	162567610	162567610	Nonsense_Mutation	C	T	p.Q480*
SKCM	TCGA-EE-A3AF-06	SEMA5B	ENST00000393583.2	chr3	122667428:122667556:122679986:122680148:122693949:122694217,122667428:122667556:122679986:122680148:122746310:122746425,122667428:122667556:122679986:122680148:122711631:122712120,	122679987	122680148	122680022	122680022	Nonsense_Mutation	C	T	p.W30*
SKCM	TCGA-EE-A3AF-06	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90857303	90857303	Nonsense_Mutation	T	G	p.Y824*
SKCM	TCGA-DA-A1I2-06	ACMSD	ENST00000485893.1,ENST00000356140.5	chr2	135602802:135602847:135616830:135616927:135620964:135621201,135602802:135602847:135616830:135616927:135619538:135619588,	135616831	135616927	135616917	135616917	Nonsense_Mutation	G	A	p.W22*
SKCM	TCGA-DA-A1I2-06	POLR2D	ENST00000409698.1,ENST00000272645.4	chr2	128605712:128605759:128608163:128608259:128610498:128610679,	128608164	128608259	128608249	128608249	Nonsense_Mutation	G	A	p.Q89*
SKCM	TCGA-EE-A29V-06	UNC13D	ENST00000412096.2,ENST00000207549.4,ENST00000591563.1,ENST00000586108.1	chr17	73839239:73839347:73839564:73839600:73840301:73840415,	73839565	73839600	73839597	73839597	Nonsense_Mutation	G	A	p.Q41*
SKCM	TCGA-EE-A29V-06	CDC42BPB	ENST00000361246.2,ENST00000558321.1,ENST00000561271.1	chr14	103452846:103452917:103465901:103466050:103470264:103470360,	103465902	103466050	103465993	103465993	Nonsense_Mutation	C	A	p.E169*
SKCM	TCGA-EE-A29V-06	HADHB	ENST00000494615.1,ENST00000537713.1,ENST00000317799.5,ENST00000545822.1	chr2	26499940:26500028:26501481:26501669:26502002:26502183,	26501482	26501669	26501646	26501646	Nonsense_Mutation	C	T	p.R203*
SKCM	TCGA-EE-A29V-06	ZNF415	ENST00000500065.4	chr19	53613129:53613161:53619565:53619686:53625914:53625996,53613129:53613161:53619565:53619686:53625656:53625865,	53619566	53619686	53619642	53619642	Nonsense_Mutation	C	T	p.W20*
SKCM	TCGA-EE-A29V-06	NLRP7	ENST00000590030.1,ENST00000340844.2	chr19	55438972:55439143:55441866:55442034:55444936:55445107,55435020:55435240:55441866:55442034:55444936:55445107,	55441867	55442034	55441917	55441917	Nonsense_Mutation	C	T	p.W920*
SKCM	TCGA-EE-A29V-06	PPARG	ENST00000497594.1,ENST00000539812.1,ENST00000438682.1,ENST00000309576.6,ENST00000397010.2,ENST00000397000.1,ENST00000397012.2	chr3	12353886:12353952:12421202:12421430:12422820:12422891,	12421203	12421430	12421418	12421418	Nonsense_Mutation	C	T	p.Q78*
SKCM	TCGA-EE-A29V-06	IL36B	ENST00000259213.4	chr2	113779667:113780354:113783679:113783809:113786515:113786655,	113783680	113783809	113783693	113783693	Nonsense_Mutation	C	T	p.W126*
SKCM	TCGA-EE-A29V-06	RASGRP3	ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33783277:33783403:33783738:33784097:33787795:33789672,	33783739	33784097	33783992	33783992	Nonsense_Mutation	G	A	p.W653*
SKCM	TCGA-EE-A29V-06	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000507620.1	chr3	142215975:142216034:142217438:142217616:142218468:142218560,	142217439	142217616	142217461	142217461	Nonsense_Mutation	G	A	p.R1846*
SKCM	TCGA-EE-A29V-06	ACVRL1	ENST00000388922.4,ENST00000419526.2,ENST00000550683.1	chr12	52309819:52310017:52312768:52312899:52314542:52314853,	52312769	52312899	52312851	52312851	Nonsense_Mutation	T	A	p.C457*
SKCM	TCGA-EE-A29V-06	TMEM59L	ENST00000262817.3,ENST00000600490.1	chr19	18728964:18729082:18729184:18729302:18731217:18731816,	18729185	18729302	18729300	18729300	Nonsense_Mutation	C	T	p.Q300*
SKCM	TCGA-EE-A2ML-06	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800500	28800500	Nonsense_Mutation	C	T	p.R420*
SKCM	TCGA-EE-A2ML-06	TAS1R1	ENST00000333172.6	chr1	6631000:6631275:6634690:6635452:6636474:6636687,	6634691	6635452	6634815	6634815	Nonsense_Mutation	G	A	p.W208*
SKCM	TCGA-EE-A2ML-06	EDN3	ENST00000371028.2,ENST00000395654.3,ENST00000371025.3,ENST00000311585.7	chr20	57875757:57875919:57876464:57876777:57896071:57896248,	57876465	57876777	57876515	57876515	Nonsense_Mutation	C	T	p.Q35*
SKCM	TCGA-EE-A2ML-06	ARHGEF17	ENST00000263674.3	chr11	73057927:73058005:73063874:73064057:73066577:73066694,	73063875	73064057	73064052	73064052	Nonsense_Mutation	C	T	p.Q1150*
SKCM	TCGA-EE-A2ML-06	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729713	24729713	Nonsense_Mutation	G	A	p.Q234*
SKCM	TCGA-EE-A2ML-06	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332856	175332856	Nonsense_Mutation	G	A	p.R899*
SKCM	TCGA-EE-A2ML-06	FAT3	ENST00000525166.1,ENST00000298047.6,ENST00000409404.2	chr11	92523108:92523384:92525932:92526143:92531001:92535075,	92525933	92526143	92525957	92525957	Nonsense_Mutation	C	T	p.R1546*
SKCM	TCGA-ER-A42L-06	ACLY	ENST00000353196.1,ENST00000537919.1	chr17	40068672:40068795:40069967:40070149:40075132:40075204,	40069968	40070149	40070007	40070007	Nonsense_Mutation	C	T	p.W40*
SKCM	TCGA-ER-A42L-06	ACLY	ENST00000393896.2,ENST00000590151.1	chr17	40068672:40068795:40069967:40070153:40075132:40075204,	40069968	40070153	40070007	40070007	Nonsense_Mutation	C	T	p.W40*
SKCM	TCGA-ER-A42L-06	PGAP1	ENST00000470179.1,ENST00000354764.4,ENST00000423035.1	chr2	197706062:197706096:197707444:197707549:197708611:197708799,	197707445	197707549	197707546	197707546	Nonsense_Mutation	A	T	p.Y843*
SKCM	TCGA-ER-A42L-06	ANKRD27	ENST00000588700.1	chr19	33134477:33134537:33135230:33135385:33140587:33140698,	33135231	33135385	33135275	33135275	Nonsense_Mutation	G	A	p.R161*
SKCM	TCGA-ER-A42L-06	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870865	101870865	Nonsense_Mutation	C	T	p.Q1128*
SKCM	TCGA-ER-A42L-06	TPO	ENST00000497517.2	chr2	1500366:1500537:1507719:1507851:1520654:1520751,1497573:1497811:1507719:1507851:1520654:1520751,	1507720	1507851	1507825	1507825	Nonsense_Mutation	T	A	p.L831*
SKCM	TCGA-ER-A42L-06	DQX1	ENST00000404568.3,ENST00000393951.2,ENST00000473508.1	chr2	74750465:74750664:74751049:74751434:74752135:74752329,	74751050	74751434	74751426	74751426	Nonsense_Mutation	C	T	p.W147*
SKCM	TCGA-ER-A42L-06	EIF3E	ENST00000521614.1,ENST00000220849.5,ENST00000519030.1	chr8	109215211:109215346:109215629:109215732:109226835:109226945,	109215630	109215732	109215673	109215673	Nonsense_Mutation	A	T	p.L374*
SKCM	TCGA-ER-A42L-06	SLC39A12	ENST00000377374.4,ENST00000377371.3,ENST00000539911.1,ENST00000377369.2	chr10	18254411:18254619:18266830:18267003:18270240:18270412,	18266831	18267003	18266935	18266935	Nonsense_Mutation	C	T	p.Q286*
SKCM	TCGA-ER-A42L-06	DHX32	ENST00000284690.3	chr10	127542529:127542772:127548171:127548544:127555558:127555752,	127548172	127548544	127548267	127548267	Nonsense_Mutation	G	A	p.Q252*
SKCM	TCGA-ER-A42L-06	KLHDC4	ENST00000564396.1	chr16	87788799:87788860:87790027:87790083:87795554:87795622,87788803:87788898:87790027:87790083:87795554:87795622,	87790028	87790083	87790031	87790031	Nonsense_Mutation	C	A	p.G82*
SKCM	TCGA-ER-A42L-06	KLHDC4	ENST00000567298.1,ENST00000347925.5,ENST00000270583.5,ENST00000561825.1	chr16	87788803:87788898:87790004:87790083:87795554:87795622,	87790005	87790083	87790031	87790031	Nonsense_Mutation	C	A	p.G82*
SKCM	TCGA-ER-A42L-06	KLHDC4	ENST00000566661.1	chr16	87782404:87782415:87788799:87790083:87795554:87795622,	87788800	87790083	87790031	87790031	Nonsense_Mutation	C	A	p.G82*
SKCM	TCGA-ER-A42L-06	AGAP1	ENST00000336665.5,ENST00000304032.8	chr2	236402750:236403493:236617822:236617881:236626200:236626288,	236617823	236617881	236617840	236617840	Nonsense_Mutation	C	T	p.Q326*
SKCM	TCGA-HR-A2OG-06	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127915952	127915952	Nonsense_Mutation	G	A	p.R214*
SKCM	TCGA-HR-A2OG-06	AP1G1	ENST00000423132.2,ENST00000565009.1,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000565642.1,ENST00000562934.1,ENST00000393512.3	chr16	71782170:71782281:71783796:71783886:71784112:71784235,	71783797	71783886	71783811	71783811	Nonsense_Mutation	C	A	p.E495*
SKCM	TCGA-XV-AB01-06	TFAP2A	ENST00000466073.1	chr6	10400680:10400822:10402724:10402843:10404740:10404827,10398920:10398938:10402724:10402843:10404740:10404827,	10402725	10402843	10402764	10402764	Nonsense_Mutation	T	A	p.K284*
SKCM	TCGA-FW-A3TV-06	ACSS1	ENST00000542618.1,ENST00000432802.2,ENST00000537502.1,ENST00000323482.4	chr20	25002024:25002172:25003575:25003728:25004101:25004277,	25003576	25003728	25003716	25003716	Nonsense_Mutation	C	A	p.E191*
SKCM	TCGA-FW-A3TV-06	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1	chr3	64527513:64527646:64532433:64532628:64536567:64536738,	64532434	64532628	64532455	64532455	Nonsense_Mutation	C	T	p.W1681*
SKCM	TCGA-FW-A3TV-06	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25972564:25973282:25976402:25976508:25978886:25978983,	25976403	25976508	25976476	25976476	Nonsense_Mutation	G	A	p.R357*
SKCM	TCGA-D3-A2JO-06	CALCOCO2	ENST00000509415.1,ENST00000258947.3,ENST00000513119.1,ENST00000502761.1,ENST00000508679.1,ENST00000448105.2,ENST00000509507.1,ENST00000514962.1	chr17	46925683:46925817:46926613:46926739:46928450:46928486,	46926614	46926739	46926728	46926728	Nonsense_Mutation	C	T	p.Q178*
SKCM	TCGA-D3-A2JO-06	HLA-DRA	ENST00000395388.2	chr6	32410227:32410470:32410961:32411243:32411532:32411698,	32410962	32411243	32411075	32411075	Nonsense_Mutation	C	T	p.R148*
SKCM	TCGA-D3-A2JO-06	HLA-DRA	ENST00000374982.5	chr6	32410227:32410470:32411036:32411243:32411532:32411698,	32411037	32411243	32411075	32411075	Nonsense_Mutation	C	T	p.R148*
SKCM	TCGA-D3-A2JO-06	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219*
SKCM	TCGA-D3-A2JO-06	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219*
SKCM	TCGA-D3-A2JO-06	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230571	46230571	Nonsense_Mutation	C	T	p.R274*
SKCM	TCGA-EE-A2GP-06	VWF	ENST00000261405.5,ENST00000538635.1	chr12	6220031:6220134:6230339:6230504:6232307:6232362,	6230340	6230504	6230460	6230460	Nonsense_Mutation	G	A	p.R34*
SKCM	TCGA-EE-A2GP-06	CYP4Z1	ENST00000334194.3	chr1	47546294:47546339:47548005:47548133:47550291:47550416,	47548006	47548133	47548008	47548008	Nonsense_Mutation	C	T	p.R123*
SKCM	TCGA-EE-A2GP-06	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28574495	28574495	Nonsense_Mutation	C	T	p.Q307*
SKCM	TCGA-EE-A2GP-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-EE-A2GP-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-EE-A2GP-06	TBC1D22A	ENST00000407381.3,ENST00000406733.1,ENST00000394449.2,ENST00000337137.4,ENST00000355704.3	chr22	47370185:47370295:47393529:47393605:47432966:47433094,	47393530	47393605	47393560	47393560	Nonsense_Mutation	C	T	p.Q386*
SKCM	TCGA-EE-A2GP-06	C1orf127	ENST00000520253.1,ENST00000377004.4	chr1	11014075:11014199:11015046:11015243:11017079:11017164,	11015047	11015243	11015049	11015049	Nonsense_Mutation	G	A	p.Q325*
SKCM	TCGA-EE-A2GP-06	DPPA4	ENST00000495679.1,ENST00000487299.1,ENST00000335658.6	chr3	109047864:109047935:109049370:109049659:109050580:109050631,	109049371	109049659	109049623	109049623	Nonsense_Mutation	T	A	p.K143*
SKCM	TCGA-EE-A2MN-06	NRP1	ENST00000395995.1,ENST00000374867.2,ENST00000374875.1,ENST00000265371.4	chr10	33475144:33475416:33481208:33481346:33486577:33486637,	33481209	33481346	33481310	33481310	Nonsense_Mutation	C	T	p.W654*
SKCM	TCGA-EE-A2MN-06	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098526	47098526	Nonsense_Mutation	G	A	p.Q2250*
SKCM	TCGA-EE-A2MN-06	PNPLA7	ENST00000406427.1,ENST00000371457.1,ENST00000434090.1,ENST00000277531.4,ENST00000469998.1	chr9	140356630:140356783:140357136:140357285:140357866:140357983,	140357137	140357285	140357203	140357203	Nonsense_Mutation	A	T	p.Y1142*
SKCM	TCGA-EE-A2MN-06	ALDOB	ENST00000374855.4	chr9	104182859:104184186:104187124:104187324:104187734:104187909,	104187125	104187324	104187160	104187160	Nonsense_Mutation	C	A	p.E322*
SKCM	TCGA-GN-A4U7-06	SLC25A35	ENST00000577745.1,ENST00000579681.1,ENST00000580340.1,ENST00000380067.2,ENST00000585311.1,ENST00000579192.1,ENST00000396278.1	chr17	8194159:8194294:8194650:8194803:8195840:8195906,	8194651	8194803	8194751	8194751	Nonsense_Mutation	A	T	p.L165*
SKCM	TCGA-GN-A263-01	PSTPIP2	ENST00000589328.1,ENST00000409746.5	chr18	43563501:43565416:43568667:43568725:43570687:43570722,	43568668	43568725	43568681	43568681	Nonsense_Mutation	G	A	p.Q334*
SKCM	TCGA-GN-A263-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000439170.2,ENST00000460856.1	chr3	124065989:124066112:124103691:124103883:124113981:124114151,	124103692	124103883	124103806	124103806	Nonsense_Mutation	C	T	p.Q627*
SKCM	TCGA-GN-A263-01	HECW2	ENST00000260983.3	chr2	197183275:197184628:197185062:197185163:197187201:197187344,	197185063	197185163	197185159	197185159	Nonsense_Mutation	G	A	p.Q297*
SKCM	TCGA-EE-A2GC-06	NUMA1	ENST00000545721.1,ENST00000358965.6,ENST00000541584.1	chr11	71720313:71720433:71721831:71721900:71723940:71723972,	71721832	71721900	71721864	71721864	Nonsense_Mutation	G	A	p.Q1563*
SKCM	TCGA-EE-A2GC-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749452	196749452	Nonsense_Mutation	G	A	p.R1874*
SKCM	TCGA-EE-A2GC-06	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609005	179609005	Nonsense_Mutation	C	T	p.R518*
SKCM	TCGA-EE-A2GC-06	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854289	40854289	Nonsense_Mutation	C	T	p.W35*
SKCM	TCGA-EE-A2GC-06	ACSM2B	ENST00000569163.1	chr16	20559715:20559795:20563465:20563619:20565098:20565145,20560932:20561200:20563465:20563619:20565098:20565145,	20563466	20563619	20563565	20563565	Nonsense_Mutation	C	T	p.W265*
SKCM	TCGA-EE-A2GC-06	CIITA	ENST00000573309.1,ENST00000381835.5	chr16	10992781:10992859:10995370:10995415:10995894:10996017,10992781:10992859:10995370:10995415:10996514:10996579,	10995371	10995415	10995407	10995407	Nonsense_Mutation	G	A	p.W158*
SKCM	TCGA-EE-A2GC-06	CDH12	ENST00000504376.2,ENST00000382254.1,ENST00000517378.1	chr5	21842269:21842437:21854779:21854899:21975199:21975494,	21854780	21854899	21854885	21854885	Nonsense_Mutation	G	A	p.Q181*
SKCM	TCGA-EE-A2GC-06	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74014526:74014681:74014994:74015141:74015608:74015734,	74014995	74015141	74015007	74015007	Nonsense_Mutation	C	T	p.W424*
SKCM	TCGA-EE-A2GC-06	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189849485:189849688:189849922:189849973:189850390:189850504,	189849923	189849973	189849944	189849944	Nonsense_Mutation	C	T	p.Q102*
SKCM	TCGA-EE-A2GC-06	OLR1	ENST00000339968.6,ENST00000539518.1,ENST00000538745.1,ENST00000309539.3	chr12	10312617:10312620:10313384:10313524:10319310:10319548,10313000:10313061:10313384:10313524:10319310:10319548,	10313385	10313524	10313505	10313505	Nonsense_Mutation	C	T	p.W148*
SKCM	TCGA-EE-A2GC-06	NF1	ENST00000471572.2,ENST00000444181.2	chr17	29664834:29664898:29665019:29665157:29665721:29665823,	29665020	29665157	29665053	29665053	Nonsense_Mutation	C	T	p.Q2239*
SKCM	TCGA-EE-A2GC-06	NF1	ENST00000358273.4,ENST00000584328.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29664836:29664898:29665042:29665157:29665721:29665823,	29665043	29665157	29665053	29665053	Nonsense_Mutation	C	T	p.Q2239*
SKCM	TCGA-EE-A2GC-06	ITGA8	ENST00000378076.3	chr10	15634223:15634303:15639205:15639298:15646206:15646269,	15639206	15639298	15639292	15639292	Nonsense_Mutation	G	A	p.R709*
SKCM	TCGA-EE-A2GC-06	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25792076:25792196:25803904:25804084:25806162:25806374,	25803905	25804084	25803907	25803907	Nonsense_Mutation	G	A	p.Q652*
SKCM	TCGA-EE-A2GC-06	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708885	91708885	Nonsense_Mutation	C	T	p.Q2492*
SKCM	TCGA-EE-A2GC-06	FBXO44	ENST00000251547.5,ENST00000376768.1,ENST00000376762.4	chr1	11714966:11715009:11715862:11716157:11718323:11718421,	11715863	11716157	11716079	11716079	Nonsense_Mutation	C	T	p.Q63*
SKCM	TCGA-EE-A2GC-06	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82125919	82125919	Nonsense_Mutation	G	A	p.Q95*
SKCM	TCGA-EE-A2GC-06	LTBP1	ENST00000415140.2	chr2	33500975:33500990:33505105:33505225:33518226:33518349,33500975:33500990:33505105:33505225:33525517:33525640,	33505106	33505225	33505208	33505208	Nonsense_Mutation	G	A	p.W1032*
SKCM	TCGA-D9-A149-06	CHRNA3	ENST00000559658.1	chr15	78886271:78886353:78888881:78889074:78893594:78894606,	78888882	78889074	78889060	78889060	Nonsense_Mutation	C	T	p.W468*
SKCM	TCGA-D9-A149-06	CCDC74B	ENST00000409943.3,ENST00000392984.3,ENST00000310463.6	chr2	130897595:130897669:130897751:130897944:130898730:130898869,	130897752	130897944	130897892	130897892	Nonsense_Mutation	G	A	p.Q348*
SKCM	TCGA-D9-A149-06	DNAH3	ENST00000261383.3,ENST00000415178.1	chr16	20944475:20944829:20946669:20946807:20947970:20948175,	20946670	20946807	20946803	20946803	Nonsense_Mutation	C	T	p.W3955*
SKCM	TCGA-ER-A19F-06	BCCIP	ENST00000429863.2	chr10	127516126:127516207:127519988:127520176:127522340:127522515,	127519989	127520176	127520013	127520013	Nonsense_Mutation	C	T	p.Q146*
SKCM	TCGA-ER-A19F-06	RELL2	ENST00000520674.1	chr5	141019030:141019216:141019486:141019862:141019978:141020012,141018361:141018427:141019486:141019862:141019978:141020012,	141019487	141019862	141019704	141019704	Nonsense_Mutation	G	T	p.G241*
SKCM	TCGA-ER-A19F-06	ST3GAL6	ENST00000495376.1	chr3	98491656:98491760:98492763:98492827:98503788:98503820,98491656:98491760:98492763:98492827:98501701:98501761,98491656:98491760:98492763:98492827:98502406:98502583,	98492764	98492827	98492775	98492775	Nonsense_Mutation	C	T	p.R9*
SKCM	TCGA-ER-A19F-06	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39823046:39823565:39824368:39824545:39824812:39824936,	39824369	39824545	39824417	39824417	Nonsense_Mutation	C	T	p.Q3998*
SKCM	TCGA-ER-A19F-06	FADS2	ENST00000523235.1,ENST00000522056.1,ENST00000278840.4,ENST00000257261.6,ENST00000522359.2	chr11	61630753:61630850:61631178:61631258:61632623:61632749,	61631179	61631258	61631251	61631251	Nonsense_Mutation	G	T	p.E384*
SKCM	TCGA-ER-A19F-06	NLRC5	ENST00000538805.1,ENST00000262510.6,ENST00000538778.1,ENST00000540182.1,ENST00000545081.1,ENST00000538453.1,ENST00000308149.7,ENST00000538110.1,ENST00000539144.1,ENST00000539881.1,ENST00000543030.1,ENST00000436936.1,ENST00000541020.1	chr16	57075399:57075486:57075893:57075977:57077426:57077516,	57075894	57075977	57075940	57075940	Nonsense_Mutation	C	T	p.Q1026*
SKCM	TCGA-ER-A19F-06	SSH3	ENST00000532881.1,ENST00000376757.5,ENST00000308127.4,ENST00000308298.7	chr11	67074841:67074907:67075019:67075208:67075316:67075377,	67075020	67075208	67075030	67075030	Nonsense_Mutation	C	T	p.Q205*
SKCM	TCGA-ER-A19F-06	CFHR2	ENST00000367415.5	chr1	196912987:196913068:196918584:196918779:196920029:196920158,196912987:196913068:196918584:196918779:196919981:196920069,	196918585	196918779	196918756	196918756	Nonsense_Mutation	G	A	p.W77*
SKCM	TCGA-ER-A19F-06	CFHR2	ENST00000489703.1	chr1	196912987:196913068:196918565:196918779:196919981:196920069,	196918566	196918779	196918756	196918756	Nonsense_Mutation	G	A	p.W77*
SKCM	TCGA-ER-A19F-06	CFHR2	ENST00000485647.1	chr1	196912987:196913068:196918746:196918779:196919981:196920069,	196918747	196918779	196918756	196918756	Nonsense_Mutation	G	A	p.W77*
SKCM	TCGA-ER-A19F-06	ANKRD30A	ENST00000374660.1,ENST00000361713.1	chr10	37451703:37451776:37454021:37454083:37455532:37455623,	37454022	37454083	37454074	37454074	Nonsense_Mutation	G	A	p.W629*
SKCM	TCGA-ER-A19F-06	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5211600:5211779:5211975:5212261:5212347:5212502,	5211976	5212261	5212122	5212122	Nonsense_Mutation	G	A	p.Q1638*
SKCM	TCGA-ER-A19F-06	CLSTN2	ENST00000511524.1	chr3	139654028:139654325:139894792:139894915:140122470:140122666,	139894793	139894915	139894811	139894811	Nonsense_Mutation	G	A	p.W43*
SKCM	TCGA-FS-A4F9-06	GDPD5	ENST00000336898.3,ENST00000529721.1	chr11	75160561:75160655:75160929:75161028:75167801:75167861,	75160930	75161028	75160974	75160974	Nonsense_Mutation	G	A	p.Q6*
SKCM	TCGA-FS-A4F9-06	TPK1	ENST00000547966.1,ENST00000360057.3	chr7	144245583:144245695:144288515:144288662:144320258:144320354,	144288516	144288662	144288587	144288587	Nonsense_Mutation	G	A	p.Q27*
SKCM	TCGA-FS-A4F9-06	SGCG	ENST00000537476.1,ENST00000218867.3,ENST00000545013.1	chr13	23824768:23824856:23853497:23853617:23869553:23869626,	23853498	23853617	23853608	23853608	Nonsense_Mutation	C	T	p.R166*
SKCM	TCGA-FS-A4F9-06	RPL35A	ENST00000464167.1,ENST00000448864.1	chr3	197678029:197678182:197680873:197681018:197682620:197682688,	197680874	197681018	197680974	197680974	Nonsense_Mutation	C	T	p.R89*
SKCM	TCGA-EE-A3J8-06	ANXA3	ENST00000503570.2,ENST00000505805.1,ENST00000264908.6,ENST00000512884.1	chr4	79522663:79522722:79525430:79525553:79531209:79531517,	79525431	79525553	79525461	79525461	Nonsense_Mutation	C	T	p.R274*
SKCM	TCGA-EE-A3J8-06	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367117	105367117	Nonsense_Mutation	C	T	p.Q348*
SKCM	TCGA-EE-A3J8-06	RYK	ENST00000486725.1	chr3	133894773:133894883:133901845:133901915:133907680:133907767,	133901846	133901915	133901898	133901898	Nonsense_Mutation	G	A	p.Q185*
SKCM	TCGA-EE-A2MU-06	SEMA4G	ENST00000519649.1,ENST00000517724.1,ENST00000521006.1,ENST00000210633.3,ENST00000370250.4	chr10	102739878:102740101:102740334:102740450:102740578:102740677,	102740335	102740450	102740344	102740344	Nonsense_Mutation	G	A	p.W454*
SKCM	TCGA-EE-A2MU-06	GRIP1	ENST00000545666.1,ENST00000540433.1,ENST00000542309.1,ENST00000359742.4,ENST00000538211.1,ENST00000539540.1,ENST00000540854.1,ENST00000536215.1,ENST00000398016.3,ENST00000286445.7	chr12	66911728:66911756:66923610:66923694:66932857:66932888,	66923611	66923694	66923614	66923614	Nonsense_Mutation	G	A	p.R167*
SKCM	TCGA-EE-A2MU-06	EFCAB14	ENST00000371933.3	chr1	47173577:47173723:47181966:47182115:47183574:47184736,	47181967	47182115	47181973	47181973	Nonsense_Mutation	G	A	p.R110*
SKCM	TCGA-EE-A2MU-06	LY9	ENST00000368037.5,ENST00000368035.1,ENST00000368040.1,ENST00000263285.6	chr1	160784312:160784551:160786383:160786653:160788007:160788107,	160786384	160786653	160786540	160786540	Nonsense_Mutation	C	G	p.S410*
SKCM	TCGA-EE-A2MU-06	PCSK6	ENST00000561444.1,ENST00000348070.1,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000558716.1,ENST00000560921.1,ENST00000344273.2,ENST00000560271.1,ENST00000398181.2,ENST00000559417.1,ENST00000559678.1	chr15	101972194:101972305:101983760:101983865:102029578:102029640,	101983761	101983865	101983763	101983763	Nonsense_Mutation	G	A	p.Q133*
SKCM	TCGA-EE-A2MU-06	BTBD8	ENST00000342818.3,ENST00000540648.1,ENST00000370382.3	chr1	92568029:92568226:92573440:92573558:92595243:92595333,	92573441	92573558	92573483	92573483	Nonsense_Mutation	T	A	p.L196*
SKCM	TCGA-EE-A2MF-06	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634452	70634452	Nonsense_Mutation	G	A	p.Q230*
SKCM	TCGA-EE-A2MF-06	STAT6	ENST00000554764.1	chr12	57501448:57501526:57501945:57502082:57504892:57505157,57501448:57501526:57501945:57502082:57504911:57504975,57501043:57501097:57501945:57502082:57504911:57504975,	57501946	57502082	57501992	57501992	Nonsense_Mutation	G	A	p.Q24*
SKCM	TCGA-EE-A2MF-06	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115400064:115400118:115401167:115401332:115402363:115402431,	115401168	115401332	115401232	115401232	Nonsense_Mutation	G	A	p.W119*
SKCM	TCGA-EE-A2MF-06	BRPF3	ENST00000357641.6,ENST00000339717.7,ENST00000449261.2,ENST00000534400.1,ENST00000441123.1,ENST00000532330.1,ENST00000534694.1,ENST00000543502.1,ENST00000443324.2	chr6	36168182:36169547:36172434:36172591:36175089:36175125,	36172435	36172591	36172574	36172574	Nonsense_Mutation	C	T	p.Q530*
SKCM	TCGA-EE-A2MF-06	POU6F2	ENST00000559001.1,ENST00000451021.1,ENST00000518318.2,ENST00000520104.1,ENST00000517348.1,ENST00000403058.1,ENST00000524147.1	chr7	39125460:39125631:39243833:39243925:39246990:39247139,	39243834	39243925	39243878	39243878	Nonsense_Mutation	C	T	p.Q79*
SKCM	TCGA-EE-A2MF-06	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087301	109087301	Nonsense_Mutation	G	T	p.E506*
SKCM	TCGA-EE-A2MF-06	SMARCC2	ENST00000394023.3	chr12	56557128:56557549:56558086:56558152:56558431:56558515,	56558087	56558152	56558150	56558150	Nonsense_Mutation	G	A	p.Q1107*
SKCM	TCGA-EE-A2MF-06	NOP58	ENST00000472050.1,ENST00000264279.5,ENST00000488403.1,ENST00000492688.1	chr2	203139884:203139912:203142672:203142725:203147073:203147195,	203142673	203142725	203142701	203142701	Nonsense_Mutation	C	T	p.Q51*
SKCM	TCGA-D3-A3MR-06	MRO	ENST00000587291.1,ENST00000256425.2,ENST00000398439.3,ENST00000436348.2,ENST00000428869.2,ENST00000585524.1	chr18	48326416:48326513:48327718:48327874:48331523:48331706,	48327719	48327874	48327804	48327804	Nonsense_Mutation	C	T	p.W167*
SKCM	TCGA-D3-A3MR-06	CTSV	ENST00000538255.1,ENST00000259470.5	chr9	99798804:99799029:99799533:99799680:99799774:99799897,	99799534	99799680	99799644	99799644	Nonsense_Mutation	G	A	p.R96*
SKCM	TCGA-D3-A3MR-06	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681105	161681105	Nonsense_Mutation	C	T	p.R120*
SKCM	TCGA-D3-A3MR-06	FCRLA	ENST00000540926.1,ENST00000367953.3,ENST00000367959.2,ENST00000236938.6	chr1	161680549:161680702:161680997:161681264:161682874:161683242,161680549:161680702:161680997:161681264:161681723:161682008,	161680998	161681264	161681105	161681105	Nonsense_Mutation	C	T	p.R120*
SKCM	TCGA-D3-A3MR-06	PAN3	ENST00000399613.1,ENST00000282391.5,ENST00000380958.3	chr13	28855451:28855516:28862120:28862259:28866518:28866648,	28862121	28862259	28862197	28862197	Nonsense_Mutation	C	T	p.Q621*
SKCM	TCGA-D3-A3MR-06	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45849964:45850125:45852969:45853209:45855945:45856024,	45852970	45853209	45853043	45853043	Nonsense_Mutation	C	T	p.W1041*
SKCM	TCGA-D3-A3MR-06	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379267	39379267	Nonsense_Mutation	C	T	p.Q180*
SKCM	TCGA-D3-A3MR-06	SOX5	ENST00000546136.1,ENST00000537393.1,ENST00000309359.1,ENST00000545921.1,ENST00000451604.2,ENST00000396007.2	chr12	23696144:23696318:23699249:23699358:23716191:23716337,	23699250	23699358	23699316	23699316	Nonsense_Mutation	T	A	p.K498*
SKCM	TCGA-D3-A3MR-06	UBAP2L	ENST00000456325.1	chr1	154193422:154193451:154197559:154197689:154199757:154199835,154193442:154193516:154197559:154197689:154199757:154199835,154193803:154193872:154197559:154197689:154199757:154199835,	154197560	154197689	154197657	154197657	Nonsense_Mutation	C	T	p.Q20*
SKCM	TCGA-D3-A3MR-06	BCL7B	ENST00000223368.2,ENST00000411832.1	chr7	72957877:72957974:72966496:72966572:72971370:72971442,72954211:72954382:72966496:72966572:72971816:72971912,72957877:72957974:72966496:72966572:72971816:72971939,	72966497	72966572	72966521	72966521	Nonsense_Mutation	C	T	p.W48*
SKCM	TCGA-D3-A3MR-06	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233712230:233712281:233714971:233715119:233721502:233723318,	233714972	233715119	233715038	233715038	Nonsense_Mutation	C	T	p.Q1273*
SKCM	TCGA-EE-A3AD-06	PDE9A	ENST00000335512.4,ENST00000398227.3,ENST00000490803.1,ENST00000467403.1,ENST00000335440.6,ENST00000470987.1,ENST00000398229.3,ENST00000539837.1,ENST00000398225.3,ENST00000468805.1,ENST00000398224.3,ENST00000380328.2,ENST00000398234.3,ENST00000349112.3,ENST00000398232.3,ENST00000460905.1,ENST00000328862.6,ENST00000462571.1,ENST00000398236.3,ENST00000291539.6,ENST00000497805.1	chr21	44163885:44163970:44171225:44171307:44174099:44174174,	44171226	44171307	44171281	44171281	Nonsense_Mutation	C	T	p.R237*
SKCM	TCGA-EE-A3AD-06	SLC12A3	ENST00000563236.1,ENST00000262502.5,ENST00000566786.1,ENST00000438926.2	chr16	56916377:56916409:56917960:56918116:56919176:56919276,	56917961	56918116	56918052	56918052	Nonsense_Mutation	G	A	p.W587*
SKCM	TCGA-EE-A3AD-06	LARP1B	ENST00000326639.6,ENST00000503725.1,ENST00000264584.5,ENST00000507259.1,ENST00000354456.3,ENST00000506199.1	chr4	129121748:129121820:129127582:129127692:129128410:129128538,	129127583	129127692	129127653	129127653	Nonsense_Mutation	C	T	p.Q794*
SKCM	TCGA-WE-A8K5-06	CAPN9	ENST00000354537.1,ENST00000366666.2,ENST00000271971.2	chr1	230914718:230914879:230915924:230916082:230916245:230916454,	230915925	230916082	230915935	230915935	Nonsense_Mutation	G	A	p.W349*
SKCM	TCGA-WE-A8K5-06	NCAPD2	ENST00000539714.1,ENST00000315579.5	chr12	6604241:6604391:6618882:6618958:6619794:6619886,6604241:6604391:6618882:6618958:6619240:6619299,	6618883	6618958	6618900	6618900	Nonsense_Mutation	C	T	p.R49*
SKCM	TCGA-WE-A8K5-06	MAP3K11	ENST00000524848.1,ENST00000530153.1,ENST00000309100.3	chr11	65373416:65373552:65374161:65374275:65374740:65374984,	65374162	65374275	65374165	65374165	Nonsense_Mutation	G	A	p.Q534*
SKCM	TCGA-WE-A8K5-06	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156532925:156533104:156533344:156533458:156533548:156533616,	156533345	156533458	156533411	156533411	Nonsense_Mutation	G	A	p.Q185*
SKCM	TCGA-WE-A8K5-06	PTDSS1	ENST00000518776.1,ENST00000517309.1	chr8	97296336:97296381:97299249:97299374:97307325:97307484,	97299250	97299374	97299345	97299345	Nonsense_Mutation	C	T	p.R138*
SKCM	TCGA-WE-A8K5-06	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000329066.4,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3	chr2	1499778:1499969:1500366:1500537:1507719:1507851,	1500367	1500537	1500474	1500474	Nonsense_Mutation	C	T	p.Q775*
SKCM	TCGA-WE-A8K5-06	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645158	46645158	Nonsense_Mutation	G	A	p.R568*
SKCM	TCGA-WE-A8K5-06	POLQ	ENST00000264233.5	chr3	121212324:121212568:121215654:121215779:121217323:121217517,	121215655	121215779	121215718	121215718	Nonsense_Mutation	G	A	p.Q739*
SKCM	TCGA-WE-A8K5-06	HKR1	ENST00000544914.1	chr19	37815109:37815167:37838678:37838774:37853010:37853048,	37838679	37838774	37838737	37838737	Nonsense_Mutation	G	A	p.W92*
SKCM	TCGA-WE-A8K5-06	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77662962	77662962	Nonsense_Mutation	G	A	p.W1212*
SKCM	TCGA-EE-A3AB-06	LMBRD2	ENST00000296603.4	chr5	36117836:36118018:36122381:36122565:36122949:36123063,	36122382	36122565	36122395	36122395	Nonsense_Mutation	A	T	p.Y369*
SKCM	TCGA-EE-A3AB-06	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212515529:212515622:212519144:212519275:212520688:212520748,	212519145	212519275	212519229	212519229	Nonsense_Mutation	G	T	p.G220*
SKCM	TCGA-EE-A3AB-06	KRT79	ENST00000546453.1,ENST00000330553.5	chr12	53216799:53217020:53217670:53217796:53217981:53218146,	53217671	53217796	53217794	53217794	Nonsense_Mutation	A	C	p.Y341*
SKCM	TCGA-EE-A3AB-06	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25660144:25660340:25661352:25661553:25662172:25662307,	25661353	25661553	25661495	25661495	Nonsense_Mutation	A	T	p.L969*
SKCM	TCGA-EE-A3AB-06	SNX17	ENST00000537606.1,ENST00000233575.2	chr2	27594135:27594210:27596113:27596178:27596727:27596838,27595489:27595607:27596113:27596178:27596727:27596838,	27596114	27596178	27596119	27596119	Nonsense_Mutation	C	T	p.Q88*
SKCM	TCGA-EE-A3AB-06	CD164	ENST00000413644.2	chr6	109689381:109689528:109690124:109690220:109691613:109691670,	109690125	109690220	109690179	109690179	Nonsense_Mutation	G	A	p.R125*
SKCM	TCGA-ER-A2NE-06	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711916	89711916	Nonsense_Mutation	T	A	p.Y178*
SKCM	TCGA-ER-A2NE-06	SFI1	ENST00000486708.1,ENST00000400288.2,ENST00000432498.1,ENST00000524296.1,ENST00000382162.3	chr22	31927043:31927115:31942846:31942957:31946239:31946334,	31942847	31942957	31942914	31942914	Nonsense_Mutation	C	T	p.Q136*
SKCM	TCGA-WE-AA9Y-06	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
SKCM	TCGA-WE-AA9Y-06	SPTBN4	ENST00000595535.1,ENST00000338932.3,ENST00000352632.3,ENST00000598249.1,ENST00000344104.3	chr19	40978513:40978697:40993603:40993755:40995981:40996155,	40993604	40993755	40993747	40993747	Nonsense_Mutation	G	T	p.E105*
SKCM	TCGA-WE-AA9Y-06	DDX3X	ENST00000441189.2,ENST00000399959.2,ENST00000478993.1,ENST00000542215.1	chrX	41196661:41196718:41198288:41198336:41200736:41200869,	41198289	41198336	41198321	41198321	Nonsense_Mutation	C	T	p.R46*
SKCM	TCGA-ER-A1A1-06	CC2D1B	ENST00000450942.2	chr1	52825130:52825206:52825376:52825492:52825745:52825905,	52825377	52825492	52825463	52825463	Nonsense_Mutation	G	A	p.R286*
SKCM	TCGA-ER-A1A1-06	CC2D1B	ENST00000438831.1,ENST00000491136.2,ENST00000371586.2,ENST00000284376.3,ENST00000438021.1	chr1	52825130:52825206:52825376:52825555:52825745:52825868,	52825377	52825555	52825463	52825463	Nonsense_Mutation	G	A	p.R286*
SKCM	TCGA-ER-A1A1-06	CC2D1B	ENST00000460261.1	chr1	52825130:52825206:52825376:52825508:52825745:52825868,	52825377	52825508	52825463	52825463	Nonsense_Mutation	G	A	p.R286*
SKCM	TCGA-ER-A1A1-06	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130408572:130408851:130408972:130409260:130409451:130409739,	130408973	130409260	130409049	130409049	Nonsense_Mutation	A	T	p.Y1123*
SKCM	TCGA-D3-A3CF-06	EGF	ENST00000509793.1	chr4	110866228:110866431:110882022:110882145:110883018:110883141,	110882023	110882145	110882136	110882136	Nonsense_Mutation	C	T	p.R394*
SKCM	TCGA-FS-A1ZK-06	SERPING1	ENST00000378323.4	chr11	57365743:57365794:57367336:57367850:57369507:57369642,	57367337	57367850	57367838	57367838	Nonsense_Mutation	C	T	p.Q214*
SKCM	TCGA-FS-A1ZK-06	SERPING1	ENST00000378324.2	chr11	57365743:57365794:57367351:57367850:57369507:57369642,57365162:57365195:57367351:57367850:57369507:57369642,	57367352	57367850	57367838	57367838	Nonsense_Mutation	C	T	p.Q214*
SKCM	TCGA-FS-A1ZK-06	HTT	ENST00000355072.5	chr4	3088665:3088749:3101000:3101121:3105550:3105610,	3101001	3101121	3101017	3101017	Nonsense_Mutation	C	T	p.Q122*
SKCM	TCGA-FS-A1ZK-06	INTS1	ENST00000389470.4,ENST00000404767.3	chr7	1520977:1521124:1522181:1522343:1523377:1523489,	1522182	1522343	1522326	1522326	Nonsense_Mutation	G	A	p.Q1349*
SKCM	TCGA-FS-A1ZK-06	PPP3CC	ENST00000523620.1,ENST00000289963.8,ENST00000522034.1,ENST00000240139.5,ENST00000397775.3,ENST00000521651.1,ENST00000518852.1	chr8	22368598:22368744:22370805:22370945:22380003:22380081,	22370806	22370945	22370923	22370923	Nonsense_Mutation	C	T	p.R250*
SKCM	TCGA-FS-A1ZK-06	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450849	85450849	Nonsense_Mutation	C	T	p.Q760*
SKCM	TCGA-FS-A1ZK-06	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7581101	7581101	Nonsense_Mutation	C	T	p.Q1560*
SKCM	TCGA-FS-A1ZK-06	CD38	ENST00000502843.1	chr4	15818218:15818263:15835839:15835925:15839714:15839788,	15835840	15835925	15835868	15835868	Nonsense_Mutation	G	A	p.W176*
SKCM	TCGA-FS-A1ZK-06	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640943	36640943	Nonsense_Mutation	G	A	p.Q426*
SKCM	TCGA-FS-A1ZK-06	CCDC157	ENST00000338306.3,ENST00000405659.1	chr22	30765420:30765592:30766314:30766939:30767638:30767716,	30766315	30766939	30766447	30766447	Nonsense_Mutation	C	T	p.Q185*
SKCM	TCGA-FS-A1ZK-06	RFC1	ENST00000381897.1,ENST00000349703.2	chr4	39304356:39304494:39304679:39304771:39306433:39306548,	39304680	39304771	39304682	39304682	Nonsense_Mutation	G	A	p.Q735*
SKCM	TCGA-FS-A1ZK-06	CACUL1	ENST00000369151.3,ENST00000544392.1	chr10	120446109:120446153:120450776:120450915:120454652:120454742,	120450777	120450915	120450808	120450808	Nonsense_Mutation	G	A	p.Q332*
SKCM	TCGA-FS-A1ZK-06	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000272427.6	chr2	72742171:72742255:72786581:72786650:72802620:72802797,	72786582	72786650	72786608	72786608	Nonsense_Mutation	G	A	p.R297*
SKCM	TCGA-FS-A1ZK-06	ILDR1	ENST00000344209.5,ENST00000460554.1,ENST00000273691.3,ENST00000462014.1	chr3	121720154:121720301:121720591:121720711:121724090:121724240,	121720592	121720711	121720677	121720677	Nonsense_Mutation	C	T	p.W138*
SKCM	TCGA-FS-A1ZK-06	SLC38A8	ENST00000299709.3,ENST00000568178.1	chr16	84056398:84056494:84063098:84063156:84065471:84065573,	84063099	84063156	84063101	84063101	Nonsense_Mutation	G	A	p.Q230*
SKCM	TCGA-FS-A1ZK-06	FAM83A	ENST00000536633.1,ENST00000518448.1	chr8	124192398:124192469:124194265:124195576:124204042:124204210,	124194266	124195576	124195459	124195459	Nonsense_Mutation	G	A	p.W121*
SKCM	TCGA-BF-A9VF-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29342203:29342279:29344735:29344954:29356911:29356999,	29344736	29344954	29344905	29344905	Nonsense_Mutation	C	T	p.Q359*
SKCM	TCGA-D3-A8GL-06	ANO4	ENST00000392977.3,ENST00000392979.3,ENST00000550015.1,ENST00000299222.9	chr12	101505340:101505488:101510456:101510576:101514297:101514403,	101510457	101510576	101510497	101510497	Nonsense_Mutation	C	T	p.R796*
SKCM	TCGA-D3-A8GL-06	TACC1	ENST00000348567.4,ENST00000520973.1,ENST00000523239.1,ENST00000521866.1,ENST00000518809.1,ENST00000518415.1,ENST00000520615.1,ENST00000317827.4,ENST00000379931.3,ENST00000522752.1,ENST00000443286.2,ENST00000276520.8,ENST00000519416.1,ENST00000520611.1,ENST00000330691.6,ENST00000520340.1	chr8	38688642:38688695:38693679:38693805:38695987:38696025,	38693680	38693805	38693689	38693689	Nonsense_Mutation	G	T	p.E587*
SKCM	TCGA-D3-A8GL-06	RC3H1	ENST00000367694.2	chr1	173910402:173910518:173912579:173912726:173915613:173915746,	173912580	173912726	173912702	173912702	Nonsense_Mutation	G	A	p.Q1005*
SKCM	TCGA-D3-A8GL-06	RC3H1	ENST00000258349.4,ENST00000367696.2	chr1	173910402:173910518:173912579:173912753:173915613:173915746,	173912580	173912753	173912702	173912702	Nonsense_Mutation	G	A	p.Q1005*
SKCM	TCGA-D3-A8GL-06	SND1	ENST00000354725.3	chr7	127630999:127631109:127714553:127714742:127721411:127721447,	127714554	127714742	127714604	127714604	Nonsense_Mutation	G	A	p.W610*
SKCM	TCGA-D3-A8GL-06	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000361713.1	chr10	37422843:37422981:37425534:37425599:37430645:37431218,	37425535	37425599	37425584	37425584	Nonsense_Mutation	C	T	p.Q213*
SKCM	TCGA-D3-A8GL-06	BMP7	ENST00000450594.2,ENST00000395864.3	chr20	55777530:55777679:55803284:55803477:55840760:55840834,	55803285	55803477	55803436	55803436	Nonsense_Mutation	G	A	p.R154*
SKCM	TCGA-D3-A8GL-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57*
SKCM	TCGA-D3-A8GL-06	EPHX4	ENST00000370383.4	chr1	92498117:92498147:92508379:92508537:92511088:92511217,	92508380	92508537	92508477	92508477	Nonsense_Mutation	C	T	p.R139*
SKCM	TCGA-D3-A8GL-06	ZBTB44	ENST00000357899.4,ENST00000397753.1	chr11	130103202:130103277:130104050:130104168:130106687:130106988,	130104051	130104168	130104140	130104140	Nonsense_Mutation	G	A	p.Q533*
SKCM	TCGA-D3-A8GL-06	NEK7	ENST00000367383.1	chr1	198126250:198126406:198201682:198201767:198222169:198222208,	198201683	198201767	198201759	198201759	Nonsense_Mutation	C	T	p.Q17*
SKCM	TCGA-D3-A8GL-06	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639691	17639691	Nonsense_Mutation	G	A	p.Q488*
SKCM	TCGA-D3-A8GL-06	SPOCK3	ENST00000507370.1,ENST00000541354.1,ENST00000421836.2,ENST00000511269.1,ENST00000504953.1,ENST00000511905.1,ENST00000534949.1,ENST00000505187.1,ENST00000502821.1,ENST00000511531.1,ENST00000512681.1,ENST00000357154.3,ENST00000502330.1,ENST00000357545.4,ENST00000506886.1,ENST00000507137.1,ENST00000541637.1	chr4	167663147:167663210:167675658:167675880:167713320:167713440,	167675659	167675880	167675835	167675835	Nonsense_Mutation	C	T	p.W255*
SKCM	TCGA-D3-A8GL-06	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40795222	40795222	Nonsense_Mutation	G	A	p.Q173*
SKCM	TCGA-D3-A8GL-06	CDH11	ENST00000566827.1	chr16	65026817:65026937:65032464:65032759:65087706:65087831,	65032465	65032759	65032636	65032636	Nonsense_Mutation	G	A	p.R118*
SKCM	TCGA-D3-A8GL-06	ABCD4	ENST00000555617.1	chr14	74761850:74761901:74763035:74763152:74766250:74766378,	74763036	74763152	74763040	74763040	Nonsense_Mutation	G	A	p.Q180*
SKCM	TCGA-D3-A8GL-06	MVP	ENST00000452209.2,ENST00000570061.1,ENST00000357402.5,ENST00000566859.1,ENST00000395353.1	chr16	29847080:29847119:29848042:29848279:29851498:29851588,	29848043	29848279	29848107	29848107	Nonsense_Mutation	G	A	p.W60*
SKCM	TCGA-D3-A8GL-06	PSPC1	ENST00000492741.1,ENST00000338910.4,ENST00000471658.1	chr13	20315704:20315789:20325410:20325607:20333462:20333558,	20325411	20325607	20325516	20325516	Nonsense_Mutation	G	A	p.Q288*
SKCM	TCGA-D3-A3C8-06	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469888	47469888	Nonsense_Mutation	G	A	p.R52*
SKCM	TCGA-D3-A3C8-06	VPS35	ENST00000568784.2,ENST00000299138.7	chr16	46693588:46694563:46695629:46695773:46696154:46696394,	46695630	46695773	46695716	46695716	Nonsense_Mutation	G	A	p.Q709*
SKCM	TCGA-D3-A3C8-06	TMPRSS2	ENST00000424093.1	chr21	42852402:42852529:42861433:42861520:42866282:42866505,	42861434	42861520	42861441	42861441	Nonsense_Mutation	C	T	p.W143*
SKCM	TCGA-D3-A3C8-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
SKCM	TCGA-D3-A3C8-06	WDR88	ENST00000355868.3,ENST00000361680.2	chr19	33642086:33642216:33647260:33647448:33651319:33651402,	33647261	33647448	33647373	33647373	Nonsense_Mutation	C	T	p.R308*
SKCM	TCGA-D3-A3C8-06	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000423620.2	chr8	95680176:95680478:95683680:95683899:95686535:95686722,	95683681	95683899	95683690	95683690	Nonsense_Mutation	C	T	p.R415*
SKCM	TCGA-D3-A3C8-06	NCF2	ENST00000367535.3,ENST00000367536.1	chr1	183542319:183542427:183543621:183543756:183546733:183546842,	183543622	183543756	183543712	183543712	Nonsense_Mutation	C	T	p.W137*
SKCM	TCGA-D3-A3C8-06	FBXO3	ENST00000534136.1,ENST00000265651.3,ENST00000526785.1,ENST00000530013.1,ENST00000530401.1,ENST00000448981.2	chr11	33776000:33776046:33777316:33777521:33780032:33780147,	33777317	33777521	33777442	33777442	Nonsense_Mutation	G	A	p.Q180*
SKCM	TCGA-D3-A3C8-06	CALCR	ENST00000360249.4,ENST00000394441.1,ENST00000359558.2,ENST00000426151.1,ENST00000421592.1	chr7	93067521:93067582:93072915:93073069:93090132:93090259,	93072916	93073069	93073039	93073039	Nonsense_Mutation	G	A	p.Q261*
SKCM	TCGA-D3-A3C8-06	MS4A3	ENST00000278865.3	chr11	59828633:59828789:59829940:59830078:59831734:59831791,	59829941	59830078	59830065	59830065	Nonsense_Mutation	G	A	p.W94*
SKCM	TCGA-D3-A3C8-06	A2M	ENST00000318602.7,ENST00000404455.2	chr12	9264754:9264807:9264972:9265132:9265955:9266135,	9264973	9265132	9265009	9265009	Nonsense_Mutation	G	A	p.Q132*
SKCM	TCGA-D3-A3C8-06	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123983748	123983748	Nonsense_Mutation	G	A	p.Q777*
SKCM	TCGA-D3-A3C8-06	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829865	72829865	Nonsense_Mutation	C	T	p.W2239*
SKCM	TCGA-FS-A1ZA-06	OGDHL	ENST00000432695.1,ENST00000374103.4,ENST00000419399.1	chr10	50953458:50953542:50953843:50954023:50954795:50954879,	50953844	50954023	50953880	50953880	Nonsense_Mutation	C	T	p.W480*
SKCM	TCGA-FS-A1ZA-06	MR1	ENST00000438435.2,ENST00000282990.6	chr1	181019281:181019422:181022708:181022813:181024360:181024420,	181022709	181022813	181022797	181022797	Nonsense_Mutation	G	A	p.W323*
SKCM	TCGA-FS-A1ZA-06	COMMD10	ENST00000274458.4,ENST00000515539.1	chr5	115428241:115428397:115469764:115469875:115627213:115627273,	115469765	115469875	115469813	115469813	Nonsense_Mutation	C	T	p.Q150*
SKCM	TCGA-FS-A1ZA-06	NSUN6	ENST00000377304.4	chr10	18837040:18837166:18840751:18840900:18874877:18875022,	18840752	18840900	18840781	18840781	Nonsense_Mutation	G	A	p.Q348*
SKCM	TCGA-FS-A1ZA-06	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44986659:44986784:45000622:45000952:45017424:45017658,	45000623	45000952	45000901	45000901	Nonsense_Mutation	G	A	p.R10*
SKCM	TCGA-FS-A1ZA-06	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680362	18680362	Nonsense_Mutation	C	T	p.Q397*
SKCM	TCGA-FS-A1ZA-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101944	168101944	Nonsense_Mutation	C	T	p.R1348*
SKCM	TCGA-FS-A1ZA-06	GFAP	ENST00000435360.2,ENST00000588640.1,ENST00000586793.1,ENST00000253408.5	chr17	42987986:42988026:42988603:42988824:42989039:42989164,	42988604	42988824	42988759	42988759	Nonsense_Mutation	A	C	p.Y324*
SKCM	TCGA-FS-A1ZA-06	PARM1	ENST00000307428.7	chr4	75858325:75858580:75937634:75938360:75959092:75959171,	75937635	75938360	75937638	75937638	Nonsense_Mutation	G	A	p.W16*
SKCM	TCGA-FS-A1ZA-06	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000396821.3,ENST00000432525.1,ENST00000381633.3	chr22	38890890:38891051:38891800:38891942:38894089:38894155,	38891801	38891942	38891816	38891816	Nonsense_Mutation	G	A	p.R289*
SKCM	TCGA-FS-A1ZA-06	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909488	24909488	Nonsense_Mutation	G	A	p.R446*
SKCM	TCGA-FS-A1ZA-06	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000554874.1,ENST00000381232.3	chr14	72191386:72191552:72196771:72197018:72200382:72200529,	72196772	72197018	72197010	72197010	Nonsense_Mutation	C	A	p.S1639*
SKCM	TCGA-FS-A1ZA-06	MBOAT7	ENST00000391754.1,ENST00000245615.1,ENST00000437868.1,ENST00000338624.6,ENST00000431666.2	chr19	54682481:54682658:54684489:54684850:54687403:54687517,	54684490	54684850	54684597	54684597	Nonsense_Mutation	C	T	p.W249*
SKCM	TCGA-FS-A1ZA-06	FAM13C	ENST00000422313.2,ENST00000442566.3,ENST00000513059.1,ENST00000468840.2,ENST00000277705.6,ENST00000373868.2,ENST00000435852.2,ENST00000373867.3	chr10	61022193:61022405:61023844:61023926:61028312:61028451,	61023845	61023926	61023882	61023882	Nonsense_Mutation	C	T	p.W246*
SKCM	TCGA-EB-A4IS-01	PPFIBP2	ENST00000299492.4,ENST00000527790.1,ENST00000525597.1,ENST00000529575.1,ENST00000533792.1	chr11	7618467:7618604:7618790:7618904:7631521:7631547,7614362:7614455:7618790:7618904:7631521:7631547,	7618791	7618904	7618866	7618866	Nonsense_Mutation	C	T	p.Q150*
SKCM	TCGA-EB-A4IS-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000583809.1,ENST00000581231.1,ENST00000583054.1,ENST00000317931.7	chr18	6244565:6244587:6263945:6264037:6301901:6301956,	6263946	6264037	6264003	6264003	Nonsense_Mutation	C	T	p.W54*
SKCM	TCGA-EB-A4IS-01	RPL22	ENST00000471204.1,ENST00000465387.1,ENST00000480661.1,ENST00000497965.1,ENST00000234875.4	chr1	6246782:6246876:6252989:6253114:6257711:6257740,	6252990	6253114	6253009	6253009	Nonsense_Mutation	C	A	p.E75*
SKCM	TCGA-EB-A4IS-01	WT1	ENST00000527775.1,ENST00000527882.1,ENST00000332351.3,ENST00000448076.3,ENST00000379079.2	chr11	32421493:32421590:32438035:32438086:32439122:32439143,	32438036	32438086	32438053	32438053	Nonsense_Mutation	C	T	p.W328*
SKCM	TCGA-EB-A4IS-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476005	32476005	Nonsense_Mutation	G	A	p.R310*
SKCM	TCGA-EB-A4IS-01	YBX2	ENST00000007699.5	chr17	7194411:7194501:7195344:7195378:7196793:7196857,	7195345	7195378	7195347	7195347	Nonsense_Mutation	G	A	p.Q123*
SKCM	TCGA-FR-A44A-06	TBATA	ENST00000299290.1	chr10	72533979:72534113:72536908:72537091:72538312:72538392,72534944:72535026:72536908:72537091:72538312:72538392,	72536909	72537091	72536920	72536920	Nonsense_Mutation	G	A	p.Q227*
SKCM	TCGA-FR-A44A-06	C8A	ENST00000361249.3	chr1	57341734:57341882:57347117:57347307:57349153:57349285,	57347118	57347307	57347208	57347208	Nonsense_Mutation	G	A	p.W185*
SKCM	TCGA-FR-A44A-06	RPN2	ENST00000237530.6,ENST00000456102.1,ENST00000373632.4,ENST00000373622.5	chr20	35833169:35833304:35835675:35835852:35838449:35838553,	35835676	35835852	35835688	35835688	Nonsense_Mutation	C	T	p.Q235*
SKCM	TCGA-FR-A44A-06	RARB	ENST00000480001.1	chr3	25622036:25622213:25636010:25636169:25637910:25637946,	25636011	25636169	25636062	25636062	Nonsense_Mutation	T	A	p.L348*
SKCM	TCGA-FR-A44A-06	TBC1D19	ENST00000512840.1,ENST00000264866.4,ENST00000505206.1,ENST00000502873.1,ENST00000504442.1,ENST00000511789.1	chr4	26641762:26641809:26661218:26661329:26667954:26668027,	26661219	26661329	26661294	26661294	Nonsense_Mutation	C	T	p.Q186*
SKCM	TCGA-D3-A2J7-06	GALNT14	ENST00000324589.5,ENST00000349752.5,ENST00000475320.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31133662:31133925:31135088:31135208:31152260:31152353,31133662:31133925:31135088:31135208:31146984:31147129,	31135089	31135208	31135094	31135094	Nonsense_Mutation	G	A	p.R499*
SKCM	TCGA-D3-A2J7-06	ADAM19	ENST00000257527.4,ENST00000517905.1,ENST00000430702.2,ENST00000394020.1	chr5	156936308:156936475:156940441:156940513:156945830:156945896,	156940442	156940513	156940501	156940501	Nonsense_Mutation	G	A	p.R227*
SKCM	TCGA-D3-A2J7-06	ADAM19	ENST00000517951.1	chr5	156936308:156936475:156940431:156940513:156945830:156945896,	156940432	156940513	156940501	156940501	Nonsense_Mutation	G	A	p.R227*
SKCM	TCGA-D3-A2J7-06	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684173	77684173	Nonsense_Mutation	C	T	p.R1305*
SKCM	TCGA-BF-A1PX-01	IL36B	ENST00000259213.4	chr2	113779667:113780354:113783679:113783809:113786515:113786655,	113783680	113783809	113783768	113783768	Nonsense_Mutation	C	T	p.W101*
SKCM	TCGA-YG-AA3O-06	GATA3	ENST00000379328.3	chr10	8097249:8097859:8100267:8100804:8105955:8106101,	8100268	8100804	8100361	8100361	Nonsense_Mutation	G	A	p.W112*
SKCM	TCGA-YG-AA3O-06	CA8	ENST00000317995.4	chr8	61099905:61102544:61121308:61121478:61135207:61135320,	61121309	61121478	61121466	61121466	Nonsense_Mutation	G	A	p.R251*
SKCM	TCGA-YG-AA3O-06	ASTN2	ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119976636:119977021:120053604:120053792:120176774:120177216,	120053605	120053792	120053753	120053753	Nonsense_Mutation	C	T	p.W161*
SKCM	TCGA-YG-AA3O-06	USP54	ENST00000319786.7,ENST00000498143.1,ENST00000461520.1,ENST00000497106.1,ENST00000339859.4,ENST00000394811.2,ENST00000408019.1	chr10	75301390:75301496:75302560:75302643:75302775:75302889,	75302561	75302643	75302595	75302595	Nonsense_Mutation	G	A	p.Q180*
SKCM	TCGA-YG-AA3O-06	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107618491:107618612:107621053:107621256:107626466:107626530,	107621054	107621256	107621131	107621131	Nonsense_Mutation	G	A	p.R292*
SKCM	TCGA-YG-AA3O-06	MYO9A	ENST00000561618.1,ENST00000564699.1,ENST00000424560.1,ENST00000568042.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72141185:72141309:72142376:72142508:72143593:72143699,	72142377	72142508	72142483	72142483	Nonsense_Mutation	G	A	p.R2203*
SKCM	TCGA-YG-AA3O-06	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	137872693:137872863:137917782:137917938:137928310:137928485,	137917783	137917938	137917892	137917892	Nonsense_Mutation	G	A	p.W493*
SKCM	TCGA-YG-AA3O-06	DIS3L	ENST00000530537.1,ENST00000319194.5,ENST00000319212.4	chr15	66615830:66615923:66618168:66618702:66621307:66621462,	66618169	66618702	66618248	66618248	Nonsense_Mutation	C	T	p.R500*
SKCM	TCGA-YG-AA3O-06	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99076920:99077052:99080525:99080651:99093185:99093347,	99080526	99080651	99080553	99080553	Nonsense_Mutation	C	T	p.R736*
SKCM	TCGA-YG-AA3O-06	PLXNB3	ENST00000538282.1,ENST00000361971.5,ENST00000538776.1,ENST00000538966.1	chrX	153036419:153036536:153036764:153036858:153036940:153037110,	153036765	153036858	153036783	153036783	Nonsense_Mutation	C	T	p.Q781*
SKCM	TCGA-EE-A29M-06	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121758562:121759434:121767663:121767777,121739487:121739560:121758562:121759434:121761046:121761226,	121758563	121759434	121758579	121758579	Nonsense_Mutation	G	A	p.W96*
SKCM	TCGA-EE-A29M-06	ADCYAP1R1	ENST00000409363.1	chr7	31104446:31104552:31117605:31117713:31123755:31123865,	31117606	31117713	31117622	31117622	Nonsense_Mutation	G	A	p.W58*
SKCM	TCGA-EE-A29M-06	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545682	196545682	Nonsense_Mutation	C	T	p.R306*
SKCM	TCGA-EE-A29M-06	FAM86C1	ENST00000359244.4	chr11	71500828:71500891:71507062:71507212:71510606:71511145,71504425:71504527:71507062:71507212:71510606:71511145,	71507063	71507212	71507081	71507081	Nonsense_Mutation	A	T	p.K94*
SKCM	TCGA-EE-A29M-06	FAM86C1	ENST00000528685.1	chr11	71500828:71500891:71507062:71507354:71510606:71511145,	71507063	71507354	71507081	71507081	Nonsense_Mutation	A	T	p.K94*
SKCM	TCGA-EE-A29M-06	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110193	120110193	Nonsense_Mutation	C	T	p.R83*
SKCM	TCGA-EE-A29M-06	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000377246.3	chr13	78188030:78188090:78191733:78191793:78191937:78191997,	78191734	78191793	78191759	78191759	Nonsense_Mutation	A	T	p.K451*
SKCM	TCGA-EE-A29M-06	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35310463:35310778:35313895:35313986:35366943:35366990,	35313896	35313986	35313969	35313969	Nonsense_Mutation	C	T	p.R384*
SKCM	TCGA-EE-A29M-06	SYTL1	ENST00000483926.1,ENST00000543823.1,ENST00000490170.1,ENST00000318074.5	chr1	27677946:27678046:27679773:27679979:27680203:27680421,	27679774	27679979	27679920	27679920	Nonsense_Mutation	G	A	p.W497*
SKCM	TCGA-EE-A29M-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749422	196749422	Nonsense_Mutation	G	A	p.R1884*
SKCM	TCGA-EE-A29M-06	ARMC1	ENST00000276569.3	chr8	66517497:66517572:66517656:66517773:66525478:66525668,	66517657	66517773	66517710	66517710	Nonsense_Mutation	G	A	p.Q177*
SKCM	TCGA-EE-A29M-06	FAM3D	ENST00000483787.1	chr3	58635041:58635065:58639400:58639508:58641277:58641328,58635041:58635062:58639400:58639508:58641277:58641328,	58639401	58639508	58639463	58639463	Nonsense_Mutation	C	T	p.W20*
SKCM	TCGA-EE-A29M-06	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297777	139297777	Nonsense_Mutation	C	T	p.W40*
SKCM	TCGA-EE-A29M-06	DENND1A	ENST00000479305.1,ENST00000542603.1,ENST00000497135.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000373618.1,ENST00000394215.2	chr9	126217017:126217058:126219626:126219714:126220071:126220176,	126219627	126219714	126219702	126219702	Nonsense_Mutation	G	A	p.R371*
SKCM	TCGA-EE-A29M-06	CHI3L1	ENST00000255409.3	chr1	203151858:203151980:203152768:203152919:203153703:203153760,	203152769	203152919	203152894	203152894	Nonsense_Mutation	G	A	p.Q114*
SKCM	TCGA-EE-A29M-06	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58001367	58001367	Nonsense_Mutation	C	T	p.Q241*
SKCM	TCGA-EE-A29M-06	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58001367	58001367	Nonsense_Mutation	C	T	p.Q241*
SKCM	TCGA-EE-A29M-06	NFIC	ENST00000590282.1,ENST00000341919.3,ENST00000443272.2	chr19	3359680:3359683:3381709:3382241:3425103:3425145,3366583:3366664:3381709:3382241:3425103:3425145,	3381710	3382241	3381895	3381895	Nonsense_Mutation	G	A	p.W63*
SKCM	TCGA-EE-A29M-06	RNH1	ENST00000529115.1,ENST00000524464.1,ENST00000397604.3,ENST00000531149.1	chr11	500634:500654:502061:502181:506608:506759,500634:500654:502061:502181:507112:507195,	502062	502181	502132	502132	Nonsense_Mutation	G	A	p.Q11*
SKCM	TCGA-EE-A29M-06	RNH1	ENST00000527485.1,ENST00000397614.1	chr11	500634:500654:502061:502249:507112:507195,500634:500654:502061:502249:506608:506759,	502062	502249	502132	502132	Nonsense_Mutation	G	A	p.Q11*
SKCM	TCGA-EE-A29M-06	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660215	77660215	Nonsense_Mutation	G	T	p.E297*
SKCM	TCGA-EE-A29M-06	A1CF	ENST00000373997.3,ENST00000282641.2,ENST00000395495.1	chr10	52610424:52610567:52619601:52619745:52645340:52645387,52603747:52603882:52619601:52619745:52623792:52623840,	52619602	52619745	52619604	52619604	Nonsense_Mutation	G	A	p.Q33*
SKCM	TCGA-EE-A29M-06	TP53I3	ENST00000238721.4,ENST00000335934.4,ENST00000407482.1,ENST00000313482.4,ENST00000413037.1	chr2	24303688:24303901:24305754:24306022:24307058:24307181,	24305755	24306022	24305773	24305773	Nonsense_Mutation	G	A	p.Q130*
SKCM	TCGA-EE-A29M-06	UPF3B	ENST00000276201.2	chrX	118972329:118972490:118974608:118974647:118975038:118975219,	118974609	118974647	118974617	118974617	Nonsense_Mutation	G	A	p.Q280*
SKCM	TCGA-EE-A29M-06	UPF3B	ENST00000478840.1	chrX	118972329:118972490:118974556:118974647:118975038:118975219,	118974557	118974647	118974617	118974617	Nonsense_Mutation	G	A	p.Q280*
SKCM	TCGA-EE-A29M-06	GALC	ENST00000474294.2,ENST00000554916.1,ENST00000544807.2,ENST00000261304.2,ENST00000393569.2,ENST00000393568.4	chr14	88442701:88442832:88448548:88448587:88450737:88450877,	88448549	88448587	88448555	88448555	Nonsense_Mutation	A	T	p.Y205*
SKCM	TCGA-EE-A29M-06	HAUS4	ENST00000342454.8,ENST00000555986.1,ENST00000490506.1,ENST00000541587.1,ENST00000206474.7,ENST00000555367.1,ENST00000555040.1	chr14	23416809:23416940:23417076:23417222:23419522:23419619,	23417077	23417222	23417130	23417130	Nonsense_Mutation	G	A	p.Q219*
SKCM	TCGA-ER-A2ND-06	TINAG	ENST00000259782.4	chr6	54208023:54208147:54212164:54212315:54214513:54214694,	54212165	54212315	54212203	54212203	Nonsense_Mutation	C	T	p.R263*
SKCM	TCGA-YG-AA3N-01	DMKN	ENST00000462126.1,ENST00000595571.1	chr19	35996619:35996667:35996840:35996951:36001085:36001113,	35996841	35996951	35996844	35996844	Nonsense_Mutation	C	T	p.W361*
SKCM	TCGA-YG-AA3N-01	DMKN	ENST00000467637.1,ENST00000483855.1,ENST00000424570.2,ENST00000493979.1	chr19	35996619:35996667:35996840:35996888:36001085:36001113,35996619:35996667:35996840:35996888:36000812:36000863,35996619:35996667:35996840:35996888:35999106:35999142,	35996841	35996888	35996844	35996844	Nonsense_Mutation	C	T	p.W361*
SKCM	TCGA-YG-AA3N-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823868	114823868	Nonsense_Mutation	C	T	p.W454*
SKCM	TCGA-YG-AA3N-01	CPA6	ENST00000297770.4	chr8	68340281:68340366:68346272:68346475:68396002:68396093,	68346273	68346475	68346383	68346383	Nonsense_Mutation	G	A	p.R311*
SKCM	TCGA-YG-AA3N-01	ITSN1	ENST00000399367.3,ENST00000399326.3,ENST00000381285.4,ENST00000381318.3	chr21	35239536:35239635:35247657:35247825:35254546:35254759,	35247658	35247825	35247788	35247788	Nonsense_Mutation	G	A	p.W1435*
SKCM	TCGA-YG-AA3N-01	KLKB1	ENST00000511608.1,ENST00000264690.6,ENST00000511406.1	chr4	187177145:187177241:187178379:187178519:187179174:187179446,	187178380	187178519	187178388	187178388	Nonsense_Mutation	C	T	p.Q532*
SKCM	TCGA-YG-AA3N-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830330	61830330	Nonsense_Mutation	G	A	p.Q3437*
SKCM	TCGA-YG-AA3N-01	MVP	ENST00000570234.1,ENST00000563915.1,ENST00000357402.5,ENST00000395353.1	chr16	29841835:29841995:29842198:29842394:29845053:29845071,	29842199	29842394	29842281	29842281	Nonsense_Mutation	C	T	p.Q70*
SKCM	TCGA-YG-AA3N-01	SPAG11B	ENST00000297498.2	chr8	7308085:7308422:7308645:7308721:7309780:7309887,7308344:7308422:7308645:7308721:7320228:7320379,	7308646	7308721	7308698	7308698	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-YG-AA3N-01	JAM2	ENST00000400532.1,ENST00000312957.5,ENST00000480456.1	chr21	27056194:27056260:27062177:27062285:27066067:27066220,	27062178	27062285	27062232	27062232	Nonsense_Mutation	G	A	p.W63*
SKCM	TCGA-YG-AA3N-01	CCDC146	ENST00000478101.1,ENST00000461259.1,ENST00000415740.2,ENST00000285871.4,ENST00000431197.1	chr7	76916756:76916894:76922268:76922517:76923979:76924232,	76922269	76922517	76922473	76922473	Nonsense_Mutation	C	T	p.R874*
SKCM	TCGA-YG-AA3N-01	AMOTL1	ENST00000433060.2,ENST00000317829.8	chr11	94532555:94533477:94554695:94554987:94563215:94563315,	94554696	94554987	94554722	94554722	Nonsense_Mutation	C	G	p.S383*
SKCM	TCGA-YG-AA3N-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176526064	176526064	Nonsense_Mutation	G	A	p.W202*
SKCM	TCGA-YG-AA3N-01	RNLS	ENST00000371947.3,ENST00000331772.4,ENST00000437752.1	chr10	90074269:90074398:90122308:90122482:90332659:90332818,	90122309	90122482	90122432	90122432	Nonsense_Mutation	G	A	p.R193*
SKCM	TCGA-YG-AA3N-01	NNMT	ENST00000535401.1,ENST00000299964.3	chr11	114167149:114167432:114168672:114168880:114182766:114182930,	114168673	114168880	114168838	114168838	Nonsense_Mutation	G	A	p.W107*
SKCM	TCGA-YG-AA3N-01	TEK	ENST00000406359.4,ENST00000519097.1,ENST00000380036.4	chr9	27217685:27217756:27218774:27218815:27220046:27220143,	27218775	27218815	27218798	27218798	Nonsense_Mutation	G	A	p.W1029*
SKCM	TCGA-YG-AA3N-01	KIAA1324L	ENST00000394714.2,ENST00000297222.6,ENST00000450689.2,ENST00000423294.1,ENST00000416314.1	chr7	86539127:86539317:86541387:86541561:86542256:86542381,	86541388	86541561	86541510	86541510	Nonsense_Mutation	G	A	p.Q683*
SKCM	TCGA-YG-AA3N-01	NR3C1	ENST00000503201.1	chr5	142693566:142693733:142779220:142780417:142783940:142784035,	142779221	142780417	142779366	142779366	Nonsense_Mutation	G	A	p.Q347*
SKCM	TCGA-YG-AA3N-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139945386:139945581:139945662:139945822:139945961:139946112,	139945663	139945822	139945722	139945722	Nonsense_Mutation	G	A	p.Q163*
SKCM	TCGA-YG-AA3N-01	TGFB2	ENST00000366929.4	chr1	218520379:218520389:218536675:218536759:218578510:218578674,	218536676	218536759	218536709	218536709	Nonsense_Mutation	C	G	p.S127*
SKCM	TCGA-YG-AA3N-01	CUL4B	ENST00000336592.6,ENST00000497616.1,ENST00000404115.3,ENST00000371322.5	chrX	119666276:119666449:119668335:119668441:119669684:119669798,	119668336	119668441	119668411	119668411	Nonsense_Mutation	G	A	p.Q731*
SKCM	TCGA-YG-AA3N-01	LCK	ENST00000333070.4,ENST00000469765.1,ENST00000469956.1,ENST00000336890.5	chr1	32741549:32741664:32741937:32742090:32742207:32742387,	32741938	32742090	32742008	32742008	Nonsense_Mutation	G	A	p.W234*
SKCM	TCGA-YG-AA3N-01	NCOR1	ENST00000460276.1	chr17	16068292:16068475:16075116:16075334:16089867:16090001,	16075117	16075334	16075194	16075194	Nonsense_Mutation	G	A	p.Q120*
SKCM	TCGA-YG-AA3N-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000436828.1,ENST00000395851.1,ENST00000585296.1,ENST00000268712.3	chr17	16068292:16068475:16075116:16075309:16089867:16090001,	16075117	16075309	16075194	16075194	Nonsense_Mutation	G	A	p.Q120*
SKCM	TCGA-YG-AA3N-01	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231825	230231825	Nonsense_Mutation	C	T	p.W622*
SKCM	TCGA-YG-AA3N-01	PCBD2	ENST00000512783.1,ENST00000504352.1	chr5	134240862:134240913:134246024:134246156:134294729:134294785,	134246025	134246156	134246052	134246052	Nonsense_Mutation	G	T	p.E38*
SKCM	TCGA-YG-AA3N-01	CPS1	ENST00000233072.5,ENST00000451903.2,ENST00000430249.2	chr2	211521248:211521356:211523322:211523412:211525208:211525379,	211523323	211523412	211523383	211523383	Nonsense_Mutation	C	T	p.Q1243*
SKCM	TCGA-YG-AA3N-01	SAP130	ENST00000259235.3,ENST00000357702.5	chr2	128744358:128744536:128747137:128747440:128750760:128750882,	128747138	128747440	128747330	128747330	Nonsense_Mutation	G	A	p.R556*
SKCM	TCGA-YG-AA3N-01	TRPM3	ENST00000377105.1,ENST00000357533.2,ENST00000408909.2,ENST00000396280.5	chr9	73240106:73240247:73240397:73240433:73250126:73250177,	73240398	73240433	73240410	73240410	Nonsense_Mutation	C	T	p.W399*
SKCM	TCGA-BF-A3DM-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6,ENST00000422127.1	chr1	228475761:228476025:228476325:228476589:228479598:228479862,	228476326	228476589	228476428	228476428	Nonsense_Mutation	G	A	p.W3822*
SKCM	TCGA-BF-A3DM-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37729818	37729818	Nonsense_Mutation	A	T	p.C834*
SKCM	TCGA-BF-A3DM-01	LARP4	ENST00000347328.5	chr12	50835372:50835426:50848096:50848200:50854917:50855130,	50848097	50848200	50848181	50848181	Nonsense_Mutation	C	T	p.R368*
SKCM	TCGA-BF-A3DM-01	CUL7	ENST00000478630.1,ENST00000535468.1,ENST00000265348.3	chr6	43013973:43014145:43014248:43014339:43014617:43014845,	43014249	43014339	43014252	43014252	Nonsense_Mutation	G	A	p.Q913*
SKCM	TCGA-D9-A4Z3-01	UBE3D	ENST00000430071.2,ENST00000237186.6,ENST00000369747.3,ENST00000509102.1	chr6	83602743:83602761:83667030:83667169:83728691:83728855,	83667031	83667169	83667033	83667033	Nonsense_Mutation	G	A	p.Q383*
SKCM	TCGA-D9-A4Z3-01	RBM42	ENST00000262633.4,ENST00000589871.1,ENST00000360475.4,ENST00000592202.1,ENST00000588161.1	chr19	36125157:36125275:36128059:36128254:36128343:36128546,	36128060	36128254	36128155	36128155	Nonsense_Mutation	A	T	p.K411*
SKCM	TCGA-D9-A4Z3-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184930856	184930856	Nonsense_Mutation	C	T	p.Q289*
SKCM	TCGA-D9-A4Z3-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073649	197073649	Nonsense_Mutation	G	A	p.R1578*
SKCM	TCGA-D9-A4Z3-01	C9	ENST00000467285.1	chr5	39341657:39341802:39342192:39342298:39364489:39364597,	39342193	39342298	39342232	39342232	Nonsense_Mutation	C	T	p.W48*
SKCM	TCGA-D9-A4Z3-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000413211.1,ENST00000360817.5,ENST00000403949.1,ENST00000423384.1,ENST00000443875.1	chr12	7169142:7169221:7169778:7169986:7170193:7170282,	7169779	7169986	7169808	7169808	Nonsense_Mutation	G	A	p.W12*
SKCM	TCGA-D3-A1Q6-06	MCOLN1	ENST00000601003.1,ENST00000394321.5	chr19	7587572:7587667:7589846:7590052:7591324:7591492,	7589847	7590052	7589984	7589984	Nonsense_Mutation	C	T	p.R57*
SKCM	TCGA-D3-A1Q6-06	YLPM1	ENST00000238571.3,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7	chr14	75269258:75269379:75276082:75276500:75276612:75276705,	75276083	75276500	75276309	75276309	Nonsense_Mutation	G	A	p.W1583*
SKCM	TCGA-D3-A1Q6-06	HNF4A	ENST00000316673.4,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000316099.4	chr20	43048360:43048516:43052657:43052894:43056974:43057097,	43052658	43052894	43052831	43052831	Nonsense_Mutation	C	T	p.Q356*
SKCM	TCGA-D3-A1Q6-06	UQCRC1	ENST00000460105.1,ENST00000203407.5,ENST00000415995.1	chr3	48638112:48638273:48638407:48638551:48638784:48638858,	48638408	48638551	48638486	48638486	Nonsense_Mutation	C	T	p.W296*
SKCM	TCGA-D3-A1Q6-06	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619728	114619728	Nonsense_Mutation	C	T	p.Q238*
SKCM	TCGA-D3-A1Q6-06	ABCC8	ENST00000389817.3,ENST00000526168.1,ENST00000302539.4	chr11	17415812:17415946:17416718:17416822:17417156:17417185,	17416719	17416822	17416776	17416776	Nonsense_Mutation	C	A	p.E1453*
SKCM	TCGA-D3-A1Q6-06	ABCC8	ENST00000531642.1	chr11	17415812:17415946:17416718:17417017:17417156:17417185,	17416719	17417017	17416776	17416776	Nonsense_Mutation	C	A	p.E1453*
SKCM	TCGA-D3-A1Q6-06	UQCRC1	ENST00000460105.1,ENST00000203407.5,ENST00000415995.1	chr3	48638112:48638273:48638407:48638551:48638784:48638858,	48638408	48638551	48638487	48638487	Nonsense_Mutation	C	T	p.W296*
SKCM	TCGA-D3-A1Q6-06	ARHGAP24	ENST00000514229.1	chr4	86749045:86749128:86844800:86844923:86863218:86863358,	86844801	86844923	86844906	86844906	Nonsense_Mutation	G	A	p.W125*
SKCM	TCGA-D3-A1Q6-06	CCDC93	ENST00000319432.5,ENST00000437999.1,ENST00000376300.2	chr2	118677880:118677972:118688612:118688726:118693070:118693155,	118688613	118688726	118688702	118688702	Nonsense_Mutation	T	A	p.K585*
SKCM	TCGA-D3-A8GC-06	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735736	4735736	Nonsense_Mutation	G	A	p.Q778*
SKCM	TCGA-D3-A8GC-06	ABCC8	ENST00000389817.3,ENST00000302539.4	chr11	17450111:17450217:17452360:17452506:17453750:17453791,	17452361	17452506	17452386	17452386	Nonsense_Mutation	G	A	p.R598*
SKCM	TCGA-D3-A8GC-06	COL20A1	ENST00000435874.1,ENST00000358894.6,ENST00000326996.6,ENST00000422202.1	chr20	61940684:61940849:61941109:61941267:61941732:61941862,	61941110	61941267	61941195	61941195	Nonsense_Mutation	G	A	p.W404*
SKCM	TCGA-D3-A8GC-06	COL20A1	ENST00000479501.1	chr20	61940684:61940849:61941106:61941267:61941732:61941862,	61941107	61941267	61941195	61941195	Nonsense_Mutation	G	A	p.W404*
SKCM	TCGA-D3-A8GC-06	GSG1L	ENST00000380897.3,ENST00000395724.3,ENST00000447459.2	chr16	27818807:27818875:27840109:27840277:27856270:27856382,	27840110	27840277	27840268	27840268	Nonsense_Mutation	C	T	p.W69*
SKCM	TCGA-D3-A51R-06	CLEC18B	ENST00000339953.5	chr16	74447476:74447574:74451956:74452196:74454398:74454490,	74451957	74452196	74452089	74452089	Nonsense_Mutation	C	T	p.W108*
SKCM	TCGA-D3-A51R-06	PRC1	ENST00000560914.1,ENST00000394249.3,ENST00000442656.2,ENST00000361188.5,ENST00000559828.1,ENST00000361919.3	chr15	91517814:91517961:91519905:91520001:91522387:91522524,	91519906	91520001	91519980	91519980	Nonsense_Mutation	G	A	p.R377*
SKCM	TCGA-D3-A51R-06	KAZALD1	ENST00000477979.1	chr10	102821829:102821872:102823962:102824178:102824257:102824405,	102823963	102824178	102824051	102824051	Nonsense_Mutation	G	A	p.W182*
SKCM	TCGA-D3-A51R-06	DNAH5	ENST00000265104.4	chr5	13727615:13727765:13729547:13729669:13735239:13735430,	13729548	13729669	13729620	13729620	Nonsense_Mutation	C	T	p.W3937*
SKCM	TCGA-D3-A51R-06	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000435379.1,ENST00000538330.1,ENST00000539875.1,ENST00000543219.1,ENST00000318197.6	chr12	18837063:18837213:18841022:18841152:18847843:18847978,	18841023	18841152	18841059	18841059	Nonsense_Mutation	G	A	p.Q519*
SKCM	TCGA-D3-A51R-06	ANO2	ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5674723:5674829:5684999:5685181:5687120:5687173,	5685000	5685181	5685010	5685010	Nonsense_Mutation	G	A	p.Q871*
SKCM	TCGA-FR-A7U9-06	ADD3	ENST00000360162.3,ENST00000356080.4,ENST00000277900.8	chr10	111879223:111879322:111881867:111882050:111883774:111883901,	111881868	111882050	111881999	111881999	Nonsense_Mutation	G	A	p.W364*
SKCM	TCGA-FR-A7U9-06	WDR70	ENST00000511906.1,ENST00000504564.1,ENST00000265107.4	chr5	37438023:37438083:37443340:37443474:37479935:37480089,	37443341	37443474	37443452	37443452	Nonsense_Mutation	C	T	p.R222*
SKCM	TCGA-FR-A7U9-06	RGR	ENST00000359452.4	chr10	86007460:86007503:86008665:86008799:86012612:86012766,	86008666	86008799	86008773	86008773	Nonsense_Mutation	G	A	p.W115*
SKCM	TCGA-FR-A7U9-06	RGR	ENST00000483660.1	chr10	86007460:86007503:86008677:86008799:86012612:86012766,86004818:86004925:86008677:86008799:86012612:86012766,	86008678	86008799	86008773	86008773	Nonsense_Mutation	G	A	p.W115*
SKCM	TCGA-FR-A7U9-06	RGR	ENST00000483771.1	chr10	86004844:86004925:86007396:86008799:86012612:86012766,	86007397	86008799	86008773	86008773	Nonsense_Mutation	G	A	p.W115*
SKCM	TCGA-FR-A7U9-06	RGR	ENST00000483744.1	chr10	86007460:86007503:86008620:86008799:86012612:86012766,	86008621	86008799	86008773	86008773	Nonsense_Mutation	G	A	p.W115*
SKCM	TCGA-FR-A7U9-06	TBL1X	ENST00000380961.1,ENST00000407597.2,ENST00000536365.1,ENST00000424279.1,ENST00000217964.7	chrX	9659618:9659751:9660152:9660294:9661188:9661252,	9660153	9660294	9660291	9660291	Nonsense_Mutation	G	A	p.W296*
SKCM	TCGA-FR-A7U9-06	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148677798:148677913:148680541:148680680:148683599:148683730,	148680542	148680680	148680596	148680596	Nonsense_Mutation	C	T	p.Q378*
SKCM	TCGA-FR-A7U9-06	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639601	17639601	Nonsense_Mutation	G	A	p.Q518*
SKCM	TCGA-FR-A7U9-06	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352339	113352339	Nonsense_Mutation	C	T	p.R546*
SKCM	TCGA-FR-A7U9-06	CHI3L2	ENST00000369744.2,ENST00000445067.2,ENST00000466741.1,ENST00000529459.1,ENST00000369748.4,ENST00000497220.1	chr1	111783948:111784065:111784848:111784988:111785838:111786054,	111784849	111784988	111784954	111784954	Nonsense_Mutation	C	T	p.Q381*
SKCM	TCGA-FR-A7U9-06	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74287951	74287951	Nonsense_Mutation	G	A	p.Q787*
SKCM	TCGA-FR-A7U9-06	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671243	186671243	Nonsense_Mutation	C	A	p.S5826*
SKCM	TCGA-FR-A7U9-06	SBF1	ENST00000380817.3,ENST00000348911.6,ENST00000390679.3	chr22	50898962:50899141:50899587:50899715:50899951:50900147,	50899588	50899715	50899632	50899632	Nonsense_Mutation	G	A	p.Q975*
SKCM	TCGA-FR-A7U9-06	ENPEP	ENST00000265162.5	chr4	111470871:111471042:111474470:111474611:111480802:111480881,	111474471	111474611	111474532	111474532	Nonsense_Mutation	C	T	p.R855*
SKCM	TCGA-FR-A7U9-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
SKCM	TCGA-FR-A7U9-06	RCOR1	ENST00000262241.6,ENST00000570597.1	chr14	103167614:103167667:103173687:103173849:103174801:103174920,	103173688	103173849	103173841	103173841	Nonsense_Mutation	C	T	p.Q218*
SKCM	TCGA-FR-A7U9-06	ZC3H14	ENST00000557607.1,ENST00000302216.8	chr14	89042183:89042284:89044328:89044484:89068267:89068353,89042183:89042284:89044328:89044484:89063077:89063152,89042183:89042284:89044328:89044484:89073586:89073707,	89044329	89044484	89044481	89044481	Nonsense_Mutation	C	T	p.Q426*
SKCM	TCGA-FR-A7U9-06	ZC3H14	ENST00000556110.1	chr14	89042183:89042284:89044336:89044484:89068267:89068353,	89044337	89044484	89044481	89044481	Nonsense_Mutation	C	T	p.Q426*
SKCM	TCGA-FR-A7U9-06	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150855	128150855	Nonsense_Mutation	G	A	p.Q80*
SKCM	TCGA-FR-A7U9-06	SYT8	ENST00000424556.2,ENST00000381978.3,ENST00000341958.3,ENST00000381968.3,ENST00000535046.1	chr11	1857439:1857514:1857654:1857822:1857985:1858091,	1857655	1857822	1857820	1857820	Nonsense_Mutation	C	T	p.Q228*
SKCM	TCGA-FR-A7U9-06	SNX29	ENST00000564111.1,ENST00000566228.1	chr16	12096847:12096900:12121176:12121301:12136753:12136854,	12121177	12121301	12121235	12121235	Nonsense_Mutation	C	T	p.R61*
SKCM	TCGA-FR-A7U9-06	KCNH5	ENST00000322893.7,ENST00000394968.1	chr14	63246445:63246642:63269046:63269299:63316370:63316570,	63269047	63269299	63269215	63269215	Nonsense_Mutation	G	A	p.R552*
SKCM	TCGA-FR-A7U9-06	SEC23B	ENST00000422877.1,ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000262544.2	chr20	18523011:18523046:18523662:18523816:18526599:18526677,	18523663	18523816	18523754	18523754	Nonsense_Mutation	C	T	p.R535*
SKCM	TCGA-D3-A2JN-06	CLEC2B	ENST00000228438.2	chr12	10005731:10006007:10006979:10007083:10010072:10010236,	10006980	10007083	10007020	10007020	Nonsense_Mutation	G	A	p.R101*
SKCM	TCGA-D3-A2JN-06	LRRC27	ENST00000368612.1,ENST00000368615.3,ENST00000368614.3,ENST00000432555.2,ENST00000368610.3,ENST00000368613.4	chr10	134158001:134158154:134161487:134161860:134165110:134165257,	134161488	134161860	134161692	134161692	Nonsense_Mutation	G	A	p.W253*
SKCM	TCGA-D3-A2JN-06	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000574224.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16108396:16108485:16110352:16110478:16126965:16127027,	16110353	16110478	16110416	16110416	Nonsense_Mutation	C	T	p.Q185*
SKCM	TCGA-DA-A1HV-06	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380875.3	chr9	14804953:14805150:14806658:14806844:14807937:14808132,	14806659	14806844	14806683	14806683	Nonsense_Mutation	T	A	p.K1085*
SKCM	TCGA-DA-A1HV-06	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54096512:54096675:54101475:54101631:54102763:54102892,	54101476	54101631	54101580	54101580	Nonsense_Mutation	G	A	p.Q1666*
SKCM	TCGA-DA-A1HV-06	MYOM2	ENST00000262113.4,ENST00000523595.1,ENST00000523438.1,ENST00000520779.1	chr8	2088771:2088809:2089063:2089100:2090299:2090322,	2089064	2089100	2089090	2089090	Nonsense_Mutation	C	T	p.Q1331*
SKCM	TCGA-DA-A1HV-06	AMHR2	ENST00000550311.1	chr12	53823236:53823409:53823614:53823762:53823929:53824066,53823236:53823409:53823614:53823762:53823933:53824066,	53823615	53823762	53823728	53823728	Nonsense_Mutation	G	A	p.W418*
SKCM	TCGA-DA-A1HV-06	ARMC1	ENST00000523384.1	chr8	66534497:66534589:66539450:66539668:66546232:66546406,66525572:66525668:66539450:66539668:66546232:66546406,	66539451	66539668	66539522	66539522	Nonsense_Mutation	G	A	p.Q38*
SKCM	TCGA-DA-A1HV-06	RICTOR	ENST00000511516.1,ENST00000357387.3,ENST00000510711.1,ENST00000296782.5	chr5	38971978:38972061:38975638:38975706:38978684:38978750,	38975639	38975706	38975651	38975651	Nonsense_Mutation	G	A	p.R293*
SKCM	TCGA-DA-A1HV-06	RARRES2	ENST00000467793.1,ENST00000466675.1,ENST00000482669.1,ENST00000223271.3	chr7	150036074:150036170:150037188:150037293:150037524:150037566,	150037189	150037293	150037222	150037222	Nonsense_Mutation	C	T	p.W82*
SKCM	TCGA-DA-A1HV-06	C6orf118	ENST00000230301.8	chr6	165713852:165713975:165715057:165715785:165723050:165723096,	165715058	165715785	165715408	165715408	Nonsense_Mutation	G	A	p.Q31*
SKCM	TCGA-DA-A1HV-06	ADAMTS18	ENST00000282849.5	chr16	77356232:77356363:77359762:77359935:77369652:77369801,	77359763	77359935	77359786	77359786	Nonsense_Mutation	C	T	p.W670*
SKCM	TCGA-DA-A1HV-06	BPIFB2	ENST00000170150.3	chr20	31596353:31596489:31598829:31598923:31600608:31600713,	31598830	31598923	31598913	31598913	Nonsense_Mutation	C	T	p.Q65*
SKCM	TCGA-DA-A1HV-06	SLC41A2	ENST00000258538.3	chr12	105280070:105280217:105282810:105282955:105289051:105289123,	105282811	105282955	105282952	105282952	Nonsense_Mutation	G	A	p.Q247*
SKCM	TCGA-DA-A1HV-06	MPPED2	ENST00000448418.2,ENST00000358117.5,ENST00000526437.1	chr11	30435774:30435888:30439064:30439180:30516842:30517068,	30439065	30439180	30439117	30439117	Nonsense_Mutation	C	T	p.W200*
SKCM	TCGA-D3-A51F-06	DUSP18	ENST00000407308.1	chr22	31048082:31048284:31059390:31060067:31063448:31063796,31048082:31048284:31059390:31060067:31062793:31062925,	31059391	31060067	31059547	31059547	Nonsense_Mutation	C	T	p.W148*
SKCM	TCGA-D3-A51F-06	CNGA1	ENST00000358519.4,ENST00000402813.3,ENST00000420489.2,ENST00000514170.1,ENST00000544810.1	chr4	47938030:47939846:47942779:47942886:47944057:47944165,	47942780	47942886	47942867	47942867	Nonsense_Mutation	G	A	p.Q262*
SKCM	TCGA-D3-A1Q5-06	LCTL	ENST00000565875.1,ENST00000563438.1	chr15	66856248:66856336:66857013:66857177:66858194:66858231,	66857014	66857177	66857168	66857168	Nonsense_Mutation	C	T	p.W43*
SKCM	TCGA-D3-A1Q5-06	RAB25	ENST00000473336.1,ENST00000487325.1	chr1	156035701:156035897:156038060:156038254:156039461:156039542,156031173:156031234:156038060:156038254:156039461:156039542,	156038061	156038254	156038242	156038242	Nonsense_Mutation	C	T	p.R141*
SKCM	TCGA-D3-A1Q5-06	CYP4B1	ENST00000371923.4,ENST00000526297.1,ENST00000271153.4,ENST00000464439.2	chr1	47276479:47276621:47276811:47276856:47278167:47278295,	47276812	47276856	47276851	47276851	Nonsense_Mutation	G	A	p.W121*
SKCM	TCGA-EE-A2GU-06	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34105667:34105780:34109062:34109159:34110778:34110885,	34109063	34109159	34109108	34109108	Nonsense_Mutation	G	A	p.W3516*
SKCM	TCGA-EE-A2GU-06	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645158	46645158	Nonsense_Mutation	G	A	p.R568*
SKCM	TCGA-EE-A2GU-06	NEK9	ENST00000554258.1	chr14	75587218:75587283:75587821:75587877:75590748:75590926,75587218:75587283:75587821:75587877:75593405:75593636,	75587822	75587877	75587839	75587839	Nonsense_Mutation	T	A	p.K146*
SKCM	TCGA-EE-A2GU-06	ITGA6	ENST00000375221.2,ENST00000412899.1,ENST00000442250.1,ENST00000264107.7,ENST00000264106.6,ENST00000409080.1	chr2	173332208:173332288:173333852:173334108:173335701:173335833,	173333853	173334108	173334104	173334104	Nonsense_Mutation	G	A	p.W213*
SKCM	TCGA-EE-A2GU-06	LIFR	ENST00000506003.1,ENST00000263409.4,ENST00000453190.2	chr5	38489179:38489347:38490291:38490393:38493707:38493887,	38490292	38490393	38490385	38490385	Nonsense_Mutation	G	A	p.R692*
SKCM	TCGA-D9-A6E9-06	USP11	ENST00000480104.1,ENST00000218348.3,ENST00000469080.1,ENST00000377107.2	chrX	47102024:47102119:47102794:47103001:47103896:47103924,	47102795	47103001	47102868	47102868	Nonsense_Mutation	G	T	p.E553*
SKCM	TCGA-EE-A20H-06	MFN1	ENST00000480636.1	chr3	179095131:179095236:179096128:179096602:179103356:179103509,	179096129	179096602	179096489	179096489	Nonsense_Mutation	C	T	p.Q517*
SKCM	TCGA-EE-A20H-06	CAMK2G	ENST00000305762.7,ENST00000351293.3,ENST00000472912.1,ENST00000492020.1,ENST00000423381.1,ENST00000441192.1,ENST00000322680.3,ENST00000372765.1,ENST00000433289.1,ENST00000394762.2,ENST00000322635.3	chr10	75602215:75602299:75606982:75607105:75607745:75607770,	75606983	75607105	75607051	75607051	Nonsense_Mutation	G	A	p.Q251*
SKCM	TCGA-EE-A20H-06	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589626	67589626	Nonsense_Mutation	T	G	p.Y463*
SKCM	TCGA-EE-A20H-06	DOHH	ENST00000427575.1,ENST00000592858.1	chr19	3494025:3494102:3496538:3496884:3500558:3500911,	3496539	3496884	3496633	3496633	Nonsense_Mutation	G	C	p.Y60*
SKCM	TCGA-EE-A20H-06	PSG4	ENST00000244295.9	chr19	43702409:43702427:43708037:43708403:43709624:43709703,	43708038	43708403	43708384	43708384	Nonsense_Mutation	C	T	p.W28*
SKCM	TCGA-EB-A1NK-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124348612:124348772:124349864:124350061:124351550:124351686,	124349865	124350061	124349897	124349897	Nonsense_Mutation	G	A	p.R1007*
SKCM	TCGA-GF-A2C7-01	CCDC102B	ENST00000360242.5,ENST00000319445.6,ENST00000584156.1	chr18	66541905:66542022:66564455:66564665:66678170:66678341,	66564456	66564665	66564491	66564491	Nonsense_Mutation	G	A	p.W363*
SKCM	TCGA-FR-A8YD-06	SPATA18	ENST00000511028.1,ENST00000419395.2,ENST00000505320.1,ENST00000295213.4	chr4	52926584:52926690:52926947:52927063:52938082:52938179,52926584:52926690:52926947:52927063:52928385:52928490,	52926948	52927063	52926990	52926990	Nonsense_Mutation	T	A	p.L79*
SKCM	TCGA-D3-A2JL-06	U2SURP	ENST00000488497.3,ENST00000480029.1,ENST00000493598.2,ENST00000467348.1,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142761963:142762118:142769780:142769891:142772517:142772624,	142769781	142769891	142769799	142769799	Nonsense_Mutation	C	T	p.Q446*
SKCM	TCGA-D3-A2JL-06	F8	ENST00000360256.4	chrX	154091357:154091502:154124351:154124507:154128140:154128221,	154124352	154124507	154124378	154124378	Nonsense_Mutation	G	A	p.R2135*
SKCM	TCGA-D3-A2JL-06	USP8	ENST00000433963.1,ENST00000559329.1,ENST00000561330.1,ENST00000560730.1,ENST00000558091.1,ENST00000396444.3,ENST00000560297.1,ENST00000307179.4	chr15	50731239:50731374:50733545:50733690:50751196:50751267,50731239:50731374:50733545:50733690:50741596:50741637,	50733546	50733690	50733667	50733667	Nonsense_Mutation	A	T	p.R76*
SKCM	TCGA-D3-A2JL-06	DCAF4	ENST00000505361.1,ENST00000514191.1,ENST00000555042.1,ENST00000509153.1,ENST00000353777.3,ENST00000509320.1	chr14	73393185:73393251:73404678:73404778:73406509:73406610,	73404679	73404778	73404717	73404717	Nonsense_Mutation	C	T	p.R11*
SKCM	TCGA-EE-A3JI-06	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38266203:38266472:38320073:38320592:38357092:38357470,	38320074	38320592	38320463	38320463	Nonsense_Mutation	G	A	p.R170*
SKCM	TCGA-EE-A3JI-06	PTK7	ENST00000473339.1,ENST00000230418.4,ENST00000461389.1,ENST00000352931.2,ENST00000481273.1,ENST00000349241.2,ENST00000489707.1,ENST00000487673.1,ENST00000230419.4,ENST00000345201.2,ENST00000470019.1	chr6	43114355:43114436:43126554:43126706:43127525:43127621,	43126555	43126706	43126660	43126660	Nonsense_Mutation	C	T	p.Q943*
SKCM	TCGA-EE-A3JI-06	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871159	871159	Nonsense_Mutation	G	A	p.R444*
SKCM	TCGA-EE-A3JI-06	ATP6V0A4	ENST00000353492.4,ENST00000393054.1,ENST00000310018.2	chr7	138424284:138424378:138429867:138430025:138432169:138432309,	138429868	138430025	138430021	138430021	Nonsense_Mutation	C	T	p.W442*
SKCM	TCGA-EE-A3JI-06	USP33	ENST00000370793.1,ENST00000481579.1,ENST00000370792.3,ENST00000370794.3,ENST00000357428.1	chr1	78178884:78178966:78180298:78180468:78181426:78181553,	78180299	78180468	78180377	78180377	Nonsense_Mutation	G	A	p.R744*
SKCM	TCGA-EE-A3JI-06	CR2	ENST00000367057.3,ENST00000367058.3,ENST00000367059.3	chr1	207644341:207644432:207644767:207644844:207646116:207646213,	207644768	207644844	207644818	207644818	Nonsense_Mutation	G	A	p.W515*
SKCM	TCGA-EE-A3JI-06	IGSF21	ENST00000251296.1,ENST00000497331.2	chr1	18692112:18692191:18702803:18702889:18703293:18703414,	18702804	18702889	18702887	18702887	Nonsense_Mutation	C	T	p.Q367*
SKCM	TCGA-EE-A3JI-06	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54096512:54096675:54101475:54101631:54102763:54102892,	54101476	54101631	54101512	54101512	Nonsense_Mutation	C	T	p.W1688*
SKCM	TCGA-EE-A3JI-06	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152322470	152322470	Nonsense_Mutation	C	T	p.Q2146*
SKCM	TCGA-EE-A3JI-06	COMMD9	ENST00000532705.1,ENST00000528608.1,ENST00000526789.1	chr11	36300026:36300166:36302261:36302387:36310911:36310974,	36302262	36302387	36302279	36302279	Nonsense_Mutation	G	A	p.Q54*
SKCM	TCGA-EE-A3JI-06	ACSM1	ENST00000523065.1	chr16	20696514:20696725:20702318:20702557:20708957:20709066,	20702319	20702557	20702391	20702391	Nonsense_Mutation	C	T	p.W40*
SKCM	TCGA-EE-A3JI-06	ACSM1	ENST00000520010.1	chr16	20696514:20696725:20702318:20702561:20708957:20709066,	20702319	20702561	20702391	20702391	Nonsense_Mutation	C	T	p.W40*
SKCM	TCGA-EE-A3JI-06	DHX37	ENST00000544745.1,ENST00000308736.2,ENST00000539298.1	chr12	125457048:125457145:125459964:125460057:125461887:125462036,	125459965	125460057	125460023	125460023	Nonsense_Mutation	G	A	p.R308*
SKCM	TCGA-EE-A3JI-06	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635227	33635227	Nonsense_Mutation	C	T	p.R671*
SKCM	TCGA-EE-A3JI-06	B4GALT4	ENST00000480814.1,ENST00000483209.1,ENST00000393765.2,ENST00000467604.1	chr3	118945655:118945888:118948693:118949091:118953991:118954074,118945835:118945888:118948693:118949091:118955699:118955917,	118948694	118949091	118948832	118948832	Nonsense_Mutation	G	A	p.Q39*
SKCM	TCGA-FS-A1Z3-06	FCRL1	ENST00000368176.3,ENST00000358292.3,ENST00000491942.1,ENST00000368175.3	chr1	157772404:157772454:157773634:157773901:157776891:157776912,	157773635	157773901	157773723	157773723	Nonsense_Mutation	C	T	p.W77*
SKCM	TCGA-FS-A1Z3-06	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000389793.2	chr1	235952000:235952145:235954998:235955425:235956802:235956912,	235954999	235955425	235955367	235955367	Nonsense_Mutation	G	T	p.S1392*
SKCM	TCGA-FS-A1Z3-06	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231102927:231103096:231106118:231106202:231108445:231108526,	231106119	231106202	231106164	231106164	Nonsense_Mutation	T	G	p.L151*
SKCM	TCGA-FS-A1Z3-06	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619749	114619749	Nonsense_Mutation	C	T	p.Q136*
SKCM	TCGA-FS-A1Z3-06	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345394	119345394	Nonsense_Mutation	A	T	p.Y248*
SKCM	TCGA-FS-A1Z3-06	IRAK4	ENST00000551736.1,ENST00000448290.2	chr12	44161905:44162075:44165022:44165168:44165982:44166165,	44165023	44165168	44165129	44165129	Nonsense_Mutation	C	T	p.Q90*
SKCM	TCGA-FS-A1Z3-06	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000526707.1	chr11	9182259:9182412:9187382:9187514:9191402:9191496,	9187383	9187514	9187423	9187423	Nonsense_Mutation	C	T	p.W748*
SKCM	TCGA-FS-A1Z3-06	MZF1	ENST00000599369.1,ENST00000215057.2	chr19	59073299:59074871:59080643:59080764:59080882:59080953,	59080644	59080764	59080695	59080695	Nonsense_Mutation	C	A	p.E241*
SKCM	TCGA-FS-A1Z3-06	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16025993	16025993	Nonsense_Mutation	G	A	p.Q202*
SKCM	TCGA-ER-A194-01	SP140L	ENST00000444636.1,ENST00000483728.1,ENST00000415673.2,ENST00000243810.6	chr2	231253273:231253348:231254633:231254738:231256801:231256944,	231254634	231254738	231254715	231254715	Nonsense_Mutation	T	A	p.L314*
SKCM	TCGA-ER-A194-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229506	7229506	Nonsense_Mutation	C	T	p.Q392*
SKCM	TCGA-ER-A194-01	PTBP3	ENST00000334318.6,ENST00000374257.1,ENST00000458258.1,ENST00000343327.2,ENST00000374255.2	chr9	115014957:115015068:115024714:115024879:115030328:115030475,	115024715	115024879	115024768	115024768	Nonsense_Mutation	G	A	p.R186*
SKCM	TCGA-ER-A194-01	ITGAE	ENST00000263087.4	chr17	3665208:3665276:3667162:3667254:3680833:3680954,	3667163	3667254	3667190	3667190	Nonsense_Mutation	G	A	p.Q74*
SKCM	TCGA-ER-A194-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451818	55451818	Nonsense_Mutation	C	T	p.W151*
SKCM	TCGA-ER-A194-01	VIT	ENST00000379241.3,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1,ENST00000404084.1	chr2	37032580:37032807:37035614:37036128:37041325:37041576,	37035615	37036128	37035973	37035973	Nonsense_Mutation	G	A	p.W583*
SKCM	TCGA-ER-A194-01	CTDP1	ENST00000299543.7	chr18	77477809:77478016:77488906:77489069:77513651:77514501,77477809:77478016:77488906:77489069:77496354:77496521,	77488907	77489069	77488959	77488959	Nonsense_Mutation	C	T	p.Q824*
SKCM	TCGA-ER-A194-01	OSMR	ENST00000274276.3,ENST00000502536.1	chr5	38876302:38876475:38881694:38881866:38883928:38884213,	38881695	38881866	38881853	38881853	Nonsense_Mutation	G	A	p.W135*
SKCM	TCGA-ER-A194-01	FKTN	ENST00000223528.2,ENST00000602526.1,ENST00000602661.1,ENST00000448551.2,ENST00000357998.5	chr9	108377561:108377688:108380239:108380373:108382214:108382342,	108380240	108380373	108380335	108380335	Nonsense_Mutation	C	T	p.Q336*
SKCM	TCGA-QB-AA9O-06	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789*
SKCM	TCGA-QB-AA9O-06	SERPINA6	ENST00000341584.3	chr14	94776072:94776343:94780372:94781004:94789603:94789656,	94780373	94781004	94780932	94780932	Nonsense_Mutation	C	T	p.W18*
SKCM	TCGA-QB-AA9O-06	PTGER3	ENST00000370932.2	chr1	71419445:71419472:71477987:71478167:71512363:71513281,71439979:71440071:71477987:71478167:71512363:71513281,71318255:71318542:71477987:71478167:71512363:71513281,	71477988	71478167	71478002	71478002	Nonsense_Mutation	G	A	p.R355*
SKCM	TCGA-QB-AA9O-06	PTGER3	ENST00000351052.5	chr1	71439979:71440071:71477900:71478167:71512363:71513281,	71477901	71478167	71478002	71478002	Nonsense_Mutation	G	A	p.R355*
SKCM	TCGA-QB-AA9O-06	G6PC	ENST00000253801.2,ENST00000592383.1	chr17	41059616:41059645:41061319:41061435:41062931:41063353,	41061320	41061435	41061424	41061424	Nonsense_Mutation	G	A	p.W158*
SKCM	TCGA-QB-AA9O-06	SH3RF3	ENST00000309415.6	chr2	109745996:109746569:109964129:109964405:109988041:109988137,	109964130	109964405	109964301	109964301	Nonsense_Mutation	C	T	p.Q249*
SKCM	TCGA-QB-AA9O-06	AFF1	ENST00000511442.1,ENST00000507468.1,ENST00000395146.4,ENST00000503477.1	chr4	87928420:87928576:87967317:87967438:87967846:87968042,87869649:87869723:87967317:87967438:87967846:87968042,	87967318	87967438	87967346	87967346	Nonsense_Mutation	C	T	p.R16*
SKCM	TCGA-QB-AA9O-06	DCAF6	ENST00000432587.2	chr1	167921037:167921099:167944067:167944253:167956732:167956785,	167944068	167944253	167944194	167944194	Nonsense_Mutation	C	T	p.Q127*
SKCM	TCGA-QB-AA9O-06	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20691042:20691246:20698128:20698299:20721127:20721289,	20698129	20698299	20698162	20698162	Nonsense_Mutation	C	T	p.Q524*
SKCM	TCGA-QB-AA9O-06	FOXP2	ENST00000393489.3,ENST00000403559.4,ENST00000350908.4,ENST00000393494.2,ENST00000393498.2,ENST00000408937.3	chr7	114293980:114294064:114298120:114298322:114299410:114299487,	114298121	114298322	114298229	114298229	Nonsense_Mutation	C	T	p.Q484*
SKCM	TCGA-QB-AA9O-06	KNG1	ENST00000447445.1,ENST00000265023.4,ENST00000287611.2	chr3	186456887:186456995:186457116:186457203:186459310:186459388,	186457117	186457203	186457158	186457158	Nonsense_Mutation	G	A	p.W360*
SKCM	TCGA-QB-AA9O-06	NOTCH4	ENST00000375023.3	chr6	32168607:32168783:32168893:32169277:32169852:32169923,	32168894	32169277	32169050	32169050	Nonsense_Mutation	C	T	p.W1328*
SKCM	TCGA-QB-AA9O-06	BRD8	ENST00000512140.1,ENST00000455658.2	chr5	137506726:137506849:137507049:137507099:137513259:137513356,	137507050	137507099	137507087	137507087	Nonsense_Mutation	G	A	p.Q67*
SKCM	TCGA-QB-AA9O-06	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000533119.1,ENST00000371509.4,ENST00000407246.2,ENST00000430330.2,ENST00000435345.2	chr1	53504588:53504718:53513529:53513609:53516280:53516575,	53513530	53513609	53513566	53513566	Nonsense_Mutation	C	G	p.S502*
SKCM	TCGA-QB-AA9O-06	PLVAP	ENST00000252590.4	chr19	17471580:17471641:17476094:17476807:17476907:17476960,	17476095	17476807	17476265	17476265	Nonsense_Mutation	G	A	p.Q337*
SKCM	TCGA-QB-AA9O-06	GM2A	ENST00000357164.3	chr5	150632452:150632858:150639315:150639477:150646291:150646441,	150639316	150639477	150639418	150639418	Nonsense_Mutation	G	T	p.G62*
SKCM	TCGA-QB-AA9O-06	CC2D1A	ENST00000589138.1,ENST00000589606.1,ENST00000318003.7	chr19	14029942:14030015:14030630:14030764:14031369:14031481,	14030631	14030764	14030675	14030675	Nonsense_Mutation	C	T	p.Q423*
SKCM	TCGA-QB-AA9O-06	ITSN1	ENST00000399367.3,ENST00000399326.3,ENST00000381285.4,ENST00000381318.3	chr21	35239536:35239635:35247657:35247825:35254546:35254759,	35247658	35247825	35247793	35247793	Nonsense_Mutation	C	T	p.Q1437*
SKCM	TCGA-QB-AA9O-06	SLC15A3	ENST00000227880.3	chr11	60706951:60707110:60708593:60708762:60711160:60711264,60706951:60707110:60708593:60708762:60709506:60709611,	60708594	60708762	60708748	60708748	Nonsense_Mutation	C	T	p.W374*
SKCM	TCGA-QB-AA9O-06	ANKFN1	ENST00000566473.2,ENST00000318698.2	chr17	54535223:54535340:54543716:54543932:54554848:54555015,	54543717	54543932	54543771	54543771	Nonsense_Mutation	C	T	p.R541*
SKCM	TCGA-QB-AA9O-06	PAX3	ENST00000409551.3	chr2	223158885:223159020:223160246:223160373:223161696:223161932,	223160247	223160373	223160298	223160298	Nonsense_Mutation	G	A	p.R134*
SKCM	TCGA-QB-AA9O-06	PAX3	ENST00000350526.4,ENST00000336840.6,ENST00000392070.2,ENST00000392069.2,ENST00000409828.3,ENST00000258387.5,ENST00000344493.4	chr2	223158885:223159020:223160246:223160376:223161696:223161932,	223160247	223160376	223160298	223160298	Nonsense_Mutation	G	A	p.R134*
SKCM	TCGA-QB-AA9O-06	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072656	60072656	Nonsense_Mutation	G	A	p.Q680*
SKCM	TCGA-QB-AA9O-06	KIAA1549L	ENST00000321505.4,ENST00000526400.1,ENST00000389726.3	chr11	33612782:33612967:33620365:33620493:33628186:33628368,	33620366	33620493	33620375	33620375	Nonsense_Mutation	C	T	p.Q1235*
SKCM	TCGA-QB-AA9O-06	PPM1D	ENST00000305921.3	chr17	58725252:58725443:58733959:58734202:58740355:58741834,	58733960	58734202	58734155	58734155	Nonsense_Mutation	G	T	p.E405*
SKCM	TCGA-HR-A5NC-01	NAIP	ENST00000194097.4,ENST00000508426.2,ENST00000517649.1	chr5	70299602:70299684:70307101:70307201:70308174:70308745,	70307102	70307201	70307110	70307110	Nonsense_Mutation	C	T	p.W220*
SKCM	TCGA-D3-A51J-06	CA10	ENST00000570565.1,ENST00000340813.6,ENST00000451037.2,ENST00000285273.4,ENST00000442502.2,ENST00000575181.1,ENST00000571371.1	chr17	49824992:49825178:50008349:50008492:50149678:50149753,	50008350	50008492	50008459	50008459	Nonsense_Mutation	C	T	p.W57*
SKCM	TCGA-D3-A51J-06	MYO15A	ENST00000433411.3,ENST00000205890.5,ENST00000418233.3	chr17	18067055:18067152:18069674:18069835:18070903:18071035,	18069675	18069835	18069781	18069781	Nonsense_Mutation	G	A	p.W3298*
SKCM	TCGA-D3-A51J-06	SOX10	ENST00000396884.2,ENST00000360880.2	chr22	38374088:38374142:38379363:38379875:38380345:38380415,	38379364	38379875	38379617	38379617	Nonsense_Mutation	G	A	p.Q59*
SKCM	TCGA-BF-AAOX-01	LAMC1	ENST00000478064.1,ENST00000258341.4	chr1	183100433:183100513:183101534:183101672:183102540:183102673,	183101535	183101672	183101638	183101638	Nonsense_Mutation	C	T	p.Q1224*
SKCM	TCGA-BF-AAOX-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2892339	2892339	Nonsense_Mutation	G	A	p.W738*
SKCM	TCGA-BF-AAOX-01	OSMR	ENST00000274276.3	chr5	38846100:38846489:38869133:38869219:38876302:38876475,	38869134	38869219	38869168	38869168	Nonsense_Mutation	C	T	p.Q8*
SKCM	TCGA-BF-AAOX-01	CDYL2	ENST00000563890.1,ENST00000566173.1,ENST00000562812.1,ENST00000570137.2	chr16	80637812:80638443:80641988:80642132:80646522:80646733,	80641989	80642132	80642052	80642052	Nonsense_Mutation	C	T	p.W433*
SKCM	TCGA-BF-AAOX-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288161	74288161	Nonsense_Mutation	G	A	p.Q717*
SKCM	TCGA-BF-AAOX-01	TSPO2	ENST00000373161.1,ENST00000470917.1	chr6	41010704:41010897:41011295:41011437:41011678:41011951,	41011296	41011437	41011395	41011395	Nonsense_Mutation	G	A	p.W91*
SKCM	TCGA-BF-AAOX-01	PPRC1	ENST00000278070.2,ENST00000370012.1,ENST00000413464.2	chr10	103908573:103908695:103908934:103909086:103909682:103909937,	103908935	103909086	103909050	103909050	Nonsense_Mutation	C	T	p.R1619*
SKCM	TCGA-BF-AAOX-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150172	27150172	Nonsense_Mutation	C	T	p.Q158*
SKCM	TCGA-BF-AAOX-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39801603	39801603	Nonsense_Mutation	C	T	p.Q3115*
SKCM	TCGA-BF-AAOX-01	PTPRD	ENST00000381196.4,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000540109.1	chr9	8499646:8499840:8500753:8501059:8504260:8504405,	8500754	8501059	8500769	8500769	Nonsense_Mutation	G	A	p.R705*
SKCM	TCGA-BF-AAOX-01	GBP2	ENST00000370466.3,ENST00000464839.1,ENST00000463660.1	chr1	89579698:89579979:89582674:89582917:89583259:89583361,	89582675	89582917	89582870	89582870	Nonsense_Mutation	G	A	p.R225*
SKCM	TCGA-EB-A5FP-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
SKCM	TCGA-EB-A5FP-01	SPHKAP	ENST00000392056.3,ENST00000490603.1	chr2	228855989:228856042:228858249:228858336:228860224:228860351,	228858250	228858336	228858281	228858281	Nonsense_Mutation	G	A	p.Q1564*
SKCM	TCGA-EB-A5FP-01	ABCC5	ENST00000437205.1,ENST00000334444.6,ENST00000265586.6	chr3	183679298:183679442:183681172:183681376:183682972:183683045,	183681173	183681376	183681181	183681181	Nonsense_Mutation	G	A	p.Q743*
SKCM	TCGA-EB-A5FP-01	EAF2	ENST00000490434.1	chr3	121563299:121563394:121575857:121576003:121591383:121591635,	121575858	121576003	121575880	121575880	Nonsense_Mutation	C	T	p.Q121*
SKCM	TCGA-EE-A3JH-06	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28877902	28877902	Nonsense_Mutation	C	T	p.R163*
SKCM	TCGA-DA-A1IA-06	YPEL2	ENST00000312655.4	chr17	57409081:57409185:57430575:57430887:57465687:57465731,	57430576	57430887	57430801	57430801	Nonsense_Mutation	C	T	p.Q11*
SKCM	TCGA-DA-A1IA-06	SUN1	ENST00000456758.2,ENST00000429178.1,ENST00000413171.2,ENST00000340926.3	chr7	883006:883157:888054:888252:889156:889240,	888055	888252	888141	888141	Nonsense_Mutation	C	T	p.Q307*
SKCM	TCGA-DA-A1IA-06	SNRK	ENST00000429705.2,ENST00000437827.1,ENST00000454177.1,ENST00000296088.7	chr3	43373660:43373802:43381778:43381991:43384835:43384970,	43381779	43381991	43381975	43381975	Nonsense_Mutation	C	T	p.R310*
SKCM	TCGA-D3-A2JE-06	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151904384:151904513:151917607:151917820:151919085:151919151,	151917608	151917820	151917611	151917611	Nonsense_Mutation	G	A	p.R1237*
SKCM	TCGA-D3-A2JE-06	ARHGAP28	ENST00000532996.1,ENST00000314319.3,ENST00000579245.1,ENST00000531294.1,ENST00000400091.2,ENST00000418986.1,ENST00000383472.4,ENST00000262227.3,ENST00000419673.2	chr18	6873682:6873774:6876129:6876207:6882135:6882298,	6876130	6876207	6876178	6876178	Nonsense_Mutation	C	T	p.R262*
SKCM	TCGA-D3-A2JE-06	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107459575	107459575	Nonsense_Mutation	G	A	p.Q287*
SKCM	TCGA-D3-A2JE-06	NR5A2	ENST00000367357.3,ENST00000367362.3,ENST00000236914.3,ENST00000544748.1	chr1	200012937:200013020:200014570:200014712:200017299:200017946,	200014571	200014712	200014679	200014679	Nonsense_Mutation	C	T	p.Q144*
SKCM	TCGA-D3-A2JE-06	TENM3	ENST00000511685.1,ENST00000406950.2	chr4	183696070:183696306:183710245:183710542:183713426:183715038,	183710246	183710542	183710282	183710282	Nonsense_Mutation	C	T	p.R1781*
SKCM	TCGA-FS-A4F8-06	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509799	106509799	Nonsense_Mutation	G	A	p.W598*
SKCM	TCGA-FS-A4F8-06	PRSS16	ENST00000466364.1	chr6	27215509:27215586:27215660:27215827:27220586:27220728,27215509:27215586:27215660:27215827:27222471:27222478,	27215661	27215827	27215684	27215684	Nonsense_Mutation	G	T	p.E32*
SKCM	TCGA-W3-A825-06	PKD1	ENST00000570150.1	chr16	2166592:2166645:2167489:2167673:2167791:2167960,	2167490	2167673	2167558	2167558	Nonsense_Mutation	C	T	p.W439*
SKCM	TCGA-W3-A825-06	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81227780:81227957:81244225:81244390:81251238:81251889,	81244226	81244390	81244255	81244255	Nonsense_Mutation	G	A	p.Q783*
SKCM	TCGA-W3-A825-06	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000347328.5,ENST00000520064.2,ENST00000518444.1	chr12	50848096:50848200:50854917:50855130:50856364:50856413,	50854918	50855130	50855081	50855081	Nonsense_Mutation	G	T	p.E429*
SKCM	TCGA-W3-A825-06	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604474	179604474	Nonsense_Mutation	G	A	p.Q4496*
SKCM	TCGA-W3-A825-06	CADM3	ENST00000416746.1,ENST00000368125.4,ENST00000368124.4	chr1	159162367:159162520:159163212:159163350:159163659:159163692,	159163213	159163350	159163324	159163324	Nonsense_Mutation	G	A	p.W165*
SKCM	TCGA-W3-A825-06	FBXW4	ENST00000331272.7,ENST00000457105.2	chr10	103384503:103384567:103427642:103427737:103432671:103432804,	103427643	103427737	103427732	103427732	Nonsense_Mutation	C	T	p.W227*
SKCM	TCGA-W3-A825-06	TBL1X	ENST00000380961.1,ENST00000407597.2,ENST00000536365.1,ENST00000424279.1,ENST00000217964.7	chrX	9652082:9652228:9656056:9656315:9659618:9659751,	9656057	9656315	9656150	9656150	Nonsense_Mutation	C	T	p.R151*
SKCM	TCGA-W3-A825-06	FANCI	ENST00000566895.1	chr15	89824400:89824531:89824995:89826481:89828326:89828449,	89824996	89826481	89826380	89826380	Nonsense_Mutation	C	T	p.R533*
SKCM	TCGA-W3-A825-06	PKD1	ENST00000570150.1	chr16	2166592:2166645:2167489:2167673:2167791:2167960,	2167490	2167673	2167559	2167559	Nonsense_Mutation	C	T	p.W439*
SKCM	TCGA-W3-A825-06	IRAK4	ENST00000431837.1,ENST00000550615.1	chr12	44152769:44152819:44161905:44162075:44164840:44164907,44152769:44152819:44161905:44162075:44165982:44166165,	44161906	44162075	44161999	44161999	Nonsense_Mutation	C	T	p.Q29*
SKCM	TCGA-D3-A3C1-06	XPOT	ENST00000332707.5	chr12	64814132:64814301:64815014:64815251:64816784:64816823,	64815015	64815251	64815126	64815126	Nonsense_Mutation	C	T	p.Q319*
SKCM	TCGA-FS-A1ZS-06	CAPSL	ENST00000514524.1,ENST00000397366.1,ENST00000513623.1	chr5	35910467:35910645:35921085:35921222:35938642:35938737,	35921086	35921222	35921135	35921135	Nonsense_Mutation	G	A	p.R30*
SKCM	TCGA-FS-A1ZS-06	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000517666.1,ENST00000521496.1	chr8	124358857:124358990:124359331:124359646:124360422:124360513,	124359332	124359646	124359340	124359340	Nonsense_Mutation	A	T	p.L735*
SKCM	TCGA-FS-A1ZS-06	ACBD4	ENST00000376955.4	chr17	43215294:43215355:43216387:43216527:43220809:43221217,43215289:43215355:43216387:43216527:43219949:43220326,	43216388	43216527	43216450	43216450	Nonsense_Mutation	C	T	p.R238*
SKCM	TCGA-FS-A1ZS-06	PEAR1	ENST00000292357.7,ENST00000455314.1	chr1	156871979:156872077:156873709:156873819:156874539:156874644,156863522:156863629:156873709:156873819:156874539:156874644,	156873710	156873819	156873814	156873814	Nonsense_Mutation	G	A	p.W32*
SKCM	TCGA-D3-A8GQ-06	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19063007:19063138:19067863:19068019:19070737:19070816,	19067864	19068019	19067915	19067915	Nonsense_Mutation	G	A	p.W531*
SKCM	TCGA-D3-A8GQ-06	KIF16B	ENST00000354981.2	chr20	16292979:16293063:16316570:16316660:16351230:16351281,16292979:16293063:16316570:16316660:16336974:16337097,	16316571	16316660	16316609	16316609	Nonsense_Mutation	G	A	p.R1225*
SKCM	TCGA-D3-A8GQ-06	PCOLCE2	ENST00000485766.1,ENST00000295992.3,ENST00000483986.1	chr3	142557611:142557748:142561765:142561890:142567058:142567164,	142561766	142561890	142561768	142561768	Nonsense_Mutation	G	A	p.Q191*
SKCM	TCGA-D3-A8GQ-06	STAT6	ENST00000554764.1,ENST00000543873.2,ENST00000300134.3,ENST00000454075.3,ENST00000538913.2,ENST00000555318.1,ENST00000537215.2,ENST00000556155.1	chr12	57492797:57492861:57493076:57493223:57493549:57493577,	57493077	57493223	57493137	57493137	Nonsense_Mutation	G	A	p.Q611*
SKCM	TCGA-D3-A8GQ-06	RPL12	ENST00000361436.5,ENST00000497322.1,ENST00000536368.1,ENST00000497825.1	chr9	130210155:130210268:130210615:130210702:130211559:130211641,	130210616	130210702	130210655	130210655	Nonsense_Mutation	G	A	p.R114*
SKCM	TCGA-D3-A8GQ-06	STK10	ENST00000176763.5	chr5	171517235:171517366:171520415:171520964:171523429:171523564,	171520416	171520964	171520703	171520703	Nonsense_Mutation	G	A	p.Q423*
SKCM	TCGA-D3-A8GQ-06	SLC2A9	ENST00000309065.3,ENST00000503803.1,ENST00000506583.1,ENST00000512342.1,ENST00000264784.3	chr4	9828043:9828224:9836504:9836632:9889190:9889266,	9836505	9836632	9836507	9836507	Nonsense_Mutation	G	A	p.Q444*
SKCM	TCGA-D3-A8GQ-06	CP	ENST00000264613.6,ENST00000490639.1,ENST00000494544.1	chr3	148901252:148901392:148903025:148903233:148905838:148905883,148901252:148901392:148903025:148903233:148904306:148904519,	148903026	148903233	148903083	148903083	Nonsense_Mutation	C	T	p.W743*
SKCM	TCGA-D3-A8GQ-06	YTHDC2	ENST00000515883.1,ENST00000161863.4,ENST00000503857.1	chr5	112874770:112874878:112876664:112876813:112878064:112878200,	112876665	112876813	112876696	112876696	Nonsense_Mutation	G	A	p.W414*
SKCM	TCGA-D3-A8GQ-06	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119114984:119115195:119115900:119116072:119124870:119125018,	119115901	119116072	119116022	119116022	Nonsense_Mutation	C	T	p.Q1433*
SKCM	TCGA-D3-A8GQ-06	PAX7	ENST00000420770.2,ENST00000400661.3	chr1	18958017:18958182:18960796:18961032:18961604:18961734,	18960797	18961032	18960829	18960829	Nonsense_Mutation	C	T	p.Q40*
SKCM	TCGA-D3-A2JA-06	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42743290	42743290	Nonsense_Mutation	T	A	p.K371*
SKCM	TCGA-D3-A2JA-06	NLRP7	ENST00000446217.1,ENST00000588756.1,ENST00000328092.5,ENST00000592784.1,ENST00000448121.2	chr19	55435020:55435240:55438972:55439143:55441866:55442034,	55438973	55439143	55439137	55439137	Nonsense_Mutation	C	T	p.W967*
SKCM	TCGA-D3-A2JA-06	VPS72	ENST00000368892.4,ENST00000491094.2,ENST00000496809.1,ENST00000354473.4	chr1	151150476:151150621:151156792:151156969:151157981:151158096,	151156793	151156969	151156850	151156850	Nonsense_Mutation	G	A	p.Q169*
SKCM	TCGA-ER-A19D-06	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24831852	24831852	Nonsense_Mutation	G	A	p.W901*
SKCM	TCGA-ER-A19D-06	OXR1	ENST00000445937.1,ENST00000438229.2,ENST00000312046.6,ENST00000517455.1,ENST00000442977.2,ENST00000531443.1,ENST00000452423.2,ENST00000517566.2,ENST00000497705.1	chr8	107696473:107696587:107704955:107705105:107715133:107715315,	107704956	107705105	107705019	107705019	Nonsense_Mutation	C	T	p.R197*
SKCM	TCGA-GN-A266-06	PKP1	ENST00000352845.3,ENST00000367324.3,ENST00000263946.3	chr1	201293555:201293709:201294068:201294255:201294881:201294966,	201294069	201294255	201294248	201294248	Nonsense_Mutation	C	T	p.R693*
SKCM	TCGA-GN-A266-06	SIGLEC8	ENST00000340550.5	chr19	51958749:51958941:51960437:51960485:51961187:51961706,	51960438	51960485	51960453	51960453	Nonsense_Mutation	G	A	p.Q256*
SKCM	TCGA-GN-A266-06	CCDC173	ENST00000447353.1	chr2	170505691:170505856:170506838:170507031:170510584:170510724,	170506839	170507031	170506914	170506914	Nonsense_Mutation	C	T	p.W359*
SKCM	TCGA-GN-A266-06	SAMD4B	ENST00000598913.1,ENST00000314471.6,ENST00000596368.1	chr19	39860731:39860765:39866289:39866529:39867076:39867186,	39866290	39866529	39866355	39866355	Nonsense_Mutation	C	T	p.Q245*
SKCM	TCGA-GN-A266-06	RNF17	ENST00000418120.1,ENST00000255324.5	chr13	25436850:25436931:25439010:25439136:25440281:25440341,	25439011	25439136	25439030	25439030	Nonsense_Mutation	G	A	p.W1332*
SKCM	TCGA-GN-A266-06	VPS13B	ENST00000496144.1,ENST00000395996.1	chr8	100515063:100515178:100519997:100520139:100523331:100523740,100519364:100519431:100519997:100520139:100523331:100523740,	100519998	100520139	100520086	100520086	Nonsense_Mutation	C	T	p.R1416*
SKCM	TCGA-GN-A266-06	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297758	139297758	Nonsense_Mutation	C	T	p.W46*
SKCM	TCGA-GN-A266-06	GALNT15	ENST00000339732.5,ENST00000437509.1	chr3	16252630:16252748:16254075:16254270:16260909:16261041,	16254076	16254270	16254142	16254142	Nonsense_Mutation	C	T	p.Q422*
SKCM	TCGA-GN-A266-06	GSTM3	ENST00000488824.1,ENST00000256594.3,ENST00000486823.1,ENST00000540225.1,ENST00000361066.2	chr1	110279597:110279791:110280078:110280189:110280277:110280373,	110280079	110280189	110280150	110280150	Nonsense_Mutation	G	A	p.Q170*
SKCM	TCGA-GN-A266-06	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29677200:29677336:29679274:29679432:29683477:29683529,	29679275	29679432	29679366	29679366	Nonsense_Mutation	C	T	p.R2517*
SKCM	TCGA-GN-A266-06	HEPH	ENST00000441993.2,ENST00000458621.1,ENST00000419594.1	chrX	65382432:65382718:65390399:65390579:65392196:65392270,65384206:65384312:65390399:65390579:65392196:65392270,	65390400	65390579	65390523	65390523	Nonsense_Mutation	G	A	p.W91*
SKCM	TCGA-GN-A266-06	KDM2A	ENST00000529006.2,ENST00000398645.2	chr11	66947549:66947688:66948790:66948869:66949316:66949363,	66948791	66948869	66948824	66948824	Nonsense_Mutation	T	A	p.L72*
SKCM	TCGA-GN-A266-06	ABCC9	ENST00000544039.1,ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	21968696:21968827:21970120:21970241:21971083:21971185,	21970121	21970241	21970222	21970222	Nonsense_Mutation	C	T	p.W1264*
SKCM	TCGA-GN-A266-06	GRIK3	ENST00000373091.3	chr1	37261127:37267646:37270587:37270838:37271704:37271927,	37270588	37270838	37270698	37270698	Nonsense_Mutation	G	A	p.Q819*
SKCM	TCGA-GN-A266-06	ENPP3	ENST00000470930.1	chr6	131971166:131971289:131973681:131973807:131979462:131979560,	131973682	131973807	131973691	131973691	Nonsense_Mutation	G	A	p.W96*
SKCM	TCGA-GN-A266-06	PPP1R14A	ENST00000591585.1,ENST00000301242.4	chr19	38742945:38742978:38743533:38743614:38746778:38747012,	38743534	38743614	38743536	38743536	Nonsense_Mutation	G	A	p.Q94*
SKCM	TCGA-GN-A266-06	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782822	207782822	Nonsense_Mutation	G	A	p.W2028*
SKCM	TCGA-GN-A266-06	VSTM4	ENST00000332853.4	chr10	50226587:50227820:50255027:50255089:50256522:50256629,	50255028	50255089	50255039	50255039	Nonsense_Mutation	T	A	p.K276*
SKCM	TCGA-GN-A266-06	EFCAB13	ENST00000331493.2,ENST00000517484.1	chr17	45471390:45471465:45473199:45473343:45479497:45479569,	45473200	45473343	45473267	45473267	Nonsense_Mutation	G	A	p.W623*
SKCM	TCGA-GN-A266-06	MMP26	ENST00000300762.1,ENST00000380390.1	chr11	5009499:5009540:5010877:5011098:5011827:5011976,	5010878	5011098	5011075	5011075	Nonsense_Mutation	G	A	p.W99*
SKCM	TCGA-GN-A266-06	RARRES1	ENST00000237696.5	chr3	158415696:158415759:158422579:158422716:158428526:158428661,	158422580	158422716	158422676	158422676	Nonsense_Mutation	C	T	p.W192*
SKCM	TCGA-GN-A266-06	KDR	ENST00000263923.4	chr4	55968528:55968675:55970809:55971151:55971998:55972107,	55970810	55971151	55970896	55970896	Nonsense_Mutation	A	T	p.L634*
SKCM	TCGA-GN-A266-06	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468417	86468417	Nonsense_Mutation	G	A	p.W529*
SKCM	TCGA-GN-A266-06	CEL	ENST00000372080.4	chr9	135944442:135944646:135945847:135946045:135946373:135946557,	135945848	135946045	135946024	135946024	Nonsense_Mutation	G	A	p.W491*
SKCM	TCGA-GN-A266-06	CR2	ENST00000367057.3,ENST00000367058.3,ENST00000458541.2	chr1	207648192:207648561:207649578:207649764:207651229:207651415,	207649579	207649764	207649738	207649738	Nonsense_Mutation	G	A	p.W959*
SKCM	TCGA-GN-A266-06	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44060909	44060909	Nonsense_Mutation	C	T	p.Q247*
SKCM	TCGA-GN-A266-06	FCRL5	ENST00000361835.3,ENST00000368190.3,ENST00000368189.3	chr1	157516002:157516070:157516732:157516987:157519349:157519370,157514620:157514872:157516732:157516987:157519349:157519370,	157516733	157516987	157516808	157516808	Nonsense_Mutation	G	A	p.Q78*
SKCM	TCGA-GN-A266-06	PCED1A	ENST00000356872.3,ENST00000360652.2	chr20	2815959:2816355:2816684:2816960:2818877:2818998,	2816685	2816960	2816919	2816919	Nonsense_Mutation	G	A	p.Q295*
SKCM	TCGA-GN-A266-06	PRLR	ENST00000231423.3	chr5	35048876:35049513:35066050:35066204:35068317:35068387,	35066051	35066204	35066066	35066066	Nonsense_Mutation	C	A	p.E332*
SKCM	TCGA-GN-A266-06	CACNA1G	ENST00000354983.4,ENST00000507336.1,ENST00000359106.5	chr17	48696015:48696369:48697043:48697187:48701267:48701436,48696015:48696369:48697043:48697187:48699020:48699155,	48697044	48697187	48697080	48697080	Nonsense_Mutation	C	T	p.Q1906*
SKCM	TCGA-GN-A266-06	NRP1	ENST00000395995.1,ENST00000374867.2,ENST00000374875.1,ENST00000265371.4	chr10	33475144:33475416:33481208:33481346:33486577:33486637,	33481209	33481346	33481252	33481252	Nonsense_Mutation	C	T	p.W673*
SKCM	TCGA-GN-A266-06	DUSP13	ENST00000494588.2	chr10	76863750:76863855:76867749:76868041:76868766:76868891,	76867750	76868041	76867938	76867938	Nonsense_Mutation	C	T	p.W60*
SKCM	TCGA-GN-A266-06	DUSP13	ENST00000607009.1	chr10	76863750:76863855:76867749:76867967:76868766:76868891,76865418:76865626:76867749:76867967:76868766:76868891,76857500:76857643:76867749:76867967:76868766:76868891,	76867750	76867967	76867938	76867938	Nonsense_Mutation	C	T	p.W60*
SKCM	TCGA-GN-A266-06	CA1	ENST00000524324.1	chr8	86245753:86245849:86249173:86249292:86253827:86253888,	86249174	86249292	86249251	86249251	Nonsense_Mutation	G	A	p.Q93*
SKCM	TCGA-GN-A266-06	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57128574:57128689:57134235:57134415:57138392:57138469,	57134236	57134415	57134354	57134354	Nonsense_Mutation	G	A	p.R239*
SKCM	TCGA-GN-A266-06	TMEM68	ENST00000334667.2,ENST00000522090.1,ENST00000434581.2	chr8	56663609:56663716:56668802:56668970:56676494:56676539,56663609:56663716:56668802:56668970:56675193:56675293,	56668803	56668970	56668905	56668905	Nonsense_Mutation	C	A	p.G131*
SKCM	TCGA-GN-A266-06	CDK18	ENST00000476153.2,ENST00000419301.1,ENST00000504648.1,ENST00000506784.1,ENST00000512922.1,ENST00000478560.1,ENST00000429964.2,ENST00000360066.2,ENST00000515494.1,ENST00000505932.1	chr1	205493359:205493485:205494266:205494323:205495192:205495307,	205494267	205494323	205494285	205494285	Nonsense_Mutation	A	T	p.K140*
SKCM	TCGA-GN-A266-06	SLC25A21	ENST00000331299.5,ENST00000555449.1	chr14	37153032:37153085:37153948:37154130:37180522:37180687,	37153949	37154130	37153959	37153959	Nonsense_Mutation	G	A	p.Q259*
SKCM	TCGA-GN-A266-06	NPHP3	ENST00000326682.8,ENST00000474871.1,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132407917:132408107:132409371:132409494:132410035:132410130,	132409372	132409494	132409388	132409388	Nonsense_Mutation	G	A	p.Q893*
SKCM	TCGA-GN-A266-06	CASC4	ENST00000561305.1	chr15	44695248:44695252:44705533:44705634:44706711:44706959,	44705534	44705634	44705554	44705554	Nonsense_Mutation	C	T	p.Q421*
SKCM	TCGA-GN-A266-06	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195517442	195517442	Nonsense_Mutation	G	A	p.Q337*
SKCM	TCGA-GN-A266-06	TBX18	ENST00000606325.1,ENST00000606521.1,ENST00000606784.1,ENST00000369663.5	chr6	85457637:85457805:85466415:85466587:85469972:85470074,	85466416	85466587	85466564	85466564	Nonsense_Mutation	C	T	p.W208*
SKCM	TCGA-GN-A266-06	KLK5	ENST00000593428.1,ENST00000336334.3,ENST00000391809.2	chr19	51446563:51447042:51451895:51452029:51452114:51452371,	51451896	51452029	51452009	51452009	Nonsense_Mutation	G	A	p.Q205*
SKCM	TCGA-GN-A266-06	CUBN	ENST00000377833.4	chr10	17032332:17032514:17061831:17061982:17083031:17083219,	17061832	17061982	17061853	17061853	Nonsense_Mutation	G	A	p.Q1383*
SKCM	TCGA-GN-A266-06	CYP3A43	ENST00000312017.5,ENST00000222382.5,ENST00000354829.2	chr7	99445788:99445877:99447168:99447317:99453213:99453341,	99447169	99447317	99447176	99447176	Nonsense_Mutation	G	A	p.W39*
SKCM	TCGA-DA-A3F3-06	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345372	119345372	Nonsense_Mutation	G	A	p.Q256*
SKCM	TCGA-DA-A3F3-06	FCRL5	ENST00000368191.3,ENST00000361835.3,ENST00000368190.3,ENST00000356953.4	chr1	157497406:157497685:157504403:157504682:157508875:157509154,	157504404	157504682	157504541	157504541	Nonsense_Mutation	C	T	p.W515*
SKCM	TCGA-W3-AA1W-06	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58608910:58609033:58610366:58610486:58612602:58612839,	58610367	58610486	58610411	58610411	Nonsense_Mutation	G	A	p.Q554*
SKCM	TCGA-W3-AA1W-06	MS4A8	ENST00000532953.1,ENST00000300226.2,ENST00000529752.1,ENST00000450141.2,ENST00000525458.1	chr11	60468449:60468552:60470850:60470973:60474460:60474520,	60470851	60470973	60470857	60470857	Nonsense_Mutation	C	T	p.Q76*
SKCM	TCGA-W3-AA1W-06	MS4A8	ENST00000533691.1	chr11	60468449:60468552:60470750:60470973:60474460:60474520,	60470751	60470973	60470857	60470857	Nonsense_Mutation	C	T	p.Q76*
SKCM	TCGA-W3-AA1W-06	CDC25C	ENST00000348983.3,ENST00000415130.2	chr5	137627673:137627805:137654907:137655063:137661503:137661593,137627673:137627805:137654907:137655063:137664172:137664218,	137654908	137655063	137654919	137654919	Nonsense_Mutation	G	A	p.Q202*
SKCM	TCGA-W3-AA1W-06	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790823	133790823	Nonsense_Mutation	G	A	p.Q933*
SKCM	TCGA-W3-AA1W-06	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2	chr3	46477691:46477720:46479430:46479620:46480786:46480971,	46479431	46479620	46479530	46479530	Nonsense_Mutation	C	A	p.E667*
SKCM	TCGA-W3-AA1W-06	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101300	27101300	Nonsense_Mutation	C	T	p.R1528*
SKCM	TCGA-EE-A2MC-06	SIK3	ENST00000375300.1,ENST00000434315.2,ENST00000465421.1,ENST00000415541.1,ENST00000542607.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116731989:116732099:116732556:116732642:116732917:116733043,	116732557	116732642	116732561	116732561	Nonsense_Mutation	G	A	p.Q723*
SKCM	TCGA-EE-A2MC-06	UPB1	ENST00000413389.2,ENST00000326010.5,ENST00000415388.1	chr22	24916354:24916436:24919586:24919741:24921678:24922553,24917953:24917996:24919586:24919741:24921678:24922553,	24919587	24919741	24919732	24919732	Nonsense_Mutation	G	A	p.W286*
SKCM	TCGA-EE-A2MC-06	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332868	175332868	Nonsense_Mutation	G	A	p.R895*
SKCM	TCGA-EE-A2MC-06	SPOCK2	ENST00000463279.2,ENST00000373109.2,ENST00000536168.1,ENST00000317376.4,ENST00000469121.1,ENST00000460053.1	chr10	73822844:73822920:73823935:73823998:73826659:73826878,	73823936	73823998	73823966	73823966	Nonsense_Mutation	G	A	p.Q321*
SKCM	TCGA-EE-A2MC-06	TRIM3	ENST00000345851.3,ENST00000359518.3,ENST00000537602.1,ENST00000525074.1,ENST00000536344.1	chr11	6472121:6472290:6472500:6472668:6477301:6477374,	6472501	6472668	6472626	6472626	Nonsense_Mutation	G	A	p.R526*
SKCM	TCGA-EE-A2MC-06	PARD3	ENST00000374789.3,ENST00000466092.1,ENST00000545693.1,ENST00000545260.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34558714:34558827:34573062:34573173:34606034:34606260,	34573063	34573173	34573160	34573160	Nonsense_Mutation	G	A	p.R1030*
SKCM	TCGA-EE-A2MC-06	IL3RA	ENST00000331035.4	chrX	1464208:1464327:1467323:1467438:1470992:1471125,	1467324	1467438	1467418	1467418	Nonsense_Mutation	G	A	p.W93*
SKCM	TCGA-EE-A2MC-06	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100830940:100831116:100831639:100831810:100832148:100832350,	100831640	100831810	100831746	100831746	Nonsense_Mutation	G	T	p.E2935*
SKCM	TCGA-EE-A2MC-06	C1orf194	ENST00000369949.4,ENST00000369942.2	chr1	109649628:109649744:109650542:109650659:109656254:109656457,	109650543	109650659	109650610	109650610	Nonsense_Mutation	C	T	p.W32*
SKCM	TCGA-EE-A2MC-06	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	34101613:34101659:34118468:34118798:34125367:34125704,	34118469	34118798	34118710	34118710	Nonsense_Mutation	G	A	p.W440*
SKCM	TCGA-EE-A2MC-06	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230613	46230613	Nonsense_Mutation	C	T	p.Q288*
SKCM	TCGA-EE-A2MC-06	MYO3A	ENST00000265944.5	chr10	26490193:26490234:26491892:26492036:26500771:26501138,	26491893	26492036	26491913	26491913	Nonsense_Mutation	T	A	p.L1536*
SKCM	TCGA-RP-A695-06	CNKSR2	ENST00000379510.3,ENST00000279451.4,ENST00000425654.2	chrX	21519637:21519706:21534602:21534749:21544984:21545118,	21534603	21534749	21534731	21534731	Nonsense_Mutation	G	A	p.W313*
SKCM	TCGA-RP-A695-06	ZNF365	ENST00000395255.3	chr10	64148154:64148335:64219499:64219556:64239634:64240047,	64219500	64219556	64219504	64219504	Nonsense_Mutation	G	A	p.W310*
SKCM	TCGA-RP-A695-06	TARS	ENST00000509410.1,ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1,ENST00000509731.1	chr5	33462010:33462111:33462203:33462308:33463857:33463930,	33462204	33462308	33462244	33462244	Nonsense_Mutation	C	T	p.R591*
SKCM	TCGA-RP-A695-06	SRM	ENST00000376957.2,ENST00000459997.1	chr1	11116067:11116151:11116660:11116814:11118856:11118949,	11116661	11116814	11116706	11116706	Nonsense_Mutation	G	A	p.Q164*
SKCM	TCGA-RP-A695-06	SH3BP5	ENST00000465894.2	chr3	15345609:15345738:15372010:15372073:15373777:15373983,15345609:15345738:15372010:15372073:15382729:15382744,	15372011	15372073	15372031	15372031	Nonsense_Mutation	T	A	p.R61*
SKCM	TCGA-RP-A695-06	GRB14	ENST00000543549.1	chr2	165383523:165383645:165404169:165404326:165476196:165476329,165383523:165383645:165404169:165404326:165424824:165424994,	165404170	165404326	165404205	165404205	Nonsense_Mutation	C	T	p.W149*
SKCM	TCGA-RP-A695-06	BYSL	ENST00000372996.2	chr6	41899133:41899294:41899441:41899568:41900098:41900393,	41899442	41899568	41899486	41899486	Nonsense_Mutation	G	T	p.E296*
SKCM	TCGA-RP-A695-06	BYSL	ENST00000230340.4,ENST00000489290.1	chr6	41899133:41899294:41899465:41899568:41900098:41900393,	41899466	41899568	41899486	41899486	Nonsense_Mutation	G	T	p.E296*
SKCM	TCGA-ER-A19Q-06	UBR2	ENST00000372883.3,ENST00000372899.1,ENST00000372901.1	chr6	42652531:42652609:42655953:42656124:42657306:42657408,	42655954	42656124	42656027	42656027	Nonsense_Mutation	C	T	p.Q1643*
SKCM	TCGA-ER-A19Q-06	SLK	ENST00000369755.3,ENST00000335753.4	chr10	105777917:105778047:105778541:105778666:105779491:105779680,	105778542	105778666	105778643	105778643	Nonsense_Mutation	C	T	p.Q1037*
SKCM	TCGA-ER-A19Q-06	DAP3	ENST00000462002.1,ENST00000471523.1,ENST00000343043.3,ENST00000368336.5,ENST00000496863.1,ENST00000471214.1,ENST00000463575.1	chr1	155686796:155686919:155691307:155691409:155695172:155695281,	155691308	155691409	155691323	155691323	Nonsense_Mutation	C	T	p.Q62*
SKCM	TCGA-D3-A2JH-06	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000497062.2,ENST00000317304.6	chr20	45700823:45700891:45702796:45702974:45717877:45718020,	45702797	45702974	45702824	45702824	Nonsense_Mutation	C	T	p.Q171*
SKCM	TCGA-D3-A2JH-06	PABPC1L	ENST00000217073.2,ENST00000255136.3	chr20	43559161:43559367:43560982:43561073:43561712:43561826,	43560983	43561073	43561048	43561048	Nonsense_Mutation	G	A	p.W435*
SKCM	TCGA-D3-A2JH-06	PLA2G4D	ENST00000560932.1,ENST00000290472.3	chr15	42362914:42363081:42363320:42363515:42363641:42363749,	42363321	42363515	42363464	42363464	Nonsense_Mutation	C	T	p.W578*
SKCM	TCGA-D3-A2JH-06	TMPRSS7	ENST00000419127.1,ENST00000435737.1,ENST00000452346.2	chr3	111794167:111794339:111795722:111795991:111797588:111797725,	111795723	111795991	111795743	111795743	Nonsense_Mutation	G	A	p.W659*
SKCM	TCGA-D3-A2JH-06	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833013	25833013	Nonsense_Mutation	C	T	p.Q168*
SKCM	TCGA-D3-A2JH-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100390	168100390	Nonsense_Mutation	A	T	p.K830*
SKCM	TCGA-D3-A2JH-06	SAMHD1	ENST00000262878.4	chr20	35518631:35521469:35526224:35526362:35526842:35526947,	35526225	35526362	35526320	35526320	Nonsense_Mutation	G	A	p.R551*
SKCM	TCGA-D3-A8GV-06	EDEM2	ENST00000541621.1,ENST00000374492.3,ENST00000374491.3,ENST00000540582.1,ENST00000542871.1	chr20	33711692:33711837:33714053:33714178:33719444:33719586,	33714054	33714178	33714127	33714127	Nonsense_Mutation	C	T	p.W258*
SKCM	TCGA-D3-A8GV-06	ANGPT1	ENST00000520052.1,ENST00000297450.3	chr8	108315467:108315595:108334126:108334356:108348377:108348499,	108334127	108334356	108334241	108334241	Nonsense_Mutation	G	A	p.Q31*
SKCM	TCGA-D3-A8GV-06	ANGPT1	ENST00000517746.1,ENST00000520734.1	chr8	108315467:108315595:108334123:108334356:108348377:108348499,	108334124	108334356	108334241	108334241	Nonsense_Mutation	G	A	p.Q31*
SKCM	TCGA-D3-A8GV-06	ABCC6	ENST00000205557.7	chr16	16255294:16255421:16259479:16259790:16263502:16263710,16256849:16257049:16259479:16259790:16263502:16263710,	16259480	16259790	16259708	16259708	Nonsense_Mutation	C	T	p.W1026*
SKCM	TCGA-D3-A8GV-06	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996532	45996532	Nonsense_Mutation	G	A	p.Q33*
SKCM	TCGA-D3-A8GV-06	WDPCP	ENST00000409562.3,ENST00000409354.2,ENST00000272321.7,ENST00000398544.3,ENST00000409120.1,ENST00000409835.1,ENST00000409199.1,ENST00000417238.1	chr2	63605520:63605644:63609040:63609229:63631182:63631792,	63609041	63609229	63609218	63609218	Nonsense_Mutation	G	A	p.R291*
SKCM	TCGA-EE-A184-06	ODF2L	ENST00000488879.2,ENST00000394731.1	chr1	86851140:86851273:86852597:86852769:86861715:86861936,86850358:86850484:86852597:86852769:86861715:86861936,	86852598	86852769	86852689	86852689	Nonsense_Mutation	C	A	p.G8*
SKCM	TCGA-EE-A184-06	C9	ENST00000509186.1,ENST00000263408.4	chr5	39315876:39316131:39331777:39331916:39341247:39341395,	39331778	39331916	39331858	39331858	Nonsense_Mutation	C	A	p.G179*
SKCM	TCGA-EE-A184-06	SLC39A14	ENST00000240095.6,ENST00000289952.5,ENST00000381237.1	chr8	22262208:22262493:22265822:22266009:22269549:22269719,	22265823	22266009	22265865	22265865	Nonsense_Mutation	G	T	p.E105*
SKCM	TCGA-EE-A184-06	FAF1	ENST00000371778.4	chr1	51267302:51267349:51323600:51323669:51425438:51425525,	51323601	51323669	51323654	51323654	Nonsense_Mutation	C	A	p.E21*
SKCM	TCGA-RP-A693-06	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833265	82833265	Nonsense_Mutation	G	A	p.W1481*
SKCM	TCGA-RP-A693-06	SLC39A4	ENST00000530807.1	chr8	145637946:145638050:145638142:145638330:145638620:145638771,145637946:145638050:145638142:145638330:145638896:145638951,	145638143	145638330	145638194	145638194	Nonsense_Mutation	C	T	p.W563*
SKCM	TCGA-RP-A693-06	ADH1A	ENST00000209668.2	chr4	100200582:100200721:100201300:100201436:100203502:100203763,	100201301	100201436	100201320	100201320	Nonsense_Mutation	C	T	p.W315*
SKCM	TCGA-RP-A693-06	PTPRT	ENST00000373198.4,ENST00000373187.1,ENST00000356100.2,ENST00000373193.3,ENST00000373201.1,ENST00000373184.1,ENST00000373190.1	chr20	41306505:41306799:41385101:41385276:41400074:41400190,	41385102	41385276	41385271	41385271	Nonsense_Mutation	C	T	p.W230*
SKCM	TCGA-RP-A693-06	EFR3A	ENST00000254624.5,ENST00000519656.1,ENST00000334503.4	chr8	132999821:132999949:133008652:133008744:133013015:133013203,132999821:132999949:133008652:133008744:133014005:133014054,	133008653	133008744	133008661	133008661	Nonsense_Mutation	C	T	p.R692*
SKCM	TCGA-D3-A3C7-06	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977974	99977974	Nonsense_Mutation	C	T	p.Q204*
SKCM	TCGA-D3-A3C7-06	PKN1	ENST00000242783.6,ENST00000342216.4	chr19	14574871:14574965:14578376:14578453:14578529:14578605,	14578377	14578453	14578389	14578389	Nonsense_Mutation	C	T	p.Q582*
SKCM	TCGA-D3-A3C7-06	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819505	53819505	Nonsense_Mutation	G	A	p.W218*
SKCM	TCGA-D3-A3C7-06	GAB3	ENST00000496390.1,ENST00000424127.2,ENST00000475685.1,ENST00000369575.3	chrX	153906566:153906571:153908408:153908525:153924191:153924294,	153908409	153908525	153908454	153908454	Nonsense_Mutation	A	T	p.Y533*
SKCM	TCGA-D3-A3C7-06	HEXB	ENST00000513079.1,ENST00000261416.7,ENST00000511181.1	chr5	73985152:73985298:73989463:73989529:73992517:73992564,	73989464	73989529	73989524	73989524	Nonsense_Mutation	T	A	p.L169*
SKCM	TCGA-D3-A3C7-06	QKI	ENST00000453779.2,ENST00000361758.4	chr6	163983013:163983101:163984451:163984751:163987752:163987827,163983013:163983101:163984451:163984751:163986977:163987827,	163984452	163984751	163984665	163984665	Nonsense_Mutation	T	A	p.L283*
SKCM	TCGA-D3-A3C7-06	QKI	ENST00000361195.2,ENST00000545607.1	chr6	163983013:163983101:163984475:163984751:163987752:163987827,	163984476	163984751	163984665	163984665	Nonsense_Mutation	T	A	p.L283*
SKCM	TCGA-D3-A3C7-06	LRRC28	ENST00000559819.1,ENST00000447360.2,ENST00000301981.3,ENST00000558172.1,ENST00000558471.1,ENST00000561276.1,ENST00000559433.1,ENST00000558890.1	chr15	99828018:99828156:99892573:99892676:99901540:99901714,99874287:99874334:99892573:99892676:99901540:99901714,	99892574	99892676	99892588	99892588	Nonsense_Mutation	C	T	p.R203*
SKCM	TCGA-D3-A3C7-06	ATP2B3	ENST00000359149.3,ENST00000370181.2,ENST00000370186.1	chrX	152830378:152830561:152835060:152835214:152845435:152846027,	152835061	152835214	152835064	152835064	Nonsense_Mutation	G	T	p.E1102*
SKCM	TCGA-D3-A3C7-06	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248667	141248667	Nonsense_Mutation	G	A	p.Q124*
SKCM	TCGA-EE-A2GM-06	NLGN4X	ENST00000275857.6,ENST00000381095.3,ENST00000538097.1,ENST00000381092.1,ENST00000381093.2	chrX	5821117:5821907:5827094:5827280:5947320:5947473,	5827095	5827280	5827207	5827207	Nonsense_Mutation	C	T	p.W233*
SKCM	TCGA-EE-A2GM-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A2GM-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A2GM-06	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49196239:49196463:49197801:49197997:49199228:49199522,	49197802	49197997	49197860	49197860	Nonsense_Mutation	C	T	p.Q383*
SKCM	TCGA-EE-A2GM-06	UBE3C	ENST00000348165.5	chr7	156956503:156956557:156961741:156961816:156962997:156963093,	156961742	156961816	156961790	156961790	Nonsense_Mutation	C	T	p.R57*
SKCM	TCGA-EE-A2GM-06	GOLT1B	ENST00000539663.1,ENST00000539025.1	chr12	21660050:21660085:21661316:21661495:21665228:21665310,21659818:21659910:21661316:21661495:21665228:21665310,21654786:21654882:21661316:21661495:21665228:21665310,21660877:21661043:21661316:21661495:21665228:21665310,	21661317	21661495	21661380	21661380	Nonsense_Mutation	C	T	p.Q61*
SKCM	TCGA-EE-A2GM-06	RNLS	ENST00000331772.4	chr10	90034717:90034789:90074222:90074398:90122308:90122482,90044715:90045263:90074222:90074398:90122308:90122482,	90074223	90074398	90074236	90074236	Nonsense_Mutation	C	T	p.W288*
SKCM	TCGA-EE-A2GM-06	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157929346:157929387:157930985:157931207:157959622:157959983,	157930986	157931207	157931073	157931073	Nonsense_Mutation	G	A	p.R349*
SKCM	TCGA-EE-A2GM-06	CHAF1A	ENST00000301280.5	chr19	4405908:4405959:4408899:4409756:4418016:4418073,	4408900	4409756	4409289	4409289	Nonsense_Mutation	C	T	p.Q165*
SKCM	TCGA-EE-A2GM-06	SAMD12	ENST00000524796.1,ENST00000409003.4	chr8	119209785:119209971:119391798:119391939:119452070:119452200,	119391799	119391939	119391886	119391886	Nonsense_Mutation	G	A	p.Q126*
SKCM	TCGA-EE-A2GM-06	NLGN4X	ENST00000275857.6,ENST00000381095.3,ENST00000538097.1,ENST00000381092.1,ENST00000381093.2	chrX	5821117:5821907:5827094:5827280:5947320:5947473,	5827095	5827280	5827208	5827208	Nonsense_Mutation	C	T	p.W233*
SKCM	TCGA-EE-A2GM-06	CERS3	ENST00000284382.4,ENST00000558884.2,ENST00000538112.2	chr15	101031021:101031136:101041881:101042055:101061871:101061961,	101041882	101042055	101042026	101042026	Nonsense_Mutation	C	T	p.W10*
SKCM	TCGA-EE-A2GM-06	RNLS	ENST00000331772.4	chr10	90034717:90034789:90074222:90074398:90122308:90122482,90044715:90045263:90074222:90074398:90122308:90122482,	90074223	90074398	90074235	90074235	Nonsense_Mutation	C	T	p.W288*
SKCM	TCGA-EE-A2GM-06	LRGUK	ENST00000285928.2	chr7	133906530:133906670:133932307:133932396:133933702:133933828,	133932308	133932396	133932392	133932392	Nonsense_Mutation	C	T	p.Q690*
SKCM	TCGA-EE-A2GM-06	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760501	93760501	Nonsense_Mutation	G	A	p.R289*
SKCM	TCGA-BF-A1PU-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469888	47469888	Nonsense_Mutation	G	A	p.R52*
SKCM	TCGA-BF-A1PU-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46231280:46231490:46233111:46233279:46240638:46240720,	46233112	46233279	46233249	46233249	Nonsense_Mutation	C	T	p.Q490*
SKCM	TCGA-BF-A1PU-01	ARID2	ENST00000444670.1	chr12	46231280:46231490:46233168:46233279:46240638:46240720,	46233169	46233279	46233249	46233249	Nonsense_Mutation	C	T	p.Q490*
SKCM	TCGA-EE-A3J7-06	ACMSD	ENST00000485893.1,ENST00000356140.5	chr2	135602802:135602847:135616830:135616927:135620964:135621201,135602802:135602847:135616830:135616927:135619538:135619588,	135616831	135616927	135616890	135616890	Nonsense_Mutation	G	A	p.W54*
SKCM	TCGA-EE-A3J7-06	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103269859:103269945:103271212:103271357:103273373:103273487,	103271213	103271357	103271215	103271215	Nonsense_Mutation	G	T	p.S2700*
SKCM	TCGA-EE-A3J7-06	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982966	40982966	Nonsense_Mutation	C	T	p.Q29*
SKCM	TCGA-EE-A3J7-06	SGMS1	ENST00000429490.1,ENST00000361781.2	chr10	52066901:52067081:52067741:52067908:52071021:52071175,	52067742	52067908	52067877	52067877	Nonsense_Mutation	C	T	p.W309*
SKCM	TCGA-EE-A3J7-06	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264455	75264455	Nonsense_Mutation	C	T	p.Q819*
SKCM	TCGA-EE-A3J7-06	SPOPL	ENST00000420679.1,ENST00000280098.4	chr2	139307726:139307864:139308052:139308174:139308543:139308624,139307726:139307864:139308052:139308174:139308472:139308624,	139308053	139308174	139308107	139308107	Nonsense_Mutation	C	T	p.R45*
SKCM	TCGA-EE-A3J7-06	SFXN5	ENST00000272433.2,ENST00000463277.1,ENST00000474528.1	chr2	73198698:73198814:73215386:73215477:73226077:73226143,	73215387	73215477	73215456	73215456	Nonsense_Mutation	G	A	p.Q186*
SKCM	TCGA-EE-A3J7-06	ANO2	ENST00000545860.1,ENST00000327087.8,ENST00000542326.1,ENST00000546188.1,ENST00000356134.5,ENST00000538154.1	chr12	5744478:5744513:5756892:5756967:5841685:5841796,	5756893	5756967	5756944	5756944	Nonsense_Mutation	C	T	p.W524*
SKCM	TCGA-EE-A3J7-06	ADAMDEC1	ENST00000538205.1,ENST00000520193.1,ENST00000522298.1,ENST00000256412.4	chr8	24255992:24256064:24256386:24256553:24256905:24256987,	24256387	24256553	24256408	24256408	Nonsense_Mutation	C	T	p.Q183*
SKCM	TCGA-EE-A3J7-06	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52339205:52339318:52359563:52359722:52361561:52361678,	52359564	52359722	52359642	52359642	Nonsense_Mutation	G	A	p.Q483*
SKCM	TCGA-EE-A3J7-06	XPR1	ENST00000367590.4,ENST00000367589.3	chr1	180651495:180651547:180756888:180756990:180772523:180772747,	180756889	180756990	180756945	180756945	Nonsense_Mutation	C	T	p.Q60*
SKCM	TCGA-EE-A3J7-06	HNRNPDL	ENST00000502762.1,ENST00000602300.1,ENST00000349655.4	chr4	83349170:83349332:83349430:83349599:83350400:83350578,	83349431	83349599	83349475	83349475	Nonsense_Mutation	C	A	p.G190*
SKCM	TCGA-EE-A3J7-06	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000483030.1,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115263198:115263338:115266503:115266623:115267841:115267954,	115266504	115266623	115266543	115266543	Nonsense_Mutation	G	A	p.Q658*
SKCM	TCGA-EE-A3J7-06	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231825	230231825	Nonsense_Mutation	C	T	p.W622*
SKCM	TCGA-EE-A3J7-06	LAMB3	ENST00000415782.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209811878:209811993:209823308:209823463:209824261:209824321,	209823309	209823463	209823368	209823368	Nonsense_Mutation	G	A	p.R42*
SKCM	TCGA-EE-A3J7-06	BLVRA	ENST00000265523.4,ENST00000402924.1	chr7	43840063:43840171:43843274:43843446:43846575:43846938,	43843275	43843446	43843289	43843289	Nonsense_Mutation	G	T	p.E159*
SKCM	TCGA-BF-AAP7-01	PRKAB1	ENST00000229328.5,ENST00000545223.1,ENST00000545870.1,ENST00000541640.1,ENST00000540121.1	chr12	120112144:120112259:120114341:120114475:120117737:120117756,	120114342	120114475	120114443	120114443	Nonsense_Mutation	C	T	p.Q212*
SKCM	TCGA-BF-AAP7-01	AP3B2	ENST00000535359.1,ENST00000261722.3,ENST00000535348.1,ENST00000543938.1	chr15	83330919:83331004:83331445:83331674:83331878:83331985,	83331446	83331674	83331464	83331464	Nonsense_Mutation	G	A	p.Q920*
SKCM	TCGA-BF-AAP7-01	FAM3D	ENST00000358781.2	chr3	58622020:58622147:58622867:58622952:58625853:58625904,	58622868	58622952	58622926	58622926	Nonsense_Mutation	T	A	p.K134*
SKCM	TCGA-BF-AAP7-01	LEFTY2	ENST00000420304.2,ENST00000366820.5	chr1	226124303:226125504:226127060:226127300:226127455:226127571,	226127061	226127300	226127273	226127273	Nonsense_Mutation	C	T	p.W175*
SKCM	TCGA-BF-AAP7-01	PBDC1	ENST00000373358.3	chrX	75395307:75395448:75396715:75396827:75397450:75398031,	75396716	75396827	75396812	75396812	Nonsense_Mutation	G	T	p.E132*
SKCM	TCGA-BF-AAP7-01	GPRC6A	ENST00000310357.3	chr6	117121746:117121959:117127532:117128369:117130476:117130780,	117127533	117128369	117127656	117127656	Nonsense_Mutation	C	T	p.W404*
SKCM	TCGA-ER-A19E-06	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119912141:119912271:119962486:119962623:119962849:119962963,	119962487	119962623	119962559	119962559	Nonsense_Mutation	C	T	p.W54*
SKCM	TCGA-ER-A19E-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103547	168103547	Nonsense_Mutation	G	A	p.W1882*
SKCM	TCGA-ER-A19E-06	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42046634:42046765:42049985:42050037:42052520:42052727,	42049986	42050037	42050032	42050032	Nonsense_Mutation	C	T	p.R2396*
SKCM	TCGA-ER-A19E-06	TTC21B	ENST00000464374.1,ENST00000243344.7	chr2	166802033:166802200:166805903:166806014:166806104:166806234,	166805904	166806014	166805994	166805994	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-ER-A19E-06	TBATA	ENST00000299290.1	chr10	72532269:72532322:72533968:72534113:72534944:72535026,	72533969	72534113	72533991	72533991	Nonsense_Mutation	C	A	p.E299*
SKCM	TCGA-ER-A19E-06	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119912141:119912271:119962486:119962623:119962849:119962963,	119962487	119962623	119962558	119962558	Nonsense_Mutation	C	T	p.W54*
SKCM	TCGA-ER-A19E-06	SYT9	ENST00000318881.6	chr11	7273400:7273562:7324269:7324621:7334625:7335172,	7324270	7324621	7324557	7324557	Nonsense_Mutation	C	T	p.Q145*
SKCM	TCGA-ER-A19E-06	CSTF3	ENST00000323959.4	chr11	33120579:33120696:33121153:33121263:33123722:33123885,	33121154	33121263	33121205	33121205	Nonsense_Mutation	A	C	p.Y295*
SKCM	TCGA-EE-A3J4-06	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100922154:100922299:100933177:100933483:100962490:100962607,	100933178	100933483	100933232	100933232	Nonsense_Mutation	G	A	p.Q720*
SKCM	TCGA-EE-A3J4-06	FAAH2	ENST00000374900.4	chrX	57337025:57337162:57358030:57358240:57367703:57367823,	57358031	57358240	57358231	57358231	Nonsense_Mutation	G	T	p.G205*
SKCM	TCGA-DA-A95Y-06	OTUD3	ENST00000375120.3	chr1	20231383:20231480:20232924:20233109:20234062:20239438,	20232925	20233109	20232954	20232954	Nonsense_Mutation	C	T	p.R289*
SKCM	TCGA-DA-A95Y-06	SMG6	ENST00000570756.1,ENST00000576218.1,ENST00000263073.6,ENST00000536871.2,ENST00000573827.1,ENST00000544865.1,ENST00000354901.4,ENST00000573166.1	chr17	1968366:1968448:1968761:1968973:1972071:1972225,	1968762	1968973	1968896	1968896	Nonsense_Mutation	C	A	p.E1274*
SKCM	TCGA-DA-A95Y-06	GK	ENST00000471362.1	chrX	30709239:30709316:30712516:30712654:30714158:30714179,30695491:30695569:30712516:30712654:30714158:30714179,	30712517	30712654	30712595	30712595	Nonsense_Mutation	C	T	p.Q165*
SKCM	TCGA-DA-A95Y-06	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000343706.4,ENST00000404234.3,ENST00000403121.1	chr22	26736401:26736598:26743684:26743879:26761337:26761532,26736401:26736598:26743684:26743879:26747017:26747209,	26743685	26743879	26743737	26743737	Nonsense_Mutation	G	A	p.W755*
SKCM	TCGA-DA-A95Y-06	LILRB1	ENST00000396331.1,ENST00000434867.2,ENST00000396327.3,ENST00000396315.1,ENST00000396332.4,ENST00000396321.2,ENST00000396317.1,ENST00000418536.2,ENST00000324602.7	chr19	55145424:55145472:55146091:55146214:55146554:55146630,	55146092	55146214	55146187	55146187	Nonsense_Mutation	C	T	p.R486*
SKCM	TCGA-DA-A95Y-06	LILRB1	ENST00000462628.1	chr19	55145424:55145472:55146038:55146214:55146554:55146630,	55146039	55146214	55146187	55146187	Nonsense_Mutation	C	T	p.R486*
SKCM	TCGA-DA-A95Y-06	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70515426:70515555:70515834:70515891:70517037:70517167,	70515835	70515891	70515839	70515839	Nonsense_Mutation	C	T	p.R399*
SKCM	TCGA-DA-A1HY-06	PCNA	ENST00000379143.5,ENST00000379160.3	chr20	5098115:5098310:5099255:5099323:5099414:5099512,	5099256	5099323	5099321	5099321	Nonsense_Mutation	G	A	p.Q108*
SKCM	TCGA-DA-A1HY-06	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156395964	156395964	Nonsense_Mutation	C	T	p.Q160*
SKCM	TCGA-DA-A1HY-06	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72189203:72189362:72189442:72189530:72192284:72192383,	72189443	72189530	72189461	72189461	Nonsense_Mutation	C	T	p.R692*
SKCM	TCGA-DA-A1HY-06	XPOT	ENST00000332707.5	chr12	64829406:64829454:64833023:64833095:64838854:64838911,	64833024	64833095	64833072	64833072	Nonsense_Mutation	C	T	p.Q928*
SKCM	TCGA-DA-A1HY-06	LCMT1	ENST00000576625.1,ENST00000380962.5,ENST00000399069.3,ENST00000572869.1	chr16	25162874:25162936:25172422:25172525:25175918:25176039,	25172423	25172525	25172473	25172473	Nonsense_Mutation	C	T	p.R173*
SKCM	TCGA-DA-A1HY-06	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000359206.3	chr7	87038551:87038708:87041208:87041349:87042932:87043033,	87041209	87041349	87041264	87041264	Nonsense_Mutation	G	A	p.R957*
SKCM	TCGA-EE-A3JA-06	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17425146:17425198:17426742:17426804:17430354:17430496,	17426743	17426804	17426787	17426787	Nonsense_Mutation	C	T	p.Q61*
SKCM	TCGA-EE-A3JA-06	ENO2	ENST00000541477.1,ENST00000544774.1,ENST00000229277.1,ENST00000538763.1,ENST00000535366.1	chr12	7027103:7027326:7028729:7028927:7030743:7030945,	7028730	7028927	7028903	7028903	Nonsense_Mutation	C	T	p.Q281*
SKCM	TCGA-EE-A3JA-06	MCAT	ENST00000290429.6	chr22	43528885:43529492:43533086:43533304:43537167:43537255,	43533087	43533304	43533179	43533179	Nonsense_Mutation	C	A	p.E213*
SKCM	TCGA-EE-A3JA-06	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781078	25781078	Nonsense_Mutation	G	A	p.R291*
SKCM	TCGA-EE-A3JA-06	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662400	40662400	Nonsense_Mutation	G	A	p.W722*
SKCM	TCGA-EE-A3JA-06	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000495878.1,ENST00000393605.3,ENST00000544721.1,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72396688:72396726:72397086:72397236:72398483:72398547,	72397087	72397236	72397146	72397146	Nonsense_Mutation	G	A	p.R1415*
SKCM	TCGA-EE-A3JA-06	ARAP1	ENST00000542596.1	chr11	72396688:72396726:72397139:72397236:72398483:72398547,	72397140	72397236	72397146	72397146	Nonsense_Mutation	G	A	p.R1415*
SKCM	TCGA-EE-A3JA-06	MAP3K19	ENST00000315513.3,ENST00000392915.1	chr2	135738390:135739088:135740749:135740901:135741245:135741395,	135740750	135740901	135740840	135740840	Nonsense_Mutation	C	T	p.W1112*
SKCM	TCGA-EE-A3JA-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57*
SKCM	TCGA-EE-A3JA-06	UTS2	ENST00000377516.2	chr1	7906751:7906826:7907863:7907942:7909699:7909743,	7907864	7907942	7907881	7907881	Nonsense_Mutation	C	T	p.W107*
SKCM	TCGA-EE-A3JA-06	ARHGEF25	ENST00000333972.7,ENST00000286494.4,ENST00000471370.1	chr12	58009294:58009495:58009619:58009800:58010066:58010278,	58009620	58009800	58009767	58009767	Nonsense_Mutation	C	T	p.Q463*
SKCM	TCGA-EE-A3JA-06	SIK3	ENST00000375300.1,ENST00000434315.2,ENST00000375288.1,ENST00000415541.1,ENST00000413553.1,ENST00000292055.4,ENST00000445177.1	chr11	116746089:116746167:116746581:116746725:116746968:116747079,	116746582	116746725	116746668	116746668	Nonsense_Mutation	G	A	p.R385*
SKCM	TCGA-EE-A3JA-06	ANGPT4	ENST00000546022.1	chr20	868960:869082:870855:871011:896548:896960,	870856	871011	870942	870942	Nonsense_Mutation	G	A	p.Q127*
SKCM	TCGA-ER-A19A-06	DET1	ENST00000557842.1	chr15	89070829:89071017:89073853:89074704:89074843:89074946,	89073854	89074704	89074606	89074606	Nonsense_Mutation	G	A	p.Q122*
SKCM	TCGA-ER-A19A-06	PHF12	ENST00000577226.1,ENST00000332830.4,ENST00000584236.1,ENST00000378879.3,ENST00000268756.3,ENST00000584685.1	chr17	27248812:27248826:27254008:27254081:27277082:27277264,27251281:27251320:27254008:27254081:27277082:27277264,	27254009	27254081	27254014	27254014	Nonsense_Mutation	G	A	p.R106*
SKCM	TCGA-ER-A19A-06	PHF12	ENST00000582436.1	chr17	27248812:27248826:27250926:27254081:27277082:27277264,	27250927	27254081	27254014	27254014	Nonsense_Mutation	G	A	p.R106*
SKCM	TCGA-D3-A8GB-06	DISC1	ENST00000366633.3,ENST00000366632.2,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000422590.2,ENST00000602713.1,ENST00000602822.1,ENST00000366637.3	chr1	231906580:231906816:231930987:231931042:231935853:231935956,	231930988	231931042	231930992	231930992	Nonsense_Mutation	C	T	p.Q547*
SKCM	TCGA-D3-A8GB-06	RPS19	ENST00000598742.1,ENST00000221975.2,ENST00000593863.1	chr19	42365180:42365281:42373100:42373284:42373768:42373823,	42373101	42373284	42373208	42373208	Nonsense_Mutation	C	T	p.R94*
SKCM	TCGA-D3-A8GB-06	TM6SF2	ENST00000389363.4	chr19	19380981:19381085:19381153:19381251:19381830:19381934,	19381154	19381251	19381201	19381201	Nonsense_Mutation	G	A	p.Q84*
SKCM	TCGA-D3-A8GB-06	KANK3	ENST00000593649.1	chr19	8399383:8400676:8402678:8402740:8408108:8408146,	8402679	8402740	8402691	8402691	Nonsense_Mutation	G	A	p.Q8*
SKCM	TCGA-D3-A8GB-06	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231101797:231101975:231102927:231103096:231103475:231103642,231101797:231101975:231102927:231103096:231106118:231106202,	231102928	231103096	231102934	231102934	Nonsense_Mutation	C	T	p.Q82*
SKCM	TCGA-D3-A8GB-06	RSPH10B2	ENST00000359718.3,ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6803558:6803732:6805336:6805422:6806387:6806508,	6805337	6805422	6805411	6805411	Nonsense_Mutation	G	A	p.W216*
SKCM	TCGA-D3-A8GB-06	SPOCK3	ENST00000507370.1,ENST00000541354.1,ENST00000421836.2,ENST00000511269.1,ENST00000504953.1,ENST00000511905.1,ENST00000534949.1,ENST00000505187.1,ENST00000502821.1,ENST00000511531.1,ENST00000512681.1,ENST00000357154.3,ENST00000502330.1,ENST00000357545.4,ENST00000506886.1,ENST00000507137.1,ENST00000541637.1	chr4	167663147:167663210:167675658:167675880:167713320:167713440,	167675659	167675880	167675834	167675834	Nonsense_Mutation	C	T	p.W255*
SKCM	TCGA-D3-A8GB-06	CCDC60	ENST00000327554.2	chr12	119961497:119961623:119966419:119966551:119968678:119968868,	119966420	119966551	119966520	119966520	Nonsense_Mutation	A	T	p.K444*
SKCM	TCGA-D3-A8GJ-06	AOAH	ENST00000535891.1,ENST00000487014.1,ENST00000480201.1,ENST00000495942.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36589044:36589081:36616179:36616262:36633944:36634036,	36616180	36616262	36616230	36616230	Nonsense_Mutation	C	T	p.W324*
SKCM	TCGA-D3-A8GJ-06	TLDC2	ENST00000217320.3	chr20	35504533:35504610:35506301:35506457:35507443:35507596,	35506302	35506457	35506410	35506410	Nonsense_Mutation	C	T	p.Q48*
SKCM	TCGA-EE-A2MR-06	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000389645.3,ENST00000529307.1,ENST00000530820.1	chr11	34104371:34104424:34104501:34104588:34107610:34107766,	34104502	34104588	34104504	34104504	Nonsense_Mutation	T	G	p.Y294*
SKCM	TCGA-EE-A2MR-06	HNRNPC	ENST00000555309.1,ENST00000554417.1,ENST00000557201.1,ENST00000556513.1,ENST00000554539.1,ENST00000320084.7,ENST00000554383.1,ENST00000555914.1,ENST00000554455.1,ENST00000420743.2,ENST00000556897.1,ENST00000556628.1,ENST00000430246.2,ENST00000553300.1,ENST00000556142.1,ENST00000557157.1,ENST00000553753.1,ENST00000449098.1,ENST00000336053.6,ENST00000554969.1	chr14	21679968:21680082:21681118:21681276:21698477:21698525,	21681119	21681276	21681206	21681206	Nonsense_Mutation	G	A	p.Q146*
SKCM	TCGA-EE-A2MR-06	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143092161	143092161	Nonsense_Mutation	G	A	p.Q1239*
SKCM	TCGA-EE-A2MR-06	NLRC5	ENST00000538805.1,ENST00000262510.6,ENST00000545081.1,ENST00000308149.7,ENST00000538110.1,ENST00000539144.1,ENST00000436936.1	chr16	57061983:57062067:57062213:57062297:57063684:57063768,	57062214	57062297	57062239	57062239	Nonsense_Mutation	C	T	p.R729*
SKCM	TCGA-EE-A2MR-06	XDH	ENST00000379416.3	chr2	31596738:31596822:31598245:31598420:31599918:31600103,	31598246	31598420	31598275	31598275	Nonsense_Mutation	G	A	p.Q525*
SKCM	TCGA-EE-A2MR-06	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229611384:229611479:229613343:229613507:229619800:229619892,	229613344	229613507	229613413	229613413	Nonsense_Mutation	G	A	p.Q563*
SKCM	TCGA-EE-A2MR-06	CDH6	ENST00000514738.1,ENST00000265071.2	chr5	31305280:31305534:31313424:31313561:31316314:31316436,	31313425	31313561	31313513	31313513	Nonsense_Mutation	C	T	p.R448*
SKCM	TCGA-EE-A2MR-06	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965554	123965554	Nonsense_Mutation	C	T	p.Q602*
SKCM	TCGA-EE-A2MR-06	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6923954	6923954	Nonsense_Mutation	C	T	p.Q135*
SKCM	TCGA-EE-A2MR-06	ARMC1	ENST00000276569.3,ENST00000518908.1,ENST00000519352.1	chr8	66525572:66525668:66534497:66534589:66539450:66539668,	66534498	66534589	66534583	66534583	Nonsense_Mutation	G	A	p.R64*
SKCM	TCGA-EE-A2MR-06	AGPAT4	ENST00000320285.4	chr6	161575180:161575342:161587279:161587449:161653067:161653268,	161587280	161587449	161587427	161587427	Nonsense_Mutation	C	T	p.W67*
SKCM	TCGA-EE-A2MR-06	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390597	197390597	Nonsense_Mutation	C	T	p.Q547*
SKCM	TCGA-EE-A2MR-06	TADA3	ENST00000440161.1,ENST00000301964.2,ENST00000343450.2	chr3	9831192:9831298:9831396:9831647:9832943:9833065,	9831397	9831647	9831593	9831593	Nonsense_Mutation	G	A	p.R88*
SKCM	TCGA-EE-A2MR-06	DCDC1	ENST00000597505.1	chr11	30953317:30953499:30973991:30974115:31014005:31014231,30953317:30953499:30973991:30974115:31086015:31086173,	30973992	30974115	30974044	30974044	Nonsense_Mutation	C	T	p.W888*
SKCM	TCGA-EE-A2MR-06	CELSR1	ENST00000262738.3	chr22	46790038:46790159:46792501:46792643:46793570:46793682,	46792502	46792643	46792579	46792579	Nonsense_Mutation	G	T	p.C1922*
SKCM	TCGA-EE-A2MR-06	TCAIM	ENST00000342649.4,ENST00000417237.1	chr3	44402856:44403010:44408947:44409200:44434346:44434469,	44408948	44409200	44408953	44408953	Nonsense_Mutation	C	T	p.R109*
SKCM	TCGA-EE-A2MR-06	SLC39A11	ENST00000255559.3	chr17	70732788:70732858:70845772:70845943:70943869:70944014,70732788:70732858:70845772:70845943:70943890:70944014,	70845773	70845943	70845857	70845857	Nonsense_Mutation	G	A	p.R180*
SKCM	TCGA-EE-A2MR-06	STAB1	ENST00000321725.6	chr3	52557442:52557592:52557667:52557772:52557886:52557998,	52557668	52557772	52557706	52557706	Nonsense_Mutation	G	A	p.W2443*
SKCM	TCGA-EE-A2MR-06	ITGAL	ENST00000454514.2,ENST00000562857.1	chr16	30486833:30486901:30490411:30490529:30492759:30492905,	30490412	30490529	30490433	30490433	Nonsense_Mutation	C	T	p.R117*
SKCM	TCGA-EE-A2MR-06	TRIP4	ENST00000261884.3	chr15	64698528:64698658:64701811:64702027:64706283:64706410,	64701812	64702027	64701933	64701933	Nonsense_Mutation	C	T	p.R317*
SKCM	TCGA-EE-A2MR-06	STAT3	ENST00000585517.1,ENST00000264657.5,ENST00000404395.3,ENST00000585360.1,ENST00000588969.1	chr17	40497576:40497675:40498586:40498731:40500406:40500534,	40498587	40498731	40498622	40498622	Nonsense_Mutation	G	A	p.Q80*
SKCM	TCGA-EE-A2MR-06	CTSC	ENST00000527018.1,ENST00000227266.5	chr11	88029326:88029432:88033697:88033813:88042330:88042486,	88033698	88033813	88033707	88033707	Nonsense_Mutation	G	A	p.R250*
SKCM	TCGA-EE-A2MR-06	PLXDC1	ENST00000578390.1,ENST00000394318.3,ENST00000394316.2	chr17	37265500:37265644:37295906:37296085:37309176:37309280,37265500:37265644:37295906:37296085:37308798:37308865,37265500:37265644:37295906:37296085:37307614:37307772,	37295907	37296085	37296031	37296031	Nonsense_Mutation	C	T	p.W44*
SKCM	TCGA-EE-A2MR-06	MOV10L1	ENST00000262794.5,ENST00000545383.1,ENST00000395852.1	chr22	50598106:50598214:50599116:50599254:50599796:50600047,50598106:50598214:50599116:50599254:50599392:50599484,	50599117	50599254	50599252	50599252	Nonsense_Mutation	C	T	p.R1154*
SKCM	TCGA-EE-A2MR-06	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000490315.1,ENST00000331029.7,ENST00000360091.3,ENST00000332035.6,ENST00000483629.1,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29692228:29692358:29693816:29693939:29694722:29694791,	29693817	29693939	29693828	29693828	Nonsense_Mutation	C	T	p.Q436*
SKCM	TCGA-EE-A2MR-06	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265376	75265376	Nonsense_Mutation	C	T	p.R1126*
SKCM	TCGA-EE-A2MR-06	SPPL2A	ENST00000558934.1,ENST00000261854.5	chr15	50999644:51000071:51012136:51012297:51014320:51014398,	51012137	51012297	51012139	51012139	Nonsense_Mutation	G	A	p.Q496*
SKCM	TCGA-EE-A2MR-06	PACRG	ENST00000366888.2,ENST00000337019.3,ENST00000366889.2	chr6	163149191:163149423:163235178:163235313:163483181:163483353,	163235179	163235313	163235239	163235239	Nonsense_Mutation	C	T	p.R73*
SKCM	TCGA-EE-A2MR-06	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45874751:45875261:45878030:45878183:45891031:45891172,	45878031	45878183	45878181	45878181	Nonsense_Mutation	G	A	p.R522*
SKCM	TCGA-EE-A2MR-06	SPTLC3	ENST00000399002.2	chr20	13098152:13098372:13107237:13107364:13134649:13134785,	13107238	13107364	13107246	13107246	Nonsense_Mutation	G	A	p.W314*
SKCM	TCGA-EE-A2MR-06	IQGAP1	ENST00000559674.1,ENST00000560738.1,ENST00000268182.5,ENST00000561461.1	chr15	91030726:91030814:91034564:91034777:91035776:91035848,	91034565	91034777	91034751	91034751	Nonsense_Mutation	C	T	p.Q1479*
SKCM	TCGA-EE-A2MR-06	DAW1	ENST00000309931.2,ENST00000545118.1,ENST00000454999.1,ENST00000373666.2	chr2	228758510:228758633:228762897:228762997:228767717:228767802,	228762898	228762997	228762942	228762942	Nonsense_Mutation	G	A	p.W162*
SKCM	TCGA-EE-A2MR-06	SPAG11A	ENST00000434307.2	chr8	7716699:7716807:7717868:7717944:7718167:7718504,7706214:7706365:7717868:7717944:7718167:7718245,	7717869	7717944	7717892	7717892	Nonsense_Mutation	C	T	p.R80*
SKCM	TCGA-EE-A2MR-06	SLC12A3	ENST00000563236.1,ENST00000262502.5,ENST00000566786.1,ENST00000438926.2	chr16	56916377:56916409:56917960:56918116:56919176:56919276,	56917961	56918116	56917964	56917964	Nonsense_Mutation	G	A	p.W558*
SKCM	TCGA-EE-A2MR-06	RPP14	ENST00000481972.1	chr3	58292246:58292378:58296233:58296318:58302241:58302299,58292040:58292144:58296233:58296318:58302241:58302299,	58296234	58296318	58296241	58296241	Nonsense_Mutation	C	T	p.Q29*
SKCM	TCGA-EE-A2MR-06	SLC13A3	ENST00000472148.1,ENST00000396360.1	chr20	45212210:45212308:45217798:45217894:45221042:45221085,	45217799	45217894	45217842	45217842	Nonsense_Mutation	G	A	p.R325*
SKCM	TCGA-EE-A2MR-06	POLN	ENST00000511098.1,ENST00000511885.2,ENST00000382865.1	chr4	2130905:2130983:2132959:2133017:2158514:2158580,	2132960	2133017	2132987	2132987	Nonsense_Mutation	G	A	p.Q588*
SKCM	TCGA-EE-A2MR-06	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6	chr2	109102966:109103104:109104154:109104276:109106293:109106470,	109104155	109104276	109104200	109104200	Nonsense_Mutation	C	T	p.R1326*
SKCM	TCGA-EE-A2MR-06	MOSPD3	ENST00000462372.1,ENST00000393950.2,ENST00000424091.2,ENST00000223054.4,ENST00000379527.2	chr7	100211129:100211329:100212489:100212654:100212774:100212949,	100212490	100212654	100212532	100212532	Nonsense_Mutation	T	A	p.L185*
SKCM	TCGA-EE-A2MR-06	ABCG8	ENST00000272286.2	chr2	44071645:44071747:44073293:44073450:44078722:44078961,	44073294	44073450	44073309	44073309	Nonsense_Mutation	C	T	p.Q61*
SKCM	TCGA-EE-A2MR-06	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580448	7580448	Nonsense_Mutation	G	A	p.W1342*
SKCM	TCGA-EE-A2MR-06	LAMP3	ENST00000466939.1,ENST00000265598.3	chr3	182858325:182858383:182870162:182870291:182871469:182872179,	182870163	182870291	182870195	182870195	Nonsense_Mutation	G	A	p.Q286*
SKCM	TCGA-EE-A2MR-06	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726466	71726466	Nonsense_Mutation	G	A	p.Q695*
SKCM	TCGA-EE-A2MR-06	HPSE2	ENST00000370552.3,ENST00000370546.1	chr10	100481413:100481585:100903994:100904156:100992104:100992262,100503639:100503813:100903994:100904156:100992104:100992262,	100903995	100904156	100904148	100904148	Nonsense_Mutation	G	A	p.R153*
SKCM	TCGA-EE-A2MR-06	AKAP13	ENST00000394518.2,ENST00000361243.2,ENST00000559362.1	chr15	86064658:86064806:86076814:86077111:86087002:86087186,	86076815	86077111	86076916	86076916	Nonsense_Mutation	G	T	p.E95*
SKCM	TCGA-EE-A2MR-06	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153911375:153911521:153912064:153912280:153912631:153912732,	153912065	153912280	153912185	153912185	Nonsense_Mutation	G	A	p.Q567*
SKCM	TCGA-EE-A2MR-06	FLVCR1	ENST00000366971.4	chr1	213037066:213037211:213046019:213046160:213056712:213056780,	213046020	213046160	213046070	213046070	Nonsense_Mutation	C	T	p.Q312*
SKCM	TCGA-EE-A2MR-06	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680349	6680349	Nonsense_Mutation	C	T	p.R210*
SKCM	TCGA-EE-A2MR-06	RPL7	ENST00000396465.1,ENST00000396467.1,ENST00000396466.1,ENST00000352983.2	chr8	74203786:74203896:74204007:74204145:74204473:74204631,	74204008	74204145	74204120	74204120	Nonsense_Mutation	G	A	p.R66*
SKCM	TCGA-EE-A2MR-06	SYBU	ENST00000419099.1,ENST00000446070.2,ENST00000528647.1,ENST00000533895.1,ENST00000529190.1,ENST00000533821.1,ENST00000534184.1	chr8	110631212:110631268:110654956:110655158:110656864:110656945,	110654957	110655158	110655122	110655122	Nonsense_Mutation	G	A	p.R19*
SKCM	TCGA-EE-A2MR-06	SYBU	ENST00000433638.1,ENST00000533171.1,ENST00000408908.2,ENST00000422135.1,ENST00000276646.9,ENST00000440310.1,ENST00000534501.1,ENST00000528716.1,ENST00000531284.1,ENST00000524720.1	chr8	110631212:110631268:110654956:110655161:110656864:110656945,	110654957	110655161	110655122	110655122	Nonsense_Mutation	G	A	p.R19*
SKCM	TCGA-EE-A2MR-06	SYBU	ENST00000424158.2	chr8	110631212:110631268:110654956:110655176:110656864:110656945,	110654957	110655176	110655122	110655122	Nonsense_Mutation	G	A	p.R19*
SKCM	TCGA-EE-A2MR-06	NPR1	ENST00000368680.3	chr1	153662759:153662858:153665581:153665673:153665827:153666468,	153665582	153665673	153665653	153665653	Nonsense_Mutation	C	T	p.R1035*
SKCM	TCGA-EE-A2MR-06	ALKBH1	ENST00000555100.1	chr14	78141998:78142192:78146222:78146313:78170711:78170795,78141998:78142137:78146222:78146313:78170711:78170795,	78146223	78146313	78146285	78146285	Nonsense_Mutation	G	A	p.R162*
SKCM	TCGA-EE-A2MR-06	CLEC4M	ENST00000248228.4,ENST00000598879.1,ENST00000597522.1,ENST00000357361.2	chr19	7828152:7828198:7828278:7828362:7830523:7830679,7828152:7828198:7828278:7828362:7830070:7830135,	7828279	7828362	7828326	7828326	Nonsense_Mutation	C	T	p.Q32*
SKCM	TCGA-EE-A2MR-06	FANCA	ENST00000389301.3,ENST00000568369.1	chr16	89828356:89828430:89831297:89831474:89833548:89833555,	89831298	89831474	89831327	89831327	Nonsense_Mutation	G	A	p.R917*
SKCM	TCGA-EE-A2MR-06	MMP7	ENST00000533366.1,ENST00000531200.1	chr11	102398254:102398403:102398487:102398714:102401323:102401478,	102398488	102398714	102398512	102398512	Nonsense_Mutation	C	T	p.W104*
SKCM	TCGA-D3-A8GM-06	FAM160A2	ENST00000265978.4	chr11	6239034:6239380:6239787:6239993:6240200:6240280,	6239788	6239993	6239923	6239923	Nonsense_Mutation	G	A	p.R448*
SKCM	TCGA-D3-A8GM-06	FAM160A2	ENST00000524416.1,ENST00000449352.2	chr11	6239034:6239380:6239829:6239993:6240200:6240280,	6239830	6239993	6239923	6239923	Nonsense_Mutation	G	A	p.R448*
SKCM	TCGA-D3-A8GM-06	SYT15	ENST00000374323.4	chr10	46967425:46967721:46968580:46968723:46970441:46970484,	46968581	46968723	46968648	46968648	Nonsense_Mutation	C	T	p.W149*
SKCM	TCGA-D3-A8GM-06	COL1A2	ENST00000297268.6,ENST00000488121.1	chr7	94055821:94055842:94056319:94056373:94056499:94056607,	94056320	94056373	94056335	94056335	Nonsense_Mutation	C	T	p.Q1041*
SKCM	TCGA-D3-A8GM-06	COL1A2	ENST00000481570.1	chr7	94055309:94055363:94055734:94056373:94056499:94056571,	94055735	94056373	94056335	94056335	Nonsense_Mutation	C	T	p.Q1041*
SKCM	TCGA-D3-A8GM-06	RANBP2	ENST00000283195.6	chr2	109352559:109352705:109356944:109357137:109363166:109363254,	109356945	109357137	109357090	109357090	Nonsense_Mutation	C	T	p.R310*
SKCM	TCGA-D3-A8GM-06	EAF2	ENST00000273668.2,ENST00000490434.1	chr3	121575857:121576003:121591383:121591635:121605188:121605315,	121591384	121591635	121591602	121591602	Nonsense_Mutation	C	T	p.R235*
SKCM	TCGA-D3-A8GM-06	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000447967.2,ENST00000454282.1,ENST00000520850.1,ENST00000508762.1	chr5	72168494:72168547:72171441:72171564:72173054:72173173,	72171442	72171564	72171523	72171523	Nonsense_Mutation	C	T	p.R254*
SKCM	TCGA-D3-A8GM-06	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33200813:33201052:33208812:33209012:33209172:33209313,	33208813	33209012	33208907	33208907	Nonsense_Mutation	G	A	p.Q459*
SKCM	TCGA-D3-A8GM-06	DHRS2	ENST00000250383.6,ENST00000556729.1,ENST00000556701.1	chr14	24113617:24113752:24114035:24114091:24114350:24114846,	24114036	24114091	24114059	24114059	Nonsense_Mutation	G	A	p.W233*
SKCM	TCGA-D3-A8GM-06	TIGIT	ENST00000481065.1,ENST00000383671.3,ENST00000486257.1	chr3	114012874:114012969:114014391:114014721:114018443:114018550,	114014392	114014721	114014616	114014616	Nonsense_Mutation	C	T	p.Q163*
SKCM	TCGA-D3-A8GM-06	NOL11	ENST00000253247.4,ENST00000577687.1,ENST00000580833.1,ENST00000581375.1,ENST00000535137.1	chr17	65732781:65732870:65733186:65733261:65733623:65733733,	65733187	65733261	65733238	65733238	Nonsense_Mutation	A	T	p.K399*
SKCM	TCGA-D3-A8GM-06	RIPK4	ENST00000352483.2	chr21	43171256:43171405:43176684:43176976:43187019:43187266,	43176685	43176976	43176801	43176801	Nonsense_Mutation	G	A	p.R120*
SKCM	TCGA-D3-A8GM-06	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430293	115430293	Nonsense_Mutation	C	T	p.Q413*
SKCM	TCGA-D3-A8GM-06	PHKG1	ENST00000537360.1,ENST00000395428.2	chr7	56151342:56151408:56155290:56155469:56156551:56156668,	56155291	56155469	56155386	56155386	Nonsense_Mutation	C	T	p.W20*
SKCM	TCGA-D3-A8GM-06	CUX2	ENST00000261726.6	chr12	111760224:111760384:111772244:111772514:111776089:111776278,	111772245	111772514	111772383	111772383	Nonsense_Mutation	C	A	p.S1022*
SKCM	TCGA-D3-A8GM-06	EMID1	ENST00000404820.3,ENST00000430127.1,ENST00000484039.1,ENST00000334018.6,ENST00000404755.3	chr22	29622478:29622540:29627008:29627129:29627581:29627604,	29627009	29627129	29627083	29627083	Nonsense_Mutation	G	A	p.W180*
SKCM	TCGA-D3-A8GM-06	IL7R	ENST00000509668.1,ENST00000303115.3	chr5	35873635:35873750:35874550:35874644:35875613:35875623,	35874551	35874644	35874636	35874636	Nonsense_Mutation	G	A	p.W264*
SKCM	TCGA-D3-A8GM-06	KLHL20	ENST00000209884.4	chr1	173685141:173685205:173702851:173703425:173720902:173721061,	173702852	173703425	173702865	173702865	Nonsense_Mutation	C	T	p.R13*
SKCM	TCGA-D3-A8GM-06	OS9	ENST00000315970.7,ENST00000547079.1,ENST00000435406.2,ENST00000257966.8,ENST00000413095.2,ENST00000389146.6,ENST00000551035.1,ENST00000389142.5,ENST00000553208.1,ENST00000550793.1,ENST00000552787.1	chr12	58087942:58088106:58088532:58088709:58089562:58089626,	58088533	58088709	58088617	58088617	Nonsense_Mutation	C	T	p.Q83*
SKCM	TCGA-D3-A8GM-06	OS9	ENST00000550848.1,ENST00000551285.1	chr12	58087942:58088106:58088488:58088709:58089562:58089626,	58088489	58088709	58088617	58088617	Nonsense_Mutation	C	T	p.Q83*
SKCM	TCGA-D3-A8GM-06	ZNF823	ENST00000341191.6	chr19	11833927:11834157:11835008:11835069:11849631:11849697,11833927:11834157:11835008:11835069:11836015:11836142,	11835009	11835069	11835037	11835037	Nonsense_Mutation	G	A	p.Q55*
SKCM	TCGA-D3-A8GM-06	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112550	57112550	Nonsense_Mutation	G	A	p.R922*
SKCM	TCGA-D3-A8GM-06	ANKFY1	ENST00000433651.1,ENST00000572412.1,ENST00000341657.4,ENST00000574367.1,ENST00000570934.1,ENST00000570535.1	chr17	4111227:4111377:4113118:4113242:4120277:4120413,	4113119	4113242	4113187	4113187	Nonsense_Mutation	G	A	p.Q172*
SKCM	TCGA-D3-A8GM-06	ENDOU	ENST00000229003.3,ENST00000422538.3,ENST00000545824.2	chr12	48104230:48104702:48105415:48105558:48106298:48106405,	48105416	48105558	48105518	48105518	Nonsense_Mutation	C	T	p.W338*
SKCM	TCGA-D3-A8GM-06	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96859619	96859619	Nonsense_Mutation	T	A	p.C203*
SKCM	TCGA-D3-A8GM-06	ATP13A4	ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000392443.3	chr3	193210878:193210949:193220281:193220428:193232486:193232660,	193220282	193220428	193220405	193220405	Nonsense_Mutation	C	T	p.W86*
SKCM	TCGA-D3-A8GM-06	FARSA	ENST00000586280.1	chr19	13041036:13041155:13041242:13041563:13044363:13044494,	13041243	13041563	13041440	13041440	Nonsense_Mutation	G	A	p.Q131*
SKCM	TCGA-D3-A8GM-06	CFTR	ENST00000446805.1,ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117144306:117144417:117149087:117149196:117170952:117171032,	117149088	117149196	117149094	117149094	Nonsense_Mutation	G	A	p.W57*
SKCM	TCGA-D3-A8GM-06	ARHGEF25	ENST00000333972.7,ENST00000286494.4	chr12	58008113:58008183:58008298:58008388:58008471:58008564,	58008299	58008388	58008350	58008350	Nonsense_Mutation	G	T	p.E260*
SKCM	TCGA-D3-A8GM-06	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000381414.4	chr16	19481002:19481147:19483409:19483565:19485446:19485556,	19483410	19483565	19483431	19483431	Nonsense_Mutation	C	T	p.Q602*
SKCM	TCGA-D3-A8GM-06	BLVRA	ENST00000265523.4,ENST00000402924.1	chr7	43840063:43840171:43843274:43843446:43846575:43846938,	43843275	43843446	43843403	43843403	Nonsense_Mutation	C	T	p.Q197*
SKCM	TCGA-D3-A8GM-06	NOP2	ENST00000382421.3,ENST00000537442.1,ENST00000545200.1,ENST00000399466.2,ENST00000541778.1,ENST00000322166.5,ENST00000542015.1	chr12	6669369:6669492:6669612:6669735:6669863:6669909,	6669613	6669735	6669702	6669702	Nonsense_Mutation	G	A	p.Q487*
SKCM	TCGA-D3-A8GM-06	RNF213	ENST00000336301.6,ENST00000508628.2,ENST00000582970.1	chr17	78318477:78322086:78323569:78323706:78324100:78324196,	78323570	78323706	78323688	78323688	Nonsense_Mutation	C	A	p.S3357*
SKCM	TCGA-D3-A8GM-06	ABAT	ENST00000425191.2,ENST00000567812.1,ENST00000396600.2,ENST00000268251.8,ENST00000569156.1,ENST00000566590.1	chr16	8857925:8858006:8858594:8858687:8860064:8860127,	8858595	8858687	8858680	8858680	Nonsense_Mutation	G	A	p.W178*
SKCM	TCGA-D3-A8GM-06	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251784	81251784	Nonsense_Mutation	G	A	p.Q556*
SKCM	TCGA-D3-A8GM-06	SPC25	ENST00000282074.2,ENST00000451987.1	chr2	169733747:169733894:169745735:169745801:169745896:169746043,	169745736	169745801	169745769	169745769	Nonsense_Mutation	G	A	p.R56*
SKCM	TCGA-D3-A8GM-06	POMT1	ENST00000419118.2	chr9	134379575:134379727:134381789:134381840:134382754:134382901,134378395:134378460:134381789:134381840:134384297:134384409,	134381790	134381840	134381806	134381806	Nonsense_Mutation	C	T	p.R47*
SKCM	TCGA-D3-A8GM-06	SCARA3	ENST00000301904.3	chr8	27514298:27514397:27516012:27517056:27528416:27530537,	27516013	27517056	27516386	27516386	Nonsense_Mutation	G	A	p.W233*
SKCM	TCGA-D3-A8GM-06	BTF3	ENST00000335895.8,ENST00000380591.3,ENST00000508901.1	chr5	72794958:72795027:72798312:72798426:72798740:72798820,	72798313	72798426	72798325	72798325	Nonsense_Mutation	A	T	p.R72*
SKCM	TCGA-D3-A8GM-06	IKBIP	ENST00000299157.4	chr12	99007182:99008118:99028073:99028191:99038300:99038732,99018026:99020544:99028073:99028191:99038300:99038732,	99028074	99028191	99028148	99028148	Nonsense_Mutation	G	A	p.Q75*
SKCM	TCGA-D3-A8GM-06	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113169765	113169765	Nonsense_Mutation	C	T	p.W2705*
SKCM	TCGA-D3-A8GM-06	UGGT2	ENST00000376747.3	chr13	96547433:96547558:96553060:96553192:96555107:96555314,	96553061	96553192	96553135	96553135	Nonsense_Mutation	G	A	p.R854*
SKCM	TCGA-D3-A8GM-06	MYO7B	ENST00000428314.1,ENST00000389524.4,ENST00000409816.2	chr2	128324217:128324402:128327363:128327485:128331494:128331637,	128327364	128327485	128327444	128327444	Nonsense_Mutation	G	A	p.W184*
SKCM	TCGA-D3-A8GM-06	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603464	111603464	Nonsense_Mutation	G	A	p.W180*
SKCM	TCGA-D3-A8GM-06	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000397910.4,ENST00000601404.1	chr19	8976259:8976432:8976580:8976648:8976738:8976804,	8976581	8976648	8976633	8976633	Nonsense_Mutation	G	A	p.Q14115*
SKCM	TCGA-D3-A8GM-06	TBC1D5	ENST00000429383.4,ENST00000446818.2,ENST00000253692.7,ENST00000429924.2	chr3	17279654:17279911:17299997:17300083:17333386:17333493,	17299998	17300083	17300059	17300059	Nonsense_Mutation	G	A	p.Q424*
SKCM	TCGA-D3-A8GM-06	ECSIT	ENST00000417981.2,ENST00000585318.1,ENST00000270517.7,ENST00000592571.1	chr19	11618304:11618377:11618516:11618665:11618805:11618863,	11618517	11618665	11618648	11618648	Nonsense_Mutation	G	A	p.Q272*
SKCM	TCGA-D3-A8GM-06	CHIT1	ENST00000513472.1,ENST00000484834.1,ENST00000367229.1,ENST00000503786.1,ENST00000491855.1	chr1	203192715:203192788:203194175:203194232:203194796:203194998,	203194176	203194232	203194194	203194194	Nonsense_Mutation	C	T	p.W99*
SKCM	TCGA-D3-A8GM-06	REG1B	ENST00000305089.3,ENST00000479258.1	chr2	79313492:79313630:79313937:79314056:79314674:79314784,	79313938	79314056	79313950	79313950	Nonsense_Mutation	C	T	p.W57*
SKCM	TCGA-D3-A51G-06	CSMD1	ENST00000519623.1,ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2857500:2857653:2875998:2876172:2886840:2887035,	2875999	2876172	2876008	2876008	Nonsense_Mutation	G	A	p.R2675*
SKCM	TCGA-D3-A51G-06	HSD17B2	ENST00000199936.4,ENST00000568090.1	chr16	82104546:82104732:82124506:82124644:82131679:82131946,	82124507	82124644	82124623	82124623	Nonsense_Mutation	C	T	p.Q261*
SKCM	TCGA-D3-A51G-06	ITPKB	ENST00000429204.1,ENST00000272117.3	chr1	226819390:226822587:226825379:226825451:226827257:226827359,	226825380	226825451	226825421	226825421	Nonsense_Mutation	G	A	p.R862*
SKCM	TCGA-D3-A51G-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
SKCM	TCGA-D3-A51G-06	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231101797:231101975:231102927:231103096:231103475:231103642,231101797:231101975:231102927:231103096:231106118:231106202,	231102928	231103096	231102934	231102934	Nonsense_Mutation	C	T	p.Q82*
SKCM	TCGA-D3-A51G-06	KIAA1217	ENST00000376462.1,ENST00000376454.3	chr10	24762156:24762989:24783428:24783533:24784075:24784125,	24783429	24783533	24783481	24783481	Nonsense_Mutation	C	T	p.Q578*
SKCM	TCGA-D3-A51G-06	OCLN	ENST00000396442.2,ENST00000355237.2	chr5	68800027:68800121:68809774:68809936:68830520:68830666,68804967:68805646:68809774:68809936:68830520:68830666,	68809775	68809936	68809847	68809847	Nonsense_Mutation	C	T	p.R268*
SKCM	TCGA-D3-A51G-06	RAB11FIP1	ENST00000330843.4	chr8	37732032:37732840:37734626:37735069:37756588:37756972,	37734627	37735069	37734744	37734744	Nonsense_Mutation	G	A	p.Q233*
SKCM	TCGA-D3-A51G-06	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000443826.3	chr19	2997921:2997953:3000644:3000721:3002350:3002471,	3000645	3000721	3000675	3000675	Nonsense_Mutation	C	T	p.W698*
SKCM	TCGA-D3-A51G-06	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000437809.1,ENST00000361040.5,ENST00000271883.5	chr1	155792237:155792267:155796627:155796819:155823066:155823196,	155796628	155796819	155796745	155796745	Nonsense_Mutation	G	A	p.Q194*
SKCM	TCGA-D3-A51G-06	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100533126:100533238:100568677:100568881:100587885:100588012,	100568678	100568881	100568703	100568703	Nonsense_Mutation	C	T	p.R1616*
SKCM	TCGA-EB-A5SG-06	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101226046:101226146:101232506:101232659:101237400:101237567,	101232507	101232659	101232634	101232634	Nonsense_Mutation	C	T	p.Q555*
SKCM	TCGA-EB-A5SG-06	MERTK	ENST00000439966.1	chr2	112656240:112656373:112686696:112686881:112702536:112702637,	112686697	112686881	112686787	112686787	Nonsense_Mutation	T	A	p.L51*
SKCM	TCGA-EB-A5SG-06	MERTK	ENST00000421804.2	chr2	112656240:112656373:112686696:112687117:112702536:112702637,	112686697	112687117	112686787	112686787	Nonsense_Mutation	T	A	p.L51*
SKCM	TCGA-EB-A5SG-06	BTN3A1	ENST00000082468.7,ENST00000425234.2,ENST00000289361.6,ENST00000476549.2	chr6	26406136:26406484:26407898:26408180:26409760:26409961,	26407899	26408180	26407991	26407991	Nonsense_Mutation	C	T	p.Q176*
SKCM	TCGA-BF-A1PZ-01	C1orf194	ENST00000369949.4,ENST00000369942.2	chr1	109649628:109649744:109650542:109650659:109656254:109656457,	109650543	109650659	109650609	109650609	Nonsense_Mutation	C	T	p.W32*
SKCM	TCGA-BF-A1PZ-01	C1orf194	ENST00000369949.4,ENST00000369942.2	chr1	109649628:109649744:109650542:109650659:109656254:109656457,	109650543	109650659	109650610	109650610	Nonsense_Mutation	C	T	p.W32*
SKCM	TCGA-BF-A1PZ-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681012	161681012	Nonsense_Mutation	C	T	p.Q106*
SKCM	TCGA-BF-A1PZ-01	FCRLA	ENST00000540926.1,ENST00000367953.3,ENST00000367959.2,ENST00000236938.6	chr1	161680549:161680702:161680997:161681264:161682874:161683242,161680549:161680702:161680997:161681264:161681723:161682008,	161680998	161681264	161681012	161681012	Nonsense_Mutation	C	T	p.Q106*
SKCM	TCGA-BF-A1PZ-01	HMBOX1	ENST00000560599.1,ENST00000558662.1,ENST00000518080.1,ENST00000519047.1,ENST00000403668.2,ENST00000397358.3,ENST00000523613.1,ENST00000444075.1,ENST00000524238.1,ENST00000521516.1,ENST00000287701.10,ENST00000355231.5	chr8	28827952:28828036:28837587:28837673:28866588:28866699,	28837588	28837673	28837649	28837649	Nonsense_Mutation	C	T	p.Q188*
SKCM	TCGA-BF-A1PZ-01	ZNF385D	ENST00000281523.2	chr3	21552352:21552515:21606065:21606176:21706377:21706520,	21606066	21606176	21606113	21606113	Nonsense_Mutation	T	A	p.K77*
SKCM	TCGA-BF-A1PZ-01	KIF16B	ENST00000408042.1,ENST00000355755.3,ENST00000378003.2,ENST00000354981.2	chr20	16352309:16352406:16354901:16355054:16359449:16360808,	16354902	16355054	16355038	16355038	Nonsense_Mutation	G	A	p.Q1072*
SKCM	TCGA-GF-A6C9-06	ANO4	ENST00000392977.3,ENST00000392979.3,ENST00000550015.1,ENST00000299222.9	chr12	101505340:101505488:101510456:101510576:101514297:101514403,	101510457	101510576	101510497	101510497	Nonsense_Mutation	C	T	p.R796*
SKCM	TCGA-GF-A6C9-06	DCDC1	ENST00000597505.1,ENST00000437348.1,ENST00000342355.4	chr11	31086015:31086173:31086565:31086700:31099411:31099472,	31086566	31086700	31086609	31086609	Nonsense_Mutation	C	T	p.W797*
SKCM	TCGA-GF-A6C9-06	ARMC3	ENST00000376528.4,ENST00000298032.5,ENST00000409983.3	chr10	23319559:23319725:23321789:23321952:23326198:23326495,	23321790	23321952	23321935	23321935	Nonsense_Mutation	C	T	p.R798*
SKCM	TCGA-GF-A6C9-06	UBE2N	ENST00000549490.1	chr12	93803576:93803855:93804509:93804650:93804828:93805075,93803576:93803855:93804509:93804650:93804901:93805075,	93804510	93804650	93804643	93804643	Nonsense_Mutation	C	T	p.W95*
SKCM	TCGA-GF-A6C9-06	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84611654:84611834:84639235:84639389:84651024:84651057,	84639236	84639389	84639263	84639263	Nonsense_Mutation	C	T	p.Q840*
SKCM	TCGA-GF-A6C9-06	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264085	1264085	Nonsense_Mutation	G	A	p.W1995*
SKCM	TCGA-GF-A6C9-06	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65409525:65409780:65411971:65412140:65413343:65413480,	65411972	65412140	65412046	65412046	Nonsense_Mutation	C	T	p.R434*
SKCM	TCGA-GF-A6C9-06	HPR	ENST00000561690.1,ENST00000540303.2,ENST00000566168.1	chr16	72097127:72097159:72107790:72107876:72108182:72108284,	72107791	72107876	72107824	72107824	Nonsense_Mutation	G	A	p.W13*
SKCM	TCGA-GF-A6C9-06	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157667021	157667021	Nonsense_Mutation	C	T	p.W251*
SKCM	TCGA-GF-A6C9-06	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157667021	157667021	Nonsense_Mutation	C	T	p.W251*
SKCM	TCGA-GF-A6C9-06	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157667021	157667021	Nonsense_Mutation	C	T	p.W251*
SKCM	TCGA-GF-A6C9-06	C21orf58	ENST00000397679.1,ENST00000417060.1,ENST00000397680.1,ENST00000491666.1,ENST00000397682.3,ENST00000291691.7,ENST00000397683.1	chr21	47722398:47722490:47731369:47731481:47734629:47734794,	47731370	47731481	47731394	47731394	Nonsense_Mutation	G	A	p.Q233*
SKCM	TCGA-GF-A6C9-06	SLC22A10	ENST00000332793.6	chr11	63066985:63067101:63069800:63070015:63071579:63071688,	63069801	63070015	63069907	63069907	Nonsense_Mutation	C	T	p.R393*
SKCM	TCGA-GF-A6C9-06	IL2RA	ENST00000379959.3	chr10	6061832:6061904:6063440:6063656:6066206:6066317,	6063441	6063656	6063631	6063631	Nonsense_Mutation	C	T	p.W131*
SKCM	TCGA-GF-A6C9-06	IL2RA	ENST00000256876.6	chr10	6061832:6061904:6063467:6063656:6066206:6066317,	6063468	6063656	6063631	6063631	Nonsense_Mutation	C	T	p.W131*
SKCM	TCGA-GF-A6C9-06	CD38	ENST00000510674.1	chr4	15818218:15818263:15826503:15826621:15835839:15835925,	15826504	15826621	15826515	15826515	Nonsense_Mutation	G	A	p.W125*
SKCM	TCGA-GF-A6C9-06	CD38	ENST00000226279.3	chr4	15818218:15818263:15826503:15826639:15835839:15835925,	15826504	15826639	15826515	15826515	Nonsense_Mutation	G	A	p.W125*
SKCM	TCGA-GF-A6C9-06	NPHP3	ENST00000474871.1	chr3	132402242:132402368:132403397:132405231:132405994:132406070,	132403398	132405231	132403493	132403493	Nonsense_Mutation	C	A	p.E1159*
SKCM	TCGA-GF-A6C9-06	NPHP3	ENST00000326682.8,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132402242:132402368:132403397:132403638:132405103:132405231,	132403398	132403638	132403493	132403493	Nonsense_Mutation	C	A	p.E1159*
SKCM	TCGA-GF-A6C9-06	TTLL9	ENST00000375938.4,ENST00000375922.4,ENST00000535842.1,ENST00000310998.4,ENST00000375934.4	chr20	30521602:30521661:30522494:30522691:30525198:30525312,	30522495	30522691	30522560	30522560	Nonsense_Mutation	G	A	p.W259*
SKCM	TCGA-GF-A6C9-06	SCML4	ENST00000459992.1,ENST00000440927.1	chr6	108070887:108071017:108076774:108076868:108145329:108145490,108070887:108071017:108076774:108076868:108093375:108093455,	108076775	108076868	108076820	108076820	Nonsense_Mutation	C	T	p.W8*
SKCM	TCGA-GF-A6C9-06	GALNT14	ENST00000481023.1,ENST00000486564.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31165066:31165170:31167723:31167808:31168648:31168736,	31167724	31167808	31167798	31167798	Nonsense_Mutation	C	T	p.W251*
SKCM	TCGA-GF-A6C9-06	PIWIL1	ENST00000245255.3	chr12	130839432:130839550:130840097:130840212:130841462:130841650,	130840098	130840212	130840207	130840207	Nonsense_Mutation	A	T	p.K467*
SKCM	TCGA-GF-A6C9-06	KLK2	ENST00000594174.1	chr19	51376713:51376775:51377976:51378222:51379727:51379813,	51377977	51378222	51378066	51378066	Nonsense_Mutation	G	T	p.G46*
SKCM	TCGA-GF-A6C9-06	KLK2	ENST00000597439.1,ENST00000600755.1,ENST00000325321.3,ENST00000358049.4	chr19	51376438:51376510:51377976:51378136:51379727:51379813,51376713:51376775:51377976:51378136:51379727:51379813,	51377977	51378136	51378066	51378066	Nonsense_Mutation	G	T	p.G46*
SKCM	TCGA-GF-A6C9-06	CTSV	ENST00000538255.1,ENST00000259470.5	chr9	99798804:99799029:99799533:99799680:99799774:99799897,	99799534	99799680	99799644	99799644	Nonsense_Mutation	G	A	p.R96*
SKCM	TCGA-GF-A6C9-06	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105412337:105412432:105420937:105421303:105422831:105423017,	105420938	105421303	105421075	105421075	Nonsense_Mutation	G	A	p.R608*
SKCM	TCGA-GF-A6C9-06	EGFLAM	ENST00000322350.5,ENST00000354891.3,ENST00000336740.6	chr5	38412605:38412750:38418167:38418357:38425068:38425194,	38418168	38418357	38418267	38418267	Nonsense_Mutation	C	T	p.Q532*
SKCM	TCGA-EE-A2MK-06	RUVBL2	ENST00000601968.1,ENST00000413176.2,ENST00000594017.1,ENST00000595090.1,ENST00000596247.1,ENST00000594338.1,ENST00000221413.6,ENST00000593570.1	chr19	49510274:49510404:49510558:49510625:49513032:49513128,	49510559	49510625	49510599	49510599	Nonsense_Mutation	C	T	p.Q101*
SKCM	TCGA-EE-A2MK-06	PLCB1	ENST00000378641.3	chr20	8770824:8770908:8782702:8782820:8862268:8865547,	8782703	8782820	8782784	8782784	Nonsense_Mutation	C	T	p.Q1169*
SKCM	TCGA-EE-A2MK-06	TPM1	ENST00000404484.4,ENST00000558544.1,ENST00000317516.7,ENST00000288398.6,ENST00000560959.1,ENST00000558347.1,ENST00000560615.1,ENST00000358278.3,ENST00000559397.1	chr15	63353067:63353138:63353396:63353472:63353911:63353987,63353067:63353138:63353396:63353472:63354413:63354476,	63353397	63353472	63353404	63353404	Nonsense_Mutation	C	T	p.R191*
SKCM	TCGA-EE-A2MK-06	THBS2	ENST00000366787.3	chr6	169639693:169639790:169640546:169640687:169641856:169642053,	169640547	169640687	169640626	169640626	Nonsense_Mutation	G	C	p.S318*
SKCM	TCGA-EE-A2GE-06	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1	chr1	17320123:17320330:17322470:17322659:17322748:17322778,	17322471	17322659	17322554	17322554	Nonsense_Mutation	G	A	p.R482*
SKCM	TCGA-EE-A2GE-06	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2	chr16	16280980:16281068:16282687:16282831:16284020:16284224,	16282688	16282831	16282690	16282690	Nonsense_Mutation	G	A	p.Q593*
SKCM	TCGA-EE-A29A-06	HYDIN	ENST00000393567.2,ENST00000378856.4	chr16	70894591:70894804:70895950:70896158:70896987:70897073,	70895951	70896158	70896141	70896141	Nonsense_Mutation	G	A	p.Q3863*
SKCM	TCGA-EE-A29A-06	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962686	21962686	Nonsense_Mutation	C	T	p.Q487*
SKCM	TCGA-EE-A29A-06	MLLT10	ENST00000438473.1	chr10	21959377:21959633:21962569:21962848:21970260:21970305,	21962570	21962848	21962686	21962686	Nonsense_Mutation	C	T	p.Q487*
SKCM	TCGA-FS-A1ZW-06	ACTR8	ENST00000335754.3,ENST00000482349.1	chr3	53906410:53906551:53907058:53907154:53908237:53908391,	53907059	53907154	53907082	53907082	Nonsense_Mutation	G	A	p.R380*
SKCM	TCGA-FS-A1ZW-06	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62838946:62839840:62842558:62842693:62843400:62843491,	62842559	62842693	62842672	62842672	Nonsense_Mutation	A	T	p.K469*
SKCM	TCGA-FS-A1ZW-06	SLC13A1	ENST00000439260.1,ENST00000539873.1,ENST00000427975.1,ENST00000194130.2	chr7	122765622:122765729:122768898:122769000:122769436:122769535,	122768899	122769000	122768996	122768996	Nonsense_Mutation	G	A	p.Q346*
SKCM	TCGA-FS-A1ZW-06	KHSRP	ENST00000599395.1,ENST00000595112.1,ENST00000595548.1,ENST00000398148.3	chr19	6418493:6418592:6418712:6418887:6419213:6419271,	6418713	6418887	6418802	6418802	Nonsense_Mutation	G	A	p.Q231*
SKCM	TCGA-FS-A1ZW-06	CCT7	ENST00000398422.2,ENST00000258091.5,ENST00000540468.1,ENST00000538797.1,ENST00000539919.1,ENST00000537131.1	chr2	73476118:73476307:73476946:73477044:73477433:73477566,	73476947	73477044	73477004	73477004	Nonsense_Mutation	C	T	p.R300*
SKCM	TCGA-FS-A1ZW-06	IFT57	ENST00000264538.3	chr3	107884281:107884340:107885700:107885832:107886639:107886711,	107885701	107885832	107885736	107885736	Nonsense_Mutation	G	A	p.Q316*
SKCM	TCGA-FS-A1ZW-06	RNF130	ENST00000522208.2,ENST00000521389.1,ENST00000261947.4	chr5	179407128:179407200:179440060:179440311:179467452:179467647,	179440061	179440311	179440119	179440119	Nonsense_Mutation	C	T	p.W212*
SKCM	TCGA-FS-A1ZW-06	RBM11	ENST00000468788.1	chr21	15588498:15588603:15591873:15592046:15593417:15593490,	15591874	15592046	15592040	15592040	Nonsense_Mutation	C	T	p.R85*
SKCM	TCGA-FS-A1ZW-06	RBM11	ENST00000400577.3,ENST00000461088.1	chr21	15588498:15588603:15591883:15592046:15593417:15593490,	15591884	15592046	15592040	15592040	Nonsense_Mutation	C	T	p.R85*
SKCM	TCGA-FS-A1ZW-06	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91718698:91718843:91722410:91722630:91724336:91724487,	91722411	91722630	91722539	91722539	Nonsense_Mutation	G	T	p.E3167*
SKCM	TCGA-FS-A1ZW-06	SPAG16	ENST00000374309.3,ENST00000331683.5,ENST00000452556.1,ENST00000406979.2	chr2	214727208:214727352:214794683:214794869:214878674:214878801,	214794684	214794869	214794732	214794732	Nonsense_Mutation	G	A	p.W421*
SKCM	TCGA-FR-A726-01	EXD2	ENST00000409018.3,ENST00000449989.1,ENST00000312994.5,ENST00000409675.1,ENST00000409014.1,ENST00000409949.1,ENST00000409242.1	chr14	69697188:69697315:69701416:69701748:69702762:69702869,	69701417	69701748	69701576	69701576	Nonsense_Mutation	C	T	p.R168*
SKCM	TCGA-FR-A726-01	EXD2	ENST00000492815.1	chr14	69697188:69697315:69701490:69701748:69702762:69702869,	69701491	69701748	69701576	69701576	Nonsense_Mutation	C	T	p.R168*
SKCM	TCGA-FR-A726-01	TATDN3	ENST00000525569.1,ENST00000366973.4	chr1	212977960:212977993:212981077:212981190:212985568:212985670,212977960:212977993:212981077:212981190:212985589:212985624,212977960:212977993:212981077:212981190:212985592:212985670,	212981078	212981190	212981151	212981151	Nonsense_Mutation	C	A	p.Y187*
SKCM	TCGA-FR-A726-01	MIOX	ENST00000395732.3	chr22	50927825:50927875:50927960:50928059:50928176:50928405,	50927961	50928059	50927998	50927998	Nonsense_Mutation	G	A	p.W225*
SKCM	TCGA-FR-A726-01	MIOX	ENST00000451761.1,ENST00000216075.6	chr22	50927825:50927875:50927960:50928073:50928176:50928405,	50927961	50928073	50927998	50927998	Nonsense_Mutation	G	A	p.W225*
SKCM	TCGA-FR-A726-01	OVGP1	ENST00000369732.3	chr1	111962231:111962348:111963897:111964083:111964186:111964295,	111963898	111964083	111964063	111964063	Nonsense_Mutation	C	T	p.W246*
SKCM	TCGA-FR-A726-01	OVGP1	ENST00000481495.1	chr1	111962231:111962348:111963897:111964295:111965548:111965673,	111963898	111964295	111964063	111964063	Nonsense_Mutation	C	T	p.W246*
SKCM	TCGA-FR-A726-01	DCLK2	ENST00000411937.2,ENST00000506325.1,ENST00000302176.8,ENST00000296550.7	chr4	151168754:151168851:151169456:151169537:151170719:151170762,	151169457	151169537	151169478	151169478	Nonsense_Mutation	C	T	p.Q633*
SKCM	TCGA-FR-A726-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3674867:3675179:3675309:3675570:3677232:3677535,	3675310	3675570	3675535	3675535	Nonsense_Mutation	G	A	p.Q907*
SKCM	TCGA-FR-A726-01	TP63	ENST00000418709.2,ENST00000320472.5,ENST00000440651.2,ENST00000392460.3,ENST00000264731.3	chr3	189507589:189507631:189526060:189526315:189582020:189582057,189456430:189456563:189526060:189526315:189582020:189582057,	189526061	189526315	189526100	189526100	Nonsense_Mutation	C	T	p.Q122*
SKCM	TCGA-FR-A726-01	TMEM108	ENST00000393130.3,ENST00000511388.1,ENST00000321871.6	chr3	133098595:133100005:133109023:133109178:133114707:133115036,	133109024	133109178	133109096	133109096	Nonsense_Mutation	G	A	p.W508*
SKCM	TCGA-FR-A726-01	TDRD1	ENST00000422662.1,ENST00000369280.1,ENST00000369282.1,ENST00000251864.2	chr10	115977303:115977414:115978172:115978343:115980326:115980602,	115978173	115978343	115978283	115978283	Nonsense_Mutation	C	T	p.R812*
SKCM	TCGA-FR-A726-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39517855:39517933:39524346:39524500:39530968:39531075,	39524347	39524500	39524352	39524352	Nonsense_Mutation	G	A	p.R350*
SKCM	TCGA-FR-A726-01	OAS3	ENST00000228928.7	chr12	113385750:113385904:113386665:113387010:113388497:113388780,	113386666	113387010	113386708	113386708	Nonsense_Mutation	C	T	p.Q358*
SKCM	TCGA-FR-A726-01	DNAJC18	ENST00000515277.1,ENST00000302060.5,ENST00000507405.1,ENST00000515581.1	chr5	138761900:138762046:138764226:138764372:138773060:138773247,	138764227	138764372	138764329	138764329	Nonsense_Mutation	G	A	p.R91*
SKCM	TCGA-FR-A726-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000466241.1,ENST00000443124.1,ENST00000263713.5	chr2	120776723:120776840:120799581:120799686:120830753:120830796,	120799582	120799686	120799612	120799612	Nonsense_Mutation	C	T	p.Q71*
SKCM	TCGA-FR-A726-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82817129	82817129	Nonsense_Mutation	C	T	p.Q1002*
SKCM	TCGA-FR-A726-01	COL1A2	ENST00000473573.1,ENST00000297268.6	chr7	94045798:94045815:94047035:94047143:94047810:94047864,	94047036	94047143	94047141	94047141	Nonsense_Mutation	A	T	p.K657*
SKCM	TCGA-FR-A726-01	TIAM2	ENST00000461783.3,ENST00000318981.5,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1	chr6	155448623:155448734:155450351:155451551:155458310:155458746,	155450352	155451551	155450835	155450835	Nonsense_Mutation	C	T	p.R160*
SKCM	TCGA-FR-A726-01	NUDCD3	ENST00000464812.1,ENST00000355451.7	chr7	44444111:44444182:44467169:44467302:44524566:44524873,	44467170	44467302	44467253	44467253	Nonsense_Mutation	G	A	p.R187*
SKCM	TCGA-FR-A726-01	FGD2	ENST00000274963.8,ENST00000464083.1	chr6	36978748:36978826:36979481:36979630:36981384:36981541,	36979482	36979630	36979590	36979590	Nonsense_Mutation	C	T	p.Q163*
SKCM	TCGA-FR-A726-01	ZSWIM5	ENST00000359600.5	chr1	45508890:45509067:45516745:45516925:45524280:45524431,	45516746	45516925	45516916	45516916	Nonsense_Mutation	C	T	p.W421*
SKCM	TCGA-FR-A726-01	TEX10	ENST00000374902.4	chr9	103108975:103109688:103111465:103111654:103115053:103115165,	103111466	103111654	103111612	103111612	Nonsense_Mutation	G	A	p.Q12*
SKCM	TCGA-FR-A726-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36899415	36899415	Nonsense_Mutation	G	A	p.Q556*
SKCM	TCGA-FR-A726-01	EPHA10	ENST00000373048.4,ENST00000540011.1,ENST00000427468.2,ENST00000330210.7,ENST00000446149.2,ENST00000437645.1,ENST00000534097.1	chr1	38185179:38185279:38185580:38185730:38186022:38186226,	38185581	38185730	38185688	38185688	Nonsense_Mutation	G	A	p.Q819*
SKCM	TCGA-FR-A726-01	ACSM2B	ENST00000565232.1,ENST00000569327.1,ENST00000329697.6,ENST00000569364.1,ENST00000414188.2,ENST00000567001.1	chr16	20566764:20566798:20570558:20570769:20575990:20576175,	20570559	20570769	20570704	20570704	Nonsense_Mutation	C	T	p.W81*
SKCM	TCGA-FR-A726-01	SNX29	ENST00000306030.3,ENST00000566228.1	chr16	12571575:12571716:12618558:12618698:12662362:12668145,	12618559	12618698	12618679	12618679	Nonsense_Mutation	C	T	p.Q767*
SKCM	TCGA-FR-A726-01	SRGAP1	ENST00000357825.3,ENST00000537556.1,ENST00000355086.3,ENST00000543397.1	chr12	64377726:64377922:64383689:64383852:64410729:64410792,	64383690	64383852	64383850	64383850	Nonsense_Mutation	A	T	p.K142*
SKCM	TCGA-FR-A726-01	ZSCAN18	ENST00000600897.1	chr19	58600054:58600204:58601231:58601753:58609540:58609598,58600054:58600204:58601231:58601753:58609481:58609570,58600054:58600204:58601231:58601753:58604594:58604765,	58601232	58601753	58601746	58601746	Nonsense_Mutation	C	T	p.W19*
SKCM	TCGA-FR-A726-01	SLC35B2	ENST00000393812.3	chr6	44223305:44223381:44224421:44224615:44225136:44225265,44224078:44224233:44224421:44224615:44225136:44225265,	44224422	44224615	44224515	44224515	Nonsense_Mutation	G	A	p.R38*
SKCM	TCGA-FR-A726-01	ALS2CL	ENST00000434140.1	chr3	46721919:46722031:46722735:46722897:46722989:46723063,46721919:46722031:46722735:46722897:46722993:46723088,	46722736	46722897	46722784	46722784	Nonsense_Mutation	C	T	p.W463*
SKCM	TCGA-FR-A726-01	ACSM2A	ENST00000575558.1,ENST00000417235.2	chr16	20471428:20471613:20476838:20477049:20480833:20480867,20462932:20463003:20476838:20477049:20480833:20480867,	20476839	20477049	20477043	20477043	Nonsense_Mutation	C	T	p.R128*
SKCM	TCGA-FR-A726-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4,ENST00000586588.1	chr19	10250351:10250493:10250721:10251004:10251456:10251585,	10250722	10251004	10250843	10250843	Nonsense_Mutation	G	A	p.Q1213*
SKCM	TCGA-FR-A726-01	HCLS1	ENST00000464274.1,ENST00000314583.3	chr3	121355992:121356103:121361773:121361828:121363664:121363775,	121361774	121361828	121361780	121361780	Nonsense_Mutation	G	A	p.Q150*
SKCM	TCGA-FR-A726-01	PHLDB3	ENST00000595498.1,ENST00000292140.5	chr19	43990931:43991022:43991175:43991275:43998853:43998902,	43991176	43991275	43991260	43991260	Nonsense_Mutation	G	A	p.Q389*
SKCM	TCGA-FR-A726-01	MRPL33	ENST00000296102.3,ENST00000476552.1	chr2	27995540:27995559:27997290:27997397:28002299:28002406,	27997291	27997397	27997355	27997355	Nonsense_Mutation	C	T	p.R36*
SKCM	TCGA-FR-A726-01	WDR66	ENST00000397454.2,ENST00000288912.4	chr12	122396848:122397000:122398490:122398664:122399883:122400068,	122398491	122398664	122398590	122398590	Nonsense_Mutation	C	T	p.R745*
SKCM	TCGA-FR-A726-01	FXR2	ENST00000250113.7,ENST00000573957.1	chr17	7497996:7498075:7499141:7499312:7504726:7504754,	7499142	7499312	7499219	7499219	Nonsense_Mutation	G	A	p.Q252*
SKCM	TCGA-FR-A726-01	NDUFV3	ENST00000460259.1,ENST00000354250.2	chr21	44317048:44317157:44323291:44324386:44328973:44329215,	44323292	44324386	44323879	44323879	Nonsense_Mutation	C	T	p.Q253*
SKCM	TCGA-FR-A726-01	SLC39A12	ENST00000377374.4,ENST00000377371.3,ENST00000539911.1,ENST00000377369.2	chr10	18254411:18254619:18266830:18267003:18270240:18270412,	18266831	18267003	18266997	18266997	Nonsense_Mutation	G	A	p.W306*
SKCM	TCGA-FR-A726-01	LRP2	ENST00000263816.3	chr2	170044479:170044775:170048341:170048543:170050270:170050402,	170048342	170048543	170048418	170048418	Nonsense_Mutation	G	A	p.Q2986*
SKCM	TCGA-FR-A726-01	PSG8	ENST00000404209.4,ENST00000306511.4	chr19	43259139:43259418:43262153:43262432:43268067:43268433,	43262154	43262432	43262320	43262320	Nonsense_Mutation	C	T	p.W181*
SKCM	TCGA-FR-A726-01	OAS2	ENST00000392583.2	chr12	113416406:113416590:113424842:113425113:113433100:113433279,	113424843	113425113	113425071	113425071	Nonsense_Mutation	C	T	p.Q136*
SKCM	TCGA-FR-A726-01	PALLD	ENST00000512127.1	chr4	169552767:169553051:169589340:169589519:169602482:169602549,	169589341	169589519	169589344	169589344	Nonsense_Mutation	G	A	p.W304*
SKCM	TCGA-FR-A726-01	LUZP2	ENST00000336930.6,ENST00000533227.1	chr11	24759766:24759848:24784791:24784854:24927536:24927599,	24784792	24784854	24784837	24784837	Nonsense_Mutation	C	T	p.R41*
SKCM	TCGA-FR-A726-01	MIPOL1	ENST00000539062.2,ENST00000327441.7,ENST00000536774.1,ENST00000396294.2,ENST00000537471.1	chr14	37892059:37892154:37969112:37969343:38016109:38016337,	37969113	37969343	37969297	37969297	Nonsense_Mutation	C	T	p.Q406*
SKCM	TCGA-FR-A726-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654691	29654691	Nonsense_Mutation	C	T	p.Q1815*
SKCM	TCGA-FR-A726-01	SNAP91	ENST00000439399.2,ENST00000523484.2,ENST00000519779.1,ENST00000437520.1,ENST00000369690.2,ENST00000518309.2,ENST00000520213.1,ENST00000369694.2,ENST00000428679.2,ENST00000521485.1,ENST00000521931.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1,ENST00000522248.1	chr6	84372065:84372141:84375157:84375300:84417516:84417646,	84375158	84375300	84375216	84375216	Nonsense_Mutation	C	T	p.W72*
SKCM	TCGA-FR-A726-01	LGALS4	ENST00000595278.1,ENST00000597153.1,ENST00000307751.4	chr19	39297100:39297235:39299383:39299588:39303070:39303095,	39299384	39299588	39299510	39299510	Nonsense_Mutation	C	T	p.W71*
SKCM	TCGA-FR-A726-01	CA1	ENST00000517590.1,ENST00000517618.1,ENST00000523858.1,ENST00000521846.1,ENST00000523022.1,ENST00000523953.1,ENST00000542576.1,ENST00000522814.1,ENST00000522579.1,ENST00000256119.5,ENST00000431316.1,ENST00000432364.2,ENST00000522662.1	chr8	86249230:86249292:86250480:86250678:86253827:86253888,	86250481	86250678	86250487	86250487	Nonsense_Mutation	G	A	p.R77*
SKCM	TCGA-FR-A726-01	UGT2A3	ENST00000251566.4	chr4	69796872:69796960:69798345:69798477:69811023:69811168,	69798346	69798477	69798408	69798408	Nonsense_Mutation	G	A	p.Q312*
SKCM	TCGA-FR-A726-01	BTNL9	ENST00000327705.9,ENST00000376842.3,ENST00000376841.2,ENST00000491209.1	chr5	180467271:180467432:180474926:180475271:180477087:180477369,180472466:180472598:180474926:180475271:180477087:180477369,	180474927	180475271	180475255	180475255	Nonsense_Mutation	G	A	p.W146*
SKCM	TCGA-FR-A726-01	ALS2CL	ENST00000434140.1	chr3	46721919:46722031:46722735:46722897:46722989:46723063,46721919:46722031:46722735:46722897:46722993:46723088,	46722736	46722897	46722783	46722783	Nonsense_Mutation	C	T	p.W463*
SKCM	TCGA-FR-A726-01	CLTCL1	ENST00000263200.10,ENST00000413132.2,ENST00000353891.5	chr22	19187244:19187352:19188839:19189004:19195663:19195821,	19188840	19189004	19188847	19188847	Nonsense_Mutation	C	T	p.W1253*
SKCM	TCGA-FR-A726-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436061	72436061	Nonsense_Mutation	G	A	p.W94*
SKCM	TCGA-FR-A726-01	GPRC5C	ENST00000481232.1	chr17	72428254:72428280:72435883:72436185:72439956:72440051,	72435884	72436185	72436061	72436061	Nonsense_Mutation	G	A	p.W94*
SKCM	TCGA-FR-A726-01	SEC23A	ENST00000307712.6,ENST00000556092.1,ENST00000548032.2,ENST00000545328.2	chr14	39562390:39562448:39565101:39565343:39572235:39572279,	39565102	39565343	39565260	39565260	Nonsense_Mutation	C	T	p.W21*
SKCM	TCGA-FR-A726-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269780	1269780	Nonsense_Mutation	G	A	p.W3893*
SKCM	TCGA-FR-A726-01	TNFRSF11A	ENST00000269485.7,ENST00000586569.1	chr18	60017044:60017170:60021623:60021767:60025480:60025574,	60021624	60021767	60021700	60021700	Nonsense_Mutation	G	A	p.W120*
SKCM	TCGA-FR-A726-01	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645140	46645140	Nonsense_Mutation	G	A	p.Q574*
SKCM	TCGA-FR-A726-01	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819167	20819167	Nonsense_Mutation	G	A	p.R364*
SKCM	TCGA-FR-A726-01	KIAA1549	ENST00000440172.1,ENST00000422774.1,ENST00000242365.4	chr7	138583700:138583878:138588333:138588482:138589767:138589827,	138588334	138588482	138588373	138588373	Nonsense_Mutation	C	T	p.W1210*
SKCM	TCGA-FR-A726-01	TRPM4	ENST00000598502.1,ENST00000427978.2,ENST00000595519.1,ENST00000252826.5	chr19	49675265:49675365:49684605:49684718:49685834:49686012,	49684606	49684718	49684710	49684710	Nonsense_Mutation	C	T	p.Q419*
SKCM	TCGA-FR-A726-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195517442	195517442	Nonsense_Mutation	G	A	p.Q337*
SKCM	TCGA-FR-A726-01	PDK1	ENST00000543905.1,ENST00000439519.1,ENST00000282077.3,ENST00000410055.1,ENST00000443353.1	chr2	173427468:173427528:173429230:173429415:173429705:173429801,173426947:173427019:173429230:173429415:173429705:173429801,	173429231	173429415	173429367	173429367	Nonsense_Mutation	C	T	p.R183*
SKCM	TCGA-FR-A726-01	TPP1	ENST00000533371.1,ENST00000524924.1,ENST00000299427.6	chr11	6636492:6636560:6636672:6636793:6637235:6637305,	6636673	6636793	6636759	6636759	Nonsense_Mutation	G	A	p.Q151*
SKCM	TCGA-FR-A726-01	DHX57	ENST00000452978.1	chr2	39025493:39025584:39029856:39030057:39033700:39033835,39025493:39025584:39029856:39030057:39040962:39041037,	39029857	39030057	39029922	39029922	Nonsense_Mutation	G	A	p.Q1318*
SKCM	TCGA-FR-A726-01	AGAP3	ENST00000397238.2	chr7	150831568:150831655:150835229:150835400:150837065:150837203,	150835230	150835400	150835294	150835294	Nonsense_Mutation	G	A	p.W520*
SKCM	TCGA-FR-A726-01	LRRC2	ENST00000395905.3,ENST00000296144.3	chr3	46580534:46580691:46586535:46586743:46592956:46593100,	46586536	46586743	46586728	46586728	Nonsense_Mutation	C	T	p.W47*
SKCM	TCGA-FR-A726-01	NOL6	ENST00000297990.4,ENST00000455041.2,ENST00000379471.2,ENST00000353159.2	chr9	33467391:33467514:33467688:33467866:33468027:33468143,	33467689	33467866	33467706	33467706	Nonsense_Mutation	G	A	p.R529*
SKCM	TCGA-FR-A726-01	PDLIM1	ENST00000477757.1,ENST00000329399.6	chr10	97006971:97007123:97023620:97023820:97028534:97028619,	97023621	97023820	97023727	97023727	Nonsense_Mutation	G	A	p.Q143*
SKCM	TCGA-FR-A726-01	ITGA6	ENST00000375221.2,ENST00000409532.1,ENST00000442250.1,ENST00000264107.7,ENST00000264106.6,ENST00000458358.1,ENST00000343713.4,ENST00000409080.1	chr2	173344368:173344467:173344717:173344779:173349509:173349670,	173344718	173344779	173344722	173344722	Nonsense_Mutation	C	T	p.Q537*
SKCM	TCGA-FR-A726-01	FOXK2	ENST00000473637.2,ENST00000531030.1,ENST00000526383.2,ENST00000335255.5	chr17	80525929:80526077:80529599:80529746:80540616:80540790,	80529600	80529746	80529642	80529642	Nonsense_Mutation	C	T	p.Q269*
SKCM	TCGA-FR-A726-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000414883.1,ENST00000282641.2,ENST00000395495.1	chr10	52601621:52601752:52603747:52603882:52619601:52619745,	52603748	52603882	52603789	52603789	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-FR-A726-01	RNF31	ENST00000324103.6,ENST00000382687.3,ENST00000560787.1,ENST00000559275.1	chr14	24618685:24618792:24619269:24619657:24619806:24620097,	24619270	24619657	24619625	24619625	Nonsense_Mutation	C	T	p.R389*
SKCM	TCGA-FR-A726-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1262847	1262847	Nonsense_Mutation	G	A	p.W1582*
SKCM	TCGA-XV-A9VZ-01	UBXN1	ENST00000528907.1,ENST00000294119.2,ENST00000533476.1,ENST00000532904.1,ENST00000526919.1,ENST00000436354.2,ENST00000533908.1,ENST00000534176.1,ENST00000529640.1,ENST00000527421.1,ENST00000524762.1,ENST00000301935.5,ENST00000525717.1	chr11	62445810:62445880:62445966:62446073:62446161:62446215,	62445967	62446073	62446066	62446066	Nonsense_Mutation	C	A	p.E41*
SKCM	TCGA-EE-A2MS-06	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55563816:55563954:55566599:55566784:55570783:55570928,	55566600	55566784	55566617	55566617	Nonsense_Mutation	G	A	p.Q501*
SKCM	TCGA-EE-A2MS-06	AK9	ENST00000285397.5,ENST00000424296.2,ENST00000368948.2,ENST00000341338.6	chr6	109954446:109954526:109962720:109962819:109965816:109965891,	109962721	109962819	109962759	109962759	Nonsense_Mutation	G	A	p.Q299*
SKCM	TCGA-EE-A2MS-06	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320217	46320217	Nonsense_Mutation	A	C	p.Y774*
SKCM	TCGA-EE-A2MS-06	ADPRH	ENST00000478927.1	chr3	119298522:119298698:119300980:119301314:119305131:119305210,	119300981	119301314	119301087	119301087	Nonsense_Mutation	G	A	p.W24*
SKCM	TCGA-EE-A2MS-06	SULT1B1	ENST00000310613.3	chr4	70596218:70596399:70599130:70599225:70599855:70599982,	70599131	70599225	70599185	70599185	Nonsense_Mutation	C	T	p.W181*
SKCM	TCGA-EE-A2MS-06	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2,ENST00000277165.6	chr9	96259752:96259881:96261071:96261168:96277948:96278049,	96261072	96261168	96261096	96261096	Nonsense_Mutation	C	T	p.R320*
SKCM	TCGA-EE-A2MS-06	NRCAM	ENST00000379028.3,ENST00000425651.2,ENST00000379022.4	chr7	107800805:107800937:107807365:107807518:107808721:107808847,	107807366	107807518	107807505	107807505	Nonsense_Mutation	C	T	p.W1109*
SKCM	TCGA-EE-A2MS-06	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196684722:196684899:196694250:196694427:196695599:196695782,	196694251	196694427	196694310	196694310	Nonsense_Mutation	C	T	p.Q586*
SKCM	TCGA-EE-A2MS-06	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577603	57577603	Nonsense_Mutation	C	T	p.R814*
SKCM	TCGA-EE-A2MS-06	TCAIM	ENST00000342649.4,ENST00000417237.1	chr3	44402856:44403010:44408947:44409200:44434346:44434469,	44408948	44409200	44408953	44408953	Nonsense_Mutation	C	T	p.R109*
SKCM	TCGA-EE-A2MS-06	ENTPD1	ENST00000371207.3,ENST00000543964.1,ENST00000453258.2,ENST00000371205.4,ENST00000539125.1,ENST00000371203.5,ENST00000483213.1	chr10	97604331:97604392:97605113:97605353:97607202:97607256,	97605114	97605353	97605216	97605216	Nonsense_Mutation	C	T	p.Q88*
SKCM	TCGA-EE-A2MS-06	CD22	ENST00000544992.2	chr19	35835735:35835828:35835953:35836029:35837053:35837138,	35835954	35836029	35835957	35835957	Nonsense_Mutation	G	A	p.W712*
SKCM	TCGA-EE-A2MS-06	GPR153	ENST00000377893.2	chr1	6311397:6311590:6313777:6314207:6314609:6315074,	6313778	6314207	6314159	6314159	Nonsense_Mutation	C	T	p.W135*
SKCM	TCGA-EE-A2MS-06	PSD4	ENST00000409656.1,ENST00000245796.6	chr2	113955140:113955211:113955323:113955490:113956316:113956407,	113955324	113955490	113955447	113955447	Nonsense_Mutation	C	T	p.Q861*
SKCM	TCGA-EE-A2MS-06	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000465592.1	chr2	113955140:113955211:113955326:113955490:113956316:113956407,	113955327	113955490	113955447	113955447	Nonsense_Mutation	C	T	p.Q861*
SKCM	TCGA-EE-A2MS-06	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645263	46645263	Nonsense_Mutation	G	A	p.R533*
SKCM	TCGA-EE-A2MS-06	CMIP	ENST00000537098.3,ENST00000539778.2,ENST00000398040.4,ENST00000566513.1	chr16	81711879:81712233:81725379:81725445:81726762:81726789,	81725380	81725445	81725423	81725423	Nonsense_Mutation	C	T	p.Q478*
SKCM	TCGA-EE-A2MS-06	PLXDC1	ENST00000315392.4,ENST00000539608.1,ENST00000579190.1,ENST00000461225.1,ENST00000578390.1,ENST00000578517.1,ENST00000394318.3,ENST00000394316.2,ENST00000415163.1,ENST00000580667.1,ENST00000441877.1	chr17	37265156:37265226:37265500:37265644:37295906:37296085,	37265501	37265644	37265577	37265577	Nonsense_Mutation	C	T	p.W108*
SKCM	TCGA-EE-A2MS-06	DCLK3	ENST00000416516.2	chr3	36753912:36757012:36759500:36759668:36763017:36763150,	36759501	36759668	36759552	36759552	Nonsense_Mutation	G	A	p.Q568*
SKCM	TCGA-EE-A2MS-06	NDUFS8	ENST00000453471.2,ENST00000432321.2,ENST00000525628.1,ENST00000531228.1,ENST00000313468.5,ENST00000526339.1	chr11	67799752:67799803:67800389:67800479:67800577:67800690,	67800390	67800479	67800476	67800476	Nonsense_Mutation	C	T	p.R66*
SKCM	TCGA-EE-A2MS-06	IL32	ENST00000549213.1,ENST00000551122.1,ENST00000396887.3,ENST00000528652.2	chr16	3118180:3118240:3118990:3119110:3119281:3119413,	3118991	3119110	3119012	3119012	Nonsense_Mutation	A	T	p.K75*
SKCM	TCGA-EE-A2MS-06	ELF5	ENST00000312319.2,ENST00000257832.2,ENST00000429939.2	chr11	34501819:34501861:34502318:34502514:34503977:34504046,	34502319	34502514	34502436	34502436	Nonsense_Mutation	C	T	p.W195*
SKCM	TCGA-EE-A2MS-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099639	168099639	Nonsense_Mutation	G	A	p.W579*
SKCM	TCGA-EE-A2MS-06	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844552	27844552	Nonsense_Mutation	C	T	p.Q596*
SKCM	TCGA-EE-A2MS-06	TERF2	ENST00000603068.1,ENST00000569584.2,ENST00000254942.3,ENST00000566750.1	chr16	69402278:69402385:69404385:69404532:69406171:69406185,	69404386	69404532	69404472	69404472	Nonsense_Mutation	G	A	p.Q252*
SKCM	TCGA-EE-A2MS-06	TOP3A	ENST00000321105.5,ENST00000542570.1,ENST00000583804.2,ENST00000584582.1,ENST00000580095.1,ENST00000582981.1	chr17	18194155:18194341:18195958:18196166:18198016:18198099,	18195959	18196166	18196150	18196150	Nonsense_Mutation	G	A	p.R364*
SKCM	TCGA-EE-A2MS-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57*
SKCM	TCGA-EE-A2MS-06	VSTM2L	ENST00000448944.1	chr20	36531543:36531873:36560036:36560206:36572382:36572538,	36560037	36560206	36560175	36560175	Nonsense_Mutation	G	A	p.W87*
SKCM	TCGA-EE-A2MS-06	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66466876:66467079:66467996:66468753:66469054:66469192,	66467997	66468753	66468095	66468095	Nonsense_Mutation	G	A	p.R1159*
SKCM	TCGA-EE-A2MS-06	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408083	130408083	Nonsense_Mutation	C	T	p.W1274*
SKCM	TCGA-EE-A2MS-06	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394864	86394864	Nonsense_Mutation	C	T	p.Q135*
SKCM	TCGA-EE-A2MS-06	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153905958:153906347:153906610:153906778:153907235:153907403,	153906611	153906778	153906740	153906740	Nonsense_Mutation	G	A	p.Q938*
SKCM	TCGA-EE-A2MS-06	ZNF208	ENST00000599916.1	chr19	22115759:22116039:22157530:22157609:22170017:22170113,	22157531	22157609	22157589	22157589	Nonsense_Mutation	G	A	p.Q83*
SKCM	TCGA-EE-A2MS-06	WRAP53	ENST00000498311.1,ENST00000467699.1	chr17	7592907:7593019:7604058:7604147:7604744:7604867,	7604059	7604147	7604071	7604071	Nonsense_Mutation	C	T	p.R219*
SKCM	TCGA-EE-A2MS-06	UNG	ENST00000539287.1,ENST00000336865.2,ENST00000242576.2	chr12	109536236:109536443:109536993:109537089:109539706:109539804,	109536994	109537089	109537051	109537051	Nonsense_Mutation	C	T	p.Q124*
SKCM	TCGA-W3-AA21-06	OSMR	ENST00000274276.3	chr5	38921719:38921896:38923251:38923356:38924523:38924697,	38923252	38923356	38923272	38923272	Nonsense_Mutation	C	T	p.R596*
SKCM	TCGA-W3-AA21-06	AP1G1	ENST00000423132.2,ENST00000565009.1,ENST00000450149.2,ENST00000393512.3	chr16	71808439:71808495:71823181:71823385:71841917:71842053,71808439:71808495:71823181:71823385:71842665:71842716,	71823182	71823385	71823325	71823325	Nonsense_Mutation	G	A	p.Q20*
SKCM	TCGA-W3-AA21-06	TRPV5	ENST00000439304.1,ENST00000442623.1	chr7	142627152:142627275:142627443:142627541:142630428:142630538,	142627444	142627541	142627519	142627519	Nonsense_Mutation	G	A	p.R51*
SKCM	TCGA-W3-AA21-06	PRSS16	ENST00000468930.1	chr6	27216714:27216725:27216878:27217008:27220586:27220728,27215673:27215827:27216878:27217008:27220586:27220728,	27216879	27217008	27216980	27216980	Nonsense_Mutation	C	T	p.Q147*
SKCM	TCGA-W3-AA21-06	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000510871.1,ENST00000514014.1	chr4	40427428:40428160:40434667:40434879:40439787:40440814,40427428:40428160:40434667:40434879:40438457:40438661,	40434668	40434879	40434670	40434670	Nonsense_Mutation	G	A	p.Q445*
SKCM	TCGA-W3-AA21-06	SLC12A3	ENST00000563236.1,ENST00000262502.5,ENST00000566786.1,ENST00000438926.2	chr16	56916377:56916409:56917960:56918116:56919176:56919276,	56917961	56918116	56917965	56917965	Nonsense_Mutation	G	A	p.W558*
SKCM	TCGA-ER-A3ET-06	CSMD1	ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2823296:2823476:2824091:2824268:2830638:2830821,	2824092	2824268	2824193	2824193	Nonsense_Mutation	G	T	p.S3001*
SKCM	TCGA-ER-A3ET-06	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98556966:98557113:98558883:98559097:98559924:98560050,	98558884	98559097	98558887	98558887	Nonsense_Mutation	C	T	p.Q2158*
SKCM	TCGA-ER-A3ET-06	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76920133:76920267:76931720:76931793:76937011:76937093,	76931721	76931793	76931728	76931728	Nonsense_Mutation	C	A	p.E1268*
SKCM	TCGA-FS-A1ZP-06	GLIS3	ENST00000491889.1	chr9	4125733:4125941:4286037:4286523:4299420:4299594,4125819:4125941:4286037:4286523:4298383:4298496,4118744:4118881:4286037:4286523:4299420:4299594,	4286038	4286523	4286122	4286122	Nonsense_Mutation	G	A	p.Q102*
SKCM	TCGA-FS-A1ZP-06	ZBTB11	ENST00000312938.4	chr3	101374947:101375092:101378626:101378872:101383381:101383558,	101378627	101378872	101378854	101378854	Nonsense_Mutation	G	A	p.Q607*
SKCM	TCGA-FS-A1ZP-06	TRIM27	ENST00000377199.3,ENST00000377194.3	chr6	28875012:28875039:28876584:28876617:28876749:28876766,	28876585	28876617	28876588	28876588	Nonsense_Mutation	G	A	p.Q306*
SKCM	TCGA-FS-A1ZP-06	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740049	35740049	Nonsense_Mutation	G	A	p.W1026*
SKCM	TCGA-FS-A1ZP-06	GPRC5A	ENST00000014914.5	chr12	13062002:13062105:13065017:13065076:13065380:13066067,	13065018	13065076	13065068	13065068	Nonsense_Mutation	C	T	p.Q325*
SKCM	TCGA-FS-A1ZP-06	FASN	ENST00000306749.2	chr17	80040789:80040991:80041077:80041301:80041392:80041515,	80041078	80041301	80041110	80041110	Nonsense_Mutation	G	A	p.Q1845*
SKCM	TCGA-FS-A1ZP-06	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740050	35740050	Nonsense_Mutation	G	A	p.W1026*
SKCM	TCGA-FS-A4F2-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
SKCM	TCGA-FS-A4F2-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830330	61830330	Nonsense_Mutation	G	A	p.Q3437*
SKCM	TCGA-FS-A4F2-06	MYO5B	ENST00000285039.7	chr18	47431041:47431198:47432788:47433000:47438431:47438543,	47432789	47433000	47432958	47432958	Nonsense_Mutation	G	A	p.R749*
SKCM	TCGA-FS-A4F2-06	LAMA3	ENST00000399516.3,ENST00000313654.9,ENST00000269217.6,ENST00000587184.1,ENST00000588770.1	chr18	21519186:21519350:21523751:21523935:21526107:21526248,	21523752	21523935	21523928	21523928	Nonsense_Mutation	G	A	p.W3068*
SKCM	TCGA-FS-A4F2-06	FAM129C	ENST00000600519.1	chr19	17656554:17657606:17660263:17660336:17662594:17662769,	17660264	17660336	17660320	17660320	Nonsense_Mutation	G	A	p.W609*
SKCM	TCGA-FS-A4F2-06	FAM129C	ENST00000601861.1,ENST00000335393.4,ENST00000449408.2	chr19	17657494:17657606:17660252:17660336:17662594:17662769,17657494:17657606:17660252:17660336:17664121:17664443,	17660253	17660336	17660320	17660320	Nonsense_Mutation	G	A	p.W609*
SKCM	TCGA-FS-A4F0-06	NUDT2	ENST00000346365.4,ENST00000379155.5,ENST00000379158.2	chr9	34338710:34338845:34339021:34339164:34343121:34343709,	34339022	34339164	34339151	34339151	Nonsense_Mutation	G	A	p.W38*
SKCM	TCGA-FS-A4F0-06	TTC3	ENST00000438055.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38524192:38524329:38525250:38525577:38528956:38529208,	38525251	38525577	38525559	38525559	Nonsense_Mutation	C	T	p.Q908*
SKCM	TCGA-FS-A4F0-06	NQO2	ENST00000338130.2,ENST00000380455.4,ENST00000380430.1	chr6	3012797:3012908:3015763:3015877:3017117:3017219,	3015764	3015877	3015827	3015827	Nonsense_Mutation	C	T	p.Q123*
SKCM	TCGA-FS-A4F0-06	PEX14	ENST00000356607.4,ENST00000538836.1	chr1	10683075:10683178:10684396:10684494:10687328:10687420,	10684397	10684494	10684462	10684462	Nonsense_Mutation	C	T	p.Q185*
SKCM	TCGA-FS-A4F0-06	TARBP1	ENST00000040877.1	chr1	234563321:234563512:234564881:234565070:234565161:234565423,	234564882	234565070	234564992	234564992	Nonsense_Mutation	G	A	p.Q984*
SKCM	TCGA-FS-A4F0-06	WDR72	ENST00000360509.5	chr15	54014998:54015105:54025193:54025358:54051829:54051859,	54025194	54025358	54025314	54025314	Nonsense_Mutation	C	T	p.W11*
SKCM	TCGA-D9-A3Z1-06	ME1	ENST00000541327.1,ENST00000369705.3,ENST00000543031.1	chr6	83963347:83963457:84025028:84025132:84055891:84056053,	84025029	84025132	84025070	84025070	Nonsense_Mutation	A	C	p.Y221*
SKCM	TCGA-D9-A3Z1-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-D9-A3Z1-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-D9-A3Z1-06	PSG8	ENST00000600709.1	chr19	43256878:43257528:43258484:43258739:43262153:43262432,	43258485	43258739	43258631	43258631	Nonsense_Mutation	C	T	p.W366*
SKCM	TCGA-D9-A3Z1-06	TNFRSF11B	ENST00000521597.1,ENST00000297350.4	chr8	119936713:119937001:119938732:119938957:119940976:119941168,	119938733	119938957	119938736	119938736	Nonsense_Mutation	G	A	p.Q272*
SKCM	TCGA-D9-A3Z1-06	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332856	175332856	Nonsense_Mutation	G	A	p.R899*
SKCM	TCGA-D9-A3Z1-06	CRELD1	ENST00000383811.3,ENST00000397170.3,ENST00000452070.1,ENST00000326434.5	chr3	9979245:9979356:9979698:9979790:9982533:9982700,	9979699	9979790	9979724	9979724	Nonsense_Mutation	C	T	p.Q132*
SKCM	TCGA-EB-A85I-01	GCSAML	ENST00000529512.1,ENST00000527084.1	chr1	247712448:247712522:247719708:247719768:247726891:247726941,247690241:247690356:247719708:247719768:247726891:247726941,	247719709	247719768	247719725	247719725	Nonsense_Mutation	C	T	p.Q16*
SKCM	TCGA-EB-A85I-01	NFYC	ENST00000372669.4,ENST00000372654.1,ENST00000467203.1,ENST00000308733.5,ENST00000440226.3,ENST00000425457.2,ENST00000456393.2,ENST00000453631.1,ENST00000372652.1,ENST00000372653.1,ENST00000447388.3,ENST00000372651.1,ENST00000525290.1	chr1	41213205:41213277:41215244:41215358:41223792:41223966,41213209:41213277:41215244:41215358:41218822:41218888,	41215245	41215358	41215314	41215314	Nonsense_Mutation	C	T	p.R83*
SKCM	TCGA-EB-A85I-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985776	36985776	Nonsense_Mutation	C	T	p.R832*
SKCM	TCGA-FW-A3TU-06	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83933264	83933264	Nonsense_Mutation	G	A	p.Q247*
SKCM	TCGA-FW-A3TU-06	SCPEP1	ENST00000575423.1,ENST00000262288.3	chr17	55074374:55074416:55075745:55075859:55078215:55078353,	55075746	55075859	55075817	55075817	Nonsense_Mutation	A	T	p.R318*
SKCM	TCGA-FW-A3TU-06	SCPEP1	ENST00000576154.1	chr17	55074374:55074416:55075734:55075859:55078215:55078353,	55075735	55075859	55075817	55075817	Nonsense_Mutation	A	T	p.R318*
SKCM	TCGA-FW-A3TU-06	UGT2A3	ENST00000251566.4	chr4	69796872:69796960:69798345:69798477:69811023:69811168,	69798346	69798477	69798408	69798408	Nonsense_Mutation	G	A	p.Q312*
SKCM	TCGA-FW-A3TU-06	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48936978	48936978	Nonsense_Mutation	C	G	p.S249*
SKCM	TCGA-FW-A3TU-06	MED6	ENST00000430055.2	chr14	71058004:71058098:71059596:71059726:71060012:71060095,	71059597	71059726	71059684	71059684	Nonsense_Mutation	G	A	p.Q127*
SKCM	TCGA-FW-A3TU-06	MED6	ENST00000556044.1,ENST00000256379.5,ENST00000553611.1,ENST00000554963.1	chr14	71058004:71058098:71059596:71059705:71060012:71060095,	71059597	71059705	71059684	71059684	Nonsense_Mutation	G	A	p.Q127*
SKCM	TCGA-FW-A3TU-06	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73679775	73679775	Nonsense_Mutation	C	T	p.Q2040*
SKCM	TCGA-FW-A3TU-06	RPRD2	ENST00000401000.4,ENST00000539519.1,ENST00000492220.1,ENST00000369068.4	chr1	150432535:150432793:150437002:150437203:150443036:150443456,	150437003	150437203	150437134	150437134	Nonsense_Mutation	G	T	p.E489*
SKCM	TCGA-FW-A3TU-06	PDCD10	ENST00000470131.1,ENST00000492396.1,ENST00000497056.2,ENST00000461494.1,ENST00000475915.2,ENST00000392750.2,ENST00000473645.2	chr3	167402126:167402177:167405021:167405104:167405402:167405481,	167405022	167405104	167405098	167405098	Nonsense_Mutation	C	A	p.E161*
SKCM	TCGA-FW-A3TU-06	GRM4	ENST00000374181.4,ENST00000538487.2,ENST00000609973.1	chr6	34029669:34029805:34059659:34059876:34100754:34100798,	34059660	34059876	34059678	34059678	Nonsense_Mutation	G	A	p.Q240*
SKCM	TCGA-FW-A3TU-06	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069261	29069261	Nonsense_Mutation	T	A	p.L160*
SKCM	TCGA-FW-A3TU-06	C2CD3	ENST00000538625.1,ENST00000334126.7	chr11	73744874:73745323:73748522:73748743:73753098:73753205,	73748523	73748743	73748721	73748721	Nonsense_Mutation	G	A	p.Q1895*
SKCM	TCGA-FW-A3TU-06	THRB	ENST00000416420.1,ENST00000280696.5,ENST00000396671.2,ENST00000356447.4	chr3	24184991:24185197:24188165:24188313:24193880:24193981,	24188166	24188313	24188211	24188211	Nonsense_Mutation	C	A	p.E163*
SKCM	TCGA-EB-A97M-01	FAM78B	ENST00000441649.1	chr1	166029137:166029900:166038748:166040000:166135222:166135462,	166038749	166040000	166039691	166039691	Nonsense_Mutation	C	T	p.W191*
SKCM	TCGA-EB-A97M-01	FAM78B	ENST00000456900.1	chr1	166029137:166029900:166039071:166040000:166135222:166135462,	166039072	166040000	166039691	166039691	Nonsense_Mutation	C	T	p.W191*
SKCM	TCGA-EB-A3XC-01	ABCF1	ENST00000475993.1	chr6	30558082:30558155:30558311:30558938:30564345:30564956,	30558312	30558938	30558470	30558470	Nonsense_Mutation	C	T	p.R844*
SKCM	TCGA-EB-A82C-01	PTGER3	ENST00000370932.2	chr1	71419445:71419472:71477987:71478167:71512363:71513281,71439979:71440071:71477987:71478167:71512363:71513281,71318255:71318542:71477987:71478167:71512363:71513281,	71477988	71478167	71478002	71478002	Nonsense_Mutation	G	A	p.R355*
SKCM	TCGA-EB-A82C-01	PTGER3	ENST00000351052.5	chr1	71439979:71440071:71477900:71478167:71512363:71513281,	71477901	71478167	71478002	71478002	Nonsense_Mutation	G	A	p.R355*
SKCM	TCGA-DA-A95W-06	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121758562:121759434:121767663:121767777,121739487:121739560:121758562:121759434:121761046:121761226,	121758563	121759434	121759267	121759267	Nonsense_Mutation	C	T	p.Q326*
SKCM	TCGA-DA-A95W-06	NOL6	ENST00000455041.2	chr9	33467688:33467866:33468027:33468167:33468318:33468420,	33468028	33468167	33468146	33468146	Nonsense_Mutation	G	A	p.Q384*
SKCM	TCGA-DA-A95W-06	GSTZ1	ENST00000555093.1	chr14	77793180:77793248:77793814:77794380:77795465:77795544,	77793815	77794380	77794369	77794369	Nonsense_Mutation	C	T	p.Q56*
SKCM	TCGA-DA-A95W-06	GSTZ1	ENST00000556627.1	chr14	77793814:77793895:77794254:77794380:77795465:77795544,77793180:77793248:77794254:77794380:77795465:77795544,	77794255	77794380	77794369	77794369	Nonsense_Mutation	C	T	p.Q56*
SKCM	TCGA-BF-A5EQ-01	UPF3B	ENST00000345865.2,ENST00000276201.2	chrX	118967988:118968990:118971719:118972014:118972329:118972490,	118971720	118972014	118971734	118971734	Nonsense_Mutation	G	A	p.R430*
SKCM	TCGA-BF-A5EQ-01	LRP8	ENST00000347547.2,ENST00000480045.1,ENST00000306052.6	chr1	53712689:53712728:53715051:53715228:53716361:53716534,	53715052	53715228	53715120	53715120	Nonsense_Mutation	C	A	p.E929*
SKCM	TCGA-BF-A5EQ-01	FAHD2A	ENST00000447036.1,ENST00000233379.4	chr2	96071300:96071551:96072688:96072905:96076274:96076320,	96072689	96072905	96072702	96072702	Nonsense_Mutation	C	T	p.Q87*
SKCM	TCGA-BF-A5EQ-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580516	7580516	Nonsense_Mutation	C	T	p.Q1365*
SKCM	TCGA-BF-A5EQ-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374867.2,ENST00000431894.1,ENST00000265371.4	chr10	33486577:33486637:33491818:33491923:33496499:33496553,	33491819	33491923	33491828	33491828	Nonsense_Mutation	G	A	p.Q619*
SKCM	TCGA-W3-AA1R-06	SCARA3	ENST00000301904.3	chr8	27514298:27514397:27516012:27517056:27528416:27530537,	27516013	27517056	27516105	27516105	Nonsense_Mutation	C	T	p.Q140*
SKCM	TCGA-W3-AA1R-06	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1,ENST00000507966.3	chr5	102515721:102515889:102518934:102519108:102520372:102520445,	102518935	102519108	102519016	102519016	Nonsense_Mutation	C	T	p.R1002*
SKCM	TCGA-W3-AA1R-06	ITGA8	ENST00000378076.3	chr10	15573048:15573150:15590453:15590567:15600072:15600201,	15590454	15590567	15590507	15590507	Nonsense_Mutation	C	A	p.E943*
SKCM	TCGA-W3-AA1R-06	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3,ENST00000359586.6	chr10	124389803:124390006:124390476:124390797:124391370:124391391,	124390477	124390797	124390582	124390582	Nonsense_Mutation	G	A	p.W1915*
SKCM	TCGA-W3-AA1R-06	SENP7	ENST00000348610.3,ENST00000394095.2	chr3	101090851:101090970:101117704:101117899:101177798:101177896,101090851:101090970:101117704:101117899:101136436:101136634,	101117705	101117899	101117716	101117716	Nonsense_Mutation	A	T	p.Y222*
SKCM	TCGA-W3-AA1R-06	KLHL6	ENST00000468734.1,ENST00000341319.3	chr3	183211866:183212069:183217377:183217615:183225846:183226296,	183217378	183217615	183217425	183217425	Nonsense_Mutation	C	T	p.W367*
SKCM	TCGA-W3-AA1R-06	SLC17A4	ENST00000377905.4	chr6	25769212:25769418:25770294:25770528:25770611:25770699,	25770295	25770528	25770311	25770311	Nonsense_Mutation	G	A	p.W105*
SKCM	TCGA-W3-AA1R-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
SKCM	TCGA-W3-AA1R-06	SLC33A1	ENST00000468581.1	chr3	155551256:155551374:155551645:155551830:155560220:155560394,155551256:155551374:155551645:155551830:155571011:155571106,	155551646	155551830	155551683	155551683	Nonsense_Mutation	G	A	p.Q371*
SKCM	TCGA-W3-AA1R-06	CSNK1D	ENST00000314028.6,ENST00000403276.3,ENST00000579316.1,ENST00000392334.2,ENST00000584472.1,ENST00000398519.5	chr17	80213313:80213453:80223561:80223672:80231181:80231245,	80223562	80223672	80223622	80223622	Nonsense_Mutation	T	A	p.K43*
SKCM	TCGA-W3-AA1R-06	PROM1	ENST00000540805.1,ENST00000447510.2,ENST00000539194.1,ENST00000510224.1	chr4	16034926:16035132:16037357:16037384:16040568:16040624,	16037358	16037384	16037360	16037360	Nonsense_Mutation	T	A	p.K101*
SKCM	TCGA-W3-AA1R-06	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30001017	30001017	Nonsense_Mutation	A	T	p.Y1532*
SKCM	TCGA-W3-AA1R-06	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832338	39832338	Nonsense_Mutation	G	A	p.Q407*
SKCM	TCGA-W3-AA1R-06	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832338	39832338	Nonsense_Mutation	G	A	p.Q407*
SKCM	TCGA-W3-AA1R-06	FAM49A	ENST00000406434.1,ENST00000451689.1,ENST00000355549.2,ENST00000381323.3,ENST00000445605.1	chr2	16745291:16745362:16746913:16747035:16769317:16769397,	16746914	16747035	16746919	16746919	Nonsense_Mutation	G	A	p.R63*
SKCM	TCGA-W3-AA1R-06	NRG1	ENST00000405005.3,ENST00000521670.1,ENST00000522402.1	chr8	32585466:32585596:32599525:32599593:32600192:32600251,32585466:32585596:32599525:32599593:32611889:32611941,	32599526	32599593	32599581	32599581	Nonsense_Mutation	C	T	p.Q230*
SKCM	TCGA-W3-AA1R-06	KLHL6	ENST00000468734.1,ENST00000341319.3	chr3	183211866:183212069:183217377:183217615:183225846:183226296,	183217378	183217615	183217424	183217424	Nonsense_Mutation	C	T	p.W367*
SKCM	TCGA-W3-AA1R-06	POF1B	ENST00000373145.3,ENST00000262753.4	chrX	84558411:84558494:84559348:84559477:84560796:84560916,	84559349	84559477	84559417	84559417	Nonsense_Mutation	G	A	p.Q500*
SKCM	TCGA-W3-AA1R-06	RIMS1	ENST00000264839.7	chr6	72970407:72970470:72974677:72974755:72975662:72975752,	72974678	72974755	72974743	72974743	Nonsense_Mutation	G	A	p.W1061*
SKCM	TCGA-W3-AA1R-06	SAG	ENST00000471884.1,ENST00000453143.1,ENST00000409110.1,ENST00000462487.1,ENST00000447536.1	chr2	234227396:234227441:234229275:234229469:234231591:234231615,	234229276	234229469	234229371	234229371	Nonsense_Mutation	C	T	p.Q93*
SKCM	TCGA-W3-AA1R-06	SAG	ENST00000474206.1	chr2	234227396:234227441:234229348:234229469:234231591:234231615,	234229349	234229469	234229371	234229371	Nonsense_Mutation	C	T	p.Q93*
SKCM	TCGA-3N-A9WC-06	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107160	49107160	Nonsense_Mutation	C	T	p.W256*
SKCM	TCGA-3N-A9WC-06	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204462	56204462	Nonsense_Mutation	C	T	p.W986*
SKCM	TCGA-3N-A9WC-06	TRIM69	ENST00000329464.4,ENST00000559390.1	chr15	45028763:45028908:45047097:45047574:45048565:45048661,	45047098	45047574	45047287	45047287	Nonsense_Mutation	C	T	p.Q66*
SKCM	TCGA-3N-A9WC-06	CCDC57	ENST00000389641.4,ENST00000392347.1,ENST00000392343.3,ENST00000581625.2	chr17	80151631:80151706:80151857:80152015:80153138:80153240,	80151858	80152015	80151886	80151886	Nonsense_Mutation	G	A	p.Q250*
SKCM	TCGA-3N-A9WC-06	CCDC57	ENST00000578910.1	chr17	80146225:80146295:80151631:80152015:80153138:80153240,	80151632	80152015	80151886	80151886	Nonsense_Mutation	G	A	p.Q250*
SKCM	TCGA-3N-A9WC-06	DAO	ENST00000551281.1,ENST00000547122.1,ENST00000549215.1,ENST00000547768.1,ENST00000228476.3	chr12	109290781:109290864:109292454:109292572:109293152:109293208,	109292455	109292572	109292538	109292538	Nonsense_Mutation	G	A	p.W260*
SKCM	TCGA-3N-A9WC-06	NWD1	ENST00000379808.3,ENST00000549814.1,ENST00000438489.2,ENST00000524140.2,ENST00000523826.1,ENST00000552788.1,ENST00000518676.1,ENST00000339803.6	chr19	16859949:16861222:16870035:16870239:16872789:16872949,	16870036	16870239	16870159	16870159	Nonsense_Mutation	G	A	p.W631*
SKCM	TCGA-3N-A9WC-06	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204461	56204461	Nonsense_Mutation	C	T	p.W986*
SKCM	TCGA-3N-A9WC-06	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687250	5687250	Nonsense_Mutation	G	A	p.R277*
SKCM	TCGA-3N-A9WC-06	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000434450.1,ENST00000324698.6	chr7	123104886:123105063:123109267:123109438:123119848:123120024,	123109268	123109438	123109419	123109419	Nonsense_Mutation	C	T	p.W477*
SKCM	TCGA-3N-A9WC-06	NDE1	ENST00000396354.1,ENST00000570727.1,ENST00000396353.2,ENST00000342673.5,ENST00000572756.1,ENST00000396355.1	chr16	15758592:15758718:15761142:15761296:15771657:15771801,	15761143	15761296	15761189	15761189	Nonsense_Mutation	C	T	p.R44*
SKCM	TCGA-3N-A9WC-06	TBC1D22A	ENST00000407381.3,ENST00000441162.1,ENST00000406733.1,ENST00000394449.2,ENST00000337137.4,ENST00000355704.3	chr22	47393529:47393605:47432966:47433094:47507403:47507499,	47432967	47433094	47433028	47433028	Nonsense_Mutation	G	A	p.W421*
SKCM	TCGA-3N-A9WC-06	ATP7B	ENST00000448424.2	chr13	52532446:52532680:52534283:52534458:52535972:52536051,52531651:52531743:52534283:52534458:52535972:52536049,	52534284	52534458	52534367	52534367	Nonsense_Mutation	G	A	p.Q680*
SKCM	TCGA-3N-A9WC-06	TMEM132B	ENST00000534945.1,ENST00000299308.3	chr12	125833997:125834889:125900076:125900223:126003984:126004171,	125900077	125900223	125900136	125900136	Nonsense_Mutation	G	A	p.W335*
SKCM	TCGA-3N-A9WC-06	PACRG	ENST00000366888.2,ENST00000337019.3,ENST00000366889.2	chr6	163149191:163149423:163235178:163235313:163483181:163483353,	163235179	163235313	163235239	163235239	Nonsense_Mutation	C	T	p.R73*
SKCM	TCGA-3N-A9WC-06	VEGFA	ENST00000519767.1	chr6	43746625:43746655:43748468:43748540:43749692:43749789,43746625:43746655:43748468:43748540:43752277:43752295,	43748469	43748540	43748479	43748479	Nonsense_Mutation	C	T	p.R325*
SKCM	TCGA-3N-A9WC-06	VEGFA	ENST00000523873.1,ENST00000372055.4	chr6	43746625:43746655:43748468:43748591:43749692:43749789,	43748469	43748591	43748479	43748479	Nonsense_Mutation	C	T	p.R325*
SKCM	TCGA-3N-A9WC-06	VEGFA	ENST00000518689.1,ENST00000413642.3	chr6	43746625:43746655:43748468:43748522:43749692:43749789,	43748469	43748522	43748479	43748479	Nonsense_Mutation	C	T	p.R325*
SKCM	TCGA-3N-A9WC-06	PAIP1	ENST00000436644.2,ENST00000338972.4,ENST00000306846.3,ENST00000511321.1,ENST00000514514.1	chr5	43536955:43537046:43539025:43539137:43543105:43543218,	43539026	43539137	43539082	43539082	Nonsense_Mutation	G	A	p.R264*
SKCM	TCGA-3N-A9WC-06	RUNX3	ENST00000308873.6,ENST00000399916.1,ENST00000496967.1,ENST00000338888.3,ENST00000540420.1	chr1	25229062:25229157:25233749:25233908:25245730:25245835,	25233750	25233908	25233753	25233753	Nonsense_Mutation	G	A	p.Q248*
SKCM	TCGA-3N-A9WC-06	ROCK2	ENST00000401753.1,ENST00000315872.6	chr2	11348412:11348573:11351806:11351966:11354482:11354589,	11351807	11351966	11351870	11351870	Nonsense_Mutation	G	A	p.R714*
SKCM	TCGA-3N-A9WC-06	PDXDC1	ENST00000563679.1,ENST00000563667.1,ENST00000535621.2,ENST00000567306.1,ENST00000325823.7,ENST00000570001.1,ENST00000455313.2,ENST00000396410.4,ENST00000563522.1	chr16	15092199:15092262:15095632:15095713:15098043:15098066,	15095633	15095713	15095703	15095703	Nonsense_Mutation	C	T	p.Q78*
SKCM	TCGA-3N-A9WC-06	PDXDC1	ENST00000565362.1	chr16	15092199:15092262:15095632:15095744:15098043:15098190,	15095633	15095744	15095703	15095703	Nonsense_Mutation	C	T	p.Q78*
SKCM	TCGA-3N-A9WC-06	PARP3	ENST00000417220.2,ENST00000398755.3,ENST00000471971.1,ENST00000475782.1,ENST00000431474.1	chr3	51979510:51979660:51979868:51979955:51980181:51980277,	51979869	51979955	51979923	51979923	Nonsense_Mutation	C	T	p.Q356*
SKCM	TCGA-3N-A9WC-06	DAO	ENST00000551281.1,ENST00000547122.1,ENST00000549215.1,ENST00000547768.1,ENST00000228476.3	chr12	109290781:109290864:109292454:109292572:109293152:109293208,	109292455	109292572	109292539	109292539	Nonsense_Mutation	G	A	p.W260*
SKCM	TCGA-3N-A9WC-06	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000434450.1,ENST00000324698.6	chr7	123104886:123105063:123109267:123109438:123119848:123120024,	123109268	123109438	123109418	123109418	Nonsense_Mutation	C	T	p.W477*
SKCM	TCGA-3N-A9WC-06	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748861	43748861	Nonsense_Mutation	G	A	p.Q644*
SKCM	TCGA-3N-A9WC-06	TCF12	ENST00000438423.2,ENST00000559609.1,ENST00000561420.1,ENST00000543579.1,ENST00000559703.1,ENST00000452095.2,ENST00000558210.1,ENST00000333725.5	chr15	57543547:57543621:57544618:57544690:57545459:57545666,	57544619	57544690	57544625	57544625	Nonsense_Mutation	C	T	p.R399*
SKCM	TCGA-3N-A9WC-06	CD300A	ENST00000582319.1	chr17	72462814:72462882:72469674:72470013:72470670:72470824,	72469675	72470013	72469692	72469692	Nonsense_Mutation	A	T	p.K20*
SKCM	TCGA-EB-A51B-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-EB-A51B-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-EB-A51B-01	VWA3B	ENST00000416277.1,ENST00000448638.1,ENST00000409460.1,ENST00000473149.1,ENST00000477737.1,ENST00000432242.1,ENST00000495571.1	chr2	98834308:98834491:98844664:98844795:98846512:98846670,	98844665	98844795	98844762	98844762	Nonsense_Mutation	G	A	p.W706*
SKCM	TCGA-EB-A51B-01	CNDP1	ENST00000585136.1	chr18	72201836:72201926:72223572:72223701:72226557:72226707,	72223573	72223701	72223684	72223684	Nonsense_Mutation	C	T	p.Q46*
SKCM	TCGA-EB-A3XF-01	DENND3	ENST00000517813.1,ENST00000424248.1,ENST00000523308.1,ENST00000519811.1,ENST00000262585.2,ENST00000518668.1	chr8	142199084:142199245:142200382:142200516:142202429:142202548,	142200383	142200516	142200425	142200425	Nonsense_Mutation	G	A	p.W1096*
SKCM	TCGA-EB-A3XF-01	FAM160A2	ENST00000265978.4,ENST00000524416.1,ENST00000449352.2	chr11	6244309:6244468:6244839:6245478:6245608:6245937,	6244840	6245478	6244953	6244953	Nonsense_Mutation	G	A	p.R222*
SKCM	TCGA-EB-A3XF-01	ADAMTS16	ENST00000274181.7,ENST00000433402.2	chr5	5262769:5262896:5303380:5303582:5303684:5303879,	5303381	5303582	5303383	5303383	Nonsense_Mutation	G	A	p.W931*
SKCM	TCGA-EB-A3XF-01	CCDC102A	ENST00000258214.2	chr16	57554979:57555088:57559812:57560039:57562504:57563236,	57559813	57560039	57559838	57559838	Nonsense_Mutation	G	A	p.Q263*
SKCM	TCGA-EB-A3XF-01	C8orf34	ENST00000521406.1,ENST00000539993.1,ENST00000348340.2,ENST00000518698.1,ENST00000337103.4	chr8	69358563:69358695:69380926:69381055:69400257:69400286,	69380927	69381055	69380954	69380954	Nonsense_Mutation	G	A	p.W101*
SKCM	TCGA-EB-A3XF-01	TUBGCP6	ENST00000498611.1,ENST00000439308.2	chr22	50671744:50671955:50678632:50678796:50682147:50682993,	50678633	50678796	50678773	50678773	Nonsense_Mutation	C	T	p.W255*
SKCM	TCGA-EB-A3XF-01	VWA3B	ENST00000477737.1,ENST00000432242.1,ENST00000495571.1,ENST00000489630.1	chr2	98920164:98920265:98928281:98928495:98928662:98928904,	98928282	98928495	98928328	98928328	Nonsense_Mutation	A	T	p.K1190*
SKCM	TCGA-3N-A9WB-06	CRK	ENST00000300574.2	chr17	1326690:1326944:1339913:1340449:1359170:1359443,	1339914	1340449	1340417	1340417	Nonsense_Mutation	G	A	p.Q92*
SKCM	TCGA-FS-A1ZT-06	VPS54	ENST00000272322.4	chr2	64199299:64199378:64208779:64209021:64210997:64211153,	64208780	64209021	64208967	64208967	Nonsense_Mutation	C	T	p.W64*
SKCM	TCGA-FS-A1ZT-06	VPS54	ENST00000409558.4	chr2	64199299:64199378:64208779:64208985:64210997:64211153,	64208780	64208985	64208967	64208967	Nonsense_Mutation	C	T	p.W64*
SKCM	TCGA-FS-A1ZT-06	TAT	ENST00000355962.4	chr16	71604171:71604300:71604581:71604734:71605508:71605561,	71604582	71604734	71604622	71604622	Nonsense_Mutation	C	T	p.W291*
SKCM	TCGA-FS-A1ZT-06	SLC12A8	ENST00000483944.1	chr3	124810944:124811042:124826324:124826475:124829032:124829179,	124826325	124826475	124826446	124826446	Nonsense_Mutation	C	T	p.W557*
SKCM	TCGA-FS-A1ZT-06	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1	chr3	124810944:124811042:124826324:124826970:124829032:124829179,	124826325	124826970	124826446	124826446	Nonsense_Mutation	C	T	p.W557*
SKCM	TCGA-FS-A1ZT-06	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157469765	157469765	Nonsense_Mutation	C	G	p.Y853*
SKCM	TCGA-FS-A1YW-06	PIGK	ENST00000370812.3,ENST00000359130.1	chr1	77634944:77635080:77672324:77672416:77676120:77676174,	77672325	77672416	77672386	77672386	Nonsense_Mutation	G	A	p.R60*
SKCM	TCGA-EE-A2A2-06	SSH2	ENST00000540801.1,ENST00000269033.3	chr17	27962985:27963820:27975161:27975362:27977671:27977818,	27975162	27975362	27975269	27975269	Nonsense_Mutation	C	T	p.W413*
SKCM	TCGA-EE-A2A2-06	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627395	29627395	Nonsense_Mutation	C	T	p.R130*
SKCM	TCGA-EE-A2A2-06	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627395	29627395	Nonsense_Mutation	C	T	p.R130*
SKCM	TCGA-EE-A2A2-06	PPP1R10	ENST00000376511.2	chr6	30568176:30569435:30569712:30570468:30570622:30570736,	30569713	30570468	30569809	30569809	Nonsense_Mutation	G	A	p.R873*
SKCM	TCGA-EE-A2A2-06	PTPRD	ENST00000381196.4,ENST00000486161.1,ENST00000397611.3,ENST00000537002.1,ENST00000355233.5,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000397617.3,ENST00000540109.1,ENST00000397606.3	chr9	8319830:8319966:8331581:8331736:8338921:8339047,	8331582	8331736	8331706	8331706	Nonsense_Mutation	G	A	p.Q1804*
SKCM	TCGA-EE-A2A2-06	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000487047.1	chr2	155252502:155252642:155265495:155265594:155295103:155295188,	155265496	155265594	155265592	155265592	Nonsense_Mutation	C	T	p.Q465*
SKCM	TCGA-EE-A2A2-06	PDE7B	ENST00000308191.6	chr6	136500134:136500279:136502364:136502461:136508173:136508254,	136502365	136502461	136502374	136502374	Nonsense_Mutation	A	T	p.K320*
SKCM	TCGA-EE-A2A2-06	GOLM1	ENST00000472919.1,ENST00000388711.3,ENST00000257504.6,ENST00000388712.3	chr9	88661384:88661487:88667451:88667506:88692326:88692353,	88667452	88667506	88667464	88667464	Nonsense_Mutation	G	A	p.R118*
SKCM	TCGA-EE-A2A2-06	TTYH3	ENST00000407643.1,ENST00000403167.1,ENST00000258796.7	chr7	2691820:2691876:2692551:2692644:2695725:2695818,	2692552	2692644	2692625	2692625	Nonsense_Mutation	G	A	p.W334*
SKCM	TCGA-EE-A2A2-06	ABCA4	ENST00000370225.3,ENST00000460514.1	chr1	94485137:94485315:94486795:94486965:94487195:94487270,	94486796	94486965	94486960	94486960	Nonsense_Mutation	C	T	p.W1618*
SKCM	TCGA-EE-A2A2-06	PPP1R2	ENST00000438848.1,ENST00000328432.3	chr3	195243722:195243740:195245814:195245982:195250489:195250584,	195245815	195245982	195245818	195245818	Nonsense_Mutation	G	A	p.Q190*
SKCM	TCGA-EE-A2A2-06	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379267	39379267	Nonsense_Mutation	C	T	p.Q180*
SKCM	TCGA-EE-A2A2-06	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000456652.1,ENST00000350198.4,ENST00000427603.1,ENST00000417294.1,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102314991:102315000:102407181:102407238:102440389:102440515,	102407182	102407238	102407207	102407207	Nonsense_Mutation	T	A	p.L50*
SKCM	TCGA-EE-A2A2-06	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2	chr16	16280980:16281068:16282687:16282831:16284020:16284224,	16282688	16282831	16282690	16282690	Nonsense_Mutation	G	A	p.Q593*
SKCM	TCGA-EE-A2A2-06	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63059011:63059115:63064774:63064929:63065030:63065199,	63064775	63064929	63064812	63064812	Nonsense_Mutation	C	T	p.Q27*
SKCM	TCGA-EE-A2A2-06	SLC14A1	ENST00000402943.2,ENST00000415427.3,ENST00000591541.1,ENST00000589700.1,ENST00000321925.4,ENST00000502059.2,ENST00000588179.1,ENST00000535474.1,ENST00000436407.3,ENST00000586142.1	chr18	43319492:43319627:43328340:43328390:43329742:43329912,	43328341	43328390	43328385	43328385	Nonsense_Mutation	G	A	p.W281*
SKCM	TCGA-EE-A2A2-06	RTTN	ENST00000255674.6,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67727085:67727278:67733064:67733158:67741141:67741230,	67733065	67733158	67733128	67733128	Nonsense_Mutation	G	A	p.Q1562*
SKCM	TCGA-EE-A2A2-06	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1	chr2	75928315:75928413:75929324:75929549:75933648:75933770,	75929325	75929549	75929358	75929358	Nonsense_Mutation	G	A	p.Q196*
SKCM	TCGA-EE-A2A2-06	WNT7A	ENST00000285018.4	chr3	13857754:13860920:13896028:13896300:13916443:13916610,	13896029	13896300	13896034	13896034	Nonsense_Mutation	G	A	p.R189*
SKCM	TCGA-EE-A2A2-06	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891764	2891764	Nonsense_Mutation	C	T	p.Q547*
SKCM	TCGA-EE-A2A2-06	HADHB	ENST00000537713.1,ENST00000317799.5,ENST00000425035.1,ENST00000448743.1,ENST00000405867.3,ENST00000412805.1	chr2	26477114:26477186:26477297:26477342:26486247:26486347,	26477298	26477342	26477303	26477303	Nonsense_Mutation	A	T	p.R24*
SKCM	TCGA-EE-A2A2-06	LCOR	ENST00000540664.1	chr10	98711859:98711953:98714709:98715591:98718168:98718272,	98714710	98715591	98715083	98715083	Nonsense_Mutation	C	T	p.Q236*
SKCM	TCGA-EE-A2A2-06	ZRANB1	ENST00000359653.4	chr10	126662768:126662967:126670277:126670398:126671743:126671873,	126670278	126670398	126670318	126670318	Nonsense_Mutation	C	T	p.Q490*
SKCM	TCGA-EE-A2A2-06	INPPL1	ENST00000540329.1	chr11	71940133:71940274:71940508:71940602:71940967:71941063,	71940509	71940602	71940600	71940600	Nonsense_Mutation	C	T	p.Q9*
SKCM	TCGA-EE-A2A2-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
SKCM	TCGA-EE-A2A2-06	C19orf54	ENST00000469741.2,ENST00000378313.2	chr19	41249819:41249880:41249971:41250101:41250463:41250588,	41249972	41250101	41250078	41250078	Nonsense_Mutation	G	A	p.Q181*
SKCM	TCGA-EE-A2A2-06	VIT	ENST00000379241.3,ENST00000457137.2,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1,ENST00000404084.1	chr2	36970242:36970399:36982063:36982197:36986111:36986189,	36982064	36982197	36982174	36982174	Nonsense_Mutation	G	A	p.W129*
SKCM	TCGA-D3-A8GS-06	LIFR	ENST00000506003.1,ENST00000263409.4,ENST00000453190.2	chr5	38489179:38489347:38490291:38490393:38493707:38493887,	38490292	38490393	38490352	38490352	Nonsense_Mutation	C	A	p.G703*
SKCM	TCGA-D3-A8GS-06	NDE1	ENST00000396354.1,ENST00000570727.1,ENST00000396353.2,ENST00000342673.5,ENST00000572756.1,ENST00000396355.1	chr16	15758592:15758718:15761142:15761296:15771657:15771801,	15761143	15761296	15761168	15761168	Nonsense_Mutation	C	T	p.R37*
SKCM	TCGA-EE-A2M6-06	AP1M2	ENST00000591676.1	chr19	10692423:10692554:10694281:10694746:10697865:10697895,	10694282	10694746	10694662	10694662	Nonsense_Mutation	C	A	p.E43*
SKCM	TCGA-EE-A2M6-06	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1153*
SKCM	TCGA-EE-A2M6-06	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133948000:133948109:133953595:133953787:133961020:133961122,	133953596	133953787	133953646	133953646	Nonsense_Mutation	C	T	p.Q1698*
SKCM	TCGA-Z2-A8RT-06	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871159	871159	Nonsense_Mutation	G	A	p.R444*
SKCM	TCGA-Z2-A8RT-06	VGLL3	ENST00000398399.2	chr3	86987118:86996217:87017739:87018273:87027675:87027793,	87017740	87018273	87017836	87017836	Nonsense_Mutation	T	A	p.K281*
SKCM	TCGA-Z2-A8RT-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-Z2-A8RT-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-Z2-A8RT-06	DBR1	ENST00000505015.2,ENST00000260803.4	chr3	137882619:137882700:137885922:137886147:137888948:137889034,	137885923	137886147	137886048	137886048	Nonsense_Mutation	G	A	p.R197*
SKCM	TCGA-Z2-A8RT-06	PDCD1LG2	ENST00000397747.3	chr9	5534744:5535050:5549334:5549604:5557617:5557752,	5549335	5549604	5549346	5549346	Nonsense_Mutation	A	T	p.K125*
SKCM	TCGA-Z2-A8RT-06	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818312	214818312	Nonsense_Mutation	T	A	p.L1800*
SKCM	TCGA-Z2-A8RT-06	CD68	ENST00000250092.6,ENST00000380498.6	chr17	7484028:7484101:7484213:7484384:7484695:7485429,	7484214	7484384	7484345	7484345	Nonsense_Mutation	C	T	p.Q298*
SKCM	TCGA-Z2-A8RT-06	COX7C	ENST00000515763.1	chr5	85913789:85913947:85915169:85915259:85916484:85916583,	85915170	85915259	85915220	85915220	Nonsense_Mutation	T	A	p.C42*
SKCM	TCGA-Z2-A8RT-06	COX7C	ENST00000511472.1	chr5	85913802:85913870:85915169:85915313:85916484:85916583,	85915170	85915313	85915220	85915220	Nonsense_Mutation	T	A	p.C42*
SKCM	TCGA-Z2-A8RT-06	COX7C	ENST00000513124.1	chr5	85913802:85913870:85915169:85915695:85916484:85916583,	85915170	85915695	85915220	85915220	Nonsense_Mutation	T	A	p.C42*
SKCM	TCGA-Z2-A8RT-06	MMP2	ENST00000437642.2,ENST00000570308.1,ENST00000564864.1,ENST00000219070.4,ENST00000543485.1	chr16	55517927:55518076:55519210:55519339:55519515:55519688,	55519211	55519339	55519320	55519320	Nonsense_Mutation	G	A	p.W213*
SKCM	TCGA-Z2-A8RT-06	COL9A3	ENST00000343916.3,ENST00000466192.1,ENST00000467819.1	chr20	61467829:61467884:61468434:61468617:61470035:61470113,	61468435	61468617	61468560	61468560	Nonsense_Mutation	C	T	p.R577*
SKCM	TCGA-Z2-A8RT-06	COX7B	ENST00000481445.1	chrX	77154959:77155090:77158139:77158264:77160680:77160772,	77158140	77158264	77158151	77158151	Nonsense_Mutation	C	T	p.Q18*
SKCM	TCGA-Z2-A8RT-06	SSH1	ENST00000546433.1,ENST00000360239.3,ENST00000326495.5	chr12	109178572:109183020:109186061:109186605:109192775:109192976,	109186062	109186605	109186457	109186457	Nonsense_Mutation	G	A	p.Q500*
SKCM	TCGA-Z2-A8RT-06	MYO6	ENST00000369977.3,ENST00000369985.4,ENST00000369981.3,ENST00000369975.1	chr6	76589759:76589837:76591405:76591535:76595720:76595811,	76591406	76591535	76591421	76591421	Nonsense_Mutation	C	T	p.Q768*
SKCM	TCGA-Z2-A8RT-06	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000469040.1,ENST00000334686.6,ENST00000494598.1	chr3	155211929:155212037:155212126:155212306:155215108:155215206,	155212127	155212306	155212247	155212247	Nonsense_Mutation	T	A	p.K622*
SKCM	TCGA-Z2-A8RT-06	XPO6	ENST00000304658.5,ENST00000565698.1	chr16	28177828:28177906:28181070:28181230:28187218:28187416,	28181071	28181230	28181224	28181224	Nonsense_Mutation	G	A	p.Q138*
SKCM	TCGA-Z2-A8RT-06	IREB2	ENST00000258886.8,ENST00000558570.1	chr15	78768529:78768701:78770638:78770739:78775659:78775776,	78770639	78770739	78770698	78770698	Nonsense_Mutation	C	T	p.R419*
SKCM	TCGA-Z2-A8RT-06	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85731039:85731497:85738544:85738738:85741237:85741339,	85738545	85738738	85738730	85738730	Nonsense_Mutation	G	A	p.R568*
SKCM	TCGA-Z2-A8RT-06	C3orf67	ENST00000482387.1,ENST00000295966.7	chr3	58720198:58720285:58739495:58739590:58792120:58792182,58727736:58728299:58739495:58739590:58792120:58792182,	58739496	58739590	58739499	58739499	Nonsense_Mutation	G	A	p.Q526*
SKCM	TCGA-Z2-A8RT-06	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505284	56505284	Nonsense_Mutation	C	T	p.R364*
SKCM	TCGA-Z2-A8RT-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
SKCM	TCGA-Z2-A8RT-06	RASL12	ENST00000434605.2,ENST00000421977.3,ENST00000220062.4	chr15	65347114:65347612:65350764:65350955:65351682:65351756,	65350765	65350955	65350772	65350772	Nonsense_Mutation	G	A	p.Q140*
SKCM	TCGA-Z2-A8RT-06	TBC1D12	ENST00000225235.4	chr10	96256811:96256929:96259977:96260084:96267023:96267104,	96259978	96260084	96259997	96259997	Nonsense_Mutation	C	T	p.R478*
SKCM	TCGA-Z2-A8RT-06	PARD3B	ENST00000358768.2,ENST00000462231.1,ENST00000406610.2,ENST00000349953.3	chr2	206110501:206110546:206165253:206165460:206166187:206166235,	206165254	206165460	206165385	206165385	Nonsense_Mutation	C	T	p.R773*
SKCM	TCGA-Z2-A8RT-06	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821758	97821758	Nonsense_Mutation	C	T	p.Q661*
SKCM	TCGA-Z2-A8RT-06	VPS8	ENST00000436792.2,ENST00000458721.1,ENST00000287546.4,ENST00000437079.3	chr3	184587310:184587316:184588503:184588593:184603897:184603944,	184588504	184588593	184588534	184588534	Nonsense_Mutation	C	T	p.R559*
SKCM	TCGA-Z2-A8RT-06	NOC2L	ENST00000327044.6,ENST00000477976.1	chr1	880897:881033:881552:881666:881781:881877,	881553	881666	881579	881579	Nonsense_Mutation	G	A	p.Q631*
SKCM	TCGA-Z2-A8RT-06	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3,ENST00000488166.1	chr21	35138178:35138316:35140016:35140132:35144364:35144586,	35140017	35140132	35140024	35140024	Nonsense_Mutation	C	T	p.R312*
SKCM	TCGA-WE-A8ZT-06	MATN2	ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000523490.1,ENST00000524308.1	chr8	98900302:98900470:98943180:98943750:98954004:98954127,	98943181	98943750	98943558	98943558	Nonsense_Mutation	C	T	p.Q174*
SKCM	TCGA-WE-A8ZT-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-WE-A8ZT-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-WE-A8ZT-06	DNAH17	ENST00000586052.1,ENST00000389840.5,ENST00000585328.1,ENST00000592152.1,ENST00000591369.1	chr17	76447577:76447755:76449424:76449547:76450551:76450787,	76449425	76449547	76449516	76449516	Nonsense_Mutation	C	A	p.E3466*
SKCM	TCGA-WE-A8ZT-06	GPBP1	ENST00000511209.1,ENST00000454432.2,ENST00000538707.1,ENST00000515484.2,ENST00000264779.6,ENST00000424459.3,ENST00000506184.2,ENST00000514387.2	chr5	56545283:56545403:56546780:56546968:56557006:56557065,	56546781	56546968	56546868	56546868	Nonsense_Mutation	C	T	p.Q374*
SKCM	TCGA-WE-A8ZT-06	GTF2IRD1	ENST00000424337.2,ENST00000265755.3,ENST00000476977.1,ENST00000470715.1,ENST00000455841.2	chr7	73969767:73969824:73971968:73972052:73973190:73973374,	73971969	73972052	73972046	73972046	Nonsense_Mutation	A	T	p.K701*
SKCM	TCGA-WE-A8ZT-06	IDO1	ENST00000253513.7	chr8	39775606:39775726:39776333:39776463:39780070:39780170,	39776334	39776463	39776432	39776432	Nonsense_Mutation	G	A	p.W134*
SKCM	TCGA-WE-A8ZT-06	IDO1	ENST00000519154.1,ENST00000522495.1,ENST00000518237.1,ENST00000521636.1	chr8	39775606:39775726:39776333:39776452:39777618:39777633,	39776334	39776452	39776432	39776432	Nonsense_Mutation	G	A	p.W134*
SKCM	TCGA-Z2-AA3V-06	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000589389.1,ENST00000321919.9,ENST00000586901.1,ENST00000591451.1	chr16	4873821:4873908:4881979:4882222:4882774:4882913,	4881980	4882222	4882189	4882189	Nonsense_Mutation	G	A	p.R110*
SKCM	TCGA-Z2-AA3V-06	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54684548:54684727:54708206:54708399:54714358:54714428,	54708207	54708399	54708257	54708257	Nonsense_Mutation	G	A	p.Q256*
SKCM	TCGA-Z2-AA3V-06	AHCTF1	ENST00000483900.1,ENST00000366508.1,ENST00000326225.3,ENST00000391829.2,ENST00000470300.1	chr1	247030962:247031113:247039338:247039489:247040251:247040370,	247039339	247039489	247039345	247039345	Nonsense_Mutation	G	A	p.R1063*
SKCM	TCGA-Z2-AA3V-06	TST	ENST00000249042.3	chr22	37406899:37407366:37414178:37414794:37415440:37415568,	37414179	37414794	37414242	37414242	Nonsense_Mutation	G	A	p.Q178*
SKCM	TCGA-GN-A26A-06	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46596523	46596523	Nonsense_Mutation	C	T	p.Q303*
SKCM	TCGA-GN-A26A-06	COASY	ENST00000587858.1	chr17	40714168:40714237:40714313:40714505:40714629:40714848,	40714314	40714505	40714460	40714460	Nonsense_Mutation	C	T	p.R11*
SKCM	TCGA-GN-A26A-06	COASY	ENST00000590958.1	chr17	40714168:40714237:40714373:40714505:40714629:40714848,	40714374	40714505	40714460	40714460	Nonsense_Mutation	C	T	p.R11*
SKCM	TCGA-GN-A26A-06	COASY	ENST00000420359.1	chr17	40714168:40714237:40714373:40715340:40715978:40716193,	40714374	40715340	40714460	40714460	Nonsense_Mutation	C	T	p.R11*
SKCM	TCGA-GN-A26A-06	CAPNS1	ENST00000588780.1,ENST00000588815.1,ENST00000589146.1,ENST00000590874.1,ENST00000589162.1,ENST00000587718.1,ENST00000246533.3	chr19	36636938:36636956:36637097:36637214:36640479:36640482,	36637098	36637214	36637136	36637136	Nonsense_Mutation	C	T	p.R215*
SKCM	TCGA-EE-A183-06	GOLGA2	ENST00000609374.1,ENST00000462089.1,ENST00000421699.2	chr9	131021285:131021361:131021445:131021670:131022354:131022468,	131021446	131021670	131021448	131021448	Nonsense_Mutation	G	A	p.Q672*
SKCM	TCGA-EE-A183-06	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32015510:32015789:32016139:32016427:32017046:32017364,	32016140	32016427	32016248	32016248	Nonsense_Mutation	G	A	p.R3313*
SKCM	TCGA-EE-A183-06	POLA2	ENST00000527850.1,ENST00000532469.1,ENST00000265465.3,ENST00000541089.1	chr11	65043362:65043469:65046200:65046394:65047008:65047097,	65046201	65046394	65046388	65046388	Nonsense_Mutation	C	T	p.R217*
SKCM	TCGA-EE-A183-06	ARHGAP12	ENST00000396144.4,ENST00000344936.2,ENST00000375250.5	chr10	32141444:32141525:32150322:32150586:32197099:32197802,32142993:32143134:32150322:32150586:32197099:32197802,	32150323	32150586	32150514	32150514	Nonsense_Mutation	G	A	p.Q253*
SKCM	TCGA-EE-A183-06	STK33	ENST00000396672.1,ENST00000315204.1,ENST00000534493.1,ENST00000447869.1,ENST00000473980.1,ENST00000358872.3,ENST00000486305.2	chr11	8413733:8414257:8435041:8435239:8457040:8457126,	8435042	8435239	8435184	8435184	Nonsense_Mutation	C	T	p.W401*
SKCM	TCGA-EE-A183-06	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96063853:96063922:96076482:96076598:96077273:96077487,	96076483	96076598	96076520	96076520	Nonsense_Mutation	C	T	p.W491*
SKCM	TCGA-EE-A183-06	UGT3A2	ENST00000513300.1,ENST00000282507.3	chr5	36039761:36039810:36048990:36049522:36051971:36052086,	36048991	36049522	36049059	36049059	Nonsense_Mutation	G	A	p.R259*
SKCM	TCGA-EE-A183-06	EDN3	ENST00000371028.2,ENST00000395654.3,ENST00000371025.3,ENST00000311585.7	chr20	57875757:57875919:57876464:57876777:57896071:57896248,	57876465	57876777	57876762	57876762	Nonsense_Mutation	G	A	p.W117*
SKCM	TCGA-EE-A183-06	ACSM2B	ENST00000569163.1	chr16	20559715:20559795:20563465:20563619:20565098:20565145,20560932:20561200:20563465:20563619:20565098:20565145,	20563466	20563619	20563565	20563565	Nonsense_Mutation	C	T	p.W265*
SKCM	TCGA-EE-A183-06	CC2D1A	ENST00000588932.1,ENST00000589138.1,ENST00000589679.1,ENST00000589606.1,ENST00000586955.1,ENST00000318003.7	chr19	14031372:14031481:14031562:14031735:14034145:14034212,	14031563	14031735	14031571	14031571	Nonsense_Mutation	C	T	p.Q493*
SKCM	TCGA-EB-A6R0-01	TRPV4	ENST00000537083.1,ENST00000392719.2,ENST00000538125.1,ENST00000541794.1,ENST00000544971.1,ENST00000346520.2,ENST00000536838.1,ENST00000261740.2	chr12	110240795:110240948:110246100:110246273:110252215:110252420,	110246101	110246273	110246104	110246104	Nonsense_Mutation	G	A	p.R186*
SKCM	TCGA-EB-A6R0-01	TTLL5	ENST00000554510.1,ENST00000298832.9,ENST00000557636.1,ENST00000556893.1	chr14	76286349:76286504:76330009:76330205:76349027:76349245,	76330010	76330205	76330191	76330191	Nonsense_Mutation	C	T	p.R1170*
SKCM	TCGA-EB-A6R0-01	LACTB2	ENST00000276590.4,ENST00000522447.1	chr8	71550785:71550864:71553136:71553285:71556299:71556363,	71553137	71553285	71553247	71553247	Nonsense_Mutation	G	A	p.Q211*
SKCM	TCGA-EB-A6R0-01	ADCK1	ENST00000393639.4	chr14	78288777:78288861:78325418:78325622:78353433:78353553,78288777:78288861:78325418:78325622:78365442:78365601,	78325419	78325622	78325491	78325491	Nonsense_Mutation	C	T	p.Q98*
SKCM	TCGA-EB-A6R0-01	CMTM8	ENST00000307526.3	chr3	32280170:32280611:32398864:32399038:32409363:32409480,	32398865	32399038	32399018	32399018	Nonsense_Mutation	C	T	p.Q101*
SKCM	TCGA-EB-A6R0-01	MS4A3	ENST00000278865.3	chr11	59828633:59828789:59829940:59830078:59831734:59831791,	59829941	59830078	59830066	59830066	Nonsense_Mutation	G	A	p.W94*
SKCM	TCGA-EE-A2GD-06	ABCG5	ENST00000260645.1	chr2	44052027:44052157:44053520:44053660:44055121:44055254,	44053521	44053660	44053607	44053607	Nonsense_Mutation	G	A	p.Q230*
SKCM	TCGA-EE-A2GD-06	SNRK	ENST00000429705.2,ENST00000437827.1,ENST00000454177.1,ENST00000296088.7	chr3	43373660:43373802:43381778:43381991:43384835:43384970,	43381779	43381991	43381975	43381975	Nonsense_Mutation	C	T	p.R310*
SKCM	TCGA-EE-A2GD-06	SPNS1	ENST00000323081.8,ENST00000565975.1,ENST00000311008.11	chr16	28990725:28990792:28992790:28992936:28993676:28993696,28990725:28990792:28992790:28992936:28993221:28993377,	28992791	28992936	28992876	28992876	Nonsense_Mutation	C	G	p.S250*
SKCM	TCGA-EE-A2GD-06	SPNS1	ENST00000566059.1	chr16	28990725:28990792:28992775:28992936:28993221:28993377,	28992776	28992936	28992876	28992876	Nonsense_Mutation	C	G	p.S250*
SKCM	TCGA-EE-A2GD-06	ITGB8	ENST00000222573.4,ENST00000537992.1,ENST00000478974.1	chr7	20420288:20420454:20421349:20421508:20431025:20431121,	20421350	20421508	20421377	20421377	Nonsense_Mutation	A	T	p.K277*
SKCM	TCGA-EE-A2GD-06	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127915952	127915952	Nonsense_Mutation	G	A	p.R214*
SKCM	TCGA-EE-A29S-06	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42237006	42237006	Nonsense_Mutation	C	T	p.W108*
SKCM	TCGA-EE-A29S-06	ADAM28	ENST00000437154.2,ENST00000265769.4	chr8	24170900:24171093:24177748:24177820:24178730:24178802,	24177749	24177820	24177770	24177770	Nonsense_Mutation	C	T	p.Q200*
SKCM	TCGA-EE-A29S-06	VWA8	ENST00000379310.3	chr13	42245081:42245283:42249350:42249432:42259182:42259378,	42249351	42249432	42249370	42249370	Nonsense_Mutation	G	A	p.R1464*
SKCM	TCGA-EE-A29S-06	ADTRP	ENST00000505099.1,ENST00000414691.3,ENST00000512139.1,ENST00000229583.5	chr6	11717541:11717647:11723581:11723733:11735800:11735889,11714610:11714745:11723581:11723733:11728559:11728790,11714610:11714745:11723581:11723733:11735800:11735889,	11723582	11723733	11723584	11723584	Nonsense_Mutation	C	T	p.W219*
SKCM	TCGA-EE-A29S-06	ENPEP	ENST00000265162.5	chr4	111470871:111471042:111474470:111474611:111480802:111480881,	111474471	111474611	111474532	111474532	Nonsense_Mutation	C	T	p.R855*
SKCM	TCGA-EE-A29S-06	NME7	ENST00000367811.3,ENST00000472647.1,ENST00000483228.1	chr1	169138758:169138792:169199955:169200057:169204368:169204437,	169199956	169200057	169199982	169199982	Nonsense_Mutation	G	A	p.R322*
SKCM	TCGA-EE-A29S-06	AGXT2	ENST00000231420.6,ENST00000510428.1	chr5	35037046:35037170:35039428:35039613:35047909:35047995,35037046:35037170:35039428:35039613:35040679:35040765,	35039429	35039613	35039544	35039544	Nonsense_Mutation	G	A	p.Q83*
SKCM	TCGA-EE-A29S-06	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751222	13751222	Nonsense_Mutation	G	A	p.Q3726*
SKCM	TCGA-EE-A29S-06	P4HA3	ENST00000427714.2,ENST00000524388.1,ENST00000331597.4	chr11	73984589:73984652:73988029:73988189:73990432:73990491,	73988030	73988189	73988184	73988184	Nonsense_Mutation	C	T	p.W394*
SKCM	TCGA-EE-A29S-06	CD19	ENST00000567541.1,ENST00000538922.1,ENST00000565089.1,ENST00000324662.3	chr16	28944752:28944830:28946764:28946875:28947473:28947522,	28946765	28946875	28946799	28946799	Nonsense_Mutation	G	A	p.W290*
SKCM	TCGA-EE-A29S-06	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199780	20199780	Nonsense_Mutation	C	T	p.W68*
SKCM	TCGA-EE-A2M8-06	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1615912:1616245:1616833:1617151,	1615913	1616245	1616064	1616064	Nonsense_Mutation	C	T	p.W277*
SKCM	TCGA-EE-A2M8-06	CPE	ENST00000402744.4	chr4	166414322:166414422:166416710:166416829:166418663:166419472,	166416711	166416829	166416768	166416768	Nonsense_Mutation	C	G	p.S424*
SKCM	TCGA-EE-A2M8-06	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1615912:1616245:1616833:1617151,	1615913	1616245	1616065	1616065	Nonsense_Mutation	C	T	p.W277*
SKCM	TCGA-BF-AAP0-06	TRPC7	ENST00000502753.2	chr5	135610360:135610525:135651284:135651467:135692295:135693073,135601907:135602124:135651284:135651467:135692295:135693073,	135651285	135651467	135651349	135651349	Nonsense_Mutation	C	T	p.W300*
SKCM	TCGA-BF-AAP0-06	PMFBP1	ENST00000237353.10,ENST00000355636.6,ENST00000537465.1,ENST00000379073.5	chr16	72156812:72156887:72157444:72157548:72158665:72158752,	72157445	72157548	72157459	72157459	Nonsense_Mutation	C	T	p.W898*
SKCM	TCGA-BF-AAP0-06	SPOCK3	ENST00000507370.1,ENST00000541354.1,ENST00000421836.2,ENST00000511269.1,ENST00000504953.1,ENST00000511905.1,ENST00000534949.1,ENST00000505187.1,ENST00000502821.1,ENST00000511531.1,ENST00000512681.1,ENST00000357154.3,ENST00000502330.1,ENST00000357545.4,ENST00000506886.1,ENST00000507137.1,ENST00000541637.1	chr4	167663147:167663210:167675658:167675880:167713320:167713440,	167675659	167675880	167675685	167675685	Nonsense_Mutation	C	T	p.W305*
SKCM	TCGA-EE-A17X-06	RABL6	ENST00000436380.1,ENST00000311502.7,ENST00000432842.2,ENST00000357466.2,ENST00000484471.2,ENST00000425121.1,ENST00000371671.4,ENST00000371663.4,ENST00000464941.1	chr9	139720234:139720278:139722945:139722998:139723844:139723936,	139722946	139722998	139722973	139722973	Nonsense_Mutation	T	G	p.L114*
SKCM	TCGA-EE-A17X-06	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433320:10433415:10433820:10433950:10434050:10434242,	10433821	10433950	10433932	10433932	Nonsense_Mutation	C	A	p.G340*
SKCM	TCGA-EE-A17X-06	OSBP2	ENST00000382310.3,ENST00000332585.6,ENST00000446658.2	chr22	31090194:31090331:31137147:31137356:31266415:31266600,31091362:31091540:31137147:31137356:31266415:31266600,	31137148	31137356	31137152	31137152	Nonsense_Mutation	C	T	p.Q217*
SKCM	TCGA-EE-A17X-06	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835116	82835116	Nonsense_Mutation	G	A	p.W2098*
SKCM	TCGA-EE-A17X-06	POLA2	ENST00000527850.1,ENST00000532469.1,ENST00000265465.3,ENST00000541089.1	chr11	65043362:65043469:65046200:65046394:65047008:65047097,	65046201	65046394	65046214	65046214	Nonsense_Mutation	C	T	p.Q159*
SKCM	TCGA-EE-A17X-06	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000498422.1,ENST00000469153.1	chr3	63821976:63822034:63823651:63823738:63824047:63824175,	63823652	63823738	63823682	63823682	Nonsense_Mutation	G	A	p.Q108*
SKCM	TCGA-EE-A17X-06	APBB1IP	ENST00000376236.4	chr10	26822367:26822454:26825002:26825146:26830510:26830621,	26825003	26825146	26825083	26825083	Nonsense_Mutation	G	A	p.W327*
SKCM	TCGA-EE-A17X-06	NAALAD2	ENST00000534061.1	chr11	89891312:89891406:89892406:89892505:89896116:89896202,	89892407	89892505	89892443	89892443	Nonsense_Mutation	G	A	p.W309*
SKCM	TCGA-GN-A265-06	CEP76	ENST00000262127.2,ENST00000423709.2,ENST00000590143.1	chr18	12686372:12686449:12691357:12691486:12695252:12695318,	12691358	12691486	12691399	12691399	Nonsense_Mutation	G	A	p.R298*
SKCM	TCGA-GN-A265-06	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67816345:67816464:67816547:67816761:67817129:67817255,	67816548	67816761	67816662	67816662	Nonsense_Mutation	G	A	p.W596*
SKCM	TCGA-GN-A265-06	ACOT12	ENST00000307624.3	chr5	80631586:80631720:80638490:80638574:80639636:80639700,	80638491	80638574	80638515	80638515	Nonsense_Mutation	C	T	p.W368*
SKCM	TCGA-GN-A265-06	DSG2	ENST00000261590.8,ENST00000585206.1	chr18	29099765:29099900:29100765:29100927:29101061:29101206,	29100766	29100927	29100904	29100904	Nonsense_Mutation	C	T	p.R119*
SKCM	TCGA-BF-A3DJ-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072257	63072257	Nonsense_Mutation	G	A	p.W498*
SKCM	TCGA-BF-A3DJ-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310477	103310477	Nonsense_Mutation	C	T	p.R560*
SKCM	TCGA-BF-A3DJ-01	FAR1	ENST00000527202.1	chr11	13733310:13733355:13733474:13733602:13734512:13734580,	13733475	13733602	13733493	13733493	Nonsense_Mutation	C	T	p.R263*
SKCM	TCGA-BF-A3DJ-01	FAR1	ENST00000354817.3,ENST00000532701.1	chr11	13733310:13733355:13733474:13733593:13734512:13734580,	13733475	13733593	13733493	13733493	Nonsense_Mutation	C	T	p.R263*
SKCM	TCGA-FR-A3YO-06	FOLH1	ENST00000340334.7,ENST00000356696.3,ENST00000533034.1,ENST00000256999.2	chr11	49204700:49204794:49207220:49207407:49208195:49208320,	49207221	49207407	49207395	49207395	Nonsense_Mutation	G	A	p.Q203*
SKCM	TCGA-FR-A3YO-06	ZSCAN31	ENST00000439158.1	chr6	28295248:28295310:28297079:28297555:28303858:28303911,28295248:28295310:28297079:28297555:28303606:28303713,	28297080	28297555	28297379	28297379	Nonsense_Mutation	G	A	p.R28*
SKCM	TCGA-FR-A3YO-06	ZSCAN31	ENST00000447021.1	chr6	28295248:28295310:28297079:28297491:28303858:28303911,28295248:28295310:28297079:28297491:28304566:28304720,28295248:28295310:28297079:28297491:28303606:28303713,	28297080	28297491	28297379	28297379	Nonsense_Mutation	G	A	p.R28*
SKCM	TCGA-FR-A3YO-06	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349481	89349481	Nonsense_Mutation	C	A	p.E1157*
SKCM	TCGA-FR-A3YO-06	AP3B2	ENST00000535359.1,ENST00000261722.3,ENST00000535348.1,ENST00000543938.1	chr15	83330919:83331004:83331445:83331674:83331878:83331985,	83331446	83331674	83331464	83331464	Nonsense_Mutation	G	A	p.Q920*
SKCM	TCGA-FR-A3YO-06	MLF1	ENST00000482628.1,ENST00000355893.5,ENST00000495452.1,ENST00000359117.5,ENST00000484955.1,ENST00000487838.1	chr3	158288983:158289180:158314650:158314734:158315868:158315949,158310222:158310370:158314650:158314734:158315868:158315949,	158314651	158314734	158314672	158314672	Nonsense_Mutation	C	T	p.Q48*
SKCM	TCGA-FR-A3YO-06	TRPC6	ENST00000360497.4	chr11	101353679:101353896:101362286:101362469:101374754:101374821,	101362287	101362469	101362289	101362289	Nonsense_Mutation	T	A	p.K376*
SKCM	TCGA-FR-A3YO-06	GPATCH2	ENST00000366935.3,ENST00000366934.3	chr1	217783662:217783742:217784230:217784413:217787482:217787544,	217784231	217784413	217784272	217784272	Nonsense_Mutation	A	C	p.L326*
SKCM	TCGA-FR-A3YO-06	CNTN4	ENST00000422330.1,ENST00000418658.1,ENST00000455083.1,ENST00000397461.1,ENST00000427741.1	chr3	2380861:2380917:2613099:2613242:2777898:2778007,	2613100	2613242	2613202	2613202	Nonsense_Mutation	G	A	p.W5*
SKCM	TCGA-FR-A3YO-06	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118649	58118649	Nonsense_Mutation	C	T	p.Q586*
SKCM	TCGA-FR-A3YO-06	PER1	ENST00000581082.1,ENST00000354903.5,ENST00000582719.1,ENST00000317276.4	chr17	8048068:8048165:8049275:8049455:8049689:8049806,8048077:8048311:8049275:8049455:8049689:8049806,	8049276	8049455	8049363	8049363	Nonsense_Mutation	T	A	p.K711*
SKCM	TCGA-FR-A3YO-06	YTHDC1	ENST00000355665.3,ENST00000579690.1,ENST00000344157.4	chr4	69184543:69184580:69185840:69185923:69188466:69188633,	69185841	69185923	69185919	69185919	Nonsense_Mutation	G	A	p.R536*
SKCM	TCGA-FR-A3YO-06	CNTN4	ENST00000422330.1,ENST00000418658.1,ENST00000455083.1,ENST00000397461.1,ENST00000427741.1	chr3	2380861:2380917:2613099:2613242:2777898:2778007,	2613100	2613242	2613201	2613201	Nonsense_Mutation	G	A	p.W5*
SKCM	TCGA-FR-A3YO-06	SYNJ2	ENST00000367121.3,ENST00000367122.2,ENST00000355585.4	chr6	158438235:158438322:158449787:158450058:158454486:158454712,	158449788	158450058	158450041	158450041	Nonsense_Mutation	G	A	p.W156*
SKCM	TCGA-FR-A3YO-06	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	138163182:138163377:138169178:138169442:138208414:138208593,	138169179	138169442	138169325	138169325	Nonsense_Mutation	C	T	p.R948*
SKCM	TCGA-FR-A3YO-06	MRC2	ENST00000303375.5,ENST00000583597.1,ENST00000446119.2	chr17	60765649:60765764:60765861:60766025:60766212:60766321,	60765862	60766025	60765904	60765904	Nonsense_Mutation	G	A	p.W1035*
SKCM	TCGA-BF-A1Q0-01	PSME3	ENST00000589469.1,ENST00000543428.1,ENST00000591722.1,ENST00000592578.1,ENST00000591152.1,ENST00000590720.1,ENST00000541124.1,ENST00000441946.2,ENST00000293362.3,ENST00000586114.1,ENST00000585805.1,ENST00000586312.1,ENST00000545225.1	chr17	40986360:40986393:40986531:40986594:40986788:40986821,	40986532	40986594	40986569	40986569	Nonsense_Mutation	T	G	p.L38*
SKCM	TCGA-BF-A1Q0-01	SYCP2	ENST00000357552.3,ENST00000371001.2,ENST00000412613.1	chr20	58440861:58440920:58441347:58441447:58441549:58441644,	58441348	58441447	58441356	58441356	Nonsense_Mutation	C	A	p.E1438*
SKCM	TCGA-BF-A1Q0-01	CPXM2	ENST00000368854.3,ENST00000241305.3	chr10	125516728:125516868:125521387:125521685:125526488:125526668,	125521388	125521685	125521563	125521563	Nonsense_Mutation	C	T	p.W534*
SKCM	TCGA-BF-A1Q0-01	ALDH16A1	ENST00000433981.2,ENST00000593417.1	chr19	49956555:49956678:49962926:49963105:49964078:49964156,	49962927	49963105	49963009	49963009	Nonsense_Mutation	C	T	p.R135*
SKCM	TCGA-BF-A1Q0-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119495677:119495802:119567910:119568099:119582895:119583062,	119567911	119568099	119567924	119567924	Nonsense_Mutation	G	A	p.Q795*
SKCM	TCGA-BF-A1Q0-01	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324454	158324454	Nonsense_Mutation	C	T	p.Q116*
SKCM	TCGA-EB-A551-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48877151:48877272:48878746:48878967:48879924:48880045,	48878747	48878967	48878827	48878827	Nonsense_Mutation	C	T	p.Q305*
SKCM	TCGA-EB-A551-01	MCM4	ENST00000520637.1	chr8	48877151:48877272:48878746:48878835:48879924:48880045,	48878747	48878835	48878827	48878827	Nonsense_Mutation	C	T	p.Q305*
SKCM	TCGA-EB-A551-01	GGN	ENST00000334928.6	chr19	38874992:38875169:38876060:38877920:38878400:38878462,	38876061	38877920	38876120	38876120	Nonsense_Mutation	G	T	p.C594*
SKCM	TCGA-EB-A551-01	GGN	ENST00000591809.1	chr19	38874992:38875169:38876060:38876140:38878400:38878462,	38876061	38876140	38876120	38876120	Nonsense_Mutation	G	T	p.C594*
SKCM	TCGA-EB-A551-01	CDK1	ENST00000395284.3,ENST00000519078.2	chr10	62545428:62545545:62547817:62547988:62551647:62551727,	62547818	62547988	62547926	62547926	Nonsense_Mutation	A	T	p.K143*
SKCM	TCGA-FS-A4FB-06	ANO4	ENST00000392977.3,ENST00000392979.3,ENST00000550015.1,ENST00000299222.9	chr12	101505340:101505488:101510456:101510576:101514297:101514403,	101510457	101510576	101510497	101510497	Nonsense_Mutation	C	T	p.R796*
SKCM	TCGA-FS-A4FB-06	WIPF2	ENST00000585043.1,ENST00000583130.1,ENST00000584296.1,ENST00000323571.4	chr17	38412642:38412774:38416786:38416919:38430041:38430251,38412642:38412774:38416786:38416919:38418776:38418890,	38416787	38416919	38416832	38416832	Nonsense_Mutation	C	T	p.R37*
SKCM	TCGA-FS-A4FB-06	WIPF2	ENST00000582781.1	chr17	38412642:38412774:38416786:38416879:38418776:38418890,	38416787	38416879	38416832	38416832	Nonsense_Mutation	C	T	p.R37*
SKCM	TCGA-DA-A1IC-06	RPH3A	ENST00000548197.1,ENST00000546703.1,ENST00000543106.2,ENST00000552667.1,ENST00000389385.4,ENST00000547840.1,ENST00000548866.1,ENST00000549769.1,ENST00000547728.1,ENST00000549736.1,ENST00000415485.3,ENST00000551198.1	chr12	113230051:113230068:113266105:113266194:113285500:113285536,113229947:113230068:113266105:113266194:113274295:113274307,	113266106	113266194	113266162	113266162	Nonsense_Mutation	G	A	p.W13*
SKCM	TCGA-DA-A1IC-06	ZMAT4	ENST00000297737.6,ENST00000519406.1	chr8	40438722:40438780:40532222:40532450:40554763:40554856,	40532223	40532450	40532385	40532385	Nonsense_Mutation	G	A	p.Q139*
SKCM	TCGA-DA-A1IC-06	PCSK5	ENST00000545128.1,ENST00000376767.3,ENST00000376752.4	chr9	78686641:78686814:78710805:78711018:78722166:78722267,	78710806	78711018	78711013	78711013	Nonsense_Mutation	A	T	p.K368*
SKCM	TCGA-DA-A1IC-06	TNIP3	ENST00000057513.3,ENST00000454328.1	chr4	122053691:122053817:122059778:122059839:122062970:122063054,	122059779	122059839	122059830	122059830	Nonsense_Mutation	G	A	p.Q299*
SKCM	TCGA-DA-A1IC-06	ARHGEF3	ENST00000498517.1,ENST00000473779.1,ENST00000338458.4,ENST00000468727.1,ENST00000477833.1,ENST00000477440.2,ENST00000481422.1,ENST00000496106.1	chr3	56789099:56789179:56807736:56807844:56916319:56916382,	56807737	56807844	56807811	56807811	Nonsense_Mutation	G	A	p.R50*
SKCM	TCGA-DA-A1IC-06	TINAGL1	ENST00000468635.1,ENST00000457433.2,ENST00000478398.1,ENST00000498429.1,ENST00000271064.7	chr1	32050282:32050402:32050486:32050637:32050751:32050941,	32050487	32050637	32050549	32050549	Nonsense_Mutation	C	T	p.Q257*
SKCM	TCGA-DA-A1IC-06	RPH3A	ENST00000548197.1,ENST00000546703.1,ENST00000543106.2,ENST00000552667.1,ENST00000389385.4,ENST00000547840.1,ENST00000548866.1,ENST00000549769.1,ENST00000547728.1,ENST00000549736.1,ENST00000415485.3,ENST00000551198.1	chr12	113230051:113230068:113266105:113266194:113285500:113285536,113229947:113230068:113266105:113266194:113274295:113274307,	113266106	113266194	113266161	113266161	Nonsense_Mutation	G	A	p.W13*
SKCM	TCGA-EB-A5UM-01	SERP1	ENST00000479209.1	chr3	150262099:150262285:150263489:150263565:150263838:150264286,	150263490	150263565	150263527	150263527	Nonsense_Mutation	C	T	p.W41*
SKCM	TCGA-EB-A5UM-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292383	96292383	Nonsense_Mutation	G	A	p.R166*
SKCM	TCGA-EB-A5UM-01	SERP1	ENST00000479209.1	chr3	150262099:150262285:150263489:150263565:150263838:150264286,	150263490	150263565	150263528	150263528	Nonsense_Mutation	C	T	p.W41*
SKCM	TCGA-DA-A95Z-06	PARD3	ENST00000374789.3,ENST00000374794.3,ENST00000545693.1,ENST00000545260.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34408540:34408668:34420390:34420511:34558584:34558827,	34420391	34420511	34420456	34420456	Nonsense_Mutation	G	A	p.Q1162*
SKCM	TCGA-DA-A95Z-06	KIF26B	ENST00000407071.2	chr1	245319583:245319985:245530135:245530669:245582880:245583047,	245530136	245530669	245530598	245530598	Nonsense_Mutation	C	T	p.Q310*
SKCM	TCGA-DA-A95Z-06	CAPN13	ENST00000450650.1	chr2	30957314:30957390:30959368:30959495:30960027:30961159,	30959369	30959495	30959398	30959398	Nonsense_Mutation	G	A	p.R565*
SKCM	TCGA-DA-A95Z-06	CD1B	ENST00000368168.3	chr1	158298710:158298804:158299159:158299438:158299641:158299920,	158299160	158299438	158299316	158299316	Nonsense_Mutation	C	A	p.E244*
SKCM	TCGA-DA-A95Z-06	TMED9	ENST00000513799.1,ENST00000510499.1,ENST00000332598.6	chr5	177020650:177020776:177021139:177021286:177022267:177022387,	177021140	177021286	177021263	177021263	Nonsense_Mutation	C	T	p.Q179*
SKCM	TCGA-DA-A95Z-06	UBAP2L	ENST00000271877.7,ENST00000428931.1,ENST00000343815.6,ENST00000361546.2	chr1	154223956:154224129:154226375:154226565:154227311:154227366,	154226376	154226565	154226542	154226542	Nonsense_Mutation	C	T	p.Q611*
SKCM	TCGA-DA-A95Z-06	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106508223	106508223	Nonsense_Mutation	C	T	p.Q73*
SKCM	TCGA-DA-A95Z-06	NF1	ENST00000495910.2,ENST00000358273.4,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29553452:29553702:29554235:29554309:29554540:29554624,	29554236	29554309	29554250	29554250	Nonsense_Mutation	C	T	p.Q756*
SKCM	TCGA-DA-A95Z-06	CTSC	ENST00000527018.1,ENST00000227266.5	chr11	88029326:88029432:88033697:88033813:88042330:88042486,	88033698	88033813	88033707	88033707	Nonsense_Mutation	G	A	p.R250*
SKCM	TCGA-DA-A95Z-06	AK5	ENST00000344720.5,ENST00000354567.2	chr1	77987511:77987628:78001531:78001723:78024286:78024414,	78001532	78001723	78001598	78001598	Nonsense_Mutation	C	T	p.Q473*
SKCM	TCGA-DA-A95Z-06	PRSS1	ENST00000311737.7	chr7	142457331:142457375:142458405:142458565:142459624:142459634,	142458406	142458565	142458477	142458477	Nonsense_Mutation	C	T	p.Q38*
SKCM	TCGA-DA-A95Z-06	RNF141	ENST00000528665.1	chr11	10552189:10552298:10555562:10555752:10562668:10562737,	10555563	10555752	10555624	10555624	Nonsense_Mutation	G	A	p.R28*
SKCM	TCGA-DA-A95Z-06	KIF26B	ENST00000407071.2	chr1	245319583:245319985:245530135:245530669:245582880:245583047,	245530136	245530669	245530200	245530200	Nonsense_Mutation	G	A	p.W177*
SKCM	TCGA-DA-A95Z-06	ACSM2A	ENST00000575690.1,ENST00000219054.6,ENST00000571894.1,ENST00000576361.1	chr16	20462932:20463003:20471428:20471613:20476838:20476978,20463753:20463788:20471428:20471613:20476838:20476978,	20471429	20471613	20471458	20471458	Nonsense_Mutation	C	T	p.Q8*
SKCM	TCGA-DA-A95Z-06	APOBEC3A	ENST00000249116.2,ENST00000402255.1	chr22	39353592:39353725:39355546:39355691:39357391:39357686,	39355547	39355691	39355613	39355613	Nonsense_Mutation	C	A	p.Y32*
SKCM	TCGA-DA-A95Z-06	DPYSL3	ENST00000520473.1,ENST00000343218.5,ENST00000398514.3	chr5	146778644:146778815:146780254:146780396:146781102:146781165,	146780255	146780396	146780290	146780290	Nonsense_Mutation	C	A	p.E473*
SKCM	TCGA-DA-A95Z-06	MYO1A	ENST00000554234.1,ENST00000544473.1,ENST00000442789.2,ENST00000300119.3	chr12	57437023:57437142:57437639:57437787:57437889:57437993,	57437640	57437787	57437748	57437748	Nonsense_Mutation	G	A	p.R262*
SKCM	TCGA-DA-A95Z-06	LMF1	ENST00000262301.11,ENST00000570014.1,ENST00000566627.1	chr16	943006:943072:960930:961079:981641:981793,943006:943072:960930:961079:984189:984254,943006:943072:960930:961079:984243:984254,	960931	961079	960970	960970	Nonsense_Mutation	C	T	p.W208*
SKCM	TCGA-DA-A95Z-06	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873660	35873660	Nonsense_Mutation	C	T	p.R206*
SKCM	TCGA-DA-A95Z-06	ELAVL2	ENST00000223951.6	chr9	23691808:23692882:23701376:23701602:23704915:23705069,	23701377	23701602	23701576	23701576	Nonsense_Mutation	G	A	p.R172*
SKCM	TCGA-DA-A95Z-06	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052151	50052151	Nonsense_Mutation	C	T	p.Q328*
SKCM	TCGA-DA-A95Z-06	CPT1C	ENST00000323446.5,ENST00000598259.1,ENST00000595031.1,ENST00000354199.5,ENST00000599023.1,ENST00000596701.1,ENST00000405931.2,ENST00000392518.4,ENST00000598293.1,ENST00000295404.5	chr19	50210774:50210880:50211979:50212096:50213576:50213741,	50211980	50212096	50212004	50212004	Nonsense_Mutation	C	T	p.Q492*
SKCM	TCGA-DA-A95Z-06	NOTCH4	ENST00000375023.3,ENST00000474612.1	chr6	32166434:32166507:32166702:32166922:32168607:32168783,	32166703	32166922	32166908	32166908	Nonsense_Mutation	G	A	p.Q1444*
SKCM	TCGA-DA-A95Z-06	CCT7	ENST00000258091.5,ENST00000399032.2,ENST00000539919.1,ENST00000469844.1,ENST00000461290.1	chr2	73467564:73467671:73470131:73470257:73471124:73471157,	73470132	73470257	73470219	73470219	Nonsense_Mutation	C	T	p.Q75*
SKCM	TCGA-BF-AAP1-01	SPIDR	ENST00000521214.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48508372:48508568:48511507:48511758:48586362:48586503,	48511508	48511758	48511546	48511546	Nonsense_Mutation	G	A	p.W444*
SKCM	TCGA-BF-AAP1-01	TGM3	ENST00000381458.5	chr20	2306494:2306598:2308765:2309011:2312647:2312956,	2308766	2309011	2308804	2308804	Nonsense_Mutation	C	T	p.R376*
SKCM	TCGA-BF-AAP1-01	CEACAM7	ENST00000401731.1	chr19	42187975:42187994:42190789:42191152:42192030:42192096,	42190790	42191152	42190985	42190985	Nonsense_Mutation	G	A	p.R78*
SKCM	TCGA-BF-AAP1-01	SELE	ENST00000333360.7	chr1	169696489:169696666:169696879:169697068:169697198:169697387,	169696880	169697068	169696906	169696906	Nonsense_Mutation	C	T	p.W481*
SKCM	TCGA-BF-AAP1-01	SPIDR	ENST00000521214.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48508372:48508568:48511507:48511758:48586362:48586503,	48511508	48511758	48511545	48511545	Nonsense_Mutation	G	A	p.W444*
SKCM	TCGA-BF-AAP1-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145640307:145640461:145641072:145641369:145643053:145643082,	145641073	145641369	145641181	145641181	Nonsense_Mutation	C	T	p.R668*
SKCM	TCGA-BF-AAP1-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81412056	81412056	Nonsense_Mutation	C	T	p.Q434*
SKCM	TCGA-BF-AAP1-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562851	145562851	Nonsense_Mutation	C	T	p.Q847*
SKCM	TCGA-BF-AAP1-01	TCF12	ENST00000438423.2,ENST00000559609.1,ENST00000561420.1,ENST00000543579.1,ENST00000559703.1,ENST00000452095.2,ENST00000558210.1,ENST00000333725.5	chr15	57543547:57543621:57544618:57544690:57545459:57545666,	57544619	57544690	57544625	57544625	Nonsense_Mutation	C	T	p.R399*
SKCM	TCGA-BF-AAP1-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108593	14108593	Nonsense_Mutation	C	T	p.Q1435*
SKCM	TCGA-FR-A3R1-01	LIMCH1	ENST00000512946.1,ENST00000313860.7,ENST00000512820.1,ENST00000396595.3,ENST00000508466.1,ENST00000503057.1,ENST00000514096.1,ENST00000511496.1,ENST00000381753.4,ENST00000513024.1,ENST00000509277.1,ENST00000508501.1	chr4	41678398:41678479:41682022:41682115:41682971:41683076,	41682023	41682115	41682063	41682063	Nonsense_Mutation	G	A	p.W803*
SKCM	TCGA-FR-A3R1-01	WNK2	ENST00000448039.1,ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96002038:96002258:96009824:96010116:96015164:96015364,	96009825	96010116	96009900	96009900	Nonsense_Mutation	C	T	p.Q540*
SKCM	TCGA-DA-A1I0-06	FAM227B	ENST00000299338.6	chr15	49833876:49834003:49860441:49860543:49867207:49867306,	49860442	49860543	49860462	49860462	Nonsense_Mutation	G	A	p.R243*
SKCM	TCGA-DA-A1I0-06	PIN1	ENST00000587625.1,ENST00000247970.4,ENST00000588695.1	chr19	9946044:9946078:9949111:9949324:9958705:9958816,	9949112	9949324	9949114	9949114	Nonsense_Mutation	C	T	p.R21*
SKCM	TCGA-DA-A1I0-06	CLMP	ENST00000448775.2,ENST00000529128.1	chr11	122954387:122954555:122955219:122955421:122968502:122968660,	122955220	122955421	122955364	122955364	Nonsense_Mutation	G	A	p.R82*
SKCM	TCGA-DA-A1I0-06	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20348612:20348775:20352412:20352658:20355345:20355448,	20352413	20352658	20352420	20352420	Nonsense_Mutation	G	A	p.Q557*
SKCM	TCGA-DA-A1I0-06	NEK8	ENST00000268766.6	chr17	27065688:27065765:27066101:27066219:27067480:27067631,	27066102	27066219	27066202	27066202	Nonsense_Mutation	G	A	p.W467*
SKCM	TCGA-DA-A1I0-06	SEPHS1	ENST00000545675.1,ENST00000378614.4	chr10	13380715:13380808:13386757:13387028:13389999:13390030,	13386758	13387028	13386800	13386800	Nonsense_Mutation	G	A	p.Q51*
SKCM	TCGA-ER-A42K-06	ITM2C	ENST00000457215.1,ENST00000326427.6,ENST00000326407.6	chr2	231729694:231729860:231738131:231738272:231740334:231740519,	231738132	231738272	231738153	231738153	Nonsense_Mutation	C	T	p.R48*
SKCM	TCGA-ER-A42K-06	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641212	36641212	Nonsense_Mutation	A	T	p.L336*
SKCM	TCGA-ER-A42K-06	CD1E	ENST00000368161.3	chr1	158325317:158325359:158325616:158325791:158326287:158326381,	158325617	158325791	158325757	158325757	Nonsense_Mutation	C	T	p.R157*
SKCM	TCGA-ER-A42K-06	CD1E	ENST00000368160.3,ENST00000444681.2,ENST00000368167.3	chr1	158325317:158325359:158325616:158325895:158326287:158326381,	158325617	158325895	158325757	158325757	Nonsense_Mutation	C	T	p.R157*
SKCM	TCGA-ER-A42K-06	DSC3	ENST00000434452.1,ENST00000360428.4	chr18	28605725:28605881:28609474:28609594:28610938:28611138,	28609475	28609594	28609539	28609539	Nonsense_Mutation	C	T	p.W137*
SKCM	TCGA-ER-A42K-06	OAZ3	ENST00000453029.2,ENST00000400999.1,ENST00000321531.5,ENST00000315067.8	chr1	151739700:151739775:151740533:151740709:151742647:151742733,	151740534	151740709	151740681	151740681	Nonsense_Mutation	C	T	p.Q106*
SKCM	TCGA-DA-A1I1-06	ALG13	ENST00000394780.3,ENST00000251943.4,ENST00000495283.1	chrX	110928198:110928331:110951254:110951621:110952192:110952257,	110951255	110951621	110951568	110951568	Nonsense_Mutation	C	T	p.R233*
SKCM	TCGA-DA-A1I1-06	LARP1	ENST00000336314.4	chr5	154183780:154183867:154185440:154185592:154188018:154188163,	154185441	154185592	154185511	154185511	Nonsense_Mutation	C	T	p.Q796*
SKCM	TCGA-DA-A1I1-06	OFCC1	ENST00000469426.1	chr6	9845749:9845826:9897103:9897236:9900558:9900722,9850630:9850702:9897103:9897236:9900558:9900722,	9897104	9897236	9897184	9897184	Nonsense_Mutation	C	T	p.W255*
SKCM	TCGA-DA-A1I1-06	TRIM31	ENST00000376734.3,ENST00000540829.1	chr6	30078224:30078455:30079424:30079520:30080165:30080252,	30079425	30079520	30079499	30079499	Nonsense_Mutation	G	A	p.Q147*
SKCM	TCGA-DA-A1I1-06	ITGA1	ENST00000504669.1,ENST00000282588.6	chr5	52214561:52214728:52216161:52216298:52218606:52218717,	52216162	52216298	52216260	52216260	Nonsense_Mutation	C	T	p.R752*
SKCM	TCGA-EE-A2MT-06	ENPP2	ENST00000259486.6	chr8	120605991:120606100:120608086:120608242:120612917:120612990,	120608087	120608242	120608182	120608182	Nonsense_Mutation	T	A	p.K345*
SKCM	TCGA-EE-A2MT-06	AMBRA1	ENST00000533727.1,ENST00000314845.3	chr11	46563494:46564531:46564801:46564948:46565524:46565591,	46564802	46564948	46564804	46564804	Nonsense_Mutation	G	A	p.Q255*
SKCM	TCGA-EE-A2MT-06	SELE	ENST00000367774.1,ENST00000367782.4,ENST00000367777.1,ENST00000367776.1,ENST00000333360.7,ENST00000367779.4,ENST00000367781.4	chr1	169698628:169698814:169699572:169699758:169700975:169701083,	169699573	169699758	169699599	169699599	Nonsense_Mutation	C	T	p.W230*
SKCM	TCGA-EE-A2MT-06	UTP20	ENST00000261637.4	chr12	101761637:101761754:101763498:101763669:101764209:101764341,	101763499	101763669	101763530	101763530	Nonsense_Mutation	G	A	p.W2139*
SKCM	TCGA-EE-A2MT-06	CCDC102B	ENST00000360242.5,ENST00000319445.6	chr18	66564455:66564665:66678170:66678341:66721266:66722426,	66678171	66678341	66678186	66678186	Nonsense_Mutation	C	T	p.Q427*
SKCM	TCGA-EE-A2MT-06	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42046634:42046765:42049985:42050037:42052520:42052727,	42049986	42050037	42050032	42050032	Nonsense_Mutation	C	T	p.R2396*
SKCM	TCGA-EE-A2MT-06	KDM4B	ENST00000381759.4	chr19	5110632:5110829:5111385:5111555:5111785:5113351,	5111386	5111555	5111420	5111420	Nonsense_Mutation	C	T	p.Q384*
SKCM	TCGA-EE-A2MT-06	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014234	28014234	Nonsense_Mutation	G	A	p.Q118*
SKCM	TCGA-EE-A2MT-06	SELE	ENST00000367774.1,ENST00000367782.4,ENST00000367777.1,ENST00000367776.1,ENST00000333360.7,ENST00000367779.4,ENST00000367781.4	chr1	169698628:169698814:169699572:169699758:169700975:169701083,	169699573	169699758	169699598	169699598	Nonsense_Mutation	C	T	p.W230*
SKCM	TCGA-EE-A2MT-06	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953760	48953760	Nonsense_Mutation	C	T	p.R455*
SKCM	TCGA-EE-A2MT-06	CDH16	ENST00000394055.3	chr16	66943888:66943996:66944162:66944339:66945084:66945218,	66944163	66944339	66944308	66944308	Nonsense_Mutation	G	T	p.Y674*
SKCM	TCGA-EE-A2MT-06	CDH16	ENST00000568698.1,ENST00000570262.1,ENST00000568632.1,ENST00000299752.4	chr16	66943888:66943996:66944162:66944405:66945084:66945218,	66944163	66944405	66944308	66944308	Nonsense_Mutation	G	T	p.Y674*
SKCM	TCGA-EE-A2MT-06	DRC1	ENST00000288710.2	chr2	26667089:26667224:26667583:26667816:26671558:26671671,	26667584	26667816	26667734	26667734	Nonsense_Mutation	G	A	p.W438*
SKCM	TCGA-ER-A19O-06	CCDC102B	ENST00000360242.5,ENST00000319445.6	chr18	66564455:66564665:66678170:66678341:66721266:66722426,	66678171	66678341	66678264	66678264	Nonsense_Mutation	C	T	p.Q453*
SKCM	TCGA-ER-A19O-06	ELMO1	ENST00000310758.4,ENST00000463390.1	chr7	37355523:37355564:37382216:37382367:37488277:37488459,	37382217	37382367	37382254	37382254	Nonsense_Mutation	C	T	p.W14*
SKCM	TCGA-ER-A19O-06	CHAT	ENST00000466590.2,ENST00000339797.1,ENST00000455728.2,ENST00000351556.3,ENST00000337653.2,ENST00000395559.2,ENST00000395562.2	chr10	50833518:50833699:50835653:50835831:50854550:50854720,	50835654	50835831	50835803	50835803	Nonsense_Mutation	G	A	p.W279*
SKCM	TCGA-EE-A29Q-06	ZC3HAV1	ENST00000464606.1,ENST00000471652.1	chr7	138768525:138768778:138774369:138774505:138793769:138794100,	138774370	138774505	138774396	138774396	Nonsense_Mutation	G	A	p.Q140*
SKCM	TCGA-EE-A29Q-06	EIF4G3	ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21205815:21206013:21212693:21212864:21220009:21220129,	21212694	21212864	21212837	21212837	Nonsense_Mutation	G	A	p.Q711*
SKCM	TCGA-EE-A29Q-06	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17156657:17156706:17158028:17158172:17167214:17167278,	17158029	17158172	17158169	17158169	Nonsense_Mutation	G	A	p.Q570*
SKCM	TCGA-EE-A29Q-06	NEK5	ENST00000465811.3	chr13	52635954:52636089:52639619:52639745:52646079:52646206,	52639620	52639745	52639700	52639700	Nonsense_Mutation	C	T	p.W657*
SKCM	TCGA-EE-A29Q-06	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51686091	51686091	Nonsense_Mutation	G	A	p.R267*
SKCM	TCGA-D3-A5GU-06	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141244203	141244203	Nonsense_Mutation	G	A	p.Q565*
SKCM	TCGA-D3-A5GU-06	ZNF346	ENST00000358149.3,ENST00000503039.1,ENST00000503425.1,ENST00000261948.4	chr5	176468778:176468871:176477751:176477937:176489058:176489152,176471467:176471534:176477751:176477937:176489058:176489152,	176477752	176477937	176477760	176477760	Nonsense_Mutation	C	T	p.Q201*
SKCM	TCGA-D3-A5GU-06	ZNF346	ENST00000511834.1	chr5	176471467:176471534:176477703:176477937:176489058:176489152,	176477704	176477937	176477760	176477760	Nonsense_Mutation	C	T	p.Q201*
SKCM	TCGA-D3-A5GU-06	FGD4	ENST00000534526.2,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000493087.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000531134.1	chr12	32778587:32778713:32786482:32786623:32791588:32791729,	32786483	32786623	32786516	32786516	Nonsense_Mutation	C	T	p.Q599*
SKCM	TCGA-D3-A5GU-06	NMRAL1	ENST00000574425.1,ENST00000404295.3,ENST00000283429.6,ENST00000574733.1	chr16	4516211:4516403:4519227:4519466:4524093:4524167,	4519228	4519466	4519332	4519332	Nonsense_Mutation	G	A	p.Q59*
SKCM	TCGA-D3-A5GU-06	ZNF208	ENST00000601773.1,ENST00000397126.4	chr19	22170017:22170113:22171584:22171711:22193593:22193721,	22171585	22171711	22171661	22171661	Nonsense_Mutation	C	T	p.W18*
SKCM	TCGA-D3-A5GU-06	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91682045:91682272:91690573:91690736:91691587:91691800,	91690574	91690736	91690670	91690670	Nonsense_Mutation	C	T	p.R1912*
SKCM	TCGA-D3-A5GU-06	HGF	ENST00000453411.1,ENST00000457544.2	chr7	81374315:81374436:81381435:81381563:81386504:81386619,	81381436	81381563	81381529	81381529	Nonsense_Mutation	G	A	p.R178*
SKCM	TCGA-D3-A5GU-06	HGF	ENST00000444829.2,ENST00000222390.5	chr7	81374315:81374436:81381435:81381578:81386504:81386619,	81381436	81381578	81381529	81381529	Nonsense_Mutation	G	A	p.R178*
SKCM	TCGA-D3-A5GU-06	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1,ENST00000509731.1	chr5	33462203:33462308:33463857:33463930:33466975:33467022,	33463858	33463930	33463925	33463925	Nonsense_Mutation	C	T	p.Q635*
SKCM	TCGA-D3-A5GU-06	SHCBP1	ENST00000303383.3,ENST00000566016.1	chr16	46637886:46638055:46638139:46638373:46642208:46642301,	46638140	46638373	46638351	46638351	Nonsense_Mutation	G	A	p.R238*
SKCM	TCGA-ER-A2NH-06	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159906543:159906698:159907475:159907628:159912752:159912941,	159907476	159907628	159907562	159907562	Nonsense_Mutation	C	T	p.W105*
SKCM	TCGA-GN-A4U4-06	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157738203:157738491:157739655:157739940:157740198:157740456,	157739656	157739940	157739827	157739827	Nonsense_Mutation	G	A	p.Q142*
SKCM	TCGA-GN-A4U4-06	DPYD	ENST00000370192.3	chr1	97847948:97848017:97915614:97915779:97981281:97981497,	97915615	97915779	97915658	97915658	Nonsense_Mutation	C	T	p.W621*
SKCM	TCGA-GN-A4U4-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120836	12120836	Nonsense_Mutation	C	T	p.Q270*
SKCM	TCGA-GN-A4U4-06	ZNF563	ENST00000595977.1	chr19	12430000:12430125:12430243:12430647:12432085:12432146,	12430244	12430647	12430406	12430406	Nonsense_Mutation	G	A	p.Q145*
SKCM	TCGA-GN-A4U4-06	PRSS16	ENST00000470870.1,ENST00000230582.3	chr6	27215673:27215827:27216625:27216725:27220586:27220728,27215673:27215827:27216625:27216725:27216878:27217008,	27216626	27216725	27216652	27216652	Nonsense_Mutation	G	A	p.W88*
SKCM	TCGA-GN-A4U4-06	NEK5	ENST00000465811.3	chr13	52635954:52636089:52639619:52639745:52646079:52646206,	52639620	52639745	52639699	52639699	Nonsense_Mutation	C	T	p.W657*
SKCM	TCGA-GN-A4U4-06	PLXNC1	ENST00000545312.1,ENST00000258526.4,ENST00000547057.1	chr12	94691091:94691199:94692407:94692571:94694685:94694833,	94692408	94692571	94692559	94692559	Nonsense_Mutation	G	A	p.W1409*
SKCM	TCGA-GN-A4U4-06	RPL5	ENST00000370321.3	chr1	93301746:93301949:93303012:93303190:93306107:93306196,	93303013	93303190	93303020	93303020	Nonsense_Mutation	C	T	p.R179*
SKCM	TCGA-EE-A3JB-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903562	5903562	Nonsense_Mutation	C	T	p.R258*
SKCM	TCGA-EE-A3JB-06	IL1R2	ENST00000457817.1,ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102626183:102626288:102632332:102632513:102636099:102636274,	102632333	102632513	102632511	102632511	Nonsense_Mutation	A	T	p.K171*
SKCM	TCGA-EE-A3JB-06	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50616039	50616039	Nonsense_Mutation	G	C	p.S132*
SKCM	TCGA-EE-A3JB-06	TBC1D1	ENST00000446803.2,ENST00000421339.2,ENST00000261439.4	chr4	38037208:38037319:38051238:38051519:38055819:38055865,38047491:38047524:38051238:38051519:38055819:38055865,	38051239	38051519	38051434	38051434	Nonsense_Mutation	C	T	p.Q609*
SKCM	TCGA-EE-A3JB-06	SPATA17	ENST00000366933.4	chr1	217856599:217856703:217915316:217915440:217947675:217947766,	217915317	217915440	217915408	217915408	Nonsense_Mutation	C	T	p.R163*
SKCM	TCGA-EE-A3JB-06	SPATA17	ENST00000470448.1	chr1	217856599:217856703:217915320:217915440:217947675:217947766,	217915321	217915440	217915408	217915408	Nonsense_Mutation	C	T	p.R163*
SKCM	TCGA-EE-A3JB-06	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42743008	42743008	Nonsense_Mutation	G	A	p.Q465*
SKCM	TCGA-EB-A4OY-01	TRAF3IP1	ENST00000373327.4	chr2	239247002:239247098:239253137:239253239:239256095:239256116,	239253138	239253239	239253162	239253162	Nonsense_Mutation	C	G	p.S395*
SKCM	TCGA-EB-A4OY-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53662807:53663869:53664161:53664266:53664461:53664582,	53664162	53664266	53664186	53664186	Nonsense_Mutation	C	T	p.Q390*
SKCM	TCGA-EB-A4OY-01	HIRIP3	ENST00000563053.1	chr16	30004969:30005129:30005968:30006164:30006423:30006538,	30005969	30006164	30006059	30006059	Nonsense_Mutation	G	C	p.S136*
SKCM	TCGA-EB-A4OY-01	HIRIP3	ENST00000279392.3	chr16	30004969:30005129:30005226:30006164:30006423:30006538,	30005227	30006164	30006059	30006059	Nonsense_Mutation	G	C	p.S136*
SKCM	TCGA-D3-A8GK-06	RPAP1	ENST00000562303.1,ENST00000561631.1,ENST00000304330.4,ENST00000561603.1,ENST00000565035.1	chr15	41816145:41816170:41816293:41816452:41817188:41817346,	41816294	41816452	41816385	41816385	Nonsense_Mutation	G	A	p.Q715*
SKCM	TCGA-D3-A8GK-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61833305	61833305	Nonsense_Mutation	G	T	p.S2445*
SKCM	TCGA-D3-A8GK-06	PARD6G	ENST00000470488.2	chr18	77940738:77941033:77960592:77960815:78005159:78005231,	77960593	77960815	77960800	77960800	Nonsense_Mutation	G	A	p.R30*
SKCM	TCGA-D3-A8GK-06	FUT10	ENST00000524021.1	chr8	33310899:33311028:33318929:33319243:33330581:33330609,	33318930	33319243	33318958	33318958	Nonsense_Mutation	G	A	p.Q5*
SKCM	TCGA-D3-A8GK-06	FUT10	ENST00000416169.1,ENST00000520767.1,ENST00000335589.3	chr8	33310899:33311028:33318889:33319243:33330581:33330609,	33318890	33319243	33318958	33318958	Nonsense_Mutation	G	A	p.Q5*
SKCM	TCGA-D3-A8GK-06	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39802041	39802041	Nonsense_Mutation	C	T	p.Q3261*
SKCM	TCGA-D3-A8GK-06	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158040	27158040	Nonsense_Mutation	G	A	p.W88*
SKCM	TCGA-D3-A8GK-06	FCRL5	ENST00000361835.3,ENST00000368190.3,ENST00000368189.3	chr1	157516002:157516070:157516732:157516987:157519349:157519370,157514620:157514872:157516732:157516987:157519349:157519370,	157516733	157516987	157516948	157516948	Nonsense_Mutation	C	T	p.W31*
SKCM	TCGA-FS-A1ZB-06	TARBP1	ENST00000481183.1,ENST00000040877.1	chr1	234536926:234537008:234541648:234541845:234546190:234546277,	234541649	234541845	234541779	234541779	Nonsense_Mutation	G	A	p.R1287*
SKCM	TCGA-FS-A1ZB-06	GRIA4	ENST00000428631.2,ENST00000525187.1,ENST00000393127.2,ENST00000530497.1,ENST00000393125.2,ENST00000525032.1,ENST00000282499.5	chr11	105483002:105483161:105623706:105623946:105732749:105732934,	105623707	105623946	105623911	105623911	Nonsense_Mutation	G	A	p.W151*
SKCM	TCGA-FS-A1ZB-06	FANCM	ENST00000267430.5,ENST00000556036.1,ENST00000542564.2	chr14	45624575:45624662:45628298:45628483:45633561:45633768,	45628299	45628483	45628328	45628328	Nonsense_Mutation	G	T	p.E476*
SKCM	TCGA-EB-A3XD-01	TP63	ENST00000418709.2,ENST00000320472.5,ENST00000440651.2,ENST00000392460.3,ENST00000264731.3	chr3	189507589:189507631:189526060:189526315:189582020:189582057,189456430:189456563:189526060:189526315:189582020:189582057,	189526061	189526315	189526280	189526280	Nonsense_Mutation	C	T	p.Q182*
SKCM	TCGA-EB-A3XD-01	ATP2A2	ENST00000308664.6,ENST00000539276.2,ENST00000548169.2,ENST00000395494.2,ENST00000377685.5	chr12	110781060:110781239:110782690:110782776:110783053:110783187,	110782691	110782776	110782771	110782771	Nonsense_Mutation	C	T	p.Q841*
SKCM	TCGA-EB-A3XD-01	TAF1B	ENST00000263663.5,ENST00000396242.3,ENST00000469895.1,ENST00000434858.1,ENST00000480197.1,ENST00000402170.1	chr2	9989501:9989589:9991669:9991767:9994454:9994550,	9991670	9991767	9991705	9991705	Nonsense_Mutation	C	T	p.Q81*
SKCM	TCGA-D3-A8GN-06	RSF1	ENST00000440064.2,ENST00000360355.2	chr11	77436617:77436744:77451775:77451981:77458080:77458173,77436617:77436744:77451775:77451981:77475642:77475734,	77451776	77451981	77451794	77451794	Nonsense_Mutation	G	T	p.S187*
SKCM	TCGA-EE-A20F-06	CHST15	ENST00000435907.1,ENST00000346248.5	chr10	125767185:125769855:125771848:125771996:125780771:125780928,	125771849	125771996	125771987	125771987	Nonsense_Mutation	G	A	p.Q453*
SKCM	TCGA-EE-A20F-06	ADPRHL1	ENST00000356501.4,ENST00000375418.3,ENST00000413169.2	chr13	114079366:114079494:114083266:114083407:114088056:114088182,	114083267	114083407	114083342	114083342	Nonsense_Mutation	G	A	p.Q109*
SKCM	TCGA-EE-A20F-06	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224102	51224102	Nonsense_Mutation	G	A	p.R1216*
SKCM	TCGA-EE-A20F-06	MYO5B	ENST00000285039.7	chr18	47516808:47516890:47518657:47518801:47527624:47527781,	47518658	47518801	47518741	47518741	Nonsense_Mutation	G	A	p.Q225*
SKCM	TCGA-WE-A8JZ-06	SLC34A1	ENST00000324417.5,ENST00000512593.1,ENST00000504577.1,ENST00000507685.1	chr5	176812721:176812851:176812987:176813137:176813221:176813291,	176812988	176813137	176813064	176813064	Nonsense_Mutation	C	A	p.C62*
SKCM	TCGA-WE-A8JZ-06	CALCOCO1	ENST00000262059.4,ENST00000550804.1,ENST00000548263.1,ENST00000549935.2	chr12	54108983:54109109:54109576:54109831:54110043:54110199,	54109577	54109831	54109801	54109801	Nonsense_Mutation	G	A	p.R346*
SKCM	TCGA-EE-A182-06	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16328529	16328529	Nonsense_Mutation	G	A	p.Q5*
SKCM	TCGA-EE-A182-06	DPEP1	ENST00000421184.1,ENST00000564281.1,ENST00000261615.4,ENST00000393092.3,ENST00000565249.1	chr16	89702315:89702448:89702671:89702804:89702940:89703055,	89702672	89702804	89702702	89702702	Nonsense_Mutation	C	T	p.Q90*
SKCM	TCGA-EE-A182-06	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016198	167016198	Nonsense_Mutation	G	A	p.Q592*
SKCM	TCGA-EE-A182-06	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38103659:38103859:38104071:38104292:38105331:38105410,	38104072	38104292	38104270	38104270	Nonsense_Mutation	C	T	p.Q358*
SKCM	TCGA-EE-A182-06	INVS	ENST00000541287.1,ENST00000262456.2,ENST00000262457.2	chr9	102991941:102992109:103002341:103002522:103004851:103004961,	103002342	103002522	103002492	103002492	Nonsense_Mutation	C	T	p.R256*
SKCM	TCGA-EE-A182-06	ST7L	ENST00000480988.1,ENST00000497457.1	chr1	113143415:113143470:113153462:113153625:113161530:113161563,	113153463	113153625	113153619	113153619	Nonsense_Mutation	C	A	p.E99*
SKCM	TCGA-EE-A182-06	SSR4	ENST00000460616.1,ENST00000485612.1,ENST00000370087.1,ENST00000370086.3,ENST00000320857.3,ENST00000486204.1,ENST00000471880.1	chrX	153061893:153062007:153062912:153062987:153063179:153063269,	153062913	153062987	153062943	153062943	Nonsense_Mutation	A	T	p.K73*
SKCM	TCGA-EE-A182-06	ZNF563	ENST00000595977.1	chr19	12430000:12430125:12430243:12430647:12432085:12432146,	12430244	12430647	12430286	12430286	Nonsense_Mutation	G	A	p.R185*
SKCM	TCGA-EE-A182-06	SSBP2	ENST00000509053.1,ENST00000515395.1,ENST00000514493.1	chr5	80770314:80770381:80785068:80785128:80809446:80809536,80770314:80770381:80785068:80785128:80911291:80911376,	80785069	80785128	80785071	80785071	Nonsense_Mutation	G	A	p.Q144*
SKCM	TCGA-EE-A182-06	TPM1	ENST00000404484.4,ENST00000317516.7,ENST00000560959.1,ENST00000558868.1,ENST00000334895.5,ENST00000559281.1	chr15	63340698:63340906:63349183:63349317:63351761:63351879,	63349184	63349317	63349295	63349295	Nonsense_Mutation	A	T	p.K160*
SKCM	TCGA-EE-A182-06	IL9R	ENST00000540897.1,ENST00000244174.5,ENST00000424344.3,ENST00000369423.2	chrX	155234113:155234230:155234942:155235144:155235747:155235853,	155234943	155235144	155235098	155235098	Nonsense_Mutation	G	A	p.W224*
SKCM	TCGA-EE-A182-06	SEC24D	ENST00000379735.5	chr4	119736182:119736310:119736605:119736881:119738418:119738567,119736182:119736313:119736605:119736881:119738418:119738567,	119736606	119736881	119736660	119736660	Nonsense_Mutation	G	A	p.Q207*
SKCM	TCGA-EE-A182-06	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1	chr19	55497659:55497683:55501389:55501560:55501869:55502040,	55501390	55501560	55501423	55501423	Nonsense_Mutation	G	A	p.W800*
SKCM	TCGA-EE-A182-06	NLRP2	ENST00000540597.1	chr19	55497659:55497683:55501389:55501761:55501869:55502040,	55501390	55501761	55501423	55501423	Nonsense_Mutation	G	A	p.W800*
SKCM	TCGA-EE-A182-06	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022442	11022442	Nonsense_Mutation	C	T	p.R186*
SKCM	TCGA-EE-A182-06	CYP4F22	ENST00000601005.2,ENST00000269703.3	chr19	15648682:15648804:15651260:15651528:15654781:15654848,	15651261	15651528	15651427	15651427	Nonsense_Mutation	C	T	p.Q280*
SKCM	TCGA-EE-A182-06	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30492118	30492118	Nonsense_Mutation	C	T	p.W305*
SKCM	TCGA-EE-A182-06	NPFFR2	ENST00000358749.3	chr4	72905090:72905130:72994301:72994636:73003756:73003856,	72994302	72994636	72994359	72994359	Nonsense_Mutation	G	A	p.W119*
SKCM	TCGA-EE-A182-06	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000478503.2,ENST00000514152.1	chr4	152065371:152065440:152069073:152069338:152070651:152070713,152065061:152065202:152069073:152069338:152070651:152070713,	152069074	152069338	152069133	152069133	Nonsense_Mutation	G	A	p.Q395*
SKCM	TCGA-EE-A182-06	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266077	41266077	Nonsense_Mutation	G	A	p.W25*
SKCM	TCGA-D3-A3MU-06	SCN2A	ENST00000375427.2,ENST00000357398.3	chr2	166165175:166165304:166165674:166165766:166166832:166167105,	166165675	166165766	166165718	166165718	Nonsense_Mutation	C	T	p.R217*
SKCM	TCGA-D3-A3MU-06	MCMDC2	ENST00000492775.1,ENST00000313616.5,ENST00000422365.2,ENST00000396592.3	chr8	67786287:67786469:67786560:67786691:67786761:67786821,	67786561	67786691	67786587	67786587	Nonsense_Mutation	C	T	p.R41*
SKCM	TCGA-D3-A3MU-06	PMEL	ENST00000360714.4,ENST00000536427.1,ENST00000548493.1	chr12	56355407:56355516:56359719:56359846:56360461:56360493,	56359720	56359846	56359780	56359780	Nonsense_Mutation	T	A	p.K6*
SKCM	TCGA-Z2-AA3S-06	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58490519:58490605:58491540:58491626:58494212:58494237,	58491541	58491626	58491624	58491624	Nonsense_Mutation	T	A	p.K144*
SKCM	TCGA-Z2-AA3S-06	ST7	ENST00000446490.1	chr7	116830887:116830990:116849840:116849991:116869815:116870150,	116849841	116849991	116849985	116849985	Nonsense_Mutation	G	T	p.E467*
SKCM	TCGA-Z2-AA3S-06	PSG11	ENST00000401740.1,ENST00000320078.7	chr19	43522921:43523200:43528842:43529208:43530460:43530618,	43528843	43529208	43529189	43529189	Nonsense_Mutation	C	T	p.W28*
SKCM	TCGA-Z2-AA3S-06	LCK	ENST00000355928.3,ENST00000476457.1,ENST00000495610.2,ENST00000469765.1,ENST00000482949.1	chr1	32716918:32716972:32739925:32740035:32740337:32740419,	32739926	32740035	32739969	32739969	Nonsense_Mutation	G	A	p.W13*
SKCM	TCGA-Z2-AA3S-06	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
SKCM	TCGA-BF-AAP4-01	PPP2R2A	ENST00000521557.1,ENST00000523925.1,ENST00000519439.1,ENST00000315985.7,ENST00000380737.3,ENST00000522535.1,ENST00000523964.1,ENST00000518215.1	chr8	26211983:26212149:26217684:26217797:26218489:26218517,	26217685	26217797	26217704	26217704	Nonsense_Mutation	G	A	p.W122*
SKCM	TCGA-BF-AAP4-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2	chr3	46491345:46491518:46491984:46492163:46495794:46495850,	46491985	46492163	46492006	46492006	Nonsense_Mutation	C	T	p.W287*
SKCM	TCGA-BF-AAP4-01	TUSC3	ENST00000509380.1,ENST00000515859.1,ENST00000510836.1,ENST00000506802.1,ENST00000382020.4,ENST00000503731.1	chr8	15397791:15398077:15480588:15480758:15508205:15508323,	15480589	15480758	15480730	15480730	Nonsense_Mutation	C	T	p.Q94*
SKCM	TCGA-BF-AAP4-01	MRPL46	ENST00000312475.4	chr15	89002838:89003094:89007933:89008107:89010380:89010620,89002838:89003094:89007933:89008107:89008817:89008978,	89007934	89008107	89007970	89007970	Nonsense_Mutation	G	A	p.R185*
SKCM	TCGA-BF-AAP4-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6,ENST00000422127.1	chr1	228479598:228479862:228480223:228480487:228481053:228481317,	228480224	228480487	228480331	228480331	Nonsense_Mutation	A	T	p.K4000*
SKCM	TCGA-BF-AAP4-01	SPDL1	ENST00000265295.4,ENST00000507232.1	chr5	169025479:169025583:169025975:169026163:169028283:169028629,	169025976	169026163	169026091	169026091	Nonsense_Mutation	C	T	p.Q418*
SKCM	TCGA-BF-AAP4-01	ADAM15	ENST00000271836.6,ENST00000368413.1,ENST00000368412.3,ENST00000526491.1,ENST00000355956.2,ENST00000461564.2,ENST00000498481.2,ENST00000531455.1,ENST00000527418.1,ENST00000356955.2,ENST00000360674.4,ENST00000359280.4,ENST00000529473.1,ENST00000368410.2,ENST00000472434.1,ENST00000461234.1,ENST00000449910.2	chr1	155030721:155030917:155031185:155031263:155032377:155032450,	155031186	155031263	155031201	155031201	Nonsense_Mutation	C	T	p.R645*
SKCM	TCGA-BF-AAP4-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525575	75525575	Nonsense_Mutation	C	T	p.Q462*
SKCM	TCGA-BF-AAP4-01	FMNL3	ENST00000293590.5,ENST00000352151.5,ENST00000550488.1,ENST00000335154.5	chr12	50045164:50045233:50045715:50045995:50047008:50047110,	50045716	50045995	50045923	50045923	Nonsense_Mutation	G	A	p.Q466*
SKCM	TCGA-BF-AAP4-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155260043:155260469:155261546:155261728:155262967:155263134,	155261547	155261728	155261590	155261590	Nonsense_Mutation	C	T	p.W494*
SKCM	TCGA-XV-AAZW-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280254	114280254	Nonsense_Mutation	C	T	p.Q3494*
SKCM	TCGA-XV-AAZW-01	CWH43	ENST00000514053.2	chr4	48988329:48988489:48990493:48990685:48993470:48993591,	48990494	48990685	48990633	48990633	Nonsense_Mutation	G	A	p.W61*
SKCM	TCGA-FS-A4F4-06	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204150334:204150455:204154487:204154599:204156984:204157049,	204154488	204154599	204154579	204154579	Nonsense_Mutation	C	T	p.R355*
SKCM	TCGA-FS-A4F4-06	PLA2G7	ENST00000538237.1,ENST00000541026.1,ENST00000274793.7,ENST00000537365.1	chr6	46678281:46678395:46679232:46679356:46680005:46680074,	46679233	46679356	46679259	46679259	Nonsense_Mutation	C	A	p.E213*
SKCM	TCGA-FS-A4FD-06	SLC41A2	ENST00000258538.3	chr12	105280070:105280217:105282810:105282955:105289051:105289123,	105282811	105282955	105282900	105282900	Nonsense_Mutation	C	T	p.W264*
SKCM	TCGA-FS-A4FD-06	DGKI	ENST00000453654.2,ENST00000446122.1,ENST00000424189.2,ENST00000288490.5	chr7	137270006:137270092:137271842:137271956:137282592:137282653,	137271843	137271956	137271863	137271863	Nonsense_Mutation	G	A	p.R169*
SKCM	TCGA-FS-A4FD-06	LAMC3	ENST00000361069.4	chr9	133932315:133932534:133936421:133936610:133942346:133942592,	133936422	133936610	133936604	133936604	Nonsense_Mutation	C	T	p.Q781*
SKCM	TCGA-FS-A4FD-06	SPOCK1	ENST00000394945.1,ENST00000282223.7	chr5	136324241:136324332:136328172:136328289:136403403:136403518,	136328173	136328289	136328179	136328179	Nonsense_Mutation	G	A	p.Q234*
SKCM	TCGA-FS-A4FD-06	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380875.3	chr9	14801649:14801872:14804953:14805150:14806658:14806844,	14804954	14805150	14805142	14805142	Nonsense_Mutation	G	A	p.Q1096*
SKCM	TCGA-GN-A264-06	TSNAXIP1	ENST00000565339.1,ENST00000466164.1,ENST00000487120.1,ENST00000415766.3,ENST00000568990.1,ENST00000388833.3,ENST00000561639.1	chr16	67861151:67861278:67861375:67861482:67861655:67861845,	67861376	67861482	67861433	67861433	Nonsense_Mutation	G	T	p.E563*
SKCM	TCGA-WE-A8ZQ-06	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088756	27088756	Nonsense_Mutation	C	T	p.Q789*
SKCM	TCGA-WE-A8ZQ-06	IRF2	ENST00000512020.1	chr4	185340622:185340722:185350131:185350224:185395532:185395702,	185350132	185350224	185350179	185350179	Nonsense_Mutation	C	A	p.E14*
SKCM	TCGA-EE-A2GO-06	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33331095	33331095	Nonsense_Mutation	G	A	p.Q989*
SKCM	TCGA-EE-A2GO-06	ALB	ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74276096:74276126:74277712:74277842:74279136:74279351,	74277713	74277842	74277825	74277825	Nonsense_Mutation	G	T	p.E276*
SKCM	TCGA-EE-A2GO-06	CDCP1	ENST00000425231.2,ENST00000296129.1	chr3	45151964:45152333:45153574:45153937:45159903:45160110,	45153575	45153937	45153631	45153631	Nonsense_Mutation	C	T	p.W200*
SKCM	TCGA-EE-A2GO-06	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467628:136467801:136473119:136473264:136479493:136479576,	136473120	136473264	136473261	136473261	Nonsense_Mutation	C	T	p.Q925*
SKCM	TCGA-EE-A2GO-06	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31282274:31282405:31283167:31283313:31284685:31284839,	31283168	31283313	31283225	31283225	Nonsense_Mutation	C	T	p.Q206*
SKCM	TCGA-EE-A2GO-06	DENND3	ENST00000520986.1	chr8	142148120:142148236:142160932:142161052:142161717:142161936,	142160933	142161052	142160972	142160972	Nonsense_Mutation	C	T	p.R259*
SKCM	TCGA-EE-A2GO-06	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56205027	56205027	Nonsense_Mutation	T	A	p.R798*
SKCM	TCGA-EE-A2GO-06	PPP2R2A	ENST00000524169.1,ENST00000518890.1,ENST00000315985.7,ENST00000380737.3,ENST00000518215.1	chr8	26220199:26220364:26221236:26221406:26223830:26223922,	26221237	26221406	26221326	26221326	Nonsense_Mutation	C	T	p.R298*
SKCM	TCGA-EE-A2GO-06	DPYD	ENST00000370192.3	chr1	98157276:98157354:98164906:98165103:98187065:98187210,	98164907	98165103	98164965	98164965	Nonsense_Mutation	G	A	p.R208*
SKCM	TCGA-EE-A2GO-06	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539951	187539951	Nonsense_Mutation	G	A	p.R2597*
SKCM	TCGA-EE-A2GO-06	CNRIP1	ENST00000409862.1	chr2	68544288:68544439:68546353:68546598:68546903:68547019,	68546354	68546598	68546484	68546484	Nonsense_Mutation	G	A	p.Q17*
SKCM	TCGA-EE-A2GO-06	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644837	70644837	Nonsense_Mutation	C	T	p.R429*
SKCM	TCGA-EE-A2GO-06	TRAFD1	ENST00000257604.5,ENST00000412615.2	chr12	112578622:112579028:112579892:112580099:112583389:112583466,	112579893	112580099	112579928	112579928	Nonsense_Mutation	C	T	p.Q227*
SKCM	TCGA-EE-A2GO-06	SCD5	ENST00000319540.4	chr4	83557743:83557976:83601859:83602065:83626435:83626566,	83601860	83602065	83602049	83602049	Nonsense_Mutation	C	T	p.W127*
SKCM	TCGA-EE-A2GO-06	SLCO2B1	ENST00000341411.4,ENST00000289575.5	chr11	74862257:74862442:74873699:74873830:74875007:74875057,	74873700	74873830	74873720	74873720	Nonsense_Mutation	C	T	p.Q13*
SKCM	TCGA-EE-A2GO-06	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000538118.1,ENST00000546285.1,ENST00000539282.1	chr12	25031469:25031583:25034234:25034345:25047208:25047370,	25034235	25034345	25034321	25034321	Nonsense_Mutation	G	A	p.R102*
SKCM	TCGA-EE-A2GO-06	CDCP1	ENST00000425231.2,ENST00000296129.1	chr3	45151964:45152333:45153574:45153937:45159903:45160110,	45153575	45153937	45153630	45153630	Nonsense_Mutation	C	T	p.W200*
SKCM	TCGA-EE-A2GO-06	XPNPEP3	ENST00000414396.1,ENST00000357137.4,ENST00000544094.1,ENST00000541156.1	chr22	41266051:41266143:41277773:41278181:41282316:41282519,41265002:41265119:41277773:41278181:41282316:41282519,	41277774	41278181	41277848	41277848	Nonsense_Mutation	G	T	p.E86*
SKCM	TCGA-EE-A2GO-06	GPC3	ENST00000370818.3,ENST00000394299.2,ENST00000543339.1	chrX	132670151:132670321:132730467:132730627:132795757:132795878,	132730468	132730627	132730486	132730486	Nonsense_Mutation	G	A	p.Q519*
SKCM	TCGA-EB-A82B-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000584328.1,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29665042:29665157:29665721:29665823:29667522:29667663,	29665722	29665823	29665757	29665757	Nonsense_Mutation	C	G	p.Y2285*
SKCM	TCGA-D3-A51T-06	TEX26	ENST00000531960.1,ENST00000380473.3	chr13	31531094:31531166:31540358:31540535:31543021:31543183,	31540359	31540535	31540398	31540398	Nonsense_Mutation	G	A	p.W170*
SKCM	TCGA-D3-A51T-06	CACNA2D3	ENST00000474759.1,ENST00000468658.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54661813:54661903:54676154:54676268:54786625:54786704,	54676155	54676268	54676263	54676263	Nonsense_Mutation	C	T	p.R388*
SKCM	TCGA-D3-A51T-06	FAM114A1	ENST00000358869.2,ENST00000515037.1	chr4	38907142:38907256:38907375:38907482:38910212:38910347,	38907376	38907482	38907396	38907396	Nonsense_Mutation	C	T	p.Q191*
SKCM	TCGA-D3-A51T-06	MIB1	ENST00000578646.1,ENST00000261537.6	chr18	19348583:19348713:19353584:19353689:19358063:19358130,	19353585	19353689	19353597	19353597	Nonsense_Mutation	C	T	p.Q182*
SKCM	TCGA-D3-A51T-06	DNAH3	ENST00000261383.3,ENST00000415178.1	chr16	20944475:20944829:20946669:20946807:20947970:20948175,	20946670	20946807	20946802	20946802	Nonsense_Mutation	C	T	p.W3955*
SKCM	TCGA-D3-A51T-06	TMEM54	ENST00000475208.1,ENST00000373463.3,ENST00000329151.5,ENST00000474144.1	chr1	33360446:33360480:33360905:33361040:33361155:33361245,	33360906	33361040	33360931	33360931	Nonsense_Mutation	C	T	p.W190*
SKCM	TCGA-D3-A51T-06	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272452	167272452	Nonsense_Mutation	C	T	p.W315*
SKCM	TCGA-D3-A51T-06	DLGAP3	ENST00000235180.4,ENST00000373347.1	chr1	35333136:35333228:35334205:35334690:35350578:35350664,	35334206	35334690	35334369	35334369	Nonsense_Mutation	C	T	p.W774*
SKCM	TCGA-D3-A1Q9-06	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357602	50357602	Nonsense_Mutation	C	A	p.E447*
SKCM	TCGA-ER-A19M-06	WDPCP	ENST00000409562.3,ENST00000272321.7,ENST00000398544.3,ENST00000409120.1,ENST00000409835.1,ENST00000409199.1,ENST00000417238.1	chr2	63609040:63609229:63631182:63631792:63660878:63661064,	63631183	63631792	63631766	63631766	Nonsense_Mutation	C	T	p.W92*
SKCM	TCGA-ER-A19M-06	ITIH1	ENST00000540715.1,ENST00000542827.1,ENST00000273283.2	chr3	52812962:52813062:52813447:52813610:52814284:52814385,	52813448	52813610	52813518	52813518	Nonsense_Mutation	C	T	p.Q161*
SKCM	TCGA-ER-A19M-06	ITIH1	ENST00000480409.1	chr3	52812962:52813062:52813447:52813893:52814284:52814385,	52813448	52813893	52813518	52813518	Nonsense_Mutation	C	T	p.Q161*
SKCM	TCGA-ER-A19M-06	CNOT10	ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000416457.1	chr3	32754718:32754861:32757716:32757803:32758645:32758729,	32757717	32757803	32757801	32757801	Nonsense_Mutation	C	T	p.Q220*
SKCM	TCGA-ER-A19M-06	TRAF5	ENST00000336184.2,ENST00000261464.5,ENST00000367004.3	chr1	211534429:211534504:211538717:211538810:211542793:211542934,	211538718	211538810	211538796	211538796	Nonsense_Mutation	C	T	p.Q259*
SKCM	TCGA-ER-A19M-06	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720321	3720321	Nonsense_Mutation	G	A	p.Q1334*
SKCM	TCGA-ER-A19M-06	EIF4G3	ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21205815:21206013:21212693:21212864:21220009:21220129,	21212694	21212864	21212828	21212828	Nonsense_Mutation	G	A	p.Q714*
SKCM	TCGA-EE-A2M7-06	RTKN	ENST00000272430.5,ENST00000305557.5,ENST00000233330.6	chr2	74654295:74654400:74654550:74654719:74655394:74655435,	74654551	74654719	74654713	74654713	Nonsense_Mutation	G	A	p.R352*
SKCM	TCGA-YD-A89C-06	FAAH2	ENST00000374900.4	chrX	57358030:57358240:57367703:57367823:57405083:57405219,	57367704	57367823	57367775	57367775	Nonsense_Mutation	C	T	p.R232*
SKCM	TCGA-YD-A89C-06	PLA2G7	ENST00000274793.7,ENST00000537365.1	chr6	46675727:46675898:46677063:46677155:46678281:46678395,	46677064	46677155	46677074	46677074	Nonsense_Mutation	G	A	p.Q287*
SKCM	TCGA-YD-A89C-06	WDR70	ENST00000511906.1,ENST00000504564.1,ENST00000265107.4	chr5	37438023:37438083:37443340:37443474:37479935:37480089,	37443341	37443474	37443452	37443452	Nonsense_Mutation	C	T	p.R222*
SKCM	TCGA-YD-A89C-06	ADH7	ENST00000437033.2,ENST00000482593.1,ENST00000476959.1,ENST00000209665.4	chr4	100336634:100336773:100340142:100340278:100341689:100341950,	100340143	100340278	100340163	100340163	Nonsense_Mutation	C	T	p.W314*
SKCM	TCGA-YD-A89C-06	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147806823	147806823	Nonsense_Mutation	C	T	p.Q656*
SKCM	TCGA-YD-A89C-06	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147806823	147806823	Nonsense_Mutation	C	T	p.Q656*
SKCM	TCGA-YD-A89C-06	DENND3	ENST00000517813.1,ENST00000424248.1,ENST00000523308.1,ENST00000519811.1,ENST00000262585.2,ENST00000518668.1	chr8	142199084:142199245:142200382:142200516:142202429:142202548,	142200383	142200516	142200441	142200441	Nonsense_Mutation	C	T	p.Q1102*
SKCM	TCGA-YD-A89C-06	ARHGEF37	ENST00000333677.6	chr5	148980670:148980794:148989110:148989258:148996129:148996329,	148989111	148989258	148989236	148989236	Nonsense_Mutation	C	T	p.Q146*
SKCM	TCGA-YD-A89C-06	DBT	ENST00000370131.3,ENST00000370132.4	chr1	100684181:100684303:100696288:100696470:100700991:100701067,	100696289	100696470	100696418	100696418	Nonsense_Mutation	G	A	p.Q102*
SKCM	TCGA-YD-A89C-06	EPS8L2	ENST00000530452.2	chr11	721284:721352:721564:721691:722400:722500,	721565	721691	721599	721599	Nonsense_Mutation	G	A	p.W268*
SKCM	TCGA-YD-A89C-06	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000350198.4,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102504239:102504399:102505257:102505397:102507627:102507783,	102505258	102505397	102505311	102505311	Nonsense_Mutation	C	T	p.R1099*
SKCM	TCGA-YD-A89C-06	TJP3	ENST00000589378.1,ENST00000539908.2,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9	chr19	3738552:3738661:3738894:3739132:3740549:3740761,	3738895	3739132	3738902	3738902	Nonsense_Mutation	G	A	p.W467*
SKCM	TCGA-YD-A89C-06	TBC1D9	ENST00000442267.2	chr4	141549453:141549519:141555101:141555342:141560239:141560308,	141555102	141555342	141555206	141555206	Nonsense_Mutation	C	T	p.W881*
SKCM	TCGA-YD-A89C-06	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61414210	61414210	Nonsense_Mutation	G	A	p.Q192*
SKCM	TCGA-YD-A89C-06	DNASE1L3	ENST00000394549.2,ENST00000483681.1,ENST00000461914.3,ENST00000318316.3	chr3	58186796:58186836:58190495:58190608:58193944:58194033,58186796:58186836:58190495:58190608:58191197:58191278,	58190496	58190608	58190562	58190562	Nonsense_Mutation	G	A	p.Q123*
SKCM	TCGA-YD-A89C-06	GCSAML	ENST00000526896.1	chr1	247690241:247690356:247712437:247712522:247719708:247719768,	247712438	247712522	247712496	247712496	Nonsense_Mutation	G	A	p.W122*
SKCM	TCGA-YD-A89C-06	GCSAML	ENST00000366489.1	chr1	247690241:247690356:247712346:247712522:247726891:247726941,	247712347	247712522	247712496	247712496	Nonsense_Mutation	G	A	p.W122*
SKCM	TCGA-YD-A89C-06	PIEZO2	ENST00000538948.1,ENST00000285141.4,ENST00000503781.3,ENST00000579151.1,ENST00000580640.1,ENST00000582913.1,ENST00000302079.6	chr18	10677743:10677872:10680195:10680368:10681657:10681725,	10680196	10680368	10680289	10680289	Nonsense_Mutation	C	T	p.W2444*
SKCM	TCGA-YD-A89C-06	SLC51A	ENST00000475672.1,ENST00000484407.1,ENST00000296327.5	chr3	195955679:195955791:195956785:195956932:195959289:195959395,	195956786	195956932	195956812	195956812	Nonsense_Mutation	G	A	p.W220*
SKCM	TCGA-YD-A89C-06	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027214	40027214	Nonsense_Mutation	C	T	p.R410*
SKCM	TCGA-YD-A89C-06	DNAJA4	ENST00000423642.1	chr15	78557098:78557237:78562838:78563019:78565436:78565541,78557098:78557237:78562838:78563019:78565441:78565541,	78562839	78563019	78562854	78562854	Nonsense_Mutation	C	T	p.Q79*
SKCM	TCGA-YD-A89C-06	ANKRD28	ENST00000451422.1	chr3	15776916:15777004:15778539:15778740:15793256:15793327,15776916:15777004:15778539:15778740:15807740:15807819,	15778540	15778740	15778590	15778590	Nonsense_Mutation	G	A	p.R138*
SKCM	TCGA-YD-A89C-06	MED30	ENST00000297347.3	chr8	118540889:118541048:118542961:118543066:118552121:118552217,	118542962	118543066	118543034	118543034	Nonsense_Mutation	G	T	p.E137*
SKCM	TCGA-YD-A89C-06	LRRIQ1	ENST00000528777.3,ENST00000393217.2	chr12	85623294:85623427:85626473:85626534:85638566:85638687,	85626474	85626534	85626526	85626526	Nonsense_Mutation	C	T	p.Q1670*
SKCM	TCGA-YD-A89C-06	TTC17	ENST00000299240.6,ENST00000525029.1,ENST00000039989.4,ENST00000526774.1	chr11	43419582:43419663:43421437:43421598:43422995:43423108,	43421438	43421598	43421445	43421445	Nonsense_Mutation	C	T	p.Q356*
SKCM	TCGA-YD-A89C-06	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507060	74507060	Nonsense_Mutation	G	A	p.Q519*
SKCM	TCGA-YD-A89C-06	ELF5	ENST00000312319.2,ENST00000257832.2	chr11	34511555:34511606:34515025:34515259:34527175:34527300,	34515026	34515259	34515044	34515044	Nonsense_Mutation	G	A	p.Q123*
SKCM	TCGA-D3-A1Q8-06	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121761046:121761226:121767663:121767777,121758562:121759434:121761046:121761226:121767663:121767777,	121761047	121761226	121761093	121761093	Nonsense_Mutation	G	A	p.W59*
SKCM	TCGA-D3-A1Q8-06	MAG	ENST00000537831.2,ENST00000361922.4,ENST00000392213.3,ENST00000593348.1	chr19	35800776:35801064:35801449:35801546:35802820:35802912,	35801450	35801546	35801452	35801452	Nonsense_Mutation	C	T	p.R508*
SKCM	TCGA-DA-A1I8-06	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000342992.6,ENST00000460472.2	chr2	179390715:179392034:179392172:179392475:179393000:179393154,	179392173	179392475	179392293	179392293	Nonsense_Mutation	G	A	p.Q35854*
SKCM	TCGA-DA-A1I8-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903556	5903556	Nonsense_Mutation	C	T	p.Q256*
SKCM	TCGA-DA-A1I8-06	EIF2D	ENST00000367114.3,ENST00000468891.1,ENST00000484492.1,ENST00000271764.2	chr1	206769066:206769187:206770449:206770545:206772356:206772446,	206770450	206770545	206770467	206770467	Nonsense_Mutation	C	T	p.W457*
SKCM	TCGA-BF-AAP2-01	HHIPL2	ENST00000343410.6	chr1	222715353:222715497:222716878:222717531:222721065:222721445,	222716879	222717531	222717052	222717052	Nonsense_Mutation	C	T	p.W267*
SKCM	TCGA-BF-AAP2-01	MAGI3	ENST00000486456.1,ENST00000369615.1,ENST00000307546.9,ENST00000369611.4	chr1	113933882:113933971:114092136:114092253:114123163:114123283,	114092137	114092253	114092178	114092178	Nonsense_Mutation	C	T	p.Q120*
SKCM	TCGA-BF-AAP2-01	SUPT20H	ENST00000470359.2,ENST00000476109.1	chr13	37618214:37618318:37619383:37619510:37621671:37621738,37618214:37618318:37619383:37619510:37621482:37621545,	37619384	37619510	37619423	37619423	Nonsense_Mutation	C	A	p.E86*
SKCM	TCGA-BF-AAP2-01	SUPT20H	ENST00000356185.3,ENST00000360252.4,ENST00000497318.1,ENST00000493537.1,ENST00000464744.1	chr13	37618214:37618318:37619383:37619513:37621671:37621738,	37619384	37619513	37619423	37619423	Nonsense_Mutation	C	A	p.E86*
SKCM	TCGA-BF-AAP2-01	RPH3AL	ENST00000323434.8,ENST00000536489.2	chr17	69487:69527:96901:97076:131558:131645,69487:69527:96901:97076:169210:169271,	96902	97076	97004	97004	Nonsense_Mutation	G	A	p.R142*
SKCM	TCGA-BF-AAP2-01	PTPRB	ENST00000551525.1,ENST00000548122.1,ENST00000538708.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70965603:70965867:70970161:70970425:70974815:70975082,	70970162	70970425	70970294	70970294	Nonsense_Mutation	G	A	p.Q904*
SKCM	TCGA-BF-AAP2-01	ANGPTL1	ENST00000234816.2,ENST00000367629.1	chr1	178821817:178822088:178822728:178822922:178834088:178834937,	178822729	178822922	178822782	178822782	Nonsense_Mutation	G	A	p.Q322*
SKCM	TCGA-BF-AAP2-01	WSB2	ENST00000537945.1,ENST00000535496.1,ENST00000315436.3,ENST00000441406.2,ENST00000540129.1	chr12	118476092:118476193:118480645:118480777:118480937:118481041,	118480646	118480777	118480748	118480748	Nonsense_Mutation	G	A	p.Q153*
SKCM	TCGA-BF-AAP2-01	SPI1	ENST00000533968.1	chr11	47381403:47381591:47397183:47397280:47399859:47399942,	47397184	47397280	47397241	47397241	Nonsense_Mutation	G	A	p.Q29*
SKCM	TCGA-BF-AAP2-01	SPI1	ENST00000227163.4	chr11	47381403:47381591:47397183:47397283:47399859:47399942,	47397184	47397283	47397241	47397241	Nonsense_Mutation	G	A	p.Q29*
SKCM	TCGA-BF-AAP2-01	ADAP2	ENST00000580526.1	chr17	29248934:29249126:29249957:29250088:29258906:29258986,	29249958	29250088	29249967	29249967	Nonsense_Mutation	G	A	p.W35*
SKCM	TCGA-BF-AAP2-01	VGLL3	ENST00000398399.2	chr3	86987118:86996217:87017739:87018273:87027675:87027793,	87017740	87018273	87018225	87018225	Nonsense_Mutation	C	T	p.W151*
SKCM	TCGA-BF-AAP2-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944321:139944441:139944735:139944990:139945353:139945503,	139944736	139944990	139944968	139944968	Nonsense_Mutation	C	T	p.W266*
SKCM	TCGA-BF-AAP2-01	ATAD3C	ENST00000378785.2	chr1	1387744:1387814:1389724:1389880:1390839:1390899,	1389725	1389880	1389878	1389878	Nonsense_Mutation	C	T	p.Q126*
SKCM	TCGA-BF-AAP2-01	GLE1	ENST00000372770.4,ENST00000539582.1	chr9	131267084:131267183:131271154:131271376:131277807:131277918,	131271155	131271376	131271296	131271296	Nonsense_Mutation	C	T	p.Q81*
SKCM	TCGA-BF-AAP2-01	PON1	ENST00000433729.1,ENST00000222381.3,ENST00000542556.1	chr7	94928225:94928414:94931516:94931645:94935596:94935678,	94931517	94931645	94931583	94931583	Nonsense_Mutation	C	T	p.W281*
SKCM	TCGA-BF-AAP2-01	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324454	158324454	Nonsense_Mutation	C	T	p.Q116*
SKCM	TCGA-BF-AAP2-01	GMFG	ENST00000595636.1,ENST00000594700.1,ENST00000597595.1,ENST00000598034.1	chr19	39823716:39823766:39826074:39826171:39826613:39826645,39825900:39825950:39826074:39826171:39826613:39826645,	39826075	39826171	39826105	39826105	Nonsense_Mutation	G	A	p.R24*
SKCM	TCGA-BF-AAP2-01	GMFG	ENST00000253054.8	chr19	39825900:39825950:39826074:39826194:39826613:39826645,	39826075	39826194	39826105	39826105	Nonsense_Mutation	G	A	p.R24*
SKCM	TCGA-EE-A180-06	OXSR1	ENST00000467900.1,ENST00000311806.3,ENST00000446845.1	chr3	38278329:38278452:38284233:38284269:38287565:38287712,	38284234	38284269	38284240	38284240	Nonsense_Mutation	C	T	p.R361*
SKCM	TCGA-DA-A1I4-06	SFTA3	ENST00000418548.3	chr14	36943953:36944078:36960405:36960496:36982316:36982375,36946223:36946308:36960405:36960496:36982316:36982375,	36960406	36960496	36960451	36960451	Nonsense_Mutation	G	A	p.Q30*
SKCM	TCGA-DA-A1I4-06	SUPT16H	ENST00000216297.2,ENST00000557394.1	chr14	21819637:21820977:21821646:21821724:21821861:21821991,	21821647	21821724	21821653	21821653	Nonsense_Mutation	G	A	p.R998*
SKCM	TCGA-DA-A1I4-06	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883447	145883447	Nonsense_Mutation	C	T	p.R870*
SKCM	TCGA-DA-A1I4-06	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214556992	214556992	Nonsense_Mutation	G	A	p.Q736*
SKCM	TCGA-DA-A1I4-06	VPS39	ENST00000348544.4,ENST00000318006.5	chr15	42481311:42481406:42483322:42483365:42483693:42483758,	42483323	42483365	42483350	42483350	Nonsense_Mutation	G	A	p.Q74*
SKCM	TCGA-DA-A1HW-06	NFASC	ENST00000367169.4,ENST00000504476.1,ENST00000338515.6,ENST00000367170.4,ENST00000367173.3,ENST00000401399.1,ENST00000430393.1,ENST00000367172.4,ENST00000404977.2,ENST00000338586.6,ENST00000339876.6	chr1	204945798:204945923:204946808:204946853:204948095:204948197,	204946809	204946853	204946814	204946814	Nonsense_Mutation	C	T	p.Q613*
SKCM	TCGA-DA-A1HW-06	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1,ENST00000523085.1	chr8	51306772:51306825:51314769:51314904:51351102:51351159,	51314770	51314904	51314860	51314860	Nonsense_Mutation	G	T	p.E40*
SKCM	TCGA-DA-A1HW-06	DDX24	ENST00000555054.1,ENST00000544005.1,ENST00000330836.5	chr14	94519343:94519473:94521341:94521530:94524167:94524243,	94521342	94521530	94521401	94521401	Nonsense_Mutation	T	A	p.K707*
SKCM	TCGA-DA-A1HW-06	PZP	ENST00000381997.2,ENST00000535230.1,ENST00000261336.2	chr12	9307211:9307435:9309770:9309951:9310362:9310437,	9309771	9309951	9309907	9309907	Nonsense_Mutation	C	T	p.W1138*
SKCM	TCGA-EB-A6QZ-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10093063:10093150:10094153:10094346:10096027:10096201,	10094154	10094346	10094257	10094257	Nonsense_Mutation	A	T	p.R673*
SKCM	TCGA-EB-A6QZ-01	CHRNA9	ENST00000310169.2	chr4	40339302:40339381:40350898:40351431:40355995:40356111,	40350899	40351431	40351137	40351137	Nonsense_Mutation	G	T	p.E202*
SKCM	TCGA-EB-A6QZ-01	IGSF5	ENST00000380588.4	chr21	41151016:41151232:41160093:41160115:41163934:41164026,	41160094	41160115	41160105	41160105	Nonsense_Mutation	C	T	p.Q316*
SKCM	TCGA-YD-A9TB-06	IL1R1	ENST00000409929.1,ENST00000424272.1,ENST00000428279.1,ENST00000410023.1,ENST00000430171.1,ENST00000409329.1,ENST00000409288.1,ENST00000233946.3	chr2	102781233:102781468:102781574:102781764:102782572:102782719,	102781575	102781764	102781666	102781666	Nonsense_Mutation	C	T	p.Q130*
SKCM	TCGA-W3-AA1Q-06	ZC3HC1	ENST00000311873.5,ENST00000467642.1,ENST00000481503.1,ENST00000358303.4	chr7	129662158:129662365:129663350:129663563:129664102:129664217,	129663351	129663563	129663446	129663446	Nonsense_Mutation	G	A	p.R380*
SKCM	TCGA-W3-AA1Q-06	TP53AIP1	ENST00000527504.1	chr11	128806432:128806544:128806656:128807729:128812688:128812822,	128806657	128807729	128807677	128807677	Nonsense_Mutation	G	A	p.Q13*
SKCM	TCGA-W3-AA1Q-06	TP53AIP1	ENST00000531399.1	chr11	128806432:128806544:128807572:128807789:128812688:128812822,	128807573	128807789	128807677	128807677	Nonsense_Mutation	G	A	p.Q13*
SKCM	TCGA-W3-AA1Q-06	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142223980:142224145:142226772:142226951:142231101:142231312,	142226773	142226951	142226892	142226892	Nonsense_Mutation	G	A	p.Q1638*
SKCM	TCGA-W3-AA1Q-06	DYNC1I1	ENST00000359388.4,ENST00000324972.6,ENST00000437599.1,ENST00000457059.1,ENST00000447467.2,ENST00000537881.1	chr7	95625259:95625385:95657486:95657633:95661978:95662092,	95657487	95657633	95657570	95657570	Nonsense_Mutation	G	A	p.W368*
SKCM	TCGA-W3-AA1Q-06	IL7R	ENST00000509668.1,ENST00000303115.3	chr5	35873635:35873750:35874550:35874644:35875613:35875623,	35874551	35874644	35874636	35874636	Nonsense_Mutation	G	A	p.W264*
SKCM	TCGA-W3-AA1Q-06	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436784	16436784	Nonsense_Mutation	G	A	p.R470*
SKCM	TCGA-EE-A2A0-06	SERPINA10	ENST00000261994.4	chr14	94754622:94754896:94756212:94756980:94759525:94759608,	94756213	94756980	94756564	94756564	Nonsense_Mutation	G	A	p.Q163*
SKCM	TCGA-EE-A2A0-06	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828152	121828152	Nonsense_Mutation	G	A	p.W248*
SKCM	TCGA-EE-A2A0-06	LMBR1	ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156476253:156476857:156480723:156480885:156516805:156516872,	156480724	156480885	156480769	156480769	Nonsense_Mutation	G	A	p.R448*
SKCM	TCGA-EB-A6QY-01	ATP6V0E2	ENST00000490092.1,ENST00000456496.2,ENST00000495408.1,ENST00000483478.1,ENST00000425642.2	chr7	149572686:149572734:149575766:149575879:149576423:149576446,	149575767	149575879	149575854	149575854	Nonsense_Mutation	G	A	p.W129*
SKCM	TCGA-EB-A6QY-01	CAD	ENST00000264705.4	chr2	27448572:27448794:27448998:27449187:27449392:27449517,	27448999	27449187	27449086	27449086	Nonsense_Mutation	G	T	p.E644*
SKCM	TCGA-EB-A6QY-01	NGEF	ENST00000373552.4,ENST00000539537.1,ENST00000416114.1,ENST00000264051.3	chr2	233752742:233752817:233756067:233756197:233757607:233757760,	233756068	233756197	233756082	233756082	Nonsense_Mutation	T	A	p.K420*
SKCM	TCGA-EB-A6QY-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5385192:5385441:5391449:5391725:5396546:5396907,	5391450	5391725	5391507	5391507	Nonsense_Mutation	G	A	p.R1805*
SKCM	TCGA-EB-A6QY-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301532	18301532	Nonsense_Mutation	G	A	p.Q1299*
SKCM	TCGA-BF-A5EO-01	ABCF1	ENST00000475993.1	chr6	30558082:30558155:30558311:30558938:30564345:30564956,	30558312	30558938	30558470	30558470	Nonsense_Mutation	C	T	p.R844*
SKCM	TCGA-BF-A5EO-01	L1CAM	ENST00000370055.1,ENST00000543994.1,ENST00000361981.3,ENST00000370060.1,ENST00000361699.4,ENST00000538883.1,ENST00000370057.3	chrX	153130753:153130955:153131158:153131274:153132103:153132326,	153131159	153131274	153131188	153131188	Nonsense_Mutation	G	A	p.Q840*
SKCM	TCGA-BF-A5EO-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749577	33749577	Nonsense_Mutation	A	T	p.Y157*
SKCM	TCGA-BF-A5EO-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185190980:185191168:185200708:185200840:185240454:185240521,	185200709	185200840	185200722	185200722	Nonsense_Mutation	C	T	p.Q775*
SKCM	TCGA-BF-A5EO-01	HSD17B14	ENST00000263278.4,ENST00000599157.1	chr19	49316365:49316605:49316712:49316809:49316919:49316987,	49316713	49316809	49316733	49316733	Nonsense_Mutation	G	A	p.R207*
SKCM	TCGA-BF-A5EO-01	HSD17B14	ENST00000596349.1	chr19	49316365:49316605:49316689:49316809:49316919:49316987,	49316690	49316809	49316733	49316733	Nonsense_Mutation	G	A	p.R207*
SKCM	TCGA-BF-A5EO-01	DNAH5	ENST00000265104.4	chr5	13716595:13716799:13717423:13717629:13718990:13719210,	13717424	13717629	13717512	13717512	Nonsense_Mutation	C	T	p.W4206*
SKCM	TCGA-BF-A5EO-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29362337:29362435:29365765:29365938:29379615:29379824,	29365766	29365938	29365824	29365824	Nonsense_Mutation	C	T	p.R508*
SKCM	TCGA-BF-A5EO-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411902:116412043:116414934:116415165:116417442:116417523,	116414935	116415165	116414955	116414955	Nonsense_Mutation	C	T	p.Q1017*
SKCM	TCGA-BF-A5EO-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390888	197390888	Nonsense_Mutation	C	T	p.Q25*
SKCM	TCGA-BF-A5EO-01	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185232197:185232309:185234854:185234950:185236929:185237097,	185234855	185234950	185234931	185234931	Nonsense_Mutation	C	T	p.W302*
SKCM	TCGA-BF-A5EO-01	GABRB2	ENST00000393959.1,ENST00000274547.2	chr5	160720904:160721435:160753374:160753488:160757889:160758134,	160753375	160753488	160753449	160753449	Nonsense_Mutation	G	A	p.R373*
SKCM	TCGA-EE-A29E-06	STX6	ENST00000258301.5	chr1	180959119:180959245:180962498:180962561:180991774:180992005,180959119:180959245:180962498:180962561:180971741:180971836,	180962499	180962561	180962549	180962549	Nonsense_Mutation	G	A	p.Q105*
SKCM	TCGA-EE-A29E-06	MFF	ENST00000409616.1,ENST00000349901.7	chr2	228197134:228197304:228205007:228205096:228211941:228211990,228197134:228197304:228205007:228205096:228220392:228220477,228197134:228197304:228205007:228205096:228217229:228217289,	228205008	228205096	228205011	228205011	Nonsense_Mutation	C	T	p.R145*
SKCM	TCGA-EE-A29E-06	TECPR2	ENST00000359520.7,ENST00000561099.1	chr14	102963315:102963457:102963906:102964056:102964439:102964561,	102963907	102964056	102964022	102964022	Nonsense_Mutation	G	A	p.W1349*
SKCM	TCGA-EE-A29E-06	TRPC1	ENST00000476941.1,ENST00000273482.6	chr3	142467099:142467302:142496473:142496605:142499675:142499871,	142496474	142496605	142496493	142496493	Nonsense_Mutation	C	T	p.R184*
SKCM	TCGA-EE-A29E-06	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77300442:77300557:77303762:77303873:77304814:77304891,	77303763	77303873	77303806	77303806	Nonsense_Mutation	G	A	p.R291*
SKCM	TCGA-EE-A29E-06	VSNL1	ENST00000295156.4	chr2	17721973:17722185:17773336:17773503:17830676:17830827,	17773337	17773503	17773486	17773486	Nonsense_Mutation	C	T	p.Q49*
SKCM	TCGA-EE-A29E-06	TTC39A	ENST00000371750.5,ENST00000431927.1,ENST00000413473.2,ENST00000371747.3,ENST00000262675.7,ENST00000447632.2,ENST00000451380.1	chr1	51761750:51761842:51767243:51767405:51768028:51768088,	51767244	51767405	51767299	51767299	Nonsense_Mutation	C	T	p.W369*
SKCM	TCGA-EE-A29E-06	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170343468:170343588:170345716:170345863:170346444:170346617,	170345717	170345863	170345783	170345783	Nonsense_Mutation	C	T	p.Q341*
SKCM	TCGA-EE-A29E-06	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1,ENST00000542215.1	chrX	41203282:41203381:41203491:41203652:41204432:41204577,	41203492	41203652	41203558	41203558	Nonsense_Mutation	C	T	p.R311*
SKCM	TCGA-EE-A29E-06	GABPB2	ENST00000368917.1,ENST00000368918.3,ENST00000462520.1,ENST00000368916.1	chr1	151060945:151060993:151062881:151063049:151065667:151065862,151060665:151060773:151062881:151063049:151065667:151065862,	151062882	151063049	151062912	151062912	Nonsense_Mutation	C	T	p.Q47*
SKCM	TCGA-EE-A29E-06	WDR49	ENST00000493061.1	chr3	167240119:167240272:167246839:167247027:167248902:167248977,	167246840	167247027	167246850	167246850	Nonsense_Mutation	C	T	p.W447*
SKCM	TCGA-EE-A29E-06	WLS	ENST00000370976.3,ENST00000262348.4	chr1	68564155:68564436:68603462:68603616:68610251:68610335,68591656:68592018:68603462:68603616:68610251:68610335,	68603463	68603616	68603577	68603577	Nonsense_Mutation	G	A	p.Q468*
SKCM	TCGA-EE-A29E-06	OSGEPL1	ENST00000264151.5	chr2	190611385:190611894:190615275:190615382:190617378:190617450,	190615276	190615382	190615320	190615320	Nonsense_Mutation	A	T	p.L410*
SKCM	TCGA-EE-A29E-06	RDH13	ENST00000592573.1,ENST00000415061.3,ENST00000291892.6,ENST00000396247.3	chr19	55560026:55560131:55568020:55568176:55570524:55570542,	55568021	55568176	55568048	55568048	Nonsense_Mutation	G	A	p.R34*
SKCM	TCGA-EE-A29E-06	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905*
SKCM	TCGA-EE-A29E-06	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905*
SKCM	TCGA-EE-A29E-06	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91731944	91731944	Nonsense_Mutation	C	T	p.R3716*
SKCM	TCGA-EE-A29E-06	RNF170	ENST00000319073.4,ENST00000240159.4	chr8	42720608:42720632:42725146:42725255:42729073:42729149,42716887:42716998:42725146:42725255:42729073:42729149,	42725147	42725255	42725192	42725192	Nonsense_Mutation	G	A	p.Q93*
SKCM	TCGA-EE-A29E-06	SMOC1	ENST00000361956.3,ENST00000381280.4	chr14	70459133:70459190:70461116:70461197:70477470:70477663,	70461117	70461197	70461138	70461138	Nonsense_Mutation	G	A	p.W202*
SKCM	TCGA-EE-A29E-06	SLC39A10	ENST00000465851.1,ENST00000444421.1,ENST00000409086.3,ENST00000541054.1,ENST00000430412.1,ENST00000359634.5	chr2	196545616:196545774:196548422:196548630:196571339:196571400,	196548423	196548630	196548522	196548522	Nonsense_Mutation	C	T	p.Q370*
SKCM	TCGA-EE-A29E-06	TMCO4	ENST00000496528.1,ENST00000488449.1,ENST00000294543.6,ENST00000375122.2,ENST00000375127.1	chr1	20097838:20097975:20107072:20107259:20113518:20113610,	20107073	20107259	20107098	20107098	Nonsense_Mutation	G	A	p.Q52*
SKCM	TCGA-EE-A29E-06	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864297	129864297	Nonsense_Mutation	G	A	p.Q496*
SKCM	TCGA-EE-A29E-06	RNF175	ENST00000513656.1	chr4	154644551:154644610:154649358:154649513:154666820:154666879,154644551:154644610:154649358:154649513:154680948:154681025,154644551:154644610:154649358:154649513:154669796:154669901,154644551:154644610:154649358:154649513:154672589:154672599,	154649359	154649513	154649452	154649452	Nonsense_Mutation	C	T	p.W103*
SKCM	TCGA-EE-A29E-06	MYCT1	ENST00000532295.1	chr6	153019095:153019233:153042876:153043388:153043897:153044419,	153042877	153043388	153043113	153043113	Nonsense_Mutation	C	T	p.Q145*
SKCM	TCGA-EE-A29E-06	TUSC3	ENST00000509380.1,ENST00000507400.1,ENST00000515859.1,ENST00000510836.1,ENST00000506802.1,ENST00000511783.2,ENST00000382020.4,ENST00000503731.1	chr8	15480588:15480758:15508205:15508323:15517015:15517156,	15508206	15508323	15508318	15508318	Nonsense_Mutation	C	T	p.Q141*
SKCM	TCGA-EE-A29E-06	JDP2	ENST00000267569.5,ENST00000437176.1,ENST00000559060.1,ENST00000419727.2,ENST00000435893.2	chr14	75904600:75904824:75928128:75928233:75935992:75936087,	75928129	75928233	75928189	75928189	Nonsense_Mutation	C	T	p.R88*
SKCM	TCGA-EE-A29E-06	AOAH	ENST00000535891.1,ENST00000487014.1,ENST00000480201.1,ENST00000495942.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36589044:36589081:36616179:36616262:36633944:36634036,	36616180	36616262	36616230	36616230	Nonsense_Mutation	C	T	p.W324*
SKCM	TCGA-EE-A29E-06	DCN	ENST00000052754.5,ENST00000393155.1,ENST00000552962.1	chr12	91550851:91550965:91552072:91552286:91558381:91558494,	91552073	91552286	91552088	91552088	Nonsense_Mutation	G	A	p.Q175*
SKCM	TCGA-FS-A1Z4-06	OSMR	ENST00000274276.3,ENST00000502536.1	chr5	38876302:38876475:38881694:38881866:38883928:38884213,	38881695	38881866	38881844	38881844	Nonsense_Mutation	G	A	p.W132*
SKCM	TCGA-EE-A2MJ-06	MYO1D	ENST00000394649.4,ENST00000318217.5,ENST00000577352.1	chr17	30821736:30821933:30932104:30932259:30965739:30965853,	30932105	30932259	30932226	30932226	Nonsense_Mutation	G	A	p.Q915*
SKCM	TCGA-EE-A2MJ-06	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072848	197072848	Nonsense_Mutation	G	A	p.Q1845*
SKCM	TCGA-EE-A2MJ-06	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159906543:159906698:159907475:159907628:159912752:159912941,	159907476	159907628	159907562	159907562	Nonsense_Mutation	C	T	p.W105*
SKCM	TCGA-EE-A2MJ-06	SH3PXD2B	ENST00000518522.1	chr5	171760502:171760773:171773139:171773265:171774286:171774336,	171773140	171773265	171773190	171773190	Nonsense_Mutation	G	A	p.Q380*
SKCM	TCGA-EE-A2MJ-06	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510946	169510946	Nonsense_Mutation	G	A	p.Q1133*
SKCM	TCGA-EE-A2MJ-06	KDM1A	ENST00000356634.3,ENST00000542151.1,ENST00000400181.4	chr1	23397717:23397852:23398616:23398690:23399784:23399896,	23398617	23398690	23398665	23398665	Nonsense_Mutation	C	T	p.Q533*
SKCM	TCGA-EE-A2MJ-06	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101525896:101525970:101535638:101535845:101540247:101541667,	101535639	101535845	101535694	101535694	Nonsense_Mutation	T	A	p.Y326*
SKCM	TCGA-EE-A2MJ-06	SULT1C2	ENST00000251481.6,ENST00000409067.2	chr2	108910684:108910810:108917293:108917391:108921029:108921106,	108917294	108917391	108917375	108917375	Nonsense_Mutation	G	A	p.W131*
SKCM	TCGA-EE-A2MJ-06	SULT1C2	ENST00000438339.1	chr2	108910684:108910810:108917355:108917391:108921029:108921106,	108917356	108917391	108917375	108917375	Nonsense_Mutation	G	A	p.W131*
SKCM	TCGA-EE-A2MJ-06	SULT1C2	ENST00000437390.2	chr2	108910684:108910810:108917251:108917391:108921029:108921106,	108917252	108917391	108917375	108917375	Nonsense_Mutation	G	A	p.W131*
SKCM	TCGA-EE-A2MJ-06	OBSCN	ENST00000366709.4,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228437665:228437941:228444351:228444627:228451816:228452092,	228444352	228444627	228444558	228444558	Nonsense_Mutation	C	T	p.Q1598*
SKCM	TCGA-EE-A2MJ-06	PEX6	ENST00000244546.4	chr6	42941740:42941824:42942612:42942776:42946006:42946888,	42942613	42942776	42942623	42942623	Nonsense_Mutation	G	A	p.Q346*
SKCM	TCGA-EE-A2MJ-06	DQX1	ENST00000404568.3,ENST00000393951.2,ENST00000473508.1	chr2	74750465:74750664:74751049:74751434:74752135:74752329,	74751050	74751434	74751156	74751156	Nonsense_Mutation	C	T	p.W237*
SKCM	TCGA-EE-A2MJ-06	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71576268	71576268	Nonsense_Mutation	C	T	p.Q62*
SKCM	TCGA-EE-A2MJ-06	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71576268	71576268	Nonsense_Mutation	C	T	p.Q62*
SKCM	TCGA-EE-A2MJ-06	HRASLS5	ENST00000540857.1,ENST00000539221.1,ENST00000538712.1,ENST00000301790.4	chr11	63233631:63233844:63235828:63235937:63258358:63258411,63233631:63233844:63235828:63235937:63256342:63256448,	63235829	63235937	63235895	63235895	Nonsense_Mutation	G	A	p.R130*
SKCM	TCGA-EE-A2MJ-06	ABCB1	ENST00000543898.1,ENST00000265724.3	chr7	87179166:87179370:87179486:87179612:87179783:87179894,	87179487	87179612	87179525	87179525	Nonsense_Mutation	G	A	p.Q438*
SKCM	TCGA-EE-A2MJ-06	KRIT1	ENST00000394505.2,ENST00000340022.2,ENST00000394503.2,ENST00000394507.1,ENST00000412043.2	chr7	91864121:91864237:91864716:91864960:91865726:91865856,	91864717	91864960	91864731	91864731	Nonsense_Mutation	G	A	p.Q239*
SKCM	TCGA-EE-A2MJ-06	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000538928.1,ENST00000582678.1,ENST00000584529.1	chr17	61558451:61558549:61558926:61559099:61559826:61560050,	61558927	61559099	61558931	61558931	Nonsense_Mutation	G	A	p.W317*
SKCM	TCGA-EE-A2MJ-06	UTRN	ENST00000367526.4,ENST00000367545.3	chr6	145157436:145157677:145160308:145160420:145161875:145161968,	145160309	145160420	145160346	145160346	Nonsense_Mutation	G	A	p.W3368*
SKCM	TCGA-EE-A2MJ-06	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071057	197071057	Nonsense_Mutation	G	A	p.R2442*
SKCM	TCGA-EE-A2MJ-06	SPEN	ENST00000438066.1	chr1	16199310:16199631:16202696:16203173:16235815:16235976,16199996:16200890:16202696:16203173:16235815:16235976,	16202697	16203173	16202812	16202812	Nonsense_Mutation	C	T	p.R174*
SKCM	TCGA-EE-A2MJ-06	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022544	64022544	Nonsense_Mutation	G	A	p.R33*
SKCM	TCGA-EE-A2MJ-06	IGSF11	ENST00000354673.2,ENST00000441144.2,ENST00000393775.2,ENST00000489689.1,ENST00000425327.2,ENST00000491903.1	chr3	118624514:118624565:118644947:118645103:118647355:118647563,	118644948	118645103	118645011	118645011	Nonsense_Mutation	G	A	p.R172*
SKCM	TCGA-EE-A2MJ-06	TNIP3	ENST00000507879.1,ENST00000057513.3,ENST00000509841.1,ENST00000515605.1,ENST00000511909.1,ENST00000454328.1	chr4	122063880:122063931:122068203:122068329:122071257:122071270,	122068204	122068329	122068287	122068287	Nonsense_Mutation	G	A	p.R218*
SKCM	TCGA-EE-A2MJ-06	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844579	27844579	Nonsense_Mutation	C	T	p.R605*
SKCM	TCGA-EE-A2MJ-06	ICA1	ENST00000407906.1,ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000317367.5,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8196745:8196844:8198156:8198282:8257934:8258089,	8198157	8198282	8198255	8198255	Nonsense_Mutation	T	A	p.K203*
SKCM	TCGA-EE-A2MJ-06	PRKCQ	ENST00000539722.1,ENST00000263125.5	chr10	6469982:6470324:6472771:6472900:6483854:6484043,	6472772	6472900	6472820	6472820	Nonsense_Mutation	C	T	p.W639*
SKCM	TCGA-EE-A2MJ-06	PDGFC	ENST00000422544.2	chr4	157732104:157732169:157771372:157771568:157891937:157892055,	157771373	157771568	157771463	157771463	Nonsense_Mutation	C	T	p.W75*
SKCM	TCGA-EE-A2MJ-06	MYO5C	ENST00000261839.7	chr15	52531929:52532076:52534244:52534410:52536552:52536715,	52534245	52534410	52534250	52534250	Nonsense_Mutation	G	A	p.R851*
SKCM	TCGA-EE-A2MJ-06	UBE2V2	ENST00000518360.1	chr8	48921001:48921030:48955592:48955741:48962412:48962538,	48955593	48955741	48955640	48955640	Nonsense_Mutation	G	T	p.G22*
SKCM	TCGA-EE-A2MJ-06	CFTR	ENST00000426809.1,ENST00000003084.6	chr7	117182069:117182162:117199517:117199709:117227792:117227803,117188694:117188877:117199517:117199709:117227792:117227803,	117199518	117199709	117199612	117199612	Nonsense_Mutation	G	A	p.W496*
SKCM	TCGA-EE-A2MJ-06	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022525	64022525	Nonsense_Mutation	C	T	p.W39*
SKCM	TCGA-EE-A2MJ-06	LILRB1	ENST00000396331.1,ENST00000434867.2,ENST00000396327.3,ENST00000396315.1,ENST00000396332.4,ENST00000396321.2,ENST00000396317.1,ENST00000418536.2,ENST00000324602.7	chr19	55145424:55145472:55146091:55146214:55146554:55146630,	55146092	55146214	55146187	55146187	Nonsense_Mutation	C	T	p.R486*
SKCM	TCGA-EE-A2MJ-06	LILRB1	ENST00000462628.1	chr19	55145424:55145472:55146038:55146214:55146554:55146630,	55146039	55146214	55146187	55146187	Nonsense_Mutation	C	T	p.R486*
SKCM	TCGA-EE-A2MJ-06	CD1E	ENST00000444681.2	chr1	158324254:158324463:158325089:158325359:158325616:158325730,158323805:158323836:158325089:158325359:158325616:158325730,	158325090	158325359	158325230	158325230	Nonsense_Mutation	C	T	p.Q67*
SKCM	TCGA-D3-A3MO-06	PREP	ENST00000369110.3	chr6	105725439:105726313:105729620:105729777:105730325:105730457,	105729621	105729777	105729674	105729674	Nonsense_Mutation	C	T	p.W595*
SKCM	TCGA-D3-A3MO-06	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839564	62839564	Nonsense_Mutation	G	T	p.E339*
SKCM	TCGA-D3-A5GO-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830330	61830330	Nonsense_Mutation	G	A	p.Q3437*
SKCM	TCGA-D3-A5GO-06	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275901	114275901	Nonsense_Mutation	C	T	p.Q2043*
SKCM	TCGA-D3-A5GO-06	HAO2	ENST00000325945.3,ENST00000361035.4	chr1	119927473:119927676:119929244:119929454:119934732:119934891,	119929245	119929454	119929329	119929329	Nonsense_Mutation	C	T	p.R229*
SKCM	TCGA-D3-A5GO-06	PLD5	ENST00000442594.2,ENST00000366545.4	chr1	242428663:242428750:242451663:242451832:242511407:242511544,242428663:242428750:242451663:242451832:242511400:242511544,	242451664	242451832	242451697	242451697	Nonsense_Mutation	C	T	p.W62*
SKCM	TCGA-D3-A5GO-06	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24460497:24460650:24462937:24463132:24466750:24466841,	24462938	24463132	24463103	24463103	Nonsense_Mutation	G	T	p.E735*
SKCM	TCGA-D3-A5GO-06	OSBP	ENST00000263847.1	chr11	59348923:59349027:59361076:59361197:59361482:59361728,	59361077	59361197	59361107	59361107	Nonsense_Mutation	G	A	p.R550*
SKCM	TCGA-D3-A5GO-06	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133920430:133920585:133923621:133923778:133925291:133925480,	133923622	133923778	133923722	133923722	Nonsense_Mutation	G	A	p.W1368*
SKCM	TCGA-D3-A5GO-06	OCIAD2	ENST00000514576.1,ENST00000273860.4,ENST00000510159.1	chr4	48901845:48901942:48906500:48906628:48908674:48908744,	48906501	48906628	48906539	48906539	Nonsense_Mutation	G	A	p.Q10*
SKCM	TCGA-D3-A5GO-06	OCIAD2	ENST00000381464.2	chr4	48901845:48901942:48906500:48906651:48908674:48908744,	48906501	48906651	48906539	48906539	Nonsense_Mutation	G	A	p.Q10*
SKCM	TCGA-D3-A5GO-06	SLC16A14	ENST00000295190.4	chr2	230899697:230902247:230910460:230911438:230914476:230914620,	230910461	230911438	230911259	230911259	Nonsense_Mutation	G	A	p.Q195*
SKCM	TCGA-D3-A5GO-06	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169354160:169354266:169362487:169362643:169369788:169369930,	169362488	169362643	169362491	169362491	Nonsense_Mutation	G	A	p.Q431*
SKCM	TCGA-D3-A5GO-06	NSUN6	ENST00000377304.4	chr10	18840751:18840900:18874877:18875022:18885136:18885256,	18874878	18875022	18874971	18874971	Nonsense_Mutation	G	A	p.Q277*
SKCM	TCGA-D3-A5GO-06	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151246960:151247050:151271143:151271311:151336589:151336742,	151271144	151271311	151271224	151271224	Nonsense_Mutation	G	A	p.R2428*
SKCM	TCGA-D3-A5GO-06	SCAF1	ENST00000598359.1	chr19	50145916:50145963:50148277:50148391:50148610:50148668,	50148278	50148391	50148305	50148305	Nonsense_Mutation	C	T	p.R8*
SKCM	TCGA-EE-A2A5-06	EAF2	ENST00000490434.1	chr3	121563299:121563394:121575857:121576003:121591383:121591635,	121575858	121576003	121575914	121575914	Nonsense_Mutation	G	A	p.W132*
SKCM	TCGA-EE-A2A5-06	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231825	230231825	Nonsense_Mutation	C	T	p.W622*
SKCM	TCGA-EE-A2A5-06	TG	ENST00000522996.1,ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000522809.1,ENST00000220616.4,ENST00000519178.1	chr8	134107402:134107452:134108449:134108617:134125665:134125740,	134108450	134108617	134108579	134108579	Nonsense_Mutation	C	T	p.Q2512*
SKCM	TCGA-EE-A2A5-06	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159897984	159897984	Nonsense_Mutation	C	T	p.W1065*
SKCM	TCGA-EE-A2A5-06	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927268	43927268	Nonsense_Mutation	C	T	p.Q391*
SKCM	TCGA-EE-A2A5-06	TBL1XR1	ENST00000457928.2,ENST00000430069.1	chr3	176751985:176752113:176755885:176755960:176756100:176756222,	176755886	176755960	176755937	176755937	Nonsense_Mutation	C	T	p.W357*
SKCM	TCGA-EE-A2A5-06	STK38L	ENST00000545470.1,ENST00000539577.1,ENST00000389032.3	chr12	27462046:27462130:27465481:27465605:27467436:27467591,	27465482	27465605	27465494	27465494	Nonsense_Mutation	C	T	p.R136*
SKCM	TCGA-FS-A4F5-06	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6026709	6026709	Nonsense_Mutation	G	A	p.R563*
SKCM	TCGA-FS-A4F5-06	MAOA	ENST00000542639.1,ENST00000497485.1,ENST00000338702.3	chrX	43552537:43552675:43571118:43571223:43571951:43572043,	43571119	43571223	43571159	43571159	Nonsense_Mutation	G	A	p.W116*
SKCM	TCGA-FS-A4F5-06	WDR66	ENST00000397454.2,ENST00000288912.4	chr12	122396848:122397000:122398490:122398664:122399883:122400068,	122398491	122398664	122398590	122398590	Nonsense_Mutation	C	T	p.R745*
SKCM	TCGA-FS-A4F5-06	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000482356.1,ENST00000478741.1	chr3	121810447:121810497:121822358:121822694:121825044:121825165,	121822359	121822694	121822572	121822572	Nonsense_Mutation	G	A	p.W93*
SKCM	TCGA-FS-A4F5-06	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619812	114619812	Nonsense_Mutation	C	T	p.Q157*
SKCM	TCGA-FS-A4F5-06	AK5	ENST00000344720.5,ENST00000530826.1,ENST00000354567.2	chr1	77984248:77984412:77987511:77987628:78001531:78001570,	77987512	77987628	77987620	77987620	Nonsense_Mutation	G	T	p.G448*
SKCM	TCGA-FS-A4F5-06	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146823838	146823838	Nonsense_Mutation	C	T	p.W191*
SKCM	TCGA-FS-A4F5-06	TF	ENST00000494430.1	chr3	133472438:133472547:133473346:133473515:133474206:133474258,	133473347	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132*
SKCM	TCGA-FS-A4F5-06	TF	ENST00000493011.1,ENST00000482271.1,ENST00000264998.3,ENST00000402696.3	chr3	133472438:133472547:133473338:133473515:133474206:133474258,	133473339	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132*
SKCM	TCGA-FS-A4F5-06	RSPH1	ENST00000493019.1,ENST00000291536.3,ENST00000398352.3	chr21	43896007:43896157:43897400:43897554:43902746:43902818,	43897401	43897554	43897468	43897468	Nonsense_Mutation	C	T	p.W220*
SKCM	TCGA-FS-A4F5-06	RSF1	ENST00000308488.6,ENST00000528095.1,ENST00000360355.2	chr11	77413445:77413540:77436589:77436744:77451775:77451981,	77436590	77436744	77436740	77436740	Nonsense_Mutation	G	A	p.R195*
SKCM	TCGA-FS-A4F5-06	HRASLS5	ENST00000540857.1,ENST00000539221.1,ENST00000538712.1,ENST00000301790.4	chr11	63233631:63233844:63235828:63235937:63258358:63258411,63233631:63233844:63235828:63235937:63256342:63256448,	63235829	63235937	63235895	63235895	Nonsense_Mutation	G	A	p.R130*
SKCM	TCGA-EE-A2GS-06	ATG2A	ENST00000421419.2,ENST00000418259.1,ENST00000377264.3	chr11	64675219:64675362:64676462:64676622:64676742:64676839,	64676463	64676622	64676581	64676581	Nonsense_Mutation	C	T	p.W749*
SKCM	TCGA-EE-A2GS-06	LCMT1	ENST00000576625.1,ENST00000380962.5,ENST00000399069.3,ENST00000572869.1	chr16	25162874:25162936:25172422:25172525:25175918:25176039,	25172423	25172525	25172473	25172473	Nonsense_Mutation	C	T	p.R173*
SKCM	TCGA-ER-A3PL-06	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579458	82579458	Nonsense_Mutation	C	T	p.W3482*
SKCM	TCGA-ER-A3PL-06	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228486959:228487223:228487582:228487846:228491375:228491639,	228487583	228487846	228487685	228487685	Nonsense_Mutation	G	A	p.W4526*
SKCM	TCGA-ER-A3PL-06	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557805	210557805	Nonsense_Mutation	G	A	p.W304*
SKCM	TCGA-ER-A3PL-06	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557805	210557805	Nonsense_Mutation	G	A	p.W304*
SKCM	TCGA-ER-A3PL-06	CNTRL	ENST00000373845.2,ENST00000373855.1,ENST00000238341.5,ENST00000373850.1	chr9	123924133:123924249:123924331:123924549:123927220:123927378,	123924332	123924549	123924522	123924522	Nonsense_Mutation	G	A	p.W1799*
SKCM	TCGA-BF-A5EP-01	ZYX	ENST00000322764.5,ENST00000449423.2,ENST00000354434.4,ENST00000392910.2	chr7	143080092:143080415:143085311:143085432:143085581:143085593,	143085312	143085432	143085408	143085408	Nonsense_Mutation	C	T	p.Q374*
SKCM	TCGA-BF-A5EP-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96232106:96232208:96232435:96232567:96235824:96235893,	96232436	96232567	96232551	96232551	Nonsense_Mutation	G	A	p.W496*
SKCM	TCGA-FW-A5DX-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623733	623733	Nonsense_Mutation	C	A	p.E207*
SKCM	TCGA-FW-A5DX-01	PER2	ENST00000440245.1,ENST00000254657.3	chr2	239170833:239170985:239171592:239171699:239174152:239174231,	239171593	239171699	239171671	239171671	Nonsense_Mutation	G	A	p.Q359*
SKCM	TCGA-FW-A5DX-01	GALNT14	ENST00000424136.1	chr2	31189142:31189168:31215703:31215873:31360823:31360887,31189142:31189168:31215703:31215873:31337608:31337693,31189142:31189168:31215703:31215873:31355495:31355578,	31215704	31215873	31215756	31215756	Nonsense_Mutation	C	A	p.E83*
SKCM	TCGA-EE-A29N-06	NAMPT	ENST00000222553.3	chr7	105893462:105893597:105894809:105894950:105902033:105902153,	105894810	105894950	105894856	105894856	Nonsense_Mutation	A	T	p.L395*
SKCM	TCGA-EE-A29N-06	RANBP10	ENST00000536251.1,ENST00000602506.1,ENST00000411657.2,ENST00000602677.1,ENST00000448631.2,ENST00000317506.3	chr16	67763182:67763387:67763582:67763731:67763840:67763949,	67763583	67763731	67763670	67763670	Nonsense_Mutation	G	A	p.R354*
SKCM	TCGA-EE-A29N-06	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316436	133316436	Nonsense_Mutation	G	A	p.Q179*
SKCM	TCGA-EE-A29N-06	ZNF385A	ENST00000550774.1,ENST00000338010.5,ENST00000551109.1,ENST00000552382.1,ENST00000546970.1,ENST00000546919.1,ENST00000547210.1,ENST00000394313.2	chr12	54764807:54764880:54767756:54767919:54769627:54769738,54765467:54765499:54767756:54767919:54778211:54778244,54765467:54765499:54767756:54767919:54769627:54769738,	54767757	54767919	54767880	54767880	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A29N-06	CNPY3	ENST00000394142.3	chr6	42896981:42897459:42903311:42903408:42905454:42905577,	42903312	42903408	42903379	42903379	Nonsense_Mutation	G	T	p.E115*
SKCM	TCGA-EE-A29N-06	FOXRED1	ENST00000527004.1,ENST00000263578.5	chr11	126139103:126139310:126141331:126141552:126142863:126142974,126139095:126139186:126141331:126141552:126142863:126142974,	126141332	126141552	126141523	126141523	Nonsense_Mutation	C	T	p.R93*
SKCM	TCGA-EE-A29N-06	FOXRED1	ENST00000532101.1	chr11	126139095:126139186:126141114:126141552:126142863:126142974,	126141115	126141552	126141523	126141523	Nonsense_Mutation	C	T	p.R93*
SKCM	TCGA-EE-A29N-06	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30740286:30740552:30740690:30740893:30744600:30744770,	30740691	30740893	30740881	30740881	Nonsense_Mutation	C	T	p.Q2039*
SKCM	TCGA-EE-A29N-06	ZNF429	ENST00000358491.4,ENST00000597078.1	chr19	21688442:21688576:21712459:21712586:21713390:21713486,	21712460	21712586	21712511	21712511	Nonsense_Mutation	C	T	p.Q19*
SKCM	TCGA-EE-A29N-06	ANK3	ENST00000280772.2,ENST00000503366.1,ENST00000373827.2	chr10	61946472:61946670:61955902:61956001:61956284:61956383,	61955903	61956001	61955959	61955959	Nonsense_Mutation	G	A	p.Q611*
SKCM	TCGA-EE-A29N-06	ACPP	ENST00000336375.5,ENST00000351273.7,ENST00000512463.1	chr3	132056299:132056398:132061395:132061488:132063770:132063903,	132061396	132061488	132061482	132061482	Nonsense_Mutation	T	G	p.Y214*
SKCM	TCGA-EE-A29N-06	NEK4	ENST00000233027.5,ENST00000383721.4,ENST00000535191.1,ENST00000461689.1	chr3	52778254:52778321:52780076:52780226:52780749:52780920,	52780077	52780226	52780208	52780208	Nonsense_Mutation	G	A	p.R566*
SKCM	TCGA-ER-A193-06	ZNF341	ENST00000497876.1,ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32346521:32346612:32349667:32349861:32354656:32354847,	32349668	32349861	32349678	32349678	Nonsense_Mutation	G	T	p.E347*
SKCM	TCGA-ER-A193-06	GIGYF2	ENST00000440945.1,ENST00000452341.2,ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000423659.1,ENST00000409196.3,ENST00000482952.1	chr2	233675953:233676061:233677100:233677201:233680346:233680447,	233677101	233677201	233677177	233677177	Nonsense_Mutation	C	T	p.Q717*
SKCM	TCGA-ER-A193-06	RNLS	ENST00000331772.4	chr10	90034717:90034789:90074222:90074398:90122308:90122482,90044715:90045263:90074222:90074398:90122308:90122482,	90074223	90074398	90074264	90074264	Nonsense_Mutation	G	A	p.Q279*
SKCM	TCGA-ER-A193-06	DERL2	ENST00000571971.1,ENST00000576551.1	chr17	5383443:5383464:5383706:5383863:5384420:5384459,	5383707	5383863	5383830	5383830	Nonsense_Mutation	G	A	p.R134*
SKCM	TCGA-ER-A193-06	AKT1	ENST00000554848.1,ENST00000555926.1,ENST00000402615.2,ENST00000407796.2,ENST00000349310.3,ENST00000555528.1	chr14	105243007:105243107:105246424:105246553:105258934:105259057,	105246425	105246553	105246461	105246461	Nonsense_Mutation	G	A	p.Q47*
SKCM	TCGA-ER-A193-06	MAP3K5	ENST00000359015.4	chr6	136935296:136935424:136943985:136944119:136958462:136958544,	136943986	136944119	136944029	136944029	Nonsense_Mutation	G	A	p.Q703*
SKCM	TCGA-ER-A193-06	IGSF8	ENST00000314485.7,ENST00000368086.1	chr1	160062361:160062485:160062713:160063121:160063499:160063961,	160062714	160063121	160062789	160062789	Nonsense_Mutation	G	A	p.R413*
SKCM	TCGA-ER-A193-06	S100A6	ENST00000368719.4	chr1	153507189:153507306:153507677:153507836:153508264:153508409,153507193:153507306:153507677:153507836:153508424:153508467,	153507678	153507836	153507797	153507797	Nonsense_Mutation	G	A	p.Q7*
SKCM	TCGA-ER-A193-06	TTC21B	ENST00000464374.1,ENST00000243344.7	chr2	166802033:166802200:166805903:166806014:166806104:166806234,	166805904	166806014	166805994	166805994	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-ER-A193-06	IFIH1	ENST00000263642.2	chr2	163133924:163134203:163134714:163134838:163136505:163136622,	163134715	163134838	163134738	163134738	Nonsense_Mutation	C	T	p.W581*
SKCM	TCGA-ER-A193-06	KHDRBS3	ENST00000355849.5,ENST00000517859.1,ENST00000524199.1,ENST00000524282.1	chr8	136560996:136561143:136569690:136569830:136594120:136594316,	136569691	136569830	136569778	136569778	Nonsense_Mutation	C	T	p.R187*
SKCM	TCGA-ER-A193-06	KCNIP1	ENST00000411494.1	chr5	169931576:169931637:170139857:170139890:170145761:170145886,	170139858	170139890	170139870	170139870	Nonsense_Mutation	G	A	p.W25*
SKCM	TCGA-ER-A193-06	GPA33	ENST00000367868.3	chr1	167038158:167038375:167042621:167042776:167059481:167059563,	167042622	167042776	167042666	167042666	Nonsense_Mutation	G	A	p.R52*
SKCM	TCGA-ER-A193-06	VAMP7	ENST00000479687.1	chrX	155111040:155111111:155119120:155119296:155125285:155125343,	155119121	155119296	155119253	155119253	Nonsense_Mutation	A	T	p.K42*
SKCM	TCGA-ER-A193-06	VAMP7	ENST00000488344.1	chrX	155111040:155111111:155119120:155119275:155125285:155125343,155111040:155111111:155119120:155119275:155127775:155127913,	155119121	155119275	155119253	155119253	Nonsense_Mutation	A	T	p.K42*
SKCM	TCGA-ER-A193-06	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33549311:33549488:33561131:33561284:33576158:33577265,	33561132	33561284	33561138	33561138	Nonsense_Mutation	C	T	p.W1373*
SKCM	TCGA-ER-A193-06	SMYD4	ENST00000573937.1,ENST00000305513.7,ENST00000570368.1,ENST00000571854.1	chr17	1707919:1708009:1715264:1715409:1731154:1731300,	1715265	1715409	1715306	1715306	Nonsense_Mutation	G	A	p.Q80*
SKCM	TCGA-ER-A193-06	TLN2	ENST00000306829.6,ENST00000561311.1	chr15	63009774:63009888:63011965:63012079:63014551:63014686,	63011966	63012079	63011987	63011987	Nonsense_Mutation	C	T	p.Q967*
SKCM	TCGA-ER-A193-06	SP110	ENST00000358662.4,ENST00000540870.1,ENST00000258381.6,ENST00000490880.1,ENST00000258382.5	chr2	231065600:231065681:231067294:231067444:231072705:231072774,	231067295	231067444	231067394	231067394	Nonsense_Mutation	G	A	p.Q317*
SKCM	TCGA-ER-A193-06	SP110	ENST00000392048.3	chr2	231065600:231065681:231067294:231067438:231072705:231072774,	231067295	231067438	231067394	231067394	Nonsense_Mutation	G	A	p.Q317*
SKCM	TCGA-ER-A193-06	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125058007:125058142:125061847:125061997:125072420:125072531,	125061848	125061997	125061927	125061927	Nonsense_Mutation	T	A	p.L935*
SKCM	TCGA-ER-A193-06	MVB12A	ENST00000528911.1,ENST00000600514.1,ENST00000529939.1,ENST00000543795.1,ENST00000317040.7	chr19	17531346:17531443:17533140:17533267:17534501:17534608,17531346:17531443:17533140:17533267:17534306:17534426,	17533141	17533267	17533260	17533260	Nonsense_Mutation	C	T	p.R136*
SKCM	TCGA-ER-A193-06	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460137	107460137	Nonsense_Mutation	C	T	p.W99*
SKCM	TCGA-XV-A9W2-01	TPCN2	ENST00000294309.3,ENST00000542467.1,ENST00000535009.1	chr11	68839390:68839491:68840094:68840176:68840382:68840469,	68840095	68840176	68840132	68840132	Nonsense_Mutation	C	T	p.Q367*
SKCM	TCGA-EB-A3Y6-01	NINL	ENST00000278886.6	chr20	25450626:25450731:25456678:25457725:25459558:25459663,	25456679	25457725	25456969	25456969	Nonsense_Mutation	C	T	p.W986*
SKCM	TCGA-EB-A3Y6-01	SPTBN5	ENST00000320955.6	chr15	42160266:42160416:42160595:42160799:42162038:42162218,	42160596	42160799	42160643	42160643	Nonsense_Mutation	G	A	p.Q2004*
SKCM	TCGA-EB-A3Y6-01	HMGCS2	ENST00000369406.3,ENST00000544913.2	chr1	120295171:120295297:120295902:120296009:120298049:120298220,	120295903	120296009	120295927	120295927	Nonsense_Mutation	G	A	p.R424*
SKCM	TCGA-EB-A3Y6-01	ADCY5	ENST00000466617.1,ENST00000462833.1,ENST00000309879.5,ENST00000483566.1,ENST00000491190.1	chr3	123049786:123049863:123051410:123051522:123066628:123066750,	123051411	123051522	123051503	123051503	Nonsense_Mutation	C	A	p.E476*
SKCM	TCGA-EB-A3Y6-01	GRM7	ENST00000357716.4,ENST00000389336.4,ENST00000440923.3,ENST00000445087.1,ENST00000402647.2,ENST00000486284.1,ENST00000389335.3,ENST00000403881.1,ENST00000467425.1,ENST00000463676.2	chr3	7456709:7456850:7494293:7494494:7503269:7503409,	7494294	7494494	7494344	7494344	Nonsense_Mutation	C	T	p.Q409*
SKCM	TCGA-EB-A3Y6-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266848	6266848	Nonsense_Mutation	G	A	p.R172*
SKCM	TCGA-EB-A3Y6-01	TRDMT1	ENST00000495022.1,ENST00000377799.3,ENST00000354631.3,ENST00000313936.10,ENST00000452380.2,ENST00000412821.3,ENST00000351358.4,ENST00000377766.5,ENST00000457442.2,ENST00000358282.7	chr10	17199442:17199783:17201144:17201228:17202303:17202373,	17201145	17201228	17201180	17201180	Nonsense_Mutation	G	A	p.Q170*
SKCM	TCGA-EB-A3Y6-01	BEST1	ENST00000378042.3	chr11	61726969:61727050:61727363:61727515:61729726:61729843,61725617:61725770:61727363:61727515:61729726:61729843,	61727364	61727515	61727429	61727429	Nonsense_Mutation	G	A	p.W278*
SKCM	TCGA-D3-A1Q1-06	TGM1	ENST00000206765.6	chr14	24728909:24729017:24729145:24729264:24729655:24729904,	24729146	24729264	24729191	24729191	Nonsense_Mutation	G	T	p.Y277*
SKCM	TCGA-WE-A8K6-06	AADAT	ENST00000353187.2,ENST00000515480.1,ENST00000337664.4,ENST00000509167.1	chr4	170988477:170988539:170989741:170989838:170990298:170990381,	170989742	170989838	170989744	170989744	Nonsense_Mutation	G	A	p.Q300*
SKCM	TCGA-WE-A8K6-06	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84683293:84683476:84685134:84685251:84690161:84690345,	84685135	84685251	84685194	84685194	Nonsense_Mutation	C	T	p.Q1406*
SKCM	TCGA-WE-A8K6-06	CTC1	ENST00000578240.1,ENST00000449476.2,ENST00000315684.8	chr17	8133880:8133969:8134593:8134787:8135043:8135133,	8134594	8134787	8134667	8134667	Nonsense_Mutation	G	A	p.Q866*
SKCM	TCGA-WE-A8K6-06	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559474	56559474	Nonsense_Mutation	G	A	p.Q954*
SKCM	TCGA-WE-A8K6-06	LRIG3	ENST00000379141.4,ENST00000433272.2,ENST00000320743.3	chr12	59277301:59277373:59279612:59279684:59280591:59280672,	59279613	59279684	59279677	59279677	Nonsense_Mutation	G	A	p.Q394*
SKCM	TCGA-WE-A8K6-06	TECPR1	ENST00000379795.3,ENST00000463402.1,ENST00000462511.1,ENST00000447648.2,ENST00000474915.1,ENST00000490842.1	chr7	97847278:97847354:97850972:97851065:97851697:97851833,	97850973	97851065	97851052	97851052	Nonsense_Mutation	G	T	p.Y1026*
SKCM	TCGA-EE-A29G-06	HEMK1	ENST00000455834.1,ENST00000434410.1,ENST00000448997.1,ENST00000232854.4	chr3	50614939:50615004:50615256:50615306:50616251:50616357,	50615257	50615306	50615280	50615280	Nonsense_Mutation	G	A	p.W213*
SKCM	TCGA-EE-A29G-06	IGSF21	ENST00000251296.1,ENST00000497331.2	chr1	18692112:18692191:18702803:18702889:18703293:18703414,	18702804	18702889	18702887	18702887	Nonsense_Mutation	C	T	p.Q367*
SKCM	TCGA-EE-A29G-06	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	138163182:138163377:138169178:138169442:138208414:138208593,	138169179	138169442	138169379	138169379	Nonsense_Mutation	C	T	p.R966*
SKCM	TCGA-EE-A29G-06	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39165929:39166073:39171365:39171627:39175945:39176084,	39171366	39171627	39171462	39171462	Nonsense_Mutation	G	A	p.R413*
SKCM	TCGA-EE-A29G-06	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24825702:24825822:24831621:24831699:24833909:24834032,24825702:24825822:24831621:24831699:24831811:24832637,	24831622	24831699	24831694	24831694	Nonsense_Mutation	C	T	p.Q886*
SKCM	TCGA-EB-A299-01	TMEM177	ENST00000409951.1	chr2	120436778:120436852:120438407:120438699:120443233:120443330,	120438408	120438699	120438625	120438625	Nonsense_Mutation	C	T	p.Q66*
SKCM	TCGA-EB-A299-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169492434:169492590:169493038:169493142:169494074:169494146,	169493039	169493142	169493087	169493087	Nonsense_Mutation	C	T	p.W1953*
SKCM	TCGA-EB-A299-01	DNAJC12	ENST00000483798.2,ENST00000225171.2	chr10	69556839:69556968:69565340:69565545:69571281:69571421,	69565341	69565545	69565428	69565428	Nonsense_Mutation	C	A	p.E139*
SKCM	TCGA-EB-A299-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000602997.1,ENST00000605781.1,ENST00000380554.3	chr10	5138601:5138769:5139625:5139742:5140993:5141071,	5139626	5139742	5139644	5139644	Nonsense_Mutation	C	T	p.R91*
SKCM	TCGA-EB-A299-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35852603:35852879:35853054:35853205:35854510:35854683,	35853055	35853205	35853067	35853067	Nonsense_Mutation	C	T	p.Q709*
SKCM	TCGA-EE-A29B-06	NPHS2	ENST00000367616.4	chr1	179521737:179521816:179523610:179523666:179528813:179528896,	179523611	179523666	179523637	179523637	Nonsense_Mutation	C	T	p.W256*
SKCM	TCGA-EE-A29B-06	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000473086.2,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42490267:42490381:42492087:42492291:42492469:42492529,	42492088	42492291	42492161	42492161	Nonsense_Mutation	C	T	p.W108*
SKCM	TCGA-EE-A29B-06	AFP	ENST00000226359.2,ENST00000395792.2,ENST00000508838.1	chr4	74316331:74316470:74318117:74318341:74319481:74319614,	74318118	74318341	74318310	74318310	Nonsense_Mutation	C	T	p.Q541*
SKCM	TCGA-EE-A29B-06	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39536376:39536500:39543618:39543734:39545138:39545297,	39543619	39543734	39543713	39543713	Nonsense_Mutation	G	A	p.R135*
SKCM	TCGA-EE-A29B-06	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937001	48937001	Nonsense_Mutation	C	T	p.Q257*
SKCM	TCGA-EE-A29B-06	ITGB5	ENST00000296181.4	chr3	124515437:124515664:124536467:124536557:124538585:124538681,124527868:124528003:124536467:124536557:124538585:124538681,	124536468	124536557	124536491	124536491	Nonsense_Mutation	G	A	p.Q369*
SKCM	TCGA-GN-A4U3-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897940	36897940	Nonsense_Mutation	C	T	p.W497*
SKCM	TCGA-ER-A19G-06	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6,ENST00000423048.1	chr2	73777393:73777564:73784346:73784481:73786098:73786269,	73784347	73784481	73784358	73784358	Nonsense_Mutation	C	T	p.Q3363*
SKCM	TCGA-ER-A19G-06	RPL5	ENST00000470843.1	chr1	93297654:93297674:93298945:93299015:93299101:93299217,	93298946	93299015	93298955	93298955	Nonsense_Mutation	A	T	p.K5*
SKCM	TCGA-ER-A19G-06	AGK	ENST00000355413.4,ENST00000473247.1	chr7	141336759:141336817:141341047:141341198:141341610:141341708,	141341048	141341198	141341053	141341053	Nonsense_Mutation	G	A	p.W244*
SKCM	TCGA-ER-A19G-06	GDPD2	ENST00000538649.1	chrX	69642990:69643232:69645612:69645706:69645901:69645961,	69645613	69645706	69645640	69645640	Nonsense_Mutation	G	A	p.W79*
SKCM	TCGA-ER-A19G-06	SIM1	ENST00000369208.3,ENST00000262901.4	chr6	100838958:100838967:100841362:100841765:100868665:100868834,	100841363	100841765	100841464	100841464	Nonsense_Mutation	C	T	p.W490*
SKCM	TCGA-ER-A19G-06	ABL2	ENST00000392043.3,ENST00000509520.1,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3,ENST00000504324.1	chr1	179090729:179091002:179095511:179095807:179100445:179100616,	179095512	179095807	179095764	179095764	Nonsense_Mutation	C	T	p.W145*
SKCM	TCGA-ER-A19G-06	CLEC4G	ENST00000599020.1	chr19	7796151:7796205:7796546:7796657:7796933:7797008,	7796547	7796657	7796641	7796641	Nonsense_Mutation	C	T	p.W24*
SKCM	TCGA-ER-A19G-06	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755896	153755896	Nonsense_Mutation	C	T	p.R210*
SKCM	TCGA-EE-A2GH-06	CNTD1	ENST00000588527.1	chr17	40950817:40950848:40955637:40955713:40956242:40956414,40950904:40951036:40955637:40955713:40956242:40956414,	40955638	40955713	40955691	40955691	Nonsense_Mutation	C	T	p.Q75*
SKCM	TCGA-EE-A2GH-06	SLC13A3	ENST00000472148.1,ENST00000396360.1	chr20	45212210:45212308:45217798:45217894:45221042:45221085,	45217799	45217894	45217889	45217889	Nonsense_Mutation	C	T	p.W309*
SKCM	TCGA-EE-A2GH-06	SLC13A3	ENST00000472148.1,ENST00000396360.1	chr20	45212210:45212308:45217798:45217894:45221042:45221085,	45217799	45217894	45217888	45217888	Nonsense_Mutation	C	T	p.W309*
SKCM	TCGA-EE-A2GH-06	FAM221A	ENST00000409192.3,ENST00000409994.3	chr7	23728887:23729078:23731008:23731215:23740404:23740487,	23731009	23731215	23731110	23731110	Nonsense_Mutation	C	T	p.Q178*
SKCM	TCGA-EE-A2GR-06	TARS2	ENST00000438568.2,ENST00000369064.3,ENST00000463555.1,ENST00000369051.3,ENST00000606933.1,ENST00000369054.2,ENST00000480070.1,ENST00000467982.2	chr1	150470977:150471140:150471372:150471510:150471691:150471711,	150471373	150471510	150471388	150471388	Nonsense_Mutation	C	T	p.Q473*
SKCM	TCGA-EE-A2GR-06	ETNPPL	ENST00000509402.1	chr4	109677573:109677648:109680904:109681064:109681343:109681462,109677597:109677648:109680904:109681064:109683998:109684085,	109680905	109681064	109680996	109680996	Nonsense_Mutation	G	A	p.R82*
SKCM	TCGA-EE-A2GR-06	ETNPPL	ENST00000411864.2	chr4	109677573:109677648:109680904:109681046:109681343:109681462,	109680905	109681046	109680996	109680996	Nonsense_Mutation	G	A	p.R82*
SKCM	TCGA-EE-A2GR-06	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41347444:41347562:41348819:41348904:41350836:41350979,	41348820	41348904	41348837	41348837	Nonsense_Mutation	G	A	p.Q685*
SKCM	TCGA-EE-A2GR-06	RWDD1	ENST00000518117.1,ENST00000392526.1,ENST00000468204.2,ENST00000368590.5,ENST00000487832.2,ENST00000466444.2	chr6	116901457:116901523:116905889:116906020:116910004:116910148,	116905890	116906020	116905895	116905895	Nonsense_Mutation	C	T	p.Q49*
SKCM	TCGA-EE-A2GR-06	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000433979.1	chr12	18544055:18544186:18552592:18552781:18573874:18573968,	18552593	18552781	18552692	18552692	Nonsense_Mutation	G	A	p.W701*
SKCM	TCGA-EE-A2GR-06	UBXN11	ENST00000494942.1	chr1	26612433:26612528:26620695:26620822:26633082:26633100,26612433:26612528:26620695:26620822:26623409:26623486,26612433:26612528:26620695:26620822:26623917:26623972,	26620696	26620822	26620703	26620703	Nonsense_Mutation	C	T	p.W184*
SKCM	TCGA-EE-A2GR-06	USP5	ENST00000229268.8,ENST00000537267.1,ENST00000389231.5	chr12	6967587:6967781:6968633:6968705:6969314:6969402,	6968634	6968705	6968686	6968686	Nonsense_Mutation	C	T	p.Q371*
SKCM	TCGA-EE-A2GR-06	CTSC	ENST00000527018.1,ENST00000227266.5	chr11	88029326:88029432:88033697:88033813:88042330:88042486,	88033698	88033813	88033707	88033707	Nonsense_Mutation	G	A	p.R250*
SKCM	TCGA-EE-A2GR-06	DNAJB11	ENST00000439351.1,ENST00000265028.3	chr3	186295456:186295589:186299159:186299302:186299783:186299866,	186299160	186299302	186299259	186299259	Nonsense_Mutation	C	T	p.Q186*
SKCM	TCGA-EE-A2GR-06	COL24A1	ENST00000436319.1,ENST00000426639.1,ENST00000370571.2	chr1	86195764:86196375:86200431:86200647:86203078:86203188,	86200432	86200647	86200455	86200455	Nonsense_Mutation	T	A	p.K1659*
SKCM	TCGA-EE-A2GR-06	ABCC12	ENST00000534418.1,ENST00000448542.1,ENST00000532494.1,ENST00000529504.1,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48125030:48125120:48130656:48130843:48134782:48134920,	48130657	48130843	48130780	48130780	Nonsense_Mutation	C	T	p.W1024*
SKCM	TCGA-EE-A2GR-06	CLEC5A	ENST00000438351.1,ENST00000551012.2	chr7	141631566:141631626:141635613:141635750:141643695:141643764,141631566:141631626:141635613:141635750:141645140:141645200,	141635614	141635750	141635724	141635724	Nonsense_Mutation	G	A	p.Q79*
SKCM	TCGA-EE-A2GR-06	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110085864	110085864	Nonsense_Mutation	C	T	p.R74*
SKCM	TCGA-EE-A2GR-06	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31138274	31138274	Nonsense_Mutation	G	A	p.Q305*
SKCM	TCGA-EE-A2GR-06	KLF6	ENST00000497571.1	chr10	3821741:3821782:3822297:3822421:3823986:3824243,3821741:3821782:3822297:3822421:3823832:3824406,	3822298	3822421	3822344	3822344	Nonsense_Mutation	G	A	p.R252*
SKCM	TCGA-EE-A2GR-06	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415737	86415737	Nonsense_Mutation	G	A	p.W210*
SKCM	TCGA-EE-A2GR-06	ERLIN2	ENST00000519638.1,ENST00000521644.1,ENST00000276461.5	chr8	37609143:37609233:37610967:37611047:37611432:37611629,	37610968	37611047	37611017	37611017	Nonsense_Mutation	C	A	p.Y263*
SKCM	TCGA-EE-A2GR-06	FARSA	ENST00000586280.1	chr19	13041036:13041155:13041242:13041563:13044363:13044494,	13041243	13041563	13041248	13041248	Nonsense_Mutation	G	A	p.R167*
SKCM	TCGA-EE-A2GR-06	FARSA	ENST00000588965.1,ENST00000314606.4,ENST00000423140.2,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13041036:13041155:13041242:13041341:13041425:13041563,	13041243	13041341	13041248	13041248	Nonsense_Mutation	G	A	p.R167*
SKCM	TCGA-EE-A2GR-06	NGLY1	ENST00000467224.1	chr3	25760901:25761126:25761620:25761682:25770623:25770807,	25761621	25761682	25761670	25761670	Nonsense_Mutation	G	A	p.R524*
SKCM	TCGA-EE-A2GR-06	NGLY1	ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9,ENST00000496726.1	chr3	25760901:25761126:25761504:25761682:25770623:25770807,	25761505	25761682	25761670	25761670	Nonsense_Mutation	G	A	p.R524*
SKCM	TCGA-XV-AAZV-01	EDNRA	ENST00000511804.1,ENST00000324300.5	chr4	148441002:148441130:148453657:148453856:148457028:148457181,	148453658	148453856	148453679	148453679	Nonsense_Mutation	G	A	p.W190*
SKCM	TCGA-EE-A3AH-06	MGST1	ENST00000543076.1	chr12	16500627:16500644:16510538:16510633:16520258:16520399,16507299:16507312:16510538:16510633:16516728:16516740,16507164:16507312:16510538:16510633:16536440:16536538,16507164:16507312:16510538:16510633:16520258:16520399,16507171:16507204:16510538:16510633:16516728:16516740,	16510539	16510633	16510602	16510602	Nonsense_Mutation	C	T	p.R64*
SKCM	TCGA-EE-A3AH-06	RARRES2	ENST00000467793.1,ENST00000466675.1,ENST00000482669.1,ENST00000223271.3	chr7	150036074:150036170:150037188:150037293:150037524:150037566,	150037189	150037293	150037221	150037221	Nonsense_Mutation	T	A	p.K83*
SKCM	TCGA-EE-A3AH-06	F9	ENST00000394090.2	chrX	138623245:138623348:138630521:138630650:138633220:138633406,138619520:138619545:138630521:138630650:138633220:138633406,	138630522	138630650	138630614	138630614	Nonsense_Mutation	C	T	p.R162*
SKCM	TCGA-DA-A960-01	FIG4	ENST00000230124.3,ENST00000454215.1	chr6	110036280:110036379:110037647:110037771:110048311:110048468,	110037648	110037771	110037744	110037744	Nonsense_Mutation	C	T	p.R88*
SKCM	TCGA-DA-A960-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56699214	56699214	Nonsense_Mutation	C	T	p.Q253*
SKCM	TCGA-DA-A960-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547898	19547898	Nonsense_Mutation	C	T	p.Q303*
SKCM	TCGA-DA-A960-01	STIL	ENST00000371877.3,ENST00000360380.3,ENST00000337817.5,ENST00000396221.2,ENST00000243182.6	chr1	47716293:47717594:47725960:47726211:47728574:47728734,	47725961	47726211	47726118	47726118	Nonsense_Mutation	G	A	p.Q974*
SKCM	TCGA-DA-A960-01	EVI5	ENST00000543509.1,ENST00000491940.1,ENST00000370331.1,ENST00000540033.1	chr1	93070863:93070959:93073137:93073284:93089732:93089891,	93073138	93073284	93073260	93073260	Nonsense_Mutation	G	A	p.R602*
SKCM	TCGA-DA-A960-01	SH2D3A	ENST00000597687.1,ENST00000245908.6,ENST00000595681.1,ENST00000595369.1	chr19	6759604:6759681:6760648:6760998:6763690:6763827,	6760649	6760998	6760833	6760833	Nonsense_Mutation	G	A	p.Q79*
SKCM	TCGA-EE-A3AE-06	CHRFAM7A	ENST00000397827.3,ENST00000401522.3,ENST00000299847.2	chr15	30654260:30655014:30659620:30659730:30663300:30663387,	30659621	30659730	30659728	30659728	Nonsense_Mutation	G	A	p.Q114*
SKCM	TCGA-EE-A3AE-06	SMS	ENST00000379404.1	chrX	21958895:21958991:21985313:21985434:21995178:21995354,	21985314	21985434	21985355	21985355	Nonsense_Mutation	C	T	p.Q31*
SKCM	TCGA-EE-A3AE-06	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38913242:38913364:38917227:38917346:38919093:38919296,	38917228	38917346	38917251	38917251	Nonsense_Mutation	G	A	p.W3834*
SKCM	TCGA-EE-A3AE-06	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151832	31151832	Nonsense_Mutation	C	T	p.W716*
SKCM	TCGA-EE-A3AE-06	GOLGA4	ENST00000361924.2,ENST00000437131.1	chr3	37376543:37376657:37379156:37379225:37381614:37381690,37378633:37378654:37379156:37379225:37381614:37381690,	37379157	37379225	37379169	37379169	Nonsense_Mutation	C	T	p.Q2114*
SKCM	TCGA-EE-A3AE-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
SKCM	TCGA-EE-A3AE-06	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411902:116412043:116414934:116415165:116417442:116417523,	116414935	116415165	116414937	116414937	Nonsense_Mutation	C	T	p.Q1011*
SKCM	TCGA-EE-A3AE-06	CTNNBL1	ENST00000361383.6,ENST00000373469.1,ENST00000405275.2,ENST00000473857.1,ENST00000373473.1	chr20	36406055:36406114:36407588:36407737:36431268:36431450,	36407589	36407737	36407715	36407715	Nonsense_Mutation	C	T	p.Q310*
SKCM	TCGA-EE-A3AE-06	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000520845.1,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95866032:95866143:95869004:95869206:95871738:95871860,	95869005	95869206	95869077	95869077	Nonsense_Mutation	C	T	p.Q609*
SKCM	TCGA-D3-A8GP-06	DDR2	ENST00000446985.1,ENST00000367921.3,ENST00000415555.1	chr1	162625000:162625164:162688826:162688935:162722884:162722987,	162688827	162688935	162688923	162688923	Nonsense_Mutation	C	T	p.Q24*
SKCM	TCGA-D3-A8GP-06	SIGLEC7	ENST00000317643.6	chr19	51645626:51646059:51647662:51647941:51648168:51648216,	51647663	51647941	51647745	51647745	Nonsense_Mutation	G	A	p.W172*
SKCM	TCGA-D3-A8GP-06	CAMTA1	ENST00000439411.2,ENST00000495233.1,ENST00000303635.7	chr1	7797314:7797630:7798018:7798542:7804894:7805082,	7798019	7798542	7798291	7798291	Nonsense_Mutation	C	T	p.Q1311*
SKCM	TCGA-D3-A8GP-06	ADAM18	ENST00000379866.1,ENST00000265707.5	chr8	39467003:39467080:39468047:39468225:39486892:39486958,	39468048	39468225	39468127	39468127	Nonsense_Mutation	C	T	p.Q142*
SKCM	TCGA-D3-A8GP-06	TTYH1	ENST00000425969.1	chr19	54926780:54926852:54930301:54930480:54932450:54932517,54926780:54926852:54930301:54930480:54933363:54933422,	54930302	54930480	54930339	54930339	Nonsense_Mutation	T	A	p.L55*
SKCM	TCGA-D3-A8GP-06	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540311	187540311	Nonsense_Mutation	G	A	p.Q2477*
SKCM	TCGA-D3-A8GP-06	B4GALT4	ENST00000483209.1,ENST00000359213.3,ENST00000393765.2,ENST00000467604.1	chr3	118935086:118935191:118937496:118937619:118942904:118943092,	118937497	118937619	118937526	118937526	Nonsense_Mutation	C	T	p.W256*
SKCM	TCGA-D3-A8GP-06	SAMHD1	ENST00000262878.4	chr20	35518631:35521469:35526224:35526362:35526842:35526947,	35526225	35526362	35526320	35526320	Nonsense_Mutation	G	A	p.R551*
SKCM	TCGA-D3-A8GP-06	NKAIN3	ENST00000523367.1,ENST00000519049.1,ENST00000328472.5,ENST00000523211.1	chr8	63492097:63492235:63502272:63502353:63659490:63659601,	63502273	63502353	63502283	63502283	Nonsense_Mutation	G	A	p.W68*
SKCM	TCGA-D3-A8GP-06	B4GALT4	ENST00000483209.1,ENST00000359213.3,ENST00000393765.2,ENST00000467604.1	chr3	118935086:118935191:118937496:118937619:118942904:118943092,	118937497	118937619	118937527	118937527	Nonsense_Mutation	C	T	p.W256*
SKCM	TCGA-EB-A553-01	NAA16	ENST00000379406.3,ENST00000463114.1,ENST00000497143.1	chr13	41941574:41941788:41943225:41943419:41946338:41946447,	41943226	41943419	41943342	41943342	Nonsense_Mutation	C	T	p.Q624*
SKCM	TCGA-EB-A553-01	REPS1	ENST00000409812.2,ENST00000367663.4,ENST00000450536.2,ENST00000258062.5,ENST00000415951.2,ENST00000529597.1,ENST00000431346.2	chr6	139264649:139264713:139264989:139265152:139265634:139265682,	139264990	139265152	139265137	139265137	Nonsense_Mutation	G	A	p.R257*
SKCM	TCGA-EB-A553-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557689	210557689	Nonsense_Mutation	G	A	p.W265*
SKCM	TCGA-EB-A553-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557689	210557689	Nonsense_Mutation	G	A	p.W265*
SKCM	TCGA-EB-A553-01	HDAC4	ENST00000543185.1,ENST00000463007.1,ENST00000345617.3	chr2	240036748:240037006:240048151:240048375:240055940:240056139,	240048152	240048375	240048223	240048223	Nonsense_Mutation	G	A	p.Q483*
SKCM	TCGA-EB-A553-01	HDAC4	ENST00000541256.1,ENST00000535493.1,ENST00000493582.1	chr2	240036748:240037006:240048151:240048390:240055940:240056139,	240048152	240048390	240048223	240048223	Nonsense_Mutation	G	A	p.Q483*
SKCM	TCGA-EB-A553-01	DNAJC21	ENST00000303525.7,ENST00000382021.2	chr5	34929697:34930021:34933919:34934013:34935814:34935938,	34933920	34934013	34933922	34933922	Nonsense_Mutation	A	T	p.K34*
SKCM	TCGA-EB-A553-01	UBXN2A	ENST00000535786.1,ENST00000309033.4,ENST00000404924.1	chr2	24181170:24181225:24194145:24194284:24199838:24199945,	24194146	24194284	24194228	24194228	Nonsense_Mutation	G	T	p.E42*
SKCM	TCGA-GN-A8LK-06	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1703376	1703376	Nonsense_Mutation	C	A	p.E438*
SKCM	TCGA-GN-A8LK-06	FASTKD2	ENST00000487777.1	chr2	207630155:207630471:207631367:207632194:207634814:207634918,207630370:207630378:207631367:207632194:207634814:207634918,	207631368	207632194	207632153	207632153	Nonsense_Mutation	C	T	p.Q246*
SKCM	TCGA-GN-A8LK-06	FRAS1	ENST00000264895.6,ENST00000325942.6,ENST00000264899.6	chr4	78987138:78987170:79158663:79158771:79166386:79166479,	79158664	79158771	79158678	79158678	Nonsense_Mutation	G	A	p.W41*
SKCM	TCGA-GN-A8LK-06	ATF6B	ENST00000495579.1,ENST00000375203.3,ENST00000485314.1,ENST00000375201.4	chr6	32088547:32088679:32088765:32088901:32089039:32089125,	32088766	32088901	32088802	32088802	Nonsense_Mutation	G	A	p.Q219*
SKCM	TCGA-GN-A8LK-06	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189854121:189854175:189854821:189854875:189855032:189855086,	189854822	189854875	189854855	189854855	Nonsense_Mutation	C	T	p.R242*
SKCM	TCGA-GN-A8LK-06	PGM3	ENST00000505470.1	chr6	83898463:83898517:83900527:83900733:83902897:83902950,83898463:83898517:83900527:83900733:83900905:83901042,83898332:83898513:83900527:83900733:83902897:83902950,	83900528	83900733	83900647	83900647	Nonsense_Mutation	G	A	p.R29*
SKCM	TCGA-GN-A8LK-06	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920788	107920788	Nonsense_Mutation	C	T	p.R136*
SKCM	TCGA-GN-A8LK-06	CCDC83	ENST00000526729.1,ENST00000376067.1	chr11	85584273:85584338:85593555:85593718:85606335:85606427,	85593556	85593718	85593574	85593574	Nonsense_Mutation	G	T	p.E67*
SKCM	TCGA-GN-A8LK-06	CYP11B1	ENST00000517471.1,ENST00000377675.3,ENST00000292427.4	chr8	143957127:143957294:143957656:143957811:143958097:143958301,	143957657	143957811	143957797	143957797	Nonsense_Mutation	G	A	p.Q272*
SKCM	TCGA-GN-A8LK-06	SLC10A7	ENST00000394059.4,ENST00000335472.7,ENST00000432059.2,ENST00000507030.1,ENST00000511315.1,ENST00000394062.3	chr4	147425000:147425076:147431064:147431201:147438189:147438272,	147431065	147431201	147431156	147431156	Nonsense_Mutation	G	A	p.Q77*
SKCM	TCGA-GN-A8LK-06	USP47	ENST00000399455.2,ENST00000539466.1,ENST00000527733.1,ENST00000339865.5	chr11	11952242:11952298:11954550:11954663:11955377:11955482,	11954551	11954663	11954640	11954640	Nonsense_Mutation	G	T	p.E513*
SKCM	TCGA-GN-A8LK-06	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579349	82579349	Nonsense_Mutation	G	A	p.Q3519*
SKCM	TCGA-GN-A8LK-06	HAO2	ENST00000325945.3,ENST00000361035.4	chr1	119927473:119927676:119929244:119929454:119934732:119934891,	119929245	119929454	119929329	119929329	Nonsense_Mutation	C	T	p.R229*
SKCM	TCGA-GN-A8LK-06	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381214	109381214	Nonsense_Mutation	C	T	p.R1407*
SKCM	TCGA-GN-A8LK-06	SDR16C5	ENST00000396721.2,ENST00000303749.3	chr8	57213859:57214132:57218155:57218281:57219234:57219379,	57218156	57218281	57218183	57218183	Nonsense_Mutation	A	T	p.L226*
SKCM	TCGA-GN-A8LK-06	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141292785:141292909:141295841:141295948:141299209:141299287,	141295842	141295948	141295856	141295856	Nonsense_Mutation	C	T	p.Q500*
SKCM	TCGA-GN-A8LK-06	ATRNL1	ENST00000355044.3	chr10	117061482:117061553:117075027:117075246:117093791:117093929,	117075028	117075246	117075237	117075237	Nonsense_Mutation	C	T	p.Q1010*
SKCM	TCGA-GN-A8LK-06	DNAH5	ENST00000265104.4,ENST00000508040.1	chr5	13913851:13914067:13914628:13914751:13916456:13916564,	13914629	13914751	13914686	13914686	Nonsense_Mutation	C	T	p.W421*
SKCM	TCGA-GN-A8LK-06	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169354160:169354266:169362487:169362643:169369788:169369930,	169362488	169362643	169362592	169362592	Nonsense_Mutation	C	T	p.W397*
SKCM	TCGA-GN-A8LK-06	GPR161	ENST00000361697.2,ENST00000537209.1,ENST00000271357.5,ENST00000367835.1,ENST00000367838.1,ENST00000493800.1	chr1	168059801:168059906:168065745:168066470:168073714:168074132,	168065746	168066470	168066076	168066076	Nonsense_Mutation	G	A	p.Q257*
SKCM	TCGA-GN-A8LK-06	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000399200.2,ENST00000466493.1,ENST00000602465.1	chr10	70152894:70152960:70153831:70153893:70154084:70154208,	70153832	70153893	70153867	70153867	Nonsense_Mutation	A	T	p.Y218*
SKCM	TCGA-GN-A8LK-06	LRTM1	ENST00000493075.1	chr3	54952359:54952919:54958645:54959242:55000954:55001115,	54958646	54959242	54958704	54958704	Nonsense_Mutation	C	T	p.W182*
SKCM	TCGA-GN-A8LK-06	SLC8A3	ENST00000356921.2	chr14	70518706:70518831:70527552:70527656:70546681:70546897,70518706:70518831:70527552:70527656:70633355:70635201,	70527553	70527656	70527572	70527572	Nonsense_Mutation	C	T	p.W623*
SKCM	TCGA-D3-A51E-06	PDZD4	ENST00000544474.1,ENST00000164640.4,ENST00000393758.2,ENST00000484792.1	chrX	153070333:153070355:153070551:153070662:153070959:153071061,	153070552	153070662	153070593	153070593	Nonsense_Mutation	C	A	p.E241*
SKCM	TCGA-D3-A51E-06	PCSK6	ENST00000561444.1,ENST00000348070.1,ENST00000331826.7,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000558716.1,ENST00000398185.2,ENST00000560921.1,ENST00000344273.2,ENST00000560271.1,ENST00000398181.2,ENST00000559417.1,ENST00000559678.1	chr15	101929668:101929769:101933416:101933629:101938608:101938781,	101933417	101933629	101933623	101933623	Nonsense_Mutation	G	A	p.Q334*
SKCM	TCGA-D3-A51E-06	COCH	ENST00000396618.3,ENST00000553772.1	chr14	31343764:31343797:31344121:31344178:31344261:31344309,	31344122	31344178	31344159	31344159	Nonsense_Mutation	G	A	p.W5*
SKCM	TCGA-D3-A51E-06	MEN1	ENST00000337652.1,ENST00000377326.3,ENST00000377313.1,ENST00000478548.1,ENST00000443283.1,ENST00000394374.2,ENST00000377321.1,ENST00000312049.6,ENST00000315422.4,ENST00000394376.1	chr11	64571846:64572288:64572505:64572670:64573106:64573242,	64572506	64572670	64572586	64572586	Nonsense_Mutation	C	A	p.E429*
SKCM	TCGA-EB-A431-01	AMDHD2	ENST00000568263.1,ENST00000413459.3	chr16	2578994:2579096:2579475:2579526:2580257:2580492,	2579476	2579526	2579508	2579508	Nonsense_Mutation	C	T	p.Q422*
SKCM	TCGA-EB-A431-01	PRDX1	ENST00000262746.1,ENST00000372079.1,ENST00000319248.8	chr1	45977004:45977086:45980178:45980309:45980544:45980567,	45980179	45980309	45980212	45980212	Nonsense_Mutation	G	A	p.Q161*
SKCM	TCGA-EB-A431-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30740286:30740552:30740690:30740893:30744600:30744770,	30740691	30740893	30740881	30740881	Nonsense_Mutation	C	T	p.Q2039*
SKCM	TCGA-EB-A431-01	SACM1L	ENST00000455997.1	chr3	45773544:45773643:45776737:45776865:45779074:45779144,	45776738	45776865	45776851	45776851	Nonsense_Mutation	C	T	p.Q409*
SKCM	TCGA-EB-A431-01	SACM1L	ENST00000389061.5,ENST00000541314.1,ENST00000433336.1,ENST00000441228.1,ENST00000418611.1	chr3	45773544:45773643:45776726:45776865:45779074:45779144,	45776727	45776865	45776851	45776851	Nonsense_Mutation	C	T	p.Q409*
SKCM	TCGA-EB-A431-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100403784:100403932:100443764:100443892:100454628:100454639,	100443765	100443892	100443865	100443865	Nonsense_Mutation	G	A	p.W1061*
SKCM	TCGA-EB-A431-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635443	33635443	Nonsense_Mutation	C	T	p.Q743*
SKCM	TCGA-EB-A431-01	TLE2	ENST00000591529.1,ENST00000426948.2	chr19	3000644:3000721:3002350:3002501:3005434:3005582,2997921:2997953:3002350:3002501:3005434:3005582,	3002351	3002501	3002450	3002450	Nonsense_Mutation	C	A	p.E650*
SKCM	TCGA-EB-A431-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
SKCM	TCGA-EB-A431-01	AMOTL2	ENST00000506326.1,ENST00000422605.2,ENST00000514516.1,ENST00000249883.5,ENST00000513145.1	chr3	134080353:134080649:134084658:134084751:134085124:134085269,	134084659	134084751	134084701	134084701	Nonsense_Mutation	G	A	p.Q471*
SKCM	TCGA-EB-A431-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4,ENST00000538146.1	chr10	29770512:29770657:29773584:29773760:29775013:29775159,	29773585	29773760	29773697	29773697	Nonsense_Mutation	G	A	p.Q1615*
SKCM	TCGA-EB-A431-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699077	17699077	Nonsense_Mutation	C	T	p.Q939*
SKCM	TCGA-EB-A431-01	FCAR	ENST00000391725.3,ENST00000345937.4,ENST00000355524.3,ENST00000469767.1	chr19	55385745:55385779:55386785:55386821:55396646:55396937,	55386786	55386821	55386809	55386809	Nonsense_Mutation	C	T	p.Q20*
SKCM	TCGA-EE-A2GT-06	CPT1C	ENST00000323446.5,ENST00000598259.1,ENST00000595031.1,ENST00000354199.5,ENST00000599023.1,ENST00000596701.1,ENST00000405931.2,ENST00000392518.4,ENST00000598293.1,ENST00000295404.5	chr19	50210774:50210880:50211979:50212096:50213576:50213741,	50211980	50212096	50212081	50212081	Nonsense_Mutation	G	A	p.W517*
SKCM	TCGA-EE-A2GT-06	LRRC23	ENST00000007969.8,ENST00000431207.1,ENST00000451681.1,ENST00000443597.2	chr12	7016485:7016609:7019053:7019190:7021893:7021975,	7019054	7019190	7019057	7019057	Nonsense_Mutation	C	T	p.Q209*
SKCM	TCGA-EE-A2GT-06	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63300446:63300523:63307098:63307218:63329662:63331184,	63307099	63307218	63307135	63307135	Nonsense_Mutation	C	T	p.R376*
SKCM	TCGA-EE-A2GT-06	TRIT1	ENST00000541099.1	chr1	40309867:40309890:40310202:40310312:40312891:40312969,40309867:40309890:40310202:40310312:40348989:40349106,	40310203	40310312	40310205	40310205	Nonsense_Mutation	G	A	p.Q372*
SKCM	TCGA-EE-A2GT-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
SKCM	TCGA-W3-AA1V-06	PI16	ENST00000491324.1	chr6	36930765:36930809:36931598:36931738:36932161:36932443,	36931599	36931738	36931663	36931663	Nonsense_Mutation	G	A	p.W445*
SKCM	TCGA-W3-AA1V-06	TRIM3	ENST00000345851.3,ENST00000359518.3,ENST00000537602.1,ENST00000525074.1,ENST00000536344.1	chr11	6472121:6472290:6472500:6472668:6477301:6477374,	6472501	6472668	6472626	6472626	Nonsense_Mutation	G	A	p.R526*
SKCM	TCGA-W3-AA1V-06	SCD	ENST00000370355.2	chr10	102107820:102108103:102112122:102112253:102114183:102114389,	102112123	102112253	102112181	102112181	Nonsense_Mutation	G	A	p.W123*
SKCM	TCGA-W3-AA1V-06	LNPEP	ENST00000231368.5,ENST00000395770.3	chr5	96360224:96360386:96362320:96362461:96363436:96363518,	96362321	96362461	96362355	96362355	Nonsense_Mutation	C	T	p.R920*
SKCM	TCGA-W3-AA1V-06	SLC47A1	ENST00000575377.1,ENST00000573009.1,ENST00000497548.1,ENST00000270570.4,ENST00000395585.1,ENST00000457293.1	chr17	19470451:19470541:19474790:19474885:19476092:19476174,	19474791	19474885	19474867	19474867	Nonsense_Mutation	G	A	p.W462*
SKCM	TCGA-W3-AA1V-06	TMEM26	ENST00000503886.1	chr10	63166400:63166873:63169206:63170504:63173216:63173293,	63169207	63170504	63170337	63170337	Nonsense_Mutation	G	A	p.Q284*
SKCM	TCGA-W3-AA1V-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101011	168101011	Nonsense_Mutation	C	T	p.Q1037*
SKCM	TCGA-W3-AA1V-06	THBS2	ENST00000366787.3	chr6	169646291:169646376:169648511:169649068:169650827:169650901,	169648512	169649068	169648675	169648675	Nonsense_Mutation	C	T	p.W149*
SKCM	TCGA-W3-AA1V-06	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82125970	82125970	Nonsense_Mutation	G	A	p.Q78*
SKCM	TCGA-W3-AA1V-06	HID1	ENST00000425042.2,ENST00000525128.1,ENST00000534480.1	chr17	72959865:72960005:72960577:72960727:72968685:72968811,	72960578	72960727	72960694	72960694	Nonsense_Mutation	G	A	p.Q34*
SKCM	TCGA-W3-AA1V-06	KLF12	ENST00000377669.2,ENST00000377666.4	chr13	74339074:74339137:74387288:74387424:74419963:74420510,	74387289	74387424	74387410	74387410	Nonsense_Mutation	G	A	p.R229*
SKCM	TCGA-W3-AA1V-06	PREX2	ENST00000529398.1,ENST00000517617.1,ENST00000288368.4	chr8	69002813:69002950:69005839:69005957:69009251:69009436,	69005840	69005957	69005857	69005857	Nonsense_Mutation	G	A	p.W756*
SKCM	TCGA-W3-AA1V-06	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086302	109086302	Nonsense_Mutation	C	T	p.Q173*
SKCM	TCGA-W3-AA1V-06	OSMR	ENST00000274276.3	chr5	38885450:38885586:38886140:38886292:38903983:38904126,	38886141	38886292	38886289	38886289	Nonsense_Mutation	C	T	p.R330*
SKCM	TCGA-W3-AA1V-06	CPEB3	ENST00000412050.4,ENST00000265997.4	chr10	93841076:93841258:93851586:93851701:93870832:93870951,	93851587	93851701	93851593	93851593	Nonsense_Mutation	G	A	p.R547*
SKCM	TCGA-W3-AA1V-06	SPOPL	ENST00000280098.4	chr2	139308543:139308624:139310123:139310251:139316591:139316769,	139310124	139310251	139310141	139310141	Nonsense_Mutation	C	T	p.R124*
SKCM	TCGA-W3-AA1V-06	GUSB	ENST00000304895.4,ENST00000345660.6,ENST00000478118.1	chr7	65444464:65444528:65444713:65444898:65445210:65445392,	65444714	65444898	65444796	65444796	Nonsense_Mutation	G	A	p.R167*
SKCM	TCGA-W3-AA1V-06	PLCB4	ENST00000378473.3,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9343542:9343622:9346107:9346161:9351860:9351942,	9346108	9346161	9346111	9346111	Nonsense_Mutation	G	A	p.W151*
SKCM	TCGA-W3-AA1V-06	OFCC1	ENST00000460066.1,ENST00000316020.6,ENST00000491508.1,ENST00000466385.1,ENST00000460363.2,ENST00000492094.2,ENST00000472329.1	chr6	9933002:9933179:9933474:9933541:9939521:9939552,	9933475	9933541	9933535	9933535	Nonsense_Mutation	G	A	p.Q75*
SKCM	TCGA-W3-AA1V-06	SULT2B1	ENST00000323090.4,ENST00000201586.2	chr19	49079197:49079340:49090485:49090694:49094865:49094992,	49090486	49090694	49090544	49090544	Nonsense_Mutation	G	A	p.W76*
SKCM	TCGA-W3-AA1V-06	PGD	ENST00000538557.1,ENST00000498356.1,ENST00000270776.8,ENST00000541529.1	chr1	10477432:10477566:10478882:10478982:10479473:10479596,	10478883	10478982	10478932	10478932	Nonsense_Mutation	C	T	p.Q374*
SKCM	TCGA-W3-AA1V-06	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231102927:231103096:231106118:231106202:231108445:231108526,	231106119	231106202	231106142	231106142	Nonsense_Mutation	C	T	p.Q144*
SKCM	TCGA-W3-AA1V-06	STAB1	ENST00000321725.6	chr3	52545665:52545761:52546356:52546452:52546611:52546659,	52546357	52546452	52546384	52546384	Nonsense_Mutation	C	T	p.Q971*
SKCM	TCGA-W3-AA1V-06	DENND1C	ENST00000543576.1,ENST00000590818.1,ENST00000590867.1,ENST00000381480.2	chr19	6470305:6470377:6471275:6471316:6471416:6471507,	6471276	6471316	6471308	6471308	Nonsense_Mutation	G	A	p.R420*
SKCM	TCGA-W3-AA1V-06	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463084	5463084	Nonsense_Mutation	A	T	p.L311*
SKCM	TCGA-W3-AA1V-06	BLNK	ENST00000427367.2,ENST00000371176.2,ENST00000472763.1,ENST00000413476.2,ENST00000224337.5	chr10	97976408:97976490:97983581:97983745:97987165:97987253,	97983582	97983745	97983740	97983740	Nonsense_Mutation	G	A	p.R123*
SKCM	TCGA-W3-AA1V-06	GSDMC	ENST00000522273.1,ENST00000276708.4	chr8	130761697:130761771:130762235:130762365:130762676:130762816,	130762236	130762365	130762305	130762305	Nonsense_Mutation	G	A	p.Q382*
SKCM	TCGA-W3-AA1V-06	TTC7B	ENST00000357056.2,ENST00000328459.6	chr14	91161843:91161922:91196418:91196540:91211135:91211266,	91196419	91196540	91196450	91196450	Nonsense_Mutation	G	A	p.Q223*
SKCM	TCGA-W3-AA1V-06	PLEKHB2	ENST00000409158.1	chr2	131888293:131888333:131890474:131890588:131897739:131897848,	131890475	131890588	131890586	131890586	Nonsense_Mutation	C	T	p.Q149*
SKCM	TCGA-W3-AA1V-06	GGA3	ENST00000582717.1,ENST00000538886.1,ENST00000245541.6,ENST00000537584.2,ENST00000584978.1,ENST00000582486.1,ENST00000582200.1,ENST00000578348.1,ENST00000351904.7	chr17	73234994:73235164:73235455:73235652:73235869:73236189,	73235456	73235652	73235534	73235534	Nonsense_Mutation	G	A	p.Q568*
SKCM	TCGA-W3-AA1V-06	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9577061:9577189:9583114:9583273:9584512:9584578,	9583115	9583273	9583228	9583228	Nonsense_Mutation	G	A	p.R269*
SKCM	TCGA-W3-AA1V-06	SLCO1C1	ENST00000266509.2,ENST00000545604.1,ENST00000540354.1,ENST00000381552.1	chr12	20848683:20848741:20852485:20852639:20854251:20854393,	20852486	20852639	20852529	20852529	Nonsense_Mutation	G	T	p.E7*
SKCM	TCGA-W3-AA1V-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
SKCM	TCGA-W3-AA1V-06	PLVAP	ENST00000252590.4	chr19	17471580:17471641:17476094:17476807:17476907:17476960,	17476095	17476807	17476340	17476340	Nonsense_Mutation	G	A	p.Q312*
SKCM	TCGA-W3-AA1V-06	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20107819	20107819	Nonsense_Mutation	A	T	p.K72*
SKCM	TCGA-W3-AA1V-06	FMO3	ENST00000472784.1,ENST00000478457.1,ENST00000542847.1	chr1	171061793:171061931:171072925:171073114:171076815:171076878,171070220:171070347:171072925:171073114:171076815:171076878,	171072926	171073114	171073055	171073055	Nonsense_Mutation	C	T	p.Q88*
SKCM	TCGA-W3-AA1V-06	MMP26	ENST00000300762.1,ENST00000380390.1	chr11	5009499:5009540:5010877:5011098:5011827:5011976,	5010878	5011098	5011074	5011074	Nonsense_Mutation	G	A	p.W99*
SKCM	TCGA-W3-AA1V-06	EPHB4	ENST00000478459.1,ENST00000487222.1,ENST00000358173.3,ENST00000360620.3	chr7	100404041:100404191:100404986:100405202:100410368:100410406,	100404987	100405202	100405034	100405034	Nonsense_Mutation	G	A	p.R763*
SKCM	TCGA-W3-AA1V-06	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92471337	92471337	Nonsense_Mutation	G	A	p.Q995*
SKCM	TCGA-W3-AA1V-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-W3-AA1V-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-W3-AA1V-06	RANBP9	ENST00000539980.1,ENST00000011619.3	chr6	13642710:13642823:13644776:13644961:13652890:13652913,	13644777	13644961	13644826	13644826	Nonsense_Mutation	G	A	p.R355*
SKCM	TCGA-W3-AA1V-06	LEPR	ENST00000349533.6	chr1	66087035:66087141:66088588:66088664:66098834:66101111,66087035:66087141:66088588:66088664:66095884:66096105,66087035:66087141:66088588:66088664:66101873:66102785,	66088589	66088664	66088659	66088659	Nonsense_Mutation	C	T	p.Q890*
SKCM	TCGA-W3-AA1V-06	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288131	74288131	Nonsense_Mutation	G	A	p.Q727*
SKCM	TCGA-W3-AA1V-06	SSSCA1	ENST00000533115.1	chr11	65338356:65338441:65338861:65339250:65339913:65340363,	65338862	65339250	65338939	65338939	Nonsense_Mutation	C	T	p.R75*
SKCM	TCGA-W3-AA1V-06	ANKRA2	ENST00000296785.3	chr5	72850146:72850213:72850685:72850811:72851312:72851410,	72850686	72850811	72850781	72850781	Nonsense_Mutation	G	A	p.R215*
SKCM	TCGA-W3-AA1V-06	SLC38A10	ENST00000542075.1,ENST00000374759.3	chr17	79220684:79220858:79225292:79225412:79225994:79226072,79220684:79220861:79225292:79225412:79225994:79226042,	79225293	79225412	79225329	79225329	Nonsense_Mutation	G	A	p.R677*
SKCM	TCGA-W3-AA1V-06	VSTM4	ENST00000332853.4	chr10	50256522:50256629:50272747:50272781:50285263:50285336,	50272748	50272781	50272755	50272755	Nonsense_Mutation	G	A	p.Q221*
SKCM	TCGA-W3-AA1V-06	ALOXE3	ENST00000318227.3,ENST00000448843.2,ENST00000380149.1	chr17	8007432:8007533:8011785:8011907:8012491:8012661,	8011786	8011907	8011795	8011795	Nonsense_Mutation	C	A	p.E715*
SKCM	TCGA-W3-AA1V-06	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000424310.2	chr5	158600990:158601166:158603639:158603875:158608967:158609059,	158603640	158603875	158603642	158603642	Nonsense_Mutation	G	A	p.Q207*
SKCM	TCGA-W3-AA1V-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
SKCM	TCGA-W3-AA1V-06	NISCH	ENST00000345716.4,ENST00000479054.1	chr3	52523500:52523694:52524090:52524247:52524720:52524849,	52524091	52524247	52524233	52524233	Nonsense_Mutation	C	A	p.S1200*
SKCM	TCGA-W3-AA1V-06	LIPC	ENST00000356113.6,ENST00000433326.2,ENST00000299022.5	chr15	58853062:58853180:58855703:58855922:58860914:58861072,	58855704	58855922	58855824	58855824	Nonsense_Mutation	G	A	p.W430*
SKCM	TCGA-W3-AA1V-06	SLC25A12	ENST00000472070.1,ENST00000422440.2,ENST00000263812.4,ENST00000392592.4	chr2	172641341:172641985:172644080:172644171:172644298:172644457,	172644081	172644171	172644160	172644160	Nonsense_Mutation	G	A	p.R586*
SKCM	TCGA-W3-AA1V-06	KCNH5	ENST00000322893.7,ENST00000394968.1	chr14	63246445:63246642:63269046:63269299:63316370:63316570,	63269047	63269299	63269215	63269215	Nonsense_Mutation	G	A	p.R552*
SKCM	TCGA-W3-AA1V-06	WDR11	ENST00000263461.6,ENST00000604509.1,ENST00000605543.1	chr10	122664830:122664928:122665387:122665533:122666287:122666367,	122665388	122665533	122665463	122665463	Nonsense_Mutation	C	T	p.Q1123*
SKCM	TCGA-W3-AA1V-06	CLK4	ENST00000521621.1,ENST00000519583.1,ENST00000520878.1,ENST00000316308.4	chr5	178032303:178032383:178035376:178035459:178039416:178039546,	178035377	178035459	178035379	178035379	Nonsense_Mutation	G	A	p.Q378*
SKCM	TCGA-W3-AA1V-06	ENTPD6	ENST00000435520.1	chr20	25176474:25176503:25187157:25187226:25187711:25187880,25176371:25176503:25187157:25187226:25187714:25187880,25177740:25177862:25187157:25187226:25187714:25188033,	25187158	25187226	25187224	25187224	Nonsense_Mutation	C	T	p.Q18*
SKCM	TCGA-FS-A1ZM-06	AGO1	ENST00000373204.4,ENST00000373206.1	chr1	36383922:36384024:36384655:36384855:36385099:36386559,	36384656	36384855	36384665	36384665	Nonsense_Mutation	C	T	p.R759*
SKCM	TCGA-WE-AAA4-06	CENPI	ENST00000423383.1,ENST00000372927.1,ENST00000218507.5	chrX	100387380:100387445:100395654:100395749:100400052:100400188,	100395655	100395749	100395667	100395667	Nonsense_Mutation	C	T	p.Q495*
SKCM	TCGA-FW-A5DY-06	HAMP	ENST00000598398.1,ENST00000222304.3	chr19	35773396:35773570:35775691:35775751:35775840:35776016,	35775692	35775751	35775748	35775748	Nonsense_Mutation	G	A	p.W49*
SKCM	TCGA-D9-A1JW-06	SNTG2	ENST00000407292.1,ENST00000308624.5	chr2	1204788:1204916:1241659:1241789:1243509:1243548,	1241660	1241789	1241662	1241662	Nonsense_Mutation	G	A	p.W241*
SKCM	TCGA-D9-A1JW-06	REG1A	ENST00000233735.1	chr2	79349164:79349251:79349966:79350078:79350273:79350545,	79349967	79350078	79349984	79349984	Nonsense_Mutation	G	A	p.W113*
SKCM	TCGA-D9-A1JW-06	EXD2	ENST00000409018.3,ENST00000449989.1,ENST00000312994.5,ENST00000409675.1,ENST00000409014.1,ENST00000409949.1,ENST00000409242.1	chr14	69697188:69697315:69701416:69701748:69702762:69702869,	69701417	69701748	69701576	69701576	Nonsense_Mutation	C	T	p.R168*
SKCM	TCGA-D9-A1JW-06	EXD2	ENST00000492815.1	chr14	69697188:69697315:69701490:69701748:69702762:69702869,	69701491	69701748	69701576	69701576	Nonsense_Mutation	C	T	p.R168*
SKCM	TCGA-D9-A1JW-06	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000526707.1,ENST00000524446.1	chr11	9167259:9167362:9168576:9168698:9171627:9171720,	9168577	9168698	9168652	9168652	Nonsense_Mutation	C	A	p.E928*
SKCM	TCGA-D9-A1JW-06	CCDC77	ENST00000239830.4,ENST00000540344.1,ENST00000543504.1,ENST00000422000.1,ENST00000540180.1,ENST00000412006.2	chr12	537934:538031:539829:539902:541031:541120,	539830	539902	539842	539842	Nonsense_Mutation	C	T	p.Q175*
SKCM	TCGA-D9-A1JW-06	TRPM3	ENST00000377105.1,ENST00000357533.2,ENST00000408909.2,ENST00000396280.5	chr9	73240106:73240247:73240397:73240433:73250126:73250177,	73240398	73240433	73240410	73240410	Nonsense_Mutation	C	T	p.W399*
SKCM	TCGA-D9-A1JW-06	SCFD2	ENST00000388940.4,ENST00000401642.3	chr4	54011499:54011749:54139992:54140168:54179802:54179930,	54139993	54140168	54140030	54140030	Nonsense_Mutation	C	T	p.W425*
SKCM	TCGA-D9-A1JW-06	CACNA1B	ENST00000277551.2,ENST00000371357.1,ENST00000371363.1,ENST00000371372.1,ENST00000277549.5,ENST00000371355.4	chr9	140972565:140972710:140990935:140991063:140997162:140997259,	140990936	140991063	140991040	140991040	Nonsense_Mutation	G	A	p.W927*
SKCM	TCGA-EE-A29T-06	ZNF655	ENST00000422164.1,ENST00000493277.1,ENST00000422647.1,ENST00000427931.1,ENST00000424881.1	chr7	99158155:99158318:99169310:99169415:99169867:99174076,	99169311	99169415	99169343	99169343	Nonsense_Mutation	C	T	p.Q57*
SKCM	TCGA-EE-A29T-06	MME	ENST00000462745.1,ENST00000492661.1,ENST00000493237.1,ENST00000360490.2,ENST00000460393.1,ENST00000495577.1	chr3	154884690:154884810:154886280:154886414:154886520:154886586,	154886281	154886414	154886358	154886358	Nonsense_Mutation	C	T	p.Q620*
SKCM	TCGA-EE-A2GL-06	PSD4	ENST00000409656.1,ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113949956:113950166:113950624:113950705:113950834:113950947,	113950625	113950705	113950695	113950695	Nonsense_Mutation	C	T	p.R637*
SKCM	TCGA-EE-A2GL-06	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609005	179609005	Nonsense_Mutation	C	T	p.R518*
SKCM	TCGA-EB-A4XL-01	RRM1	ENST00000526350.1,ENST00000300738.5	chr11	4123222:4123311:4127275:4127453:4128664:4128710,	4127276	4127453	4127300	4127300	Nonsense_Mutation	C	T	p.Q45*
SKCM	TCGA-EB-A4XL-01	NOSTRIN	ENST00000397206.2,ENST00000444448.2,ENST00000447264.2,ENST00000458381.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169687981:169688044:169690736:169690835:169699501:169699627,	169690737	169690835	169690785	169690785	Nonsense_Mutation	C	T	p.Q152*
SKCM	TCGA-EB-A4XL-01	FAM177B	ENST00000391880.2	chr1	222920356:222920423:222922302:222922904:222923262:222923538,	222922303	222922904	222922866	222922866	Nonsense_Mutation	C	T	p.Q101*
SKCM	TCGA-EB-A4XL-01	FAM177B	ENST00000360827.2,ENST00000445590.2	chr1	222920356:222920423:222922806:222922904:222923262:222923538,	222922807	222922904	222922866	222922866	Nonsense_Mutation	C	T	p.Q101*
SKCM	TCGA-EB-A4XL-01	DNAJC21	ENST00000303525.7,ENST00000382021.2	chr5	34929697:34930021:34933919:34934013:34935814:34935938,	34933920	34934013	34933970	34933970	Nonsense_Mutation	C	T	p.Q50*
SKCM	TCGA-EB-A4XL-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577374	48577374	Nonsense_Mutation	G	T	p.E853*
SKCM	TCGA-FS-A1ZN-01	ABCD3	ENST00000536817.1,ENST00000484213.1,ENST00000370214.4,ENST00000454898.2,ENST00000394233.2	chr1	94964338:94964404:94964500:94964590:94965050:94965170,	94964501	94964590	94964564	94964564	Nonsense_Mutation	C	T	p.Q532*
SKCM	TCGA-EB-A44N-01	VDR	ENST00000549336.1,ENST00000550314.1,ENST00000548664.1,ENST00000550325.1,ENST00000395324.2,ENST00000546653.1,ENST00000229022.3	chr12	48251443:48251471:48258829:48258960:48272598:48272898,48251443:48251471:48258829:48258960:48272750:48272898,	48258830	48258960	48258890	48258890	Nonsense_Mutation	G	A	p.R73*
SKCM	TCGA-EB-A44N-01	A1CF	ENST00000373997.3,ENST00000282641.2,ENST00000395495.1	chr10	52610424:52610567:52619601:52619745:52645340:52645387,52603747:52603882:52619601:52619745:52623792:52623840,	52619602	52619745	52619604	52619604	Nonsense_Mutation	G	A	p.Q33*
SKCM	TCGA-EB-A44N-01	HDAC3	ENST00000519474.1,ENST00000523088.1,ENST00000305264.3,ENST00000469550.2	chr5	141008171:141008206:141008739:141008873:141009250:141009306,	141008740	141008873	141008818	141008818	Nonsense_Mutation	G	A	p.Q178*
SKCM	TCGA-D3-A5GL-06	ARPP21	ENST00000417925.1,ENST00000458225.1,ENST00000187397.4,ENST00000481854.1	chr3	35758792:35758849:35763096:35763326:35770794:35770828,	35763097	35763326	35763134	35763134	Nonsense_Mutation	C	T	p.R345*
SKCM	TCGA-D3-A5GL-06	SLC7A9	ENST00000587772.1,ENST00000590465.1,ENST00000590341.1,ENST00000023064.4,ENST00000592232.1	chr19	33321525:33321590:33324054:33324229:33333073:33333223,	33324055	33324229	33324149	33324149	Nonsense_Mutation	C	T	p.W435*
SKCM	TCGA-D3-A5GL-06	JUP	ENST00000393930.1,ENST00000393931.3,ENST00000449889.1,ENST00000310706.5,ENST00000420370.1,ENST00000424457.1,ENST00000437187.1	chr17	39925220:39925459:39925669:39925929:39927898:39928106,	39925670	39925929	39925852	39925852	Nonsense_Mutation	C	A	p.E96*
SKCM	TCGA-ER-A19N-06	PDE6B	ENST00000429163.2,ENST00000496514.1,ENST00000255622.6	chr4	649728:649795:650033:650081:650662:650732,	650034	650081	650079	650079	Nonsense_Mutation	C	T	p.Q369*
SKCM	TCGA-ER-A19N-06	UBAP2	ENST00000421278.2	chr9	33956076:33956144:33960823:33960876:33971648:33971752,	33960824	33960876	33960857	33960857	Nonsense_Mutation	C	T	p.W11*
SKCM	TCGA-ER-A19N-06	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561324	145561324	Nonsense_Mutation	C	T	p.R338*
SKCM	TCGA-ER-A19N-06	PAIP2	ENST00000265192.4,ENST00000510080.1,ENST00000394795.2	chr5	138699447:138699611:138700252:138700432:138704421:138704487,	138700253	138700432	138700376	138700376	Nonsense_Mutation	C	T	p.Q88*
SKCM	TCGA-ER-A19N-06	DMXL2	ENST00000543779.2,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1,ENST00000558124.1,ENST00000559062.1	chr15	51748521:51748566:51749524:51749663:51750702:51750824,	51749525	51749663	51749620	51749620	Nonsense_Mutation	G	A	p.Q2726*
SKCM	TCGA-ER-A19N-06	ABCA10	ENST00000269081.4,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67189633:67189753:67189954:67190130:67190525:67190636,	67189955	67190130	67190038	67190038	Nonsense_Mutation	G	A	p.Q480*
SKCM	TCGA-ER-A19N-06	SPAG17	ENST00000336338.5	chr1	118565926:118566086:118567860:118568039:118570896:118571017,	118567861	118568039	118567963	118567963	Nonsense_Mutation	A	C	p.Y1269*
SKCM	TCGA-LH-A9QB-06	IGLL5	ENST00000532223.2	chr22	23230008:23230439:23235876:23235998:23237554:23237565,	23235877	23235998	23235890	23235890	Nonsense_Mutation	C	T	p.Q74*
SKCM	TCGA-FS-A1ZR-06	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43339358:43339487:43340589:43340689:43346939:43347097,	43340590	43340689	43340622	43340622	Nonsense_Mutation	G	A	p.R503*
SKCM	TCGA-EE-A185-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525945	176525945	Nonsense_Mutation	C	T	p.Q163*
SKCM	TCGA-EE-A185-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A185-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A185-06	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996532	45996532	Nonsense_Mutation	G	A	p.Q33*
SKCM	TCGA-EE-A185-06	APAF1	ENST00000552268.1,ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000333991.1,ENST00000551964.1,ENST00000357310.1	chr12	99043264:99043462:99052937:99053121:99056233:99056346,	99052938	99053121	99053033	99053033	Nonsense_Mutation	C	T	p.Q208*
SKCM	TCGA-EE-A185-06	CEP350	ENST00000367607.3	chr1	180003085:180003217:180006060:180006224:180010272:180010383,	180006061	180006224	180006154	180006154	Nonsense_Mutation	C	G	p.S1347*
SKCM	TCGA-FR-A8YE-06	CLASP1	ENST00000263710.4,ENST00000541377.1,ENST00000397587.3,ENST00000455322.2	chr2	122287822:122287901:122363276:122363756:122406947:122407052,	122363277	122363756	122363382	122363382	Nonsense_Mutation	A	T	p.Y30*
SKCM	TCGA-WE-A8K1-06	CLVS1	ENST00000325897.4	chr8	62200538:62200697:62212235:62212841:62289163:62289338,	62212236	62212841	62212537	62212537	Nonsense_Mutation	C	T	p.Q51*
SKCM	TCGA-WE-A8K1-06	CLVS1	ENST00000521189.1	chr8	62200538:62200697:62212235:62212837:62289163:62289338,	62212236	62212837	62212537	62212537	Nonsense_Mutation	C	T	p.Q51*
SKCM	TCGA-WE-A8K1-06	HOOK2	ENST00000397668.3,ENST00000264827.5	chr19	12874341:12874413:12874481:12874592:12875627:12875731,	12874482	12874592	12874514	12874514	Nonsense_Mutation	G	A	p.R634*
SKCM	TCGA-WE-A8K1-06	ATF7IP2	ENST00000535850.1,ENST00000568027.1,ENST00000543967.1,ENST00000356427.2,ENST00000396560.2	chr16	10567779:10567846:10574735:10574821:10575692:10575975,	10574736	10574821	10574766	10574766	Nonsense_Mutation	C	A	p.S527*
SKCM	TCGA-WE-A8K1-06	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379267	39379267	Nonsense_Mutation	C	T	p.Q180*
SKCM	TCGA-WE-A8K1-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101857	168101857	Nonsense_Mutation	C	T	p.Q1319*
SKCM	TCGA-D9-A4Z6-06	MYLK3	ENST00000394809.4	chr16	46766119:46766580:46771622:46772055:46773968:46774059,	46771623	46772055	46771693	46771693	Nonsense_Mutation	G	A	p.Q311*
SKCM	TCGA-D9-A4Z6-06	SH3RF3	ENST00000309415.6	chr2	109745996:109746569:109964129:109964405:109988041:109988137,	109964130	109964405	109964334	109964334	Nonsense_Mutation	C	T	p.Q260*
SKCM	TCGA-D9-A4Z6-06	ABHD4	ENST00000428304.2,ENST00000216327.6	chr14	23072505:23072667:23072829:23072984:23075327:23075439,	23072830	23072984	23072966	23072966	Nonsense_Mutation	C	T	p.R208*
SKCM	TCGA-3N-A9WD-06	CFLAR	ENST00000309955.3,ENST00000341582.6,ENST00000423241.2,ENST00000474842.1,ENST00000443227.1	chr2	202014476:202014558:202025154:202025665:202027718:202027803,202014476:202014558:202025154:202025665:202028557:202028696,	202025155	202025665	202025316	202025316	Nonsense_Mutation	C	T	p.Q319*
SKCM	TCGA-3N-A9WD-06	SETD7	ENST00000506866.2,ENST00000274031.3	chr4	140439038:140439196:140441430:140441548:140444507:140444589,	140441431	140441548	140441448	140441448	Nonsense_Mutation	G	A	p.R249*
SKCM	TCGA-3N-A9WD-06	KATNAL1	ENST00000380615.3,ENST00000380617.3	chr13	30815095:30815223:30829583:30829752:30854199:30854360,	30829584	30829752	30829640	30829640	Nonsense_Mutation	C	A	p.E146*
SKCM	TCGA-3N-A9WD-06	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735748	4735748	Nonsense_Mutation	G	A	p.Q774*
SKCM	TCGA-3N-A9WD-06	CEACAM21	ENST00000482870.2,ENST00000187608.9	chr19	42083551:42083911:42085705:42085981:42090702:42090796,	42085706	42085981	42085729	42085729	Nonsense_Mutation	C	T	p.Q22*
SKCM	TCGA-3N-A9WD-06	CEACAM21	ENST00000457737.1	chr19	42083551:42083911:42085622:42085981:42090702:42090796,	42085623	42085981	42085729	42085729	Nonsense_Mutation	C	T	p.Q22*
SKCM	TCGA-3N-A9WD-06	PTPRD	ENST00000381196.4,ENST00000486161.1,ENST00000397611.3,ENST00000537002.1,ENST00000355233.5,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000397617.3,ENST00000540109.1,ENST00000397606.3	chr9	8319830:8319966:8331581:8331736:8338921:8339047,	8331582	8331736	8331706	8331706	Nonsense_Mutation	G	A	p.Q1804*
SKCM	TCGA-3N-A9WD-06	EXOC5	ENST00000554011.1,ENST00000555148.1,ENST00000340918.7,ENST00000413566.2	chr14	57676670:57676779:57684699:57684786:57686039:57686160,	57684700	57684786	57684728	57684728	Nonsense_Mutation	C	A	p.E529*
SKCM	TCGA-3N-A9WD-06	PRLR	ENST00000509140.1,ENST00000397391.3,ENST00000513753.1,ENST00000382002.5,ENST00000231423.3,ENST00000509934.1,ENST00000542609.1,ENST00000514088.1,ENST00000310101.5,ENST00000348262.3	chr5	35070225:35070367:35072676:35072846:35089652:35089722,35070225:35070367:35072676:35072846:35084571:35084741,	35072677	35072846	35072709	35072709	Nonsense_Mutation	G	A	p.R171*
SKCM	TCGA-EE-A2GJ-06	ABCG1	ENST00000398449.3,ENST00000361802.2,ENST00000450121.1	chr21	43639227:43639414:43645780:43646024:43691179:43691297,	43645781	43646024	43646014	43646014	Nonsense_Mutation	G	A	p.W94*
SKCM	TCGA-EE-A2GJ-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121520	12121520	Nonsense_Mutation	G	T	p.E498*
SKCM	TCGA-EE-A2GJ-06	QKI	ENST00000537883.1,ENST00000361752.3,ENST00000361195.2,ENST00000545607.1	chr6	163984475:163984751:163987752:163987827:163991725:163991773,	163987753	163987827	163987773	163987773	Nonsense_Mutation	C	T	p.R319*
SKCM	TCGA-EE-A2GJ-06	QKI	ENST00000361758.4	chr6	163984475:163984751:163986977:163987827:163991725:163991773,	163986978	163987827	163987773	163987773	Nonsense_Mutation	C	T	p.R319*
SKCM	TCGA-EE-A2GJ-06	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366306	37366306	Nonsense_Mutation	C	T	p.Q977*
SKCM	TCGA-EE-A2GJ-06	KCNC4	ENST00000469655.1	chr1	110768596:110768800:110774842:110775219:110775532:110776666,	110774843	110775219	110774872	110774872	Nonsense_Mutation	C	T	p.Q617*
SKCM	TCGA-IH-A3EA-01	MYO15A	ENST00000205890.5	chr17	18047810:18047906:18049185:18049421:18051342:18051524,	18049186	18049421	18049228	18049228	Nonsense_Mutation	G	T	p.E2106*
SKCM	TCGA-IH-A3EA-01	KLK6	ENST00000594641.1,ENST00000376851.3,ENST00000310157.2	chr19	51462413:51462572:51470424:51470581:51471320:51471368,51466722:51466805:51470424:51470581:51471796:51471847,51466722:51466805:51470424:51470581:51471320:51471368,	51470425	51470581	51470516	51470516	Nonsense_Mutation	G	A	p.Q36*
SKCM	TCGA-IH-A3EA-01	KLC4	ENST00000347162.5,ENST00000458460.2	chr6	43027390:43027423:43029048:43029331:43030654:43030671,	43029049	43029331	43029218	43029218	Nonsense_Mutation	C	T	p.Q49*
SKCM	TCGA-IH-A3EA-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229527	7229527	Nonsense_Mutation	C	T	p.Q399*
SKCM	TCGA-IH-A3EA-01	UBE3C	ENST00000348165.5,ENST00000470408.1	chr7	157046937:157047004:157049607:157049738:157060278:157060370,	157049608	157049738	157049715	157049715	Nonsense_Mutation	C	T	p.R1020*
SKCM	TCGA-IH-A3EA-01	OSMR	ENST00000274276.3	chr5	38846100:38846489:38869133:38869219:38876302:38876475,	38869134	38869219	38869168	38869168	Nonsense_Mutation	C	T	p.Q8*
SKCM	TCGA-IH-A3EA-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115400064:115400118:115401167:115401332:115402363:115402431,	115401168	115401332	115401232	115401232	Nonsense_Mutation	G	A	p.W119*
SKCM	TCGA-IH-A3EA-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605956	179605956	Nonsense_Mutation	G	A	p.Q4002*
SKCM	TCGA-IH-A3EA-01	WT1	ENST00000452863.3,ENST00000448076.3,ENST00000379079.2	chr11	32410587:32410725:32413526:32413610:32414211:32414301,	32413527	32413610	32413596	32413596	Nonsense_Mutation	G	A	p.Q452*
SKCM	TCGA-IH-A3EA-01	WT1	ENST00000530998.1,ENST00000332351.3,ENST00000379077.3	chr11	32410587:32410725:32413517:32413610:32414211:32414301,	32413518	32413610	32413596	32413596	Nonsense_Mutation	G	A	p.Q452*
SKCM	TCGA-IH-A3EA-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32037903:32038191:32039766:32040075:32041423:32041729,	32039767	32040075	32039967	32039967	Nonsense_Mutation	C	T	p.W1597*
SKCM	TCGA-IH-A3EA-01	MUC16	ENST00000397910.4	chr19	9038379:9038415:9043425:9043461:9045563:9048189,	9043426	9043461	9043442	9043442	Nonsense_Mutation	C	T	p.W12029*
SKCM	TCGA-IH-A3EA-01	PYHIN1	ENST00000392252.3,ENST00000368138.3,ENST00000368140.1,ENST00000392254.2	chr1	158908213:158908332:158908869:158909037:158911766:158912189,	158908870	158909037	158908894	158908894	Nonsense_Mutation	G	T	p.E146*
SKCM	TCGA-IH-A3EA-01	PLA2G7	ENST00000538237.1,ENST00000274793.7,ENST00000537365.1	chr6	46680005:46680074:46682196:46682290:46702916:46703076,46680005:46680074:46682196:46682290:46684120:46684265,	46682197	46682290	46682265	46682265	Nonsense_Mutation	C	T	p.W134*
SKCM	TCGA-IH-A3EA-01	GABPB2	ENST00000368917.1,ENST00000368918.3,ENST00000462520.1,ENST00000368916.1	chr1	151060945:151060993:151062881:151063049:151065667:151065862,151060665:151060773:151062881:151063049:151065667:151065862,	151062882	151063049	151062948	151062948	Nonsense_Mutation	C	T	p.R59*
SKCM	TCGA-IH-A3EA-01	REG1A	ENST00000233735.1	chr2	79349164:79349251:79349966:79350078:79350273:79350545,	79349967	79350078	79349983	79349983	Nonsense_Mutation	G	A	p.W113*
SKCM	TCGA-IH-A3EA-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965716	123965716	Nonsense_Mutation	C	T	p.Q656*
SKCM	TCGA-IH-A3EA-01	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329471	56329471	Nonsense_Mutation	G	A	p.Q24*
SKCM	TCGA-D3-A2JD-06	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27497317:27497475:27499547:27499736:27499874:27499956,	27499548	27499736	27499675	27499675	Nonsense_Mutation	C	T	p.W1191*
SKCM	TCGA-D3-A2JD-06	TMEM26	ENST00000503886.1	chr10	63166400:63166873:63169206:63170504:63173216:63173293,	63169207	63170504	63170422	63170422	Nonsense_Mutation	C	T	p.W255*
SKCM	TCGA-D3-A2JD-06	GRM3	ENST00000536043.1,ENST00000361669.2,ENST00000546348.1	chr7	86415576:86416432:86479685:86479860:86493597:86493738,86468154:86469221:86479685:86479860:86493597:86493738,	86479686	86479860	86479836	86479836	Nonsense_Mutation	G	A	p.W492*
SKCM	TCGA-D3-A2JD-06	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21628129:21628254:21628825:21629021:21630535:21630640,	21628826	21629021	21628922	21628922	Nonsense_Mutation	G	A	p.W690*
SKCM	TCGA-D3-A2JD-06	CLEC4C	ENST00000542353.1,ENST00000360345.3	chr12	7890024:7890170:7894016:7894127:7898926:7899019,	7894017	7894127	7894077	7894077	Nonsense_Mutation	G	A	p.R59*
SKCM	TCGA-D3-A2JD-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-D3-A2JD-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-EE-A29L-06	SLC14A1	ENST00000402943.2,ENST00000415427.3,ENST00000321925.4,ENST00000502059.2,ENST00000588179.1,ENST00000535474.1,ENST00000436407.3,ENST00000586142.1	chr18	43316420:43316613:43319492:43319627:43328340:43328390,43319127:43319275:43319492:43319627:43328340:43328390,	43319493	43319627	43319587	43319587	Nonsense_Mutation	G	A	p.W253*
SKCM	TCGA-EE-A29L-06	PMFBP1	ENST00000237353.10,ENST00000537465.1	chr16	72153749:72153988:72156812:72156887:72157444:72157548,	72156813	72156887	72156856	72156856	Nonsense_Mutation	G	A	p.R914*
SKCM	TCGA-EE-A29L-06	GGTLC1	ENST00000286890.4,ENST00000335694.4,ENST00000278765.4	chr20	23965689:23965999:23966303:23966417:23966498:23966611,	23966304	23966417	23966376	23966376	Nonsense_Mutation	C	T	p.W153*
SKCM	TCGA-EE-A29L-06	ASB6	ENST00000277458.4	chr9	132401680:132401787:132402819:132403001:132404165:132404403,	132402820	132403001	132402973	132402973	Nonsense_Mutation	G	A	p.R48*
SKCM	TCGA-EE-A29L-06	TFPI	ENST00000392365.1,ENST00000426055.1,ENST00000481132.1,ENST00000233156.3	chr2	188331728:188331769:188332479:188332659:188348850:188348943,	188332480	188332659	188332640	188332640	Nonsense_Mutation	C	T	p.W216*
SKCM	TCGA-EE-A29L-06	POU2F3	ENST00000543440.2,ENST00000260264.4,ENST00000533620.1	chr11	120172994:120173077:120175738:120175921:120176352:120176494,	120175739	120175921	120175796	120175796	Nonsense_Mutation	C	T	p.Q170*
SKCM	TCGA-EE-A29L-06	C8A	ENST00000361249.3	chr1	57341734:57341882:57347117:57347307:57349153:57349285,	57347118	57347307	57347218	57347218	Nonsense_Mutation	C	T	p.R189*
SKCM	TCGA-EE-A29L-06	TRPC6	ENST00000348423.4,ENST00000344327.3,ENST00000360497.4	chr11	101344239:101344504:101347031:101347265:101353679:101353896,	101347032	101347265	101347198	101347198	Nonsense_Mutation	C	T	p.W526*
SKCM	TCGA-EE-A29L-06	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654712	29654712	Nonsense_Mutation	C	T	p.Q1822*
SKCM	TCGA-EE-A29L-06	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067001	62067001	Nonsense_Mutation	G	A	p.R380*
SKCM	TCGA-EE-A29L-06	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067001	62067001	Nonsense_Mutation	G	A	p.R380*
SKCM	TCGA-EE-A29L-06	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65906992:65909303:65914829:65914954:65916130:65916259,	65914830	65914954	65914840	65914840	Nonsense_Mutation	C	T	p.Q1898*
SKCM	TCGA-EE-A29L-06	PCSK5	ENST00000545128.1,ENST00000376767.3,ENST00000376752.4	chr9	78547294:78547399:78601047:78601161:78638653:78638797,	78601048	78601161	78601055	78601055	Nonsense_Mutation	G	A	p.W102*
SKCM	TCGA-EE-A29L-06	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740050	35740050	Nonsense_Mutation	G	A	p.W1026*
SKCM	TCGA-EE-A29L-06	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155408117:155408859:155429587:155429689:155447676:155452240,	155429588	155429689	155429669	155429669	Nonsense_Mutation	T	A	p.K1669*
SKCM	TCGA-EE-A29L-06	ADAMTS9	ENST00000459780.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64644177:64644467:64666876:64667039:64672243:64672286,	64666877	64667039	64666919	64666919	Nonsense_Mutation	G	A	p.Q213*
SKCM	TCGA-EB-A3XB-01	TPST2	ENST00000398110.2,ENST00000338754.4	chr22	26932253:26932452:26936754:26937684:26940569:26940641,	26936755	26937684	26937530	26937530	Nonsense_Mutation	G	A	p.Q23*
SKCM	TCGA-EB-A3XB-01	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819167	20819167	Nonsense_Mutation	G	A	p.R364*
SKCM	TCGA-EB-A3XB-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359662	19359662	Nonsense_Mutation	G	A	p.W1264*
SKCM	TCGA-EB-A3XB-01	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1616833:1617151:1629697:1630051,1615912:1616245:1616833:1617151:1629697:1630054,	1616834	1617151	1617037	1617037	Nonsense_Mutation	C	T	p.W149*
SKCM	TCGA-EB-A3XB-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3149142:3149199:3151691:3151891:3154944:3155086,	3151692	3151891	3151782	3151782	Nonsense_Mutation	G	A	p.R585*
SKCM	TCGA-EB-A3XB-01	IQCA1	ENST00000309507.5,ENST00000409907.3,ENST00000418802.1,ENST00000465621.1,ENST00000254653.5	chr2	237300971:237300993:237308055:237308131:237327791:237327914,	237308056	237308131	237308114	237308114	Nonsense_Mutation	C	T	p.W384*
SKCM	TCGA-EB-A3XB-01	MRPS35	ENST00000081029.3	chr12	27876979:27877119:27890471:27890541:27908113:27908470,27888379:27888489:27890471:27890541:27908113:27908470,	27890472	27890541	27890496	27890496	Nonsense_Mutation	C	G	p.Y219*
SKCM	TCGA-EB-A3XB-01	WDR91	ENST00000344400.5	chr7	134870533:134871067:134871723:134871921:134874095:134874204,	134871724	134871921	134871889	134871889	Nonsense_Mutation	G	A	p.Q601*
SKCM	TCGA-EB-A3XB-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099306	133099306	Nonsense_Mutation	C	T	p.Q251*
SKCM	TCGA-EE-A2A1-06	MET	ENST00000397752.3,ENST00000436117.2,ENST00000318493.6	chr7	116339138:116340338:116371721:116371913:116380003:116380138,	116371722	116371913	116371770	116371770	Nonsense_Mutation	C	T	p.R417*
SKCM	TCGA-EE-A2A1-06	CD74	ENST00000517791.1	chr5	149785821:149785884:149786443:149786887:149792187:149792295,	149786444	149786887	149786757	149786757	Nonsense_Mutation	G	A	p.Q86*
SKCM	TCGA-EE-A2A1-06	CD74	ENST00000522246.1	chr5	149786443:149786523:149786714:149786887:149792187:149792295,149785821:149785884:149786714:149786887:149792187:149792295,	149786715	149786887	149786757	149786757	Nonsense_Mutation	G	A	p.Q86*
SKCM	TCGA-EE-A2A1-06	NUDT7	ENST00000564085.1	chr16	77759327:77759481:77769724:77769883:77775478:77775721,77759327:77759481:77769724:77769883:77770546:77770640,	77769725	77769883	77769818	77769818	Nonsense_Mutation	G	T	p.E95*
SKCM	TCGA-EE-A2A1-06	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39165929:39166073:39171365:39171627:39175945:39176084,	39171366	39171627	39171399	39171399	Nonsense_Mutation	G	A	p.Q434*
SKCM	TCGA-EE-A2A1-06	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807209	22807209	Nonsense_Mutation	C	A	p.E225*
SKCM	TCGA-EE-A2A1-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904294	5904294	Nonsense_Mutation	C	T	p.Q502*
SKCM	TCGA-EE-A2A1-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830301	61830301	Nonsense_Mutation	C	T	p.W3446*
SKCM	TCGA-ER-A196-01	FXR2	ENST00000250113.7	chr17	7497235:7497322:7497555:7497665:7497996:7498075,	7497556	7497665	7497597	7497597	Nonsense_Mutation	G	A	p.R327*
SKCM	TCGA-EE-A3AA-06	SH3RF2	ENST00000511217.1	chr5	145439428:145439787:145441988:145442297:145458022:145461354,	145441989	145442297	145442097	145442097	Nonsense_Mutation	C	T	p.Q675*
SKCM	TCGA-EE-A3AA-06	NUDCD3	ENST00000472246.1,ENST00000355451.7	chr7	44431983:44432084:44444038:44444182:44467169:44467240,	44444039	44444182	44444178	44444178	Nonsense_Mutation	G	T	p.S216*
SKCM	TCGA-EE-A3AA-06	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73786098:73786269:73799388:73800551:73826527:73826648,	73799389	73800551	73799601	73799601	Nonsense_Mutation	C	T	p.Q3532*
SKCM	TCGA-EE-A3AA-06	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231825	230231825	Nonsense_Mutation	C	T	p.W622*
SKCM	TCGA-EE-A3AA-06	DDX3X	ENST00000457138.2	chrX	41193426:41193550:41196660:41196718:41200736:41200869,	41196661	41196718	41196686	41196686	Nonsense_Mutation	C	A	p.S24*
SKCM	TCGA-EE-A3AA-06	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968076	99968076	Nonsense_Mutation	C	T	p.R69*
SKCM	TCGA-EE-A3AA-06	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231101797:231101975:231102927:231103096:231103475:231103642,231101797:231101975:231102927:231103096:231106118:231106202,	231102928	231103096	231102934	231102934	Nonsense_Mutation	C	T	p.Q82*
SKCM	TCGA-EE-A3AA-06	GRIK4	ENST00000438375.2,ENST00000527524.2	chr11	120837903:120838032:120852814:120852933:120856612:120857970,	120852815	120852933	120852905	120852905	Nonsense_Mutation	G	A	p.W829*
SKCM	TCGA-EE-A3AA-06	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926913	1926913	Nonsense_Mutation	T	A	p.K210*
SKCM	TCGA-EE-A3AA-06	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926913	1926913	Nonsense_Mutation	T	A	p.K210*
SKCM	TCGA-EE-A3AA-06	ELF5	ENST00000312319.2,ENST00000257832.2,ENST00000429939.2	chr11	34501819:34501861:34502318:34502514:34503977:34504046,	34502319	34502514	34502435	34502435	Nonsense_Mutation	C	T	p.W195*
SKCM	TCGA-EE-A3AA-06	TECRL	ENST00000507440.1,ENST00000381210.3,ENST00000509536.1,ENST00000511356.1	chr4	65188406:65188510:65194229:65194274:65240889:65240941,	65194230	65194274	65194254	65194254	Nonsense_Mutation	G	A	p.R103*
SKCM	TCGA-EE-A3AA-06	UNC93A	ENST00000230256.3,ENST00000366829.2	chr6	167717406:167717621:167719402:167719538:167721266:167721398,	167719403	167719538	167719430	167719430	Nonsense_Mutation	C	T	p.Q290*
SKCM	TCGA-EE-A3AA-06	CBS	ENST00000398158.1,ENST00000398168.1,ENST00000488526.1,ENST00000441030.1,ENST00000465732.1,ENST00000352178.5,ENST00000470912.1,ENST00000398165.3,ENST00000359624.3	chr21	44488618:44488725:44492094:44492311:44493375:44493413,	44492095	44492311	44492176	44492176	Nonsense_Mutation	C	T	p.W43*
SKCM	TCGA-GN-A267-06	DKK2	ENST00000513208.1,ENST00000285311.3,ENST00000510463.1	chr4	107845101:107845361:107845701:107845857:107846955:107847106,	107845702	107845857	107845783	107845783	Nonsense_Mutation	G	A	p.R150*
SKCM	TCGA-GN-A267-06	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651824	99651824	Nonsense_Mutation	G	A	p.Q495*
SKCM	TCGA-GN-A267-06	TNR	ENST00000422274.2	chr1	175362915:175363031:175365679:175365943:175372275:175372752,175362915:175363031:175365679:175365943:175375351:175375500,	175365680	175365943	175365882	175365882	Nonsense_Mutation	C	T	p.W346*
SKCM	TCGA-GN-A267-06	TXNL1	ENST00000217515.6,ENST00000587613.1,ENST00000590954.1,ENST00000586262.1	chr18	54285271:54285357:54291518:54291692:54293591:54293688,	54291519	54291692	54291641	54291641	Nonsense_Mutation	G	A	p.R83*
SKCM	TCGA-GN-A267-06	PCK1	ENST00000319441.4,ENST00000535860.1	chr20	56138083:56138271:56138620:56138783:56139224:56139449,	56138621	56138783	56138731	56138731	Nonsense_Mutation	G	A	p.W303*
SKCM	TCGA-GN-A267-06	EFCAB14	ENST00000371933.3	chr1	47173577:47173723:47181966:47182115:47183574:47184736,	47181967	47182115	47181973	47181973	Nonsense_Mutation	G	A	p.R110*
SKCM	TCGA-GN-A267-06	C1orf127	ENST00000377008.4,ENST00000418570.2	chr1	11015046:11015243:11017641:11017810:11018770:11018809,	11017642	11017810	11017747	11017747	Nonsense_Mutation	C	A	p.G207*
SKCM	TCGA-GN-A267-06	PPP6C	ENST00000373546.3,ENST00000373547.4,ENST00000415905.1,ENST00000451402.1	chr9	127911775:127912200:127915811:127916021:127916184:127916264,	127915812	127916021	127915934	127915934	Nonsense_Mutation	G	A	p.Q220*
SKCM	TCGA-EE-A3JE-06	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005366	150005366	Nonsense_Mutation	G	A	p.R287*
SKCM	TCGA-EE-A3JE-06	SFTA2	ENST00000359086.3	chr6	30899129:30899351:30899483:30899572:30899812:30899952,	30899484	30899572	30899540	30899540	Nonsense_Mutation	C	A	p.E32*
SKCM	TCGA-EE-A3JE-06	NFATC3	ENST00000569766.1,ENST00000570212.1,ENST00000567152.1,ENST00000346183.3	chr16	68217142:68217269:68224670:68225678:68248231:68248335,68217142:68217269:68224670:68225678:68260252:68260374,	68224671	68225678	68225519	68225519	Nonsense_Mutation	C	T	p.Q983*
SKCM	TCGA-EE-A3JE-06	FRYL	ENST00000512810.1,ENST00000264319.7,ENST00000503339.1,ENST00000507873.2	chr4	48502046:48502237:48503639:48503750:48507563:48507632,	48503640	48503750	48503669	48503669	Nonsense_Mutation	G	A	p.Q2855*
SKCM	TCGA-WE-AAA0-06	TFCP2L1	ENST00000263707.5	chr2	121995377:121995426:121997133:121997225:121999934:122000045,	121997134	121997225	121997215	121997215	Nonsense_Mutation	C	T	p.W260*
SKCM	TCGA-WE-AAA0-06	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251823	81251823	Nonsense_Mutation	G	A	p.R543*
SKCM	TCGA-WE-AAA0-06	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56587754:56587865:56601664:56601846:56606676:56606853,	56601665	56601846	56601734	56601734	Nonsense_Mutation	C	T	p.Q806*
SKCM	TCGA-WE-AAA0-06	MYO3A	ENST00000265944.5	chr10	26462591:26463486:26465629:26465774:26482133:26482240,	26465630	26465774	26465653	26465653	Nonsense_Mutation	T	A	p.Y1439*
SKCM	TCGA-WE-AAA0-06	IGFBP4	ENST00000269593.4,ENST00000542955.1	chr17	38600279:38600336:38609236:38609394:38610179:38610314,	38609237	38609394	38609326	38609326	Nonsense_Mutation	C	T	p.R147*
SKCM	TCGA-WE-AAA0-06	NT5C	ENST00000579082.1,ENST00000578337.1,ENST00000582744.1	chr17	73126882:73126962:73127059:73127200:73127275:73127353,	73127060	73127200	73127134	73127134	Nonsense_Mutation	C	T	p.W28*
SKCM	TCGA-WE-AAA0-06	NT5C	ENST00000580758.1	chr17	73126882:73126962:73127059:73127176:73127275:73127353,	73127060	73127176	73127134	73127134	Nonsense_Mutation	C	T	p.W28*
SKCM	TCGA-WE-AAA0-06	CDC37L1	ENST00000381854.3,ENST00000381858.1	chr9	4684876:4685158:4688512:4688606:4697095:4697211,	4688513	4688606	4688584	4688584	Nonsense_Mutation	T	G	p.Y162*
SKCM	TCGA-WE-AAA0-06	ROS1	ENST00000368507.3,ENST00000368508.3	chr6	117609462:117609965:117622136:117622300:117629956:117630091,	117622137	117622300	117622224	117622224	Nonsense_Mutation	G	A	p.Q2216*
SKCM	TCGA-WE-AAA0-06	NT5C	ENST00000579082.1,ENST00000578337.1,ENST00000582744.1	chr17	73126882:73126962:73127059:73127200:73127275:73127353,	73127060	73127200	73127135	73127135	Nonsense_Mutation	C	T	p.W28*
SKCM	TCGA-WE-AAA0-06	NT5C	ENST00000580758.1	chr17	73126882:73126962:73127059:73127176:73127275:73127353,	73127060	73127176	73127135	73127135	Nonsense_Mutation	C	T	p.W28*
SKCM	TCGA-WE-AAA0-06	FCHO1	ENST00000596536.1,ENST00000597512.1,ENST00000389133.4,ENST00000595033.1,ENST00000594202.1,ENST00000252771.7,ENST00000600676.1,ENST00000539407.1,ENST00000596951.1	chr19	17894964:17895044:17895533:17895733:17897382:17897438,	17895534	17895733	17895672	17895672	Nonsense_Mutation	C	T	p.Q789*
SKCM	TCGA-GF-A769-01	THEG	ENST00000342640.4	chr19	373469:373531:373939:374011:374298:374421,	373940	374011	374007	374007	Nonsense_Mutation	C	A	p.G146*
SKCM	TCGA-D9-A6EC-06	TOP3B	ENST00000444502.1,ENST00000457179.1,ENST00000357179.5,ENST00000398793.2	chr22	22321974:22322088:22322990:22323147:22324581:22324778,	22322991	22323147	22323143	22323143	Nonsense_Mutation	G	A	p.Q196*
SKCM	TCGA-D9-A6EC-06	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220192336:220192421:220193329:220193563:220195688:220195860,	220193330	220193563	220193455	220193455	Nonsense_Mutation	C	T	p.W408*
SKCM	TCGA-D9-A6EC-06	CPNE3	ENST00000517490.1,ENST00000521271.1,ENST00000198765.4	chr8	87567078:87567212:87568329:87568566:87570515:87573639,	87568330	87568566	87568537	87568537	Nonsense_Mutation	C	T	p.Q488*
SKCM	TCGA-D9-A6EC-06	NCSTN	ENST00000368065.4,ENST00000368063.1,ENST00000535857.1,ENST00000392212.4,ENST00000294785.5	chr1	160326426:160326544:160326830:160327043:160327938:160328313,	160326831	160327043	160326852	160326852	Nonsense_Mutation	C	T	p.Q586*
SKCM	TCGA-D9-A6EC-06	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91483535:91483703:91485666:91485835:91486141:91486312,	91485667	91485835	91485796	91485796	Nonsense_Mutation	A	T	p.K258*
SKCM	TCGA-D9-A6EC-06	PSG9	ENST00000270077.3	chr19	43762353:43762608:43763008:43763287:43771935:43772301,43762353:43762608:43763008:43763287:43766011:43766290,	43763009	43763287	43763093	43763093	Nonsense_Mutation	T	A	p.R209*
SKCM	TCGA-D9-A6EC-06	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450446	55450446	Nonsense_Mutation	C	A	p.E609*
SKCM	TCGA-D9-A6EC-06	CYP4X1	ENST00000538609.1,ENST00000371901.3	chr1	47514236:47514301:47515093:47515176:47515671:47516422,	47515094	47515176	47515118	47515118	Nonsense_Mutation	C	T	p.Q433*
SKCM	TCGA-D9-A6EC-06	CHRNA9	ENST00000310169.2	chr4	40339302:40339381:40350898:40351431:40355995:40356111,	40350899	40351431	40351380	40351380	Nonsense_Mutation	C	T	p.Q283*
SKCM	TCGA-D9-A6EC-06	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220192336:220192421:220193329:220193563:220195688:220195860,	220193330	220193563	220193456	220193456	Nonsense_Mutation	C	T	p.W408*
SKCM	TCGA-D9-A6EC-06	GSDMC	ENST00000276708.4	chr8	130788347:130788531:130789613:130789837:130798256:130799134,	130789614	130789837	130789736	130789736	Nonsense_Mutation	A	C	p.L33*
SKCM	TCGA-D9-A6EC-06	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32756421:32756618:32768307:32768608:32770709:32770927,	32768308	32768608	32768572	32768572	Nonsense_Mutation	C	T	p.R4186*
SKCM	TCGA-D9-A6EC-06	PNP	ENST00000361505.5,ENST00000553591.1	chr14	20942630:20942734:20942931:20943107:20943220:20943305,	20942932	20943107	20943076	20943076	Nonsense_Mutation	C	T	p.Q144*
SKCM	TCGA-D9-A6EC-06	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000519092.1,ENST00000360863.6,ENST00000519408.1	chr8	101084372:101084458:101092361:101092583:101105674:101105737,	101092362	101092583	101092478	101092478	Nonsense_Mutation	G	A	p.Q75*
SKCM	TCGA-D9-A6EC-06	USP43	ENST00000570475.1	chr17	9604668:9605017:9613272:9613431:9615284:9615449,9604668:9605002:9613272:9613431:9615284:9615449,	9613273	9613431	9613338	9613338	Nonsense_Mutation	C	T	p.R382*
SKCM	TCGA-D9-A6EC-06	ZNF677	ENST00000594517.1,ENST00000594681.1,ENST00000598513.1,ENST00000601828.1,ENST00000333952.4,ENST00000599012.1,ENST00000601413.1,ENST00000598806.1	chr19	53746996:53747150:53754788:53754858:53756338:53756409,	53754789	53754858	53754791	53754791	Nonsense_Mutation	G	A	p.Q5*
SKCM	TCGA-D9-A6EC-06	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873694	35873694	Nonsense_Mutation	G	A	p.W217*
SKCM	TCGA-D9-A6EC-06	IL7R	ENST00000509668.1,ENST00000303115.3	chr5	35873635:35873750:35874550:35874644:35875613:35875623,	35874551	35874644	35874636	35874636	Nonsense_Mutation	G	A	p.W264*
SKCM	TCGA-D9-A6EC-06	HNF4A	ENST00000316673.4,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000316099.4	chr20	43048360:43048516:43052657:43052894:43056974:43057097,	43052658	43052894	43052705	43052705	Nonsense_Mutation	C	T	p.Q314*
SKCM	TCGA-D9-A6EC-06	EFHC1	ENST00000480623.1,ENST00000371068.5,ENST00000538167.1	chr6	52288743:52288965:52303101:52303389:52317485:52317635,	52303102	52303389	52303324	52303324	Nonsense_Mutation	C	T	p.R170*
SKCM	TCGA-D9-A6EC-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
SKCM	TCGA-D9-A6EC-06	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39165929:39166073:39171365:39171627:39175945:39176084,	39171366	39171627	39171504	39171504	Nonsense_Mutation	G	A	p.R399*
SKCM	TCGA-D9-A6EC-06	ADAM18	ENST00000379866.1,ENST00000265707.5	chr8	39502856:39502993:39505862:39506046:39521313:39521409,	39505863	39506046	39505984	39505984	Nonsense_Mutation	C	T	p.Q390*
SKCM	TCGA-D9-A6EC-06	STK39	ENST00000355999.4	chr2	168986050:168986116:168986219:168986268:168994597:168994731,	168986220	168986268	168986231	168986231	Nonsense_Mutation	G	A	p.Q338*
SKCM	TCGA-D9-A6EC-06	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39802080	39802080	Nonsense_Mutation	A	T	p.K3274*
SKCM	TCGA-D9-A6EC-06	SLC30A8	ENST00000456015.2,ENST00000427715.2,ENST00000521243.1,ENST00000519688.1	chr8	118165182:118165329:118169929:118170083:118173976:118174127,	118169930	118170083	118170031	118170031	Nonsense_Mutation	C	T	p.Q125*
SKCM	TCGA-D9-A6EC-06	ACSM2B	ENST00000565232.1,ENST00000566384.1,ENST00000569344.1,ENST00000567001.1	chr16	20570629:20570769:20575990:20576175:20587528:20587599,20570629:20570769:20575990:20576175:20586743:20586778,	20575991	20576175	20576146	20576146	Nonsense_Mutation	G	A	p.Q8*
SKCM	TCGA-D9-A6EC-06	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660959	3660959	Nonsense_Mutation	T	A	p.R234*
SKCM	TCGA-D9-A6EC-06	SLC45A4	ENST00000024061.3,ENST00000517878.1,ENST00000433583.2,ENST00000519067.1	chr8	142225857:142226069:142227188:142227288:142228109:142229128,	142227189	142227288	142227281	142227281	Nonsense_Mutation	G	T	p.S495*
SKCM	TCGA-D9-A6EC-06	DOCK7	ENST00000340370.5,ENST00000251157.5,ENST00000454575.1	chr1	62979141:62979277:62979386:62979569:62993821:62993976,	62979387	62979569	62979530	62979530	Nonsense_Mutation	G	A	p.R1326*
SKCM	TCGA-D9-A6EC-06	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36270114	36270114	Nonsense_Mutation	C	T	p.Q418*
SKCM	TCGA-D9-A6EC-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-D9-A6EC-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-D9-A6EC-06	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000423463.2,ENST00000360280.3,ENST00000357409.5	chr9	79910457:79910762:79917830:79917978:79922860:79923014,	79917831	79917978	79917931	79917931	Nonsense_Mutation	C	T	p.Q1305*
SKCM	TCGA-D9-A6EC-06	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527482	29527482	Nonsense_Mutation	G	T	p.G311*
SKCM	TCGA-D9-A6EC-06	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352339	113352339	Nonsense_Mutation	C	T	p.R546*
SKCM	TCGA-D9-A6EC-06	GSTZ1	ENST00000556627.1,ENST00000553838.1,ENST00000349555.3,ENST00000553268.1,ENST00000553431.1,ENST00000554279.1	chr14	77790911:77790965:77791212:77791264:77793180:77793248,77788889:77789075:77791212:77791264:77793180:77793248,77787436:77787526:77791212:77791264:77793180:77793248,	77791213	77791264	77791234	77791234	Nonsense_Mutation	C	T	p.R13*
SKCM	TCGA-D9-A6EC-06	SNX31	ENST00000428383.2,ENST00000311812.2,ENST00000519521.1	chr8	101596338:101596416:101601093:101601207:101608866:101608934,	101601094	101601207	101601144	101601144	Nonsense_Mutation	G	A	p.Q348*
SKCM	TCGA-D9-A6EC-06	C1orf94	ENST00000373374.3,ENST00000488417.1	chr1	34666372:34666633:34667684:34667860:34673757:34673835,	34667685	34667860	34667858	34667858	Nonsense_Mutation	C	T	p.Q482*
SKCM	TCGA-D9-A6EC-06	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77411876	77411876	Nonsense_Mutation	T	A	p.R800*
SKCM	TCGA-D9-A6EC-06	ARHGAP24	ENST00000506421.1,ENST00000503995.1	chr4	86396638:86396712:86491674:86491874:86643037:86643125,	86491675	86491874	86491737	86491737	Nonsense_Mutation	C	T	p.Q15*
SKCM	TCGA-D9-A6EC-06	DDHD1	ENST00000323669.5,ENST00000357758.3	chr14	53558628:53558650:53560033:53560162:53570400:53570574,	53560034	53560162	53560139	53560139	Nonsense_Mutation	G	A	p.R346*
SKCM	TCGA-D9-A6EC-06	C16orf46	ENST00000299578.5	chr16	81095314:81095743:81097350:81097598:81099797:81099886,	81097351	81097598	81097435	81097435	Nonsense_Mutation	A	C	p.Y42*
SKCM	TCGA-D9-A6EC-06	FBXW11	ENST00000519693.1	chr5	171326950:171327104:171337575:171337801:171433461:171433552,171326950:171327104:171337575:171337801:171423893:171423991,	171337576	171337801	171337701	171337701	Nonsense_Mutation	C	T	p.W70*
SKCM	TCGA-D9-A6EC-06	ASB15	ENST00000447789.1,ENST00000540573.1,ENST00000451558.1,ENST00000434204.1,ENST00000275699.3,ENST00000451215.1	chr7	123256417:123256549:123257632:123257791:123264622:123264868,	123257633	123257791	123257651	123257651	Nonsense_Mutation	G	A	p.W104*
SKCM	TCGA-D3-A5GN-06	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000591698.1	chr19	33369914:33370284:33372749:33372919:33378657:33378747,	33372750	33372919	33372865	33372865	Nonsense_Mutation	C	A	p.E674*
SKCM	TCGA-D3-A5GN-06	MTMR1	ENST00000370390.3,ENST00000445323.2,ENST00000544228.1,ENST00000541925.1	chrX	149919501:149919712:149924160:149924337:149931037:149931210,149919263:149919315:149924160:149924337:149931037:149931210,	149924161	149924337	149924335	149924335	Nonsense_Mutation	C	T	p.Q619*
SKCM	TCGA-D3-A5GN-06	PTPRD	ENST00000381196.4,ENST00000486161.1,ENST00000397611.3,ENST00000537002.1,ENST00000355233.5,ENST00000356435.5,ENST00000360074.4,ENST00000358503.5,ENST00000397617.3,ENST00000540109.1,ENST00000397606.3	chr9	8319830:8319966:8331581:8331736:8338921:8339047,	8331582	8331736	8331706	8331706	Nonsense_Mutation	G	A	p.Q1804*
SKCM	TCGA-D3-A5GN-06	MICAL3	ENST00000498573.1	chr22	18304795:18304936:18305712:18305826:18310409:18310547,18304795:18304936:18305712:18305826:18314619:18314693,	18305713	18305826	18305764	18305764	Nonsense_Mutation	C	A	p.E1086*
SKCM	TCGA-D3-A2J8-06	CFI	ENST00000510800.1,ENST00000394634.2,ENST00000394635.3,ENST00000512148.1	chr4	110685692:110685846:110687709:110687980:110723070:110723134,	110687710	110687980	110687842	110687842	Nonsense_Mutation	G	A	p.Q66*
SKCM	TCGA-D3-A2J8-06	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000435423.1,ENST00000359028.2,ENST00000356239.3	chr7	91714898:91715000:91715541:91715730:91718698:91718843,	91715542	91715730	91715708	91715708	Nonsense_Mutation	T	A	p.L3068*
SKCM	TCGA-D3-A2J8-06	EFCAB6	ENST00000468552.1	chr22	43995948:43996143:44004361:44004480:44022326:44022559,	44004362	44004480	44004441	44004441	Nonsense_Mutation	G	A	p.R868*
SKCM	TCGA-D3-A2J8-06	C8A	ENST00000361249.3	chr1	57341734:57341882:57347117:57347307:57349153:57349285,	57347118	57347307	57347218	57347218	Nonsense_Mutation	C	T	p.R189*
SKCM	TCGA-D3-A2J8-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125859	12125859	Nonsense_Mutation	G	A	p.W1944*
SKCM	TCGA-D3-A2J8-06	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4,ENST00000417380.2	chr6	88318813:88318947:88321806:88321966:88326031:88326145,	88321807	88321966	88321922	88321922	Nonsense_Mutation	C	T	p.Q277*
SKCM	TCGA-D3-A2J8-06	MYO1C	ENST00000571615.1,ENST00000545534.2,ENST00000575158.1,ENST00000359786.5,ENST00000361007.2,ENST00000438665.2,ENST00000575864.1	chr17	1374516:1374630:1375200:1375318:1375416:1375522,	1375201	1375318	1375289	1375289	Nonsense_Mutation	G	A	p.Q645*
SKCM	TCGA-FS-A1ZC-06	PTPN9	ENST00000306726.2	chr15	75762150:75762340:75763020:75763171:75766029:75766108,	75763021	75763171	75763107	75763107	Nonsense_Mutation	G	A	p.R425*
SKCM	TCGA-FS-A1ZC-06	FBXW5	ENST00000483559.1	chr9	139835988:139836136:139836497:139837147:139837220:139837357,	139836498	139837147	139836504	139836504	Nonsense_Mutation	G	A	p.Q364*
SKCM	TCGA-FS-A1ZC-06	FBXW5	ENST00000433269.1,ENST00000325285.3	chr9	139835988:139836136:139836497:139836918:139836998:139837120,	139836498	139836918	139836504	139836504	Nonsense_Mutation	G	A	p.Q364*
SKCM	TCGA-FS-A1ZC-06	VPS4B	ENST00000238497.5	chr18	61058095:61058309:61060641:61060782:61064266:61064357,	61060642	61060782	61060688	61060688	Nonsense_Mutation	C	T	p.W396*
SKCM	TCGA-FS-A1ZC-06	NOVA1	ENST00000267422.7,ENST00000483536.2,ENST00000549146.1,ENST00000449198.2,ENST00000539517.2,ENST00000549571.1	chr14	26918057:26918169:26941525:26941597:26949182:26949349,	26941526	26941597	26941528	26941528	Nonsense_Mutation	G	A	p.Q173*
SKCM	TCGA-FS-A1ZC-06	TCOF1	ENST00000377797.3,ENST00000515035.1,ENST00000513346.1,ENST00000451292.1,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149751568:149751799:149753736:149753949:149754179:149754374,	149753737	149753949	149753761	149753761	Nonsense_Mutation	C	T	p.Q299*
SKCM	TCGA-FS-A1ZC-06	TESK2	ENST00000538496.1,ENST00000486676.1,ENST00000372084.1,ENST00000372086.3,ENST00000341771.6	chr1	45812650:45812734:45813280:45813365:45813589:45813672,	45813281	45813365	45813304	45813304	Nonsense_Mutation	G	A	p.R229*
SKCM	TCGA-XV-AAZY-01	FAM81B	ENST00000507832.1,ENST00000283357.5	chr5	94772503:94772610:94782265:94782401:94783972:94784168,	94782266	94782401	94782293	94782293	Nonsense_Mutation	C	G	p.Y307*
SKCM	TCGA-EE-A2GI-06	LILRB5	ENST00000450632.1	chr19	54759148:54759445:54759905:54760178:54760351:54760520,	54759906	54760178	54759988	54759988	Nonsense_Mutation	C	T	p.W182*
SKCM	TCGA-EE-A2GI-06	LILRB5	ENST00000316219.5,ENST00000449561.2,ENST00000466581.1	chr19	54759148:54759445:54759905:54760205:54760351:54760520,	54759906	54760205	54759988	54759988	Nonsense_Mutation	C	T	p.W182*
SKCM	TCGA-EE-A2GI-06	CORIN	ENST00000273857.4,ENST00000502252.1,ENST00000508498.1,ENST00000505909.1	chr4	47602230:47602364:47605413:47605685:47625587:47625762,	47605414	47605685	47605664	47605664	Nonsense_Mutation	C	T	p.W854*
SKCM	TCGA-EE-A2GI-06	FGD6	ENST00000551521.1,ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95486603:95486621:95488367:95488470:95498782:95498862,	95488368	95488470	95488460	95488460	Nonsense_Mutation	C	A	p.E1170*
SKCM	TCGA-EE-A2GI-06	TRIM33	ENST00000358465.2,ENST00000450349.2,ENST00000448034.1,ENST00000369543.2	chr1	114970369:114970516:114973419:114973534:114976238:114976355,	114973420	114973534	114973461	114973461	Nonsense_Mutation	C	A	p.E372*
SKCM	TCGA-EE-A2GI-06	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920788	107920788	Nonsense_Mutation	C	T	p.R136*
SKCM	TCGA-EE-A2GI-06	TMPRSS11B	ENST00000332644.5	chr4	69093727:69093790:69094459:69094602:69094974:69095070,	69094460	69094602	69094496	69094496	Nonsense_Mutation	A	T	p.C351*
SKCM	TCGA-EE-A2GI-06	RANBP3	ENST00000340578.6,ENST00000592771.1,ENST00000592197.1,ENST00000034275.8,ENST00000591092.1,ENST00000541471.1,ENST00000439268.2,ENST00000586344.1	chr19	5918506:5918649:5921211:5921332:5923204:5923314,	5921212	5921332	5921218	5921218	Nonsense_Mutation	G	A	p.R442*
SKCM	TCGA-EE-A2GI-06	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331488	85331488	Nonsense_Mutation	G	A	p.Q106*
SKCM	TCGA-EE-A2GI-06	SERPINI1	ENST00000472747.2,ENST00000295777.5,ENST00000446050.2	chr3	167508159:167508390:167510377:167510572:167512407:167512467,	167510378	167510572	167510533	167510533	Nonsense_Mutation	C	T	p.Q213*
SKCM	TCGA-EE-A2GI-06	NF1	ENST00000471572.2,ENST00000444181.2	chr17	29664834:29664898:29665019:29665157:29665721:29665823,	29665020	29665157	29665053	29665053	Nonsense_Mutation	C	T	p.Q2239*
SKCM	TCGA-EE-A2GI-06	NF1	ENST00000358273.4,ENST00000584328.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29664836:29664898:29665042:29665157:29665721:29665823,	29665043	29665157	29665053	29665053	Nonsense_Mutation	C	T	p.Q2239*
SKCM	TCGA-EE-A2GI-06	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43340589:43340689:43346939:43347097:43348541:43348640,	43346940	43347097	43347094	43347094	Nonsense_Mutation	G	A	p.R429*
SKCM	TCGA-BF-A5ER-01	ARHGAP11A	ENST00000565905.1,ENST00000543522.1,ENST00000564918.1,ENST00000361627.3,ENST00000562481.1	chr15	32926133:32926242:32927977:32928116:32928457:32928497,	32927978	32928116	32928050	32928050	Nonsense_Mutation	C	T	p.R473*
SKCM	TCGA-FS-A4FC-06	SIRT3	ENST00000524564.1	chr11	230451:230552:232982:233215:236047:236326,	232983	233215	233184	233184	Nonsense_Mutation	G	A	p.Q169*
SKCM	TCGA-FS-A4FC-06	GLT1D1	ENST00000413816.2,ENST00000542193.1,ENST00000537468.1,ENST00000442111.2,ENST00000281703.6	chr12	129360458:129360607:129373183:129373289:129383780:129383832,	129373184	129373289	129373189	129373189	Nonsense_Mutation	C	T	p.R75*
SKCM	TCGA-FS-A4FC-06	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405830	91405830	Nonsense_Mutation	G	A	p.Q361*
SKCM	TCGA-FS-A4FC-06	CSMD3	ENST00000343508.3,ENST00000297405.5,ENST00000339701.3,ENST00000352409.3	chr8	113314021:113314195:113316949:113317144:113318235:113318421,	113316950	113317144	113316976	113316976	Nonsense_Mutation	C	T	p.W2747*
SKCM	TCGA-FS-A4FC-06	STK10	ENST00000176763.5	chr5	171517235:171517366:171520415:171520964:171523429:171523564,	171520416	171520964	171520703	171520703	Nonsense_Mutation	G	A	p.Q423*
SKCM	TCGA-FS-A4FC-06	TSPAN12	ENST00000450414.1,ENST00000222747.3,ENST00000415871.1	chr7	120428427:120428951:120446602:120446746:120450516:120450624,	120446603	120446746	120446608	120446608	Nonsense_Mutation	G	A	p.Q203*
SKCM	TCGA-FS-A4FC-06	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230571	46230571	Nonsense_Mutation	C	T	p.R274*
SKCM	TCGA-FS-A4FC-06	POLN	ENST00000511885.2,ENST00000382865.1,ENST00000515357.1	chr4	2181034:2181192:2194930:2195043:2200250:2200444,	2194931	2195043	2195030	2195030	Nonsense_Mutation	G	A	p.Q308*
SKCM	TCGA-FS-A4FC-06	PAM	ENST00000438793.3,ENST00000348126.2	chr5	102355493:102355547:102360834:102361038:102363885:102363926,102355493:102355547:102360834:102361038:102364590:102364814,102355493:102355547:102360834:102361038:102363888:102363942,	102360835	102361038	102361015	102361015	Nonsense_Mutation	G	A	p.W889*
SKCM	TCGA-FS-A4FC-06	PAM	ENST00000504456.1	chr5	102355493:102355547:102360837:102361038:102363888:102363942,102355493:102355547:102360837:102361038:102363885:102363926,	102360838	102361038	102361015	102361015	Nonsense_Mutation	G	A	p.W889*
SKCM	TCGA-FS-A4FC-06	ARHGAP31	ENST00000264245.4,ENST00000482743.1	chr3	119084162:119084265:119087218:119087363:119099750:119099833,	119087219	119087363	119087271	119087271	Nonsense_Mutation	C	T	p.Q86*
SKCM	TCGA-FS-A4FC-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830301	61830301	Nonsense_Mutation	C	T	p.W3446*
SKCM	TCGA-EE-A2M5-06	FMNL2	ENST00000288670.9	chr2	153415253:153415337:153417396:153417549:153431649:153431758,	153417397	153417549	153417457	153417457	Nonsense_Mutation	G	A	p.W168*
SKCM	TCGA-EE-A2M5-06	C19orf57	ENST00000346736.2,ENST00000454313.1,ENST00000586783.1	chr19	13996773:13996868:14000000:14001275:14003598:14003703,	14000001	14001275	14001203	14001203	Nonsense_Mutation	G	A	p.Q156*
SKCM	TCGA-EE-A2M5-06	GRM3	ENST00000536043.1,ENST00000361669.2,ENST00000546348.1	chr7	86415576:86416432:86479685:86479860:86493597:86493738,86468154:86469221:86479685:86479860:86493597:86493738,	86479686	86479860	86479837	86479837	Nonsense_Mutation	G	A	p.W490*
SKCM	TCGA-EE-A2M5-06	ZPBP	ENST00000046087.2	chr7	50097584:50097737:50121369:50121495:50129224:50129305,	50121370	50121495	50121403	50121403	Nonsense_Mutation	G	A	p.Q101*
SKCM	TCGA-EE-A2M5-06	SLC47A1	ENST00000497548.1,ENST00000571335.1,ENST00000270570.4,ENST00000395585.1,ENST00000575023.1,ENST00000584348.1,ENST00000457293.1,ENST00000542886.1	chr17	19449747:19449816:19451297:19451446:19452947:19452990,	19451298	19451446	19451383	19451383	Nonsense_Mutation	G	A	p.W131*
SKCM	TCGA-EE-A2M5-06	RAD21	ENST00000518055.1,ENST00000523986.1,ENST00000297338.2	chr8	117859572:117859930:117861184:117861268:117862856:117863000,	117861185	117861268	117861238	117861238	Nonsense_Mutation	G	A	p.Q551*
SKCM	TCGA-EE-A2M5-06	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165465	50165465	Nonsense_Mutation	C	T	p.W241*
SKCM	TCGA-EE-A2M5-06	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165465	50165465	Nonsense_Mutation	C	T	p.W241*
SKCM	TCGA-EE-A2M5-06	NXPE1	ENST00000536312.1	chr11	114399517:114399554:114400896:114401630:114421824:114421923,	114400897	114401630	114401625	114401625	Nonsense_Mutation	C	T	p.W35*
SKCM	TCGA-EE-A2M5-06	SEC24D	ENST00000419654.2,ENST00000511481.1,ENST00000379735.5,ENST00000514561.1,ENST00000280551.6,ENST00000505134.1,ENST00000429811.2	chr4	119662095:119662192:119665142:119665313:119666098:119666215,	119665143	119665313	119665155	119665155	Nonsense_Mutation	G	T	p.Y662*
SKCM	TCGA-EE-A2M5-06	ZNF300	ENST00000274599.5,ENST00000427179.1,ENST00000394226.2	chr5	150277989:150278116:150282702:150282744:150283425:150283539,	150282703	150282744	150282705	150282705	Nonsense_Mutation	G	A	p.Q5*
SKCM	TCGA-EE-A2M5-06	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186669973	186669973	Nonsense_Mutation	A	T	p.K5403*
SKCM	TCGA-EE-A2M5-06	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28624231:28624359:28626681:28626811:28631483:28631599,	28626682	28626811	28626773	28626773	Nonsense_Mutation	T	A	p.K175*
SKCM	TCGA-EE-A2M5-06	GRIK3	ENST00000373091.3,ENST00000373093.4	chr1	37337788:37337970:37346234:37346492:37356520:37356697,	37346235	37346492	37346270	37346270	Nonsense_Mutation	C	T	p.W172*
SKCM	TCGA-EE-A2M5-06	PRDM10	ENST00000533431.1,ENST00000304538.6,ENST00000528746.1,ENST00000360871.3	chr11	129793142:129793298:129794776:129795124:129800910:129801153,	129794777	129795124	129795112	129795112	Nonsense_Mutation	G	A	p.Q519*
SKCM	TCGA-EE-A2M5-06	TSR3	ENST00000566296.1	chr16	1399426:1399609:1400058:1400235:1400807:1401001,	1400059	1400235	1400074	1400074	Nonsense_Mutation	G	A	p.Q230*
SKCM	TCGA-EE-A2M5-06	PLOD1	ENST00000376369.3,ENST00000196061.4	chr1	12018647:12018704:12020702:12020824:12023588:12023693,	12020703	12020824	12020721	12020721	Nonsense_Mutation	C	T	p.Q332*
SKCM	TCGA-EE-A2M5-06	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000514350.1,ENST00000505766.1	chr5	75858220:75858377:75866404:75866482:75871517:75871594,	75866405	75866482	75866423	75866423	Nonsense_Mutation	C	T	p.R108*
SKCM	TCGA-EE-A2M5-06	AQP4	ENST00000383168.4,ENST00000440832.3,ENST00000583022.1,ENST00000581374.1	chr18	24436252:24436453:24440735:24440816:24441094:24441259,	24440736	24440816	24440749	24440749	Nonsense_Mutation	C	T	p.W227*
SKCM	TCGA-DA-A3F8-06	TIAM2	ENST00000461783.3,ENST00000318981.5,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1	chr6	155448623:155448734:155450351:155451551:155458310:155458746,	155450352	155451551	155451411	155451411	Nonsense_Mutation	C	T	p.Q352*
SKCM	TCGA-DA-A3F8-06	PUS7L	ENST00000551923.1,ENST00000431332.3,ENST00000416848.2,ENST00000344862.5	chr12	44123565:44124505:44125507:44125561:44130183:44130464,	44125508	44125561	44125510	44125510	Nonsense_Mutation	G	A	p.Q593*
SKCM	TCGA-DA-A3F8-06	SLC6A3	ENST00000453492.2,ENST00000270349.9,ENST00000513308.1	chr5	1416212:1416316:1420683:1420818:1421990:1422129,	1420684	1420818	1420810	1420810	Nonsense_Mutation	C	T	p.W267*
SKCM	TCGA-DA-A3F8-06	MYO7B	ENST00000428314.1,ENST00000389524.4,ENST00000409816.2	chr2	128324217:128324402:128327363:128327485:128331494:128331637,	128327364	128327485	128327434	128327434	Nonsense_Mutation	C	T	p.Q181*
SKCM	TCGA-DA-A3F8-06	CAB39L	ENST00000457041.1,ENST00000409308.1,ENST00000410043.1,ENST00000347776.5,ENST00000355854.4,ENST00000413278.1	chr13	49933859:49933968:49951102:49951267:49956935:49957077,	49951103	49951267	49951177	49951177	Nonsense_Mutation	G	A	p.Q68*
SKCM	TCGA-DA-A3F8-06	MYO5B	ENST00000285039.7	chr18	47431041:47431198:47432788:47433000:47438431:47438543,	47432789	47433000	47432958	47432958	Nonsense_Mutation	G	A	p.R749*
SKCM	TCGA-DA-A3F8-06	RSPH10B	ENST00000441023.2,ENST00000337579.3,ENST00000405415.1,ENST00000539903.1,ENST00000404406.1	chr7	5965957:5966179:5967826:5968025:5972412:5972506,	5967827	5968025	5967999	5967999	Nonsense_Mutation	G	A	p.R754*
SKCM	TCGA-DA-A3F8-06	AKIP1	ENST00000534506.1	chr11	8932745:8932770:8932990:8933218:8933999:8934080,8932745:8932770:8932990:8933218:8936372:8936477,	8932991	8933218	8933051	8933051	Nonsense_Mutation	C	T	p.Q19*
SKCM	TCGA-DA-A3F8-06	PCSK5	ENST00000424854.2,ENST00000545128.1,ENST00000376767.3,ENST00000376752.4	chr9	78722166:78722267:78749024:78749128:78771960:78772078,	78749025	78749128	78749103	78749103	Nonsense_Mutation	G	A	p.W429*
SKCM	TCGA-DA-A3F8-06	QKI	ENST00000453779.2,ENST00000392127.2,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163876310:163876453:163899811:163899834,	163876311	163876453	163876429	163876429	Nonsense_Mutation	T	A	p.Y87*
SKCM	TCGA-DA-A3F8-06	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3515899:3515983:3520868:3520982:3526408:3526537,	3520869	3520982	3520922	3520922	Nonsense_Mutation	G	A	p.W183*
SKCM	TCGA-DA-A3F8-06	VPS11	ENST00000531528.2,ENST00000527798.1,ENST00000300793.6,ENST00000529838.2	chr11	118949891:118950010:118951801:118952024:118952168:118952674,	118951802	118952024	118951815	118951815	Nonsense_Mutation	C	T	p.Q817*
SKCM	TCGA-WE-A8ZO-06	DGCR2	ENST00000473832.1,ENST00000537045.1,ENST00000263196.7	chr22	19044507:19044675:19050714:19050791:19052360:19052571,	19050715	19050791	19050786	19050786	Nonsense_Mutation	C	T	p.W182*
SKCM	TCGA-WE-A8ZO-06	USP4	ENST00000431357.1	chr3	49335984:49336068:49337899:49338124:49339816:49339896,49335984:49336068:49337899:49338124:49339870:49339975,	49337900	49338124	49337953	49337953	Nonsense_Mutation	G	A	p.R440*
SKCM	TCGA-WE-A8ZO-06	DAB1	ENST00000414851.2	chr1	57491653:57491716:57499195:57499246:57528556:57528616,	57499196	57499246	57499222	57499222	Nonsense_Mutation	C	A	p.E215*
SKCM	TCGA-D3-A3CB-06	SLC25A19	ENST00000580273.1	chr17	73279645:73279674:73282384:73282540:73285434:73285467,	73282385	73282540	73282437	73282437	Nonsense_Mutation	C	T	p.W79*
SKCM	TCGA-D3-A3CB-06	KIAA1257	ENST00000511438.1,ENST00000515659.1,ENST00000510149.1,ENST00000265068.5	chr3	128695855:128695909:128696887:128697028:128706458:128706672,	128696888	128697028	128697005	128697005	Nonsense_Mutation	G	A	p.Q231*
SKCM	TCGA-D3-A3CB-06	SLC6A12	ENST00000535498.1,ENST00000544782.1,ENST00000545058.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	306542:306667:307065:307169:307962:308097,	307066	307169	307164	307164	Nonsense_Mutation	C	T	p.W284*
SKCM	TCGA-ER-A19T-06	NDUFAF2	ENST00000502658.1	chr5	60241161:60241209:60368951:60369041:60448530:60448843,	60368952	60369041	60369037	60369037	Nonsense_Mutation	G	A	p.W71*
SKCM	TCGA-ER-A19T-01	NDUFAF2	ENST00000502658.1	chr5	60241161:60241209:60368951:60369041:60448530:60448843,	60368952	60369041	60369037	60369037	Nonsense_Mutation	G	A	p.W71*
SKCM	TCGA-EE-A3JD-06	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112451077:112451242:112452169:112452303:112453954:112454092,	112452170	112452303	112452237	112452237	Nonsense_Mutation	G	A	p.Q1301*
SKCM	TCGA-EE-A3JD-06	PKD1L2	ENST00000526632.1,ENST00000525539.1,ENST00000299598.7,ENST00000531391.1,ENST00000533478.1,ENST00000337114.4	chr16	81211411:81211588:81213249:81213391:81214755:81214876,	81213250	81213391	81213265	81213265	Nonsense_Mutation	G	A	p.R749*
SKCM	TCGA-EE-A3JD-06	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57092970:57093160:57094656:57094785:57105775:57105940,	57094657	57094785	57094720	57094720	Nonsense_Mutation	G	A	p.R653*
SKCM	TCGA-EE-A3JD-06	DTNBP1	ENST00000515875.1,ENST00000506844.1,ENST00000338950.5,ENST00000344537.5,ENST00000511762.2,ENST00000510395.1,ENST00000355917.3,ENST00000513680.1	chr6	15615497:15615630:15627573:15627706:15637974:15638035,	15627574	15627706	15627669	15627669	Nonsense_Mutation	C	T	p.W87*
SKCM	TCGA-EE-A3JD-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749422	196749422	Nonsense_Mutation	G	A	p.R1884*
SKCM	TCGA-EE-A3JD-06	CYP4F12	ENST00000549622.1,ENST00000548237.1	chr19	15783899:15783945:15784338:15784537:15789070:15789139,15783899:15783945:15784338:15784537:15791053:15791062,	15784339	15784537	15784425	15784425	Nonsense_Mutation	G	A	p.W29*
SKCM	TCGA-EE-A3JD-06	BCAS3	ENST00000407086.3,ENST00000586041.1,ENST00000585744.1,ENST00000588462.1,ENST00000408905.3,ENST00000390652.5,ENST00000586484.1,ENST00000589222.1,ENST00000586705.1,ENST00000590128.1,ENST00000588874.1	chr17	58967121:58967132:58979980:58980064:58987892:58988063,	58979981	58980064	58980029	58980029	Nonsense_Mutation	C	T	p.Q263*
SKCM	TCGA-EE-A3JD-06	PDE1C	ENST00000321453.7,ENST00000396193.1,ENST00000396184.3,ENST00000396182.2,ENST00000396191.1	chr7	31876793:31876914:31877483:31877585:31887581:31887710,	31877484	31877585	31877578	31877578	Nonsense_Mutation	G	A	p.R330*
SKCM	TCGA-EE-A3JD-06	CYP2F1	ENST00000331105.2,ENST00000531409.1,ENST00000532164.2	chr19	41622359:41622522:41626251:41626401:41627362:41627523,	41626252	41626401	41626275	41626275	Nonsense_Mutation	C	T	p.R120*
SKCM	TCGA-EE-A3JD-06	ZNF77	ENST00000314531.4	chr19	2933215:2934813:2936521:2936702:2939278:2939405,	2936522	2936702	2936550	2936550	Nonsense_Mutation	G	A	p.Q95*
SKCM	TCGA-EE-A3JD-06	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87080938:87081110:87082259:87082451:87083850:87083908,	87082260	87082451	87082366	87082366	Nonsense_Mutation	G	A	p.R144*
SKCM	TCGA-EE-A3JD-06	FRAS1	ENST00000264895.6,ENST00000325942.6	chr4	79296892:79297033:79300879:79301150:79305212:79305297,	79300880	79301150	79301097	79301097	Nonsense_Mutation	G	A	p.W1170*
SKCM	TCGA-EE-A3JD-06	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320978	46320978	Nonsense_Mutation	T	A	p.K521*
SKCM	TCGA-EE-A3JD-06	SLC17A1	ENST00000377886.2,ENST00000427328.1,ENST00000244527.4	chr6	25783353:25783446:25799010:25799147:25801117:25801208,	25799011	25799147	25799051	25799051	Nonsense_Mutation	G	A	p.Q456*
SKCM	TCGA-EE-A3JD-06	OAS2	ENST00000392583.2	chr12	113416406:113416590:113424842:113425113:113433100:113433279,	113424843	113425113	113424927	113424927	Nonsense_Mutation	C	T	p.Q88*
SKCM	TCGA-EE-A3JD-06	CCDC38	ENST00000549876.1,ENST00000344280.3	chr12	96266139:96266238:96271988:96272124:96273421:96273449,	96271989	96272124	96272009	96272009	Nonsense_Mutation	C	A	p.E420*
SKCM	TCGA-EE-A3JD-06	PTCD3	ENST00000254630.7	chr2	86354283:86354428:86355063:86355114:86357770:86357860,	86355064	86355114	86355108	86355108	Nonsense_Mutation	C	T	p.Q381*
SKCM	TCGA-EE-A3JD-06	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119495677:119495802:119567910:119568099:119582895:119583062,	119567911	119568099	119567939	119567939	Nonsense_Mutation	G	A	p.Q790*
SKCM	TCGA-EE-A3JD-06	C8A	ENST00000361249.3	chr1	57341734:57341882:57347117:57347307:57349153:57349285,	57347118	57347307	57347208	57347208	Nonsense_Mutation	G	A	p.W185*
SKCM	TCGA-EE-A3JD-06	MRPS33	ENST00000324787.5	chr7	140705968:140706335:140710218:140710460:140714151:140714229,140705968:140706335:140710218:140710460:140714710:140714749,	140710219	140710460	140710238	140710238	Nonsense_Mutation	G	A	p.R66*
SKCM	TCGA-EE-A3JD-06	MRPS33	ENST00000467334.1	chr7	140705968:140706335:140710218:140710417:140714710:140714749,	140710219	140710417	140710238	140710238	Nonsense_Mutation	G	A	p.R66*
SKCM	TCGA-EE-A3JD-06	TTC12	ENST00000393020.1,ENST00000464224.1,ENST00000529221.1,ENST00000483239.2,ENST00000534793.1,ENST00000314756.3,ENST00000494714.1	chr11	113205748:113205759:113209495:113209556:113210007:113210161,	113209496	113209556	113209547	113209547	Nonsense_Mutation	C	T	p.Q210*
SKCM	TCGA-EE-A3JD-06	SULT1C4	ENST00000409309.3	chr2	108998217:108998343:108999871:108999966:109002647:109002828,	108999872	108999966	108999909	108999909	Nonsense_Mutation	G	A	p.W186*
SKCM	TCGA-EE-A3JD-06	ROCK2	ENST00000261535.3,ENST00000315872.6	chr2	11367379:11367524:11375827:11376088:11389786:11389924,	11375828	11376088	11376073	11376073	Nonsense_Mutation	G	A	p.Q160*
SKCM	TCGA-EE-A3JD-06	OSMR	ENST00000274276.3	chr5	38885450:38885586:38886140:38886292:38903983:38904126,	38886141	38886292	38886289	38886289	Nonsense_Mutation	C	T	p.R330*
SKCM	TCGA-EE-A3JD-06	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324309	158324309	Nonsense_Mutation	G	A	p.W67*
SKCM	TCGA-EE-A3JD-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
SKCM	TCGA-EE-A3JD-06	C5orf34	ENST00000514462.1	chr5	43505849:43506496:43508678:43508768:43514907:43515126,	43508679	43508768	43508741	43508741	Nonsense_Mutation	G	A	p.R75*
SKCM	TCGA-EE-A3JD-06	C2orf50	ENST00000405022.3	chr2	11273254:11273717:11280635:11280675:11284045:11284268,	11280636	11280675	11280648	11280648	Nonsense_Mutation	G	A	p.W90*
SKCM	TCGA-EE-A3JD-06	KBTBD12	ENST00000405109.1,ENST00000405256.1	chr3	127634317:127634429:127646606:127646877:127648975:127649126,127642923:127642974:127646606:127646877:127648975:127649126,	127646607	127646877	127646784	127646784	Nonsense_Mutation	G	A	p.W416*
SKCM	TCGA-FS-A1ZQ-06	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144997235	144997235	Nonsense_Mutation	G	A	p.Q2425*
SKCM	TCGA-FS-A1ZQ-06	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78592384:78592456:78593114:78593311:78594252:78594342,	78593115	78593311	78593243	78593243	Nonsense_Mutation	G	A	p.W2216*
SKCM	TCGA-FS-A1ZQ-06	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104877831	104877831	Nonsense_Mutation	G	A	p.Q151*
SKCM	TCGA-FS-A1ZQ-06	WDR34	ENST00000372715.2,ENST00000480613.1	chr9	131397496:131397538:131397936:131398046:131398559:131398717,	131397937	131398046	131398016	131398016	Nonsense_Mutation	C	T	p.W245*
SKCM	TCGA-FS-A1ZQ-06	MARK3	ENST00000303622.9,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000429436.2	chr14	103928741:103928798:103931893:103932130:103932308:103932428,	103931894	103932130	103932026	103932026	Nonsense_Mutation	C	T	p.Q225*
SKCM	TCGA-ER-A2NC-06	BCR	ENST00000359540.3,ENST00000305877.8	chr22	23603541:23603727:23610594:23610702:23613718:23613779,	23610595	23610702	23610670	23610670	Nonsense_Mutation	C	T	p.Q610*
SKCM	TCGA-ER-A2NC-06	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17700193	17700193	Nonsense_Mutation	C	T	p.Q1311*
SKCM	TCGA-ER-A2NC-06	TTLL9	ENST00000375938.4,ENST00000535842.1,ENST00000310998.4,ENST00000375934.4	chr20	30497539:30497725:30507666:30507735:30510765:30510856,	30507667	30507735	30507728	30507728	Nonsense_Mutation	G	A	p.W189*
SKCM	TCGA-ER-A2NC-06	STK24	ENST00000539966.1	chr13	99134518:99134575:99171496:99171727:99228998:99229117,99127503:99127612:99171496:99171727:99228998:99229117,	99171497	99171727	99171631	99171631	Nonsense_Mutation	G	A	p.Q47*
SKCM	TCGA-ER-A2NC-06	ADAM23	ENST00000374415.3,ENST00000264377.3,ENST00000374416.1	chr2	207425851:207425936:207426926:207427017:207429743:207429792,	207426927	207427017	207426990	207426990	Nonsense_Mutation	C	T	p.Q440*
SKCM	TCGA-ER-A2NC-06	UBA2	ENST00000246548.4,ENST00000592841.1	chr19	34919413:34919475:34921480:34921564:34922765:34922836,	34921481	34921564	34921554	34921554	Nonsense_Mutation	C	G	p.S71*
SKCM	TCGA-W3-A828-06	SHC1	ENST00000368445.5,ENST00000368453.4,ENST00000448116.2,ENST00000414115.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938637:154938707:154938794:154938993:154940146:154940273,	154938795	154938993	154938806	154938806	Nonsense_Mutation	C	A	p.G391*
SKCM	TCGA-W3-A828-06	NCR1	ENST00000291890.4,ENST00000357397.5,ENST00000350790.5	chr19	55421377:55421425:55423535:55423586:55424057:55424239,	55423536	55423586	55423546	55423546	Nonsense_Mutation	G	A	p.W230*
SKCM	TCGA-W3-A828-06	NCR1	ENST00000598576.1,ENST00000447255.1,ENST00000594765.1	chr19	55421377:55421425:55423538:55423586:55424057:55424239,	55423539	55423586	55423546	55423546	Nonsense_Mutation	G	A	p.W230*
SKCM	TCGA-W3-A828-06	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38248364:38248504:38266135:38266472:38320073:38320592,	38266136	38266472	38266159	38266159	Nonsense_Mutation	C	T	p.W404*
SKCM	TCGA-W3-A828-06	BPHL	ENST00000434640.1,ENST00000488487.2,ENST00000380368.2,ENST00000424847.2,ENST00000380379.5,ENST00000380375.3,ENST00000490918.1,ENST00000430655.2,ENST00000433912.1	chr6	3127475:3127642:3129278:3129432:3137595:3137656,	3129279	3129432	3129294	3129294	Nonsense_Mutation	A	T	p.K115*
SKCM	TCGA-W3-A828-06	SLC25A34	ENST00000489568.1,ENST00000294454.5	chr1	16064587:16064740:16065088:16065223:16065718:16065830,	16065089	16065223	16065109	16065109	Nonsense_Mutation	G	A	p.W206*
SKCM	TCGA-W3-A828-06	SDS	ENST00000257549.4	chr12	113831696:113831821:113834969:113835197:113836319:113836411,	113834970	113835197	113835068	113835068	Nonsense_Mutation	C	T	p.W185*
SKCM	TCGA-W3-A828-06	CHRNA2	ENST00000520933.2,ENST00000407991.1,ENST00000240132.2,ENST00000523529.1	chr8	27319119:27319271:27320495:27321510:27324745:27324855,	27320496	27321510	27321442	27321442	Nonsense_Mutation	C	T	p.W173*
SKCM	TCGA-W3-A828-06	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71576396	71576396	Nonsense_Mutation	G	A	p.W104*
SKCM	TCGA-W3-A828-06	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71576396	71576396	Nonsense_Mutation	G	A	p.W104*
SKCM	TCGA-W3-A828-06	CEACAM1	ENST00000599389.1,ENST00000377806.3,ENST00000403461.1,ENST00000403444.3,ENST00000344391.5,ENST00000403136.1,ENST00000352591.5,ENST00000161559.6,ENST00000308072.4,ENST00000358394.3	chr19	43025418:43025673:43026075:43026354:43031192:43031552,	43026076	43026354	43026232	43026232	Nonsense_Mutation	G	A	p.Q183*
SKCM	TCGA-W3-A828-06	B4GALT7	ENST00000505433.1,ENST00000505145.1,ENST00000029410.5	chr5	177034302:177034528:177035539:177035623:177035910:177036015,	177035540	177035623	177035571	177035571	Nonsense_Mutation	G	A	p.W224*
SKCM	TCGA-W3-A828-06	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56615415:56615461:56620749:56621031:56646286:56646387,	56620750	56621031	56620855	56620855	Nonsense_Mutation	G	T	p.E992*
SKCM	TCGA-W3-A828-06	ARHGEF6	ENST00000370620.1,ENST00000250617.6,ENST00000370622.1,ENST00000535227.1	chrX	135767835:135767982:135770090:135770150:135772768:135772907,	135770091	135770150	135770102	135770102	Nonsense_Mutation	T	A	p.K412*
SKCM	TCGA-W3-A828-06	PKD2	ENST00000508588.1,ENST00000502363.1,ENST00000512858.1,ENST00000511337.1,ENST00000237596.2	chr4	88986913:88987031:88989049:88989213:88995963:88996111,	88989050	88989213	88989209	88989209	Nonsense_Mutation	C	T	p.Q840*
SKCM	TCGA-W3-A828-06	OBSL1	ENST00000265318.4,ENST00000404537.1,ENST00000373876.1	chr2	220418295:220418408:220419195:220419462:220420741:220421014,	220419196	220419462	220419394	220419394	Nonsense_Mutation	G	A	p.Q1560*
SKCM	TCGA-W3-A828-06	SIGLEC9	ENST00000440804.3	chr19	51628164:51628652:51628853:51629132:51629337:51629385,	51628854	51629132	51628972	51628972	Nonsense_Mutation	G	A	p.W180*
SKCM	TCGA-W3-A828-06	SEPT11	ENST00000502584.1,ENST00000505788.1	chr4	77871014:77871083:77917577:77917692:77926753:77926949,	77917578	77917692	77917590	77917590	Nonsense_Mutation	C	T	p.R14*
SKCM	TCGA-W3-A828-06	FCHO2	ENST00000507345.2,ENST00000341845.6,ENST00000287761.6,ENST00000430046.2	chr5	72302271:72302376:72311452:72311551:72313038:72313109,	72311453	72311551	72311459	72311459	Nonsense_Mutation	C	T	p.Q203*
SKCM	TCGA-EE-A20C-06	ADH1A	ENST00000209668.2	chr4	100200582:100200721:100201300:100201436:100203502:100203763,	100201301	100201436	100201357	100201357	Nonsense_Mutation	G	T	p.S303*
SKCM	TCGA-EE-A20C-06	BRCA1	ENST00000478531.1,ENST00000470026.1,ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000493919.1,ENST00000491747.2,ENST00000492859.1,ENST00000468300.1,ENST00000477152.1,ENST00000494123.1,ENST00000354071.3,ENST00000461221.1,ENST00000467274.1,ENST00000357654.3,ENST00000471181.2	chr17	41246760:41246877:41247862:41247939:41249260:41249306,	41247863	41247939	41247929	41247929	Nonsense_Mutation	G	A	p.Q202*
SKCM	TCGA-EE-A20C-06	CREBL2	ENST00000228865.2	chr12	12764825:12765121:12788710:12788908:12790503:12790508,	12788711	12788908	12788822	12788822	Nonsense_Mutation	C	T	p.R43*
SKCM	TCGA-EE-A20C-06	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37667781:37667883:37671983:37672061:37673692:37673809,	37671984	37672061	37672045	37672045	Nonsense_Mutation	C	T	p.Q944*
SKCM	TCGA-EE-A20C-06	CLYBL	ENST00000444838.2,ENST00000376355.3,ENST00000376354.1	chr13	100511114:100511303:100517071:100517165:100518493:100518661,	100517072	100517165	100517153	100517153	Nonsense_Mutation	C	T	p.R174*
SKCM	TCGA-EE-A20C-06	ZRANB3	ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	136023103:136023256:136026531:136026711:136029337:136029457,	136026532	136026711	136026661	136026661	Nonsense_Mutation	C	T	p.W419*
SKCM	TCGA-EE-A20C-06	ADAMTSL2	ENST00000393061.3,ENST00000354484.4,ENST00000393060.1	chr9	136401833:136401924:136402526:136402669:136403470:136403546,	136402527	136402669	136402603	136402603	Nonsense_Mutation	G	A	p.W165*
SKCM	TCGA-EE-A20C-06	DNAH5	ENST00000265104.4	chr5	13727615:13727765:13729547:13729669:13735239:13735430,	13729548	13729669	13729620	13729620	Nonsense_Mutation	C	T	p.W3937*
SKCM	TCGA-EE-A20C-06	ITPR2	ENST00000381340.3	chr12	26864105:26864201:26868231:26868378:26868684:26868768,	26868232	26868378	26868252	26868252	Nonsense_Mutation	T	A	p.K279*
SKCM	TCGA-EE-A20C-06	SLC30A8	ENST00000456015.2,ENST00000518521.1	chr8	118147566:118147637:118159192:118159392:118165182:118165214,	118159193	118159392	118159337	118159337	Nonsense_Mutation	G	A	p.W23*
SKCM	TCGA-EE-A20C-06	NOTUM	ENST00000409678.3,ENST00000477214.1	chr17	79913390:79913420:79914525:79914626:79914758:79914950,	79914526	79914626	79914583	79914583	Nonsense_Mutation	G	A	p.Q311*
SKCM	TCGA-EE-A20C-06	COX4I2	ENST00000490030.1	chr20	30225735:30225765:30226820:30226902:30227735:30227893,	30226821	30226902	30226841	30226841	Nonsense_Mutation	G	A	p.W7*
SKCM	TCGA-EE-A20C-06	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30740286:30740552:30740690:30740893:30744600:30744770,	30740691	30740893	30740785	30740785	Nonsense_Mutation	C	T	p.Q2007*
SKCM	TCGA-EE-A20C-06	DDX39A	ENST00000588692.1,ENST00000242776.4	chr19	14520114:14520259:14520347:14520457:14520553:14520685,	14520348	14520457	14520412	14520412	Nonsense_Mutation	G	A	p.Q304*
SKCM	TCGA-EE-A20C-06	CORO1A	ENST00000563778.1,ENST00000561815.1,ENST00000219150.5,ENST00000569970.1,ENST00000568763.1,ENST00000565497.1,ENST00000570045.1	chr16	30196529:30196728:30198136:30198266:30198359:30198404,30197918:30198041:30198136:30198266:30198359:30198404,	30198137	30198266	30198142	30198142	Nonsense_Mutation	G	A	p.W109*
SKCM	TCGA-EE-A20C-06	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141244782	141244782	Nonsense_Mutation	G	A	p.Q372*
SKCM	TCGA-EE-A20C-06	TRIML2	ENST00000326754.3,ENST00000511771.1,ENST00000512729.1,ENST00000536972.1	chr4	189020188:189020329:189022209:189022404:189025990:189026086,	189022210	189022404	189022263	189022263	Nonsense_Mutation	G	A	p.Q93*
SKCM	TCGA-EE-A20C-06	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197059979:197060171:197061036:197061186:197062181:197062391,	197061037	197061186	197061162	197061162	Nonsense_Mutation	G	A	p.R3107*
SKCM	TCGA-EE-A20C-06	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460079	107460079	Nonsense_Mutation	T	A	p.K119*
SKCM	TCGA-EE-A20C-06	CLEC4M	ENST00000394122.2,ENST00000248228.4,ENST00000334806.5,ENST00000327325.5,ENST00000595496.1,ENST00000359059.5,ENST00000602143.1,ENST00000596707.1	chr19	7831541:7831693:7832401:7832514:7833723:7833874,	7832402	7832514	7832468	7832468	Nonsense_Mutation	C	T	p.Q335*
SKCM	TCGA-EE-A20C-06	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288341	74288341	Nonsense_Mutation	G	A	p.Q657*
SKCM	TCGA-EE-A20C-06	APOE	ENST00000446996.1,ENST00000434152.1,ENST00000252486.4,ENST00000425718.1	chr19	45409873:45409924:45411016:45411209:45411789:45411859,	45411017	45411209	45411097	45411097	Nonsense_Mutation	C	T	p.Q42*
SKCM	TCGA-EE-A20C-06	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47822244:47822397:47831102:47831981:47832750:47832906,	47831103	47831981	47831556	47831556	Nonsense_Mutation	C	T	p.Q1857*
SKCM	TCGA-EE-A20C-06	MTG2	ENST00000471352.1,ENST00000436421.2,ENST00000370823.3,ENST00000467101.1	chr20	60758106:60758113:60768471:60768680:60770857:60771005,	60768472	60768680	60768522	60768522	Nonsense_Mutation	C	T	p.Q16*
SKCM	TCGA-EE-A2MH-06	MTDH	ENST00000521933.1	chr8	98731276:98731417:98735106:98735263:98736827:98736845,98725889:98725997:98735106:98735263:98736827:98736845,	98735107	98735263	98735188	98735188	Nonsense_Mutation	C	T	p.Q535*
SKCM	TCGA-ER-A2NB-01	NLRP2	ENST00000397169.3,ENST00000543010.1,ENST00000433772.2,ENST00000448584.2,ENST00000427260.2,ENST00000540597.1,ENST00000585500.1,ENST00000588619.1	chr19	55485867:55485912:55489119:55489191:55492984:55493007,	55489120	55489191	55489137	55489137	Nonsense_Mutation	C	T	p.R115*
SKCM	TCGA-EE-A2GN-06	EIF3K	ENST00000248342.4,ENST00000593149.1,ENST00000590134.1	chr19	39123069:39123136:39125632:39125758:39127528:39127564,39123240:39123318:39125632:39125758:39127528:39127564,	39125633	39125758	39125707	39125707	Nonsense_Mutation	C	T	p.Q192*
SKCM	TCGA-EE-A2GN-06	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717741	89717741	Nonsense_Mutation	G	T	p.E256*
SKCM	TCGA-EE-A2GN-06	SLC13A5	ENST00000573648.1,ENST00000293800.6,ENST00000381074.4,ENST00000433363.2,ENST00000572094.1,ENST00000574824.1	chr17	6599135:6599260:6604322:6604445:6606288:6606457,	6604323	6604445	6604350	6604350	Nonsense_Mutation	C	T	p.W271*
SKCM	TCGA-EE-A2GN-06	ACSM2A	ENST00000575690.1,ENST00000219054.6,ENST00000571894.1,ENST00000576361.1	chr16	20462932:20463003:20471428:20471613:20476838:20476978,20463753:20463788:20471428:20471613:20476838:20476978,	20471429	20471613	20471449	20471449	Nonsense_Mutation	C	T	p.R5*
SKCM	TCGA-EE-A2GN-06	DDX3X	ENST00000542215.1	chrX	41201989:41202089:41202468:41202604:41202989:41203075,41201989:41202089:41202468:41202604:41203282:41203381,	41202469	41202604	41202598	41202598	Nonsense_Mutation	C	T	p.Q225*
SKCM	TCGA-EE-A2GN-06	DDX19A	ENST00000443119.2,ENST00000569771.1,ENST00000566574.1,ENST00000569319.1,ENST00000575878.1,ENST00000417604.2,ENST00000302243.7	chr16	70400526:70400764:70404125:70404288:70405274:70405466,	70404126	70404288	70404177	70404177	Nonsense_Mutation	C	T	p.Q358*
SKCM	TCGA-EE-A2GN-06	ZNF695	ENST00000487338.2	chr1	247130996:247131094:247151426:247151557:247162649:247162742,	247151427	247151557	247151498	247151498	Nonsense_Mutation	G	A	p.Q107*
SKCM	TCGA-EE-A2GN-06	ZNF695	ENST00000479214.1,ENST00000366504.2	chr1	247130996:247131094:247151422:247151557:247162649:247162742,	247151423	247151557	247151498	247151498	Nonsense_Mutation	G	A	p.Q107*
SKCM	TCGA-D3-A8GI-06	TMEM241	ENST00000497608.1,ENST00000450466.2,ENST00000580025.1,ENST00000582336.1,ENST00000577531.1,ENST00000383233.3,ENST00000542162.1,ENST00000473688.1,ENST00000578520.1,ENST00000581444.1	chr18	20979529:20979611:21010594:21010641:21017744:21017817,21001330:21001408:21010594:21010641:21017744:21017817,	21010595	21010641	21010599	21010599	Nonsense_Mutation	G	A	p.Q39*
SKCM	TCGA-D3-A8GI-06	TMX2	ENST00000524972.1	chr11	57505079:57505140:57506135:57506511:57506602:57506732,	57506136	57506511	57506486	57506486	Nonsense_Mutation	G	T	p.G197*
SKCM	TCGA-D3-A8GI-06	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128029338:128031161:128040832:128040968:128134027:128135076,	128040833	128040968	128040929	128040929	Nonsense_Mutation	G	A	p.Q521*
SKCM	TCGA-D3-A8GI-06	ANKRD10	ENST00000267339.2	chr13	111536076:111536140:111545374:111545610:111558379:111558442,	111545375	111545610	111545525	111545525	Nonsense_Mutation	G	A	p.Q181*
SKCM	TCGA-D3-A8GI-06	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157517298:157517449:157519944:157520041:157521838:157522622,	157519945	157520041	157519957	157519957	Nonsense_Mutation	T	A	p.Y1342*
SKCM	TCGA-D3-A8GI-06	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10421749:10421883:10423340:10423402:10425157:10425303,	10423341	10423402	10423345	10423345	Nonsense_Mutation	C	T	p.R1437*
SKCM	TCGA-D3-A8GI-06	RPH3A	ENST00000551052.1	chr12	113274295:113274307:113285500:113285647:113303218:113303348,113266123:113266194:113285500:113285647:113303218:113303237,	113285501	113285647	113285505	113285505	Nonsense_Mutation	C	T	p.Q30*
SKCM	TCGA-D3-A8GI-06	GABPA	ENST00000400075.3,ENST00000354828.3	chr21	27130320:27130515:27134622:27134676:27136520:27136661,	27134623	27134676	27134673	27134673	Nonsense_Mutation	C	T	p.Q267*
SKCM	TCGA-D3-A8GI-06	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	75022205:75022396:75052556:75052821:75070337:75070408,	75052557	75052821	75052774	75052774	Nonsense_Mutation	G	A	p.Q205*
SKCM	TCGA-D3-A8GI-06	LGR6	ENST00000367278.3,ENST00000439764.2,ENST00000255432.7	chr1	202274811:202274877:202275995:202276067:202276457:202276529,	202275996	202276067	202276020	202276020	Nonsense_Mutation	G	A	p.W387*
SKCM	TCGA-D3-A8GI-06	LGR6	ENST00000487787.1	chr1	202274811:202274877:202275892:202276067:202276457:202276529,	202275893	202276067	202276020	202276020	Nonsense_Mutation	G	A	p.W387*
SKCM	TCGA-D3-A8GI-06	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128404859:128404969:128410834:128411137:128505576:128505870,	128410835	128411137	128411070	128411070	Nonsense_Mutation	C	T	p.W410*
SKCM	TCGA-D3-A8GI-06	GUCY1A2	ENST00000282249.2	chr11	106579237:106579392:106617276:106617369:106647164:106647308,	106617277	106617369	106617327	106617327	Nonsense_Mutation	G	A	p.Q627*
SKCM	TCGA-D3-A8GI-06	LAMB4	ENST00000205386.4,ENST00000388781.3,ENST00000388780.3,ENST00000422975.1	chr7	107669487:107669641:107671250:107671424:107674652:107674791,	107671251	107671424	107671415	107671415	Nonsense_Mutation	G	A	p.Q1610*
SKCM	TCGA-D3-A8GI-06	LDHC	ENST00000280704.4,ENST00000539369.1,ENST00000541669.1,ENST00000536880.1,ENST00000396215.3	chr11	18456286:18456460:18460074:18460192:18472509:18472674,18456286:18456460:18460074:18460192:18467756:18467880,	18460075	18460192	18460163	18460163	Nonsense_Mutation	G	A	p.W227*
SKCM	TCGA-D3-A8GI-06	NDUFA10	ENST00000485344.2,ENST00000476216.1,ENST00000252711.2	chr2	240900580:240900603:240929490:240929599:240944626:240944712,	240929491	240929599	240929595	240929595	Nonsense_Mutation	G	A	p.Q299*
SKCM	TCGA-D3-A8GI-06	CFL2	ENST00000298159.6	chr14	35182265:35182342:35182459:35182767:35183743:35183783,	35182460	35182767	35182530	35182530	Nonsense_Mutation	G	A	p.R81*
SKCM	TCGA-D3-A8GI-06	LIMCH1	ENST00000313860.7,ENST00000508466.1,ENST00000503057.1,ENST00000509277.1	chr4	41687726:41687847:41689856:41689934:41691543:41691652,	41689857	41689934	41689867	41689867	Nonsense_Mutation	C	T	p.R983*
SKCM	TCGA-D3-A8GI-06	SGMS1	ENST00000429490.1,ENST00000361781.2	chr10	52066901:52067081:52067741:52067908:52071021:52071175,	52067742	52067908	52067767	52067767	Nonsense_Mutation	C	T	p.W346*
SKCM	TCGA-D3-A8GI-06	KLHL2	ENST00000509704.1,ENST00000226725.6,ENST00000514860.1	chr4	166141152:166141211:166149958:166150065:166184348:166184433,166141152:166141211:166149958:166150065:166159929:166159983,	166149959	166150065	166150001	166150001	Nonsense_Mutation	G	A	p.W9*
SKCM	TCGA-D3-A8GI-06	MAGT1	ENST00000358075.6	chrX	77084527:77084732:77086301:77086392:77096742:77096817,	77086302	77086392	77086347	77086347	Nonsense_Mutation	C	T	p.W348*
SKCM	TCGA-D3-A8GI-06	SEC22C	ENST00000264454.3,ENST00000456515.1,ENST00000449617.1,ENST00000273156.7,ENST00000536332.1,ENST00000417572.1,ENST00000451653.1	chr3	42597422:42597487:42599069:42599188:42602608:42602788,	42599070	42599188	42599177	42599177	Nonsense_Mutation	G	A	p.R180*
SKCM	TCGA-D3-A8GI-06	CASC4	ENST00000360824.3,ENST00000345795.2,ENST00000558847.1	chr15	44671887:44671986:44673003:44673174:44705533:44705634,	44673004	44673174	44673111	44673111	Nonsense_Mutation	C	T	p.Q337*
SKCM	TCGA-D3-A8GI-06	ADAMTS10	ENST00000597188.1,ENST00000270328.4	chr19	8662129:8662206:8665811:8666029:8668611:8668768,8662117:8662201:8665811:8666029:8668611:8668768,	8665812	8666029	8666016	8666016	Nonsense_Mutation	C	T	p.W202*
SKCM	TCGA-D3-A8GI-06	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745742	39745742	Nonsense_Mutation	G	A	p.R504*
SKCM	TCGA-D3-A8GI-06	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539951	187539951	Nonsense_Mutation	G	A	p.R2597*
SKCM	TCGA-D3-A8GI-06	SLTM	ENST00000249736.7	chr15	59191001:59191051:59191667:59192082:59193458:59193486,	59191668	59192082	59192038	59192038	Nonsense_Mutation	C	A	p.E230*
SKCM	TCGA-D3-A8GI-06	SLTM	ENST00000380516.2	chr15	59191001:59191051:59191667:59192136:59193458:59193486,	59191668	59192136	59192038	59192038	Nonsense_Mutation	C	A	p.E230*
SKCM	TCGA-D3-A8GI-06	MAGI1	ENST00000483466.1,ENST00000402939.2,ENST00000497477.2,ENST00000460329.2,ENST00000472257.1,ENST00000463103.2,ENST00000330909.8,ENST00000479287.1	chr3	65438932:65439015:65455957:65456159:65464266:65464309,	65455958	65456159	65455999	65455999	Nonsense_Mutation	C	T	p.W306*
SKCM	TCGA-D3-A8GI-06	MAGI1	ENST00000470990.1,ENST00000464060.1	chr3	65438932:65439015:65455957:65456162:65464266:65464309,	65455958	65456162	65455999	65455999	Nonsense_Mutation	C	T	p.W306*
SKCM	TCGA-D3-A8GI-06	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50225056:50225165:50226639:50226704:50230215:50230371,	50226640	50226704	50226659	50226659	Nonsense_Mutation	G	A	p.Q873*
SKCM	TCGA-D3-A8GI-06	ADAMTS17	ENST00000568565.1	chr15	100591776:100591936:100594101:100594259:100603883:100603964,	100594102	100594259	100594219	100594219	Nonsense_Mutation	C	T	p.W726*
SKCM	TCGA-D3-A8GI-06	EXOC2	ENST00000230449.4	chr6	572519:572644:576756:576882:592468:592587,	576757	576882	576766	576766	Nonsense_Mutation	G	A	p.R437*
SKCM	TCGA-D3-A8GI-06	COL6A3	ENST00000353578.4,ENST00000392003.2,ENST00000295550.4,ENST00000409809.1,ENST00000392004.3,ENST00000347401.3	chr2	238285760:238285987:238287278:238287878:238289557:238290142,	238287279	238287878	238287336	238287336	Nonsense_Mutation	G	A	p.Q814*
SKCM	TCGA-D3-A8GI-06	ANO6	ENST00000426898.2,ENST00000423947.3,ENST00000435642.1,ENST00000425752.2,ENST00000320560.8,ENST00000441606.2	chr12	45803139:45803270:45810481:45810687:45814853:45815000,	45810482	45810687	45810625	45810625	Nonsense_Mutation	C	T	p.Q719*
SKCM	TCGA-D3-A8GI-06	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266970	6266970	Nonsense_Mutation	C	T	p.W131*
SKCM	TCGA-D3-A8GI-06	PUS10	ENST00000316752.6,ENST00000407787.1,ENST00000602599.1	chr2	61233691:61233778:61235895:61236150:61238899:61239040,	61235896	61236150	61236063	61236063	Nonsense_Mutation	G	A	p.R72*
SKCM	TCGA-D3-A8GI-06	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9484660:9484764:9484859:9484929:9490936:9491024,	9484860	9484929	9484864	9484864	Nonsense_Mutation	C	T	p.R320*
SKCM	TCGA-D3-A8GI-06	CSRP1	ENST00000526317.1	chr1	201453852:201453917:201454410:201454504:201465319:201465389,	201454411	201454504	201454483	201454483	Nonsense_Mutation	G	A	p.R145*
SKCM	TCGA-D3-A8GI-06	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379528	39379528	Nonsense_Mutation	C	T	p.Q267*
SKCM	TCGA-D3-A8GI-06	KEL	ENST00000355265.2	chr7	142641729:142641828:142643293:142643404:142649595:142649725,	142643294	142643404	142643387	142643387	Nonsense_Mutation	C	T	p.W407*
SKCM	TCGA-D3-A8GI-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36898248	36898248	Nonsense_Mutation	G	A	p.Q945*
SKCM	TCGA-D3-A8GI-06	QRICH1	ENST00000479449.1	chr3	49084501:49084679:49094294:49094476:49095224:49095308,	49094295	49094476	49094385	49094385	Nonsense_Mutation	C	T	p.W416*
SKCM	TCGA-D3-A8GI-06	QRICH1	ENST00000357496.2,ENST00000424300.1,ENST00000395443.2	chr3	49084501:49084679:49094294:49095323:49114141:49114471,	49094295	49095323	49094385	49094385	Nonsense_Mutation	C	T	p.W416*
SKCM	TCGA-D3-A8GI-06	TSPAN8	ENST00000247829.3,ENST00000552128.1,ENST00000546561.1,ENST00000393330.2	chr12	71523110:71523194:71526472:71526604:71531732:71531840,	71526473	71526604	71526505	71526505	Nonsense_Mutation	G	A	p.Q182*
SKCM	TCGA-D3-A8GI-06	DNAH2	ENST00000389173.2,ENST00000575105.1,ENST00000572933.1	chr17	7727151:7727300:7727438:7727622:7727854:7728045,	7727439	7727622	7727619	7727619	Nonsense_Mutation	C	T	p.Q3887*
SKCM	TCGA-D3-A8GI-06	DDX27	ENST00000371764.4,ENST00000462328.1,ENST00000484427.1	chr20	47837988:47838135:47839493:47839553:47839804:47839970,	47839494	47839553	47839533	47839533	Nonsense_Mutation	C	T	p.R125*
SKCM	TCGA-D3-A8GI-06	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000392129.6,ENST00000580248.1	chr1	165697322:165697358:165712403:165712548:165721338:165721406,	165712404	165712548	165712409	165712409	Nonsense_Mutation	G	A	p.R206*
SKCM	TCGA-D3-A8GI-06	SPNS3	ENST00000355530.2,ENST00000575194.1,ENST00000333476.2	chr17	4351449:4351598:4352529:4352682:4356310:4356500,	4352530	4352682	4352532	4352532	Nonsense_Mutation	G	A	p.W258*
SKCM	TCGA-D3-A8GI-06	CUTA	ENST00000607266.1,ENST00000482684.1,ENST00000374484.4,ENST00000479249.1,ENST00000374496.3,ENST00000462802.1,ENST00000465956.1,ENST00000440279.3,ENST00000374500.5,ENST00000494751.1,ENST00000488034.1	chr6	33384525:33384553:33384696:33384746:33384873:33384919,	33384697	33384746	33384712	33384712	Nonsense_Mutation	A	T	p.L152*
SKCM	TCGA-D3-A8GI-06	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681261	161681261	Nonsense_Mutation	C	T	p.Q172*
SKCM	TCGA-D3-A8GI-06	FCRLA	ENST00000540926.1,ENST00000367953.3,ENST00000367959.2,ENST00000236938.6	chr1	161680549:161680702:161680997:161681264:161682874:161683242,161680549:161680702:161680997:161681264:161681723:161682008,	161680998	161681264	161681261	161681261	Nonsense_Mutation	C	T	p.Q172*
SKCM	TCGA-D3-A8GI-06	ZXDC	ENST00000389709.3	chr3	126158474:126158570:126160607:126160789:126178495:126178580,	126160608	126160789	126160619	126160619	Nonsense_Mutation	G	A	p.Q795*
SKCM	TCGA-D3-A8GI-06	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41192889	41192889	Nonsense_Mutation	C	T	p.Q625*
SKCM	TCGA-D3-A8GI-06	TREM2	ENST00000373122.4	chr6	41126244:41126518:41126610:41126844:41127529:41127620,	41126611	41126844	41126689	41126689	Nonsense_Mutation	C	T	p.W213*
SKCM	TCGA-D3-A8GI-06	TREM2	ENST00000373113.3	chr6	41126244:41126518:41126610:41126804:41127529:41127620,	41126611	41126804	41126689	41126689	Nonsense_Mutation	C	T	p.W213*
SKCM	TCGA-D3-A8GI-06	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266969	6266969	Nonsense_Mutation	C	T	p.W131*
SKCM	TCGA-D3-A8GI-06	SLC9C2	ENST00000536496.1,ENST00000367714.3	chr1	173552644:173552761:173556803:173556969:173567042:173567171,	173556804	173556969	173556886	173556886	Nonsense_Mutation	C	T	p.W147*
SKCM	TCGA-D3-A8GI-06	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51214709:51214823:51219235:51219451:51221280:51221350,	51219236	51219451	51219427	51219427	Nonsense_Mutation	G	A	p.Q1587*
SKCM	TCGA-D3-A5GS-06	ACVRL1	ENST00000552678.1,ENST00000388922.4,ENST00000419526.2,ENST00000550683.1	chr12	52309231:52309284:52309819:52310017:52312768:52312899,	52309820	52310017	52309989	52309989	Nonsense_Mutation	G	A	p.W420*
SKCM	TCGA-D3-A5GS-06	FCGR2A	ENST00000536731.1	chr1	161475776:161475797:161476123:161476497:161479609:161479689,	161476124	161476497	161476237	161476237	Nonsense_Mutation	C	T	p.Q74*
SKCM	TCGA-D3-A5GS-06	FCGR2A	ENST00000367972.4,ENST00000467654.1	chr1	161475776:161475797:161476126:161476381:161479609:161479689,	161476127	161476381	161476237	161476237	Nonsense_Mutation	C	T	p.Q74*
SKCM	TCGA-D3-A5GS-06	FCGR2A	ENST00000483665.2	chr1	161475776:161475797:161476126:161476497:161479609:161479689,	161476127	161476497	161476237	161476237	Nonsense_Mutation	C	T	p.Q74*
SKCM	TCGA-D3-A5GS-06	FCGR2A	ENST00000271450.6	chr1	161475776:161475797:161476123:161476381:161479609:161479689,	161476124	161476381	161476237	161476237	Nonsense_Mutation	C	T	p.Q74*
SKCM	TCGA-D3-A5GS-06	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1	chr5	96235824:96235893:96237209:96237385:96237977:96238057,	96237210	96237385	96237351	96237351	Nonsense_Mutation	C	T	p.Q572*
SKCM	TCGA-D3-A5GS-06	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000436487.1,ENST00000443646.1,ENST00000325123.4	chr3	42569542:42569615:42572270:42572424:42572962:42573023,	42572271	42572424	42572422	42572422	Nonsense_Mutation	G	A	p.W222*
SKCM	TCGA-D3-A5GS-06	KLK2	ENST00000594174.1	chr19	51376713:51376775:51377976:51378222:51379727:51379813,	51377977	51378222	51378017	51378017	Nonsense_Mutation	G	A	p.W29*
SKCM	TCGA-D3-A5GS-06	KLK2	ENST00000597439.1,ENST00000600755.1,ENST00000325321.3,ENST00000358049.4	chr19	51376438:51376510:51377976:51378136:51379727:51379813,51376713:51376775:51377976:51378136:51379727:51379813,	51377977	51378136	51378017	51378017	Nonsense_Mutation	G	A	p.W29*
SKCM	TCGA-EE-A2MI-06	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922197	150922197	Nonsense_Mutation	G	A	p.Q2831*
SKCM	TCGA-EE-A2MI-06	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000357304.4	chr9	134319612:134319715:134321787:134322029:134322471:134322593,	134321788	134322029	134321958	134321958	Nonsense_Mutation	C	T	p.R262*
SKCM	TCGA-EE-A2MI-06	DMXL2	ENST00000560421.1,ENST00000543779.2,ENST00000449909.3,ENST00000251076.5	chr15	51856321:51856457:51857284:51857363:51860683:51860755,	51857285	51857363	51857296	51857296	Nonsense_Mutation	C	T	p.W118*
SKCM	TCGA-EE-A2MI-06	DHRS12	ENST00000490949.1,ENST00000280056.2,ENST00000218981.1	chr13	52365300:52365393:52373669:52373803:52378189:52378234,	52373670	52373803	52373720	52373720	Nonsense_Mutation	C	A	p.E26*
SKCM	TCGA-EE-A2MI-06	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3	chr9	119858322:119858430:119903604:119903757:119976636:119976832,	119903605	119903757	119903608	119903608	Nonsense_Mutation	G	A	p.R389*
SKCM	TCGA-EE-A2MI-06	SLC4A9	ENST00000507527.1,ENST00000230993.6	chr5	139739799:139740051:139740324:139740557:139740838:139740952,	139740325	139740557	139740441	139740441	Nonsense_Mutation	G	A	p.W116*
SKCM	TCGA-EE-A2MI-06	SLC4A9	ENST00000506545.1,ENST00000432095.2	chr5	139739799:139740051:139740396:139740557:139740838:139740952,	139740397	139740557	139740441	139740441	Nonsense_Mutation	G	A	p.W116*
SKCM	TCGA-EE-A2MI-06	FAM19A1	ENST00000478136.1,ENST00000496687.1	chr3	68466432:68466570:68587906:68588031:68593636:68594772,	68587907	68588031	68587994	68587994	Nonsense_Mutation	G	A	p.W116*
SKCM	TCGA-EE-A2MI-06	DNMT3B	ENST00000348286.2,ENST00000328111.2,ENST00000353855.2,ENST00000201963.3,ENST00000344505.4	chr20	31372563:31372665:31374307:31374433:31375035:31375257,	31374308	31374433	31374317	31374317	Nonsense_Mutation	C	T	p.R106*
SKCM	TCGA-EE-A2MI-06	PFKL	ENST00000466134.1,ENST00000397961.2,ENST00000349048.4,ENST00000403390.1,ENST00000491298.1,ENST00000496824.1	chr21	45730888:45730966:45731987:45732177:45732860:45733026,	45731988	45732177	45732069	45732069	Nonsense_Mutation	C	T	p.Q154*
SKCM	TCGA-EE-A2MI-06	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751222	13751222	Nonsense_Mutation	G	A	p.Q3726*
SKCM	TCGA-EE-A2MI-06	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505078.1,ENST00000312216.8	chr5	94114814:94114868:94134717:94134837:94204037:94204157,	94134718	94134837	94134766	94134766	Nonsense_Mutation	C	T	p.W836*
SKCM	TCGA-EE-A2MI-06	MRO	ENST00000431965.2,ENST00000588444.1	chr18	48325660:48325760:48326405:48326513:48331523:48331706,	48326406	48326513	48326495	48326495	Nonsense_Mutation	G	A	p.Q202*
SKCM	TCGA-EE-A2MQ-06	SLC25A42	ENST00000600275.1	chr19	19212603:19212695:19217077:19217194:19218702:19218797,	19217078	19217194	19217190	19217190	Nonsense_Mutation	G	T	p.E165*
SKCM	TCGA-EE-A2MQ-06	SIGLEC11	ENST00000447370.2	chr19	50455554:50455651:50461539:50461827:50461899:50462157,	50461540	50461827	50461731	50461731	Nonsense_Mutation	C	T	p.W487*
SKCM	TCGA-FS-A1ZD-06	ALKBH2	ENST00000429722.2,ENST00000343075.3	chr12	109526026:109526317:109527813:109528012:109530311:109530557,	109527814	109528012	109527892	109527892	Nonsense_Mutation	C	T	p.W134*
SKCM	TCGA-FS-A1ZD-06	NPR1	ENST00000368680.3	chr1	153662759:153662858:153665581:153665673:153665827:153666468,	153665582	153665673	153665653	153665653	Nonsense_Mutation	C	T	p.R1035*
SKCM	TCGA-GN-A4U5-01	FAAH2	ENST00000374900.4	chrX	57358030:57358240:57367703:57367823:57405083:57405219,	57367704	57367823	57367775	57367775	Nonsense_Mutation	C	T	p.R232*
SKCM	TCGA-GN-A4U5-01	RGS5	ENST00000531954.1,ENST00000367903.3,ENST00000313961.5	chr1	163117263:163117293:163122339:163122506:163131704:163131766,	163122340	163122506	163122442	163122442	Nonsense_Mutation	C	T	p.W94*
SKCM	TCGA-GN-A4U5-01	RGS5	ENST00000530507.1	chr1	163117263:163117293:163122327:163122506:163131704:163131766,	163122328	163122506	163122442	163122442	Nonsense_Mutation	C	T	p.W94*
SKCM	TCGA-GN-A4U5-01	COX7C	ENST00000515763.1	chr5	85913789:85913947:85915169:85915259:85916484:85916583,	85915170	85915259	85915198	85915198	Nonsense_Mutation	G	A	p.W35*
SKCM	TCGA-GN-A4U5-01	COX7C	ENST00000511472.1	chr5	85913802:85913870:85915169:85915313:85916484:85916583,	85915170	85915313	85915198	85915198	Nonsense_Mutation	G	A	p.W35*
SKCM	TCGA-GN-A4U5-01	COX7C	ENST00000513124.1	chr5	85913802:85913870:85915169:85915695:85916484:85916583,	85915170	85915695	85915198	85915198	Nonsense_Mutation	G	A	p.W35*
SKCM	TCGA-GN-A4U5-01	ADCK2	ENST00000072869.4,ENST00000476491.1,ENST00000498423.1,ENST00000483369.1	chr7	140374410:140374557:140378954:140379083:140380841:140380937,	140378955	140379083	140378994	140378994	Nonsense_Mutation	C	T	p.Q374*
SKCM	TCGA-D3-A3BZ-06	PRICKLE2	ENST00000564377.1,ENST00000295902.6	chr3	64132505:64133378:64138857:64139044:64142837:64143041,	64138858	64139044	64139008	64139008	Nonsense_Mutation	G	A	p.R213*
SKCM	TCGA-D9-A3Z4-01	USP30	ENST00000392784.2,ENST00000377883.3,ENST00000257548.5	chr12	109511242:109511337:109519138:109519198:109519737:109519824,	109519139	109519198	109519148	109519148	Nonsense_Mutation	C	T	p.R244*
SKCM	TCGA-EE-A3AC-06	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51686091	51686091	Nonsense_Mutation	G	A	p.R267*
SKCM	TCGA-EE-A3AC-06	ZSWIM5	ENST00000359600.5	chr1	45516745:45516925:45524280:45524431:45525770:45525919,	45524281	45524431	45524428	45524428	Nonsense_Mutation	G	A	p.R369*
SKCM	TCGA-EE-A3AC-06	DPY19L1	ENST00000310974.4	chr7	35009044:35009144:35013125:35013217:35029495:35029553,	35013126	35013217	35013200	35013200	Nonsense_Mutation	C	T	p.W207*
SKCM	TCGA-EE-A3AC-06	TRMT61B	ENST00000306108.5	chr2	29073193:29073271:29073937:29074164:29075273:29075365,	29073938	29074164	29074031	29074031	Nonsense_Mutation	G	A	p.Q407*
SKCM	TCGA-EE-A3AC-06	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315504	96315504	Nonsense_Mutation	C	T	p.Q228*
SKCM	TCGA-EE-A3AC-06	EI24	ENST00000531350.1	chr11	125445204:125445304:125446150:125446211:125447399:125447466,125442353:125442465:125446150:125446211:125447399:125447466,	125446151	125446211	125446179	125446179	Nonsense_Mutation	C	T	p.Q73*
SKCM	TCGA-EE-A3AC-06	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380832	380832	Nonsense_Mutation	G	A	p.W959*
SKCM	TCGA-EE-A3AC-06	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380832	380832	Nonsense_Mutation	G	A	p.W959*
SKCM	TCGA-EE-A3AC-06	FTH1	ENST00000533138.1	chr11	61732309:61732363:61732458:61732987:61734783:61734843,	61732459	61732987	61732864	61732864	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A3AC-06	FTH1	ENST00000534180.1,ENST00000529548.1	chr11	61732471:61732584:61732840:61733049:61734783:61734843,	61732841	61733049	61732864	61732864	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A3AC-06	FTH1	ENST00000530019.1	chr11	61732471:61732584:61732840:61732987:61734783:61734843,61727293:61727376:61732840:61732987:61734783:61734843,	61732841	61732987	61732864	61732864	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A3AC-06	SEZ6L2	ENST00000537485.1,ENST00000350527.3,ENST00000568407.2,ENST00000308713.5,ENST00000346932.5	chr16	29889607:29889746:29891184:29891385:29896906:29897070,	29891185	29891385	29891210	29891210	Nonsense_Mutation	C	T	p.W516*
SKCM	TCGA-EE-A3AC-06	ABCC1	ENST00000399408.2,ENST00000575422.1,ENST00000399410.3,ENST00000572882.1,ENST00000345148.5	chr16	16173208:16173335:16177222:16177399:16184261:16184445,16173208:16173335:16177222:16177399:16180680:16180815,	16177223	16177399	16177255	16177255	Nonsense_Mutation	G	A	p.W716*
SKCM	TCGA-EE-A3AC-06	SELP	ENST00000367788.2,ENST00000426706.2,ENST00000263686.6,ENST00000367793.2	chr1	169576186:169576372:169578741:169578927:169581454:169581640,169576186:169576372:169578741:169578927:169580729:169580915,	169578742	169578927	169578856	169578856	Nonsense_Mutation	G	A	p.Q407*
SKCM	TCGA-EE-A3AC-06	SAE1	ENST00000270225.7,ENST00000414294.2,ENST00000413379.3,ENST00000594144.1,ENST00000596995.1,ENST00000392776.3,ENST00000597808.1,ENST00000600706.1,ENST00000594526.1	chr19	47646750:47646862:47653458:47653632:47656154:47656257,	47653459	47653632	47653513	47653513	Nonsense_Mutation	C	T	p.R89*
SKCM	TCGA-EE-A3AC-06	IL36G	ENST00000259205.4,ENST00000447128.1	chr2	113735605:113735655:113736196:113736270:113737585:113737725,113735605:113735655:113736196:113736270:113736797:113736857,	113736197	113736270	113736264	113736264	Nonsense_Mutation	C	T	p.Q17*
SKCM	TCGA-D3-A2JF-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904144	5904144	Nonsense_Mutation	C	T	p.Q452*
SKCM	TCGA-D3-A2JF-06	ANKEF1	ENST00000488991.1,ENST00000378392.1,ENST00000378380.3	chr20	10023769:10023969:10025041:10025191:10026221:10026345,	10025042	10025191	10025099	10025099	Nonsense_Mutation	C	T	p.R202*
SKCM	TCGA-D3-A2JF-06	CHRNA1	ENST00000348749.5,ENST00000409219.1,ENST00000409323.1	chr2	175618946:175619142:175622293:175622403:175624058:175624103,	175622294	175622403	175622398	175622398	Nonsense_Mutation	C	T	p.W80*
SKCM	TCGA-D3-A2JF-06	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17752036:17752180:17755601:17755695:17764725:17765018,	17755602	17755695	17755626	17755626	Nonsense_Mutation	G	A	p.R119*
SKCM	TCGA-D3-A2JF-06	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118495649:118495775:118498020:118499366:118501923:118502196,	118498021	118499366	118499023	118499023	Nonsense_Mutation	G	A	p.W495*
SKCM	TCGA-D3-A2JF-06	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662665	40662665	Nonsense_Mutation	C	T	p.R811*
SKCM	TCGA-D3-A2JF-06	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21143890:21144031:21151592:21151691:21154109:21154191,	21151593	21151691	21151665	21151665	Nonsense_Mutation	C	T	p.W1382*
SKCM	TCGA-D3-A2JF-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-D3-A2JF-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-D3-A2JF-06	FNBP4	ENST00000263773.5,ENST00000528388.1,ENST00000534003.1,ENST00000527894.1	chr11	47754088:47754222:47755576:47755681:47758167:47758292,	47755577	47755681	47755678	47755678	Nonsense_Mutation	G	A	p.Q529*
SKCM	TCGA-D3-A2JF-06	COPS3	ENST00000577210.1,ENST00000578317.1,ENST00000584216.1,ENST00000539941.2,ENST00000268717.5,ENST00000486810.1	chr17	17158200:17158259:17165279:17165420:17168115:17168295,17163711:17163788:17165279:17165420:17168115:17168295,	17165280	17165420	17165341	17165341	Nonsense_Mutation	A	T	p.L214*
SKCM	TCGA-D3-A2JF-06	ANGEL2	ENST00000481918.1	chr1	213181551:213181808:213186434:213186760:213188567:213188835,	213186435	213186760	213186679	213186679	Nonsense_Mutation	C	T	p.W47*
SKCM	TCGA-D3-A2JF-06	CCDC36	ENST00000452691.2,ENST00000296449.5,ENST00000366429.2,ENST00000438782.1	chr3	49249198:49249269:49273980:49274155:49278658:49278822,	49273981	49274155	49274001	49274001	Nonsense_Mutation	G	A	p.W26*
SKCM	TCGA-D3-A2JF-06	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3	chr20	46275816:46276110:46277748:46277841:46279725:46280020,	46277749	46277841	46277839	46277839	Nonsense_Mutation	C	T	p.Q1213*
SKCM	TCGA-D3-A2JF-06	NCOA3	ENST00000371998.3	chr20	46275816:46276110:46277748:46277853:46279725:46280020,	46277749	46277853	46277839	46277839	Nonsense_Mutation	C	T	p.Q1213*
SKCM	TCGA-D3-A2JF-06	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135312720:135312859:135315091:135315218:135320328:135320405,	135315092	135315218	135315146	135315146	Nonsense_Mutation	C	T	p.Q1663*
SKCM	TCGA-D3-A2JF-06	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873660	35873660	Nonsense_Mutation	C	T	p.R206*
SKCM	TCGA-D3-A2JF-06	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288614	74288614	Nonsense_Mutation	G	A	p.Q566*
SKCM	TCGA-D3-A1QB-06	ERBB4	ENST00000484594.1,ENST00000342788.4,ENST00000436443.1	chr2	212495186:212495319:212522478:212522553:212530047:212530079,	212522479	212522553	212522512	212522512	Nonsense_Mutation	C	T	p.W638*
SKCM	TCGA-D3-A1QB-06	NVL	ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000361463.3,ENST00000469075.1,ENST00000281701.6	chr1	224475476:224475695:224477185:224477435:224481968:224482043,	224477186	224477435	224477257	224477257	Nonsense_Mutation	C	A	p.E502*
SKCM	TCGA-D3-A1QB-06	GOT2	ENST00000564400.1,ENST00000245206.5,ENST00000496461.1	chr16	58752473:58752592:58753099:58753159:58756053:58756182,	58753100	58753159	58753135	58753135	Nonsense_Mutation	C	A	p.G134*
SKCM	TCGA-D3-A1QB-06	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11000964	11000964	Nonsense_Mutation	C	T	p.R539*
SKCM	TCGA-D3-A1QB-06	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11000964	11000964	Nonsense_Mutation	C	T	p.R539*
SKCM	TCGA-GN-A268-06	AOAH	ENST00000535891.1,ENST00000487014.1,ENST00000480201.1,ENST00000495942.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36589044:36589081:36616179:36616262:36633944:36634036,	36616180	36616262	36616230	36616230	Nonsense_Mutation	C	T	p.W324*
SKCM	TCGA-GN-A268-06	GRHL1	ENST00000324883.5,ENST00000464418.1,ENST00000324907.9,ENST00000405379.2,ENST00000472167.1	chr2	10104363:10104475:10105415:10105510:10126251:10126410,	10105416	10105510	10105488	10105488	Nonsense_Mutation	G	A	p.W363*
SKCM	TCGA-GN-A268-06	CBX4	ENST00000269397.4	chr17	77809444:77809511:77811635:77811701:77812809:77812853,	77811636	77811701	77811688	77811688	Nonsense_Mutation	C	A	p.E43*
SKCM	TCGA-GN-A268-06	NCAPD2	ENST00000539714.1,ENST00000315579.5	chr12	6604241:6604391:6618882:6618958:6619794:6619886,6604241:6604391:6618882:6618958:6619240:6619299,	6618883	6618958	6618900	6618900	Nonsense_Mutation	C	T	p.R49*
SKCM	TCGA-GN-A268-06	NPHS2	ENST00000367616.4,ENST00000367615.4	chr1	179528813:179528896:179530423:179530496:179533824:179533928,	179530424	179530496	179530463	179530463	Nonsense_Mutation	G	A	p.R138*
SKCM	TCGA-D3-A5GR-06	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98643320:98643424:98645306:98645505:98647185:98647332,	98645307	98645505	98645495	98645495	Nonsense_Mutation	G	A	p.Q348*
SKCM	TCGA-D3-A5GR-06	PIKFYVE	ENST00000264380.4,ENST00000407449.1,ENST00000422495.1,ENST00000452564.1	chr2	209141435:209141554:209142260:209142432:209150449:209150524,	209142261	209142432	209142372	209142372	Nonsense_Mutation	C	T	p.Q185*
SKCM	TCGA-D3-A5GR-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903202	5903202	Nonsense_Mutation	C	T	p.Q138*
SKCM	TCGA-D3-A5GR-06	STIM1	ENST00000527651.1,ENST00000533977.1,ENST00000300737.4	chr11	4091255:4091433:4095731:4095909:4103413:4103451,	4095732	4095909	4095772	4095772	Nonsense_Mutation	G	T	p.E278*
SKCM	TCGA-D3-A5GR-06	SRSF5	ENST00000557460.1,ENST00000556587.1	chr14	70235329:70235391:70235514:70235968:70237183:70237257,	70235515	70235968	70235600	70235600	Nonsense_Mutation	C	T	p.R95*
SKCM	TCGA-D3-A5GR-06	SRSF5	ENST00000554021.1,ENST00000553635.1,ENST00000556184.1,ENST00000394366.2,ENST00000555547.1,ENST00000553521.1,ENST00000555349.1,ENST00000451983.2,ENST00000557154.1,ENST00000553369.1	chr14	70235329:70235391:70235514:70235613:70235898:70235968,	70235515	70235613	70235600	70235600	Nonsense_Mutation	C	T	p.R95*
SKCM	TCGA-D3-A5GR-06	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41516417:41516658:41539144:41539215:41550853:41550930,	41539145	41539215	41539149	41539149	Nonsense_Mutation	C	T	p.W1005*
SKCM	TCGA-D3-A5GR-06	DDX17	ENST00000216019.7	chr22	38881882:38882445:38883883:38888120:38889714:38889776,	38883884	38888120	38884115	38884115	Nonsense_Mutation	C	A	p.E485*
SKCM	TCGA-D9-A6EG-06	NKAIN1	ENST00000373736.2,ENST00000530145.1,ENST00000263693.1	chr1	31656663:31656861:31658093:31658174:31660896:31661000,	31658094	31658174	31658142	31658142	Nonsense_Mutation	C	T	p.W75*
SKCM	TCGA-EB-A44O-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357541	50357541	Nonsense_Mutation	A	C	p.L467*
SKCM	TCGA-EB-A44O-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751345	102751345	Nonsense_Mutation	C	T	p.Q136*
SKCM	TCGA-EB-A44O-01	EWSR1	ENST00000332035.6,ENST00000455726.1	chr22	29674119:29674205:29682911:29683123:29684594:29684668,	29682912	29683123	29683075	29683075	Nonsense_Mutation	C	T	p.Q249*
SKCM	TCGA-EB-A44O-01	MOG	ENST00000494692.1,ENST00000490427.1,ENST00000396704.3	chr6	29635680:29635701:29637950:29637998:29638477:29638498,	29637951	29637998	29637989	29637989	Nonsense_Mutation	A	T	p.K211*
SKCM	TCGA-EB-A44O-01	CARD14	ENST00000570421.1,ENST00000573754.1,ENST00000344227.2,ENST00000573882.1,ENST00000392434.2,ENST00000571450.1,ENST00000571861.1	chr17	78162175:78162343:78163551:78163671:78164572:78164698,	78163552	78163671	78163600	78163600	Nonsense_Mutation	C	T	p.R298*
SKCM	TCGA-EB-A44O-01	APBB2	ENST00000506352.1,ENST00000295974.8,ENST00000513140.1	chr4	40946881:40947090:41015599:41016415:41035252:41035321,40946881:40947087:41015599:41016415:41035252:41035321,	41015600	41016415	41015864	41015864	Nonsense_Mutation	G	A	p.Q191*
SKCM	TCGA-EB-A44O-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677048	73677048	Nonsense_Mutation	C	T	p.Q1131*
SKCM	TCGA-EB-A44O-01	SEPT2	ENST00000360051.3,ENST00000391973.2,ENST00000482304.1,ENST00000441533.1,ENST00000428524.1,ENST00000401990.1,ENST00000457335.1,ENST00000402092.2,ENST00000473479.1,ENST00000436795.1,ENST00000437066.1,ENST00000391971.2,ENST00000420786.1,ENST00000467971.1,ENST00000475474.1,ENST00000366210.2,ENST00000434955.1,ENST00000449239.1,ENST00000445030.1	chr2	242254861:242255025:242265407:242265528:242274540:242274561,242255373:242255397:242265407:242265528:242274540:242274561,242263630:242263656:242265407:242265528:242274540:242274561,	242265408	242265528	242265483	242265483	Nonsense_Mutation	C	T	p.R29*
SKCM	TCGA-EB-A44O-01	SEPT2	ENST00000443492.1	chr2	242263630:242263656:242265381:242265528:242274540:242274561,	242265382	242265528	242265483	242265483	Nonsense_Mutation	C	T	p.R29*
SKCM	TCGA-EB-A44O-01	GPC2	ENST00000471717.1	chr7	99772307:99772388:99773829:99773988:99774656:99774990,99773194:99773517:99773829:99773988:99774656:99774990,	99773830	99773988	99773899	99773899	Nonsense_Mutation	G	A	p.R86*
SKCM	TCGA-EB-A44O-01	VIL1	ENST00000454069.1	chr2	219288999:219289074:219290337:219290522:219292687:219292796,	219290338	219290522	219290485	219290485	Nonsense_Mutation	C	T	p.Q100*
SKCM	TCGA-EB-A44O-01	VIL1	ENST00000440053.1,ENST00000248444.5	chr2	219288999:219289074:219290337:219290534:219292687:219292796,	219290338	219290534	219290485	219290485	Nonsense_Mutation	C	T	p.Q100*
SKCM	TCGA-RP-A690-06	FLNA	ENST00000490936.1,ENST00000369850.3,ENST00000360319.4,ENST00000369856.3,ENST00000422373.1,ENST00000438732.1,ENST00000420627.1	chrX	153582748:153582851:153582983:153583079:153583192:153583257,	153582984	153583079	153583052	153583052	Nonsense_Mutation	G	A	p.Q1741*
SKCM	TCGA-RP-A690-06	TEAD4	ENST00000543035.1,ENST00000359864.2,ENST00000358409.2	chr12	3069113:3069206:3103903:3104158:3120169:3120234,	3103904	3104158	3103971	3103971	Nonsense_Mutation	G	A	p.W13*
SKCM	TCGA-EE-A29H-06	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057635	145057635	Nonsense_Mutation	G	A	p.Q708*
SKCM	TCGA-EE-A29H-06	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057635	145057635	Nonsense_Mutation	G	A	p.Q708*
SKCM	TCGA-EE-A29H-06	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748891	43748891	Nonsense_Mutation	G	A	p.R634*
SKCM	TCGA-EE-A29H-06	BIN2	ENST00000267012.4,ENST00000544402.1,ENST00000604560.1	chr12	51693390:51693498:51695803:51695899:51696469:51696564,	51695804	51695899	51695882	51695882	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-EE-A2MM-06	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000538472.1,ENST00000420015.2	chr16	14704521:14704666:14711446:14711507:14720962:14720993,	14711447	14711507	14711453	14711453	Nonsense_Mutation	G	A	p.R128*
SKCM	TCGA-EE-A2MM-06	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169512080	169512080	Nonsense_Mutation	C	A	p.E755*
SKCM	TCGA-EE-A2MM-06	SERPING1	ENST00000378323.4	chr11	57365743:57365794:57367336:57367850:57369507:57369642,	57367337	57367850	57367646	57367646	Nonsense_Mutation	C	T	p.Q150*
SKCM	TCGA-EE-A2MM-06	SERPING1	ENST00000378324.2	chr11	57365743:57365794:57367351:57367850:57369507:57369642,57365162:57365195:57367351:57367850:57369507:57369642,	57367352	57367850	57367646	57367646	Nonsense_Mutation	C	T	p.Q150*
SKCM	TCGA-EE-A2MM-06	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819167	20819167	Nonsense_Mutation	G	A	p.R364*
SKCM	TCGA-EE-A2MM-06	GADD45B	ENST00000215631.4	chr19	2476526:2476628:2477026:2477249:2477485:2477565,	2477027	2477249	2477115	2477115	Nonsense_Mutation	C	T	p.Q79*
SKCM	TCGA-EE-A2MM-06	ERGIC3	ENST00000357394.4,ENST00000447986.1,ENST00000416206.1,ENST00000348547.2,ENST00000279052.6	chr20	34143977:34144042:34144743:34144880:34144964:34144987,	34144744	34144880	34144810	34144810	Nonsense_Mutation	C	T	p.Q316*
SKCM	TCGA-EE-A2MM-06	ERGIC3	ENST00000451605.1	chr20	34143977:34144042:34144725:34144880:34144964:34144987,	34144726	34144880	34144810	34144810	Nonsense_Mutation	C	T	p.Q316*
SKCM	TCGA-EE-A2MM-06	ERGIC3	ENST00000442139.1	chr20	34143977:34144042:34144647:34144880:34144964:34144987,	34144648	34144880	34144810	34144810	Nonsense_Mutation	C	T	p.Q316*
SKCM	TCGA-FR-A69P-06	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184931615	184931615	Nonsense_Mutation	C	T	p.Q542*
SKCM	TCGA-FR-A69P-06	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151246960:151247050:151271143:151271311:151336589:151336742,	151271144	151271311	151271270	151271270	Nonsense_Mutation	C	T	p.W2412*
SKCM	TCGA-EE-A2A6-06	ART3	ENST00000355810.4,ENST00000341029.5,ENST00000513494.1,ENST00000349321.3	chr4	76997033:76997111:77002976:77003688:77018796:77018829,	77002977	77003688	77003601	77003601	Nonsense_Mutation	C	T	p.Q232*
SKCM	TCGA-EE-A2A6-06	SLC6A13	ENST00000343164.4,ENST00000445055.2	chr12	336730:336834:344255:344390:346323:346407,	344256	344390	344336	344336	Nonsense_Mutation	G	A	p.R251*
SKCM	TCGA-ER-A19J-06	CCDC74B	ENST00000409943.3,ENST00000392984.3,ENST00000310463.6	chr2	130897595:130897669:130897751:130897944:130898730:130898869,	130897752	130897944	130897757	130897757	Nonsense_Mutation	G	A	p.Q393*
SKCM	TCGA-RP-A694-06	C19orf57	ENST00000346736.2,ENST00000454313.1,ENST00000586783.1	chr19	13996773:13996868:14000000:14001275:14003598:14003703,	14000001	14001275	14001203	14001203	Nonsense_Mutation	G	A	p.Q156*
SKCM	TCGA-RP-A694-06	TNIK	ENST00000284483.8,ENST00000470834.1,ENST00000369326.5,ENST00000436636.2,ENST00000357327.5	chr3	170843700:170843940:170846502:170846667:170855979:170856168,	170846503	170846667	170846538	170846538	Nonsense_Mutation	G	A	p.R580*
SKCM	TCGA-RP-A694-06	LUZP2	ENST00000336930.6,ENST00000533227.1	chr11	25004671:25004839:25071583:25071676:25098874:25098952,	25071584	25071676	25071620	25071620	Nonsense_Mutation	C	T	p.Q182*
SKCM	TCGA-RP-A694-06	C1RL	ENST00000537833.1,ENST00000266542.4,ENST00000534969.1	chr12	7252281:7252403:7252496:7252622:7254493:7254681,7252281:7252356:7252496:7252622:7254493:7254621,	7252497	7252622	7252512	7252512	Nonsense_Mutation	G	A	p.Q201*
SKCM	TCGA-RP-A694-06	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186101459:186101541:186105799:186106069:186106629:186106800,	186105800	186106069	186106021	186106021	Nonsense_Mutation	C	T	p.R4512*
SKCM	TCGA-RP-A694-06	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854290	40854290	Nonsense_Mutation	C	T	p.W35*
SKCM	TCGA-YD-A9TA-06	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463209	5463209	Nonsense_Mutation	C	T	p.W269*
SKCM	TCGA-YD-A9TA-06	CARD10	ENST00000403299.1,ENST00000251973.5,ENST00000406271.3,ENST00000437756.1	chr22	37891523:37891593:37891766:37892010:37892455:37892567,	37891767	37892010	37891771	37891771	Nonsense_Mutation	G	A	p.Q767*
SKCM	TCGA-YD-A9TA-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
SKCM	TCGA-YD-A9TA-06	TOP2B	ENST00000413971.1,ENST00000264331.4,ENST00000540199.1,ENST00000435706.2,ENST00000542520.1	chr3	25651058:25651203:25654005:25654200:25656695:25656779,	25654006	25654200	25654107	25654107	Nonsense_Mutation	G	A	p.Q1224*
SKCM	TCGA-YD-A9TA-06	RINT1	ENST00000257700.2,ENST00000497979.1	chr7	105204179:105204394:105205723:105205904:105205976:105206095,	105205724	105205904	105205743	105205743	Nonsense_Mutation	C	T	p.Q636*
SKCM	TCGA-YD-A9TA-06	CR2	ENST00000367057.3,ENST00000367058.3,ENST00000458541.2	chr1	207648192:207648561:207649578:207649764:207651229:207651415,	207649579	207649764	207649738	207649738	Nonsense_Mutation	G	A	p.W959*
SKCM	TCGA-YD-A9TA-06	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70541738:70541914:70550736:70550879:70550969:70551093,	70550737	70550879	70550877	70550877	Nonsense_Mutation	C	T	p.Q809*
SKCM	TCGA-YD-A9TA-06	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000401921.1,ENST00000523867.1,ENST00000461159.2	chr7	18806728:18806778:18832967:18833075:18868783:18868839,	18832968	18833075	18832987	18832987	Nonsense_Mutation	G	A	p.W742*
SKCM	TCGA-YD-A9TA-06	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42355906	42355906	Nonsense_Mutation	T	A	p.C26*
SKCM	TCGA-YD-A9TA-06	ABCC3	ENST00000510891.1,ENST00000513745.1,ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48752991:48753136:48753243:48753451:48753638:48753650,	48753244	48753451	48753368	48753368	Nonsense_Mutation	G	A	p.W995*
SKCM	TCGA-YD-A9TA-06	PRKCB	ENST00000303531.7	chr16	24196851:24196888:24202410:24202551:24225978:24231932,	24202411	24202551	24202528	24202528	Nonsense_Mutation	C	T	p.Q614*
SKCM	TCGA-YD-A9TA-06	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41865505:41865665:41865876:41866013:41870083:41870171,	41865877	41866013	41865900	41865900	Nonsense_Mutation	G	A	p.W723*
SKCM	TCGA-YD-A9TA-06	STK17B	ENST00000263955.4,ENST00000409228.1	chr2	197008283:197008410:197010634:197010779:197021162:197021375,	197010635	197010779	197010674	197010674	Nonsense_Mutation	A	T	p.Y147*
SKCM	TCGA-YD-A9TA-06	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530601	150530601	Nonsense_Mutation	G	A	p.W786*
SKCM	TCGA-YD-A9TA-06	UBXN4	ENST00000272638.9,ENST00000490163.1,ENST00000471246.1	chr2	136530016:136530117:136533818:136533921:136536517:136536649,	136533819	136533921	136533835	136533835	Nonsense_Mutation	C	T	p.Q323*
SKCM	TCGA-YD-A9TA-06	MUC4	ENST00000466475.1,ENST00000477086.1,ENST00000308466.8,ENST00000346145.4,ENST00000477756.1,ENST00000339251.5,ENST00000463781.3,ENST00000415455.1,ENST00000478156.1,ENST00000392407.2,ENST00000479406.1,ENST00000349607.4	chr3	195495920:195496023:195497086:195497242:195498522:195498611,	195497087	195497242	195497187	195497187	Nonsense_Mutation	C	T	p.W4433*
SKCM	TCGA-YD-A9TA-06	SEL1L2	ENST00000492548.1,ENST00000475649.1	chr20	13830836:13830965:13845812:13845887:13850148:13850236,	13845813	13845887	13845832	13845832	Nonsense_Mutation	C	T	p.W542*
SKCM	TCGA-YD-A9TA-06	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4,ENST00000460500.1	chr1	85128137:85128213:85130099:85130235:85131804:85131915,	85130100	85130235	85130205	85130205	Nonsense_Mutation	G	A	p.R163*
SKCM	TCGA-YD-A9TA-06	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16093870:16094058:16095022:16095125:16096903:16097073,	16095023	16095125	16095047	16095047	Nonsense_Mutation	C	T	p.Q155*
SKCM	TCGA-YD-A9TA-06	AASS	ENST00000473553.1	chr7	121738802:121738920:121741424:121741492:121741674:121741734,121738503:121738630:121741424:121741492:121741674:121741734,	121741425	121741492	121741444	121741444	Nonsense_Mutation	G	A	p.Q463*
SKCM	TCGA-YD-A9TA-06	MCCC1	ENST00000497830.1,ENST00000265594.4,ENST00000492597.1,ENST00000476176.1	chr3	182743542:182743592:182751778:182751865:182755005:182755143,	182751779	182751865	182751863	182751863	Nonsense_Mutation	G	A	p.Q424*
SKCM	TCGA-YD-A9TA-06	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978006	15978006	Nonsense_Mutation	G	A	p.R29*
SKCM	TCGA-YD-A9TA-06	GRM4	ENST00000374181.4,ENST00000538487.2,ENST00000609973.1	chr6	34029669:34029805:34059659:34059876:34100754:34100798,	34059660	34059876	34059742	34059742	Nonsense_Mutation	C	T	p.W218*
SKCM	TCGA-YD-A9TA-06	ITGA7	ENST00000394230.2,ENST00000257880.7,ENST00000553804.1,ENST00000555728.1,ENST00000347027.6,ENST00000257879.6,ENST00000394229.2,ENST00000452168.2	chr12	56091721:56091810:56092166:56092360:56092493:56092677,	56092167	56092360	56092358	56092358	Nonsense_Mutation	C	T	p.W378*
SKCM	TCGA-YD-A9TA-06	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541549	29541549	Nonsense_Mutation	T	A	p.Y491*
SKCM	TCGA-YD-A9TA-06	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579775	82579775	Nonsense_Mutation	G	A	p.Q3377*
SKCM	TCGA-YD-A9TA-06	CFHR5	ENST00000256785.4,ENST00000367414.5	chr1	196971611:196971794:196973790:196973973:196977616:196978804,	196973791	196973973	196973913	196973913	Nonsense_Mutation	C	T	p.Q509*
SKCM	TCGA-YD-A9TA-06	LDHA	ENST00000542179.1,ENST00000430553.2,ENST00000375710.3,ENST00000537296.1,ENST00000486690.2,ENST00000540430.1,ENST00000538451.1,ENST00000545215.1,ENST00000422447.3,ENST00000379412.5	chr11	18424386:18424560:18425240:18425358:18426995:18427042,	18425241	18425358	18425354	18425354	Nonsense_Mutation	G	T	p.E236*
SKCM	TCGA-WE-AAA3-06	TRANK1	ENST00000429976.2,ENST00000428977.2,ENST00000301807.6	chr3	36880103:36880207:36884112:36884201:36887738:36887895,	36884113	36884201	36884116	36884116	Nonsense_Mutation	C	T	p.W1165*
SKCM	TCGA-WE-AAA3-06	PLK3	ENST00000465443.1,ENST00000372201.4	chr1	45268626:45268825:45268939:45269063:45269271:45269293,	45268940	45269063	45268955	45268955	Nonsense_Mutation	C	T	p.R322*
SKCM	TCGA-WE-AAA3-06	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226027605:226027738:226030066:226030175:226032198:226032324,	226030067	226030175	226030147	226030147	Nonsense_Mutation	C	T	p.R338*
SKCM	TCGA-WE-AAA3-06	SYNPR	ENST00000479198.1,ENST00000478300.1,ENST00000295894.5,ENST00000460711.1,ENST00000493532.1	chr3	63466507:63466632:63542218:63542417:63594800:63594992,	63542219	63542417	63542379	63542379	Nonsense_Mutation	C	T	p.Q124*
SKCM	TCGA-WE-AAA3-06	FRAS1	ENST00000502446.1,ENST00000264895.6,ENST00000325942.6,ENST00000264899.6	chr4	79173545:79173705:79176395:79176529:79186178:79186262,	79176396	79176529	79176425	79176425	Nonsense_Mutation	C	T	p.Q167*
SKCM	TCGA-WE-AAA3-06	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29362337:29362435:29365765:29365938:29379615:29379824,	29365766	29365938	29365824	29365824	Nonsense_Mutation	C	T	p.R508*
SKCM	TCGA-EB-A3Y7-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420145	203420145	Nonsense_Mutation	C	A	p.S586*
SKCM	TCGA-EB-A3Y7-01	FAM81A	ENST00000288228.5	chr15	59752131:59752405:59784469:59784588:59799411:59799541,	59784470	59784588	59784572	59784572	Nonsense_Mutation	C	T	p.R133*
SKCM	TCGA-EB-A3Y7-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329624	33329624	Nonsense_Mutation	A	T	p.L1479*
SKCM	TCGA-EB-A3Y7-01	CCDC144A	ENST00000360495.5,ENST00000360524.8,ENST00000340621.5,ENST00000443444.2,ENST00000399273.1	chr17	16610782:16610856:16612109:16612949:16614992:16615129,	16612110	16612949	16612232	16612232	Nonsense_Mutation	G	A	p.W287*
SKCM	TCGA-EB-A3Y7-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86416204	86416204	Nonsense_Mutation	A	T	p.K366*
SKCM	TCGA-EB-A3Y7-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021428	42021428	Nonsense_Mutation	C	T	p.R1242*
SKCM	TCGA-EB-A3Y7-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086302	109086302	Nonsense_Mutation	C	T	p.Q173*
SKCM	TCGA-EB-A3Y7-01	OSGEPL1	ENST00000519810.1,ENST00000520350.1,ENST00000264151.5,ENST00000522700.1	chr2	190618641:190618790:190618866:190619071:190619898:190620286,	190618867	190619071	190619038	190619038	Nonsense_Mutation	C	A	p.E215*
SKCM	TCGA-EB-A3Y7-01	ARHGEF4	ENST00000525839.1,ENST00000409303.1,ENST00000326016.5,ENST00000392953.3	chr2	131688530:131688830:131704081:131704208:131785517:131785657,	131704082	131704208	131704087	131704087	Nonsense_Mutation	G	A	p.W958*
SKCM	TCGA-D9-A6EA-06	STK3	ENST00000523601.1,ENST00000419617.2	chr8	99591986:99592017:99608259:99608397:99718694:99718862,	99608260	99608397	99608308	99608308	Nonsense_Mutation	A	T	p.C286*
SKCM	TCGA-D9-A6EA-06	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742291	42742291	Nonsense_Mutation	G	A	p.Q704*
SKCM	TCGA-D9-A6EA-06	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19339381	19339381	Nonsense_Mutation	G	A	p.W984*
SKCM	TCGA-D9-A6EA-06	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576865	7576865	Nonsense_Mutation	A	T	p.Y327*
SKCM	TCGA-D9-A6EA-06	ACOXL	ENST00000441974.1	chr2	111753533:111753581:111789203:111789291:111806794:111806865,111753533:111753581:111789203:111789291:111850441:111850543,	111789204	111789291	111789239	111789239	Nonsense_Mutation	G	A	p.W469*
SKCM	TCGA-D9-A6EA-06	ATP13A4	ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000392443.3	chr3	193209117:193209187:193210705:193210786:193210878:193210949,	193210706	193210786	193210749	193210749	Nonsense_Mutation	G	A	p.Q164*
SKCM	TCGA-D9-A6EA-06	DHRS2	ENST00000432832.2,ENST00000250383.6,ENST00000557535.1,ENST00000344777.7,ENST00000553600.1	chr14	24108548:24108565:24109002:24109104:24112360:24112428,	24109003	24109104	24109098	24109098	Nonsense_Mutation	G	A	p.W138*
SKCM	TCGA-D9-A6EA-06	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48583974:48584061:48591336:48591472:48593511:48593579,	48591337	48591472	48591433	48591433	Nonsense_Mutation	G	A	p.W1019*
SKCM	TCGA-D3-A8GO-06	ANKZF1	ENST00000461731.1,ENST00000465550.1,ENST00000410034.3,ENST00000409849.1,ENST00000323348.5,ENST00000467884.1,ENST00000477479.1,ENST00000463792.1,ENST00000496346.1	chr2	220098007:220098155:220098436:220098665:220098854:220099010,	220098437	220098665	220098575	220098575	Nonsense_Mutation	C	T	p.R320*
SKCM	TCGA-D3-A8GO-06	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329343	56329343	Nonsense_Mutation	C	T	p.W66*
SKCM	TCGA-D3-A8GO-06	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2892338	2892338	Nonsense_Mutation	G	A	p.W738*
SKCM	TCGA-D3-A8GO-06	GABRB2	ENST00000393959.1,ENST00000353437.6,ENST00000517901.1,ENST00000520240.1,ENST00000274547.2	chr5	160837980:160838063:160886629:160886850:160972232:160972300,	160886630	160886850	160886815	160886815	Nonsense_Mutation	C	T	p.W91*
SKCM	TCGA-D3-A8GO-06	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91691587:91691800:91694544:91694777:91695740:91695860,	91694545	91694777	91694733	91694733	Nonsense_Mutation	C	T	p.Q2068*
SKCM	TCGA-D3-A8GO-06	SCN2A	ENST00000375427.2,ENST00000357398.3	chr2	166165175:166165304:166165674:166165766:166166832:166167105,	166165675	166165766	166165718	166165718	Nonsense_Mutation	C	T	p.R217*
SKCM	TCGA-D3-A8GO-06	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88665027:88665120:88666198:88666356:88675341:88675459,	88666199	88666356	88666313	88666313	Nonsense_Mutation	C	T	p.R349*
SKCM	TCGA-EB-A430-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	469321:469422:470423:470525:472897:473008,	470424	470525	470430	470430	Nonsense_Mutation	A	C	p.Y239*
SKCM	TCGA-EB-A430-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373722	104373722	Nonsense_Mutation	A	T	p.K94*
SKCM	TCGA-EB-A430-01	SLC22A17	ENST00000397267.1,ENST00000206544.8,ENST00000397260.3,ENST00000354772.3	chr14	23817099:23817205:23817369:23817515:23817714:23817755,	23817370	23817515	23817427	23817427	Nonsense_Mutation	C	A	p.E261*
SKCM	TCGA-EB-A430-01	UGT2B10	ENST00000265403.7,ENST00000458688.2	chr4	69687988:69688120:69692127:69692215:69693046:69693266,	69692128	69692215	69692192	69692192	Nonsense_Mutation	G	A	p.W355*
SKCM	TCGA-EB-A430-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485075	35485075	Nonsense_Mutation	G	A	p.Q103*
SKCM	TCGA-EE-A29W-06	SERPINB3	ENST00000332821.8	chr18	61328033:61328090:61328285:61328476:61329079:61329118,	61328286	61328476	61328390	61328390	Nonsense_Mutation	T	A	p.K21*
SKCM	TCGA-DA-A95X-06	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463209	5463209	Nonsense_Mutation	C	T	p.W269*
SKCM	TCGA-DA-A95X-06	BHMT2	ENST00000255192.3,ENST00000519743.1	chr5	78375224:78375283:78376509:78376701:78378631:78378779,	78376510	78376701	78376674	78376674	Nonsense_Mutation	G	A	p.W141*
SKCM	TCGA-DA-A95X-06	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379288	29379288	Nonsense_Mutation	A	T	p.K412*
SKCM	TCGA-DA-A95X-06	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000505012.1,ENST00000514259.1	chr5	33441151:33441249:33445429:33445510:33448646:33448836,	33445430	33445510	33445502	33445502	Nonsense_Mutation	C	T	p.R44*
SKCM	TCGA-DA-A95X-06	COX7A2L	ENST00000378669.1	chr2	42580351:42580483:42588229:42588988:42596007:42596150,	42588230	42588988	42588271	42588271	Nonsense_Mutation	T	A	p.K11*
SKCM	TCGA-DA-A95X-06	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119065035:119065229:119093522:119093636:119094611:119094747,	119093523	119093636	119093607	119093607	Nonsense_Mutation	C	T	p.Q1078*
SKCM	TCGA-DA-A95X-06	TMLHE	ENST00000334398.3	chrX	154722017:154722156:154736558:154736795:154741333:154741453,	154736559	154736795	154736656	154736656	Nonsense_Mutation	C	A	p.E300*
SKCM	TCGA-EE-A2MD-06	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071057	197071057	Nonsense_Mutation	G	A	p.R2442*
SKCM	TCGA-EE-A2MD-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103798	168103798	Nonsense_Mutation	C	T	p.Q1966*
SKCM	TCGA-EE-A2MD-06	SLC22A9	ENST00000536333.1	chr11	63149630:63149749:63173968:63174183:63175583:63175692,63149630:63149749:63173968:63174183:63177273:63177430,	63173969	63174183	63174092	63174092	Nonsense_Mutation	G	A	p.W399*
SKCM	TCGA-EE-A2MD-06	ARMC8	ENST00000489213.1,ENST00000471709.1,ENST00000393058.3,ENST00000470821.1,ENST00000461822.1,ENST00000469044.1,ENST00000481646.1,ENST00000491704.1,ENST00000471453.1,ENST00000485396.1,ENST00000538260.1,ENST00000463485.1,ENST00000358441.2	chr3	137953875:137953956:137956150:137956226:137958309:137958370,137953875:137953956:137956150:137956226:137956323:137956414,	137956151	137956226	137956154	137956154	Nonsense_Mutation	C	T	p.R205*
SKCM	TCGA-EE-A2MD-06	PALB2	ENST00000261584.4,ENST00000568219.1	chr16	23619184:23619333:23625324:23625412:23632682:23632710,	23625325	23625412	23625360	23625360	Nonsense_Mutation	G	A	p.Q1056*
SKCM	TCGA-EE-A2MD-06	ACBD4	ENST00000376955.4	chr17	43215294:43215355:43216387:43216527:43220809:43221217,43215289:43215355:43216387:43216527:43219949:43220326,	43216388	43216527	43216425	43216425	Nonsense_Mutation	G	A	p.W242*
SKCM	TCGA-EE-A2MD-06	PDLIM5	ENST00000509357.1	chr4	95444981:95445026:95494501:95494544:95506715:95506888,	95494502	95494544	95494539	95494539	Nonsense_Mutation	C	T	p.Q96*
SKCM	TCGA-EE-A2MD-06	TXNDC11	ENST00000283033.5,ENST00000356957.3	chr16	11782158:11782301:11785145:11785938:11791980:11792181,	11785146	11785938	11785896	11785896	Nonsense_Mutation	G	A	p.Q411*
SKCM	TCGA-EE-A2MD-06	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000468939.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58140517:58140655:58141686:58141802:58145280:58145413,	58141687	58141802	58141800	58141800	Nonsense_Mutation	C	T	p.Q2296*
SKCM	TCGA-EE-A2MD-06	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59787207:59787422:59805629:59805741:59811918:59812041,	59805630	59805741	59805663	59805663	Nonsense_Mutation	C	T	p.R79*
SKCM	TCGA-EE-A2MD-06	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828152	121828152	Nonsense_Mutation	G	A	p.W248*
SKCM	TCGA-EE-A2MD-06	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21299951	21299951	Nonsense_Mutation	C	T	p.Q161*
SKCM	TCGA-EE-A2MD-06	KMT2E	ENST00000334914.7,ENST00000257745.4,ENST00000334884.5,ENST00000482560.2,ENST00000476671.1,ENST00000334877.4,ENST00000311117.3,ENST00000478990.1	chr7	104719292:104719410:104722134:104722244:104730455:104730579,	104722135	104722244	104722179	104722179	Nonsense_Mutation	T	A	p.Y431*
SKCM	TCGA-EE-A2MD-06	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635671	33635671	Nonsense_Mutation	G	T	p.E819*
SKCM	TCGA-EE-A2MD-06	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580162	7580162	Nonsense_Mutation	C	T	p.R1247*
SKCM	TCGA-EE-A2MD-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A2MD-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
SKCM	TCGA-EE-A2MD-06	DNAH5	ENST00000265104.4	chr5	13716595:13716799:13717423:13717629:13718990:13719210,	13717424	13717629	13717512	13717512	Nonsense_Mutation	C	T	p.W4206*
SKCM	TCGA-EE-A2MD-06	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000402746.1	chr7	2054140:2054277:2108828:2108973:2188786:2188873,	2108829	2108973	2108855	2108855	Nonsense_Mutation	G	A	p.Q398*
SKCM	TCGA-GN-A4U8-06	TCIRG1	ENST00000525516.1,ENST00000528981.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67814940:67815039:67815113:67815271:67815348:67815439,	67815114	67815271	67815268	67815268	Nonsense_Mutation	G	A	p.W487*
SKCM	TCGA-GN-A4U8-06	TCIRG1	ENST00000533005.1	chr11	67814940:67815039:67815113:67815439:67816345:67816394,	67815114	67815439	67815268	67815268	Nonsense_Mutation	G	A	p.W487*
SKCM	TCGA-GN-A4U8-06	TCIRG1	ENST00000525516.1,ENST00000528981.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67814940:67815039:67815113:67815271:67815348:67815439,	67815114	67815271	67815269	67815269	Nonsense_Mutation	G	A	p.W487*
SKCM	TCGA-GN-A4U8-06	TCIRG1	ENST00000533005.1	chr11	67814940:67815039:67815113:67815439:67816345:67816394,	67815114	67815439	67815269	67815269	Nonsense_Mutation	G	A	p.W487*
SKCM	TCGA-GN-A4U8-06	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28575527	28575527	Nonsense_Mutation	C	T	p.Q651*
SKCM	TCGA-GN-A4U8-06	NEBL	ENST00000377122.4	chr10	21120401:21120512:21124441:21124552:21129667:21129778,	21124442	21124552	21124456	21124456	Nonsense_Mutation	C	A	p.E479*
SKCM	TCGA-GN-A4U8-06	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248397	141248397	Nonsense_Mutation	G	A	p.Q214*
SKCM	TCGA-GN-A4U8-06	ELMSAN1	ENST00000451078.1,ENST00000476562.1,ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74186085:74186204:74187999:74188212:74189400:74189550,	74188000	74188212	74188089	74188089	Nonsense_Mutation	G	A	p.Q950*
SKCM	TCGA-EB-A41B-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373727	36373727	Nonsense_Mutation	C	T	p.W297*
SKCM	TCGA-EB-A41B-01	CLHC1	ENST00000407122.1,ENST00000406076.1,ENST00000401408.1	chr2	55433405:55433512:55436539:55436652:55436765:55436788,55435761:55435846:55436539:55436652:55436765:55436788,	55436540	55436652	55436561	55436561	Nonsense_Mutation	G	A	p.Q265*
SKCM	TCGA-EB-A41B-01	LRTM1	ENST00000493075.1	chr3	54952359:54952919:54958645:54959242:55000954:55001115,	54958646	54959242	54958704	54958704	Nonsense_Mutation	C	T	p.W182*
SKCM	TCGA-EB-A41B-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323751	59323751	Nonsense_Mutation	C	T	p.R244*
SKCM	TCGA-EB-A41B-01	DNAH5	ENST00000265104.4	chr5	13777315:13777464:13780937:13781068:13786287:13786460,	13780938	13781068	13781044	13781044	Nonsense_Mutation	G	A	p.Q2949*
SKCM	TCGA-ER-A19C-06	CHD2	ENST00000557381.1,ENST00000394196.4	chr15	93489267:93489446:93492181:93492306:93496586:93496803,	93492182	93492306	93492257	93492257	Nonsense_Mutation	C	T	p.R485*
SKCM	TCGA-EB-A5UN-06	PBRM1	ENST00000356770.4	chr3	52668617:52668831:52675969:52676061:52677263:52677359,52668617:52668831:52675969:52676061:52678719:52678805,	52675970	52676061	52675975	52675975	Nonsense_Mutation	A	T	p.L329*
SKCM	TCGA-EB-A5UN-06	MYO5C	ENST00000443683.2,ENST00000261839.7,ENST00000560809.1,ENST00000558902.1	chr15	52539113:52539211:52539654:52539789:52540896:52540976,	52539655	52539789	52539765	52539765	Nonsense_Mutation	G	A	p.Q591*
SKCM	TCGA-EB-A5UN-06	MAP2K1	ENST00000307102.5,ENST00000566326.1	chr15	66774092:66774217:66777327:66777529:66779565:66779630,	66777328	66777529	66777374	66777374	Nonsense_Mutation	G	A	p.W247*
SKCM	TCGA-EB-A5UN-06	SLC35F4	ENST00000339762.6,ENST00000554729.1,ENST00000556826.1	chr14	58038611:58038737:58047931:58048151:58055933:58056228,	58047932	58048151	58047965	58047965	Nonsense_Mutation	C	T	p.W258*
SKCM	TCGA-EB-A5UN-06	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9400453:9400556:9401943:9402108:9404394:9404599,	9401944	9402108	9401956	9401956	Nonsense_Mutation	C	T	p.Q711*
SKCM	TCGA-EB-A5UN-06	RAD1	ENST00000513914.1	chr5	34911722:34911917:34913574:34913683:34914799:34914906,34911722:34911917:34913574:34913683:34914031:34914131,	34913575	34913683	34913671	34913671	Nonsense_Mutation	G	A	p.Q71*
SKCM	TCGA-EB-A5UN-06	ANKRD16	ENST00000380094.5,ENST00000380092.4	chr10	5920084:5920250:5922260:5922339:5924968:5925130,	5922261	5922339	5922267	5922267	Nonsense_Mutation	G	A	p.R308*
SKCM	TCGA-EB-A5UN-06	DAPP1	ENST00000512369.1	chr4	100784926:100785012:100787190:100787278:100789273:100789871,	100787191	100787278	100787272	100787272	Nonsense_Mutation	G	A	p.W256*
SKCM	TCGA-EB-A5UN-06	PAIP2	ENST00000265192.4,ENST00000510080.1,ENST00000394795.2	chr5	138699447:138699611:138700252:138700432:138704421:138704487,	138700253	138700432	138700376	138700376	Nonsense_Mutation	C	T	p.Q88*
SKCM	TCGA-EB-A5UN-06	CCDC90B	ENST00000529073.1,ENST00000534753.1,ENST00000526631.1,ENST00000260054.4	chr11	82985681:82985783:82991183:82991303:82996169:82996254,82985682:82985783:82991183:82991303:82996595:82997011,82985681:82985783:82991183:82991303:82996915:82997007,82989768:82989872:82991183:82991303:82996915:82997007,	82991184	82991303	82991202	82991202	Nonsense_Mutation	G	A	p.Q68*
SKCM	TCGA-EE-A3J5-06	TSTD2	ENST00000354801.2,ENST00000341170.4	chr9	100387962:100388279:100389679:100389894:100395524:100395583,	100389680	100389894	100389828	100389828	Nonsense_Mutation	G	T	p.S6*
SKCM	TCGA-EE-A3J5-06	TSTD2	ENST00000375172.2	chr9	100387962:100388279:100389587:100389894:100395524:100395583,	100389588	100389894	100389828	100389828	Nonsense_Mutation	G	T	p.S6*
SKCM	TCGA-EE-A3J5-06	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1,ENST00000508049.1	chr4	56336910:56336973:56342129:56342221:56344981:56345130,	56342130	56342221	56342132	56342132	Nonsense_Mutation	C	A	p.E116*
SKCM	TCGA-EE-A3J5-06	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83932100	83932100	Nonsense_Mutation	C	A	p.E635*
SKCM	TCGA-EE-A3J5-06	ADRA1A	ENST00000380582.3	chr8	26614060:26614296:26627797:26628183:26721603:26722332,	26627798	26628183	26627876	26627876	Nonsense_Mutation	C	T	p.W397*
SKCM	TCGA-EE-A3J5-06	JAKMIP2	ENST00000265272.5,ENST00000507386.1,ENST00000333010.6	chr5	147027938:147028037:147029900:147030110:147040510:147041008,	147029901	147030110	147029951	147029951	Nonsense_Mutation	G	A	p.R263*
SKCM	TCGA-EE-A3J5-06	CWH43	ENST00000514053.2	chr4	48988329:48988489:48990493:48990685:48993470:48993591,	48990494	48990685	48990633	48990633	Nonsense_Mutation	G	A	p.W61*
SKCM	TCGA-EE-A3J5-06	SLC22A1	ENST00000460902.2,ENST00000324965.4,ENST00000457470.2	chr6	160542967:160543378:160551135:160551239:160553263:160553418,	160551136	160551239	160551162	160551162	Nonsense_Mutation	G	A	p.W146*
SKCM	TCGA-EE-A3J5-06	ZNF215	ENST00000527171.1	chr11	6962801:6962884:6964776:6964872:6976920:6977013,	6964777	6964872	6964835	6964835	Nonsense_Mutation	G	A	p.W225*
SKCM	TCGA-EE-A3J5-06	MAOB	ENST00000536181.1,ENST00000538942.1,ENST00000378069.4,ENST00000487544.1	chrX	43661418:43661510:43662546:43662651:43698113:43698251,	43662547	43662651	43662611	43662611	Nonsense_Mutation	C	T	p.W107*
SKCM	TCGA-EE-A3J5-06	ZNF215	ENST00000527171.1	chr11	6962801:6962884:6964776:6964872:6976920:6977013,	6964777	6964872	6964834	6964834	Nonsense_Mutation	G	A	p.W225*
SKCM	TCGA-EE-A3J5-06	NPSR1	ENST00000381544.2	chr7	34818106:34818177:34851381:34851475:34867012:34867214,34724163:34724296:34851381:34851475:34867012:34867214,	34851382	34851475	34851469	34851469	Nonsense_Mutation	C	T	p.Q158*
SKCM	TCGA-EE-A3J5-06	DCDC1	ENST00000597505.1,ENST00000452803.1	chr11	31287053:31287147:31312193:31312399:31327161:31327324,	31312194	31312399	31312208	31312208	Nonsense_Mutation	C	A	p.E316*
SKCM	TCGA-EE-A3J5-06	CABIN1	ENST00000398319.2,ENST00000445422.1,ENST00000263119.5,ENST00000454754.1	chr22	24447286:24447436:24451335:24451622:24452654:24452767,	24451336	24451622	24451496	24451496	Nonsense_Mutation	C	T	p.Q323*
SKCM	TCGA-EE-A3J5-06	SYNE2	ENST00000357395.3,ENST00000555612.1,ENST00000358025.3,ENST00000553289.1,ENST00000394768.2,ENST00000344113.4,ENST00000555002.1	chr14	64628831:64628994:64630119:64630299:64632002:64632128,	64630120	64630299	64630183	64630183	Nonsense_Mutation	C	T	p.R1840*
SKCM	TCGA-EE-A3J5-06	IGF2BP3	ENST00000476938.1,ENST00000468263.1,ENST00000466809.2,ENST00000258729.3	chr7	23401152:23401216:23401308:23401360:23458394:23458443,	23401309	23401360	23401339	23401339	Nonsense_Mutation	G	A	p.Q103*
SKCM	TCGA-EE-A3J5-06	DAPP1	ENST00000512369.1	chr4	100784926:100785012:100787190:100787278:100789273:100789871,	100787191	100787278	100787272	100787272	Nonsense_Mutation	G	A	p.W256*
SKCM	TCGA-EE-A3J5-06	DGCR2	ENST00000263196.7,ENST00000545799.1,ENST00000389262.4	chr22	19055612:19055738:19076880:19077003:19109640:19109920,	19076881	19077003	19076956	19076956	Nonsense_Mutation	G	A	p.Q43*
SKCM	TCGA-EE-A3J5-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749452	196749452	Nonsense_Mutation	G	A	p.R1874*
SKCM	TCGA-EE-A3J5-06	KLHL20	ENST00000209884.4	chr1	173685141:173685205:173702851:173703425:173720902:173721061,	173702852	173703425	173702865	173702865	Nonsense_Mutation	C	T	p.R13*
SKCM	TCGA-EE-A3J5-06	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000272427.6	chr2	72742171:72742255:72786581:72786650:72802620:72802797,	72786582	72786650	72786608	72786608	Nonsense_Mutation	G	A	p.R297*
SKCM	TCGA-EE-A3J5-06	FBLN5	ENST00000556154.1,ENST00000342058.4	chr14	92361351:92361416:92403290:92403545:92406908:92406960,	92403291	92403545	92403441	92403441	Nonsense_Mutation	G	A	p.R118*
SKCM	TCGA-EE-A3J5-06	SLC39A11	ENST00000255559.3	chr17	70732788:70732858:70845772:70845943:70943869:70944014,70732788:70732858:70845772:70845943:70943890:70944014,	70845773	70845943	70845917	70845917	Nonsense_Mutation	G	A	p.Q160*
SKCM	TCGA-EE-A3J5-06	AMBRA1	ENST00000526545.1	chr11	46418999:46419493:46430062:46430256:46431825:46431918,46418999:46419493:46430062:46430256:46439462:46439545,	46430063	46430256	46430162	46430162	Nonsense_Mutation	G	A	p.Q1102*
SKCM	TCGA-EE-A3J5-06	TTYH1	ENST00000376530.3,ENST00000492920.1,ENST00000476863.1,ENST00000487134.1	chr19	54946806:54946864:54947007:54947053:54947267:54947338,54946806:54946864:54947007:54947053:54947270:54947351,	54947008	54947053	54947051	54947051	Nonsense_Mutation	C	T	p.Q438*
SKCM	TCGA-EE-A3J5-06	PHF12	ENST00000577226.1,ENST00000332830.4,ENST00000578900.2,ENST00000378879.3,ENST00000268756.3	chr17	27248812:27248826:27250926:27251320:27254008:27254081,	27250927	27251320	27250966	27250966	Nonsense_Mutation	G	A	p.Q226*
SKCM	TCGA-EE-A3J5-06	PHF12	ENST00000582436.1	chr17	27248812:27248826:27250926:27254081:27277082:27277264,	27250927	27254081	27250966	27250966	Nonsense_Mutation	G	A	p.Q226*
SKCM	TCGA-QB-A6FS-06	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87049313:87049391:87051436:87051541:87053221:87053368,	87051437	87051541	87051439	87051439	Nonsense_Mutation	G	A	p.Q772*
SKCM	TCGA-QB-A6FS-06	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789*
SKCM	TCGA-QB-A6FS-06	PARD3	ENST00000374789.3,ENST00000545693.1,ENST00000545260.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34420390:34420511:34558584:34558827:34606034:34606260,34420390:34420511:34558584:34558827:34573062:34573173,	34558585	34558827	34558811	34558811	Nonsense_Mutation	G	A	p.R1068*
SKCM	TCGA-QB-A6FS-06	RAB11FIP4	ENST00000394744.2	chr17	29815135:29815290:29844668:29844895:29848183:29848202,	29844669	29844895	29844720	29844720	Nonsense_Mutation	G	T	p.E130*
SKCM	TCGA-QB-A6FS-06	SLC28A1	ENST00000537624.1,ENST00000286749.3,ENST00000394573.1	chr15	85478256:85478425:85478551:85478749:85486675:85486757,	85478552	85478749	85478742	85478742	Nonsense_Mutation	G	A	p.W525*
SKCM	TCGA-QB-A6FS-06	EPHB6	ENST00000411471.2,ENST00000422643.1,ENST00000425995.1,ENST00000442129.1,ENST00000392957.2	chr7	142563229:142563385:142563714:142564071:142564235:142564360,	142563715	142564071	142563804	142563804	Nonsense_Mutation	C	T	p.R398*
SKCM	TCGA-QB-A6FS-06	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135772809:135772997:135776101:135776224:135776975:135777086,	135776102	135776224	135776203	135776203	Nonsense_Mutation	G	A	p.Q842*
SKCM	TCGA-QB-A6FS-06	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040381	103040381	Nonsense_Mutation	C	T	p.R61*
SKCM	TCGA-QB-A6FS-06	PSMC6	ENST00000445930.2,ENST00000606149.1	chr14	53184798:53184860:53184946:53185070:53190682:53190754,53184798:53184860:53184946:53185070:53185694:53185756,	53184947	53185070	53185031	53185031	Nonsense_Mutation	C	T	p.Q240*
SKCM	TCGA-QB-A6FS-06	PI4KB	ENST00000368874.4,ENST00000489223.2,ENST00000368872.1	chr1	151278739:151278839:151280049:151280277:151288048:151288148,	151280050	151280277	151280271	151280271	Nonsense_Mutation	G	A	p.R333*
SKCM	TCGA-QB-A6FS-06	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516761	195516761	Nonsense_Mutation	G	A	p.Q564*
SKCM	TCGA-QB-A6FS-06	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3	chr9	119858322:119858430:119903604:119903757:119976636:119976832,	119903605	119903757	119903608	119903608	Nonsense_Mutation	G	A	p.R389*
SKCM	TCGA-QB-A6FS-06	SPATA5L1	ENST00000559860.1,ENST00000305560.6,ENST00000531970.1	chr15	45702570:45702728:45706768:45706978:45707784:45707977,	45706769	45706978	45706829	45706829	Nonsense_Mutation	A	T	p.K499*
SKCM	TCGA-QB-A6FS-06	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25972564:25973282:25976402:25976508:25978886:25978983,	25976403	25976508	25976476	25976476	Nonsense_Mutation	G	A	p.R357*
SKCM	TCGA-QB-A6FS-06	ASPH	ENST00000379454.4,ENST00000445642.3,ENST00000524173.1,ENST00000518068.1,ENST00000522835.1,ENST00000518306.1,ENST00000522919.1,ENST00000356457.5,ENST00000523927.1,ENST00000517847.2,ENST00000541428.1	chr8	62550527:62550562:62550880:62550922:62555446:62555479,	62550881	62550922	62550915	62550915	Nonsense_Mutation	A	T	p.Y237*
SKCM	TCGA-QB-A6FS-06	ASPH	ENST00000523897.1,ENST00000519234.1,ENST00000517903.1	chr8	62550527:62550562:62550880:62550919:62555446:62555479,	62550881	62550919	62550915	62550915	Nonsense_Mutation	A	T	p.Y237*
SKCM	TCGA-QB-A6FS-06	EFCAB2	ENST00000473686.1,ENST00000391837.3,ENST00000425550.1,ENST00000487845.1,ENST00000551317.1,ENST00000366521.3,ENST00000495271.1,ENST00000366522.2,ENST00000447569.2,ENST00000497591.1,ENST00000549220.1,ENST00000366523.1	chr1	245245384:245245464:245246743:245246786:245246923:245246990,	245246744	245246786	245246775	245246775	Nonsense_Mutation	C	T	p.R235*
SKCM	TCGA-EE-A29R-06	CCDC181	ENST00000545005.1,ENST00000491570.1,ENST00000367805.3,ENST00000367806.3	chr1	169388250:169388397:169390600:169391551:169394048:169394168,	169390601	169391551	169390657	169390657	Nonsense_Mutation	G	A	p.R338*
SKCM	TCGA-EE-A29R-06	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135968	144135968	Nonsense_Mutation	A	T	p.K947*
SKCM	TCGA-EE-A29R-06	PICK1	ENST00000356976.3,ENST00000432756.2,ENST00000424694.1,ENST00000484021.1,ENST00000468288.1,ENST00000472724.1,ENST00000435166.1,ENST00000404072.3	chr22	38461119:38461137:38463710:38463777:38465039:38465092,	38463711	38463777	38463714	38463714	Nonsense_Mutation	G	T	p.E96*
SKCM	TCGA-EE-A29R-06	SNRK	ENST00000429705.2,ENST00000437827.1,ENST00000454177.1,ENST00000296088.7	chr3	43373660:43373802:43381778:43381991:43384835:43384970,	43381779	43381991	43381975	43381975	Nonsense_Mutation	C	T	p.R310*
SKCM	TCGA-EE-A29R-06	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000577880.1	chr18	2739429:2739518:2740700:2740819:2743758:2743926,	2740701	2740819	2740736	2740736	Nonsense_Mutation	C	T	p.Q1184*
SKCM	TCGA-EE-A29R-06	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123271011:123271229:123274058:123274310:123274968:123275172,	123274059	123274310	123274079	123274079	Nonsense_Mutation	C	T	p.R4624*
SKCM	TCGA-EE-A29R-06	CCAR1	ENST00000536012.1,ENST00000479143.2,ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543706.1,ENST00000543225.1	chr10	70517106:70517134:70520763:70520949:70525644:70525684,	70520764	70520949	70520836	70520836	Nonsense_Mutation	C	T	p.R665*
SKCM	TCGA-EE-A29R-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36896895	36896895	Nonsense_Mutation	G	A	p.Q1396*
SKCM	TCGA-EE-A29R-06	NPR1	ENST00000368680.3	chr1	153662759:153662858:153665581:153665673:153665827:153666468,	153665582	153665673	153665653	153665653	Nonsense_Mutation	C	T	p.R1035*
SKCM	TCGA-EE-A29R-06	ST18	ENST00000521824.1,ENST00000276480.7,ENST00000522251.1,ENST00000521582.1	chr8	53055489:53055605:53062291:53062537:53071457:53071669,	53062292	53062537	53062480	53062480	Nonsense_Mutation	G	A	p.R622*
SKCM	TCGA-FR-A8YC-06	SIGLEC9	ENST00000440804.3	chr19	51628164:51628652:51628853:51629132:51629337:51629385,	51628854	51629132	51629045	51629045	Nonsense_Mutation	C	T	p.Q205*
SKCM	TCGA-FR-A8YC-06	RBBP8	ENST00000399722.2,ENST00000327155.5,ENST00000583057.1,ENST00000581687.1,ENST00000360790.5	chr18	20596799:20596887:20602091:20602233:20606105:20606333,	20602092	20602233	20602226	20602226	Nonsense_Mutation	G	A	p.W831*
SKCM	TCGA-FR-A8YC-06	EXD2	ENST00000409018.3,ENST00000449989.1,ENST00000312994.5,ENST00000409675.1,ENST00000409014.1,ENST00000409949.1,ENST00000409242.1	chr14	69697188:69697315:69701416:69701748:69702762:69702869,	69701417	69701748	69701576	69701576	Nonsense_Mutation	C	T	p.R168*
SKCM	TCGA-FR-A8YC-06	EXD2	ENST00000492815.1	chr14	69697188:69697315:69701490:69701748:69702762:69702869,	69701491	69701748	69701576	69701576	Nonsense_Mutation	C	T	p.R168*
SKCM	TCGA-FR-A8YC-06	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527558	29527558	Nonsense_Mutation	G	A	p.W336*
SKCM	TCGA-FR-A8YC-06	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580449	7580449	Nonsense_Mutation	G	A	p.W1342*
SKCM	TCGA-FR-A8YC-06	CRLF3	ENST00000578692.1,ENST00000544695.1,ENST00000324238.6	chr17	29119457:29119590:29120467:29120690:29123177:29123355,	29120468	29120690	29120522	29120522	Nonsense_Mutation	C	A	p.E258*
SKCM	TCGA-FR-A8YC-06	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171884854:171884915:171902683:171902872:171906323:171906460,	171902684	171902872	171902844	171902844	Nonsense_Mutation	C	A	p.E289*
SKCM	TCGA-FR-A8YC-06	ZFYVE27	ENST00000359980.3,ENST00000370610.3,ENST00000357540.4,ENST00000393677.4,ENST00000356257.4,ENST00000337540.7,ENST00000423811.1,ENST00000453958.2	chr10	99498300:99498431:99509230:99509343:99510087:99510227,99508025:99508121:99509230:99509343:99510087:99510227,	99509231	99509343	99509340	99509340	Nonsense_Mutation	C	T	p.R221*
SKCM	TCGA-FR-A8YC-06	ITGA8	ENST00000378076.3	chr10	15561288:15561411:15573048:15573150:15590453:15590567,	15573049	15573150	15573081	15573081	Nonsense_Mutation	G	A	p.Q984*
SKCM	TCGA-FR-A8YC-06	TTC9C	ENST00000316461.4,ENST00000532583.1	chr11	62496294:62496558:62502853:62503036:62505759:62505962,	62502854	62503036	62502871	62502871	Nonsense_Mutation	G	T	p.E86*
SKCM	TCGA-FR-A8YC-06	KMT2C	ENST00000418673.1,ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151921519:151921701:151927007:151927112:151927304:151927406,	151927008	151927112	151927049	151927049	Nonsense_Mutation	G	A	p.Q979*
SKCM	TCGA-FR-A8YC-06	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10096596:10096748:10097995:10098161:10102471:10102636,	10097996	10098161	10098002	10098002	Nonsense_Mutation	G	A	p.W813*
SKCM	TCGA-FR-A8YC-06	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635239	33635239	Nonsense_Mutation	C	T	p.Q675*
SKCM	TCGA-FR-A8YC-06	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114353	57114353	Nonsense_Mutation	G	A	p.Q321*
SKCM	TCGA-FR-A8YC-06	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114353	57114353	Nonsense_Mutation	G	A	p.Q321*
SKCM	TCGA-FR-A8YC-06	GRID2	ENST00000282020.4,ENST00000505687.1	chr4	93511281:93511437:94006145:94006430:94031898:94032104,	94006146	94006430	94006163	94006163	Nonsense_Mutation	C	T	p.Q88*
SKCM	TCGA-FR-A8YC-06	ZNF560	ENST00000301480.4	chr19	9583854:9583935:9584874:9585001:9585959:9586045,	9584875	9585001	9584951	9584951	Nonsense_Mutation	C	T	p.W27*
SKCM	TCGA-FR-A8YC-06	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110086387	110086387	Nonsense_Mutation	G	A	p.W248*
SKCM	TCGA-FR-A8YC-06	UBASH3A	ENST00000319294.6	chr21	43833132:43833331:43833518:43833632:43836550:43836720,	43833519	43833632	43833541	43833541	Nonsense_Mutation	G	A	p.W192*
SKCM	TCGA-FR-A8YC-06	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143095974	143095974	Nonsense_Mutation	C	T	p.W352*
SKCM	TCGA-FR-A8YC-06	ZDHHC2	ENST00000262096.8	chr8	17063163:17063284:17065468:17065601:17067440:17067567,	17065469	17065601	17065564	17065564	Nonsense_Mutation	T	A	p.Y231*
SKCM	TCGA-FR-A8YC-06	ITGA5	ENST00000293379.4	chr12	54803015:54803136:54803268:54803381:54805617:54805748,	54803269	54803381	54803292	54803292	Nonsense_Mutation	G	A	p.R147*
SKCM	TCGA-FR-A8YC-06	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157929346:157929387:157930985:157931207:157959622:157959983,	157930986	157931207	157931073	157931073	Nonsense_Mutation	G	A	p.R349*
SKCM	TCGA-FR-A8YC-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-FR-A8YC-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-FR-A8YC-06	ASMTL	ENST00000381333.4,ENST00000381317.3,ENST00000534940.1,ENST00000416733.2	chrX	1536865:1537009:1537874:1538007:1540550:1540735,	1537875	1538007	1537995	1537995	Nonsense_Mutation	G	A	p.Q362*
SKCM	TCGA-FR-A8YC-06	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145640307:145640461:145641072:145641369:145643053:145643082,	145641073	145641369	145641172	145641172	Nonsense_Mutation	C	T	p.R665*
SKCM	TCGA-FR-A8YC-06	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527559	29527559	Nonsense_Mutation	G	A	p.W336*
SKCM	TCGA-FR-A8YC-06	PARP4	ENST00000381989.3	chr13	25015983:25016106:25016727:25016823:25017787:25017868,	25016728	25016823	25016790	25016790	Nonsense_Mutation	T	A	p.K1161*
SKCM	TCGA-FR-A8YC-06	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745518	135745518	Nonsense_Mutation	C	T	p.W308*
SKCM	TCGA-FR-A8YC-06	KDR	ENST00000263923.4	chr4	55968528:55968675:55970809:55971151:55971998:55972107,	55970810	55971151	55971088	55971088	Nonsense_Mutation	C	T	p.W570*
SKCM	TCGA-FR-A8YC-06	ADAM18	ENST00000379866.1,ENST00000265707.5	chr8	39502856:39502993:39505862:39506046:39521313:39521409,	39505863	39506046	39505984	39505984	Nonsense_Mutation	C	T	p.Q390*
SKCM	TCGA-FR-A8YC-06	PCDH15	ENST00000463095.1,ENST00000320301.6,ENST00000448885.1,ENST00000437009.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55616934:55617023:55626401:55626617:55663002:55663130,	55626402	55626617	55626458	55626458	Nonsense_Mutation	G	A	p.Q1228*
SKCM	TCGA-FR-A8YC-06	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471361	56471361	Nonsense_Mutation	G	A	p.Q2656*
SKCM	TCGA-DA-A95V-06	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49067049:49067146:49067424:49067552:49067781:49067941,	49067425	49067552	49067448	49067448	Nonsense_Mutation	C	T	p.W1466*
SKCM	TCGA-DA-A95V-06	UGGT2	ENST00000376747.3	chr13	96547433:96547558:96553060:96553192:96555107:96555314,	96553061	96553192	96553135	96553135	Nonsense_Mutation	G	A	p.R854*
SKCM	TCGA-EB-A24D-01	SLCO2B1	ENST00000428359.2,ENST00000527180.1,ENST00000289575.5	chr11	74862257:74862442:74876831:74876994:74883423:74883614,74862257:74862442:74876831:74876994:74880217:74880286,74875007:74875145:74876831:74876994:74880217:74880286,	74876832	74876994	74876892	74876892	Nonsense_Mutation	C	T	p.R116*
SKCM	TCGA-EB-A24D-01	SCARA5	ENST00000380385.2,ENST00000354914.3	chr8	27727752:27729587:27737085:27737283:27762294:27762351,	27737086	27737283	27737098	27737098	Nonsense_Mutation	G	A	p.R447*
SKCM	TCGA-EB-A24D-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702643	52702643	Nonsense_Mutation	A	C	p.Y85*
SKCM	TCGA-D3-A2JK-06	DHX35	ENST00000373325.2,ENST00000484417.1,ENST00000252011.3,ENST00000373323.4	chr20	37631414:37631511:37632391:37632550:37634788:37634999,	37632392	37632550	37632434	37632434	Nonsense_Mutation	C	T	p.R299*
SKCM	TCGA-DA-A3F5-06	KIAA1324	ENST00000457623.2	chr1	109715109:109715190:109716095:109716201:109727666:109727755,	109716096	109716201	109716108	109716108	Nonsense_Mutation	C	T	p.R237*
SKCM	TCGA-DA-A3F5-06	KIAA1324	ENST00000529753.1	chr1	109715115:109715190:109716095:109716179:109730798:109730976,	109716096	109716179	109716108	109716108	Nonsense_Mutation	C	T	p.R237*
SKCM	TCGA-DA-A3F5-06	CHD2	ENST00000557381.1,ENST00000394196.4	chr15	93489267:93489446:93492181:93492306:93496586:93496803,	93492182	93492306	93492257	93492257	Nonsense_Mutation	C	T	p.R485*
SKCM	TCGA-DA-A3F5-06	UXS1	ENST00000497604.1,ENST00000409032.1,ENST00000283148.7,ENST00000409501.3,ENST00000540130.1	chr2	106710059:106710613:106713173:106713277:106715171:106715229,	106713174	106713277	106713260	106713260	Nonsense_Mutation	G	A	p.Q354*
SKCM	TCGA-DA-A3F5-06	ATP8B4	ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1	chr15	50215575:50215691:50223315:50223504:50226213:50226379,	50223316	50223504	50223484	50223484	Nonsense_Mutation	G	A	p.Q492*
SKCM	TCGA-DA-A3F5-06	ENTPD8	ENST00000371506.2,ENST00000472938.1,ENST00000344119.2	chr9	140331158:140331203:140331320:140331480:140331610:140331761,	140331321	140331480	140331357	140331357	Nonsense_Mutation	C	T	p.W173*
SKCM	TCGA-DA-A3F5-06	ENTPD8	ENST00000493135.1	chr9	140331158:140331203:140331320:140331442:140331610:140331761,	140331321	140331442	140331357	140331357	Nonsense_Mutation	C	T	p.W173*
SKCM	TCGA-D3-A2JC-06	CHRDL1	ENST00000444321.2,ENST00000482160.1,ENST00000372042.1	chrX	109924709:109924877:109931821:109932031:109937390:109937559,	109931822	109932031	109931894	109931894	Nonsense_Mutation	G	A	p.R305*
SKCM	TCGA-W3-AA1O-06	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505078.1,ENST00000312216.8	chr5	94114814:94114868:94134717:94134837:94204037:94204157,	94134718	94134837	94134766	94134766	Nonsense_Mutation	C	T	p.W836*
SKCM	TCGA-W3-AA1O-06	MAMDC2	ENST00000377182.4	chr9	72746434:72746528:72755060:72755204:72758469:72758735,	72755061	72755204	72755145	72755145	Nonsense_Mutation	G	A	p.W360*
SKCM	TCGA-W3-AA1O-06	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000409769.2,ENST00000496205.1,ENST00000461981.1,ENST00000473565.1,ENST00000409403.2	chr2	201718054:201718172:201718625:201718716:201719338:201719418,	201718626	201718716	201718691	201718691	Nonsense_Mutation	G	A	p.R458*
SKCM	TCGA-W3-AA1O-06	APOBEC3H	ENST00000348946.4	chr22	39497241:39497509:39497922:39498047:39498516:39498610,39497241:39497509:39497922:39498047:39499693:39500003,39497241:39497509:39497922:39498047:39499696:39500072,	39497923	39498047	39497939	39497939	Nonsense_Mutation	G	A	p.W145*
SKCM	TCGA-W3-AA1O-06	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11000635	11000635	Nonsense_Mutation	G	A	p.W429*
SKCM	TCGA-W3-AA1O-06	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11000635	11000635	Nonsense_Mutation	G	A	p.W429*
SKCM	TCGA-EE-A181-06	BUB1B	ENST00000287598.6,ENST00000412359.3	chr15	40462737:40462882:40468677:40468874:40475914:40476084,	40468678	40468874	40468867	40468867	Nonsense_Mutation	C	T	p.Q192*
SKCM	TCGA-EE-A181-06	A2M	ENST00000318602.7	chr12	9229941:9230016:9230296:9230453:9231839:9231927,	9230297	9230453	9230416	9230416	Nonsense_Mutation	G	A	p.R1053*
SKCM	TCGA-EE-A181-06	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17134120:17134213:17135907:17136012:17139037:17139218,	17135908	17136012	17135970	17135970	Nonsense_Mutation	G	A	p.Q1087*
SKCM	TCGA-EE-A181-06	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47034417:47034491:47035898:47035985:47038501:47038562,	47035899	47035985	47035920	47035920	Nonsense_Mutation	C	T	p.Q200*
SKCM	TCGA-EE-A181-06	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6754925	6754925	Nonsense_Mutation	G	A	p.Q300*
SKCM	TCGA-EE-A181-06	SH2D3A	ENST00000597687.1	chr19	6754710:6754742:6754841:6754943:6759604:6759681,	6754842	6754943	6754925	6754925	Nonsense_Mutation	G	A	p.Q300*
SKCM	TCGA-EE-A181-06	ITIH2	ENST00000429820.1,ENST00000473227.1,ENST00000358415.4	chr10	7749163:7749196:7750984:7751154:7755143:7755226,	7750985	7751154	7750997	7750997	Nonsense_Mutation	C	T	p.Q69*
SKCM	TCGA-EE-A181-06	FOXK2	ENST00000473637.2,ENST00000526383.2,ENST00000335255.5	chr17	80529599:80529746:80540616:80540810:80541888:80541906,	80540617	80540810	80540674	80540674	Nonsense_Mutation	C	T	p.Q323*
SKCM	TCGA-EE-A181-06	KLHL13	ENST00000541812.1,ENST00000371876.1,ENST00000469946.1,ENST00000447671.2,ENST00000545703.1,ENST00000539496.1,ENST00000371878.1,ENST00000540167.1,ENST00000371882.1,ENST00000262820.3	chrX	117053483:117053680:117054200:117054333:117079396:117079538,	117054201	117054333	117054318	117054318	Nonsense_Mutation	G	A	p.R35*
SKCM	TCGA-EE-A181-06	OCRL	ENST00000357121.5,ENST00000371113.4	chrX	128722862:128722990:128723821:128723933:128724122:128724610,	128723822	128723933	128723831	128723831	Nonsense_Mutation	C	T	p.Q827*
SKCM	TCGA-EE-A181-06	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82580168	82580168	Nonsense_Mutation	G	A	p.R3246*
SKCM	TCGA-EE-A181-06	ASS1	ENST00000372394.1,ENST00000372393.3,ENST00000352480.5,ENST00000372386.5	chr9	133364719:133364851:133370253:133370410:133374891:133374957,	133370254	133370410	133370261	133370261	Nonsense_Mutation	G	A	p.W326*
SKCM	TCGA-EE-A181-06	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142084151:142084208:142089326:142089462:142090080:142090170,	142089327	142089462	142089449	142089449	Nonsense_Mutation	G	A	p.Q1028*
SKCM	TCGA-EE-A181-06	GRAMD1C	ENST00000440446.2,ENST00000472026.1,ENST00000452134.2,ENST00000358160.4,ENST00000479212.1	chr3	113656932:113656990:113658732:113658843:113659086:113659192,	113658733	113658843	113658824	113658824	Nonsense_Mutation	C	T	p.Q595*
SKCM	TCGA-EE-A181-06	TSC1	ENST00000403810.1,ENST00000493467.1,ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135787668:135787844:135796749:135796823:135797205:135797360,	135796750	135796823	135796754	135796754	Nonsense_Mutation	G	A	p.R245*
SKCM	TCGA-EE-A181-06	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000569991.1,ENST00000394747.1,ENST00000567385.1,ENST00000394748.1	chr16	48258258:48258340:48261716:48261875:48264347:48264484,	48261717	48261875	48261816	48261816	Nonsense_Mutation	C	T	p.W99*
SKCM	TCGA-EE-A181-06	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000480988.1,ENST00000369666.1,ENST00000497457.1,ENST00000369664.1,ENST00000543570.1,ENST00000369668.2,ENST00000343210.7,ENST00000479436.1,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000360743.4,ENST00000361846.3,ENST00000418497.1	chr1	113134146:113134225:113140592:113140708:113143415:113143470,	113140593	113140708	113140610	113140610	Nonsense_Mutation	A	T	p.L202*
SKCM	TCGA-EE-A181-06	ERBB3	ENST00000415288.2,ENST00000551085.1,ENST00000267101.3,ENST00000550070.2	chr12	56487882:56487973:56488185:56488340:56489040:56489094,	56488186	56488340	56488219	56488219	Nonsense_Mutation	C	T	p.R580*
SKCM	TCGA-EE-A181-06	EMILIN2	ENST00000254528.3	chr18	2847806:2847929:2884961:2885137:2890558:2892484,	2884962	2885137	2885025	2885025	Nonsense_Mutation	G	A	p.W107*
SKCM	TCGA-EE-A181-06	MCTP2	ENST00000456504.1,ENST00000357742.4	chr15	94945128:94945248:94983404:94983527:94986147:94986189,	94983405	94983527	94983425	94983425	Nonsense_Mutation	G	A	p.W702*
SKCM	TCGA-EE-A181-06	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040388	103040388	Nonsense_Mutation	C	G	p.S63*
SKCM	TCGA-EE-A181-06	LIN7A	ENST00000549417.1,ENST00000261203.3	chr12	81242029:81242101:81283029:81283148:81331419:81331483,	81283030	81283148	81283035	81283035	Nonsense_Mutation	G	A	p.R66*
SKCM	TCGA-EE-A181-06	GSDMC	ENST00000276708.4	chr8	130788347:130788531:130789613:130789837:130798256:130799134,	130789614	130789837	130789707	130789707	Nonsense_Mutation	T	A	p.K43*
SKCM	TCGA-EB-A4P0-01	CEP70	ENST00000464035.1,ENST00000481834.1,ENST00000470159.1,ENST00000264982.3,ENST00000468900.1,ENST00000462419.1,ENST00000542237.1,ENST00000478673.1,ENST00000474781.1,ENST00000484888.1	chr3	138289276:138289340:138289875:138289999:138290107:138290195,	138289876	138289999	138289886	138289886	Nonsense_Mutation	G	A	p.Q92*
SKCM	TCGA-D3-A1Q7-06	TRPM1	ENST00000560658.1,ENST00000559177.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31360081:31360295:31362233:31362429:31369107:31369187,	31362234	31362429	31362263	31362263	Nonsense_Mutation	G	A	p.Q101*
SKCM	TCGA-DA-A1I7-06	GCFC2	ENST00000409857.3	chr2	75928315:75928413:75929438:75929549:75933648:75933770,	75929439	75929549	75929487	75929487	Nonsense_Mutation	G	A	p.Q153*
SKCM	TCGA-DA-A1I7-06	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1	chr2	75928315:75928413:75929324:75929549:75933648:75933770,	75929325	75929549	75929487	75929487	Nonsense_Mutation	G	A	p.Q153*
SKCM	TCGA-DA-A1I7-06	ARMC3	ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23248330:23248503:23250812:23251007:23257234:23257271,	23250813	23251007	23250819	23250819	Nonsense_Mutation	C	T	p.Q182*
SKCM	TCGA-DA-A1I7-06	LILRB5	ENST00000450632.1	chr19	54759148:54759445:54759905:54760178:54760351:54760520,	54759906	54760178	54759989	54759989	Nonsense_Mutation	C	T	p.W182*
SKCM	TCGA-DA-A1I7-06	LILRB5	ENST00000316219.5,ENST00000449561.2,ENST00000466581.1	chr19	54759148:54759445:54759905:54760205:54760351:54760520,	54759906	54760205	54759989	54759989	Nonsense_Mutation	C	T	p.W182*
SKCM	TCGA-DA-A1I7-06	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54919307:54919353:54919515:54919613:54921985:54922051,	54919516	54919613	54919610	54919610	Nonsense_Mutation	C	T	p.Q685*
SKCM	TCGA-DA-A1I7-06	TREH	ENST00000264029.4,ENST00000531295.1,ENST00000529101.1	chr11	118532101:118532218:118532345:118532438:118532598:118532647,	118532346	118532438	118532427	118532427	Nonsense_Mutation	C	T	p.W179*
SKCM	TCGA-DA-A1I7-06	TIMMDC1	ENST00000463927.2	chr3	119217427:119217774:119219541:119219707:119222378:119222467,119217429:119217789:119219541:119219707:119236051:119236162,	119219542	119219707	119219648	119219648	Nonsense_Mutation	A	T	p.K101*
SKCM	TCGA-DA-A1I7-06	FGD4	ENST00000534526.2,ENST00000381025.3,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32754211:32754357:32755094:32755251:32760890:32761029,	32755095	32755251	32755164	32755164	Nonsense_Mutation	T	A	p.Y302*
SKCM	TCGA-BF-AAOU-01	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645158	46645158	Nonsense_Mutation	G	A	p.R568*
SKCM	TCGA-BF-AAOU-01	CD72	ENST00000490239.1,ENST00000259633.4,ENST00000396757.1	chr9	35609981:35610297:35610598:35610750:35611800:35611916,	35610599	35610750	35610733	35610733	Nonsense_Mutation	G	C	p.S323*
SKCM	TCGA-BF-AAOU-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156014	145156014	Nonsense_Mutation	G	A	p.Q914*
SKCM	TCGA-BF-AAOU-01	CCHCR1	ENST00000451521.2,ENST00000376266.5,ENST00000396268.3,ENST00000509552.1	chr6	31113224:31113270:31113472:31113585:31116181:31116288,	31113473	31113585	31113512	31113512	Nonsense_Mutation	G	A	p.R552*
SKCM	TCGA-BF-AAOU-01	ADAD2	ENST00000315906.5,ENST00000564430.1,ENST00000268624.3	chr16	84229135:84229303:84229420:84229650:84229732:84229976,	84229421	84229650	84229576	84229576	Nonsense_Mutation	G	A	p.W485*
SKCM	TCGA-FS-A1ZF-06	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000430577.2,ENST00000436828.1,ENST00000395851.1,ENST00000585296.1,ENST00000268712.3	chr17	16075176:16075309:16089867:16090001:16097775:16097925,	16089868	16090001	16089914	16089914	Nonsense_Mutation	G	A	p.R66*
SKCM	TCGA-FS-A1ZF-06	WNT7A	ENST00000285018.4	chr3	13857754:13860920:13896028:13896300:13916443:13916610,	13896029	13896300	13896034	13896034	Nonsense_Mutation	G	A	p.R189*
SKCM	TCGA-FS-A1ZF-06	NUCKS1	ENST00000367142.4	chr1	205693053:205693109:205696827:205696933:205698699:205698749,	205696828	205696933	205696889	205696889	Nonsense_Mutation	G	A	p.R38*
SKCM	TCGA-ER-A19H-06	CD1C	ENST00000368170.3	chr1	158262570:158262664:158263001:158263092:158263244:158263407,	158263002	158263092	158263023	158263023	Nonsense_Mutation	G	A	p.W304*
SKCM	TCGA-ER-A19H-06	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462137	5462137	Nonsense_Mutation	G	A	p.Q627*
SKCM	TCGA-ER-A19H-06	RPL11	ENST00000482370.1,ENST00000374550.3	chr1	24021149:24021281:24022287:24022398:24022833:24022908,	24022288	24022398	24022390	24022390	Nonsense_Mutation	C	T	p.Q167*
SKCM	TCGA-ER-A199-06	HDHD2	ENST00000588183.1,ENST00000591480.1,ENST00000300605.6,ENST00000590815.1	chr18	44641686:44641719:44656614:44656699:44660866:44661075,	44656615	44656699	44656625	44656625	Nonsense_Mutation	G	A	p.Q129*
SKCM	TCGA-ER-A199-06	SIPA1L3	ENST00000601054.1	chr19	38655410:38655546:38673158:38673380:38682784:38682950,38664265:38664312:38673158:38673380:38682784:38682950,	38673159	38673380	38673292	38673292	Nonsense_Mutation	A	T	p.K1448*
SKCM	TCGA-DA-A1I5-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
SKCM	TCGA-DA-A1I5-06	SLC6A13	ENST00000343164.4,ENST00000445055.2	chr12	336730:336834:344255:344390:346323:346407,	344256	344390	344336	344336	Nonsense_Mutation	G	A	p.R251*
SKCM	TCGA-GN-A262-06	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220161931:220162165:220170324:220170684:220174479:220174597,	220170325	220170684	220170519	220170519	Nonsense_Mutation	G	A	p.Q783*
SKCM	TCGA-GN-A262-06	CPA6	ENST00000297770.4	chr8	68340281:68340366:68346272:68346475:68396002:68396093,	68346273	68346475	68346383	68346383	Nonsense_Mutation	G	A	p.R311*
SKCM	TCGA-GN-A262-06	FCER2	ENST00000346664.5,ENST00000597921.1,ENST00000593418.1,ENST00000597934.1	chr19	7763241:7763295:7763626:7763740:7764624:7764727,	7763627	7763740	7763658	7763658	Nonsense_Mutation	C	T	p.W35*
SKCM	TCGA-GN-A262-06	TRMT1	ENST00000592814.1,ENST00000592062.1,ENST00000437766.1,ENST00000357720.4,ENST00000221504.8,ENST00000593157.1	chr19	13226440:13226582:13226810:13226866:13226959:13227154,	13226811	13226866	13226814	13226814	Nonsense_Mutation	G	A	p.Q103*
SKCM	TCGA-FR-A7UA-06	PSG6	ENST00000187910.2,ENST00000292125.2	chr19	43411073:43411328:43411727:43412006:43414731:43414956,	43411728	43412006	43411895	43411895	Nonsense_Mutation	C	T	p.W273*
SKCM	TCGA-FR-A7UA-06	PSG6	ENST00000599753.1	chr19	43411073:43411328:43411727:43412089:43414731:43414956,	43411728	43412089	43411895	43411895	Nonsense_Mutation	C	T	p.W273*
SKCM	TCGA-FR-A7UA-06	DAPP1	ENST00000512369.1	chr4	100784926:100785012:100787190:100787278:100789273:100789871,	100787191	100787278	100787272	100787272	Nonsense_Mutation	G	A	p.W256*
SKCM	TCGA-FR-A7UA-06	C1orf94	ENST00000373374.3,ENST00000488417.1	chr1	34666372:34666633:34667684:34667860:34673757:34673835,	34667685	34667860	34667858	34667858	Nonsense_Mutation	C	T	p.Q482*
SKCM	TCGA-EE-A2GB-06	IGLL1	ENST00000330377.2	chr22	23915555:23915772:23917153:23917269:23922171:23922426,	23917154	23917269	23917246	23917246	Nonsense_Mutation	C	T	p.W77*
SKCM	TCGA-EE-A2GB-06	IGLL1	ENST00000438703.1	chr22	23915555:23915772:23917153:23917272:23922171:23922426,	23917154	23917272	23917246	23917246	Nonsense_Mutation	C	T	p.W77*
SKCM	TCGA-EE-A2GB-06	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	21581734:21581928:21592309:21592486:21594730:21594955,	21592310	21592486	21592418	21592418	Nonsense_Mutation	C	T	p.Q725*
SKCM	TCGA-EE-A2GB-06	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922725	150922725	Nonsense_Mutation	G	A	p.Q2655*
SKCM	TCGA-FW-A3R5-06	RNF141	ENST00000528665.1	chr11	10552189:10552298:10555562:10555752:10562668:10562737,	10555563	10555752	10555624	10555624	Nonsense_Mutation	G	A	p.R28*
SKCM	TCGA-FW-A3R5-06	ADAMTSL1	ENST00000542621.1	chr9	18887828:18888041:18889565:18889746:18905779:18905889,	18889566	18889746	18889628	18889628	Nonsense_Mutation	C	T	p.Q1509*
SKCM	TCGA-FW-A3R5-06	MEGF10	ENST00000508365.1,ENST00000418761.2,ENST00000274473.6,ENST00000503335.2	chr5	126676221:126676322:126705601:126705694:126732223:126732470,	126705602	126705694	126705672	126705672	Nonsense_Mutation	G	A	p.W130*
SKCM	TCGA-FW-A3R5-06	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450703	55450703	Nonsense_Mutation	C	T	p.W495*
SKCM	TCGA-FW-A3R5-06	PTPN22	ENST00000538253.1,ENST00000532224.1,ENST00000420377.2,ENST00000359785.5,ENST00000484147.1,ENST00000528414.1,ENST00000525799.1	chr1	114377014:114377061:114377531:114377615:114380211:114381029,	114377532	114377615	114377567	114377567	Nonsense_Mutation	C	T	p.W620*
SKCM	TCGA-FW-A3R5-06	CNNM3	ENST00000305510.3,ENST00000377060.3	chr2	97493840:97493932:97494303:97494437:97494732:97494871,	97494304	97494437	97494389	97494389	Nonsense_Mutation	T	G	p.Y624*
SKCM	TCGA-FW-A3R5-06	LRP2	ENST00000443831.1,ENST00000263816.3	chr2	170101202:170101442:170103214:170103496:170103887:170104025,	170103215	170103496	170103479	170103479	Nonsense_Mutation	G	A	p.Q976*
SKCM	TCGA-FW-A3R5-06	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84539663:84539711:84553852:84553964:84558860:84558999,	84553853	84553964	84553916	84553916	Nonsense_Mutation	C	T	p.Q342*
SKCM	TCGA-FW-A3R5-06	TPRG1	ENST00000433971.1,ENST00000345063.3,ENST00000425670.1	chr3	188933088:188933172:188956521:188956698:189028174:189028328,	188956522	188956698	188956533	188956533	Nonsense_Mutation	G	A	p.W105*
SKCM	TCGA-FW-A3R5-06	JMY	ENST00000396137.4	chr5	78602197:78602284:78608225:78608321:78610079:78610674,	78608226	78608321	78608307	78608307	Nonsense_Mutation	C	T	p.R684*
SKCM	TCGA-FW-A3R5-06	CACNA1C	ENST00000399638.1,ENST00000480911.1,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2602367:2602552:2614007:2614111:2621977:2622150,	2614008	2614111	2614040	2614040	Nonsense_Mutation	G	A	p.W382*
SKCM	TCGA-FW-A3R5-06	KLRG1	ENST00000544226.1	chr12	9102720:9102832:9144801:9144906:9161570:9161671,	9144802	9144906	9144893	9144893	Nonsense_Mutation	G	A	p.W58*
SKCM	TCGA-FW-A3R5-06	MSR1	ENST00000445506.2,ENST00000262101.5	chr8	15967593:15967727:15977926:15978115:16001066:16001120,	15977927	15978115	15978098	15978098	Nonsense_Mutation	G	A	p.R351*
SKCM	TCGA-FW-A3R5-06	MIPOL1	ENST00000539062.2,ENST00000327441.7,ENST00000536774.1,ENST00000396294.2,ENST00000537471.1	chr14	37892059:37892154:37969112:37969343:38016109:38016337,	37969113	37969343	37969339	37969339	Nonsense_Mutation	C	T	p.Q420*
SKCM	TCGA-FW-A3R5-06	MYCT1	ENST00000532295.1	chr6	153019095:153019233:153042876:153043388:153043897:153044419,	153042877	153043388	153043320	153043320	Nonsense_Mutation	C	T	p.R214*
SKCM	TCGA-FW-A3R5-06	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236191	42236191	Nonsense_Mutation	G	A	p.Q380*
SKCM	TCGA-FW-A3R5-06	NAA35	ENST00000361671.5	chr9	88593181:88593296:88611313:88611492:88618499:88618559,	88611314	88611492	88611379	88611379	Nonsense_Mutation	C	T	p.R315*
SKCM	TCGA-FW-A3R5-06	FGL1	ENST00000518650.1,ENST00000398056.2,ENST00000427924.1,ENST00000522444.1,ENST00000398054.1,ENST00000381841.2,ENST00000522636.1,ENST00000381840.2	chr8	17722166:17722260:17726056:17726244:17726424:17726510,	17726057	17726244	17726125	17726125	Nonsense_Mutation	C	T	p.W237*
SKCM	TCGA-FW-A3R5-06	TNNT2	ENST00000367320.2,ENST00000458432.2,ENST00000367322.1,ENST00000367315.2	chr1	201331078:201331150:201332423:201332534:201333425:201333503,	201332424	201332534	201332429	201332429	Nonsense_Mutation	G	A	p.Q189*
SKCM	TCGA-FW-A3R5-06	CYP4A11	ENST00000468629.1,ENST00000371905.1,ENST00000371904.4,ENST00000310638.4	chr1	47399617:47399751:47399847:47400038:47400124:47400231,	47399848	47400038	47400029	47400029	Nonsense_Mutation	C	T	p.W147*
SKCM	TCGA-FW-A3R5-06	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157929346:157929387:157930985:157931207:157959622:157959983,	157930986	157931207	157931073	157931073	Nonsense_Mutation	G	A	p.R349*
SKCM	TCGA-FW-A3R5-06	LIMS1	ENST00000409441.1	chr2	109150911:109151050:109276060:109276220:109287236:109287271,109204766:109204881:109276060:109276220:109287236:109287271,109204921:109205084:109276060:109276220:109287236:109287271,109237728:109237917:109276060:109276220:109287236:109287271,	109276061	109276220	109276206	109276206	Nonsense_Mutation	G	T	p.G48*
SKCM	TCGA-FW-A3R5-06	SLC6A13	ENST00000343164.4,ENST00000445055.2	chr12	335555:335680:336730:336834:344255:344390,	336731	336834	336757	336757	Nonsense_Mutation	G	C	p.Y303*
SKCM	TCGA-FW-A3R5-06	CD22	ENST00000419549.2	chr19	35820114:35820133:35823455:35823827:35827051:35827244,	35823456	35823827	35823538	35823538	Nonsense_Mutation	G	A	p.W41*
SKCM	TCGA-FW-A3R5-06	CD22	ENST00000600905.1	chr19	35820114:35820133:35823496:35823827:35826938:35826945,	35823497	35823827	35823538	35823538	Nonsense_Mutation	G	A	p.W41*
SKCM	TCGA-FW-A3R5-06	CD22	ENST00000596492.1	chr19	35820114:35820133:35822921:35823827:35826938:35826945,	35822922	35823827	35823538	35823538	Nonsense_Mutation	G	A	p.W41*
SKCM	TCGA-FW-A3R5-06	SORL1	ENST00000532451.1,ENST00000260197.7	chr11	121348826:121348952:121358740:121358902:121360751:121360819,	121358741	121358902	121358776	121358776	Nonsense_Mutation	G	A	p.W188*
SKCM	TCGA-FW-A3R5-06	PMPCA	ENST00000371717.3,ENST00000444897.1,ENST00000399219.3	chr9	139313279:139313370:139313495:139313558:139316283:139316428,	139313496	139313558	139313499	139313499	Nonsense_Mutation	C	T	p.R402*
SKCM	TCGA-FW-A3R5-06	SLC13A3	ENST00000472148.1,ENST00000417157.2,ENST00000468915.1	chr20	45239084:45239248:45242098:45242364:45279949:45280079,45239084:45239248:45242098:45242364:45298681:45298778,	45242099	45242364	45242109	45242109	Nonsense_Mutation	G	A	p.Q123*
SKCM	TCGA-FW-A3R5-06	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277716	238277716	Nonsense_Mutation	G	A	p.R1464*
SKCM	TCGA-FW-A3R5-06	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749452	196749452	Nonsense_Mutation	G	A	p.R1874*
SKCM	TCGA-FW-A3R5-06	TSNAXIP1	ENST00000565148.1,ENST00000568990.1,ENST00000388833.3,ENST00000561639.1	chr16	67848204:67848304:67854741:67854854:67855001:67855128,	67854742	67854854	67854817	67854817	Nonsense_Mutation	C	T	p.R21*
SKCM	TCGA-FW-A3R5-06	PPM1K	ENST00000295908.7,ENST00000315194.4,ENST00000506423.1,ENST00000514204.1	chr4	89198294:89198395:89199295:89199794:89205557:89205713,	89199296	89199794	89199393	89199393	Nonsense_Mutation	G	A	p.Q115*
SKCM	TCGA-FW-A3R5-06	TRAPPC8	ENST00000582513.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29489629:29489723:29493331:29493485:29496234:29496409,	29493332	29493485	29493334	29493334	Nonsense_Mutation	G	A	p.Q257*
SKCM	TCGA-FW-A3R5-06	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352918	113352918	Nonsense_Mutation	C	T	p.Q739*
SKCM	TCGA-FW-A3R5-06	MACROD2	ENST00000477147.1,ENST00000494602.1,ENST00000490428.1,ENST00000217246.4,ENST00000310348.4	chr20	13982933:13983050:14066266:14066374:14474124:14474154,	14066267	14066374	14066290	14066290	Nonsense_Mutation	C	T	p.Q63*
SKCM	TCGA-FW-A3R5-06	ZSCAN10	ENST00000575108.1	chr16	3141764:3141829:3142049:3142317:3142542:3142861,3141764:3141829:3142049:3142317:3149190:3149229,	3142050	3142317	3142167	3142167	Nonsense_Mutation	G	A	p.R128*
SKCM	TCGA-FW-A3R5-06	ESRRG	ENST00000391890.3,ENST00000366937.1	chr1	216692493:216692763:216737560:216737743:216741329:216741440,	216737561	216737743	216737577	216737577	Nonsense_Mutation	C	T	p.W266*
SKCM	TCGA-FW-A3R5-06	ESRRG	ENST00000366938.2,ENST00000359162.2,ENST00000366940.2,ENST00000493748.1,ENST00000360012.3,ENST00000361395.2,ENST00000361525.3,ENST00000408911.3,ENST00000475275.1,ENST00000463665.1,ENST00000487276.1,ENST00000493603.1	chr1	216692493:216692763:216737560:216737722:216741329:216741440,	216737561	216737722	216737577	216737577	Nonsense_Mutation	C	T	p.W266*
SKCM	TCGA-FW-A3R5-06	ATF6	ENST00000367942.3	chr1	161751701:161751789:161753779:161753886:161761197:161761327,	161753780	161753886	161753803	161753803	Nonsense_Mutation	C	T	p.Q91*
SKCM	TCGA-FW-A3R5-06	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10221199:10221344:10228193:10228328:10231195:10231247,	10228194	10228328	10228227	10228227	Nonsense_Mutation	C	T	p.Q833*
SKCM	TCGA-FW-A3R5-06	NLRP11	ENST00000590409.1,ENST00000592953.1,ENST00000360133.3,ENST00000443188.1,ENST00000589093.1,ENST00000589824.2	chr19	56300172:56300343:56300594:56300765:56303666:56303837,	56300595	56300765	56300731	56300731	Nonsense_Mutation	G	A	p.Q850*
SKCM	TCGA-FW-A3R5-06	CALD1	ENST00000436461.2,ENST00000443197.1,ENST00000543443.1,ENST00000424922.1,ENST00000417172.1,ENST00000482470.1,ENST00000361901.2	chr7	134613504:134613651:134617738:134618141:134625842:134625988,	134617739	134618141	134617989	134617989	Nonsense_Mutation	C	T	p.Q157*
SKCM	TCGA-FW-A3R5-06	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000538472.1,ENST00000420015.2	chr16	14704521:14704666:14711446:14711507:14720962:14720993,	14711447	14711507	14711453	14711453	Nonsense_Mutation	G	A	p.R128*
SKCM	TCGA-FW-A3R5-06	SEC24A	ENST00000398844.2	chr5	134039448:134039622:134041016:134041127:134044402:134044578,	134041017	134041127	134041097	134041097	Nonsense_Mutation	C	T	p.Q841*
SKCM	TCGA-FW-A3R5-06	MEGF8	ENST00000251268.6	chr19	42852440:42852624:42853650:42853851:42854299:42854536,	42853651	42853851	42853768	42853768	Nonsense_Mutation	C	T	p.Q739*
SKCM	TCGA-FW-A3R5-06	CD38	ENST00000510674.1	chr4	15818218:15818263:15826503:15826621:15835839:15835925,	15826504	15826621	15826515	15826515	Nonsense_Mutation	G	A	p.W125*
SKCM	TCGA-FW-A3R5-06	CD38	ENST00000226279.3	chr4	15818218:15818263:15826503:15826639:15835839:15835925,	15826504	15826639	15826515	15826515	Nonsense_Mutation	G	A	p.W125*
SKCM	TCGA-FW-A3R5-06	PKHD1L1	ENST00000378402.5	chr8	110437313:110437461:110439230:110439385:110441568:110441691,	110439231	110439385	110439352	110439352	Nonsense_Mutation	G	A	p.W989*
SKCM	TCGA-FW-A3R5-06	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000338354.3	chr10	124344786:124344825:124345575:124345899:124348459:124348783,	124345576	124345899	124345685	124345685	Nonsense_Mutation	G	A	p.W523*
SKCM	TCGA-FW-A3R5-06	ANAPC16	ENST00000299381.4	chr10	73975805:73975896:73983645:73983814:73990123:73990188,	73983646	73983814	73983730	73983730	Nonsense_Mutation	G	T	p.G20*
SKCM	TCGA-FW-A3R5-06	PLB1	ENST00000444257.1,ENST00000327757.5,ENST00000404858.1,ENST00000422425.2	chr2	28827593:28827626:28828719:28828815:28829362:28829434,	28828720	28828815	28828806	28828806	Nonsense_Mutation	G	A	p.W1005*
SKCM	TCGA-FW-A3R5-06	SLC9C1	ENST00000486574.1,ENST00000305815.5,ENST00000487372.1,ENST00000471295.1	chr3	111996551:111996707:111997575:111997704:111999529:111999630,	111997576	111997704	111997701	111997701	Nonsense_Mutation	G	A	p.Q65*
SKCM	TCGA-FW-A3R5-06	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000509912.1,ENST00000512193.1,ENST00000439128.2	chr4	170483287:170483347:170498078:170498230:170501992:170502053,	170498079	170498230	170498183	170498183	Nonsense_Mutation	G	A	p.Q306*
SKCM	TCGA-FW-A3R5-06	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000422669.1,ENST00000272273.5,ENST00000354476.3,ENST00000418533.2	chr2	33572433:33572577:33585663:33585846:33586495:33586582,	33585664	33585846	33585684	33585684	Nonsense_Mutation	C	T	p.Q1341*
SKCM	TCGA-FW-A3R5-06	LTBP1	ENST00000402934.1	chr2	33572433:33572577:33585669:33585846:33586495:33586582,	33585670	33585846	33585684	33585684	Nonsense_Mutation	C	T	p.Q1341*
SKCM	TCGA-FW-A3R5-06	OAS3	ENST00000228928.7	chr12	113402165:113402213:113403548:113403834:113405222:113405398,	113403549	113403834	113403696	113403696	Nonsense_Mutation	C	T	p.Q851*
SKCM	TCGA-FW-A3R5-06	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266120	75266120	Nonsense_Mutation	C	T	p.R1374*
SKCM	TCGA-FW-A3R5-06	OFCC1	ENST00000460066.1,ENST00000316020.6,ENST00000491508.1,ENST00000466385.1,ENST00000460363.2,ENST00000492094.2,ENST00000472329.1	chr6	9933002:9933179:9933474:9933541:9939521:9939552,	9933475	9933541	9933535	9933535	Nonsense_Mutation	G	A	p.Q75*
SKCM	TCGA-FW-A3R5-06	COL9A3	ENST00000343916.3,ENST00000466192.1,ENST00000467819.1	chr20	61467829:61467884:61468434:61468617:61470035:61470113,	61468435	61468617	61468560	61468560	Nonsense_Mutation	C	T	p.R577*
SKCM	TCGA-FW-A3R5-06	SORCS3	ENST00000369701.3	chr10	106865154:106865273:106899154:106899244:106907374:106907554,	106899155	106899244	106899194	106899194	Nonsense_Mutation	C	T	p.R418*
SKCM	TCGA-FW-A3R5-06	ADAMDEC1	ENST00000538205.1,ENST00000520193.1,ENST00000522298.1,ENST00000256412.4	chr8	24255992:24256064:24256386:24256553:24256905:24256987,	24256387	24256553	24256502	24256502	Nonsense_Mutation	G	A	p.W214*
SKCM	TCGA-FW-A3R5-06	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469372	21469372	Nonsense_Mutation	C	T	p.Q197*
SKCM	TCGA-FW-A3R5-06	BTBD8	ENST00000342818.3	chr1	92604906:92604987:92606671:92606768:92612736:92612825,	92606672	92606768	92606763	92606763	Nonsense_Mutation	C	T	p.Q309*
SKCM	TCGA-FW-A3R5-06	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96063853:96063922:96076482:96076598:96077273:96077487,	96076483	96076598	96076520	96076520	Nonsense_Mutation	C	T	p.W491*
SKCM	TCGA-FW-A3R5-06	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132005	51132005	Nonsense_Mutation	G	A	p.Q143*
SKCM	TCGA-FW-A3R5-06	SLC35B3	ENST00000339306.5,ENST00000379660.4	chr6	8420953:8421061:8422702:8422857:8428169:8428291,	8422703	8422857	8422706	8422706	Nonsense_Mutation	G	A	p.Q191*
SKCM	TCGA-FW-A3R5-06	LAPTM4B	ENST00000445593.2,ENST00000521545.2	chr8	98831367:98831466:98837285:98837381:98863624:98863702,	98837286	98837381	98837319	98837319	Nonsense_Mutation	C	T	p.R272*
SKCM	TCGA-FW-A3R5-06	HYDIN	ENST00000393567.2	chr16	71022295:71022415:71025220:71025299:71025972:71026113,	71025221	71025299	71025259	71025259	Nonsense_Mutation	C	A	p.E1276*
SKCM	TCGA-FW-A3R5-06	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000473813.1,ENST00000424441.1	chr21	40587162:40587288:40590077:40590198:40590430:40590586,	40590078	40590198	40590106	40590106	Nonsense_Mutation	G	A	p.R1211*
SKCM	TCGA-FW-A3R5-06	NEK5	ENST00000355568.4	chr13	52657395:52657488:52660412:52660499:52661473:52661590,	52660413	52660499	52660491	52660491	Nonsense_Mutation	C	T	p.W467*
SKCM	TCGA-FW-A3R5-06	HTR4	ENST00000360693.3	chr5	147862418:147862856:147863822:147863942:147889018:147889587,	147863823	147863942	147863901	147863901	Nonsense_Mutation	C	T	p.W373*
SKCM	TCGA-FW-A3R5-06	WDR72	ENST00000557913.1,ENST00000560036.1,ENST00000396328.1,ENST00000360509.5,ENST00000559418.1	chr15	53994330:53994551:53997184:53997430:53998123:53998265,	53997185	53997430	53997401	53997401	Nonsense_Mutation	G	A	p.Q378*
SKCM	TCGA-FW-A3R5-06	FCHSD1	ENST00000435817.2	chr5	141028738:141028875:141028961:141029103:141029453:141029521,	141028962	141029103	141029033	141029033	Nonsense_Mutation	G	A	p.Q102*
SKCM	TCGA-FW-A3R5-06	FCHSD1	ENST00000522126.1,ENST00000522783.1,ENST00000519800.1	chr5	141028738:141028875:141028961:141029097:141029453:141029521,	141028962	141029097	141029033	141029033	Nonsense_Mutation	G	A	p.Q102*
SKCM	TCGA-FW-A3R5-06	SLC11A1	ENST00000469799.1,ENST00000481524.1	chr2	219247682:219247825:219249869:219249989:219251357:219251390,219249041:219249088:219249869:219249989:219251357:219251390,219247031:219247098:219249869:219249989:219251357:219251390,	219249870	219249989	219249889	219249889	Nonsense_Mutation	G	A	p.W98*
SKCM	TCGA-FW-A3R5-06	SLC11A1	ENST00000469449.1	chr2	219249041:219249088:219249869:219250208:219251357:219251390,	219249870	219250208	219249889	219249889	Nonsense_Mutation	G	A	p.W98*
SKCM	TCGA-FW-A3R5-06	TRMT10A	ENST00000394877.3,ENST00000273962.3,ENST00000394876.2	chr4	100469769:100470513:100472041:100472147:100474941:100475091,	100472042	100472147	100472066	100472066	Nonsense_Mutation	G	A	p.R243*
SKCM	TCGA-FW-A3R5-06	GPR161	ENST00000361697.2,ENST00000537209.1,ENST00000271357.5,ENST00000367835.1,ENST00000367838.1,ENST00000493800.1	chr1	168059801:168059906:168065745:168066470:168073714:168074132,	168065746	168066470	168066390	168066390	Nonsense_Mutation	C	T	p.W152*
SKCM	TCGA-FW-A3R5-06	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	101020724:101020797:101051158:101051260:101052189:101052315,	101051159	101051260	101051255	101051255	Nonsense_Mutation	C	T	p.W690*
SKCM	TCGA-FW-A3R5-06	DPY19L2	ENST00000324472.4,ENST00000439061.2,ENST00000413230.2	chr12	63954130:63954442:63963003:63963129:63964537:63964637,	63963004	63963129	63963095	63963095	Nonsense_Mutation	G	A	p.R679*
SKCM	TCGA-FW-A3R5-06	SCN5A	ENST00000443581.1,ENST00000455624.2,ENST00000423572.2	chr3	38618151:38618272:38620824:38620983:38622421:38622862,	38620825	38620983	38620858	38620858	Nonsense_Mutation	C	T	p.W1119*
SKCM	TCGA-FW-A3R5-06	SCN5A	ENST00000413689.1,ENST00000333535.4,ENST00000425664.1,ENST00000414099.2	chr3	38618151:38618272:38620824:38620986:38622421:38622862,	38620825	38620986	38620858	38620858	Nonsense_Mutation	C	T	p.W1119*
SKCM	TCGA-FW-A3R5-06	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604474	179604474	Nonsense_Mutation	G	A	p.Q4496*
SKCM	TCGA-FW-A3R5-06	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527590	29527590	Nonsense_Mutation	C	T	p.Q347*
SKCM	TCGA-FW-A3R5-06	HACE1	ENST00000369127.4,ENST00000416605.2,ENST00000517424.1,ENST00000262903.4,ENST00000517995.1	chr6	105192386:105192485:105198215:105198347:105219067:105219264,	105198216	105198347	105198317	105198317	Nonsense_Mutation	G	A	p.R748*
SKCM	TCGA-FW-A3R5-06	MYO1A	ENST00000554234.1,ENST00000544473.1,ENST00000442789.2,ENST00000300119.3	chr12	57437023:57437142:57437639:57437787:57437889:57437993,	57437640	57437787	57437748	57437748	Nonsense_Mutation	G	A	p.R262*
SKCM	TCGA-FW-A3R5-06	ZNF382	ENST00000292928.2	chr19	37098453:37098524:37100803:37100955:37101551:37101644,	37100804	37100955	37100898	37100898	Nonsense_Mutation	C	T	p.Q28*
SKCM	TCGA-FW-A3R5-06	ZNF382	ENST00000439428.1	chr19	37098453:37098524:37100828:37100955:37101551:37101644,	37100829	37100955	37100898	37100898	Nonsense_Mutation	C	T	p.Q28*
SKCM	TCGA-FW-A3R5-06	NFASC	ENST00000504476.1,ENST00000539706.1,ENST00000404076.1,ENST00000367171.4,ENST00000338515.6,ENST00000367170.4,ENST00000430393.1,ENST00000367172.4,ENST00000404907.1,ENST00000360049.4,ENST00000513543.1,ENST00000338586.6,ENST00000512826.1	chr1	204951011:204951148:204953154:204953270:204955037:204955242,	204953155	204953270	204953222	204953222	Nonsense_Mutation	G	A	p.W846*
SKCM	TCGA-FW-A3R5-06	USP40	ENST00000450966.1,ENST00000427112.2,ENST00000251722.6	chr2	234438076:234438158:234442124:234442425:234449307:234449412,	234442125	234442425	234442224	234442224	Nonsense_Mutation	G	A	p.Q457*
SKCM	TCGA-FW-A3R5-06	VRK3	ENST00000596814.1,ENST00000377011.2,ENST00000601341.1,ENST00000600137.1,ENST00000601912.1,ENST00000443401.2	chr19	50504046:50504111:50510825:50511083:50519280:50519420,	50510826	50511083	50511003	50511003	Nonsense_Mutation	G	A	p.Q124*
SKCM	TCGA-FW-A3R5-06	UTP20	ENST00000261637.4	chr12	101738372:101738528:101739331:101739472:101740228:101740366,	101739332	101739472	101739389	101739389	Nonsense_Mutation	C	T	p.Q1555*
SKCM	TCGA-FW-A3R5-06	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157667107	157667107	Nonsense_Mutation	G	A	p.Q223*
SKCM	TCGA-FW-A3R5-06	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157667107	157667107	Nonsense_Mutation	G	A	p.Q223*
SKCM	TCGA-FW-A3R5-06	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157667107	157667107	Nonsense_Mutation	G	A	p.Q223*
SKCM	TCGA-FW-A3R5-06	PDLIM3	ENST00000284770.5,ENST00000284767.5	chr4	186427675:186427806:186429452:186429716:186435423:186435491,	186429453	186429716	186429496	186429496	Nonsense_Mutation	G	A	p.Q207*
SKCM	TCGA-FW-A3R5-06	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43796276	43796276	Nonsense_Mutation	C	T	p.R144*
SKCM	TCGA-FW-A3R5-06	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10085512:10085548:10088263:10088407:10089600:10089735,	10088264	10088407	10088351	10088351	Nonsense_Mutation	C	T	p.R408*
SKCM	TCGA-FW-A3R5-06	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232942	71232942	Nonsense_Mutation	C	T	p.Q441*
SKCM	TCGA-FW-A3R5-06	ACAD10	ENST00000508303.1,ENST00000392636.2	chr12	112165765:112165947:112167609:112167760:112171726:112171851,112159474:112159543:112167609:112167760:112171726:112171851,	112167610	112167760	112167654	112167654	Nonsense_Mutation	C	T	p.R461*
SKCM	TCGA-FW-A3R5-06	UBE2Q2	ENST00000338677.4,ENST00000426727.2	chr15	76165768:76165909:76175706:76175765:76189335:76189402,76171438:76171529:76175706:76175765:76191767:76191835,	76175707	76175765	76175737	76175737	Nonsense_Mutation	C	T	p.R286*
SKCM	TCGA-FW-A3R5-06	NOSTRIN	ENST00000397206.2,ENST00000444448.2,ENST00000447264.2,ENST00000458381.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169687981:169688044:169690736:169690835:169699501:169699627,	169690737	169690835	169690824	169690824	Nonsense_Mutation	G	T	p.E165*
SKCM	TCGA-FW-A3R5-06	PKM	ENST00000449901.2,ENST00000335181.5,ENST00000567118.1	chr15	72491969:72492097:72492814:72492996:72494794:72494961,	72492815	72492996	72492920	72492920	Nonsense_Mutation	G	A	p.Q462*
SKCM	TCGA-FW-A3R5-06	DNAH7	ENST00000312428.6	chr2	196651733:196651895:196659061:196659262:196661299:196661461,	196659062	196659262	196659121	196659121	Nonsense_Mutation	G	A	p.R3553*
SKCM	TCGA-FW-A3R5-06	RIC3	ENST00000531450.1	chr11	8132453:8132684:8148205:8148438:8158924:8159014,	8148206	8148438	8148302	8148302	Nonsense_Mutation	G	A	p.R30*
SKCM	TCGA-FW-A3R5-06	RIC3	ENST00000524799.1,ENST00000343202.4	chr11	8132453:8132684:8148205:8148351:8190412:8190536,8132453:8132684:8148205:8148351:8158924:8159014,	8148206	8148351	8148302	8148302	Nonsense_Mutation	G	A	p.R30*
SKCM	TCGA-FW-A3R5-06	RIC3	ENST00000309737.6,ENST00000539720.1,ENST00000528463.1	chr11	8132453:8132684:8148205:8148354:8158924:8159014,	8148206	8148354	8148302	8148302	Nonsense_Mutation	G	A	p.R30*
SKCM	TCGA-FW-A3R5-06	TPST2	ENST00000398110.2,ENST00000338754.4	chr22	26932253:26932452:26936754:26937684:26940569:26940641,	26936755	26937684	26937530	26937530	Nonsense_Mutation	G	A	p.Q23*
SKCM	TCGA-FW-A3R5-06	EFEMP1	ENST00000424836.2	chr2	56102080:56102200:56108746:56108869:56144799:56145186,	56108747	56108869	56108789	56108789	Nonsense_Mutation	G	A	p.Q200*
SKCM	TCGA-FW-A3R5-06	PON1	ENST00000433729.1,ENST00000222381.3,ENST00000542556.1	chr7	94931516:94931645:94935596:94935678:94937322:94937523,	94935597	94935678	94935616	94935616	Nonsense_Mutation	C	T	p.W254*
SKCM	TCGA-FW-A3R5-06	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7	chr4	169337832:169337948:169340452:169340548:169341411:169341531,	169340453	169340548	169340494	169340494	Nonsense_Mutation	G	A	p.Q857*
SKCM	TCGA-FW-A3R5-06	DDX60L	ENST00000504793.1	chr4	169337832:169337948:169340452:169340535:169341411:169341531,	169340453	169340535	169340494	169340494	Nonsense_Mutation	G	A	p.Q857*
SKCM	TCGA-FW-A3R5-06	SLC5A12	ENST00000280467.6,ENST00000527405.1,ENST00000533617.1,ENST00000396005.3	chr11	26725077:26725218:26725339:26725494:26730858:26730926,	26725340	26725494	26725472	26725472	Nonsense_Mutation	C	T	p.W183*
SKCM	TCGA-FW-A3R5-06	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120192591	120192591	Nonsense_Mutation	C	T	p.R526*
SKCM	TCGA-FW-A3R5-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831800	61831800	Nonsense_Mutation	G	A	p.Q2947*
SKCM	TCGA-FW-A3R5-06	ARHGEF38	ENST00000265154.2,ENST00000420470.2	chr4	106510404:106510592:106534540:106534664:106552054:106552202,	106534541	106534664	106534592	106534592	Nonsense_Mutation	C	T	p.Q146*
SKCM	TCGA-FW-A3R5-06	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000396104.2	chr16	20491894:20492022:20492143:20492243:20494379:20494499,	20492144	20492243	20492235	20492235	Nonsense_Mutation	C	T	p.R501*
SKCM	TCGA-FW-A3R5-06	CWC27	ENST00000545000.1,ENST00000381070.3	chr5	64267529:64267639:64272961:64273065:64313985:64314418,	64272962	64273065	64273001	64273001	Nonsense_Mutation	C	T	p.Q398*
SKCM	TCGA-FW-A3R5-06	MKX	ENST00000460919.2,ENST00000375790.5,ENST00000419761.1	chr10	28023384:28023720:28024149:28024303:28030273:28030433,	28024150	28024303	28024255	28024255	Nonsense_Mutation	G	A	p.R133*
SKCM	TCGA-FW-A3R5-06	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000431670.2,ENST00000412622.1	chr3	111667778:111667922:111671418:111671559:111672776:111672876,	111671419	111671559	111671488	111671488	Nonsense_Mutation	C	T	p.R901*
SKCM	TCGA-FW-A3R5-06	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438240	58438240	Nonsense_Mutation	G	A	p.R437*
SKCM	TCGA-FW-A3R5-06	TM4SF18	ENST00000470080.1,ENST00000296059.2	chr3	149039063:149039279:149040042:149040223:149042666:149042809,	149040043	149040223	149040164	149040164	Nonsense_Mutation	C	T	p.W157*
SKCM	TCGA-FW-A3R5-06	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000609119.1,ENST00000542537.1	chr1	237935311:237935400:237936819:237936948:237941965:237942070,	237936820	237936948	237936946	237936946	Nonsense_Mutation	C	T	p.Q3925*
SKCM	TCGA-FW-A3R5-06	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109683983:109684253:109685410:109685508:109687788:109687909,	109685411	109685508	109685438	109685438	Nonsense_Mutation	C	T	p.Q1867*
SKCM	TCGA-FW-A3R5-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897018	36897018	Nonsense_Mutation	G	A	p.Q805*
SKCM	TCGA-FW-A3R5-06	INTS4	ENST00000534064.1,ENST00000529807.1	chr11	77692504:77692622:77702153:77702345:77705635:77705699,	77702154	77702345	77702315	77702315	Nonsense_Mutation	G	A	p.R29*
SKCM	TCGA-FW-A3R5-06	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15410454:15410596:15452236:15452406:15468772:15468949,	15452237	15452406	15452403	15452403	Nonsense_Mutation	C	T	p.R164*
SKCM	TCGA-FW-A3R5-06	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31322989	31322989	Nonsense_Mutation	G	A	p.Q303*
SKCM	TCGA-FW-A3R5-06	ANKRD10	ENST00000375758.5,ENST00000310847.4	chr13	111545543:111545610:111546455:111546549:111558379:111558442,	111546456	111546549	111546503	111546503	Nonsense_Mutation	G	A	p.Q168*
SKCM	TCGA-FW-A3R5-06	POLN	ENST00000511098.1,ENST00000511885.2,ENST00000382865.1	chr4	2130905:2130983:2132959:2133017:2158514:2158580,	2132960	2133017	2132987	2132987	Nonsense_Mutation	G	A	p.Q588*
SKCM	TCGA-FW-A3R5-06	IL36G	ENST00000259205.4	chr2	113736196:113736270:113736797:113736902:113737585:113737725,	113736798	113736902	113736846	113736846	Nonsense_Mutation	G	A	p.W35*
SKCM	TCGA-FW-A3R5-06	GCSAML	ENST00000526896.1	chr1	247690241:247690356:247712437:247712522:247719708:247719768,	247712438	247712522	247712462	247712462	Nonsense_Mutation	C	T	p.Q111*
SKCM	TCGA-FW-A3R5-06	GCSAML	ENST00000366489.1	chr1	247690241:247690356:247712346:247712522:247726891:247726941,	247712347	247712522	247712462	247712462	Nonsense_Mutation	C	T	p.Q111*
SKCM	TCGA-FW-A3R5-06	INTS10	ENST00000521008.1,ENST00000397977.3	chr8	19701638:19701749:19703214:19703308:19709159:19709185,	19703215	19703308	19703292	19703292	Nonsense_Mutation	C	T	p.Q654*
SKCM	TCGA-FW-A3R5-06	SLC11A1	ENST00000469799.1,ENST00000481524.1	chr2	219247682:219247825:219249869:219249989:219251357:219251390,219249041:219249088:219249869:219249989:219251357:219251390,219247031:219247098:219249869:219249989:219251357:219251390,	219249870	219249989	219249890	219249890	Nonsense_Mutation	G	A	p.W98*
SKCM	TCGA-FW-A3R5-06	SLC11A1	ENST00000469449.1	chr2	219249041:219249088:219249869:219250208:219251357:219251390,	219249870	219250208	219249890	219249890	Nonsense_Mutation	G	A	p.W98*
SKCM	TCGA-FW-A3R5-06	TBC1D9	ENST00000442267.2	chr4	141580741:141580859:141583046:141583261:141590070:141590221,	141583047	141583261	141583073	141583073	Nonsense_Mutation	G	A	p.R593*
SKCM	TCGA-FW-A3R5-06	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118247	58118247	Nonsense_Mutation	C	T	p.R452*
SKCM	TCGA-FW-A3R5-06	BCHE	ENST00000264381.3	chr3	165490871:165491294:165503932:165504099:165547304:165548829,	165503933	165504099	165503968	165503968	Nonsense_Mutation	C	T	p.W550*
SKCM	TCGA-FW-A3R5-06	LMF2	ENST00000505981.1,ENST00000380796.3,ENST00000474879.2,ENST00000216080.5	chr22	50944124:50944244:50944463:50944642:50944713:50944931,	50944464	50944642	50944496	50944496	Nonsense_Mutation	G	A	p.R223*
SKCM	TCGA-FW-A3R5-06	SERGEF	ENST00000525422.1,ENST00000527494.1,ENST00000528200.1,ENST00000265965.5,ENST00000524716.1,ENST00000532265.1,ENST00000530613.1,ENST00000532212.1,ENST00000529728.1,ENST00000532389.1	chr11	18022070:18022104:18025987:18026082:18028137:18028293,	18025988	18026082	18026017	18026017	Nonsense_Mutation	G	A	p.R140*
SKCM	TCGA-FW-A3R5-06	DOK5	ENST00000395939.1,ENST00000262593.5	chr20	53171471:53171579:53205021:53205136:53205225:53205345,	53205022	53205136	53205055	53205055	Nonsense_Mutation	C	T	p.R70*
SKCM	TCGA-FW-A3R5-06	NEK5	ENST00000355568.4,ENST00000465811.3	chr13	52678633:52678688:52682453:52682540:52684475:52684546,	52682454	52682540	52682524	52682524	Nonsense_Mutation	G	A	p.R162*
SKCM	TCGA-FW-A3R5-06	TAOK1	ENST00000261716.3	chr17	27849305:27849537:27857424:27857637:27861135:27861318,	27857425	27857637	27857437	27857437	Nonsense_Mutation	C	T	p.Q721*
SKCM	TCGA-FW-A3R5-06	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219*
SKCM	TCGA-FW-A3R5-06	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219*
SKCM	TCGA-FW-A3R5-06	GALNT14	ENST00000481023.1,ENST00000486564.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31165066:31165170:31167723:31167808:31168648:31168736,	31167724	31167808	31167799	31167799	Nonsense_Mutation	C	T	p.W251*
SKCM	TCGA-FW-A3R5-06	LILRB2	ENST00000314446.5,ENST00000455108.1,ENST00000391749.4,ENST00000434421.1,ENST00000391748.1	chr19	54780234:54780310:54780660:54780783:54781403:54781451,	54780661	54780783	54780682	54780682	Nonsense_Mutation	G	A	p.Q487*
SKCM	TCGA-FW-A3R5-06	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3	chr1	154956317:154956542:154960580:154961325:154962035:154962183,	154960581	154961325	154960590	154960590	Nonsense_Mutation	C	T	p.Q128*
SKCM	TCGA-FW-A3R5-06	KMT2C	ENST00000418673.1,ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151921519:151921701:151927007:151927112:151927304:151927406,	151927008	151927112	151927040	151927040	Nonsense_Mutation	G	A	p.Q982*
SKCM	TCGA-FW-A3R5-06	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073649	197073649	Nonsense_Mutation	G	A	p.R1578*
SKCM	TCGA-FW-A3R5-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36898763	36898763	Nonsense_Mutation	C	T	p.W223*
SKCM	TCGA-FW-A3R5-06	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205563	236205563	Nonsense_Mutation	C	T	p.W261*
SKCM	TCGA-FW-A3R5-06	DEPDC5	ENST00000266091.3,ENST00000535622.1,ENST00000382111.2,ENST00000479261.1,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32270263:32270391:32272142:32272251:32275510:32275682,	32272143	32272251	32272248	32272248	Nonsense_Mutation	C	T	p.R1268*
SKCM	TCGA-FW-A3R5-06	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	120989014:120989427:120996010:120996581:120998460:120999053,	120996011	120996581	120996131	120996131	Nonsense_Mutation	C	T	p.Q442*
SKCM	TCGA-FW-A3R5-06	BCHE	ENST00000264381.3	chr3	165490871:165491294:165503932:165504099:165547304:165548829,	165503933	165504099	165503967	165503967	Nonsense_Mutation	C	T	p.W550*
SKCM	TCGA-FW-A3R5-06	ATP2A3	ENST00000570845.1	chr17	3828689:3828735:3831533:3831621:3831956:3832074,3831274:3831332:3831533:3831621:3831956:3832074,	3831534	3831621	3831551	3831551	Nonsense_Mutation	C	T	p.W1017*
SKCM	TCGA-FW-A3R5-06	ATP2A3	ENST00000359983.3	chr17	3828689:3828735:3831520:3831621:3831956:3832074,3831274:3831332:3831520:3831621:3831956:3832074,	3831521	3831621	3831551	3831551	Nonsense_Mutation	C	T	p.W1017*
SKCM	TCGA-FW-A3R5-06	GP2	ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20327277:20327362:20328534:20328697:20329506:20329752,	20328535	20328697	20328687	20328687	Nonsense_Mutation	G	A	p.Q422*
SKCM	TCGA-FW-A3R5-06	SLC12A3	ENST00000563236.1,ENST00000262502.5,ENST00000566786.1,ENST00000438926.2	chr16	56916377:56916409:56917960:56918116:56919176:56919276,	56917961	56918116	56917978	56917978	Nonsense_Mutation	C	T	p.Q563*
SKCM	TCGA-FW-A3R5-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61835772	61835772	Nonsense_Mutation	G	A	p.R1623*
SKCM	TCGA-FW-A3R5-06	BMS1	ENST00000374518.5	chr10	43282615:43282695:43285770:43285959:43287074:43287217,	43285771	43285959	43285837	43285837	Nonsense_Mutation	C	T	p.Q172*
SKCM	TCGA-FW-A3R5-06	SIPA1L2	ENST00000262861.4,ENST00000308942.4,ENST00000366630.1	chr1	232579347:232579431:232581274:232581532:232596632:232596907,	232581275	232581532	232581315	232581315	Nonsense_Mutation	G	A	p.R1105*
SKCM	TCGA-FW-A3R5-06	PMFBP1	ENST00000237353.10,ENST00000537465.1	chr16	72153749:72153988:72156812:72156887:72157444:72157548,	72156813	72156887	72156856	72156856	Nonsense_Mutation	G	A	p.R914*
SKCM	TCGA-FW-A3R5-06	TTN	ENST00000342175.6	chr2	179617850:179617907:179620948:179621524:179623710:179623899,	179620949	179621524	179621171	179621171	Nonsense_Mutation	G	A	p.Q3678*
SKCM	TCGA-FW-A3R5-06	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150761	128150761	Nonsense_Mutation	C	T	p.W111*
SKCM	TCGA-FW-A3R5-06	NADK	ENST00000378625.1,ENST00000342348.5,ENST00000497186.1,ENST00000344463.4,ENST00000400922.2,ENST00000477235.1,ENST00000341426.5,ENST00000341991.3,ENST00000469045.1,ENST00000480499.1	chr1	1686110:1686137:1686812:1686915:1687696:1687766,	1686813	1686915	1686834	1686834	Nonsense_Mutation	G	A	p.Q368*
SKCM	TCGA-FW-A3R5-06	LIAS	ENST00000261434.3,ENST00000340169.2	chr4	39466904:39466962:39469137:39469266:39471638:39471784,	39469138	39469266	39469178	39469178	Nonsense_Mutation	C	T	p.R217*
SKCM	TCGA-FW-A3R5-06	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000585850.1,ENST00000428549.4,ENST00000430352.2,ENST00000586539.1	chr17	66928428:66928655:66929308:66929412:66933091:66933256,	66929309	66929412	66929360	66929360	Nonsense_Mutation	C	T	p.W173*
SKCM	TCGA-FW-A3R5-06	CCDC60	ENST00000327554.2	chr12	119961497:119961623:119966419:119966551:119968678:119968868,	119966420	119966551	119966478	119966478	Nonsense_Mutation	C	T	p.Q430*
SKCM	TCGA-FW-A3R5-06	TRAPPC9	ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	141445210:141445339:141449150:141449296:141460888:141461029,	141449151	141449296	141449223	141449223	Nonsense_Mutation	G	A	p.Q318*
SKCM	TCGA-FW-A3R5-06	ACER3	ENST00000527508.1	chr11	76701582:76701618:76709806:76709865:76722373:76722419,	76709807	76709865	76709843	76709843	Nonsense_Mutation	C	T	p.R159*
SKCM	TCGA-FW-A3R5-06	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000494857.1	chr8	17409272:17409495:17412068:17412208:17415803:17415906,	17412069	17412208	17412148	17412148	Nonsense_Mutation	C	T	p.Q379*
SKCM	TCGA-FW-A3R5-06	AGAP6	ENST00000412531.3	chr10	51749067:51749136:51751435:51751504:51754154:51754189,	51751436	51751504	51751483	51751483	Nonsense_Mutation	C	T	p.Q91*
SKCM	TCGA-FW-A3R5-06	CEACAM21	ENST00000482870.2,ENST00000187608.9	chr19	42083551:42083911:42085705:42085981:42090702:42090796,	42085706	42085981	42085862	42085862	Nonsense_Mutation	G	A	p.W66*
SKCM	TCGA-FW-A3R5-06	CEACAM21	ENST00000457737.1	chr19	42083551:42083911:42085622:42085981:42090702:42090796,	42085623	42085981	42085862	42085862	Nonsense_Mutation	G	A	p.W66*
SKCM	TCGA-FW-A3R5-06	CD300A	ENST00000392625.3,ENST00000577511.1,ENST00000582319.1,ENST00000310828.5,ENST00000360141.3	chr17	72470670:72470824:72473574:72473669:72477427:72477465,	72473575	72473669	72473661	72473661	Nonsense_Mutation	G	A	p.W207*
SKCM	TCGA-FW-A3R5-06	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176304192:176304280:176304535:176304704:176304894:176305128,	176304536	176304704	176304662	176304662	Nonsense_Mutation	G	A	p.W531*
SKCM	TCGA-FW-A3R5-06	MCCC1	ENST00000495767.1,ENST00000497959.1,ENST00000497830.1,ENST00000265594.4,ENST00000539926.1,ENST00000492597.1,ENST00000476176.1	chr3	182759354:182759538:182763200:182763328:182769946:182770028,	182763201	182763328	182763211	182763211	Nonsense_Mutation	C	T	p.W249*
SKCM	TCGA-FW-A3R5-06	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185226344:185226665:185229311:185229485:185232197:185232309,	185229312	185229485	185229469	185229469	Nonsense_Mutation	G	A	p.Q371*
SKCM	TCGA-FW-A3R5-06	TREM2	ENST00000373122.4	chr6	41126244:41126518:41126610:41126844:41127529:41127620,	41126611	41126844	41126689	41126689	Nonsense_Mutation	C	T	p.W213*
SKCM	TCGA-FW-A3R5-06	TREM2	ENST00000373113.3	chr6	41126244:41126518:41126610:41126804:41127529:41127620,	41126611	41126804	41126689	41126689	Nonsense_Mutation	C	T	p.W213*
SKCM	TCGA-FW-A3R5-06	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205562	236205562	Nonsense_Mutation	C	T	p.W261*
SKCM	TCGA-FW-A3R5-06	MTMR11	ENST00000482025.1,ENST00000492824.1,ENST00000369140.3,ENST00000406732.3,ENST00000493562.1,ENST00000439741.2	chr1	149904155:149904222:149905298:149905423:149905502:149905591,	149905299	149905423	149905338	149905338	Nonsense_Mutation	G	A	p.Q316*
SKCM	TCGA-FW-A3R5-06	EPC2	ENST00000258484.6,ENST00000397424.2	chr2	149501190:149501336:149511495:149511702:149519350:149519378,	149511496	149511702	149511697	149511697	Nonsense_Mutation	C	T	p.R221*
SKCM	TCGA-FW-A3R5-06	GPN3	ENST00000550228.1	chr12	110893642:110893735:110895314:110895439:110897499:110897667,110891616:110891676:110895314:110895439:110897499:110897667,	110895315	110895439	110895368	110895368	Nonsense_Mutation	G	A	p.R172*
SKCM	TCGA-FW-A3R5-06	TIMD4	ENST00000274532.2,ENST00000407087.3	chr5	156376661:156376742:156378522:156378801:156381425:156381767,	156378523	156378801	156378652	156378652	Nonsense_Mutation	G	A	p.Q184*
SKCM	TCGA-FW-A3R5-06	PLA2R1	ENST00000283243.7,ENST00000392771.1	chr2	160843666:160843869:160862162:160862332:160869773:160869886,	160862163	160862332	160862250	160862250	Nonsense_Mutation	G	A	p.Q583*
SKCM	TCGA-FW-A3R5-06	CHAF1A	ENST00000301280.5	chr19	4431948:4432204:4433066:4433536:4442241:4442338,	4433067	4433536	4433534	4433534	Nonsense_Mutation	C	T	p.Q891*
SKCM	TCGA-FW-A3R5-06	NUP54	ENST00000264883.3,ENST00000514987.1,ENST00000342467.6	chr4	77053675:77053872:77055327:77055515:77065301:77065445,77053675:77053872:77055327:77055515:77057338:77057565,	77055328	77055515	77055431	77055431	Nonsense_Mutation	G	A	p.R203*
SKCM	TCGA-FW-A3R5-06	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	34101613:34101659:34118468:34118798:34125367:34125704,	34118469	34118798	34118537	34118537	Nonsense_Mutation	C	T	p.Q383*
SKCM	TCGA-FW-A3R5-06	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507007	18507007	Nonsense_Mutation	C	T	p.W256*
SKCM	TCGA-FW-A3R5-06	SLC6A4	ENST00000401766.2,ENST00000394821.2,ENST00000261707.3	chr17	28530189:28530357:28534749:28534850:28537532:28537664,28530189:28530357:28534749:28534850:28536160:28536260,	28534750	28534850	28534796	28534796	Nonsense_Mutation	C	T	p.W535*
SKCM	TCGA-FW-A3R5-06	UBA7	ENST00000333486.3,ENST00000460516.1	chr3	49848184:49848265:49848416:49848524:49848705:49848888,	49848417	49848524	49848490	49848490	Nonsense_Mutation	C	T	p.W386*
SKCM	TCGA-FW-A3R5-06	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2	chr7	101559394:101559505:101671377:101671425:101713618:101713697,	101671378	101671425	101671417	101671417	Nonsense_Mutation	C	T	p.Q72*
SKCM	TCGA-FW-A3R5-06	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1	chr5	33463857:33463930:33466975:33467090:33467664:33467943,	33466976	33467090	33467054	33467054	Nonsense_Mutation	C	T	p.R663*
SKCM	TCGA-FW-A3R5-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897018	36897018	Nonsense_Mutation	G	A	p.Q1355*
SKCM	TCGA-FW-A3R5-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36898763	36898763	Nonsense_Mutation	C	T	p.W773*
SKCM	TCGA-EE-A2MG-06	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21555919:21556060:21581734:21581928:21592309:21592486,	21581735	21581928	21581772	21581772	Nonsense_Mutation	G	A	p.W636*
SKCM	TCGA-EE-A17Y-06	AGFG1	ENST00000409315.1,ENST00000409171.1,ENST00000373671.3,ENST00000409979.2,ENST00000310078.8	chr2	228401340:228401420:228401616:228401709:228416674:228416833,	228401617	228401709	228401685	228401685	Nonsense_Mutation	C	T	p.Q452*
SKCM	TCGA-D3-A1Q4-06	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890981	890981	Nonsense_Mutation	G	A	p.Q149*
SKCM	TCGA-D3-A1Q4-06	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113169591	113169591	Nonsense_Mutation	C	T	p.W2763*
SKCM	TCGA-D3-A1Q4-06	ROCK1	ENST00000399799.2	chr18	18572791:18572898:18586311:18586558:18586659:18586751,	18586312	18586558	18586524	18586524	Nonsense_Mutation	G	T	p.S558*
SKCM	TCGA-D3-A1Q4-06	PLA2G4A	ENST00000367466.3	chr1	186880379:186880521:186901894:186902031:186908139:186908362,	186901895	186902031	186901934	186901934	Nonsense_Mutation	C	T	p.R200*
SKCM	TCGA-D3-A1Q4-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-D3-A1Q4-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-WE-A8K4-01	DISP2	ENST00000267889.3	chr15	40657347:40657475:40657828:40657926:40659258:40663257,	40657829	40657926	40657880	40657880	Nonsense_Mutation	G	A	p.W300*
SKCM	TCGA-WE-A8K4-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66136132:66136198:66188492:66188739:66190864:66191041,	66188493	66188739	66188516	66188516	Nonsense_Mutation	C	T	p.Q287*
SKCM	TCGA-WE-A8K4-01	TF	ENST00000494430.1	chr3	133472438:133472547:133473346:133473515:133474206:133474258,	133473347	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132*
SKCM	TCGA-WE-A8K4-01	TF	ENST00000493011.1,ENST00000482271.1,ENST00000264998.3,ENST00000402696.3	chr3	133472438:133472547:133473338:133473515:133474206:133474258,	133473339	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132*
SKCM	TCGA-WE-A8K4-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717505	73717505	Nonsense_Mutation	C	T	p.Q2806*
SKCM	TCGA-WE-A8K4-01	ZNF512	ENST00000379717.1,ENST00000416005.2,ENST00000355467.4,ENST00000556601.1,ENST00000413371.2	chr2	27826006:27826174:27830711:27830906:27838034:27838136,	27830712	27830906	27830790	27830790	Nonsense_Mutation	C	T	p.Q339*
SKCM	TCGA-WE-A8K4-01	ENAH	ENST00000284563.6,ENST00000483952.1,ENST00000366843.2	chr1	225686048:225686106:225688693:225688772:225695652:225695719,	225688694	225688772	225688729	225688729	Nonsense_Mutation	G	A	p.Q549*
SKCM	TCGA-WE-A8K4-01	NXN	ENST00000571684.1,ENST00000538650.1	chr17	704027:704371:706921:707046:722678:722785,	706922	707046	706987	706987	Nonsense_Mutation	T	A	p.K354*
SKCM	TCGA-WE-A8K4-01	RHOA	ENST00000418115.1	chr3	49397554:49397815:49399928:49400059:49412866:49413024,49397554:49397815:49399928:49400059:49405860:49405874,	49399929	49400059	49400040	49400040	Nonsense_Mutation	C	T	p.W99*
SKCM	TCGA-WE-A8K4-01	GCNT2	ENST00000495262.1	chr6	10527706:10527893:10528863:10530069:10621583:10621655,	10528864	10530069	10529873	10529873	Nonsense_Mutation	C	A	p.Y243*
SKCM	TCGA-WE-A8K4-01	ADM	ENST00000524948.1,ENST00000526492.1,ENST00000525063.1	chr11	10326634:10326776:10327226:10327345:10327495:10327645,	10327227	10327345	10327277	10327277	Nonsense_Mutation	C	A	p.Y10*
SKCM	TCGA-WE-A8K4-01	HLA-DRA	ENST00000395388.2	chr6	32410227:32410470:32410961:32411243:32411532:32411698,	32410962	32411243	32411075	32411075	Nonsense_Mutation	C	T	p.R148*
SKCM	TCGA-WE-A8K4-01	HLA-DRA	ENST00000374982.5	chr6	32410227:32410470:32411036:32411243:32411532:32411698,	32411037	32411243	32411075	32411075	Nonsense_Mutation	C	T	p.R148*
SKCM	TCGA-ER-A19W-06	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051720	96051720	Nonsense_Mutation	C	T	p.Q1599*
SKCM	TCGA-ER-A19W-06	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000505747.1	chr2	39996040:39996233:39996849:39997259:39998644:39998780,39995563:39995641:39996849:39997259:39998644:39998780,	39996850	39997259	39997187	39997187	Nonsense_Mutation	C	T	p.W112*
SKCM	TCGA-ER-A19W-06	THUMPD2	ENST00000530522.1	chr2	39995563:39995641:39996897:39997259:39998654:39998780,	39996898	39997259	39997187	39997187	Nonsense_Mutation	C	T	p.W112*
SKCM	TCGA-ER-A19W-06	PIP5K1B	ENST00000478500.1,ENST00000541509.1,ENST00000440050.1,ENST00000437200.1,ENST00000265382.3	chr9	71478752:71478883:71491592:71491710:71503896:71504049,	71491593	71491710	71491666	71491666	Nonsense_Mutation	C	T	p.R92*
SKCM	TCGA-ER-A19W-06	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71576658	71576658	Nonsense_Mutation	C	T	p.Q192*
SKCM	TCGA-ER-A19W-06	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71576658	71576658	Nonsense_Mutation	C	T	p.Q192*
SKCM	TCGA-ER-A19W-06	PTPRF	ENST00000422171.2,ENST00000414879.1	chr1	44058127:44058272:44064390:44064584:44069086:44069198,	44064391	44064584	44064457	44064457	Nonsense_Mutation	G	A	p.W729*
SKCM	TCGA-ER-A19W-06	ITLN1	ENST00000326245.3	chr1	160850377:160850498:160850943:160851102:160851746:160851772,	160850944	160851102	160851026	160851026	Nonsense_Mutation	C	T	p.W161*
SKCM	TCGA-D3-A2JP-06	PGM5	ENST00000396396.1,ENST00000396392.1,ENST00000604870.2	chr9	70993114:70993277:70999313:70999460:71002378:71002504,	70999314	70999460	70999394	70999394	Nonsense_Mutation	C	T	p.R169*
SKCM	TCGA-D3-A2JP-06	IQCA1	ENST00000309507.5,ENST00000409907.3,ENST00000418802.1,ENST00000465621.1,ENST00000254653.5	chr2	237300971:237300993:237308055:237308131:237327791:237327914,	237308056	237308131	237308114	237308114	Nonsense_Mutation	C	T	p.W384*
SKCM	TCGA-D3-A2JP-06	DIS3L2	ENST00000360410.4	chr2	232995328:232995429:233001181:233001433:233028172:233028230,	233001182	233001433	233001212	233001212	Nonsense_Mutation	C	T	p.R245*
SKCM	TCGA-D3-A2JP-06	DIS3L2	ENST00000433430.1,ENST00000325385.7,ENST00000409307.1,ENST00000390005.5,ENST00000273009.6	chr2	232995328:232995429:233001181:233001429:233028168:233028342,	233001182	233001429	233001212	233001212	Nonsense_Mutation	C	T	p.R245*
SKCM	TCGA-BF-A3DL-01	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828152	121828152	Nonsense_Mutation	G	A	p.W248*
SKCM	TCGA-BF-A3DL-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345787	122345787	Nonsense_Mutation	C	T	p.Q449*
SKCM	TCGA-BF-A3DL-01	MAPKAP1	ENST00000473837.1,ENST00000373511.2,ENST00000373503.3,ENST00000394063.1,ENST00000265960.3,ENST00000373498.1	chr9	128246721:128246862:128305337:128305447:128321911:128322088,128268588:128268696:128305337:128305447:128321911:128322088,	128305338	128305447	128305419	128305419	Nonsense_Mutation	G	A	p.Q293*
SKCM	TCGA-BF-A3DL-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
SKCM	TCGA-BF-A3DL-01	DOCK2	ENST00000256935.8,ENST00000524185.1	chr5	169129306:169129431:169135172:169135271:169138938:169139011,	169135173	169135271	169135259	169135259	Nonsense_Mutation	G	A	p.W17*
SKCM	TCGA-BF-A3DL-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70517037:70517167:70533269:70533486:70536176:70536432,	70533270	70533486	70533306	70533306	Nonsense_Mutation	C	T	p.R472*
SKCM	TCGA-BF-A3DL-01	L3MBTL1	ENST00000427442.2,ENST00000422861.1,ENST00000418998.1,ENST00000444063.1,ENST00000373133.1,ENST00000373134.1,ENST00000373135.3	chr20	42164736:42164934:42165048:42165098:42168790:42168948,	42165049	42165098	42165071	42165071	Nonsense_Mutation	C	T	p.R626*
SKCM	TCGA-ER-A198-06	EML5	ENST00000553526.1,ENST00000553281.1,ENST00000380664.5,ENST00000352093.5,ENST00000555823.1,ENST00000554922.1	chr14	89088947:89089062:89091313:89091471:89093181:89093244,	89091314	89091471	89091324	89091324	Nonsense_Mutation	T	A	p.K1630*
SKCM	TCGA-ER-A198-06	CMAS	ENST00000229329.2	chr12	22213765:22213860:22215214:22215368:22218054:22218597,22214214:22214386:22215214:22215368:22218054:22218597,	22215215	22215368	22215349	22215349	Nonsense_Mutation	G	A	p.W365*
SKCM	TCGA-ER-A198-06	PIH1D1	ENST00000600875.1,ENST00000596916.1,ENST00000597577.1,ENST00000601807.1,ENST00000262265.5,ENST00000596049.1,ENST00000601053.1	chr19	49950280:49950356:49950594:49950724:49951083:49951165,	49950595	49950724	49950644	49950644	Nonsense_Mutation	G	A	p.Q188*
SKCM	TCGA-ER-A198-06	PIH1D1	ENST00000596651.1,ENST00000593629.1	chr19	49950280:49950356:49950594:49950677:49951083:49951165,	49950595	49950677	49950644	49950644	Nonsense_Mutation	G	A	p.Q188*
SKCM	TCGA-ER-A198-06	PIH1D1	ENST00000598889.1,ENST00000598175.1	chr19	49950280:49950356:49950594:49950674:49951083:49951165,	49950595	49950674	49950644	49950644	Nonsense_Mutation	G	A	p.Q188*
SKCM	TCGA-ER-A198-06	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982969	40982969	Nonsense_Mutation	C	T	p.Q30*
SKCM	TCGA-ER-A198-06	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157133	145157133	Nonsense_Mutation	G	A	p.Q541*
SKCM	TCGA-ER-A198-06	TFAP4	ENST00000572393.1,ENST00000575320.1,ENST00000573476.1,ENST00000204517.6	chr16	4311779:4311950:4312324:4312423:4312536:4312702,	4312325	4312423	4312327	4312327	Nonsense_Mutation	G	A	p.Q118*
SKCM	TCGA-ER-A198-06	TM7SF2	ENST00000527968.1	chr11	64882384:64882553:64882785:64882866:64882947:64882986,64882384:64882553:64882785:64882866:64883364:64883429,	64882786	64882866	64882836	64882836	Nonsense_Mutation	C	T	p.R315*
SKCM	TCGA-ER-A198-06	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964759	100964759	Nonsense_Mutation	C	T	p.R566*
SKCM	TCGA-ER-A198-06	SCG3	ENST00000542355.2,ENST00000220478.3	chr15	51975275:51975321:51975415:51975631:51980456:51980599,	51975416	51975631	51975628	51975628	Nonsense_Mutation	C	T	p.Q132*
SKCM	TCGA-ER-A42H-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715411	68715411	Nonsense_Mutation	G	T	p.E67*
SKCM	TCGA-ER-A42H-01	UBAP2	ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33943417:33943587:33944362:33944637:33948371:33948585,	33944363	33944637	33944587	33944587	Nonsense_Mutation	G	A	p.R441*
SKCM	TCGA-FR-A728-01	NPM3	ENST00000474993.1,ENST00000468544.1,ENST00000370110.5	chr10	103541483:103541611:103542014:103542108:103542234:103542354,	103542015	103542108	103542084	103542084	Nonsense_Mutation	G	A	p.Q117*
SKCM	TCGA-FR-A728-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141721385:141721537:141722067:141722239:141724849:141724949,	141722068	141722239	141722126	141722126	Nonsense_Mutation	C	T	p.R257*
SKCM	TCGA-FR-A728-01	IL1R2	ENST00000457817.1,ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102626183:102626288:102632332:102632513:102636099:102636274,	102632333	102632513	102632507	102632507	Nonsense_Mutation	G	A	p.W169*
SKCM	TCGA-GN-A9SD-06	GRIK2	ENST00000318991.6,ENST00000369134.4,ENST00000413795.1,ENST00000421544.1,ENST00000369138.1	chr6	102337514:102337738:102372475:102372594:102376289:102376507,	102372476	102372594	102372576	102372576	Nonsense_Mutation	G	T	p.G617*
SKCM	TCGA-GN-A9SD-06	MLIP	ENST00000509997.1,ENST00000370876.2,ENST00000358276.5	chr6	54025164:54025230:54034325:54034370:54054667:54054712,53989270:53989663:54034325:54034370:54054667:54054712,	54034326	54034370	54034356	54034356	Nonsense_Mutation	C	T	p.R833*
SKCM	TCGA-GF-A4EO-06	TM7SF3	ENST00000343028.4,ENST00000543882.1	chr12	27143382:27143560:27148169:27148341:27167010:27167144,27143382:27143560:27148169:27148341:27149674:27149718,	27148170	27148341	27148193	27148193	Nonsense_Mutation	G	A	p.Q223*
SKCM	TCGA-GF-A4EO-06	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180905209	180905209	Nonsense_Mutation	C	T	p.Q722*
SKCM	TCGA-GF-A4EO-06	TERT	ENST00000460137.2,ENST00000310581.5,ENST00000334602.6,ENST00000296820.5,ENST00000484238.2	chr5	1253842:1253946:1254482:1254620:1255401:1255526,	1254483	1254620	1254494	1254494	Nonsense_Mutation	G	C	p.S1095*
SKCM	TCGA-GF-A4EO-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971153	21971153	Nonsense_Mutation	C	A	p.E69*
SKCM	TCGA-GF-A4EO-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971153	21971153	Nonsense_Mutation	C	A	p.E69*
SKCM	TCGA-W3-A824-06	PARD3	ENST00000374789.3,ENST00000545693.1,ENST00000545260.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34420390:34420511:34558584:34558827:34606034:34606260,34420390:34420511:34558584:34558827:34573062:34573173,	34558585	34558827	34558811	34558811	Nonsense_Mutation	G	A	p.R1068*
SKCM	TCGA-W3-A824-06	DLL4	ENST00000249749.5	chr15	41222822:41222880:41223700:41223964:41224368:41224429,	41223701	41223964	41223942	41223942	Nonsense_Mutation	G	A	p.W212*
SKCM	TCGA-W3-A824-06	CNN2	ENST00000606983.1,ENST00000565096.2,ENST00000562958.2,ENST00000562075.2,ENST00000348419.3,ENST00000569352.2	chr19	1026689:1026723:1031069:1031191:1032390:1032457,	1031070	1031191	1031117	1031117	Nonsense_Mutation	G	A	p.W37*
SKCM	TCGA-W3-A824-06	ADAM11	ENST00000535346.1,ENST00000587773.1,ENST00000200557.6,ENST00000355638.4	chr17	42855319:42855434:42855519:42855610:42856589:42856607,	42855520	42855610	42855602	42855602	Nonsense_Mutation	G	A	p.W756*
SKCM	TCGA-W3-A824-06	ADAMTSL1	ENST00000380559.3,ENST00000380548.4,ENST00000380545.5	chr9	18889565:18889746:18892386:18892594:18905779:18905889,	18892387	18892594	18892414	18892414	Nonsense_Mutation	T	A	p.C1557*
SKCM	TCGA-W3-A824-06	MRVI1	ENST00000527509.2,ENST00000531107.1,ENST00000421747.1,ENST00000534266.2,ENST00000552103.1,ENST00000424001.1,ENST00000545852.1,ENST00000529448.1,ENST00000547195.1,ENST00000558540.1,ENST00000436272.1,ENST00000423302.2	chr11	10645324:10645403:10647512:10648130:10649262:10649304,	10647513	10648130	10647696	10647696	Nonsense_Mutation	C	T	p.W304*
SKCM	TCGA-W3-A824-06	CUBN	ENST00000377833.4	chr10	16882883:16883046:16893233:16893442:16911634:16911852,	16893234	16893442	16893336	16893336	Nonsense_Mutation	C	T	p.W3187*
SKCM	TCGA-W3-A824-06	ELSPBP1	ENST00000339841.2	chr19	48511907:48511994:48519149:48519296:48522975:48523134,48517427:48517565:48519149:48519296:48522975:48523134,	48519150	48519296	48519182	48519182	Nonsense_Mutation	C	T	p.R81*
SKCM	TCGA-W3-A824-06	PLCH2	ENST00000449969.1,ENST00000378486.3,ENST00000343889.4,ENST00000378488.3,ENST00000278878.6,ENST00000419816.2	chr1	2418611:2418815:2419036:2419157:2420645:2420817,	2419037	2419157	2419046	2419046	Nonsense_Mutation	G	A	p.W348*
SKCM	TCGA-W3-A824-06	DMGDH	ENST00000540686.1,ENST00000517853.1	chr5	78340126:78340375:78359435:78359610:78365342:78365449,78329061:78329231:78359435:78359610:78365342:78365449,	78359436	78359610	78359490	78359490	Nonsense_Mutation	T	A	p.R30*
SKCM	TCGA-W3-A824-06	ABCB10	ENST00000344517.4,ENST00000486755.1	chr1	229661808:229661863:229662975:229663055:229665945:229666155,	229662976	229663055	229663006	229663006	Nonsense_Mutation	C	T	p.W565*
SKCM	TCGA-W3-A824-06	FSD2	ENST00000334574.8,ENST00000541889.1	chr15	83448996:83449019:83451546:83451777:83455262:83455358,	83451547	83451777	83451549	83451549	Nonsense_Mutation	T	A	p.K322*
SKCM	TCGA-W3-A824-06	AZIN1	ENST00000521536.2,ENST00000347770.4,ENST00000337198.5	chr8	103846893:103846975:103848483:103848618:103850971:103851144,	103848484	103848618	103848500	103848500	Nonsense_Mutation	G	A	p.Q190*
SKCM	TCGA-W3-A824-06	LDB2	ENST00000506732.1,ENST00000502640.1,ENST00000441778.2,ENST00000304523.5	chr4	16597325:16597498:16760780:16760883:16899976:16900001,	16760781	16760883	16760863	16760863	Nonsense_Mutation	C	T	p.W51*
SKCM	TCGA-W3-A824-06	ARSD	ENST00000381154.1	chrX	2826761:2826883:2827857:2828020:2828699:2828834,	2827858	2828020	2827940	2827940	Nonsense_Mutation	G	A	p.R406*
SKCM	TCGA-W3-A824-06	UNC13D	ENST00000412096.2,ENST00000207549.4,ENST00000591563.1	chr17	73830155:73830224:73830405:73830612:73830698:73830797,	73830406	73830612	73830542	73830542	Nonsense_Mutation	C	T	p.W721*
SKCM	TCGA-W3-A824-06	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195517855	195517855	Nonsense_Mutation	C	T	p.W199*
SKCM	TCGA-W3-A824-06	TNFRSF11B	ENST00000521597.1,ENST00000297350.4	chr8	119936713:119937001:119938732:119938957:119940976:119941168,	119938733	119938957	119938772	119938772	Nonsense_Mutation	G	A	p.Q260*
SKCM	TCGA-W3-A824-06	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113460526:113460607:113464932:113465040:113470396:113470525,	113464933	113465040	113465029	113465029	Nonsense_Mutation	C	T	p.R144*
SKCM	TCGA-W3-A824-06	VPS8	ENST00000436792.2,ENST00000458721.1,ENST00000287546.4,ENST00000437079.3	chr3	184587310:184587316:184588503:184588593:184603897:184603944,	184588504	184588593	184588534	184588534	Nonsense_Mutation	C	T	p.R559*
SKCM	TCGA-W3-A824-06	CCDC170	ENST00000239374.7,ENST00000367290.5	chr6	151869438:151869624:151894308:151894626:151907023:151907224,	151894309	151894626	151894591	151894591	Nonsense_Mutation	C	T	p.R353*
SKCM	TCGA-W3-A824-06	ZNF341	ENST00000497876.1,ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32346521:32346612:32349667:32349861:32354656:32354847,	32349668	32349861	32349795	32349795	Nonsense_Mutation	C	T	p.R386*
SKCM	TCGA-EB-A85J-01	CHI3L1	ENST00000255409.3	chr1	203152768:203152919:203153703:203153760:203154311:203154398,	203153704	203153760	203153721	203153721	Nonsense_Mutation	C	T	p.W99*
SKCM	TCGA-EB-A85J-01	ARAP2	ENST00000508066.1,ENST00000303965.4	chr4	36212011:36212365:36214017:36214109:36214864:36214941,	36214018	36214109	36214106	36214106	Nonsense_Mutation	G	A	p.R349*
SKCM	TCGA-EB-A85J-01	CHRNA3	ENST00000348639.3,ENST00000559658.1,ENST00000326828.5	chr15	78894117:78894606:78909365:78909475:78910958:78911003,	78909366	78909475	78909471	78909471	Nonsense_Mutation	C	T	p.W91*
SKCM	TCGA-EB-A85J-01	KMT2E	ENST00000334914.7,ENST00000474203.1,ENST00000495267.1,ENST00000257745.4,ENST00000334884.5,ENST00000482560.2,ENST00000476671.1,ENST00000334877.4,ENST00000311117.3	chr7	104681321:104681470:104702610:104702725:104703797:104703824,	104702611	104702725	104702645	104702645	Nonsense_Mutation	G	T	p.E36*
SKCM	TCGA-EB-A85J-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100830940:100831116:100831639:100831810:100832148:100832350,	100831640	100831810	100831734	100831734	Nonsense_Mutation	C	T	p.Q2931*
SKCM	TCGA-EB-A41A-01	ITGA8	ENST00000378076.3	chr10	15639205:15639298:15646206:15646354:15647722:15647790,	15646207	15646354	15646290	15646290	Nonsense_Mutation	C	A	p.E679*
SKCM	TCGA-EB-A41A-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203550	91203550	Nonsense_Mutation	C	T	p.W59*
SKCM	TCGA-EB-A41A-01	CFLAR	ENST00000309955.3,ENST00000439154.2,ENST00000494258.1,ENST00000461422.1,ENST00000341582.6,ENST00000440180.1,ENST00000423241.2,ENST00000342795.5,ENST00000340870.5,ENST00000479953.2,ENST00000462763.1,ENST00000355558.4,ENST00000457277.1,ENST00000443227.1,ENST00000341222.6,ENST00000470178.2	chr2	201997752:201997857:202000694:202000830:202005079:202005162,	202000695	202000830	202000749	202000749	Nonsense_Mutation	C	T	p.Q148*
SKCM	TCGA-EB-A41A-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20854605:20854782:20856063:20856222:20857396:20857456,	20856064	20856222	20856071	20856071	Nonsense_Mutation	G	A	p.Q893*
SKCM	TCGA-EB-A41A-01	QRICH1	ENST00000357496.2,ENST00000424300.1,ENST00000395443.2	chr3	49084501:49084679:49094294:49095323:49114141:49114471,	49094295	49095323	49095047	49095047	Nonsense_Mutation	G	A	p.Q196*
SKCM	TCGA-EB-A41A-01	SLC41A2	ENST00000258538.3	chr12	105255068:105255148:105260209:105260357:105280070:105280217,	105260210	105260357	105260242	105260242	Nonsense_Mutation	C	T	p.W381*
SKCM	TCGA-EB-A41A-01	CYP4F2	ENST00000221700.6,ENST00000608168.1	chr19	16006315:16006460:16008223:16008422:16008835:16008881,	16008224	16008422	16008305	16008305	Nonsense_Mutation	G	C	p.Y39*
SKCM	TCGA-EB-A41A-01	PPIP5K1	ENST00000381879.4,ENST00000396923.3,ENST00000381885.1,ENST00000334933.4,ENST00000360301.4,ENST00000420765.1	chr15	43827393:43827674:43831667:43831781:43850992:43851130,	43831668	43831781	43831670	43831670	Nonsense_Mutation	C	T	p.W1166*
SKCM	TCGA-EB-A41A-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120155	12120155	Nonsense_Mutation	G	T	p.E43*
SKCM	TCGA-EB-A41A-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70515426:70515555:70515834:70515891:70517037:70517167,	70515835	70515891	70515839	70515839	Nonsense_Mutation	C	T	p.R399*
SKCM	TCGA-EB-A41A-01	PTPN2	ENST00000309660.5,ENST00000591115.1,ENST00000353319.4,ENST00000327283.3,ENST00000592776.1	chr18	12836822:12836890:12859162:12859253:12884071:12884197,	12859163	12859253	12859247	12859247	Nonsense_Mutation	G	A	p.R26*
SKCM	TCGA-EB-A41A-01	SLC22A10	ENST00000532724.1,ENST00000526800.1	chr11	63057779:63058039:63059011:63059115:63064774:63064929,63057875:63058039:63059011:63059115:63066391:63066515,	63059012	63059115	63059014	63059014	Nonsense_Mutation	G	A	p.W135*
SKCM	TCGA-EB-A41A-01	CCDC102B	ENST00000360242.5,ENST00000358653.5	chr18	66465316:66465418:66503985:66504606:66505942:66506163,	66503986	66504606	66504328	66504328	Nonsense_Mutation	C	T	p.R110*
SKCM	TCGA-EB-A41A-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672205	77672205	Nonsense_Mutation	G	A	p.R513*
SKCM	TCGA-EB-A41A-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47808656:47808799:47809113:47809346:47810584:47810747,	47809114	47809346	47809287	47809287	Nonsense_Mutation	C	T	p.Q1261*
SKCM	TCGA-EB-A42Z-01	AKR1C2	ENST00000460124.1	chr10	5040816:5040939:5041391:5042858:5043705:5043873,	5041392	5042858	5042629	5042629	Nonsense_Mutation	C	T	p.W131*
SKCM	TCGA-BF-A5ES-01	THBS2	ENST00000366787.3	chr6	169646291:169646376:169648511:169649068:169650827:169650901,	169648512	169649068	169648674	169648674	Nonsense_Mutation	C	T	p.W149*
SKCM	TCGA-BF-A5ES-01	EIF2B3	ENST00000360403.2	chr1	45316449:45316675:45323375:45323479:45340349:45340498,	45323376	45323479	45323394	45323394	Nonsense_Mutation	G	A	p.Q430*
SKCM	TCGA-BF-A5ES-01	SLC25A21	ENST00000331299.5,ENST00000555449.1	chr14	37153032:37153085:37153948:37154130:37180522:37180687,	37153949	37154130	37153959	37153959	Nonsense_Mutation	G	A	p.Q259*
SKCM	TCGA-BF-A5ES-01	UNC5B	ENST00000373192.4,ENST00000335350.6	chr10	73055567:73055717:73056334:73056499:73057665:73057847,	73056335	73056499	73056476	73056476	Nonsense_Mutation	C	T	p.Q823*
SKCM	TCGA-BF-A5ES-01	HDAC3	ENST00000519474.1,ENST00000523088.1,ENST00000459727.1,ENST00000467533.1,ENST00000305264.3,ENST00000469550.2	chr5	141007459:141007524:141007680:141007754:141008125:141008129,	141007681	141007754	141007683	141007683	Nonsense_Mutation	G	A	p.Q255*
SKCM	TCGA-BF-A5ES-01	OPHN1	ENST00000355520.5,ENST00000484842.1,ENST00000540071.1	chrX	67292993:67293141:67316711:67316871:67331695:67331801,	67316712	67316871	67316753	67316753	Nonsense_Mutation	G	A	p.Q549*
SKCM	TCGA-EE-A29D-06	ESPL1	ENST00000549154.1,ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53685767:53685872:53686061:53686177:53686357:53686441,	53686062	53686177	53686161	53686161	Nonsense_Mutation	C	T	p.R1966*
SKCM	TCGA-EE-A29D-06	KIAA1211L	ENST00000462314.1	chr2	99443450:99443632:99448810:99448975:99454581:99454750,	99448811	99448975	99448966	99448966	Nonsense_Mutation	G	A	p.Q129*
SKCM	TCGA-EE-A29D-06	THOC6	ENST00000575576.1,ENST00000574549.1,ENST00000326266.8	chr16	3077170:3077281:3077366:3077501:3077577:3077723,	3077367	3077501	3077382	3077382	Nonsense_Mutation	C	T	p.Q276*
SKCM	TCGA-EE-A29D-06	METTL25	ENST00000248306.3,ENST00000548432.1	chr12	82850505:82850599:82870422:82870497:82871059:82871131,	82870423	82870497	82870468	82870468	Nonsense_Mutation	C	T	p.R540*
SKCM	TCGA-EE-A29D-06	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507177	74507177	Nonsense_Mutation	G	A	p.Q480*
SKCM	TCGA-EE-A29D-06	ACSL3	ENST00000392066.3	chr2	223752547:223752606:223773450:223773868:223781036:223781214,	223773451	223773868	223773638	223773638	Nonsense_Mutation	G	T	p.E50*
SKCM	TCGA-EE-A29D-06	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61833981	61833981	Nonsense_Mutation	G	A	p.Q2220*
SKCM	TCGA-EE-A29D-06	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36899454	36899454	Nonsense_Mutation	G	A	p.Q543*
SKCM	TCGA-EE-A29D-06	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606592	179606592	Nonsense_Mutation	G	A	p.Q3790*
SKCM	TCGA-EE-A29D-06	LUC7L	ENST00000397783.1,ENST00000426094.1,ENST00000293872.8,ENST00000337351.4,ENST00000419516.1,ENST00000418978.1,ENST00000397780.1,ENST00000495349.1,ENST00000490762.1,ENST00000464711.1,ENST00000430864.1	chr16	242925:243014:249060:249237:256002:256086,	249061	249237	249084	249084	Nonsense_Mutation	G	A	p.R222*
SKCM	TCGA-EE-A29D-06	FAM71F2	ENST00000474069.1,ENST00000434001.2,ENST00000378704.3,ENST00000480462.1	chr7	128315701:128315913:128317617:128317867:128320084:128320203,	128317618	128317867	128317745	128317745	Nonsense_Mutation	C	T	p.Q165*
SKCM	TCGA-EE-A29D-06	NAIP	ENST00000194097.4,ENST00000508426.2,ENST00000517649.1	chr5	70299602:70299684:70307101:70307201:70308174:70308745,	70307102	70307201	70307129	70307129	Nonsense_Mutation	C	T	p.W214*
SKCM	TCGA-EE-A29D-06	ATG9B	ENST00000494791.1,ENST00000466157.1,ENST00000473409.1,ENST00000377974.2,ENST00000605952.1,ENST00000486407.1,ENST00000444312.1,ENST00000605938.1,ENST00000473134.1	chr7	150718274:150718416:150720131:150720293:150720531:150720596,	150720132	150720293	150720253	150720253	Nonsense_Mutation	G	A	p.R234*
SKCM	TCGA-EE-A29D-06	FBXW11	ENST00000296933.6,ENST00000523843.1,ENST00000393802.2,ENST00000522376.1,ENST00000265094.5,ENST00000425623.2	chr5	171297751:171297862:171299875:171299994:171303288:171303295,	171299876	171299994	171299925	171299925	Nonsense_Mutation	G	A	p.Q397*
SKCM	TCGA-EE-A29D-06	FBRS	ENST00000356166.6,ENST00000287468.5,ENST00000395073.2	chr16	30676035:30676241:30676355:30676400:30676626:30676722,	30676356	30676400	30676392	30676392	Nonsense_Mutation	C	T	p.R534*
SKCM	TCGA-EE-A29D-06	TNRC6C	ENST00000301624.4,ENST00000541771.1,ENST00000588061.1	chr17	76089700:76089844:76094423:76094618:76098554:76098625,	76094424	76094618	76094577	76094577	Nonsense_Mutation	G	A	p.W1523*
SKCM	TCGA-EE-A29D-06	PLD3	ENST00000409735.4,ENST00000409587.1,ENST00000409281.1,ENST00000356508.5,ENST00000409419.1	chr19	40876016:40876144:40877579:40877780:40880387:40880527,	40877580	40877780	40877667	40877667	Nonsense_Mutation	C	T	p.Q256*
SKCM	TCGA-EE-A29D-06	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844719	123844719	Nonsense_Mutation	C	T	p.Q902*
SKCM	TCGA-EE-A29D-06	SPATS2	ENST00000552655.1,ENST00000549412.1,ENST00000552557.1,ENST00000321898.6,ENST00000553127.1,ENST00000552918.1	chr12	49884464:49884514:49888523:49888785:49890615:49890672,	49888524	49888785	49888605	49888605	Nonsense_Mutation	C	T	p.Q116*
SKCM	TCGA-EE-A29D-06	PLEKHS1	ENST00000369312.4	chr10	115515017:115515064:115526169:115526258:115526370:115526458,115515017:115515164:115526169:115526258:115526370:115526477,	115526170	115526258	115526241	115526241	Nonsense_Mutation	C	T	p.Q34*
SKCM	TCGA-EE-A29D-06	TRABD2A	ENST00000496500.1,ENST00000409520.2,ENST00000335459.5,ENST00000479944.1	chr2	85049065:85049224:85051076:85051328:85059178:85059269,	85051077	85051328	85051084	85051084	Nonsense_Mutation	C	A	p.E394*
SKCM	TCGA-EE-A29D-06	ATG2B	ENST00000359933.4	chr14	96798837:96798992:96800024:96800210:96800741:96800838,	96800025	96800210	96800166	96800166	Nonsense_Mutation	G	A	p.R356*
SKCM	TCGA-EE-A29D-06	RSF1	ENST00000308488.6,ENST00000528095.1,ENST00000534794.1	chr11	77451775:77451981:77458080:77458173:77475642:77475734,	77458081	77458173	77458147	77458147	Nonsense_Mutation	C	T	p.W102*
SKCM	TCGA-EE-A29D-06	RASGRP3	ENST00000437184.1,ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33745018:33745081:33745619:33745751:33747021:33747169,	33745620	33745751	33745625	33745625	Nonsense_Mutation	G	A	p.W81*
SKCM	TCGA-EE-A29D-06	SCFD2	ENST00000388940.4,ENST00000401642.3	chr4	54011499:54011749:54139992:54140168:54179802:54179930,	54139993	54140168	54139995	54139995	Nonsense_Mutation	G	A	p.Q437*
SKCM	TCGA-EE-A29D-06	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71576895	71576895	Nonsense_Mutation	C	T	p.Q271*
SKCM	TCGA-EE-A29D-06	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71576895	71576895	Nonsense_Mutation	C	T	p.Q271*
SKCM	TCGA-EE-A29D-06	ANP32A	ENST00000495420.1,ENST00000560303.1	chr15	69079751:69079874:69080108:69080258:69113036:69113207,	69080109	69080258	69080189	69080189	Nonsense_Mutation	C	A	p.E42*
SKCM	TCGA-EE-A29D-06	CA1	ENST00000520093.1,ENST00000523022.1,ENST00000517429.1	chr8	86250648:86250678:86253827:86253888:86290274:86290337,	86253828	86253888	86253848	86253848	Nonsense_Mutation	C	T	p.W6*
SKCM	TCGA-EE-A29D-06	NAALADL2	ENST00000454872.1	chr3	175455093:175455187:175473007:175473206:175520792:175523428,	175473008	175473206	175473076	175473076	Nonsense_Mutation	C	T	p.Q687*
SKCM	TCGA-EE-A29D-06	ICA1	ENST00000402384.3,ENST00000455539.1,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8178614:8178677:8181394:8181447:8183504:8183602,	8181395	8181447	8181422	8181422	Nonsense_Mutation	G	A	p.Q310*
SKCM	TCGA-EE-A29D-06	ATP2B2	ENST00000383800.4,ENST00000397077.1,ENST00000452124.1,ENST00000480680.2,ENST00000360273.2,ENST00000460129.1,ENST00000352432.4,ENST00000343816.4	chr3	10442636:10442762:10443774:10444032:10452301:10452359,	10443775	10444032	10443912	10443912	Nonsense_Mutation	C	T	p.W173*
SKCM	TCGA-EE-A29D-06	FBXO24	ENST00000465843.1,ENST00000360609.2	chr7	100187599:100187698:100187796:100187938:100189289:100189525,	100187797	100187938	100187894	100187894	Nonsense_Mutation	G	A	p.W79*
SKCM	TCGA-EE-A29D-06	FBXO24	ENST00000474649.1,ENST00000241071.6,ENST00000466053.1,ENST00000468962.1,ENST00000427939.2,ENST00000498195.1	chr7	100187599:100187698:100187796:100187980:100189289:100189469,	100187797	100187980	100187894	100187894	Nonsense_Mutation	G	A	p.W79*
SKCM	TCGA-EE-A29D-06	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525627	176525627	Nonsense_Mutation	C	T	p.R57*
SKCM	TCGA-EE-A29D-06	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438107	9438107	Nonsense_Mutation	C	T	p.Q1003*
SKCM	TCGA-OD-A75X-06	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160255339:160255405:160257109:160257175:160261359:160261421,	160257110	160257175	160257130	160257130	Nonsense_Mutation	G	A	p.R960*
SKCM	TCGA-OD-A75X-06	SLC35F2	ENST00000532513.2,ENST00000429869.1,ENST00000525071.1	chr11	107682392:107682520:107686515:107686691:107729383:107729493,	107686516	107686691	107686522	107686522	Nonsense_Mutation	G	A	p.R94*
SKCM	TCGA-OD-A75X-06	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000346544.3,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216249582:216249699:216251411:216251681:216252934:216253023,	216251412	216251681	216251618	216251618	Nonsense_Mutation	C	T	p.W1469*
SKCM	TCGA-OD-A75X-06	LDLRAD4	ENST00000399848.3,ENST00000361205.4,ENST00000587905.1,ENST00000359446.5	chr18	13278103:13278187:13387339:13387761:13438242:13438331,	13387340	13387761	13387740	13387740	Nonsense_Mutation	C	T	p.Q7*
SKCM	TCGA-OD-A75X-06	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170592400	170592400	Nonsense_Mutation	G	A	p.W292*
SKCM	TCGA-OD-A75X-06	CHRNA9	ENST00000310169.2	chr4	40337843:40337989:40339226:40339381:40350898:40351431,	40339227	40339381	40339308	40339308	Nonsense_Mutation	C	T	p.Q98*
SKCM	TCGA-OD-A75X-06	ABTB1	ENST00000491633.1,ENST00000475265.1,ENST00000232744.8,ENST00000479280.1,ENST00000393363.3,ENST00000475042.1,ENST00000453791.2,ENST00000468137.1,ENST00000467179.1,ENST00000483857.1	chr3	127394927:127394957:127395114:127395274:127395378:127395424,	127395115	127395274	127395238	127395238	Nonsense_Mutation	G	A	p.W6*
SKCM	TCGA-OD-A75X-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124262	12124262	Nonsense_Mutation	C	T	p.R1412*
SKCM	TCGA-OD-A75X-06	DDX3X	ENST00000441189.2,ENST00000399959.2,ENST00000478993.1,ENST00000542215.1	chrX	41196661:41196718:41198288:41198336:41200736:41200869,	41198289	41198336	41198333	41198333	Nonsense_Mutation	A	T	p.K50*
SKCM	TCGA-OD-A75X-06	FAF1	ENST00000396153.2,ENST00000494400.1,ENST00000371778.4	chr1	51050356:51050483:51061792:51061888:51121113:51121200,	51061793	51061888	51061849	51061849	Nonsense_Mutation	G	A	p.R262*
SKCM	TCGA-OD-A75X-06	CPEB1	ENST00000423133.2,ENST00000562019.1,ENST00000261723.6,ENST00000450751.2,ENST00000568757.1,ENST00000563800.1,ENST00000564522.1,ENST00000568128.1,ENST00000398591.2	chr15	83224619:83224872:83226509:83226736:83240093:83240282,	83226510	83226736	83226581	83226581	Nonsense_Mutation	G	A	p.R206*
SKCM	TCGA-OD-A75X-06	FAM13A	ENST00000264344.5,ENST00000502459.1	chr4	89726161:89726203:89772170:89772334:89827529:89827613,	89772171	89772334	89772259	89772259	Nonsense_Mutation	G	A	p.Q307*
SKCM	TCGA-OD-A75X-06	SLC26A3	ENST00000340010.5	chr7	107414364:107414598:107415221:107415317:107416896:107416989,	107415222	107415317	107415299	107415299	Nonsense_Mutation	G	A	p.R566*
SKCM	TCGA-OD-A75X-06	FSTL5	ENST00000427802.2	chr4	162402171:162402321:162421167:162421286:162459317:162459452,	162421168	162421286	162421170	162421170	Nonsense_Mutation	G	A	p.Q486*
SKCM	TCGA-OD-A75X-06	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166410:67166634:67167031:67167136:67168159:67168228,	67167032	67167136	67167056	67167056	Nonsense_Mutation	C	A	p.E167*
SKCM	TCGA-BF-A1PV-01	MAMDC2	ENST00000377182.4	chr9	72746434:72746528:72755060:72755204:72758469:72758735,	72755061	72755204	72755146	72755146	Nonsense_Mutation	G	A	p.W360*
SKCM	TCGA-BF-A1PV-01	NIN	ENST00000382041.3,ENST00000530997.2,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51192670:51192784:51196240:51196441:51202233:51202335,	51196241	51196441	51196294	51196294	Nonsense_Mutation	G	A	p.Q2009*
SKCM	TCGA-BF-A1PV-01	ZSCAN23	ENST00000289788.4	chr6	28403236:28403384:28403635:28404120:28411175:28411244,	28403636	28404120	28403731	28403731	Nonsense_Mutation	G	A	p.Q105*
SKCM	TCGA-FR-A3YN-06	HUS1	ENST00000258774.5,ENST00000458191.1,ENST00000432325.1,ENST00000436444.1	chr7	48004896:48005035:48007402:48007522:48008815:48008915,	48007403	48007522	48007430	48007430	Nonsense_Mutation	G	A	p.Q245*
SKCM	TCGA-FR-A3YN-06	IQCH	ENST00000358767.3,ENST00000335894.4,ENST00000360277.4,ENST00000514049.1,ENST00000546225.1	chr15	67692451:67692643:67709268:67709389:67713628:67713915,	67709269	67709389	67709357	67709357	Nonsense_Mutation	G	A	p.W729*
SKCM	TCGA-FR-A3YN-06	RTTN	ENST00000255674.6,ENST00000578780.1,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67672433:67672503:67673616:67673720:67684642:67684823,	67673617	67673720	67673641	67673641	Nonsense_Mutation	C	T	p.W2167*
SKCM	TCGA-FR-A3YN-06	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541328	187541328	Nonsense_Mutation	T	A	p.K2138*
SKCM	TCGA-FR-A3YN-06	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662995	40662995	Nonsense_Mutation	C	T	p.R921*
SKCM	TCGA-FR-A3YN-06	GEMIN5	ENST00000285873.7	chr5	154311017:154311137:154311658:154311810:154315400:154315582,	154311659	154311810	154311712	154311712	Nonsense_Mutation	C	T	p.W203*
SKCM	TCGA-FR-A3YN-06	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377029	77377029	Nonsense_Mutation	G	A	p.Q1520*
SKCM	TCGA-EE-A3AG-06	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451819	55451819	Nonsense_Mutation	C	T	p.W123*
SKCM	TCGA-EE-A3AG-06	SPG11	ENST00000427534.2,ENST00000261866.7	chr15	44864880:44865018:44865744:44865943:44867099:44867239,	44865745	44865943	44865754	44865754	Nonsense_Mutation	G	A	p.Q2066*
SKCM	TCGA-EE-A3AG-06	MAP3K19	ENST00000315513.3,ENST00000392915.1	chr2	135738390:135739088:135740749:135740901:135741245:135741395,	135740750	135740901	135740892	135740892	Nonsense_Mutation	G	A	p.Q1095*
SKCM	TCGA-EE-A3AG-06	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755896	153755896	Nonsense_Mutation	C	T	p.R210*
SKCM	TCGA-EE-A3AG-06	TLE2	ENST00000591529.1,ENST00000426948.2	chr19	3000644:3000721:3002350:3002501:3005434:3005582,2997921:2997953:3002350:3002501:3005434:3005582,	3002351	3002501	3002402	3002402	Nonsense_Mutation	G	A	p.Q666*
SKCM	TCGA-EE-A3AG-06	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	49009217:49009343:49019265:49019345:49030645:49030751,	49019266	49019345	49019273	49019273	Nonsense_Mutation	G	A	p.W398*
SKCM	TCGA-EE-A3AG-06	TIMD4	ENST00000274532.2	chr5	156353273:156353323:156375426:156375510:156376661:156376742,	156375427	156375510	156375464	156375464	Nonsense_Mutation	C	T	p.W269*
SKCM	TCGA-EE-A3AG-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
SKCM	TCGA-EE-A3AG-06	EEFSEC	ENST00000254730.6	chr3	127983459:127983624:128060075:128060732:128077059:128077216,	128060076	128060732	128060522	128060522	Nonsense_Mutation	G	A	p.W411*
SKCM	TCGA-EE-A3AG-06	ADCY1	ENST00000297323.7,ENST00000432715.1	chr7	45614487:45614781:45632357:45632507:45649977:45650096,	45632358	45632507	45632475	45632475	Nonsense_Mutation	C	T	p.R253*
SKCM	TCGA-EE-A3AG-06	PLA2G4A	ENST00000466600.1	chr1	186876096:186876134:186880379:186880521:186901894:186902031,186876096:186876134:186880379:186880521:186908139:186908362,	186880380	186880521	186880420	186880420	Nonsense_Mutation	C	T	p.Q153*
SKCM	TCGA-EE-A3AG-06	SPATA9	ENST00000477047.2,ENST00000274432.8,ENST00000316087.8	chr5	94999656:94999752:95011115:95011343:95018231:95018320,	95011116	95011343	95011280	95011280	Nonsense_Mutation	G	A	p.R72*
SKCM	TCGA-EE-A3AG-06	NEDD4L	ENST00000435432.2,ENST00000586263.1,ENST00000256832.7,ENST00000456173.2,ENST00000382850.4	chr18	56001049:56001124:56008269:56008401:56008909:56009029,	56008270	56008401	56008369	56008369	Nonsense_Mutation	C	T	p.R288*
SKCM	TCGA-EE-A3AG-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124382	12124382	Nonsense_Mutation	C	T	p.Q1452*
SKCM	TCGA-EE-A3AG-06	TMPRSS6	ENST00000406856.1,ENST00000381792.2,ENST00000346753.3,ENST00000406725.1,ENST00000442782.2	chr22	37482322:37482459:37485617:37485822:37491590:37491629,	37485618	37485822	37485790	37485790	Nonsense_Mutation	G	A	p.Q222*
SKCM	TCGA-EE-A3AG-06	NOD2	ENST00000300589.2	chr16	50750497:50750581:50753835:50753919:50756532:50756616,50750801:50750885:50753835:50753919:50756532:50756616,	50753836	50753919	50753891	50753891	Nonsense_Mutation	C	T	p.R896*
SKCM	TCGA-WE-A8ZX-06	LDB2	ENST00000508918.1,ENST00000503178.2,ENST00000512345.1,ENST00000503153.1,ENST00000502640.1,ENST00000441778.2,ENST00000507464.1,ENST00000304523.5,ENST00000515064.1	chr4	16513627:16513727:16587544:16587628:16590332:16590455,	16587545	16587628	16587604	16587604	Nonsense_Mutation	G	A	p.Q186*
SKCM	TCGA-WE-A8ZX-06	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644615	70644615	Nonsense_Mutation	C	T	p.R355*
SKCM	TCGA-WE-A8ZX-06	RPS6KB2	ENST00000312629.5,ENST00000525996.3	chr11	67196997:67197066:67198838:67198986:67199823:67199959,67196997:67197066:67198838:67198986:67199826:67199963,67196997:67197066:67198838:67198986:67200070:67200128,	67198839	67198986	67198944	67198944	Nonsense_Mutation	C	T	p.Q139*
SKCM	TCGA-WE-A8ZX-06	TRIP4	ENST00000560567.1	chr15	64701916:64702027:64710739:64710927:64716229:64716354,	64710740	64710927	64710818	64710818	Nonsense_Mutation	C	T	p.Q417*
SKCM	TCGA-WE-A8ZX-06	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113705048	113705048	Nonsense_Mutation	G	A	p.Q182*
SKCM	TCGA-WE-A8ZX-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577113	7577113	Nonsense_Mutation	A	T	p.C275*
SKCM	TCGA-WE-A8ZN-06	RBMS1	ENST00000409075.1,ENST00000409972.1,ENST00000348849.3,ENST00000409289.2	chr2	161137824:161137875:161141285:161141379:161141505:161141555,	161141286	161141379	161141345	161141345	Nonsense_Mutation	G	A	p.R281*
SKCM	TCGA-ER-A19S-06	CDH13	ENST00000268613.10,ENST00000566620.1,ENST00000539548.2,ENST00000428848.3	chr16	83520081:83520260:83636058:83636199:83704394:83704486,	83636059	83636199	83636110	83636110	Nonsense_Mutation	G	T	p.G338*
SKCM	TCGA-D9-A1JX-06	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000479049.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71895883:71895972:71896241:71896337:71896734:71896876,	71896242	71896337	71896266	71896266	Nonsense_Mutation	G	A	p.W1818*
SKCM	TCGA-D9-A1JX-06	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297737	139297737	Nonsense_Mutation	C	T	p.W53*
SKCM	TCGA-D9-A1JX-06	SIGLEC8	ENST00000340550.5	chr19	51958749:51958941:51960437:51960485:51961187:51961706,	51960438	51960485	51960475	51960475	Nonsense_Mutation	C	T	p.W248*
SKCM	TCGA-FS-A1ZG-06	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247828	149247828	Nonsense_Mutation	C	T	p.Q1310*
SKCM	TCGA-FR-A729-06	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651713	99651713	Nonsense_Mutation	T	A	p.K532*
SKCM	TCGA-FR-A729-06	DMXL2	ENST00000543779.2,ENST00000561079.1,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51755575:51755693:51756871:51757073:51757762:51757848,	51756872	51757073	51756912	51756912	Nonsense_Mutation	G	A	p.R2589*
SKCM	TCGA-FR-A729-06	SREBF2	ENST00000361204.4,ENST00000424354.1,ENST00000491541.1	chr22	42289120:42289289:42290823:42290941:42293055:42293165,	42290824	42290941	42290847	42290847	Nonsense_Mutation	C	T	p.Q801*
SKCM	TCGA-FR-A729-06	FAM118A	ENST00000441876.2,ENST00000405548.3,ENST00000216214.3,ENST00000487732.1	chr22	45726483:45726612:45728305:45728591:45731230:45731263,	45728306	45728591	45728477	45728477	Nonsense_Mutation	C	T	p.Q275*
SKCM	TCGA-FR-A729-06	ANKRD54	ENST00000464849.1,ENST00000406423.1,ENST00000215941.4,ENST00000407117.2,ENST00000411961.2	chr22	38228682:38228751:38228964:38229089:38229165:38229213,	38228965	38229089	38229066	38229066	Nonsense_Mutation	G	A	p.R207*
SKCM	TCGA-FR-A729-06	RPS11	ENST00000594493.1,ENST00000602252.1,ENST00000601306.1,ENST00000599561.1,ENST00000270625.2	chr19	50000837:50000852:50001173:50001303:50002768:50002790,	50001174	50001303	50001235	50001235	Nonsense_Mutation	C	A	p.Y95*
SKCM	TCGA-D3-A3MV-06	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326115	89326115	Nonsense_Mutation	A	T	p.K394*
SKCM	TCGA-D3-A3MV-06	TNS4	ENST00000254051.6	chr17	38638575:38638668:38640735:38640861:38641172:38641259,	38640736	38640861	38640799	38640799	Nonsense_Mutation	G	A	p.R480*
SKCM	TCGA-D3-A3MV-06	GPATCH2	ENST00000366935.3	chr1	217622590:217622679:217665021:217665092:217671697:217671737,	217665022	217665092	217665071	217665071	Nonsense_Mutation	G	A	p.R410*
SKCM	TCGA-D3-A3MV-06	DSC2	ENST00000251081.6,ENST00000280904.6	chr18	28650691:28650816:28651570:28651807:28654648:28654873,	28651571	28651807	28651784	28651784	Nonsense_Mutation	G	A	p.Q638*
SKCM	TCGA-D3-A3MV-06	WDR75	ENST00000436347.1,ENST00000427960.1,ENST00000314761.4	chr2	190334069:190334165:190334801:190334971:190335544:190335604,	190334802	190334971	190334870	190334870	Nonsense_Mutation	C	T	p.Q630*
SKCM	TCGA-D3-A3MV-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-D3-A3MV-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971029	21971029	Nonsense_Mutation	C	T	p.W110*
SKCM	TCGA-D3-A3MV-06	UPF3B	ENST00000345865.2,ENST00000276201.2	chrX	118967988:118968990:118971719:118972014:118972329:118972490,	118971720	118972014	118971941	118971941	Nonsense_Mutation	G	A	p.R361*
SKCM	TCGA-EB-A5UL-06	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85497781:85497855:85500299:85500393:85515474:85515654,	85500300	85500393	85500321	85500321	Nonsense_Mutation	G	A	p.W1102*
SKCM	TCGA-EB-A5UL-06	EMID1	ENST00000430127.1	chr22	29610914:29611028:29611515:29611619:29621121:29621205,29610914:29611028:29611515:29611619:29622478:29622540,	29611516	29611619	29611579	29611579	Nonsense_Mutation	G	A	p.W93*
SKCM	TCGA-EB-A5UL-06	MYO1A	ENST00000433964.1,ENST00000442789.2,ENST00000300119.3	chr12	57441446:57441505:57441772:57441888:57441993:57442121,	57441773	57441888	57441807	57441807	Nonsense_Mutation	G	A	p.Q66*
SKCM	TCGA-EB-A5UL-06	DDO	ENST00000368924.3	chr6	110712973:110714545:110725976:110726153:110729536:110729645,	110725977	110726153	110726086	110726086	Nonsense_Mutation	G	A	p.R145*
SKCM	TCGA-EB-A5UL-06	DHRS7C	ENST00000330255.5,ENST00000571134.1	chr17	9674750:9675013:9676083:9676239:9680509:9680602,	9676084	9676239	9676088	9676088	Nonsense_Mutation	C	T	p.W242*
SKCM	TCGA-EB-A5UL-06	NCOR1	ENST00000395857.3,ENST00000470782.1,ENST00000395849.2,ENST00000458113.2,ENST00000268712.3	chr17	15961784:15961913:15964714:15965208:15965418:15965584,	15964715	15965208	15965063	15965063	Nonsense_Mutation	C	A	p.E1845*
SKCM	TCGA-EB-A5UL-06	RASAL1	ENST00000548972.1,ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000551051.1,ENST00000418411.2	chr12	113557003:113557064:113557166:113557248:113559313:113559443,	113557167	113557248	113557192	113557192	Nonsense_Mutation	C	T	p.W162*
SKCM	TCGA-EB-A5UL-06	RASAL1	ENST00000546727.1	chr12	113554877:113554966:113556932:113557248:113559313:113559443,	113556933	113557248	113557192	113557192	Nonsense_Mutation	C	T	p.W162*
SKCM	TCGA-EB-A5UL-06	CERS2	ENST00000345896.4,ENST00000421609.1,ENST00000368949.4,ENST00000361419.5,ENST00000368954.5,ENST00000271688.6,ENST00000558062.1,ENST00000559020.1	chr1	150940295:150940353:150940558:150940677:150940870:150940954,	150940559	150940677	150940569	150940569	Nonsense_Mutation	G	A	p.R134*
SKCM	TCGA-EB-A5UL-06	CERS2	ENST00000561294.1	chr1	150940295:150940353:150940558:150940650:150940870:150940954,	150940559	150940650	150940569	150940569	Nonsense_Mutation	G	A	p.R134*
SKCM	TCGA-EB-A5UL-06	TPM1	ENST00000404484.4,ENST00000558544.1,ENST00000317516.7,ENST00000288398.6,ENST00000560959.1,ENST00000558347.1,ENST00000560615.1,ENST00000358278.3,ENST00000559397.1	chr15	63353067:63353138:63353396:63353472:63353911:63353987,63353067:63353138:63353396:63353472:63354413:63354476,	63353397	63353472	63353404	63353404	Nonsense_Mutation	C	T	p.R191*
SKCM	TCGA-FS-A1ZZ-06	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000402717.3,ENST00000404971.1	chr2	50280408:50280728:50282092:50282182:50318460:50318632,	50282093	50282182	50282132	50282132	Nonsense_Mutation	G	A	p.R1297*
SKCM	TCGA-FS-A1ZZ-06	SLC6A12	ENST00000545058.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	300233:300377:301643:301814:302442:302543,	301644	301814	301744	301744	Nonsense_Mutation	C	T	p.W534*
SKCM	TCGA-FS-A1ZZ-06	ERBB2	ENST00000406381.2,ENST00000584908.1,ENST00000584450.1,ENST00000578373.1,ENST00000541774.1,ENST00000578199.1,ENST00000540042.1,ENST00000269571.5,ENST00000584601.1,ENST00000583038.1,ENST00000540147.1	chr17	37864573:37864787:37865570:37865705:37866065:37866086,	37865571	37865705	37865597	37865597	Nonsense_Mutation	C	T	p.Q126*
SKCM	TCGA-FS-A1ZZ-06	MAL2	ENST00000522112.2	chr8	120221388:120221440:120233826:120233997:120252404:120252560,120220792:120220844:120233826:120233997:120252404:120252560,120181921:120182023:120233826:120233997:120252404:120252560,	120233827	120233997	120233971	120233971	Nonsense_Mutation	C	T	p.Q93*
SKCM	TCGA-FS-A1ZZ-06	MMP19	ENST00000547685.1,ENST00000548629.1,ENST00000394182.1,ENST00000322569.4,ENST00000552872.1	chr12	56230899:56231158:56231338:56231466:56231626:56231737,	56231339	56231466	56231370	56231370	Nonsense_Mutation	C	T	p.W100*
SKCM	TCGA-FS-A1ZZ-06	MAP2K5	ENST00000557869.1	chr15	67995695:67995746:68040906:68040939:68061939:68062001,	68040907	68040939	68040913	68040913	Nonsense_Mutation	C	T	p.Q370*
SKCM	TCGA-FS-A1ZZ-06	EFR3A	ENST00000254624.5,ENST00000519656.1,ENST00000334503.4	chr8	132999821:132999949:133008652:133008744:133013015:133013203,132999821:132999949:133008652:133008744:133014005:133014054,	133008653	133008744	133008661	133008661	Nonsense_Mutation	C	T	p.R692*
SKCM	TCGA-FS-A1ZZ-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106510	168106510	Nonsense_Mutation	C	T	p.Q2870*
SKCM	TCGA-FS-A1ZZ-06	MMP19	ENST00000547685.1,ENST00000552872.1	chr12	56231626:56231791:56232283:56232518:56233279:56233525,	56232284	56232518	56232287	56232287	Nonsense_Mutation	C	T	p.W251*
SKCM	TCGA-FS-A1ZZ-06	ETNK1	ENST00000266517.4,ENST00000544191.1	chr12	22824205:22824289:22826433:22826594:22837416:22837485,	22826434	22826594	22826574	22826574	Nonsense_Mutation	C	T	p.Q398*
SKCM	TCGA-FS-A1ZZ-06	ZFAND4	ENST00000497028.1	chr10	46148431:46148507:46158989:46159290:46167697:46167722,46147413:46147481:46158989:46159290:46167719:46168210,	46158990	46159290	46159002	46159002	Nonsense_Mutation	G	A	p.R58*
SKCM	TCGA-FS-A1ZZ-06	DHX40	ENST00000577549.1,ENST00000425628.3,ENST00000251241.4,ENST00000451169.2	chr17	57682475:57682545:57682806:57683035:57684393:57684619,	57682807	57683035	57682819	57682819	Nonsense_Mutation	G	T	p.E614*
SKCM	TCGA-ER-A19B-06	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351586	71351586	Nonsense_Mutation	C	T	p.W43*
SKCM	TCGA-ER-A2NG-06	TXNL1	ENST00000217515.6,ENST00000587613.1,ENST00000590954.1,ENST00000586262.1	chr18	54285271:54285357:54291518:54291692:54293591:54293688,	54291519	54291692	54291641	54291641	Nonsense_Mutation	G	A	p.R83*
SKCM	TCGA-ER-A2NG-06	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610700	52610700	Nonsense_Mutation	C	T	p.W1151*
SKCM	TCGA-ER-A2NG-06	SIGLEC7	ENST00000317643.6	chr19	51645626:51646059:51647662:51647941:51648168:51648216,	51647663	51647941	51647745	51647745	Nonsense_Mutation	G	A	p.W172*
SKCM	TCGA-WE-A8ZM-06	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42046499	42046499	Nonsense_Mutation	G	A	p.Q1324*
SKCM	TCGA-GF-A3OT-06	SERPINI2	ENST00000471111.1,ENST00000476257.1,ENST00000461846.1,ENST00000264677.4	chr3	167167103:167167190:167170723:167170821:167182993:167183186,	167170724	167170821	167170817	167170817	Nonsense_Mutation	T	A	p.K291*
SKCM	TCGA-GF-A3OT-06	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119114984:119115195:119115900:119116072:119124870:119125018,	119115901	119116072	119115986	119115986	Nonsense_Mutation	A	T	p.K1421*
SKCM	TCGA-GF-A3OT-06	CD1B	ENST00000368168.3	chr1	158298710:158298804:158299159:158299438:158299641:158299920,	158299160	158299438	158299162	158299162	Nonsense_Mutation	C	T	p.W295*
SKCM	TCGA-GF-A3OT-06	IL20RB	ENST00000329582.4,ENST00000475972.1	chr3	136708282:136708407:136714255:136714398:136728954:136729921,136710779:136710930:136714255:136714398:136728954:136729921,	136714256	136714398	136714338	136714338	Nonsense_Mutation	G	A	p.W255*
SKCM	TCGA-GF-A3OT-06	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005421	150005421	Nonsense_Mutation	C	T	p.W268*
SKCM	TCGA-GN-A269-01	INPP4B	ENST00000308502.4,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000508116.1,ENST00000510812.1,ENST00000262992.4	chr4	143226610:143226690:143235864:143235915:143324090:143324162,	143235865	143235915	143235912	143235912	Nonsense_Mutation	G	A	p.R126*
SKCM	TCGA-GN-A269-01	MRO	ENST00000436348.2,ENST00000431965.2	chr18	48331523:48331706:48333073:48333220:48345950:48345996,	48333074	48333220	48333212	48333212	Nonsense_Mutation	C	T	p.W36*
SKCM	TCGA-GN-A269-01	CDK19	ENST00000463016.1	chr6	110948204:110948348:110953232:110953364:110959851:110959909,110948204:110948348:110953232:110953364:110988636:110988777,	110953233	110953364	110953310	110953310	Nonsense_Mutation	A	T	p.L190*
SKCM	TCGA-GN-A269-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662517	40662517	Nonsense_Mutation	G	A	p.W761*
SKCM	TCGA-GN-A269-01	FYN	ENST00000368682.3,ENST00000518630.1,ENST00000523238.1,ENST00000524310.1,ENST00000518295.1,ENST00000520518.1,ENST00000523570.1,ENST00000517419.1,ENST00000523322.1,ENST00000538466.1,ENST00000368678.4,ENST00000229471.4,ENST00000368667.2,ENST00000462856.2,ENST00000354650.3,ENST00000356013.2,ENST00000523574.1	chr6	112029219:112029223:112035549:112035646:112041007:112041265,	112035550	112035646	112035566	112035566	Nonsense_Mutation	G	A	p.Q110*
SKCM	TCGA-GN-A269-01	GALNTL6	ENST00000506823.1,ENST00000508122.1	chr4	173930328:173930445:173942626:173942776:173961083:173961251,	173942627	173942776	173942764	173942764	Nonsense_Mutation	G	A	p.W542*
SKCM	TCGA-GN-A269-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266069	75266069	Nonsense_Mutation	C	T	p.R1357*
SKCM	TCGA-GN-A269-01	AKAP1	ENST00000571629.1,ENST00000539273.1,ENST00000575032.1,ENST00000481416.1,ENST00000572557.1,ENST00000337714.3	chr17	55191849:55191997:55193471:55193622:55194220:55194288,	55193472	55193622	55193564	55193564	Nonsense_Mutation	C	T	p.R792*
SKCM	TCGA-GN-A269-01	NGEF	ENST00000373552.4,ENST00000539537.1,ENST00000416114.1,ENST00000264051.3	chr2	233752742:233752817:233756067:233756197:233757607:233757760,	233756068	233756197	233756070	233756070	Nonsense_Mutation	G	A	p.Q424*
SKCM	TCGA-ER-A19K-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413734	138413734	Nonsense_Mutation	G	A	p.Q596*
SKCM	TCGA-ER-A19K-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157959622:157959983:157985018:157985187:157997862:157997965,	157985019	157985187	157985081	157985081	Nonsense_Mutation	G	A	p.Q163*
SKCM	TCGA-GN-A26C-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93712394:93712511:93720027:93720171:93721891:93722095,	93720028	93720171	93720073	93720073	Nonsense_Mutation	C	T	p.R1081*
SKCM	TCGA-GN-A26C-01	NR4A2	ENST00000409572.1,ENST00000539077.1,ENST00000426264.1,ENST00000339562.4	chr2	157182255:157182512:157182661:157182840:157183229:157183432,	157182662	157182840	157182757	157182757	Nonsense_Mutation	C	T	p.W482*
SKCM	TCGA-GN-A26C-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31600291:31600769:31601155:31601424:31601635:31601766,	31601156	31601424	31601235	31601235	Nonsense_Mutation	C	T	p.Q1467*
SKCM	TCGA-GN-A26C-01	PIK3CA	ENST00000263967.3	chr3	178935997:178936122:178936983:178937065:178937358:178937523,	178936984	178937065	178937063	178937063	Nonsense_Mutation	C	T	p.Q582*
SKCM	TCGA-GN-A26C-01	FAM118A	ENST00000441876.2,ENST00000405548.3,ENST00000216214.3,ENST00000487732.1	chr22	45726483:45726612:45728305:45728591:45731230:45731263,	45728306	45728591	45728384	45728384	Nonsense_Mutation	C	T	p.Q244*
SKCM	TCGA-GN-A26C-01	GRAP2	ENST00000478445.1	chr22	40343096:40343188:40351822:40351914:40356058:40356178,40322652:40322857:40351822:40351914:40356058:40356178,	40351823	40351914	40351845	40351845	Nonsense_Mutation	G	A	p.W34*
SKCM	TCGA-GN-A26C-01	CYTH1	ENST00000591455.1	chr17	76688498:76688575:76694350:76694462:76694901:76695050,	76694351	76694462	76694375	76694375	Nonsense_Mutation	G	A	p.R204*
SKCM	TCGA-GN-A26C-01	UBE2K	ENST00000295963.6,ENST00000510934.1,ENST00000445950.2	chr4	39699758:39699922:39739039:39739133:39747371:39747430,39699947:39700010:39739039:39739133:39747371:39747430,	39739040	39739133	39739052	39739052	Nonsense_Mutation	C	T	p.Q26*
SKCM	TCGA-GN-A26C-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
SKCM	TCGA-GN-A26C-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000486937.1,ENST00000291688.1	chr21	47676702:47676900:47678852:47679005:47680706:47680820,	47678853	47679005	47678887	47678887	Nonsense_Mutation	G	A	p.Q1234*
SKCM	TCGA-GN-A26C-01	TNR	ENST00000422274.2	chr1	175362915:175363031:175365679:175365943:175372275:175372752,175362915:175363031:175365679:175365943:175375351:175375500,	175365680	175365943	175365882	175365882	Nonsense_Mutation	C	T	p.W346*
SKCM	TCGA-GN-A26C-01	MCCC2	ENST00000510895.2,ENST00000509358.2,ENST00000505787.3,ENST00000340941.6	chr5	70900206:70900295:70922466:70922580:70927947:70928012,	70922467	70922580	70922545	70922545	Nonsense_Mutation	A	T	p.K235*
SKCM	TCGA-GN-A26C-01	CSF3R	ENST00000373104.1,ENST00000484762.1,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4,ENST00000464465.2	chr1	36932221:36932428:36932830:36932912:36933158:36933252,	36932831	36932912	36932837	36932837	Nonsense_Mutation	C	T	p.W647*
SKCM	TCGA-GN-A26C-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000368993.2	chr1	150686560:150686597:150689613:150689758:150691948:150692014,150687090:150687154:150689613:150689758:150691948:150692014,	150689614	150689758	150689631	150689631	Nonsense_Mutation	C	T	p.W4*
SKCM	TCGA-GN-A26C-01	HORMAD1	ENST00000476530.1	chr1	150687090:150687154:150689613:150689783:150691948:150692014,	150689614	150689783	150689631	150689631	Nonsense_Mutation	C	T	p.W4*
SKCM	TCGA-GN-A26C-01	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121758562:121759434:121767663:121767777,121739487:121739560:121758562:121759434:121761046:121761226,	121758563	121759434	121758579	121758579	Nonsense_Mutation	G	A	p.W96*
SKCM	TCGA-GN-A26C-01	TBXAS1	ENST00000448866.1,ENST00000458722.1,ENST00000425687.1,ENST00000436047.2,ENST00000422328.1,ENST00000336425.5,ENST00000416849.2,ENST00000263552.6	chr7	139715522:139715660:139717470:139717633:139719824:139720079,	139717471	139717633	139717613	139717613	Nonsense_Mutation	C	T	p.Q504*
SKCM	TCGA-GN-A26C-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000557340.1	chr15	93515112:93515157:93515494:93515647:93518108:93518180,	93515495	93515647	93515552	93515552	Nonsense_Mutation	C	T	p.R804*
SKCM	TCGA-GN-A26C-01	KIRREL2	ENST00000360202.5,ENST00000262625.7,ENST00000347900.6,ENST00000586102.3,ENST00000592409.1	chr19	36349309:36349459:36349605:36349766:36350382:36350433,	36349606	36349766	36349728	36349728	Nonsense_Mutation	C	T	p.R162*
SKCM	TCGA-GN-A26C-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749422	196749422	Nonsense_Mutation	G	A	p.R1884*
SKCM	TCGA-GN-A26C-01	CCDC83	ENST00000526729.1,ENST00000376067.1	chr11	85584273:85584338:85593555:85593718:85606335:85606427,	85593556	85593718	85593684	85593684	Nonsense_Mutation	G	A	p.W103*
SKCM	TCGA-GN-A26C-01	CFHR2	ENST00000367415.5	chr1	196912987:196913068:196918584:196918779:196920029:196920158,196912987:196913068:196918584:196918779:196919981:196920069,	196918585	196918779	196918726	196918726	Nonsense_Mutation	G	A	p.W67*
SKCM	TCGA-GN-A26C-01	CFHR2	ENST00000489703.1	chr1	196912987:196913068:196918565:196918779:196919981:196920069,	196918566	196918779	196918726	196918726	Nonsense_Mutation	G	A	p.W67*
SKCM	TCGA-GN-A26C-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25777898:25777982:25780697:25780825:25783863:25784040,	25780698	25780825	25780821	25780821	Nonsense_Mutation	A	T	p.L821*
SKCM	TCGA-GN-A26C-01	ZMIZ1	ENST00000334512.5,ENST00000478357.1,ENST00000472035.1	chr10	81036937:81037082:81049531:81049646:81050715:81050842,	81049532	81049646	81049619	81049619	Nonsense_Mutation	G	A	p.W171*
SKCM	TCGA-EB-A6L9-06	SFXN1	ENST00000321442.5,ENST00000515736.2,ENST00000502865.1,ENST00000507823.1	chr5	174938453:174938529:174939113:174939199:174940465:174940593,	174939114	174939199	174939195	174939195	Nonsense_Mutation	C	T	p.Q198*
SKCM	TCGA-D3-A1QA-06	MOG	ENST00000376889.3,ENST00000376894.4,ENST00000376902.3,ENST00000416766.2,ENST00000376888.2,ENST00000533330.2,ENST00000485211.1,ENST00000376917.3,ENST00000376898.3	chr6	29635680:29635701:29638057:29638174:29638477:29638498,	29638058	29638174	29638086	29638086	Nonsense_Mutation	G	A	p.W207*
SKCM	TCGA-D3-A1QA-06	ARL6IP1	ENST00000546206.2,ENST00000304414.7,ENST00000562234.2	chr16	18805920:18806005:18806785:18806903:18809246:18809366,	18806786	18806903	18806848	18806848	Nonsense_Mutation	G	A	p.R116*
SKCM	TCGA-D3-A1QA-06	KAT2B	ENST00000426228.1,ENST00000263754.4	chr3	20113824:20113951:20136754:20136900:20141353:20141446,	20136755	20136900	20136846	20136846	Nonsense_Mutation	T	A	p.C174*
SKCM	TCGA-D3-A1QA-06	ATP6V0A2	ENST00000330342.3,ENST00000545059.1,ENST00000504192.2	chr12	124221605:124221818:124228331:124228482:124228747:124228884,	124228332	124228482	124228431	124228431	Nonsense_Mutation	C	T	p.Q380*
SKCM	TCGA-D3-A3C3-06	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27100919	27100919	Nonsense_Mutation	C	T	p.Q1401*
SKCM	TCGA-D3-A3C3-06	PRSS16	ENST00000468930.1	chr6	27216714:27216725:27216878:27217008:27220586:27220728,27215673:27215827:27216878:27217008:27220586:27220728,	27216879	27217008	27216906	27216906	Nonsense_Mutation	G	A	p.W122*
SKCM	TCGA-D3-A3C3-06	RAD51C	ENST00000583539.1,ENST00000337432.4,ENST00000413590.1,ENST00000584617.1,ENST00000482007.1	chr17	56780556:56780690:56787219:56787351:56798106:56798173,	56787220	56787351	56787223	56787223	Nonsense_Mutation	C	T	p.R237*
SKCM	TCGA-EE-A29C-06	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640672	17640672	Nonsense_Mutation	G	A	p.Q161*
SKCM	TCGA-EE-A29C-06	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1	chr3	138413627:138413749:138417748:138417937:138423284:138423335,	138417749	138417937	138417774	138417774	Nonsense_Mutation	C	T	p.W582*
SKCM	TCGA-EE-A29C-06	NUCKS1	ENST00000367142.4	chr1	205693053:205693109:205696827:205696933:205698699:205698749,	205696828	205696933	205696889	205696889	Nonsense_Mutation	G	A	p.R38*
SKCM	TCGA-EE-A29P-06	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19056662:19056760:19058384:19058571:19063007:19063138,	19058385	19058571	19058495	19058495	Nonsense_Mutation	G	A	p.W445*
SKCM	TCGA-EE-A29P-06	DGKQ	ENST00000273814.3	chr4	958963:959079:959278:959317:959715:959866,	959279	959317	959282	959282	Nonsense_Mutation	G	A	p.Q539*
SKCM	TCGA-EE-A29P-06	CADM4	ENST00000222374.2	chr19	44130295:44130440:44130935:44131070:44131317:44131470,	44130936	44131070	44130962	44130962	Nonsense_Mutation	C	T	p.W158*
SKCM	TCGA-EB-A5SE-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436784	16436784	Nonsense_Mutation	G	A	p.R470*
SKCM	TCGA-D3-A8GR-06	CIB2	ENST00000559645.1	chr15	78398195:78398276:78401576:78401851:78416046:78416081,	78401577	78401851	78401613	78401613	Nonsense_Mutation	G	A	p.R104*
SKCM	TCGA-D3-A8GR-06	CIB2	ENST00000557917.1	chr15	78398195:78398276:78401576:78401724:78423506:78423567,78398195:78398276:78401576:78401724:78416046:78416081,	78401577	78401724	78401613	78401613	Nonsense_Mutation	G	A	p.R104*
SKCM	TCGA-D3-A8GR-06	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46567250:46567326:46568662:46568846:46569366:46569425,	46568663	46568846	46568718	46568718	Nonsense_Mutation	G	C	p.S108*
SKCM	TCGA-D3-A8GR-06	PSG11	ENST00000401740.1,ENST00000320078.7	chr19	43518232:43519522:43522921:43523200:43528842:43529208,	43522922	43523200	43523091	43523091	Nonsense_Mutation	C	T	p.W180*
SKCM	TCGA-ER-A19P-06	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7768912:7769081:7769665:7769791:7771914:7772096,	7769666	7769791	7769728	7769728	Nonsense_Mutation	G	T	p.G406*
SKCM	TCGA-ER-A19P-06	ZNF197	ENST00000383744.4,ENST00000344387.4,ENST00000383745.2,ENST00000334075.6,ENST00000396058.1	chr3	44672553:44672713:44673596:44673688:44673964:44674091,	44673597	44673688	44673611	44673611	Nonsense_Mutation	G	T	p.E189*
SKCM	TCGA-ER-A19P-06	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7166164:7166415:7167978:7168105:7170547:7170762,	7167979	7168105	7168046	7168046	Nonsense_Mutation	T	A	p.R515*
SKCM	TCGA-ER-A19P-06	SRSF11	ENST00000370950.3,ENST00000463877.1	chr1	70671417:70671463:70687294:70687522:70694104:70694238,	70687295	70687522	70687416	70687416	Nonsense_Mutation	G	T	p.E33*
SKCM	TCGA-ER-A19P-06	SRSF11	ENST00000454435.2,ENST00000405432.1	chr1	70671417:70671463:70687297:70687522:70694104:70694238,	70687298	70687522	70687416	70687416	Nonsense_Mutation	G	T	p.E33*
SKCM	TCGA-ER-A19P-06	TUBGCP3	ENST00000375669.3,ENST00000261965.3	chr13	113153358:113153499:113158345:113158477:113158939:113159028,	113158346	113158477	113158471	113158471	Nonsense_Mutation	C	A	p.E728*
SKCM	TCGA-ER-A19P-06	CRY1	ENST00000008527.5,ENST00000552790.1	chr12	107395541:107395726:107398883:107399026:107415861:107415970,	107398884	107399026	107398999	107398999	Nonsense_Mutation	C	A	p.E99*
SKCM	TCGA-ER-A19P-06	PPP1R12A	ENST00000547330.1,ENST00000450142.2,ENST00000550107.1,ENST00000550510.1,ENST00000261207.5,ENST00000437004.2	chr12	80239081:80239200:80266587:80266718:80328474:80328495,	80266588	80266718	80266607	80266607	Nonsense_Mutation	C	A	p.G117*
SKCM	TCGA-ER-A19P-06	DYNC1LI2	ENST00000564090.1,ENST00000568180.2,ENST00000258198.2,ENST00000379482.2	chr16	66770099:66770147:66783099:66783216:66785175:66785206,66776353:66776571:66783099:66783216:66785175:66785206,	66783100	66783216	66783166	66783166	Nonsense_Mutation	C	A	p.E78*
SKCM	TCGA-ER-A19P-06	XAB2	ENST00000534844.1,ENST00000358368.4	chr19	7690765:7690930:7691021:7691156:7692128:7692326,	7691022	7691156	7691126	7691126	Nonsense_Mutation	C	A	p.E185*
SKCM	TCGA-ER-A19P-06	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199780	20199780	Nonsense_Mutation	C	T	p.W68*
SKCM	TCGA-ER-A19P-06	TDP1	ENST00000393452.3,ENST00000555880.1,ENST00000357382.3,ENST00000555178.1,ENST00000393454.2,ENST00000335725.4	chr14	90446883:90446976:90450859:90451027:90451475:90451554,	90450860	90451027	90450897	90450897	Nonsense_Mutation	G	T	p.G308*
SKCM	TCGA-ER-A19P-06	SERPINB7	ENST00000425392.1,ENST00000336429.2,ENST00000431370.1,ENST00000398019.2,ENST00000447428.1,ENST00000546027.1	chr18	61449588:61449774:61459626:61459677:61460394:61460511,	61459627	61459677	61459657	61459657	Nonsense_Mutation	G	T	p.G67*
SKCM	TCGA-ER-A19P-06	MNX1	ENST00000252971.6	chr7	156798535:156798567:156799172:156799333:156801691:156801981,156798535:156798567:156799172:156799333:156802353:156802391,	156799173	156799333	156799208	156799208	Nonsense_Mutation	C	A	p.E273*
SKCM	TCGA-ER-A19P-06	CAMTA1	ENST00000486138.1	chr1	6845611:6845635:6880240:6880310:6885151:6885270,6867047:6867148:6880240:6880310:6885151:6885270,	6880241	6880310	6880265	6880265	Nonsense_Mutation	G	T	p.G24*
SKCM	TCGA-ER-A19P-06	EHBP1	ENST00000263991.5,ENST00000422032.1,ENST00000405289.1,ENST00000354487.3	chr2	63206457:63206470:63215065:63215173:63217850:63217975,	63215066	63215173	63215083	63215083	Nonsense_Mutation	G	T	p.E911*
SKCM	TCGA-ER-A19P-06	PARP2	ENST00000250416.5,ENST00000527915.1,ENST00000429687.3	chr14	20822243:20822406:20822967:20823106:20823910:20823974,	20822968	20823106	20823075	20823075	Nonsense_Mutation	G	T	p.E304*
SKCM	TCGA-ER-A19P-06	RGS3	ENST00000496113.1,ENST00000478599.1,ENST00000343817.5,ENST00000374140.2,ENST00000350696.5	chr9	116291500:116291544:116299075:116299198:116345729:116345951,	116299076	116299198	116299110	116299110	Nonsense_Mutation	C	A	p.S650*
SKCM	TCGA-ER-A19P-06	RIPK4	ENST00000332512.3,ENST00000544709.1,ENST00000542057.1	chr21	43165918:43166022:43166772:43166931:43169313:43169363,	43166773	43166931	43166929	43166929	Nonsense_Mutation	C	A	p.E226*
SKCM	TCGA-ER-A19P-06	ABI3BP	ENST00000495063.1,ENST00000284322.5,ENST00000533855.1,ENST00000471714.1	chr3	100569503:100569578:100570718:100570784:100581154:100581229,	100570719	100570784	100570746	100570746	Nonsense_Mutation	C	A	p.E449*
SKCM	TCGA-ER-A19P-06	LPO	ENST00000262290.4,ENST00000580890.1,ENST00000543544.1,ENST00000389576.4,ENST00000421678.2,ENST00000582328.1	chr17	56332171:56332332:56342082:56342335:56343513:56343687,	56342083	56342335	56342160	56342160	Nonsense_Mutation	C	G	p.Y448*
SKCM	TCGA-ER-A19P-06	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42744097	42744097	Nonsense_Mutation	G	A	p.Q102*
SKCM	TCGA-ER-A19P-06	DNAH5	ENST00000265104.4	chr5	13735239:13735430:13735926:13736041:13737360:13737604,	13735927	13736041	13736003	13736003	Nonsense_Mutation	C	A	p.E3832*
SKCM	TCGA-ER-A19P-06	SMPD1	ENST00000531303.1	chr11	6413422:6413426:6414445:6414617:6414846:6414923,6412616:6413386:6414445:6414617:6414846:6414923,6412613:6412733:6414445:6414617:6414846:6414923,	6414446	6414617	6414574	6414574	Nonsense_Mutation	G	A	p.W407*
SKCM	TCGA-ER-A19P-06	CCL20	ENST00000358813.4	chr2	228678569:228678703:228680169:228680284:228681022:228681100,	228680170	228680284	228680196	228680196	Nonsense_Mutation	G	T	p.G34*
SKCM	TCGA-ER-A19P-06	PDHA1	ENST00000540249.1	chrX	19371199:19371291:19373466:19373622:19373803:19373875,	19373467	19373622	19373504	19373504	Nonsense_Mutation	G	A	p.W252*
SKCM	TCGA-D9-A148-06	METTL22	ENST00000163678.7	chr16	8722901:8722967:8729024:8729169:8732947:8733019,	8729025	8729169	8729067	8729067	Nonsense_Mutation	C	T	p.R200*
SKCM	TCGA-D9-A148-06	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45782746:45782926:45785591:45785777:45789513:45789721,	45785592	45785777	45785651	45785651	Nonsense_Mutation	G	A	p.R558*
SKCM	TCGA-D9-A148-06	BLNK	ENST00000427367.2,ENST00000371176.2,ENST00000472763.1,ENST00000413476.2,ENST00000224337.5	chr10	97976408:97976490:97983581:97983745:97987165:97987253,	97983582	97983745	97983740	97983740	Nonsense_Mutation	G	A	p.R123*
STAD	TCGA-D7-A6F0-01	PNPLA5	ENST00000216177.4	chr22	44285678:44285744:44286941:44287174:44287567:44287875,	44286942	44287174	44287076	44287076	Nonsense_Mutation	G	A	p.Q98X
STAD	TCGA-D7-A6EZ-01	HLA-C	ENST00000376237.4	chr6	31238215:31238262:31238849:31239108:31239375:31239533,	31238850	31239108	31238916	31238916	Nonsense_Mutation	C	A	p.E185X
STAD	TCGA-D7-A6EZ-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000495835.1,ENST00000415537.1	chr6	31238215:31238262:31238849:31239125:31239375:31239533,	31238850	31239125	31238916	31238916	Nonsense_Mutation	C	A	p.E185X
STAD	TCGA-D7-A6EZ-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911227	29911227	Nonsense_Mutation	G	T	p.E176X
STAD	TCGA-D7-A6EZ-01	CNNM1	ENST00000356713.4,ENST00000370534.4,ENST00000446890.1	chr10	101147576:101147760:101147908:101148058:101150062:101150164,	101147909	101148058	101147910	101147910	Nonsense_Mutation	C	A	p.C842X
STAD	TCGA-VQ-A8DT-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
STAD	TCGA-VQ-A8DT-01	CDH6	ENST00000514738.1,ENST00000265071.2	chr5	31302217:31302405:31305280:31305534:31313424:31313561,	31305281	31305534	31305340	31305340	Nonsense_Mutation	T	G	p.Y353X
STAD	TCGA-IN-A6RL-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992025	21992025	Nonsense_Mutation	C	A	p.G613X
STAD	TCGA-IN-A6RL-01	POMT1	ENST00000541219.1,ENST00000485278.1,ENST00000402686.3,ENST00000354713.4,ENST00000404875.2,ENST00000372220.4,ENST00000372228.3,ENST00000423007.1,ENST00000341012.7,ENST00000419118.2	chr9	134396732:134396859:134397433:134397611:134398318:134398535,	134397434	134397611	134397514	134397514	Nonsense_Mutation	G	T	p.E658X
STAD	TCGA-IN-A6RL-01	LRP1B	ENST00000389484.3,ENST00000437977.1	chr2	141110521:141110641:141113910:141114045:141115547:141115637,	141113911	141114045	141114004	141114004	Nonsense_Mutation	C	A	p.G3813X
STAD	TCGA-KB-A93G-01	ZYG11B	ENST00000443756.2,ENST00000294353.6	chr1	53279531:53279584:53282203:53282301:53287110:53287401,	53282204	53282301	53282280	53282280	Nonsense_Mutation	C	T	p.Q675X
STAD	TCGA-KB-A93G-01	LTBP1	ENST00000415140.2	chr2	33500975:33500990:33505105:33505225:33518226:33518349,33500975:33500990:33505105:33505225:33525517:33525640,	33505106	33505225	33505201	33505201	Nonsense_Mutation	C	T	p.R1030X
STAD	TCGA-VQ-AA69-01	TOR1AIP1	ENST00000474875.1,ENST00000528443.2,ENST00000435319.4,ENST00000527391.1,ENST00000606911.2,ENST00000531630.2,ENST00000271583.3	chr1	179870436:179870523:179873100:179873157:179876957:179876999,	179873101	179873157	179873152	179873152	Nonsense_Mutation	C	G	p.S265X
STAD	TCGA-KB-A93J-01	WDR20	ENST00000556094.1	chr14	102606317:102606509:102661274:102661457:102674939:102675020,102606251:102606324:102661274:102661457:102689166:102689695,	102661275	102661457	102661431	102661431	Nonsense_Mutation	G	T	p.E148X
STAD	TCGA-RD-A7BW-01	CYP11A1	ENST00000419019.2,ENST00000268053.6,ENST00000358632.4	chr15	74630911:74631109:74631577:74631656:74631927:74632094,	74631578	74631656	74631601	74631601	Nonsense_Mutation	G	A	p.R405X
STAD	TCGA-MX-A5UJ-01	C11orf65	ENST00000393084.1,ENST00000529391.1,ENST00000527531.1	chr11	108277489:108277690:108277822:108277876:108302472:108302565,	108277823	108277876	108277840	108277840	Nonsense_Mutation	G	A	p.R71X
STAD	TCGA-MX-A5UJ-01	PAPPA	ENST00000328252.3	chr9	118969734:118969880:118973917:118974211:118982215:118982408,	118973918	118974211	118974016	118974016	Nonsense_Mutation	C	T	p.R575X
STAD	TCGA-MX-A5UJ-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730959	150730959	Nonsense_Mutation	G	A	p.W121X
STAD	TCGA-MX-A5UJ-01	PRICKLE2	ENST00000564377.1,ENST00000295902.6	chr3	64132505:64133378:64138857:64139044:64142837:64143041,	64138858	64139044	64139008	64139008	Nonsense_Mutation	G	A	p.R213X
STAD	TCGA-MX-A5UJ-01	ADAM2	ENST00000347580.4,ENST00000265708.4	chr8	39607185:39607263:39613246:39613430:39618694:39618800,	39613247	39613430	39613417	39613417	Nonsense_Mutation	C	A	p.G543X
STAD	TCGA-MX-A5UJ-01	SRF	ENST00000265354.4,ENST00000457278.2	chr6	43141584:43141851:43143443:43143705:43144285:43144405,	43143444	43143705	43143531	43143531	Nonsense_Mutation	C	T	p.Q290X
STAD	TCGA-MX-A5UJ-01	CMYA5	ENST00000446378.2	chr5	79057633:79057780:79058884:79059032:79084793:79084927,	79058885	79059032	79058947	79058947	Nonsense_Mutation	C	T	p.R3824X
STAD	TCGA-VQ-A8DU-01	DHX57	ENST00000452978.1	chr2	39025493:39025584:39029856:39030057:39033700:39033835,39025493:39025584:39029856:39030057:39040962:39041037,	39029857	39030057	39029991	39029991	Nonsense_Mutation	G	A	p.R1295X
STAD	TCGA-VQ-A8DU-01	KDELC2	ENST00000323468.5,ENST00000434945.2	chr11	108348333:108348438:108350027:108350222:108351906:108352103,	108350028	108350222	108350175	108350175	Nonsense_Mutation	A	T	p.Y382X
STAD	TCGA-FP-A8CX-01	NELFCD	ENST00000460601.1,ENST00000344018.3,ENST00000602795.1	chr20	57568536:57568599:57568678:57568819:57569164:57569246,	57568679	57568819	57568760	57568760	Nonsense_Mutation	C	T	p.R526X
STAD	TCGA-IN-AB1X-01	TGFBR1	ENST00000374990.2	chr9	101867431:101867584:101891136:101891382:101894790:101895008,101867431:101867584:101891136:101891382:101900140:101900346,	101891137	101891382	101891277	101891277	Nonsense_Mutation	C	T	p.R80X
STAD	TCGA-IN-AB1X-01	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927177	43927177	Nonsense_Mutation	G	A	p.W360X
STAD	TCGA-B7-A5TI-01	MRPL46	ENST00000312475.4	chr15	89002838:89003094:89007933:89008107:89010380:89010620,89002838:89003094:89007933:89008107:89008817:89008978,	89007934	89008107	89008087	89008087	Nonsense_Mutation	G	A	p.R146X
STAD	TCGA-B7-A5TI-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577085	7577085	Nonsense_Mutation	C	A	p.E285X
STAD	TCGA-B7-A5TI-01	FTSJ3	ENST00000427159.2,ENST00000583901.1	chr17	61898274:61898298:61898389:61898475:61898713:61899003,	61898390	61898475	61898450	61898450	Nonsense_Mutation	G	A	p.R638X
STAD	TCGA-B7-A5TI-01	HNRNPA2B1	ENST00000354667.4,ENST00000356674.7,ENST00000490912.1	chr7	26231920:26231958:26232114:26232197:26232870:26232993,	26232115	26232197	26232144	26232144	Nonsense_Mutation	G	A	p.R352X
STAD	TCGA-B7-A5TI-01	ATRNL1	ENST00000423111.2,ENST00000355044.3,ENST00000303745.7	chr10	117308967:117309046:117486757:117486865:117607387:117607502,	117486758	117486865	117486773	117486773	Nonsense_Mutation	C	T	p.R1271X
STAD	TCGA-R5-A7O7-01	ANKS1A	ENST00000535627.1,ENST00000360359.3	chr6	34937786:34937943:34949466:34949763:34950528:34950604,	34949467	34949763	34949611	34949611	Nonsense_Mutation	C	T	p.R194X
STAD	TCGA-MX-A663-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375897.3,ENST00000375888.1	chr10	27493375:27493478:27494126:27494177:27497174:27497374,	27494127	27494177	27494141	27494141	Nonsense_Mutation	G	A	p.Q481X
STAD	TCGA-VQ-AA6B-01	CD44	ENST00000434472.2,ENST00000527889.1,ENST00000525211.1,ENST00000360158.4,ENST00000433354.2,ENST00000526000.1,ENST00000442151.2,ENST00000415148.2,ENST00000428726.2,ENST00000449691.2,ENST00000437706.2,ENST00000263398.6,ENST00000433892.2,ENST00000279452.6,ENST00000528455.1,ENST00000352818.4,ENST00000531118.1	chr11	35198245:35198287:35201820:35201954:35208378:35208447,	35201821	35201954	35201924	35201924	Nonsense_Mutation	C	T	p.Q113X
STAD	TCGA-VQ-AA6B-01	PTGIS	ENST00000478971.1,ENST00000244043.4	chr20	48124520:48124601:48127564:48127716:48129616:48129798,	48127565	48127716	48127701	48127701	Nonsense_Mutation	G	A	p.R408X
STAD	TCGA-VQ-AA6B-01	TBL1Y	ENST00000383032.1,ENST00000346432.3,ENST00000355162.2	chrY	6954330:6954458:6955307:6955473:6958129:6958231,	6955308	6955473	6955427	6955427	Nonsense_Mutation	T	A	p.L467X
STAD	TCGA-VQ-AA6B-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56585989	56585989	Nonsense_Mutation	C	G	p.S157X
STAD	TCGA-HF-A5NB-01	ATL2	ENST00000419554.2,ENST00000474535.2,ENST00000378954.4,ENST00000332337.4,ENST00000452935.2	chr2	38545676:38545781:38546026:38546161:38570409:38570557,	38546027	38546161	38546107	38546107	Nonsense_Mutation	G	A	p.R140X
STAD	TCGA-HF-A5NB-01	UBE2J2	ENST00000509720.1	chr1	1191428:1191505:1192371:1192510:1198725:1198766,	1192372	1192510	1192459	1192459	Nonsense_Mutation	C	T	p.W125X
STAD	TCGA-HF-A5NB-01	PTPRM	ENST00000444013.1,ENST00000578571.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	8076452:8076562:8085668:8085870:8088746:8088849,	8085669	8085870	8085807	8085807	Nonsense_Mutation	C	T	p.R564X
STAD	TCGA-HF-A5NB-01	DYRK1A	ENST00000321219.8,ENST00000338785.3,ENST00000451934.1,ENST00000398960.2,ENST00000398956.2,ENST00000339659.4	chr21	38852939:38853128:38858768:38858916:38862476:38862763,	38858769	38858916	38858865	38858865	Nonsense_Mutation	C	T	p.R205X
STAD	TCGA-HF-A5NB-01	NUDT1	ENST00000343985.4,ENST00000397048.1,ENST00000397049.1	chr7	2282559:2282610:2284197:2284361:2289491:2289637,2282559:2282683:2284197:2284361:2289491:2289637,	2284198	2284361	2284282	2284282	Nonsense_Mutation	C	T	p.R48X
STAD	TCGA-HF-A5NB-01	EYA4	ENST00000531861.1,ENST00000367895.5,ENST00000355286.6,ENST00000531901.1,ENST00000525849.1,ENST00000430974.2,ENST00000452339.2,ENST00000355167.3,ENST00000431403.2	chr6	133782251:133782318:133783472:133783615:133783758:133783872,	133783473	133783615	133783599	133783599	Nonsense_Mutation	C	A	p.Y188X
STAD	TCGA-HF-A5NB-01	EYA4	ENST00000421413.2	chr6	133782251:133782318:133783501:133783615:133783758:133783872,	133783502	133783615	133783599	133783599	Nonsense_Mutation	C	A	p.Y188X
STAD	TCGA-HF-A5NB-01	RSPH3	ENST00000252655.1,ENST00000367069.2	chr6	159404693:159404839:159407311:159407453:159414870:159414958,	159407312	159407453	159407432	159407432	Nonsense_Mutation	C	A	p.E218X
STAD	TCGA-VQ-AA68-01	TRAM1	ENST00000262213.2,ENST00000520700.1,ENST00000521425.1,ENST00000518678.1,ENST00000536748.1	chr8	71510129:71510246:71510368:71510490:71512253:71512317,	71510369	71510490	71510488	71510488	Nonsense_Mutation	C	A	p.E64X
STAD	TCGA-VQ-AA68-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578179	7578179	Nonsense_Mutation	C	A	p.E224X
STAD	TCGA-R5-A7ZI-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911960	29911960	Nonsense_Mutation	C	A	p.C227X
STAD	TCGA-R5-A7ZI-01	NELL2	ENST00000452445.2,ENST00000333837.4,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	44917136:44917267:44926363:44926504:45000951:45001047,	44926364	44926504	44926491	44926491	Nonsense_Mutation	G	T	p.C609X
STAD	TCGA-R5-A7ZI-01	ANTXR1	ENST00000409349.3,ENST00000303714.4	chr2	69351696:69351775:69379300:69379396:69397379:69397421,	69379301	69379396	69379378	69379378	Nonsense_Mutation	G	A	p.W343X
STAD	TCGA-R5-A7ZI-01	TNIP1	ENST00000315050.7,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000521591.1	chr5	150410249:150410308:150411847:150411944:150414562:150414628,150410249:150410308:150411847:150411944:150413168:150413360,	150411848	150411944	150411908	150411908	Nonsense_Mutation	G	A	p.R606X
STAD	TCGA-R5-A7ZI-01	GPATCH2L	ENST00000312858.5,ENST00000554125.1,ENST00000261530.7	chr14	76618278:76618334:76620696:76621368:76633005:76633070,	76620697	76621368	76621076	76621076	Nonsense_Mutation	C	T	p.R124X
STAD	TCGA-R5-A7ZI-01	ALKBH6	ENST00000497999.1	chr19	36501795:36501947:36503902:36503991:36504245:36504324,	36503903	36503991	36503974	36503974	Nonsense_Mutation	G	T	p.Y52X
STAD	TCGA-R5-A7ZI-01	ALKBH6	ENST00000490986.1,ENST00000252984.7,ENST00000590666.1,ENST00000475223.1,ENST00000468004.1,ENST00000485128.1,ENST00000378875.3,ENST00000392183.3,ENST00000466196.1	chr19	36502305:36502366:36503922:36503991:36504245:36504324,	36503923	36503991	36503974	36503974	Nonsense_Mutation	G	T	p.Y52X
STAD	TCGA-R5-A7ZI-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17378635	17378635	Nonsense_Mutation	C	T	p.R396X
STAD	TCGA-R5-A7ZI-01	GALNT13	ENST00000392825.3	chr2	155265522:155265594:155295103:155295238:155306922:155307206,	155295104	155295238	155295134	155295134	Nonsense_Mutation	C	T	p.R476X
STAD	TCGA-B7-A5TK-01	WDR88	ENST00000355868.3,ENST00000361680.2	chr19	33642086:33642216:33647260:33647448:33651319:33651402,	33647261	33647448	33647373	33647373	Nonsense_Mutation	C	T	p.R308X
STAD	TCGA-B7-A5TK-01	CDC27	ENST00000570818.1,ENST00000066544.3,ENST00000526866.1,ENST00000527547.1,ENST00000533415.1,ENST00000525495.2,ENST00000446365.2,ENST00000531206.1	chr17	45232120:45232152:45234278:45234490:45234595:45234633,	45234279	45234490	45234411	45234411	Nonsense_Mutation	G	T	p.S237X
STAD	TCGA-VQ-A8P2-01	SHQ1	ENST00000325599.8,ENST00000444040.2,ENST00000463369.1	chr3	72799109:72799987:72842066:72842187:72861821:72861945,	72842067	72842187	72842081	72842081	Nonsense_Mutation	C	T	p.W389X
STAD	TCGA-VQ-A8P2-01	PSG11	ENST00000401740.1,ENST00000320078.7	chr19	43522921:43523200:43528842:43529208:43530460:43530618,	43528843	43529208	43528981	43528981	Nonsense_Mutation	G	A	p.R98X
STAD	TCGA-VQ-A8P2-01	IQSEC1	ENST00000429247.1	chr3	12938718:12940933:12944272:12944322:12949848:12950025,12942347:12943022:12944272:12944322:12949848:12950025,	12944273	12944322	12944317	12944317	Nonsense_Mutation	G	A	p.R935X
STAD	TCGA-VQ-A8P2-01	MAST4	ENST00000405643.1,ENST00000403625.2,ENST00000261569.7,ENST00000403666.1,ENST00000404260.3	chr5	66441063:66441207:66445216:66445417:66448464:66448694,	66445217	66445417	66445330	66445330	Nonsense_Mutation	C	T	p.R1070X
STAD	TCGA-VQ-A8P2-01	TBC1D9	ENST00000442267.2	chr4	141590787:141590958:141591873:141592080:141598047:141598255,	141591874	141592080	141592017	141592017	Nonsense_Mutation	G	A	p.R375X
STAD	TCGA-VQ-A8P2-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000455749.1,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000374875.1,ENST00000265371.4	chr10	33542955:33543122:33545243:33545399:33552573:33552632,	33545244	33545399	33545349	33545349	Nonsense_Mutation	G	A	p.R237X
STAD	TCGA-VQ-A8P2-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74287393	74287393	Nonsense_Mutation	G	A	p.R973X
STAD	TCGA-VQ-A8P2-01	CXorf56	ENST00000320339.4,ENST00000371594.4,ENST00000536133.1,ENST00000469448.1	chrX	118673532:118673752:118675290:118675383:118676467:118676557,	118675291	118675383	118675299	118675299	Nonsense_Mutation	G	A	p.Q200X
STAD	TCGA-VQ-A8P2-01	EIF2B3	ENST00000372183.3,ENST00000360403.2,ENST00000439363.1	chr1	45341289:45341367:45345489:45345680:45347283:45347411,	45345490	45345680	45345609	45345609	Nonsense_Mutation	G	A	p.R286X
STAD	TCGA-VQ-A8P2-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143093268	143093268	Nonsense_Mutation	G	A	p.Q870X
STAD	TCGA-VQ-A8P2-01	ABI1	ENST00000376170.4,ENST00000376166.1	chr10	27044583:27044670:27047990:27048164:27054146:27054247,27040526:27040712:27047990:27048164:27054146:27054247,	27047991	27048164	27048066	27048066	Nonsense_Mutation	G	A	p.R352X
STAD	TCGA-VQ-A8P2-01	ABI1	ENST00000346832.5	chr10	27044583:27044670:27047990:27048167:27052808:27052889,27044583:27044670:27047990:27048167:27054146:27054247,27040526:27040712:27047990:27048167:27054146:27054247,27040526:27040712:27047990:27048167:27052808:27052889,	27047991	27048167	27048066	27048066	Nonsense_Mutation	G	A	p.R352X
STAD	TCGA-VQ-A8P2-01	HPS5	ENST00000545561.1,ENST00000438420.2,ENST00000349215.3,ENST00000352460.3,ENST00000544218.1,ENST00000396253.3	chr11	18308137:18308257:18309081:18309237:18309439:18309560,	18309082	18309237	18309206	18309206	Nonsense_Mutation	G	A	p.R865X
STAD	TCGA-VQ-A8P2-01	GALM	ENST00000444351.1	chr2	38893384:38893493:38903053:38903208:38908421:38908490,	38903054	38903208	38903119	38903119	Nonsense_Mutation	G	T	p.G86X
STAD	TCGA-VQ-A8P2-01	RNF5	ENST00000487940.1,ENST00000427134.2	chr6	32146273:32146428:32147317:32147336:32147427:32147540,	32147318	32147336	32147321	32147321	Nonsense_Mutation	G	A	p.W48X
STAD	TCGA-VQ-A8P2-01	TRIM36	ENST00000514154.1,ENST00000282369.3,ENST00000513154.1	chr5	114469556:114469844:114472696:114472821:114473059:114473313,	114472697	114472821	114472805	114472805	Nonsense_Mutation	C	A	p.E380X
STAD	TCGA-VQ-A8P2-01	DGKG	ENST00000544847.1,ENST00000490452.1,ENST00000382164.4,ENST00000344484.4,ENST00000265022.3	chr3	185867953:185867977:185879391:185879452:185882686:185882756,	185879392	185879452	185879418	185879418	Nonsense_Mutation	C	A	p.E751X
STAD	TCGA-VQ-A8P2-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219X
STAD	TCGA-VQ-A8P2-01	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219X
STAD	TCGA-VQ-A8P2-01	NAA50	ENST00000493454.1,ENST00000493900.1,ENST00000497525.1,ENST00000240922.3	chr3	113441752:113441819:113442268:113442388:113442805:113442939,	113442269	113442388	113442284	113442284	Nonsense_Mutation	G	A	p.R84X
STAD	TCGA-VQ-A8P2-01	ARHGAP12	ENST00000396144.4,ENST00000375245.4,ENST00000344936.2,ENST00000492028.1,ENST00000375250.5,ENST00000311380.4	chr10	32097576:32097679:32097921:32098056:32098157:32098235,	32097922	32098056	32097970	32097970	Nonsense_Mutation	C	A	p.E739X
STAD	TCGA-VQ-A8P2-01	ABCF2	ENST00000287844.2,ENST00000222388.2	chr7	150912689:150912818:150913052:150913115:150915166:150915277,	150913053	150913115	150913091	150913091	Nonsense_Mutation	G	A	p.R455X
STAD	TCGA-VQ-A8P2-01	MNDA	ENST00000368141.4	chr1	158813068:158813205:158813744:158813912:158815376:158815793,	158813745	158813912	158813829	158813829	Nonsense_Mutation	G	T	p.G163X
STAD	TCGA-VQ-A8P2-01	PKD1	ENST00000480227.1,ENST00000562297.1,ENST00000486339.2,ENST00000487932.1,ENST00000423118.1,ENST00000496574.2,ENST00000262304.4	chr16	2152399:2152634:2152814:2152971:2153266:2153391,	2152815	2152971	2152892	2152892	Nonsense_Mutation	G	T	p.C2957X
STAD	TCGA-VQ-A8P2-01	NMT1	ENST00000592782.1,ENST00000258960.2	chr17	43175749:43175920:43176772:43176881:43180318:43180489,	43176773	43176881	43176870	43176870	Nonsense_Mutation	C	T	p.R328X
STAD	TCGA-VQ-A8P2-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000520548.1,ENST00000424310.2	chr5	158608967:158609059:158621723:158621832:158630441:158630664,	158621724	158621832	158621768	158621768	Nonsense_Mutation	A	T	p.Y113X
STAD	TCGA-VQ-A8P2-01	ATP7B	ENST00000400370.3,ENST00000482841.1,ENST00000242839.4,ENST00000344297.5,ENST00000448424.2,ENST00000400366.3	chr13	52516521:52516690:52518244:52518427:52523797:52523932,52516521:52516690:52518244:52518427:52520419:52520560,	52518245	52518427	52518247	52518247	Nonsense_Mutation	C	A	p.E1081X
STAD	TCGA-VQ-A8P2-01	NCOR1	ENST00000395851.1,ENST00000268712.3	chr17	15983277:15983378:15983721:15983823:15983920:15984041,	15983722	15983823	15983785	15983785	Nonsense_Mutation	G	A	p.R1129X
STAD	TCGA-VQ-A8P2-01	CTSE	ENST00000360218.2,ENST00000432969.2,ENST00000358184.2	chr1	206319100:206319218:206320200:206320319:206325237:206325437,	206320201	206320319	206320269	206320269	Nonsense_Mutation	C	T	p.Q138X
STAD	TCGA-VQ-A8P2-01	LRP6	ENST00000543091.1,ENST00000261349.4,ENST00000538239.1	chr12	12315126:12315353:12317206:12317496:12318012:12318229,	12317207	12317496	12317329	12317329	Nonsense_Mutation	G	A	p.R644X
STAD	TCGA-VQ-A8P2-01	RIN3	ENST00000553959.1	chr14	93125729:93125814:93142877:93142951:93151331:93151495,	93142878	93142951	93142918	93142918	Nonsense_Mutation	G	T	p.E812X
STAD	TCGA-VQ-A8P2-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000556418.1,ENST00000216487.7	chr14	93125729:93125814:93142819:93142951:93151331:93151495,	93142820	93142951	93142918	93142918	Nonsense_Mutation	G	T	p.E812X
STAD	TCGA-VQ-A8P2-01	TTLL7	ENST00000474957.1	chr1	84394818:84394913:84399290:84399449:84464613:84464708,	84399291	84399449	84399300	84399300	Nonsense_Mutation	C	T	p.W346X
STAD	TCGA-VQ-A8P2-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561514	32561514	Nonsense_Mutation	G	T	p.G547X
STAD	TCGA-VQ-A8P2-01	ANO4	ENST00000392977.3,ENST00000392979.3	chr12	101472970:101473053:101477455:101477596:101480437:101480591,	101477456	101477596	101477465	101477465	Nonsense_Mutation	C	T	p.R434X
STAD	TCGA-VQ-A8P2-01	PEX1	ENST00000422866.1,ENST00000541751.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92140893:92141017:92143161:92143281:92146589:92146729,	92143162	92143281	92143170	92143170	Nonsense_Mutation	C	A	p.E451X
STAD	TCGA-VQ-A8P2-01	SNAPC3	ENST00000490969.1,ENST00000467062.1	chr9	15457957:15458065:15459716:15460311:15461628:15461803,	15459717	15460311	15459748	15459748	Nonsense_Mutation	G	T	p.E374X
STAD	TCGA-VQ-A8P2-01	RNF144A	ENST00000320892.6,ENST00000416587.1	chr2	7081078:7081278:7137046:7137192:7154584:7154614,	7137047	7137192	7137148	7137148	Nonsense_Mutation	C	T	p.Q31X
STAD	TCGA-VQ-A8P2-01	MINK1	ENST00000571207.1,ENST00000572330.1,ENST00000347992.7	chr17	4796273:4796362:4796580:4796604:4796728:4796892,	4796581	4796604	4796590	4796590	Nonsense_Mutation	C	T	p.R767X
STAD	TCGA-VQ-A8P2-01	ABHD12	ENST00000339157.5,ENST00000576316.1,ENST00000376542.3	chr20	25284185:25284264:25287468:25287551:25288601:25288669,	25287469	25287551	25287523	25287523	Nonsense_Mutation	C	T	p.W299X
STAD	TCGA-VQ-A8P2-01	MAPKBP1	ENST00000456763.2,ENST00000502292.1,ENST00000457542.2,ENST00000514566.1	chr15	42106747:42106937:42107456:42107603:42107821:42107997,	42107457	42107603	42107546	42107546	Nonsense_Mutation	G	A	p.W426X
STAD	TCGA-VQ-A8P2-01	KIFAP3	ENST00000538366.1	chr1	170015852:170016007:170024445:170024577:170043576:170043729,	170024446	170024577	170024465	170024465	Nonsense_Mutation	G	A	p.R49X
STAD	TCGA-VQ-A8P2-01	PLEKHG2	ENST00000458508.2,ENST00000205135.4,ENST00000409794.3,ENST00000425673.1	chr19	39911922:39911939:39912754:39912928:39913371:39913468,	39912755	39912928	39912908	39912908	Nonsense_Mutation	C	T	p.R553X
STAD	TCGA-VQ-A8P2-01	TFCP2	ENST00000549867.1,ENST00000307660.4,ENST00000548115.1,ENST00000257915.5,ENST00000548108.1	chr12	51510097:51510203:51511453:51511530:51512403:51512555,	51511454	51511530	51511513	51511513	Nonsense_Mutation	G	A	p.R98X
STAD	TCGA-VQ-A8P2-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000565918.1,ENST00000443099.2	chr18	66368981:66369027:66377257:66377381:66378600:66378640,	66377258	66377381	66377367	66377367	Nonsense_Mutation	C	T	p.W52X
STAD	TCGA-VQ-A8P2-01	RACGAP1	ENST00000546786.1	chr12	50396054:50396083:50410413:50410502:50419180:50419221,50399140:50399175:50410413:50410502:50419180:50419221,50400216:50400419:50410413:50410502:50419180:50419221,50400216:50400419:50410413:50410502:50419110:50419183,50399140:50399175:50410413:50410502:50419110:50419183,	50410414	50410502	50410414	50410414	Nonsense_Mutation	G	A	p.Q29X
STAD	TCGA-VQ-A8P2-01	RACGAP1	ENST00000548824.1	chr12	50400216:50400419:50410413:50410498:50419110:50419183,50400216:50400419:50410413:50410498:50419180:50419221,50400216:50400419:50410413:50410498:50419155:50419217,	50410414	50410498	50410414	50410414	Nonsense_Mutation	G	A	p.Q29X
STAD	TCGA-VQ-A8P2-01	FRMD6	ENST00000554167.1,ENST00000344768.5,ENST00000554495.1,ENST00000395718.2,ENST00000356218.4	chr14	52171466:52171653:52174795:52174951:52178248:52178314,	52174796	52174951	52174910	52174910	Nonsense_Mutation	C	T	p.R225X
STAD	TCGA-VQ-A8P2-01	NOD2	ENST00000300589.2,ENST00000527070.1	chr16	50733398:50733865:50741765:50741871:50744468:50744702,	50741766	50741871	50741838	50741838	Nonsense_Mutation	G	T	p.E205X
STAD	TCGA-VQ-A8P2-01	AFAP1L2	ENST00000304129.4,ENST00000545353.1,ENST00000369271.3,ENST00000491814.1	chr10	116059952:116060121:116060203:116060449:116061112:116061224,	116060204	116060449	116060389	116060389	Nonsense_Mutation	G	A	p.R535X
STAD	TCGA-VQ-A8P2-01	EDNRA	ENST00000339690.5,ENST00000510697.1,ENST00000503721.1,ENST00000506066.1,ENST00000511804.1,ENST00000324300.5,ENST00000358556.4	chr4	148457028:148457181:148460968:148461102:148461528:148461637,	148460969	148461102	148461086	148461086	Nonsense_Mutation	C	T	p.R340X
STAD	TCGA-VQ-A8P2-01	DPY19L4	ENST00000414645.2	chr8	95773929:95774062:95777410:95777542:95777938:95778037,	95777411	95777542	95777453	95777453	Nonsense_Mutation	G	T	p.G305X
STAD	TCGA-VQ-A8P2-01	TAPBPL	ENST00000266556.7,ENST00000543567.1,ENST00000539384.1,ENST00000545700.1	chr12	6562232:6562463:6562612:6562882:6566571:6566709,	6562613	6562882	6562830	6562830	Nonsense_Mutation	G	A	p.W171X
STAD	TCGA-VQ-A8P2-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35270299:35270399:35272059:35272194:35276656:35276744,	35272060	35272194	35272164	35272164	Nonsense_Mutation	C	A	p.E253X
STAD	TCGA-VQ-A8P2-01	SLC41A3	ENST00000513723.1	chr3	125769785:125769893:125775200:125775356:125786789:125787023,	125775201	125775356	125775344	125775344	Nonsense_Mutation	G	A	p.R18X
STAD	TCGA-VQ-A8P2-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234463	95234463	Nonsense_Mutation	G	A	p.R336X
STAD	TCGA-VQ-A8P2-01	RNF43	ENST00000583753.1,ENST00000577716.1,ENST00000500597.2,ENST00000584437.1,ENST00000581868.1,ENST00000577625.1,ENST00000407977.2	chr17	56439904:56440009:56440635:56440767:56440886:56440953,	56440636	56440767	56440741	56440741	Nonsense_Mutation	C	T	p.W159X
STAD	TCGA-VQ-A8P2-01	CDHR3	ENST00000478080.1,ENST00000317716.9,ENST00000542731.1	chr7	105656372:105656471:105658291:105658518:105660818:105660990,	105658292	105658518	105658315	105658315	Nonsense_Mutation	C	T	p.R484X
STAD	TCGA-VQ-A8P2-01	CALML4	ENST00000467889.1	chr15	68489777:68489966:68491878:68492019:68497458:68497489,	68491879	68492019	68491894	68491894	Nonsense_Mutation	G	A	p.Q97X
STAD	TCGA-VQ-A8P2-01	HHAT	ENST00000391905.3,ENST00000537898.1,ENST00000261458.3	chr1	210501595:210501728:210522276:210522410:210536195:210536263,210502296:210502448:210522276:210522410:210560811:210560925,210502296:210502448:210522276:210522410:210536195:210536263,	210522277	210522410	210522329	210522329	Nonsense_Mutation	C	T	p.R4X
STAD	TCGA-VQ-A8P2-01	FDPS	ENST00000465559.1,ENST00000447866.1,ENST00000468479.1,ENST00000489003.1,ENST00000461507.1,ENST00000495308.1,ENST00000491013.1,ENST00000467076.1,ENST00000470171.1,ENST00000477057.1,ENST00000356657.6,ENST00000368356.4	chr1	155278704:155278756:155282045:155282186:155287731:155287773,155279854:155279996:155282045:155282186:155287731:155287773,	155282046	155282186	155282162	155282162	Nonsense_Mutation	G	A	p.W152X
STAD	TCGA-VQ-A8P2-01	SEZ6	ENST00000317338.12,ENST00000335960.6,ENST00000442608.3	chr17	27306697:27306831:27308388:27309057:27332832:27332931,	27308389	27309057	27308956	27308956	Nonsense_Mutation	G	A	p.R53X
STAD	TCGA-VQ-A8P2-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014243	28014243	Nonsense_Mutation	G	A	p.R115X
STAD	TCGA-VQ-A8P2-01	ING3	ENST00000315870.5,ENST00000431467.1	chr7	120595612:120595678:120604795:120604892:120606679:120606751,	120604796	120604892	120604802	120604802	Nonsense_Mutation	C	T	p.R92X
STAD	TCGA-VQ-A8P2-01	DDR2	ENST00000367921.3,ENST00000367922.3	chr1	162741813:162742037:162743258:162743386:162745441:162745633,	162743259	162743386	162743361	162743361	Nonsense_Mutation	C	T	p.R611X
STAD	TCGA-VQ-A8P2-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855870	100855870	Nonsense_Mutation	G	A	p.Q316X
STAD	TCGA-VQ-A8P2-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472435	92472435	Nonsense_Mutation	G	A	p.Q629X
STAD	TCGA-VQ-A8P2-01	TTI2	ENST00000360742.5,ENST00000431156.2	chr8	33364746:33364839:33367263:33367450:33369484:33370230,	33367264	33367450	33367405	33367405	Nonsense_Mutation	C	T	p.W231X
STAD	TCGA-VQ-A8P2-01	MASP2	ENST00000400897.3	chr1	11094884:11094963:11097749:11097868:11102931:11103079,	11097750	11097868	11097752	11097752	Nonsense_Mutation	G	A	p.Q336X
STAD	TCGA-VQ-A8P2-01	TRAPPC12	ENST00000473348.1,ENST00000437733.1,ENST00000382110.2,ENST00000461577.1,ENST00000497597.1,ENST00000324266.5	chr2	3476191:3476373:3481465:3481566:3482616:3482642,3469367:3469466:3481465:3481566:3482616:3482642,	3481466	3481566	3481520	3481520	Nonsense_Mutation	C	T	p.Q611X
STAD	TCGA-VQ-A8P2-01	TRAPPC12	ENST00000415624.1	chr2	3469367:3469466:3481462:3481566:3482616:3482642,	3481463	3481566	3481520	3481520	Nonsense_Mutation	C	T	p.Q611X
STAD	TCGA-VQ-A8P2-01	EPB41L3	ENST00000540638.2,ENST00000400111.3,ENST00000545076.1,ENST00000542652.2	chr18	5396199:5396331:5397056:5397425:5406775:5406967,	5397057	5397425	5397122	5397122	Nonsense_Mutation	G	A	p.R926X
STAD	TCGA-VQ-A8P2-01	ATXN3	ENST00000556374.1,ENST00000554214.1,ENST00000555816.1,ENST00000393287.5,ENST00000555958.1,ENST00000340660.6,ENST00000556315.1,ENST00000553287.1,ENST00000555381.1,ENST00000359366.5,ENST00000545170.1,ENST00000554040.1,ENST00000554592.1,ENST00000502250.1,ENST00000429774.2,ENST00000554672.1,ENST00000532032.1,ENST00000554491.1,ENST00000556082.1,ENST00000503767.1,ENST00000553309.1	chr14	92549469:92549579:92555073:92555161:92559595:92559662,92549469:92549602:92555073:92555161:92562436:92562481,92549469:92549602:92555073:92555161:92559595:92559662,	92555074	92555161	92555089	92555089	Nonsense_Mutation	G	A	p.Q154X
STAD	TCGA-VQ-A8P2-01	CDH12	ENST00000504376.2,ENST00000521384.1,ENST00000522262.1,ENST00000382254.1,ENST00000517378.1	chr5	21765086:21765208:21783466:21783603:21802275:21802529,	21783467	21783603	21783500	21783500	Nonsense_Mutation	G	A	p.Q454X
STAD	TCGA-VQ-A8P2-01	SLC4A7	ENST00000437266.1,ENST00000440156.1,ENST00000454389.1,ENST00000425128.2,ENST00000428386.1,ENST00000455077.1,ENST00000419036.1,ENST00000437179.1,ENST00000295736.5,ENST00000428179.1,ENST00000457377.1,ENST00000438530.1,ENST00000446700.1,ENST00000388777.4,ENST00000435667.2,ENST00000445684.1	chr3	27436008:27436260:27436444:27436606:27439174:27439288,	27436445	27436606	27436567	27436567	Nonsense_Mutation	C	A	p.G906X
STAD	TCGA-VQ-A8P2-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829761	72829761	Nonsense_Mutation	G	A	p.Q2274X
STAD	TCGA-VQ-A8P2-01	RANGRF	ENST00000580434.1	chr17	8192273:8192390:8192575:8192732:8193130:8193410,	8192576	8192732	8192690	8192690	Nonsense_Mutation	G	A	p.W103X
STAD	TCGA-VQ-A8P2-01	SP140	ENST00000392045.3,ENST00000420434.3	chr2	231109702:231109795:231110577:231110655:231113599:231113683,231109702:231109786:231110577:231110655:231113599:231113683,231109702:231109795:231110577:231110655:231112630:231112780,	231110578	231110655	231110598	231110598	Nonsense_Mutation	C	T	p.Q229X
STAD	TCGA-VQ-A8P2-01	EED	ENST00000263360.6,ENST00000327320.4,ENST00000534564.1,ENST00000525244.1	chr11	85977124:85977258:85979497:85979603:85988021:85988180,	85979498	85979603	85979574	85979574	Nonsense_Mutation	C	T	p.R313X
STAD	TCGA-VQ-A8P2-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139629156:139629201:139631697:139631751:139635974:139636028,	139631698	139631751	139631709	139631709	Nonsense_Mutation	G	A	p.R1272X
STAD	TCGA-VQ-A8P2-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911640	74911640	Nonsense_Mutation	C	T	p.R183X
STAD	TCGA-VQ-A8P2-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39713791:39713815:39716469:39716684:39719640:39719695,	39716470	39716684	39716543	39716543	Nonsense_Mutation	C	A	p.E1200X
STAD	TCGA-VQ-A8P2-01	KIF21A	ENST00000547108.1	chr12	39713791:39713815:39715149:39716684:39719640:39719695,	39715150	39716684	39716543	39716543	Nonsense_Mutation	C	A	p.E1200X
STAD	TCGA-VQ-A8P2-01	RPAP1	ENST00000304330.4	chr15	41810203:41810380:41812588:41813345:41813935:41813989,	41812589	41813345	41813152	41813152	Nonsense_Mutation	G	A	p.R1078X
STAD	TCGA-VQ-A8P2-01	RRP36	ENST00000607394.1	chr6	42995097:42995215:42996829:42996928:43001590:43001709,	42996830	42996928	42996916	42996916	Nonsense_Mutation	C	T	p.R244X
STAD	TCGA-VQ-A8P2-01	SORD	ENST00000559230.1	chr15	45335454:45335619:45353179:45353424:45357468:45357587,	45353180	45353424	45353327	45353327	Nonsense_Mutation	C	T	p.R110X
STAD	TCGA-VQ-A8P2-01	SORD	ENST00000558580.1,ENST00000267814.9	chr15	45335454:45335619:45353264:45353424:45357468:45357587,	45353265	45353424	45353327	45353327	Nonsense_Mutation	C	T	p.R110X
STAD	TCGA-VQ-A8P2-01	CYB5B	ENST00000515314.1	chr16	69458751:69458760:69481052:69481181:69496332:69497681,	69481053	69481181	69481062	69481062	Nonsense_Mutation	G	T	p.G62X
STAD	TCGA-VQ-A8P2-01	CAND1	ENST00000540319.1,ENST00000545606.1	chr12	67696102:67696395:67698384:67698526:67698883:67699092,	67698385	67698526	67698442	67698442	Nonsense_Mutation	C	T	p.R451X
STAD	TCGA-VQ-A8P2-01	MDM1	ENST00000303145.7,ENST00000545724.1,ENST00000411698.2,ENST00000430606.2	chr12	68718784:68721290:68724886:68725001:68726007:68726035,68720436:68720801:68724886:68725001:68726007:68726035,	68724887	68725001	68724912	68724912	Nonsense_Mutation	C	T	p.W36X
STAD	TCGA-VQ-A8P2-01	KLHL32	ENST00000369261.4,ENST00000536676.1,ENST00000539200.1	chr6	97533163:97533217:97561658:97562385:97575279:97575338,	97561659	97562385	97562309	97562309	Nonsense_Mutation	G	A	p.W426X
STAD	TCGA-VQ-A8P2-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92118685:92118737:92119027:92119225:92120585:92120816,	92119028	92119225	92119117	92119117	Nonsense_Mutation	C	A	p.E1183X
STAD	TCGA-VQ-A8P2-01	PEX1	ENST00000496420.1	chr7	92118685:92118737:92119032:92119225:92120585:92120816,	92119033	92119225	92119117	92119117	Nonsense_Mutation	C	A	p.E1183X
STAD	TCGA-VQ-A8P2-01	ASAP1	ENST00000520342.1,ENST00000521075.1,ENST00000357668.1,ENST00000520927.1,ENST00000519169.1,ENST00000518721.1,ENST00000524367.1	chr8	131200354:131200429:131226801:131226947:131249167:131249240,	131226802	131226947	131226882	131226882	Nonsense_Mutation	G	A	p.R109X
STAD	TCGA-VQ-A8P2-01	BAZ1A	ENST00000555273.1,ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35252324:35252438:35252967:35253133:35254982:35255207,	35252968	35253133	35253041	35253041	Nonsense_Mutation	G	A	p.R642X
STAD	TCGA-VQ-A8P2-01	SLC19A3	ENST00000258403.3,ENST00000425817.1	chr2	228560604:228560797:228563451:228564280:228566884:228567036,	228563452	228564280	228564103	228564103	Nonsense_Mutation	C	A	p.E110X
STAD	TCGA-VQ-A8P2-01	PNLDC1	ENST00000392167.3,ENST00000275275.5,ENST00000610273.1	chr6	160239586:160239686:160239977:160240153:160240285:160240384,	160239978	160240153	160240107	160240107	Nonsense_Mutation	C	T	p.R452X
STAD	TCGA-VQ-A8P2-01	RSL1D1	ENST00000542106.1,ENST00000396503.3	chr16	11940590:11940700:11941524:11941663:11944135:11944270,11940590:11940700:11941524:11941663:11945264:11945365,	11941525	11941663	11941644	11941644	Nonsense_Mutation	G	A	p.R89X
STAD	TCGA-VQ-A8P2-01	BTN3A2	ENST00000524682.1	chr6	26368948:26369140:26370549:26370831:26373124:26373170,26368948:26369140:26370549:26370831:26373503:26373524,	26370550	26370831	26370653	26370653	Nonsense_Mutation	G	A	p.W179X
STAD	TCGA-VQ-A8P2-01	ZKSCAN3	ENST00000377255.3	chr6	28318048:28318165:28327301:28327765:28329100:28329248,	28327302	28327765	28327577	28327577	Nonsense_Mutation	C	T	p.R72X
STAD	TCGA-VQ-A8P2-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000487821.1	chr3	33870344:33870461:33877535:33877758:33879695:33879733,	33877536	33877758	33877665	33877665	Nonsense_Mutation	C	T	p.R327X
STAD	TCGA-R5-A7ZR-01	NRG1	ENST00000405005.3,ENST00000521670.1,ENST00000522402.1	chr8	32585466:32585596:32599525:32599593:32600192:32600251,32585466:32585596:32599525:32599593:32611889:32611941,	32599526	32599593	32599536	32599536	Nonsense_Mutation	G	T	p.G215X
STAD	TCGA-R5-A7ZR-01	HSPH1	ENST00000445273.2,ENST00000320027.5,ENST00000380405.4,ENST00000429785.2,ENST00000602786.1,ENST00000380406.5	chr13	31722095:31722229:31722510:31722617:31724090:31724319,	31722511	31722617	31722526	31722526	Nonsense_Mutation	G	C	p.S410X
STAD	TCGA-RD-A8N9-01	PSG8	ENST00000600709.1	chr19	43256878:43257528:43258484:43258739:43262153:43262432,	43258485	43258739	43258532	43258532	Nonsense_Mutation	G	T	p.S399X
STAD	TCGA-B7-A5TJ-01	TEX10	ENST00000429235.1,ENST00000535814.1,ENST00000374902.4	chr9	103091467:103091557:103092212:103092451:103102538:103102651,	103092213	103092451	103092225	103092225	Nonsense_Mutation	G	A	p.Q496X
STAD	TCGA-B7-A5TJ-01	TRIM31	ENST00000376734.3,ENST00000540829.1	chr6	30078224:30078455:30079424:30079520:30080165:30080252,	30079425	30079520	30079499	30079499	Nonsense_Mutation	G	A	p.Q147X
STAD	TCGA-VQ-A91V-01	GINS1	ENST00000262460.4	chr20	25397739:25397838:25398740:25398831:25405846:25405963,	25398741	25398831	25398808	25398808	Nonsense_Mutation	C	T	p.R103X
STAD	TCGA-VQ-A91V-01	ORC2	ENST00000234296.2	chr2	201791490:201791623:201796061:201796171:201798598:201798697,	201796062	201796171	201796105	201796105	Nonsense_Mutation	G	A	p.Q292X
STAD	TCGA-VQ-A91V-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128410834:128411137:128505576:128505870:128540066:128540241,	128505577	128505870	128505687	128505687	Nonsense_Mutation	C	T	p.W351X
STAD	TCGA-R5-A7ZF-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189859449:189859557:189859771:189859825:189860417:189860516,	189859772	189859825	189859787	189859787	Nonsense_Mutation	C	T	p.R491X
STAD	TCGA-R5-A7ZF-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198X
STAD	TCGA-R5-A7ZF-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000550859.1,ENST00000267064.4,ENST00000550164.1	chr12	56578627:56578720:56578813:56578895:56579938:56580024,	56578814	56578895	56578895	56578895	Nonsense_Mutation	C	T	p.W106X
STAD	TCGA-R5-A7ZF-01	TROVE2	ENST00000400968.2,ENST00000367445.3,ENST00000367444.3,ENST00000367441.1,ENST00000416058.2,ENST00000367446.3,ENST00000367443.1	chr1	193028788:193028906:193044949:193045170:193045630:193045777,193038361:193038764:193044949:193045170:193045630:193045777,	193044950	193045170	193045046	193045046	Nonsense_Mutation	T	G	p.L226X
STAD	TCGA-VQ-A8PE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
STAD	TCGA-VQ-A8PE-01	SYNCRIP	ENST00000355238.6,ENST00000369622.3	chr6	86328535:86328657:86328985:86329135:86332199:86332405,	86328986	86329135	86329066	86329066	Nonsense_Mutation	G	A	p.Q360X
STAD	TCGA-VQ-A8PE-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067292	62067292	Nonsense_Mutation	G	A	p.R283X
STAD	TCGA-VQ-A8PE-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067292	62067292	Nonsense_Mutation	G	A	p.R283X
STAD	TCGA-IN-A7NU-01	ACAT2	ENST00000367048.4,ENST00000467951.1,ENST00000541436.1	chr6	160183950:160184085:160188036:160188218:160189542:160189660,	160188037	160188218	160188041	160188041	Nonsense_Mutation	T	A	p.C65X
STAD	TCGA-IN-A7NU-01	NUCB2	ENST00000323688.6,ENST00000529010.1,ENST00000529313.1,ENST00000458064.2,ENST00000533773.1,ENST00000530527.1	chr11	17317650:17317758:17323290:17323417:17331118:17331222,	17323291	17323417	17323309	17323309	Nonsense_Mutation	G	T	p.E91X
STAD	TCGA-SW-A7EA-01	ANKRD27	ENST00000586693.3,ENST00000590519.2,ENST00000587352.1,ENST00000306065.4	chr19	33135230:33135385:33140587:33140698:33149819:33149951,33137509:33137521:33140587:33140698:33149819:33149951,	33140588	33140698	33140670	33140670	Nonsense_Mutation	G	T	p.S44X
STAD	TCGA-SW-A7EA-01	TTC7B	ENST00000328459.6,ENST00000555894.1	chr14	91059829:91059970:91077085:91077183:91084272:91084367,	91077086	91077183	91077134	91077134	Nonsense_Mutation	G	A	p.R640X
STAD	TCGA-SW-A7EA-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971139	21971139	Nonsense_Mutation	G	A	p.R88X
STAD	TCGA-SW-A7EA-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971139	21971139	Nonsense_Mutation	G	A	p.R88X
STAD	TCGA-VQ-AA6I-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
STAD	TCGA-VQ-AA6I-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80X
STAD	TCGA-VQ-AA6I-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913474	129913474	Nonsense_Mutation	G	A	p.R400X
STAD	TCGA-D7-A6EY-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1	chr2	48045917:48046003:48046094:48046217:48047500:48047595,	48046095	48046217	48046160	48046160	Nonsense_Mutation	C	A	p.G619X
STAD	TCGA-D7-A6EY-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53664461:53664582:53666504:53666641:53668600:53668736,	53666505	53666641	53666523	53666523	Nonsense_Mutation	T	A	p.L463X
STAD	TCGA-D7-A6EY-01	STAT6	ENST00000554764.1,ENST00000543873.2,ENST00000300134.3,ENST00000454075.3,ENST00000538913.2,ENST00000555318.1,ENST00000537215.2,ENST00000556155.1	chr12	57492797:57492861:57493076:57493223:57493549:57493577,	57493077	57493223	57493155	57493155	Nonsense_Mutation	G	A	p.R605X
STAD	TCGA-D7-A6EY-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000231229.4,ENST00000508408.1,ENST00000340184.4,ENST00000505126.1	chr5	180375919:180375946:180376238:180376265:180376903:180377598,	180376239	180376265	180376246	180376246	Nonsense_Mutation	A	T	p.R325X
STAD	TCGA-D7-A6EY-01	NECAP2	ENST00000406746.1,ENST00000457722.2,ENST00000443980.2,ENST00000496239.1,ENST00000459640.1,ENST00000492095.1,ENST00000337132.5	chr1	16774364:16774469:16774554:16774636:16775587:16775693,	16774555	16774636	16774557	16774557	Nonsense_Mutation	C	T	p.R101X
STAD	TCGA-D7-A6EY-01	NDUFAF7	ENST00000483999.1	chr2	37464899:37464978:37468720:37468934:37469777:37469836,	37468721	37468934	37468910	37468910	Nonsense_Mutation	C	T	p.R200X
STAD	TCGA-D7-A6EY-01	SEPT6	ENST00000343984.5	chrX	118759297:118759342:118763280:118763471:118767322:118767387,118752675:118752749:118763280:118763471:118767322:118767387,	118763281	118763471	118763372	118763372	Nonsense_Mutation	T	A	p.K397X
STAD	TCGA-D7-A6EY-01	RFTN1	ENST00000451036.1,ENST00000441460.1,ENST00000431547.1,ENST00000334133.4,ENST00000449415.1	chr3	16450979:16450990:16475357:16475544:16535231:16535384,	16475358	16475544	16475359	16475359	Nonsense_Mutation	T	A	p.R111X
STAD	TCGA-D7-A6EY-01	FOXN2	ENST00000413569.1,ENST00000340553.3	chr2	48586185:48586286:48589781:48589846:48600430:48600467,	48589782	48589846	48589834	48589834	Nonsense_Mutation	C	T	p.R231X
STAD	TCGA-FP-A9TM-01	GLI3	ENST00000479210.1,ENST00000395925.3	chr7	42007193:42007521:42011935:42012226:42017156:42017321,	42011936	42012226	42011986	42011986	Nonsense_Mutation	T	A	p.K685X
STAD	TCGA-FP-A9TM-01	TRAPPC3	ENST00000373163.1,ENST00000373162.1,ENST00000373166.3	chr1	36602862:36602923:36603396:36603579:36605320:36605420,	36603397	36603579	36603533	36603533	Nonsense_Mutation	C	T	p.W104X
STAD	TCGA-IN-A6RP-01	SLC6A15	ENST00000450363.3,ENST00000266682.5	chr12	85279689:85279847:85285610:85286087:85306301:85306484,	85285611	85286087	85285644	85285644	Nonsense_Mutation	G	A	p.R86X
STAD	TCGA-IN-A6RP-01	FHOD3	ENST00000592128.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34335081:34335274:34340570:34340745:34349227:34349389,	34340571	34340745	34340742	34340742	Nonsense_Mutation	C	T	p.R1358X
STAD	TCGA-IN-A6RP-01	ATR	ENST00000350721.4,ENST00000515863.1,ENST00000383101.3	chr3	142274911:142274981:142275224:142275417:142277465:142277618,	142275225	142275417	142275400	142275400	Nonsense_Mutation	G	A	p.R635X
STAD	TCGA-D7-A74A-01	EIF3E	ENST00000521614.1,ENST00000522352.1,ENST00000220849.5,ENST00000519030.1	chr8	109214093:109214152:109215211:109215346:109215629:109215732,	109215212	109215346	109215229	109215229	Nonsense_Mutation	G	A	p.Q428X
STAD	TCGA-D7-A74A-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62066569	62066569	Nonsense_Mutation	C	A	p.E524X
STAD	TCGA-D7-A74A-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62066569	62066569	Nonsense_Mutation	C	A	p.E524X
STAD	TCGA-R5-A7ZE-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60518101:60518117:60522197:60522304:60525061:60525127,	60522198	60522304	60522259	60522259	Nonsense_Mutation	C	T	p.R291X
STAD	TCGA-R5-A7ZE-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47125209:47125872:47127684:47127804:47129602:47129737,	47127685	47127804	47127693	47127693	Nonsense_Mutation	G	A	p.Q1797X
STAD	TCGA-D7-A748-01	MARCO	ENST00000327097.4,ENST00000541757.1	chr2	119749352:119749451:119750007:119750052:119750699:119750876,	119750008	119750052	119750046	119750046	Nonsense_Mutation	G	T	p.E416X
STAD	TCGA-RD-A8N6-01	MEIOB	ENST00000325962.3,ENST00000397344.3,ENST00000412554.2,ENST00000470044.1,ENST00000452149.2	chr16	1891820:1891974:1894862:1894964:1903039:1903135,	1894863	1894964	1894929	1894929	Nonsense_Mutation	G	A	p.R272X
STAD	TCGA-RD-A8N6-01	GINM1	ENST00000367419.5	chr6	149901728:149901859:149903575:149903739:149911862:149912884,	149903576	149903739	149903626	149903626	Nonsense_Mutation	G	A	p.W256X
STAD	TCGA-RD-A8N6-01	KCTD19	ENST00000304372.5,ENST00000570049.1,ENST00000566392.1	chr16	67328875:67328959:67329165:67329308:67330061:67330162,	67329166	67329308	67329221	67329221	Nonsense_Mutation	G	A	p.R446X
STAD	TCGA-KB-A6F7-01	CSGALNACT1	ENST00000397998.3,ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000519222.1	chr8	19315936:19316153:19362711:19363641:19459281:19459376,	19362712	19363641	19362917	19362917	Nonsense_Mutation	A	T	p.Y143X
STAD	TCGA-F1-A72C-01	CHCHD3	ENST00000448878.1,ENST00000496427.1,ENST00000262570.5,ENST00000476546.1	chr7	132470285:132470421:132481202:132481338:132523158:132523229,	132481203	132481338	132481337	132481337	Nonsense_Mutation	G	A	p.R176X
STAD	TCGA-VQ-AA64-01	FOXK1	ENST00000446823.1,ENST00000328914.4	chr7	4794867:4795014:4796624:4796818:4798681:4798848,	4796625	4796818	4796712	4796712	Nonsense_Mutation	C	T	p.R380X
STAD	TCGA-VQ-AA64-01	PALB2	ENST00000261584.4,ENST00000568219.1	chr16	23637556:23637718:23640524:23640596:23640960:23641790,	23640525	23640596	23640533	23640533	Nonsense_Mutation	C	A	p.E860X
STAD	TCGA-VQ-AA64-01	TGFBRAP1	ENST00000258449.1,ENST00000393359.2	chr2	105896838:105897180:105900772:105900855:105912812:105912967,	105900773	105900855	105900792	105900792	Nonsense_Mutation	C	A	p.E368X
STAD	TCGA-VQ-AA64-01	CRLF3	ENST00000578692.1,ENST00000544695.1,ENST00000324238.6	chr17	29119457:29119590:29120467:29120690:29123177:29123355,	29120468	29120690	29120654	29120654	Nonsense_Mutation	G	A	p.Q214X
STAD	TCGA-SW-A7EB-01	PTDSS1	ENST00000337004.4,ENST00000518776.1,ENST00000517309.1,ENST00000522072.1,ENST00000455950.2	chr8	97307419:97307484:97311921:97312073:97316267:97316385,	97311922	97312073	97311962	97311962	Nonsense_Mutation	G	A	p.W214X
STAD	TCGA-IN-A6RR-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224537	51224537	Nonsense_Mutation	G	A	p.Q1071X
STAD	TCGA-D7-A6ET-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453329	195453329	Nonsense_Mutation	C	T	p.R448X
STAD	TCGA-RD-A7C1-01	ST6GAL1	ENST00000169298.3,ENST00000448044.1	chr3	186756529:186756661:186760441:186761098:186769036:186769134,	186760442	186761098	186761057	186761057	Nonsense_Mutation	C	G	p.S189X
STAD	TCGA-RD-A7C1-01	ANKMY1	ENST00000405002.1,ENST00000462004.1,ENST00000496300.1,ENST00000464991.1	chr2	241492450:241492474:241494282:241494472:241500147:241500185,	241494283	241494472	241494402	241494402	Nonsense_Mutation	C	A	p.E73X
STAD	TCGA-RD-A7C1-01	PHLPP2	ENST00000567016.1,ENST00000393524.2,ENST00000568954.1,ENST00000356272.3,ENST00000360429.3,ENST00000538126.1	chr16	71724421:71724612:71736500:71736634:71748414:71748704,	71736501	71736634	71736549	71736549	Nonsense_Mutation	C	A	p.E124X
STAD	TCGA-D7-A6EX-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000505747.1	chr2	39996040:39996233:39996849:39997259:39998644:39998780,39995563:39995641:39996849:39997259:39998644:39998780,	39996850	39997259	39996960	39996960	Nonsense_Mutation	C	A	p.E188X
STAD	TCGA-D7-A6EX-01	THUMPD2	ENST00000530522.1	chr2	39995563:39995641:39996897:39997259:39998654:39998780,	39996898	39997259	39996960	39996960	Nonsense_Mutation	C	A	p.E188X
STAD	TCGA-D7-A6EX-01	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9520869:9520937:9525373:9525487:9528422:9528675,	9525374	9525487	9525431	9525431	Nonsense_Mutation	C	T	p.R692X
STAD	TCGA-D7-A6EV-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58439374	58439374	Nonsense_Mutation	T	A	p.K59X
STAD	TCGA-D7-A6EV-01	ZNF418	ENST00000600989.1	chr19	58434559:58434657:58439344:58439415:58441795:58441880,	58439345	58439415	58439374	58439374	Nonsense_Mutation	T	A	p.K59X
STAD	TCGA-VQ-A92D-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332856	175332856	Nonsense_Mutation	G	A	p.R899X
STAD	TCGA-VQ-A92D-01	RNF216	ENST00000425013.2	chr7	5778906:5778983:5780603:5781275:5792476:5792610,	5780604	5781275	5780662	5780662	Nonsense_Mutation	C	T	p.W329X
STAD	TCGA-VQ-A92D-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5780662	5780662	Nonsense_Mutation	C	T	p.W329X
STAD	TCGA-VQ-AA6G-01	HLA-F	ENST00000606273.1	chr6	29692193:29692225:29692807:29693083:29693223:29693340,29692193:29692225:29692807:29693083:29693228:29693340,	29692808	29693083	29693082	29693082	Nonsense_Mutation	G	A	p.W295X
STAD	TCGA-VQ-AA6G-01	POMGNT1	ENST00000371992.1,ENST00000535522.1,ENST00000371984.3,ENST00000371986.3	chr1	46659945:46660073:46660224:46660323:46660515:46660633,	46660225	46660323	46660274	46660274	Nonsense_Mutation	C	T	p.W234X
STAD	TCGA-VQ-AA6G-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177034089	177034089	Nonsense_Mutation	G	T	p.G83X
STAD	TCGA-VQ-AA6G-01	IPO13	ENST00000372343.3,ENST00000492152.1	chr1	44422231:44422373:44422481:44422648:44422866:44422987,	44422482	44422648	44422612	44422612	Nonsense_Mutation	G	A	p.W412X
STAD	TCGA-IN-A6RS-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000396104.2	chr16	20491894:20492022:20492143:20492243:20494379:20494499,	20492144	20492243	20492161	20492161	Nonsense_Mutation	C	A	p.S476X
STAD	TCGA-VQ-A91Q-01	ARHGAP25	ENST00000473986.1	chr2	69034404:69034612:69040420:69040551:69043420:69043494,	69040421	69040551	69040465	69040465	Nonsense_Mutation	C	T	p.R241X
STAD	TCGA-VQ-A91Q-01	ARHGAP25	ENST00000497259.1,ENST00000497079.1,ENST00000409030.3,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1,ENST00000488795.1	chr2	69034407:69034612:69040418:69040551:69043420:69043494,	69040419	69040551	69040465	69040465	Nonsense_Mutation	C	T	p.R241X
STAD	TCGA-VQ-A91Q-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10091145:10091189:10094070:10094181:10101977:10102087,	10094071	10094181	10094104	10094104	Nonsense_Mutation	C	T	p.Q527X
STAD	TCGA-VQ-A91Q-01	MS4A4A	ENST00000532114.1,ENST00000337908.4,ENST00000355131.3,ENST00000529950.1,ENST00000343968.4,ENST00000395016.3	chr11	60059697:60059857:60064669:60064798:60068473:60068530,	60064670	60064798	60064785	60064785	Nonsense_Mutation	G	A	p.W106X
STAD	TCGA-VQ-A91Q-01	PDGFRA	ENST00000508170.1,ENST00000504461.1,ENST00000512522.1,ENST00000503856.1,ENST00000509490.1,ENST00000257290.5	chr4	55124923:55124984:55127261:55127579:55129833:55130094,	55127262	55127579	55127506	55127506	Nonsense_Mutation	C	A	p.Y98X
STAD	TCGA-IN-A6RI-01	NTHL1	ENST00000566380.1	chr16	2093567:2093727:2096128:2096367:2097709:2097744,	2096129	2096367	2096247	2096247	Nonsense_Mutation	C	T	p.W87X
STAD	TCGA-VQ-AA6K-01	BCAT1	ENST00000539780.1	chr12	25034234:25034345:25047208:25047409:25054747:25054819,25034234:25034345:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25054747:25054819,	25047209	25047409	25047302	25047302	Nonsense_Mutation	C	T	p.W74X
STAD	TCGA-MX-A666-01	CUX2	ENST00000397643.3,ENST00000261726.6	chr12	111701564:111701643:111729221:111729356:111731249:111731373,	111729222	111729356	111729305	111729305	Nonsense_Mutation	C	T	p.R129X
STAD	TCGA-BR-8365-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102566729:102566821:102572327:102572380:102603979:102604112,	102572328	102572380	102572363	102572363	Nonsense_Mutation	G	A	p.Q248X
STAD	TCGA-CD-8536-01	DCAF13	ENST00000518554.1,ENST00000519682.1	chr8	104427639:104427744:104432491:104432691:104438283:104438373,104427639:104427744:104432491:104432691:104433202:104433310,	104432492	104432691	104432575	104432575	Nonsense_Mutation	C	T	p.R204X
STAD	TCGA-CD-8536-01	LUZP4	ENST00000371920.3	chrX	114536556:114536688:114537864:114537983:114540769:114542119,	114537865	114537983	114537966	114537966	Nonsense_Mutation	C	T	p.Q109X
STAD	TCGA-CD-8536-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	624006	624006	Nonsense_Mutation	T	A	p.K116X
STAD	TCGA-CD-8536-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54319086:54319300:54324819:54324957:54325468:54325569,	54324820	54324957	54324830	54324830	Nonsense_Mutation	C	T	p.R504X
STAD	TCGA-CD-8536-01	GUSB	ENST00000304895.4,ENST00000345660.6,ENST00000478118.1	chr7	65444464:65444528:65444713:65444898:65445210:65445392,	65444714	65444898	65444731	65444731	Nonsense_Mutation	G	T	p.Y188X
STAD	TCGA-CD-8536-01	TRUB1	ENST00000485065.1	chr10	116698144:116698298:116702403:116702502:116710852:116710908,	116702404	116702502	116702490	116702490	Nonsense_Mutation	C	T	p.R125X
STAD	TCGA-CD-8536-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39831063	39831063	Nonsense_Mutation	G	A	p.R832X
STAD	TCGA-CD-8536-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39831063	39831063	Nonsense_Mutation	G	A	p.R832X
STAD	TCGA-BR-8589-01	ART3	ENST00000355810.4,ENST00000341029.5,ENST00000513494.1,ENST00000349321.3	chr4	76997033:76997111:77002976:77003688:77018796:77018829,	77002977	77003688	77003337	77003337	Nonsense_Mutation	A	T	p.R144X
STAD	TCGA-D7-6822-01	ACSL3	ENST00000392066.3	chr2	223752547:223752606:223773450:223773868:223781036:223781214,	223773451	223773868	223773616	223773616	Nonsense_Mutation	T	G	p.Y42X
STAD	TCGA-CD-A4MJ-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224807	51224807	Nonsense_Mutation	G	A	p.Q981X
STAD	TCGA-CD-A4MJ-01	MFSD2A	ENST00000491515.1	chr1	40432757:40432841:40433299:40433588:40434005:40434149,	40433300	40433588	40433330	40433330	Nonsense_Mutation	C	T	p.Q361X
STAD	TCGA-CD-A4MJ-01	MFSD2A	ENST00000480630.1	chr1	40432757:40432841:40433299:40433383:40433475:40433588,40432333:40432363:40433299:40433383:40433475:40433588,	40433300	40433383	40433330	40433330	Nonsense_Mutation	C	T	p.Q361X
STAD	TCGA-CD-A4MJ-01	CXorf56	ENST00000320339.4,ENST00000371594.4	chrX	118678315:118678454:118679425:118679467:118694230:118694348,	118679426	118679467	118679451	118679451	Nonsense_Mutation	G	A	p.R87X
STAD	TCGA-CD-A4MJ-01	PIM1	ENST00000373509.5	chr6	37138974:37139267:37140771:37140948:37141709:37142023,	37140772	37140948	37140777	37140777	Nonsense_Mutation	C	T	p.R296X
STAD	TCGA-D7-6526-01	EGFLAM	ENST00000397210.3,ENST00000354891.3,ENST00000508868.1	chr5	38445780:38445804:38448402:38448481:38451416:38451560,	38448403	38448481	38448449	38448449	Nonsense_Mutation	C	A	p.Y845X
STAD	TCGA-D7-6526-01	EGFLAM	ENST00000506135.1	chr5	38445780:38445804:38448402:38448521:38451416:38451560,	38448403	38448521	38448449	38448449	Nonsense_Mutation	C	A	p.Y845X
STAD	TCGA-CG-4436-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317X
STAD	TCGA-B7-5818-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122749773:122749883:122754385:122754550:122756298:122756438,	122754386	122754550	122754405	122754405	Nonsense_Mutation	G	A	p.Q553X
STAD	TCGA-B7-5818-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268968	115268968	Nonsense_Mutation	G	A	p.Q548X
STAD	TCGA-BR-A4IY-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61834049	61834049	Nonsense_Mutation	C	A	p.E415X
STAD	TCGA-F1-A448-01	FUCA2	ENST00000438118.2	chr6	143818525:143818634:143823068:143823259:143828373:143828561,	143823069	143823259	143823103	143823103	Nonsense_Mutation	G	A	p.R374X
STAD	TCGA-F1-A448-01	TMEM39A	ENST00000319172.5	chr3	119156780:119156950:119165864:119166019:119171293:119171377,	119165865	119166019	119165905	119165905	Nonsense_Mutation	G	A	p.R179X
STAD	TCGA-F1-A448-01	TTK	ENST00000230510.3,ENST00000369798.2,ENST00000509894.1	chr6	80721602:80721697:80722995:80723083:80724179:80724303,	80722996	80723083	80723018	80723018	Nonsense_Mutation	C	T	p.R307X
STAD	TCGA-F1-A448-01	POLR2F	ENST00000407936.1,ENST00000606538.1,ENST00000443002.1,ENST00000405557.1,ENST00000484894.1,ENST00000470701.1,ENST00000442738.2	chr22	38352779:38352908:38355352:38355483:38363105:38363177,38352779:38352849:38355352:38355483:38363105:38363177,	38355353	38355483	38355392	38355392	Nonsense_Mutation	C	T	p.R44X
STAD	TCGA-F1-A448-01	ITIH1	ENST00000428133.1,ENST00000405128.3,ENST00000540715.1,ENST00000542827.1,ENST00000273283.2,ENST00000537050.1	chr3	52823668:52823870:52824764:52824937:52825532:52825615,	52824765	52824937	52824844	52824844	Nonsense_Mutation	C	T	p.R801X
STAD	TCGA-HU-8608-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256429	19256429	Nonsense_Mutation	T	A	p.K210X
STAD	TCGA-BR-A4QL-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315992	50315992	Nonsense_Mutation	G	T	p.G214X
STAD	TCGA-BR-A4QL-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469089	21469089	Nonsense_Mutation	G	A	p.W102X
STAD	TCGA-BR-A4QL-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56837435:56837574:56840911:56841135:56846308:56846461,	56840912	56841135	56841070	56841070	Nonsense_Mutation	C	T	p.R470X
STAD	TCGA-BR-A4QL-01	NLRP2	ENST00000538819.1,ENST00000448584.2,ENST00000263437.6,ENST00000537859.1	chr19	55477773:55477835:55481366:55481663:55485867:55485912,	55481367	55481663	55481624	55481624	Nonsense_Mutation	C	T	p.R81X
STAD	TCGA-BR-A4QL-01	NLRP2	ENST00000427260.2	chr19	55481366:55481521:55481590:55481663:55485867:55485912,	55481591	55481663	55481624	55481624	Nonsense_Mutation	C	T	p.R81X
STAD	TCGA-BR-A4QL-01	PPP3CB	ENST00000545874.1,ENST00000394829.2,ENST00000394828.2,ENST00000342558.3,ENST00000360663.5	chr10	75234676:75234788:75238256:75238381:75239074:75239275,	75238257	75238381	75238307	75238307	Nonsense_Mutation	G	A	p.R121X
STAD	TCGA-BR-A4QL-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236614	33236614	Nonsense_Mutation	A	T	p.K612X
STAD	TCGA-BR-A4QL-01	TDO2	ENST00000509738.1,ENST00000536354.2	chr4	156824846:156824945:156825169:156825275:156826218:156826308,	156825170	156825275	156825180	156825180	Nonsense_Mutation	A	T	p.K16X
STAD	TCGA-BR-A4QL-01	WSB1	ENST00000348811.2,ENST00000262394.2,ENST00000467843.2	chr17	25636125:25636298:25637086:25637200:25638534:25638642,	25637087	25637200	25637145	25637145	Nonsense_Mutation	C	T	p.R315X
STAD	TCGA-BR-A4QL-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390581	45390581	Nonsense_Mutation	G	T	p.E104X
STAD	TCGA-BR-A4QL-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000467388.1,ENST00000426233.1,ENST00000540518.1,ENST00000446622.1,ENST00000236959.9	chr2	216203592:216203630:216209501:216209594:216211481:216211664,	216209502	216209594	216209520	216209520	Nonsense_Mutation	C	T	p.R416X
STAD	TCGA-BR-A4QL-01	CTBP2	ENST00000411419.2,ENST00000531469.1,ENST00000337195.5	chr10	126692032:126692061:126727565:126727724:126822080:126822181,126692032:126692061:126727565:126727724:126799558:126799662,	126727566	126727724	126727587	126727587	Nonsense_Mutation	G	A	p.R13X
STAD	TCGA-BR-A4QL-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78766912:78767033:78795892:78796050:78987750:78988077,	78795893	78796050	78796030	78796030	Nonsense_Mutation	G	A	p.Q174X
STAD	TCGA-BR-A4QL-01	STX16	ENST00000467096.1,ENST00000490700.1,ENST00000359617.4,ENST00000361770.5,ENST00000483434.1,ENST00000361830.3,ENST00000476384.1,ENST00000371132.4,ENST00000358029.4,ENST00000371141.4,ENST00000355957.5	chr20	57245567:57245659:57246209:57246353:57248686:57248767,	57246210	57246353	57246273	57246273	Nonsense_Mutation	C	T	p.R238X
STAD	TCGA-BR-A4QL-01	STX16	ENST00000464640.1	chr20	57245567:57245659:57246219:57246353:57248686:57248767,	57246220	57246353	57246273	57246273	Nonsense_Mutation	C	T	p.R238X
STAD	TCGA-BR-A4QL-01	AKAP13	ENST00000361243.2	chr15	86201767:86201821:86205618:86205684:86207793:86207986,86198758:86199018:86205618:86205684:86207793:86207986,	86205619	86205684	86205628	86205628	Nonsense_Mutation	G	A	p.W1585X
STAD	TCGA-BR-A4QL-01	CTNNA1	ENST00000518825.1,ENST00000520158.1,ENST00000519309.1,ENST00000302763.7	chr5	138118865:138119061:138145726:138145893:138147871:138147991,	138145727	138145893	138145810	138145810	Nonsense_Mutation	C	T	p.R129X
STAD	TCGA-BR-A4QL-01	CPOX	ENST00000264193.2	chr3	98298285:98299614:98300250:98300355:98304284:98304342,	98300251	98300355	98300252	98300252	Nonsense_Mutation	G	A	p.R426X
STAD	TCGA-BR-A4QL-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911553	74911553	Nonsense_Mutation	C	T	p.R154X
STAD	TCGA-D7-5579-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000380554.3	chr10	5141518:5141641:5144292:5144402:5144676:5144842,	5144293	5144402	5144380	5144380	Nonsense_Mutation	G	T	p.G220X
STAD	TCGA-BR-A4PD-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103939	168103939	Nonsense_Mutation	A	T	p.R2013X
STAD	TCGA-BR-A4PD-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91X
STAD	TCGA-CG-4465-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203397307:203397455:203407033:203407170:203417438:203417611,	203407034	203407170	203407105	203407105	Nonsense_Mutation	C	T	p.Q450X
STAD	TCGA-CG-4465-01	PAPPA	ENST00000328252.3	chr9	118969734:118969880:118973917:118974211:118982215:118982408,	118973918	118974211	118974189	118974189	Nonsense_Mutation	C	G	p.Y632X
STAD	TCGA-CG-4465-01	IGFBP3	ENST00000381086.5,ENST00000275521.6	chr7	45956219:45956266:45956811:45957038:45960336:45960439,	45956812	45957038	45957023	45957023	Nonsense_Mutation	G	T	p.S146X
STAD	TCGA-CG-4465-01	DSG1	ENST00000257192.4	chr18	28911663:28911830:28913551:28913686:28913979:28914165,	28913552	28913686	28913591	28913591	Nonsense_Mutation	C	T	p.R242X
STAD	TCGA-CG-4465-01	CPXM2	ENST00000368854.3,ENST00000241305.3	chr10	125558630:125558715:125601864:125602004:125622129:125622239,	125601865	125602004	125601941	125601941	Nonsense_Mutation	G	A	p.Q193X
STAD	TCGA-CG-4465-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795871	42795871	Nonsense_Mutation	C	T	p.Q954X
STAD	TCGA-BR-8077-01	FER	ENST00000281092.4	chr5	108103793:108103939:108133824:108134090:108168470:108168521,	108133825	108134090	108134020	108134020	Nonsense_Mutation	T	A	p.L46X
STAD	TCGA-IN-8663-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120X
STAD	TCGA-IN-8663-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120X
STAD	TCGA-BR-8297-01	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000361713.1	chr10	37505108:37505322:37506622:37506806:37507907:37508825,	37506623	37506806	37506705	37506705	Nonsense_Mutation	G	T	p.E1000X
STAD	TCGA-BR-8297-01	BMP1	ENST00000520970.1	chr8	22059315:22059441:22064815:22065029:22066957:22067208,	22064816	22065029	22064885	22064885	Nonsense_Mutation	C	T	p.R811X
STAD	TCGA-BR-8297-01	MYRIP	ENST00000475082.1,ENST00000458292.1,ENST00000302541.6,ENST00000425621.1,ENST00000444716.1	chr3	39942277:39942417:40085540:40085762:40192538:40192675,	40085541	40085762	40085715	40085715	Nonsense_Mutation	C	G	p.Y95X
STAD	TCGA-BR-4370-01	LMF2	ENST00000474879.2	chr22	50945066:50945095:50945210:50945464:50946010:50946113,	50945211	50945464	50945386	50945386	Nonsense_Mutation	C	T	p.W58X
STAD	TCGA-BR-4370-01	LMF2	ENST00000216080.5	chr22	50945066:50945095:50945210:50945549:50946010:50946113,	50945211	50945549	50945386	50945386	Nonsense_Mutation	C	T	p.W58X
STAD	TCGA-BR-4370-01	PIGV	ENST00000374145.1,ENST00000078527.4	chr1	27117249:27117384:27120603:27121725:27124053:27124298,	27120604	27121725	27121087	27121087	Nonsense_Mutation	C	T	p.R188X
STAD	TCGA-BR-4370-01	SNX4	ENST00000473417.1,ENST00000465505.2,ENST00000251775.4	chr3	125216677:125216827:125216902:125217038:125223466:125223588,	125216903	125217038	125216990	125216990	Nonsense_Mutation	C	T	p.W104X
STAD	TCGA-BR-4370-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000301764.7	chr11	61093082:61093180:61094250:61094365:61099014:61099163,61093082:61093180:61094250:61094365:61096834:61097056,	61094251	61094365	61094323	61094323	Nonsense_Mutation	G	A	p.R198X
STAD	TCGA-BR-4370-01	FAM172A	ENST00000502503.1,ENST00000509163.1,ENST00000395965.3	chr5	93159853:93159973:93217175:93217394:93300162:93300228,93159853:93159973:93217175:93217394:93294481:93294673,	93217176	93217394	93217343	93217343	Nonsense_Mutation	C	A	p.E207X
STAD	TCGA-BR-4370-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37089049:37089174:37090007:37090100:37090394:37090508,	37090008	37090100	37090086	37090086	Nonsense_Mutation	C	T	p.R659X
STAD	TCGA-BR-4370-01	IKBKB	ENST00000519735.1,ENST00000521661.1,ENST00000342222.2,ENST00000518647.1	chr8	42128953:42128987:42129600:42129723:42147673:42147791,42128953:42128987:42129600:42129723:42146151:42146246,	42129601	42129723	42129709	42129709	Nonsense_Mutation	C	T	p.R31X
STAD	TCGA-BR-4370-01	CATSPER2	ENST00000354127.4,ENST00000396879.1,ENST00000381761.1	chr15	43924396:43924561:43924914:43925126:43927557:43927614,	43924915	43925126	43925050	43925050	Nonsense_Mutation	C	A	p.E421X
STAD	TCGA-BR-4370-01	CATSPER2	ENST00000321596.5	chr15	43924396:43924561:43924914:43925132:43927557:43927614,	43924915	43925132	43925050	43925050	Nonsense_Mutation	C	A	p.E421X
STAD	TCGA-BR-4370-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752135	36752135	Nonsense_Mutation	G	T	p.G102X
STAD	TCGA-BR-4370-01	SEL1L2	ENST00000486903.1,ENST00000378072.5	chr20	13845812:13845887:13847347:13847496:13850148:13850236,	13847348	13847496	13847380	13847380	Nonsense_Mutation	C	A	p.G458X
STAD	TCGA-BR-4257-01	BAIAP3	ENST00000397488.2,ENST00000421665.2,ENST00000426824.3,ENST00000397489.1,ENST00000568887.1,ENST00000568198.1,ENST00000562208.1,ENST00000324385.5	chr16	1394469:1394526:1394601:1394699:1394798:1394850,	1394602	1394699	1394670	1394670	Nonsense_Mutation	C	A	p.C611X
STAD	TCGA-BR-4257-01	NLRC5	ENST00000538805.1,ENST00000262510.6,ENST00000538930.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000538110.1,ENST00000436936.1	chr16	57088943:57089006:57091976:57092060:57092883:57092973,57089347:57089431:57091976:57092060:57092883:57092973,	57091977	57092060	57092035	57092035	Nonsense_Mutation	C	T	p.Q1269X
STAD	TCGA-BR-4257-01	POLQ	ENST00000264233.5,ENST00000488282.1	chr3	121240849:121240996:121248491:121248639:121251836:121252056,	121248492	121248639	121248525	121248525	Nonsense_Mutation	G	A	p.R359X
STAD	TCGA-BR-4257-01	SERPINB13	ENST00000269489.5,ENST00000344731.5	chr18	61259581:61259710:61260087:61260205:61261259:61261472,61259581:61259710:61260087:61260205:61261588:61261731,	61260088	61260205	61260166	61260166	Nonsense_Mutation	C	T	p.R145X
STAD	TCGA-BR-4257-01	NAP1L1	ENST00000552147.1,ENST00000542344.1	chr12	76448827:76448870:76449812:76449938:76453577:76453658,	76449813	76449938	76449858	76449858	Nonsense_Mutation	C	T	p.W171X
STAD	TCGA-BR-4257-01	NAP1L1	ENST00000535020.2,ENST00000547529.2,ENST00000547773.1,ENST00000393263.3,ENST00000544816.1,ENST00000549596.1,ENST00000548273.1,ENST00000548044.1,ENST00000551992.1,ENST00000261182.8,ENST00000552056.1	chr12	76448827:76448870:76449812:76449941:76453917:76454059,76448827:76448870:76449812:76449941:76453577:76453658,	76449813	76449941	76449858	76449858	Nonsense_Mutation	C	T	p.W171X
STAD	TCGA-BR-4257-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210721	37210721	Nonsense_Mutation	T	A	p.Y334X
STAD	TCGA-IN-8462-01	RFTN1	ENST00000451036.1,ENST00000441460.1,ENST00000431547.1,ENST00000334133.4,ENST00000449415.1	chr3	16450979:16450990:16475357:16475544:16535231:16535384,	16475358	16475544	16475457	16475457	Nonsense_Mutation	G	T	p.S78X
STAD	TCGA-FP-7916-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32328198:32328393:32360216:32360399:32361250:32361403,	32360217	32360399	32360399	32360399	Nonsense_Mutation	C	A	p.E1914X
STAD	TCGA-BR-7957-01	PIGR	ENST00000356495.4	chr1	207110986:207111096:207112463:207112808:207113833:207113929,	207112464	207112808	207112623	207112623	Nonsense_Mutation	T	A	p.K77X
STAD	TCGA-BR-7957-01	ALOX5	ENST00000374391.2,ENST00000542434.1	chr10	45877930:45878129:45891302:45891384:45907638:45907761,	45891303	45891384	45891347	45891347	Nonsense_Mutation	C	T	p.R132X
STAD	TCGA-BR-8591-01	ARHGAP28	ENST00000532996.1,ENST00000314319.3,ENST00000579245.1,ENST00000531294.1,ENST00000400091.2,ENST00000418986.1,ENST00000383472.4,ENST00000262227.3,ENST00000419673.2	chr18	6873682:6873774:6876129:6876207:6882135:6882298,	6876130	6876207	6876205	6876205	Nonsense_Mutation	A	T	p.K271X
STAD	TCGA-BR-8591-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120836068:120836157:120844746:120844816:120847922:120848092,	120844747	120844816	120844814	120844814	Nonsense_Mutation	C	T	p.Q291X
STAD	TCGA-BR-8591-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091558	143091558	Nonsense_Mutation	G	A	p.R1440X
STAD	TCGA-BR-8591-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000375695.2	chrX	51641209:51641289:51641380:51641423:51641676:51641724,	51641381	51641423	51641391	51641391	Nonsense_Mutation	G	A	p.W639X
STAD	TCGA-BR-8591-01	C1orf174	ENST00000361605.3	chr1	3807132:3807621:3809446:3809560:3816735:3816811,	3809447	3809560	3809521	3809521	Nonsense_Mutation	G	A	p.R19X
STAD	TCGA-BR-8591-01	HABP4	ENST00000375249.4	chr9	99212486:99212910:99220660:99220823:99227618:99227780,	99220661	99220823	99220764	99220764	Nonsense_Mutation	C	A	p.Y151X
STAD	TCGA-BR-8591-01	ZNF277	ENST00000457808.1,ENST00000361946.4,ENST00000361822.3,ENST00000450657.1	chr7	111936283:111936366:111958236:111958328:111967771:111967882,	111958237	111958328	111958267	111958267	Nonsense_Mutation	C	T	p.R166X
STAD	TCGA-HU-8249-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17081700:17081843:17085906:17086068:17086811:17086878,	17085907	17086068	17085975	17085975	Nonsense_Mutation	G	A	p.R715X
STAD	TCGA-BR-A4J1-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103082	61103082	Nonsense_Mutation	C	T	p.Q575X
STAD	TCGA-BR-A4J1-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208570	55208570	Nonsense_Mutation	C	T	p.R250X
STAD	TCGA-BR-A4J1-01	IGSF9	ENST00000361509.3,ENST00000368094.1	chr1	159900939:159901051:159901242:159901393:159901601:159901718,	159901243	159901393	159901336	159901336	Nonsense_Mutation	G	A	p.R474X
STAD	TCGA-CG-4300-01	HCK	ENST00000538448.1,ENST00000518730.1,ENST00000486475.1,ENST00000375862.2,ENST00000375852.2,ENST00000520553.1,ENST00000262651.3,ENST00000534862.1	chr20	30681665:30681819:30686806:30686938:30689119:30689322,	30686807	30686938	30686829	30686829	Nonsense_Mutation	G	A	p.W423X
STAD	TCGA-CG-4300-01	FAR2	ENST00000182377.4	chr12	29302252:29302340:29423344:29423571:29446232:29446408,29376677:29376827:29423344:29423571:29446232:29446408,	29423345	29423571	29423406	29423406	Nonsense_Mutation	T	G	p.Y8X
STAD	TCGA-CG-5718-01	BIRC6	ENST00000421745.2	chr2	32713654:32713781:32715107:32715218:32716491:32716625,	32715108	32715218	32715111	32715111	Nonsense_Mutation	C	G	p.S2700X
STAD	TCGA-CG-5718-01	IGFBP1	ENST00000275525.3	chr7	45930152:45930316:45931530:45931659:45932558:45933252,	45931531	45931659	45931540	45931540	Nonsense_Mutation	C	T	p.R177X
STAD	TCGA-CG-5719-01	GRM7	ENST00000357716.4,ENST00000389336.4,ENST00000440923.3,ENST00000445087.1,ENST00000402647.2,ENST00000486284.1,ENST00000389335.3,ENST00000403881.1,ENST00000467425.1,ENST00000463676.2	chr3	7456709:7456850:7494293:7494494:7503269:7503409,	7494294	7494494	7494338	7494338	Nonsense_Mutation	A	T	p.K407X
STAD	TCGA-BR-7958-01	TRMT13	ENST00000370141.2	chr1	100609624:100609699:100613449:100613882:100614180:100616053,	100613450	100613882	100613741	100613741	Nonsense_Mutation	G	A	p.W370X
STAD	TCGA-BR-7958-01	TOLLIP	ENST00000527886.1,ENST00000263646.7,ENST00000317204.6	chr11	1309865:1310006:1311456:1311639:1330695:1330813,1309865:1310006:1311456:1311639:1316874:1316961,	1311457	1311639	1311591	1311591	Nonsense_Mutation	G	A	p.R78X
STAD	TCGA-D7-6528-01	FUT10	ENST00000327671.5,ENST00000524021.1,ENST00000518672.1	chr8	33230161:33230322:33246480:33247316:33310733:33311028,	33246481	33247316	33246606	33246606	Nonsense_Mutation	G	A	p.R363X
STAD	TCGA-BR-4201-01	GPN3	ENST00000550974.1,ENST00000543199.1,ENST00000228827.3,ENST00000537466.2	chr12	110895314:110895439:110897499:110897667:110902910:110903019,	110897500	110897667	110897617	110897617	Nonsense_Mutation	G	A	p.R109X
STAD	TCGA-BR-4201-01	MANSC1	ENST00000396349.3,ENST00000535902.1	chr12	12482646:12483892:12491353:12491494:12496025:12496107,	12491354	12491494	12491444	12491444	Nonsense_Mutation	G	A	p.Q92X
STAD	TCGA-BR-4201-01	NNMT	ENST00000535401.1,ENST00000299964.3	chr11	114167149:114167432:114168672:114168880:114182766:114182930,	114168673	114168880	114168792	114168792	Nonsense_Mutation	C	T	p.Q92X
STAD	TCGA-BR-4201-01	GLT8D1	ENST00000481643.1,ENST00000463827.1,ENST00000407584.3,ENST00000394783.3,ENST00000266014.5,ENST00000491606.1,ENST00000478968.2	chr3	52729205:52729318:52729436:52729603:52729943:52730056,	52729437	52729603	52729486	52729486	Nonsense_Mutation	G	A	p.R255X
STAD	TCGA-BR-4201-01	KIAA0556	ENST00000261588.4	chr16	27561472:27561498:27585221:27585277:27629745:27629822,	27585222	27585277	27585252	27585252	Nonsense_Mutation	G	A	p.W13X
STAD	TCGA-BR-4201-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088540	109088540	Nonsense_Mutation	C	T	p.R919X
STAD	TCGA-BR-4201-01	CTR9	ENST00000361367.2	chr11	10792033:10792179:10793091:10793163:10794066:10794202,	10793092	10793163	10793117	10793117	Nonsense_Mutation	G	T	p.G800X
STAD	TCGA-BR-4201-01	ALDH3A2	ENST00000571163.1	chr17	19566698:19566812:19568260:19568360:19575033:19575269,19566698:19566812:19568260:19568360:19578870:19579060,	19568261	19568360	19568354	19568354	Nonsense_Mutation	G	T	p.G401X
STAD	TCGA-BR-4201-01	CCNC	ENST00000520371.1,ENST00000524049.1,ENST00000523799.1,ENST00000520429.1,ENST00000484049.2,ENST00000518714.1,ENST00000326298.4,ENST00000523961.1,ENST00000486428.2,ENST00000523985.1	chr6	99997383:99997451:99998093:99998185:99998868:99998904,	99998094	99998185	99998177	99998177	Nonsense_Mutation	G	T	p.C149X
STAD	TCGA-BR-4201-01	CEACAM7	ENST00000401731.1	chr19	42187975:42187994:42190789:42191152:42192030:42192096,	42190790	42191152	42190985	42190985	Nonsense_Mutation	G	A	p.R78X
STAD	TCGA-BR-4201-01	HDAC1	ENST00000373541.2,ENST00000373548.3,ENST00000482310.1,ENST00000490081.1	chr1	32793136:32793278:32794668:32794761:32796178:32796287,	32794669	32794761	32794717	32794717	Nonsense_Mutation	C	T	p.R229X
STAD	TCGA-BR-4201-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131274340:131274395:131283059:131283193:131293914:131293974,	131283060	131283193	131283121	131283121	Nonsense_Mutation	G	A	p.Q334X
STAD	TCGA-D7-A4YT-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113704991	113704991	Nonsense_Mutation	C	A	p.E201X
STAD	TCGA-D7-A4YT-01	INTU	ENST00000503626.1,ENST00000503952.1,ENST00000335251.6	chr4	128629725:128629823:128632067:128632257:128635090:128635248,	128632068	128632257	128632186	128632186	Nonsense_Mutation	C	T	p.Q830X
STAD	TCGA-D7-A4YT-01	ARHGAP24	ENST00000506421.1,ENST00000503995.1	chr4	86396638:86396712:86491674:86491874:86643037:86643125,	86491675	86491874	86491782	86491782	Nonsense_Mutation	G	T	p.G30X
STAD	TCGA-D7-A4YT-01	CCDC74B	ENST00000409943.3,ENST00000392984.3,ENST00000310463.6	chr2	130897595:130897669:130897751:130897944:130898730:130898869,	130897752	130897944	130897829	130897829	Nonsense_Mutation	G	A	p.R267X
STAD	TCGA-D7-8575-01	A2M	ENST00000318602.7,ENST00000404455.2	chr12	9264754:9264807:9264972:9265132:9265955:9266135,	9264973	9265132	9264996	9264996	Nonsense_Mutation	G	T	p.S136X
STAD	TCGA-CG-4305-01	CDC7	ENST00000428239.1,ENST00000234626.6,ENST00000430031.2	chr1	91981350:91981433:91985686:91985836:91989597:91990056,	91985687	91985836	91985737	91985737	Nonsense_Mutation	C	T	p.R411X
STAD	TCGA-CG-4305-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067454	62067454	Nonsense_Mutation	G	A	p.R229X
STAD	TCGA-CG-4305-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067454	62067454	Nonsense_Mutation	G	A	p.R229X
STAD	TCGA-CG-4305-01	ZZEF1	ENST00000573183.1,ENST00000571436.1,ENST00000381638.2	chr17	3935419:3935552:3936121:3936296:3937308:3937441,	3936122	3936296	3936194	3936194	Nonsense_Mutation	G	T	p.C2229X
STAD	TCGA-CG-4305-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	121059788:121059876:121060472:121060589:121061414:121061515,	121060473	121060589	121060508	121060508	Nonsense_Mutation	C	T	p.Q2096X
STAD	TCGA-CG-4305-01	AP1G2	ENST00000556741.1,ENST00000397120.3,ENST00000308724.5,ENST00000554977.1,ENST00000535852.2,ENST00000460049.2	chr14	24032827:24032847:24032924:24033065:24033254:24033294,	24032925	24033065	24033019	24033019	Nonsense_Mutation	G	A	p.R380X
STAD	TCGA-CG-4305-01	AP1G2	ENST00000555974.1	chr14	24032681:24032711:24032792:24033065:24033254:24033294,	24032793	24033065	24033019	24033019	Nonsense_Mutation	G	A	p.R380X
STAD	TCGA-CG-4305-01	SAMD12	ENST00000524796.1,ENST00000409003.4	chr8	119209785:119209971:119391798:119391939:119452070:119452200,	119391799	119391939	119391937	119391937	Nonsense_Mutation	G	A	p.R109X
STAD	TCGA-CG-4305-01	TRAK2	ENST00000332624.3	chr2	202254523:202254603:202257631:202257769:202259520:202259595,	202257632	202257769	202257733	202257733	Nonsense_Mutation	C	A	p.G338X
STAD	TCGA-CG-4305-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677405	73677405	Nonsense_Mutation	C	T	p.Q1250X
STAD	TCGA-CG-4305-01	TMEM63A	ENST00000366835.3	chr1	226046895:226047049:226048559:226048697:226049917:226050051,	226048560	226048697	226048598	226048598	Nonsense_Mutation	C	T	p.W395X
STAD	TCGA-CG-4305-01	SPATS2	ENST00000552557.1,ENST00000321898.6,ENST00000553127.1,ENST00000552918.1	chr12	49890615:49890792:49893852:49893988:49908337:49908396,	49893853	49893988	49893963	49893963	Nonsense_Mutation	C	T	p.Q272X
STAD	TCGA-CG-4305-01	ARAP2	ENST00000303965.4	chr4	36075310:36075445:36081837:36081901:36083872:36083908,	36081838	36081901	36081901	36081901	Nonsense_Mutation	C	T	p.W1515X
STAD	TCGA-CG-4305-01	ORC1	ENST00000371568.3,ENST00000371566.1	chr1	52849091:52849241:52849501:52849609:52850221:52850393,	52849502	52849609	52849543	52849543	Nonsense_Mutation	G	A	p.R608X
STAD	TCGA-CG-4305-01	FCRLA	ENST00000367957.2	chr1	161680997:161681264:161681723:161682008:161682874:161683242,161680549:161680702:161681723:161682008:161682874:161683242,161677084:161677133:161681723:161682008:161682874:161683242,	161681724	161682008	161681777	161681777	Nonsense_Mutation	G	T	p.G208X
STAD	TCGA-CG-4305-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681777	161681777	Nonsense_Mutation	G	T	p.G208X
STAD	TCGA-CG-4305-01	MARK3	ENST00000303622.9,ENST00000416682.2,ENST00000216288.7	chr14	103946773:103946827:103958113:103958371:103964838:103964865,103946773:103946827:103958113:103958371:103966492:103966537,103946773:103946827:103958113:103958371:103969218:103969403,	103958114	103958371	103958244	103958244	Nonsense_Mutation	C	T	p.R573X
STAD	TCGA-CG-4305-01	TTC12	ENST00000529850.1,ENST00000525965.1,ENST00000314756.3,ENST00000494714.1	chr11	113185328:113185340:113186964:113187037:113194009:113194173,	113186965	113187037	113187019	113187019	Nonsense_Mutation	A	T	p.K14X
STAD	TCGA-CG-4305-01	TTC12	ENST00000429951.1	chr11	113185328:113185340:113186672:113187037:113194009:113194173,	113186673	113187037	113187019	113187019	Nonsense_Mutation	A	T	p.K14X
STAD	TCGA-FP-7735-01	C6orf106	ENST00000374021.1,ENST00000374023.3	chr6	34558285:34558377:34574331:34574681:34622401:34622556,34558285:34558377:34574331:34574681:34614377:34614575,	34574332	34574681	34574511	34574511	Nonsense_Mutation	T	A	p.K228X
STAD	TCGA-BR-4255-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158095	27158095	Nonsense_Mutation	C	T	p.R107X
STAD	TCGA-BR-4362-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157959622:157959983:157985018:157985187:157997862:157997965,	157985019	157985187	157985114	157985114	Nonsense_Mutation	G	A	p.R152X
STAD	TCGA-BR-4362-01	ZNRF3	ENST00000402174.1,ENST00000406323.3,ENST00000544604.2,ENST00000332811.4	chr22	29439286:29439418:29440767:29440878:29442703:29442871,	29440768	29440878	29440867	29440867	Nonsense_Mutation	C	T	p.R245X
STAD	TCGA-BR-4362-01	ABI1	ENST00000376160.1,ENST00000376139.2,ENST00000376166.1	chr10	27059173:27059274:27065993:27066170:27112066:27112219,	27065994	27066170	27066140	27066140	Nonsense_Mutation	G	A	p.R123X
STAD	TCGA-BR-4362-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984731	11984731	Nonsense_Mutation	C	T	p.Q93X
STAD	TCGA-BR-4362-01	ACOT9	ENST00000473710.1,ENST00000336430.7,ENST00000494361.1,ENST00000379303.5,ENST00000492081.1,ENST00000379295.1	chrX	23748643:23748681:23748932:23749103:23751288:23751314,	23748933	23749103	23748967	23748967	Nonsense_Mutation	G	A	p.R110X
STAD	TCGA-BR-4362-01	SLC47A2	ENST00000325411.5,ENST00000350657.5,ENST00000467379.1,ENST00000463318.1,ENST00000467609.1,ENST00000433844.2,ENST00000574239.1	chr17	19617137:19617286:19618033:19618102:19618428:19618530,	19618034	19618102	19618075	19618075	Nonsense_Mutation	C	A	p.G85X
STAD	TCGA-BR-4362-01	HMSD	ENST00000481726.1	chr18	61616590:61616634:61621641:61621791:61627391:61627434,	61621642	61621791	61621687	61621687	Nonsense_Mutation	C	T	p.R40X
STAD	TCGA-BR-4362-01	MAP7D2	ENST00000379643.5,ENST00000443379.3	chrX	20081531:20081695:20082845:20082923:20134867:20135016,	20082846	20082923	20082870	20082870	Nonsense_Mutation	G	A	p.R62X
STAD	TCGA-HU-A4H2-01	CNDP1	ENST00000358821.3,ENST00000582365.1	chr18	72226557:72226707:72228090:72228253:72229281:72229370,	72228091	72228253	72228193	72228193	Nonsense_Mutation	C	T	p.Q136X
STAD	TCGA-HU-A4H2-01	FOXA2	ENST00000377115.4	chr20	22561642:22563792:22564829:22564899:22565912:22566093,	22564830	22564899	22564868	22564868	Nonsense_Mutation	C	A	p.E17X
STAD	TCGA-HU-A4GC-01	DNM2	ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000590806.1,ENST00000585892.1,ENST00000359692.6	chr19	10930655:10930765:10934463:10934575:10935732:10935897,	10934464	10934575	10934546	10934546	Nonsense_Mutation	C	T	p.R622X
STAD	TCGA-HU-A4GC-01	MYO5A	ENST00000399231.3,ENST00000358212.6,ENST00000399229.2,ENST00000399233.2,ENST00000356338.6,ENST00000553916.1	chr15	52620048:52620203:52622549:52622696:52628659:52628753,	52622550	52622696	52622646	52622646	Nonsense_Mutation	G	A	p.R1462X
STAD	TCGA-HU-A4GC-01	GNB1L	ENST00000403325.1,ENST00000329517.6,ENST00000405009.1	chr22	19799817:19799970:19808120:19808246:19808750:19808898,	19808121	19808246	19808157	19808157	Nonsense_Mutation	C	T	p.W73X
STAD	TCGA-HU-A4GC-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300777	18300777	Nonsense_Mutation	C	T	p.W1550X
STAD	TCGA-CG-4438-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
STAD	TCGA-CG-4438-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39588424	39588424	Nonsense_Mutation	G	C	p.S322X
STAD	TCGA-BR-7707-01	ZBP1	ENST00000343535.4,ENST00000432548.2,ENST00000541799.1	chr20	56190567:56190636:56191299:56191524:56195274:56195534,56190567:56190636:56191299:56191524:56195317:56195450,	56191300	56191524	56191408	56191408	Nonsense_Mutation	G	A	p.R51X
STAD	TCGA-BR-7707-01	ESPN	ENST00000434576.1	chr1	6517420:6517432:6520058:6520170:6521239:6521430,	6520059	6520170	6520165	6520165	Nonsense_Mutation	C	T	p.R842X
STAD	TCGA-BR-7707-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67170421:67170535:67170747:67170918:67171546:67171654,	67170748	67170918	67170783	67170783	Nonsense_Mutation	C	A	p.G1005X
STAD	TCGA-BR-7707-01	CERKL	ENST00000374967.2	chr2	182414360:182414435:182423292:182423435:182468563:182468806,182414360:182414435:182423292:182423435:182438479:182438611,	182423293	182423435	182423344	182423344	Nonsense_Mutation	G	A	p.R283X
STAD	TCGA-BR-7707-01	MORF4L1	ENST00000558746.1,ENST00000559619.1,ENST00000558893.1,ENST00000558522.1,ENST00000557961.1,ENST00000426013.2,ENST00000331268.5,ENST00000561171.1,ENST00000559258.1	chr15	79165346:79165560:79170554:79170601:79172853:79172921,79165384:79165399:79170554:79170601:79172853:79172921,	79170555	79170601	79170560	79170560	Nonsense_Mutation	C	T	p.R16X
STAD	TCGA-BR-7707-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698552	17698552	Nonsense_Mutation	G	T	p.E764X
STAD	TCGA-BR-7707-01	TTPAL	ENST00000262605.4,ENST00000372904.3	chr20	43112976:43113170:43115235:43115346:43117903:43118094,	43115236	43115346	43115284	43115284	Nonsense_Mutation	C	T	p.R230X
STAD	TCGA-BR-7707-01	LETMD1	ENST00000548209.1	chr12	51442860:51442968:51449926:51450028:51450132:51450174,51449769:51449804:51449926:51450028:51450132:51450174,51447594:51447643:51449926:51450028:51450132:51450174,	51449927	51450028	51450008	51450008	Nonsense_Mutation	C	T	p.Q261X
STAD	TCGA-BR-7707-01	LETMD1	ENST00000550814.1	chr12	51447594:51447643:51449932:51450028:51450132:51450174,	51449933	51450028	51450008	51450008	Nonsense_Mutation	C	T	p.Q261X
STAD	TCGA-BR-7707-01	TTLL4	ENST00000442769.1,ENST00000258398.4,ENST00000457313.1,ENST00000392102.1	chr2	219616476:219616529:219617485:219617696:219617837:219617908,	219617486	219617696	219617636	219617636	Nonsense_Mutation	C	T	p.R1043X
STAD	TCGA-BR-7707-01	NLRC5	ENST00000262510.6,ENST00000545081.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57095359:57095443:57095529:57095613:57099123:57099210,	57095530	57095613	57095558	57095558	Nonsense_Mutation	C	T	p.Q1367X
STAD	TCGA-BR-7707-01	SUGP2	ENST00000601879.1,ENST00000337018.6,ENST00000452918.2,ENST00000456085.2,ENST00000598240.1,ENST00000594773.1,ENST00000600377.1,ENST00000330854.11	chr19	19105960:19106089:19112421:19112483:19114976:19115078,	19112422	19112483	19112469	19112469	Nonsense_Mutation	G	A	p.R982X
STAD	TCGA-BR-7707-01	ATP6V1B1	ENST00000432367.1,ENST00000234396.4	chr2	71189967:71190030:71190291:71190442:71190701:71190784,	71190292	71190442	71190412	71190412	Nonsense_Mutation	C	T	p.Q344X
STAD	TCGA-BR-7707-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285159	217285159	Nonsense_Mutation	C	T	p.R334X
STAD	TCGA-BR-7707-01	DDX50	ENST00000373585.3,ENST00000466265.1	chr10	70695761:70695835:70696691:70696851:70700815:70700950,	70696692	70696851	70696828	70696828	Nonsense_Mutation	C	T	p.R578X
STAD	TCGA-BR-6452-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216272830:216272920:216273020:216273149:216274285:216274462,	216273021	216273149	216273076	216273076	Nonsense_Mutation	A	T	p.Y791X
STAD	TCGA-BR-6452-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561822	32561822	Nonsense_Mutation	G	A	p.W649X
STAD	TCGA-BR-6452-01	PUM1	ENST00000526215.1	chr1	31454184:31454252:31479840:31479949:31501642:31501711,	31479841	31479949	31479866	31479866	Nonsense_Mutation	C	T	p.W172X
STAD	TCGA-BR-6452-01	VPS53	ENST00000437048.2,ENST00000291074.5,ENST00000571805.1	chr17	530413:530556:534789:534868:556530:556650,531327:531471:534789:534868:556530:556650,	534790	534868	534801	534801	Nonsense_Mutation	G	A	p.Q226X
STAD	TCGA-BR-6452-01	UBR2	ENST00000372899.1,ENST00000372901.1,ENST00000372903.2	chr6	42559888:42559967:42561928:42562042:42571325:42571456,	42561929	42562042	42562040	42562040	Nonsense_Mutation	G	T	p.E177X
STAD	TCGA-BR-6452-01	OAS3	ENST00000548514.1	chr12	113376350:113376512:113379374:113379657:113382280:113382456,	113379375	113379657	113379524	113379524	Nonsense_Mutation	G	A	p.W109X
STAD	TCGA-BR-6452-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101520078:101520833:101525896:101525970:101535638:101535845,	101525897	101525970	101525942	101525942	Nonsense_Mutation	G	A	p.W298X
STAD	TCGA-BR-6452-01	ATP7B	ENST00000400370.3,ENST00000417240.2,ENST00000242839.4,ENST00000448424.2,ENST00000400366.3	chr13	52518244:52518427:52523797:52523932:52524142:52524297,52520419:52520614:52523797:52523932:52524142:52524297,	52523798	52523932	52523920	52523920	Nonsense_Mutation	G	A	p.Q915X
STAD	TCGA-BR-6452-01	TMEM40	ENST00000435218.2	chr3	12780051:12780087:12783952:12784006:12785398:12785488,12780051:12780087:12783952:12784006:12791258:12791339,12780051:12780087:12783952:12784006:12790153:12790291,	12783953	12784006	12783956	12783956	Nonsense_Mutation	C	A	p.G118X
STAD	TCGA-BR-6452-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11761030:11761133:11765279:11765438:11767087:11767230,	11765280	11765438	11765302	11765302	Nonsense_Mutation	G	A	p.W1390X
STAD	TCGA-BR-6452-01	MAP3K6	ENST00000472410.1,ENST00000493901.1,ENST00000357582.2,ENST00000374040.3	chr1	27688195:27688358:27688581:27688741:27689131:27689244,	27688582	27688741	27688704	27688704	Nonsense_Mutation	G	T	p.C431X
STAD	TCGA-BR-6452-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000488035.1,ENST00000456040.1,ENST00000410054.1,ENST00000264160.4,ENST00000329971.3	chr2	136380223:136380302:136389287:136389347:136389430:136389508,	136389288	136389347	136389319	136389319	Nonsense_Mutation	G	T	p.E177X
STAD	TCGA-BR-6452-01	TECPR2	ENST00000558678.1,ENST00000359520.7	chr14	102916896:102916986:102918730:102918964:102931477:102931626,	102918731	102918964	102918744	102918744	Nonsense_Mutation	G	A	p.W1140X
STAD	TCGA-BR-6452-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503449	32503449	Nonsense_Mutation	G	T	p.G307X
STAD	TCGA-BR-6452-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503449	32503449	Nonsense_Mutation	G	T	p.G307X
STAD	TCGA-BR-6452-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50041999:50042096:50050611:50051175:50054354:50054471,	50050612	50051175	50050783	50050783	Nonsense_Mutation	T	A	p.C171X
STAD	TCGA-BR-6452-01	MCF2	ENST00000370573.4,ENST00000414978.1,ENST00000370578.4,ENST00000370576.4,ENST00000519895.1,ENST00000520602.1,ENST00000338585.6	chrX	138711853:138712003:138713553:138713670:138714493:138714613,	138713554	138713670	138713569	138713569	Nonsense_Mutation	C	T	p.W151X
STAD	TCGA-BR-6452-01	EML1	ENST00000262233.6,ENST00000334192.4	chr14	100259749:100259880:100317189:100317372:100331850:100331934,	100317190	100317372	100317246	100317246	Nonsense_Mutation	G	T	p.E42X
STAD	TCGA-BR-6452-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47889270:47889446:47889669:47889876:47889958:47890040,	47889670	47889876	47889772	47889772	Nonsense_Mutation	C	T	p.R797X
STAD	TCGA-BR-6452-01	TLE4	ENST00000376534.4,ENST00000414465.1,ENST00000496853.1	chr9	82227570:82227633:82242288:82242363:82264734:82264773,82227570:82227633:82242288:82242363:82267507:82267709,82227570:82227633:82242288:82242363:82267504:82267544,	82242289	82242363	82242307	82242307	Nonsense_Mutation	C	T	p.Q112X
STAD	TCGA-BR-6452-01	SLC39A14	ENST00000240095.6,ENST00000381237.1	chr8	22224817:22224921:22262208:22262493:22265822:22265920,	22262209	22262493	22262401	22262401	Nonsense_Mutation	C	T	p.Q60X
STAD	TCGA-BR-6452-01	PTPRU	ENST00000323874.8,ENST00000460170.2,ENST00000373779.3,ENST00000428026.2,ENST00000531385.1,ENST00000356870.3	chr1	29610451:29610488:29611242:29611381:29618380:29618538,	29611243	29611381	29611288	29611288	Nonsense_Mutation	C	A	p.S742X
STAD	TCGA-BR-6452-01	POLD3	ENST00000263681.2,ENST00000528481.1,ENST00000527458.1,ENST00000530511.1	chr11	74305105:74305161:74315736:74315839:74322543:74322583,	74315737	74315839	74315765	74315765	Nonsense_Mutation	C	T	p.R49X
STAD	TCGA-BR-6452-01	RBM41	ENST00000372487.1,ENST00000372479.3	chrX	106312539:106312632:106331665:106332069:106358581:106358684,	106331666	106332069	106331799	106331799	Nonsense_Mutation	C	T	p.W265X
STAD	TCGA-BR-6452-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556150.1,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63863303:63863434:63881857:63881950:63888710:63888812,	63881858	63881950	63881929	63881929	Nonsense_Mutation	G	A	p.R160X
STAD	TCGA-BR-6452-01	PDE3B	ENST00000282096.4,ENST00000455098.2	chr11	14854267:14854379:14856527:14856641:14865372:14865572,	14856528	14856641	14856574	14856574	Nonsense_Mutation	T	A	p.Y751X
STAD	TCGA-BR-6452-01	RBM18	ENST00000483428.1,ENST00000417201.3	chr9	125007534:125007620:125009796:125009883:125014125:125014252,	125009797	125009883	125009820	125009820	Nonsense_Mutation	G	A	p.R102X
STAD	TCGA-BR-6452-01	ASH2L	ENST00000428278.2,ENST00000343823.6,ENST00000521652.1,ENST00000250635.7	chr8	37963895:37963962:37964538:37964684:37967896:37967985,	37964539	37964684	37964605	37964605	Nonsense_Mutation	C	T	p.R108X
STAD	TCGA-BR-6452-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000490210.2,ENST00000589732.1,ENST00000589326.1	chr18	77067189:77067234:77089140:77089302:77090011:77090104,	77089141	77089302	77089273	77089273	Nonsense_Mutation	G	T	p.E636X
STAD	TCGA-BR-6452-01	HDAC8	ENST00000373573.3,ENST00000421523.1,ENST00000373571.1,ENST00000436675.1,ENST00000439122.2,ENST00000415409.1,ENST00000373561.4	chrX	71715043:71715118:71787738:71787880:71791906:71791959,71715005:71715118:71787738:71787880:71788603:71788734,	71787739	71787880	71787753	71787753	Nonsense_Mutation	C	T	p.W141X
STAD	TCGA-BR-6452-01	PPIL6	ENST00000518648.1	chr6	109740389:109740446:109748049:109748155:109752359:109752504,	109748050	109748155	109748083	109748083	Nonsense_Mutation	G	A	p.R200X
STAD	TCGA-BR-6452-01	STAC3	ENST00000332782.2,ENST00000557176.1,ENST00000554578.1,ENST00000546246.2	chr12	57638097:57638149:57638319:57638405:57638698:57638748,	57638320	57638405	57638384	57638384	Nonsense_Mutation	G	A	p.Q248X
STAD	TCGA-BR-6452-01	STAR	ENST00000521236.1	chr8	38003880:38003965:38005717:38005877:38006158:38006272,	38005718	38005877	38005720	38005720	Nonsense_Mutation	G	A	p.Q102X
STAD	TCGA-BR-6452-01	STAR	ENST00000276449.4,ENST00000522050.1	chr8	38003880:38003965:38005717:38005845:38006158:38006272,	38005718	38005845	38005720	38005720	Nonsense_Mutation	G	A	p.Q102X
STAD	TCGA-BR-4366-01	TNIP1	ENST00000524280.1,ENST00000315050.7,ENST00000518977.1,ENST00000523200.1,ENST00000389378.2,ENST00000519339.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150418657:150418786:150422100:150422232:150422456:150422522,	150422101	150422232	150422226	150422226	Nonsense_Mutation	C	A	p.E337X
STAD	TCGA-BR-4366-01	GTF3C3	ENST00000263956.3	chr2	197637730:197637877:197639839:197639975:197640733:197640835,	197639840	197639975	197639881	197639881	Nonsense_Mutation	G	C	p.S597X
STAD	TCGA-BR-8485-01	UPK1A	ENST00000379013.2,ENST00000222275.2	chr19	36159355:36159556:36164133:36164208:36164339:36164447,	36164134	36164208	36164136	36164136	Nonsense_Mutation	C	A	p.Y96X
STAD	TCGA-F1-6874-01	NVL	ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000469075.1,ENST00000281701.6	chr1	224437913:224438020:224455735:224455835:224463040:224463160,	224455736	224455835	224455820	224455820	Nonsense_Mutation	G	A	p.R700X
STAD	TCGA-F1-6874-01	CRISPLD1	ENST00000517786.1,ENST00000262207.4,ENST00000523524.1	chr8	75927046:75927147:75928799:75928940:75929115:75929176,	75928800	75928940	75928931	75928931	Nonsense_Mutation	C	T	p.Q287X
STAD	TCGA-F1-6874-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923693	158923693	Nonsense_Mutation	C	T	p.Q1000X
STAD	TCGA-F1-6874-01	RNF25	ENST00000295704.2,ENST00000463188.1,ENST00000473034.1	chr2	219529549:219529596:219529877:219529970:219530638:219530779,	219529878	219529970	219529955	219529955	Nonsense_Mutation	G	A	p.Q197X
STAD	TCGA-F1-6874-01	ATP9A	ENST00000402822.1,ENST00000338821.5	chr20	50342357:50342471:50346372:50346517:50384840:50384867,	50346373	50346517	50346505	50346505	Nonsense_Mutation	C	T	p.W27X
STAD	TCGA-F1-6874-01	POLR1C	ENST00000481352.2,ENST00000372389.3,ENST00000304004.3	chr6	43488069:43488165:43488362:43488512:43488669:43488786,	43488363	43488512	43488475	43488475	Nonsense_Mutation	C	A	p.C256X
STAD	TCGA-F1-6874-01	SIPA1L2	ENST00000262861.4,ENST00000308942.4,ENST00000366630.1	chr1	232579347:232579431:232581274:232581532:232596632:232596907,	232581275	232581532	232581405	232581405	Nonsense_Mutation	G	A	p.Q1075X
STAD	TCGA-F1-6874-01	MLF1	ENST00000478894.2,ENST00000482628.1,ENST00000355893.5,ENST00000469452.1,ENST00000471745.1,ENST00000359117.5,ENST00000484955.1,ENST00000392822.3,ENST00000497004.1,ENST00000491767.1	chr3	158317802:158317962:158320595:158320728:158322885:158322981,	158320596	158320728	158320655	158320655	Nonsense_Mutation	C	T	p.R241X
STAD	TCGA-F1-6874-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3214290:3214436:3215684:3215862:3216836:3216938,	3215685	3215862	3215825	3215825	Nonsense_Mutation	C	A	p.C2305X
STAD	TCGA-BR-8286-01	SUSD4	ENST00000483818.1,ENST00000494793.2,ENST00000608996.1,ENST00000344029.6,ENST00000478605.1,ENST00000366878.4	chr1	223441843:223442017:223465780:223465993:223536619:223536679,	223465781	223465993	223465898	223465898	Nonsense_Mutation	G	A	p.R82X
STAD	TCGA-FP-8099-01	SIRT1	ENST00000432464.1,ENST00000212015.6,ENST00000406900.1,ENST00000403579.1	chr10	69669012:69669199:69672230:69672788:69676021:69678143,	69672231	69672788	69672419	69672419	Nonsense_Mutation	C	T	p.R516X
STAD	TCGA-D7-A4YY-01	MGAT4A	ENST00000393487.1,ENST00000409391.1,ENST00000484936.1	chr2	99291497:99291638:99294766:99294934:99342701:99343030,	99294767	99294934	99294914	99294914	Nonsense_Mutation	G	A	p.R39X
STAD	TCGA-D7-A4YY-01	LRP1B	ENST00000389484.3	chr2	141747100:141747226:141751563:141751704:141762903:141763026,	141751564	141751704	141751623	141751623	Nonsense_Mutation	C	T	p.W862X
STAD	TCGA-HU-A4H4-01	PHF11	ENST00000378319.3,ENST00000496612.1,ENST00000426879.1,ENST00000488958.1,ENST00000467763.1,ENST00000465045.1,ENST00000357596.3,ENST00000442195.1	chr13	50092153:50092287:50095029:50095076:50096178:50096196,	50095030	50095076	50095043	50095043	Nonsense_Mutation	C	T	p.Q158X
STAD	TCGA-HU-A4H4-01	PREPL	ENST00000409936.1	chr2	44573437:44573529:44586635:44587177:44588518:44588632,	44586636	44587177	44586851	44586851	Nonsense_Mutation	G	A	p.Q2X
STAD	TCGA-HU-A4H4-01	PREPL	ENST00000410081.1	chr2	44573437:44573529:44586635:44586889:44588662:44588944,44573437:44573529:44586635:44586889:44588518:44588632,	44586636	44586889	44586851	44586851	Nonsense_Mutation	G	A	p.Q2X
STAD	TCGA-D7-5578-01	HEPACAM2	ENST00000440868.1,ENST00000492616.1	chr7	92825140:92825214:92826553:92826591:92826797:92826923,	92826554	92826591	92826556	92826556	Nonsense_Mutation	G	T	p.S400X
STAD	TCGA-BR-7196-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097694	27097694	Nonsense_Mutation	C	T	p.Q1095X
STAD	TCGA-BR-7196-01	PANK1	ENST00000307534.4	chr10	91359008:91359262:91371452:91371805:91404356:91405215,	91371453	91371805	91371722	91371722	Nonsense_Mutation	C	A	p.E263X
STAD	TCGA-CD-A486-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000531080.1,ENST00000532057.1,ENST00000526785.1,ENST00000530013.1,ENST00000530401.1,ENST00000448981.2	chr11	33770322:33770438:33772084:33772207:33773068:33773153,	33772085	33772207	33772191	33772191	Nonsense_Mutation	C	A	p.E276X
STAD	TCGA-CD-A486-01	MARCH5	ENST00000462465.1	chr10	94070891:94071094:94100429:94100560:94109105:94109180,94093263:94093382:94100429:94100560:94109105:94109180,	94100430	94100560	94100524	94100524	Nonsense_Mutation	G	A	p.W111X
STAD	TCGA-BR-8361-01	CALCR	ENST00000360249.4,ENST00000394441.1,ENST00000359558.2,ENST00000426151.1,ENST00000421592.1	chr7	93067521:93067582:93072915:93073069:93090132:93090259,	93072916	93073069	93072952	93072952	Nonsense_Mutation	T	A	p.K290X
STAD	TCGA-BR-8361-01	ZNF554	ENST00000317243.5,ENST00000591265.1	chr19	2823037:2823110:2827614:2827741:2832300:2832492,	2827615	2827741	2827741	2827741	Nonsense_Mutation	G	T	p.E85X
STAD	TCGA-BR-8361-01	POLK	ENST00000509126.1,ENST00000515295.1,ENST00000380481.3,ENST00000241436.4,ENST00000511527.1,ENST00000510815.2,ENST00000514141.1,ENST00000505975.1,ENST00000503479.2,ENST00000504026.1	chr5	74872604:74872758:74877033:74877273:74879117:74879242,	74877034	74877273	74877075	74877075	Nonsense_Mutation	C	T	p.R246X
STAD	TCGA-BR-8361-01	CLN3	ENST00000566083.1,ENST00000565316.1,ENST00000565688.1,ENST00000359984.7,ENST00000567963.1,ENST00000569430.1,ENST00000563874.1,ENST00000360019.2,ENST00000395653.4,ENST00000333496.9,ENST00000564574.1,ENST00000568452.1,ENST00000566824.1,ENST00000354630.5,ENST00000561689.1,ENST00000535392.1,ENST00000357857.9	chr16	28495326:28495439:28497667:28497811:28497898:28497971,	28497668	28497811	28497797	28497797	Nonsense_Mutation	C	T	p.W183X
STAD	TCGA-BR-8361-01	ANKZF1	ENST00000461731.1,ENST00000465550.1,ENST00000410034.3,ENST00000409849.1,ENST00000323348.5,ENST00000467884.1,ENST00000477479.1,ENST00000463792.1,ENST00000496346.1	chr2	220098007:220098155:220098436:220098665:220098854:220099010,	220098437	220098665	220098560	220098560	Nonsense_Mutation	C	T	p.Q315X
STAD	TCGA-BR-8361-01	MEDAG	ENST00000380482.4	chr13	31495154:31495263:31495697:31495983:31498447:31498586,	31495698	31495983	31495959	31495959	Nonsense_Mutation	C	T	p.R255X
STAD	TCGA-BR-8361-01	CCBE1	ENST00000589116.1,ENST00000439986.4	chr18	57106774:57106810:57106908:57107048:57115214:57115335,	57106909	57107048	57106992	57106992	Nonsense_Mutation	G	A	p.Q278X
STAD	TCGA-BR-8361-01	ITPR2	ENST00000381340.3	chr12	26839413:26839565:26848538:26848583:26864105:26864201,	26848539	26848583	26848568	26848568	Nonsense_Mutation	G	A	p.R323X
STAD	TCGA-BR-8361-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Nonsense_Mutation	A	T	p.K209X
STAD	TCGA-BR-8682-01	GRIA1	ENST00000448073.4,ENST00000340592.5,ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153078426:153078633:153085256:153085627:153143993:153144192,	153085257	153085627	153085359	153085359	Nonsense_Mutation	A	T	p.K529X
STAD	TCGA-BR-8682-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
STAD	TCGA-CD-A4MG-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R485X
STAD	TCGA-CD-A4MG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254421	9254421	Nonsense_Mutation	C	T	p.R386X
STAD	TCGA-CD-A4MG-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601209	28601209	Nonsense_Mutation	G	A	p.R218X
STAD	TCGA-CD-A4MG-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117190	72117190	Nonsense_Mutation	G	T	p.G653X
STAD	TCGA-CD-A4MG-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117190	72117190	Nonsense_Mutation	G	T	p.G653X
STAD	TCGA-CD-A4MG-01	RBKS	ENST00000444339.2,ENST00000302188.3,ENST00000449378.1	chr2	28055552:28055644:28065933:28066098:28069908:28069971,	28065934	28066098	28065937	28065937	Nonsense_Mutation	C	A	p.G171X
STAD	TCGA-CD-A4MG-01	DDB1	ENST00000540166.1,ENST00000545930.1,ENST00000539712.1,ENST00000540784.1,ENST00000539739.1,ENST00000301764.7,ENST00000535174.1	chr11	61089066:61089169:61089767:61089884:61090482:61090566,	61089768	61089884	61089821	61089821	Nonsense_Mutation	C	A	p.G357X
STAD	TCGA-CD-A4MG-01	SYNCRIP	ENST00000355238.6,ENST00000369622.3	chr6	86328535:86328657:86328985:86329135:86332199:86332405,	86328986	86329135	86329093	86329093	Nonsense_Mutation	C	A	p.E351X
STAD	TCGA-CD-A4MG-01	LENG8	ENST00000376526.4,ENST00000439657.1,ENST00000431846.1,ENST00000326764.5	chr19	54965608:54965861:54966129:54966271:54966542:54966622,	54966130	54966271	54966171	54966171	Nonsense_Mutation	C	T	p.R241X
STAD	TCGA-CD-A4MG-01	TYRO3	ENST00000560227.1,ENST00000263798.3,ENST00000559066.1	chr15	41857223:41857339:41859557:41859735:41860414:41860463,	41859558	41859735	41859581	41859581	Nonsense_Mutation	G	A	p.W269X
STAD	TCGA-CD-A4MG-01	UBA2	ENST00000586313.1,ENST00000246548.4,ENST00000590048.2,ENST00000439527.2	chr19	34925772:34925873:34929549:34929671:34934748:34934816,	34929550	34929671	34929589	34929589	Nonsense_Mutation	C	T	p.Q167X
STAD	TCGA-CD-A4MG-01	CYB5R1	ENST00000482572.1,ENST00000367249.4,ENST00000446185.1	chr1	202933739:202933823:202934498:202934628:202935014:202935121,	202934499	202934628	202934505	202934505	Nonsense_Mutation	C	A	p.G157X
STAD	TCGA-CD-A4MG-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949323	116949323	Nonsense_Mutation	C	T	p.R485X
STAD	TCGA-CD-A4MG-01	PHTF1	ENST00000447664.2	chr1	114255900:114256060:114267380:114267515:114269039:114269080,114254561:114254735:114267380:114267515:114269039:114269080,	114267381	114267515	114267508	114267508	Nonsense_Mutation	G	A	p.R166X
STAD	TCGA-CD-A4MG-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73786098:73786269:73799388:73800551:73826527:73826648,	73799389	73800551	73800417	73800417	Nonsense_Mutation	C	T	p.R3804X
STAD	TCGA-CD-A4MG-01	PGM3	ENST00000505470.1	chr6	83898463:83898517:83900527:83900733:83902897:83902950,83898463:83898517:83900527:83900733:83900905:83901042,83898332:83898513:83900527:83900733:83902897:83902950,	83900528	83900733	83900647	83900647	Nonsense_Mutation	G	A	p.R57X
STAD	TCGA-D7-6527-01	CHCHD2	ENST00000473095.1	chr7	56170559:56170704:56171918:56172168:56174056:56174124,	56171919	56172168	56171922	56171922	Nonsense_Mutation	G	T	p.Y99X
STAD	TCGA-EQ-5647-01	ADAT1	ENST00000307921.3,ENST00000566445.1	chr16	75642121:75642221:75642740:75642886:75646140:75646759,	75642741	75642886	75642762	75642762	Nonsense_Mutation	G	A	p.R390X
STAD	TCGA-HU-A4G8-01	PPP2R3B	ENST00000468169.1,ENST00000390665.3	chrX	302041:302131:302617:302666:306250:306361,	302618	302666	302619	302619	Nonsense_Mutation	G	A	p.R362X
STAD	TCGA-HU-A4G8-01	PPP2R3B	ENST00000484364.1	chrX	302041:302131:302617:302972:306250:306361,	302618	302972	302619	302619	Nonsense_Mutation	G	A	p.R362X
STAD	TCGA-HU-A4G8-01	ZKSCAN3	ENST00000377255.3	chr6	28318048:28318165:28327301:28327765:28329100:28329248,	28327302	28327765	28327511	28327511	Nonsense_Mutation	C	T	p.R50X
STAD	TCGA-HU-A4G8-01	EPB42	ENST00000441366.2,ENST00000300215.3,ENST00000540029.1,ENST00000567019.1,ENST00000563128.1	chr15	43494041:43494175:43495312:43495473:43498527:43498827,	43495313	43495473	43495432	43495432	Nonsense_Mutation	G	A	p.R584X
STAD	TCGA-HU-A4G8-01	BAHD1	ENST00000560846.1,ENST00000561234.1,ENST00000416165.1	chr15	40754113:40754493:40756059:40756219:40756669:40756746,	40756060	40756219	40756081	40756081	Nonsense_Mutation	C	T	p.R613X
STAD	TCGA-HU-A4G8-01	ZNF750	ENST00000572562.1	chr17	80787804:80788753:80788894:80789362:80797802:80797898,	80788895	80789362	80789298	80789298	Nonsense_Mutation	G	A	p.Q345X
STAD	TCGA-HU-A4G8-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659393	43659393	Nonsense_Mutation	C	T	p.R354X
STAD	TCGA-HU-A4G8-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078722	117078722	Nonsense_Mutation	G	A	p.Q165X
STAD	TCGA-HU-A4G8-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228401141:228401411:228401874:228402135:228402490:228402799,	228401875	228402135	228402120	228402120	Nonsense_Mutation	C	T	p.Q502X
STAD	TCGA-CD-8527-01	TRAFD1	ENST00000257604.5,ENST00000412615.2	chr12	112585877:112586108:112587554:112587675:112589604:112589944,	112587555	112587675	112587666	112587666	Nonsense_Mutation	A	T	p.R424X
STAD	TCGA-HU-A4H6-01	FRMD6	ENST00000554167.1,ENST00000344768.5,ENST00000554495.1,ENST00000395718.2,ENST00000356218.4	chr14	52171466:52171653:52174795:52174951:52178248:52178314,	52174796	52174951	52174910	52174910	Nonsense_Mutation	C	T	p.R225X
STAD	TCGA-CD-5813-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95186024:95186224:95186329:95186488:95188768:95188907,	95186330	95186488	95186360	95186360	Nonsense_Mutation	T	A	p.K185X
STAD	TCGA-CD-5801-01	ST5	ENST00000526099.1,ENST00000534127.1,ENST00000526757.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1,ENST00000533020.1	chr11	8732391:8732461:8732668:8732778:8734097:8734267,	8732669	8732778	8732693	8732693	Nonsense_Mutation	C	T	p.W753X
STAD	TCGA-CG-4466-01	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000469607.1,ENST00000329066.4,ENST00000422464.1,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3,ENST00000346956.3	chr2	1497573:1497811:1499760:1499969:1500366:1500537,	1499761	1499969	1499798	1499798	Nonsense_Mutation	C	T	p.Q682X
STAD	TCGA-CG-4466-01	GBE1	ENST00000489715.1,ENST00000429644.2	chr3	81635242:81635341:81640187:81640315:81643058:81643174,	81640188	81640315	81640313	81640313	Nonsense_Mutation	G	A	p.Q371X
STAD	TCGA-CG-4466-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436586	16436586	Nonsense_Mutation	G	A	p.R536X
STAD	TCGA-BR-6852-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262X
STAD	TCGA-BR-6852-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262X
STAD	TCGA-BR-6852-01	TSR2	ENST00000375151.4	chrX	54469832:54469924:54470440:54470617:54470848:54471920,	54470441	54470617	54470537	54470537	Nonsense_Mutation	A	T	p.K121X
STAD	TCGA-BR-6852-01	DNAJC15	ENST00000379221.2	chr13	43643065:43643139:43652747:43652824:43659903:43659974,	43652748	43652824	43652796	43652796	Nonsense_Mutation	C	T	p.R95X
STAD	TCGA-BR-6852-01	SPATA5L1	ENST00000559860.1,ENST00000305560.6,ENST00000531970.1	chr15	45702570:45702728:45706768:45706978:45707784:45707977,	45706769	45706978	45706832	45706832	Nonsense_Mutation	G	T	p.G500X
STAD	TCGA-BR-6852-01	CDAN1	ENST00000356231.3	chr15	43024530:43024606:43025294:43025384:43026135:43026245,	43025295	43025384	43025362	43025362	Nonsense_Mutation	G	A	p.R464X
STAD	TCGA-BR-6852-01	MTIF2	ENST00000446660.1,ENST00000263629.4,ENST00000417741.1,ENST00000403721.1	chr2	55489451:55489563:55490775:55491001:55494704:55494740,	55490776	55491001	55490842	55490842	Nonsense_Mutation	C	T	p.W51X
STAD	TCGA-BR-4256-01	EPB41L2	ENST00000368128.2,ENST00000530481.1,ENST00000525193.1,ENST00000528282.1,ENST00000529208.1,ENST00000445890.2,ENST00000525271.1,ENST00000392427.3,ENST00000527411.1,ENST00000527659.1,ENST00000337057.3	chr6	131229960:131230003:131247744:131247849:131276244:131276457,	131247745	131247849	131247750	131247750	Nonsense_Mutation	G	A	p.Q269X
STAD	TCGA-BR-4256-01	PDS5B	ENST00000450460.1,ENST00000498550.1,ENST00000315596.10	chr13	33252971:33253066:33258014:33258160:33261270:33261422,	33258015	33258160	33258137	33258137	Nonsense_Mutation	A	T	p.R394X
STAD	TCGA-BR-6707-01	RNF217	ENST00000560949.1	chr6	125292646:125292744:125366356:125366590:125379087:125379252,125284453:125284572:125366356:125366590:125379087:125379252,	125366357	125366590	125366470	125366470	Nonsense_Mutation	C	G	p.Y40X
STAD	TCGA-CG-4441-01	ARPP21	ENST00000425289.1	chr3	35756934:35756968:35758789:35758853:35763096:35763123,	35758790	35758853	35758839	35758839	Nonsense_Mutation	C	T	p.Q329X
STAD	TCGA-CG-4441-01	ARPP21	ENST00000417925.1,ENST00000458225.1,ENST00000187397.4,ENST00000446068.2,ENST00000481854.1	chr3	35756934:35756968:35758789:35758849:35763096:35763123,	35758790	35758849	35758839	35758839	Nonsense_Mutation	C	T	p.Q329X
STAD	TCGA-BR-4184-01	ITGA3	ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48141891:48141971:48145419:48145669:48148207:48148294,	48145420	48145669	48145498	48145498	Nonsense_Mutation	C	T	p.R165X
STAD	TCGA-BR-4184-01	PRC1	ENST00000394249.3,ENST00000442656.2,ENST00000555455.1,ENST00000361188.5,ENST00000361919.3	chr15	91513633:91513744:91517365:91517476:91517814:91517961,	91517366	91517476	91517404	91517404	Nonsense_Mutation	G	A	p.R475X
STAD	TCGA-BR-4184-01	TRIM3	ENST00000345851.3,ENST00000359518.3,ENST00000537602.1,ENST00000525074.1,ENST00000536344.1	chr11	6472121:6472290:6472500:6472668:6477301:6477374,	6472501	6472668	6472626	6472626	Nonsense_Mutation	G	A	p.R526X
STAD	TCGA-BR-4184-01	ATRN	ENST00000262919.5	chr20	3581600:3581671:3584751:3584909:3596474:3596594,3581592:3581671:3584751:3584909:3605157:3605219,	3584752	3584909	3584894	3584894	Nonsense_Mutation	G	A	p.W1262X
STAD	TCGA-BR-4184-01	FAM227B	ENST00000561116.1	chr15	49881972:49882204:49903411:49903465:49907317:49907368,49880212:49880280:49903411:49903465:49907317:49907368,	49903412	49903465	49903459	49903459	Nonsense_Mutation	G	A	p.Q20X
STAD	TCGA-BR-4184-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265781	75265781	Nonsense_Mutation	C	T	p.R1261X
STAD	TCGA-BR-4184-01	SENP1	ENST00000551330.1,ENST00000552189.1,ENST00000339976.6,ENST00000549518.1,ENST00000004980.5,ENST00000549595.1,ENST00000448372.1	chr12	48468472:48468576:48477373:48477545:48482583:48482743,	48477374	48477545	48477397	48477397	Nonsense_Mutation	G	A	p.R177X
STAD	TCGA-BR-4184-01	GTSE1	ENST00000454366.1	chr22	46709786:46709910:46711928:46712309:46719086:46719159,	46711929	46712309	46712231	46712231	Nonsense_Mutation	C	T	p.R452X
STAD	TCGA-BR-4184-01	TRMT1L	ENST00000367506.5,ENST00000367504.3	chr1	185109104:185109354:185112488:185112568:185113037:185113161,	185112489	185112568	185112528	185112528	Nonsense_Mutation	G	A	p.R274X
STAD	TCGA-BR-4184-01	MCTP1	ENST00000429576.2,ENST00000503301.1	chr5	94259666:94259726:94267657:94267696:94275787:94275880,94248562:94248681:94267657:94267696:94275787:94275880,	94267658	94267696	94267673	94267673	Nonsense_Mutation	C	T	p.W399X
STAD	TCGA-BR-4184-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000557060.1,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64540705:64540854:64542662:64542818:64545183:64545324,	64542663	64542818	64542723	64542723	Nonsense_Mutation	C	T	p.R3643X
STAD	TCGA-BR-4184-01	UBE2Q1	ENST00000292211.4,ENST00000491572.1	chr1	154523428:154523480:154523872:154523968:154524246:154524277,	154523873	154523968	154523896	154523896	Nonsense_Mutation	G	A	p.R383X
STAD	TCGA-BR-4184-01	KDM3A	ENST00000441719.1,ENST00000312912.5,ENST00000427678.1,ENST00000409556.1,ENST00000409064.1,ENST00000452034.1	chr2	86669170:86669356:86676929:86677085:86678225:86678246,	86676930	86677085	86677062	86677062	Nonsense_Mutation	C	T	p.R107X
STAD	TCGA-BR-4184-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R485X
STAD	TCGA-BR-4184-01	SLC20A1	ENST00000456264.1	chr2	113410278:113410375:113414698:113414818:113416401:113416664,113410465:113410524:113414698:113414818:113416401:113416664,	113414699	113414818	113414818	113414818	Nonsense_Mutation	C	T	p.R260X
STAD	TCGA-BR-4184-01	ABTB1	ENST00000232744.8,ENST00000393363.3,ENST00000475042.1,ENST00000497162.1,ENST00000453791.2,ENST00000468137.1	chr3	127396019:127396129:127396307:127396406:127396518:127396686,	127396308	127396406	127396374	127396374	Nonsense_Mutation	C	T	p.R277X
STAD	TCGA-CG-4442-01	TCAIM	ENST00000342649.4,ENST00000412611.2,ENST00000417768.1,ENST00000417237.1	chr3	44409023:44409200:44434346:44434469:44437891:44437989,	44434347	44434469	44434453	44434453	Nonsense_Mutation	C	T	p.Q227X
STAD	TCGA-CG-4442-01	KLHL20	ENST00000209884.4	chr1	173685141:173685205:173702851:173703425:173720902:173721061,	173702852	173703425	173702865	173702865	Nonsense_Mutation	C	T	p.R13X
STAD	TCGA-CG-4442-01	GRIA4	ENST00000533094.1	chr11	105804667:105804695:105836673:105836788:105842640:105842755,105804667:105804695:105836673:105836788:105845036:105845157,105816189:105816228:105836673:105836788:105845036:105845157,	105836674	105836788	105836774	105836774	Nonsense_Mutation	G	T	p.G799X
STAD	TCGA-CG-4442-01	SLC44A1	ENST00000374723.1,ENST00000470972.1,ENST00000374724.1,ENST00000374720.3	chr9	108072029:108072147:108097843:108097980:108110638:108110732,	108097844	108097980	108097858	108097858	Nonsense_Mutation	T	A	p.L95X
STAD	TCGA-CG-4442-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62598228:62598357:62598733:62598876:62599182:62599305,	62598734	62598876	62598853	62598853	Nonsense_Mutation	G	A	p.Q49X
STAD	TCGA-CG-4442-01	TNFRSF10A	ENST00000221132.3,ENST00000524158.1	chr8	23057398:23057430:23058017:23058113:23058199:23058273,	23058018	23058113	23058108	23058108	Nonsense_Mutation	C	A	p.G237X
STAD	TCGA-CG-4442-01	MED16	ENST00000592943.1,ENST00000312090.6,ENST00000395808.3,ENST00000325464.1,ENST00000589119.1,ENST00000269814.4,ENST00000606248.1	chr19	886054:886201:889637:889807:890136:890423,	889638	889807	889762	889762	Nonsense_Mutation	C	T	p.W108X
STAD	TCGA-CG-4442-01	SETDB2	ENST00000317257.8,ENST00000354234.4	chr13	50059765:50059859:50062425:50062766:50064957:50065046,	50062426	50062766	50062611	50062611	Nonsense_Mutation	C	T	p.R600X
STAD	TCGA-CG-4442-01	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212515529:212515622:212519144:212519275:212520688:212520748,	212519145	212519275	212519208	212519208	Nonsense_Mutation	C	T	p.R213X
STAD	TCGA-CG-4442-01	SLC4A8	ENST00000358657.3,ENST00000535225.2,ENST00000604314.1,ENST00000453097.2,ENST00000551071.1,ENST00000394856.1,ENST00000514353.3,ENST00000319957.6	chr12	51864175:51864309:51865070:51865316:51868125:51868231,	51865071	51865316	51865099	51865099	Nonsense_Mutation	C	T	p.R563X
STAD	TCGA-CG-4442-01	KATNA1	ENST00000367411.2,ENST00000335647.5	chr6	149916012:149916370:149918198:149918325:149918642:149918777,	149918199	149918325	149918302	149918302	Nonsense_Mutation	G	A	p.R392X
STAD	TCGA-CG-4442-01	CHRND	ENST00000412233.1,ENST00000457943.2,ENST00000441621.2,ENST00000258385.3,ENST00000536614.1,ENST00000446616.1	chr2	233391242:233391384:233392110:233392155:233392971:233393049,	233392111	233392155	233392150	233392150	Nonsense_Mutation	G	T	p.E80X
STAD	TCGA-HU-A4HD-01	ARHGAP6	ENST00000534860.1,ENST00000303025.6,ENST00000380736.1,ENST00000337414.4	chrX	11160352:11160433:11162099:11162368:11174648:11174746,	11162100	11162368	11162141	11162141	Nonsense_Mutation	G	C	p.S712X
STAD	TCGA-HU-A4HD-01	MED6	ENST00000556495.1,ENST00000256379.5,ENST00000440435.2,ENST00000556423.1,ENST00000430055.2,ENST00000554870.1	chr14	71063327:71063415:71064334:71064494:71067332:71067360,71063327:71063419:71064334:71064494:71067332:71067360,	71064335	71064494	71064347	71064347	Nonsense_Mutation	A	T	p.L57X
STAD	TCGA-BR-6566-01	RIBC1	ENST00000375327.3	chrX	53454950:53455032:53455230:53455575:53456801:53456920,	53455231	53455575	53455530	53455530	Nonsense_Mutation	C	T	p.Q167X
STAD	TCGA-BR-6566-01	NETO1	ENST00000299430.2,ENST00000583169.1,ENST00000327305.6	chr18	70451035:70451141:70461351:70461479:70461597:70461639,	70461352	70461479	70461450	70461450	Nonsense_Mutation	C	A	p.G181X
STAD	TCGA-FP-8211-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000475273.2,ENST00000356327.5,ENST00000440204.1,ENST00000342215.6,ENST00000498278.1	chr3	171443807:171443866:171451233:171451299:171452654:171452760,	171451234	171451299	171451290	171451290	Nonsense_Mutation	C	A	p.E184X
STAD	TCGA-FP-8211-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351872	156351872	Nonsense_Mutation	C	A	p.S331X
STAD	TCGA-HU-A4GT-01	CIZ1	ENST00000357558.5,ENST00000277465.4	chr9	130940987:130941183:130941267:130941694:130942693:130942802,	130941268	130941694	130941408	130941408	Nonsense_Mutation	G	A	p.Q390X
STAD	TCGA-HU-A4GT-01	CIZ1	ENST00000372948.3,ENST00000372954.1	chr9	130940987:130941183:130941351:130941694:130942693:130942802,	130941352	130941694	130941408	130941408	Nonsense_Mutation	G	A	p.Q390X
STAD	TCGA-HU-A4GT-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491997	107491997	Nonsense_Mutation	C	T	p.Q477X
STAD	TCGA-HU-A4GT-01	PHF20	ENST00000374000.4,ENST00000339089.6,ENST00000486408.1,ENST00000374012.3	chr20	34435271:34435356:34450934:34451322:34457359:34457473,34446223:34446303:34450934:34451322:34457359:34457473,	34450935	34451322	34451082	34451082	Nonsense_Mutation	C	T	p.R190X
STAD	TCGA-HU-A4GT-01	DDX47	ENST00000541537.1,ENST00000358007.3	chr12	12976136:12976253:12976803:12976950:12977473:12977611,	12976804	12976950	12976903	12976903	Nonsense_Mutation	C	T	p.R284X
STAD	TCGA-HU-A4GT-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326076	89326076	Nonsense_Mutation	C	T	p.R381X
STAD	TCGA-HU-A4GT-01	NF1	ENST00000487476.1,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29490203:29490394:29496908:29497015:29508439:29508507,	29496909	29497015	29497003	29497003	Nonsense_Mutation	C	T	p.R192X
STAD	TCGA-HU-A4GT-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87680094:87680226:87683879:87684343:87685745:87685877,	87683880	87684343	87684104	87684104	Nonsense_Mutation	C	T	p.Q1260X
STAD	TCGA-HU-A4GT-01	DYNC1H1	ENST00000360184.4	chr14	102453789:102453969:102455039:102455189:102457863:102458010,	102455040	102455189	102455091	102455091	Nonsense_Mutation	C	T	p.Q924X
STAD	TCGA-HU-A4GT-01	CDK15	ENST00000450471.2,ENST00000460149.1,ENST00000260967.2,ENST00000374598.4,ENST00000434439.1,ENST00000410091.3	chr2	202719596:202719660:202737000:202737049:202744750:202744890,	202737001	202737049	202737024	202737024	Nonsense_Mutation	C	T	p.R345X
STAD	TCGA-BR-A4J4-01	PHYH	ENST00000263038.4,ENST00000479604.1,ENST00000453759.2,ENST00000396913.2,ENST00000396920.3	chr10	13333830:13333912:13336427:13336596:13337495:13337606,	13336428	13336596	13336443	13336443	Nonsense_Mutation	G	T	p.Y133X
STAD	TCGA-CG-5724-01	HACL1	ENST00000456194.2,ENST00000435217.2,ENST00000422591.1,ENST00000383779.4,ENST00000321169.5,ENST00000451445.2	chr3	15609938:15610093:15613174:15613276:15614665:15614749,	15613175	15613276	15613246	15613246	Nonsense_Mutation	G	A	p.Q342X
STAD	TCGA-BR-7722-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44912387:44912601:44913956:44914132:44914417:44914545,	44913957	44914132	44913993	44913993	Nonsense_Mutation	G	A	p.Q862X
STAD	TCGA-CD-8530-01	ADD3	ENST00000356080.4,ENST00000277900.8,ENST00000475954.1	chr10	111765561:111765909:111860382:111860606:111872534:111872652,111768009:111768057:111860382:111860606:111872534:111872652,	111860383	111860606	111860580	111860580	Nonsense_Mutation	C	T	p.R57X
STAD	TCGA-BR-8678-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579406	Nonsense_Mutation	G	C	p.S94X
STAD	TCGA-BR-7959-01	TGM3	ENST00000381458.5	chr20	2308765:2309011:2312647:2312956:2315761:2315919,	2312648	2312956	2312665	2312665	Nonsense_Mutation	C	T	p.Q451X
STAD	TCGA-BR-7959-01	UBAP2L	ENST00000271877.7,ENST00000465855.1,ENST00000428931.1,ENST00000343815.6,ENST00000433615.1,ENST00000428595.1,ENST00000361546.2,ENST00000475373.1	chr1	154232423:154232505:154233367:154233585:154234067:154234173,	154233368	154233585	154233469	154233469	Nonsense_Mutation	C	T	p.Q894X
STAD	TCGA-HU-A4H3-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000537033.1,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152615094:152615262:152621775:152621916:152623003:152623198,	152621776	152621916	152621778	152621778	Nonsense_Mutation	G	A	p.Q5894X
STAD	TCGA-HU-A4H3-01	CBX1	ENST00000495350.1,ENST00000225603.4,ENST00000402583.1	chr17	46153362:46153540:46154226:46154403:46178629:46178649,	46154227	46154403	46154279	46154279	Nonsense_Mutation	G	A	p.R30X
STAD	TCGA-HU-A4H3-01	FBXL7	ENST00000504595.1,ENST00000329673.7,ENST00000510662.1	chr5	15616091:15616181:15927998:15928610:15936558:15937295,	15927999	15928610	15928475	15928475	Nonsense_Mutation	C	T	p.R202X
STAD	TCGA-HU-A4H3-01	DOCK6	ENST00000587656.1,ENST00000294618.7,ENST00000319867.7	chr19	11322668:11322827:11323851:11324004:11324950:11325085,	11323852	11324004	11323941	11323941	Nonsense_Mutation	G	A	p.R1468X
STAD	TCGA-HU-A4H3-01	NKIRAS1	ENST00000416026.2	chr3	23942298:23942540:23952301:23952412:23958274:23958415,	23952302	23952412	23952392	23952392	Nonsense_Mutation	C	A	p.G2X
STAD	TCGA-HU-A4H3-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000548440.1,ENST00000355831.2,ENST00000392783.2	chr2	160181321:160181465:160182163:160182429:160189050:160189197,	160182164	160182429	160182228	160182228	Nonsense_Mutation	G	A	p.Q2049X
STAD	TCGA-D7-8579-01	TNFAIP3	ENST00000237289.4	chr6	138195981:138196172:138196824:138196972:138197132:138197303,	138196825	138196972	138196897	138196897	Nonsense_Mutation	C	T	p.Q187X
STAD	TCGA-CD-5798-01	SHMT2	ENST00000553837.1,ENST00000553474.1,ENST00000556825.1,ENST00000557529.1,ENST00000555634.1,ENST00000557348.1,ENST00000557433.1,ENST00000328923.3,ENST00000555116.1,ENST00000555774.1,ENST00000555563.1,ENST00000414700.3,ENST00000393827.4,ENST00000557487.1,ENST00000449049.3	chr12	57626265:57626358:57626486:57626626:57626962:57627022,	57626487	57626626	57626616	57626616	Nonsense_Mutation	C	T	p.R283X
STAD	TCGA-BR-6565-01	TNS1	ENST00000479185.1	chr2	218713606:218713810:218745620:218747134:218749757:218749887,	218745621	218747134	218747129	218747129	Nonsense_Mutation	G	A	p.R293X
STAD	TCGA-BR-6565-01	DDX5	ENST00000583212.1,ENST00000225792.5,ENST00000583239.1,ENST00000581230.1,ENST00000578804.1,ENST00000585060.1,ENST00000578190.1,ENST00000577922.1,ENST00000584279.1,ENST00000581697.1,ENST00000579091.1,ENST00000581806.1	chr17	62500100:62500234:62500339:62500436:62500794:62500960,	62500340	62500436	62500356	62500356	Nonsense_Mutation	A	C	p.Y97X
STAD	TCGA-BR-6565-01	ECD	ENST00000454759.2,ENST00000372979.4,ENST00000484976.2	chr10	74899388:74899495:74906033:74906119:74908033:74908162,	74906034	74906119	74906052	74906052	Nonsense_Mutation	G	C	p.S370X
STAD	TCGA-CG-4474-01	HGF	ENST00000453411.1,ENST00000457544.2	chr7	81374315:81374436:81381435:81381563:81386504:81386619,	81381436	81381563	81381520	81381520	Nonsense_Mutation	G	A	p.R181X
STAD	TCGA-CG-4474-01	HGF	ENST00000444829.2,ENST00000222390.5	chr7	81374315:81374436:81381435:81381578:81386504:81386619,	81381436	81381578	81381520	81381520	Nonsense_Mutation	G	A	p.R181X
STAD	TCGA-CG-5727-01	PRMT2	ENST00000355680.3,ENST00000397638.2,ENST00000397637.1	chr21	48069609:48069651:48081711:48081848:48083294:48083466,48080744:48080874:48081711:48081848:48083294:48083466,	48081712	48081848	48081793	48081793	Nonsense_Mutation	C	T	p.Q348X
STAD	TCGA-CG-5727-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48081793	48081793	Nonsense_Mutation	C	T	p.Q348X
STAD	TCGA-CG-5727-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797371	75797371	Nonsense_Mutation	G	A	p.R3035X
STAD	TCGA-BR-4253-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087145	117087145	Nonsense_Mutation	A	T	p.L51X
STAD	TCGA-BR-6455-01	EPHX4	ENST00000370383.4	chr1	92498117:92498147:92508379:92508537:92511088:92511217,	92508380	92508537	92508453	92508453	Nonsense_Mutation	G	T	p.G131X
STAD	TCGA-IP-7968-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342X
STAD	TCGA-IP-7968-01	PRDM4	ENST00000228437.5	chr12	108140051:108140201:108145191:108145986:108147700:108147886,	108145192	108145986	108145867	108145867	Nonsense_Mutation	G	A	p.Q151X
STAD	TCGA-IP-7968-01	PRDM4	ENST00000550376.1	chr12	108140051:108140201:108145423:108145986:108147700:108147886,	108145424	108145986	108145867	108145867	Nonsense_Mutation	G	A	p.Q151X
STAD	TCGA-IP-7968-01	RRP36	ENST00000607394.1	chr6	42995097:42995215:42996829:42996928:43001590:43001709,	42996830	42996928	42996916	42996916	Nonsense_Mutation	C	T	p.R244X
STAD	TCGA-IP-7968-01	FAM129B	ENST00000373312.3,ENST00000373314.3	chr9	130270700:130270817:130271254:130271410:130272424:130272612,	130271255	130271410	130271314	130271314	Nonsense_Mutation	G	A	p.R420X
STAD	TCGA-F1-6177-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883674	4883674	Nonsense_Mutation	G	A	p.R338X
STAD	TCGA-F1-6177-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77473380	77473380	Nonsense_Mutation	G	A	p.R297X
STAD	TCGA-F1-6177-01	SPAG9	ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1,ENST00000511312.2	chr17	49054468:49054582:49057106:49057278:49059884:49060033,	49057107	49057278	49057239	49057239	Nonsense_Mutation	G	A	p.R1093X
STAD	TCGA-F1-6177-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998018	144998018	Nonsense_Mutation	G	A	p.R2164X
STAD	TCGA-F1-6177-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735156	155735156	Nonsense_Mutation	C	A	p.E1370X
STAD	TCGA-F1-6177-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4825499:4825604:4829630:4829823:4836748:4836871,	4829631	4829823	4829715	4829715	Nonsense_Mutation	C	T	p.R2219X
STAD	TCGA-F1-6177-01	VLDLR	ENST00000382099.2,ENST00000382100.3	chr9	2645573:2645745:2646333:2646552:2647473:2647592,	2646334	2646552	2646515	2646515	Nonsense_Mutation	C	T	p.R556X
STAD	TCGA-F1-6177-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30001145	30001145	Nonsense_Mutation	G	A	p.R1490X
STAD	TCGA-F1-6177-01	PHLPP2	ENST00000567016.1,ENST00000393524.2,ENST00000568954.1,ENST00000356272.3,ENST00000360429.3,ENST00000538126.1	chr16	71724421:71724612:71736500:71736634:71748414:71748704,	71736501	71736634	71736615	71736615	Nonsense_Mutation	G	A	p.R102X
STAD	TCGA-F1-6177-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15674666:15674765:15676541:15676675:15679346:15679480,	15676542	15676675	15676570	15676570	Nonsense_Mutation	G	A	p.R207X
STAD	TCGA-F1-6177-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204217948:204218098:204218311:204218392:204219673:204219742,	204218312	204218392	204218332	204218332	Nonsense_Mutation	G	A	p.Q552X
STAD	TCGA-F1-6177-01	RRP8	ENST00000533907.1	chr11	6621898:6622005:6622155:6622832:6623081:6623445,	6622156	6622832	6622581	6622581	Nonsense_Mutation	G	A	p.R239X
STAD	TCGA-F1-6177-01	RRP8	ENST00000254605.6	chr11	6622155:6622285:6622378:6622832:6623081:6623445,	6622379	6622832	6622581	6622581	Nonsense_Mutation	G	A	p.R239X
STAD	TCGA-F1-6177-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905X
STAD	TCGA-F1-6177-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905X
STAD	TCGA-F1-6177-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482172	150482172	Nonsense_Mutation	C	T	p.R53X
STAD	TCGA-F1-6177-01	ECM1	ENST00000369049.4	chr1	150482006:150482057:150482136:150482232:150482310:150482478,	150482137	150482232	150482172	150482172	Nonsense_Mutation	C	T	p.R53X
STAD	TCGA-F1-6177-01	ECM1	ENST00000346569.6,ENST00000369047.4	chr1	150482006:150482057:150482136:150482238:150482397:150482478,	150482137	150482238	150482172	150482172	Nonsense_Mutation	C	T	p.R53X
STAD	TCGA-CG-5717-01	SLC5A6	ENST00000310574.3,ENST00000408041.1,ENST00000461319.1,ENST00000488743.2	chr2	27423969:27423981:27424217:27424321:27424533:27424715,	27424218	27424321	27424276	27424276	Nonsense_Mutation	G	T	p.Y530X
STAD	TCGA-BR-7715-01	CSNK1A1	ENST00000504676.1,ENST00000261798.5,ENST00000515768.1,ENST00000515435.1,ENST00000503350.2,ENST00000377843.2,ENST00000606826.1,ENST00000606719.1	chr5	148889441:148889516:148891356:148891435:148892632:148892683,	148891357	148891435	148891431	148891431	Nonsense_Mutation	G	A	p.R229X
STAD	TCGA-HJ-7597-01	LOXL4	ENST00000260702.3	chr10	100015333:100015496:100016536:100016704:100017406:100017561,	100016537	100016704	100016575	100016575	Nonsense_Mutation	G	A	p.R464X
STAD	TCGA-HJ-7597-01	SRD5A3	ENST00000505210.1	chr4	56212578:56212724:56225512:56225655:56235998:56236142,	56225513	56225655	56225592	56225592	Nonsense_Mutation	G	T	p.G101X
STAD	TCGA-HJ-7597-01	CMIP	ENST00000537098.3,ENST00000539778.2,ENST00000398040.4,ENST00000566513.1	chr16	81694488:81694551:81697873:81697954:81703746:81703850,	81697874	81697954	81697934	81697934	Nonsense_Mutation	C	T	p.R269X
STAD	TCGA-HJ-7597-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132508321:132508486:132510190:132510349:132511981:132512076,	132510191	132510349	132510235	132510235	Nonsense_Mutation	C	T	p.R1634X
STAD	TCGA-HJ-7597-01	RABGGTA	ENST00000560871.1	chr14	24737574:24737626:24737719:24738032:24738116:24738199,	24737720	24738032	24737783	24737783	Nonsense_Mutation	G	A	p.Q315X
STAD	TCGA-HJ-7597-01	RABGGTA	ENST00000216840.6,ENST00000559551.1,ENST00000558376.1,ENST00000560998.1,ENST00000399409.3,ENST00000559974.1,ENST00000543002.1	chr14	24737574:24737626:24737719:24737825:24737930:24738032,	24737720	24737825	24737783	24737783	Nonsense_Mutation	G	A	p.Q315X
STAD	TCGA-CG-5721-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542843	24542843	Nonsense_Mutation	C	T	p.R102X
STAD	TCGA-CG-5721-01	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28610071:28610180:28611321:28611425:28622411:28622580,	28611322	28611425	28611391	28611391	Nonsense_Mutation	C	A	p.G414X
STAD	TCGA-CG-5721-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000488914.1,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41266016:41266244:41266444:41266698:41266824:41267047,	41266445	41266698	41266486	41266486	Nonsense_Mutation	C	T	p.R95X
STAD	TCGA-CG-5721-01	HIVEP1	ENST00000541134.1,ENST00000399469.2	chr6	12125978:12126103:12130999:12131175:12161671:12162124,	12131000	12131175	12131031	12131031	Nonsense_Mutation	C	T	p.R2081X
STAD	TCGA-CG-5721-01	C9orf135	ENST00000529446.1,ENST00000377197.3	chr9	72472824:72472893:72501753:72501811:72520869:72521110,	72501754	72501811	72501762	72501762	Nonsense_Mutation	T	A	p.L153X
STAD	TCGA-CG-5721-01	HADH	ENST00000309522.3,ENST00000403312.1,ENST00000507260.1,ENST00000454409.2,ENST00000505878.1,ENST00000603302.1	chr4	108935625:108935744:108940695:108940822:108944629:108944719,	108940696	108940822	108940769	108940769	Nonsense_Mutation	C	T	p.R165X
STAD	TCGA-CG-5721-01	KRT13	ENST00000468313.1,ENST00000464634.2	chr17	39659910:39659977:39661307:39661487:39661698:39661849,	39661308	39661487	39661386	39661386	Nonsense_Mutation	C	T	p.W139X
STAD	TCGA-CG-5721-01	TEFM	ENST00000580840.1,ENST00000581216.1	chr17	29227430:29227580:29231083:29231547:29233185:29233253,	29231084	29231547	29231314	29231314	Nonsense_Mutation	G	A	p.R89X
STAD	TCGA-CG-5721-01	STIP1	ENST00000537479.1,ENST00000305218.4,ENST00000544739.1,ENST00000538497.1,ENST00000358794.5,ENST00000538945.1	chr11	63964742:63964869:63964964:63965067:63965325:63965446,	63964965	63965067	63965054	63965054	Nonsense_Mutation	C	T	p.R297X
STAD	TCGA-BR-8679-01	GDAP1	ENST00000220822.7	chr8	75262678:75262813:75263508:75263701:75272371:75272483,	75263509	75263701	75263617	75263617	Nonsense_Mutation	G	T	p.E76X
STAD	TCGA-BR-8679-01	SOX30	ENST00000265007.6,ENST00000519442.1	chr5	157065237:157065730:157073644:157073824:157075664:157075904,	157073645	157073824	157073789	157073789	Nonsense_Mutation	G	A	p.R415X
STAD	TCGA-BR-8679-01	HINFP	ENST00000529354.1,ENST00000527410.1	chr11	118992325:118992349:118997644:118997835:119001434:119001553,	118997645	118997835	118997700	118997700	Nonsense_Mutation	C	T	p.Q16X
STAD	TCGA-BR-8679-01	FRA10AC1	ENST00000359204.4,ENST00000536233.1,ENST00000371430.2,ENST00000394100.2	chr10	95436409:95436448:95441236:95441355:95443812:95443855,	95441237	95441355	95441293	95441293	Nonsense_Mutation	G	C	p.S244X
STAD	TCGA-D7-5577-01	MYO3A	ENST00000265944.5	chr10	26465629:26465774:26482133:26482240:26490193:26490234,	26482134	26482240	26482178	26482178	Nonsense_Mutation	C	T	p.R1495X
STAD	TCGA-D7-5577-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45849964:45850125:45852969:45853209:45855945:45856024,	45852970	45853209	45852980	45852980	Nonsense_Mutation	G	T	p.C1036X
STAD	TCGA-D7-5577-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101054	27101054	Nonsense_Mutation	C	T	p.R1446X
STAD	TCGA-BR-8484-01	ACVR2A	ENST00000404590.1	chr2	148602184:148602275:148602642:148602776:148653869:148654077,	148602643	148602776	148602741	148602741	Nonsense_Mutation	T	A	p.L7X
STAD	TCGA-HU-A4H0-01	ROCK1	ENST00000399799.2	chr18	18572791:18572898:18586311:18586558:18586659:18586751,	18586312	18586558	18586552	18586552	Nonsense_Mutation	C	A	p.E549X
STAD	TCGA-HU-A4H0-01	NELFCD	ENST00000460601.1,ENST00000344018.3,ENST00000602795.1	chr20	57568536:57568599:57568678:57568819:57569164:57569246,	57568679	57568819	57568760	57568760	Nonsense_Mutation	C	T	p.R526X
STAD	TCGA-CD-A48C-01	PLEKHA4	ENST00000596982.1	chr19	49363606:49363716:49364657:49364758:49368759:49368814,	49364658	49364758	49364712	49364712	Nonsense_Mutation	G	T	p.Y104X
STAD	TCGA-BR-7197-01	P2RX2	ENST00000389110.3,ENST00000536121.1,ENST00000542301.1,ENST00000348800.5,ENST00000343948.4,ENST00000535910.1	chr12	133196043:133196160:133196264:133196336:133196429:133196505,	133196265	133196336	133196330	133196330	Nonsense_Mutation	C	A	p.C125X
STAD	TCGA-BR-7197-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
STAD	TCGA-BR-A452-01	STAP2	ENST00000597593.1,ENST00000594605.1,ENST00000599736.1,ENST00000602007.1,ENST00000600324.1	chr19	4325212:4325305:4325392:4325542:4326938:4326949,	4325393	4325542	4325405	4325405	Nonsense_Mutation	C	A	p.E323X
STAD	TCGA-BR-8487-01	ITSN1	ENST00000399367.3,ENST00000381291.4,ENST00000487427.1,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35191544:35191627:35195790:35195957:35199121:35199167,	35195791	35195957	35195847	35195847	Nonsense_Mutation	C	T	p.Q1025X
STAD	TCGA-BR-8487-01	PPM1F	ENST00000397495.4	chr22	22293903:22294052:22300214:22300480:22307163:22307193,	22300215	22300480	22300339	22300339	Nonsense_Mutation	G	A	p.Q28X
STAD	TCGA-BR-8487-01	WNT4	ENST00000542383.1,ENST00000290167.6	chr1	22446520:22447010:22447703:22447846:22447937:22448069,	22447704	22447846	22447841	22447841	Nonsense_Mutation	G	A	p.Q151X
STAD	TCGA-BR-8487-01	TFE3	ENST00000315869.7,ENST00000493583.1,ENST00000487451.1	chrX	48888911:48889059:48890979:48891055:48891240:48891297,	48890980	48891055	48891041	48891041	Nonsense_Mutation	G	A	p.R359X
STAD	TCGA-BR-8487-01	ITIH1	ENST00000540715.1,ENST00000273283.2,ENST00000537050.1	chr3	52820310:52820450:52820960:52821115:52821203:52821218,	52820961	52821115	52821010	52821010	Nonsense_Mutation	C	T	p.Q595X
STAD	TCGA-BR-8487-01	ERC1	ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1100463:1100488:1136913:1137738:1192329:1192746,1100432:1100653:1136913:1137738:1192329:1192746,	1136914	1137738	1137661	1137661	Nonsense_Mutation	C	T	p.R198X
STAD	TCGA-BR-8487-01	ERC1	ENST00000592048.1	chr12	1100428:1100653:1137504:1137738:1192329:1192746,	1137505	1137738	1137661	1137661	Nonsense_Mutation	C	T	p.R198X
STAD	TCGA-BR-8487-01	SLC25A26	ENST00000536651.1,ENST00000464350.2	chr3	66420952:66421026:66428113:66428494:66428833:66428926,	66428114	66428494	66428187	66428187	Nonsense_Mutation	C	T	p.R261X
STAD	TCGA-BR-8487-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143093049	143093049	Nonsense_Mutation	G	A	p.R943X
STAD	TCGA-BR-8487-01	CSTF3	ENST00000323959.4	chr11	33107440:33107535:33108533:33108687:33112077:33112273,	33108534	33108687	33108546	33108546	Nonsense_Mutation	G	A	p.R595X
STAD	TCGA-BR-8487-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77276441:77276576:77284746:77284941:77286897:77287080,	77284747	77284941	77284891	77284891	Nonsense_Mutation	C	T	p.Q1021X
STAD	TCGA-BR-8487-01	CHST15	ENST00000435907.1,ENST00000346248.5	chr10	125771848:125771996:125780771:125780928:125798030:125798135,	125780772	125780928	125780849	125780849	Nonsense_Mutation	G	A	p.Q424X
STAD	TCGA-BR-8487-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27518167:27518477:27519860:27519976:27523069:27523222,	27519861	27519976	27519890	27519890	Nonsense_Mutation	G	A	p.R405X
STAD	TCGA-BR-8487-01	ABCC3	ENST00000510891.1,ENST00000513745.1,ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48752991:48753136:48753243:48753451:48753638:48753650,	48753244	48753451	48753397	48753397	Nonsense_Mutation	C	T	p.Q1005X
STAD	TCGA-BR-8487-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233X
STAD	TCGA-BR-8487-01	TRAF7	ENST00000326181.6,ENST00000564067.1	chr16	2221572:2221606:2222191:2222375:2222465:2222590,	2222192	2222375	2222338	2222338	Nonsense_Mutation	C	T	p.R208X
STAD	TCGA-BR-8487-01	TSSK4	ENST00000287913.6,ENST00000556621.1	chr14	24675714:24675929:24676351:24676715:24677169:24677454,	24676352	24676715	24676542	24676542	Nonsense_Mutation	C	T	p.R221X
STAD	TCGA-BR-8487-01	IGFBP7	ENST00000295666.4,ENST00000512512.1	chr4	57896938:57897502:57898591:57898718:57899360:57899477,	57898592	57898718	57898658	57898658	Nonsense_Mutation	C	A	p.G255X
STAD	TCGA-BR-8487-01	MDN1	ENST00000428876.1,ENST00000369393.3	chr6	90394594:90394704:90395545:90395692:90396620:90396742,	90395546	90395692	90395561	90395561	Nonsense_Mutation	G	A	p.Q3902X
STAD	TCGA-BR-8487-01	TNC	ENST00000535648.1,ENST00000350763.4,ENST00000345230.3,ENST00000346706.3	chr9	117848142:117849552:117852840:117853433:117880260:117880478,	117852841	117853433	117852871	117852871	Nonsense_Mutation	C	A	p.G143X
STAD	TCGA-BR-6454-01	EPB41L4B	ENST00000374566.3	chr9	111945008:111945077:111947768:111947885:111954557:111954635,	111947769	111947885	111947780	111947780	Nonsense_Mutation	T	A	p.K803X
STAD	TCGA-BR-6454-01	F8	ENST00000360256.4	chrX	154156845:154159951:154175972:154176182:154182166:154182317,	154175973	154176182	154176146	154176146	Nonsense_Mutation	G	T	p.S647X
STAD	TCGA-BR-6454-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86311859	86311859	Nonsense_Mutation	C	A	p.G395X
STAD	TCGA-CD-8528-01	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844528	27844528	Nonsense_Mutation	C	T	p.Q588X
STAD	TCGA-BR-7703-01	CNTN3	ENST00000263665.6	chr3	74414716:74414853:74418339:74418524:74419039:74419142,	74418340	74418524	74418379	74418379	Nonsense_Mutation	G	A	p.R303X
STAD	TCGA-BR-7703-01	CDCP1	ENST00000425231.2,ENST00000296129.1	chr3	45151964:45152333:45153574:45153937:45159903:45160110,	45153575	45153937	45153659	45153659	Nonsense_Mutation	C	A	p.G191X
STAD	TCGA-BR-7703-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R485X
STAD	TCGA-BR-7703-01	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31137596	31137596	Nonsense_Mutation	G	A	p.R580X
STAD	TCGA-BR-7703-01	KRTDAP	ENST00000479340.1,ENST00000338897.3	chr19	35979342:35979387:35979563:35979605:35979703:35979738,	35979564	35979605	35979569	35979569	Nonsense_Mutation	G	A	p.R55X
STAD	TCGA-BR-7703-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220338	29220338	Nonsense_Mutation	G	A	p.W1489X
STAD	TCGA-BR-4280-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59811947	59811947	Nonsense_Mutation	G	A	p.W114X
STAD	TCGA-BR-4280-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860859	96860859	Nonsense_Mutation	C	T	p.Q671X
STAD	TCGA-HF-7132-01	TPD52L1	ENST00000528193.1,ENST00000534199.1,ENST00000392483.2,ENST00000392482.2,ENST00000534000.1,ENST00000368402.5,ENST00000532429.1,ENST00000532978.1,ENST00000524679.1,ENST00000527711.1,ENST00000368388.2,ENST00000534368.1,ENST00000304877.13	chr6	125541223:125541339:125550263:125550412:125569427:125569506,	125550264	125550412	125550288	125550288	Nonsense_Mutation	C	T	p.R54X
STAD	TCGA-HF-7132-01	SNRNP200	ENST00000323853.5,ENST00000429650.1,ENST00000497539.1	chr2	96943276:96943453:96943544:96943688:96943974:96944096,	96943545	96943688	96943574	96943574	Nonsense_Mutation	G	A	p.Q1909X
STAD	TCGA-HF-7132-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41362664:41362745:41364046:41364256:41365625:41365693,	41364047	41364256	41364223	41364223	Nonsense_Mutation	G	A	p.R477X
STAD	TCGA-HF-7132-01	SPRED2	ENST00000440972.1	chr2	65561762:65561907:65571852:65572030:65659095:65659218,	65571853	65572030	65571870	65571870	Nonsense_Mutation	G	A	p.R63X
STAD	TCGA-HF-7132-01	SERPINE2	ENST00000447280.2,ENST00000258405.4,ENST00000432738.1,ENST00000409840.3,ENST00000409304.1	chr2	224856519:224856717:224862831:224863059:224866358:224866639,	224862832	224863059	224863030	224863030	Nonsense_Mutation	T	A	p.K109X
STAD	TCGA-HF-7132-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72833925:72834028:72845475:72845676:72845803:72845937,	72845476	72845676	72845607	72845607	Nonsense_Mutation	G	A	p.Q1245X
STAD	TCGA-HF-7132-01	PRKAR2A	ENST00000296446.8	chr3	48789021:48789151:48789608:48789750:48793811:48793877,48789017:48789151:48789608:48789750:48802436:48802511,	48789609	48789750	48789613	48789613	Nonsense_Mutation	G	T	p.C359X
STAD	TCGA-HF-7132-01	SEMA3A	ENST00000436949.1,ENST00000265362.4	chr7	83689780:83689874:83739785:83739905:83758438:83758501,	83739786	83739905	83739842	83739842	Nonsense_Mutation	C	A	p.G133X
STAD	TCGA-HF-7132-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47887640	47887640	Nonsense_Mutation	G	A	p.R237X
STAD	TCGA-HF-7132-01	PSME1	ENST00000559123.1,ENST00000558112.1,ENST00000206451.6,ENST00000382708.3,ENST00000561435.1,ENST00000560420.1	chr14	24606908:24607006:24607257:24607326:24607404:24607472,	24607258	24607326	24607279	24607279	Nonsense_Mutation	C	T	p.Q138X
STAD	TCGA-HF-7132-01	PRKRIP1	ENST00000462601.1,ENST00000482549.1,ENST00000397912.3,ENST00000482465.1,ENST00000496391.1,ENST00000469763.1	chr7	102039994:102040095:102045044:102045130:102065460:102065893,102039994:102040095:102045044:102045130:102047880:102047945,	102045045	102045130	102045105	102045105	Nonsense_Mutation	C	T	p.Q123X
STAD	TCGA-HF-7132-01	FAM208A	ENST00000431842.2,ENST00000355628.5,ENST00000493960.2,ENST00000459993.1	chr3	56658506:56658671:56658855:56659034:56661064:56661098,	56658856	56659034	56658877	56658877	Nonsense_Mutation	G	A	p.R1433X
STAD	TCGA-HF-7132-01	TIMM17A	ENST00000484647.1,ENST00000478378.1	chr1	201924637:201924680:201926408:201926508:201926638:201926702,	201926409	201926508	201926416	201926416	Nonsense_Mutation	C	T	p.R12X
STAD	TCGA-HF-7132-01	NOTUM	ENST00000409678.3	chr17	79912131:79912179:79913272:79913420:79914525:79914626,	79913273	79913420	79913388	79913388	Nonsense_Mutation	C	A	p.E341X
STAD	TCGA-HF-7132-01	TFB1M	ENST00000367166.4	chr6	155578806:155579042:155581406:155581534:155606291:155606333,155579110:155579216:155581406:155581534:155606291:155606333,	155581407	155581534	155581417	155581417	Nonsense_Mutation	G	A	p.R262X
STAD	TCGA-HF-7132-01	TFB1M	ENST00000495806.1	chr6	155579110:155579216:155581406:155581702:155606291:155606333,	155581407	155581702	155581417	155581417	Nonsense_Mutation	G	A	p.R262X
STAD	TCGA-HF-7132-01	SPEF2	ENST00000509059.1,ENST00000282469.6,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35659151:35659309:35667173:35667361:35670160:35670329,	35667174	35667361	35667345	35667345	Nonsense_Mutation	C	T	p.R447X
STAD	TCGA-BR-8680-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107968362:107968481:107969132:107969256:107974916:107975629,	107969133	107969256	107969212	107969212	Nonsense_Mutation	G	T	p.E702X
STAD	TCGA-BR-8680-01	CDC7	ENST00000428239.1,ENST00000234626.6,ENST00000430031.2	chr1	91981350:91981433:91985686:91985836:91989597:91990056,	91985687	91985836	91985809	91985809	Nonsense_Mutation	G	T	p.E435X
STAD	TCGA-BR-8680-01	IGFBP1	ENST00000275525.3	chr7	45930152:45930316:45931530:45931659:45932558:45933252,	45931531	45931659	45931546	45931546	Nonsense_Mutation	G	T	p.E179X
STAD	TCGA-BR-8680-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108202605:108202764:108203488:108203627:108204612:108204635,	108203489	108203627	108203492	108203492	Nonsense_Mutation	C	T	p.R2598X
STAD	TCGA-BR-8680-01	ANKRD45	ENST00000333279.2	chr1	173596203:173596298:173615984:173616152:173628229:173628572,	173615985	173616152	173616051	173616051	Nonsense_Mutation	C	A	p.E144X
STAD	TCGA-BR-8680-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021440	42021440	Nonsense_Mutation	C	T	p.R1246X
STAD	TCGA-BR-8680-01	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148925149:148925404:148926997:148927171:148927953:148928166,	148926998	148927171	148927157	148927157	Nonsense_Mutation	C	A	p.E208X
STAD	TCGA-BR-8680-01	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000434450.1,ENST00000324698.6	chr7	123104886:123105063:123109267:123109438:123119848:123120024,	123109268	123109438	123109360	123109360	Nonsense_Mutation	C	A	p.E497X
STAD	TCGA-BR-8680-01	ZNF92	ENST00000357512.2	chr7	64838793:64838913:64852814:64852941:64863253:64865994,	64852815	64852941	64852845	64852845	Nonsense_Mutation	G	T	p.E12X
STAD	TCGA-BR-8680-01	TACC2	ENST00000369001.1,ENST00000369000.1,ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000369004.3,ENST00000515273.1,ENST00000260733.3,ENST00000515603.1,ENST00000513429.1,ENST00000358010.1,ENST00000368999.1,ENST00000465600.1,ENST00000360561.3,ENST00000368997.3	chr10	124008564:124008671:124009058:124009179:124013505:124013852,	124009059	124009179	124009084	124009084	Nonsense_Mutation	C	T	p.R2896X
STAD	TCGA-BR-8680-01	RD3	ENST00000367002.4	chr1	211649863:211652669:211654461:211654771:211665109:211665373,	211654462	211654771	211654646	211654646	Nonsense_Mutation	G	A	p.R38X
STAD	TCGA-BR-8680-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000606321.1,ENST00000302349.5	chr12	123648496:123648637:123649848:123650024:123651201:123651336,	123649849	123650024	123649915	123649915	Nonsense_Mutation	C	A	p.E749X
STAD	TCGA-BR-8680-01	CYP2R1	ENST00000334636.5,ENST00000530609.1	chr11	14900659:14900753:14901681:14902314:14907321:14907387,14900659:14900989:14901681:14902314:14907321:14907387,	14901682	14902314	14901790	14901790	Nonsense_Mutation	C	A	p.E298X
STAD	TCGA-BR-8680-01	CYP2R1	ENST00000532378.1	chr11	14900659:14900989:14901681:14901905:14907321:14907387,	14901682	14901905	14901790	14901790	Nonsense_Mutation	C	A	p.E298X
STAD	TCGA-BR-8680-01	AKIRIN2	ENST00000257787.5	chr6	88385577:88385649:88387535:88387685:88391337:88391481,	88387536	88387685	88387650	88387650	Nonsense_Mutation	C	A	p.E139X
STAD	TCGA-BR-8680-01	NPTN	ENST00000351217.6,ENST00000564551.1,ENST00000563691.1,ENST00000287226.8,ENST00000545878.1,ENST00000565282.1,ENST00000562924.1,ENST00000345330.4	chr15	73862658:73862764:73866002:73866136:73925465:73925562,73862658:73862764:73866002:73866136:73879864:73879959,	73866003	73866136	73866030	73866030	Nonsense_Mutation	C	T	p.W271X
STAD	TCGA-BR-8680-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51524753	51524753	Nonsense_Mutation	C	A	p.E3391X
STAD	TCGA-BR-8680-01	SPATA17	ENST00000492747.2,ENST00000366933.4	chr1	217915320:217915440:217947675:217947879:217955515:217955650,	217947676	217947879	217947760	217947760	Nonsense_Mutation	C	T	p.R202X
STAD	TCGA-BR-8680-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115377213:115377312:115380362:115380467:115381627:115381939,	115380363	115380467	115380377	115380377	Nonsense_Mutation	C	A	p.E954X
STAD	TCGA-BR-8680-01	CAST	ENST00000504465.1,ENST00000506811.1,ENST00000309190.5,ENST00000338252.3,ENST00000512620.1,ENST00000505143.1,ENST00000325674.7,ENST00000511097.2,ENST00000508608.1,ENST00000510156.1,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000395813.1,ENST00000508197.1,ENST00000511049.1,ENST00000510756.1,ENST00000509903.1	chr5	96063192:96063234:96064856:96064913:96065315:96065395,	96064857	96064913	96064902	96064902	Nonsense_Mutation	G	T	p.E59X
STAD	TCGA-BR-8680-01	RAB34	ENST00000484161.1,ENST00000395242.2,ENST00000395243.3,ENST00000583538.1,ENST00000395245.3,ENST00000301043.6,ENST00000447716.1,ENST00000430132.2,ENST00000436730.3,ENST00000415040.2,ENST00000450529.1	chr17	27041690:27041728:27041810:27041918:27042049:27042140,	27041811	27041918	27041904	27041904	Nonsense_Mutation	C	A	p.E264X
STAD	TCGA-BR-8680-01	LY96	ENST00000518893.1	chr8	74917030:74917120:74922235:74922364:74939023:74939076,74903660:74903789:74922235:74922364:74939023:74939076,	74922236	74922364	74922307	74922307	Nonsense_Mutation	G	T	p.E92X
STAD	TCGA-BR-8680-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257880	158257880	Nonsense_Mutation	G	T	p.G609X
STAD	TCGA-BR-8680-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468223	86468223	Nonsense_Mutation	C	T	p.R465X
STAD	TCGA-BR-8680-01	YIPF4	ENST00000437765.1	chr2	32503299:32503303:32515551:32515705:32523302:32523380,	32515552	32515705	32515614	32515614	Nonsense_Mutation	G	T	p.E48X
STAD	TCGA-BR-8680-01	EFCAB2	ENST00000473686.1,ENST00000391837.3,ENST00000425550.1,ENST00000487845.1,ENST00000551317.1,ENST00000366521.3,ENST00000366522.2,ENST00000447569.2,ENST00000497591.1,ENST00000549220.1,ENST00000366523.1	chr1	245222687:245222760:245245384:245245464:245246743:245246786,	245245385	245245464	245245415	245245415	Nonsense_Mutation	C	T	p.R72X
STAD	TCGA-BR-8680-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086173	109086173	Nonsense_Mutation	G	T	p.E130X
STAD	TCGA-BR-8680-01	RBM18	ENST00000483428.1,ENST00000417201.3	chr9	125007534:125007620:125009796:125009883:125014125:125014252,	125009797	125009883	125009820	125009820	Nonsense_Mutation	G	A	p.R102X
STAD	TCGA-BR-8680-01	HSP90B1	ENST00000299767.5,ENST00000548462.1,ENST00000540297.2	chr12	104326058:104326196:104326603:104326720:104327733:104327768,	104326604	104326720	104326616	104326616	Nonsense_Mutation	G	T	p.E103X
STAD	TCGA-BR-8680-01	GLRX3	ENST00000481034.1,ENST00000368644.1	chr10	131934662:131934776:131943474:131943583:131958258:131958333,	131943475	131943583	131943557	131943557	Nonsense_Mutation	G	T	p.E59X
STAD	TCGA-BR-8680-01	EPHA4	ENST00000541600.1,ENST00000281821.2,ENST00000409854.1,ENST00000409938.1,ENST00000434266.1	chr2	222428998:222429114:222433437:222433505:222436877:222437001,	222433438	222433505	222433473	222433473	Nonsense_Mutation	C	A	p.E42X
STAD	TCGA-BR-8680-01	DPP6	ENST00000332007.3,ENST00000377770.3,ENST00000427557.1,ENST00000404039.1	chr7	154680981:154681054:154681166:154681240:154684043:154684248,	154681167	154681240	154681193	154681193	Nonsense_Mutation	G	T	p.E802X
STAD	TCGA-BR-8680-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000311027.5,ENST00000395344.3,ENST00000402192.2	chr11	47346021:47346128:47348288:47348358:47350208:47350255,	47348289	47348358	47348331	47348331	Nonsense_Mutation	C	T	p.R1589X
STAD	TCGA-BR-8680-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377203	77377203	Nonsense_Mutation	C	A	p.E1462X
STAD	TCGA-BR-8680-01	CD22	ENST00000270311.6,ENST00000598815.1,ENST00000419549.2,ENST00000085219.5,ENST00000536635.2,ENST00000594250.1,ENST00000341773.6,ENST00000544992.2,ENST00000601769.1	chr19	35832003:35832041:35832245:35832509:35832604:35832627,	35832246	35832509	35832350	35832350	Nonsense_Mutation	G	T	p.E538X
STAD	TCGA-BR-8680-01	ARIH2	ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000465217.1,ENST00000452385.1	chr3	49004638:49004708:49005966:49006088:49008027:49008077,	49005967	49006088	49006041	49006041	Nonsense_Mutation	G	T	p.E205X
STAD	TCGA-BR-8680-01	RFC5	ENST00000543153.1,ENST00000392542.2,ENST00000229043.3,ENST00000454402.2	chr12	118465766:118465835:118467575:118467630:118468986:118469241,	118467576	118467630	118467596	118467596	Nonsense_Mutation	C	T	p.R298X
STAD	TCGA-BR-8680-01	ANKEF1	ENST00000488991.1,ENST00000378392.1,ENST00000378380.3	chr20	10023769:10023969:10025041:10025191:10026221:10026345,	10025042	10025191	10025099	10025099	Nonsense_Mutation	C	T	p.R202X
STAD	TCGA-BR-8680-01	TUSC3	ENST00000506802.1,ENST00000511783.2,ENST00000382020.4,ENST00000503731.1	chr8	15531271:15531345:15588174:15588238:15601046:15601121,	15588175	15588238	15588214	15588214	Nonsense_Mutation	G	T	p.E280X
STAD	TCGA-BR-8680-01	BCS1L	ENST00000392110.2,ENST00000439945.1,ENST00000412366.1,ENST00000392111.2,ENST00000431802.1,ENST00000359273.3,ENST00000430322.1,ENST00000392109.1,ENST00000456050.1	chr2	219524457:219524466:219526128:219526268:219526481:219526639,219525661:219526030:219526128:219526268:219526481:219526639,	219526129	219526268	219526163	219526163	Nonsense_Mutation	C	T	p.R119X
STAD	TCGA-BR-8680-01	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49079387:49079595:49081222:49081448:49082370:49082531,	49081223	49081448	49081339	49081339	Nonsense_Mutation	G	T	p.C598X
STAD	TCGA-BR-8680-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000455749.1,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000374875.1,ENST00000265371.4	chr10	33542955:33543122:33545243:33545399:33552573:33552632,	33545244	33545399	33545355	33545355	Nonsense_Mutation	G	A	p.R235X
STAD	TCGA-BR-8680-01	CCDC171	ENST00000380701.3,ENST00000297641.3	chr9	15666160:15666321:15678755:15678894:15695232:15695335,	15678756	15678894	15678796	15678796	Nonsense_Mutation	G	T	p.E373X
STAD	TCGA-BR-8680-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43164382:43164600:43166346:43166593:43167003:43167109,	43166347	43166593	43166427	43166427	Nonsense_Mutation	G	T	p.E962X
STAD	TCGA-BR-8680-01	CPB2	ENST00000439329.3,ENST00000181383.4	chr13	46648007:46648112:46652934:46653036:46656575:46656684,	46652935	46653036	46653021	46653021	Nonsense_Mutation	C	A	p.E134X
STAD	TCGA-BR-8680-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409076.2	chr7	17833387:17833916:17836449:17836562:17838312:17838381,	17836450	17836562	17836501	17836501	Nonsense_Mutation	G	A	p.R859X
STAD	TCGA-BR-8680-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320408	46320408	Nonsense_Mutation	C	A	p.E1026X
STAD	TCGA-BR-8680-01	GFM2	ENST00000427854.2,ENST00000296805.3,ENST00000509430.1,ENST00000345239.2	chr5	74046403:74046492:74047192:74047318:74054673:74054771,	74047193	74047318	74047274	74047274	Nonsense_Mutation	G	A	p.R117X
STAD	TCGA-BR-8680-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111185	105111185	Nonsense_Mutation	G	A	p.R450X
STAD	TCGA-BR-8680-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951091	235951091	Nonsense_Mutation	C	T	p.R560X
STAD	TCGA-BR-8680-01	ZNF766	ENST00000599581.1	chr19	52772845:52772884:52785363:52785490:52786537:52786571,	52785364	52785490	52785394	52785394	Nonsense_Mutation	G	T	p.E17X
STAD	TCGA-BR-8680-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944236	235944236	Nonsense_Mutation	C	A	p.E1715X
STAD	TCGA-BR-8680-01	SEC11A	ENST00000558196.1,ENST00000560266.1,ENST00000560409.1,ENST00000455959.3,ENST00000268220.7,ENST00000558134.1	chr15	85213955:85214013:85230855:85231005:85234765:85234875,85223977:85224063:85230855:85231005:85234765:85234875,	85230856	85231005	85230953	85230953	Nonsense_Mutation	G	A	p.R72X
STAD	TCGA-BR-8680-01	AGGF1	ENST00000312916.7	chr5	76342171:76342502:76343985:76344097:76344760:76344812,	76343986	76344097	76344002	76344002	Nonsense_Mutation	G	A	p.W406X
STAD	TCGA-BR-8680-01	DPYD	ENST00000370192.3	chr1	97700407:97700550:97770814:97770934:97771732:97771853,	97770815	97770934	97770839	97770839	Nonsense_Mutation	G	A	p.R759X
STAD	TCGA-BR-8680-01	CC2D1B	ENST00000460261.1	chr1	52822055:52822114:52822672:52822846:52823197:52823370,	52822673	52822846	52822738	52822738	Nonsense_Mutation	G	A	p.R611X
STAD	TCGA-BR-8680-01	CC2D1B	ENST00000438831.1,ENST00000491136.2,ENST00000371586.2,ENST00000450942.2,ENST00000284376.3,ENST00000438021.1	chr1	52822055:52822114:52822672:52822798:52823197:52823370,	52822673	52822798	52822738	52822738	Nonsense_Mutation	G	A	p.R611X
STAD	TCGA-BR-8680-01	TAS1R1	ENST00000333172.6	chr1	6631000:6631275:6634690:6635452:6636474:6636687,	6634691	6635452	6634952	6634952	Nonsense_Mutation	G	T	p.E254X
STAD	TCGA-BR-8680-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	427271:427627:430160:430275:431582:431733,	430161	430275	430229	430229	Nonsense_Mutation	C	A	p.E825X
STAD	TCGA-BR-8680-01	IGF2BP2	ENST00000461957.1,ENST00000382199.2,ENST00000346192.3,ENST00000457616.2,ENST00000466476.1	chr3	185414399:185414451:185416086:185416135:185540940:185541001,	185416087	185416135	185416116	185416116	Nonsense_Mutation	G	A	p.R87X
STAD	TCGA-BR-8680-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088540	109088540	Nonsense_Mutation	C	T	p.R919X
STAD	TCGA-BR-8680-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831856	58831856	Nonsense_Mutation	C	T	p.R1017X
STAD	TCGA-BR-8680-01	ACYP2	ENST00000394666.3,ENST00000607452.1	chr2	54362589:54362606:54365775:54365885:54531824:54531996,	54365776	54365885	54365782	54365782	Nonsense_Mutation	G	T	p.E28X
STAD	TCGA-BR-8680-01	IL1B	ENST00000477398.1,ENST00000496280.1	chr2	113593142:113593194:113593759:113593821:113594284:113594356,	113593760	113593821	113593779	113593779	Nonsense_Mutation	C	A	p.E10X
STAD	TCGA-BR-8680-01	CPA2	ENST00000222481.4,ENST00000416698.1,ENST00000480781.1,ENST00000487259.1	chr7	129909508:129909643:129910532:129910628:129912915:129913017,	129910533	129910628	129910557	129910557	Nonsense_Mutation	G	T	p.E105X
STAD	TCGA-BR-8680-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412131	77412131	Nonsense_Mutation	C	A	p.E715X
STAD	TCGA-BR-8680-01	CLASP1	ENST00000409078.3,ENST00000474065.1,ENST00000263710.4,ENST00000541377.1,ENST00000397587.3,ENST00000455322.2	chr2	122260742:122260810:122273240:122273338:122283420:122283496,	122273241	122273338	122273335	122273335	Nonsense_Mutation	G	A	p.R184X
STAD	TCGA-BR-8680-01	FBXO33	ENST00000298097.7	chr14	39868769:39868991:39870379:39871065:39871604:39871715,	39870380	39871065	39870866	39870866	Nonsense_Mutation	G	A	p.R304X
STAD	TCGA-BR-8680-01	MRPL21	ENST00000565125.1,ENST00000362034.2,ENST00000541279.1,ENST00000567045.1,ENST00000450904.2	chr11	68660870:68660923:68663982:68664146:68665394:68665480,	68663983	68664146	68663994	68663994	Nonsense_Mutation	G	A	p.R129X
STAD	TCGA-BR-8680-01	MRPL21	ENST00000541265.1	chr11	68660870:68660923:68663936:68664146:68665394:68665480,	68663937	68664146	68663994	68663994	Nonsense_Mutation	G	A	p.R129X
STAD	TCGA-BR-8680-01	MRPL21	ENST00000544567.1	chr11	68660870:68660923:68663982:68664306:68665394:68665480,	68663983	68664306	68663994	68663994	Nonsense_Mutation	G	A	p.R129X
STAD	TCGA-BR-8680-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087177	89087177	Nonsense_Mutation	C	A	p.E1766X
STAD	TCGA-BR-8680-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684173	77684173	Nonsense_Mutation	C	T	p.R1305X
STAD	TCGA-BR-8680-01	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873660	35873660	Nonsense_Mutation	C	T	p.R206X
STAD	TCGA-BR-8680-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100533126:100533238:100568677:100568881:100587885:100588012,	100568678	100568881	100568703	100568703	Nonsense_Mutation	C	T	p.R1616X
STAD	TCGA-BR-8680-01	ANP32E	ENST00000436748.2	chr1	150202905:150203028:150204114:150204264:150208080:150208177,150201404:150201570:150204114:150204264:150208080:150208177,	150204115	150204264	150204192	150204192	Nonsense_Mutation	C	A	p.E43X
STAD	TCGA-BR-8680-01	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170591738	170591738	Nonsense_Mutation	G	T	p.E72X
STAD	TCGA-BR-8680-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62895352:62895478:62902065:62902260:62918294:62918419,	62902066	62902260	62902072	62902072	Nonsense_Mutation	G	T	p.E266X
STAD	TCGA-BR-8680-01	NEB	ENST00000413693.1,ENST00000509223.2	chr2	152350674:152350767:152352789:152352882:152359306:152359399,152350674:152350767:152352789:152352882:152353454:152353547,152350674:152350767:152352789:152352882:152359862:152359943,	152352790	152352882	152352870	152352870	Nonsense_Mutation	C	A	p.E8171X
STAD	TCGA-BR-8680-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71653942	71653942	Nonsense_Mutation	T	G	p.L1648X
STAD	TCGA-BR-8680-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102676053	102676053	Nonsense_Mutation	C	T	p.R547X
STAD	TCGA-BR-8680-01	BUB1B	ENST00000287598.6,ENST00000412359.3	chr15	40502310:40502411:40504699:40504849:40505532:40505675,	40504700	40504849	40504751	40504751	Nonsense_Mutation	G	T	p.E813X
STAD	TCGA-BR-8680-01	NAE1	ENST00000290810.3,ENST00000394074.2,ENST00000379463.2,ENST00000566663.1,ENST00000359087.4	chr16	66842891:66842978:66844276:66844316:66844599:66844602,	66844277	66844316	66844292	66844292	Nonsense_Mutation	C	A	p.E379X
STAD	TCGA-BR-8680-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3182241:3182378:3184080:3184197:3188323:3188446,	3184081	3184197	3184144	3184144	Nonsense_Mutation	C	T	p.R1605X
STAD	TCGA-BR-8680-01	CENPN	ENST00000299572.5	chr16	81051362:81051439:81053704:81053881:81056359:81056490,	81053705	81053881	81053750	81053750	Nonsense_Mutation	C	T	p.R134X
STAD	TCGA-BR-8680-01	DAO	ENST00000547166.1,ENST00000228476.3	chr12	109281225:109281340:109283244:109283321:109283983:109284049,	109283245	109283321	109283296	109283296	Nonsense_Mutation	G	T	p.E121X
STAD	TCGA-BR-8680-01	GORASP2	ENST00000452526.2,ENST00000471559.1,ENST00000442798.1,ENST00000234160.4	chr2	171807837:171807968:171811159:171811292:171812945:171813024,	171811160	171811292	171811194	171811194	Nonsense_Mutation	C	T	p.R201X
STAD	TCGA-BR-8680-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103094	61103094	Nonsense_Mutation	C	T	p.R579X
STAD	TCGA-BR-8680-01	PRG4	ENST00000367483.4,ENST00000445192.2,ENST00000367484.3	chr1	186270723:186270843:186273925:186274054:186275449:186275610,186273239:186273389:186273925:186274054:186275449:186275610,	186273926	186274054	186274033	186274033	Nonsense_Mutation	G	T	p.E193X
STAD	TCGA-BR-8680-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000557060.1,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64540705:64540854:64542662:64542818:64545183:64545324,	64542663	64542818	64542723	64542723	Nonsense_Mutation	C	T	p.R3643X
STAD	TCGA-BR-8680-01	NT5C3A	ENST00000405342.1,ENST00000396152.2,ENST00000409787.1,ENST00000456458.1,ENST00000464840.1	chr7	33063692:33063720:33066428:33066527:33102179:33102391,33063692:33063720:33066428:33066527:33075545:33075581,	33066429	33066527	33066500	33066500	Nonsense_Mutation	G	A	p.R61X
STAD	TCGA-BR-8680-01	MAP3K19	ENST00000437365.1,ENST00000358371.4,ENST00000375845.3	chr2	135738390:135739088:135741245:135741395:135743369:135744611,	135741246	135741395	135741299	135741299	Nonsense_Mutation	C	A	p.E1057X
STAD	TCGA-BR-8680-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150816	128150816	Nonsense_Mutation	C	A	p.E172X
STAD	TCGA-BR-8680-01	GDPD1	ENST00000581140.1,ENST00000578026.1,ENST00000581276.1,ENST00000284116.4	chr17	57335111:57335201:57344401:57344535:57348296:57348356,	57344402	57344535	57344492	57344492	Nonsense_Mutation	C	T	p.R223X
STAD	TCGA-BR-8680-01	CD1B	ENST00000368168.3	chr1	158299324:158299438:158299641:158299920:158300585:158300815,	158299642	158299920	158299693	158299693	Nonsense_Mutation	G	A	p.R186X
STAD	TCGA-BR-8680-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17379187	17379187	Nonsense_Mutation	G	T	p.E580X
STAD	TCGA-BR-8680-01	CA8	ENST00000317995.4	chr8	61099905:61102544:61121308:61121478:61135207:61135320,	61121309	61121478	61121466	61121466	Nonsense_Mutation	G	A	p.R251X
STAD	TCGA-BR-8680-01	ALMS1	ENST00000423048.1	chr2	73682288:73682422:73716760:73717285:73746901:73747143,	73716761	73717285	73717091	73717091	Nonsense_Mutation	C	T	p.R2668X
STAD	TCGA-BR-8680-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717091	73717091	Nonsense_Mutation	C	T	p.R2668X
STAD	TCGA-BR-8680-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58129199:58129340:58131647:58131776:58132546:58132720,	58131648	58131776	58131773	58131773	Nonsense_Mutation	G	T	p.E1882X
STAD	TCGA-BR-8680-01	PTDSS1	ENST00000518776.1,ENST00000517309.1	chr8	97296336:97296381:97299249:97299374:97307325:97307484,	97299250	97299374	97299345	97299345	Nonsense_Mutation	C	T	p.R138X
STAD	TCGA-BR-8680-01	GMNN	ENST00000230056.3,ENST00000378054.2,ENST00000356509.3	chr6	24784314:24784397:24784671:24784782:24785865:24785935,	24784672	24784782	24784681	24784681	Nonsense_Mutation	G	T	p.E123X
STAD	TCGA-BR-8680-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962834:72962954:72965029:72965209:72965291:72965387,	72965030	72965209	72965072	72965072	Nonsense_Mutation	C	T	p.R978X
STAD	TCGA-BR-8680-01	SPIRE1	ENST00000309836.5,ENST00000410092.3,ENST00000440472.2,ENST00000464481.1,ENST00000453447.2,ENST00000383356.2	chr18	12464866:12464957:12479697:12479870:12493070:12493148,	12479698	12479870	12479831	12479831	Nonsense_Mutation	G	T	p.S424X
STAD	TCGA-BR-8680-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778948	64778948	Nonsense_Mutation	G	T	p.E114X
STAD	TCGA-BR-8680-01	SORCS3	ENST00000369701.3	chr10	106865154:106865273:106899154:106899244:106907374:106907554,	106899155	106899244	106899200	106899200	Nonsense_Mutation	G	T	p.E420X
STAD	TCGA-BR-8680-01	CREM	ENST00000495960.1	chr10	35437328:35437419:35467799:35467914:35468061:35468204,	35467800	35467914	35467886	35467886	Nonsense_Mutation	G	T	p.E80X
STAD	TCGA-BR-8680-01	CREM	ENST00000482633.1,ENST00000489388.1,ENST00000461968.1	chr10	35437328:35437419:35467816:35467914:35468061:35468204,35416089:35416121:35467816:35467914:35468061:35468204,	35467817	35467914	35467886	35467886	Nonsense_Mutation	G	T	p.E80X
STAD	TCGA-BR-8680-01	ARPP21	ENST00000187397.4	chr3	35732416:35732497:35748465:35748574:35756930:35756968,35732416:35732497:35748465:35748574:35750460:35750562,	35748466	35748574	35748563	35748563	Nonsense_Mutation	G	T	p.E262X
STAD	TCGA-BR-8680-01	WRNIP1	ENST00000380769.4,ENST00000380764.1,ENST00000380773.4	chr6	2769006:2769116:2770353:2770595:2779496:2779726,	2770354	2770595	2770510	2770510	Nonsense_Mutation	C	T	p.R391X
STAD	TCGA-BR-8680-01	WRNIP1	ENST00000380771.4	chr6	2769006:2769116:2770428:2770595:2779496:2779726,	2770429	2770595	2770510	2770510	Nonsense_Mutation	C	T	p.R391X
STAD	TCGA-BR-8680-01	PER3	ENST00000361923.2,ENST00000377532.3	chr1	7863110:7863213:7863751:7863908:7868952:7869058,	7863752	7863908	7863904	7863904	Nonsense_Mutation	C	T	p.R377X
STAD	TCGA-BR-8680-01	SLC5A6	ENST00000310574.3,ENST00000412471.1,ENST00000408041.1,ENST00000488743.2	chr2	27429350:27429402:27429744:27429810:27430125:27430658,	27429745	27429810	27429798	27429798	Nonsense_Mutation	G	A	p.R136X
STAD	TCGA-BR-8680-01	ZFP82	ENST00000392161.3	chr19	36882861:36885012:36896481:36896574:36898788:36898915,	36896482	36896574	36896524	36896524	Nonsense_Mutation	C	A	p.E63X
STAD	TCGA-BR-8680-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631976	116631976	Nonsense_Mutation	C	A	p.E117X
STAD	TCGA-BR-7716-01	TRPS1	ENST00000519076.1,ENST00000520276.1,ENST00000220888.5,ENST00000395715.3	chr8	116430557:116430680:116599227:116599831:116616099:116616277,	116599228	116599831	116599425	116599425	Nonsense_Mutation	C	A	p.E835X
STAD	TCGA-BR-8081-01	BRD4	ENST00000360016.5,ENST00000597315.1	chr19	15379823:15379853:15383625:15383944:15443100:15443254,	15383626	15383944	15383721	15383721	Nonsense_Mutation	G	A	p.Q64X
STAD	TCGA-BR-8081-01	CRLS1	ENST00000452938.1	chr20	5996006:5996136:6012657:6012726:6015109:6015169,	6012658	6012726	6012658	6012658	Nonsense_Mutation	C	T	p.R221X
STAD	TCGA-BR-8081-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46439462:46439602:46455023:46455178:46456398:46456587,	46455024	46455178	46455113	46455113	Nonsense_Mutation	G	A	p.R966X
STAD	TCGA-BR-8081-01	FBXO33	ENST00000298097.7	chr14	39868769:39868991:39870379:39871065:39871604:39871715,	39870380	39871065	39870866	39870866	Nonsense_Mutation	G	A	p.R304X
STAD	TCGA-BR-8081-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233712230:233712281:233714971:233715119:233721502:233723318,	233714972	233715119	233715062	233715062	Nonsense_Mutation	C	T	p.Q1280X
STAD	TCGA-BR-8081-01	CTTN	ENST00000301843.8	chr11	70265851:70265962:70266505:70266616:70269045:70269101,70265851:70265962:70266505:70266616:70267575:70267642,	70266506	70266616	70266595	70266595	Nonsense_Mutation	C	T	p.Q257X
STAD	TCGA-BR-8081-01	PLD3	ENST00000409735.4,ENST00000409587.1,ENST00000409281.1,ENST00000356508.5,ENST00000409419.1	chr19	40876016:40876144:40877579:40877780:40880387:40880527,	40877580	40877780	40877625	40877625	Nonsense_Mutation	C	T	p.R242X
STAD	TCGA-BR-8081-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091558	143091558	Nonsense_Mutation	G	A	p.R1440X
STAD	TCGA-CG-5726-01	HDDC2	ENST00000608295.1	chr6	125598247:125598386:125619795:125619962:125621683:125621805,	125619796	125619962	125619868	125619868	Nonsense_Mutation	G	A	p.R101X
STAD	TCGA-CG-5726-01	HDDC2	ENST00000398153.2	chr6	125613986:125614055:125619859:125619962:125621683:125621805,	125619860	125619962	125619868	125619868	Nonsense_Mutation	G	A	p.R101X
STAD	TCGA-CG-5726-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170413696:170413807:170416896:170417295:170419734:170419860,	170416897	170417295	170417153	170417153	Nonsense_Mutation	G	A	p.R239X
STAD	TCGA-CG-5726-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
STAD	TCGA-CG-5726-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903916	5903916	Nonsense_Mutation	C	T	p.Q376X
STAD	TCGA-CG-5726-01	PHF11	ENST00000378319.3,ENST00000426879.1,ENST00000488958.1,ENST00000495157.1,ENST00000465045.1,ENST00000357596.3,ENST00000488605.1	chr13	50096178:50096243:50097310:50097377:50098220:50098352,	50097311	50097377	50097359	50097359	Nonsense_Mutation	G	T	p.E207X
STAD	TCGA-HU-A4GX-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288840	33288840	Nonsense_Mutation	G	A	p.R250X
STAD	TCGA-HU-A4GX-01	SART3	ENST00000431469.2	chr12	108931263:108931371:108931840:108931979:108932720:108932865,108930483:108930561:108931840:108931979:108932709:108932865,	108931841	108931979	108931976	108931976	Nonsense_Mutation	G	A	p.R356X
STAD	TCGA-HU-A4GX-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047721	96047721	Nonsense_Mutation	C	T	p.R113X
STAD	TCGA-HU-A4GX-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54547174:54547396:54591152:54591339:54603018:54603136,	54591153	54591339	54591218	54591218	Nonsense_Mutation	C	T	p.R1198X
STAD	TCGA-HU-A4GX-01	MTHFR	ENST00000376583.3,ENST00000376590.3,ENST00000376585.1,ENST00000376592.1	chr1	11854414:11854595:11854785:11854920:11855154:11855405,	11854786	11854920	11854880	11854880	Nonsense_Mutation	G	A	p.R358X
STAD	TCGA-CG-5728-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285159	217285159	Nonsense_Mutation	C	T	p.R334X
STAD	TCGA-CG-5728-01	ALDH1A1	ENST00000376939.1,ENST00000493113.1,ENST00000419959.1,ENST00000446946.1,ENST00000482210.1	chr9	75545794:75545935:75555063:75555168:75567850:75567878,	75555064	75555168	75555148	75555148	Nonsense_Mutation	C	T	p.W29X
STAD	TCGA-CG-5728-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101504245:101504533:101520078:101520833:101525896:101525970,	101520079	101520833	101520160	101520160	Nonsense_Mutation	C	T	p.R59X
STAD	TCGA-CG-5728-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883674	4883674	Nonsense_Mutation	G	A	p.R338X
STAD	TCGA-CG-5728-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000567239.1	chr16	69660305:69660431:69680930:69681489:69687138:69687331,	69680931	69681489	69681374	69681374	Nonsense_Mutation	C	T	p.R233X
STAD	TCGA-CG-5728-01	TNIK	ENST00000538048.1,ENST00000460047.1,ENST00000488470.1,ENST00000284483.8,ENST00000436636.2	chr3	170855979:170856168:170857258:170857345:170858187:170858298,	170857259	170857345	170857333	170857333	Nonsense_Mutation	G	A	p.R449X
STAD	TCGA-CG-5728-01	C2CD5	ENST00000544930.1,ENST00000537643.1,ENST00000396028.2,ENST00000536386.1,ENST00000545552.1,ENST00000333957.4,ENST00000542676.1,ENST00000446597.1,ENST00000540245.1,ENST00000539615.1	chr12	22623830:22623845:22624332:22624422:22624900:22624999,	22624333	22624422	22624384	22624384	Nonsense_Mutation	G	T	p.C769X
STAD	TCGA-CG-4437-01	DNMT3L	ENST00000418993.1,ENST00000270172.3	chr21	45679519:45679594:45680677:45680722:45681036:45681149,	45680678	45680722	45680690	45680690	Nonsense_Mutation	G	A	p.R47X
STAD	TCGA-CG-4437-01	CNBP	ENST00000500450.2	chr3	128890288:128890381:128890497:128890614:128902618:128902707,128890288:128890351:128890497:128890614:128902618:128902707,	128890498	128890614	128890519	128890519	Nonsense_Mutation	C	A	p.G28X
STAD	TCGA-CG-4437-01	CNBP	ENST00000504813.1	chr3	128890288:128890381:128890476:128890614:128902618:128902707,128890288:128890351:128890476:128890614:128902618:128902707,	128890477	128890614	128890519	128890519	Nonsense_Mutation	C	A	p.G28X
STAD	TCGA-CG-4437-01	CNBP	ENST00000512338.1	chr3	128890288:128890381:128890494:128890614:128902618:128902707,	128890495	128890614	128890519	128890519	Nonsense_Mutation	C	A	p.G28X
STAD	TCGA-CG-4437-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648626	85648626	Nonsense_Mutation	G	A	p.R567X
STAD	TCGA-CG-4437-01	TAF1D	ENST00000526015.1,ENST00000527068.1,ENST00000323981.2	chr11	93467790:93467826:93469306:93469470:93469859:93469907,	93469307	93469470	93469380	93469380	Nonsense_Mutation	T	A	p.K262X
STAD	TCGA-BR-8372-01	MRPL2	ENST00000388752.3	chr6	43021972:43022224:43023634:43023745:43023818:43023934,43023282:43023356:43023634:43023745:43023818:43023934,	43023635	43023745	43023644	43023644	Nonsense_Mutation	G	A	p.R208X
STAD	TCGA-BR-8372-01	TSEN34	ENST00000396383.1,ENST00000396388.2,ENST00000302937.4,ENST00000429671.2,ENST00000496583.1	chr19	54695571:54695815:54695966:54696224:54697029:54697173,	54695967	54696224	54696167	54696167	Nonsense_Mutation	C	T	p.R230X
STAD	TCGA-BR-8372-01	SULT2A1	ENST00000222002.3	chr19	48382292:48382387:48385340:48385467:48386833:48387042,	48385341	48385467	48385411	48385411	Nonsense_Mutation	C	T	p.W134X
STAD	TCGA-BR-8368-01	CDH6	ENST00000514738.1,ENST00000508132.1,ENST00000265071.2	chr5	31294305:31294363:31297395:31297515:31299570:31299738,	31297396	31297515	31297469	31297469	Nonsense_Mutation	C	A	p.Y199X
STAD	TCGA-BR-8368-01	AMMECR1	ENST00000372057.1	chrX	109459745:109459860:109507716:109507827:109560826:109560984,	109507717	109507827	109507781	109507781	Nonsense_Mutation	C	A	p.G174X
STAD	TCGA-BR-8368-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236195700:236195952:236201403:236201553:236205209:236205592,	236201404	236201553	236201453	236201453	Nonsense_Mutation	G	T	p.C412X
STAD	TCGA-BR-8368-01	CDK20	ENST00000325303.8	chr9	90584710:90584834:90585482:90585545:90585690:90585812,	90585483	90585545	90585538	90585538	Nonsense_Mutation	G	A	p.R170X
STAD	TCGA-BR-8368-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835591	82835591	Nonsense_Mutation	G	T	p.G2257X
STAD	TCGA-BR-8368-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67303002	67303002	Nonsense_Mutation	G	A	p.R218X
STAD	TCGA-BR-8368-01	SLC22A23	ENST00000380302.4,ENST00000467177.1,ENST00000406686.3,ENST00000485307.1,ENST00000436008.2,ENST00000490273.1	chr6	3298324:3298452:3324067:3324236:3410421:3410576,	3324068	3324236	3324124	3324124	Nonsense_Mutation	C	T	p.W342X
STAD	TCGA-D7-A4YX-01	NTNG1	ENST00000370067.1,ENST00000370074.4,ENST00000370070.2,ENST00000370071.2,ENST00000370065.1,ENST00000370068.1,ENST00000294649.4,ENST00000542803.1,ENST00000370061.3,ENST00000370073.2,ENST00000370066.1,ENST00000370072.3	chr1	107691215:107691461:107866903:107867544:107937775:107937948,	107866904	107867544	107867165	107867165	Nonsense_Mutation	C	T	p.R170X
STAD	TCGA-HU-A4H8-01	ICAM1	ENST00000423829.2,ENST00000264832.3	chr19	10395078:10395333:10395458:10395704:10395790:10396259,	10395459	10395704	10395521	10395521	Nonsense_Mutation	C	T	p.Q415X
STAD	TCGA-HU-A4H8-01	ASCC2	ENST00000495967.1	chr22	30218340:30218453:30221075:30221246:30234166:30234217,	30221076	30221246	30221196	30221196	Nonsense_Mutation	A	C	p.Y97X
STAD	TCGA-HU-A4H8-01	TTI2	ENST00000360742.5,ENST00000431156.2	chr8	33364746:33364839:33367263:33367450:33369484:33370230,	33367264	33367450	33367395	33367395	Nonsense_Mutation	G	A	p.Q235X
STAD	TCGA-HU-A4H8-01	FOXM1	ENST00000545049.1,ENST00000361953.3,ENST00000342628.2,ENST00000359843.3,ENST00000537018.1	chr12	2977728:2977920:2981261:2981413:2983142:2983303,	2981262	2981413	2981273	2981273	Nonsense_Mutation	G	A	p.R215X
STAD	TCGA-HU-A4H8-01	ACOT8	ENST00000487205.1	chr20	44470403:44470595:44472901:44473059:44477088:44477314,	44472902	44473059	44472920	44472920	Nonsense_Mutation	G	A	p.R210X
STAD	TCGA-HU-A4H8-01	PELI3	ENST00000349459.6	chr11	66235598:66235751:66238712:66238842:66239839:66239941,	66238713	66238842	66238753	66238753	Nonsense_Mutation	C	T	p.R89X
STAD	TCGA-HU-A4H8-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42002888:42003547:42005348:42005694:42019377:42019604,	42005349	42005694	42005391	42005391	Nonsense_Mutation	C	T	p.R1043X
STAD	TCGA-HU-A4H8-01	FCHSD2	ENST00000311172.7,ENST00000409853.1,ENST00000409418.4	chr11	72598514:72598619:72600873:72600990:72613587:72613683,	72600874	72600990	72600987	72600987	Nonsense_Mutation	G	A	p.R310X
STAD	TCGA-CD-5800-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833434	25833434	Nonsense_Mutation	C	G	p.S308X
STAD	TCGA-CD-5800-01	OXSM	ENST00000448177.1	chr3	25832653:25832806:25833260:25833488:25835582:25836014,	25833261	25833488	25833434	25833434	Nonsense_Mutation	C	G	p.S308X
STAD	TCGA-BR-8690-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103297354:103297566:103297740:103298009:103298587:103298845,	103297741	103298009	103297970	103297970	Nonsense_Mutation	A	C	p.L1752X
STAD	TCGA-FP-A4BF-01	DSN1	ENST00000438549.1	chr20	35396371:35396445:35399275:35399427:35402064:35402123,	35399276	35399427	35399407	35399407	Nonsense_Mutation	G	T	p.S75X
STAD	TCGA-FP-A4BF-01	DSN1	ENST00000373750.4,ENST00000447406.1,ENST00000426836.1,ENST00000373745.3	chr20	35396371:35396445:35399275:35399596:35402064:35402123,35396371:35396445:35399275:35399596:35399827:35399876,	35399276	35399596	35399407	35399407	Nonsense_Mutation	G	T	p.S75X
STAD	TCGA-FP-A4BF-01	DSN1	ENST00000480153.1	chr20	35396371:35396445:35399275:35399876:35402064:35402123,	35399276	35399876	35399407	35399407	Nonsense_Mutation	G	T	p.S75X
STAD	TCGA-BR-8363-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274836	114274836	Nonsense_Mutation	C	T	p.Q1688X
STAD	TCGA-BR-8363-01	TSPAN13	ENST00000466195.1,ENST00000262067.4	chr7	16816702:16816747:16817422:16817536:16818627:16818701,	16817423	16817536	16817465	16817465	Nonsense_Mutation	C	T	p.R119X
STAD	TCGA-BR-8363-01	PNPLA4	ENST00000381042.4,ENST00000537427.1,ENST00000444736.1	chrX	7866803:7868858:7870029:7870182:7880068:7880134,	7870030	7870182	7870101	7870101	Nonsense_Mutation	G	A	p.R187X
STAD	TCGA-BR-8363-01	BRAP	ENST00000327551.6	chr12	112119440:112119639:112120949:112121111:112123391:112123524,	112120950	112121111	112120995	112120995	Nonsense_Mutation	G	A	p.R67X
STAD	TCGA-BR-8363-01	ECT2	ENST00000441497.2,ENST00000437296.1,ENST00000540509.1,ENST00000392692.3,ENST00000417960.1,ENST00000232458.5,ENST00000427830.1	chr3	172523520:172523659:172525559:172525714:172533393:172533501,	172525560	172525714	172525679	172525679	Nonsense_Mutation	C	T	p.R789X
STAD	TCGA-BR-8363-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123845448	123845448	Nonsense_Mutation	C	T	p.Q1145X
STAD	TCGA-BR-8363-01	EIF2B5	ENST00000491144.1	chr3	183857867:183857945:183858205:183858518:183859712:183859831,183857936:183858009:183858205:183858518:183859712:183859831,	183858206	183858518	183858392	183858392	Nonsense_Mutation	C	T	p.R344X
STAD	TCGA-BR-8363-01	EIF2B5	ENST00000479833.1	chr3	183857867:183857945:183858205:183858403:183859712:183859831,	183858206	183858403	183858392	183858392	Nonsense_Mutation	C	T	p.R344X
STAD	TCGA-BR-8363-01	HDLBP	ENST00000427487.1	chr2	242179225:242179235:242179315:242179579:242181874:242181955,	242179316	242179579	242179357	242179357	Nonsense_Mutation	G	A	p.R784X
STAD	TCGA-BR-8363-01	HDLBP	ENST00000373292.4,ENST00000479169.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000459788.1,ENST00000310931.4	chr2	242179225:242179235:242179315:242179537:242181874:242181955,	242179316	242179537	242179357	242179357	Nonsense_Mutation	G	A	p.R784X
STAD	TCGA-BR-8363-01	ARPC2	ENST00000465395.1,ENST00000295685.10,ENST00000414983.1,ENST00000315717.5	chr2	219093525:219093573:219099074:219099120:219103386:219103446,	219099075	219099120	219099093	219099093	Nonsense_Mutation	G	T	p.E81X
STAD	TCGA-BR-8363-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57125043:57125180:57126538:57126754:57128574:57128689,	57126539	57126754	57126658	57126658	Nonsense_Mutation	G	A	p.R471X
STAD	TCGA-BR-8363-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000585505.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41342625:41342793:41343388:41343598:41345110:41345270,	41343389	41343598	41343441	41343441	Nonsense_Mutation	C	T	p.R306X
STAD	TCGA-BR-A4CS-01	ENKUR	ENST00000331161.4,ENST00000496261.2	chr10	25273138:25273305:25273664:25273834:25279391:25279538,	25273665	25273834	25273693	25273693	Nonsense_Mutation	T	A	p.K246X
STAD	TCGA-BR-A4CS-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58132546:58132720:58133932:58134091:58134375:58134579,	58133933	58134091	58134046	58134046	Nonsense_Mutation	C	T	p.R1979X
STAD	TCGA-BR-A4CS-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131388518:131388608:131404718:131404802:131415385:131415460,	131404719	131404802	131404727	131404727	Nonsense_Mutation	G	A	p.R195X
STAD	TCGA-BR-7851-01	TNS4	ENST00000254051.6	chr17	38643287:38643712:38644797:38645221:38652238:38652772,	38644798	38645221	38645087	38645087	Nonsense_Mutation	G	A	p.R192X
STAD	TCGA-BR-7851-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000376080.1,ENST00000337006.4,ENST00000491784.1,ENST00000376081.4,ENST00000376083.3	chr9	88284399:88284493:88287464:88287596:88292350:88292497,	88287465	88287596	88287483	88287483	Nonsense_Mutation	G	A	p.R184X
STAD	TCGA-BR-7851-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16022736:16022799:16024365:16024583:16029395:16029520,	16024366	16024583	16024504	16024504	Nonsense_Mutation	G	A	p.R572X
STAD	TCGA-BR-7851-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203383544:203383775:203384809:203384924:203395516:203395677,	203384810	203384924	203384850	203384850	Nonsense_Mutation	G	A	p.W298X
STAD	TCGA-BR-7851-01	IRF2	ENST00000512020.1	chr4	185340622:185340722:185350131:185350224:185395532:185395702,	185350132	185350224	185350182	185350182	Nonsense_Mutation	C	A	p.E13X
STAD	TCGA-BR-7851-01	AP1B1	ENST00000415447.1,ENST00000317368.7,ENST00000356015.2,ENST00000432560.2,ENST00000405198.1,ENST00000357586.2,ENST00000421126.1,ENST00000402502.1	chr22	29750638:29750860:29752414:29752605:29754714:29754960,	29752415	29752605	29752476	29752476	Nonsense_Mutation	G	A	p.Q219X
STAD	TCGA-BR-7851-01	PKNOX2	ENST00000526955.1	chr11	125267769:125267958:125279934:125281761:125298907:125298984,	125279935	125281761	125281699	125281699	Nonsense_Mutation	C	T	p.R292X
STAD	TCGA-BR-7851-01	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720468	3720468	Nonsense_Mutation	G	A	p.R1285X
STAD	TCGA-BR-7851-01	MFGE8	ENST00000558029.1,ENST00000566497.1,ENST00000268151.7,ENST00000268150.8	chr15	89450425:89450607:89453022:89453154:89456477:89456490,	89453023	89453154	89453092	89453092	Nonsense_Mutation	G	A	p.R46X
STAD	TCGA-BR-7851-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375897.3,ENST00000375888.1	chr10	27497174:27497374:27499742:27500010:27504463:27504570,	27499743	27500010	27499857	27499857	Nonsense_Mutation	C	A	p.G364X
STAD	TCGA-BR-7851-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101099	27101099	Nonsense_Mutation	C	T	p.R1461X
STAD	TCGA-CD-A4MI-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15884764:15884894:15889212:15889362:15893470:15893542,	15889213	15889362	15889305	15889305	Nonsense_Mutation	C	A	p.G131X
STAD	TCGA-CD-A4MI-01	APPL2	ENST00000547809.1,ENST00000549974.1,ENST00000549573.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000550648.1,ENST00000258530.3	chr12	105597480:105597563:105600838:105600985:105601748:105601767,	105600839	105600985	105600917	105600917	Nonsense_Mutation	G	T	p.Y187X
STAD	TCGA-CD-A4MI-01	TMEM208	ENST00000562235.1	chr16	67262257:67262317:67262397:67262560:67262699:67262739,	67262398	67262560	67262461	67262461	Nonsense_Mutation	C	T	p.R76X
STAD	TCGA-CD-A4MI-01	TMEM208	ENST00000565201.1,ENST00000563953.1,ENST00000304800.9	chr16	67262257:67262317:67262397:67262534:67262699:67262739,	67262398	67262534	67262461	67262461	Nonsense_Mutation	C	T	p.R76X
STAD	TCGA-CD-A4MI-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155736194	155736194	Nonsense_Mutation	G	A	p.R1024X
STAD	TCGA-CD-A4MI-01	ABCB4	ENST00000265723.4	chr7	87032450:87032597:87035603:87035831:87037352:87037550,	87035604	87035831	87035769	87035769	Nonsense_Mutation	C	T	p.W1114X
STAD	TCGA-CD-A4MI-01	ABCB4	ENST00000545634.1,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87032450:87032597:87035603:87035810:87037352:87037550,	87035604	87035810	87035769	87035769	Nonsense_Mutation	C	T	p.W1114X
STAD	TCGA-CD-A4MI-01	L3MBTL2	ENST00000479978.1,ENST00000452106.1,ENST00000216237.5,ENST00000466589.1	chr22	41623807:41623873:41625543:41625660:41626142:41626658,	41625544	41625660	41625570	41625570	Nonsense_Mutation	C	T	p.R639X
STAD	TCGA-CD-A4MI-01	ABCA3	ENST00000382381.3,ENST00000301732.5,ENST00000566200.1	chr16	2328295:2328459:2328943:2329131:2331027:2331222,	2328944	2329131	2329104	2329104	Nonsense_Mutation	G	A	p.Q1463X
STAD	TCGA-CD-A4MI-01	PREX2	ENST00000288368.4	chr8	69058443:69058587:69069556:69069671:69103956:69104023,	69069557	69069671	69069574	69069574	Nonsense_Mutation	G	T	p.G1417X
STAD	TCGA-CG-4306-01	MYO5B	ENST00000285039.7,ENST00000587895.1,ENST00000592779.1,ENST00000324581.6	chr18	47389631:47389697:47390510:47390750:47398536:47398602,	47390511	47390750	47390531	47390531	Nonsense_Mutation	G	A	p.R1275X
STAD	TCGA-CG-4306-01	PCCB	ENST00000471595.1	chr3	136047599:136047699:136048746:136048826:136052243:136056737,	136048747	136048826	136048788	136048788	Nonsense_Mutation	C	T	p.R534X
STAD	TCGA-CG-4306-01	CDC40	ENST00000368930.1,ENST00000368932.1,ENST00000307731.1,ENST00000606893.1	chr6	110536488:110536534:110538904:110539006:110540566:110540682,	110538905	110539006	110538952	110538952	Nonsense_Mutation	C	T	p.Q346X
STAD	TCGA-CG-4306-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000380554.3	chr10	5141518:5141641:5144292:5144402:5144676:5144842,	5144293	5144402	5144398	5144398	Nonsense_Mutation	C	T	p.R226X
STAD	TCGA-CG-4306-01	MIPOL1	ENST00000539062.2,ENST00000556451.1,ENST00000327441.7,ENST00000536774.1,ENST00000396294.2,ENST00000545536.1,ENST00000537471.1	chr14	37777662:37777724:37838721:37838829:37892059:37892154,	37838722	37838829	37838737	37838737	Nonsense_Mutation	C	T	p.Q282X
STAD	TCGA-CG-4306-01	MAG	ENST00000537831.2,ENST00000361922.4,ENST00000392213.3,ENST00000593348.1	chr19	35800776:35801064:35801449:35801546:35802820:35802912,	35801450	35801546	35801452	35801452	Nonsense_Mutation	C	T	p.R508X
STAD	TCGA-CG-4306-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220501023:220501172:220501401:220501596:220502302:220502517,	220501402	220501596	220501408	220501408	Nonsense_Mutation	C	T	p.R810X
STAD	TCGA-CG-4306-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961140	39961140	Nonsense_Mutation	C	T	p.R552X
STAD	TCGA-HU-A4GP-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541092	187541092	Nonsense_Mutation	G	T	p.Y2216X
STAD	TCGA-HU-A4GP-01	ATG10	ENST00000458350.3,ENST00000282185.3,ENST00000513634.1	chr5	81460263:81460356:81474308:81474406:81548380:81548478,	81474309	81474406	81474361	81474361	Nonsense_Mutation	T	A	p.Y136X
STAD	TCGA-HU-A4G9-01	PUM2	ENST00000319801.5,ENST00000440577.1	chr2	20460097:20460227:20462953:20463221:20478343:20478580,20460097:20460227:20462953:20463221:20482707:20482992,	20462954	20463221	20463159	20463159	Nonsense_Mutation	G	A	p.R674X
STAD	TCGA-HU-A4G9-01	DPYS	ENST00000351513.2	chr8	105393411:105393542:105405011:105405219:105430943:105431082,105393411:105393542:105405011:105405219:105423976:105424043,105393411:105393542:105405011:105405219:105436474:105436617,	105405012	105405219	105405032	105405032	Nonsense_Mutation	G	A	p.R475X
STAD	TCGA-HU-A4G9-01	LAMA5	ENST00000252999.3,ENST00000370691.2	chr20	60885957:60886150:60886217:60886363:60886456:60886592,	60886218	60886363	60886294	60886294	Nonsense_Mutation	G	A	p.R3338X
STAD	TCGA-HU-A4G9-01	PRKACB	ENST00000470673.1,ENST00000432111.1,ENST00000394838.2,ENST00000446538.1,ENST00000370685.3,ENST00000370680.1,ENST00000370689.2,ENST00000450730.1,ENST00000370684.1,ENST00000370688.3,ENST00000413538.1,ENST00000417530.1,ENST00000436133.1,ENST00000370682.3	chr1	84647882:84648011:84649719:84649818:84650782:84650865,	84649720	84649818	84649798	84649798	Nonsense_Mutation	C	T	p.R153X
STAD	TCGA-HU-A4G9-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75684582:75685156:75687020:75687204:75688598:75688837,	75687021	75687204	75687179	75687179	Nonsense_Mutation	G	A	p.R707X
STAD	TCGA-HU-8602-01	RERE	ENST00000337907.3,ENST00000377464.1,ENST00000400907.2,ENST00000400908.2	chr1	8425939:8426034:8482786:8482867:8525984:8526083,	8482787	8482867	8482843	8482843	Nonsense_Mutation	G	A	p.Q410X
STAD	TCGA-HU-8602-01	SHROOM3	ENST00000296043.6	chr4	77675463:77676345:77677601:77678090:77680697:77680848,	77677602	77678090	77678005	77678005	Nonsense_Mutation	C	T	p.R1705X
STAD	TCGA-HU-8602-01	NPTN	ENST00000563691.1,ENST00000287226.8,ENST00000545878.1	chr15	73884348:73884478:73889362:73889710:73925465:73925562,	73889363	73889710	73889393	73889393	Nonsense_Mutation	G	A	p.R137X
STAD	TCGA-HU-8602-01	SH3RF2	ENST00000511705.1	chr5	145435543:145435776:145439428:145439787:145441988:145442297,145435543:145435794:145439428:145439787:145441988:145442297,	145439429	145439787	145439648	145439648	Nonsense_Mutation	G	A	p.W592X
STAD	TCGA-HU-8602-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101881	168101881	Nonsense_Mutation	C	T	p.R1327X
STAD	TCGA-HU-8602-01	ENOX1	ENST00000261488.6,ENST00000540032.1,ENST00000412891.1	chr13	43896519:43896637:43900554:43900661:43918673:43918886,	43900555	43900661	43900656	43900656	Nonsense_Mutation	G	A	p.Q348X
STAD	TCGA-HU-8602-01	UPB1	ENST00000382760.2,ENST00000326010.5	chr22	24891209:24891475:24896074:24896246:24898093:24898181,	24896075	24896246	24896163	24896163	Nonsense_Mutation	C	T	p.Q65X
STAD	TCGA-HU-8602-01	UPK1A	ENST00000222275.2	chr19	36164372:36164447:36166741:36166921:36168713:36168759,	36166742	36166921	36166831	36166831	Nonsense_Mutation	G	A	p.W186X
STAD	TCGA-HU-8602-01	WDR33	ENST00000436787.1,ENST00000322313.4	chr2	128484225:128484351:128520635:128520733:128522401:128522553,	128520636	128520733	128520648	128520648	Nonsense_Mutation	T	A	p.R238X
STAD	TCGA-HU-8602-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75673953:75674046:75676604:75676778:75681992:75682162,	75676605	75676778	75676745	75676745	Nonsense_Mutation	G	A	p.Q1019X
STAD	TCGA-HU-8602-01	IFI16	ENST00000483916.1	chr1	159015086:159015254:159021468:159023514:159024610:159024914,159019221:159019389:159021468:159023514:159024610:159024914,	159021469	159023514	159021772	159021772	Nonsense_Mutation	C	T	p.R601X
STAD	TCGA-HU-8602-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000368132.3,ENST00000295809.7	chr1	159019221:159019389:159021468:159021888:159023322:159023514,	159021469	159021888	159021772	159021772	Nonsense_Mutation	C	T	p.R601X
STAD	TCGA-HU-8602-01	USP47	ENST00000399455.2,ENST00000539466.1,ENST00000527733.1,ENST00000339865.5	chr11	11952242:11952298:11954550:11954663:11955377:11955482,	11954551	11954663	11954637	11954637	Nonsense_Mutation	C	T	p.R512X
STAD	TCGA-HU-8602-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15977964	15977964	Nonsense_Mutation	G	A	p.R43X
STAD	TCGA-HU-8602-01	FOPNL	ENST00000575938.1	chr16	15973660:15973745:15977864:15977981:15982414:15982450,	15977865	15977981	15977964	15977964	Nonsense_Mutation	G	A	p.R43X
STAD	TCGA-HU-8602-01	ACOT11	ENST00000371316.3,ENST00000343744.2,ENST00000481208.1	chr1	55062936:55063088:55064968:55065088:55066941:55067086,	55064969	55065088	55065021	55065021	Nonsense_Mutation	C	T	p.R273X
STAD	TCGA-HU-8602-01	GFRA3	ENST00000378362.3,ENST00000274721.3	chr5	137588975:137589064:137589454:137589589:137589745:137589849,	137589455	137589589	137589531	137589531	Nonsense_Mutation	G	T	p.C316X
STAD	TCGA-HU-8602-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21395842:21396017:21396270:21396428:21401205:21401318,	21396271	21396428	21396422	21396422	Nonsense_Mutation	G	A	p.R283X
STAD	TCGA-BR-6564-01	SPDEF	ENST00000544425.1	chr6	34507291:34507339:34508760:34508958:34511796:34511939,34507026:34507173:34508760:34508958:34511796:34512261,	34508761	34508958	34508912	34508912	Nonsense_Mutation	C	T	p.W161X
STAD	TCGA-BR-8382-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33330813	33330813	Nonsense_Mutation	G	A	p.Q1083X
STAD	TCGA-BR-8382-01	DDX31	ENST00000372159.3,ENST00000438527.3	chr9	135487473:135487642:135493716:135493828:135501050:135501132,	135493717	135493828	135493777	135493777	Nonsense_Mutation	G	A	p.Q694X
STAD	TCGA-BR-8382-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171809039:171809131:171821566:171821643:171833280:171833356,	171821567	171821643	171821626	171821626	Nonsense_Mutation	G	A	p.R84X
STAD	TCGA-BR-8382-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000263960.2	chr2	198318216:198318388:198327262:198327455:198334793:198334895,198324655:198324805:198327262:198327455:198334793:198334895,	198327263	198327455	198327368	198327368	Nonsense_Mutation	T	G	p.Y120X
STAD	TCGA-BR-8382-01	CHRNA3	ENST00000559658.1	chr15	78886271:78886353:78888881:78889074:78893594:78894606,	78888882	78889074	78888987	78888987	Nonsense_Mutation	C	A	p.G493X
STAD	TCGA-BR-8382-01	SAMD4A	ENST00000392067.3,ENST00000357634.3,ENST00000554335.1	chr14	55168779:55169298:55203741:55204005:55215532:55215642,	55203742	55204005	55203855	55203855	Nonsense_Mutation	C	T	p.R277X
STAD	TCGA-BR-8382-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33331122	33331122	Nonsense_Mutation	G	A	p.Q980X
STAD	TCGA-BR-8382-01	HNRNPH1	ENST00000519958.1	chr5	179045045:179045061:179045145:179045324:179047892:179047960,179044817:179044912:179045145:179045324:179047892:179047960,	179045146	179045324	179045188	179045188	Nonsense_Mutation	C	A	p.G225X
STAD	TCGA-BR-4361-01	APOBEC3D	ENST00000381568.4,ENST00000216099.8	chr22	39418826:39419019:39421074:39421354:39421561:39421676,	39421075	39421354	39421135	39421135	Nonsense_Mutation	C	T	p.R91X
STAD	TCGA-BR-4361-01	PRPF4B	ENST00000494674.1	chr6	4058961:4059048:4060646:4060920:4061248:4061381,	4060647	4060920	4060797	4060797	Nonsense_Mutation	C	T	p.R991X
STAD	TCGA-BR-4361-01	PRPF4B	ENST00000481109.1	chr6	4058961:4059048:4060646:4060878:4061248:4061381,	4060647	4060878	4060797	4060797	Nonsense_Mutation	C	T	p.R991X
STAD	TCGA-BR-4361-01	MSH3	ENST00000265081.6	chr5	80071512:80071577:80074538:80074655:80083383:80083491,	80074539	80074655	80074641	80074641	Nonsense_Mutation	G	A	p.W807X
STAD	TCGA-BR-4361-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131388518:131388608:131404718:131404802:131415385:131415460,	131404719	131404802	131404727	131404727	Nonsense_Mutation	G	A	p.R195X
STAD	TCGA-BR-4361-01	CCNB1IP1	ENST00000557665.1,ENST00000358932.4,ENST00000353689.4,ENST00000398160.2	chr14	20781795:20781960:20784385:20784719:20793697:20793812,	20784386	20784719	20784646	20784646	Nonsense_Mutation	G	A	p.R13X
STAD	TCGA-BR-4361-01	MYRIP	ENST00000482033.1,ENST00000458292.1,ENST00000302541.6,ENST00000539167.1,ENST00000425621.1,ENST00000459828.1,ENST00000444716.1	chr3	40192538:40192675:40204220:40204301:40208336:40208434,	40204221	40204301	40204292	40204292	Nonsense_Mutation	C	T	p.Q181X
STAD	TCGA-BR-4361-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17700169	17700169	Nonsense_Mutation	A	T	p.K1303X
STAD	TCGA-BR-4361-01	ISM2	ENST00000393684.3,ENST00000429906.1,ENST00000342219.4,ENST00000216481.6	chr14	77944917:77945058:77948664:77949010:77950665:77950908,	77948665	77949010	77948915	77948915	Nonsense_Mutation	C	T	p.W241X
STAD	TCGA-BR-4361-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277794	114277794	Nonsense_Mutation	A	T	p.K2674X
STAD	TCGA-BR-4361-01	GPATCH2L	ENST00000312858.5,ENST00000554125.1,ENST00000261530.7	chr14	76618278:76618334:76620696:76621368:76633005:76633070,	76620697	76621368	76620992	76620992	Nonsense_Mutation	C	T	p.R96X
STAD	TCGA-BR-4361-01	JPH3	ENST00000537256.1,ENST00000284262.2,ENST00000563609.1	chr16	87717747:87717872:87723251:87724132:87730185:87730408,	87723252	87724132	87723329	87723329	Nonsense_Mutation	C	T	p.Q455X
STAD	TCGA-BR-4361-01	DOCK7	ENST00000340370.5,ENST00000251157.5,ENST00000454575.1	chr1	62979141:62979277:62979386:62979569:62993821:62993976,	62979387	62979569	62979473	62979473	Nonsense_Mutation	G	A	p.Q1345X
STAD	TCGA-BR-4361-01	SIK2	ENST00000304987.3	chr11	111491062:111491126:111558724:111558886:111571609:111571734,	111558725	111558886	111558769	111558769	Nonsense_Mutation	C	T	p.R121X
STAD	TCGA-BR-4361-01	GFM2	ENST00000296805.3,ENST00000509430.1,ENST00000345239.2	chr5	74021765:74021951:74026084:74026223:74026426:74026600,74021765:74021951:74026084:74026223:74028846:74028923,	74026085	74026223	74026118	74026118	Nonsense_Mutation	G	A	p.R565X
STAD	TCGA-BR-4361-01	ALS2	ENST00000439495.1,ENST00000482891.1,ENST00000264276.6,ENST00000457679.2	chr2	202603392:202603458:202606396:202606577:202608980:202609111,	202606397	202606577	202606542	202606542	Nonsense_Mutation	G	A	p.Q736X
STAD	TCGA-BR-6801-01	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005450	47005450	Nonsense_Mutation	G	C	p.S58X
STAD	TCGA-BR-6801-01	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005450	47005450	Nonsense_Mutation	G	C	p.S58X
STAD	TCGA-BR-A4J2-01	ARID4A	ENST00000395168.3,ENST00000445108.1,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58790202:58790335:58794954:58795034:58796245:58796322,	58794955	58795034	58795012	58795012	Nonsense_Mutation	C	T	p.R214X
STAD	TCGA-BR-8369-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24903114:24903218:24904960:24905084:24905688:24905856,	24904961	24905084	24905012	24905012	Nonsense_Mutation	G	A	p.R208X
STAD	TCGA-BR-8369-01	LDB2	ENST00000508918.1,ENST00000503178.2,ENST00000512345.1,ENST00000503153.1,ENST00000503829.1,ENST00000506732.1,ENST00000504886.1,ENST00000502640.1,ENST00000441778.2,ENST00000507464.1,ENST00000304523.5,ENST00000515064.1	chr4	16587598:16587628:16590332:16590455:16597325:16597498,	16590333	16590455	16590368	16590368	Nonsense_Mutation	G	A	p.R166X
STAD	TCGA-CG-4476-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82923943:82924546:82925792:82925967:82927676:82927854,	82925793	82925967	82925890	82925890	Nonsense_Mutation	G	A	p.R502X
STAD	TCGA-CG-4476-01	MTMR11	ENST00000369140.3,ENST00000439741.2	chr1	149902683:149902857:149903151:149903318:149903835:149903906,	149903152	149903318	149903217	149903217	Nonsense_Mutation	G	A	p.R409X
STAD	TCGA-BR-7717-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217559	26217559	Nonsense_Mutation	C	T	p.R78X
STAD	TCGA-HU-A4GD-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285091	217285091	Nonsense_Mutation	C	A	p.S311X
STAD	TCGA-IN-7808-01	IGSF8	ENST00000314485.7,ENST00000368086.1	chr1	160062361:160062485:160062713:160063121:160063499:160063961,	160062714	160063121	160062789	160062789	Nonsense_Mutation	G	A	p.R413X
STAD	TCGA-IN-7808-01	CWF19L1	ENST00000370379.1	chr10	101996606:101996726:101997778:101997988:102003454:102003529,101995423:101995521:101997778:101997988:102003454:102003529,	101997779	101997988	101997883	101997883	Nonsense_Mutation	C	A	p.E384X
STAD	TCGA-IN-7808-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450893	55450893	Nonsense_Mutation	G	A	p.R432X
STAD	TCGA-BR-8284-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1160X
STAD	TCGA-BR-8284-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233X
STAD	TCGA-D7-6519-01	PIWIL1	ENST00000245255.3	chr12	130840097:130840212:130841462:130841650:130842025:130842098,	130841463	130841650	130841471	130841471	Nonsense_Mutation	C	A	p.Y471X
STAD	TCGA-HU-8604-01	RXFP2	ENST00000380314.1,ENST00000298386.2	chr13	32363258:32363330:32365942:32366172:32366814:32367225,	32365943	32366172	32365959	32365959	Nonsense_Mutation	C	T	p.R388X
STAD	TCGA-CG-4469-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99969331	99969331	Nonsense_Mutation	T	A	p.L487X
STAD	TCGA-CG-4469-01	DGKA	ENST00000548047.1,ENST00000551585.1,ENST00000551739.1,ENST00000557180.1,ENST00000551296.1,ENST00000549079.2,ENST00000402956.3,ENST00000553084.1,ENST00000552478.1,ENST00000331886.5,ENST00000555218.1,ENST00000394147.1,ENST00000551156.1	chr12	56335068:56335109:56335293:56335368:56335781:56335821,	56335294	56335368	56335328	56335328	Nonsense_Mutation	C	T	p.R404X
STAD	TCGA-CG-4469-01	ZNF302	ENST00000505163.1,ENST00000446502.2,ENST00000423823.2,ENST00000509196.1,ENST00000457781.2,ENST00000505242.1	chr19	35173681:35173802:35174059:35174143:35175156:35175369,	35174060	35174143	35174131	35174131	Nonsense_Mutation	A	T	p.K68X
STAD	TCGA-CG-4469-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
STAD	TCGA-BR-8360-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805494	125805494	Nonsense_Mutation	G	A	p.R79X
STAD	TCGA-BR-8360-01	RNF10	ENST00000540046.1,ENST00000545419.1,ENST00000546262.1,ENST00000413266.2,ENST00000325954.4,ENST00000535395.1	chr12	121001618:121001746:121002874:121002992:121003230:121003330,	121002875	121002992	121002881	121002881	Nonsense_Mutation	C	T	p.R558X
STAD	TCGA-BR-8360-01	IGFL4	ENST00000601672.1	chr19	46543580:46543674:46543775:46543826:46544309:46544368,	46543776	46543826	46543796	46543796	Nonsense_Mutation	G	C	p.S17X
STAD	TCGA-BR-4369-01	KLHDC8B	ENST00000332780.2	chr3	49212365:49212399:49212494:49212596:49213037:49213835,	49212495	49212596	49212502	49212502	Nonsense_Mutation	G	A	p.W258X
STAD	TCGA-BR-4369-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301024	179301024	Nonsense_Mutation	A	T	p.L211X
STAD	TCGA-BR-4369-01	ACSM2B	ENST00000565232.1,ENST00000329697.6,ENST00000569364.1,ENST00000567288.1,ENST00000563943.1,ENST00000565322.1,ENST00000567001.1	chr16	20557721:20557796:20559383:20559507:20559715:20559795,	20559384	20559507	20559473	20559473	Nonsense_Mutation	C	A	p.G337X
STAD	TCGA-BR-8676-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832059	24832059	Nonsense_Mutation	C	A	p.S1287X
STAD	TCGA-B7-5816-01	ZFYVE16	ENST00000338008.5,ENST00000512558.1,ENST00000505560.1,ENST00000510158.1	chr5	79732574:79734826:79735754:79735851:79738941:79739103,	79735755	79735851	79735832	79735832	Nonsense_Mutation	C	A	p.C800X
STAD	TCGA-B7-5816-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27523069:27523222:27539918:27540042:27544611:27544708,	27539919	27540042	27539961	27539961	Nonsense_Mutation	G	A	p.Q311X
STAD	TCGA-B7-5816-01	ZNF483	ENST00000358151.4	chr9	114296018:114296145:114296540:114296633:114338644:114340124,	114296541	114296633	114296627	114296627	Nonsense_Mutation	C	T	p.R239X
STAD	TCGA-B7-5816-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499688	42499688	Nonsense_Mutation	C	A	p.G266X
STAD	TCGA-BR-4368-01	COLGALT2	ENST00000361927.4,ENST00000546159.1	chr1	183923895:183923972:183933034:183933154:183938402:183938607,	183933035	183933154	183933050	183933050	Nonsense_Mutation	G	A	p.Q313X
STAD	TCGA-BR-4368-01	CYP3A43	ENST00000415413.1,ENST00000481362.1,ENST00000417625.1,ENST00000434806.1,ENST00000354829.2,ENST00000491648.1	chr7	99459235:99459462:99461159:99461322:99463528:99463624,	99461160	99461322	99461224	99461224	Nonsense_Mutation	C	T	p.R441X
STAD	TCGA-BR-4368-01	CYP3A43	ENST00000222382.5	chr7	99459235:99459462:99461156:99461322:99463528:99463624,	99461157	99461322	99461224	99461224	Nonsense_Mutation	C	T	p.R441X
STAD	TCGA-BR-4368-01	ARSF	ENST00000537104.1,ENST00000381127.1,ENST00000359361.2	chrX	3019127:3019262:3021802:3021965:3028168:3028293,	3021803	3021965	3021856	3021856	Nonsense_Mutation	C	T	p.R386X
STAD	TCGA-BR-4368-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000436908.1,ENST00000455112.2,ENST00000448002.2	chr7	102495223:102495307:102517913:102518040:102518777:102518897,	102517914	102518040	102518012	102518012	Nonsense_Mutation	G	A	p.R513X
STAD	TCGA-BR-4368-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186101459:186101541:186105799:186106069:186106629:186106800,	186105800	186106069	186106003	186106003	Nonsense_Mutation	G	T	p.E4506X
STAD	TCGA-BR-4368-01	SAV1	ENST00000324679.4	chr14	51107467:51107611:51111461:51111732:51131896:51132083,	51111462	51111732	51111571	51111571	Nonsense_Mutation	G	A	p.R233X
STAD	TCGA-BR-4368-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135099160:135099330:135102500:135102635:135107375:135107509,	135102501	135102635	135102526	135102526	Nonsense_Mutation	C	T	p.R335X
STAD	TCGA-BR-4368-01	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9520869:9520937:9525373:9525487:9528422:9528675,	9525374	9525487	9525431	9525431	Nonsense_Mutation	C	T	p.R692X
STAD	TCGA-BR-4368-01	CAPN3	ENST00000349748.3	chr15	42679950:42680084:42681125:42681294:42684836:42684920,	42681126	42681294	42681202	42681202	Nonsense_Mutation	G	T	p.E237X
STAD	TCGA-BR-4368-01	RBM6	ENST00000442092.1,ENST00000421682.1,ENST00000539992.1,ENST00000419610.1,ENST00000443081.1,ENST00000422955.1,ENST00000454079.1,ENST00000266022.4,ENST00000434592.1	chr3	50103824:50103935:50106122:50106197:50107887:50107985,	50106123	50106197	50106123	50106123	Nonsense_Mutation	C	T	p.Q982X
STAD	TCGA-BR-4368-01	SMAP2	ENST00000372718.3	chr1	40839368:40839895:40872407:40872541:40874324:40874410,	40872408	40872541	40872413	40872413	Nonsense_Mutation	C	T	p.R37X
STAD	TCGA-BR-4368-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167849012:167849102:167850537:167851073:167855037:167855146,	167850538	167851073	167850695	167850695	Nonsense_Mutation	C	T	p.Q478X
STAD	TCGA-BR-4368-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436812	16436812	Nonsense_Mutation	G	T	p.Y460X
STAD	TCGA-BR-4368-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000367009.1,ENST00000391905.3,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210686496:210686532:210761241:210761443:210796869:210797014,	210761242	210761443	210761245	210761245	Nonsense_Mutation	T	G	p.Y350X
STAD	TCGA-BR-4292-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984642	123984642	Nonsense_Mutation	G	A	p.R479X
STAD	TCGA-BR-4292-01	ACSL3	ENST00000392066.3,ENST00000357430.3	chr2	223789271:223789313:223791734:223791907:223793579:223793654,	223791735	223791907	223791754	223791754	Nonsense_Mutation	C	T	p.R438X
STAD	TCGA-BR-4292-01	AADACL2	ENST00000356517.3	chr3	151451714:151451961:151458433:151458656:151461880:151461950,	151458434	151458656	151458608	151458608	Nonsense_Mutation	C	T	p.R105X
STAD	TCGA-BR-4292-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124332920:124333415:124335177:124335306:124338132:124338266,	124335178	124335306	124335285	124335285	Nonsense_Mutation	T	A	p.K1342X
STAD	TCGA-BR-4292-01	TBC1D25	ENST00000537536.1	chrX	48398185:48398308:48399720:48399830:48417284:48417412,48398185:48398308:48399720:48399830:48403256:48403411,	48399721	48399830	48399811	48399811	Nonsense_Mutation	C	T	p.R72X
STAD	TCGA-BR-4292-01	LPCAT1	ENST00000475622.1,ENST00000283415.3	chr5	1461954:1463950:1466863:1467005:1470940:1471039,	1466864	1467005	1466903	1466903	Nonsense_Mutation	G	A	p.R461X
STAD	TCGA-BR-4292-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62598228:62598357:62598733:62598876:62599182:62599305,	62598734	62598876	62598745	62598745	Nonsense_Mutation	G	A	p.R85X
STAD	TCGA-HU-A4GU-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120510055:120510244:120510699:120510855:120512133:120512367,	120510700	120510855	120510772	120510772	Nonsense_Mutation	G	A	p.Q398X
STAD	TCGA-HU-A4GU-01	ADCY3	ENST00000606682.1,ENST00000260600.5,ENST00000405392.1	chr2	25046077:25046224:25047246:25047405:25048913:25048995,	25047247	25047405	25047330	25047330	Nonsense_Mutation	G	A	p.R885X
STAD	TCGA-HU-A4GU-01	PPP3CB	ENST00000545874.1,ENST00000394829.2,ENST00000394828.2,ENST00000342558.3,ENST00000360663.5	chr10	75231225:75231371:75234676:75234788:75238256:75238381,	75234677	75234788	75234731	75234731	Nonsense_Mutation	T	A	p.R157X
STAD	TCGA-HU-A4GU-01	SNX24	ENST00000511211.1,ENST00000261369.4,ENST00000506996.1,ENST00000395451.4,ENST00000513881.1,ENST00000502387.1,ENST00000511545.1	chr5	122272428:122272512:122281749:122281854:122335606:122335679,	122281750	122281854	122281825	122281825	Nonsense_Mutation	C	T	p.R74X
STAD	TCGA-HU-A4GU-01	SP100	ENST00000264052.5,ENST00000340126.4,ENST00000409112.1	chr2	231367780:231367825:231368900:231369005:231371017:231371160,	231368901	231369005	231368993	231368993	Nonsense_Mutation	C	T	p.R620X
STAD	TCGA-HU-A4GU-01	PXMP4	ENST00000217398.3	chr20	32295294:32295775:32298360:32298579:32302479:32302542,	32298361	32298579	32298462	32298462	Nonsense_Mutation	G	A	p.Q92X
STAD	TCGA-HU-A4GU-01	PXMP4	ENST00000409299.3	chr20	32295294:32295775:32298360:32298559:32302479:32302542,	32298361	32298559	32298462	32298462	Nonsense_Mutation	G	A	p.Q92X
STAD	TCGA-HU-A4GU-01	SPRED1	ENST00000561205.1	chr15	38545381:38545418:38591573:38591748:38614441:38614610,	38591574	38591748	38591731	38591731	Nonsense_Mutation	C	T	p.R64X
STAD	TCGA-HU-A4GU-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351149	89351149	Nonsense_Mutation	G	A	p.R601X
STAD	TCGA-HU-A4GU-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951518	235951518	Nonsense_Mutation	G	A	p.W702X
STAD	TCGA-HU-A4GU-01	PIK3R1	ENST00000521381.1,ENST00000520675.1,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1	chr5	67569217:67569310:67569766:67569841:67575429:67575561,	67569767	67569841	67569823	67569823	Nonsense_Mutation	C	T	p.R162X
STAD	TCGA-HU-A4GU-01	ITGA2B	ENST00000377068.3,ENST00000592226.1,ENST00000353281.4,ENST00000262407.5	chr17	42458246:42458429:42460860:42461072:42461261:42461314,	42460861	42461072	42461008	42461008	Nonsense_Mutation	C	A	p.E355X
STAD	TCGA-HU-A4GU-01	E2F7	ENST00000322886.7,ENST00000416496.2,ENST00000550669.1	chr12	77427785:77427822:77436844:77436979:77438416:77438575,	77436845	77436979	77436971	77436971	Nonsense_Mutation	G	A	p.R333X
STAD	TCGA-D7-A4YV-01	LAD1	ENST00000367313.3,ENST00000391967.2	chr1	201350334:201351021:201351379:201351454:201351780:201351867,	201351380	201351454	201351409	201351409	Nonsense_Mutation	G	A	p.Q507X
STAD	TCGA-D7-A4YV-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288600	33288600	Nonsense_Mutation	G	A	p.R330X
STAD	TCGA-D7-A4YV-01	TPR	ENST00000367478.4	chr1	186310159:186310291:186310383:186310521:186312457:186312605,	186310384	186310521	186310500	186310500	Nonsense_Mutation	G	A	p.Q1258X
STAD	TCGA-D7-A4YV-01	TMCO6	ENST00000252100.6,ENST00000510336.1,ENST00000514449.1,ENST00000394671.3	chr5	140021249:140021365:140021454:140021638:140021899:140021998,	140021455	140021638	140021628	140021628	Nonsense_Mutation	C	G	p.S163X
STAD	TCGA-D7-A4YV-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547357	165547357	Nonsense_Mutation	C	A	p.E489X
STAD	TCGA-D7-A4YV-01	SSX2IP	ENST00000422026.1	chr1	85136328:85136498:85136859:85136991:85155836:85155972,85136328:85136498:85136859:85136991:85156053:85156127,85136328:85136498:85136859:85136991:85156356:85156440,	85136860	85136991	85136860	85136860	Nonsense_Mutation	C	A	p.E15X
STAD	TCGA-D7-A4YV-01	PATL1	ENST00000300146.9	chr11	59418226:59418286:59419016:59419114:59419936:59420060,	59419017	59419114	59419061	59419061	Nonsense_Mutation	G	A	p.R494X
STAD	TCGA-D7-A4YV-01	CPA4	ENST00000493259.1,ENST00000222482.4,ENST00000445470.2	chr7	129946626:129946737:129948146:129948237:129950626:129950826,	129948147	129948237	129948150	129948150	Nonsense_Mutation	C	T	p.R236X
STAD	TCGA-D7-A4YV-01	NOP58	ENST00000433543.2	chr2	203155847:203155993:203157499:203157626:203160396:203160560,203155847:203155993:203157499:203157626:203162101:203162236,	203157500	203157626	203157521	203157521	Nonsense_Mutation	C	T	p.R268X
STAD	TCGA-D7-A4YV-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107459935	107459935	Nonsense_Mutation	G	A	p.Q167X
STAD	TCGA-CD-A4MH-01	FPGS	ENST00000431857.1,ENST00000423577.1,ENST00000373225.3	chr9	130565210:130565341:130566563:130566692:130566777:130566831,130565602:130565683:130566563:130566692:130566777:130566831,	130566564	130566692	130566591	130566591	Nonsense_Mutation	C	T	p.Q56X
STAD	TCGA-CD-8524-01	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000431076.1	chr2	155102324:155102495:155115533:155115651:155157921:155158102,	155115534	155115651	155115621	155115621	Nonsense_Mutation	G	A	p.W315X
STAD	TCGA-CD-8524-01	TUSC3	ENST00000509380.1,ENST00000515859.1,ENST00000510836.1,ENST00000506802.1,ENST00000382020.4,ENST00000503731.1	chr8	15397791:15398077:15480588:15480758:15508205:15508323,	15480589	15480758	15480610	15480610	Nonsense_Mutation	G	T	p.E54X
STAD	TCGA-CD-8524-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
STAD	TCGA-BR-6457-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
STAD	TCGA-D7-6815-01	MBD6	ENST00000546632.1	chr12	57916624:57916794:57917811:57918199:57918502:57918525,	57917812	57918199	57918174	57918174	Nonsense_Mutation	C	T	p.R30X
STAD	TCGA-D7-6815-01	ZC3H18	ENST00000569435.1	chr16	88636885:88636974:88643517:88643783:88653007:88653092,	88643518	88643783	88643772	88643772	Nonsense_Mutation	C	T	p.Q81X
STAD	TCGA-D7-6815-01	ZC3H18	ENST00000452588.2	chr16	88636885:88636974:88643517:88644134:88653007:88653092,	88643518	88644134	88643772	88643772	Nonsense_Mutation	C	T	p.Q81X
STAD	TCGA-BR-6802-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000375420.3,ENST00000434513.1,ENST00000452522.1	chr1	17950881:17950998:17952450:17952543:17953824:17953998,	17952451	17952543	17952451	17952451	Nonsense_Mutation	C	T	p.R440X
STAD	TCGA-BR-6802-01	F13B	ENST00000367412.1	chr1	197008320:197008541:197009651:197009865:197019826:197019975,	197009652	197009865	197009701	197009701	Nonsense_Mutation	G	A	p.Q635X
STAD	TCGA-BR-4191-01	CCDC39	ENST00000476379.1,ENST00000273654.4	chr3	180381654:180381774:180397078:180397170:180397395:180397587,	180397079	180397170	180397081	180397081	Nonsense_Mutation	G	A	p.Q30X
STAD	TCGA-BR-4191-01	ICAM3	ENST00000587992.1,ENST00000160262.5	chr19	10446642:10446652:10449357:10449624:10450214:10450295,	10449358	10449624	10449619	10449619	Nonsense_Mutation	G	A	p.Q28X
STAD	TCGA-BR-4191-01	ICAM3	ENST00000589261.1	chr19	10446642:10446652:10449357:10449921:10450214:10450295,	10449358	10449921	10449619	10449619	Nonsense_Mutation	G	A	p.Q28X
STAD	TCGA-BR-4371-01	SLC16A4	ENST00000369781.4,ENST00000369779.4	chr1	110923603:110923765:110925455:110925588:110931858:110931977,110924273:110924417:110925455:110925588:110931858:110931977,	110925456	110925588	110925531	110925531	Nonsense_Mutation	G	A	p.Q49X
STAD	TCGA-BR-4371-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96064238:96064402:96066183:96066445:96068337:96068456,	96066184	96066445	96066442	96066442	Nonsense_Mutation	C	T	p.R1961X
STAD	TCGA-BR-8059-01	OCIAD1	ENST00000512981.1,ENST00000505922.2,ENST00000503016.1,ENST00000512236.1,ENST00000444354.2,ENST00000511102.1,ENST00000510824.1,ENST00000508293.1,ENST00000506801.1,ENST00000396448.2,ENST00000425583.2,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000509246.1,ENST00000381473.3	chr4	48850415:48850463:48851963:48852099:48853822:48853916,	48851964	48852099	48852083	48852083	Nonsense_Mutation	C	T	p.R126X
STAD	TCGA-BR-8059-01	LIG3	ENST00000586058.1,ENST00000378526.4,ENST00000590630.1,ENST00000262327.5	chr17	33323082:33323214:33323592:33323672:33324756:33324844,	33323593	33323672	33323671	33323671	Nonsense_Mutation	A	T	p.R608X
STAD	TCGA-BR-8059-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156152	145156152	Nonsense_Mutation	C	A	p.E868X
STAD	TCGA-BR-8059-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248642	44248642	Nonsense_Mutation	G	A	p.R290X
STAD	TCGA-BR-8059-01	PHGDH	ENST00000369407.3,ENST00000369409.4	chr1	120277256:120277389:120277917:120278066:120279736:120279889,	120277918	120278066	120278064	120278064	Nonsense_Mutation	G	T	p.E264X
STAD	TCGA-BR-8059-01	GLRX3	ENST00000481034.1,ENST00000331244.5,ENST00000368644.1	chr10	131943474:131943583:131958258:131958333:131959059:131959137,	131958259	131958333	131958297	131958297	Nonsense_Mutation	T	A	p.Y80X
STAD	TCGA-BR-8059-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248449	44248449	Nonsense_Mutation	A	T	p.L354X
STAD	TCGA-BR-8059-01	TALDO1	ENST00000319006.3,ENST00000533796.1,ENST00000530119.1,ENST00000528097.1	chr11	755878:756002:758949:759057:760121:760253,	758950	759057	759008	759008	Nonsense_Mutation	G	T	p.E94X
STAD	TCGA-BR-8059-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000337006.4,ENST00000376083.3	chr9	88193834:88194011:88200377:88200509:88201745:88201875,	88200378	88200509	88200433	88200433	Nonsense_Mutation	C	T	p.W997X
STAD	TCGA-D7-6521-01	NAP1L1	ENST00000552147.1,ENST00000542344.1	chr12	76448827:76448870:76449812:76449938:76453577:76453658,	76449813	76449938	76449896	76449896	Nonsense_Mutation	C	A	p.E159X
STAD	TCGA-D7-6521-01	NAP1L1	ENST00000535020.2,ENST00000547529.2,ENST00000547773.1,ENST00000393263.3,ENST00000544816.1,ENST00000549596.1,ENST00000548273.1,ENST00000548044.1,ENST00000551992.1,ENST00000261182.8,ENST00000552056.1	chr12	76448827:76448870:76449812:76449941:76453917:76454059,76448827:76448870:76449812:76449941:76453577:76453658,	76449813	76449941	76449896	76449896	Nonsense_Mutation	C	A	p.E159X
STAD	TCGA-D7-6521-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056214	27056214	Nonsense_Mutation	C	T	p.Q404X
STAD	TCGA-CD-8535-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306X
STAD	TCGA-CD-8535-01	TIMM17B	ENST00000376582.3	chrX	48752320:48752384:48754041:48754141:48755006:48755045,	48754042	48754141	48754135	48754135	Nonsense_Mutation	C	T	p.W11X
STAD	TCGA-CD-8535-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2,ENST00000430789.1	chr2	100360565:100360602:100368682:100368763:100453938:100453986,	100368683	100368763	100368730	100368730	Nonsense_Mutation	G	A	p.Q344X
STAD	TCGA-HU-A4H5-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235860382:235860572:235866046:235866277:235872390:235872608,	235866047	235866277	235866229	235866229	Nonsense_Mutation	G	A	p.R3398X
STAD	TCGA-HU-A4H5-01	ZDHHC8	ENST00000334554.7,ENST00000320602.7,ENST00000405930.3	chr22	20119517:20119574:20126716:20126838:20127000:20127158,	20126717	20126838	20126835	20126835	Nonsense_Mutation	C	T	p.R75X
STAD	TCGA-HU-A4H5-01	DNM2	ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000585892.1,ENST00000359692.6,ENST00000591701.1	chr19	10887844:10887892:10893635:10893796:10897239:10897382,	10893636	10893796	10893683	10893683	Nonsense_Mutation	A	T	p.K246X
STAD	TCGA-HU-A4H5-01	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000585850.1,ENST00000428549.4,ENST00000430352.2,ENST00000586539.1	chr17	66928428:66928655:66929308:66929412:66933091:66933256,	66929309	66929412	66929370	66929370	Nonsense_Mutation	G	C	p.S170X
STAD	TCGA-HU-A4H5-01	TNS4	ENST00000254051.6	chr17	38643287:38643712:38644797:38645221:38652238:38652772,	38644798	38645221	38645216	38645216	Nonsense_Mutation	T	A	p.K149X
STAD	TCGA-HU-A4H5-01	IPO8	ENST00000535989.1,ENST00000540979.1,ENST00000256079.4	chr12	30833455:30833572:30834592:30834751:30837234:30837391,	30834593	30834751	30834694	30834694	Nonsense_Mutation	C	T	p.W127X
STAD	TCGA-D7-A4YU-01	STK24	ENST00000376554.4	chr13	99105168:99105463:99109421:99109558:99112625:99112694,99105168:99105463:99109421:99109558:99114027:99114151,	99109422	99109558	99109504	99109504	Nonsense_Mutation	G	A	p.R405X
STAD	TCGA-D7-A4YU-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192X
STAD	TCGA-D7-A4YU-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214816265	214816265	Nonsense_Mutation	C	A	p.C1528X
STAD	TCGA-BR-4188-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56367672:56367823:56376609:56376788:56377207:56377304,	56376610	56376788	56376642	56376642	Nonsense_Mutation	C	T	p.Q228X
STAD	TCGA-CD-A48A-01	MTMR6	ENST00000381801.5	chr13	25820338:25823630:25825786:25825913:25825990:25826122,	25825787	25825913	25825882	25825882	Nonsense_Mutation	G	A	p.R504X
STAD	TCGA-CD-A489-01	TEX264	ENST00000463857.1,ENST00000489026.1,ENST00000395057.1,ENST00000415259.1,ENST00000457573.1,ENST00000493444.1,ENST00000416589.1,ENST00000341333.5	chr3	51718428:51718650:51733421:51733590:51737739:51737825,	51733422	51733590	51733461	51733461	Nonsense_Mutation	C	T	p.Q174X
STAD	TCGA-BR-8588-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383565	203383565	Nonsense_Mutation	T	A	p.Y214X
STAD	TCGA-BR-8590-01	SLC17A3	ENST00000509714.1,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25855371:25855458:25861851:25861939:25862460:25862672,	25861852	25861939	25861882	25861882	Nonsense_Mutation	G	A	p.R199X
STAD	TCGA-BR-8590-01	ZMYND19	ENST00000298585.2	chr9	140476530:140477138:140477434:140477615:140481418:140481559,	140477435	140477615	140477600	140477600	Nonsense_Mutation	A	C	p.Y125X
STAD	TCGA-FP-A4BE-01	SEPT10	ENST00000397714.2,ENST00000334001.6,ENST00000415095.1,ENST00000437928.1,ENST00000545389.1,ENST00000356688.4,ENST00000397712.2	chr2	110303626:110303814:110310663:110310796:110321942:110322111,	110310664	110310796	110310708	110310708	Nonsense_Mutation	G	A	p.R373X
STAD	TCGA-FP-A4BE-01	TNFRSF10C	ENST00000356864.3	chr8	22960433:22960694:22969232:22969338:22972169:22972283,	22969233	22969338	22969281	22969281	Nonsense_Mutation	C	T	p.Q37X
STAD	TCGA-FP-A4BE-01	METTL4	ENST00000576251.1	chr18	2538451:2539144:2547353:2547528:2552693:2552763,	2547354	2547528	2547407	2547407	Nonsense_Mutation	C	A	p.E341X
STAD	TCGA-FP-A4BE-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233X
STAD	TCGA-FP-A4BE-01	ZC3H13	ENST00000282007.3,ENST00000242848.4	chr13	46594583:46594692:46616298:46616410:46619089:46619199,	46616299	46616410	46616331	46616331	Nonsense_Mutation	G	A	p.R103X
STAD	TCGA-FP-A4BE-01	ADAM7	ENST00000520720.1,ENST00000380789.1,ENST00000175238.6	chr8	24357690:24357769:24358302:24358408:24358989:24359089,	24358303	24358408	24358377	24358377	Nonsense_Mutation	C	T	p.R693X
STAD	TCGA-FP-A4BE-01	EBNA1BP2	ENST00000236051.2,ENST00000463906.1,ENST00000431635.2	chr1	43632830:43632906:43634609:43634699:43636426:43636550,	43634610	43634699	43634636	43634636	Nonsense_Mutation	G	A	p.R226X
STAD	TCGA-FP-A4BE-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230663590:230663765:230663998:230664099:230666967:230667175,	230663999	230664099	230664071	230664071	Nonsense_Mutation	G	A	p.R1004X
STAD	TCGA-FP-A4BE-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000397991.4,ENST00000317104.7,ENST00000489671.1,ENST00000467072.1,ENST00000479040.1,ENST00000486111.1,ENST00000495310.1,ENST00000310282.6,ENST00000467667.1,ENST00000477292.1	chr3	141678641:141678682:141682653:141682805:141688914:141688983,	141682654	141682805	141682772	141682772	Nonsense_Mutation	G	A	p.R256X
STAD	TCGA-FP-A4BE-01	WDR59	ENST00000562331.1,ENST00000536050.1,ENST00000568323.1,ENST00000262144.6,ENST00000563111.1,ENST00000568462.1	chr16	74985355:74985441:74990372:74990508:74999670:74999708,	74990373	74990508	74990459	74990459	Nonsense_Mutation	G	A	p.R52X
STAD	TCGA-FP-A4BE-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37089049:37089174:37090007:37090100:37090394:37090508,	37090008	37090100	37090086	37090086	Nonsense_Mutation	C	T	p.R659X
STAD	TCGA-FP-A4BE-01	AKNAD1	ENST00000369995.3,ENST00000370001.3,ENST00000357393.4	chr1	109377068:109377150:109377550:109377678:109380171:109380328,	109377551	109377678	109377642	109377642	Nonsense_Mutation	G	A	p.R525X
STAD	TCGA-FP-A4BE-01	PPP2R5C	ENST00000555237.1,ENST00000445439.3,ENST00000334743.5,ENST00000328724.5,ENST00000557268.1,ENST00000350249.3,ENST00000422945.2	chr14	102368193:102368226:102375925:102376027:102378737:102378810,102372841:102372866:102375925:102376027:102378737:102378810,	102375926	102376027	102376002	102376002	Nonsense_Mutation	C	T	p.Q465X
STAD	TCGA-FP-A4BE-01	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000529364.1,ENST00000525724.1,ENST00000265686.3	chr11	67812513:67812569:67814899:67815039:67815113:67815265,	67814900	67815039	67815010	67815010	Nonsense_Mutation	C	T	p.R426X
STAD	TCGA-FP-A4BE-01	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1,ENST00000542215.1	chrX	41203282:41203381:41203491:41203652:41204432:41204577,	41203492	41203652	41203552	41203552	Nonsense_Mutation	C	T	p.Q309X
STAD	TCGA-FP-A4BE-01	RACGAP1	ENST00000546786.1	chr12	50396054:50396083:50410413:50410502:50419180:50419221,50399140:50399175:50410413:50410502:50419180:50419221,50400216:50400419:50410413:50410502:50419180:50419221,50400216:50400419:50410413:50410502:50419110:50419183,50399140:50399175:50410413:50410502:50419110:50419183,	50410414	50410502	50410414	50410414	Nonsense_Mutation	G	A	p.Q29X
STAD	TCGA-FP-A4BE-01	RACGAP1	ENST00000548824.1	chr12	50400216:50400419:50410413:50410498:50419110:50419183,50400216:50400419:50410413:50410498:50419180:50419221,50400216:50400419:50410413:50410498:50419155:50419217,	50410414	50410498	50410414	50410414	Nonsense_Mutation	G	A	p.Q29X
STAD	TCGA-CD-8529-01	NAA30	ENST00000556492.1	chr14	57857305:57857423:57857674:57858446:57863469:57863593,	57857675	57858446	57858401	57858401	Nonsense_Mutation	T	A	p.Y242X
STAD	TCGA-CD-8529-01	ADCK1	ENST00000556560.1,ENST00000555217.1,ENST00000341211.5,ENST00000238561.5	chr14	78390799:78390949:78392106:78392304:78397860:78398054,	78392107	78392304	78392220	78392220	Nonsense_Mutation	C	A	p.Y374X
STAD	TCGA-BR-4363-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196X
STAD	TCGA-BR-4363-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949263	116949263	Nonsense_Mutation	C	T	p.R465X
STAD	TCGA-CG-5734-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135205649	135205649	Nonsense_Mutation	G	A	p.Q446X
STAD	TCGA-CG-4301-01	EPB41L3	ENST00000542146.1,ENST00000579271.1	chr18	5397396:5397425:5398019:5398142:5400967:5401042,5397396:5397425:5398019:5398142:5406775:5406967,5397396:5397425:5398019:5398142:5400495:5400594,	5398020	5398142	5398076	5398076	Nonsense_Mutation	G	A	p.R806X
STAD	TCGA-BR-8295-01	DGUOK	ENST00000348222.1	chr2	74154034:74154179:74173845:74174033:74185272:74185372,74166036:74166149:74173845:74174033:74177711:74177859,74166036:74166149:74173845:74174033:74185272:74185372,	74173846	74174033	74173903	74173903	Nonsense_Mutation	C	T	p.R105X
STAD	TCGA-D7-6525-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
STAD	TCGA-BR-8683-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98231219:98231435:98232094:98232213:98238315:98238441,	98232095	98232213	98232138	98232138	Nonsense_Mutation	G	A	p.R602X
STAD	TCGA-BR-8683-01	TNFRSF11B	ENST00000297350.4	chr8	119938748:119938957:119940976:119941168:119945169:119945539,	119940977	119941168	119941043	119941043	Nonsense_Mutation	T	A	p.K176X
STAD	TCGA-BR-8289-01	TULP1	ENST00000229771.6	chr6	35477603:35477705:35478637:35478787:35479424:35479583,	35478638	35478787	35478785	35478785	Nonsense_Mutation	C	A	p.E118X
STAD	TCGA-BR-8289-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000282641.2,ENST00000373995.3,ENST00000395489.2	chr10	52580311:52580409:52587890:52588055:52595833:52596072,	52587891	52588055	52588038	52588038	Nonsense_Mutation	C	A	p.G216X
STAD	TCGA-CG-5723-01	HNF4A	ENST00000316673.4,ENST00000372920.1,ENST00000316099.4	chr20	43052657:43052894:43056974:43057127:43058162:43058311,	43056975	43057127	43057109	43057109	Nonsense_Mutation	C	T	p.R422X
STAD	TCGA-CG-5723-01	FAM166B	ENST00000447837.1,ENST00000399742.2	chr9	35562871:35563077:35563162:35563386:35563763:35563871,	35563163	35563386	35563290	35563290	Nonsense_Mutation	C	T	p.W53X
STAD	TCGA-CG-5723-01	IL12RB1	ENST00000322153.7	chr19	18181371:18182143:18182921:18183159:18184326:18184409,	18182922	18183159	18183096	18183096	Nonsense_Mutation	G	A	p.R283X
STAD	TCGA-CG-5723-01	IRF6	ENST00000542854.1,ENST00000367021.3	chr1	209961696:209961989:209963011:209963130:209963839:209964232,	209963012	209963130	209963054	209963054	Nonsense_Mutation	C	T	p.W379X
STAD	TCGA-CG-5723-01	ARHGAP32	ENST00000526162.1,ENST00000524655.1,ENST00000310343.9,ENST00000527272.1,ENST00000392657.3	chr11	128850447:128850643:128851310:128851456:128851723:128851831,	128851311	128851456	128851443	128851443	Nonsense_Mutation	C	A	p.E536X
STAD	TCGA-CG-5723-01	CUBN	ENST00000377833.4	chr10	16990476:16990605:16991999:16992110:16994274:16994388,	16992000	16992110	16992003	16992003	Nonsense_Mutation	G	A	p.R1693X
STAD	TCGA-CG-5723-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5617148:5617271:5620204:5620409:5624263:5624718,	5620205	5620409	5620258	5620258	Nonsense_Mutation	G	A	p.R885X
STAD	TCGA-CG-5723-01	SMAD9	ENST00000350148.5	chr13	37427555:37427812:37439673:37439895:37446794:37447052,	37439674	37439895	37439797	37439797	Nonsense_Mutation	G	A	p.R294X
STAD	TCGA-CG-5723-01	HHIPL2	ENST00000343410.6	chr1	222715353:222715497:222716878:222717531:222721065:222721445,	222716879	222717531	222716949	222716949	Nonsense_Mutation	C	A	p.E302X
STAD	TCGA-CG-5723-01	SOBP	ENST00000317357.5	chr6	107854662:107854814:107908283:107908379:107954717:107956673,	107908284	107908379	107908293	107908293	Nonsense_Mutation	G	T	p.E195X
STAD	TCGA-D7-6524-01	PKN2	ENST00000316005.7,ENST00000370513.5,ENST00000370505.3,ENST00000370521.3	chr1	89225904:89226059:89236034:89236152:89237103:89237249,	89236035	89236152	89236101	89236101	Nonsense_Mutation	C	T	p.R191X
STAD	TCGA-D7-6524-01	TGFBR1	ENST00000374990.2	chr9	101867431:101867584:101891136:101891382:101894790:101895008,101867431:101867584:101891136:101891382:101900140:101900346,	101891137	101891382	101891357	101891357	Nonsense_Mutation	C	A	p.C106X
STAD	TCGA-HU-A4GQ-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379031	77379031	Nonsense_Mutation	C	T	p.R332X
STAD	TCGA-HU-A4GQ-01	MFSD12	ENST00000389395.3	chr19	3544559:3544730:3544806:3544937:3546071:3546161,3542773:3542975:3544806:3544937:3546071:3546166,3538647:3538754:3544806:3544937:3546071:3546161,	3544807	3544937	3544813	3544813	Nonsense_Mutation	G	A	p.R472X
STAD	TCGA-HU-A4GQ-01	ATXN7L3	ENST00000586688.1,ENST00000389384.4,ENST00000589607.1,ENST00000587097.1,ENST00000593073.1,ENST00000590537.1,ENST00000454077.2,ENST00000591295.1	chr17	42272018:42272042:42272135:42272207:42272464:42272508,	42272136	42272207	42272170	42272170	Nonsense_Mutation	G	A	p.R242X
STAD	TCGA-HU-A4GQ-01	ANAPC15	ENST00000545944.1	chr11	71821635:71821649:71822202:71822332:71823695:71823732,	71822203	71822332	71822259	71822259	Nonsense_Mutation	G	A	p.R22X
STAD	TCGA-HU-A4GQ-01	RICTOR	ENST00000511516.1,ENST00000357387.3,ENST00000510711.1,ENST00000296782.5	chr5	38971978:38972061:38975638:38975706:38978684:38978750,	38975639	38975706	38975690	38975690	Nonsense_Mutation	G	A	p.R280X
STAD	TCGA-HU-A4GQ-01	ASPG	ENST00000546892.2	chr14	104573566:104573682:104575565:104575652:104578256:104578337,	104575566	104575652	104575630	104575630	Nonsense_Mutation	G	T	p.E500X
STAD	TCGA-HU-A4GQ-01	RALGPS2	ENST00000480743.1,ENST00000367635.3	chr1	178858776:178858831:178861364:178861442:178863053:178863126,	178861365	178861442	178861408	178861408	Nonsense_Mutation	C	T	p.R431X
STAD	TCGA-HU-A4GQ-01	CPXM2	ENST00000241305.3	chr10	125521387:125521685:125526488:125526668:125528041:125528238,	125526489	125526668	125526656	125526656	Nonsense_Mutation	C	A	p.G438X
STAD	TCGA-HU-A4GQ-01	CLDN18	ENST00000183605.5	chr3	137729057:137729287:137742499:137742664:137743448:137743566,	137742500	137742664	137742517	137742517	Nonsense_Mutation	C	T	p.R80X
STAD	TCGA-HU-A4GQ-01	SLC26A3	ENST00000340010.5,ENST00000379083.3,ENST00000422236.2	chr7	107417081:107417151:107418619:107418726:107420112:107420208,	107418620	107418726	107418725	107418725	Nonsense_Mutation	A	C	p.L470X
STAD	TCGA-HU-A4GQ-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014243	28014243	Nonsense_Mutation	G	A	p.R115X
STAD	TCGA-BR-A4CR-01	PIK3CD	ENST00000536656.1,ENST00000377346.4,ENST00000361110.2	chr1	9783182:9783350:9784026:9784150:9784333:9784463,	9784027	9784150	9784136	9784136	Nonsense_Mutation	C	T	p.R902X
STAD	TCGA-D7-6520-01	RABGGTB	ENST00000471759.1,ENST00000319942.3,ENST00000535300.1,ENST00000496055.1	chr1	76257145:76257256:76257865:76257991:76259768:76259918,	76257866	76257991	76257946	76257946	Nonsense_Mutation	T	A	p.C220X
STAD	TCGA-FP-7998-01	PPP3CA	ENST00000394854.3,ENST00000394853.4,ENST00000323055.6	chr4	102030110:102030235:102117072:102117273:102267895:102267953,	102117073	102117273	102117123	102117123	Nonsense_Mutation	G	C	p.S70X
STAD	TCGA-D7-6522-01	RGS6	ENST00000434263.2,ENST00000556437.1,ENST00000553530.1,ENST00000555571.1,ENST00000404301.2,ENST00000402788.2,ENST00000406236.4,ENST00000554474.1,ENST00000407322.4,ENST00000554782.1,ENST00000553525.1,ENST00000355512.6	chr14	72961859:72961970:72976861:72976987:72985058:72985245,	72976862	72976987	72976881	72976881	Nonsense_Mutation	C	T	p.R329X
STAD	TCGA-BR-8296-01	PSD4	ENST00000245796.6	chr2	113942620:113942650:113942941:113943017:113943453:113943832,	113942942	113943017	113942985	113942985	Nonsense_Mutation	G	A	p.W406X
STAD	TCGA-BR-8296-01	RAB10	ENST00000473035.1,ENST00000264710.4,ENST00000462003.1	chr2	26321536:26321591:26332636:26332775:26350012:26350102,	26332637	26332775	26332773	26332773	Nonsense_Mutation	G	T	p.E109X
STAD	TCGA-BR-8296-01	GAS2L3	ENST00000547754.1,ENST00000539410.1,ENST00000266754.5,ENST00000537247.1	chr12	101012226:101012365:101016052:101016160:101017339:101018668,	101016053	101016160	101016095	101016095	Nonsense_Mutation	C	T	p.R231X
STAD	TCGA-EQ-8122-01	VPS53	ENST00000573028.1,ENST00000575207.1,ENST00000401468.3,ENST00000574029.1,ENST00000291074.5,ENST00000446250.2,ENST00000389040.5,ENST00000571805.1	chr17	602582:602620:613772:613853:617862:617949,	613773	613853	613826	613826	Nonsense_Mutation	G	A	p.R39X
STAD	TCGA-EQ-8122-01	WDR59	ENST00000562331.1,ENST00000536050.1,ENST00000568323.1,ENST00000262144.6,ENST00000563111.1,ENST00000568462.1	chr16	74985355:74985441:74990372:74990508:74999670:74999708,	74990373	74990508	74990459	74990459	Nonsense_Mutation	G	A	p.R52X
STAD	TCGA-CG-5733-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R485X
STAD	TCGA-CG-5733-01	ACSM2A	ENST00000575690.1,ENST00000219054.6,ENST00000571894.1,ENST00000576361.1	chr16	20462932:20463003:20471428:20471613:20476838:20476978,20463753:20463788:20471428:20471613:20476838:20476978,	20471429	20471613	20471449	20471449	Nonsense_Mutation	C	T	p.R5X
STAD	TCGA-CG-5733-01	PANK2	ENST00000495692.1,ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3893104:3893281:3897573:3897697:3899317:3899436,	3897574	3897697	3897602	3897602	Nonsense_Mutation	C	T	p.R481X
STAD	TCGA-CG-5733-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48221300:48221338:48226430:48226628:48227789:48227893,	48226431	48226628	48226616	48226616	Nonsense_Mutation	G	A	p.R841X
STAD	TCGA-CG-5733-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000409769.2,ENST00000473565.1,ENST00000409403.2	chr2	201721613:201721708:201722440:201722607:201722695:201722812,	201722441	201722607	201722492	201722492	Nonsense_Mutation	G	A	p.R303X
STAD	TCGA-CG-5733-01	CLK1	ENST00000461981.1	chr2	201721404:201721534:201721613:201722607:201722695:201722812,	201721614	201722607	201722492	201722492	Nonsense_Mutation	G	A	p.R303X
STAD	TCGA-CG-5733-01	TMEM63A	ENST00000366835.3,ENST00000487971.1	chr1	226044404:226044439:226044610:226044717:226046895:226047049,	226044611	226044717	226044616	226044616	Nonsense_Mutation	C	T	p.W493X
STAD	TCGA-CG-5733-01	COMMD8	ENST00000381571.4	chr4	47452884:47453682:47455075:47455231:47458593:47458746,	47455076	47455231	47455198	47455198	Nonsense_Mutation	G	A	p.R137X
STAD	TCGA-FP-7829-01	LYPD6B	ENST00000409029.1,ENST00000409642.3,ENST00000498249.1,ENST00000280115.7,ENST00000409876.1	chr2	150061766:150061918:150064827:150064926:150069505:150069636,	150064828	150064926	150064896	150064896	Nonsense_Mutation	C	T	p.R100X
STAD	TCGA-FP-7829-01	PYGL	ENST00000530336.2,ENST00000532462.1,ENST00000216392.7	chr14	51398390:51398494:51401824:51401903:51404453:51404555,	51401825	51401903	51401876	51401876	Nonsense_Mutation	C	A	p.E125X
STAD	TCGA-FP-7829-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659260	86659260	Nonsense_Mutation	A	T	p.K517X
STAD	TCGA-BR-7901-01	ENOSF1	ENST00000251101.7,ENST00000581475.1,ENST00000585128.2,ENST00000340116.7,ENST00000584453.1,ENST00000580982.1,ENST00000583973.1,ENST00000584646.1,ENST00000582745.1,ENST00000584259.2,ENST00000319815.6,ENST00000383578.3	chr18	675320:675402:677344:677444:677742:677836,	677345	677444	677406	677406	Nonsense_Mutation	C	A	p.E370X
STAD	TCGA-BR-7901-01	HADH	ENST00000309522.3,ENST00000403312.1,ENST00000507260.1,ENST00000454409.2,ENST00000505878.1,ENST00000603302.1	chr4	108935625:108935744:108940695:108940822:108944629:108944719,	108940696	108940822	108940820	108940820	Nonsense_Mutation	G	T	p.E182X
STAD	TCGA-BR-8078-01	ZNF197	ENST00000383744.4,ENST00000344387.4	chr3	44666586:44666635:44670565:44671036:44672553:44672713,	44670566	44671036	44670856	44670856	Nonsense_Mutation	G	A	p.W70X
STAD	TCGA-BR-8078-01	ZNF197	ENST00000383745.2	chr3	44666586:44666635:44670556:44671036:44672553:44672713,	44670557	44671036	44670856	44670856	Nonsense_Mutation	G	A	p.W70X
STAD	TCGA-BR-8078-01	GON4L	ENST00000437809.1,ENST00000271883.5	chr1	155722229:155722378:155722994:155723205:155724165:155724279,	155722995	155723205	155722995	155722995	Nonsense_Mutation	C	A	p.G1948X
STAD	TCGA-BR-8078-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939797	137939797	Nonsense_Mutation	G	A	p.R32X
STAD	TCGA-BR-8078-01	NDUFAF6	ENST00000520757.1,ENST00000396124.4,ENST00000286687.4	chr8	96037295:96037433:96044222:96044322:96047681:96047804,	96044223	96044322	96044275	96044275	Nonsense_Mutation	C	T	p.R84X
STAD	TCGA-BR-8078-01	NDUFAF6	ENST00000517976.1,ENST00000520632.1,ENST00000454358.2	chr8	96037295:96037433:96044222:96044326:96047681:96047804,	96044223	96044326	96044275	96044275	Nonsense_Mutation	C	T	p.R84X
STAD	TCGA-BR-8078-01	PLEKHA7	ENST00000355661.3,ENST00000530489.1,ENST00000525781.1,ENST00000531066.1,ENST00000448080.2	chr11	16834659:16834713:16837724:16837811:16838346:16838869,	16837725	16837811	16837793	16837793	Nonsense_Mutation	G	A	p.R629X
STAD	TCGA-BR-8078-01	NEDD4L	ENST00000435432.2,ENST00000586263.1,ENST00000256832.7,ENST00000456173.2,ENST00000382850.4	chr18	56001049:56001124:56008269:56008401:56008909:56009029,	56008270	56008401	56008369	56008369	Nonsense_Mutation	C	T	p.R409X
STAD	TCGA-BR-8078-01	ARMC3	ENST00000484642.1,ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23250867:23251007:23257234:23257418:23270268:23270382,	23257235	23257418	23257331	23257331	Nonsense_Mutation	A	T	p.K277X
STAD	TCGA-BR-8078-01	SLC17A3	ENST00000397060.4,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25850686:25850848:25850986:25851105:25855371:25855458,	25850987	25851105	25851024	25851024	Nonsense_Mutation	G	T	p.S265X
STAD	TCGA-HF-7136-01	SIK2	ENST00000304987.3	chr11	111558724:111558886:111571609:111571734:111572175:111572299,	111571610	111571734	111571702	111571702	Nonsense_Mutation	C	T	p.Q191X
STAD	TCGA-HU-A4GN-01	ZWILCH	ENST00000446801.2,ENST00000562645.1,ENST00000561583.1,ENST00000307897.5,ENST00000535141.2,ENST00000565627.1	chr15	66816014:66816086:66819627:66819721:66820194:66820250,	66819628	66819721	66819666	66819666	Nonsense_Mutation	G	A	p.W286X
STAD	TCGA-HU-A4GN-01	LRP1B	ENST00000389484.3	chr2	141597559:141597654:141598486:141598661:141607670:141607898,	141598487	141598661	141598627	141598627	Nonsense_Mutation	C	T	p.W1658X
STAD	TCGA-HU-A4GN-01	PRKCD	ENST00000487897.1,ENST00000464818.1,ENST00000330452.3	chr3	53199144:53199231:53212419:53212553:53213592:53213710,	53212420	53212553	53212511	53212511	Nonsense_Mutation	C	T	p.Q25X
STAD	TCGA-HU-A4GN-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752324	8752324	Nonsense_Mutation	C	T	p.W171X
STAD	TCGA-HU-A4GN-01	EPHA4	ENST00000541600.1,ENST00000281821.2,ENST00000409854.1,ENST00000409938.1,ENST00000434266.1	chr2	222428998:222429114:222433437:222433505:222436877:222437001,	222433438	222433505	222433479	222433479	Nonsense_Mutation	G	A	p.Q40X
STAD	TCGA-HU-A4GN-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151153326	151153326	Nonsense_Mutation	G	T	p.G1027X
STAD	TCGA-HU-A4GN-01	IFI16	ENST00000483916.1	chr1	159015086:159015254:159021468:159023514:159024610:159024914,159019221:159019389:159021468:159023514:159024610:159024914,	159021469	159023514	159021772	159021772	Nonsense_Mutation	C	T	p.R601X
STAD	TCGA-HU-A4GN-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000368132.3,ENST00000295809.7	chr1	159019221:159019389:159021468:159021888:159023322:159023514,	159021469	159021888	159021772	159021772	Nonsense_Mutation	C	T	p.R601X
STAD	TCGA-HU-A4GN-01	KIF17	ENST00000490034.1,ENST00000375044.1,ENST00000247986.2,ENST00000400463.3,ENST00000477167.1	chr1	20990508:20991255:20992706:20992824:20996913:20996981,	20992707	20992824	20992758	20992758	Nonsense_Mutation	G	A	p.R954X
STAD	TCGA-HU-A4GN-01	CRISPLD1	ENST00000520277.1	chr8	75897104:75897155:75898160:75898480:75924667:75924724,	75898161	75898480	75898439	75898439	Nonsense_Mutation	C	T	p.R73X
STAD	TCGA-BR-A4CQ-01	PPP1R12B	ENST00000290419.5	chr1	202538274:202538325:202544129:202544314:202549601:202549684,	202544130	202544314	202544208	202544208	Nonsense_Mutation	C	T	p.R207X
STAD	TCGA-BR-A4CQ-01	PPP1R12B	ENST00000367270.4	chr1	202538274:202538325:202544129:202544310:202549601:202549684,	202544130	202544310	202544208	202544208	Nonsense_Mutation	C	T	p.R207X
STAD	TCGA-BR-A4CQ-01	CPQ	ENST00000220763.5,ENST00000522617.1	chr8	98041696:98041722:98078236:98078438:98155247:98155416,	98078237	98078438	98078419	98078419	Nonsense_Mutation	G	A	p.W412X
STAD	TCGA-B7-A5TI-01	MRPL46	ENST00000312475.4	chr15	89002838:89003094:89007933:89008107:89010380:89010620,89002838:89003094:89007933:89008107:89008817:89008978,	89007934	89008107	89008087	89008087	Nonsense_Mutation	G	A	p.R146*
STAD	TCGA-B7-A5TI-01	TANGO2	ENST00000399807.3	chr22	20008661:20008769:20024282:20024617:20030877:20030966,20008624:20008657:20024282:20024617:20030877:20030966,	20024283	20024617	20024463	20024463	Nonsense_Mutation	G	T	p.G9*
STAD	TCGA-B7-A5TI-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577085	7577085	Nonsense_Mutation	C	A	p.E285*
STAD	TCGA-B7-A5TI-01	MANEA	ENST00000474553.1,ENST00000358812.4	chr6	96044612:96044722:96052702:96052779:96053623:96053899,	96052703	96052779	96052733	96052733	Nonsense_Mutation	C	T	p.R229*
STAD	TCGA-B7-A5TI-01	ACVR1B	ENST00000563121.1	chr12	52377818:52377950:52378975:52379132:52385646:52385776,	52378976	52379132	52378996	52378996	Nonsense_Mutation	C	T	p.R334*
STAD	TCGA-B7-A5TI-01	HNRNPA2B1	ENST00000354667.4,ENST00000356674.7,ENST00000490912.1	chr7	26231920:26231958:26232114:26232197:26232870:26232993,	26232115	26232197	26232144	26232144	Nonsense_Mutation	G	A	p.R352*
STAD	TCGA-B7-A5TI-01	ATRNL1	ENST00000423111.2,ENST00000355044.3,ENST00000303745.7	chr10	117308967:117309046:117486757:117486865:117607387:117607502,	117486758	117486865	117486773	117486773	Nonsense_Mutation	C	T	p.R1271*
STAD	TCGA-B7-A5TI-01	FTSJ3	ENST00000427159.2,ENST00000583901.1	chr17	61898274:61898298:61898389:61898475:61898713:61899003,	61898390	61898475	61898450	61898450	Nonsense_Mutation	G	A	p.R638*
STAD	TCGA-B7-A5TJ-01	TRIM31	ENST00000376734.3,ENST00000540829.1	chr6	30078224:30078455:30079424:30079520:30080165:30080252,	30079425	30079520	30079499	30079499	Nonsense_Mutation	G	A	p.Q147*
STAD	TCGA-B7-A5TJ-01	TEX10	ENST00000429235.1,ENST00000535814.1,ENST00000374902.4	chr9	103091467:103091557:103092212:103092451:103102538:103102651,	103092213	103092451	103092225	103092225	Nonsense_Mutation	G	A	p.Q493*
STAD	TCGA-B7-A5TK-01	WDR88	ENST00000355868.3,ENST00000361680.2	chr19	33642086:33642216:33647260:33647448:33651319:33651402,	33647261	33647448	33647373	33647373	Nonsense_Mutation	C	T	p.R308*
STAD	TCGA-B7-A5TN-01	LSM6	ENST00000504181.1,ENST00000502781.1,ENST00000296581.5,ENST00000515311.1	chr4	147104074:147104167:147108425:147108539:147110773:147110933,	147108426	147108539	147108527	147108527	Nonsense_Mutation	C	T	p.R66*
STAD	TCGA-D7-A6EV-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58439374	58439374	Nonsense_Mutation	T	A	p.K59*
STAD	TCGA-D7-A6EV-01	ZNF418	ENST00000600989.1	chr19	58434559:58434657:58439344:58439415:58441795:58441880,	58439345	58439415	58439374	58439374	Nonsense_Mutation	T	A	p.K59*
STAD	TCGA-D7-A6EX-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000505747.1	chr2	39996040:39996233:39996849:39997259:39998644:39998780,39995563:39995641:39996849:39997259:39998644:39998780,	39996850	39997259	39996960	39996960	Nonsense_Mutation	C	A	p.E188*
STAD	TCGA-D7-A6EX-01	THUMPD2	ENST00000530522.1	chr2	39995563:39995641:39996897:39997259:39998654:39998780,	39996898	39997259	39996960	39996960	Nonsense_Mutation	C	A	p.E188*
STAD	TCGA-D7-A6EX-01	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9520869:9520937:9525373:9525487:9528422:9528675,	9525374	9525487	9525431	9525431	Nonsense_Mutation	C	T	p.R692*
STAD	TCGA-D7-A6EY-01	NECAP2	ENST00000406746.1,ENST00000457722.2,ENST00000443980.2,ENST00000496239.1,ENST00000459640.1,ENST00000492095.1,ENST00000337132.5	chr1	16774364:16774469:16774554:16774636:16775587:16775693,	16774555	16774636	16774557	16774557	Nonsense_Mutation	C	T	p.R101*
STAD	TCGA-D7-A6EY-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1	chr2	48045917:48046003:48046094:48046217:48047500:48047595,	48046095	48046217	48046160	48046160	Nonsense_Mutation	C	A	p.G619*
STAD	TCGA-D7-A6EY-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53664461:53664582:53666504:53666641:53668600:53668736,	53666505	53666641	53666523	53666523	Nonsense_Mutation	T	A	p.L463*
STAD	TCGA-D7-A6EY-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000231229.4,ENST00000508408.1,ENST00000340184.4,ENST00000505126.1	chr5	180375919:180375946:180376238:180376265:180376903:180377598,	180376239	180376265	180376246	180376246	Nonsense_Mutation	A	T	p.R325*
STAD	TCGA-D7-A6EY-01	PNPLA8	ENST00000257694.8,ENST00000476592.1,ENST00000422087.1,ENST00000388728.5,ENST00000453085.1,ENST00000453144.1,ENST00000436062.1,ENST00000426128.2	chr7	108137926:108138021:108142934:108143086:108154587:108154737,	108142935	108143086	108143062	108143062	Nonsense_Mutation	G	A	p.R411*
STAD	TCGA-D7-A6EY-01	STAT6	ENST00000554764.1,ENST00000543873.2,ENST00000300134.3,ENST00000454075.3,ENST00000538913.2,ENST00000555318.1,ENST00000537215.2,ENST00000556155.1	chr12	57492797:57492861:57493076:57493223:57493549:57493577,	57493077	57493223	57493155	57493155	Nonsense_Mutation	G	A	p.R605*
STAD	TCGA-D7-A6EY-01	FOXN2	ENST00000413569.1,ENST00000340553.3	chr2	48586185:48586286:48589781:48589846:48600430:48600467,	48589782	48589846	48589834	48589834	Nonsense_Mutation	C	T	p.R231*
STAD	TCGA-D7-A6EY-01	SEPT6	ENST00000343984.5	chrX	118759297:118759342:118763280:118763471:118767322:118767387,118752675:118752749:118763280:118763471:118767322:118767387,	118763281	118763471	118763372	118763372	Nonsense_Mutation	T	A	p.K397*
STAD	TCGA-D7-A6EY-01	NDUFAF7	ENST00000483999.1	chr2	37464899:37464978:37468720:37468934:37469777:37469836,	37468721	37468934	37468910	37468910	Nonsense_Mutation	C	T	p.R200*
STAD	TCGA-D7-A6EZ-01	HLA-C	ENST00000376237.4	chr6	31238215:31238262:31238849:31239108:31239375:31239533,	31238850	31239108	31238916	31238916	Nonsense_Mutation	C	A	p.E185*
STAD	TCGA-D7-A6EZ-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000495835.1,ENST00000415537.1	chr6	31238215:31238262:31238849:31239125:31239375:31239533,	31238850	31239125	31238916	31238916	Nonsense_Mutation	C	A	p.E185*
STAD	TCGA-D7-A6EZ-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911227	29911227	Nonsense_Mutation	G	T	p.E176*
STAD	TCGA-D7-A6F0-01	PNPLA5	ENST00000216177.4	chr22	44285678:44285744:44286941:44287174:44287567:44287875,	44286942	44287174	44287076	44287076	Nonsense_Mutation	G	A	p.Q98*
STAD	TCGA-D7-A748-01	MARCO	ENST00000327097.4,ENST00000541757.1	chr2	119749352:119749451:119750007:119750052:119750699:119750876,	119750008	119750052	119750046	119750046	Nonsense_Mutation	G	T	p.E338*
STAD	TCGA-D7-A748-01	SENP3	ENST00000429205.2,ENST00000321337.7,ENST00000578868.1	chr17	7466382:7467108:7467941:7468181:7468275:7468387,	7467942	7468181	7468154	7468154	Nonsense_Mutation	C	T	p.R310*
STAD	TCGA-D7-A74A-01	LRRC36	ENST00000541146.1,ENST00000568010.1	chr16	67404900:67405145:67409160:67409315:67412491:67412615,	67409161	67409315	67409242	67409242	Nonsense_Mutation	C	G	p.S50*
STAD	TCGA-D7-A74A-01	LRRC36	ENST00000290940.7,ENST00000567723.1	chr16	67404900:67405145:67409149:67409315:67412491:67412615,	67409150	67409315	67409242	67409242	Nonsense_Mutation	C	G	p.S50*
STAD	TCGA-D7-A74A-01	EIF3E	ENST00000521614.1,ENST00000522352.1,ENST00000220849.5,ENST00000519030.1	chr8	109214093:109214152:109215211:109215346:109215629:109215732,	109215212	109215346	109215229	109215229	Nonsense_Mutation	G	A	p.Q428*
STAD	TCGA-FP-A8CX-01	NELFCD	ENST00000460601.1,ENST00000344018.3,ENST00000602795.1	chr20	57568536:57568599:57568678:57568819:57569164:57569246,	57568679	57568819	57568760	57568760	Nonsense_Mutation	C	T	p.R526*
STAD	TCGA-FP-A9TM-01	TRAPPC3	ENST00000373163.1,ENST00000373162.1,ENST00000373166.3	chr1	36602862:36602923:36603396:36603579:36605320:36605420,	36603397	36603579	36603533	36603533	Nonsense_Mutation	C	T	p.W96*
STAD	TCGA-HF-A5NB-01	UBE2J2	ENST00000509720.1	chr1	1191428:1191505:1192371:1192510:1198725:1198766,	1192372	1192510	1192459	1192459	Nonsense_Mutation	C	T	p.W57*
STAD	TCGA-HF-A5NB-01	SULT1B1	ENST00000510821.1,ENST00000310613.3	chr4	70615438:70615536:70620387:70620516:70620787:70620919,	70620388	70620516	70620451	70620451	Nonsense_Mutation	G	A	p.R72*
STAD	TCGA-HF-A5NB-01	BEST1	ENST00000526988.1,ENST00000524926.1	chr11	61724858:61724936:61725617:61725973:61726969:61727050,	61725618	61725973	61725899	61725899	Nonsense_Mutation	G	A	p.W226*
STAD	TCGA-HF-A5NB-01	PTPRM	ENST00000444013.1,ENST00000578571.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	8076452:8076562:8085668:8085870:8088746:8088849,	8085669	8085870	8085807	8085807	Nonsense_Mutation	C	T	p.R564*
STAD	TCGA-HF-A5NB-01	EYA4	ENST00000531861.1,ENST00000367895.5,ENST00000355286.6,ENST00000531901.1,ENST00000525849.1,ENST00000430974.2,ENST00000452339.2,ENST00000355167.3,ENST00000431403.2	chr6	133782251:133782318:133783472:133783615:133783758:133783872,	133783473	133783615	133783599	133783599	Nonsense_Mutation	C	A	p.Y188*
STAD	TCGA-HF-A5NB-01	EYA4	ENST00000421413.2	chr6	133782251:133782318:133783501:133783615:133783758:133783872,	133783502	133783615	133783599	133783599	Nonsense_Mutation	C	A	p.Y188*
STAD	TCGA-HF-A5NB-01	RSPH3	ENST00000252655.1,ENST00000367069.2	chr6	159404693:159404839:159407311:159407453:159414870:159414958,	159407312	159407453	159407432	159407432	Nonsense_Mutation	C	A	p.E76*
STAD	TCGA-HF-A5NB-01	NUDT1	ENST00000343985.4,ENST00000397048.1,ENST00000397049.1	chr7	2282559:2282610:2284197:2284361:2289491:2289637,2282559:2282683:2284197:2284361:2289491:2289637,	2284198	2284361	2284282	2284282	Nonsense_Mutation	C	T	p.R48*
STAD	TCGA-HF-A5NB-01	DYRK1A	ENST00000321219.8,ENST00000338785.3,ENST00000451934.1,ENST00000398960.2,ENST00000398956.2,ENST00000339659.4	chr21	38852939:38853128:38858768:38858916:38862476:38862763,	38858769	38858916	38858865	38858865	Nonsense_Mutation	C	T	p.R196*
STAD	TCGA-HF-A5NB-01	ATL2	ENST00000419554.2,ENST00000474535.2,ENST00000378954.4,ENST00000332337.4,ENST00000452935.2	chr2	38545676:38545781:38546026:38546161:38570409:38570557,	38546027	38546161	38546107	38546107	Nonsense_Mutation	G	A	p.R140*
STAD	TCGA-IN-A6RI-01	NTHL1	ENST00000566380.1	chr16	2093567:2093727:2096128:2096367:2097709:2097744,	2096129	2096367	2096247	2096247	Nonsense_Mutation	C	T	p.W87*
STAD	TCGA-IN-A6RL-01	POMT1	ENST00000541219.1,ENST00000485278.1,ENST00000402686.3,ENST00000354713.4,ENST00000404875.2,ENST00000372220.4,ENST00000372228.3,ENST00000423007.1,ENST00000341012.7,ENST00000419118.2	chr9	134396732:134396859:134397433:134397611:134398318:134398535,	134397434	134397611	134397514	134397514	Nonsense_Mutation	G	T	p.E636*
STAD	TCGA-IN-A6RL-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992025	21992025	Nonsense_Mutation	C	A	p.G613*
STAD	TCGA-IN-A6RL-01	LRP1B	ENST00000389484.3,ENST00000437977.1	chr2	141110521:141110641:141113910:141114045:141115547:141115637,	141113911	141114045	141114004	141114004	Nonsense_Mutation	C	A	p.G3813*
STAD	TCGA-IN-A6RP-01	SLC6A15	ENST00000450363.3,ENST00000266682.5	chr12	85279689:85279847:85285610:85286087:85306301:85306484,	85285611	85286087	85285644	85285644	Nonsense_Mutation	G	A	p.R86*
STAD	TCGA-IN-A6RP-01	FHOD3	ENST00000592128.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34335081:34335274:34340570:34340745:34349227:34349389,	34340571	34340745	34340742	34340742	Nonsense_Mutation	C	T	p.R1358*
STAD	TCGA-IN-A6RP-01	ATR	ENST00000350721.4,ENST00000515863.1,ENST00000383101.3	chr3	142274911:142274981:142275224:142275417:142277465:142277618,	142275225	142275417	142275400	142275400	Nonsense_Mutation	G	A	p.R635*
STAD	TCGA-IN-A6RR-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224537	51224537	Nonsense_Mutation	G	A	p.Q1071*
STAD	TCGA-IN-A6RS-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000396104.2	chr16	20491894:20492022:20492143:20492243:20494379:20494499,	20492144	20492243	20492161	20492161	Nonsense_Mutation	C	A	p.S476*
STAD	TCGA-IN-A7NU-01	NUCB2	ENST00000323688.6,ENST00000529010.1,ENST00000529313.1,ENST00000458064.2,ENST00000533773.1,ENST00000530527.1	chr11	17317650:17317758:17323290:17323417:17331118:17331222,	17323291	17323417	17323309	17323309	Nonsense_Mutation	G	T	p.E91*
STAD	TCGA-IN-A7NU-01	ACAT2	ENST00000367048.4,ENST00000467951.1,ENST00000541436.1	chr6	160183950:160184085:160188036:160188218:160189542:160189660,	160188037	160188218	160188041	160188041	Nonsense_Mutation	T	A	p.C65*
STAD	TCGA-IN-AB1X-01	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927177	43927177	Nonsense_Mutation	G	A	p.W360*
STAD	TCGA-IN-AB1X-01	TGFBR1	ENST00000374990.2	chr9	101867431:101867584:101891136:101891382:101894790:101895008,101867431:101867584:101891136:101891382:101900140:101900346,	101891137	101891382	101891277	101891277	Nonsense_Mutation	C	T	p.R80*
STAD	TCGA-KB-A6F7-01	CSGALNACT1	ENST00000397998.3,ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000519222.1	chr8	19315936:19316153:19362711:19363641:19459281:19459376,	19362712	19363641	19362917	19362917	Nonsense_Mutation	A	T	p.Y143*
STAD	TCGA-KB-A93G-01	LTBP1	ENST00000415140.2	chr2	33500975:33500990:33505105:33505225:33518226:33518349,33500975:33500990:33505105:33505225:33525517:33525640,	33505106	33505225	33505201	33505201	Nonsense_Mutation	C	T	p.R1030*
STAD	TCGA-KB-A93G-01	ZYG11B	ENST00000443756.2,ENST00000294353.6	chr1	53279531:53279584:53282203:53282301:53287110:53287401,	53282204	53282301	53282280	53282280	Nonsense_Mutation	C	T	p.Q675*
STAD	TCGA-KB-A93J-01	WDR20	ENST00000556094.1	chr14	102606317:102606509:102661274:102661457:102674939:102675020,102606251:102606324:102661274:102661457:102689166:102689695,	102661275	102661457	102661431	102661431	Nonsense_Mutation	G	T	p.E136*
STAD	TCGA-MX-A5UJ-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730959	150730959	Nonsense_Mutation	G	A	p.W121*
STAD	TCGA-MX-A5UJ-01	CMYA5	ENST00000446378.2	chr5	79057633:79057780:79058884:79059032:79084793:79084927,	79058885	79059032	79058947	79058947	Nonsense_Mutation	C	T	p.R3824*
STAD	TCGA-MX-A5UJ-01	PAPPA	ENST00000328252.3	chr9	118969734:118969880:118973917:118974211:118982215:118982408,	118973918	118974211	118974016	118974016	Nonsense_Mutation	C	T	p.R575*
STAD	TCGA-MX-A5UJ-01	PRICKLE2	ENST00000564377.1,ENST00000295902.6	chr3	64132505:64133378:64138857:64139044:64142837:64143041,	64138858	64139044	64139008	64139008	Nonsense_Mutation	G	A	p.R213*
STAD	TCGA-MX-A5UJ-01	C11orf65	ENST00000393084.1,ENST00000529391.1,ENST00000527531.1	chr11	108277489:108277690:108277822:108277876:108302472:108302565,	108277823	108277876	108277840	108277840	Nonsense_Mutation	G	A	p.R71*
STAD	TCGA-MX-A5UJ-01	ADAM2	ENST00000347580.4,ENST00000265708.4	chr8	39607185:39607263:39613246:39613430:39618694:39618800,	39613247	39613430	39613417	39613417	Nonsense_Mutation	C	A	p.G543*
STAD	TCGA-MX-A5UJ-01	SRF	ENST00000265354.4,ENST00000457278.2	chr6	43141584:43141851:43143443:43143705:43144285:43144405,	43143444	43143705	43143531	43143531	Nonsense_Mutation	C	T	p.Q290*
STAD	TCGA-MX-A663-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375897.3,ENST00000375888.1	chr10	27493375:27493478:27494126:27494177:27497174:27497374,	27494127	27494177	27494141	27494141	Nonsense_Mutation	G	A	p.Q481*
STAD	TCGA-MX-A663-01	SIRT6	ENST00000601571.1,ENST00000601488.1,ENST00000597896.1,ENST00000601069.1	chr19	4179100:4179283:4180778:4180906:4182207:4182276,4179100:4179283:4180778:4180906:4182470:4182497,4177082:4177135:4180778:4180906:4182470:4182497,	4180779	4180906	4180847	4180847	Nonsense_Mutation	C	T	p.W42*
STAD	TCGA-MX-A666-01	CUX2	ENST00000397643.3,ENST00000261726.6	chr12	111701564:111701643:111729221:111729356:111731249:111731373,	111729222	111729356	111729305	111729305	Nonsense_Mutation	C	T	p.R129*
STAD	TCGA-R5-A7O7-01	ANKS1A	ENST00000535627.1,ENST00000360359.3	chr6	34937786:34937943:34949466:34949763:34950528:34950604,	34949467	34949763	34949611	34949611	Nonsense_Mutation	C	T	p.R194*
STAD	TCGA-R5-A7O7-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832826	61832826	Nonsense_Mutation	C	A	p.E2605*
STAD	TCGA-R5-A7ZE-01	ABCA12	ENST00000272895.7,ENST00000389661.4	chr2	215823747:215823802:215831571:215831677:215833443:215833531,	215831572	215831677	215831608	215831608	Nonsense_Mutation	G	A	p.R1950*
STAD	TCGA-R5-A7ZE-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47125209:47125872:47127684:47127804:47129602:47129737,	47127685	47127804	47127693	47127693	Nonsense_Mutation	G	A	p.Q1797*
STAD	TCGA-R5-A7ZF-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578257	7578257	Nonsense_Mutation	C	A	p.E198*
STAD	TCGA-R5-A7ZF-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189859449:189859557:189859771:189859825:189860417:189860516,	189859772	189859825	189859787	189859787	Nonsense_Mutation	C	T	p.R491*
STAD	TCGA-R5-A7ZF-01	TROVE2	ENST00000400968.2,ENST00000367445.3,ENST00000367444.3,ENST00000367441.1,ENST00000416058.2,ENST00000367446.3,ENST00000367443.1	chr1	193028788:193028906:193044949:193045170:193045630:193045777,193038361:193038764:193044949:193045170:193045630:193045777,	193044950	193045170	193045046	193045046	Nonsense_Mutation	T	G	p.L226*
STAD	TCGA-R5-A7ZI-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911960	29911960	Nonsense_Mutation	C	A	p.C227*
STAD	TCGA-R5-A7ZI-01	NELL2	ENST00000452445.2,ENST00000333837.4,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	44917136:44917267:44926363:44926504:45000951:45001047,	44926364	44926504	44926491	44926491	Nonsense_Mutation	G	T	p.C559*
STAD	TCGA-R5-A7ZI-01	ANTXR1	ENST00000409349.3,ENST00000303714.4	chr2	69351696:69351775:69379300:69379396:69397379:69397421,	69379301	69379396	69379378	69379378	Nonsense_Mutation	G	A	p.W343*
STAD	TCGA-R5-A7ZI-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17378635	17378635	Nonsense_Mutation	C	T	p.R396*
STAD	TCGA-R5-A7ZI-01	GALNT13	ENST00000392825.3	chr2	155265522:155265594:155295103:155295238:155306922:155307206,	155295104	155295238	155295134	155295134	Nonsense_Mutation	C	T	p.R476*
STAD	TCGA-R5-A7ZI-01	GPATCH2L	ENST00000312858.5,ENST00000554125.1,ENST00000261530.7	chr14	76618278:76618334:76620696:76621368:76633005:76633070,	76620697	76621368	76621076	76621076	Nonsense_Mutation	C	T	p.R124*
STAD	TCGA-R5-A7ZI-01	TNIP1	ENST00000315050.7,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000521591.1	chr5	150410249:150410308:150411847:150411944:150414562:150414628,150410249:150410308:150411847:150411944:150413168:150413360,	150411848	150411944	150411908	150411908	Nonsense_Mutation	G	A	p.R606*
STAD	TCGA-R5-A7ZR-01	HSPH1	ENST00000445273.2,ENST00000320027.5,ENST00000380405.4,ENST00000429785.2,ENST00000602786.1,ENST00000380406.5	chr13	31722095:31722229:31722510:31722617:31724090:31724319,	31722511	31722617	31722526	31722526	Nonsense_Mutation	G	C	p.S410*
STAD	TCGA-R5-A7ZR-01	NRG1	ENST00000405005.3,ENST00000521670.1,ENST00000522402.1	chr8	32585466:32585596:32599525:32599593:32600192:32600251,32585466:32585596:32599525:32599593:32611889:32611941,	32599526	32599593	32599536	32599536	Nonsense_Mutation	G	T	p.G215*
STAD	TCGA-RD-A7BW-01	CYP11A1	ENST00000419019.2,ENST00000268053.6,ENST00000358632.4	chr15	74630911:74631109:74631577:74631656:74631927:74632094,	74631578	74631656	74631601	74631601	Nonsense_Mutation	G	A	p.R247*
STAD	TCGA-RD-A7C1-01	ANKMY1	ENST00000405002.1,ENST00000462004.1,ENST00000496300.1,ENST00000464991.1	chr2	241492450:241492474:241494282:241494472:241500147:241500185,	241494283	241494472	241494402	241494402	Nonsense_Mutation	C	A	p.E73*
STAD	TCGA-RD-A7C1-01	ST6GAL1	ENST00000169298.3,ENST00000448044.1	chr3	186756529:186756661:186760441:186761098:186769036:186769134,	186760442	186761098	186761057	186761057	Nonsense_Mutation	C	G	p.S189*
STAD	TCGA-RD-A7C1-01	PHLPP2	ENST00000567016.1,ENST00000393524.2,ENST00000568954.1,ENST00000356272.3,ENST00000360429.3,ENST00000538126.1	chr16	71724421:71724612:71736500:71736634:71748414:71748704,	71736501	71736634	71736549	71736549	Nonsense_Mutation	C	A	p.E124*
STAD	TCGA-RD-A8N5-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186094735:186094926:186097209:186097423:186099097:186099232,	186097210	186097423	186097351	186097351	Nonsense_Mutation	C	T	p.R4278*
STAD	TCGA-RD-A8N6-01	ROCK1	ENST00000399799.2	chr18	18566910:18567071:18571136:18571287:18572791:18572898,	18571137	18571287	18571244	18571244	Nonsense_Mutation	G	C	p.S679*
STAD	TCGA-RD-A8N6-01	GINM1	ENST00000367419.5	chr6	149901728:149901859:149903575:149903739:149911862:149912884,	149903576	149903739	149903626	149903626	Nonsense_Mutation	G	A	p.W256*
STAD	TCGA-RD-A8N6-01	KCTD19	ENST00000304372.5,ENST00000570049.1,ENST00000566392.1	chr16	67328875:67328959:67329165:67329308:67330061:67330162,	67329166	67329308	67329221	67329221	Nonsense_Mutation	G	A	p.R446*
STAD	TCGA-RD-A8N6-01	MEIOB	ENST00000325962.3,ENST00000397344.3,ENST00000412554.2,ENST00000470044.1,ENST00000452149.2	chr16	1891820:1891974:1894862:1894964:1903039:1903135,	1894863	1894964	1894929	1894929	Nonsense_Mutation	G	A	p.R272*
STAD	TCGA-RD-A8N6-01	PTPN5	ENST00000477854.1,ENST00000396170.1,ENST00000358540.2,ENST00000396168.1,ENST00000396171.4,ENST00000396167.2	chr11	18750999:18751113:18751204:18751365:18754138:18754249,	18751205	18751365	18751350	18751350	Nonsense_Mutation	G	A	p.R417*
STAD	TCGA-RD-A8N9-01	PSG8	ENST00000600709.1	chr19	43256878:43257528:43258484:43258739:43262153:43262432,	43258485	43258739	43258532	43258532	Nonsense_Mutation	G	T	p.S399*
STAD	TCGA-SW-A7EA-01	TTC7B	ENST00000328459.6,ENST00000555894.1	chr14	91059829:91059970:91077085:91077183:91084272:91084367,	91077086	91077183	91077134	91077134	Nonsense_Mutation	G	A	p.R640*
STAD	TCGA-SW-A7EA-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971139	21971139	Nonsense_Mutation	G	A	p.R88*
STAD	TCGA-SW-A7EA-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971139	21971139	Nonsense_Mutation	G	A	p.R88*
STAD	TCGA-SW-A7EA-01	ANKRD27	ENST00000586693.3,ENST00000590519.2,ENST00000587352.1,ENST00000306065.4	chr19	33135230:33135385:33140587:33140698:33149819:33149951,33137509:33137521:33140587:33140698:33149819:33149951,	33140588	33140698	33140670	33140670	Nonsense_Mutation	G	T	p.S44*
STAD	TCGA-SW-A7EA-01	SFI1	ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000474741.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000432498.1,ENST00000382162.3,ENST00000540643.1	chr22	32009820:32009841:32010774:32010846:32011033:32011265,	32010775	32010846	32010836	32010836	Nonsense_Mutation	C	T	p.Q989*
STAD	TCGA-SW-A7EB-01	PTDSS1	ENST00000337004.4,ENST00000518776.1,ENST00000517309.1,ENST00000522072.1,ENST00000455950.2	chr8	97307419:97307484:97311921:97312073:97316267:97316385,	97311922	97312073	97311962	97311962	Nonsense_Mutation	G	A	p.W214*
STAD	TCGA-VQ-A8DT-01	CDH6	ENST00000514738.1,ENST00000265071.2	chr5	31302217:31302405:31305280:31305534:31313424:31313561,	31305281	31305534	31305340	31305340	Nonsense_Mutation	T	G	p.Y353*
STAD	TCGA-VQ-A8DT-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
STAD	TCGA-VQ-A8DU-01	DHX57	ENST00000452978.1	chr2	39025493:39025584:39029856:39030057:39033700:39033835,39025493:39025584:39029856:39030057:39040962:39041037,	39029857	39030057	39029991	39029991	Nonsense_Mutation	G	A	p.R1295*
STAD	TCGA-VQ-A8DU-01	KDELC2	ENST00000323468.5,ENST00000434945.2	chr11	108348333:108348438:108350027:108350222:108351906:108352103,	108350028	108350222	108350175	108350175	Nonsense_Mutation	A	T	p.Y326*
STAD	TCGA-VQ-A8P2-01	ABHD12	ENST00000339157.5,ENST00000576316.1,ENST00000376542.3	chr20	25284185:25284264:25287468:25287551:25288601:25288669,	25287469	25287551	25287523	25287523	Nonsense_Mutation	C	T	p.W299*
STAD	TCGA-VQ-A8P2-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000557998.1,ENST00000348370.4,ENST00000561186.1	chr15	59350554:59350749:59358962:59359282:59368152:59368414,	59358963	59359282	59359226	59359226	Nonsense_Mutation	C	T	p.Q544*
STAD	TCGA-VQ-A8P2-01	PEX1	ENST00000422866.1,ENST00000541751.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92140893:92141017:92143161:92143281:92146589:92146729,	92143162	92143281	92143170	92143170	Nonsense_Mutation	C	A	p.E451*
STAD	TCGA-VQ-A8P2-01	TTI2	ENST00000360742.5,ENST00000431156.2	chr8	33364746:33364839:33367263:33367450:33369484:33370230,	33367264	33367450	33367405	33367405	Nonsense_Mutation	C	T	p.W231*
STAD	TCGA-VQ-A8P2-01	SNAP47	ENST00000426344.1,ENST00000366759.4,ENST00000315781.5	chr1	227923136:227923200:227935392:227935934:227946695:227947186,	227935393	227935934	227935498	227935498	Nonsense_Mutation	C	T	p.R66*
STAD	TCGA-VQ-A8P2-01	ANO4	ENST00000392977.3,ENST00000392979.3	chr12	101472970:101473053:101477455:101477596:101480437:101480591,	101477456	101477596	101477465	101477465	Nonsense_Mutation	C	T	p.R434*
STAD	TCGA-VQ-A8P2-01	TAPBPL	ENST00000266556.7,ENST00000543567.1,ENST00000539384.1,ENST00000545700.1	chr12	6562232:6562463:6562612:6562882:6566571:6566709,	6562613	6562882	6562830	6562830	Nonsense_Mutation	G	A	p.W171*
STAD	TCGA-VQ-A8P2-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92118685:92118737:92119027:92119225:92120585:92120816,	92119028	92119225	92119117	92119117	Nonsense_Mutation	C	A	p.E1183*
STAD	TCGA-VQ-A8P2-01	PEX1	ENST00000496420.1	chr7	92118685:92118737:92119032:92119225:92120585:92120816,	92119033	92119225	92119117	92119117	Nonsense_Mutation	C	A	p.E1183*
STAD	TCGA-VQ-A8P2-01	DDR2	ENST00000367921.3,ENST00000367922.3	chr1	162741813:162742037:162743258:162743386:162745441:162745633,	162743259	162743386	162743361	162743361	Nonsense_Mutation	C	T	p.R611*
STAD	TCGA-VQ-A8P2-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829761	72829761	Nonsense_Mutation	G	A	p.Q2274*
STAD	TCGA-VQ-A8P2-01	GALNT2	ENST00000541865.1	chr1	230386202:230386306:230390963:230391090:230398318:230398411,230384929:230385017:230390963:230391090:230398318:230398411,	230390964	230391090	230390983	230390983	Nonsense_Mutation	G	A	p.W343*
STAD	TCGA-VQ-A8P2-01	DPY19L4	ENST00000414645.2	chr8	95773929:95774062:95777410:95777542:95777938:95778037,	95777411	95777542	95777453	95777453	Nonsense_Mutation	G	T	p.G305*
STAD	TCGA-VQ-A8P2-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143093268	143093268	Nonsense_Mutation	G	A	p.Q870*
STAD	TCGA-VQ-A8P2-01	ASAP1	ENST00000520342.1,ENST00000521075.1,ENST00000357668.1,ENST00000520927.1,ENST00000519169.1,ENST00000518721.1,ENST00000524367.1	chr8	131200354:131200429:131226801:131226947:131249167:131249240,	131226802	131226947	131226882	131226882	Nonsense_Mutation	G	A	p.R109*
STAD	TCGA-VQ-A8P2-01	FAM49A	ENST00000406434.1,ENST00000451689.1,ENST00000355549.2,ENST00000381323.3,ENST00000445605.1	chr2	16745291:16745362:16746913:16747035:16769317:16769397,	16746914	16747035	16746919	16746919	Nonsense_Mutation	G	A	p.R63*
STAD	TCGA-VQ-A8P2-01	ABCF2	ENST00000287844.2,ENST00000222388.2	chr7	150912689:150912818:150913052:150913115:150915166:150915277,	150913053	150913115	150913091	150913091	Nonsense_Mutation	G	A	p.R455*
STAD	TCGA-VQ-A8P2-01	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142037631:142037745:142048275:142048457:142051216:142051266,	142048276	142048457	142048335	142048335	Nonsense_Mutation	G	A	p.R1448*
STAD	TCGA-VQ-A8P2-01	SORD	ENST00000559230.1	chr15	45335454:45335619:45353179:45353424:45357468:45357587,	45353180	45353424	45353327	45353327	Nonsense_Mutation	C	T	p.R110*
STAD	TCGA-VQ-A8P2-01	SORD	ENST00000558580.1,ENST00000267814.9	chr15	45335454:45335619:45353264:45353424:45357468:45357587,	45353265	45353424	45353327	45353327	Nonsense_Mutation	C	T	p.R110*
STAD	TCGA-VQ-A8P2-01	RSL1D1	ENST00000542106.1,ENST00000396503.3	chr16	11940590:11940700:11941524:11941663:11944135:11944270,11940590:11940700:11941524:11941663:11945264:11945365,	11941525	11941663	11941644	11941644	Nonsense_Mutation	G	A	p.R89*
STAD	TCGA-VQ-A8P2-01	CALML4	ENST00000467889.1	chr15	68489777:68489966:68491878:68492019:68497458:68497489,	68491879	68492019	68491894	68491894	Nonsense_Mutation	G	A	p.Q21*
STAD	TCGA-VQ-A8P2-01	CAND1	ENST00000540319.1,ENST00000545606.1	chr12	67696102:67696395:67698384:67698526:67698883:67699092,	67698385	67698526	67698442	67698442	Nonsense_Mutation	C	T	p.R451*
STAD	TCGA-VQ-A8P2-01	KLHL32	ENST00000369261.4,ENST00000536676.1,ENST00000539200.1	chr6	97533163:97533217:97561658:97562385:97575279:97575338,	97561659	97562385	97562309	97562309	Nonsense_Mutation	G	A	p.W426*
STAD	TCGA-VQ-A8P2-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897723	36897723	Nonsense_Mutation	C	A	p.G1120*
STAD	TCGA-VQ-A8P2-01	SLC19A3	ENST00000258403.3,ENST00000425817.1	chr2	228560604:228560797:228563451:228564280:228566884:228567036,	228563452	228564280	228564103	228564103	Nonsense_Mutation	C	A	p.E110*
STAD	TCGA-VQ-A8P2-01	IL17RB	ENST00000475124.1	chr3	53890870:53891013:53891642:53892845:53894156:53894255,	53891643	53892845	53891664	53891664	Nonsense_Mutation	C	T	p.R232*
STAD	TCGA-VQ-A8P2-01	PKD1	ENST00000480227.1,ENST00000562297.1,ENST00000486339.2,ENST00000487932.1,ENST00000423118.1,ENST00000496574.2,ENST00000262304.4	chr16	2152399:2152634:2152814:2152971:2153266:2153391,	2152815	2152971	2152892	2152892	Nonsense_Mutation	G	T	p.C2957*
STAD	TCGA-VQ-A8P2-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35270299:35270399:35272059:35272194:35276656:35276744,	35272060	35272194	35272164	35272164	Nonsense_Mutation	C	A	p.E253*
STAD	TCGA-VQ-A8P2-01	PARD3B	ENST00000358768.2	chr2	205990332:205990461:206036934:206037105:206041168:206041301,	206036935	206037105	206037055	206037055	Nonsense_Mutation	C	T	p.R581*
STAD	TCGA-VQ-A8P2-01	TTLL7	ENST00000474957.1	chr1	84394818:84394913:84399290:84399449:84464613:84464708,	84399291	84399449	84399300	84399300	Nonsense_Mutation	C	T	p.W346*
STAD	TCGA-VQ-A8P2-01	FOXP2	ENST00000393489.3,ENST00000403559.4,ENST00000350908.4,ENST00000393494.2,ENST00000393498.2,ENST00000408937.3	chr7	114293980:114294064:114298120:114298322:114299410:114299487,	114298121	114298322	114298280	114298280	Nonsense_Mutation	C	T	p.R501*
STAD	TCGA-VQ-A8P2-01	RANGRF	ENST00000580434.1	chr17	8192273:8192390:8192575:8192732:8193130:8193410,	8192576	8192732	8192690	8192690	Nonsense_Mutation	G	A	p.W103*
STAD	TCGA-VQ-A8P2-01	MINK1	ENST00000571207.1,ENST00000572330.1,ENST00000347992.7	chr17	4796273:4796362:4796580:4796604:4796728:4796892,	4796581	4796604	4796590	4796590	Nonsense_Mutation	C	T	p.R767*
STAD	TCGA-VQ-A8P2-01	BAZ1A	ENST00000555273.1,ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35252324:35252438:35252967:35253133:35254982:35255207,	35252968	35253133	35253041	35253041	Nonsense_Mutation	G	A	p.R642*
STAD	TCGA-VQ-A8P2-01	SLC41A3	ENST00000513723.1	chr3	125769785:125769893:125775200:125775356:125786789:125787023,	125775201	125775356	125775344	125775344	Nonsense_Mutation	G	A	p.R18*
STAD	TCGA-VQ-A8P2-01	POP4	ENST00000586823.1	chr19	30097210:30097232:30099563:30099651:30101315:30101364,	30099564	30099651	30099597	30099597	Nonsense_Mutation	C	T	p.R8*
STAD	TCGA-VQ-A8P2-01	POP4	ENST00000221770.3,ENST00000392279.3	chr19	30097210:30097232:30099563:30099616:30101315:30101364,30097210:30097232:30099563:30099616:30102768:30102846,	30099564	30099616	30099597	30099597	Nonsense_Mutation	C	T	p.R8*
STAD	TCGA-VQ-A8P2-01	RIN3	ENST00000553959.1	chr14	93125729:93125814:93142877:93142951:93151331:93151495,	93142878	93142951	93142918	93142918	Nonsense_Mutation	G	T	p.E812*
STAD	TCGA-VQ-A8P2-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000556418.1,ENST00000216487.7	chr14	93125729:93125814:93142819:93142951:93151331:93151495,	93142820	93142951	93142918	93142918	Nonsense_Mutation	G	T	p.E812*
STAD	TCGA-VQ-A8P2-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000520548.1,ENST00000424310.2	chr5	158608967:158609059:158621723:158621832:158630441:158630664,	158621724	158621832	158621768	158621768	Nonsense_Mutation	A	T	p.Y83*
STAD	TCGA-VQ-A8P2-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74287393	74287393	Nonsense_Mutation	G	A	p.R973*
STAD	TCGA-VQ-A8P2-01	SLC4A7	ENST00000437266.1,ENST00000440156.1,ENST00000454389.1,ENST00000425128.2,ENST00000428386.1,ENST00000455077.1,ENST00000419036.1,ENST00000437179.1,ENST00000295736.5,ENST00000428179.1,ENST00000457377.1,ENST00000438530.1,ENST00000446700.1,ENST00000388777.4,ENST00000435667.2,ENST00000445684.1	chr3	27436008:27436260:27436444:27436606:27439174:27439288,	27436445	27436606	27436567	27436567	Nonsense_Mutation	C	A	p.G906*
STAD	TCGA-VQ-A8P2-01	ARHGAP12	ENST00000396144.4,ENST00000375245.4,ENST00000344936.2,ENST00000492028.1,ENST00000375250.5,ENST00000311380.4	chr10	32097576:32097679:32097921:32098056:32098157:32098235,	32097922	32098056	32097970	32097970	Nonsense_Mutation	C	A	p.E709*
STAD	TCGA-VQ-A8P2-01	IQSEC1	ENST00000429247.1	chr3	12938718:12940933:12944272:12944322:12949848:12950025,12942347:12943022:12944272:12944322:12949848:12950025,	12944273	12944322	12944317	12944317	Nonsense_Mutation	G	A	p.R935*
STAD	TCGA-VQ-A8P2-01	RRP36	ENST00000607394.1	chr6	42995097:42995215:42996829:42996928:43001590:43001709,	42996830	42996928	42996916	42996916	Nonsense_Mutation	C	T	p.R244*
STAD	TCGA-VQ-A8P2-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472435	92472435	Nonsense_Mutation	G	A	p.Q629*
STAD	TCGA-VQ-A8P2-01	PLEKHG2	ENST00000458508.2,ENST00000205135.4,ENST00000409794.3,ENST00000425673.1	chr19	39911922:39911939:39912754:39912928:39913371:39913468,	39912755	39912928	39912908	39912908	Nonsense_Mutation	C	T	p.R524*
STAD	TCGA-VQ-A8P2-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39713791:39713815:39716469:39716684:39719640:39719695,	39716470	39716684	39716543	39716543	Nonsense_Mutation	C	A	p.E1200*
STAD	TCGA-VQ-A8P2-01	KIF21A	ENST00000547108.1	chr12	39713791:39713815:39715149:39716684:39719640:39719695,	39715150	39716684	39716543	39716543	Nonsense_Mutation	C	A	p.E1200*
STAD	TCGA-VQ-A8P2-01	TPM1	ENST00000559556.1,ENST00000403994.3,ENST00000560970.1,ENST00000558347.1,ENST00000358278.3	chr15	63335974:63336030:63336225:63336351:63349183:63349209,63335086:63335142:63336225:63336351:63349183:63349209,	63336226	63336351	63336325	63336325	Nonsense_Mutation	G	T	p.E114*
STAD	TCGA-VQ-A8P2-01	TPM1	ENST00000558314.1	chr15	63335086:63335142:63335904:63336351:63349183:63349209,	63335905	63336351	63336325	63336325	Nonsense_Mutation	G	T	p.E114*
STAD	TCGA-VQ-A8P2-01	CTIF	ENST00000256413.3,ENST00000591387.1,ENST00000382998.4,ENST00000587752.1,ENST00000588345.1	chr18	46145908:46146116:46162984:46163056:46190122:46190182,	46162985	46163056	46163033	46163033	Nonsense_Mutation	C	T	p.R77*
STAD	TCGA-VQ-A8P2-01	MASP2	ENST00000400897.3	chr1	11094884:11094963:11097749:11097868:11102931:11103079,	11097750	11097868	11097752	11097752	Nonsense_Mutation	G	A	p.Q336*
STAD	TCGA-VQ-A8P2-01	BTN3A2	ENST00000524682.1	chr6	26368948:26369140:26370549:26370831:26373124:26373170,26368948:26369140:26370549:26370831:26373503:26373524,	26370550	26370831	26370653	26370653	Nonsense_Mutation	G	A	p.W179*
STAD	TCGA-VQ-A8P2-01	CTSE	ENST00000360218.2,ENST00000432969.2,ENST00000358184.2	chr1	206319100:206319218:206320200:206320319:206325237:206325437,	206320201	206320319	206320269	206320269	Nonsense_Mutation	C	T	p.Q138*
STAD	TCGA-VQ-A8P2-01	CXorf56	ENST00000320339.4,ENST00000371594.4,ENST00000536133.1,ENST00000469448.1	chrX	118673532:118673752:118675290:118675383:118676467:118676557,	118675291	118675383	118675299	118675299	Nonsense_Mutation	G	A	p.Q151*
STAD	TCGA-VQ-A8P2-01	RPAP1	ENST00000304330.4	chr15	41810203:41810380:41812588:41813345:41813935:41813989,	41812589	41813345	41813152	41813152	Nonsense_Mutation	G	A	p.R1078*
STAD	TCGA-VQ-A8P2-01	ZKSCAN3	ENST00000377255.3	chr6	28318048:28318165:28327301:28327765:28329100:28329248,	28327302	28327765	28327577	28327577	Nonsense_Mutation	C	T	p.R72*
STAD	TCGA-VQ-A8P2-01	NAA50	ENST00000493454.1,ENST00000493900.1,ENST00000497525.1,ENST00000240922.3	chr3	113441752:113441819:113442268:113442388:113442805:113442939,	113442269	113442388	113442284	113442284	Nonsense_Mutation	G	A	p.R84*
STAD	TCGA-VQ-A8P2-01	NMT1	ENST00000592782.1,ENST00000258960.2	chr17	43175749:43175920:43176772:43176881:43180318:43180489,	43176773	43176881	43176870	43176870	Nonsense_Mutation	C	T	p.R328*
STAD	TCGA-VQ-A8P2-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911640	74911640	Nonsense_Mutation	C	T	p.R183*
STAD	TCGA-VQ-A8P2-01	SEZ6	ENST00000317338.12,ENST00000335960.6,ENST00000442608.3	chr17	27306697:27306831:27308388:27309057:27332832:27332931,	27308389	27309057	27308956	27308956	Nonsense_Mutation	G	A	p.R53*
STAD	TCGA-VQ-A8P2-01	MNDA	ENST00000368141.4	chr1	158813068:158813205:158813744:158813912:158815376:158815793,	158813745	158813912	158813829	158813829	Nonsense_Mutation	G	T	p.G163*
STAD	TCGA-VQ-A8P2-01	RNF43	ENST00000583753.1,ENST00000577716.1,ENST00000500597.2,ENST00000584437.1,ENST00000581868.1,ENST00000577625.1,ENST00000407977.2	chr17	56439904:56440009:56440635:56440767:56440886:56440953,	56440636	56440767	56440741	56440741	Nonsense_Mutation	C	T	p.W159*
STAD	TCGA-VQ-A8P2-01	TOP3A	ENST00000584669.1,ENST00000321105.5,ENST00000583328.1,ENST00000580095.1	chr17	18210204:18210280:18211664:18211738:18212195:18212255,	18211665	18211738	18211672	18211672	Nonsense_Mutation	G	A	p.R103*
STAD	TCGA-VQ-A8P2-01	TOP3A	ENST00000472959.1,ENST00000461127.1	chr17	18210204:18210280:18211626:18211738:18212195:18212255,	18211627	18211738	18211672	18211672	Nonsense_Mutation	G	A	p.R103*
STAD	TCGA-VQ-A8P2-01	DALRD3	ENST00000440857.1	chr3	49053009:49053140:49053251:49053519:49053590:49053773,	49053252	49053519	49053387	49053387	Nonsense_Mutation	C	A	p.G321*
STAD	TCGA-VQ-A8P2-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000466653.1,ENST00000264183.3,ENST00000418304.1,ENST00000491632.1	chr1	235394427:235394504:235397727:235397807:235403627:235403766,	235397728	235397807	235397750	235397750	Nonsense_Mutation	G	A	p.R215*
STAD	TCGA-VQ-A8P2-01	RNF5	ENST00000487940.1,ENST00000427134.2	chr6	32146273:32146428:32147317:32147336:32147427:32147540,	32147318	32147336	32147321	32147321	Nonsense_Mutation	G	A	p.W48*
STAD	TCGA-VQ-A8P2-01	DGKG	ENST00000544847.1,ENST00000490452.1,ENST00000382164.4,ENST00000344484.4,ENST00000265022.3	chr3	185867953:185867977:185879391:185879452:185882686:185882756,	185879392	185879452	185879418	185879418	Nonsense_Mutation	C	A	p.E751*
STAD	TCGA-VQ-A8P2-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000455749.1,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000374875.1,ENST00000265371.4	chr10	33542955:33543122:33545243:33545399:33552573:33552632,	33545244	33545399	33545349	33545349	Nonsense_Mutation	G	A	p.R237*
STAD	TCGA-VQ-A8P2-01	ATXN3	ENST00000556374.1,ENST00000554214.1,ENST00000555816.1,ENST00000393287.5,ENST00000555958.1,ENST00000340660.6,ENST00000556315.1,ENST00000553287.1,ENST00000555381.1,ENST00000359366.5,ENST00000545170.1,ENST00000554040.1,ENST00000554592.1,ENST00000502250.1,ENST00000429774.2,ENST00000554672.1,ENST00000532032.1,ENST00000554491.1,ENST00000556082.1,ENST00000503767.1,ENST00000553309.1	chr14	92549469:92549579:92555073:92555161:92559595:92559662,92549469:92549602:92555073:92555161:92562436:92562481,92549469:92549602:92555073:92555161:92559595:92559662,	92555074	92555161	92555089	92555089	Nonsense_Mutation	G	A	p.Q154*
STAD	TCGA-VQ-A8P2-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000487821.1	chr3	33870344:33870461:33877535:33877758:33879695:33879733,	33877536	33877758	33877665	33877665	Nonsense_Mutation	C	T	p.R322*
STAD	TCGA-VQ-A8P2-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234463	95234463	Nonsense_Mutation	G	A	p.R336*
STAD	TCGA-VQ-A8P2-01	AICDA	ENST00000229335.6,ENST00000545512.1	chr12	8756880:8756933:8757402:8757518:8757810:8758081,	8757403	8757518	8757505	8757505	Nonsense_Mutation	G	T	p.C147*
STAD	TCGA-VQ-A8P2-01	MAST4	ENST00000405643.1,ENST00000403625.2,ENST00000261569.7,ENST00000403666.1,ENST00000404260.3	chr5	66441063:66441207:66445216:66445417:66448464:66448694,	66445217	66445417	66445330	66445330	Nonsense_Mutation	C	T	p.R1073*
STAD	TCGA-VQ-A8P2-01	FDPS	ENST00000465559.1,ENST00000447866.1,ENST00000468479.1,ENST00000489003.1,ENST00000461507.1,ENST00000495308.1,ENST00000491013.1,ENST00000467076.1,ENST00000470171.1,ENST00000477057.1,ENST00000356657.6,ENST00000368356.4	chr1	155278704:155278756:155282045:155282186:155287731:155287773,155279854:155279996:155282045:155282186:155287731:155287773,	155282046	155282186	155282162	155282162	Nonsense_Mutation	G	A	p.W152*
STAD	TCGA-VQ-A8P2-01	FRMD6	ENST00000554167.1,ENST00000344768.5,ENST00000554495.1,ENST00000395718.2,ENST00000356218.4	chr14	52171466:52171653:52174795:52174951:52178248:52178314,	52174796	52174951	52174910	52174910	Nonsense_Mutation	C	T	p.R217*
STAD	TCGA-VQ-A8P2-01	TCN2	ENST00000215838.3,ENST00000407817.3,ENST00000405742.3,ENST00000450638.1,ENST00000493542.1	chr22	31011702:31011774:31013316:31013482:31018954:31019070,	31013317	31013482	31013475	31013475	Nonsense_Mutation	G	T	p.G367*
STAD	TCGA-VQ-A8P2-01	LRP6	ENST00000543091.1,ENST00000261349.4,ENST00000538239.1	chr12	12315126:12315353:12317206:12317496:12318012:12318229,	12317207	12317496	12317329	12317329	Nonsense_Mutation	G	A	p.R644*
STAD	TCGA-VQ-A8P2-01	ATP7B	ENST00000400370.3,ENST00000482841.1,ENST00000242839.4,ENST00000344297.5,ENST00000448424.2,ENST00000400366.3	chr13	52516521:52516690:52518244:52518427:52523797:52523932,52516521:52516690:52518244:52518427:52520419:52520560,	52518245	52518427	52518247	52518247	Nonsense_Mutation	C	A	p.E1081*
STAD	TCGA-VQ-A8P2-01	CCDC125	ENST00000511257.1,ENST00000396499.1,ENST00000396496.2	chr5	68578716:68578861:68581163:68581294:68588014:68588174,	68581164	68581294	68581211	68581211	Nonsense_Mutation	C	A	p.E395*
STAD	TCGA-VQ-A8P2-01	ABI1	ENST00000376170.4,ENST00000376166.1	chr10	27044583:27044670:27047990:27048164:27054146:27054247,27040526:27040712:27047990:27048164:27054146:27054247,	27047991	27048164	27048066	27048066	Nonsense_Mutation	G	A	p.R336*
STAD	TCGA-VQ-A8P2-01	ABI1	ENST00000346832.5	chr10	27044583:27044670:27047990:27048167:27052808:27052889,27044583:27044670:27047990:27048167:27054146:27054247,27040526:27040712:27047990:27048167:27054146:27054247,27040526:27040712:27047990:27048167:27052808:27052889,	27047991	27048167	27048066	27048066	Nonsense_Mutation	G	A	p.R336*
STAD	TCGA-VQ-A8P2-01	NCOR1	ENST00000395851.1,ENST00000268712.3	chr17	15983277:15983378:15983721:15983823:15983920:15984041,	15983722	15983823	15983785	15983785	Nonsense_Mutation	G	A	p.R1113*
STAD	TCGA-VQ-A8P2-01	GALM	ENST00000444351.1	chr2	38893384:38893493:38903053:38903208:38908421:38908490,	38903054	38903208	38903119	38903119	Nonsense_Mutation	G	T	p.G86*
STAD	TCGA-VQ-A8P2-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559049	149559049	Nonsense_Mutation	C	T	p.Q934*
STAD	TCGA-VQ-A8P2-01	PKP1	ENST00000352845.3,ENST00000367324.3,ENST00000263946.3	chr1	201263069:201263173:201282293:201282688:201285680:201285825,	201282294	201282688	201282303	201282303	Nonsense_Mutation	G	T	p.G106*
STAD	TCGA-VQ-A8P2-01	ODF2	ENST00000469582.2,ENST00000351030.3,ENST00000372807.5	chr9	131221845:131221936:131223220:131223346:131231461:131231513,131222837:131222945:131223220:131223346:131231461:131231513,	131223221	131223346	131223343	131223343	Nonsense_Mutation	G	A	p.W82*
STAD	TCGA-VQ-A8P2-01	SNAPC3	ENST00000490969.1,ENST00000467062.1	chr9	15457957:15458065:15459716:15460311:15461628:15461803,	15459717	15460311	15459748	15459748	Nonsense_Mutation	G	T	p.E374*
STAD	TCGA-VQ-A8P2-01	EDNRA	ENST00000339690.5,ENST00000510697.1,ENST00000503721.1,ENST00000506066.1,ENST00000511804.1,ENST00000324300.5,ENST00000358556.4	chr4	148457028:148457181:148460968:148461102:148461528:148461637,	148460969	148461102	148461086	148461086	Nonsense_Mutation	C	T	p.R340*
STAD	TCGA-VQ-A8P2-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30652838	30652838	Nonsense_Mutation	C	A	p.E320*
STAD	TCGA-VQ-A8P2-01	SH2D4B	ENST00000313455.4	chr10	82348385:82348533:82363334:82363551:82369179:82369307,	82363335	82363551	82363484	82363484	Nonsense_Mutation	C	T	p.Q265*
STAD	TCGA-VQ-A8P2-01	CDH12	ENST00000504376.2,ENST00000521384.1,ENST00000522262.1,ENST00000382254.1,ENST00000517378.1	chr5	21765086:21765208:21783466:21783603:21802275:21802529,	21783467	21783603	21783500	21783500	Nonsense_Mutation	G	A	p.Q454*
STAD	TCGA-VQ-A8P2-01	VSNL1	ENST00000295156.4	chr2	17721973:17722185:17773336:17773503:17830676:17830827,	17773337	17773503	17773438	17773438	Nonsense_Mutation	G	T	p.G33*
STAD	TCGA-VQ-A8P2-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855870	100855870	Nonsense_Mutation	G	A	p.Q316*
STAD	TCGA-VQ-A8P2-01	TRIM36	ENST00000514154.1,ENST00000282369.3,ENST00000513154.1	chr5	114469556:114469844:114472696:114472821:114473059:114473313,	114472697	114472821	114472805	114472805	Nonsense_Mutation	C	A	p.E368*
STAD	TCGA-VQ-A8P2-01	OSBP2	ENST00000453621.1,ENST00000535268.1,ENST00000452656.1,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31285166:31285221:31285476:31285623:31286714:31286952,	31285477	31285623	31285528	31285528	Nonsense_Mutation	C	T	p.R510*
STAD	TCGA-VQ-A8P2-01	HHAT	ENST00000391905.3,ENST00000537898.1,ENST00000261458.3	chr1	210501595:210501728:210522276:210522410:210536195:210536263,210502296:210502448:210522276:210522410:210560811:210560925,210502296:210502448:210522276:210522410:210536195:210536263,	210522277	210522410	210522329	210522329	Nonsense_Mutation	C	T	p.R4*
STAD	TCGA-VQ-A8P2-01	PSMD6	ENST00000492933.1,ENST00000476464.1,ENST00000482510.1,ENST00000295901.4,ENST00000394431.2	chr3	63996553:63996631:63999114:63999283:64004274:64004383,	63999115	63999283	63999233	63999233	Nonsense_Mutation	G	A	p.R346*
STAD	TCGA-VQ-A8P2-01	PSG11	ENST00000401740.1,ENST00000320078.7	chr19	43522921:43523200:43528842:43529208:43530460:43530618,	43528843	43529208	43528981	43528981	Nonsense_Mutation	G	A	p.R98*
STAD	TCGA-VQ-A8P2-01	RNF144A	ENST00000320892.6,ENST00000416587.1	chr2	7081078:7081278:7137046:7137192:7154584:7154614,	7137047	7137192	7137148	7137148	Nonsense_Mutation	C	T	p.Q31*
STAD	TCGA-VQ-A8P2-01	EPB41L3	ENST00000540638.2,ENST00000400111.3,ENST00000545076.1,ENST00000542652.2	chr18	5396199:5396331:5397056:5397425:5406775:5406967,	5397057	5397425	5397122	5397122	Nonsense_Mutation	G	A	p.R926*
STAD	TCGA-VQ-A8P2-01	HPS5	ENST00000545561.1,ENST00000438420.2,ENST00000349215.3,ENST00000352460.3,ENST00000544218.1,ENST00000396253.3	chr11	18308137:18308257:18309081:18309237:18309439:18309560,	18309082	18309237	18309206	18309206	Nonsense_Mutation	G	A	p.R751*
STAD	TCGA-VQ-A8P2-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561514	32561514	Nonsense_Mutation	G	T	p.G547*
STAD	TCGA-VQ-A8P2-01	EIF2B3	ENST00000372183.3,ENST00000360403.2,ENST00000439363.1	chr1	45341289:45341367:45345489:45345680:45347283:45347411,	45345490	45345680	45345609	45345609	Nonsense_Mutation	G	A	p.R286*
STAD	TCGA-VQ-A8P2-01	PRSS12	ENST00000296498.3	chr4	119204093:119204266:119216093:119216216:119216932:119217011,	119216094	119216216	119216200	119216200	Nonsense_Mutation	G	A	p.Q645*
STAD	TCGA-VQ-A8P2-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219*
STAD	TCGA-VQ-A8P2-01	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272581	167272581	Nonsense_Mutation	C	T	p.W219*
STAD	TCGA-VQ-A8P2-01	MAPKBP1	ENST00000456763.2,ENST00000502292.1,ENST00000457542.2,ENST00000514566.1	chr15	42106747:42106937:42107456:42107603:42107821:42107997,	42107457	42107603	42107546	42107546	Nonsense_Mutation	G	A	p.W420*
STAD	TCGA-VQ-A8P2-01	TBC1D9	ENST00000442267.2	chr4	141590787:141590958:141591873:141592080:141598047:141598255,	141591874	141592080	141592017	141592017	Nonsense_Mutation	G	A	p.R375*
STAD	TCGA-VQ-A8P2-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014243	28014243	Nonsense_Mutation	G	A	p.R115*
STAD	TCGA-VQ-A8P2-01	SHQ1	ENST00000325599.8,ENST00000444040.2,ENST00000463369.1	chr3	72799109:72799987:72842066:72842187:72861821:72861945,	72842067	72842187	72842081	72842081	Nonsense_Mutation	C	T	p.W389*
STAD	TCGA-VQ-A8P2-01	EED	ENST00000263360.6,ENST00000327320.4,ENST00000534564.1,ENST00000525244.1	chr11	85977124:85977258:85979497:85979603:85988021:85988180,	85979498	85979603	85979574	85979574	Nonsense_Mutation	C	T	p.R313*
STAD	TCGA-VQ-A8P2-01	NOD2	ENST00000300589.2,ENST00000527070.1	chr16	50733398:50733865:50741765:50741871:50744468:50744702,	50741766	50741871	50741838	50741838	Nonsense_Mutation	G	T	p.E205*
STAD	TCGA-VQ-A8P2-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000565918.1,ENST00000443099.2	chr18	66368981:66369027:66377257:66377381:66378600:66378640,	66377258	66377381	66377367	66377367	Nonsense_Mutation	C	T	p.W52*
STAD	TCGA-VQ-A8P2-01	ING3	ENST00000315870.5,ENST00000431467.1	chr7	120595612:120595678:120604795:120604892:120606679:120606751,	120604796	120604892	120604802	120604802	Nonsense_Mutation	C	T	p.R92*
STAD	TCGA-VQ-A8P2-01	CYB5B	ENST00000515314.1	chr16	69458751:69458760:69481052:69481181:69496332:69497681,	69481053	69481181	69481062	69481062	Nonsense_Mutation	G	T	p.G58*
STAD	TCGA-VQ-A8P2-01	AFAP1L2	ENST00000304129.4,ENST00000545353.1,ENST00000369271.3,ENST00000491814.1	chr10	116059952:116060121:116060203:116060449:116061112:116061224,	116060204	116060449	116060389	116060389	Nonsense_Mutation	G	A	p.R535*
STAD	TCGA-VQ-A8P2-01	PNLDC1	ENST00000392167.3,ENST00000275275.5,ENST00000610273.1	chr6	160239586:160239686:160239977:160240153:160240285:160240384,	160239978	160240153	160240107	160240107	Nonsense_Mutation	C	T	p.R452*
STAD	TCGA-VQ-A8P2-01	SP140	ENST00000392045.3,ENST00000420434.3	chr2	231109702:231109795:231110577:231110655:231113599:231113683,231109702:231109786:231110577:231110655:231113599:231113683,231109702:231109795:231110577:231110655:231112630:231112780,	231110578	231110655	231110598	231110598	Nonsense_Mutation	C	T	p.Q229*
STAD	TCGA-VQ-A8P2-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5757990:5758089:5785278:5785491:5795334:5795444,	5785279	5785491	5785417	5785417	Nonsense_Mutation	C	T	p.Q568*
STAD	TCGA-VQ-A8P2-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139629156:139629201:139631697:139631751:139635974:139636028,	139631698	139631751	139631709	139631709	Nonsense_Mutation	G	A	p.R1272*
STAD	TCGA-VQ-A8P2-01	MDM1	ENST00000303145.7,ENST00000545724.1,ENST00000411698.2,ENST00000430606.2	chr12	68718784:68721290:68724886:68725001:68726007:68726035,68720436:68720801:68724886:68725001:68726007:68726035,	68724887	68725001	68724912	68724912	Nonsense_Mutation	C	T	p.W36*
STAD	TCGA-VQ-A8P2-01	KIFAP3	ENST00000538366.1	chr1	170015852:170016007:170024445:170024577:170043576:170043729,	170024446	170024577	170024465	170024465	Nonsense_Mutation	G	A	p.R9*
STAD	TCGA-VQ-A8P2-01	TFCP2	ENST00000549867.1,ENST00000307660.4,ENST00000548115.1,ENST00000257915.5,ENST00000548108.1	chr12	51510097:51510203:51511453:51511530:51512403:51512555,	51511454	51511530	51511513	51511513	Nonsense_Mutation	G	A	p.R98*
STAD	TCGA-VQ-A8P3-01	STK33	ENST00000396672.1,ENST00000315204.1,ENST00000396673.1,ENST00000457885.2,ENST00000534493.1,ENST00000447869.1,ENST00000418597.1,ENST00000422559.2	chr11	8486255:8486369:8494709:8494823:8496227:8496302,	8494710	8494823	8494817	8494817	Nonsense_Mutation	T	A	p.R78*
STAD	TCGA-VQ-A8PE-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470870	44470870	Nonsense_Mutation	G	A	p.R58*
STAD	TCGA-VQ-A8PE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
STAD	TCGA-VQ-A8PE-01	SYNCRIP	ENST00000355238.6,ENST00000369622.3	chr6	86328535:86328657:86328985:86329135:86332199:86332405,	86328986	86329135	86329066	86329066	Nonsense_Mutation	G	A	p.Q360*
STAD	TCGA-VQ-A8PE-01	AGBL2	ENST00000528244.1,ENST00000298861.4,ENST00000528609.1,ENST00000525123.1	chr11	47690392:47690459:47698822:47698953:47701524:47701625,	47698823	47698953	47698917	47698917	Nonsense_Mutation	G	A	p.R685*
STAD	TCGA-VQ-A91Q-01	PDGFRA	ENST00000508170.1,ENST00000504461.1,ENST00000512522.1,ENST00000503856.1,ENST00000509490.1,ENST00000257290.5	chr4	55124923:55124984:55127261:55127579:55129833:55130094,	55127262	55127579	55127506	55127506	Nonsense_Mutation	C	A	p.Y98*
STAD	TCGA-VQ-A91Q-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10091145:10091189:10094070:10094181:10101977:10102087,	10094071	10094181	10094104	10094104	Nonsense_Mutation	C	T	p.Q527*
STAD	TCGA-VQ-A91Q-01	MS4A4A	ENST00000532114.1,ENST00000337908.4,ENST00000355131.3,ENST00000529950.1,ENST00000343968.4,ENST00000395016.3	chr11	60059697:60059857:60064669:60064798:60068473:60068530,	60064670	60064798	60064785	60064785	Nonsense_Mutation	G	A	p.W87*
STAD	TCGA-VQ-A91Q-01	ARHGAP25	ENST00000473986.1	chr2	69034404:69034612:69040420:69040551:69043420:69043494,	69040421	69040551	69040465	69040465	Nonsense_Mutation	C	T	p.R240*
STAD	TCGA-VQ-A91Q-01	ARHGAP25	ENST00000497259.1,ENST00000497079.1,ENST00000409030.3,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1,ENST00000488795.1	chr2	69034407:69034612:69040418:69040551:69043420:69043494,	69040419	69040551	69040465	69040465	Nonsense_Mutation	C	T	p.R240*
STAD	TCGA-VQ-A91V-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128410834:128411137:128505576:128505870:128540066:128540241,	128505577	128505870	128505687	128505687	Nonsense_Mutation	C	T	p.W351*
STAD	TCGA-VQ-A91V-01	GINS1	ENST00000262460.4	chr20	25397739:25397838:25398740:25398831:25405846:25405963,	25398741	25398831	25398808	25398808	Nonsense_Mutation	C	T	p.R103*
STAD	TCGA-VQ-A91V-01	ORC2	ENST00000234296.2	chr2	201791490:201791623:201796061:201796171:201798598:201798697,	201796062	201796171	201796105	201796105	Nonsense_Mutation	G	A	p.Q292*
STAD	TCGA-VQ-A92D-01	SMPD2	ENST00000258052.3	chr6	109763412:109763502:109763745:109763828:109763954:109764087,	109763746	109763828	109763764	109763764	Nonsense_Mutation	C	T	p.R143*
STAD	TCGA-VQ-A92D-01	RNF216	ENST00000425013.2	chr7	5778906:5778983:5780603:5781275:5792476:5792610,	5780604	5781275	5780662	5780662	Nonsense_Mutation	C	T	p.W272*
STAD	TCGA-VQ-A92D-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5780662	5780662	Nonsense_Mutation	C	T	p.W272*
STAD	TCGA-VQ-A92D-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332856	175332856	Nonsense_Mutation	G	A	p.R899*
STAD	TCGA-VQ-A94T-01	NLRP3	ENST00000391827.2,ENST00000336119.3,ENST00000391828.3	chr1	247597464:247597575:247599271:247599442:247607273:247607444,	247599272	247599442	247599287	247599287	Nonsense_Mutation	C	A	p.C838*
STAD	TCGA-VQ-AA64-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56472570	56472570	Nonsense_Mutation	C	A	p.E2253*
STAD	TCGA-VQ-AA64-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56472510	56472510	Nonsense_Mutation	C	A	p.E2273*
STAD	TCGA-VQ-AA64-01	TGFBRAP1	ENST00000258449.1,ENST00000393359.2	chr2	105896838:105897180:105900772:105900855:105912812:105912967,	105900773	105900855	105900792	105900792	Nonsense_Mutation	C	A	p.E368*
STAD	TCGA-VQ-AA64-01	PALB2	ENST00000261584.4,ENST00000568219.1	chr16	23637556:23637718:23640524:23640596:23640960:23641790,	23640525	23640596	23640533	23640533	Nonsense_Mutation	C	A	p.E860*
STAD	TCGA-VQ-AA64-01	FOXK1	ENST00000446823.1,ENST00000328914.4	chr7	4794867:4795014:4796624:4796818:4798681:4798848,	4796625	4796818	4796712	4796712	Nonsense_Mutation	C	T	p.R380*
STAD	TCGA-VQ-AA64-01	CRLF3	ENST00000578692.1,ENST00000544695.1,ENST00000324238.6	chr17	29119457:29119590:29120467:29120690:29123177:29123355,	29120468	29120690	29120654	29120654	Nonsense_Mutation	G	A	p.Q214*
STAD	TCGA-VQ-AA68-01	TRAM1	ENST00000262213.2,ENST00000520700.1,ENST00000521425.1,ENST00000518678.1,ENST00000536748.1	chr8	71510129:71510246:71510368:71510490:71512253:71512317,	71510369	71510490	71510488	71510488	Nonsense_Mutation	C	A	p.E64*
STAD	TCGA-VQ-AA68-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578179	7578179	Nonsense_Mutation	C	A	p.E224*
STAD	TCGA-VQ-AA69-01	TOR1AIP1	ENST00000474875.1,ENST00000528443.2,ENST00000435319.4,ENST00000527391.1,ENST00000606911.2,ENST00000531630.2,ENST00000271583.3	chr1	179870436:179870523:179873100:179873157:179876957:179876999,	179873101	179873157	179873152	179873152	Nonsense_Mutation	C	G	p.S264*
STAD	TCGA-VQ-AA6B-01	PTGIS	ENST00000478971.1,ENST00000244043.4	chr20	48124520:48124601:48127564:48127716:48129616:48129798,	48127565	48127716	48127701	48127701	Nonsense_Mutation	G	A	p.R408*
STAD	TCGA-VQ-AA6B-01	CD44	ENST00000434472.2,ENST00000527889.1,ENST00000525211.1,ENST00000360158.4,ENST00000433354.2,ENST00000526000.1,ENST00000442151.2,ENST00000415148.2,ENST00000428726.2,ENST00000449691.2,ENST00000437706.2,ENST00000263398.6,ENST00000433892.2,ENST00000279452.6,ENST00000528455.1,ENST00000352818.4,ENST00000531118.1	chr11	35198245:35198287:35201820:35201954:35208378:35208447,	35201821	35201954	35201924	35201924	Nonsense_Mutation	C	T	p.Q113*
STAD	TCGA-VQ-AA6B-01	TBL1Y	ENST00000383032.1,ENST00000346432.3,ENST00000355162.2	chrY	6954330:6954458:6955307:6955473:6958129:6958231,	6955308	6955473	6955427	6955427	Nonsense_Mutation	T	A	p.L467*
STAD	TCGA-VQ-AA6B-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56585989	56585989	Nonsense_Mutation	C	G	p.S157*
STAD	TCGA-VQ-AA6G-01	IPO13	ENST00000372343.3,ENST00000492152.1	chr1	44422231:44422373:44422481:44422648:44422866:44422987,	44422482	44422648	44422612	44422612	Nonsense_Mutation	G	A	p.W412*
STAD	TCGA-VQ-AA6G-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177034089	177034089	Nonsense_Mutation	G	T	p.G83*
STAD	TCGA-VQ-AA6G-01	POMGNT1	ENST00000371992.1,ENST00000535522.1,ENST00000371984.3,ENST00000371986.3	chr1	46659945:46660073:46660224:46660323:46660515:46660633,	46660225	46660323	46660274	46660274	Nonsense_Mutation	C	T	p.W234*
STAD	TCGA-VQ-AA6I-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913474	129913474	Nonsense_Mutation	G	A	p.R400*
STAD	TCGA-VQ-AA6I-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
STAD	TCGA-VQ-AA6I-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
STAD	TCGA-VQ-AA6K-01	BCAT1	ENST00000539780.1	chr12	25034234:25034345:25047208:25047409:25054747:25054819,25034234:25034345:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25054747:25054819,	25047209	25047409	25047302	25047302	Nonsense_Mutation	C	T	p.W62*
STAD	TCGA-B7-5816-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499688	42499688	Nonsense_Mutation	C	A	p.G266*
STAD	TCGA-B7-5816-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27523069:27523222:27539918:27540042:27544611:27544708,	27539919	27540042	27539961	27539961	Nonsense_Mutation	G	A	p.Q311*
STAD	TCGA-B7-5816-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57125043:57125180:57126538:57126754:57128574:57128689,	57126539	57126754	57126583	57126583	Nonsense_Mutation	C	A	p.E496*
STAD	TCGA-B7-5816-01	ZNF483	ENST00000358151.4	chr9	114296018:114296145:114296540:114296633:114338644:114340124,	114296541	114296633	114296627	114296627	Nonsense_Mutation	C	T	p.R239*
STAD	TCGA-B7-5818-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268968	115268968	Nonsense_Mutation	G	A	p.Q502*
STAD	TCGA-B7-5818-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122749773:122749883:122754385:122754550:122756298:122756438,	122754386	122754550	122754405	122754405	Nonsense_Mutation	G	A	p.Q553*
STAD	TCGA-BR-4184-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133898950	133898950	Nonsense_Mutation	C	T	p.R445*
STAD	TCGA-BR-4184-01	GUSB	ENST00000345660.6,ENST00000465785.1	chr7	65439390:65439428:65439512:65439691:65441001:65441189,	65439513	65439691	65439577	65439577	Nonsense_Mutation	G	A	p.Q394*
STAD	TCGA-BR-4184-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47703823:47704082:47712147:47712207:47716964:47717060,	47712148	47712207	47712178	47712178	Nonsense_Mutation	C	T	p.W623*
STAD	TCGA-BR-4184-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160605008	160605008	Nonsense_Mutation	C	T	p.R403*
STAD	TCGA-BR-4184-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143092794	143092794	Nonsense_Mutation	G	A	p.R1028*
STAD	TCGA-BR-4184-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000524333.1,ENST00000521155.1	chr8	95885601:95885705:95886779:95886830:95888301:95888370,	95886780	95886830	95886789	95886789	Nonsense_Mutation	C	T	p.R883*
STAD	TCGA-BR-4184-01	SMURF2	ENST00000582081.1,ENST00000585301.1,ENST00000578386.1,ENST00000262435.9	chr17	62567915:62568074:62574609:62574694:62576906:62577109,	62574610	62574694	62574630	62574630	Nonsense_Mutation	C	T	p.W279*
STAD	TCGA-BR-4184-01	SENP1	ENST00000551330.1,ENST00000552189.1,ENST00000339976.6,ENST00000549518.1,ENST00000004980.5,ENST00000549595.1,ENST00000448372.1	chr12	48468472:48468576:48477373:48477545:48482583:48482743,	48477374	48477545	48477397	48477397	Nonsense_Mutation	G	A	p.R177*
STAD	TCGA-BR-4184-01	MDN1	ENST00000428876.1,ENST00000369393.3	chr6	90422293:90422505:90422866:90423015:90424261:90424470,	90422867	90423015	90422950	90422950	Nonsense_Mutation	G	A	p.R2379*
STAD	TCGA-BR-4184-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265781	75265781	Nonsense_Mutation	C	T	p.R1261*
STAD	TCGA-BR-4184-01	BAZ2B	ENST00000355831.2,ENST00000392783.2	chr2	160303346:160303486:160304752:160304920:160335085:160335232,160303346:160303486:160304752:160304920:160310123:160310312,	160304753	160304920	160304907	160304907	Nonsense_Mutation	C	T	p.W116*
STAD	TCGA-BR-4184-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000482503.1	chr2	160303346:160303486:160304752:160304914:160310123:160310312,	160304753	160304914	160304907	160304907	Nonsense_Mutation	C	T	p.W116*
STAD	TCGA-BR-4184-01	ITGA3	ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48141891:48141971:48145419:48145669:48148207:48148294,	48145420	48145669	48145498	48145498	Nonsense_Mutation	C	T	p.R165*
STAD	TCGA-BR-4184-01	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31137485	31137485	Nonsense_Mutation	G	A	p.R617*
STAD	TCGA-BR-4184-01	ABTB1	ENST00000232744.8,ENST00000393363.3,ENST00000475042.1,ENST00000497162.1,ENST00000453791.2,ENST00000468137.1	chr3	127396019:127396129:127396307:127396406:127396518:127396686,	127396308	127396406	127396374	127396374	Nonsense_Mutation	C	T	p.R277*
STAD	TCGA-BR-4184-01	GSTCD	ENST00000515279.1,ENST00000484843.1	chr4	106629974:106630173:106638749:106639196:106640216:106640290,	106638750	106639196	106639056	106639056	Nonsense_Mutation	C	T	p.R96*
STAD	TCGA-BR-4184-01	MGA	ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42032254:42032401:42034743:42035370:42040834:42040910,	42034744	42035370	42035042	42035042	Nonsense_Mutation	T	A	p.Y1628*
STAD	TCGA-BR-4184-01	PAM	ENST00000438793.3,ENST00000509636.1,ENST00000346918.2,ENST00000304400.7,ENST00000379787.4,ENST00000348126.2,ENST00000455264.2	chr5	102202976:102203097:102237059:102237117:102249637:102249725,	102237060	102237117	102237087	102237087	Nonsense_Mutation	C	T	p.R80*
STAD	TCGA-BR-4184-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428873	44428873	Nonsense_Mutation	C	T	p.R179*
STAD	TCGA-BR-4184-01	ME2	ENST00000585680.1	chr18	48452229:48452268:48458627:48458730:48466657:48466756,	48458628	48458730	48458685	48458685	Nonsense_Mutation	C	T	p.R458*
STAD	TCGA-BR-4184-01	ATRN	ENST00000262919.5	chr20	3581600:3581671:3584751:3584909:3596474:3596594,3581592:3581671:3584751:3584909:3605157:3605219,	3584752	3584909	3584894	3584894	Nonsense_Mutation	G	A	p.W1262*
STAD	TCGA-BR-4184-01	GTSE1	ENST00000454366.1	chr22	46709786:46709910:46711928:46712309:46719086:46719159,	46711929	46712309	46712231	46712231	Nonsense_Mutation	C	T	p.R452*
STAD	TCGA-BR-4184-01	UBE2Q1	ENST00000292211.4,ENST00000491572.1	chr1	154523428:154523480:154523872:154523968:154524246:154524277,	154523873	154523968	154523896	154523896	Nonsense_Mutation	G	A	p.R383*
STAD	TCGA-BR-4184-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134459371:134459472:134463921:134464009:134503895:134503959,	134463922	134464009	134463965	134463965	Nonsense_Mutation	C	T	p.R88*
STAD	TCGA-BR-4184-01	RASAL1	ENST00000446861.3,ENST00000261729.5,ENST00000548055.1,ENST00000418411.2	chr12	113544901:113545046:113545889:113546027:113549890:113550083,	113545890	113546027	113545988	113545988	Nonsense_Mutation	G	A	p.R473*
STAD	TCGA-BR-4184-01	RASAL1	ENST00000546530.1	chr12	113544901:113545046:113545889:113546030:113549890:113550083,	113545890	113546030	113545988	113545988	Nonsense_Mutation	G	A	p.R473*
STAD	TCGA-BR-4184-01	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3526408:3526537:3527930:3528136:3529816:3529985,	3527931	3528136	3528132	3528132	Nonsense_Mutation	G	A	p.W313*
STAD	TCGA-BR-4184-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000557060.1,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64540705:64540854:64542662:64542818:64545183:64545324,	64542663	64542818	64542723	64542723	Nonsense_Mutation	C	T	p.R3643*
STAD	TCGA-BR-4184-01	FOXK1	ENST00000446823.1,ENST00000328914.4	chr7	4794867:4795014:4796624:4796818:4798681:4798848,	4796625	4796818	4796712	4796712	Nonsense_Mutation	C	T	p.R380*
STAD	TCGA-BR-4184-01	MCTP1	ENST00000429576.2,ENST00000503301.1	chr5	94259666:94259726:94267657:94267696:94275787:94275880,94248562:94248681:94267657:94267696:94275787:94275880,	94267658	94267696	94267673	94267673	Nonsense_Mutation	C	T	p.W399*
STAD	TCGA-BR-4184-01	PRC1	ENST00000394249.3,ENST00000442656.2,ENST00000555455.1,ENST00000361188.5,ENST00000361919.3	chr15	91513633:91513744:91517365:91517476:91517814:91517961,	91517366	91517476	91517404	91517404	Nonsense_Mutation	G	A	p.R475*
STAD	TCGA-BR-4184-01	KDM3A	ENST00000441719.1,ENST00000312912.5,ENST00000427678.1,ENST00000409556.1,ENST00000409064.1,ENST00000452034.1	chr2	86669170:86669356:86676929:86677085:86678225:86678246,	86676930	86677085	86677062	86677062	Nonsense_Mutation	C	T	p.R107*
STAD	TCGA-BR-4184-01	WWP1	ENST00000518683.1,ENST00000341922.2,ENST00000349423.2,ENST00000520453.1,ENST00000265428.4,ENST00000517970.1	chr8	87447686:87447756:87447861:87447933:87450813:87450902,	87447862	87447933	87447904	87447904	Nonsense_Mutation	C	T	p.Q574*
STAD	TCGA-BR-4184-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R485*
STAD	TCGA-BR-4184-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4776847:4777038:4808213:4808394:4810194:4810448,	4808214	4808394	4808340	4808340	Nonsense_Mutation	G	T	p.G1876*
STAD	TCGA-BR-4184-01	YIPF2	ENST00000592646.1,ENST00000586748.1,ENST00000253031.2,ENST00000586575.1,ENST00000587943.1	chr19	11034171:11034353:11034508:11034675:11034751:11034793,	11034509	11034675	11034602	11034602	Nonsense_Mutation	C	T	p.W186*
STAD	TCGA-BR-4184-01	YIPF2	ENST00000589971.1	chr19	11034171:11034353:11034508:11034656:11034751:11034793,	11034509	11034656	11034602	11034602	Nonsense_Mutation	C	T	p.W186*
STAD	TCGA-BR-4184-01	HBP1	ENST00000461963.1	chr7	106826908:106826917:106827013:106827126:106836278:106836418,	106827014	106827126	106827054	106827054	Nonsense_Mutation	G	A	p.W231*
STAD	TCGA-BR-4184-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752132	36752132	Nonsense_Mutation	C	T	p.R101*
STAD	TCGA-BR-4184-01	TRIM3	ENST00000345851.3,ENST00000359518.3,ENST00000537602.1,ENST00000525074.1,ENST00000536344.1	chr11	6472121:6472290:6472500:6472668:6477301:6477374,	6472501	6472668	6472626	6472626	Nonsense_Mutation	G	A	p.R526*
STAD	TCGA-BR-4188-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56367672:56367823:56376609:56376788:56377207:56377304,	56376610	56376788	56376642	56376642	Nonsense_Mutation	C	T	p.Q228*
STAD	TCGA-BR-4191-01	ICAM3	ENST00000587992.1,ENST00000160262.5	chr19	10446642:10446652:10449357:10449624:10450214:10450295,	10449358	10449624	10449619	10449619	Nonsense_Mutation	G	A	p.Q28*
STAD	TCGA-BR-4191-01	ICAM3	ENST00000589261.1	chr19	10446642:10446652:10449357:10449921:10450214:10450295,	10449358	10449921	10449619	10449619	Nonsense_Mutation	G	A	p.Q28*
STAD	TCGA-BR-4191-01	CCDC39	ENST00000476379.1,ENST00000273654.4	chr3	180381654:180381774:180397078:180397170:180397395:180397587,	180397079	180397170	180397081	180397081	Nonsense_Mutation	G	A	p.Q30*
STAD	TCGA-BR-4191-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95186024:95186224:95186329:95186488:95188768:95188907,	95186330	95186488	95186418	95186418	Nonsense_Mutation	G	C	p.Y165*
STAD	TCGA-BR-4201-01	HDAC1	ENST00000373541.2,ENST00000373548.3,ENST00000482310.1,ENST00000490081.1	chr1	32793136:32793278:32794668:32794761:32796178:32796287,	32794669	32794761	32794717	32794717	Nonsense_Mutation	C	T	p.R229*
STAD	TCGA-BR-4201-01	TMEM183A	ENST00000468449.1	chr1	202984019:202984176:202985087:202985268:202987608:202987689,202984019:202984176:202985087:202985268:202986883:202987047,	202985088	202985268	202985125	202985125	Nonsense_Mutation	C	T	p.R189*
STAD	TCGA-BR-4201-01	CTR9	ENST00000361367.2	chr11	10792033:10792179:10793091:10793163:10794066:10794202,	10793092	10793163	10793117	10793117	Nonsense_Mutation	G	T	p.G800*
STAD	TCGA-BR-4201-01	GPR137	ENST00000546201.1	chr11	64054128:64054353:64054436:64054486:64055811:64055940,	64054437	64054486	64054479	64054479	Nonsense_Mutation	C	T	p.R134*
STAD	TCGA-BR-4201-01	NNMT	ENST00000535401.1,ENST00000299964.3	chr11	114167149:114167432:114168672:114168880:114182766:114182930,	114168673	114168880	114168792	114168792	Nonsense_Mutation	C	T	p.Q92*
STAD	TCGA-BR-4201-01	MANSC1	ENST00000396349.3,ENST00000535902.1	chr12	12482646:12483892:12491353:12491494:12496025:12496107,	12491354	12491494	12491444	12491444	Nonsense_Mutation	G	A	p.Q92*
STAD	TCGA-BR-4201-01	GPN3	ENST00000550974.1,ENST00000543199.1,ENST00000228827.3,ENST00000537466.2	chr12	110895314:110895439:110897499:110897667:110902910:110903019,	110897500	110897667	110897617	110897617	Nonsense_Mutation	G	A	p.R70*
STAD	TCGA-BR-4201-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51206089:51206205:51208299:51208446:51210133:51210247,	51208300	51208446	51208344	51208344	Nonsense_Mutation	C	A	p.E1802*
STAD	TCGA-BR-4201-01	KIAA0556	ENST00000261588.4	chr16	27561472:27561498:27585221:27585277:27629745:27629822,	27585222	27585277	27585252	27585252	Nonsense_Mutation	G	A	p.W13*
STAD	TCGA-BR-4201-01	ALDH3A2	ENST00000571163.1	chr17	19566698:19566812:19568260:19568360:19575033:19575269,19566698:19566812:19568260:19568360:19578870:19579060,	19568261	19568360	19568354	19568354	Nonsense_Mutation	G	T	p.G401*
STAD	TCGA-BR-4201-01	GRAMD1A	ENST00000504615.2,ENST00000598118.1,ENST00000317991.5,ENST00000599564.1,ENST00000411896.2,ENST00000600231.1	chr19	35514201:35514247:35514330:35514451:35516952:35517373,	35514331	35514451	35514416	35514416	Nonsense_Mutation	C	T	p.Q683*
STAD	TCGA-BR-4201-01	CEACAM7	ENST00000401731.1	chr19	42187975:42187994:42190789:42191152:42192030:42192096,	42190790	42191152	42190985	42190985	Nonsense_Mutation	G	A	p.R78*
STAD	TCGA-BR-4201-01	SPRED2	ENST00000440972.1	chr2	65561762:65561907:65571852:65572030:65659095:65659218,	65571853	65572030	65571870	65571870	Nonsense_Mutation	G	A	p.R63*
STAD	TCGA-BR-4201-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088540	109088540	Nonsense_Mutation	C	T	p.R919*
STAD	TCGA-BR-4201-01	GLT8D1	ENST00000481643.1,ENST00000463827.1,ENST00000407584.3,ENST00000394783.3,ENST00000266014.5,ENST00000491606.1,ENST00000478968.2	chr3	52729205:52729318:52729436:52729603:52729943:52730056,	52729437	52729603	52729486	52729486	Nonsense_Mutation	G	A	p.R255*
STAD	TCGA-BR-4201-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131274340:131274395:131283059:131283193:131293914:131293974,	131283060	131283193	131283121	131283121	Nonsense_Mutation	G	A	p.Q334*
STAD	TCGA-BR-4201-01	FAM193A	ENST00000513350.1,ENST00000512465.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000513898.1,ENST00000324666.5	chr4	2664835:2665015:2673847:2674099:2691232:2691277,	2673848	2674099	2673877	2673877	Nonsense_Mutation	T	A	p.C412*
STAD	TCGA-BR-4201-01	ADAMTS6	ENST00000381055.3,ENST00000464680.2,ENST00000470597.1,ENST00000381052.4	chr5	64521912:64522046:64537930:64538033:64556426:64556490,	64537931	64538033	64537967	64537967	Nonsense_Mutation	G	A	p.R633*
STAD	TCGA-BR-4201-01	TDP2	ENST00000545995.1,ENST00000341060.3,ENST00000378198.4	chr6	24651214:24651297:24653210:24653381:24654639:24654758,	24653211	24653381	24653309	24653309	Nonsense_Mutation	G	A	p.R237*
STAD	TCGA-BR-4253-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087145	117087145	Nonsense_Mutation	A	T	p.L51*
STAD	TCGA-BR-4255-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158095	27158095	Nonsense_Mutation	C	T	p.R107*
STAD	TCGA-BR-4256-01	CLPB	ENST00000544382.1,ENST00000437826.2,ENST00000535990.1,ENST00000535477.1,ENST00000538039.1,ENST00000340729.5,ENST00000543042.1,ENST00000294053.3	chr11	72012846:72013008:72013347:72013392:72018242:72018298,	72013348	72013392	72013356	72013356	Nonsense_Mutation	G	A	p.R417*
STAD	TCGA-BR-4256-01	ACAD10	ENST00000455480.2,ENST00000549590.1,ENST00000413681.3,ENST00000509936.1,ENST00000313698.4,ENST00000507135.1,ENST00000392636.2	chr12	112130500:112130700:112139965:112140114:112143541:112143736,	112139966	112140114	112140085	112140085	Nonsense_Mutation	C	T	p.R103*
STAD	TCGA-BR-4256-01	PDS5B	ENST00000450460.1,ENST00000498550.1,ENST00000315596.10	chr13	33252971:33253066:33258014:33258160:33261270:33261422,	33258015	33258160	33258137	33258137	Nonsense_Mutation	A	T	p.R394*
STAD	TCGA-BR-4256-01	KPNB1	ENST00000290158.4,ENST00000577918.1,ENST00000577875.1,ENST00000535458.2,ENST00000540627.1	chr17	45730059:45730242:45734225:45734426:45735873:45736007,	45734226	45734426	45734321	45734321	Nonsense_Mutation	G	A	p.W126*
STAD	TCGA-BR-4256-01	SFTPB	ENST00000428225.1	chr2	85889151:85889232:85890468:85890602:85890786:85890820,	85890469	85890602	85890528	85890528	Nonsense_Mutation	G	A	p.Q315*
STAD	TCGA-BR-4256-01	SFTPB	ENST00000519937.2,ENST00000409383.1,ENST00000393822.3,ENST00000342375.3	chr2	85889151:85889232:85890468:85890614:85890786:85890820,	85890469	85890614	85890528	85890528	Nonsense_Mutation	G	A	p.Q315*
STAD	TCGA-BR-4256-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171728	36171728	Nonsense_Mutation	C	T	p.W252*
STAD	TCGA-BR-4256-01	SLC17A2	ENST00000377850.3	chr6	25913544:25913679:25914807:25914898:25915963:25916096,25913544:25913679:25914807:25914898:25915726:25915874,	25914808	25914898	25914895	25914895	Nonsense_Mutation	A	T	p.Y405*
STAD	TCGA-BR-4256-01	SLC17A2	ENST00000265425.3	chr6	25913544:25913679:25914772:25914898:25915726:25915874,	25914773	25914898	25914895	25914895	Nonsense_Mutation	A	T	p.Y405*
STAD	TCGA-BR-4256-01	ZRSR2	ENST00000307771.7	chrX	15821810:15821919:15822233:15822320:15826355:15826394,	15822234	15822320	15822297	15822297	Nonsense_Mutation	C	T	p.R126*
STAD	TCGA-BR-4257-01	NADK	ENST00000342348.5,ENST00000492845.2,ENST00000400922.2,ENST00000341426.5,ENST00000341991.3	chr1	1687696:1687782:1687941:1688047:1688619:1688667,	1687942	1688047	1687948	1687948	Nonsense_Mutation	G	A	p.R165*
STAD	TCGA-BR-4257-01	MGST3	ENST00000367888.4	chr1	165621249:165621272:165623515:165623588:165624604:165624853,165621214:165621272:165623515:165623588:165630665:165631033,	165623516	165623588	165623555	165623555	Nonsense_Mutation	C	T	p.R97*
STAD	TCGA-BR-4257-01	BAIAP3	ENST00000397488.2,ENST00000421665.2,ENST00000426824.3,ENST00000397489.1,ENST00000568887.1,ENST00000568198.1,ENST00000562208.1,ENST00000324385.5	chr16	1394469:1394526:1394601:1394699:1394798:1394850,	1394602	1394699	1394670	1394670	Nonsense_Mutation	C	A	p.C611*
STAD	TCGA-BR-4257-01	NLRC5	ENST00000538805.1,ENST00000262510.6,ENST00000538930.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000538110.1,ENST00000436936.1	chr16	57088943:57089006:57091976:57092060:57092883:57092973,57089347:57089431:57091976:57092060:57092883:57092973,	57091977	57092060	57092035	57092035	Nonsense_Mutation	C	T	p.Q1269*
STAD	TCGA-BR-4257-01	SERPINB13	ENST00000269489.5,ENST00000344731.5	chr18	61259581:61259710:61260087:61260205:61261259:61261472,61259581:61259710:61260087:61260205:61261588:61261731,	61260088	61260205	61260166	61260166	Nonsense_Mutation	C	T	p.R145*
STAD	TCGA-BR-4257-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210721	37210721	Nonsense_Mutation	T	A	p.Y365*
STAD	TCGA-BR-4257-01	POLQ	ENST00000264233.5,ENST00000488282.1	chr3	121240849:121240996:121248491:121248639:121251836:121252056,	121248492	121248639	121248525	121248525	Nonsense_Mutation	G	A	p.R359*
STAD	TCGA-BR-4280-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59811947	59811947	Nonsense_Mutation	G	A	p.W114*
STAD	TCGA-BR-4280-01	DRG2	ENST00000467099.2,ENST00000582528.1,ENST00000225729.3,ENST00000580055.1,ENST00000395726.4,ENST00000582314.1	chr17	18004808:18004904:18005234:18005311:18007114:18007121,	18005235	18005311	18005286	18005286	Nonsense_Mutation	C	T	p.R261*
STAD	TCGA-BR-4280-01	CDHR2	ENST00000261944.5,ENST00000510636.1,ENST00000506348.1	chr5	176017425:176017486:176017563:176017688:176018210:176018324,	176017564	176017688	176017621	176017621	Nonsense_Mutation	G	T	p.G1158*
STAD	TCGA-BR-4280-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860859	96860859	Nonsense_Mutation	C	T	p.Q617*
STAD	TCGA-BR-4292-01	VPS13C	ENST00000261517.5,ENST00000560637.1,ENST00000249837.3	chr15	62147069:62147153:62148484:62148608:62155638:62155727,	62148485	62148608	62148607	62148607	Nonsense_Mutation	G	A	p.R3652*
STAD	TCGA-BR-4292-01	ACSL3	ENST00000392066.3,ENST00000357430.3	chr2	223789271:223789313:223791734:223791907:223793579:223793654,	223791735	223791907	223791754	223791754	Nonsense_Mutation	C	T	p.R438*
STAD	TCGA-BR-4292-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62598228:62598357:62598733:62598876:62599182:62599305,	62598734	62598876	62598745	62598745	Nonsense_Mutation	G	A	p.R85*
STAD	TCGA-BR-4292-01	AADACL2	ENST00000356517.3	chr3	151451714:151451961:151458433:151458656:151461880:151461950,	151458434	151458656	151458608	151458608	Nonsense_Mutation	C	T	p.R105*
STAD	TCGA-BR-4292-01	LPCAT1	ENST00000475622.1,ENST00000283415.3	chr5	1461954:1463950:1466863:1467005:1470940:1471039,	1466864	1467005	1466903	1466903	Nonsense_Mutation	G	A	p.R461*
STAD	TCGA-BR-4292-01	HOMER1	ENST00000334082.6	chr5	78693349:78693460:78697721:78697878:78734832:78734972,	78697722	78697878	78697766	78697766	Nonsense_Mutation	G	A	p.Q214*
STAD	TCGA-BR-4292-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984642	123984642	Nonsense_Mutation	G	A	p.R479*
STAD	TCGA-BR-4292-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124332920:124333415:124335177:124335306:124338132:124338266,	124335178	124335306	124335285	124335285	Nonsense_Mutation	T	A	p.K1342*
STAD	TCGA-BR-4292-01	TBC1D25	ENST00000537536.1	chrX	48398185:48398308:48399720:48399830:48417284:48417412,48398185:48398308:48399720:48399830:48403256:48403411,	48399721	48399830	48399811	48399811	Nonsense_Mutation	C	T	p.R72*
STAD	TCGA-BR-4292-01	OPHN1	ENST00000355520.5,ENST00000484842.1	chrX	67273486:67273652:67292993:67293141:67316711:67316871,67283695:67284019:67292993:67293141:67316711:67316871,	67292994	67293141	67293039	67293039	Nonsense_Mutation	G	A	p.R597*
STAD	TCGA-BR-4357-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33330312	33330312	Nonsense_Mutation	C	A	p.G1250*
STAD	TCGA-BR-4361-01	DOCK7	ENST00000340370.5,ENST00000251157.5,ENST00000454575.1	chr1	62979141:62979277:62979386:62979569:62993821:62993976,	62979387	62979569	62979473	62979473	Nonsense_Mutation	G	A	p.Q1345*
STAD	TCGA-BR-4361-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644585	70644585	Nonsense_Mutation	C	T	p.R345*
STAD	TCGA-BR-4361-01	SIK2	ENST00000304987.3	chr11	111491062:111491126:111558724:111558886:111571609:111571734,	111558725	111558886	111558769	111558769	Nonsense_Mutation	C	T	p.R121*
STAD	TCGA-BR-4361-01	PLXNC1	ENST00000258526.4,ENST00000551850.1	chr12	94575221:94575356:94580148:94580249:94603365:94603405,	94580149	94580249	94580155	94580155	Nonsense_Mutation	A	T	p.R449*
STAD	TCGA-BR-4361-01	CCNB1IP1	ENST00000557665.1,ENST00000358932.4,ENST00000353689.4,ENST00000398160.2	chr14	20781795:20781960:20784385:20784719:20793697:20793812,	20784386	20784719	20784646	20784646	Nonsense_Mutation	G	A	p.R13*
STAD	TCGA-BR-4361-01	ISM2	ENST00000393684.3,ENST00000429906.1,ENST00000342219.4,ENST00000216481.6	chr14	77944917:77945058:77948664:77949010:77950665:77950908,	77948665	77949010	77948915	77948915	Nonsense_Mutation	C	T	p.W241*
STAD	TCGA-BR-4361-01	JPH3	ENST00000537256.1,ENST00000284262.2,ENST00000563609.1	chr16	87717747:87717872:87723251:87724132:87730185:87730408,	87723252	87724132	87723329	87723329	Nonsense_Mutation	C	T	p.Q455*
STAD	TCGA-BR-4361-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17700169	17700169	Nonsense_Mutation	A	T	p.K1303*
STAD	TCGA-BR-4361-01	ALDH3A2	ENST00000582991.1,ENST00000176643.6,ENST00000395575.2,ENST00000339618.4,ENST00000584332.2,ENST00000579855.1,ENST00000579403.1,ENST00000446398.2,ENST00000581518.1,ENST00000472059.1,ENST00000580550.1,ENST00000467473.1	chr17	19552314:19552437:19554859:19555091:19555859:19555913,	19554860	19555091	19555013	19555013	Nonsense_Mutation	G	T	p.G103*
STAD	TCGA-BR-4361-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20451070:20451477:20453582:20453775:20454623:20454718,	20453583	20453775	20453706	20453706	Nonsense_Mutation	G	T	p.C980*
STAD	TCGA-BR-4361-01	ACTG2	ENST00000438902.2	chr2	74129486:74129615:74135416:74135910:74136181:74136266,	74135417	74135910	74135805	74135805	Nonsense_Mutation	G	A	p.W87*
STAD	TCGA-BR-4361-01	ACTG2	ENST00000409624.1,ENST00000345517.3	chr2	74129486:74129615:74135799:74135910:74136181:74136266,	74135800	74135910	74135805	74135805	Nonsense_Mutation	G	A	p.W87*
STAD	TCGA-BR-4361-01	ALS2	ENST00000439495.1,ENST00000482891.1,ENST00000264276.6,ENST00000457679.2	chr2	202603392:202603458:202606396:202606577:202608980:202609111,	202606397	202606577	202606542	202606542	Nonsense_Mutation	G	A	p.Q736*
STAD	TCGA-BR-4361-01	APOBEC3D	ENST00000381568.4,ENST00000216099.8	chr22	39418826:39419019:39421074:39421354:39421561:39421676,	39421075	39421354	39421135	39421135	Nonsense_Mutation	C	T	p.R91*
STAD	TCGA-BR-4361-01	MYRIP	ENST00000482033.1,ENST00000458292.1,ENST00000302541.6,ENST00000539167.1,ENST00000425621.1,ENST00000459828.1,ENST00000444716.1	chr3	40192538:40192675:40204220:40204301:40208336:40208434,	40204221	40204301	40204292	40204292	Nonsense_Mutation	C	T	p.Q181*
STAD	TCGA-BR-4361-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131388518:131388608:131404718:131404802:131415385:131415460,	131404719	131404802	131404727	131404727	Nonsense_Mutation	G	A	p.R195*
STAD	TCGA-BR-4361-01	MYNN	ENST00000392733.1	chr3	169491214:169491250:169492052:169492349:169496555:169497349,	169492053	169492349	169492087	169492087	Nonsense_Mutation	C	T	p.Q2*
STAD	TCGA-BR-4361-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277794	114277794	Nonsense_Mutation	A	T	p.K2674*
STAD	TCGA-BR-4361-01	GFM2	ENST00000296805.3,ENST00000509430.1,ENST00000345239.2	chr5	74021765:74021951:74026084:74026223:74026426:74026600,74021765:74021951:74026084:74026223:74028846:74028923,	74026085	74026223	74026118	74026118	Nonsense_Mutation	G	A	p.R565*
STAD	TCGA-BR-4361-01	MSH3	ENST00000265081.6	chr5	80071512:80071577:80074538:80074655:80083383:80083491,	80074539	80074655	80074641	80074641	Nonsense_Mutation	G	A	p.W807*
STAD	TCGA-BR-4361-01	PRPF4B	ENST00000494674.1	chr6	4058961:4059048:4060646:4060920:4061248:4061381,	4060647	4060920	4060797	4060797	Nonsense_Mutation	C	T	p.R991*
STAD	TCGA-BR-4361-01	PRPF4B	ENST00000481109.1	chr6	4058961:4059048:4060646:4060878:4061248:4061381,	4060647	4060878	4060797	4060797	Nonsense_Mutation	C	T	p.R991*
STAD	TCGA-BR-4361-01	LRSAM1	ENST00000373324.4	chr9	130249954:130250042:130251722:130251797:130255080:130255176,	130251723	130251797	130251732	130251732	Nonsense_Mutation	C	T	p.Q453*
STAD	TCGA-BR-4362-01	ABI1	ENST00000376160.1,ENST00000376139.2,ENST00000376166.1	chr10	27059173:27059274:27065993:27066170:27112066:27112219,	27065994	27066170	27066140	27066140	Nonsense_Mutation	G	A	p.R106*
STAD	TCGA-BR-4362-01	PAFAH1B2	ENST00000419197.2,ENST00000533206.1,ENST00000527958.1,ENST00000530272.1,ENST00000529887.2	chr11	117023156:117023244:117030649:117030739:117031860:117031977,	117030650	117030739	117030719	117030719	Nonsense_Mutation	C	T	p.Q51*
STAD	TCGA-BR-4362-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984731	11984731	Nonsense_Mutation	C	T	p.Q93*
STAD	TCGA-BR-4362-01	SLC47A2	ENST00000325411.5,ENST00000350657.5,ENST00000467379.1,ENST00000463318.1,ENST00000467609.1,ENST00000433844.2,ENST00000574239.1	chr17	19617137:19617286:19618033:19618102:19618428:19618530,	19618034	19618102	19618075	19618075	Nonsense_Mutation	C	A	p.G85*
STAD	TCGA-BR-4362-01	HMSD	ENST00000481726.1	chr18	61616590:61616634:61621641:61621791:61627391:61627434,	61621642	61621791	61621687	61621687	Nonsense_Mutation	C	T	p.R40*
STAD	TCGA-BR-4362-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128028911:128029029:128030440:128030537:128036748:128036951,	128030441	128030537	128030479	128030479	Nonsense_Mutation	T	A	p.K597*
STAD	TCGA-BR-4362-01	ZNRF3	ENST00000402174.1,ENST00000406323.3,ENST00000544604.2,ENST00000332811.4	chr22	29439286:29439418:29440767:29440878:29442703:29442871,	29440768	29440878	29440867	29440867	Nonsense_Mutation	C	T	p.R145*
STAD	TCGA-BR-4362-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157521838:157522622:157524999:157525130:157527300:157530284,	157525000	157525130	157525016	157525016	Nonsense_Mutation	G	A	p.W1619*
STAD	TCGA-BR-4362-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468223	86468223	Nonsense_Mutation	C	T	p.R465*
STAD	TCGA-BR-4362-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157959622:157959983:157985018:157985187:157997862:157997965,	157985019	157985187	157985114	157985114	Nonsense_Mutation	G	A	p.R152*
STAD	TCGA-BR-4362-01	NOL6	ENST00000297990.4,ENST00000455041.2,ENST00000379471.2	chr9	33465731:33465895:33466068:33466223:33466305:33466423,	33466069	33466223	33466161	33466161	Nonsense_Mutation	G	A	p.R758*
STAD	TCGA-BR-4362-01	MAP7D2	ENST00000379643.5,ENST00000443379.3	chrX	20081531:20081695:20082845:20082923:20134867:20135016,	20082846	20082923	20082870	20082870	Nonsense_Mutation	G	A	p.R62*
STAD	TCGA-BR-4362-01	ACOT9	ENST00000473710.1,ENST00000336430.7,ENST00000494361.1,ENST00000379303.5,ENST00000492081.1,ENST00000379295.1	chrX	23748643:23748681:23748932:23749103:23751288:23751314,	23748933	23749103	23748967	23748967	Nonsense_Mutation	G	A	p.R101*
STAD	TCGA-BR-4362-01	IRAK1	ENST00000369980.3,ENST00000369973.3	chrX	153277309:153277368:153278493:153278884:153279492:153279555,153278035:153278129:153278493:153278884:153281482:153281524,153278035:153278129:153278493:153278884:153279492:153279555,	153278494	153278884	153278860	153278860	Nonsense_Mutation	G	A	p.Q522*
STAD	TCGA-BR-4363-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578263	7578263	Nonsense_Mutation	G	A	p.R196*
STAD	TCGA-BR-4363-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949263	116949263	Nonsense_Mutation	C	T	p.R465*
STAD	TCGA-BR-4366-01	GTF3C3	ENST00000263956.3	chr2	197637730:197637877:197639839:197639975:197640733:197640835,	197639840	197639975	197639881	197639881	Nonsense_Mutation	G	C	p.S597*
STAD	TCGA-BR-4366-01	TNIP1	ENST00000524280.1,ENST00000315050.7,ENST00000518977.1,ENST00000523200.1,ENST00000389378.2,ENST00000519339.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150418657:150418786:150422100:150422232:150422456:150422522,	150422101	150422232	150422226	150422226	Nonsense_Mutation	C	A	p.E337*
STAD	TCGA-BR-4368-01	SMAP2	ENST00000372718.3	chr1	40839368:40839895:40872407:40872541:40874324:40874410,	40872408	40872541	40872413	40872413	Nonsense_Mutation	C	T	p.R37*
STAD	TCGA-BR-4368-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100335955:100336137:100336313:100336425:100340242:100340366,	100336314	100336425	100336320	100336320	Nonsense_Mutation	C	T	p.R285*
STAD	TCGA-BR-4368-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186101459:186101541:186105799:186106069:186106629:186106800,	186105800	186106069	186106003	186106003	Nonsense_Mutation	G	T	p.E4506*
STAD	TCGA-BR-4368-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000367009.1,ENST00000391905.3,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210686496:210686532:210761241:210761443:210796869:210797014,	210761242	210761443	210761245	210761245	Nonsense_Mutation	T	G	p.Y349*
STAD	TCGA-BR-4368-01	TARBP1	ENST00000481183.1,ENST00000040877.1	chr1	234536926:234537008:234541648:234541845:234546190:234546277,	234541649	234541845	234541716	234541716	Nonsense_Mutation	C	A	p.E1308*
STAD	TCGA-BR-4368-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96013946:96014064:96014649:96014806:96018556:96018679,	96014650	96014806	96014707	96014707	Nonsense_Mutation	T	A	p.L1152*
STAD	TCGA-BR-4368-01	CWF19L1	ENST00000370379.1	chr10	101996606:101996726:101997778:101997988:102003454:102003529,101995423:101995521:101997778:101997988:102003454:102003529,	101997779	101997988	101997844	101997844	Nonsense_Mutation	T	A	p.K397*
STAD	TCGA-BR-4368-01	SAV1	ENST00000324679.4	chr14	51107467:51107611:51111461:51111732:51131896:51132083,	51111462	51111732	51111571	51111571	Nonsense_Mutation	G	A	p.R233*
STAD	TCGA-BR-4368-01	CAPN3	ENST00000349748.3	chr15	42679950:42680084:42681125:42681294:42684836:42684920,	42681126	42681294	42681202	42681202	Nonsense_Mutation	G	T	p.E237*
STAD	TCGA-BR-4368-01	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9520869:9520937:9525373:9525487:9528422:9528675,	9525374	9525487	9525431	9525431	Nonsense_Mutation	C	T	p.R692*
STAD	TCGA-BR-4368-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135099160:135099330:135102500:135102635:135107375:135107509,	135102501	135102635	135102526	135102526	Nonsense_Mutation	C	T	p.R335*
STAD	TCGA-BR-4368-01	RBM6	ENST00000442092.1,ENST00000421682.1,ENST00000539992.1,ENST00000419610.1,ENST00000443081.1,ENST00000422955.1,ENST00000454079.1,ENST00000266022.4,ENST00000434592.1	chr3	50103824:50103935:50106122:50106197:50107887:50107985,	50106123	50106197	50106123	50106123	Nonsense_Mutation	C	T	p.Q982*
STAD	TCGA-BR-4368-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167849012:167849102:167850537:167851073:167855037:167855146,	167850538	167851073	167850695	167850695	Nonsense_Mutation	C	T	p.Q478*
STAD	TCGA-BR-4368-01	CYP3A43	ENST00000415413.1,ENST00000481362.1,ENST00000417625.1,ENST00000434806.1,ENST00000354829.2,ENST00000491648.1	chr7	99459235:99459462:99461159:99461322:99463528:99463624,	99461160	99461322	99461224	99461224	Nonsense_Mutation	C	T	p.R440*
STAD	TCGA-BR-4368-01	CYP3A43	ENST00000222382.5	chr7	99459235:99459462:99461156:99461322:99463528:99463624,	99461157	99461322	99461224	99461224	Nonsense_Mutation	C	T	p.R440*
STAD	TCGA-BR-4368-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000436908.1,ENST00000455112.2,ENST00000448002.2	chr7	102495223:102495307:102517913:102518040:102518777:102518897,	102517914	102518040	102518012	102518012	Nonsense_Mutation	G	A	p.R513*
STAD	TCGA-BR-4368-01	MTUS1	ENST00000297488.6	chr8	17532725:17532761:17541836:17542051:17554765:17555179,	17541837	17542051	17542025	17542025	Nonsense_Mutation	G	A	p.R884*
STAD	TCGA-BR-4368-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436812	16436812	Nonsense_Mutation	G	T	p.Y460*
STAD	TCGA-BR-4368-01	ARSF	ENST00000537104.1,ENST00000381127.1,ENST00000359361.2	chrX	3019127:3019262:3021802:3021965:3028168:3028293,	3021803	3021965	3021856	3021856	Nonsense_Mutation	C	T	p.R386*
STAD	TCGA-BR-4369-01	ACSM2B	ENST00000565232.1,ENST00000329697.6,ENST00000569364.1,ENST00000567288.1,ENST00000563943.1,ENST00000565322.1,ENST00000567001.1	chr16	20557721:20557796:20559383:20559507:20559715:20559795,	20559384	20559507	20559473	20559473	Nonsense_Mutation	C	A	p.G337*
STAD	TCGA-BR-4369-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179301024	179301024	Nonsense_Mutation	A	T	p.L211*
STAD	TCGA-BR-4369-01	KLHDC8B	ENST00000332780.2	chr3	49212365:49212399:49212494:49212596:49213037:49213835,	49212495	49212596	49212502	49212502	Nonsense_Mutation	G	A	p.W258*
STAD	TCGA-BR-4370-01	PIGV	ENST00000374145.1,ENST00000078527.4	chr1	27117249:27117384:27120603:27121725:27124053:27124298,	27120604	27121725	27121087	27121087	Nonsense_Mutation	C	T	p.R188*
STAD	TCGA-BR-4370-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752135	36752135	Nonsense_Mutation	G	T	p.G102*
STAD	TCGA-BR-4370-01	FNBP4	ENST00000263773.5,ENST00000534003.1	chr11	47758167:47758292:47765504:47765715:47767607:47767751,	47765505	47765715	47765532	47765532	Nonsense_Mutation	G	A	p.R477*
STAD	TCGA-BR-4370-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000301764.7	chr11	61093082:61093180:61094250:61094365:61099014:61099163,61093082:61093180:61094250:61094365:61096834:61097056,	61094251	61094365	61094323	61094323	Nonsense_Mutation	G	A	p.R198*
STAD	TCGA-BR-4370-01	SPTBN5	ENST00000320955.6	chr15	42160266:42160416:42160595:42160799:42162038:42162218,	42160596	42160799	42160736	42160736	Nonsense_Mutation	G	A	p.Q1938*
STAD	TCGA-BR-4370-01	ZNF280D	ENST00000267807.7,ENST00000560002.1,ENST00000396245.1,ENST00000559237.1,ENST00000558002.1,ENST00000559000.1	chr15	56970861:56971019:56974451:56974675:56981238:56981348,	56974452	56974675	56974620	56974620	Nonsense_Mutation	G	C	p.S279*
STAD	TCGA-BR-4370-01	SEL1L2	ENST00000486903.1,ENST00000378072.5	chr20	13845812:13845887:13847347:13847496:13850148:13850236,	13847348	13847496	13847380	13847380	Nonsense_Mutation	C	A	p.G458*
STAD	TCGA-BR-4370-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37089049:37089174:37090007:37090100:37090394:37090508,	37090008	37090100	37090086	37090086	Nonsense_Mutation	C	T	p.R659*
STAD	TCGA-BR-4370-01	SNX4	ENST00000473417.1,ENST00000465505.2,ENST00000251775.4	chr3	125216677:125216827:125216902:125217038:125223466:125223588,	125216903	125217038	125216990	125216990	Nonsense_Mutation	C	T	p.W104*
STAD	TCGA-BR-4370-01	FAM172A	ENST00000502503.1,ENST00000509163.1,ENST00000395965.3	chr5	93159853:93159973:93217175:93217394:93300162:93300228,93159853:93159973:93217175:93217394:93294481:93294673,	93217176	93217394	93217343	93217343	Nonsense_Mutation	C	A	p.E207*
STAD	TCGA-BR-4370-01	IKBKB	ENST00000519735.1,ENST00000521661.1,ENST00000342222.2,ENST00000518647.1	chr8	42128953:42128987:42129600:42129723:42147673:42147791,42128953:42128987:42129600:42129723:42146151:42146246,	42129601	42129723	42129709	42129709	Nonsense_Mutation	C	T	p.R31*
STAD	TCGA-BR-4370-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961490	135961490	Nonsense_Mutation	G	A	p.R33*
STAD	TCGA-BR-4371-01	SLC16A4	ENST00000369781.4,ENST00000369779.4	chr1	110923603:110923765:110925455:110925588:110931858:110931977,110924273:110924417:110925455:110925588:110931858:110931977,	110925456	110925588	110925531	110925531	Nonsense_Mutation	G	A	p.Q49*
STAD	TCGA-BR-4371-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96064238:96064402:96066183:96066445:96068337:96068456,	96066184	96066445	96066442	96066442	Nonsense_Mutation	C	T	p.R1961*
STAD	TCGA-BR-6452-01	MAP3K6	ENST00000472410.1,ENST00000493901.1,ENST00000357582.2,ENST00000374040.3	chr1	27688195:27688358:27688581:27688741:27689131:27689244,	27688582	27688741	27688704	27688704	Nonsense_Mutation	G	T	p.C431*
STAD	TCGA-BR-6452-01	PTPRU	ENST00000323874.8,ENST00000460170.2,ENST00000373779.3,ENST00000428026.2,ENST00000531385.1,ENST00000356870.3	chr1	29610451:29610488:29611242:29611381:29618380:29618538,	29611243	29611381	29611288	29611288	Nonsense_Mutation	C	A	p.S742*
STAD	TCGA-BR-6452-01	PUM1	ENST00000526215.1	chr1	31454184:31454252:31479840:31479949:31501642:31501711,	31479841	31479949	31479866	31479866	Nonsense_Mutation	C	T	p.W172*
STAD	TCGA-BR-6452-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503449	32503449	Nonsense_Mutation	G	T	p.G307*
STAD	TCGA-BR-6452-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503449	32503449	Nonsense_Mutation	G	T	p.G307*
STAD	TCGA-BR-6452-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42046988	42046988	Nonsense_Mutation	C	A	p.E1161*
STAD	TCGA-BR-6452-01	BRDT	ENST00000427104.1	chr1	92415861:92416031:92428274:92428503:92430183:92430279,	92428275	92428503	92428390	92428390	Nonsense_Mutation	C	T	p.R27*
STAD	TCGA-BR-6452-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209797184:209797345:209798992:209799371:209800211:209800316,	209798993	209799371	209799327	209799327	Nonsense_Mutation	T	A	p.K548*
STAD	TCGA-BR-6452-01	TP53BP2	ENST00000483398.1,ENST00000498843.1,ENST00000343537.7,ENST00000391879.2,ENST00000391878.2	chr1	223968490:223968596:223971816:223972016:223976709:223976876,	223971817	223972016	223971921	223971921	Nonsense_Mutation	C	A	p.G1087*
STAD	TCGA-BR-6452-01	MMRN2	ENST00000372027.5	chr10	88695296:88696882:88702073:88703885:88704018:88704192,	88702074	88703885	88703232	88703232	Nonsense_Mutation	G	A	p.Q437*
STAD	TCGA-BR-6452-01	PDE3B	ENST00000282096.4,ENST00000455098.2	chr11	14854267:14854379:14856527:14856641:14865372:14865572,	14856528	14856641	14856574	14856574	Nonsense_Mutation	T	A	p.Y751*
STAD	TCGA-BR-6452-01	POLD3	ENST00000263681.2,ENST00000528481.1,ENST00000527458.1,ENST00000530511.1	chr11	74305105:74305161:74315736:74315839:74322543:74322583,	74315737	74315839	74315765	74315765	Nonsense_Mutation	C	T	p.R49*
STAD	TCGA-BR-6452-01	STAC3	ENST00000332782.2,ENST00000557176.1,ENST00000554578.1,ENST00000546246.2	chr12	57638097:57638149:57638319:57638405:57638698:57638748,	57638320	57638405	57638384	57638384	Nonsense_Mutation	G	A	p.Q248*
STAD	TCGA-BR-6452-01	OAS3	ENST00000548514.1	chr12	113376350:113376512:113379374:113379657:113382280:113382456,	113379375	113379657	113379524	113379524	Nonsense_Mutation	G	A	p.W109*
STAD	TCGA-BR-6452-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50041999:50042096:50050611:50051175:50054354:50054471,	50050612	50051175	50050783	50050783	Nonsense_Mutation	T	A	p.C171*
STAD	TCGA-BR-6452-01	ATP7B	ENST00000400370.3,ENST00000417240.2,ENST00000242839.4,ENST00000448424.2,ENST00000400366.3	chr13	52518244:52518427:52523797:52523932:52524142:52524297,52520419:52520614:52523797:52523932:52524142:52524297,	52523798	52523932	52523920	52523920	Nonsense_Mutation	G	A	p.Q915*
STAD	TCGA-BR-6452-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561822	32561822	Nonsense_Mutation	G	A	p.W649*
STAD	TCGA-BR-6452-01	EML1	ENST00000262233.6,ENST00000334192.4	chr14	100259749:100259880:100317189:100317372:100331850:100331934,	100317190	100317372	100317246	100317246	Nonsense_Mutation	G	T	p.E42*
STAD	TCGA-BR-6452-01	EML1	ENST00000327921.9,ENST00000262233.6,ENST00000554479.1,ENST00000334192.4,ENST00000554553.1	chr14	100364569:100364639:100367265:100367376:100373974:100374070,	100367266	100367376	100367326	100367326	Nonsense_Mutation	G	T	p.G320*
STAD	TCGA-BR-6452-01	TECPR2	ENST00000558678.1,ENST00000359520.7	chr14	102916896:102916986:102918730:102918964:102931477:102931626,	102918731	102918964	102918744	102918744	Nonsense_Mutation	G	A	p.W1140*
STAD	TCGA-BR-6452-01	PIF1	ENST00000559239.1,ENST00000268043.4,ENST00000333425.6	chr15	65111315:65111422:65112045:65112185:65113180:65113287,	65112046	65112185	65112130	65112130	Nonsense_Mutation	G	A	p.R417*
STAD	TCGA-BR-6452-01	PIF1	ENST00000558380.1	chr15	65111315:65111422:65112045:65112218:65113180:65113287,	65112046	65112218	65112130	65112130	Nonsense_Mutation	G	A	p.R417*
STAD	TCGA-BR-6452-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85658669:85658718:85659214:85659350:85660871:85661063,	85659215	85659350	85659309	85659309	Nonsense_Mutation	G	A	p.W498*
STAD	TCGA-BR-6452-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91491371:91491513:91491883:91492024:91492545:91492673,	91491884	91492024	91491946	91491946	Nonsense_Mutation	T	A	p.Y600*
STAD	TCGA-BR-6452-01	C16orf46	ENST00000299578.5	chr16	81095314:81095743:81097350:81097598:81099797:81099886,	81097351	81097598	81097360	81097360	Nonsense_Mutation	C	T	p.W67*
STAD	TCGA-BR-6452-01	VPS53	ENST00000437048.2,ENST00000291074.5,ENST00000571805.1	chr17	530413:530556:534789:534868:556530:556650,531327:531471:534789:534868:556530:556650,	534790	534868	534801	534801	Nonsense_Mutation	G	A	p.Q226*
STAD	TCGA-BR-6452-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000490210.2,ENST00000589732.1,ENST00000589326.1	chr18	77067189:77067234:77089140:77089302:77090011:77090104,	77089141	77089302	77089273	77089273	Nonsense_Mutation	G	T	p.E636*
STAD	TCGA-BR-6452-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11761030:11761133:11765279:11765438:11767087:11767230,	11765280	11765438	11765302	11765302	Nonsense_Mutation	G	A	p.W1390*
STAD	TCGA-BR-6452-01	IFT172	ENST00000507184.1,ENST00000260570.3	chr2	27682244:27682389:27682575:27682696:27683881:27683960,	27682576	27682696	27682682	27682682	Nonsense_Mutation	G	A	p.R846*
STAD	TCGA-BR-6452-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000488035.1,ENST00000456040.1,ENST00000410054.1,ENST00000264160.4,ENST00000329971.3	chr2	136380223:136380302:136389287:136389347:136389430:136389508,	136389288	136389347	136389319	136389319	Nonsense_Mutation	G	T	p.E177*
STAD	TCGA-BR-6452-01	CLK1	ENST00000432425.1,ENST00000473565.1,ENST00000409403.2	chr2	201725960:201726189:201726424:201726585:201729286:201729379,	201726425	201726585	201726528	201726528	Nonsense_Mutation	C	A	p.G20*
STAD	TCGA-BR-6452-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216272830:216272920:216273020:216273149:216274285:216274462,	216273021	216273149	216273076	216273076	Nonsense_Mutation	A	T	p.Y791*
STAD	TCGA-BR-6452-01	IGFBP5	ENST00000233813.4	chr2	217541528:217541605:217542834:217542954:217543572:217543802,	217542835	217542954	217542921	217542921	Nonsense_Mutation	G	A	p.Q201*
STAD	TCGA-BR-6452-01	GIGYF2	ENST00000463554.1,ENST00000440945.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233613696:233613792:233620932:233621044:233625189:233625301,	233620933	233621044	233620987	233620987	Nonsense_Mutation	G	T	p.G108*
STAD	TCGA-BR-6452-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21314574:21314632:21314715:21314823:21319681:21319726,	21314716	21314823	21314803	21314803	Nonsense_Mutation	A	T	p.K405*
STAD	TCGA-BR-6452-01	TMEM40	ENST00000435218.2	chr3	12780051:12780087:12783952:12784006:12785398:12785488,12780051:12780087:12783952:12784006:12791258:12791339,12780051:12780087:12783952:12784006:12790153:12790291,	12783953	12784006	12783956	12783956	Nonsense_Mutation	C	A	p.G118*
STAD	TCGA-BR-6452-01	CNOT10	ENST00000471003.2,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000416457.1	chr3	32800949:32801063:32804224:32804355:32806173:32806301,32800949:32801063:32804224:32804355:32805946:32805982,	32804225	32804355	32804346	32804346	Nonsense_Mutation	C	T	p.Q611*
STAD	TCGA-BR-6452-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47889270:47889446:47889669:47889876:47889958:47890040,	47889670	47889876	47889772	47889772	Nonsense_Mutation	C	T	p.R797*
STAD	TCGA-BR-6452-01	LNX1	ENST00000263925.7	chr4	54374152:54374394:54439789:54440255:54457554:54457682,	54439790	54440255	54440034	54440034	Nonsense_Mutation	G	A	p.Q46*
STAD	TCGA-BR-6452-01	SNCAIP	ENST00000512146.2,ENST00000512385.1,ENST00000508017.1,ENST00000379538.3,ENST00000515215.2	chr5	121761046:121761226:121767663:121767777:121776323:121776449,121739487:121739560:121767663:121767777:121776323:121776449,	121767664	121767777	121767674	121767674	Nonsense_Mutation	T	A	p.L398*
STAD	TCGA-BR-6452-01	STK38	ENST00000229812.7	chr6	36485493:36485617:36489510:36489594:36492117:36492240,	36489511	36489594	36489556	36489556	Nonsense_Mutation	A	T	p.Y115*
STAD	TCGA-BR-6452-01	UBR2	ENST00000372899.1,ENST00000372901.1,ENST00000372903.2	chr6	42559888:42559967:42561928:42562042:42571325:42571456,	42561929	42562042	42562040	42562040	Nonsense_Mutation	G	T	p.E177*
STAD	TCGA-BR-6452-01	PPIL6	ENST00000518648.1	chr6	109740389:109740446:109748049:109748155:109752359:109752504,	109748050	109748155	109748083	109748083	Nonsense_Mutation	G	A	p.R200*
STAD	TCGA-BR-6452-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000406599.1,ENST00000443427.1,ENST00000338799.5,ENST00000456483.2	chr6	152382125:152382259:152415519:152415703:152419866:152420113,	152415520	152415703	152415579	152415579	Nonsense_Mutation	C	T	p.R477*
STAD	TCGA-BR-6452-01	SLC39A14	ENST00000240095.6,ENST00000381237.1	chr8	22224817:22224921:22262208:22262493:22265822:22265920,	22262209	22262493	22262401	22262401	Nonsense_Mutation	C	T	p.Q60*
STAD	TCGA-BR-6452-01	ASH2L	ENST00000428278.2,ENST00000343823.6,ENST00000521652.1,ENST00000250635.7	chr8	37963895:37963962:37964538:37964684:37967896:37967985,	37964539	37964684	37964605	37964605	Nonsense_Mutation	C	T	p.R108*
STAD	TCGA-BR-6452-01	STAR	ENST00000521236.1	chr8	38003880:38003965:38005717:38005877:38006158:38006272,	38005718	38005877	38005720	38005720	Nonsense_Mutation	G	A	p.Q102*
STAD	TCGA-BR-6452-01	STAR	ENST00000276449.4,ENST00000522050.1	chr8	38003880:38003965:38005717:38005845:38006158:38006272,	38005718	38005845	38005720	38005720	Nonsense_Mutation	G	A	p.Q102*
STAD	TCGA-BR-6452-01	TJP2	ENST00000348208.4,ENST00000265384.7,ENST00000539225.1,ENST00000535702.1,ENST00000453658.2,ENST00000377245.4	chr9	71833172:71833275:71835802:71836412:71840219:71840323,	71835803	71836412	71836211	71836211	Nonsense_Mutation	C	T	p.R251*
STAD	TCGA-BR-6452-01	TLE4	ENST00000376534.4,ENST00000414465.1,ENST00000496853.1	chr9	82227570:82227633:82242288:82242363:82264734:82264773,82227570:82227633:82242288:82242363:82267507:82267709,82227570:82227633:82242288:82242363:82267504:82267544,	82242289	82242363	82242307	82242307	Nonsense_Mutation	C	T	p.Q105*
STAD	TCGA-BR-6452-01	RBM18	ENST00000483428.1,ENST00000417201.3	chr9	125007534:125007620:125009796:125009883:125014125:125014252,	125009797	125009883	125009820	125009820	Nonsense_Mutation	G	A	p.R102*
STAD	TCGA-BR-6452-01	HDAC8	ENST00000373573.3,ENST00000421523.1,ENST00000373571.1,ENST00000436675.1,ENST00000439122.2,ENST00000415409.1,ENST00000373561.4	chrX	71715043:71715118:71787738:71787880:71791906:71791959,71715005:71715118:71787738:71787880:71788603:71788734,	71787739	71787880	71787753	71787753	Nonsense_Mutation	C	T	p.W141*
STAD	TCGA-BR-6452-01	RBM41	ENST00000372487.1,ENST00000372479.3	chrX	106312539:106312632:106331665:106332069:106358581:106358684,	106331666	106332069	106331799	106331799	Nonsense_Mutation	C	T	p.W265*
STAD	TCGA-BR-6452-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123164810:123164975:123171376:123171473:123176418:123176495,	123171377	123171473	123171416	123171416	Nonsense_Mutation	C	T	p.R110*
STAD	TCGA-BR-6452-01	MCF2	ENST00000370573.4,ENST00000414978.1,ENST00000370578.4,ENST00000370576.4,ENST00000519895.1,ENST00000520602.1,ENST00000338585.6	chrX	138711853:138712003:138713553:138713670:138714493:138714613,	138713554	138713670	138713569	138713569	Nonsense_Mutation	C	T	p.W91*
STAD	TCGA-BR-6454-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86311859	86311859	Nonsense_Mutation	C	A	p.G395*
STAD	TCGA-BR-6454-01	EPB41L4B	ENST00000374566.3	chr9	111945008:111945077:111947768:111947885:111954557:111954635,	111947769	111947885	111947780	111947780	Nonsense_Mutation	T	A	p.K803*
STAD	TCGA-BR-6454-01	F8	ENST00000360256.4	chrX	154156845:154159951:154175972:154176182:154182166:154182317,	154175973	154176182	154176146	154176146	Nonsense_Mutation	G	T	p.S647*
STAD	TCGA-BR-6455-01	EPHX4	ENST00000370383.4	chr1	92498117:92498147:92508379:92508537:92511088:92511217,	92508380	92508537	92508453	92508453	Nonsense_Mutation	G	T	p.G131*
STAD	TCGA-BR-6457-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
STAD	TCGA-BR-6564-01	SPDEF	ENST00000544425.1	chr6	34507291:34507339:34508760:34508958:34511796:34511939,34507026:34507173:34508760:34508958:34511796:34512261,	34508761	34508958	34508912	34508912	Nonsense_Mutation	C	T	p.W161*
STAD	TCGA-BR-6565-01	ECD	ENST00000454759.2,ENST00000372979.4,ENST00000484976.2	chr10	74899388:74899495:74906033:74906119:74908033:74908162,	74906034	74906119	74906052	74906052	Nonsense_Mutation	G	C	p.S370*
STAD	TCGA-BR-6565-01	DDX5	ENST00000583212.1,ENST00000225792.5,ENST00000583239.1,ENST00000581230.1,ENST00000578804.1,ENST00000585060.1,ENST00000578190.1,ENST00000577922.1,ENST00000584279.1,ENST00000581697.1,ENST00000579091.1,ENST00000581806.1	chr17	62500100:62500234:62500339:62500436:62500794:62500960,	62500340	62500436	62500356	62500356	Nonsense_Mutation	A	C	p.Y97*
STAD	TCGA-BR-6565-01	TNS1	ENST00000479185.1	chr2	218713606:218713810:218745620:218747134:218749757:218749887,	218745621	218747134	218747129	218747129	Nonsense_Mutation	G	A	p.R293*
STAD	TCGA-BR-6566-01	NETO1	ENST00000299430.2,ENST00000583169.1,ENST00000327305.6	chr18	70451035:70451141:70461351:70461479:70461597:70461639,	70461352	70461479	70461450	70461450	Nonsense_Mutation	C	A	p.G181*
STAD	TCGA-BR-6566-01	MAN1A1	ENST00000368468.3	chr6	119532010:119532095:119569424:119569519:119611847:119611928,119525923:119526047:119569424:119569519:119611847:119611928,	119569425	119569519	119569513	119569513	Nonsense_Mutation	G	A	p.R302*
STAD	TCGA-BR-6566-01	RIBC1	ENST00000375327.3	chrX	53454950:53455032:53455230:53455575:53456801:53456920,	53455231	53455575	53455530	53455530	Nonsense_Mutation	C	T	p.Q167*
STAD	TCGA-BR-6706-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71724063	71724063	Nonsense_Mutation	G	A	p.R1496*
STAD	TCGA-BR-6706-01	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142037631:142037745:142048275:142048457:142051216:142051266,	142048276	142048457	142048335	142048335	Nonsense_Mutation	G	A	p.R1448*
STAD	TCGA-BR-6706-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5617148:5617271:5620204:5620409:5624263:5624718,	5620205	5620409	5620291	5620291	Nonsense_Mutation	G	A	p.R874*
STAD	TCGA-BR-6707-01	RNF217	ENST00000560949.1	chr6	125292646:125292744:125366356:125366590:125379087:125379252,125284453:125284572:125366356:125366590:125379087:125379252,	125366357	125366590	125366470	125366470	Nonsense_Mutation	C	G	p.Y40*
STAD	TCGA-BR-6801-01	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005450	47005450	Nonsense_Mutation	G	C	p.S58*
STAD	TCGA-BR-6801-01	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005450	47005450	Nonsense_Mutation	G	C	p.S58*
STAD	TCGA-BR-6802-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000375420.3,ENST00000434513.1,ENST00000452522.1	chr1	17950881:17950998:17952450:17952543:17953824:17953998,	17952451	17952543	17952451	17952451	Nonsense_Mutation	C	T	p.R440*
STAD	TCGA-BR-6802-01	F13B	ENST00000367412.1	chr1	197008320:197008541:197009651:197009865:197019826:197019975,	197009652	197009865	197009701	197009701	Nonsense_Mutation	G	A	p.Q635*
STAD	TCGA-BR-6802-01	DOCK9	ENST00000339416.2,ENST00000400228.2,ENST00000376460.1	chr13	99449368:99449507:99449642:99449743:99452541:99452732,	99449643	99449743	99449686	99449686	Nonsense_Mutation	G	A	p.R2007*
STAD	TCGA-BR-6852-01	RSF1	ENST00000308488.6,ENST00000480887.1,ENST00000360355.2	chr11	77377274:77378536:77383086:77383275:77386080:77386301,	77383087	77383275	77383228	77383228	Nonsense_Mutation	G	A	p.R1204*
STAD	TCGA-BR-6852-01	DNAJC15	ENST00000379221.2	chr13	43643065:43643139:43652747:43652824:43659903:43659974,	43652748	43652824	43652796	43652796	Nonsense_Mutation	C	T	p.R95*
STAD	TCGA-BR-6852-01	CDAN1	ENST00000356231.3	chr15	43024530:43024606:43025294:43025384:43026135:43026245,	43025295	43025384	43025362	43025362	Nonsense_Mutation	G	A	p.R464*
STAD	TCGA-BR-6852-01	SPATA5L1	ENST00000559860.1,ENST00000305560.6,ENST00000531970.1	chr15	45702570:45702728:45706768:45706978:45707784:45707977,	45706769	45706978	45706832	45706832	Nonsense_Mutation	G	T	p.G500*
STAD	TCGA-BR-6852-01	MTIF2	ENST00000446660.1,ENST00000263629.4,ENST00000417741.1,ENST00000403721.1	chr2	55489451:55489563:55490775:55491001:55494704:55494740,	55490776	55491001	55490842	55490842	Nonsense_Mutation	C	T	p.W51*
STAD	TCGA-BR-6852-01	GIGYF2	ENST00000452341.2,ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233681580:233681742:233684536:233684695:233697566:233697803,	233684537	233684695	233684582	233684582	Nonsense_Mutation	C	T	p.R806*
STAD	TCGA-BR-6852-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262*
STAD	TCGA-BR-6852-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005642	50005642	Nonsense_Mutation	C	T	p.R262*
STAD	TCGA-BR-6852-01	PIK3CA	ENST00000263967.3	chr3	178927973:178928126:178928218:178928353:178935997:178936122,	178928219	178928353	178928348	178928348	Nonsense_Mutation	G	T	p.G512*
STAD	TCGA-BR-6852-01	TSR2	ENST00000375151.4	chrX	54469832:54469924:54470440:54470617:54470848:54471920,	54470441	54470617	54470537	54470537	Nonsense_Mutation	A	T	p.K121*
STAD	TCGA-BR-7196-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097694	27097694	Nonsense_Mutation	C	T	p.Q1095*
STAD	TCGA-BR-7196-01	PANK1	ENST00000307534.4	chr10	91359008:91359262:91371452:91371805:91404356:91405215,	91371453	91371805	91371722	91371722	Nonsense_Mutation	C	A	p.E263*
STAD	TCGA-BR-7197-01	P2RX2	ENST00000389110.3,ENST00000536121.1,ENST00000542301.1,ENST00000348800.5,ENST00000343948.4,ENST00000535910.1	chr12	133196043:133196160:133196264:133196336:133196429:133196505,	133196265	133196336	133196330	133196330	Nonsense_Mutation	C	A	p.C125*
STAD	TCGA-BR-7197-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
STAD	TCGA-BR-7703-01	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31137596	31137596	Nonsense_Mutation	G	A	p.R580*
STAD	TCGA-BR-7703-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R444*
STAD	TCGA-BR-7703-01	NEK8	ENST00000268766.6	chr17	27066101:27066219:27067480:27067631:27067839:27068003,	27067481	27067631	27067543	27067543	Nonsense_Mutation	G	T	p.G494*
STAD	TCGA-BR-7703-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220338	29220338	Nonsense_Mutation	G	A	p.W1489*
STAD	TCGA-BR-7703-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33725910:33726011:33726212:33726344:33734812:33734962,	33726213	33726344	33726216	33726216	Nonsense_Mutation	C	T	p.R333*
STAD	TCGA-BR-7703-01	KRTDAP	ENST00000479340.1,ENST00000338897.3	chr19	35979342:35979387:35979563:35979605:35979703:35979738,	35979564	35979605	35979569	35979569	Nonsense_Mutation	G	A	p.R55*
STAD	TCGA-BR-7703-01	CDCP1	ENST00000425231.2,ENST00000296129.1	chr3	45151964:45152333:45153574:45153937:45159903:45160110,	45153575	45153937	45153659	45153659	Nonsense_Mutation	C	A	p.G191*
STAD	TCGA-BR-7703-01	CNTN3	ENST00000263665.6	chr3	74414716:74414853:74418339:74418524:74419039:74419142,	74418340	74418524	74418379	74418379	Nonsense_Mutation	G	A	p.R303*
STAD	TCGA-BR-7707-01	ESPN	ENST00000434576.1	chr1	6517420:6517432:6520058:6520170:6521239:6521430,	6520059	6520170	6520165	6520165	Nonsense_Mutation	C	T	p.R842*
STAD	TCGA-BR-7707-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113460046	113460046	Nonsense_Mutation	G	A	p.R328*
STAD	TCGA-BR-7707-01	KIF21B	ENST00000461742.2,ENST00000332129.2,ENST00000422435.2,ENST00000360529.5	chr1	200967511:200967703:200968476:200968594:200969010:200969092,	200968477	200968594	200968582	200968582	Nonsense_Mutation	G	A	p.R594*
STAD	TCGA-BR-7707-01	DDX50	ENST00000373585.3,ENST00000466265.1	chr10	70695761:70695835:70696691:70696851:70700815:70700950,	70696692	70696851	70696828	70696828	Nonsense_Mutation	C	T	p.R578*
STAD	TCGA-BR-7707-01	LETMD1	ENST00000548209.1	chr12	51442860:51442968:51449926:51450028:51450132:51450174,51449769:51449804:51449926:51450028:51450132:51450174,51447594:51447643:51449926:51450028:51450132:51450174,	51449927	51450028	51450008	51450008	Nonsense_Mutation	C	T	p.Q248*
STAD	TCGA-BR-7707-01	LETMD1	ENST00000550814.1	chr12	51447594:51447643:51449932:51450028:51450132:51450174,	51449933	51450028	51450008	51450008	Nonsense_Mutation	C	T	p.Q248*
STAD	TCGA-BR-7707-01	HERC1	ENST00000443617.2	chr15	63951934:63952135:63953171:63953224:63953951:63954220,	63953172	63953224	63953190	63953190	Nonsense_Mutation	G	A	p.Q3069*
STAD	TCGA-BR-7707-01	MORF4L1	ENST00000558746.1,ENST00000559619.1,ENST00000558893.1,ENST00000558522.1,ENST00000557961.1,ENST00000426013.2,ENST00000331268.5,ENST00000561171.1,ENST00000559258.1	chr15	79165346:79165560:79170554:79170601:79172853:79172921,79165384:79165399:79170554:79170601:79172853:79172921,	79170555	79170601	79170560	79170560	Nonsense_Mutation	C	T	p.R16*
STAD	TCGA-BR-7707-01	NLRC5	ENST00000262510.6,ENST00000545081.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57095359:57095443:57095529:57095613:57099123:57099210,	57095530	57095613	57095558	57095558	Nonsense_Mutation	C	T	p.Q1367*
STAD	TCGA-BR-7707-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698552	17698552	Nonsense_Mutation	G	T	p.E764*
STAD	TCGA-BR-7707-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	66981193:66981269:66982304:66982465:66985167:66985259,	66982305	66982465	66982372	66982372	Nonsense_Mutation	G	A	p.Q1381*
STAD	TCGA-BR-7707-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67170421:67170535:67170747:67170918:67171546:67171654,	67170748	67170918	67170783	67170783	Nonsense_Mutation	C	A	p.G1005*
STAD	TCGA-BR-7707-01	ATP6V1B1	ENST00000432367.1,ENST00000234396.4	chr2	71189967:71190030:71190291:71190442:71190701:71190784,	71190292	71190442	71190412	71190412	Nonsense_Mutation	C	T	p.Q344*
STAD	TCGA-BR-7707-01	CERKL	ENST00000374967.2	chr2	182414360:182414435:182423292:182423435:182468563:182468806,182414360:182414435:182423292:182423435:182438479:182438611,	182423293	182423435	182423344	182423344	Nonsense_Mutation	G	A	p.R283*
STAD	TCGA-BR-7707-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285159	217285159	Nonsense_Mutation	C	T	p.R334*
STAD	TCGA-BR-7707-01	TTLL4	ENST00000442769.1,ENST00000258398.4,ENST00000457313.1,ENST00000392102.1	chr2	219616476:219616529:219617485:219617696:219617837:219617908,	219617486	219617696	219617636	219617636	Nonsense_Mutation	C	T	p.R1043*
STAD	TCGA-BR-7707-01	TTPAL	ENST00000262605.4,ENST00000372904.3	chr20	43112976:43113170:43115235:43115346:43117903:43118094,	43115236	43115346	43115284	43115284	Nonsense_Mutation	C	T	p.R230*
STAD	TCGA-BR-7707-01	ZBP1	ENST00000343535.4,ENST00000432548.2,ENST00000541799.1	chr20	56190567:56190636:56191299:56191524:56195274:56195534,56190567:56190636:56191299:56191524:56195317:56195450,	56191300	56191524	56191408	56191408	Nonsense_Mutation	G	A	p.R51*
STAD	TCGA-BR-7707-01	TRAIP	ENST00000331456.2,ENST00000482582.1	chr3	49879258:49879372:49879885:49879980:49881233:49881361,	49879886	49879980	49879890	49879890	Nonsense_Mutation	C	A	p.E167*
STAD	TCGA-BR-7715-01	CSNK1A1	ENST00000504676.1,ENST00000261798.5,ENST00000515768.1,ENST00000515435.1,ENST00000503350.2,ENST00000377843.2,ENST00000606826.1,ENST00000606719.1	chr5	148889441:148889516:148891356:148891435:148892632:148892683,	148891357	148891435	148891431	148891431	Nonsense_Mutation	G	A	p.R201*
STAD	TCGA-BR-7716-01	TRPS1	ENST00000519076.1,ENST00000520276.1,ENST00000220888.5,ENST00000395715.3	chr8	116430557:116430680:116599227:116599831:116616099:116616277,	116599228	116599831	116599425	116599425	Nonsense_Mutation	C	A	p.E822*
STAD	TCGA-BR-7717-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217559	26217559	Nonsense_Mutation	C	T	p.R78*
STAD	TCGA-BR-7722-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44912387:44912601:44913956:44914132:44914417:44914545,	44913957	44914132	44913993	44913993	Nonsense_Mutation	G	A	p.Q862*
STAD	TCGA-BR-7851-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101099	27101099	Nonsense_Mutation	C	T	p.R1461*
STAD	TCGA-BR-7851-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375897.3,ENST00000375888.1	chr10	27497174:27497374:27499742:27500010:27504463:27504570,	27499743	27500010	27499857	27499857	Nonsense_Mutation	C	A	p.G364*
STAD	TCGA-BR-7851-01	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720468	3720468	Nonsense_Mutation	G	A	p.R1285*
STAD	TCGA-BR-7851-01	PKNOX2	ENST00000526955.1	chr11	125267769:125267958:125279934:125281761:125298907:125298984,	125279935	125281761	125281699	125281699	Nonsense_Mutation	C	T	p.R292*
STAD	TCGA-BR-7851-01	MFGE8	ENST00000558029.1,ENST00000566497.1,ENST00000268151.7,ENST00000268150.8	chr15	89450425:89450607:89453022:89453154:89456477:89456490,	89453023	89453154	89453092	89453092	Nonsense_Mutation	G	A	p.R46*
STAD	TCGA-BR-7851-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16022736:16022799:16024365:16024583:16029395:16029520,	16024366	16024583	16024504	16024504	Nonsense_Mutation	G	A	p.R572*
STAD	TCGA-BR-7851-01	TNS4	ENST00000254051.6	chr17	38643287:38643712:38644797:38645221:38652238:38652772,	38644798	38645221	38645087	38645087	Nonsense_Mutation	G	A	p.R192*
STAD	TCGA-BR-7851-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610652	10610652	Nonsense_Mutation	G	A	p.Q20*
STAD	TCGA-BR-7851-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203383544:203383775:203384809:203384924:203395516:203395677,	203384810	203384924	203384850	203384850	Nonsense_Mutation	G	A	p.W298*
STAD	TCGA-BR-7851-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	470423:470525:472897:473008:476362:476446,	472898	473008	473005	473005	Nonsense_Mutation	G	A	p.R172*
STAD	TCGA-BR-7851-01	AP1B1	ENST00000415447.1,ENST00000317368.7,ENST00000356015.2,ENST00000432560.2,ENST00000405198.1,ENST00000357586.2,ENST00000421126.1,ENST00000402502.1	chr22	29750638:29750860:29752414:29752605:29754714:29754960,	29752415	29752605	29752476	29752476	Nonsense_Mutation	G	A	p.Q219*
STAD	TCGA-BR-7851-01	IRF2	ENST00000512020.1	chr4	185340622:185340722:185350131:185350224:185395532:185395702,	185350132	185350224	185350182	185350182	Nonsense_Mutation	C	A	p.E13*
STAD	TCGA-BR-7851-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603524	138603524	Nonsense_Mutation	A	T	p.L283*
STAD	TCGA-BR-7851-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000376080.1,ENST00000337006.4,ENST00000491784.1,ENST00000376081.4,ENST00000376083.3	chr9	88284399:88284493:88287464:88287596:88292350:88292497,	88287465	88287596	88287483	88287483	Nonsense_Mutation	G	A	p.R184*
STAD	TCGA-BR-7901-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224813	51224813	Nonsense_Mutation	C	A	p.E979*
STAD	TCGA-BR-7901-01	ENOSF1	ENST00000251101.7,ENST00000581475.1,ENST00000585128.2,ENST00000340116.7,ENST00000584453.1,ENST00000580982.1,ENST00000583973.1,ENST00000584646.1,ENST00000582745.1,ENST00000584259.2,ENST00000319815.6,ENST00000383578.3	chr18	675320:675402:677344:677444:677742:677836,	677345	677444	677406	677406	Nonsense_Mutation	C	A	p.E363*
STAD	TCGA-BR-7901-01	HADH	ENST00000309522.3,ENST00000403312.1,ENST00000507260.1,ENST00000454409.2,ENST00000505878.1,ENST00000603302.1	chr4	108935625:108935744:108940695:108940822:108944629:108944719,	108940696	108940822	108940820	108940820	Nonsense_Mutation	G	T	p.E182*
STAD	TCGA-BR-7957-01	PIGR	ENST00000356495.4	chr1	207110986:207111096:207112463:207112808:207113833:207113929,	207112464	207112808	207112623	207112623	Nonsense_Mutation	T	A	p.K77*
STAD	TCGA-BR-7957-01	ALOX5	ENST00000374391.2,ENST00000542434.1	chr10	45877930:45878129:45891302:45891384:45907638:45907761,	45891303	45891384	45891347	45891347	Nonsense_Mutation	C	T	p.R132*
STAD	TCGA-BR-7957-01	GSDMC	ENST00000522273.1,ENST00000276708.4	chr8	130762676:130762816:130763787:130763814:130764107:130764137,	130763788	130763814	130763792	130763792	Nonsense_Mutation	C	T	p.W313*
STAD	TCGA-BR-7958-01	TOLLIP	ENST00000527886.1,ENST00000263646.7,ENST00000317204.6	chr11	1309865:1310006:1311456:1311639:1330695:1330813,1309865:1310006:1311456:1311639:1316874:1316961,	1311457	1311639	1311591	1311591	Nonsense_Mutation	G	A	p.R78*
STAD	TCGA-BR-7959-01	UBAP2L	ENST00000271877.7,ENST00000465855.1,ENST00000428931.1,ENST00000343815.6,ENST00000433615.1,ENST00000428595.1,ENST00000361546.2,ENST00000475373.1	chr1	154232423:154232505:154233367:154233585:154234067:154234173,	154233368	154233585	154233469	154233469	Nonsense_Mutation	C	T	p.Q894*
STAD	TCGA-BR-7959-01	TGM3	ENST00000381458.5	chr20	2308765:2309011:2312647:2312956:2315761:2315919,	2312648	2312956	2312665	2312665	Nonsense_Mutation	C	T	p.Q451*
STAD	TCGA-BR-8058-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937284	76937284	Nonsense_Mutation	G	C	p.S1155*
STAD	TCGA-BR-8059-01	GLRX3	ENST00000481034.1,ENST00000331244.5,ENST00000368644.1	chr10	131943474:131943583:131958258:131958333:131959059:131959137,	131958259	131958333	131958297	131958297	Nonsense_Mutation	T	A	p.Y80*
STAD	TCGA-BR-8059-01	TALDO1	ENST00000319006.3,ENST00000533796.1,ENST00000530119.1,ENST00000528097.1	chr11	755878:756002:758949:759057:760121:760253,	758950	759057	759008	759008	Nonsense_Mutation	G	T	p.E94*
STAD	TCGA-BR-8059-01	LIG3	ENST00000586058.1,ENST00000378526.4,ENST00000590630.1,ENST00000262327.5	chr17	33323082:33323214:33323592:33323672:33324756:33324844,	33323593	33323672	33323671	33323671	Nonsense_Mutation	A	T	p.R608*
STAD	TCGA-BR-8059-01	OCIAD1	ENST00000512981.1,ENST00000505922.2,ENST00000503016.1,ENST00000512236.1,ENST00000444354.2,ENST00000511102.1,ENST00000510824.1,ENST00000508293.1,ENST00000506801.1,ENST00000396448.2,ENST00000425583.2,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000509246.1,ENST00000381473.3	chr4	48850415:48850463:48851963:48852099:48853822:48853916,	48851964	48852099	48852083	48852083	Nonsense_Mutation	C	T	p.R121*
STAD	TCGA-BR-8059-01	GRB10	ENST00000401949.1,ENST00000439599.1,ENST00000402497.1,ENST00000335866.3,ENST00000398810.2,ENST00000398812.2,ENST00000403097.1,ENST00000407526.1,ENST00000406641.1,ENST00000357271.5	chr7	50737418:50737560:50742132:50742355:50771517:50771605,	50742133	50742355	50742167	50742167	Nonsense_Mutation	G	A	p.Q110*
STAD	TCGA-BR-8059-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000337006.4,ENST00000376083.3	chr9	88193834:88194011:88200377:88200509:88201745:88201875,	88200378	88200509	88200433	88200433	Nonsense_Mutation	C	T	p.W1037*
STAD	TCGA-BR-8077-01	FER	ENST00000281092.4	chr5	108103793:108103939:108133824:108134090:108168470:108168521,	108133825	108134090	108134020	108134020	Nonsense_Mutation	T	A	p.L46*
STAD	TCGA-BR-8077-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135202659	135202660	Nonsense_Mutation	AC	CT	p.C1442*
STAD	TCGA-BR-8078-01	ARMC3	ENST00000484642.1,ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23250867:23251007:23257234:23257418:23270268:23270382,	23257235	23257418	23257331	23257331	Nonsense_Mutation	A	T	p.K277*
STAD	TCGA-BR-8078-01	PLEKHA7	ENST00000355661.3,ENST00000530489.1,ENST00000525781.1,ENST00000531066.1,ENST00000448080.2	chr11	16834659:16834713:16837724:16837811:16838346:16838869,	16837725	16837811	16837793	16837793	Nonsense_Mutation	G	A	p.R629*
STAD	TCGA-BR-8078-01	THSD1	ENST00000258613.4	chr13	52951321:52952924:52960162:52960321:52971366:52972329,	52960163	52960321	52960305	52960305	Nonsense_Mutation	C	T	p.W346*
STAD	TCGA-BR-8078-01	NEDD4L	ENST00000435432.2,ENST00000586263.1,ENST00000256832.7,ENST00000456173.2,ENST00000382850.4	chr18	56001049:56001124:56008269:56008401:56008909:56009029,	56008270	56008401	56008369	56008369	Nonsense_Mutation	C	T	p.R409*
STAD	TCGA-BR-8078-01	ZNF197	ENST00000383744.4,ENST00000344387.4	chr3	44666586:44666635:44670565:44671036:44672553:44672713,	44670566	44671036	44670856	44670856	Nonsense_Mutation	G	A	p.W70*
STAD	TCGA-BR-8078-01	ZNF197	ENST00000383745.2	chr3	44666586:44666635:44670556:44671036:44672553:44672713,	44670557	44671036	44670856	44670856	Nonsense_Mutation	G	A	p.W70*
STAD	TCGA-BR-8078-01	MAN2B2	ENST00000505907.1,ENST00000285599.3,ENST00000504248.1	chr4	6606974:6607056:6610833:6611025:6611524:6611768,	6610834	6611025	6611012	6611012	Nonsense_Mutation	C	T	p.Q665*
STAD	TCGA-BR-8078-01	PAM	ENST00000438793.3,ENST00000509636.1,ENST00000346918.2,ENST00000304400.7,ENST00000379787.4,ENST00000348126.2,ENST00000455264.2	chr5	102202976:102203097:102237059:102237117:102249637:102249725,	102237060	102237117	102237087	102237087	Nonsense_Mutation	C	T	p.R80*
STAD	TCGA-BR-8078-01	SLC17A3	ENST00000397060.4,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25850686:25850848:25850986:25851105:25855371:25855458,	25850987	25851105	25851024	25851024	Nonsense_Mutation	G	T	p.S187*
STAD	TCGA-BR-8078-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939797	137939797	Nonsense_Mutation	G	A	p.R32*
STAD	TCGA-BR-8081-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46439462:46439602:46455023:46455178:46456398:46456587,	46455024	46455178	46455113	46455113	Nonsense_Mutation	G	A	p.R963*
STAD	TCGA-BR-8081-01	CTTN	ENST00000301843.8	chr11	70265851:70265962:70266505:70266616:70269045:70269101,70265851:70265962:70266505:70266616:70267575:70267642,	70266506	70266616	70266595	70266595	Nonsense_Mutation	C	T	p.Q257*
STAD	TCGA-BR-8081-01	TOM1L2	ENST00000581396.1,ENST00000537091.2	chr17	17782940:17783057:17787947:17788082:17796974:17797124,17786018:17786177:17787947:17788082:17796974:17797124,17786018:17786177:17787947:17788082:17801909:17801988,	17787948	17788082	17788064	17788064	Nonsense_Mutation	G	A	p.R129*
STAD	TCGA-BR-8081-01	BRD4	ENST00000360016.5,ENST00000597315.1	chr19	15379823:15379853:15383625:15383944:15443100:15443254,	15383626	15383944	15383721	15383721	Nonsense_Mutation	G	A	p.Q64*
STAD	TCGA-BR-8081-01	PLD3	ENST00000409735.4,ENST00000409587.1,ENST00000409281.1,ENST00000356508.5,ENST00000409419.1	chr19	40876016:40876144:40877579:40877780:40880387:40880527,	40877580	40877780	40877625	40877625	Nonsense_Mutation	C	T	p.R242*
STAD	TCGA-BR-8081-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383560	203383560	Nonsense_Mutation	C	T	p.R213*
STAD	TCGA-BR-8081-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233712230:233712281:233714971:233715119:233721502:233723318,	233714972	233715119	233715062	233715062	Nonsense_Mutation	C	T	p.Q1259*
STAD	TCGA-BR-8081-01	CRLS1	ENST00000452938.1	chr20	5996006:5996136:6012657:6012726:6015109:6015169,	6012658	6012726	6012658	6012658	Nonsense_Mutation	C	T	p.R221*
STAD	TCGA-BR-8081-01	HM13	ENST00000376127.3,ENST00000469126.1,ENST00000335574.5,ENST00000340852.5,ENST00000344042.5,ENST00000398174.3	chr20	30115286:30115385:30132749:30132838:30137866:30137924,30125981:30126162:30132749:30132838:30136831:30136917,30125997:30126064:30132749:30132838:30136831:30136917,	30132750	30132838	30132838	30132838	Nonsense_Mutation	G	T	p.E152*
STAD	TCGA-BR-8081-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5576411:5576499:5577966:5578181:5586349:5586577,	5577967	5578181	5578094	5578094	Nonsense_Mutation	G	A	p.Q1049*
STAD	TCGA-BR-8081-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091558	143091558	Nonsense_Mutation	G	A	p.R1440*
STAD	TCGA-BR-8284-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
STAD	TCGA-BR-8284-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1185*
STAD	TCGA-BR-8286-01	SUSD4	ENST00000483818.1,ENST00000494793.2,ENST00000608996.1,ENST00000344029.6,ENST00000478605.1,ENST00000366878.4	chr1	223441843:223442017:223465780:223465993:223536619:223536679,	223465781	223465993	223465898	223465898	Nonsense_Mutation	G	A	p.R82*
STAD	TCGA-BR-8289-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000282641.2,ENST00000373995.3,ENST00000395489.2	chr10	52580311:52580409:52587890:52588055:52595833:52596072,	52587891	52588055	52588038	52588038	Nonsense_Mutation	C	A	p.G208*
STAD	TCGA-BR-8289-01	TULP1	ENST00000229771.6	chr6	35477603:35477705:35478637:35478787:35479424:35479583,	35478638	35478787	35478785	35478785	Nonsense_Mutation	C	A	p.E118*
STAD	TCGA-BR-8291-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671966	151671966	Nonsense_Mutation	C	T	p.R814*
STAD	TCGA-BR-8295-01	DGUOK	ENST00000348222.1	chr2	74154034:74154179:74173845:74174033:74185272:74185372,74166036:74166149:74173845:74174033:74177711:74177859,74166036:74166149:74173845:74174033:74185272:74185372,	74173846	74174033	74173903	74173903	Nonsense_Mutation	C	T	p.R105*
STAD	TCGA-BR-8296-01	GAS2L3	ENST00000547754.1,ENST00000539410.1,ENST00000266754.5,ENST00000537247.1	chr12	101012226:101012365:101016052:101016160:101017339:101018668,	101016053	101016160	101016095	101016095	Nonsense_Mutation	C	T	p.R231*
STAD	TCGA-BR-8296-01	RAB10	ENST00000473035.1,ENST00000264710.4,ENST00000462003.1	chr2	26321536:26321591:26332636:26332775:26350012:26350102,	26332637	26332775	26332773	26332773	Nonsense_Mutation	G	T	p.E109*
STAD	TCGA-BR-8296-01	PSD4	ENST00000245796.6	chr2	113942620:113942650:113942941:113943017:113943453:113943832,	113942942	113943017	113942985	113942985	Nonsense_Mutation	G	A	p.W406*
STAD	TCGA-BR-8297-01	MYRIP	ENST00000475082.1,ENST00000458292.1,ENST00000302541.6,ENST00000425621.1,ENST00000444716.1	chr3	39942277:39942417:40085540:40085762:40192538:40192675,	40085541	40085762	40085715	40085715	Nonsense_Mutation	C	G	p.Y95*
STAD	TCGA-BR-8297-01	BMP1	ENST00000520970.1	chr8	22059315:22059441:22064815:22065029:22066957:22067208,	22064816	22065029	22064885	22064885	Nonsense_Mutation	C	T	p.R811*
STAD	TCGA-BR-8360-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805494	125805494	Nonsense_Mutation	G	A	p.R79*
STAD	TCGA-BR-8360-01	RNF10	ENST00000540046.1,ENST00000545419.1,ENST00000546262.1,ENST00000413266.2,ENST00000325954.4,ENST00000535395.1	chr12	121001618:121001746:121002874:121002992:121003230:121003330,	121002875	121002992	121002881	121002881	Nonsense_Mutation	C	T	p.R558*
STAD	TCGA-BR-8360-01	SETD6	ENST00000219315.4	chr16	58549450:58549468:58549694:58550001:58550105:58550121,	58549695	58550001	58549965	58549965	Nonsense_Mutation	C	T	p.Q100*
STAD	TCGA-BR-8360-01	SETD6	ENST00000310682.2,ENST00000418480.1,ENST00000470003.1,ENST00000427443.1,ENST00000492050.1,ENST00000394266.4	chr16	58549694:58549784:58549856:58550001:58550105:58550121,	58549857	58550001	58549965	58549965	Nonsense_Mutation	C	T	p.Q100*
STAD	TCGA-BR-8360-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
STAD	TCGA-BR-8360-01	IGFL4	ENST00000601672.1	chr19	46543580:46543674:46543775:46543826:46544309:46544368,	46543776	46543826	46543796	46543796	Nonsense_Mutation	G	C	p.S17*
STAD	TCGA-BR-8361-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Nonsense_Mutation	A	T	p.K124*
STAD	TCGA-BR-8361-01	ITPR2	ENST00000381340.3	chr12	26839413:26839565:26848538:26848583:26864105:26864201,	26848539	26848583	26848568	26848568	Nonsense_Mutation	G	A	p.R323*
STAD	TCGA-BR-8361-01	CLN3	ENST00000566083.1,ENST00000565316.1,ENST00000565688.1,ENST00000359984.7,ENST00000567963.1,ENST00000569430.1,ENST00000563874.1,ENST00000360019.2,ENST00000395653.4,ENST00000333496.9,ENST00000564574.1,ENST00000568452.1,ENST00000566824.1,ENST00000354630.5,ENST00000561689.1,ENST00000535392.1,ENST00000357857.9	chr16	28495326:28495439:28497667:28497811:28497898:28497971,	28497668	28497811	28497797	28497797	Nonsense_Mutation	C	T	p.W183*
STAD	TCGA-BR-8361-01	CCBE1	ENST00000589116.1,ENST00000439986.4	chr18	57106774:57106810:57106908:57107048:57115214:57115335,	57106909	57107048	57106992	57106992	Nonsense_Mutation	G	A	p.Q278*
STAD	TCGA-BR-8361-01	ZNF554	ENST00000317243.5,ENST00000591265.1	chr19	2823037:2823110:2827614:2827741:2832300:2832492,	2827615	2827741	2827741	2827741	Nonsense_Mutation	G	T	p.E85*
STAD	TCGA-BR-8361-01	ANKZF1	ENST00000461731.1,ENST00000465550.1,ENST00000410034.3,ENST00000409849.1,ENST00000323348.5,ENST00000467884.1,ENST00000477479.1,ENST00000463792.1,ENST00000496346.1	chr2	220098007:220098155:220098436:220098665:220098854:220099010,	220098437	220098665	220098560	220098560	Nonsense_Mutation	C	T	p.Q315*
STAD	TCGA-BR-8361-01	POLK	ENST00000509126.1,ENST00000515295.1,ENST00000380481.3,ENST00000241436.4,ENST00000511527.1,ENST00000510815.2,ENST00000514141.1,ENST00000505975.1,ENST00000503479.2,ENST00000504026.1	chr5	74872604:74872758:74877033:74877273:74879117:74879242,	74877034	74877273	74877075	74877075	Nonsense_Mutation	C	T	p.R246*
STAD	TCGA-BR-8361-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87031449:87031618:87032450:87032597:87035603:87035810,	87032451	87032597	87032525	87032525	Nonsense_Mutation	G	A	p.R1194*
STAD	TCGA-BR-8361-01	CALCR	ENST00000360249.4,ENST00000394441.1,ENST00000359558.2,ENST00000426151.1,ENST00000421592.1	chr7	93067521:93067582:93072915:93073069:93090132:93090259,	93072916	93073069	93072952	93072952	Nonsense_Mutation	T	A	p.K290*
STAD	TCGA-BR-8363-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123845448	123845448	Nonsense_Mutation	C	T	p.Q1145*
STAD	TCGA-BR-8363-01	BRAP	ENST00000327551.6	chr12	112119440:112119639:112120949:112121111:112123391:112123524,	112120950	112121111	112120995	112120995	Nonsense_Mutation	G	A	p.R67*
STAD	TCGA-BR-8363-01	MRPS11	ENST00000559323.1,ENST00000353598.6,ENST00000325844.4,ENST00000560708.1,ENST00000557974.1,ENST00000558406.1	chr15	89018402:89018470:89020219:89020285:89021102:89021135,	89020220	89020285	89020277	89020277	Nonsense_Mutation	G	T	p.G157*
STAD	TCGA-BR-8363-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57125043:57125180:57126538:57126754:57128574:57128689,	57126539	57126754	57126658	57126658	Nonsense_Mutation	G	A	p.R471*
STAD	TCGA-BR-8363-01	HDLBP	ENST00000427487.1	chr2	242179225:242179235:242179315:242179579:242181874:242181955,	242179316	242179579	242179357	242179357	Nonsense_Mutation	G	A	p.R784*
STAD	TCGA-BR-8363-01	HDLBP	ENST00000373292.4,ENST00000479169.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000459788.1,ENST00000310931.4	chr2	242179225:242179235:242179315:242179537:242181874:242181955,	242179316	242179537	242179357	242179357	Nonsense_Mutation	G	A	p.R784*
STAD	TCGA-BR-8363-01	ECT2	ENST00000441497.2,ENST00000437296.1,ENST00000540509.1,ENST00000392692.3,ENST00000417960.1,ENST00000232458.5,ENST00000427830.1	chr3	172523520:172523659:172525559:172525714:172533393:172533501,	172525560	172525714	172525679	172525679	Nonsense_Mutation	C	T	p.R758*
STAD	TCGA-BR-8363-01	EIF2B5	ENST00000491144.1	chr3	183857867:183857945:183858205:183858518:183859712:183859831,183857936:183858009:183858205:183858518:183859712:183859831,	183858206	183858518	183858392	183858392	Nonsense_Mutation	C	T	p.R344*
STAD	TCGA-BR-8363-01	EIF2B5	ENST00000479833.1	chr3	183857867:183857945:183858205:183858403:183859712:183859831,	183858206	183858403	183858392	183858392	Nonsense_Mutation	C	T	p.R344*
STAD	TCGA-BR-8363-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274836	114274836	Nonsense_Mutation	C	T	p.Q1688*
STAD	TCGA-BR-8363-01	TSPAN13	ENST00000466195.1,ENST00000262067.4	chr7	16816702:16816747:16817422:16817536:16818627:16818701,	16817423	16817536	16817465	16817465	Nonsense_Mutation	C	T	p.R119*
STAD	TCGA-BR-8363-01	PNPLA4	ENST00000381042.4,ENST00000537427.1,ENST00000444736.1	chrX	7866803:7868858:7870029:7870182:7880068:7880134,	7870030	7870182	7870101	7870101	Nonsense_Mutation	G	A	p.R187*
STAD	TCGA-BR-8365-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102566729:102566821:102572327:102572380:102603979:102604112,	102572328	102572380	102572363	102572363	Nonsense_Mutation	G	A	p.Q248*
STAD	TCGA-BR-8366-01	INVS	ENST00000541287.1,ENST00000262456.2,ENST00000262457.2	chr9	103014564:103014720:103015188:103015418:103027103:103027210,	103015189	103015418	103015323	103015323	Nonsense_Mutation	A	T	p.R457*
STAD	TCGA-BR-8368-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236195700:236195952:236201403:236201553:236205209:236205592,	236201404	236201553	236201453	236201453	Nonsense_Mutation	G	T	p.C412*
STAD	TCGA-BR-8368-01	FBN1	ENST00000537463.2	chr15	48905206:48905289:48936802:48937147:48937771:48937906,	48936803	48937147	48936960	48936960	Nonsense_Mutation	G	A	p.R3*
STAD	TCGA-BR-8368-01	AARS	ENST00000261772.8,ENST00000564359.1,ENST00000565361.2	chr16	70292938:70293089:70294946:70295060:70296248:70296264,	70294947	70295060	70295027	70295027	Nonsense_Mutation	G	A	p.R569*
STAD	TCGA-BR-8368-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67303002	67303002	Nonsense_Mutation	G	A	p.R218*
STAD	TCGA-BR-8368-01	CDH6	ENST00000514738.1,ENST00000508132.1,ENST00000265071.2	chr5	31294305:31294363:31297395:31297515:31299570:31299738,	31297396	31297515	31297469	31297469	Nonsense_Mutation	C	A	p.Y199*
STAD	TCGA-BR-8368-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835591	82835591	Nonsense_Mutation	G	T	p.G2257*
STAD	TCGA-BR-8368-01	SLC22A23	ENST00000380302.4,ENST00000467177.1,ENST00000406686.3,ENST00000485307.1,ENST00000436008.2,ENST00000490273.1	chr6	3298324:3298452:3324067:3324236:3410421:3410576,	3324068	3324236	3324124	3324124	Nonsense_Mutation	C	T	p.W342*
STAD	TCGA-BR-8368-01	CDK20	ENST00000325303.8	chr9	90584710:90584834:90585482:90585545:90585690:90585812,	90585483	90585545	90585538	90585538	Nonsense_Mutation	G	A	p.R170*
STAD	TCGA-BR-8368-01	AMMECR1	ENST00000372057.1	chrX	109459745:109459860:109507716:109507827:109560826:109560984,	109507717	109507827	109507781	109507781	Nonsense_Mutation	C	A	p.G174*
STAD	TCGA-BR-8369-01	LDB2	ENST00000508918.1,ENST00000503178.2,ENST00000512345.1,ENST00000503153.1,ENST00000503829.1,ENST00000506732.1,ENST00000504886.1,ENST00000502640.1,ENST00000441778.2,ENST00000507464.1,ENST00000304523.5,ENST00000515064.1	chr4	16587598:16587628:16590332:16590455:16597325:16597498,	16590333	16590455	16590368	16590368	Nonsense_Mutation	G	A	p.R166*
STAD	TCGA-BR-8369-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24903114:24903218:24904960:24905084:24905688:24905856,	24904961	24905084	24905012	24905012	Nonsense_Mutation	G	A	p.R208*
STAD	TCGA-BR-8372-01	RELB	ENST00000221452.8,ENST00000505236.1,ENST00000540120.1	chr19	45528586:45528678:45528863:45528995:45532145:45532250,	45528864	45528995	45528941	45528941	Nonsense_Mutation	C	T	p.Q278*
STAD	TCGA-BR-8372-01	SULT2A1	ENST00000222002.3	chr19	48382292:48382387:48385340:48385467:48386833:48387042,	48385341	48385467	48385411	48385411	Nonsense_Mutation	C	T	p.W134*
STAD	TCGA-BR-8372-01	MRPL2	ENST00000388752.3	chr6	43021972:43022224:43023634:43023745:43023818:43023934,43023282:43023356:43023634:43023745:43023818:43023934,	43023635	43023745	43023644	43023644	Nonsense_Mutation	G	A	p.R208*
STAD	TCGA-BR-8372-01	INTS8	ENST00000520315.1,ENST00000523731.1,ENST00000523206.1,ENST00000447247.1,ENST00000520526.1	chr8	95871738:95871860:95877733:95877918:95878385:95878419,	95877734	95877918	95877854	95877854	Nonsense_Mutation	C	T	p.R733*
STAD	TCGA-BR-8372-01	INTS8	ENST00000343161.4,ENST00000524333.1	chr8	95871738:95871860:95877733:95877928:95878385:95878419,	95877734	95877928	95877854	95877854	Nonsense_Mutation	C	T	p.R733*
STAD	TCGA-BR-8380-01	PER3	ENST00000361923.2,ENST00000377532.3	chr1	7863110:7863213:7863751:7863908:7868952:7869058,	7863752	7863908	7863904	7863904	Nonsense_Mutation	C	T	p.R377*
STAD	TCGA-BR-8382-01	SAMD4A	ENST00000392067.3,ENST00000357634.3,ENST00000554335.1	chr14	55168779:55169298:55203741:55204005:55215532:55215642,	55203742	55204005	55203855	55203855	Nonsense_Mutation	C	T	p.R276*
STAD	TCGA-BR-8382-01	CHRNA3	ENST00000559658.1	chr15	78886271:78886353:78888881:78889074:78893594:78894606,	78888882	78889074	78888987	78888987	Nonsense_Mutation	C	A	p.G493*
STAD	TCGA-BR-8382-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000263960.2	chr2	198318216:198318388:198327262:198327455:198334793:198334895,198324655:198324805:198327262:198327455:198334793:198334895,	198327263	198327455	198327368	198327368	Nonsense_Mutation	T	G	p.Y120*
STAD	TCGA-BR-8382-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33330813	33330813	Nonsense_Mutation	G	A	p.Q1083*
STAD	TCGA-BR-8382-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33331122	33331122	Nonsense_Mutation	G	A	p.Q980*
STAD	TCGA-BR-8382-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171809039:171809131:171821566:171821643:171833280:171833356,	171821567	171821643	171821626	171821626	Nonsense_Mutation	G	A	p.R84*
STAD	TCGA-BR-8382-01	HNRNPH1	ENST00000519958.1	chr5	179045045:179045061:179045145:179045324:179047892:179047960,179044817:179044912:179045145:179045324:179047892:179047960,	179045146	179045324	179045188	179045188	Nonsense_Mutation	C	A	p.G225*
STAD	TCGA-BR-8382-01	DDX31	ENST00000372159.3,ENST00000438527.3	chr9	135487473:135487642:135493716:135493828:135501050:135501132,	135493717	135493828	135493777	135493777	Nonsense_Mutation	G	A	p.Q694*
STAD	TCGA-BR-8484-01	ACVR2A	ENST00000404590.1	chr2	148602184:148602275:148602642:148602776:148653869:148654077,	148602643	148602776	148602741	148602741	Nonsense_Mutation	T	A	p.L7*
STAD	TCGA-BR-8484-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138713938	138713938	Nonsense_Mutation	G	A	p.Q857*
STAD	TCGA-BR-8485-01	UPK1A	ENST00000379013.2,ENST00000222275.2	chr19	36159355:36159556:36164133:36164208:36164339:36164447,	36164134	36164208	36164136	36164136	Nonsense_Mutation	C	A	p.Y96*
STAD	TCGA-BR-8487-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21155639:21155765:21167348:21167521:21175907:21176023,	21167349	21167521	21167512	21167512	Nonsense_Mutation	G	A	p.Q1244*
STAD	TCGA-BR-8487-01	WNT4	ENST00000542383.1,ENST00000290167.6	chr1	22446520:22447010:22447703:22447846:22447937:22448069,	22447704	22447846	22447841	22447841	Nonsense_Mutation	G	A	p.Q151*
STAD	TCGA-BR-8487-01	CA14	ENST00000369111.4	chr1	150235202:150235269:150235440:150235598:150235697:150235818,	150235441	150235598	150235500	150235500	Nonsense_Mutation	C	T	p.Q208*
STAD	TCGA-BR-8487-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448745	155448745	Nonsense_Mutation	G	A	p.R1306*
STAD	TCGA-BR-8487-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
STAD	TCGA-BR-8487-01	CHST15	ENST00000435907.1,ENST00000346248.5	chr10	125771848:125771996:125780771:125780928:125798030:125798135,	125780772	125780928	125780849	125780849	Nonsense_Mutation	G	A	p.Q424*
STAD	TCGA-BR-8487-01	CSTF3	ENST00000323959.4	chr11	33107440:33107535:33108533:33108687:33112077:33112273,	33108534	33108687	33108546	33108546	Nonsense_Mutation	G	A	p.R595*
STAD	TCGA-BR-8487-01	ERC1	ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1100463:1100488:1136913:1137738:1192329:1192746,1100432:1100653:1136913:1137738:1192329:1192746,	1136914	1137738	1137661	1137661	Nonsense_Mutation	C	T	p.R198*
STAD	TCGA-BR-8487-01	ERC1	ENST00000592048.1	chr12	1100428:1100653:1137504:1137738:1192329:1192746,	1137505	1137738	1137661	1137661	Nonsense_Mutation	C	T	p.R198*
STAD	TCGA-BR-8487-01	GOLGA3	ENST00000204726.3,ENST00000456883.2,ENST00000450791.2	chr12	133353219:133353342:133353543:133353676:133354251:133354391,	133353544	133353676	133353594	133353594	Nonsense_Mutation	G	A	p.Q1269*
STAD	TCGA-BR-8487-01	TSSK4	ENST00000287913.6,ENST00000556621.1	chr14	24675714:24675929:24676351:24676715:24677169:24677454,	24676352	24676715	24676542	24676542	Nonsense_Mutation	C	T	p.R211*
STAD	TCGA-BR-8487-01	TTBK2	ENST00000267890.6,ENST00000567840.1	chr15	43109229:43109295:43120125:43120230:43122135:43122276,	43120126	43120230	43120161	43120161	Nonsense_Mutation	G	A	p.R168*
STAD	TCGA-BR-8487-01	TRAF7	ENST00000326181.6,ENST00000564067.1	chr16	2221572:2221606:2222191:2222375:2222465:2222590,	2222192	2222375	2222338	2222338	Nonsense_Mutation	C	T	p.R208*
STAD	TCGA-BR-8487-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27518167:27518477:27519860:27519976:27523069:27523222,	27519861	27519976	27519890	27519890	Nonsense_Mutation	G	A	p.R405*
STAD	TCGA-BR-8487-01	ABCC3	ENST00000510891.1,ENST00000513745.1,ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48752991:48753136:48753243:48753451:48753638:48753650,	48753244	48753451	48753397	48753397	Nonsense_Mutation	C	T	p.Q1005*
STAD	TCGA-BR-8487-01	UBXN6	ENST00000590466.1	chr19	4445472:4445620:4446045:4446194:4446279:4446410,4445472:4445620:4446045:4446194:4446496:4446617,	4446046	4446194	4446124	4446124	Nonsense_Mutation	C	T	p.W374*
STAD	TCGA-BR-8487-01	UBXN6	ENST00000587324.1,ENST00000587009.1	chr19	4445472:4445620:4446045:4446410:4446496:4446617,	4446046	4446410	4446124	4446124	Nonsense_Mutation	C	T	p.W374*
STAD	TCGA-BR-8487-01	DNMT3B	ENST00000348286.2,ENST00000353855.2,ENST00000443239.3,ENST00000201963.3,ENST00000456297.2,ENST00000344505.4	chr20	31379406:31379514:31380431:31380576:31383214:31383340,	31380432	31380576	31380444	31380444	Nonsense_Mutation	C	T	p.R312*
STAD	TCGA-BR-8487-01	ITSN1	ENST00000399367.3,ENST00000381291.4,ENST00000487427.1,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35191544:35191627:35195790:35195957:35199121:35199167,	35195791	35195957	35195847	35195847	Nonsense_Mutation	C	T	p.Q1025*
STAD	TCGA-BR-8487-01	PPM1F	ENST00000397495.4	chr22	22293903:22294052:22300214:22300480:22307163:22307193,	22300215	22300480	22300339	22300339	Nonsense_Mutation	G	A	p.Q28*
STAD	TCGA-BR-8487-01	ITIH1	ENST00000540715.1,ENST00000273283.2,ENST00000537050.1	chr3	52820310:52820450:52820960:52821115:52821203:52821218,	52820961	52821115	52821010	52821010	Nonsense_Mutation	C	T	p.Q595*
STAD	TCGA-BR-8487-01	SLC25A26	ENST00000536651.1,ENST00000464350.2	chr3	66420952:66421026:66428113:66428494:66428833:66428926,	66428114	66428494	66428187	66428187	Nonsense_Mutation	C	T	p.R261*
STAD	TCGA-BR-8487-01	IGFBP7	ENST00000295666.4,ENST00000512512.1	chr4	57896938:57897502:57898591:57898718:57899360:57899477,	57898592	57898718	57898658	57898658	Nonsense_Mutation	C	A	p.G255*
STAD	TCGA-BR-8487-01	MDN1	ENST00000428876.1,ENST00000369393.3	chr6	90394594:90394704:90395545:90395692:90396620:90396742,	90395546	90395692	90395561	90395561	Nonsense_Mutation	G	A	p.Q3902*
STAD	TCGA-BR-8487-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143093049	143093049	Nonsense_Mutation	G	A	p.R943*
STAD	TCGA-BR-8487-01	PARP12	ENST00000263549.3,ENST00000488726.1	chr7	139734034:139734131:139741443:139741639:139746683:139746807,139737514:139737656:139741443:139741639:139746683:139746807,	139741444	139741639	139741630	139741630	Nonsense_Mutation	G	T	p.C332*
STAD	TCGA-BR-8487-01	TNC	ENST00000535648.1,ENST00000350763.4,ENST00000345230.3,ENST00000346706.3	chr9	117848142:117849552:117852840:117853433:117880260:117880478,	117852841	117853433	117852871	117852871	Nonsense_Mutation	C	A	p.G143*
STAD	TCGA-BR-8487-01	TFE3	ENST00000315869.7,ENST00000493583.1,ENST00000487451.1	chrX	48888911:48889059:48890979:48891055:48891240:48891297,	48890980	48891055	48891041	48891041	Nonsense_Mutation	G	A	p.R359*
STAD	TCGA-BR-8487-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77276441:77276576:77284746:77284941:77286897:77287080,	77284747	77284941	77284891	77284891	Nonsense_Mutation	C	T	p.Q1021*
STAD	TCGA-BR-8588-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383565	203383565	Nonsense_Mutation	T	A	p.Y214*
STAD	TCGA-BR-8589-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000568255.1,ENST00000570161.1,ENST00000389936.4	chr15	42052520:42052727:42053936:42054048:42054326:42054395,	42053937	42054048	42053967	42053967	Nonsense_Mutation	C	T	p.Q2477*
STAD	TCGA-BR-8589-01	ART3	ENST00000355810.4,ENST00000341029.5,ENST00000513494.1,ENST00000349321.3	chr4	76997033:76997111:77002976:77003688:77018796:77018829,	77002977	77003688	77003337	77003337	Nonsense_Mutation	A	T	p.R144*
STAD	TCGA-BR-8590-01	KIR2DL4	ENST00000346587.4,ENST00000345540.5	chr19	55317405:55317699:55320287:55320338:55324579:55324683,55317405:55317699:55320287:55320338:55325144:55325197,	55320288	55320338	55320312	55320312	Nonsense_Mutation	C	G	p.S227*
STAD	TCGA-BR-8590-01	SLC17A3	ENST00000509714.1,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25855371:25855458:25861851:25861939:25862460:25862672,	25861852	25861939	25861882	25861882	Nonsense_Mutation	G	A	p.R121*
STAD	TCGA-BR-8590-01	ZMYND19	ENST00000298585.2	chr9	140476530:140477138:140477434:140477615:140481418:140481559,	140477435	140477615	140477600	140477600	Nonsense_Mutation	A	C	p.Y125*
STAD	TCGA-BR-8591-01	C1orf174	ENST00000361605.3	chr1	3807132:3807621:3809446:3809560:3816735:3816811,	3809447	3809560	3809521	3809521	Nonsense_Mutation	G	A	p.R19*
STAD	TCGA-BR-8591-01	RAB34	ENST00000415040.2	chr17	27042658:27042723:27042817:27042919:27043920:27044012,	27042818	27042919	27042858	27042858	Nonsense_Mutation	C	A	p.E92*
STAD	TCGA-BR-8591-01	ARHGAP28	ENST00000532996.1,ENST00000314319.3,ENST00000579245.1,ENST00000531294.1,ENST00000400091.2,ENST00000418986.1,ENST00000383472.4,ENST00000262227.3,ENST00000419673.2	chr18	6873682:6873774:6876129:6876207:6882135:6882298,	6876130	6876207	6876205	6876205	Nonsense_Mutation	A	T	p.K253*
STAD	TCGA-BR-8591-01	VRK3	ENST00000596121.1,ENST00000316763.3,ENST00000424804.2,ENST00000593919.1,ENST00000594948.1,ENST00000594092.1,ENST00000596445.1,ENST00000599538.1,ENST00000597215.1,ENST00000601324.1	chr19	50511034:50511083:50512492:50512642:50519280:50519420,	50512493	50512642	50512565	50512565	Nonsense_Mutation	G	A	p.R73*
STAD	TCGA-BR-8591-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120836068:120836157:120844746:120844816:120847922:120848092,	120844747	120844816	120844814	120844814	Nonsense_Mutation	C	T	p.Q291*
STAD	TCGA-BR-8591-01	LSS	ENST00000356396.4,ENST00000457828.2,ENST00000397728.3,ENST00000522411.1	chr21	47633651:47633749:47635093:47635212:47635598:47635707,	47635094	47635212	47635156	47635156	Nonsense_Mutation	G	A	p.Q317*
STAD	TCGA-BR-8591-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091558	143091558	Nonsense_Mutation	G	A	p.R1440*
STAD	TCGA-BR-8591-01	ZNF277	ENST00000457808.1,ENST00000361946.4,ENST00000361822.3,ENST00000450657.1	chr7	111936283:111936366:111958236:111958328:111967771:111967882,	111958237	111958328	111958267	111958267	Nonsense_Mutation	C	T	p.R166*
STAD	TCGA-BR-8591-01	HABP4	ENST00000375249.4	chr9	99212486:99212910:99220660:99220823:99227618:99227780,	99220661	99220823	99220764	99220764	Nonsense_Mutation	C	A	p.Y151*
STAD	TCGA-BR-8591-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000375695.2	chrX	51641209:51641289:51641380:51641423:51641676:51641724,	51641381	51641423	51641391	51641391	Nonsense_Mutation	G	A	p.W583*
STAD	TCGA-BR-8676-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832059	24832059	Nonsense_Mutation	C	A	p.S1287*
STAD	TCGA-BR-8678-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579406	Nonsense_Mutation	G	C	p.S94*
STAD	TCGA-BR-8679-01	SOX30	ENST00000265007.6,ENST00000519442.1	chr5	157065237:157065730:157073644:157073824:157075664:157075904,	157073645	157073824	157073789	157073789	Nonsense_Mutation	G	A	p.R415*
STAD	TCGA-BR-8679-01	GDAP1	ENST00000220822.7	chr8	75262678:75262813:75263508:75263701:75272371:75272483,	75263509	75263701	75263617	75263617	Nonsense_Mutation	G	T	p.E76*
STAD	TCGA-BR-8680-01	TAS1R1	ENST00000333172.6	chr1	6631000:6631275:6634690:6635452:6636474:6636687,	6634691	6635452	6634952	6634952	Nonsense_Mutation	G	T	p.E254*
STAD	TCGA-BR-8680-01	PER3	ENST00000361923.2,ENST00000377532.3	chr1	7863110:7863213:7863751:7863908:7868952:7869058,	7863752	7863908	7863904	7863904	Nonsense_Mutation	C	T	p.R377*
STAD	TCGA-BR-8680-01	CDCA8	ENST00000327331.2,ENST00000373055.1	chr1	38171112:38171239:38172649:38172736:38173993:38175385,	38172650	38172736	38172656	38172656	Nonsense_Mutation	C	T	p.R240*
STAD	TCGA-BR-8680-01	CC2D1B	ENST00000460261.1	chr1	52822055:52822114:52822672:52822846:52823197:52823370,	52822673	52822846	52822738	52822738	Nonsense_Mutation	G	A	p.R611*
STAD	TCGA-BR-8680-01	CC2D1B	ENST00000438831.1,ENST00000491136.2,ENST00000371586.2,ENST00000450942.2,ENST00000284376.3,ENST00000438021.1	chr1	52822055:52822114:52822672:52822798:52823197:52823370,	52822673	52822798	52822738	52822738	Nonsense_Mutation	G	A	p.R611*
STAD	TCGA-BR-8680-01	MYSM1	ENST00000401044.3,ENST00000472487.1	chr1	59150824:59150923:59154709:59154788:59155897:59155921,	59154710	59154788	59154730	59154730	Nonsense_Mutation	C	A	p.E127*
STAD	TCGA-BR-8680-01	DOCK7	ENST00000340370.5,ENST00000251157.5,ENST00000454575.1	chr1	62979141:62979277:62979386:62979569:62993821:62993976,	62979387	62979569	62979530	62979530	Nonsense_Mutation	G	A	p.R1326*
STAD	TCGA-BR-8680-01	C1orf141	ENST00000371007.2,ENST00000544837.1,ENST00000448166.2,ENST00000371006.1	chr1	67559241:67559287:67560917:67561104:67561934:67562004,	67560918	67561104	67561067	67561067	Nonsense_Mutation	C	A	p.E152*
STAD	TCGA-BR-8680-01	IFI44	ENST00000472152.1	chr1	79121046:79121196:79124996:79125168:79129449:79129582,	79124997	79125168	79125147	79125147	Nonsense_Mutation	C	T	p.R331*
STAD	TCGA-BR-8680-01	CDC7	ENST00000428239.1,ENST00000234626.6,ENST00000430031.2	chr1	91981350:91981433:91985686:91985836:91989597:91990056,	91985687	91985836	91985809	91985809	Nonsense_Mutation	G	T	p.E435*
STAD	TCGA-BR-8680-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93711661:93711761:93712394:93712511:93720027:93720171,	93712395	93712511	93712497	93712497	Nonsense_Mutation	G	T	p.E1180*
STAD	TCGA-BR-8680-01	DPYD	ENST00000370192.3	chr1	97700407:97700550:97770814:97770934:97771732:97771853,	97770815	97770934	97770839	97770839	Nonsense_Mutation	G	A	p.R759*
STAD	TCGA-BR-8680-01	ANP32E	ENST00000436748.2	chr1	150202905:150203028:150204114:150204264:150208080:150208177,150201404:150201570:150204114:150204264:150208080:150208177,	150204115	150204264	150204192	150204192	Nonsense_Mutation	C	A	p.E43*
STAD	TCGA-BR-8680-01	CD1B	ENST00000368168.3	chr1	158299324:158299438:158299641:158299920:158300585:158300815,	158299642	158299920	158299693	158299693	Nonsense_Mutation	G	A	p.R186*
STAD	TCGA-BR-8680-01	ANKRD45	ENST00000333279.2	chr1	173596203:173596298:173615984:173616152:173628229:173628572,	173615985	173616152	173616051	173616051	Nonsense_Mutation	C	A	p.E144*
STAD	TCGA-BR-8680-01	PRG4	ENST00000367483.4,ENST00000445192.2,ENST00000367484.3	chr1	186270723:186270843:186273925:186274054:186275449:186275610,186273239:186273389:186273925:186274054:186275449:186275610,	186273926	186274054	186274033	186274033	Nonsense_Mutation	G	T	p.E193*
STAD	TCGA-BR-8680-01	RD3	ENST00000367002.4	chr1	211649863:211652669:211654461:211654771:211665109:211665373,	211654462	211654771	211654646	211654646	Nonsense_Mutation	G	A	p.R38*
STAD	TCGA-BR-8680-01	SPATA17	ENST00000492747.2,ENST00000366933.4	chr1	217915320:217915440:217947675:217947879:217955515:217955650,	217947676	217947879	217947760	217947760	Nonsense_Mutation	C	T	p.R202*
STAD	TCGA-BR-8680-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944236	235944236	Nonsense_Mutation	C	A	p.E1715*
STAD	TCGA-BR-8680-01	EFCAB2	ENST00000473686.1,ENST00000391837.3,ENST00000425550.1,ENST00000487845.1,ENST00000551317.1,ENST00000366521.3,ENST00000366522.2,ENST00000447569.2,ENST00000497591.1,ENST00000549220.1,ENST00000366523.1	chr1	245222687:245222760:245245384:245245464:245246743:245246786,	245245385	245245464	245245415	245245415	Nonsense_Mutation	C	T	p.R208*
STAD	TCGA-BR-8680-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000455749.1,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000374875.1,ENST00000265371.4	chr10	33542955:33543122:33545243:33545399:33552573:33552632,	33545244	33545399	33545355	33545355	Nonsense_Mutation	G	A	p.R235*
STAD	TCGA-BR-8680-01	CREM	ENST00000495960.1	chr10	35437328:35437419:35467799:35467914:35468061:35468204,	35467800	35467914	35467886	35467886	Nonsense_Mutation	G	T	p.E80*
STAD	TCGA-BR-8680-01	CREM	ENST00000482633.1,ENST00000489388.1,ENST00000461968.1	chr10	35437328:35437419:35467816:35467914:35468061:35468204,35416089:35416121:35467816:35467914:35468061:35468204,	35467817	35467914	35467886	35467886	Nonsense_Mutation	G	T	p.E80*
STAD	TCGA-BR-8680-01	MMS19	ENST00000434538.1,ENST00000327277.7,ENST00000438925.2,ENST00000355839.6,ENST00000370782.2,ENST00000415383.1,ENST00000327238.10	chr10	99222339:99222439:99223614:99223770:99225561:99225711,	99223615	99223770	99223673	99223673	Nonsense_Mutation	A	C	p.Y618*
STAD	TCGA-BR-8680-01	SORCS3	ENST00000369701.3	chr10	106865154:106865273:106899154:106899244:106907374:106907554,	106899155	106899244	106899200	106899200	Nonsense_Mutation	G	T	p.E420*
STAD	TCGA-BR-8680-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115377213:115377312:115380362:115380467:115381627:115381939,	115380363	115380467	115380377	115380377	Nonsense_Mutation	C	A	p.E954*
STAD	TCGA-BR-8680-01	TACC2	ENST00000369001.1,ENST00000369000.1,ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000369004.3,ENST00000515273.1,ENST00000260733.3,ENST00000515603.1,ENST00000513429.1,ENST00000358010.1,ENST00000368999.1,ENST00000465600.1,ENST00000360561.3,ENST00000368997.3	chr10	124008564:124008671:124009058:124009179:124013505:124013852,	124009059	124009179	124009084	124009084	Nonsense_Mutation	C	T	p.R2896*
STAD	TCGA-BR-8680-01	GLRX3	ENST00000481034.1,ENST00000368644.1	chr10	131934662:131934776:131943474:131943583:131958258:131958333,	131943475	131943583	131943557	131943557	Nonsense_Mutation	G	T	p.E59*
STAD	TCGA-BR-8680-01	CYP2R1	ENST00000334636.5,ENST00000530609.1	chr11	14900659:14900753:14901681:14902314:14907321:14907387,14900659:14900989:14901681:14902314:14907321:14907387,	14901682	14902314	14901790	14901790	Nonsense_Mutation	C	A	p.E298*
STAD	TCGA-BR-8680-01	CYP2R1	ENST00000532378.1	chr11	14900659:14900989:14901681:14901905:14907321:14907387,	14901682	14901905	14901790	14901790	Nonsense_Mutation	C	A	p.E298*
STAD	TCGA-BR-8680-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000311027.5,ENST00000395344.3,ENST00000402192.2	chr11	47346021:47346128:47348288:47348358:47350208:47350255,	47348289	47348358	47348331	47348331	Nonsense_Mutation	C	T	p.R1589*
STAD	TCGA-BR-8680-01	DPF2	ENST00000530993.1,ENST00000528416.1,ENST00000532264.1,ENST00000252268.4	chr11	65108436:65108544:65108869:65109033:65111215:65111308,	65108870	65109033	65109022	65109022	Nonsense_Mutation	C	T	p.R152*
STAD	TCGA-BR-8680-01	MRPL21	ENST00000565125.1,ENST00000362034.2,ENST00000541279.1,ENST00000567045.1,ENST00000450904.2	chr11	68660870:68660923:68663982:68664146:68665394:68665480,	68663983	68664146	68663994	68663994	Nonsense_Mutation	G	A	p.R129*
STAD	TCGA-BR-8680-01	MRPL21	ENST00000541265.1	chr11	68660870:68660923:68663936:68664146:68665394:68665480,	68663937	68664146	68663994	68663994	Nonsense_Mutation	G	A	p.R129*
STAD	TCGA-BR-8680-01	MRPL21	ENST00000544567.1	chr11	68660870:68660923:68663982:68664306:68665394:68665480,	68663983	68664306	68663994	68663994	Nonsense_Mutation	G	A	p.R129*
STAD	TCGA-BR-8680-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412131	77412131	Nonsense_Mutation	C	A	p.E715*
STAD	TCGA-BR-8680-01	TMEM126A	ENST00000532180.1,ENST00000304511.2	chr11	85359064:85359133:85365106:85365300:85366637:85366752,85361355:85361385:85365106:85365300:85366637:85366752,	85365107	85365300	85365183	85365183	Nonsense_Mutation	C	T	p.R55*
STAD	TCGA-BR-8680-01	TMEM126A	ENST00000531366.1	chr11	85361355:85361385:85365106:85365278:85366637:85366752,	85365107	85365278	85365183	85365183	Nonsense_Mutation	C	T	p.R55*
STAD	TCGA-BR-8680-01	TMEM126A	ENST00000525353.1	chr11	85361355:85361385:85365084:85365278:85366637:85366752,	85365085	85365278	85365183	85365183	Nonsense_Mutation	C	T	p.R55*
STAD	TCGA-BR-8680-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107968362:107968481:107969132:107969256:107974916:107975629,	107969133	107969256	107969212	107969212	Nonsense_Mutation	G	T	p.E702*
STAD	TCGA-BR-8680-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108202605:108202764:108203488:108203627:108204612:108204635,	108203489	108203627	108203492	108203492	Nonsense_Mutation	C	T	p.R2598*
STAD	TCGA-BR-8680-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	427271:427627:430160:430275:431582:431733,	430161	430275	430229	430229	Nonsense_Mutation	C	A	p.E825*
STAD	TCGA-BR-8680-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62895352:62895478:62902065:62902260:62918294:62918419,	62902066	62902260	62902072	62902072	Nonsense_Mutation	G	T	p.E266*
STAD	TCGA-BR-8680-01	HSP90B1	ENST00000299767.5,ENST00000548462.1,ENST00000540297.2	chr12	104326058:104326196:104326603:104326720:104327733:104327768,	104326604	104326720	104326616	104326616	Nonsense_Mutation	G	T	p.E103*
STAD	TCGA-BR-8680-01	DAO	ENST00000547166.1,ENST00000228476.3	chr12	109281225:109281340:109283244:109283321:109283983:109284049,	109283245	109283321	109283296	109283296	Nonsense_Mutation	G	T	p.E121*
STAD	TCGA-BR-8680-01	RFC5	ENST00000543153.1,ENST00000392542.2,ENST00000229043.3,ENST00000454402.2	chr12	118465766:118465835:118467575:118467630:118468986:118469241,	118467576	118467630	118467596	118467596	Nonsense_Mutation	C	T	p.R298*
STAD	TCGA-BR-8680-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000606321.1,ENST00000302349.5	chr12	123648496:123648637:123649848:123650024:123651201:123651336,	123649849	123650024	123649915	123649915	Nonsense_Mutation	C	A	p.E749*
STAD	TCGA-BR-8680-01	CPB2	ENST00000439329.3,ENST00000181383.4	chr13	46648007:46648112:46652934:46653036:46656575:46656684,	46652935	46653036	46653021	46653021	Nonsense_Mutation	C	A	p.E134*
STAD	TCGA-BR-8680-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103094	61103094	Nonsense_Mutation	C	T	p.R486*
STAD	TCGA-BR-8680-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21881071:21881155:21882459:21882577:21883096:21883152,	21882460	21882577	21882509	21882509	Nonsense_Mutation	A	C	p.L419*
STAD	TCGA-BR-8680-01	FBXO33	ENST00000298097.7	chr14	39868769:39868991:39870379:39871065:39871604:39871715,	39870380	39871065	39870866	39870866	Nonsense_Mutation	G	A	p.R304*
STAD	TCGA-BR-8680-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831856	58831856	Nonsense_Mutation	C	T	p.R1017*
STAD	TCGA-BR-8680-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000557060.1,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64540705:64540854:64542662:64542818:64545183:64545324,	64542663	64542818	64542723	64542723	Nonsense_Mutation	C	T	p.R3643*
STAD	TCGA-BR-8680-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087177	89087177	Nonsense_Mutation	C	A	p.E1766*
STAD	TCGA-BR-8680-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102676053	102676053	Nonsense_Mutation	C	T	p.R516*
STAD	TCGA-BR-8680-01	BUB1B	ENST00000287598.6,ENST00000412359.3	chr15	40502310:40502411:40504699:40504849:40505532:40505675,	40504700	40504849	40504751	40504751	Nonsense_Mutation	G	T	p.E813*
STAD	TCGA-BR-8680-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021440	42021440	Nonsense_Mutation	C	T	p.R1246*
STAD	TCGA-BR-8680-01	TPM1	ENST00000558264.1,ENST00000559831.1	chr15	63353067:63353138:63353911:63353987:63354413:63354476,63353396:63353472:63353911:63353987:63354413:63354476,	63353912	63353987	63353934	63353934	Nonsense_Mutation	G	T	p.E196*
STAD	TCGA-BR-8680-01	NPTN	ENST00000351217.6,ENST00000564551.1,ENST00000563691.1,ENST00000287226.8,ENST00000545878.1,ENST00000565282.1,ENST00000562924.1,ENST00000345330.4	chr15	73862658:73862764:73866002:73866136:73925465:73925562,73862658:73862764:73866002:73866136:73879864:73879959,	73866003	73866136	73866030	73866030	Nonsense_Mutation	C	T	p.W271*
STAD	TCGA-BR-8680-01	IREB2	ENST00000258886.8,ENST00000558570.1	chr15	78768529:78768701:78770638:78770739:78775659:78775776,	78770639	78770739	78770698	78770698	Nonsense_Mutation	C	T	p.R419*
STAD	TCGA-BR-8680-01	SEC11A	ENST00000558196.1,ENST00000560266.1,ENST00000560409.1,ENST00000455959.3,ENST00000268220.7,ENST00000558134.1	chr15	85213955:85214013:85230855:85231005:85234765:85234875,85223977:85224063:85230855:85231005:85234765:85234875,	85230856	85231005	85230953	85230953	Nonsense_Mutation	G	A	p.R72*
STAD	TCGA-BR-8680-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000389398.5	chr16	22145688:22145759:22149680:22149833:22151474:22151565,	22149681	22149833	22149750	22149750	Nonsense_Mutation	G	T	p.E737*
STAD	TCGA-BR-8680-01	NAE1	ENST00000290810.3,ENST00000394074.2,ENST00000379463.2,ENST00000566663.1,ENST00000359087.4	chr16	66842891:66842978:66844276:66844316:66844599:66844602,	66844277	66844316	66844292	66844292	Nonsense_Mutation	C	A	p.E379*
STAD	TCGA-BR-8680-01	CENPN	ENST00000299572.5	chr16	81051362:81051439:81053704:81053881:81056359:81056490,	81053705	81053881	81053750	81053750	Nonsense_Mutation	C	T	p.R134*
STAD	TCGA-BR-8680-01	RAB34	ENST00000484161.1,ENST00000395242.2,ENST00000395243.3,ENST00000583538.1,ENST00000395245.3,ENST00000301043.6,ENST00000447716.1,ENST00000430132.2,ENST00000436730.3,ENST00000415040.2,ENST00000450529.1	chr17	27041690:27041728:27041810:27041918:27042049:27042140,	27041811	27041918	27041904	27041904	Nonsense_Mutation	C	A	p.E207*
STAD	TCGA-BR-8680-01	GDPD1	ENST00000581140.1,ENST00000578026.1,ENST00000581276.1,ENST00000284116.4	chr17	57335111:57335201:57344401:57344535:57348296:57348356,	57344402	57344535	57344492	57344492	Nonsense_Mutation	C	T	p.R223*
STAD	TCGA-BR-8680-01	SPIRE1	ENST00000309836.5,ENST00000410092.3,ENST00000440472.2,ENST00000464481.1,ENST00000453447.2,ENST00000383356.2	chr18	12464866:12464957:12479697:12479870:12493070:12493148,	12479698	12479870	12479831	12479831	Nonsense_Mutation	G	T	p.S424*
STAD	TCGA-BR-8680-01	CD22	ENST00000270311.6,ENST00000598815.1,ENST00000419549.2,ENST00000085219.5,ENST00000536635.2,ENST00000594250.1,ENST00000341773.6,ENST00000544992.2,ENST00000601769.1	chr19	35832003:35832041:35832245:35832509:35832604:35832627,	35832246	35832509	35832350	35832350	Nonsense_Mutation	G	T	p.E538*
STAD	TCGA-BR-8680-01	ZFP82	ENST00000392161.3	chr19	36882861:36885012:36896481:36896574:36898788:36898915,	36896482	36896574	36896524	36896524	Nonsense_Mutation	C	A	p.E63*
STAD	TCGA-BR-8680-01	ZNF766	ENST00000599581.1	chr19	52772845:52772884:52785363:52785490:52786537:52786571,	52785364	52785490	52785394	52785394	Nonsense_Mutation	G	T	p.E17*
STAD	TCGA-BR-8680-01	SLC5A6	ENST00000310574.3,ENST00000412471.1,ENST00000408041.1,ENST00000488743.2	chr2	27429350:27429402:27429744:27429810:27430125:27430658,	27429745	27429810	27429798	27429798	Nonsense_Mutation	G	A	p.R136*
STAD	TCGA-BR-8680-01	YIPF4	ENST00000437765.1	chr2	32503299:32503303:32515551:32515705:32523302:32523380,	32515552	32515705	32515614	32515614	Nonsense_Mutation	G	T	p.E48*
STAD	TCGA-BR-8680-01	BIRC6	ENST00000421745.2	chr2	32743883:32744013:32749954:32750086:32750530:32750695,	32749955	32750086	32750029	32750029	Nonsense_Mutation	G	T	p.E3900*
STAD	TCGA-BR-8680-01	ACYP2	ENST00000394666.3,ENST00000607452.1	chr2	54362589:54362606:54365775:54365885:54531824:54531996,	54365776	54365885	54365782	54365782	Nonsense_Mutation	G	T	p.E28*
STAD	TCGA-BR-8680-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778948	64778948	Nonsense_Mutation	G	T	p.E114*
STAD	TCGA-BR-8680-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71653942	71653942	Nonsense_Mutation	T	G	p.L1648*
STAD	TCGA-BR-8680-01	ALMS1	ENST00000423048.1	chr2	73682288:73682422:73716760:73717285:73746901:73747143,	73716761	73717285	73717091	73717091	Nonsense_Mutation	C	T	p.R2670*
STAD	TCGA-BR-8680-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717091	73717091	Nonsense_Mutation	C	T	p.R2670*
STAD	TCGA-BR-8680-01	NPAS2	ENST00000486017.1,ENST00000427413.1,ENST00000448812.1,ENST00000542504.1,ENST00000335681.5	chr2	101541607:101541756:101549371:101549463:101554214:101554304,	101549372	101549463	101549440	101549440	Nonsense_Mutation	G	T	p.E84*
STAD	TCGA-BR-8680-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086173	109086173	Nonsense_Mutation	G	T	p.E130*
STAD	TCGA-BR-8680-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088540	109088540	Nonsense_Mutation	C	T	p.R919*
STAD	TCGA-BR-8680-01	IL1B	ENST00000477398.1,ENST00000496280.1	chr2	113593142:113593194:113593759:113593821:113594284:113594356,	113593760	113593821	113593779	113593779	Nonsense_Mutation	C	A	p.E10*
STAD	TCGA-BR-8680-01	CLASP1	ENST00000409078.3,ENST00000474065.1,ENST00000263710.4,ENST00000541377.1,ENST00000397587.3,ENST00000455322.2	chr2	122260742:122260810:122273240:122273338:122283420:122283496,	122273241	122273338	122273335	122273335	Nonsense_Mutation	G	A	p.R184*
STAD	TCGA-BR-8680-01	NEB	ENST00000413693.1,ENST00000509223.2	chr2	152350674:152350767:152352789:152352882:152359306:152359399,152350674:152350767:152352789:152352882:152353454:152353547,152350674:152350767:152352789:152352882:152359862:152359943,	152352790	152352882	152352870	152352870	Nonsense_Mutation	C	A	p.E6280*
STAD	TCGA-BR-8680-01	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170591738	170591738	Nonsense_Mutation	G	T	p.E72*
STAD	TCGA-BR-8680-01	GORASP2	ENST00000452526.2,ENST00000471559.1,ENST00000442798.1,ENST00000234160.4	chr2	171807837:171807968:171811159:171811292:171812945:171813024,	171811160	171811292	171811194	171811194	Nonsense_Mutation	C	T	p.R201*
STAD	TCGA-BR-8680-01	BCS1L	ENST00000392110.2,ENST00000439945.1,ENST00000412366.1,ENST00000392111.2,ENST00000431802.1,ENST00000359273.3,ENST00000430322.1,ENST00000392109.1,ENST00000456050.1	chr2	219524457:219524466:219526128:219526268:219526481:219526639,219525661:219526030:219526128:219526268:219526481:219526639,	219526129	219526268	219526163	219526163	Nonsense_Mutation	C	T	p.R119*
STAD	TCGA-BR-8680-01	EPHA4	ENST00000541600.1,ENST00000281821.2,ENST00000409854.1,ENST00000409938.1,ENST00000434266.1	chr2	222428998:222429114:222433437:222433505:222436877:222437001,	222433438	222433505	222433473	222433473	Nonsense_Mutation	C	A	p.E42*
STAD	TCGA-BR-8680-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951091	235951091	Nonsense_Mutation	C	T	p.R560*
STAD	TCGA-BR-8680-01	ARPP21	ENST00000187397.4	chr3	35732416:35732497:35748465:35748574:35756930:35756968,35732416:35732497:35748465:35748574:35750460:35750562,	35748466	35748574	35748563	35748563	Nonsense_Mutation	G	T	p.E262*
STAD	TCGA-BR-8680-01	ARIH2	ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000465217.1,ENST00000452385.1	chr3	49004638:49004708:49005966:49006088:49008027:49008077,	49005967	49006088	49006041	49006041	Nonsense_Mutation	G	T	p.E205*
STAD	TCGA-BR-8680-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58129199:58129340:58131647:58131776:58132546:58132720,	58131648	58131776	58131773	58131773	Nonsense_Mutation	G	T	p.E1851*
STAD	TCGA-BR-8680-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684173	77684173	Nonsense_Mutation	C	T	p.R1305*
STAD	TCGA-BR-8680-01	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148925149:148925404:148926997:148927171:148927953:148928166,	148926998	148927171	148927157	148927157	Nonsense_Mutation	C	A	p.E208*
STAD	TCGA-BR-8680-01	IGF2BP2	ENST00000461957.1,ENST00000382199.2,ENST00000346192.3,ENST00000457616.2,ENST00000466476.1	chr3	185414399:185414451:185416086:185416135:185540940:185541001,	185416087	185416135	185416116	185416116	Nonsense_Mutation	G	A	p.R87*
STAD	TCGA-BR-8680-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3182241:3182378:3184080:3184197:3188323:3188446,	3184081	3184197	3184144	3184144	Nonsense_Mutation	C	T	p.R1607*
STAD	TCGA-BR-8680-01	ZCCHC4	ENST00000302874.4,ENST00000507760.1	chr4	25314416:25314558:25315667:25315786:25316939:25317022,	25315668	25315786	25315706	25315706	Nonsense_Mutation	G	T	p.E56*
STAD	TCGA-BR-8680-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257880	158257880	Nonsense_Mutation	G	T	p.G609*
STAD	TCGA-BR-8680-01	IL7R	ENST00000303115.3	chr5	35871157:35871315:35873581:35873750:35875613:35875623,35871157:35871315:35873581:35873750:35874550:35874644,	35873582	35873750	35873660	35873660	Nonsense_Mutation	C	T	p.R206*
STAD	TCGA-BR-8680-01	IL31RA	ENST00000354961.4,ENST00000396836.2,ENST00000447346.2,ENST00000396834.1,ENST00000359040.5	chr5	55155336:55155427:55164618:55164736:55168097:55168279,	55164619	55164736	55164656	55164656	Nonsense_Mutation	C	A	p.Y64*
STAD	TCGA-BR-8680-01	GFM2	ENST00000427854.2,ENST00000296805.3,ENST00000509430.1,ENST00000345239.2	chr5	74046403:74046492:74047192:74047318:74054673:74054771,	74047193	74047318	74047274	74047274	Nonsense_Mutation	G	A	p.R117*
STAD	TCGA-BR-8680-01	AGGF1	ENST00000312916.7	chr5	76342171:76342502:76343985:76344097:76344760:76344812,	76343986	76344097	76344002	76344002	Nonsense_Mutation	G	A	p.W406*
STAD	TCGA-BR-8680-01	CAST	ENST00000504465.1,ENST00000506811.1,ENST00000309190.5,ENST00000338252.3,ENST00000512620.1,ENST00000505143.1,ENST00000325674.7,ENST00000511097.2,ENST00000508608.1,ENST00000510156.1,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000395813.1,ENST00000508197.1,ENST00000511049.1,ENST00000510756.1,ENST00000509903.1	chr5	96063192:96063234:96064856:96064913:96065315:96065395,	96064857	96064913	96064902	96064902	Nonsense_Mutation	G	T	p.E59*
STAD	TCGA-BR-8680-01	LCP2	ENST00000046794.5,ENST00000521416.1	chr5	169677733:169677889:169679437:169679515:169680122:169680217,	169679438	169679515	169679511	169679511	Nonsense_Mutation	G	T	p.S417*
STAD	TCGA-BR-8680-01	WRNIP1	ENST00000380769.4,ENST00000380764.1,ENST00000380773.4	chr6	2769006:2769116:2770353:2770595:2779496:2779726,	2770354	2770595	2770510	2770510	Nonsense_Mutation	C	T	p.R391*
STAD	TCGA-BR-8680-01	WRNIP1	ENST00000380771.4	chr6	2769006:2769116:2770428:2770595:2779496:2779726,	2770429	2770595	2770510	2770510	Nonsense_Mutation	C	T	p.R391*
STAD	TCGA-BR-8680-01	GMNN	ENST00000230056.3,ENST00000378054.2,ENST00000356509.3	chr6	24784314:24784397:24784671:24784782:24785865:24785935,	24784672	24784782	24784681	24784681	Nonsense_Mutation	G	T	p.E123*
STAD	TCGA-BR-8680-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43164382:43164600:43166346:43166593:43167003:43167109,	43166347	43166593	43166427	43166427	Nonsense_Mutation	G	T	p.E962*
STAD	TCGA-BR-8680-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51524753	51524753	Nonsense_Mutation	C	A	p.E3391*
STAD	TCGA-BR-8680-01	AKIRIN2	ENST00000257787.5	chr6	88385577:88385649:88387535:88387685:88391337:88391481,	88387536	88387685	88387650	88387650	Nonsense_Mutation	C	A	p.E139*
STAD	TCGA-BR-8680-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150816	128150816	Nonsense_Mutation	C	A	p.E172*
STAD	TCGA-BR-8680-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17379187	17379187	Nonsense_Mutation	G	T	p.E580*
STAD	TCGA-BR-8680-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409076.2	chr7	17833387:17833916:17836449:17836562:17838312:17838381,	17836450	17836562	17836501	17836501	Nonsense_Mutation	G	A	p.R870*
STAD	TCGA-BR-8680-01	IGFBP1	ENST00000275525.3	chr7	45930152:45930316:45931530:45931659:45932558:45933252,	45931531	45931659	45931546	45931546	Nonsense_Mutation	G	T	p.E179*
STAD	TCGA-BR-8680-01	ZNF92	ENST00000357512.2	chr7	64838793:64838913:64852814:64852941:64863253:64865994,	64852815	64852941	64852845	64852845	Nonsense_Mutation	G	T	p.E12*
STAD	TCGA-BR-8680-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468223	86468223	Nonsense_Mutation	C	T	p.R465*
STAD	TCGA-BR-8680-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111185	105111185	Nonsense_Mutation	G	A	p.R450*
STAD	TCGA-BR-8680-01	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000434450.1,ENST00000324698.6	chr7	123104886:123105063:123109267:123109438:123119848:123120024,	123109268	123109438	123109360	123109360	Nonsense_Mutation	C	A	p.E497*
STAD	TCGA-BR-8680-01	CPA2	ENST00000222481.4,ENST00000416698.1,ENST00000480781.1,ENST00000487259.1	chr7	129909508:129909643:129910532:129910628:129912915:129913017,	129910533	129910628	129910557	129910557	Nonsense_Mutation	G	T	p.E105*
STAD	TCGA-BR-8680-01	DPP6	ENST00000332007.3,ENST00000377770.3,ENST00000427557.1,ENST00000404039.1	chr7	154680981:154681054:154681166:154681240:154684043:154684248,	154681167	154681240	154681193	154681193	Nonsense_Mutation	G	T	p.E802*
STAD	TCGA-BR-8680-01	TUSC3	ENST00000506802.1,ENST00000511783.2,ENST00000382020.4,ENST00000503731.1	chr8	15531271:15531345:15588174:15588238:15601046:15601121,	15588175	15588238	15588214	15588214	Nonsense_Mutation	G	T	p.E280*
STAD	TCGA-BR-8680-01	CA8	ENST00000317995.4	chr8	61099905:61102544:61121308:61121478:61135207:61135320,	61121309	61121478	61121466	61121466	Nonsense_Mutation	G	A	p.R251*
STAD	TCGA-BR-8680-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71086990:71087094:71126137:71126310:71128894:71128999,	71126138	71126310	71126174	71126174	Nonsense_Mutation	C	A	p.E75*
STAD	TCGA-BR-8680-01	LY96	ENST00000518893.1	chr8	74917030:74917120:74922235:74922364:74939023:74939076,74903660:74903789:74922235:74922364:74939023:74939076,	74922236	74922364	74922307	74922307	Nonsense_Mutation	G	T	p.E92*
STAD	TCGA-BR-8680-01	PTDSS1	ENST00000518776.1,ENST00000517309.1	chr8	97296336:97296381:97299249:97299374:97307325:97307484,	97299250	97299374	97299345	97299345	Nonsense_Mutation	C	T	p.R138*
STAD	TCGA-BR-8680-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100533126:100533238:100568677:100568881:100587885:100588012,	100568678	100568881	100568703	100568703	Nonsense_Mutation	C	T	p.R1616*
STAD	TCGA-BR-8680-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631976	116631976	Nonsense_Mutation	C	A	p.E104*
STAD	TCGA-BR-8680-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000520917.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000518509.1,ENST00000340930.3,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141745349:141745554:141749116:141749206:141753328:141753429,	141749117	141749206	141749153	141749153	Nonsense_Mutation	G	A	p.R597*
STAD	TCGA-BR-8680-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962834:72962954:72965029:72965209:72965291:72965387,	72965030	72965209	72965072	72965072	Nonsense_Mutation	C	T	p.R978*
STAD	TCGA-BR-8680-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377203	77377203	Nonsense_Mutation	C	A	p.E1462*
STAD	TCGA-BR-8680-01	RBM18	ENST00000483428.1,ENST00000417201.3	chr9	125007534:125007620:125009796:125009883:125014125:125014252,	125009797	125009883	125009820	125009820	Nonsense_Mutation	G	A	p.R102*
STAD	TCGA-BR-8680-01	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49079387:49079595:49081222:49081448:49082370:49082531,	49081223	49081448	49081339	49081339	Nonsense_Mutation	G	T	p.C598*
STAD	TCGA-BR-8682-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
STAD	TCGA-BR-8682-01	GRIA1	ENST00000448073.4,ENST00000340592.5,ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153078426:153078633:153085256:153085627:153143993:153144192,	153085257	153085627	153085359	153085359	Nonsense_Mutation	A	T	p.K519*
STAD	TCGA-BR-8683-01	PLXNC1	ENST00000258526.4	chr12	94580148:94580249:94603365:94603480:94613791:94613939,	94603366	94603480	94603463	94603463	Nonsense_Mutation	C	T	p.R513*
STAD	TCGA-BR-8683-01	TNFRSF11B	ENST00000297350.4	chr8	119938748:119938957:119940976:119941168:119945169:119945539,	119940977	119941168	119941043	119941043	Nonsense_Mutation	T	A	p.K176*
STAD	TCGA-BR-8683-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98231219:98231435:98232094:98232213:98238315:98238441,	98232095	98232213	98232138	98232138	Nonsense_Mutation	G	A	p.R602*
STAD	TCGA-BR-8690-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103297354:103297566:103297740:103298009:103298587:103298845,	103297741	103298009	103297970	103297970	Nonsense_Mutation	A	C	p.L1752*
STAD	TCGA-BR-A452-01	STAP2	ENST00000597593.1,ENST00000594605.1,ENST00000599736.1,ENST00000602007.1,ENST00000600324.1	chr19	4325212:4325305:4325392:4325542:4326938:4326949,	4325393	4325542	4325405	4325405	Nonsense_Mutation	C	A	p.E323*
STAD	TCGA-BR-A4CR-01	PIK3CD	ENST00000536656.1,ENST00000377346.4,ENST00000361110.2	chr1	9783182:9783350:9784026:9784150:9784333:9784463,	9784027	9784150	9784136	9784136	Nonsense_Mutation	C	T	p.R902*
STAD	TCGA-BR-A4CS-01	ENKUR	ENST00000331161.4,ENST00000496261.2	chr10	25273138:25273305:25273664:25273834:25279391:25279538,	25273665	25273834	25273693	25273693	Nonsense_Mutation	T	A	p.K246*
STAD	TCGA-BR-A4CS-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58132546:58132720:58133932:58134091:58134375:58134579,	58133933	58134091	58134046	58134046	Nonsense_Mutation	C	T	p.R1948*
STAD	TCGA-BR-A4CS-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131388518:131388608:131404718:131404802:131415385:131415460,	131404719	131404802	131404727	131404727	Nonsense_Mutation	G	A	p.R195*
STAD	TCGA-BR-A4IY-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61834049	61834049	Nonsense_Mutation	C	A	p.E415*
STAD	TCGA-BR-A4J1-01	IGSF9	ENST00000361509.3,ENST00000368094.1	chr1	159900939:159901051:159901242:159901393:159901601:159901718,	159901243	159901393	159901336	159901336	Nonsense_Mutation	G	A	p.R474*
STAD	TCGA-BR-A4J1-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103082	61103082	Nonsense_Mutation	C	T	p.Q482*
STAD	TCGA-BR-A4J1-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208570	55208570	Nonsense_Mutation	C	T	p.R250*
STAD	TCGA-BR-A4J2-01	ARID4A	ENST00000395168.3,ENST00000445108.1,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58790202:58790335:58794954:58795034:58796245:58796322,	58794955	58795034	58795012	58795012	Nonsense_Mutation	C	T	p.R214*
STAD	TCGA-BR-A4J4-01	PHYH	ENST00000263038.4,ENST00000479604.1,ENST00000453759.2,ENST00000396913.2,ENST00000396920.3	chr10	13333830:13333912:13336427:13336596:13337495:13337606,	13336428	13336596	13336443	13336443	Nonsense_Mutation	G	T	p.Y133*
STAD	TCGA-BR-A4PD-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579414	7579414	Nonsense_Mutation	C	T	p.W91*
STAD	TCGA-BR-A4PD-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103939	168103939	Nonsense_Mutation	A	T	p.R2013*
STAD	TCGA-BR-A4QL-01	EPHA8	ENST00000166244.3	chr1	22924643:22924705:22925330:22925540:22927153:22927303,	22925331	22925540	22925427	22925427	Nonsense_Mutation	C	T	p.R759*
STAD	TCGA-BR-A4QL-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236614	33236614	Nonsense_Mutation	A	T	p.K553*
STAD	TCGA-BR-A4QL-01	PPP3CB	ENST00000545874.1,ENST00000394829.2,ENST00000394828.2,ENST00000342558.3,ENST00000360663.5	chr10	75234676:75234788:75238256:75238381:75239074:75239275,	75238257	75238381	75238307	75238307	Nonsense_Mutation	G	A	p.R121*
STAD	TCGA-BR-A4QL-01	CTBP2	ENST00000411419.2,ENST00000531469.1,ENST00000337195.5	chr10	126692032:126692061:126727565:126727724:126822080:126822181,126692032:126692061:126727565:126727724:126799558:126799662,	126727566	126727724	126727587	126727587	Nonsense_Mutation	G	A	p.R13*
STAD	TCGA-BR-A4QL-01	PPP1R1A	ENST00000547826.2	chr12	54974727:54974834:54975759:54975915:54976515:54976579,54974727:54974834:54975759:54975915:54976994:54977026,	54975760	54975915	54975883	54975883	Nonsense_Mutation	G	A	p.Q94*
STAD	TCGA-BR-A4QL-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911553	74911553	Nonsense_Mutation	C	T	p.R154*
STAD	TCGA-BR-A4QL-01	WSB1	ENST00000348811.2,ENST00000262394.2,ENST00000467843.2	chr17	25636125:25636298:25637086:25637200:25638534:25638642,	25637087	25637200	25637145	25637145	Nonsense_Mutation	C	T	p.R315*
STAD	TCGA-BR-A4QL-01	RUNDC1	ENST00000361677.1	chr17	41139272:41139431:41141357:41141556:41142333:41142453,	41141358	41141556	41141481	41141481	Nonsense_Mutation	C	T	p.R261*
STAD	TCGA-BR-A4QL-01	NLRP2	ENST00000538819.1,ENST00000448584.2,ENST00000263437.6,ENST00000537859.1	chr19	55477773:55477835:55481366:55481663:55485867:55485912,	55481367	55481663	55481624	55481624	Nonsense_Mutation	C	T	p.R81*
STAD	TCGA-BR-A4QL-01	NLRP2	ENST00000427260.2	chr19	55481366:55481521:55481590:55481663:55485867:55485912,	55481591	55481663	55481624	55481624	Nonsense_Mutation	C	T	p.R81*
STAD	TCGA-BR-A4QL-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381658	109381658	Nonsense_Mutation	C	T	p.R1555*
STAD	TCGA-BR-A4QL-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000467388.1,ENST00000426233.1,ENST00000540518.1,ENST00000446622.1,ENST00000236959.9	chr2	216203592:216203630:216209501:216209594:216211481:216211664,	216209502	216209594	216209520	216209520	Nonsense_Mutation	C	T	p.R416*
STAD	TCGA-BR-A4QL-01	STX16	ENST00000467096.1,ENST00000490700.1,ENST00000359617.4,ENST00000361770.5,ENST00000483434.1,ENST00000361830.3,ENST00000476384.1,ENST00000371132.4,ENST00000358029.4,ENST00000371141.4,ENST00000355957.5	chr20	57245567:57245659:57246209:57246353:57248686:57248767,	57246210	57246353	57246273	57246273	Nonsense_Mutation	C	T	p.R238*
STAD	TCGA-BR-A4QL-01	STX16	ENST00000464640.1	chr20	57245567:57245659:57246219:57246353:57248686:57248767,	57246220	57246353	57246273	57246273	Nonsense_Mutation	C	T	p.R238*
STAD	TCGA-BR-A4QL-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78766912:78767033:78795892:78796050:78987750:78988077,	78795893	78796050	78796030	78796030	Nonsense_Mutation	G	A	p.Q174*
STAD	TCGA-BR-A4QL-01	CPOX	ENST00000264193.2	chr3	98298285:98299614:98300250:98300355:98304284:98304342,	98300251	98300355	98300252	98300252	Nonsense_Mutation	G	A	p.R426*
STAD	TCGA-BR-A4QL-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56837435:56837574:56840911:56841135:56846308:56846461,	56840912	56841135	56841070	56841070	Nonsense_Mutation	C	T	p.R470*
STAD	TCGA-BR-A4QL-01	TDO2	ENST00000509738.1,ENST00000536354.2	chr4	156824846:156824945:156825169:156825275:156826218:156826308,	156825170	156825275	156825180	156825180	Nonsense_Mutation	A	T	p.K16*
STAD	TCGA-BR-A4QL-01	CTNNA1	ENST00000518825.1,ENST00000520158.1,ENST00000519309.1,ENST00000302763.7	chr5	138118865:138119061:138145726:138145893:138147871:138147991,	138145727	138145893	138145810	138145810	Nonsense_Mutation	C	T	p.R129*
STAD	TCGA-BR-A4QL-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390581	45390581	Nonsense_Mutation	G	T	p.E104*
STAD	TCGA-BR-A4QL-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469089	21469089	Nonsense_Mutation	G	A	p.W102*
STAD	TCGA-CD-5798-01	SHMT2	ENST00000553837.1,ENST00000553474.1,ENST00000556825.1,ENST00000557529.1,ENST00000555634.1,ENST00000557348.1,ENST00000557433.1,ENST00000328923.3,ENST00000555116.1,ENST00000555774.1,ENST00000555563.1,ENST00000414700.3,ENST00000393827.4,ENST00000557487.1,ENST00000449049.3	chr12	57626265:57626358:57626486:57626626:57626962:57627022,	57626487	57626626	57626616	57626616	Nonsense_Mutation	C	T	p.R283*
STAD	TCGA-CD-5801-01	ST5	ENST00000526099.1,ENST00000534127.1,ENST00000526757.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1,ENST00000533020.1	chr11	8732391:8732461:8732668:8732778:8734097:8734267,	8732669	8732778	8732693	8732693	Nonsense_Mutation	C	T	p.W753*
STAD	TCGA-CD-5801-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8165784:8165856:8167607:8167757:8168445:8168571,	8167608	8167757	8167646	8167646	Nonsense_Mutation	C	T	p.W1684*
STAD	TCGA-CD-5802-01	ASB5	ENST00000512254.1,ENST00000296525.3	chr4	177137968:177138160:177142305:177142440:177142600:177142751,	177142306	177142440	177142387	177142387	Nonsense_Mutation	C	A	p.E197*
STAD	TCGA-CD-5813-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95186024:95186224:95186329:95186488:95188768:95188907,	95186330	95186488	95186360	95186360	Nonsense_Mutation	T	A	p.K185*
STAD	TCGA-CD-8524-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
STAD	TCGA-CD-8524-01	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000431076.1	chr2	155102324:155102495:155115533:155115651:155157921:155158102,	155115534	155115651	155115621	155115621	Nonsense_Mutation	G	A	p.W315*
STAD	TCGA-CD-8524-01	TUSC3	ENST00000509380.1,ENST00000515859.1,ENST00000510836.1,ENST00000506802.1,ENST00000382020.4,ENST00000503731.1	chr8	15397791:15398077:15480588:15480758:15508205:15508323,	15480589	15480758	15480610	15480610	Nonsense_Mutation	G	T	p.E54*
STAD	TCGA-CD-8527-01	TRAFD1	ENST00000257604.5,ENST00000412615.2	chr12	112585877:112586108:112587554:112587675:112589604:112589944,	112587555	112587675	112587666	112587666	Nonsense_Mutation	A	T	p.R424*
STAD	TCGA-CD-8527-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000505312.1,ENST00000514595.1	chr5	118576113:118576166:118580053:118580271:118582689:118583060,	118580054	118580271	118580164	118580164	Nonsense_Mutation	C	T	p.R2918*
STAD	TCGA-CD-8528-01	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844528	27844528	Nonsense_Mutation	C	T	p.Q588*
STAD	TCGA-CD-8529-01	NAA30	ENST00000556492.1	chr14	57857305:57857423:57857674:57858446:57863469:57863593,	57857675	57858446	57858401	57858401	Nonsense_Mutation	T	A	p.Y242*
STAD	TCGA-CD-8530-01	ADD3	ENST00000356080.4,ENST00000277900.8,ENST00000475954.1	chr10	111765561:111765909:111860382:111860606:111872534:111872652,111768009:111768057:111860382:111860606:111872534:111872652,	111860383	111860606	111860580	111860580	Nonsense_Mutation	C	T	p.R57*
STAD	TCGA-CD-8535-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
STAD	TCGA-CD-8535-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2,ENST00000430789.1	chr2	100360565:100360602:100368682:100368763:100453938:100453986,	100368683	100368763	100368730	100368730	Nonsense_Mutation	G	A	p.Q319*
STAD	TCGA-CD-8535-01	TIMM17B	ENST00000376582.3	chrX	48752320:48752384:48754041:48754141:48755006:48755045,	48754042	48754141	48754135	48754135	Nonsense_Mutation	C	T	p.W11*
STAD	TCGA-CD-8536-01	TRUB1	ENST00000485065.1	chr10	116698144:116698298:116702403:116702502:116710852:116710908,	116702404	116702502	116702490	116702490	Nonsense_Mutation	C	T	p.R125*
STAD	TCGA-CD-8536-01	SLC23A3	ENST00000498327.1,ENST00000295738.7,ENST00000455516.2,ENST00000409878.3,ENST00000396775.3	chr2	220027020:220027116:220028109:220028277:220028954:220029060,	220028110	220028277	220028197	220028197	Nonsense_Mutation	G	A	p.R452*
STAD	TCGA-CD-8536-01	SLC23A3	ENST00000318673.3	chr2	220027020:220027116:220028109:220028225:220032651:220032700,	220028110	220028225	220028197	220028197	Nonsense_Mutation	G	A	p.R452*
STAD	TCGA-CD-8536-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39831063	39831063	Nonsense_Mutation	G	A	p.R832*
STAD	TCGA-CD-8536-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39831063	39831063	Nonsense_Mutation	G	A	p.R832*
STAD	TCGA-CD-8536-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54319086:54319300:54324819:54324957:54325468:54325569,	54324820	54324957	54324830	54324830	Nonsense_Mutation	C	T	p.R504*
STAD	TCGA-CD-8536-01	GUSB	ENST00000304895.4,ENST00000345660.6,ENST00000478118.1	chr7	65444464:65444528:65444713:65444898:65445210:65445392,	65444714	65444898	65444731	65444731	Nonsense_Mutation	G	T	p.Y188*
STAD	TCGA-CD-8536-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	624006	624006	Nonsense_Mutation	T	A	p.K116*
STAD	TCGA-CD-8536-01	DCAF13	ENST00000518554.1,ENST00000519682.1	chr8	104427639:104427744:104432491:104432691:104438283:104438373,104427639:104427744:104432491:104432691:104433202:104433310,	104432492	104432691	104432575	104432575	Nonsense_Mutation	C	T	p.R204*
STAD	TCGA-CD-8536-01	LUZP4	ENST00000371920.3	chrX	114536556:114536688:114537864:114537983:114540769:114542119,	114537865	114537983	114537966	114537966	Nonsense_Mutation	C	T	p.Q109*
STAD	TCGA-CD-A486-01	MARCH5	ENST00000462465.1	chr10	94070891:94071094:94100429:94100560:94109105:94109180,94093263:94093382:94100429:94100560:94109105:94109180,	94100430	94100560	94100524	94100524	Nonsense_Mutation	G	A	p.W111*
STAD	TCGA-CD-A486-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000531080.1,ENST00000532057.1,ENST00000526785.1,ENST00000530013.1,ENST00000530401.1,ENST00000448981.2	chr11	33770322:33770438:33772084:33772207:33773068:33773153,	33772085	33772207	33772191	33772191	Nonsense_Mutation	C	A	p.E276*
STAD	TCGA-CD-A489-01	TEX264	ENST00000463857.1,ENST00000489026.1,ENST00000395057.1,ENST00000415259.1,ENST00000457573.1,ENST00000493444.1,ENST00000416589.1,ENST00000341333.5	chr3	51718428:51718650:51733421:51733590:51737739:51737825,	51733422	51733590	51733461	51733461	Nonsense_Mutation	C	T	p.Q174*
STAD	TCGA-CD-A48A-01	MTMR6	ENST00000381801.5	chr13	25820338:25823630:25825786:25825913:25825990:25826122,	25825787	25825913	25825882	25825882	Nonsense_Mutation	G	A	p.R504*
STAD	TCGA-CD-A48C-01	ATG4D	ENST00000309469.4,ENST00000586417.1	chr19	10655795:10655806:10657514:10657791:10657864:10657929,	10657515	10657791	10657622	10657622	Nonsense_Mutation	C	T	p.Q201*
STAD	TCGA-CD-A48C-01	ATG4D	ENST00000587256.1	chr19	10655795:10655806:10657514:10657758:10657864:10657929,	10657515	10657758	10657622	10657622	Nonsense_Mutation	C	T	p.Q201*
STAD	TCGA-CD-A48C-01	ATG4D	ENST00000590096.1	chr19	10655795:10655806:10657514:10657929:10659579:10659710,	10657515	10657929	10657622	10657622	Nonsense_Mutation	C	T	p.Q201*
STAD	TCGA-CD-A48C-01	ATG4D	ENST00000588857.1	chr19	10655795:10655806:10657514:10657747:10657864:10657929,	10657515	10657747	10657622	10657622	Nonsense_Mutation	C	T	p.Q201*
STAD	TCGA-CD-A48C-01	PLEKHA4	ENST00000596982.1	chr19	49363606:49363716:49364657:49364758:49368759:49368814,	49364658	49364758	49364712	49364712	Nonsense_Mutation	G	T	p.Y104*
STAD	TCGA-CD-A4MG-01	DEPDC1	ENST00000456315.2	chr1	68947122:68947295:68947728:68948580:68949632:68949773,	68947729	68948580	68948218	68948218	Nonsense_Mutation	C	A	p.G425*
STAD	TCGA-CD-A4MG-01	PHTF1	ENST00000447664.2	chr1	114255900:114256060:114267380:114267515:114269039:114269080,114254561:114254735:114267380:114267515:114269039:114269080,	114267381	114267515	114267508	114267508	Nonsense_Mutation	G	A	p.R166*
STAD	TCGA-CD-A4MG-01	CYB5R1	ENST00000482572.1,ENST00000367249.4,ENST00000446185.1	chr1	202933739:202933823:202934498:202934628:202935014:202935121,	202934499	202934628	202934505	202934505	Nonsense_Mutation	C	A	p.G157*
STAD	TCGA-CD-A4MG-01	DDB1	ENST00000540166.1,ENST00000545930.1,ENST00000539712.1,ENST00000540784.1,ENST00000539739.1,ENST00000301764.7,ENST00000535174.1	chr11	61089066:61089169:61089767:61089884:61090482:61090566,	61089768	61089884	61089821	61089821	Nonsense_Mutation	C	A	p.G357*
STAD	TCGA-CD-A4MG-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R444*
STAD	TCGA-CD-A4MG-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117190	72117190	Nonsense_Mutation	G	T	p.G653*
STAD	TCGA-CD-A4MG-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117190	72117190	Nonsense_Mutation	G	T	p.G653*
STAD	TCGA-CD-A4MG-01	TYRO3	ENST00000560227.1,ENST00000263798.3,ENST00000559066.1	chr15	41857223:41857339:41859557:41859735:41860414:41860463,	41859558	41859735	41859581	41859581	Nonsense_Mutation	G	A	p.W269*
STAD	TCGA-CD-A4MG-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782280	56782280	Nonsense_Mutation	G	T	p.E41*
STAD	TCGA-CD-A4MG-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601209	28601209	Nonsense_Mutation	G	A	p.R218*
STAD	TCGA-CD-A4MG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254421	9254421	Nonsense_Mutation	C	T	p.R386*
STAD	TCGA-CD-A4MG-01	MKNK2	ENST00000586828.1,ENST00000309340.7,ENST00000591601.1,ENST00000541165.1,ENST00000250896.3	chr19	2046365:2046467:2046602:2046690:2050799:2050852,	2046603	2046690	2046621	2046621	Nonsense_Mutation	G	A	p.Q41*
STAD	TCGA-CD-A4MG-01	LENG8	ENST00000376526.4,ENST00000439657.1,ENST00000431846.1,ENST00000326764.5	chr19	54965608:54965861:54966129:54966271:54966542:54966622,	54966130	54966271	54966171	54966171	Nonsense_Mutation	C	T	p.R204*
STAD	TCGA-CD-A4MG-01	RBKS	ENST00000444339.2,ENST00000302188.3,ENST00000449378.1	chr2	28055552:28055644:28065933:28066098:28069908:28069971,	28065934	28066098	28065937	28065937	Nonsense_Mutation	C	A	p.G171*
STAD	TCGA-CD-A4MG-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73786098:73786269:73799388:73800551:73826527:73826648,	73799389	73800551	73800417	73800417	Nonsense_Mutation	C	T	p.R3806*
STAD	TCGA-CD-A4MG-01	PHF20	ENST00000374000.4,ENST00000439301.1,ENST00000339089.6,ENST00000461122.1,ENST00000374012.3	chr20	34430494:34430666:34435271:34435356:34450934:34451170,34430494:34430666:34435271:34435356:34446223:34446303,	34435272	34435356	34435307	34435307	Nonsense_Mutation	G	A	p.W97*
STAD	TCGA-CD-A4MG-01	PGM3	ENST00000505470.1	chr6	83898463:83898517:83900527:83900733:83902897:83902950,83898463:83898517:83900527:83900733:83900905:83901042,83898332:83898513:83900527:83900733:83902897:83902950,	83900528	83900733	83900647	83900647	Nonsense_Mutation	G	A	p.R29*
STAD	TCGA-CD-A4MG-01	SYNCRIP	ENST00000355238.6,ENST00000369622.3	chr6	86328535:86328657:86328985:86329135:86332199:86332405,	86328986	86329135	86329093	86329093	Nonsense_Mutation	C	A	p.E351*
STAD	TCGA-CD-A4MG-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949323	116949323	Nonsense_Mutation	C	T	p.R485*
STAD	TCGA-CD-A4MG-01	TG	ENST00000542445.1,ENST00000519178.1	chr8	133953688:133953787:133961020:133961188:133973252:133973318,133948000:133948109:133961020:133961188:133973252:133973318,	133961021	133961188	133961176	133961176	Nonsense_Mutation	G	T	p.E1797*
STAD	TCGA-CD-A4MH-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000591234.1,ENST00000593153.1,ENST00000586995.1,ENST00000588877.1	chr17	67270111:67270269:67273781:67273983:67280093:67280213,	67273782	67273983	67273963	67273963	Nonsense_Mutation	G	A	p.Q805*
STAD	TCGA-CD-A4MH-01	FPGS	ENST00000431857.1,ENST00000423577.1,ENST00000373225.3	chr9	130565210:130565341:130566563:130566692:130566777:130566831,130565602:130565683:130566563:130566692:130566777:130566831,	130566564	130566692	130566591	130566591	Nonsense_Mutation	C	T	p.Q56*
STAD	TCGA-CD-A4MI-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155736194	155736194	Nonsense_Mutation	G	A	p.R1024*
STAD	TCGA-CD-A4MI-01	APPL2	ENST00000547809.1,ENST00000549974.1,ENST00000549573.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000550648.1,ENST00000258530.3	chr12	105597480:105597563:105600838:105600985:105601748:105601767,	105600839	105600985	105600917	105600917	Nonsense_Mutation	G	T	p.Y181*
STAD	TCGA-CD-A4MI-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672621	77672621	Nonsense_Mutation	C	A	p.E2852*
STAD	TCGA-CD-A4MI-01	ABCA3	ENST00000382381.3,ENST00000301732.5,ENST00000566200.1	chr16	2328295:2328459:2328943:2329131:2331027:2331222,	2328944	2329131	2329104	2329104	Nonsense_Mutation	G	A	p.Q1463*
STAD	TCGA-CD-A4MI-01	TMEM208	ENST00000562235.1	chr16	67262257:67262317:67262397:67262560:67262699:67262739,	67262398	67262560	67262461	67262461	Nonsense_Mutation	C	T	p.R76*
STAD	TCGA-CD-A4MI-01	TMEM208	ENST00000565201.1,ENST00000563953.1,ENST00000304800.9	chr16	67262257:67262317:67262397:67262534:67262699:67262739,	67262398	67262534	67262461	67262461	Nonsense_Mutation	C	T	p.R76*
STAD	TCGA-CD-A4MI-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15884764:15884894:15889212:15889362:15893470:15893542,	15889213	15889362	15889305	15889305	Nonsense_Mutation	C	A	p.G63*
STAD	TCGA-CD-A4MI-01	CCDC157	ENST00000338306.3,ENST00000405659.1	chr22	30765420:30765592:30766314:30766939:30767638:30767716,	30766315	30766939	30766894	30766894	Nonsense_Mutation	C	T	p.Q334*
STAD	TCGA-CD-A4MI-01	L3MBTL2	ENST00000479978.1,ENST00000452106.1,ENST00000216237.5,ENST00000466589.1	chr22	41623807:41623873:41625543:41625660:41626142:41626658,	41625544	41625660	41625570	41625570	Nonsense_Mutation	C	T	p.R639*
STAD	TCGA-CD-A4MI-01	ABCB4	ENST00000265723.4	chr7	87032450:87032597:87035603:87035831:87037352:87037550,	87035604	87035831	87035769	87035769	Nonsense_Mutation	C	T	p.W1114*
STAD	TCGA-CD-A4MI-01	ABCB4	ENST00000545634.1,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87032450:87032597:87035603:87035810:87037352:87037550,	87035604	87035810	87035769	87035769	Nonsense_Mutation	C	T	p.W1114*
STAD	TCGA-CD-A4MI-01	PREX2	ENST00000288368.4	chr8	69058443:69058587:69069556:69069671:69103956:69104023,	69069557	69069671	69069574	69069574	Nonsense_Mutation	G	T	p.G1417*
STAD	TCGA-CD-A4MJ-01	MFSD2A	ENST00000491515.1	chr1	40432757:40432841:40433299:40433588:40434005:40434149,	40433300	40433588	40433330	40433330	Nonsense_Mutation	C	T	p.Q361*
STAD	TCGA-CD-A4MJ-01	MFSD2A	ENST00000480630.1	chr1	40432757:40432841:40433299:40433383:40433475:40433588,40432333:40432363:40433299:40433383:40433475:40433588,	40433300	40433383	40433330	40433330	Nonsense_Mutation	C	T	p.Q361*
STAD	TCGA-CD-A4MJ-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224807	51224807	Nonsense_Mutation	G	A	p.Q981*
STAD	TCGA-CD-A4MJ-01	FER	ENST00000502752.1,ENST00000536402.1,ENST00000281092.4	chr5	108133824:108134090:108168470:108168644:108171408:108171508,	108168471	108168644	108168618	108168618	Nonsense_Mutation	C	T	p.Q119*
STAD	TCGA-CD-A4MJ-01	PIM1	ENST00000373509.5	chr6	37138974:37139267:37140771:37140948:37141709:37142023,	37140772	37140948	37140777	37140777	Nonsense_Mutation	C	T	p.R205*
STAD	TCGA-CD-A4MJ-01	DLG3	ENST00000194900.4,ENST00000374360.3,ENST00000463252.1	chrX	69669208:69669333:69669539:69669709:69670018:69670155,	69669540	69669709	69669655	69669655	Nonsense_Mutation	C	T	p.R217*
STAD	TCGA-CD-A4MJ-01	CXorf56	ENST00000320339.4,ENST00000371594.4	chrX	118678315:118678454:118679425:118679467:118694230:118694348,	118679426	118679467	118679451	118679451	Nonsense_Mutation	G	A	p.R87*
STAD	TCGA-CG-4300-01	FAR2	ENST00000182377.4	chr12	29302252:29302340:29423344:29423571:29446232:29446408,29376677:29376827:29423344:29423571:29446232:29446408,	29423345	29423571	29423406	29423406	Nonsense_Mutation	T	G	p.Y8*
STAD	TCGA-CG-4300-01	HCK	ENST00000538448.1,ENST00000518730.1,ENST00000486475.1,ENST00000375862.2,ENST00000375852.2,ENST00000520553.1,ENST00000262651.3,ENST00000534862.1	chr20	30681665:30681819:30686806:30686938:30689119:30689322,	30686807	30686938	30686829	30686829	Nonsense_Mutation	G	A	p.W423*
STAD	TCGA-CG-4301-01	EPB41L3	ENST00000542146.1,ENST00000579271.1	chr18	5397396:5397425:5398019:5398142:5400967:5401042,5397396:5397425:5398019:5398142:5406775:5406967,5397396:5397425:5398019:5398142:5400495:5400594,	5398020	5398142	5398076	5398076	Nonsense_Mutation	G	A	p.R806*
STAD	TCGA-CG-4301-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174820642	174820642	Nonsense_Mutation	C	A	p.E200*
STAD	TCGA-CG-4304-01	LDLR	ENST00000558013.1,ENST00000545707.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1,ENST00000535915.1	chr19	11217240:11217363:11218067:11218190:11221327:11221447,	11218068	11218190	11218184	11218184	Nonsense_Mutation	G	T	p.E312*
STAD	TCGA-CG-4305-01	CDC7	ENST00000428239.1,ENST00000234626.6,ENST00000430031.2	chr1	91981350:91981433:91985686:91985836:91989597:91990056,	91985687	91985836	91985737	91985737	Nonsense_Mutation	C	T	p.R411*
STAD	TCGA-CG-4305-01	FCRLA	ENST00000367957.2	chr1	161680997:161681264:161681723:161682008:161682874:161683242,161680549:161680702:161681723:161682008:161682874:161683242,161677084:161677133:161681723:161682008:161682874:161683242,	161681724	161682008	161681777	161681777	Nonsense_Mutation	G	T	p.G208*
STAD	TCGA-CG-4305-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681777	161681777	Nonsense_Mutation	G	T	p.G208*
STAD	TCGA-CG-4305-01	TMEM63A	ENST00000366835.3	chr1	226046895:226047049:226048559:226048697:226049917:226050051,	226048560	226048697	226048598	226048598	Nonsense_Mutation	C	T	p.W395*
STAD	TCGA-CG-4305-01	TTC12	ENST00000529850.1,ENST00000525965.1,ENST00000314756.3,ENST00000494714.1	chr11	113185328:113185340:113186964:113187037:113194009:113194173,	113186965	113187037	113187019	113187019	Nonsense_Mutation	A	T	p.K14*
STAD	TCGA-CG-4305-01	TTC12	ENST00000429951.1	chr11	113185328:113185340:113186672:113187037:113194009:113194173,	113186673	113187037	113187019	113187019	Nonsense_Mutation	A	T	p.K14*
STAD	TCGA-CG-4305-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	121059788:121059876:121060472:121060589:121061414:121061515,	121060473	121060589	121060508	121060508	Nonsense_Mutation	C	T	p.Q2096*
STAD	TCGA-CG-4305-01	SPATS2	ENST00000552557.1,ENST00000321898.6,ENST00000553127.1,ENST00000552918.1	chr12	49890615:49890792:49893852:49893988:49908337:49908396,	49893853	49893988	49893963	49893963	Nonsense_Mutation	C	T	p.Q272*
STAD	TCGA-CG-4305-01	MARK3	ENST00000303622.9,ENST00000416682.2,ENST00000216288.7	chr14	103946773:103946827:103958113:103958371:103964838:103964865,103946773:103946827:103958113:103958371:103966492:103966537,103946773:103946827:103958113:103958371:103969218:103969403,	103958114	103958371	103958244	103958244	Nonsense_Mutation	C	T	p.R573*
STAD	TCGA-CG-4305-01	ZZEF1	ENST00000573183.1,ENST00000571436.1,ENST00000381638.2	chr17	3935419:3935552:3936121:3936296:3937308:3937441,	3936122	3936296	3936194	3936194	Nonsense_Mutation	G	T	p.C2229*
STAD	TCGA-CG-4305-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067454	62067454	Nonsense_Mutation	G	A	p.R229*
STAD	TCGA-CG-4305-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067454	62067454	Nonsense_Mutation	G	A	p.R229*
STAD	TCGA-CG-4305-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677405	73677405	Nonsense_Mutation	C	T	p.Q1252*
STAD	TCGA-CG-4305-01	TRAK2	ENST00000332624.3	chr2	202254523:202254603:202257631:202257769:202259520:202259595,	202257632	202257769	202257733	202257733	Nonsense_Mutation	C	A	p.G338*
STAD	TCGA-CG-4305-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000440957.2,ENST00000348417.2,ENST00000349441.2	chr3	129207099:129207240:129210983:129211037:129218744:129218911,129207099:129207240:129210983:129211037:129214288:129214330,	129210984	129211037	129211008	129211008	Nonsense_Mutation	C	T	p.R673*
STAD	TCGA-CG-4305-01	ARAP2	ENST00000303965.4	chr4	36075310:36075445:36081837:36081901:36083872:36083908,	36081838	36081901	36081901	36081901	Nonsense_Mutation	C	T	p.W1515*
STAD	TCGA-CG-4305-01	SAMD12	ENST00000524796.1,ENST00000409003.4	chr8	119209785:119209971:119391798:119391939:119452070:119452200,	119391799	119391939	119391937	119391937	Nonsense_Mutation	G	A	p.R109*
STAD	TCGA-CG-4306-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000380554.3	chr10	5141518:5141641:5144292:5144402:5144676:5144842,	5144293	5144402	5144398	5144398	Nonsense_Mutation	C	T	p.R226*
STAD	TCGA-CG-4306-01	MIPOL1	ENST00000539062.2,ENST00000556451.1,ENST00000327441.7,ENST00000536774.1,ENST00000396294.2,ENST00000545536.1,ENST00000537471.1	chr14	37777662:37777724:37838721:37838829:37892059:37892154,	37838722	37838829	37838737	37838737	Nonsense_Mutation	C	T	p.Q282*
STAD	TCGA-CG-4306-01	MYO5B	ENST00000285039.7,ENST00000587895.1,ENST00000592779.1,ENST00000324581.6	chr18	47389631:47389697:47390510:47390750:47398536:47398602,	47390511	47390750	47390531	47390531	Nonsense_Mutation	G	A	p.R1275*
STAD	TCGA-CG-4306-01	MAG	ENST00000537831.2,ENST00000361922.4,ENST00000392213.3,ENST00000593348.1	chr19	35800776:35801064:35801449:35801546:35802820:35802912,	35801450	35801546	35801452	35801452	Nonsense_Mutation	C	T	p.R508*
STAD	TCGA-CG-4306-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961140	39961140	Nonsense_Mutation	C	T	p.R552*
STAD	TCGA-CG-4306-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220501023:220501172:220501401:220501596:220502302:220502517,	220501402	220501596	220501408	220501408	Nonsense_Mutation	C	T	p.R783*
STAD	TCGA-CG-4306-01	PCCB	ENST00000471595.1	chr3	136047599:136047699:136048746:136048826:136052243:136056737,	136048747	136048826	136048788	136048788	Nonsense_Mutation	C	T	p.R514*
STAD	TCGA-CG-4306-01	CDC40	ENST00000368930.1,ENST00000368932.1,ENST00000307731.1,ENST00000606893.1	chr6	110536488:110536534:110538904:110539006:110540566:110540682,	110538905	110539006	110538952	110538952	Nonsense_Mutation	C	T	p.Q346*
STAD	TCGA-CG-4306-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000465461.2,ENST00000360264.3,ENST00000556210.1,ENST00000485792.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101747716:101747739:101754977:101755054:101758486:101758553,	101754978	101755054	101755048	101755048	Nonsense_Mutation	C	T	p.Q201*
STAD	TCGA-CG-4306-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000397519.2	chr9	15478474:15478550:15479588:15479685:15486003:15486066,	15479589	15479685	15479598	15479598	Nonsense_Mutation	G	A	p.R182*
STAD	TCGA-CG-4436-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576897	7576897	Nonsense_Mutation	G	A	p.Q317*
STAD	TCGA-CG-4437-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648626	85648626	Nonsense_Mutation	G	A	p.R567*
STAD	TCGA-CG-4437-01	TAF1D	ENST00000526015.1,ENST00000527068.1,ENST00000323981.2	chr11	93467790:93467826:93469306:93469470:93469859:93469907,	93469307	93469470	93469380	93469380	Nonsense_Mutation	T	A	p.K262*
STAD	TCGA-CG-4437-01	MCM8	ENST00000378886.2,ENST00000265187.4,ENST00000378896.3	chr20	5953701:5953842:5958521:5958663:5963615:5963811,	5958522	5958663	5958554	5958554	Nonsense_Mutation	T	A	p.Y476*
STAD	TCGA-CG-4437-01	DNMT3L	ENST00000418993.1,ENST00000270172.3	chr21	45679519:45679594:45680677:45680722:45681036:45681149,	45680678	45680722	45680690	45680690	Nonsense_Mutation	G	A	p.R47*
STAD	TCGA-CG-4437-01	CNBP	ENST00000500450.2	chr3	128890288:128890381:128890497:128890614:128902618:128902707,128890288:128890351:128890497:128890614:128902618:128902707,	128890498	128890614	128890519	128890519	Nonsense_Mutation	C	A	p.G28*
STAD	TCGA-CG-4437-01	CNBP	ENST00000504813.1	chr3	128890288:128890381:128890476:128890614:128902618:128902707,128890288:128890351:128890476:128890614:128902618:128902707,	128890477	128890614	128890519	128890519	Nonsense_Mutation	C	A	p.G28*
STAD	TCGA-CG-4437-01	CNBP	ENST00000512338.1	chr3	128890288:128890381:128890494:128890614:128902618:128902707,	128890495	128890614	128890519	128890519	Nonsense_Mutation	C	A	p.G28*
STAD	TCGA-CG-4438-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
STAD	TCGA-CG-4442-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000564288.1	chr1	39838150:39838268:39844132:39844195:39844874:39845116,	39844133	39844195	39844153	39844153	Nonsense_Mutation	G	T	p.G2852*
STAD	TCGA-CG-4442-01	KLHL20	ENST00000209884.4	chr1	173685141:173685205:173702851:173703425:173720902:173721061,	173702852	173703425	173702865	173702865	Nonsense_Mutation	C	T	p.R13*
STAD	TCGA-CG-4442-01	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212515529:212515622:212519144:212519275:212520688:212520748,	212519145	212519275	212519208	212519208	Nonsense_Mutation	C	T	p.R213*
STAD	TCGA-CG-4442-01	SLC4A8	ENST00000358657.3,ENST00000535225.2,ENST00000604314.1,ENST00000453097.2,ENST00000551071.1,ENST00000394856.1,ENST00000514353.3,ENST00000319957.6	chr12	51864175:51864309:51865070:51865316:51868125:51868231,	51865071	51865316	51865099	51865099	Nonsense_Mutation	C	T	p.R563*
STAD	TCGA-CG-4442-01	SETDB2	ENST00000317257.8,ENST00000354234.4	chr13	50059765:50059859:50062425:50062766:50064957:50065046,	50062426	50062766	50062611	50062611	Nonsense_Mutation	C	T	p.R600*
STAD	TCGA-CG-4442-01	PLEKHH3	ENST00000591196.1,ENST00000456950.2	chr17	40821447:40821639:40821960:40822394:40822590:40822723,	40821961	40822394	40822025	40822025	Nonsense_Mutation	G	A	p.R642*
STAD	TCGA-CG-4442-01	PLEKHH3	ENST00000293349.6,ENST00000591022.1	chr17	40821447:40821639:40821935:40822394:40822590:40822723,	40821936	40822394	40822025	40822025	Nonsense_Mutation	G	A	p.R642*
STAD	TCGA-CG-4442-01	MED16	ENST00000592943.1,ENST00000312090.6,ENST00000395808.3,ENST00000325464.1,ENST00000589119.1,ENST00000269814.4,ENST00000606248.1	chr19	886054:886201:889637:889807:890136:890423,	889638	889807	889762	889762	Nonsense_Mutation	C	T	p.W108*
STAD	TCGA-CG-4442-01	CHRND	ENST00000412233.1,ENST00000457943.2,ENST00000441621.2,ENST00000258385.3,ENST00000536614.1,ENST00000446616.1	chr2	233391242:233391384:233392110:233392155:233392971:233393049,	233392111	233392155	233392150	233392150	Nonsense_Mutation	G	T	p.E80*
STAD	TCGA-CG-4442-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62598228:62598357:62598733:62598876:62599182:62599305,	62598734	62598876	62598853	62598853	Nonsense_Mutation	G	A	p.Q49*
STAD	TCGA-CG-4442-01	RNF14	ENST00000394515.3	chr5	141353147:141353307:141354368:141354520:141357867:141357959,141353147:141353307:141354368:141354520:141359687:141359842,	141354369	141354520	141354463	141354463	Nonsense_Mutation	T	A	p.Y83*
STAD	TCGA-CG-4442-01	KATNA1	ENST00000367411.2,ENST00000335647.5	chr6	149916012:149916370:149918198:149918325:149918642:149918777,	149918199	149918325	149918302	149918302	Nonsense_Mutation	G	A	p.R392*
STAD	TCGA-CG-4442-01	TNFRSF10A	ENST00000221132.3,ENST00000524158.1	chr8	23057398:23057430:23058017:23058113:23058199:23058273,	23058018	23058113	23058108	23058108	Nonsense_Mutation	C	A	p.G237*
STAD	TCGA-CG-4442-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144999422	144999422	Nonsense_Mutation	G	A	p.R1696*
STAD	TCGA-CG-4442-01	SLC44A1	ENST00000374723.1,ENST00000470972.1,ENST00000374724.1,ENST00000374720.3	chr9	108072029:108072147:108097843:108097980:108110638:108110732,	108097844	108097980	108097858	108097858	Nonsense_Mutation	T	A	p.L95*
STAD	TCGA-CG-4462-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37051880:37051988:37052467:37052668:37057287:37057434,	37052468	37052668	37052624	37052624	Nonsense_Mutation	C	T	p.R2407*
STAD	TCGA-CG-4465-01	CPXM2	ENST00000368854.3,ENST00000241305.3	chr10	125558630:125558715:125601864:125602004:125622129:125622239,	125601865	125602004	125601941	125601941	Nonsense_Mutation	G	A	p.Q193*
STAD	TCGA-CG-4465-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109689850:109689961:109690819:109690963:109692018:109692139,	109690820	109690963	109690945	109690945	Nonsense_Mutation	G	A	p.W2009*
STAD	TCGA-CG-4465-01	DSG1	ENST00000257192.4	chr18	28911663:28911830:28913551:28913686:28913979:28914165,	28913552	28913686	28913591	28913591	Nonsense_Mutation	C	T	p.R242*
STAD	TCGA-CG-4465-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795871	42795871	Nonsense_Mutation	C	T	p.Q954*
STAD	TCGA-CG-4465-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203397307:203397455:203407033:203407170:203417438:203417611,	203407034	203407170	203407105	203407105	Nonsense_Mutation	C	T	p.Q450*
STAD	TCGA-CG-4465-01	SLC17A3	ENST00000509714.1,ENST00000308453.5,ENST00000397060.4,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25851000:25851105:25855371:25855458:25861851:25861939,	25855372	25855458	25855394	25855394	Nonsense_Mutation	C	T	p.W152*
STAD	TCGA-CG-4465-01	IGFBP3	ENST00000381086.5,ENST00000275521.6	chr7	45956219:45956266:45956811:45957038:45960336:45960439,	45956812	45957038	45957023	45957023	Nonsense_Mutation	G	T	p.S140*
STAD	TCGA-CG-4465-01	PAPPA	ENST00000328252.3	chr9	118969734:118969880:118973917:118974211:118982215:118982408,	118973918	118974211	118974189	118974189	Nonsense_Mutation	C	G	p.Y632*
STAD	TCGA-CG-4466-01	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000469607.1,ENST00000329066.4,ENST00000422464.1,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3,ENST00000346956.3	chr2	1497573:1497811:1499760:1499969:1500366:1500537,	1499761	1499969	1499798	1499798	Nonsense_Mutation	C	T	p.Q682*
STAD	TCGA-CG-4466-01	GBE1	ENST00000489715.1,ENST00000429644.2	chr3	81635242:81635341:81640187:81640315:81643058:81643174,	81640188	81640315	81640313	81640313	Nonsense_Mutation	G	A	p.Q371*
STAD	TCGA-CG-4466-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436586	16436586	Nonsense_Mutation	G	A	p.R536*
STAD	TCGA-CG-4469-01	DGKA	ENST00000548047.1,ENST00000551585.1,ENST00000551739.1,ENST00000557180.1,ENST00000551296.1,ENST00000549079.2,ENST00000402956.3,ENST00000553084.1,ENST00000552478.1,ENST00000331886.5,ENST00000555218.1,ENST00000394147.1,ENST00000551156.1	chr12	56335068:56335109:56335293:56335368:56335781:56335821,	56335294	56335368	56335328	56335328	Nonsense_Mutation	C	T	p.R404*
STAD	TCGA-CG-4469-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
STAD	TCGA-CG-4469-01	ZNF302	ENST00000505163.1,ENST00000446502.2,ENST00000423823.2,ENST00000509196.1,ENST00000457781.2,ENST00000505242.1	chr19	35173681:35173802:35174059:35174143:35175156:35175369,	35174060	35174143	35174131	35174131	Nonsense_Mutation	A	T	p.K112*
STAD	TCGA-CG-4474-01	HGF	ENST00000453411.1,ENST00000457544.2	chr7	81374315:81374436:81381435:81381563:81386504:81386619,	81381436	81381563	81381520	81381520	Nonsense_Mutation	G	A	p.R181*
STAD	TCGA-CG-4474-01	HGF	ENST00000444829.2,ENST00000222390.5	chr7	81374315:81374436:81381435:81381578:81386504:81386619,	81381436	81381578	81381520	81381520	Nonsense_Mutation	G	A	p.R181*
STAD	TCGA-CG-4476-01	MTMR11	ENST00000369140.3,ENST00000439741.2	chr1	149902683:149902857:149903151:149903318:149903835:149903906,	149903152	149903318	149903217	149903217	Nonsense_Mutation	G	A	p.R409*
STAD	TCGA-CG-4476-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82923943:82924546:82925792:82925967:82927676:82927854,	82925793	82925967	82925890	82925890	Nonsense_Mutation	G	A	p.R502*
STAD	TCGA-CG-5717-01	SLC5A6	ENST00000310574.3,ENST00000408041.1,ENST00000461319.1,ENST00000488743.2	chr2	27423969:27423981:27424217:27424321:27424533:27424715,	27424218	27424321	27424276	27424276	Nonsense_Mutation	G	T	p.Y530*
STAD	TCGA-CG-5718-01	BIRC6	ENST00000421745.2	chr2	32713654:32713781:32715107:32715218:32716491:32716625,	32715108	32715218	32715111	32715111	Nonsense_Mutation	C	G	p.S2700*
STAD	TCGA-CG-5718-01	IGFBP1	ENST00000275525.3	chr7	45930152:45930316:45931530:45931659:45932558:45933252,	45931531	45931659	45931540	45931540	Nonsense_Mutation	C	T	p.R177*
STAD	TCGA-CG-5719-01	GRM7	ENST00000357716.4,ENST00000389336.4,ENST00000440923.3,ENST00000445087.1,ENST00000402647.2,ENST00000486284.1,ENST00000389335.3,ENST00000403881.1,ENST00000467425.1,ENST00000463676.2	chr3	7456709:7456850:7494293:7494494:7503269:7503409,	7494294	7494494	7494338	7494338	Nonsense_Mutation	A	T	p.K407*
STAD	TCGA-CG-5720-01	USP48	ENST00000529637.1,ENST00000421625.2,ENST00000400301.1,ENST00000308271.9,ENST00000374730.2	chr1	22062938:22063118:22073559:22073642:22074630:22074684,	22073560	22073642	22073598	22073598	Nonsense_Mutation	G	C	p.S318*
STAD	TCGA-CG-5721-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000366992.3,ENST00000440600.2,ENST00000366993.3	chr1	212156017:212156152:212161227:212161345:212179980:212180103,	212161228	212161345	212161324	212161324	Nonsense_Mutation	G	A	p.Q301*
STAD	TCGA-CG-5721-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235894331:235894477:235896802:235896991:235897129:235897206,	235896803	235896991	235896835	235896835	Nonsense_Mutation	C	T	p.W2923*
STAD	TCGA-CG-5721-01	ATRNL1	ENST00000355044.3	chr10	116925317:116925405:116930794:116931050:116975454:116975638,	116930795	116931050	116930924	116930924	Nonsense_Mutation	C	T	p.Q408*
STAD	TCGA-CG-5721-01	STIP1	ENST00000537479.1,ENST00000305218.4,ENST00000544739.1,ENST00000538497.1,ENST00000358794.5,ENST00000538945.1	chr11	63964742:63964869:63964964:63965067:63965325:63965446,	63964965	63965067	63965054	63965054	Nonsense_Mutation	C	T	p.R297*
STAD	TCGA-CG-5721-01	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28610071:28610180:28611321:28611425:28622411:28622580,	28611322	28611425	28611391	28611391	Nonsense_Mutation	C	A	p.G414*
STAD	TCGA-CG-5721-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542843	24542843	Nonsense_Mutation	C	T	p.R102*
STAD	TCGA-CG-5721-01	PLEKHG4	ENST00000563969.1,ENST00000450733.1,ENST00000379344.3,ENST00000427155.2,ENST00000360461.5	chr16	67320347:67320569:67320651:67320822:67320902:67321080,	67320652	67320822	67320682	67320682	Nonsense_Mutation	C	T	p.R929*
STAD	TCGA-CG-5721-01	KRT13	ENST00000468313.1,ENST00000464634.2	chr17	39659910:39659977:39661307:39661487:39661698:39661849,	39661308	39661487	39661386	39661386	Nonsense_Mutation	C	T	p.W139*
STAD	TCGA-CG-5721-01	RPRD1B	ENST00000495457.1	chr20	36662233:36662500:36668836:36668966:36685933:36686046,	36668837	36668966	36668870	36668870	Nonsense_Mutation	T	A	p.L62*
STAD	TCGA-CG-5721-01	DGCR6L	ENST00000248879.3	chr22	20302858:20302999:20303641:20303742:20307161:20307309,	20303642	20303742	20303653	20303653	Nonsense_Mutation	G	A	p.R121*
STAD	TCGA-CG-5721-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000488914.1,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41266016:41266244:41266444:41266698:41266824:41267047,	41266445	41266698	41266486	41266486	Nonsense_Mutation	C	T	p.R95*
STAD	TCGA-CG-5721-01	HADH	ENST00000309522.3,ENST00000403312.1,ENST00000507260.1,ENST00000454409.2,ENST00000505878.1,ENST00000603302.1	chr4	108935625:108935744:108940695:108940822:108944629:108944719,	108940696	108940822	108940769	108940769	Nonsense_Mutation	C	T	p.R165*
STAD	TCGA-CG-5721-01	HIVEP1	ENST00000541134.1,ENST00000399469.2	chr6	12125978:12126103:12130999:12131175:12161671:12162124,	12131000	12131175	12131031	12131031	Nonsense_Mutation	C	T	p.R2081*
STAD	TCGA-CG-5721-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091213	143091213	Nonsense_Mutation	T	A	p.K1555*
STAD	TCGA-CG-5721-01	C9orf135	ENST00000529446.1,ENST00000377197.3	chr9	72472824:72472893:72501753:72501811:72520869:72521110,	72501754	72501811	72501762	72501762	Nonsense_Mutation	T	A	p.L153*
STAD	TCGA-CG-5723-01	IRF6	ENST00000542854.1,ENST00000367021.3	chr1	209961696:209961989:209963011:209963130:209963839:209964232,	209963012	209963130	209963054	209963054	Nonsense_Mutation	C	T	p.W379*
STAD	TCGA-CG-5723-01	HHIPL2	ENST00000343410.6	chr1	222715353:222715497:222716878:222717531:222721065:222721445,	222716879	222717531	222716949	222716949	Nonsense_Mutation	C	A	p.E302*
STAD	TCGA-CG-5723-01	CUBN	ENST00000377833.4	chr10	16990476:16990605:16991999:16992110:16994274:16994388,	16992000	16992110	16992003	16992003	Nonsense_Mutation	G	A	p.R1693*
STAD	TCGA-CG-5723-01	ARHGAP32	ENST00000526162.1,ENST00000524655.1,ENST00000310343.9,ENST00000527272.1,ENST00000392657.3	chr11	128850447:128850643:128851310:128851456:128851723:128851831,	128851311	128851456	128851443	128851443	Nonsense_Mutation	C	A	p.E536*
STAD	TCGA-CG-5723-01	SMAD9	ENST00000350148.5	chr13	37427555:37427812:37439673:37439895:37446794:37447052,	37439674	37439895	37439797	37439797	Nonsense_Mutation	G	A	p.R294*
STAD	TCGA-CG-5723-01	IL12RB1	ENST00000322153.7	chr19	18181371:18182143:18182921:18183159:18184326:18184409,	18182922	18183159	18183096	18183096	Nonsense_Mutation	G	A	p.R283*
STAD	TCGA-CG-5723-01	HNF4A	ENST00000316673.4,ENST00000372920.1,ENST00000316099.4	chr20	43052657:43052894:43056974:43057127:43058162:43058311,	43056975	43057127	43057109	43057109	Nonsense_Mutation	C	T	p.R422*
STAD	TCGA-CG-5723-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5617148:5617271:5620204:5620409:5624263:5624718,	5620205	5620409	5620258	5620258	Nonsense_Mutation	G	A	p.R885*
STAD	TCGA-CG-5723-01	SOBP	ENST00000317357.5	chr6	107854662:107854814:107908283:107908379:107954717:107956673,	107908284	107908379	107908293	107908293	Nonsense_Mutation	G	T	p.E195*
STAD	TCGA-CG-5723-01	FAM166B	ENST00000447837.1,ENST00000399742.2	chr9	35562871:35563077:35563162:35563386:35563763:35563871,	35563163	35563386	35563290	35563290	Nonsense_Mutation	C	T	p.W53*
STAD	TCGA-CG-5724-01	HACL1	ENST00000456194.2,ENST00000435217.2,ENST00000422591.1,ENST00000383779.4,ENST00000321169.5,ENST00000451445.2	chr3	15609938:15610093:15613174:15613276:15614665:15614749,	15613175	15613276	15613246	15613246	Nonsense_Mutation	G	A	p.Q342*
STAD	TCGA-CG-5726-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256510	19256510	Nonsense_Mutation	G	A	p.R183*
STAD	TCGA-CG-5726-01	PHF11	ENST00000378319.3,ENST00000426879.1,ENST00000488958.1,ENST00000495157.1,ENST00000465045.1,ENST00000357596.3,ENST00000488605.1	chr13	50096178:50096243:50097310:50097377:50098220:50098352,	50097311	50097377	50097359	50097359	Nonsense_Mutation	G	T	p.E207*
STAD	TCGA-CG-5726-01	PRMT5	ENST00000553897.1	chr14	23397334:23397420:23397705:23397824:23398460:23398577,23397334:23397420:23397705:23397824:23398427:23398560,23397334:23397420:23397705:23397824:23398375:23398565,23396734:23396823:23397705:23397824:23398460:23398577,	23397706	23397824	23397733	23397733	Nonsense_Mutation	G	A	p.R68*
STAD	TCGA-CG-5726-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
STAD	TCGA-CG-5726-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170413696:170413807:170416896:170417295:170419734:170419860,	170416897	170417295	170417153	170417153	Nonsense_Mutation	G	A	p.R239*
STAD	TCGA-CG-5726-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208841408	208841408	Nonsense_Mutation	G	A	p.R505*
STAD	TCGA-CG-5726-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903916	5903916	Nonsense_Mutation	C	T	p.Q376*
STAD	TCGA-CG-5726-01	HDDC2	ENST00000608295.1	chr6	125598247:125598386:125619795:125619962:125621683:125621805,	125619796	125619962	125619868	125619868	Nonsense_Mutation	G	A	p.R101*
STAD	TCGA-CG-5726-01	HDDC2	ENST00000398153.2	chr6	125613986:125614055:125619859:125619962:125621683:125621805,	125619860	125619962	125619868	125619868	Nonsense_Mutation	G	A	p.R101*
STAD	TCGA-CG-5727-01	PRMT2	ENST00000355680.3,ENST00000397638.2,ENST00000397637.1	chr21	48069609:48069651:48081711:48081848:48083294:48083466,48080744:48080874:48081711:48081848:48083294:48083466,	48081712	48081848	48081793	48081793	Nonsense_Mutation	C	T	p.Q348*
STAD	TCGA-CG-5727-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48081793	48081793	Nonsense_Mutation	C	T	p.Q348*
STAD	TCGA-CG-5727-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797371	75797371	Nonsense_Mutation	G	A	p.R3035*
STAD	TCGA-CG-5728-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000567239.1	chr16	69660305:69660431:69680930:69681489:69687138:69687331,	69680931	69681489	69681374	69681374	Nonsense_Mutation	C	T	p.R215*
STAD	TCGA-CG-5728-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883674	4883674	Nonsense_Mutation	G	A	p.R315*
STAD	TCGA-CG-5728-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285159	217285159	Nonsense_Mutation	C	T	p.R334*
STAD	TCGA-CG-5728-01	GTF2E1	ENST00000283875.5	chr3	120461608:120461641:120469369:120469847:120489574:120489776,	120469370	120469847	120469477	120469477	Nonsense_Mutation	T	G	p.Y26*
STAD	TCGA-CG-5728-01	TNIK	ENST00000538048.1,ENST00000460047.1,ENST00000488470.1,ENST00000284483.8,ENST00000436636.2	chr3	170855979:170856168:170857258:170857345:170858187:170858298,	170857259	170857345	170857333	170857333	Nonsense_Mutation	G	A	p.R449*
STAD	TCGA-CG-5728-01	ALDH1A1	ENST00000376939.1,ENST00000493113.1,ENST00000419959.1,ENST00000446946.1,ENST00000482210.1	chr9	75545794:75545935:75555063:75555168:75567850:75567878,	75555064	75555168	75555148	75555148	Nonsense_Mutation	C	T	p.W29*
STAD	TCGA-CG-5732-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65474876:65474983:65475946:65476172:65478681:65478821,	65475947	65476172	65476001	65476001	Nonsense_Mutation	G	T	p.E912*
STAD	TCGA-CG-5733-01	TMEM63A	ENST00000366835.3,ENST00000487971.1	chr1	226044404:226044439:226044610:226044717:226046895:226047049,	226044611	226044717	226044616	226044616	Nonsense_Mutation	C	T	p.W493*
STAD	TCGA-CG-5733-01	ACVR1B	ENST00000257963.4,ENST00000541224.1,ENST00000542485.1	chr12	52380601:52380726:52385646:52385777:52387768:52388001,	52385647	52385777	52385715	52385715	Nonsense_Mutation	C	T	p.R444*
STAD	TCGA-CG-5733-01	ACSM2A	ENST00000575690.1,ENST00000219054.6,ENST00000571894.1,ENST00000576361.1	chr16	20462932:20463003:20471428:20471613:20476838:20476978,20463753:20463788:20471428:20471613:20476838:20476978,	20471429	20471613	20471449	20471449	Nonsense_Mutation	C	T	p.R5*
STAD	TCGA-CG-5733-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48221300:48221338:48226430:48226628:48227789:48227893,	48226431	48226628	48226616	48226616	Nonsense_Mutation	G	A	p.R841*
STAD	TCGA-CG-5733-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000409769.2,ENST00000473565.1,ENST00000409403.2	chr2	201721613:201721708:201722440:201722607:201722695:201722812,	201722441	201722607	201722492	201722492	Nonsense_Mutation	G	A	p.R261*
STAD	TCGA-CG-5733-01	CLK1	ENST00000461981.1	chr2	201721404:201721534:201721613:201722607:201722695:201722812,	201721614	201722607	201722492	201722492	Nonsense_Mutation	G	A	p.R261*
STAD	TCGA-CG-5733-01	PANK2	ENST00000495692.1,ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3893104:3893281:3897573:3897697:3899317:3899436,	3897574	3897697	3897602	3897602	Nonsense_Mutation	C	T	p.R481*
STAD	TCGA-CG-5733-01	PPM1F	ENST00000407142.1,ENST00000538191.1,ENST00000397495.4,ENST00000263212.5	chr22	22279941:22280035:22285519:22285663:22287762:22287951,	22285520	22285663	22285570	22285570	Nonsense_Mutation	G	A	p.Q281*
STAD	TCGA-CG-5733-01	COMMD8	ENST00000381571.4	chr4	47452884:47453682:47455075:47455231:47458593:47458746,	47455076	47455231	47455198	47455198	Nonsense_Mutation	G	A	p.R137*
STAD	TCGA-CG-5733-01	BMP2K	ENST00000502871.1,ENST00000389010.3,ENST00000335016.5	chr4	79747190:79747309:79754735:79754841:79763538:79763681,	79754736	79754841	79754838	79754838	Nonsense_Mutation	C	T	p.R134*
STAD	TCGA-CG-5733-01	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103273373:103273487:103274142:103274298:103276701:103276786,	103274143	103274298	103274148	103274148	Nonsense_Mutation	C	A	p.G2613*
STAD	TCGA-CG-5734-01	NIT2	ENST00000480073.1,ENST00000472392.1	chr3	100057937:100058049:100058658:100058798:100059916:100059987,	100058659	100058798	100058731	100058731	Nonsense_Mutation	C	T	p.Q67*
STAD	TCGA-CG-5734-01	NIT2	ENST00000465368.1,ENST00000497785.1,ENST00000394140.4,ENST00000460317.1,ENST00000478856.1	chr3	100057937:100058049:100058658:100058779:100059916:100059987,	100058659	100058779	100058731	100058731	Nonsense_Mutation	C	T	p.Q67*
STAD	TCGA-CG-5734-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135205649	135205649	Nonsense_Mutation	G	A	p.Q446*
STAD	TCGA-D7-5577-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101054	27101054	Nonsense_Mutation	C	T	p.R1446*
STAD	TCGA-D7-5577-01	MYO3A	ENST00000265944.5	chr10	26465629:26465774:26482133:26482240:26490193:26490234,	26482134	26482240	26482178	26482178	Nonsense_Mutation	C	T	p.R1495*
STAD	TCGA-D7-5577-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45849964:45850125:45852969:45853209:45855945:45856024,	45852970	45853209	45852980	45852980	Nonsense_Mutation	G	T	p.C1062*
STAD	TCGA-D7-5578-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735889	4735889	Nonsense_Mutation	C	A	p.E727*
STAD	TCGA-D7-5578-01	MYO5C	ENST00000261839.7	chr15	52531929:52532076:52534244:52534410:52536552:52536715,	52534245	52534410	52534277	52534277	Nonsense_Mutation	G	A	p.R842*
STAD	TCGA-D7-5578-01	HEPACAM2	ENST00000440868.1,ENST00000492616.1	chr7	92825140:92825214:92826553:92826591:92826797:92826923,	92826554	92826591	92826556	92826556	Nonsense_Mutation	G	T	p.S400*
STAD	TCGA-D7-6519-01	PIWIL1	ENST00000245255.3	chr12	130840097:130840212:130841462:130841650:130842025:130842098,	130841463	130841650	130841471	130841471	Nonsense_Mutation	C	A	p.Y471*
STAD	TCGA-D7-6520-01	RABGGTB	ENST00000471759.1,ENST00000319942.3,ENST00000535300.1,ENST00000496055.1	chr1	76257145:76257256:76257865:76257991:76259768:76259918,	76257866	76257991	76257946	76257946	Nonsense_Mutation	T	A	p.C220*
STAD	TCGA-D7-6521-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056214	27056214	Nonsense_Mutation	C	T	p.Q404*
STAD	TCGA-D7-6521-01	NAP1L1	ENST00000552147.1,ENST00000542344.1	chr12	76448827:76448870:76449812:76449938:76453577:76453658,	76449813	76449938	76449896	76449896	Nonsense_Mutation	C	A	p.E159*
STAD	TCGA-D7-6521-01	NAP1L1	ENST00000535020.2,ENST00000547529.2,ENST00000547773.1,ENST00000393263.3,ENST00000544816.1,ENST00000549596.1,ENST00000548273.1,ENST00000548044.1,ENST00000551992.1,ENST00000261182.8,ENST00000552056.1	chr12	76448827:76448870:76449812:76449941:76453917:76454059,76448827:76448870:76449812:76449941:76453577:76453658,	76449813	76449941	76449896	76449896	Nonsense_Mutation	C	A	p.E159*
STAD	TCGA-D7-6521-01	PHEX	ENST00000379374.4,ENST00000535894.1,ENST00000418858.3	chrX	22245623:22245728:22263449:22263526:22265967:22266209,	22263450	22263526	22263519	22263519	Nonsense_Mutation	C	T	p.Q714*
STAD	TCGA-D7-6522-01	RGS6	ENST00000434263.2,ENST00000556437.1,ENST00000553530.1,ENST00000555571.1,ENST00000404301.2,ENST00000402788.2,ENST00000406236.4,ENST00000554474.1,ENST00000407322.4,ENST00000554782.1,ENST00000553525.1,ENST00000355512.6	chr14	72961859:72961970:72976861:72976987:72985058:72985245,	72976862	72976987	72976881	72976881	Nonsense_Mutation	C	T	p.R329*
STAD	TCGA-D7-6524-01	PKN2	ENST00000316005.7,ENST00000370513.5,ENST00000370505.3,ENST00000370521.3	chr1	89225904:89226059:89236034:89236152:89237103:89237249,	89236035	89236152	89236101	89236101	Nonsense_Mutation	C	T	p.R191*
STAD	TCGA-D7-6524-01	TGFBR1	ENST00000374990.2	chr9	101867431:101867584:101891136:101891382:101894790:101895008,101867431:101867584:101891136:101891382:101900140:101900346,	101891137	101891382	101891357	101891357	Nonsense_Mutation	C	A	p.C106*
STAD	TCGA-D7-6525-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
STAD	TCGA-D7-6526-01	EGFLAM	ENST00000397210.3,ENST00000354891.3,ENST00000508868.1	chr5	38445780:38445804:38448402:38448481:38451416:38451560,	38448403	38448481	38448449	38448449	Nonsense_Mutation	C	A	p.Y845*
STAD	TCGA-D7-6526-01	EGFLAM	ENST00000506135.1	chr5	38445780:38445804:38448402:38448521:38451416:38451560,	38448403	38448521	38448449	38448449	Nonsense_Mutation	C	A	p.Y845*
STAD	TCGA-D7-6527-01	CHCHD2	ENST00000473095.1	chr7	56170559:56170704:56171918:56172168:56174056:56174124,	56171919	56172168	56171922	56171922	Nonsense_Mutation	G	T	p.Y99*
STAD	TCGA-D7-6528-01	SLC44A3	ENST00000530397.1,ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95294048:95294142:95303266:95303427:95305503:95305593,	95303267	95303427	95303425	95303425	Nonsense_Mutation	T	G	p.L223*
STAD	TCGA-D7-6528-01	FUT10	ENST00000327671.5,ENST00000524021.1,ENST00000518672.1	chr8	33230161:33230322:33246480:33247316:33310733:33311028,	33246481	33247316	33246606	33246606	Nonsense_Mutation	G	A	p.R363*
STAD	TCGA-D7-6815-01	ZC3H18	ENST00000569435.1	chr16	88636885:88636974:88643517:88643783:88653007:88653092,	88643518	88643783	88643772	88643772	Nonsense_Mutation	C	T	p.Q81*
STAD	TCGA-D7-6815-01	ZC3H18	ENST00000452588.2	chr16	88636885:88636974:88643517:88644134:88653007:88653092,	88643518	88644134	88643772	88643772	Nonsense_Mutation	C	T	p.Q81*
STAD	TCGA-D7-6817-01	PREX2	ENST00000529398.1	chr8	68864723:68864770:68930080:68930152:68931783:68931906,	68930081	68930152	68930132	68930133	Nonsense_Mutation	GT	TA	p.V65*
STAD	TCGA-D7-6822-01	ACSL3	ENST00000392066.3	chr2	223752547:223752606:223773450:223773868:223781036:223781214,	223773451	223773868	223773616	223773616	Nonsense_Mutation	T	G	p.Y42*
STAD	TCGA-D7-8575-01	A2M	ENST00000318602.7,ENST00000404455.2	chr12	9264754:9264807:9264972:9265132:9265955:9266135,	9264973	9265132	9264996	9264996	Nonsense_Mutation	G	T	p.S136*
STAD	TCGA-D7-8579-01	TNFAIP3	ENST00000237289.4	chr6	138195981:138196172:138196824:138196972:138197132:138197303,	138196825	138196972	138196897	138196897	Nonsense_Mutation	C	T	p.Q187*
STAD	TCGA-D7-A4YT-01	GPAM	ENST00000369425.1,ENST00000423155.1,ENST00000348367.4	chr10	113932727:113932824:113933456:113933603:113935357:113935471,	113933457	113933603	113933596	113933596	Nonsense_Mutation	C	A	p.E141*
STAD	TCGA-D7-A4YT-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113704991	113704991	Nonsense_Mutation	C	A	p.E201*
STAD	TCGA-D7-A4YT-01	PRKCG	ENST00000540413.1,ENST00000263431.3	chr19	54407888:54407996:54409570:54409711:54409960:54410145,	54409571	54409711	54409676	54409676	Nonsense_Mutation	C	T	p.R624*
STAD	TCGA-D7-A4YT-01	CCDC74B	ENST00000409943.3,ENST00000392984.3,ENST00000310463.6	chr2	130897595:130897669:130897751:130897944:130898730:130898869,	130897752	130897944	130897829	130897829	Nonsense_Mutation	G	A	p.R267*
STAD	TCGA-D7-A4YT-01	ARHGAP24	ENST00000506421.1,ENST00000503995.1	chr4	86396638:86396712:86491674:86491874:86643037:86643125,	86491675	86491874	86491782	86491782	Nonsense_Mutation	G	T	p.G30*
STAD	TCGA-D7-A4YT-01	INTU	ENST00000503626.1,ENST00000503952.1,ENST00000335251.6	chr4	128629725:128629823:128632067:128632257:128635090:128635248,	128632068	128632257	128632186	128632186	Nonsense_Mutation	C	T	p.Q830*
STAD	TCGA-D7-A4YU-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214816265	214816265	Nonsense_Mutation	C	A	p.C1528*
STAD	TCGA-D7-A4YU-01	STK24	ENST00000376554.4	chr13	99105168:99105463:99109421:99109558:99112625:99112694,99105168:99105463:99109421:99109558:99114027:99114151,	99109422	99109558	99109504	99109504	Nonsense_Mutation	G	A	p.R405*
STAD	TCGA-D7-A4YU-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
STAD	TCGA-D7-A4YV-01	SSX2IP	ENST00000422026.1	chr1	85136328:85136498:85136859:85136991:85155836:85155972,85136328:85136498:85136859:85136991:85156053:85156127,85136328:85136498:85136859:85136991:85156356:85156440,	85136860	85136991	85136860	85136860	Nonsense_Mutation	C	A	p.E15*
STAD	TCGA-D7-A4YV-01	TPR	ENST00000367478.4	chr1	186310159:186310291:186310383:186310521:186312457:186312605,	186310384	186310521	186310500	186310500	Nonsense_Mutation	G	A	p.Q1258*
STAD	TCGA-D7-A4YV-01	LAD1	ENST00000367313.3,ENST00000391967.2	chr1	201350334:201351021:201351379:201351454:201351780:201351867,	201351380	201351454	201351409	201351409	Nonsense_Mutation	G	A	p.Q507*
STAD	TCGA-D7-A4YV-01	PATL1	ENST00000300146.9	chr11	59418226:59418286:59419016:59419114:59419936:59420060,	59419017	59419114	59419061	59419061	Nonsense_Mutation	G	A	p.R494*
STAD	TCGA-D7-A4YV-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35168135:35168207:35174702:35174840:35176725:35176935,	35174703	35174840	35174732	35174732	Nonsense_Mutation	G	A	p.R1046*
STAD	TCGA-D7-A4YV-01	ENOSF1	ENST00000340116.7	chr18	677344:677444:677742:677872:678695:678737,677344:677444:677742:677872:683245:683380,	677743	677872	677824	677824	Nonsense_Mutation	G	A	p.Q323*
STAD	TCGA-D7-A4YV-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107459935	107459935	Nonsense_Mutation	G	A	p.Q167*
STAD	TCGA-D7-A4YV-01	NOP58	ENST00000433543.2	chr2	203155847:203155993:203157499:203157626:203160396:203160560,203155847:203155993:203157499:203157626:203162101:203162236,	203157500	203157626	203157521	203157521	Nonsense_Mutation	C	T	p.R268*
STAD	TCGA-D7-A4YV-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547357	165547357	Nonsense_Mutation	C	A	p.E489*
STAD	TCGA-D7-A4YV-01	TMCO6	ENST00000252100.6,ENST00000510336.1,ENST00000514449.1,ENST00000394671.3	chr5	140021249:140021365:140021454:140021638:140021899:140021998,	140021455	140021638	140021628	140021628	Nonsense_Mutation	C	G	p.S163*
STAD	TCGA-D7-A4YV-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288600	33288600	Nonsense_Mutation	G	A	p.R318*
STAD	TCGA-D7-A4YV-01	GUSB	ENST00000304895.4,ENST00000345660.6,ENST00000478118.1	chr7	65444464:65444528:65444713:65444898:65445210:65445392,	65444714	65444898	65444796	65444796	Nonsense_Mutation	G	A	p.R167*
STAD	TCGA-D7-A4YV-01	CPA4	ENST00000493259.1,ENST00000222482.4,ENST00000445470.2	chr7	129946626:129946737:129948146:129948237:129950626:129950826,	129948147	129948237	129948150	129948150	Nonsense_Mutation	C	T	p.R236*
STAD	TCGA-D7-A4YX-01	NTNG1	ENST00000370067.1,ENST00000370074.4,ENST00000370070.2,ENST00000370071.2,ENST00000370065.1,ENST00000370068.1,ENST00000294649.4,ENST00000542803.1,ENST00000370061.3,ENST00000370073.2,ENST00000370066.1,ENST00000370072.3	chr1	107691215:107691461:107866903:107867544:107937775:107937948,	107866904	107867544	107867165	107867165	Nonsense_Mutation	C	T	p.R170*
STAD	TCGA-D7-A4YY-01	MGAT4A	ENST00000393487.1,ENST00000409391.1,ENST00000484936.1	chr2	99291497:99291638:99294766:99294934:99342701:99343030,	99294767	99294934	99294914	99294914	Nonsense_Mutation	G	A	p.R39*
STAD	TCGA-D7-A4YY-01	LRP1B	ENST00000389484.3	chr2	141747100:141747226:141751563:141751704:141762903:141763026,	141751564	141751704	141751623	141751623	Nonsense_Mutation	C	T	p.W862*
STAD	TCGA-D7-A4Z0-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577603	57577603	Nonsense_Mutation	C	T	p.R820*
STAD	TCGA-EQ-5647-01	ADAT1	ENST00000307921.3,ENST00000566445.1	chr16	75642121:75642221:75642740:75642886:75646140:75646759,	75642741	75642886	75642762	75642762	Nonsense_Mutation	G	A	p.R390*
STAD	TCGA-EQ-8122-01	ALPL	ENST00000425315.2,ENST00000374832.1,ENST00000374840.3,ENST00000539907.1,ENST00000374829.1,ENST00000374830.1,ENST00000540617.1	chr1	21902225:21902417:21903014:21903134:21903875:21904224,	21903015	21903134	21903107	21903107	Nonsense_Mutation	C	T	p.R428*
STAD	TCGA-EQ-8122-01	WDR59	ENST00000562331.1,ENST00000536050.1,ENST00000568323.1,ENST00000262144.6,ENST00000563111.1,ENST00000568462.1	chr16	74985355:74985441:74990372:74990508:74999670:74999708,	74990373	74990508	74990459	74990459	Nonsense_Mutation	G	A	p.R52*
STAD	TCGA-EQ-8122-01	VPS53	ENST00000573028.1,ENST00000575207.1,ENST00000401468.3,ENST00000574029.1,ENST00000291074.5,ENST00000446250.2,ENST00000389040.5,ENST00000571805.1	chr17	602582:602620:613772:613853:617862:617949,	613773	613853	613826	613826	Nonsense_Mutation	G	A	p.R39*
STAD	TCGA-F1-6177-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482172	150482172	Nonsense_Mutation	C	T	p.R53*
STAD	TCGA-F1-6177-01	ECM1	ENST00000369049.4	chr1	150482006:150482057:150482136:150482232:150482310:150482478,	150482137	150482232	150482172	150482172	Nonsense_Mutation	C	T	p.R53*
STAD	TCGA-F1-6177-01	ECM1	ENST00000346569.6,ENST00000369047.4	chr1	150482006:150482057:150482136:150482238:150482397:150482478,	150482137	150482238	150482172	150482172	Nonsense_Mutation	C	T	p.R53*
STAD	TCGA-F1-6177-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735156	155735156	Nonsense_Mutation	C	A	p.E1370*
STAD	TCGA-F1-6177-01	RRP8	ENST00000533907.1	chr11	6621898:6622005:6622155:6622832:6623081:6623445,	6622156	6622832	6622581	6622581	Nonsense_Mutation	G	A	p.R239*
STAD	TCGA-F1-6177-01	RRP8	ENST00000254605.6	chr11	6622155:6622285:6622378:6622832:6623081:6623445,	6622379	6622832	6622581	6622581	Nonsense_Mutation	G	A	p.R239*
STAD	TCGA-F1-6177-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30001145	30001145	Nonsense_Mutation	G	A	p.R1490*
STAD	TCGA-F1-6177-01	PHLPP2	ENST00000567016.1,ENST00000393524.2,ENST00000568954.1,ENST00000356272.3,ENST00000360429.3,ENST00000538126.1	chr16	71724421:71724612:71736500:71736634:71748414:71748704,	71736501	71736634	71736615	71736615	Nonsense_Mutation	G	A	p.R102*
STAD	TCGA-F1-6177-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883674	4883674	Nonsense_Mutation	G	A	p.R315*
STAD	TCGA-F1-6177-01	SPAG9	ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1,ENST00000511312.2	chr17	49054468:49054582:49057106:49057278:49059884:49060033,	49057107	49057278	49057239	49057239	Nonsense_Mutation	G	A	p.R1093*
STAD	TCGA-F1-6177-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15674666:15674765:15676541:15676675:15679346:15679480,	15676542	15676675	15676570	15676570	Nonsense_Mutation	G	A	p.R207*
STAD	TCGA-F1-6177-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905*
STAD	TCGA-F1-6177-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905*
STAD	TCGA-F1-6177-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4825499:4825604:4829630:4829823:4836748:4836871,	4829631	4829823	4829715	4829715	Nonsense_Mutation	C	T	p.R2186*
STAD	TCGA-F1-6177-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998018	144998018	Nonsense_Mutation	G	A	p.R2164*
STAD	TCGA-F1-6177-01	VLDLR	ENST00000382099.2,ENST00000382100.3	chr9	2645573:2645745:2646333:2646552:2647473:2647592,	2646334	2646552	2646515	2646515	Nonsense_Mutation	C	T	p.R556*
STAD	TCGA-F1-6874-01	MTMR11	ENST00000369140.3,ENST00000439741.2	chr1	149902683:149902857:149903151:149903318:149903835:149903906,	149903152	149903318	149903217	149903217	Nonsense_Mutation	G	A	p.R409*
STAD	TCGA-F1-6874-01	NVL	ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000469075.1,ENST00000281701.6	chr1	224437913:224438020:224455735:224455835:224463040:224463160,	224455736	224455835	224455820	224455820	Nonsense_Mutation	G	A	p.R700*
STAD	TCGA-F1-6874-01	SIPA1L2	ENST00000262861.4,ENST00000308942.4,ENST00000366630.1	chr1	232579347:232579431:232581274:232581532:232596632:232596907,	232581275	232581532	232581405	232581405	Nonsense_Mutation	G	A	p.Q1075*
STAD	TCGA-F1-6874-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46431825:46431918:46439462:46439602:46455023:46455178,	46439463	46439602	46439470	46439470	Nonsense_Mutation	G	A	p.R1037*
STAD	TCGA-F1-6874-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203383544:203383775:203384809:203384924:203395516:203395677,	203384810	203384924	203384918	203384918	Nonsense_Mutation	C	T	p.R321*
STAD	TCGA-F1-6874-01	RNF25	ENST00000295704.2,ENST00000463188.1,ENST00000473034.1	chr2	219529549:219529596:219529877:219529970:219530638:219530779,	219529878	219529970	219529955	219529955	Nonsense_Mutation	G	A	p.Q197*
STAD	TCGA-F1-6874-01	ATP9A	ENST00000402822.1,ENST00000338821.5	chr20	50342357:50342471:50346372:50346517:50384840:50384867,	50346373	50346517	50346505	50346505	Nonsense_Mutation	C	T	p.W27*
STAD	TCGA-F1-6874-01	MLF1	ENST00000478894.2,ENST00000482628.1,ENST00000355893.5,ENST00000469452.1,ENST00000471745.1,ENST00000359117.5,ENST00000484955.1,ENST00000392822.3,ENST00000497004.1,ENST00000491767.1	chr3	158317802:158317962:158320595:158320728:158322885:158322981,	158320596	158320728	158320655	158320655	Nonsense_Mutation	C	T	p.R210*
STAD	TCGA-F1-6874-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54319086:54319300:54324819:54324957:54325468:54325569,	54324820	54324957	54324899	54324899	Nonsense_Mutation	C	T	p.R527*
STAD	TCGA-F1-6874-01	POLR1C	ENST00000481352.2,ENST00000372389.3,ENST00000304004.3	chr6	43488069:43488165:43488362:43488512:43488669:43488786,	43488363	43488512	43488475	43488475	Nonsense_Mutation	C	A	p.C256*
STAD	TCGA-F1-6874-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923693	158923693	Nonsense_Mutation	C	T	p.Q1000*
STAD	TCGA-F1-6874-01	CRISPLD1	ENST00000517786.1,ENST00000262207.4,ENST00000523524.1	chr8	75927046:75927147:75928799:75928940:75929115:75929176,	75928800	75928940	75928931	75928931	Nonsense_Mutation	C	T	p.Q287*
STAD	TCGA-F1-A448-01	POLR2F	ENST00000407936.1,ENST00000606538.1,ENST00000443002.1,ENST00000405557.1,ENST00000484894.1,ENST00000470701.1,ENST00000442738.2	chr22	38352779:38352908:38355352:38355483:38363105:38363177,38352779:38352849:38355352:38355483:38363105:38363177,	38355353	38355483	38355392	38355392	Nonsense_Mutation	C	T	p.R44*
STAD	TCGA-F1-A448-01	ITIH1	ENST00000428133.1,ENST00000405128.3,ENST00000540715.1,ENST00000542827.1,ENST00000273283.2,ENST00000537050.1	chr3	52823668:52823870:52824764:52824937:52825532:52825615,	52824765	52824937	52824844	52824844	Nonsense_Mutation	C	T	p.R801*
STAD	TCGA-F1-A448-01	TMEM39A	ENST00000319172.5	chr3	119156780:119156950:119165864:119166019:119171293:119171377,	119165865	119166019	119165905	119165905	Nonsense_Mutation	G	A	p.R179*
STAD	TCGA-F1-A448-01	TTK	ENST00000230510.3,ENST00000369798.2,ENST00000509894.1	chr6	80721602:80721697:80722995:80723083:80724179:80724303,	80722996	80723083	80723018	80723018	Nonsense_Mutation	C	T	p.R307*
STAD	TCGA-F1-A448-01	FUCA2	ENST00000438118.2	chr6	143818525:143818634:143823068:143823259:143828373:143828561,	143823069	143823259	143823103	143823103	Nonsense_Mutation	G	A	p.R374*
STAD	TCGA-FP-7829-01	PYGL	ENST00000530336.2,ENST00000532462.1,ENST00000216392.7	chr14	51398390:51398494:51401824:51401903:51404453:51404555,	51401825	51401903	51401876	51401876	Nonsense_Mutation	C	A	p.E125*
STAD	TCGA-FP-7829-01	LYPD6B	ENST00000409029.1,ENST00000409642.3,ENST00000498249.1,ENST00000280115.7,ENST00000409876.1	chr2	150061766:150061918:150064827:150064926:150069505:150069636,	150064828	150064926	150064896	150064896	Nonsense_Mutation	C	T	p.R100*
STAD	TCGA-FP-7829-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659260	86659260	Nonsense_Mutation	A	T	p.K517*
STAD	TCGA-FP-7916-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32328198:32328393:32360216:32360399:32361250:32361403,	32360217	32360399	32360399	32360399	Nonsense_Mutation	C	A	p.E1914*
STAD	TCGA-FP-7998-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101252	27101252	Nonsense_Mutation	C	T	p.Q1512*
STAD	TCGA-FP-7998-01	PPP3CA	ENST00000394854.3,ENST00000394853.4,ENST00000323055.6	chr4	102030110:102030235:102117072:102117273:102267895:102267953,	102117073	102117273	102117123	102117123	Nonsense_Mutation	G	C	p.S70*
STAD	TCGA-FP-8099-01	SIRT1	ENST00000432464.1,ENST00000212015.6,ENST00000406900.1,ENST00000403579.1	chr10	69669012:69669199:69672230:69672788:69676021:69678143,	69672231	69672788	69672419	69672419	Nonsense_Mutation	C	T	p.R516*
STAD	TCGA-FP-8211-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351872	156351872	Nonsense_Mutation	C	A	p.S331*
STAD	TCGA-FP-8211-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000475273.2,ENST00000356327.5,ENST00000440204.1,ENST00000342215.6,ENST00000498278.1	chr3	171443807:171443866:171451233:171451299:171452654:171452760,	171451234	171451299	171451290	171451291	Nonsense_Mutation	CC	AA	p.E184*
STAD	TCGA-FP-A4BE-01	EBNA1BP2	ENST00000236051.2,ENST00000463906.1,ENST00000431635.2	chr1	43632830:43632906:43634609:43634699:43636426:43636550,	43634610	43634699	43634636	43634636	Nonsense_Mutation	G	A	p.R171*
STAD	TCGA-FP-A4BE-01	AKNAD1	ENST00000369995.3,ENST00000370001.3,ENST00000357393.4	chr1	109377068:109377150:109377550:109377678:109380171:109380328,	109377551	109377678	109377642	109377642	Nonsense_Mutation	G	A	p.R525*
STAD	TCGA-FP-A4BE-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
STAD	TCGA-FP-A4BE-01	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000529364.1,ENST00000525724.1,ENST00000265686.3	chr11	67812513:67812569:67814899:67815039:67815113:67815265,	67814900	67815039	67815010	67815010	Nonsense_Mutation	C	T	p.R426*
STAD	TCGA-FP-A4BE-01	RACGAP1	ENST00000546786.1	chr12	50396054:50396083:50410413:50410502:50419180:50419221,50399140:50399175:50410413:50410502:50419180:50419221,50400216:50400419:50410413:50410502:50419180:50419221,50400216:50400419:50410413:50410502:50419110:50419183,50399140:50399175:50410413:50410502:50419110:50419183,	50410414	50410502	50410414	50410414	Nonsense_Mutation	G	A	p.Q29*
STAD	TCGA-FP-A4BE-01	RACGAP1	ENST00000548824.1	chr12	50400216:50400419:50410413:50410498:50419110:50419183,50400216:50400419:50410413:50410498:50419180:50419221,50400216:50400419:50410413:50410498:50419155:50419217,	50410414	50410498	50410414	50410414	Nonsense_Mutation	G	A	p.Q29*
STAD	TCGA-FP-A4BE-01	ZC3H13	ENST00000282007.3,ENST00000242848.4	chr13	46594583:46594692:46616298:46616410:46619089:46619199,	46616299	46616410	46616331	46616331	Nonsense_Mutation	G	A	p.R103*
STAD	TCGA-FP-A4BE-01	PPP2R5C	ENST00000555237.1,ENST00000445439.3,ENST00000334743.5,ENST00000328724.5,ENST00000557268.1,ENST00000350249.3,ENST00000422945.2	chr14	102368193:102368226:102375925:102376027:102378737:102378810,102372841:102372866:102375925:102376027:102378737:102378810,	102375926	102376027	102376002	102376002	Nonsense_Mutation	C	T	p.Q410*
STAD	TCGA-FP-A4BE-01	WDR59	ENST00000562331.1,ENST00000536050.1,ENST00000568323.1,ENST00000262144.6,ENST00000563111.1,ENST00000568462.1	chr16	74985355:74985441:74990372:74990508:74999670:74999708,	74990373	74990508	74990459	74990459	Nonsense_Mutation	G	A	p.R52*
STAD	TCGA-FP-A4BE-01	METTL4	ENST00000576251.1	chr18	2538451:2539144:2547353:2547528:2552693:2552763,	2547354	2547528	2547407	2547407	Nonsense_Mutation	C	A	p.E341*
STAD	TCGA-FP-A4BE-01	SEPT10	ENST00000397714.2,ENST00000334001.6,ENST00000415095.1,ENST00000437928.1,ENST00000545389.1,ENST00000356688.4,ENST00000397712.2	chr2	110303626:110303814:110310663:110310796:110321942:110322111,	110310664	110310796	110310708	110310708	Nonsense_Mutation	G	A	p.R373*
STAD	TCGA-FP-A4BE-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230663590:230663765:230663998:230664099:230666967:230667175,	230663999	230664099	230664071	230664071	Nonsense_Mutation	G	A	p.R1004*
STAD	TCGA-FP-A4BE-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37089049:37089174:37090007:37090100:37090394:37090508,	37090008	37090100	37090086	37090086	Nonsense_Mutation	C	T	p.R659*
STAD	TCGA-FP-A4BE-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000397991.4,ENST00000317104.7,ENST00000489671.1,ENST00000467072.1,ENST00000479040.1,ENST00000486111.1,ENST00000495310.1,ENST00000310282.6,ENST00000467667.1,ENST00000477292.1	chr3	141678641:141678682:141682653:141682805:141688914:141688983,	141682654	141682805	141682772	141682772	Nonsense_Mutation	G	A	p.R256*
STAD	TCGA-FP-A4BE-01	STK32B	ENST00000510398.1,ENST00000512636.1,ENST00000282908.5	chr4	5141631:5141687:5170025:5170177:5332946:5333120,	5170026	5170177	5170044	5170044	Nonsense_Mutation	C	T	p.R43*
STAD	TCGA-FP-A4BE-01	TNFRSF10C	ENST00000356864.3	chr8	22960433:22960694:22969232:22969338:22972169:22972283,	22969233	22969338	22969281	22969281	Nonsense_Mutation	C	T	p.Q37*
STAD	TCGA-FP-A4BE-01	ADAM7	ENST00000520720.1,ENST00000380789.1,ENST00000175238.6	chr8	24357690:24357769:24358302:24358408:24358989:24359089,	24358303	24358408	24358377	24358377	Nonsense_Mutation	C	T	p.R693*
STAD	TCGA-FP-A4BE-01	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1,ENST00000542215.1	chrX	41203282:41203381:41203491:41203652:41204432:41204577,	41203492	41203652	41203552	41203552	Nonsense_Mutation	C	T	p.Q309*
STAD	TCGA-FP-A4BF-01	DSN1	ENST00000438549.1	chr20	35396371:35396445:35399275:35399427:35402064:35402123,	35399276	35399427	35399407	35399407	Nonsense_Mutation	G	T	p.S75*
STAD	TCGA-FP-A4BF-01	DSN1	ENST00000373750.4,ENST00000447406.1,ENST00000426836.1,ENST00000373745.3	chr20	35396371:35396445:35399275:35399596:35402064:35402123,35396371:35396445:35399275:35399596:35399827:35399876,	35399276	35399596	35399407	35399407	Nonsense_Mutation	G	T	p.S75*
STAD	TCGA-FP-A4BF-01	DSN1	ENST00000480153.1	chr20	35396371:35396445:35399275:35399876:35402064:35402123,	35399276	35399876	35399407	35399407	Nonsense_Mutation	G	T	p.S75*
STAD	TCGA-HF-7132-01	TIMM17A	ENST00000484647.1,ENST00000478378.1	chr1	201924637:201924680:201926408:201926508:201926638:201926702,	201926409	201926508	201926416	201926416	Nonsense_Mutation	C	T	p.R12*
STAD	TCGA-HF-7132-01	PSME1	ENST00000559123.1,ENST00000558112.1,ENST00000206451.6,ENST00000382708.3,ENST00000561435.1,ENST00000560420.1	chr14	24606908:24607006:24607257:24607326:24607404:24607472,	24607258	24607326	24607279	24607279	Nonsense_Mutation	C	T	p.Q138*
STAD	TCGA-HF-7132-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41362664:41362745:41364046:41364256:41365625:41365693,	41364047	41364256	41364223	41364223	Nonsense_Mutation	G	A	p.R477*
STAD	TCGA-HF-7132-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72833925:72834028:72845475:72845676:72845803:72845937,	72845476	72845676	72845607	72845607	Nonsense_Mutation	G	A	p.Q1245*
STAD	TCGA-HF-7132-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463094	5463094	Nonsense_Mutation	G	A	p.R308*
STAD	TCGA-HF-7132-01	NOTUM	ENST00000409678.3	chr17	79912131:79912179:79913272:79913420:79914525:79914626,	79913273	79913420	79913388	79913388	Nonsense_Mutation	C	A	p.E341*
STAD	TCGA-HF-7132-01	SPRED2	ENST00000440972.1	chr2	65561762:65561907:65571852:65572030:65659095:65659218,	65571853	65572030	65571870	65571870	Nonsense_Mutation	G	A	p.R63*
STAD	TCGA-HF-7132-01	SNRNP200	ENST00000323853.5,ENST00000429650.1,ENST00000497539.1	chr2	96943276:96943453:96943544:96943688:96943974:96944096,	96943545	96943688	96943574	96943574	Nonsense_Mutation	G	A	p.Q1909*
STAD	TCGA-HF-7132-01	SERPINE2	ENST00000447280.2,ENST00000258405.4,ENST00000432738.1,ENST00000409840.3,ENST00000409304.1	chr2	224856519:224856717:224862831:224863059:224866358:224866639,	224862832	224863059	224863030	224863030	Nonsense_Mutation	T	A	p.K97*
STAD	TCGA-HF-7132-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47887640	47887640	Nonsense_Mutation	G	A	p.R237*
STAD	TCGA-HF-7132-01	PRKAR2A	ENST00000296446.8	chr3	48789021:48789151:48789608:48789750:48793811:48793877,48789017:48789151:48789608:48789750:48802436:48802511,	48789609	48789750	48789613	48789613	Nonsense_Mutation	G	T	p.C359*
STAD	TCGA-HF-7132-01	SNX4	ENST00000473417.1,ENST00000465505.2,ENST00000251775.4	chr3	125216677:125216827:125216902:125217038:125223466:125223588,	125216903	125217038	125216990	125216990	Nonsense_Mutation	C	T	p.W104*
STAD	TCGA-HF-7132-01	SPEF2	ENST00000509059.1,ENST00000282469.6,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35659151:35659309:35667173:35667361:35670160:35670329,	35667174	35667361	35667345	35667345	Nonsense_Mutation	C	T	p.R447*
STAD	TCGA-HF-7132-01	TPD52L1	ENST00000528193.1,ENST00000534199.1,ENST00000392483.2,ENST00000392482.2,ENST00000534000.1,ENST00000368402.5,ENST00000532429.1,ENST00000532978.1,ENST00000524679.1,ENST00000527711.1,ENST00000368388.2,ENST00000534368.1,ENST00000304877.13	chr6	125541223:125541339:125550263:125550412:125569427:125569506,	125550264	125550412	125550288	125550288	Nonsense_Mutation	C	T	p.R54*
STAD	TCGA-HF-7132-01	TFB1M	ENST00000367166.4	chr6	155578806:155579042:155581406:155581534:155606291:155606333,155579110:155579216:155581406:155581534:155606291:155606333,	155581407	155581534	155581417	155581417	Nonsense_Mutation	G	A	p.R262*
STAD	TCGA-HF-7132-01	TFB1M	ENST00000495806.1	chr6	155579110:155579216:155581406:155581702:155606291:155606333,	155581407	155581702	155581417	155581417	Nonsense_Mutation	G	A	p.R262*
STAD	TCGA-HF-7132-01	SEMA3A	ENST00000436949.1,ENST00000265362.4	chr7	83689780:83689874:83739785:83739905:83758438:83758501,	83739786	83739905	83739842	83739842	Nonsense_Mutation	C	A	p.G133*
STAD	TCGA-HF-7132-01	PRKRIP1	ENST00000462601.1,ENST00000482549.1,ENST00000397912.3,ENST00000482465.1,ENST00000496391.1,ENST00000469763.1	chr7	102039994:102040095:102045044:102045130:102065460:102065893,102039994:102040095:102045044:102045130:102047880:102047945,	102045045	102045130	102045105	102045105	Nonsense_Mutation	C	T	p.Q123*
STAD	TCGA-HF-7136-01	SIK2	ENST00000304987.3	chr11	111558724:111558886:111571609:111571734:111572175:111572299,	111571610	111571734	111571702	111571702	Nonsense_Mutation	C	T	p.Q191*
STAD	TCGA-HJ-7597-01	LOXL4	ENST00000260702.3	chr10	100015333:100015496:100016536:100016704:100017406:100017561,	100016537	100016704	100016575	100016575	Nonsense_Mutation	G	A	p.R464*
STAD	TCGA-HJ-7597-01	SRD5A3	ENST00000505210.1	chr4	56212578:56212724:56225512:56225655:56235998:56236142,	56225513	56225655	56225592	56225592	Nonsense_Mutation	G	T	p.G101*
STAD	TCGA-HU-8249-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17081700:17081843:17085906:17086068:17086811:17086878,	17085907	17086068	17085975	17085975	Nonsense_Mutation	G	A	p.R715*
STAD	TCGA-HU-8602-01	RERE	ENST00000337907.3,ENST00000377464.1,ENST00000400907.2,ENST00000400908.2	chr1	8425939:8426034:8482786:8482867:8525984:8526083,	8482787	8482867	8482843	8482843	Nonsense_Mutation	G	A	p.Q410*
STAD	TCGA-HU-8602-01	ACOT11	ENST00000371316.3,ENST00000343744.2,ENST00000481208.1	chr1	55062936:55063088:55064968:55065088:55066941:55067086,	55064969	55065088	55065021	55065021	Nonsense_Mutation	C	T	p.R273*
STAD	TCGA-HU-8602-01	IFI16	ENST00000483916.1	chr1	159015086:159015254:159021468:159023514:159024610:159024914,159019221:159019389:159021468:159023514:159024610:159024914,	159021469	159023514	159021772	159021772	Nonsense_Mutation	C	T	p.R601*
STAD	TCGA-HU-8602-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000368132.3,ENST00000295809.7	chr1	159019221:159019389:159021468:159021888:159023322:159023514,	159021469	159021888	159021772	159021772	Nonsense_Mutation	C	T	p.R601*
STAD	TCGA-HU-8602-01	USP47	ENST00000399455.2,ENST00000539466.1,ENST00000527733.1,ENST00000339865.5	chr11	11952242:11952298:11954550:11954663:11955377:11955482,	11954551	11954663	11954637	11954637	Nonsense_Mutation	C	T	p.R600*
STAD	TCGA-HU-8602-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21395842:21396017:21396270:21396428:21401205:21401318,	21396271	21396428	21396422	21396422	Nonsense_Mutation	G	A	p.R283*
STAD	TCGA-HU-8602-01	ENOX1	ENST00000261488.6,ENST00000540032.1,ENST00000412891.1	chr13	43896519:43896637:43900554:43900661:43918673:43918886,	43900555	43900661	43900656	43900656	Nonsense_Mutation	G	A	p.Q348*
STAD	TCGA-HU-8602-01	NPTN	ENST00000563691.1,ENST00000287226.8,ENST00000545878.1	chr15	73884348:73884478:73889362:73889710:73925465:73925562,	73889363	73889710	73889393	73889393	Nonsense_Mutation	G	A	p.R137*
STAD	TCGA-HU-8602-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75673953:75674046:75676604:75676778:75681992:75682162,	75676605	75676778	75676745	75676745	Nonsense_Mutation	G	A	p.Q1019*
STAD	TCGA-HU-8602-01	UPK1A	ENST00000222275.2	chr19	36164372:36164447:36166741:36166921:36168713:36168759,	36166742	36166921	36166831	36166831	Nonsense_Mutation	G	A	p.W186*
STAD	TCGA-HU-8602-01	WDR33	ENST00000436787.1,ENST00000322313.4	chr2	128484225:128484351:128520635:128520733:128522401:128522553,	128520636	128520733	128520648	128520648	Nonsense_Mutation	T	A	p.R238*
STAD	TCGA-HU-8602-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101881	168101881	Nonsense_Mutation	C	T	p.R1327*
STAD	TCGA-HU-8602-01	UPB1	ENST00000382760.2,ENST00000326010.5	chr22	24891209:24891475:24896074:24896246:24898093:24898181,	24896075	24896246	24896163	24896163	Nonsense_Mutation	C	T	p.Q65*
STAD	TCGA-HU-8602-01	SHROOM3	ENST00000296043.6	chr4	77675463:77676345:77677601:77678090:77680697:77680848,	77677602	77678090	77678005	77678005	Nonsense_Mutation	C	T	p.R1705*
STAD	TCGA-HU-8602-01	LAMB4	ENST00000205386.4,ENST00000388781.3,ENST00000388780.3,ENST00000422975.1	chr7	107669487:107669641:107671250:107671424:107674652:107674791,	107671251	107671424	107671340	107671340	Nonsense_Mutation	G	A	p.Q1635*
STAD	TCGA-HU-8604-01	RXFP2	ENST00000380314.1,ENST00000298386.2	chr13	32363258:32363330:32365942:32366172:32366814:32367225,	32365943	32366172	32365959	32365959	Nonsense_Mutation	C	T	p.R388*
STAD	TCGA-HU-8608-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256429	19256429	Nonsense_Mutation	T	A	p.K210*
STAD	TCGA-HU-A4G2-01	RNF175	ENST00000347063.4	chr4	154631276:154631641:154633626:154633728:154636680:154636814,	154633627	154633728	154633709	154633709	Nonsense_Mutation	G	A	p.R262*
STAD	TCGA-HU-A4G8-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078722	117078722	Nonsense_Mutation	G	A	p.Q165*
STAD	TCGA-HU-A4G8-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228401141:228401411:228401874:228402135:228402490:228402799,	228401875	228402135	228402120	228402120	Nonsense_Mutation	C	T	p.Q502*
STAD	TCGA-HU-A4G8-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659393	43659393	Nonsense_Mutation	C	T	p.R354*
STAD	TCGA-HU-A4G8-01	BAHD1	ENST00000560846.1,ENST00000561234.1,ENST00000416165.1	chr15	40754113:40754493:40756059:40756219:40756669:40756746,	40756060	40756219	40756081	40756081	Nonsense_Mutation	C	T	p.R613*
STAD	TCGA-HU-A4G8-01	EPB42	ENST00000441366.2,ENST00000300215.3,ENST00000540029.1,ENST00000567019.1,ENST00000563128.1	chr15	43494041:43494175:43495312:43495473:43498527:43498827,	43495313	43495473	43495432	43495432	Nonsense_Mutation	G	A	p.R554*
STAD	TCGA-HU-A4G8-01	ZNF750	ENST00000572562.1	chr17	80787804:80788753:80788894:80789362:80797802:80797898,	80788895	80789362	80789298	80789298	Nonsense_Mutation	G	A	p.Q345*
STAD	TCGA-HU-A4G8-01	ZKSCAN3	ENST00000377255.3	chr6	28318048:28318165:28327301:28327765:28329100:28329248,	28327302	28327765	28327511	28327511	Nonsense_Mutation	C	T	p.R50*
STAD	TCGA-HU-A4G8-01	FKBP15	ENST00000489645.1,ENST00000446284.1,ENST00000238256.3	chr9	115946974:115947084:115948528:115948643:115950072:115950179,	115948529	115948643	115948583	115948583	Nonsense_Mutation	G	A	p.Q482*
STAD	TCGA-HU-A4G8-01	PPP2R3B	ENST00000468169.1,ENST00000390665.3	chrX	302041:302131:302617:302666:306250:306361,	302618	302666	302619	302619	Nonsense_Mutation	G	A	p.R362*
STAD	TCGA-HU-A4G8-01	PPP2R3B	ENST00000484364.1	chrX	302041:302131:302617:302972:306250:306361,	302618	302972	302619	302619	Nonsense_Mutation	G	A	p.R362*
STAD	TCGA-HU-A4G9-01	PRKACB	ENST00000470673.1,ENST00000432111.1,ENST00000394838.2,ENST00000446538.1,ENST00000370685.3,ENST00000370680.1,ENST00000370689.2,ENST00000450730.1,ENST00000370684.1,ENST00000370688.3,ENST00000413538.1,ENST00000417530.1,ENST00000436133.1,ENST00000370682.3	chr1	84647882:84648011:84649719:84649818:84650782:84650865,	84649720	84649818	84649798	84649798	Nonsense_Mutation	C	T	p.R106*
STAD	TCGA-HU-A4G9-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75684582:75685156:75687020:75687204:75688598:75688837,	75687021	75687204	75687179	75687179	Nonsense_Mutation	G	A	p.R707*
STAD	TCGA-HU-A4G9-01	PUM2	ENST00000319801.5,ENST00000440577.1	chr2	20460097:20460227:20462953:20463221:20478343:20478580,20460097:20460227:20462953:20463221:20482707:20482992,	20462954	20463221	20463159	20463159	Nonsense_Mutation	G	A	p.R674*
STAD	TCGA-HU-A4G9-01	LAMA5	ENST00000252999.3,ENST00000370691.2	chr20	60885957:60886150:60886217:60886363:60886456:60886592,	60886218	60886363	60886294	60886294	Nonsense_Mutation	G	A	p.R3338*
STAD	TCGA-HU-A4G9-01	DPYS	ENST00000351513.2	chr8	105393411:105393542:105405011:105405219:105430943:105431082,105393411:105393542:105405011:105405219:105423976:105424043,105393411:105393542:105405011:105405219:105436474:105436617,	105405012	105405219	105405032	105405032	Nonsense_Mutation	G	A	p.R475*
STAD	TCGA-HU-A4GC-01	MYO5A	ENST00000399231.3,ENST00000358212.6,ENST00000399229.2,ENST00000399233.2,ENST00000356338.6,ENST00000553916.1	chr15	52620048:52620203:52622549:52622696:52628659:52628753,	52622550	52622696	52622646	52622646	Nonsense_Mutation	G	A	p.R1462*
STAD	TCGA-HU-A4GC-01	DNM2	ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000590806.1,ENST00000585892.1,ENST00000359692.6	chr19	10930655:10930765:10934463:10934575:10935732:10935897,	10934464	10934575	10934546	10934546	Nonsense_Mutation	C	T	p.R622*
STAD	TCGA-HU-A4GC-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300777	18300777	Nonsense_Mutation	C	T	p.W1550*
STAD	TCGA-HU-A4GC-01	GNB1L	ENST00000403325.1,ENST00000329517.6,ENST00000405009.1	chr22	19799817:19799970:19808120:19808246:19808750:19808898,	19808121	19808246	19808157	19808157	Nonsense_Mutation	C	T	p.W73*
STAD	TCGA-HU-A4GD-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285091	217285091	Nonsense_Mutation	C	A	p.S311*
STAD	TCGA-HU-A4GN-01	KIF17	ENST00000490034.1,ENST00000375044.1,ENST00000247986.2,ENST00000400463.3,ENST00000477167.1	chr1	20990508:20991255:20992706:20992824:20996913:20996981,	20992707	20992824	20992758	20992758	Nonsense_Mutation	G	A	p.R954*
STAD	TCGA-HU-A4GN-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097630	27097630	Nonsense_Mutation	G	A	p.W1073*
STAD	TCGA-HU-A4GN-01	IFI16	ENST00000483916.1	chr1	159015086:159015254:159021468:159023514:159024610:159024914,159019221:159019389:159021468:159023514:159024610:159024914,	159021469	159023514	159021772	159021772	Nonsense_Mutation	C	T	p.R601*
STAD	TCGA-HU-A4GN-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000368132.3,ENST00000295809.7	chr1	159019221:159019389:159021468:159021888:159023322:159023514,	159021469	159021888	159021772	159021772	Nonsense_Mutation	C	T	p.R601*
STAD	TCGA-HU-A4GN-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752324	8752324	Nonsense_Mutation	C	T	p.W171*
STAD	TCGA-HU-A4GN-01	ZWILCH	ENST00000446801.2,ENST00000562645.1,ENST00000561583.1,ENST00000307897.5,ENST00000535141.2,ENST00000565627.1	chr15	66816014:66816086:66819627:66819721:66820194:66820250,	66819628	66819721	66819666	66819666	Nonsense_Mutation	G	A	p.W286*
STAD	TCGA-HU-A4GN-01	USP34	ENST00000463046.1,ENST00000476716.1	chr2	61436033:61436112:61438906:61439064:61441194:61441353,61436033:61436112:61438906:61439064:61447444:61447503,	61438907	61439064	61439037	61439037	Nonsense_Mutation	G	A	p.Q2904*
STAD	TCGA-HU-A4GN-01	EPHA4	ENST00000541600.1,ENST00000281821.2,ENST00000409854.1,ENST00000409938.1,ENST00000434266.1	chr2	222428998:222429114:222433437:222433505:222436877:222437001,	222433438	222433505	222433479	222433479	Nonsense_Mutation	G	A	p.Q40*
STAD	TCGA-HU-A4GN-01	PRKCD	ENST00000487897.1,ENST00000464818.1,ENST00000330452.3	chr3	53199144:53199231:53212419:53212553:53213592:53213710,	53212420	53212553	53212511	53212511	Nonsense_Mutation	C	T	p.Q25*
STAD	TCGA-HU-A4GN-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151153326	151153326	Nonsense_Mutation	G	T	p.G1027*
STAD	TCGA-HU-A4GN-01	CRISPLD1	ENST00000520277.1	chr8	75897104:75897155:75898160:75898480:75924667:75924724,	75898161	75898480	75898439	75898439	Nonsense_Mutation	C	T	p.R73*
STAD	TCGA-HU-A4GN-01	TSTA3	ENST00000531473.1,ENST00000529064.1,ENST00000425753.2	chr8	144695365:144695465:144695693:144695773:144695920:144695987,	144695694	144695773	144695702	144695702	Nonsense_Mutation	C	A	p.E268*
STAD	TCGA-HU-A4GP-01	ACTR3	ENST00000536059.1,ENST00000263238.2,ENST00000535589.2	chr2	114697535:114697679:114699762:114699936:114709055:114709148,	114699763	114699936	114699799	114699799	Nonsense_Mutation	G	T	p.E241*
STAD	TCGA-HU-A4GP-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541092	187541092	Nonsense_Mutation	G	T	p.Y2216*
STAD	TCGA-HU-A4GP-01	ATG10	ENST00000458350.3,ENST00000282185.3,ENST00000513634.1	chr5	81460263:81460356:81474308:81474406:81548380:81548478,	81474309	81474406	81474361	81474361	Nonsense_Mutation	T	A	p.Y136*
STAD	TCGA-HU-A4GQ-01	RALGPS2	ENST00000480743.1,ENST00000367635.3	chr1	178858776:178858831:178861364:178861442:178863053:178863126,	178861365	178861442	178861408	178861408	Nonsense_Mutation	C	T	p.R431*
STAD	TCGA-HU-A4GQ-01	CPXM2	ENST00000241305.3	chr10	125521387:125521685:125526488:125526668:125528041:125528238,	125526489	125526668	125526656	125526656	Nonsense_Mutation	C	A	p.G438*
STAD	TCGA-HU-A4GQ-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014243	28014243	Nonsense_Mutation	G	A	p.R115*
STAD	TCGA-HU-A4GQ-01	ASPG	ENST00000546892.2	chr14	104573566:104573682:104575565:104575652:104578256:104578337,	104575566	104575652	104575630	104575630	Nonsense_Mutation	G	T	p.E500*
STAD	TCGA-HU-A4GQ-01	ATXN7L3	ENST00000586688.1,ENST00000389384.4,ENST00000589607.1,ENST00000587097.1,ENST00000593073.1,ENST00000590537.1,ENST00000454077.2,ENST00000591295.1	chr17	42272018:42272042:42272135:42272207:42272464:42272508,	42272136	42272207	42272170	42272170	Nonsense_Mutation	G	A	p.R235*
STAD	TCGA-HU-A4GQ-01	CLDN18	ENST00000183605.5	chr3	137729057:137729287:137742499:137742664:137743448:137743566,	137742500	137742664	137742517	137742517	Nonsense_Mutation	C	T	p.R80*
STAD	TCGA-HU-A4GQ-01	RICTOR	ENST00000511516.1,ENST00000357387.3,ENST00000510711.1,ENST00000296782.5	chr5	38971978:38972061:38975638:38975706:38978684:38978750,	38975639	38975706	38975690	38975690	Nonsense_Mutation	G	A	p.R280*
STAD	TCGA-HU-A4GQ-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379031	77379031	Nonsense_Mutation	C	T	p.R332*
STAD	TCGA-HU-A4GQ-01	SLC26A3	ENST00000340010.5,ENST00000379083.3,ENST00000422236.2	chr7	107417081:107417151:107418619:107418726:107420112:107420208,	107418620	107418726	107418725	107418725	Nonsense_Mutation	A	C	p.L470*
STAD	TCGA-HU-A4GT-01	DDX47	ENST00000541537.1,ENST00000358007.3	chr12	12976136:12976253:12976803:12976950:12977473:12977611,	12976804	12976950	12976903	12976903	Nonsense_Mutation	C	T	p.R284*
STAD	TCGA-HU-A4GT-01	DYNC1H1	ENST00000360184.4	chr14	102453789:102453969:102455039:102455189:102457863:102458010,	102455040	102455189	102455091	102455091	Nonsense_Mutation	C	T	p.Q924*
STAD	TCGA-HU-A4GT-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41813935:41814078:41814295:41814448:41814962:41815158,	41814296	41814448	41814328	41814328	Nonsense_Mutation	G	A	p.Q955*
STAD	TCGA-HU-A4GT-01	NF1	ENST00000487476.1,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29490203:29490394:29496908:29497015:29508439:29508507,	29496909	29497015	29497003	29497003	Nonsense_Mutation	C	T	p.R192*
STAD	TCGA-HU-A4GT-01	CDK15	ENST00000450471.2,ENST00000460149.1,ENST00000260967.2,ENST00000374598.4,ENST00000434439.1,ENST00000410091.3	chr2	202719596:202719660:202737000:202737049:202744750:202744890,	202737001	202737049	202737024	202737024	Nonsense_Mutation	C	T	p.R345*
STAD	TCGA-HU-A4GT-01	PHF20	ENST00000374000.4,ENST00000339089.6,ENST00000486408.1,ENST00000374012.3	chr20	34435271:34435356:34450934:34451322:34457359:34457473,34446223:34446303:34450934:34451322:34457359:34457473,	34450935	34451322	34451082	34451082	Nonsense_Mutation	C	T	p.R190*
STAD	TCGA-HU-A4GT-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491997	107491997	Nonsense_Mutation	C	T	p.Q477*
STAD	TCGA-HU-A4GT-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87680094:87680226:87683879:87684343:87685745:87685877,	87683880	87684343	87684104	87684104	Nonsense_Mutation	C	T	p.Q1260*
STAD	TCGA-HU-A4GT-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326076	89326076	Nonsense_Mutation	C	T	p.R381*
STAD	TCGA-HU-A4GT-01	CIZ1	ENST00000357558.5,ENST00000277465.4	chr9	130940987:130941183:130941267:130941694:130942693:130942802,	130941268	130941694	130941408	130941408	Nonsense_Mutation	G	A	p.Q360*
STAD	TCGA-HU-A4GT-01	CIZ1	ENST00000372948.3,ENST00000372954.1	chr9	130940987:130941183:130941351:130941694:130942693:130942802,	130941352	130941694	130941408	130941408	Nonsense_Mutation	G	A	p.Q360*
STAD	TCGA-HU-A4GT-01	GABRA3	ENST00000535043.1,ENST00000370314.4	chrX	151358201:151358413:151366104:151366257:151376472:151376616,	151366105	151366257	151366135	151366135	Nonsense_Mutation	T	A	p.R301*
STAD	TCGA-HU-A4GU-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120510055:120510244:120510699:120510855:120512133:120512367,	120510700	120510855	120510772	120510772	Nonsense_Mutation	G	A	p.Q398*
STAD	TCGA-HU-A4GU-01	PPP3CB	ENST00000545874.1,ENST00000394829.2,ENST00000394828.2,ENST00000342558.3,ENST00000360663.5	chr10	75231225:75231371:75234676:75234788:75238256:75238381,	75234677	75234788	75234731	75234731	Nonsense_Mutation	T	A	p.R157*
STAD	TCGA-HU-A4GU-01	E2F7	ENST00000322886.7,ENST00000416496.2,ENST00000550669.1	chr12	77427785:77427822:77436844:77436979:77438416:77438575,	77436845	77436979	77436971	77436971	Nonsense_Mutation	G	A	p.R333*
STAD	TCGA-HU-A4GU-01	SPRED1	ENST00000561205.1	chr15	38545381:38545418:38591573:38591748:38614441:38614610,	38591574	38591748	38591731	38591731	Nonsense_Mutation	C	T	p.R64*
STAD	TCGA-HU-A4GU-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351149	89351149	Nonsense_Mutation	G	A	p.R601*
STAD	TCGA-HU-A4GU-01	ITGA2B	ENST00000377068.3,ENST00000592226.1,ENST00000353281.4,ENST00000262407.5	chr17	42458246:42458429:42460860:42461072:42461261:42461314,	42460861	42461072	42461008	42461008	Nonsense_Mutation	C	A	p.E355*
STAD	TCGA-HU-A4GU-01	ADCY3	ENST00000606682.1,ENST00000260600.5,ENST00000405392.1	chr2	25046077:25046224:25047246:25047405:25048913:25048995,	25047247	25047405	25047330	25047330	Nonsense_Mutation	G	A	p.R885*
STAD	TCGA-HU-A4GU-01	SP100	ENST00000264052.5,ENST00000340126.4,ENST00000409112.1	chr2	231367780:231367825:231368900:231369005:231371017:231371160,	231368901	231369005	231368993	231368993	Nonsense_Mutation	C	T	p.R620*
STAD	TCGA-HU-A4GU-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951518	235951518	Nonsense_Mutation	G	A	p.W702*
STAD	TCGA-HU-A4GU-01	PXMP4	ENST00000217398.3	chr20	32295294:32295775:32298360:32298579:32302479:32302542,	32298361	32298579	32298462	32298462	Nonsense_Mutation	G	A	p.Q92*
STAD	TCGA-HU-A4GU-01	PXMP4	ENST00000409299.3	chr20	32295294:32295775:32298360:32298559:32302479:32302542,	32298361	32298559	32298462	32298462	Nonsense_Mutation	G	A	p.Q92*
STAD	TCGA-HU-A4GU-01	PIK3R1	ENST00000521381.1,ENST00000520675.1,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1	chr5	67569217:67569310:67569766:67569841:67575429:67575561,	67569767	67569841	67569823	67569823	Nonsense_Mutation	C	T	p.R162*
STAD	TCGA-HU-A4GU-01	SNX24	ENST00000511211.1,ENST00000261369.4,ENST00000506996.1,ENST00000395451.4,ENST00000513881.1,ENST00000502387.1,ENST00000511545.1	chr5	122272428:122272512:122281749:122281854:122335606:122335679,	122281750	122281854	122281825	122281825	Nonsense_Mutation	C	T	p.R74*
STAD	TCGA-HU-A4GX-01	MTHFR	ENST00000376583.3,ENST00000376590.3,ENST00000376585.1,ENST00000376592.1	chr1	11854414:11854595:11854785:11854920:11855154:11855405,	11854786	11854920	11854880	11854880	Nonsense_Mutation	G	A	p.R358*
STAD	TCGA-HU-A4GX-01	SART3	ENST00000431469.2	chr12	108931263:108931371:108931840:108931979:108932720:108932865,108930483:108930561:108931840:108931979:108932709:108932865,	108931841	108931979	108931976	108931976	Nonsense_Mutation	G	A	p.R356*
STAD	TCGA-HU-A4GX-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54547174:54547396:54591152:54591339:54603018:54603136,	54591153	54591339	54591218	54591218	Nonsense_Mutation	C	T	p.R1198*
STAD	TCGA-HU-A4GX-01	SLC35A5	ENST00000494706.1	chr3	112299392:112299553:112300091:112300173:112301517:112301577,	112300092	112300173	112300135	112300135	Nonsense_Mutation	C	T	p.R391*
STAD	TCGA-HU-A4GX-01	SLC35A5	ENST00000261034.2	chr3	112299392:112299553:112300025:112300173:112301517:112301577,	112300026	112300173	112300135	112300135	Nonsense_Mutation	C	T	p.R391*
STAD	TCGA-HU-A4GX-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288840	33288840	Nonsense_Mutation	G	A	p.R238*
STAD	TCGA-HU-A4GX-01	SND1	ENST00000354725.3	chr7	127347610:127347701:127361340:127361454:127447537:127447627,	127361341	127361454	127361422	127361422	Nonsense_Mutation	C	T	p.R374*
STAD	TCGA-HU-A4H0-01	ROCK1	ENST00000399799.2	chr18	18572791:18572898:18586311:18586558:18586659:18586751,	18586312	18586558	18586552	18586552	Nonsense_Mutation	C	A	p.E549*
STAD	TCGA-HU-A4H2-01	CNDP1	ENST00000358821.3,ENST00000582365.1	chr18	72226557:72226707:72228090:72228253:72229281:72229370,	72228091	72228253	72228193	72228193	Nonsense_Mutation	C	T	p.Q136*
STAD	TCGA-HU-A4H2-01	FOXA2	ENST00000377115.4	chr20	22561642:22563792:22564829:22564899:22565912:22566093,	22564830	22564899	22564868	22564868	Nonsense_Mutation	C	A	p.E11*
STAD	TCGA-HU-A4H3-01	CBX1	ENST00000495350.1,ENST00000225603.4,ENST00000402583.1	chr17	46153362:46153540:46154226:46154403:46178629:46178649,	46154227	46154403	46154279	46154279	Nonsense_Mutation	G	A	p.R30*
STAD	TCGA-HU-A4H3-01	DOCK6	ENST00000587656.1,ENST00000294618.7,ENST00000319867.7	chr19	11322668:11322827:11323851:11324004:11324950:11325085,	11323852	11324004	11323941	11323941	Nonsense_Mutation	G	A	p.R1468*
STAD	TCGA-HU-A4H3-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000548440.1,ENST00000355831.2,ENST00000392783.2	chr2	160181321:160181465:160182163:160182429:160189050:160189197,	160182164	160182429	160182228	160182228	Nonsense_Mutation	G	A	p.Q2049*
STAD	TCGA-HU-A4H3-01	NKIRAS1	ENST00000416026.2	chr3	23942298:23942540:23952301:23952412:23958274:23958415,	23952302	23952412	23952392	23952392	Nonsense_Mutation	C	A	p.G2*
STAD	TCGA-HU-A4H3-01	FBXL7	ENST00000504595.1,ENST00000329673.7,ENST00000510662.1	chr5	15616091:15616181:15927998:15928610:15936558:15937295,	15927999	15928610	15928475	15928475	Nonsense_Mutation	C	T	p.R202*
STAD	TCGA-HU-A4H3-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000537033.1,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152615094:152615262:152621775:152621916:152623003:152623198,	152621776	152621916	152621778	152621778	Nonsense_Mutation	G	A	p.Q5894*
STAD	TCGA-HU-A4H4-01	PHF11	ENST00000378319.3,ENST00000496612.1,ENST00000426879.1,ENST00000488958.1,ENST00000467763.1,ENST00000465045.1,ENST00000357596.3,ENST00000442195.1	chr13	50092153:50092287:50095029:50095076:50096178:50096196,	50095030	50095076	50095043	50095043	Nonsense_Mutation	C	T	p.Q158*
STAD	TCGA-HU-A4H4-01	PREPL	ENST00000409936.1	chr2	44573437:44573529:44586635:44587177:44588518:44588632,	44586636	44587177	44586851	44586851	Nonsense_Mutation	G	A	p.Q2*
STAD	TCGA-HU-A4H4-01	PREPL	ENST00000410081.1	chr2	44573437:44573529:44586635:44586889:44588662:44588944,44573437:44573529:44586635:44586889:44588518:44588632,	44586636	44586889	44586851	44586851	Nonsense_Mutation	G	A	p.Q2*
STAD	TCGA-HU-A4H5-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235860382:235860572:235866046:235866277:235872390:235872608,	235866047	235866277	235866229	235866229	Nonsense_Mutation	G	A	p.R3398*
STAD	TCGA-HU-A4H5-01	IPO8	ENST00000535989.1,ENST00000540979.1,ENST00000256079.4	chr12	30833455:30833572:30834592:30834751:30837234:30837391,	30834593	30834751	30834694	30834694	Nonsense_Mutation	C	T	p.W127*
STAD	TCGA-HU-A4H5-01	TNS4	ENST00000254051.6	chr17	38643287:38643712:38644797:38645221:38652238:38652772,	38644798	38645221	38645216	38645216	Nonsense_Mutation	T	A	p.K149*
STAD	TCGA-HU-A4H5-01	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000585850.1,ENST00000428549.4,ENST00000430352.2,ENST00000586539.1	chr17	66928428:66928655:66929308:66929412:66933091:66933256,	66929309	66929412	66929370	66929370	Nonsense_Mutation	G	C	p.S170*
STAD	TCGA-HU-A4H5-01	DNM2	ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000585892.1,ENST00000359692.6,ENST00000591701.1	chr19	10887844:10887892:10893635:10893796:10897239:10897382,	10893636	10893796	10893683	10893683	Nonsense_Mutation	A	T	p.K246*
STAD	TCGA-HU-A4H5-01	ZDHHC8	ENST00000334554.7,ENST00000320602.7,ENST00000405930.3	chr22	20119517:20119574:20126716:20126838:20127000:20127158,	20126717	20126838	20126835	20126835	Nonsense_Mutation	C	T	p.R75*
STAD	TCGA-HU-A4H6-01	FRMD6	ENST00000554167.1,ENST00000344768.5,ENST00000554495.1,ENST00000395718.2,ENST00000356218.4	chr14	52171466:52171653:52174795:52174951:52178248:52178314,	52174796	52174951	52174910	52174910	Nonsense_Mutation	C	T	p.R225*
STAD	TCGA-HU-A4H8-01	HMCN1	ENST00000271588.4	chr1	186143645:186143774:186147547:186147898:186151299:186151419,	186147548	186147898	186147634	186147634	Nonsense_Mutation	G	T	p.G5344*
STAD	TCGA-HU-A4H8-01	PELI3	ENST00000349459.6	chr11	66235598:66235751:66238712:66238842:66239839:66239941,	66238713	66238842	66238753	66238753	Nonsense_Mutation	C	T	p.R89*
STAD	TCGA-HU-A4H8-01	FCHSD2	ENST00000311172.7,ENST00000409853.1,ENST00000409418.4	chr11	72598514:72598619:72600873:72600990:72613587:72613683,	72600874	72600990	72600987	72600987	Nonsense_Mutation	G	A	p.R310*
STAD	TCGA-HU-A4H8-01	FOXM1	ENST00000545049.1,ENST00000361953.3,ENST00000342628.2,ENST00000359843.3,ENST00000537018.1	chr12	2977728:2977920:2981261:2981413:2983142:2983303,	2981262	2981413	2981273	2981273	Nonsense_Mutation	G	A	p.R215*
STAD	TCGA-HU-A4H8-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42002888:42003547:42005348:42005694:42019377:42019604,	42005349	42005694	42005391	42005391	Nonsense_Mutation	C	T	p.R1043*
STAD	TCGA-HU-A4H8-01	ICAM1	ENST00000423829.2,ENST00000264832.3	chr19	10395078:10395333:10395458:10395704:10395790:10396259,	10395459	10395704	10395521	10395521	Nonsense_Mutation	C	T	p.Q415*
STAD	TCGA-HU-A4H8-01	ACOT8	ENST00000487205.1	chr20	44470403:44470595:44472901:44473059:44477088:44477314,	44472902	44473059	44472920	44472920	Nonsense_Mutation	G	A	p.R210*
STAD	TCGA-HU-A4H8-01	ASCC2	ENST00000495967.1	chr22	30218340:30218453:30221075:30221246:30234166:30234217,	30221076	30221246	30221196	30221196	Nonsense_Mutation	A	C	p.Y97*
STAD	TCGA-HU-A4H8-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2	chr5	37351291:37351458:37352838:37352931:37358182:37358253,	37352839	37352931	37352911	37352911	Nonsense_Mutation	G	A	p.R162*
STAD	TCGA-HU-A4HD-01	MED6	ENST00000556495.1,ENST00000256379.5,ENST00000440435.2,ENST00000556423.1,ENST00000430055.2,ENST00000554870.1	chr14	71063327:71063415:71064334:71064494:71067332:71067360,71063327:71063419:71064334:71064494:71067332:71067360,	71064335	71064494	71064347	71064347	Nonsense_Mutation	A	T	p.L57*
STAD	TCGA-HU-A4HD-01	ARHGAP6	ENST00000534860.1,ENST00000303025.6,ENST00000380736.1,ENST00000337414.4	chrX	11160352:11160433:11162099:11162368:11174648:11174746,	11162100	11162368	11162141	11162141	Nonsense_Mutation	G	C	p.S712*
STAD	TCGA-IN-7808-01	IGSF8	ENST00000314485.7,ENST00000368086.1	chr1	160062361:160062485:160062713:160063121:160063499:160063961,	160062714	160063121	160062789	160062789	Nonsense_Mutation	G	A	p.R413*
STAD	TCGA-IN-7808-01	CWF19L1	ENST00000370379.1	chr10	101996606:101996726:101997778:101997988:102003454:102003529,101995423:101995521:101997778:101997988:102003454:102003529,	101997779	101997988	101997883	101997883	Nonsense_Mutation	C	A	p.E384*
STAD	TCGA-IN-7808-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450893	55450893	Nonsense_Mutation	G	A	p.R432*
STAD	TCGA-IN-8462-01	MARS	ENST00000447721.2,ENST00000537638.2,ENST00000315473.5,ENST00000262027.5,ENST00000545888.2	chr12	57894103:57894305:57898007:57898082:57905480:57905568,	57898008	57898082	57898029	57898029	Nonsense_Mutation	C	T	p.R439*
STAD	TCGA-IN-8462-01	RFTN1	ENST00000451036.1,ENST00000441460.1,ENST00000431547.1,ENST00000334133.4,ENST00000449415.1	chr3	16450979:16450990:16475357:16475544:16535231:16535384,	16475358	16475544	16475457	16475457	Nonsense_Mutation	G	T	p.S78*
STAD	TCGA-IN-8663-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
STAD	TCGA-IN-8663-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971000	21971000	Nonsense_Mutation	C	A	p.E120*
STAD	TCGA-IP-7968-01	PRDM4	ENST00000228437.5	chr12	108140051:108140201:108145191:108145986:108147700:108147886,	108145192	108145986	108145867	108145867	Nonsense_Mutation	G	A	p.Q151*
STAD	TCGA-IP-7968-01	PRDM4	ENST00000550376.1	chr12	108140051:108140201:108145423:108145986:108147700:108147886,	108145424	108145986	108145867	108145867	Nonsense_Mutation	G	A	p.Q151*
STAD	TCGA-IP-7968-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
STAD	TCGA-IP-7968-01	FAM129B	ENST00000373312.3,ENST00000373314.3	chr9	130270700:130270817:130271254:130271410:130272424:130272612,	130271255	130271410	130271314	130271314	Nonsense_Mutation	G	A	p.R420*
TGCT	TCGA-VF-A8AD-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214783	108214783	Nonsense_Mutation	G	C	p.S526X
TGCT	TCGA-2G-AAG0-01	TRPS1	ENST00000519076.1,ENST00000520276.1,ENST00000220888.5,ENST00000395715.3	chr8	116430557:116430680:116599227:116599831:116616099:116616277,	116599228	116599831	116599271	116599271	Nonsense_Mutation	G	T	p.S886X
TGCT	TCGA-S6-A8JW-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000506714.1	chr4	89300215:89300272:89304372:89304532:89306650:89306727,	89304373	89304532	89304513	89304513	Nonsense_Mutation	G	T	p.E114X
TGCT	TCGA-S6-A8JW-01	HERC6	ENST00000504905.1	chr4	89300215:89300272:89304383:89304532:89306650:89306727,	89304384	89304532	89304513	89304513	Nonsense_Mutation	G	T	p.E114X
TGCT	TCGA-S6-A8JW-01	HERC6	ENST00000502870.1	chr4	89300215:89300272:89304336:89304532:89306650:89306727,	89304337	89304532	89304513	89304513	Nonsense_Mutation	G	T	p.E114X
TGCT	TCGA-2G-AAKG-05	BEND6	ENST00000370746.3	chr6	56846508:56846728:56857175:56857353:56879930:56879958,	56857176	56857353	56857323	56857323	Nonsense_Mutation	C	T	p.R90X
TGCT	TCGA-2G-AAGF-01	TRIP6	ENST00000417475.1,ENST00000437505.1,ENST00000200457.4,ENST00000476870.1	chr7	100465742:100465855:100466116:100466488:100467991:100468085,	100466117	100466488	100466178	100466178	Nonsense_Mutation	C	A	p.S142X
TGCT	TCGA-2G-AAGF-01	FGD4	ENST00000546442.1	chr12	32729199:32729383:32734893:32735401:32751430:32751520,32717070:32717223:32734893:32735401:32751430:32751520,	32734894	32735401	32734925	32734925	Nonsense_Mutation	G	T	p.E42X
TGCT	TCGA-2G-AAHN-01	CELF3	ENST00000420342.1,ENST00000470688.1,ENST00000290583.4	chr1	151678699:151678837:151679144:151679210:151679620:151679770,	151679145	151679210	151679178	151679178	Nonsense_Mutation	G	A	p.Q319X
TGCT	TCGA-2G-AAHN-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685422	51685422	Nonsense_Mutation	G	A	p.Q490X
TGCT	TCGA-2G-AALG-01	CBX1	ENST00000495350.1,ENST00000225603.4,ENST00000402583.1	chr17	46153362:46153540:46154226:46154403:46178629:46178649,	46154227	46154403	46154242	46154242	Nonsense_Mutation	C	T	p.W42X
TGCT	TCGA-2G-AALO-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
TGCT	TCGA-2G-AAM3-01	C1orf194	ENST00000369949.4,ENST00000369942.2	chr1	109649628:109649744:109650542:109650659:109656254:109656457,	109650543	109650659	109650648	109650648	Nonsense_Mutation	A	T	p.Y19X
TGCT	TCGA-2G-AAGJ-01	CYP17A1	ENST00000369887.3	chr10	104592749:104592965:104593792:104593879:104594541:104594771,	104593793	104593879	104593813	104593813	Nonsense_Mutation	T	A	p.K245X
TGCT	TCGA-2G-AAFN-01	CYP1A1	ENST00000562201.1,ENST00000569630.1	chr15	75014613:75014682:75014875:75015464:75017781:75017832,	75014876	75015464	75015057	75015057	Nonsense_Mutation	C	A	p.G128X
TGCT	TCGA-2G-AAFN-01	MARS	ENST00000550449.1	chr12	57882801:57882892:57883049:57883341:57883678:57883754,	57883050	57883341	57883073	57883073	Nonsense_Mutation	G	A	p.W75X
TGCT	TCGA-2G-AAFN-01	MARS	ENST00000551431.1	chr12	57882801:57882892:57883049:57883128:57883989:57883999,	57883050	57883128	57883073	57883073	Nonsense_Mutation	G	A	p.W75X
TGCT	TCGA-XE-A8H5-01	PPP1R17	ENST00000342032.3	chr7	31732019:31732137:31735082:31735235:31736578:31736731,	31735083	31735235	31735181	31735181	Nonsense_Mutation	A	T	p.K61X
TGCT	TCGA-2G-AALT-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
TGCT	TCGA-XE-AAO4-01	KDM2A	ENST00000529006.2,ENST00000398645.2	chr11	66947549:66947688:66948790:66948869:66949316:66949363,	66948791	66948869	66948811	66948811	Nonsense_Mutation	C	T	p.Q68X
TGCT	TCGA-WZ-A7V5-01	UTRN	ENST00000432686.1,ENST00000367526.4,ENST00000367545.3	chr6	145142017:145142154:145148483:145148522:145148746:145148812,	145148484	145148522	145148508	145148508	Nonsense_Mutation	G	A	p.W3173X
TGCT	TCGA-2G-AAGA-01	ZSCAN10	ENST00000576985.1	chr16	3141764:3141829:3142542:3143005:3149190:3149229,3142229:3142317:3142542:3143005:3149190:3149229,	3142543	3143005	3142732	3142732	Nonsense_Mutation	G	T	p.C14X
TGCT	TCGA-2G-AAGA-01	ZSCAN10	ENST00000572548.1	chr16	3141764:3141829:3142677:3143005:3149190:3149229,	3142678	3143005	3142732	3142732	Nonsense_Mutation	G	T	p.C14X
TGCT	TCGA-W4-A7U4-01	BROX	ENST00000537020.1,ENST00000539697.1,ENST00000340934.5	chr1	222902100:222902170:222902961:222903043:222903368:222903519,	222902962	222903043	222903028	222903028	Nonsense_Mutation	C	T	p.Q275X
TGCT	TCGA-4K-AA1G-01	FBXO16	ENST00000346498.2	chr8	28286159:28286253:28304687:28304790:28309760:28309993,	28304688	28304790	28304723	28304723	Nonsense_Mutation	G	A	p.Q270X
TGCT	TCGA-2G-AAG3-01	ATL2	ENST00000419554.2,ENST00000539122.1,ENST00000378954.4,ENST00000406122.1,ENST00000402054.1,ENST00000405384.2,ENST00000332337.4,ENST00000452935.2,ENST00000546051.1	chr2	38526397:38526469:38527413:38527470:38536520:38536648,	38527414	38527470	38527452	38527452	Nonsense_Mutation	G	A	p.Q364X
TGCT	TCGA-2G-AAG3-01	OBSCN	ENST00000570156.2,ENST00000366706.2	chr1	228464878:228465014:228465205:228465367:228465454:228465559,	228465206	228465367	228465295	228465295	Nonsense_Mutation	G	T	p.E2657X
TGCT	TCGA-2G-AAF6-01	CASD1	ENST00000297273.4	chr7	94164620:94164835:94166783:94167206:94168278:94168368,	94166784	94167206	94167043	94167043	Nonsense_Mutation	T	G	p.L368X
TGCT	TCGA-2G-AAH2-01	FNDC3B	ENST00000415807.2,ENST00000490832.1,ENST00000416957.1,ENST00000336824.4	chr3	172064116:172064230:172065001:172065151:172070592:172070668,	172065002	172065151	172065071	172065071	Nonsense_Mutation	G	T	p.E812X
TGCT	TCGA-SB-A6J6-01	RUFY3	ENST00000504805.2	chr4	71655211:71655309:71659481:71659621:71660511:71660611,	71659482	71659621	71659590	71659590	Nonsense_Mutation	C	T	p.Q476X
TGCT	TCGA-SB-A6J6-01	RUFY3	ENST00000381006.3,ENST00000502653.1	chr4	71655211:71655309:71659501:71659621:71660511:71660611,	71659502	71659621	71659590	71659590	Nonsense_Mutation	C	T	p.Q476X
TGCT	TCGA-YU-A90W-01	ERICH1	ENST00000518277.1,ENST00000262109.7	chr8	623864:624047:642477:642612:665860:665927,	642478	642612	642586	642586	Nonsense_Mutation	G	A	p.R66X
TGCT	TCGA-XE-AAOL-01	LSS	ENST00000522411.1	chr21	47641767:47641889:47642576:47642652:47647465:47647604,	47642577	47642652	47642636	47642636	Nonsense_Mutation	G	T	p.C112X
TGCT	TCGA-XE-AAOL-01	LSS	ENST00000464357.1,ENST00000356396.4,ENST00000450351.1,ENST00000457828.2,ENST00000397728.3	chr21	47641767:47641889:47642543:47642652:47647465:47647604,	47642544	47642652	47642636	47642636	Nonsense_Mutation	G	T	p.C112X
TGCT	TCGA-X3-A8G4-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713816	40713816	Nonsense_Mutation	T	A	p.C1618X
TGCT	TCGA-X3-A8G4-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133789875	133789875	Nonsense_Mutation	G	A	p.R1249X
TGCT	TCGA-X3-A8G4-01	ITGA7	ENST00000394230.2,ENST00000257880.7,ENST00000553804.1,ENST00000555728.1,ENST00000347027.6,ENST00000257879.6,ENST00000394229.2,ENST00000452168.2	chr12	56088433:56088479:56088561:56088754:56089305:56089421,	56088562	56088754	56088587	56088587	Nonsense_Mutation	G	T	p.S728X
TGCT	TCGA-2G-AAG8-01	CCDC136	ENST00000378685.4	chr7	128434747:128434822:128441239:128441527:128444703:128444815,	128441240	128441527	128441311	128441311	Nonsense_Mutation	G	T	p.E190X
TGCT	TCGA-2G-AAG8-01	CCDC136	ENST00000464832.1,ENST00000487361.1,ENST00000297788.4	chr7	128434747:128434822:128441239:128441563:128444703:128444815,	128441240	128441563	128441311	128441311	Nonsense_Mutation	G	T	p.E190X
TGCT	TCGA-2G-AAKG-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
TGCT	TCGA-2G-AALS-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
TGCT	TCGA-2G-AAFH-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63488321	63488321	Nonsense_Mutation	G	T	p.E783*
TGCT	TCGA-2G-AAFH-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63488321	63488321	Nonsense_Mutation	G	T	p.E783*
TGCT	TCGA-2G-AAFH-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
TGCT	TCGA-2G-AAKO-05	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31613172:31613315:31632522:31633189:31648743:31648836,	31632523	31633189	31632777	31632777	Nonsense_Mutation	G	C	p.S217*
TGCT	TCGA-2G-AAG0-01	TRPS1	ENST00000519076.1,ENST00000520276.1,ENST00000220888.5,ENST00000395715.3	chr8	116430557:116430680:116599227:116599831:116616099:116616277,	116599228	116599831	116599271	116599271	Nonsense_Mutation	G	T	p.S886*
TGCT	TCGA-2G-AAH2-01	FNDC3B	ENST00000415807.2,ENST00000490832.1,ENST00000416957.1,ENST00000336824.4	chr3	172064116:172064230:172065001:172065151:172070592:172070668,	172065002	172065151	172065071	172065071	Nonsense_Mutation	G	T	p.E812*
TGCT	TCGA-XY-A8S2-01	PPP1R18	ENST00000488324.1	chr6	30646959:30647166:30652184:30652321:30654890:30654935,	30652185	30652321	30652190	30652190	Nonsense_Mutation	T	A	p.K536*
TGCT	TCGA-XY-A8S2-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30652190	30652190	Nonsense_Mutation	T	A	p.K536*
TGCT	TCGA-XE-A8H5-01	PPP1R17	ENST00000342032.3	chr7	31732019:31732137:31735082:31735235:31736578:31736731,	31735083	31735235	31735181	31735181	Nonsense_Mutation	A	T	p.K61*
TGCT	TCGA-2G-AAKG-05	BEND6	ENST00000370746.3	chr6	56846508:56846728:56857175:56857353:56879930:56879958,	56857176	56857353	56857323	56857323	Nonsense_Mutation	C	T	p.R90*
TGCT	TCGA-2G-AAFN-01	MARS	ENST00000550449.1	chr12	57882801:57882892:57883049:57883341:57883678:57883754,	57883050	57883341	57883073	57883073	Nonsense_Mutation	G	A	p.W75*
TGCT	TCGA-2G-AAFN-01	MARS	ENST00000551431.1	chr12	57882801:57882892:57883049:57883128:57883989:57883999,	57883050	57883128	57883073	57883073	Nonsense_Mutation	G	A	p.W75*
TGCT	TCGA-2G-AAFN-01	CYP1A1	ENST00000562201.1,ENST00000569630.1	chr15	75014613:75014682:75014875:75015464:75017781:75017832,	75014876	75015464	75015057	75015057	Nonsense_Mutation	C	A	p.G128*
TGCT	TCGA-XE-AAO4-01	KDM2A	ENST00000529006.2,ENST00000398645.2	chr11	66947549:66947688:66948790:66948869:66949316:66949363,	66948791	66948869	66948811	66948811	Nonsense_Mutation	C	T	p.Q68*
TGCT	TCGA-YU-A90W-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107304359:107304475:107309815:107309909:107312228:107312348,	107309816	107309909	107309827	107309827	Nonsense_Mutation	G	T	p.S218*
TGCT	TCGA-YU-A90W-01	ERICH1	ENST00000518277.1,ENST00000262109.7	chr8	623864:624047:642477:642612:665860:665927,	642478	642612	642586	642586	Nonsense_Mutation	G	A	p.R66*
TGCT	TCGA-2G-AAGJ-01	CYP17A1	ENST00000369887.3	chr10	104592749:104592965:104593792:104593879:104594541:104594771,	104593793	104593879	104593813	104593813	Nonsense_Mutation	T	A	p.K245*
TGCT	TCGA-VF-A8AC-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
TGCT	TCGA-ZM-AA06-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53585615:53585770:53585931:53586021:53586314:53586493,	53585932	53586021	53585984	53585984	Nonsense_Mutation	C	T	p.W2651*
TGCT	TCGA-2G-AALG-01	CBX1	ENST00000495350.1,ENST00000225603.4,ENST00000402583.1	chr17	46153362:46153540:46154226:46154403:46178629:46178649,	46154227	46154403	46154242	46154242	Nonsense_Mutation	C	T	p.W42*
TGCT	TCGA-2G-AAGO-01	XRCC2	ENST00000359321.1	chr7	152343588:152346448:152357785:152357867:152373125:152373250,	152357786	152357867	152357797	152357797	Nonsense_Mutation	G	T	p.S37*
TGCT	TCGA-2G-AAGA-01	ZSCAN10	ENST00000576985.1	chr16	3141764:3141829:3142542:3143005:3149190:3149229,3142229:3142317:3142542:3143005:3149190:3149229,	3142543	3143005	3142732	3142732	Nonsense_Mutation	G	T	p.C14*
TGCT	TCGA-2G-AAGA-01	ZSCAN10	ENST00000572548.1	chr16	3141764:3141829:3142677:3143005:3149190:3149229,	3142678	3143005	3142732	3142732	Nonsense_Mutation	G	T	p.C14*
TGCT	TCGA-SB-A6J6-01	RUFY3	ENST00000504805.2	chr4	71655211:71655309:71659481:71659621:71660511:71660611,	71659482	71659621	71659590	71659590	Nonsense_Mutation	C	T	p.Q476*
TGCT	TCGA-SB-A6J6-01	RUFY3	ENST00000381006.3,ENST00000502653.1	chr4	71655211:71655309:71659501:71659621:71660511:71660611,	71659502	71659621	71659590	71659590	Nonsense_Mutation	C	T	p.Q476*
TGCT	TCGA-2G-AAGF-01	TRIP6	ENST00000417475.1,ENST00000437505.1,ENST00000200457.4,ENST00000476870.1	chr7	100465742:100465855:100466116:100466488:100467991:100468085,	100466117	100466488	100466178	100466178	Nonsense_Mutation	C	A	p.S142*
TGCT	TCGA-2G-AAGF-01	CLCN7	ENST00000382745.4,ENST00000448525.1,ENST00000262318.8	chr16	1504411:1504466:1505134:1505251:1505731:1505796,	1505135	1505251	1505139	1505139	Nonsense_Mutation	G	T	p.S365*
TGCT	TCGA-2G-AAGF-01	FGD4	ENST00000546442.1	chr12	32729199:32729383:32734893:32735401:32751430:32751520,32717070:32717223:32734893:32735401:32751430:32751520,	32734894	32735401	32734925	32734925	Nonsense_Mutation	G	T	p.E42*
TGCT	TCGA-XY-A9T9-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409076.2	chr7	17833387:17833916:17836449:17836562:17838312:17838381,	17836450	17836562	17836517	17836517	Nonsense_Mutation	G	T	p.C864*
TGCT	TCGA-2G-AAG3-01	ATL2	ENST00000419554.2,ENST00000539122.1,ENST00000378954.4,ENST00000406122.1,ENST00000402054.1,ENST00000405384.2,ENST00000332337.4,ENST00000452935.2,ENST00000546051.1	chr2	38526397:38526469:38527413:38527470:38536520:38536648,	38527414	38527470	38527452	38527452	Nonsense_Mutation	G	A	p.Q364*
TGCT	TCGA-2G-AAHL-01	MAN2C1	ENST00000570257.2	chr15	75653978:75654061:75654195:75654366:75654683:75654732,	75654196	75654366	75654243	75654243	Nonsense_Mutation	G	A	p.Q352*
TGCT	TCGA-2G-AAHL-01	MAN2C1	ENST00000565683.1,ENST00000564785.1,ENST00000563441.1,ENST00000569482.1,ENST00000563622.1,ENST00000566634.1,ENST00000568944.1,ENST00000421803.2,ENST00000563058.1,ENST00000267978.5	chr15	75653978:75654061:75654195:75654288:75654683:75654732,	75654196	75654288	75654243	75654243	Nonsense_Mutation	G	A	p.Q352*
TGCT	TCGA-W4-A7U4-01	BROX	ENST00000537020.1,ENST00000539697.1,ENST00000340934.5	chr1	222902100:222902170:222902961:222903043:222903368:222903519,	222902962	222903043	222903028	222903028	Nonsense_Mutation	C	T	p.Q275*
TGCT	TCGA-VF-A8AD-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214783	108214783	Nonsense_Mutation	G	C	p.S526*
TGCT	TCGA-XE-AANI-01	KLHDC3	ENST00000244670.8	chr6	42981986:42982086:42984871:42985084:42985256:42985433,	42984872	42985084	42985044	42985044	Nonsense_Mutation	T	G	p.Y38*
TGCT	TCGA-WZ-A7V5-01	UTRN	ENST00000432686.1,ENST00000367526.4,ENST00000367545.3	chr6	145142017:145142154:145148483:145148522:145148746:145148812,	145148484	145148522	145148508	145148508	Nonsense_Mutation	G	A	p.W3173*
TGCT	TCGA-2G-AAHN-01	CELF3	ENST00000420342.1,ENST00000470688.1,ENST00000290583.4	chr1	151678699:151678837:151679144:151679210:151679620:151679770,	151679145	151679210	151679178	151679178	Nonsense_Mutation	G	A	p.Q319*
TGCT	TCGA-2G-AAHN-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685422	51685422	Nonsense_Mutation	G	A	p.Q490*
TGCT	TCGA-2G-AAH4-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Nonsense_Mutation	A	T	p.L532*
TGCT	TCGA-4K-AA1G-01	FBXO16	ENST00000346498.2	chr8	28286159:28286253:28304687:28304790:28309760:28309993,	28304688	28304790	28304723	28304723	Nonsense_Mutation	G	A	p.Q270*
TGCT	TCGA-2G-AAF6-01	CASD1	ENST00000297273.4	chr7	94164620:94164835:94166783:94167206:94168278:94168368,	94166784	94167206	94167043	94167043	Nonsense_Mutation	T	G	p.L368*
TGCT	TCGA-X3-A8G4-01	ITGA7	ENST00000394230.2,ENST00000257880.7,ENST00000553804.1,ENST00000555728.1,ENST00000347027.6,ENST00000257879.6,ENST00000394229.2,ENST00000452168.2	chr12	56088433:56088479:56088561:56088754:56089305:56089421,	56088562	56088754	56088587	56088587	Nonsense_Mutation	G	T	p.S768*
TGCT	TCGA-X3-A8G4-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000559274.1,ENST00000429436.2	chr14	103941460:103941547:103946723:103946827:103958113:103958371,	103946724	103946827	103946751	103946751	Nonsense_Mutation	C	T	p.R504*
TGCT	TCGA-X3-A8G4-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133789875	133789875	Nonsense_Mutation	G	A	p.R1249*
TGCT	TCGA-X3-A8G4-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713816	40713816	Nonsense_Mutation	T	A	p.C1618*
THCA	TCGA-DJ-A2Q2-01	DNMT3A	ENST00000402667.1,ENST00000321117.5,ENST00000470983.1,ENST00000496570.1,ENST00000380756.3,ENST00000264709.3,ENST00000380746.4	chr2	25469919:25470027:25470459:25470618:25470905:25471121,	25470460	25470618	25470535	25470535	Nonsense_Mutation	C	T	p.W313X
THCA	TCGA-EL-A4KI-01	SLC47A1	ENST00000575377.1,ENST00000436810.2,ENST00000573009.1,ENST00000495425.2,ENST00000571335.1,ENST00000270570.4,ENST00000395585.1,ENST00000457293.1	chr17	19463500:19463609:19463730:19463806:19470102:19470172,	19463731	19463806	19463805	19463805	Nonsense_Mutation	C	T	p.R369X
THCA	TCGA-EM-A3FP-01	GNG5	ENST00000370645.4,ENST00000370641.3	chr1	84964011:84964231:84967508:84967653:84971693:84971984,	84967509	84967653	84967626	84967626	Nonsense_Mutation	G	A	p.Q37X
THCA	TCGA-DJ-A1QL-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113705033	113705033	Nonsense_Mutation	G	A	p.R187X
THCA	TCGA-DJ-A1QQ-01	NINL	ENST00000278886.6	chr20	25450626:25450731:25456678:25457725:25459558:25459663,	25456679	25457725	25457075	25457075	Nonsense_Mutation	G	T	p.S951X
THCA	TCGA-ET-A25K-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5250183:5250220:5253745:5253924:5257653:5257785,	5253746	5253924	5253769	5253769	Nonsense_Mutation	C	T	p.R270X
THCA	TCGA-FE-A22Z-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696275	17696275	Nonsense_Mutation	C	T	p.R5X
THCA	TCGA-DJ-A1QG-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169806067:169806253:169811557:169811680:169812814:169812910,	169811558	169811680	169811624	169811624	Nonsense_Mutation	C	T	p.Q598X
THCA	TCGA-EL-A4KG-01	GAK	ENST00000511163.1,ENST00000314167.4,ENST00000509566.1,ENST00000510799.1	chr4	845640:845762:853393:853510:858909:859032,	853394	853510	853445	853445	Nonsense_Mutation	G	A	p.Q1078X
THCA	TCGA-BJ-A3PT-01	CHEK2	ENST00000382580.2,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000404276.1	chr22	29091114:29091230:29091697:29091861:29095825:29095925,29091114:29091230:29091697:29091861:29092888:29092975,	29091698	29091861	29091787	29091787	Nonsense_Mutation	G	C	p.Y361X
THCA	TCGA-EM-A4FQ-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15X
THCA	TCGA-EM-A3O6-01	DHX30	ENST00000445061.1	chr3	47852146:47852201:47859511:47859607:47868836:47868967,	47859512	47859607	47859529	47859529	Nonsense_Mutation	C	T	p.Q16X
THCA	TCGA-EL-A3T1-01	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870709	101870709	Nonsense_Mutation	G	T	p.E1065X
THCA	TCGA-EM-A3O8-01	MOV10	ENST00000468624.1,ENST00000496577.1,ENST00000369645.1,ENST00000413052.2,ENST00000369644.1,ENST00000357443.2	chr1	113232615:113232720:113234286:113234421:113235382:113235551,	113234287	113234421	113234306	113234306	Nonsense_Mutation	G	T	p.E286X
THCA	TCGA-DJ-A3VL-01	ZNF415	ENST00000500065.4	chr19	53613129:53613161:53619565:53619686:53625914:53625996,53613129:53613161:53619565:53619686:53625656:53625865,	53619566	53619686	53619641	53619641	Nonsense_Mutation	T	A	p.K21X
THCA	TCGA-ET-A25J-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745373	135745373	Nonsense_Mutation	G	A	p.R357X
THCA	TCGA-FK-A3SG-01	BDP1	ENST00000358731.4,ENST00000380675.2	chr5	70855808:70856064:70858100:70858347:70860580:70863647,	70858101	70858347	70858315	70858315	Nonsense_Mutation	C	T	p.Q2571X
THCA	TCGA-DJ-A2Q4-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15X
THCA	TCGA-MK-A4N7-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559316	210559316	Nonsense_Mutation	G	T	p.E808X
THCA	TCGA-MK-A4N7-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559316	210559316	Nonsense_Mutation	G	T	p.E808X
THCA	TCGA-EL-A3H8-01	CEP95	ENST00000553956.2,ENST00000556440.2	chr17	62510365:62510476:62512840:62512946:62515438:62515554,	62512841	62512946	62512852	62512852	Nonsense_Mutation	C	T	p.Q127X
THCA	TCGA-DJ-A13R-01	CLCN3	ENST00000507875.1,ENST00000513761.1,ENST00000347613.4,ENST00000504131.2,ENST00000360642.3	chr4	170625148:170625335:170628018:170628417:170634229:170634338,	170628019	170628417	170628369	170628369	Nonsense_Mutation	C	T	p.Q701X
THCA	TCGA-EM-A2CJ-01	TTC16	ENST00000373289.3	chr9	130486398:130486643:130487034:130487176:130488517:130488581,	130487035	130487176	130487098	130487098	Nonsense_Mutation	T	-	p.L394X
THCA	TCGA-EL-A4KD-01	TMEM145	ENST00000598766.1,ENST00000301204.3	chr19	42821021:42821115:42821860:42822033:42824468:42824589,	42821861	42822033	42821993	42821993	Nonsense_Mutation	C	T	p.Q345X
THCA	TCGA-DJ-A13L-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43172670:43172853:43173000:43173161:43173744:43173973,	43173001	43173161	43173160	43173160	Nonsense_Mutation	C	T	p.Q1598X
THCA	TCGA-ET-A3DO-01	SLC25A43	ENST00000493093.1,ENST00000217909.7	chrX	118544152:118544325:118585971:118586106:118586827:118586904,	118585972	118586106	118585975	118585975	Nonsense_Mutation	C	T	p.Q232X
THCA	TCGA-EL-A3ZR-01	LRP10	ENST00000551466.1,ENST00000546834.1,ENST00000359591.4	chr14	23344344:23344454:23344563:23345581:23345897:23346027,	23344564	23345581	23345001	23345001	Nonsense_Mutation	C	T	p.Q282X
THCA	TCGA-DJ-A2Q0-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968514	99968514	Nonsense_Mutation	G	T	p.E215X
THCA	TCGA-DJ-A2Q0-01	ICMT	ENST00000489498.1,ENST00000343813.5	chr1	6284658:6285322:6291961:6292179:6294945:6295030,6284658:6285322:6291961:6292179:6293533:6293703,	6291962	6292179	6291980	6291980	Nonsense_Mutation	G	T	p.Y218X
THCA	TCGA-DJ-A2Q0-01	JAKMIP2	ENST00000265272.5	chr5	147040510:147041008:147051240:147051517:147162018:147162105,	147051241	147051517	147051354	147051354	Nonsense_Mutation	G	A	p.R6X
THCA	TCGA-DE-A0Y2-01	VAPA	ENST00000584796.1,ENST00000583475.1,ENST00000400000.2,ENST00000583879.1	chr18	9944920:9945055:9950391:9950565:9954049:9954140,9936982:9937063:9950391:9950565:9954049:9954140,	9950392	9950565	9950521	9950521	Nonsense_Mutation	C	T	p.Q228X
THCA	TCGA-DE-A0Y2-01	ZFAND5	ENST00000376960.4,ENST00000237937.3,ENST00000488164.1,ENST00000376962.5,ENST00000471197.1,ENST00000343431.2	chr9	74970870:74971017:74971846:74971972:74974333:74974437,	74971847	74971972	74971943	74971943	Nonsense_Mutation	G	A	p.Q133X
THCA	TCGA-BJ-A0Z0-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711928	89711928	Nonsense_Mutation	A	-	p.L182X
THCA	TCGA-FY-A3I5-01	RUNDC1	ENST00000361677.1	chr17	41139272:41139431:41141357:41141556:41142333:41142453,	41141358	41141556	41141502	41141502	Nonsense_Mutation	G	T	p.E268X
THCA	TCGA-FY-A3I5-01	EFCAB1	ENST00000262103.3	chr8	49643098:49643203:49643906:49644062:49647652:49647791,	49643907	49644062	49643961	49643961	Nonsense_Mutation	G	A	p.R54X
THCA	TCGA-EM-A3AQ-01	ANKRD24	ENST00000600132.1,ENST00000318934.4,ENST00000262970.5	chr19	4216546:4218160:4219587:4219755:4222666:4222792,	4219588	4219755	4219657	4219657	Nonsense_Mutation	C	T	p.Q1025X
THCA	TCGA-EM-A3AJ-01	ADAMTS18	ENST00000282849.5	chr16	77393214:77393320:77396001:77396161:77397698:77397782,	77396002	77396161	77396028	77396028	Nonsense_Mutation	C	T	p.W397X
THCA	TCGA-KS-A4IB-01	NSUN6	ENST00000377304.4	chr10	18837040:18837166:18840751:18840900:18874877:18875022,	18840752	18840900	18840835	18840835	Nonsense_Mutation	C	A	p.G330X
THCA	TCGA-EM-A1YB-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192X
THCA	TCGA-CE-A3MD-01	ERC1	ENST00000538971.2,ENST00000543086.3,ENST00000440394.3,ENST00000347735.6	chr12	1219357:1219513:1225031:1225199:1250785:1250906,	1225032	1225199	1225197	1225197	Nonsense_Mutation	G	T	p.E495X
THCA	TCGA-DJ-A4UT-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560177	109560177	Nonsense_Mutation	G	A	p.Q69X
THCA	TCGA-J8-A3YF-01	EYA3	ENST00000373863.3,ENST00000436342.2,ENST00000540618.1,ENST00000471498.1,ENST00000545175.1	chr1	28374893:28374937:28384504:28384605:28415034:28415075,	28384505	28384605	28384518	28384518	Nonsense_Mutation	A	T	p.L7*
THCA	TCGA-ET-A3DO-01	SLC25A43	ENST00000493093.1,ENST00000217909.7	chrX	118544152:118544325:118585971:118586106:118586827:118586904,	118585972	118586106	118585975	118585975	Nonsense_Mutation	C	T	p.Q232*
THCA	TCGA-EM-A3SX-01	TTK	ENST00000369798.2,ENST00000515751.1	chr6	80724179:80724303:80732040:80732189:80736094:80736231,	80732041	80732189	80732143	80732143	Nonsense_Mutation	C	G	p.S404*
THCA	TCGA-EL-A3ZH-01	ACSS2	ENST00000253382.5,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33501555:33501628:33501898:33501974:33502125:33502240,	33501899	33501974	33501967	33501967	Nonsense_Mutation	C	T	p.Q238*
THCA	TCGA-CE-A3MD-01	ERC1	ENST00000538971.2,ENST00000543086.3,ENST00000440394.3,ENST00000347735.6	chr12	1219357:1219513:1225031:1225199:1250785:1250906,	1225032	1225199	1225197	1225197	Nonsense_Mutation	G	T	p.E523*
THCA	TCGA-ET-A39J-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118495649:118495775:118498020:118499366:118501923:118502196,	118498021	118499366	118498713	118498713	Nonsense_Mutation	C	T	p.R392*
THCA	TCGA-EL-A3D6-01	SERPINA1	ENST00000489769.1	chr14	94845800:94845948:94846987:94847478:94848928:94849578,	94846988	94847478	94847272	94847272	Nonsense_Mutation	G	A	p.Q285*
THCA	TCGA-EL-A3D6-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000355814.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4,ENST00000440909.1	chr14	94845800:94845948:94847207:94847478:94848928:94849578,	94847208	94847478	94847272	94847272	Nonsense_Mutation	G	A	p.Q285*
THCA	TCGA-DE-A7U5-01	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000591698.1	chr19	33378657:33378747:33390762:33390904:33392150:33392318,	33390763	33390904	33390789	33390789	Nonsense_Mutation	G	A	p.Q617*
THCA	TCGA-BJ-A191-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15*
THCA	TCGA-BJ-A3PT-01	CHEK2	ENST00000382580.2,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000404276.1	chr22	29091114:29091230:29091697:29091861:29095825:29095925,29091114:29091230:29091697:29091861:29092888:29092975,	29091698	29091861	29091787	29091787	Nonsense_Mutation	G	C	p.Y169*
THCA	TCGA-ET-A25K-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5250183:5250220:5253745:5253924:5257653:5257785,	5253746	5253924	5253769	5253769	Nonsense_Mutation	C	T	p.R270*
THCA	TCGA-EM-A3O6-01	DHX30	ENST00000445061.1	chr3	47852146:47852201:47859511:47859607:47868836:47868967,	47859512	47859607	47859529	47859529	Nonsense_Mutation	C	T	p.Q16*
THCA	TCGA-DJ-A2PT-01	TBC1D7	ENST00000422136.1,ENST00000606214.1,ENST00000356436.4,ENST00000450347.1,ENST00000379307.2,ENST00000452989.1,ENST00000379300.3,ENST00000446018.1	chr6	13306722:13306759:13307831:13307977:13316802:13316940,	13307832	13307977	13307947	13307947	Nonsense_Mutation	C	A	p.E157*
THCA	TCGA-DJ-A2PT-01	TBC1D7	ENST00000607658.1	chr6	13306722:13306759:13307827:13307977:13316802:13316940,	13307828	13307977	13307947	13307947	Nonsense_Mutation	C	A	p.E157*
THCA	TCGA-EL-A3ZO-01	SPG11	ENST00000535302.2	chr15	44859621:44859790:44864880:44865018:44865744:44865881,44862750:44862856:44864880:44865018:44865744:44865881,44862750:44862856:44864880:44865018:44876011:44876133,	44864881	44865018	44864971	44864971	Nonsense_Mutation	G	A	p.Q2085*
THCA	TCGA-DJ-A13R-01	CLCN3	ENST00000507875.1,ENST00000513761.1,ENST00000347613.4,ENST00000504131.2,ENST00000360642.3	chr4	170625148:170625335:170628018:170628417:170634229:170634338,	170628019	170628417	170628369	170628369	Nonsense_Mutation	C	T	p.Q701*
THCA	TCGA-EM-A2CN-01	LAMC3	ENST00000361069.4,ENST00000480883.1	chr9	133914517:133914635:133917023:133917122:133920910:133920954,	133917024	133917122	133917103	133917103	Nonsense_Mutation	G	T	p.E455*
THCA	TCGA-DE-A4MB-01	FMO3	ENST00000367755.4,ENST00000392085.2,ENST00000542847.1,ENST00000538429.1	chr1	171079938:171080138:171083146:171083502:171085347:171085420,	171083147	171083502	171083277	171083277	Nonsense_Mutation	G	T	p.E320*
THCA	TCGA-EM-A4FU-01	NOL9	ENST00000464383.1,ENST00000377705.5	chr1	6593339:6593501:6601889:6601987:6604885:6604979,	6601890	6601987	6601950	6601950	Nonsense_Mutation	G	A	p.Q339*
THCA	TCGA-EM-A4FQ-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15*
THCA	TCGA-FY-A3I5-01	RUNDC1	ENST00000361677.1	chr17	41139272:41139431:41141357:41141556:41142333:41142453,	41141358	41141556	41141502	41141502	Nonsense_Mutation	G	T	p.E268*
THCA	TCGA-FY-A3I5-01	EFCAB1	ENST00000262103.3	chr8	49643098:49643203:49643906:49644062:49647652:49647791,	49643907	49644062	49643961	49643961	Nonsense_Mutation	G	A	p.R54*
THCA	TCGA-BJ-A28R-01	MBTPS1	ENST00000569770.1,ENST00000343411.3,ENST00000565863.1	chr16	84115356:84115513:84118587:84118739:84120962:84121065,	84118588	84118739	84118642	84118642	Nonsense_Mutation	G	C	p.S411*
THCA	TCGA-ET-A2MX-01	STIM1	ENST00000533977.1,ENST00000531332.1,ENST00000300737.4	chr11	4104492:4104728:4107706:4107773:4112511:4112663,	4107707	4107773	4107718	4107718	Nonsense_Mutation	C	T	p.Q496*
THCA	TCGA-ET-A25J-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745373	135745373	Nonsense_Mutation	G	A	p.R357*
THCA	TCGA-DE-A0Y2-01	ZFAND5	ENST00000376960.4,ENST00000237937.3,ENST00000488164.1,ENST00000376962.5,ENST00000471197.1,ENST00000343431.2	chr9	74970870:74971017:74971846:74971972:74974333:74974437,	74971847	74971972	74971943	74971943	Nonsense_Mutation	G	A	p.Q133*
THCA	TCGA-DE-A0Y2-01	VAPA	ENST00000584796.1,ENST00000583475.1,ENST00000400000.2,ENST00000583879.1	chr18	9944920:9945055:9950391:9950565:9954049:9954140,9936982:9937063:9950391:9950565:9954049:9954140,	9950392	9950565	9950521	9950521	Nonsense_Mutation	C	T	p.Q183*
THCA	TCGA-EL-A3CU-01	DGKQ	ENST00000273814.3	chr4	959278:959317:959715:959866:960253:960315,	959716	959866	959854	959854	Nonsense_Mutation	G	A	p.Q481*
THCA	TCGA-EL-A3CU-01	DGKQ	ENST00000502309.1	chr4	959278:959317:959851:960089:960253:960315,	959852	960089	959854	959854	Nonsense_Mutation	G	A	p.Q481*
THCA	TCGA-DJ-A3V6-01	CDK5RAP2	ENST00000359309.3	chr9	123202067:123202250:123210172:123210404:123215733:123216151,	123210173	123210404	123210305	123210305	Nonsense_Mutation	G	A	p.Q965*
THCA	TCGA-FE-A22Z-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696275	17696275	Nonsense_Mutation	C	T	p.R5*
THCA	TCGA-FY-A3W9-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639352	17639352	Nonsense_Mutation	C	A	p.E601*
THCA	TCGA-FY-A76V-01	SLC26A10	ENST00000490243.1,ENST00000474791.1,ENST00000440686.1,ENST00000474359.2,ENST00000487816.1	chr12	58018905:58018939:58019018:58019101:58019192:58019247,	58019019	58019101	58019099	58019099	Nonsense_Mutation	C	T	p.Q487*
THCA	TCGA-FY-A76V-01	SLC26A10	ENST00000320442.4,ENST00000379218.2	chr12	58018905:58018939:58019018:58019113:58019192:58019247,	58019019	58019113	58019099	58019099	Nonsense_Mutation	C	T	p.Q487*
THCA	TCGA-FK-A3SG-01	BDP1	ENST00000358731.4,ENST00000380675.2	chr5	70855808:70856064:70858100:70858347:70860580:70863647,	70858101	70858347	70858315	70858315	Nonsense_Mutation	C	T	p.Q2571*
THCA	TCGA-EL-A3T0-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475708	32475708	Nonsense_Mutation	C	A	p.E409*
THCA	TCGA-DJ-A2Q0-01	JAKMIP2	ENST00000265272.5	chr5	147040510:147041008:147051240:147051517:147162018:147162105,	147051241	147051517	147051354	147051354	Nonsense_Mutation	G	A	p.R6*
THCA	TCGA-DJ-A2Q0-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968514	99968514	Nonsense_Mutation	G	T	p.E215*
THCA	TCGA-DJ-A2Q0-01	ICMT	ENST00000489498.1,ENST00000343813.5	chr1	6284658:6285322:6291961:6292179:6294945:6295030,6284658:6285322:6291961:6292179:6293533:6293703,	6291962	6292179	6291980	6291980	Nonsense_Mutation	G	T	p.Y218*
THCA	TCGA-KS-A41F-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878646	190878646	Nonsense_Mutation	G	T	p.E176*
THCA	TCGA-DJ-A3V7-01	MED12L	ENST00000474524.1	chr3	151112454:151112655:151127030:151127120:151129065:151129295,	151127031	151127120	151127118	151127118	Nonsense_Mutation	C	T	p.Q1935*
THCA	TCGA-E3-A3E5-01	XYLB	ENST00000207870.3,ENST00000472721.1,ENST00000542835.1,ENST00000424034.1	chr3	38418411:38418482:38420736:38420833:38436995:38437054,	38420737	38420833	38420767	38420767	Nonsense_Mutation	C	T	p.R409*
THCA	TCGA-EL-A3ZR-01	LRP10	ENST00000551466.1,ENST00000546834.1,ENST00000359591.4	chr14	23344344:23344454:23344563:23345581:23345897:23346027,	23344564	23345581	23345001	23345001	Nonsense_Mutation	C	T	p.Q282*
THCA	TCGA-EM-A3O8-01	MOV10	ENST00000468624.1,ENST00000496577.1,ENST00000369645.1,ENST00000413052.2,ENST00000369644.1,ENST00000357443.2	chr1	113232615:113232720:113234286:113234421:113235382:113235551,	113234287	113234421	113234306	113234306	Nonsense_Mutation	G	T	p.E230*
THCA	TCGA-EL-A3T1-01	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870709	101870709	Nonsense_Mutation	G	T	p.E1076*
THCA	TCGA-DJ-A2Q2-01	DNMT3A	ENST00000402667.1,ENST00000321117.5,ENST00000470983.1,ENST00000496570.1,ENST00000380756.3,ENST00000264709.3,ENST00000380746.4	chr2	25469919:25470027:25470459:25470618:25470905:25471121,	25470460	25470618	25470535	25470535	Nonsense_Mutation	C	T	p.W313*
THCA	TCGA-DJ-A4UT-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560177	109560177	Nonsense_Mutation	G	A	p.Q69*
THCA	TCGA-DJ-A4UT-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560186	109560186	Nonsense_Mutation	G	A	p.Q66*
THCA	TCGA-FY-A3NN-01	PTPRU	ENST00000323874.8,ENST00000460170.2,ENST00000345512.3,ENST00000373779.3,ENST00000428026.2,ENST00000356870.3	chr1	29585772:29585854:29585960:29586076:29586381:29586556,	29585961	29586076	29586031	29586031	Nonsense_Mutation	C	A	p.C210*
THCA	TCGA-EM-A1YB-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578275	7578275	Nonsense_Mutation	G	A	p.Q192*
THCA	TCGA-EL-A4KD-01	TMEM145	ENST00000598766.1,ENST00000301204.3	chr19	42821021:42821115:42821860:42822033:42824468:42824589,	42821861	42822033	42821993	42821993	Nonsense_Mutation	C	T	p.Q369*
THCA	TCGA-BJ-A192-01	AOC1	ENST00000416793.2,ENST00000360937.4	chr7	150549606:150549646:150553542:150555128:150555850:150556136,	150553543	150555128	150554081	150554081	Nonsense_Mutation	C	T	p.Q175*
THCA	TCGA-DJ-A4V4-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64780025	64780025	Nonsense_Mutation	G	T	p.E473*
THCA	TCGA-DJ-A3VG-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	470423:470525:472897:473008:476362:476446,	472898	473008	472948	472948	Nonsense_Mutation	G	A	p.R191*
THCA	TCGA-EM-A3FP-01	GNG5	ENST00000370645.4,ENST00000370641.3	chr1	84964011:84964231:84967508:84967653:84971693:84971984,	84967509	84967653	84967626	84967626	Nonsense_Mutation	G	A	p.Q37*
THCA	TCGA-DJ-A1QG-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169806067:169806253:169811557:169811680:169812814:169812910,	169811558	169811680	169811624	169811624	Nonsense_Mutation	C	T	p.Q598*
THCA	TCGA-DE-A4MD-06	TCTN2	ENST00000426174.2,ENST00000303372.5	chr12	124177204:124177270:124179388:124179523:124179766:124179844,	124179389	124179523	124179517	124179517	Nonsense_Mutation	C	T	p.Q410*
THCA	TCGA-DE-A4MD-01	TCTN2	ENST00000426174.2,ENST00000303372.5	chr12	124177204:124177270:124179388:124179523:124179766:124179844,	124179389	124179523	124179517	124179517	Nonsense_Mutation	C	T	p.Q410*
THCA	TCGA-KS-A4IB-01	NSUN6	ENST00000377304.4	chr10	18837040:18837166:18840751:18840900:18874877:18875022,	18840752	18840900	18840835	18840835	Nonsense_Mutation	C	A	p.G330*
THCA	TCGA-EM-A3ST-01	TGM4	ENST00000296125.4	chr3	44945375:44945479:44948440:44948692:44951581:44951860,	44948441	44948692	44948680	44948680	Nonsense_Mutation	A	T	p.K439*
THCA	TCGA-EM-A3AJ-01	ADAMTS18	ENST00000282849.5	chr16	77393214:77393320:77396001:77396161:77397698:77397782,	77396002	77396161	77396028	77396028	Nonsense_Mutation	C	T	p.W397*
THCA	TCGA-EL-A4KG-01	GAK	ENST00000511163.1,ENST00000314167.4,ENST00000509566.1,ENST00000510799.1	chr4	845640:845762:853393:853510:858909:859032,	853394	853510	853445	853445	Nonsense_Mutation	G	A	p.Q1078*
THCA	TCGA-EL-A4KG-01	NDUFAF6	ENST00000520757.1,ENST00000396124.4,ENST00000286687.4	chr8	96037295:96037433:96044222:96044322:96047681:96047804,	96044223	96044322	96044311	96044311	Nonsense_Mutation	G	A	p.W2*
THCA	TCGA-EL-A4KG-01	NDUFAF6	ENST00000517976.1,ENST00000520632.1,ENST00000454358.2	chr8	96037295:96037433:96044222:96044326:96047681:96047804,	96044223	96044326	96044311	96044311	Nonsense_Mutation	G	A	p.W2*
THCA	TCGA-4C-A93U-01	STOX2	ENST00000438269.1,ENST00000308497.4	chr4	184826508:184828109:184922477:184922630:184930310:184930643,	184922478	184922630	184922519	184922519	Nonsense_Mutation	C	T	p.Q70*
THCA	TCGA-4C-A93U-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
THCA	TCGA-4C-A93U-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971120	21971120	Nonsense_Mutation	G	A	p.R80*
THCA	TCGA-DJ-A2Q1-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230663590:230663765:230663998:230664099:230666967:230667175,	230663999	230664099	230664036	230664036	Nonsense_Mutation	G	T	p.Y1015*
THCA	TCGA-DJ-A1QL-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113705033	113705033	Nonsense_Mutation	G	A	p.R187*
THCA	TCGA-EM-A3AQ-01	ANKRD24	ENST00000600132.1,ENST00000318934.4,ENST00000262970.5	chr19	4216546:4218160:4219587:4219755:4222666:4222792,	4219588	4219755	4219657	4219657	Nonsense_Mutation	C	T	p.Q1025*
THCA	TCGA-DJ-A2Q4-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15*
THCA	TCGA-MK-A4N7-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559316	210559316	Nonsense_Mutation	G	T	p.E808*
THCA	TCGA-MK-A4N7-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559316	210559316	Nonsense_Mutation	G	T	p.E808*
THCA	TCGA-BJ-A2NA-01	MRS2	ENST00000378353.1,ENST00000543597.1,ENST00000378386.3	chr6	24408635:24408672:24409688:24409801:24412449:24412623,	24409689	24409801	24409748	24409748	Nonsense_Mutation	C	T	p.Q121*
THCA	TCGA-EL-A3H8-01	CEP95	ENST00000553956.2,ENST00000556440.2	chr17	62510365:62510476:62512840:62512946:62515438:62515554,	62512841	62512946	62512852	62512852	Nonsense_Mutation	C	T	p.Q127*
THYM	TCGA-5K-AAAP-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61833456	61833456	Nonsense_Mutation	C	A	p.E2395X
THYM	TCGA-5K-AAAP-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90856011	90856011	Nonsense_Mutation	C	T	p.Q394X
THYM	TCGA-5K-AAAP-01	PTK2B	ENST00000420218.2,ENST00000544172.1,ENST00000346049.5,ENST00000338238.4,ENST00000517339.1,ENST00000397501.1,ENST00000397497.4	chr8	27296825:27296915:27297753:27297958:27300391:27300500,	27297754	27297958	27297768	27297768	Nonsense_Mutation	G	T	p.E617X
THYM	TCGA-5K-AAAP-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50949977:50950016:50955163:50955243:50978727:50978968,	50955164	50955243	50955204	50955204	Nonsense_Mutation	C	A	p.E15X
THYM	TCGA-XM-A8RC-01	ZEB1	ENST00000560721.2	chr10	31749965:31750166:31791275:31791437:31799600:31799803,	31791276	31791437	31791389	31791389	Nonsense_Mutation	G	T	p.E146X
THYM	TCGA-XM-A8RC-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4,ENST00000392202.3,ENST00000407449.1,ENST00000308862.6,ENST00000452564.1	chr2	209153452:209153542:209163364:209163503:209165660:209165818,	209163365	209163503	209163421	209163421	Nonsense_Mutation	C	A	p.S323X
THYM	TCGA-XM-A8RC-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56708536:56708711:56711472:56711779:56715015:56715165,	56711473	56711779	56711677	56711677	Nonsense_Mutation	G	T	p.E583X
THYM	TCGA-XU-AAY1-01	ULK1	ENST00000321867.4	chr12	132396557:132396634:132397742:132397803:132398291:132398381,	132397743	132397803	132397757	132397757	Nonsense_Mutation	G	T	p.E371X
THYM	TCGA-XU-AAY1-01	MAST1	ENST00000251472.4	chr19	12975859:12975992:12976129:12976295:12976530:12976632,	12976130	12976295	12976160	12976160	Nonsense_Mutation	G	T	p.E557X
THYM	TCGA-X7-A8DB-01	RFX1	ENST00000589760.1,ENST00000589239.1	chr19	14094297:14094407:14104336:14104707:14116914:14117074,	14104337	14104707	14104361	14104361	Nonsense_Mutation	G	A	p.Q99X
THYM	TCGA-4V-A9QM-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	95995671:95995877:96005702:96006378:96012072:96012255,	96005703	96006378	96005954	96005954	Nonsense_Mutation	T	A	p.L891X
THYM	TCGA-4V-A9QM-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96064238:96064402:96066183:96066445:96068337:96068456,	96066184	96066445	96066442	96066442	Nonsense_Mutation	C	T	p.R1961X
THYM	TCGA-YT-A95D-01	TTN	ENST00000359218.5	chr2	179617850:179617907:179622268:179622643:179623710:179623899,	179622269	179622643	179622336	179622336	Nonsense_Mutation	G	T	p.Y3537X
THYM	TCGA-YT-A95D-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10623135:10623249:10624425:10624511:10625004:10625032,	10624426	10624511	10624465	10624465	Nonsense_Mutation	C	A	p.E807X
THYM	TCGA-YT-A95D-01	SERPING1	ENST00000378323.4	chr11	57365743:57365794:57367336:57367850:57369507:57369642,	57367337	57367850	57367469	57367469	Nonsense_Mutation	G	T	p.E57X
THYM	TCGA-YT-A95D-01	SERPING1	ENST00000378324.2	chr11	57365743:57365794:57367351:57367850:57369507:57369642,57365162:57365195:57367351:57367850:57369507:57369642,	57367352	57367850	57367469	57367469	Nonsense_Mutation	G	T	p.E57X
THYM	TCGA-XU-A932-01	SETD1A	ENST00000262519.8	chr16	30976921:30977707:30978204:30978381:30978821:30978909,	30978205	30978381	30978241	30978241	Nonsense_Mutation	G	T	p.E848X
THYM	TCGA-XU-A932-01	WDR70	ENST00000511906.1,ENST00000510699.1,ENST00000265107.4	chr5	37516615:37516692:37605165:37605340:37697756:37697856,	37605166	37605340	37605278	37605278	Nonsense_Mutation	G	T	p.G344X
THYM	TCGA-XU-A932-01	TTC24	ENST00000368237.3,ENST00000368236.3	chr1	156555504:156555618:156555740:156555837:156556260:156556562,	156555741	156555837	156555799	156555799	Nonsense_Mutation	C	A	p.Y543X
THYM	TCGA-ZB-A96F-01	CTDSPL2	ENST00000558966.1,ENST00000260327.4	chr15	44778751:44778898:44782981:44783197:44788577:44788656,	44782982	44783197	44783062	44783062	Nonsense_Mutation	G	T	p.E186X
THYM	TCGA-ZB-A96F-01	IQCB1	ENST00000349820.6,ENST00000393650.3,ENST00000310864.6	chr3	121544897:121545027:121547316:121547479:121547707:121547818,	121547317	121547479	121547449	121547449	Nonsense_Mutation	G	T	p.S44X
THYM	TCGA-ZB-A96F-01	UBAP2	ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33941646:33941860:33943417:33943587:33944362:33944637,	33943418	33943587	33943452	33943452	Nonsense_Mutation	G	A	p.Q561X
THYM	TCGA-ZB-A96F-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116636077:116636162:116640844:116640938:116643537:116643703,	116640845	116640938	116640874	116640874	Nonsense_Mutation	C	A	p.E70X
THYM	TCGA-ZB-A96F-01	NPNT	ENST00000379987.2,ENST00000427316.2,ENST00000453617.2,ENST00000503451.1,ENST00000514837.1	chr4	106861670:106861793:106863463:106863859:106879627:106879714,	106863464	106863859	106863847	106863847	Nonsense_Mutation	G	T	p.G413X
THYM	TCGA-XU-A92R-01	TRIM24	ENST00000343526.4	chr7	138235807:138235925:138239442:138239711:138252225:138252399,	138239443	138239711	138239466	138239466	Nonsense_Mutation	G	T	p.E429X
THYM	TCGA-XU-A92R-01	TRIM24	ENST00000497516.1,ENST00000415680.2	chr7	138235807:138235925:138239442:138239609:138252225:138252399,	138239443	138239609	138239466	138239466	Nonsense_Mutation	G	T	p.E429X
THYM	TCGA-XU-A92R-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000571299.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67986144:67986328:67988545:67988676:67991644:67991699,	67988546	67988676	67988609	67988609	Nonsense_Mutation	G	T	p.C206X
THYM	TCGA-XU-A92R-01	SNCA	ENST00000394991.3	chr4	90749293:90749335:90756697:90756843:90758112:90758227,	90756698	90756843	90756800	90756800	Nonsense_Mutation	C	A	p.G7X
THYM	TCGA-XU-A92R-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64780409	64780409	Nonsense_Mutation	G	T	p.E601X
THYM	TCGA-XU-A92R-01	ANP32B	ENST00000339399.4	chr9	100767290:100767435:100773552:100773671:100774702:100774754,	100773553	100773671	100773666	100773666	Nonsense_Mutation	G	T	p.E211X
THYM	TCGA-X7-A8DJ-01	PLCG2	ENST00000359376.3	chr16	81979779:81979868:81990299:81990484:81991560:81991899,	81990300	81990484	81990468	81990468	Nonsense_Mutation	G	T	p.E1247X
THYM	TCGA-X7-A8DJ-01	UAP1	ENST00000367924.1,ENST00000367925.1,ENST00000271469.3	chr1	162560112:162560301:162567581:162567648:162569060:162569589,162562524:162562572:162567581:162567648:162569060:162569589,	162567582	162567648	162567610	162567610	Nonsense_Mutation	C	T	p.Q463X
THYM	TCGA-4V-A9QU-01	NELL1	ENST00000298925.5,ENST00000527873.1,ENST00000357134.5,ENST00000529595.1,ENST00000532434.1	chr11	20805231:20805376:20869128:20869299:20906989:20907086,	20869129	20869299	20869240	20869240	Nonsense_Mutation	G	A	p.W149X
THYM	TCGA-4V-A9QR-01	POLD3	ENST00000532497.1,ENST00000263681.2,ENST00000527458.1,ENST00000524752.1	chr11	74336548:74336618:74340261:74340368:74345627:74345740,	74340262	74340368	74340296	74340296	Nonsense_Mutation	A	T	p.K312X
THYM	TCGA-XU-A92T-01	RSPH9	ENST00000372165.4	chr6	43624313:43624460:43634160:43634257:43638525:43639331,	43634161	43634257	43634178	43634178	Nonsense_Mutation	C	T	p.Q215X
THYM	TCGA-XU-A92T-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216279559:216279681:216283964:216284108:216285395:216285524,	216283965	216284108	216283987	216283987	Nonsense_Mutation	G	T	p.C599X
THYM	TCGA-XU-A92T-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507154	74507154	Nonsense_Mutation	C	T	p.W487X
THYM	TCGA-XU-A92T-01	ATP4A	ENST00000592131.1,ENST00000262623.3	chr19	36041911:36042013:36042348:36042482:36043938:36044084,	36042349	36042482	36042365	36042365	Nonsense_Mutation	G	A	p.Q957X
THYM	TCGA-XU-A92W-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47886619	47886619	Nonsense_Mutation	A	T	p.L577X
THYM	TCGA-ZB-A96Q-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985146	36985146	Nonsense_Mutation	G	T	p.E622X
THYM	TCGA-ZB-A96Q-01	CRYBG3	ENST00000182096.4	chr3	97614802:97614929:97617726:97617869:97617980:97618107,	97617727	97617869	97617817	97617817	Nonsense_Mutation	G	T	p.E2598X
THYM	TCGA-ZB-A96Q-01	DTNA	ENST00000348997.5,ENST00000269190.7,ENST00000399113.3,ENST00000444659.1,ENST00000269191.6	chr18	32407556:32407640:32418057:32418135:32428259:32428310,32409363:32409453:32418057:32418135:32418708:32418801,32407556:32407640:32418057:32418135:32418708:32418801,	32418058	32418135	32418083	32418083	Nonsense_Mutation	G	T	p.E374X
THYM	TCGA-ZB-A96Q-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515286	75515286	Nonsense_Mutation	G	T	p.S358X
THYM	TCGA-ZB-A96Q-01	TULP4	ENST00000367097.3,ENST00000367094.2	chr6	158834096:158834225:158850767:158850929:158870027:158870208,	158850768	158850929	158850885	158850885	Nonsense_Mutation	G	T	p.E167X
THYM	TCGA-XU-A92Y-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50053477	50053477	Nonsense_Mutation	G	T	p.E770X
THYM	TCGA-XU-A92Y-01	CYP2A6	ENST00000600495.1	chr19	41354518:41354668:41355722:41355885:41356141:41356352,	41355723	41355885	41355765	41355765	Nonsense_Mutation	G	A	p.R101X
THYM	TCGA-XU-A92Y-01	PNPLA3	ENST00000497129.1,ENST00000406117.2,ENST00000216180.3,ENST00000423180.2	chr22	44328886:44328967:44330485:44330546:44332930:44333152,	44330486	44330546	44330503	44330503	Nonsense_Mutation	C	A	p.C238X
THYM	TCGA-XU-A92Y-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000426907.1,ENST00000262854.6	chrX	53565297:53565415:53565795:53566041:53566617:53566773,	53565796	53566041	53565934	53565934	Nonsense_Mutation	C	A	p.E3914X
THYM	TCGA-X7-A8D7-01	SGIP1	ENST00000371036.3,ENST00000371039.1	chr1	67154830:67154958:67155872:67155999:67160121:67160187,	67155873	67155999	67155999	67155999	Nonsense_Mutation	G	T	p.E524X
THYM	TCGA-XM-A8RG-01	DCAF12	ENST00000361264.4	chr9	34089409:34089588:34093283:34093446:34096713:34096779,	34093284	34093446	34093293	34093293	Nonsense_Mutation	G	A	p.R339X
THYM	TCGA-XM-A8RG-01	CEP164	ENST00000278935.3,ENST00000533675.1	chr11	117233119:117233254:117234144:117234222:117241795:117242182,	117234145	117234222	117234214	117234214	Nonsense_Mutation	G	T	p.E253X
THYM	TCGA-XM-A8RG-01	PFDN5	ENST00000550846.1	chr12	53689365:53689423:53691828:53691934:53693052:53693127,	53691829	53691934	53691835	53691835	Nonsense_Mutation	G	T	p.E97X
THYM	TCGA-X7-A8D6-01	MFGE8	ENST00000558029.1,ENST00000566497.1,ENST00000268151.7,ENST00000268150.8	chr15	89450425:89450607:89453022:89453154:89456477:89456490,	89453023	89453154	89453069	89453069	Nonsense_Mutation	G	T	p.Y53X
THYM	TCGA-X7-A8D6-01	CYTL1	ENST00000307746.4	chr4	5016870:5016961:5018562:5018691:5018861:5018906,	5018563	5018691	5018686	5018686	Nonsense_Mutation	G	T	p.Y68X
THYM	TCGA-X7-A8D6-01	TEX10	ENST00000537512.1	chr9	103108353:103108597:103108975:103109688:103115053:103115165,	103108976	103109688	103109481	103109481	Nonsense_Mutation	G	A	p.R133X
THYM	TCGA-X7-A8D6-01	PSMD1	ENST00000308696.6,ENST00000373635.4	chr2	232030584:232030731:232035279:232035435:232037248:232037474,	232035280	232035435	232035289	232035289	Nonsense_Mutation	G	T	p.G909X
THYM	TCGA-4V-A9QW-01	GALNT2	ENST00000541865.1	chr1	230381808:230381896:230384929:230385017:230390963:230391090,	230384930	230385017	230384974	230384974	Nonsense_Mutation	G	T	p.E288X
THYM	TCGA-4V-A9QW-01	CDA	ENST00000375071.3	chr1	20931420:20931532:20940334:20940392:20944944:20945396,	20940335	20940392	20940342	20940342	Nonsense_Mutation	C	T	p.Q92X
THYM	TCGA-4V-A9QW-01	EIF4B	ENST00000550704.1,ENST00000551002.1,ENST00000550390.1,ENST00000262056.9,ENST00000549481.1,ENST00000549645.1,ENST00000552490.1,ENST00000420463.3	chr12	53412643:53412790:53413693:53413810:53415589:53415619,	53413694	53413810	53413766	53413766	Nonsense_Mutation	G	T	p.E145X
THYM	TCGA-ZB-A96B-01	TTLL1	ENST00000331018.7,ENST00000439248.1,ENST00000440761.1,ENST00000266254.7	chr22	43459818:43459927:43460195:43460330:43464415:43464596,	43460196	43460330	43460216	43460216	Nonsense_Mutation	G	T	p.Y206X
THYM	TCGA-ZB-A96B-01	SLC17A3	ENST00000509714.1,ENST00000308453.5,ENST00000397060.4,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25851000:25851105:25855371:25855458:25861851:25861939,	25855372	25855458	25855394	25855394	Nonsense_Mutation	C	T	p.W230X
THYM	TCGA-XH-A853-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000514617.1,ENST00000507873.2,ENST00000502925.1	chr4	48550706:48550810:48551489:48551640:48552608:48552721,	48551490	48551640	48551613	48551613	Nonsense_Mutation	C	T	p.W1554X
THYM	TCGA-XH-A853-01	MPP3	ENST00000398393.1,ENST00000589375.1,ENST00000496503.1,ENST00000398389.4	chr17	41895413:41895478:41898229:41898426:41901298:41901373,	41898230	41898426	41898370	41898370	Nonsense_Mutation	G	T	p.C247X
THYM	TCGA-XH-A853-01	ZC3H14	ENST00000556000.1,ENST00000555755.1,ENST00000251038.5	chr14	89060778:89061455:89063077:89063152:89073586:89073707,89044336:89044484:89063077:89063152:89073586:89073707,89044336:89044484:89063077:89063152:89068267:89068353,	89063078	89063152	89063110	89063110	Nonsense_Mutation	C	T	p.Q438X
THYM	TCGA-XH-A853-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000561442.1,ENST00000559771.1	chr15	63824845:63824906:63829223:63829355:63845913:63845932,	63829224	63829355	63829294	63829294	Nonsense_Mutation	G	T	p.E75X
THYM	TCGA-X7-A8M5-01	WASF3	ENST00000335327.5	chr13	27246008:27246126:27250685:27250861:27255190:27255457,	27250686	27250861	27250836	27250836	Nonsense_Mutation	G	T	p.E231X
THYM	TCGA-X7-A8M5-01	CERS3	ENST00000284382.4,ENST00000558884.2,ENST00000538112.2	chr15	101031021:101031136:101041881:101042055:101061871:101061961,	101041882	101042055	101041935	101041935	Nonsense_Mutation	G	T	p.Y40X
THYM	TCGA-ZB-A963-01	TMC6	ENST00000322914.3,ENST00000593044.1,ENST00000588087.1,ENST00000392467.3,ENST00000590602.1	chr17	76116733:76116913:76117093:76117245:76117636:76117792,	76117094	76117245	76117159	76117159	Nonsense_Mutation	G	T	p.C490X
THYM	TCGA-ZB-A963-01	MAP3K7	ENST00000369329.3,ENST00000369325.3,ENST00000369332.3,ENST00000369327.3	chr6	91266218:91266343:91269794:91269933:91271340:91271386,	91269795	91269933	91269835	91269835	Nonsense_Mutation	G	A	p.Q148X
THYM	TCGA-ZB-A963-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	440984:441104:442652:442815:443406:443494,	442653	442815	442727	442727	Nonsense_Mutation	C	A	p.E527X
THYM	TCGA-ZB-A963-01	PPOX	ENST00000479246.1,ENST00000352210.5,ENST00000367999.4	chr1	161137160:161137276:161137784:161137917:161138782:161138973,161137160:161137276:161137784:161137917:161138221:161138335,	161137785	161137917	161137915	161137915	Nonsense_Mutation	G	T	p.E157X
THYM	TCGA-ZB-A963-01	LRRFIP2	ENST00000354379.4,ENST00000416425.1,ENST00000421276.2,ENST00000440230.1	chr3	37138106:37138151:37170553:37170640:37190384:37190529,	37170554	37170640	37170637	37170637	Nonsense_Mutation	C	A	p.E32X
THYM	TCGA-ZB-A963-01	VPS13A	ENST00000376636.3,ENST00000360280.3	chr9	79985941:79986065:79996891:79997003:80018151:80018237,	79996892	79997003	79996923	79996923	Nonsense_Mutation	C	T	p.R3037X
THYM	TCGA-ZB-A963-01	SENP6	ENST00000370014.3,ENST00000327284.8,ENST00000447266.2	chr6	76311939:76312292:76331247:76331341:76332466:76332574,76311939:76312292:76331247:76331341:76333615:76333676,	76331248	76331341	76331262	76331262	Nonsense_Mutation	G	T	p.E23X
THYM	TCGA-XM-A8RD-01	PAXBP1	ENST00000290178.4	chr21	34110483:34110630:34115558:34115625:34115988:34116065,34113729:34113933:34115558:34115625:34115988:34116065,	34115559	34115625	34115595	34115595	Nonsense_Mutation	G	T	p.Y766X
THYM	TCGA-XM-A8RD-01	SH3BP1	ENST00000357436.4,ENST00000469947.1,ENST00000451997.1,ENST00000466097.1,ENST00000599616.1	chr22	38043447:38043528:38044325:38044442:38046158:38046256,	38044326	38044442	38044408	38044408	Nonsense_Mutation	G	T	p.G428X
THYM	TCGA-XM-A8RD-01	GALNT8	ENST00000252318.2	chr12	4854594:4854792:4855309:4855424:4870123:4870309,	4855310	4855424	4855395	4855395	Nonsense_Mutation	G	T	p.G382X
THYM	TCGA-ZB-A96L-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121662412:121662521:121663595:121663789:121668552:121668642,	121663596	121663789	121663610	121663610	Nonsense_Mutation	G	T	p.E308X
THYM	TCGA-ZB-A96L-01	ARFGEF2	ENST00000371917.4	chr20	47585683:47585814:47587656:47587891:47588862:47588962,	47587657	47587891	47587664	47587664	Nonsense_Mutation	G	T	p.E400X
THYM	TCGA-ZB-A96L-01	DET1	ENST00000557842.1	chr15	89070829:89071017:89073853:89074704:89074843:89074946,	89073854	89074704	89073892	89073892	Nonsense_Mutation	C	A	p.E360X
THYM	TCGA-ZB-A96L-01	CHD7	ENST00000525508.1,ENST00000423902.2	chr8	61655590:61655656:61693558:61693989:61707544:61707686,	61693559	61693989	61693775	61693775	Nonsense_Mutation	G	T	p.E628X
THYM	TCGA-4V-A9QT-01	CTHRC1	ENST00000520337.1,ENST00000330295.5	chr8	104387965:104388187:104390254:104390471:104394685:104394842,	104390255	104390471	104390345	104390345	Nonsense_Mutation	C	T	p.Q155X
THYM	TCGA-4V-A9QT-01	DNAJC2	ENST00000249270.7,ENST00000379263.3	chr7	102962378:102962528:102962957:102963079:102963149:102963241,	102962958	102963079	102963020	102963020	Nonsense_Mutation	T	A	p.K291X
THYM	TCGA-4V-A9QT-01	MEIOB	ENST00000325962.3,ENST00000397344.3,ENST00000412554.2,ENST00000470044.1,ENST00000452149.2	chr16	1891820:1891974:1894862:1894964:1903039:1903135,	1894863	1894964	1894929	1894929	Nonsense_Mutation	G	A	p.R272X
THYM	TCGA-4V-A9QT-01	PAN3	ENST00000503791.1,ENST00000380958.3	chr13	28752001:28752072:28771321:28771483:28794367:28794515,	28771322	28771483	28771382	28771382	Nonsense_Mutation	C	T	p.R251X
THYM	TCGA-4V-A9QT-01	RMND5B	ENST00000513162.1,ENST00000515098.1,ENST00000507575.1,ENST00000313386.4,ENST00000542098.1,ENST00000515360.1	chr5	177570942:177571109:177573114:177573280:177574533:177574636,	177573115	177573280	177573215	177573215	Nonsense_Mutation	T	A	p.C265X
THYM	TCGA-4V-A9QT-01	MGRN1	ENST00000399577.5,ENST00000536343.1,ENST00000415496.1,ENST00000586183.1,ENST00000585676.1,ENST00000592256.1,ENST00000262370.7,ENST00000587747.1,ENST00000588994.1	chr16	4732823:4732947:4733224:4733270:4733843:4733873,	4733225	4733270	4733256	4733256	Nonsense_Mutation	C	A	p.S505X
THYM	TCGA-XU-A930-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000461115.1,ENST00000537103.1,ENST00000382778.4,ENST00000482172.1	chr13	21189931:21190018:21199888:21199988:21205154:21205241,	21199889	21199988	21199923	21199923	Nonsense_Mutation	G	T	p.E421X
THYM	TCGA-XU-A930-01	GRB10	ENST00000401949.1,ENST00000402578.1,ENST00000439599.1,ENST00000402497.1,ENST00000335866.3,ENST00000398810.2,ENST00000398812.2,ENST00000403097.1,ENST00000407526.1,ENST00000406641.1,ENST00000357271.5	chr7	50672986:50673103:50674033:50674111:50680437:50680536,	50674034	50674111	50674044	50674044	Nonsense_Mutation	G	T	p.S421X
THYM	TCGA-XU-A930-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117172	96117172	Nonsense_Mutation	G	T	p.S247X
THYM	TCGA-ZB-A96O-01	FSD1L	ENST00000480279.1	chr9	108230473:108230605:108234184:108234286:108246661:108246783,	108234185	108234286	108234224	108234224	Nonsense_Mutation	G	T	p.E127X
THYM	TCGA-X7-A8DF-01	SPATA20	ENST00000006658.6,ENST00000393244.3,ENST00000356488.4,ENST00000504334.1,ENST00000511937.1,ENST00000503127.1	chr17	48628871:48629040:48629329:48629541:48631611:48631811,	48629330	48629541	48629404	48629404	Nonsense_Mutation	C	A	p.S607X
THYM	TCGA-X7-A8DF-01	SPATA20	ENST00000503063.1	chr17	48628094:48628278:48628358:48629541:48631611:48631811,	48628359	48629541	48629404	48629404	Nonsense_Mutation	C	A	p.S607X
THYM	TCGA-X7-A8DF-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580624	7580624	Nonsense_Mutation	G	T	p.E1401X
THYM	TCGA-X7-A8DF-01	HAUS1	ENST00000588704.1,ENST00000282058.6,ENST00000593165.1,ENST00000591715.1,ENST00000592206.1	chr18	43685213:43685334:43702432:43702556:43703264:43703330,43685213:43685334:43702432:43702556:43704787:43704859,43699948:43700026:43702432:43702556:43703264:43703330,	43702433	43702556	43702524	43702524	Nonsense_Mutation	G	T	p.E190X
THYM	TCGA-X7-A8DF-01	ZSCAN2	ENST00000540894.1	chr15	85147131:85147564:85163832:85165945:85166506:85166867,	85163833	85165945	85163838	85163838	Nonsense_Mutation	G	T	p.E138X
THYM	TCGA-X7-A8DF-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87042932:87043033:87046627:87046831:87047852:87047936,	87046628	87046831	87046748	87046748	Nonsense_Mutation	C	T	p.W854X
THYM	TCGA-X7-A8DF-01	EAF1	ENST00000396842.2	chr3	15471422:15471514:15473593:15473730:15475854:15476045,	15473594	15473730	15473594	15473594	Nonsense_Mutation	G	T	p.G67X
THYM	TCGA-X7-A8DF-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000584446.1,ENST00000580732.2,ENST00000578368.1,ENST00000400483.4,ENST00000431264.1	chr18	18975345:18975522:18981110:18981287:18983832:18983955,	18981111	18981287	18981137	18981137	Nonsense_Mutation	G	T	p.G187X
THYM	TCGA-X7-A8DF-01	PGM2	ENST00000537241.1,ENST00000381967.4,ENST00000544359.1,ENST00000505986.1,ENST00000512556.1	chr4	37841687:37841881:37845984:37846174:37847253:37847351,	37845985	37846174	37846157	37846157	Nonsense_Mutation	G	T	p.E298X
THYM	TCGA-X7-A8DF-01	WTIP	ENST00000585928.1,ENST00000590071.2,ENST00000270288.6	chr19	34981280:34981382:34983941:34984009:34984167:34984230,	34983942	34984009	34983998	34983998	Nonsense_Mutation	G	T	p.E276X
THYM	TCGA-X7-A8DF-01	SLC39A7	ENST00000374675.3,ENST00000444757.1,ENST00000374677.3	chr6	33169848:33169902:33170039:33170204:33170336:33170469,	33170040	33170204	33170180	33170180	Nonsense_Mutation	G	T	p.G259X
THYM	TCGA-X7-A8DF-01	FOLH1	ENST00000340334.7,ENST00000356696.3,ENST00000533034.1,ENST00000256999.2	chr11	49204700:49204794:49207220:49207407:49208195:49208320,	49207221	49207407	49207221	49207221	Nonsense_Mutation	C	A	p.E276X
THYM	TCGA-X7-A8DF-01	IL31RA	ENST00000354961.4,ENST00000490985.1,ENST00000447346.2,ENST00000396834.1,ENST00000359040.5	chr5	55209304:55209398:55210674:55210756:55212471:55212662,	55210675	55210756	55210742	55210742	Nonsense_Mutation	G	T	p.G602X
THYM	TCGA-X7-A8DF-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123210172:123210404:123215733:123216151:123220727:123220800,	123215734	123216151	123215773	123215773	Nonsense_Mutation	C	T	p.W918X
THYM	TCGA-X7-A8DF-01	MTHFR	ENST00000376583.3,ENST00000376590.3,ENST00000376585.1,ENST00000376592.1	chr1	11854414:11854595:11854785:11854920:11855154:11855405,	11854786	11854920	11854877	11854877	Nonsense_Mutation	C	A	p.E359X
THYM	TCGA-X7-A8DF-01	EFTUD2	ENST00000589825.1,ENST00000592576.1	chr17	42964030:42964118:42971784:42971893:42976736:42976771,	42971785	42971893	42971805	42971805	Nonsense_Mutation	C	A	p.E29X
THYM	TCGA-X7-A8DF-01	EFTUD2	ENST00000592408.1	chr17	42964030:42964118:42971612:42971893:42976736:42976771,	42971613	42971893	42971805	42971805	Nonsense_Mutation	C	A	p.E29X
THYM	TCGA-X7-A8DF-01	PBXIP1	ENST00000368463.3,ENST00000368460.3,ENST00000490230.1	chr1	154923946:154924011:154924270:154924397:154926146:154926233,	154924271	154924397	154924334	154924334	Nonsense_Mutation	G	A	p.Q39X
THYM	TCGA-X7-A8DF-01	PBXIP1	ENST00000493133.1	chr1	154923707:154923873:154923946:154924397:154926146:154926233,	154923947	154924397	154924334	154924334	Nonsense_Mutation	G	A	p.Q39X
THYM	TCGA-4X-A9FB-01	GNB1	ENST00000434686.2,ENST00000378609.4,ENST00000471354.1,ENST00000439272.2	chr1	1724683:1724750:1735857:1736020:1737913:1737977,	1735858	1736020	1735946	1735946	Nonsense_Mutation	G	T	p.C114X
THYM	TCGA-4X-A9FB-01	TIAL1	ENST00000369093.2	chr10	121341680:121341735:121341970:121342120:121347663:121347722,	121341971	121342120	121342074	121342074	Nonsense_Mutation	A	T	p.L59X
THYM	TCGA-4X-A9FB-01	CALCOCO2	ENST00000509415.1	chr17	46925425:46925444:46925683:46925817:46926613:46926631,	46925684	46925817	46925716	46925716	Nonsense_Mutation	C	T	p.Q130X
THYM	TCGA-4X-A9FB-01	SETD5	ENST00000413704.1,ENST00000443339.1,ENST00000493918.1,ENST00000402198.1,ENST00000302463.6,ENST00000399686.2,ENST00000497213.1,ENST00000407969.1,ENST00000402466.1,ENST00000406341.1	chr3	9483853:9483929:9484991:9485101:9486731:9486984,	9484992	9485101	9484995	9484995	Nonsense_Mutation	C	T	p.R361X
THYM	TCGA-3G-AB0O-01	ARHGAP22	ENST00000417912.2,ENST00000374172.1	chr10	49667726:49667934:49687630:49687807:49763507:49763595,	49687631	49687807	49687663	49687663	Nonsense_Mutation	G	T	p.S156X
THYM	TCGA-3G-AB0O-01	TRABD	ENST00000395829.1,ENST00000395827.1,ENST00000463233.1,ENST00000380909.4,ENST00000303434.4	chr22	50633328:50633469:50635669:50635780:50635877:50636017,	50635670	50635780	50635730	50635730	Nonsense_Mutation	G	T	p.E161X
THYM	TCGA-4V-A9QJ-01	GCC2	ENST00000393321.2	chr2	109102286:109102364:109102890:109103104:109104154:109104276,	109102891	109103104	109103081	109103081	Nonsense_Mutation	C	T	p.Q1303X
THYM	TCGA-4V-A9QJ-01	GCC2	ENST00000482325.1,ENST00000309863.6	chr2	109102286:109102364:109102966:109103104:109104154:109104276,	109102967	109103104	109103081	109103081	Nonsense_Mutation	C	T	p.Q1303X
THYM	TCGA-4V-A9QJ-01	GRPEL2	ENST00000507562.1,ENST00000329271.3	chr5	148727834:148727988:148729216:148729298:148730480:148730914,	148729217	148729298	148729298	148729298	Nonsense_Mutation	G	T	p.G105X
THYM	TCGA-4V-A9QJ-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82837601	82837601	Nonsense_Mutation	G	T	p.E2927X
THYM	TCGA-4V-A9QJ-01	TTC3	ENST00000450533.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000399010.1,ENST00000355666.1,ENST00000484047.1,ENST00000399017.2	chr21	38461098:38461186:38462532:38462586:38463592:38463713,	38462533	38462586	38462551	38462551	Nonsense_Mutation	G	T	p.G149X
THYM	TCGA-4V-A9QJ-01	TUFT1	ENST00000353024.3,ENST00000538902.1,ENST00000392712.3,ENST00000368848.2,ENST00000368849.3	chr1	151546745:151546874:151547386:151547481:151551196:151551302,	151547387	151547481	151547423	151547423	Nonsense_Mutation	G	T	p.E254X
THYM	TCGA-4V-A9QJ-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100974621:100974671:100974914:100974995:100975112:100975206,	100974915	100974995	100974959	100974959	Nonsense_Mutation	G	T	p.S1249X
THYM	TCGA-4V-A9QJ-01	ITPR1	ENST00000493491.1,ENST00000478515.1,ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000463980.1,ENST00000302640.8,ENST00000544951.1,ENST00000354582.6	chr3	4856736:4856902:4859765:4859926:4878457:4878619,	4859766	4859926	4859885	4859885	Nonsense_Mutation	G	T	p.E2648X
THYM	TCGA-4V-A9QQ-01	FRS2	ENST00000299293.2,ENST00000549921.1,ENST00000397997.2,ENST00000550389.1,ENST00000551325.1,ENST00000550937.1	chr12	69962784:69962876:69964110:69964297:69965055:69965075,	69964111	69964297	69964267	69964267	Nonsense_Mutation	G	T	p.E75X
THYM	TCGA-4V-A9QQ-01	HLA-DPB1	ENST00000428835.1,ENST00000418931.2,ENST00000416804.1	chr6	33048465:33048712:33052726:33053008:33053555:33053666,	33052727	33053008	33052771	33052771	Nonsense_Mutation	C	T	p.Q137X
THYM	TCGA-4V-A9QQ-01	ITGAD	ENST00000389202.2	chr16	31435422:31435524:31435787:31435898:31437335:31437826,	31435788	31435898	31435812	31435812	Nonsense_Mutation	G	T	p.E1096X
THYM	TCGA-4V-A9QQ-01	TGM1	ENST00000206765.6	chr14	24728909:24729017:24729145:24729264:24729655:24729904,	24729146	24729264	24729184	24729184	Nonsense_Mutation	C	A	p.E280X
THYM	TCGA-4V-A9QQ-01	GBF1	ENST00000369983.3	chr10	104119940:104120152:104120778:104120877:104121474:104121669,	104120779	104120877	104120794	104120794	Nonsense_Mutation	C	T	p.R470X
THYM	TCGA-4V-A9QQ-01	PACRGL	ENST00000444671.2,ENST00000538990.1	chr4	20706282:20706437:20715054:20715162:20728907:20729020,	20715055	20715162	20715079	20715079	Nonsense_Mutation	G	T	p.E176X
THYM	TCGA-4V-A9QQ-01	HECTD1	ENST00000555843.1,ENST00000553957.1,ENST00000553700.1,ENST00000399332.1,ENST00000554882.1	chr14	31583082:31583265:31583491:31583546:31585441:31585664,	31583492	31583546	31583537	31583537	Nonsense_Mutation	G	T	p.Y1876X
THYM	TCGA-ZB-A964-01	MAP2K2	ENST00000599345.1,ENST00000394867.4	chr19	4110506:4110653:4117416:4117627:4123780:4123812,	4117417	4117627	4117587	4117587	Nonsense_Mutation	C	A	p.E45X
THYM	TCGA-ZB-A964-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20107846	20107846	Nonsense_Mutation	G	T	p.E162X
THYM	TCGA-ZB-A964-01	NEB	ENST00000603639.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000413693.1,ENST00000397337.2,ENST00000409198.1,ENST00000172853.10	chr2	152362679:152362772:152363422:152363527:152364518:152364556,	152363423	152363527	152363424	152363424	Nonsense_Mutation	G	T	p.S7887X
THYM	TCGA-ZB-A964-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000446180.1,ENST00000388738.3	chr4	123164152:123164223:123165008:123165182:123166174:123166295,	123165009	123165182	123165058	123165058	Nonsense_Mutation	G	T	p.E1598X
THYM	TCGA-ZB-A964-01	CCDC157	ENST00000338306.3,ENST00000405659.1	chr22	30765420:30765592:30766314:30766939:30767638:30767716,	30766315	30766939	30766450	30766450	Nonsense_Mutation	G	T	p.E186X
THYM	TCGA-ZB-A964-01	AQR	ENST00000156471.5	chr15	35162952:35163123:35166028:35166200:35166877:35167065,	35166029	35166200	35166185	35166185	Nonsense_Mutation	G	T	p.Y1147X
THYM	TCGA-ZB-A964-01	ZNF516	ENST00000529449.2	chr18	74074225:74074512:74083421:74083526:74090809:74090868,	74083422	74083526	74083424	74083424	Nonsense_Mutation	G	T	p.S1121X
THYM	TCGA-ZB-A964-01	ZNF563	ENST00000594577.1	chr19	12430355:12430647:12432085:12432146:12433398:12433525,12429992:12430479:12432085:12432146:12433398:12433525,	12432086	12432146	12432120	12432120	Nonsense_Mutation	C	A	p.E53X
THYM	TCGA-XU-A92Z-01	RPS6KA1	ENST00000374163.1,ENST00000530003.1,ENST00000526792.1,ENST00000531382.1,ENST00000374168.2,ENST00000374166.4,ENST00000374162.2	chr1	26898339:26898416:26898666:26898784:26899714:26899852,	26898667	26898784	26898704	26898704	Nonsense_Mutation	G	T	p.E632X
THYM	TCGA-XU-A92Z-01	WRN	ENST00000298139.5	chr8	30925773:30925843:30933688:30933803:30938382:30938812,	30933689	30933803	30933691	30933691	Nonsense_Mutation	G	T	p.E243X
THYM	TCGA-XU-A92Z-01	LUM	ENST00000546642.1	chr12	91497936:91498096:91501894:91502464:91505174:91505216,	91501895	91502464	91502240	91502240	Nonsense_Mutation	C	A	p.E173X
THYM	TCGA-XU-A92Z-01	DHTKD1	ENST00000437298.1	chr10	12129533:12129728:12130984:12131254:12133511:12133642,12126538:12126750:12130984:12131254:12133511:12133642,	12130985	12131254	12131042	12131042	Nonsense_Mutation	G	T	p.G259X
THYM	TCGA-5U-AB0E-01	RNF213	ENST00000508628.2,ENST00000582970.1	chr17	78311632:78311797:78313000:78314156:78316931:78317125,	78313001	78314156	78313781	78313781	Nonsense_Mutation	G	T	p.E1872X
THYM	TCGA-5V-A9RR-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228537590:228537758:228538541:228538644:228539021:228539151,	228538542	228538644	228538592	228538592	Nonsense_Mutation	G	T	p.E7080X
THYM	TCGA-5V-A9RR-01	GLIS3	ENST00000491889.1	chr9	4125733:4125941:4286037:4286523:4299420:4299594,4125819:4125941:4286037:4286523:4298383:4298496,4118744:4118881:4286037:4286523:4299420:4299594,	4286038	4286523	4286077	4286077	Nonsense_Mutation	G	A	p.Q117X
THYM	TCGA-5V-A9RR-01	GOT2	ENST00000564400.1,ENST00000434819.2,ENST00000245206.5	chr16	58752099:58752204:58752430:58752592:58753099:58753159,	58752431	58752592	58752467	58752467	Nonsense_Mutation	G	T	p.C187X
THYM	TCGA-5V-A9RR-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25777898:25777982:25780697:25780825:25783863:25784040,	25780698	25780825	25780763	25780763	Nonsense_Mutation	C	T	p.W840X
THYM	TCGA-5V-A9RR-01	AGO4	ENST00000373210.3	chr1	36292348:36292436:36297027:36297175:36297412:36297532,	36297028	36297175	36297082	36297082	Nonsense_Mutation	T	A	p.Y301X
THYM	TCGA-ZB-A96C-01	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24197299:24197887:24225442:24225592:24225828:24225972,	24225443	24225592	24225499	24225499	Nonsense_Mutation	G	T	p.E235X
THYM	TCGA-ZB-A96C-01	MMRN2	ENST00000608090.1	chr10	88705126:88705233:88705317:88705568:88717134:88717328,	88705318	88705568	88705437	88705437	Nonsense_Mutation	G	T	p.C58X
THYM	TCGA-ZB-A96C-01	MMRN2	ENST00000474994.2	chr10	88705126:88705233:88705317:88705446:88728798:88728878,	88705318	88705446	88705437	88705437	Nonsense_Mutation	G	T	p.C58X
THYM	TCGA-ZB-A96C-01	PPP1R16B	ENST00000299824.1	chr20	37531310:37531435:37534611:37534737:37535621:37535697,	37534612	37534737	37534705	37534705	Nonsense_Mutation	G	T	p.E264X
THYM	TCGA-ZB-A96C-01	ASPSCR1	ENST00000582355.2,ENST00000583744.1,ENST00000577733.1,ENST00000306729.7,ENST00000581608.1,ENST00000584454.1,ENST00000583142.1,ENST00000585140.1,ENST00000580534.1,ENST00000578361.1,ENST00000306739.4,ENST00000582404.1	chr17	79974351:79974403:79974675:79974745:79974816:79974913,	79974676	79974745	79974702	79974702	Nonsense_Mutation	G	T	p.E572X
THYM	TCGA-ZB-A96C-01	AFAP1	ENST00000358461.2,ENST00000420658.1	chr4	7870348:7870446:7873678:7873807:7941382:7941653,	7873679	7873807	7873741	7873741	Nonsense_Mutation	G	T	p.S22X
THYM	TCGA-ZC-AAAA-01	PAAF1	ENST00000535604.1,ENST00000544909.1,ENST00000544552.1,ENST00000536003.1,ENST00000376384.5,ENST00000310571.3,ENST00000541951.1	chr11	73627589:73627705:73629994:73630077:73635659:73635742,	73629995	73630077	73630023	73630023	Nonsense_Mutation	G	T	p.G322X
THYM	TCGA-ZC-AAAA-01	SWAP70	ENST00000447399.2,ENST00000318950.6	chr11	9769404:9769603:9770633:9770730:9771410:9773368,	9770634	9770730	9770652	9770652	Nonsense_Mutation	G	T	p.E525X
THYM	TCGA-ZC-AAAA-01	USE1	ENST00000445667.2,ENST00000600970.1,ENST00000593597.1,ENST00000263897.5,ENST00000594724.1	chr19	17329180:17329200:17330021:17330196:17330439:17330449,	17330022	17330196	17330086	17330086	Nonsense_Mutation	C	T	p.Q163X
THYM	TCGA-ZC-AAAA-01	PIGK	ENST00000370812.3,ENST00000359130.1	chr1	77632403:77632515:77634944:77635080:77672324:77672416,	77634945	77635080	77634995	77634995	Nonsense_Mutation	C	A	p.E109X
THYM	TCGA-YT-A95H-01	ARMC8	ENST00000393058.3,ENST00000461822.1,ENST00000469044.1,ENST00000481646.1,ENST00000491704.1,ENST00000460495.1,ENST00000485396.1,ENST00000466762.1,ENST00000538260.1	chr3	137982972:137983054:137985996:137986083:137988881:137988974,	137985997	137986083	137986063	137986063	Nonsense_Mutation	G	T	p.E442X
THYM	TCGA-YT-A95H-01	NPTN	ENST00000351217.6,ENST00000562924.1	chr15	73879864:73879959:73884306:73884478:73925465:73925562,	73884307	73884478	73884458	73884458	Nonsense_Mutation	C	A	p.E154X
THYM	TCGA-YT-A95H-01	SPATS2L	ENST00000409140.3,ENST00000358677.5,ENST00000409385.1,ENST00000409988.3,ENST00000451764.2,ENST00000409718.1,ENST00000409755.3,ENST00000409151.1	chr2	201283972:201284219:201303844:201304051:201305371:201305447,	201303845	201304051	201303943	201303943	Nonsense_Mutation	G	T	p.E182X
THYM	TCGA-ZB-A96M-01	HORMAD1	ENST00000442853.1,ENST00000322343.7,ENST00000368987.1,ENST00000361824.2,ENST00000368993.2	chr1	150680731:150680883:150681369:150681437:150684020:150684047,	150681370	150681437	150681430	150681430	Nonsense_Mutation	G	T	p.S112X
THYM	TCGA-ZB-A96M-01	TRA2A	ENST00000474586.1,ENST00000538367.1,ENST00000494255.1,ENST00000297071.4,ENST00000392502.4	chr7	23547039:23547154:23552512:23552701:23555981:23556081,	23552513	23552701	23552566	23552566	Nonsense_Mutation	G	A	p.R158X
THYM	TCGA-ZB-A96M-01	CRTC2	ENST00000368630.3,ENST00000368633.1,ENST00000303569.6	chr1	153920933:153921120:153921590:153921860:153923735:153924080,	153921591	153921860	153921713	153921713	Nonsense_Mutation	G	A	p.Q518X
THYM	TCGA-ZB-A96M-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38538738	38538738	Nonsense_Mutation	G	T	p.E1408X
THYM	TCGA-ZC-AAAH-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561313	32561313	Nonsense_Mutation	C	T	p.R480X
THYM	TCGA-X7-A8DD-01	ACAD9	ENST00000508971.1,ENST00000511325.1,ENST00000308982.7,ENST00000511526.1,ENST00000505867.1,ENST00000511227.1	chr3	128628863:128628992:128629583:128629656:128631349:128631548,	128629584	128629656	128629611	128629611	Nonsense_Mutation	G	T	p.E574X
THYM	TCGA-X7-A8DD-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306144	27306144	Nonsense_Mutation	C	T	p.Q569X
THYM	TCGA-X7-A8DD-01	SDR39U1	ENST00000554698.1	chr14	24910059:24910132:24911303:24911466:24911551:24911581,	24911304	24911466	24911450	24911450	Nonsense_Mutation	G	T	p.S47X
THYM	TCGA-X7-A8DD-01	SDR39U1	ENST00000556523.1	chr14	24910059:24910132:24911314:24911466:24911551:24911581,24910976:24911001:24911314:24911466:24911551:24911581,	24911315	24911466	24911450	24911450	Nonsense_Mutation	G	T	p.S47X
THYM	TCGA-X7-A8DD-01	SDR39U1	ENST00000399395.3,ENST00000555225.1,ENST00000553930.1	chr14	24910059:24910132:24911383:24911466:24911551:24911581,24910976:24911001:24911383:24911466:24911551:24911581,	24911384	24911466	24911450	24911450	Nonsense_Mutation	G	T	p.S47X
THYM	TCGA-X7-A8DD-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17629626:17629770:17632880:17633075:17637383:17638001,	17632881	17633075	17632953	17632953	Nonsense_Mutation	G	A	p.Q863X
THYM	TCGA-X7-A8DD-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000562408.1	chr16	28124224:28124371:28132990:28133083:28137009:28137169,28128638:28128783:28132990:28133083:28137009:28137169,	28132991	28133083	28133018	28133018	Nonsense_Mutation	G	T	p.S611X
THYM	TCGA-X7-A8DD-01	CREBBP	ENST00000262367.5	chr16	3832684:3832927:3841981:3842095:3843386:3843627,	3841982	3842095	3841994	3841994	Nonsense_Mutation	G	A	p.R440X
THYM	TCGA-5U-AB0F-01	AHCYL2	ENST00000325006.3,ENST00000531335.2,ENST00000446544.2,ENST00000490911.1,ENST00000474594.1,ENST00000466924.1,ENST00000466993.1,ENST00000446212.1,ENST00000491079.1	chr7	129029474:129029575:129037062:129037165:129040130:129040161,	129037063	129037165	129037102	129037102	Nonsense_Mutation	C	T	p.R254X
THYM	TCGA-3G-AB14-01	GNL3	ENST00000484022.1,ENST00000394799.2,ENST00000418458.1	chr3	52723089:52723222:52724607:52724720:52724960:52725087,	52724608	52724720	52724652	52724652	Nonsense_Mutation	A	T	p.K196X
THYM	TCGA-3G-AB14-01	GNL3	ENST00000496254.1	chr3	52723089:52723222:52724607:52725087:52725557:52725645,	52724608	52725087	52724652	52724652	Nonsense_Mutation	A	T	p.K196X
THYM	TCGA-ZC-AAAF-01	MIEN1	ENST00000469568.1,ENST00000394231.3	chr17	37885408:37885858:37885937:37886014:37886446:37886544,	37885938	37886014	37886006	37886006	Nonsense_Mutation	C	A	p.E66X
THYM	TCGA-ZC-AAAF-01	RECK	ENST00000377966.3	chr9	36091160:36091340:36100327:36100540:36102090:36102227,	36100328	36100540	36100398	36100398	Nonsense_Mutation	G	T	p.E386X
THYM	TCGA-ZC-AAAF-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387503	70387503	Nonsense_Mutation	C	A	p.S519X
THYM	TCGA-X7-A8D8-01	VPS13B	ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100513914:100514086:100515063:100515178:100519364:100519431,	100515064	100515178	100515147	100515147	Nonsense_Mutation	G	T	p.E1376X
THYM	TCGA-X7-A8D8-01	ADD3	ENST00000475954.1	chr10	111860382:111860606:111872534:111872673:111877099:111877117,	111872535	111872673	111872616	111872616	Nonsense_Mutation	C	T	p.Q93X
THYM	TCGA-X7-A8D8-01	IL17RC	ENST00000483582.1,ENST00000413608.1,ENST00000434756.1,ENST00000438091.1,ENST00000451271.1,ENST00000383812.4,ENST00000416074.2,ENST00000436503.1,ENST00000403601.3,ENST00000455057.1,ENST00000295981.3,ENST00000451231.1	chr3	9965564:9965704:9965915:9965975:9969849:9969904,	9965916	9965975	9965973	9965973	Nonsense_Mutation	C	T	p.Q345X
THYM	TCGA-XU-AAXX-01	HSPG2	ENST00000486901.1,ENST00000374695.3	chr1	22150108:22150212:22150613:22150697:22150798:22150866,	22150614	22150697	22150694	22150694	Nonsense_Mutation	G	T	p.Y4273X
THYM	TCGA-XU-AAXX-01	USP25	ENST00000400183.2,ENST00000285679.6,ENST00000285681.2	chr21	17197328:17197380:17198522:17198684:17199295:17199522,	17198523	17198684	17198587	17198587	Nonsense_Mutation	G	T	p.E457X
THYM	TCGA-XU-AAXX-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55342065:55342254:55351267:55351424:55352303:55352347,	55351268	55351424	55351345	55351345	Nonsense_Mutation	G	T	p.S518X
THYM	TCGA-XU-AAXX-01	SLC4A1AP	ENST00000326019.6	chr2	27900604:27900791:27905114:27905226:27907903:27908144,	27905115	27905226	27905140	27905140	Nonsense_Mutation	G	T	p.E597X
THYM	TCGA-ZB-A966-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30492633	30492633	Nonsense_Mutation	G	A	p.R134X
THYM	TCGA-ZB-A966-01	SECISBP2	ENST00000534113.2,ENST00000375807.3	chr9	91934566:91934712:91940341:91940591:91940811:91940953,	91940342	91940591	91940373	91940373	Nonsense_Mutation	G	T	p.G72X
THYM	TCGA-ZB-A966-01	UTP23	ENST00000357148.3	chr8	117778810:117779030:117782430:117782605:117791721:117791825,117778810:117779030:117782430:117782605:117798741:117798816,	117782431	117782605	117782507	117782507	Nonsense_Mutation	C	T	p.R89X
THYM	TCGA-ZB-A966-01	FMN1	ENST00000559047.1	chr15	33300214:33300276:33357157:33357275:33380999:33381175,	33357158	33357275	33357216	33357216	Nonsense_Mutation	C	T	p.W478X
THYM	TCGA-ZB-A966-01	DNAJC7	ENST00000588641.1	chr17	40142371:40142400:40146887:40146962:40148328:40148442,40142371:40142400:40146887:40146962:40149132:40149257,	40146888	40146962	40146920	40146920	Nonsense_Mutation	C	A	p.E150X
THYM	TCGA-ZB-A966-01	DNAJC7	ENST00000588814.1	chr17	40142371:40142400:40146887:40147001:40148328:40148442,	40146888	40147001	40146920	40146920	Nonsense_Mutation	C	A	p.E150X
THYM	TCGA-ZB-A966-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34923104	34923104	Nonsense_Mutation	G	T	p.E523X
THYM	TCGA-ZB-A966-01	GIGYF2	ENST00000452341.2,ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233681580:233681742:233684536:233684695:233697566:233697803,	233684537	233684695	233684582	233684582	Nonsense_Mutation	C	T	p.R827X
THYM	TCGA-ZB-A966-01	DNAH5	ENST00000265104.4	chr5	13735239:13735430:13735926:13736041:13737360:13737604,	13735927	13736041	13735969	13735969	Nonsense_Mutation	G	T	p.S3843X
THYM	TCGA-ZB-A966-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143092794	143092794	Nonsense_Mutation	G	A	p.R1028X
THYM	TCGA-ZB-A966-01	PLA2G6	ENST00000335539.3,ENST00000402064.1,ENST00000332509.3,ENST00000498338.1	chr22	38530994:38531091:38535988:38536176:38539111:38539295,	38535989	38536176	38536024	38536024	Nonsense_Mutation	G	T	p.Y254X
THYM	TCGA-ZB-A96R-01	IMMT	ENST00000409051.2	chr2	86393630:86393767:86397871:86397964:86398330:86398411,86393630:86393767:86397871:86397964:86400772:86400884,	86397872	86397964	86397938	86397938	Nonsense_Mutation	G	A	p.R197X
THYM	TCGA-ZB-A96R-01	IMMT	ENST00000410111.3,ENST00000409258.2,ENST00000474969.1,ENST00000449247.2	chr2	86393630:86393767:86397871:86397967:86398330:86398411,	86397872	86397967	86397938	86397938	Nonsense_Mutation	G	A	p.R197X
THYM	TCGA-ZB-A96R-01	RPF2	ENST00000368864.4,ENST00000425871.1,ENST00000441448.2,ENST00000607388.1	chr6	111318385:111318467:111320913:111320990:111329240:111329340,	111320914	111320990	111320949	111320949	Nonsense_Mutation	G	T	p.E118X
THYM	TCGA-ZB-A96R-01	CPEB2	ENST00000507071.1,ENST00000382401.3,ENST00000345451.3,ENST00000541112.1	chr4	15018811:15018902:15034784:15034835:15054037:15054208,	15034785	15034835	15034808	15034808	Nonsense_Mutation	G	T	p.G717X
THYM	TCGA-X7-A8DG-01	PEMT	ENST00000255389.5,ENST00000484838.2,ENST00000490392.1,ENST00000395782.1,ENST00000395783.1	chr17	17409540:17409615:17412747:17412859:17415822:17415968,	17412748	17412859	17412756	17412756	Nonsense_Mutation	C	T	p.W190X
THYM	TCGA-X7-A8DG-01	HDAC10	ENST00000216271.5,ENST00000496909.1,ENST00000415993.1	chr22	50687090:50687180:50687259:50687319:50687531:50687597,	50687260	50687319	50687294	50687294	Nonsense_Mutation	G	T	p.S261X
THYM	TCGA-X7-A8DG-01	RAD50	ENST00000265335.6,ENST00000423956.1,ENST00000453394.1,ENST00000378823.3,ENST00000533482.1	chr5	131915008:131915194:131915553:131915758:131923253:131923382,	131915554	131915758	131915654	131915654	Nonsense_Mutation	G	T	p.E218X
THYM	TCGA-X7-A8DG-01	TRANK1	ENST00000429976.2,ENST00000301807.6,ENST00000513141.1	chr3	36902505:36902651:36905809:36905971:36915616:36915724,	36905810	36905971	36905813	36905813	Nonsense_Mutation	G	A	p.Q369X
THYM	TCGA-XU-A936-01	TSPAN18	ENST00000340160.3,ENST00000518429.2,ENST00000533786.1,ENST00000520999.2,ENST00000520358.2	chr11	44927957:44928030:44931255:44931450:44939522:44939597,	44931256	44931450	44931319	44931319	Nonsense_Mutation	G	T	p.E43X
THYM	TCGA-XU-A936-01	ALOX12	ENST00000251535.6	chr17	6909180:6909346:6909804:6909926:6913065:6913166,	6909805	6909926	6909880	6909880	Nonsense_Mutation	G	A	p.W498X
THYM	TCGA-XU-A936-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50041999:50042096:50050611:50051175:50054354:50054471,	50050612	50051175	50050985	50050985	Nonsense_Mutation	G	T	p.E239X
THYM	TCGA-XU-A936-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117205	72117205	Nonsense_Mutation	C	T	p.R658X
THYM	TCGA-XU-A936-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117205	72117205	Nonsense_Mutation	C	T	p.R658X
THYM	TCGA-XU-A936-01	INSIG1	ENST00000476756.1,ENST00000344756.4	chr7	155094515:155094556:155095534:155095605:155099950:155100467,	155095535	155095605	155095553	155095553	Nonsense_Mutation	G	T	p.E123X
THYM	TCGA-XU-A936-01	ADK	ENST00000541550.1,ENST00000286621.2,ENST00000372734.3,ENST00000539909.1	chr10	76360136:76360251:76429940:76430027:76468078:76468233,	76429941	76430027	76430009	76430009	Nonsense_Mutation	G	T	p.G316X
THYM	TCGA-3S-AAYX-01	RYR1	ENST00000596431.1,ENST00000594335.1	chr19	39025955:39026032:39026636:39026710:39028519:39028600,	39026637	39026710	39026677	39026677	Nonsense_Mutation	G	T	p.E3853X
THYM	TCGA-3S-AAYX-01	PRDM1	ENST00000369091.2,ENST00000369096.4,ENST00000369089.3	chr6	106552699:106553808:106554245:106554374:106554785:106555383,	106554246	106554374	106554366	106554366	Nonsense_Mutation	G	T	p.E632X
THYM	TCGA-YT-A95G-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99969432	99969432	Nonsense_Mutation	G	T	p.E521X
THYM	TCGA-YT-A95G-01	TRIM31	ENST00000376734.3,ENST00000540829.1	chr6	30078224:30078455:30079424:30079520:30080165:30080252,	30079425	30079520	30079490	30079490	Nonsense_Mutation	G	A	p.Q150X
THYM	TCGA-YT-A95G-01	EPG5	ENST00000587974.1,ENST00000282041.5	chr18	43496402:43496547:43497643:43497784:43502306:43502566,	43497644	43497784	43497645	43497645	Nonsense_Mutation	G	A	p.Q1080X
THYM	TCGA-YT-A95G-01	NCAPD2	ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6638110:6638205:6638678:6638759:6638940:6639124,	6638679	6638759	6638716	6638716	Nonsense_Mutation	G	T	p.E1204X
THYM	TCGA-YT-A95G-01	APOBEC3D	ENST00000381568.4,ENST00000216099.8	chr22	39421561:39421676:39425367:39425524:39427698:39427978,	39425368	39425524	39425378	39425378	Nonsense_Mutation	G	T	p.E206X
THYM	TCGA-YT-A95G-01	UTRN	ENST00000367545.3	chr6	144872100:144872218:144875823:144876029:144878292:144878447,	144875824	144876029	144875943	144875943	Nonsense_Mutation	G	T	p.E2350X
THYM	TCGA-YT-A95G-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823379	155823379	Nonsense_Mutation	G	A	p.Q65X
THYM	TCGA-YT-A95G-01	TNK1	ENST00000311668.2,ENST00000570896.1,ENST00000576812.1	chr17	7290702:7290776:7291724:7292023:7292106:7292202,	7291725	7292023	7291895	7291895	Nonsense_Mutation	G	T	p.E555X
THYM	TCGA-YT-A95G-01	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52339205:52339318:52359563:52359722:52361561:52361678,	52359564	52359722	52359585	52359585	Nonsense_Mutation	G	A	p.Q502X
THYM	TCGA-XM-A8RB-01	CREB1	ENST00000445803.1	chr2	208394827:208394858:208420351:208420473:208424949:208425072,208394646:208394742:208420351:208420473:208424949:208425072,	208420352	208420473	208420381	208420381	Nonsense_Mutation	G	T	p.E8X
THYM	TCGA-XM-A8RB-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112465995:112466135:112469358:112469538:112471712:112471829,	112469359	112469538	112469426	112469426	Nonsense_Mutation	C	T	p.W762X
THYM	TCGA-XM-A8RB-01	INTS10	ENST00000522114.1,ENST00000397977.3	chr8	19675785:19675853:19677083:19677187:19677889:19678029,	19677084	19677187	19677160	19677160	Nonsense_Mutation	C	T	p.Q92X
THYM	TCGA-XU-A92V-01	ATG16L1	ENST00000392020.4,ENST00000431917.1,ENST00000474148.1,ENST00000479942.1,ENST00000392021.3,ENST00000392018.1,ENST00000392017.4	chr2	234171775:234171881:234172637:234172711:234173537:234173566,	234172638	234172711	234172689	234172689	Nonsense_Mutation	G	T	p.E123X
THYM	TCGA-XU-A92V-01	CDS1	ENST00000295887.5	chr4	85540546:85540686:85552971:85553030:85555009:85555092,	85552972	85553030	85553012	85553012	Nonsense_Mutation	T	A	p.Y207X
THYM	TCGA-XU-A92V-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67938401	67938401	Nonsense_Mutation	G	T	p.G549X
THYM	TCGA-XU-AAXW-01	MAGI1	ENST00000483466.1,ENST00000402939.2,ENST00000497477.2,ENST00000460329.2,ENST00000472257.1,ENST00000463103.2,ENST00000330909.8,ENST00000479287.1	chr3	65438932:65439015:65455957:65456159:65464266:65464309,	65455958	65456159	65456031	65456031	Nonsense_Mutation	C	A	p.E296X
THYM	TCGA-XU-AAXW-01	MAGI1	ENST00000470990.1,ENST00000464060.1	chr3	65438932:65439015:65455957:65456162:65464266:65464309,	65455958	65456162	65456031	65456031	Nonsense_Mutation	C	A	p.E296X
THYM	TCGA-XU-AAXW-01	GRK5	ENST00000369108.3,ENST00000392870.2	chr10	121190898:121191039:121196162:121196353:121199242:121199280,	121196163	121196353	121196184	121196184	Nonsense_Mutation	G	T	p.E254X
THYM	TCGA-XU-AAXW-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91659208:91659305:91660825:91660918:91667732:91668086,	91660826	91660918	91660853	91660853	Nonsense_Mutation	G	T	p.E1425X
THYM	TCGA-XU-AAXW-01	SNX29	ENST00000564111.1,ENST00000566228.1	chr16	12121176:12121301:12136753:12136934:12140240:12140311,	12136754	12136934	12136798	12136798	Nonsense_Mutation	G	T	p.E98X
THYM	TCGA-ZB-A96E-01	DNAJC16	ENST00000375838.1,ENST00000375847.3,ENST00000375849.1,ENST00000475133.1	chr1	15886102:15886151:15888636:15888820:15890423:15890606,	15888637	15888820	15888722	15888722	Nonsense_Mutation	C	T	p.Q414X
THYM	TCGA-ZB-A96E-01	PNPO	ENST00000544840.1	chr17	46022924:46022978:46023226:46023355:46023688:46023743,46021981:46022081:46023226:46023355:46023688:46023743,	46023227	46023355	46023263	46023263	Nonsense_Mutation	G	T	p.E152X
THYM	TCGA-ZB-A96E-01	PLEKHG4B	ENST00000283426.6	chr5	173011:173182:174032:174213:181628:181790,	174033	174213	174164	174164	Nonsense_Mutation	G	A	p.W1095X
THYM	TCGA-ZB-A96E-01	ENPP3	ENST00000414305.1,ENST00000543135.1,ENST00000357639.3,ENST00000358229.5,ENST00000494023.1	chr6	131992387:131992467:131995301:131995421:131996219:131996329,	131995302	131995421	131995314	131995314	Nonsense_Mutation	G	T	p.E219X
THYM	TCGA-ZB-A96E-01	ENPP3	ENST00000427707.1,ENST00000427148.2	chr6	131992387:131992467:131995301:131995550:131996219:131996329,	131995302	131995550	131995314	131995314	Nonsense_Mutation	G	T	p.E219X
THYM	TCGA-ZB-A96E-01	ST6GALNAC1	ENST00000359088.5	chr17	74621931:74622000:74622087:74622177:74622370:74622474,74621931:74622000:74622087:74622177:74622732:74622871,	74622088	74622177	74622104	74622104	Nonsense_Mutation	G	A	p.R497X
THYM	TCGA-ZB-A96E-01	NTNG1	ENST00000370067.1,ENST00000370074.4,ENST00000370070.2,ENST00000370071.2,ENST00000370065.1,ENST00000370068.1,ENST00000294649.4,ENST00000542803.1,ENST00000370061.3,ENST00000370073.2,ENST00000370066.1,ENST00000370072.3	chr1	107691215:107691461:107866903:107867544:107937775:107937948,	107866904	107867544	107867357	107867357	Nonsense_Mutation	G	T	p.G234X
THYM	TCGA-ZB-A96E-01	BPIFB2	ENST00000170150.3	chr20	31596353:31596489:31598829:31598923:31600608:31600713,	31598830	31598923	31598835	31598835	Nonsense_Mutation	G	T	p.E39X
THYM	TCGA-4X-A9FD-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5268416:5268533:5271664:5271763:5276608:5276749,	5271665	5271763	5271734	5271734	Nonsense_Mutation	C	T	p.Q619X
THYM	TCGA-4X-A9FD-01	FHAD1	ENST00000375998.4,ENST00000481324.1,ENST00000314740.8,ENST00000375999.3,ENST00000471347.1,ENST00000358897.4,ENST00000314668.9,ENST00000444385.1,ENST00000529606.1,ENST00000417793.1	chr1	15692322:15692429:15693958:15694118:15695865:15695998,	15693959	15694118	15694045	15694045	Nonsense_Mutation	G	T	p.E1059X
THYM	TCGA-4X-A9FD-01	RSRC1	ENST00000480119.1	chr3	157841660:157841780:157920860:157921034:158015827:158015864,157841654:157841780:157920860:157921034:157943445:157943522,	157920861	157921034	157920988	157920988	Nonsense_Mutation	G	T	p.E150X
THYM	TCGA-4V-A9QI-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177402:33177563:33177691:33177907:33178934:33178964,	33177692	33177907	33177804	33177804	Nonsense_Mutation	G	T	p.E118X
THYM	TCGA-4V-A9QI-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10425157:10425303:10425466:10425706:10428524:10428560,	10425467	10425706	10425668	10425668	Nonsense_Mutation	G	T	p.E1526X
THYM	TCGA-4V-A9QI-01	FBXW8	ENST00000455858.2,ENST00000309909.5	chr12	117402501:117402659:117423010:117423207:117426467:117426674,	117423011	117423207	117423160	117423160	Nonsense_Mutation	G	T	p.E329X
THYM	TCGA-4V-A9QI-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000478060.1,ENST00000469667.1	chr16	76555935:76556154:76569441:76569681:76572012:76572237,	76569442	76569681	76569674	76569674	Nonsense_Mutation	C	A	p.C923X
THYM	TCGA-4V-A9QI-01	BCAS3	ENST00000407086.3,ENST00000585744.1,ENST00000588462.1,ENST00000408905.3,ENST00000390652.5,ENST00000589222.1,ENST00000588874.1	chr17	59024579:59024713:59067331:59067596:59093111:59093146,	59067332	59067596	59067428	59067428	Nonsense_Mutation	C	T	p.Q440X
THYM	TCGA-XU-AAXZ-01	GBP4	ENST00000355754.6	chr1	89654264:89654477:89655720:89656001:89656943:89657189,	89655721	89656001	89655891	89655891	Nonsense_Mutation	G	A	p.Q343X
THYM	TCGA-XU-AAXZ-01	CNTRL	ENST00000373855.1,ENST00000373851.2,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123887998:123888214:123898083:123898260:123900822:123900957,	123898084	123898260	123898123	123898123	Nonsense_Mutation	G	T	p.E689X
THYM	TCGA-XU-AAXZ-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346367	29346367	Nonsense_Mutation	G	T	p.E94X
THYM	TCGA-XU-AAXZ-01	CDC45	ENST00000455750.1,ENST00000483431.1,ENST00000487669.1,ENST00000438587.1,ENST00000263201.1,ENST00000437685.2,ENST00000491520.1,ENST00000407835.1	chr22	19467680:19467740:19468475:19468568:19470212:19470345,	19468476	19468568	19468529	19468529	Nonsense_Mutation	G	A	p.W55X
THYM	TCGA-XU-AAXZ-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753542	241753542	Nonsense_Mutation	C	T	p.Q413X
THYM	TCGA-XU-AAXZ-01	REG1B	ENST00000305089.3,ENST00000479258.1	chr2	79313492:79313630:79313937:79314056:79314674:79314784,	79313938	79314056	79313980	79313980	Nonsense_Mutation	G	T	p.C47X
THYM	TCGA-X7-A8M1-01	SWAP70	ENST00000534562.1,ENST00000524817.1,ENST00000447399.2,ENST00000318950.6	chr11	9754075:9754257:9759759:9759867:9761727:9761889,	9759760	9759867	9759823	9759823	Nonsense_Mutation	G	T	p.E382X
THYM	TCGA-X7-A8M1-01	TRAPPC9	ENST00000521667.1,ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	140743286:140743471:140744221:140744445:140898122:140898213,	140744222	140744445	140744396	140744396	Nonsense_Mutation	G	T	p.C1133X
THYM	TCGA-X7-A8M1-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086578	144086578	Nonsense_Mutation	C	A	p.S292X
THYM	TCGA-X7-A8M1-01	ENO3	ENST00000521659.1,ENST00000522798.1,ENST00000519602.1,ENST00000518175.1,ENST00000520221.1,ENST00000522249.1,ENST00000522301.1,ENST00000521811.1,ENST00000519834.1,ENST00000323997.6	chr17	4856345:4856404:4856566:4856636:4857006:4857140,	4856567	4856636	4856588	4856588	Nonsense_Mutation	G	T	p.E88X
THYM	TCGA-XM-A8RH-01	PPM1A	ENST00000325658.3	chr14	60716377:60716395:60749401:60750255:60752341:60752459,60717148:60717199:60749401:60750255:60752341:60752459,	60749402	60750255	60749488	60749488	Nonsense_Mutation	C	T	p.R96X
THYM	TCGA-XM-A8RH-01	C18orf21	ENST00000587873.1,ENST00000333234.5,ENST00000269194.6,ENST00000592875.1	chr18	33554902:33555058:33557372:33557563:33558797:33558836,	33557373	33557563	33557533	33557533	Nonsense_Mutation	C	A	p.S154X
THYM	TCGA-XM-A8RH-01	GNA15	ENST00000586082.1,ENST00000262958.3	chr19	3150128:3150283:3151704:3151833:3155820:3155824,	3151705	3151833	3151736	3151736	Nonsense_Mutation	G	T	p.E173X
THYM	TCGA-ZB-A96G-01	GAS8	ENST00000540721.1,ENST00000569558.1,ENST00000536122.1,ENST00000566266.1,ENST00000569399.1,ENST00000268699.4	chr16	90103639:90103807:90104169:90104256:90106707:90106917,	90104170	90104256	90104242	90104242	Nonsense_Mutation	C	T	p.Q333X
THYM	TCGA-ZB-A96G-01	CLSTN1	ENST00000377298.4,ENST00000435891.1,ENST00000361311.4,ENST00000377288.3	chr1	9790182:9790763:9791263:9791448:9791818:9791954,	9791264	9791448	9791411	9791411	Nonsense_Mutation	G	T	p.C867X
THYM	TCGA-ZB-A96G-01	CLSTN1	ENST00000477264.1	chr1	9790182:9790763:9791179:9791448:9791818:9791954,	9791180	9791448	9791411	9791411	Nonsense_Mutation	G	T	p.C867X
THYM	TCGA-ZB-A96G-01	EIF4A2	ENST00000492144.1,ENST00000426808.1,ENST00000429589.1,ENST00000323963.5,ENST00000443963.1,ENST00000425053.1,ENST00000475653.1,ENST00000440191.2,ENST00000468362.1,ENST00000356531.5	chr3	186503952:186504062:186504290:186504434:186504915:186505053,	186504291	186504434	186504396	186504396	Nonsense_Mutation	G	T	p.E245X
THYM	TCGA-ZB-A96G-01	MEIS1	ENST00000490726.1,ENST00000272369.9,ENST00000398506.2,ENST00000407092.2,ENST00000488550.1,ENST00000444274.2,ENST00000560281.2	chr2	66666452:66666803:66666974:66667116:66667693:66667744,66664938:66665095:66666974:66667116:66667693:66667744,	66666975	66667116	66667042	66667042	Nonsense_Mutation	G	T	p.E103X
THYM	TCGA-ZB-A96G-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327238	188327238	Nonsense_Mutation	C	A	p.S240X
THYM	TCGA-4V-A9QL-01	UBE3C	ENST00000348165.5	chr7	157000396:157000629:157009560:157009665:157013382:157013470,	157009561	157009665	157009639	157009639	Nonsense_Mutation	G	T	p.E630X
THYM	TCGA-4V-A9QL-01	ALB	ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74276096:74276126:74277712:74277842:74279136:74279351,	74277713	74277842	74277801	74277801	Nonsense_Mutation	G	T	p.E268X
THYM	TCGA-XM-A8RI-01	DIP2A	ENST00000466639.1	chr21	47916900:47917020:47918494:47918746:47924270:47924402,47916900:47917020:47918494:47918746:47924273:47924402,47916900:47917020:47918494:47918746:47929169:47929289,	47918495	47918746	47918533	47918533	Nonsense_Mutation	C	T	p.R148X
THYM	TCGA-XM-A8RI-01	KLHL32	ENST00000369261.4,ENST00000536676.1	chr6	97512503:97512602:97533001:97533217:97561658:97562055,	97533002	97533217	97533107	97533107	Nonsense_Mutation	G	T	p.E173X
THYM	TCGA-XM-A8RI-01	HDAC3	ENST00000519474.1,ENST00000523088.1,ENST00000305264.3,ENST00000469550.2	chr5	141008171:141008206:141008739:141008873:141009250:141009306,	141008740	141008873	141008852	141008852	Nonsense_Mutation	G	T	p.Y166X
THYM	TCGA-XM-A8RI-01	MRPL46	ENST00000312475.4	chr15	89002838:89003094:89007933:89008107:89010380:89010620,89002838:89003094:89007933:89008107:89008817:89008978,	89007934	89008107	89007989	89007989	Nonsense_Mutation	C	T	p.W178X
THYM	TCGA-3T-AA9L-01	MAP2K5	ENST00000559262.1,ENST00000354498.5,ENST00000558392.1,ENST00000439036.1,ENST00000560591.1,ENST00000395476.2,ENST00000178640.5	chr15	67885263:67885312:67893022:67893087:67923225:67923265,	67893023	67893087	67893071	67893071	Nonsense_Mutation	G	T	p.G177X
THYM	TCGA-X7-A8DI-01	HPS4	ENST00000439453.1,ENST00000429411.1	chr22	26864516:26864589:26866684:26866888:26868267:26868384,	26866685	26866888	26866724	26866724	Nonsense_Mutation	G	T	p.S186X
THYM	TCGA-X7-A8DI-01	HPS4	ENST00000466781.1,ENST00000398145.2,ENST00000398141.1,ENST00000336873.5,ENST00000422379.2,ENST00000485842.1,ENST00000402105.3,ENST00000496385.1	chr22	26864516:26864589:26866684:26866779:26868267:26868384,	26866685	26866779	26866724	26866724	Nonsense_Mutation	G	T	p.S186X
THYM	TCGA-3G-AB19-01	TTC23L	ENST00000505624.1,ENST00000514080.1	chr5	34866996:34867174:34869009:34869118:34880285:34880413,	34869010	34869118	34869100	34869100	Nonsense_Mutation	G	T	p.G311X
THYM	TCGA-3G-AB19-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881492	48881492	Nonsense_Mutation	G	T	p.E72X
THYM	TCGA-3G-AB19-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76393528:76393671:76395312:76395745:76397700:76398009,	76395313	76395745	76395392	76395392	Nonsense_Mutation	C	T	p.R530X
THYM	TCGA-XU-A92X-01	ZSCAN20	ENST00000373413.2,ENST00000480917.1	chr1	33938260:33938292:33944779:33945306:33954064:33954251,	33944780	33945306	33944929	33944929	Nonsense_Mutation	C	T	p.Q14X
THYM	TCGA-XU-A92X-01	LIFR	ENST00000263409.4,ENST00000453190.2	chr5	38484876:38484970:38485920:38486082:38489179:38489347,	38485921	38486082	38485984	38485984	Nonsense_Mutation	G	A	p.R812X
THYM	TCGA-XU-AAY0-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000478340.1,ENST00000467020.1,ENST00000464112.1	chr6	35437212:35437306:35437955:35438128:35438356:35438417,	35437956	35438128	35438009	35438009	Nonsense_Mutation	C	T	p.R122X
THYM	TCGA-XU-AAY0-01	SIGLEC10	ENST00000339313.5,ENST00000353836.5,ENST00000356298.5,ENST00000525998.1,ENST00000432469.2	chr19	51919919:51920204:51920335:51920719:51920798:51920965,	51920336	51920719	51920687	51920687	Nonsense_Mutation	G	A	p.R24X
THYM	TCGA-XU-A92Q-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349608	89349608	Nonsense_Mutation	G	T	p.Y1114X
THYM	TCGA-XU-A92Q-01	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50615899	50615899	Nonsense_Mutation	C	A	p.E179X
THYM	TCGA-XU-A92Q-01	POU2F1	ENST00000541643.3,ENST00000557874.1,ENST00000443275.1,ENST00000271411.4,ENST00000560232.2,ENST00000452019.1,ENST00000367865.1,ENST00000492850.1,ENST00000367866.2,ENST00000420254.3,ENST00000367862.5	chr1	167343392:167343533:167345265:167345392:167353093:167353106,	167345266	167345392	167345347	167345347	Nonsense_Mutation	C	T	p.Q225X
THYM	TCGA-XU-A931-01	DNMT3L	ENST00000418993.1,ENST00000270172.3	chr21	45679519:45679594:45680677:45680722:45681036:45681149,	45680678	45680722	45680702	45680702	Nonsense_Mutation	T	A	p.K43X
THYM	TCGA-XU-A931-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32772916:32773081:32774379:32774548:32800222:32800433,	32774380	32774548	32774488	32774488	Nonsense_Mutation	G	T	p.E4362X
THYM	TCGA-XU-A931-01	CBFB	ENST00000290858.6,ENST00000561924.2	chr16	67100584:67100701:67116115:67116242:67132612:67132714,	67116116	67116242	67116170	67116170	Nonsense_Mutation	G	T	p.E152X
THYM	TCGA-XU-A931-01	CBFB	ENST00000412916.2	chr16	67100584:67100701:67116115:67116211:67132612:67132714,	67116116	67116211	67116170	67116170	Nonsense_Mutation	G	T	p.E152X
THYM	TCGA-YT-A95F-01	DFFB	ENST00000378209.3,ENST00000338895.3,ENST00000491998.1	chr1	3775281:3775408:3782375:3782564:3784537:3784617,	3782376	3782564	3782543	3782543	Nonsense_Mutation	G	T	p.E137X
THYM	TCGA-YT-A95F-01	CEP192	ENST00000506447.1,ENST00000513432.1,ENST00000325971.8,ENST00000589596.1	chr18	13015326:13015447:13017186:13017335:13018478:13018614,	13017187	13017335	13017240	13017240	Nonsense_Mutation	G	T	p.E232X
THYM	TCGA-YT-A95F-01	RUVBL2	ENST00000596247.1	chr19	49502575:49502630:49506535:49506591:49507533:49507639,49496872:49497159:49506535:49506591:49507533:49507639,49502575:49502630:49506535:49506591:49507463:49507675,	49506536	49506591	49506589	49506589	Nonsense_Mutation	C	T	p.Q41X
THYM	TCGA-YT-A95F-01	RPL14	ENST00000416518.1,ENST00000435633.1,ENST00000396203.2,ENST00000338970.6,ENST00000479563.1	chr3	40500132:40500227:40502897:40502997:40503098:40503152,	40502898	40502997	40502965	40502965	Nonsense_Mutation	C	T	p.R90X
THYM	TCGA-YT-A95F-01	RPL14	ENST00000481798.1	chr3	40500210:40500227:40502897:40503152:40503429:40503494,	40502898	40503152	40502965	40502965	Nonsense_Mutation	C	T	p.R90X
THYM	TCGA-YT-A95F-01	ST3GAL6	ENST00000489112.1,ENST00000460774.1,ENST00000490684.1,ENST00000497621.1,ENST00000492254.1,ENST00000468553.1,ENST00000486334.2,ENST00000485391.1,ENST00000483910.1,ENST00000394162.1,ENST00000497008.1	chr3	98487282:98487373:98489722:98489800:98491656:98491760,	98489723	98489800	98489760	98489760	Nonsense_Mutation	C	T	p.Q96X
THYM	TCGA-YT-A95F-01	MYO1E	ENST00000559489.1,ENST00000288235.4	chr15	59506426:59506513:59506838:59506919:59510089:59510286,	59506839	59506919	59506881	59506881	Nonsense_Mutation	G	T	p.Y382X
THYM	TCGA-YT-A95F-01	WDR66	ENST00000540779.1,ENST00000397454.2,ENST00000288912.4	chr12	122359313:122359589:122361527:122361896:122369651:122369792,	122361528	122361896	122361570	122361570	Nonsense_Mutation	G	T	p.E141X
THYM	TCGA-XU-A92U-01	COL4A2	ENST00000360467.5	chr13	111144416:111144524:111145557:111145629:111147688:111147814,	111145558	111145629	111145566	111145566	Nonsense_Mutation	G	T	p.G1191X
THYM	TCGA-XU-A92U-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175348687:175348873:175355167:175355437:175360423:175360574,	175355168	175355437	175355266	175355266	Nonsense_Mutation	G	T	p.S560X
THYM	TCGA-XU-A92U-01	CTIF	ENST00000256413.3,ENST00000591387.1,ENST00000382998.4,ENST00000587752.1,ENST00000588345.1	chr18	46145908:46146116:46162984:46163056:46190122:46190182,	46162985	46163056	46163039	46163039	Nonsense_Mutation	C	T	p.R79X
THYM	TCGA-XU-A92U-01	PAIP1	ENST00000436644.2,ENST00000338972.4,ENST00000306846.3,ENST00000511321.1,ENST00000514514.1	chr5	43536955:43537046:43539025:43539137:43543105:43543218,	43539026	43539137	43539115	43539115	Nonsense_Mutation	T	A	p.K253X
THYM	TCGA-ZB-A96D-01	RBMS3	ENST00000396583.3,ENST00000383767.2,ENST00000456853.1,ENST00000273139.9,ENST00000434693.2,ENST00000452462.1	chr3	29938869:29938966:29941195:29941246:29977576:29977687,	29941196	29941246	29941238	29941238	Nonsense_Mutation	C	T	p.Q324X
THYM	TCGA-ZB-A96D-01	CTC1	ENST00000315684.8	chr17	8141709:8141947:8146302:8146466:8151321:8151359,	8146303	8146466	8146451	8146451	Nonsense_Mutation	C	A	p.E17X
THYM	TCGA-ZB-A96D-01	FKBP1A	ENST00000400137.4,ENST00000381719.3,ENST00000381724.3,ENST00000381715.1	chr20	1352755:1352884:1356134:1356247:1373477:1373525,	1356135	1356247	1356173	1356173	Nonsense_Mutation	G	A	p.Q54X
THYM	TCGA-X7-A8D9-01	TMEM237	ENST00000409883.2,ENST00000286196.5,ENST00000409444.2	chr2	202490803:202490870:202492043:202492137:202492798:202492872,	202492044	202492137	202492102	202492102	Nonsense_Mutation	G	A	p.Q327X
THYM	TCGA-X7-A8D9-01	DONSON	ENST00000457359.1,ENST00000442660.1,ENST00000303071.5,ENST00000303113.6,ENST00000417871.1,ENST00000437395.1	chr21	34950547:34950750:34951655:34951868:34953607:34953693,	34951656	34951868	34951771	34951771	Nonsense_Mutation	G	T	p.S483X
THYM	TCGA-ZB-A961-01	MS4A4A	ENST00000337908.4,ENST00000355131.3,ENST00000343968.4,ENST00000395016.3	chr11	60068473:60068530:60070031:60070190:60073572:60073674,	60070032	60070190	60070035	60070035	Nonsense_Mutation	C	T	p.R131X
THYM	TCGA-ZB-A961-01	CD276	ENST00000560928.1,ENST00000567582.1	chr15	73991980:73992059:73994720:73994934:73995112:73995162,	73994721	73994934	73994736	73994736	Nonsense_Mutation	C	T	p.Q74X
THYM	TCGA-ZB-A961-01	CD276	ENST00000318443.5,ENST00000561260.1,ENST00000561213.1,ENST00000560786.2	chr15	73991980:73992059:73994595:73994934:73995112:73995162,	73994596	73994934	73994736	73994736	Nonsense_Mutation	C	T	p.Q74X
THYM	TCGA-ZB-A961-01	SPTBN4	ENST00000595535.1,ENST00000338932.3,ENST00000352632.3,ENST00000598249.1,ENST00000344104.3	chr19	40998869:40998961:41000803:41000884:41003395:41003511,	41000804	41000884	41000843	41000843	Nonsense_Mutation	G	A	p.W209X
THYM	TCGA-ZB-A961-01	GNPTAB	ENST00000299314.7	chr12	102151349:102151435:102153807:102153921:102154904:102155124,	102153808	102153921	102153831	102153831	Nonsense_Mutation	C	A	p.E1076X
THYM	TCGA-ZB-A961-01	UBE3B	ENST00000538070.1,ENST00000434735.2,ENST00000342494.3	chr12	109962242:109962308:109964162:109964221:109967694:109967877,	109964163	109964221	109964214	109964214	Nonsense_Mutation	G	T	p.E874X
THYM	TCGA-XM-AAZ1-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000396085.1,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	19970236:19970626:20005670:20005793:20057504:20057643,	20005671	20005793	20005780	20005780	Nonsense_Mutation	G	T	p.G942X
THYM	TCGA-XM-AAZ1-01	STAB1	ENST00000321725.6,ENST00000481607.1	chr3	52537787:52537918:52538043:52538171:52538476:52538565,	52538044	52538171	52538105	52538105	Nonsense_Mutation	G	T	p.E362X
THYM	TCGA-X7-A8DC-01	CFDP1	ENST00000283882.3	chr16	75327805:75327940:75338921:75339080:75428987:75429034,	75338922	75339080	75338987	75338987	Nonsense_Mutation	C	T	p.W248X
THYM	TCGA-X7-A8DC-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58118534:58118658:58120342:58120499:58121705:58121895,	58120343	58120499	58120473	58120473	Nonsense_Mutation	G	T	p.E1580X
THYM	TCGA-X7-A8DC-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368826	37368826	Nonsense_Mutation	G	T	p.E1839X
THYM	TCGA-X7-A8DC-01	PAAF1	ENST00000540659.1	chr11	73611412:73611465:73620443:73620638:73625457:73625492,73611412:73611465:73620443:73620638:73627589:73627661,	73620444	73620638	73620512	73620512	Nonsense_Mutation	C	T	p.R201X
THYM	TCGA-ZL-A9V6-01	EHD2	ENST00000263277.3,ENST00000538399.1	chr19	48229425:48229481:48239625:48239790:48244137:48244394,	48239626	48239790	48239659	48239659	Nonsense_Mutation	G	T	p.E317X
THYM	TCGA-ZT-A8OM-01	XPR1	ENST00000367590.4,ENST00000367589.3	chr1	180842938:180843078:180849211:180849433:180853141:180855262,	180849212	180849433	180849360	180849360	Nonsense_Mutation	C	T	p.R653X
THYM	TCGA-ZT-A8OM-01	NID1	ENST00000264187.6	chr1	236180447:236180573:236187369:236187513:236189195:236189441,	236187370	236187513	236187374	236187374	Nonsense_Mutation	G	T	p.C708X
THYM	TCGA-ZT-A8OM-01	MPDZ	ENST00000447879.1,ENST00000541718.1,ENST00000539508.1,ENST00000536827.1,ENST00000381015.4,ENST00000546205.1,ENST00000319217.7,ENST00000381022.2	chr9	13183416:13183584:13186268:13186385:13188782:13188992,	13186269	13186385	13186352	13186352	Nonsense_Mutation	C	A	p.E800X
THYM	TCGA-ZT-A8OM-01	SNX32	ENST00000308342.6	chr11	65618525:65618631:65618798:65618874:65619110:65619150,	65618799	65618874	65618826	65618826	Nonsense_Mutation	C	A	p.S246X
THYM	TCGA-ZT-A8OM-01	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782751	207782751	Nonsense_Mutation	G	T	p.E2005X
THYM	TCGA-3Q-A9WF-01	WDR18	ENST00000587001.2,ENST00000585809.1,ENST00000586317.1,ENST00000591985.2,ENST00000251289.5	chr19	984384:984563:985864:985975:989761:989895,	985865	985975	985973	985973	Nonsense_Mutation	G	T	p.E107X
THYM	TCGA-3Q-A9WF-01	C12orf29	ENST00000548757.2,ENST00000453037.3,ENST00000550333.1,ENST00000356891.3,ENST00000547468.1	chr12	88437375:88437492:88439358:88439556:88440583:88440726,	88439359	88439556	88439398	88439398	Nonsense_Mutation	G	A	p.W154X
THYM	TCGA-3G-AB0Q-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000348332.3,ENST00000405141.1	chr2	24881529:24881635:24888617:24888784:24896234:24896332,	24888618	24888784	24888670	24888670	Nonsense_Mutation	G	T	p.E48X
THYM	TCGA-3G-AB0Q-01	KRBOX4	ENST00000344302.4,ENST00000360017.5,ENST00000476762.1,ENST00000377919.2,ENST00000298190.6,ENST00000478600.1,ENST00000487081.1	chrX	46309865:46309910:46322182:46322309:46322632:46322712,	46322183	46322309	46322183	46322183	Nonsense_Mutation	G	T	p.E6X
THYM	TCGA-3G-AB0Q-01	SRCAP	ENST00000344771.4,ENST00000483083.1,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30723582:30723760:30723999:30724136:30724528:30724698,	30724000	30724136	30724053	30724053	Nonsense_Mutation	G	T	p.E683X
THYM	TCGA-3G-AB0Q-01	PIWIL1	ENST00000245255.3	chr12	130842025:130842098:130845724:130845925:130846042:130846146,	130845725	130845925	130845896	130845896	Nonsense_Mutation	G	T	p.G613X
THYM	TCGA-3G-AB0T-01	CNTRL	ENST00000373855.1,ENST00000373851.2,ENST00000238341.5	chr9	123877368:123877478:123880623:123880818:123886208:123886362,	123880624	123880818	123880696	123880696	Nonsense_Mutation	C	T	p.Q510X
THYM	TCGA-ZB-A969-01	NUP88	ENST00000573584.1,ENST00000574867.1,ENST00000225696.4	chr17	5298210:5298301:5302871:5302970:5307418:5307566,	5302872	5302970	5302955	5302955	Nonsense_Mutation	G	T	p.S403X
THYM	TCGA-ZB-A969-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699274	30699274	Nonsense_Mutation	G	T	p.E377X
THYM	TCGA-5U-AB0D-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61834068	61834068	Nonsense_Mutation	G	T	p.Y408X
THYM	TCGA-5U-AB0D-01	ATXN2	ENST00000389153.4,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000392645.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111951277:111951343:111953957:111954167:111956052:111956231,	111953958	111954167	111954145	111954145	Nonsense_Mutation	G	T	p.C556X
THYM	TCGA-5U-AB0D-01	ABCC12	ENST00000534418.1,ENST00000448542.1,ENST00000532494.1,ENST00000529504.1,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48125030:48125120:48130656:48130843:48134782:48134920,	48130657	48130843	48130666	48130666	Nonsense_Mutation	G	T	p.Y1062X
THYM	TCGA-5U-AB0D-01	ACPP	ENST00000336375.5,ENST00000351273.7,ENST00000512463.1	chr3	132056299:132056398:132061395:132061488:132063770:132063903,	132061396	132061488	132061414	132061414	Nonsense_Mutation	G	T	p.G192X
THYM	TCGA-5U-AB0D-01	ACP2	ENST00000256997.3,ENST00000537863.1,ENST00000529663.1,ENST00000531547.1,ENST00000531004.1,ENST00000533929.1,ENST00000527256.1,ENST00000534448.1	chr11	47264789:47264872:47266285:47266418:47267232:47267385,47264789:47264872:47266285:47266418:47266855:47266945,	47266286	47266418	47266389	47266389	Nonsense_Mutation	C	T	p.W223X
THYM	TCGA-X7-A8M7-01	MCM8	ENST00000265187.4,ENST00000378896.3	chr20	5948523:5948671:5952652:5952683:5958521:5958663,5948523:5948671:5952652:5952683:5953701:5953842,	5952653	5952683	5952681	5952681	Nonsense_Mutation	G	T	p.E418X
THYM	TCGA-X7-A8M7-01	CD44	ENST00000425428.2,ENST00000526669.2,ENST00000434472.2,ENST00000527326.1,ENST00000360158.4,ENST00000433354.2,ENST00000525688.1,ENST00000415148.2,ENST00000428726.2,ENST00000449691.2,ENST00000437706.2,ENST00000278385.6,ENST00000263398.6,ENST00000433892.2,ENST00000279452.6,ENST00000352818.4	chr11	35240890:35240934:35243200:35243279:35250675:35250711,	35243201	35243279	35243274	35243274	Nonsense_Mutation	A	T	p.K86X
THYM	TCGA-X7-A8M7-01	ADD1	ENST00000398129.1,ENST00000264758.7,ENST00000514940.1,ENST00000446856.1	chr4	2916668:2916767:2927740:2927839:2929897:2930018,	2927741	2927839	2927764	2927764	Nonsense_Mutation	C	T	p.Q627X
THYM	TCGA-X7-A8M6-01	FAM168A	ENST00000356467.4	chr11	73118557:73118688:73130918:73131044:73141734:73141815,73122438:73122581:73130918:73131044:73136066:73136093,73122438:73122581:73130918:73131044:73141734:73141815,	73130919	73131044	73131008	73131008	Nonsense_Mutation	G	T	p.S63X
THYM	TCGA-X7-A8M6-01	PTPRF	ENST00000372413.3,ENST00000412568.2,ENST00000496447.1,ENST00000372414.3,ENST00000372407.4,ENST00000438120.1,ENST00000429895.1,ENST00000359947.4,ENST00000422171.2,ENST00000414879.1	chr1	44085350:44085529:44085765:44085892:44086124:44086250,	44085766	44085892	44085815	44085815	Nonsense_Mutation	G	T	p.E1721X
THYM	TCGA-X7-A8M6-01	MAST3	ENST00000262811.6,ENST00000608648.1	chr19	18235074:18235176:18235451:18235584:18239209:18239268,	18235452	18235584	18235581	18235581	Nonsense_Mutation	G	T	p.E330X
THYM	TCGA-XM-A8R8-01	PRMT7	ENST00000339507.5,ENST00000568975.1,ENST00000569047.3,ENST00000562050.1,ENST00000569571.1,ENST00000563520.1,ENST00000565356.1,ENST00000566341.1,ENST00000562381.3,ENST00000564441.1	chr16	68358709:68358735:68362968:68363077:68371361:68371424,	68362969	68363077	68363008	68363008	Nonsense_Mutation	G	T	p.E108X
THYM	TCGA-XM-A8R8-01	HIF1A	ENST00000557206.1,ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1,ENST00000553999.1	chr14	62188226:62188372:62188456:62188541:62193423:62193481,	62188457	62188541	62188460	62188460	Nonsense_Mutation	G	T	p.E150X
THYM	TCGA-XM-A8R8-01	DENND4A	ENST00000443035.3,ENST00000568515.1,ENST00000564674.1,ENST00000431932.2	chr15	66034052:66034122:66044716:66044966:66048477:66048810,	66044717	66044966	66044868	66044868	Nonsense_Mutation	G	T	p.S137X
THYM	TCGA-X7-A8M4-01	MIPOL1	ENST00000539062.2,ENST00000327441.7,ENST00000536774.1,ENST00000396294.2,ENST00000537471.1	chr14	37892059:37892154:37969112:37969343:38016109:38016337,	37969113	37969343	37969285	37969285	Nonsense_Mutation	G	T	p.E402X
THYM	TCGA-X7-A8M4-01	FAM178B	ENST00000490605.2,ENST00000417561.3,ENST00000327896.3	chr2	97568356:97568444:97586901:97586999:97587214:97587391,	97586902	97586999	97586985	97586985	Nonsense_Mutation	G	T	p.C493X
THYM	TCGA-ZB-A96A-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264305	75264305	Nonsense_Mutation	G	T	p.E769X
THYM	TCGA-ZB-A96A-01	CREB5	ENST00000409603.1,ENST00000396298.2,ENST00000396299.2,ENST00000396300.2,ENST00000357727.2	chr7	28843815:28844139:28848803:28849031:28857687:28857796,	28848804	28849031	28848987	28848987	Nonsense_Mutation	G	T	p.E404X
THYM	TCGA-ZB-A96A-01	ATP9B	ENST00000426216.2,ENST00000458297.2,ENST00000586366.1,ENST00000307671.7,ENST00000586722.1	chr18	76829489:76829529:76856475:76856649:76870354:76870505,	76856476	76856649	76856609	76856609	Nonsense_Mutation	G	T	p.E85X
THYM	TCGA-X7-A8M3-01	ELMO2	ENST00000290246.6,ENST00000425546.1,ENST00000396391.1,ENST00000439931.2,ENST00000352077.2,ENST00000445496.2,ENST00000372176.1,ENST00000481852.1,ENST00000488853.1,ENST00000467800.1,ENST00000454865.2,ENST00000462491.1	chr20	45003076:45003079:45003174:45003279:45003874:45004009,	45003175	45003279	45003249	45003249	Nonsense_Mutation	G	A	p.Q366X
THYM	TCGA-X7-A8M3-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370636	240370636	Nonsense_Mutation	G	T	p.E842X
THYM	TCGA-X7-A8M3-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199864	20199864	Nonsense_Mutation	G	T	p.C40X
THYM	TCGA-YT-A95E-01	STK17A	ENST00000462448.1,ENST00000319357.5	chr7	43635499:43635712:43647854:43647999:43659195:43659322,	43647855	43647999	43647937	43647937	Nonsense_Mutation	C	T	p.R168X
THYM	TCGA-YT-A95E-01	SNTB1	ENST00000517992.1,ENST00000519177.1,ENST00000395601.3	chr8	121644849:121644891:121705931:121706148:121823512:121823803,	121705932	121706148	121706137	121706137	Nonsense_Mutation	G	A	p.R195X
THYM	TCGA-YT-A95E-01	CYP2A6	ENST00000600495.1	chr19	41354518:41354668:41355722:41355885:41356141:41356352,	41355723	41355885	41355765	41355765	Nonsense_Mutation	G	A	p.R101X
THYM	TCGA-YT-A95E-01	PRDM2	ENST00000376048.5,ENST00000235372.7,ENST00000311066.5	chr1	14057512:14057612:14068499:14068652:14075855:14075958,14059273:14059377:14068499:14068652:14075855:14075958,	14068500	14068652	14068518	14068518	Nonsense_Mutation	G	T	p.G84X
THYM	TCGA-XM-A8RE-01	SLC35A2	ENST00000247138.5	chrX	48760537:48760742:48762022:48762759:48763668:48763820,	48762023	48762759	48762433	48762433	Nonsense_Mutation	C	T	p.W251X
THYM	TCGA-XM-A8RE-01	EDNRB	ENST00000334286.5,ENST00000377211.4	chr13	78469623:78472469:78473993:78474102:78474655:78474789,	78473994	78474102	78474027	78474027	Nonsense_Mutation	A	T	p.Y477X
THYM	TCGA-XM-A8RE-01	PLA2G7	ENST00000538237.1,ENST00000541026.1,ENST00000274793.7,ENST00000537365.1	chr6	46678281:46678395:46679232:46679356:46680005:46680074,	46679233	46679356	46679244	46679244	Nonsense_Mutation	G	A	p.R218X
THYM	TCGA-XM-A8RE-01	PTPN23	ENST00000431726.1	chr3	47422559:47422670:47437632:47437707:47446141:47446269,47422559:47422670:47437632:47437707:47446494:47446571,	47437633	47437707	47437678	47437678	Nonsense_Mutation	G	T	p.E44X
THYM	TCGA-ZB-A96K-01	STX3	ENST00000535361.1,ENST00000530498.1,ENST00000529177.1,ENST00000337979.4,ENST00000300150.7	chr11	59540689:59540767:59554509:59554609:59556345:59556420,	59554510	59554609	59554513	59554513	Nonsense_Mutation	G	T	p.E40X
THYM	TCGA-ZB-A96K-01	ADCK1	ENST00000341211.5,ENST00000238561.5	chr14	78353433:78353592:78365442:78365601:78390799:78390855,78353433:78353592:78365442:78365601:78374145:78374262,	78365443	78365601	78365560	78365560	Nonsense_Mutation	G	T	p.E234X
THYM	TCGA-ZB-A96K-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203421008	203421008	Nonsense_Mutation	G	T	p.E874X
THYM	TCGA-ZB-A96K-01	COL18A1	ENST00000359759.4,ENST00000355480.5,ENST00000400337.2	chr21	46893808:46893895:46895389:46895449:46896264:46896394,	46895390	46895449	46895429	46895429	Nonsense_Mutation	G	T	p.E440X
THYM	TCGA-ZC-AAA7-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109617108:109617250:109644723:109644796:109661244:109661397,	109644724	109644796	109644728	109644728	Nonsense_Mutation	C	T	p.Q792X
THYM	TCGA-ZC-AAA7-01	SMTN	ENST00000347557.2,ENST00000489337.1,ENST00000358743.1,ENST00000460658.1,ENST00000466272.1,ENST00000333137.7	chr22	31485684:31486005:31486093:31486166:31486793:31486865,	31486094	31486166	31486112	31486112	Nonsense_Mutation	G	T	p.E327X
THYM	TCGA-ZB-A96H-01	FBXO7	ENST00000420700.1	chr22	32875119:32875262:32879883:32880111:32881054:32881196,32871001:32871111:32879883:32880111:32881054:32881196,	32879884	32880111	32879941	32879941	Nonsense_Mutation	G	T	p.E159X
THYM	TCGA-ZB-A96H-01	KCNH1	ENST00000271751.4,ENST00000367007.4	chr1	211256121:211256240:211263903:211264032:211276837:211276944,	211263904	211264032	211263959	211263959	Nonsense_Mutation	G	T	p.C128X
THYM	TCGA-ZB-A96H-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000440957.2,ENST00000348417.2,ENST00000349441.2	chr3	129207099:129207240:129214288:129214450:129218744:129218911,129210983:129211037:129214288:129214450:129218744:129218911,	129214289	129214450	129214364	129214364	Nonsense_Mutation	G	T	p.E759X
THYM	TCGA-X7-A8DE-01	ZSWIM8	ENST00000603114.1,ENST00000398706.2,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1	chr10	75545440:75545844:75548427:75548581:75548853:75548948,	75548428	75548581	75548568	75548568	Nonsense_Mutation	G	T	p.E117X
THYM	TCGA-X7-A8M8-01	PMM1	ENST00000485648.1,ENST00000216259.7,ENST00000482178.1,ENST00000472620.1,ENST00000463617.1	chr22	41972940:41973444:41973811:41973927:41974809:41974885,	41973812	41973927	41973875	41973875	Nonsense_Mutation	G	T	p.C201X
THYM	TCGA-ZB-A962-01	CDCA8	ENST00000327331.2,ENST00000373055.1	chr1	38171112:38171239:38172649:38172736:38173993:38175385,	38172650	38172736	38172716	38172716	Nonsense_Mutation	G	T	p.G260X
THYM	TCGA-ZB-A962-01	SLC9A5	ENST00000563723.1,ENST00000564812.1,ENST00000299798.11,ENST00000564704.1,ENST00000566626.1	chr16	67298254:67298425:67298942:67299009:67299990:67300128,	67298943	67299009	67298985	67298985	Nonsense_Mutation	C	T	p.R686X
THYM	TCGA-XU-A933-01	ALPK3	ENST00000258888.5	chr15	85403267:85403303:85405865:85406146:85406782:85406871,	85405866	85406146	85405949	85405949	Nonsense_Mutation	C	T	p.R1607X
THYM	TCGA-XU-A933-01	IPP	ENST00000396478.3	chr1	46206572:46207004:46211791:46212133:46216268:46216321,	46211792	46212133	46211966	46211966	Nonsense_Mutation	G	A	p.Q40X
THYM	TCGA-XU-A933-01	SNAP23	ENST00000566035.1,ENST00000563830.1,ENST00000249647.3,ENST00000568841.1,ENST00000568514.1,ENST00000563765.1,ENST00000566327.1	chr15	42807434:42807552:42820459:42820618:42821872:42822002,	42820460	42820618	42820503	42820503	Nonsense_Mutation	G	T	p.G104X
THYM	TCGA-XU-A933-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357576	50357576	Nonsense_Mutation	A	C	p.Y455X
THYM	TCGA-XU-A933-01	ARHGAP22	ENST00000435790.2,ENST00000460425.1	chr10	49763507:49763595:49790997:49791197:49812807:49812997,49763507:49763595:49790997:49791197:49860278:49860366,	49790998	49791197	49791103	49791103	Nonsense_Mutation	C	T	p.W49X
THYM	TCGA-4X-A9F9-01	ELAC2	ENST00000584650.1,ENST00000484122.1,ENST00000426905.3,ENST00000480891.1,ENST00000446899.1,ENST00000395962.2,ENST00000578991.1,ENST00000476042.1,ENST00000338034.4	chr17	12903541:12903591:12905590:12905676:12905757:12905896,	12905591	12905676	12905673	12905673	Nonsense_Mutation	C	A	p.E408X
THYM	TCGA-4X-A9F9-01	XYLB	ENST00000207870.3,ENST00000472721.1,ENST00000542835.1,ENST00000424034.1	chr3	38418411:38418482:38420736:38420833:38436995:38437054,	38420737	38420833	38420761	38420761	Nonsense_Mutation	G	T	p.E407X
THYM	TCGA-4X-A9F9-01	FRS2	ENST00000299293.2,ENST00000549921.1,ENST00000397997.2,ENST00000550389.1,ENST00000551325.1,ENST00000550937.1	chr12	69962784:69962876:69964110:69964297:69965055:69965075,	69964111	69964297	69964267	69964267	Nonsense_Mutation	G	T	p.E75X
THYM	TCGA-4X-A9F9-01	NR4A1	ENST00000394825.1	chr12	52435593:52435713:52448110:52448988:52449813:52449935,52445246:52445352:52448110:52448988:52449813:52449935,	52448111	52448988	52448476	52448476	Nonsense_Mutation	G	T	p.E135X
THYM	TCGA-4X-A9F9-01	ECT2L	ENST00000401414.3,ENST00000423192.1,ENST00000367682.2	chr6	139134308:139134477:139135627:139135740:139159488:139159541,	139135628	139135740	139135637	139135637	Nonsense_Mutation	G	T	p.E26X
THYM	TCGA-4X-A9F9-01	TAOK2	ENST00000308893.4,ENST00000543033.1,ENST00000279394.3	chr16	29989058:29989225:29989409:29989481:29989572:29989674,	29989410	29989481	29989470	29989470	Nonsense_Mutation	C	T	p.Q65X
THYM	TCGA-4X-A9F9-01	CSRP2	ENST00000547435.1,ENST00000311083.5,ENST00000546966.1	chr12	77254063:77254193:77256955:77257124:77259928:77260041,	77256956	77257124	77257074	77257074	Nonsense_Mutation	C	A	p.E55X
THYM	TCGA-4V-A9QN-01	COL17A1	ENST00000369733.3,ENST00000353479.5	chr10	105812788:105812893:105813677:105813740:105813849:105813876,	105813678	105813740	105813693	105813693	Nonsense_Mutation	G	A	p.Q607X
THYM	TCGA-4V-A9QN-01	SLAMF7	ENST00000368043.3,ENST00000359331.4,ENST00000495334.1	chr1	160709093:160709146:160717983:160718304:160721975:160722036,160709093:160709146:160717983:160718304:160719610:160719883,	160717984	160718304	160718304	160718304	Nonsense_Mutation	G	T	p.E126X
THYM	TCGA-4X-A9FC-01	FAM114A1	ENST00000358869.2	chr4	38870086:38870167:38879691:38880047:38893363:38893416,	38879692	38880047	38880000	38880000	Nonsense_Mutation	G	T	p.E101X
THYM	TCGA-4X-A9FC-01	CTH	ENST00000464926.1,ENST00000411986.2,ENST00000370938.3	chr1	70887248:70887358:70889967:70890099:70895476:70895534,	70889968	70890099	70889980	70889980	Nonsense_Mutation	G	T	p.E157X
THYM	TCGA-4X-A9FC-01	HYOU1	ENST00000404233.3,ENST00000534233.1,ENST00000533381.1,ENST00000530473.1,ENST00000532752.1,ENST00000532421.1,ENST00000525859.1,ENST00000527310.2,ENST00000529972.1,ENST00000527038.2,ENST00000526656.1,ENST00000530467.1	chr11	118926204:118926283:118926461:118926555:118926781:118926879,	118926462	118926555	118926520	118926520	Nonsense_Mutation	C	A	p.E43X
THYM	TCGA-ZB-A96V-01	CHEK2	ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000402731.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1	chr22	29085122:29085203:29090019:29090105:29091114:29091197,	29090020	29090105	29090049	29090049	Nonsense_Mutation	C	A	p.E521X
THYM	TCGA-ZB-A96V-01	ANAPC5	ENST00000535641.1	chr12	121758187:121758262:121764898:121766300:121768385:121768475,	121764899	121766300	121766194	121766194	Nonsense_Mutation	C	T	p.W410X
THYM	TCGA-ZB-A96V-01	RTTN	ENST00000255674.6,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67727085:67727278:67733064:67733158:67741141:67741230,	67733065	67733158	67733068	67733068	Nonsense_Mutation	G	A	p.Q1582X
THYM	TCGA-ZB-A96V-01	PMP22	ENST00000580584.1,ENST00000312280.3,ENST00000395938.2	chr17	15134383:15134397:15142787:15142928:15162410:15162510,	15142788	15142928	15142852	15142852	Nonsense_Mutation	G	T	p.C85X
THYM	TCGA-ZB-A96V-01	EGF	ENST00000503392.1,ENST00000265171.5	chr4	110834396:110834618:110862101:110862301:110864409:110864591,	110862102	110862301	110862173	110862173	Nonsense_Mutation	G	T	p.E67X
THYM	TCGA-4X-A9FA-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561910	32561910	Nonsense_Mutation	A	T	p.R679X
THYM	TCGA-4X-A9FA-01	ZFP28	ENST00000589836.1,ENST00000591844.1,ENST00000301318.3	chr19	57050993:57051085:57058876:57059003:57059175:57059271,	57058877	57059003	57058933	57058933	Nonsense_Mutation	G	A	p.W119X
THYM	TCGA-5G-A9ZZ-01	UEVLD	ENST00000379387.4,ENST00000320750.6	chr11	18596893:18596959:18600270:18600355:18610159:18610221,18591891:18591924:18600270:18600355:18610159:18610221,	18600271	18600355	18600353	18600353	Nonsense_Mutation	G	T	p.Y15X
THYM	TCGA-5G-A9ZZ-01	SLA	ENST00000519747.1,ENST00000523610.1,ENST00000518594.1,ENST00000520106.1,ENST00000338087.5,ENST00000519341.1,ENST00000522002.1	chr8	134063136:134063160:134072344:134072445:134087097:134087198,	134072345	134072445	134072439	134072439	Nonsense_Mutation	C	T	p.W29X
THYM	TCGA-4V-A9QS-01	DARS	ENST00000537273.1	chr2	136718965:136719068:136736843:136736936:136740966:136741017,136718965:136719068:136736843:136736936:136742972:136743062,	136736844	136736936	136736847	136736847	Nonsense_Mutation	T	A	p.K72X
THYM	TCGA-XM-A8RL-01	ARHGAP15	ENST00000295095.6	chr2	144381701:144381836:144460987:144461093:144525557:144525917,	144460988	144461093	144461080	144461080	Nonsense_Mutation	G	T	p.G411X
THYM	TCGA-XM-A8RL-01	APOH	ENST00000577982.1	chr17	64222145:64222242:64224137:64224314:64225433:64225535,	64224138	64224314	64224226	64224226	Nonsense_Mutation	G	T	p.C51X
THYM	TCGA-XM-A8RL-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057209	30057209	Nonsense_Mutation	G	T	p.E231X
THYM	TCGA-XM-A8RL-01	RETSAT	ENST00000449375.1,ENST00000295802.4,ENST00000457495.2	chr2	85570233:85570504:85570761:85570921:85571361:85571451,85570233:85570504:85570761:85570921:85571121:85571288,	85570762	85570921	85570850	85570850	Nonsense_Mutation	G	T	p.Y535X
THYM	TCGA-XU-A92O-01	RUFY3	ENST00000417478.2,ENST00000536664.1,ENST00000381006.3,ENST00000513597.1,ENST00000502653.1,ENST00000226328.4	chr4	71630191:71630293:71634254:71634378:71639227:71639289,	71634255	71634378	71634265	71634265	Nonsense_Mutation	G	T	p.E255X
THYM	TCGA-XU-A92O-01	TCN1	ENST00000257264.3,ENST00000532419.1	chr11	59630054:59630195:59631379:59631559:59633864:59633944,	59631380	59631559	59631396	59631396	Nonsense_Mutation	G	T	p.Y81X
THYM	TCGA-XU-A92O-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86667934:86668012:86669979:86670137:86670656:86670733,	86669980	86670137	86670007	86670007	Nonsense_Mutation	G	T	p.E602X
THYM	TCGA-ZB-A96I-01	AFTPH	ENST00000422803.1,ENST00000409183.1,ENST00000238856.4,ENST00000498706.1,ENST00000409933.1,ENST00000238855.7	chr2	64796756:64796813:64800079:64800202:64806619:64806680,	64800080	64800202	64800128	64800128	Nonsense_Mutation	G	T	p.E774X
THYM	TCGA-ZB-A96I-01	TMC8	ENST00000590184.1	chr17	76133315:76133404:76133797:76133895:76134085:76134152,	76133798	76133895	76133819	76133819	Nonsense_Mutation	G	T	p.E425X
THYM	TCGA-ZB-A96I-01	TMC8	ENST00000591983.1	chr17	76131029:76131090:76133315:76133895:76134085:76134152,	76133316	76133895	76133819	76133819	Nonsense_Mutation	G	T	p.E425X
THYM	TCGA-ZB-A96I-01	MORF4L1	ENST00000558746.1,ENST00000379535.4,ENST00000558502.1,ENST00000426013.2,ENST00000331268.5,ENST00000559345.1	chr15	79185880:79185969:79186399:79186572:79187161:79187246,	79186400	79186572	79186437	79186437	Nonsense_Mutation	G	T	p.E262X
THYM	TCGA-XU-AAXY-01	POU5F1	ENST00000441888.3,ENST00000513407.1,ENST00000259915.8,ENST00000512818.1,ENST00000606567.1,ENST00000471529.2	chr6	31132128:31132644:31132904:31133063:31133347:31133478,	31132905	31133063	31132913	31132913	Nonsense_Mutation	C	A	p.E270X
THYM	TCGA-XU-AAXY-01	PHF20	ENST00000374000.4,ENST00000339089.6,ENST00000486408.1,ENST00000374012.3	chr20	34435271:34435356:34450934:34451322:34457359:34457473,34446223:34446303:34450934:34451322:34457359:34457473,	34450935	34451322	34451124	34451124	Nonsense_Mutation	G	T	p.E204X
THYM	TCGA-XU-AAXY-01	POT1	ENST00000357628.3,ENST00000609106.1,ENST00000607932.1,ENST00000393329.1	chr7	124482860:124483017:124486995:124487052:124491925:124492005,	124486996	124487052	124487043	124487043	Nonsense_Mutation	G	T	p.S320X
THYM	TCGA-ZB-A965-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103358463:103358623:103359130:103359320:103372298:103372418,	103359131	103359320	103359253	103359253	Nonsense_Mutation	G	A	p.R152X
THYM	TCGA-ZB-A965-01	LDB2	ENST00000508804.1,ENST00000506732.1,ENST00000502640.1,ENST00000513457.1,ENST00000441778.2,ENST00000304523.5,ENST00000515064.1	chr4	16590332:16590455:16597325:16597498:16760780:16760883,	16597326	16597498	16597428	16597428	Nonsense_Mutation	G	T	p.Y102X
THYM	TCGA-ZB-A965-01	ARHGEF10	ENST00000521927.1,ENST00000522435.1,ENST00000520359.1,ENST00000518288.1,ENST00000398564.1,ENST00000349830.3,ENST00000262112.6	chr8	1893646:1893821:1900870:1900993:1904914:1905371,	1900871	1900993	1900876	1900876	Nonsense_Mutation	C	T	p.Q1135X
THYM	TCGA-X7-A8M0-01	USP54	ENST00000339859.4,ENST00000394811.2,ENST00000408019.1,ENST00000428547.1	chr10	75277271:75277505:75279554:75279750:75283340:75283508,75277271:75277505:75279554:75279750:75280665:75280785,	75279555	75279750	75279649	75279649	Nonsense_Mutation	G	A	p.Q862X
THYM	TCGA-X7-A8M0-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670319	95670319	Nonsense_Mutation	G	T	p.S456X
THYM	TCGA-X7-A8M0-01	PLAC9	ENST00000372263.3	chr10	81892476:81892582:81901837:81901935:81903978:81904099,	81901838	81901935	81901933	81901933	Nonsense_Mutation	G	T	p.E54X
THYM	TCGA-4V-A9QX-01	SEC62	ENST00000480708.1	chr3	169706027:169706147:169710381:169710889:169711442:169711619,	169710382	169710889	169710756	169710756	Nonsense_Mutation	G	T	p.E369X
THYM	TCGA-4V-A9QX-01	ZNF720	ENST00000534277.1	chr16	31724626:31724756:31733946:31734073:31734578:31734674,31724593:31724769:31733946:31734073:31734578:31734674,	31733947	31734073	31733992	31733992	Nonsense_Mutation	G	T	p.E17X
THYM	TCGA-3S-A8YW-01	ARPC1A	ENST00000262942.5,ENST00000432786.1,ENST00000432884.2,ENST00000441989.2	chr7	98946515:98946582:98951531:98951744:98955962:98956026,	98951532	98951744	98951620	98951620	Nonsense_Mutation	G	T	p.E197X
THYM	TCGA-3S-A8YW-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117086977	117086977	Nonsense_Mutation	G	T	p.S107X
THYM	TCGA-3S-A8YW-01	COG5	ENST00000393603.2,ENST00000347053.3,ENST00000297135.3	chr7	106924015:106924177:106938586:106938791:106964884:106964966,	106938587	106938791	106938703	106938703	Nonsense_Mutation	G	T	p.Y430X
THYM	TCGA-XM-A8RF-01	SND1	ENST00000468166.1,ENST00000465900.1,ENST00000354725.3	chr7	127361340:127361454:127447537:127447627:127484376:127484477,	127447538	127447627	127447586	127447586	Nonsense_Mutation	G	T	p.E401X
THYM	TCGA-XM-A8RF-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3149142:3149199:3151691:3151891:3154944:3155086,	3151692	3151891	3151868	3151868	Nonsense_Mutation	C	T	p.W556X
THYM	TCGA-XM-A8RF-01	TINAG	ENST00000259782.4,ENST00000486436.1,ENST00000370864.3,ENST00000370869.3	chr6	54173394:54173703:54185376:54185440:54186094:54186184,	54185377	54185440	54185403	54185403	Nonsense_Mutation	G	T	p.E128X
THYM	TCGA-4V-A9QM-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96064238:96064402:96066183:96066445:96068337:96068456,	96066184	96066445	96066442	96066442	Nonsense_Mutation	C	T	p.R1961*
THYM	TCGA-XM-A8RH-01	CSF3	ENST00000225474.2	chr17	38171943:38172098:38172485:38172593:38172737:38172884,38171943:38172107:38172485:38172593:38172737:38172884,	38172486	38172593	38172588	38172588	Nonsense_Mutation	C	T	p.Q96*
THYM	TCGA-X7-A8M1-01	SWAP70	ENST00000534562.1,ENST00000524817.1,ENST00000447399.2,ENST00000318950.6	chr11	9754075:9754257:9759759:9759867:9761727:9761889,	9759760	9759867	9759823	9759823	Nonsense_Mutation	G	T	p.E382*
THYM	TCGA-XU-A936-01	ALOX12	ENST00000251535.6	chr17	6909180:6909346:6909804:6909926:6913065:6913166,	6909805	6909926	6909880	6909880	Nonsense_Mutation	G	A	p.W498*
THYM	TCGA-ZB-A966-01	UTP23	ENST00000357148.3	chr8	117778810:117779030:117782430:117782605:117791721:117791825,117778810:117779030:117782430:117782605:117798741:117798816,	117782431	117782605	117782507	117782507	Nonsense_Mutation	C	T	p.R89*
THYM	TCGA-ZB-A966-01	FMN1	ENST00000559047.1	chr15	33300214:33300276:33357157:33357275:33380999:33381175,	33357158	33357275	33357216	33357216	Nonsense_Mutation	C	T	p.W478*
THYM	TCGA-ZB-A966-01	DNAJC7	ENST00000588641.1	chr17	40142371:40142400:40146887:40146962:40148328:40148442,40142371:40142400:40146887:40146962:40149132:40149257,	40146888	40146962	40146920	40146920	Nonsense_Mutation	C	A	p.E150*
THYM	TCGA-ZB-A966-01	DNAJC7	ENST00000588814.1	chr17	40142371:40142400:40146887:40147001:40148328:40148442,	40146888	40147001	40146920	40146920	Nonsense_Mutation	C	A	p.E150*
THYM	TCGA-ZB-A966-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143092794	143092794	Nonsense_Mutation	G	A	p.R1028*
THYM	TCGA-ZB-A966-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30492633	30492633	Nonsense_Mutation	G	A	p.R134*
THYM	TCGA-ZB-A962-01	SLC9A5	ENST00000563723.1,ENST00000564812.1,ENST00000299798.11,ENST00000564704.1,ENST00000566626.1	chr16	67298254:67298425:67298942:67299009:67299990:67300128,	67298943	67299009	67298985	67298985	Nonsense_Mutation	C	T	p.R686*
THYM	TCGA-XM-AAZ3-01	GRAMD1C	ENST00000440446.2,ENST00000472026.1,ENST00000452134.2,ENST00000358160.4,ENST00000479212.1	chr3	113656932:113656990:113658732:113658843:113659086:113659192,	113658733	113658843	113658830	113658830	Nonsense_Mutation	G	T	p.E597*
THYM	TCGA-3S-AAYX-01	AGAP1	ENST00000409538.1,ENST00000428334.2,ENST00000336665.5,ENST00000304032.8,ENST00000453371.1	chr2	236957702:236957925:237028835:237029091:237032562:237033319,	237028836	237029091	237029017	237029017	Nonsense_Mutation	G	T	p.E978*
THYM	TCGA-ZB-A96V-01	RTTN	ENST00000255674.6,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67727085:67727278:67733064:67733158:67741141:67741230,	67733065	67733158	67733068	67733068	Nonsense_Mutation	G	A	p.Q1582*
THYM	TCGA-ZB-A96V-01	CHEK2	ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000402731.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1	chr22	29085122:29085203:29090019:29090105:29091114:29091197,	29090020	29090105	29090049	29090049	Nonsense_Mutation	C	A	p.E257*
THYM	TCGA-XU-A92V-01	RARB	ENST00000462272.1,ENST00000458646.1,ENST00000437042.2,ENST00000330688.4,ENST00000404969.1,ENST00000480001.1,ENST00000383772.4	chr3	25542672:25542814:25611248:25611409:25622036:25622213,	25611249	25611409	25611353	25611353	Nonsense_Mutation	C	T	p.R185*
THYM	TCGA-ZB-A96E-01	PLEKHG4B	ENST00000283426.6	chr5	173011:173182:174032:174213:181628:181790,	174033	174213	174164	174164	Nonsense_Mutation	G	A	p.W1095*
THYM	TCGA-XM-AAZ1-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000396085.1,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	19970236:19970626:20005670:20005793:20057504:20057643,	20005671	20005793	20005780	20005780	Nonsense_Mutation	G	T	p.G919*
THYM	TCGA-5K-AAAP-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34791033:34791125:34801993:34802183:34802497:34802638,	34801994	34802183	34802010	34802010	Nonsense_Mutation	G	T	p.E119*
THYM	TCGA-5K-AAAP-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90856011	90856011	Nonsense_Mutation	C	T	p.Q394*
THYM	TCGA-3G-AB0T-01	ANAPC5	ENST00000441917.2,ENST00000535482.1,ENST00000344395.4,ENST00000541887.1,ENST00000544314.1,ENST00000261819.3,ENST00000535641.1	chr12	121747503:121747666:121756079:121756227:121756303:121756411,	121756080	121756227	121756196	121756196	Nonsense_Mutation	G	A	p.R593*
THYM	TCGA-3G-AB0T-01	ANAPC5	ENST00000539079.1	chr12	121747503:121747666:121756079:121756207:121756303:121756411,	121756080	121756207	121756196	121756196	Nonsense_Mutation	G	A	p.R593*
THYM	TCGA-ZB-A96D-01	RBMS3	ENST00000396583.3,ENST00000383767.2,ENST00000456853.1,ENST00000273139.9,ENST00000434693.2,ENST00000452462.1	chr3	29938869:29938966:29941195:29941246:29977576:29977687,	29941196	29941246	29941238	29941238	Nonsense_Mutation	C	T	p.Q310*
THYM	TCGA-ZB-A96D-01	KCNT2	ENST00000294725.9,ENST00000609185.1,ENST00000367433.5,ENST00000451324.2,ENST00000367431.4	chr1	196436832:196436916:196438123:196438198:196448308:196448368,	196438124	196438198	196438174	196438174	Nonsense_Mutation	G	A	p.R137*
THYM	TCGA-5V-A9RR-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25777898:25777982:25780697:25780825:25783863:25784040,	25780698	25780825	25780763	25780763	Nonsense_Mutation	C	T	p.W840*
THYM	TCGA-ZB-A969-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699274	30699274	Nonsense_Mutation	G	T	p.E377*
THYM	TCGA-4X-A9F9-01	EPN3	ENST00000537145.1,ENST00000574464.1,ENST00000512379.1,ENST00000268933.3	chr17	48616547:48616676:48618153:48618423:48618589:48618694,48617607:48617695:48618153:48618423:48618589:48618694,	48618154	48618423	48618169	48618169	Nonsense_Mutation	C	T	p.Q220*
THYM	TCGA-ZB-A961-01	CD276	ENST00000560928.1,ENST00000567582.1	chr15	73991980:73992059:73994720:73994934:73995112:73995162,	73994721	73994934	73994736	73994736	Nonsense_Mutation	C	T	p.Q74*
THYM	TCGA-ZB-A961-01	CD276	ENST00000318443.5,ENST00000561260.1,ENST00000561213.1,ENST00000560786.2	chr15	73991980:73992059:73994595:73994934:73995112:73995162,	73994596	73994934	73994736	73994736	Nonsense_Mutation	C	T	p.Q74*
THYM	TCGA-XU-A92T-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216279559:216279681:216283964:216284108:216285395:216285524,	216283965	216284108	216283987	216283987	Nonsense_Mutation	G	T	p.C599*
THYM	TCGA-4V-A9QL-01	STK33	ENST00000396672.1,ENST00000315204.1,ENST00000396673.1,ENST00000534493.1,ENST00000447869.1,ENST00000526517.1,ENST00000358872.3,ENST00000486305.2,ENST00000444064.2	chr11	8457573:8457686:8462224:8462300:8474368:8474453,	8462225	8462300	8462251	8462251	Nonsense_Mutation	C	T	p.W307*
THYM	TCGA-5U-AB0D-01	CHST10	ENST00000421474.1,ENST00000264249.3,ENST00000542617.1,ENST00000420858.1,ENST00000409701.1,ENST00000448989.1,ENST00000409046.1	chr2	101014541:101014604:101019025:101019117:101023037:101023169,	101019026	101019117	101019055	101019055	Nonsense_Mutation	C	A	p.E55*
THYM	TCGA-5U-AB0D-01	ACP2	ENST00000256997.3,ENST00000537863.1,ENST00000529663.1,ENST00000531547.1,ENST00000531004.1,ENST00000533929.1,ENST00000527256.1,ENST00000534448.1	chr11	47264789:47264872:47266285:47266418:47267232:47267385,47264789:47264872:47266285:47266418:47266855:47266945,	47266286	47266418	47266389	47266389	Nonsense_Mutation	C	T	p.W223*
THYM	TCGA-XU-A933-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357576	50357576	Nonsense_Mutation	A	C	p.Y455*
THYM	TCGA-XU-A933-01	ALPK3	ENST00000258888.5	chr15	85403267:85403303:85405865:85406146:85406782:85406871,	85405866	85406146	85405949	85405949	Nonsense_Mutation	C	T	p.R1607*
THYM	TCGA-5U-AB0D-01	CHST10	ENST00000421474.1,ENST00000264249.3,ENST00000542617.1,ENST00000420858.1,ENST00000409701.1,ENST00000448989.1,ENST00000409046.1	chr2	101014541:101014604:101019025:101019117:101023037:101023169,	101019026	101019117	101019055	101019055	Nonsense_Mutation	C	A	p.E103*
THYM	TCGA-XU-A936-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117205	72117205	Nonsense_Mutation	C	T	p.R658*
THYM	TCGA-XU-A936-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117205	72117205	Nonsense_Mutation	C	T	p.R658*
THYM	TCGA-YT-A95G-01	EPG5	ENST00000587974.1,ENST00000282041.5	chr18	43496402:43496547:43497643:43497784:43502306:43502566,	43497644	43497784	43497645	43497645	Nonsense_Mutation	G	A	p.Q1080*
THYM	TCGA-ZB-A96V-01	CHEK2	ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000402731.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1	chr22	29085122:29085203:29090019:29090105:29091114:29091197,	29090020	29090105	29090049	29090049	Nonsense_Mutation	C	A	p.E521*
UCEC	TCGA-A5-A0G5-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836101	35836101	Nonsense_Mutation	C	T	p.Q352*
UCEC	TCGA-A5-A0G5-01	SLC26A10	ENST00000440686.1,ENST00000320442.4,ENST00000474359.2,ENST00000379218.2	chr12	58016341:58016424:58016569:58016717:58016806:58016920,	58016570	58016717	58016693	58016693	Nonsense_Mutation	T	G	p.Y305*
UCEC	TCGA-A5-A0G9-01	PTPRU	ENST00000460170.2	chr1	29647196:29647337:29649882:29650008:29650148:29650300,	29649883	29650008	29649897	29649897	Nonsense_Mutation	C	A	p.Y1291*
UCEC	TCGA-A5-A0G9-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000441451.1,ENST00000406567.3	chr2	27354307:27354376:27354539:27354699:27354877:27354950,	27354540	27354699	27354697	27354697	Nonsense_Mutation	G	T	p.C334*
UCEC	TCGA-A5-A0G9-01	PREB	ENST00000456259.1	chr2	27354307:27354376:27354541:27354699:27354877:27354950,	27354542	27354699	27354697	27354697	Nonsense_Mutation	G	T	p.C334*
UCEC	TCGA-A5-A0G9-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184932195	184932195	Nonsense_Mutation	T	A	p.L735*
UCEC	TCGA-A5-A0G9-01	RUNX2	ENST00000371436.6,ENST00000541979.1,ENST00000371432.3	chr6	45459677:45459851:45479982:45480144:45514563:45514946,	45479983	45480144	45480041	45480041	Nonsense_Mutation	C	A	p.Y306*
UCEC	TCGA-A5-A0G9-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000305960.9,ENST00000543237.1	chr14	67576856:67576976:67578577:67578636:67579734:67579888,	67578578	67578636	67578599	67578599	Nonsense_Mutation	C	T	p.R446*
UCEC	TCGA-A5-A0G9-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298265	34298265	Nonsense_Mutation	G	T	p.E1002*
UCEC	TCGA-A5-A0G9-01	LGALS4	ENST00000596628.1,ENST00000595278.1,ENST00000597153.1,ENST00000600070.1,ENST00000307751.4	chr19	39294508:39294535:39297100:39297235:39299383:39299435,	39297101	39297235	39297166	39297166	Nonsense_Mutation	G	A	p.Q137*
UCEC	TCGA-A5-A0G9-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10632778:10632898:10633115:10633246:10637045:10637106,	10633116	10633246	10633170	10633170	Nonsense_Mutation	C	A	p.E278*
UCEC	TCGA-A5-A0G9-01	ITGB1BP2	ENST00000538820.1,ENST00000373829.3,ENST00000483897.1	chrX	70523310:70523366:70523476:70523547:70523661:70523761,	70523477	70523547	70523534	70523534	Nonsense_Mutation	C	T	p.R176*
UCEC	TCGA-A5-A0GA-01	IVNS1ABP	ENST00000392007.3,ENST00000367498.3,ENST00000459929.1,ENST00000468217.1,ENST00000475046.1,ENST00000480769.1,ENST00000494880.1	chr1	185269228:185269262:185269348:185269475:185269568:185269690,	185269349	185269475	185269421	185269421	Nonsense_Mutation	C	A	p.G433*
UCEC	TCGA-A5-A0GA-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235894331:235894477:235896802:235896991:235897129:235897206,	235896803	235896991	235896835	235896835	Nonsense_Mutation	C	T	p.W2923*
UCEC	TCGA-A5-A0GA-01	GOSR1	ENST00000427274.2,ENST00000467635.2,ENST00000451249.2	chr17	28804444:28804482:28808160:28808275:28811231:28811319,	28808161	28808275	28808256	28808256	Nonsense_Mutation	C	T	p.R43*
UCEC	TCGA-A5-A0GA-01	GOSR1	ENST00000581721.1,ENST00000491489.2	chr17	28804444:28804482:28808160:28808281:28811231:28811319,	28808161	28808281	28808256	28808256	Nonsense_Mutation	C	T	p.R43*
UCEC	TCGA-A5-A0GB-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056217	27056217	Nonsense_Mutation	C	T	p.Q405*
UCEC	TCGA-A5-A0GB-01	SREK1IP1	ENST00000495198.2,ENST00000513458.4	chr5	64023933:64024006:64036883:64037027:64050141:64050189,	64036884	64037027	64036992	64036992	Nonsense_Mutation	G	A	p.R33*
UCEC	TCGA-A5-A0GB-01	ARRDC3	ENST00000508948.1,ENST00000265138.3,ENST00000503192.1	chr5	90671343:90671430:90672437:90672585:90674510:90674592,	90672438	90672585	90672560	90672560	Nonsense_Mutation	G	A	p.R130*
UCEC	TCGA-A5-A0GB-01	SCML4	ENST00000459992.1,ENST00000369022.2,ENST00000426221.1,ENST00000440927.1,ENST00000369021.3,ENST00000369020.3,ENST00000463507.1	chr6	108066152:108066347:108067892:108068093:108070887:108071017,	108067893	108068093	108067947	108067947	Nonsense_Mutation	G	A	p.Q145*
UCEC	TCGA-A5-A0GB-01	ADAT2	ENST00000606514.1,ENST00000237283.8	chr6	143749748:143749821:143753641:143753748:143754967:143755118,	143753642	143753748	143753713	143753713	Nonsense_Mutation	G	A	p.R130*
UCEC	TCGA-A5-A0GB-01	TBRG4	ENST00000361278.3,ENST00000395655.4	chr7	45141945:45142090:45142931:45143042:45145039:45145077,	45142932	45143042	45143024	45143024	Nonsense_Mutation	G	A	p.Q373*
UCEC	TCGA-A5-A0GB-01	PKHD1L1	ENST00000378402.5	chr8	110437313:110437461:110439230:110439385:110441568:110441691,	110439231	110439385	110439284	110439284	Nonsense_Mutation	G	T	p.E967*
UCEC	TCGA-A5-A0GB-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	121059788:121059876:121060472:121060589:121061414:121061515,	121060473	121060589	121060496	121060496	Nonsense_Mutation	G	T	p.G2092*
UCEC	TCGA-A5-A0GH-01	MCOLN3	ENST00000341115.4	chr1	85498554:85498639:85499780:85499934:85506692:85506860,85498554:85498639:85499780:85499934:85510815:85511045,	85499781	85499934	85499838	85499838	Nonsense_Mutation	G	A	p.R165*
UCEC	TCGA-A5-A0GH-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5789627	5789627	Nonsense_Mutation	C	T	p.R1415*
UCEC	TCGA-A5-A0GH-01	TMEM231	ENST00000562410.1,ENST00000568377.1,ENST00000569294.1,ENST00000258173.6	chr16	75576499:75576581:75579249:75579393:75579723:75579852,	75579250	75579393	75579258	75579258	Nonsense_Mutation	G	A	p.R221*
UCEC	TCGA-A5-A0GH-01	GRIK1	ENST00000399909.1,ENST00000399914.1,ENST00000389125.3,ENST00000327783.4,ENST00000399907.1,ENST00000389124.2,ENST00000309434.7,ENST00000399913.1,ENST00000535441.1	chr21	30949283:30949501:30953744:30953863:30959685:30959909,	30953745	30953863	30953851	30953851	Nonsense_Mutation	G	C	p.Y602*
UCEC	TCGA-A5-A0GH-01	COL18A1	ENST00000359759.4,ENST00000355480.5,ENST00000400337.2	chr21	46906774:46906906:46907360:46907423:46908331:46908358,	46907361	46907423	46907403	46907403	Nonsense_Mutation	C	T	p.R806*
UCEC	TCGA-A5-A0GJ-01	GARS	ENST00000389266.3,ENST00000478124.1	chr7	30649200:30649346:30651711:30651861:30655511:30655674,	30651712	30651861	30651839	30651839	Nonsense_Mutation	C	T	p.R337*
UCEC	TCGA-A5-A0GM-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645291	67645291	Nonsense_Mutation	C	T	p.Q186*
UCEC	TCGA-A5-A0GQ-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000342992.6,ENST00000460472.2	chr2	179393000:179393154:179393254:179393946:179394686:179394843,	179393255	179393946	179393347	179393347	Nonsense_Mutation	G	A	p.Q33143*
UCEC	TCGA-A5-A0GQ-01	UBE2E2	ENST00000452894.1,ENST00000335798.4	chr3	23244652:23244753:23250182:23250366:23258752:23258803,	23250183	23250366	23250200	23250200	Nonsense_Mutation	G	T	p.E4*
UCEC	TCGA-A5-A0GQ-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000320356.2,ENST00000541220.1,ENST00000483967.1	chr7	148513775:148513870:148514313:148514483:148514968:148515209,	148514314	148514483	148514368	148514368	Nonsense_Mutation	G	C	p.Y447*
UCEC	TCGA-A5-A0GV-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155367	106155367	Nonsense_Mutation	C	T	p.Q111*
UCEC	TCGA-A5-A0GW-01	ARNT	ENST00000515192.1,ENST00000354396.2,ENST00000505755.1,ENST00000358595.5	chr1	150785647:150785814:150786552:150786715:150788734:150788876,	150786553	150786715	150786565	150786565	Nonsense_Mutation	C	A	p.G701*
UCEC	TCGA-A5-A0GW-01	DHRS1	ENST00000559483.1,ENST00000288111.7,ENST00000561273.1,ENST00000558340.1,ENST00000396813.1	chr14	24765714:24765794:24765943:24766087:24768162:24768336,	24765944	24766087	24766024	24766024	Nonsense_Mutation	G	A	p.R72*
UCEC	TCGA-A5-A0R6-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367251.3,ENST00000367255.5,ENST00000367256.5,ENST00000367257.4,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152501270:152501429:152510386:152510542:152522958:152523084,	152510387	152510542	152510496	152510496	Nonsense_Mutation	A	T	p.L7731*
UCEC	TCGA-A5-A0R7-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195511852	195511852	Nonsense_Mutation	G	T	p.S2200*
UCEC	TCGA-A5-A0R7-01	SSR1	ENST00000462112.1,ENST00000479365.1,ENST00000397511.2,ENST00000244763.4,ENST00000474597.1	chr6	7298979:7299056:7301542:7301805:7303782:7303866,	7301543	7301805	7301618	7301618	Nonsense_Mutation	G	T	p.Y156*
UCEC	TCGA-A5-A0VO-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43173000:43173161:43173744:43173973:43174058:43174248,	43173745	43173973	43173902	43173902	Nonsense_Mutation	C	T	p.Q1651*
UCEC	TCGA-A5-A0VO-01	ZMYM2	ENST00000382871.2,ENST00000382881.3,ENST00000382874.2,ENST00000382869.3	chr13	20567965:20568059:20576989:20577275:20579213:20579379,	20576990	20577275	20577068	20577068	Nonsense_Mutation	C	A	p.S309*
UCEC	TCGA-A5-A0VQ-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1	chr3	138413627:138413749:138417748:138417937:138423284:138423335,	138417749	138417937	138417835	138417835	Nonsense_Mutation	G	A	p.R562*
UCEC	TCGA-A5-A0VQ-01	NR3C1	ENST00000503201.1	chr5	142693566:142693733:142779220:142780417:142783940:142784035,	142779221	142780417	142780089	142780089	Nonsense_Mutation	G	A	p.Q106*
UCEC	TCGA-A5-A0VQ-01	EBAG9	ENST00000527709.1,ENST00000529502.1,ENST00000531677.1,ENST00000529931.1,ENST00000337573.5,ENST00000395785.2,ENST00000530629.1	chr8	110566093:110566172:110566957:110567116:110569163:110569256,	110566958	110567116	110567111	110567111	Nonsense_Mutation	C	T	p.Q106*
UCEC	TCGA-A5-A0VQ-01	PHB	ENST00000504124.1,ENST00000434917.2,ENST00000511832.1,ENST00000300408.3,ENST00000512041.2,ENST00000393345.4,ENST00000446735.1,ENST00000419140.2	chr17	47486810:47486835:47489039:47489201:47490538:47490615,	47489040	47489201	47489169	47489169	Nonsense_Mutation	G	A	p.R41*
UCEC	TCGA-AP-A052-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351187	89351187	Nonsense_Mutation	G	T	p.S588*
UCEC	TCGA-AP-A05A-01	ATAD2B	ENST00000238789.5,ENST00000381024.4	chr2	24021007:24021193:24033185:24033372:24042616:24042725,	24033186	24033372	24033196	24033196	Nonsense_Mutation	G	C	p.S815*
UCEC	TCGA-AP-A05A-01	SLMAP	ENST00000428312.1	chr3	57850312:57850443:57857362:57857425:57875767:57875827,57850968:57851019:57857362:57857425:57875767:57875827,57850542:57850584:57857362:57857425:57875767:57875827,	57857363	57857425	57857375	57857375	Nonsense_Mutation	C	G	p.S400*
UCEC	TCGA-AP-A05A-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815532	82815532	Nonsense_Mutation	T	A	p.Y469*
UCEC	TCGA-AP-A05D-01	TUSC3	ENST00000510836.1	chr8	15531271:15531345:15601046:15601121:15605883:15605974,15531271:15531345:15601046:15601121:15621711:15621927,	15601047	15601121	15601109	15601109	Nonsense_Mutation	G	T	p.G309*
UCEC	TCGA-AP-A05D-01	TUSC3	ENST00000508446.1	chr8	15531271:15531345:15600954:15601121:15621711:15621927,	15600955	15601121	15601109	15601109	Nonsense_Mutation	G	T	p.G309*
UCEC	TCGA-AP-A05N-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000436908.1,ENST00000455112.2,ENST00000448002.2	chr7	102495223:102495307:102517913:102518040:102518777:102518897,	102517914	102518040	102518012	102518012	Nonsense_Mutation	G	A	p.R513*
UCEC	TCGA-AP-A05N-01	XPOT	ENST00000332707.5	chr12	64833023:64833095:64838854:64838911:64841884:64844907,	64838855	64838911	64838864	64838864	Nonsense_Mutation	C	T	p.Q939*
UCEC	TCGA-AP-A05N-01	AP1G2	ENST00000556741.1,ENST00000397120.3,ENST00000308724.5,ENST00000554977.1,ENST00000535852.2,ENST00000460049.2	chr14	24032827:24032847:24032924:24033065:24033254:24033294,	24032925	24033065	24033004	24033004	Nonsense_Mutation	C	A	p.E385*
UCEC	TCGA-AP-A05N-01	AP1G2	ENST00000555974.1	chr14	24032681:24032711:24032792:24033065:24033254:24033294,	24032793	24033065	24033004	24033004	Nonsense_Mutation	C	A	p.E385*
UCEC	TCGA-AP-A05N-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60587191:60587347:60608950:60609151:60612341:60612504,	60608951	60609151	60609129	60609129	Nonsense_Mutation	C	T	p.R1047*
UCEC	TCGA-AP-A05P-01	GRK4	ENST00000504933.1,ENST00000398051.4,ENST00000345167.6,ENST00000398052.4,ENST00000505271.1	chr4	3024140:3024178:3029638:3029728:3030927:3031136,	3029639	3029728	3029698	3029698	Nonsense_Mutation	C	T	p.R344*
UCEC	TCGA-AP-A05P-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3677232:3677535:3677731:3677989:3678444:3678780,	3677732	3677989	3677876	3677876	Nonsense_Mutation	G	A	p.R746*
UCEC	TCGA-AP-A0L8-01	LMBRD1	ENST00000472827.1,ENST00000370570.1,ENST00000370577.3	chr6	70407454:70407533:70408934:70409084:70410656:70410694,	70408935	70409084	70408944	70408944	Nonsense_Mutation	G	C	p.Y443*
UCEC	TCGA-AP-A0L8-01	UPF3B	ENST00000345865.2,ENST00000276201.2,ENST00000478840.1	chrX	118975697:118975741:118977153:118977264:118979160:118979217,	118977154	118977264	118977241	118977241	Nonsense_Mutation	C	A	p.E165*
UCEC	TCGA-AP-A0LD-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000564288.1	chr1	39838150:39838268:39844132:39844195:39844874:39845116,	39844133	39844195	39844153	39844153	Nonsense_Mutation	G	T	p.G2852*
UCEC	TCGA-AP-A0LD-01	EPRS	ENST00000366923.3	chr1	220146579:220146740:220151887:220152061:220152759:220152957,	220151888	220152061	220151974	220151974	Nonsense_Mutation	G	A	p.R1333*
UCEC	TCGA-AP-A0LD-01	KCTD18	ENST00000478816.1,ENST00000447556.1,ENST00000409157.1	chr2	201369492:201369682:201371579:201371814:201374733:201374791,	201371580	201371814	201371697	201371697	Nonsense_Mutation	G	A	p.R15*
UCEC	TCGA-AP-A0LD-01	TES	ENST00000358204.4,ENST00000393481.2,ENST00000393484.2	chr7	115890502:115890550:115891813:115892029:115892371:115892530,	115891814	115892029	115891886	115891886	Nonsense_Mutation	A	T	p.K259*
UCEC	TCGA-AP-A0LD-01	LIG3	ENST00000378526.4,ENST00000593099.1,ENST00000262327.5	chr17	33326800:33326875:33328275:33328422:33328927:33329123,	33328276	33328422	33328351	33328351	Nonsense_Mutation	C	T	p.R803*
UCEC	TCGA-AP-A0LD-01	TRPM4	ENST00000427978.2,ENST00000596338.1,ENST00000252826.5	chr19	49669297:49669472:49671173:49671354:49671516:49671594,	49671174	49671354	49671309	49671309	Nonsense_Mutation	C	T	p.Q135*
UCEC	TCGA-AP-A0LE-01	WDTC1	ENST00000491239.2	chr1	27627716:27627952:27630111:27631684:27632676:27632941,	27630112	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q587*
UCEC	TCGA-AP-A0LE-01	WDTC1	ENST00000361771.3,ENST00000319394.3	chr1	27630111:27630286:27631491:27631684:27632676:27632763,	27631492	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q587*
UCEC	TCGA-AP-A0LE-01	WDTC1	ENST00000447062.2	chr1	27630111:27630286:27631549:27631684:27632676:27632763,	27631550	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q587*
UCEC	TCGA-AP-A0LE-01	CHD1L	ENST00000369258.4,ENST00000492728.1,ENST00000467213.1	chr1	146714395:146714480:146724277:146724390:146726524:146726631,	146724278	146724390	146724358	146724358	Nonsense_Mutation	G	T	p.G70*
UCEC	TCGA-AP-A0LE-01	USP34	ENST00000411912.1,ENST00000490527.1,ENST00000472706.1,ENST00000398571.2	chr2	61441761:61441829:61447444:61447592:61448636:61448736,	61447445	61447592	61447508	61447508	Nonsense_Mutation	G	A	p.Q2662*
UCEC	TCGA-AP-A0LE-01	METTL8	ENST00000375258.4,ENST00000453846.1,ENST00000442778.1,ENST00000442541.1,ENST00000392599.2,ENST00000392604.2	chr2	172196050:172196064:172216931:172217023:172291183:172291290,172196050:172196064:172216931:172217023:172271112:172271236,172196050:172196064:172216931:172217023:172248552:172248707,	172216932	172217023	172216953	172216953	Nonsense_Mutation	G	A	p.R72*
UCEC	TCGA-AP-A0LE-01	WDR19	ENST00000512095.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3	chr4	39219602:39219725:39226503:39226653:39229829:39229977,	39226504	39226653	39226558	39226558	Nonsense_Mutation	C	T	p.R512*
UCEC	TCGA-AP-A0LE-01	IRF2	ENST00000393593.3	chr4	185311856:185311903:185320068:185320233:185329311:185329429,	185320069	185320233	185320225	185320225	Nonsense_Mutation	G	A	p.Q180*
UCEC	TCGA-AP-A0LE-01	AHI1	ENST00000265602.6,ENST00000417892.2,ENST00000475846.2,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2,ENST00000367799.2	chr6	135748304:135748445:135749766:135749897:135751019:135751138,	135749767	135749897	135749884	135749884	Nonsense_Mutation	T	A	p.K836*
UCEC	TCGA-AP-A0LE-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-AP-A0LE-01	MPPED2	ENST00000448418.2,ENST00000358117.5,ENST00000526437.1	chr11	30435774:30435888:30439064:30439180:30516842:30517068,	30439065	30439180	30439137	30439137	Nonsense_Mutation	G	A	p.Q194*
UCEC	TCGA-AP-A0LE-01	CRLF3	ENST00000324238.6	chr17	29124328:29124416:29130918:29131126:29151540:29151689,	29130919	29131126	29131039	29131039	Nonsense_Mutation	G	A	p.R73*
UCEC	TCGA-AP-A0LE-01	PACSIN2	ENST00000337959.4,ENST00000402229.1,ENST00000263246.3,ENST00000407585.1,ENST00000403744.3	chr22	43275053:43275175:43278189:43278310:43280391:43280567,	43278190	43278310	43278237	43278237	Nonsense_Mutation	G	A	p.R287*
UCEC	TCGA-AP-A0LF-01	PACRG	ENST00000366888.2,ENST00000366889.2,ENST00000541974.1	chr6	163483317:163483353:163510290:163510440:163735858:163736174,	163510291	163510440	163510311	163510311	Nonsense_Mutation	C	T	p.R162*
UCEC	TCGA-AP-A0LF-01	AMHR2	ENST00000379791.3,ENST00000550839.1,ENST00000550311.1,ENST00000257863.4	chr12	53819602:53819703:53822679:53822794:53823236:53823409,	53822680	53822794	53822697	53822697	Nonsense_Mutation	C	G	p.Y290*
UCEC	TCGA-AP-A0LG-01	DGKG	ENST00000544847.1,ENST00000382164.4,ENST00000344484.4,ENST00000480809.1,ENST00000265022.3	chr3	185993335:185993453:185997639:185997762:185998458:185998503,	185997640	185997762	185997705	185997705	Nonsense_Mutation	G	A	p.Q243*
UCEC	TCGA-AP-A0LG-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87680094:87680226:87683879:87684343:87685745:87685877,	87683880	87684343	87684281	87684281	Nonsense_Mutation	G	T	p.G1319*
UCEC	TCGA-AP-A0LG-01	YTHDC2	ENST00000515883.1,ENST00000161863.4,ENST00000503857.1	chr5	112874770:112874878:112876664:112876813:112878064:112878200,	112876665	112876813	112876808	112876808	Nonsense_Mutation	C	T	p.Q452*
UCEC	TCGA-AP-A0LG-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906833	103906833	Nonsense_Mutation	C	T	p.Q1362*
UCEC	TCGA-AP-A0LG-01	AARS	ENST00000261772.8,ENST00000564359.1,ENST00000565361.2	chr16	70292938:70293089:70294946:70295060:70296248:70296264,	70294947	70295060	70295027	70295027	Nonsense_Mutation	G	A	p.R569*
UCEC	TCGA-AP-A0LG-01	PHKA2	ENST00000379942.4	chrX	18969221:18969390:18970611:18970659:18972371:18972530,	18970612	18970659	18970629	18970629	Nonsense_Mutation	G	A	p.Q90*
UCEC	TCGA-AP-A0LH-01	ADAMTS17	ENST00000378898.4,ENST00000268070.4	chr15	100695384:100695525:100739522:100739628:100794340:100794384,	100739523	100739628	100739603	100739603	Nonsense_Mutation	G	T	p.C367*
UCEC	TCGA-AP-A0LI-01	TYSND1	ENST00000287078.6	chr10	71902520:71902609:71903597:71903728:71905176:71906342,	71903598	71903728	71903691	71903691	Nonsense_Mutation	G	A	p.Q402*
UCEC	TCGA-AP-A0LJ-01	IFT43	ENST00000554026.1,ENST00000542766.1,ENST00000555370.1,ENST00000555305.1,ENST00000556742.1,ENST00000314067.6	chr14	76455227:76455320:76488669:76488737:76524984:76525017,	76488670	76488737	76488697	76488697	Nonsense_Mutation	C	T	p.R59*
UCEC	TCGA-AP-A0LL-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000523471.1,ENST00000544260.1,ENST00000381869.3,ENST00000262102.6,ENST00000381861.3,ENST00000517413.1	chr8	17504512:17504588:17507354:17507471:17510694:17510787,	17507355	17507471	17507462	17507462	Nonsense_Mutation	G	A	p.Q1132*
UCEC	TCGA-AP-A0LN-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61835222	61835222	Nonsense_Mutation	G	T	p.S1806*
UCEC	TCGA-AP-A0LO-01	APOBEC3B	ENST00000407298.3,ENST00000333467.3,ENST00000335760.5	chr22	39387411:39387631:39388038:39388154:39388435:39388551,	39388039	39388154	39388070	39388070	Nonsense_Mutation	C	A	p.Y350*
UCEC	TCGA-AP-A0LP-01	RBMS1	ENST00000409075.1,ENST00000490637.1,ENST00000477965.1,ENST00000409972.1,ENST00000348849.3,ENST00000392753.3,ENST00000409289.2,ENST00000474820.1	chr2	161132140:161132225:161133813:161133894:161135058:161135169,	161133814	161133894	161133852	161133852	Nonsense_Mutation	G	A	p.Q369*
UCEC	TCGA-AP-A0LP-01	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2,ENST00000577103.1	chr16	16306041:16306103:16308180:16308306:16313410:16313539,	16308181	16308306	16308268	16308268	Nonsense_Mutation	G	C	p.Y171*
UCEC	TCGA-AP-A0LT-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680349	6680349	Nonsense_Mutation	C	T	p.R210*
UCEC	TCGA-AP-A0LT-01	CTRC	ENST00000375949.4	chr1	15769913:15770050:15771100:15771246:15772091:15772244,	15771101	15771246	15771139	15771139	Nonsense_Mutation	C	T	p.Q178*
UCEC	TCGA-AP-A0LT-01	PHACTR4	ENST00000493669.1,ENST00000463428.1,ENST00000373836.3,ENST00000373839.3	chr1	28785595:28785769:28786722:28786803:28792195:28792360,	28786723	28786803	28786746	28786746	Nonsense_Mutation	C	T	p.R82*
UCEC	TCGA-AP-A0LT-01	HK1	ENST00000494253.1,ENST00000360289.2,ENST00000404387.2,ENST00000448642.2,ENST00000298649.3,ENST00000359426.6	chr10	71129196:71129380:71136689:71136845:71139617:71139851,	71136690	71136845	71136805	71136805	Nonsense_Mutation	C	T	p.R331*
UCEC	TCGA-AP-A0LT-01	DCAF5	ENST00000554215.1,ENST00000556111.1,ENST00000553293.1,ENST00000557386.1,ENST00000341516.5,ENST00000556847.1	chr14	69542061:69542128:69558390:69558604:69583082:69583212,	69558391	69558604	69558513	69558513	Nonsense_Mutation	G	A	p.R253*
UCEC	TCGA-AP-A0LT-01	SHMT1	ENST00000354098.3,ENST00000352886.6,ENST00000582653.1,ENST00000316694.3,ENST00000579558.1	chr17	18250827:18250970:18251638:18251754:18256985:18257131,	18251639	18251754	18251702	18251702	Nonsense_Mutation	G	A	p.R99*
UCEC	TCGA-AP-A0LT-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492875	56492875	Nonsense_Mutation	G	A	p.Q22*
UCEC	TCGA-AX-A05S-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460133	107460133	Nonsense_Mutation	G	A	p.Q101*
UCEC	TCGA-AX-A05S-01	KIAA0232	ENST00000425103.1	chr4	6784466:6784568:6825911:6826411:6843793:6843931,	6825912	6826411	6826396	6826396	Nonsense_Mutation	C	G	p.Y72*
UCEC	TCGA-AX-A05S-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340976	41340976	Nonsense_Mutation	G	A	p.R116*
UCEC	TCGA-AX-A05T-01	RPAP2	ENST00000477322.1,ENST00000610020.1	chr1	92811402:92811471:92846280:92846430:92852567:92852790,	92846281	92846430	92846378	92846378	Nonsense_Mutation	G	T	p.E596*
UCEC	TCGA-AX-A05U-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634329	70634329	Nonsense_Mutation	G	A	p.R271*
UCEC	TCGA-AX-A05W-01	WLS	ENST00000491811.1,ENST00000370976.3,ENST00000534713.1,ENST00000540432.1,ENST00000497187.1,ENST00000354777.2,ENST00000262348.4	chr1	68615950:68616039:68619199:68619336:68620781:68620867,	68619200	68619336	68619222	68619222	Nonsense_Mutation	G	A	p.R259*
UCEC	TCGA-AX-A05W-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-AX-A05W-01	ATF7IP	ENST00000544627.1,ENST00000540793.1,ENST00000543189.1,ENST00000537653.1,ENST00000536444.1,ENST00000261168.4	chr12	14609494:14609568:14610140:14610229:14613428:14613501,	14610141	14610229	14610169	14610169	Nonsense_Mutation	G	T	p.E700*
UCEC	TCGA-AX-A05Y-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-AX-A05Y-01	ALG8	ENST00000299626.5,ENST00000530454.1,ENST00000530910.1,ENST00000525870.1,ENST00000532050.1,ENST00000376156.3,ENST00000527099.1	chr11	77832182:77832220:77835066:77835260:77850539:77850638,77832182:77832220:77835066:77835260:77838403:77838482,	77835067	77835260	77835216	77835216	Nonsense_Mutation	C	T	p.W73*
UCEC	TCGA-AX-A060-01	MAP4K3	ENST00000341681.5,ENST00000536018.1,ENST00000437545.1,ENST00000263881.3	chr2	39478970:39479026:39481590:39481661:39485488:39485581,	39481591	39481661	39481629	39481629	Nonsense_Mutation	T	A	p.K835*
UCEC	TCGA-AX-A060-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55264103:55264224:55265377:55265683:55272042:55272106,	55265378	55265683	55265400	55265400	Nonsense_Mutation	A	T	p.Y116*
UCEC	TCGA-AX-A060-01	FGL1	ENST00000518650.1,ENST00000398056.2,ENST00000427924.1,ENST00000522444.1,ENST00000398054.1,ENST00000381841.2,ENST00000522636.1,ENST00000381840.2	chr8	17722166:17722260:17726056:17726244:17726424:17726510,	17726057	17726244	17726161	17726161	Nonsense_Mutation	C	T	p.W275*
UCEC	TCGA-AX-A062-01	MOG	ENST00000376889.3,ENST00000376894.4,ENST00000376902.3,ENST00000416766.2,ENST00000376888.2,ENST00000533330.2,ENST00000485211.1,ENST00000376917.3,ENST00000376898.3	chr6	29635680:29635701:29638057:29638174:29638477:29638498,	29638058	29638174	29638162	29638162	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-AX-A064-01	ARNTL2	ENST00000542388.1,ENST00000261178.5,ENST00000544915.1,ENST00000395901.2,ENST00000546179.1,ENST00000311001.5,ENST00000266503.5,ENST00000457040.2	chr12	27538413:27538493:27540160:27540253:27542111:27542229,	27540161	27540253	27540167	27540167	Nonsense_Mutation	G	T	p.E191*
UCEC	TCGA-AX-A064-01	NUCB1	ENST00000405315.4,ENST00000452087.1,ENST00000407032.1,ENST00000263273.5	chr19	49407636:49407711:49409009:49409142:49414405:49414509,	49409010	49409142	49409025	49409025	Nonsense_Mutation	C	T	p.R87*
UCEC	TCGA-AX-A06H-01	INTS3	ENST00000476843.1,ENST00000368669.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000368670.1,ENST00000512605.1,ENST00000481797.1,ENST00000503133.1	chr1	153741368:153741437:153742244:153742320:153742673:153742787,	153742245	153742320	153742293	153742293	Nonsense_Mutation	C	T	p.R788*
UCEC	TCGA-AX-A06H-01	TBC1D14	ENST00000467966.1,ENST00000409757.4,ENST00000410031.1,ENST00000448507.1,ENST00000451522.2	chr4	6995935:6996029:6998051:6998134:7000811:7000929,	6998052	6998134	6998131	6998131	Nonsense_Mutation	C	T	p.R348*
UCEC	TCGA-AX-A06H-01	ST7	ENST00000393446.2,ENST00000446490.1,ENST00000393443.1,ENST00000393451.3,ENST00000393444.3,ENST00000489293.1,ENST00000422922.1,ENST00000438863.1	chr7	116771938:116772014:116776134:116776289:116778488:116778586,	116776135	116776289	116776208	116776208	Nonsense_Mutation	C	T	p.Q262*
UCEC	TCGA-AX-A06H-01	SMG6	ENST00000575454.1,ENST00000263073.6,ENST00000536871.2,ENST00000544865.1,ENST00000354901.4	chr17	1985209:1985250:1989018:1989195:2075951:2076153,	1989019	1989195	1989033	1989033	Nonsense_Mutation	G	A	p.R1174*
UCEC	TCGA-AX-A06H-01	CSF2RA	ENST00000361536.3,ENST00000355805.2,ENST00000355432.3,ENST00000412290.1,ENST00000381529.3,ENST00000486791.1,ENST00000417535.2,ENST00000381524.3,ENST00000381509.3,ENST00000381500.1,ENST00000432318.2,ENST00000419094.1	chrX	1401578:1401672:1404670:1404813:1407411:1407533,	1404671	1404813	1404676	1404676	Nonsense_Mutation	C	T	p.R28*
UCEC	TCGA-AX-A0IW-01	HERC2	ENST00000261609.7	chr15	28375648:28375740:28377245:28377407:28377798:28377976,	28377246	28377407	28377309	28377309	Nonsense_Mutation	C	T	p.W4169*
UCEC	TCGA-AX-A2H5-01	CIB3	ENST00000541493.1	chr19	16280440:16280533:16283972:16284007:16284235:16284286,16275528:16275724:16283972:16284007:16284235:16284286,	16283973	16284007	16284002	16284002	Nonsense_Mutation	G	T	p.C19*
UCEC	TCGA-AX-A2HF-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112154723	112154723	Nonsense_Mutation	C	T	p.R332*
UCEC	TCGA-B5-A0JR-01	EIF2B3	ENST00000372183.3,ENST00000360403.2	chr1	45347283:45347411:45363026:45363116:45392299:45392327,	45363027	45363116	45363068	45363068	Nonsense_Mutation	G	T	p.Y205*
UCEC	TCGA-B5-A0JR-01	CNST	ENST00000366513.4	chr1	246729815:246729965:246754813:246755243:246784730:246784886,	246754814	246755243	246755243	246755243	Nonsense_Mutation	G	T	p.G127_splice
UCEC	TCGA-B5-A0JR-01	LYG1	ENST00000308528.4,ENST00000409448.1	chr2	99901150:99901283:99907699:99907884:99908998:99909103,	99907700	99907884	99907828	99907828	Nonsense_Mutation	G	A	p.Q69*
UCEC	TCGA-B5-A0JR-01	TMCC1	ENST00000393238.3	chr3	129390091:129390107:129546645:129547351:129551616:129551669,	129546646	129547351	129547008	129547008	Nonsense_Mutation	G	A	p.Q72*
UCEC	TCGA-B5-A0JR-01	CCM2	ENST00000492883.1	chr7	45077859:45078025:45104061:45104245:45109424:45109560,	45104062	45104245	45104092	45104092	Nonsense_Mutation	C	T	p.Q128*
UCEC	TCGA-B5-A0JR-01	CDHR3	ENST00000478080.1,ENST00000317716.9,ENST00000542731.1	chr7	105656372:105656471:105658291:105658518:105660818:105660990,	105658292	105658518	105658315	105658315	Nonsense_Mutation	C	T	p.R484*
UCEC	TCGA-B5-A0JR-01	LRRC6	ENST00000518642.1,ENST00000250173.1,ENST00000519595.1	chr8	133637557:133637700:133644985:133645209:133650180:133650353,	133644986	133645209	133645181	133645181	Nonsense_Mutation	G	T	p.S153*
UCEC	TCGA-B5-A0JR-01	CDK17	ENST00000543119.2,ENST00000261211.3,ENST00000542666.1	chr12	96694081:96694138:96704829:96704955:96707098:96707232,	96704830	96704955	96704853	96704853	Nonsense_Mutation	G	A	p.R174*
UCEC	TCGA-B5-A0JR-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42002888:42003547:42005348:42005694:42019377:42019604,	42005349	42005694	42005421	42005421	Nonsense_Mutation	C	T	p.R1053*
UCEC	TCGA-B5-A0JV-01	QPCT	ENST00000537448.1,ENST00000404976.1,ENST00000338415.3,ENST00000480050.1	chr2	37586722:37587001:37594374:37594551:37596827:37596845,	37594375	37594551	37594449	37594449	Nonsense_Mutation	G	A	p.W207*
UCEC	TCGA-B5-A0JV-01	TSEN2	ENST00000473755.1	chr3	12573068:12573158:12574160:12574272:12580300:12580787,12573068:12573158:12574160:12574272:12580659:12581119,	12574161	12574272	12574191	12574191	Nonsense_Mutation	C	T	p.R457*
UCEC	TCGA-B5-A0JV-01	ZBTB49	ENST00000511458.1	chr4	4304458:4304818:4314767:4314841:4317362:4317445,4304458:4304818:4314767:4314841:4322366:4322424,	4314768	4314841	4314792	4314792	Nonsense_Mutation	C	T	p.R443*
UCEC	TCGA-B5-A0JV-01	MRVI1	ENST00000424001.1,ENST00000558540.1	chr11	10651231:10651258:10653537:10653608:10673571:10673729,	10653538	10653608	10653577	10653577	Nonsense_Mutation	G	A	p.R121*
UCEC	TCGA-B5-A0JV-01	RNF125	ENST00000217740.3	chr18	29617147:29617232:29622141:29622236:29625604:29625695,	29622142	29622236	29622214	29622214	Nonsense_Mutation	G	T	p.E131*
UCEC	TCGA-B5-A0JV-01	SULF2	ENST00000361612.4,ENST00000463221.2,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46318869:46319039:46331262:46331414:46365446:46365686,	46331263	46331414	46331358	46331358	Nonsense_Mutation	T	A	p.K158*
UCEC	TCGA-B5-A0JZ-01	NISCH	ENST00000345716.4,ENST00000467594.1,ENST00000479054.1	chr3	52523351:52523694:52524720:52524849:52525367:52525529,52524144:52524247:52524720:52524849:52525367:52525529,	52524721	52524849	52524728	52524728	Nonsense_Mutation	G	A	p.W1207*
UCEC	TCGA-B5-A0JZ-01	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297817	139297817	Nonsense_Mutation	G	A	p.R64*
UCEC	TCGA-B5-A0JZ-01	PDLIM4	ENST00000253754.3,ENST00000379018.3,ENST00000418373.1	chr5	131602156:131602238:131606607:131606786:131606995:131607029,	131606608	131606786	131606680	131606680	Nonsense_Mutation	G	T	p.G134*
UCEC	TCGA-B5-A0JZ-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638605	176638605	Nonsense_Mutation	C	T	p.Q1069*
UCEC	TCGA-B5-A0JZ-01	TYRP1	ENST00000388918.5	chr9	12695739:12695837:12698450:12698655:12702270:12702438,	12698451	12698655	12698640	12698640	Nonsense_Mutation	G	T	p.G300*
UCEC	TCGA-B5-A0JZ-01	SMC5	ENST00000361138.5	chr9	72893406:72893541:72895674:72895815:72897337:72897499,	72895675	72895815	72895705	72895705	Nonsense_Mutation	C	T	p.Q237*
UCEC	TCGA-B5-A0JZ-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71724510	71724510	Nonsense_Mutation	G	A	p.Q1347*
UCEC	TCGA-B5-A0JZ-01	FLII	ENST00000488932.1	chr17	18157410:18157496:18157834:18157933:18158082:18158168,	18157835	18157933	18157905	18157905	Nonsense_Mutation	G	A	p.Q169*
UCEC	TCGA-B5-A0JZ-01	FLII	ENST00000478416.1,ENST00000584444.1,ENST00000578101.1,ENST00000578558.1,ENST00000579294.1,ENST00000327031.4	chr17	18157410:18157496:18157834:18157996:18158082:18158168,	18157835	18157996	18157905	18157905	Nonsense_Mutation	G	A	p.Q169*
UCEC	TCGA-B5-A0JZ-01	MAP2K7	ENST00000397979.3,ENST00000468058.1,ENST00000545011.1,ENST00000397983.3	chr19	7976134:7976215:7976320:7976463:7977033:7977079,	7976321	7976463	7976393	7976393	Nonsense_Mutation	C	T	p.Q337*
UCEC	TCGA-B5-A0JZ-01	MAP2K7	ENST00000397981.3	chr19	7976134:7976215:7976299:7976463:7977033:7977079,	7976300	7976463	7976393	7976393	Nonsense_Mutation	C	T	p.Q337*
UCEC	TCGA-B5-A0JZ-01	STK4	ENST00000396731.4,ENST00000372801.1,ENST00000474717.1,ENST00000372806.3	chr20	43610469:43610584:43615772:43615937:43623730:43623898,	43615773	43615937	43615854	43615854	Nonsense_Mutation	C	T	p.R148*
UCEC	TCGA-B5-A0K0-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174814723	174814723	Nonsense_Mutation	C	T	p.Q63*
UCEC	TCGA-B5-A0K2-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149699331	149699331	Nonsense_Mutation	G	T	p.G94*
UCEC	TCGA-B5-A0K2-01	HERC1	ENST00000443617.2	chr15	63943451:63943579:63944612:63944740:63946317:63946523,	63944613	63944740	63944723	63944723	Nonsense_Mutation	C	T	p.W3436*
UCEC	TCGA-B5-A0K2-01	BBS2	ENST00000562012.1,ENST00000568104.1,ENST00000245157.5	chr16	56533743:56533819:56534765:56534937:56535264:56535409,	56534766	56534937	56534837	56534837	Nonsense_Mutation	G	T	p.C442*
UCEC	TCGA-B5-A0K2-01	BBS2	ENST00000566495.1	chr16	56533743:56533819:56534765:56534889:56535264:56535409,	56534766	56534889	56534837	56534837	Nonsense_Mutation	G	T	p.C442*
UCEC	TCGA-B5-A0K3-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58437559	58437559	Nonsense_Mutation	G	A	p.R664*
UCEC	TCGA-B5-A0K4-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101054	27101054	Nonsense_Mutation	C	T	p.R1446*
UCEC	TCGA-B5-A0K6-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14105917	14105917	Nonsense_Mutation	G	T	p.E543*
UCEC	TCGA-B5-A0K6-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1	chr2	136402948:136403097:136409299:136409602:136418839:136418963,	136409300	136409602	136409417	136409417	Nonsense_Mutation	C	T	p.Q580*
UCEC	TCGA-B5-A0K6-01	R3HDM1	ENST00000264160.4,ENST00000329971.3	chr2	136402948:136403097:136409302:136409602:136418839:136418963,	136409303	136409602	136409417	136409417	Nonsense_Mutation	C	T	p.Q580*
UCEC	TCGA-B5-A0K6-01	SLFN5	ENST00000542451.1	chr17	33570107:33570162:33585669:33586721:33587989:33588115,	33585670	33586721	33586417	33586417	Nonsense_Mutation	T	A	p.C236*
UCEC	TCGA-B5-A0K9-01	MEAF6	ENST00000448519.2,ENST00000487788.1,ENST00000487792.1,ENST00000373075.2	chr1	37962147:37962205:37967404:37967597:37974878:37974924,37961485:37961519:37967404:37967597:37974878:37974920,37962307:37962337:37967404:37967597:37974878:37974924,	37967405	37967597	37967427	37967427	Nonsense_Mutation	G	A	p.R171*
UCEC	TCGA-B5-A0K9-01	SSR2	ENST00000488179.2	chr1	155979340:155979441:155981600:155982356:155984751:155984860,	155981601	155982356	155981618	155981618	Nonsense_Mutation	G	A	p.R142*
UCEC	TCGA-B5-A0K9-01	SSR2	ENST00000484320.2,ENST00000295702.4,ENST00000532074.1,ENST00000480567.1	chr1	155979340:155979441:155981600:155981678:155984751:155984860,	155981601	155981678	155981618	155981618	Nonsense_Mutation	G	A	p.R142*
UCEC	TCGA-B5-A0K9-01	ABCA12	ENST00000272895.7,ENST00000389661.4	chr2	215823747:215823802:215831571:215831677:215833443:215833531,	215831572	215831677	215831578	215831578	Nonsense_Mutation	G	A	p.R1960*
UCEC	TCGA-B5-A0K9-01	SLC4A7	ENST00000454389.1,ENST00000295736.5,ENST00000388777.4	chr3	27465527:27465643:27472788:27473160:27475445:27475595,27465527:27465643:27472788:27473160:27475406:27475595,	27472789	27473160	27472924	27472924	Nonsense_Mutation	G	A	p.Q339*
UCEC	TCGA-B5-A0K9-01	KLHL8	ENST00000273963.5,ENST00000425278.2,ENST00000512111.1,ENST00000498875.2	chr4	88097908:88098020:88099628:88099772:88104354:88104541,	88099629	88099772	88099656	88099656	Nonsense_Mutation	G	A	p.R357*
UCEC	TCGA-B5-A0K9-01	ME1	ENST00000541327.1,ENST00000369705.3,ENST00000543031.1	chr6	83963347:83963457:84025028:84025132:84055891:84056053,	84025029	84025132	84025096	84025096	Nonsense_Mutation	G	A	p.Q213*
UCEC	TCGA-B5-A0K9-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000360280.3,ENST00000357409.5	chr9	79966232:79966362:79968324:79968557:79971629:79971783,	79968325	79968557	79968532	79968532	Nonsense_Mutation	G	T	p.E2543*
UCEC	TCGA-B5-A0K9-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000568255.1,ENST00000570161.1,ENST00000389936.4	chr15	42052520:42052727:42053936:42054048:42054326:42054395,	42053937	42054048	42053985	42053985	Nonsense_Mutation	G	T	p.G2483*
UCEC	TCGA-B5-A11I-01	EIF3E	ENST00000521614.1,ENST00000522352.1,ENST00000220849.5,ENST00000519030.1	chr8	109214093:109214152:109215211:109215346:109215629:109215732,	109215212	109215346	109215229	109215229	Nonsense_Mutation	G	A	p.Q428*
UCEC	TCGA-B5-A11I-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577022	Nonsense_Mutation	G	A	p.R306*
UCEC	TCGA-B5-A11M-01	CCAR1	ENST00000536012.1,ENST00000479143.2,ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543706.1,ENST00000543225.1	chr10	70517106:70517134:70520763:70520949:70525644:70525684,	70520764	70520949	70520794	70520794	Nonsense_Mutation	C	T	p.R651*
UCEC	TCGA-B5-A11M-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46322550	46322550	Nonsense_Mutation	G	A	p.R312*
UCEC	TCGA-B5-A11O-01	GLCCI1	ENST00000223145.5	chr7	8110712:8110761:8124526:8124647:8125822:8125870,	8124527	8124647	8124613	8124613	Nonsense_Mutation	G	T	p.G422*
UCEC	TCGA-B5-A11O-01	PLEKHA2	ENST00000388745.4,ENST00000518571.1,ENST00000521784.1,ENST00000420274.1	chr8	38810814:38810885:38814840:38814904:38826109:38826187,	38814841	38814904	38814898	38814898	Nonsense_Mutation	C	A	p.Y277*
UCEC	TCGA-B5-A11O-01	PLAA	ENST00000520884.1	chr9	26928305:26928406:26935010:26935204:26946894:26946981,	26935011	26935204	26935114	26935114	Nonsense_Mutation	G	T	p.Y80*
UCEC	TCGA-B5-A11O-01	PLAA	ENST00000523212.1	chr9	26928305:26928406:26935010:26935195:26946894:26946981,	26935011	26935195	26935114	26935114	Nonsense_Mutation	G	T	p.Y80*
UCEC	TCGA-B5-A11O-01	PATE2	ENST00000358524.3	chr11	125647333:125647413:125647768:125647897:125648446:125648470,	125647769	125647897	125647827	125647827	Nonsense_Mutation	G	T	p.C49*
UCEC	TCGA-B5-A11V-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919199	57919199	Nonsense_Mutation	C	T	p.R150*
UCEC	TCGA-B5-A11Z-01	PTPRN	ENST00000295718.2,ENST00000446182.1,ENST00000440552.1,ENST00000412847.1,ENST00000451506.1,ENST00000606213.1,ENST00000409251.3,ENST00000442029.1,ENST00000423636.2	chr2	220168456:220168553:220172165:220172279:220172513:220172564,	220172166	220172279	220172184	220172184	Nonsense_Mutation	G	A	p.R88*
UCEC	TCGA-B5-A1MU-01	NUP98	ENST00000524563.1	chr11	3704429:3704671:3707293:3707424:3712576:3712719,	3707294	3707424	3707393	3707393	Nonsense_Mutation	G	A	p.R1496*
UCEC	TCGA-B5-A1MU-01	NUP98	ENST00000324932.7,ENST00000429801.1	chr11	3704429:3704671:3707202:3707424:3712576:3712719,	3707203	3707424	3707393	3707393	Nonsense_Mutation	G	A	p.R1496*
UCEC	TCGA-B5-A1MU-01	PIBF1	ENST00000326291.6	chr13	73428194:73428293:73467921:73468087:73482668:73482819,	73467922	73468087	73467980	73467980	Nonsense_Mutation	A	T	p.K461*
UCEC	TCGA-BG-A0LX-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000432347.2,ENST00000354456.3,ENST00000394288.3,ENST00000427266.1,ENST00000512292.1,ENST00000507377.1	chr4	129012501:129012667:129019340:129019485:129028293:129028468,	129019341	129019485	129019450	129019450	Nonsense_Mutation	C	T	p.Q260*
UCEC	TCGA-BG-A0LX-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000471036.1,ENST00000510291.1,ENST00000445419.2,ENST00000503631.1	chr6	82891595:82891745:82900789:82900933:82901503:82901571,	82900790	82900933	82900917	82900917	Nonsense_Mutation	C	A	p.G1150*
UCEC	TCGA-BG-A0LX-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7776887:7777054:7780583:7780721:7785108:7785222,	7780584	7780721	7780691	7780691	Nonsense_Mutation	G	T	p.E689*
UCEC	TCGA-BG-A0LX-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685722	51685722	Nonsense_Mutation	G	A	p.R390*
UCEC	TCGA-BG-A0LX-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67644949	67644949	Nonsense_Mutation	C	T	p.Q72*
UCEC	TCGA-BG-A0LX-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000269280.4	chr17	5421065:5421207:5424843:5425106:5433800:5434024,	5424844	5425106	5425026	5425026	Nonsense_Mutation	C	A	p.E1201*
UCEC	TCGA-BG-A0LX-01	APOBEC3D	ENST00000381568.4,ENST00000216099.8	chr22	39421074:39421354:39421561:39421676:39425367:39425524,	39421562	39421676	39421620	39421620	Nonsense_Mutation	G	A	p.W183*
UCEC	TCGA-BG-A0M0-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2,ENST00000415489.1	chr2	55894125:55894228:55894996:55895093:55898453:55898503,	55894997	55895093	55895034	55895034	Nonsense_Mutation	C	A	p.E346*
UCEC	TCGA-BG-A0M0-01	TRIM69	ENST00000329464.4,ENST00000559390.1	chr15	45028763:45028908:45047097:45047574:45048565:45048661,	45047098	45047574	45047236	45047236	Nonsense_Mutation	C	T	p.R49*
UCEC	TCGA-BG-A0M4-01	SIKE1	ENST00000060969.5,ENST00000510745.1,ENST00000369528.5	chr1	115316965:115316993:115318966:115319080:115321762:115321905,	115318967	115319080	115319041	115319041	Nonsense_Mutation	C	A	p.E154*
UCEC	TCGA-BG-A0M4-01	VPS45	ENST00000535106.1,ENST00000369130.3,ENST00000369128.5	chr1	150054799:150054967:150064030:150064189:150064395:150064503,	150064031	150064189	150064115	150064115	Nonsense_Mutation	C	T	p.R397*
UCEC	TCGA-BG-A0M4-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390534	197390534	Nonsense_Mutation	C	T	p.R526*
UCEC	TCGA-BG-A0M4-01	GALNT14	ENST00000324589.5,ENST00000349752.5,ENST00000475320.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31133662:31133925:31135088:31135208:31152260:31152353,31133662:31133925:31135088:31135208:31146984:31147129,	31135089	31135208	31135103	31135103	Nonsense_Mutation	C	A	p.G501*
UCEC	TCGA-BG-A0M4-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149699322	149699322	Nonsense_Mutation	G	T	p.G91*
UCEC	TCGA-BG-A0M4-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000522756.1,ENST00000423620.2	chr8	95674728:95674783:95676924:95677035:95677154:95677287,	95676925	95677035	95676968	95676968	Nonsense_Mutation	C	T	p.R230*
UCEC	TCGA-BG-A0M4-01	AGBL2	ENST00000357610.3,ENST00000528244.1,ENST00000530577.1,ENST00000298861.4,ENST00000529154.1,ENST00000525123.1	chr11	47726094:47726280:47731928:47732063:47735835:47735899,47727415:47727469:47731928:47732063:47735835:47735899,	47731929	47732063	47731941	47731941	Nonsense_Mutation	C	A	p.E74*
UCEC	TCGA-BG-A0M4-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27518167:27518477:27519860:27519976:27523069:27523222,	27519861	27519976	27519935	27519935	Nonsense_Mutation	G	A	p.R390*
UCEC	TCGA-BG-A0M4-01	LONP2	ENST00000285737.4,ENST00000535754.1,ENST00000416006.3	chr16	48295334:48295498:48296688:48296783:48303926:48304185,	48296689	48296783	48296766	48296766	Nonsense_Mutation	G	A	p.W322*
UCEC	TCGA-BG-A0M4-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655479	67655479	Nonsense_Mutation	C	T	p.R448*
UCEC	TCGA-BG-A0M7-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000409503.1,ENST00000540984.1,ENST00000531094.1,ENST00000529669.1,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151380575:151380716:151380884:151381057:151381169:151381301,	151380885	151381057	151381039	151381039	Nonsense_Mutation	G	A	p.R694*
UCEC	TCGA-BG-A0M7-01	SND1	ENST00000354725.3	chr7	127569240:127569382:127630999:127631109:127714553:127714674,	127631000	127631109	127631104	127631104	Nonsense_Mutation	C	T	p.R592*
UCEC	TCGA-BG-A0M7-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748642	43748642	Nonsense_Mutation	C	A	p.E717*
UCEC	TCGA-BG-A0M8-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1	chr11	9172226:9172311:9173904:9173989:9182259:9182412,	9173905	9173989	9173925	9173925	Nonsense_Mutation	G	T	p.S834*
UCEC	TCGA-BG-A0M8-01	SPPL2A	ENST00000560288.1	chr15	51040884:51041067:51041832:51041943:51057664:51057906,	51041833	51041943	51041884	51041884	Nonsense_Mutation	G	T	p.C42*
UCEC	TCGA-BG-A0M9-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097802	27097802	Nonsense_Mutation	C	T	p.Q1131*
UCEC	TCGA-BG-A0M9-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645273	67645273	Nonsense_Mutation	C	T	p.Q180*
UCEC	TCGA-BG-A0M9-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661483	40661483	Nonsense_Mutation	C	T	p.R417*
UCEC	TCGA-BG-A0MG-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539091	187539091	Nonsense_Mutation	G	C	p.Y2883*
UCEC	TCGA-BG-A0MG-01	ELAVL1	ENST00000596459.1,ENST00000351593.5,ENST00000407627.2	chr19	8028513:8028691:8032448:8032674:8038608:8038669,	8032449	8032674	8032492	8032492	Nonsense_Mutation	G	A	p.R205*
UCEC	TCGA-BG-A0MG-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034471	47034471	Nonsense_Mutation	C	T	p.R251*
UCEC	TCGA-BG-A0MO-01	TMEM150A	ENST00000306353.3,ENST00000422458.2,ENST00000409668.1,ENST00000334462.5,ENST00000444380.1,ENST00000431593.1	chr2	85826207:85826440:85826647:85826825:85827013:85827113,	85826648	85826825	85826690	85826690	Nonsense_Mutation	G	A	p.R178*
UCEC	TCGA-BG-A0MO-01	PDE8B	ENST00000340978.3,ENST00000342343.4,ENST00000346042.3,ENST00000264917.5	chr5	76703205:76703282:76704717:76704882:76707500:76707546,	76704718	76704882	76704797	76704797	Nonsense_Mutation	T	G	p.L482*
UCEC	TCGA-BG-A0MQ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072149	197072149	Nonsense_Mutation	G	A	p.R2078*
UCEC	TCGA-BG-A0MQ-01	NEK4	ENST00000496822.1	chr3	52800331:52800391:52802353:52802582:52804669:52804872,	52802354	52802582	52802572	52802572	Nonsense_Mutation	G	A	p.R48*
UCEC	TCGA-BG-A0MQ-01	NEK4	ENST00000383721.4	chr3	52800331:52800391:52802353:52802620:52804669:52804872,	52802354	52802620	52802572	52802572	Nonsense_Mutation	G	A	p.R48*
UCEC	TCGA-BG-A0MQ-01	MKRN1	ENST00000255977.2,ENST00000474576.1,ENST00000496169.1,ENST00000475010.1,ENST00000471104.1,ENST00000494939.1,ENST00000467513.1,ENST00000443720.2	chr7	140158977:140159033:140159506:140159736:140171682:140171811,	140159507	140159736	140159711	140159711	Nonsense_Mutation	G	A	p.Q114*
UCEC	TCGA-BG-A0MQ-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95183081:95183213:95186024:95186224:95186329:95186488,	95186025	95186224	95186159	95186159	Nonsense_Mutation	C	A	p.G217*
UCEC	TCGA-BG-A0RY-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-BG-A0VX-01	RPGR	ENST00000339363.3	chrX	38135839:38136025:38146346:38147294:38150211:38150277,	38146347	38147294	38147174	38147174	Nonsense_Mutation	G	A	p.Q565*
UCEC	TCGA-BG-A0VX-01	RPGR	ENST00000342811.3,ENST00000318842.7,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38146346:38146498:38147113:38147294:38150211:38150277,	38147114	38147294	38147174	38147174	Nonsense_Mutation	G	A	p.Q565*
UCEC	TCGA-BG-A0VZ-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048495	42048495	Nonsense_Mutation	G	C	p.Y658*
UCEC	TCGA-BG-A0VZ-01	CDC73	ENST00000367435.3	chr1	193107214:193107303:193110979:193111196:193116996:193117095,	193110980	193111196	193111167	193111167	Nonsense_Mutation	C	T	p.R234*
UCEC	TCGA-BG-A0VZ-01	RAPGEF1	ENST00000372189.3,ENST00000372195.1,ENST00000372190.3	chr9	134504488:134504641:134514021:134514178:134518625:134518778,134505622:134505711:134514021:134514178:134518625:134518778,	134514022	134514178	134514084	134514084	Nonsense_Mutation	C	A	p.E198*
UCEC	TCGA-BG-A0VZ-01	IGF1R	ENST00000558762.1,ENST00000268035.6	chr15	99465376:99465660:99467104:99467241:99467753:99467865,	99467105	99467241	99467107	99467107	Nonsense_Mutation	G	T	p.G830*
UCEC	TCGA-BG-A0VZ-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831069	72831069	Nonsense_Mutation	G	A	p.Q1838*
UCEC	TCGA-BG-A0W1-01	PTGFRN	ENST00000393203.2	chr1	117503864:117504290:117509532:117509952:117516837:117516945,	117509533	117509952	117509898	117509898	Nonsense_Mutation	C	T	p.R669*
UCEC	TCGA-BG-A0W2-01	APP	ENST00000456209.2,ENST00000358918.3	chr21	27264109:27264180:27269884:27269985:27277335:27277389,27264109:27264180:27269884:27269985:27284052:27284274,	27269885	27269985	27269929	27269929	Nonsense_Mutation	C	A	p.E674*
UCEC	TCGA-BG-A0YU-01	UROD	ENST00000491300.1,ENST00000486699.1,ENST00000460334.1,ENST00000473012.1	chr1	45478963:45479026:45479246:45479463:45479580:45479628,	45479247	45479463	45479419	45479419	Nonsense_Mutation	C	T	p.R144*
UCEC	TCGA-BG-A0YU-01	UROD	ENST00000490385.1,ENST00000494399.1,ENST00000246337.4,ENST00000478467.1,ENST00000491773.1,ENST00000462688.1,ENST00000469548.1	chr1	45478963:45479026:45479265:45479463:45479580:45479628,	45479266	45479463	45479419	45479419	Nonsense_Mutation	C	T	p.R144*
UCEC	TCGA-BG-A0YU-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183196652:183196832:183197508:183197754:183200095:183200238,	183197509	183197754	183197592	183197592	Nonsense_Mutation	C	T	p.Q518*
UCEC	TCGA-BG-A0YV-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27100943	27100943	Nonsense_Mutation	C	T	p.Q1409*
UCEC	TCGA-BG-A0YV-01	ROGDI	ENST00000586504.1,ENST00000591292.1,ENST00000591392.1,ENST00000589543.1,ENST00000586336.1,ENST00000322048.7,ENST00000587843.1	chr16	4848071:4848185:4848569:4848668:4849686:4849776,	4848570	4848668	4848647	4848647	Nonsense_Mutation	G	A	p.Q152*
UCEC	TCGA-BG-A0YV-01	ROGDI	ENST00000588201.1	chr16	4848071:4848185:4848569:4848802:4849686:4849776,	4848570	4848802	4848647	4848647	Nonsense_Mutation	G	A	p.Q152*
UCEC	TCGA-BG-A187-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41313097:41313323:41319793:41319934:41337101:41337244,	41319794	41319934	41319796	41319796	Nonsense_Mutation	G	A	p.R1016*
UCEC	TCGA-BG-A187-01	AFMID	ENST00000585419.1,ENST00000409257.5	chr17	76201520:76201599:76201683:76201819:76202026:76202131,	76201684	76201819	76201796	76201796	Nonsense_Mutation	C	T	p.R253*
UCEC	TCGA-BG-A187-01	AFMID	ENST00000327898.5	chr17	76201520:76201599:76201683:76201834:76202026:76202131,	76201684	76201834	76201796	76201796	Nonsense_Mutation	C	T	p.R253*
UCEC	TCGA-BG-A18B-01	ECHDC2	ENST00000487866.1,ENST00000486170.2,ENST00000536120.1,ENST00000479593.1,ENST00000476477.2,ENST00000371522.4	chr1	53370460:53370505:53370705:53370762:53373539:53373626,53370460:53370505:53370705:53370762:53372190:53372283,	53370706	53370762	53370727	53370727	Nonsense_Mutation	G	A	p.R165*
UCEC	TCGA-BG-A18B-01	ECHDC2	ENST00000460612.1	chr1	53370460:53370505:53370705:53372283:53373539:53373626,	53370706	53372283	53370727	53370727	Nonsense_Mutation	G	A	p.R165*
UCEC	TCGA-BG-A18B-01	MOV10	ENST00000369645.1	chr1	113217341:113217351:113217469:113217671:113231556:113231760,	113217470	113217671	113217559	113217559	Nonsense_Mutation	C	T	p.Q9*
UCEC	TCGA-BG-A18B-01	MOV10	ENST00000468624.1,ENST00000413052.2	chr1	113217341:113217351:113217453:113217671:113231556:113231760,	113217454	113217671	113217559	113217559	Nonsense_Mutation	C	T	p.Q9*
UCEC	TCGA-BG-A18B-01	FUBP3	ENST00000319725.9	chr9	133489674:133489732:133491741:133491904:133493183:133493282,	133491742	133491904	133491782	133491782	Nonsense_Mutation	C	T	p.R149*
UCEC	TCGA-BG-A18B-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-BG-A18B-01	CTTN	ENST00000376561.3,ENST00000301843.8,ENST00000415461.1,ENST00000346329.3	chr11	70261768:70261823:70263118:70263229:70265851:70265948,	70263119	70263229	70263163	70263163	Nonsense_Mutation	C	T	p.R168*
UCEC	TCGA-BG-A18C-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115222309:115222329:115222879:115223099:115226819:115226985,	115222880	115223099	115222999	115222999	Nonsense_Mutation	G	T	p.Y249*
UCEC	TCGA-BG-A18C-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5790369	5790369	Nonsense_Mutation	C	G	p.S1662*
UCEC	TCGA-BK-A0C9-01	PABPC4	ENST00000421687.2,ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000527718.1,ENST00000372862.3	chr1	40030142:40030214:40030777:40031050:40033422:40033518,40030372:40030445:40030777:40031050:40033422:40033518,	40030778	40031050	40030780	40030780	Nonsense_Mutation	G	A	p.Q415*
UCEC	TCGA-BK-A0C9-01	ZSWIM5	ENST00000359600.5	chr1	45516745:45516925:45524280:45524431:45525770:45525919,	45524281	45524431	45524299	45524299	Nonsense_Mutation	G	A	p.Q412*
UCEC	TCGA-BK-A0C9-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616326	116616326	Nonsense_Mutation	G	A	p.R624*
UCEC	TCGA-BK-A0C9-01	A2ML1	ENST00000545692.1,ENST00000540049.1,ENST00000299698.7,ENST00000539547.1,ENST00000541459.1	chr12	8998672:8998818:9000144:9000294:9001315:9001391,	9000145	9000294	9000181	9000181	Nonsense_Mutation	G	T	p.G574*
UCEC	TCGA-BK-A0C9-01	KLF12	ENST00000377669.2,ENST00000472022.1,ENST00000377666.4	chr13	74387288:74387424:74419963:74420510:74518117:74518207,	74419964	74420510	74420159	74420159	Nonsense_Mutation	G	A	p.Q159*
UCEC	TCGA-BK-A0C9-01	SEL1L	ENST00000336735.4,ENST00000554744.1,ENST00000555824.1	chr14	81969064:81969227:81970544:81970650:81972417:81972499,	81970545	81970650	81970624	81970624	Nonsense_Mutation	G	A	p.Q179*
UCEC	TCGA-BK-A0C9-01	NUP93	ENST00000569842.1	chr16	56764060:56764123:56782145:56782338:56792449:56792567,	56782146	56782338	56782202	56782202	Nonsense_Mutation	C	T	p.Q15*
UCEC	TCGA-BK-A0C9-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645326	67645326	Nonsense_Mutation	T	A	p.Y197*
UCEC	TCGA-BK-A0C9-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645327	67645327	Nonsense_Mutation	C	T	p.Q198*
UCEC	TCGA-BK-A0C9-01	SS18	ENST00000269137.7,ENST00000539849.1,ENST00000545952.1,ENST00000269138.5,ENST00000585121.1,ENST00000580958.1,ENST00000542420.2,ENST00000579640.1,ENST00000415083.2,ENST00000542743.1	chr18	23598313:23598344:23612362:23612496:23614968:23615029,	23612363	23612496	23612428	23612428	Nonsense_Mutation	C	A	p.G389*
UCEC	TCGA-BK-A0C9-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56587677	56587677	Nonsense_Mutation	C	T	p.Q720*
UCEC	TCGA-BK-A0C9-01	ICOSLG	ENST00000400377.3	chr21	45656749:45657100:45658330:45658371:45660686:45660723,45655154:45655445:45658330:45658371:45660686:45660723,	45658331	45658371	45658337	45658337	Nonsense_Mutation	G	A	p.R17*
UCEC	TCGA-BK-A0CA-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101609	27101609	Nonsense_Mutation	C	T	p.Q1631*
UCEC	TCGA-BK-A0CA-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101609	27101609	Nonsense_Mutation	C	T	p.Q1631*
UCEC	TCGA-BK-A0CB-01	WAS	ENST00000483750.1,ENST00000376701.4	chrX	48544469:48544523:48545169:48545344:48546442:48546485,	48545170	48545344	48545265	48545265	Nonsense_Mutation	G	T	p.G219*
UCEC	TCGA-BK-A0CC-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576855	7576855	Nonsense_Mutation	G	A	p.Q331*
UCEC	TCGA-BS-A0T9-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655479	67655479	Nonsense_Mutation	C	T	p.R448*
UCEC	TCGA-BS-A0TA-01	FAM129B	ENST00000373312.3,ENST00000373314.3	chr9	130270700:130270817:130271254:130271410:130272424:130272612,	130271255	130271410	130271314	130271314	Nonsense_Mutation	G	A	p.R420*
UCEC	TCGA-BS-A0TA-01	G6PC3	ENST00000588558.1,ENST00000269097.4,ENST00000585361.1,ENST00000591696.1	chr17	42152118:42152138:42152336:42152455:42152677:42152819,	42152337	42152455	42152401	42152401	Nonsense_Mutation	C	T	p.R161*
UCEC	TCGA-BS-A0TA-01	G6PC3	ENST00000590639.1	chr17	42152118:42152138:42152336:42152819:42153047:42153200,	42152337	42152819	42152401	42152401	Nonsense_Mutation	C	T	p.R161*
UCEC	TCGA-BS-A0TD-01	EGFLAM	ENST00000322350.5,ENST00000354891.3,ENST00000336740.6	chr5	38412605:38412750:38418167:38418357:38425068:38425194,	38418168	38418357	38418258	38418258	Nonsense_Mutation	C	T	p.R529*
UCEC	TCGA-BS-A0TE-01	GRIA4	ENST00000428631.2,ENST00000525187.1,ENST00000393127.2,ENST00000530497.1,ENST00000393125.2,ENST00000525032.1,ENST00000282499.5	chr11	105483002:105483161:105623706:105623946:105732749:105732934,	105623707	105623946	105623745	105623745	Nonsense_Mutation	G	T	p.G96*
UCEC	TCGA-BS-A0TI-01	TJP3	ENST00000589378.1,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9,ENST00000587912.1	chr19	3708500:3708559:3728601:3728711:3730025:3730128,3728421:3728478:3728601:3728711:3730025:3730128,	3728602	3728711	3728710	3728710	Nonsense_Mutation	C	T	p.Q72_splice
UCEC	TCGA-BS-A0TI-01	TJP3	ENST00000590545.1	chr19	3728421:3728478:3728571:3728711:3730025:3730128,	3728572	3728711	3728710	3728710	Nonsense_Mutation	C	T	p.Q72_splice
UCEC	TCGA-BS-A0TJ-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762298	36762298	Nonsense_Mutation	C	T	p.R744*
UCEC	TCGA-BS-A0TJ-01	CCDC24	ENST00000479055.1,ENST00000472562.1,ENST00000490563.1,ENST00000490064.1,ENST00000486504.1,ENST00000372318.3,ENST00000486064.1	chr1	44461272:44461342:44461449:44461528:44461609:44461652,	44461450	44461528	44461479	44461479	Nonsense_Mutation	C	T	p.Q218*
UCEC	TCGA-BS-A0TJ-01	PLK4	ENST00000270861.5,ENST00000514379.1,ENST00000515069.1,ENST00000513090.1,ENST00000507249.1	chr4	128813519:128813669:128814439:128814573:128814667:128814759,	128814440	128814573	128814571	128814571	Nonsense_Mutation	G	T	p.E774*
UCEC	TCGA-BS-A0TJ-01	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830727	13830727	Nonsense_Mutation	C	A	p.G2014*
UCEC	TCGA-BS-A0TJ-01	STX7	ENST00000367937.4,ENST00000448348.3,ENST00000367941.2	chr6	132792601:132792739:132793420:132793514:132796731:132796801,	132793421	132793514	132793423	132793423	Nonsense_Mutation	G	A	p.Q83*
UCEC	TCGA-BS-A0TJ-01	TNC	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1	chr9	117783435:117783546:117786251:117786415:117788812:117788974,	117786252	117786415	117786399	117786399	Nonsense_Mutation	G	T	p.Y2116*
UCEC	TCGA-BS-A0TJ-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-BS-A0TJ-01	LLGL2	ENST00000545227.2,ENST00000577500.1,ENST00000167462.5	chr17	73570533:73570576:73570690:73570749:73570954:73570987,73570533:73570576:73570690:73570749:73570951:73571002,73570293:73570341:73570690:73570749:73570951:73571002,	73570691	73570749	73570746	73570746	Nonsense_Mutation	G	T	p.G1018*
UCEC	TCGA-BS-A0TJ-01	LLGL2	ENST00000582393.1	chr17	73570293:73570341:73570533:73570749:73570951:73571002,	73570534	73570749	73570746	73570746	Nonsense_Mutation	G	T	p.G1018*
UCEC	TCGA-BS-A0U5-01	ANXA7	ENST00000372919.4,ENST00000372921.5,ENST00000535178.1	chr10	75138668:75138781:75139636:75139712:75139788:75139959,	75139637	75139712	75139703	75139703	Nonsense_Mutation	G	A	p.R389*
UCEC	TCGA-BS-A0U7-01	RAB13	ENST00000484297.1,ENST00000495720.1,ENST00000368575.3	chr1	153955220:153955284:153955694:153955772:153955996:153956057,	153955695	153955772	153955755	153955755	Nonsense_Mutation	G	T	p.Y88*
UCEC	TCGA-BS-A0U7-01	PDS5B	ENST00000450460.1,ENST00000498550.1,ENST00000315596.10	chr13	33252971:33253066:33258014:33258160:33261270:33261422,	33258015	33258160	33258137	33258137	Nonsense_Mutation	A	T	p.R394*
UCEC	TCGA-BS-A0U7-01	TBC1D20	ENST00000354200.4,ENST00000494633.1,ENST00000461304.1	chr20	425693:425774:428532:428718:442979:443175,	428533	428718	428590	428590	Nonsense_Mutation	G	A	p.R67*
UCEC	TCGA-BS-A0U7-01	RBM39	ENST00000403542.2,ENST00000434927.1,ENST00000253363.6,ENST00000412738.1,ENST00000429968.1,ENST00000361162.6,ENST00000481037.1,ENST00000461283.1,ENST00000463004.1,ENST00000492779.1,ENST00000444878.1,ENST00000407261.4,ENST00000338163.6	chr20	34313045:34313077:34317233:34317287:34319862:34320057,34313045:34313077:34317233:34317287:34317383:34317449,	34317234	34317287	34317283	34317283	Nonsense_Mutation	G	A	p.R123*
UCEC	TCGA-BS-A0U7-01	RBM39	ENST00000374038.3,ENST00000425184.1	chr20	34313045:34313077:34317233:34317284:34317383:34317449,	34317234	34317284	34317283	34317283	Nonsense_Mutation	G	A	p.R123*
UCEC	TCGA-BS-A0U7-01	ADA	ENST00000464097.1,ENST00000372874.4,ENST00000537820.1,ENST00000539235.1,ENST00000492931.1	chr20	43249662:43249788:43251228:43251293:43251469:43251571,	43251229	43251293	43251282	43251282	Nonsense_Mutation	C	T	p.W264*
UCEC	TCGA-BS-A0U8-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179631238:179631421:179632482:179632626:179638328:179638539,	179632483	179632626	179632591	179632591	Nonsense_Mutation	C	T	p.Q872*
UCEC	TCGA-BS-A0U8-01	FAM129A	ENST00000367511.3,ENST00000487074.1	chr1	184767212:184767324:184772718:184772826:184775079:184775119,	184772719	184772826	184772748	184772748	Nonsense_Mutation	G	A	p.Q509*
UCEC	TCGA-BS-A0U8-01	FYCO1	ENST00000296137.2,ENST00000535325.1	chr3	46011166:46011257:46014579:46014723:46016730:46016837,	46014580	46014723	46014692	46014692	Nonsense_Mutation	G	A	p.Q143*
UCEC	TCGA-BS-A0U8-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145609279:145609473:145610219:145610480:145613012:145613306,	145610220	145610480	145610441	145610441	Nonsense_Mutation	C	T	p.R271*
UCEC	TCGA-BS-A0U8-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5385192:5385441:5391449:5391725:5396546:5396907,	5391450	5391725	5391498	5391498	Nonsense_Mutation	C	A	p.E1808*
UCEC	TCGA-BS-A0U8-01	CDK6	ENST00000265734.4,ENST00000424848.2	chr7	92300739:92300849:92354939:92355107:92404009:92404145,	92354940	92355107	92355008	92355008	Nonsense_Mutation	C	A	p.G157*
UCEC	TCGA-BS-A0U8-01	TRIM35	ENST00000521283.1,ENST00000305364.4	chr8	27146678:27146797:27147672:27147695:27151596:27151652,	27147673	27147695	27147674	27147674	Nonsense_Mutation	G	A	p.R262_splice
UCEC	TCGA-BS-A0U8-01	GRIP1	ENST00000538164.1,ENST00000535323.1,ENST00000359742.4,ENST00000538211.1,ENST00000398016.3,ENST00000286445.7	chr12	66742958:66743026:66747196:66747343:66765473:66765707,	66747197	66747343	66747238	66747238	Nonsense_Mutation	C	A	p.G988*
UCEC	TCGA-BS-A0U8-01	ACLY	ENST00000352035.2,ENST00000393896.2,ENST00000353196.1,ENST00000537919.1,ENST00000590151.1	chr17	40025295:40025378:40025726:40025840:40027941:40028085,	40025727	40025840	40025822	40025822	Nonsense_Mutation	G	A	p.R986*
UCEC	TCGA-BS-A0U8-01	DDX39A	ENST00000586558.1	chr19	14522371:14522410:14523362:14524036:14530081:14530135,	14523363	14524036	14523389	14523389	Nonsense_Mutation	G	A	p.Q104*
UCEC	TCGA-BS-A0U9-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039206	49039206	Nonsense_Mutation	C	T	p.Q762*
UCEC	TCGA-BS-A0U9-01	DDX42	ENST00000578681.1	chr17	61851566:61851736:61864393:61864630:61869771:61869864,61852467:61852538:61864393:61864630:61869771:61869864,	61864394	61864630	61864561	61864561	Nonsense_Mutation	C	A	p.S51*
UCEC	TCGA-BS-A0UL-01	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297817	139297817	Nonsense_Mutation	G	A	p.R64*
UCEC	TCGA-BS-A0UL-01	TBC1D14	ENST00000467966.1,ENST00000409757.4,ENST00000410031.1,ENST00000448507.1,ENST00000451522.2	chr4	6995935:6996029:6998051:6998134:7000811:7000929,	6998052	6998134	6998131	6998131	Nonsense_Mutation	C	T	p.R348*
UCEC	TCGA-BS-A0UL-01	MYO1G	ENST00000488554.1,ENST00000495831.1,ENST00000258787.7	chr7	45005235:45005459:45005671:45005879:45006270:45006437,	45005672	45005879	45005713	45005713	Nonsense_Mutation	G	A	p.R706*
UCEC	TCGA-BS-A0UL-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100029103	100029103	Nonsense_Mutation	C	T	p.R488*
UCEC	TCGA-BS-A0UL-01	SEPT5	ENST00000412544.1,ENST00000455843.1,ENST00000455784.2,ENST00000383045.3,ENST00000470814.1,ENST00000431044.1	chr22	19708290:19708392:19709162:19709259:19709344:19709480,	19709163	19709259	19709217	19709217	Nonsense_Mutation	C	T	p.Q258*
UCEC	TCGA-BS-A0UL-01	AKAP17A	ENST00000313871.3	chrX	1714276:1714425:1718084:1718325:1719551:1721395,	1718085	1718325	1718128	1718128	Nonsense_Mutation	G	T	p.E319*
UCEC	TCGA-BS-A0UM-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097630	27097630	Nonsense_Mutation	G	A	p.W1073*
UCEC	TCGA-BS-A0UM-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211018389	211018389	Nonsense_Mutation	C	T	p.W306*
UCEC	TCGA-BS-A0UM-01	SHROOM3	ENST00000473602.1,ENST00000486758.1,ENST00000296043.6,ENST00000481002.1	chr4	77631308:77631440:77651956:77652088:77670169:77670243,77631308:77631440:77651956:77652088:77659913:77659988,	77651957	77652088	77651990	77651990	Nonsense_Mutation	G	A	p.W163*
UCEC	TCGA-BS-A0UM-01	API5	ENST00000420461.2,ENST00000378852.3,ENST00000534600.1,ENST00000531273.1,ENST00000455725.2	chr11	43344979:43345186:43348056:43348161:43349338:43349428,	43348057	43348161	43348099	43348099	Nonsense_Mutation	C	T	p.Q265*
UCEC	TCGA-BS-A0UM-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827658	72827658	Nonsense_Mutation	C	A	p.E2975*
UCEC	TCGA-BS-A0UM-01	MED13	ENST00000397786.2	chr17	60033699:60033842:60038227:60038451:60038948:60039140,	60038228	60038451	60038436	60038436	Nonsense_Mutation	G	A	p.R1758*
UCEC	TCGA-BS-A0UM-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60088344	60088344	Nonsense_Mutation	G	A	p.R512*
UCEC	TCGA-BS-A0UM-01	RBMX	ENST00000464781.1,ENST00000565438.1,ENST00000568578.1,ENST00000419968.2,ENST00000562646.1,ENST00000570135.1,ENST00000320676.7	chrX	135957416:135957542:135957629:135957744:135958661:135958814,	135957630	135957744	135957703	135957703	Nonsense_Mutation	G	A	p.R195*
UCEC	TCGA-BS-A0UT-01	EIF3E	ENST00000521614.1,ENST00000522352.1,ENST00000220849.5,ENST00000519030.1	chr8	109214093:109214152:109215211:109215346:109215629:109215732,	109215212	109215346	109215229	109215229	Nonsense_Mutation	G	A	p.Q428*
UCEC	TCGA-BS-A0V6-01	SIDT1	ENST00000463226.1,ENST00000393830.3,ENST00000264852.4	chr3	113342469:113342580:113344948:113345062:113346492:113346688,	113344949	113345062	113344982	113344982	Nonsense_Mutation	G	T	p.E786*
UCEC	TCGA-BS-A0V6-01	AFF4	ENST00000265343.5	chr5	132211070:132216878:132219031:132219252:132220767:132220811,	132219032	132219252	132219211	132219211	Nonsense_Mutation	G	T	p.S1062*
UCEC	TCGA-D1-A0ZO-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050825	202050825	Nonsense_Mutation	C	T	p.R109*
UCEC	TCGA-D1-A0ZO-01	CCNC	ENST00000520371.1,ENST00000524049.1,ENST00000523799.1,ENST00000520429.1,ENST00000484049.2,ENST00000518714.1,ENST00000326298.4,ENST00000523961.1,ENST00000486428.2,ENST00000523985.1	chr6	99997383:99997451:99998093:99998185:99998868:99998904,	99998094	99998185	99998180	99998180	Nonsense_Mutation	A	T	p.C148*
UCEC	TCGA-D1-A0ZO-01	CA1	ENST00000517590.1,ENST00000517618.1,ENST00000523858.1,ENST00000521846.1,ENST00000523022.1,ENST00000523953.1,ENST00000542576.1,ENST00000522814.1,ENST00000522579.1,ENST00000256119.5,ENST00000431316.1,ENST00000432364.2,ENST00000522662.1	chr8	86249230:86249292:86250480:86250678:86253827:86253888,	86250481	86250678	86250541	86250541	Nonsense_Mutation	C	A	p.E59*
UCEC	TCGA-D1-A0ZO-01	ATF7IP	ENST00000544627.1,ENST00000541654.1,ENST00000540793.1,ENST00000543189.1,ENST00000538511.1,ENST00000537653.1,ENST00000536444.1,ENST00000539659.1,ENST00000261168.4	chr12	14589128:14589185:14591063:14591201:14599921:14599964,	14591064	14591201	14591145	14591145	Nonsense_Mutation	C	T	p.R625*
UCEC	TCGA-D1-A0ZO-01	SART3	ENST00000431469.2	chr12	108931263:108931371:108931840:108931979:108932720:108932865,108930483:108930561:108931840:108931979:108932709:108932865,	108931841	108931979	108931976	108931976	Nonsense_Mutation	G	A	p.R356*
UCEC	TCGA-D1-A0ZO-01	UNK	ENST00000293218.3,ENST00000589666.1	chr17	73780942:73781065:73805840:73806050:73808192:73808369,	73805841	73806050	73805899	73805899	Nonsense_Mutation	C	T	p.Q131*
UCEC	TCGA-D1-A0ZR-01	EIF3E	ENST00000521614.1,ENST00000522352.1,ENST00000220849.5,ENST00000519030.1	chr8	109214093:109214152:109215211:109215346:109215629:109215732,	109215212	109215346	109215229	109215229	Nonsense_Mutation	G	A	p.Q428*
UCEC	TCGA-D1-A0ZR-01	KIAA0556	ENST00000261588.4	chr16	27561472:27561498:27585221:27585277:27629745:27629822,	27585222	27585277	27585233	27585233	Nonsense_Mutation	C	T	p.R7*
UCEC	TCGA-D1-A0ZS-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157517298:157517449:157519944:157520041:157521838:157522622,	157519945	157520041	157520006	157520006	Nonsense_Mutation	G	T	p.G1346*
UCEC	TCGA-D1-A0ZS-01	YKT6	ENST00000223369.2	chr7	44247734:44247797:44250621:44250723:44251845:44252194,	44250622	44250723	44250649	44250649	Nonsense_Mutation	C	T	p.R163*
UCEC	TCGA-D1-A0ZS-01	ZEB1	ENST00000424869.1,ENST00000561061.1,ENST00000560196.1,ENST00000558655.1,ENST00000361642.5,ENST00000446923.2,ENST00000559476.1,ENST00000561304.1,ENST00000606671.1,ENST00000437844.2,ENST00000559496.1,ENST00000488625.2	chr10	31749965:31750166:31784704:31784767:31791275:31791334,	31784705	31784767	31784758	31784758	Nonsense_Mutation	G	T	p.G104*
UCEC	TCGA-D1-A0ZS-01	ZEB1	ENST00000557827.1,ENST00000320985.10,ENST00000559858.1,ENST00000561212.1,ENST00000542879.1,ENST00000606161.1	chr10	31749965:31750166:31784707:31784767:31791275:31791334,	31784708	31784767	31784758	31784758	Nonsense_Mutation	G	T	p.G104*
UCEC	TCGA-D1-A0ZS-01	LRP6	ENST00000543091.1,ENST00000261349.4,ENST00000538239.1	chr12	12288108:12288234:12291258:12291468:12300299:12300490,	12291259	12291468	12291316	12291316	Nonsense_Mutation	G	A	p.R1184*
UCEC	TCGA-D1-A0ZS-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14576892	14576892	Nonsense_Mutation	C	T	p.R15*
UCEC	TCGA-D1-A0ZV-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645168	67645168	Nonsense_Mutation	G	T	p.E145*
UCEC	TCGA-D1-A0ZZ-01	FLNA	ENST00000369856.3,ENST00000438732.1	chrX	153581921:153582095:153582282:153582411:153582518:153582659,153581663:153581825:153582282:153582411:153582518:153582659,	153582283	153582411	153582383	153582383	Nonsense_Mutation	G	T	p.Y1862*
UCEC	TCGA-D1-A101-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000474446.1	chr1	182848384:182848545:182849631:182849743:182850398:182850560,	182849632	182849743	182849676	182849676	Nonsense_Mutation	C	T	p.R853*
UCEC	TCGA-D1-A101-01	TP53I3	ENST00000238721.4,ENST00000335934.4	chr2	24300503:24300631:24302313:24302510:24303688:24303901,	24302314	24302510	24302358	24302358	Nonsense_Mutation	G	A	p.R258*
UCEC	TCGA-D1-A101-01	FOXN2	ENST00000413569.1,ENST00000340553.3	chr2	48586185:48586286:48589781:48589846:48600430:48600467,	48589782	48589846	48589834	48589834	Nonsense_Mutation	C	T	p.R231*
UCEC	TCGA-D1-A101-01	SLMAP	ENST00000416870.1,ENST00000438794.1,ENST00000494088.1,ENST00000466255.1	chr3	57893610:57893733:57894802:57894877:57898107:57898162,57882599:57882659:57894802:57894877:57898107:57898162,	57894803	57894877	57894832	57894832	Nonsense_Mutation	C	T	p.R535*
UCEC	TCGA-D1-A101-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057971	145057971	Nonsense_Mutation	G	A	p.R596*
UCEC	TCGA-D1-A101-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057971	145057971	Nonsense_Mutation	G	A	p.R596*
UCEC	TCGA-D1-A101-01	GRHPR	ENST00000491488.1,ENST00000460882.1,ENST00000318158.6,ENST00000607784.1,ENST00000377824.4	chr9	37428480:37428569:37429728:37429833:37430507:37430643,	37429729	37429833	37429767	37429767	Nonsense_Mutation	C	T	p.Q178*
UCEC	TCGA-D1-A101-01	NEBL	ENST00000377122.4,ENST00000377119.1	chr10	21157592:21157694:21158668:21158770:21169722:21169833,	21158669	21158770	21158716	21158716	Nonsense_Mutation	G	A	p.R179*
UCEC	TCGA-D1-A101-01	SORBS1	ENST00000486141.2,ENST00000371239.1,ENST00000353505.5,ENST00000361941.3,ENST00000347291.4,ENST00000393949.1,ENST00000371245.3,ENST00000474353.2,ENST00000465489.1,ENST00000371249.2,ENST00000371246.2,ENST00000277982.5,ENST00000371247.2,ENST00000354106.3,ENST00000371227.4,ENST00000306402.6,ENST00000371241.1	chr10	97158773:97158946:97165874:97165904:97170389:97170534,	97165875	97165904	97165893	97165893	Nonsense_Mutation	G	A	p.R323*
UCEC	TCGA-D1-A101-01	IGSF22	ENST00000513874.1,ENST00000504981.1	chr11	18732201:18732375:18733628:18733931:18735398:18735695,	18733629	18733931	18733914	18733914	Nonsense_Mutation	G	A	p.Q705*
UCEC	TCGA-D1-A101-01	METTL15	ENST00000407364.3,ENST00000342303.5,ENST00000303459.6,ENST00000451385.2	chr11	28232608:28232745:28311752:28311944:28318343:28318478,28232608:28232745:28311752:28311944:28318299:28318478,	28311753	28311944	28311757	28311757	Nonsense_Mutation	C	T	p.Q138*
UCEC	TCGA-D1-A101-01	HIF1A	ENST00000394997.1	chr14	62162494:62162557:62187096:62187290:62188226:62188372,	62187097	62187290	62187131	62187131	Nonsense_Mutation	C	T	p.R23*
UCEC	TCGA-D1-A101-01	HIF1A	ENST00000337138.4,ENST00000323441.6	chr14	62162494:62162557:62187099:62187290:62188226:62188372,	62187100	62187290	62187131	62187131	Nonsense_Mutation	C	T	p.R23*
UCEC	TCGA-D1-A101-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48221300:48221338:48226430:48226628:48227789:48227893,	48226431	48226628	48226616	48226616	Nonsense_Mutation	G	A	p.R841*
UCEC	TCGA-D1-A101-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72832266	72832266	Nonsense_Mutation	G	A	p.R1439*
UCEC	TCGA-D1-A101-01	COX4I1	ENST00000561569.1,ENST00000563774.1	chr16	85833313:85833358:85834789:85834884:85838542:85838598,	85834790	85834884	85834875	85834875	Nonsense_Mutation	C	T	p.R22*
UCEC	TCGA-D1-A101-01	COX4I1	ENST00000568339.1,ENST00000253452.2,ENST00000570123.1,ENST00000564544.1,ENST00000568794.1	chr16	85833313:85833358:85834810:85834884:85838542:85838598,	85834811	85834884	85834875	85834875	Nonsense_Mutation	C	T	p.R22*
UCEC	TCGA-D1-A101-01	FMR1	ENST00000370470.1	chrX	147022099:147022181:147024650:147024846:147026388:147026571,147022099:147022181:147024650:147024846:147026424:147026571,147022099:147022181:147024650:147024846:147026463:147026571,	147024651	147024846	147024699	147024699	Nonsense_Mutation	C	T	p.R442*
UCEC	TCGA-D1-A163-01	WDR35	ENST00000281405.4,ENST00000345530.3,ENST00000414212.1	chr2	20113318:20113469:20113797:20114038:20130156:20130313,	20113798	20114038	20113883	20113883	Nonsense_Mutation	G	A	p.Q1104*
UCEC	TCGA-D1-A163-01	RAB1A	ENST00000409784.3	chr2	65316072:65316204:65318116:65318212:65331867:65331940,65316072:65316204:65318116:65318212:65325104:65325198,	65318117	65318212	65318185	65318185	Nonsense_Mutation	G	A	p.R74*
UCEC	TCGA-D1-A163-01	ABCB1	ENST00000265724.3	chr7	87195385:87195557:87196100:87196292:87199487:87199539,	87196101	87196292	87196162	87196162	Nonsense_Mutation	G	A	p.R157*
UCEC	TCGA-D1-A163-01	ZYX	ENST00000322764.5,ENST00000449423.2,ENST00000354434.4,ENST00000392910.2	chr7	143080092:143080415:143085311:143085432:143085581:143085593,	143085312	143085432	143085432	143085432	Nonsense_Mutation	G	T	p.E382_splice
UCEC	TCGA-D1-A163-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112065826	112065826	Nonsense_Mutation	G	A	p.R177*
UCEC	TCGA-D1-A165-01	BLZF1	ENST00000367808.3,ENST00000426663.1,ENST00000329281.2	chr1	169345777:169346217:169347567:169347767:169349718:169349800,	169347568	169347767	169347745	169347745	Nonsense_Mutation	C	T	p.R216*
UCEC	TCGA-D1-A169-01	PIGR	ENST00000356495.4	chr1	207110986:207111096:207112463:207112808:207113833:207113929,	207112464	207112808	207112528	207112528	Nonsense_Mutation	G	T	p.Y108*
UCEC	TCGA-D1-A169-01	FKBP15	ENST00000446284.1,ENST00000414250.1,ENST00000238256.3	chr9	115956306:115956449:115959211:115959358:115961134:115961203,	115959212	115959358	115959316	115959316	Nonsense_Mutation	G	A	p.R254*
UCEC	TCGA-D1-A169-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55338699:55338812:55342065:55342254:55351267:55351424,	55342066	55342254	55342081	55342081	Nonsense_Mutation	G	A	p.R602*
UCEC	TCGA-D1-A16B-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491583	107491583	Nonsense_Mutation	G	T	p.E339*
UCEC	TCGA-D1-A16B-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-D1-A16D-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-D1-A16E-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000522756.1,ENST00000423620.2	chr8	95674728:95674783:95676924:95677035:95677154:95677287,	95676925	95677035	95676982	95676982	Nonsense_Mutation	G	A	p.W234*
UCEC	TCGA-D1-A16E-01	ST5	ENST00000526099.1,ENST00000534127.1,ENST00000526757.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1,ENST00000533020.1	chr11	8732672:8732778:8734097:8734282:8735544:8735589,	8734098	8734282	8734139	8734139	Nonsense_Mutation	G	A	p.R711*
UCEC	TCGA-D1-A16I-01	SUFU	ENST00000369902.3	chr10	104375024:104375159:104377046:104377185:104386931:104387000,	104377047	104377185	104377063	104377063	Nonsense_Mutation	G	T	p.G392*
UCEC	TCGA-D1-A16I-01	ATP9B	ENST00000426216.2,ENST00000458297.2,ENST00000586366.1,ENST00000307671.7,ENST00000586722.1	chr18	76829489:76829529:76856475:76856649:76870354:76870505,	76856476	76856649	76856486	76856486	Nonsense_Mutation	G	T	p.E44*
UCEC	TCGA-D1-A16J-01	IFI16	ENST00000483916.1	chr1	159015086:159015254:159021468:159023514:159024610:159024914,159019221:159019389:159021468:159023514:159024610:159024914,	159021469	159023514	159023419	159023419	Nonsense_Mutation	G	T	p.E672*
UCEC	TCGA-D1-A16J-01	IFI16	ENST00000430894.2,ENST00000562225.1,ENST00000368131.4,ENST00000359709.3,ENST00000340979.6,ENST00000368132.3,ENST00000448393.2,ENST00000295809.7	chr1	159021479:159021888:159023322:159023514:159024610:159024914,	159023323	159023514	159023419	159023419	Nonsense_Mutation	G	T	p.E672*
UCEC	TCGA-D1-A16J-01	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11236802:11236935:11346483:11346739:11364807:11365002,	11346484	11346739	11346575	11346575	Nonsense_Mutation	C	A	p.E513*
UCEC	TCGA-D1-A16J-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167849012:167849102:167850537:167851073:167855037:167855146,	167850538	167851073	167850639	167850639	Nonsense_Mutation	C	A	p.S459*
UCEC	TCGA-D1-A16J-01	ABCA13	ENST00000484268.1,ENST00000453246.1,ENST00000435803.1	chr7	48416038:48416169:48427418:48427556:48428636:48428817,	48427419	48427556	48427493	48427493	Nonsense_Mutation	G	T	p.E3804*
UCEC	TCGA-D1-A16J-01	AAAS	ENST00000547238.1,ENST00000549821.1,ENST00000547520.1,ENST00000549450.1,ENST00000549983.1,ENST00000547761.2,ENST00000550286.1,ENST00000209873.4	chr12	53708183:53708225:53708534:53708633:53708877:53708911,	53708535	53708633	53708559	53708559	Nonsense_Mutation	G	T	p.S174*
UCEC	TCGA-D1-A16J-01	GLT1D1	ENST00000413816.2,ENST00000542193.1,ENST00000537468.1,ENST00000442111.2,ENST00000281703.6	chr12	129360458:129360607:129373183:129373289:129383780:129383832,	129373184	129373289	129373189	129373189	Nonsense_Mutation	C	T	p.R64*
UCEC	TCGA-D1-A16J-01	ARFGEF2	ENST00000371917.4	chr20	47589782:47589821:47591302:47591411:47592552:47592736,	47591303	47591411	47591368	47591368	Nonsense_Mutation	G	A	p.W577*
UCEC	TCGA-D1-A16J-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073481	33073481	Nonsense_Mutation	G	A	p.Q202*
UCEC	TCGA-D1-A16J-01	NOX1	ENST00000372960.4,ENST00000372966.3,ENST00000217885.5	chrX	100117159:100117292:100117380:100117562:100117657:100117809,	100117381	100117562	100117472	100117472	Nonsense_Mutation	C	A	p.E194*
UCEC	TCGA-D1-A16N-01	PAPOLA	ENST00000556787.1,ENST00000392990.2,ENST00000555626.1,ENST00000554666.1,ENST00000216277.8,ENST00000553689.1	chr14	97008579:97008633:97009110:97009230:97010485:97010595,	97009111	97009230	97009200	97009200	Nonsense_Mutation	C	G	p.S420*
UCEC	TCGA-D1-A16O-01	CPNE9	ENST00000273027.6,ENST00000383832.3,ENST00000383831.3	chr3	9758741:9758788:9759712:9759894:9760158:9760286,	9759713	9759894	9759868	9759868	Nonsense_Mutation	G	T	p.G363*
UCEC	TCGA-D1-A16Q-01	HPS5	ENST00000352460.3	chr11	18309439:18309560:18312988:18313566:18314445:18314523,18309439:18309560:18312988:18313566:18316566:18316716,	18312989	18313566	18313393	18313393	Nonsense_Mutation	G	T	p.S679*
UCEC	TCGA-D1-A16Q-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655479	67655479	Nonsense_Mutation	C	T	p.R448*
UCEC	TCGA-D1-A16Q-01	NFIX	ENST00000587260.1,ENST00000397661.2,ENST00000587760.1	chr19	13186348:13186485:13192493:13192669:13201112:13201204,13189426:13189549:13192493:13192669:13201112:13201204,	13192494	13192669	13192667	13192667	Nonsense_Mutation	C	T	p.Q426*
UCEC	TCGA-D1-A16Q-01	MORC4	ENST00000355610.4,ENST00000535534.1,ENST00000255495.7	chrX	106198142:106198318:106199709:106199764:106200165:106200234,	106199710	106199764	106199721	106199721	Nonsense_Mutation	C	A	p.E500*
UCEC	TCGA-D1-A16R-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139629156:139629201:139631697:139631751:139635974:139636028,	139631698	139631751	139631709	139631709	Nonsense_Mutation	G	A	p.R1272*
UCEC	TCGA-D1-A16R-01	RXFP2	ENST00000380314.1,ENST00000298386.2	chr13	32363258:32363330:32365942:32366172:32366814:32367225,	32365943	32366172	32365986	32365986	Nonsense_Mutation	C	T	p.R397*
UCEC	TCGA-D1-A16S-01	RIOK2	ENST00000283109.3	chr5	96498639:96498929:96500754:96500851:96503170:96503281,	96500755	96500851	96500768	96500768	Nonsense_Mutation	G	T	p.S494*
UCEC	TCGA-D1-A174-01	MTF2	ENST00000545708.1,ENST00000471953.1,ENST00000476037.1,ENST00000540243.1,ENST00000370298.4,ENST00000467953.1,ENST00000487263.1	chr1	93592788:93592856:93594834:93595005:93599259:93599297,	93594835	93595005	93594884	93594884	Nonsense_Mutation	C	T	p.R347*
UCEC	TCGA-D1-A174-01	ACBD3	ENST00000366812.5	chr1	226342347:226342534:226346884:226347059:226349231:226349273,	226346885	226347059	226346995	226346995	Nonsense_Mutation	G	A	p.Q265*
UCEC	TCGA-D1-A174-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604254	111604254	Nonsense_Mutation	C	T	p.R444*
UCEC	TCGA-D1-A174-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176636892	176636892	Nonsense_Mutation	C	T	p.R498*
UCEC	TCGA-D1-A174-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580324	7580324	Nonsense_Mutation	C	T	p.Q1301*
UCEC	TCGA-D1-A174-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000393824.3	chr7	101740643:101740781:101747615:101747739:101754977:101755006,	101747616	101747739	101747648	101747648	Nonsense_Mutation	C	T	p.R158*
UCEC	TCGA-D1-A174-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000520845.1,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95866032:95866143:95869004:95869206:95871738:95871860,	95869005	95869206	95869023	95869023	Nonsense_Mutation	C	T	p.Q591*
UCEC	TCGA-D1-A174-01	FBXW2	ENST00000474117.1,ENST00000453291.1,ENST00000608872.1	chr9	123538370:123538504:123540628:123540823:123550046:123550464,	123540629	123540823	123540779	123540779	Nonsense_Mutation	G	A	p.Q211*
UCEC	TCGA-D1-A174-01	GBF1	ENST00000369983.3	chr10	104119940:104120152:104120778:104120877:104121474:104121669,	104120779	104120877	104120821	104120821	Nonsense_Mutation	C	T	p.R478*
UCEC	TCGA-D1-A174-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3,ENST00000566179.1	chr16	71787735:71787790:71789921:71790062:71792710:71792824,	71789922	71790062	71790016	71790016	Nonsense_Mutation	G	A	p.R379*
UCEC	TCGA-D1-A174-01	MED13	ENST00000397786.2	chr17	60050087:60050249:60059558:60060475:60061531:60061728,	60059559	60060475	60060273	60060273	Nonsense_Mutation	G	A	p.Q1031*
UCEC	TCGA-D1-A174-01	DLL3	ENST00000600437.1,ENST00000205143.4,ENST00000356433.5	chr19	39993454:39993697:39994710:39994928:39995868:39996091,	39994711	39994928	39994719	39994719	Nonsense_Mutation	C	T	p.R221*
UCEC	TCGA-D1-A176-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26090364:26090458:26098147:26098263:26104595:26104815,	26098148	26098263	26098157	26098157	Nonsense_Mutation	C	G	p.S384*
UCEC	TCGA-D1-A176-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115261233:115261366:115262199:115262363:115263159:115263338,	115262200	115262363	115262208	115262208	Nonsense_Mutation	C	T	p.W782*
UCEC	TCGA-D1-A176-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32474675:32476670:32477487:32477748:32481843:32481962,	32477488	32477748	32477560	32477560	Nonsense_Mutation	C	A	p.E64*
UCEC	TCGA-D1-A176-01	PPP1R7	ENST00000491715.1,ENST00000234038.6,ENST00000272983.8,ENST00000423280.1,ENST00000407025.1,ENST00000450367.1	chr2	242105755:242105856:242109195:242109282:242122061:242122155,	242109196	242109282	242109265	242109265	Nonsense_Mutation	G	T	p.E297*
UCEC	TCGA-D1-A176-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897387	36897387	Nonsense_Mutation	C	A	p.G1232*
UCEC	TCGA-D1-A176-01	NSUN2	ENST00000506139.1	chr5	6623326:6623398:6625676:6625782:6631985:6632090,6623326:6623398:6625676:6625782:6632711:6632869,	6625677	6625782	6625761	6625761	Nonsense_Mutation	C	T	p.W127*
UCEC	TCGA-D1-A176-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000522756.1,ENST00000423620.2	chr8	95674728:95674783:95676924:95677035:95677154:95677287,	95676925	95677035	95676982	95676982	Nonsense_Mutation	G	A	p.W234*
UCEC	TCGA-D1-A176-01	THSD1	ENST00000258613.4	chr13	52951321:52952924:52960162:52960321:52971366:52972329,	52960163	52960321	52960305	52960305	Nonsense_Mutation	C	T	p.W346*
UCEC	TCGA-D1-A176-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61271354:61271500:61278131:61278318:61315174:61315438,	61278132	61278318	61278257	61278257	Nonsense_Mutation	C	A	p.C162*
UCEC	TCGA-D1-A177-01	EIF2A	ENST00000494558.1	chr3	150276174:150276249:150281301:150281401:150282085:150282164,	150281302	150281401	150281337	150281337	Nonsense_Mutation	C	T	p.Q110*
UCEC	TCGA-D1-A177-01	RAD1	ENST00000325577.4	chr5	34911722:34911917:34914799:34915066:34915520:34915609,	34914800	34915066	34914820	34914820	Nonsense_Mutation	G	A	p.Q60*
UCEC	TCGA-D1-A177-01	TECPR1	ENST00000542604.1	chr7	97870162:97870263:97870381:97870583:97872778:97872904,	97870382	97870583	97870551	97870551	Nonsense_Mutation	C	T	p.W221*
UCEC	TCGA-D1-A177-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000463648.1	chr7	97870162:97870263:97870381:97870556:97872778:97872886,	97870382	97870556	97870551	97870551	Nonsense_Mutation	C	T	p.W221*
UCEC	TCGA-D1-A177-01	RARRES2	ENST00000466675.1,ENST00000478771.1,ENST00000223271.3	chr7	150035446:150035528:150035703:150035830:150036074:150036168,	150035704	150035830	150035812	150035812	Nonsense_Mutation	C	A	p.E132*
UCEC	TCGA-D1-A177-01	PPP1R13B	ENST00000202556.9,ENST00000555734.1	chr14	104223986:104224088:104245081:104245158:104251131:104251251,	104245082	104245158	104245150	104245150	Nonsense_Mutation	G	A	p.Q96*
UCEC	TCGA-D1-A177-01	AKAP8	ENST00000269701.2,ENST00000598597.2	chr19	15469777:15469873:15471658:15471789:15472539:15472633,	15471659	15471789	15471715	15471715	Nonsense_Mutation	G	A	p.Q491*
UCEC	TCGA-D1-A17A-01	CROCC	ENST00000375541.5,ENST00000445545.2,ENST00000498688.1	chr1	17273361:17273486:17274825:17275019:17275293:17275421,	17274826	17275019	17275003	17275003	Nonsense_Mutation	G	T	p.E898*
UCEC	TCGA-D1-A17A-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-D1-A17A-01	PCSK6	ENST00000560902.1	chr15	101906400:101906537:101910539:101910728:101922296:101922329,101872056:101872236:101910539:101910728:101922296:101922329,	101910540	101910728	101910712	101910712	Nonsense_Mutation	G	A	p.Q516*
UCEC	TCGA-D1-A17B-01	FBRSL1	ENST00000261673.6,ENST00000434748.2	chr12	133148873:133148924:133149112:133149208:133150675:133150744,133148873:133148930:133149112:133149208:133150904:133150934,	133149113	133149208	133149188	133149188	Nonsense_Mutation	C	T	p.Q522*
UCEC	TCGA-D1-A17B-01	MKS1	ENST00000393120.2,ENST00000546108.1,ENST00000537529.2,ENST00000393119.2	chr17	56283643:56283741:56283825:56283908:56284445:56284579,	56283826	56283908	56283833	56283833	Nonsense_Mutation	G	A	p.Q495*
UCEC	TCGA-D1-A17B-01	FMR1	ENST00000370470.1	chrX	147022099:147022181:147024650:147024846:147026388:147026571,147022099:147022181:147024650:147024846:147026424:147026571,147022099:147022181:147024650:147024846:147026463:147026571,	147024651	147024846	147024699	147024699	Nonsense_Mutation	C	T	p.R442*
UCEC	TCGA-D1-A17C-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1	chr2	159477742:159477933:159481389:159481939:159488264:159488444,	159481390	159481939	159481458	159481458	Nonsense_Mutation	T	A	p.Y224*
UCEC	TCGA-D1-A17C-01	ATP2A2	ENST00000308664.6,ENST00000539276.2,ENST00000548169.2,ENST00000395494.2,ENST00000377685.5	chr12	110783053:110783187:110783805:110783923:110784005:110784126,	110783806	110783923	110783912	110783912	Nonsense_Mutation	G	T	p.E950*
UCEC	TCGA-D1-A17D-01	TLN1	ENST00000314888.9,ENST00000540444.1	chr9	35699352:35699458:35699970:35700078:35700187:35700355,	35699971	35700078	35700036	35700036	Nonsense_Mutation	G	A	p.R2235*
UCEC	TCGA-D1-A17D-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2,ENST00000436441.1	chr9	135152446:135152539:135153456:135153644:135156853:135156961,	135153457	135153644	135153638	135153638	Nonsense_Mutation	G	A	p.Q2221*
UCEC	TCGA-D1-A17D-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717695	89717695	Nonsense_Mutation	C	G	p.Y240*
UCEC	TCGA-D1-A17D-01	XPNPEP1	ENST00000508275.1,ENST00000490740.2,ENST00000423625.1,ENST00000451592.1,ENST00000502935.1,ENST00000369680.4,ENST00000506777.1,ENST00000443078.1,ENST00000322238.8,ENST00000403138.2,ENST00000502595.1	chr10	111648260:111648353:111651479:111651584:111667448:111667573,111648260:111648353:111651479:111651584:111652769:111652833,	111651480	111651584	111651532	111651532	Nonsense_Mutation	G	T	p.Y121*
UCEC	TCGA-D1-A17D-01	ARNTL	ENST00000497429.1,ENST00000396441.3,ENST00000389708.3,ENST00000401424.1,ENST00000361003.4,ENST00000403510.3,ENST00000403290.1,ENST00000389707.4,ENST00000403482.3	chr11	13381891:13381971:13387046:13387139:13388211:13388329,	13387047	13387139	13387107	13387107	Nonsense_Mutation	G	T	p.E174*
UCEC	TCGA-D1-A17D-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829701	72829701	Nonsense_Mutation	G	A	p.R2294*
UCEC	TCGA-D1-A17F-01	FRRS1	ENST00000414213.1,ENST00000287474.5	chr1	100203641:100203824:100206348:100206496:100207734:100207829,	100206349	100206496	100206463	100206463	Nonsense_Mutation	C	T	p.W154*
UCEC	TCGA-D1-A17F-01	DEPDC1B	ENST00000453022.2	chr5	59943224:59943360:59982788:59983054:59995872:59995961,	59982789	59983054	59982947	59982947	Nonsense_Mutation	C	T	p.W52*
UCEC	TCGA-D1-A17F-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924339	150924339	Nonsense_Mutation	G	A	p.R2117*
UCEC	TCGA-D1-A17F-01	DIS3L	ENST00000530537.1,ENST00000319194.5,ENST00000319212.4	chr15	66615830:66615923:66618168:66618702:66621307:66621462,	66618169	66618702	66618428	66618428	Nonsense_Mutation	C	T	p.R643*
UCEC	TCGA-D1-A17H-01	ELAVL4	ENST00000448907.2,ENST00000371821.1,ENST00000371823.4,ENST00000371819.1,ENST00000357083.4,ENST00000371827.1,ENST00000371824.1	chr1	50610628:50610869:50642760:50642864:50659436:50659590,	50642761	50642864	50642763	50642763	Nonsense_Mutation	C	T	p.Q85*
UCEC	TCGA-D1-A17H-01	CD160	ENST00000401557.3,ENST00000369288.2	chr1	145698952:145699090:145704016:145704343:145706685:145706827,	145704017	145704343	145704302	145704302	Nonsense_Mutation	G	A	p.R39*
UCEC	TCGA-D1-A17H-01	EGFLAM	ENST00000397210.3,ENST00000354891.3,ENST00000508868.1	chr5	38445780:38445804:38448402:38448481:38451416:38451560,	38448403	38448481	38448429	38448429	Nonsense_Mutation	C	T	p.Q839*
UCEC	TCGA-D1-A17H-01	EGFLAM	ENST00000506135.1	chr5	38445780:38445804:38448402:38448521:38451416:38451560,	38448403	38448521	38448429	38448429	Nonsense_Mutation	C	T	p.Q839*
UCEC	TCGA-D1-A17H-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000436908.1,ENST00000455112.2,ENST00000448002.2	chr7	102495223:102495307:102517913:102518040:102518777:102518897,	102517914	102518040	102518012	102518012	Nonsense_Mutation	G	A	p.R513*
UCEC	TCGA-D1-A17H-01	MTBP	ENST00000305949.1	chr8	121502702:121502810:121509632:121509794:121514731:121514849,	121509633	121509794	121509638	121509638	Nonsense_Mutation	C	T	p.R485*
UCEC	TCGA-D1-A17H-01	PBX3	ENST00000373492.2,ENST00000373483.2,ENST00000373482.2	chr9	128510828:128510902:128691933:128692124:128697750:128697810,	128691934	128692124	128691973	128691973	Nonsense_Mutation	C	T	p.R186*
UCEC	TCGA-D1-A17H-01	KLF6	ENST00000497571.1	chr10	3821741:3821782:3822297:3822421:3823986:3824243,3821741:3821782:3822297:3822421:3823832:3824406,	3822298	3822421	3822344	3822344	Nonsense_Mutation	G	A	p.R252*
UCEC	TCGA-D1-A17H-01	DDX21	ENST00000354185.4	chr10	70733300:70733420:70734425:70734499:70737284:70737444,	70734426	70734499	70734426	70734426	Nonsense_Mutation	G	T	p.G557_splice
UCEC	TCGA-D1-A17H-01	VWA2	ENST00000603594.1,ENST00000298715.4,ENST00000392982.3	chr10	116044621:116044729:116045697:116046270:116048696:116049248,	116045698	116046270	116046111	116046111	Nonsense_Mutation	C	T	p.R471*
UCEC	TCGA-D1-A17H-01	PAK1	ENST00000528203.1,ENST00000356341.3,ENST00000530617.1,ENST00000278568.4	chr11	77064580:77064644:77066712:77066887:77069942:77069998,	77066713	77066887	77066713	77066713	Nonsense_Mutation	G	A	p.R258_splice
UCEC	TCGA-D1-A17H-01	RAB5B	ENST00000360299.5,ENST00000546810.1,ENST00000448789.2	chr12	56367884:56367923:56380652:56380907:56383730:56383868,	56380653	56380907	56380874	56380874	Nonsense_Mutation	C	T	p.Q44*
UCEC	TCGA-D1-A17L-01	ATRIP	ENST00000346691.4,ENST00000454733.1,ENST00000320211.3,ENST00000357105.6,ENST00000424906.1,ENST00000412052.1	chr3	48500761:48500853:48501185:48501315:48501508:48501561,	48501186	48501315	48501272	48501272	Nonsense_Mutation	G	T	p.E338*
UCEC	TCGA-D1-A17M-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126710226:126710409:126722172:126722313:126723453:126723554,	126722173	126722313	126722311	126722311	Nonsense_Mutation	C	T	p.Q506*
UCEC	TCGA-D1-A17M-01	EGF	ENST00000503392.1,ENST00000265171.5,ENST00000509793.1	chr4	110885556:110885693:110890126:110890275:110895858:110895963,	110890127	110890275	110890263	110890263	Nonsense_Mutation	G	A	p.W571*
UCEC	TCGA-D1-A17M-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539651	187539651	Nonsense_Mutation	C	A	p.E2697*
UCEC	TCGA-D1-A17M-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022445	11022445	Nonsense_Mutation	C	T	p.R187*
UCEC	TCGA-D1-A17M-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-D1-A17M-01	ACTA2	ENST00000458208.1,ENST00000415557.1,ENST00000480297.1,ENST00000458159.1,ENST00000224784.6	chr10	90703553:90703664:90707014:90707143:90708558:90708710,	90707015	90707143	90707053	90707053	Nonsense_Mutation	C	A	p.E74*
UCEC	TCGA-D1-A17M-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34664174:34664274:34667985:34668231:34670565:34670628,	34667986	34668231	34668056	34668056	Nonsense_Mutation	G	A	p.W78*
UCEC	TCGA-D1-A17M-01	FBXL16	ENST00000324361.5,ENST00000562563.1,ENST00000397621.1	chr16	744657:744697:744991:745076:745414:745923,	744992	745076	745006	745006	Nonsense_Mutation	G	A	p.R405*
UCEC	TCGA-D1-A17M-01	LIG3	ENST00000378526.4,ENST00000593099.1,ENST00000262327.5	chr17	33328275:33328422:33328927:33329123:33329686:33329808,	33328928	33329123	33328949	33328949	Nonsense_Mutation	G	T	p.E834*
UCEC	TCGA-D1-A17M-01	PLCG1	ENST00000373271.1,ENST00000609257.1,ENST00000607954.1	chr20	39802562:39802651:39802766:39802951:39803106:39803179,	39802767	39802951	39802848	39802848	Nonsense_Mutation	C	T	p.R1243*
UCEC	TCGA-D1-A17M-01	PLCG1	ENST00000609821.1,ENST00000244007.3,ENST00000373272.2	chr20	39802562:39802651:39802763:39802951:39803106:39803179,	39802764	39802951	39802848	39802848	Nonsense_Mutation	C	T	p.R1243*
UCEC	TCGA-D1-A17N-01	GTF2IRD1	ENST00000265755.3	chr7	73969503:73969553:73969722:73969824:73971968:73972052,	73969723	73969824	73969767	73969767	Nonsense_Mutation	G	T	p.E671*
UCEC	TCGA-D1-A17N-01	PRKCH	ENST00000555906.1,ENST00000332981.5,ENST00000556164.1,ENST00000555082.1,ENST00000553265.1,ENST00000553831.1,ENST00000553830.1,ENST00000557585.1	chr14	61857942:61858006:61909828:61909979:61912409:61912439,	61909829	61909979	61909894	61909894	Nonsense_Mutation	C	T	p.R165*
UCEC	TCGA-D1-A17R-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635227	33635227	Nonsense_Mutation	C	T	p.R671*
UCEC	TCGA-D1-A17S-01	AP1S1	ENST00000443943.1	chr7	100797763:100797798:100799874:100800053:100800657:100800766,	100799875	100800053	100799995	100799995	Nonsense_Mutation	C	T	p.R42*
UCEC	TCGA-D1-A17T-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000412351.1,ENST00000403550.1,ENST00000448568.2,ENST00000421906.1,ENST00000407022.3,ENST00000278893.7,ENST00000433053.1	chr11	62459847:62459945:62460134:62460269:62462039:62462183,	62460135	62460269	62460156	62460156	Nonsense_Mutation	G	T	p.Y248*
UCEC	TCGA-D1-A17T-01	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329276	56329276	Nonsense_Mutation	G	A	p.R89*
UCEC	TCGA-D1-A17U-01	IGSF9	ENST00000361509.3,ENST00000368094.1	chr1	159900939:159901051:159901242:159901393:159901601:159901718,	159901243	159901393	159901336	159901336	Nonsense_Mutation	G	A	p.R474*
UCEC	TCGA-D1-A17U-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	85011845:85011934:85012733:85012880:85014287:85014426,	85012734	85012880	85012776	85012776	Nonsense_Mutation	C	T	p.R3666*
UCEC	TCGA-D1-A17U-01	CNOT6	ENST00000393356.1,ENST00000261951.4	chr5	179976930:179977117:179980385:179980471:179991488:179991578,	179980386	179980471	179980414	179980414	Nonsense_Mutation	C	T	p.R110*
UCEC	TCGA-D1-A17U-01	LACTB2	ENST00000276590.4,ENST00000522447.1	chr8	71550785:71550864:71553136:71553285:71556299:71556363,	71553137	71553285	71553220	71553220	Nonsense_Mutation	G	A	p.R220*
UCEC	TCGA-D1-A17U-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124530710:124530912:124532824:124533003:124534885:124535774,	124532825	124533003	124532972	124532972	Nonsense_Mutation	C	T	p.Q655*
UCEC	TCGA-D1-A17U-01	MAPKBP1	ENST00000456763.2,ENST00000512970.1,ENST00000505373.1,ENST00000260357.7,ENST00000457542.2,ENST00000514566.1,ENST00000221214.6	chr15	42104154:42104325:42104713:42104851:42105116:42105299,	42104714	42104851	42104788	42104788	Nonsense_Mutation	C	G	p.Y191*
UCEC	TCGA-D1-A17U-01	DHX34	ENST00000328771.4,ENST00000486327.2,ENST00000460681.1	chr19	47880356:47880463:47882966:47883242:47884072:47884249,	47882967	47883242	47883072	47883072	Nonsense_Mutation	C	T	p.R938*
UCEC	TCGA-D1-A17U-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21147480:21147531:21150433:21150602:21152871:21152975,	21150434	21150602	21150475	21150475	Nonsense_Mutation	G	A	p.R688*
UCEC	TCGA-D1-A1NU-01	PLD3	ENST00000492243.1	chr19	40872786:40872822:40873507:40873786:40875814:40875865,	40873508	40873786	40873684	40873684	Nonsense_Mutation	G	A	p.W109*
UCEC	TCGA-D1-A1NU-01	PLD3	ENST00000594908.1,ENST00000409735.4,ENST00000409587.1,ENST00000359274.5,ENST00000409281.1,ENST00000356508.5,ENST00000409419.1	chr19	40872786:40872822:40873602:40873786:40875814:40875865,	40873603	40873786	40873684	40873684	Nonsense_Mutation	G	A	p.W109*
UCEC	TCGA-DI-A0WH-01	KIF2C	ENST00000372224.4,ENST00000493027.1,ENST00000372218.4	chr1	45205533:45205674:45206584:45206679:45213055:45213157,	45206585	45206679	45206677	45206677	Nonsense_Mutation	G	T	p.E55*
UCEC	TCGA-DI-A0WH-01	DAP3	ENST00000463295.1	chr1	155701734:155701824:155706796:155706854:155707947:155708320,	155706797	155706854	155706838	155706838	Nonsense_Mutation	G	A	p.W365*
UCEC	TCGA-DI-A0WH-01	DAP3	ENST00000343043.3,ENST00000368336.5,ENST00000421487.2,ENST00000471642.2,ENST00000535183.1	chr1	155701734:155701824:155706736:155706854:155707947:155708320,	155706737	155706854	155706838	155706838	Nonsense_Mutation	G	A	p.W365*
UCEC	TCGA-DI-A0WH-01	LARP1B	ENST00000326639.6,ENST00000503725.1,ENST00000264584.5,ENST00000507259.1,ENST00000354456.3,ENST00000506199.1	chr4	129121748:129121820:129127582:129127692:129128410:129128538,	129127583	129127692	129127662	129127662	Nonsense_Mutation	C	T	p.Q797*
UCEC	TCGA-DI-A0WH-01	PNLDC1	ENST00000275275.5,ENST00000610273.1	chr6	160221305:160221415:160221704:160221861:160222144:160222218,	160221705	160221861	160221854	160221854	Nonsense_Mutation	C	T	p.Q43*
UCEC	TCGA-DI-A0WH-01	PNLDC1	ENST00000392167.3	chr6	160221305:160221415:160221803:160221861:160222144:160222218,	160221804	160221861	160221854	160221854	Nonsense_Mutation	C	T	p.Q43*
UCEC	TCGA-DI-A0WH-01	CLVS1	ENST00000325897.4	chr8	62200538:62200697:62212235:62212841:62289163:62289338,	62212236	62212841	62212627	62212627	Nonsense_Mutation	C	T	p.R81*
UCEC	TCGA-DI-A0WH-01	CLVS1	ENST00000521189.1	chr8	62200538:62200697:62212235:62212837:62289163:62289338,	62212236	62212837	62212627	62212627	Nonsense_Mutation	C	T	p.R81*
UCEC	TCGA-DI-A0WH-01	AHNAK2	ENST00000555122.1,ENST00000333244.5	chr14	105421819:105421970:105422924:105423026:105423746:105423845,	105422925	105423026	105422972	105422972	Nonsense_Mutation	G	A	p.R90*
UCEC	TCGA-DI-A0WH-01	SUPT6H	ENST00000347486.4,ENST00000314616.6	chr17	27027363:27027530:27027958:27028146:27028456:27028557,	27027959	27028146	27027980	27027980	Nonsense_Mutation	C	T	p.Q1610*
UCEC	TCGA-DI-A0WH-01	JUP	ENST00000393930.1,ENST00000393931.3,ENST00000310706.5	chr17	39913885:39914036:39914650:39914770:39914966:39915122,	39914651	39914770	39914743	39914743	Nonsense_Mutation	C	A	p.E561*
UCEC	TCGA-DI-A0WH-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247296	45247296	Nonsense_Mutation	C	A	p.G122*
UCEC	TCGA-DI-A0WH-01	TPGS2	ENST00000587129.1	chr18	34376888:34377013:34378411:34378572:34380160:34380225,34366535:34367042:34378411:34378572:34380160:34380225,34366535:34366945:34378411:34378572:34380160:34380225,34362947:34363094:34378411:34378572:34380160:34380225,	34378412	34378572	34378420	34378420	Nonsense_Mutation	G	A	p.Q217*
UCEC	TCGA-DI-A0WH-01	ZNF561	ENST00000424629.1	chr19	9724734:9724779:9727720:9727847:9728296:9728434,9724734:9724779:9727720:9727847:9728766:9728842,9724734:9724779:9727720:9727847:9730107:9730205,	9727721	9727847	9727721	9727721	Nonsense_Mutation	C	A	p.E81_splice
UCEC	TCGA-DI-A0WH-01	ZNF561	ENST00000443819.1	chr19	9724734:9724779:9727720:9727902:9728766:9728842,	9727721	9727902	9727721	9727721	Nonsense_Mutation	C	A	p.E81_splice
UCEC	TCGA-E6-A1LZ-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678369	73678369	Nonsense_Mutation	C	G	p.S1571*
UCEC	TCGA-E6-A1LZ-01	THYN1	ENST00000392595.2,ENST00000392594.3,ENST00000341541.3	chr11	134118181:134118378:134119060:134119156:134119721:134119814,134118702:134118853:134119060:134119156:134119721:134119814,	134119061	134119156	134119068	134119068	Nonsense_Mutation	C	T	p.W158*
UCEC	TCGA-E6-A1LZ-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44921430:44921586:44925702:44925835:44941063:44941209,	44925703	44925835	44925826	44925826	Nonsense_Mutation	C	A	p.E538*
UCEC	TCGA-E6-A1LZ-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891297	2891297	Nonsense_Mutation	C	G	p.S391*
UCEC	TCGA-E6-A1LZ-01	PSG8	ENST00000404209.4,ENST00000406636.3,ENST00000306511.4	chr19	43258484:43258739:43259139:43259418:43262153:43262287,	43259140	43259418	43259296	43259296	Nonsense_Mutation	G	A	p.Q278*
UCEC	TCGA-E6-A1LZ-01	TRIM28	ENST00000253024.5,ENST00000597136.1,ENST00000341753.6,ENST00000600840.1	chr19	59060922:59061017:59061103:59061227:59061315:59061402,	59061104	59061227	59061211	59061211	Nonsense_Mutation	C	A	p.S697*
UCEC	TCGA-E6-A1LZ-01	TRO	ENST00000319167.8,ENST00000445561.1,ENST00000375022.4,ENST00000173898.7	chrX	54948650:54948724:54949010:54950201:54950883:54950988,	54949011	54950201	54950196	54950196	Nonsense_Mutation	C	T	p.R411*
UCEC	TCGA-E6-A1LZ-01	GLRA4	ENST00000480725.1,ENST00000372617.4	chrX	102973984:102974199:102977079:102977220:102978783:102978866,	102977080	102977220	102977164	102977164	Nonsense_Mutation	G	A	p.Q212*
UCEC	TCGA-EO-A1Y5-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078739	117078739	Nonsense_Mutation	C	T	p.W159*
UCEC	TCGA-EO-A1Y5-01	SULT1E1	ENST00000226444.3	chr4	70707707:70707824:70709878:70710059:70713415:70713504,	70709879	70710059	70709963	70709963	Nonsense_Mutation	C	A	p.E230*
UCEC	TCGA-EO-A1Y5-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128410834:128411137:128505576:128505870:128540066:128540241,	128505577	128505870	128505748	128505748	Nonsense_Mutation	G	A	p.R331*
UCEC	TCGA-EO-A1Y5-01	EFHC2	ENST00000343571.3,ENST00000420999.1	chrX	44007910:44008142:44023167:44023273:44035537:44035630,	44023168	44023273	44023170	44023170	Nonsense_Mutation	C	A	p.E716*
UCEC	TCGA-EO-A1Y8-01	GYG1	ENST00000345003.4,ENST00000296048.6,ENST00000483267.1,ENST00000461191.1,ENST00000484197.1,ENST00000492285.2	chr3	148711928:148712064:148714088:148714263:148714528:148714547,	148714089	148714263	148714232	148714232	Nonsense_Mutation	C	G	p.S96*
UCEC	TCGA-FI-A2D2-01	SPAG5	ENST00000321765.5,ENST00000584206.1	chr17	26911350:26911498:26911669:26911763:26912119:26912233,	26911670	26911763	26911706	26911706	Nonsense_Mutation	C	A	p.E709*
UCEC	TCGA-FI-A2EW-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604591	160604591	Nonsense_Mutation	C	T	p.Q264*
UCEC	TCGA-FI-A2EW-01	INPPL1	ENST00000298229.2,ENST00000538751.1,ENST00000541756.1,ENST00000540329.1	chr11	71939770:71939891:71940133:71940274:71940508:71940602,	71940134	71940274	71940256	71940256	Nonsense_Mutation	C	A	p.S214*
UCEC	TCGA-FI-A2EW-01	ERC1	ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1100463:1100488:1136913:1137738:1192329:1192746,1100432:1100653:1136913:1137738:1192329:1192746,	1136914	1137738	1137169	1137169	Nonsense_Mutation	C	T	p.R34*
UCEC	TCGA-FI-A2EW-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784084	54784084	Nonsense_Mutation	G	T	p.S808*
UCEC	TCGA-FI-A2EX-01	PKN3	ENST00000485301.1,ENST00000291906.4	chr9	131479025:131479202:131480603:131480666:131480827:131480904,	131480604	131480666	131480610	131480610	Nonsense_Mutation	C	G	p.Y664*
UCEC	TCGA-FI-A2EX-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830839	61830839	Nonsense_Mutation	G	C	p.S3267*
UCEC	TCGA-BS-A0TA-01	ACAP3	ENST00000479108.1,ENST00000353662.3	chr1	1238589:1238661:1239465:1239523:1243148:1243198,	1239466	1239523	1239505	1239505	Nonsense_Mutation	C	T	p.W38*
UCEC	TCGA-B5-A11E-01	CCNL2	ENST00000497013.1,ENST00000488340.1,ENST00000481223.2,ENST00000496007.1,ENST00000400809.3,ENST00000408918.4,ENST00000425598.2	chr1	1330816:1330894:1333612:1333722:1333976:1334051,	1333613	1333722	1333632	1333632	Nonsense_Mutation	G	A	p.R152*
UCEC	TCGA-D1-A103-01	CDK11A	ENST00000378635.3	chr1	1643702:1643839:1647784:1647917:1650796:1650894,1643702:1643839:1647784:1647917:1650766:1650894,1640956:1641079:1647784:1647917:1650796:1650894,	1647785	1647917	1647897	1647897	Nonsense_Mutation	C	A	p.E126*
UCEC	TCGA-AX-A0J1-01	PANK4	ENST00000435556.3	chr1	2452699:2452754:2453156:2453239:2457902:2458014,	2453157	2453239	2453201	2453201	Nonsense_Mutation	G	A	p.Q55*
UCEC	TCGA-D1-A167-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000294599.4	chr1	3416151:3416280:3416359:3416488:3417196:3417328,	3416360	3416488	3416453	3416453	Nonsense_Mutation	G	A	p.Q915*
UCEC	TCGA-B5-A11E-01	TPRG1L	ENST00000378344.2	chr1	3541987:3542079:3542276:3542453:3544063:3544217,	3542277	3542453	3542422	3542422	Nonsense_Mutation	G	T	p.E147*
UCEC	TCGA-BS-A0UF-01	TPRG1L	ENST00000378344.2	chr1	3541987:3542079:3542276:3542453:3544063:3544217,	3542277	3542453	3542422	3542422	Nonsense_Mutation	G	T	p.E147*
UCEC	TCGA-D1-A16F-01	TP73	ENST00000604566.1,ENST00000378280.1	chr1	3645890:3646012:3647490:3647629:3649310:3649643,3645890:3646012:3647490:3647629:3648026:3648120,	3647491	3647629	3647612	3647612	Nonsense_Mutation	C	T	p.R391*
UCEC	TCGA-B5-A0JY-01	CEP104	ENST00000378230.3	chr1	3745829:3745937:3746354:3746561:3747609:3747786,	3746355	3746561	3746507	3746507	Nonsense_Mutation	G	A	p.R631*
UCEC	TCGA-B5-A0JY-01	CEP104	ENST00000494653.1,ENST00000378230.3,ENST00000378223.3	chr1	3764038:3764177:3765171:3765345:3768858:3768985,	3765172	3765345	3765182	3765182	Nonsense_Mutation	G	A	p.R93*
UCEC	TCGA-BS-A0UF-01	CEP104	ENST00000494653.1,ENST00000378230.3,ENST00000378223.3	chr1	3764038:3764177:3765171:3765345:3768858:3768985,	3765172	3765345	3765296	3765296	Nonsense_Mutation	G	A	p.R55*
UCEC	TCGA-BS-A0UF-01	NPHP4	ENST00000378169.3,ENST00000489180.2,ENST00000378156.4	chr1	6029146:6029319:6038329:6038473:6046214:6046292,	6038330	6038473	6038332	6038332	Nonsense_Mutation	C	A	p.E93*
UCEC	TCGA-AX-A0J0-01	ZBTB48	ENST00000435905.1	chr1	6640147:6640196:6640600:6641359:6642117:6642305,6640076:6640130:6640600:6641359:6642117:6642305,	6640601	6641359	6641117	6641117	Nonsense_Mutation	G	T	p.E150*
UCEC	TCGA-AX-A0J0-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680292	6680292	Nonsense_Mutation	G	T	p.E191*
UCEC	TCGA-B5-A11N-01	PER3	ENST00000361923.2,ENST00000377532.3	chr1	7863110:7863213:7863751:7863908:7868952:7869058,	7863752	7863908	7863904	7863904	Nonsense_Mutation	C	T	p.R377*
UCEC	TCGA-D1-A167-01	EXOSC10	ENST00000544779.1,ENST00000304457.7,ENST00000474216.1,ENST00000376936.4	chr1	11137657:11137708:11139767:11139879:11140555:11140571,	11139768	11139879	11139788	11139788	Nonsense_Mutation	G	A	p.R577*
UCEC	TCGA-AX-A05Z-01	MTOR	ENST00000361445.4	chr1	11205024:11205102:11206732:11206848:11210182:11210283,	11206733	11206848	11206828	11206828	Nonsense_Mutation	C	A	p.E1531*
UCEC	TCGA-AX-A05Z-01	TNFRSF8	ENST00000263932.2,ENST00000413146.2	chr1	12195644:12195670:12198285:12198493:12202343:12204264,	12198286	12198493	12198313	12198313	Nonsense_Mutation	G	T	p.E455*
UCEC	TCGA-AX-A05Z-01	TNFRSF8	ENST00000514649.1,ENST00000417814.2	chr1	12195644:12195670:12198288:12198493:12202343:12204264,	12198289	12198493	12198313	12198313	Nonsense_Mutation	G	T	p.E455*
UCEC	TCGA-B5-A11N-01	VPS13D	ENST00000356315.4,ENST00000496628.1,ENST00000011700.6,ENST00000358136.3	chr1	12445318:12445432:12446243:12446393:12460237:12460387,	12446244	12446393	12446285	12446285	Nonsense_Mutation	T	G	p.L2664*
UCEC	TCGA-AP-A051-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108473	14108473	Nonsense_Mutation	C	T	p.R1395*
UCEC	TCGA-D1-A17F-01	NECAP2	ENST00000406746.1,ENST00000457722.2,ENST00000496239.1,ENST00000504551.2,ENST00000459640.1,ENST00000513161.1,ENST00000492095.1,ENST00000337132.5	chr1	16778341:16778510:16782312:16782388:16785336:16785451,	16782313	16782388	16782332	16782332	Nonsense_Mutation	G	A	p.W229*
UCEC	TCGA-AX-A05Z-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17752036:17752180:17755601:17755695:17764725:17765018,	17755602	17755695	17755626	17755626	Nonsense_Mutation	G	A	p.R119*
UCEC	TCGA-D1-A16X-01	EIF4G3	ENST00000435383.1,ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21151596:21151691:21154109:21154191:21155639:21155765,	21154110	21154191	21154190	21154190	Nonsense_Mutation	C	A	p.E1341*
UCEC	TCGA-AX-A0J0-01	EIF4G3	ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21205815:21206013:21212693:21212864:21220009:21220129,	21212694	21212864	21212819	21212819	Nonsense_Mutation	C	A	p.E711*
UCEC	TCGA-D1-A16X-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268653	21268653	Nonsense_Mutation	G	A	p.R276*
UCEC	TCGA-B5-A0JY-01	ECE1	ENST00000264205.6,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2	chr1	21546451:21546624:21551742:21551933:21553651:21553719,21548239:21548335:21551742:21551933:21553651:21553719,	21551743	21551933	21551890	21551890	Nonsense_Mutation	C	A	p.E91*
UCEC	TCGA-AP-A056-01	USP48	ENST00000400301.1,ENST00000308271.9,ENST00000374732.3	chr1	22033236:22033361:22041881:22041950:22047528:22047639,	22041882	22041950	22041927	22041927	Nonsense_Mutation	C	A	p.E640*
UCEC	TCGA-BS-A0UA-01	USP48	ENST00000529637.1,ENST00000421625.2,ENST00000400301.1,ENST00000308271.9	chr1	22074630:22074764:22077999:22078108:22079019:22079144,	22078000	22078108	22078004	22078004	Nonsense_Mutation	A	T	p.L257*
UCEC	TCGA-B5-A0JY-01	USP48	ENST00000529637.1,ENST00000421625.2,ENST00000400301.1,ENST00000308271.9	chr1	22074630:22074764:22077999:22078108:22079019:22079144,	22078000	22078108	22078089	22078089	Nonsense_Mutation	C	A	p.E229*
UCEC	TCGA-B5-A11E-01	STMN1	ENST00000446334.1,ENST00000357865.2,ENST00000399728.1,ENST00000455785.2,ENST00000374291.1,ENST00000426559.2	chr1	26228102:26228173:26230131:26230304:26231154:26231229,	26230132	26230304	26230230	26230230	Nonsense_Mutation	C	A	p.E30*
UCEC	TCGA-AX-A05Z-01	PDIK1L	ENST00000374269.1	chr1	26438339:26438406:26440782:26441084:26448327:26448615,	26440783	26441084	26440917	26440917	Nonsense_Mutation	C	T	p.R40*
UCEC	TCGA-BG-A0VV-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101135	27101135	Nonsense_Mutation	C	T	p.Q1473*
UCEC	TCGA-D1-A160-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101300	27101300	Nonsense_Mutation	C	T	p.R1528*
UCEC	TCGA-AP-A0LE-01	WDTC1	ENST00000491239.2	chr1	27627716:27627952:27630111:27631684:27632676:27632941,	27630112	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q586*
UCEC	TCGA-AP-A0LE-01	WDTC1	ENST00000361771.3,ENST00000319394.3	chr1	27630111:27630286:27631491:27631684:27632676:27632763,	27631492	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q586*
UCEC	TCGA-AP-A0LE-01	WDTC1	ENST00000447062.2	chr1	27630111:27630286:27631549:27631684:27632676:27632763,	27631550	27631684	27631607	27631607	Nonsense_Mutation	C	T	p.Q586*
UCEC	TCGA-BS-A0UF-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875270	27875270	Nonsense_Mutation	C	T	p.W1119*
UCEC	TCGA-AP-A059-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876868	27876868	Nonsense_Mutation	G	A	p.R587*
UCEC	TCGA-D1-A17Q-01	STX12	ENST00000373943.4,ENST00000440806.2,ENST00000468761.1	chr1	28116072:28116142:28120043:28120143:28128188:28128326,	28120044	28120143	28120102	28120102	Nonsense_Mutation	G	T	p.E83*
UCEC	TCGA-BS-A0UV-01	EYA3	ENST00000373863.3,ENST00000373871.3,ENST00000373864.1,ENST00000436342.2,ENST00000540618.1,ENST00000545175.1	chr1	28304884:28304985:28315045:28315167:28316207:28316322,	28315046	28315167	28315088	28315088	Nonsense_Mutation	C	A	p.E500*
UCEC	TCGA-B5-A11E-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28800065:28800663:28802618:28802803:28806962:28807116,	28802619	28802803	28802770	28802770	Nonsense_Mutation	C	T	p.R535*
UCEC	TCGA-B5-A11E-01	PHACTR4	ENST00000373836.3,ENST00000373839.3	chr1	28815681:28815737:28817462:28817524:28818161:28818299,	28817463	28817524	28817495	28817495	Nonsense_Mutation	C	T	p.R627*
UCEC	TCGA-AX-A0J0-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29342203:29342279:29344735:29344954:29356911:29356999,	29344736	29344954	29344857	29344857	Nonsense_Mutation	G	T	p.E308*
UCEC	TCGA-AP-A0LM-01	PUM1	ENST00000257075.5,ENST00000373741.4,ENST00000440538.2,ENST00000480602.1,ENST00000426105.2,ENST00000525843.1,ENST00000373747.3,ENST00000525948.1	chr1	31468028:31468067:31478699:31478878:31479840:31479946,	31478700	31478878	31478708	31478708	Nonsense_Mutation	C	A	p.G238*
UCEC	TCGA-B5-A11N-01	PUM1	ENST00000526215.1	chr1	31454184:31454252:31479840:31479949:31501642:31501711,	31479841	31479949	31479913	31479913	Nonsense_Mutation	C	A	p.E157*
UCEC	TCGA-B5-A11E-01	TMEM39B	ENST00000476968.1,ENST00000472503.1,ENST00000427288.1,ENST00000336294.5,ENST00000498613.1,ENST00000468135.1,ENST00000487305.1,ENST00000466321.1	chr1	32541267:32541423:32542764:32542919:32557275:32557345,32542363:32542447:32542764:32542919:32557275:32557345,	32542765	32542919	32542858	32542858	Nonsense_Mutation	C	T	p.R177*
UCEC	TCGA-B5-A0JY-01	YARS	ENST00000481895.1,ENST00000373477.4	chr1	33251970:33252048:33252540:33252676:33256762:33256855,	33252541	33252676	33252604	33252604	Nonsense_Mutation	C	A	p.G253*
UCEC	TCGA-BS-A0UV-01	RNF19B	ENST00000235150.4,ENST00000356990.5	chr1	33413822:33413964:33415169:33415375:33429651:33430286,	33415170	33415375	33415182	33415182	Nonsense_Mutation	C	A	p.E277*
UCEC	TCGA-B5-A0JY-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000431916.1,ENST00000426982.2,ENST00000440579.1	chr1	35928221:35928314:35932208:35932296:35940405:35940507,35928221:35928314:35932208:35932296:35936463:35936507,	35932209	35932296	35932241	35932241	Nonsense_Mutation	C	T	p.W219*
UCEC	TCGA-BS-A0UF-01	KIAA0319L	ENST00000431916.1	chr1	35940469:35940507:35944566:35944813:36019950:36020120,35940469:35940507:35944566:35944813:35972212:35972468,35936463:35936561:35944566:35944813:35972212:35972468,	35944567	35944813	35944742	35944742	Nonsense_Mutation	C	A	p.E72*
UCEC	TCGA-B5-A11H-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752570	36752570	Nonsense_Mutation	C	T	p.R247*
UCEC	TCGA-AX-A0J0-01	CSF3R	ENST00000373104.1,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000418048.2,ENST00000361632.4	chr1	36939364:36939488:36940977:36941274:36945033:36945097,	36940978	36941274	36941116	36941116	Nonsense_Mutation	G	A	p.Q75*
UCEC	TCGA-B5-A11E-01	SF3A3	ENST00000448721.2,ENST00000373019.4	chr1	38442555:38442625:38444391:38444499:38444659:38444727,	38444392	38444499	38444393	38444393	Nonsense_Mutation	G	A	p.R312*
UCEC	TCGA-BS-A0UV-01	RHBDL2	ENST00000540558.1	chr1	39381233:39381382:39384638:39385009:39407353:39407456,	39384639	39385009	39384830	39384830	Nonsense_Mutation	C	A	p.E19*
UCEC	TCGA-B5-A0JY-01	MACF1	ENST00000372915.3,ENST00000530262.1,ENST00000539005.1,ENST00000545844.1,ENST00000496804.1,ENST00000317713.7,ENST00000524432.1,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39776502:39776672:39781184:39781363:39782062:39782201,	39781185	39781363	39781299	39781299	Nonsense_Mutation	G	T	p.E1134*
UCEC	TCGA-AP-A0LM-01	MACF1	ENST00000372915.3,ENST00000530262.1,ENST00000539005.1,ENST00000545844.1,ENST00000496804.1,ENST00000317713.7,ENST00000524432.1,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39784124:39784287:39785335:39785419:39788279:39788387,	39785336	39785419	39785404	39785404	Nonsense_Mutation	C	A	p.Y1343*
UCEC	TCGA-BS-A0UF-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800847	39800847	Nonsense_Mutation	G	T	p.E1303*
UCEC	TCGA-BS-A0UV-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39801531	39801531	Nonsense_Mutation	C	T	p.R1531*
UCEC	TCGA-D1-A103-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000567887.1,ENST00000564288.1	chr1	39806475:39806625:39812648:39812882:39815149:39815299,	39812649	39812882	39812757	39812757	Nonsense_Mutation	C	T	p.R2004*
UCEC	TCGA-BS-A0UF-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39833819:39833986:39835701:39835858:39838150:39838268,	39835702	39835858	39835768	39835768	Nonsense_Mutation	G	T	p.E1407*
UCEC	TCGA-AP-A056-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39895498:39895740:39896373:39896580:39898206:39898326,	39896374	39896580	39896382	39896382	Nonsense_Mutation	G	T	p.E2655*
UCEC	TCGA-AX-A05Z-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39895498:39895740:39896373:39896580:39898206:39898326,	39896374	39896580	39896506	39896506	Nonsense_Mutation	C	T	p.Q4195*
UCEC	TCGA-BS-A0UF-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39898206:39898326:39898719:39898827:39900085:39900304,	39898720	39898827	39898741	39898741	Nonsense_Mutation	C	T	p.R4267*
UCEC	TCGA-AX-A06H-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39914265:39914435:39916723:39916883:39917827:39918022,	39916724	39916883	39916826	39916826	Nonsense_Mutation	G	T	p.G3732*
UCEC	TCGA-AP-A0LM-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000446276.1,ENST00000497964.1,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39924794:39924921:39926303:39926466:39927554:39927709,	39926304	39926466	39926452	39926452	Nonsense_Mutation	G	A	p.W4114*
UCEC	TCGA-A5-A0GP-01	PABPC4	ENST00000421687.2,ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000527718.1,ENST00000525669.1,ENST00000470443.1,ENST00000372862.3	chr1	40030970:40031050:40033422:40033518:40034473:40034528,	40033423	40033518	40033458	40033458	Nonsense_Mutation	C	A	p.E313*
UCEC	TCGA-AX-A05Z-01	ZMPSTE24	ENST00000372759.3	chr1	40751596:40751701:40756525:40756669:40758116:40758293,	40756526	40756669	40756571	40756571	Nonsense_Mutation	C	T	p.R369*
UCEC	TCGA-D1-A16X-01	SMAP2	ENST00000372718.3	chr1	40839368:40839895:40872407:40872541:40874324:40874410,	40872408	40872541	40872452	40872452	Nonsense_Mutation	C	T	p.R50*
UCEC	TCGA-AP-A056-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	41984072:41984159:41990405:41990581:42041214:42041360,	41990406	41990581	41990565	41990565	Nonsense_Mutation	C	A	p.E1742*
UCEC	TCGA-AX-A0J1-01	FOXJ3	ENST00000545068.1,ENST00000372573.1,ENST00000361776.1,ENST00000445886.1,ENST00000372572.1,ENST00000361346.1	chr1	42693553:42693637:42730785:42730860:42744018:42744258,	42730786	42730860	42730851	42730851	Nonsense_Mutation	G	A	p.R127*
UCEC	TCGA-D1-A15X-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43909022:43909148:43909267:43909467:43911564:43911655,	43909268	43909467	43909406	43909406	Nonsense_Mutation	C	T	p.Q2023*
UCEC	TCGA-BS-A0UV-01	ST3GAL3	ENST00000372369.1,ENST00000533212.1,ENST00000330208.2,ENST00000530154.1,ENST00000372375.2,ENST00000353126.3,ENST00000332628.6,ENST00000361392.4,ENST00000372368.2,ENST00000533933.1,ENST00000372374.2,ENST00000372365.1,ENST00000372377.4,ENST00000469715.1,ENST00000372362.2,ENST00000533997.1,ENST00000489897.1	chr1	44201933:44202096:44257772:44257820:44280562:44280605,44201933:44202051:44257772:44257820:44280562:44280605,	44257773	44257820	44257776	44257776	Nonsense_Mutation	C	A	p.S56*
UCEC	TCGA-AP-A059-01	ST3GAL3	ENST00000372375.2,ENST00000372372.2,ENST00000372368.2,ENST00000262915.3,ENST00000361746.4,ENST00000351035.3	chr1	44280562:44280605:44290402:44290564:44303890:44303918,	44290403	44290564	44290452	44290452	Nonsense_Mutation	G	T	p.E102*
UCEC	TCGA-AP-A0LM-01	KIF2C	ENST00000372222.3,ENST00000372224.4,ENST00000372217.1,ENST00000455186.1	chr1	45216113:45216236:45218803:45218926:45219404:45219505,	45218804	45218926	45218893	45218893	Nonsense_Mutation	C	T	p.R177*
UCEC	TCGA-B5-A11E-01	KIF2C	ENST00000372222.3,ENST00000372224.4,ENST00000372217.1,ENST00000372218.4	chr1	45226263:45226374:45227587:45227655:45228017:45228123,	45227588	45227655	45227595	45227595	Nonsense_Mutation	C	T	p.R42*
UCEC	TCGA-B5-A0JY-01	EIF2B3	ENST00000372183.3,ENST00000360403.2	chr1	45363026:45363116:45392299:45392411:45407177:45407337,	45392300	45392411	45392331	45392331	Nonsense_Mutation	C	A	p.E179*
UCEC	TCGA-AP-A0LM-01	HECTD3	ENST00000372172.4	chr1	45473911:45473993:45474207:45474373:45474815:45474898,	45474208	45474373	45474272	45474272	Nonsense_Mutation	G	A	p.R392*
UCEC	TCGA-AP-A059-01	UROD	ENST00000491300.1,ENST00000486699.1,ENST00000460334.1,ENST00000473012.1	chr1	45478963:45479026:45479246:45479463:45479580:45479628,	45479247	45479463	45479413	45479413	Nonsense_Mutation	C	T	p.R142*
UCEC	TCGA-AP-A059-01	UROD	ENST00000490385.1,ENST00000494399.1,ENST00000246337.4,ENST00000478467.1,ENST00000491773.1,ENST00000462688.1,ENST00000469548.1	chr1	45478963:45479026:45479265:45479463:45479580:45479628,	45479266	45479463	45479413	45479413	Nonsense_Mutation	C	T	p.R142*
UCEC	TCGA-BS-A0UV-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120874	46120874	Nonsense_Mutation	G	A	p.R60*
UCEC	TCGA-D1-A16X-01	PIK3R3	ENST00000354242.4,ENST00000425892.1,ENST00000420542.1	chr1	46546313:46546422:46597518:46597628:46598455:46598583,	46597519	46597628	46597552	46597552	Nonsense_Mutation	C	A	p.E25*
UCEC	TCGA-B5-A0JY-01	POMGNT1	ENST00000371992.1,ENST00000371986.3	chr1	46654390:46654652:46654913:46655029:46655129:46655239,46654390:46654652:46654913:46655029:46655155:46655239,	46654914	46655029	46654953	46654953	Nonsense_Mutation	C	A	p.E658*
UCEC	TCGA-AP-A056-01	RAD54L	ENST00000442598.1,ENST00000371975.4,ENST00000488942.1,ENST00000459678.1	chr1	46739809:46739888:46740209:46740389:46743488:46743652,	46740210	46740389	46740345	46740345	Nonsense_Mutation	C	T	p.R609*
UCEC	TCGA-B5-A0JY-01	CYP4A22	ENST00000294337.3,ENST00000490948.1,ENST00000371891.3	chr1	47610028:47610135:47610221:47610412:47610508:47610642,	47610222	47610412	47610365	47610365	Nonsense_Mutation	C	A	p.C347*
UCEC	TCGA-B5-A11H-01	SPATA6	ENST00000487543.1	chr1	48869473:48869554:48877135:48877276:48917223:48917272,	48877136	48877276	48877138	48877138	Nonsense_Mutation	G	A	p.R135*
UCEC	TCGA-B5-A11H-01	SPATA6	ENST00000396199.3	chr1	48869473:48869554:48877135:48877260:48917223:48917258,	48877136	48877260	48877138	48877138	Nonsense_Mutation	G	A	p.R135*
UCEC	TCGA-AX-A0J0-01	TTC39A	ENST00000371750.5,ENST00000431927.1,ENST00000413473.2,ENST00000262675.7,ENST00000447632.2,ENST00000451380.1	chr1	51760129:51760183:51761750:51761842:51767243:51767306,	51761751	51761842	51761752	51761752	Nonsense_Mutation	G	A	p.R386*
UCEC	TCGA-AP-A051-01	OSBPL9	ENST00000447887.1,ENST00000495776.1,ENST00000531819.1,ENST00000528603.1,ENST00000489990.1,ENST00000475697.1,ENST00000435274.2,ENST00000462759.1,ENST00000530544.1,ENST00000486942.1,ENST00000453295.1,ENST00000371714.1,ENST00000435686.2,ENST00000531828.1,ENST00000371710.3,ENST00000428468.1,ENST00000337809.4,ENST00000361556.5	chr1	52231493:52231653:52237741:52237854:52238276:52238368,	52237742	52237854	52237812	52237812	Nonsense_Mutation	G	T	p.E347*
UCEC	TCGA-EY-A1GS-01	CC2D1B	ENST00000450942.2,ENST00000284376.3,ENST00000460261.1,ENST00000438021.1	chr1	52823197:52823370:52823452:52823570:52824002:52824133,	52823453	52823570	52823512	52823512	Nonsense_Mutation	G	T	p.S513*
UCEC	TCGA-EY-A1GS-01	CC2D1B	ENST00000438831.1,ENST00000371586.2	chr1	52823197:52823370:52823452:52823588:52824002:52824133,	52823453	52823588	52823512	52823512	Nonsense_Mutation	G	T	p.S513*
UCEC	TCGA-B5-A11N-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2,ENST00000473584.1,ENST00000371513.5	chr1	53442354:53442441:53443888:53444039:53446067:53446125,	53443889	53444039	53443986	53443986	Nonsense_Mutation	G	T	p.E258*
UCEC	TCGA-B5-A0JY-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2,ENST00000473584.1,ENST00000371513.5	chr1	53442354:53442441:53443888:53444039:53446067:53446125,	53443889	53444039	53443986	53443986	Nonsense_Mutation	G	T	p.E258*
UCEC	TCGA-BS-A0UF-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2,ENST00000473584.1,ENST00000371513.5	chr1	53442354:53442441:53443888:53444039:53446067:53446125,	53443889	53444039	53443986	53443986	Nonsense_Mutation	G	T	p.E258*
UCEC	TCGA-AP-A051-01	SCP2	ENST00000371514.3,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2	chr1	53446067:53446215:53453700:53453808:53480561:53480715,	53453701	53453808	53453727	53453727	Nonsense_Mutation	G	T	p.G334*
UCEC	TCGA-AX-A0J0-01	DIO1	ENST00000529329.1	chr1	54359883:54360028:54360111:54360220:54370338:54370482,54359883:54360028:54360111:54360220:54371767:54371833,	54360112	54360220	54360124	54360124	Nonsense_Mutation	C	T	p.R81*
UCEC	TCGA-AP-A059-01	SSBP3	ENST00000533946.1,ENST00000533209.1,ENST00000326956.7,ENST00000371319.3,ENST00000525990.1,ENST00000426150.1	chr1	54717466:54717533:54722799:54722859:54723741:54723822,54717466:54717533:54722799:54722859:54747110:54747200,	54722800	54722859	54722844	54722844	Nonsense_Mutation	G	A	p.R155*
UCEC	TCGA-AP-A059-01	MYSM1	ENST00000493821.1,ENST00000401044.3,ENST00000472487.1	chr1	59131170:59131303:59132709:59132898:59133518:59133593,	59132710	59132898	59132739	59132739	Nonsense_Mutation	G	A	p.R668*
UCEC	TCGA-AP-A059-01	NFIA	ENST00000407417.3,ENST00000485903.2,ENST00000371185.2,ENST00000371184.2,ENST00000371189.4,ENST00000357977.5,ENST00000371191.1,ENST00000403491.3	chr1	61872343:61872399:61892136:61892228:61920974:61921159,	61892137	61892228	61892169	61892169	Nonsense_Mutation	C	T	p.R530*
UCEC	TCGA-D1-A16X-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62739623	62739623	Nonsense_Mutation	G	A	p.R385*
UCEC	TCGA-B5-A11E-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910554	62910554	Nonsense_Mutation	G	T	p.E235*
UCEC	TCGA-BS-A0UV-01	DOCK7	ENST00000340370.5	chr1	63009326:63009416:63018402:63018572:63021495:63021605,	63018403	63018572	63018423	63018423	Nonsense_Mutation	G	A	p.R916*
UCEC	TCGA-AP-A056-01	ANGPTL3	ENST00000371129.3	chr1	63064366:63064477:63066752:63066867:63067439:63067553,	63066753	63066867	63066774	63066774	Nonsense_Mutation	G	T	p.E210*
UCEC	TCGA-B5-A11U-01	ANGPTL3	ENST00000371129.3	chr1	63067990:63068051:63069639:63069906:63070303:63071830,	63069640	63069906	63069702	63069702	Nonsense_Mutation	C	T	p.R332*
UCEC	TCGA-AX-A05Z-01	ATG4C	ENST00000317868.4,ENST00000371120.3,ENST00000443289.1,ENST00000371118.1	chr1	63270842:63270926:63282245:63282479:63284675:63284736,	63282246	63282479	63282317	63282317	Nonsense_Mutation	G	T	p.E78*
UCEC	TCGA-B5-A0JY-01	ATG4C	ENST00000317868.4,ENST00000371120.3,ENST00000443289.1,ENST00000371118.1	chr1	63270842:63270926:63282245:63282479:63284675:63284736,	63282246	63282479	63282317	63282317	Nonsense_Mutation	G	T	p.E78*
UCEC	TCGA-D1-A103-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284686	63284686	Nonsense_Mutation	G	A	p.W135*
UCEC	TCGA-B5-A0JY-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284765	63284765	Nonsense_Mutation	G	T	p.E162*
UCEC	TCGA-AX-A0J0-01	ITGB3BP	ENST00000460394.1,ENST00000476508.1,ENST00000371092.3,ENST00000462285.1,ENST00000463803.1,ENST00000271002.10,ENST00000461681.1,ENST00000489863.1,ENST00000283568.8,ENST00000489099.1	chr1	63919588:63919645:63920050:63920144:63920560:63920620,	63920051	63920144	63920057	63920057	Nonsense_Mutation	C	A	p.E141*
UCEC	TCGA-D1-A17Q-01	ITGB3BP	ENST00000460251.1	chr1	63920575:63920639:63944434:63944504:63955753:63955885,63923547:63924044:63944434:63944504:63955753:63955885,	63944435	63944504	63944460	63944460	Nonsense_Mutation	C	A	p.E77*
UCEC	TCGA-AP-A059-01	RAVER2	ENST00000371072.4,ENST00000294428.3	chr1	65270673:65270788:65272888:65273157:65278420:65278532,	65272889	65273157	65273143	65273143	Nonsense_Mutation	G	T	p.E543*
UCEC	TCGA-B5-A11J-01	JAK1	ENST00000342505.4	chr1	65306927:65307022:65307133:65307284:65309746:65309898,	65307134	65307284	65307173	65307173	Nonsense_Mutation	G	A	p.R839*
UCEC	TCGA-BS-A0UF-01	LEPR	ENST00000349533.6	chr1	66087035:66087141:66088588:66088664:66098834:66101111,66087035:66087141:66088588:66088664:66095884:66096105,66087035:66087141:66088588:66088664:66101873:66102785,	66088589	66088664	66088647	66088647	Nonsense_Mutation	G	T	p.G886*
UCEC	TCGA-BS-A0UF-01	PDE4B	ENST00000329654.4,ENST00000371049.3,ENST00000423207.2,ENST00000341517.4	chr1	66731720:66731770:66798190:66798303:66821209:66821303,	66798191	66798303	66798193	66798193	Nonsense_Mutation	G	T	p.E213*
UCEC	TCGA-AP-A051-01	SGIP1	ENST00000371037.4,ENST00000435165.2,ENST00000371036.3,ENST00000371039.1,ENST00000371035.3,ENST00000237247.6	chr1	67199430:67199563:67205017:67205220:67206340:67206405,	67205018	67205220	67205069	67205069	Nonsense_Mutation	C	T	p.R695*
UCEC	TCGA-AP-A0LM-01	TCTEX1D1	ENST00000282670.2,ENST00000528352.1	chr1	67218214:67218267:67220338:67220460:67236069:67236161,	67220339	67220460	67220432	67220432	Nonsense_Mutation	C	T	p.R31*
UCEC	TCGA-AX-A0J0-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67306151:67306354:67313166:67313361:67327829:67327985,	67313167	67313361	67313332	67313332	Nonsense_Mutation	C	A	p.E376*
UCEC	TCGA-BS-A0UF-01	ANKRD13C	ENST00000370944.4,ENST00000262346.6,ENST00000490846.1	chr1	70758070:70758232:70761812:70761944:70766446:70766591,	70761813	70761944	70761923	70761923	Nonsense_Mutation	C	A	p.E315*
UCEC	TCGA-B5-A0JY-01	CTH	ENST00000346806.2,ENST00000411986.2,ENST00000370938.3	chr1	70897765:70897918:70899510:70899632:70900807:70900860,	70899511	70899632	70899534	70899534	Nonsense_Mutation	G	T	p.E301*
UCEC	TCGA-B5-A0JY-01	LHX8	ENST00000294638.5,ENST00000356261.3	chr1	75606669:75606791:75608802:75609023:75609529:75609633,	75608803	75609023	75609017	75609017	Nonsense_Mutation	G	T	p.E202*
UCEC	TCGA-BS-A0UF-01	AK5	ENST00000344720.5,ENST00000354567.2	chr1	77763539:77763632:77806061:77806253:77876665:77876756,	77806062	77806253	77806116	77806116	Nonsense_Mutation	G	T	p.E252*
UCEC	TCGA-B5-A0JY-01	USP33	ENST00000370793.1,ENST00000370792.3,ENST00000370794.3,ENST00000524536.1,ENST00000357428.1	chr1	78201740:78201843:78204949:78205102:78206561:78206619,	78204950	78205102	78205036	78205036	Nonsense_Mutation	C	A	p.E120*
UCEC	TCGA-BS-A0UV-01	IFI44L	ENST00000370751.5	chr1	79086153:79086256:79093590:79094078:79094635:79094684,	79093591	79094078	79093889	79093889	Nonsense_Mutation	G	T	p.E97*
UCEC	TCGA-BS-A0UF-01	IFI44	ENST00000472152.1	chr1	79121046:79121196:79124996:79125168:79129449:79129582,	79124997	79125168	79125147	79125147	Nonsense_Mutation	C	T	p.R331*
UCEC	TCGA-AX-A05Z-01	IFI44	ENST00000472152.1	chr1	79121046:79121196:79124996:79125168:79129449:79129582,	79124997	79125168	79125147	79125147	Nonsense_Mutation	C	T	p.R331*
UCEC	TCGA-AX-A0J0-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4	chr1	85124000:85124151:85127880:85128058:85128137:85128213,	85127881	85128058	85128048	85128048	Nonsense_Mutation	C	A	p.E254*
UCEC	TCGA-AP-A056-01	WDR63	ENST00000294664.6,ENST00000528899.1,ENST00000464801.1,ENST00000370596.1,ENST00000326813.8	chr1	85546916:85547098:85547982:85548087:85550228:85550251,	85547983	85548087	85548073	85548073	Nonsense_Mutation	G	T	p.E126*
UCEC	TCGA-BS-A0TC-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648386	85648386	Nonsense_Mutation	C	A	p.E647*
UCEC	TCGA-AX-A0J0-01	ODF2L	ENST00000370566.3,ENST00000370567.1,ENST00000488879.2,ENST00000486557.1,ENST00000524695.1,ENST00000460698.2,ENST00000394731.1,ENST00000496592.1,ENST00000294678.2,ENST00000479890.1	chr1	86826114:86826219:86836700:86836836:86838113:86838223,	86836701	86836836	86836772	86836772	Nonsense_Mutation	C	A	p.E329*
UCEC	TCGA-B5-A11E-01	ODF2L	ENST00000370566.3,ENST00000370567.1,ENST00000488879.2,ENST00000486557.1,ENST00000524695.1,ENST00000460698.2,ENST00000394731.1,ENST00000496592.1,ENST00000294678.2,ENST00000479890.1	chr1	86826114:86826219:86836700:86836836:86838113:86838223,	86836701	86836836	86836790	86836790	Nonsense_Mutation	C	A	p.G323*
UCEC	TCGA-AX-A05Z-01	ODF2L	ENST00000479890.1	chr1	86841915:86842101:86848613:86848685:86848816:86848879,	86848614	86848685	86848643	86848643	Nonsense_Mutation	C	A	p.E160*
UCEC	TCGA-AX-A0J0-01	CLCA1	ENST00000394711.1,ENST00000234701.3	chr1	86951025:86951244:86952208:86952436:86954678:86954853,	86952209	86952436	86952422	86952422	Nonsense_Mutation	C	T	p.R390*
UCEC	TCGA-AX-A0J0-01	CLCA4	ENST00000370563.3,ENST00000263723.5	chr1	87025614:87025755:87025893:87026041:87029343:87029452,	87025894	87026041	87025936	87025936	Nonsense_Mutation	G	T	p.E115*
UCEC	TCGA-BS-A0UF-01	SH3GLB1	ENST00000482504.1,ENST00000370558.4	chr1	87181406:87181548:87185189:87185318:87188222:87188356,	87185190	87185318	87185204	87185204	Nonsense_Mutation	G	T	p.E77*
UCEC	TCGA-B5-A0JY-01	GBP4	ENST00000355754.6	chr1	89655720:89656001:89656943:89657189:89658586:89658783,	89656944	89657189	89657130	89657130	Nonsense_Mutation	G	A	p.R244*
UCEC	TCGA-BS-A0UF-01	GBP4	ENST00000355754.6	chr1	89655720:89656001:89656943:89657189:89658586:89658783,	89656944	89657189	89657165	89657165	Nonsense_Mutation	G	T	p.S232*
UCEC	TCGA-D1-A103-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478723	90478723	Nonsense_Mutation	C	T	p.R285*
UCEC	TCGA-AP-A056-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404729	91404729	Nonsense_Mutation	C	A	p.E728*
UCEC	TCGA-BS-A0TC-01	HFM1	ENST00000370425.3,ENST00000488023.1,ENST00000481900.1,ENST00000294696.5,ENST00000455133.1	chr1	91859729:91859959:91861849:91861962:91866568:91866666,	91861850	91861962	91861906	91861906	Nonsense_Mutation	G	T	p.S43*
UCEC	TCGA-AP-A059-01	BRDT	ENST00000427104.1	chr1	92415861:92416031:92428274:92428503:92430183:92430279,	92428275	92428503	92428330	92428330	Nonsense_Mutation	C	T	p.Q7*
UCEC	TCGA-AP-A0LM-01	MTF2	ENST00000471953.1,ENST00000370303.4,ENST00000370298.4	chr1	93544867:93545088:93575786:93575985:93576101:93576183,	93575787	93575985	93575839	93575839	Nonsense_Mutation	C	T	p.R20*
UCEC	TCGA-D1-A17Q-01	MTF2	ENST00000545708.1,ENST00000471953.1,ENST00000476037.1,ENST00000540243.1,ENST00000370298.4,ENST00000467953.1,ENST00000487263.1	chr1	93592788:93592856:93594834:93595005:93599259:93599297,	93594835	93595005	93594884	93594884	Nonsense_Mutation	C	T	p.R347*
UCEC	TCGA-BS-A0UF-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93712394:93712511:93720027:93720171:93721891:93722095,	93720028	93720171	93720073	93720073	Nonsense_Mutation	C	T	p.R1200*
UCEC	TCGA-AX-A0J0-01	ABCD3	ENST00000536817.1,ENST00000484213.1,ENST00000370214.4,ENST00000454898.2,ENST00000394233.2	chr1	94964338:94964404:94964500:94964590:94965050:94965170,	94964501	94964590	94964528	94964528	Nonsense_Mutation	C	T	p.R520*
UCEC	TCGA-B5-A0JY-01	ABCD3	ENST00000536817.1,ENST00000484213.1,ENST00000370214.4,ENST00000454898.2,ENST00000394233.2	chr1	94965050:94965170:94972093:94972198:94980701:94980758,	94972094	94972198	94972193	94972193	Nonsense_Mutation	C	T	p.R614*
UCEC	TCGA-BS-A0UF-01	SLC44A3	ENST00000530397.1,ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95294048:95294142:95303266:95303427:95305503:95305593,	95303267	95303427	95303289	95303289	Nonsense_Mutation	C	T	p.R178*
UCEC	TCGA-D1-A16X-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95358065	95358065	Nonsense_Mutation	G	T	p.E617*
UCEC	TCGA-D1-A17Q-01	SLC30A7	ENST00000357650.4,ENST00000370112.4	chr1	101387261:101387397:101427383:101427474:101431324:101431474,	101427384	101427474	101427403	101427403	Nonsense_Mutation	G	T	p.E288*
UCEC	TCGA-AP-A059-01	AMY2B	ENST00000361355.4	chr1	104118062:104118162:104120111:104120230:104120341:104120467,	104120112	104120230	104120214	104120214	Nonsense_Mutation	C	T	p.R402*
UCEC	TCGA-B5-A0JY-01	AKNAD1	ENST00000369995.3,ENST00000369994.1,ENST00000461774.1,ENST00000370001.3,ENST00000603450.1,ENST00000357393.4,ENST00000474186.1	chr1	109366187:109366310:109369826:109369924:109373180:109373272,	109369827	109369924	109369896	109369896	Nonsense_Mutation	C	A	p.G623*
UCEC	TCGA-AP-A0LM-01	AKNAD1	ENST00000369995.3,ENST00000370001.3,ENST00000357393.4	chr1	109377068:109377150:109377550:109377678:109380171:109380328,	109377551	109377678	109377642	109377642	Nonsense_Mutation	G	A	p.R525*
UCEC	TCGA-AP-A056-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109441263:109441387:109441500:109441616:109444411:109444567,	109441501	109441616	109441519	109441519	Nonsense_Mutation	G	T	p.E234*
UCEC	TCGA-AP-A0LM-01	WDR47	ENST00000369965.4,ENST00000369962.3	chr1	109560139:109560223:109565976:109566143:109584483:109584608,	109565977	109566143	109566104	109566104	Nonsense_Mutation	C	A	p.E11*
UCEC	TCGA-BS-A0UJ-01	SARS	ENST00000369923.4,ENST00000234677.2	chr1	109777831:109778053:109778598:109778728:109779012:109779170,	109778599	109778728	109778706	109778706	Nonsense_Mutation	C	A	p.Y359*
UCEC	TCGA-AP-A0LM-01	SORT1	ENST00000538502.1,ENST00000256637.6	chr1	109856422:109856679:109856882:109857006:109857293:109857400,	109856883	109857006	109856993	109856993	Nonsense_Mutation	G	A	p.R791*
UCEC	TCGA-B5-A11E-01	PSMA5	ENST00000538610.1,ENST00000271308.4,ENST00000490870.1	chr1	109952549:109952636:109953632:109953735:109954498:109954557,	109953633	109953735	109953692	109953692	Nonsense_Mutation	G	A	p.R168*
UCEC	TCGA-AP-A059-01	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110086145	110086145	Nonsense_Mutation	G	A	p.W167*
UCEC	TCGA-AP-A059-01	SLC6A17	ENST00000331565.4	chr1	110719250:110719361:110734593:110734835:110735127:110735320,	110734594	110734835	110734702	110734702	Nonsense_Mutation	C	T	p.Q325*
UCEC	TCGA-AP-A056-01	OVGP1	ENST00000369732.3	chr1	111963897:111964083:111964186:111964295:111965548:111965673,	111964187	111964295	111964246	111964246	Nonsense_Mutation	C	A	p.E220*
UCEC	TCGA-AP-A056-01	OVGP1	ENST00000481495.1	chr1	111962231:111962348:111963897:111964295:111965548:111965673,	111963898	111964295	111964246	111964246	Nonsense_Mutation	C	A	p.E220*
UCEC	TCGA-BS-A0UV-01	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000544629.1,ENST00000369666.1,ENST00000369669.1,ENST00000543570.1,ENST00000369668.2,ENST00000343210.7,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000360743.4,ENST00000361846.3	chr1	113120966:113121039:113124613:113124728:113124996:113125094,	113124614	113124728	113124719	113124719	Nonsense_Mutation	C	A	p.E322*
UCEC	TCGA-B5-A11E-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113460301	113460301	Nonsense_Mutation	G	A	p.R243*
UCEC	TCGA-AX-A0J1-01	AP4B1	ENST00000484201.1,ENST00000369569.1,ENST00000369571.2,ENST00000256658.4,ENST00000472122.1,ENST00000489092.1,ENST00000369564.1	chr1	114442952:114443022:114443857:114444005:114444376:114444507,	114443858	114444005	114443859	114443859	Nonsense_Mutation	G	A	p.R206*
UCEC	TCGA-BS-A0UV-01	AP4B1	ENST00000484201.1,ENST00000369569.1,ENST00000369571.2,ENST00000256658.4,ENST00000472122.1,ENST00000489092.1,ENST00000369564.1	chr1	114442952:114443022:114443857:114444005:114444376:114444507,	114443858	114444005	114443859	114443859	Nonsense_Mutation	G	A	p.R206*
UCEC	TCGA-BS-A0UV-01	TRIM33	ENST00000358465.2,ENST00000450349.2,ENST00000448034.1,ENST00000369543.2	chr1	114942078:114942231:114944010:114944085:114945381:114945505,	114944011	114944085	114944012	114944012	Nonsense_Mutation	G	A	p.R750*
UCEC	TCGA-D1-A176-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115261233:115261366:115262199:115262363:115263159:115263338,	115262200	115262363	115262208	115262208	Nonsense_Mutation	C	T	p.W751*
UCEC	TCGA-BS-A0UF-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115273149:115273269:115275224:115275437:115276352:115276478,	115275225	115275437	115275287	115275287	Nonsense_Mutation	G	A	p.R345*
UCEC	TCGA-D1-A17Q-01	SYCP1	ENST00000369522.3,ENST00000493377.1,ENST00000369518.1,ENST00000455987.1	chr1	115455653:115455771:115456595:115456666:115466069:115466151,	115456596	115456666	115456635	115456635	Nonsense_Mutation	G	T	p.E563*
UCEC	TCGA-B5-A0JY-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087140	117087140	Nonsense_Mutation	C	A	p.E53*
UCEC	TCGA-BS-A0UF-01	PDE4DIP	ENST00000467859.2	chr1	144906420:144906537:144909868:144909960:144911881:144911963,144895088:144895290:144909868:144909960:144911881:144911963,	144909869	144909960	144909928	144909928	Nonsense_Mutation	C	A	p.E754*
UCEC	TCGA-D1-A167-01	NUDT17	ENST00000460879.1	chr1	145587719:145587818:145588377:145588635:145588871:145589055,145587719:145587818:145588377:145588635:145589235:145589409,	145588378	145588635	145588452	145588452	Nonsense_Mutation	G	A	p.R141*
UCEC	TCGA-D1-A167-01	NUDT17	ENST00000334513.5	chr1	145587719:145587818:145588377:145588470:145588609:145588635,	145588378	145588470	145588452	145588452	Nonsense_Mutation	G	A	p.R141*
UCEC	TCGA-B5-A0JY-01	CD160	ENST00000401557.3,ENST00000369288.2	chr1	145698952:145699090:145704016:145704343:145706685:145706827,	145704017	145704343	145704266	145704266	Nonsense_Mutation	C	A	p.E51*
UCEC	TCGA-AP-A051-01	FMO5	ENST00000254090.4	chr1	146657839:146658824:146661755:146661828:146672733:146672925,	146661756	146661828	146661790	146661790	Nonsense_Mutation	C	A	p.E408*
UCEC	TCGA-D1-A17Q-01	ANP32E	ENST00000533654.1	chr1	150192839:150193063:150198939:150199127:150202905:150203028,	150198940	150199127	150198948	150198948	Nonsense_Mutation	C	A	p.E225*
UCEC	TCGA-B5-A0JY-01	ANP32E	ENST00000436748.2	chr1	150202905:150203028:150204114:150204264:150208080:150208177,150201404:150201570:150204114:150204264:150208080:150208177,	150204115	150204264	150204195	150204195	Nonsense_Mutation	T	A	p.K42*
UCEC	TCGA-AP-A051-01	C1orf54	ENST00000369099.3,ENST00000369102.1	chr1	150248934:150249040:150252053:150252152:150253245:150253325,	150252054	150252152	150252087	150252087	Nonsense_Mutation	C	T	p.R112*
UCEC	TCGA-AX-A0J1-01	PRPF3	ENST00000324862.6	chr1	150298208:150298339:150300778:150300925:150305154:150305238,	150300779	150300925	150300833	150300833	Nonsense_Mutation	C	T	p.R111*
UCEC	TCGA-AP-A059-01	ARNT	ENST00000515192.1,ENST00000471844.2,ENST00000354396.2,ENST00000468970.1,ENST00000505755.1,ENST00000358595.5	chr1	150804809:150804875:150807013:150807116:150808755:150808969,	150807014	150807116	150807021	150807021	Nonsense_Mutation	G	A	p.R266*
UCEC	TCGA-B5-A11E-01	SETDB1	ENST00000368963.1	chr1	150913804:150913904:150915038:150915164:150916395:150916469,	150915039	150915164	150915098	150915098	Nonsense_Mutation	C	T	p.R203*
UCEC	TCGA-B5-A11J-01	CERS2	ENST00000345896.4,ENST00000560793.2,ENST00000559660.1,ENST00000561294.1,ENST00000368949.4,ENST00000361419.5,ENST00000368954.5,ENST00000271688.6,ENST00000558062.1	chr1	150939622:150939678:150939867:150939960:150940139:150940166,	150939868	150939960	150939873	150939873	Nonsense_Mutation	G	A	p.R203*
UCEC	TCGA-D1-A17Q-01	VPS72	ENST00000368892.4,ENST00000491094.2,ENST00000496809.1,ENST00000354473.4	chr1	151150476:151150621:151156792:151156969:151157981:151158096,	151156793	151156969	151156814	151156814	Nonsense_Mutation	C	A	p.E181*
UCEC	TCGA-B5-A11E-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288273	151288273	Nonsense_Mutation	G	A	p.R241*
UCEC	TCGA-AP-A0LM-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000409503.1,ENST00000531094.1,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151395997:151396027:151396424:151396762:151400298:151400456,151395997:151396027:151396424:151396762:151397430:151397537,	151396425	151396762	151396426	151396426	Nonsense_Mutation	G	A	p.R508*
UCEC	TCGA-AP-A051-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000409503.1,ENST00000531094.1,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151395997:151396027:151396424:151396762:151400298:151400456,151395997:151396027:151396424:151396762:151397430:151397537,	151396425	151396762	151396426	151396426	Nonsense_Mutation	G	A	p.R508*
UCEC	TCGA-AP-A0LM-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000409503.1,ENST00000531094.1,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151395997:151396027:151396424:151396762:151400298:151400456,151395997:151396027:151396424:151396762:151397430:151397537,	151396425	151396762	151396465	151396465	Nonsense_Mutation	G	A	p.R495*
UCEC	TCGA-BS-A0UV-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000409503.1,ENST00000531094.1,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151395997:151396027:151396424:151396762:151400298:151400456,151395997:151396027:151396424:151396762:151397430:151397537,	151396425	151396762	151396750	151396750	Nonsense_Mutation	C	A	p.E400*
UCEC	TCGA-BS-A0UV-01	OAZ3	ENST00000453029.2,ENST00000400999.1,ENST00000321531.5,ENST00000315067.8	chr1	151739700:151739775:151740533:151740709:151742647:151742733,	151740534	151740709	151740600	151740600	Nonsense_Mutation	C	A	p.S48*
UCEC	TCGA-AP-A056-01	THEM5	ENST00000368817.5	chr1	151820657:151820768:151823528:151823667:151824733:151824876,	151823529	151823667	151823623	151823623	Nonsense_Mutation	C	A	p.G124*
UCEC	TCGA-AP-A051-01	CHTOP	ENST00000368694.3,ENST00000368687.1	chr1	153614721:153614905:153615702:153615840:153617539:153617946,	153615703	153615840	153615726	153615726	Nonsense_Mutation	C	T	p.R143*
UCEC	TCGA-D1-A103-01	CHTOP	ENST00000368694.3,ENST00000368687.1	chr1	153614721:153614905:153615702:153615840:153617539:153617946,	153615703	153615840	153615741	153615741	Nonsense_Mutation	C	T	p.R148*
UCEC	TCGA-D1-A16X-01	CHTOP	ENST00000368694.3,ENST00000368687.1	chr1	153614721:153614905:153615702:153615840:153617539:153617946,	153615703	153615840	153615768	153615768	Nonsense_Mutation	C	T	p.R157*
UCEC	TCGA-B5-A11N-01	NPR1	ENST00000368680.3	chr1	153662759:153662858:153665581:153665673:153665827:153666468,	153665582	153665673	153665653	153665653	Nonsense_Mutation	C	T	p.R1035*
UCEC	TCGA-B5-A11U-01	IL6R	ENST00000507256.1,ENST00000368485.3	chr1	154422386:154422456:154426963:154427057:154437609:154437724,	154426964	154427057	154427026	154427026	Nonsense_Mutation	G	T	p.G377*
UCEC	TCGA-BS-A0UF-01	ADAM15	ENST00000271836.6,ENST00000368413.1,ENST00000368412.3,ENST00000526491.1,ENST00000355956.2,ENST00000461564.2,ENST00000498481.2,ENST00000531455.1,ENST00000527418.1,ENST00000356955.2,ENST00000360674.4,ENST00000359280.4,ENST00000529473.1,ENST00000368410.2,ENST00000472434.1,ENST00000461234.1,ENST00000449910.2	chr1	155030721:155030917:155031185:155031263:155032377:155032450,	155031186	155031263	155031201	155031201	Nonsense_Mutation	C	T	p.R645*
UCEC	TCGA-B5-A0JY-01	ADAM15	ENST00000271836.6,ENST00000368413.1,ENST00000368412.3,ENST00000526491.1,ENST00000355956.2,ENST00000461564.2,ENST00000498481.2,ENST00000531455.1,ENST00000527418.1,ENST00000356955.2,ENST00000360674.4,ENST00000359280.4,ENST00000529473.1,ENST00000368410.2,ENST00000472434.1,ENST00000461234.1,ENST00000449910.2	chr1	155030721:155030917:155031185:155031263:155032377:155032450,	155031186	155031263	155031240	155031240	Nonsense_Mutation	C	T	p.R658*
UCEC	TCGA-B5-A11R-01	MTX1	ENST00000316721.4,ENST00000424959.1,ENST00000368376.3,ENST00000481771.1,ENST00000495589.1,ENST00000609421.1	chr1	155182175:155182358:155182484:155182561:155183027:155183182,	155182485	155182561	155182524	155182524	Nonsense_Mutation	C	G	p.S194*
UCEC	TCGA-AX-A0J1-01	CLK2	ENST00000355560.4,ENST00000361168.5	chr1	155238083:155238150:155238498:155238583:155239278:155239504,	155238499	155238583	155238502	155238502	Nonsense_Mutation	G	A	p.R161*
UCEC	TCGA-AX-A0J1-01	CLK2	ENST00000368361.4,ENST00000471047.1,ENST00000536801.1	chr1	155238083:155238150:155238498:155238586:155239278:155239504,	155238499	155238586	155238502	155238502	Nonsense_Mutation	G	A	p.R161*
UCEC	TCGA-AX-A05Z-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451184	155451184	Nonsense_Mutation	C	A	p.E493*
UCEC	TCGA-BS-A0UV-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491082	155491082	Nonsense_Mutation	C	A	p.E77*
UCEC	TCGA-AP-A056-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491082	155491082	Nonsense_Mutation	C	A	p.E77*
UCEC	TCGA-BS-A0UF-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491082	155491082	Nonsense_Mutation	C	A	p.E77*
UCEC	TCGA-AP-A0LM-01	SMG5	ENST00000368267.5,ENST00000361813.5	chr1	156243151:156243241:156244387:156244477:156246875:156247032,	156244388	156244477	156244415	156244415	Nonsense_Mutation	G	A	p.R173*
UCEC	TCGA-AP-A051-01	TMEM79	ENST00000295694.5,ENST00000463670.1,ENST00000405535.2	chr1	156254974:156255058:156256050:156256264:156261175:156261316,156255422:156255774:156256050:156256264:156261175:156261316,	156256051	156256264	156256137	156256137	Nonsense_Mutation	C	T	p.R282*
UCEC	TCGA-AP-A051-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156256137	156256137	Nonsense_Mutation	C	T	p.R282*
UCEC	TCGA-B5-A0JY-01	BCAN	ENST00000329117.5	chr1	156621247:156621481:156622039:156622684:156626073:156626181,	156622040	156622684	156622108	156622108	Nonsense_Mutation	G	T	p.E456*
UCEC	TCGA-B5-A0JY-01	PYHIN1	ENST00000392252.3,ENST00000368138.3,ENST00000368140.1,ENST00000392254.2	chr1	158908213:158908332:158908869:158909037:158911766:158912189,	158908870	158909037	158908891	158908891	Nonsense_Mutation	G	T	p.E145*
UCEC	TCGA-AP-A059-01	FCRLA	ENST00000367953.3,ENST00000367959.2	chr1	161677084:161677133:161680549:161680702:161680997:161681262,161677084:161677133:161680549:161680702:161681723:161682008,161677084:161677133:161680549:161680702:161682874:161683242,161680267:161680282:161680549:161680702:161680997:161681262,	161680550	161680702	161680570	161680570	Nonsense_Mutation	C	T	p.Q51*
UCEC	TCGA-AP-A059-01	FCRLA	ENST00000465403.1	chr1	161680267:161680282:161680549:161680653:161680997:161681262,	161680550	161680653	161680570	161680570	Nonsense_Mutation	C	T	p.Q51*
UCEC	TCGA-AP-A051-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681071	161681071	Nonsense_Mutation	G	A	p.W119*
UCEC	TCGA-AP-A051-01	FCRLA	ENST00000540926.1,ENST00000367953.3,ENST00000367959.2,ENST00000236938.6	chr1	161680549:161680702:161680997:161681264:161682874:161683242,161680549:161680702:161680997:161681264:161681723:161682008,	161680998	161681264	161681071	161681071	Nonsense_Mutation	G	A	p.W119*
UCEC	TCGA-AP-A051-01	ATF6	ENST00000367942.3	chr1	161789422:161789608:161790859:161790951:161816238:161816370,	161790860	161790951	161790890	161790890	Nonsense_Mutation	C	T	p.R376*
UCEC	TCGA-AP-A051-01	ATF6	ENST00000367942.3	chr1	161823013:161823113:161829996:161830067:161832987:161833102,	161829997	161830067	161830048	161830048	Nonsense_Mutation	G	T	p.E529*
UCEC	TCGA-AP-A0LM-01	UHMK1	ENST00000489294.1,ENST00000538489.1,ENST00000545294.1	chr1	162469744:162470037:162470702:162470894:162473543:162473638,	162470703	162470894	162470891	162470891	Nonsense_Mutation	G	A	p.W250*
UCEC	TCGA-B5-A0JY-01	UHMK1	ENST00000489294.1,ENST00000282169.8,ENST00000545294.1	chr1	162482514:162482613:162487891:162487980:162492193:162492435,	162487892	162487980	162487912	162487912	Nonsense_Mutation	G	T	p.E349*
UCEC	TCGA-BS-A0UF-01	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000465705.1,ENST00000392129.6,ENST00000580248.1,ENST00000481278.1	chr1	165712415:165712548:165721338:165721406:165723464:165723511,	165721339	165721406	165721403	165721403	Nonsense_Mutation	G	A	p.R87*
UCEC	TCGA-B5-A11E-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166818510	166818510	Nonsense_Mutation	C	T	p.R232*
UCEC	TCGA-A5-A0VP-01	POU2F1	ENST00000541643.3,ENST00000429375.2,ENST00000443275.1,ENST00000271411.4,ENST00000367865.1,ENST00000367866.2,ENST00000420254.3,ENST00000367862.5	chr1	167353093:167353188:167358824:167358998:167365522:167365664,	167358825	167358998	167358897	167358897	Nonsense_Mutation	C	T	p.R273*
UCEC	TCGA-AP-A056-01	CREG1	ENST00000370509.4	chr1	167510249:167511538:167515337:167515522:167517238:167517358,	167515338	167515522	167515477	167515477	Nonsense_Mutation	G	A	p.R174*
UCEC	TCGA-B5-A11E-01	RCSD1	ENST00000537350.1,ENST00000367854.3	chr1	167659285:167659357:167663335:167663539:167666335:167666524,	167663336	167663539	167663456	167663456	Nonsense_Mutation	C	T	p.R131*
UCEC	TCGA-AP-A059-01	MPZL1	ENST00000465787.1,ENST00000367853.3,ENST00000359523.2,ENST00000474859.1,ENST00000474729.1	chr1	167734825:167734986:167741511:167741725:167742472:167742605,	167741512	167741725	167741533	167741533	Nonsense_Mutation	C	T	p.Q94*
UCEC	TCGA-AX-A0J0-01	DCAF6	ENST00000367843.3,ENST00000455334.1,ENST00000491067.1,ENST00000312263.6,ENST00000470721.1,ENST00000367840.3,ENST00000470919.1,ENST00000432587.2	chr1	167944067:167944253:167956732:167956846:167960441:167960577,	167956733	167956846	167956832	167956832	Nonsense_Mutation	G	T	p.E180*
UCEC	TCGA-B5-A11N-01	DCAF6	ENST00000367843.3,ENST00000367840.3,ENST00000432587.2	chr1	167973974:167974031:168007608:168007726:168012262:168012378,167992225:167992285:168007608:168007726:168012262:168012378,	168007609	168007726	168007704	168007704	Nonsense_Mutation	A	T	p.K512*
UCEC	TCGA-BS-A0UF-01	DCAF6	ENST00000367843.3,ENST00000312263.6,ENST00000367840.3,ENST00000432587.2	chr1	168034827:168034984:168035614:168035703:168037595:168037701,	168035615	168035703	168035686	168035686	Nonsense_Mutation	C	T	p.R819*
UCEC	TCGA-D1-A17Q-01	DCAF6	ENST00000367843.3,ENST00000312263.6,ENST00000367840.3,ENST00000432587.2,ENST00000489398.1	chr1	168035620:168035703:168037595:168037701:168044608:168044869,	168037596	168037701	168037605	168037605	Nonsense_Mutation	C	T	p.R828*
UCEC	TCGA-B5-A0JY-01	ATP1B1	ENST00000367816.1,ENST00000367815.4	chr1	169075657:169076164:169080607:169080736:169094121:169094277,	169080608	169080736	169080697	169080697	Nonsense_Mutation	G	T	p.E63*
UCEC	TCGA-BS-A0UF-01	NME7	ENST00000367811.3,ENST00000472647.1,ENST00000483228.1	chr1	169138758:169138792:169199955:169200057:169204368:169204437,	169199956	169200057	169199982	169199982	Nonsense_Mutation	G	A	p.R322*
UCEC	TCGA-AP-A059-01	NME7	ENST00000485609.1	chr1	169279207:169279318:169293630:169293738:169336945:169336968,	169293631	169293738	169293678	169293678	Nonsense_Mutation	G	A	p.R22*
UCEC	TCGA-AP-A059-01	FMO4	ENST00000367749.3,ENST00000475780.1	chr1	171285324:171285466:171288956:171289096:171292142:171292331,	171288957	171289096	171289024	171289024	Nonsense_Mutation	C	A	p.C20*
UCEC	TCGA-AP-A059-01	PRDX6	ENST00000340385.5,ENST00000470017.1	chr1	173450464:173450621:173454499:173454646:173455393:173455540,	173454500	173454646	173454533	173454533	Nonsense_Mutation	G	T	p.E96*
UCEC	TCGA-AP-A051-01	ANKRD45	ENST00000333279.2	chr1	173596203:173596298:173615984:173616152:173628229:173628572,	173615985	173616152	173616022	173616022	Nonsense_Mutation	A	C	p.Y153*
UCEC	TCGA-AP-A056-01	DARS2	ENST00000361951.4	chr1	173822582:173822705:173822932:173823043:173825803:173825879,	173822933	173823043	173822993	173822993	Nonsense_Mutation	C	T	p.R542*
UCEC	TCGA-D1-A17Q-01	ANGPTL1	ENST00000234816.2,ENST00000367629.1	chr1	178821817:178822088:178822728:178822922:178834088:178834937,	178822729	178822922	178822893	178822893	Nonsense_Mutation	C	A	p.E285*
UCEC	TCGA-BS-A0UF-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178802558:178802685:178846632:178846770:178848036:178848127,	178846633	178846770	178846734	178846734	Nonsense_Mutation	C	T	p.R237*
UCEC	TCGA-BS-A0UV-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178802558:178802685:178846632:178846770:178848036:178848127,	178846633	178846770	178846734	178846734	Nonsense_Mutation	C	T	p.R237*
UCEC	TCGA-B5-A0JY-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414309	179414309	Nonsense_Mutation	G	T	p.E590*
UCEC	TCGA-BS-A0U8-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179631238:179631421:179632482:179632626:179638328:179638539,	179632483	179632626	179632591	179632591	Nonsense_Mutation	C	T	p.Q818*
UCEC	TCGA-AP-A0LM-01	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180905125	180905125	Nonsense_Mutation	G	T	p.G694*
UCEC	TCGA-AP-A0LM-01	GLUL	ENST00000311223.5,ENST00000339526.4,ENST00000475808.1,ENST00000489818.1,ENST00000480604.1,ENST00000417584.2,ENST00000331872.6,ENST00000484996.1	chr1	182355496:182355537:182356265:182356427:182357706:182357885,	182356266	182356427	182356278	182356278	Nonsense_Mutation	G	A	p.R106*
UCEC	TCGA-D1-A16X-01	GLUL	ENST00000311223.5,ENST00000339526.4,ENST00000475808.1,ENST00000489818.1,ENST00000480604.1,ENST00000417584.2,ENST00000331872.6,ENST00000484996.1	chr1	182355496:182355537:182356265:182356427:182357706:182357885,	182356266	182356427	182356278	182356278	Nonsense_Mutation	G	A	p.R106*
UCEC	TCGA-A5-A0GP-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852454:182852503:182852654:182852770:182853747:182853948,	182852655	182852770	182852658	182852658	Nonsense_Mutation	C	T	p.R1050*
UCEC	TCGA-BS-A0UV-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852454:182852503:182852654:182852770:182853747:182853948,	182852655	182852770	182852658	182852658	Nonsense_Mutation	C	T	p.R1050*
UCEC	TCGA-BS-A0UF-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852454:182852503:182852654:182852770:182853747:182853948,	182852655	182852770	182852658	182852658	Nonsense_Mutation	C	T	p.R1050*
UCEC	TCGA-AX-A0J1-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000419169.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183502810:183502967:183506279:183506350:183507514:183507575,	183506280	183506350	183506286	183506286	Nonsense_Mutation	G	A	p.W390*
UCEC	TCGA-BS-A0UF-01	NCF2	ENST00000367535.3,ENST00000419402.1,ENST00000418089.1,ENST00000413720.1,ENST00000367536.1	chr1	183536054:183536123:183536338:183536480:183538276:183538320,	183536339	183536480	183536425	183536425	Nonsense_Mutation	C	A	p.E257*
UCEC	TCGA-BS-A0UF-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	185976259:185976414:185984290:185984569:185985089:185985371,	185984291	185984569	185984479	185984479	Nonsense_Mutation	C	T	p.R1607*
UCEC	TCGA-AP-A0LM-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186275524	186275524	Nonsense_Mutation	G	T	p.G225*
UCEC	TCGA-BS-A0UV-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186275713	186275713	Nonsense_Mutation	G	T	p.E288*
UCEC	TCGA-BS-A0UV-01	TPR	ENST00000367478.4,ENST00000491783.1	chr1	186321146:186321242:186322819:186322982:186324541:186324684,	186322820	186322982	186322945	186322945	Nonsense_Mutation	G	A	p.R737*
UCEC	TCGA-BS-A0UV-01	TPR	ENST00000474852.1	chr1	186321146:186321242:186322819:186323012:186324541:186324684,	186322820	186323012	186322945	186322945	Nonsense_Mutation	G	A	p.R737*
UCEC	TCGA-AP-A0LM-01	TPR	ENST00000367478.4,ENST00000491783.1	chr1	186321146:186321242:186322819:186322982:186324541:186324684,	186322820	186322982	186322945	186322945	Nonsense_Mutation	G	A	p.R737*
UCEC	TCGA-AP-A0LM-01	TPR	ENST00000474852.1	chr1	186321146:186321242:186322819:186323012:186324541:186324684,	186322820	186323012	186322945	186322945	Nonsense_Mutation	G	A	p.R737*
UCEC	TCGA-BS-A0UF-01	PLA2G4A	ENST00000466600.1	chr1	186876096:186876134:186880379:186880521:186901894:186902031,186876096:186876134:186880379:186880521:186908139:186908362,	186880380	186880521	186880450	186880450	Nonsense_Mutation	G	T	p.E163*
UCEC	TCGA-BS-A0UV-01	UCHL5	ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998517:192998579:192998661:192998787:193018875:193018981,	192998662	192998787	192998688	192998688	Nonsense_Mutation	C	A	p.E116*
UCEC	TCGA-BS-A0UF-01	TROVE2	ENST00000400968.2,ENST00000367445.3,ENST00000367444.3,ENST00000367441.1,ENST00000416058.2,ENST00000367446.3,ENST00000367443.1	chr1	193028788:193028906:193044949:193045170:193045630:193045777,193038361:193038764:193044949:193045170:193045630:193045777,	193044950	193045170	193045117	193045117	Nonsense_Mutation	G	T	p.E250*
UCEC	TCGA-AX-A05Z-01	CDC73	ENST00000367435.3	chr1	193181519:193181607:193202122:193202284:193205385:193205486,	193202123	193202284	193202160	193202160	Nonsense_Mutation	C	T	p.Q398*
UCEC	TCGA-AP-A059-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196697481:196697652:196705953:196706136:196706604:196706790,	196705954	196706136	196706061	196706061	Nonsense_Mutation	G	T	p.E841*
UCEC	TCGA-BG-A0VX-01	CFHR3	ENST00000367427.3,ENST00000471440.2,ENST00000391985.3	chr1	196743945:196744074:196748291:196748486:196748926:196749103,	196748292	196748486	196748359	196748359	Nonsense_Mutation	C	A	p.Y42*
UCEC	TCGA-AP-A056-01	CFHR4	ENST00000367416.2,ENST00000367418.2,ENST00000251424.4	chr1	196881869:196882052:196883624:196883801:196884085:196884268,	196883625	196883801	196883708	196883708	Nonsense_Mutation	G	T	p.E175*
UCEC	TCGA-AP-A0LM-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197059979:197060171:197061036:197061186:197062181:197062391,	197061037	197061186	197061162	197061162	Nonsense_Mutation	G	A	p.R3107*
UCEC	TCGA-AX-A05Z-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073649	197073649	Nonsense_Mutation	G	A	p.R1578*
UCEC	TCGA-BS-A0UF-01	ZBTB41	ENST00000367405.4,ENST00000467322.1	chr1	197127571:197129144:197141289:197141378:197144139:197144245,	197141290	197141378	197141302	197141302	Nonsense_Mutation	G	A	p.R688*
UCEC	TCGA-AX-A0J0-01	NEK7	ENST00000367385.4,ENST00000538004.1	chr1	198222169:198222310:198231704:198231767:198233254:198233365,	198231705	198231767	198231750	198231750	Nonsense_Mutation	G	T	p.E82*
UCEC	TCGA-D1-A103-01	PTPRC	ENST00000352140.3,ENST00000367376.2,ENST00000529828.1,ENST00000442510.2,ENST00000418674.1	chr1	198661475:198661502:198665840:198666038:198668692:198668749,	198665841	198666038	198665930	198665930	Nonsense_Mutation	G	T	p.E62*
UCEC	TCGA-AP-A051-01	NR5A2	ENST00000367357.3,ENST00000367362.3,ENST00000236914.3,ENST00000544748.1	chr1	200012937:200013020:200014570:200014712:200017299:200017946,	200014571	200014712	200014583	200014583	Nonsense_Mutation	C	T	p.R112*
UCEC	TCGA-B5-A0JY-01	NR5A2	ENST00000367357.3,ENST00000367362.3,ENST00000236914.3,ENST00000544748.1	chr1	200012937:200013020:200014570:200014712:200017299:200017946,	200014571	200014712	200014653	200014653	Nonsense_Mutation	G	T	p.E56*
UCEC	TCGA-D1-A17Q-01	LAD1	ENST00000503578.1,ENST00000367313.3,ENST00000391967.2,ENST00000488842.1	chr1	201351813:201351867:201352201:201352339:201352444:201352517,	201352202	201352339	201352333	201352333	Nonsense_Mutation	C	A	p.E419*
UCEC	TCGA-AP-A059-01	NAV1	ENST00000430015.1,ENST00000490213.1,ENST00000367297.4,ENST00000438083.1,ENST00000469130.1	chr1	201758867:201758920:201759816:201759894:201762919:201763003,	201759817	201759894	201759817	201759817	Nonsense_Mutation	C	T	p.Q1082*
UCEC	TCGA-AP-A056-01	IPO9	ENST00000361565.4	chr1	201827982:201828122:201832575:201832735:201835860:201836087,	201832576	201832735	201832707	201832707	Nonsense_Mutation	C	T	p.R534*
UCEC	TCGA-BS-A0UF-01	IPO9	ENST00000361565.4	chr1	201827982:201828122:201832575:201832735:201835860:201836087,	201832576	201832735	201832707	201832707	Nonsense_Mutation	C	T	p.R534*
UCEC	TCGA-B5-A11E-01	RNPEP	ENST00000367286.3,ENST00000295640.4,ENST00000479531.1,ENST00000471105.1	chr1	201970786:201970895:201972364:201972589:201973481:201973624,	201972365	201972589	201972379	201972379	Nonsense_Mutation	C	T	p.R481*
UCEC	TCGA-AX-A05Z-01	PPP1R12B	ENST00000608999.1,ENST00000466968.1,ENST00000356764.2,ENST00000336894.4,ENST00000480184.1,ENST00000488330.1,ENST00000476364.1	chr1	202397982:202398057:202399858:202399938:202400607:202400747,	202399859	202399938	202399936	202399936	Nonsense_Mutation	G	T	p.E129*
UCEC	TCGA-D1-A16X-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667374	203667374	Nonsense_Mutation	G	T	p.E95*
UCEC	TCGA-B5-A11E-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667386	203667386	Nonsense_Mutation	G	T	p.E99*
UCEC	TCGA-B5-A0JY-01	ETNK2	ENST00000367201.3,ENST00000367202.4	chr1	204110442:204110585:204115769:204115892:204118830:204119009,	204115770	204115892	204115879	204115879	Nonsense_Mutation	C	A	p.E178*
UCEC	TCGA-BS-A0UV-01	RBBP5	ENST00000264515.6,ENST00000367164.1	chr1	205066453:205066523:205068116:205068234:205068868:205068940,	205068117	205068234	205068201	205068201	Nonsense_Mutation	C	A	p.E338*
UCEC	TCGA-B5-A0JY-01	RBBP5	ENST00000264515.6,ENST00000367164.1	chr1	205066453:205066523:205068116:205068234:205068868:205068940,	205068117	205068234	205068201	205068201	Nonsense_Mutation	C	A	p.E338*
UCEC	TCGA-D1-A17Q-01	FCAMR	ENST00000324863.2,ENST00000324852.4	chr1	207133023:207133142:207133766:207134568:207135557:207135896,	207133767	207134568	207134251	207134251	Nonsense_Mutation	C	A	p.E324*
UCEC	TCGA-BS-A0UV-01	C4BPB	ENST00000492730.1	chr1	207262238:207262291:207262826:207262934:207263652:207263826,	207262827	207262934	207262916	207262916	Nonsense_Mutation	C	T	p.R14*
UCEC	TCGA-AX-A0J0-01	C4BPA	ENST00000367070.3	chr1	207307748:207307937:207314450:207314621:207317162:207317330,	207314451	207314621	207314502	207314502	Nonsense_Mutation	C	A	p.S442*
UCEC	TCGA-AX-A0J0-01	C4BPA	ENST00000367070.3	chr1	207307748:207307937:207314450:207314621:207317162:207317330,	207314451	207314621	207314519	207314519	Nonsense_Mutation	G	T	p.E448*
UCEC	TCGA-B5-A11N-01	C4BPA	ENST00000367070.3	chr1	207307748:207307937:207314450:207314621:207317162:207317330,	207314451	207314621	207314519	207314519	Nonsense_Mutation	G	T	p.E448*
UCEC	TCGA-BS-A0UV-01	CD46	ENST00000441839.2,ENST00000358170.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1,ENST00000367047.1	chr1	207932983:207933069:207934593:207934791:207940357:207940462,	207934594	207934791	207934629	207934629	Nonsense_Mutation	G	T	p.G171*
UCEC	TCGA-BS-A0UF-01	LAMB3	ENST00000415782.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209811252:209811326:209811878:209811993:209823308:209823463,	209811879	209811993	209811991	209811991	Nonsense_Mutation	C	T	p.W62*
UCEC	TCGA-AX-A0J1-01	HSD11B1	ENST00000261465.1,ENST00000367028.2,ENST00000367027.3	chr1	209880372:209880473:209905780:209905924:209907648:209908209,	209905781	209905924	209905924	209905924	Nonsense_Mutation	G	T	p.E221*
UCEC	TCGA-B5-A11E-01	IRF6	ENST00000542854.1	chr1	209968634:209968763:209969692:209969897:209974584:209974761,209968634:209968763:209969692:209969897:209979291:209979389,	209969693	209969897	209969892	209969892	Nonsense_Mutation	C	T	p.W60*
UCEC	TCGA-BS-A0UV-01	HHAT	ENST00000391905.3,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000261458.3	chr1	210502296:210502448:210536195:210536263:210560811:210560925,210522276:210522410:210536195:210536263:210560811:210560925,	210536196	210536263	210536252	210536252	Nonsense_Mutation	G	T	p.G50*
UCEC	TCGA-D1-A15X-01	HHAT	ENST00000426968.1,ENST00000537898.1	chr1	210573811:210574006:210577807:210578023:210591497:210591669,210560811:210560925:210577807:210578023:210591497:210591669,	210577808	210578023	210577980	210577980	Nonsense_Mutation	T	G	p.L214*
UCEC	TCGA-AX-A0J1-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000367009.1,ENST00000391905.3,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210686496:210686532:210761241:210761443:210796869:210797014,	210761242	210761443	210761332	210761332	Nonsense_Mutation	G	A	p.W378*
UCEC	TCGA-AP-A056-01	TRAF5	ENST00000488428.1	chr1	211529708:211529810:211533223:211533418:211534043:211534121,	211533224	211533418	211533365	211533365	Nonsense_Mutation	C	T	p.R164*
UCEC	TCGA-AP-A056-01	TRAF5	ENST00000336184.2,ENST00000261464.5,ENST00000367004.3	chr1	211529708:211529810:211533253:211533418:211534043:211534121,	211533254	211533418	211533365	211533365	Nonsense_Mutation	C	T	p.R164*
UCEC	TCGA-AX-A05Z-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000366992.3,ENST00000440600.2,ENST00000366993.3	chr1	212180591:212180791:212184716:212184763:212190227:212190365,	212184717	212184763	212184729	212184729	Nonsense_Mutation	C	A	p.E182*
UCEC	TCGA-AX-A05Z-01	PPP2R5A	ENST00000479259.1	chr1	212480124:212480242:212502476:212502673:212506838:212506940,	212502477	212502673	212502578	212502578	Nonsense_Mutation	G	T	p.E95*
UCEC	TCGA-B5-A11E-01	PPP2R5A	ENST00000479259.1	chr1	212480124:212480242:212502476:212502673:212506838:212506940,	212502477	212502673	212502578	212502578	Nonsense_Mutation	G	T	p.E95*
UCEC	TCGA-D1-A17Q-01	FLVCR1	ENST00000419102.1,ENST00000366971.4	chr1	213058634:213058738:213061232:213061343:213061830:213061901,	213061233	213061343	213061290	213061290	Nonsense_Mutation	C	A	p.S217*
UCEC	TCGA-AP-A056-01	RPS6KC1	ENST00000543470.1	chr1	213302869:213303232:213341200:213341316:213403839:213403887,	213341201	213341316	213341224	213341224	Nonsense_Mutation	G	T	p.E287*
UCEC	TCGA-BS-A0UF-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213414983	213414983	Nonsense_Mutation	G	T	p.E722*
UCEC	TCGA-B5-A0JY-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814274	214814274	Nonsense_Mutation	G	T	p.E865*
UCEC	TCGA-AP-A051-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214815000	214815000	Nonsense_Mutation	C	T	p.Q1107*
UCEC	TCGA-BS-A0TC-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818329	214818329	Nonsense_Mutation	G	T	p.E1806*
UCEC	TCGA-B5-A11E-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818809	214818809	Nonsense_Mutation	G	T	p.E1966*
UCEC	TCGA-AP-A056-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819670	214819670	Nonsense_Mutation	G	T	p.E2253*
UCEC	TCGA-AP-A0LM-01	KCTD3	ENST00000259154.4	chr1	215753251:215753342:215759837:215760028:215768697:215768813,	215759838	215760028	215759845	215759845	Nonsense_Mutation	G	T	p.E212*
UCEC	TCGA-BS-A0UV-01	GPATCH2	ENST00000366935.3	chr1	217622590:217622679:217665021:217665092:217671697:217671737,	217665022	217665092	217665071	217665071	Nonsense_Mutation	G	A	p.R410*
UCEC	TCGA-BS-A0UF-01	SPATA17	ENST00000366933.4	chr1	217804665:217804788:217822223:217822313:217824438:217824520,	217822224	217822313	217822288	217822288	Nonsense_Mutation	G	T	p.G45*
UCEC	TCGA-AX-A05Z-01	IARS2	ENST00000302637.5	chr1	220267454:220267825:220269445:220269568:220273831:220273991,	220269446	220269568	220269471	220269471	Nonsense_Mutation	C	A	p.S98*
UCEC	TCGA-B5-A0JY-01	RAB3GAP2	ENST00000358951.2,ENST00000237724.5	chr1	220369591:220369740:220375617:220375716:220379248:220379348,	220375618	220375716	220375667	220375667	Nonsense_Mutation	C	A	p.E156*
UCEC	TCGA-BS-A0UF-01	TP53BP2	ENST00000343537.7,ENST00000391878.2	chr1	223990432:223990597:223990972:223991154:223991875:223992050,	223990973	223991154	223991077	223991077	Nonsense_Mutation	C	A	p.E243*
UCEC	TCGA-B5-A0JY-01	TP53BP2	ENST00000472180.1,ENST00000343537.7	chr1	224001941:224002055:224008921:224009069:224033355:224033496,	224008922	224009069	224008970	224008970	Nonsense_Mutation	C	A	p.E43*
UCEC	TCGA-AX-A05Z-01	FBXO28	ENST00000523990.1	chr1	224321775:224321914:224340843:224341039:224345053:224345272,224318173:224318283:224340843:224341039:224345053:224345724,	224340844	224341039	224340922	224340922	Nonsense_Mutation	G	T	p.E199*
UCEC	TCGA-B5-A0JR-01	NVL	ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000469075.1,ENST00000281701.6	chr1	224455735:224455835:224463040:224463160:224468824:224468887,	224463041	224463160	224463138	224463138	Nonsense_Mutation	G	T	p.C544*
UCEC	TCGA-B5-A0JY-01	CNIH4	ENST00000366856.3,ENST00000465271.1	chr1	224548196:224548265:224553580:224553693:224563496:224563700,224548196:224548265:224553580:224553693:224558984:224558999,	224553581	224553693	224553593	224553593	Nonsense_Mutation	G	T	p.E51*
UCEC	TCGA-B5-A11E-01	DNAH14	ENST00000430092.1,ENST00000400952.3,ENST00000366849.1,ENST00000486657.1,ENST00000439375.2,ENST00000366850.3,ENST00000366848.1	chr1	225142740:225142800:225147854:225148004:225152180:225152311,	225147855	225148004	225147866	225147866	Nonsense_Mutation	G	T	p.E77*
UCEC	TCGA-B5-A11E-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226027605:226027738:226030066:226030175:226032198:226032324,	226030067	226030175	226030147	226030147	Nonsense_Mutation	C	T	p.R338*
UCEC	TCGA-AP-A0LM-01	ACBD3	ENST00000366812.5	chr1	226332379:226334522:226340035:226340320:226342347:226342534,	226340036	226340320	226340195	226340195	Nonsense_Mutation	G	A	p.R406*
UCEC	TCGA-D1-A167-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227300012:227300123:227300371:227300614:227307504:227307638,	227300372	227300614	227300593	227300593	Nonsense_Mutation	G	A	p.R557*
UCEC	TCGA-AP-A059-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228433113:228433389:228434228:228434504:228437665:228437941,	228434229	228434504	228434423	228434423	Nonsense_Mutation	C	T	p.Q1318*
UCEC	TCGA-BS-A0UF-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000441106.1,ENST00000366707.4,ENST00000422127.1	chr1	228537590:228537758:228538541:228538644:228539021:228539151,	228538542	228538644	228538592	228538592	Nonsense_Mutation	G	T	p.E6123*
UCEC	TCGA-AX-A05Z-01	CAPN9	ENST00000354537.1	chr1	230883178:230883455:230891082:230891152:230895257:230895376,	230891083	230891152	230891101	230891101	Nonsense_Mutation	G	T	p.E78*
UCEC	TCGA-AP-A0LM-01	TTC13	ENST00000366662.4,ENST00000414259.1,ENST00000481976.2,ENST00000522821.1,ENST00000366661.4	chr1	231090078:231090149:231093969:231094045:231096954:231097049,	231093970	231094045	231093979	231093979	Nonsense_Mutation	C	A	p.E145*
UCEC	TCGA-AX-A05Z-01	DISC1	ENST00000366633.3,ENST00000366632.2,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000422590.2,ENST00000602713.1,ENST00000602822.1,ENST00000366637.3	chr1	231906580:231906816:231930987:231931042:231935853:231935956,	231930988	231931042	231931028	231931028	Nonsense_Mutation	G	T	p.E559*
UCEC	TCGA-BS-A0UF-01	NTPCR	ENST00000366628.5,ENST00000490807.1,ENST00000366627.4	chr1	233086587:233086878:233091302:233091465:233092092:233092189,233086385:233086490:233091302:233091465:233092092:233092189,	233091303	233091465	233091386	233091386	Nonsense_Mutation	G	T	p.E40*
UCEC	TCGA-AX-A05Z-01	NTPCR	ENST00000496662.1	chr1	233092097:233092189:233105654:233105864:233113908:233114228,233086385:233086490:233105654:233105864:233113908:233114228,	233105655	233105864	233105829	233105829	Nonsense_Mutation	G	T	p.E157*
UCEC	TCGA-D1-A17Q-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3,ENST00000491632.1,ENST00000444620.1	chr1	235344899:235346108:235357327:235357526:235359345:235359430,	235357328	235357526	235357358	235357358	Nonsense_Mutation	C	A	p.E699*
UCEC	TCGA-B5-A11E-01	ARID4B	ENST00000366603.2,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3	chr1	235359345:235359430:235377083:235377341:235383107:235383283,	235377084	235377341	235377221	235377221	Nonsense_Mutation	G	T	p.C568*
UCEC	TCGA-AP-A056-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944236	235944236	Nonsense_Mutation	C	A	p.E1715*
UCEC	TCGA-B5-A0JY-01	GPR137B	ENST00000454895.1,ENST00000419162.1,ENST00000366592.3	chr1	236343178:236343328:236347077:236347206:236368425:236368498,	236347078	236347206	236347187	236347187	Nonsense_Mutation	G	T	p.E180*
UCEC	TCGA-B5-A0JY-01	RGS7	ENST00000366562.4,ENST00000407727.1,ENST00000366563.1,ENST00000366565.1,ENST00000331110.7,ENST00000366564.1	chr1	241099899:241100006:241146378:241146429:241261965:241262062,	241146379	241146429	241146388	241146388	Nonsense_Mutation	C	A	p.E73*
UCEC	TCGA-AP-A051-01	EXO1	ENST00000423131.1	chr1	242015593:242015713:242016659:242016783:242020646:242020784,242013793:242013888:242016659:242016783:242020646:242020784,	242016660	242016783	242016664	242016664	Nonsense_Mutation	C	T	p.R96*
UCEC	TCGA-BS-A0UV-01	SDCCAG8	ENST00000355875.4,ENST00000366541.3,ENST00000343783.6,ENST00000391846.1,ENST00000435549.1	chr1	243468014:243468079:243471290:243471479:243480056:243480144,	243471291	243471479	243471352	243471352	Nonsense_Mutation	G	T	p.E268*
UCEC	TCGA-BS-A0UV-01	C1orf100	ENST00000308105.4	chr1	244538673:244538769:244541768:244541941:244552252:244552393,	244541769	244541941	244541860	244541860	Nonsense_Mutation	C	T	p.R82*
UCEC	TCGA-B5-A0JY-01	C1orf100	ENST00000308105.4	chr1	244538673:244538769:244541768:244541941:244552252:244552393,	244541769	244541941	244541860	244541860	Nonsense_Mutation	C	T	p.R82*
UCEC	TCGA-B5-A11N-01	HNRNPU	ENST00000476241.1	chr1	245025762:245025836:245025920:245026032:245026918:245027773,245025762:245025836:245025920:245026032:245026975:245027793,	245025921	245026032	245025940	245025940	Nonsense_Mutation	C	A	p.E262*
UCEC	TCGA-AP-A051-01	CNST	ENST00000366513.4	chr1	246810440:246811339:246823500:246823636:246829001:246831886,	246823501	246823636	246823594	246823594	Nonsense_Mutation	C	T	p.R644*
UCEC	TCGA-B5-A0JY-01	ACP1	ENST00000484464.1,ENST00000453390.1,ENST00000442386.1,ENST00000272065.5,ENST00000463831.1,ENST00000272067.6	chr2	272036:272150:276979:277085:277226:277261,275139:275201:276979:277085:277226:277261,	276980	277085	277002	277002	Nonsense_Mutation	C	T	p.Q106*
UCEC	TCGA-B5-A11E-01	TPO	ENST00000345913.4,ENST00000349624.3,ENST00000329066.4,ENST00000382198.1,ENST00000446278.1,ENST00000337415.3,ENST00000382201.3	chr2	1499778:1499969:1500366:1500537:1507719:1507851,	1500367	1500537	1500507	1500507	Nonsense_Mutation	G	T	p.G786*
UCEC	TCGA-AX-A0J0-01	TRAPPC12	ENST00000473348.1,ENST00000437733.1,ENST00000382110.2,ENST00000461577.1,ENST00000497597.1,ENST00000324266.5	chr2	3476191:3476373:3481465:3481566:3482616:3482642,3469367:3469466:3481465:3481566:3482616:3482642,	3481466	3481566	3481527	3481527	Nonsense_Mutation	T	G	p.L613*
UCEC	TCGA-AX-A0J0-01	TRAPPC12	ENST00000415624.1	chr2	3469367:3469466:3481462:3481566:3482616:3482642,	3481463	3481566	3481527	3481527	Nonsense_Mutation	T	G	p.L613*
UCEC	TCGA-BS-A0UF-01	COLEC11	ENST00000236693.7	chr2	3660900:3660972:3673603:3673682:3685122:3685194,	3673604	3673682	3673667	3673667	Nonsense_Mutation	G	T	p.E60*
UCEC	TCGA-BS-A0UV-01	ITGB1BP1	ENST00000488451.1,ENST00000494563.1,ENST00000482798.1,ENST00000360635.3,ENST00000492079.1,ENST00000355346.4,ENST00000456913.2,ENST00000359712.3,ENST00000463190.1,ENST00000238091.4	chr2	9548280:9548334:9552397:9552534:9563501:9563559,9548280:9548334:9552397:9552534:9558754:9558861,9548280:9548334:9552397:9552534:9554306:9554385,	9552398	9552534	9552496	9552496	Nonsense_Mutation	G	A	p.R64*
UCEC	TCGA-BS-A0UV-01	ITGB1BP1	ENST00000483795.1	chr2	9548280:9548334:9552196:9552534:9554306:9554385,	9552197	9552534	9552496	9552496	Nonsense_Mutation	G	A	p.R64*
UCEC	TCGA-BS-A0UF-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1	chr2	10808783:10808849:10811679:10811816:10813645:10813683,	10811680	10811816	10811786	10811786	Nonsense_Mutation	C	A	p.E120*
UCEC	TCGA-B5-A11E-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11767091:11767230:11770073:11770235:11772034:11772239,	11770074	11770235	11770212	11770212	Nonsense_Mutation	C	T	p.R1530*
UCEC	TCGA-D1-A16Y-01	SMC6	ENST00000402989.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17851689:17851842:17860125:17860231:17864904:17865030,	17860126	17860231	17860143	17860143	Nonsense_Mutation	C	A	p.E965*
UCEC	TCGA-B5-A11F-01	HS1BP3	ENST00000304031.3	chr2	20817581:20819005:20823655:20823791:20824491:20824533,	20823656	20823791	20823725	20823725	Nonsense_Mutation	G	A	p.Q37*
UCEC	TCGA-AP-A059-01	HS1BP3	ENST00000304031.3	chr2	20817581:20819005:20823655:20823791:20824491:20824533,	20823656	20823791	20823725	20823725	Nonsense_Mutation	G	A	p.Q37*
UCEC	TCGA-B5-A0JY-01	ATAD2B	ENST00000238789.5,ENST00000381024.4,ENST00000474583.1	chr2	23977516:23977644:23980287:23980971:23985078:23985216,	23980288	23980971	23980404	23980404	Nonsense_Mutation	G	A	p.R597*
UCEC	TCGA-AP-A056-01	ITSN2	ENST00000361999.3	chr2	24498581:24498718:24509080:24509220:24516556:24516644,	24509081	24509220	24509131	24509131	Nonsense_Mutation	C	A	p.E605*
UCEC	TCGA-D1-A16X-01	ITSN2	ENST00000361999.3	chr2	24498581:24498718:24509080:24509220:24516556:24516644,	24509081	24509220	24509155	24509155	Nonsense_Mutation	C	A	p.E597*
UCEC	TCGA-A5-A0VP-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000348332.3,ENST00000405141.1	chr2	24881529:24881635:24888617:24888784:24896234:24896332,	24888618	24888784	24888781	24888781	Nonsense_Mutation	C	T	p.Q85*
UCEC	TCGA-AX-A0J0-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24951176:24951345:24952369:24952684:24962300:24962402,	24952370	24952684	24952646	24952646	Nonsense_Mutation	C	T	p.R1055*
UCEC	TCGA-BS-A0UF-01	EFR3B	ENST00000401432.3,ENST00000403714.3,ENST00000402191.1	chr2	25314193:25314270:25315871:25315999:25326505:25326656,	25315872	25315999	25315992	25315992	Nonsense_Mutation	C	T	p.R69*
UCEC	TCGA-AX-A0J0-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150167	27150167	Nonsense_Mutation	C	A	p.S156*
UCEC	TCGA-B5-A11E-01	SLC5A6	ENST00000310574.3,ENST00000408041.1,ENST00000488743.2	chr2	27423303:27423447:27423865:27423981:27424217:27424321,	27423866	27423981	27423973	27423973	Nonsense_Mutation	G	A	p.R553*
UCEC	TCGA-BS-A0UF-01	PPM1G	ENST00000350803.4,ENST00000472077.1,ENST00000344034.4	chr2	27604992:27605095:27605342:27605472:27606232:27606467,	27605343	27605472	27605374	27605374	Nonsense_Mutation	C	A	p.E434*
UCEC	TCGA-BS-A0UV-01	PPM1G	ENST00000350803.4,ENST00000344034.4	chr2	27606818:27606959:27607539:27607955:27608613:27608746,	27607540	27607955	27607947	27607947	Nonsense_Mutation	C	A	p.E140*
UCEC	TCGA-BS-A0UV-01	IFT172	ENST00000507184.1,ENST00000450564.1,ENST00000260570.3,ENST00000509128.1	chr2	27672160:27672247:27672365:27672429:27672557:27672667,	27672366	27672429	27672398	27672398	Nonsense_Mutation	C	A	p.E1398*
UCEC	TCGA-AX-A05Z-01	GPN1	ENST00000424214.1,ENST00000264718.3,ENST00000503738.1,ENST00000458167.2,ENST00000461249.1,ENST00000610189.1,ENST00000515877.1,ENST00000407583.3	chr2	27861076:27861122:27861751:27861898:27862909:27862992,	27861752	27861898	27861838	27861838	Nonsense_Mutation	C	A	p.Y233*
UCEC	TCGA-AX-A05Z-01	SLC4A1AP	ENST00000427424.1	chr2	27887333:27887444:27887966:27888162:27890134:27890257,	27887967	27888162	27887982	27887982	Nonsense_Mutation	C	T	p.R281*
UCEC	TCGA-B5-A11E-01	CAPN14	ENST00000444918.2,ENST00000403897.3,ENST00000398824.2	chr2	31399452:31399508:31399891:31400008:31400611:31400684,	31399892	31400008	31399904	31399904	Nonsense_Mutation	C	A	p.E654*
UCEC	TCGA-D1-A16X-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475303	32475303	Nonsense_Mutation	C	A	p.E544*
UCEC	TCGA-AP-A059-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476527	32476527	Nonsense_Mutation	C	A	p.E136*
UCEC	TCGA-AP-A056-01	YIPF4	ENST00000437765.1	chr2	32503299:32503303:32515551:32515705:32523302:32523380,	32515552	32515705	32515564	32515564	Nonsense_Mutation	C	A	p.S31*
UCEC	TCGA-AP-A0LM-01	YIPF4	ENST00000437765.1	chr2	32517245:32517417:32523302:32523380:32526450:32526564,32515551:32515705:32523302:32523380:32526450:32526564,	32523303	32523380	32523378	32523378	Nonsense_Mutation	G	T	p.E161*
UCEC	TCGA-D1-A103-01	BIRC6	ENST00000421745.2	chr2	32718606:32718734:32724613:32725176:32726779:32726955,	32724614	32725176	32724666	32724666	Nonsense_Mutation	G	T	p.E2841*
UCEC	TCGA-A5-A0GP-01	BIRC6	ENST00000421745.2	chr2	32743883:32744013:32749954:32750086:32750530:32750695,	32749955	32750086	32750029	32750029	Nonsense_Mutation	G	T	p.E3900*
UCEC	TCGA-BS-A0UF-01	BIRC6	ENST00000465130.1,ENST00000471232.1,ENST00000421745.2	chr2	32828072:32828150:32832521:32832710:32836514:32836648,	32832522	32832710	32832645	32832645	Nonsense_Mutation	C	T	p.R4732*
UCEC	TCGA-B5-A0JY-01	STRN	ENST00000379213.2,ENST00000263918.4	chr2	37078142:37078250:37082354:37082495:37084998:37085166,	37082355	37082495	37082373	37082373	Nonsense_Mutation	C	A	p.E654*
UCEC	TCGA-AP-A059-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37235753:37235991:37240983:37241163:37246951:37247020,	37240984	37241163	37241150	37241150	Nonsense_Mutation	C	T	p.W1373*
UCEC	TCGA-D1-A17Q-01	EIF2AK2	ENST00000405334.1,ENST00000233057.4,ENST00000395127.2,ENST00000462861.1	chr2	37334488:37334538:37334616:37334670:37336336:37336438,	37334617	37334670	37334619	37334619	Nonsense_Mutation	C	A	p.E511*
UCEC	TCGA-AX-A0J0-01	ATL2	ENST00000539122.1,ENST00000378954.4,ENST00000402054.1,ENST00000405384.2,ENST00000452935.2	chr2	38523049:38523255:38525285:38525717:38526397:38526469,	38525286	38525717	38525333	38525333	Nonsense_Mutation	C	A	p.E529*
UCEC	TCGA-B5-A0JY-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39250286:39250366:39251150:39251278:39262352:39262451,	39251151	39251278	39251269	39251269	Nonsense_Mutation	C	A	p.E362*
UCEC	TCGA-D1-A17Q-01	DYNC2LI1	ENST00000378587.3,ENST00000489222.2,ENST00000260605.8,ENST00000443170.3,ENST00000605786.1	chr2	44023028:44023097:44023856:44023934:44027979:44028056,	44023857	44023934	44023899	44023899	Nonsense_Mutation	C	T	p.R207*
UCEC	TCGA-B5-A0JY-01	LRPPRC	ENST00000409659.1,ENST00000409946.1	chr2	44206964:44207087:44209376:44209573:44222937:44223117,	44209377	44209573	44209440	44209440	Nonsense_Mutation	G	A	p.R95*
UCEC	TCGA-AX-A05Z-01	SLC3A1	ENST00000409387.1,ENST00000409741.1,ENST00000260649.6,ENST00000409229.3,ENST00000410056.3	chr2	44508525:44508680:44513170:44513296:44527109:44527208,	44513171	44513296	44513288	44513288	Nonsense_Mutation	G	T	p.E295*
UCEC	TCGA-BS-A0UF-01	SRBD1	ENST00000263736.4	chr2	45826587:45826974:45829041:45829222:45832500:45832580,	45829042	45829222	45829068	45829068	Nonsense_Mutation	C	A	p.E79*
UCEC	TCGA-BS-A0UV-01	PRKCE	ENST00000306156.3,ENST00000394874.1	chr2	46228542:46228685:46231680:46231777:46234600:46234800,	46231681	46231777	46231741	46231741	Nonsense_Mutation	C	T	p.R343*
UCEC	TCGA-D1-A103-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607728	46607728	Nonsense_Mutation	G	A	p.W639*
UCEC	TCGA-BS-A0UF-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48025792	48025792	Nonsense_Mutation	G	T	p.E224*
UCEC	TCGA-BS-A0UF-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48025792	48025792	Nonsense_Mutation	G	T	p.E224*
UCEC	TCGA-B5-A0JY-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48027043	48027043	Nonsense_Mutation	G	T	p.E641*
UCEC	TCGA-B5-A0JY-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48027043	48027043	Nonsense_Mutation	G	T	p.E641*
UCEC	TCGA-D1-A17Q-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48027844	48027844	Nonsense_Mutation	G	T	p.E908*
UCEC	TCGA-D1-A17Q-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48027844	48027844	Nonsense_Mutation	G	T	p.E908*
UCEC	TCGA-AX-A05Z-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48027958	48027958	Nonsense_Mutation	G	T	p.E946*
UCEC	TCGA-AX-A05Z-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48027958	48027958	Nonsense_Mutation	G	T	p.E946*
UCEC	TCGA-B5-A11E-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48028263	48028263	Nonsense_Mutation	G	A	p.W1047*
UCEC	TCGA-B5-A11E-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48028263	48028263	Nonsense_Mutation	G	A	p.W1047*
UCEC	TCGA-AP-A0LM-01	MSH6	ENST00000234420.5,ENST00000445503.1,ENST00000538136.1,ENST00000540021.1	chr2	48033342:48033497:48033590:48033790:48033917:48034039,	48033591	48033790	48033753	48033753	Nonsense_Mutation	G	T	p.E1322*
UCEC	TCGA-AP-A056-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000404971.1	chr2	50850451:50850753:51149006:51149018:51149795:51149825,	51149007	51149018	51149007	51149007	Nonsense_Mutation	C	A	p.G311*
UCEC	TCGA-BS-A0UF-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000389980.3	chr2	54850615:54850733:54851940:54852099:54853068:54853371,	54851941	54852099	54851977	54851977	Nonsense_Mutation	G	T	p.E407*
UCEC	TCGA-D1-A103-01	SPTBN1	ENST00000333896.5,ENST00000356805.4	chr2	54864849:54864940:54870119:54870266:54871459:54871723,	54870120	54870266	54870248	54870248	Nonsense_Mutation	G	A	p.W1329*
UCEC	TCGA-AP-A0LM-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252495	55252495	Nonsense_Mutation	C	A	p.E914*
UCEC	TCGA-AX-A05Z-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252930	55252930	Nonsense_Mutation	C	A	p.E769*
UCEC	TCGA-AX-A05Z-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544424	55544424	Nonsense_Mutation	C	A	p.E1221*
UCEC	TCGA-D1-A103-01	REL	ENST00000394479.3	chr2	61108790:61108985:61118817:61118960:61121531:61121680,	61118818	61118960	61118895	61118895	Nonsense_Mutation	C	T	p.R30*
UCEC	TCGA-AX-A05Z-01	PUS10	ENST00000316752.6,ENST00000407787.1,ENST00000602599.1	chr2	61233691:61233778:61235895:61236150:61238899:61239040,	61235896	61236150	61235925	61235925	Nonsense_Mutation	C	A	p.E118*
UCEC	TCGA-B5-A11E-01	KIAA1841	ENST00000453873.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61315492:61315603:61319598:61319722:61324834:61324987,	61319599	61319722	61319611	61319611	Nonsense_Mutation	G	A	p.W367*
UCEC	TCGA-AX-A0J0-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067001	62067001	Nonsense_Mutation	G	A	p.R380*
UCEC	TCGA-AX-A0J0-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067001	62067001	Nonsense_Mutation	G	A	p.R380*
UCEC	TCGA-AP-A056-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067079	62067079	Nonsense_Mutation	G	A	p.R354*
UCEC	TCGA-AP-A056-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067079	62067079	Nonsense_Mutation	G	A	p.R354*
UCEC	TCGA-D1-A103-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067079	62067079	Nonsense_Mutation	G	A	p.R354*
UCEC	TCGA-D1-A103-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067079	62067079	Nonsense_Mutation	G	A	p.R354*
UCEC	TCGA-BS-A0UF-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067193	62067193	Nonsense_Mutation	C	A	p.E316*
UCEC	TCGA-BS-A0UF-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067193	62067193	Nonsense_Mutation	C	A	p.E316*
UCEC	TCGA-BS-A0UV-01	WDPCP	ENST00000490935.1	chr2	63711737:63711797:63712050:63712121:63713675:63713720,63711737:63711797:63712050:63712121:63714580:63714628,	63712051	63712121	63712074	63712074	Nonsense_Mutation	G	A	p.R101*
UCEC	TCGA-AP-A059-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64780403	64780403	Nonsense_Mutation	C	T	p.R599*
UCEC	TCGA-AX-A05Z-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64780403	64780403	Nonsense_Mutation	C	T	p.R599*
UCEC	TCGA-D1-A17Q-01	RAB1A	ENST00000409784.3	chr2	65316072:65316204:65318116:65318212:65331867:65331940,65316072:65316204:65318116:65318212:65325104:65325198,	65318117	65318212	65318185	65318185	Nonsense_Mutation	G	A	p.R74*
UCEC	TCGA-AP-A0LM-01	RAB1A	ENST00000409784.3	chr2	65316072:65316204:65318116:65318212:65331867:65331940,65316072:65316204:65318116:65318212:65325104:65325198,	65318117	65318212	65318185	65318185	Nonsense_Mutation	G	A	p.R74*
UCEC	TCGA-D1-A16J-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049695	69049695	Nonsense_Mutation	C	T	p.Q334*
UCEC	TCGA-D1-A103-01	GFPT1	ENST00000357308.4,ENST00000361060.5	chr2	69586399:69586458:69590676:69590802:69597132:69597240,	69590677	69590802	69590776	69590776	Nonsense_Mutation	C	A	p.E84*
UCEC	TCGA-AP-A0LM-01	ANXA4	ENST00000394295.4,ENST00000477632.1,ENST00000460439.1,ENST00000484219.1,ENST00000487351.2,ENST00000409920.1	chr2	70008693:70008706:70015185:70015273:70031664:70031721,	70015186	70015273	70015195	70015195	Nonsense_Mutation	G	T	p.G7*
UCEC	TCGA-D1-A16X-01	ZNF638	ENST00000494621.1,ENST00000466975.1,ENST00000377802.2,ENST00000410075.1,ENST00000409544.1,ENST00000475743.1,ENST00000264447.4,ENST00000355812.3,ENST00000464375.1,ENST00000466330.1	chr2	71590282:71590321:71591083:71591382:71592558:71592618,	71591084	71591382	71591334	71591334	Nonsense_Mutation	C	T	p.R557*
UCEC	TCGA-B5-A11E-01	ZNF638	ENST00000472758.1	chr2	71654479:71654544:71655660:71655781:71658456:71658558,	71655661	71655781	71655769	71655769	Nonsense_Mutation	C	T	p.Q1880*
UCEC	TCGA-B5-A11E-01	ZNF638	ENST00000409544.1,ENST00000461991.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71654479:71654544:71655676:71655781:71658456:71658558,	71655677	71655781	71655769	71655769	Nonsense_Mutation	C	T	p.Q1880*
UCEC	TCGA-B5-A0JY-01	ALMS1	ENST00000423048.1	chr2	73682288:73682422:73716760:73717285:73746901:73747143,	73716761	73717285	73717091	73717091	Nonsense_Mutation	C	T	p.R2668*
UCEC	TCGA-B5-A0JY-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717091	73717091	Nonsense_Mutation	C	T	p.R2668*
UCEC	TCGA-AP-A059-01	TPRKB	ENST00000463231.1	chr2	73959289:73959412:73961654:73961718:73964428:73964462,	73961655	73961718	73961663	73961663	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-AP-A059-01	TPRKB	ENST00000409716.2	chr2	73959710:73959827:73961555:73961715:73964428:73964462,	73961556	73961715	73961663	73961663	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-AP-A059-01	TPRKB	ENST00000497464.1,ENST00000272424.5,ENST00000484969.1	chr2	73959710:73959827:73961555:73961718:73964428:73964462,73959289:73959412:73961555:73961718:73964428:73964462,	73961556	73961718	73961663	73961663	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-AP-A059-01	TPRKB	ENST00000462166.1	chr2	73959289:73959412:73961654:73961715:73964428:73964462,	73961655	73961715	73961663	73961663	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-B5-A11E-01	DCTN1	ENST00000407639.2,ENST00000361874.3,ENST00000394003.3	chr2	74590420:74590554:74590740:74590755:74592201:74592368,	74590741	74590755	74590744	74590744	Nonsense_Mutation	G	A	p.R1070*
UCEC	TCGA-B5-A0JY-01	HTRA2	ENST00000484352.1,ENST00000467961.1,ENST00000462909.1,ENST00000258080.3	chr2	74758982:74759052:74759745:74759841:74759946:74760279,	74759746	74759841	74759768	74759768	Nonsense_Mutation	C	T	p.R380*
UCEC	TCGA-AP-A0LM-01	MRPL19	ENST00000358788.6,ENST00000476622.1,ENST00000409374.1,ENST00000393909.2	chr2	75874227:75874345:75879267:75879386:75879648:75879783,	75879268	75879386	75879329	75879329	Nonsense_Mutation	G	T	p.E95*
UCEC	TCGA-AX-A05Z-01	SUCLG1	ENST00000487809.1,ENST00000393868.2	chr2	84652538:84652727:84658631:84658783:84660475:84660559,	84658632	84658783	84658736	84658736	Nonsense_Mutation	C	A	p.E241*
UCEC	TCGA-B5-A11E-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84744946:84745175:84752688:84752862:84756027:84756290,	84752689	84752862	84752746	84752746	Nonsense_Mutation	C	T	p.R95*
UCEC	TCGA-BS-A0UF-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84752692:84752862:84756027:84756290:84771356:84771453,	84756028	84756290	84756154	84756154	Nonsense_Mutation	G	T	p.E176*
UCEC	TCGA-B5-A0JY-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84756027:84756290:84771356:84771624:84774391:84774526,	84771357	84771624	84771460	84771460	Nonsense_Mutation	C	T	p.R256*
UCEC	TCGA-BS-A0UV-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	84931190:84931426:84932609:84932871:84934019:84934143,	84932610	84932871	84932821	84932821	Nonsense_Mutation	C	T	p.R2893*
UCEC	TCGA-BS-A0UV-01	KCMF1	ENST00000409785.4	chr2	85198215:85198590:85255011:85255179:85262138:85262248,	85255012	85255179	85255047	85255047	Nonsense_Mutation	C	T	p.R18*
UCEC	TCGA-AP-A059-01	IMMT	ENST00000410111.3,ENST00000409258.2,ENST00000474969.1,ENST00000442664.2,ENST00000254636.5,ENST00000419070.2,ENST00000409051.2,ENST00000449247.2	chr2	86386658:86386794:86389098:86389202:86393630:86393761,	86389099	86389202	86389120	86389120	Nonsense_Mutation	G	T	p.C146*
UCEC	TCGA-AP-A059-01	IMMT	ENST00000490238.1	chr2	86386658:86386794:86389074:86389202:86393630:86393761,	86389075	86389202	86389120	86389120	Nonsense_Mutation	G	T	p.C146*
UCEC	TCGA-AX-A05Z-01	IMMT	ENST00000410111.3,ENST00000474969.1,ENST00000442664.2	chr2	86398330:86398468:86400772:86400884:86406555:86406745,	86400773	86400884	86400836	86400836	Nonsense_Mutation	C	A	p.E120*
UCEC	TCGA-D1-A17Q-01	FABP1	ENST00000393750.3	chr2	88424012:88424105:88425694:88425867:88427469:88427560,	88425695	88425867	88425856	88425856	Nonsense_Mutation	C	A	p.E27*
UCEC	TCGA-BS-A0UV-01	FAM178B	ENST00000490605.2,ENST00000417561.3,ENST00000327896.3	chr2	97559662:97559788:97568356:97568444:97586901:97586999,	97568357	97568444	97568437	97568437	Nonsense_Mutation	G	A	p.R492*
UCEC	TCGA-AX-A0J0-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97875417:97875446:97875536:97875609:97877282:97877311,	97875537	97875609	97875579	97875579	Nonsense_Mutation	G	T	p.E943*
UCEC	TCGA-B5-A11E-01	TMEM131	ENST00000186436.5	chr2	98392305:98392481:98408848:98409447:98409857:98410016,	98408849	98409447	98409380	98409380	Nonsense_Mutation	G	A	p.R1205*
UCEC	TCGA-B5-A11N-01	TMEM131	ENST00000425805.2,ENST00000418629.2,ENST00000489507.1,ENST00000186436.5	chr2	98525120:98525161:98543888:98543950:98611938:98611995,	98543889	98543950	98543924	98543924	Nonsense_Mutation	C	A	p.E72*
UCEC	TCGA-BS-A0UJ-01	VWA3B	ENST00000477737.1,ENST00000432242.1,ENST00000495571.1,ENST00000489630.1	chr2	98920164:98920265:98928281:98928495:98928662:98928904,	98928282	98928495	98928361	98928361	Nonsense_Mutation	A	T	p.R1201*
UCEC	TCGA-BS-A0UV-01	CNGA3	ENST00000436404.2,ENST00000272602.2,ENST00000393504.1	chr2	98986401:98986539:98994149:98994263:98996637:98996817,	98994150	98994263	98994214	98994214	Nonsense_Mutation	G	T	p.G56*
UCEC	TCGA-D1-A103-01	INPP4A	ENST00000409851.3,ENST00000545415.1,ENST00000523221.1,ENST00000409016.4,ENST00000409540.3,ENST00000074304.5,ENST00000409463.1	chr2	99136511:99136617:99137149:99137194:99149839:99149919,	99137150	99137194	99137182	99137182	Nonsense_Mutation	G	T	p.E47*
UCEC	TCGA-AX-A0J0-01	INPP4A	ENST00000409851.3,ENST00000545415.1,ENST00000523221.1,ENST00000409016.4,ENST00000409540.3,ENST00000074304.5,ENST00000409463.1	chr2	99136511:99136617:99137149:99137194:99149839:99149919,	99137150	99137194	99137182	99137182	Nonsense_Mutation	G	T	p.E47*
UCEC	TCGA-A5-A0GP-01	TSGA10	ENST00000539964.1,ENST00000393483.3,ENST00000355053.4,ENST00000410001.1	chr2	99614659:99614684:99634662:99634812:99634998:99635103,	99634663	99634812	99634676	99634676	Nonsense_Mutation	G	A	p.R687*
UCEC	TCGA-AP-A0LM-01	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651698	99651698	Nonsense_Mutation	C	A	p.E537*
UCEC	TCGA-AX-A05Z-01	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651704	99651704	Nonsense_Mutation	C	A	p.E535*
UCEC	TCGA-B5-A0JY-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000465835.1,ENST00000413697.1	chr2	100024490:100024593:100027156:100027329:100029192:100029413,	100027157	100027329	100027262	100027262	Nonsense_Mutation	C	T	p.W17*
UCEC	TCGA-BS-A0UF-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000473819.1	chr2	100058778:100058931:100065797:100065966:100078957:100079084,	100065798	100065966	100065844	100065844	Nonsense_Mutation	C	A	p.E102*
UCEC	TCGA-AX-A0J1-01	REV1	ENST00000258428.3,ENST00000413697.1	chr2	100078957:100079084:100081383:100081447:100106278:100106435,	100081384	100081447	100081431	100081431	Nonsense_Mutation	G	A	p.R3*
UCEC	TCGA-D1-A17Q-01	NPAS2	ENST00000486017.1,ENST00000427413.1,ENST00000448812.1,ENST00000542504.1,ENST00000335681.5	chr2	101541607:101541756:101549371:101549463:101554214:101554304,	101549372	101549463	101549440	101549440	Nonsense_Mutation	G	T	p.E84*
UCEC	TCGA-D1-A16X-01	NPAS2	ENST00000486017.1,ENST00000427413.1,ENST00000448812.1,ENST00000542504.1,ENST00000335681.5	chr2	101541607:101541756:101549371:101549463:101554214:101554304,	101549372	101549463	101549440	101549440	Nonsense_Mutation	G	T	p.E84*
UCEC	TCGA-BS-A0UV-01	IL1R1	ENST00000409929.1,ENST00000424272.1,ENST00000428279.1,ENST00000410023.1,ENST00000409329.1,ENST00000422532.2,ENST00000409288.1,ENST00000233946.3	chr2	102781684:102781764:102782572:102782741:102785057:102785123,	102782573	102782741	102782726	102782726	Nonsense_Mutation	G	T	p.E214*
UCEC	TCGA-AP-A059-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000334376.3,ENST00000233957.1	chr2	102979120:102979178:102984284:102984528:102988412:102988578,	102984285	102984528	102984394	102984394	Nonsense_Mutation	G	A	p.W56*
UCEC	TCGA-AP-A056-01	C2orf40	ENST00000437659.1,ENST00000238044.3,ENST00000409944.1	chr2	106688299:106688347:106690341:106690499:106694220:106694356,	106690342	106690499	106690392	106690392	Nonsense_Mutation	G	T	p.E60*
UCEC	TCGA-AX-A05Z-01	C2orf40	ENST00000437659.1,ENST00000238044.3,ENST00000409944.1	chr2	106688299:106688347:106690341:106690499:106694220:106694356,	106690342	106690499	106690392	106690392	Nonsense_Mutation	G	T	p.E60*
UCEC	TCGA-D1-A16X-01	GCC2	ENST00000482325.1	chr2	109066088:109066145:109068854:109068922:109085435:109085540,	109068855	109068922	109068866	109068866	Nonsense_Mutation	G	T	p.E54*
UCEC	TCGA-AX-A0J0-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087091	109087091	Nonsense_Mutation	G	T	p.E436*
UCEC	TCGA-BS-A0UV-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087535	109087535	Nonsense_Mutation	G	T	p.E584*
UCEC	TCGA-BS-A0TC-01	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6	chr2	109098742:109098907:109099517:109099622:109100604:109100767,	109099518	109099622	109099602	109099602	Nonsense_Mutation	G	T	p.E1144*
UCEC	TCGA-B5-A11H-01	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6	chr2	109102966:109103104:109104154:109104276:109106293:109106470,	109104155	109104276	109104200	109104200	Nonsense_Mutation	C	T	p.R1326*
UCEC	TCGA-AP-A0LM-01	GCC2	ENST00000482325.1,ENST00000480863.1,ENST00000309863.6	chr2	109113425:109113565:109116008:109116210:109124015:109125853,	109116009	109116210	109116051	109116051	Nonsense_Mutation	C	T	p.R1609*
UCEC	TCGA-B5-A0JY-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383155	109383155	Nonsense_Mutation	G	T	p.E2054*
UCEC	TCGA-D1-A17Q-01	SEPT10	ENST00000397714.2,ENST00000334001.6,ENST00000415095.1,ENST00000437928.1,ENST00000545389.1,ENST00000356688.4,ENST00000397712.2	chr2	110303626:110303814:110310663:110310796:110321942:110322111,	110310664	110310796	110310678	110310678	Nonsense_Mutation	C	A	p.E383*
UCEC	TCGA-AX-A0J0-01	SEPT10	ENST00000397714.2,ENST00000334001.6,ENST00000415095.1,ENST00000437928.1,ENST00000545389.1,ENST00000356688.4,ENST00000397712.2	chr2	110303626:110303814:110310663:110310796:110321942:110322111,	110310664	110310796	110310693	110310693	Nonsense_Mutation	C	A	p.E378*
UCEC	TCGA-B5-A0JY-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113306843:113306976:113308442:113308579:113309351:113309556,	113308443	113308579	113308544	113308544	Nonsense_Mutation	G	T	p.E243*
UCEC	TCGA-AP-A051-01	RABL2A	ENST00000393165.3,ENST00000409121.2	chr2	114394943:114395063:114398470:114398582:114398929:114399027,114392627:114392707:114398470:114398582:114398932:114399027,114392627:114392707:114398470:114398582:114398929:114399027,	114398471	114398582	114398525	114398525	Nonsense_Mutation	G	T	p.E118*
UCEC	TCGA-AP-A056-01	ACTR3	ENST00000536059.1,ENST00000263238.2,ENST00000535589.2	chr2	114697535:114697679:114699762:114699936:114709055:114709148,	114699763	114699936	114699799	114699799	Nonsense_Mutation	G	T	p.E241*
UCEC	TCGA-AP-A059-01	RALB	ENST00000449649.1,ENST00000447591.1,ENST00000272519.5,ENST00000412383.1,ENST00000420510.1,ENST00000474855.2	chr2	121036193:121036354:121043449:121043658:121047155:121047168,	121043450	121043658	121043570	121043570	Nonsense_Mutation	C	T	p.R79*
UCEC	TCGA-AX-A0J0-01	TFCP2L1	ENST00000263707.5	chr2	121999934:122000045:122004393:122004546:122005739:122005812,	122004394	122004546	122004483	122004483	Nonsense_Mutation	G	A	p.R190*
UCEC	TCGA-BS-A0UF-01	CLASP1	ENST00000409078.3,ENST00000474065.1,ENST00000263710.4,ENST00000541377.1,ENST00000397587.3,ENST00000455322.2	chr2	122260742:122260810:122273240:122273338:122283420:122283496,	122273241	122273338	122273335	122273335	Nonsense_Mutation	G	A	p.R184*
UCEC	TCGA-BS-A0UV-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128036748:128036951:128038022:128038207:128044278:128044593,	128038023	128038207	128038196	128038196	Nonsense_Mutation	G	A	p.R452*
UCEC	TCGA-AP-A0LM-01	POTEF	ENST00000409914.2,ENST00000357462.5	chr2	130858248:130858293:130859682:130859753:130865581:130865652,	130859683	130859753	130859724	130859724	Nonsense_Mutation	C	A	p.E386*
UCEC	TCGA-B5-A0K9-01	MZT2B	ENST00000457492.1	chr2	130939987:130940025:130940199:130940348:130948041:130948052,130939344:130939403:130940199:130940348:130948041:130948052,	130940200	130940348	130940276	130940276	Nonsense_Mutation	C	T	p.Q83*
UCEC	TCGA-AX-A0J0-01	NCKAP5	ENST00000427594.1,ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133887549:133887683:133971287:133971351:134060608:134060682,	133971288	133971351	133971307	133971307	Nonsense_Mutation	C	A	p.E59*
UCEC	TCGA-B5-A0JY-01	NCKAP5	ENST00000427594.1,ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133887549:133887683:133971287:133971351:134060608:134060682,	133971288	133971351	133971307	133971307	Nonsense_Mutation	C	A	p.E59*
UCEC	TCGA-BS-A0UF-01	CCNT2	ENST00000295238.6,ENST00000452839.1,ENST00000537343.1,ENST00000419781.1,ENST00000417175.1,ENST00000475094.1,ENST00000264157.5	chr2	135677379:135677461:135694410:135694539:135696571:135696632,	135694411	135694539	135694462	135694462	Nonsense_Mutation	C	T	p.R98*
UCEC	TCGA-AP-A0LM-01	CCNT2	ENST00000295238.6,ENST00000452839.1,ENST00000537343.1,ENST00000452521.1,ENST00000446247.1,ENST00000419781.1,ENST00000264157.5	chr2	135705395:135705469:135710210:135710281:135710799:135710838,	135710211	135710281	135710270	135710270	Nonsense_Mutation	C	T	p.R255*
UCEC	TCGA-B5-A11E-01	UBXN4	ENST00000416538.1	chr2	136505836:136505939:136511108:136511847:136513086:136513228,	136511109	136511847	136511773	136511773	Nonsense_Mutation	G	T	p.G87*
UCEC	TCGA-AX-A05Z-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	138163182:138163377:138169178:138169442:138208414:138208593,	138169179	138169442	138169355	138169355	Nonsense_Mutation	G	T	p.E927*
UCEC	TCGA-D1-A17Q-01	HNMT	ENST00000280097.3,ENST00000467390.1,ENST00000410115.1	chr2	138722083:138722198:138727734:138727787:138758487:138758595,	138727735	138727787	138727754	138727754	Nonsense_Mutation	G	T	p.E53*
UCEC	TCGA-A5-A0GP-01	SPOPL	ENST00000280098.4	chr2	139308543:139308624:139310123:139310251:139316591:139316769,	139310124	139310251	139310141	139310141	Nonsense_Mutation	C	T	p.R124*
UCEC	TCGA-B5-A0JY-01	LRP1B	ENST00000389484.3	chr2	141777490:141777671:141806554:141806791:141812684:141812828,	141806555	141806791	141806573	141806573	Nonsense_Mutation	C	A	p.E591*
UCEC	TCGA-AP-A051-01	LRP1B	ENST00000389484.3	chr2	141777490:141777671:141806554:141806791:141812684:141812828,	141806555	141806791	141806735	141806735	Nonsense_Mutation	C	A	p.G537*
UCEC	TCGA-BS-A0UF-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145145583:145147595:145153978:145154159:145155867:145157837,	145153979	145154159	145154156	145154156	Nonsense_Mutation	C	A	p.E964*
UCEC	TCGA-AP-A051-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145155993	145155993	Nonsense_Mutation	G	A	p.R921*
UCEC	TCGA-AP-A056-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148674851:148674995:148676015:148676161:148677798:148677913,	148676016	148676161	148676061	148676061	Nonsense_Mutation	G	T	p.E288*
UCEC	TCGA-AX-A05Z-01	ORC4	ENST00000535373.1,ENST00000536575.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000392858.1	chr2	148701004:148701091:148705619:148705793:148712915:148712964,148701004:148701091:148705619:148705793:148709941:148710082,	148705620	148705793	148705723	148705723	Nonsense_Mutation	G	T	p.S220*
UCEC	TCGA-D1-A17Q-01	MBD5	ENST00000404807.1,ENST00000407073.1	chr2	149216198:149216440:149220150:149220253:149221307:149221488,	149220151	149220253	149220182	149220182	Nonsense_Mutation	C	T	p.Q49*
UCEC	TCGA-AX-A05Z-01	KIF5C	ENST00000414838.2,ENST00000435030.1,ENST00000397413.1,ENST00000482151.1	chr2	149866648:149866865:149868083:149868197:149879591:149880024,	149868084	149868197	149868143	149868143	Nonsense_Mutation	C	T	p.R943*
UCEC	TCGA-D1-A103-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320361	152320361	Nonsense_Mutation	C	T	p.R1443*
UCEC	TCGA-AX-A05Z-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321756	152321756	Nonsense_Mutation	G	T	p.E1908*
UCEC	TCGA-AP-A056-01	NEB	ENST00000413693.1,ENST00000509223.2	chr2	152350674:152350767:152352789:152352882:152359306:152359399,152350674:152350767:152352789:152352882:152353454:152353547,152350674:152350767:152352789:152352882:152359862:152359943,	152352790	152352882	152352870	152352870	Nonsense_Mutation	C	A	p.E6280*
UCEC	TCGA-AX-A0J0-01	NEB	ENST00000409198.1,ENST00000172853.10	chr2	152357904:152357997:152359306:152359399:152359862:152359943,152352818:152352882:152359306:152359399:152359862:152359943,	152359307	152359399	152359319	152359319	Nonsense_Mutation	C	A	p.E149*
UCEC	TCGA-AP-A059-01	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000431076.1	chr2	155102324:155102495:155115533:155115651:155157921:155158102,	155115534	155115651	155115621	155115621	Nonsense_Mutation	G	A	p.W315*
UCEC	TCGA-BS-A0UV-01	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000431076.1	chr2	155102324:155102495:155115533:155115651:155157921:155158102,	155115534	155115651	155115637	155115637	Nonsense_Mutation	G	T	p.E321*
UCEC	TCGA-BS-A0UV-01	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000487047.1,ENST00000431076.1	chr2	155158091:155158102:155252502:155252642:155265495:155265555,	155252503	155252642	155252589	155252589	Nonsense_Mutation	G	T	p.E415*
UCEC	TCGA-AX-A05Z-01	GALNT13	ENST00000392825.3	chr2	155265522:155265594:155295103:155295238:155306922:155307206,	155295104	155295238	155295128	155295128	Nonsense_Mutation	G	T	p.E474*
UCEC	TCGA-AP-A0LM-01	GPD2	ENST00000540309.1,ENST00000409674.1,ENST00000438166.2,ENST00000415049.1,ENST00000310454.6,ENST00000409861.1	chr2	157332609:157332719:157352555:157352727:157367307:157367346,	157352556	157352727	157352682	157352682	Nonsense_Mutation	G	T	p.G77*
UCEC	TCGA-AP-A056-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1,ENST00000421462.1,ENST00000426248.3	chr2	159497138:159497271:159498997:159499211:159514642:159514826,	159498998	159499211	159499085	159499085	Nonsense_Mutation	C	T	p.R595*
UCEC	TCGA-BS-A0UV-01	PKP4	ENST00000492496.1,ENST00000389757.3,ENST00000389759.3,ENST00000452162.1,ENST00000421462.1,ENST00000426248.3	chr2	159499031:159499211:159514642:159514826:159517844:159517962,	159514643	159514826	159514693	159514693	Nonsense_Mutation	C	T	p.R654*
UCEC	TCGA-AX-A0J0-01	WDSUB1	ENST00000358147.4	chr2	160104882:160105023:160112706:160112886:160132056:160132149,	160112707	160112886	160112755	160112755	Nonsense_Mutation	C	A	p.E362*
UCEC	TCGA-AX-A05Z-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160189050:160189197:160193452:160193588:160194077:160194283,	160193453	160193588	160193466	160193466	Nonsense_Mutation	G	T	p.S1928*
UCEC	TCGA-BS-A0TC-01	BAZ2B	ENST00000294905.4,ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160253855:160253900:160255339:160255405:160257109:160257161,	160255340	160255405	160255348	160255348	Nonsense_Mutation	G	A	p.R986*
UCEC	TCGA-BS-A0TC-01	MARCH7	ENST00000259050.4,ENST00000539065.1	chr2	160572191:160572277:160585519:160585686:160599571:160599722,160569033:160569172:160585519:160585686:160599571:160599722,160569009:160569117:160585519:160585686:160599571:160599722,	160585520	160585686	160585683	160585683	Nonsense_Mutation	T	G	p.Y50*
UCEC	TCGA-AP-A056-01	ITGB6	ENST00000409872.1,ENST00000409583.1,ENST00000428609.2,ENST00000283249.2	chr2	160964189:160964356:160968590:160968710:160980301:160980399,	160968591	160968710	160968663	160968663	Nonsense_Mutation	C	A	p.E677*
UCEC	TCGA-BS-A0UV-01	PSMD14	ENST00000477232.1,ENST00000409682.3	chr2	162247614:162247689:162251588:162251714:162265347:162265410,	162251589	162251714	162251667	162251667	Nonsense_Mutation	G	T	p.E242*
UCEC	TCGA-AP-A0LM-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551735	165551735	Nonsense_Mutation	G	A	p.R761*
UCEC	TCGA-AP-A0LM-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551735	165551735	Nonsense_Mutation	G	A	p.R761*
UCEC	TCGA-AX-A0J0-01	COBLL1	ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165555914:165556009:165557031:165557266:165560953:165561028,	165557032	165557266	165557219	165557219	Nonsense_Mutation	C	A	p.E464*
UCEC	TCGA-AX-A05Z-01	SCN2A	ENST00000375427.2,ENST00000357398.3	chr2	166165175:166165304:166165674:166165766:166166832:166167105,	166165675	166165766	166165685	166165685	Nonsense_Mutation	G	T	p.E206*
UCEC	TCGA-AX-A05Z-01	SCN2A	ENST00000375427.2,ENST00000283256.6,ENST00000375437.2,ENST00000480032.1,ENST00000357398.3	chr2	166187839:166188078:166198805:166198979:166201064:166201421,	166198806	166198979	166198865	166198865	Nonsense_Mutation	T	G	p.Y816*
UCEC	TCGA-AX-A0J0-01	SCN2A	ENST00000375427.2,ENST00000283256.6,ENST00000375437.2,ENST00000480032.1,ENST00000357398.3	chr2	166187839:166188078:166198805:166198979:166201064:166201421,	166198806	166198979	166198878	166198878	Nonsense_Mutation	G	T	p.E821*
UCEC	TCGA-AP-A056-01	SCN9A	ENST00000409435.1,ENST00000303354.6,ENST00000409672.1,ENST00000472119.1	chr2	167159599:167159812:167160747:167160839:167162301:167162430,	167160748	167160839	167160829	167160829	Nonsense_Mutation	C	A	p.E203*
UCEC	TCGA-AX-A05Z-01	SCN9A	ENST00000409435.1,ENST00000303354.6,ENST00000409672.1,ENST00000472119.1	chr2	167159599:167159812:167160747:167160839:167162301:167162430,	167160748	167160839	167160829	167160829	Nonsense_Mutation	C	A	p.E203*
UCEC	TCGA-B5-A11E-01	SCN9A	ENST00000409435.1,ENST00000303354.6,ENST00000409672.1,ENST00000472119.1	chr2	167159599:167159812:167160747:167160839:167162301:167162430,	167160748	167160839	167160829	167160829	Nonsense_Mutation	C	A	p.E203*
UCEC	TCGA-BS-A0UF-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099253	168099253	Nonsense_Mutation	G	T	p.E451*
UCEC	TCGA-AP-A051-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102483	168102483	Nonsense_Mutation	G	A	p.W1527*
UCEC	TCGA-AX-A0J0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102643	168102643	Nonsense_Mutation	C	T	p.R1581*
UCEC	TCGA-B5-A11E-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104752	168104752	Nonsense_Mutation	G	T	p.E2284*
UCEC	TCGA-A5-A0GP-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106318	168106318	Nonsense_Mutation	G	T	p.E2806*
UCEC	TCGA-AP-A056-01	STK39	ENST00000355999.4	chr2	168986050:168986116:168986219:168986268:168994597:168994731,	168986220	168986268	168986255	168986255	Nonsense_Mutation	C	A	p.E330*
UCEC	TCGA-D1-A103-01	SPC25	ENST00000282074.2,ENST00000451987.1	chr2	169733747:169733894:169745735:169745801:169745896:169746043,	169745736	169745801	169745736	169745736	Nonsense_Mutation	G	A	p.Q67*
UCEC	TCGA-AP-A056-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170401230:170401345:170402727:170403214:170411633:170411765,	170402728	170403214	170402874	170402874	Nonsense_Mutation	C	A	p.E519*
UCEC	TCGA-AP-A051-01	PPIG	ENST00000466142.1,ENST00000260970.3,ENST00000433207.1,ENST00000409714.3,ENST00000482772.1,ENST00000448752.2	chr2	170488284:170488443:170489669:170489757:170492601:170492738,	170489670	170489757	170489707	170489707	Nonsense_Mutation	C	T	p.R323*
UCEC	TCGA-AP-A0LM-01	PPIG	ENST00000466142.1,ENST00000260970.3,ENST00000433207.1,ENST00000409714.3,ENST00000482772.1,ENST00000448752.2	chr2	170488284:170488443:170489669:170489757:170492601:170492738,	170489670	170489757	170489743	170489743	Nonsense_Mutation	G	T	p.G335*
UCEC	TCGA-B5-A0JY-01	MYO3B	ENST00000442690.1,ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171055761:171055901:171056659:171056794:171070888:171070993,	171056660	171056794	171056672	171056672	Nonsense_Mutation	G	T	p.E67*
UCEC	TCGA-AP-A051-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000478683.1,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171906323:171906460:171906573:171906684:171910270:171910363,	171906574	171906684	171906621	171906621	Nonsense_Mutation	G	A	p.R266*
UCEC	TCGA-B5-A0JY-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000413010.1,ENST00000409443.2,ENST00000360843.3,ENST00000431350.2	chr2	171917590:171917666:171939290:171939362:171974248:171974367,	171939291	171939362	171939299	171939299	Nonsense_Mutation	C	A	p.E108*
UCEC	TCGA-BS-A0UV-01	DCAF17	ENST00000339506.3,ENST00000468592.1,ENST00000375255.3	chr2	172325486:172325540:172330375:172330485:172333369:172333460,	172330376	172330485	172330394	172330394	Nonsense_Mutation	G	T	p.E334*
UCEC	TCGA-AP-A051-01	HAT1	ENST00000457761.2,ENST00000477327.1,ENST00000412731.1,ENST00000392584.1,ENST00000494601.1,ENST00000264108.4	chr2	172823363:172823470:172841095:172841247:172844159:172844276,	172841096	172841247	172841194	172841194	Nonsense_Mutation	G	T	p.G308*
UCEC	TCGA-BS-A0TC-01	ITGA6	ENST00000375221.2,ENST00000409532.1,ENST00000442250.1,ENST00000264107.7,ENST00000264106.6,ENST00000458358.1,ENST00000343713.4,ENST00000409080.1	chr2	173352853:173352956:173354212:173354386:173355751:173355850,	173354213	173354386	173354279	173354279	Nonsense_Mutation	G	T	p.E858*
UCEC	TCGA-AX-A05Z-01	ITGA6	ENST00000375221.2,ENST00000409532.1,ENST00000442250.1,ENST00000264107.7,ENST00000264106.6,ENST00000458358.1,ENST00000343713.4,ENST00000409080.1	chr2	173352853:173352956:173354212:173354386:173355751:173355850,	173354213	173354386	173354279	173354279	Nonsense_Mutation	G	T	p.E858*
UCEC	TCGA-BS-A0UV-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174820642	174820642	Nonsense_Mutation	C	A	p.E200*
UCEC	TCGA-BS-A0UV-01	CIR1	ENST00000377973.4	chr2	175216346:175216453:175243650:175243768:175244929:175244978,175222900:175223264:175243650:175243768:175244929:175244978,	175243651	175243768	175243714	175243714	Nonsense_Mutation	G	A	p.R141*
UCEC	TCGA-B5-A0JY-01	SCRN3	ENST00000409673.3	chr2	175260470:175260545:175263093:175263170:175264649:175264826,	175263094	175263170	175263159	175263159	Nonsense_Mutation	G	T	p.E50*
UCEC	TCGA-B5-A0JY-01	SCRN3	ENST00000458563.1	chr2	175260470:175260545:175263002:175263170:175264649:175264826,175260519:175260717:175263002:175263170:175264649:175264831,175262063:175262132:175263002:175263170:175264649:175264831,	175263003	175263170	175263159	175263159	Nonsense_Mutation	G	T	p.E50*
UCEC	TCGA-D1-A16X-01	SCRN3	ENST00000437944.1,ENST00000272732.6,ENST00000409673.3,ENST00000548868.1,ENST00000490927.1	chr2	175275071:175275231:175287612:175287775:175289202:175289298,175268830:175269043:175287612:175287775:175289202:175289298,	175287613	175287775	175287648	175287648	Nonsense_Mutation	C	T	p.R264*
UCEC	TCGA-B5-A11E-01	GPR155	ENST00000295500.4,ENST00000392552.2,ENST00000392551.2	chr2	175333639:175333795:175335117:175335283:175337692:175338092,	175335118	175335283	175335123	175335123	Nonsense_Mutation	C	A	p.E341*
UCEC	TCGA-B5-A0JY-01	OSBPL6	ENST00000359685.3,ENST00000409045.3,ENST00000392505.2,ENST00000409631.1,ENST00000190611.4,ENST00000315022.2	chr2	179257138:179257265:179259039:179259162:179260177:179260348,	179259040	179259162	179259128	179259128	Nonsense_Mutation	G	T	p.E892*
UCEC	TCGA-A5-A0GQ-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000342992.6,ENST00000460472.2	chr2	179393000:179393154:179393254:179393946:179394686:179394843,	179393255	179393946	179393347	179393347	Nonsense_Mutation	G	A	p.Q33141*
UCEC	TCGA-B5-A0JY-01	TTN	ENST00000589042.1,ENST00000591111.1,ENST00000360870.5,ENST00000342992.6	chr2	179654704:179654842:179655434:179655572:179656798:179656924,	179655435	179655572	179655482	179655482	Nonsense_Mutation	C	A	p.E585*
UCEC	TCGA-AP-A054-01	UBE2E3	ENST00000602888.1,ENST00000602959.1,ENST00000410062.4,ENST00000602710.1,ENST00000602837.1,ENST00000392415.2,ENST00000602291.1	chr2	181922419:181922552:181925391:181925539:181927517:181927576,	181925392	181925539	181925492	181925492	Nonsense_Mutation	C	A	p.S160*
UCEC	TCGA-B5-A11E-01	CERKL	ENST00000339098.5,ENST00000409440.3	chr2	182423378:182423435:182430159:182430237:182430784:182430848,	182430160	182430237	182430197	182430197	Nonsense_Mutation	G	A	p.Q240*
UCEC	TCGA-AP-A056-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186669721	186669721	Nonsense_Mutation	G	T	p.E5230*
UCEC	TCGA-AP-A059-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671119	186671119	Nonsense_Mutation	G	T	p.E5696*
UCEC	TCGA-AP-A056-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671860	186671860	Nonsense_Mutation	G	T	p.E5943*
UCEC	TCGA-BS-A0UV-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672403	186672403	Nonsense_Mutation	G	T	p.E6124*
UCEC	TCGA-AX-A05Z-01	COL3A1	ENST00000304636.3,ENST00000317840.5,ENST00000450867.1	chr2	189856399:189856448:189856909:189856954:189857612:189857666,	189856910	189856954	189856934	189856934	Nonsense_Mutation	C	T	p.R326*
UCEC	TCGA-BS-A0UV-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190531090	190531090	Nonsense_Mutation	G	T	p.E78*
UCEC	TCGA-AX-A0J0-01	OSGEPL1	ENST00000520350.1	chr2	190619898:190620286:190626145:190626251:190626372:190626386,	190626146	190626251	190626240	190626240	Nonsense_Mutation	C	A	p.E43*
UCEC	TCGA-AX-A0J0-01	OSGEPL1	ENST00000519810.1,ENST00000518114.1,ENST00000522700.1	chr2	190619898:190620286:190626145:190626386:190627410:190627493,	190626146	190626386	190626240	190626240	Nonsense_Mutation	C	A	p.E43*
UCEC	TCGA-B5-A11U-01	HIBCH	ENST00000392332.3,ENST00000409934.1,ENST00000359678.5	chr2	191152311:191152364:191155130:191155211:191159271:191159356,	191155131	191155211	191155190	191155190	Nonsense_Mutation	G	A	p.Q8*
UCEC	TCGA-AP-A051-01	GLS	ENST00000320717.3,ENST00000338435.4	chr2	191789268:191789319:191792031:191792208:191795162:191795294,	191792032	191792208	191792194	191792194	Nonsense_Mutation	C	T	p.Q471*
UCEC	TCGA-AP-A0LM-01	DNAH7	ENST00000312428.6	chr2	196651733:196651895:196659061:196659262:196661299:196661461,	196659062	196659262	196659121	196659121	Nonsense_Mutation	G	A	p.R3553*
UCEC	TCGA-AX-A0J0-01	DNAH7	ENST00000312428.6	chr2	196651733:196651895:196659061:196659262:196661299:196661461,	196659062	196659262	196659121	196659121	Nonsense_Mutation	G	A	p.R3553*
UCEC	TCGA-BS-A0UF-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749416	196749416	Nonsense_Mutation	G	A	p.R1886*
UCEC	TCGA-AX-A05Z-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749416	196749416	Nonsense_Mutation	G	A	p.R1886*
UCEC	TCGA-AP-A056-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749422	196749422	Nonsense_Mutation	G	A	p.R1884*
UCEC	TCGA-BS-A0UF-01	DNAH7	ENST00000410072.1,ENST00000312428.6	chr2	196866398:196866582:196877510:196877630:196883893:196884019,	196877511	196877630	196877605	196877605	Nonsense_Mutation	C	A	p.E299*
UCEC	TCGA-AX-A05Z-01	SF3B1	ENST00000414174.1	chr2	198285752:198285857:198288617:198288698:198299695:198299740,	198288618	198288698	198288678	198288678	Nonsense_Mutation	C	A	p.E17*
UCEC	TCGA-AX-A05Z-01	SF3B1	ENST00000414963.2,ENST00000487698.1,ENST00000409915.4	chr2	198285752:198285857:198288531:198288698:198299695:198299740,	198288532	198288698	198288678	198288678	Nonsense_Mutation	C	A	p.E17*
UCEC	TCGA-B5-A11N-01	HSPD1	ENST00000486181.1,ENST00000388968.3,ENST00000452200.1,ENST00000345042.2	chr2	198358917:198358974:198359380:198359476:198360017:198360100,	198359381	198359476	198359446	198359446	Nonsense_Mutation	C	A	p.E181*
UCEC	TCGA-B5-A11N-01	HSPD1	ENST00000430176.1	chr2	198358871:198358974:198359386:198359476:198360017:198360100,	198359387	198359476	198359446	198359446	Nonsense_Mutation	C	A	p.E181*
UCEC	TCGA-B5-A0JY-01	PLCL1	ENST00000487695.2,ENST00000435320.1,ENST00000437704.2,ENST00000428675.1	chr2	198966008:198966084:198968550:198968660:199011503:199011658,	198968551	198968660	198968592	198968592	Nonsense_Mutation	G	T	p.E915*
UCEC	TCGA-BS-A0UF-01	SPATS2L	ENST00000453663.1,ENST00000409140.3,ENST00000449647.1,ENST00000439395.1,ENST00000423749.1,ENST00000358677.5,ENST00000438761.1,ENST00000409385.1,ENST00000409397.2,ENST00000457757.1,ENST00000421573.1,ENST00000409988.3,ENST00000360760.5,ENST00000451764.2,ENST00000409718.1,ENST00000409755.3,ENST00000409151.1,ENST00000439084.1	chr2	201277033:201277142:201281101:201281151:201283972:201284056,	201281102	201281151	201281125	201281125	Nonsense_Mutation	G	T	p.E58*
UCEC	TCGA-AX-A0J0-01	SPATS2L	ENST00000460095.1	chr2	201334636:201334739:201337554:201337715:201342358:201342605,	201337555	201337715	201337659	201337659	Nonsense_Mutation	C	T	p.R389*
UCEC	TCGA-AX-A0J0-01	SPATS2L	ENST00000409140.3,ENST00000358677.5,ENST00000409385.1,ENST00000462190.1,ENST00000409988.3,ENST00000360760.5,ENST00000451764.2,ENST00000409718.1,ENST00000409755.3,ENST00000409151.1	chr2	201334636:201334739:201337554:201337775:201342358:201342605,	201337555	201337775	201337659	201337659	Nonsense_Mutation	C	T	p.R389*
UCEC	TCGA-BS-A0UF-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000409769.2,ENST00000473565.1,ENST00000409403.2	chr2	201721613:201721708:201722440:201722607:201722695:201722812,	201722441	201722607	201722492	201722492	Nonsense_Mutation	G	A	p.R261*
UCEC	TCGA-BS-A0UF-01	CLK1	ENST00000461981.1	chr2	201721404:201721534:201721613:201722607:201722695:201722812,	201721614	201722607	201722492	201722492	Nonsense_Mutation	G	A	p.R261*
UCEC	TCGA-B5-A0JY-01	ORC2	ENST00000234296.2	chr2	201796061:201796171:201798598:201798697:201800421:201800615,	201798599	201798697	201798685	201798685	Nonsense_Mutation	C	A	p.E241*
UCEC	TCGA-D1-A17Q-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050564	202050564	Nonsense_Mutation	G	T	p.E22*
UCEC	TCGA-B5-A11Y-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050825	202050825	Nonsense_Mutation	C	T	p.R109*
UCEC	TCGA-B5-A11E-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131315	202131315	Nonsense_Mutation	G	T	p.E95*
UCEC	TCGA-B5-A11E-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131315	202131315	Nonsense_Mutation	G	T	p.E95*
UCEC	TCGA-B5-A0JY-01	STRADB	ENST00000194530.3,ENST00000392249.2	chr2	202319468:202319575:202323506:202323587:202337677:202337799,202319468:202319575:202323506:202323587:202334675:202334775,	202323507	202323587	202323584	202323584	Nonsense_Mutation	C	A	p.Y30*
UCEC	TCGA-AX-A0J0-01	SUMO1	ENST00000409627.2,ENST00000392246.2,ENST00000409498.2,ENST00000469034.1,ENST00000392245.1,ENST00000392244.3,ENST00000409205.1	chr2	203071975:203072044:203075457:203075529:203079079:203079152,	203075458	203075529	203075460	203075460	Nonsense_Mutation	C	A	p.E79*
UCEC	TCGA-AX-A0J0-01	SUMO1	ENST00000409181.1	chr2	203071975:203072044:203075457:203075506:203079079:203079157,	203075458	203075506	203075460	203075460	Nonsense_Mutation	C	A	p.E79*
UCEC	TCGA-BS-A0UF-01	NOP58	ENST00000433543.2	chr2	203155847:203155993:203157499:203157626:203160396:203160560,203155847:203155993:203157499:203157626:203162101:203162236,	203157500	203157626	203157506	203157506	Nonsense_Mutation	G	T	p.E263*
UCEC	TCGA-D1-A17Q-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420177	203420177	Nonsense_Mutation	C	T	p.R597*
UCEC	TCGA-AP-A051-01	CYP20A1	ENST00000428265.1,ENST00000449301.1,ENST00000463131.1	chr2	204131236:204131404:204143295:204143411:204144781:204144836,	204143296	204143411	204143340	204143340	Nonsense_Mutation	C	T	p.R242*
UCEC	TCGA-AP-A056-01	ABI2	ENST00000261016.6,ENST00000441061.1	chr2	204193206:204193354:204231599:204231767:204244930:204244996,204193206:204193354:204231599:204231767:204240779:204240855,	204231600	204231767	204231627	204231627	Nonsense_Mutation	G	T	p.E49*
UCEC	TCGA-AP-A056-01	ABI2	ENST00000416001.1	chr2	204193206:204193354:204231599:204231719:204267298:204267457,	204231600	204231719	204231627	204231627	Nonsense_Mutation	G	T	p.E49*
UCEC	TCGA-D1-A17Q-01	ABI2	ENST00000261016.6,ENST00000441061.1	chr2	204193206:204193354:204231599:204231767:204244930:204244996,204193206:204193354:204231599:204231767:204240779:204240855,	204231600	204231767	204231627	204231627	Nonsense_Mutation	G	T	p.E49*
UCEC	TCGA-D1-A17Q-01	ABI2	ENST00000416001.1	chr2	204193206:204193354:204231599:204231719:204267298:204267457,	204231600	204231719	204231627	204231627	Nonsense_Mutation	G	T	p.E49*
UCEC	TCGA-AX-A0J0-01	ABI2	ENST00000261017.5,ENST00000430418.1,ENST00000424558.1	chr2	204231606:204231767:204244930:204245107:204255768:204255866,	204244931	204245107	204244967	204244967	Nonsense_Mutation	G	T	p.E108*
UCEC	TCGA-B5-A11E-01	RAPH1	ENST00000423104.1,ENST00000457812.1,ENST00000374493.3,ENST00000453034.1,ENST00000308091.4,ENST00000319170.5,ENST00000374489.2,ENST00000418114.1,ENST00000374488.2,ENST00000439222.1,ENST00000419464.1	chr2	204320159:204320303:204322252:204322318:204324629:204324751,	204322253	204322318	204322267	204322267	Nonsense_Mutation	C	A	p.E382*
UCEC	TCGA-BS-A0UF-01	NRP2	ENST00000467850.1,ENST00000357785.5	chr2	206631506:206631527:206656958:206657009:206659477:206659782,	206656959	206657009	206657000	206657000	Nonsense_Mutation	G	T	p.E828*
UCEC	TCGA-AP-A0LM-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	206991262:206991335:206991433:206991568:206992520:206992696,	206991434	206991568	206991490	206991490	Nonsense_Mutation	G	A	p.R655*
UCEC	TCGA-B5-A11E-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	207003208:207003338:207006664:207006793:207007409:207007549,	207006665	207006793	207006672	207006672	Nonsense_Mutation	G	A	p.R419*
UCEC	TCGA-B5-A11Y-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	207006664:207006793:207007409:207007555:207008741:207008856,	207007410	207007555	207007417	207007417	Nonsense_Mutation	C	A	p.G376*
UCEC	TCGA-BS-A0UF-01	NDUFS1	ENST00000449699.1,ENST00000456284.1,ENST00000454195.1,ENST00000455934.2,ENST00000233190.6	chr2	207014541:207014649:207017142:207017234:207018341:207018406,	207017143	207017234	207017232	207017232	Nonsense_Mutation	G	A	p.R22*
UCEC	TCGA-AX-A0J0-01	FASTKD2	ENST00000236980.6,ENST00000402774.3,ENST00000403094.3,ENST00000487777.1	chr2	207636904:207637044:207638948:207639121:207651456:207651623,	207638949	207639121	207639120	207639120	Nonsense_Mutation	G	T	p.E476*
UCEC	TCGA-BS-A0UV-01	KLF7	ENST00000412414.2,ENST00000309446.6,ENST00000421199.1	chr2	207945739:207945988:207953181:207953305:207988497:207989128,	207953182	207953305	207953246	207953246	Nonsense_Mutation	C	A	p.E265*
UCEC	TCGA-AX-A0J0-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905*
UCEC	TCGA-AX-A0J0-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559607	210559607	Nonsense_Mutation	C	T	p.R905*
UCEC	TCGA-AX-A0J0-01	UNC80	ENST00000439458.1,ENST00000489023.1,ENST00000272845.6	chr2	210791566:210791710:210794594:210794695:210795691:210795778,	210794595	210794695	210794657	210794657	Nonsense_Mutation	C	T	p.R1891*
UCEC	TCGA-B5-A11Y-01	UNC80	ENST00000539183.1,ENST00000439458.1,ENST00000333907.3,ENST00000272845.6,ENST00000477924.1	chr2	210834491:210834615:210835555:210835681:210836924:210837048,	210835556	210835681	210835673	210835673	Nonsense_Mutation	C	T	p.Q2684*
UCEC	TCGA-AX-A05Z-01	KANSL1L	ENST00000418791.1	chr2	210893568:210893693:210894526:210894642:210896144:210896270,210893568:210893693:210894526:210894642:210905143:210905251,	210894527	210894642	210894549	210894549	Nonsense_Mutation	G	T	p.S750*
UCEC	TCGA-AX-A05Z-01	KANSL1L	ENST00000281772.9	chr2	210896144:210896270:210905143:210905251:210908662:210908828,	210905144	210905251	210905228	210905228	Nonsense_Mutation	C	A	p.E649*
UCEC	TCGA-B5-A11N-01	SPAG16	ENST00000272898.7,ENST00000374309.3,ENST00000440779.1,ENST00000331683.5,ENST00000413312.1,ENST00000447990.1,ENST00000406979.2	chr2	214181942:214182080:214204886:214204994:214228799:214228869,214181942:214182080:214204886:214204994:214215251:214215369,	214204887	214204994	214204921	214204921	Nonsense_Mutation	G	T	p.E191*
UCEC	TCGA-AP-A059-01	SPAG16	ENST00000374309.3,ENST00000331683.5,ENST00000452556.1,ENST00000406979.2	chr2	214727208:214727352:214794683:214794869:214878674:214878801,	214794684	214794869	214794788	214794788	Nonsense_Mutation	G	A	p.W440*
UCEC	TCGA-AP-A051-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646108	215646108	Nonsense_Mutation	G	A	p.Q164*
UCEC	TCGA-AX-A05Z-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646173	215646173	Nonsense_Mutation	G	T	p.S142*
UCEC	TCGA-D1-A17Q-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216295437:216295575:216296555:216296687:216298046:216298184,	216296556	216296687	216296577	216296577	Nonsense_Mutation	C	A	p.E176*
UCEC	TCGA-D1-A15X-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285159	217285159	Nonsense_Mutation	C	T	p.R334*
UCEC	TCGA-BS-A0UF-01	TMBIM1	ENST00000492966.1,ENST00000437694.2,ENST00000445635.1,ENST00000465082.1,ENST00000258412.3,ENST00000396809.2,ENST00000429501.1,ENST00000444881.1,ENST00000425694.1	chr2	219142657:219142697:219143237:219143288:219143760:219143814,	219143238	219143288	219143252	219143252	Nonsense_Mutation	G	T	p.C153*
UCEC	TCGA-B5-A0JY-01	STK36	ENST00000486644.1,ENST00000392105.3	chr2	219558986:219559050:219559247:219559358:219561249:219561324,219558986:219559050:219559247:219559358:219561312:219561324,	219559248	219559358	219559356	219559356	Nonsense_Mutation	G	T	p.E837*
UCEC	TCGA-D1-A103-01	TTLL4	ENST00000442769.1,ENST00000436668.1,ENST00000258398.4,ENST00000465558.1,ENST00000457313.1,ENST00000392102.1	chr2	219614731:219614869:219616426:219616529:219617485:219617570,	219616427	219616529	219616455	219616455	Nonsense_Mutation	C	T	p.R968*
UCEC	TCGA-B5-A0JY-01	WNT10A	ENST00000258411.3	chr2	219746965:219747145:219754705:219755085:219757495:219757868,	219754706	219755085	219754711	219754711	Nonsense_Mutation	C	T	p.R128*
UCEC	TCGA-B5-A0JY-01	ANKZF1	ENST00000410034.3,ENST00000486203.1,ENST00000323348.5,ENST00000447157.1,ENST00000436226.1	chr2	220094957:220095072:220096649:220096762:220096981:220096992,220094949:220095127:220096649:220096762:220096981:220096992,	220096650	220096762	220096677	220096677	Nonsense_Mutation	G	T	p.E41*
UCEC	TCGA-AP-A051-01	OBSL1	ENST00000265318.4,ENST00000465149.1,ENST00000603926.1,ENST00000404537.1	chr2	220421299:220421445:220422064:220422340:220422544:220422805,	220422065	220422340	220422065	220422065	Nonsense_Mutation	C	A	p.E1356*
UCEC	TCGA-AX-A0J0-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222347159:222347410:222365736:222365892:222428450:222429114,	222365737	222365892	222365881	222365881	Nonsense_Mutation	C	A	p.G279*
UCEC	TCGA-AP-A0LM-01	WDFY1	ENST00000233055.4	chr2	224749385:224749466:224758950:224759056:224760220:224760347,	224758951	224759056	224758956	224758956	Nonsense_Mutation	C	A	p.E276*
UCEC	TCGA-AX-A05Z-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225367708:225367789:225368368:225368539:225370672:225370849,	225368369	225368539	225368527	225368527	Nonsense_Mutation	C	A	p.E407*
UCEC	TCGA-AX-A0J0-01	DOCK10	ENST00000422684.1,ENST00000409592.3,ENST00000258390.7	chr2	225664878:225664980:225666632:225666757:225668828:225668930,	225666633	225666757	225666693	225666693	Nonsense_Mutation	G	A	p.R1445*
UCEC	TCGA-AX-A05Z-01	MFF	ENST00000409616.1,ENST00000349901.7	chr2	228197134:228197304:228205007:228205096:228211941:228211990,228197134:228197304:228205007:228205096:228220392:228220477,228197134:228197304:228205007:228205096:228217229:228217289,	228205008	228205096	228205011	228205011	Nonsense_Mutation	C	T	p.R145*
UCEC	TCGA-AP-A059-01	MFF	ENST00000409616.1,ENST00000349901.7	chr2	228197134:228197304:228205007:228205096:228211941:228211990,228197134:228197304:228205007:228205096:228220392:228220477,228197134:228197304:228205007:228205096:228217229:228217289,	228205008	228205096	228205057	228205057	Nonsense_Mutation	C	A	p.C122*
UCEC	TCGA-A5-A0GP-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230653513:230653656:230654326:230654478:230655839:230655967,	230654327	230654478	230654350	230654350	Nonsense_Mutation	G	A	p.R1483*
UCEC	TCGA-AP-A0LM-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231102927:231103096:231106118:231106202:231108445:231108526,	231106119	231106202	231106123	231106123	Nonsense_Mutation	C	A	p.C137*
UCEC	TCGA-AX-A05Z-01	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1	chr2	231311533:231311617:231313802:231313865:231314028:231314095,231311533:231311617:231313802:231313865:231314275:231314425,	231313803	231313865	231313823	231313823	Nonsense_Mutation	C	T	p.R182*
UCEC	TCGA-B5-A0JY-01	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1,ENST00000452345.1	chr2	231327181:231327233:231328781:231328865:231331015:231331069,	231328782	231328865	231328805	231328805	Nonsense_Mutation	G	T	p.E361*
UCEC	TCGA-A5-A0VP-01	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000409112.1,ENST00000452345.1,ENST00000413284.1	chr2	231331834:231331930:231333757:231333811:231334729:231334813,	231333758	231333811	231333811	231333811	Nonsense_Mutation	C	T	p.Q449*
UCEC	TCGA-B5-A0JY-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000470087.1,ENST00000445090.1,ENST00000409401.3,ENST00000390005.5,ENST00000273009.6	chr2	232894688:232894790:232952196:232952431:232995328:232995429,	232952197	232952431	232952224	232952224	Nonsense_Mutation	G	T	p.E132*
UCEC	TCGA-AX-A0J0-01	KCNJ13	ENST00000409779.1	chr2	233633190:233633523:233635848:233636088:233641154:233641265,	233635849	233636088	233635949	233635949	Nonsense_Mutation	G	A	p.R42*
UCEC	TCGA-BS-A0UF-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233710441:233710596:233712057:233712281:233714971:233715119,	233712058	233712281	233712090	233712090	Nonsense_Mutation	G	T	p.E1186*
UCEC	TCGA-B5-A11E-01	DGKD	ENST00000447484.1,ENST00000264057.2,ENST00000409813.3	chr2	234299048:234299129:234343025:234343130:234343414:234343545,	234343026	234343130	234343074	234343074	Nonsense_Mutation	G	T	p.E133*
UCEC	TCGA-BS-A0UF-01	IQCA1	ENST00000431676.2,ENST00000309507.5,ENST00000409907.3,ENST00000418802.1,ENST00000254653.5	chr2	237395476:237395543:237396642:237396834:237402410:237402530,	237396643	237396834	237396720	237396720	Nonsense_Mutation	C	A	p.E191*
UCEC	TCGA-BS-A0UV-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277290	238277290	Nonsense_Mutation	C	A	p.E1606*
UCEC	TCGA-AP-A056-01	COL6A3	ENST00000347401.3	chr2	238296224:238296827:238303229:238303847:238305369:238305405,238289779:238290142:238303229:238303847:238305369:238305460,	238303230	238303847	238303380	238303380	Nonsense_Mutation	C	A	p.E187*
UCEC	TCGA-AP-A051-01	COL6A3	ENST00000347401.3	chr2	238296224:238296827:238303229:238303847:238305369:238305405,238289779:238290142:238303229:238303847:238305369:238305460,	238303230	238303847	238303578	238303578	Nonsense_Mutation	C	A	p.G121*
UCEC	TCGA-BS-A0TC-01	LRRFIP1	ENST00000308482.9,ENST00000392000.4	chr2	238657911:238657967:238659842:238659914:238661951:238662122,	238659843	238659914	238659843	238659843	Nonsense_Mutation	G	T	p.E138*
UCEC	TCGA-B5-A11N-01	LRRFIP1	ENST00000308482.9	chr2	238666098:238666191:238667371:238667464:238668706:238668848,	238667372	238667464	238667390	238667390	Nonsense_Mutation	G	T	p.E415*
UCEC	TCGA-AP-A0LM-01	ANKMY1	ENST00000391988.2	chr2	241446976:241447108:241448764:241448872:241451277:241451418,241446976:241447108:241448764:241448872:241452218:241452359,	241448765	241448872	241448781	241448781	Nonsense_Mutation	G	T	p.C133*
UCEC	TCGA-D1-A103-01	HDLBP	ENST00000427487.1	chr2	242179225:242179235:242179315:242179579:242181874:242181955,	242179316	242179579	242179346	242179346	Nonsense_Mutation	C	A	p.E596*
UCEC	TCGA-D1-A103-01	HDLBP	ENST00000373292.4,ENST00000479169.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000459788.1,ENST00000310931.4	chr2	242179225:242179235:242179315:242179537:242181874:242181955,	242179316	242179537	242179346	242179346	Nonsense_Mutation	C	A	p.E596*
UCEC	TCGA-B5-A11E-01	HDLBP	ENST00000453141.1	chr2	242194556:242194573:242194788:242194926:242195598:242195814,	242194789	242194926	242194839	242194839	Nonsense_Mutation	G	A	p.R344*
UCEC	TCGA-B5-A11E-01	HDLBP	ENST00000391975.1,ENST00000391976.2,ENST00000310931.4	chr2	242194556:242194573:242194788:242194995:242195598:242195814,	242194789	242194995	242194839	242194839	Nonsense_Mutation	G	A	p.R344*
UCEC	TCGA-BS-A0UV-01	FARP2	ENST00000264042.3,ENST00000470617.1	chr2	242432343:242432451:242432707:242432859:242433422:242433534,	242432708	242432859	242432824	242432824	Nonsense_Mutation	C	A	p.Y1004*
UCEC	TCGA-D1-A17Q-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1424976:1425092:1427294:1427481:1443116:1443229,	1427295	1427481	1427322	1427322	Nonsense_Mutation	G	T	p.E849*
UCEC	TCGA-D1-A16Y-01	CNTN4	ENST00000422330.1,ENST00000418658.1,ENST00000455083.1,ENST00000397461.1,ENST00000427741.1	chr3	2380861:2380917:2613099:2613242:2777898:2778007,	2613100	2613242	2613202	2613202	Nonsense_Mutation	G	A	p.W5*
UCEC	TCGA-AP-A059-01	TTLL3	ENST00000427220.1	chr3	9859328:9859443:9860238:9860604:9862229:9862425,	9860239	9860604	9860507	9860507	Nonsense_Mutation	G	T	p.G100*
UCEC	TCGA-AP-A059-01	TTLL3	ENST00000443148.1,ENST00000310252.7,ENST00000547186.1,ENST00000427853.3,ENST00000426895.4,ENST00000397241.1	chr3	9859328:9859443:9860505:9860604:9862229:9862425,	9860506	9860604	9860507	9860507	Nonsense_Mutation	G	T	p.G100*
UCEC	TCGA-EY-A1GS-01	IL17RC	ENST00000494365.1	chr3	9971535:9971581:9971711:9971833:9972083:9972128,9971535:9971581:9971711:9971833:9972578:9972627,	9971712	9971833	9971765	9971765	Nonsense_Mutation	C	T	p.Q475*
UCEC	TCGA-AP-A051-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10091145:10091189:10094070:10094181:10101977:10102087,	10094071	10094181	10094113	10094113	Nonsense_Mutation	C	T	p.R530*
UCEC	TCGA-B5-A11Y-01	TAMM41	ENST00000444133.2,ENST00000455809.1	chr3	11849306:11849369:11850990:11851156:11858665:11858811,	11850991	11851156	11850997	11850997	Nonsense_Mutation	G	A	p.R290*
UCEC	TCGA-A5-A0VP-01	TAMM41	ENST00000444133.2,ENST00000455809.1	chr3	11849306:11849369:11850990:11851156:11858665:11858811,	11850991	11851156	11850997	11850997	Nonsense_Mutation	G	A	p.R290*
UCEC	TCGA-BS-A0UF-01	TAMM41	ENST00000444133.2,ENST00000455809.1	chr3	11849306:11849369:11850990:11851156:11858665:11858811,	11850991	11851156	11851045	11851045	Nonsense_Mutation	C	A	p.E274*
UCEC	TCGA-AP-A056-01	TSEN2	ENST00000383797.5	chr3	12558109:12558160:12560557:12560696:12570386:12570423,12546652:12546730:12560557:12560696:12570386:12570423,	12560558	12560696	12560645	12560645	Nonsense_Mutation	C	T	p.R350*
UCEC	TCGA-AP-A059-01	MRPS25	ENST00000444840.2	chr3	15094886:15094974:15100875:15100982:15106567:15106767,15093941:15094140:15100875:15100982:15106567:15106767,	15100876	15100982	15100934	15100934	Nonsense_Mutation	C	T	p.W61*
UCEC	TCGA-BS-A0UF-01	ANKRD28	ENST00000439830.1	chr3	15807740:15807819:15836729:15836813:15900883:15900929,15807740:15807819:15836729:15836813:15855746:15855816,	15836730	15836813	15836768	15836768	Nonsense_Mutation	G	A	p.R25*
UCEC	TCGA-AP-A056-01	ANKRD28	ENST00000439830.1	chr3	15807740:15807819:15836729:15836813:15900883:15900929,15807740:15807819:15836729:15836813:15855746:15855816,	15836730	15836813	15836768	15836768	Nonsense_Mutation	G	A	p.R25*
UCEC	TCGA-AP-A051-01	DPH3	ENST00000285082.4	chr3	16301930:16302336:16305661:16305736:16306101:16306284,	16305662	16305736	16305692	16305692	Nonsense_Mutation	G	T	p.C51*
UCEC	TCGA-B5-A0JY-01	RFTN1	ENST00000453536.1,ENST00000334133.4	chr3	16475357:16475544:16535231:16535384:16554948:16555029,	16535232	16535384	16535268	16535268	Nonsense_Mutation	C	A	p.E37*
UCEC	TCGA-BS-A0UF-01	KCNH8	ENST00000452398.1	chr3	19190025:19190287:19295145:19295379:19322689:19322821,	19295146	19295379	19295355	19295355	Nonsense_Mutation	G	T	p.E96*
UCEC	TCGA-AX-A0J0-01	KAT2B	ENST00000263754.4	chr3	20141353:20141446:20142778:20142960:20153087:20153279,	20142779	20142960	20142827	20142827	Nonsense_Mutation	G	T	p.E240*
UCEC	TCGA-AP-A059-01	RPL15	ENST00000413699.1,ENST00000435882.1,ENST00000434031.2,ENST00000422218.1,ENST00000354811.5,ENST00000307839.5,ENST00000456530.2,ENST00000415719.1	chr3	23959463:23959522:23959930:23960067:23960686:23960737,	23959931	23960067	23959935	23959935	Nonsense_Mutation	C	A	p.Y59*
UCEC	TCGA-B5-A11N-01	NGLY1	ENST00000467224.1	chr3	25760901:25761126:25761620:25761682:25770623:25770807,	25761621	25761682	25761670	25761670	Nonsense_Mutation	G	A	p.R542*
UCEC	TCGA-B5-A11N-01	NGLY1	ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9,ENST00000496726.1	chr3	25760901:25761126:25761504:25761682:25770623:25770807,	25761505	25761682	25761670	25761670	Nonsense_Mutation	G	A	p.R542*
UCEC	TCGA-B5-A0JY-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9	chr3	25770623:25770809:25773809:25773974:25775362:25775469,	25773810	25773974	25773875	25773875	Nonsense_Mutation	C	A	p.E454*
UCEC	TCGA-D1-A17Q-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781078	25781078	Nonsense_Mutation	G	A	p.R291*
UCEC	TCGA-AX-A0J0-01	SLC4A7	ENST00000437266.1,ENST00000440156.1,ENST00000454389.1,ENST00000425128.2,ENST00000428386.1,ENST00000455077.1,ENST00000437179.1,ENST00000295736.5,ENST00000428179.1,ENST00000457377.1,ENST00000438530.1,ENST00000446700.1,ENST00000428005.1,ENST00000388777.4,ENST00000435667.2,ENST00000445684.1	chr3	27475445:27475595:27477878:27478039:27478878:27479017,	27477879	27478039	27477888	27477888	Nonsense_Mutation	C	A	p.E185*
UCEC	TCGA-B5-A11Y-01	SLC4A7	ENST00000437266.1,ENST00000440156.1,ENST00000454389.1,ENST00000425128.2,ENST00000428386.1,ENST00000455077.1,ENST00000437179.1,ENST00000295736.5,ENST00000428179.1,ENST00000457377.1,ENST00000438530.1,ENST00000446700.1,ENST00000428005.1,ENST00000388777.4,ENST00000435667.2,ENST00000445684.1	chr3	27475445:27475595:27477878:27478039:27478878:27479017,	27477879	27478039	27477999	27477999	Nonsense_Mutation	G	A	p.R148*
UCEC	TCGA-AP-A0LM-01	CMC1	ENST00000423894.1	chr3	28304781:28304871:28357823:28357914:28360999:28361232,28283108:28283303:28357823:28357914:28360999:28361232,	28357824	28357914	28357890	28357890	Nonsense_Mutation	C	A	p.C65*
UCEC	TCGA-AP-A051-01	STT3B	ENST00000295770.2	chr3	31661277:31661322:31663588:31663800:31665165:31665353,	31663589	31663800	31663636	31663636	Nonsense_Mutation	C	T	p.R459*
UCEC	TCGA-BS-A0UA-01	OSBPL10	ENST00000438237.2,ENST00000396556.2,ENST00000429492.2	chr3	31710133:31710316:31712288:31712475:31725125:31725606,	31712289	31712475	31712319	31712319	Nonsense_Mutation	G	A	p.R397*
UCEC	TCGA-BS-A0UF-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3	chr3	33879695:33879819:33883388:33883566:33885603:33885715,	33883389	33883566	33883522	33883522	Nonsense_Mutation	G	T	p.E439*
UCEC	TCGA-AX-A05Z-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897168	36897168	Nonsense_Mutation	C	A	p.E755*
UCEC	TCGA-D1-A16X-01	MLH1	ENST00000447829.1	chr3	37053572:37053590:37055922:37056035:37058996:37059090,37053572:37053590:37055922:37056035:37061800:37061954,	37055923	37056035	37055924	37055924	Nonsense_Mutation	G	T	p.E227*
UCEC	TCGA-AX-A05Z-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37107714:37107816:37116514:37116607,37107300:37107433:37107714:37107816:37114280:37114373,	37107715	37107816	37107798	37107798	Nonsense_Mutation	C	A	p.E495*
UCEC	TCGA-B5-A0JY-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37107714:37107816:37116514:37116607,37107300:37107433:37107714:37107816:37114280:37114373,	37107715	37107816	37107798	37107798	Nonsense_Mutation	C	A	p.E495*
UCEC	TCGA-BS-A0UF-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37114280:37114373:37116514:37116607,37107714:37107816:37114280:37114373:37116514:37116607,	37114281	37114373	37114352	37114352	Nonsense_Mutation	T	A	p.K465*
UCEC	TCGA-D1-A17Q-01	OXSR1	ENST00000467900.1,ENST00000311806.3,ENST00000446845.1	chr3	38278329:38278452:38284233:38284269:38287565:38287712,	38284234	38284269	38284249	38284249	Nonsense_Mutation	G	T	p.E364*
UCEC	TCGA-AX-A05Z-01	OXSR1	ENST00000311806.3	chr3	38292893:38292962:38293818:38293883:38294307:38296979,	38293819	38293883	38293863	38293863	Nonsense_Mutation	C	T	p.R497*
UCEC	TCGA-AX-A05Z-01	WDR48	ENST00000418020.1,ENST00000420940.2,ENST00000423296.2	chr3	39093510:39093564:39104540:39104681:39107301:39107380,	39104541	39104681	39104556	39104556	Nonsense_Mutation	C	T	p.R22*
UCEC	TCGA-B5-A0JY-01	ZNF619	ENST00000456778.1,ENST00000520737.1	chr3	40519470:40519494:40524078:40524195:40528296:40529750,	40524079	40524195	40524129	40524129	Nonsense_Mutation	G	T	p.E117*
UCEC	TCGA-AX-A0J1-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3	chr3	42226176:42226293:42229536:42229637:42230507:42230616,	42229537	42229637	42229629	42229629	Nonsense_Mutation	C	A	p.C191*
UCEC	TCGA-B5-A11E-01	HIGD1A	ENST00000452906.2	chr3	42827519:42827654:42835648:42835767:42845927:42845980,42827519:42827654:42835648:42835767:42845663:42845925,	42835649	42835767	42835682	42835682	Nonsense_Mutation	G	A	p.R36*
UCEC	TCGA-B5-A11E-01	HIGD1A	ENST00000418900.2	chr3	42827519:42827654:42835648:42835791:42845927:42845980,	42835649	42835791	42835682	42835682	Nonsense_Mutation	G	A	p.R36*
UCEC	TCGA-AP-A0LM-01	KIF15	ENST00000438321.1,ENST00000326047.4	chr3	44822376:44822414:44826336:44826434:44827886:44828066,	44826337	44826434	44826375	44826375	Nonsense_Mutation	G	T	p.G134*
UCEC	TCGA-AP-A059-01	TGM4	ENST00000296125.4	chr3	44945375:44945479:44948440:44948692:44951581:44951860,	44948441	44948692	44948451	44948451	Nonsense_Mutation	C	A	p.C362*
UCEC	TCGA-AP-A059-01	ALS2CL	ENST00000415953.1,ENST00000318962.4,ENST00000383742.3	chr3	46716055:46716229:46717107:46717176:46717734:46717892,	46717108	46717176	46717115	46717115	Nonsense_Mutation	C	A	p.E750*
UCEC	TCGA-AP-A059-01	ALS2CL	ENST00000434140.1	chr3	46716055:46716229:46717107:46717466:46717734:46717892,	46717108	46717466	46717115	46717115	Nonsense_Mutation	C	A	p.E750*
UCEC	TCGA-B5-A0JY-01	ALS2CL	ENST00000434140.1	chr3	46721919:46722031:46722735:46722897:46722989:46723063,46721919:46722031:46722735:46722897:46722993:46723088,	46722736	46722897	46722783	46722783	Nonsense_Mutation	C	T	p.W463*
UCEC	TCGA-AP-A0LM-01	SETD2	ENST00000445387.1,ENST00000409792.3	chr3	47144835:47144913:47147486:47147610:47155365:47155494,	47147487	47147610	47147496	47147496	Nonsense_Mutation	C	A	p.E1244*
UCEC	TCGA-B5-A0JY-01	PTPN23	ENST00000431726.1	chr3	47422559:47422670:47437632:47437707:47446141:47446269,47422559:47422670:47437632:47437707:47446494:47446571,	47437633	47437707	47437678	47437678	Nonsense_Mutation	G	T	p.E44*
UCEC	TCGA-BS-A0UF-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47663696:47663831:47676679:47676834:47677511:47677626,	47676680	47676834	47676808	47676808	Nonsense_Mutation	C	A	p.E840*
UCEC	TCGA-BS-A0UV-01	SMARCC1	ENST00000483847.1,ENST00000425518.1,ENST00000254480.5	chr3	47716964:47717078:47718118:47718272:47719687:47719801,	47718119	47718272	47718130	47718130	Nonsense_Mutation	G	A	p.R572*
UCEC	TCGA-D1-A103-01	MAP4	ENST00000426837.2,ENST00000360240.6,ENST00000395734.3	chr3	47956306:47956429:47957440:47958664:47960208:47960241,	47957441	47958664	47957822	47957822	Nonsense_Mutation	C	A	p.E499*
UCEC	TCGA-B5-A0JY-01	MAP4	ENST00000439356.1,ENST00000360240.6,ENST00000395734.3	chr3	48019354:48019423:48040127:48040369:48130262:48130314,	48040128	48040369	48040233	48040233	Nonsense_Mutation	C	A	p.E40*
UCEC	TCGA-AP-A0LM-01	NME6	ENST00000450160.1,ENST00000451657.1,ENST00000435684.1	chr3	48336165:48336293:48336564:48336725:48337608:48337648,48336229:48336293:48336564:48336725:48338216:48338319,	48336565	48336725	48336643	48336643	Nonsense_Mutation	G	A	p.R114*
UCEC	TCGA-BS-A0UV-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49050798	49050798	Nonsense_Mutation	C	T	p.R641*
UCEC	TCGA-BS-A0UV-01	WDR6	ENST00000415265.2	chr3	49044835:49044964:49050723:49051549:49051642:49051726,	49050724	49051549	49050798	49050798	Nonsense_Mutation	C	T	p.R641*
UCEC	TCGA-BS-A0UV-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49050798	49050798	Nonsense_Mutation	C	T	p.R641*
UCEC	TCGA-BS-A0UV-01	IMPDH2	ENST00000429182.1,ENST00000326739.4	chr3	49064392:49064480:49065142:49065349:49065680:49065755,	49065143	49065349	49065166	49065166	Nonsense_Mutation	C	A	p.E170*
UCEC	TCGA-BS-A0UV-01	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49159595:49159803:49160136:49160485:49160564:49160806,	49160137	49160485	49160170	49160170	Nonsense_Mutation	C	A	p.E1514*
UCEC	TCGA-AP-A059-01	RNF123	ENST00000487805.2,ENST00000486102.1,ENST00000457726.1,ENST00000433785.1,ENST00000327697.6	chr3	49753825:49753910:49757943:49758086:49758232:49758323,	49757944	49758086	49758004	49758004	Nonsense_Mutation	C	A	p.C1187*
UCEC	TCGA-AP-A059-01	CDHR4	ENST00000487666.1,ENST00000460430.1	chr3	49828164:49828320:49828873:49828904:49829146:49829234,	49828874	49828904	49828881	49828881	Nonsense_Mutation	C	A	p.G131*
UCEC	TCGA-AP-A059-01	CDHR4	ENST00000412678.2	chr3	49828164:49828320:49828873:49828901:49829146:49829234,	49828874	49828901	49828881	49828881	Nonsense_Mutation	C	A	p.G131*
UCEC	TCGA-A5-A0VP-01	RBM6	ENST00000442092.1,ENST00000443081.1,ENST00000422955.1,ENST00000446471.1,ENST00000454079.1,ENST00000464013.1,ENST00000266022.4,ENST00000425608.1,ENST00000483350.1,ENST00000441115.1,ENST00000434592.1	chr3	50085677:50085752:50091767:50091828:50095160:50095239,	50091768	50091828	50091792	50091792	Nonsense_Mutation	C	T	p.R553*
UCEC	TCGA-D1-A15X-01	GNAI2	ENST00000491100.1,ENST00000441156.1,ENST00000490122.1,ENST00000451956.1,ENST00000446079.1,ENST00000266027.5,ENST00000440628.1,ENST00000536647.1,ENST00000422163.1,ENST00000313601.6	chr3	50289828:50289970:50290455:50290616:50293623:50293752,	50290456	50290616	50290564	50290564	Nonsense_Mutation	C	T	p.Q138*
UCEC	TCGA-AX-A0J0-01	RAD54L2	ENST00000409535.2,ENST00000487093.1	chr3	51663406:51663489:51664287:51664404:51664720:51664947,	51664288	51664404	51664398	51664398	Nonsense_Mutation	C	T	p.R198*
UCEC	TCGA-D1-A16X-01	DNAH1	ENST00000486752.1,ENST00000420323.2	chr3	52409255:52409429:52409970:52410009:52412617:52412796,	52409971	52410009	52409985	52409985	Nonsense_Mutation	G	T	p.E2392*
UCEC	TCGA-AX-A05Z-01	PHF7	ENST00000498509.2	chr3	52455031:52455078:52455663:52456897:52457106:52457299,	52455664	52456897	52455724	52455724	Nonsense_Mutation	G	T	p.E212*
UCEC	TCGA-AX-A05Z-01	PHF7	ENST00000347025.2	chr3	52455031:52455078:52455663:52455770:52457106:52457299,52455031:52455078:52455663:52455770:52456775:52456852,	52455664	52455770	52455724	52455724	Nonsense_Mutation	G	T	p.E212*
UCEC	TCGA-AP-A059-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1153*
UCEC	TCGA-BS-A0UJ-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637555	52637555	Nonsense_Mutation	G	A	p.R889*
UCEC	TCGA-D1-A16X-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678795	52678795	Nonsense_Mutation	G	T	p.S275*
UCEC	TCGA-AX-A0J0-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53815592:53815694:53820848:53820979:53834275:53834392,	53820849	53820979	53820926	53820926	Nonsense_Mutation	G	T	p.E1644*
UCEC	TCGA-AX-A05Z-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53815592:53815694:53820848:53820979:53834275:53834392,	53820849	53820979	53820926	53820926	Nonsense_Mutation	G	T	p.E1644*
UCEC	TCGA-AP-A0LM-01	ACTR8	ENST00000335754.3,ENST00000482349.1	chr3	53906410:53906551:53907058:53907154:53908237:53908391,	53907059	53907154	53907118	53907118	Nonsense_Mutation	G	A	p.R368*
UCEC	TCGA-AX-A05Z-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54157539:54157621:54354468:54354585:54420741:54420801,	54354469	54354585	54354505	54354505	Nonsense_Mutation	G	T	p.E81*
UCEC	TCGA-D1-A16X-01	CCDC66	ENST00000436465.2,ENST00000476142.1,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000480884.1,ENST00000341455.6	chr3	56653298:56653555:56653804:56653929:56655559:56655790,	56653805	56653929	56653888	56653888	Nonsense_Mutation	C	T	p.R907*
UCEC	TCGA-AX-A0J0-01	FAM208A	ENST00000355628.5,ENST00000493960.2	chr3	56704100:56704173:56705627:56705720:56707607:56707701,	56705628	56705720	56705702	56705702	Nonsense_Mutation	C	A	p.E166*
UCEC	TCGA-D1-A103-01	ARHGEF3	ENST00000495373.1,ENST00000413728.2,ENST00000338458.4,ENST00000465659.1,ENST00000496106.1,ENST00000296315.3,ENST00000497267.1	chr3	56766265:56766452:56771212:56771383:56779232:56779490,	56771213	56771383	56771257	56771257	Nonsense_Mutation	G	A	p.R365*
UCEC	TCGA-AP-A051-01	HESX1	ENST00000473921.1	chr3	57232008:57232323:57232780:57232980:57233789:57233966,	57232781	57232980	57232813	57232813	Nonsense_Mutation	G	A	p.R109*
UCEC	TCGA-AP-A05A-01	SLMAP	ENST00000428312.1	chr3	57850312:57850443:57857362:57857425:57875767:57875827,57850968:57851019:57857362:57857425:57875767:57875827,57850542:57850584:57857362:57857425:57875767:57875827,	57857363	57857425	57857375	57857375	Nonsense_Mutation	C	G	p.S383*
UCEC	TCGA-AX-A05Z-01	PXK	ENST00000477308.1,ENST00000484288.1	chr3	58318713:58318817:58351600:58351651:58355157:58355205,	58351601	58351651	58351613	58351613	Nonsense_Mutation	C	T	p.R39*
UCEC	TCGA-D1-A16X-01	PXK	ENST00000477308.1,ENST00000383715.4,ENST00000463280.1,ENST00000302779.5,ENST00000356151.2,ENST00000459676.2,ENST00000484288.1,ENST00000479241.1,ENST00000383716.3,ENST00000468776.1,ENST00000536660.1,ENST00000479134.1	chr3	58383331:58383449:58385025:58385104:58389588:58389637,	58385026	58385104	58385103	58385103	Nonsense_Mutation	C	A	p.C148*
UCEC	TCGA-BS-A0UV-01	PTPRG	ENST00000475012.1,ENST00000474889.1,ENST00000295874.10	chr3	62263225:62263354:62267237:62267384:62268401:62268544,	62267238	62267384	62267268	62267268	Nonsense_Mutation	C	T	p.R1266*
UCEC	TCGA-AP-A0LM-01	CADPS	ENST00000283269.9	chr3	62484836:62484943:62499312:62499381:62501733:62501857,	62499313	62499381	62499370	62499370	Nonsense_Mutation	C	A	p.E865*
UCEC	TCGA-B5-A0JY-01	THOC7	ENST00000498422.1	chr3	63824047:63824175:63825331:63825449:63849179:63849462,	63825332	63825449	63825392	63825392	Nonsense_Mutation	C	A	p.E20*
UCEC	TCGA-D1-A160-01	PSMD6	ENST00000497323.1	chr3	64007993:64008199:64008318:64008477:64008950:64009132,64007993:64008199:64008318:64008477:64009067:64009134,	64008319	64008477	64008410	64008410	Nonsense_Mutation	C	T	p.W71*
UCEC	TCGA-BS-A0UV-01	KBTBD8	ENST00000417314.2	chr3	67048730:67048795:67049404:67049615:67053618:67053908,	67049405	67049615	67049548	67049548	Nonsense_Mutation	G	T	p.E28*
UCEC	TCGA-BS-A0UF-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69075146:69075248:69077050:69077143:69077376:69077446,	69077051	69077143	69077056	69077056	Nonsense_Mutation	C	A	p.E918*
UCEC	TCGA-BS-A0UV-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69075146:69075248:69077050:69077143:69077376:69077446,	69077051	69077143	69077068	69077068	Nonsense_Mutation	C	A	p.E914*
UCEC	TCGA-AX-A0J0-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69084173:69084266:69087714:69087871:69087993:69088160,	69087715	69087871	69087783	69087783	Nonsense_Mutation	C	A	p.E695*
UCEC	TCGA-AX-A05Z-01	FOXP1	ENST00000327590.4	chr3	71019886:71019956:71021705:71021827:71026091:71026193,71021161:71021331:71021705:71021827:71026091:71026193,	71021706	71021827	71021728	71021728	Nonsense_Mutation	G	A	p.R544*
UCEC	TCGA-B5-A0JY-01	PPP4R2	ENST00000295862.9,ENST00000394284.3,ENST00000356692.5	chr3	73110173:73110211:73112823:73112898:73113153:73113297,	73112824	73112898	73112849	73112849	Nonsense_Mutation	C	T	p.R149*
UCEC	TCGA-BS-A0UF-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684173	77684173	Nonsense_Mutation	C	T	p.R1305*
UCEC	TCGA-B5-A11E-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684173	77684173	Nonsense_Mutation	C	T	p.R1305*
UCEC	TCGA-B5-A0JY-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78647960:78648077:78649262:78649459:78655882:78656191,	78649263	78649459	78649334	78649334	Nonsense_Mutation	G	A	p.R1624*
UCEC	TCGA-AX-A05Z-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78647960:78648077:78649262:78649459:78655882:78656191,	78649263	78649459	78649334	78649334	Nonsense_Mutation	G	A	p.R1624*
UCEC	TCGA-A5-A0VP-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78766912:78767033:78795892:78796050:78987750:78988077,	78795893	78796050	78795967	78795967	Nonsense_Mutation	G	A	p.R195*
UCEC	TCGA-B5-A0JY-01	ARL6	ENST00000462412.1,ENST00000335979.2,ENST00000496713.1,ENST00000463745.1,ENST00000493990.1,ENST00000394206.1	chr3	97486924:97487074:97499002:97499064:97499458:97499527,	97499003	97499064	97499058	97499058	Nonsense_Mutation	C	A	p.S60*
UCEC	TCGA-B5-A0JY-01	CPOX	ENST00000264193.2	chr3	98307556:98307698:98309475:98309586:98309855:98309909,	98309476	98309586	98309485	98309485	Nonsense_Mutation	C	A	p.E268*
UCEC	TCGA-B5-A11E-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000486004.1	chr3	98544177:98544210:98568304:98568442:98600383:98600611,	98568305	98568442	98568386	98568386	Nonsense_Mutation	C	A	p.E164*
UCEC	TCGA-B5-A0JY-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000486004.1	chr3	98544177:98544210:98568304:98568442:98600383:98600611,	98568305	98568442	98568435	98568435	Nonsense_Mutation	G	T	p.Y147*
UCEC	TCGA-BS-A0UV-01	NIT2	ENST00000465368.1	chr3	100059916:100060005:100064428:100065099:100067646:100067725,	100064429	100065099	100064474	100064474	Nonsense_Mutation	G	T	p.E128*
UCEC	TCGA-BS-A0UV-01	NIT2	ENST00000480073.1,ENST00000497785.1,ENST00000394140.4	chr3	100059916:100060005:100064428:100064522:100065024:100065099,	100064429	100064522	100064474	100064474	Nonsense_Mutation	G	T	p.E128*
UCEC	TCGA-AX-A05Z-01	LNP1	ENST00000466996.1	chr3	100148540:100148729:100170579:100170793:100174620:100175032,	100170580	100170793	100170629	100170629	Nonsense_Mutation	G	T	p.E75*
UCEC	TCGA-AX-A05Z-01	LNP1	ENST00000489752.1	chr3	100148540:100148729:100170523:100170793:100174620:100175032,	100170524	100170793	100170629	100170629	Nonsense_Mutation	G	T	p.E75*
UCEC	TCGA-AX-A05Z-01	LNP1	ENST00000383693.3	chr3	100148540:100148729:100170562:100170793:100174620:100175032,	100170563	100170793	100170629	100170629	Nonsense_Mutation	G	T	p.E75*
UCEC	TCGA-AP-A056-01	LNP1	ENST00000466996.1	chr3	100148540:100148729:100170579:100170793:100174620:100175032,	100170580	100170793	100170635	100170635	Nonsense_Mutation	C	T	p.R77*
UCEC	TCGA-AP-A056-01	LNP1	ENST00000489752.1	chr3	100148540:100148729:100170523:100170793:100174620:100175032,	100170524	100170793	100170635	100170635	Nonsense_Mutation	C	T	p.R77*
UCEC	TCGA-AP-A056-01	LNP1	ENST00000383693.3	chr3	100148540:100148729:100170562:100170793:100174620:100175032,	100170563	100170793	100170635	100170635	Nonsense_Mutation	C	T	p.R77*
UCEC	TCGA-AP-A059-01	TFG	ENST00000490574.1	chr3	100428449:100428565:100432486:100432713:100438818:100438902,100428221:100428275:100432486:100432713:100438818:100438902,	100432487	100432713	100432650	100432650	Nonsense_Mutation	C	T	p.Q41*
UCEC	TCGA-BS-A0UF-01	TFG	ENST00000490574.1	chr3	100428449:100428565:100432486:100432713:100438818:100438902,100428221:100428275:100432486:100432713:100438818:100438902,	100432487	100432713	100432653	100432653	Nonsense_Mutation	C	T	p.R42*
UCEC	TCGA-D1-A17Q-01	ABI3BP	ENST00000383691.4,ENST00000482765.1,ENST00000495591.1,ENST00000527943.1,ENST00000471714.1	chr3	100523635:100523710:100527004:100527079:100551107:100551149,100523635:100523710:100527004:100527079:100529255:100529321,	100527005	100527079	100527025	100527025	Nonsense_Mutation	C	A	p.E607*
UCEC	TCGA-AP-A059-01	ALCAM	ENST00000472644.2,ENST00000470756.1	chr3	105086186:105086325:105238910:105239011:105243132:105243352,	105238911	105239011	105238967	105238967	Nonsense_Mutation	C	T	p.R44*
UCEC	TCGA-AX-A05Z-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491739	107491739	Nonsense_Mutation	G	T	p.E391*
UCEC	TCGA-BS-A0UV-01	DPPA4	ENST00000495679.1,ENST00000487299.1,ENST00000335658.6	chr3	109047864:109047935:109049370:109049659:109050580:109050631,	109049371	109049659	109049638	109049638	Nonsense_Mutation	C	A	p.E138*
UCEC	TCGA-AX-A0J0-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603771	111603771	Nonsense_Mutation	C	T	p.R283*
UCEC	TCGA-AP-A051-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604254	111604254	Nonsense_Mutation	C	T	p.R444*
UCEC	TCGA-AP-A056-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604254	111604254	Nonsense_Mutation	C	T	p.R444*
UCEC	TCGA-B5-A0JY-01	GTPBP8	ENST00000473129.1,ENST00000467752.1,ENST00000383678.2	chr3	112709855:112710182:112713981:112714112:112715738:112715838,112711885:112711971:112713981:112714112:112715738:112715838,	112713982	112714112	112714102	112714102	Nonsense_Mutation	G	T	p.E186*
UCEC	TCGA-D1-A17Q-01	GTPBP8	ENST00000473129.1,ENST00000467752.1,ENST00000383678.2	chr3	112709855:112710182:112713981:112714112:112715738:112715838,112711885:112711971:112713981:112714112:112715738:112715838,	112713982	112714112	112714105	112714105	Nonsense_Mutation	C	T	p.R187*
UCEC	TCGA-D1-A16X-01	ZDHHC23	ENST00000498275.1,ENST00000330212.3,ENST00000478793.1	chr3	113672546:113673257:113675185:113675353:113677209:113677385,	113675186	113675353	113675205	113675205	Nonsense_Mutation	G	T	p.E298*
UCEC	TCGA-BS-A0UV-01	TIGIT	ENST00000481065.1,ENST00000383671.3,ENST00000486257.1	chr3	114012874:114012969:114014391:114014721:114018443:114018550,	114014392	114014721	114014580	114014580	Nonsense_Mutation	C	T	p.R84*
UCEC	TCGA-D1-A103-01	B4GALT4	ENST00000480814.1,ENST00000483209.1,ENST00000359213.3,ENST00000393765.2,ENST00000467604.1,ENST00000460321.1	chr3	118937558:118937619:118942904:118943092:118945655:118945888,	118942905	118943092	118943071	118943071	Nonsense_Mutation	G	A	p.R170*
UCEC	TCGA-B5-A11N-01	TIMMDC1	ENST00000492164.1,ENST00000494664.1	chr3	119222805:119222868:119236051:119236162:119242452:119242477,119219541:119219707:119236051:119236162:119242452:119242477,119217427:119217774:119236051:119236162:119242452:119242477,119232487:119232566:119236051:119236162:119242452:119242477,	119236052	119236162	119236128	119236128	Nonsense_Mutation	C	T	p.R225*
UCEC	TCGA-AP-A056-01	GSK3B	ENST00000264235.8	chr3	119582265:119582452:119595259:119595355:119624601:119624699,	119595260	119595355	119595266	119595266	Nonsense_Mutation	C	T	p.W301*
UCEC	TCGA-BS-A0UF-01	GSK3B	ENST00000264235.8,ENST00000316626.5	chr3	119642219:119642330:119666114:119666198:119720892:119721086,	119666115	119666198	119666150	119666150	Nonsense_Mutation	G	A	p.R111*
UCEC	TCGA-BS-A0TC-01	GSK3B	ENST00000316626.5	chr3	119666114:119666198:119720892:119721086:119812193:119812513,	119720893	119721086	119720937	119720937	Nonsense_Mutation	C	A	p.E80*
UCEC	TCGA-BS-A0UF-01	GPR156	ENST00000461057.1	chr3	119904145:119904241:119905516:119905630:119911785:119911896,	119905517	119905630	119905556	119905556	Nonsense_Mutation	C	T	p.W183*
UCEC	TCGA-BS-A0UF-01	GPR156	ENST00000315843.3,ENST00000464295.1	chr3	119904145:119904241:119905504:119905630:119911785:119911896,	119905505	119905630	119905556	119905556	Nonsense_Mutation	C	T	p.W183*
UCEC	TCGA-BS-A0TC-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789*
UCEC	TCGA-BS-A0UF-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097679	121097679	Nonsense_Mutation	C	T	p.R789*
UCEC	TCGA-A5-A0GP-01	POLQ	ENST00000264233.5,ENST00000488282.1	chr3	121240849:121240996:121248491:121248639:121251836:121252056,	121248492	121248639	121248606	121248606	Nonsense_Mutation	C	A	p.E332*
UCEC	TCGA-AP-A0LM-01	GOLGB1	ENST00000393667.3,ENST00000482512.1,ENST00000491690.1,ENST00000340645.5	chr3	121383376:121383461:121383772:121383878:121386322:121386457,	121383773	121383878	121383778	121383778	Nonsense_Mutation	G	A	p.R3214*
UCEC	TCGA-B5-A0JY-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573588	121573588	Nonsense_Mutation	G	T	p.E86*
UCEC	TCGA-BS-A0UJ-01	ILDR1	ENST00000344209.5,ENST00000460554.1,ENST00000273691.3,ENST00000462014.1	chr3	121720154:121720301:121720591:121720711:121724090:121724240,	121720592	121720711	121720678	121720678	Nonsense_Mutation	C	T	p.W138*
UCEC	TCGA-A5-A0GP-01	CCDC58	ENST00000291458.5,ENST00000479899.1,ENST00000479414.1	chr3	122081814:122081874:122087022:122087169:122090521:122090577,	122087023	122087169	122087074	122087074	Nonsense_Mutation	C	A	p.E88*
UCEC	TCGA-AP-A051-01	DTX3L	ENST00000296161.4	chr3	122284705:122284917:122287335:122288871:122289301:122289382,	122287336	122288871	122288287	122288287	Nonsense_Mutation	G	T	p.E451*
UCEC	TCGA-AP-A056-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122419058	122419058	Nonsense_Mutation	G	T	p.E553*
UCEC	TCGA-BS-A0UF-01	HSPBAP1	ENST00000306103.2,ENST00000465044.1,ENST00000467643.1	chr3	122487547:122487729:122496567:122496753:122512463:122512507,	122496568	122496753	122496715	122496715	Nonsense_Mutation	C	A	p.E35*
UCEC	TCGA-AX-A05Z-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124165609:124165732:124174023:124174206:124175456:124175575,	124174024	124174206	124174168	124174168	Nonsense_Mutation	C	T	p.R1231*
UCEC	TCGA-AP-A059-01	KALRN	ENST00000454902.1,ENST00000428018.2,ENST00000393496.1	chr3	124351266:124351550:124352695:124352800:124369654:124369762,	124352696	124352800	124352735	124352735	Nonsense_Mutation	G	T	p.E1834*
UCEC	TCGA-D1-A103-01	UMPS	ENST00000462091.1,ENST00000460034.1,ENST00000536109.1,ENST00000487622.1,ENST00000232607.2,ENST00000474588.1,ENST00000467167.1,ENST00000538242.1	chr3	124456977:124457086:124458870:124459046:124460998:124461113,	124458871	124459046	124458954	124458954	Nonsense_Mutation	G	T	p.E356*
UCEC	TCGA-AX-A0J1-01	ITGB5	ENST00000481591.1,ENST00000296181.4	chr3	124487859:124487960:124492536:124492759:124515234:124515437,	124492537	124492759	124492537	124492537	Nonsense_Mutation	C	A	p.E329*
UCEC	TCGA-D1-A103-01	MUC13	ENST00000478191.1,ENST00000490147.1,ENST00000311075.3	chr3	124641043:124641150:124642373:124642496:124646378:124646447,	124642374	124642496	124642454	124642454	Nonsense_Mutation	G	T	p.S185*
UCEC	TCGA-AP-A059-01	SNX4	ENST00000536067.1,ENST00000251775.4,ENST00000471751.1	chr3	125166554:125166670:125170148:125170263:125172653:125172799,	125170149	125170263	125170262	125170262	Nonsense_Mutation	C	A	p.E398*
UCEC	TCGA-D1-A103-01	SLC41A3	ENST00000513723.1	chr3	125769785:125769893:125775200:125775356:125786789:125787023,	125775201	125775356	125775344	125775344	Nonsense_Mutation	G	A	p.R18*
UCEC	TCGA-D1-A17M-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126710226:126710409:126722172:126722313:126723453:126723554,	126722173	126722313	126722311	126722311	Nonsense_Mutation	C	T	p.Q483*
UCEC	TCGA-AP-A0LM-01	MGLL	ENST00000487473.1	chr3	127413985:127414033:127429418:127429508:127439895:127440006,127410981:127411166:127429418:127429508:127439895:127440006,	127429419	127429508	127429498	127429498	Nonsense_Mutation	G	A	p.R70*
UCEC	TCGA-BS-A0UV-01	RUVBL1	ENST00000464873.1,ENST00000417360.1,ENST00000472125.1,ENST00000322623.5	chr3	127817724:127817788:127819437:127819587:127820401:127820462,	127819438	127819587	127819494	127819494	Nonsense_Mutation	C	A	p.E233*
UCEC	TCGA-BS-A0UF-01	ACAD9	ENST00000508971.1,ENST00000511325.1,ENST00000308982.7,ENST00000511526.1,ENST00000505867.1,ENST00000511227.1	chr3	128624963:128625092:128627027:128627107:128627815:128627942,	128627028	128627107	128627037	128627037	Nonsense_Mutation	G	T	p.E430*
UCEC	TCGA-D1-A103-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129156119	129156119	Nonsense_Mutation	G	T	p.S123*
UCEC	TCGA-D1-A103-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129156119	129156119	Nonsense_Mutation	G	T	p.S123*
UCEC	TCGA-D1-A103-01	PLXND1	ENST00000324093.4,ENST00000393239.1,ENST00000512744.1	chr3	129279531:129279566:129280488:129280552:129280642:129280746,	129280489	129280552	129280492	129280492	Nonsense_Mutation	G	A	p.R1664*
UCEC	TCGA-AP-A0LM-01	PIK3R4	ENST00000356763.3	chr3	130452391:130452974:130454712:130454846:130463329:130464108,	130454713	130454846	130454820	130454820	Nonsense_Mutation	C	A	p.E254*
UCEC	TCGA-BS-A0UV-01	ATP2C1	ENST00000508660.1	chr3	130694180:130694332:130699425:130699523:130711794:130711845,	130699426	130699523	130699476	130699476	Nonsense_Mutation	G	T	p.E598*
UCEC	TCGA-AX-A0J0-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743298	130743298	Nonsense_Mutation	G	A	p.R285*
UCEC	TCGA-D1-A167-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743388	130743388	Nonsense_Mutation	G	A	p.R255*
UCEC	TCGA-AP-A051-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132179093:132179201:132179893:132180049:132181310:132181367,	132179894	132180049	132179925	132179925	Nonsense_Mutation	C	A	p.S530*
UCEC	TCGA-AX-A05Z-01	DNAJC13	ENST00000260818.6	chr3	132242000:132242043:132242383:132242557:132244453:132244633,	132242384	132242557	132242498	132242498	Nonsense_Mutation	G	T	p.E2001*
UCEC	TCGA-B5-A11H-01	ACAD11	ENST00000264990.6,ENST00000485198.1,ENST00000496418.1,ENST00000545291.1	chr3	132279944:132280061:132294615:132294770:132295787:132295859,	132294616	132294770	132294651	132294651	Nonsense_Mutation	G	A	p.Q656*
UCEC	TCGA-BS-A0UF-01	TOPBP1	ENST00000260810.5	chr3	133329847:133329985:133331232:133331396:133335657:133335769,	133331233	133331396	133331328	133331328	Nonsense_Mutation	G	A	p.R1314*
UCEC	TCGA-BS-A0UF-01	TF	ENST00000494430.1	chr3	133472438:133472547:133473346:133473515:133474206:133474258,	133473347	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132*
UCEC	TCGA-BS-A0UF-01	TF	ENST00000493011.1,ENST00000482271.1,ENST00000264998.3,ENST00000402696.3	chr3	133472438:133472547:133473338:133473515:133474206:133474258,	133473339	133473515	133473407	133473407	Nonsense_Mutation	C	T	p.R132*
UCEC	TCGA-BS-A0UF-01	SRPRB	ENST00000466636.1,ENST00000494297.1,ENST00000466490.2,ENST00000481356.1	chr3	133529967:133530043:133534433:133534570:133535721:133535776,	133534434	133534570	133534544	133534544	Nonsense_Mutation	C	A	p.S174*
UCEC	TCGA-D1-A17Q-01	RYK	ENST00000296084.4,ENST00000427044.2,ENST00000460933.1	chr3	133921573:133921718:133926315:133926369:133928538:133928673,	133926316	133926369	133926324	133926324	Nonsense_Mutation	C	A	p.E192*
UCEC	TCGA-A5-A0VP-01	PCCB	ENST00000459873.1,ENST00000478469.1,ENST00000484181.1,ENST00000251654.4,ENST00000475214.1,ENST00000466072.1,ENST00000462542.1,ENST00000465423.1,ENST00000494742.1,ENST00000471595.1	chr3	135974698:135974817:135975396:135975465:135979320:135979377,	135975397	135975465	135975424	135975424	Nonsense_Mutation	C	T	p.R111*
UCEC	TCGA-A5-A0GP-01	STAG1	ENST00000465961.1,ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136067999:136068205:136076561:136076690:136077989:136078031,	136076562	136076690	136076581	136076581	Nonsense_Mutation	G	A	p.R1016*
UCEC	TCGA-B5-A0JY-01	STAG1	ENST00000465961.1,ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136067999:136068205:136076561:136076690:136077989:136078031,	136076562	136076690	136076581	136076581	Nonsense_Mutation	G	A	p.R1016*
UCEC	TCGA-BS-A0UF-01	CEP70	ENST00000489254.1	chr3	138251355:138251412:138256019:138256189:138289159:138289340,138251355:138251412:138256019:138256189:138310695:138310798,	138256020	138256189	138256147	138256147	Nonsense_Mutation	C	A	p.E170*
UCEC	TCGA-BS-A0UF-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1	chr3	138413627:138413749:138417748:138417937:138423284:138423335,	138417749	138417937	138417901	138417901	Nonsense_Mutation	C	A	p.E540*
UCEC	TCGA-BS-A0UL-01	NMNAT3	ENST00000511444.1	chr3	139280174:139280234:139297713:139297897:139346457:139346603,139280174:139280234:139297713:139297897:139356804:139356904,	139297714	139297897	139297817	139297817	Nonsense_Mutation	G	A	p.R27*
UCEC	TCGA-BS-A0UV-01	GK5	ENST00000392993.2,ENST00000466685.3,ENST00000489085.1,ENST00000460544.1,ENST00000480757.1,ENST00000487672.1,ENST00000544571.1,ENST00000472759.1	chr3	141932367:141932443:141934440:141934534:141944150:141944258,	141934441	141934534	141934453	141934453	Nonsense_Mutation	C	A	p.E77*
UCEC	TCGA-AX-A0J0-01	XRN1	ENST00000264951.4,ENST00000392981.2,ENST00000463916.1	chr3	142144270:142144380:142145585:142145683:142151502:142151735,	142145586	142145683	142145634	142145634	Nonsense_Mutation	C	A	p.E120*
UCEC	TCGA-BS-A0UV-01	ATR	ENST00000350721.4,ENST00000514393.1,ENST00000383101.3	chr3	142215238:142215362:142215854:142216034:142217438:142217616,	142215855	142216034	142215937	142215937	Nonsense_Mutation	G	A	p.R1886*
UCEC	TCGA-AP-A051-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281203	142281203	Nonsense_Mutation	G	T	p.C347*
UCEC	TCGA-AP-A056-01	PLSCR1	ENST00000487389.1,ENST00000478267.1,ENST00000472349.1,ENST00000486631.1,ENST00000468985.1,ENST00000342435.4,ENST00000448787.2	chr3	146239330:146239492:146239619:146239840:146243391:146243434,	146239620	146239840	146239685	146239685	Nonsense_Mutation	C	A	p.E171*
UCEC	TCGA-AP-A056-01	PLSCR1	ENST00000462666.1	chr3	146239330:146239492:146239619:146239768:146243391:146243434,	146239620	146239768	146239685	146239685	Nonsense_Mutation	C	A	p.E171*
UCEC	TCGA-AP-A056-01	PLSCR1	ENST00000489775.1	chr3	146234944:146234954:146239330:146239840:146243391:146243434,	146239331	146239840	146239685	146239685	Nonsense_Mutation	C	A	p.E171*
UCEC	TCGA-BS-A0UF-01	PLSCR1	ENST00000448205.1,ENST00000493432.1,ENST00000463777.1	chr3	146239619:146239840:146243391:146243434:146251256:146251337,146234944:146234954:146243391:146243434:146251256:146251337,	146243392	146243434	146243416	146243416	Nonsense_Mutation	G	T	p.S38*
UCEC	TCGA-B5-A11N-01	CP	ENST00000479771.1	chr3	148891444:148891517:148894036:148894199:148895626:148895694,148883732:148883837:148894036:148894199:148895626:148895694,	148894037	148894199	148894139	148894139	Nonsense_Mutation	C	A	p.E1027*
UCEC	TCGA-B5-A11N-01	CP	ENST00000494544.1	chr3	148891444:148891517:148894024:148894199:148895626:148895694,	148894025	148894199	148894139	148894139	Nonsense_Mutation	C	A	p.E1027*
UCEC	TCGA-AP-A056-01	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148925149:148925404:148926997:148927171:148927953:148928166,	148926998	148927171	148927151	148927151	Nonsense_Mutation	C	A	p.E210*
UCEC	TCGA-AX-A0J0-01	RNF13	ENST00000467996.1,ENST00000474348.1,ENST00000459632.1,ENST00000466795.1,ENST00000344229.3,ENST00000392894.3,ENST00000491086.1,ENST00000468648.1,ENST00000490631.1	chr3	149531051:149531140:149589815:149589941:149613259:149613285,149570302:149570383:149589815:149589941:149613259:149613285,	149589816	149589941	149589852	149589852	Nonsense_Mutation	G	T	p.E78*
UCEC	TCGA-AX-A0J0-01	EIF2A	ENST00000494558.1	chr3	150276174:150276249:150281301:150281401:150282085:150282164,	150281302	150281401	150281343	150281343	Nonsense_Mutation	T	G	p.L103*
UCEC	TCGA-B5-A0JY-01	MED12L	ENST00000474524.1	chr3	151129065:151129295:151130926:151131083:151134099:151134210,	151130927	151131083	151131060	151131060	Nonsense_Mutation	C	T	p.R2057*
UCEC	TCGA-BS-A0UV-01	AADACL2	ENST00000356517.3	chr3	151451714:151451961:151458433:151458656:151461880:151461950,	151458434	151458656	151458473	151458473	Nonsense_Mutation	G	T	p.E60*
UCEC	TCGA-AX-A05Z-01	C3orf33	ENST00000482061.2,ENST00000534941.1,ENST00000486435.1,ENST00000340171.2	chr3	155485306:155485458:155493489:155493637:155520320:155520380,	155493490	155493637	155493538	155493538	Nonsense_Mutation	C	A	p.E49*
UCEC	TCGA-BS-A0UV-01	C3orf33	ENST00000340171.2	chr3	155493489:155493637:155520320:155520380:155523385:155523512,155485306:155485458:155520320:155520380:155523927:155524040,155493489:155493637:155520320:155520380:155523927:155524040,	155520321	155520380	155520326	155520326	Nonsense_Mutation	G	A	p.R14*
UCEC	TCGA-AP-A056-01	SLC33A1	ENST00000359479.3	chr3	155551645:155551830:155560220:155560408:155571011:155571106,	155560221	155560408	155560319	155560319	Nonsense_Mutation	C	A	p.E289*
UCEC	TCGA-BS-A0UV-01	GMPS	ENST00000496455.2,ENST00000295920.7	chr3	155632207:155632359:155633807:155633981:155637021:155637127,	155633808	155633981	155633955	155633955	Nonsense_Mutation	G	T	p.E396*
UCEC	TCGA-D1-A0ZO-01	RSRC1	ENST00000480820.1,ENST00000480119.1,ENST00000475278.2,ENST00000295930.3,ENST00000312179.6,ENST00000482822.2,ENST00000464171.1	chr3	158072645:158072697:158178723:158178792:158254880:158254987,	158178724	158178792	158178785	158178785	Nonsense_Mutation	G	T	p.G109*
UCEC	TCGA-B5-A11E-01	MLF1	ENST00000355893.5	chr3	158288983:158289180:158310222:158310370:158314650:158314734,158289049:158289136:158310222:158310370:158314650:158314734,	158310223	158310370	158310254	158310254	Nonsense_Mutation	C	T	p.R27*
UCEC	TCGA-BS-A0TC-01	MLF1	ENST00000355893.5	chr3	158288983:158289180:158310222:158310370:158314650:158314734,158289049:158289136:158310222:158310370:158314650:158314734,	158310223	158310370	158310341	158310341	Nonsense_Mutation	G	T	p.G56*
UCEC	TCGA-AP-A051-01	GFM1	ENST00000478254.1,ENST00000486715.1,ENST00000264263.5	chr3	158402419:158402457:158407951:158408112:158408927:158408981,	158407952	158408112	158408050	158408050	Nonsense_Mutation	C	T	p.R670*
UCEC	TCGA-B5-A0JY-01	RARRES1	ENST00000237696.5	chr3	158415696:158415759:158422579:158422716:158428526:158428661,	158422580	158422716	158422610	158422610	Nonsense_Mutation	G	T	p.Y214*
UCEC	TCGA-AX-A0J1-01	MFSD1	ENST00000471266.1	chr3	158522111:158522160:158523129:158523263:158524828:158524871,	158523130	158523263	158523262	158523262	Nonsense_Mutation	C	T	p.R110*
UCEC	TCGA-AX-A0J1-01	MFSD1	ENST00000474670.2,ENST00000415822.2,ENST00000482835.1,ENST00000264266.8,ENST00000471500.1,ENST00000476860.1,ENST00000486568.1	chr3	158522111:158522160:158523150:158523263:158524828:158524871,	158523151	158523263	158523262	158523262	Nonsense_Mutation	C	T	p.R110*
UCEC	TCGA-AP-A051-01	KPNA4	ENST00000334256.4	chr3	160233239:160233368:160239566:160239698:160243587:160243632,	160239567	160239698	160239644	160239644	Nonsense_Mutation	G	A	p.Q276*
UCEC	TCGA-BS-A0UV-01	NMD3	ENST00000472947.1,ENST00000351193.2,ENST00000460469.1	chr3	160956517:160956614:160958833:160958951:160960295:160960441,	160958834	160958951	160958906	160958906	Nonsense_Mutation	C	T	p.R276*
UCEC	TCGA-AP-A051-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547333	165547333	Nonsense_Mutation	T	A	p.K497*
UCEC	TCGA-AP-A051-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547468	165547468	Nonsense_Mutation	G	A	p.R452*
UCEC	TCGA-B5-A0JY-01	ZBBX	ENST00000307529.5,ENST00000455345.2,ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167016092:167016246:167023430:167023738:167031761:167031904,	167023431	167023738	167023502	167023502	Nonsense_Mutation	C	A	p.E552*
UCEC	TCGA-AP-A0LM-01	WDR49	ENST00000493061.1	chr3	167240119:167240272:167246839:167247027:167248902:167248977,	167246840	167247027	167246922	167246922	Nonsense_Mutation	G	A	p.R499*
UCEC	TCGA-D1-A17Q-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078546	170078546	Nonsense_Mutation	G	T	p.E143*
UCEC	TCGA-D1-A16X-01	SLC2A2	ENST00000461867.1,ENST00000382808.4,ENST00000497642.1,ENST00000314251.3,ENST00000469787.1	chr3	170723208:170723261:170723731:170723894:170724936:170725052,	170723732	170723894	170723772	170723772	Nonsense_Mutation	G	T	p.Y245*
UCEC	TCGA-BS-A0UF-01	TNIK	ENST00000538048.1,ENST00000369326.5	chr3	170819237:170819422:170825808:170825951:170828502:170828666,	170825809	170825951	170825889	170825889	Nonsense_Mutation	C	A	p.E783*
UCEC	TCGA-BS-A0UF-01	TNIK	ENST00000460047.1,ENST00000284483.8,ENST00000475336.1,ENST00000470834.1	chr3	170819237:170819422:170825853:170825951:170828502:170828666,	170825854	170825951	170825889	170825889	Nonsense_Mutation	C	A	p.E783*
UCEC	TCGA-D1-A167-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5,ENST00000342215.6,ENST00000471075.1	chr3	171392289:171392403:171394504:171394623:171395355:171395484,	171394505	171394623	171394540	171394540	Nonsense_Mutation	C	T	p.W584*
UCEC	TCGA-AX-A0J0-01	TNFSF10	ENST00000430881.1	chr3	172223451:172224709:172232650:172232788:172241042:172241100,172229406:172229449:172232650:172232788:172241042:172241100,172227006:172227111:172232650:172232788:172241042:172241100,	172232651	172232788	172232743	172232743	Nonsense_Mutation	C	A	p.E60*
UCEC	TCGA-AP-A059-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174814660	174814660	Nonsense_Mutation	C	T	p.Q42*
UCEC	TCGA-BS-A0UV-01	MFN1	ENST00000480636.1	chr3	179095131:179095236:179096128:179096602:179103356:179103509,	179096129	179096602	179096177	179096177	Nonsense_Mutation	C	T	p.R460*
UCEC	TCGA-AX-A05Z-01	MRPL47	ENST00000259038.2	chr3	179319517:179319578:179320439:179320525:179322314:179322428,	179320440	179320525	179320488	179320488	Nonsense_Mutation	C	A	p.E66*
UCEC	TCGA-D1-A17Q-01	MRPL47	ENST00000259038.2	chr3	179319517:179319578:179320439:179320525:179322314:179322428,	179320440	179320525	179320488	179320488	Nonsense_Mutation	C	A	p.E66*
UCEC	TCGA-D1-A103-01	MRPL47	ENST00000259038.2	chr3	179319517:179319578:179320439:179320525:179322314:179322428,	179320440	179320525	179320488	179320488	Nonsense_Mutation	C	A	p.E66*
UCEC	TCGA-D1-A16X-01	ATP11B	ENST00000323116.5,ENST00000498086.1	chr3	182575665:182575816:182576949:182577147:182583243:182583486,	182576950	182577147	182577014	182577014	Nonsense_Mutation	C	A	p.S356*
UCEC	TCGA-BS-A0UV-01	KLHL24	ENST00000242810.6,ENST00000454652.2	chr3	183361267:183361330:183368083:183369064:183381245:183381430,	183368084	183369064	183368370	183368370	Nonsense_Mutation	G	T	p.E76*
UCEC	TCGA-AX-A063-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000435888.1,ENST00000469056.1,ENST00000317096.4	chr3	183580540:183580589:183584412:183584553:183585652:183585848,	183584413	183584553	183584518	183584518	Nonsense_Mutation	C	T	p.W119*
UCEC	TCGA-AP-A056-01	ABCC5	ENST00000437205.1,ENST00000334444.6,ENST00000265586.6	chr3	183646534:183646613:183655688:183655848:183660514:183660568,	183655689	183655848	183655744	183655744	Nonsense_Mutation	G	A	p.R1267*
UCEC	TCGA-AP-A056-01	EIF2B5	ENST00000491144.1	chr3	183854399:183854524:183855407:183855863:183855953:183856034,	183855408	183855863	183855448	183855448	Nonsense_Mutation	C	T	p.R121*
UCEC	TCGA-AP-A054-01	VPS8	ENST00000465213.1,ENST00000436792.2,ENST00000287546.4,ENST00000446204.2,ENST00000437079.3	chr3	184580684:184580855:184584663:184584738:184585811:184585847,	184584664	184584738	184584687	184584687	Nonsense_Mutation	T	A	p.C473*
UCEC	TCGA-B5-A11Q-01	VPS8	ENST00000436792.2,ENST00000458721.1,ENST00000287546.4,ENST00000437079.3	chr3	184587310:184587316:184588503:184588593:184603897:184603944,	184588504	184588593	184588534	184588534	Nonsense_Mutation	C	T	p.R559*
UCEC	TCGA-BS-A0UV-01	KNG1	ENST00000265023.4,ENST00000287611.2	chr3	186442876:186443049:186445025:186445133:186449333:186449418,	186445026	186445133	186445126	186445126	Nonsense_Mutation	G	A	p.W222*
UCEC	TCGA-B5-A11E-01	EIF4A2	ENST00000498746.1,ENST00000323963.5,ENST00000425053.1,ENST00000440191.2	chr3	186502352:186502485:186502750:186502890:186503671:186503702,	186502751	186502890	186502819	186502819	Nonsense_Mutation	C	T	p.Q93*
UCEC	TCGA-BS-A0UF-01	EIF4A2	ENST00000426808.1,ENST00000429589.1,ENST00000443963.1,ENST00000475653.1,ENST00000356531.5	chr3	186502352:186502485:186503671:186503840:186503952:186504062,	186503672	186503840	186503753	186503753	Nonsense_Mutation	G	T	p.E144*
UCEC	TCGA-BS-A0UV-01	RFC4	ENST00000296273.2,ENST00000447345.1,ENST00000494047.1,ENST00000427785.1,ENST00000433496.1,ENST00000392481.2,ENST00000418288.1,ENST00000489028.1	chr3	186512487:186512566:186515323:186515403:186518905:186518984,	186515324	186515403	186515334	186515334	Nonsense_Mutation	C	A	p.E94*
UCEC	TCGA-BG-A0VW-01	BCL6	ENST00000450123.2,ENST00000419510.2,ENST00000232014.4,ENST00000406870.2	chr3	187440219:187440389:187442728:187442866:187443286:187443411,	187442729	187442866	187442758	187442758	Nonsense_Mutation	G	A	p.R650*
UCEC	TCGA-AP-A051-01	FGF12	ENST00000264730.3,ENST00000430714.1,ENST00000454309.2,ENST00000450716.1,ENST00000445105.2,ENST00000448795.1	chr3	191861848:191861916:191888246:191888445:192053149:192053253,	191888247	191888445	191888349	191888349	Nonsense_Mutation	G	A	p.R171*
UCEC	TCGA-D1-A16X-01	MUC4	ENST00000466475.1,ENST00000477086.1,ENST00000448861.1,ENST00000346145.4,ENST00000463781.3,ENST00000478156.1,ENST00000392407.2,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1,ENST00000349607.4	chr3	195492140:195492320:195493533:195493622:195495892:195496023,	195493534	195493622	195493607	195493607	Nonsense_Mutation	G	A	p.R4429*
UCEC	TCGA-AX-A0J0-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516941	195516941	Nonsense_Mutation	C	A	p.E504*
UCEC	TCGA-AP-A056-01	PCYT1A	ENST00000292823.2,ENST00000431016.1,ENST00000419333.1	chr3	195965661:195965765:195966417:195966606:195968818:195968941,	195966418	195966606	195966531	195966531	Nonsense_Mutation	C	A	p.E262*
UCEC	TCGA-BS-A0UV-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000392381.3,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4	chr3	196867015:196867135:196869588:196869639:196876613:196876667,	196869589	196869639	196869606	196869606	Nonsense_Mutation	C	A	p.E224*
UCEC	TCGA-BS-A0UV-01	IQCG	ENST00000490748.1,ENST00000478903.1,ENST00000265239.6,ENST00000455191.1	chr3	197618316:197618418:197619498:197619630:197639545:197639620,	197619499	197619630	197619579	197619579	Nonsense_Mutation	C	A	p.E339*
UCEC	TCGA-B5-A11N-01	ZNF141	ENST00000512994.1	chr4	338123:338219:366452:366796:376883:377760,	366453	366796	366629	366629	Nonsense_Mutation	G	T	p.E135*
UCEC	TCGA-AP-A059-01	GAK	ENST00000505819.1,ENST00000511163.1,ENST00000314167.4	chr4	887730:887797:890247:890337:891820:891946,	890248	890337	890301	890301	Nonsense_Mutation	C	A	p.E230*
UCEC	TCGA-B5-A0JY-01	IDUA	ENST00000509948.1,ENST00000453894.1,ENST00000504568.1,ENST00000247933.4,ENST00000514192.1,ENST00000514698.1,ENST00000514224.1,ENST00000502910.1	chr4	994399:994485:994669:994777:995255:995351,	994670	994777	994704	994704	Nonsense_Mutation	C	A	p.S127*
UCEC	TCGA-AP-A056-01	RNF212	ENST00000508428.1	chr4	1073430:1073476:1075354:1075407:1079683:1079742,	1075355	1075407	1075399	1075399	Nonsense_Mutation	G	T	p.S124*
UCEC	TCGA-AX-A0J1-01	MAEA	ENST00000509531.1,ENST00000514708.1	chr4	1309184:1309388:1326544:1326653:1330648:1330782,	1326545	1326653	1326590	1326590	Nonsense_Mutation	C	T	p.R168*
UCEC	TCGA-BS-A0UJ-01	SLBP	ENST00000429429.2,ENST00000483348.1,ENST00000488267.1,ENST00000489418.1,ENST00000318386.4	chr4	1696500:1696567:1697928:1698078:1701290:1701428,	1697929	1698078	1698020	1698020	Nonsense_Mutation	G	A	p.R180*
UCEC	TCGA-BS-A0UF-01	ADD1	ENST00000398129.1,ENST00000264758.7,ENST00000514940.1,ENST00000446856.1	chr4	2916668:2916767:2927740:2927839:2929897:2930018,	2927741	2927839	2927770	2927770	Nonsense_Mutation	G	T	p.E629*
UCEC	TCGA-B5-A0JY-01	GRK4	ENST00000504933.1,ENST00000398051.4,ENST00000345167.6,ENST00000398052.4,ENST00000505271.1	chr4	3024140:3024178:3029638:3029728:3030927:3031136,	3029639	3029728	3029698	3029698	Nonsense_Mutation	C	T	p.R344*
UCEC	TCGA-D1-A17Q-01	STX18	ENST00000306200.2,ENST00000505286.1	chr4	4425244:4425314:4426890:4426949:4436496:4436584,	4426891	4426949	4426919	4426919	Nonsense_Mutation	C	A	p.E245*
UCEC	TCGA-AP-A059-01	AFAP1	ENST00000358461.2,ENST00000420658.1,ENST00000513842.1,ENST00000360265.4,ENST00000382543.3,ENST00000505447.1	chr4	7770570:7770735:7774546:7774737:7776465:7776630,	7774547	7774737	7774651	7774651	Nonsense_Mutation	C	A	p.E717*
UCEC	TCGA-BS-A0UJ-01	HTRA3	ENST00000307358.2	chr4	8304189:8304238:8305910:8306006:8307697:8308838,	8305911	8306006	8305971	8305971	Nonsense_Mutation	T	G	p.Y387*
UCEC	TCGA-B5-A0JY-01	ACOX3	ENST00000503233.1,ENST00000413009.2,ENST00000356406.5	chr4	8416580:8416655:8417492:8417726:8418104:8418262,	8417493	8417726	8417630	8417630	Nonsense_Mutation	G	A	p.R81*
UCEC	TCGA-AP-A0LM-01	SLC2A9	ENST00000513129.1,ENST00000505104.1,ENST00000309065.3,ENST00000506583.1,ENST00000264784.3	chr4	9982215:9982361:9987292:9987417:9998404:9998565,	9987293	9987417	9987320	9987320	Nonsense_Mutation	C	A	p.G170*
UCEC	TCGA-BS-A0UV-01	RAB28	ENST00000288723.4,ENST00000338176.4,ENST00000330852.5	chr4	13383114:13383218:13462322:13462452:13475941:13475946,	13462323	13462452	13462378	13462378	Nonsense_Mutation	C	A	p.E35*
UCEC	TCGA-AP-A051-01	RAB28	ENST00000288723.4,ENST00000338176.4,ENST00000330852.5	chr4	13383114:13383218:13462322:13462452:13475941:13475946,	13462323	13462452	13462440	13462440	Nonsense_Mutation	C	T	p.W6*
UCEC	TCGA-BS-A0UF-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1	chr4	15572020:15572119:15575772:15575949:15581590:15581794,	15575773	15575949	15575941	15575941	Nonsense_Mutation	C	T	p.R1255*
UCEC	TCGA-B5-A11R-01	PROM1	ENST00000543373.1,ENST00000505450.1	chr4	16040568:16040624:16077309:16077741:16085600:16085668,	16077310	16077741	16077474	16077474	Nonsense_Mutation	G	C	p.S19*
UCEC	TCGA-AX-A0J1-01	TAPT1	ENST00000304584.8,ENST00000513782.1	chr4	16188157:16188227:16189879:16189978:16192983:16193071,	16189880	16189978	16189932	16189932	Nonsense_Mutation	G	T	p.C57*
UCEC	TCGA-AP-A056-01	LDB2	ENST00000508918.1,ENST00000503178.2,ENST00000502640.1,ENST00000441778.2,ENST00000304523.5,ENST00000515064.1	chr4	16510163:16510309:16513603:16513727:16587544:16587628,	16513604	16513727	16513690	16513690	Nonsense_Mutation	G	A	p.R140*
UCEC	TCGA-AP-A0LM-01	LDB2	ENST00000508918.1,ENST00000503178.2,ENST00000502640.1,ENST00000441778.2,ENST00000304523.5,ENST00000515064.1	chr4	16510163:16510309:16513603:16513727:16587544:16587628,	16513604	16513727	16513690	16513690	Nonsense_Mutation	G	A	p.R140*
UCEC	TCGA-EY-A1GS-01	LDB2	ENST00000508918.1,ENST00000503178.2,ENST00000512345.1,ENST00000503153.1,ENST00000502640.1,ENST00000441778.2,ENST00000507464.1,ENST00000304523.5,ENST00000515064.1	chr4	16513627:16513727:16587544:16587628:16590332:16590455,	16587545	16587628	16587607	16587607	Nonsense_Mutation	C	T	p.W106*
UCEC	TCGA-AX-A05Z-01	LDB2	ENST00000506732.1,ENST00000502640.1,ENST00000441778.2,ENST00000304523.5	chr4	16597325:16597498:16760780:16760883:16899976:16900001,	16760781	16760883	16760787	16760787	Nonsense_Mutation	G	A	p.R77*
UCEC	TCGA-B5-A0JY-01	LAP3	ENST00000606142.1,ENST00000509583.1,ENST00000508497.1,ENST00000512397.1	chr4	17579119:17579190:17581446:17581562:17583382:17583437,	17581447	17581562	17581474	17581474	Nonsense_Mutation	G	T	p.E44*
UCEC	TCGA-BS-A0UV-01	LAP3	ENST00000606142.1,ENST00000509583.1,ENST00000508497.1,ENST00000512397.1	chr4	17579119:17579190:17581446:17581562:17583382:17583437,	17581447	17581562	17581474	17581474	Nonsense_Mutation	G	T	p.E44*
UCEC	TCGA-BS-A0UV-01	NCAPG	ENST00000251496.2,ENST00000514176.1,ENST00000509719.1	chr4	17818883:17819076:17819561:17819711:17824605:17824746,	17819562	17819711	17819656	17819656	Nonsense_Mutation	G	T	p.E355*
UCEC	TCGA-B5-A11E-01	NCAPG	ENST00000251496.2,ENST00000514176.1,ENST00000510063.1	chr4	17832619:17832739:17835921:17836146:17838781:17838784,	17835922	17836146	17836072	17836072	Nonsense_Mutation	G	T	p.E679*
UCEC	TCGA-D1-A103-01	PACRGL	ENST00000503747.1,ENST00000508952.1	chr4	20706282:20706437:20714410:20714545:20715054:20715084,20711305:20711396:20714410:20714545:20715054:20715084,20709425:20709493:20714410:20714545:20715054:20715084,	20714411	20714545	20714465	20714465	Nonsense_Mutation	G	T	p.E141*
UCEC	TCGA-AX-A0J0-01	PACRGL	ENST00000503747.1,ENST00000508952.1	chr4	20706282:20706437:20714410:20714545:20715054:20715084,20711305:20711396:20714410:20714545:20715054:20715084,20709425:20709493:20714410:20714545:20715054:20715084,	20714411	20714545	20714465	20714465	Nonsense_Mutation	G	T	p.E141*
UCEC	TCGA-AX-A0J1-01	DHX15	ENST00000336812.4	chr4	24534486:24534677:24538673:24538796:24541730:24541922,	24538674	24538796	24538677	24538677	Nonsense_Mutation	G	A	p.Q636*
UCEC	TCGA-D1-A15X-01	TBC1D1	ENST00000261439.4,ENST00000511238.1,ENST00000510573.2	chr4	38104668:38104778:38117330:38117575:38119653:38119813,	38117331	38117575	38117333	38117333	Nonsense_Mutation	C	T	p.R854*
UCEC	TCGA-B5-A0JY-01	RFC1	ENST00000381897.1,ENST00000418436.1,ENST00000349703.2	chr4	39322084:39322289:39322906:39322994:39324959:39325037,	39322907	39322994	39322970	39322970	Nonsense_Mutation	C	A	p.E249*
UCEC	TCGA-AX-A0J0-01	UGDH	ENST00000501493.2	chr4	39515702:39515804:39522970:39523139:39529418:39529853,39515712:39515804:39522970:39523139:39528902:39529057,	39522971	39523139	39523018	39523018	Nonsense_Mutation	C	A	p.E39*
UCEC	TCGA-AX-A0J0-01	UGDH	ENST00000509391.1	chr4	39515712:39515804:39522970:39523164:39528902:39529057,	39522971	39523164	39523018	39523018	Nonsense_Mutation	C	A	p.E39*
UCEC	TCGA-D1-A17Q-01	PDS5A	ENST00000303538.8,ENST00000507766.1	chr4	39843567:39843676:39846275:39846421:39847437:39847500,	39846276	39846421	39846283	39846283	Nonsense_Mutation	G	A	p.R1181*
UCEC	TCGA-BS-A0UF-01	N4BP2	ENST00000511480.1	chr4	40075074:40075171:40098846:40099189:40103694:40103994,40075074:40075171:40098846:40099189:40101655:40101746,	40098847	40099189	40099126	40099126	Nonsense_Mutation	G	T	p.E56*
UCEC	TCGA-AP-A059-01	N4BP2	ENST00000513269.1,ENST00000261435.6,ENST00000511480.1	chr4	40121551:40123929:40124746:40124832:40125779:40125825,	40124747	40124832	40124821	40124821	Nonsense_Mutation	G	T	p.E1425*
UCEC	TCGA-AP-A0LM-01	RBM47	ENST00000510871.1	chr4	40434725:40434879:40438457:40438902:40439787:40440814,	40438458	40438902	40438530	40438530	Nonsense_Mutation	C	A	p.E420*
UCEC	TCGA-AP-A0LM-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000514014.1	chr4	40434725:40434879:40438457:40438664:40439787:40440814,	40438458	40438664	40438530	40438530	Nonsense_Mutation	C	A	p.E420*
UCEC	TCGA-BS-A0UJ-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40440109	40440109	Nonsense_Mutation	G	A	p.Q268*
UCEC	TCGA-AX-A05Z-01	NSUN7	ENST00000381782.2,ENST00000316607.5	chr4	40778091:40778276:40792618:40792762:40796391:40796493,	40792619	40792762	40792738	40792738	Nonsense_Mutation	G	T	p.E386*
UCEC	TCGA-BS-A0TC-01	NSUN7	ENST00000381782.2,ENST00000316607.5	chr4	40778091:40778276:40792618:40792762:40796391:40796493,	40792619	40792762	40792753	40792753	Nonsense_Mutation	G	T	p.E391*
UCEC	TCGA-A5-A0GH-01	APBB2	ENST00000513140.1	chr4	40825684:40825776:40827903:40827984:40829148:40829236,	40827904	40827984	40827978	40827978	Nonsense_Mutation	G	A	p.Q118*
UCEC	TCGA-A5-A0GH-01	APBB2	ENST00000543538.1,ENST00000510670.1,ENST00000506352.1,ENST00000507831.1,ENST00000512510.1,ENST00000295974.8,ENST00000514920.1,ENST00000513611.1,ENST00000510925.1,ENST00000513516.1,ENST00000504305.1,ENST00000508593.1,ENST00000502841.1	chr4	40825684:40825776:40827903:40827987:40829148:40829236,	40827904	40827987	40827978	40827978	Nonsense_Mutation	G	A	p.Q118*
UCEC	TCGA-AX-A0J0-01	GNPDA2	ENST00000507917.1,ENST00000295448.3,ENST00000509756.1,ENST00000507534.1	chr4	44709768:44709943:44712969:44713154:44719129:44719312,	44712970	44713154	44712972	44712972	Nonsense_Mutation	C	A	p.E198*
UCEC	TCGA-AX-A05Z-01	GABRA2	ENST00000381620.4,ENST00000514090.1,ENST00000356504.1,ENST00000515082.1,ENST00000540012.1,ENST00000507069.1,ENST00000510861.1	chr4	46263942:46264145:46305476:46305629:46307584:46307594,	46305477	46305629	46305504	46305504	Nonsense_Mutation	C	A	p.E277*
UCEC	TCGA-BS-A0UV-01	GABRA2	ENST00000381620.4,ENST00000514090.1,ENST00000356504.1,ENST00000515082.1,ENST00000540012.1,ENST00000507069.1,ENST00000510861.1	chr4	46263942:46264145:46305476:46305629:46307584:46307594,	46305477	46305629	46305504	46305504	Nonsense_Mutation	C	A	p.E277*
UCEC	TCGA-BS-A0UF-01	COMMD8	ENST00000381571.4	chr4	47452884:47453682:47455075:47455231:47458593:47458746,	47455076	47455231	47455162	47455162	Nonsense_Mutation	C	A	p.E149*
UCEC	TCGA-B5-A11E-01	ATP10D	ENST00000504445.1,ENST00000273859.3	chr4	47527573:47527659:47537525:47537632:47537918:47538050,	47537526	47537632	47537563	47537563	Nonsense_Mutation	G	T	p.E272*
UCEC	TCGA-D1-A15X-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000513401.1,ENST00000514617.1,ENST00000507873.2	chr4	48541987:48542085:48542369:48542977:48544043:48544138,	48542370	48542977	48542817	48542817	Nonsense_Mutation	G	A	p.R1950*
UCEC	TCGA-AX-A05Z-01	OCIAD2	ENST00000510159.1	chr4	48899857:48899874:48901845:48901942:48906500:48906628,48899820:48899852:48901845:48901942:48906500:48906628,	48901846	48901942	48901864	48901864	Nonsense_Mutation	C	A	p.E49*
UCEC	TCGA-BS-A0UV-01	CWH43	ENST00000514053.2	chr4	48988329:48988489:48990493:48990685:48993470:48993591,	48990494	48990685	48990562	48990562	Nonsense_Mutation	G	T	p.E38*
UCEC	TCGA-D1-A17Q-01	CWH43	ENST00000513409.1,ENST00000226432.4	chr4	49000476:49000565:49005751:49006009:49009217:49009343,	49005752	49006009	49005925	49005925	Nonsense_Mutation	G	T	p.E326*
UCEC	TCGA-D1-A16X-01	EXOC1	ENST00000349598.6	chr4	56744082:56744232:56749988:56750094:56756388:56756552,	56749989	56750094	56750025	56750025	Nonsense_Mutation	G	T	p.E421*
UCEC	TCGA-D1-A17Q-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56837435:56837574:56840911:56841135:56846308:56846461,	56840912	56841135	56841103	56841103	Nonsense_Mutation	G	T	p.E481*
UCEC	TCGA-BS-A0UV-01	PAICS	ENST00000264221.2,ENST00000505164.1,ENST00000512576.1,ENST00000514888.1,ENST00000399688.3	chr4	57314583:57314763:57314875:57314989:57316784:57316868,	57314876	57314989	57314966	57314966	Nonsense_Mutation	C	T	p.R229*
UCEC	TCGA-B5-A0JY-01	POLR2B	ENST00000441246.2,ENST00000381227.1,ENST00000314595.5	chr4	57852519:57852592:57856913:57857064:57860569:57860682,	57856914	57857064	57857059	57857059	Nonsense_Mutation	G	T	p.E80*
UCEC	TCGA-D1-A103-01	POLR2B	ENST00000441246.2,ENST00000478188.1,ENST00000381227.1,ENST00000314595.5,ENST00000431623.2	chr4	57887064:57887161:57888317:57888412:57889495:57889746,	57888318	57888412	57888373	57888373	Nonsense_Mutation	G	T	p.E826*
UCEC	TCGA-AX-A05Z-01	POLR2B	ENST00000441246.2,ENST00000478188.1,ENST00000381227.1,ENST00000314595.5,ENST00000431623.2	chr4	57887064:57887161:57888317:57888412:57889495:57889746,	57888318	57888412	57888376	57888376	Nonsense_Mutation	G	T	p.E827*
UCEC	TCGA-B5-A11E-01	TMPRSS11A	ENST00000513536.1	chr4	68797710:68797778:68810236:68810313:68812167:68812282,	68810237	68810313	68810272	68810272	Nonsense_Mutation	G	A	p.Q73*
UCEC	TCGA-B5-A11E-01	TMPRSS11A	ENST00000334830.7	chr4	68797710:68797778:68810227:68810355:68812167:68812282,	68810228	68810355	68810272	68810272	Nonsense_Mutation	G	A	p.Q73*
UCEC	TCGA-B5-A11E-01	TMPRSS11A	ENST00000508048.1,ENST00000396188.2	chr4	68797710:68797778:68810236:68810355:68812167:68812282,	68810237	68810355	68810272	68810272	Nonsense_Mutation	G	A	p.Q73*
UCEC	TCGA-D1-A17Q-01	RUFY3	ENST00000504805.2	chr4	71655211:71655309:71659481:71659621:71660511:71660611,	71659482	71659621	71659518	71659518	Nonsense_Mutation	C	T	p.R452*
UCEC	TCGA-D1-A17Q-01	RUFY3	ENST00000381006.3,ENST00000502653.1	chr4	71655211:71655309:71659501:71659621:71660511:71660611,	71659502	71659621	71659518	71659518	Nonsense_Mutation	C	T	p.R452*
UCEC	TCGA-B5-A11E-01	COX18	ENST00000510031.1	chr4	73930966:73931130:73933745:73933850:73935033:73935409,	73933746	73933850	73933815	73933815	Nonsense_Mutation	A	C	p.Y123*
UCEC	TCGA-B5-A11E-01	COX18	ENST00000507544.2	chr4	73930966:73931130:73933745:73933846:73935033:73935409,	73933746	73933846	73933815	73933815	Nonsense_Mutation	A	C	p.Y123*
UCEC	TCGA-B5-A0JY-01	ANKRD17	ENST00000558247.1,ENST00000561029.1	chr4	74000833:74000982:74005247:74006000:74007457:74007509,74000833:74000979:74005247:74006000:74007457:74007509,	74005248	74006000	74005854	74005854	Nonsense_Mutation	C	A	p.E827*
UCEC	TCGA-BS-A0UF-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000509063.1,ENST00000441319.1	chr4	74272367:74272478:74274310:74274522:74275071:74275204,	74274311	74274522	74274452	74274452	Nonsense_Mutation	C	T	p.R138*
UCEC	TCGA-AX-A0J0-01	MTHFD2L	ENST00000395759.2,ENST00000461856.1,ENST00000492183.1,ENST00000325278.6	chr4	75091018:75091111:75147141:75147267:75167413:75167707,	75147142	75147267	75147244	75147244	Nonsense_Mutation	T	G	p.L303*
UCEC	TCGA-AP-A0LM-01	EPGN	ENST00000505212.1,ENST00000514968.1,ENST00000332112.4	chr4	75174250:75174293:75174809:75174872:75177901:75178022,	75174810	75174872	75174830	75174830	Nonsense_Mutation	G	T	p.E22*
UCEC	TCGA-AP-A0LM-01	EPGN	ENST00000503098.1,ENST00000502835.1,ENST00000502358.1	chr4	75174250:75174293:75174809:75174899:75177901:75178022,	75174810	75174899	75174830	75174830	Nonsense_Mutation	G	T	p.E22*
UCEC	TCGA-AP-A059-01	USO1	ENST00000441296.2,ENST00000264904.6,ENST00000514213.2,ENST00000538159.1	chr4	76731584:76731692:76733312:76733528:76734358:76734448,	76733313	76733528	76733490	76733490	Nonsense_Mutation	C	A	p.Y596*
UCEC	TCGA-AX-A0J1-01	NAAA	ENST00000507956.1,ENST00000513045.1,ENST00000505594.1,ENST00000399497.3,ENST00000602782.1,ENST00000286733.4	chr4	76841890:76841953:76842103:76842276:76846887:76846964,	76842104	76842276	76842143	76842143	Nonsense_Mutation	C	T	p.W71*
UCEC	TCGA-AP-A0LM-01	SDAD1	ENST00000395711.4,ENST00000395710.1,ENST00000356260.5	chr4	76878999:76879094:76881218:76881345:76882180:76882257,	76881219	76881345	76881240	76881240	Nonsense_Mutation	C	A	p.E488*
UCEC	TCGA-BS-A0TC-01	SDAD1	ENST00000395711.4,ENST00000395710.1,ENST00000356260.5	chr4	76878999:76879094:76881218:76881345:76882180:76882257,	76881219	76881345	76881297	76881297	Nonsense_Mutation	C	A	p.E469*
UCEC	TCGA-B5-A11Y-01	NUP54	ENST00000458189.2,ENST00000512151.1,ENST00000264883.3,ENST00000502850.1,ENST00000514987.1	chr4	77045801:77045909:77051808:77051902:77052382:77052437,	77051809	77051902	77051862	77051862	Nonsense_Mutation	G	A	p.R335*
UCEC	TCGA-AP-A056-01	NUP54	ENST00000264883.3,ENST00000514987.1,ENST00000342467.6	chr4	77053675:77053872:77055327:77055515:77065301:77065445,77053675:77053872:77055327:77055515:77057338:77057565,	77055328	77055515	77055443	77055443	Nonsense_Mutation	C	A	p.E199*
UCEC	TCGA-D1-A16Y-01	NUP54	ENST00000264883.3,ENST00000514987.1,ENST00000342467.6	chr4	77053675:77053872:77055327:77055515:77065301:77065445,77053675:77053872:77055327:77055515:77057338:77057565,	77055328	77055515	77055443	77055443	Nonsense_Mutation	C	A	p.E199*
UCEC	TCGA-B5-A0JY-01	CCDC158	ENST00000504667.1,ENST00000388914.3	chr4	77276476:77276589:77278526:77278679:77283278:77283468,	77278527	77278679	77278635	77278635	Nonsense_Mutation	C	A	p.E689*
UCEC	TCGA-AX-A0J0-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77304814:77304891:77305240:77305568:77305708:77305818,	77305241	77305568	77305285	77305285	Nonsense_Mutation	C	A	p.E228*
UCEC	TCGA-D1-A17Q-01	MRPL1	ENST00000315567.8,ENST00000511521.1	chr4	78792897:78793009:78804395:78804654:78806409:78806472,	78804396	78804654	78804444	78804444	Nonsense_Mutation	G	T	p.E18*
UCEC	TCGA-D1-A17Q-01	MRPL1	ENST00000315567.8,ENST00000511521.1	chr4	78792897:78793009:78804395:78804654:78806409:78806472,	78804396	78804654	78804460	78804460	Nonsense_Mutation	G	T	p.E70*
UCEC	TCGA-BS-A0TC-01	MRPL1	ENST00000315567.8,ENST00000511521.1	chr4	78792897:78793009:78804395:78804654:78806409:78806472,	78804396	78804654	78804651	78804651	Nonsense_Mutation	G	T	p.E87*
UCEC	TCGA-BS-A0UF-01	ANXA3	ENST00000503570.2,ENST00000505805.1,ENST00000264908.6,ENST00000512884.1	chr4	79522663:79522722:79525430:79525553:79531209:79531517,	79525431	79525553	79525503	79525503	Nonsense_Mutation	C	T	p.R288*
UCEC	TCGA-BS-A0UF-01	SEC31A	ENST00000443462.2,ENST00000513858.1,ENST00000432794.1,ENST00000348405.4,ENST00000311785.7,ENST00000500777.2,ENST00000509142.1,ENST00000326950.5,ENST00000505984.1,ENST00000505472.1,ENST00000448323.1,ENST00000508502.1,ENST00000355196.2,ENST00000436790.2,ENST00000508479.1,ENST00000395310.2	chr4	83791477:83791577:83793096:83793239:83795763:83795904,	83793097	83793239	83793140	83793140	Nonsense_Mutation	G	A	p.R247*
UCEC	TCGA-B5-A11H-01	LIN54	ENST00000510557.1,ENST00000446851.2,ENST00000508171.1,ENST00000506560.1,ENST00000442461.2,ENST00000340417.3,ENST00000505397.1,ENST00000395282.2,ENST00000395283.2,ENST00000510877.1	chr4	83852095:83852298:83857133:83857271:83857431:83857534,	83857134	83857271	83857172	83857172	Nonsense_Mutation	G	A	p.R603*
UCEC	TCGA-AX-A05Z-01	LIN54	ENST00000510557.1,ENST00000446851.2,ENST00000508171.1,ENST00000506560.1,ENST00000442461.2,ENST00000340417.3,ENST00000505397.1,ENST00000395282.2,ENST00000395283.2,ENST00000510877.1	chr4	83852095:83852298:83857133:83857271:83857431:83857534,	83857134	83857271	83857202	83857202	Nonsense_Mutation	G	A	p.R593*
UCEC	TCGA-AX-A0J0-01	HELQ	ENST00000508591.1,ENST00000295488.3,ENST00000510985.1	chr4	84337883:84338018:84339245:84339359:84342715:84342825,	84339246	84339359	84339284	84339284	Nonsense_Mutation	C	A	p.E1009*
UCEC	TCGA-AX-A05Z-01	HELQ	ENST00000508591.1,ENST00000295488.3,ENST00000510985.1	chr4	84347146:84347245:84348715:84348873:84350676:84350899,	84348716	84348873	84348753	84348753	Nonsense_Mutation	G	T	p.S880*
UCEC	TCGA-BS-A0UF-01	WDFY3	ENST00000514711.1,ENST00000295888.4,ENST00000322366.6	chr4	85617884:85617976:85623505:85623659:85625490:85625597,	85623506	85623659	85623569	85623569	Nonsense_Mutation	C	A	p.E2845*
UCEC	TCGA-AP-A051-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87614739:87614827:87622393:87622954:87637682:87637778,	87622394	87622954	87622954	87622954	Nonsense_Mutation	G	T	p.E399*
UCEC	TCGA-AP-A056-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87688969:87689129:87690921:87691136:87691253:87691352,	87690922	87691136	87690981	87690981	Nonsense_Mutation	C	T	p.R1522*
UCEC	TCGA-D1-A17Q-01	AFF1	ENST00000395146.4,ENST00000544085.1,ENST00000307808.6	chr4	88026959:88026997:88029310:88029467:88035518:88036451,	88029311	88029467	88029435	88029435	Nonsense_Mutation	G	T	p.E494*
UCEC	TCGA-D1-A15X-01	HSD17B11	ENST00000358290.4	chr4	88293860:88293967:88295850:88295982:88303406:88303514,	88295851	88295982	88295926	88295926	Nonsense_Mutation	A	T	p.Y125*
UCEC	TCGA-B5-A0JY-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89042786:89042944:89052212:89052365:89052954:89053069,	89052213	89052365	89052332	89052332	Nonsense_Mutation	C	A	p.E138*
UCEC	TCGA-B5-A0JY-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000506714.1	chr4	89300215:89300272:89304372:89304532:89306650:89306727,	89304373	89304532	89304513	89304513	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-B5-A0JY-01	HERC6	ENST00000504905.1	chr4	89300215:89300272:89304383:89304532:89306650:89306727,	89304384	89304532	89304513	89304513	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-B5-A0JY-01	HERC6	ENST00000502870.1	chr4	89300215:89300272:89304336:89304532:89306650:89306727,	89304337	89304532	89304513	89304513	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-AP-A0LM-01	HERC6	ENST00000264346.7	chr4	89345746:89345854:89349731:89349902:89352313:89352457,	89349732	89349902	89349828	89349828	Nonsense_Mutation	C	T	p.R678*
UCEC	TCGA-AP-A051-01	SMARCAD1	ENST00000457823.2,ENST00000359052.4,ENST00000354268.4,ENST00000510105.1	chr4	95129496:95129735:95147269:95147447:95155104:95155273,	95147270	95147447	95147397	95147397	Nonsense_Mutation	C	A	p.C106*
UCEC	TCGA-AP-A056-01	RAP1GDS1	ENST00000408927.3,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000408900.3	chr4	99313102:99313231:99325627:99325753:99337895:99338039,	99325628	99325753	99325714	99325714	Nonsense_Mutation	G	T	p.E243*
UCEC	TCGA-AX-A05Z-01	PPP3CA	ENST00000394854.3,ENST00000394853.4,ENST00000323055.6	chr4	102030110:102030235:102117072:102117273:102267895:102267953,	102117073	102117273	102117235	102117235	Nonsense_Mutation	C	A	p.E33*
UCEC	TCGA-D1-A17Q-01	SLC9B1	ENST00000510243.1,ENST00000503584.1	chr4	103853280:103853456:103910956:103911098:103912799:103912869,	103910957	103911098	103911065	103911065	Nonsense_Mutation	C	A	p.E35*
UCEC	TCGA-BS-A0UV-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104044027:104044246:104053849:104054053:104054851:104055049,	104053850	104054053	104053975	104053975	Nonsense_Mutation	C	A	p.E2267*
UCEC	TCGA-AX-A05Z-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155340	106155340	Nonsense_Mutation	G	T	p.E81*
UCEC	TCGA-A5-A0VP-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156729	106156729	Nonsense_Mutation	C	T	p.R544*
UCEC	TCGA-AP-A056-01	PPA2	ENST00000508518.1,ENST00000380004.2	chr4	106345405:106345479:106367539:106367659:106370506:106370528,106359171:106359193:106367539:106367659:106370506:106370528,106359171:106359193:106367539:106367659:106374754:106374799,	106367540	106367659	106367639	106367639	Nonsense_Mutation	C	A	p.E15*
UCEC	TCGA-AP-A0LM-01	LEF1	ENST00000265165.1,ENST00000506680.1,ENST00000504950.1	chr4	109000647:109000770:109002741:109002825:109004511:109004569,	109002742	109002825	109002824	109002824	Nonsense_Mutation	G	A	p.Q214*
UCEC	TCGA-D1-A16Y-01	SEC24B	ENST00000265175.5,ENST00000504968.2,ENST00000399100.2	chr4	110433112:110433239:110434902:110435012:110437683:110437796,	110434903	110435012	110434911	110434911	Nonsense_Mutation	G	T	p.E638*
UCEC	TCGA-BS-A0TC-01	CFI	ENST00000512148.1	chr4	110670654:110670758:110673623:110673659:110681425:110681536,	110673624	110673659	110673657	110673657	Nonsense_Mutation	C	A	p.E303*
UCEC	TCGA-AX-A05Z-01	EGF	ENST00000503392.1,ENST00000265171.5,ENST00000509793.1,ENST00000537316.1	chr4	110925660:110925778:110929307:110929386:110932357:110932464,	110929308	110929386	110929323	110929323	Nonsense_Mutation	G	T	p.E1103*
UCEC	TCGA-BS-A0UF-01	EGF	ENST00000503392.1,ENST00000265171.5,ENST00000509793.1,ENST00000537316.1	chr4	110925660:110925778:110929307:110929386:110932357:110932464,	110929308	110929386	110929323	110929323	Nonsense_Mutation	G	T	p.E1103*
UCEC	TCGA-B5-A11E-01	ELOVL6	ENST00000302274.3,ENST00000506625.1,ENST00000394607.3	chr4	110972881:110972918:110980758:110980910:111026652:111026784,	110980759	110980910	110980894	110980894	Nonsense_Mutation	G	A	p.R80*
UCEC	TCGA-B5-A11E-01	ENPEP	ENST00000265162.5	chr4	111412188:111412320:111427792:111427913:111430808:111430963,	111427793	111427913	111427817	111427817	Nonsense_Mutation	C	T	p.Q315*
UCEC	TCGA-AP-A0LM-01	AP1AR	ENST00000274000.5	chr4	113181921:113182018:113186164:113186223:113186889:113186963,113184143:113184242:113186164:113186223:113186889:113186963,	113186165	113186223	113186168	113186168	Nonsense_Mutation	G	T	p.E129*
UCEC	TCGA-BS-A0UV-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275124	114275124	Nonsense_Mutation	C	T	p.R1784*
UCEC	TCGA-AX-A0J0-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277614	114277614	Nonsense_Mutation	G	T	p.E2614*
UCEC	TCGA-D1-A17Q-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277614	114277614	Nonsense_Mutation	G	T	p.E2614*
UCEC	TCGA-B5-A11E-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277836	114277836	Nonsense_Mutation	C	T	p.R2688*
UCEC	TCGA-AP-A056-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278727	114278727	Nonsense_Mutation	G	T	p.E2985*
UCEC	TCGA-AP-A0LM-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114279996	114279996	Nonsense_Mutation	C	T	p.R3408*
UCEC	TCGA-D1-A103-01	CAMK2D	ENST00000505990.1,ENST00000394522.3,ENST00000394526.2,ENST00000379773.2,ENST00000514328.1,ENST00000515496.1,ENST00000342666.5,ENST00000454265.2,ENST00000508738.1,ENST00000429180.1,ENST00000296402.5,ENST00000511664.1,ENST00000418639.2	chr4	114582868:114582928:114680475:114680570:114682159:114682224,	114680476	114680570	114680521	114680521	Nonsense_Mutation	C	A	p.E39*
UCEC	TCGA-AX-A0J1-01	METTL14	ENST00000506780.1,ENST00000388822.5	chr4	119625089:119625206:119626765:119626976:119631152:119631401,	119626766	119626976	119626970	119626970	Nonsense_Mutation	C	T	p.R354*
UCEC	TCGA-A5-A0GP-01	SYNPO2	ENST00000434046.2,ENST00000307142.4,ENST00000504178.1,ENST00000429713.2	chr4	119944625:119944736:119947781:119948593:119950999:119953008,	119947782	119948593	119947885	119947885	Nonsense_Mutation	C	T	p.R121*
UCEC	TCGA-BS-A0UV-01	SYNPO2	ENST00000434046.2,ENST00000307142.4,ENST00000504178.1,ENST00000429713.2	chr4	119944625:119944736:119947781:119948593:119950999:119953008,	119947782	119948593	119947992	119947992	Nonsense_Mutation	G	T	p.E108*
UCEC	TCGA-D1-A16X-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120192462	120192462	Nonsense_Mutation	G	T	p.E483*
UCEC	TCGA-AP-A056-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120193173	120193173	Nonsense_Mutation	G	T	p.E720*
UCEC	TCGA-AX-A0J0-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120193173	120193173	Nonsense_Mutation	G	T	p.E720*
UCEC	TCGA-B5-A11E-01	MAD2L1	ENST00000333047.5	chr4	120982028:120982132:120986826:120986973:120987816:120987976,	120986827	120986973	120986914	120986914	Nonsense_Mutation	G	A	p.R45*
UCEC	TCGA-AP-A054-01	PRDM5	ENST00000506065.1,ENST00000264808.3,ENST00000428209.2	chr4	121616312:121616430:121631463:121631568:121698342:121698436,121616312:121616430:121631463:121631568:121675707:121675793,	121631464	121631568	121631520	121631520	Nonsense_Mutation	G	A	p.R558*
UCEC	TCGA-BS-A0UV-01	ANXA5	ENST00000509648.1,ENST00000296511.5,ENST00000506395.1,ENST00000515017.1,ENST00000501272.2	chr4	122589400:122589682:122590756:122590879:122591108:122591131,	122590757	122590879	122590879	122590879	Nonsense_Mutation	C	A	p.G261*
UCEC	TCGA-BS-A0UV-01	EXOSC9	ENST00000379663.3,ENST00000512454.1,ENST00000243498.5,ENST00000509980.1	chr4	122731140:122731254:122732737:122732826:122734388:122734448,	122732738	122732826	122732753	122732753	Nonsense_Mutation	A	T	p.K252*
UCEC	TCGA-AX-A05Z-01	EXOSC9	ENST00000379663.3,ENST00000513654.1,ENST00000512454.1,ENST00000243498.5,ENST00000509980.1	chr4	122732737:122732826:122734388:122734535:122735020:122735202,	122734389	122734535	122734501	122734501	Nonsense_Mutation	G	T	p.E314*
UCEC	TCGA-AP-A056-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000446180.1,ENST00000388738.3	chr4	123164152:123164223:123165008:123165182:123166174:123166295,	123165009	123165182	123165058	123165058	Nonsense_Mutation	G	T	p.E1598*
UCEC	TCGA-AP-A056-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123900386:123900541:123949340:123949550:123977541:123977595,	123949341	123949550	123949434	123949434	Nonsense_Mutation	C	T	p.R655*
UCEC	TCGA-AX-A05Z-01	INTU	ENST00000503626.1,ENST00000503952.1,ENST00000335251.6	chr4	128627958:128628124:128629725:128629823:128632067:128632257,	128629726	128629823	128629737	128629737	Nonsense_Mutation	G	T	p.E60*
UCEC	TCGA-BS-A0UF-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000354456.3	chr4	129035724:129035897:129042980:129043343:129083348:129083472,	129042981	129043343	129043089	129043089	Nonsense_Mutation	C	T	p.R424*
UCEC	TCGA-AP-A056-01	NAA15	ENST00000296543.5	chr4	140299909:140300008:140305985:140306132:140307286:140307384,	140305986	140306132	140306112	140306112	Nonsense_Mutation	C	A	p.S761*
UCEC	TCGA-AP-A056-01	NAA15	ENST00000398947.1	chr4	140299909:140300008:140305988:140306132:140307286:140307384,	140305989	140306132	140306112	140306112	Nonsense_Mutation	C	A	p.S761*
UCEC	TCGA-D1-A17Q-01	CLGN	ENST00000325617.5,ENST00000414773.1,ENST00000537281.1	chr4	141309911:141310458:141311781:141311882:141313372:141313532,	141311782	141311882	141311792	141311792	Nonsense_Mutation	G	T	p.S581*
UCEC	TCGA-AX-A0J0-01	USP38	ENST00000307017.4,ENST00000511739.1,ENST00000510377.1	chr4	144127185:144127379:144130716:144130810:144133470:144133577,	144130717	144130810	144130761	144130761	Nonsense_Mutation	C	A	p.S483*
UCEC	TCGA-BS-A0UF-01	SMARCA5	ENST00000283131.3	chr4	144466622:144466736:144467077:144467200:144467928:144468061,	144467078	144467200	144467183	144467183	Nonsense_Mutation	G	T	p.E835*
UCEC	TCGA-AP-A056-01	OTUD4	ENST00000454497.2,ENST00000455611.2,ENST00000514973.1,ENST00000447906.2	chr4	146071953:146072057:146073692:146073787:146076562:146076627,	146073693	146073787	146073706	146073706	Nonsense_Mutation	C	A	p.E254*
UCEC	TCGA-BS-A0UF-01	OTUD4	ENST00000505976.1,ENST00000447906.2	chr4	146092821:146092872:146095812:146095896:146100966:146101080,	146095813	146095896	146095839	146095839	Nonsense_Mutation	G	A	p.R8*
UCEC	TCGA-AP-A0LM-01	ARHGAP10	ENST00000510379.1,ENST00000336498.3	chr4	148744081:148744108:148768301:148768373:148778703:148778805,	148768302	148768373	148768338	148768338	Nonsense_Mutation	G	T	p.E117*
UCEC	TCGA-AX-A05Z-01	DCLK2	ENST00000411937.2,ENST00000506325.1,ENST00000302176.8	chr4	151000179:151000600:151023629:151023964:151114289:151114392,	151023630	151023964	151023773	151023773	Nonsense_Mutation	G	T	p.E189*
UCEC	TCGA-AX-A0J0-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151246960:151247050:151271143:151271311:151336589:151336742,	151271144	151271311	151271169	151271169	Nonsense_Mutation	G	T	p.S2457*
UCEC	TCGA-AP-A056-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152053482:152053535:152054185:152054388:152056225:152056284,	152054186	152054388	152054264	152054264	Nonsense_Mutation	G	A	p.R614*
UCEC	TCGA-B5-A11E-01	ARFIP1	ENST00000405727.2	chr4	153701260:153701378:153750776:153750878:153784757:153784866,153701144:153701243:153750776:153750878:153784757:153784866,	153750777	153750878	153750843	153750843	Nonsense_Mutation	G	T	p.E20*
UCEC	TCGA-AX-A05Z-01	MND1	ENST00000509752.1,ENST00000240488.3,ENST00000504860.1	chr4	154315413:154315488:154318370:154318485:154330122:154330167,	154318371	154318485	154318479	154318479	Nonsense_Mutation	G	T	p.E154*
UCEC	TCGA-AP-A0LM-01	PLRG1	ENST00000499023.2,ENST00000393905.2,ENST00000302078.5,ENST00000506627.1	chr4	155457770:155457896:155458437:155458631:155459120:155459234,	155458438	155458631	155458497	155458497	Nonsense_Mutation	G	A	p.R476*
UCEC	TCGA-D1-A17Q-01	FGB	ENST00000509493.1,ENST00000302068.4	chr4	155490342:155490459:155490665:155490951:155491570:155491951,	155490666	155490951	155490734	155490734	Nonsense_Mutation	G	T	p.E343*
UCEC	TCGA-B5-A0JY-01	FGG	ENST00000443553.1,ENST00000404648.3,ENST00000336098.3,ENST00000393846.2	chr4	155530781:155530915:155531218:155531349:155532956:155533050,	155531219	155531349	155531339	155531339	Nonsense_Mutation	C	A	p.E138*
UCEC	TCGA-AP-A0LM-01	ETFDH	ENST00000307738.5,ENST00000506422.1,ENST00000511912.1	chr4	159624574:159624743:159627340:159627523:159627780:159628002,	159627341	159627523	159627394	159627394	Nonsense_Mutation	G	T	p.E447*
UCEC	TCGA-AX-A0J0-01	ANXA10	ENST00000359299.3,ENST00000507278.1	chr4	169100367:169100463:169102833:169102892:169105709:169105832,	169102834	169102892	169102845	169102845	Nonsense_Mutation	C	T	p.R246*
UCEC	TCGA-B5-A0JY-01	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169354160:169354266:169362487:169362643:169369788:169369930,	169362488	169362643	169362566	169362566	Nonsense_Mutation	C	A	p.E406*
UCEC	TCGA-B5-A0JY-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170359233:170359410:170384393:170384546:170398274:170398503,	170384394	170384546	170384532	170384532	Nonsense_Mutation	C	A	p.E789*
UCEC	TCGA-B5-A11N-01	CLCN3	ENST00000507875.1,ENST00000513761.1,ENST00000347613.4,ENST00000504131.2,ENST00000360642.3	chr4	170625148:170625335:170628018:170628417:170634229:170634338,	170628019	170628417	170628207	170628207	Nonsense_Mutation	G	T	p.E647*
UCEC	TCGA-AP-A0LM-01	MFAP3L	ENST00000361618.3	chr4	170913315:170913460:170926730:170927161:170947384:170947446,	170926731	170927161	170927022	170927022	Nonsense_Mutation	G	A	p.R3*
UCEC	TCGA-AX-A05Z-01	GALNT7	ENST00000265000.4,ENST00000505308.1,ENST00000503213.1	chr4	174225169:174225269:174235108:174235327:174238784:174238883,	174235109	174235327	174235223	174235223	Nonsense_Mutation	C	T	p.R502*
UCEC	TCGA-D1-A17Q-01	SAP30	ENST00000296504.3	chr4	174292093:174292648:174294540:174294666:174295089:174295188,	174294541	174294666	174294638	174294638	Nonsense_Mutation	C	A	p.S138*
UCEC	TCGA-A5-A0GP-01	ASB5	ENST00000512254.1,ENST00000296525.3	chr4	177137968:177138160:177142305:177142440:177142600:177142751,	177142306	177142440	177142387	177142387	Nonsense_Mutation	C	A	p.E197*
UCEC	TCGA-AP-A0LM-01	VEGFC	ENST00000280193.2	chr4	177608974:177609081:177632652:177632804:177648931:177649001,	177632653	177632804	177632699	177632699	Nonsense_Mutation	G	A	p.Q220*
UCEC	TCGA-AX-A0J0-01	TRAPPC11	ENST00000357207.4,ENST00000512476.1,ENST00000334690.6,ENST00000505676.1,ENST00000511955.1	chr4	184626131:184626223:184627959:184628093:184629559:184629569,	184627960	184628093	184627969	184627969	Nonsense_Mutation	C	A	p.S1022*
UCEC	TCGA-D1-A103-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184931234	184931234	Nonsense_Mutation	G	T	p.E415*
UCEC	TCGA-AX-A0J0-01	ACSL1	ENST00000281455.2,ENST00000504900.1,ENST00000507295.1	chr4	185709770:185709885:185724473:185724700:185747069:185747188,	185724474	185724700	185724638	185724638	Nonsense_Mutation	G	A	p.R11*
UCEC	TCGA-AX-A05Z-01	ACSL1	ENST00000281455.2,ENST00000504900.1,ENST00000507295.1	chr4	185709770:185709885:185724473:185724700:185747069:185747188,	185724474	185724700	185724638	185724638	Nonsense_Mutation	G	A	p.R11*
UCEC	TCGA-D1-A103-01	UFSP2	ENST00000511485.1	chr4	186329089:186329214:186329424:186329544:186334879:186334896,	186329425	186329544	186329436	186329436	Nonsense_Mutation	C	A	p.E329*
UCEC	TCGA-D1-A103-01	UFSP2	ENST00000514247.1,ENST00000509180.1,ENST00000510755.1,ENST00000264689.6	chr4	186329089:186329214:186329424:186329589:186334879:186334896,	186329425	186329589	186329436	186329436	Nonsense_Mutation	C	A	p.E329*
UCEC	TCGA-BS-A0UF-01	UFSP2	ENST00000511485.1	chr4	186329089:186329214:186329424:186329544:186334879:186334896,	186329425	186329544	186329436	186329436	Nonsense_Mutation	C	A	p.E329*
UCEC	TCGA-BS-A0UF-01	UFSP2	ENST00000514247.1,ENST00000509180.1,ENST00000510755.1,ENST00000264689.6	chr4	186329089:186329214:186329424:186329589:186334879:186334896,	186329425	186329589	186329436	186329436	Nonsense_Mutation	C	A	p.E329*
UCEC	TCGA-AX-A05Z-01	CCDC110	ENST00000507501.1,ENST00000510617.1,ENST00000307588.3,ENST00000510481.1,ENST00000506962.1	chr4	186381185:186381392:186382202:186382313:186383796:186383862,	186382203	186382313	186382295	186382295	Nonsense_Mutation	C	A	p.E86*
UCEC	TCGA-B5-A0JY-01	PDLIM3	ENST00000505886.1,ENST00000284771.6	chr4	186425698:186425740:186427675:186427806:186434710:186438871,186425698:186425740:186427675:186427806:186435856:186436044,	186427676	186427806	186427697	186427697	Nonsense_Mutation	C	A	p.G258*
UCEC	TCGA-B5-A11J-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186544809	186544809	Nonsense_Mutation	G	A	p.Q588*
UCEC	TCGA-B5-A11E-01	SORBS2	ENST00000445625.1	chr4	186556508:186556565:186560030:186560189:186567821:186567936,186551702:186551737:186560030:186560189:186567821:186567936,	186560031	186560189	186560170	186560170	Nonsense_Mutation	G	A	p.R133*
UCEC	TCGA-AX-A05Z-01	KLKB1	ENST00000511608.1,ENST00000264690.6,ENST00000511406.1	chr4	187177145:187177241:187178379:187178519:187179174:187179446,	187178380	187178519	187178433	187178433	Nonsense_Mutation	G	T	p.E547*
UCEC	TCGA-B5-A0JY-01	F11	ENST00000452239.1,ENST00000403665.2,ENST00000264692.4	chr4	187197008:187197050:187197384:187197544:187201165:187201275,	187197385	187197544	187197534	187197534	Nonsense_Mutation	G	T	p.E249*
UCEC	TCGA-D1-A17Q-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187538991	187538991	Nonsense_Mutation	G	A	p.R2917*
UCEC	TCGA-B5-A11E-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539690	187539690	Nonsense_Mutation	C	A	p.E2684*
UCEC	TCGA-D1-A103-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539951	187539951	Nonsense_Mutation	G	A	p.R2597*
UCEC	TCGA-BS-A0UV-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539951	187539951	Nonsense_Mutation	G	A	p.R2597*
UCEC	TCGA-AX-A05Z-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539951	187539951	Nonsense_Mutation	G	A	p.R2597*
UCEC	TCGA-BS-A0UJ-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542225	187542225	Nonsense_Mutation	C	A	p.E1839*
UCEC	TCGA-BS-A0TC-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542795	187542795	Nonsense_Mutation	C	A	p.E1649*
UCEC	TCGA-B5-A11E-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542861	187542861	Nonsense_Mutation	G	A	p.R1627*
UCEC	TCGA-AX-A0J0-01	FAT1	ENST00000441802.2	chr4	187560875:187560937:187584452:187584767:187627716:187630999,	187584453	187584767	187584594	187584594	Nonsense_Mutation	C	A	p.E1147*
UCEC	TCGA-B5-A0JY-01	PLEKHG4B	ENST00000502646.1,ENST00000283426.6	chr5	144941:145035:151627:151714:154989:155106,	151628	151714	151676	151676	Nonsense_Mutation	G	T	p.E296*
UCEC	TCGA-BS-A0TC-01	EXOC3	ENST00000315013.5,ENST00000511015.1,ENST00000503889.2,ENST00000512944.1	chr5	462074:462185:462271:462422:464404:464527,	462272	462422	462289	462289	Nonsense_Mutation	T	G	p.L507*
UCEC	TCGA-BS-A0TC-01	EXOC3	ENST00000515601.2	chr5	462074:462185:462271:462644:464404:464527,	462272	462644	462289	462289	Nonsense_Mutation	T	G	p.L507*
UCEC	TCGA-B5-A0JY-01	LPCAT1	ENST00000475622.1,ENST00000283415.3,ENST00000514484.2	chr5	1489860:1489973:1494814:1495029:1501575:1501718,	1494815	1495029	1494891	1494891	Nonsense_Mutation	G	A	p.R135*
UCEC	TCGA-AP-A056-01	NSUN2	ENST00000506139.1	chr5	6623326:6623398:6625676:6625782:6631985:6632090,6623326:6623398:6625676:6625782:6632711:6632869,	6625677	6625782	6625745	6625745	Nonsense_Mutation	G	A	p.R133*
UCEC	TCGA-AX-A05Z-01	SEMA5A	ENST00000382496.5,ENST00000509486.1,ENST00000513968.1	chr5	9318483:9318529:9337824:9337924:9379934:9380135,	9337825	9337924	9337844	9337844	Nonsense_Mutation	C	A	p.E69*
UCEC	TCGA-AX-A0J1-01	CMBL	ENST00000506821.1,ENST00000296658.3	chr5	10288533:10288641:10290659:10290893:10307736:10307951,	10290660	10290893	10290713	10290713	Nonsense_Mutation	C	T	p.W54*
UCEC	TCGA-D1-A17Q-01	DNAH5	ENST00000265104.4	chr5	13716595:13716799:13717423:13717629:13718990:13719210,	13717424	13717629	13717498	13717498	Nonsense_Mutation	C	A	p.E4211*
UCEC	TCGA-AP-A056-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14397151:14397263:14398988:14399179:14401071:14401173,	14398989	14399179	14399069	14399069	Nonsense_Mutation	C	T	p.R1502*
UCEC	TCGA-B5-A11J-01	TRIO	ENST00000508717.1	chr5	14502687:14502766:14504501:14504702:14507230:14507369,14502687:14502766:14504501:14504702:14507988:14508442,	14504502	14504702	14504623	14504623	Nonsense_Mutation	C	T	p.Q2845*
UCEC	TCGA-AP-A059-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16674961:16675259:16676139:16676263:16680055:16680213,	16676140	16676263	16676255	16676255	Nonsense_Mutation	G	T	p.C1517*
UCEC	TCGA-B5-A0JY-01	DROSHA	ENST00000344624.3,ENST00000511367.2	chr5	31515100:31515326:31521229:31521322:31526185:31526397,31515560:31515671:31521229:31521322:31526185:31526344,	31521230	31521322	31521294	31521294	Nonsense_Mutation	G	A	p.R295*
UCEC	TCGA-AX-A0J1-01	DROSHA	ENST00000344624.3,ENST00000511367.2	chr5	31515100:31515326:31521229:31521322:31526185:31526397,31515560:31515671:31521229:31521322:31526185:31526344,	31521230	31521322	31521318	31521318	Nonsense_Mutation	G	A	p.R287*
UCEC	TCGA-B5-A0JY-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087470	32087470	Nonsense_Mutation	C	T	p.R1306*
UCEC	TCGA-BS-A0UF-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32088637	32088637	Nonsense_Mutation	G	T	p.E1695*
UCEC	TCGA-AX-A05Z-01	MTMR12	ENST00000382142.3,ENST00000280285.5,ENST00000264934.5	chr5	32239106:32239279:32242162:32242233:32243626:32243705,	32242163	32242233	32242202	32242202	Nonsense_Mutation	C	A	p.E378*
UCEC	TCGA-BS-A0UF-01	TTC23L	ENST00000502674.1,ENST00000505624.1,ENST00000514080.1,ENST00000506758.1	chr5	34845591:34845778:34850289:34850413:34863002:34863115,	34850290	34850413	34850317	34850317	Nonsense_Mutation	C	T	p.R95*
UCEC	TCGA-D1-A17Q-01	DNAJC21	ENST00000342382.4,ENST00000382021.2	chr5	34941200:34941288:34944971:34945130:34945826:34945908,34941200:34941288:34944971:34945130:34945865:34945908,	34944972	34945130	34945048	34945048	Nonsense_Mutation	G	T	p.E354*
UCEC	TCGA-B5-A0JY-01	DNAJC21	ENST00000342382.4,ENST00000382021.2	chr5	34941200:34941288:34944971:34945130:34945826:34945908,34941200:34941288:34944971:34945130:34945865:34945908,	34944972	34945130	34945105	34945105	Nonsense_Mutation	G	T	p.E373*
UCEC	TCGA-BS-A0UV-01	AGXT2	ENST00000231420.6,ENST00000512135.1	chr5	35003867:35003966:35010104:35010254:35025867:35025938,35003867:35003966:35010104:35010254:35013058:35013150,	35010105	35010254	35010122	35010122	Nonsense_Mutation	C	A	p.E441*
UCEC	TCGA-B5-A11E-01	PRLR	ENST00000231423.3	chr5	35048876:35049513:35066050:35066204:35068317:35068387,	35066051	35066204	35066123	35066123	Nonsense_Mutation	C	A	p.E313*
UCEC	TCGA-BS-A0UF-01	PRLR	ENST00000509140.1,ENST00000397391.3,ENST00000513753.1,ENST00000382002.5,ENST00000231423.3,ENST00000509934.1,ENST00000542609.1,ENST00000514088.1,ENST00000310101.5,ENST00000348262.3	chr5	35070225:35070367:35072676:35072846:35089652:35089722,35070225:35070367:35072676:35072846:35084571:35084741,	35072677	35072846	35072709	35072709	Nonsense_Mutation	G	A	p.R171*
UCEC	TCGA-B5-A0JY-01	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740060	35740060	Nonsense_Mutation	G	T	p.E1035*
UCEC	TCGA-AP-A056-01	UGT3A1	ENST00000507113.1,ENST00000503189.1,ENST00000274278.3	chr5	35957289:35957521:35965487:35966019:35968120:35968235,	35965488	35966019	35966015	35966015	Nonsense_Mutation	C	A	p.E106*
UCEC	TCGA-AP-A0LM-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37059004:37059267:37060945:37061120:37063891:37064080,	37060946	37061120	37060996	37060996	Nonsense_Mutation	C	T	p.R85*
UCEC	TCGA-AP-A051-01	EGFLAM	ENST00000397202.2,ENST00000322350.5,ENST00000397210.3,ENST00000506135.1,ENST00000354891.3,ENST00000514476.1,ENST00000508131.1,ENST00000336740.6	chr5	38451416:38451560:38458412:38458496:38463009:38463113,	38458413	38458496	38458480	38458480	Nonsense_Mutation	C	T	p.R919*
UCEC	TCGA-D1-A103-01	LIFR	ENST00000506003.1,ENST00000263409.4,ENST00000453190.2	chr5	38489179:38489347:38490291:38490393:38493707:38493887,	38490292	38490393	38490298	38490298	Nonsense_Mutation	C	A	p.E721*
UCEC	TCGA-D1-A103-01	LIFR	ENST00000503088.1,ENST00000263409.4,ENST00000453190.2	chr5	38499614:38499685:38502738:38502901:38504077:38504223,	38502739	38502901	38502883	38502883	Nonsense_Mutation	C	A	p.G486*
UCEC	TCGA-BS-A0UV-01	C9	ENST00000263408.4	chr5	39311238:39311479:39315876:39316131:39331777:39331916,	39315877	39316131	39315889	39315889	Nonsense_Mutation	A	C	p.Y286*
UCEC	TCGA-AX-A0J0-01	TTC33	ENST00000337702.4	chr5	40716246:40716600:40728446:40728578:40746899:40747121,40716246:40716600:40728446:40728578:40730363:40730445,	40728447	40728578	40728533	40728533	Nonsense_Mutation	C	A	p.E117*
UCEC	TCGA-B5-A0JY-01	TTC33	ENST00000511730.2	chr5	40730363:40730445:40746899:40747121:40755925:40756047,	40746900	40747121	40746976	40746976	Nonsense_Mutation	C	A	p.E49*
UCEC	TCGA-AX-A05Z-01	C7	ENST00000313164.9	chr5	40959550:40959722:40962186:40962274:40964842:40964975,	40962187	40962274	40962230	40962230	Nonsense_Mutation	G	T	p.E569*
UCEC	TCGA-B5-A11E-01	C7	ENST00000313164.9	chr5	40959550:40959722:40962186:40962274:40964842:40964975,	40962187	40962274	40962263	40962263	Nonsense_Mutation	G	T	p.G580*
UCEC	TCGA-AX-A05Z-01	MRPS30	ENST00000507110.1,ENST00000515647.1	chr5	44811110:44811256:44812016:44812122:44813207:44813384,	44812017	44812122	44812047	44812047	Nonsense_Mutation	G	T	p.E260*
UCEC	TCGA-AP-A056-01	EMB	ENST00000303221.5,ENST00000508934.1,ENST00000514111.1,ENST00000505896.1	chr5	49695692:49695747:49698119:49698153:49699011:49699288,	49698120	49698153	49698142	49698142	Nonsense_Mutation	C	A	p.E297*
UCEC	TCGA-AP-A059-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50090040:50090166:50090686:50091251:50092815:50092866,	50090687	50091251	50091162	50091162	Nonsense_Mutation	G	T	p.E447*
UCEC	TCGA-AP-A051-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50122588:50122637:50123777:50123890:50124145:50124218,	50123778	50123890	50123838	50123838	Nonsense_Mutation	G	T	p.E680*
UCEC	TCGA-BS-A0TC-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55243392:55243417:55247291:55247432:55247756:55247903,	55247292	55247432	55247319	55247319	Nonsense_Mutation	C	A	p.E605*
UCEC	TCGA-AX-A0J0-01	SETD9	ENST00000285947.2,ENST00000541720.1	chr5	56205450:56205570:56206995:56207363:56208837:56208943,	56206996	56207363	56207237	56207237	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-AX-A0J0-01	SETD9	ENST00000480414.1	chr5	56205450:56205570:56206995:56207329:56208837:56208943,	56206996	56207329	56207237	56207237	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-AP-A0LM-01	RNF180	ENST00000389100.4,ENST00000381081.2	chr5	63461708:63461780:63496634:63496769:63507891:63507987,	63496635	63496769	63496650	63496650	Nonsense_Mutation	G	T	p.E6*
UCEC	TCGA-AX-A05Z-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589618	67589618	Nonsense_Mutation	C	T	p.R461*
UCEC	TCGA-AX-A0J0-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589618	67589618	Nonsense_Mutation	C	T	p.R461*
UCEC	TCGA-AX-A05Z-01	CCDC125	ENST00000511257.1,ENST00000383374.2,ENST00000396499.1,ENST00000396496.2	chr5	68599673:68599756:68602643:68602729:68603777:68603855,	68602644	68602729	68602702	68602702	Nonsense_Mutation	C	A	p.E187*
UCEC	TCGA-AP-A051-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000354312.3,ENST00000521422.1,ENST00000345306.6	chr5	68692223:68692373:68695875:68695996:68706319:68706377,	68695876	68695996	68695962	68695962	Nonsense_Mutation	C	A	p.Y564*
UCEC	TCGA-AX-A05Z-01	BDP1	ENST00000358731.4,ENST00000380675.2	chr5	70855808:70856064:70858100:70858347:70860580:70863647,	70858101	70858347	70858142	70858142	Nonsense_Mutation	C	A	p.S2513*
UCEC	TCGA-B5-A0JY-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000447967.2,ENST00000454282.1,ENST00000520850.1,ENST00000508762.1	chr5	72168494:72168547:72171441:72171564:72173054:72173173,	72171442	72171564	72171523	72171523	Nonsense_Mutation	C	T	p.R254*
UCEC	TCGA-D1-A17Q-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000447967.2,ENST00000454282.1,ENST00000520850.1,ENST00000508762.1	chr5	72168494:72168547:72171441:72171564:72173054:72173173,	72171442	72171564	72171523	72171523	Nonsense_Mutation	C	T	p.R254*
UCEC	TCGA-BS-A0UV-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000430046.2	chr5	72374006:72374139:72377609:72377809:72378587:72378652,	72377610	72377809	72377614	72377614	Nonsense_Mutation	C	A	p.S662*
UCEC	TCGA-AX-A05Z-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931356	73931356	Nonsense_Mutation	C	A	p.E319*
UCEC	TCGA-AX-A05Z-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931356	73931356	Nonsense_Mutation	C	A	p.E319*
UCEC	TCGA-B5-A0JY-01	ANKRD31	ENST00000274361.3	chr5	74434670:74434808:74441811:74443330:74444400:74444453,	74441812	74443330	74441965	74441965	Nonsense_Mutation	C	A	p.E1091*
UCEC	TCGA-BS-A0UF-01	ANKRD31	ENST00000274361.3	chr5	74434670:74434808:74441811:74443330:74444400:74444453,	74441812	74443330	74442421	74442421	Nonsense_Mutation	C	A	p.E939*
UCEC	TCGA-BS-A0UV-01	POLK	ENST00000514296.1	chr5	74807715:74807739:74842834:74842982:74848296:74848416,74830652:74830789:74842834:74842982:74848296:74848416,	74842835	74842982	74842947	74842947	Nonsense_Mutation	G	T	p.E34*
UCEC	TCGA-AP-A056-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3,ENST00000514001.1,ENST00000505766.1	chr5	75960850:75961000:75964505:75964669:75967583:75967609,	75964506	75964669	75964620	75964620	Nonsense_Mutation	G	T	p.E932*
UCEC	TCGA-BS-A0UF-01	IQGAP2	ENST00000504477.1,ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3	chr5	75991278:75991491:75993811:75993972:75996900:75997038,	75993812	75993972	75993845	75993845	Nonsense_Mutation	C	T	p.R1414*
UCEC	TCGA-BS-A0UF-01	PDE8B	ENST00000340978.3,ENST00000333194.4,ENST00000505283.1,ENST00000342343.4,ENST00000346042.3,ENST00000264917.5	chr5	76715591:76715712:76717645:76717813:76721591:76721721,	76717646	76717813	76717775	76717775	Nonsense_Mutation	G	T	p.E794*
UCEC	TCGA-AX-A0J0-01	AP3B1	ENST00000522901.1,ENST00000519295.1,ENST00000255194.6	chr5	77311233:77311372:77316515:77316613:77330184:77330269,	77316516	77316613	77316567	77316567	Nonsense_Mutation	C	A	p.E981*
UCEC	TCGA-D1-A17Q-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334942	77334942	Nonsense_Mutation	G	A	p.R912*
UCEC	TCGA-AX-A05Z-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334942	77334942	Nonsense_Mutation	G	A	p.R912*
UCEC	TCGA-BS-A0UV-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77335050	77335050	Nonsense_Mutation	G	A	p.R876*
UCEC	TCGA-A5-A0GP-01	JMY	ENST00000396137.4	chr5	78602197:78602284:78608225:78608321:78610079:78610674,	78608226	78608321	78608307	78608307	Nonsense_Mutation	C	T	p.R684*
UCEC	TCGA-AX-A05Z-01	HOMER1	ENST00000334082.6,ENST00000508576.1	chr5	78734832:78734972:78742875:78742968:78746812:78746944,	78742876	78742968	78742962	78742962	Nonsense_Mutation	C	A	p.E101*
UCEC	TCGA-D1-A17Q-01	ZFYVE16	ENST00000338008.5,ENST00000511829.1,ENST00000505560.1,ENST00000512907.1,ENST00000510158.1	chr5	79755257:79755313:79768579:79768742:79769572:79769678,	79768580	79768742	79768693	79768693	Nonsense_Mutation	G	T	p.E1380*
UCEC	TCGA-BS-A0UV-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815578	82815578	Nonsense_Mutation	G	T	p.E485*
UCEC	TCGA-B5-A0JY-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816085	82816085	Nonsense_Mutation	G	T	p.E654*
UCEC	TCGA-B5-A11N-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816085	82816085	Nonsense_Mutation	G	T	p.E654*
UCEC	TCGA-AP-A056-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816178	82816178	Nonsense_Mutation	G	T	p.E685*
UCEC	TCGA-B5-A0JY-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82834562	82834562	Nonsense_Mutation	G	T	p.E1914*
UCEC	TCGA-BS-A0TC-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835822	82835822	Nonsense_Mutation	G	T	p.E2334*
UCEC	TCGA-BS-A0UF-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835990	82835990	Nonsense_Mutation	G	T	p.E2390*
UCEC	TCGA-B5-A0JY-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836059	82836059	Nonsense_Mutation	G	T	p.E2413*
UCEC	TCGA-B5-A11H-01	CETN3	ENST00000283122.3	chr5	89689749:89689924:89695174:89695366:89701501:89701616,	89695175	89695366	89695217	89695217	Nonsense_Mutation	G	A	p.R140*
UCEC	TCGA-AX-A0J0-01	CETN3	ENST00000283122.3	chr5	89689749:89689924:89695174:89695366:89701501:89701616,	89695175	89695366	89695217	89695217	Nonsense_Mutation	G	A	p.R140*
UCEC	TCGA-BS-A0TC-01	CETN3	ENST00000283122.3	chr5	89689749:89689924:89695174:89695366:89701501:89701616,	89695175	89695366	89695331	89695331	Nonsense_Mutation	C	A	p.E102*
UCEC	TCGA-AX-A0J0-01	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505208.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8,ENST00000506568.4,ENST00000512425.1	chr5	94204037:94204157:94206121:94206196:94206576:94206678,	94206122	94206196	94206163	94206163	Nonsense_Mutation	C	A	p.E759*
UCEC	TCGA-BS-A0TC-01	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505208.1,ENST00000429576.2,ENST00000312216.8,ENST00000510732.1,ENST00000513695.1,ENST00000503301.1,ENST00000514780.1,ENST00000507214.1	chr5	94278097:94278131:94288922:94289065:94353070:94353188,	94288923	94289065	94288995	94288995	Nonsense_Mutation	C	A	p.E112*
UCEC	TCGA-AX-A0J0-01	FAM81B	ENST00000513529.1,ENST00000503099.1,ENST00000283357.5	chr5	94749789:94749894:94755987:94756106:94764306:94764436,	94755988	94756106	94756012	94756012	Nonsense_Mutation	C	T	p.R188*
UCEC	TCGA-D1-A17Q-01	ELL2	ENST00000237853.4	chr5	95236659:95236784:95242226:95242486:95249474:95249638,	95242227	95242486	95242391	95242391	Nonsense_Mutation	G	A	p.R193*
UCEC	TCGA-B5-A0JY-01	ELL2	ENST00000237853.4	chr5	95236659:95236784:95242226:95242486:95249474:95249638,	95242227	95242486	95242391	95242391	Nonsense_Mutation	G	A	p.R193*
UCEC	TCGA-AX-A05Z-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000512620.1,ENST00000508608.1,ENST00000510156.1,ENST00000508830.1,ENST00000513666.1,ENST00000511782.1,ENST00000341926.3,ENST00000395813.1,ENST00000395812.2,ENST00000511049.1,ENST00000510756.1,ENST00000421689.2	chr5	96075804:96075822:96076448:96076487:96076969:96077062,	96076449	96076487	96076486	96076486	Nonsense_Mutation	C	T	p.R240*
UCEC	TCGA-AP-A0LM-01	ERAP1	ENST00000296754.3,ENST00000443439.2	chr5	96129102:96129216:96129505:96129660:96130744:96130865,	96129506	96129660	96129595	96129595	Nonsense_Mutation	C	A	p.E329*
UCEC	TCGA-D1-A16Y-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315297	96315297	Nonsense_Mutation	A	T	p.K159*
UCEC	TCGA-D1-A103-01	LNPEP	ENST00000231368.5,ENST00000395770.3	chr5	96360224:96360386:96362320:96362461:96363436:96363518,	96362321	96362461	96362355	96362355	Nonsense_Mutation	C	T	p.R920*
UCEC	TCGA-B5-A0JY-01	CHD1	ENST00000514344.1,ENST00000284049.3	chr5	98194667:98194719:98199111:98199290:98204198:98204243,98195675:98195772:98199111:98199290:98204198:98204243,	98199112	98199290	98199149	98199149	Nonsense_Mutation	C	A	p.E1464*
UCEC	TCGA-AX-A05Z-01	CHD1	ENST00000514344.1,ENST00000284049.3	chr5	98194667:98194719:98199111:98199290:98204198:98204243,98195675:98195772:98199111:98199290:98204198:98204243,	98199112	98199290	98199284	98199284	Nonsense_Mutation	C	A	p.E1419*
UCEC	TCGA-AX-A0J0-01	CHD1	ENST00000284049.3	chr5	98207754:98207905:98208120:98208259:98209296:98209427,	98208121	98208259	98208173	98208173	Nonsense_Mutation	C	A	p.E1220*
UCEC	TCGA-B5-A0JY-01	SLCO6A1	ENST00000514765.2,ENST00000513675.1,ENST00000379810.1,ENST00000379807.3,ENST00000389019.3,ENST00000506729.1	chr5	101709040:101709198:101724391:101724529:101726684:101726749,	101724392	101724529	101724491	101724491	Nonsense_Mutation	C	A	p.E640*
UCEC	TCGA-A5-A0VP-01	PAM	ENST00000438793.3,ENST00000509636.1,ENST00000346918.2,ENST00000304400.7,ENST00000379787.4,ENST00000348126.2,ENST00000455264.2	chr5	102202976:102203097:102237059:102237117:102249637:102249725,	102237060	102237117	102237087	102237087	Nonsense_Mutation	C	T	p.R80*
UCEC	TCGA-B5-A0JY-01	PAM	ENST00000438793.3,ENST00000502472.1,ENST00000509636.1,ENST00000346918.2,ENST00000274392.9,ENST00000345721.2,ENST00000304400.7,ENST00000379787.4,ENST00000348126.2,ENST00000506260.1,ENST00000455264.2	chr5	102249637:102249725:102260660:102260746:102262288:102262372,	102260661	102260746	102260717	102260717	Nonsense_Mutation	G	T	p.E119*
UCEC	TCGA-AP-A056-01	FBXL17	ENST00000359660.5,ENST00000481160.1,ENST00000542267.1,ENST00000496714.1	chr5	107559821:107559929:107684099:107684231:107700438:107700468,	107684100	107684231	107684213	107684213	Nonsense_Mutation	C	A	p.E67*
UCEC	TCGA-AX-A0J1-01	MAN2A1	ENST00000261483.4	chr5	109155369:109155588:109155920:109156043:109159423:109159538,	109155921	109156043	109155943	109155943	Nonsense_Mutation	G	A	p.W170*
UCEC	TCGA-AP-A059-01	STARD4	ENST00000512160.1,ENST00000505803.1	chr5	110842027:110842077:110843026:110843140:110848082:110848169,110842027:110842077:110843026:110843140:110848088:110848233,	110843027	110843140	110843044	110843044	Nonsense_Mutation	G	A	p.R30*
UCEC	TCGA-BS-A0UJ-01	NREP	ENST00000395634.3	chr5	111071192:111071204:111310970:111311075:111312406:111312628,	111310971	111311075	111311066	111311066	Nonsense_Mutation	C	A	p.E14*
UCEC	TCGA-AP-A051-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128191	112128191	Nonsense_Mutation	C	T	p.R232*
UCEC	TCGA-B5-A11N-01	DCP2	ENST00000513585.1,ENST00000389063.2,ENST00000543319.1	chr5	112339638:112339774:112343634:112343739:112346452:112346504,	112343635	112343739	112343646	112343646	Nonsense_Mutation	G	T	p.E300*
UCEC	TCGA-AP-A0LM-01	PGGT1B	ENST00000514178.1,ENST00000419445.1	chr5	114552561:114552670:114557520:114557705:114566672:114566718,	114557521	114557705	114557703	114557703	Nonsense_Mutation	C	A	p.G221*
UCEC	TCGA-AX-A0J1-01	PPIC	ENST00000306442.4	chr5	122361478:122361663:122364469:122364563:122364999:122365113,	122364470	122364563	122364503	122364503	Nonsense_Mutation	C	A	p.G98*
UCEC	TCGA-B5-A0JY-01	CSNK1G3	ENST00000345990.4,ENST00000395411.1	chr5	122847953:122848264:122881110:122881535:122888800:122888841,	122881111	122881535	122881529	122881529	Nonsense_Mutation	C	T	p.R58*
UCEC	TCGA-D1-A103-01	ZNF608	ENST00000505686.1	chr5	123979203:123979376:123979936:123980354:123985302:123985390,	123979937	123980354	123980344	123980344	Nonsense_Mutation	G	T	p.S1239*
UCEC	TCGA-AP-A0LM-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124080385	124080385	Nonsense_Mutation	C	A	p.E100*
UCEC	TCGA-AP-A0LM-01	RAD50	ENST00000265335.6,ENST00000423956.1,ENST00000453394.1,ENST00000378823.3,ENST00000533482.1	chr5	131915008:131915194:131915553:131915758:131923253:131923382,	131915554	131915758	131915615	131915615	Nonsense_Mutation	G	T	p.E205*
UCEC	TCGA-AP-A051-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232071	132232071	Nonsense_Mutation	C	A	p.E751*
UCEC	TCGA-AP-A051-01	HSPA4	ENST00000304858.2	chr5	132400671:132400729:132403108:132403249:132406065:132406188,	132403109	132403249	132403232	132403232	Nonsense_Mutation	G	T	p.G97*
UCEC	TCGA-BS-A0UV-01	CDKL3	ENST00000523054.1	chr5	133685984:133686118:133695587:133695782:133706688:133706695,	133695588	133695782	133695617	133695617	Nonsense_Mutation	G	A	p.R111*
UCEC	TCGA-AX-A05Z-01	UBE2B	ENST00000265339.2,ENST00000506787.1	chr5	133712364:133712385:133716409:133716499:133724015:133724104,	133716410	133716499	133716430	133716430	Nonsense_Mutation	G	T	p.E58*
UCEC	TCGA-AP-A0LM-01	UBE2B	ENST00000265339.2	chr5	133710073:133710154:133724015:133724104:133725915:133725989,133716409:133716499:133724015:133724104:133725915:133725989,	133724016	133724104	133724057	133724057	Nonsense_Mutation	C	T	p.R95*
UCEC	TCGA-AP-A0LM-01	UBE2B	ENST00000507277.1	chr5	133716409:133716499:133724042:133724104:133725915:133725989,	133724043	133724104	133724057	133724057	Nonsense_Mutation	C	T	p.R95*
UCEC	TCGA-D1-A103-01	SEC24A	ENST00000398844.2	chr5	134028291:134028347:134029416:134029623:134032815:134032936,	134029417	134029623	134029591	134029591	Nonsense_Mutation	C	T	p.R652*
UCEC	TCGA-AP-A056-01	DDX46	ENST00000452510.2,ENST00000354283.4	chr5	134102606:134102750:134106592:134106689:134109385:134109551,	134106593	134106689	134106675	134106675	Nonsense_Mutation	G	T	p.E145*
UCEC	TCGA-A5-A0GP-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000604555.1,ENST00000305126.8,ENST00000515433.1,ENST00000514554.1,ENST00000442011.2,ENST00000508767.1	chr5	135388706:135388808:135389631:135389769:135390404:135390507,	135389632	135389769	135389745	135389745	Nonsense_Mutation	G	A	p.W38*
UCEC	TCGA-AP-A056-01	SMAD5	ENST00000545620.1	chr5	135468592:135468651:135489280:135489852:135496544:135496796,	135489281	135489852	135489807	135489807	Nonsense_Mutation	G	T	p.E120*
UCEC	TCGA-AP-A059-01	FAM13B	ENST00000425075.2,ENST00000033079.3,ENST00000420893.2	chr5	137346696:137346838:137347456:137347634:137353990:137354203,	137347457	137347634	137347509	137347509	Nonsense_Mutation	C	A	p.E166*
UCEC	TCGA-AP-A0LM-01	BRD8	ENST00000411594.2,ENST00000230901.5,ENST00000441656.1,ENST00000454473.1,ENST00000512140.1,ENST00000402931.1,ENST00000418329.1,ENST00000254900.5,ENST00000506167.1,ENST00000455658.2	chr5	137497484:137497553:137497742:137497835:137498818:137499033,	137497743	137497835	137497813	137497813	Nonsense_Mutation	C	A	p.E704*
UCEC	TCGA-AP-A059-01	KIF20A	ENST00000503417.1,ENST00000394894.3,ENST00000511638.1,ENST00000504621.1,ENST00000513276.1	chr5	137515348:137515534:137517110:137517200:137517297:137517393,	137517111	137517200	137517149	137517149	Nonsense_Mutation	C	A	p.Y68*
UCEC	TCGA-AP-A059-01	CDC23	ENST00000394886.2	chr5	137534114:137534212:137534293:137534471:137536795:137536928,	137534294	137534471	137534408	137534408	Nonsense_Mutation	C	A	p.E240*
UCEC	TCGA-BS-A0UV-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000360541.5	chr5	137844357:137844505:137846253:137846318:137846733:137846889,	137846254	137846318	137846286	137846286	Nonsense_Mutation	C	A	p.E351*
UCEC	TCGA-AP-A056-01	CTNNA1	ENST00000518825.1,ENST00000520158.1,ENST00000519309.1,ENST00000302763.7	chr5	138118865:138119061:138145726:138145893:138147871:138147991,	138145727	138145893	138145786	138145786	Nonsense_Mutation	C	T	p.R121*
UCEC	TCGA-AP-A059-01	CTNNA1	ENST00000518585.1,ENST00000518825.1,ENST00000520158.1,ENST00000519309.1,ENST00000355078.5,ENST00000521724.1,ENST00000518910.1,ENST00000302763.7	chr5	138145726:138145893:138147871:138147991:138160218:138160277,	138147872	138147991	138147923	138147923	Nonsense_Mutation	G	T	p.G174*
UCEC	TCGA-BS-A0UV-01	CTNNA1	ENST00000518825.1,ENST00000355078.5,ENST00000521724.1,ENST00000302763.7	chr5	138147871:138147991:138160218:138160488:138163203:138163407,	138160219	138160488	138160459	138160459	Nonsense_Mutation	G	T	p.E277*
UCEC	TCGA-BS-A0UF-01	CTNNA1	ENST00000522013.1,ENST00000540387.1,ENST00000517533.1,ENST00000518825.1,ENST00000523298.1,ENST00000355078.5,ENST00000521724.1,ENST00000520400.1,ENST00000302763.7,ENST00000523685.1	chr5	138223178:138223331:138240037:138240130:138253430:138253468,	138240038	138240130	138240092	138240092	Nonsense_Mutation	C	T	p.R451*
UCEC	TCGA-D1-A16X-01	CTNNA1	ENST00000522013.1,ENST00000540387.1,ENST00000517533.1,ENST00000518825.1,ENST00000523298.1,ENST00000355078.5,ENST00000521724.1,ENST00000520400.1,ENST00000302763.7,ENST00000523685.1	chr5	138223178:138223331:138240037:138240130:138253430:138253468,	138240038	138240130	138240092	138240092	Nonsense_Mutation	C	T	p.R451*
UCEC	TCGA-BS-A0UV-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643732	138643732	Nonsense_Mutation	G	T	p.E210*
UCEC	TCGA-BS-A0UV-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643732	138643732	Nonsense_Mutation	G	T	p.E210*
UCEC	TCGA-B5-A0JY-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643784	138643784	Nonsense_Mutation	G	T	p.E1*
UCEC	TCGA-B5-A0JY-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643784	138643784	Nonsense_Mutation	G	T	p.E1*
UCEC	TCGA-BS-A0UF-01	HARS2	ENST00000437649.2	chr5	140071198:140071341:140073175:140073250:140073519:140073572,	140073176	140073250	140073220	140073220	Nonsense_Mutation	G	T	p.E85*
UCEC	TCGA-BS-A0UF-01	HARS2	ENST00000520095.1,ENST00000510104.1	chr5	140071198:140071341:140073075:140073250:140073519:140073572,	140073076	140073250	140073220	140073220	Nonsense_Mutation	G	T	p.E85*
UCEC	TCGA-BS-A0UF-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586884	143586884	Nonsense_Mutation	G	T	p.E203*
UCEC	TCGA-BS-A0UF-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586896	143586896	Nonsense_Mutation	G	T	p.E207*
UCEC	TCGA-D1-A17Q-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586926	143586926	Nonsense_Mutation	C	T	p.R217*
UCEC	TCGA-AP-A0LM-01	LARS	ENST00000510191.1,ENST00000394434.2	chr5	145543960:145544034:145547690:145547828:145551472:145551553,	145547691	145547828	145547762	145547762	Nonsense_Mutation	C	A	p.E121*
UCEC	TCGA-B5-A0JY-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145598547:145598666:145602965:145603090:145608508:145608600,	145602966	145603090	145603076	145603076	Nonsense_Mutation	G	T	p.E97*
UCEC	TCGA-D1-A16X-01	RBM27	ENST00000265271.5	chr5	145650516:145650621:145651045:145651237:145664184:145664295,	145651046	145651237	145651214	145651214	Nonsense_Mutation	G	T	p.E989*
UCEC	TCGA-D1-A17Q-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883447	145883447	Nonsense_Mutation	C	T	p.R870*
UCEC	TCGA-AP-A059-01	JAKMIP2	ENST00000265272.5	chr5	147040510:147041008:147051240:147051517:147162018:147162105,	147051241	147051517	147051354	147051354	Nonsense_Mutation	G	A	p.R6*
UCEC	TCGA-BS-A0UV-01	SPINK5	ENST00000481286.1,ENST00000398454.1,ENST00000476608.1,ENST00000256084.7,ENST00000508733.1,ENST00000507988.1,ENST00000359874.3	chr5	147473916:147474044:147475380:147475468:147477429:147477557,	147475381	147475468	147475439	147475439	Nonsense_Mutation	G	T	p.E285*
UCEC	TCGA-D1-A16X-01	SPINK5	ENST00000398454.1,ENST00000256084.7,ENST00000359874.3	chr5	147499857:147499954:147503395:147503523:147504327:147504400,	147503396	147503523	147503468	147503468	Nonsense_Mutation	C	T	p.R871*
UCEC	TCGA-B5-A0JY-01	CSNK1A1	ENST00000504676.1,ENST00000261798.5,ENST00000515768.1,ENST00000515435.1,ENST00000503350.2,ENST00000377843.2,ENST00000606826.1,ENST00000606719.1	chr5	148889441:148889516:148891356:148891435:148892632:148892683,	148891357	148891435	148891431	148891431	Nonsense_Mutation	G	A	p.R229*
UCEC	TCGA-AP-A056-01	CSNK1A1	ENST00000515768.1,ENST00000515435.1	chr5	148892632:148892772:148897356:148897440:148899852:148899951,	148897357	148897440	148897434	148897434	Nonsense_Mutation	C	A	p.E155*
UCEC	TCGA-B5-A11E-01	CAMK2A	ENST00000398376.3,ENST00000348628.6,ENST00000508662.1	chr5	149631544:149631628:149633006:149633109:149636135:149636208,	149633007	149633109	149633037	149633037	Nonsense_Mutation	C	A	p.E162*
UCEC	TCGA-AP-A051-01	NDST1	ENST00000261797.6	chr5	149877339:149877541:149900429:149901329:149907365:149907860,149887708:149887788:149900429:149901329:149907365:149907860,	149900430	149901329	149901156	149901156	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-AX-A05Z-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150923682	150923682	Nonsense_Mutation	C	A	p.E2336*
UCEC	TCGA-D1-A16X-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150925305	150925305	Nonsense_Mutation	C	A	p.E1795*
UCEC	TCGA-B5-A0JY-01	SPARC	ENST00000231061.4,ENST00000539687.1	chr5	151051133:151051255:151052689:151052777:151054172:151054232,	151052690	151052777	151052711	151052711	Nonsense_Mutation	C	A	p.E63*
UCEC	TCGA-AP-A059-01	SPARC	ENST00000231061.4,ENST00000539687.1	chr5	151051133:151051255:151052689:151052777:151054172:151054232,	151052690	151052777	151052741	151052741	Nonsense_Mutation	C	A	p.G53*
UCEC	TCGA-AX-A05Z-01	LARP1	ENST00000523163.1,ENST00000518742.1,ENST00000518297.1,ENST00000518595.1,ENST00000524248.1,ENST00000336314.4	chr5	154173769:154173822:154174734:154174879:154179150:154179319,	154174735	154174879	154174736	154174736	Nonsense_Mutation	G	T	p.E335*
UCEC	TCGA-AX-A0J1-01	GEMIN5	ENST00000285873.7	chr5	154278750:154278870:154280898:154281046:154282098:154282236,	154280899	154281046	154281030	154281030	Nonsense_Mutation	C	T	p.W961*
UCEC	TCGA-AX-A0J0-01	UBLCP1	ENST00000296786.6,ENST00000519276.1	chr5	158705245:158705362:158710219:158710347:158711911:158713044,	158710220	158710347	158710265	158710265	Nonsense_Mutation	G	T	p.E283*
UCEC	TCGA-AP-A056-01	HMMR	ENST00000393915.4,ENST00000353866.3,ENST00000358715.3,ENST00000432118.2	chr5	162900184:162900259:162900384:162900563:162901062:162901211,	162900385	162900563	162900563	162900563	Nonsense_Mutation	G	T	p.E302*
UCEC	TCGA-BS-A0UF-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000522140.1,ENST00000265293.4,ENST00000393895.3,ENST00000524038.1	chr5	167871498:167871590:167880972:167881105:167882360:167882525,	167880973	167881105	167881049	167881049	Nonsense_Mutation	G	T	p.E868*
UCEC	TCGA-BS-A0UV-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937680	167937680	Nonsense_Mutation	G	T	p.E481*
UCEC	TCGA-BS-A0UF-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000521759.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170640634:170640742:170648761:170648844:170667931:170668146,	170648762	170648844	170648817	170648817	Nonsense_Mutation	G	T	p.E799*
UCEC	TCGA-BS-A0UF-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172513503:172513629:172517317:172518404:172535626:172535821,	172517318	172518404	172517522	172517522	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-AX-A0J0-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172513503:172513629:172517317:172518404:172535626:172535821,	172517318	172518404	172517849	172517849	Nonsense_Mutation	G	T	p.E223*
UCEC	TCGA-B5-A0JY-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176304894:176305128:176305244:176305394:176305475:176305640,	176305245	176305394	176305322	176305322	Nonsense_Mutation	C	A	p.Y649*
UCEC	TCGA-BS-A0UV-01	UIMC1	ENST00000377227.4,ENST00000512031.1,ENST00000506128.1,ENST00000511320.1	chr5	176346170:176346252:176370335:176370489:176378474:176378578,176338311:176338390:176370335:176370489:176378474:176378578,	176370336	176370489	176370378	176370378	Nonsense_Mutation	G	A	p.R519*
UCEC	TCGA-AP-A056-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638935	176638935	Nonsense_Mutation	G	T	p.E1179*
UCEC	TCGA-AX-A0J0-01	PRELID1	ENST00000503853.1,ENST00000303204.4,ENST00000510797.1,ENST00000503216.1	chr5	176731688:176731851:176732871:176732985:176733098:176733154,	176732872	176732985	176732884	176732884	Nonsense_Mutation	C	T	p.R111*
UCEC	TCGA-D1-A160-01	RMND5B	ENST00000507575.1	chr5	177558237:177558377:177565108:177565259:177569583:177569614,177562173:177562313:177565108:177565259:177569583:177569614,177558035:177558055:177565108:177565259:177569583:177569614,	177565109	177565259	177565138	177565138	Nonsense_Mutation	C	A	p.C6*
UCEC	TCGA-D1-A160-01	RMND5B	ENST00000512663.1	chr5	177558237:177558377:177565108:177565397:177569583:177569614,	177565109	177565397	177565138	177565138	Nonsense_Mutation	C	A	p.C6*
UCEC	TCGA-AX-A05Z-01	HNRNPAB	ENST00000504898.1,ENST00000358344.3	chr5	177634094:177634226:177636330:177636448:177637132:177637273,	177636331	177636448	177636358	177636358	Nonsense_Mutation	G	T	p.E233*
UCEC	TCGA-AX-A05Z-01	HNRNPAB	ENST00000506339.1	chr5	177634094:177634226:177636330:177636433:177637132:177637273,	177636331	177636433	177636358	177636358	Nonsense_Mutation	G	T	p.E233*
UCEC	TCGA-BG-A0M4-01	HNRNPH1	ENST00000519958.1	chr5	179045045:179045061:179045145:179045324:179047892:179047960,179044817:179044912:179045145:179045324:179047892:179047960,	179045146	179045324	179045211	179045211	Nonsense_Mutation	C	A	p.E171*
UCEC	TCGA-D1-A17Q-01	HNRNPH1	ENST00000519958.1	chr5	179045045:179045061:179045145:179045324:179047892:179047960,179044817:179044912:179045145:179045324:179047892:179047960,	179045146	179045324	179045265	179045265	Nonsense_Mutation	C	A	p.E153*
UCEC	TCGA-AP-A0LM-01	SQSTM1	ENST00000514093.1,ENST00000376929.3	chr5	179238614:179238682:179249957:179250053:179250857:179250939,	179249958	179250053	179250038	179250038	Nonsense_Mutation	C	T	p.R96*
UCEC	TCGA-BS-A0UF-01	GFPT2	ENST00000518185.1,ENST00000253778.8,ENST00000518906.1	chr5	179751815:179751895:179755276:179755338:179757699:179757834,	179755277	179755338	179755293	179755293	Nonsense_Mutation	C	A	p.E194*
UCEC	TCGA-A5-A0GP-01	CNOT6	ENST00000393356.1,ENST00000261951.4	chr5	179976930:179977117:179980385:179980471:179991488:179991578,	179980386	179980471	179980414	179980414	Nonsense_Mutation	C	T	p.R110*
UCEC	TCGA-B5-A0JY-01	BTNL8	ENST00000511704.1	chr5	180326273:180326359:180338338:180338614:180374511:180374625,	180338339	180338614	180338455	180338455	Nonsense_Mutation	G	T	p.G172*
UCEC	TCGA-AP-A0LM-01	BTNL8	ENST00000503543.1	chr5	180338488:180338614:180374624:180374755:180375354:180375375,	180374625	180374755	180374631	180374631	Nonsense_Mutation	C	T	p.R265*
UCEC	TCGA-AP-A0LM-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374631	180374631	Nonsense_Mutation	C	T	p.R265*
UCEC	TCGA-AP-A051-01	PRPF4B	ENST00000538861.1,ENST00000337659.6,ENST00000481109.1,ENST00000480058.1	chr6	4037652:4037804:4041005:4041161:4042720:4042802,	4041006	4041161	4041037	4041037	Nonsense_Mutation	C	T	p.R482*
UCEC	TCGA-B5-A0JY-01	DSP	ENST00000418664.2	chr6	7578696:7578795:7579507:7580005:7582874:7583616,	7579508	7580005	7579739	7579739	Nonsense_Mutation	G	T	p.E1106*
UCEC	TCGA-B5-A0JY-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7579739	7579739	Nonsense_Mutation	G	T	p.E1106*
UCEC	TCGA-AX-A0J0-01	DSP	ENST00000418664.2	chr6	7578696:7578795:7579507:7580005:7582874:7583616,	7579508	7580005	7579784	7579784	Nonsense_Mutation	G	T	p.E1121*
UCEC	TCGA-AX-A0J0-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7579784	7579784	Nonsense_Mutation	G	T	p.E1121*
UCEC	TCGA-B5-A0JY-01	SIRT5	ENST00000359782.3,ENST00000379262.4,ENST00000606117.1	chr6	13584307:13584457:13588562:13588696:13591900:13592126,	13588563	13588696	13588577	13588577	Nonsense_Mutation	C	T	p.R44*
UCEC	TCGA-AX-A0J0-01	RANBP9	ENST00000539980.1,ENST00000011619.3	chr6	13641430:13641539:13642710:13642823:13644776:13644961,	13642711	13642823	13642738	13642738	Nonsense_Mutation	C	A	p.E400*
UCEC	TCGA-AP-A056-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15410454:15410596:15452236:15452406:15468772:15468949,	15452237	15452406	15452403	15452403	Nonsense_Mutation	C	T	p.R164*
UCEC	TCGA-BS-A0UV-01	DTNBP1	ENST00000515875.1,ENST00000506844.1,ENST00000338950.5,ENST00000344537.5,ENST00000511762.2,ENST00000510395.1,ENST00000355917.3,ENST00000513680.1	chr6	15615497:15615630:15627573:15627706:15637974:15638035,	15627574	15627706	15627595	15627595	Nonsense_Mutation	C	A	p.E112*
UCEC	TCGA-D1-A1NX-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16326633	16326633	Nonsense_Mutation	G	A	p.R637*
UCEC	TCGA-AX-A0J0-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000358380.6,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17794802:17794935:17796899:17797051:17799496:17799670,	17796900	17797051	17797027	17797027	Nonsense_Mutation	C	A	p.E939*
UCEC	TCGA-AP-A056-01	TPMT	ENST00000309983.4	chr6	18139895:18139948:18143826:18143959:18148053:18148146,	18143827	18143959	18143901	18143901	Nonsense_Mutation	C	A	p.E98*
UCEC	TCGA-D1-A17Q-01	KDM1B	ENST00000388870.2,ENST00000297792.5,ENST00000397244.1	chr6	18166497:18166609:18171593:18171710:18186002:18186041,	18171594	18171710	18171678	18171678	Nonsense_Mutation	C	T	p.R168*
UCEC	TCGA-AX-A05Z-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000503715.1,ENST00000244776.7	chr6	18255966:18256082:18256591:18256686:18258183:18258262,	18256592	18256686	18256632	18256632	Nonsense_Mutation	C	A	p.G138*
UCEC	TCGA-AX-A05Z-01	CDKAL1	ENST00000378624.4,ENST00000274695.4,ENST00000378610.1	chr6	20758825:20758874:20781375:20781496:20846305:20846409,	20781376	20781496	20781474	20781474	Nonsense_Mutation	G	T	p.E206*
UCEC	TCGA-BS-A0UV-01	CDKAL1	ENST00000378624.4,ENST00000274695.4,ENST00000378610.1	chr6	20781375:20781496:20846305:20846409:20955649:20955816,	20846306	20846409	20846376	20846376	Nonsense_Mutation	G	T	p.E237*
UCEC	TCGA-BS-A0TC-01	SLC17A3	ENST00000397060.4,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25850686:25850848:25850986:25851105:25855371:25855458,	25850987	25851105	25851022	25851022	Nonsense_Mutation	C	A	p.E266*
UCEC	TCGA-AX-A05Z-01	SLC17A3	ENST00000308453.5,ENST00000397060.4	chr6	25861851:25861939:25862023:25862257:25862460:25862672,	25862024	25862257	25862047	25862047	Nonsense_Mutation	G	A	p.R172*
UCEC	TCGA-BS-A0UF-01	SLC17A3	ENST00000308453.5,ENST00000397060.4	chr6	25861851:25861939:25862023:25862257:25862460:25862672,	25862024	25862257	25862047	25862047	Nonsense_Mutation	G	A	p.R172*
UCEC	TCGA-AP-A0LM-01	SLC17A2	ENST00000360488.3	chr6	25914807:25914898:25915963:25916096:25916912:25917074,	25915964	25916096	25915985	25915985	Nonsense_Mutation	G	A	p.R348*
UCEC	TCGA-AP-A051-01	TRIM38	ENST00000357085.3,ENST00000349458.3	chr6	25963276:25963510:25966562:25967161:25969552:25969648,	25966563	25967161	25966976	25966976	Nonsense_Mutation	C	T	p.Q76*
UCEC	TCGA-D1-A167-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26093013	26093013	Nonsense_Mutation	G	A	p.W239*
UCEC	TCGA-BS-A0UF-01	ZSCAN12	ENST00000396827.3,ENST00000361028.1	chr6	28349967:28350386:28358372:28359519:28360678:28360823,	28358373	28359519	28359367	28359367	Nonsense_Mutation	C	A	p.E234*
UCEC	TCGA-BS-A0UF-01	ZSCAN12	ENST00000396827.3,ENST00000361028.1	chr6	28358372:28359519:28360678:28360823:28365780:28366250,	28360679	28360823	28360757	28360757	Nonsense_Mutation	C	A	p.E157*
UCEC	TCGA-AP-A051-01	TRIM26	ENST00000453195.1,ENST00000454678.2,ENST00000437089.1	chr6	30156943:30156976:30157194:30157310:30157789:30157812,	30157195	30157310	30157216	30157216	Nonsense_Mutation	G	A	p.R295*
UCEC	TCGA-AP-A056-01	VWA7	ENST00000447450.1,ENST00000375688.4,ENST00000467576.1,ENST00000375686.3	chr6	31737451:31737568:31737777:31737890:31740730:31740784,	31737778	31737890	31737834	31737834	Nonsense_Mutation	C	A	p.E382*
UCEC	TCGA-BS-A0UF-01	SLC44A4	ENST00000544672.1,ENST00000375562.4,ENST00000229729.6	chr6	31831353:31831525:31832428:31832513:31832592:31832687,	31832429	31832513	31832433	31832433	Nonsense_Mutation	G	T	p.C669*
UCEC	TCGA-D1-A103-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32816766:32816895:32818096:32818294:32818720:32818926,	32818097	32818294	32818159	32818159	Nonsense_Mutation	C	A	p.E456*
UCEC	TCGA-BS-A0UV-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32816766:32816895:32818096:32818294:32818720:32818926,	32818097	32818294	32818213	32818213	Nonsense_Mutation	G	A	p.R438*
UCEC	TCGA-AX-A0J1-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000478934.1,ENST00000445902.2	chr6	33231855:33231880:33232150:33232274:33232558:33232677,	33232151	33232274	33232201	33232201	Nonsense_Mutation	G	A	p.R492*
UCEC	TCGA-D1-A17Q-01	TCP11	ENST00000444780.2,ENST00000412155.2,ENST00000507706.1,ENST00000418521.2,ENST00000512012.1,ENST00000373974.4,ENST00000311875.5,ENST00000504758.1,ENST00000505911.1,ENST00000505400.1	chr6	35090085:35090114:35096838:35096959:35108981:35109030,35090085:35090114:35096838:35096959:35108523:35108661,35090085:35090114:35096838:35096959:35107796:35108002,35090085:35090114:35096838:35096959:35103883:35103980,	35096839	35096959	35096850	35096850	Nonsense_Mutation	C	A	p.E129*
UCEC	TCGA-BS-A0TC-01	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36270234	36270234	Nonsense_Mutation	G	T	p.E372*
UCEC	TCGA-AX-A05Z-01	RNF8	ENST00000498460.1	chr6	37342395:37342485:37344701:37344809:37358517:37358838,37342395:37342485:37344701:37344809:37348925:37349130,37339287:37339350:37344701:37344809:37358517:37358838,	37344702	37344809	37344787	37344787	Nonsense_Mutation	T	G	p.Y164*
UCEC	TCGA-AP-A0LM-01	DAAM2	ENST00000538976.1,ENST00000398904.2,ENST00000274867.4	chr6	39824022:39824246:39828703:39828793:39832208:39832283,	39828704	39828793	39828731	39828731	Nonsense_Mutation	C	T	p.R66*
UCEC	TCGA-AP-A0LM-01	MOCS1	ENST00000308559.7,ENST00000432280.2,ENST00000340692.5,ENST00000425303.2,ENST00000373188.2,ENST00000373181.4,ENST00000373186.4,ENST00000373195.3,ENST00000373175.4	chr6	39880635:39880748:39881060:39881172:39881517:39881579,	39881061	39881172	39881154	39881154	Nonsense_Mutation	G	A	p.R222*
UCEC	TCGA-BS-A0UV-01	NFYA	ENST00000353205.5,ENST00000341376.6	chr6	41059284:41059433:41060650:41060824:41062134:41062236,	41060651	41060824	41060780	41060780	Nonsense_Mutation	C	T	p.R282*
UCEC	TCGA-AX-A05Z-01	UBR2	ENST00000372899.1,ENST00000372901.1,ENST00000372903.2	chr6	42571325:42571456:42573458:42573597:42574326:42574389,	42573459	42573597	42573592	42573592	Nonsense_Mutation	C	T	p.R266*
UCEC	TCGA-B5-A0JY-01	UBR2	ENST00000372883.3,ENST00000372899.1,ENST00000372901.1	chr6	42650792:42650849:42652531:42652609:42655953:42656124,	42652532	42652609	42652555	42652555	Nonsense_Mutation	T	G	p.L1600*
UCEC	TCGA-AX-A05Z-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43164382:43164600:43166346:43166593:43167003:43167109,	43166347	43166593	43166400	43166400	Nonsense_Mutation	C	T	p.R953*
UCEC	TCGA-D1-A17Q-01	XPO5	ENST00000265351.7,ENST00000398835.3	chr6	43499216:43499313:43501643:43501744:43514307:43514489,	43501644	43501744	43501719	43501719	Nonsense_Mutation	C	A	p.E790*
UCEC	TCGA-AP-A059-01	CAPN11	ENST00000542245.1,ENST00000398776.1	chr6	44140676:44140810:44140954:44141123:44143804:44143888,	44140955	44141123	44141019	44141019	Nonsense_Mutation	G	T	p.G243*
UCEC	TCGA-AP-A059-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44217411:44217571:44217757:44217891:44218027:44218336,	44217758	44217891	44217841	44217841	Nonsense_Mutation	G	T	p.E200*
UCEC	TCGA-B5-A11R-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44219473:44219621:44219735:44220004:44220781:44221115,	44219736	44220004	44219877	44219877	Nonsense_Mutation	C	G	p.S535*
UCEC	TCGA-AP-A059-01	NFKBIE	ENST00000477930.2	chr6	44228210:44228276:44229362:44229585:44230296:44230399,44228210:44228276:44229362:44229585:44232718:44233330,	44229363	44229585	44229417	44229417	Nonsense_Mutation	C	A	p.E352*
UCEC	TCGA-B5-A0JY-01	TCTE1	ENST00000371505.4	chr6	44247901:44248127:44249846:44250296:44253700:44254090,	44249847	44250296	44250242	44250242	Nonsense_Mutation	G	A	p.R301*
UCEC	TCGA-AP-A0LM-01	SLC25A27	ENST00000411689.2	chr6	46620721:46621035:46623579:46623771:46626698:46626783,	46623580	46623771	46623609	46623609	Nonsense_Mutation	C	T	p.R46*
UCEC	TCGA-AP-A051-01	SLC25A27	ENST00000411689.2,ENST00000371347.5,ENST00000452689.2,ENST00000604217.1,ENST00000603486.1,ENST00000604127.1	chr6	46630196:46630235:46632510:46632623:46636445:46636484,	46632511	46632623	46632563	46632563	Nonsense_Mutation	C	T	p.R187*
UCEC	TCGA-BS-A0UV-01	PLA2G7	ENST00000537365.1	chr6	46684711:46684833:46690519:46690662:46703286:46703430,	46690520	46690662	46690525	46690525	Nonsense_Mutation	G	T	p.S35*
UCEC	TCGA-AP-A056-01	TFAP2B	ENST00000263046.4,ENST00000393655.3	chr6	50805687:50805806:50807868:50808010:50810804:50815326,	50807869	50808010	50807985	50807985	Nonsense_Mutation	C	T	p.R353*
UCEC	TCGA-AP-A0LM-01	LRRC1	ENST00000370888.1,ENST00000370882.1,ENST00000487251.1	chr6	53659887:53660213:53706907:53707025:53743790:53743869,	53706908	53707025	53707019	53707019	Nonsense_Mutation	C	T	p.R91*
UCEC	TCGA-AP-A056-01	HMGCLL1	ENST00000308161.4	chr6	55364033:55364097:55378845:55378994:55406526:55406634,	55378846	55378994	55378892	55378892	Nonsense_Mutation	C	A	p.E196*
UCEC	TCGA-D1-A17Q-01	DST	ENST00000523597.1,ENST00000312431.6,ENST00000244364.6,ENST00000482156.1,ENST00000466429.1	chr6	56324928:56325052:56327843:56327954:56328362:56328556,	56327844	56327954	56327871	56327871	Nonsense_Mutation	G	T	p.C5034*
UCEC	TCGA-BS-A0UF-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56468781	56468781	Nonsense_Mutation	C	A	p.E3338*
UCEC	TCGA-AX-A0J0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469027	56469027	Nonsense_Mutation	C	A	p.E3256*
UCEC	TCGA-B5-A0JR-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471184	56471184	Nonsense_Mutation	C	A	p.G2537*
UCEC	TCGA-BK-A0C9-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473404	56473404	Nonsense_Mutation	C	A	p.E1797*
UCEC	TCGA-B5-A11E-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473941	56473941	Nonsense_Mutation	C	A	p.E1618*
UCEC	TCGA-AP-A0LM-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483428	56483428	Nonsense_Mutation	C	A	p.E1802*
UCEC	TCGA-AP-A0LM-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56485366	56485366	Nonsense_Mutation	G	A	p.R1156*
UCEC	TCGA-AP-A056-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394170	64394170	Nonsense_Mutation	G	T	p.E183*
UCEC	TCGA-B5-A0JY-01	PHF3	ENST00000515594.1	chr6	64394029:64395812:64401626:64401933:64404470:64404580,64389900:64390062:64401626:64401933:64404470:64404580,	64401627	64401933	64401724	64401724	Nonsense_Mutation	G	T	p.E763*
UCEC	TCGA-B5-A0JY-01	COL19A1	ENST00000322773.4	chr6	70642674:70642755:70646676:70646802:70647929:70647992,	70646677	70646802	70646711	70646711	Nonsense_Mutation	C	A	p.S261*
UCEC	TCGA-B5-A11N-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000361499.3	chr6	71232215:71232289:71233669:71233824:71234045:71234302,71232215:71232289:71233669:71233824:71234633:71234894,	71233670	71233824	71233777	71233777	Nonsense_Mutation	C	A	p.S404*
UCEC	TCGA-AP-A051-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71234984	71234984	Nonsense_Mutation	C	T	p.R537*
UCEC	TCGA-AP-A051-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71234984	71234984	Nonsense_Mutation	C	T	p.R537*
UCEC	TCGA-B5-A11E-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508408	71508408	Nonsense_Mutation	G	T	p.E182*
UCEC	TCGA-B5-A0JY-01	CD109	ENST00000437994.2,ENST00000287097.5	chr6	74432973:74433002:74440066:74440297:74446105:74446231,	74440067	74440297	74440163	74440163	Nonsense_Mutation	G	T	p.E125*
UCEC	TCGA-BS-A0UF-01	CD109	ENST00000437994.2,ENST00000287097.5	chr6	74432973:74433002:74440066:74440297:74446105:74446231,	74440067	74440297	74440163	74440163	Nonsense_Mutation	G	T	p.E125*
UCEC	TCGA-AP-A051-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797371	75797371	Nonsense_Mutation	G	A	p.R3035*
UCEC	TCGA-AP-A056-01	COL12A1	ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75875222:75875495:75884753:75885026:75887378:75887651,	75884754	75885026	75884892	75884892	Nonsense_Mutation	C	A	p.E858*
UCEC	TCGA-B5-A0JY-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124490	76124490	Nonsense_Mutation	G	A	p.R67*
UCEC	TCGA-A5-A0VP-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124490	76124490	Nonsense_Mutation	G	A	p.R67*
UCEC	TCGA-B5-A0JY-01	MYO6	ENST00000369977.3,ENST00000369985.4,ENST00000369981.3,ENST00000369975.1	chr6	76589759:76589837:76591405:76591535:76595720:76595811,	76591406	76591535	76591412	76591412	Nonsense_Mutation	G	T	p.E765*
UCEC	TCGA-AX-A0J0-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924320	82924320	Nonsense_Mutation	C	A	p.E610*
UCEC	TCGA-D1-A16X-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924473	82924473	Nonsense_Mutation	C	A	p.E559*
UCEC	TCGA-BS-A0UF-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2,ENST00000505222.1,ENST00000503631.1	chr6	82941434:82941559:82943875:82943972:82949882:82950282,	82943876	82943972	82943942	82943942	Nonsense_Mutation	C	A	p.E118*
UCEC	TCGA-B5-A11R-01	UBE3D	ENST00000237186.6,ENST00000369746.2,ENST00000369747.3,ENST00000505226.1,ENST00000509102.1	chr6	83754146:83754378:83763866:83763957:83767544:83767688,	83763867	83763957	83763937	83763937	Nonsense_Mutation	G	A	p.Q99*
UCEC	TCGA-BS-A0UV-01	SNAP91	ENST00000439399.2,ENST00000519779.1,ENST00000437520.1,ENST00000520213.1,ENST00000518312.1,ENST00000369694.2,ENST00000521616.1,ENST00000428679.2,ENST00000521485.1,ENST00000521931.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1	chr6	84368717:84368811:84371220:84371323:84372065:84372141,	84371221	84371323	84371276	84371276	Nonsense_Mutation	C	A	p.E133*
UCEC	TCGA-AX-A0J0-01	SNX14	ENST00000346348.3,ENST00000369627.2,ENST00000515216.1,ENST00000503491.1,ENST00000369635.2,ENST00000508980.1,ENST00000506182.1,ENST00000503608.1,ENST00000314673.3,ENST00000505648.1	chr6	86237981:86238080:86239909:86239993:86243316:86243398,	86239910	86239993	86239919	86239919	Nonsense_Mutation	C	A	p.E629*
UCEC	TCGA-D1-A17Q-01	SNX14	ENST00000513869.1	chr6	86267693:86267778:86275049:86275137:86281854:86281933,	86275050	86275137	86275106	86275106	Nonsense_Mutation	C	A	p.E165*
UCEC	TCGA-B5-A0JY-01	SLC35A1	ENST00000464978.1	chr6	88216099:88216166:88218137:88218314:88218758:88218893,88210875:88211028:88218137:88218314:88218758:88218893,	88218138	88218314	88218163	88218163	Nonsense_Mutation	G	T	p.E158*
UCEC	TCGA-BS-A0UV-01	ORC3	ENST00000392844.3,ENST00000257789.4	chr6	88304259:88304331:88311501:88311599:88313101:88313246,88304070:88304125:88311501:88311599:88313101:88313246,	88311502	88311599	88311549	88311549	Nonsense_Mutation	C	T	p.R43*
UCEC	TCGA-B5-A0JY-01	ORC3	ENST00000392844.3,ENST00000257789.4	chr6	88304259:88304331:88311501:88311599:88313101:88313246,88304070:88304125:88311501:88311599:88313101:88313246,	88311502	88311599	88311549	88311549	Nonsense_Mutation	C	T	p.R43*
UCEC	TCGA-BS-A0UV-01	AKIRIN2	ENST00000257787.5	chr6	88385577:88385649:88387535:88387685:88391337:88391481,	88387536	88387685	88387569	88387569	Nonsense_Mutation	C	A	p.E166*
UCEC	TCGA-AX-A05Z-01	RNGTT	ENST00000369485.4,ENST00000369475.3	chr6	89479492:89479593:89511282:89511351:89554075:89554198,	89511283	89511351	89511327	89511327	Nonsense_Mutation	C	A	p.E432*
UCEC	TCGA-AP-A056-01	FHL5	ENST00000541107.1,ENST00000326771.2	chr6	97053777:97053947:97058447:97058634:97063484:97064444,	97058448	97058634	97058496	97058496	Nonsense_Mutation	G	T	p.E185*
UCEC	TCGA-BS-A0UV-01	MMS22L	ENST00000369251.2,ENST00000508976.1,ENST00000275053.4,ENST00000509383.1	chr6	97702432:97702609:97711210:97711324:97715747:97715878,	97711211	97711324	97711270	97711270	Nonsense_Mutation	C	A	p.E295*
UCEC	TCGA-D1-A167-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99856028:99856147:99857048:99857220:99858616:99858840,	99857049	99857220	99857170	99857170	Nonsense_Mutation	C	T	p.W184*
UCEC	TCGA-AX-A0J1-01	PNISR	ENST00000466057.1	chr6	99860426:99860615:99862447:99864304:99873090:99873134,	99862448	99864304	99862500	99862500	Nonsense_Mutation	C	T	p.W12*
UCEC	TCGA-AX-A0J1-01	PNISR	ENST00000438806.1	chr6	99860426:99860615:99862447:99862566:99873090:99873134,	99862448	99862566	99862500	99862500	Nonsense_Mutation	C	T	p.W12*
UCEC	TCGA-BS-A0UV-01	USP45	ENST00000500704.2,ENST00000496090.2,ENST00000327681.6,ENST00000369233.2	chr6	99912955:99913012:99914547:99914639:99916412:99916494,	99914548	99914639	99914628	99914628	Nonsense_Mutation	C	A	p.E343*
UCEC	TCGA-AX-A05Z-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000507717.1,ENST00000329966.6,ENST00000327681.6,ENST00000369233.2,ENST00000472914.2,ENST00000506871.1	chr6	99936075:99936171:99936556:99936696:99951640:99951649,	99936557	99936696	99936646	99936646	Nonsense_Mutation	C	A	p.E177*
UCEC	TCGA-B5-A0JY-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000507717.1,ENST00000329966.6,ENST00000327681.6,ENST00000369233.2,ENST00000472914.2,ENST00000506871.1	chr6	99936075:99936171:99936556:99936696:99951640:99951649,	99936557	99936696	99936646	99936646	Nonsense_Mutation	C	A	p.E177*
UCEC	TCGA-BS-A0UF-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296563	101296563	Nonsense_Mutation	C	A	p.E88*
UCEC	TCGA-B5-A0JY-01	SCML4	ENST00000369020.3	chr6	108070887:108071017:108093375:108093590:108145329:108145490,	108093376	108093590	108093501	108093501	Nonsense_Mutation	G	A	p.R11*
UCEC	TCGA-BS-A0TC-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214773	108214773	Nonsense_Mutation	C	A	p.E389*
UCEC	TCGA-AP-A051-01	SNX3	ENST00000349379.5	chr6	108535701:108535826:108544153:108544249:108582029:108582448,	108544154	108544249	108544180	108544180	Nonsense_Mutation	G	A	p.R78*
UCEC	TCGA-A5-A0GP-01	SNX3	ENST00000349379.5	chr6	108535701:108535826:108544153:108544249:108582029:108582448,	108544154	108544249	108544222	108544222	Nonsense_Mutation	C	A	p.E64*
UCEC	TCGA-B5-A0JY-01	PPIL6	ENST00000518648.1	chr6	109740389:109740446:109748049:109748155:109752359:109752504,	109748050	109748155	109748083	109748083	Nonsense_Mutation	G	A	p.R200*
UCEC	TCGA-B5-A11E-01	PPIL6	ENST00000518648.1	chr6	109740389:109740446:109748049:109748155:109752359:109752504,	109748050	109748155	109748083	109748083	Nonsense_Mutation	G	A	p.R200*
UCEC	TCGA-B5-A0JY-01	FIG4	ENST00000230124.3,ENST00000454215.1	chr6	110036280:110036379:110037647:110037771:110048311:110048468,	110037648	110037771	110037744	110037744	Nonsense_Mutation	C	T	p.R88*
UCEC	TCGA-BS-A0UV-01	WASF1	ENST00000392586.1,ENST00000392587.2,ENST00000392589.1,ENST00000392588.1,ENST00000359451.2	chr6	110424580:110424760:110426609:110426782:110428279:110428397,	110426610	110426782	110426647	110426647	Nonsense_Mutation	C	A	p.E226*
UCEC	TCGA-BS-A0UV-01	CDC40	ENST00000368930.1,ENST00000368932.1,ENST00000307731.1,ENST00000606893.1	chr6	110540566:110540682:110540938:110541072:110547369:110547446,	110540939	110541072	110540948	110540948	Nonsense_Mutation	C	T	p.R406*
UCEC	TCGA-AX-A0J0-01	DDO	ENST00000368924.3	chr6	110725976:110726153:110729536:110729645:110734493:110734669,	110729537	110729645	110729610	110729610	Nonsense_Mutation	C	A	p.E98*
UCEC	TCGA-D1-A16X-01	SLC16A10	ENST00000368850.3,ENST00000368851.5	chr6	111527794:111527938:111540016:111540245:111543205:111544223,	111540017	111540245	111540097	111540097	Nonsense_Mutation	C	A	p.C389*
UCEC	TCGA-BS-A0TC-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111678216:111678328:111680024:111680217:111685055:111685181,	111680025	111680217	111680076	111680076	Nonsense_Mutation	C	A	p.E2341*
UCEC	TCGA-BS-A0UF-01	FYN	ENST00000496864.2,ENST00000476769.2,ENST00000368667.2,ENST00000354650.3	chr6	112017502:112017659:112021306:112021471:112024087:112024189,	112021307	112021471	112021364	112021364	Nonsense_Mutation	C	A	p.E269*
UCEC	TCGA-AX-A0J0-01	WISP3	ENST00000604763.1,ENST00000454589.1,ENST00000230529.5,ENST00000361714.1,ENST00000368664.3	chr6	112375537:112375608:112382193:112382491:112385957:112385989,	112382194	112382491	112382254	112382254	Nonsense_Mutation	G	T	p.E55*
UCEC	TCGA-B5-A0JY-01	WISP3	ENST00000604763.1,ENST00000454589.1,ENST00000230529.5,ENST00000361714.1,ENST00000368664.3	chr6	112375537:112375608:112382193:112382491:112385957:112385989,	112382194	112382491	112382254	112382254	Nonsense_Mutation	G	T	p.E55*
UCEC	TCGA-B5-A0JY-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949323	116949323	Nonsense_Mutation	C	T	p.R485*
UCEC	TCGA-BS-A0UF-01	GPRC6A	ENST00000530250.1,ENST00000368549.3	chr6	117128057:117128369:117130476:117130780:117149982:117150198,	117130477	117130780	117130776	117130776	Nonsense_Mutation	C	A	p.E67*
UCEC	TCGA-BS-A0TC-01	DCBLD1	ENST00000296955.8,ENST00000338728.5,ENST00000533453.1,ENST00000368503.4	chr6	117824946:117825142:117840978:117841113:117842687:117842739,	117840979	117841113	117841011	117841011	Nonsense_Mutation	G	T	p.E120*
UCEC	TCGA-D1-A17Q-01	TRDN	ENST00000334268.4,ENST00000398178.3	chr6	123590993:123591011:123592283:123592331:123594108:123594156,	123592284	123592331	123592329	123592329	Nonsense_Mutation	C	A	p.E559*
UCEC	TCGA-AP-A0LM-01	TRDN	ENST00000334268.4,ENST00000398178.3	chr6	123759207:123759267:123760088:123760148:123786050:123786128,	123760089	123760148	123760143	123760143	Nonsense_Mutation	C	A	p.E313*
UCEC	TCGA-B5-A0JY-01	ECHDC1	ENST00000528402.1	chr6	127637603:127637647:127648146:127648289:127664480:127664493,127636010:127636041:127648146:127648289:127664480:127664493,	127648147	127648289	127648254	127648254	Nonsense_Mutation	C	A	p.E92*
UCEC	TCGA-D1-A17Q-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128135074	128135074	Nonsense_Mutation	G	A	p.R238*
UCEC	TCGA-D1-A103-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150891	128150891	Nonsense_Mutation	C	A	p.E147*
UCEC	TCGA-AX-A0J0-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000495748.1,ENST00000368207.3,ENST00000532331.1	chr6	128563665:128563747:128643183:128643455:128718710:128718762,	128643184	128643455	128643330	128643330	Nonsense_Mutation	C	A	p.G117*
UCEC	TCGA-A5-A0GP-01	ARHGAP18	ENST00000368149.2	chr6	129950497:129950667:129955186:129955250:129959538:129959774,	129955187	129955250	129955211	129955211	Nonsense_Mutation	C	A	p.E198*
UCEC	TCGA-BS-A0UV-01	AKAP7	ENST00000368123.4,ENST00000541650.1,ENST00000431975.2	chr6	131490252:131490413:131520600:131520713:131540800:131540890,	131520601	131520713	131520624	131520624	Nonsense_Mutation	G	T	p.E183*
UCEC	TCGA-D1-A17Q-01	AKAP7	ENST00000368123.4,ENST00000431975.2	chr6	131520600:131520713:131540800:131540948:131602669:131603083,	131540801	131540948	131540861	131540861	Nonsense_Mutation	G	T	p.E233*
UCEC	TCGA-B5-A0JY-01	MED23	ENST00000354577.4,ENST00000368068.3,ENST00000540546.1,ENST00000368053.4,ENST00000539158.1,ENST00000403834.3,ENST00000368060.3,ENST00000368058.1	chr6	131927618:131927764:131929067:131929211:131931185:131931227,	131929068	131929211	131929076	131929076	Nonsense_Mutation	C	A	p.E405*
UCEC	TCGA-AX-A0J0-01	ENPP1	ENST00000360971.2,ENST00000459624.1,ENST00000513998.1	chr6	132189157:132189266:132190497:132190629:132193209:132193241,	132190498	132190629	132190590	132190590	Nonsense_Mutation	C	T	p.R456*
UCEC	TCGA-D1-A17Q-01	ALDH8A1	ENST00000265605.2,ENST00000367845.2	chr6	135253913:135254170:135260403:135260553:135263546:135263702,	135260404	135260553	135260455	135260455	Nonsense_Mutation	C	A	p.E181*
UCEC	TCGA-BS-A0UV-01	HBS1L	ENST00000367837.5,ENST00000529882.1,ENST00000524715.1	chr6	135323952:135323980:135360710:135360905:135371719:135371759,135323952:135323980:135360710:135360905:135363138:135363264,	135360711	135360905	135360726	135360726	Nonsense_Mutation	C	A	p.G139*
UCEC	TCGA-B5-A11R-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000327035.6,ENST00000457866.2,ENST00000367799.2	chr6	135763719:135763852:135768145:135768298:135769427:135769552,	135768146	135768298	135768164	135768164	Nonsense_Mutation	C	T	p.W587*
UCEC	TCGA-BG-A0VV-01	ECT2L	ENST00000401414.3,ENST00000423192.1,ENST00000367682.2	chr6	139134308:139134477:139135627:139135740:139159488:139159541,	139135628	139135740	139135716	139135716	Nonsense_Mutation	T	A	p.L52*
UCEC	TCGA-D1-A167-01	REPS1	ENST00000409812.2,ENST00000367663.4,ENST00000445570.1,ENST00000415951.2,ENST00000529597.1	chr6	139242200:139242261:139251113:139251235:139262471:139262626,	139251114	139251235	139251114	139251114	Nonsense_Mutation	C	A	p.G131*
UCEC	TCGA-D1-A167-01	REPS1	ENST00000483468.1	chr6	139242200:139242261:139247537:139251235:139262471:139262626,	139247538	139251235	139251114	139251114	Nonsense_Mutation	C	A	p.G131*
UCEC	TCGA-BS-A0UJ-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091489	143091489	Nonsense_Mutation	C	A	p.E1463*
UCEC	TCGA-AP-A051-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091558	143091558	Nonsense_Mutation	G	A	p.R1440*
UCEC	TCGA-D1-A103-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143093202	143093202	Nonsense_Mutation	G	A	p.R892*
UCEC	TCGA-D1-A17Q-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3,ENST00000427704.2,ENST00000440869.2	chr6	144086397:144086935:144093394:144093594:144095195:144095352,	144093395	144093594	144093492	144093492	Nonsense_Mutation	G	T	p.E444*
UCEC	TCGA-B5-A11E-01	UTRN	ENST00000367526.4,ENST00000367545.3	chr6	145157436:145157677:145160308:145160420:145161875:145161968,	145160309	145160420	145160324	145160324	Nonsense_Mutation	C	T	p.R3361*
UCEC	TCGA-AP-A059-01	GRM1	ENST00000282753.1,ENST00000355289.4,ENST00000361719.2,ENST00000392299.2,ENST00000492807.2,ENST00000507907.1	chr6	146625746:146625982:146673385:146673632:146678661:146678830,	146673386	146673632	146673403	146673403	Nonsense_Mutation	G	T	p.E402*
UCEC	TCGA-BS-A0TC-01	GRM1	ENST00000392299.2,ENST00000492807.2	chr6	146719904:146720835:146747694:146747779:146755042:146756021,146719904:146720835:146747694:146747779:146755007:146758731,	146747695	146747779	146747708	146747708	Nonsense_Mutation	G	T	p.E892*
UCEC	TCGA-AP-A056-01	SASH1	ENST00000367467.3	chr6	148808749:148808851:148835459:148835592:148840682:148841029,	148835460	148835592	148835568	148835568	Nonsense_Mutation	G	T	p.E280*
UCEC	TCGA-BS-A0UF-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700405	149700405	Nonsense_Mutation	C	T	p.R452*
UCEC	TCGA-B5-A0JY-01	TAB2	ENST00000286332.5,ENST00000470466.1,ENST00000367456.1,ENST00000538427.1,ENST00000536230.1	chr6	149718739:149718900:149719104:149719198:149720239:149720320,	149719105	149719198	149719195	149719195	Nonsense_Mutation	C	T	p.R619*
UCEC	TCGA-AX-A05Z-01	KATNA1	ENST00000367411.2,ENST00000444282.1,ENST00000335647.5,ENST00000420200.1,ENST00000494504.1	chr6	149924499:149924509:149925796:149925918:149944238:149944247,	149925797	149925918	149925801	149925801	Nonsense_Mutation	G	A	p.R207*
UCEC	TCGA-B5-A0JY-01	LATS1	ENST00000392273.3	chr6	150016209:150016357:150022914:150023402:150038984:150039170,	150022915	150023402	150022965	150022965	Nonsense_Mutation	C	A	p.E100*
UCEC	TCGA-B5-A0JY-01	LATS1	ENST00000392273.3	chr6	150016209:150016357:150022914:150023402:150038984:150039170,	150022915	150023402	150023019	150023019	Nonsense_Mutation	G	A	p.R82*
UCEC	TCGA-BS-A0UV-01	LATS1	ENST00000392273.3	chr6	150016209:150016357:150022914:150023402:150038984:150039170,	150022915	150023402	150023019	150023019	Nonsense_Mutation	G	A	p.R82*
UCEC	TCGA-D1-A17Q-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670334	151670334	Nonsense_Mutation	G	T	p.E270*
UCEC	TCGA-D1-A16X-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670763	151670763	Nonsense_Mutation	G	T	p.E413*
UCEC	TCGA-B5-A0JY-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671528	151671528	Nonsense_Mutation	G	T	p.E668*
UCEC	TCGA-AP-A059-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673181	151673181	Nonsense_Mutation	G	T	p.E1219*
UCEC	TCGA-AP-A0LM-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673457	151673457	Nonsense_Mutation	G	T	p.E1311*
UCEC	TCGA-BS-A0TC-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152563374:152563575:152565671:152565791:152570295:152570397,	152565672	152565791	152565761	152565761	Nonsense_Mutation	C	A	p.E6535*
UCEC	TCGA-AX-A05Z-01	SYNE1	ENST00000489156.1	chr6	152602941:152603115:152605112:152605319:152614722:152614884,	152605113	152605319	152605163	152605163	Nonsense_Mutation	G	A	p.R6053*
UCEC	TCGA-AX-A05Z-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152602941:152603115:152605112:152605307:152614722:152614884,	152605113	152605307	152605163	152605163	Nonsense_Mutation	G	A	p.R6053*
UCEC	TCGA-AX-A0J0-01	SYNE1	ENST00000367255.5,ENST00000265368.4,ENST00000448038.1,ENST00000471834.1,ENST00000423061.1	chr6	152679507:152679672:152680449:152680593:152683304:152683349,	152680450	152680593	152680545	152680545	Nonsense_Mutation	C	A	p.E3450*
UCEC	TCGA-AP-A051-01	SYNE1	ENST00000367248.3,ENST00000448038.1,ENST00000423061.1	chr6	152832145:152832238:152832705:152832726:152841593:152841677,	152832706	152832726	152832714	152832714	Nonsense_Mutation	C	A	p.G108*
UCEC	TCGA-AP-A0LM-01	FBXO5	ENST00000367241.3,ENST00000229758.3	chr6	153291663:153292549:153293406:153293589:153294180:153294271,	153293407	153293589	153293427	153293427	Nonsense_Mutation	G	A	p.R358*
UCEC	TCGA-D1-A0ZS-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157517298:157517449:157519944:157520041:157521838:157522622,	157519945	157520041	157520006	157520006	Nonsense_Mutation	G	T	p.G1341*
UCEC	TCGA-BS-A0UV-01	RSPH3	ENST00000252655.1	chr6	159403516:159403720:159414870:159414958:159420466:159420813,159407311:159407453:159414870:159414958:159420466:159420638,	159414871	159414958	159414906	159414906	Nonsense_Mutation	G	A	p.R199*
UCEC	TCGA-DI-A0WH-01	PNLDC1	ENST00000275275.5,ENST00000610273.1	chr6	160221305:160221415:160221704:160221861:160222144:160222218,	160221705	160221861	160221854	160221854	Nonsense_Mutation	C	T	p.Q32*
UCEC	TCGA-DI-A0WH-01	PNLDC1	ENST00000392167.3	chr6	160221305:160221415:160221803:160221861:160222144:160222218,	160221804	160221861	160221854	160221854	Nonsense_Mutation	C	T	p.Q32*
UCEC	TCGA-D1-A167-01	PLG	ENST00000308192.9,ENST00000467466.1	chr6	161159569:161159644:161160099:161160240:161162342:161162400,	161160100	161160240	161160209	161160209	Nonsense_Mutation	C	T	p.R663*
UCEC	TCGA-B5-A11E-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470619	161470619	Nonsense_Mutation	G	T	p.E439*
UCEC	TCGA-AP-A059-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170626674	170626674	Nonsense_Mutation	G	T	p.E66*
UCEC	TCGA-B5-A11E-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170627241	170627241	Nonsense_Mutation	G	T	p.E255*
UCEC	TCGA-AP-A051-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170627637	170627637	Nonsense_Mutation	C	T	p.Q387*
UCEC	TCGA-AP-A0LM-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1	chr7	624144:624205:635782:635941:645829:645876,	635783	635941	635853	635853	Nonsense_Mutation	G	A	p.R74*
UCEC	TCGA-B5-A11E-01	NUDT1	ENST00000343985.4,ENST00000397048.1,ENST00000397049.1	chr7	2282559:2282610:2284197:2284361:2289491:2289637,2282559:2282683:2284197:2284361:2289491:2289637,	2284198	2284361	2284282	2284282	Nonsense_Mutation	C	T	p.R48*
UCEC	TCGA-AX-A0J0-01	SDK1	ENST00000404826.2,ENST00000389531.3	chr7	4006949:4007066:4008888:4009056:4011097:4011200,	4008889	4009056	4008942	4008942	Nonsense_Mutation	G	T	p.E534*
UCEC	TCGA-D1-A17Q-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5402280:5402456:5410005:5410995:5413685:5414112,	5410006	5410995	5410351	5410351	Nonsense_Mutation	C	A	p.E1292*
UCEC	TCGA-BS-A0UV-01	C7orf26	ENST00000472693.1,ENST00000344417.5	chr7	6634065:6634231:6639459:6639987:6641731:6641771,	6639460	6639987	6639489	6639489	Nonsense_Mutation	G	T	p.E204*
UCEC	TCGA-BG-A0LX-01	ZNF12	ENST00000405858.1,ENST00000342651.5,ENST00000404360.1	chr7	6732232:6732334:6736969:6737065:6737315:6737442,	6736970	6737065	6737008	6737008	Nonsense_Mutation	C	A	p.G66*
UCEC	TCGA-BS-A0TC-01	RSPH10B2	ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6815987:6816177:6819240:6819355:6820958:6821107,6815987:6816177:6819240:6819355:6820439:6820519,	6819241	6819355	6819348	6819348	Nonsense_Mutation	G	T	p.E508*
UCEC	TCGA-AP-A056-01	COL28A1	ENST00000399429.3,ENST00000435823.1,ENST00000444268.1	chr7	7472262:7472331:7476025:7476094:7477024:7477066,	7476026	7476094	7476037	7476037	Nonsense_Mutation	G	A	p.R617*
UCEC	TCGA-B5-A0JY-01	COL28A1	ENST00000399429.3,ENST00000435823.1,ENST00000444268.1	chr7	7472262:7472331:7476025:7476094:7477024:7477066,	7476026	7476094	7476037	7476037	Nonsense_Mutation	G	A	p.R617*
UCEC	TCGA-AX-A05Z-01	COL28A1	ENST00000399429.3,ENST00000435823.1,ENST00000444268.1	chr7	7472262:7472331:7476025:7476094:7477024:7477066,	7476026	7476094	7476037	7476037	Nonsense_Mutation	G	A	p.R617*
UCEC	TCGA-AP-A0LM-01	RPA3	ENST00000396682.2,ENST00000223129.4	chr7	7677494:7677603:7678700:7678775:7679950:7680208,	7678701	7678775	7678706	7678706	Nonsense_Mutation	C	A	p.E57*
UCEC	TCGA-AP-A051-01	GLCCI1	ENST00000489405.1,ENST00000470583.1	chr7	8043537:8043689:8062112:8062199:8095065:8095179,	8062113	8062199	8062188	8062188	Nonsense_Mutation	C	T	p.Q229*
UCEC	TCGA-BS-A0UF-01	ICA1	ENST00000447326.1,ENST00000407906.1,ENST00000402384.3,ENST00000430867.1,ENST00000422063.2,ENST00000317367.5,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7,ENST00000339809.6	chr7	8258108:8258133:8260904:8261028:8268230:8268303,	8260905	8261028	8260990	8260990	Nonsense_Mutation	G	A	p.R99*
UCEC	TCGA-AP-A056-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022148	11022148	Nonsense_Mutation	G	T	p.E88*
UCEC	TCGA-B5-A11H-01	PHF14	ENST00000470665.1,ENST00000445996.2,ENST00000423760.2	chr7	11101590:11101712:11150976:11151094:11209042:11209117,	11150977	11151094	11151056	11151056	Nonsense_Mutation	G	T	p.G912*
UCEC	TCGA-B5-A0JY-01	ETV1	ENST00000405218.2,ENST00000403685.1,ENST00000399357.3,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000343495.5	chr7	13940362:13940464:13946054:13946224:13949256:13949325,	13946055	13946224	13946090	13946090	Nonsense_Mutation	G	A	p.R359*
UCEC	TCGA-AP-A0LM-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975515	13975515	Nonsense_Mutation	A	T	p.Y124*
UCEC	TCGA-D1-A16X-01	ANKMY2	ENST00000306999.2,ENST00000447802.1	chr7	16644345:16644474:16649254:16649390:16650173:16650388,	16649255	16649390	16649278	16649278	Nonsense_Mutation	G	A	p.R287*
UCEC	TCGA-AX-A05Z-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409076.2	chr7	17833387:17833916:17836449:17836562:17838312:17838381,	17836450	17836562	17836501	17836501	Nonsense_Mutation	G	A	p.R859*
UCEC	TCGA-BS-A0UF-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000401921.1,ENST00000523867.1,ENST00000461159.2	chr7	18688088:18688306:18705835:18706099:18767202:18767380,	18705836	18706099	18706067	18706067	Nonsense_Mutation	G	T	p.E567*
UCEC	TCGA-D1-A17Q-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198624	20198624	Nonsense_Mutation	C	A	p.E454*
UCEC	TCGA-B5-A0JY-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20744346:20744430:20762638:20762842:20766662:20766763,	20762639	20762842	20762822	20762822	Nonsense_Mutation	G	T	p.E424*
UCEC	TCGA-AP-A059-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21659573:21659696:21675488:21675713:21677228:21677320,	21675489	21675713	21675657	21675657	Nonsense_Mutation	C	T	p.R1562*
UCEC	TCGA-D1-A17Q-01	IL6	ENST00000406575.1,ENST00000404625.1,ENST00000426291.1,ENST00000258743.5	chr7	22766858:22766900:22767062:22767253:22768311:22768425,	22767063	22767253	22767143	22767143	Nonsense_Mutation	G	T	p.E34*
UCEC	TCGA-D1-A17Q-01	IL6	ENST00000401630.3	chr7	22766858:22766900:22767131:22767253:22768311:22768425,	22767132	22767253	22767143	22767143	Nonsense_Mutation	G	T	p.E34*
UCEC	TCGA-AP-A051-01	GPNMB	ENST00000381990.2,ENST00000258733.4,ENST00000539136.1	chr7	23296510:23296684:23299598:23299757:23300074:23300392,	23299599	23299757	23299622	23299622	Nonsense_Mutation	C	T	p.R189*
UCEC	TCGA-B5-A0JY-01	CHN2	ENST00000409964.2,ENST00000474070.1,ENST00000439384.1,ENST00000435288.2,ENST00000412536.1,ENST00000409350.1,ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000409922.1,ENST00000546235.1	chr7	29407547:29407603:29433294:29433326:29437988:29438101,	29433295	29433326	29433323	29433323	Nonsense_Mutation	G	T	p.E42*
UCEC	TCGA-BS-A0TC-01	CHN2	ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000546235.1	chr7	29440315:29440444:29519894:29519972:29535567:29535652,	29519895	29519972	29519910	29519910	Nonsense_Mutation	C	T	p.R198*
UCEC	TCGA-AP-A0LM-01	WIPF3	ENST00000409123.1,ENST00000409290.1,ENST00000242140.5	chr7	29874340:29874430:29915445:29915578:29918624:29918756,	29915446	29915578	29915470	29915470	Nonsense_Mutation	C	T	p.R39*
UCEC	TCGA-B5-A0JY-01	SCRN1	ENST00000242059.5,ENST00000409497.1,ENST00000434476.2,ENST00000426154.1,ENST00000425819.2	chr7	29976171:29976337:29980297:29980492:29983592:29983795,	29980298	29980492	29980430	29980430	Nonsense_Mutation	C	A	p.E223*
UCEC	TCGA-AP-A0LM-01	EEPD1	ENST00000242108.4,ENST00000534978.1,ENST00000468591.1	chr7	36327247:36327386:36336601:36336796:36338615:36338801,	36336602	36336796	36336765	36336765	Nonsense_Mutation	G	A	p.W493*
UCEC	TCGA-AX-A05Z-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373756	36373756	Nonsense_Mutation	G	A	p.R339*
UCEC	TCGA-BS-A0UV-01	KIAA0895	ENST00000436884.1	chr7	36374654:36374787:36396510:36397199:36406524:36406810,36374654:36374787:36396510:36397199:36406312:36406522,36375762:36375906:36396510:36397199:36406524:36406810,36375762:36375906:36396510:36397199:36406719:36406780,	36396511	36397199	36396630	36396630	Nonsense_Mutation	C	A	p.E250*
UCEC	TCGA-B5-A0JY-01	VPS41	ENST00000395969.2,ENST00000265745.9	chr7	38908745:38908853:38937690:38937729:38948753:38948774,	38937691	38937729	38937711	38937711	Nonsense_Mutation	C	A	p.E14*
UCEC	TCGA-AP-A0LM-01	POLD2	ENST00000463464.1,ENST00000456038.1,ENST00000406581.2,ENST00000433715.1,ENST00000452185.1,ENST00000418438.1,ENST00000461116.1,ENST00000470867.1,ENST00000223361.3	chr7	44157239:44157341:44157541:44157663:44161432:44161504,	44157542	44157663	44157611	44157611	Nonsense_Mutation	G	T	p.C91*
UCEC	TCGA-AP-A0LM-01	YKT6	ENST00000223369.2	chr7	44247734:44247797:44250621:44250723:44251845:44252194,	44250622	44250723	44250649	44250649	Nonsense_Mutation	C	T	p.R163*
UCEC	TCGA-BS-A0UV-01	MYO1G	ENST00000495831.1,ENST00000258787.7	chr7	45011713:45011824:45014772:45014826:45015082:45015248,	45014773	45014826	45014795	45014795	Nonsense_Mutation	C	A	p.E202*
UCEC	TCGA-A5-A0GB-01	TBRG4	ENST00000361278.3,ENST00000395655.4	chr7	45141945:45142090:45142931:45143042:45145039:45145077,	45142932	45143042	45143024	45143024	Nonsense_Mutation	G	A	p.Q362*
UCEC	TCGA-AX-A0J0-01	IGFBP3	ENST00000428530.1,ENST00000417621.1,ENST00000381086.5,ENST00000275521.6,ENST00000381083.4	chr7	45954403:45954544:45956146:45956266:45956811:45956996,	45956147	45956266	45956251	45956251	Nonsense_Mutation	C	A	p.E222*
UCEC	TCGA-AX-A05Z-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000355730.3	chr7	47336679:47336811:47341783:47341870:47342547:47343182,	47341784	47341870	47341790	47341790	Nonsense_Mutation	C	A	p.E1180*
UCEC	TCGA-D1-A103-01	ABCA13	ENST00000484268.1,ENST00000453246.1,ENST00000435803.1	chr7	48416038:48416169:48427418:48427556:48428636:48428817,	48427419	48427556	48427540	48427540	Nonsense_Mutation	G	T	p.E85*
UCEC	TCGA-AP-A056-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531095	50531095	Nonsense_Mutation	C	A	p.E307*
UCEC	TCGA-AX-A0J1-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50534911:50535013:50537770:50537869:50544321:50544341,	50537771	50537869	50537794	50537794	Nonsense_Mutation	C	A	p.G373*
UCEC	TCGA-B5-A11N-01	GRB10	ENST00000401949.1,ENST00000402578.1,ENST00000439599.1,ENST00000402497.1,ENST00000335866.3,ENST00000398810.2,ENST00000398812.2,ENST00000403097.1,ENST00000407526.1,ENST00000406641.1,ENST00000357271.5	chr7	50660575:50660795:50663133:50663227:50671694:50671782,	50663134	50663227	50663160	50663160	Nonsense_Mutation	T	A	p.K538*
UCEC	TCGA-AP-A056-01	COBL	ENST00000265136.7,ENST00000441453.1,ENST00000395540.2,ENST00000452534.1	chr7	51203854:51204028:51251798:51251896:51258546:51258640,	51251799	51251896	51251847	51251847	Nonsense_Mutation	C	A	p.E164*
UCEC	TCGA-BS-A0UF-01	COBL	ENST00000265136.7,ENST00000441453.1,ENST00000395542.2,ENST00000449281.1,ENST00000395540.2	chr7	51258694:51258775:51261075:51261286:51287437:51287641,	51261076	51261286	51261126	51261126	Nonsense_Mutation	C	A	p.E136*
UCEC	TCGA-D1-A103-01	AUTS2	ENST00000443672.1,ENST00000342771.4,ENST00000498384.1	chr7	70236559:70236630:70239013:70239085:70240342:70240372,	70239014	70239085	70239081	70239081	Nonsense_Mutation	C	T	p.R160*
UCEC	TCGA-AP-A056-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892158	72892158	Nonsense_Mutation	C	A	p.E545*
UCEC	TCGA-BS-A0TC-01	ELN	ENST00000252034.7,ENST00000380576.5,ENST00000358929.4,ENST00000380562.4,ENST00000320492.7,ENST00000414324.1,ENST00000320399.6,ENST00000458204.1	chr7	73477950:73478025:73480023:73480062:73481061:73481106,73477950:73478025:73480023:73480062:73480273:73480327,	73480024	73480062	73480061	73480061	Nonsense_Mutation	C	A	p.Y677*
UCEC	TCGA-AP-A0LM-01	RFC2	ENST00000491206.1,ENST00000479105.2,ENST00000470266.1,ENST00000493156.2,ENST00000480432.1,ENST00000352131.3,ENST00000463194.1,ENST00000055077.3,ENST00000494019.1,ENST00000497430.1	chr7	73653266:73653318:73654267:73654425:73657475:73657576,	73654268	73654425	73654306	73654306	Nonsense_Mutation	C	A	p.E219*
UCEC	TCGA-B5-A11H-01	NCF1	ENST00000398421.2,ENST00000455062.1	chr7	74195125:74195181:74197281:74197975:74199527:74199607,	74197282	74197975	74197397	74197397	Nonsense_Mutation	C	T	p.R109*
UCEC	TCGA-BS-A0TJ-01	GTF2IRD2B	ENST00000394939.3,ENST00000430511.2,ENST00000423666.1,ENST00000472837.1,ENST00000312575.7,ENST00000356115.5	chr7	74550810:74550867:74552591:74552657:74554757:74554835,	74552592	74552657	74552657	74552657	Nonsense_Mutation	G	T	p.G291*
UCEC	TCGA-AX-A0J1-01	CCDC146	ENST00000285871.4	chr7	76891437:76891624:76903010:76903106:76903798:76903969,	76903011	76903106	76903056	76903056	Nonsense_Mutation	C	T	p.R407*
UCEC	TCGA-B5-A0JY-01	CCDC146	ENST00000415740.2,ENST00000285871.4,ENST00000431197.1	chr7	76908068:76908157:76908253:76908418:76909745:76909970,	76908254	76908418	76908354	76908354	Nonsense_Mutation	G	T	p.E544*
UCEC	TCGA-AP-A056-01	CCDC146	ENST00000478101.1,ENST00000461259.1,ENST00000415740.2,ENST00000285871.4,ENST00000431197.1	chr7	76916756:76916894:76922268:76922517:76923979:76924232,	76922269	76922517	76922473	76922473	Nonsense_Mutation	C	T	p.R874*
UCEC	TCGA-AX-A05Z-01	PTPN12	ENST00000460731.1	chr7	77166870:77166962:77200394:77200503:77210743:77210782,	77200395	77200503	77200461	77200461	Nonsense_Mutation	G	T	p.E56*
UCEC	TCGA-B5-A0JY-01	PTPN12	ENST00000460731.1	chr7	77166870:77166962:77200394:77200503:77210743:77210782,	77200395	77200503	77200464	77200464	Nonsense_Mutation	G	T	p.E57*
UCEC	TCGA-B5-A11E-01	MAGI2	ENST00000354212.4,ENST00000519748.1,ENST00000522391.1,ENST00000419488.1	chr7	77755010:77755154:77756513:77756733:77762205:77762377,	77756514	77756733	77756687	77756687	Nonsense_Mutation	G	A	p.R1084*
UCEC	TCGA-D1-A103-01	MAGI2	ENST00000354212.4,ENST00000519748.1,ENST00000522391.1,ENST00000419488.1	chr7	77755010:77755154:77756513:77756733:77762205:77762377,	77756514	77756733	77756687	77756687	Nonsense_Mutation	G	A	p.R1084*
UCEC	TCGA-D1-A167-01	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394555	86394555	Nonsense_Mutation	G	T	p.E32*
UCEC	TCGA-AP-A0LM-01	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394651	86394651	Nonsense_Mutation	C	T	p.R64*
UCEC	TCGA-AX-A0J1-01	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394651	86394651	Nonsense_Mutation	C	T	p.R64*
UCEC	TCGA-AP-A0LM-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415892	86415892	Nonsense_Mutation	G	T	p.E262*
UCEC	TCGA-B5-A11N-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468379	86468379	Nonsense_Mutation	G	T	p.E517*
UCEC	TCGA-AX-A0J0-01	KIAA1324L	ENST00000490995.1,ENST00000474609.1,ENST00000394714.2,ENST00000297222.6,ENST00000450689.2,ENST00000423294.1,ENST00000416314.1	chr7	86542341:86542520:86544038:86544176:86547757:86547860,	86544039	86544176	86544093	86544093	Nonsense_Mutation	C	A	p.E520*
UCEC	TCGA-BS-A0UV-01	KIAA1324L	ENST00000425689.1,ENST00000398276.2,ENST00000444627.1,ENST00000450689.2	chr7	86574265:86574362:86577042:86577238:86594219:86594340,	86577043	86577238	86577209	86577209	Nonsense_Mutation	C	A	p.E114*
UCEC	TCGA-AP-A059-01	KIAA1324L	ENST00000425689.1,ENST00000398276.2,ENST00000444627.1,ENST00000450689.2	chr7	86574265:86574362:86577042:86577238:86594219:86594340,	86577043	86577238	86577218	86577218	Nonsense_Mutation	C	A	p.E111*
UCEC	TCGA-AX-A0J0-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87031449:87031618:87032450:87032597:87035603:87035810,	87032451	87032597	87032585	87032585	Nonsense_Mutation	T	A	p.R1174*
UCEC	TCGA-AX-A0J0-01	ABCB4	ENST00000358400.3,ENST00000453593.1	chr7	87041208:87041349:87042932:87043033:87046627:87046831,87038551:87038708:87042932:87043033:87046627:87046831,	87042933	87043033	87043015	87043015	Nonsense_Mutation	C	A	p.E901*
UCEC	TCGA-AP-A059-01	ABCB1	ENST00000543898.1,ENST00000265724.3,ENST00000482527.1	chr7	87175264:87175340:87178663:87178834:87179166:87179370,	87178664	87178834	87178786	87178786	Nonsense_Mutation	G	A	p.Q535*
UCEC	TCGA-B5-A11N-01	SLC25A40	ENST00000429674.1,ENST00000341119.5	chr7	87477167:87477292:87479195:87479263:87483518:87483625,	87479196	87479263	87479242	87479242	Nonsense_Mutation	G	A	p.R96*
UCEC	TCGA-AX-A0J0-01	DBF4	ENST00000430279.1,ENST00000265728.1,ENST00000413643.1	chr7	87507367:87507540:87514293:87514473:87516158:87516209,	87514294	87514473	87514427	87514427	Nonsense_Mutation	C	A	p.S118*
UCEC	TCGA-AX-A0J0-01	STEAP4	ENST00000380079.4	chr7	87910229:87910394:87911955:87912483:87913128:87913205,	87911956	87912483	87911988	87911988	Nonsense_Mutation	G	A	p.R318*
UCEC	TCGA-AP-A059-01	STEAP4	ENST00000380079.4	chr7	87910229:87910394:87911955:87912483:87913128:87913205,	87911956	87912483	87912378	87912378	Nonsense_Mutation	C	A	p.E188*
UCEC	TCGA-B5-A0JY-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91623934:91624090:91624916:91625114:91630161:91632549,	91624917	91625114	91625058	91625058	Nonsense_Mutation	G	T	p.E292*
UCEC	TCGA-B5-A0JY-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91691587:91691800:91694544:91694777:91695740:91695860,	91694545	91694777	91694548	91694548	Nonsense_Mutation	T	G	p.L1994*
UCEC	TCGA-BS-A0TC-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91700218:91700323:91706168:91706321:91707009:91707189,	91706169	91706321	91706314	91706314	Nonsense_Mutation	T	G	p.L2253*
UCEC	TCGA-AX-A0J0-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91709428	91709428	Nonsense_Mutation	G	T	p.E2661*
UCEC	TCGA-B5-A11E-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000463118.1,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91732000:91732140:91734991:91735077:91736606:91736736,	91734992	91735077	91735020	91735020	Nonsense_Mutation	C	T	p.R3787*
UCEC	TCGA-D1-A15X-01	KRIT1	ENST00000394505.2,ENST00000340022.2,ENST00000394503.2,ENST00000394507.1,ENST00000412043.2	chr7	91864121:91864237:91864716:91864960:91865726:91865856,	91864717	91864960	91864911	91864911	Nonsense_Mutation	G	A	p.R179*
UCEC	TCGA-AP-A0LM-01	FAM133B	ENST00000438306.1,ENST00000427372.1,ENST00000445716.1	chr7	92191595:92191682:92195327:92195375:92199136:92199229,	92195328	92195375	92195372	92195372	Nonsense_Mutation	G	A	p.R205*
UCEC	TCGA-AP-A0LM-01	FAM133B	ENST00000415397.2	chr7	92191595:92191682:92195323:92195375:92199136:92199229,	92195324	92195375	92195372	92195372	Nonsense_Mutation	G	A	p.R205*
UCEC	TCGA-AX-A05Z-01	PON1	ENST00000433729.1	chr7	94946045:94946101:94947634:94947705:94953713:94953788,	94947635	94947705	94947668	94947668	Nonsense_Mutation	C	A	p.E38*
UCEC	TCGA-B5-A0JY-01	SLC25A13	ENST00000416240.2,ENST00000265631.5	chr7	95838149:95838289:95864113:95864229:95906507:95906650,	95864114	95864229	95864213	95864213	Nonsense_Mutation	C	A	p.E77*
UCEC	TCGA-BS-A0UV-01	ASNS	ENST00000455086.1	chr7	97488553:97488710:97493570:97493808:97501662:97501706,	97493571	97493808	97493580	97493580	Nonsense_Mutation	C	A	p.E160*
UCEC	TCGA-B5-A11E-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97822547	97822547	Nonsense_Mutation	G	T	p.E924*
UCEC	TCGA-AP-A059-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000479975.1,ENST00000476659.1,ENST00000490842.1	chr7	97852342:97852482:97852973:97853030:97854112:97854192,	97852974	97853030	97852982	97852982	Nonsense_Mutation	G	T	p.C913*
UCEC	TCGA-AX-A0J1-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000479975.1,ENST00000476659.1,ENST00000490842.1	chr7	97852342:97852482:97852973:97853030:97854112:97854192,	97852974	97853030	97852982	97852982	Nonsense_Mutation	G	T	p.C913*
UCEC	TCGA-B5-A11E-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98524789:98524989:98527611:98527829:98528255:98528453,	98527612	98527829	98527692	98527692	Nonsense_Mutation	G	T	p.G1086*
UCEC	TCGA-AX-A063-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98648979:98649064:98649827:98650069:98652412:98652488,	98649828	98650069	98649897	98649897	Nonsense_Mutation	G	A	p.R218*
UCEC	TCGA-D1-A16X-01	KPNA7	ENST00000327442.6	chr7	98775542:98775689:98779505:98779688:98782551:98782785,	98779506	98779688	98779667	98779667	Nonsense_Mutation	C	A	p.E386*
UCEC	TCGA-AP-A0LM-01	ZNF655	ENST00000467680.1	chr7	99158155:99158318:99159510:99160117:99161485:99162328,	99159511	99160117	99160005	99160005	Nonsense_Mutation	C	T	p.R86*
UCEC	TCGA-BS-A0UF-01	CYP3A43	ENST00000312017.5,ENST00000222382.5,ENST00000434806.1,ENST00000354829.2	chr7	99436742:99436795:99441765:99441865:99445110:99445224,	99441766	99441865	99441836	99441836	Nonsense_Mutation	G	T	p.E97*
UCEC	TCGA-D1-A17Q-01	TRIM4	ENST00000355947.2,ENST00000354241.5,ENST00000447480.1,ENST00000349062.2	chr7	99501198:99501221:99506204:99506435:99507187:99507221,	99506205	99506435	99506313	99506313	Nonsense_Mutation	C	A	p.E106*
UCEC	TCGA-B5-A0JY-01	COPS6	ENST00000426712.1,ENST00000474823.1,ENST00000303904.3,ENST00000418625.1	chr7	99688214:99688277:99688524:99688572:99688660:99688775,	99688525	99688572	99688570	99688570	Nonsense_Mutation	G	T	p.E178*
UCEC	TCGA-AP-A059-01	C7orf43	ENST00000456769.1,ENST00000457641.1,ENST00000316937.3	chr7	99754995:99755082:99755255:99755385:99755465:99755561,	99755256	99755385	99755322	99755322	Nonsense_Mutation	G	A	p.R191*
UCEC	TCGA-B5-A11E-01	GPC2	ENST00000471717.1,ENST00000292377.2	chr7	99772307:99772388:99773194:99773517:99773829:99773988,	99773195	99773517	99773398	99773398	Nonsense_Mutation	G	A	p.R149*
UCEC	TCGA-BS-A0UV-01	ZCWPW1	ENST00000490089.1,ENST00000490721.1,ENST00000471336.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100004316:100004421:100004850:100004926:100006161:100006282,	100004851	100004926	100004910	100004910	Nonsense_Mutation	C	A	p.E336*
UCEC	TCGA-D1-A17Q-01	FBXO24	ENST00000465843.1,ENST00000360609.2	chr7	100187599:100187698:100187796:100187938:100189289:100189525,	100187797	100187938	100187813	100187813	Nonsense_Mutation	C	A	p.S52*
UCEC	TCGA-D1-A17Q-01	FBXO24	ENST00000474649.1,ENST00000241071.6,ENST00000466053.1,ENST00000468962.1,ENST00000427939.2,ENST00000498195.1	chr7	100187599:100187698:100187796:100187980:100189289:100189469,	100187797	100187980	100187813	100187813	Nonsense_Mutation	C	A	p.S52*
UCEC	TCGA-BS-A0UF-01	PLOD3	ENST00000223127.3	chr7	100853636:100853725:100853812:100853954:100854871:100854953,	100853813	100853954	100853821	100853821	Nonsense_Mutation	G	A	p.R498*
UCEC	TCGA-D1-A174-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000393824.3	chr7	101740643:101740781:101747615:101747739:101754977:101755006,	101747616	101747739	101747648	101747648	Nonsense_Mutation	C	T	p.R147*
UCEC	TCGA-B5-A11E-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101754977:101755054:101758486:101758553:101801839:101801888,	101758487	101758553	101758501	101758501	Nonsense_Mutation	C	T	p.R208*
UCEC	TCGA-AP-A056-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101754977:101755054:101758486:101758553:101801839:101801888,	101758487	101758553	101758501	101758501	Nonsense_Mutation	C	T	p.R208*
UCEC	TCGA-BS-A0UV-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101754977:101755054:101758486:101758553:101801839:101801888,	101758487	101758553	101758501	101758501	Nonsense_Mutation	C	T	p.R208*
UCEC	TCGA-D1-A17Q-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101754977:101755054:101758486:101758553:101801839:101801888,	101758487	101758553	101758501	101758501	Nonsense_Mutation	C	T	p.R208*
UCEC	TCGA-D1-A16Y-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101754977:101755054:101758486:101758553:101801839:101801888,	101758487	101758553	101758501	101758501	Nonsense_Mutation	C	T	p.R208*
UCEC	TCGA-D1-A17Q-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2,ENST00000393824.3	chr7	101754977:101755054:101758486:101758553:101801839:101801888,	101758487	101758553	101758540	101758540	Nonsense_Mutation	G	T	p.E221*
UCEC	TCGA-B5-A11E-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000292538.4,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2	chr7	101801839:101801888:101813725:101813830:101821748:101821937,	101813726	101813830	101813741	101813741	Nonsense_Mutation	C	T	p.Q247*
UCEC	TCGA-BS-A0UF-01	PMPCB	ENST00000453466.1,ENST00000444457.1,ENST00000420236.2,ENST00000428154.1,ENST00000249269.4	chr7	102949398:102949542:102950761:102950922:102952089:102952175,	102950762	102950922	102950918	102950918	Nonsense_Mutation	G	T	p.E384*
UCEC	TCGA-D1-A17Q-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105099614:105099706:105103067:105103197:105105759:105105861,	105103068	105103197	105103129	105103129	Nonsense_Mutation	G	A	p.R566*
UCEC	TCGA-B5-A11N-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105099614:105099706:105103067:105103197:105105759:105105861,	105103068	105103197	105103129	105103129	Nonsense_Mutation	G	A	p.R566*
UCEC	TCGA-AP-A051-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111266	105111266	Nonsense_Mutation	C	A	p.E423*
UCEC	TCGA-AP-A051-01	PUS7	ENST00000481939.1	chr7	105108783:105108910:105111207:105111295:105112578:105112635,	105111208	105111295	105111266	105111266	Nonsense_Mutation	C	A	p.E423*
UCEC	TCGA-B5-A0JY-01	ATXN7L1	ENST00000472195.1,ENST00000474433.1,ENST00000419735.3,ENST00000477775.1	chr7	105254584:105255263:105260646:105260768:105264521:105264713,	105260647	105260768	105260699	105260699	Nonsense_Mutation	G	A	p.R489*
UCEC	TCGA-BS-A0UF-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509544	106509544	Nonsense_Mutation	C	A	p.S513*
UCEC	TCGA-BS-A0UV-01	PRKAR2B	ENST00000488792.1,ENST00000393613.2,ENST00000265717.4	chr7	106762396:106762449:106768656:106768740:106781291:106781398,	106768657	106768740	106768681	106768681	Nonsense_Mutation	C	T	p.Q141*
UCEC	TCGA-D1-A16X-01	PRKAR2B	ENST00000265717.4	chr7	106797428:106797494:106797630:106797769:106799893:106800034,	106797631	106797769	106797673	106797673	Nonsense_Mutation	C	T	p.R343*
UCEC	TCGA-D1-A16X-01	HBP1	ENST00000222574.4,ENST00000485846.1,ENST00000498408.1,ENST00000463202.1,ENST00000468410.1	chr7	106820362:106820507:106822817:106823046:106826245:106826387,	106822818	106823046	106822967	106822967	Nonsense_Mutation	G	T	p.E107*
UCEC	TCGA-BS-A0UF-01	SLC26A3	ENST00000340010.5	chr7	107412498:107412553:107414364:107414598:107415221:107415317,	107414365	107414598	107414595	107414595	Nonsense_Mutation	C	A	p.G593*
UCEC	TCGA-AP-A051-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107618491:107618612:107621053:107621256:107626466:107626530,	107621054	107621256	107621120	107621120	Nonsense_Mutation	G	T	p.C271*
UCEC	TCGA-D1-A167-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000486186.1,ENST00000437633.1,ENST00000494651.2	chr7	111368476:111368776:111372281:111372343:111376972:111377045,111368476:111368776:111372281:111372343:111375109:111375223,	111372282	111372343	111372325	111372325	Nonsense_Mutation	G	A	p.R1837*
UCEC	TCGA-AX-A0J1-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000486186.1,ENST00000437633.1,ENST00000494651.2	chr7	111368476:111368776:111372281:111372343:111376972:111377045,111368476:111368776:111372281:111372343:111375109:111375223,	111372282	111372343	111372325	111372325	Nonsense_Mutation	G	A	p.R1837*
UCEC	TCGA-AP-A059-01	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000431629.1,ENST00000427207.1	chr7	114563130:114563182:114582329:114582452:114619560:114619836,	114582330	114582452	114582421	114582421	Nonsense_Mutation	G	A	p.W62*
UCEC	TCGA-AX-A05Z-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411551:116411708:116411902:116412043:116414934:116415126,	116411903	116412043	116411995	116411995	Nonsense_Mutation	G	T	p.E1012*
UCEC	TCGA-AP-A0LM-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411902:116412043:116414934:116415165:116417442:116417523,	116414935	116415165	116414970	116414970	Nonsense_Mutation	C	T	p.R1040*
UCEC	TCGA-D1-A17Q-01	ST7	ENST00000487459.1,ENST00000393446.2,ENST00000393447.4,ENST00000490039.1,ENST00000446490.1,ENST00000432298.1,ENST00000393443.1,ENST00000393451.3,ENST00000323984.3,ENST00000393444.3,ENST00000489293.1,ENST00000265437.5,ENST00000422922.1,ENST00000393449.1	chr7	116778488:116778586:116810915:116811030:116829374:116829447,	116810916	116811030	116810958	116810958	Nonsense_Mutation	G	T	p.E336*
UCEC	TCGA-AX-A05Z-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117227792:117227887:117230406:117230493:117231987:117232711,	117230407	117230493	117230480	117230480	Nonsense_Mutation	G	T	p.E585*
UCEC	TCGA-BS-A0UF-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117254666:117254767:117267575:117267824:117282491:117282647,	117267576	117267824	117267694	117267694	Nonsense_Mutation	C	A	p.S1196*
UCEC	TCGA-AX-A0J0-01	TSPAN12	ENST00000450414.1,ENST00000222747.3,ENST00000415871.1	chr7	120428427:120428951:120446602:120446746:120450516:120450624,	120446603	120446746	120446662	120446662	Nonsense_Mutation	C	A	p.E185*
UCEC	TCGA-B5-A0JY-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000462699.1,ENST00000334010.7,ENST00000449022.2	chr7	121965530:121965635:121985627:121985735:122000841:122000874,	121985628	121985735	121985672	121985672	Nonsense_Mutation	G	A	p.R1190*
UCEC	TCGA-AX-A0J0-01	SLC13A1	ENST00000427975.1,ENST00000194130.2	chr7	122774463:122774583:122787212:122787364:122808427:122808476,	122787213	122787364	122787340	122787340	Nonsense_Mutation	G	A	p.R229*
UCEC	TCGA-D1-A17Q-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173176	126173176	Nonsense_Mutation	C	A	p.G754*
UCEC	TCGA-AP-A056-01	ARF5	ENST00000463733.1	chr7	127229136:127229217:127229538:127230191:127231016:127231142,	127229539	127230191	127230165	127230165	Nonsense_Mutation	G	T	p.E102*
UCEC	TCGA-D1-A17Q-01	SND1	ENST00000354725.3	chr7	127569240:127569382:127630999:127631109:127714553:127714674,	127631000	127631109	127631005	127631005	Nonsense_Mutation	G	T	p.E559*
UCEC	TCGA-AP-A059-01	RBM28	ENST00000223073.2,ENST00000415472.2	chr7	127964660:127964747:127965870:127965944:127970871:127970981,	127965871	127965944	127965930	127965930	Nonsense_Mutation	G	A	p.Q382*
UCEC	TCGA-AP-A059-01	PRRT4	ENST00000489835.2,ENST00000435512.1,ENST00000535159.1,ENST00000489517.1,ENST00000446477.2	chr7	127992502:127992732:127998734:127998854:127999202:127999307,	127998735	127998854	127998845	127998845	Nonsense_Mutation	C	T	p.W137*
UCEC	TCGA-B5-A0JY-01	CCDC136	ENST00000378685.4	chr7	128434747:128434822:128441239:128441527:128444703:128444815,	128441240	128441527	128441290	128441290	Nonsense_Mutation	G	T	p.E133*
UCEC	TCGA-B5-A0JY-01	CCDC136	ENST00000464832.1,ENST00000487361.1,ENST00000297788.4	chr7	128434747:128434822:128441239:128441563:128444703:128444815,	128441240	128441563	128441290	128441290	Nonsense_Mutation	G	T	p.E133*
UCEC	TCGA-A5-A0GP-01	CCDC136	ENST00000378685.4	chr7	128434747:128434822:128441239:128441527:128444703:128444815,	128441240	128441527	128441311	128441311	Nonsense_Mutation	G	T	p.E140*
UCEC	TCGA-A5-A0GP-01	CCDC136	ENST00000464832.1,ENST00000487361.1,ENST00000297788.4	chr7	128434747:128434822:128441239:128441563:128444703:128444815,	128441240	128441563	128441311	128441311	Nonsense_Mutation	G	T	p.E140*
UCEC	TCGA-BS-A0UF-01	TNPO3	ENST00000482320.1,ENST00000393245.1,ENST00000265388.5,ENST00000471234.1	chr7	128595141:128595439:128597277:128597369:128607333:128607446,	128597278	128597369	128597314	128597314	Nonsense_Mutation	G	A	p.R923*
UCEC	TCGA-AP-A051-01	SMO	ENST00000462420.1	chr7	128849129:128849238:128850203:128850389:128850805:128850954,128848599:128848692:128850203:128850389:128850805:128850954,	128850204	128850389	128850207	128850207	Nonsense_Mutation	T	A	p.C490*
UCEC	TCGA-AX-A05Z-01	CPA2	ENST00000222481.4,ENST00000487259.1	chr7	129910532:129910628:129912915:129913017:129914988:129915087,	129912916	129913017	129912925	129912925	Nonsense_Mutation	G	T	p.E132*
UCEC	TCGA-AX-A0J0-01	MKLN1	ENST00000352689.6,ENST00000494785.1,ENST00000458153.1,ENST00000421797.2	chr7	131122543:131122756:131128239:131128461:131130532:131130662,	131128240	131128461	131128390	131128390	Nonsense_Mutation	C	T	p.R442*
UCEC	TCGA-B5-A0JY-01	MKLN1	ENST00000498778.1	chr7	131151034:131151174:131155600:131155703:131163381:131163436,131151034:131151174:131155600:131155703:131172365:131172603,	131155601	131155703	131155689	131155689	Nonsense_Mutation	G	T	p.E673*
UCEC	TCGA-AX-A0J0-01	MKLN1	ENST00000498778.1	chr7	131151034:131151174:131155600:131155703:131163381:131163436,131151034:131151174:131155600:131155703:131172365:131172603,	131155601	131155703	131155701	131155701	Nonsense_Mutation	G	T	p.E677*
UCEC	TCGA-AP-A051-01	CHCHD3	ENST00000448878.1,ENST00000496427.1,ENST00000262570.5,ENST00000476546.1	chr7	132470285:132470421:132481202:132481338:132523158:132523229,	132481203	132481338	132481251	132481251	Nonsense_Mutation	G	T	p.C204*
UCEC	TCGA-D1-A16X-01	CHCHD3	ENST00000542753.1,ENST00000448878.1,ENST00000466644.1,ENST00000481152.1,ENST00000262570.5	chr7	132659928:132660046:132709305:132709387:132754901:132754989,	132709306	132709387	132709325	132709325	Nonsense_Mutation	C	A	p.E78*
UCEC	TCGA-AP-A056-01	EXOC4	ENST00000486013.1,ENST00000462055.1,ENST00000253861.4	chr7	132937854:132937943:132959736:132959926:132973675:132973870,	132959737	132959926	132959852	132959852	Nonsense_Mutation	G	T	p.E68*
UCEC	TCGA-AX-A0J0-01	LRGUK	ENST00000285928.2	chr7	133933702:133933828:133943008:133943157:133948596:133949343,	133943009	133943157	133943070	133943070	Nonsense_Mutation	G	T	p.E754*
UCEC	TCGA-D1-A16X-01	AGBL3	ENST00000359383.3,ENST00000476700.1	chr7	134674000:134674061:134678243:134678429:134701802:134701910,134674000:134674061:134678243:134678429:134694792:134695016,	134678244	134678429	134678411	134678411	Nonsense_Mutation	G	T	p.E98*
UCEC	TCGA-BS-A0UV-01	AGBL3	ENST00000435976.2,ENST00000458078.1,ENST00000436302.2	chr7	134730224:134730325:134730549:134730662:134743919:134743986,	134730550	134730662	134730568	134730568	Nonsense_Mutation	G	T	p.E583*
UCEC	TCGA-B5-A11E-01	DGKI	ENST00000497321.1,ENST00000453654.2,ENST00000446122.1,ENST00000424189.2,ENST00000288490.5,ENST00000494390.1	chr7	137082122:137082159:137092620:137092741:137096915:137096953,	137092621	137092741	137092735	137092735	Nonsense_Mutation	C	A	p.E944*
UCEC	TCGA-AP-A056-01	AKR1D1	ENST00000468877.2,ENST00000411726.2,ENST00000242375.3	chr7	137792160:137792326:137798435:137798518:137801365:137801612,	137798436	137798518	137798460	137798460	Nonsense_Mutation	G	T	p.E294*
UCEC	TCGA-AP-A0LM-01	HIPK2	ENST00000428878.2	chr7	139316347:139316471:139415730:139416814:139477403:139477517,	139415731	139416814	139416485	139416485	Nonsense_Mutation	G	A	p.R117*
UCEC	TCGA-AX-A0J1-01	AGK	ENST00000355413.4,ENST00000473247.1	chr7	141336759:141336817:141341047:141341198:141341610:141341708,	141341048	141341198	141341096	141341096	Nonsense_Mutation	G	T	p.E259*
UCEC	TCGA-AP-A056-01	AGK	ENST00000355413.4,ENST00000473247.1	chr7	141336759:141336817:141341047:141341198:141341610:141341708,	141341048	141341198	141341162	141341162	Nonsense_Mutation	C	T	p.R281*
UCEC	TCGA-D1-A163-01	ZYX	ENST00000322764.5,ENST00000449423.2,ENST00000354434.4,ENST00000392910.2	chr7	143080092:143080415:143085311:143085432:143085581:143085593,	143085312	143085432	143085432	143085432	Nonsense_Mutation	G	T	p.E382*
UCEC	TCGA-A5-A0GQ-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000320356.2,ENST00000541220.1,ENST00000483967.1	chr7	148513775:148513870:148514313:148514483:148514968:148515209,	148514314	148514483	148514368	148514368	Nonsense_Mutation	G	C	p.Y452*
UCEC	TCGA-B5-A0JY-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000492143.1,ENST00000536783.1,ENST00000541220.1,ENST00000483012.1,ENST00000483967.1,ENST00000498186.1	chr7	148516687:148516779:148523560:148523724:148524255:148524358,	148523561	148523724	148523717	148523717	Nonsense_Mutation	C	A	p.E246*
UCEC	TCGA-B5-A0JY-01	EZH2	ENST00000320356.2	chr7	148516687:148516779:148523545:148523724:148524255:148524358,	148523546	148523724	148523717	148523717	Nonsense_Mutation	C	A	p.E246*
UCEC	TCGA-D1-A103-01	KRBA1	ENST00000485033.2,ENST00000255992.10,ENST00000479560.1,ENST00000319551.8	chr7	149417191:149417218:149417925:149418081:149418470:149418626,	149417926	149418081	149418070	149418070	Nonsense_Mutation	C	T	p.R58*
UCEC	TCGA-B5-A0JY-01	ZNF467	ENST00000484747.1,ENST00000302017.3	chr7	149466178:149466289:149467528:149467645:149468087:149468163,	149467529	149467645	149467625	149467625	Nonsense_Mutation	C	A	p.E19*
UCEC	TCGA-B5-A11E-01	AGAP3	ENST00000335367.3,ENST00000473312.1	chr7	150815591:150815719:150817073:150817232:150820880:150820937,150815591:150815719:150817073:150817232:150819811:150819880,	150817074	150817232	150817078	150817078	Nonsense_Mutation	C	T	p.R98*
UCEC	TCGA-BS-A0UV-01	CHPF2	ENST00000465601.1	chr7	150932536:150932698:150933493:150933676:150934459:150934679,150932536:150932698:150933493:150933676:150934041:150934258,	150933494	150933676	150933659	150933659	Nonsense_Mutation	G	T	p.E332*
UCEC	TCGA-B5-A11E-01	PRKAG2	ENST00000433631.2	chr7	151273456:151273538:151292430:151292537:151329154:151329224,	151292431	151292537	151292508	151292508	Nonsense_Mutation	G	A	p.R263*
UCEC	TCGA-B5-A11E-01	PRKAG2	ENST00000491938.1,ENST00000483775.1,ENST00000476632.1,ENST00000392801.2,ENST00000418337.2,ENST00000492843.1,ENST00000287878.4	chr7	151273456:151273538:151292430:151292540:151329154:151329224,	151292431	151292540	151292508	151292508	Nonsense_Mutation	G	A	p.R263*
UCEC	TCGA-AP-A056-01	GALNT11	ENST00000422997.2,ENST00000434507.1,ENST00000430044.2,ENST00000447778.1,ENST00000452146.2,ENST00000320311.2	chr7	151800196:151800363:151802329:151802455:151805122:151805372,	151802330	151802455	151802422	151802422	Nonsense_Mutation	C	T	p.R227*
UCEC	TCGA-D1-A17Q-01	GALNT11	ENST00000422997.2,ENST00000434507.1,ENST00000430044.2,ENST00000447778.1,ENST00000452146.2,ENST00000320311.2	chr7	151800196:151800363:151802329:151802455:151805122:151805372,	151802330	151802455	151802422	151802422	Nonsense_Mutation	C	T	p.R227*
UCEC	TCGA-B5-A11E-01	PAXIP1	ENST00000473219.1,ENST00000404141.1,ENST00000475066.1,ENST00000397192.1,ENST00000457196.1	chr7	154760758:154760836:154767405:154768041:154774928:154775042,	154767406	154768041	154767882	154767882	Nonsense_Mutation	C	A	p.E200*
UCEC	TCGA-AP-A059-01	UBE3C	ENST00000348165.5	chr7	157013382:157013470:157015947:157016045:157018100:157018233,	157015948	157016045	157016037	157016037	Nonsense_Mutation	C	T	p.R698*
UCEC	TCGA-AX-A0J1-01	MCPH1	ENST00000344683.5	chr8	6299587:6299677:6301913:6303068:6312663:6312773,	6301914	6303068	6302852	6302852	Nonsense_Mutation	G	T	p.G537*
UCEC	TCGA-AX-A05Z-01	DLC1	ENST00000276297.4,ENST00000511869.1,ENST00000316609.5	chr8	13251061:13251202:13258978:13259128:13356557:13357705,	13258979	13259128	13259113	13259113	Nonsense_Mutation	G	A	p.R347*
UCEC	TCGA-BS-A0UV-01	MTMR7	ENST00000521857.1,ENST00000180173.5	chr8	17206461:17206590:17218625:17218783:17228545:17228708,	17218626	17218783	17218733	17218733	Nonsense_Mutation	C	A	p.E121*
UCEC	TCGA-AX-A060-01	FGL1	ENST00000518650.1,ENST00000398056.2,ENST00000427924.1,ENST00000522444.1,ENST00000398054.1,ENST00000381841.2,ENST00000522636.1,ENST00000381840.2	chr8	17722166:17722260:17726056:17726244:17726424:17726510,	17726057	17726244	17726161	17726161	Nonsense_Mutation	C	T	p.W225*
UCEC	TCGA-AX-A0J0-01	FGL1	ENST00000518650.1,ENST00000398056.2,ENST00000427924.1,ENST00000522444.1,ENST00000398054.1,ENST00000381841.2,ENST00000523097.1,ENST00000381840.2	chr8	17731527:17731625:17731870:17732030:17739507:17739674,	17731871	17732030	17731884	17731884	Nonsense_Mutation	C	A	p.E131*
UCEC	TCGA-AX-A0J1-01	PCM1	ENST00000519253.1,ENST00000325083.8,ENST00000524226.1	chr8	17823507:17823727:17823836:17823982:17824488:17824679,	17823837	17823982	17823962	17823962	Nonsense_Mutation	G	A	p.W1067*
UCEC	TCGA-B5-A0JY-01	SH2D4A	ENST00000265807.3,ENST00000519207.1,ENST00000518040.1	chr8	19221582:19221793:19231040:19231171:19250828:19251052,	19231041	19231171	19231123	19231123	Nonsense_Mutation	C	T	p.R334*
UCEC	TCGA-BS-A0UV-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19297387:19297442:19315936:19316153:19362711:19363641,	19315937	19316153	19316061	19316061	Nonsense_Mutation	G	A	p.R243*
UCEC	TCGA-AX-A0J0-01	CSGALNACT1	ENST00000397998.3,ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000519222.1	chr8	19315936:19316153:19362711:19363641:19459281:19459376,	19362712	19363641	19363277	19363277	Nonsense_Mutation	G	T	p.C23*
UCEC	TCGA-D1-A17Q-01	INTS10	ENST00000397977.3,ENST00000523143.1,ENST00000523846.1	chr8	19682348:19682483:19683936:19684070:19687916:19688037,	19683937	19684070	19684059	19684059	Nonsense_Mutation	G	T	p.E377*
UCEC	TCGA-BS-A0UV-01	INTS10	ENST00000521008.1,ENST00000397977.3	chr8	19701638:19701749:19703214:19703308:19709159:19709185,	19703215	19703308	19703277	19703277	Nonsense_Mutation	G	T	p.E649*
UCEC	TCGA-AX-A0J0-01	GFRA2	ENST00000524240.1,ENST00000400782.4,ENST00000518077.1,ENST00000517892.1,ENST00000306793.4,ENST00000517328.1	chr8	21550792:21550912:21551975:21552029:21560316:21560489,	21551976	21552029	21551978	21551978	Nonsense_Mutation	C	A	p.E424*
UCEC	TCGA-AP-A056-01	PPP3CC	ENST00000289963.8,ENST00000240139.5,ENST00000397775.3,ENST00000521651.1,ENST00000518852.1	chr8	22333104:22333137:22368598:22368744:22370805:22370945,22355513:22355625:22368598:22368744:22370805:22370945,	22368599	22368744	22368601	22368601	Nonsense_Mutation	C	T	p.R163*
UCEC	TCGA-AP-A0LM-01	TNFRSF10B	ENST00000542226.1,ENST00000347739.3,ENST00000523504.1	chr8	22885234:22885266:22885843:22885954:22886041:22886115,	22885844	22885954	22885943	22885943	Nonsense_Mutation	C	A	p.G217*
UCEC	TCGA-AP-A051-01	ADAM28	ENST00000540823.1	chr8	24167675:24167754:24168873:24168950:24170900:24171093,24167675:24167754:24168873:24168950:24177748:24177820,	24168874	24168950	24168892	24168892	Nonsense_Mutation	G	T	p.G109*
UCEC	TCGA-AP-A0LM-01	DOCK5	ENST00000276440.7,ENST00000481100.1	chr8	25101189:25101273:25126360:25126401:25132901:25132957,	25126361	25126401	25126365	25126365	Nonsense_Mutation	G	A	p.W44*
UCEC	TCGA-BS-A0UV-01	CCDC25	ENST00000523841.1,ENST00000517979.1,ENST00000356537.4,ENST00000519509.1,ENST00000524084.1	chr8	27610028:27610104:27614235:27614287:27619935:27619975,	27614236	27614287	27614247	27614247	Nonsense_Mutation	G	A	p.R53*
UCEC	TCGA-BS-A0UF-01	ELP3	ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000542181.1,ENST00000537665.1,ENST00000523687.1,ENST00000524103.1,ENST00000519261.1,ENST00000521015.1	chr8	27967886:27967955:27970535:27970690:27987018:27987180,	27970536	27970690	27970611	27970611	Nonsense_Mutation	G	T	p.E180*
UCEC	TCGA-AP-A056-01	ELP3	ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000542181.1,ENST00000537665.1,ENST00000523687.1,ENST00000524103.1,ENST00000519261.1,ENST00000521015.1	chr8	27967886:27967955:27970535:27970690:27987018:27987180,	27970536	27970690	27970632	27970632	Nonsense_Mutation	C	T	p.R187*
UCEC	TCGA-AX-A05Z-01	ELP3	ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000542181.1,ENST00000537665.1,ENST00000523687.1,ENST00000524103.1,ENST00000519261.1,ENST00000521015.1	chr8	27967886:27967955:27970535:27970690:27987018:27987180,	27970536	27970690	27970632	27970632	Nonsense_Mutation	C	T	p.R187*
UCEC	TCGA-AX-A05Z-01	FBXO16	ENST00000380254.2,ENST00000518734.1,ENST00000346498.2,ENST00000521548.1	chr8	28309783:28309993:28314282:28314447:28321128:28321182,	28314283	28314447	28314306	28314306	Nonsense_Mutation	C	A	p.E162*
UCEC	TCGA-D1-A103-01	WRN	ENST00000298139.5	chr8	30925773:30925843:30933688:30933803:30938382:30938812,	30933689	30933803	30933694	30933694	Nonsense_Mutation	G	T	p.E244*
UCEC	TCGA-B5-A11E-01	STAR	ENST00000276449.4	chr8	38001742:38001904:38003480:38003665:38003806:38003965,38002739:38002833:38003480:38003665:38003806:38003965,	38003481	38003665	38003605	38003605	Nonsense_Mutation	C	A	p.G176*
UCEC	TCGA-AX-A05Z-01	LETM2	ENST00000297720.5,ENST00000524874.1,ENST00000530448.1,ENST00000379957.4,ENST00000518883.2,ENST00000523268.2,ENST00000523983.2,ENST00000527710.1	chr8	38261930:38262024:38264463:38264556:38264879:38264981,	38264464	38264556	38264492	38264492	Nonsense_Mutation	T	G	p.L321*
UCEC	TCGA-D1-A17Q-01	TACC1	ENST00000522904.1,ENST00000520973.1,ENST00000518415.1,ENST00000520615.1,ENST00000317827.4,ENST00000443286.2,ENST00000520340.1	chr8	38646221:38646337:38677039:38678153:38682825:38682886,	38677040	38678153	38677639	38677639	Nonsense_Mutation	G	T	p.E293*
UCEC	TCGA-BS-A0UV-01	TACC1	ENST00000522904.1,ENST00000520973.1,ENST00000518415.1,ENST00000520615.1,ENST00000317827.4,ENST00000443286.2,ENST00000520340.1	chr8	38646221:38646337:38677039:38678153:38682825:38682886,	38677040	38678153	38677639	38677639	Nonsense_Mutation	G	T	p.E293*
UCEC	TCGA-A5-A0VP-01	TM2D2	ENST00000522434.1,ENST00000412303.1,ENST00000397070.2,ENST00000522142.1,ENST00000456845.2,ENST00000521060.1,ENST00000456397.2	chr8	38849012:38849064:38851063:38851179:38852836:38852924,	38851064	38851179	38851086	38851086	Nonsense_Mutation	G	A	p.R137*
UCEC	TCGA-AP-A0LM-01	PLAT	ENST00000220809.4,ENST00000524009.1,ENST00000520523.1,ENST00000521694.1,ENST00000429089.2,ENST00000429710.2,ENST00000270189.6,ENST00000519510.1	chr8	42045423:42045534:42048889:42048932:42050631:42050729,42046451:42046589:42048889:42048932:42050631:42050729,	42048890	42048932	42048920	42048920	Nonsense_Mutation	G	A	p.R29*
UCEC	TCGA-D1-A167-01	IKBKB	ENST00000520201.1,ENST00000517917.1,ENST00000520835.1,ENST00000520655.1,ENST00000517890.1,ENST00000416505.2,ENST00000523105.1,ENST00000521661.1,ENST00000342222.2,ENST00000518647.1,ENST00000520810.1,ENST00000523517.1	chr8	42163885:42163950:42166418:42166543:42171839:42171947,	42166419	42166543	42166539	42166539	Nonsense_Mutation	C	T	p.Q230*
UCEC	TCGA-BS-A0UF-01	RNF170	ENST00000527424.1,ENST00000319104.3,ENST00000319073.4,ENST00000534961.1,ENST00000531440.1,ENST00000240159.4,ENST00000528318.1	chr8	42725146:42725255:42729073:42729149:42742991:42743014,42725146:42725255:42729073:42729149:42742870:42743014,	42729074	42729149	42729097	42729097	Nonsense_Mutation	G	A	p.R64*
UCEC	TCGA-AX-A05Z-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48701711:48701799:48706850:48707062:48710797:48710958,	48706851	48707062	48706963	48706963	Nonsense_Mutation	C	A	p.E3519*
UCEC	TCGA-AP-A059-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48809720:48809854:48811029:48811129:48812932:48813027,	48811030	48811129	48811031	48811031	Nonsense_Mutation	G	A	p.R1155*
UCEC	TCGA-D1-A103-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48843231:48843347:48845579:48845732:48846524:48846650,	48845580	48845732	48845714	48845714	Nonsense_Mutation	C	A	p.E548*
UCEC	TCGA-AP-A0LM-01	UBE2V2	ENST00000518360.1	chr8	48921001:48921030:48955592:48955741:48962412:48962538,	48955593	48955741	48955714	48955714	Nonsense_Mutation	G	A	p.W46*
UCEC	TCGA-AP-A056-01	TCEA1	ENST00000396401.3,ENST00000521604.2	chr8	54882951:54883023:54891584:54891731:54896922:54897077,	54891585	54891731	54891683	54891683	Nonsense_Mutation	C	A	p.E243*
UCEC	TCGA-AP-A059-01	TMEM68	ENST00000520414.1,ENST00000334667.2,ENST00000522090.1,ENST00000434581.2	chr8	56668916:56668970:56675193:56675587:56676494:56676539,	56675194	56675587	56675382	56675382	Nonsense_Mutation	C	T	p.W46*
UCEC	TCGA-AP-A056-01	SDR16C5	ENST00000303749.3,ENST00000522671.1	chr8	57221486:57221586:57224715:57224847:57228573:57228920,	57224716	57224847	57224747	57224747	Nonsense_Mutation	G	T	p.S145*
UCEC	TCGA-BS-A0TC-01	UBXN2B	ENST00000399598.2,ENST00000520732.1	chr8	59345718:59345802:59346953:59347063:59352191:59352329,	59346954	59347063	59347023	59347023	Nonsense_Mutation	G	T	p.E165*
UCEC	TCGA-BS-A0UF-01	NSMAF	ENST00000519858.1,ENST00000038176.3,ENST00000427130.2	chr8	59520327:59520399:59522162:59522292:59535778:59535831,	59522163	59522292	59522249	59522249	Nonsense_Mutation	C	A	p.E232*
UCEC	TCGA-BS-A0UF-01	PPP1R42	ENST00000522909.1,ENST00000324682.5	chr8	67925192:67925331:67926660:67926827:67929853:67930066,	67926661	67926827	67926703	67926703	Nonsense_Mutation	G	T	p.S85*
UCEC	TCGA-AP-A0LM-01	CSPP1	ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68102884:68102994:68105698:68105837:68107616:68107753,	68105699	68105837	68105798	68105798	Nonsense_Mutation	C	T	p.R1174*
UCEC	TCGA-AX-A05Z-01	NCOA2	ENST00000518363.2,ENST00000267974.4,ENST00000452400.2,ENST00000518287.2	chr8	71036922:71037100:71039047:71039282:71040667:71040745,	71039048	71039282	71039222	71039222	Nonsense_Mutation	G	A	p.R1248*
UCEC	TCGA-D1-A103-01	XKR9	ENST00000408926.3	chr8	71587052:71587134:71593015:71593565:71619167:71619388,	71593016	71593565	71593552	71593552	Nonsense_Mutation	G	T	p.G87*
UCEC	TCGA-BS-A0UF-01	LY96	ENST00000518893.1	chr8	74917030:74917120:74922235:74922364:74939023:74939076,74903660:74903789:74922235:74922364:74939023:74939076,	74922236	74922364	74922307	74922307	Nonsense_Mutation	G	T	p.E92*
UCEC	TCGA-D1-A103-01	GDAP1	ENST00000522568.1	chr8	75263532:75263701:75272371:75272545:75274118:75274213,75263508:75263556:75272371:75272545:75274118:75274213,	75272372	75272545	75272401	75272401	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-BS-A0UV-01	ZC2HC1A	ENST00000521176.1,ENST00000263849.4	chr8	79590797:79590914:79598701:79598843:79601456:79601608,	79598702	79598843	79598747	79598747	Nonsense_Mutation	G	T	p.E86*
UCEC	TCGA-D1-A17Q-01	TPD52	ENST00000379096.5,ENST00000518937.1,ENST00000521241.2	chr8	80965516:80965665:80976712:80976828:80992549:80992593,80965516:80965665:80976712:80976828:81032049:81032119,80965516:80965665:80976712:80976828:81083659:81083706,	80976713	80976828	80976724	80976724	Nonsense_Mutation	C	A	p.E82*
UCEC	TCGA-D1-A103-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81411758	81411758	Nonsense_Mutation	C	A	p.Y334*
UCEC	TCGA-AP-A0LM-01	FABP4	ENST00000518669.1,ENST00000256104.4,ENST00000522659.1	chr8	82390946:82391150:82391648:82391750:82392660:82392699,	82391649	82391750	82391672	82391672	Nonsense_Mutation	G	A	p.R109*
UCEC	TCGA-AP-A056-01	SNX16	ENST00000396330.2,ENST00000353788.4,ENST00000345957.4	chr8	82715350:82715463:82727559:82727629:82736026:82736085,	82727560	82727629	82727616	82727616	Nonsense_Mutation	C	A	p.E209*
UCEC	TCGA-BS-A0UV-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86042153:86042293:86043994:86044196:86047081:86047267,	86043995	86044196	86044056	86044056	Nonsense_Mutation	G	T	p.E610*
UCEC	TCGA-D1-A17Q-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86042153:86042293:86043994:86044196:86047081:86047267,	86043995	86044196	86044098	86044098	Nonsense_Mutation	G	T	p.E624*
UCEC	TCGA-B5-A0JY-01	CA13	ENST00000321764.3	chr8	86157755:86158094:86162968:86163166:86171649:86171768,	86162969	86163166	86163043	86163043	Nonsense_Mutation	G	T	p.E38*
UCEC	TCGA-B5-A11H-01	CA1	ENST00000517590.1,ENST00000517618.1,ENST00000523858.1,ENST00000521846.1,ENST00000523022.1,ENST00000523953.1,ENST00000542576.1,ENST00000522814.1,ENST00000522579.1,ENST00000256119.5,ENST00000431316.1,ENST00000432364.2,ENST00000522662.1	chr8	86249230:86249292:86250480:86250678:86253827:86253888,	86250481	86250678	86250487	86250487	Nonsense_Mutation	G	A	p.R77*
UCEC	TCGA-D1-A16X-01	CA1	ENST00000517590.1,ENST00000517618.1,ENST00000523858.1,ENST00000521846.1,ENST00000523022.1,ENST00000523953.1,ENST00000542576.1,ENST00000522814.1,ENST00000522579.1,ENST00000256119.5,ENST00000431316.1,ENST00000432364.2,ENST00000522662.1	chr8	86249230:86249292:86250480:86250678:86253827:86253888,	86250481	86250678	86250541	86250541	Nonsense_Mutation	C	A	p.E59*
UCEC	TCGA-AP-A056-01	WWP1	ENST00000518683.1,ENST00000265428.4,ENST00000517970.1	chr8	87393733:87393858:87410570:87410708:87410800:87410867,	87410571	87410708	87410585	87410585	Nonsense_Mutation	G	T	p.E117*
UCEC	TCGA-AX-A0J0-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90958367:90958523:90960051:90960120:90965471:90965919,	90960052	90960120	90960060	90960060	Nonsense_Mutation	C	A	p.E636*
UCEC	TCGA-AP-A0LM-01	SLC26A7	ENST00000522181.1	chr8	92330443:92330608:92346522:92346675:92352631:92352779,	92346523	92346675	92346559	92346559	Nonsense_Mutation	C	T	p.R227*
UCEC	TCGA-B5-A0JY-01	RAD54B	ENST00000523839.1,ENST00000336148.5	chr8	95423348:95423543:95470495:95470664:95479632:95479783,	95470496	95470664	95470577	95470577	Nonsense_Mutation	C	A	p.E75*
UCEC	TCGA-D1-A17Q-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000423620.2	chr8	95680176:95680478:95683680:95683899:95686535:95686722,	95683681	95683899	95683795	95683795	Nonsense_Mutation	C	T	p.R450*
UCEC	TCGA-D1-A17Q-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686698	95686698	Nonsense_Mutation	C	T	p.R539*
UCEC	TCGA-D1-A17Q-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686698	95686698	Nonsense_Mutation	C	T	p.R539*
UCEC	TCGA-AP-A059-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686698	95686698	Nonsense_Mutation	C	T	p.R539*
UCEC	TCGA-AP-A059-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686698	95686698	Nonsense_Mutation	C	T	p.R539*
UCEC	TCGA-AX-A05Z-01	ESRP1	ENST00000433389.2,ENST00000358397.5	chr8	95690460:95690599:95709079:95709189:95718152:95718743,95704974:95705055:95709079:95709189:95718152:95718743,	95709080	95709189	95709137	95709137	Nonsense_Mutation	G	T	p.E677*
UCEC	TCGA-AX-A05Z-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95850721:95850846:95853718:95853819:95854574:95854716,	95853719	95853819	95853794	95853794	Nonsense_Mutation	G	T	p.E365*
UCEC	TCGA-D1-A17Q-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100403784:100403932:100443764:100443892:100454628:100454639,	100443765	100443892	100443865	100443865	Nonsense_Mutation	G	A	p.W1061*
UCEC	TCGA-AP-A056-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100589717:100589861:100654038:100654726:100673581:100673719,	100654039	100654726	100654663	100654663	Nonsense_Mutation	C	T	p.R1974*
UCEC	TCGA-B5-A0JY-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101052189:101052315:101054029:101054144:101059690:101059824,	101054030	101054144	101054038	101054038	Nonsense_Mutation	C	A	p.E644*
UCEC	TCGA-BS-A0UV-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000518719.1	chr8	101105674:101105737:101117601:101117630:101118124:101118190,	101117602	101117630	101117607	101117607	Nonsense_Mutation	C	A	p.E17*
UCEC	TCGA-B5-A11N-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000518719.1	chr8	101105674:101105737:101117601:101117630:101118124:101118190,	101117602	101117630	101117607	101117607	Nonsense_Mutation	C	A	p.E17*
UCEC	TCGA-AP-A059-01	GRHL2	ENST00000395927.1,ENST00000251808.3	chr8	102564942:102565010:102570646:102571040:102582566:102582622,	102570647	102571040	102570909	102570909	Nonsense_Mutation	C	T	p.R183*
UCEC	TCGA-D1-A16Y-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103317312:103317523:103323526:103323724:103323962:103324117,	103323527	103323724	103323706	103323706	Nonsense_Mutation	G	A	p.R813*
UCEC	TCGA-BS-A0UF-01	DPYS	ENST00000351513.2	chr8	105393411:105393542:105405011:105405219:105430943:105431082,105393411:105393542:105405011:105405219:105423976:105424043,105393411:105393542:105405011:105405219:105436474:105436617,	105405012	105405219	105405062	105405062	Nonsense_Mutation	G	A	p.R465*
UCEC	TCGA-BS-A0UV-01	PKHD1L1	ENST00000378402.5,ENST00000526472.1	chr8	110535461:110535615:110539012:110539249:110542308:110542489,	110539013	110539249	110539060	110539060	Nonsense_Mutation	G	T	p.E4178*
UCEC	TCGA-AX-A0J1-01	EBAG9	ENST00000531677.1,ENST00000337573.5,ENST00000395785.2,ENST00000530629.1	chr8	110566957:110567116:110569163:110569271:110573066:110573095,	110569164	110569271	110569182	110569182	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-AP-A0LM-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616218	116616218	Nonsense_Mutation	C	A	p.E660*
UCEC	TCGA-B5-A0JY-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616419	116616419	Nonsense_Mutation	C	A	p.E593*
UCEC	TCGA-BS-A0UV-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116632180	116632180	Nonsense_Mutation	C	A	p.E49*
UCEC	TCGA-BS-A0UV-01	ENPP2	ENST00000427067.2,ENST00000259486.6,ENST00000518958.1,ENST00000522826.1,ENST00000075322.6	chr8	120631483:120631544:120633633:120633759:120638804:120638960,	120633634	120633759	120633709	120633709	Nonsense_Mutation	C	A	p.E115*
UCEC	TCGA-AX-A05Z-01	ENPP2	ENST00000427067.2,ENST00000259486.6,ENST00000518958.1,ENST00000522826.1,ENST00000075322.6	chr8	120631483:120631544:120633633:120633759:120638804:120638960,	120633634	120633759	120633724	120633724	Nonsense_Mutation	C	A	p.E110*
UCEC	TCGA-BS-A0UV-01	ATAD2	ENST00000521903.1	chr8	124359331:124359646:124360426:124360513:124361524:124361661,	124360427	124360513	124360510	124360510	Nonsense_Mutation	G	A	p.R604*
UCEC	TCGA-BS-A0UV-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000517666.1,ENST00000521496.1	chr8	124359331:124359646:124360422:124360513:124361524:124361661,	124360423	124360513	124360510	124360510	Nonsense_Mutation	G	A	p.R604*
UCEC	TCGA-AX-A0J0-01	FBXO32	ENST00000443022.2,ENST00000521719.1,ENST00000520511.1	chr8	124545430:124545480:124546941:124547054:124553138:124553429,	124546942	124547054	124547051	124547051	Nonsense_Mutation	G	T	p.Y40*
UCEC	TCGA-BS-A0UV-01	FAM91A1	ENST00000519721.1,ENST00000334705.7,ENST00000521166.1	chr8	124798243:124798391:124798734:124798850:124799500:124799595,124797868:124797981:124798734:124798850:124799500:124799595,	124798735	124798850	124798809	124798809	Nonsense_Mutation	C	A	p.S346*
UCEC	TCGA-BS-A0UV-01	TATDN1	ENST00000523214.1,ENST00000519776.1,ENST00000523888.1,ENST00000519232.1,ENST00000521546.1,ENST00000522810.1,ENST00000605953.1,ENST00000519548.1,ENST00000276692.6	chr8	125527986:125528029:125528127:125528271:125531058:125531122,	125528128	125528271	125528140	125528140	Nonsense_Mutation	C	A	p.E112*
UCEC	TCGA-BS-A0UV-01	FAM49B	ENST00000518879.1	chr8	130867943:130867993:130874474:130874580:130883620:130883742,130867943:130867993:130874474:130874580:130915557:130915596,	130874475	130874580	130874503	130874503	Nonsense_Mutation	C	A	p.E47*
UCEC	TCGA-A5-A0GP-01	LRRC6	ENST00000518642.1,ENST00000250173.1,ENST00000519595.1	chr8	133637557:133637700:133644985:133645209:133650180:133650353,	133644986	133645209	133645194	133645194	Nonsense_Mutation	C	A	p.E149*
UCEC	TCGA-B5-A11N-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133975238:133975319:133978804:133978942:133980038:133980142,	133978805	133978942	133978816	133978816	Nonsense_Mutation	G	T	p.E1854*
UCEC	TCGA-AP-A056-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042143	134042143	Nonsense_Mutation	G	T	p.G2372*
UCEC	TCGA-BS-A0UV-01	SLA	ENST00000519747.1,ENST00000523610.1,ENST00000518594.1,ENST00000520106.1,ENST00000338087.5,ENST00000519341.1,ENST00000522002.1	chr8	134063136:134063160:134072344:134072445:134087097:134087198,	134072345	134072445	134072408	134072408	Nonsense_Mutation	C	A	p.E40*
UCEC	TCGA-B5-A11E-01	NDRG1	ENST00000518480.1	chr8	134276789:134276895:134292474:134292510:134296491:134296568,134276789:134276895:134292474:134292510:134309376:134309480,	134292475	134292510	134292492	134292492	Nonsense_Mutation	G	A	p.Q28*
UCEC	TCGA-AP-A0LM-01	COL22A1	ENST00000341807.4,ENST00000435777.1	chr8	139675947:139675983:139688800:139688878:139696667:139696712,	139688801	139688878	139688872	139688872	Nonsense_Mutation	G	A	p.R1027*
UCEC	TCGA-BS-A0UV-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139727924:139727978:139728469:139728532:139729067:139729112,	139728470	139728532	139728482	139728482	Nonsense_Mutation	C	A	p.E66*
UCEC	TCGA-D1-A17Q-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000518509.1,ENST00000340930.3,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141727787:141727808:141745349:141745554:141749116:141749206,	141745350	141745554	141745480	141745480	Nonsense_Mutation	G	A	p.R656*
UCEC	TCGA-AX-A05Z-01	PTK2	ENST00000521395.1,ENST00000523803.1,ENST00000340930.3,ENST00000520892.1,ENST00000395218.2,ENST00000517453.1,ENST00000522684.1	chr8	141856757:141856777:141900641:141900868:142011223:142011257,141874410:141874498:141900641:141900868:142011223:142011257,141874410:141874498:141900641:141900868:141958764:141958822,141889610:141889736:141900641:141900868:141958764:141958822,141889610:141889736:141900641:141900868:142011223:142011257,141889610:141889736:141900641:141900868:141935759:141935848,	141900642	141900868	141900822	141900822	Nonsense_Mutation	G	T	p.Y27*
UCEC	TCGA-AP-A059-01	TOP1MT	ENST00000519977.1	chr8	144386553:144387085:144391584:144391713:144392237:144392387,	144391585	144391713	144391631	144391631	Nonsense_Mutation	C	A	p.G596*
UCEC	TCGA-BS-A0UV-01	JAK2	ENST00000539801.1,ENST00000381652.3,ENST00000544510.1	chr9	5090445:5090570:5090738:5090911:5123003:5123121,	5090739	5090911	5090886	5090886	Nonsense_Mutation	G	T	p.E1012*
UCEC	TCGA-D1-A17Q-01	JAK2	ENST00000539801.1,ENST00000381652.3,ENST00000544510.1	chr9	5123003:5123121:5126332:5126446:5126683:5126814,	5126333	5126446	5126393	5126393	Nonsense_Mutation	G	T	p.E1080*
UCEC	TCGA-AX-A0J1-01	MLANA	ENST00000381477.3,ENST00000482341.1,ENST00000381471.1,ENST00000381476.1	chr9	5892510:5892551:5897556:5897653:5906884:5906995,	5897557	5897653	5897630	5897630	Nonsense_Mutation	C	T	p.R51*
UCEC	TCGA-B5-A0JY-01	KIAA2026	ENST00000540714.1,ENST00000399933.3	chr9	5929043:5929159:5954015:5954095:5968018:5968081,5944870:5944960:5954015:5954095:5968018:5968081,	5954016	5954095	5954090	5954090	Nonsense_Mutation	T	A	p.K740*
UCEC	TCGA-AP-A0LM-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968331	5968331	Nonsense_Mutation	C	A	p.E634*
UCEC	TCGA-AX-A05Z-01	IL33	ENST00000381434.3	chr9	6250473:6250599:6251139:6251265:6253551:6253602,6250473:6250599:6251139:6251265:6252865:6252991,	6251140	6251265	6251254	6251254	Nonsense_Mutation	C	A	p.S111*
UCEC	TCGA-AX-A05Z-01	KDM4C	ENST00000428870.2,ENST00000442236.2,ENST00000420847.1,ENST00000381309.3,ENST00000381306.3	chr9	7046861:7046917:7049091:7049200:7076433:7077262,7046861:7046917:7049091:7049200:7103684:7103870,	7049092	7049200	7049132	7049132	Nonsense_Mutation	C	T	p.R786*
UCEC	TCGA-B5-A0JY-01	MPDZ	ENST00000447879.1,ENST00000541718.1,ENST00000536827.1,ENST00000381015.4,ENST00000546205.1,ENST00000319217.7,ENST00000381022.2	chr9	13193165:13193312:13196119:13196229:13205034:13205106,	13196120	13196229	13196200	13196200	Nonsense_Mutation	C	A	p.E526*
UCEC	TCGA-D1-A103-01	NFIB	ENST00000380934.4,ENST00000380959.3,ENST00000380924.1	chr9	14088302:14088325:14120438:14120623:14125630:14125765,	14120439	14120623	14120612	14120612	Nonsense_Mutation	G	A	p.R358*
UCEC	TCGA-A5-A0GP-01	SNAPC3	ENST00000490969.1,ENST00000467062.1,ENST00000380821.3	chr9	15444599:15444704:15447092:15447242:15451317:15451400,	15447093	15447242	15447168	15447168	Nonsense_Mutation	C	T	p.R220*
UCEC	TCGA-AP-A056-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436043	16436043	Nonsense_Mutation	C	A	p.E717*
UCEC	TCGA-BS-A0UV-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436742	16436742	Nonsense_Mutation	G	A	p.R484*
UCEC	TCGA-BS-A0UF-01	CNTLN	ENST00000262360.5,ENST00000425824.1,ENST00000380647.3	chr9	17342322:17342442:17366614:17366715:17388159:17388251,	17366615	17366715	17366631	17366631	Nonsense_Mutation	G	T	p.E635*
UCEC	TCGA-B5-A11E-01	HAUS6	ENST00000380502.3	chr9	19053140:19056402:19057958:19058999:19060085:19060221,	19057959	19058999	19058868	19058868	Nonsense_Mutation	C	A	p.E633*
UCEC	TCGA-BS-A0UV-01	HAUS6	ENST00000380502.3	chr9	19053140:19056402:19057958:19058999:19060085:19060221,	19057959	19058999	19058868	19058868	Nonsense_Mutation	C	A	p.E633*
UCEC	TCGA-D1-A17Q-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19076599:19076702:19078173:19078300:19080476:19080670,	19078174	19078300	19078225	19078225	Nonsense_Mutation	C	T	p.W380*
UCEC	TCGA-BS-A0UF-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380427.1	chr9	19356969:19357152:19357962:19358158:19360241:19360487,	19357963	19358158	19358036	19358036	Nonsense_Mutation	C	T	p.R1395*
UCEC	TCGA-AP-A056-01	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20414132	20414132	Nonsense_Mutation	C	A	p.E238*
UCEC	TCGA-AX-A05Z-01	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20414132	20414132	Nonsense_Mutation	C	A	p.E238*
UCEC	TCGA-BK-A0CB-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
UCEC	TCGA-BK-A0CB-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971028	21971028	Nonsense_Mutation	C	T	p.W110*
UCEC	TCGA-AX-A0J0-01	IFT74	ENST00000443698.1,ENST00000429045.2,ENST00000517444.1,ENST00000519968.1,ENST00000517866.1,ENST00000433700.1,ENST00000380062.5	chr9	26978125:26978261:26980568:26980617:26984254:26984274,	26980569	26980617	26980603	26980603	Nonsense_Mutation	T	G	p.Y97*
UCEC	TCGA-B5-A0JY-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158095	27158095	Nonsense_Mutation	C	T	p.R107*
UCEC	TCGA-D1-A16X-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158095	27158095	Nonsense_Mutation	C	T	p.R107*
UCEC	TCGA-AP-A0LM-01	DNAJA1	ENST00000544625.1,ENST00000330899.4	chr9	33029882:33029987:33030437:33030665:33034213:33034328,	33030438	33030665	33030482	33030482	Nonsense_Mutation	C	T	p.R154*
UCEC	TCGA-AP-A0LM-01	ANKRD18B	ENST00000474881.2,ENST00000484634.1	chr9	33534367:33534505:33536875:33536943:33539446:33539500,	33536876	33536943	33536943	33536943	Nonsense_Mutation	G	T	p.E398*
UCEC	TCGA-BS-A0UF-01	UBAP2	ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33943417:33943587:33944362:33944637:33948371:33948585,	33944363	33944637	33944512	33944512	Nonsense_Mutation	G	A	p.R466*
UCEC	TCGA-AP-A051-01	DCAF12	ENST00000361264.4	chr9	34089409:34089588:34093283:34093446:34096713:34096779,	34093284	34093446	34093293	34093293	Nonsense_Mutation	G	A	p.R339*
UCEC	TCGA-AP-A059-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091480	35091480	Nonsense_Mutation	G	A	p.R802*
UCEC	TCGA-AX-A0J0-01	NPR2	ENST00000342694.2,ENST00000464810.1	chr9	35799614:35799728:35800018:35800154:35800385:35800480,	35800019	35800154	35800118	35800118	Nonsense_Mutation	C	T	p.R363*
UCEC	TCGA-B5-A0JY-01	RNF38	ENST00000484621.1	chr9	36369719:36369929:36375930:36376124:36390463:36390613,36369719:36369929:36375930:36376124:36400550:36400869,36369719:36369929:36375930:36376124:36400932:36401195,	36375931	36376124	36375992	36375992	Nonsense_Mutation	G	A	p.R99*
UCEC	TCGA-AX-A05Z-01	PAX5	ENST00000523241.1,ENST00000414447.1,ENST00000377853.2,ENST00000523493.1,ENST00000377852.2,ENST00000520281.1,ENST00000520154.1,ENST00000377840.2,ENST00000377847.2	chr9	37014993:37015191:37020632:37020798:37033982:37034028,	37020633	37020798	37020790	37020790	Nonsense_Mutation	C	A	p.G19*
UCEC	TCGA-BS-A0UF-01	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39165929:39166073:39171365:39171627:39175945:39176084,	39171366	39171627	39171462	39171462	Nonsense_Mutation	G	A	p.R413*
UCEC	TCGA-A5-A0GP-01	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39165929:39166073:39171365:39171627:39175945:39176084,	39171366	39171627	39171504	39171504	Nonsense_Mutation	G	A	p.R399*
UCEC	TCGA-AX-A0J0-01	PIP5K1B	ENST00000478500.1,ENST00000541509.1,ENST00000437200.1,ENST00000265382.3	chr9	71491592:71491710:71503896:71504049:71509254:71509270,	71503897	71504049	71504008	71504008	Nonsense_Mutation	G	T	p.E144*
UCEC	TCGA-B5-A0JY-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962834:72962954:72965029:72965209:72965291:72965387,	72965030	72965209	72965054	72965054	Nonsense_Mutation	C	T	p.R972*
UCEC	TCGA-BS-A0UF-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000376871.3,ENST00000449912.2,ENST00000451710.3,ENST00000376872.3	chr9	77347600:77347652:77353322:77353528:77354282:77354365,	77353323	77353528	77353422	77353422	Nonsense_Mutation	C	A	p.E1893*
UCEC	TCGA-B5-A11E-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000360280.3,ENST00000357409.5	chr9	79816280:79816323:79820228:79820324:79820893:79820995,	79820229	79820324	79820294	79820294	Nonsense_Mutation	G	T	p.E85*
UCEC	TCGA-AP-A056-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000360280.3,ENST00000357409.5	chr9	79946925:79947029:79952170:79952453:79954431:79954827,	79952171	79952453	79952302	79952302	Nonsense_Mutation	C	A	p.S2076*
UCEC	TCGA-D1-A17Q-01	TLE4	ENST00000376537.4,ENST00000376520.4	chr9	82320803:82320857:82321661:82321814:82323032:82323077,82320803:82320857:82321661:82321814:82322037:82322133,	82321662	82321814	82321747	82321747	Nonsense_Mutation	C	T	p.R23*
UCEC	TCGA-AX-A0J0-01	TLE4	ENST00000376537.4,ENST00000376520.4	chr9	82320803:82320857:82321661:82321814:82323032:82323077,82320803:82320857:82321661:82321814:82322037:82322133,	82321662	82321814	82321803	82321803	Nonsense_Mutation	G	T	p.E309*
UCEC	TCGA-AP-A056-01	TLE4	ENST00000376537.4,ENST00000376520.4,ENST00000417836.1	chr9	82320803:82320857:82322037:82322133:82323032:82323077,82321680:82321814:82322037:82322133:82323032:82323077,	82322038	82322133	82322053	82322053	Nonsense_Mutation	A	T	p.K318*
UCEC	TCGA-AP-A056-01	RASEF	ENST00000376447.3	chr9	85615083:85615231:85615347:85615485:85615810:85616045,	85615348	85615485	85615382	85615382	Nonsense_Mutation	G	T	p.S514*
UCEC	TCGA-AP-A051-01	RASEF	ENST00000376447.3	chr9	85620330:85620415:85622351:85622420:85624555:85624671,	85622352	85622420	85622386	85622386	Nonsense_Mutation	G	A	p.R332*
UCEC	TCGA-AX-A05Z-01	FRMD3	ENST00000376438.1,ENST00000376434.1	chr9	85857904:85858130:85862969:85863431:85905517:85905642,	85862970	85863431	85863195	85863195	Nonsense_Mutation	C	A	p.E478*
UCEC	TCGA-AP-A059-01	UBQLN1	ENST00000376395.4,ENST00000533705.1,ENST00000257468.7	chr9	86293355:86293514:86294689:86294952:86297865:86297981,	86294690	86294952	86294875	86294875	Nonsense_Mutation	G	A	p.Q176*
UCEC	TCGA-AP-A056-01	KIF27	ENST00000297814.2,ENST00000413982.1,ENST00000334204.2	chr9	86514575:86514719:86517974:86518933:86523366:86523567,	86517975	86518933	86518061	86518061	Nonsense_Mutation	G	A	p.R458*
UCEC	TCGA-D1-A16X-01	KIF27	ENST00000297814.2,ENST00000413982.1,ENST00000334204.2	chr9	86514575:86514719:86517974:86518933:86523366:86523567,	86517975	86518933	86518646	86518646	Nonsense_Mutation	C	A	p.E263*
UCEC	TCGA-D1-A16X-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000432218.1,ENST00000337006.4,ENST00000376083.3	chr9	88236116:88236200:88247576:88248289:88257741:88257858,	88247577	88248289	88247611	88247611	Nonsense_Mutation	C	A	p.E621*
UCEC	TCGA-D1-A17Q-01	SHC3	ENST00000375830.1,ENST00000375835.4	chr9	91656940:91657099:91660660:91660748:91661758:91661909,	91660661	91660748	91660706	91660706	Nonsense_Mutation	C	A	p.G386*
UCEC	TCGA-BS-A0UV-01	SHC3	ENST00000375830.1	chr9	91692754:91692818:91727470:91727541:91792901:91793682,	91727471	91727541	91727526	91727526	Nonsense_Mutation	C	A	p.E164*
UCEC	TCGA-BS-A0UV-01	SECISBP2	ENST00000534113.2,ENST00000375807.3	chr9	91934566:91934712:91940341:91940591:91940811:91940953,	91940342	91940591	91940541	91940541	Nonsense_Mutation	C	T	p.R128*
UCEC	TCGA-BS-A0UV-01	SECISBP2	ENST00000339901.4	chr9	91934566:91934712:91940462:91940591:91940811:91940953,	91940463	91940591	91940541	91940541	Nonsense_Mutation	C	T	p.R128*
UCEC	TCGA-AX-A0J0-01	ASPN	ENST00000375544.3,ENST00000375543.1,ENST00000395538.3	chr9	95228639:95228853:95232950:95233063:95236905:95237209,	95232951	95233063	95232983	95232983	Nonsense_Mutation	C	A	p.E119*
UCEC	TCGA-AP-A0LM-01	ECM2	ENST00000444490.2	chr9	95274292:95274408:95276912:95277419:95279968:95280157,	95276913	95277419	95277084	95277084	Nonsense_Mutation	C	A	p.G295*
UCEC	TCGA-AP-A0LM-01	ECM2	ENST00000344604.5	chr9	95274292:95274408:95276912:95277485:95279968:95280157,	95276913	95277485	95277084	95277084	Nonsense_Mutation	C	A	p.G295*
UCEC	TCGA-AP-A059-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000277165.6	chr9	96291751:96291862:96294436:96294611:96305503:96305753,	96294437	96294611	96294606	96294606	Nonsense_Mutation	C	T	p.Q478*
UCEC	TCGA-B5-A11E-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98231219:98231435:98232094:98232213:98238315:98238441,	98232095	98232213	98232138	98232138	Nonsense_Mutation	G	A	p.R602*
UCEC	TCGA-AX-A05Z-01	HSD17B3	ENST00000375263.3,ENST00000464104.1	chr9	99003039:99003189:99006610:99006676:99007626:99007708,	99006611	99006676	99006625	99006625	Nonsense_Mutation	C	A	p.E220*
UCEC	TCGA-AX-A05Z-01	HSD17B3	ENST00000494814.1	chr9	99003039:99003189:99006572:99006676:99007626:99007708,	99006573	99006676	99006625	99006625	Nonsense_Mutation	C	A	p.E220*
UCEC	TCGA-BS-A0TC-01	NCBP1	ENST00000375147.3	chr9	100403843:100403944:100405485:100405642:100407398:100407506,	100405486	100405642	100405601	100405601	Nonsense_Mutation	G	T	p.E114*
UCEC	TCGA-D1-A17Q-01	XPA	ENST00000375128.4,ENST00000462523.1	chr9	100449377:100449543:100451815:100451921:100455930:100456041,	100451816	100451921	100451874	100451874	Nonsense_Mutation	C	A	p.E111*
UCEC	TCGA-AP-A056-01	COL15A1	ENST00000375001.3	chr9	101778257:101778401:101782670:101782724:101784372:101784432,	101782671	101782724	101782716	101782716	Nonsense_Mutation	G	T	p.G565*
UCEC	TCGA-D1-A103-01	INVS	ENST00000541287.1,ENST00000262456.2,ENST00000262457.2	chr9	102991941:102992109:103002341:103002522:103004851:103004961,	103002342	103002522	103002390	103002390	Nonsense_Mutation	C	T	p.R222*
UCEC	TCGA-BS-A0UF-01	INVS	ENST00000541287.1,ENST00000262456.2,ENST00000262457.2	chr9	102991941:102992109:103002341:103002522:103004851:103004961,	103002342	103002522	103002492	103002492	Nonsense_Mutation	C	T	p.R256*
UCEC	TCGA-B5-A0JY-01	TEX10	ENST00000429235.1,ENST00000535814.1,ENST00000374902.4	chr9	103091467:103091557:103092212:103092451:103102538:103102651,	103092213	103092451	103092330	103092330	Nonsense_Mutation	C	A	p.E458*
UCEC	TCGA-AX-A0J0-01	ALDOB	ENST00000374855.4	chr9	104182859:104184186:104187124:104187324:104187734:104187909,	104187125	104187324	104187236	104187236	Nonsense_Mutation	C	T	p.W296*
UCEC	TCGA-B5-A0JY-01	SMC2	ENST00000374793.3,ENST00000303219.8,ENST00000374787.3,ENST00000286398.7	chr9	106876971:106877110:106878480:106878600:106880451:106880656,	106878481	106878600	106878523	106878523	Nonsense_Mutation	C	T	p.R572*
UCEC	TCGA-D1-A16X-01	SLC44A1	ENST00000374723.1,ENST00000470972.1,ENST00000374724.1,ENST00000374720.3	chr9	108110638:108110732:108118492:108118662:108120624:108120714,	108118493	108118662	108118629	108118629	Nonsense_Mutation	G	T	p.E213*
UCEC	TCGA-AP-A056-01	SLC44A1	ENST00000374723.1,ENST00000470972.1,ENST00000374724.1,ENST00000374720.3	chr9	108110638:108110732:108118492:108118662:108120624:108120714,	108118493	108118662	108118629	108118629	Nonsense_Mutation	G	T	p.E213*
UCEC	TCGA-BS-A0UF-01	CTNNAL1	ENST00000374595.4,ENST00000325551.4	chr9	111727657:111727808:111739241:111739328:111741560:111741761,111734954:111735113:111739241:111739328:111741560:111741761,	111739242	111739328	111739244	111739244	Nonsense_Mutation	C	A	p.E396*
UCEC	TCGA-AP-A056-01	EPB41L4B	ENST00000374557.4,ENST00000374566.3	chr9	112027259:112027304:112029752:112029831:112030670:112030713,	112029753	112029831	112029805	112029805	Nonsense_Mutation	G	A	p.R161*
UCEC	TCGA-D1-A17Q-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114905750:114905903:114911523:114911679:114919779:114919893,	114911524	114911679	114911578	114911578	Nonsense_Mutation	G	A	p.R107*
UCEC	TCGA-D1-A17Q-01	PTBP3	ENST00000343327.2	chr9	115024784:115024879:115030328:115030475:115038123:115038293,115024784:115024879:115030328:115030475:115060111:115060196,	115030329	115030475	115030400	115030400	Nonsense_Mutation	G	A	p.R122*
UCEC	TCGA-AP-A0LM-01	HSDL2	ENST00000467434.1	chr9	115167912:115168002:115181139:115181238:115200710:115200905,115179120:115179224:115181139:115181238:115200710:115200905,115171186:115171301:115181139:115181238:115200710:115200905,	115181140	115181238	115181193	115181193	Nonsense_Mutation	G	T	p.E185*
UCEC	TCGA-AP-A0LM-01	WDR31	ENST00000465205.1,ENST00000374195.3	chr9	116085290:116085435:116091160:116091235:116093263:116093393,116085290:116085435:116091160:116091235:116094186:116094330,	116091161	116091235	116091184	116091184	Nonsense_Mutation	C	A	p.G101*
UCEC	TCGA-AP-A059-01	CDK5RAP2	ENST00000359309.3	chr9	123202067:123202250:123210172:123210404:123215733:123216151,	123210173	123210404	123210353	123210353	Nonsense_Mutation	C	A	p.G949*
UCEC	TCGA-AX-A0J0-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123230137:123230275:123232388:123232498:123234025:123234140,	123232389	123232498	123232496	123232496	Nonsense_Mutation	C	A	p.E621*
UCEC	TCGA-D1-A174-01	FBXW2	ENST00000474117.1,ENST00000453291.1,ENST00000608872.1	chr9	123538370:123538504:123540628:123540823:123550046:123550464,	123540629	123540823	123540779	123540779	Nonsense_Mutation	G	A	p.Q179*
UCEC	TCGA-BS-A0UV-01	PSMD5	ENST00000471789.1,ENST00000373904.5,ENST00000210313.3	chr9	123594109:123594223:123595589:123595734:123605014:123605160,	123595590	123595734	123595733	123595733	Nonsense_Mutation	C	A	p.E59*
UCEC	TCGA-AP-A056-01	CNTRL	ENST00000431571.1,ENST00000373855.1,ENST00000373851.2,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123907120:123907237:123907521:123907663:123908385:123908534,	123907522	123907663	123907525	123907525	Nonsense_Mutation	C	T	p.R1058*
UCEC	TCGA-AP-A0LM-01	RBM18	ENST00000417201.3	chr9	125009796:125009883:125014125:125014252:125023658:125023787,	125014126	125014252	125014161	125014161	Nonsense_Mutation	G	A	p.R69*
UCEC	TCGA-AP-A051-01	PDCL	ENST00000259467.4	chr9	125585294:125585476:125588894:125589071:125590749:125590910,	125588895	125589071	125588973	125588973	Nonsense_Mutation	G	A	p.R32*
UCEC	TCGA-BS-A0UV-01	RABGAP1	ENST00000373647.4,ENST00000456584.1	chr9	125760875:125761045:125772632:125772807:125777821:125777915,	125772633	125772807	125772639	125772639	Nonsense_Mutation	C	T	p.Q461*
UCEC	TCGA-D1-A17Q-01	STRBP	ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2	chr9	125910056:125910149:125920290:125920402:125920610:125920708,	125920291	125920402	125920294	125920294	Nonsense_Mutation	C	A	p.E348*
UCEC	TCGA-BS-A0UF-01	DENND1A	ENST00000473039.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000373618.1,ENST00000394215.2,ENST00000474676.1	chr9	126414291:126414402:126429304:126429358:126433569:126433650,	126429305	126429358	126429350	126429350	Nonsense_Mutation	A	C	p.Y154*
UCEC	TCGA-AX-A05Z-01	GOLGA1	ENST00000485337.1,ENST00000373555.4,ENST00000475407.1	chr9	127651712:127651815:127652667:127652757:127660827:127660923,	127652668	127652757	127652754	127652754	Nonsense_Mutation	C	A	p.E471*
UCEC	TCGA-AP-A0LM-01	RABEPK	ENST00000394125.4,ENST00000416065.1,ENST00000373538.3	chr9	127969842:127970000:127975648:127975801:127982605:127982676,127969842:127970000:127975648:127975801:127982817:127982937,	127975649	127975801	127975774	127975774	Nonsense_Mutation	C	T	p.R113*
UCEC	TCGA-BS-A0UF-01	GAPVD1	ENST00000467750.1,ENST00000497580.1,ENST00000265956.4,ENST00000495955.1,ENST00000394084.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128061200:128061385:128064261:128065105:128067341:128067428,	128064262	128065105	128064548	128064548	Nonsense_Mutation	G	T	p.E158*
UCEC	TCGA-AX-A05Z-01	GAPVD1	ENST00000467750.1,ENST00000497580.1,ENST00000265956.4,ENST00000495955.1,ENST00000394084.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128061200:128061385:128064261:128065105:128067341:128067428,	128064262	128065105	128064821	128064821	Nonsense_Mutation	G	T	p.E249*
UCEC	TCGA-BS-A0UJ-01	GAPVD1	ENST00000265956.4,ENST00000495955.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000394105.2	chr9	128103513:128103543:128104497:128104578:128109097:128109220,	128104498	128104578	128104530	128104530	Nonsense_Mutation	G	T	p.E1027*
UCEC	TCGA-B5-A11H-01	ST6GALNAC6	ENST00000485320.1	chr9	130649813:130649870:130652934:130653322:130656790:130656908,	130652935	130653322	130653016	130653016	Nonsense_Mutation	G	A	p.R202*
UCEC	TCGA-B5-A11H-01	ST6GALNAC6	ENST00000373142.1,ENST00000373141.1,ENST00000373144.3,ENST00000480417.1,ENST00000291839.5,ENST00000373146.1	chr9	130649813:130649870:130652915:130653322:130656790:130656908,	130652916	130653322	130653016	130653016	Nonsense_Mutation	G	A	p.R202*
UCEC	TCGA-AP-A0LM-01	URM1	ENST00000452446.1,ENST00000372850.1	chr9	131133649:131133694:131140314:131140385:131150094:131150174,	131140315	131140385	131140355	131140355	Nonsense_Mutation	C	T	p.R26*
UCEC	TCGA-AP-A0LM-01	URM1	ENST00000470840.1,ENST00000372847.1	chr9	131133649:131133694:131140273:131140385:131150094:131150174,	131140274	131140385	131140355	131140355	Nonsense_Mutation	C	T	p.R26*
UCEC	TCGA-B5-A0JY-01	GLE1	ENST00000309971.4,ENST00000372770.4	chr9	131277807:131277918:131284946:131285095:131285558:131285619,	131284947	131285095	131285061	131285061	Nonsense_Mutation	G	T	p.E183*
UCEC	TCGA-BS-A0UV-01	NUP188	ENST00000372577.2	chr9	131721293:131721413:131730784:131730996:131731678:131731793,	131730785	131730996	131730845	131730845	Nonsense_Mutation	G	T	p.E216*
UCEC	TCGA-BS-A0UF-01	NUP188	ENST00000372577.2	chr9	131721293:131721413:131730784:131730996:131731678:131731793,	131730785	131730996	131730845	131730845	Nonsense_Mutation	G	T	p.E216*
UCEC	TCGA-B5-A11E-01	EXOSC2	ENST00000372352.3,ENST00000495699.2,ENST00000372350.3,ENST00000463488.1,ENST00000546165.1,ENST00000372358.5	chr9	133572968:133573014:133573548:133573638:133574715:133574781,	133573549	133573638	133573555	133573555	Nonsense_Mutation	C	T	p.Q93*
UCEC	TCGA-B5-A11E-01	EXOSC2	ENST00000430138.2	chr9	133570878:133570993:133572968:133573638:133574715:133574781,	133572969	133573638	133573555	133573555	Nonsense_Mutation	C	T	p.Q93*
UCEC	TCGA-B5-A0JY-01	LAMC3	ENST00000361069.4	chr9	133948631:133948708:133951217:133951352:133952573:133952721,	133951218	133951352	133951327	133951327	Nonsense_Mutation	G	T	p.E1202*
UCEC	TCGA-AX-A0J0-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134350019	134350019	Nonsense_Mutation	G	T	p.E835*
UCEC	TCGA-AP-A0LM-01	MED27	ENST00000357028.2,ENST00000292035.5	chr9	134735493:134736059:134738449:134738527:134759444:134759486,	134738450	134738527	134738461	134738461	Nonsense_Mutation	G	A	p.R264*
UCEC	TCGA-AP-A056-01	SETX	ENST00000224140.5,ENST00000372169.2,ENST00000436441.1	chr9	135147096:135147195:135150642:135150807:135152446:135152539,	135150643	135150807	135150788	135150788	Nonsense_Mutation	C	A	p.E2319*
UCEC	TCGA-BS-A0TC-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2,ENST00000436441.1	chr9	135163936:135164038:135171258:135171415:135172273:135172441,	135171259	135171415	135171322	135171322	Nonsense_Mutation	C	A	p.E2015*
UCEC	TCGA-BS-A0UV-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203741	135203741	Nonsense_Mutation	C	A	p.E1082*
UCEC	TCGA-BS-A0UV-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135209994:135210114:135211682:135211902:135218076:135218186,	135211683	135211902	135211830	135211830	Nonsense_Mutation	C	A	p.E191*
UCEC	TCGA-AX-A0J1-01	SURF6	ENST00000372022.4	chr9	136199383:136199596:136200553:136200642:136201227:136201437,	136200554	136200642	136200595	136200595	Nonsense_Mutation	G	A	p.R118*
UCEC	TCGA-AX-A0J0-01	BRD3	ENST00000473349.1	chr9	136899822:136899951:136901153:136901446:136906881:136906916,	136901154	136901446	136901247	136901247	Nonsense_Mutation	C	A	p.E615*
UCEC	TCGA-BS-A0UF-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1,ENST00000277537.6	chr9	139345707:139345860:139347879:139347962:139348560:139348779,	139347880	139347962	139347909	139347909	Nonsense_Mutation	C	A	p.E2044*
UCEC	TCGA-AP-A0LM-01	EHMT1	ENST00000371394.2,ENST00000462484.1,ENST00000334856.6,ENST00000465566.1,ENST00000462942.1,ENST00000460843.1	chr9	140648682:140648743:140652331:140652463:140657126:140657272,	140652332	140652463	140652403	140652403	Nonsense_Mutation	G	A	p.W474*
UCEC	TCGA-BS-A0UA-01	ZMYND11	ENST00000381607.4,ENST00000381602.4,ENST00000473115.1,ENST00000381591.1,ENST00000402736.1,ENST00000309776.4,ENST00000535374.1,ENST00000509513.2,ENST00000403354.1,ENST00000558098.2,ENST00000381584.1,ENST00000397959.3,ENST00000397962.3,ENST00000545619.1,ENST00000602682.1,ENST00000381604.4	chr10	292705:292913:293337:293406:294275:294471,	293338	293406	293392	293392	Nonsense_Mutation	G	T	p.E365*
UCEC	TCGA-BS-A0UF-01	WDR37	ENST00000381329.1,ENST00000263150.4,ENST00000358220.1	chr10	1118055:1118233:1123846:1123943:1125950:1126046,	1123847	1123943	1123904	1123904	Nonsense_Mutation	G	T	p.E66*
UCEC	TCGA-A5-A0GP-01	WDR37	ENST00000381329.1,ENST00000263150.4,ENST00000358220.1	chr10	1118055:1118233:1123846:1123943:1125950:1126046,	1123847	1123943	1123910	1123910	Nonsense_Mutation	G	T	p.E68*
UCEC	TCGA-B5-A0JY-01	PITRM1	ENST00000380994.1,ENST00000224949.4	chr10	3189763:3189929:3190178:3190255:3190362:3190483,	3190179	3190255	3190225	3190225	Nonsense_Mutation	G	A	p.R675*
UCEC	TCGA-AX-A0J0-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5791181	5791181	Nonsense_Mutation	G	T	p.E1933*
UCEC	TCGA-AX-A0J0-01	ANKRD16	ENST00000380094.5,ENST00000380092.4	chr10	5920084:5920250:5922260:5922339:5924968:5925130,	5922261	5922339	5922267	5922267	Nonsense_Mutation	G	A	p.R308*
UCEC	TCGA-B5-A0JY-01	ITIH2	ENST00000379587.4	chr10	7745362:7745481:7747070:7747145:7749163:7749196,7745362:7745481:7747070:7747145:7750984:7751154,	7747071	7747145	7747143	7747143	Nonsense_Mutation	C	T	p.Q53*
UCEC	TCGA-AX-A0J1-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11994064:11994248:11997230:11997506:11998318:11998522,	11997231	11997506	11997263	11997263	Nonsense_Mutation	G	A	p.R940*
UCEC	TCGA-AX-A0J0-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12041904:12042008:12043674:12043824:12046528:12046726,	12043675	12043824	12043816	12043816	Nonsense_Mutation	C	A	p.E505*
UCEC	TCGA-AP-A056-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12070817	12070817	Nonsense_Mutation	C	A	p.E358*
UCEC	TCGA-AP-A056-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13164384:13164487:13165994:13166110:13167417:13167567,	13165995	13166110	13166106	13166106	Nonsense_Mutation	G	T	p.E332*
UCEC	TCGA-AP-A0LM-01	FRMD4A	ENST00000358621.4,ENST00000357447.2	chr10	13688333:13689035:13693902:13693974:13696415:13696512,	13693903	13693974	13693964	13693964	Nonsense_Mutation	C	A	p.E1021*
UCEC	TCGA-B5-A0JY-01	CDNF	ENST00000466269.1	chr10	14867492:14867619:14870143:14870271:14876215:14876332,14867492:14867619:14870143:14870271:14878249:14878289,	14870144	14870271	14870191	14870191	Nonsense_Mutation	C	A	p.E66*
UCEC	TCGA-D1-A103-01	MEIG1	ENST00000407572.1	chr10	15001508:15001556:15008438:15008605:15014511:15014680,	15008439	15008605	15008518	15008518	Nonsense_Mutation	G	A	p.W17*
UCEC	TCGA-B5-A0JY-01	NMT2	ENST00000540259.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15154794:15154962:15161341:15161512:15170348:15170457,	15161342	15161512	15161458	15161458	Nonsense_Mutation	G	A	p.R352*
UCEC	TCGA-EY-A1GS-01	VIM	ENST00000544301.1,ENST00000224237.5	chr10	17277844:17277888:17278292:17278378:17279228:17279285,	17278293	17278378	17278332	17278332	Nonsense_Mutation	C	G	p.S438*
UCEC	TCGA-EY-A1GS-01	VIM	ENST00000487938.1	chr10	17277167:17277388:17277844:17278378:17279228:17279584,	17277845	17278378	17278332	17278332	Nonsense_Mutation	C	G	p.S438*
UCEC	TCGA-AP-A0LM-01	NSUN6	ENST00000377304.4	chr10	18837040:18837166:18840751:18840900:18874877:18875022,	18840752	18840900	18840769	18840769	Nonsense_Mutation	G	A	p.R352*
UCEC	TCGA-AP-A051-01	PLXDC2	ENST00000377238.2,ENST00000377242.3,ENST00000377252.4	chr10	20466256:20466338:20500597:20500658:20506354:20506505,	20500598	20500658	20500656	20500656	Nonsense_Mutation	G	T	p.E374*
UCEC	TCGA-AP-A0LM-01	NEBL	ENST00000377122.4	chr10	21120401:21120512:21124441:21124552:21129667:21129778,	21124442	21124552	21124549	21124549	Nonsense_Mutation	C	A	p.E448*
UCEC	TCGA-B5-A11E-01	DNAJC1	ENST00000476103.1	chr10	22208831:22208858:22209726:22209892:22217434:22217481,22208831:22208858:22209726:22209892:22217968:22218070,	22209727	22209892	22209855	22209855	Nonsense_Mutation	G	A	p.R137*
UCEC	TCGA-BS-A0UV-01	SPAG6	ENST00000376601.1,ENST00000376603.2,ENST00000376624.3,ENST00000538630.1	chr10	22690089:22690206:22699959:22700105:22705547:22705702,	22699960	22700105	22699984	22699984	Nonsense_Mutation	C	T	p.R447*
UCEC	TCGA-B5-A11E-01	ARMC3	ENST00000484642.1,ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23250867:23251007:23257234:23257418:23270268:23270382,	23257235	23257418	23257235	23257235	Nonsense_Mutation	G	T	p.E245*
UCEC	TCGA-AX-A0J0-01	ARMC3	ENST00000376528.4,ENST00000298032.5,ENST00000409983.3	chr10	23319559:23319725:23321789:23321952:23326198:23326495,	23321790	23321952	23321905	23321905	Nonsense_Mutation	G	T	p.G788*
UCEC	TCGA-AX-A1C7-01	KIAA1217	ENST00000376451.2,ENST00000438429.1,ENST00000396446.1,ENST00000307544.6,ENST00000376452.3,ENST00000376456.4,ENST00000376462.1,ENST00000376454.3,ENST00000458595.1,ENST00000396445.1	chr10	24790307:24790474:24802187:24802363:24809051:24809182,	24802188	24802363	24802317	24802317	Nonsense_Mutation	A	T	p.R711*
UCEC	TCGA-D1-A16X-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909164	24909164	Nonsense_Mutation	G	A	p.R554*
UCEC	TCGA-AX-A0J1-01	GPR158	ENST00000376351.3	chr10	25684839:25684942:25701178:25701402:25755579:25755648,	25701179	25701402	25701316	25701316	Nonsense_Mutation	C	T	p.R417*
UCEC	TCGA-AP-A0LM-01	GPR158	ENST00000376351.3	chr10	25861577:25861816:25877935:25878074:25883220:25883326,	25877936	25878074	25877973	25877973	Nonsense_Mutation	C	A	p.C597*
UCEC	TCGA-BS-A0TC-01	MYO3A	ENST00000265944.5,ENST00000543632.1	chr10	26312950:26313016:26315305:26315461:26355903:26356003,	26315306	26315461	26315346	26315346	Nonsense_Mutation	G	T	p.E280*
UCEC	TCGA-D1-A103-01	MYO3A	ENST00000265944.5	chr10	26462591:26463486:26465629:26465774:26482133:26482240,	26465630	26465774	26465648	26465648	Nonsense_Mutation	G	T	p.E1438*
UCEC	TCGA-BS-A0UV-01	MYO3A	ENST00000265944.5	chr10	26462591:26463486:26465629:26465774:26482133:26482240,	26465630	26465774	26465648	26465648	Nonsense_Mutation	G	T	p.E1438*
UCEC	TCGA-D1-A17Q-01	MYO3A	ENST00000265944.5	chr10	26490193:26490234:26491892:26492036:26500771:26501138,	26491893	26492036	26492002	26492002	Nonsense_Mutation	G	T	p.E1566*
UCEC	TCGA-AX-A05Z-01	ANKRD26	ENST00000445828.1	chr10	27283969:27284076:27294551:27294652:27295845:27295891,	27294552	27294652	27294557	27294557	Nonsense_Mutation	C	A	p.E1699*
UCEC	TCGA-BS-A0UV-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27323940	27323940	Nonsense_Mutation	G	A	p.R1147*
UCEC	TCGA-AX-A0J0-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324294	27324294	Nonsense_Mutation	C	A	p.E1029*
UCEC	TCGA-AP-A056-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324528	27324528	Nonsense_Mutation	C	A	p.E951*
UCEC	TCGA-BS-A0UF-01	MASTL	ENST00000342386.6	chr10	27469881:27469995:27470408:27470510:27475307:27475647,27462049:27462188:27470408:27470510:27475307:27475647,	27470409	27470510	27470465	27470465	Nonsense_Mutation	G	T	p.E812*
UCEC	TCGA-AP-A056-01	RAB18	ENST00000423465.1,ENST00000375802.3,ENST00000356940.6	chr10	27822664:27822782:27822856:27822923:27826804:27826895,	27822857	27822923	27822881	27822881	Nonsense_Mutation	G	T	p.E135*
UCEC	TCGA-BS-A0UF-01	WAC	ENST00000345541.6	chr10	28900702:28900851:28903495:28905291:28906585:28906713,	28903496	28905291	28903595	28903595	Nonsense_Mutation	C	T	p.R513*
UCEC	TCGA-BS-A0UV-01	ARHGAP12	ENST00000396144.4,ENST00000497103.1,ENST00000375245.4,ENST00000344936.2,ENST00000492028.1,ENST00000375250.5,ENST00000311380.4	chr10	32101634:32101751:32103186:32103289:32106715:32106814,	32103187	32103289	32103220	32103220	Nonsense_Mutation	C	A	p.E601*
UCEC	TCGA-D1-A103-01	ARHGAP12	ENST00000396144.4,ENST00000344936.2,ENST00000375250.5	chr10	32141444:32141525:32142993:32143134:32150322:32150586,	32142994	32143134	32143119	32143119	Nonsense_Mutation	C	A	p.E322*
UCEC	TCGA-BS-A0UV-01	PARD3	ENST00000374789.3,ENST00000466092.1,ENST00000545693.1,ENST00000545260.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34558714:34558827:34573062:34573173:34606034:34606260,	34573063	34573173	34573160	34573160	Nonsense_Mutation	G	A	p.R1030*
UCEC	TCGA-AX-A0J0-01	CUL2	ENST00000374742.1,ENST00000374746.1,ENST00000374754.4,ENST00000374748.1,ENST00000374749.3,ENST00000602371.1,ENST00000374751.3,ENST00000537177.1	chr10	35324099:35324224:35327847:35328010:35333493:35333604,	35327848	35328010	35327866	35327866	Nonsense_Mutation	G	A	p.R287*
UCEC	TCGA-D1-A103-01	CUL2	ENST00000374742.1,ENST00000374746.1,ENST00000374754.4,ENST00000374748.1,ENST00000374749.3,ENST00000602371.1,ENST00000374751.3,ENST00000537177.1	chr10	35324099:35324224:35327847:35328010:35333493:35333604,	35327848	35328010	35327920	35327920	Nonsense_Mutation	G	A	p.R269*
UCEC	TCGA-A5-A0GP-01	CREM	ENST00000495960.1	chr10	35437328:35437419:35467799:35467914:35468061:35468204,	35467800	35467914	35467886	35467886	Nonsense_Mutation	G	T	p.E80*
UCEC	TCGA-A5-A0GP-01	CREM	ENST00000482633.1,ENST00000489388.1,ENST00000461968.1	chr10	35437328:35437419:35467816:35467914:35468061:35468204,35416089:35416121:35467816:35467914:35468061:35468204,	35467817	35467914	35467886	35467886	Nonsense_Mutation	G	T	p.E80*
UCEC	TCGA-BS-A0TC-01	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000475522.1	chr10	37476885:37476947:37478394:37478485:37481991:37482020,	37478395	37478485	37478455	37478455	Nonsense_Mutation	G	T	p.E772*
UCEC	TCGA-AX-A05Z-01	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000475522.1	chr10	37476885:37476947:37478394:37478485:37481991:37482020,	37478395	37478485	37478455	37478455	Nonsense_Mutation	G	T	p.E772*
UCEC	TCGA-AX-A0J0-01	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000361713.1	chr10	37505108:37505322:37506622:37506806:37507907:37508825,	37506623	37506806	37506774	37506774	Nonsense_Mutation	G	T	p.E1023*
UCEC	TCGA-BS-A0UF-01	BMS1	ENST00000374518.5	chr10	43312765:43312942:43315683:43315872:43315955:43316136,	43315684	43315872	43315744	43315744	Nonsense_Mutation	C	T	p.R881*
UCEC	TCGA-BS-A0UF-01	RASSF4	ENST00000340258.5,ENST00000374417.2,ENST00000334940.6,ENST00000489171.1,ENST00000472561.1	chr10	45486395:45486517:45487352:45487450:45488716:45488878,	45487353	45487450	45487428	45487428	Nonsense_Mutation	G	T	p.E295*
UCEC	TCGA-AX-A0J0-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46120030:46120085:46121398:46122553:46135263:46135411,	46121399	46122553	46121779	46121779	Nonsense_Mutation	C	A	p.E498*
UCEC	TCGA-D1-A17Q-01	MAPK8	ENST00000432379.1,ENST00000374176.4,ENST00000374174.1,ENST00000395611.3,ENST00000374182.3,ENST00000476134.1,ENST00000360332.3,ENST00000374179.3,ENST00000374189.1,ENST00000426557.1	chr10	49609654:49609825:49612894:49613024:49617921:49617980,	49612895	49613024	49612989	49612989	Nonsense_Mutation	G	T	p.E73*
UCEC	TCGA-BS-A0UV-01	WDFY4	ENST00000325239.5,ENST00000413659.2	chr10	49982502:49982717:49983756:49983851:49984794:49984956,	49983757	49983851	49983783	49983783	Nonsense_Mutation	C	A	p.S932*
UCEC	TCGA-D1-A17Q-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61413680	61413680	Nonsense_Mutation	C	T	p.W368*
UCEC	TCGA-B5-A0JY-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61414117	61414117	Nonsense_Mutation	C	A	p.E223*
UCEC	TCGA-AX-A060-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828830	61828830	Nonsense_Mutation	G	A	p.Q3937*
UCEC	TCGA-A5-A0GP-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61835108	61835108	Nonsense_Mutation	G	T	p.S1844*
UCEC	TCGA-A5-A0GP-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845621	63845621	Nonsense_Mutation	G	T	p.E454*
UCEC	TCGA-BS-A0UV-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845621	63845621	Nonsense_Mutation	G	T	p.E454*
UCEC	TCGA-D1-A103-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022544	64022544	Nonsense_Mutation	G	A	p.R33*
UCEC	TCGA-BS-A0UF-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022544	64022544	Nonsense_Mutation	G	A	p.R33*
UCEC	TCGA-A5-A0GP-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022544	64022544	Nonsense_Mutation	G	A	p.R33*
UCEC	TCGA-AP-A0LM-01	ZNF365	ENST00000395255.3,ENST00000410046.3	chr10	64134111:64134217:64135939:64136695:64148154:64148335,	64135940	64136695	64136664	64136664	Nonsense_Mutation	G	T	p.E238*
UCEC	TCGA-BS-A0UV-01	REEP3	ENST00000373758.4	chr10	65281122:65281337:65326097:65326170:65354537:65354614,	65326098	65326170	65326133	65326133	Nonsense_Mutation	C	A	p.S23*
UCEC	TCGA-B5-A0JY-01	SIRT1	ENST00000432464.1,ENST00000212015.6,ENST00000406900.1,ENST00000403579.1	chr10	69669012:69669199:69672230:69672788:69676021:69678143,	69672231	69672788	69672272	69672272	Nonsense_Mutation	G	T	p.E172*
UCEC	TCGA-AX-A05Z-01	SIRT1	ENST00000432464.1,ENST00000212015.6,ENST00000406900.1,ENST00000403579.1	chr10	69669012:69669199:69672230:69672788:69676021:69678143,	69672231	69672788	69672431	69672431	Nonsense_Mutation	G	T	p.E225*
UCEC	TCGA-AP-A0LM-01	DNA2	ENST00000358410.3	chr10	70182453:70182647:70190192:70190412:70191613:70191728,	70190193	70190412	70190255	70190255	Nonsense_Mutation	C	A	p.E802*
UCEC	TCGA-B5-A11N-01	DNA2	ENST00000399179.2,ENST00000399180.2,ENST00000551118.2,ENST00000358410.3	chr10	70218860:70218992:70225423:70225569:70227879:70228063,	70225424	70225569	70225446	70225446	Nonsense_Mutation	C	A	p.E275*
UCEC	TCGA-B5-A0JY-01	CCAR1	ENST00000536012.1,ENST00000479143.2,ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543706.1,ENST00000543225.1	chr10	70517106:70517134:70520763:70520949:70525644:70525684,	70520764	70520949	70520794	70520794	Nonsense_Mutation	C	T	p.R651*
UCEC	TCGA-AP-A051-01	DDX50	ENST00000373585.3,ENST00000466265.1	chr10	70695761:70695835:70696691:70696851:70700815:70700950,	70696692	70696851	70696828	70696828	Nonsense_Mutation	C	T	p.R578*
UCEC	TCGA-BS-A0UV-01	VPS26A	ENST00000395098.1,ENST00000373382.1,ENST00000263559.6	chr10	70884002:70884036:70892653:70892803:70916762:70916919,70884002:70884036:70892653:70892803:70915567:70915643,	70892654	70892803	70892786	70892786	Nonsense_Mutation	G	T	p.E46*
UCEC	TCGA-AX-A05Z-01	SUPV3L1	ENST00000359655.4,ENST00000471069.1,ENST00000478227.1,ENST00000486661.1,ENST00000483572.1	chr10	70947468:70947512:70949022:70949191:70951410:70951522,	70949023	70949191	70949113	70949113	Nonsense_Mutation	C	A	p.Y221*
UCEC	TCGA-AP-A0LM-01	HKDC1	ENST00000395086.2,ENST00000354624.5	chr10	71017082:71017182:71018531:71018715:71020894:71021050,	71018532	71018715	71018551	71018551	Nonsense_Mutation	C	A	p.C684*
UCEC	TCGA-AP-A0LT-01	HK1	ENST00000494253.1,ENST00000360289.2,ENST00000404387.2,ENST00000448642.2,ENST00000298649.3,ENST00000359426.6	chr10	71129196:71129380:71136689:71136845:71139617:71139851,	71136690	71136845	71136805	71136805	Nonsense_Mutation	C	T	p.R335*
UCEC	TCGA-AP-A0LM-01	COL13A1	ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000520133.1	chr10	71684718:71684763:71685559:71685628:71686842:71686866,	71685560	71685628	71685584	71685584	Nonsense_Mutation	G	T	p.G441*
UCEC	TCGA-B5-A11E-01	ADAMTS14	ENST00000373207.1,ENST00000373208.1	chr10	72513555:72513763:72517717:72517847:72517930:72518041,	72517718	72517847	72517720	72517720	Nonsense_Mutation	C	A	p.C983*
UCEC	TCGA-AX-A05Z-01	MICU1	ENST00000361114.5,ENST00000604025.1,ENST00000604238.1,ENST00000401998.3,ENST00000398761.4	chr10	74322652:74322821:74326390:74326552:74385767:74385832,	74326391	74326552	74326518	74326518	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-D1-A17Q-01	P4HA1	ENST00000394890.2,ENST00000307116.2,ENST00000412021.2	chr10	74790028:74790128:74804738:74804809:74806682:74806859,	74804739	74804809	74804803	74804803	Nonsense_Mutation	G	A	p.R362*
UCEC	TCGA-BS-A0UF-01	FAM149B1	ENST00000372955.3	chr10	74987864:74987942:74990179:74990283:74992696:74992921,74987817:74987918:74990179:74990283:74992696:74992921,	74990180	74990283	74990256	74990256	Nonsense_Mutation	G	T	p.E300*
UCEC	TCGA-B5-A11H-01	CAMK2G	ENST00000305762.7,ENST00000351293.3,ENST00000472912.1,ENST00000492020.1,ENST00000423381.1,ENST00000441192.1,ENST00000322680.3,ENST00000372765.1,ENST00000433289.1,ENST00000394762.2,ENST00000322635.3	chr10	75602215:75602299:75606982:75607105:75607745:75607770,	75606983	75607105	75606989	75606989	Nonsense_Mutation	C	T	p.W271*
UCEC	TCGA-AP-A056-01	CAMK2G	ENST00000305762.7,ENST00000351293.3,ENST00000472912.1,ENST00000492020.1,ENST00000423381.1,ENST00000441192.1,ENST00000322680.3,ENST00000372765.1,ENST00000433289.1,ENST00000394762.2,ENST00000322635.3	chr10	75602215:75602299:75606982:75607105:75607745:75607770,	75606983	75607105	75607064	75607064	Nonsense_Mutation	C	A	p.E25*
UCEC	TCGA-BS-A0TC-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673383	75673383	Nonsense_Mutation	G	T	p.E183*
UCEC	TCGA-B5-A0JY-01	VDAC2	ENST00000332211.6,ENST00000313132.4,ENST00000298468.5,ENST00000543351.1,ENST00000535553.1	chr10	76980500:76980728:76982009:76982160:76989401:76989459,	76982010	76982160	76982023	76982023	Nonsense_Mutation	G	T	p.E200*
UCEC	TCGA-AX-A0J1-01	KCNMA1	ENST00000406533.3,ENST00000372408.2,ENST00000372421.5,ENST00000354353.5,ENST00000372443.1,ENST00000286627.5,ENST00000286628.8,ENST00000372440.1,ENST00000457953.1,ENST00000372437.1,ENST00000372403.4,ENST00000434208.1,ENST00000404771.3,ENST00000604624.1,ENST00000404857.1	chr10	78649208:78649327:78651282:78651477:78669723:78669854,	78651283	78651477	78651324	78651324	Nonsense_Mutation	C	T	p.W993*
UCEC	TCGA-B5-A11E-01	ZCCHC24	ENST00000372336.3,ENST00000372333.3	chr10	81145792:81146214:81154031:81154196:81192313:81192514,	81154032	81154196	81154182	81154182	Nonsense_Mutation	G	A	p.R95*
UCEC	TCGA-AP-A0LP-01	ZCCHC24	ENST00000372336.3,ENST00000372333.3	chr10	81145792:81146214:81154031:81154196:81192313:81192514,	81154032	81154196	81154182	81154182	Nonsense_Mutation	G	A	p.R95*
UCEC	TCGA-BS-A0UV-01	DYDC1	ENST00000454362.1,ENST00000372204.3,ENST00000372202.1,ENST00000421924.2	chr10	82098852:82098909:82102024:82102117:82111656:82111758,	82102025	82102117	82102039	82102039	Nonsense_Mutation	C	A	p.E110*
UCEC	TCGA-AX-A0J1-01	GHITM	ENST00000372134.3	chr10	85903750:85903862:85904630:85904772:85908485:85908594,	85904631	85904772	85904637	85904637	Nonsense_Mutation	G	A	p.W116*
UCEC	TCGA-A5-A0GB-01	GRID1	ENST00000327946.7,ENST00000536331.1	chr10	87373163:87373404:87379623:87379790:87406958:87407154,	87379624	87379790	87379738	87379738	Nonsense_Mutation	G	A	p.Q532*
UCEC	TCGA-B5-A11E-01	ATAD1	ENST00000328142.3,ENST00000400215.3,ENST00000541004.1,ENST00000308448.7	chr10	89536077:89536184:89544226:89544427:89550066:89550187,	89544227	89544427	89544353	89544353	Nonsense_Mutation	G	A	p.R153*
UCEC	TCGA-B5-A11J-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685300	89685300	Nonsense_Mutation	C	G	p.Y65*
UCEC	TCGA-D1-A16X-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711983	89711983	Nonsense_Mutation	G	T	p.E201*
UCEC	TCGA-AX-A05Z-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711983	89711983	Nonsense_Mutation	G	T	p.E201*
UCEC	TCGA-A5-A0VP-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-A5-A0GP-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-AP-A054-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-BS-A0UJ-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCEC	TCGA-BS-A0UV-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717695	89717695	Nonsense_Mutation	C	A	p.Y240*
UCEC	TCGA-D1-A0ZN-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717753	89717753	Nonsense_Mutation	A	T	p.K260*
UCEC	TCGA-B5-A11E-01	RNLS	ENST00000331772.4	chr10	90034717:90034789:90074222:90074398:90122308:90122482,90044715:90045263:90074222:90074398:90122308:90122482,	90074223	90074398	90074235	90074235	Nonsense_Mutation	C	T	p.W288*
UCEC	TCGA-AP-A051-01	RNLS	ENST00000371947.3,ENST00000331772.4	chr10	90122308:90122482:90332659:90332818:90341323:90341466,	90332660	90332818	90332760	90332760	Nonsense_Mutation	C	T	p.W142*
UCEC	TCGA-BS-A0UF-01	BTAF1	ENST00000265990.6	chr10	93711159:93711323:93713493:93713630:93716284:93716414,	93713494	93713630	93713614	93713614	Nonsense_Mutation	G	T	p.E229*
UCEC	TCGA-D1-A15X-01	BTAF1	ENST00000265990.6,ENST00000544642.1	chr10	93757359:93757508:93767879:93768032:93768585:93768707,	93767880	93768032	93767940	93767940	Nonsense_Mutation	C	T	p.R1241*
UCEC	TCGA-AP-A059-01	IDE	ENST00000265986.6,ENST00000496903.1,ENST00000371581.5	chr10	94220947:94221009:94223487:94223760:94225432:94225600,	94223488	94223760	94223528	94223528	Nonsense_Mutation	G	T	p.Y907*
UCEC	TCGA-D1-A17Q-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96028685:96028793:96030242:96030359:96033318:96033477,	96030243	96030359	96030348	96030348	Nonsense_Mutation	G	T	p.E1499*
UCEC	TCGA-D1-A160-01	TBC1D12	ENST00000225235.4	chr10	96201652:96201776:96234424:96234540:96253121:96253204,	96234425	96234540	96234437	96234437	Nonsense_Mutation	C	T	p.R370*
UCEC	TCGA-AX-A0J1-01	SORBS1	ENST00000361941.3,ENST00000371247.2	chr10	97082502:97082562:97096277:97097051:97098889:97099084,97081719:97081778:97096277:97097051:97098889:97099084,	97096278	97097051	97096778	97096778	Nonsense_Mutation	G	A	p.R1047*
UCEC	TCGA-BS-A0UV-01	SORBS1	ENST00000371239.1,ENST00000353505.5,ENST00000371245.3,ENST00000474353.2,ENST00000607232.1,ENST00000465489.1,ENST00000371249.2,ENST00000371227.4,ENST00000306402.6,ENST00000371241.1	chr10	97143807:97143871:97143994:97144042:97156976:97157040,	97143995	97144042	97144009	97144009	Nonsense_Mutation	G	T	p.S465*
UCEC	TCGA-BS-A0UV-01	ENTPD1	ENST00000371207.3,ENST00000543964.1,ENST00000453258.2,ENST00000371205.4,ENST00000539125.1,ENST00000371203.5,ENST00000483213.1	chr10	97604331:97604392:97605113:97605353:97607202:97607256,	97605114	97605353	97605310	97605310	Nonsense_Mutation	G	A	p.W252*
UCEC	TCGA-D1-A103-01	HPS1	ENST00000361490.4,ENST00000497527.1,ENST00000325103.6,ENST00000467246.1,ENST00000478087.1,ENST00000359632.3,ENST00000470095.1	chr10	100183636:100183644:100184069:100184131:100185297:100185477,	100184070	100184131	100184123	100184123	Nonsense_Mutation	C	T	p.W448*
UCEC	TCGA-AX-A05Z-01	HPSE2	ENST00000370549.1,ENST00000404542.1,ENST00000370552.3	chr10	100219330:100219496:100242392:100242539:100249807:100249953,	100242393	100242539	100242490	100242490	Nonsense_Mutation	G	A	p.R506*
UCEC	TCGA-B5-A11E-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103907016	103907016	Nonsense_Mutation	C	T	p.R1423*
UCEC	TCGA-BS-A0UF-01	TAF5	ENST00000369839.3	chr10	105141477:105141598:105142994:105143124:105145082:105145247,	105142995	105143124	105143015	105143015	Nonsense_Mutation	G	T	p.E519*
UCEC	TCGA-BS-A0UF-01	PDCD11	ENST00000369797.3	chr10	105184740:105185282:105187085:105187148:105191885:105191991,	105187086	105187148	105187117	105187117	Nonsense_Mutation	C	T	p.R1113*
UCEC	TCGA-AP-A0LM-01	PDCD11	ENST00000369797.3	chr10	105201969:105202217:105202921:105203090:105203671:105203825,	105202922	105203090	105203013	105203013	Nonsense_Mutation	C	T	p.R1683*
UCEC	TCGA-D1-A103-01	SLK	ENST00000369755.3,ENST00000335753.4	chr10	105759624:105759706:105761201:105761330:105761929:105763285,	105761202	105761330	105761241	105761241	Nonsense_Mutation	G	T	p.E302*
UCEC	TCGA-D1-A16X-01	SLK	ENST00000369755.3,ENST00000335753.4	chr10	105761201:105761330:105761929:105763285:105765318:105765449,	105761930	105763285	105762314	105762314	Nonsense_Mutation	G	T	p.E460*
UCEC	TCGA-AX-A05Z-01	SLK	ENST00000369755.3,ENST00000335753.4	chr10	105761201:105761330:105761929:105763285:105765318:105765449,	105761930	105763285	105763002	105763002	Nonsense_Mutation	C	A	p.S689*
UCEC	TCGA-D1-A167-01	COL17A1	ENST00000369733.3,ENST00000353479.5	chr10	105811912:105811975:105812788:105812893:105813677:105813740,	105812789	105812893	105812855	105812855	Nonsense_Mutation	G	A	p.R625*
UCEC	TCGA-AP-A051-01	SFR1	ENST00000369727.3,ENST00000369729.3,ENST00000336358.5	chr10	105882722:105882844:105883471:105883882:105885270:105885602,	105883472	105883882	105883493	105883493	Nonsense_Mutation	G	T	p.E53*
UCEC	TCGA-AP-A0LM-01	XPNPEP1	ENST00000430337.1,ENST00000508059.1,ENST00000488118.2,ENST00000502935.1,ENST00000369680.4,ENST00000443078.1,ENST00000322238.8,ENST00000369683.1,ENST00000403138.2,ENST00000460523.1	chr10	111642358:111642400:111643824:111643906:111646003:111646099,	111643825	111643906	111643889	111643889	Nonsense_Mutation	C	A	p.G213*
UCEC	TCGA-D1-A17D-01	XPNPEP1	ENST00000508275.1,ENST00000490740.2,ENST00000423625.1,ENST00000451592.1,ENST00000502935.1,ENST00000369680.4,ENST00000506777.1,ENST00000443078.1,ENST00000322238.8,ENST00000403138.2,ENST00000502595.1	chr10	111648260:111648353:111651479:111651584:111667448:111667573,111648260:111648353:111651479:111651584:111652769:111652833,	111651480	111651584	111651532	111651532	Nonsense_Mutation	G	T	p.Y78*
UCEC	TCGA-D1-A16X-01	SMC3	ENST00000361804.4	chr10	112359411:112359570:112360196:112360304:112360779:112360888,	112360197	112360304	112360248	112360248	Nonsense_Mutation	C	T	p.R827*
UCEC	TCGA-AP-A059-01	PDCD4	ENST00000280154.7,ENST00000462577.1,ENST00000393104.2	chr10	112650395:112650428:112653848:112653956:112654169:112654280,	112653849	112653956	112653867	112653867	Nonsense_Mutation	G	T	p.E337*
UCEC	TCGA-AX-A0J0-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724138	112724138	Nonsense_Mutation	G	T	p.E8*
UCEC	TCGA-B5-A0JY-01	SHOC2	ENST00000451838.1,ENST00000369452.4,ENST00000265277.5,ENST00000489390.1	chr10	112769005:112769143:112769470:112769588:112771367:112771428,	112769471	112769588	112769582	112769582	Nonsense_Mutation	G	T	p.E512*
UCEC	TCGA-AP-A056-01	ABLIM1	ENST00000369256.2,ENST00000369266.3,ENST00000392952.3	chr10	116233637:116233715:116245055:116245139:116247716:116247752,	116245056	116245139	116245085	116245085	Nonsense_Mutation	G	A	p.R306*
UCEC	TCGA-BS-A0UF-01	FAM204A	ENST00000369170.4,ENST00000470476.1,ENST00000369172.4,ENST00000369183.4	chr10	120094625:120094725:120094907:120094938:120095065:120095153,	120094908	120094938	120094924	120094924	Nonsense_Mutation	C	A	p.E113*
UCEC	TCGA-AP-A056-01	SFXN4	ENST00000330036.6,ENST00000461438.1,ENST00000355697.2,ENST00000466218.1	chr10	120921851:120921926:120923642:120923708:120924713:120925054,120921851:120921926:120923642:120923708:120925048:120925135,	120923643	120923708	120923699	120923699	Nonsense_Mutation	G	A	p.R41*
UCEC	TCGA-AP-A059-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123842457	123842457	Nonsense_Mutation	G	T	p.G148*
UCEC	TCGA-AP-A056-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123843318	123843318	Nonsense_Mutation	G	T	p.E435*
UCEC	TCGA-B5-A0JY-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123843390	123843390	Nonsense_Mutation	G	T	p.E459*
UCEC	TCGA-AP-A051-01	PLEKHA1	ENST00000368990.3,ENST00000433307.1,ENST00000368989.2,ENST00000392799.3,ENST00000368988.1,ENST00000538022.1	chr10	124183714:124183779:124184411:124184475:124186457:124186547,	124184412	124184475	124184473	124184473	Nonsense_Mutation	C	T	p.Q270*
UCEC	TCGA-D1-A103-01	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000368955.3	chr10	124360506:124360539:124361312:124361636:124362615:124362645,	124361313	124361636	124361566	124361566	Nonsense_Mutation	G	A	p.W1199*
UCEC	TCGA-AP-A0LM-01	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3,ENST00000359586.6	chr10	124385448:124385481:124389355:124389509:124389803:124390006,	124389356	124389509	124389463	124389463	Nonsense_Mutation	G	T	p.E1797*
UCEC	TCGA-AX-A05Z-01	ACADSB	ENST00000496730.2,ENST00000358776.4	chr10	124797262:124797363:124799981:124800188:124800724:124800895,	124799982	124800188	124800006	124800006	Nonsense_Mutation	G	T	p.E110*
UCEC	TCGA-AP-A059-01	ACADSB	ENST00000496730.2,ENST00000358776.4	chr10	124797262:124797363:124799981:124800188:124800724:124800895,	124799982	124800188	124800183	124800183	Nonsense_Mutation	G	T	p.E169*
UCEC	TCGA-AP-A0LM-01	CPXM2	ENST00000241305.3	chr10	125521387:125521685:125526488:125526668:125528041:125528238,	125526489	125526668	125526634	125526634	Nonsense_Mutation	C	T	p.W445*
UCEC	TCGA-BS-A0UV-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805533	125805533	Nonsense_Mutation	C	A	p.E66*
UCEC	TCGA-D1-A103-01	CTBP2	ENST00000411419.2,ENST00000309035.6,ENST00000494626.2,ENST00000531469.1,ENST00000334808.6,ENST00000337195.5	chr10	126682423:126682554:126683037:126683252:126686532:126686739,	126683038	126683252	126683226	126683226	Nonsense_Mutation	G	A	p.R738*
UCEC	TCGA-B5-A0JY-01	BCCIP	ENST00000278100.6	chr10	127519988:127520176:127522340:127522515:127529823:127529899,127519988:127520176:127522340:127522515:127524672:127525122,	127522341	127522515	127522501	127522501	Nonsense_Mutation	G	T	p.E254*
UCEC	TCGA-AP-A059-01	DOCK1	ENST00000280333.6	chr10	129179541:129179632:129183053:129183173:129201318:129201408,	129183054	129183173	129183158	129183158	Nonsense_Mutation	C	A	p.Y1349*
UCEC	TCGA-D1-A103-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913402	129913402	Nonsense_Mutation	C	A	p.G424*
UCEC	TCGA-BS-A0TC-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913909	129913909	Nonsense_Mutation	C	A	p.E255*
UCEC	TCGA-BS-A0UF-01	GLRX3	ENST00000481034.1,ENST00000368644.1	chr10	131934662:131934776:131943474:131943583:131958258:131958333,	131943475	131943583	131943557	131943557	Nonsense_Mutation	G	T	p.E59*
UCEC	TCGA-AX-A05Z-01	GLRX3	ENST00000481034.1,ENST00000368644.1	chr10	131973260:131973353:131977605:131977684:131978376:131978585,	131977606	131977684	131977615	131977615	Nonsense_Mutation	G	T	p.E323*
UCEC	TCGA-D1-A17Q-01	GLRX3	ENST00000481034.1,ENST00000368644.1	chr10	131973260:131973353:131977605:131977684:131978376:131978585,	131977606	131977684	131977648	131977648	Nonsense_Mutation	G	T	p.E334*
UCEC	TCGA-AX-A05Z-01	PPP2R2D	ENST00000455566.1,ENST00000490777.2,ENST00000470416.1,ENST00000482010.2	chr10	133758798:133758963:133761033:133761295:133769187:133769284,	133761034	133761295	133761248	133761248	Nonsense_Mutation	C	T	p.R313*
UCEC	TCGA-BS-A0UV-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134459371:134459472:134463921:134464009:134503895:134503959,	134463922	134464009	134463950	134463950	Nonsense_Mutation	G	T	p.E83*
UCEC	TCGA-BS-A0UF-01	TUBGCP2	ENST00000487796.2	chr10	135113488:135113617:135116295:135116484:135122326:135122352,135113488:135114051:135116295:135116484:135122326:135122352,	135116296	135116484	135116412	135116412	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-AP-A051-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1262637	1262637	Nonsense_Mutation	G	A	p.W1512*
UCEC	TCGA-AP-A056-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267354	1267354	Nonsense_Mutation	G	T	p.E3085*
UCEC	TCGA-A5-A0GP-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267606	1267606	Nonsense_Mutation	G	T	p.E3169*
UCEC	TCGA-D1-A17Q-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1272387	1272387	Nonsense_Mutation	G	A	p.W4762*
UCEC	TCGA-AP-A0LM-01	SYT8	ENST00000479089.1	chr11	1855819:1855847:1856323:1856429:1856525:1856689,	1856324	1856429	1856397	1856397	Nonsense_Mutation	G	A	p.W33*
UCEC	TCGA-AP-A0LM-01	SYT8	ENST00000381978.3	chr11	1855819:1855847:1856326:1856429:1856525:1856689,	1856327	1856429	1856397	1856397	Nonsense_Mutation	G	A	p.W33*
UCEC	TCGA-B5-A0JY-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3661226	3661226	Nonsense_Mutation	G	A	p.R145*
UCEC	TCGA-B5-A0JY-01	ART5	ENST00000397067.3	chr11	3660240:3660265:3661075:3661601:3663035:3663094,	3661076	3661601	3661226	3661226	Nonsense_Mutation	G	A	p.R145*
UCEC	TCGA-B5-A11N-01	NUP98	ENST00000324932.7,ENST00000524563.1,ENST00000429801.1	chr11	3707293:3707424:3712576:3712719:3714461:3714605,	3712577	3712719	3712617	3712617	Nonsense_Mutation	G	A	p.R1472*
UCEC	TCGA-AP-A056-01	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720411	3720411	Nonsense_Mutation	C	A	p.E1304*
UCEC	TCGA-D1-A17Q-01	NUP98	ENST00000324932.7,ENST00000355260.3,ENST00000359171.4	chr11	3721839:3722069:3723692:3724122:3726429:3726586,	3723693	3724122	3723763	3723763	Nonsense_Mutation	C	A	p.E1148*
UCEC	TCGA-BS-A0UF-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3793004:3793158:3794861:3794969:3797111:3797251,	3794862	3794969	3794885	3794885	Nonsense_Mutation	C	A	p.E194*
UCEC	TCGA-D1-A17Q-01	TRIM21	ENST00000254436.7	chr11	4408197:4408220:4409529:4409760:4410883:4410979,	4409530	4409760	4409565	4409565	Nonsense_Mutation	G	A	p.R234*
UCEC	TCGA-AX-A05Z-01	TRIM21	ENST00000254436.7	chr11	4408197:4408220:4409529:4409760:4410883:4410979,	4409530	4409760	4409565	4409565	Nonsense_Mutation	G	A	p.R234*
UCEC	TCGA-BS-A0UF-01	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687250	5687250	Nonsense_Mutation	G	A	p.R277*
UCEC	TCGA-BS-A0UF-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717532	5717532	Nonsense_Mutation	G	T	p.E24*
UCEC	TCGA-D1-A103-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717810	5717810	Nonsense_Mutation	C	A	p.C116*
UCEC	TCGA-AP-A056-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717876	5717876	Nonsense_Mutation	G	T	p.G49*
UCEC	TCGA-B5-A0JY-01	FAM160A2	ENST00000265978.4,ENST00000524416.1,ENST00000449352.2	chr11	6244309:6244468:6244839:6245478:6245608:6245937,	6244840	6245478	6245214	6245214	Nonsense_Mutation	C	A	p.E135*
UCEC	TCGA-AX-A063-01	SMPD1	ENST00000531303.1	chr11	6413422:6413426:6414445:6414617:6414846:6414923,6412616:6413386:6414445:6414617:6414846:6414923,6412613:6412733:6414445:6414617:6414846:6414923,	6414446	6414617	6414606	6414606	Nonsense_Mutation	C	T	p.R418*
UCEC	TCGA-D1-A17Q-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000532020.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000534188.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6424548:6424634:6424717:6424774:6424876:6425052,	6424718	6424774	6424729	6424729	Nonsense_Mutation	C	A	p.E315*
UCEC	TCGA-D1-A103-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000529575.1,ENST00000533792.1	chr11	7642165:7642258:7647007:7647122:7649515:7649577,	7647008	7647122	7647053	7647053	Nonsense_Mutation	G	T	p.E253*
UCEC	TCGA-D1-A16X-01	RIC3	ENST00000531450.1	chr11	8132453:8132684:8148205:8148438:8158924:8159014,	8148206	8148438	8148242	8148242	Nonsense_Mutation	C	A	p.E211*
UCEC	TCGA-D1-A16X-01	RIC3	ENST00000524799.1,ENST00000343202.4	chr11	8132453:8132684:8148205:8148351:8190412:8190536,8132453:8132684:8148205:8148351:8158924:8159014,	8148206	8148351	8148242	8148242	Nonsense_Mutation	C	A	p.E211*
UCEC	TCGA-D1-A16X-01	RIC3	ENST00000309737.6,ENST00000539720.1,ENST00000528463.1	chr11	8132453:8132684:8148205:8148354:8158924:8159014,	8148206	8148354	8148242	8148242	Nonsense_Mutation	C	A	p.E211*
UCEC	TCGA-B5-A11R-01	STK33	ENST00000396672.1,ENST00000315204.1,ENST00000396673.1,ENST00000457885.2,ENST00000534493.1,ENST00000447869.1,ENST00000418597.1,ENST00000422559.2	chr11	8486255:8486369:8494709:8494823:8496227:8496302,	8494710	8494823	8494810	8494810	Nonsense_Mutation	G	C	p.S80*
UCEC	TCGA-BS-A0UV-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8739428:8739439:8747619:8747756:8832063:8832196,8739428:8739439:8747619:8747756:8772167:8772272,8739428:8739439:8747619:8747756:8751496:8752756,	8747620	8747756	8747644	8747644	Nonsense_Mutation	C	A	p.E485*
UCEC	TCGA-D1-A17Q-01	ZNF143	ENST00000299606.2,ENST00000396604.1,ENST00000530463.1,ENST00000396597.3,ENST00000396602.2	chr11	9501018:9501093:9516192:9516312:9517849:9517925,	9516193	9516312	9516259	9516259	Nonsense_Mutation	C	T	p.R238*
UCEC	TCGA-AP-A051-01	SBF2	ENST00000530741.1,ENST00000256190.8	chr11	9850902:9851043:9853770:9853967:9861044:9861150,	9853771	9853967	9853898	9853898	Nonsense_Mutation	A	T	p.Y1175*
UCEC	TCGA-B5-A0JY-01	RNF141	ENST00000528665.1	chr11	10552189:10552298:10555562:10555752:10562668:10562737,	10555563	10555752	10555654	10555654	Nonsense_Mutation	C	A	p.E18*
UCEC	TCGA-AP-A059-01	CTR9	ENST00000361367.2	chr11	10786094:10786278:10787948:10788037:10789352:10789538,	10787949	10788037	10788010	10788010	Nonsense_Mutation	G	A	p.W553*
UCEC	TCGA-B5-A11N-01	USP47	ENST00000399455.2,ENST00000539466.1,ENST00000527733.1,ENST00000339865.5	chr11	11944270:11944438:11950980:11951112:11951590:11951667,	11950981	11951112	11951046	11951046	Nonsense_Mutation	T	G	p.Y416*
UCEC	TCGA-AX-A05Z-01	CYP2R1	ENST00000334636.5,ENST00000530609.1	chr11	14900659:14900753:14901681:14902314:14907321:14907387,14900659:14900989:14901681:14902314:14907321:14907387,	14901682	14902314	14902249	14902249	Nonsense_Mutation	G	A	p.R145*
UCEC	TCGA-B5-A11E-01	NUCB2	ENST00000323688.6,ENST00000529010.1,ENST00000458064.2,ENST00000533773.1,ENST00000527580.1	chr11	17332466:17332557:17332739:17332830:17333418:17333477,	17332740	17332830	17332761	17332761	Nonsense_Mutation	G	T	p.E231*
UCEC	TCGA-D1-A17M-01	USH1C	ENST00000005226.7	chr11	17515878:17515923:17517115:17517224:17518304:17518360,	17517116	17517224	17517181	17517181	Nonsense_Mutation	G	A	p.R864*
UCEC	TCGA-AP-A0LM-01	GTF2H1	ENST00000265963.4,ENST00000453096.2,ENST00000418116.2,ENST00000543932.1	chr11	18354606:18354775:18357300:18357493:18359655:18359821,	18357301	18357493	18357411	18357411	Nonsense_Mutation	C	T	p.R89*
UCEC	TCGA-AP-A056-01	ZDHHC13	ENST00000446113.2	chr11	19138730:19138823:19164524:19164670:19167727:19167850,	19164525	19164670	19164615	19164615	Nonsense_Mutation	G	T	p.E40*
UCEC	TCGA-AX-A05Z-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	21581734:21581928:21592309:21592486:21594730:21594955,	21592310	21592486	21592382	21592382	Nonsense_Mutation	G	T	p.E685*
UCEC	TCGA-AX-A05Z-01	LUZP2	ENST00000336930.6,ENST00000533227.1	chr11	24784791:24784854:24927536:24927599:24936021:24936084,	24927537	24927599	24927594	24927594	Nonsense_Mutation	G	T	p.E152*
UCEC	TCGA-B5-A0JY-01	SLC5A12	ENST00000280467.6,ENST00000527405.1,ENST00000533617.1,ENST00000396005.3	chr11	26725077:26725218:26725339:26725494:26730858:26730926,	26725340	26725494	26725356	26725356	Nonsense_Mutation	G	A	p.R222*
UCEC	TCGA-AX-A0J0-01	CCDC34	ENST00000328697.6	chr11	27362938:27363097:27371878:27371986:27378949:27379088,	27371879	27371986	27371947	27371947	Nonsense_Mutation	C	A	p.E180*
UCEC	TCGA-BS-A0UF-01	RCN1	ENST00000054950.3	chr11	32112449:32112996:32118689:32118883:32119895:32120004,	32118690	32118883	32118703	32118703	Nonsense_Mutation	C	T	p.R90*
UCEC	TCGA-D1-A103-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635451	32635451	Nonsense_Mutation	C	A	p.E805*
UCEC	TCGA-BS-A0UV-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635562	32635562	Nonsense_Mutation	C	A	p.E768*
UCEC	TCGA-AP-A0LM-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636195	32636195	Nonsense_Mutation	C	A	p.G557*
UCEC	TCGA-BS-A0UV-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636276	32636276	Nonsense_Mutation	C	A	p.E530*
UCEC	TCGA-AP-A056-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636285	32636285	Nonsense_Mutation	C	A	p.G527*
UCEC	TCGA-AP-A056-01	HIPK3	ENST00000525975.1,ENST00000303296.4,ENST00000456517.1,ENST00000379016.3	chr11	33350145:33350179:33358620:33358740:33360302:33360388,	33358621	33358740	33358624	33358624	Nonsense_Mutation	C	T	p.R409*
UCEC	TCGA-AX-A05Z-01	HIPK3	ENST00000525975.1,ENST00000303296.4,ENST00000456517.1,ENST00000379016.3	chr11	33350145:33350179:33358620:33358740:33360302:33360388,	33358621	33358740	33358624	33358624	Nonsense_Mutation	C	T	p.R409*
UCEC	TCGA-B5-A11G-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000530013.1,ENST00000529137.1,ENST00000448981.2	chr11	33790396:33790560:33792286:33792376:33795939:33796050,	33792287	33792376	33792360	33792360	Nonsense_Mutation	G	A	p.R41*
UCEC	TCGA-B5-A11G-01	FBXO3	ENST00000530401.1	chr11	33790396:33790560:33792286:33792361:33795939:33796064,	33792287	33792361	33792360	33792360	Nonsense_Mutation	G	A	p.R41*
UCEC	TCGA-D1-A17M-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34664174:34664274:34667985:34668231:34670565:34670628,	34667986	34668231	34668056	34668056	Nonsense_Mutation	G	A	p.W56*
UCEC	TCGA-AX-A0J1-01	PDHX	ENST00000448838.3,ENST00000227868.4	chr11	34981966:34982065:34988186:34988361:34991685:34991833,	34988187	34988361	34988347	34988347	Nonsense_Mutation	C	T	p.Q268*
UCEC	TCGA-D1-A103-01	CD44	ENST00000352818.4	chr11	35208408:35208447:35211381:35211612:35236398:35236408,35208408:35208447:35211381:35211612:35240862:35240934,	35211382	35211612	35211502	35211502	Nonsense_Mutation	G	T	p.G164*
UCEC	TCGA-D1-A103-01	CD44	ENST00000279452.6	chr11	35208408:35208447:35211381:35211519:35236398:35236408,	35211382	35211519	35211502	35211502	Nonsense_Mutation	G	T	p.G164*
UCEC	TCGA-BS-A0UF-01	PAMR1	ENST00000527605.1,ENST00000278360.3	chr11	35463195:35463241:35473435:35473486:35489548:35489656,	35473436	35473486	35473451	35473451	Nonsense_Mutation	C	A	p.E286*
UCEC	TCGA-BS-A0TC-01	API5	ENST00000378852.3,ENST00000534600.1,ENST00000531273.1	chr11	43333645:43333746:43340189:43340351:43342370:43342464,	43340190	43340351	43340247	43340247	Nonsense_Mutation	C	T	p.R43*
UCEC	TCGA-BS-A0UV-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000311027.5,ENST00000395344.3,ENST00000402192.2	chr11	47346021:47346128:47348288:47348358:47350208:47350255,	47348289	47348358	47348331	47348331	Nonsense_Mutation	C	T	p.R1589*
UCEC	TCGA-B5-A0JY-01	FNBP4	ENST00000263773.5,ENST00000534003.1	chr11	47758167:47758292:47765504:47765715:47767607:47767751,	47765505	47765715	47765580	47765580	Nonsense_Mutation	G	A	p.R461*
UCEC	TCGA-B5-A11E-01	SSRP1	ENST00000526696.1,ENST00000278412.2,ENST00000529002.1	chr11	57100112:57100329:57100432:57100623:57100908:57101014,	57100433	57100623	57100435	57100435	Nonsense_Mutation	C	A	p.E179*
UCEC	TCGA-B5-A11E-01	ZDHHC5	ENST00000287169.3	chr11	57435576:57435659:57439492:57440666:57449893:57450015,	57439493	57440666	57440572	57440572	Nonsense_Mutation	G	T	p.E4*
UCEC	TCGA-BS-A0UA-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577603	57577603	Nonsense_Mutation	C	T	p.R820*
UCEC	TCGA-D1-A17Q-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577669	57577669	Nonsense_Mutation	G	T	p.E842*
UCEC	TCGA-AP-A051-01	PATL1	ENST00000300146.9	chr11	59418226:59418286:59419016:59419114:59419936:59420060,	59419017	59419114	59419112	59419112	Nonsense_Mutation	G	A	p.Q477*
UCEC	TCGA-AX-A0J1-01	MS4A14	ENST00000395001.1,ENST00000534688.1,ENST00000525397.1,ENST00000300187.6,ENST00000531783.1	chr11	60165324:60165453:60167876:60167927:60170384:60170534,	60167877	60167927	60167889	60167889	Nonsense_Mutation	G	T	p.G94*
UCEC	TCGA-AP-A059-01	MS4A1	ENST00000532073.1	chr11	60231760:60231817:60233393:60233630:60234431:60234533,60231760:60231817:60233393:60233630:60234470:60234533,	60233394	60233630	60233603	60233603	Nonsense_Mutation	C	A	p.Y182*
UCEC	TCGA-AP-A051-01	TMEM132A	ENST00000535480.1	chr11	60702789:60702915:60703335:60703488:60704218:60704631,	60703336	60703488	60703356	60703356	Nonsense_Mutation	G	A	p.W684*
UCEC	TCGA-AP-A059-01	CD6	ENST00000346437.4,ENST00000344931.5,ENST00000352009.5,ENST00000452451.2,ENST00000313421.7,ENST00000344028.5	chr11	60776005:60776317:60777043:60777346:60778541:60778607,	60777044	60777346	60777246	60777246	Nonsense_Mutation	C	A	p.Y328*
UCEC	TCGA-B5-A0JY-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000301764.7	chr11	61093082:61093180:61094250:61094365:61099014:61099163,61093082:61093180:61094250:61094365:61096834:61097056,	61094251	61094365	61094320	61094320	Nonsense_Mutation	C	A	p.E199*
UCEC	TCGA-B5-A0JY-01	SCGB1A1	ENST00000278282.2	chr11	62186506:62186622:62189692:62189880:62190530:62190667,	62189693	62189880	62189860	62189860	Nonsense_Mutation	G	T	p.E75*
UCEC	TCGA-AX-A0J0-01	TTC9C	ENST00000316461.4,ENST00000532583.1	chr11	62496294:62496558:62502853:62503036:62505759:62505962,	62502854	62503036	62502898	62502898	Nonsense_Mutation	G	T	p.E95*
UCEC	TCGA-D1-A17Q-01	NXF1	ENST00000294172.2,ENST00000530875.1,ENST00000531709.2,ENST00000532297.1,ENST00000531131.1,ENST00000439713.2	chr11	62567848:62567958:62568565:62568673:62568800:62568889,	62568566	62568673	62568568	62568568	Nonsense_Mutation	C	A	p.E302*
UCEC	TCGA-AX-A05Z-01	ATL3	ENST00000332645.4,ENST00000398868.3,ENST00000538786.1	chr11	63403678:63403806:63410828:63410967:63411640:63411733,	63410829	63410967	63410931	63410931	Nonsense_Mutation	G	A	p.R250*
UCEC	TCGA-AX-A0J0-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63487586	63487586	Nonsense_Mutation	G	T	p.E519*
UCEC	TCGA-AX-A0J0-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63487586	63487586	Nonsense_Mutation	G	T	p.E519*
UCEC	TCGA-BS-A0UV-01	VEGFB	ENST00000309422.2,ENST00000426086.2	chr11	64003382:64003481:64003725:64003799:64004658:64004694,	64003726	64003799	64003777	64003777	Nonsense_Mutation	G	T	p.E118*
UCEC	TCGA-BS-A0UV-01	PPP2R5B	ENST00000528530.1,ENST00000164133.2	chr11	64695273:64695375:64695537:64695630:64695766:64695897,	64695538	64695630	64695547	64695547	Nonsense_Mutation	G	T	p.E170*
UCEC	TCGA-D1-A103-01	NAALADL1	ENST00000529685.1	chr11	64813528:64813586:64813660:64813998:64814946:64815037,	64813661	64813998	64813875	64813875	Nonsense_Mutation	C	A	p.E575*
UCEC	TCGA-AP-A059-01	DPF2	ENST00000530993.1,ENST00000528416.1,ENST00000532264.1,ENST00000252268.4	chr11	65108436:65108544:65108869:65109033:65111215:65111308,	65108870	65109033	65108959	65108959	Nonsense_Mutation	C	T	p.R131*
UCEC	TCGA-BS-A0UV-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65349944	65349944	Nonsense_Mutation	G	T	p.E601*
UCEC	TCGA-D1-A16X-01	NPAS4	ENST00000311034.2	chr11	66190354:66190412:66190593:66190703:66191048:66191184,	66190594	66190703	66190641	66190641	Nonsense_Mutation	C	A	p.S249*
UCEC	TCGA-AX-A0J0-01	DPP3	ENST00000541961.1,ENST00000530165.1,ENST00000360510.2,ENST00000532677.1,ENST00000531863.1,ENST00000453114.1	chr11	66258964:66259095:66259168:66259227:66260186:66260381,	66259169	66259227	66259218	66259218	Nonsense_Mutation	G	T	p.E327*
UCEC	TCGA-AX-A05Z-01	RBM4B	ENST00000310046.4	chr11	66433018:66433049:66436085:66436762:66444138:66444562,	66436086	66436762	66436583	66436583	Nonsense_Mutation	G	A	p.R198*
UCEC	TCGA-B5-A0JY-01	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66466876:66467079:66467996:66468753:66469054:66469192,	66467997	66468753	66468401	66468401	Nonsense_Mutation	G	A	p.R1057*
UCEC	TCGA-D1-A167-01	SSH3	ENST00000376757.5,ENST00000308127.4,ENST00000532181.1,ENST00000308298.7	chr11	67071593:67071626:67072243:67072478:67074308:67074381,	67072244	67072478	67072333	67072333	Nonsense_Mutation	C	T	p.Q16*
UCEC	TCGA-D1-A167-01	SSH3	ENST00000532881.1	chr11	67071593:67071626:67072247:67072478:67074308:67074381,	67072248	67072478	67072333	67072333	Nonsense_Mutation	C	T	p.Q16*
UCEC	TCGA-AX-A0J0-01	PPFIA1	ENST00000526262.1,ENST00000389547.3,ENST00000532443.1,ENST00000530798.1,ENST00000532504.1,ENST00000253925.7	chr11	70181718:70181800:70183470:70183533:70184479:70184540,	70183471	70183533	70183486	70183486	Nonsense_Mutation	G	T	p.E482*
UCEC	TCGA-AP-A0LM-01	RNF121	ENST00000545854.1,ENST00000526549.1,ENST00000361756.3,ENST00000530655.1,ENST00000490867.1,ENST00000530137.1	chr11	71671795:71671937:71701642:71701763:71705764:71705823,71698049:71698157:71701642:71701763:71705764:71705823,	71701643	71701763	71701700	71701700	Nonsense_Mutation	C	A	p.Y188*
UCEC	TCGA-AX-A05Z-01	XRRA1	ENST00000527087.1	chr11	74559169:74559507:74562132:74562248:74563033:74563109,74559169:74559507:74562132:74562248:74617283:74617397,	74562133	74562248	74562192	74562192	Nonsense_Mutation	G	A	p.R433*
UCEC	TCGA-B5-A0JY-01	XRRA1	ENST00000527087.1	chr11	74559169:74559507:74562132:74562248:74563033:74563109,74559169:74559507:74562132:74562248:74617283:74617397,	74562133	74562248	74562192	74562192	Nonsense_Mutation	G	A	p.R433*
UCEC	TCGA-BS-A0UF-01	XRRA1	ENST00000527087.1	chr11	74559169:74559507:74562132:74562248:74563033:74563109,74559169:74559507:74562132:74562248:74617283:74617397,	74562133	74562248	74562192	74562192	Nonsense_Mutation	G	A	p.R433*
UCEC	TCGA-AP-A0LM-01	ACER3	ENST00000527508.1	chr11	76701582:76701618:76709806:76709865:76722373:76722419,	76709807	76709865	76709843	76709843	Nonsense_Mutation	C	T	p.R159*
UCEC	TCGA-D1-A17H-01	PAK1	ENST00000528203.1,ENST00000356341.3,ENST00000530617.1,ENST00000278568.4	chr11	77064580:77064644:77066712:77066887:77069942:77069998,	77066713	77066887	77066713	77066713	Nonsense_Mutation	G	A	p.R258*
UCEC	TCGA-B5-A11H-01	GAB2	ENST00000361507.4	chr11	77961402:77961446:77991646:77991947:78128691:78128817,	77991647	77991947	77991782	77991782	Nonsense_Mutation	G	A	p.Q81*
UCEC	TCGA-B5-A0JY-01	TMEM126B	ENST00000531477.1	chr11	85342188:85342360:85342730:85342852:85345129:85345220,85339673:85339732:85342730:85342852:85345129:85345220,85340175:85340306:85342730:85342852:85345129:85345220,	85342731	85342852	85342821	85342821	Nonsense_Mutation	G	T	p.E28*
UCEC	TCGA-BS-A0UF-01	SYTL2	ENST00000525423.1,ENST00000359152.5,ENST00000528231.1,ENST00000316356.4	chr11	85425521:85425550:85429832:85429886:85431900:85432002,	85429833	85429886	85429857	85429857	Nonsense_Mutation	C	A	p.E853*
UCEC	TCGA-B5-A0JY-01	PICALM	ENST00000532317.1,ENST00000531771.1,ENST00000356360.5,ENST00000531558.1,ENST00000534412.1,ENST00000526033.1,ENST00000528398.1,ENST00000393346.3	chr11	85722154:85722179:85723323:85723435:85725912:85726006,	85723324	85723435	85723423	85723423	Nonsense_Mutation	C	A	p.E187*
UCEC	TCGA-BS-A0UF-01	PICALM	ENST00000532317.1,ENST00000531771.1,ENST00000356360.5,ENST00000531558.1,ENST00000534412.1,ENST00000526033.1,ENST00000528398.1,ENST00000393346.3	chr11	85722154:85722179:85723323:85723435:85725912:85726006,	85723324	85723435	85723423	85723423	Nonsense_Mutation	C	A	p.E187*
UCEC	TCGA-B5-A11E-01	ME3	ENST00000526504.1	chr11	86161006:86161044:86161342:86161440:86176132:86176242,86161006:86161044:86161342:86161440:86168407:86168801,	86161343	86161440	86161399	86161399	Nonsense_Mutation	G	A	p.R321*
UCEC	TCGA-AX-A05Z-01	CTSC	ENST00000527018.1,ENST00000227266.5	chr11	88029326:88029432:88033697:88033813:88042330:88042486,	88033698	88033813	88033707	88033707	Nonsense_Mutation	G	A	p.R250*
UCEC	TCGA-D1-A103-01	CHORDC1	ENST00000320585.6,ENST00000525317.1,ENST00000529987.1,ENST00000457199.2,ENST00000533724.1	chr11	89936475:89936595:89938627:89938733:89939369:89939440,	89938628	89938733	89938724	89938724	Nonsense_Mutation	G	T	p.Y191*
UCEC	TCGA-AX-A05Z-01	SLC36A4	ENST00000534116.1,ENST00000526735.1,ENST00000529184.1,ENST00000326402.4	chr11	92887322:92887443:92895871:92896041:92899083:92899182,	92895872	92896041	92895893	92895893	Nonsense_Mutation	A	C	p.L339*
UCEC	TCGA-B5-A0JY-01	SLC36A4	ENST00000534116.1,ENST00000526735.1,ENST00000529184.1,ENST00000326402.4	chr11	92887322:92887443:92895871:92896041:92899083:92899182,	92895872	92896041	92896014	92896014	Nonsense_Mutation	C	A	p.E299*
UCEC	TCGA-BS-A0UV-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471597	93471597	Nonsense_Mutation	C	A	p.E32*
UCEC	TCGA-BS-A0UV-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471597	93471597	Nonsense_Mutation	C	A	p.E32*
UCEC	TCGA-D1-A16X-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94532846	94532846	Nonsense_Mutation	G	T	p.E164*
UCEC	TCGA-BS-A0UF-01	SESN3	ENST00000278499.2	chr11	94917583:94917758:94918419:94918656:94922942:94923125,94917583:94917758:94918419:94918656:94924567:94924765,	94918420	94918656	94918515	94918515	Nonsense_Mutation	C	A	p.G223*
UCEC	TCGA-D1-A103-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117179	96117179	Nonsense_Mutation	C	A	p.E245*
UCEC	TCGA-AP-A0LM-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117407	96117407	Nonsense_Mutation	C	A	p.E169*
UCEC	TCGA-AX-A05Z-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117770	96117770	Nonsense_Mutation	C	A	p.E48*
UCEC	TCGA-B5-A11E-01	PGR	ENST00000325455.5,ENST00000263463.5,ENST00000534013.1,ENST00000533207.1,ENST00000530764.1	chr11	100912675:100912833:100920659:100920790:100922154:100922201,	100920660	100920790	100920777	100920777	Nonsense_Mutation	C	A	p.E791*
UCEC	TCGA-B5-A11R-01	TRPC6	ENST00000348423.4,ENST00000344327.3,ENST00000360497.4	chr11	101344239:101344504:101347031:101347265:101353679:101353896,	101347032	101347265	101347129	101347129	Nonsense_Mutation	C	T	p.W549*
UCEC	TCGA-B5-A11J-01	BIRC2	ENST00000532672.1	chr11	102219328:102219495:102220608:102221480:102221574:102221674,	102220609	102221480	102221167	102221167	Nonsense_Mutation	G	A	p.W194*
UCEC	TCGA-B5-A11J-01	BIRC2	ENST00000227758.2	chr11	102217999:102218107:102219328:102221480:102221574:102221674,	102219329	102221480	102221167	102221167	Nonsense_Mutation	G	A	p.W194*
UCEC	TCGA-B5-A11J-01	BIRC2	ENST00000530675.1	chr11	102217999:102218107:102220731:102221480:102221574:102221674,	102220732	102221480	102221167	102221167	Nonsense_Mutation	G	A	p.W194*
UCEC	TCGA-AX-A0J0-01	BIRC2	ENST00000527910.1,ENST00000530675.1,ENST00000532672.1,ENST00000227758.2	chr11	102239036:102239279:102248226:102248481:102248587:102248629,	102248227	102248481	102248382	102248382	Nonsense_Mutation	G	T	p.E508*
UCEC	TCGA-D1-A103-01	DYNC2H1	ENST00000334267.7,ENST00000398093.3,ENST00000375735.2	chr11	102984831:102984967:102985905:102986024:102987298:102987443,	102985906	102986024	102986001	102986001	Nonsense_Mutation	G	T	p.E200*
UCEC	TCGA-AP-A059-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104877934	104877934	Nonsense_Mutation	A	C	p.Y116*
UCEC	TCGA-B5-A0JY-01	CASP1	ENST00000527979.1,ENST00000393136.4,ENST00000525825.1,ENST00000593315.1	chr11	104901056:104901230:104901891:104902007:104904934:104905085,	104901892	104902007	104901930	104901930	Nonsense_Mutation	C	A	p.E139*
UCEC	TCGA-D1-A17Q-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299910	107299910	Nonsense_Mutation	C	A	p.E350*
UCEC	TCGA-AX-A0J0-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299925	107299925	Nonsense_Mutation	C	A	p.E345*
UCEC	TCGA-AX-A0J0-01	ACAT1	ENST00000528370.1,ENST00000527942.1,ENST00000299355.6,ENST00000265838.4	chr11	108004620:108004664:108004947:108005043:108005868:108005968,	108004948	108005043	108004962	108004962	Nonsense_Mutation	G	T	p.E85*
UCEC	TCGA-AX-A05Z-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108043709	108043709	Nonsense_Mutation	C	A	p.E668*
UCEC	TCGA-BS-A0UF-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108099904:108100050:108106396:108106561:108114679:108114811,	108106397	108106561	108106457	108106457	Nonsense_Mutation	C	A	p.S131*
UCEC	TCGA-B5-A0JY-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108114679:108114845:108115514:108115753:108117690:108117854,	108115515	108115753	108115600	108115600	Nonsense_Mutation	C	T	p.R250*
UCEC	TCGA-AX-A05Z-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108114679:108114845:108115514:108115753:108117690:108117854,	108115515	108115753	108115600	108115600	Nonsense_Mutation	C	T	p.R250*
UCEC	TCGA-B5-A11E-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108117690:108117854:108119659:108119829:108121427:108121799,	108119660	108119829	108119762	108119762	Nonsense_Mutation	G	T	p.E390*
UCEC	TCGA-B5-A11E-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000532765.1,ENST00000278616.4,ENST00000533690.1	chr11	108186549:108186638:108186737:108186840:108188099:108188194,	108186738	108186840	108186742	108186742	Nonsense_Mutation	C	T	p.R2034*
UCEC	TCGA-AX-A05Z-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108202605:108202764:108203488:108203627:108204612:108204635,	108203489	108203627	108203492	108203492	Nonsense_Mutation	C	T	p.R2598*
UCEC	TCGA-AX-A05Z-01	C11orf65	ENST00000533583.1	chr11	108277822:108277876:108302472:108302565:108332205:108332295,108277489:108277690:108302472:108302565:108332205:108332295,	108302473	108302565	108302475	108302475	Nonsense_Mutation	C	A	p.E58*
UCEC	TCGA-D1-A17Q-01	DDX10	ENST00000322536.3,ENST00000526794.1	chr11	108577465:108577564:108586605:108586693:108590523:108590612,	108586606	108586693	108586616	108586616	Nonsense_Mutation	G	T	p.E445*
UCEC	TCGA-D1-A17Q-01	DDX10	ENST00000322536.3,ENST00000526794.1	chr11	108577465:108577564:108586605:108586693:108590523:108590612,	108586606	108586693	108586679	108586679	Nonsense_Mutation	G	T	p.E466*
UCEC	TCGA-BS-A0UF-01	RDX	ENST00000530301.1	chr11	110128903:110128914:110134684:110134959:110143260:110143344,	110134685	110134959	110134830	110134830	Nonsense_Mutation	C	A	p.E108*
UCEC	TCGA-B5-A0JY-01	RDX	ENST00000530301.1	chr11	110128903:110128914:110134684:110134959:110143260:110143344,	110134685	110134959	110134830	110134830	Nonsense_Mutation	C	A	p.E108*
UCEC	TCGA-D1-A17Q-01	RDX	ENST00000530301.1	chr11	110128903:110128914:110134684:110134959:110143260:110143344,	110134685	110134959	110134866	110134866	Nonsense_Mutation	C	A	p.E96*
UCEC	TCGA-D1-A17Q-01	PPP2R1B	ENST00000311129.5,ENST00000341980.6,ENST00000527614.1	chr11	111630537:111630675:111631542:111631775:111635528:111635629,	111631543	111631775	111631718	111631718	Nonsense_Mutation	C	A	p.E122*
UCEC	TCGA-AX-A05Z-01	TTC12	ENST00000393020.1,ENST00000464224.1,ENST00000529221.1,ENST00000483239.2,ENST00000534793.1,ENST00000314756.3,ENST00000494714.1	chr11	113205748:113205759:113209495:113209556:113210007:113210161,	113209496	113209556	113209523	113209523	Nonsense_Mutation	G	T	p.E202*
UCEC	TCGA-AP-A059-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000540438.1,ENST00000260188.5,ENST00000003302.4	chr11	113669783:113670137:113672204:113672400:113673879:113674003,	113672205	113672400	113672230	113672230	Nonsense_Mutation	G	T	p.C1011*
UCEC	TCGA-AP-A051-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000540438.1,ENST00000260188.5	chr11	113675394:113675473:113675589:113675768:113679019:113679159,	113675590	113675768	113675639	113675639	Nonsense_Mutation	G	A	p.R844*
UCEC	TCGA-AP-A059-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000540438.1,ENST00000260188.5	chr11	113675394:113675473:113675589:113675768:113679019:113679159,	113675590	113675768	113675639	113675639	Nonsense_Mutation	G	A	p.R844*
UCEC	TCGA-AX-A0J1-01	USP28	ENST00000542033.1,ENST00000545540.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113704141:113704279:113704970:113705057:113711319:113711479,	113704971	113705057	113704982	113704982	Nonsense_Mutation	G	A	p.R204*
UCEC	TCGA-B5-A0JY-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116636077:116636162:116640844:116640938:116643537:116643703,	116640845	116640938	116640871	116640871	Nonsense_Mutation	C	A	p.E71*
UCEC	TCGA-BS-A0UF-01	APOA1	ENST00000375323.1,ENST00000236850.4,ENST00000375320.1,ENST00000359492.2	chr11	116706979:116707127:116707716:116707873:116708060:116708123,	116707717	116707873	116707817	116707817	Nonsense_Mutation	G	A	p.R34*
UCEC	TCGA-AP-A056-01	CEP164	ENST00000533223.1,ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117261492:117261624:117261714:117261931:117262941:117263019,	117261715	117261931	117261929	117261929	Nonsense_Mutation	G	T	p.E761*
UCEC	TCGA-B5-A0JY-01	CEP164	ENST00000533223.1,ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117261492:117261624:117261714:117261931:117262941:117263019,	117261715	117261931	117261929	117261929	Nonsense_Mutation	G	T	p.E761*
UCEC	TCGA-BS-A0UF-01	CD3D	ENST00000392884.2	chr11	118210165:118210209:118211089:118211308:118213267:118213346,	118211090	118211308	118211093	118211093	Nonsense_Mutation	G	A	p.R91*
UCEC	TCGA-AX-A05Z-01	UBE4A	ENST00000252108.3	chr11	118243221:118243381:118243800:118244003:118244208:118244400,	118243801	118244003	118243914	118243914	Nonsense_Mutation	C	T	p.R286*
UCEC	TCGA-AX-A05Z-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118633920:118634015:118635916:118636063:118638930:118639060,	118635917	118636063	118636040	118636040	Nonsense_Mutation	C	A	p.E175*
UCEC	TCGA-BS-A0UF-01	VPS11	ENST00000531528.2,ENST00000527798.1,ENST00000300793.6,ENST00000529838.2	chr11	118948210:118948357:118948587:118948776:118948882:118949044,	118948588	118948776	118948606	118948606	Nonsense_Mutation	C	T	p.R530*
UCEC	TCGA-AP-A051-01	VPS11	ENST00000531528.2,ENST00000527798.1,ENST00000300793.6,ENST00000529838.2	chr11	118949891:118950010:118951801:118952024:118952168:118952674,	118951802	118952024	118951995	118951995	Nonsense_Mutation	C	T	p.R877*
UCEC	TCGA-A5-A0VP-01	VPS11	ENST00000531528.2,ENST00000527798.1,ENST00000300793.6,ENST00000529838.2	chr11	118949891:118950010:118951801:118952024:118952168:118952674,	118951802	118952024	118951995	118951995	Nonsense_Mutation	C	T	p.R877*
UCEC	TCGA-D1-A17Q-01	CCDC153	ENST00000415318.1,ENST00000375140.3	chr11	119065632:119065704:119066133:119066209:119066508:119066584,	119066134	119066209	119066179	119066179	Nonsense_Mutation	C	A	p.E7*
UCEC	TCGA-BS-A0UV-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120302479:120302620:120308016:120308091:120310837:120310930,	120308017	120308091	120308038	120308038	Nonsense_Mutation	G	T	p.E316*
UCEC	TCGA-AX-A05Z-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000532823.1,ENST00000532993.1,ENST00000356641.3	chr11	120319817:120319923:120322220:120322433:120327826:120327959,	120322221	120322433	120322337	120322337	Nonsense_Mutation	G	T	p.E654*
UCEC	TCGA-AP-A051-01	TBCEL	ENST00000533712.1	chr11	120925760:120926017:120929053:120929180:120930677:120930794,120924338:120924441:120929053:120929180:120930677:120930794,	120929054	120929180	120929158	120929158	Nonsense_Mutation	C	T	p.R273*
UCEC	TCGA-B5-A11E-01	FEZ1	ENST00000392709.4	chr11	125325905:125326002:125330393:125330562:125351429:125351493,	125330394	125330562	125330511	125330511	Nonsense_Mutation	C	A	p.E184*
UCEC	TCGA-D1-A16X-01	FEZ1	ENST00000278919.3,ENST00000532981.1	chr11	125333379:125333466:125351429:125351529:125359362:125359718,	125351430	125351529	125351486	125351486	Nonsense_Mutation	C	A	p.E119*
UCEC	TCGA-AP-A059-01	PATE4	ENST00000457514.2	chr11	125703210:125703312:125707762:125707879:125708200:125709964,	125707763	125707879	125707872	125707872	Nonsense_Mutation	T	G	p.Y56*
UCEC	TCGA-D1-A17Q-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790490	133790490	Nonsense_Mutation	C	A	p.E1044*
UCEC	TCGA-AX-A0J0-01	NCAPD3	ENST00000534548.2,ENST00000530396.1,ENST00000525964.2	chr11	134038363:134038497:134038811:134038949:134046201:134046281,	134038812	134038949	134038879	134038879	Nonsense_Mutation	C	A	p.E1058*
UCEC	TCGA-B5-A11E-01	SLC6A13	ENST00000539260.1,ENST00000343164.4,ENST00000536842.1	chr12	347113:347176:369016:369223:371954:371982,352844:352979:369016:369223:371954:371982,	369017	369223	369115	369115	Nonsense_Mutation	C	T	p.W35*
UCEC	TCGA-AP-A0LM-01	ADIPOR2	ENST00000357103.4	chr12	1800192:1800357:1863423:1863680:1882007:1882090,	1863424	1863680	1863555	1863555	Nonsense_Mutation	G	T	p.E16*
UCEC	TCGA-A5-A0VP-01	ADIPOR2	ENST00000357103.4	chr12	1800192:1800357:1863423:1863680:1882007:1882090,	1863424	1863680	1863600	1863600	Nonsense_Mutation	C	T	p.R31*
UCEC	TCGA-AP-A056-01	ADIPOR2	ENST00000357103.4,ENST00000535774.1	chr12	1882088:1882127:1887019:1887191:1889616:1889684,	1887020	1887191	1887161	1887161	Nonsense_Mutation	G	T	p.E145*
UCEC	TCGA-D1-A16X-01	CACNA1C	ENST00000480911.1,ENST00000399637.1,ENST00000399644.1,ENST00000399591.1,ENST00000399641.1,ENST00000399601.1,ENST00000399629.1,ENST00000327702.7	chr12	2706395:2706455:2706602:2706662:2711019:2711126,2705039:2705169:2706602:2706662:2711019:2711126,	2706603	2706662	2706648	2706648	Nonsense_Mutation	G	T	p.E967*
UCEC	TCGA-AP-A059-01	TSPAN9	ENST00000537971.1,ENST00000011898.5	chr12	3390363:3390495:3390899:3390983:3392210:3394399,	3390900	3390983	3390926	3390926	Nonsense_Mutation	G	A	p.W197*
UCEC	TCGA-BS-A0TC-01	C12orf4	ENST00000535030.1	chr12	4643322:4643468:4645182:4645385:4647574:4647609,	4645183	4645385	4645321	4645321	Nonsense_Mutation	C	A	p.E14*
UCEC	TCGA-BS-A0TC-01	C12orf4	ENST00000545746.1	chr12	4643322:4643468:4645182:4645377:4647574:4647609,	4645183	4645377	4645321	4645321	Nonsense_Mutation	C	A	p.E14*
UCEC	TCGA-AP-A0LM-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4737875	4737875	Nonsense_Mutation	C	A	p.E65*
UCEC	TCGA-B5-A0JY-01	ANO2	ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5674723:5674829:5684999:5685181:5687120:5687173,	5685000	5685181	5685037	5685037	Nonsense_Mutation	C	A	p.E862*
UCEC	TCGA-BS-A0UV-01	ANO2	ENST00000541874.1,ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5721821:5721922:5722066:5722124:5724351:5724461,	5722067	5722124	5722072	5722072	Nonsense_Mutation	C	A	p.E661*
UCEC	TCGA-AX-A0J0-01	ANO2	ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5860001:5860136:5908672:5908737:5915217:5915259,	5908673	5908737	5908725	5908725	Nonsense_Mutation	C	A	p.E331*
UCEC	TCGA-D1-A17Q-01	TNFRSF1A	ENST00000543995.1,ENST00000540022.1,ENST00000537842.1,ENST00000162749.2,ENST00000534885.1,ENST00000539372.1	chr12	6440018:6440092:6442234:6442313:6442532:6442608,	6442235	6442313	6442260	6442260	Nonsense_Mutation	C	A	p.E176*
UCEC	TCGA-BS-A0UV-01	LTBR	ENST00000541102.1,ENST00000535739.1,ENST00000544454.1,ENST00000228918.4,ENST00000536876.1,ENST00000539925.1	chr12	6494392:6494545:6495231:6495328:6495512:6495537,	6495232	6495328	6495234	6495234	Nonsense_Mutation	G	T	p.E159*
UCEC	TCGA-AX-A05Z-01	CD4	ENST00000536610.1,ENST00000536590.1,ENST00000011653.4	chr12	6909237:6909353:6909472:6909637:6923307:6923399,	6909473	6909637	6909520	6909520	Nonsense_Mutation	A	T	p.K33*
UCEC	TCGA-AP-A059-01	CDCA3	ENST00000535406.1,ENST00000538862.2,ENST00000229265.6	chr12	6958317:6958362:6958486:6958593:6958728:6958828,	6958487	6958593	6958492	6958492	Nonsense_Mutation	G	A	p.R216*
UCEC	TCGA-AP-A059-01	CDCA3	ENST00000535871.1	chr12	6958317:6958362:6958486:6958577:6958728:6958828,	6958487	6958577	6958492	6958492	Nonsense_Mutation	G	A	p.R216*
UCEC	TCGA-AP-A059-01	PHB2	ENST00000440277.1	chr12	7075586:7075663:7076333:7076401:7077054:7077184,	7076334	7076401	7076360	7076360	Nonsense_Mutation	G	A	p.R255*
UCEC	TCGA-AP-A059-01	PHB2	ENST00000545555.2	chr12	7075586:7075663:7076333:7076498:7077058:7077125,	7076334	7076498	7076360	7076360	Nonsense_Mutation	G	A	p.R255*
UCEC	TCGA-AP-A0LM-01	MFAP5	ENST00000540087.1,ENST00000543369.1,ENST00000544211.1,ENST00000396549.2	chr12	8802096:8802170:8803097:8803185:8807032:8807077,	8803098	8803185	8803126	8803126	Nonsense_Mutation	G	A	p.Q103*
UCEC	TCGA-AP-A056-01	A2M	ENST00000318602.7,ENST00000404455.2	chr12	9264754:9264807:9264972:9265132:9265955:9266135,	9264973	9265132	9265066	9265066	Nonsense_Mutation	C	A	p.E113*
UCEC	TCGA-BS-A0UF-01	CLEC2B	ENST00000228438.2	chr12	10005731:10006007:10006979:10007083:10010072:10010236,	10006980	10007083	10007020	10007020	Nonsense_Mutation	G	A	p.R101*
UCEC	TCGA-B5-A11E-01	LRP6	ENST00000543091.1	chr12	12356136:12356334:12397195:12397589:12419614:12419703,	12397196	12397589	12397410	12397410	Nonsense_Mutation	C	A	p.E79*
UCEC	TCGA-AP-A0LM-01	LRP6	ENST00000543091.1	chr12	12356136:12356334:12397195:12397589:12419614:12419703,	12397196	12397589	12397551	12397551	Nonsense_Mutation	G	A	p.R32*
UCEC	TCGA-B5-A0JY-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14576892	14576892	Nonsense_Mutation	C	T	p.R15*
UCEC	TCGA-B5-A0JY-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578317	14578317	Nonsense_Mutation	G	T	p.E490*
UCEC	TCGA-D1-A17Q-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578392	14578392	Nonsense_Mutation	G	T	p.E515*
UCEC	TCGA-B5-A0JY-01	EPS8	ENST00000543523.1,ENST00000543612.1,ENST00000281172.5	chr12	15814959:15815033:15818689:15818826:15819373:15819439,	15818690	15818826	15818732	15818732	Nonsense_Mutation	G	A	p.R232*
UCEC	TCGA-BS-A0UF-01	STRAP	ENST00000538352.1,ENST00000419869.2,ENST00000541731.1,ENST00000025399.6	chr12	16046980:16047077:16048292:16048430:16050815:16050952,	16048293	16048430	16048318	16048318	Nonsense_Mutation	G	T	p.E176*
UCEC	TCGA-BS-A0UV-01	DERA	ENST00000528821.1,ENST00000530274.1,ENST00000526521.1,ENST00000428559.2,ENST00000526530.1,ENST00000531803.1,ENST00000533447.1	chr12	16115746:16115881:16135241:16135370:16185475:16185485,	16135242	16135370	16135316	16135316	Nonsense_Mutation	G	T	p.E195*
UCEC	TCGA-AX-A0J1-01	RECQL	ENST00000421138.2,ENST00000444129.2	chr12	21629844:21629926:21630736:21630903:21636309:21636508,	21630737	21630903	21630874	21630874	Nonsense_Mutation	G	A	p.Q244*
UCEC	TCGA-D1-A16X-01	CMAS	ENST00000229329.2,ENST00000535610.1,ENST00000537658.1	chr12	22213765:22213860:22214214:22214386:22215214:22215347,	22214215	22214386	22214321	22214321	Nonsense_Mutation	G	T	p.E299*
UCEC	TCGA-BS-A0UF-01	ETNK1	ENST00000538218.1	chr12	22778290:22778520:22796696:22796956:22811947:22812088,	22796697	22796956	22796814	22796814	Nonsense_Mutation	G	T	p.E181*
UCEC	TCGA-BS-A0TC-01	ETNK1	ENST00000266517.4,ENST00000538218.1	chr12	22813996:22814139:22824205:22824289:22826433:22826594,	22824206	22824289	22824229	22824229	Nonsense_Mutation	G	T	p.E331*
UCEC	TCGA-D1-A17Q-01	CASC1	ENST00000395990.2,ENST00000395987.3,ENST00000354189.5,ENST00000537577.1,ENST00000557684.1,ENST00000545133.1,ENST00000554533.1,ENST00000320267.9	chr12	25276144:25276220:25297298:25297611:25299934:25300038,	25297299	25297611	25297469	25297469	Nonsense_Mutation	C	A	p.E278*
UCEC	TCGA-AP-A056-01	CASC1	ENST00000395990.2,ENST00000395987.3,ENST00000354189.5,ENST00000537577.1,ENST00000557684.1,ENST00000545133.1,ENST00000554533.1,ENST00000320267.9	chr12	25276144:25276220:25297298:25297611:25299934:25300038,	25297299	25297611	25297532	25297532	Nonsense_Mutation	G	A	p.R257*
UCEC	TCGA-B5-A0JY-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217610	26217610	Nonsense_Mutation	C	T	p.R95*
UCEC	TCGA-EY-A1GS-01	DDX11	ENST00000536265.1,ENST00000407793.2,ENST00000535158.1,ENST00000350437.4,ENST00000542838.1,ENST00000415475.2,ENST00000542129.1,ENST00000540935.1,ENST00000228264.6,ENST00000539049.1,ENST00000545668.1	chr12	31236900:31236995:31237902:31238060:31240871:31240917,31237516:31237603:31237902:31238060:31240871:31240917,	31237903	31238060	31237969	31237969	Nonsense_Mutation	G	T	p.E183*
UCEC	TCGA-D1-A15X-01	DENND5B	ENST00000389082.5,ENST00000306833.6,ENST00000536562.1	chr12	31555431:31555577:31562196:31562318:31566369:31566498,	31562197	31562318	31562305	31562305	Nonsense_Mutation	G	A	p.R899*
UCEC	TCGA-AX-A05Z-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31605149	31605149	Nonsense_Mutation	C	A	p.E452*
UCEC	TCGA-BS-A0UF-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32458630:32459056:32480394:32481489:32487449:32487601,	32480395	32481489	32481148	32481148	Nonsense_Mutation	G	T	p.E587*
UCEC	TCGA-A5-A0VP-01	FGD4	ENST00000494977.1	chr12	32777355:32777386:32777592:32777685:32777909:32777996,	32777593	32777685	32777596	32777596	Nonsense_Mutation	C	T	p.R268*
UCEC	TCGA-AP-A056-01	DNM1L	ENST00000549701.1,ENST00000414834.2,ENST00000546649.1,ENST00000553257.1	chr12	32890038:32890095:32891197:32891230:32892997:32893174,32890798:32890876:32891197:32891230:32892997:32893174,	32891198	32891230	32891219	32891219	Nonsense_Mutation	G	T	p.E566*
UCEC	TCGA-BS-A0UV-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40629427:40629516:40631770:40631905:40634284:40634419,	40631771	40631905	40631800	40631800	Nonsense_Mutation	G	T	p.E156*
UCEC	TCGA-D1-A17Q-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40634284:40634419:40637351:40637483:40643627:40643747,	40637352	40637483	40637447	40637447	Nonsense_Mutation	G	T	p.E268*
UCEC	TCGA-BS-A0UF-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40740554:40740725:40742210:40742311:40745340:40745535,	40742211	40742311	40742222	40742222	Nonsense_Mutation	G	T	p.E2098*
UCEC	TCGA-AX-A05Z-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499643	42499643	Nonsense_Mutation	G	A	p.R281*
UCEC	TCGA-AP-A059-01	IRAK4	ENST00000551736.1,ENST00000550386.1,ENST00000552309.1,ENST00000448290.2,ENST00000547521.1,ENST00000440781.2,ENST00000431837.1,ENST00000547928.1,ENST00000550615.1,ENST00000547101.1	chr12	44167767:44167832:44171432:44171547:44171995:44172105,	44171433	44171547	44171544	44171544	Nonsense_Mutation	C	A	p.C276*
UCEC	TCGA-AX-A05Z-01	NELL2	ENST00000547751.1,ENST00000452445.2,ENST00000550313.1,ENST00000333837.4,ENST00000551601.1,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	45059266:45059392:45097508:45097637:45105074:45105177,	45097509	45097637	45097554	45097554	Nonsense_Mutation	G	A	p.R475*
UCEC	TCGA-D1-A16X-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321008	46321008	Nonsense_Mutation	C	A	p.E826*
UCEC	TCGA-B5-A11E-01	HDAC7	ENST00000470668.1,ENST00000548080.1,ENST00000548938.1,ENST00000547259.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48177623:48177669:48177861:48178000:48179169:48179254,	48177862	48178000	48177971	48177971	Nonsense_Mutation	C	T	p.W993*
UCEC	TCGA-D1-A103-01	SENP1	ENST00000551330.1,ENST00000552189.1,ENST00000339976.6,ENST00000549518.1,ENST00000004980.5,ENST00000549595.1,ENST00000448372.1	chr12	48468472:48468576:48477373:48477545:48482583:48482743,	48477374	48477545	48477430	48477430	Nonsense_Mutation	G	A	p.R166*
UCEC	TCGA-AP-A056-01	SENP1	ENST00000551330.1,ENST00000552189.1,ENST00000339976.6,ENST00000549518.1,ENST00000004980.5,ENST00000549595.1,ENST00000448372.1	chr12	48468472:48468576:48477373:48477545:48482583:48482743,	48477374	48477545	48477430	48477430	Nonsense_Mutation	G	A	p.R166*
UCEC	TCGA-AP-A059-01	PFKM	ENST00000547587.1,ENST00000552989.1,ENST00000359794.5,ENST00000340802.6,ENST00000312352.7	chr12	48528725:48528821:48529073:48529166:48531503:48531598,	48529074	48529166	48529158	48529158	Nonsense_Mutation	A	T	p.R310*
UCEC	TCGA-BS-A0UV-01	KANSL2	ENST00000420613.2,ENST00000548701.1,ENST00000550347.1	chr12	49047671:49047958:49048723:49048843:49054148:49054402,	49048724	49048843	49048753	49048753	Nonsense_Mutation	C	A	p.E440*
UCEC	TCGA-D1-A16X-01	KANSL2	ENST00000420613.2,ENST00000548701.1,ENST00000550347.1	chr12	49047671:49047958:49048723:49048843:49054148:49054402,	49048724	49048843	49048753	49048753	Nonsense_Mutation	C	A	p.E440*
UCEC	TCGA-AX-A0J0-01	KANSL2	ENST00000420613.2,ENST00000548701.1,ENST00000550347.1	chr12	49047671:49047958:49048723:49048843:49054148:49054402,	49048724	49048843	49048753	49048753	Nonsense_Mutation	C	A	p.E440*
UCEC	TCGA-AP-A059-01	TROAP	ENST00000547923.1,ENST00000551245.1,ENST00000257909.3	chr12	49723177:49723237:49723639:49723774:49723927:49724257,	49723640	49723774	49723686	49723686	Nonsense_Mutation	C	A	p.S404*
UCEC	TCGA-D1-A17R-01	MCRS1	ENST00000553173.1	chr12	49959312:49959450:49959859:49959998:49960504:49960624,49959312:49959450:49959859:49959998:49961830:49961883,	49959860	49959998	49959912	49959912	Nonsense_Mutation	G	A	p.R46*
UCEC	TCGA-D1-A17R-01	MCRS1	ENST00000552206.1	chr12	49959312:49959450:49959859:49960624:49961830:49961883,	49959860	49960624	49959912	49959912	Nonsense_Mutation	G	A	p.R46*
UCEC	TCGA-D1-A17Q-01	RACGAP1	ENST00000547905.1,ENST00000454520.2,ENST00000549342.1,ENST00000551016.1,ENST00000434422.1,ENST00000312377.5,ENST00000427314.2	chr12	50386332:50386438:50387913:50388112:50388196:50388292,	50387914	50388112	50387962	50387962	Nonsense_Mutation	C	A	p.E431*
UCEC	TCGA-BS-A0UF-01	SMARCD1	ENST00000549274.1	chr12	50492496:50492598:50492729:50492924:50493269:50493348,	50492730	50492924	50492748	50492748	Nonsense_Mutation	G	T	p.E505*
UCEC	TCGA-B5-A11N-01	CERS5	ENST00000317551.6,ENST00000380189.4,ENST00000438450.2,ENST00000547787.1,ENST00000542320.1,ENST00000551005.1,ENST00000549089.1,ENST00000551697.1,ENST00000422340.2	chr12	50529740:50529852:50531510:50531603:50532349:50532400,	50531511	50531603	50531515	50531515	Nonsense_Mutation	C	A	p.E192*
UCEC	TCGA-BS-A0UF-01	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50625447:50625493:50642415:50642557:50677202:50677239,	50642416	50642557	50642471	50642471	Nonsense_Mutation	C	A	p.E22*
UCEC	TCGA-B5-A11N-01	DIP2B	ENST00000301180.5,ENST00000549620.1	chr12	51019758:51019830:51034506:51034635:51053976:51054102,	51034507	51034635	51034530	51034530	Nonsense_Mutation	G	T	p.E66*
UCEC	TCGA-B5-A0JY-01	SLC4A8	ENST00000358657.3,ENST00000535225.2,ENST00000604314.1,ENST00000453097.2,ENST00000551071.1,ENST00000394856.1,ENST00000514353.3,ENST00000319957.6	chr12	51864175:51864309:51865070:51865316:51868125:51868231,	51865071	51865316	51865243	51865243	Nonsense_Mutation	G	T	p.E611*
UCEC	TCGA-AP-A0LM-01	KRT8	ENST00000546826.1,ENST00000548998.1	chr12	53295647:53295856:53298441:53298811:53320195:53320253,53295737:53295856:53298441:53298811:53343239:53343301,	53298442	53298811	53298585	53298585	Nonsense_Mutation	C	A	p.G61*
UCEC	TCGA-B5-A11H-01	RARG	ENST00000425354.2,ENST00000548317.1,ENST00000338561.5,ENST00000327550.3,ENST00000543726.1,ENST00000550265.1,ENST00000394426.1,ENST00000543762.1	chr12	53607877:53608019:53608229:53608390:53609076:53609136,	53608230	53608390	53608385	53608385	Nonsense_Mutation	G	A	p.R161*
UCEC	TCGA-AP-A056-01	ESPL1	ENST00000549154.1,ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53685767:53685872:53686061:53686177:53686357:53686441,	53686062	53686177	53686161	53686161	Nonsense_Mutation	C	T	p.R1966*
UCEC	TCGA-D1-A16X-01	TARBP2	ENST00000550407.1,ENST00000552857.1	chr12	53898180:53898253:53898481:53898599:53899432:53899470,	53898482	53898599	53898557	53898557	Nonsense_Mutation	G	T	p.E191*
UCEC	TCGA-AP-A056-01	TARBP2	ENST00000550407.1,ENST00000552857.1	chr12	53898180:53898253:53898481:53898599:53899432:53899470,	53898482	53898599	53898557	53898557	Nonsense_Mutation	G	T	p.E191*
UCEC	TCGA-D1-A17R-01	MMP19	ENST00000548629.1,ENST00000322569.4,ENST00000552872.1	chr12	56232389:56232518:56233279:56233525:56236136:56236222,56232389:56232518:56233279:56233525:56234450:56234597,	56233280	56233525	56233467	56233467	Nonsense_Mutation	G	A	p.R78*
UCEC	TCGA-AP-A056-01	GLS2	ENST00000486896.1	chr12	56871978:56872046:56872835:56872931:56873563:56873685,	56872836	56872931	56872890	56872890	Nonsense_Mutation	G	T	p.S149*
UCEC	TCGA-AP-A056-01	GLS2	ENST00000483347.1,ENST00000494345.1,ENST00000486433.1,ENST00000311966.4	chr12	56871978:56872046:56872835:56872965:56873563:56873685,	56872836	56872965	56872890	56872890	Nonsense_Mutation	G	T	p.S149*
UCEC	TCGA-AP-A056-01	HSD17B6	ENST00000555805.1,ENST00000554643.1,ENST00000554150.1,ENST00000555159.1,ENST00000322165.1	chr12	57175873:57176016:57178636:57178800:57180908:57181129,	57178637	57178800	57178728	57178728	Nonsense_Mutation	C	T	p.R222*
UCEC	TCGA-BS-A0UV-01	SHMT2	ENST00000553837.1,ENST00000553474.1,ENST00000556825.1,ENST00000557529.1,ENST00000555634.1,ENST00000557348.1,ENST00000557433.1,ENST00000328923.3,ENST00000555116.1,ENST00000555774.1,ENST00000555563.1,ENST00000414700.3,ENST00000393827.4,ENST00000557487.1,ENST00000449049.3	chr12	57626265:57626358:57626486:57626626:57626962:57627022,	57626487	57626626	57626616	57626616	Nonsense_Mutation	C	T	p.R283*
UCEC	TCGA-BS-A0UF-01	ARHGAP9	ENST00000430041.2,ENST00000550440.1,ENST00000356411.2,ENST00000393791.3,ENST00000546200.1,ENST00000550130.1,ENST00000552953.1,ENST00000393797.2	chr12	57866458:57866471:57867385:57867491:57867824:57867956,	57867386	57867491	57867453	57867453	Nonsense_Mutation	C	A	p.E653*
UCEC	TCGA-BS-A0UF-01	ARHGAP9	ENST00000550288.1	chr12	57866458:57866471:57867385:57867474:57867824:57867956,	57867386	57867474	57867453	57867453	Nonsense_Mutation	C	A	p.E653*
UCEC	TCGA-AP-A056-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920420	57920420	Nonsense_Mutation	G	T	p.G498*
UCEC	TCGA-AP-A059-01	MARCH9	ENST00000266643.5	chr12	58150711:58150867:58151890:58152083:58152345:58153199,	58151891	58152083	58152016	58152016	Nonsense_Mutation	G	A	p.W213*
UCEC	TCGA-BS-A0UA-01	USP15	ENST00000280377.5,ENST00000393654.3,ENST00000353364.3	chr12	62777620:62777779:62777858:62778083:62783210:62783294,	62777859	62778083	62777895	62777895	Nonsense_Mutation	C	T	p.R400*
UCEC	TCGA-D1-A16X-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62895352:62895478:62902065:62902260:62918294:62918419,	62902066	62902260	62902072	62902072	Nonsense_Mutation	G	T	p.E266*
UCEC	TCGA-BS-A0TC-01	MON2	ENST00000393629.2,ENST00000551307.1,ENST00000393630.3,ENST00000552738.1,ENST00000547095.1,ENST00000393632.2	chr12	62979073:62979281:62981853:62981936:62986365:62986638,	62981854	62981936	62981910	62981910	Nonsense_Mutation	C	A	p.S1655*
UCEC	TCGA-AP-A059-01	DPY19L2	ENST00000324472.4,ENST00000413230.2	chr12	63964537:63964637:63974441:63974616:63976185:63976305,	63974442	63974616	63974505	63974505	Nonsense_Mutation	C	A	p.G613*
UCEC	TCGA-B5-A0JY-01	C12orf56	ENST00000543259.1,ENST00000333722.5	chr12	64724739:64724812:64746673:64746836:64784093:64784306,	64746674	64746836	64746746	64746746	Nonsense_Mutation	C	A	p.E115*
UCEC	TCGA-AP-A051-01	MSRB3	ENST00000541897.1,ENST00000355192.3,ENST00000535143.1,ENST00000535239.1,ENST00000535664.1,ENST00000308259.5	chr12	65762777:65762806:65847507:65847605:65856934:65856972,	65847508	65847605	65847599	65847599	Nonsense_Mutation	C	A	p.C135*
UCEC	TCGA-AX-A0J0-01	GRIP1	ENST00000545666.1,ENST00000540433.1,ENST00000542309.1,ENST00000359742.4,ENST00000538211.1,ENST00000539540.1,ENST00000540854.1,ENST00000536215.1,ENST00000398016.3,ENST00000286445.7	chr12	66911728:66911756:66923610:66923694:66932857:66932888,	66923611	66923694	66923614	66923614	Nonsense_Mutation	G	A	p.R167*
UCEC	TCGA-AX-A0J0-01	CAND1	ENST00000535146.1,ENST00000540319.1,ENST00000545606.1	chr12	67688812:67688936:67691186:67691443:67691527:67691628,	67691187	67691443	67691341	67691341	Nonsense_Mutation	G	T	p.E216*
UCEC	TCGA-AP-A051-01	RAP1B	ENST00000540209.1	chr12	69042485:69042561:69044179:69044248:69047891:69047962,	69044180	69044248	69044198	69044198	Nonsense_Mutation	G	T	p.G26*
UCEC	TCGA-AP-A056-01	NUP107	ENST00000535718.1,ENST00000229179.4,ENST00000539906.1,ENST00000378905.2	chr12	69096515:69096564:69103017:69103089:69103784:69103873,	69103018	69103089	69103078	69103078	Nonsense_Mutation	C	T	p.R264*
UCEC	TCGA-AP-A051-01	CCT2	ENST00000299300.6,ENST00000544368.2,ENST00000550010.1,ENST00000543146.2,ENST00000548787.1	chr12	69983358:69983467:69985838:69985939:69986755:69986883,	69985839	69985939	69985880	69985880	Nonsense_Mutation	C	T	p.R231*
UCEC	TCGA-BS-A0UF-01	CCT2	ENST00000299300.6,ENST00000544368.2,ENST00000543146.2	chr12	69990935:69991055:69991417:69991546:69991747:69991851,	69991418	69991546	69991468	69991468	Nonsense_Mutation	G	T	p.E385*
UCEC	TCGA-BS-A0UV-01	TBC1D15	ENST00000319106.8	chr12	72233557:72233591:72255184:72255276:72265849:72265948,	72255185	72255276	72255232	72255232	Nonsense_Mutation	G	T	p.G4*
UCEC	TCGA-AX-A0J0-01	TBC1D15	ENST00000472611.2	chr12	72274248:72274387:72278590:72278801:72287001:72287086,72266708:72266783:72278590:72278801:72287001:72287086,	72278591	72278801	72278606	72278606	Nonsense_Mutation	G	T	p.E74*
UCEC	TCGA-BS-A0TC-01	TBC1D15	ENST00000472611.2	chr12	72274248:72274387:72278590:72278801:72287001:72287086,72266708:72266783:72278590:72278801:72287001:72287086,	72278591	72278801	72278770	72278770	Nonsense_Mutation	G	T	p.E175*
UCEC	TCGA-AP-A056-01	CAPS2	ENST00000328705.3,ENST00000409799.1,ENST00000336815.6,ENST00000409004.1,ENST00000442339.2,ENST00000393284.3,ENST00000409445.3	chr12	75678740:75678860:75683400:75683555:75685523:75685600,	75683401	75683555	75683544	75683544	Nonsense_Mutation	C	A	p.E437*
UCEC	TCGA-D1-A16Y-01	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78592384:78592456:78593114:78593311:78594252:78594342,	78593115	78593311	78593140	78593140	Nonsense_Mutation	G	T	p.E2160*
UCEC	TCGA-B5-A11E-01	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000551162.1,ENST00000541270.1,ENST00000228327.6,ENST00000397909.2	chr12	78593114:78593311:78594252:78594371:78598714:78598918,	78594253	78594371	78594320	78594320	Nonsense_Mutation	G	A	p.W2239*
UCEC	TCGA-B5-A11N-01	PAWR	ENST00000328827.4,ENST00000548075.1,ENST00000547699.1,ENST00000550603.1	chr12	79986390:79986473:79988108:79988213:79990290:79990314,	79988109	79988213	79988129	79988129	Nonsense_Mutation	C	A	p.E306*
UCEC	TCGA-AX-A0J0-01	OTOGL	ENST00000547103.1,ENST00000458043.2	chr12	80672807:80672946:80690606:80690741:80696413:80696563,	80690607	80690741	80690709	80690709	Nonsense_Mutation	G	T	p.E916*
UCEC	TCGA-D1-A167-01	PTPRQ	ENST00000266688.5	chr12	80940334:80940476:80943243:80943513:80981907:80982231,	80943244	80943513	80943267	80943267	Nonsense_Mutation	C	T	p.Q1347*
UCEC	TCGA-D1-A17Q-01	PTPRQ	ENST00000266688.5	chr12	81064122:81064271:81066947:81067083:81072380:81072504,	81066948	81067083	81067061	81067061	Nonsense_Mutation	G	T	p.E2089*
UCEC	TCGA-D1-A17Q-01	LIN7A	ENST00000552864.1,ENST00000261203.3	chr12	81191353:81191505:81205243:81205462:81239508:81239718,	81205244	81205462	81205450	81205450	Nonsense_Mutation	C	A	p.E166*
UCEC	TCGA-D1-A103-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449556	85449556	Nonsense_Mutation	C	T	p.R329*
UCEC	TCGA-AP-A0LM-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449946	85449946	Nonsense_Mutation	G	T	p.E459*
UCEC	TCGA-AX-A05Z-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450243	85450243	Nonsense_Mutation	G	T	p.G558*
UCEC	TCGA-BS-A0UV-01	NTS	ENST00000256010.6	chr12	86270423:86270479:86272122:86272347:86276000:86276557,	86272123	86272347	86272216	86272216	Nonsense_Mutation	G	T	p.E77*
UCEC	TCGA-D1-A17Q-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88465070:88465226:88465557:88465703:88470998:88471121,	88465558	88465703	88465637	88465637	Nonsense_Mutation	G	A	p.R1926*
UCEC	TCGA-AP-A056-01	CEP290	ENST00000397838.3,ENST00000309041.7,ENST00000552810.1,ENST00000604024.1	chr12	88505470:88505635:88508196:88508339:88508874:88508959,	88508197	88508339	88508238	88508238	Nonsense_Mutation	C	A	p.E671*
UCEC	TCGA-BS-A0UF-01	DCN	ENST00000549513.1,ENST00000052754.5,ENST00000393155.1,ENST00000550563.1,ENST00000552145.1,ENST00000552962.1,ENST00000547937.1	chr12	91540012:91540029:91558381:91558494:91572118:91572178,91552252:91552286:91558381:91558494:91572118:91572329,	91558382	91558494	91558441	91558441	Nonsense_Mutation	G	A	p.Q89*
UCEC	TCGA-BS-A0UF-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93202792:93202932:93205054:93205210:93206755:93206869,	93205055	93205210	93205117	93205117	Nonsense_Mutation	C	A	p.E713*
UCEC	TCGA-A5-A0GP-01	PLXNC1	ENST00000258526.4	chr12	94580148:94580249:94603365:94603480:94613791:94613939,	94603366	94603480	94603463	94603463	Nonsense_Mutation	C	T	p.R513*
UCEC	TCGA-AX-A05Z-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95918455:95918564:95922582:95922778:95926604:95928102,	95922583	95922778	95922631	95922631	Nonsense_Mutation	C	A	p.E526*
UCEC	TCGA-B5-A0JY-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95918455:95918564:95922582:95922778:95926604:95928102,	95922583	95922778	95922739	95922739	Nonsense_Mutation	C	A	p.E490*
UCEC	TCGA-BS-A0UF-01	AMDHD1	ENST00000548310.1	chr12	96337297:96337313:96346494:96346601:96350462:96350474,	96346495	96346601	96346553	96346553	Nonsense_Mutation	G	T	p.E66*
UCEC	TCGA-AX-A05Z-01	AMDHD1	ENST00000548310.1	chr12	96348688:96348753:96350462:96350740:96354175:96354391,96346494:96346601:96350462:96350740:96354175:96354391,	96350463	96350740	96350484	96350484	Nonsense_Mutation	G	T	p.E111*
UCEC	TCGA-B5-A0JY-01	SLC25A3	ENST00000548847.1,ENST00000401722.3,ENST00000552981.1,ENST00000188376.5,ENST00000549338.1,ENST00000546766.1	chr12	98989504:98989626:98991633:98991813:98992299:98992345,	98991634	98991813	98991775	98991775	Nonsense_Mutation	G	T	p.E142*
UCEC	TCGA-AP-A051-01	UHRF1BP1L	ENST00000551973.1,ENST00000279907.7,ENST00000545232.2,ENST00000356828.3	chr12	100476793:100476912:100478253:100478436:100480052:100480136,	100478254	100478436	100478260	100478260	Nonsense_Mutation	G	A	p.Q428*
UCEC	TCGA-D1-A17Q-01	ACTR6	ENST00000553038.1	chr12	100599453:100599535:100601440:100601564:100603850:100603913,100599453:100599522:100601440:100601564:100603850:100603913,100599453:100599522:100601440:100601564:100604072:100604098,	100601441	100601564	100601504	100601504	Nonsense_Mutation	G	T	p.E107*
UCEC	TCGA-AP-A056-01	SCYL2	ENST00000360820.2,ENST00000549687.1	chr12	100676909:100676925:100685280:100685438:100691808:100691953,	100685281	100685438	100685392	100685392	Nonsense_Mutation	C	T	p.R97*
UCEC	TCGA-AX-A0J0-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904867	100904867	Nonsense_Mutation	G	T	p.G131*
UCEC	TCGA-AP-A056-01	ANO4	ENST00000392977.3,ENST00000549234.1,ENST00000392979.3,ENST00000299222.9	chr12	101430872:101430928:101433732:101433854:101436111:101436159,	101433733	101433854	101433760	101433760	Nonsense_Mutation	C	T	p.R274*
UCEC	TCGA-BS-A0UV-01	UTP20	ENST00000261637.4	chr12	101773148:101773336:101774917:101774989:101776818:101777091,	101774918	101774989	101774984	101774984	Nonsense_Mutation	G	T	p.E2551*
UCEC	TCGA-AP-A056-01	NUP37	ENST00000543021.1,ENST00000251074.1,ENST00000551744.2,ENST00000551200.1,ENST00000552283.1	chr12	102494809:102494882:102505885:102506010:102512140:102512361,	102505886	102506010	102505968	102505968	Nonsense_Mutation	G	A	p.R67*
UCEC	TCGA-B5-A0JY-01	HSP90B1	ENST00000299767.5,ENST00000548462.1,ENST00000540297.2	chr12	104326058:104326196:104326603:104326720:104327733:104327768,	104326604	104326720	104326616	104326616	Nonsense_Mutation	G	T	p.E103*
UCEC	TCGA-D1-A17Q-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000527688.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104721292:104721449:104725311:104725419:104728014:104728110,	104725312	104725419	104725408	104725408	Nonsense_Mutation	G	T	p.E551*
UCEC	TCGA-AX-A0J0-01	CRY1	ENST00000008527.5,ENST00000552790.1	chr12	107395541:107395726:107398883:107399026:107415861:107415970,	107398884	107399026	107398927	107398927	Nonsense_Mutation	C	A	p.E123*
UCEC	TCGA-AP-A051-01	PRDM4	ENST00000228437.5,ENST00000550376.1	chr12	108133159:108133328:108134722:108135037:108135997:108136125,	108134723	108135037	108134871	108134871	Nonsense_Mutation	G	T	p.C592*
UCEC	TCGA-BS-A0UV-01	SSH1	ENST00000551165.1,ENST00000326495.5	chr12	109217033:109217137:109246413:109246454:109251203:109251289,	109246414	109246454	109246430	109246430	Nonsense_Mutation	G	A	p.R32*
UCEC	TCGA-AP-A056-01	GLTP	ENST00000318348.4	chr12	110293423:110293574:110295330:110295464:110296487:110296546,	110295331	110295464	110295392	110295392	Nonsense_Mutation	C	A	p.E79*
UCEC	TCGA-AP-A056-01	GLTP	ENST00000544393.1	chr12	110293423:110293574:110295387:110295464:110296487:110296546,	110295388	110295464	110295392	110295392	Nonsense_Mutation	C	A	p.E79*
UCEC	TCGA-B5-A11E-01	ANAPC7	ENST00000455511.3,ENST00000548234.1,ENST00000471602.2,ENST00000450008.2	chr12	110815395:110815422:110819556:110819753:110820647:110820765,	110819557	110819753	110819628	110819628	Nonsense_Mutation	C	A	p.E381*
UCEC	TCGA-B5-A0JY-01	ACAD10	ENST00000455480.2	chr12	112147329:112147488:112150301:112150461:112153624:112153766,112148076:112148169:112150301:112150461:112153624:112153766,	112150302	112150461	112150335	112150335	Nonsense_Mutation	G	T	p.E273*
UCEC	TCGA-AP-A059-01	ACAD10	ENST00000508303.1,ENST00000455480.2,ENST00000549590.1,ENST00000552177.1,ENST00000413681.3,ENST00000313698.4,ENST00000392636.2	chr12	112171726:112171872:112174634:112174808:112182446:112182752,	112174635	112174808	112174699	112174699	Nonsense_Mutation	C	A	p.Y566*
UCEC	TCGA-AX-A05Z-01	NAA25	ENST00000552527.1,ENST00000549711.1,ENST00000261745.4	chr12	112467353:112467457:112471036:112471183:112477032:112477143,	112471037	112471183	112471069	112471069	Nonsense_Mutation	C	A	p.E922*
UCEC	TCGA-B5-A11N-01	NAA25	ENST00000551858.1,ENST00000552527.1,ENST00000549711.1,ENST00000261745.4	chr12	112498073:112498163:112498984:112499192:112506683:112506796,	112498985	112499192	112499021	112499021	Nonsense_Mutation	C	A	p.E441*
UCEC	TCGA-B5-A0JY-01	RPH3A	ENST00000551052.1	chr12	113274295:113274307:113285500:113285647:113303218:113303348,113266123:113266194:113285500:113285647:113303218:113303237,	113285501	113285647	113285583	113285583	Nonsense_Mutation	G	T	p.E56*
UCEC	TCGA-B5-A11G-01	MED13L	ENST00000281928.3	chr12	116401211:116401324:116403886:116404048:116406744:116406902,	116403887	116404048	116403923	116403923	Nonsense_Mutation	A	T	p.C2117*
UCEC	TCGA-B5-A0JY-01	CIT	ENST00000537607.1,ENST00000392520.2,ENST00000392521.2,ENST00000261833.7,ENST00000545913.1	chr12	120148344:120148425:120149982:120150152:120150395:120150500,	120149983	120150152	120150036	120150036	Nonsense_Mutation	C	A	p.E1559*
UCEC	TCGA-BS-A0UF-01	CIT	ENST00000537607.1,ENST00000392520.2,ENST00000392521.2,ENST00000261833.7,ENST00000545913.1	chr12	120214161:120214212:120214475:120214646:120220321:120220441,	120214476	120214646	120214625	120214625	Nonsense_Mutation	C	A	p.E563*
UCEC	TCGA-B5-A11E-01	POP5	ENST00000535245.1	chr12	121017171:121017215:121017316:121017726:121018917:121019054,	121017317	121017726	121017688	121017688	Nonsense_Mutation	G	A	p.R68*
UCEC	TCGA-B5-A11E-01	POP5	ENST00000543355.1	chr12	121017316:121017400:121017576:121017726:121018917:121019054,121017316:121017400:121017576:121017726:121018798:121019060,	121017577	121017726	121017688	121017688	Nonsense_Mutation	G	A	p.R68*
UCEC	TCGA-D1-A16X-01	POP5	ENST00000535245.1	chr12	121017171:121017215:121017316:121017726:121018917:121019054,	121017317	121017726	121017724	121017724	Nonsense_Mutation	G	A	p.R56*
UCEC	TCGA-D1-A16X-01	POP5	ENST00000543355.1	chr12	121017316:121017400:121017576:121017726:121018917:121019054,121017316:121017400:121017576:121017726:121018798:121019060,	121017577	121017726	121017724	121017724	Nonsense_Mutation	G	A	p.R56*
UCEC	TCGA-AP-A0LM-01	ANAPC5	ENST00000441917.2,ENST00000544442.1,ENST00000534976.1,ENST00000344395.4,ENST00000541887.1,ENST00000261819.3,ENST00000541652.1,ENST00000536366.1	chr12	121775093:121775195:121779805:121779872:121783641:121783834,	121779806	121779872	121779826	121779826	Nonsense_Mutation	C	A	p.E213*
UCEC	TCGA-D1-A15X-01	MORN3	ENST00000542364.1,ENST00000392462.2	chr12	122092179:122092339:122097096:122097254:122107244:122107418,	122097097	122097254	122097189	122097189	Nonsense_Mutation	G	A	p.R71*
UCEC	TCGA-BS-A0UV-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122794308:122794429:122801295:122801402:122803778:122803895,	122801296	122801402	122801387	122801387	Nonsense_Mutation	C	A	p.E1117*
UCEC	TCGA-D1-A17Q-01	CLIP1	ENST00000537178.1	chr12	122821178:122821295:122825299:122826244:122837272:122837333,	122825300	122826244	122825788	122825788	Nonsense_Mutation	C	A	p.E644*
UCEC	TCGA-D1-A17Q-01	CLIP1	ENST00000361654.4	chr12	122821178:122821295:122825527:122826244:122837272:122837333,	122825528	122826244	122825788	122825788	Nonsense_Mutation	C	A	p.E644*
UCEC	TCGA-B5-A11N-01	CLIP1	ENST00000537178.1	chr12	122821178:122821295:122825299:122826244:122837272:122837333,	122825300	122826244	122826046	122826046	Nonsense_Mutation	C	A	p.E558*
UCEC	TCGA-B5-A11N-01	CLIP1	ENST00000361654.4	chr12	122821178:122821295:122825527:122826244:122837272:122837333,	122825528	122826244	122826046	122826046	Nonsense_Mutation	C	A	p.E558*
UCEC	TCGA-D1-A17Q-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000606321.1,ENST00000302349.5	chr12	123648496:123648637:123649848:123650024:123651201:123651336,	123649849	123650024	123649915	123649915	Nonsense_Mutation	C	A	p.E749*
UCEC	TCGA-D1-A103-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123800094:123800207:123801767:123801903:123804446:123804578,	123801768	123801903	123801828	123801828	Nonsense_Mutation	G	A	p.R958*
UCEC	TCGA-AX-A0J0-01	TMED2	ENST00000543425.1	chr12	124069144:124069363:124071293:124071486:124074888:124074993,	124071294	124071486	124071336	124071336	Nonsense_Mutation	G	T	p.E75*
UCEC	TCGA-D1-A16J-01	GLT1D1	ENST00000413816.2,ENST00000542193.1,ENST00000537468.1,ENST00000442111.2,ENST00000281703.6	chr12	129360458:129360607:129373183:129373289:129383780:129383832,	129373184	129373289	129373189	129373189	Nonsense_Mutation	C	T	p.R75*
UCEC	TCGA-AX-A0J0-01	PIWIL1	ENST00000245255.3	chr12	130840097:130840212:130841462:130841650:130842025:130842098,	130841463	130841650	130841499	130841499	Nonsense_Mutation	G	T	p.E481*
UCEC	TCGA-AP-A051-01	PUS1	ENST00000440818.2,ENST00000376649.3,ENST00000443358.2,ENST00000542167.2	chr12	132423717:132423820:132425836:132426528:132428083:132428402,	132425837	132426528	132426055	132426055	Nonsense_Mutation	C	T	p.Q255*
UCEC	TCGA-BS-A0UV-01	ANKLE2	ENST00000538766.1,ENST00000539605.1,ENST00000357997.5	chr12	133304617:133304749:133306264:133306856:133310970:133311046,	133306265	133306856	133306773	133306773	Nonsense_Mutation	G	A	p.R659*
UCEC	TCGA-D1-A103-01	PSPC1	ENST00000492741.1,ENST00000471658.1	chr13	20251863:20251963:20304378:20304484:20315704:20315789,	20304379	20304484	20304417	20304417	Nonsense_Mutation	G	A	p.R374*
UCEC	TCGA-AX-A05Z-01	PSPC1	ENST00000492741.1,ENST00000338910.4,ENST00000471658.1	chr13	20304378:20304484:20315704:20315789:20325410:20325607,	20315705	20315789	20315772	20315772	Nonsense_Mutation	C	A	p.E329*
UCEC	TCGA-AP-A059-01	ZMYM5	ENST00000382905.4,ENST00000337963.4,ENST00000502168.2,ENST00000467542.1	chr13	20411795:20411961:20412839:20413125:20425494:20425588,	20412840	20413125	20412928	20412928	Nonsense_Mutation	C	A	p.G262*
UCEC	TCGA-D1-A17Q-01	ZMYM2	ENST00000382871.2,ENST00000382870.3,ENST00000382874.2,ENST00000382869.3,ENST00000494061.2	chr13	20641378:20641530:20656155:20656270:20656920:20657172,	20656156	20656270	20656174	20656174	Nonsense_Mutation	C	T	p.R1158*
UCEC	TCGA-AP-A051-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1	chr13	21230503:21230569:21237636:21237743:21245111:21245178,	21237637	21237743	21237729	21237729	Nonsense_Mutation	G	T	p.E730*
UCEC	TCGA-AX-A0J0-01	SGCG	ENST00000537476.1,ENST00000218867.3,ENST00000545013.1	chr13	23824768:23824856:23853497:23853617:23869553:23869626,	23853498	23853617	23853608	23853608	Nonsense_Mutation	C	T	p.R166*
UCEC	TCGA-AX-A05Z-01	SACS	ENST00000382292.3,ENST00000402364.1,ENST00000455470.1,ENST00000382298.3	chr13	23928657:23930146:23932473:23932620:23939304:23939416,	23932474	23932620	23932558	23932558	Nonsense_Mutation	C	A	p.E174*
UCEC	TCGA-B5-A0JY-01	RNF17	ENST00000418120.1,ENST00000381921.1,ENST00000255324.5,ENST00000339524.3	chr13	25418016:25418109:25418789:25418940:25419098:25419217,	25418790	25418940	25418797	25418797	Nonsense_Mutation	G	T	p.E947*
UCEC	TCGA-BS-A0UV-01	CENPJ	ENST00000381884.4,ENST00000545981.1,ENST00000418179.1	chr13	25466780:25467005:25473556:25473722:25478063:25478132,	25473557	25473722	25473676	25473676	Nonsense_Mutation	G	A	p.R958*
UCEC	TCGA-D1-A103-01	CENPJ	ENST00000381884.4,ENST00000545981.1,ENST00000418179.1	chr13	25466780:25467005:25473556:25473722:25478063:25478132,	25473557	25473722	25473685	25473685	Nonsense_Mutation	C	A	p.E955*
UCEC	TCGA-D1-A103-01	CENPJ	ENST00000381884.4,ENST00000545981.1	chr13	25482155:25482264:25483927:25484224:25486083:25486207,	25483928	25484224	25483970	25483970	Nonsense_Mutation	C	A	p.E275*
UCEC	TCGA-AX-A05Z-01	MTMR6	ENST00000381801.5,ENST00000540661.1	chr13	25840266:25840424:25841916:25842079:25848208:25848325,	25841917	25842079	25841968	25841968	Nonsense_Mutation	C	A	p.E85*
UCEC	TCGA-BS-A0TC-01	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28610071:28610180:28611321:28611425:28622411:28622580,	28611322	28611425	28611388	28611388	Nonsense_Mutation	C	A	p.E415*
UCEC	TCGA-BS-A0UF-01	HSPH1	ENST00000445273.2,ENST00000320027.5,ENST00000429785.2,ENST00000602786.1,ENST00000380406.5	chr13	31715258:31715396:31717928:31718060:31719699:31719905,	31717929	31718060	31717955	31717955	Nonsense_Mutation	C	A	p.E564*
UCEC	TCGA-B5-A11E-01	HSPH1	ENST00000445273.2,ENST00000320027.5,ENST00000380405.4	chr13	31725745:31725879:31726988:31727088:31728769:31728892,	31726989	31727088	31727058	31727058	Nonsense_Mutation	G	A	p.R154*
UCEC	TCGA-B5-A0JY-01	RXFP2	ENST00000380314.1,ENST00000298386.2	chr13	32363258:32363330:32365942:32366172:32366814:32367225,	32365943	32366172	32365959	32365959	Nonsense_Mutation	C	T	p.R388*
UCEC	TCGA-D1-A17Q-01	N4BP2L1	ENST00000380139.4	chr13	32977286:32977337:32978339:32978408:32981386:32981475,	32978340	32978408	32978345	32978345	Nonsense_Mutation	C	A	p.E154*
UCEC	TCGA-B5-A0JY-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33315217:33315286:33316728:33316865:33320114:33320238,	33316729	33316865	33316753	33316753	Nonsense_Mutation	C	T	p.R834*
UCEC	TCGA-D1-A16X-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33315217:33315286:33316728:33316865:33320114:33320238,	33316729	33316865	33316753	33316753	Nonsense_Mutation	C	T	p.R834*
UCEC	TCGA-D1-A16Y-01	NBEA	ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3	chr13	35691550:35691630:35692364:35692427:35692513:35692611,	35692365	35692427	35692368	35692368	Nonsense_Mutation	C	T	p.R696*
UCEC	TCGA-BS-A0TC-01	CCNA1	ENST00000255465.4,ENST00000418263.1,ENST00000440264.1,ENST00000449823.1	chr13	37015254:37015368:37016307:37016441:37016750:37017019,	37016308	37016441	37016339	37016339	Nonsense_Mutation	C	A	p.S415*
UCEC	TCGA-AP-A056-01	POSTN	ENST00000379742.4	chr13	38143880:38143958:38144716:38144806:38145505:38145565,38143880:38143958:38144716:38144806:38151889:38151934,	38144717	38144806	38144729	38144729	Nonsense_Mutation	G	A	p.R753*
UCEC	TCGA-B5-A11N-01	POSTN	ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4,ENST00000541179.1	chr13	38160275:38160417:38160918:38161065:38161958:38162123,	38160919	38161065	38161044	38161044	Nonsense_Mutation	G	A	p.R210*
UCEC	TCGA-AP-A0LM-01	NHLRC3	ENST00000470258.1,ENST00000379600.3	chr13	39613700:39613848:39616241:39616442:39618226:39618318,	39616242	39616442	39616409	39616409	Nonsense_Mutation	G	T	p.G185*
UCEC	TCGA-D1-A17Q-01	COG6	ENST00000455146.3,ENST00000356576.4,ENST00000416691.1	chr13	40251604:40251716:40253674:40253757:40254111:40254182,	40253675	40253757	40253683	40253683	Nonsense_Mutation	C	A	p.S205*
UCEC	TCGA-D1-A17Q-01	MTRF1	ENST00000430347.2,ENST00000379480.4,ENST00000379477.1	chr13	41797391:41797490:41800567:41800704:41808025:41808143,	41800568	41800704	41800681	41800681	Nonsense_Mutation	C	A	p.E338*
UCEC	TCGA-B5-A0JY-01	NAA16	ENST00000379406.3,ENST00000463114.1,ENST00000497143.1	chr13	41941574:41941788:41943225:41943419:41946338:41946447,	41943226	41943419	41943243	41943243	Nonsense_Mutation	G	T	p.E591*
UCEC	TCGA-AX-A0J0-01	NAA16	ENST00000379406.3,ENST00000497143.1	chr13	41946950:41946966:41947772:41947916:41948877:41948975,	41947773	41947916	41947823	41947823	Nonsense_Mutation	G	T	p.E736*
UCEC	TCGA-AX-A0J0-01	EPSTI1	ENST00000313624.7	chr13	43474445:43474519:43491676:43491760:43500471:43500565,	43491677	43491760	43491721	43491721	Nonsense_Mutation	C	A	p.E244*
UCEC	TCGA-BS-A0UV-01	EPSTI1	ENST00000540470.1,ENST00000476830.2,ENST00000398762.3,ENST00000313640.7,ENST00000537828.1,ENST00000535677.1,ENST00000313624.7	chr13	43500526:43500565:43528083:43528157:43537390:43537474,	43528084	43528157	43528124	43528124	Nonsense_Mutation	C	A	p.E175*
UCEC	TCGA-BS-A0UF-01	CCDC122	ENST00000444614.3	chr13	44410487:44411565:44432916:44433033:44433807:44434206,	44432917	44433033	44432991	44432991	Nonsense_Mutation	C	A	p.E200*
UCEC	TCGA-AP-A059-01	ZC3H13	ENST00000282007.3,ENST00000242848.4	chr13	46594583:46594692:46616298:46616410:46619089:46619199,	46616299	46616410	46616331	46616331	Nonsense_Mutation	G	A	p.R103*
UCEC	TCGA-A5-A0VP-01	CPB2	ENST00000439329.3,ENST00000181383.4	chr13	46652934:46653036:46656575:46656684:46658353:46658478,	46656576	46656684	46656596	46656596	Nonsense_Mutation	G	A	p.Q122*
UCEC	TCGA-AP-A056-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47224335:47224480:47243164:47243291:47255875:47255981,	47243165	47243291	47243166	47243166	Nonsense_Mutation	C	T	p.R152*
UCEC	TCGA-AP-A056-01	ITM2B	ENST00000378565.5	chr13	48832261:48832372:48832932:48833083:48835274:48835524,	48832933	48833083	48833071	48833071	Nonsense_Mutation	G	T	p.E235*
UCEC	TCGA-BS-A0UV-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951075	48951075	Nonsense_Mutation	G	T	p.E413*
UCEC	TCGA-AP-A0LM-01	FNDC3A	ENST00000378383.1,ENST00000484074.1,ENST00000492622.2,ENST00000541916.1	chr13	49580287:49580425:49649424:49649500:49688790:49688867,	49649425	49649500	49649473	49649473	Nonsense_Mutation	G	T	p.E50*
UCEC	TCGA-D1-A17Q-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50041999:50042096:50050611:50051175:50054354:50054471,	50050612	50051175	50050985	50050985	Nonsense_Mutation	G	T	p.E239*
UCEC	TCGA-BS-A0UV-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50041999:50042096:50050611:50051175:50054354:50054471,	50050612	50051175	50050985	50050985	Nonsense_Mutation	G	T	p.E239*
UCEC	TCGA-AP-A0LM-01	PHF11	ENST00000378319.3,ENST00000496623.1	chr13	50071248:50071353:50080770:50080892:50087194:50087302,50070535:50070618:50080770:50080892:50087194:50087302,50070151:50070231:50080770:50080892:50087194:50087302,	50080771	50080892	50080820	50080820	Nonsense_Mutation	C	A	p.C48*
UCEC	TCGA-B5-A11H-01	PHF11	ENST00000378319.3,ENST00000496612.1,ENST00000426879.1,ENST00000488958.1,ENST00000467763.1,ENST00000482487.1,ENST00000465045.1,ENST00000357596.3,ENST00000442195.1,ENST00000476953.2	chr13	50087194:50087302:50092153:50092287:50095029:50095076,	50092154	50092287	50092190	50092190	Nonsense_Mutation	G	T	p.G121*
UCEC	TCGA-AX-A0J0-01	PHF11	ENST00000378319.3,ENST00000496612.1,ENST00000426879.1,ENST00000488958.1,ENST00000467763.1,ENST00000482487.1,ENST00000465045.1,ENST00000357596.3,ENST00000442195.1,ENST00000476953.2	chr13	50087194:50087302:50092153:50092287:50095029:50095076,	50092154	50092287	50092274	50092274	Nonsense_Mutation	C	T	p.R149*
UCEC	TCGA-D1-A103-01	PHF11	ENST00000378319.3,ENST00000496612.1,ENST00000426879.1,ENST00000488958.1,ENST00000467763.1,ENST00000482487.1,ENST00000465045.1,ENST00000357596.3,ENST00000442195.1,ENST00000476953.2	chr13	50087194:50087302:50092153:50092287:50095029:50095076,	50092154	50092287	50092274	50092274	Nonsense_Mutation	C	T	p.R149*
UCEC	TCGA-BS-A0UF-01	SPRYD7	ENST00000378195.2,ENST00000361840.3	chr13	50486841:50489296:50495613:50495716:50502054:50502221,	50495614	50495716	50495691	50495691	Nonsense_Mutation	A	C	p.L139*
UCEC	TCGA-D1-A17Q-01	INTS6	ENST00000469430.1,ENST00000497989.1	chr13	51963454:51963580:51969435:51969619:52004429:52004519,51963454:51963580:51969435:51969619:51995247:51995470,	51969436	51969619	51969505	51969505	Nonsense_Mutation	C	A	p.E182*
UCEC	TCGA-BS-A0UV-01	INTS6	ENST00000425000.1,ENST00000491723.1,ENST00000485178.1,ENST00000469430.1,ENST00000311234.4,ENST00000420668.2,ENST00000463928.1,ENST00000461515.1,ENST00000486195.2,ENST00000483288.1,ENST00000398119.2	chr13	52004440:52004519:52025160:52025310:52026113:52026191,	52025161	52025310	52025298	52025298	Nonsense_Mutation	C	A	p.E68*
UCEC	TCGA-D1-A17Q-01	DIAPH3	ENST00000400319.1,ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4,ENST00000400320.1,ENST00000465066.1	chr13	60348861:60348957:60384921:60385057:60407240:60407403,	60384922	60385057	60384934	60384934	Nonsense_Mutation	C	A	p.E1051*
UCEC	TCGA-AX-A060-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102848	61102848	Nonsense_Mutation	A	T	p.K404*
UCEC	TCGA-BS-A0UV-01	BORA	ENST00000464754.1	chr13	73303063:73303231:73305418:73305525:73309097:73309143,73303063:73303231:73305418:73305525:73312099:73312181,	73305419	73305525	73305524	73305524	Nonsense_Mutation	C	T	p.R87*
UCEC	TCGA-B5-A0JY-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2	chr13	75876378:75876537:75880448:75880607:75884077:75884287,	75880449	75880607	75880452	75880452	Nonsense_Mutation	C	A	p.E917*
UCEC	TCGA-B5-A11E-01	TBC1D4	ENST00000431480.2,ENST00000488955.1	chr13	75894149:75894173:75898372:75898537:75900332:75900386,75886917:75887034:75898372:75898537:75900332:75900386,	75898373	75898537	75898521	75898521	Nonsense_Mutation	G	A	p.R684*
UCEC	TCGA-BS-A0UF-01	TBC1D4	ENST00000431480.2,ENST00000488955.1	chr13	75894149:75894173:75898372:75898537:75900332:75900386,75886917:75887034:75898372:75898537:75900332:75900386,	75898373	75898537	75898521	75898521	Nonsense_Mutation	G	A	p.R684*
UCEC	TCGA-AX-A0J0-01	TBC1D4	ENST00000431480.2,ENST00000488955.1	chr13	75894149:75894173:75898372:75898537:75900332:75900386,75886917:75887034:75898372:75898537:75900332:75900386,	75898373	75898537	75898521	75898521	Nonsense_Mutation	G	A	p.R684*
UCEC	TCGA-D1-A17Q-01	LMO7	ENST00000447038.1	chr13	76378455:76378677:76381615:76382335:76383289:76383319,	76381616	76382335	76382124	76382124	Nonsense_Mutation	G	T	p.E336*
UCEC	TCGA-BS-A0UF-01	FBXL3	ENST00000417323.1	chr13	77592734:77592857:77595791:77595996:77600961:77601220,	77595792	77595996	77595953	77595953	Nonsense_Mutation	C	A	p.E15*
UCEC	TCGA-BS-A0UF-01	FBXL3	ENST00000355619.5	chr13	77592734:77592857:77595647:77595996:77600961:77601220,	77595648	77595996	77595953	77595953	Nonsense_Mutation	C	A	p.E15*
UCEC	TCGA-AX-A0J0-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671898	77671898	Nonsense_Mutation	C	A	p.E3093*
UCEC	TCGA-AX-A05Z-01	SCEL	ENST00000471491.1,ENST00000377246.3	chr13	78163278:78163359:78165529:78165595:78167648:78167708,78163278:78163359:78165529:78165595:78171679:78171724,	78165530	78165595	78165564	78165564	Nonsense_Mutation	G	T	p.E221*
UCEC	TCGA-AP-A056-01	SCEL	ENST00000535157.1,ENST00000349847.3	chr13	78167648:78167708:78171679:78171724:78173463:78173523,	78171680	78171724	78171684	78171684	Nonsense_Mutation	G	T	p.E253*
UCEC	TCGA-AX-A05Z-01	EDNRB	ENST00000334286.5,ENST00000377211.4,ENST00000446573.1	chr13	78473993:78474102:78474655:78474789:78475192:78475342,	78474656	78474789	78474736	78474736	Nonsense_Mutation	G	T	p.C335*
UCEC	TCGA-BS-A0UF-01	NDFIP2	ENST00000218652.7,ENST00000465762.1,ENST00000487865.1	chr13	80122462:80122529:80125151:80125257:80126650:80126713,	80125152	80125257	80125172	80125172	Nonsense_Mutation	G	T	p.G310*
UCEC	TCGA-D1-A103-01	ABCC4	ENST00000538287.1,ENST00000376887.4,ENST00000412704.1,ENST00000431522.1,ENST00000536256.1	chr13	95858785:95859035:95860053:95860179:95861687:95861851,	95860054	95860179	95860133	95860133	Nonsense_Mutation	C	A	p.E278*
UCEC	TCGA-B5-A0JY-01	DNAJC3	ENST00000602402.1	chr13	96377431:96377506:96409897:96410050:96412293:96412475,	96409898	96410050	96409925	96409925	Nonsense_Mutation	G	T	p.E141*
UCEC	TCGA-BS-A0UV-01	STK24	ENST00000397517.2,ENST00000444574.1,ENST00000491878.1,ENST00000376547.3	chr13	99127503:99127612:99134518:99134575:99171496:99171521,	99134519	99134575	99134569	99134569	Nonsense_Mutation	T	A	p.K106*
UCEC	TCGA-B5-A11N-01	DOCK9	ENST00000442173.1,ENST00000448493.2,ENST00000339416.2,ENST00000376460.1,ENST00000427887.1	chr13	99575555:99575625:99578090:99578173:99582421:99582511,	99578091	99578173	99578104	99578104	Nonsense_Mutation	G	A	p.R136*
UCEC	TCGA-AP-A056-01	CLYBL	ENST00000376355.3,ENST00000376354.1,ENST00000339105.4,ENST00000419700.1,ENST00000376360.1	chr13	100518570:100518661:100523191:100523316:100543571:100543691,	100523192	100523316	100523296	100523296	Nonsense_Mutation	G	T	p.E303*
UCEC	TCGA-AP-A056-01	TMTC4	ENST00000376234.3,ENST00000342624.5	chr13	101294464:101294565:101308634:101308722:101315217:101315434,	101308635	101308722	101308638	101308638	Nonsense_Mutation	C	A	p.E213*
UCEC	TCGA-B5-A0JY-01	COL4A2	ENST00000360467.5,ENST00000400163.2	chr13	110960415:110960470:111009818:111009899:111077080:111077215,	111009819	111009899	111009849	111009849	Nonsense_Mutation	G	T	p.G44*
UCEC	TCGA-B5-A11N-01	TUBGCP3	ENST00000261965.3	chr13	113140157:113140465:113143894:113144011:113153358:113153499,	113143895	113144011	113143948	113143948	Nonsense_Mutation	C	A	p.E838*
UCEC	TCGA-AX-A0J0-01	TMCO3	ENST00000375391.1,ENST00000474393.1,ENST00000434316.2	chr13	114156066:114156195:114157810:114157903:114164552:114164739,	114157811	114157903	114157838	114157838	Nonsense_Mutation	G	T	p.E325*
UCEC	TCGA-D1-A103-01	TFDP1	ENST00000408980.2,ENST00000375370.5,ENST00000453989.1,ENST00000475254.1	chr13	114277494:114277601:114285937:114286059:114287434:114287596,	114285938	114286059	114285986	114285986	Nonsense_Mutation	G	T	p.G79*
UCEC	TCGA-D1-A103-01	TFDP1	ENST00000465174.1	chr13	114277494:114277601:114285937:114286220:114287434:114287596,	114285938	114286220	114285986	114285986	Nonsense_Mutation	G	T	p.G79*
UCEC	TCGA-AP-A054-01	UPF3A	ENST00000475218.2,ENST00000375299.3,ENST00000351487.5	chr13	115064314:115064475:115067205:115067500:115070263:115070424,	115067206	115067500	115067486	115067486	Nonsense_Mutation	C	T	p.R430*
UCEC	TCGA-AP-A0LM-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555727.1	chr14	20873609:20873744:20874391:20874559:20876031:20876622,	20874392	20874559	20874523	20874523	Nonsense_Mutation	C	A	p.E202*
UCEC	TCGA-AP-A059-01	ARHGEF40	ENST00000298693.3,ENST00000555038.1,ENST00000298694.4,ENST00000553709.1	chr14	21541203:21541401:21542090:21543339:21543490:21543658,	21542091	21543339	21542423	21542423	Nonsense_Mutation	G	A	p.W178*
UCEC	TCGA-AP-A059-01	ARHGEF40	ENST00000556399.1	chr14	21541203:21541401:21542090:21543150:21543490:21543658,	21542091	21543150	21542423	21542423	Nonsense_Mutation	G	A	p.W178*
UCEC	TCGA-BS-A0UV-01	METTL3	ENST00000396522.2	chr14	21967635:21967744:21967907:21967946:21968636:21968824,21967635:21967744:21967907:21967946:21969054:21969271,21967635:21967744:21967907:21967946:21971315:21971434,	21967908	21967946	21967927	21967927	Nonsense_Mutation	C	A	p.E442*
UCEC	TCGA-D1-A15X-01	PCK2	ENST00000559250.1,ENST00000559503.1,ENST00000561286.1,ENST00000545054.2,ENST00000558096.1,ENST00000216780.4	chr14	24568766:24568929:24569203:24569422:24571961:24572039,	24569204	24569422	24569206	24569206	Nonsense_Mutation	C	T	p.R340*
UCEC	TCGA-AX-A05Z-01	RNF31	ENST00000324103.6,ENST00000559449.1,ENST00000559071.1,ENST00000382687.3,ENST00000560787.1,ENST00000559719.1,ENST00000491351.1,ENST00000559275.1	chr14	24627350:24627408:24629072:24629169:24629447:24629616,	24629073	24629169	24629123	24629123	Nonsense_Mutation	G	T	p.E984*
UCEC	TCGA-D1-A167-01	RABGGTA	ENST00000216840.6,ENST00000559551.1,ENST00000558376.1,ENST00000560998.1,ENST00000399409.3,ENST00000560777.1,ENST00000559974.1,ENST00000543002.1	chr14	24738116:24738199:24738285:24738369:24738696:24738757,	24738286	24738369	24738314	24738314	Nonsense_Mutation	C	T	p.W229*
UCEC	TCGA-BS-A0UF-01	DHRS1	ENST00000559483.1,ENST00000288111.7,ENST00000561273.1,ENST00000558340.1,ENST00000396813.1	chr14	24765714:24765794:24765943:24766087:24768162:24768336,	24765944	24766087	24766024	24766024	Nonsense_Mutation	G	A	p.R72*
UCEC	TCGA-BS-A0UF-01	ADCY4	ENST00000310677.4,ENST00000554781.1,ENST00000554577.1,ENST00000396747.3,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24792549:24792660:24793267:24793405:24793512:24793597,	24793268	24793405	24793333	24793333	Nonsense_Mutation	C	A	p.G661*
UCEC	TCGA-B5-A11E-01	KHNYN	ENST00000556842.1,ENST00000556255.1,ENST00000251343.5,ENST00000553935.1,ENST00000554268.1	chr14	24905277:24905385:24905593:24905695:24906241:24906631,	24905594	24905695	24905652	24905652	Nonsense_Mutation	C	T	p.R582*
UCEC	TCGA-BS-A0UF-01	SCFD1	ENST00000311943.7,ENST00000541123.1	chr14	31103152:31103243:31107330:31107453:31112521:31112611,	31107331	31107453	31107337	31107337	Nonsense_Mutation	C	T	p.R107*
UCEC	TCGA-BS-A0UF-01	COCH	ENST00000216361.4,ENST00000396618.3,ENST00000475087.1,ENST00000460581.2	chr14	31353758:31353862:31354599:31354826:31355001:31355518,	31354600	31354826	31354788	31354788	Nonsense_Mutation	G	T	p.E308*
UCEC	TCGA-BS-A0UV-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563239	32563239	Nonsense_Mutation	C	T	p.R1122*
UCEC	TCGA-BS-A0UF-01	NPAS3	ENST00000356141.4,ENST00000341321.4	chr14	33404138:33404209:33525110:33525200:33684387:33684632,33408522:33408572:33525110:33525200:33684387:33684632,	33525111	33525200	33525145	33525145	Nonsense_Mutation	G	T	p.E29*
UCEC	TCGA-AP-A059-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3,ENST00000555416.1	chr14	35037097:35037219:35044961:35045048:35050766:35050806,	35044962	35045048	35045036	35045036	Nonsense_Mutation	G	A	p.R295*
UCEC	TCGA-BS-A0UV-01	BAZ1A	ENST00000382422.2,ENST00000360310.1	chr14	35255331:35255427:35261980:35262127:35263954:35264093,	35261981	35262127	35262020	35262020	Nonsense_Mutation	C	A	p.E491*
UCEC	TCGA-B5-A0JY-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35276656:35276744:35280140:35280242:35295218:35295362,	35280141	35280242	35280181	35280181	Nonsense_Mutation	C	A	p.E200*
UCEC	TCGA-A5-A0GP-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35280147:35280242:35295218:35295362:35331249:35331313,	35295219	35295362	35295280	35295280	Nonsense_Mutation	C	A	p.E159*
UCEC	TCGA-AX-A05Z-01	SRP54	ENST00000556994.1,ENST00000216774.6,ENST00000555535.1,ENST00000555746.1	chr14	35465882:35465993:35468763:35468855:35470141:35470193,	35468764	35468855	35468785	35468785	Nonsense_Mutation	G	T	p.E34*
UCEC	TCGA-BS-A0UF-01	SRP54	ENST00000556994.1,ENST00000216774.6,ENST00000555535.1,ENST00000555746.1	chr14	35465882:35465993:35468763:35468855:35470141:35470193,	35468764	35468855	35468845	35468845	Nonsense_Mutation	G	T	p.E54*
UCEC	TCGA-D1-A16X-01	SEC23A	ENST00000545328.2	chr14	39556132:39556212:39560680:39560917:39562390:39562448,	39560681	39560917	39560823	39560823	Nonsense_Mutation	G	T	p.S154*
UCEC	TCGA-B5-A11E-01	GEMIN2	ENST00000250379.8	chr14	39594195:39594240:39597483:39597552:39601161:39601227,39591633:39591747:39597483:39597552:39601161:39601227,	39597484	39597552	39597505	39597505	Nonsense_Mutation	G	T	p.E196*
UCEC	TCGA-D1-A16X-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42356666	42356666	Nonsense_Mutation	G	T	p.E280*
UCEC	TCGA-AX-A0J0-01	FANCM	ENST00000267430.5,ENST00000542564.2,ENST00000556250.1	chr14	45658004:45658565:45665374:45665750:45667846:45668038,	45665375	45665750	45665528	45665528	Nonsense_Mutation	G	T	p.E1832*
UCEC	TCGA-BS-A0TC-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693269	45693269	Nonsense_Mutation	C	A	p.E841*
UCEC	TCGA-AP-A0LM-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693323	45693323	Nonsense_Mutation	C	A	p.E823*
UCEC	TCGA-A5-A0VP-01	LRR1	ENST00000298288.6,ENST00000540712.1	chr14	50069087:50069186:50074117:50074839:50080973:50081388,	50074118	50074839	50074337	50074337	Nonsense_Mutation	C	T	p.R168*
UCEC	TCGA-D1-A103-01	NEMF	ENST00000555970.1,ENST00000545773.1,ENST00000556925.1,ENST00000298310.5	chr14	50269954:50270012:50272738:50272851:50280705:50280768,	50272739	50272851	50272849	50272849	Nonsense_Mutation	C	A	p.E583*
UCEC	TCGA-BS-A0UF-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50597218:50597480:50600840:50600957:50605329:50605502,	50600841	50600957	50600912	50600912	Nonsense_Mutation	C	A	p.E1002*
UCEC	TCGA-BS-A0UF-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50649180:50649324:50655214:50655418:50666408:50666573,	50655215	50655418	50655256	50655256	Nonsense_Mutation	G	A	p.R225*
UCEC	TCGA-B5-A0JY-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50649180:50649324:50655214:50655418:50666408:50666573,	50655215	50655418	50655256	50655256	Nonsense_Mutation	G	A	p.R225*
UCEC	TCGA-BS-A0UV-01	CDKL1	ENST00000395834.1	chr14	50796829:50796899:50798979:50799150:50801282:50801339,	50798980	50799150	50799072	50799072	Nonsense_Mutation	C	A	p.E293*
UCEC	TCGA-D1-A167-01	ATL1	ENST00000354525.4,ENST00000441560.2	chr14	51089894:51089966:51094748:51095180:51096712:51096727,51089894:51089966:51094748:51095180:51098946:51099038,	51094749	51095180	51094836	51094836	Nonsense_Mutation	C	T	p.R403*
UCEC	TCGA-D1-A103-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223976	51223976	Nonsense_Mutation	C	A	p.E1258*
UCEC	TCGA-AP-A0LM-01	NID2	ENST00000556572.1,ENST00000541773.1,ENST00000216286.5	chr14	52481771:52481993:52485778:52486012:52486776:52486896,	52485779	52486012	52485839	52485839	Nonsense_Mutation	C	A	p.E990*
UCEC	TCGA-AX-A0J0-01	PSMC6	ENST00000555887.1,ENST00000554956.1,ENST00000556813.1,ENST00000554044.1,ENST00000554952.1,ENST00000606149.1,ENST00000557240.1	chr14	53173939:53174022:53175026:53175106:53175200:53175240,	53175027	53175106	53175044	53175044	Nonsense_Mutation	G	T	p.E49*
UCEC	TCGA-BS-A0UF-01	DDHD1	ENST00000323669.5,ENST00000395606.1,ENST00000555400.1,ENST00000556027.1,ENST00000357758.3	chr14	53521155:53521347:53522377:53522630:53525194:53525344,	53522378	53522630	53522414	53522414	Nonsense_Mutation	C	A	p.E737*
UCEC	TCGA-AX-A05Z-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56078857	56078857	Nonsense_Mutation	G	T	p.E31*
UCEC	TCGA-BS-A0UF-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56078857	56078857	Nonsense_Mutation	G	T	p.E31*
UCEC	TCGA-D1-A17Q-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56078896	56078896	Nonsense_Mutation	G	T	p.E44*
UCEC	TCGA-AX-A0J0-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56079160	56079160	Nonsense_Mutation	G	T	p.E132*
UCEC	TCGA-BS-A0UV-01	KTN1	ENST00000413890.2,ENST00000395309.3,ENST00000555172.1,ENST00000416613.1,ENST00000395314.3,ENST00000459737.1,ENST00000395308.1,ENST00000555573.1,ENST00000553624.1,ENST00000395311.1	chr14	56128239:56128330:56133958:56134048:56137446:56137527,56130672:56130759:56133958:56134048:56137446:56137527,	56133959	56134048	56134017	56134017	Nonsense_Mutation	T	G	p.L1079*
UCEC	TCGA-AP-A059-01	EXOC5	ENST00000340918.7	chr14	57710996:57711077:57713428:57713576:57714335:57714361,57706312:57706377:57713428:57713576:57714335:57714361,	57713429	57713576	57713452	57713452	Nonsense_Mutation	G	A	p.Q83*
UCEC	TCGA-AP-A059-01	EXOC5	ENST00000555148.1	chr14	57710996:57711077:57713428:57713545:57714335:57714361,	57713429	57713545	57713452	57713452	Nonsense_Mutation	G	A	p.Q83*
UCEC	TCGA-AX-A0J1-01	PSMA3	ENST00000555931.1	chr14	58724642:58724716:58727676:58727738:58730422:58730488,	58727677	58727738	58727703	58727703	Nonsense_Mutation	C	T	p.Q148*
UCEC	TCGA-AX-A0J1-01	PSMA3	ENST00000557087.1,ENST00000557508.1,ENST00000554812.1,ENST00000555743.1,ENST00000216455.4	chr14	58724642:58724716:58727665:58727738:58730422:58730488,	58727666	58727738	58727703	58727703	Nonsense_Mutation	C	T	p.Q148*
UCEC	TCGA-AX-A0J1-01	PSMA3	ENST00000412908.2	chr14	58724642:58724716:58727686:58727738:58730422:58730488,	58727687	58727738	58727703	58727703	Nonsense_Mutation	C	T	p.Q148*
UCEC	TCGA-AP-A056-01	ARID4A	ENST00000395168.3,ENST00000445108.1,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58790202:58790335:58794954:58795034:58796245:58796322,	58794955	58795034	58795016	58795016	Nonsense_Mutation	C	A	p.S215*
UCEC	TCGA-AP-A0LM-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000417477.2,ENST00000348476.3	chr14	58825849:58825934:58827618:58827760:58830887:58832018,	58827619	58827760	58827758	58827758	Nonsense_Mutation	C	A	p.S693*
UCEC	TCGA-AX-A0J0-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831391	58831391	Nonsense_Mutation	C	T	p.Q862*
UCEC	TCGA-B5-A0JY-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000555397.1,ENST00000354386.6	chr14	58965500:58965678:58975272:58975427:58979239:58979345,	58975273	58975427	58975383	58975383	Nonsense_Mutation	G	T	p.E1351*
UCEC	TCGA-AP-A056-01	DAAM1	ENST00000557029.1,ENST00000360909.3,ENST00000553307.1,ENST00000557628.1,ENST00000351081.1,ENST00000395125.1	chr14	59826114:59826222:59827519:59827580:59830368:59830500,	59827520	59827580	59827539	59827539	Nonsense_Mutation	G	T	p.E895*
UCEC	TCGA-D1-A15X-01	DHRS7	ENST00000216500.5,ENST00000536410.2,ENST00000557185.1	chr14	60611523:60611731:60616070:60616286:60616782:60616835,	60616071	60616286	60616122	60616122	Nonsense_Mutation	C	T	p.W307*
UCEC	TCGA-B5-A11N-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442841	61442841	Nonsense_Mutation	G	A	p.R266*
UCEC	TCGA-D1-A17Q-01	HIF1A	ENST00000323441.6	chr14	62207472:62207906:62211422:62211531:62212408:62212535,62207472:62207906:62211422:62211531:62213651:62214190,	62211423	62211531	62211442	62211442	Nonsense_Mutation	G	T	p.E705*
UCEC	TCGA-BS-A0UV-01	KCNH5	ENST00000322893.7,ENST00000394968.1	chr14	63246445:63246642:63269046:63269299:63316370:63316570,	63269047	63269299	63269215	63269215	Nonsense_Mutation	G	A	p.R552*
UCEC	TCGA-AX-A0J1-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000557060.1,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64540705:64540854:64542662:64542818:64545183:64545324,	64542663	64542818	64542723	64542723	Nonsense_Mutation	C	T	p.R3643*
UCEC	TCGA-AX-A0J0-01	PPP1R36	ENST00000298705.1,ENST00000467261.1	chr14	65035066:65035165:65041172:65041307:65053554:65053597,	65041173	65041307	65041236	65041236	Nonsense_Mutation	C	A	p.Y199*
UCEC	TCGA-A5-A0G9-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000305960.9,ENST00000543237.1	chr14	67576856:67576976:67578577:67578636:67579734:67579888,	67578578	67578636	67578599	67578599	Nonsense_Mutation	C	T	p.R479*
UCEC	TCGA-B5-A0JY-01	MPP5	ENST00000261681.4,ENST00000555925.1	chr14	67779243:67779427:67783548:67783620:67784124:67784196,	67783549	67783620	67783593	67783593	Nonsense_Mutation	G	T	p.E424*
UCEC	TCGA-AP-A056-01	RAD51B	ENST00000488612.1	chr14	68934888:68934967:69117497:69117573:69196524:69196935,	69117498	69117573	69117548	69117548	Nonsense_Mutation	G	T	p.E363*
UCEC	TCGA-AP-A059-01	ACTN1	ENST00000193403.6,ENST00000438964.2,ENST00000376839.3,ENST00000556083.1,ENST00000394419.4,ENST00000544964.2,ENST00000538545.2	chr14	69350884:69351025:69351491:69351600:69352141:69352292,	69351492	69351600	69351509	69351509	Nonsense_Mutation	G	A	p.R493*
UCEC	TCGA-AP-A051-01	ACTN1	ENST00000193403.6,ENST00000438964.2,ENST00000376839.3,ENST00000556083.1,ENST00000394419.4,ENST00000544964.2,ENST00000538545.2	chr14	69350884:69351025:69351491:69351600:69352141:69352292,	69351492	69351600	69351509	69351509	Nonsense_Mutation	G	A	p.R493*
UCEC	TCGA-BS-A0UF-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634017	70634017	Nonsense_Mutation	C	A	p.E375*
UCEC	TCGA-AX-A0J0-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054863	72054863	Nonsense_Mutation	G	T	p.E92*
UCEC	TCGA-BS-A0UF-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72055106	72055106	Nonsense_Mutation	C	T	p.R173*
UCEC	TCGA-AP-A051-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117175	72117175	Nonsense_Mutation	C	T	p.R648*
UCEC	TCGA-AP-A051-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117175	72117175	Nonsense_Mutation	C	T	p.R648*
UCEC	TCGA-AX-A0J0-01	RGS6	ENST00000434263.2,ENST00000556437.1,ENST00000553530.1,ENST00000555571.1,ENST00000404301.2,ENST00000402788.2,ENST00000406236.4,ENST00000554474.1,ENST00000407322.4,ENST00000554782.1,ENST00000553525.1,ENST00000355512.6	chr14	72944975:72945037:72961859:72961970:72976861:72976987,	72961860	72961970	72961862	72961862	Nonsense_Mutation	T	G	p.L286*
UCEC	TCGA-D1-A17Q-01	DCAF4	ENST00000358377.2,ENST00000553457.1,ENST00000555042.1,ENST00000394234.2	chr14	73408452:73408532:73409701:73409804:73412591:73412635,	73409702	73409804	73409754	73409754	Nonsense_Mutation	C	T	p.R162*
UCEC	TCGA-AP-A056-01	DCAF4	ENST00000358377.2,ENST00000553457.1,ENST00000555042.1,ENST00000394234.2	chr14	73408452:73408532:73409701:73409804:73412591:73412635,	73409702	73409804	73409754	73409754	Nonsense_Mutation	C	T	p.R162*
UCEC	TCGA-BS-A0UV-01	RBM25	ENST00000261973.7,ENST00000540173.1,ENST00000532683.1,ENST00000531500.1,ENST00000527432.1,ENST00000525321.1,ENST00000525161.1,ENST00000526754.1	chr14	73543026:73543076:73544076:73544244:73550201:73550259,	73544077	73544244	73544152	73544152	Nonsense_Mutation	G	T	p.E78*
UCEC	TCGA-BS-A0UF-01	HEATR4	ENST00000560393.1,ENST00000334988.2,ENST00000553558.1	chr14	73959769:73959828:73961931:73962091:73963304:73963383,	73961932	73962091	73961944	73961944	Nonsense_Mutation	C	A	p.E878*
UCEC	TCGA-AX-A0J0-01	DNAL1	ENST00000554871.1,ENST00000553645.2,ENST00000540526.1,ENST00000554339.1,ENST00000311089.3	chr14	74153961:74154088:74156077:74156218:74162604:74162645,	74156078	74156218	74156179	74156179	Nonsense_Mutation	G	T	p.E165*
UCEC	TCGA-B5-A11N-01	YLPM1	ENST00000238571.3,ENST00000325680.7	chr14	75230068:75231065:75245149:75245386:75247107:75247287,	75245150	75245386	75245171	75245171	Nonsense_Mutation	C	T	p.R299*
UCEC	TCGA-AP-A0LM-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265442	75265442	Nonsense_Mutation	C	T	p.R1148*
UCEC	TCGA-AP-A056-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75266120	75266120	Nonsense_Mutation	C	T	p.R1374*
UCEC	TCGA-AP-A0LM-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514603	75514603	Nonsense_Mutation	C	A	p.E586*
UCEC	TCGA-D1-A17Q-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515074	75515074	Nonsense_Mutation	C	A	p.E429*
UCEC	TCGA-AX-A0J0-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515686	75515686	Nonsense_Mutation	C	A	p.E225*
UCEC	TCGA-B5-A0JY-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515686	75515686	Nonsense_Mutation	C	A	p.E225*
UCEC	TCGA-AX-A0J0-01	TMED10	ENST00000555036.1	chr14	75601490:75601709:75602365:75602589:75614366:75614440,	75602366	75602589	75602547	75602547	Nonsense_Mutation	G	A	p.R152*
UCEC	TCGA-AX-A0J0-01	TMED10	ENST00000556969.1,ENST00000557670.1,ENST00000303575.4	chr14	75601490:75601709:75602462:75602589:75614366:75614440,	75602463	75602589	75602547	75602547	Nonsense_Mutation	G	A	p.R152*
UCEC	TCGA-AX-A0J0-01	TSHR	ENST00000555326.1	chr14	81534597:81534672:81554248:81554372:81557412:81557476,	81554249	81554372	81554299	81554299	Nonsense_Mutation	G	T	p.E107*
UCEC	TCGA-AX-A0J0-01	TSHR	ENST00000298171.2,ENST00000554263.1,ENST00000541158.2,ENST00000554435.1,ENST00000342443.6	chr14	81534597:81534672:81554297:81554372:81557412:81557476,	81554298	81554372	81554299	81554299	Nonsense_Mutation	G	T	p.E107*
UCEC	TCGA-BS-A0UF-01	PTPN21	ENST00000554270.1,ENST00000556564.1,ENST00000554628.1,ENST00000536337.1,ENST00000328736.3,ENST00000555243.1	chr14	88971647:88971715:88974266:88974364:88983435:88983605,	88974267	88974364	88974355	88974355	Nonsense_Mutation	A	C	p.Y120*
UCEC	TCGA-D1-A17H-01	TDP1	ENST00000554976.1,ENST00000545686.2,ENST00000357382.3,ENST00000555178.1,ENST00000393454.2,ENST00000335725.4	chr14	90485659:90485762:90499449:90499558:90509413:90509596,	90499450	90499558	90499491	90499491	Nonsense_Mutation	C	T	p.Q578*
UCEC	TCGA-D1-A103-01	TTC7B	ENST00000328459.6,ENST00000555894.1	chr14	91059829:91059970:91077085:91077183:91084272:91084367,	91077086	91077183	91077134	91077134	Nonsense_Mutation	G	A	p.R640*
UCEC	TCGA-AX-A0J0-01	TC2N	ENST00000360594.5,ENST00000556018.1	chr14	92278655:92278889:92280046:92280169:92302714:92302791,	92280047	92280169	92280104	92280104	Nonsense_Mutation	C	A	p.E4*
UCEC	TCGA-B5-A11E-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92469840	92469840	Nonsense_Mutation	G	A	p.R1494*
UCEC	TCGA-D1-A17Q-01	ATXN3	ENST00000556374.1,ENST00000554214.1,ENST00000556958.1,ENST00000553686.1,ENST00000557311.1,ENST00000393287.5,ENST00000556671.1,ENST00000553491.1,ENST00000553570.1,ENST00000555958.1,ENST00000340660.6,ENST00000556315.1,ENST00000553287.1,ENST00000555381.1,ENST00000359366.5,ENST00000545170.1,ENST00000515746.1,ENST00000556288.1,ENST00000553498.1,ENST00000556898.1,ENST00000556220.1,ENST00000554592.1,ENST00000556274.1,ENST00000502250.1,ENST00000553488.1,ENST00000429774.2,ENST00000554672.1,ENST00000532032.1,ENST00000554673.1,ENST00000554491.1,ENST00000506466.1,ENST00000554994.1,ENST00000554350.1,ENST00000503767.1,ENST00000553309.1	chr14	92547366:92547405:92548643:92548810:92549469:92549579,	92548644	92548810	92548704	92548704	Nonsense_Mutation	C	A	p.E239*
UCEC	TCGA-AP-A059-01	ATXN3	ENST00000555381.1	chr14	92555073:92555161:92560089:92560175:92562436:92562478,92559595:92559662:92560089:92560175:92562436:92562478,92559595:92559662:92560089:92560175:92572872:92572906,	92560090	92560175	92560142	92560142	Nonsense_Mutation	C	A	p.E90*
UCEC	TCGA-AP-A059-01	ATXN3	ENST00000556374.1	chr14	92559595:92559662:92560089:92560194:92562436:92562481,	92560090	92560194	92560142	92560142	Nonsense_Mutation	C	A	p.E90*
UCEC	TCGA-D1-A103-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93263752:93264326:93273080:93273308:93275644:93275864,	93273081	93273308	93273266	93273266	Nonsense_Mutation	G	T	p.E244*
UCEC	TCGA-AP-A0LM-01	UBR7	ENST00000416753.1,ENST00000013070.6,ENST00000553674.1	chr14	93685557:93685707:93686594:93686757:93688658:93688720,	93686595	93686757	93686658	93686658	Nonsense_Mutation	G	T	p.E342*
UCEC	TCGA-D1-A16X-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760918	93760918	Nonsense_Mutation	C	A	p.E150*
UCEC	TCGA-D1-A16X-01	DDX24	ENST00000330836.5	chr14	94528820:94528967:94545370:94546093:94547464:94547492,	94545371	94546093	94545740	94545740	Nonsense_Mutation	C	A	p.E117*
UCEC	TCGA-D1-A16X-01	DDX24	ENST00000555054.1	chr14	94528820:94528967:94545370:94545967:94547464:94547492,	94545371	94545967	94545740	94545740	Nonsense_Mutation	C	A	p.E117*
UCEC	TCGA-BS-A0UF-01	DDX24	ENST00000330836.5	chr14	94528820:94528967:94545370:94546093:94547464:94547492,	94545371	94546093	94545740	94545740	Nonsense_Mutation	C	A	p.E117*
UCEC	TCGA-BS-A0UF-01	DDX24	ENST00000555054.1	chr14	94528820:94528967:94545370:94545967:94547464:94547492,	94545371	94545967	94545740	94545740	Nonsense_Mutation	C	A	p.E117*
UCEC	TCGA-B5-A11R-01	DDX24	ENST00000330836.5	chr14	94528820:94528967:94545370:94546093:94547464:94547492,	94545371	94546093	94546066	94546066	Nonsense_Mutation	G	C	p.S8*
UCEC	TCGA-AX-A05Z-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662971	95662971	Nonsense_Mutation	C	A	p.E858*
UCEC	TCGA-D1-A17Q-01	AK7	ENST00000267584.4	chr14	96917757:96917907:96922683:96922812:96924419:96924549,	96922684	96922812	96922741	96922741	Nonsense_Mutation	G	T	p.E386*
UCEC	TCGA-D1-A16X-01	AK7	ENST00000267584.4	chr14	96917757:96917907:96922683:96922812:96924419:96924549,	96922684	96922812	96922741	96922741	Nonsense_Mutation	G	T	p.E386*
UCEC	TCGA-AP-A059-01	PAPOLA	ENST00000392990.2	chr14	97026985:97027048:97029155:97029230:97031291:97031325,97022511:97022750:97029155:97029230:97031291:97031325,	97029156	97029230	97029171	97029171	Nonsense_Mutation	G	T	p.E695*
UCEC	TCGA-B5-A11E-01	VRK1	ENST00000216639.3	chr14	97322864:97322923:97326893:97327072:97342366:97342457,	97326894	97327072	97326983	97326983	Nonsense_Mutation	G	T	p.G327*
UCEC	TCGA-D1-A16X-01	VRK1	ENST00000216639.3,ENST00000555067.1	chr14	97326983:97327072:97342366:97342457:97347513:97347596,	97342367	97342457	97342379	97342379	Nonsense_Mutation	G	T	p.E361*
UCEC	TCGA-D1-A16X-01	ZNF839	ENST00000559098.1,ENST00000262236.5,ENST00000442396.2	chr14	102786294:102786390:102792321:102793224:102797958:102798183,	102792322	102793224	102792358	102792358	Nonsense_Mutation	G	T	p.E109*
UCEC	TCGA-AX-A05Z-01	RCOR1	ENST00000560472.1	chr14	103187656:103187714:103188523:103188753:103192804:103192898,103187358:103187421:103188523:103188753:103192804:103192922,	103188524	103188753	103188616	103188616	Nonsense_Mutation	C	T	p.R425*
UCEC	TCGA-BS-A0UV-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000559274.1,ENST00000429436.2	chr14	103934422:103934523:103941329:103941547:103946723:103946827,	103941330	103941547	103941404	103941404	Nonsense_Mutation	G	T	p.E447*
UCEC	TCGA-AX-A0J0-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000559274.1,ENST00000429436.2	chr14	103941460:103941547:103946723:103946827:103958113:103958371,	103946724	103946827	103946820	103946820	Nonsense_Mutation	G	T	p.E527*
UCEC	TCGA-B5-A11E-01	MARK3	ENST00000303622.9,ENST00000416682.2,ENST00000216288.7	chr14	103946773:103946827:103958113:103958371:103964838:103964865,103946773:103946827:103958113:103958371:103966492:103966537,103946773:103946827:103958113:103958371:103969218:103969403,	103958114	103958371	103958316	103958316	Nonsense_Mutation	C	T	p.R597*
UCEC	TCGA-B5-A0JY-01	MARK3	ENST00000303622.9,ENST00000416682.2,ENST00000216288.7	chr14	103946773:103946827:103958113:103958371:103964838:103964865,103946773:103946827:103958113:103958371:103966492:103966537,103946773:103946827:103958113:103958371:103969218:103969403,	103958114	103958371	103958316	103958316	Nonsense_Mutation	C	T	p.R597*
UCEC	TCGA-BS-A0UF-01	PPP1R13B	ENST00000202556.9,ENST00000557082.1	chr14	104219336:104219533:104220406:104220581:104223986:104224088,	104220407	104220581	104220488	104220488	Nonsense_Mutation	C	A	p.E184*
UCEC	TCGA-D1-A160-01	SIVA1	ENST00000535554.2,ENST00000553810.1,ENST00000553819.1	chr14	105219538:105219656:105221966:105222161:105222940:105223004,	105221967	105222161	105221978	105221978	Nonsense_Mutation	C	T	p.R44*
UCEC	TCGA-AP-A059-01	MTA1	ENST00000331320.7,ENST00000438610.1,ENST00000490198.1,ENST00000406191.1,ENST00000405646.1,ENST00000434050.1	chr14	105927230:105927290:105929520:105929595:105929829:105929888,	105929521	105929595	105929556	105929556	Nonsense_Mutation	C	A	p.Y326*
UCEC	TCGA-BS-A0TC-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25615955	25615955	Nonsense_Mutation	C	A	p.E459*
UCEC	TCGA-AP-A0LM-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28000020:28000618:28090104:28090198:28096527:28096621,	28090105	28090198	28090115	28090115	Nonsense_Mutation	C	A	p.E808*
UCEC	TCGA-AX-A0J0-01	HERC2	ENST00000261609.7	chr15	28389818:28389950:28391382:28391490:28397822:28397976,	28391383	28391490	28391470	28391470	Nonsense_Mutation	C	A	p.E3641*
UCEC	TCGA-BS-A0UV-01	TJP1	ENST00000495972.2,ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30053803:30053972:30054537:30054641:30058468:30058745,	30054538	30054641	30054558	30054558	Nonsense_Mutation	C	A	p.E225*
UCEC	TCGA-BS-A0UF-01	FMN1	ENST00000559047.1,ENST00000334528.9	chr15	33260914:33261678:33300214:33300276:33445248:33447115,33260914:33261678:33300214:33300276:33357157:33357275,	33300215	33300276	33300232	33300232	Nonsense_Mutation	C	A	p.E513*
UCEC	TCGA-BS-A0UF-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34048506:34048574:34049675:34049797:34060858:34060908,	34049676	34049797	34049784	34049784	Nonsense_Mutation	G	T	p.E2898*
UCEC	TCGA-AP-A0LM-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34130377	34130377	Nonsense_Mutation	C	T	p.R4066*
UCEC	TCGA-BS-A0UF-01	AQR	ENST00000543879.2,ENST00000560117.1,ENST00000156471.5,ENST00000558202.1	chr15	35245085:35245121:35252974:35253015:35256434:35256491,	35252975	35253015	35252991	35252991	Nonsense_Mutation	C	A	p.E53*
UCEC	TCGA-AP-A051-01	RASGRP1	ENST00000557875.1	chr15	38786652:38786968:38790994:38791385:38792303:38792340,	38790995	38791385	38791088	38791088	Nonsense_Mutation	G	A	p.R594*
UCEC	TCGA-AP-A051-01	RASGRP1	ENST00000559830.1	chr15	38786652:38786968:38790994:38791147:38792303:38792340,38782754:38782889:38790994:38791147:38792303:38792340,	38790995	38791147	38791088	38791088	Nonsense_Mutation	G	A	p.R594*
UCEC	TCGA-AP-A056-01	RASGRP1	ENST00000559830.1,ENST00000558432.1,ENST00000558164.1,ENST00000310803.5,ENST00000450598.2,ENST00000561180.1,ENST00000539159.1,ENST00000414708.2	chr15	38799926:38800202:38803804:38803921:38804983:38805157,	38803805	38803921	38803816	38803816	Nonsense_Mutation	C	A	p.E319*
UCEC	TCGA-A5-A0VP-01	NDUFAF1	ENST00000260361.4	chr15	41679691:41679791:41680645:41680720:41687056:41687242,	41680646	41680720	41680690	41680690	Nonsense_Mutation	G	A	p.R264*
UCEC	TCGA-BS-A0UF-01	RTF1	ENST00000389629.4	chr15	41762454:41762590:41763369:41763547:41766817:41766900,	41763370	41763547	41763431	41763431	Nonsense_Mutation	C	T	p.R363*
UCEC	TCGA-AP-A059-01	ITPKA	ENST00000260386.5,ENST00000462816.1	chr15	41794194:41794399:41794599:41794701:41794985:41795057,	41794600	41794701	41794639	41794639	Nonsense_Mutation	C	T	p.R350*
UCEC	TCGA-EY-A1GS-01	TYRO3	ENST00000263798.3,ENST00000559066.1	chr15	41860456:41860560:41861075:41861220:41862224:41862354,	41861076	41861220	41861187	41861187	Nonsense_Mutation	C	T	p.Q407*
UCEC	TCGA-B5-A11N-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021428	42021428	Nonsense_Mutation	C	T	p.R1242*
UCEC	TCGA-AJ-A23M-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42049985:42050037:42052520:42052727:42053936:42054048,	42052521	42052727	42052641	42052641	Nonsense_Mutation	G	T	p.E2487*
UCEC	TCGA-B5-A0K9-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000568255.1,ENST00000570161.1,ENST00000389936.4	chr15	42052520:42052727:42053936:42054048:42054326:42054395,	42053937	42054048	42053985	42053985	Nonsense_Mutation	G	T	p.G2532*
UCEC	TCGA-BS-A0UF-01	UBR1	ENST00000569971.1,ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43335541:43335593:43339358:43339487:43340589:43340689,	43339359	43339487	43339390	43339390	Nonsense_Mutation	A	C	p.L546*
UCEC	TCGA-B5-A0JY-01	EPB42	ENST00000441366.2,ENST00000300215.3,ENST00000540029.1,ENST00000567019.1,ENST00000563128.1	chr15	43494041:43494175:43495312:43495473:43498527:43498827,	43495313	43495473	43495432	43495432	Nonsense_Mutation	G	A	p.R584*
UCEC	TCGA-BS-A0UV-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43678403:43678528:43687304:43687355:43687780:43687886,	43687305	43687355	43687329	43687329	Nonsense_Mutation	G	T	p.E347*
UCEC	TCGA-AP-A051-01	TP53BP1	ENST00000413546.1	chr15	43733723:43733781:43738584:43738788:43748089:43748222,	43738585	43738788	43738609	43738609	Nonsense_Mutation	C	A	p.E1006*
UCEC	TCGA-AP-A056-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748582	43748582	Nonsense_Mutation	C	A	p.E742*
UCEC	TCGA-D1-A103-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3	chr15	43772056:43772215:43773092:43773220:43783866:43783951,	43773093	43773220	43773165	43773165	Nonsense_Mutation	C	A	p.E143*
UCEC	TCGA-BS-A0UV-01	STRC	ENST00000471703.1,ENST00000448437.2	chr15	43901473:43901532:43902509:43903513:43903696:43903735,	43902510	43903513	43902548	43902548	Nonsense_Mutation	G	A	p.R1154*
UCEC	TCGA-BS-A0UV-01	STRC	ENST00000440125.1,ENST00000541030.1	chr15	43901473:43901532:43902509:43902584:43903696:43903735,	43902510	43902584	43902548	43902548	Nonsense_Mutation	G	A	p.R1154*
UCEC	TCGA-BS-A0UF-01	STRC	ENST00000471703.1,ENST00000448437.2	chr15	43901473:43901532:43902509:43903513:43903696:43903735,	43902510	43903513	43902548	43902548	Nonsense_Mutation	G	A	p.R1154*
UCEC	TCGA-BS-A0UF-01	STRC	ENST00000440125.1,ENST00000541030.1	chr15	43901473:43901532:43902509:43902584:43903696:43903735,	43902510	43902584	43902548	43902548	Nonsense_Mutation	G	A	p.R1154*
UCEC	TCGA-B5-A11E-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44060720:44060795:44061715:44061844:44062447:44062527,	44061716	44061844	44061728	44061728	Nonsense_Mutation	G	T	p.E384*
UCEC	TCGA-B5-A0JY-01	WDR76	ENST00000381246.2,ENST00000263795.6,ENST00000452115.1	chr15	44131802:44131926:44134612:44134714:44134825:44134869,	44134613	44134714	44134637	44134637	Nonsense_Mutation	G	T	p.E253*
UCEC	TCGA-B5-A11E-01	CASC4	ENST00000299957.6	chr15	44673061:44673174:44695084:44695252:44705533:44705634,	44695085	44695252	44695087	44695087	Nonsense_Mutation	C	T	p.R359*
UCEC	TCGA-D1-A167-01	CASC4	ENST00000561305.1	chr15	44695248:44695252:44705533:44705634:44706711:44706959,	44705534	44705634	44705545	44705545	Nonsense_Mutation	C	T	p.R418*
UCEC	TCGA-B5-A0JY-01	B2M	ENST00000557901.1,ENST00000559907.1,ENST00000558401.1,ENST00000349264.6,ENST00000561139.1,ENST00000561424.1	chr15	45007743:45007899:45008526:45008554:45009804:45009820,	45008527	45008554	45008529	45008529	Nonsense_Mutation	C	T	p.R117*
UCEC	TCGA-AX-A0J1-01	MYEF2	ENST00000267836.6,ENST00000324324.7,ENST00000560513.1	chr15	48444070:48444139:48444430:48444481:48445988:48446090,	48444431	48444481	48444476	48444476	Nonsense_Mutation	C	A	p.G365*
UCEC	TCGA-AP-A0LM-01	SHC4	ENST00000332408.4,ENST00000537958.1,ENST00000396535.3	chr15	49117975:49118323:49126965:49127219:49135605:49135785,	49126966	49127219	49127130	49127130	Nonsense_Mutation	C	A	p.E525*
UCEC	TCGA-D1-A17Q-01	SHC4	ENST00000332408.4,ENST00000537958.1,ENST00000396535.3	chr15	49135605:49135785:49143384:49143445:49148149:49148321,	49143385	49143445	49143403	49143403	Nonsense_Mutation	C	A	p.E429*
UCEC	TCGA-D1-A17Q-01	DTWD1	ENST00000559164.1	chr15	49913295:49913319:49917309:49917628:49924355:49924374,	49917310	49917628	49917404	49917404	Nonsense_Mutation	G	T	p.E14*
UCEC	TCGA-BS-A0UV-01	ATP8B4	ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1	chr15	50215575:50215691:50223315:50223504:50226213:50226379,	50223316	50223504	50223394	50223394	Nonsense_Mutation	C	A	p.E522*
UCEC	TCGA-AX-A05Z-01	ATP8B4	ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1	chr15	50215575:50215691:50223315:50223504:50226213:50226379,	50223316	50223504	50223502	50223502	Nonsense_Mutation	C	A	p.E486*
UCEC	TCGA-AP-A059-01	HDC	ENST00000559816.1,ENST00000267845.3	chr15	50535339:50535441:50540441:50540540:50544626:50544717,	50540442	50540540	50540519	50540519	Nonsense_Mutation	G	A	p.R355*
UCEC	TCGA-B5-A0JY-01	USP8	ENST00000561211.1	chr15	50716690:50716711:50731205:50731374:50741596:50741637,	50731206	50731374	50731298	50731298	Nonsense_Mutation	G	T	p.E10*
UCEC	TCGA-BS-A0UV-01	USP8	ENST00000433963.1,ENST00000425032.3,ENST00000419830.2,ENST00000396444.3,ENST00000307179.4	chr15	50786266:50786477:50788044:50788281:50789285:50789428,	50788045	50788281	50788072	50788072	Nonsense_Mutation	G	T	p.E896*
UCEC	TCGA-AX-A0J0-01	AP4E1	ENST00000261842.5,ENST00000560508.1,ENST00000561441.1	chr15	51223001:51223168:51226820:51226894:51233638:51233761,	51226821	51226894	51226828	51226828	Nonsense_Mutation	G	T	p.E293*
UCEC	TCGA-AX-A0J0-01	AP4E1	ENST00000558439.1	chr15	51223001:51223168:51226732:51226894:51233638:51233761,	51226733	51226894	51226828	51226828	Nonsense_Mutation	G	T	p.E293*
UCEC	TCGA-AX-A0J0-01	WDR72	ENST00000557913.1,ENST00000560036.1,ENST00000396328.1,ENST00000360509.5,ENST00000559418.1	chr15	54003532:54003678:54004968:54005088:54006630:54006704,	54004969	54005088	54005025	54005025	Nonsense_Mutation	G	A	p.R219*
UCEC	TCGA-BS-A0UV-01	WDR72	ENST00000557913.1,ENST00000560036.1,ENST00000396328.1,ENST00000360509.5,ENST00000559418.1	chr15	54003532:54003678:54004968:54005088:54006630:54006704,	54004969	54005088	54005064	54005064	Nonsense_Mutation	C	A	p.E206*
UCEC	TCGA-B5-A11E-01	UNC13C	ENST00000537900.1	chr15	54305100:54308083:54435214:54435237:54435816:54435881,	54435215	54435237	54435232	54435232	Nonsense_Mutation	G	T	p.E1001*
UCEC	TCGA-AP-A0LM-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652803	55652803	Nonsense_Mutation	G	A	p.R390*
UCEC	TCGA-BS-A0UV-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652974	55652974	Nonsense_Mutation	C	A	p.E333*
UCEC	TCGA-BS-A0UF-01	CCPG1	ENST00000425574.3,ENST00000310958.6,ENST00000442196.3,ENST00000569205.1,ENST00000568372.1	chr15	55653037:55653142:55657385:55657507:55663990:55664228,	55657386	55657507	55657460	55657460	Nonsense_Mutation	C	A	p.E252*
UCEC	TCGA-AX-A0J0-01	NEDD4	ENST00000506154.1,ENST00000338963.2,ENST00000435532.3,ENST00000508871.1,ENST00000508342.1,ENST00000503468.1	chr15	56130304:56130378:56130706:56130802:56132644:56132715,	56130707	56130802	56130751	56130751	Nonsense_Mutation	C	A	p.E1042*
UCEC	TCGA-BS-A0UV-01	TEX9	ENST00000537232.1	chr15	56657643:56657675:56657776:56658091:56665638:56665702,	56657777	56658091	56657819	56657819	Nonsense_Mutation	C	T	p.Q24*
UCEC	TCGA-BS-A0UV-01	TEX9	ENST00000352903.2,ENST00000561221.2	chr15	56657643:56657675:56657776:56657868:56665638:56665702,	56657777	56657868	56657819	56657819	Nonsense_Mutation	C	T	p.Q24*
UCEC	TCGA-AX-A0J0-01	MNS1	ENST00000260453.3	chr15	56739038:56739141:56748591:56748719:56756223:56756445,	56748592	56748719	56748599	56748599	Nonsense_Mutation	C	A	p.E116*
UCEC	TCGA-AP-A0LM-01	TCF12	ENST00000438423.2,ENST00000559609.1,ENST00000561420.1,ENST00000543579.1,ENST00000559703.1,ENST00000452095.2,ENST00000558210.1,ENST00000333725.5	chr15	57543547:57543621:57544618:57544690:57545459:57545666,	57544619	57544690	57544625	57544625	Nonsense_Mutation	C	T	p.R399*
UCEC	TCGA-AP-A056-01	ALDH1A2	ENST00000561070.1,ENST00000347587.3,ENST00000537372.1,ENST00000249750.4,ENST00000558231.1,ENST00000430119.2,ENST00000559517.1	chr15	58287287:58287337:58302846:58302976:58306055:58306192,	58302847	58302976	58302898	58302898	Nonsense_Mutation	G	A	p.R148*
UCEC	TCGA-AX-A0J1-01	SLTM	ENST00000493062.1,ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1,ENST00000560494.1	chr15	59172178:59172306:59175824:59175985:59179173:59179206,	59175825	59175985	59175970	59175970	Nonsense_Mutation	G	A	p.R951*
UCEC	TCGA-B5-A11E-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182632	59182632	Nonsense_Mutation	G	A	p.R643*
UCEC	TCGA-AP-A056-01	SLTM	ENST00000249736.7,ENST00000536328.1,ENST00000559880.1,ENST00000380516.2,ENST00000557950.1,ENST00000557924.1,ENST00000558756.1	chr15	59204761:59204809:59205697:59205895:59209133:59209198,	59205698	59205895	59205829	59205829	Nonsense_Mutation	C	A	p.E128*
UCEC	TCGA-AX-A0J0-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323277	59323277	Nonsense_Mutation	G	T	p.E86*
UCEC	TCGA-BS-A0UV-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323499	59323499	Nonsense_Mutation	G	T	p.E160*
UCEC	TCGA-BS-A0UF-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000559077.1,ENST00000557998.1,ENST00000348370.4,ENST00000561186.1	chr15	59376327:59376453:59377857:59377984:59381865:59381895,	59377858	59377984	59377946	59377946	Nonsense_Mutation	C	T	p.R838*
UCEC	TCGA-AX-A0J0-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62214595:62214961:62217654:62217747:62219289:62219519,	62217655	62217747	62217669	62217669	Nonsense_Mutation	C	A	p.E2199*
UCEC	TCGA-D1-A17Q-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62219289:62219519:62221699:62221947:62223288:62223458,	62221700	62221947	62221754	62221754	Nonsense_Mutation	C	A	p.E2078*
UCEC	TCGA-AX-A05Z-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62219289:62219519:62221699:62221947:62223288:62223458,	62221700	62221947	62221754	62221754	Nonsense_Mutation	C	A	p.E2078*
UCEC	TCGA-D1-A103-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62223288:62223458:62226417:62226530:62228795:62228949,	62226418	62226530	62226459	62226459	Nonsense_Mutation	C	A	p.E1943*
UCEC	TCGA-BS-A0UF-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62241641:62241804:62242556:62242616:62243143:62243223,	62242557	62242616	62242598	62242598	Nonsense_Mutation	C	A	p.E1519*
UCEC	TCGA-D1-A16F-01	HERC1	ENST00000443617.2,ENST00000560519.1	chr15	64026922:64027048:64039116:64039282:64039922:64040057,	64039117	64039282	64039185	64039185	Nonsense_Mutation	G	A	p.Q818*
UCEC	TCGA-AP-A056-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966761	64966761	Nonsense_Mutation	C	T	p.R570*
UCEC	TCGA-D1-A167-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64968078	64968078	Nonsense_Mutation	C	T	p.Q1009*
UCEC	TCGA-AP-A0LM-01	CLPX	ENST00000558958.1,ENST00000300107.3,ENST00000559152.1	chr15	65454941:65454983:65456366:65456526:65458968:65459123,	65456367	65456526	65456367	65456367	Nonsense_Mutation	C	A	p.E225*
UCEC	TCGA-AX-A05Z-01	DPP8	ENST00000300141.6,ENST00000339244.5,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6	chr15	65780027:65780156:65782526:65782637:65790201:65790370,	65782527	65782637	65782575	65782575	Nonsense_Mutation	C	A	p.E276*
UCEC	TCGA-D1-A17Q-01	DPP8	ENST00000300141.6,ENST00000339244.5,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6,ENST00000558529.1	chr15	65790288:65790370:65792943:65793117:65799580:65799693,	65792944	65793117	65793069	65793069	Nonsense_Mutation	C	A	p.E157*
UCEC	TCGA-D1-A17Q-01	DENND4A	ENST00000443035.3,ENST00000564674.1,ENST00000431932.2	chr15	65993388:65993530:65994099:65994228:65994642:65994849,	65994100	65994228	65994168	65994168	Nonsense_Mutation	G	A	p.R831*
UCEC	TCGA-D1-A17F-01	DIS3L	ENST00000530537.1,ENST00000319194.5,ENST00000319212.4	chr15	66615830:66615923:66618168:66618702:66621307:66621462,	66618169	66618702	66618428	66618428	Nonsense_Mutation	C	T	p.R560*
UCEC	TCGA-BS-A0UV-01	TIPIN	ENST00000562124.1,ENST00000261881.4,ENST00000367709.4,ENST00000566524.1	chr15	66629318:66629519:66633487:66633694:66641397:66641461,	66633488	66633694	66633692	66633692	Nonsense_Mutation	C	A	p.E160*
UCEC	TCGA-D1-A17Q-01	TIPIN	ENST00000562124.1,ENST00000261881.4,ENST00000367709.4,ENST00000566524.1	chr15	66633487:66633694:66641397:66641461:66641652:66641775,	66641398	66641461	66641443	66641443	Nonsense_Mutation	G	A	p.R144*
UCEC	TCGA-D1-A103-01	SKOR1	ENST00000554240.1	chr15	68115894:68115998:68118273:68120482:68121516:68121607,	68118274	68120482	68118364	68118364	Nonsense_Mutation	C	A	p.Y57*
UCEC	TCGA-B5-A0JY-01	KIF23	ENST00000260363.4	chr15	69732646:69732826:69737128:69737380:69738347:69738430,69733106:69733418:69737128:69737380:69738347:69738430,	69737129	69737380	69737171	69737171	Nonsense_Mutation	C	T	p.R808*
UCEC	TCGA-B5-A0JY-01	KIF23	ENST00000395392.2	chr15	69733106:69733418:69737149:69737380:69738347:69738430,	69737150	69737380	69737171	69737171	Nonsense_Mutation	C	T	p.R808*
UCEC	TCGA-B5-A11N-01	LRRC49	ENST00000559685.1,ENST00000559069.1	chr15	71272439:71272523:71276432:71276596:71300717:71300777,71256123:71256271:71276432:71276596:71300717:71300777,	71276433	71276596	71276466	71276466	Nonsense_Mutation	C	T	p.R347*
UCEC	TCGA-BS-A0UV-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190136	72190136	Nonsense_Mutation	C	A	p.E1570*
UCEC	TCGA-AP-A059-01	HEXA	ENST00000567159.1,ENST00000567411.1,ENST00000268097.5,ENST00000566304.1	chr15	72637799:72637891:72638575:72638666:72638867:72639051,	72638576	72638666	72638616	72638616	Nonsense_Mutation	C	A	p.G461*
UCEC	TCGA-AX-A05Z-01	BBS4	ENST00000569338.1,ENST00000268057.4,ENST00000539603.1,ENST00000569440.1,ENST00000565160.1,ENST00000567279.1,ENST00000564239.1,ENST00000566938.1,ENST00000566400.1,ENST00000566829.1,ENST00000562084.1,ENST00000563600.1,ENST00000542334.1,ENST00000395205.2	chr15	73004584:73004648:73007631:73007743:73009118:73009191,	73007632	73007743	73007664	73007664	Nonsense_Mutation	G	T	p.E85*
UCEC	TCGA-AP-A056-01	NEO1	ENST00000261908.6,ENST00000560262.1,ENST00000560328.1,ENST00000339362.5,ENST00000558964.1	chr15	73547057:73547170:73551106:73551217:73552611:73552806,	73551107	73551217	73551136	73551136	Nonsense_Mutation	C	T	p.R708*
UCEC	TCGA-BS-A0UV-01	NEO1	ENST00000560262.1	chr15	73581486:73581579:73590688:73590952:73593661:73593798,	73590689	73590952	73590697	73590697	Nonsense_Mutation	C	T	p.R1304*
UCEC	TCGA-AP-A059-01	PML	ENST00000268058.3,ENST00000435786.2,ENST00000566068.1,ENST00000268059.6,ENST00000395135.3,ENST00000569477.1	chr15	74317220:74317268:74325496:74325755:74326818:74326871,74324912:74325056:74325496:74325755:74326818:74326871,	74325497	74325755	74325572	74325572	Nonsense_Mutation	G	T	p.E492*
UCEC	TCGA-AP-A059-01	PML	ENST00000569965.1,ENST00000436891.3	chr15	74317220:74317268:74325496:74325763:74326818:74326871,74324912:74325056:74325496:74325763:74326818:74326871,	74325497	74325763	74325572	74325572	Nonsense_Mutation	G	T	p.E492*
UCEC	TCGA-D1-A16X-01	CYP11A1	ENST00000419019.2,ENST00000566674.1,ENST00000268053.6,ENST00000541301.1,ENST00000358632.4,ENST00000435365.1	chr15	74632075:74632094:74635317:74635478:74636129:74636333,	74635318	74635478	74635344	74635344	Nonsense_Mutation	C	A	p.E322*
UCEC	TCGA-B5-A0JY-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75684582:75685156:75687020:75687204:75688598:75688837,	75687021	75687204	75687179	75687179	Nonsense_Mutation	G	A	p.R707*
UCEC	TCGA-AX-A05Z-01	UBE2Q2	ENST00000338677.4,ENST00000426727.2	chr15	76165768:76165909:76175706:76175765:76189335:76189402,76171438:76171529:76175706:76175765:76191767:76191835,	76175707	76175765	76175737	76175737	Nonsense_Mutation	C	T	p.R286*
UCEC	TCGA-AP-A056-01	UBE2Q2	ENST00000563966.1,ENST00000267938.4,ENST00000561851.1,ENST00000569423.1	chr15	76182775:76182824:76183259:76183355:76189335:76189402,	76183260	76183355	76183284	76183284	Nonsense_Mutation	G	T	p.E320*
UCEC	TCGA-AP-A051-01	SCAPER	ENST00000324767.7,ENST00000565507.1,ENST00000538941.2,ENST00000565970.1,ENST00000564590.1,ENST00000563290.1,ENST00000303521.6	chr15	77025569:77025725:77046148:77046289:77057301:77057413,	77046149	77046289	77046262	77046262	Nonsense_Mutation	C	A	p.E584*
UCEC	TCGA-AX-A05Z-01	CIB2	ENST00000559645.1	chr15	78398195:78398276:78401576:78401851:78416046:78416081,	78401577	78401851	78401709	78401709	Nonsense_Mutation	C	A	p.E72*
UCEC	TCGA-AX-A05Z-01	CIB2	ENST00000557917.1	chr15	78398195:78398276:78401576:78401724:78423506:78423567,78398195:78398276:78401576:78401724:78416046:78416081,	78401577	78401724	78401709	78401709	Nonsense_Mutation	C	A	p.E72*
UCEC	TCGA-AP-A059-01	MORF4L1	ENST00000558746.1,ENST00000559619.1,ENST00000558893.1,ENST00000558522.1,ENST00000557961.1,ENST00000426013.2,ENST00000331268.5,ENST00000561171.1,ENST00000559258.1	chr15	79165346:79165560:79170554:79170601:79172853:79172921,79165384:79165399:79170554:79170601:79172853:79172921,	79170555	79170601	79170560	79170560	Nonsense_Mutation	C	T	p.R16*
UCEC	TCGA-AX-A05Z-01	IL16	ENST00000560115.1,ENST00000394660.2,ENST00000559388.1,ENST00000558332.1	chr15	81595889:81595991:81598248:81598507:81598763:81598867,	81598249	81598507	81598384	81598384	Nonsense_Mutation	C	T	p.R1186*
UCEC	TCGA-D1-A103-01	ALPK3	ENST00000258888.5	chr15	85403267:85403303:85405865:85406146:85406782:85406871,	85405866	85406146	85405949	85405949	Nonsense_Mutation	C	T	p.R1607*
UCEC	TCGA-AP-A0LM-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000561024.1,ENST00000557957.1,ENST00000559742.1	chr15	85664027:85664245:85666291:85666424:85669437:85669605,	85666292	85666424	85666344	85666344	Nonsense_Mutation	G	T	p.E669*
UCEC	TCGA-AX-A0J0-01	AKAP13	ENST00000394518.2,ENST00000361243.2,ENST00000559362.1	chr15	86064658:86064806:86076814:86077111:86087002:86087186,	86076815	86077111	86076892	86076892	Nonsense_Mutation	G	T	p.E87*
UCEC	TCGA-D1-A16Y-01	MRPS11	ENST00000559323.1,ENST00000353598.6,ENST00000325844.4,ENST00000560708.1,ENST00000557974.1,ENST00000558406.1	chr15	89018402:89018470:89020219:89020285:89021102:89021135,	89020220	89020285	89020250	89020250	Nonsense_Mutation	C	T	p.R148*
UCEC	TCGA-BS-A0UF-01	RHCG	ENST00000560081.1,ENST00000544600.1,ENST00000268122.4	chr15	90023491:90023639:90026297:90026448:90030029:90030216,	90026298	90026448	90026324	90026324	Nonsense_Mutation	C	A	p.E166*
UCEC	TCGA-B5-A11E-01	CIB1	ENST00000328649.6	chr15	90774326:90774445:90774588:90774739:90775450:90775559,	90774589	90774739	90774721	90774721	Nonsense_Mutation	G	A	p.R72*
UCEC	TCGA-AP-A0LM-01	IQGAP1	ENST00000559674.1,ENST00000560738.1,ENST00000268182.5,ENST00000561461.1	chr15	91030726:91030814:91034564:91034777:91035776:91035848,	91034565	91034777	91034718	91034718	Nonsense_Mutation	G	T	p.E1468*
UCEC	TCGA-D1-A103-01	PRC1	ENST00000560914.1,ENST00000394249.3,ENST00000442656.2,ENST00000361188.5,ENST00000559828.1,ENST00000361919.3	chr15	91517814:91517961:91519905:91520001:91522387:91522524,	91519906	91520001	91519938	91519938	Nonsense_Mutation	G	A	p.Q391*
UCEC	TCGA-AP-A051-01	VPS33B	ENST00000333371.3,ENST00000535906.1,ENST00000574755.1,ENST00000535843.1	chr15	91549230:91549289:91549601:91549675:91549881:91549959,	91549602	91549675	91549655	91549655	Nonsense_Mutation	C	A	p.E267*
UCEC	TCGA-AP-A059-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670118	99670118	Nonsense_Mutation	C	T	p.Q518*
UCEC	TCGA-AP-A059-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670984	99670984	Nonsense_Mutation	C	T	p.Q806*
UCEC	TCGA-BS-A0UV-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99671320	99671320	Nonsense_Mutation	G	T	p.E918*
UCEC	TCGA-BS-A0UV-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99671341	99671341	Nonsense_Mutation	G	T	p.E925*
UCEC	TCGA-AP-A0LM-01	TTC23	ENST00000394130.1,ENST00000394135.3,ENST00000394132.2,ENST00000558663.1,ENST00000558613.1,ENST00000394129.2,ENST00000494567.1,ENST00000262074.4,ENST00000459771.1,ENST00000394136.1	chr15	99701944:99702072:99715254:99715360:99740123:99740301,	99715255	99715360	99715284	99715284	Nonsense_Mutation	G	T	p.C14*
UCEC	TCGA-AP-A056-01	PCSK6	ENST00000348070.1,ENST00000561177.1,ENST00000358417.3,ENST00000398185.2,ENST00000560921.1	chr15	101847495:101847530:101853580:101853710:101858523:101858627,	101853581	101853710	101853585	101853585	Nonsense_Mutation	G	A	p.R898*
UCEC	TCGA-B5-A0JY-01	PCSK6	ENST00000561444.1,ENST00000348070.1,ENST00000331826.7,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000558716.1,ENST00000560921.1,ENST00000344273.2,ENST00000560271.1,ENST00000398181.2,ENST00000559678.1	chr15	101910539:101910728:101922296:101922414:101924526:101924630,	101922297	101922414	101922356	101922356	Nonsense_Mutation	C	A	p.E491*
UCEC	TCGA-B5-A11R-01	IFT140	ENST00000439987.2,ENST00000426508.2	chr16	1637933:1638025:1639605:1639781:1642176:1642319,	1639606	1639781	1639743	1639743	Nonsense_Mutation	G	A	p.Q225*
UCEC	TCGA-D1-A167-01	MSRB1	ENST00000361871.3	chr16	1989095:1989144:1990778:1990893:1991257:1991406,	1990779	1990893	1990821	1990821	Nonsense_Mutation	G	A	p.R93*
UCEC	TCGA-B5-A11E-01	KCTD5	ENST00000301738.4	chr16	2745935:2746044:2747906:2747998:2749821:2749917,	2747907	2747998	2747978	2747978	Nonsense_Mutation	C	T	p.R145*
UCEC	TCGA-BS-A0UV-01	ZNF200	ENST00000575948.1,ENST00000414144.2	chr16	3282832:3282921:3283505:3283836:3285111:3285360,3282832:3282921:3283505:3283836:3284986:3285070,	3283506	3283836	3283659	3283659	Nonsense_Mutation	G	A	p.R33*
UCEC	TCGA-D1-A17Q-01	ZNF200	ENST00000575948.1,ENST00000414144.2	chr16	3282832:3282921:3283505:3283836:3285111:3285360,3282832:3282921:3283505:3283836:3284986:3285070,	3283506	3283836	3283659	3283659	Nonsense_Mutation	G	A	p.R33*
UCEC	TCGA-AP-A059-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789608	3789608	Nonsense_Mutation	G	T	p.Y1417*
UCEC	TCGA-AX-A0J1-01	CORO7	ENST00000575531.1,ENST00000539968.1,ENST00000537233.2,ENST00000570779.1,ENST00000571227.1,ENST00000251166.4,ENST00000574025.1	chr16	4407168:4407260:4407968:4408104:4408367:4408484,	4407969	4408104	4408026	4408026	Nonsense_Mutation	G	A	p.Q846*
UCEC	TCGA-AX-A0J0-01	CORO7	ENST00000575531.1,ENST00000539968.1,ENST00000537233.2,ENST00000570779.1,ENST00000571227.1,ENST00000251166.4,ENST00000574025.1	chr16	4407168:4407260:4407968:4408104:4408367:4408484,	4407969	4408104	4408101	4408101	Nonsense_Mutation	C	A	p.E821*
UCEC	TCGA-BS-A0UV-01	NMRAL1	ENST00000574425.1,ENST00000404295.3,ENST00000283429.6,ENST00000574733.1	chr16	4516211:4516403:4519227:4519466:4524093:4524167,	4519228	4519466	4519410	4519410	Nonsense_Mutation	G	A	p.R33*
UCEC	TCGA-D1-A103-01	C16orf71	ENST00000586724.1,ENST00000299320.5,ENST00000586256.1	chr16	4786464:4786644:4787800:4787947:4790153:4790346,	4787801	4787947	4787837	4787837	Nonsense_Mutation	C	T	p.R56*
UCEC	TCGA-AP-A059-01	C16orf89	ENST00000315997.5,ENST00000422873.1,ENST00000350219.4,ENST00000472572.3,ENST00000592343.1	chr16	5097878:5097965:5105246:5105351:5106053:5106159,	5105247	5105351	5105260	5105260	Nonsense_Mutation	G	T	p.C323*
UCEC	TCGA-AP-A051-01	C16orf89	ENST00000474471.3,ENST00000315997.5,ENST00000422873.1,ENST00000350219.4,ENST00000472572.3	chr16	5108493:5108611:5110286:5110437:5112425:5112570,	5110287	5110437	5110303	5110303	Nonsense_Mutation	G	A	p.Q203*
UCEC	TCGA-BS-A0UV-01	ABAT	ENST00000425191.2,ENST00000567812.1,ENST00000396600.2,ENST00000268251.8,ENST00000566590.1	chr16	8870200:8870347:8873335:8873447:8875165:8875388,	8873336	8873447	8873372	8873372	Nonsense_Mutation	C	T	p.R436*
UCEC	TCGA-BS-A0UV-01	USP7	ENST00000563961.1,ENST00000567692.1,ENST00000344836.4,ENST00000565455.1,ENST00000563085.1,ENST00000535863.1,ENST00000381886.4	chr16	8993031:8993045:8993460:8993614:8994386:8994487,	8993461	8993614	8993562	8993562	Nonsense_Mutation	G	A	p.R788*
UCEC	TCGA-AX-A0J0-01	TXNDC11	ENST00000283033.5,ENST00000356957.3	chr16	11815432:11815526:11824500:11824630:11827837:11827855,	11824501	11824630	11824588	11824588	Nonsense_Mutation	G	T	p.Y204*
UCEC	TCGA-BS-A0UV-01	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000420015.2	chr16	14693791:14693817:14698002:14698083:14700340:14700383,	14698003	14698083	14698008	14698008	Nonsense_Mutation	C	A	p.E260*
UCEC	TCGA-B5-A11W-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16043433:16043656:16101672:16101849:16103632:16103758,	16101673	16101849	16101799	16101799	Nonsense_Mutation	C	T	p.R59*
UCEC	TCGA-B5-A0JY-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16103712:16103758:16108347:16108485:16110352:16110478,	16108348	16108485	16108483	16108483	Nonsense_Mutation	G	T	p.E163*
UCEC	TCGA-AX-A05Z-01	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2,ENST00000577103.1	chr16	16297266:16297470:16302584:16302716:16306041:16306103,	16302585	16302716	16302655	16302655	Nonsense_Mutation	C	A	p.E242*
UCEC	TCGA-B5-A0JY-01	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2,ENST00000577103.1	chr16	16297266:16297470:16302584:16302716:16306041:16306103,	16302585	16302716	16302655	16302655	Nonsense_Mutation	C	A	p.E242*
UCEC	TCGA-D1-A103-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547973	19547973	Nonsense_Mutation	C	T	p.R328*
UCEC	TCGA-B5-A0JY-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548204	19548204	Nonsense_Mutation	G	T	p.E405*
UCEC	TCGA-AX-A05Z-01	IQCK	ENST00000320394.6,ENST00000541926.1,ENST00000564186.1,ENST00000564955.1,ENST00000433597.2,ENST00000568126.1	chr16	19745019:19745149:19746674:19746772:19800159:19800244,19745019:19745149:19746674:19746772:19775169:19775222,	19746675	19746772	19746686	19746686	Nonsense_Mutation	G	T	p.E130*
UCEC	TCGA-D1-A17Q-01	IQCK	ENST00000320394.6,ENST00000541926.1,ENST00000564186.1,ENST00000564955.1,ENST00000433597.2,ENST00000568126.1	chr16	19745019:19745149:19746674:19746772:19800159:19800244,19745019:19745149:19746674:19746772:19775169:19775222,	19746675	19746772	19746686	19746686	Nonsense_Mutation	G	T	p.E130*
UCEC	TCGA-AX-A05Z-01	IQCK	ENST00000568126.1	chr16	19745019:19745149:19775169:19775434:19800159:19800244,19746735:19746772:19775169:19775434:19800159:19800244,	19775170	19775434	19775391	19775391	Nonsense_Mutation	G	T	p.E188*
UCEC	TCGA-AX-A05Z-01	IQCK	ENST00000320394.6,ENST00000561839.1,ENST00000564186.1,ENST00000561935.1,ENST00000564955.1,ENST00000433597.2,ENST00000562762.1	chr16	19775169:19775222:19775356:19775434:19800159:19800244,	19775357	19775434	19775391	19775391	Nonsense_Mutation	G	T	p.E188*
UCEC	TCGA-AX-A0J0-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331754	20331754	Nonsense_Mutation	C	A	p.E233*
UCEC	TCGA-AP-A0LM-01	ACSM5	ENST00000331849.4	chr16	20430549:20430757:20432579:20432723:20435237:20435391,	20432580	20432723	20432620	20432620	Nonsense_Mutation	C	T	p.R222*
UCEC	TCGA-B5-A0JY-01	ACSM2B	ENST00000565232.1,ENST00000329697.6,ENST00000569364.1,ENST00000567288.1,ENST00000563943.1,ENST00000565322.1,ENST00000567001.1	chr16	20557721:20557796:20559383:20559507:20559715:20559795,	20559384	20559507	20559407	20559407	Nonsense_Mutation	C	A	p.E359*
UCEC	TCGA-BS-A0UF-01	ACSM2B	ENST00000565232.1,ENST00000566384.1,ENST00000569344.1,ENST00000567001.1	chr16	20570629:20570769:20575990:20576175:20587528:20587599,20570629:20570769:20575990:20576175:20586743:20586778,	20575991	20576175	20576007	20576007	Nonsense_Mutation	C	T	p.W54*
UCEC	TCGA-BS-A0UV-01	THUMPD1	ENST00000396083.2,ENST00000431224.2	chr16	20749029:20749278:20750218:20750393:20752830:20753118,	20750219	20750393	20750321	20750321	Nonsense_Mutation	C	A	p.E102*
UCEC	TCGA-B5-A0JY-01	ERI2	ENST00000300005.3	chr16	20800800:20800879:20802171:20802254:20810584:20810673,	20802172	20802254	20802179	20802179	Nonsense_Mutation	C	A	p.E270*
UCEC	TCGA-B5-A11N-01	ACSM3	ENST00000562251.1,ENST00000289416.5,ENST00000567387.1,ENST00000450120.2	chr16	20803557:20803657:20807691:20807811:20808207:20808251,	20807692	20807811	20807743	20807743	Nonsense_Mutation	G	T	p.E536*
UCEC	TCGA-AX-A0J0-01	DNAH3	ENST00000261383.3,ENST00000396036.1,ENST00000415178.1	chr16	21133265:21133445:21136495:21136691:21139007:21139133,	21136496	21136691	21136606	21136606	Nonsense_Mutation	G	A	p.R432*
UCEC	TCGA-AX-A05Z-01	ZP2	ENST00000574091.1,ENST00000574002.1,ENST00000219593.4	chr16	21210099:21210183:21210890:21210987:21211063:21211199,	21210891	21210987	21210894	21210894	Nonsense_Mutation	G	A	p.R642*
UCEC	TCGA-B5-A0JY-01	VWA3A	ENST00000566668.1,ENST00000568328.1,ENST00000389397.4,ENST00000389398.5	chr16	22103862:22103972:22108179:22108266:22111514:22111639,22103862:22103972:22108179:22108266:22108892:22109016,	22108180	22108266	22108241	22108241	Nonsense_Mutation	G	T	p.E26*
UCEC	TCGA-AP-A059-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000389398.5	chr16	22145688:22145759:22149680:22149833:22151474:22151565,	22149681	22149833	22149729	22149729	Nonsense_Mutation	G	T	p.G730*
UCEC	TCGA-D1-A16X-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000389398.5	chr16	22145688:22145759:22149680:22149833:22151474:22151565,	22149681	22149833	22149750	22149750	Nonsense_Mutation	G	T	p.E737*
UCEC	TCGA-B5-A11H-01	NDUFAB1	ENST00000484769.1	chr16	23596656:23596744:23598517:23598640:23607443:23607598,23596656:23596744:23598517:23598640:23602206:23602474,23596656:23596744:23598517:23598640:23606749:23606959,	23598518	23598640	23598622	23598622	Nonsense_Mutation	G	A	p.Q63*
UCEC	TCGA-B5-A0JY-01	ERN2	ENST00000562562.1,ENST00000457008.2,ENST00000256797.4	chr16	23716203:23716468:23717650:23717752:23718074:23718175,	23717651	23717752	23717685	23717685	Nonsense_Mutation	G	T	p.Y233*
UCEC	TCGA-B5-A0JY-01	TNRC6A	ENST00000562829.1	chr16	24741033:24741167:24741573:24741621:24762046:24762134,24741033:24741167:24741573:24741621:24788253:24788348,	24741574	24741621	24741605	24741605	Nonsense_Mutation	G	T	p.E13*
UCEC	TCGA-D1-A103-01	TNRC6A	ENST00000432286.2,ENST00000491718.1,ENST00000315183.7,ENST00000395799.3,ENST00000450465.2	chr16	24820691:24820802:24826467:24826626:24828136:24828277,	24826468	24826626	24826566	24826566	Nonsense_Mutation	G	T	p.G1591*
UCEC	TCGA-AP-A059-01	IL4R	ENST00000380922.3,ENST00000568746.1,ENST00000395762.2,ENST00000449195.1,ENST00000543915.2,ENST00000170630.2	chr16	27356228:27356341:27357787:27357939:27363860:27364017,	27357788	27357939	27357805	27357805	Nonsense_Mutation	G	T	p.G127*
UCEC	TCGA-B5-A11O-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000545570.1,ENST00000395532.4,ENST00000359285.5,ENST00000322610.8,ENST00000569471.1,ENST00000566176.1	chr16	28880414:28880418:28880528:28880704:28883100:28883235,	28880529	28880704	28880671	28880671	Nonsense_Mutation	G	T	p.G426*
UCEC	TCGA-B5-A11O-01	SH2B1	ENST00000561629.1	chr16	28880414:28880418:28880597:28880704:28883100:28883235,	28880598	28880704	28880671	28880671	Nonsense_Mutation	G	T	p.G426*
UCEC	TCGA-AP-A051-01	BCL7C	ENST00000574418.1	chr16	30900180:30900266:30903906:30904035:30904532:30904611,	30903907	30904035	30904015	30904015	Nonsense_Mutation	C	A	p.E112*
UCEC	TCGA-D1-A160-01	BCKDK	ENST00000394950.3,ENST00000287507.3,ENST00000394951.1,ENST00000219794.6	chr16	31121730:31121820:31122008:31122082:31122411:31122540,	31122009	31122082	31122051	31122051	Nonsense_Mutation	A	T	p.K229*
UCEC	TCGA-B5-A11E-01	VPS35	ENST00000568784.2,ENST00000299138.7,ENST00000569950.1	chr16	46711226:46711310:46712854:46713068:46714582:46714765,	46712855	46713068	46712983	46712983	Nonsense_Mutation	G	A	p.Q198*
UCEC	TCGA-AX-A05Z-01	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005304	47005304	Nonsense_Mutation	G	A	p.R107*
UCEC	TCGA-AX-A05Z-01	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005304	47005304	Nonsense_Mutation	G	A	p.R107*
UCEC	TCGA-B5-A11N-01	NETO2	ENST00000303155.5,ENST00000562435.1	chr16	47117524:47117712:47143393:47143622:47156567:47156695,47120136:47120250:47143393:47143622:47156567:47156695,	47143394	47143622	47143460	47143460	Nonsense_Mutation	G	A	p.R273*
UCEC	TCGA-D1-A16X-01	NETO2	ENST00000303155.5,ENST00000562435.1	chr16	47117524:47117712:47143393:47143622:47156567:47156695,47120136:47120250:47143393:47143622:47156567:47156695,	47143394	47143622	47143460	47143460	Nonsense_Mutation	G	A	p.R273*
UCEC	TCGA-AP-A0LM-01	ABCC11	ENST00000353782.5,ENST00000569172.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48227789:48227893:48230142:48230232:48231881:48231978,	48230143	48230232	48230194	48230194	Nonsense_Mutation	C	A	p.E785*
UCEC	TCGA-AP-A051-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000567385.1,ENST00000394748.1	chr16	48256508:48256742:48258192:48258340:48261716:48261875,	48258193	48258340	48258306	48258306	Nonsense_Mutation	G	A	p.R144*
UCEC	TCGA-AP-A059-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000398510.3	chr16	53301838:53302038:53307537:53307697:53308124:53308214,	53307538	53307697	53307609	53307609	Nonsense_Mutation	C	T	p.Q1597*
UCEC	TCGA-B5-A11E-01	RBL2	ENST00000544405.2,ENST00000567964.2,ENST00000262133.6	chr16	53476569:53476770:53480953:53481018:53485614:53485743,	53480954	53481018	53480955	53480955	Nonsense_Mutation	C	T	p.R192*
UCEC	TCGA-BS-A0UV-01	RBL2	ENST00000544405.2,ENST00000561512.1,ENST00000379935.4,ENST00000544545.1,ENST00000262133.6	chr16	53495680:53495762:53496463:53496567:53498137:53498275,	53496464	53496567	53496517	53496517	Nonsense_Mutation	G	T	p.E504*
UCEC	TCGA-D1-A160-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53500969:53501081:53503827:53504097:53504294:53504575,	53503828	53504097	53503980	53503980	Nonsense_Mutation	C	T	p.Q710*
UCEC	TCGA-AP-A0LM-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53514478:53514681:53515582:53515747:53524041:53524213,	53515583	53515747	53515637	53515637	Nonsense_Mutation	C	T	p.R1047*
UCEC	TCGA-BS-A0UV-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53514478:53514681:53515582:53515747:53524041:53524213,	53515583	53515747	53515709	53515709	Nonsense_Mutation	G	T	p.E1071*
UCEC	TCGA-AP-A0LM-01	ARL2BP	ENST00000562023.1,ENST00000219204.3	chr16	57283691:57283764:57284322:57284419:57286077:57286336,	57284323	57284419	57284396	57284396	Nonsense_Mutation	G	T	p.E123*
UCEC	TCGA-AX-A0J0-01	CCDC113	ENST00000219299.4,ENST00000443128.2	chr16	58293757:58293838:58296288:58296444:58301382:58301490,	58296289	58296444	58296370	58296370	Nonsense_Mutation	G	T	p.E237*
UCEC	TCGA-BS-A0UF-01	CDH5	ENST00000341529.3,ENST00000565334.1	chr16	66426038:66426286:66429961:66430104:66431884:66432009,	66429962	66430104	66430089	66430089	Nonsense_Mutation	G	T	p.E449*
UCEC	TCGA-AP-A059-01	CMTM3	ENST00000424011.2,ENST00000566756.1,ENST00000562707.1,ENST00000565003.1,ENST00000562357.1,ENST00000563672.1,ENST00000567572.1,ENST00000361909.4	chr16	66638797:66638855:66642211:66642367:66643785:66643906,66638797:66638855:66642211:66642367:66643337:66643383,	66642212	66642367	66642238	66642238	Nonsense_Mutation	C	A	p.C58*
UCEC	TCGA-AP-A056-01	NAE1	ENST00000566663.1	chr16	66836814:66837021:66839814:66839929:66842423:66842451,	66839815	66839929	66839819	66839819	Nonsense_Mutation	C	A	p.E481*
UCEC	TCGA-AX-A0J0-01	NAE1	ENST00000569388.1	chr16	66857183:66857209:66857431:66857503:66858757:66858788,66857183:66857209:66857431:66857503:66860425:66860486,	66857432	66857503	66857470	66857470	Nonsense_Mutation	C	A	p.E95*
UCEC	TCGA-AX-A05Z-01	CDH16	ENST00000394055.3	chr16	66943888:66943996:66944162:66944339:66945084:66945218,	66944163	66944339	66944308	66944308	Nonsense_Mutation	G	T	p.Y674*
UCEC	TCGA-AX-A05Z-01	CDH16	ENST00000568698.1,ENST00000570262.1,ENST00000568632.1,ENST00000299752.4	chr16	66943888:66943996:66944162:66944405:66945084:66945218,	66944163	66944405	66944308	66944308	Nonsense_Mutation	G	T	p.Y674*
UCEC	TCGA-B5-A0JY-01	HSF4	ENST00000584272.1,ENST00000421453.1	chr16	67201104:67201125:67201363:67201502:67201726:67201820,	67201364	67201502	67201447	67201447	Nonsense_Mutation	G	T	p.E267*
UCEC	TCGA-B5-A0JY-01	HSF4	ENST00000519224.1,ENST00000522870.1,ENST00000520528.1	chr16	67201104:67201125:67201377:67201502:67201726:67201820,67201282:67201305:67201377:67201502:67201726:67201820,	67201378	67201502	67201447	67201447	Nonsense_Mutation	G	T	p.E267*
UCEC	TCGA-BG-A0M2-01	EXOC3L1	ENST00000545725.2,ENST00000563889.1	chr16	67218283:67218507:67218588:67218960:67219038:67219161,	67218589	67218960	67218648	67218648	Nonsense_Mutation	G	A	p.R590*
UCEC	TCGA-BG-A0M2-01	EXOC3L1	ENST00000564324.1,ENST00000314586.6	chr16	67218283:67218507:67218588:67218713:67218804:67218960,	67218589	67218713	67218648	67218648	Nonsense_Mutation	G	A	p.R590*
UCEC	TCGA-D1-A103-01	KCTD19	ENST00000562721.1,ENST00000304372.5,ENST00000570049.1,ENST00000569333.1,ENST00000566392.1	chr16	67337079:67337240:67338323:67338474:67354491:67354693,	67338324	67338474	67338354	67338354	Nonsense_Mutation	C	A	p.E141*
UCEC	TCGA-B5-A11N-01	KCTD19	ENST00000562721.1,ENST00000304372.5,ENST00000570049.1,ENST00000569333.1,ENST00000566392.1	chr16	67337079:67337240:67338323:67338474:67354491:67354693,	67338324	67338474	67338376	67338376	Nonsense_Mutation	C	T	p.W133*
UCEC	TCGA-BS-A0UV-01	LRRC36	ENST00000290940.7,ENST00000567723.1	chr16	67399206:67399258:67400919:67401360:67404846:67405145,67397492:67397617:67400919:67401360:67404846:67405145,	67400920	67401360	67401082	67401082	Nonsense_Mutation	C	A	p.S306*
UCEC	TCGA-AX-A0J0-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645069	67645069	Nonsense_Mutation	G	T	p.E112*
UCEC	TCGA-AX-A05Z-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645270	67645270	Nonsense_Mutation	G	T	p.E179*
UCEC	TCGA-B5-A11R-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645273	67645273	Nonsense_Mutation	C	T	p.Q180*
UCEC	TCGA-B5-A11Y-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655479	67655479	Nonsense_Mutation	C	T	p.R448*
UCEC	TCGA-A5-A0GI-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655479	67655479	Nonsense_Mutation	C	T	p.R448*
UCEC	TCGA-A5-A0GP-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655479	67655479	Nonsense_Mutation	C	T	p.R448*
UCEC	TCGA-D1-A17Q-01	TSNAXIP1	ENST00000565148.1,ENST00000568990.1,ENST00000388833.3,ENST00000561639.1	chr16	67848204:67848304:67854741:67854854:67855001:67855128,	67854742	67854854	67854847	67854847	Nonsense_Mutation	C	T	p.R31*
UCEC	TCGA-AX-A0J0-01	ESRP2	ENST00000562567.2,ENST00000251366.3,ENST00000569964.1,ENST00000564382.1,ENST00000562738.1,ENST00000473183.2,ENST00000565858.1	chr16	68267259:68267328:68267670:68267785:68267896:68268010,	68267671	68267785	68267737	68267737	Nonsense_Mutation	C	A	p.E164*
UCEC	TCGA-AX-A05Z-01	COG4	ENST00000323786.5,ENST00000526700.1,ENST00000482252.1,ENST00000564415.1,ENST00000530314.1	chr16	70531875:70531958:70534860:70534994:70542308:70542367,	70534861	70534994	70534993	70534993	Nonsense_Mutation	C	A	p.E355*
UCEC	TCGA-AP-A059-01	HYDIN	ENST00000393567.2,ENST00000448089.2,ENST00000538382.1,ENST00000321489.5,ENST00000541601.1,ENST00000537789.1,ENST00000288168.10,ENST00000538248.1,ENST00000448691.1,ENST00000393550.2	chr16	71186561:71186686:71196433:71196633:71209509:71209644,	71196434	71196633	71196561	71196561	Nonsense_Mutation	G	A	p.R197*
UCEC	TCGA-AP-A0LM-01	CALB2	ENST00000302628.4,ENST00000349553.5,ENST00000562305.1	chr16	71406080:71406132:71408647:71408737:71411569:71411650,	71408648	71408737	71408672	71408672	Nonsense_Mutation	G	T	p.E66*
UCEC	TCGA-B5-A11R-01	AP1G1	ENST00000423132.2,ENST00000565009.1,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000564155.1,ENST00000393512.3	chr16	71772844:71773005:71773136:71773244:71779046:71779173,	71773137	71773244	71773166	71773166	Nonsense_Mutation	G	C	p.S696*
UCEC	TCGA-BS-A0UF-01	AP1G1	ENST00000423132.2,ENST00000565009.1,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3	chr16	71780490:71780595:71782153:71782281:71783796:71783886,	71782154	71782281	71782173	71782173	Nonsense_Mutation	G	A	p.R539*
UCEC	TCGA-AX-A0J0-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3,ENST00000566179.1	chr16	71787735:71787790:71789921:71790062:71792710:71792824,	71789922	71790062	71790001	71790001	Nonsense_Mutation	C	A	p.E387*
UCEC	TCGA-D1-A174-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3,ENST00000566179.1	chr16	71787735:71787790:71789921:71790062:71792710:71792824,	71789922	71790062	71790016	71790016	Nonsense_Mutation	G	A	p.R382*
UCEC	TCGA-AX-A0J0-01	ZNF821	ENST00000562985.1,ENST00000563878.1,ENST00000562808.1,ENST00000566987.1	chr16	71898041:71898145:71898805:71898951:71913809:71913926,71898041:71898145:71898805:71898951:71901814:71901940,71898041:71898145:71898805:71898951:71901795:71901940,	71898806	71898951	71898859	71898859	Nonsense_Mutation	C	A	p.E45*
UCEC	TCGA-BG-A0VV-01	HPR	ENST00000561690.1,ENST00000540303.2,ENST00000356967.5,ENST00000228226.8	chr16	72108182:72108284:72109043:72109118:72110201:72110249,	72109044	72109118	72109051	72109051	Nonsense_Mutation	C	A	p.Y67*
UCEC	TCGA-BS-A0UV-01	PMFBP1	ENST00000237353.10,ENST00000537465.1,ENST00000535461.1	chr16	72184672:72184728:72188109:72188358:72198662:72198815,	72188110	72188358	72188118	72188118	Nonsense_Mutation	C	A	p.E136*
UCEC	TCGA-AP-A0LM-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827388	72827388	Nonsense_Mutation	C	A	p.E3065*
UCEC	TCGA-BS-A0TC-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827580	72827580	Nonsense_Mutation	C	A	p.E3001*
UCEC	TCGA-BS-A0UJ-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72832266	72832266	Nonsense_Mutation	G	A	p.R1439*
UCEC	TCGA-D1-A17Q-01	CMIP	ENST00000537098.3,ENST00000539778.2	chr16	81641171:81641297:81654480:81654531:81685807:81685895,	81654481	81654531	81654499	81654499	Nonsense_Mutation	C	T	p.R149*
UCEC	TCGA-BS-A0UF-01	PLCG2	ENST00000567980.1,ENST00000359376.3,ENST00000565054.1	chr16	81819547:81819787:81888048:81888192:81891867:81891961,	81888049	81888192	81888069	81888069	Nonsense_Mutation	G	T	p.E72*
UCEC	TCGA-BS-A0UF-01	CDH13	ENST00000268613.10,ENST00000569454.1,ENST00000566620.1,ENST00000539548.2	chr16	83158989:83159106:83250949:83251102:83378466:83378611,	83250950	83251102	83251040	83251040	Nonsense_Mutation	G	T	p.E192*
UCEC	TCGA-A5-A0VP-01	MAP1LC3B	ENST00000565788.1,ENST00000268607.5	chr16	87426028:87426073:87432420:87432476:87435780:87435887,	87432421	87432476	87432441	87432441	Nonsense_Mutation	C	T	p.R21*
UCEC	TCGA-B5-A11G-01	ZC3H18	ENST00000452588.2	chr16	88636885:88636974:88643517:88644134:88653007:88653092,	88643518	88644134	88643910	88643910	Nonsense_Mutation	G	T	p.E127*
UCEC	TCGA-D1-A167-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88691095:88691153:88691609:88691675:88694029:88694190,	88691610	88691675	88691668	88691668	Nonsense_Mutation	C	T	p.R701*
UCEC	TCGA-B5-A11N-01	CBFA2T3	ENST00000562719.1,ENST00000569464.1,ENST00000268679.4	chr16	88958806:88958893:88964485:88964560:88967911:88968064,	88964486	88964560	88964558	88964558	Nonsense_Mutation	G	A	p.R103*
UCEC	TCGA-AX-A05Z-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349799	89349799	Nonsense_Mutation	C	A	p.E1051*
UCEC	TCGA-BS-A0UF-01	FANCA	ENST00000561660.1,ENST00000563318.1,ENST00000389301.3,ENST00000568369.1	chr16	89816137:89816310:89824984:89825113:89828356:89828430,89818568:89818630:89824984:89825113:89828356:89828430,	89824985	89825113	89824989	89824989	Nonsense_Mutation	G	A	p.Q993*
UCEC	TCGA-AP-A0LM-01	FANCA	ENST00000389301.3,ENST00000568369.1	chr16	89828356:89828430:89831297:89831474:89833548:89833555,	89831298	89831474	89831327	89831327	Nonsense_Mutation	G	A	p.R917*
UCEC	TCGA-AP-A059-01	DEF8	ENST00000567874.1,ENST00000268676.7,ENST00000570182.1,ENST00000563795.1,ENST00000563594.1,ENST00000563848.1,ENST00000569453.1	chr16	90027338:90027503:90028144:90028272:90028419:90028531,	90028145	90028272	90028254	90028254	Nonsense_Mutation	G	A	p.W324*
UCEC	TCGA-BS-A0UV-01	VPS53	ENST00000291074.5	chr17	556565:556650:559077:559193:565048:565135,556565:556650:559077:559193:600657:600724,	559078	559193	559187	559187	Nonsense_Mutation	C	A	p.E127*
UCEC	TCGA-EY-A1GS-01	YWHAE	ENST00000264335.8,ENST00000571732.1	chr17	1248621:1248793:1257504:1257641:1268152:1268352,1248621:1248793:1257504:1257641:1264385:1264587,	1257505	1257641	1257522	1257522	Nonsense_Mutation	G	C	p.S233*
UCEC	TCGA-D1-A17Q-01	CRK	ENST00000300574.2	chr17	1326690:1326944:1339913:1340449:1359170:1359443,	1339914	1340449	1340345	1340345	Nonsense_Mutation	C	A	p.E116*
UCEC	TCGA-D1-A16X-01	TSR1	ENST00000301364.5	chr17	2236850:2237010:2237765:2238190:2238553:2238688,	2237766	2238190	2237912	2237912	Nonsense_Mutation	G	A	p.R279*
UCEC	TCGA-B5-A0JY-01	TSR1	ENST00000301364.5	chr17	2236850:2237010:2237765:2238190:2238553:2238688,	2237766	2238190	2237912	2237912	Nonsense_Mutation	G	A	p.R279*
UCEC	TCGA-D1-A17Q-01	ITGAE	ENST00000574026.2,ENST00000571185.1	chr17	3631307:3631320:3631398:3631462:3634397:3634477,	3631399	3631462	3631413	3631413	Nonsense_Mutation	C	A	p.E988*
UCEC	TCGA-BS-A0UF-01	ZMYND15	ENST00000269289.6,ENST00000573751.2,ENST00000433935.1,ENST00000574829.1,ENST00000592813.1	chr17	4645209:4645365:4645625:4645786:4646597:4646750,	4645626	4645786	4645753	4645753	Nonsense_Mutation	G	T	p.E371*
UCEC	TCGA-AP-A059-01	PLD2	ENST00000263088.6,ENST00000576864.1	chr17	4722723:4722877:4725087:4725202:4725934:4726015,	4725088	4725202	4725128	4725128	Nonsense_Mutation	C	T	p.R835*
UCEC	TCGA-D1-A17Q-01	MINK1	ENST00000571207.1,ENST00000355280.6,ENST00000574453.1,ENST00000453408.3,ENST00000572330.1,ENST00000347992.7	chr17	4797819:4797928:4798369:4798537:4798644:4798788,	4798370	4798537	4798501	4798501	Nonsense_Mutation	C	T	p.R1017*
UCEC	TCGA-AX-A0J0-01	RNF167	ENST00000262482.6,ENST00000573404.1,ENST00000571816.1,ENST00000570328.1,ENST00000572430.1,ENST00000575111.1,ENST00000576229.1,ENST00000572554.1,ENST00000570492.1	chr17	4844270:4844288:4845635:4845761:4845871:4845900,4844371:4844452:4845635:4845761:4845871:4845900,	4845636	4845761	4845732	4845732	Nonsense_Mutation	C	T	p.R88*
UCEC	TCGA-AP-A056-01	CAMTA2	ENST00000361571.5	chr17	4884519:4884654:4884972:4885126:4885383:4885455,4884519:4884654:4884972:4885126:4886051:4886187,	4884973	4885126	4885027	4885027	Nonsense_Mutation	G	A	p.R171*
UCEC	TCGA-AP-A056-01	CAMTA2	ENST00000574606.2	chr17	4884519:4884654:4884972:4885037:4886051:4886187,	4884973	4885037	4885027	4885027	Nonsense_Mutation	G	A	p.R171*
UCEC	TCGA-D1-A17Q-01	RABEP1	ENST00000546142.2,ENST00000341923.6,ENST00000408982.2	chr17	5185781:5185815:5211988:5212117:5235243:5235447,	5211989	5212117	5212066	5212066	Nonsense_Mutation	G	T	p.E38*
UCEC	TCGA-B5-A0JY-01	RABEP1	ENST00000546142.2,ENST00000341923.6,ENST00000408982.2	chr17	5185781:5185815:5211988:5212117:5235243:5235447,	5211989	5212117	5212066	5212066	Nonsense_Mutation	G	T	p.E38*
UCEC	TCGA-B5-A0JY-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5235349:5235447:5238478:5238639:5241313:5241433,	5238479	5238639	5238553	5238553	Nonsense_Mutation	G	T	p.E148*
UCEC	TCGA-BS-A0UV-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5276608:5276749:5280410:5280600:5281471:5281527,	5280411	5280600	5280483	5280483	Nonsense_Mutation	G	T	p.E700*
UCEC	TCGA-B5-A0JY-01	NUP88	ENST00000573584.1,ENST00000574867.1,ENST00000576862.1,ENST00000225696.4	chr17	5292121:5292280:5294880:5294982:5298210:5298299,	5294881	5294982	5294966	5294966	Nonsense_Mutation	G	A	p.R467*
UCEC	TCGA-AX-A05Z-01	DERL2	ENST00000571971.1,ENST00000570848.1,ENST00000575605.1	chr17	5383706:5383902:5384615:5384709:5386128:5386199,5384420:5384462:5384615:5384709:5386128:5386199,	5384616	5384709	5384696	5384696	Nonsense_Mutation	G	A	p.R83*
UCEC	TCGA-D1-A17Q-01	NLRP1	ENST00000544378.2,ENST00000262467.5	chr17	5405056:5405192:5421065:5421207:5424200:5424332,	5421066	5421207	5421189	5421189	Nonsense_Mutation	G	A	p.R1312*
UCEC	TCGA-AP-A0LM-01	YBX2	ENST00000571485.1,ENST00000007699.5,ENST00000571464.1,ENST00000570720.1,ENST00000571834.1	chr17	7192855:7193044:7193286:7193390:7193569:7193711,	7193287	7193390	7193324	7193324	Nonsense_Mutation	G	A	p.R271*
UCEC	TCGA-D1-A16Y-01	ACAP1	ENST00000158762.3	chr17	7251624:7251794:7252313:7252486:7253263:7253279,	7252314	7252486	7252364	7252364	Nonsense_Mutation	C	T	p.R577*
UCEC	TCGA-AP-A0LM-01	CD68	ENST00000380498.6	chr17	7482955:7483044:7483208:7483645:7483783:7483797,	7483209	7483645	7483613	7483613	Nonsense_Mutation	C	T	p.R179*
UCEC	TCGA-AP-A0LM-01	CD68	ENST00000584502.1	chr17	7482955:7483044:7483166:7483645:7483783:7483797,	7483167	7483645	7483613	7483613	Nonsense_Mutation	C	T	p.R179*
UCEC	TCGA-BS-A0UV-01	CD68	ENST00000380498.6	chr17	7482955:7483044:7483208:7483645:7483783:7483797,	7483209	7483645	7483613	7483613	Nonsense_Mutation	C	T	p.R179*
UCEC	TCGA-BS-A0UV-01	CD68	ENST00000584502.1	chr17	7482955:7483044:7483166:7483645:7483783:7483797,	7483167	7483645	7483613	7483613	Nonsense_Mutation	C	T	p.R179*
UCEC	TCGA-AP-A059-01	SHBG	ENST00000576152.1,ENST00000576478.1	chr17	7533997:7534187:7534906:7535066:7536521:7536672,	7534907	7535066	7535063	7535063	Nonsense_Mutation	C	T	p.R238*
UCEC	TCGA-B5-A11E-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Nonsense_Mutation	G	A	p.R342*
UCEC	TCGA-BS-A0UF-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
UCEC	TCGA-BS-A0UV-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
UCEC	TCGA-B5-A0JY-01	MYH10	ENST00000396239.1,ENST00000360416.3,ENST00000269243.4,ENST00000379980.4	chr17	8438704:8438819:8439075:8439249:8445424:8445598,	8439076	8439249	8439126	8439126	Nonsense_Mutation	G	A	p.R567*
UCEC	TCGA-B5-A11E-01	STX8	ENST00000306357.4,ENST00000574431.1	chr17	9395145:9395238:9408354:9408479:9471687:9471775,9395145:9395238:9408354:9408479:9448488:9448592,	9408355	9408479	9408431	9408431	Nonsense_Mutation	C	T	p.W124*
UCEC	TCGA-BS-A0UF-01	MYH13	ENST00000252172.4,ENST00000418404.3	chr17	10223469:10223560:10223667:10223813:10224848:10225025,	10223668	10223813	10223705	10223705	Nonsense_Mutation	C	A	p.E1074*
UCEC	TCGA-BS-A0UJ-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984782	11984782	Nonsense_Mutation	C	T	p.R110*
UCEC	TCGA-B5-A0JY-01	COX10	ENST00000261643.3	chr17	13977639:13977773:13980051:13980373:14005434:14005559,	13980052	13980373	13980289	13980289	Nonsense_Mutation	G	T	p.E139*
UCEC	TCGA-AX-A05Z-01	CCDC144A	ENST00000360495.5,ENST00000360524.8,ENST00000340621.5,ENST00000443444.2,ENST00000399273.1	chr17	16610782:16610856:16612109:16612949:16614992:16615129,	16612110	16612949	16612848	16612848	Nonsense_Mutation	G	T	p.E493*
UCEC	TCGA-AP-A0LM-01	MPRIP	ENST00000313485.6	chr17	17064553:17064670:17067422:17071229:17075031:17075156,	17067423	17071229	17069087	17069087	Nonsense_Mutation	G	T	p.G372*
UCEC	TCGA-B5-A11E-01	MPRIP	ENST00000429184.3	chr17	17076034:17076129:17077229:17077389:17079739:17079826,	17077230	17077389	17077285	17077285	Nonsense_Mutation	C	T	p.Q829*
UCEC	TCGA-B5-A11E-01	TOM1L2	ENST00000581396.1,ENST00000537091.2	chr17	17782940:17783057:17787947:17788082:17796974:17797124,17786018:17786177:17787947:17788082:17796974:17797124,17786018:17786177:17787947:17788082:17801909:17801988,	17787948	17788082	17788064	17788064	Nonsense_Mutation	G	A	p.R129*
UCEC	TCGA-B5-A0JY-01	AKAP10	ENST00000225737.6	chr17	19827720:19827830:19835117:19835291:19839598:19839743,	19835118	19835291	19835222	19835222	Nonsense_Mutation	G	A	p.R513*
UCEC	TCGA-AX-A0J0-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20109172	20109172	Nonsense_Mutation	G	T	p.E604*
UCEC	TCGA-AX-A0J0-01	DHRS7B	ENST00000582161.1,ENST00000395511.3,ENST00000579303.1,ENST00000346603.4	chr17	21075334:21075509:21081545:21081655:21086906:21086976,	21081546	21081655	21081629	21081629	Nonsense_Mutation	G	T	p.E95*
UCEC	TCGA-D1-A17Q-01	POLDIP2	ENST00000540200.1,ENST00000003607.4	chr17	26676108:26676188:26677463:26677589:26677791:26677814,	26677464	26677589	26677487	26677487	Nonsense_Mutation	G	A	p.R296*
UCEC	TCGA-AP-A056-01	PHF12	ENST00000582436.1,ENST00000577226.1,ENST00000332830.4	chr17	27237243:27237387:27238129:27238255:27239499:27239804,	27238130	27238255	27238154	27238154	Nonsense_Mutation	G	A	p.R731*
UCEC	TCGA-AP-A056-01	PHF12	ENST00000579036.2	chr17	27237243:27237387:27238129:27238192:27239499:27240112,	27238130	27238192	27238154	27238154	Nonsense_Mutation	G	A	p.R731*
UCEC	TCGA-B5-A0JY-01	PHF12	ENST00000582436.1,ENST00000577226.1,ENST00000332830.4	chr17	27237243:27237387:27238129:27238255:27239499:27239804,	27238130	27238255	27238154	27238154	Nonsense_Mutation	G	A	p.R731*
UCEC	TCGA-B5-A0JY-01	PHF12	ENST00000579036.2	chr17	27237243:27237387:27238129:27238192:27239499:27240112,	27238130	27238192	27238154	27238154	Nonsense_Mutation	G	A	p.R731*
UCEC	TCGA-D1-A16X-01	TAOK1	ENST00000261716.3	chr17	27834913:27835150:27837881:27838010:27844470:27844674,	27837882	27838010	27837990	27837990	Nonsense_Mutation	C	T	p.R562*
UCEC	TCGA-AP-A0LM-01	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844579	27844579	Nonsense_Mutation	C	T	p.R605*
UCEC	TCGA-AP-A051-01	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844611	27844611	Nonsense_Mutation	C	A	p.C615*
UCEC	TCGA-AX-A0J0-01	TAOK1	ENST00000261716.3	chr17	27849305:27849537:27857424:27857637:27861135:27861318,	27857425	27857637	27857431	27857431	Nonsense_Mutation	G	T	p.E719*
UCEC	TCGA-AP-A056-01	SSH2	ENST00000592397.1,ENST00000579040.1,ENST00000394848.1,ENST00000324677.7,ENST00000577483.1,ENST00000540801.1,ENST00000269033.3	chr17	28004736:28004759:28011580:28011702:28022476:28022541,	28011581	28011702	28011621	28011621	Nonsense_Mutation	C	A	p.E120*
UCEC	TCGA-AX-A05Z-01	SLC6A4	ENST00000401766.2,ENST00000394821.2,ENST00000261707.3	chr17	28545135:28545355:28545814:28545949:28548633:28549099,	28545815	28545949	28545857	28545857	Nonsense_Mutation	C	A	p.G146*
UCEC	TCGA-B5-A0JY-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29185178:29185341:29187450:29187630:29192721:29192818,	29187451	29187630	29187579	29187579	Nonsense_Mutation	G	T	p.E1029*
UCEC	TCGA-B5-A11N-01	ATAD5	ENST00000321990.4	chr17	29196513:29196664:29203391:29203568:29204433:29204567,	29203392	29203568	29203538	29203538	Nonsense_Mutation	G	T	p.E1252*
UCEC	TCGA-B5-A11Y-01	ATAD5	ENST00000321990.4	chr17	29206440:29206505:29214209:29214390:29219624:29219806,	29214210	29214390	29214372	29214372	Nonsense_Mutation	C	T	p.R1414*
UCEC	TCGA-BS-A0UF-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29221045	29221045	Nonsense_Mutation	C	A	p.S1725*
UCEC	TCGA-AP-A0LM-01	ADAP2	ENST00000580526.1	chr17	29253844:29253936:29258906:29258986:29261202:29261315,29249957:29250088:29258906:29258986:29261202:29261315,	29258907	29258986	29258929	29258929	Nonsense_Mutation	C	T	p.R114*
UCEC	TCGA-AP-A0LM-01	RNF135	ENST00000535306.2,ENST00000328381.5	chr17	29298158:29298463:29311634:29311778:29324259:29324266,29298158:29298463:29311634:29311778:29314961:29315124,	29311635	29311778	29311659	29311659	Nonsense_Mutation	G	T	p.E133*
UCEC	TCGA-AP-A056-01	LRRC37B	ENST00000394713.3,ENST00000584368.1	chr17	30351754:30351801:30354787:30354859:30357674:30357746,30351754:30351801:30354787:30354859:30361928:30362000,	30354788	30354859	30354829	30354829	Nonsense_Mutation	C	A	p.S598*
UCEC	TCGA-BS-A0UF-01	LIG3	ENST00000586435.1,ENST00000588109.1,ENST00000378526.4,ENST00000585740.1,ENST00000585941.1,ENST00000262327.5	chr17	33313112:33313150:33316484:33316682:33317981:33318084,	33316485	33316682	33316592	33316592	Nonsense_Mutation	C	T	p.R267*
UCEC	TCGA-AP-A051-01	SLFN5	ENST00000299977.4	chr17	33587989:33588115:33591201:33591922:33592090:33593379,	33591202	33591922	33591267	33591267	Nonsense_Mutation	G	T	p.G402*
UCEC	TCGA-A5-A0GP-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749312	33749312	Nonsense_Mutation	C	A	p.E246*
UCEC	TCGA-AX-A0J0-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749312	33749312	Nonsense_Mutation	C	A	p.E246*
UCEC	TCGA-AP-A0LM-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749390	33749390	Nonsense_Mutation	C	A	p.E220*
UCEC	TCGA-B5-A0JY-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806439	33806439	Nonsense_Mutation	C	A	p.E293*
UCEC	TCGA-BS-A0UV-01	RPL19	ENST00000579260.1,ENST00000582193.1,ENST00000579374.1,ENST00000225430.4,ENST00000585199.1	chr17	37357474:37357572:37358569:37358692:37359241:37359332,	37358570	37358692	37358641	37358641	Nonsense_Mutation	C	T	p.R62*
UCEC	TCGA-BS-A0UF-01	IKZF3	ENST00000351680.3,ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000346243.3	chr17	37944510:37944627:37948925:37949186:37985639:37985741,37947668:37947836:37948925:37949186:37985639:37985741,	37948926	37949186	37948938	37948938	Nonsense_Mutation	G	A	p.R138*
UCEC	TCGA-AX-A05Z-01	IKZF3	ENST00000351680.3,ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000346243.3	chr17	37944510:37944627:37948925:37949186:37985639:37985741,37947668:37947836:37948925:37949186:37985639:37985741,	37948926	37949186	37949076	37949076	Nonsense_Mutation	C	A	p.E92*
UCEC	TCGA-AP-A059-01	TOP2A	ENST00000423485.1	chr17	38563800:38563926:38564218:38564376:38564743:38564882,	38564219	38564376	38564257	38564257	Nonsense_Mutation	C	A	p.G488*
UCEC	TCGA-AP-A059-01	KRT15	ENST00000393974.3,ENST00000254043.3,ENST00000393976.2	chr17	39670008:39670372:39670900:39670926:39671723:39671944,	39670901	39670926	39670904	39670904	Nonsense_Mutation	C	A	p.E424*
UCEC	TCGA-BS-A0UV-01	ACLY	ENST00000352035.2,ENST00000393896.2,ENST00000353196.1,ENST00000590151.1,ENST00000590770.1	chr17	40054883:40055038:40057948:40058066:40060981:40061043,	40057949	40058066	40058048	40058048	Nonsense_Mutation	G	A	p.R362*
UCEC	TCGA-AP-A0LM-01	NKIRAS2	ENST00000491638.1	chr17	40173581:40173689:40174393:40174658:40175671:40175859,	40174394	40174658	40174518	40174518	Nonsense_Mutation	C	T	p.R66*
UCEC	TCGA-AP-A0LM-01	NKIRAS2	ENST00000393880.1,ENST00000393881.3,ENST00000393885.4,ENST00000307641.5	chr17	40173581:40173689:40174416:40174658:40175671:40175859,	40174417	40174658	40174518	40174518	Nonsense_Mutation	C	T	p.R66*
UCEC	TCGA-B5-A0JY-01	GHDC	ENST00000587427.1,ENST00000593209.1,ENST00000301671.8,ENST00000428494.2	chr17	40342202:40342288:40342641:40342775:40342849:40342921,	40342642	40342775	40342753	40342753	Nonsense_Mutation	G	A	p.R393*
UCEC	TCGA-D1-A15X-01	STAT3	ENST00000585517.1,ENST00000264657.5,ENST00000404395.3,ENST00000585360.1,ENST00000588969.1	chr17	40497576:40497675:40498586:40498731:40500406:40500534,	40498587	40498731	40498610	40498610	Nonsense_Mutation	G	A	p.R84*
UCEC	TCGA-AP-A0LM-01	EZH1	ENST00000592743.1,ENST00000586103.1,ENST00000585912.1,ENST00000590078.1,ENST00000435174.1,ENST00000415827.2,ENST00000428826.2,ENST00000585893.1,ENST00000585550.1,ENST00000588897.1,ENST00000591330.1	chr17	40857105:40857201:40858024:40858203:40859975:40860101,	40858025	40858203	40858129	40858129	Nonsense_Mutation	G	A	p.R579*
UCEC	TCGA-BS-A0UV-01	EZH1	ENST00000586089.1,ENST00000585893.1	chr17	40872455:40872467:40874812:40874933:40876322:40876442,40872455:40872467:40874812:40874933:40879652:40879781,	40874813	40874933	40874816	40874816	Nonsense_Mutation	C	A	p.E162*
UCEC	TCGA-AX-A0J0-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41245531	41245531	Nonsense_Mutation	C	A	p.E673*
UCEC	TCGA-AP-A056-01	ETV4	ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000545089.1,ENST00000319349.5,ENST00000545954.1,ENST00000586826.1	chr17	41606871:41607044:41607251:41607320:41607474:41607549,	41607252	41607320	41607297	41607297	Nonsense_Mutation	G	A	p.R304*
UCEC	TCGA-AP-A0LM-01	MEOX1	ENST00000393661.2	chr17	41719281:41719400:41720855:41721028:41738433:41738761,	41720856	41721028	41720948	41720948	Nonsense_Mutation	G	A	p.R184*
UCEC	TCGA-AX-A05Z-01	C17orf53	ENST00000588073.1,ENST00000585683.1,ENST00000319977.4	chr17	42232220:42232306:42232653:42232779:42235200:42235309,	42232654	42232779	42232678	42232678	Nonsense_Mutation	C	T	p.R558*
UCEC	TCGA-B5-A0JY-01	ATXN7L3	ENST00000454077.2	chr17	42273167:42273196:42273401:42273468:42273763:42273786,	42273402	42273468	42273432	42273432	Nonsense_Mutation	G	A	p.R172*
UCEC	TCGA-B5-A0JY-01	ATXN7L3	ENST00000389384.4,ENST00000587097.1	chr17	42273167:42273196:42273401:42273447:42273763:42273786,	42273402	42273447	42273432	42273432	Nonsense_Mutation	G	A	p.R172*
UCEC	TCGA-AP-A0LM-01	GFAP	ENST00000585543.1,ENST00000588640.1,ENST00000253408.5	chr17	42985502:42985517:42987982:42988026:42988603:42988689,	42987983	42988026	42988010	42988010	Nonsense_Mutation	G	A	p.Q382*
UCEC	TCGA-B5-A11N-01	ARHGAP27	ENST00000532891.2,ENST00000376922.2,ENST00000529357.1,ENST00000532038.1,ENST00000528677.1,ENST00000531735.1,ENST00000455881.1,ENST00000428638.1	chr17	43481840:43481894:43481966:43482047:43482289:43482472,	43481967	43482047	43481984	43481984	Nonsense_Mutation	G	A	p.R97*
UCEC	TCGA-A5-A0GP-01	CDC27	ENST00000066544.3,ENST00000527547.1,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45209622:45209740:45214517:45214726:45216104:45216257,	45214518	45214726	45214585	45214585	Nonsense_Mutation	C	A	p.E622*
UCEC	TCGA-D1-A16X-01	CDC27	ENST00000066544.3,ENST00000527547.1,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45209622:45209740:45214517:45214726:45216104:45216257,	45214518	45214726	45214585	45214585	Nonsense_Mutation	C	A	p.E622*
UCEC	TCGA-B5-A0JY-01	PNPO	ENST00000225573.4,ENST00000544840.1,ENST00000534893.1,ENST00000582171.1	chr17	46023226:46023355:46023688:46023759:46023979:46024115,	46023689	46023759	46023710	46023710	Nonsense_Mutation	G	T	p.E190*
UCEC	TCGA-AX-A0J1-01	COPZ2	ENST00000006101.4,ENST00000584666.1,ENST00000584955.1	chr17	46106502:46106542:46109521:46109599:46110576:46110618,46106490:46106542:46109521:46109599:46110051:46110071,	46109522	46109599	46109558	46109558	Nonsense_Mutation	C	A	p.E152*
UCEC	TCGA-BS-A0UF-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394859	47394859	Nonsense_Mutation	C	A	p.E77*
UCEC	TCGA-B5-A0JY-01	SLC35B1	ENST00000507773.1,ENST00000240333.6,ENST00000415270.2,ENST00000502406.1	chr17	47778700:47778872:47780219:47780373:47780549:47780656,	47780220	47780373	47780310	47780310	Nonsense_Mutation	G	A	p.R276*
UCEC	TCGA-AX-A05Z-01	FAM117A	ENST00000514018.1,ENST00000240364.2,ENST00000505159.1,ENST00000513602.1,ENST00000515240.1	chr17	47797765:47797798:47799860:47799956:47809912:47810082,	47799861	47799956	47799863	47799863	Nonsense_Mutation	C	A	p.E154*
UCEC	TCGA-B5-A0JY-01	KAT7	ENST00000454930.2,ENST00000503935.2,ENST00000259021.4	chr17	47882724:47882807:47886480:47886570:47888837:47888936,	47886481	47886570	47886511	47886511	Nonsense_Mutation	G	T	p.E232*
UCEC	TCGA-B5-A0JY-01	EPN3	ENST00000537145.1,ENST00000574464.1,ENST00000512379.1,ENST00000268933.3	chr17	48616547:48616676:48618153:48618423:48618589:48618694,48617607:48617695:48618153:48618423:48618589:48618694,	48618154	48618423	48618243	48618243	Nonsense_Mutation	C	T	p.R357*
UCEC	TCGA-BS-A0UV-01	SPAG9	ENST00000514613.1,ENST00000505173.1,ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1	chr17	49077021:49077078:49079075:49079206:49082572:49082624,	49079076	49079206	49079095	49079095	Nonsense_Mutation	G	A	p.R530*
UCEC	TCGA-BS-A0UV-01	MMD	ENST00000262065.3	chr17	53469973:53471895:53478829:53478899:53481127:53481229,	53478830	53478899	53478886	53478886	Nonsense_Mutation	C	A	p.E154*
UCEC	TCGA-AX-A0J0-01	LPO	ENST00000262290.4,ENST00000580890.1,ENST00000543544.1,ENST00000421678.2,ENST00000582328.1	chr17	56329650:56329867:56332171:56332332:56342082:56342335,	56332172	56332332	56332252	56332252	Nonsense_Mutation	G	T	p.E396*
UCEC	TCGA-B5-A11E-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57092970:57093160:57094656:57094785:57105775:57105940,	57094657	57094785	57094720	57094720	Nonsense_Mutation	G	A	p.R775*
UCEC	TCGA-AP-A056-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57092970:57093160:57094656:57094785:57105775:57105940,	57094657	57094785	57094720	57094720	Nonsense_Mutation	G	A	p.R775*
UCEC	TCGA-AP-A0LM-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57094656:57094785:57105775:57106084:57109256:57109451,	57105776	57106084	57105821	57105821	Nonsense_Mutation	C	A	p.E738*
UCEC	TCGA-B5-A0JY-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57128574:57128689:57134235:57134415:57138392:57138469,	57134236	57134415	57134351	57134351	Nonsense_Mutation	C	A	p.E362*
UCEC	TCGA-AP-A059-01	PRR11	ENST00000581182.1,ENST00000578542.1,ENST00000580177.1	chr17	57233117:57233166:57247108:57247241:57262414:57262565,	57247109	57247241	57247132	57247132	Nonsense_Mutation	C	T	p.R7*
UCEC	TCGA-B5-A0JY-01	GDPD1	ENST00000579076.1,ENST00000581140.1,ENST00000578026.1,ENST00000581276.1,ENST00000284116.4	chr17	57344404:57344535:57348296:57348356:57350145:57350166,	57348297	57348356	57348304	57348304	Nonsense_Mutation	G	T	p.E240*
UCEC	TCGA-BS-A0UV-01	GDPD1	ENST00000579076.1,ENST00000578026.1,ENST00000579020.1,ENST00000284116.4	chr17	57348296:57348356:57350145:57350197:57351011:57351077,	57350146	57350197	57350186	57350186	Nonsense_Mutation	C	T	p.R271*
UCEC	TCGA-BS-A0UF-01	CLTC	ENST00000579456.1,ENST00000269122.3,ENST00000393043.1	chr17	57759678:57759789:57759989:57760154:57760267:57760375,	57759990	57760154	57760152	57760152	Nonsense_Mutation	G	T	p.E1255*
UCEC	TCGA-D1-A15X-01	APPBP2	ENST00000083182.3,ENST00000589341.1	chr17	58525106:58525195:58529240:58529406:58531662:58531853,	58529241	58529406	58529256	58529256	Nonsense_Mutation	G	A	p.R497*
UCEC	TCGA-AP-A059-01	APPBP2	ENST00000585368.1,ENST00000590244.1	chr17	58571834:58571978:58577759:58577848:58603154:58603299,	58577760	58577848	58577836	58577836	Nonsense_Mutation	C	A	p.G51*
UCEC	TCGA-BS-A0UF-01	BCAS3	ENST00000407086.3,ENST00000585744.1,ENST00000588462.1,ENST00000408905.3,ENST00000390652.5,ENST00000589222.1,ENST00000588874.1	chr17	59024579:59024713:59067331:59067596:59093111:59093146,	59067332	59067596	59067518	59067518	Nonsense_Mutation	G	T	p.E470*
UCEC	TCGA-B5-A0JY-01	MED13	ENST00000397786.2	chr17	60045395:60045619:60050087:60050249:60059558:60060475,	60050088	60050249	60050217	60050217	Nonsense_Mutation	G	A	p.R1280*
UCEC	TCGA-B5-A11E-01	TLK2	ENST00000326270.9,ENST00000581041.1,ENST00000343388.7,ENST00000542523.1,ENST00000346027.5,ENST00000582809.1	chr17	60631023:60631116:60637376:60637487:60642361:60642498,	60637377	60637487	60637440	60637440	Nonsense_Mutation	C	T	p.R262*
UCEC	TCGA-BS-A0UV-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61428610:61428777:61432143:61432751:61457078:61457187,	61432144	61432751	61432186	61432186	Nonsense_Mutation	C	T	p.R599*
UCEC	TCGA-B5-A0JY-01	TEX2	ENST00000258991.3,ENST00000583097.1,ENST00000584379.1	chr17	62232306:62232327:62238160:62238293:62248459:62248559,	62238161	62238293	62238177	62238177	Nonsense_Mutation	C	A	p.E937*
UCEC	TCGA-BS-A0UF-01	CEP95	ENST00000553956.2,ENST00000556440.2	chr17	62510365:62510476:62512840:62512946:62515438:62515554,	62512841	62512946	62512864	62512864	Nonsense_Mutation	G	T	p.E131*
UCEC	TCGA-B5-A0JY-01	LRRC37A3	ENST00000584306.1,ENST00000334962.5,ENST00000400877.3,ENST00000319651.5,ENST00000339474.5	chr17	62851957:62852007:62854896:62855001:62855559:62855745,	62854897	62855001	62854992	62854992	Nonsense_Mutation	C	A	p.E1572*
UCEC	TCGA-A5-A0GP-01	RGS9	ENST00000577595.1,ENST00000443584.3,ENST00000581175.1,ENST00000584234.1,ENST00000449996.3,ENST00000262406.9	chr17	63189660:63189774:63193243:63193359:63198110:63198198,	63193244	63193359	63193350	63193350	Nonsense_Mutation	G	T	p.E323*
UCEC	TCGA-AP-A056-01	CEP112	ENST00000535342.2,ENST00000392769.2,ENST00000537949.1	chr17	63746787:63746842:63847921:63848152:63898269:63898452,	63847922	63848152	63848110	63848110	Nonsense_Mutation	C	A	p.E736*
UCEC	TCGA-B5-A0JY-01	CEP112	ENST00000541355.1,ENST00000535342.2,ENST00000392769.2,ENST00000537949.1	chr17	63957580:63957716:64001807:64001887:64023618:64023678,	64001808	64001887	64001869	64001869	Nonsense_Mutation	C	A	p.E559*
UCEC	TCGA-AP-A0LM-01	CEP112	ENST00000541355.1,ENST00000535342.2,ENST00000583358.1,ENST00000392769.2,ENST00000537949.1	chr17	64025240:64025370:64025986:64026141:64049853:64049997,	64025987	64026141	64026093	64026093	Nonsense_Mutation	C	A	p.E423*
UCEC	TCGA-D1-A17Q-01	CEP112	ENST00000541355.1,ENST00000535342.2,ENST00000583358.1,ENST00000392769.2,ENST00000537949.1	chr17	64025240:64025370:64025986:64026141:64049853:64049997,	64025987	64026141	64026126	64026126	Nonsense_Mutation	C	A	p.E412*
UCEC	TCGA-B5-A0JY-01	CEP112	ENST00000541355.1,ENST00000535342.2,ENST00000583358.1,ENST00000392769.2,ENST00000537949.1	chr17	64059080:64059199:64062895:64062995:64066032:64066062,	64062896	64062995	64062923	64062923	Nonsense_Mutation	C	A	p.E310*
UCEC	TCGA-BS-A0UF-01	APOH	ENST00000205948.6	chr17	64208156:64208306:64210570:64210768:64212905:64213082,	64210571	64210768	64210703	64210703	Nonsense_Mutation	C	A	p.E284*
UCEC	TCGA-AX-A0J0-01	APOH	ENST00000585162.1	chr17	64210570:64210768:64212905:64213085:64216671:64216748,64208156:64208306:64212905:64213085:64216671:64216748,	64212906	64213085	64212957	64212957	Nonsense_Mutation	C	A	p.E245*
UCEC	TCGA-B5-A11U-01	APOH	ENST00000577982.1	chr17	64222145:64222242:64224137:64224314:64225433:64225535,	64224138	64224314	64224207	64224207	Nonsense_Mutation	G	A	p.R58*
UCEC	TCGA-AX-A0J0-01	APOH	ENST00000577982.1	chr17	64222145:64222242:64224137:64224314:64225433:64225535,	64224138	64224314	64224246	64224246	Nonsense_Mutation	C	A	p.E45*
UCEC	TCGA-B5-A0JY-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584289.1,ENST00000584008.1	chr17	65344665:65344770:65346344:65346452:65353418:65353547,	65346345	65346452	65346383	65346383	Nonsense_Mutation	G	A	p.R123*
UCEC	TCGA-AP-A0LM-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584289.1,ENST00000584008.1	chr17	65344665:65344770:65346344:65346452:65353418:65353547,	65346345	65346452	65346383	65346383	Nonsense_Mutation	G	A	p.R123*
UCEC	TCGA-AP-A0LM-01	SLC16A6	ENST00000580666.1	chr17	66270188:66270211:66274229:66274468:66287226:66287257,	66274230	66274468	66274373	66274373	Nonsense_Mutation	G	T	p.S30*
UCEC	TCGA-AX-A0J0-01	ARSG	ENST00000448504.2,ENST00000452479.2,ENST00000582154.1	chr17	66366584:66366665:66381204:66381313:66391213:66391334,	66381205	66381313	66381269	66381269	Nonsense_Mutation	G	A	p.W349*
UCEC	TCGA-BS-A0UF-01	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000430352.2,ENST00000586539.1	chr17	66924056:66924204:66925189:66925375:66925701:66925843,	66925190	66925375	66925272	66925272	Nonsense_Mutation	G	T	p.S348*
UCEC	TCGA-BS-A0UV-01	ABCA6	ENST00000284425.2,ENST00000446604.2	chr17	67075350:67075406:67077206:67077286:67079013:67079154,	67077207	67077286	67077213	67077213	Nonsense_Mutation	C	A	p.E1564*
UCEC	TCGA-D1-A17Q-01	ABCA6	ENST00000284425.2	chr17	67092768:67092942:67094060:67094168:67096937:67097075,	67094061	67094168	67094159	67094159	Nonsense_Mutation	C	A	p.G1008*
UCEC	TCGA-A5-A0GP-01	ABCA10	ENST00000269081.4,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67189633:67189753:67189954:67190130:67190525:67190636,	67189955	67190130	67190014	67190014	Nonsense_Mutation	C	A	p.E488*
UCEC	TCGA-AX-A0J0-01	ABCA10	ENST00000524273.1,ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000432313.2,ENST00000523419.1,ENST00000522406.1	chr17	67215832:67215912:67217932:67218036:67218673:67218754,	67217933	67218036	67217935	67217935	Nonsense_Mutation	C	A	p.E101*
UCEC	TCGA-BS-A0UV-01	ABCA5	ENST00000392676.3,ENST00000586811.1,ENST00000392677.2,ENST00000591234.1,ENST00000586995.1,ENST00000588877.1	chr17	67251683:67251775:67251873:67251991:67252297:67252424,	67251874	67251991	67251958	67251958	Nonsense_Mutation	C	A	p.E1298*
UCEC	TCGA-BS-A0TC-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232108	71232108	Nonsense_Mutation	C	T	p.R163*
UCEC	TCGA-AP-A0LM-01	RPL38	ENST00000533498.1,ENST00000439590.2,ENST00000311111.6	chr17	72200268:72200329:72205325:72205448:72205942:72206019,	72205326	72205448	72205370	72205370	Nonsense_Mutation	C	T	p.R37*
UCEC	TCGA-B5-A11Y-01	TTYH2	ENST00000526858.1,ENST00000529107.1,ENST00000269346.4,ENST00000441391.2	chr17	72248372:72248515:72249219:72249405:72249893:72249972,	72249220	72249405	72249359	72249359	Nonsense_Mutation	C	T	p.Q467*
UCEC	TCGA-D1-A167-01	TSEN54	ENST00000583173.1	chr17	73517489:73517591:73518087:73518414:73519355:73519368,	73518088	73518414	73518243	73518243	Nonsense_Mutation	C	T	p.Q361*
UCEC	TCGA-D1-A167-01	TSEN54	ENST00000333213.6	chr17	73517489:73517591:73517785:73518414:73519355:73519368,	73517786	73518414	73518243	73518243	Nonsense_Mutation	C	T	p.Q361*
UCEC	TCGA-A5-A0VP-01	LLGL2	ENST00000392550.3,ENST00000578638.1,ENST00000545227.2,ENST00000577500.1,ENST00000577200.1,ENST00000167462.5	chr17	73567036:73567181:73567747:73567864:73567978:73568145,	73567748	73567864	73567858	73567858	Nonsense_Mutation	G	T	p.E763*
UCEC	TCGA-BS-A0UF-01	QRICH2	ENST00000262765.5,ENST00000532549.1,ENST00000524722.1	chr17	74274069:74274270:74275121:74275223:74275443:74275509,	74275122	74275223	74275153	74275153	Nonsense_Mutation	C	A	p.E1463*
UCEC	TCGA-D1-A17Q-01	MFSD11	ENST00000585692.1,ENST00000355954.3,ENST00000588460.1,ENST00000593181.1,ENST00000590514.1,ENST00000336509.4,ENST00000588768.1,ENST00000585865.1,ENST00000585958.1,ENST00000586622.1	chr17	74763522:74763533:74765827:74765953:74771078:74771163,	74765828	74765953	74765944	74765944	Nonsense_Mutation	G	T	p.E289*
UCEC	TCGA-BS-A0UF-01	DNAH17	ENST00000586052.1,ENST00000389840.5,ENST00000585328.1,ENST00000591369.1	chr17	76441639:76441762:76445495:76445666:76446335:76446476,	76445496	76445666	76445562	76445562	Nonsense_Mutation	G	T	p.Y3701*
UCEC	TCGA-B5-A11E-01	USP36	ENST00000588086.1,ENST00000312010.6,ENST00000586066.2,ENST00000449938.2,ENST00000542802.3,ENST00000589225.1,ENST00000588467.1,ENST00000590312.1	chr17	76809053:76809083:76809854:76809955:76810493:76810634,	76809855	76809955	76809946	76809946	Nonsense_Mutation	C	A	p.G392*
UCEC	TCGA-AP-A0LM-01	EIF4A3	ENST00000576573.1,ENST00000269349.3	chr17	78109802:78109930:78110026:78110134:78111184:78111300,	78110027	78110134	78110133	78110133	Nonsense_Mutation	G	A	p.R329*
UCEC	TCGA-BS-A0UF-01	RPTOR	ENST00000575542.1,ENST00000537330.1,ENST00000306801.3,ENST00000574767.1,ENST00000577161.1,ENST00000544334.2	chr17	78796000:78796101:78796878:78797023:78811721:78811797,	78796879	78797023	78796929	78796929	Nonsense_Mutation	C	T	p.R348*
UCEC	TCGA-B5-A11E-01	NARF	ENST00000577410.1,ENST00000582907.1,ENST00000412079.2,ENST00000581202.1,ENST00000309794.11,ENST00000577812.1,ENST00000457415.3,ENST00000579198.1,ENST00000390006.4,ENST00000584411.1,ENST00000581743.1,ENST00000374611.5,ENST00000580296.1,ENST00000577432.1,ENST00000581795.1	chr17	80417875:80417948:80422162:80422306:80426639:80426663,	80422163	80422306	80422166	80422166	Nonsense_Mutation	G	T	p.G38*
UCEC	TCGA-BS-A0UF-01	FN3K	ENST00000300784.7	chr17	80699186:80699269:80706730:80706853:80708292:80709073,	80706731	80706853	80706737	80706737	Nonsense_Mutation	G	T	p.E159*
UCEC	TCGA-BS-A0UV-01	TBCD	ENST00000576677.1,ENST00000355528.4,ENST00000576603.1	chr17	80890562:80890611:80895146:80895236:80895924:80896012,	80895147	80895236	80895187	80895187	Nonsense_Mutation	G	T	p.E1078*
UCEC	TCGA-AP-A059-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891275	2891275	Nonsense_Mutation	C	T	p.R384*
UCEC	TCGA-B5-A11R-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2892001	2892001	Nonsense_Mutation	C	T	p.Q626*
UCEC	TCGA-BS-A0UV-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3090655:3090800:3094167:3094304:3100156:3100201,	3094168	3094304	3094169	3094169	Nonsense_Mutation	G	A	p.R1191*
UCEC	TCGA-B5-A0JY-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3090655:3090800:3094167:3094304:3100156:3100201,	3094168	3094304	3094275	3094275	Nonsense_Mutation	C	A	p.E1253*
UCEC	TCGA-B5-A0JY-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000583809.1,ENST00000581231.1,ENST00000583054.1,ENST00000317931.7	chr18	6244565:6244587:6263945:6264037:6301901:6301956,	6263946	6264037	6263987	6263987	Nonsense_Mutation	C	A	p.E60*
UCEC	TCGA-AP-A0LM-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	7955118:7955412:8069683:8069992:8076452:8076562,	8069684	8069992	8069839	8069839	Nonsense_Mutation	C	T	p.R430*
UCEC	TCGA-AX-A05Z-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254250	9254250	Nonsense_Mutation	G	T	p.E329*
UCEC	TCGA-BS-A0UF-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257187	9257187	Nonsense_Mutation	C	T	p.R1308*
UCEC	TCGA-BS-A0UV-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257187	9257187	Nonsense_Mutation	C	T	p.R1308*
UCEC	TCGA-AP-A0LM-01	TWSG1	ENST00000262120.5	chr18	9359969:9360069:9396277:9396544:9399343:9400815,	9396278	9396544	9396292	9396292	Nonsense_Mutation	C	T	p.R80*
UCEC	TCGA-B5-A11E-01	SPIRE1	ENST00000487491.1,ENST00000309836.5,ENST00000410092.3,ENST00000409402.4,ENST00000440472.2,ENST00000453447.2,ENST00000383356.2	chr18	12496014:12496101:12506475:12506640:12512452:12512530,	12506476	12506640	12506637	12506637	Nonsense_Mutation	G	A	p.R271*
UCEC	TCGA-AX-A0J1-01	CEP76	ENST00000592660.1,ENST00000585751.1,ENST00000262127.2,ENST00000593250.1,ENST00000590143.1	chr18	12695252:12695350:12697221:12697407:12698977:12699122,	12697222	12697407	12697283	12697283	Nonsense_Mutation	C	T	p.W215*
UCEC	TCGA-AP-A0LM-01	PTPN2	ENST00000587703.1,ENST00000591115.1,ENST00000327283.3	chr18	12785683:12785843:12794382:12794484:12801968:12802150,	12794383	12794484	12794465	12794465	Nonsense_Mutation	G	A	p.R354*
UCEC	TCGA-AP-A0LM-01	CEP192	ENST00000511820.2,ENST00000510237.1,ENST00000506447.1,ENST00000513432.1,ENST00000430049.2,ENST00000325971.8,ENST00000589596.1	chr18	13040828:13040955:13042202:13042333:13048857:13049680,	13042203	13042333	13042241	13042241	Nonsense_Mutation	G	T	p.G63*
UCEC	TCGA-AP-A059-01	CEP192	ENST00000511820.2,ENST00000506447.1,ENST00000540847.2,ENST00000513432.1,ENST00000430049.2,ENST00000325971.8	chr18	13114128:13114250:13116375:13116502:13117583:13117611,	13116376	13116502	13116476	13116476	Nonsense_Mutation	C	T	p.R1868*
UCEC	TCGA-AP-A059-01	CEP192	ENST00000589993.1,ENST00000510237.1	chr18	13104982:13105078:13116372:13116502:13117583:13117611,	13116373	13116502	13116476	13116476	Nonsense_Mutation	C	T	p.R1868*
UCEC	TCGA-AP-A0LM-01	ANKRD30B	ENST00000580206.1,ENST00000358984.4	chr18	14797659:14797688:14797780:14797853:14799099:14799128,	14797781	14797853	14797838	14797838	Nonsense_Mutation	G	T	p.E672*
UCEC	TCGA-B5-A0JY-01	ROCK1	ENST00000399799.2	chr18	18540096:18540167:18546877:18547037:18547712:18547901,	18546878	18547037	18546980	18546980	Nonsense_Mutation	C	A	p.E1084*
UCEC	TCGA-AP-A056-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153436	19153436	Nonsense_Mutation	C	A	p.E457*
UCEC	TCGA-BS-A0UF-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153793	19153793	Nonsense_Mutation	C	A	p.E338*
UCEC	TCGA-BS-A0UV-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154243	19154243	Nonsense_Mutation	C	A	p.E188*
UCEC	TCGA-AP-A059-01	GATA6	ENST00000581694.1,ENST00000269216.3	chr18	19761413:19761539:19762717:19762805:19762900:19763004,	19762718	19762805	19762801	19762801	Nonsense_Mutation	C	A	p.C504*
UCEC	TCGA-AP-A056-01	RBBP8	ENST00000399722.2,ENST00000327155.5,ENST00000583057.1,ENST00000581687.1,ENST00000360790.5	chr18	20596799:20596887:20602091:20602233:20606105:20606333,	20602092	20602233	20602122	20602122	Nonsense_Mutation	G	T	p.E829*
UCEC	TCGA-B5-A11E-01	RIOK3	ENST00000577501.1	chr18	21057151:21057232:21059289:21059388:21061135:21061329,	21059290	21059388	21059320	21059320	Nonsense_Mutation	C	T	p.R462*
UCEC	TCGA-B5-A11E-01	RIOK3	ENST00000581585.1,ENST00000581339.1,ENST00000339486.3,ENST00000581302.1	chr18	21057151:21057232:21059280:21059388:21061135:21061329,	21059281	21059388	21059320	21059320	Nonsense_Mutation	C	T	p.R462*
UCEC	TCGA-B5-A11E-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21394366:21394466:21395151:21395204:21395431:21395537,	21395152	21395204	21395184	21395184	Nonsense_Mutation	G	T	p.G641*
UCEC	TCGA-B5-A11E-01	TTC39C	ENST00000304621.6,ENST00000579214.1,ENST00000317571.3,ENST00000540918.2	chr18	21694517:21694611:21698088:21698196:21703797:21703901,	21698089	21698196	21698106	21698106	Nonsense_Mutation	G	T	p.E366*
UCEC	TCGA-AP-A059-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21736378	21736378	Nonsense_Mutation	G	T	p.G305*
UCEC	TCGA-BS-A0UF-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22804665	22804665	Nonsense_Mutation	C	A	p.E1073*
UCEC	TCGA-B5-A0JY-01	KCTD1	ENST00000417602.1,ENST00000317932.7,ENST00000580059.1,ENST00000580191.1,ENST00000408011.3,ENST00000580638.1,ENST00000579973.1	chr18	24035855:24035865:24039583:24039889:24056478:24056623,	24039584	24039889	24039876	24039876	Nonsense_Mutation	A	C	p.L716*
UCEC	TCGA-AP-A056-01	DSC3	ENST00000434452.1,ENST00000360428.4	chr18	28604314:28604459:28605725:28605881:28609474:28609594,	28605726	28605881	28605815	28605815	Nonsense_Mutation	C	A	p.E181*
UCEC	TCGA-AP-A056-01	DSG1	ENST00000257192.4,ENST00000462981.2	chr18	28923888:28923958:28925952:28926161:28934259:28935630,	28925953	28926161	28926072	28926072	Nonsense_Mutation	G	T	p.E671*
UCEC	TCGA-B5-A0JY-01	DSG4	ENST00000359747.4,ENST00000308128.4	chr18	28979234:28979506:28980843:28980983:28983378:28983597,	28980844	28980983	28980878	28980878	Nonsense_Mutation	A	T	p.K438*
UCEC	TCGA-AP-A056-01	DSG2	ENST00000261590.8	chr18	29121155:29121277:29122482:29122815:29125683:29128971,	29122483	29122815	29122789	29122789	Nonsense_Mutation	G	T	p.E770*
UCEC	TCGA-BS-A0UV-01	TRAPPC8	ENST00000578886.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29429528:29429702:29432408:29432467:29432557:29432626,	29432409	29432467	29432414	29432414	Nonsense_Mutation	C	A	p.E1186*
UCEC	TCGA-AP-A0LM-01	RNF125	ENST00000217740.3	chr18	29617147:29617232:29622141:29622236:29625604:29625695,	29622142	29622236	29622214	29622214	Nonsense_Mutation	G	T	p.E131*
UCEC	TCGA-BS-A0UJ-01	DTNA	ENST00000588125.1,ENST00000269190.7,ENST00000315456.6,ENST00000590412.1,ENST00000598334.1,ENST00000283365.9,ENST00000590598.1,ENST00000595022.1,ENST00000554864.3,ENST00000598142.1,ENST00000598774.1,ENST00000399097.3,ENST00000596745.1,ENST00000399121.5	chr18	32290260:32290409:32335939:32336007:32345924:32345987,32259500:32259556:32335939:32336007:32345924:32345987,	32335940	32336007	32335965	32335965	Nonsense_Mutation	G	T	p.G9*
UCEC	TCGA-BS-A0UF-01	ZNF397	ENST00000589420.1,ENST00000261333.6	chr18	32823115:32823257:32825225:32825315:32834195:32834366,	32825226	32825315	32825306	32825306	Nonsense_Mutation	C	T	p.R213*
UCEC	TCGA-AP-A051-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706379	33706379	Nonsense_Mutation	C	A	p.G198*
UCEC	TCGA-B5-A0JY-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33726212:33726344:33734812:33734962:33736428:33736617,	33734813	33734962	33734888	33734888	Nonsense_Mutation	G	T	p.E401*
UCEC	TCGA-BS-A0UV-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298583	34298583	Nonsense_Mutation	G	T	p.E933*
UCEC	TCGA-BS-A0UJ-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40853691	40853691	Nonsense_Mutation	C	A	p.E235*
UCEC	TCGA-AX-A05Z-01	EPG5	ENST00000587974.1,ENST00000282041.5	chr18	43497643:43497784:43502306:43502566:43503233:43503353,	43502307	43502566	43502542	43502542	Nonsense_Mutation	G	A	p.R955*
UCEC	TCGA-D1-A103-01	LOXHD1	ENST00000579038.1,ENST00000335730.2,ENST00000300591.6,ENST00000398722.4,ENST00000441551.2,ENST00000536736.1,ENST00000441893.2,ENST00000582408.1	chr18	44113124:44113287:44114297:44114414:44118118:44118300,	44114298	44114414	44114399	44114399	Nonsense_Mutation	C	A	p.E1093*
UCEC	TCGA-AP-A056-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470803	44470803	Nonsense_Mutation	G	T	p.S80*
UCEC	TCGA-D1-A167-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470843	44470843	Nonsense_Mutation	G	A	p.R67*
UCEC	TCGA-AX-A05Z-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470867	44470867	Nonsense_Mutation	C	A	p.E59*
UCEC	TCGA-BS-A0UF-01	KATNAL2	ENST00000356157.7,ENST00000245121.5	chr18	44589654:44589732:44593391:44593490:44595590:44595654,	44593392	44593490	44593467	44593467	Nonsense_Mutation	G	T	p.E196*
UCEC	TCGA-B5-A0JY-01	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645263	46645263	Nonsense_Mutation	G	A	p.R533*
UCEC	TCGA-D1-A17Q-01	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645263	46645263	Nonsense_Mutation	G	A	p.R533*
UCEC	TCGA-B5-A0JY-01	DYM	ENST00000269445.6,ENST00000579058.1,ENST00000578596.1,ENST00000418472.2,ENST00000583353.1	chr18	46905028:46905070:46906034:46906128:46917962:46918012,	46906035	46906128	46906063	46906063	Nonsense_Mutation	C	A	p.E87*
UCEC	TCGA-A5-A0GP-01	DYM	ENST00000269445.6,ENST00000579058.1,ENST00000578596.1,ENST00000418472.2,ENST00000583353.1	chr18	46905028:46905070:46906034:46906128:46917962:46918012,	46906035	46906128	46906063	46906063	Nonsense_Mutation	C	A	p.E87*
UCEC	TCGA-B5-A0JY-01	MBD2	ENST00000256429.3	chr18	51691058:51691070:51692445:51692536:51714083:51714207,51691058:51691070:51692445:51692536:51715243:51715381,	51692446	51692536	51692488	51692488	Nonsense_Mutation	C	A	p.E297*
UCEC	TCGA-AP-A0LM-01	MBD2	ENST00000256429.3	chr18	51691058:51691070:51692445:51692536:51714083:51714207,51691058:51691070:51692445:51692536:51715243:51715381,	51692446	51692536	51692512	51692512	Nonsense_Mutation	C	A	p.G289*
UCEC	TCGA-B5-A11E-01	POLI	ENST00000579434.1,ENST00000577612.1,ENST00000580880.1,ENST00000579534.1,ENST00000583136.1,ENST00000577971.1	chr18	51800295:51800460:51804072:51804225:51807036:51807192,	51804073	51804225	51804084	51804084	Nonsense_Mutation	G	T	p.E140*
UCEC	TCGA-BS-A0UF-01	TCF4	ENST00000565908.2,ENST00000566514.1,ENST00000568169.1,ENST00000354452.3,ENST00000568147.1,ENST00000568673.1,ENST00000564343.1,ENST00000565018.2,ENST00000563888.2,ENST00000566279.1,ENST00000564999.1,ENST00000540999.1,ENST00000568740.1,ENST00000566286.1,ENST00000356073.4,ENST00000562543.1,ENST00000537578.1,ENST00000398339.1,ENST00000569357.1,ENST00000567880.1,ENST00000563824.1,ENST00000564403.2	chr18	53128249:53128346:53131306:53131368:53252510:53252583,	53131307	53131368	53131363	53131363	Nonsense_Mutation	C	A	p.E51*
UCEC	TCGA-AP-A0LM-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54483261:54483375:54547174:54547396:54591152:54591339,	54547175	54547396	54547321	54547321	Nonsense_Mutation	C	T	p.R1151*
UCEC	TCGA-B5-A0JY-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204037	56204037	Nonsense_Mutation	C	A	p.E1128*
UCEC	TCGA-AP-A059-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246303	56246303	Nonsense_Mutation	C	A	p.E569*
UCEC	TCGA-AX-A05Z-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56247380	56247380	Nonsense_Mutation	C	A	p.E210*
UCEC	TCGA-D1-A17Q-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56247608	56247608	Nonsense_Mutation	C	A	p.E134*
UCEC	TCGA-AP-A0LM-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56585985	56585985	Nonsense_Mutation	C	T	p.R156*
UCEC	TCGA-AP-A056-01	PHLPP1	ENST00000400316.4,ENST00000497351.1,ENST00000262719.5	chr18	60497267:60497464:60506016:60506142:60527667:60527746,	60506017	60506142	60506128	60506128	Nonsense_Mutation	C	T	p.R117*
UCEC	TCGA-BS-A0UF-01	SERPINB4	ENST00000436264.1,ENST00000498496.1,ENST00000356424.6	chr18	61310394:61310451:61310646:61310837:61311442:61311489,	61310647	61310837	61310773	61310773	Nonsense_Mutation	G	T	p.S15*
UCEC	TCGA-AX-A0J0-01	SERPINB3	ENST00000332821.8,ENST00000283752.5	chr18	61324503:61324646:61325746:61325864:61326632:61326761,	61325747	61325864	61325786	61325786	Nonsense_Mutation	G	A	p.R144*
UCEC	TCGA-AX-A0J0-01	CDH19	ENST00000579658.1,ENST00000262150.2,ENST00000454642.3,ENST00000540086.1	chr18	64211955:64212140:64218330:64218495:64221641:64221761,	64218331	64218495	64218334	64218334	Nonsense_Mutation	C	A	p.E258*
UCEC	TCGA-D1-A17Q-01	TMX3	ENST00000443099.2	chr18	66367641:66367722:66368981:66369027:66377257:66377381,66365168:66365268:66368981:66369027:66377257:66377381,	66368982	66369027	66369004	66369004	Nonsense_Mutation	G	A	p.R97*
UCEC	TCGA-B5-A0JY-01	CCDC102B	ENST00000360242.5,ENST00000358653.5	chr18	66465316:66465418:66503985:66504606:66505942:66506163,	66503986	66504606	66504496	66504496	Nonsense_Mutation	G	T	p.E166*
UCEC	TCGA-BS-A0UV-01	FBXO15	ENST00000269500.5,ENST00000581214.1,ENST00000583443.1,ENST00000419743.2	chr18	71793209:71793336:71796639:71796849:71797650:71797893,	71796640	71796849	71796800	71796800	Nonsense_Mutation	C	A	p.E209*
UCEC	TCGA-AP-A059-01	CNDP2	ENST00000579847.1,ENST00000324262.4,ENST00000583695.1,ENST00000324301.8	chr18	72180811:72180954:72183462:72183627:72185733:72185793,	72183463	72183627	72183481	72183481	Nonsense_Mutation	C	T	p.R308*
UCEC	TCGA-B5-A11E-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000543761.1,ENST00000490210.2	chr18	77096627:77096711:77097278:77097449:77102267:77102366,	77097279	77097449	77097282	77097282	Nonsense_Mutation	C	T	p.R706*
UCEC	TCGA-B5-A11E-01	TCF3	ENST00000593064.1,ENST00000262965.5,ENST00000592628.1,ENST00000587425.1	chr19	1611804:1611848:1615283:1615519:1615684:1615740,	1615284	1615519	1615287	1615287	Nonsense_Mutation	G	A	p.R607*
UCEC	TCGA-B5-A11E-01	TCF3	ENST00000586164.1	chr19	1611804:1611848:1615283:1615484:1615684:1615740,	1615284	1615484	1615287	1615287	Nonsense_Mutation	G	A	p.R607*
UCEC	TCGA-B5-A11E-01	TCF3	ENST00000585855.1	chr19	1612419:1612432:1615283:1615514:1615684:1615740,	1615284	1615514	1615287	1615287	Nonsense_Mutation	G	A	p.R607*
UCEC	TCGA-D1-A17Q-01	PIP5K1C	ENST00000589578.1,ENST00000539785.1,ENST00000537021.1,ENST00000587482.1,ENST00000335312.3	chr19	3661868:3661999:3664819:3664912:3667319:3667351,	3664820	3664912	3664858	3664858	Nonsense_Mutation	G	A	p.R61*
UCEC	TCGA-BS-A0TI-01	TJP3	ENST00000589378.1,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9,ENST00000587912.1	chr19	3708500:3708559:3728601:3728711:3730025:3730128,3728421:3728478:3728601:3728711:3730025:3730128,	3728602	3728711	3728710	3728710	Nonsense_Mutation	C	T	p.Q72*
UCEC	TCGA-BS-A0TI-01	TJP3	ENST00000590545.1	chr19	3728421:3728478:3728571:3728711:3730025:3730128,	3728572	3728711	3728710	3728710	Nonsense_Mutation	C	T	p.Q72*
UCEC	TCGA-D1-A17Q-01	PTPRS	ENST00000357368.4,ENST00000587303.1,ENST00000372412.4	chr19	5245786:5246056:5256118:5256130:5258027:5258138,	5256119	5256130	5256125	5256125	Nonsense_Mutation	G	A	p.R238*
UCEC	TCGA-AP-A059-01	PTPRS	ENST00000357368.4,ENST00000587303.1	chr19	5260815:5260833:5262974:5262983:5265018:5265207,	5262975	5262983	5262975	5262975	Nonsense_Mutation	C	A	p.E193*
UCEC	TCGA-D1-A17D-01	SAFB2	ENST00000591120.1	chr19	5613475:5613538:5616138:5616346:5621319:5621407,	5616139	5616346	5616281	5616281	Nonsense_Mutation	G	A	p.R114*
UCEC	TCGA-BS-A0TC-01	SAFB	ENST00000454510.1,ENST00000589863.1,ENST00000538656.1,ENST00000588852.1,ENST00000592224.1,ENST00000433404.1,ENST00000292123.5	chr19	5654071:5654211:5654378:5654467:5657251:5657358,	5654379	5654467	5654384	5654384	Nonsense_Mutation	C	T	p.R558*
UCEC	TCGA-AX-A05Z-01	SAFB	ENST00000454510.1,ENST00000589863.1,ENST00000538656.1,ENST00000588852.1,ENST00000592224.1,ENST00000433404.1,ENST00000292123.5	chr19	5654071:5654211:5654378:5654467:5657251:5657358,	5654379	5654467	5654384	5654384	Nonsense_Mutation	C	T	p.R558*
UCEC	TCGA-AP-A059-01	SH2D3A	ENST00000597687.1,ENST00000245908.6,ENST00000595681.1	chr19	6754984:6755326:6763690:6763827:6767397:6767436,6759604:6759681:6763690:6763827:6767397:6767436,6760648:6760998:6763690:6763827:6767397:6767436,	6763691	6763827	6763741	6763741	Nonsense_Mutation	C	A	p.G7*
UCEC	TCGA-BS-A0UV-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7172300:7172445:7174593:7174742:7184326:7184648,	7174594	7174742	7174603	7174603	Nonsense_Mutation	G	A	p.R372*
UCEC	TCGA-D1-A103-01	CD209	ENST00000315591.8	chr19	7810933:7810973:7812191:7812251:7812351:7812397,	7812192	7812251	7812204	7812204	Nonsense_Mutation	T	A	p.K32*
UCEC	TCGA-B5-A0JY-01	TIMM44	ENST00000600748.1,ENST00000270538.3,ENST00000595831.1	chr19	7999949:8000030:8002911:8003082:8005986:8006082,	8002912	8003082	8002998	8002998	Nonsense_Mutation	C	A	p.E76*
UCEC	TCGA-B5-A11E-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8161824:8161890:8162172:8162298:8165784:8165852,	8162173	8162298	8162290	8162290	Nonsense_Mutation	C	A	p.E1724*
UCEC	TCGA-D1-A103-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8182052:8182175:8182347:8182473:8183780:8183906,	8182348	8182473	8182460	8182460	Nonsense_Mutation	G	T	p.C1117*
UCEC	TCGA-AP-A059-01	PRAM1	ENST00000423345.4,ENST00000255612.3	chr19	8563109:8563173:8563259:8564664:8567448:8567495,	8563260	8564664	8563554	8563554	Nonsense_Mutation	G	A	p.R380*
UCEC	TCGA-AP-A054-01	PRAM1	ENST00000423345.4,ENST00000255612.3	chr19	8563109:8563173:8563259:8564664:8567448:8567495,	8563260	8564664	8564295	8564295	Nonsense_Mutation	G	A	p.Q133*
UCEC	TCGA-DI-A0WH-01	ZNF561	ENST00000424629.1	chr19	9724734:9724779:9727720:9727847:9728296:9728434,9724734:9724779:9727720:9727847:9728766:9728842,9724734:9724779:9727720:9727847:9730107:9730205,	9727721	9727847	9727721	9727721	Nonsense_Mutation	C	A	p.E81*
UCEC	TCGA-DI-A0WH-01	ZNF561	ENST00000443819.1	chr19	9724734:9724779:9727720:9727902:9728766:9728842,	9727721	9727902	9727721	9727721	Nonsense_Mutation	C	A	p.E81*
UCEC	TCGA-B5-A0JY-01	COL5A3	ENST00000264828.3	chr19	10089566:10089656:10089807:10089915:10090039:10090093,	10089808	10089915	10089903	10089903	Nonsense_Mutation	C	A	p.E927*
UCEC	TCGA-AP-A051-01	DNM2	ENST00000355667.6,ENST00000585892.1,ENST00000359692.6	chr19	10906047:10906115:10906736:10906875:10909161:10909238,	10906737	10906875	10906804	10906804	Nonsense_Mutation	G	T	p.E422*
UCEC	TCGA-B5-A11E-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384826	12384826	Nonsense_Mutation	C	A	p.E82*
UCEC	TCGA-BS-A0UV-01	ZNF791	ENST00000458122.3,ENST00000343325.4,ENST00000598225.1,ENST00000597691.1	chr19	12734513:12734640:12735463:12735524:12738534:12738619,	12735464	12735524	12735514	12735514	Nonsense_Mutation	C	T	p.R61*
UCEC	TCGA-D1-A16Q-01	NFIX	ENST00000587260.1,ENST00000397661.2,ENST00000587760.1	chr19	13186348:13186485:13192493:13192669:13201112:13201204,13189426:13189549:13192493:13192669:13201112:13201204,	13192494	13192669	13192667	13192667	Nonsense_Mutation	C	T	p.Q418*
UCEC	TCGA-AP-A0LM-01	TECR	ENST00000598333.1,ENST00000215567.5,ENST00000596953.1,ENST00000594807.1,ENST00000597607.1,ENST00000593637.1	chr19	14640508:14640523:14673336:14673387:14674017:14674069,	14673337	14673387	14673364	14673364	Nonsense_Mutation	G	T	p.E15*
UCEC	TCGA-D1-A103-01	CYP4F3	ENST00000592279.2,ENST00000591058.1,ENST00000585846.1,ENST00000586182.2,ENST00000221307.8	chr19	15760722:15760993:15763378:15763445:15763632:15763762,	15763379	15763445	15763421	15763421	Nonsense_Mutation	G	T	p.E321*
UCEC	TCGA-BS-A0UF-01	CYP4F12	ENST00000549622.1,ENST00000548237.1	chr19	15783899:15783945:15784338:15784537:15789070:15789139,15783899:15783945:15784338:15784537:15791053:15791062,	15784339	15784537	15784426	15784426	Nonsense_Mutation	G	A	p.W29*
UCEC	TCGA-AX-A0J0-01	NWD1	ENST00000379808.3,ENST00000549814.1,ENST00000438489.2,ENST00000524140.2,ENST00000523826.1,ENST00000552788.1,ENST00000518676.1,ENST00000339803.6	chr19	16890153:16890276:16899792:16900001:16902160:16902433,	16899793	16900001	16899872	16899872	Nonsense_Mutation	G	A	p.W802*
UCEC	TCGA-AP-A0LM-01	CPAMD8	ENST00000388925.4,ENST00000443236.1,ENST00000291440.3	chr19	17111223:17111332:17113075:17113160:17115082:17115196,	17113076	17113160	17113107	17113107	Nonsense_Mutation	C	T	p.W300*
UCEC	TCGA-AX-A0J0-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000598517.1,ENST00000593360.1	chr19	17160873:17160986:17163634:17163776:17166670:17166812,	17163635	17163776	17163732	17163732	Nonsense_Mutation	C	A	p.E278*
UCEC	TCGA-B5-A11E-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17424835:17424912:17425146:17425198:17426742:17426804,	17425147	17425198	17425150	17425150	Nonsense_Mutation	C	T	p.R30*
UCEC	TCGA-AX-A0J0-01	PLVAP	ENST00000252590.4	chr19	17471580:17471641:17476094:17476807:17476907:17476960,	17476095	17476807	17476486	17476486	Nonsense_Mutation	G	T	p.S263*
UCEC	TCGA-D1-A103-01	BST2	ENST00000533098.1,ENST00000252593.6	chr19	17514599:17514633:17514937:17514998:17516099:17516116,17514599:17514633:17514937:17514998:17515179:17515246,	17514938	17514998	17514945	17514945	Nonsense_Mutation	G	A	p.R136*
UCEC	TCGA-D1-A15X-01	PGLS	ENST00000252603.2,ENST00000594761.1,ENST00000598811.1	chr19	17628096:17628198:17628518:17628659:17631752:17631839,	17628519	17628659	17628609	17628609	Nonsense_Mutation	C	T	p.R197*
UCEC	TCGA-AX-A0J1-01	IL12RB1	ENST00000593993.2,ENST00000600835.2	chr19	18172990:18173087:18174685:18174820:18177351:18177507,	18174686	18174820	18174743	18174743	Nonsense_Mutation	G	A	p.R521*
UCEC	TCGA-AX-A0J1-01	UPF1	ENST00000262803.5,ENST00000599848.1	chr19	18967685:18967829:18968128:18968342:18971129:18971247,	18968129	18968342	18968261	18968261	Nonsense_Mutation	C	T	p.Q701*
UCEC	TCGA-AP-A056-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359640	19359640	Nonsense_Mutation	C	T	p.R1257*
UCEC	TCGA-AP-A056-01	ZNF253	ENST00000589717.1	chr19	19976726:19976808:19989289:19989416:19990859:19990955,	19989290	19989416	19989320	19989320	Nonsense_Mutation	G	T	p.E12*
UCEC	TCGA-AX-A05Z-01	ZNF93	ENST00000586021.1,ENST00000591366.1,ENST00000592160.1,ENST00000343769.5	chr19	20011869:20011900:20026088:20026215:20027368:20027464,	20026089	20026215	20026119	20026119	Nonsense_Mutation	G	T	p.E12*
UCEC	TCGA-AX-A0J0-01	ZNF737	ENST00000427401.4,ENST00000596797.1	chr19	20735280:20735376:20736514:20736641:20748443:20748541,	20736515	20736641	20736611	20736611	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-AP-A056-01	ZNF85	ENST00000345030.6	chr19	21106206:21106209:21116829:21116956:21117754:21117853,21106206:21106209:21116829:21116956:21131549:21131597,	21116830	21116956	21116860	21116860	Nonsense_Mutation	G	T	p.E12*
UCEC	TCGA-AP-A0LM-01	ZNF430	ENST00000599548.1,ENST00000261560.5,ENST00000594110.1	chr19	21205594:21205687:21216261:21216388:21216891:21216990,	21216262	21216388	21216292	21216292	Nonsense_Mutation	G	T	p.E43*
UCEC	TCGA-AP-A056-01	ZNF43	ENST00000354959.4	chr19	22000719:22000788:22001896:22002023:22025946:22026128,22000719:22000788:22001896:22002023:22018837:22018989,	22001897	22002023	22001993	22001993	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-D1-A103-01	ZNF91	ENST00000397082.2	chr19	23556543:23556639:23557439:23557566:23578126:23578220,23544926:23545527:23557439:23557566:23578126:23578220,	23557440	23557566	23557536	23557536	Nonsense_Mutation	C	A	p.E21*
UCEC	TCGA-AP-A0LM-01	ZNF675	ENST00000359788.4,ENST00000601010.1,ENST00000599168.1,ENST00000597074.1,ENST00000596211.1,ENST00000600313.1	chr19	23844915:23845011:23845833:23845960:23869832:23869942,	23845834	23845960	23845930	23845930	Nonsense_Mutation	C	A	p.E12*
UCEC	TCGA-D1-A17Q-01	URI1	ENST00000542441.2,ENST00000574176.1,ENST00000574110.1,ENST00000360605.4,ENST00000392271.1,ENST00000312051.6	chr19	30496557:30496615:30498376:30498545:30499911:30499926,	30498377	30498545	30498484	30498484	Nonsense_Mutation	G	T	p.E209*
UCEC	TCGA-D1-A103-01	TDRD12	ENST00000444215.2,ENST00000421545.2	chr19	33229761:33229898:33233686:33233806:33239381:33239437,	33233687	33233806	33233787	33233787	Nonsense_Mutation	C	T	p.R141*
UCEC	TCGA-BS-A0UV-01	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000590597.2	chr19	33422334:33422477:33424356:33424575:33428536:33428579,	33424357	33424575	33424435	33424435	Nonsense_Mutation	C	A	p.E270*
UCEC	TCGA-BS-A0UV-01	WDR88	ENST00000355868.3,ENST00000361680.2	chr19	33642086:33642216:33647260:33647448:33651319:33651402,	33647261	33647448	33647373	33647373	Nonsense_Mutation	C	T	p.R308*
UCEC	TCGA-B5-A11E-01	LSM14A	ENST00000540746.2,ENST00000433627.5	chr19	34710613:34710782:34712411:34712643:34718269:34718522,34710613:34710782:34712411:34712643:34717312:34717369,	34712412	34712643	34712437	34712437	Nonsense_Mutation	G	T	p.E388*
UCEC	TCGA-AX-A05Z-01	UPK1A	ENST00000222275.2	chr19	36164372:36164447:36166741:36166921:36168713:36168759,	36166742	36166921	36166745	36166745	Nonsense_Mutation	G	T	p.E158*
UCEC	TCGA-BS-A0UV-01	ALKBH6	ENST00000497999.1	chr19	36501795:36501947:36503902:36503991:36504245:36504324,	36503903	36503991	36503928	36503928	Nonsense_Mutation	G	A	p.R68*
UCEC	TCGA-BS-A0UV-01	ALKBH6	ENST00000490986.1,ENST00000252984.7,ENST00000590666.1,ENST00000475223.1,ENST00000468004.1,ENST00000485128.1,ENST00000378875.3,ENST00000392183.3,ENST00000466196.1	chr19	36502305:36502366:36503922:36503991:36504245:36504324,	36503923	36503991	36503928	36503928	Nonsense_Mutation	G	A	p.R68*
UCEC	TCGA-B5-A0JY-01	MAP4K1	ENST00000589130.1,ENST00000591921.1,ENST00000396857.2,ENST00000591517.1	chr19	39087987:39088234:39090564:39090625:39090716:39090793,	39090565	39090625	39090565	39090565	Nonsense_Mutation	C	A	p.G557*
UCEC	TCGA-AX-A05Z-01	EIF3K	ENST00000592558.1	chr19	39116689:39116742:39123069:39123136:39123240:39123318,39116689:39116742:39123069:39123136:39125632:39125661,	39123070	39123136	39123130	39123130	Nonsense_Mutation	C	T	p.R139*
UCEC	TCGA-B5-A11E-01	CAPN12	ENST00000595177.1	chr19	39224958:39225029:39225452:39225510:39226009:39226045,39221807:39221863:39225452:39225510:39226009:39226045,	39225453	39225510	39225504	39225504	Nonsense_Mutation	C	A	p.E565*
UCEC	TCGA-B5-A11E-01	CAPN12	ENST00000597716.1	chr19	39224781:39224844:39224958:39225510:39226009:39226045,	39224959	39225510	39225504	39225504	Nonsense_Mutation	C	A	p.E565*
UCEC	TCGA-B5-A0JY-01	PLEKHG2	ENST00000458508.2,ENST00000205135.4,ENST00000409794.3,ENST00000425673.1	chr19	39911922:39911939:39912754:39912928:39913371:39913468,	39912755	39912928	39912917	39912917	Nonsense_Mutation	C	T	p.R556*
UCEC	TCGA-AP-A0LT-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914682	39914682	Nonsense_Mutation	C	T	p.Q838*
UCEC	TCGA-D1-A167-01	ZNF780B	ENST00000598845.1	chr19	40553312:40553377:40554576:40554703:40556230:40556284,40553312:40553380:40554576:40554703:40556230:40556284,	40554577	40554703	40554703	40554703	Nonsense_Mutation	C	A	p.G4*
UCEC	TCGA-B5-A0JY-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000396819.3,ENST00000598256.1,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000602240.1	chr19	41116437:41116563:41117057:41117300:41117764:41117828,	41117058	41117300	41117096	41117096	Nonsense_Mutation	C	T	p.R684*
UCEC	TCGA-B5-A0JY-01	LTBP4	ENST00000597816.1,ENST00000599724.1,ENST00000318809.7	chr19	41120220:41120352:41125251:41125398:41128305:41128310,41120220:41120352:41125251:41125398:41129508:41129538,	41125252	41125398	41125350	41125350	Nonsense_Mutation	G	T	p.E1123*
UCEC	TCGA-D1-A103-01	NUMBL	ENST00000600967.1	chr19	41179456:41179554:41183136:41183326:41186821:41186962,41179348:41179551:41183136:41183326:41186821:41186962,	41183137	41183326	41183161	41183161	Nonsense_Mutation	G	A	p.R236*
UCEC	TCGA-B5-A11E-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42793332:42793558:42793999:42794103:42794384:42794813,	42794000	42794103	42794092	42794092	Nonsense_Mutation	G	T	p.E485*
UCEC	TCGA-AX-A0J1-01	TMEM145	ENST00000598766.1,ENST00000301204.3	chr19	42821021:42821115:42821860:42822033:42824468:42824589,	42821861	42822033	42821975	42821975	Nonsense_Mutation	C	T	p.R339*
UCEC	TCGA-AX-A05Z-01	PSG9	ENST00000270077.3	chr19	43762353:43762608:43763008:43763287:43771935:43772301,43762353:43762608:43763008:43763287:43766011:43766290,	43763009	43763287	43763081	43763081	Nonsense_Mutation	C	A	p.G306*
UCEC	TCGA-AX-A063-01	PHLDB3	ENST00000595498.1,ENST00000292140.5	chr19	43979254:43979696:43982198:43982284:43983528:43983643,	43982199	43982284	43982215	43982215	Nonsense_Mutation	A	T	p.L591*
UCEC	TCGA-AP-A059-01	RELB	ENST00000221452.8,ENST00000505236.1,ENST00000540120.1	chr19	45515193:45515534:45525310:45525468:45528586:45528678,	45525311	45525468	45525373	45525373	Nonsense_Mutation	G	A	p.W189*
UCEC	TCGA-D1-A103-01	FOSB	ENST00000417353.2	chr19	45971692:45971970:45973886:45974207:45975808:45975811,	45973887	45974207	45973967	45973967	Nonsense_Mutation	G	A	p.W69*
UCEC	TCGA-AP-A056-01	QPCTL	ENST00000591606.1	chr19	46196670:46196814:46198890:46198976:46201804:46201957,	46198891	46198976	46198903	46198903	Nonsense_Mutation	C	A	p.S187*
UCEC	TCGA-AP-A056-01	QPCTL	ENST00000012049.5	chr19	46196670:46196814:46198694:46198976:46201804:46201957,	46198695	46198976	46198903	46198903	Nonsense_Mutation	C	A	p.S187*
UCEC	TCGA-AX-A0J1-01	SYMPK	ENST00000593504.1,ENST00000598896.1,ENST00000600237.1,ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46351009:46351259:46352007:46352134:46355569:46355643,	46352008	46352134	46352130	46352130	Nonsense_Mutation	G	A	p.R102*
UCEC	TCGA-AP-A0LQ-01	HIF3A	ENST00000600383.1,ENST00000420102.2,ENST00000377670.4,ENST00000300862.3,ENST00000244303.6,ENST00000339613.2	chr19	46832463:46832735:46834412:46834530:46838161:46838243,	46834413	46834530	46834437	46834437	Nonsense_Mutation	C	T	p.R433*
UCEC	TCGA-AP-A0LM-01	SAE1	ENST00000270225.7,ENST00000596995.1,ENST00000540850.1,ENST00000598840.1	chr19	47683402:47683560:47700489:47700634:47706927:47706997,47673077:47673180:47700489:47700634:47706927:47706997,	47700490	47700634	47700573	47700573	Nonsense_Mutation	C	T	p.R273*
UCEC	TCGA-D1-A17Q-01	ZNF541	ENST00000448976.1,ENST00000263351.5	chr19	48041398:48041696:48042961:48043135:48043432:48043592,48036165:48036229:48042961:48043135:48043432:48043592,48025110:48025251:48042961:48043135:48043432:48043592,	48042962	48043135	48043096	48043096	Nonsense_Mutation	G	T	p.C478*
UCEC	TCGA-AP-A051-01	TULP2	ENST00000221399.3	chr19	49388704:49388817:49391206:49391518:49392766:49392888,	49391207	49391518	49391446	49391446	Nonsense_Mutation	C	A	p.E237*
UCEC	TCGA-D1-A1NX-01	KLK7	ENST00000597707.1	chr19	51483541:51483743:51485022:51485170:51485582:51485713,51483541:51483743:51485022:51485170:51487106:51487294,	51485023	51485170	51485078	51485078	Nonsense_Mutation	C	A	p.G56*
UCEC	TCGA-AX-A05Z-01	ZNF534	ENST00000433050.1,ENST00000301085.4	chr19	52934666:52934742:52937207:52937334:52954439:52955192,52934666:52934742:52937207:52937334:52938333:52938462,	52937208	52937334	52937238	52937238	Nonsense_Mutation	G	T	p.E16*
UCEC	TCGA-AX-A05Z-01	ZNF534	ENST00000332323.6	chr19	52934666:52934742:52937207:52937373:52938333:52938462,	52937208	52937373	52937238	52937238	Nonsense_Mutation	G	T	p.E16*
UCEC	TCGA-BS-A0UF-01	ZNF534	ENST00000433050.1,ENST00000301085.4	chr19	52934666:52934742:52937207:52937334:52954439:52955192,52934666:52934742:52937207:52937334:52938333:52938462,	52937208	52937334	52937238	52937238	Nonsense_Mutation	G	T	p.E16*
UCEC	TCGA-BS-A0UF-01	ZNF534	ENST00000332323.6	chr19	52934666:52934742:52937207:52937373:52938333:52938462,	52937208	52937373	52937238	52937238	Nonsense_Mutation	G	T	p.E16*
UCEC	TCGA-D1-A17Q-01	ZNF534	ENST00000433050.1,ENST00000301085.4	chr19	52934666:52934742:52937207:52937334:52954439:52955192,52934666:52934742:52937207:52937334:52938333:52938462,	52937208	52937334	52937238	52937238	Nonsense_Mutation	G	T	p.E16*
UCEC	TCGA-D1-A17Q-01	ZNF534	ENST00000332323.6	chr19	52934666:52934742:52937207:52937373:52938333:52938462,	52937208	52937373	52937238	52937238	Nonsense_Mutation	G	T	p.E16*
UCEC	TCGA-B5-A0JY-01	ZNF28	ENST00000457749.2	chr19	53308397:53308515:53311259:53311386:53321196:53321281,53304633:53304955:53311259:53311386:53321196:53321281,	53311260	53311386	53311356	53311356	Nonsense_Mutation	C	A	p.E16*
UCEC	TCGA-D1-A103-01	ZNF525	ENST00000475179.1	chr19	53875467:53875549:53879022:53879149:53883974:53884302,53875467:53875549:53879022:53879149:53888222:53888484,	53879023	53879149	53879053	53879053	Nonsense_Mutation	G	T	p.E16*
UCEC	TCGA-D1-A174-01	NDUFA3	ENST00000391763.3,ENST00000484103.1,ENST00000419113.1,ENST00000485876.1,ENST00000303553.5	chr19	54608908:54609010:54609240:54609318:54610117:54610268,54606421:54606496:54609240:54609318:54611746:54611840,54606424:54606496:54609240:54609318:54610117:54610268,	54609241	54609318	54609272	54609272	Nonsense_Mutation	C	T	p.Q43*
UCEC	TCGA-AP-A056-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450266	55450266	Nonsense_Mutation	C	A	p.E641*
UCEC	TCGA-AP-A059-01	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1	chr19	55501389:55501560:55501869:55502040:55505636:55505807,	55501870	55502040	55501892	55501892	Nonsense_Mutation	G	T	p.E854*
UCEC	TCGA-AP-A0LM-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118187	58118187	Nonsense_Mutation	G	T	p.E432*
UCEC	TCGA-D1-A103-01	MZF1	ENST00000599369.1,ENST00000215057.2	chr19	59073299:59074871:59080643:59080764:59080882:59080953,	59080644	59080764	59080675	59080675	Nonsense_Mutation	C	T	p.W247*
UCEC	TCGA-B5-A0JY-01	PTPRA	ENST00000425918.2,ENST00000399903.2,ENST00000358719.4,ENST00000356147.3,ENST00000380393.3,ENST00000318266.5,ENST00000216877.6	chr20	2968983:2969120:2985701:2985792:2987989:2988066,	2985702	2985792	2985771	2985771	Nonsense_Mutation	C	T	p.R270*
UCEC	TCGA-AX-A05Z-01	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3545994:3546079:3553377:3553598:3556473:3556595,	3553378	3553598	3553580	3553580	Nonsense_Mutation	G	T	p.E692*
UCEC	TCGA-AP-A0LM-01	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3575125:3575219:3577023:3577076:3578552:3578647,	3577024	3577076	3577040	3577040	Nonsense_Mutation	C	T	p.R1145*
UCEC	TCGA-BS-A0UV-01	ATRN	ENST00000262919.5	chr20	3614957:3615036:3619474:3619582:3624800:3624915,	3619475	3619582	3619484	3619484	Nonsense_Mutation	C	T	p.R1318*
UCEC	TCGA-AX-A05Z-01	ATRN	ENST00000262919.5	chr20	3614957:3615036:3619474:3619582:3624800:3624915,	3619475	3619582	3619484	3619484	Nonsense_Mutation	C	T	p.R1318*
UCEC	TCGA-D1-A103-01	GPCPD1	ENST00000473797.1,ENST00000379019.4,ENST00000481038.1	chr20	5548166:5548206:5550792:5550885:5554560:5554615,	5550793	5550885	5550811	5550811	Nonsense_Mutation	A	T	p.C377*
UCEC	TCGA-AX-A0J0-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904270	5904270	Nonsense_Mutation	G	T	p.E494*
UCEC	TCGA-AP-A0LM-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2	chr20	9440281:9440457:9449217:9449319:9453436:9453494,	9449218	9449319	9449234	9449234	Nonsense_Mutation	C	T	p.R1077*
UCEC	TCGA-B5-A11N-01	SEL1L2	ENST00000492548.1,ENST00000475649.1	chr20	13830836:13830965:13845812:13845887:13850148:13850236,	13845813	13845887	13845828	13845828	Nonsense_Mutation	G	A	p.R544*
UCEC	TCGA-B5-A0JY-01	PCSK2	ENST00000470007.1,ENST00000262545.2,ENST00000377899.1	chr20	17240884:17240989:17338971:17339085:17341176:17341285,	17338972	17339085	17339014	17339014	Nonsense_Mutation	C	T	p.R109*
UCEC	TCGA-B5-A0JY-01	DSTN	ENST00000474024.1,ENST00000246069.7	chr20	17581501:17581690:17585199:17585276:17587681:17587867,	17585200	17585276	17585273	17585273	Nonsense_Mutation	C	T	p.Q129*
UCEC	TCGA-BS-A0UF-01	POLR3F	ENST00000377603.4,ENST00000489753.1,ENST00000462997.1	chr20	18454034:18454102:18455718:18455831:18460681:18460825,	18455719	18455831	18455766	18455766	Nonsense_Mutation	G	T	p.E122*
UCEC	TCGA-AP-A051-01	RIN2	ENST00000255006.6,ENST00000440354.2,ENST00000484638.1	chr20	19972811:19972943:19977322:19977486:19981256:19981992,	19977323	19977486	19977394	19977394	Nonsense_Mutation	C	T	p.R758*
UCEC	TCGA-BS-A0UV-01	NAA20	ENST00000480550.1	chr20	19998002:19998093:20006312:20006411:20007427:20007563,	20006313	20006411	20006396	20006396	Nonsense_Mutation	G	T	p.E52*
UCEC	TCGA-AX-A05Z-01	NAA20	ENST00000310450.4	chr20	20006320:20006411:20007427:20007563:20013151:20013297,20006320:20006411:20007427:20007563:20013745:20014273,	20007428	20007563	20007508	20007508	Nonsense_Mutation	C	T	p.R84*
UCEC	TCGA-BS-A0UF-01	RALGAPA2	ENST00000202677.7,ENST00000430436.1	chr20	20565508:20565599:20569911:20570009:20571820:20571958,	20569912	20570009	20569982	20569982	Nonsense_Mutation	G	A	p.R607*
UCEC	TCGA-B5-A11J-01	RALGAPA2	ENST00000202677.7,ENST00000424981.1	chr20	20616061:20616261:20618006:20618145:20620428:20620544,	20618007	20618145	20618076	20618076	Nonsense_Mutation	G	A	p.R246*
UCEC	TCGA-AP-A0LM-01	GINS1	ENST00000429262.2	chr20	25388366:25388531:25394425:25394490:25397739:25397838,	25394426	25394490	25394432	25394432	Nonsense_Mutation	G	T	p.G28*
UCEC	TCGA-B5-A11E-01	TTLL9	ENST00000375934.4	chr20	30467631:30467700:30474998:30475042:30486275:30486368,	30474999	30475042	30475041	30475041	Nonsense_Mutation	C	T	p.R38*
UCEC	TCGA-AX-A0J0-01	DNMT3B	ENST00000375623.4	chr20	31376659:31376818:31379406:31379514:31383214:31383340,	31379407	31379514	31379488	31379488	Nonsense_Mutation	C	T	p.R299*
UCEC	TCGA-AX-A05Z-01	ITCH	ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33077626:33077731:33080305:33080402:33092135:33092208,	33080306	33080402	33080315	33080315	Nonsense_Mutation	G	T	p.E777*
UCEC	TCGA-AP-A0LM-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33328530	33328530	Nonsense_Mutation	C	A	p.E1844*
UCEC	TCGA-AX-A05Z-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33328767	33328767	Nonsense_Mutation	C	A	p.E1765*
UCEC	TCGA-B5-A11E-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2	chr20	33603810:33603942:33608992:33609159:33622925:33623094,	33608993	33609159	33609001	33609001	Nonsense_Mutation	G	A	p.R404*
UCEC	TCGA-B5-A11E-01	TRPC4AP	ENST00000451813.2	chr20	33603810:33603942:33608992:33609135:33622925:33623094,	33608993	33609135	33609001	33609001	Nonsense_Mutation	G	A	p.R404*
UCEC	TCGA-AP-A051-01	EDEM2	ENST00000541621.1,ENST00000374492.3,ENST00000374491.3,ENST00000540582.1,ENST00000542871.1	chr20	33711692:33711837:33714053:33714178:33719444:33719586,	33714054	33714178	33714066	33714066	Nonsense_Mutation	C	T	p.W319*
UCEC	TCGA-BS-A0UV-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34064273:34064420:34065695:34065926:34067055:34067249,	34065696	34065926	34065909	34065909	Nonsense_Mutation	C	A	p.S206*
UCEC	TCGA-B5-A11R-01	CPNE1	ENST00000439669.1	chr20	34219866:34219947:34220084:34220170:34220232:34220307,	34220085	34220170	34220147	34220147	Nonsense_Mutation	G	A	p.Q137*
UCEC	TCGA-B5-A11R-01	CPNE1	ENST00000317677.5,ENST00000414664.1,ENST00000401607.2,ENST00000420363.1,ENST00000434795.1,ENST00000397442.1,ENST00000317619.3,ENST00000352393.4,ENST00000439806.2,ENST00000483495.1,ENST00000440240.1,ENST00000397446.1,ENST00000397443.1,ENST00000437340.1,ENST00000397445.1	chr20	34219866:34219947:34220084:34220156:34220232:34220307,	34220085	34220156	34220147	34220147	Nonsense_Mutation	G	A	p.Q137*
UCEC	TCGA-AX-A0J0-01	DSN1	ENST00000438549.1	chr20	35396371:35396445:35399275:35399427:35402064:35402123,	35399276	35399427	35399324	35399324	Nonsense_Mutation	C	A	p.E103*
UCEC	TCGA-AX-A0J0-01	DSN1	ENST00000373740.3	chr20	35396371:35396445:35399275:35399380:35399827:35399876,	35399276	35399380	35399324	35399324	Nonsense_Mutation	C	A	p.E103*
UCEC	TCGA-AX-A0J0-01	DSN1	ENST00000373750.4,ENST00000447406.1,ENST00000426836.1,ENST00000373745.3	chr20	35396371:35396445:35399275:35399596:35402064:35402123,35396371:35396445:35399275:35399596:35399827:35399876,	35399276	35399596	35399324	35399324	Nonsense_Mutation	C	A	p.E103*
UCEC	TCGA-AX-A0J0-01	DSN1	ENST00000480153.1	chr20	35396371:35396445:35399275:35399876:35402064:35402123,	35399276	35399876	35399324	35399324	Nonsense_Mutation	C	A	p.E103*
UCEC	TCGA-AP-A0LM-01	LPIN3	ENST00000373257.3	chr20	39978413:39978534:39978694:39979037:39980460:39980560,	39978695	39979037	39978973	39978973	Nonsense_Mutation	G	A	p.W346*
UCEC	TCGA-D1-A16X-01	STK4	ENST00000396731.4,ENST00000372801.1,ENST00000474717.1,ENST00000372806.3	chr20	43607083:43607212:43610469:43610584:43615772:43615937,	43610470	43610584	43610567	43610567	Nonsense_Mutation	C	T	p.R115*
UCEC	TCGA-B5-A11E-01	DNTTIP1	ENST00000435014.1,ENST00000372622.3,ENST00000415790.1	chr20	44422603:44422656:44423983:44424082:44429712:44429781,	44423984	44424082	44424011	44424011	Nonsense_Mutation	C	T	p.R101*
UCEC	TCGA-AP-A0LM-01	SLC13A3	ENST00000472148.1,ENST00000396360.1	chr20	45212210:45212308:45217798:45217894:45221042:45221085,	45217799	45217894	45217885	45217885	Nonsense_Mutation	C	A	p.E140*
UCEC	TCGA-B5-A11E-01	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000497062.2	chr20	45771697:45771787:45797786:45797845:45801354:45801515,	45797787	45797845	45797842	45797842	Nonsense_Mutation	T	G	p.L345*
UCEC	TCGA-AP-A051-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45875122	45875122	Nonsense_Mutation	C	A	p.G546*
UCEC	TCGA-AP-A0LM-01	PREX1	ENST00000482556.1,ENST00000396220.1,ENST00000371941.3	chr20	47266533:47266744:47267431:47267593:47267933:47268121,	47267432	47267593	47267434	47267434	Nonsense_Mutation	C	A	p.E939*
UCEC	TCGA-BS-A0TC-01	ARFGEF2	ENST00000371917.4	chr20	47588862:47588962:47589681:47589821:47591302:47591411,	47589682	47589821	47589780	47589780	Nonsense_Mutation	C	T	p.Q542*
UCEC	TCGA-D1-A17Q-01	ARFGEF2	ENST00000371917.4	chr20	47641849:47642018:47645066:47645205:47648585:47648703,	47645067	47645205	47645144	47645144	Nonsense_Mutation	C	T	p.R1668*
UCEC	TCGA-B5-A0JY-01	CSE1L	ENST00000262982.2,ENST00000396192.3	chr20	47679738:47679881:47682728:47682830:47682901:47683047,	47682729	47682830	47682765	47682765	Nonsense_Mutation	C	T	p.R89*
UCEC	TCGA-AP-A0LM-01	STAU1	ENST00000371828.3,ENST00000340954.7,ENST00000371802.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47736518:47736665:47739628:47739772:47740911:47741124,	47739629	47739772	47739727	47739727	Nonsense_Mutation	G	A	p.R290*
UCEC	TCGA-AP-A0LM-01	STAU1	ENST00000371792.1	chr20	47736518:47736665:47739628:47739766:47740911:47741124,	47739629	47739766	47739727	47739727	Nonsense_Mutation	G	A	p.R290*
UCEC	TCGA-D1-A17Q-01	DDX27	ENST00000371764.4,ENST00000462328.1,ENST00000484427.1	chr20	47837988:47838135:47839493:47839553:47839804:47839970,	47839494	47839553	47839533	47839533	Nonsense_Mutation	C	T	p.R125*
UCEC	TCGA-B5-A0JY-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47887421	47887421	Nonsense_Mutation	G	A	p.R310*
UCEC	TCGA-AP-A0LP-01	UBE2V1	ENST00000340309.3,ENST00000371677.3,ENST00000486653.1,ENST00000371674.3	chr20	48697660:48699451:48700665:48700791:48713208:48713357,	48700666	48700791	48700776	48700776	Nonsense_Mutation	G	A	p.R86*
UCEC	TCGA-BS-A0UF-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49196239:49196463:49197801:49197997:49199228:49199522,	49197802	49197997	49197851	49197851	Nonsense_Mutation	C	T	p.R380*
UCEC	TCGA-AP-A051-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49196239:49196463:49197801:49197997:49199228:49199522,	49197802	49197997	49197851	49197851	Nonsense_Mutation	C	T	p.R380*
UCEC	TCGA-D1-A103-01	NFATC2	ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000610033.1	chr20	50007945:50007988:50048603:50049293:50051724:50051851,50015179:50015267:50048603:50049293:50051724:50051851,	50048604	50049293	50048730	50048730	Nonsense_Mutation	G	A	p.Q866*
UCEC	TCGA-BS-A0UV-01	BCAS1	ENST00000434986.2	chr20	52561464:52561535:52569970:52570234:52591927:52591969,52561464:52561535:52569970:52570234:52583444:52583612,52561464:52561535:52569970:52570234:52601825:52601972,	52569971	52570234	52570152	52570152	Nonsense_Mutation	G	A	p.R163*
UCEC	TCGA-AP-A051-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208570	55208570	Nonsense_Mutation	C	T	p.R250*
UCEC	TCGA-D1-A103-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099210	56099210	Nonsense_Mutation	C	A	p.E18*
UCEC	TCGA-AP-A056-01	PHACTR3	ENST00000361300.4,ENST00000359926.3,ENST00000492611.1,ENST00000355648.4,ENST00000371015.1,ENST00000395636.2,ENST00000541461.1,ENST00000395639.4	chr20	58415427:58415485:58416449:58416590:58420243:58420320,	58416450	58416590	58416501	58416501	Nonsense_Mutation	C	T	p.R500*
UCEC	TCGA-B5-A0JY-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452478	58452478	Nonsense_Mutation	C	A	p.E1038*
UCEC	TCGA-B5-A0JY-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467092	58467092	Nonsense_Mutation	C	A	p.E773*
UCEC	TCGA-BS-A0UV-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000461538.1,ENST00000371001.2	chr20	58476716:58476865:58482418:58482479:58486804:58486900,	58482419	58482479	58482446	58482446	Nonsense_Mutation	C	A	p.E336*
UCEC	TCGA-AP-A0LM-01	LSM14B	ENST00000253001.4,ENST00000279068.6	chr20	60706411:60706562:60708345:60708531:60709218:60710434,	60708346	60708531	60708446	60708446	Nonsense_Mutation	C	T	p.R363*
UCEC	TCGA-B5-A11E-01	LAMA5	ENST00000252999.3,ENST00000370691.2	chr20	60885957:60886150:60886217:60886363:60886456:60886592,	60886218	60886363	60886294	60886294	Nonsense_Mutation	G	A	p.R3338*
UCEC	TCGA-B5-A11E-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839375	62839375	Nonsense_Mutation	G	T	p.E276*
UCEC	TCGA-AX-A0J1-01	PCMTD2	ENST00000299468.7,ENST00000308824.6	chr20	62887196:62887223:62891294:62891625:62895781:62895879,	62891295	62891625	62891451	62891451	Nonsense_Mutation	G	T	p.E45*
UCEC	TCGA-BS-A0UF-01	USP25	ENST00000400183.2,ENST00000351097.5,ENST00000285681.2	chr21	17102495:17102757:17135209:17135287:17138315:17138460,	17135210	17135287	17135240	17135240	Nonsense_Mutation	G	T	p.E26*
UCEC	TCGA-A5-A0GP-01	JAM2	ENST00000400532.1,ENST00000425221.2,ENST00000480456.1	chr21	27078290:27078398:27081745:27081761:27084651:27084694,	27081746	27081761	27081748	27081748	Nonsense_Mutation	G	T	p.E270*
UCEC	TCGA-BS-A0UV-01	JAM2	ENST00000400532.1,ENST00000425221.2,ENST00000480456.1	chr21	27078290:27078398:27081745:27081761:27084651:27084694,	27081746	27081761	27081748	27081748	Nonsense_Mutation	G	T	p.E270*
UCEC	TCGA-D1-A103-01	GABPA	ENST00000400075.3	chr21	27107699:27107889:27113883:27113986:27117520:27117665,	27113884	27113986	27113922	27113922	Nonsense_Mutation	G	T	p.E5*
UCEC	TCGA-B5-A0JY-01	APP	ENST00000354192.3,ENST00000348990.5,ENST00000448388.2,ENST00000359726.3,ENST00000439274.2,ENST00000448850.1,ENST00000440126.3,ENST00000415997.1,ENST00000357903.3,ENST00000358918.3,ENST00000346798.3	chr21	27347502:27347541:27348266:27348341:27354656:27354790,	27348267	27348341	27348303	27348303	Nonsense_Mutation	C	A	p.E324*
UCEC	TCGA-AP-A056-01	USP16	ENST00000399976.2,ENST00000535828.1,ENST00000474835.1,ENST00000399975.3,ENST00000334352.4	chr21	30422412:30422499:30426122:30426279:30426386:30426561,	30426123	30426279	30426135	30426135	Nonsense_Mutation	G	T	p.E736*
UCEC	TCGA-B5-A11N-01	TIAM1	ENST00000286827.3	chr21	32567539:32567621:32575223:32575328:32582360:32582531,	32575224	32575328	32575277	32575277	Nonsense_Mutation	C	A	p.E814*
UCEC	TCGA-D1-A17Q-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34921988	34921988	Nonsense_Mutation	G	T	p.E151*
UCEC	TCGA-BG-A0VZ-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34925673	34925673	Nonsense_Mutation	C	T	p.R374*
UCEC	TCGA-AX-A05Z-01	CRYZL1	ENST00000381554.3,ENST00000361534.2,ENST00000290244.5,ENST00000452420.1,ENST00000437996.1,ENST00000381540.3,ENST00000441940.1,ENST00000420072.1,ENST00000429827.1	chr21	34968036:34968142:34969585:34969707:34971455:34971554,	34969586	34969707	34969701	34969701	Nonsense_Mutation	A	C	p.L228*
UCEC	TCGA-B5-A0JY-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37711071:37711219:37713696:37713844:37716876:37717005,	37713697	37713844	37713713	37713713	Nonsense_Mutation	G	T	p.E209*
UCEC	TCGA-BS-A0UF-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741410	37741410	Nonsense_Mutation	G	T	p.E582*
UCEC	TCGA-B5-A0JY-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741863	37741863	Nonsense_Mutation	G	T	p.E733*
UCEC	TCGA-D1-A103-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000481605.1,ENST00000399017.2	chr21	38516859:38516945:38519780:38519903:38520845:38520947,	38519781	38519903	38519805	38519805	Nonsense_Mutation	G	T	p.E640*
UCEC	TCGA-D1-A16X-01	TTC3	ENST00000438055.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38524192:38524329:38525250:38525577:38528956:38529208,	38525251	38525577	38525425	38525425	Nonsense_Mutation	G	T	p.E1*
UCEC	TCGA-AX-A0J1-01	TTC3	ENST00000438055.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38525536:38525577:38528956:38529208:38532000:38532047,	38528957	38529208	38529138	38529138	Nonsense_Mutation	G	A	p.W974*
UCEC	TCGA-AX-A0J0-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38537934	38537934	Nonsense_Mutation	G	T	p.E1140*
UCEC	TCGA-D1-A167-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38538120	38538120	Nonsense_Mutation	C	T	p.R1202*
UCEC	TCGA-B5-A11E-01	ETS2	ENST00000432278.1,ENST00000360214.3,ENST00000360938.3,ENST00000456966.1	chr21	40181958:40182030:40184926:40185038:40186196:40186316,	40184927	40185038	40185002	40185002	Nonsense_Mutation	C	T	p.Q50*
UCEC	TCGA-BS-A0UV-01	ETS2	ENST00000432278.1,ENST00000360214.3,ENST00000360938.3,ENST00000456966.1	chr21	40181958:40182030:40184926:40185038:40186196:40186316,	40184927	40185038	40185005	40185005	Nonsense_Mutation	G	T	p.E51*
UCEC	TCGA-B5-A0JY-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000473813.1,ENST00000424441.1	chr21	40587162:40587288:40590077:40590198:40590430:40590586,	40590078	40590198	40590106	40590106	Nonsense_Mutation	G	A	p.R1211*
UCEC	TCGA-BS-A0UV-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40601237:40601362:40604102:40604210:40604298:40604424,	40604103	40604210	40604198	40604198	Nonsense_Mutation	G	A	p.R969*
UCEC	TCGA-AP-A051-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1,ENST00000445668.1,ENST00000445245.1,ENST00000412604.1,ENST00000430093.1	chr21	40608644:40608710:40610404:40610499:40619626:40619758,	40610405	40610499	40610455	40610455	Nonsense_Mutation	C	A	p.G510*
UCEC	TCGA-BS-A0UV-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40795315	40795315	Nonsense_Mutation	G	A	p.R142*
UCEC	TCGA-D1-A103-01	LCA5L	ENST00000418018.1,ENST00000288350.3,ENST00000358268.2,ENST00000485895.2,ENST00000380671.2	chr21	40795345:40795416:40800097:40800429:40801056:40801137,	40800098	40800429	40800107	40800107	Nonsense_Mutation	G	A	p.Q105*
UCEC	TCGA-B5-A0JY-01	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41434795:41434826:41446963:41447140:41450613:41450904,	41446964	41447140	41446967	41446967	Nonsense_Mutation	G	A	p.R1629*
UCEC	TCGA-AX-A05Z-01	MX2	ENST00000330714.3,ENST00000482953.1,ENST00000496774.1	chr21	42770911:42770946:42771122:42771264:42773896:42774055,	42771123	42771264	42771165	42771165	Nonsense_Mutation	G	T	p.G439*
UCEC	TCGA-A5-A0GH-01	COL18A1	ENST00000359759.4,ENST00000355480.5,ENST00000400337.2	chr21	46906774:46906906:46907360:46907423:46908331:46908358,	46907361	46907423	46907403	46907403	Nonsense_Mutation	C	T	p.R1041*
UCEC	TCGA-BS-A0UV-01	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819167	20819167	Nonsense_Mutation	G	A	p.R364*
UCEC	TCGA-AX-A0J0-01	MED15	ENST00000432052.1,ENST00000428629.1,ENST00000382974.2,ENST00000425759.2	chr22	20905722:20905774:20907431:20907461:20909222:20909282,20905722:20905774:20907431:20907461:20918736:20918753,	20907432	20907461	20907439	20907439	Nonsense_Mutation	G	T	p.E40*
UCEC	TCGA-BS-A0UJ-01	LZTR1	ENST00000479606.1,ENST00000414985.1,ENST00000215739.8,ENST00000480895.1,ENST00000389355.3	chr22	21343077:21343161:21343913:21343971:21344674:21344814,	21343914	21343971	21343948	21343948	Nonsense_Mutation	C	T	p.R210*
UCEC	TCGA-AX-A05Z-01	MAPK1	ENST00000215832.6	chr22	22118272:22118529:22123483:22123609:22127161:22127271,	22123484	22123609	22123543	22123543	Nonsense_Mutation	C	A	p.E345*
UCEC	TCGA-AP-A051-01	SMARCB1	ENST00000407082.3,ENST00000263121.7	chr22	24129197:24129449:24133942:24134081:24135745:24135875,	24133943	24134081	24134006	24134006	Nonsense_Mutation	C	T	p.R53*
UCEC	TCGA-AP-A051-01	SMARCB1	ENST00000407422.3,ENST00000344921.6	chr22	24129197:24129449:24133942:24134054:24135745:24135875,	24133943	24134054	24134006	24134006	Nonsense_Mutation	C	T	p.R53*
UCEC	TCGA-B5-A11E-01	GGT5	ENST00000398292.3,ENST00000418439.2	chr22	24620963:24621074:24621212:24621382:24621513:24621620,	24621213	24621382	24621268	24621268	Nonsense_Mutation	G	A	p.R86*
UCEC	TCGA-B5-A11E-01	GGT5	ENST00000327365.4,ENST00000425408.1,ENST00000263112.7	chr22	24620963:24621074:24621212:24621379:24621513:24621620,	24621213	24621379	24621268	24621268	Nonsense_Mutation	G	A	p.R86*
UCEC	TCGA-AP-A0LM-01	GGT5	ENST00000327365.4,ENST00000425408.1,ENST00000263112.7	chr22	24621212:24621379:24621513:24621620:24622043:24622080,	24621514	24621620	24621550	24621550	Nonsense_Mutation	G	A	p.R434*
UCEC	TCGA-B5-A0JY-01	MYO18B	ENST00000536101.1,ENST00000418374.2,ENST00000335473.7,ENST00000539302.1,ENST00000407587.2	chr22	26388328:26388459:26399230:26399275:26400683:26400821,	26399231	26399275	26399265	26399265	Nonsense_Mutation	C	T	p.R2108*
UCEC	TCGA-AX-A05Z-01	CHEK2	ENST00000433728.1,ENST00000382566.1	chr22	29095825:29095925:29105993:29106047:29107896:29107919,	29105994	29106047	29106017	29106017	Nonsense_Mutation	C	A	p.E318*
UCEC	TCGA-B5-A11J-01	CHEK2	ENST00000448511.1	chr22	29107896:29108005:29115382:29115473:29120964:29121112,29107896:29108005:29115382:29115473:29120873:29120911,	29115383	29115473	29115437	29115437	Nonsense_Mutation	G	T	p.S253*
UCEC	TCGA-BS-A0UV-01	HSCB	ENST00000450178.1	chr22	29139869:29139966:29140602:29140692:29141851:29141996,29139869:29139911:29140602:29140692:29141851:29141996,	29140603	29140692	29140631	29140631	Nonsense_Mutation	C	T	p.R103*
UCEC	TCGA-BS-A0UV-01	HSCB	ENST00000420442.1,ENST00000495977.1	chr22	29139869:29139966:29140602:29140697:29147228:29147276,29139869:29139966:29140602:29140697:29141851:29141996,	29140603	29140697	29140631	29140631	Nonsense_Mutation	C	T	p.R103*
UCEC	TCGA-AP-A051-01	ZNRF3	ENST00000402174.1,ENST00000406323.3,ENST00000544604.2,ENST00000332811.4	chr22	29439286:29439418:29440767:29440878:29442703:29442871,	29440768	29440878	29440867	29440867	Nonsense_Mutation	C	T	p.R145*
UCEC	TCGA-B5-A0JY-01	NF2	ENST00000361452.4	chr22	29999987:30000101:30032739:30032865:30035078:30035201,29999987:30000101:30032739:30032865:30038190:30038274,	30032740	30032865	30032797	30032797	Nonsense_Mutation	G	T	p.E58*
UCEC	TCGA-B5-A0JY-01	ASCC2	ENST00000542393.1,ENST00000307790.3,ENST00000397771.2,ENST00000487486.1	chr22	30189575:30189665:30196979:30197099:30197982:30198197,	30196980	30197099	30197098	30197098	Nonsense_Mutation	C	A	p.E524*
UCEC	TCGA-D1-A17Q-01	MTMR3	ENST00000401950.2,ENST00000333027.3,ENST00000406629.1,ENST00000351488.3,ENST00000323630.5	chr22	30398868:30398982:30403102:30403308:30403889:30403964,	30403103	30403308	30403266	30403266	Nonsense_Mutation	C	T	p.R279*
UCEC	TCGA-D1-A16Y-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888460:30888544:30890136:30890197:30890852:30890948,	30890137	30890197	30890140	30890140	Nonsense_Mutation	G	A	p.R193*
UCEC	TCGA-AP-A059-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888460:30888544:30890136:30890197:30890852:30890948,	30890137	30890197	30890140	30890140	Nonsense_Mutation	G	A	p.R193*
UCEC	TCGA-AX-A05Z-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888460:30888544:30890136:30890197:30890852:30890948,	30890137	30890197	30890140	30890140	Nonsense_Mutation	G	A	p.R193*
UCEC	TCGA-BS-A0UV-01	LIMK2	ENST00000406516.1,ENST00000340552.4,ENST00000331728.4,ENST00000444929.2,ENST00000333611.4	chr22	31661931:31662118:31662969:31663056:31663761:31663893,	31662970	31663056	31663018	31663018	Nonsense_Mutation	C	T	p.R343*
UCEC	TCGA-BS-A0UF-01	LIMK2	ENST00000406516.1,ENST00000340552.4,ENST00000331728.4,ENST00000444929.2,ENST00000333611.4	chr22	31661931:31662118:31662969:31663056:31663761:31663893,	31662970	31663056	31663018	31663018	Nonsense_Mutation	C	T	p.R343*
UCEC	TCGA-D1-A16X-01	LIMK2	ENST00000406516.1,ENST00000340552.4,ENST00000331728.4,ENST00000444929.2,ENST00000333611.4	chr22	31661931:31662118:31662969:31663056:31663761:31663893,	31662970	31663056	31663018	31663018	Nonsense_Mutation	C	T	p.R343*
UCEC	TCGA-BS-A0UV-01	PIK3IP1	ENST00000441972.1	chr22	31678925:31679274:31685484:31685685:31686950:31687070,	31685485	31685685	31685650	31685650	Nonsense_Mutation	C	A	p.E115*
UCEC	TCGA-D1-A17Q-01	SFI1	ENST00000452250.1	chr22	31998197:31998279:31998592:31998771:32000294:32000390,31998197:31998279:31998592:31998771:32003922:32004019,	31998593	31998771	31998724	31998724	Nonsense_Mutation	G	T	p.E293*
UCEC	TCGA-D1-A103-01	KCTD17	ENST00000402077.3,ENST00000478231.1	chr22	37455352:37455478:37456862:37456962:37457143:37457215,37455352:37455478:37456862:37456962:37457578:37457604,	37456863	37456962	37456935	37456935	Nonsense_Mutation	C	T	p.Q236*
UCEC	TCGA-AP-A056-01	POLR2F	ENST00000333418.4	chr22	38382205:38382319:38421875:38422154:38422280:38422692,	38421876	38422154	38421981	38421981	Nonsense_Mutation	G	T	p.E76*
UCEC	TCGA-B5-A0JY-01	JOSD1	ENST00000545590.1	chr22	39083928:39084006:39084939:39085134:39085300:39085429,39083928:39084006:39084939:39085134:39095807:39095975,	39084940	39085134	39085019	39085019	Nonsense_Mutation	G	A	p.R144*
UCEC	TCGA-BS-A0UV-01	GTPBP1	ENST00000216044.5	chr22	39112656:39113005:39117746:39117870:39120301:39120416,	39117747	39117870	39117783	39117783	Nonsense_Mutation	G	T	p.E291*
UCEC	TCGA-B5-A0JY-01	ENTHD1	ENST00000325157.6	chr22	40139048:40140288:40161227:40161614:40216997:40217118,	40161228	40161614	40161495	40161495	Nonsense_Mutation	C	A	p.E318*
UCEC	TCGA-AX-A05Z-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661412	40661412	Nonsense_Mutation	G	T	p.E136*
UCEC	TCGA-AP-A0LM-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662995	40662995	Nonsense_Mutation	C	T	p.R921*
UCEC	TCGA-BS-A0UV-01	ST13	ENST00000480048.1	chr22	41225629:41225678:41226843:41226960:41228572:41228675,41225629:41225678:41226843:41226960:41231563:41231674,	41226844	41226960	41226870	41226870	Nonsense_Mutation	G	A	p.R258*
UCEC	TCGA-B5-A11Y-01	XPNPEP3	ENST00000414396.1,ENST00000357137.4,ENST00000544094.1,ENST00000541156.1	chr22	41266051:41266143:41277773:41278181:41282316:41282519,41265002:41265119:41277773:41278181:41282316:41282519,	41277774	41278181	41278091	41278091	Nonsense_Mutation	C	T	p.R167*
UCEC	TCGA-AP-A0LM-01	XPNPEP3	ENST00000357137.4,ENST00000544094.1,ENST00000428799.1	chr22	41277773:41278181:41282316:41282519:41303590:41303653,	41282317	41282519	41282487	41282487	Nonsense_Mutation	C	T	p.R254*
UCEC	TCGA-AP-A0LM-01	L3MBTL2	ENST00000479978.1,ENST00000481902.1,ENST00000452106.1,ENST00000216237.5,ENST00000466589.1	chr22	41620728:41620805:41620970:41621075:41621797:41621945,	41620971	41621075	41620974	41620974	Nonsense_Mutation	C	T	p.R419*
UCEC	TCGA-AX-A0J1-01	ZC3H7B	ENST00000352645.4,ENST00000351589.4	chr22	41742065:41742212:41744070:41744171:41745123:41745305,	41744071	41744171	41744076	41744076	Nonsense_Mutation	C	A	p.C557*
UCEC	TCGA-AP-A059-01	MEI1	ENST00000401548.3,ENST00000476893.1,ENST00000300398.4,ENST00000403492.1,ENST00000400107.1	chr22	42180342:42180424:42180611:42180787:42189832:42189914,	42180612	42180787	42180644	42180644	Nonsense_Mutation	C	T	p.R1068*
UCEC	TCGA-B5-A11F-01	SERHL2	ENST00000340239.4,ENST00000527167.1,ENST00000534080.1,ENST00000477564.1,ENST00000416156.2,ENST00000327678.5	chr22	42950026:42950048:42950943:42951093:42951237:42951351,	42950944	42951093	42951002	42951002	Nonsense_Mutation	G	A	p.W27*
UCEC	TCGA-D1-A17Q-01	EFCAB6	ENST00000468552.1	chr22	43995948:43996143:44004361:44004480:44022326:44022559,	44004362	44004480	44004441	44004441	Nonsense_Mutation	G	A	p.R868*
UCEC	TCGA-D1-A17Q-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45792225:45792366:45794974:45795233:45798212:45798451,	45794975	45795233	45795181	45795181	Nonsense_Mutation	C	A	p.E303*
UCEC	TCGA-AP-A056-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45792225:45792366:45794974:45795233:45798212:45798451,	45794975	45795233	45795181	45795181	Nonsense_Mutation	C	A	p.E303*
UCEC	TCGA-BS-A0UV-01	GTSE1	ENST00000454366.1	chr22	46693276:46693376:46704046:46704104:46704215:46704840,	46704047	46704104	46704101	46704101	Nonsense_Mutation	C	A	p.S45*
UCEC	TCGA-AX-A0J0-01	TRMU	ENST00000381021.3,ENST00000441818.1,ENST00000457572.1,ENST00000453630.1,ENST00000290846.4,ENST00000381019.3,ENST00000456595.1	chr22	46748017:46748071:46748160:46748227:46749663:46749764,	46748161	46748227	46748197	46748197	Nonsense_Mutation	G	T	p.E248*
UCEC	TCGA-BS-A0UV-01	CERK	ENST00000216264.8,ENST00000443629.1,ENST00000541677.1	chr22	47108064:47108190:47115982:47116105:47116798:47116912,	47115983	47116105	47116085	47116085	Nonsense_Mutation	G	A	p.R93*
UCEC	TCGA-AP-A0LM-01	BRD1	ENST00000438393.1	chr22	50171325:50171461:50181037:50181170:50187681:50187942,	50181038	50181170	50181065	50181065	Nonsense_Mutation	C	A	p.E813*
UCEC	TCGA-AP-A0LM-01	BRD1	ENST00000404034.1,ENST00000542442.1,ENST00000216267.8	chr22	50171325:50171461:50181037:50181142:50187681:50187942,	50181038	50181142	50181065	50181065	Nonsense_Mutation	C	A	p.E813*
UCEC	TCGA-AP-A0LM-01	BRD1	ENST00000404760.1,ENST00000342989.5	chr22	50171325:50171461:50181037:50181535:50187681:50187942,	50181038	50181535	50181065	50181065	Nonsense_Mutation	C	A	p.E813*
UCEC	TCGA-B5-A0JY-01	MOV10L1	ENST00000262794.5,ENST00000545383.1,ENST00000395852.1	chr22	50598106:50598214:50599116:50599254:50599796:50600047,50598106:50598214:50599116:50599254:50599392:50599484,	50599117	50599254	50599252	50599252	Nonsense_Mutation	C	T	p.R1154*
UCEC	TCGA-AP-A059-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728216	50728216	Nonsense_Mutation	G	T	p.C266*
UCEC	TCGA-AP-A059-01	TYMP	ENST00000487577.1,ENST00000252029.3,ENST00000395680.1,ENST00000395681.1,ENST00000395678.3,ENST00000476284.1	chr22	50966016:50966146:50966940:50967039:50967564:50967723,	50966941	50967039	50966943	50966943	Nonsense_Mutation	G	A	p.Q172*
UCEC	TCGA-A5-A0GI-01	ARSE	ENST00000540563.1,ENST00000381134.3,ENST00000545496.1	chrX	2861105:2861240:2864038:2864175:2867344:2867768,	2864039	2864175	2864057	2864057	Nonsense_Mutation	C	A	p.E325*
UCEC	TCGA-B5-A0JY-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7893992	7893992	Nonsense_Mutation	C	A	p.E57*
UCEC	TCGA-AX-A0J0-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10046838:10046915:10047764:10047844:10058810:10058940,	10047765	10047844	10047819	10047819	Nonsense_Mutation	G	T	p.E118*
UCEC	TCGA-AP-A0LM-01	OFD1	ENST00000490265.1	chrX	13769367:13769487:13770822:13771560:13773269:13773361,	13770823	13771560	13771530	13771530	Nonsense_Mutation	C	T	p.R367*
UCEC	TCGA-AP-A0LM-01	OFD1	ENST00000380567.1,ENST00000340096.6	chrX	13769367:13769487:13771486:13771560:13773269:13773361,	13771487	13771560	13771530	13771530	Nonsense_Mutation	C	T	p.R367*
UCEC	TCGA-D1-A17Q-01	OFD1	ENST00000490265.1	chrX	13769367:13769487:13770822:13771560:13773269:13773361,	13770823	13771560	13771530	13771530	Nonsense_Mutation	C	T	p.R367*
UCEC	TCGA-D1-A17Q-01	OFD1	ENST00000380567.1,ENST00000340096.6	chrX	13769367:13769487:13771486:13771560:13773269:13773361,	13771487	13771560	13771530	13771530	Nonsense_Mutation	C	T	p.R367*
UCEC	TCGA-BS-A0UV-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000380550.3,ENST00000340096.6	chrX	13780462:13780563:13785245:13785403:13786172:13786343,13781869:13781974:13785245:13785403:13786172:13786343,	13785246	13785403	13785377	13785377	Nonsense_Mutation	G	T	p.E911*
UCEC	TCGA-AX-A0J0-01	GPM6B	ENST00000493085.1,ENST00000454189.2,ENST00000356942.5,ENST00000398361.3,ENST00000316715.4,ENST00000468080.1,ENST00000493677.1,ENST00000355135.2	chrX	13798026:13798108:13801483:13801640:13803740:13803927,	13801484	13801640	13801612	13801612	Nonsense_Mutation	C	A	p.G133*
UCEC	TCGA-D1-A16X-01	PIGA	ENST00000474662.1	chrX	15344035:15344168:15349711:15350114:15353622:15353645,	15349712	15350114	15349824	15349824	Nonsense_Mutation	G	A	p.R77*
UCEC	TCGA-D1-A16X-01	PIGA	ENST00000333590.4	chrX	15344035:15344168:15349337:15350114:15353622:15353645,	15349338	15350114	15349824	15349824	Nonsense_Mutation	G	A	p.R77*
UCEC	TCGA-BS-A0UJ-01	CTPS2	ENST00000380241.3,ENST00000443824.1,ENST00000359276.4	chrX	16638399:16638455:16657269:16657366:16685636:16685680,	16657270	16657366	16657302	16657302	Nonsense_Mutation	C	A	p.E76*
UCEC	TCGA-D1-A103-01	CTPS2	ENST00000455276.1,ENST00000380241.3,ENST00000443824.1,ENST00000359276.4	chrX	16685636:16685680:16685784:16685847:16688702:16688756,	16685785	16685847	16685815	16685815	Nonsense_Mutation	C	A	p.E408*
UCEC	TCGA-B5-A0JY-01	PPEF1	ENST00000543630.1,ENST00000349874.5,ENST00000496616.1,ENST00000361511.4,ENST00000359763.6,ENST00000471570.1	chrX	18725777:18725945:18748298:18748426:18751865:18751926,	18748299	18748426	18748330	18748330	Nonsense_Mutation	G	A	p.W26*
UCEC	TCGA-AX-A0J1-01	PHKA2	ENST00000379942.4	chrX	18969221:18969390:18970611:18970659:18972371:18972530,	18970612	18970659	18970641	18970641	Nonsense_Mutation	G	A	p.R86*
UCEC	TCGA-D1-A103-01	MAP3K15	ENST00000359173.3,ENST00000518578.1,ENST00000338883.4,ENST00000469203.2	chrX	19413198:19413326:19416343:19416477:19418693:19418781,	19416344	19416477	19416387	19416387	Nonsense_Mutation	G	A	p.Q150*
UCEC	TCGA-D1-A16Y-01	MAP7D2	ENST00000452324.3,ENST00000485173.1,ENST00000543767.1,ENST00000379651.3,ENST00000379643.5,ENST00000443379.3	chrX	20031686:20031743:20033340:20033445:20034211:20034289,	20033341	20033445	20033442	20033442	Nonsense_Mutation	C	A	p.E509*
UCEC	TCGA-AP-A0LM-01	RPS6KA3	ENST00000379548.4,ENST00000438357.1,ENST00000540702.1,ENST00000457145.1,ENST00000544447.1,ENST00000379565.3,ENST00000492128.1	chrX	20212309:20212386:20213182:20213263:20222139:20222221,	20213183	20213263	20213261	20213261	Nonsense_Mutation	G	A	p.R110*
UCEC	TCGA-AP-A0LM-01	CNKSR2	ENST00000379510.3,ENST00000279451.4,ENST00000425654.2	chrX	21519637:21519706:21534602:21534749:21544984:21545118,	21534603	21534749	21534678	21534678	Nonsense_Mutation	C	T	p.R296*
UCEC	TCGA-D1-A103-01	SMS	ENST00000478094.1,ENST00000415881.2	chrX	21985313:21985434:21990624:21990689:21995178:21995350,	21990625	21990689	21990655	21990655	Nonsense_Mutation	G	T	p.E99*
UCEC	TCGA-D1-A103-01	PHEX	ENST00000379374.4,ENST00000537599.1,ENST00000535894.1,ENST00000418858.3	chrX	22231020:22231075:22237152:22237220:22239729:22239860,	22237153	22237220	22237175	22237175	Nonsense_Mutation	G	T	p.G575*
UCEC	TCGA-BS-A0UF-01	PDK3	ENST00000441463.2	chrX	24483572:24483678:24512858:24513000:24516945:24517017,	24512859	24513000	24512886	24512886	Nonsense_Mutation	C	A	p.S45*
UCEC	TCGA-AX-A063-01	PDK3	ENST00000379162.4,ENST00000441463.2	chrX	24545690:24545792:24546192:24546303:24549773:24549887,	24546193	24546303	24546223	24546223	Nonsense_Mutation	C	T	p.R295*
UCEC	TCGA-AX-A05Z-01	GK	ENST00000471362.1	chrX	30709239:30709316:30712516:30712654:30714158:30714179,30695491:30695569:30712516:30712654:30714158:30714179,	30712517	30712654	30712610	30712610	Nonsense_Mutation	G	T	p.E170*
UCEC	TCGA-BS-A0UF-01	TAB3	ENST00000378932.2	chrX	30861104:30861166:30864667:30864761:30870894:30871004,30852167:30852269:30864667:30864761:30870894:30871004,	30864668	30864761	30864692	30864692	Nonsense_Mutation	C	A	p.E594*
UCEC	TCGA-AX-A05Z-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32328198:32328393:32360216:32360399:32361250:32361403,	32360217	32360399	32360240	32360240	Nonsense_Mutation	G	A	p.R1967*
UCEC	TCGA-D1-A16X-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32328198:32328393:32360216:32360399:32361250:32361403,	32360217	32360399	32360240	32360240	Nonsense_Mutation	G	A	p.R1967*
UCEC	TCGA-D1-A17Q-01	RPGR	ENST00000318842.7,ENST00000309513.3,ENST00000338898.3	chrX	38135839:38136025:38146346:38146498:38147113:38147294,	38146347	38146498	38146424	38146424	Nonsense_Mutation	C	A	p.E610*
UCEC	TCGA-D1-A17Q-01	RPGR	ENST00000339363.3	chrX	38135839:38136025:38146346:38147294:38150211:38150277,	38146347	38147294	38146424	38146424	Nonsense_Mutation	C	A	p.E610*
UCEC	TCGA-B5-A0JY-01	RPGR	ENST00000339363.3	chrX	38135839:38136025:38146346:38147294:38150211:38150277,	38146347	38147294	38147249	38147249	Nonsense_Mutation	C	A	p.E540*
UCEC	TCGA-B5-A0JY-01	RPGR	ENST00000342811.3,ENST00000318842.7,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38146346:38146498:38147113:38147294:38150211:38150277,	38147114	38147294	38147249	38147249	Nonsense_Mutation	C	A	p.E540*
UCEC	TCGA-BS-A0UF-01	RPGR	ENST00000474584.1,ENST00000342811.3,ENST00000318842.7,ENST00000339363.3,ENST00000494841.1,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38156560:38156705:38158208:38158394:38160499:38160624,	38158209	38158394	38158319	38158319	Nonsense_Mutation	C	A	p.E379*
UCEC	TCGA-AP-A051-01	CASK	ENST00000472704.1,ENST00000421587.2,ENST00000442742.2,ENST00000378179.3	chrX	41412971:41413168:41414852:41414888:41416284:41416353,41412971:41413168:41414852:41414888:41419031:41419100,	41414853	41414888	41414858	41414858	Nonsense_Mutation	G	A	p.R613*
UCEC	TCGA-AP-A056-01	MAOA	ENST00000542639.1,ENST00000497485.1	chrX	43517109:43517217:43542760:43542855:43552537:43552675,	43542761	43542855	43542835	43542835	Nonsense_Mutation	G	T	p.G50*
UCEC	TCGA-AP-A056-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44870205:44870264:44879854:44879975:44894175:44894230,	44879855	44879975	44879913	44879913	Nonsense_Mutation	G	T	p.E168*
UCEC	TCGA-BG-A0MG-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034471	47034471	Nonsense_Mutation	C	T	p.R186*
UCEC	TCGA-BS-A0UF-01	UBA1	ENST00000377351.4,ENST00000335972.6,ENST00000442035.1,ENST00000412206.1	chrX	47058878:47059013:47060292:47060399:47060674:47060765,	47060293	47060399	47060332	47060332	Nonsense_Mutation	C	T	p.R174*
UCEC	TCGA-AP-A059-01	UBA1	ENST00000377351.4,ENST00000335972.6,ENST00000442035.1,ENST00000412206.1	chrX	47058878:47059013:47060292:47060399:47060674:47060765,	47060293	47060399	47060332	47060332	Nonsense_Mutation	C	T	p.R174*
UCEC	TCGA-B5-A11E-01	TIMM17B	ENST00000376582.3	chrX	48752320:48752384:48754041:48754141:48755006:48755045,	48754042	48754141	48754113	48754113	Nonsense_Mutation	C	A	p.G19*
UCEC	TCGA-BS-A0UF-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50051794	50051794	Nonsense_Mutation	G	T	p.E209*
UCEC	TCGA-B5-A0JY-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50051905	50051905	Nonsense_Mutation	G	T	p.E246*
UCEC	TCGA-BS-A0TC-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052167	50052167	Nonsense_Mutation	T	A	p.L333*
UCEC	TCGA-BS-A0UV-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052215	50052215	Nonsense_Mutation	C	A	p.S349*
UCEC	TCGA-AP-A0LM-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052433	50052433	Nonsense_Mutation	G	T	p.E422*
UCEC	TCGA-BS-A0UF-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052433	50052433	Nonsense_Mutation	G	T	p.E422*
UCEC	TCGA-AX-A05Z-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50053138	50053138	Nonsense_Mutation	G	T	p.E657*
UCEC	TCGA-BS-A0UV-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50053291	50053291	Nonsense_Mutation	A	T	p.K708*
UCEC	TCGA-B5-A0JY-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50053330	50053330	Nonsense_Mutation	G	T	p.E721*
UCEC	TCGA-A5-A0GP-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50054374	50054374	Nonsense_Mutation	G	T	p.E1069*
UCEC	TCGA-AP-A051-01	RIBC1	ENST00000375327.3	chrX	53454950:53455032:53455230:53455575:53456801:53456920,	53455231	53455575	53455491	53455491	Nonsense_Mutation	A	T	p.R154*
UCEC	TCGA-AX-A0J0-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000426907.1,ENST00000262854.6,ENST00000474288.1	chrX	53570846:53570929:53571520:53571723:53571989:53572122,	53571521	53571723	53571546	53571546	Nonsense_Mutation	C	A	p.E2776*
UCEC	TCGA-AP-A0LM-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53579598:53579854:53581593:53581881:53584342:53584388,	53581594	53581881	53581811	53581811	Nonsense_Mutation	C	A	p.G1793*
UCEC	TCGA-BS-A0UF-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53590706:53590782:53591534:53591683:53592027:53592200,	53591535	53591683	53591584	53591584	Nonsense_Mutation	G	T	p.S2327*
UCEC	TCGA-D1-A17Q-01	HUWE1	ENST00000218328.8,ENST00000342160.3,ENST00000262854.6	chrX	53672262:53672415:53674310:53674517:53675154:53675253,	53674311	53674517	53674313	53674313	Nonsense_Mutation	C	A	p.E117*
UCEC	TCGA-B5-A0JY-01	MAGED2	ENST00000375060.1,ENST00000218439.4,ENST00000396224.1,ENST00000375053.2,ENST00000375058.1,ENST00000375062.4,ENST00000347546.4,ENST00000375068.1	chrX	54837682:54837746:54838006:54838086:54838589:54838684,	54838007	54838086	54838030	54838030	Nonsense_Mutation	G	T	p.E312*
UCEC	TCGA-AP-A0LM-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393595	65393595	Nonsense_Mutation	C	T	p.R196*
UCEC	TCGA-D1-A160-01	AR	ENST00000396043.2,ENST00000396044.3,ENST00000374690.3	chrX	66863097:66863249:66905851:66905968:66931243:66931531,	66905852	66905968	66905968	66905968	Nonsense_Mutation	G	T	p.E629*
UCEC	TCGA-BS-A0UF-01	AR	ENST00000396043.2,ENST00000374690.3	chrX	66941674:66941805:66942668:66942826:66943527:66943778,	66942669	66942826	66942713	66942713	Nonsense_Mutation	C	T	p.R832*
UCEC	TCGA-B5-A0JY-01	IGBP1	ENST00000356413.4	chrX	69353572:69353985:69354372:69354666:69366482:69366678,	69354373	69354666	69354500	69354500	Nonsense_Mutation	C	T	p.R106*
UCEC	TCGA-AX-A0J0-01	IGBP1	ENST00000356413.4	chrX	69353572:69353985:69354372:69354666:69366482:69366678,	69354373	69354666	69354503	69354503	Nonsense_Mutation	G	T	p.E107*
UCEC	TCGA-B5-A0JY-01	IL2RG	ENST00000464642.1,ENST00000374202.2	chrX	70329077:70329240:70330005:70330145:70330353:70330538,	70330006	70330145	70330089	70330089	Nonsense_Mutation	C	A	p.E171*
UCEC	TCGA-B5-A11E-01	NONO	ENST00000276079.8,ENST00000535149.1,ENST00000373856.3,ENST00000373841.1,ENST00000471419.2	chrX	70511766:70511822:70514076:70514378:70516414:70516510,	70514077	70514378	70514185	70514185	Nonsense_Mutation	C	T	p.R153*
UCEC	TCGA-BS-A0UF-01	TAF1	ENST00000373790.4,ENST00000478305.1,ENST00000449580.1,ENST00000423759.1,ENST00000276072.3	chrX	70608086:70608228:70608587:70608718:70609434:70609480,	70608588	70608718	70608641	70608641	Nonsense_Mutation	G	T	p.E895*
UCEC	TCGA-AP-A059-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76814139:76814317:76829714:76829823:76845303:76845410,	76829715	76829823	76829806	76829806	Nonsense_Mutation	G	A	p.R2079*
UCEC	TCGA-AX-A0J0-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937678	76937678	Nonsense_Mutation	C	A	p.E1024*
UCEC	TCGA-D1-A103-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938995	76938995	Nonsense_Mutation	C	A	p.E585*
UCEC	TCGA-AP-A059-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939496	76939496	Nonsense_Mutation	G	A	p.R418*
UCEC	TCGA-D1-A17Q-01	ATRX	ENST00000395603.3,ENST00000480283.1	chrX	76954061:76954117:76972607:76972720:77041467:77041702,	76972608	76972720	76972659	76972659	Nonsense_Mutation	C	A	p.E28*
UCEC	TCGA-AP-A051-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77243737:77244227:77244728:77245454:77253974:77254181,	77244729	77245454	77245424	77245424	Nonsense_Mutation	G	T	p.E436*
UCEC	TCGA-BS-A0TC-01	ATP7A	ENST00000341514.6	chrX	77266945:77267171:77268375:77268609:77270158:77270250,	77268376	77268609	77268586	77268586	Nonsense_Mutation	C	T	p.R795*
UCEC	TCGA-BS-A0UV-01	CHM	ENST00000537751.1,ENST00000357749.2	chrX	85156088:85156193:85166265:85166343:85211157:85211383,	85166266	85166343	85166276	85166276	Nonsense_Mutation	C	A	p.E412*
UCEC	TCGA-AP-A056-01	KLHL4	ENST00000373114.4,ENST00000373119.4	chrX	86872934:86873131:86877210:86877423:86880609:86880796,	86877211	86877423	86877313	86877313	Nonsense_Mutation	G	T	p.E343*
UCEC	TCGA-BS-A0UV-01	DIAPH2	ENST00000373054.4	chrX	95939710:95940189:95993584:95993761:96013152:96013257,	95993585	95993761	95993627	95993627	Nonsense_Mutation	G	T	p.E70*
UCEC	TCGA-B5-A0JY-01	ARL13A	ENST00000450457.2	chrX	100243181:100243272:100243366:100243547:100245550:100245668,100243181:100243272:100243366:100243547:100245324:100245818,	100243367	100243547	100243424	100243424	Nonsense_Mutation	G	T	p.E268*
UCEC	TCGA-BS-A0UF-01	RBM41	ENST00000372487.1,ENST00000372479.3	chrX	106312539:106312632:106331665:106332069:106358581:106358684,	106331666	106332069	106331767	106331767	Nonsense_Mutation	C	A	p.E276*
UCEC	TCGA-AX-A05Z-01	NUP62CL	ENST00000421752.1,ENST00000372466.4	chrX	106396683:106396733:106397325:106397476:106410878:106411014,	106397326	106397476	106397395	106397395	Nonsense_Mutation	C	A	p.E24*
UCEC	TCGA-BS-A0UV-01	MID2	ENST00000262843.6	chrX	107159231:107159359:107160735:107160969:107167572:107167734,	107160736	107160969	107160908	107160908	Nonsense_Mutation	G	A	p.W458*
UCEC	TCGA-AX-A05Z-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000394872.2,ENST00000334504.7	chrX	107417669:107417851:107418319:107418445:107418883:107418972,	107418320	107418445	107418374	107418374	Nonsense_Mutation	C	A	p.G969*
UCEC	TCGA-BS-A0UF-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000394872.2,ENST00000334504.7	chrX	107431077:107431257:107431746:107431907:107433621:107433726,	107431747	107431907	107431785	107431785	Nonsense_Mutation	G	A	p.R518*
UCEC	TCGA-BS-A0UF-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000334504.7	chrX	107436857:107436927:107437763:107437817:107438311:107438356,	107437764	107437817	107437766	107437766	Nonsense_Mutation	C	A	p.E335*
UCEC	TCGA-AP-A0LM-01	LHFPL1	ENST00000536453.1	chrX	111874501:111874829:111914236:111914632:111923056:111923282,	111914237	111914632	111914376	111914376	Nonsense_Mutation	C	T	p.W81*
UCEC	TCGA-B5-A0JY-01	LHFPL1	ENST00000536453.1	chrX	111874501:111874829:111914236:111914632:111923056:111923282,	111914237	111914632	111914423	111914423	Nonsense_Mutation	C	A	p.E66*
UCEC	TCGA-B5-A11E-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112066060	112066060	Nonsense_Mutation	G	A	p.R99*
UCEC	TCGA-B5-A11E-01	WDR44	ENST00000254029.3,ENST00000371825.3	chrX	117480161:117480543:117521302:117521377:117526594:117527178,117512381:117512415:117521302:117521377:117526594:117527178,	117521303	117521377	117521351	117521351	Nonsense_Mutation	G	T	p.E54*
UCEC	TCGA-BS-A0TC-01	DOCK11	ENST00000276202.7,ENST00000276204.6	chrX	117814444:117814655:117815020:117815211:117815656:117815757,	117815021	117815211	117815024	117815024	Nonsense_Mutation	C	A	p.S1892*
UCEC	TCGA-B5-A0JY-01	DOCK11	ENST00000276202.7,ENST00000276204.6	chrX	117814444:117814655:117815020:117815211:117815656:117815757,	117815021	117815211	117815110	117815110	Nonsense_Mutation	G	T	p.E1921*
UCEC	TCGA-D1-A17Q-01	SLC25A43	ENST00000488158.1	chrX	118533371:118533641:118540422:118540664:118585971:118586106,118533371:118533641:118540422:118540664:118544152:118544325,	118540423	118540664	118540640	118540640	Nonsense_Mutation	C	T	p.R165*
UCEC	TCGA-D1-A167-01	NKAP	ENST00000371410.3	chrX	119070574:119070645:119072692:119072773:119077182:119077735,	119072693	119072773	119072723	119072723	Nonsense_Mutation	C	T	p.W146*
UCEC	TCGA-B5-A11E-01	LAMP2	ENST00000200639.4	chrX	119565102:119565317:119575584:119575749:119576453:119576517,	119575585	119575749	119575685	119575685	Nonsense_Mutation	G	T	p.C331*
UCEC	TCGA-BS-A0UV-01	CUL4B	ENST00000336592.6,ENST00000404115.3,ENST00000371322.5	chrX	119660495:119660711:119663956:119664109:119666276:119666449,	119663957	119664109	119664037	119664037	Nonsense_Mutation	G	A	p.R856*
UCEC	TCGA-B5-A0JY-01	CUL4B	ENST00000336592.6,ENST00000404115.3,ENST00000371323.2,ENST00000371322.5	chrX	119677968:119678058:119678335:119678498:119679298:119679372,	119678336	119678498	119678368	119678368	Nonsense_Mutation	G	A	p.R369*
UCEC	TCGA-A5-A0GP-01	XIAP	ENST00000371199.3	chrX	122994303:122994395:123019480:123020389:123022468:123022533,122993727:122993755:123019480:123020389:123022468:123022533,122994044:122994143:123019480:123020389:123022468:123022533,	123019481	123020389	123019576	123019576	Nonsense_Mutation	G	T	p.E22*
UCEC	TCGA-A5-A0GP-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123171376:123171473:123176418:123176495:123179013:123179058,	123176419	123176495	123176469	123176469	Nonsense_Mutation	C	T	p.R146*
UCEC	TCGA-BS-A0TC-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123211806:123211908:123215229:123215378:123217270:123217399,	123215230	123215378	123215302	123215302	Nonsense_Mutation	G	T	p.E950*
UCEC	TCGA-A5-A0GP-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123211806:123211908:123215229:123215378:123217270:123217399,	123215230	123215378	123215311	123215311	Nonsense_Mutation	C	T	p.R953*
UCEC	TCGA-BS-A0UF-01	SMARCA1	ENST00000371122.4	chrX	128625917:128626070:128627016:128627052:128630726:128630848,	128627017	128627052	128627040	128627040	Nonsense_Mutation	C	A	p.E547*
UCEC	TCGA-AX-A0J0-01	OCRL	ENST00000357121.5,ENST00000371113.4	chrX	128722862:128722990:128723821:128723933:128724122:128724610,	128723822	128723933	128723882	128723882	Nonsense_Mutation	C	T	p.R844*
UCEC	TCGA-AP-A0LM-01	AIFM1	ENST00000529877.1	chrX	129283443:129283543:129290434:129290577:129299524:129299638,129289130:129289261:129290434:129290577:129299524:129299638,	129290435	129290577	129290563	129290563	Nonsense_Mutation	G	A	p.R41*
UCEC	TCGA-D1-A17Q-01	ZNF280C	ENST00000370978.4	chrX	129354322:129354454:129361655:129361756:129362950:129363108,129360732:129360879:129361655:129361756:129362950:129363108,	129361656	129361756	129361732	129361732	Nonsense_Mutation	G	T	p.S391*
UCEC	TCGA-D1-A167-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408074	130408074	Nonsense_Mutation	C	T	p.W1286*
UCEC	TCGA-B5-A11R-01	PHF6	ENST00000416404.2	chrX	133507402:133507497:133511601:133511785:133527530:133527664,	133511602	133511785	133511652	133511652	Nonsense_Mutation	C	G	p.S2*
UCEC	TCGA-AP-A059-01	ZNF75D	ENST00000370766.3	chrX	134425397:134425489:134426206:134426399:134427655:134428184,	134426207	134426399	134426231	134426231	Nonsense_Mutation	C	A	p.E194*
UCEC	TCGA-AP-A059-01	ZNF75D	ENST00000370766.3	chrX	134426206:134426399:134427655:134428184:134429693:134429848,	134427656	134428184	134427985	134427985	Nonsense_Mutation	C	A	p.E28*
UCEC	TCGA-B5-A0JY-01	MMGT1	ENST00000433339.2	chrX	135049548:135049652:135053216:135053269:135055755:135055981,	135053217	135053269	135053240	135053240	Nonsense_Mutation	C	A	p.E37*
UCEC	TCGA-B5-A0JY-01	VGLL1	ENST00000370634.3	chrX	135630747:135631167:135632926:135632980:135638609:135638655,	135632927	135632980	135632931	135632931	Nonsense_Mutation	G	T	p.E131*
UCEC	TCGA-B5-A11E-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2,ENST00000471746.1	chrX	138850418:138850593:138856848:138857112:138864705:138864792,	138856849	138857112	138856925	138856925	Nonsense_Mutation	G	A	p.R717*
UCEC	TCGA-B5-A11N-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2,ENST00000471746.1	chrX	138850418:138850593:138856848:138857112:138864705:138864792,	138856849	138857112	138856925	138856925	Nonsense_Mutation	G	A	p.R717*
UCEC	TCGA-BS-A0UF-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138856848:138857112:138864705:138864887:138865322:138865426,	138864706	138864887	138864854	138864854	Nonsense_Mutation	C	A	p.E605*
UCEC	TCGA-D1-A16X-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138867384:138867458:138869331:138869403:138870350:138870502,	138869332	138869403	138869378	138869378	Nonsense_Mutation	G	A	p.R519*
UCEC	TCGA-AP-A0LM-01	AFF2	ENST00000370460.2	chrX	147891399:147891444:147919170:147919257:147924489:147924526,	147919171	147919257	147919255	147919255	Nonsense_Mutation	C	T	p.Q391*
UCEC	TCGA-BS-A0UF-01	MTM1	ENST00000490530.1,ENST00000424519.1,ENST00000542741.1,ENST00000413012.2,ENST00000543350.1,ENST00000370393.1,ENST00000306167.7	chrX	149737092:149737112:149761066:149761139:149764961:149765034,	149761067	149761139	149761103	149761103	Nonsense_Mutation	T	G	p.Y9*
UCEC	TCGA-AX-A05Z-01	MTM1	ENST00000413012.2	chrX	149764961:149765034:149767055:149767150:149783061:149783172,149764961:149765034:149767055:149767150:149787510:149787612,	149767056	149767150	149767061	149767061	Nonsense_Mutation	G	T	p.E48*
UCEC	TCGA-D1-A16Y-01	MTM1	ENST00000370396.2	chrX	149767055:149767150:149783061:149783172:149787510:149787612,	149783062	149783172	149783119	149783119	Nonsense_Mutation	G	T	p.G97*
UCEC	TCGA-D1-A17Q-01	MTMR1	ENST00000370390.3,ENST00000451863.2,ENST00000445323.2,ENST00000544228.1,ENST00000485376.1,ENST00000541925.1	chrX	149901013:149901202:149905066:149905252:149905713:149905920,	149905067	149905252	149905241	149905241	Nonsense_Mutation	G	T	p.E411*
UCEC	TCGA-AP-A059-01	MTMR1	ENST00000485376.1,ENST00000538506.1,ENST00000488357.1	chrX	149919263:149919315:149919501:149919712:149924160:149924337,	149919502	149919712	149919523	149919523	Nonsense_Mutation	C	T	p.R385*
UCEC	TCGA-AP-A056-01	MTMR1	ENST00000370390.3,ENST00000485376.1	chrX	149924160:149924337:149931037:149931210:149932984:149933397,	149931038	149931210	149931091	149931091	Nonsense_Mutation	G	T	p.E163*
UCEC	TCGA-BS-A0UF-01	HCFC1	ENST00000354233.3,ENST00000444191.1,ENST00000310441.7,ENST00000369984.4	chrX	153215693:153215994:153216263:153216449:153216800:153216938,	153216264	153216449	153216301	153216301	Nonsense_Mutation	C	T	p.W464*
UCEC	TCGA-B5-A0JY-01	IRAK1	ENST00000393687.2,ENST00000429936.2	chrX	153278035:153278129:153279492:153279729:153281482:153281524,153278786:153278884:153279492:153279729:153281887:153282095,153278786:153278884:153279492:153279729:153281482:153281524,153278493:153278794:153279492:153279729:153281482:153281524,	153279493	153279729	153279717	153279717	Nonsense_Mutation	C	A	p.E439*
UCEC	TCGA-AP-A0LM-01	FLNA	ENST00000498491.1	chrX	153578398:153578575:153579276:153579409:153579948:153580064,153578398:153578575:153579276:153579409:153579507:153579571,	153579277	153579409	153579299	153579299	Nonsense_Mutation	G	T	p.C2378*
UCEC	TCGA-D1-A167-01	FLNA	ENST00000369850.3,ENST00000422373.1	chrX	153596209:153596458:153599240:153599729:153602873:153602994,	153599241	153599729	153599478	153599478	Nonsense_Mutation	G	A	p.Q46*
UCEC	TCGA-B5-A0JY-01	TMLHE	ENST00000334398.3	chrX	154722017:154722156:154736558:154736795:154741333:154741453,	154736559	154736795	154736575	154736575	Nonsense_Mutation	C	A	p.E327*
UCEC	TCGA-AP-A0LM-01	VAMP7	ENST00000479687.1	chrX	155111040:155111111:155119120:155119296:155125285:155125343,	155119121	155119296	155119217	155119217	Nonsense_Mutation	G	T	p.E30*
UCEC	TCGA-AP-A0LM-01	VAMP7	ENST00000488344.1	chrX	155111040:155111111:155119120:155119275:155125285:155125343,155111040:155111111:155119120:155119275:155127775:155127913,	155119121	155119275	155119217	155119217	Nonsense_Mutation	G	T	p.E30*
UCS	TCGA-N8-A4PN-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745259	135745259	Nonsense_Mutation	G	A	p.Q395X
UCS	TCGA-NF-A4WX-01	HFE	ENST00000483782.1	chr6	26087666:26087744:26091068:26091817:26092912:26093188,	26091069	26091817	26091203	26091203	Nonsense_Mutation	C	T	p.R71X
UCS	TCGA-NF-A4WX-01	HFE	ENST00000317896.7	chr6	26087666:26087744:26091068:26091332:26091541:26091817,26087666:26087744:26091068:26091332:26092912:26093188,	26091069	26091332	26091203	26091203	Nonsense_Mutation	C	T	p.R71X
UCS	TCGA-N9-A4Q8-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573982	7573982	Nonsense_Mutation	C	A	p.E349X
UCS	TCGA-N9-A4Q8-01	PCDH7	ENST00000543491.1	chr4	30726062:30726218:30921774:30921991:31144094:31144353,	30921775	30921991	30921970	30921970	Nonsense_Mutation	G	T	p.E1124X
UCS	TCGA-ND-A4W6-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73094132:73094276:73096101:73096911:73100064:73100275,	73096102	73096911	73096839	73096839	Nonsense_Mutation	C	T	p.Q361X
UCS	TCGA-ND-A4W6-01	MFN1	ENST00000480636.1,ENST00000263969.5,ENST00000471841.1	chr3	179094917:179094956:179095131:179095236:179103356:179103509,179094917:179094956:179095131:179095236:179096128:179096231,	179095132	179095236	179095162	179095162	Nonsense_Mutation	C	T	p.R419X
UCS	TCGA-NF-A4X2-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42360910	42360910	Nonsense_Mutation	G	T	p.E615X
UCS	TCGA-NA-A5I1-01	PDCD5	ENST00000590247.2,ENST00000586035.1,ENST00000221784.4,ENST00000586316.1	chr19	33075863:33075917:33077763:33077835:33078158:33078203,33076721:33076813:33077763:33077835:33078158:33078203,	33077764	33077835	33077794	33077794	Nonsense_Mutation	A	T	p.K97X
UCS	TCGA-N5-A4RM-01	GLYCTK	ENST00000436784.2,ENST00000473032.1,ENST00000354773.4,ENST00000486393.1,ENST00000305690.8	chr3	52321871:52321892:52324319:52324735:52324975:52325127,	52324320	52324735	52324395	52324395	Nonsense_Mutation	C	T	p.R13X
UCS	TCGA-N5-A4RJ-01	GTF3A	ENST00000470606.1,ENST00000381140.4,ENST00000439403.1,ENST00000419181.1,ENST00000482655.1	chr13	28009112:28009171:28009269:28009329:28009569:28009825,	28009270	28009329	28009312	28009312	Nonsense_Mutation	A	T	p.K306X
UCS	TCGA-ND-A4WC-01	CACUL1	ENST00000369151.3,ENST00000544392.1	chr10	120446109:120446153:120450776:120450915:120454652:120454742,	120450777	120450915	120450802	120450802	Nonsense_Mutation	C	A	p.E334X
UCS	TCGA-ND-A4WC-01	PCDH15	ENST00000463095.1,ENST00000320301.6,ENST00000448885.1,ENST00000437009.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55616934:55617023:55626401:55626617:55663002:55663130,	55626402	55626617	55626542	55626542	Nonsense_Mutation	C	A	p.E1198X
UCS	TCGA-ND-A4WC-01	FANK1	ENST00000368693.1	chr10	127661998:127662064:127668729:127668907:127677119:127677244,127585179:127585224:127668729:127668907:127677119:127677208,	127668730	127668907	127668792	127668792	Nonsense_Mutation	G	T	p.E26X
UCS	TCGA-ND-A4WC-01	SFXN4	ENST00000484960.1	chr10	120905801:120905865:120907286:120907372:120914573:120914635,120900767:120900831:120907286:120907372:120914573:120914635,	120907287	120907372	120907363	120907363	Nonsense_Mutation	C	A	p.E248X
UCS	TCGA-ND-A4WC-01	SEPHS1	ENST00000327347.5,ENST00000545675.1,ENST00000378614.4,ENST00000537130.1	chr10	13371697:13371788:13375816:13375971:13378242:13378350,	13375817	13375971	13375827	13375827	Nonsense_Mutation	C	A	p.E184X
UCS	TCGA-ND-A4WC-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46120030:46120085:46121398:46122553:46135263:46135411,	46121399	46122553	46122112	46122112	Nonsense_Mutation	C	A	p.E387X
UCS	TCGA-ND-A4WC-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96028685:96028793:96030242:96030359:96033318:96033477,	96030243	96030359	96030304	96030304	Nonsense_Mutation	C	A	p.S1484X
UCS	TCGA-ND-A4WC-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790722	133790722	Nonsense_Mutation	A	C	p.Y966X
UCS	TCGA-ND-A4WC-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108164111:108164204:108165653:108165786:108168013:108168109,	108165654	108165786	108165729	108165729	Nonsense_Mutation	C	T	p.R1618X
UCS	TCGA-ND-A4WC-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000530582.1,ENST00000533792.1	chr11	7662709:7662851:7663528:7663657:7669617:7669768,	7663529	7663657	7663587	7663587	Nonsense_Mutation	C	T	p.R526X
UCS	TCGA-ND-A4WC-01	TMX2	ENST00000524972.1	chr11	57505079:57505140:57506135:57506511:57506602:57506732,	57506136	57506511	57506209	57506209	Nonsense_Mutation	C	A	p.S172X
UCS	TCGA-ND-A4WC-01	CHORDC1	ENST00000320585.6,ENST00000525317.1,ENST00000457199.2	chr11	89943703:89943762:89944382:89944486:89947185:89947343,	89944383	89944486	89944398	89944398	Nonsense_Mutation	C	A	p.E140X
UCS	TCGA-ND-A4WC-01	RFC5	ENST00000543153.1,ENST00000392542.2,ENST00000229043.3,ENST00000454402.2	chr12	118465766:118465835:118467575:118467630:118468986:118469241,	118467576	118467630	118467596	118467596	Nonsense_Mutation	C	T	p.R298X
UCS	TCGA-ND-A4WC-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132476717:132476775:132479411:132479501:132489621:132489729,	132479412	132479501	132479477	132479477	Nonsense_Mutation	G	T	p.E935X
UCS	TCGA-ND-A4WC-01	NR2C1	ENST00000393101.3,ENST00000546367.1,ENST00000552861.1,ENST00000330677.7	chr12	95456283:95456514:95461106:95461167:95467155:95467279,	95461107	95461167	95461145	95461145	Nonsense_Mutation	C	A	p.E6X
UCS	TCGA-ND-A4WC-01	SLC6A15	ENST00000450363.3,ENST00000266682.5	chr12	85279689:85279847:85285610:85286087:85306301:85306484,	85285611	85286087	85285788	85285788	Nonsense_Mutation	C	A	p.E38X
UCS	TCGA-ND-A4WC-01	NUP107	ENST00000535718.1,ENST00000229179.4,ENST00000539906.1,ENST00000378905.2	chr12	69090630:69090702:69096515:69096564:69103017:69103045,69094505:69094633:69096515:69096564:69103017:69103045,	69096516	69096564	69096538	69096538	Nonsense_Mutation	G	T	p.E235X
UCS	TCGA-ND-A4WC-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937070	48937070	Nonsense_Mutation	G	T	p.E280X
UCS	TCGA-ND-A4WC-01	SGCG	ENST00000537476.1,ENST00000218867.3,ENST00000545013.1	chr13	23824768:23824856:23853497:23853617:23869553:23869626,	23853498	23853617	23853608	23853608	Nonsense_Mutation	C	T	p.R166X
UCS	TCGA-ND-A4WC-01	SACS	ENST00000382292.3,ENST00000402364.1,ENST00000455470.1,ENST00000382298.3	chr13	23928657:23930146:23932473:23932620:23939304:23939416,	23932474	23932620	23932558	23932558	Nonsense_Mutation	C	A	p.E174X
UCS	TCGA-ND-A4WC-01	ATG2B	ENST00000359933.4	chr14	96798641:96798747:96798837:96798992:96800024:96800210,	96798838	96798992	96798990	96798990	Nonsense_Mutation	C	A	p.E404X
UCS	TCGA-ND-A4WC-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88665027:88665120:88666198:88666356:88675341:88675459,	88666199	88666356	88666313	88666313	Nonsense_Mutation	C	T	p.R349X
UCS	TCGA-ND-A4WC-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645132	67645132	Nonsense_Mutation	G	T	p.E133X
UCS	TCGA-ND-A4WC-01	TVP23B	ENST00000574294.1	chr17	18692675:18692748:18694208:18694273:18700891:18700981,	18694209	18694273	18694243	18694243	Nonsense_Mutation	C	T	p.R44X
UCS	TCGA-ND-A4WC-01	TVP23B	ENST00000575261.1,ENST00000574226.1,ENST00000307767.8,ENST00000476139.1,ENST00000581733.1	chr17	18692675:18692748:18694208:18694353:18700891:18700981,	18694209	18694353	18694243	18694243	Nonsense_Mutation	C	T	p.R44X
UCS	TCGA-ND-A4WC-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213X
UCS	TCGA-ND-A4WC-01	ALDH16A1	ENST00000433981.2,ENST00000593417.1	chr19	49956555:49956678:49962926:49963105:49964078:49964156,	49962927	49963105	49963000	49963000	Nonsense_Mutation	C	T	p.R132X
UCS	TCGA-ND-A4WC-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450260	55450260	Nonsense_Mutation	C	A	p.E643X
UCS	TCGA-ND-A4WC-01	CLEC17A	ENST00000397439.2,ENST00000547437.1,ENST00000339847.5,ENST00000551730.1,ENST00000417570.1	chr19	14705328:14705361:14705443:14705494:14705570:14705612,	14705444	14705494	14705455	14705455	Nonsense_Mutation	G	T	p.E108X
UCS	TCGA-ND-A4WC-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836059	35836059	Nonsense_Mutation	C	T	p.R338X
UCS	TCGA-ND-A4WC-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404618	91404618	Nonsense_Mutation	C	A	p.E765X
UCS	TCGA-ND-A4WC-01	ALG6	ENST00000603108.1,ENST00000371108.4,ENST00000263440.4	chr1	63894403:63894472:63894598:63894797:63902493:63902804,	63894599	63894797	63894714	63894714	Nonsense_Mutation	G	T	p.E415X
UCS	TCGA-ND-A4WC-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511762	169511762	Nonsense_Mutation	C	A	p.E856X
UCS	TCGA-ND-A4WC-01	CAPN9	ENST00000354537.1	chr1	230883178:230883455:230891082:230891152:230895257:230895376,	230891083	230891152	230891101	230891101	Nonsense_Mutation	G	T	p.E78X
UCS	TCGA-ND-A4WC-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213414614	213414614	Nonsense_Mutation	G	T	p.E599X
UCS	TCGA-ND-A4WC-01	SNX27	ENST00000368843.3,ENST00000458013.2	chr1	151584557:151584988:151611363:151611595:151630710:151630903,	151611364	151611595	151611416	151611416	Nonsense_Mutation	C	T	p.R122X
UCS	TCGA-ND-A4WC-01	PPIE	ENST00000497370.1,ENST00000475350.1,ENST00000480169.1,ENST00000495526.1,ENST00000482751.1,ENST00000474804.1,ENST00000485507.1,ENST00000470213.1,ENST00000356511.2,ENST00000324379.5,ENST00000372830.1,ENST00000470018.1	chr1	40205836:40205935:40207037:40207081:40207566:40207593,	40207038	40207081	40207070	40207070	Nonsense_Mutation	G	T	p.E55X
UCS	TCGA-ND-A4WC-01	MAPRE1	ENST00000375571.5	chr20	31421522:31421668:31424439:31424647:31427540:31427662,	31424440	31424647	31424467	31424467	Nonsense_Mutation	G	T	p.G99X
UCS	TCGA-ND-A4WC-01	ITCH	ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33077626:33077731:33080305:33080402:33092135:33092208,	33080306	33080402	33080315	33080315	Nonsense_Mutation	G	T	p.E818X
UCS	TCGA-ND-A4WC-01	NBAS	ENST00000429842.1,ENST00000281513.5	chr2	15542291:15542425:15555669:15555843:15557650:15557705,	15555670	15555843	15555741	15555741	Nonsense_Mutation	C	A	p.E956X
UCS	TCGA-ND-A4WC-01	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000485398.1,ENST00000272427.6	chr2	72727056:72727101:72740260:72740381:72741762:72741809,	72740261	72740381	72740314	72740314	Nonsense_Mutation	C	A	p.E372X
UCS	TCGA-ND-A4WC-01	WDSUB1	ENST00000358147.4	chr2	160104882:160105023:160112706:160112886:160132056:160132149,	160112707	160112886	160112755	160112755	Nonsense_Mutation	C	A	p.E362X
UCS	TCGA-ND-A4WC-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103196	168103196	Nonsense_Mutation	C	A	p.S1765X
UCS	TCGA-ND-A4WC-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476392	32476392	Nonsense_Mutation	G	A	p.R181X
UCS	TCGA-ND-A4WC-01	DHX57	ENST00000460193.1,ENST00000295373.6,ENST00000457308.1,ENST00000452978.1	chr2	39053657:39053831:39055481:39055578:39064972:39065089,	39055482	39055578	39055483	39055483	Nonsense_Mutation	G	A	p.R880X
UCS	TCGA-ND-A4WC-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551579	165551579	Nonsense_Mutation	C	A	p.E813X
UCS	TCGA-ND-A4WC-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551579	165551579	Nonsense_Mutation	C	A	p.E813X
UCS	TCGA-ND-A4WC-01	KCMF1	ENST00000409785.4	chr2	85198215:85198590:85255011:85255179:85262138:85262248,	85255012	85255179	85255047	85255047	Nonsense_Mutation	C	T	p.R18X
UCS	TCGA-ND-A4WC-01	ICA1L	ENST00000358299.2,ENST00000392237.2	chr2	203650640:203650730:203653552:203653810:203661612:203661687,	203653553	203653810	203653775	203653775	Nonsense_Mutation	C	A	p.E341X
UCS	TCGA-ND-A4WC-01	MGAT4A	ENST00000393487.1,ENST00000409391.1,ENST00000484936.1	chr2	99291497:99291638:99294766:99294934:99342701:99343030,	99294767	99294934	99294911	99294911	Nonsense_Mutation	C	A	p.E40X
UCS	TCGA-ND-A4WC-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557675	210557675	Nonsense_Mutation	G	T	p.E261X
UCS	TCGA-ND-A4WC-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557675	210557675	Nonsense_Mutation	G	T	p.E261X
UCS	TCGA-ND-A4WC-01	ALS2CR12	ENST00000286190.5,ENST00000494171.1,ENST00000405148.2,ENST00000392257.3,ENST00000439709.1	chr2	202153273:202153504:202154179:202154289:202154418:202154445,	202154180	202154289	202154232	202154232	Nonsense_Mutation	C	A	p.E387X
UCS	TCGA-ND-A4WC-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1160X
UCS	TCGA-ND-A4WC-01	KIAA1257	ENST00000511438.1,ENST00000515659.1,ENST00000510149.1,ENST00000265068.5	chr3	128695855:128695909:128696887:128697028:128706458:128706672,	128696888	128697028	128696954	128696954	Nonsense_Mutation	C	A	p.E248X
UCS	TCGA-ND-A4WC-01	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49159595:49159803:49160136:49160485:49160564:49160806,	49160137	49160485	49160170	49160170	Nonsense_Mutation	C	A	p.E1514X
UCS	TCGA-ND-A4WC-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368058	37368058	Nonsense_Mutation	G	T	p.E1583X
UCS	TCGA-ND-A4WC-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897168	36897168	Nonsense_Mutation	C	A	p.E1305X
UCS	TCGA-ND-A4WC-01	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016237	167016237	Nonsense_Mutation	C	A	p.E579X
UCS	TCGA-ND-A4WC-01	SEC61A1	ENST00000243253.3,ENST00000424880.2,ENST00000464451.1	chr3	127783719:127783880:127785796:127785994:127786263:127786455,	127785797	127785994	127785899	127785899	Nonsense_Mutation	C	T	p.Q294X
UCS	TCGA-ND-A4WC-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37107714:37107816:37116514:37116607,37107300:37107433:37107714:37107816:37114280:37114373,	37107715	37107816	37107798	37107798	Nonsense_Mutation	C	A	p.E495X
UCS	TCGA-ND-A4WC-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2,ENST00000431944.1	chr3	46496918:46496932:46497285:46497468:46497779:46497888,	46497286	46497468	46497452	46497452	Nonsense_Mutation	A	C	p.Y111X
UCS	TCGA-ND-A4WC-01	SENP5	ENST00000419026.1,ENST00000323460.5	chr3	196630403:196630481:196650284:196650422:196654666:196654750,	196650285	196650422	196650379	196650379	Nonsense_Mutation	C	A	p.S660X
UCS	TCGA-ND-A4WC-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123900386:123900541:123949340:123949550:123977541:123977595,	123949341	123949550	123949434	123949434	Nonsense_Mutation	C	T	p.R655X
UCS	TCGA-ND-A4WC-01	TRIML2	ENST00000326754.3,ENST00000511771.1,ENST00000512729.1,ENST00000536972.1	chr4	189020188:189020329:189022209:189022404:189025990:189026086,	189022210	189022404	189022278	189022278	Nonsense_Mutation	C	A	p.E88X
UCS	TCGA-ND-A4WC-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542357	187542357	Nonsense_Mutation	G	A	p.R1795X
UCS	TCGA-ND-A4WC-01	KIAA0232	ENST00000307659.5,ENST00000425103.1	chr4	6825911:6826411:6843793:6843931:6858890:6858957,	6843794	6843931	6843914	6843914	Nonsense_Mutation	C	T	p.R118X
UCS	TCGA-ND-A4WC-01	ACSL1	ENST00000454703.2,ENST00000506733.1,ENST00000437665.3,ENST00000281455.2,ENST00000504900.1,ENST00000513317.1,ENST00000504342.1,ENST00000515030.1,ENST00000507295.1	chr4	185694996:185695029:185697637:185697816:185698037:185698137,	185697638	185697816	185697685	185697685	Nonsense_Mutation	G	A	p.R237X
UCS	TCGA-ND-A4WC-01	AFF1	ENST00000511442.1,ENST00000507468.1,ENST00000395146.4,ENST00000503477.1	chr4	87928420:87928576:87967317:87967438:87967846:87968042,87869649:87869723:87967317:87967438:87967846:87968042,	87967318	87967438	87967346	87967346	Nonsense_Mutation	C	T	p.R23X
UCS	TCGA-ND-A4WC-01	REEP5	ENST00000497856.2,ENST00000511865.2,ENST00000545426.1	chr5	112214529:112214532:112238076:112238215:112256859:112256953,112222711:112222880:112238076:112238215:112256859:112256953,112228146:112228514:112238076:112238215:112256859:112256953,	112238077	112238215	112238187	112238187	Nonsense_Mutation	C	A	p.E81X
UCS	TCGA-ND-A4WC-01	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1	chr5	33463857:33463930:33466975:33467090:33467664:33467943,	33466976	33467090	33467054	33467054	Nonsense_Mutation	C	T	p.R696X
UCS	TCGA-ND-A4WC-01	PDE8B	ENST00000503963.1,ENST00000333194.4,ENST00000342343.4,ENST00000264917.5	chr5	76640677:76640756:76645243:76645384:76646889:76646943,	76645244	76645384	76645304	76645304	Nonsense_Mutation	G	T	p.E313X
UCS	TCGA-ND-A4WC-01	SNX24	ENST00000511211.1,ENST00000261369.4,ENST00000506996.1,ENST00000395451.4,ENST00000513881.1,ENST00000502387.1,ENST00000511545.1	chr5	122272428:122272512:122281749:122281854:122335606:122335679,	122281750	122281854	122281828	122281828	Nonsense_Mutation	C	T	p.R75X
UCS	TCGA-ND-A4WC-01	SPARC	ENST00000231061.4,ENST00000539687.1	chr5	151051133:151051255:151052689:151052777:151054172:151054232,	151052690	151052777	151052738	151052738	Nonsense_Mutation	C	A	p.E54X
UCS	TCGA-ND-A4WC-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949485	116949485	Nonsense_Mutation	G	T	p.E539X
UCS	TCGA-ND-A4WC-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111678216:111678328:111680024:111680217:111685055:111685181,	111680025	111680217	111680169	111680169	Nonsense_Mutation	G	A	p.R2310X
UCS	TCGA-ND-A4WC-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671492	151671492	Nonsense_Mutation	G	T	p.E656X
UCS	TCGA-ND-A4WC-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484298	56484298	Nonsense_Mutation	G	A	p.R1512X
UCS	TCGA-ND-A4WC-01	COL9A1	ENST00000357250.6,ENST00000370496.3	chr6	70993439:70993523:71003869:71004266:71009745:71009878,	71003870	71004266	71004214	71004214	Nonsense_Mutation	G	A	p.R118X
UCS	TCGA-ND-A4WC-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000361499.3	chr6	71232215:71232289:71233669:71233824:71234045:71234302,71232215:71232289:71233669:71233824:71234633:71234894,	71233670	71233824	71233777	71233777	Nonsense_Mutation	C	A	p.S404X
UCS	TCGA-ND-A4WC-01	ITGB8	ENST00000222573.4,ENST00000537992.1,ENST00000478974.1	chr7	20420288:20420454:20421349:20421508:20431025:20431121,	20421350	20421508	20421365	20421365	Nonsense_Mutation	C	T	p.R273X
UCS	TCGA-ND-A4WC-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117227792:117227887:117230406:117230493:117231987:117232711,	117230407	117230493	117230480	117230480	Nonsense_Mutation	G	T	p.E585X
UCS	TCGA-ND-A4WC-01	SND1	ENST00000470463.1,ENST00000354725.3	chr7	127714553:127714742:127721411:127721553:127724775:127724811,	127721412	127721553	127721475	127721475	Nonsense_Mutation	C	T	p.R678X
UCS	TCGA-ND-A4WC-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75156775	75156775	Nonsense_Mutation	C	A	p.E632X
UCS	TCGA-ND-A4WC-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100533126:100533238:100568677:100568881:100587885:100588012,	100568678	100568881	100568703	100568703	Nonsense_Mutation	C	T	p.R1616X
UCS	TCGA-ND-A4WC-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000518719.1	chr8	101105674:101105737:101117601:101117630:101118124:101118190,	101117602	101117630	101117607	101117607	Nonsense_Mutation	C	A	p.E17X
UCS	TCGA-ND-A4WC-01	INTS8	ENST00000523352.1,ENST00000523731.1,ENST00000447247.1,ENST00000520526.1,ENST00000524333.1,ENST00000521155.1	chr8	95879555:95879565:95884111:95884230:95885601:95885705,	95884112	95884230	95884164	95884164	Nonsense_Mutation	C	T	p.R823X
UCS	TCGA-ND-A4WC-01	TLE4	ENST00000376534.4,ENST00000455913.1,ENST00000265284.6,ENST00000425506.1,ENST00000376537.4,ENST00000428713.1,ENST00000376552.2,ENST00000376520.4,ENST00000376544.3,ENST00000462803.1,ENST00000435650.1,ENST00000466428.1,ENST00000485159.1	chr9	82189787:82189851:82191047:82191092:82227570:82227633,	82191048	82191092	82191078	82191078	Nonsense_Mutation	G	T	p.E80X
UCS	TCGA-ND-A4WC-01	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20414132	20414132	Nonsense_Mutation	C	A	p.E238X
UCS	TCGA-ND-A4WC-01	MID1	ENST00000380779.1,ENST00000380780.1,ENST00000453318.2,ENST00000413894.1,ENST00000317552.4,ENST00000380787.1,ENST00000380782.2,ENST00000380785.1	chrX	10463623:10463731:10491131:10491227:10534927:10535643,	10491132	10491227	10491182	10491182	Nonsense_Mutation	C	A	p.E236X
UCS	TCGA-N8-A4PP-01	SORCS1	ENST00000344440.6,ENST00000369698.1,ENST00000452214.1,ENST00000263054.6	chr10	108357108:108357208:108366923:108367055:108371668:108371745,	108366924	108367055	108366950	108366950	Nonsense_Mutation	T	A	p.K1047X
UCS	TCGA-N6-A4V9-01	CD300A	ENST00000392625.3,ENST00000577511.1,ENST00000582319.1,ENST00000310828.5,ENST00000360141.3	chr17	72470670:72470824:72473574:72473669:72477427:72477465,	72473575	72473669	72473654	72473654	Nonsense_Mutation	C	T	p.Q205X
UCS	TCGA-NA-A4R1-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233X
UCS	TCGA-NA-A4R1-01	METTL14	ENST00000506780.1,ENST00000502564.1,ENST00000388822.5	chr4	119618336:119618478:119621704:119621797:119625089:119625206,	119621705	119621797	119621741	119621741	Nonsense_Mutation	C	T	p.R228X
UCS	TCGA-NA-A4R1-01	SLC25A27	ENST00000411689.2	chr6	46620721:46621035:46623579:46623771:46626698:46626783,	46623580	46623771	46623609	46623609	Nonsense_Mutation	C	T	p.R46X
UCS	TCGA-QN-A5NN-01	ARL15	ENST00000505383.1,ENST00000507646.2,ENST00000505630.1,ENST00000504924.1	chr5	53450409:53450469:53467613:53467758:53606124:53606245,53450409:53450469:53467613:53467758:53606261:53606403,	53467614	53467758	53467719	53467719	Nonsense_Mutation	G	A	p.R30X
UCS	TCGA-N5-A4RT-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131388518:131388608:131404718:131404802:131415385:131415460,	131404719	131404802	131404727	131404727	Nonsense_Mutation	G	A	p.R195X
UCS	TCGA-N7-A59B-01	TBXAS1	ENST00000448866.1,ENST00000458722.1,ENST00000425687.1,ENST00000436047.2,ENST00000422328.1,ENST00000336425.5,ENST00000416849.2,ENST00000263552.6	chr7	139706890:139706982:139715522:139715660:139719824:139720079,139706890:139706982:139715522:139715660:139717470:139717633,	139715523	139715660	139715631	139715631	Nonsense_Mutation	G	A	p.W492X
UCS	TCGA-N7-A59B-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35380466:35380636:35381096:35381212:35381552:35381716,	35381097	35381212	35381192	35381192	Nonsense_Mutation	C	T	p.Q742X
UCS	TCGA-N8-A4PI-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645939	54645939	Nonsense_Mutation	A	T	p.Y70X
UCS	TCGA-N8-A4PI-01	POLQ	ENST00000264233.5	chr3	121258279:121258436:121260195:121260326:121263573:121263753,	121260196	121260326	121260219	121260219	Nonsense_Mutation	T	A	p.K151X
UCS	TCGA-N9-A4PZ-01	ADIPOR1	ENST00000436244.1,ENST00000426229.1,ENST00000340990.5,ENST00000417068.1	chr1	202914110:202914297:202915566:202915738:202917431:202917548,	202915567	202915738	202915580	202915580	Nonsense_Mutation	C	T	p.W139X
UCS	TCGA-ND-A4WF-01	ADAMTSL1	ENST00000380566.4,ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18574027:18574264:18622240:18622367:18635940:18636015,	18622241	18622367	18622331	18622331	Nonsense_Mutation	C	T	p.R189X
UCS	TCGA-NA-A4QV-01	SIPA1L3	ENST00000222345.6	chr19	38631823:38632075:38633212:38633350:38643479:38643607,	38633213	38633350	38633333	38633333	Nonsense_Mutation	C	G	p.Y1172X
UCS	TCGA-N5-A4R8-01	NRAP	ENST00000359988.3,ENST00000369358.4	chr10	115401123:115401231:115402692:115402797:115405583:115405700,	115402693	115402797	115402734	115402734	Nonsense_Mutation	G	A	p.Q392X
UCS	TCGA-N5-A4R8-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4737296	4737296	Nonsense_Mutation	C	A	p.G258X
UCS	TCGA-N5-A4RD-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677691	88677691	Nonsense_Mutation	C	T	p.R408X
UCS	TCGA-N9-A4Q7-01	TASP1	ENST00000337743.4,ENST00000465381.1	chr20	13415690:13415801:13463873:13463984:13509079:13509158,	13463874	13463984	13463939	13463939	Nonsense_Mutation	G	C	p.S307X
UCS	TCGA-N9-A4Q7-01	F9	ENST00000394090.2	chrX	138623245:138623348:138630521:138630650:138633220:138633406,138619520:138619545:138630521:138630650:138633220:138633406,	138630522	138630650	138630629	138630629	Nonsense_Mutation	C	T	p.Q167X
UCS	TCGA-N8-A4PQ-01	TTLL6	ENST00000490027.1,ENST00000433608.2,ENST00000393382.3	chr17	46846350:46846616:46847089:46847459:46862284:46862563,	46847090	46847459	46847315	46847315	Nonsense_Mutation	G	A	p.Q729X
UCS	TCGA-N8-A56S-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579389	7579389	Nonsense_Mutation	G	A	p.Q100X
UCS	TCGA-N7-A4Y0-01	UBE2G1	ENST00000572484.1,ENST00000396981.2,ENST00000571953.1	chr17	4192524:4192703:4200011:4200109:4210315:4210418,	4200012	4200109	4200057	4200057	Nonsense_Mutation	G	A	p.R68X
UCS	TCGA-N7-A4Y0-01	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000450235.1,ENST00000402746.1	chr7	1937835:1938026:1976322:1976533:1997263:1997354,	1976323	1976533	1976422	1976422	Nonsense_Mutation	G	A	p.R570X
UCS	TCGA-N7-A4Y0-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98232094:98232213:98238315:98238441:98239040:98239139,	98238316	98238441	98238411	98238411	Nonsense_Mutation	C	A	p.G545X
UCS	TCGA-NG-A4VW-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000393824.3	chr7	101740643:101740781:101747615:101747739:101754977:101755006,	101747616	101747739	101747648	101747648	Nonsense_Mutation	C	T	p.R158X
UCS	TCGA-N8-A4PO-01	ARMC1	ENST00000276569.3,ENST00000518908.1	chr8	66517667:66517773:66525478:66525668:66534497:66534589,	66525479	66525668	66525567	66525567	Nonsense_Mutation	G	T	p.S126X
UCS	TCGA-N8-A4PO-01	NR4A3	ENST00000395097.2,ENST00000330847.1,ENST00000338488.4	chr9	102590322:102591275:102594970:102595100:102595563:102595736,	102594971	102595100	102595040	102595040	Nonsense_Mutation	C	T	p.R352X
UCS	TCGA-N9-A4Q4-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745373	135745373	Nonsense_Mutation	G	A	p.R357X
UCS	TCGA-N5-A4RJ-01	TTC27	ENST00000317907.4	chr2	32961851:32961883:32983358:32983586:33002948:33003047,	32983359	32983586	32983377	32983377	Nonsense_Mutation	C	T	p.Q491*
UCS	TCGA-N5-A4RJ-01	GTF3A	ENST00000470606.1,ENST00000381140.4,ENST00000439403.1,ENST00000419181.1,ENST00000482655.1	chr13	28009112:28009171:28009269:28009329:28009569:28009825,	28009270	28009329	28009312	28009312	Nonsense_Mutation	A	T	p.K306*
UCS	TCGA-N5-A59F-01	LHX8	ENST00000294638.5,ENST00000356261.3	chr1	75606669:75606791:75608802:75609023:75609529:75609633,	75608803	75609023	75608914	75608914	Nonsense_Mutation	C	A	p.C167*
UCS	TCGA-N5-A4RT-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131388518:131388608:131404718:131404802:131415385:131415460,	131404719	131404802	131404727	131404727	Nonsense_Mutation	G	A	p.R195*
UCS	TCGA-N7-A59B-01	TBXAS1	ENST00000448866.1,ENST00000458722.1,ENST00000425687.1,ENST00000436047.2,ENST00000422328.1,ENST00000336425.5,ENST00000416849.2,ENST00000263552.6	chr7	139706890:139706982:139715522:139715660:139719824:139720079,139706890:139706982:139715522:139715660:139717470:139717633,	139715523	139715660	139715631	139715631	Nonsense_Mutation	G	A	p.W446*
UCS	TCGA-N7-A59B-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35380466:35380636:35381096:35381212:35381552:35381716,	35381097	35381212	35381192	35381192	Nonsense_Mutation	C	T	p.Q742*
UCS	TCGA-N5-A4RM-01	GLYCTK	ENST00000436784.2,ENST00000473032.1,ENST00000354773.4,ENST00000486393.1,ENST00000305690.8	chr3	52321871:52321892:52324319:52324735:52324975:52325127,	52324320	52324735	52324395	52324395	Nonsense_Mutation	C	T	p.R13*
UCS	TCGA-NF-A4X2-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42360910	42360910	Nonsense_Mutation	G	T	p.E615*
UCS	TCGA-N8-A4PO-01	ARMC1	ENST00000276569.3,ENST00000518908.1	chr8	66517667:66517773:66525478:66525668:66534497:66534589,	66525479	66525668	66525567	66525567	Nonsense_Mutation	G	T	p.S126*
UCS	TCGA-N8-A4PO-01	NR4A3	ENST00000395097.2,ENST00000330847.1,ENST00000338488.4	chr9	102590322:102591275:102594970:102595100:102595563:102595736,	102594971	102595100	102595040	102595040	Nonsense_Mutation	C	T	p.R352*
UCS	TCGA-N8-A56S-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579389	7579389	Nonsense_Mutation	G	A	p.Q100*
UCS	TCGA-NA-A5I1-01	PDCD5	ENST00000590247.2,ENST00000586035.1,ENST00000221784.4,ENST00000586316.1	chr19	33075863:33075917:33077763:33077835:33078158:33078203,33076721:33076813:33077763:33077835:33078158:33078203,	33077764	33077835	33077794	33077794	Nonsense_Mutation	A	T	p.K97*
UCS	TCGA-N8-A4PQ-01	TTLL6	ENST00000490027.1,ENST00000433608.2,ENST00000393382.3	chr17	46846350:46846616:46847089:46847459:46862284:46862563,	46847090	46847459	46847315	46847315	Nonsense_Mutation	G	A	p.Q729*
UCS	TCGA-ND-A4W6-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73094132:73094276:73096101:73096911:73100064:73100275,	73096102	73096911	73096839	73096839	Nonsense_Mutation	C	T	p.Q361*
UCS	TCGA-ND-A4W6-01	MFN1	ENST00000480636.1,ENST00000263969.5,ENST00000471841.1	chr3	179094917:179094956:179095131:179095236:179103356:179103509,179094917:179094956:179095131:179095236:179096128:179096231,	179095132	179095236	179095162	179095162	Nonsense_Mutation	C	T	p.R419*
UCS	TCGA-ND-A4WC-01	NBAS	ENST00000429842.1,ENST00000281513.5	chr2	15542291:15542425:15555669:15555843:15557650:15557705,	15555670	15555843	15555741	15555741	Nonsense_Mutation	C	A	p.E956*
UCS	TCGA-ND-A4WC-01	ZC2HC1A	ENST00000521176.1,ENST00000263849.4	chr8	79590797:79590914:79598701:79598843:79601456:79601608,	79598702	79598843	79598747	79598747	Nonsense_Mutation	G	T	p.E86*
UCS	TCGA-ND-A4WC-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96028685:96028793:96030242:96030359:96033318:96033477,	96030243	96030359	96030304	96030304	Nonsense_Mutation	C	A	p.S1484*
UCS	TCGA-ND-A4WC-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949485	116949485	Nonsense_Mutation	G	T	p.E539*
UCS	TCGA-ND-A4WC-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711983	89711983	Nonsense_Mutation	G	T	p.E201*
UCS	TCGA-ND-A4WC-01	SND1	ENST00000470463.1,ENST00000354725.3	chr7	127714553:127714742:127721411:127721553:127724775:127724811,	127721412	127721553	127721475	127721475	Nonsense_Mutation	C	T	p.R678*
UCS	TCGA-ND-A4WC-01	KIAA0232	ENST00000307659.5,ENST00000425103.1	chr4	6825911:6826411:6843793:6843931:6858890:6858957,	6843794	6843931	6843914	6843914	Nonsense_Mutation	C	T	p.R118*
UCS	TCGA-ND-A4WC-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132476717:132476775:132479411:132479501:132489621:132489729,	132479412	132479501	132479477	132479477	Nonsense_Mutation	G	T	p.E971*
UCS	TCGA-ND-A4WC-01	SGCG	ENST00000537476.1,ENST00000218867.3,ENST00000545013.1	chr13	23824768:23824856:23853497:23853617:23869553:23869626,	23853498	23853617	23853608	23853608	Nonsense_Mutation	C	T	p.R166*
UCS	TCGA-ND-A4WC-01	AFF1	ENST00000511442.1,ENST00000507468.1,ENST00000395146.4,ENST00000503477.1	chr4	87928420:87928576:87967317:87967438:87967846:87968042,87869649:87869723:87967317:87967438:87967846:87968042,	87967318	87967438	87967346	87967346	Nonsense_Mutation	C	T	p.R16*
UCS	TCGA-ND-A4WC-01	REEP5	ENST00000497856.2,ENST00000511865.2,ENST00000545426.1	chr5	112214529:112214532:112238076:112238215:112256859:112256953,112222711:112222880:112238076:112238215:112256859:112256953,112228146:112228514:112238076:112238215:112256859:112256953,	112238077	112238215	112238187	112238187	Nonsense_Mutation	C	A	p.E81*
UCS	TCGA-ND-A4WC-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000530582.1,ENST00000533792.1	chr11	7662709:7662851:7663528:7663657:7669617:7669768,	7663529	7663657	7663587	7663587	Nonsense_Mutation	C	T	p.R526*
UCS	TCGA-ND-A4WC-01	NUP107	ENST00000535718.1,ENST00000229179.4,ENST00000539906.1,ENST00000378905.2	chr12	69090630:69090702:69096515:69096564:69103017:69103045,69094505:69094633:69096515:69096564:69103017:69103045,	69096516	69096564	69096538	69096538	Nonsense_Mutation	G	T	p.E235*
UCS	TCGA-ND-A4WC-01	APOD	ENST00000421243.1,ENST00000343267.3,ENST00000463719.1,ENST00000453131.1	chr3	195298147:195298236:195300720:195300842:195306209:195306366,	195300721	195300842	195300766	195300766	Nonsense_Mutation	G	T	p.S67*
UCS	TCGA-ND-A4WC-01	TRIML2	ENST00000326754.3,ENST00000511771.1,ENST00000512729.1,ENST00000536972.1	chr4	189020188:189020329:189022209:189022404:189025990:189026086,	189022210	189022404	189022278	189022278	Nonsense_Mutation	C	A	p.E88*
UCS	TCGA-ND-A4WC-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21659573:21659696:21675488:21675713:21677228:21677320,	21675489	21675713	21675657	21675657	Nonsense_Mutation	C	T	p.R1562*
UCS	TCGA-ND-A4WC-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103196	168103196	Nonsense_Mutation	C	A	p.S1765*
UCS	TCGA-ND-A4WC-01	ACTR10	ENST00000555337.1	chr14	58690355:58690419:58697116:58697198:58698783:58698826,58690500:58690574:58697116:58697198:58698783:58698826,58686411:58686447:58697116:58697198:58698783:58698826,	58697117	58697198	58697164	58697164	Nonsense_Mutation	C	A	p.S279*
UCS	TCGA-ND-A4WC-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67302906	67302906	Nonsense_Mutation	C	A	p.E250*
UCS	TCGA-ND-A4WC-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000518719.1	chr8	101105674:101105737:101117601:101117630:101118124:101118190,	101117602	101117630	101117607	101117607	Nonsense_Mutation	C	A	p.E17*
UCS	TCGA-ND-A4WC-01	SMARCA2	ENST00000302401.3,ENST00000349721.2,ENST00000382203.1,ENST00000324954.5,ENST00000382186.1,ENST00000357248.2,ENST00000382183.1,ENST00000382185.1,ENST00000382194.1	chr9	2186095:2186228:2191265:2191408:2192703:2192752,	2191266	2191408	2191349	2191349	Nonsense_Mutation	C	T	p.R1560*
UCS	TCGA-ND-A4WC-01	ALDH16A1	ENST00000433981.2,ENST00000593417.1	chr19	49956555:49956678:49962926:49963105:49964078:49964156,	49962927	49963105	49963000	49963000	Nonsense_Mutation	C	T	p.R132*
UCS	TCGA-ND-A4WC-01	MGAT4A	ENST00000393487.1,ENST00000409391.1,ENST00000484936.1	chr2	99291497:99291638:99294766:99294934:99342701:99343030,	99294767	99294934	99294911	99294911	Nonsense_Mutation	C	A	p.E40*
UCS	TCGA-ND-A4WC-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404618	91404618	Nonsense_Mutation	C	A	p.E765*
UCS	TCGA-ND-A4WC-01	SEPHS1	ENST00000327347.5,ENST00000545675.1,ENST00000378614.4,ENST00000537130.1	chr10	13371697:13371788:13375816:13375971:13378242:13378350,	13375817	13375971	13375827	13375827	Nonsense_Mutation	C	A	p.E184*
UCS	TCGA-ND-A4WC-01	FANK1	ENST00000368693.1	chr10	127661998:127662064:127668729:127668907:127677119:127677244,127585179:127585224:127668729:127668907:127677119:127677208,	127668730	127668907	127668792	127668792	Nonsense_Mutation	G	T	p.E20*
UCS	TCGA-ND-A4WC-01	ALS2CR12	ENST00000286190.5,ENST00000494171.1,ENST00000405148.2,ENST00000392257.3,ENST00000439709.1	chr2	202153273:202153504:202154179:202154289:202154418:202154445,	202154180	202154289	202154232	202154232	Nonsense_Mutation	C	A	p.E387*
UCS	TCGA-ND-A4WC-01	ITCH	ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33077626:33077731:33080305:33080402:33092135:33092208,	33080306	33080402	33080315	33080315	Nonsense_Mutation	G	T	p.E777*
UCS	TCGA-ND-A4WC-01	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016237	167016237	Nonsense_Mutation	C	A	p.E579*
UCS	TCGA-ND-A4WC-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897168	36897168	Nonsense_Mutation	C	A	p.E755*
UCS	TCGA-ND-A4WC-01	TLE4	ENST00000376534.4,ENST00000455913.1,ENST00000265284.6,ENST00000425506.1,ENST00000376537.4,ENST00000428713.1,ENST00000376552.2,ENST00000376520.4,ENST00000376544.3,ENST00000462803.1,ENST00000435650.1,ENST00000466428.1,ENST00000485159.1	chr9	82189787:82189851:82191047:82191092:82227570:82227633,	82191048	82191092	82191078	82191078	Nonsense_Mutation	G	T	p.E80*
UCS	TCGA-ND-A4WC-01	PIP5K1B	ENST00000478500.1,ENST00000541509.1,ENST00000440050.1,ENST00000437200.1,ENST00000265382.3	chr9	71478752:71478883:71491592:71491710:71503896:71504049,	71491593	71491710	71491678	71491678	Nonsense_Mutation	G	T	p.E96*
UCS	TCGA-ND-A4WC-01	NR2C1	ENST00000393101.3,ENST00000546367.1,ENST00000552861.1,ENST00000330677.7	chr12	95456283:95456514:95461106:95461167:95467155:95467279,	95461107	95461167	95461145	95461145	Nonsense_Mutation	C	A	p.E6*
UCS	TCGA-ND-A4WC-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790722	133790722	Nonsense_Mutation	A	C	p.Y966*
UCS	TCGA-ND-A4WC-01	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1	chr5	33463857:33463930:33466975:33467090:33467664:33467943,	33466976	33467090	33467054	33467054	Nonsense_Mutation	C	T	p.R663*
UCS	TCGA-ND-A4WC-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484298	56484298	Nonsense_Mutation	G	A	p.R1512*
UCS	TCGA-ND-A4WC-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368058	37368058	Nonsense_Mutation	G	T	p.E1561*
UCS	TCGA-ND-A4WC-01	CHORDC1	ENST00000320585.6,ENST00000525317.1,ENST00000457199.2	chr11	89943703:89943762:89944382:89944486:89947185:89947343,	89944383	89944486	89944398	89944398	Nonsense_Mutation	C	A	p.E140*
UCS	TCGA-ND-A4WC-01	ACSL1	ENST00000454703.2,ENST00000506733.1,ENST00000437665.3,ENST00000281455.2,ENST00000504900.1,ENST00000513317.1,ENST00000504342.1,ENST00000515030.1,ENST00000507295.1	chr4	185694996:185695029:185697637:185697816:185698037:185698137,	185697638	185697816	185697685	185697685	Nonsense_Mutation	G	A	p.R237*
UCS	TCGA-ND-A4WC-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557675	210557675	Nonsense_Mutation	G	T	p.E261*
UCS	TCGA-ND-A4WC-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557675	210557675	Nonsense_Mutation	G	T	p.E261*
UCS	TCGA-ND-A4WC-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578212	7578212	Nonsense_Mutation	G	A	p.R213*
UCS	TCGA-ND-A4WC-01	ALG6	ENST00000603108.1,ENST00000371108.4,ENST00000263440.4	chr1	63894403:63894472:63894598:63894797:63902493:63902804,	63894599	63894797	63894714	63894714	Nonsense_Mutation	G	T	p.E415*
UCS	TCGA-ND-A4WC-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742690	42742690	Nonsense_Mutation	C	A	p.E571*
UCS	TCGA-ND-A4WC-01	PPIE	ENST00000497370.1,ENST00000475350.1,ENST00000480169.1,ENST00000495526.1,ENST00000482751.1,ENST00000474804.1,ENST00000485507.1,ENST00000470213.1,ENST00000356511.2,ENST00000324379.5,ENST00000372830.1,ENST00000470018.1	chr1	40205836:40205935:40207037:40207081:40207566:40207593,	40207038	40207081	40207070	40207070	Nonsense_Mutation	G	T	p.E55*
UCS	TCGA-ND-A4WC-01	MYO5C	ENST00000443683.2,ENST00000261839.7,ENST00000560809.1,ENST00000558902.1	chr15	52537550:52537662:52538152:52538239:52539113:52539211,	52538153	52538239	52538226	52538226	Nonsense_Mutation	T	A	p.R665*
UCS	TCGA-ND-A4WC-01	SACS	ENST00000382292.3,ENST00000402364.1,ENST00000455470.1,ENST00000382298.3	chr13	23928657:23930146:23932473:23932620:23939304:23939416,	23932474	23932620	23932558	23932558	Nonsense_Mutation	C	A	p.E174*
UCS	TCGA-ND-A4WC-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836059	35836059	Nonsense_Mutation	C	T	p.R338*
UCS	TCGA-ND-A4WC-01	SNX24	ENST00000511211.1,ENST00000261369.4,ENST00000506996.1,ENST00000395451.4,ENST00000513881.1,ENST00000502387.1,ENST00000511545.1	chr5	122272428:122272512:122281749:122281854:122335606:122335679,	122281750	122281854	122281828	122281828	Nonsense_Mutation	C	T	p.R75*
UCS	TCGA-ND-A4WC-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100533126:100533238:100568677:100568881:100587885:100588012,	100568678	100568881	100568703	100568703	Nonsense_Mutation	C	T	p.R1616*
UCS	TCGA-ND-A4WC-01	CLINT1	ENST00000530742.1,ENST00000523094.1,ENST00000296951.5,ENST00000523908.1	chr5	157216370:157216521:157218710:157219003:157221905:157221980,157216370:157216575:157218710:157219003:157221905:157221980,	157218711	157219003	157218887	157218887	Nonsense_Mutation	C	A	p.E384*
UCS	TCGA-ND-A4WC-01	WDSUB1	ENST00000358147.4	chr2	160104882:160105023:160112706:160112886:160132056:160132149,	160112707	160112886	160112755	160112755	Nonsense_Mutation	C	A	p.E362*
UCS	TCGA-ND-A4WC-01	RIPK3	ENST00000554756.1,ENST00000216274.5	chr14	24807627:24807773:24808220:24808530:24808662:24808803,	24808221	24808530	24808484	24808484	Nonsense_Mutation	C	A	p.E70*
UCS	TCGA-ND-A4WC-01	TEX30	ENST00000376032.4,ENST00000376019.1,ENST00000376021.4	chr13	103418459:103418930:103419622:103419828:103420609:103420661,	103419623	103419828	103419691	103419691	Nonsense_Mutation	C	A	p.E105*
UCS	TCGA-ND-A4WC-01	CACUL1	ENST00000369151.3,ENST00000544392.1	chr10	120446109:120446153:120450776:120450915:120454652:120454742,	120450777	120450915	120450802	120450802	Nonsense_Mutation	C	A	p.E334*
UCS	TCGA-ND-A4WC-01	POU2F3	ENST00000543440.2,ENST00000260264.4,ENST00000533620.1	chr11	120117157:120117226:120139918:120139953:120168973:120169099,	120139919	120139953	120139927	120139927	Nonsense_Mutation	C	T	p.R38*
UCS	TCGA-ND-A4WC-01	SENP5	ENST00000419026.1,ENST00000323460.5	chr3	196630403:196630481:196650284:196650422:196654666:196654750,	196650285	196650422	196650379	196650379	Nonsense_Mutation	C	A	p.S660*
UCS	TCGA-ND-A4WC-01	COL9A1	ENST00000357250.6,ENST00000370496.3	chr6	70993439:70993523:71003869:71004266:71009745:71009878,	71003870	71004266	71004214	71004214	Nonsense_Mutation	G	A	p.R118*
UCS	TCGA-ND-A4WC-01	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20414132	20414132	Nonsense_Mutation	C	A	p.E238*
UCS	TCGA-ND-A4WC-01	TMX2	ENST00000524972.1	chr11	57505079:57505140:57506135:57506511:57506602:57506732,	57506136	57506511	57506209	57506209	Nonsense_Mutation	C	A	p.S172*
UCS	TCGA-ND-A4WC-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213414614	213414614	Nonsense_Mutation	G	T	p.E599*
UCS	TCGA-ND-A4WC-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88665027:88665120:88666198:88666356:88675341:88675459,	88666199	88666356	88666313	88666313	Nonsense_Mutation	C	T	p.R349*
UCS	TCGA-ND-A4WC-01	ZNF813	ENST00000396403.4	chr19	53987003:53987091:53989885:53990012:53993628:53993832,	53989886	53990012	53989942	53989942	Nonsense_Mutation	C	A	p.C24*
UCS	TCGA-ND-A4WC-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4,ENST00000503946.1,ENST00000507053.1	chr5	134154605:134154694:134162636:134162710:134164348:134164436,	134162637	134162710	134162645	134162645	Nonsense_Mutation	G	T	p.E996*
UCS	TCGA-ND-A4WC-01	PCDH15	ENST00000463095.1,ENST00000320301.6,ENST00000448885.1,ENST00000437009.1,ENST00000395430.1,ENST00000373965.2,ENST00000373956.3,ENST00000414778.1,ENST00000409834.1,ENST00000395445.1,ENST00000395433.1,ENST00000395432.2,ENST00000395438.1,ENST00000361849.3	chr10	55616934:55617023:55626401:55626617:55663002:55663130,	55626402	55626617	55626542	55626542	Nonsense_Mutation	C	A	p.E1200*
UCS	TCGA-ND-A4WC-01	MID1	ENST00000380779.1,ENST00000380780.1,ENST00000453318.2,ENST00000413894.1,ENST00000317552.4,ENST00000380787.1,ENST00000380782.2,ENST00000380785.1	chrX	10463623:10463731:10491131:10491227:10534927:10535643,	10491132	10491227	10491182	10491182	Nonsense_Mutation	C	A	p.E236*
UCS	TCGA-ND-A4WC-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111678216:111678328:111680024:111680217:111685055:111685181,	111680025	111680217	111680169	111680169	Nonsense_Mutation	G	A	p.R2232*
UCS	TCGA-ND-A4WC-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937070	48937070	Nonsense_Mutation	G	T	p.E280*
UCS	TCGA-ND-A4WC-01	SFXN4	ENST00000484960.1	chr10	120905801:120905865:120907286:120907372:120914573:120914635,120900767:120900831:120907286:120907372:120914573:120914635,	120907287	120907372	120907363	120907363	Nonsense_Mutation	C	A	p.E248*
UCS	TCGA-ND-A4WC-01	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49159595:49159803:49160136:49160485:49160564:49160806,	49160137	49160485	49160170	49160170	Nonsense_Mutation	C	A	p.E1514*
UCS	TCGA-ND-A4WC-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645132	67645132	Nonsense_Mutation	G	T	p.E133*
UCS	TCGA-ND-A4WC-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46120030:46120085:46121398:46122553:46135263:46135411,	46121399	46122553	46122112	46122112	Nonsense_Mutation	C	A	p.E313*
UCS	TCGA-ND-A4WC-01	BCCIP	ENST00000478798.1,ENST00000368759.5,ENST00000299130.3,ENST00000278100.6	chr10	127516126:127516207:127519130:127519220:127519988:127520106,	127519131	127519220	127519170	127519170	Nonsense_Mutation	G	T	p.E121*
UCS	TCGA-ND-A4WC-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551579	165551579	Nonsense_Mutation	C	A	p.E775*
UCS	TCGA-ND-A4WC-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551579	165551579	Nonsense_Mutation	C	A	p.E775*
UCS	TCGA-ND-A4WC-01	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000485398.1,ENST00000272427.6	chr2	72727056:72727101:72740260:72740381:72741762:72741809,	72740261	72740381	72740314	72740314	Nonsense_Mutation	C	A	p.E372*
UCS	TCGA-ND-A4WC-01	ITSN2	ENST00000361999.3	chr2	24498581:24498718:24509080:24509220:24516556:24516644,	24509081	24509220	24509172	24509172	Nonsense_Mutation	A	C	p.L591*
UCS	TCGA-ND-A4WC-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37107714:37107816:37116514:37116607,37107300:37107433:37107714:37107816:37114280:37114373,	37107715	37107816	37107798	37107798	Nonsense_Mutation	C	A	p.E495*
UCS	TCGA-ND-A4WC-01	ATG2B	ENST00000359933.4	chr14	96798641:96798747:96798837:96798992:96800024:96800210,	96798838	96798992	96798990	96798990	Nonsense_Mutation	C	A	p.E404*
UCS	TCGA-ND-A4WC-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108164111:108164204:108165653:108165786:108168013:108168109,	108165654	108165786	108165729	108165729	Nonsense_Mutation	C	T	p.R1618*
UCS	TCGA-ND-A4WC-01	SNX27	ENST00000368843.3,ENST00000458013.2	chr1	151584557:151584988:151611363:151611595:151630710:151630903,	151611364	151611595	151611416	151611416	Nonsense_Mutation	C	T	p.R122*
UCS	TCGA-ND-A4WC-01	MNS1	ENST00000260453.3	chr15	56739038:56739141:56748591:56748719:56756223:56756445,	56748592	56748719	56748713	56748713	Nonsense_Mutation	C	A	p.E78*
UCS	TCGA-ND-A4WC-01	PRCP	ENST00000393399.2,ENST00000528082.1,ENST00000532809.1,ENST00000313010.3,ENST00000529671.1,ENST00000531801.1,ENST00000533126.1,ENST00000534396.1,ENST00000527444.1	chr11	82561514:82561547:82564218:82564320:82571018:82571159,	82564219	82564320	82564263	82564263	Nonsense_Mutation	G	A	p.R123*
UCS	TCGA-ND-A4WC-01	ICA1L	ENST00000358299.2,ENST00000392237.2	chr2	203650640:203650730:203653552:203653810:203661612:203661687,	203653553	203653810	203653775	203653775	Nonsense_Mutation	C	A	p.E341*
UCS	TCGA-ND-A4WC-01	ICOSLG	ENST00000400377.3	chr21	45656749:45657100:45658330:45658371:45660686:45660723,45655154:45655445:45658330:45658371:45660686:45660723,	45658331	45658371	45658337	45658337	Nonsense_Mutation	G	A	p.R17*
UCS	TCGA-ND-A4WC-01	INTS8	ENST00000523352.1,ENST00000523731.1,ENST00000447247.1,ENST00000520526.1,ENST00000524333.1,ENST00000521155.1	chr8	95879555:95879565:95884111:95884230:95885601:95885705,	95884112	95884230	95884164	95884164	Nonsense_Mutation	C	T	p.R823*
UCS	TCGA-ND-A4WC-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671492	151671492	Nonsense_Mutation	G	T	p.E656*
UCS	TCGA-ND-A4WC-01	RFC5	ENST00000543153.1,ENST00000392542.2,ENST00000229043.3,ENST00000454402.2	chr12	118465766:118465835:118467575:118467630:118468986:118469241,	118467576	118467630	118467596	118467596	Nonsense_Mutation	C	T	p.R277*
UCS	TCGA-ND-A4WC-01	MAPRE1	ENST00000375571.5	chr20	31421522:31421668:31424439:31424647:31427540:31427662,	31424440	31424647	31424467	31424467	Nonsense_Mutation	G	T	p.G99*
UCS	TCGA-ND-A4WC-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511762	169511762	Nonsense_Mutation	C	A	p.E861*
UCS	TCGA-ND-A4WC-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000361499.3	chr6	71232215:71232289:71233669:71233824:71234045:71234302,71232215:71232289:71233669:71233824:71234633:71234894,	71233670	71233824	71233777	71233777	Nonsense_Mutation	C	A	p.S404*
UCS	TCGA-ND-A4WC-01	SEC61A1	ENST00000243253.3,ENST00000424880.2,ENST00000464451.1	chr3	127783719:127783880:127785796:127785994:127786263:127786455,	127785797	127785994	127785899	127785899	Nonsense_Mutation	C	T	p.Q294*
UCS	TCGA-ND-A4WC-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542357	187542357	Nonsense_Mutation	G	A	p.R1795*
UCS	TCGA-ND-A4WC-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123900386:123900541:123949340:123949550:123977541:123977595,	123949341	123949550	123949434	123949434	Nonsense_Mutation	C	T	p.R655*
UCS	TCGA-ND-A4WC-01	SERPINI2	ENST00000471111.1,ENST00000466903.1,ENST00000476257.1,ENST00000461846.1,ENST00000264677.4	chr3	167183422:167183461:167184842:167185073:167189375:167189627,	167184843	167185073	167185068	167185068	Nonsense_Mutation	C	A	p.E85*
UCS	TCGA-ND-A4WC-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75156775	75156775	Nonsense_Mutation	C	A	p.E632*
UCS	TCGA-ND-A4WC-01	PDE8B	ENST00000503963.1,ENST00000333194.4,ENST00000342343.4,ENST00000264917.5	chr5	76640677:76640756:76645243:76645384:76646889:76646943,	76645244	76645384	76645304	76645304	Nonsense_Mutation	G	T	p.E313*
UCS	TCGA-ND-A4WC-01	KCMF1	ENST00000409785.4	chr2	85198215:85198590:85255011:85255179:85262138:85262248,	85255012	85255179	85255047	85255047	Nonsense_Mutation	C	T	p.R18*
UCS	TCGA-ND-A4WC-01	CCDC144A	ENST00000360495.5,ENST00000360524.8,ENST00000340621.5,ENST00000443444.2,ENST00000399273.1	chr17	16610782:16610856:16612109:16612949:16614992:16615129,	16612110	16612949	16612833	16612833	Nonsense_Mutation	G	T	p.E488*
UCS	TCGA-ND-A4WC-01	CAPN9	ENST00000354537.1	chr1	230883178:230883455:230891082:230891152:230895257:230895376,	230891083	230891152	230891101	230891101	Nonsense_Mutation	G	T	p.E78*
UCS	TCGA-ND-A4WC-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117227792:117227887:117230406:117230493:117231987:117232711,	117230407	117230493	117230480	117230480	Nonsense_Mutation	G	T	p.E585*
UCS	TCGA-ND-A4WC-01	AGGF1	ENST00000312916.7	chr5	76342171:76342502:76343985:76344097:76344760:76344812,	76343986	76344097	76344055	76344055	Nonsense_Mutation	C	A	p.S424*
UCS	TCGA-ND-A4WC-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2,ENST00000431944.1	chr3	46496918:46496932:46497285:46497468:46497779:46497888,	46497286	46497468	46497452	46497452	Nonsense_Mutation	A	C	p.Y111*
UCS	TCGA-ND-A4WC-01	TVP23B	ENST00000574294.1	chr17	18692675:18692748:18694208:18694273:18700891:18700981,	18694209	18694273	18694243	18694243	Nonsense_Mutation	C	T	p.R44*
UCS	TCGA-ND-A4WC-01	TVP23B	ENST00000575261.1,ENST00000574226.1,ENST00000307767.8,ENST00000476139.1,ENST00000581733.1	chr17	18692675:18692748:18694208:18694353:18700891:18700981,	18694209	18694353	18694243	18694243	Nonsense_Mutation	C	T	p.R44*
UCS	TCGA-ND-A4WC-01	SLC6A15	ENST00000450363.3,ENST00000266682.5	chr12	85279689:85279847:85285610:85286087:85306301:85306484,	85285611	85286087	85285788	85285788	Nonsense_Mutation	C	A	p.E38*
UCS	TCGA-ND-A4WC-01	SPARC	ENST00000231061.4,ENST00000539687.1	chr5	151051133:151051255:151052689:151052777:151054172:151054232,	151052690	151052777	151052738	151052738	Nonsense_Mutation	C	A	p.E54*
UCS	TCGA-ND-A4WC-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610695	52610695	Nonsense_Mutation	G	A	p.R1153*
UCS	TCGA-ND-A4WC-01	KIAA1257	ENST00000511438.1,ENST00000515659.1,ENST00000510149.1,ENST00000265068.5	chr3	128695855:128695909:128696887:128697028:128706458:128706672,	128696888	128697028	128696954	128696954	Nonsense_Mutation	C	A	p.E248*
UCS	TCGA-ND-A4WC-01	CLEC17A	ENST00000397439.2,ENST00000547437.1,ENST00000339847.5,ENST00000551730.1,ENST00000417570.1	chr19	14705328:14705361:14705443:14705494:14705570:14705612,	14705444	14705494	14705455	14705455	Nonsense_Mutation	G	T	p.E108*
UCS	TCGA-ND-A4WC-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476392	32476392	Nonsense_Mutation	G	A	p.R181*
UCS	TCGA-ND-A4WC-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450260	55450260	Nonsense_Mutation	C	A	p.E671*
UCS	TCGA-NF-A4WX-01	HFE	ENST00000483782.1	chr6	26087666:26087744:26091068:26091817:26092912:26093188,	26091069	26091817	26091203	26091203	Nonsense_Mutation	C	T	p.R71*
UCS	TCGA-NF-A4WX-01	HFE	ENST00000317896.7	chr6	26087666:26087744:26091068:26091332:26091541:26091817,26087666:26087744:26091068:26091332:26092912:26093188,	26091069	26091332	26091203	26091203	Nonsense_Mutation	C	T	p.R71*
UCS	TCGA-ND-A4WF-01	ADAMTSL1	ENST00000380566.4,ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18574027:18574264:18622240:18622367:18635940:18636015,	18622241	18622367	18622331	18622331	Nonsense_Mutation	C	T	p.R189*
UCS	TCGA-N6-A4VF-01	GRIA3	ENST00000371251.1,ENST00000264357.5	chrX	122598715:122598963:122599524:122599639:122613913:122614028,122598715:122598963:122599524:122599639:122616649:122616897,	122599525	122599639	122599593	122599593	Nonsense_Mutation	G	A	p.W798*
UCS	TCGA-N9-A4Q8-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573982	7573982	Nonsense_Mutation	C	A	p.E349*
UCS	TCGA-N6-A4V9-01	CD300A	ENST00000392625.3,ENST00000577511.1,ENST00000582319.1,ENST00000310828.5,ENST00000360141.3	chr17	72470670:72470824:72473574:72473669:72477427:72477465,	72473575	72473669	72473654	72473654	Nonsense_Mutation	C	T	p.Q205*
UCS	TCGA-N9-A4PZ-01	ADIPOR1	ENST00000436244.1,ENST00000426229.1,ENST00000340990.5,ENST00000417068.1	chr1	202914110:202914297:202915566:202915738:202917431:202917548,	202915567	202915738	202915580	202915580	Nonsense_Mutation	C	T	p.W139*
UCS	TCGA-NG-A4VW-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000393824.3	chr7	101740643:101740781:101747615:101747739:101754977:101755006,	101747616	101747739	101747648	101747648	Nonsense_Mutation	C	T	p.R158*
UCS	TCGA-N8-A4PN-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745259	135745259	Nonsense_Mutation	G	A	p.Q395*
UCS	TCGA-N5-A4R8-01	NRAP	ENST00000359988.3,ENST00000369358.4	chr10	115401123:115401231:115402692:115402797:115405583:115405700,	115402693	115402797	115402734	115402734	Nonsense_Mutation	G	A	p.Q392*
UCS	TCGA-N5-A4R8-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4737296	4737296	Nonsense_Mutation	C	A	p.G258*
UCS	TCGA-N8-A4PI-01	POLQ	ENST00000264233.5	chr3	121258279:121258436:121260195:121260326:121263573:121263753,	121260196	121260326	121260219	121260219	Nonsense_Mutation	T	A	p.K151*
UCS	TCGA-N8-A4PI-01	CYP7B1	ENST00000310193.3	chr8	65517238:65517414:65527582:65527789:65528247:65528371,	65527583	65527789	65527731	65527731	Nonsense_Mutation	C	T	p.W303*
UCS	TCGA-N8-A4PI-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645939	54645939	Nonsense_Mutation	A	T	p.Y70*
UCS	TCGA-QN-A5NN-01	ARL15	ENST00000505383.1,ENST00000507646.2,ENST00000505630.1,ENST00000504924.1	chr5	53450409:53450469:53467613:53467758:53606124:53606245,53450409:53450469:53467613:53467758:53606261:53606403,	53467614	53467758	53467719	53467719	Nonsense_Mutation	G	A	p.R30*
UCS	TCGA-NA-A4R1-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Nonsense_Mutation	C	T	p.R233*
UCS	TCGA-NA-A4R1-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953760	48953760	Nonsense_Mutation	C	T	p.R455*
UCS	TCGA-NA-A4R1-01	METTL14	ENST00000506780.1,ENST00000502564.1,ENST00000388822.5	chr4	119618336:119618478:119621704:119621797:119625089:119625206,	119621705	119621797	119621741	119621741	Nonsense_Mutation	C	T	p.R228*
UCS	TCGA-NA-A4R1-01	SLC25A27	ENST00000411689.2	chr6	46620721:46621035:46623579:46623771:46626698:46626783,	46623580	46623771	46623609	46623609	Nonsense_Mutation	C	T	p.R46*
UCS	TCGA-N9-A4Q7-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450933	85450933	Nonsense_Mutation	C	T	p.R788*
UCS	TCGA-N9-A4Q7-01	TASP1	ENST00000337743.4,ENST00000465381.1	chr20	13415690:13415801:13463873:13463984:13509079:13509158,	13463874	13463984	13463939	13463939	Nonsense_Mutation	G	C	p.S307*
UCS	TCGA-N9-A4Q7-01	GNB5	ENST00000396335.4,ENST00000559348.1,ENST00000557936.1,ENST00000358784.7,ENST00000261837.7	chr15	52414405:52414965:52416669:52416836:52418144:52418241,	52416670	52416836	52416726	52416726	Nonsense_Mutation	G	A	p.R374*
UCS	TCGA-N9-A4Q7-01	F9	ENST00000394090.2	chrX	138623245:138623348:138630521:138630650:138633220:138633406,138619520:138619545:138630521:138630650:138633220:138633406,	138630522	138630650	138630629	138630629	Nonsense_Mutation	C	T	p.Q167*
UCS	TCGA-N6-A4VG-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000505180.1,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1,ENST00000503707.2,ENST00000502524.1,ENST00000503046.1	chr5	49963904:49963959:50045984:50046022:50055476:50055524,	50045985	50046022	50045994	50045994	Nonsense_Mutation	C	A	p.Y52*
UCS	TCGA-N7-A4Y0-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98232094:98232213:98238315:98238441:98239040:98239139,	98238316	98238441	98238411	98238411	Nonsense_Mutation	C	A	p.G479*
UCS	TCGA-N7-A4Y0-01	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000450235.1,ENST00000402746.1	chr7	1937835:1938026:1976322:1976533:1997263:1997354,	1976323	1976533	1976422	1976422	Nonsense_Mutation	G	A	p.R570*
UCS	TCGA-N7-A4Y0-01	UBE2G1	ENST00000572484.1,ENST00000396981.2,ENST00000571953.1	chr17	4192524:4192703:4200011:4200109:4210315:4210418,	4200012	4200109	4200057	4200057	Nonsense_Mutation	G	A	p.R68*
UCS	TCGA-NA-A4QV-01	SIPA1L3	ENST00000222345.6	chr19	38631823:38632075:38633212:38633350:38643479:38643607,	38633213	38633350	38633333	38633333	Nonsense_Mutation	C	G	p.Y1172*
UCS	TCGA-N5-A4RD-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677691	88677691	Nonsense_Mutation	C	T	p.R408*
UCS	TCGA-N8-A4PP-01	SORCS1	ENST00000344440.6,ENST00000369698.1,ENST00000452214.1,ENST00000263054.6	chr10	108357108:108357208:108366923:108367055:108371668:108371745,	108366924	108367055	108366950	108366950	Nonsense_Mutation	T	A	p.K1047*
UCS	TCGA-N9-A4Q4-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000526832.1,ENST00000356994.2	chr8	144877594:144877700:144885552:144885741:144885816:144886110,	144885553	144885741	144885555	144885555	Nonsense_Mutation	C	A	p.E1201*
UCS	TCGA-N9-A4Q4-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745373	135745373	Nonsense_Mutation	G	A	p.R357*
UCS	TCGA-N9-A4Q8-01	PCDH7	ENST00000543491.1	chr4	30726062:30726218:30921774:30921991:31144094:31144353,	30921775	30921991	30921970	30921970	Nonsense_Mutation	G	T	p.E1124*
UCS	TCGA-ND-A4WC-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814274	214814274	Nonsense_Mutation	G	T	p.E865*
UCS	TCGA-ND-A4WC-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897168	36897168	Nonsense_Mutation	C	A	p.E1305*
UCS	TCGA-ND-A4WC-01	ITGB8	ENST00000222573.4,ENST00000537992.1,ENST00000478974.1	chr7	20420288:20420454:20421349:20421508:20431025:20431121,	20421350	20421508	20421365	20421365	Nonsense_Mutation	C	T	p.R273*
UCS	TCGA-ND-A4WC-01	MNS1	ENST00000260453.3	chr15	56739038:56739141:56748591:56748719:56756223:56756445,	56748592	56748719	56748695	56748695	Nonsense_Mutation	C	A	p.E84*
UCS	TCGA-ND-A4WC-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450260	55450260	Nonsense_Mutation	C	A	p.E643*
UVM	TCGA-VD-AA8N-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507165	74507165	Nonsense_Mutation	G	A	p.R484X
UVM	TCGA-YZ-A984-01	HERC2	ENST00000261609.7,ENST00000567869.1	chr15	28441360:28441500:28441606:28441715:28443523:28443649,	28441607	28441715	28441638	28441638	Nonsense_Mutation	C	A	p.E2697X
UVM	TCGA-V4-A9EU-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437840	52437840	Nonsense_Mutation	G	A	p.Q441X
UVM	TCGA-V4-A9EM-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103828	47103828	Nonsense_Mutation	G	A	p.R2040X
UVM	TCGA-V4-A9EM-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911240	29911240	Nonsense_Mutation	T	A	p.L180X
UVM	TCGA-VD-A8KD-01	CPVL	ENST00000432534.1	chr7	29070210:29070375:29103676:29103850:29105638:29105737,29070210:29070375:29103676:29103850:29111388:29111461,	29103677	29103850	29103844	29103844	Nonsense_Mutation	C	A	p.E324X
UVM	TCGA-VD-A8KH-01	SKA3	ENST00000465471.1	chr13	21746477:21746643:21746758:21746820:21750513:21750612,21746477:21746643:21746758:21746820:21750486:21750690,	21746759	21746820	21746793	21746793	Nonsense_Mutation	A	T	p.L44X
UVM	TCGA-YZ-A985-01	CDC27	ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1	chr17	45249282:45249430:45258927:45259003:45266511:45266542,	45258928	45259003	45258967	45258967	Nonsense_Mutation	G	A	p.R22X
UVM	TCGA-YZ-A985-01	SKOR1	ENST00000554240.1	chr15	68115894:68115998:68118273:68120482:68121516:68121607,	68118274	68120482	68118635	68118635	Nonsense_Mutation	C	T	p.R343X
UVM	TCGA-YZ-A985-01	DCAF12	ENST00000361264.4	chr9	34089409:34089588:34093283:34093446:34096713:34096779,	34093284	34093446	34093293	34093293	Nonsense_Mutation	G	A	p.R339X
UVM	TCGA-YZ-A985-01	LRP2BP	ENST00000510776.1,ENST00000362004.3,ENST00000328559.7,ENST00000505916.1	chr4	186295288:186295394:186295472:186295615:186296766:186296880,	186295473	186295615	186295495	186295495	Nonsense_Mutation	G	A	p.R151X
UVM	TCGA-WC-A88A-01	PPARA	ENST00000407236.1,ENST00000396000.2,ENST00000402126.1,ENST00000262735.5	chr22	46614159:46614298:46615708:46615911:46627688:46628136,	46615709	46615911	46615723	46615723	Nonsense_Mutation	C	T	p.R175X
UVM	TCGA-WC-A88A-01	RHPN2	ENST00000400226.4,ENST00000544458.2,ENST00000588388.1,ENST00000254260.3	chr19	33486931:33487126:33490491:33490611:33493152:33493309,	33490492	33490611	33490585	33490585	Nonsense_Mutation	G	A	p.Q378X
UVM	TCGA-V4-A9F8-01	NDUFAF6	ENST00000520757.1,ENST00000286687.4	chr8	96060693:96060786:96064401:96064458:96070036:96070164,96060693:96060786:96064401:96064458:96087860:96087980,	96064402	96064458	96064453	96064453	Nonsense_Mutation	C	T	p.Q290X
UVM	TCGA-VD-A8KG-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000487065.1,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136139934:136140005:136141251:136141455:136141609:136141699,	136141252	136141455	136141361	136141361	Nonsense_Mutation	A	C	p.L643X
UVM	TCGA-V4-A9F5-01	ARHGDIA	ENST00000578351.1,ENST00000580033.1	chr17	79826931:79826951:79827048:79827112:79827417:79827501,	79827049	79827112	79827106	79827106	Nonsense_Mutation	G	A	p.R120X
UVM	TCGA-WC-AA9A-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911240	29911240	Nonsense_Mutation	T	A	p.L180X
UVM	TCGA-V4-A9F7-01	HHEX	ENST00000282728.5,ENST00000492654.2,ENST00000472590.2	chr10	94452124:94452303:94452458:94452509:94454303:94454545,	94452459	94452509	94452507	94452507	Nonsense_Mutation	C	T	p.Q197X
UVM	TCGA-V4-A9F7-01	ZC3H7A	ENST00000571405.1,ENST00000575984.1,ENST00000355758.4,ENST00000396516.2	chr16	11844450:11845362:11846524:11846688:11850092:11850226,	11846525	11846688	11846640	11846640	Nonsense_Mutation	G	A	p.Q871X
UVM	TCGA-VD-AA8R-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45247282:45247408:45249282:45249430:45258927:45258971,	45249283	45249430	45249360	45249360	Nonsense_Mutation	A	T	p.Y58X
UVM	TCGA-V4-A9EL-01	EWSR1	ENST00000397938.2,ENST00000333395.6,ENST00000331029.7,ENST00000437155.2,ENST00000483415.1,ENST00000406548.1,ENST00000332050.6	chr22	29669729:29669853:29674018:29674205:29678378:29678413,	29674019	29674205	29674050	29674050	Nonsense_Mutation	C	G	p.Y92X
UVM	TCGA-VD-A8KE-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659372	43659372	Nonsense_Mutation	C	T	p.R347X
UVM	TCGA-VD-A8KE-01	BMS1	ENST00000374518.5	chr10	43317509:43317632:43318565:43318713:43319056:43319232,	43318566	43318713	43318659	43318659	Nonsense_Mutation	C	T	p.R1076X
UVM	TCGA-VD-AA8O-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911240	29911240	Nonsense_Mutation	T	A	p.L180X
UVM	TCGA-VD-AA8N-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507165	74507165	Nonsense_Mutation	G	A	p.R484*
UVM	TCGA-RZ-AB0B-01	GMEB2	ENST00000370077.1,ENST00000266068.1	chr20	62234317:62234445:62236095:62236193:62250619:62250807,	62236096	62236193	62236098	62236098	Nonsense_Mutation	A	T	p.L76*
UVM	TCGA-VD-A8KH-01	SKA3	ENST00000465471.1	chr13	21746477:21746643:21746758:21746820:21750513:21750612,21746477:21746643:21746758:21746820:21750486:21750690,	21746759	21746820	21746793	21746793	Nonsense_Mutation	A	T	p.L44*
UVM	TCGA-WC-A88A-01	PPARA	ENST00000407236.1,ENST00000396000.2,ENST00000402126.1,ENST00000262735.5	chr22	46614159:46614298:46615708:46615911:46627688:46628136,	46615709	46615911	46615723	46615723	Nonsense_Mutation	C	T	p.R175*
UVM	TCGA-V4-A9F7-01	ZC3H7A	ENST00000571405.1,ENST00000575984.1,ENST00000355758.4,ENST00000396516.2	chr16	11844450:11845362:11846524:11846688:11850092:11850226,	11846525	11846688	11846640	11846640	Nonsense_Mutation	G	A	p.Q871*
UVM	TCGA-V4-A9F7-01	HHEX	ENST00000282728.5,ENST00000492654.2,ENST00000472590.2	chr10	94452124:94452303:94452458:94452509:94454303:94454545,	94452459	94452509	94452507	94452507	Nonsense_Mutation	C	T	p.Q197*
UVM	TCGA-V4-A9F8-01	NDUFAF6	ENST00000520757.1,ENST00000286687.4	chr8	96060693:96060786:96064401:96064458:96070036:96070164,96060693:96060786:96064401:96064458:96087860:96087980,	96064402	96064458	96064453	96064453	Nonsense_Mutation	C	T	p.Q198*
UVM	TCGA-V4-A9EM-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103828	47103828	Nonsense_Mutation	G	A	p.R2040*
UVM	TCGA-VD-A8KD-01	CPVL	ENST00000432534.1	chr7	29070210:29070375:29103676:29103850:29105638:29105737,29070210:29070375:29103676:29103850:29111388:29111461,	29103677	29103850	29103844	29103844	Nonsense_Mutation	C	A	p.E324*
UVM	TCGA-YZ-A984-01	HERC2	ENST00000261609.7,ENST00000567869.1	chr15	28441360:28441500:28441606:28441715:28443523:28443649,	28441607	28441715	28441638	28441638	Nonsense_Mutation	C	A	p.E2697*
UVM	TCGA-WC-A882-01	ZBTB11	ENST00000312938.4	chr3	101374947:101375092:101378626:101378872:101383381:101383558,	101378627	101378872	101378836	101378836	Nonsense_Mutation	G	A	p.R613*
UVM	TCGA-WC-A882-01	SHF	ENST00000558294.1	chr15	45460031:45460331:45464080:45464276:45467416:45467467,	45464081	45464276	45464122	45464122	Nonsense_Mutation	G	A	p.Q413*
UVM	TCGA-V4-A9EL-01	EWSR1	ENST00000397938.2,ENST00000333395.6,ENST00000331029.7,ENST00000437155.2,ENST00000483415.1,ENST00000406548.1,ENST00000332050.6	chr22	29669729:29669853:29674018:29674205:29678378:29678413,	29674019	29674205	29674050	29674050	Nonsense_Mutation	C	G	p.Y86*
UVM	TCGA-VD-A8KG-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000487065.1,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136139934:136140005:136141251:136141455:136141609:136141699,	136141252	136141455	136141361	136141361	Nonsense_Mutation	A	C	p.L643*
UVM	TCGA-V4-A9F5-01	ARHGDIA	ENST00000578351.1,ENST00000580033.1	chr17	79826931:79826951:79827048:79827112:79827417:79827501,	79827049	79827112	79827106	79827106	Nonsense_Mutation	G	A	p.R120*
UVM	TCGA-V4-A9EV-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000440067.1,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102667895:102668005:102669046:102669195:102669797:102669865,	102669047	102669195	102669190	102669190	Nonsense_Mutation	C	T	p.W25*
UVM	TCGA-V4-A9EU-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437840	52437840	Nonsense_Mutation	G	A	p.Q441*
UVM	TCGA-YZ-A985-01	LRP2BP	ENST00000510776.1,ENST00000362004.3,ENST00000328559.7,ENST00000505916.1	chr4	186295288:186295394:186295472:186295615:186296766:186296880,	186295473	186295615	186295495	186295495	Nonsense_Mutation	G	A	p.R153*
UVM	TCGA-YZ-A985-01	DCAF12	ENST00000361264.4	chr9	34089409:34089588:34093283:34093446:34096713:34096779,	34093284	34093446	34093293	34093293	Nonsense_Mutation	G	A	p.R339*
UVM	TCGA-YZ-A985-01	CDC27	ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1	chr17	45249282:45249430:45258927:45259003:45266511:45266542,	45258928	45259003	45258967	45258967	Nonsense_Mutation	G	A	p.R22*
UVM	TCGA-YZ-A985-01	SKOR1	ENST00000554240.1	chr15	68115894:68115998:68118273:68120482:68121516:68121607,	68118274	68120482	68118635	68118635	Nonsense_Mutation	C	T	p.R157*
ACC	TCGA-PK-A5HB-01	AGRN	ENST00000379370.2	chr1	978917:979112:979202:979403:979488:979637,	979203	979403	979279	979279	Frame_Shift_Del	C	-	p.H625fs
ACC	TCGA-PK-A5HB-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
ACC	TCGA-PK-A5HB-01	LRRC42	ENST00000319223.4,ENST00000371370.3,ENST00000444987.1	chr1	54418011:54418145:54423821:54423953:54426028:54426141,	54423822	54423953	54423901	54423902	Frame_Shift_Ins	-	T	p.L185fs
ACC	TCGA-PK-A5HB-01	UBAP2L	ENST00000271877.7,ENST00000428931.1,ENST00000343815.6,ENST00000361546.2	chr1	154223516:154223794:154223956:154224129:154226375:154226565,	154223957	154224129	154224069	154224069	Frame_Shift_Del	C	-	p.T535fs
ACC	TCGA-PK-A5HB-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898610	159898610	Frame_Shift_Del	C	-	p.P857fs
ACC	TCGA-PK-A5HB-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073232	197073232	Frame_Shift_Del	T	-	p.I1717fs
ACC	TCGA-PK-A5HB-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
ACC	TCGA-PK-A5HB-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44041615:44041728:44047053:44047239:44049935:44050074,	44047054	44047239	44047175	44047175	Frame_Shift_Del	G	-	p.H510fs
ACC	TCGA-PK-A5HB-01	LRPPRC	ENST00000260665.7	chr2	44139570:44139697:44145163:44145272:44145394:44145537,	44145164	44145272	44145165	44145165	Frame_Shift_Del	T	-	p.G1050fs
ACC	TCGA-PK-A5HB-01	SCRN3	ENST00000490927.1	chr2	175260472:175260545:175264649:175264831:175265717:175265782,	175264650	175264831	175264719	175264720	Frame_Shift_Ins	-	G	p.W77fs
ACC	TCGA-PK-A5HB-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195511828	195511828	Frame_Shift_Del	G	-	p.P2208fs
ACC	TCGA-PK-A5HB-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336953	56336954	Frame_Shift_Ins	-	A	p.L123fs
ACC	TCGA-PK-A5HB-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43615949:43616167:43619133:43619221:43624133:43624222,	43619134	43619221	43619202	43619203	Frame_Shift_Ins	-	A	p.G223fs
ACC	TCGA-PK-A5HB-01	GALNT10	ENST00000519544.1,ENST00000425427.2,ENST00000297107.6,ENST00000520647.1	chr5	153709131:153709298:153760007:153760191:153765872:153765990,153755876:153756022:153760007:153760191:153765872:153765990,	153760008	153760191	153760166	153760166	Frame_Shift_Del	A	-	p.Q304fs
ACC	TCGA-PK-A5HB-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173383	154173383	Frame_Shift_Del	C	-	p.V220fs
ACC	TCGA-PK-A5HB-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173383	154173383	Frame_Shift_Del	C	-	p.V220fs
ACC	TCGA-PK-A5HB-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
ACC	TCGA-PK-A5HB-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
ACC	TCGA-PK-A5HB-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
ACC	TCGA-PK-A5HB-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635951	32635951	Frame_Shift_Del	T	-	p.E638fs
ACC	TCGA-PK-A5HB-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.C263X
ACC	TCGA-PK-A5HB-01	BCL11B	ENST00000357195.3	chr14	99640297:99642532:99697681:99697894:99723807:99724173,	99697682	99697894	99697775	99697775	Frame_Shift_Del	G	-	p.L183fs
ACC	TCGA-PK-A5HB-01	RORA	ENST00000309157.4,ENST00000261523.5,ENST00000335670.6,ENST00000449337.2	chr15	60797804:60797828:60803424:60803820:60806814:60806956,	60803425	60803820	60803784	60803785	Frame_Shift_Del	TC	-	p.187_187del
ACC	TCGA-PK-A5HB-01	VWA3A	ENST00000299840.6,ENST00000566668.1,ENST00000389397.4,ENST00000389398.5	chr16	22134405:22134486:22134933:22135028:22137498:22137618,	22134934	22135028	22135022	22135022	Frame_Shift_Del	A	-	p.E509fs
ACC	TCGA-PK-A5HB-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338131	19338131	Frame_Shift_Del	C	-	p.W567fs
ACC	TCGA-PK-A5HB-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838298	42838298	Frame_Shift_Del	G	-	p.W164fs
ACC	TCGA-PK-A5HB-01	FCGRT	ENST00000596975.1	chr19	50016660:50016730:50017138:50017390:50017467:50017541,50016453:50016500:50017138:50017390:50017467:50017566,50016660:50016730:50017138:50017390:50027763:50027825,	50017139	50017390	50017380	50017380	Frame_Shift_Del	G	-	p.L105fs
ACC	TCGA-PK-A5HB-01	FCGRT	ENST00000598936.1	chr19	50016660:50016730:50017138:50017743:50024951:50025070,	50017139	50017743	50017380	50017380	Frame_Shift_Del	G	-	p.L105fs
ACC	TCGA-PK-A5HB-01	SNRPE	ENST00000469451.1	chr1	203831337:203831350:203832790:203832853:203834168:203834247,203830977:203831083:203832790:203832853:203834168:203834247,	203832791	203832853	203832839	203832839	Frame_Shift_Del	G	-	p.I43fs
ACC	TCGA-PK-A5HB-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763924	74763924	Frame_Shift_Del	C	-	p.G275fs
ACC	TCGA-PK-A5HB-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604680	160604680	Frame_Shift_Del	T	-	p.T293fs
ACC	TCGA-PK-A5HB-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
ACC	TCGA-PK-A5HB-01	SLC16A14	ENST00000295190.4	chr2	230899697:230902247:230910460:230911438:230914476:230914620,	230910461	230911438	230911202	230911203	Frame_Shift_Del	GA	-	p.214_214del
ACC	TCGA-PK-A5HB-01	TTC1	ENST00000231238.5	chr5	159436119:159436200:159437506:159437865:159462146:159462207,	159437507	159437865	159437837	159437837	Frame_Shift_Del	A	-	p.E101fs
ACC	TCGA-PK-A5HB-01	TWISTNB	ENST00000222567.5	chr7	19738187:19738350:19739694:19739903:19744401:19744543,	19739695	19739903	19739713	19739713	Frame_Shift_Del	C	-	p.G196fs
ACC	TCGA-PK-A5HB-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560464	75560464	Frame_Shift_Del	C	-	p.S1698fs
ACC	TCGA-PK-A5HB-01	MYH11	ENST00000576790.2,ENST00000452625.2	chr16	15797847:15797980:15802659:15802698:15808765:15808824,	15802660	15802698	15802687	15802687	Frame_Shift_Del	G	-	p.P1940fs
ACC	TCGA-PK-A5HB-01	SYDE1	ENST00000342784.2,ENST00000600440.1	chr19	15220514:15221159:15221331:15221546:15222123:15222250,	15221332	15221546	15221496	15221496	Frame_Shift_Del	C	-	p.V413fs
ACC	TCGA-PK-A5HB-01	DPYD	ENST00000370192.3	chr1	98157276:98157354:98164906:98165103:98187065:98187210,	98164907	98165103	98165042	98165043	Frame_Shift_Ins	-	T	p.M182fs
ACC	TCGA-PK-A5HB-01	AKNAD1	ENST00000369995.3,ENST00000369994.1,ENST00000461774.1,ENST00000370001.3,ENST00000603450.1,ENST00000357393.4,ENST00000474186.1	chr1	109366187:109366310:109369826:109369924:109373180:109373272,	109369827	109369924	109369885	109369886	Frame_Shift_Ins	-	T	p.N626fs
ACC	TCGA-PK-A5HB-01	COPS8	ENST00000392008.2,ENST00000354371.2	chr2	237998504:237998637:238002732:238002840:238004464:238004527,	238002733	238002840	238002796	238002797	Frame_Shift_Ins	-	T	p.D132fs
ACC	TCGA-PK-A5HB-01	COPS8	ENST00000470452.1	chr2	237998504:237998637:238002305:238002840:238004464:238004527,	238002306	238002840	238002796	238002797	Frame_Shift_Ins	-	T	p.D132fs
ACC	TCGA-PK-A5HB-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437564	52437565	Frame_Shift_Ins	-	A	p.G533fs
ACC	TCGA-OR-A5LB-01	ACBD3	ENST00000366812.5	chr1	226349231:226349390:226352489:226352630:226353559:226353701,	226352490	226352630	226352491	226352491	Frame_Shift_Del	T	-	p.R190fs
ACC	TCGA-OR-A5LB-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000380265.5,ENST00000506714.1	chr4	89306650:89306727:89311803:89312031:89314639:89314734,	89311804	89312031	89311864	89311865	Frame_Shift_Ins	-	C	p.F166fs
ACC	TCGA-OR-A5LB-01	OSMR	ENST00000274276.3	chr5	38921719:38921896:38923251:38923356:38924523:38924697,	38923252	38923356	38923329	38923329	Frame_Shift_Del	A	-	p.E614fs
ACC	TCGA-OR-A5LB-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086413	144086414	Frame_Shift_Ins	-	A	p.S237fs
ACC	TCGA-OR-A5LB-01	ICA1	ENST00000407906.1,ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000317367.5,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8196745:8196844:8198156:8198282:8257934:8258089,	8198157	8198282	8198250	8198251	Frame_Shift_Ins	-	T	p.N204fs
ACC	TCGA-OR-A5LB-01	GOLGA2	ENST00000609374.1,ENST00000421699.2	chr9	131022404:131022468:131022743:131023081:131023450:131023538,	131022744	131023081	131022875	131022875	Frame_Shift_Del	C	-	p.E516fs
ACC	TCGA-OR-A5LB-01	TRIM21	ENST00000254436.7	chr11	4408197:4408220:4409529:4409760:4410883:4410979,	4409530	4409760	4409704	4409705	Frame_Shift_Ins	-	T	p.N187fs
ACC	TCGA-OR-A5LB-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645832	54645832	Frame_Shift_Del	T	-	p.K106fs
ACC	TCGA-OR-A5LB-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182525	59182526	Frame_Shift_Del	TC	-	p.678_679del
ACC	TCGA-OR-A5LB-01	BCL7C	ENST00000572628.1,ENST00000380317.4,ENST00000215115.4	chr16	30904035:30904068:30904160:30904269:30904532:30904611,	30904161	30904269	30904237	30904238	Frame_Shift_Del	TC	-	p.68_69del
ACC	TCGA-OR-A5LB-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470593	44470593	Frame_Shift_Del	T	-	p.N150fs
ACC	TCGA-OR-A5LB-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996512	45996513	Frame_Shift_Ins	-	G	p.P313fs
ACC	TCGA-OR-A5LB-01	MIB2	ENST00000506488.1,ENST00000378710.3,ENST00000378712.1,ENST00000505820.2,ENST00000357210.4,ENST00000378708.1,ENST00000464570.1,ENST00000360522.4,ENST00000520777.1,ENST00000487053.1,ENST00000489635.1,ENST00000479659.1,ENST00000504599.1,ENST00000511502.1,ENST00000473511.1,ENST00000514234.1,ENST00000355826.5,ENST00000518681.1	chr1	1563652:1563779:1563868:1564102:1564512:1564543,	1563869	1564102	1564067	1564067	Frame_Shift_Del	G	-	p.A837fs
ACC	TCGA-OR-A5LB-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291458	140291459	Frame_Shift_Del	AA	-	p.616_616del
ACC	TCGA-OR-A5LB-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000355730.3,ENST00000457718.1	chr7	47384521:47384636:47385784:47385954:47407961:47408799,	47385785	47385954	47385878	47385878	Frame_Shift_Del	C	-	p.Q787fs
ACC	TCGA-OR-A5LB-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76112249	76112249	Frame_Shift_Del	A	-	p.P231fs
ACC	TCGA-OR-A5LB-01	ST18	ENST00000521824.1,ENST00000276480.7,ENST00000522251.1,ENST00000521582.1	chr8	53055489:53055605:53062291:53062537:53071457:53071669,	53062292	53062537	53062482	53062482	Frame_Shift_Del	T	-	p.N621fs
ACC	TCGA-OR-A5LB-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736371	Frame_Shift_Del	C	-	p.Q1875fs
ACC	TCGA-OR-A5LB-01	MYH11	ENST00000576790.2,ENST00000452625.2	chr16	15797847:15797980:15802659:15802698:15808765:15808824,	15802660	15802698	15802686	15802687	Frame_Shift_Ins	-	G	p.P1940fs
ACC	TCGA-OR-A5J5-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
ACC	TCGA-OR-A5J5-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.S469fs
ACC	TCGA-OR-A5J5-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.F754fs
ACC	TCGA-OR-A5J5-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672365	151672365	Frame_Shift_Del	C	-	p.E946fs
ACC	TCGA-OR-A5J5-01	PSMC1	ENST00000543772.2,ENST00000261303.8	chr14	90729661:90729786:90730005:90730191:90730384:90730444,	90730006	90730191	90730133	90730137	Frame_Shift_Del	TTTCA	-	p.136_137del
ACC	TCGA-OR-A5J5-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
ACC	TCGA-OR-A5J5-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
ACC	TCGA-OR-A5J5-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
ACC	TCGA-OR-A5J5-01	PRSS8	ENST00000317508.6	chr16	31144199:31144274:31144546:31144709:31146474:31146492,	31144547	31144709	31144689	31144689	Frame_Shift_Del	G	-	p.Q42fs
ACC	TCGA-OR-A5J5-01	SHC2	ENST00000590170.1	chr19	418922:419056:422145:422379:430683:430747,	422146	422379	422360	422360	Frame_Shift_Del	G	-	p.P469fs
ACC	TCGA-OR-A5J5-01	EML2	ENST00000245925.3,ENST00000586195.1,ENST00000587152.1,ENST00000536630.1,ENST00000399594.3,ENST00000586902.1,ENST00000588000.1,ENST00000589876.1,ENST00000590580.1,ENST00000588308.1	chr19	46124811:46124895:46129962:46130097:46133208:46133290,46127977:46128076:46129962:46130097:46136118:46136229,46127977:46128076:46129962:46130097:46133208:46133290,	46129963	46130097	46129994	46129994	Frame_Shift_Del	C	-	p.G438fs
ACC	TCGA-OR-A5J5-01	TTC28	ENST00000469670.1,ENST00000431039.1,ENST00000397906.2	chr22	28388599:28388651:28389274:28389506:28392122:28392227,	28389275	28389506	28389367	28389367	Frame_Shift_Del	G	-	p.P1795fs
ACC	TCGA-OR-A5J5-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661638	40661638	Frame_Shift_Del	A	-	p.S468X
ACC	TCGA-OR-A5J5-01	AGFG1	ENST00000409315.1,ENST00000409171.1,ENST00000373671.3,ENST00000409979.2,ENST00000310078.8	chr2	228356262:228356356:228384663:228384779:228388478:228388641,	228384664	228384779	228384741	228384744	Frame_Shift_Del	GAAA	-	p.113_114del
ACC	TCGA-OR-A5J5-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336954	Frame_Shift_Del	A	-	p.L123fs
ACC	TCGA-OR-A5J5-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31323953	31323960	Frame_Shift_Del	CCAGCTTG	-	p.202_204del
ACC	TCGA-OR-A5J5-01	HLA-B	ENST00000434333.1,ENST00000412585.2	chr6	31323283:31323369:31323943:31324219:31324464:31324569,	31323944	31324219	31323953	31323960	Frame_Shift_Del	CCAGCTTG	-	p.202_204del
ACC	TCGA-OR-A5J5-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.H509fs
ACC	TCGA-OR-A5J5-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.H509fs
ACC	TCGA-OR-A5J5-01	MIS18BP1	ENST00000454990.1	chr14	45711963:45712077:45715945:45716580:45722237:45722380,	45715946	45716580	45716019	45716019	Frame_Shift_Del	T	-	p.L158fs
ACC	TCGA-OR-A5J5-01	ALOX12B	ENST00000319144.4,ENST00000583276.1	chr17	7980307:7980511:7982713:7982857:7983086:7983259,	7982714	7982857	7982767	7982767	Frame_Shift_Del	G	-	p.L340fs
ACC	TCGA-OR-A5J5-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532525	3532525	Frame_Shift_Del	G	-	p.S373fs
ACC	TCGA-OR-A5J5-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
ACC	TCGA-OR-A5J5-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
ACC	TCGA-OR-A5J5-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982957	40982957	Frame_Shift_Del	C	-	p.Q25fs
ACC	TCGA-OR-A5JF-01	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42262853	42262854	Frame_Shift_Ins	-	T	p.S36fs
ACC	TCGA-OR-A5JI-01	EML6	ENST00000356458.6	chr2	55071183:55071385:55074622:55074760:55077098:55077355,	55074623	55074760	55074739	55074740	Frame_Shift_Ins	-	T	p.S389fs
ACC	TCGA-OR-A5KB-01	SLAMF9	ENST00000368093.3	chr1	159921281:159921656:159922051:159922324:159923098:159923439,	159922052	159922324	159922196	159922196	Frame_Shift_Del	C	-	p.D174fs
ACC	TCGA-OR-A5KB-01	RGSL1	ENST00000542961.1,ENST00000436031.1,ENST00000443996.2,ENST00000415960.2,ENST00000294854.8	chr1	182499378:182499496:182499924:182500045:182501796:182501926,	182499925	182500045	182500036	182500036	Frame_Shift_Del	G	-	p.Q785fs
ACC	TCGA-OR-A5KB-01	FAM49A	ENST00000406434.1,ENST00000355549.2,ENST00000381323.3	chr2	16742723:16742801:16743272:16743409:16745256:16745362,	16743273	16743409	16743378	16743378	Frame_Shift_Del	C	-	p.T111fs
ACC	TCGA-OR-A5KB-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717464	73717464	Frame_Shift_Del	G	-	p.R2792fs
ACC	TCGA-OR-A5KB-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509533	102509534	Frame_Shift_Ins	-	A	p.G25fs
ACC	TCGA-OR-A5KB-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509533	102509534	Frame_Shift_Ins	-	A	p.G25fs
ACC	TCGA-OR-A5KB-01	MYBBP1A	ENST00000573116.1,ENST00000381556.2,ENST00000254718.4	chr17	4452626:4452737:4453352:4453648:4455174:4455292,	4453353	4453648	4453405	4453405	Frame_Shift_Del	C	-	p.V423fs
ACC	TCGA-OR-A5KB-01	EFTUD2	ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000590367.1,ENST00000426333.2,ENST00000586276.1	chr17	42929776:42929930:42930663:42930758:42930884:42931003,	42930664	42930758	42930702	42930703	Frame_Shift_Ins	-	TC	p.D841fs
ACC	TCGA-OR-A5KB-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50054083	50054083	Frame_Shift_Del	G	-	p.V971fs
ACC	TCGA-OR-A5KB-01	RGSL1	ENST00000542961.1,ENST00000436031.1,ENST00000443996.2,ENST00000415960.2,ENST00000294854.8	chr1	182499378:182499496:182499924:182500045:182501796:182501926,	182499925	182500045	182500036	182500037	Frame_Shift_Del	GG	-	p.785_785del
ACC	TCGA-OR-A5KB-01	MYBBP1A	ENST00000573116.1,ENST00000381556.2,ENST00000254718.4	chr17	4452626:4452737:4453352:4453648:4455174:4455292,	4453353	4453648	4453405	4453406	Frame_Shift_Del	CC	-	p.423_423del
ACC	TCGA-OR-A5KB-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000375695.2	chrX	51638751:51638856:51639504:51640173:51640303:51640367,	51639505	51640173	51639728	51639728	Frame_Shift_Del	G	-	p.R382fs
ACC	TCGA-OR-A5L2-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555727.1	chr14	20864779:20864889:20869142:20869300:20869615:20869740,	20869143	20869300	20869174	20869174	Frame_Shift_Del	C	-	p.N507fs
ACC	TCGA-OR-A5LK-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31323953	31323960	Frame_Shift_Del	CCAGCTTG	-	p.202_204del
ACC	TCGA-OR-A5LK-01	HLA-B	ENST00000434333.1,ENST00000412585.2	chr6	31323283:31323369:31323943:31324219:31324464:31324569,	31323944	31324219	31323953	31323960	Frame_Shift_Del	CCAGCTTG	-	p.202_204del
ACC	TCGA-OR-A5K6-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266117	41266139	Frame_Shift_Del	TGCCACTACCACAGCTCCTTCTC	-	p.38_45del
ACC	TCGA-OR-A5JK-01	BPNT1	ENST00000414869.2,ENST00000322067.7,ENST00000469520.2,ENST00000544404.1	chr1	220233027:220233133:220236098:220236296:220239414:220239459,220233027:220233133:220236098:220236296:220240643:220240735,	220236099	220236296	220236230	220236233	Frame_Shift_Del	GAAA	-	p.180_181del
ACC	TCGA-OR-A5JK-01	BPNT1	ENST00000414869.2,ENST00000322067.7,ENST00000469520.2,ENST00000544404.1	chr1	220233027:220233133:220236098:220236296:220239414:220239459,220233027:220233133:220236098:220236296:220240643:220240735,	220236099	220236296	220236234	220236255	Frame_Shift_Del	CCCAAAGGCGCCTAAACCTAAA	-	p.173_180del
ACC	TCGA-OR-A5K0-01	ARID4A	ENST00000355431.3	chr14	58832741:58832948:58833600:58833747:58838603:58838678,	58833601	58833747	58833675	58833676	Frame_Shift_Del	TA	-	p.1199_1200del
ACC	TCGA-OR-A5JT-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115260577:115260837:115261233:115261366:115262199:115262363,	115261234	115261366	115261240	115261241	Frame_Shift_Ins	-	T	p.N827fs
ACC	TCGA-OR-A5JA-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166410:67166634:67167031:67167136:67168159:67168228,	67167032	67167136	67167109	67167110	Frame_Shift_Del	CA	-	p.160_160del
ACC	TCGA-OR-A5JA-01	SLC22A2	ENST00000366953.3,ENST00000486916.1,ENST00000491092.1	chr6	160662505:160662618:160663325:160663434:160664603:160664818,	160663326	160663434	160663414	160663438	Frame_Shift_Del	TAATTTTTAGCCATTGTAGATCTAA	-	p.427_434del
ACC	TCGA-OR-A5LR-01	MAOA	ENST00000542639.1,ENST00000338702.3	chrX	43591945:43592042:43595473:43595527:43599927:43599985,	43595474	43595527	43595521	43595530	Frame_Shift_Del	AAATAAGGTA	-	p.367_369del
ACC	TCGA-P6-A5OH-01	DNAH17	ENST00000585328.1,ENST00000591369.1,ENST00000590227.1	chr17	76423008:76423189:76424605:76424788:76425201:76425321,	76424606	76424788	76424635	76424635	Frame_Shift_Del	C	-	p.A4187fs
ACC	TCGA-OR-A5LJ-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.F754fs
ACC	TCGA-OR-A5LJ-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823172	155823172	Frame_Shift_Del	T	-	p.M134fs
ACC	TCGA-OR-A5LJ-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049670	69049670	Frame_Shift_Del	A	-	p.F466fs
ACC	TCGA-OR-A5LJ-01	ERCC8	ENST00000543101.1,ENST00000497892.1,ENST00000477893.1,ENST00000265038.5	chr5	60217880:60217982:60224690:60224786:60240758:60240878,	60224691	60224786	60224762	60224765	Frame_Shift_Del	TTTA	-	p.34_35del
ACC	TCGA-OR-A5LJ-01	BAG6	ENST00000375964.6	chr6	31614170:31614300:31615367:31615621:31616453:31616528,	31615368	31615621	31615616	31615617	Frame_Shift_Del	GA	-	p.186_187del
ACC	TCGA-OR-A5LJ-01	PSMC2	ENST00000544811.1,ENST00000435765.1,ENST00000292644.3	chr7	103004589:103004754:103006522:103006610:103007859:103008062,	103006523	103006610	103006564	103006564	Frame_Shift_Del	A	-	p.T266fs
ACC	TCGA-OR-A5LJ-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.L72fs
ACC	TCGA-OR-A5LJ-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12904547:12904672:12923486:12923660:12946458:12946599,	12923487	12923660	12923632	12923632	Frame_Shift_Del	A	-	p.Q282fs
ACC	TCGA-OR-A5LJ-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559113	Frame_Shift_Del	G	-	p.P1074fs
ACC	TCGA-OR-A5LJ-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57113563	57113564	Frame_Shift_Del	AG	-	p.584_584del
ACC	TCGA-OR-A5LJ-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57113563	57113564	Frame_Shift_Del	AG	-	p.584_584del
ACC	TCGA-OR-A5LJ-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107038	49107038	Frame_Shift_Del	G	-	p.Q297fs
ACC	TCGA-OR-A5LJ-01	AFF2	ENST00000370458.1,ENST00000370457.5,ENST00000342251.3	chrX	147582528:147582664:147733519:147733640:147743428:147744289,	147733520	147733640	147733548	147733548	Frame_Shift_Del	A	-	p.L25fs
ACC	TCGA-OR-A5LJ-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
ACC	TCGA-OR-A5LJ-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370291	240370295	Frame_Shift_Del	AGGTT	-	p.726_728del
ACC	TCGA-OR-A5LJ-01	BDP1	ENST00000358731.4,ENST00000380675.2	chr5	70855808:70856064:70858100:70858347:70860580:70863647,	70858101	70858347	70858262	70858262	Frame_Shift_Del	A	-	p.E2553fs
ACC	TCGA-OR-A5LJ-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30491510	30491510	Frame_Shift_Del	C	-	p.G508fs
ACC	TCGA-OR-A5LJ-01	QSER1	ENST00000527788.1,ENST00000399302.2,ENST00000524678.1	chr11	32977533:32977667:32979414:32979632:32987845:32987983,	32979415	32979632	32979554	32979554	Frame_Shift_Del	A	-	p.R1501fs
ACC	TCGA-OR-A5LJ-01	CEP290	ENST00000397838.3,ENST00000309041.7,ENST00000552810.1,ENST00000604024.1	chr12	88505470:88505635:88508196:88508339:88508874:88508959,	88508197	88508339	88508192	88508210	Frame_Shift_Del	CTTACATTAACTAGTCTTT	-	p.680_684del
ACC	TCGA-OR-A5LJ-01	MLEC	ENST00000545525.1,ENST00000228506.3	chr12	121132626:121132803:121132897:121132955:121134118:121134156,	121132898	121132955	121132922	121132923	Frame_Shift_Del	TG	-	p.205_206del
ACC	TCGA-OR-A5LJ-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046886	17046886	Frame_Shift_Del	C	-	p.A351fs
ACC	TCGA-OR-A5LJ-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
ACC	TCGA-OR-A5LJ-01	TYK2	ENST00000531836.1,ENST00000525621.1,ENST00000264818.6,ENST00000529370.1	chr19	10478839:10478878:10478970:10479094:10488889:10489082,	10478971	10479094	10479028	10479028	Frame_Shift_Del	G	-	p.P87fs
ACC	TCGA-OR-A5LJ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938582	76938585	Frame_Shift_Del	TGAT	-	p.722_723del
ACC	TCGA-OR-A5JL-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574023	7574023	Frame_Shift_Del	C	-	p.R335fs
ACC	TCGA-OR-A5KP-01	FBXO42	ENST00000375592.3	chr1	16579590:16579647:16580129:16580226:16582205:16582316,	16580130	16580226	16580181	16580181	Frame_Shift_Del	G	-	p.K272fs
ACC	TCGA-OR-A5KP-01	PPP1CA	ENST00000376745.4,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166210:67166327:67166410:67166634:67168159:67168290,67166210:67166327:67166410:67166634:67167031:67167077,	67166411	67166634	67166486	67166487	Frame_Shift_Del	AG	-	p.235_236del
ACC	TCGA-OR-A5LL-01	RABL2B	ENST00000354869.3,ENST00000395595.3	chr22	51207882:51207977:51208332:51208444:51214199:51214261,51207882:51207980:51208332:51208444:51214199:51214261,	51208333	51208444	51208398	51208399	Frame_Shift_Ins	-	A	p.W115fs
ACC	TCGA-OR-A5KZ-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120833276:120833329:120834546:120834667:120834804:120834892,	120834547	120834667	120834600	120834601	Frame_Shift_Del	TT	-	p.186_187del
ACC	TCGA-OR-A5KZ-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324595	31324604	Frame_Shift_Del	CGGCTCCTCT	-	p.69_72del
ACC	TCGA-OR-A5KZ-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324595	31324604	Frame_Shift_Del	CGGCTCCTCT	-	p.69_72del
ACC	TCGA-OR-A5L3-01	FCRL2	ENST00000368181.4	chr1	157736644:157736761:157740198:157740456:157745564:157745585,	157740199	157740456	157740445	157740445	Frame_Shift_Del	G	-	p.L22fs
ACC	TCGA-OR-A5JE-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288834	33288835	Frame_Shift_Del	AT	-	p.252_252del
ACC	TCGA-OR-A5L4-01	KLF4	ENST00000493306.1,ENST00000374672.4	chr9	110249949:110250548:110251210:110251331:110251448:110251718,	110251211	110251331	110251263	110251293	Frame_Shift_Del	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	p.15_25del
ACC	TCGA-OR-A5K1-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547801	19547801	Frame_Shift_Del	G	-	p.V270fs
ACC	TCGA-OR-A5K1-01	GADD45G	ENST00000375769.1,ENST00000252506.6	chr9	92220346:92220448:92220581:92220795:92220883:92221013,	92220582	92220795	92220669	92220669	Frame_Shift_Del	C	-	p.I81fs
ACC	TCGA-OR-A5JS-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729786	78729786	Frame_Shift_Del	T	-	p.K769fs
ACC	TCGA-P6-A5OG-01	PADI2	ENST00000375486.4,ENST00000375481.1	chr1	17413015:17413194:17418902:17419028:17420061:17420179,	17418903	17419028	17418973	17418973	Frame_Shift_Del	G	-	p.A196fs
ACC	TCGA-P6-A5OG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195513387	195513388	Frame_Shift_Ins	-	A	p.S1688fs
ACC	TCGA-OR-A5JG-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34926429	34926430	Frame_Shift_Ins	-	TT	p.S1631fs
ACC	TCGA-OR-A5JG-01	FNDC3B	ENST00000469491.1,ENST00000415807.2,ENST00000416957.1,ENST00000494000.1,ENST00000336824.4	chr3	172048330:172048505:172050878:172050965:172052733:172052872,	172050879	172050965	172050900	172050901	Frame_Shift_Ins	-	ACACTGGAGAGGATTTAACCTGTACTGTG	p.Y526fs
ACC	TCGA-OR-A5KT-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39898206:39898326:39898719:39898827:39900085:39900304,	39898720	39898827	39898819	39898820	Frame_Shift_Ins	-	T	p.V3791fs
ACC	TCGA-OR-A5KT-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352982	113352982	Frame_Shift_Del	G	-	p.R760fs
ACC	TCGA-OR-A5JO-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31323953	31323960	Frame_Shift_Del	CCAGCTTG	-	p.202_204del
ACC	TCGA-OR-A5JO-01	HLA-B	ENST00000434333.1,ENST00000412585.2	chr6	31323283:31323369:31323943:31324219:31324464:31324569,	31323944	31324219	31323953	31323960	Frame_Shift_Del	CCAGCTTG	-	p.202_204del
ACC	TCGA-OR-A5JP-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000473505.1,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21586805:21586885:21599191:21599404:21605683:21605825,	21599192	21599404	21599251	21599252	Frame_Shift_Ins	-	GT	p.R145fs
ACC	TCGA-OR-A5JP-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574011	7574012	Frame_Shift_Ins	-	CGAAG	p.E339fs
ACC	TCGA-OR-A5LA-01	NF1	ENST00000417592.2,ENST00000581790.1,ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29670026:29670153:29676137:29676269:29677200:29677336,	29676138	29676269	29676201	29676202	Frame_Shift_Del	CT	-	p.2418_2418del
ACC	TCGA-OR-A5LD-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000409503.1,ENST00000531094.1,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151396485:151396762:151397430:151397537:151400298:151400456,	151397431	151397537	151397436	151397437	Frame_Shift_Del	TG	-	p.394_394del
ACC	TCGA-OR-A5KQ-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911239	29911261	Frame_Shift_Del	TTGAGAGCCTACCTGGATGGCAC	-	p.179_187del
ACC	TCGA-OR-A5JB-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000405358.4,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13950906:13950932:13971126:13971374:13975332:13975508,	13971127	13971374	13971174	13971174	Frame_Shift_Del	G	-	p.P252fs
ACC	TCGA-OR-A5JB-01	ELAVL2	ENST00000380117.1,ENST00000397312.2,ENST00000544538.1	chr9	23690101:23692885:23693445:23693484:23701376:23701602,23691808:23692882:23693445:23693484:23701376:23701602,	23693446	23693484	23693475	23693476	Frame_Shift_Ins	-	T	p.N241fs
ACC	TCGA-OR-A5JB-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829226	72829226	Frame_Shift_Del	G	-	p.P2452fs
ACC	TCGA-OR-A5JB-01	RAB3GAP1	ENST00000539493.1,ENST00000264158.8,ENST00000487003.1	chr2	135920555:135920671:135922163:135922266:135926114:135926319,	135922164	135922266	135922249	135922249	Frame_Shift_Del	T	-	p.L897fs
ACC	TCGA-OR-A5JB-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000405358.4,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13950906:13950932:13971126:13971374:13975332:13975508,	13971127	13971374	13971176	13971177	Frame_Shift_Del	GG	-	p.251_252del
ACC	TCGA-OR-A5JB-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829227	72829228	Frame_Shift_Del	GC	-	p.2452_2452del
ACC	TCGA-PK-A5HC-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.V73fs
ACC	TCGA-OR-A5JW-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654828	29654829	Frame_Shift_Ins	-	A	p.L1860fs
ACC	TCGA-OR-A5J2-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266091	41266092	Frame_Shift_Ins	-	A	p.Y30_L31delinsX
ACC	TCGA-OR-A5KX-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814882	214814883	Frame_Shift_Ins	-	A	p.R1067fs
ACC	TCGA-OR-A5JM-01	HSPA4	ENST00000304858.2	chr5	132403108:132403249:132406065:132406188:132408921:132409021,	132406066	132406188	132406071	132406072	Frame_Shift_Del	AT	-	p.104_104del
ACC	TCGA-OR-A5JM-01	UBTF	ENST00000302904.4,ENST00000527034.1,ENST00000529383.1,ENST00000533177.1,ENST00000526094.1,ENST00000436088.1,ENST00000393606.3,ENST00000343638.5	chr17	42287685:42287841:42288159:42288315:42288406:42288520,	42288160	42288315	42288160	42288162	Frame_Shift_Del	CTT	-	p.453_453del
ACC	TCGA-OR-A5JM-01	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943323:12943440:12943798:12943972:12945995:12946213,	12943799	12943972	12943918	12943919	Frame_Shift_Del	CA	-	p.1449_1450del
ACC	TCGA-OR-A5J7-01	PIK3C3	ENST00000593098.1,ENST00000262039.4,ENST00000398870.3	chr18	39629494:39629569:39637846:39638015:39644703:39644794,	39637847	39638015	39637866	39637867	Frame_Shift_Ins	-	T	p.D761fs
ACC	TCGA-OR-A5K9-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138601908	138601908	Frame_Shift_Del	C	-	p.V822fs
ACC	TCGA-OR-A5K9-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223504298:223504414:223505580:223505650:223507569:223507626,	223505581	223505650	223505606	223505607	Frame_Shift_Ins	-	TT	p.I105fs
ACC	TCGA-OR-A5JJ-01	GTPBP10	ENST00000257659.8	chr7	89976043:89976088:89982129:89982323:90001468:90001542,	89982130	89982323	89982277	89982278	Frame_Shift_Del	AG	-	p.60_61del
ACC	TCGA-OR-A5LF-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27519860:27519976:27523069:27523222:27539918:27540042,	27523070	27523222	27523174	27523190	Frame_Shift_Del	CGTTTAAATTCCTTCAG	-	p.336_341del
ACC	TCGA-OR-A5LE-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579716	7579716	Frame_Shift_Del	G	-	p.P27fs
ACC	TCGA-OR-A5LI-01	C19orf54	ENST00000469741.2	chr19	41247726:41247769:41248419:41248675:41249819:41249880,	41248420	41248675	41248646	41248647	Frame_Shift_Del	TG	-	p.250_250del
ACC	TCGA-OR-A5J4-01	NAB2	ENST00000342556.6,ENST00000300131.3	chr12	57485694:57485781:57486230:57486364:57486699:57486751,	57486231	57486364	57486328	57486329	Frame_Shift_Del	GA	-	p.352_352del
ACC	TCGA-OR-A5J4-01	RAX	ENST00000334889.3	chr18	56934266:56936733:56939592:56939846:56940149:56940617,	56939593	56939846	56939705	56939706	Frame_Shift_Ins	-	T	p.T144fs
ACC	TCGA-OR-A5LC-01	ELMSAN1	ENST00000451078.1,ENST00000476562.1,ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74189400:74189550:74191974:74192063:74192735:74192811,	74191975	74192063	74191989	74191989	Frame_Shift_Del	G	-	p.L854fs
ACC	TCGA-OR-A5JY-01	CORO1C	ENST00000420959.2,ENST00000261401.3,ENST00000421578.2,ENST00000551550.1,ENST00000546571.1,ENST00000549772.1,ENST00000552871.1,ENST00000547294.1,ENST00000541050.1,ENST00000550032.1	chr12	109048081:109048186:109055804:109055934:109072047:109072170,109052656:109052695:109055804:109055934:109072047:109072170,	109055805	109055934	109055859	109055862	Frame_Shift_Del	TCTT	-	p.131_132del
ACC	TCGA-OR-A5JY-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324003	31324025	Frame_Shift_Del	TCGCCCTCCAGGTAGGCTCTCCG	-	p.180_187del
ACC	TCGA-OR-A5JY-01	HLA-B	ENST00000434333.1,ENST00000412585.2	chr6	31323283:31323369:31323943:31324219:31324464:31324569,	31323944	31324219	31324003	31324025	Frame_Shift_Del	TCGCCCTCCAGGTAGGCTCTCCG	-	p.180_187del
ACC	TCGA-OR-A5J1-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274159	80274160	Frame_Shift_Ins	-	T	p.S175fs
ACC	TCGA-OR-A5J1-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274162	80274162	Frame_Shift_Del	G	-	p.P174fs
ACC	TCGA-OR-A5J2-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266091	41266092	Frame_Shift_Ins	-	A	p.P30fs
ACC	TCGA-OR-A5J4-01	NAB2	ENST00000342556.6,ENST00000300131.3	chr12	57485694:57485781:57486230:57486364:57486699:57486751,	57486231	57486364	57486328	57486329	Frame_Shift_Del	GA	-	p.R352fs
ACC	TCGA-OR-A5J4-01	RAX	ENST00000334889.3	chr18	56934266:56936733:56939592:56939846:56940149:56940617,	56939593	56939846	56939705	56939706	Frame_Shift_Ins	-	T	p.H144fs
ACC	TCGA-OR-A5J5-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
ACC	TCGA-OR-A5J5-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.P468fs
ACC	TCGA-OR-A5J5-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.G758fs
ACC	TCGA-OR-A5J5-01	SLC38A9	ENST00000396865.2,ENST00000511233.1,ENST00000515159.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54931371:54931485:54941616:54941723:54945034:54945142,	54941617	54941723	54941671	54941671	Frame_Shift_Del	A	-	p.F371fs
ACC	TCGA-OR-A5J5-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672365	151672365	Frame_Shift_Del	C	-	p.P948fs
ACC	TCGA-OR-A5J5-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479332	100479332	Frame_Shift_Del	G	-	p.G106fs
ACC	TCGA-OR-A5J5-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351684	134351685	Frame_Shift_Ins	-	G	p.G1390fs
ACC	TCGA-OR-A5J5-01	PSMC1	ENST00000543772.2,ENST00000261303.8	chr14	90729661:90729786:90730005:90730191:90730384:90730444,	90730006	90730191	90730133	90730137	Frame_Shift_Del	TTTCA	-	p.LS136fs
ACC	TCGA-OR-A5J5-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.G999fs
ACC	TCGA-OR-A5J5-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.G999fs
ACC	TCGA-OR-A5J5-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.G999fs
ACC	TCGA-OR-A5J5-01	EIF3G	ENST00000253108.4,ENST00000588709.1,ENST00000587590.1,ENST00000589009.1,ENST00000589454.1,ENST00000593066.1,ENST00000587993.1	chr19	10227647:10227665:10227759:10227864:10229343:10229403,	10227760	10227864	10227826	10227826	Frame_Shift_Del	G	-	p.P113fs
ACC	TCGA-OR-A5J5-01	EML2	ENST00000245925.3,ENST00000586195.1,ENST00000587152.1,ENST00000536630.1,ENST00000399594.3,ENST00000586902.1,ENST00000588000.1,ENST00000589876.1,ENST00000590580.1,ENST00000588308.1	chr19	46124811:46124895:46129962:46130097:46133208:46133290,46127977:46128076:46129962:46130097:46136118:46136229,46127977:46128076:46129962:46130097:46133208:46133290,	46129963	46130097	46129994	46129994	Frame_Shift_Del	C	-	p.G384fs
ACC	TCGA-OR-A5J5-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661638	40661638	Frame_Shift_Del	A	-	p.S468fs
ACC	TCGA-OR-A5J5-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982957	40982957	Frame_Shift_Del	C	-	p.P27fs
ACC	TCGA-OR-A5J7-01	SPIRE2	ENST00000566337.1,ENST00000378247.3,ENST00000393062.2	chr16	89911729:89911773:89916711:89917068:89920693:89920774,	89916712	89917068	89917049	89917049	Frame_Shift_Del	G	-	p.R209fs
ACC	TCGA-OR-A5J7-01	PIK3C3	ENST00000593098.1,ENST00000262039.4,ENST00000398870.3	chr18	39629494:39629569:39637846:39638015:39644703:39644794,	39637847	39638015	39637866	39637867	Frame_Shift_Ins	-	T	p.W762fs
ACC	TCGA-OR-A5J9-01	LAMA5	ENST00000252999.3	chr20	60894739:60894851:60895614:60895725:60895794:60895946,	60895615	60895725	60895697	60895698	Frame_Shift_Ins	-	G	p.P2226fs
ACC	TCGA-OR-A5JA-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166410:67166634:67167031:67167136:67168159:67168228,	67167032	67167136	67167109	67167110	Frame_Shift_Del	CA	-	p.W149fs
ACC	TCGA-OR-A5JB-01	RAB3GAP1	ENST00000539493.1,ENST00000264158.8,ENST00000487003.1	chr2	135920555:135920671:135922163:135922266:135926114:135926319,	135922164	135922266	135922249	135922249	Frame_Shift_Del	T	-	p.F898fs
ACC	TCGA-OR-A5JB-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000405358.4,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13950906:13950932:13971126:13971374:13975332:13975508,	13971127	13971374	13971174	13971174	Frame_Shift_Del	G	-	p.P235fs
ACC	TCGA-OR-A5JB-01	ELAVL2	ENST00000380117.1,ENST00000397312.2,ENST00000544538.1	chr9	23690101:23692885:23693445:23693484:23701376:23701602,23691808:23692882:23693445:23693484:23701376:23701602,	23693446	23693484	23693475	23693476	Frame_Shift_Ins	-	T	p.T241fs
ACC	TCGA-OR-A5JC-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.G69fs
ACC	TCGA-OR-A5JC-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.G69fs
ACC	TCGA-OR-A5JC-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324604	31324604	Frame_Shift_Del	T	-	p.R68fs
ACC	TCGA-OR-A5JC-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324604	31324604	Frame_Shift_Del	T	-	p.R68fs
ACC	TCGA-OR-A5JF-01	SIRT6	ENST00000601488.1,ENST00000594279.1	chr19	4174874:4174943:4175024:4175108:4175676:4175757,	4175025	4175108	4175089	4175090	Frame_Shift_Ins	-	G	p.A225fs
ACC	TCGA-OR-A5JF-01	SIRT6	ENST00000305232.6,ENST00000599365.1	chr19	4174874:4174943:4175024:4175148:4175676:4175757,4174874:4174943:4175024:4175148:4175838:4175934,	4175025	4175148	4175089	4175090	Frame_Shift_Ins	-	G	p.A225fs
ACC	TCGA-OR-A5JF-01	SIRT6	ENST00000600540.1	chr19	4174874:4174943:4175024:4175757:4175838:4175934,	4175025	4175757	4175089	4175090	Frame_Shift_Ins	-	G	p.A225fs
ACC	TCGA-OR-A5JF-01	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42262853	42262854	Frame_Shift_Ins	-	T	p.K36fs
ACC	TCGA-OR-A5JG-01	FARP2	ENST00000412332.1	chr2	242432807:242432859:242433422:242433556:242433891:242434255,	242433423	242433556	242433486	242433487	Frame_Shift_Ins	-	G	p.P1038fs
ACC	TCGA-OR-A5JG-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34926429	34926430	Frame_Shift_Ins	-	TT	p.F1631fs
ACC	TCGA-OR-A5JI-01	EML6	ENST00000356458.6	chr2	55071183:55071385:55074622:55074760:55077098:55077355,	55074623	55074760	55074739	55074740	Frame_Shift_Ins	-	T	p.F389fs
ACC	TCGA-OR-A5JI-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46822749:46822854:46829580:46829694:46830949:46831050,	46829581	46829694	46829683	46829683	Frame_Shift_Del	T	-	p.K292fs
ACC	TCGA-OR-A5JI-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67302911	67302912	Frame_Shift_Ins	-	T	p.K248fs
ACC	TCGA-OR-A5JJ-01	GTPBP10	ENST00000257659.8	chr7	89976043:89976088:89982129:89982323:90001468:90001542,	89982130	89982323	89982277	89982278	Frame_Shift_Del	AG	-	p.R61fs
ACC	TCGA-OR-A5JJ-01	MYRFL	ENST00000547771.2,ENST00000552032.2	chr12	70272807:70272875:70272974:70273233:70273980:70274072,	70272975	70273233	70273140	70273140	Frame_Shift_Del	C	-	p.A124fs
ACC	TCGA-OR-A5JK-01	BPNT1	ENST00000414869.2,ENST00000322067.7,ENST00000469520.2,ENST00000544404.1	chr1	220233027:220233133:220236098:220236296:220239414:220239459,220233027:220233133:220236098:220236296:220240643:220240735,	220236099	220236296	220236230	220236233	Frame_Shift_Del	GAAA	-	p.FQ180fs
ACC	TCGA-OR-A5JM-01	HSPA4	ENST00000304858.2	chr5	132403108:132403249:132406065:132406188:132408921:132409021,	132406066	132406188	132406071	132406072	Frame_Shift_Del	AT	-	p.TY104fs
ACC	TCGA-OR-A5JM-01	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943323:12943440:12943798:12943972:12945995:12946213,	12943799	12943972	12943918	12943919	Frame_Shift_Del	CA	-	p.V1449fs
ACC	TCGA-OR-A5JP-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000473505.1,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21586805:21586885:21599191:21599404:21605683:21605825,	21599192	21599404	21599251	21599252	Frame_Shift_Ins	-	GT	p.L129fs
ACC	TCGA-OR-A5JP-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574011	7574012	Frame_Shift_Ins	-	CGAAG	p.D339fs
ACC	TCGA-OR-A5JQ-01	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000392129.6,ENST00000580248.1	chr1	165697322:165697358:165712403:165712548:165721338:165721406,	165712404	165712548	165712446	165712446	Frame_Shift_Del	G	-	p.S193fs
ACC	TCGA-OR-A5JQ-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112119	57112119	Frame_Shift_Del	G	-	p.P1065fs
ACC	TCGA-OR-A5JT-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115260577:115260837:115261233:115261366:115262199:115262363,	115261234	115261366	115261240	115261241	Frame_Shift_Ins	-	T	p.I827fs
ACC	TCGA-OR-A5JX-01	TEKT4	ENST00000468063.1,ENST00000295201.4	chr2	95539264:95539335:95539709:95539853:95540520:95540743,	95539710	95539853	95539829	95539830	Frame_Shift_Ins	-	G	p.L230fs
ACC	TCGA-OR-A5JY-01	CORO1C	ENST00000420959.2,ENST00000261401.3,ENST00000421578.2,ENST00000551550.1,ENST00000546571.1,ENST00000549772.1,ENST00000552871.1,ENST00000547294.1,ENST00000541050.1,ENST00000550032.1	chr12	109048081:109048186:109055804:109055934:109072047:109072170,109052656:109052695:109055804:109055934:109072047:109072170,	109055805	109055934	109055859	109055862	Frame_Shift_Del	TCTT	-	p.KR131fs
ACC	TCGA-OR-A5K0-01	ARID4A	ENST00000355431.3	chr14	58832741:58832948:58833600:58833747:58838603:58838678,	58833601	58833747	58833675	58833676	Frame_Shift_Del	TA	-	p.Y1200fs
ACC	TCGA-OR-A5K3-01	AGAP3	ENST00000463381.1	chr7	150825682:150825771:150831486:150831655:150838984:150839139,	150831487	150831655	150831565	150831566	Frame_Shift_Ins	-	G	p.S469fs
ACC	TCGA-OR-A5K4-01	GPT2	ENST00000440783.2,ENST00000340124.4,ENST00000562132.1	chr16	46931559:46931649:46934593:46934702:46940753:46940887,	46934594	46934702	46934689	46934690	Frame_Shift_Ins	-	G	p.E44fs
ACC	TCGA-OR-A5K5-01	SLC35F5	ENST00000409342.1,ENST00000409106.1,ENST00000245680.2,ENST00000498768.1	chr2	114508001:114508145:114512741:114512883:114513030:114513121,	114512742	114512883	114512866	114512869	Frame_Shift_Del	ACAC	-	p.CV49fs
ACC	TCGA-OR-A5K5-01	DCAF15	ENST00000587307.1,ENST00000254337.6	chr19	14071098:14071203:14071276:14071392:14071751:14071913,	14071277	14071392	14071333	14071334	Frame_Shift_Ins	-	G	p.R563fs
ACC	TCGA-OR-A5K5-01	DCAF15	ENST00000588523.1	chr19	14070795:14070881:14071098:14071392:14071751:14071913,	14071099	14071392	14071333	14071334	Frame_Shift_Ins	-	G	p.R563fs
ACC	TCGA-OR-A5K6-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266117	41266139	Frame_Shift_Del	TGCCACTACCACAGCTCCTTCTC	-	p.GATTTAPSL38fs
ACC	TCGA-OR-A5K8-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
ACC	TCGA-OR-A5KB-01	FAM49A	ENST00000406434.1,ENST00000355549.2,ENST00000381323.3	chr2	16742723:16742801:16743272:16743409:16745256:16745362,	16743273	16743409	16743378	16743378	Frame_Shift_Del	C	-	p.L110fs
ACC	TCGA-OR-A5KB-01	SULT1C3	ENST00000376700.1	chr2	108875189:108875284:108875421:108875602:108877023:108877136,	108875422	108875602	108875465	108875486	Frame_Shift_Del	AAACTTGGTCAGGTGATGTTAT	-	p.KTWSGDVI222fs
ACC	TCGA-OR-A5KB-01	EFTUD2	ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000590367.1,ENST00000426333.2,ENST00000586276.1	chr17	42929776:42929930:42930663:42930758:42930884:42931003,	42930664	42930758	42930702	42930703	Frame_Shift_Ins	-	TC	p.V841fs
ACC	TCGA-OR-A5KB-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50054083	50054083	Frame_Shift_Del	G	-	p.G972fs
ACC	TCGA-OR-A5KO-01	POU2F2	ENST00000560558.1,ENST00000389341.5,ENST00000526816.2,ENST00000560398.1,ENST00000534559.1	chr19	42596018:42596092:42596220:42596422:42597980:42598047,42595381:42595743:42596220:42596422:42597980:42598047,	42596221	42596422	42596242	42596243	Frame_Shift_Ins	-	A	p.R444fs
ACC	TCGA-OR-A5KO-01	POU2F2	ENST00000529067.1	chr19	42595381:42595743:42596220:42596286:42597980:42598047,	42596221	42596286	42596242	42596243	Frame_Shift_Ins	-	A	p.R444fs
ACC	TCGA-OR-A5KP-01	FBXO42	ENST00000375592.3	chr1	16579590:16579647:16580129:16580226:16582205:16582316,	16580130	16580226	16580181	16580181	Frame_Shift_Del	G	-	p.S271fs
ACC	TCGA-OR-A5KP-01	PPP1CA	ENST00000376745.4,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166210:67166327:67166410:67166634:67168159:67168290,67166210:67166327:67166410:67166634:67167031:67167077,	67166411	67166634	67166486	67166487	Frame_Shift_Del	AG	-	p.S224fs
ACC	TCGA-OR-A5KT-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39898206:39898326:39898719:39898827:39900085:39900304,	39898720	39898827	39898819	39898820	Frame_Shift_Ins	-	T	p.I5853fs
ACC	TCGA-OR-A5KZ-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120833276:120833329:120834546:120834667:120834804:120834892,	120834547	120834667	120834600	120834601	Frame_Shift_Del	TT	-	p.F187fs
ACC	TCGA-OR-A5L2-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
ACC	TCGA-OR-A5L2-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555727.1	chr14	20864779:20864889:20869142:20869300:20869615:20869740,	20869143	20869300	20869174	20869174	Frame_Shift_Del	C	-	p.G506fs
ACC	TCGA-OR-A5L2-01	DMKN	ENST00000440396.1,ENST00000424570.2,ENST00000451297.2,ENST00000339686.3,ENST00000447113.2,ENST00000418261.1	chr19	36001085:36001154:36002312:36002495:36002664:36002715,	36002313	36002495	36002403	36002404	Frame_Shift_Del	GC	-	p.S278fs
ACC	TCGA-OR-A5L4-01	KLF4	ENST00000493306.1,ENST00000374672.4	chr9	110249949:110250548:110251210:110251331:110251448:110251718,	110251211	110251331	110251263	110251293	Frame_Shift_Del	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	p.ALLPSFSTFAS15fs
ACC	TCGA-OR-A5L4-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450110	29450110	Frame_Shift_Del	A	-	p.P174fs
ACC	TCGA-OR-A5L5-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677692	88677693	Frame_Shift_Del	GA	-	p.R408fs
ACC	TCGA-OR-A5L8-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581488	17581489	Frame_Shift_Ins	-	T	p.F37fs
ACC	TCGA-OR-A5L9-01	VWF	ENST00000261405.5	chr12	6131905:6132064:6132796:6132953:6134745:6134859,	6132797	6132953	6132943	6132944	Frame_Shift_Ins	-	C	p.A1078fs
ACC	TCGA-OR-A5L9-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581488	17581489	Frame_Shift_Ins	-	T	p.F37fs
ACC	TCGA-OR-A5LB-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000380265.5,ENST00000506714.1	chr4	89306650:89306727:89311803:89312031:89314639:89314734,	89311804	89312031	89311864	89311865	Frame_Shift_Ins	-	C	p.S166fs
ACC	TCGA-OR-A5LB-01	OSMR	ENST00000274276.3	chr5	38921719:38921896:38923251:38923356:38924523:38924697,	38923252	38923356	38923329	38923329	Frame_Shift_Del	A	-	p.K616fs
ACC	TCGA-OR-A5LB-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086413	144086414	Frame_Shift_Ins	-	A	p.*226fs
ACC	TCGA-OR-A5LB-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76112242	76112242	Frame_Shift_Del	A	-	p.H229fs
ACC	TCGA-OR-A5LB-01	TRIM21	ENST00000254436.7	chr11	4408197:4408220:4409529:4409760:4410883:4410979,	4409530	4409760	4409704	4409705	Frame_Shift_Ins	-	T	p.I187fs
ACC	TCGA-OR-A5LB-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182525	59182526	Frame_Shift_Del	TC	-	p.R678fs
ACC	TCGA-OR-A5LB-01	BCL7C	ENST00000572628.1,ENST00000380317.4,ENST00000215115.4	chr16	30904035:30904068:30904160:30904269:30904532:30904611,	30904161	30904269	30904237	30904238	Frame_Shift_Del	TC	-	p.R68fs
ACC	TCGA-OR-A5LB-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996512	45996513	Frame_Shift_Ins	-	G	p.H39fs
ACC	TCGA-OR-A5LC-01	PARD6A	ENST00000458121.2	chr16	67694861:67695004:67695357:67695580:67695798:67696633,	67695358	67695580	67695546	67695547	Frame_Shift_Ins	-	C	p.GP84fs
ACC	TCGA-OR-A5LD-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000409503.1,ENST00000531094.1,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151396485:151396762:151397430:151397537:151400298:151400456,	151397431	151397537	151397436	151397437	Frame_Shift_Del	TG	-	p.HM393fs
ACC	TCGA-OR-A5LD-01	ARPC2	ENST00000478612.1	chr2	219099074:219099120:219103386:219103573:219104113:219104207,219093525:219093573:219103386:219103573:219104113:219104207,	219103387	219103573	219103504	219103505	Frame_Shift_Ins	-	C	p.S129fs
ACC	TCGA-OR-A5LF-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27519860:27519976:27523069:27523222:27539918:27540042,	27523070	27523222	27523174	27523190	Frame_Shift_Del	CGTTTAAATTCCTTCAG	-	p.LKEFKR336fs
ACC	TCGA-OR-A5LI-01	MEGF11	ENST00000490495.1,ENST00000360698.4	chr15	66208485:66208614:66208935:66209294:66210303:66210432,	66208936	66209294	66209208	66209209	Frame_Shift_Ins	-	G	p.P725fs
ACC	TCGA-OR-A5LI-01	MEGF11	ENST00000288745.3,ENST00000395614.1,ENST00000409699.2,ENST00000395625.2,ENST00000422354.1	chr15	66208485:66208614:66209165:66209294:66210303:66210432,	66209166	66209294	66209208	66209209	Frame_Shift_Ins	-	G	p.P725fs
ACC	TCGA-OR-A5LI-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6080879:6080950:6093353:6093527:6138192:6138295,	6093354	6093527	6093437	6093437	Frame_Shift_Del	T	-	p.E430fs
ACC	TCGA-OR-A5LI-01	C19orf54	ENST00000469741.2	chr19	41247726:41247769:41248419:41248675:41249819:41249880,	41248420	41248675	41248646	41248647	Frame_Shift_Del	TG	-	p.PS249fs
ACC	TCGA-OR-A5LJ-01	MYOM3	ENST00000330966.7,ENST00000374434.3,ENST00000329601.7	chr1	24406505:24406684:24407819:24407946:24408490:24408678,	24407820	24407946	24407850	24407853	Frame_Shift_Del	CAAA	-	p.FE793fs
ACC	TCGA-OR-A5LJ-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.G758fs
ACC	TCGA-OR-A5LJ-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049670	69049670	Frame_Shift_Del	A	-	p.K466fs
ACC	TCGA-OR-A5LJ-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539571	187539574	Frame_Shift_Del	ATCT	-	p.ID2722fs
ACC	TCGA-OR-A5LJ-01	ERCC8	ENST00000543101.1,ENST00000497892.1,ENST00000477893.1,ENST00000265038.5	chr5	60217880:60217982:60224690:60224786:60240758:60240878,	60224691	60224786	60224762	60224765	Frame_Shift_Del	TTTA	-	p.NK33fs
ACC	TCGA-OR-A5LJ-01	BAG6	ENST00000375964.6	chr6	31614170:31614300:31615367:31615621:31616453:31616528,	31615368	31615621	31615616	31615617	Frame_Shift_Del	GA	-	p.L186fs
ACC	TCGA-OR-A5LJ-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.LK72fs
ACC	TCGA-OR-A5LJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828580	61828580	Frame_Shift_Del	T	-	p.K4020fs
ACC	TCGA-OR-A5LJ-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12904547:12904672:12923486:12923660:12946458:12946599,	12923487	12923660	12923632	12923632	Frame_Shift_Del	A	-	p.Q267fs
ACC	TCGA-OR-A5LJ-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57113563	57113564	Frame_Shift_Del	AG	-	p.L584fs
ACC	TCGA-OR-A5LJ-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57113563	57113564	Frame_Shift_Del	AG	-	p.L584fs
ACC	TCGA-OR-A5LJ-01	ZFYVE19	ENST00000355341.4,ENST00000299173.10,ENST00000564258.1,ENST00000570108.1,ENST00000336455.5,ENST00000561768.1,ENST00000563497.1	chr15	41105910:41106009:41106140:41106268:41106345:41106520,	41106141	41106268	41106184	41106185	Frame_Shift_Ins	-	C	p.P418fs
ACC	TCGA-OR-A5LJ-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639980	17639980	Frame_Shift_Del	T	-	p.K391fs
ACC	TCGA-OR-A5LJ-01	AFF2	ENST00000370458.1,ENST00000370457.5,ENST00000342251.3	chrX	147582528:147582664:147733519:147733640:147743428:147744289,	147733520	147733640	147733548	147733548	Frame_Shift_Del	A	-	p.K27fs
ACC	TCGA-OR-A5LL-01	RFC1	ENST00000381897.1	chr4	39308211:39308321:39310255:39310652:39313064:39313169,39308253:39308324:39310255:39310652:39313064:39313169,	39310256	39310652	39310527	39310528	Frame_Shift_Ins	-	A	p.C538fs
ACC	TCGA-OR-A5LL-01	WNT2	ENST00000265441.3,ENST00000449446.1	chr7	116917584:116918438:116937665:116937930:116955124:116955338,	116937666	116937930	116937913	116937913	Frame_Shift_Del	C	-	p.L202fs
ACC	TCGA-OR-A5LL-01	WNT2	ENST00000265441.3,ENST00000449446.1	chr7	116917584:116918438:116937665:116937930:116955124:116955338,	116937666	116937930	116937915	116937916	Frame_Shift_Del	AG	-	p.FL201fs
ACC	TCGA-OR-A5LN-01	ANO4	ENST00000392977.3,ENST00000392979.3,ENST00000299222.9	chr12	101365083:101365184:101368622:101368667:101381316:101381448,	101368623	101368667	101368641	101368642	Frame_Shift_Ins	-	C	p.LP157fs
ACC	TCGA-OR-A5LN-01	ANO4	ENST00000549155.1,ENST00000538618.1	chr12	101365083:101365184:101368560:101368667:101381316:101381448,	101368561	101368667	101368641	101368642	Frame_Shift_Ins	-	C	p.LP157fs
ACC	TCGA-P6-A5OG-01	PADI2	ENST00000375486.4,ENST00000375481.1	chr1	17413015:17413194:17418902:17419028:17420061:17420179,	17418903	17419028	17418973	17418973	Frame_Shift_Del	G	-	p.P195fs
ACC	TCGA-P6-A5OG-01	CSF1	ENST00000344188.5,ENST00000369801.1	chr1	110464468:110464616:110465787:110466333:110466681:110466812,	110465788	110466333	110466286	110466286	Frame_Shift_Del	C	-	p.S348fs
ACC	TCGA-P6-A5OG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195513387	195513388	Frame_Shift_Ins	-	A	p.C1688fs
ACC	TCGA-P6-A5OH-01	DDB2	ENST00000378603.3,ENST00000256996.4	chr11	47256123:47256223:47256307:47256485:47256820:47256963,	47256308	47256485	47256376	47256376	Frame_Shift_Del	C	-	p.F257fs
ACC	TCGA-P6-A5OH-01	DNAH17	ENST00000585328.1,ENST00000591369.1,ENST00000590227.1	chr17	76423008:76423189:76424605:76424788:76425201:76425321,	76424606	76424788	76424635	76424635	Frame_Shift_Del	C	-	p.A4181fs
ACC	TCGA-PA-A5YG-01	KNOP1	ENST00000219837.7,ENST00000565844.1	chr16	19721830:19721908:19722693:19722762:19725439:19725899,	19722694	19722762	19722724	19722724	Frame_Shift_Del	T	-	p.K319fs
ACC	TCGA-PA-A5YG-01	TNMD	ENST00000373031.4	chrX	99852500:99852654:99854012:99854179:99854504:99854882,	99854013	99854179	99854070	99854070	Frame_Shift_Del	A	-	p.E212fs
ACC	TCGA-PK-A5HA-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
ACC	TCGA-PK-A5HB-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
ACC	TCGA-PK-A5HB-01	LRRC42	ENST00000319223.4,ENST00000371370.3,ENST00000444987.1	chr1	54418011:54418145:54423821:54423953:54426028:54426141,	54423822	54423953	54423901	54423902	Frame_Shift_Ins	-	T	p.W185fs
ACC	TCGA-PK-A5HB-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898610	159898610	Frame_Shift_Del	C	-	p.G856fs
ACC	TCGA-PK-A5HB-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44041615:44041728:44047053:44047239:44049935:44050074,	44047054	44047239	44047175	44047175	Frame_Shift_Del	G	-	p.H115fs
ACC	TCGA-PK-A5HB-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127462	170127462	Frame_Shift_Del	A	-	p.S758fs
ACC	TCGA-PK-A5HB-01	SCRN3	ENST00000490927.1	chr2	175260472:175260545:175264649:175264831:175265717:175265782,	175264650	175264831	175264719	175264720	Frame_Shift_Ins	-	G	p.G77fs
ACC	TCGA-PK-A5HB-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000504194.1,ENST00000382788.3,ENST00000338806.4	chr4	3429825:3429896:3430284:3430438:3432133:3432174,	3430285	3430438	3430399	3430399	Frame_Shift_Del	A	-	p.K1178fs
ACC	TCGA-PK-A5HB-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462464	39462464	Frame_Shift_Del	A	-	p.K36fs
ACC	TCGA-PK-A5HB-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336953	56336954	Frame_Shift_Ins	-	A	p.C123fs
ACC	TCGA-PK-A5HB-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43615949:43616167:43619133:43619221:43624133:43624222,	43619134	43619221	43619202	43619203	Frame_Shift_Ins	-	A	p.E223fs
ACC	TCGA-PK-A5HB-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023941	64023941	Frame_Shift_Del	T	-	p.R91fs
ACC	TCGA-PK-A5HB-01	GALNT10	ENST00000519544.1,ENST00000425427.2,ENST00000297107.6,ENST00000520647.1	chr5	153709131:153709298:153760007:153760191:153765872:153765990,153755876:153756022:153760007:153760191:153765872:153765990,	153760008	153760191	153760166	153760166	Frame_Shift_Del	A	-	p.K305fs
ACC	TCGA-PK-A5HB-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173383	154173383	Frame_Shift_Del	C	-	p.P221fs
ACC	TCGA-PK-A5HB-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173383	154173383	Frame_Shift_Del	C	-	p.P221fs
ACC	TCGA-PK-A5HB-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
ACC	TCGA-PK-A5HB-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635951	32635951	Frame_Shift_Del	T	-	p.N638fs
ACC	TCGA-PK-A5HB-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.K266fs
ACC	TCGA-PK-A5HB-01	RORA	ENST00000309157.4,ENST00000261523.5,ENST00000335670.6,ENST00000449337.2	chr15	60797804:60797828:60803424:60803820:60806814:60806956,	60803425	60803820	60803784	60803785	Frame_Shift_Del	TC	-	p.D154fs
ACC	TCGA-PK-A5HB-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338131	19338131	Frame_Shift_Del	C	-	p.P569fs
ACC	TCGA-PK-A5HB-01	DMKN	ENST00000440396.1,ENST00000424570.2,ENST00000451297.2,ENST00000339686.3,ENST00000447113.2,ENST00000418261.1	chr19	36001085:36001154:36002312:36002495:36002664:36002715,	36002313	36002495	36002401	36002401	Frame_Shift_Del	C	-	p.S278fs
ACC	TCGA-PK-A5HB-01	DMKN	ENST00000440396.1,ENST00000424570.2,ENST00000451297.2,ENST00000339686.3,ENST00000447113.2,ENST00000418261.1	chr19	36001085:36001154:36002312:36002495:36002664:36002715,	36002313	36002495	36002403	36002404	Frame_Shift_Del	GC	-	p.S278fs
ACC	TCGA-PK-A5HB-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158041	50158042	Frame_Shift_Ins	-	C	p.P1178fs
ACC	TCGA-PK-A5HC-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.G73fs
BLCA	TCGA-2F-A9KP-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101060489:101060623:101062529:101062798:101066715:101066757,	101062530	101062798	101062549	101062549	Frame_Shift_Del	T	-	p.K696fs
BLCA	TCGA-2F-A9KP-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698176	2698177	Frame_Shift_Ins	-	A	p.K831fs
BLCA	TCGA-2F-A9KP-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
BLCA	TCGA-2F-A9KT-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151904384:151904513:151917607:151917820:151919085:151919151,	151917608	151917820	151917708	151917708	Frame_Shift_Del	C	-	p.L1204fs
BLCA	TCGA-2F-A9KW-01	KHSRP	ENST00000595223.1,ENST00000398148.3	chr19	6415619:6415745:6415818:6415907:6416308:6416418,	6415819	6415907	6415898	6415898	Frame_Shift_Del	C	-	p.G536fs
BLCA	TCGA-4Z-AA7N-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761192	93761193	Frame_Shift_Ins	-	T	p.K58fs
BLCA	TCGA-4Z-AA7Q-01	RECQL	ENST00000421138.2,ENST00000542432.1,ENST00000396093.3,ENST00000314748.6,ENST00000536964.1,ENST00000539672.1,ENST00000444129.2,ENST00000536240.1	chr12	21643308:21643312:21644452:21644650:21652488:21652549,	21644453	21644650	21644546	21644547	Frame_Shift_Ins	-	T	p.V41fs
BLCA	TCGA-4Z-AA7R-01	COL14A1	ENST00000537875.1,ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000498051.2	chr8	121174664:121174808:121180399:121180486:121209029:121209185,	121180400	121180486	121180411	121180411	Frame_Shift_Del	G	-	p.E121fs
BLCA	TCGA-4Z-AA7S-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31613172:31613315:31632522:31633189:31648743:31648836,	31632523	31633189	31633175	31633175	Frame_Shift_Del	T	-	p.K84fs
BLCA	TCGA-4Z-AA7S-01	OTOGL	ENST00000547103.1,ENST00000458043.2	chr12	80672807:80672946:80690606:80690741:80696413:80696563,	80690607	80690741	80690713	80690713	Frame_Shift_Del	T	-	p.I1003fs
BLCA	TCGA-4Z-AA7S-01	FBLN5	ENST00000267620.10,ENST00000556154.1,ENST00000342058.4	chr14	92336570:92336729:92343830:92344026:92347635:92347762,	92343831	92344026	92343870	92343870	Frame_Shift_Del	C	-	p.Q423fs
BLCA	TCGA-4Z-AA7W-01	WNT5A	ENST00000474267.1,ENST00000264634.4,ENST00000497027.1,ENST00000482079.1	chr3	55508364:55508657:55513341:55513592:55514812:55514946,	55513342	55513592	55513487	55513488	Frame_Shift_Ins	-	A	p.L82fs
BLCA	TCGA-4Z-AA7W-01	DHTKD1	ENST00000437298.1	chr10	12111022:12111186:12123470:12123626:12126538:12126750,	12123471	12123626	12123607	12123607	Frame_Shift_Del	G	-	p.Q97fs
BLCA	TCGA-4Z-AA7Y-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462198	16462199	Frame_Shift_Ins	-	G	p.P460fs
BLCA	TCGA-4Z-AA7Y-01	FAM168B	ENST00000409185.1,ENST00000389915.3	chr2	131812844:131813022:131813125:131813268:131829427:131829511,	131813126	131813268	131813228	131813228	Frame_Shift_Del	G	-	p.P65fs
BLCA	TCGA-4Z-AA7Y-01	CAMSAP3	ENST00000446248.2,ENST00000160298.4	chr19	7675585:7675679:7675762:7675817:7675980:7676054,	7675763	7675817	7675769	7675769	Frame_Shift_Del	C	-	p.S361fs
BLCA	TCGA-4Z-AA80-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699496	17699496	Frame_Shift_Del	T	-	p.P1078fs
BLCA	TCGA-4Z-AA81-01	RYR2	ENST00000360064.6,ENST00000608590.1,ENST00000366574.2,ENST00000542537.1	chr1	237965155:237965216:237969436:237969583:237972200:237972335,	237969437	237969583	237969493	237969494	Frame_Shift_Ins	-	T	p.F4737fs
BLCA	TCGA-4Z-AA81-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881511	48881511	Frame_Shift_Del	G	-	p.W78fs
BLCA	TCGA-4Z-AA81-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
BLCA	TCGA-4Z-AA81-01	SLC43A2	ENST00000572135.1,ENST00000574274.1,ENST00000412517.3,ENST00000574743.1,ENST00000572801.1,ENST00000571650.1,ENST00000382147.4,ENST00000301335.5	chr17	1494200:1494242:1494562:1494765:1494859:1494993,	1494563	1494765	1494615	1494616	Frame_Shift_Ins	-	GT	p.K293fs
BLCA	TCGA-4Z-AA82-01	RXRA	ENST00000481739.1	chr9	137218425:137218505:137293477:137293728:137299994:137300145,	137293478	137293728	137293678	137293679	Frame_Shift_Ins	-	T	p.M77fs
BLCA	TCGA-4Z-AA82-01	ARHGAP17	ENST00000572314.1,ENST00000441763.2,ENST00000289968.6	chr16	24946790:24946960:24950684:24950918:24953307:24953464,	24950685	24950918	24950887	24950887	Frame_Shift_Del	G	-	p.H508fs
BLCA	TCGA-4Z-AA83-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699846	17699847	Frame_Shift_Ins	-	G	p.E1196fs
BLCA	TCGA-4Z-AA84-01	BIRC6	ENST00000421745.2	chr2	32737999:32738221:32740056:32740837:32743320:32743464,	32740057	32740837	32740564	32740577	Frame_Shift_Del	AGTTGGCAATAGCC	-	p.VGNSH3693fs
BLCA	TCGA-4Z-AA84-01	SLC23A2	ENST00000468355.1,ENST00000338244.1,ENST00000379333.1	chr20	4866466:4866555:4880200:4880358:4883087:4883204,	4880201	4880358	4880206	4880207	Frame_Shift_Del	TC	-	p.G159fs
BLCA	TCGA-4Z-AA84-01	PICK1	ENST00000466374.1,ENST00000356976.3,ENST00000469819.1,ENST00000424694.1,ENST00000484021.1,ENST00000468288.1,ENST00000435166.1,ENST00000437453.1,ENST00000404072.3	chr22	38453826:38453857:38455240:38455352:38461008:38461137,	38455241	38455352	38455260	38455260	Frame_Shift_Del	G	-	p.G21fs
BLCA	TCGA-4Z-AA87-01	MAGOH	ENST00000371470.3,ENST00000495868.1	chr1	53692602:53692816:53694543:53694626:53701248:53701307,53692602:53692816:53694543:53694626:53699213:53699324,	53694544	53694626	53694617	53694617	Frame_Shift_Del	T	-	p.I90fs
BLCA	TCGA-4Z-AA87-01	EPG5	ENST00000592272.1,ENST00000590884.1,ENST00000587884.1,ENST00000282041.5,ENST00000585906.1	chr18	43464581:43464776:43467715:43467872:43469762:43469905,	43467716	43467872	43467788	43467788	Frame_Shift_Del	G	-	p.Y1679fs
BLCA	TCGA-5N-A9KM-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980398	201980399	Frame_Shift_Ins	-	C	p.N46fs
BLCA	TCGA-5N-A9KM-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980398	201980399	Frame_Shift_Ins	-	C	p.N46fs
BLCA	TCGA-BL-A0C8-01	SLMAP	ENST00000417128.1,ENST00000295952.3,ENST00000428312.1,ENST00000449503.2,ENST00000416658.1,ENST00000295951.3,ENST00000495364.1,ENST00000461354.1,ENST00000459654.1	chr3	57882599:57882659:57893610:57893733:57894802:57894877,	57893611	57893733	57893702	57893702	Frame_Shift_Del	A	-	p.R497fs
BLCA	TCGA-BL-A0C8-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431511	36431517	Frame_Shift_Del	CCAGCTG	-	p.TSC395fs
BLCA	TCGA-BL-A13I-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094409	27094410	Frame_Shift_Del	AA	-	p.N1040fs
BLCA	TCGA-BL-A13J-01	EDC4	ENST00000358933.5,ENST00000536072.2,ENST00000573992.1,ENST00000574770.1	chr16	67911411:67911559:67911643:67911748:67912068:67912178,	67911644	67911748	67911712	67911712	Frame_Shift_Del	C	-	p.I286fs
BLCA	TCGA-BL-A3JM-01	SPTBN4	ENST00000352632.3,ENST00000392025.1,ENST00000598249.1,ENST00000597389.1	chr19	41075562:41075632:41076341:41076634:41077924:41078098,	41076342	41076634	41076449	41076450	Frame_Shift_Ins	-	A	p.K2379fs
BLCA	TCGA-BL-A5ZZ-01	KMT2D	ENST00000301067.7	chr12	49437650:49437781:49437982:49438087:49438185:49438305,	49437983	49438087	49438032	49438033	Frame_Shift_Del	CC	-	p.G1713fs
BLCA	TCGA-BL-A5ZZ-01	PSMC6	ENST00000556813.1,ENST00000554044.1,ENST00000445930.2,ENST00000555339.1,ENST00000557085.1,ENST00000553899.1,ENST00000458604.2,ENST00000606149.1	chr14	53175481:53175534:53178127:53178242:53180598:53180620,53177818:53177886:53178127:53178242:53180598:53180620,	53178128	53178242	53178137	53178138	Frame_Shift_Del	GA	-	p.R127fs
BLCA	TCGA-BL-A5ZZ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101401	27101402	Frame_Shift_Ins	-	C	p.P1562fs
BLCA	TCGA-BT-A20N-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652875	55652876	Frame_Shift_Ins	-	T	p.H366fs
BLCA	TCGA-BT-A20P-01	ZCCHC8	ENST00000336229.4,ENST00000540586.1,ENST00000543897.1,ENST00000536306.1	chr12	122973932:122974010:122975008:122975114:122977261:122977336,	122975009	122975114	122975027	122975027	Frame_Shift_Del	G	-	p.S135fs
BLCA	TCGA-BT-A20P-01	PDXK	ENST00000468090.1	chr21	45153949:45154004:45161547:45161652:45165959:45166006,	45161548	45161652	45161607	45161607	Frame_Shift_Del	G	-	p.G68fs
BLCA	TCGA-BT-A20Q-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981471:201981564:201981767:201981887:201982074:201982164,	201981768	201981887	201981870	201981871	Frame_Shift_Ins	-	T	p.D195fs
BLCA	TCGA-BT-A20R-01	ARHGAP27	ENST00000442348.1,ENST00000532891.2,ENST00000376922.2,ENST00000532038.1,ENST00000531735.1,ENST00000455881.1,ENST00000428638.1,ENST00000528384.1	chr17	43473428:43473483:43473572:43473650:43473852:43473951,	43473573	43473650	43473589	43473589	Frame_Shift_Del	G	-	p.R523fs
BLCA	TCGA-BT-A20R-01	ARHGAP27	ENST00000581638.1	chr17	43473428:43473483:43473572:43473951:43474033:43474136,	43473573	43473951	43473589	43473589	Frame_Shift_Del	G	-	p.R523fs
BLCA	TCGA-BT-A20T-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44733169:44733233:44820528:44820637:44833910:44833960,	44820529	44820637	44820575	44820575	Frame_Shift_Del	T	-	p.V91fs
BLCA	TCGA-BT-A20V-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647320	Frame_Shift_Del	A	-	p.K816fs
BLCA	TCGA-BT-A20V-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
BLCA	TCGA-BT-A20V-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465981	59465981	Frame_Shift_Del	A	-	p.K890fs
BLCA	TCGA-BT-A20W-01	TMEM184B	ENST00000474416.1,ENST00000403210.1,ENST00000361684.4,ENST00000436674.1,ENST00000464059.1,ENST00000361906.3	chr22	38622810:38622877:38626674:38626750:38627249:38627324,	38626675	38626750	38626692	38626692	Frame_Shift_Del	G	-	p.L170fs
BLCA	TCGA-BT-A2LA-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998127	169998128	Frame_Shift_Ins	-	A	p.LK273fs
BLCA	TCGA-BT-A2LB-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277474	238277475	Frame_Shift_Del	CA	-	p.L1544fs
BLCA	TCGA-BT-A2LB-01	ULK4	ENST00000301831.4,ENST00000460406.1	chr3	41841624:41841785:41860914:41860998:41877355:41877463,	41860915	41860998	41860995	41860995	Frame_Shift_Del	C	-	p.E590fs
BLCA	TCGA-BT-A2LB-01	NFE2L3	ENST00000056233.3	chr7	26217622:26217742:26223320:26223404:26224152:26226745,	26223321	26223404	26223328	26223340	Frame_Shift_Del	TGAATGGGACAGA	-	p.LNGTD253fs
BLCA	TCGA-BT-A2LB-01	CCNY	ENST00000339497.5,ENST00000374706.1,ENST00000265375.9,ENST00000497692.1,ENST00000465416.1,ENST00000374704.4	chr10	35819123:35819171:35841946:35842113:35854950:35855056,	35841947	35842113	35842099	35842100	Frame_Shift_Del	CA	-	p.T245fs
BLCA	TCGA-BT-A2LD-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	162962	162962	Frame_Shift_Del	G	-	p.V569fs
BLCA	TCGA-BT-A2LD-01	ZNF341	ENST00000497876.1,ENST00000342427.2,ENST00000375200.1	chr20	32369096:32369193:32371537:32371670:32376668:32376780,	32371538	32371670	32371588	32371589	Frame_Shift_Ins	-	G	p.G591fs
BLCA	TCGA-BT-A2LD-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44820528:44820637:44833910:44833960:44870205:44870264,	44833911	44833960	44833924	44833924	Frame_Shift_Del	C	-	p.Y116fs
BLCA	TCGA-BT-A3PH-01	HRAS	ENST00000493230.1,ENST00000417302.1,ENST00000462734.1,ENST00000397594.1	chr11	532728:532755:533276:533358:533452:533595,	533277	533358	533312	533321	Frame_Shift_Del	GGGTCCCAGA	-	p.LWDP163fs
BLCA	TCGA-BT-A3PH-01	MSL1	ENST00000583127.1,ENST00000579565.1,ENST00000339569.5,ENST00000578648.1,ENST00000398532.4	chr17	38289294:38289362:38289786:38289911:38290079:38290139,	38289787	38289911	38289813	38289822	Frame_Shift_Del	AAAGAATTTT	-	p.QRIL528fs
BLCA	TCGA-BT-A3PJ-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937042	48937043	Frame_Shift_Ins	-	A	p.T271fs
BLCA	TCGA-BT-A3PK-01	TBC1D9B	ENST00000356834.3	chr5	179292837:179292888:179294444:179294495:179294777:179294849,	179294445	179294495	179294465	179294465	Frame_Shift_Del	A	-	p.F965fs
BLCA	TCGA-BT-A3PK-01	ARHGAP44	ENST00000340825.3,ENST00000379672.5	chr17	12883424:12883550:12887847:12888225:12893348:12893901,	12887848	12888225	12888211	12888211	Frame_Shift_Del	A	-	p.E768fs
BLCA	TCGA-BT-A42B-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1275923:1276110:1276270:1276496:1276612:1276788,	1276271	1276496	1276413	1276414	Frame_Shift_Ins	-	G	p.A5273fs
BLCA	TCGA-BT-A42B-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420990	49421006	Frame_Shift_Del	GGGGAAGGGGGCGGGGA	-	p.SPPPSP4915fs
BLCA	TCGA-BT-A42C-01	TSC1	ENST00000545250.1	chr9	135800973:135801126:135802587:135802691:135804153:135804339,135798734:135798879:135802587:135802691:135804153:135804339,	135802588	135802691	135802666	135802666	Frame_Shift_Del	G	-	p.T44fs
BLCA	TCGA-BT-A42C-01	RPL23	ENST00000577407.1,ENST00000479035.2,ENST00000245857.5,ENST00000394332.1,ENST00000378096.3,ENST00000470646.1	chr17	37006691:37006728:37008856:37008985:37009274:37009358,	37008857	37008985	37008873	37008892	Frame_Shift_Del	TGGTTTGCCTTTCTTGACTG	-	p.TVKKGKP64fs
BLCA	TCGA-BT-A42C-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41348958:41349123:41352183:41352625:41353702:41353797,	41352184	41352625	41352619	41352619	Frame_Shift_Del	T	-	p.L821fs
BLCA	TCGA-C4-A0EZ-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47619021	47619040	Frame_Shift_Del	AGAAGCTGGGCTCAGCTTGT	-	p.DKLSPAS159fs
BLCA	TCGA-C4-A0F0-01	CSNK1E	ENST00000430335.1,ENST00000359867.3,ENST00000400206.2,ENST00000467976.1,ENST00000396832.1,ENST00000405675.3,ENST00000451964.1,ENST00000413574.2,ENST00000403904.1	chr22	38695960:38696070:38696728:38696957:38698865:38698995,	38696729	38696957	38696882	38696883	Frame_Shift_Del	GC	-	p.L138fs
BLCA	TCGA-C4-A0F1-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82580534	82580534	Frame_Shift_Del	C	-	p.A3124fs
BLCA	TCGA-C4-A0F7-01	RPS3	ENST00000529173.1	chr11	75111735:75111868:75112683:75113490:75115063:75115078,	75112684	75113490	75113378	75113379	Frame_Shift_Ins	-	CCTTGCTT	p.-98fs
BLCA	TCGA-C4-A0F7-01	RPS3	ENST00000278572.6	chr11	75112683:75112777:75113347:75113490:75115063:75115074,	75113348	75113490	75113378	75113379	Frame_Shift_Ins	-	CCTTGCTT	p.-98fs
BLCA	TCGA-CF-A1HS-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
BLCA	TCGA-CF-A1HS-01	GHDC	ENST00000587427.1,ENST00000593209.1,ENST00000301671.8,ENST00000428494.2	chr17	40342202:40342288:40342641:40342775:40342849:40342921,	40342642	40342775	40342704	40342704	Frame_Shift_Del	G	-	p.A409fs
BLCA	TCGA-CF-A27C-01	RASIP1	ENST00000222145.4	chr19	49230649:49230687:49232193:49232847:49238452:49238808,	49232194	49232847	49232663	49232663	Frame_Shift_Del	C	-	p.G455fs
BLCA	TCGA-CF-A3MF-01	TAF1C	ENST00000544090.1,ENST00000341690.6	chr16	84212727:84213457:84213551:84213686:84213775:84213934,	84213552	84213686	84213650	84213651	Frame_Shift_Ins	-	G	p.Q534fs
BLCA	TCGA-CF-A3MF-01	TAF1C	ENST00000570117.1,ENST00000566732.1,ENST00000564774.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000564208.1	chr16	84212727:84213457:84213551:84213689:84213775:84213934,	84213552	84213689	84213650	84213651	Frame_Shift_Ins	-	G	p.Q534fs
BLCA	TCGA-CF-A3MH-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831730	2831731	Frame_Shift_Ins	-	C	p.DP366fs
BLCA	TCGA-CF-A3MI-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
BLCA	TCGA-CF-A47S-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000389980.3	chr2	54826228:54826380:54839297:54839471:54843343:54843435,	54839298	54839471	54839354	54839357	Frame_Shift_Del	CCTT	-	p.AL106fs
BLCA	TCGA-CF-A47S-01	ACTB	ENST00000477812.1	chr7	5568323:5568350:5568791:5569294:5570154:5570235,	5568792	5569294	5568826	5568827	Frame_Shift_Ins	-	G	p.L110fs
BLCA	TCGA-CF-A47S-01	CTBP2	ENST00000395705.2,ENST00000411419.2,ENST00000309035.6,ENST00000494626.2,ENST00000531469.1,ENST00000334808.6,ENST00000337195.5	chr10	126681835:126681898:126682423:126682554:126683037:126683175,	126682424	126682554	126682434	126682437	Frame_Shift_Del	CTGA	-	p.SE840fs
BLCA	TCGA-CF-A47S-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344887	33344888	Frame_Shift_Ins	-	A	p.PK1387fs
BLCA	TCGA-CF-A47W-01	SGIP1	ENST00000237247.6	chr1	67098752:67098777:67099762:67099846:67105459:67105516,	67099763	67099846	67099769	67099769	Frame_Shift_Del	A	-	p.K38fs
BLCA	TCGA-CF-A47X-01	SOS1	ENST00000426016.1,ENST00000402219.2	chr2	39214613:39214732:39222263:39222528:39224062:39224179,39216410:39216455:39222263:39222528:39224062:39224179,	39222264	39222528	39222399	39222399	Frame_Shift_Del	T	-	p.S1071fs
BLCA	TCGA-CF-A47X-01	SEC24B	ENST00000265175.5,ENST00000399100.2	chr4	110354970:110355158:110384056:110384800:110394159:110394342,	110384057	110384800	110384059	110384059	Frame_Shift_Del	C	-	p.P46fs
BLCA	TCGA-CF-A47X-01	HK1	ENST00000494253.1,ENST00000360289.2,ENST00000404387.2,ENST00000448642.2,ENST00000298649.3,ENST00000359426.6	chr10	71139617:71139851:71142242:71142547:71144088:71144237,	71142243	71142547	71142268	71142269	Frame_Shift_Ins	-	TT	p.L466fs
BLCA	TCGA-CF-A47X-01	PIBF1	ENST00000326291.6	chr13	73428194:73428293:73467921:73468087:73482668:73482819,	73467922	73468087	73468075	73468076	Frame_Shift_Ins	-	A	p.K493fs
BLCA	TCGA-CF-A5U8-01	SERPINF1	ENST00000570731.1	chr17	1665361:1665407:1670196:1670288:1673145:1673322,1666122:1666177:1670196:1670288:1673145:1673322,	1670197	1670288	1670235	1670235	Frame_Shift_Del	G	-	p.G11fs
BLCA	TCGA-CF-A5U8-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123215229:123215378:123217270:123217399:123220396:123220620,	123217271	123217399	123217301	123217302	Frame_Shift_Del	TA	-	p.N986fs
BLCA	TCGA-CF-A9FL-01	ERGIC2	ENST00000360150.4,ENST00000546839.1	chr12	29502945:29503001:29509314:29509410:29510555:29510601,	29509315	29509410	29509323	29509323	Frame_Shift_Del	T	-	p.T188fs
BLCA	TCGA-CF-A9FL-01	CREBBP	ENST00000572134.1,ENST00000262367.5,ENST00000382070.3	chr16	3828011:3828183:3828700:3828818:3830732:3830868,	3828701	3828818	3828757	3828778	Frame_Shift_Del	GGTTTTCCATGCGGCGATCCTT	-	p.KDRRMENL622fs
BLCA	TCGA-CF-A9FM-01	APOB	ENST00000233242.1,ENST00000399256.4	chr2	21259971:21260127:21260829:21260983:21263809:21263955,	21260830	21260983	21260839	21260840	Frame_Shift_Ins	-	A	p.V176fs
BLCA	TCGA-CF-A9FM-01	RSPH4A	ENST00000229554.5	chr6	116948791:116949532:116950729:116950865:116951597:116951715,	116950730	116950865	116950757	116950758	Frame_Shift_Ins	-	A	p.Q564fs
BLCA	TCGA-CF-A9FM-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
BLCA	TCGA-CF-A9FM-01	IREB2	ENST00000258886.8,ENST00000558570.1	chr15	78782763:78782868:78782960:78783103:78786250:78786398,	78782961	78783103	78783054	78783054	Frame_Shift_Del	G	-	p.G759fs
BLCA	TCGA-CU-A0YN-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618994	618994	Frame_Shift_Del	G	-	p.P522fs
BLCA	TCGA-CU-A0YO-01	GIGYF1	ENST00000275732.5	chr7	100279944:100280105:100280212:100280400:100280634:100280853,	100280213	100280400	100280314	100280315	Frame_Shift_Ins	-	C	p.G833fs
BLCA	TCGA-CU-A0YR-01	XPR1	ENST00000367590.4,ENST00000367589.3	chr1	180832899:180833010:180842938:180843078:180849211:180849433,	180842939	180843078	180843056	180843056	Frame_Shift_Del	T	-	p.F596fs
BLCA	TCGA-CU-A0YR-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2,ENST00000415489.1	chr2	55894125:55894228:55894996:55895093:55898453:55898503,	55894997	55895093	55895089	55895089	Frame_Shift_Del	T	-	p.K327fs
BLCA	TCGA-CU-A0YR-01	CPA2	ENST00000222481.4	chr7	129917665:129917756:129919302:129919502:129921943:129922028,	129919303	129919502	129919306	129919318	Frame_Shift_Del	CTGGAGCCAGCAG	-	p.PGASS264fs
BLCA	TCGA-CU-A0YR-01	RALGDS	ENST00000372062.3,ENST00000393160.3,ENST00000424572.1,ENST00000372047.3,ENST00000372050.3,ENST00000469972.1,ENST00000542690.1,ENST00000493438.1,ENST00000393157.3,ENST00000482648.1	chr9	135977324:135977526:135977862:135977958:135978165:135978287,	135977863	135977958	135977871	135977872	Frame_Shift_Ins	-	CGCT	p.-612fs
BLCA	TCGA-CU-A0YR-01	ME2	ENST00000382927.3,ENST00000321341.5	chr18	48447443:48447557:48450467:48450582:48452125:48452268,	48450468	48450582	48450474	48450480	Frame_Shift_Del	AAAGCAA	-	p.KAK355fs
BLCA	TCGA-CU-A3KJ-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806620	33806620	Frame_Shift_Del	A	-	p.F203fs
BLCA	TCGA-CU-A3YL-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980282	201980282	Frame_Shift_Del	G	-	p.E6fs
BLCA	TCGA-CU-A3YL-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980282	201980282	Frame_Shift_Del	G	-	p.E6fs
BLCA	TCGA-CU-A3YL-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539870	187539870	Frame_Shift_Del	C	-	p.D2624fs
BLCA	TCGA-CU-A5W6-01	RARG	ENST00000425354.2,ENST00000548317.1,ENST00000338561.5,ENST00000327550.3,ENST00000543726.1,ENST00000550265.1,ENST00000394426.1,ENST00000543762.1	chr12	53607877:53608019:53608229:53608390:53609076:53609136,	53608230	53608390	53608320	53608321	Frame_Shift_Ins	-	A	p.L182fs
BLCA	TCGA-CU-A72E-01	FKBP15	ENST00000446284.1,ENST00000414250.1,ENST00000238256.3	chr9	115952750:115952858:115955771:115955829:115956306:115956449,	115955772	115955829	115955776	115955776	Frame_Shift_Del	T	-	p.N354fs
BLCA	TCGA-DK-A1A3-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2,ENST00000487682.1	chr1	156911163:156911225:156911655:156911781:156912481:156912572,	156911656	156911781	156911698	156911698	Frame_Shift_Del	G	-	p.P1137fs
BLCA	TCGA-DK-A1A3-01	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682419	108682419	Frame_Shift_Del	T	-	p.I881fs
BLCA	TCGA-DK-A1A3-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920933	57920934	Frame_Shift_Ins	-	C	p.A669fs
BLCA	TCGA-DK-A1A3-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10599867:10600044:10602252:10602396,10597393:10597494:10599867:10600044:10600323:10600529,	10599868	10600044	10599968	10599969	Frame_Shift_Ins	-	CA	p.R536fs
BLCA	TCGA-DK-A1A5-01	BAZ2A	ENST00000551812.1,ENST00000549884.1	chr12	57007736:57007922:57008797:57009391:57011178:57011316,	57008798	57009391	57009177	57009178	Frame_Shift_Ins	-	C	p.G117fs
BLCA	TCGA-DK-A1A6-06	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	280163	280163	Frame_Shift_Del	C	-	p.I143fs
BLCA	TCGA-DK-A1A6-06	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579316	Frame_Shift_Ins	-	C	p.C124fs
BLCA	TCGA-DK-A1A6-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579316	Frame_Shift_Ins	-	C	p.C124fs
BLCA	TCGA-DK-A1A7-01	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027759	40027772	Frame_Shift_Del	AGGAGCCAAGGAGA	-	p.GAKEK592fs
BLCA	TCGA-DK-A1AA-01	GPM6A	ENST00000506894.1	chr4	176594904:176594987:176622725:176622918:176733341:176733400,176594904:176594987:176622725:176622918:176923459:176923483,	176622726	176622918	176622885	176622885	Frame_Shift_Del	C	-	p.G24fs
BLCA	TCGA-DK-A1AA-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123210181:123210321:123211806:123211908:123215229:123215378,	123211807	123211908	123211880	123211881	Frame_Shift_Ins	-	T	p.K917fs
BLCA	TCGA-DK-A1AC-01	PIGK	ENST00000370813.5,ENST00000370812.3,ENST00000487906.1,ENST00000445065.1	chr1	77557886:77558175:77587959:77588044:77620133:77620306,	77587960	77588044	77588010	77588010	Frame_Shift_Del	C	-	p.E341fs
BLCA	TCGA-DK-A1AC-01	AMOTL2	ENST00000506326.1,ENST00000249883.5	chr3	134076392:134076605:134077381:134077561:134078124:134078345,	134077382	134077561	134077396	134077397	Frame_Shift_Ins	-	T	p.R814fs
BLCA	TCGA-DK-A1AC-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000513145.1	chr3	134076392:134076605:134077381:134077558:134078124:134078345,	134077382	134077558	134077396	134077397	Frame_Shift_Ins	-	T	p.R814fs
BLCA	TCGA-DK-A1AC-01	COPS4	ENST00000509093.1,ENST00000503682.1,ENST00000509317.1,ENST00000511653.1,ENST00000264389.2	chr4	83978078:83978232:83978410:83978561:83984228:83984399,	83978411	83978561	83978470	83978477	Frame_Shift_Del	CAATGAGC	-	p.NEL209fs
BLCA	TCGA-DK-A1AC-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000473533.2,ENST00000460168.1,ENST00000395187.2,ENST00000412272.2	chr10	69726439:69726559:69748419:69748592:69749967:69749998,	69748420	69748592	69748513	69748513	Frame_Shift_Del	C	-	p.L571fs
BLCA	TCGA-DK-A1AC-01	RBBP8	ENST00000399722.2,ENST00000327155.5,ENST00000360790.5	chr18	20581548:20581692:20596790:20596887:20602091:20602233,20586325:20586395:20596790:20596887:20602091:20602233,	20596791	20596887	20596832	20596833	Frame_Shift_Ins	-	C	p.K801fs
BLCA	TCGA-DK-A1AC-01	CC2D1A	ENST00000587508.1,ENST00000589606.1,ENST00000586955.1,ENST00000318003.7	chr19	14037790:14037890:14037987:14038078:14038705:14038843,	14037988	14038078	14037992	14037992	Frame_Shift_Del	C	-	p.L744fs
BLCA	TCGA-DK-A1AD-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72409874:72409948:72410385:72410507:72410952:72411055,	72410386	72410507	72410394	72410395	Frame_Shift_Del	AC	-	p.T220fs
BLCA	TCGA-DK-A1AD-01	AGO2	ENST00000523609.1,ENST00000520412.1,ENST00000220592.5	chr8	141545566:141545668:141549418:141549553:141551262:141551457,	141549419	141549553	141549532	141549532	Frame_Shift_Del	C	-	p.A686fs
BLCA	TCGA-DK-A1AE-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58616959:58617086:58619241:58619410:58620448:58620652,	58619242	58619410	58619315	58619316	Frame_Shift_Del	CT	-	p.GG244fs
BLCA	TCGA-DK-A1AE-01	DOCK6	ENST00000294618.7	chr19	11348720:11348791:11348862:11348980:11352720:11352883,	11348863	11348980	11348960	11348960	Frame_Shift_Del	G	-	p.P555fs
BLCA	TCGA-DK-A1AF-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938507	44938507	Frame_Shift_Del	A	-	p.K1019fs
BLCA	TCGA-DK-A1AG-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000397519.2	chr9	15478474:15478550:15479588:15479685:15486003:15486066,	15479589	15479685	15479597	15479609	Frame_Shift_Del	CGTCCTCTTTTAG	-	p.PKRGR178fs
BLCA	TCGA-DK-A2HX-01	PHF7	ENST00000498509.2	chr3	52455031:52455078:52455663:52456897:52457106:52457299,	52455664	52456897	52456270	52456291	Frame_Shift_Del	TCTCAGACTTATATCAGCGCTA	-	p.FSDLYQRY238fs
BLCA	TCGA-DK-A2HX-01	PHF7	ENST00000461861.1,ENST00000327906.3	chr3	52455663:52455770:52456237:52456354:52456775:52456852,	52456238	52456354	52456270	52456291	Frame_Shift_Del	TCTCAGACTTATATCAGCGCTA	-	p.FSDLYQRY238fs
BLCA	TCGA-DK-A3IL-01	GRHL3	ENST00000342072.4,ENST00000236255.4,ENST00000361548.4,ENST00000356046.2,ENST00000350501.5,ENST00000528064.1	chr1	24661134:24661196:24662971:24663317:24663567:24663641,	24662972	24663317	24663111	24663112	Frame_Shift_Ins	-	A	p.E136fs
BLCA	TCGA-DK-A3IL-01	KDM3B	ENST00000314358.5	chr5	137717204:137717279:137721710:137722310:137726701:137727950,	137721711	137722310	137722024	137722028	Frame_Shift_Del	GGACT	-	p.RT365fs
BLCA	TCGA-DK-A3IL-01	KDM3B	ENST00000510866.1,ENST00000394866.1	chr5	137721864:137721879:137721977:137722310:137726701:137727950,	137721978	137722310	137722024	137722028	Frame_Shift_Del	GGACT	-	p.RT365fs
BLCA	TCGA-DK-A3IL-01	NTRK2	ENST00000376208.1,ENST00000376213.1,ENST00000395866.2,ENST00000323115.4,ENST00000395882.1,ENST00000304053.6,ENST00000376214.1,ENST00000359847.3,ENST00000277120.3	chr9	87342607:87342874:87356806:87356842:87359887:87359988,	87356807	87356842	87356831	87356837	Frame_Shift_Del	TAATTTA	-	p.VIY395fs
BLCA	TCGA-DK-A3IM-01	KRBA1	ENST00000496259.1,ENST00000485033.2,ENST00000319551.8	chr7	149426306:149426460:149427236:149427431:149427517:149427635,149425613:149425766:149427236:149427431:149427517:149427658,	149427237	149427431	149427255	149427255	Frame_Shift_Del	C	-	p.S609fs
BLCA	TCGA-DK-A3IN-01	UROD	ENST00000491300.1,ENST00000486699.1,ENST00000460334.1,ENST00000473012.1	chr1	45478963:45479026:45479246:45479463:45479580:45479628,	45479247	45479463	45479331	45479332	Frame_Shift_Del	AG	-	p.EE114fs
BLCA	TCGA-DK-A3IN-01	UROD	ENST00000490385.1,ENST00000494399.1,ENST00000246337.4,ENST00000478467.1,ENST00000491773.1,ENST00000462688.1,ENST00000469548.1	chr1	45478963:45479026:45479265:45479463:45479580:45479628,	45479266	45479463	45479331	45479332	Frame_Shift_Del	AG	-	p.EE114fs
BLCA	TCGA-DK-A3IN-01	KIFC1	ENST00000428849.2	chr6	33371505:33371906:33372628:33373408:33373972:33374141,	33372629	33373408	33372709	33372709	Frame_Shift_Del	G	-	p.Q279fs
BLCA	TCGA-DK-A3IQ-01	FAT1	ENST00000441802.2	chr4	187557178:187557389:187557738:187558068:187560875:187560937,	187557739	187558068	187557747	187557747	Frame_Shift_Del	T	-	p.I1322fs
BLCA	TCGA-DK-A3IQ-01	RHOBTB3	ENST00000510313.1,ENST00000379982.3,ENST00000504179.1	chr5	95103843:95103870:95115955:95116129:95119500:95119573,	95115956	95116129	95116086	95116086	Frame_Shift_Del	C	-	p.F471fs
BLCA	TCGA-DK-A3IS-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
BLCA	TCGA-DK-A3IS-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
BLCA	TCGA-DK-A3IT-01	USP4	ENST00000416417.1,ENST00000491791.1,ENST00000415188.1,ENST00000265560.4,ENST00000464168.1,ENST00000351842.4	chr3	49362136:49362196:49362326:49362472:49363151:49363278,	49362327	49362472	49362440	49362441	Frame_Shift_Ins	-	A	p.N174fs
BLCA	TCGA-DK-A3IU-01	ITGA6	ENST00000375221.2,ENST00000442250.1,ENST00000264106.6	chr2	173333852:173334108:173337501:173337618:173338782:173338840,173335701:173335833:173337501:173337618:173338782:173338840,	173337502	173337618	173337614	173337614	Frame_Shift_Del	C	-	p.Y296fs
BLCA	TCGA-DK-A3IU-01	UBE2K	ENST00000438068.2,ENST00000513231.1,ENST00000503368.1,ENST00000261427.5,ENST00000510719.1	chr4	39776453:39776553:39779301:39779430:39779979:39780004,	39779302	39779430	39779392	39779392	Frame_Shift_Del	A	-	p.K165fs
BLCA	TCGA-DK-A3WW-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910640	29910640	Frame_Shift_Del	C	-	p.F60fs
BLCA	TCGA-DK-A3WW-01	ARFGEF1	ENST00000520381.1,ENST00000262215.3	chr8	68145089:68145180:68150577:68150728:68150969:68151128,	68150578	68150728	68150658	68150658	Frame_Shift_Del	G	-	p.S1070fs
BLCA	TCGA-DK-A3WW-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348573	89348573	Frame_Shift_Del	C	-	p.K1461fs
BLCA	TCGA-DK-A3X2-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406718	91406719	Frame_Shift_Ins	-	T	p.S65fs
BLCA	TCGA-DK-A3X2-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123164810:123164975:123171376:123171473:123176418:123176495,	123171377	123171473	123171389	123171390	Frame_Shift_Del	GA	-	p.D101fs
BLCA	TCGA-DK-A6AV-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17884423:17884559:17888485:17888646:17889905:17890020,	17888486	17888646	17888586	17888586	Frame_Shift_Del	C	-	p.A636fs
BLCA	TCGA-DK-A6AW-01	IFI44L	ENST00000486882.1,ENST00000476521.1,ENST00000342282.3,ENST00000370751.5,ENST00000476876.1,ENST00000494910.1	chr1	79102784:79102888:79106705:79106806:79107119:79107170,	79106706	79106806	79106767	79106768	Frame_Shift_Ins	-	T	p.F371fs
BLCA	TCGA-DK-A6AW-01	CTSK	ENST00000271651.3,ENST00000443913.1	chr1	150778336:150778492:150778577:150778700:150779161:150779244,	150778578	150778700	150778662	150778663	Frame_Shift_Ins	-	T	p.N53fs
BLCA	TCGA-DK-A6AW-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195451761	195451762	Frame_Shift_Ins	-	A	p.TK96fs
BLCA	TCGA-DK-A6AW-01	HNRNPAB	ENST00000514633.1,ENST00000355836.5,ENST00000506259.1,ENST00000515193.1,ENST00000504898.1,ENST00000506339.1,ENST00000358344.3	chr5	177631815:177632047:177632842:177633011:177633732:177633867,	177632843	177633011	177632994	177632995	Frame_Shift_Ins	-	CAGC	p.A121fs
BLCA	TCGA-DK-A6AW-01	PRRT1	ENST00000211413.5	chr6	32117313:32117499:32118144:32118683:32119585:32119676,	32118145	32118683	32118376	32118376	Frame_Shift_Del	G	-	p.P109fs
BLCA	TCGA-DK-A6AW-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508369	71508370	Frame_Shift_Ins	-	A	p.E169fs
BLCA	TCGA-DK-A6AW-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92471390	92471391	Frame_Shift_Ins	-	T	p.T977fs
BLCA	TCGA-DK-A6AW-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
BLCA	TCGA-DK-A6AW-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060586	56060587	Frame_Shift_Ins	-	T	p.E59fs
BLCA	TCGA-DK-A6B0-01	TOR2A	ENST00000496460.1,ENST00000373284.5	chr9	130494190:130494557:130494842:130494970:130495663:130495839,	130494843	130494970	130494894	130494894	Frame_Shift_Del	G	-	p.L224fs
BLCA	TCGA-DK-A6B1-01	TNFRSF10C	ENST00000356864.3	chr8	22960433:22960694:22969232:22969338:22972169:22972283,	22969233	22969338	22969274	22969275	Frame_Shift_Ins	-	C	p.P35fs
BLCA	TCGA-DK-A6B1-01	CEP192	ENST00000507254.2,ENST00000511820.2,ENST00000589993.1,ENST00000510237.1,ENST00000506447.1,ENST00000513432.1,ENST00000430049.2,ENST00000325971.8	chr18	13087147:13087276:13087529:13087645:13089454:13089564,	13087530	13087645	13087586	13087587	Frame_Shift_Del	AG	-	p.E1979fs
BLCA	TCGA-DK-A6B2-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831368	61831368	Frame_Shift_Del	T	-	p.T3091fs
BLCA	TCGA-DK-A6B2-01	LOXL4	ENST00000260702.3	chr10	100018765:100018985:100019147:100019186:100020678:100020884,	100019148	100019186	100019161	100019161	Frame_Shift_Del	C	-	p.D230fs
BLCA	TCGA-DK-A6B2-01	MARK2	ENST00000513765.2,ENST00000502399.3,ENST00000377809.4,ENST00000509502.2,ENST00000402010.2,ENST00000315032.8	chr11	63670532:63670630:63671457:63671619:63672257:63672393,	63671458	63671619	63671582	63671582	Frame_Shift_Del	C	-	p.P548fs
BLCA	TCGA-DK-A6B5-01	HSPG2	ENST00000374695.3	chr1	22188480:22188608:22190592:22190706:22191335:22191566,	22190593	22190706	22190636	22190636	Frame_Shift_Del	T	-	p.N1566fs
BLCA	TCGA-DK-A6B6-01	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142037631:142037745:142048275:142048457:142051216:142051266,	142048276	142048457	142048294	142048294	Frame_Shift_Del	G	-	p.S1461fs
BLCA	TCGA-DK-A6B6-01	NECAP1	ENST00000450991.2	chr12	8242790:8242895:8245271:8245380:8245467:8245651,	8245272	8245380	8245310	8245314	Frame_Shift_Del	AAGAA	-	p.QE141fs
BLCA	TCGA-DK-A6B6-01	DOCK9	ENST00000449796.1,ENST00000448493.2,ENST00000339416.2,ENST00000472874.1,ENST00000376460.1	chr13	99500845:99500893:99502300:99502367:99505661:99505776,	99502301	99502367	99502312	99502312	Frame_Shift_Del	A	-	p.F1334fs
BLCA	TCGA-DK-A6B6-01	LCMT1	ENST00000577157.1,ENST00000570981.1,ENST00000380962.5,ENST00000399069.3,ENST00000380966.4	chr16	25139795:25139887:25143722:25143844:25151491:25151568,	25143723	25143844	25143746	25143746	Frame_Shift_Del	G	-	p.V77fs
BLCA	TCGA-DK-AA6P-01	SRSF3	ENST00000477442.2	chr6	36566625:36566760:36567597:36568053:36568928:36568967,	36567598	36568053	36567603	36567603	Frame_Shift_Del	C	-	p.T116fs
BLCA	TCGA-DK-AA6P-01	TM9SF4	ENST00000398022.2,ENST00000217315.5	chr20	30729343:30729468:30729568:30729698:30730784:30730880,	30729569	30729698	30729605	30729618	Frame_Shift_Del	GCTCTACTCCAACC	-	p.LYSNR129fs
BLCA	TCGA-DK-AA6P-01	CHEK2	ENST00000439200.1,ENST00000382580.2	chr22	29121230:29121355:29130390:29130715:29137756:29137771,29126443:29126536:29130390:29130715:29137756:29137771,	29130391	29130715	29130581	29130582	Frame_Shift_Del	GG	-	p.T43fs
BLCA	TCGA-DK-AA6Q-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971048	21971058	Frame_Shift_Del	GCCGCGCCCCG	-	p.RGAA115fs
BLCA	TCGA-DK-AA6Q-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971048	21971058	Frame_Shift_Del	GCCGCGCCCCG	-	p.RGAA115fs
BLCA	TCGA-DK-AA6Q-01	EHMT1	ENST00000334856.6,ENST00000460843.1	chr9	140513464:140513501:140605418:140605482:140611077:140611502,	140605419	140605482	140605432	140605432	Frame_Shift_Del	G	-	p.R12fs
BLCA	TCGA-DK-AA6R-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103736	168103736	Frame_Shift_Del	T	-	p.I1945fs
BLCA	TCGA-DK-AA6R-01	SRGAP3	ENST00000383836.3	chr3	9069783:9069814:9074333:9074436:9079746:9079774,9068618:9068679:9074333:9074436:9079746:9079774,	9074334	9074436	9074399	9074399	Frame_Shift_Del	T	-	p.R492fs
BLCA	TCGA-DK-AA6S-01	POLR1B	ENST00000541869.1,ENST00000484574.1,ENST00000537335.1,ENST00000333990.6,ENST00000448770.1,ENST00000263331.5,ENST00000417433.2	chr2	113321942:113322076:113325543:113325714:113326322:113326479,	113325544	113325714	113325601	113325602	Frame_Shift_Ins	-	C	p.G602fs
BLCA	TCGA-DK-AA6S-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545734	196545734	Frame_Shift_Del	C	-	p.S323fs
BLCA	TCGA-DK-AA6S-01	ESRP2	ENST00000251366.3,ENST00000473183.2,ENST00000565858.1	chr16	68264291:68264457:68264743:68264930:68265080:68265279,	68264744	68264930	68264854	68264854	Frame_Shift_Del	G	-	p.P596fs
BLCA	TCGA-DK-AA6U-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548141	165548141	Frame_Shift_Del	T	-	p.A227fs
BLCA	TCGA-DK-AA6U-01	MIER3	ENST00000452157.1,ENST00000381199.3,ENST00000381213.3,ENST00000381226.3,ENST00000409421.1	chr5	56218410:56219412:56219517:56219660:56219741:56219869,	56219518	56219660	56219568	56219568	Frame_Shift_Del	G	-	p.P387fs
BLCA	TCGA-DK-AA6U-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000560764.1,ENST00000537840.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57524909:57525054:57526240:57526305:57535669:57535713,	57526241	57526305	57526295	57526296	Frame_Shift_Ins	-	T	p.L343fs
BLCA	TCGA-DK-AA6U-01	CCDC33	ENST00000558659.1,ENST00000268082.4,ENST00000321288.5	chr15	74625019:74625186:74625561:74625663:74626221:74626308,	74625562	74625663	74625627	74625627	Frame_Shift_Del	A	-	p.P871fs
BLCA	TCGA-DK-AA6W-01	GMPS	ENST00000496455.2,ENST00000295920.7	chr3	155632207:155632359:155633807:155633981:155637021:155637127,	155633808	155633981	155633812	155633812	Frame_Shift_Del	C	-	p.A348fs
BLCA	TCGA-DK-AA6W-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578213	Frame_Shift_Del	A	-	p.F212fs
BLCA	TCGA-DK-AA75-01	SEMA3F	ENST00000413852.1,ENST00000002829.3,ENST00000434342.1	chr3	50223098:50223140:50223321:50223479:50223713:50223781,	50223322	50223479	50223330	50223355	Frame_Shift_Del	CTACGTGGCGTCAGCCGTGGGTGTCA	-	p.YVASAVGVT533fs
BLCA	TCGA-DK-AA76-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088787	27088788	Frame_Shift_Ins	-	GG	p.QG799fs
BLCA	TCGA-DK-AA76-01	ATG4B	ENST00000494465.1,ENST00000482507.1,ENST00000404914.3,ENST00000474739.2,ENST00000475693.1,ENST00000396411.3,ENST00000428861.1,ENST00000344376.5,ENST00000405546.3,ENST00000402096.1,ENST00000460211.1	chr2	242607954:242608100:242610140:242610197:242610726:242610781,	242610141	242610197	242610144	242610144	Frame_Shift_Del	T	-	p.F322fs
BLCA	TCGA-DK-AA76-01	PPP2R5C	ENST00000445439.3,ENST00000334743.5,ENST00000328724.5,ENST00000557268.1,ENST00000561006.1,ENST00000350249.3,ENST00000422945.2	chr14	102368193:102368226:102372738:102372866:102375925:102376027,	102372739	102372866	102372770	102372777	Frame_Shift_Del	ATGAATAC	-	p.NEY383fs
BLCA	TCGA-DK-AA77-01	KIAA0586	ENST00000556134.1,ENST00000261244.5,ENST00000423743.3	chr14	58979239:58979345:59006788:59006854:59010600:59010685,58979239:58979345:59006788:59006854:59014498:59014741,	59006789	59006854	59006827	59006827	Frame_Shift_Del	A	-	p.N1446fs
BLCA	TCGA-E5-A2PC-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
BLCA	TCGA-E5-A2PC-01	ABCC8	ENST00000526921.1,ENST00000389817.3,ENST00000302539.4,ENST00000529967.1	chr11	17428434:17428676:17428900:17429000:17429938:17430064,	17428901	17429000	17428979	17428979	Frame_Shift_Del	C	-	p.A949fs
BLCA	TCGA-E5-A4TZ-01	SMYD2	ENST00000471645.1	chr1	214503510:214503621:214504292:214507651:214510046:214510177,	214504293	214507651	214507617	214507617	Frame_Shift_Del	A	-	p.E396fs
BLCA	TCGA-E5-A4TZ-01	SMYD2	ENST00000366957.5,ENST00000460580.1	chr1	214503510:214503621:214507542:214507651:214510046:214510177,214505360:214505535:214507542:214507651:214510046:214510177,	214507543	214507651	214507617	214507617	Frame_Shift_Del	A	-	p.E396fs
BLCA	TCGA-E5-A4TZ-01	ITM2B	ENST00000378565.5	chr13	48832261:48832372:48832932:48833083:48835274:48835524,	48832933	48833083	48833016	48833019	Frame_Shift_Del	TTTC	-	p.GF216fs
BLCA	TCGA-E5-A4U1-01	GPM6A	ENST00000506894.1	chr4	176594904:176594987:176622725:176622918:176733341:176733400,176594904:176594987:176622725:176622918:176923459:176923483,	176622726	176622918	176622891	176622891	Frame_Shift_Del	A	-	p.L22fs
BLCA	TCGA-E5-A4U1-01	DCTN4	ENST00000518015.1,ENST00000447998.2,ENST00000521728.1,ENST00000519313.1,ENST00000424236.1	chr5	150111015:150111051:150112929:150113037:150121675:150121719,	150112930	150113037	150112943	150112943	Frame_Shift_Del	G	-	p.P175fs
BLCA	TCGA-E5-A4U1-01	SLCO1A2	ENST00000537524.1,ENST00000544290.1	chr12	21467597:21467615:21471715:21471857:21487521:21487605,21459847:21459922:21471715:21471857:21487521:21487605,	21471716	21471857	21471747	21471747	Frame_Shift_Del	T	-	p.L57fs
BLCA	TCGA-E5-A4U1-01	ATP2A2	ENST00000308664.6,ENST00000539276.2,ENST00000548169.2,ENST00000395494.2,ENST00000377685.5	chr12	110777085:110777208:110777307:110777526:110778463:110778799,	110777308	110777526	110777366	110777366	Frame_Shift_Del	T	-	p.V507fs
BLCA	TCGA-E7-A3Y1-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236492	42236492	Frame_Shift_Del	C	-	p.G279fs
BLCA	TCGA-E7-A3Y1-01	MROH6	ENST00000533679.1	chr8	144650322:144650431:144650721:144650889:144651610:144651784,144649955:144650058:144650721:144650889:144651610:144651784,	144650722	144650889	144650796	144650796	Frame_Shift_Del	G	-	p.L524fs
BLCA	TCGA-E7-A4IJ-01	PPIG	ENST00000417938.2,ENST00000260970.3,ENST00000433207.1,ENST00000462903.1,ENST00000414307.1,ENST00000448752.2	chr2	170463613:170463658:170465180:170465268:170470973:170471003,	170465181	170465268	170465233	170465234	Frame_Shift_Ins	-	AG	p.R115fs
BLCA	TCGA-E7-A4IJ-01	SLC16A8	ENST00000320521.5	chr22	38474140:38474711:38476846:38477686:38477895:38478039,	38476847	38477686	38477211	38477211	Frame_Shift_Del	G	-	p.A278fs
BLCA	TCGA-E7-A4IJ-01	REPS2	ENST00000357277.3	chrX	17040245:17040394:17043181:17043308:17047648:17047746,	17043182	17043308	17043290	17043300	Frame_Shift_Del	GCAGAACAGAT	-	p.AEQM219fs
BLCA	TCGA-E7-A4IJ-01	REPS2	ENST00000380064.4,ENST00000303843.7	chrX	17040245:17040394:17043184:17043308:17047648:17047746,	17043185	17043308	17043290	17043300	Frame_Shift_Del	GCAGAACAGAT	-	p.AEQM219fs
BLCA	TCGA-E7-A4XJ-01	IKZF3	ENST00000351680.3,ENST00000348427.3,ENST00000377945.3,ENST00000439016.2,ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000346243.3,ENST00000467757.1	chr17	37948925:37949186:37985639:37985741:37988350:37988404,	37985640	37985741	37985652	37985653	Frame_Shift_Ins	-	AG	p.E51fs
BLCA	TCGA-E7-A519-01	MARK2	ENST00000361128.5,ENST00000413835.2,ENST00000377810.3,ENST00000408948.3,ENST00000350490.7,ENST00000508192.1	chr11	63670158:63670254:63670532:63670630:63671457:63671619,63670158:63670254:63670532:63670630:63672257:63672515,	63670533	63670630	63670556	63670556	Frame_Shift_Del	A	-	p.T480fs
BLCA	TCGA-E7-A541-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277877	186277878	Frame_Shift_Del	AC	-	p.D1009fs
BLCA	TCGA-E7-A541-01	CNTNAP3B	ENST00000479351.1	chr9	43828077:43828221:43853496:43853616:43861002:43861206,	43853497	43853616	43853584	43853584	Frame_Shift_Del	T	-	p.L615fs
BLCA	TCGA-E7-A541-01	GZF1	ENST00000377051.2,ENST00000542987.1,ENST00000544236.1,ENST00000338121.5	chr20	23349507:23349566:23350220:23350378:23350727:23351058,	23350221	23350378	23350298	23350299	Frame_Shift_Del	CA	-	p.H569fs
BLCA	TCGA-E7-A541-01	LPIN3	ENST00000373257.3	chr20	39980699:39980860:39981245:39981339:39981437:39981507,	39981246	39981339	39981277	39981277	Frame_Shift_Del	G	-	p.Q465fs
BLCA	TCGA-E7-A5KE-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
BLCA	TCGA-E7-A5KF-01	NBPF1	ENST00000420031.2,ENST00000392963.5,ENST00000430580.2	chr1	16894473:16894525:16895567:16895731:16899636:16899688,	16895568	16895731	16895629	16895630	Frame_Shift_Del	AG	-	p.S851fs
BLCA	TCGA-E7-A5KF-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466696	65466696	Frame_Shift_Del	G	-	p.E469fs
BLCA	TCGA-E7-A677-01	CDC42	ENST00000315554.8,ENST00000411827.1,ENST00000344548.3,ENST00000400259.1	chr1	22404921:22405076:22408214:22408287:22412931:22413041,	22408215	22408287	22408257	22408257	Frame_Shift_Del	C	-	p.P50fs
BLCA	TCGA-E7-A677-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630629	158630630	Frame_Shift_Ins	-	T	p.N27fs
BLCA	TCGA-E7-A677-01	ANKRD52	ENST00000548241.1,ENST00000267116.7	chr12	56637021:56637176:56637568:56637660:56637834:56637917,	56637569	56637660	56637599	56637600	Frame_Shift_Ins	-	A	p.G984fs
BLCA	TCGA-E7-A677-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561088	32561091	Frame_Shift_Del	CTGA	-	p.LS405fs
BLCA	TCGA-E7-A6MD-01	LOXL3	ENST00000264094.3,ENST00000470907.2,ENST00000409549.1,ENST00000393937.2,ENST00000409986.1	chr2	74761226:74761363:74761442:74761558:74761657:74761901,	74761443	74761558	74761548	74761555	Frame_Shift_Del	TGTGGTAA	-	p.HYHS609fs
BLCA	TCGA-E7-A6MD-01	IKBKB	ENST00000520201.1,ENST00000517917.1,ENST00000520835.1,ENST00000520655.1,ENST00000517890.1,ENST00000416505.2,ENST00000523105.1,ENST00000521661.1,ENST00000342222.2,ENST00000518647.1,ENST00000520810.1,ENST00000523517.1	chr8	42166418:42166543:42171839:42171947:42173727:42173774,	42171840	42171947	42171858	42171885	Frame_Shift_Del	GAAGAGTGAGGTGGACATTGTTGTTAGC	-	p.QKSEVDIVVS237fs
BLCA	TCGA-E7-A6ME-01	FLT4	ENST00000507059.1,ENST00000261937.6,ENST00000502649.1,ENST00000393347.3,ENST00000514810.1,ENST00000512795.1	chr5	180041085:180041179:180043366:180043489:180043899:180043994,	180043367	180043489	180043369	180043370	Frame_Shift_Ins	-	G	p.S1073fs
BLCA	TCGA-E7-A6ME-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30653405	30653405	Frame_Shift_Del	C	-	p.D131fs
BLCA	TCGA-E7-A7DU-01	EQTN	ENST00000380032.3	chr9	27291016:27291061:27292398:27292485:27294313:27294400,	27292399	27292485	27292453	27292454	Frame_Shift_Ins	-	TT	p.S108fs
BLCA	TCGA-E7-A7XN-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971124	21971125	Frame_Shift_Del	GA	-	p.H93fs
BLCA	TCGA-E7-A7XN-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971124	21971125	Frame_Shift_Del	GA	-	p.H93fs
BLCA	TCGA-E7-A85H-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101128	27101129	Frame_Shift_Ins	-	A	p.N1471fs
BLCA	TCGA-E7-A85H-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237370	33237371	Frame_Shift_Ins	-	GC	p.S864fs
BLCA	TCGA-E7-A85H-01	ELAVL4	ENST00000371821.1,ENST00000371823.4	chr1	50661232:50661458:50663100:50663139:50666522:50667071,50661232:50661458:50663100:50663139:50666480:50667074,	50663101	50663139	50663104	50663105	Frame_Shift_Ins	-	GACAATTT	p.-249fs
BLCA	TCGA-E7-A85H-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153905958:153906347:153906610:153906778:153907235:153907403,	153906611	153906778	153906758	153906758	Frame_Shift_Del	A	-	p.S932fs
BLCA	TCGA-E7-A85H-01	MAPKAPK3	ENST00000357955.2	chr3	50654561:50654672:50654944:50655215:50677796:50677936,50654600:50654657:50654944:50655215:50677796:50677936,	50654945	50655215	50655026	50655032	Frame_Shift_Del	GGGCCCT	-	p.GGP10fs
BLCA	TCGA-E7-A85H-01	SEMA5B	ENST00000451055.2,ENST00000195173.4,ENST00000393583.2,ENST00000475244.1,ENST00000357599.3	chr3	122658271:122658317:122662282:122662382:122667352:122667556,	122662283	122662382	122662289	122662289	Frame_Shift_Del	C	-	p.G141fs
BLCA	TCGA-E7-A85H-01	HLA-DQB1	ENST00000399084.1,ENST00000434651.2,ENST00000374943.4	chr6	32629123:32629234:32629743:32630025:32632574:32632844,	32629744	32630025	32629870	32629870	Frame_Shift_Del	G	-	p.L179fs
BLCA	TCGA-E7-A97P-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000430046.2	chr5	72374006:72374139:72377609:72377809:72378587:72378652,	72377610	72377809	72377796	72377797	Frame_Shift_Del	CC	-	p.P724fs
BLCA	TCGA-E7-A97P-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000503802.1,ENST00000510924.1	chr5	118433673:118433799:118437629:118437701:118440874:118440953,	118437630	118437701	118437645	118437645	Frame_Shift_Del	G	-	p.G77fs
BLCA	TCGA-E7-A97P-01	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50616126	50616145	Frame_Shift_Del	TGGTCTGCTCTGTGCCTAAT	-	p.IRHRADH97fs
BLCA	TCGA-E7-A97Q-01	NMI	ENST00000243346.5	chr2	152126978:152127389:152128139:152128246:152131997:152132184,	152128140	152128246	152128201	152128201	Frame_Shift_Del	T	-	p.N227fs
BLCA	TCGA-E7-A97Q-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577036	7577036	Frame_Shift_Del	G	-	p.P301fs
BLCA	TCGA-E7-A97Q-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44733169:44733233:44820528:44820637:44833910:44833960,	44820529	44820637	44820536	44820536	Frame_Shift_Del	G	-	p.R78fs
BLCA	TCGA-FD-A3B3-01	SLAMF7	ENST00000441662.2	chr1	160720111:160720213:160721134:160721238:160721975:160722036,160719827:160719883:160721134:160721238:160721975:160722036,160717983:160718304:160721134:160721238:160721975:160722036,	160721135	160721238	160721190	160721190	Frame_Shift_Del	C	-	p.C275fs
BLCA	TCGA-FD-A3B3-01	RBFOX1	ENST00000547372.1,ENST00000547605.1,ENST00000551752.1,ENST00000422070.4,ENST00000550418.1,ENST00000355637.4,ENST00000436368.2,ENST00000547338.1,ENST00000311745.5,ENST00000553186.1,ENST00000340209.4	chr16	7637248:7637302:7645550:7645643:7647372:7647433,	7645551	7645643	7645615	7645616	Frame_Shift_Ins	-	CA	p.GT183fs
BLCA	TCGA-FD-A3B3-01	NKAIN4	ENST00000470246.1,ENST00000370316.3,ENST00000466885.1,ENST00000370307.2	chr20	61873079:61873104:61873890:61873975:61875375:61875436,61872741:61872858:61873890:61873975:61875375:61875436,	61873891	61873975	61873940	61873941	Frame_Shift_Del	AG	-	p.Y190fs
BLCA	TCGA-FD-A3B6-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673458	75673459	Frame_Shift_Del	GT	-	p.V191fs
BLCA	TCGA-FD-A3B6-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000434676.2,ENST00000358214.5,ENST00000549926.1,ENST00000547312.1,ENST00000548671.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1,ENST00000551476.1	chr12	32854348:32854496:32861086:32861158:32863862:32863937,32860300:32860347:32861086:32861158:32863862:32863937,	32861087	32861158	32861134	32861135	Frame_Shift_Del	AG	-	p.E116fs
BLCA	TCGA-FD-A3N5-01	MAP3K6	ENST00000493901.1,ENST00000357582.2,ENST00000374040.3	chr1	27682878:27682991:27683080:27683240:27683499:27683605,	27683081	27683240	27683217	27683233	Frame_Shift_Del	GTGAGACCGCCTCCTTC	-	p.EKEAVSP1124fs
BLCA	TCGA-FD-A3N5-01	PDE5A	ENST00000394439.1,ENST00000513594.1,ENST00000512739.1,ENST00000264805.5,ENST00000354960.3	chr4	120442154:120442215:120446703:120446850:120460114:120460174,	120446704	120446850	120446823	120446823	Frame_Shift_Del	G	-	p.L554fs
BLCA	TCGA-FD-A3N5-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15289835:15290093:15290174:15290307:15290882:15291067,	15290175	15290307	15290217	15290223	Frame_Shift_Del	GGTCAAT	-	p.IDL1138fs
BLCA	TCGA-FD-A3N5-01	LAMA5	ENST00000252999.3	chr20	60894739:60894851:60895614:60895725:60895794:60895946,	60895615	60895725	60895697	60895698	Frame_Shift_Ins	-	G	p.R2226fs
BLCA	TCGA-FD-A3N6-01	CCDC120	ENST00000603986.1,ENST00000603906.1,ENST00000422185.2	chrX	48923277:48923376:48924711:48925626:48926079:48926305,	48924712	48925626	48924786	48924786	Frame_Shift_Del	C	-	p.A344fs
BLCA	TCGA-FD-A3NA-01	UACA	ENST00000560523.1,ENST00000379983.2,ENST00000558758.1,ENST00000322954.6,ENST00000560167.1,ENST00000560441.1	chr15	70976695:70976785:70979878:70979985:70980088:70980159,	70979879	70979985	70979935	70979935	Frame_Shift_Del	T	-	p.I182fs
BLCA	TCGA-FD-A3SJ-01	PPP6R3	ENST00000529710.1,ENST00000265636.5	chr11	68326109:68326147:68331770:68331900:68334481:68334634,68326109:68326147:68331770:68331900:68337215:68337365,	68331771	68331900	68331787	68331788	Frame_Shift_Ins	-	A	p.E288fs
BLCA	TCGA-FD-A3SL-01	MTHFD2	ENST00000409601.1	chr2	74425755:74425869:74432831:74433016:74435695:74435848,	74432832	74433016	74432891	74432897	Frame_Shift_Del	GGCAGGA	-	p.RQE54fs
BLCA	TCGA-FD-A3SL-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039151	49039160	Frame_Shift_Del	GATCAAAGAA	-	p.LIKE743fs
BLCA	TCGA-FD-A3SL-01	CORO1A	ENST00000563778.1,ENST00000561815.1,ENST00000219150.5,ENST00000569970.1,ENST00000568763.1,ENST00000565497.1,ENST00000570045.1	chr16	30196529:30196728:30198136:30198266:30198359:30198404,30197918:30198041:30198136:30198266:30198359:30198404,	30198137	30198266	30198259	30198260	Frame_Shift_Ins	-	T	p.S149fs
BLCA	TCGA-FD-A3SL-01	ZNF750	ENST00000572562.1	chr17	80787804:80788753:80788894:80789362:80797802:80797898,	80788895	80789362	80789041	80789042	Frame_Shift_Ins	-	A	p.L430fs
BLCA	TCGA-FD-A3SM-01	TNRC6A	ENST00000491718.1,ENST00000315183.7,ENST00000567232.1,ENST00000395799.3,ENST00000450465.2	chr16	24805864:24806040:24807227:24807260:24808810:24808824,	24807228	24807260	24807240	24807240	Frame_Shift_Del	A	-	p.K1182fs
BLCA	TCGA-FD-A3SN-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056181	27056191	Frame_Shift_Del	CAGCCATATGG	-	p.QPYG393fs
BLCA	TCGA-FD-A3SN-01	IFI44L	ENST00000476521.1	chr1	79101021:79101174:79102784:79102888:79106705:79106806,	79102785	79102888	79102839	79102840	Frame_Shift_Ins	-	A	p.K334fs
BLCA	TCGA-FD-A3SN-01	IFI44L	ENST00000486882.1,ENST00000342282.3,ENST00000370751.5,ENST00000476876.1	chr1	79101021:79101174:79102716:79102888:79106705:79106806,	79102717	79102888	79102839	79102840	Frame_Shift_Ins	-	A	p.K334fs
BLCA	TCGA-FD-A3SN-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204197210:204197356:204197855:204197989:204198064:204198232,	204197856	204197989	204197926	204197926	Frame_Shift_Del	G	-	p.L939fs
BLCA	TCGA-FD-A3SN-01	SYNE3	ENST00000555759.1,ENST00000554873.1,ENST00000557275.1,ENST00000334258.5,ENST00000553340.1	chr14	95910821:95910965:95912245:95912428:95916267:95916442,	95912246	95912428	95912274	95912289	Frame_Shift_Del	CTGTTATGCAGCAGGT	-	p.DLLHNS530fs
BLCA	TCGA-FD-A3SN-01	EPHX3	ENST00000221730.3,ENST00000435261.1,ENST00000602233.1	chr19	15341772:15341901:15342049:15342207:15342586:15342672,	15342050	15342207	15342144	15342157	Frame_Shift_Del	CAAGTCCACAGCCA	-	p.VAVDL127fs
BLCA	TCGA-FD-A3SP-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101322	27101326	Frame_Shift_Del	CAGAT	-	p.TD1535fs
BLCA	TCGA-FD-A3SP-01	SDC1	ENST00000381150.1,ENST00000403076.1	chr2	20403912:20404052:20405103:20405185:20424562:20424847,	20405104	20405185	20405159	20405160	Frame_Shift_Ins	-	G	p.P31fs
BLCA	TCGA-FD-A3SP-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.P782fs
BLCA	TCGA-FD-A3SQ-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000367284.5	chr1	201982309:201982426:201982956:201983152:201984336:201984922,	201982957	201983152	201983027	201983028	Frame_Shift_Ins	-	A	p.M293fs
BLCA	TCGA-FD-A3SQ-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
BLCA	TCGA-FD-A3SR-01	CCDC83	ENST00000526729.1,ENST00000376067.1	chr11	85584273:85584338:85593555:85593718:85606335:85606427,	85593556	85593718	85593685	85593685	Frame_Shift_Del	A	-	p.K104fs
BLCA	TCGA-FD-A3SR-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577104	7577105	Frame_Shift_Ins	-	GGACAGGC	p.-278fs
BLCA	TCGA-FD-A3SS-01	USP33	ENST00000370793.1,ENST00000481579.1,ENST00000370792.3,ENST00000370794.3,ENST00000357428.1	chr1	78178884:78178966:78180298:78180468:78181426:78181553,	78180299	78180468	78180315	78180315	Frame_Shift_Del	A	-	p.F764fs
BLCA	TCGA-FD-A3SS-01	MYLIP	ENST00000349606.4,ENST00000356840.3	chr6	16143250:16143448:16143929:16144094:16145127:16145548,	16143930	16144094	16144013	16144022	Frame_Shift_Del	TCGTGCTCTT	-	p.IVLL68fs
BLCA	TCGA-FD-A43N-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101375	27101375	Frame_Shift_Del	C	-	p.P1554fs
BLCA	TCGA-FD-A43N-01	FYCO1	ENST00000296137.2,ENST00000535325.1	chr3	46011166:46011257:46014579:46014723:46016730:46016837,	46014580	46014723	46014656	46014657	Frame_Shift_Del	AG	-	p.Y155fs
BLCA	TCGA-FD-A43N-01	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248302	141248302	Frame_Shift_Del	G	-	p.S245fs
BLCA	TCGA-FD-A43N-01	BRCC3	ENST00000411985.1,ENST00000369462.1,ENST00000399042.1	chrX	154319058:154319114:154327589:154327664:154344331:154344458,	154327590	154327664	154327649	154327650	Frame_Shift_Del	AG	-	p.Q203fs
BLCA	TCGA-FD-A43U-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
BLCA	TCGA-FD-A43X-01	ACAA1	ENST00000444607.2,ENST00000333167.8,ENST00000301810.7,ENST00000421218.1,ENST00000411549.1	chr3	38173416:38173496:38175442:38175500:38178082:38178115,	38175443	38175500	38175473	38175474	Frame_Shift_Ins	-	C	p.A98fs
BLCA	TCGA-FD-A43X-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.K146fs
BLCA	TCGA-FD-A43X-01	PHTF2	ENST00000454592.1,ENST00000307305.8,ENST00000415251.2,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2,ENST00000450574.1	chr7	77538109:77538275:77539561:77539726:77549595:77549782,	77539562	77539726	77539666	77539690	Frame_Shift_Del	CCTCTCACAGCGTTGGCACTGTCTT	-	p.TSHSVGTVF205fs
BLCA	TCGA-FD-A43X-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000434676.2,ENST00000358214.5,ENST00000549926.1,ENST00000547312.1,ENST00000548671.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1,ENST00000551476.1	chr12	32854348:32854496:32861086:32861158:32863862:32863937,32860300:32860347:32861086:32861158:32863862:32863937,	32861087	32861158	32861134	32861135	Frame_Shift_Del	AG	-	p.E116fs
BLCA	TCGA-FD-A5BR-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1653147	1653162	Frame_Shift_Del	AGGGTGGTGGACACCA	-	p.LVSTTL797fs
BLCA	TCGA-FD-A5BU-01	PCM1	ENST00000519253.1,ENST00000325083.8,ENST00000524226.1	chr8	17817823:17817953:17819542:17819683:17820609:17820800,	17819543	17819683	17819560	17819561	Frame_Shift_Del	GG	-	p.G781fs
BLCA	TCGA-FD-A5BV-01	TIMM17A	ENST00000484647.1,ENST00000478378.1	chr1	201924637:201924680:201926408:201926508:201926638:201926702,	201926409	201926508	201926456	201926456	Frame_Shift_Del	C	-	p.T25fs
BLCA	TCGA-FD-A5BV-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971091	21971092	Frame_Shift_Ins	-	C	p.L104fs
BLCA	TCGA-FD-A5BV-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971091	21971092	Frame_Shift_Ins	-	C	p.L104fs
BLCA	TCGA-FD-A5BY-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799728	39799729	Frame_Shift_Del	GA	-	p.E2490fs
BLCA	TCGA-FD-A5BY-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174270	105174271	Frame_Shift_Ins	-	G	p.R556fs
BLCA	TCGA-FD-A5C0-01	CDH16	ENST00000568698.1,ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66942035:66942392:66943169:66943286:66943888:66943996,	66943170	66943286	66943235	66943235	Frame_Shift_Del	C	-	p.R776fs
BLCA	TCGA-FD-A5C0-01	ESRP2	ENST00000251366.3,ENST00000473183.2,ENST00000565858.1	chr16	68264291:68264457:68264743:68264930:68265080:68265279,	68264744	68264930	68264751	68264752	Frame_Shift_Del	AG	-	p.YY630fs
BLCA	TCGA-FD-A5C1-01	ANAPC1	ENST00000427997.1,ENST00000341068.3	chr2	112576416:112576535:112578815:112579030:112579998:112580177,	112578816	112579030	112578825	112578825	Frame_Shift_Del	T	-	p.K1066fs
BLCA	TCGA-FD-A5C1-01	SSH1	ENST00000360239.3,ENST00000551165.1,ENST00000326495.5	chr12	109212024:109212089:109217033:109217137:109246413:109246454,	109217034	109217137	109217075	109217075	Frame_Shift_Del	G	-	p.P58fs
BLCA	TCGA-FD-A62N-01	SLC22A10	ENST00000544661.1,ENST00000533483.1	chr11	63057418:63057493:63057749:63058039:63059011:63059094,	63057750	63058039	63057980	63057980	Frame_Shift_Del	C	-	p.P115fs
BLCA	TCGA-FD-A62N-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579544	7579556	Frame_Shift_Del	TCCGGGGACAGCA	-	p.MLSPD44fs
BLCA	TCGA-FD-A62O-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981271	201981272	Frame_Shift_Ins	-	G	p.LG117fs
BLCA	TCGA-FD-A62O-01	TCIRG1	ENST00000525516.1,ENST00000528981.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67814940:67815039:67815113:67815271:67815348:67815439,	67815114	67815271	67815128	67815128	Frame_Shift_Del	C	-	p.F441fs
BLCA	TCGA-FD-A62O-01	TCIRG1	ENST00000533005.1	chr11	67814940:67815039:67815113:67815439:67816345:67816394,	67815114	67815439	67815128	67815128	Frame_Shift_Del	C	-	p.F441fs
BLCA	TCGA-FD-A62P-01	SF3B3	ENST00000302516.5,ENST00000565990.2	chr16	70603908:70604052:70604997:70605102:70605575:70606202,	70604998	70605102	70605099	70605100	Frame_Shift_Ins	-	A	p.K1171fs
BLCA	TCGA-FD-A62S-01	TUBA1B	ENST00000336023.5,ENST00000550367.1,ENST00000547765.1,ENST00000332858.6	chr12	49522688:49522721:49523024:49523173:49523282:49523505,	49523025	49523173	49523090	49523091	Frame_Shift_Del	CA	-	p.A104fs
BLCA	TCGA-FD-A62S-01	OAS2	ENST00000392583.2	chr12	113416406:113416590:113424842:113425113:113433100:113433279,	113424843	113425113	113425052	113425052	Frame_Shift_Del	C	-	p.I129fs
BLCA	TCGA-FD-A6TA-01	CCT8	ENST00000431234.1,ENST00000286788.4,ENST00000484403.1	chr21	30439910:30440026:30442567:30442658:30445851:30445886,30441743:30441823:30442567:30442658:30445851:30445886,	30442568	30442658	30442607	30442608	Frame_Shift_Ins	-	CT	p.E38fs
BLCA	TCGA-FD-A6TB-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248803	44248807	Frame_Shift_Del	GAATT	-	p.NS235fs
BLCA	TCGA-FD-A6TC-01	PLEKHG6	ENST00000011684.7,ENST00000449001.2,ENST00000304581.8,ENST00000396988.3	chr12	6435593:6435739:6436419:6437112:6437301:6437651,	6436420	6437112	6436467	6436468	Frame_Shift_Del	AC	-	p.D541fs
BLCA	TCGA-FD-A6TC-01	KIF21A	ENST00000544797.2,ENST00000541463.2	chr12	39703553:39703568:39705218:39705355:39713707:39713815,39703553:39703568:39705218:39705355:39711874:39712003,	39705219	39705355	39705303	39705303	Frame_Shift_Del	G	-	p.Q1339fs
BLCA	TCGA-FD-A6TC-01	ZC3H7A	ENST00000572870.1,ENST00000575170.1,ENST00000571198.1,ENST00000355758.4,ENST00000396516.2	chr16	11870613:11870765:11873021:11873219:11875280:11875320,	11873022	11873219	11873143	11873143	Frame_Shift_Del	G	-	p.S62fs
BLCA	TCGA-FD-A6TD-01	TSEN54	ENST00000583173.1	chr17	73512641:73512697:73513089:73513153:73513241:73513325,	73513090	73513153	73513126	73513126	Frame_Shift_Del	G	-	p.E86fs
BLCA	TCGA-FD-A6TD-01	TSEN54	ENST00000583454.1	chr17	73512641:73512697:73512826:73513153:73513241:73513325,	73512827	73513153	73513126	73513126	Frame_Shift_Del	G	-	p.E86fs
BLCA	TCGA-FD-A6TE-01	CDKL3	ENST00000523054.1	chr5	133685984:133686118:133695587:133695782:133706688:133706695,	133695588	133695782	133695761	133695761	Frame_Shift_Del	C	-	p.V63fs
BLCA	TCGA-FD-A6TF-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516137	195516137	Frame_Shift_Del	G	-	p.H772fs
BLCA	TCGA-FD-A6TF-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
BLCA	TCGA-FD-A6TF-01	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101243383:101243516:101245638:101245765:101251467:101251551,	101245639	101245765	101245758	101245759	Frame_Shift_Ins	-	A	p.L704fs
BLCA	TCGA-FD-A6TG-01	ATP9A	ENST00000338821.5	chr20	50292670:50292747:50305602:50305678:50307277:50307358,	50305603	50305678	50305661	50305662	Frame_Shift_Ins	-	G	p.P247fs
BLCA	TCGA-FD-A6TH-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037940	49037950	Frame_Shift_Del	CATACAAGGAT	-	p.AYKD727fs
BLCA	TCGA-FD-A6TI-01	MON1B	ENST00000248248.3,ENST00000567291.1,ENST00000569610.1	chr16	77225372:77225530:77227347:77227674:77228231:77228257,	77227348	77227674	77227491	77227491	Frame_Shift_Del	G	-	p.G98fs
BLCA	TCGA-FD-A6TI-01	MON1B	ENST00000564006.1	chr16	77225372:77225530:77227333:77227674:77228231:77228257,	77227334	77227674	77227491	77227491	Frame_Shift_Del	G	-	p.G98fs
BLCA	TCGA-FD-A6TK-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101250	27101250	Frame_Shift_Del	G	-	p.R1511fs
BLCA	TCGA-FJ-A3Z7-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204411653:204411761:204412544:204412725:204413195:204413290,	204412545	204412725	204412694	204412697	Frame_Shift_Del	ACTG	-	p.QF966fs
BLCA	TCGA-FJ-A3Z7-01	FAM120B	ENST00000252510.9,ENST00000540480.1,ENST00000476287.1,ENST00000537664.1	chr6	170667313:170667406:170697374:170697581:170700100:170700209,	170697375	170697581	170697422	170697423	Frame_Shift_Ins	-	CG	p.R778fs
BLCA	TCGA-FJ-A3Z7-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559126	56559127	Frame_Shift_Ins	-	G	p.G1070fs
BLCA	TCGA-FJ-A3Z9-01	UBE3C	ENST00000348165.5,ENST00000389103.4	chr7	156962997:156963144:156967612:156967728:156971383:156971541,	156967613	156967728	156967650	156967653	Frame_Shift_Del	TGTT	-	p.LF127fs
BLCA	TCGA-FJ-A3Z9-01	KHDRBS3	ENST00000355849.5,ENST00000517394.1,ENST00000524199.1	chr8	136533479:136533598:136554896:136555013:136560996:136561143,	136554897	136555013	136554967	136554968	Frame_Shift_Ins	-	A	p.TK93fs
BLCA	TCGA-FJ-A3Z9-01	PARD6A	ENST00000458121.2	chr16	67694861:67695004:67695357:67695580:67695798:67696633,	67695358	67695580	67695546	67695547	Frame_Shift_Ins	-	C	p.P85fs
BLCA	TCGA-FJ-A3Z9-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
BLCA	TCGA-FJ-A3ZE-01	NOP14	ENST00000416614.2,ENST00000314262.6	chr4	2941016:2941070:2941253:2941372:2943308:2943443,	2941254	2941372	2941321	2941327	Frame_Shift_Del	GGCAGAG	-	p.LCR749fs
BLCA	TCGA-FJ-A3ZE-01	PPFIA3	ENST00000602351.1,ENST00000602848.1	chr19	49646240:49646261:49649199:49649262:49651339:49651515,	49649200	49649262	49649253	49649253	Frame_Shift_Del	G	-	p.T934fs
BLCA	TCGA-FJ-A3ZF-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257784	6257785	Frame_Shift_Ins	-	T	p.K15fs
BLCA	TCGA-FT-A3EE-01	RHBDD1	ENST00000392062.2,ENST00000341329.3,ENST00000491490.1,ENST00000493526.1	chr2	227773537:227773594:227778923:227779067:227860146:227860391,	227778924	227779067	227779059	227779059	Frame_Shift_Del	G	-	p.W283fs
BLCA	TCGA-FT-A3EE-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88665027:88665120:88666198:88666356:88675341:88675459,	88666199	88666356	88666210	88666211	Frame_Shift_Ins	-	GC	p.A315fs
BLCA	TCGA-G2-A2EC-01	CENPC	ENST00000513216.1,ENST00000515140.1	chr4	68357897:68357993:68358468:68358715:68359601:68359706,	68358469	68358715	68358626	68358627	Frame_Shift_Ins	-	T	p.S794fs
BLCA	TCGA-G2-A2EC-01	CENPC	ENST00000273853.6,ENST00000506882.1	chr4	68357897:68357993:68358586:68358715:68359601:68359706,	68358587	68358715	68358626	68358627	Frame_Shift_Ins	-	T	p.S794fs
BLCA	TCGA-G2-A2EC-01	PAN2	ENST00000547994.1,ENST00000440411.3,ENST00000551359.1,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1	chr12	56720096:56720193:56720400:56720743:56721147:56721415,	56720401	56720743	56720730	56720730	Frame_Shift_Del	G	-	p.F311fs
BLCA	TCGA-G2-A2EC-01	GTF3A	ENST00000493903.1,ENST00000470606.1,ENST00000381140.4,ENST00000439403.1,ENST00000435781.1,ENST00000466776.1	chr13	28004674:28004758:28006867:28006941:28008275:28008287,	28006868	28006941	28006890	28006890	Frame_Shift_Del	A	-	p.K171fs
BLCA	TCGA-G2-A2EF-01	SYNC	ENST00000373484.3	chr1	33145960:33147461:33149858:33149983:33160465:33161645,	33149859	33149983	33149943	33149943	Frame_Shift_Del	C	-	p.R425fs
BLCA	TCGA-G2-A2EF-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89414162:89414306:89415315:89415482:89421076:89421143,	89415316	89415482	89415386	89415386	Frame_Shift_Del	T	-	p.V783fs
BLCA	TCGA-G2-A2EJ-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97875417:97875446:97875536:97875609:97877282:97877311,	97875537	97875609	97875579	97875580	Frame_Shift_Ins	-	A	p.E1113fs
BLCA	TCGA-G2-A2EJ-01	SAMHD1	ENST00000262878.4	chr20	35532559:35532652:35533766:35533906:35539620:35539736,	35533767	35533906	35533895	35533896	Frame_Shift_Ins	-	A	p.L428fs
BLCA	TCGA-G2-A2EO-01	SLC14A1	ENST00000589891.1,ENST00000415427.3,ENST00000588179.1,ENST00000436407.3,ENST00000586951.1,ENST00000591943.1	chr18	43304914:43304978:43310264:43310436:43310979:43311048,43307338:43307383:43310264:43310436:43310979:43311048,	43310265	43310436	43310353	43310353	Frame_Shift_Del	C	-	p.S23fs
BLCA	TCGA-G2-A2ES-01	ALOX5	ENST00000374391.2,ENST00000542434.1	chr10	45919531:45919595:45920407:45920580:45924065:45924212,	45920408	45920580	45920479	45920480	Frame_Shift_Ins	-	G	p.L245fs
BLCA	TCGA-G2-A2ES-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220513	29220513	Frame_Shift_Del	G	-	p.A1548fs
BLCA	TCGA-G2-A2ES-01	TOP2A	ENST00000423485.1	chr17	38563800:38563926:38564218:38564376:38564743:38564882,	38564219	38564376	38564250	38564251	Frame_Shift_Ins	-	T	p.I490fs
BLCA	TCGA-G2-A2ES-01	ITCH	ENST00000483727.1,ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33049897:33050026:33057852:33057925:33059248:33059320,	33057853	33057925	33057885	33057897	Frame_Shift_Del	ACTTCAAAGCAAA	-	p.DFKAK486fs
BLCA	TCGA-G2-A3IB-01	PCM1	ENST00000519253.1,ENST00000522275.1,ENST00000327578.8,ENST00000325083.8,ENST00000524226.1	chr8	17867055:17867253:17868117:17868177:17868745:17868875,	17868118	17868177	17868136	17868137	Frame_Shift_Ins	-	TC	p.D1727fs
BLCA	TCGA-G2-A3IB-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420342	49420343	Frame_Shift_Ins	-	GC	p.H5136fs
BLCA	TCGA-G2-A3IE-01	DAP3	ENST00000466384.1,ENST00000343043.3,ENST00000368336.5,ENST00000497826.1,ENST00000421487.2,ENST00000471214.1,ENST00000462978.1,ENST00000471642.2,ENST00000535183.1	chr1	155697398:155697529:155698832:155698913:155698998:155699157,	155698833	155698913	155698864	155698867	Frame_Shift_Del	AGAG	-	p.KR212fs
BLCA	TCGA-G2-A3IE-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	713382	713383	Frame_Shift_Del	TA	-	p.I873fs
BLCA	TCGA-G2-A3VY-01	YWHAZ	ENST00000395956.3,ENST00000395957.2,ENST00000395953.2,ENST00000353245.3,ENST00000395948.2,ENST00000395951.3,ENST00000522542.1,ENST00000395958.2,ENST00000457309.1,ENST00000419477.2,ENST00000523848.1,ENST00000521607.1,ENST00000522819.1,ENST00000521309.1	chr8	101932943:101932980:101936182:101936278:101936362:101936526,	101936183	101936278	101936227	101936245	Frame_Shift_Del	TGTATGACTCTTCACTTAA	-	p.LSEESYK206fs
BLCA	TCGA-G2-A3VY-01	RFPL2	ENST00000400237.1,ENST00000400236.3	chr22	32588888:32589179:32590331:32590477:32598319:32598537,	32590332	32590477	32590428	32590434	Frame_Shift_Del	TCCCACC	-	p.GGN55fs
BLCA	TCGA-G2-AA3B-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20434540:20434608:20438482:20438617:20441343:20441749,	20438483	20438617	20438491	20438504	Frame_Shift_Del	TTCAGAAGTGAAAG	-	p.SEVKV386fs
BLCA	TCGA-G2-AA3B-01	SIGLEC9	ENST00000440804.3	chr19	51628164:51628652:51628853:51629132:51629337:51629385,	51628854	51629132	51628988	51628988	Frame_Shift_Del	T	-	p.S186fs
BLCA	TCGA-G2-AA3C-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
BLCA	TCGA-G2-AA3C-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000473533.2,ENST00000395187.2,ENST00000412272.2	chr10	69752362:69752439:69773782:69773943:69785302:69785433,	69773783	69773943	69773880	69773881	Frame_Shift_Ins	-	T	p.N324fs
BLCA	TCGA-G2-AA3C-01	LRP5L	ENST00000402859.2,ENST00000444995.3,ENST00000402785.2	chr22	25750723:25750779:25753221:25753393:25755793:25756156,	25753222	25753393	25753264	25753264	Frame_Shift_Del	T	-	p.E132fs
BLCA	TCGA-G2-AA3C-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938449	44938450	Frame_Shift_Ins	-	GT	p.V1000fs
BLCA	TCGA-G2-AA3D-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19253780:19253918:19255906:19256068:19256290:19256605,	19255907	19256068	19256036	19256036	Frame_Shift_Del	T	-	p.R267fs
BLCA	TCGA-G2-AA3F-01	PLAT	ENST00000519510.1	chr8	42040236:42040408:42042598:42042676:42045423:42045534,	42042599	42042676	42042656	42042657	Frame_Shift_Ins	-	GTAG	p.V192fs
BLCA	TCGA-G2-AA3F-01	PLAT	ENST00000220809.4,ENST00000429089.2,ENST00000352041.3,ENST00000270189.6	chr8	42040236:42040408:42042598:42042690:42044915:42045090,	42042599	42042690	42042656	42042657	Frame_Shift_Ins	-	GTAG	p.V192fs
BLCA	TCGA-G2-AA3F-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63486281	63486282	Frame_Shift_Ins	-	A	p.E103fs
BLCA	TCGA-G2-AA3F-01	ZFP36L1	ENST00000553375.1	chr14	69257049:69257209:69259598:69259787:69262791:69262931,	69259599	69259787	69259606	69259624	Frame_Shift_Del	AAAACTTCGCTCAAGTCGA	-	p.FDLSEVL11fs
BLCA	TCGA-G2-AA3F-01	KANSL1	ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1	chr17	44116024:44116052:44116392:44116581:44117067:44117250,	44116393	44116581	44116518	44116519	Frame_Shift_Ins	-	C	p.A756fs
BLCA	TCGA-GC-A3BM-01	NOP14	ENST00000398071.4,ENST00000416614.2,ENST00000502735.1,ENST00000314262.6	chr4	2952840:2952972:2954001:2954124:2955237:2955372,	2954002	2954124	2954005	2954006	Frame_Shift_Ins	-	A	p.L289fs
BLCA	TCGA-GC-A3BM-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971092	21971093	Frame_Shift_Del	CC	-	p.G103fs
BLCA	TCGA-GC-A3BM-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971092	21971093	Frame_Shift_Del	CC	-	p.G103fs
BLCA	TCGA-GC-A3BM-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
BLCA	TCGA-GC-A3BM-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465981	59465981	Frame_Shift_Del	A	-	p.K890fs
BLCA	TCGA-GC-A3I6-01	WDR81	ENST00000309182.5	chr17	1619840:1619927:1631283:1631920:1633673:1633781,	1631284	1631920	1631642	1631642	Frame_Shift_Del	C	-	p.A1130fs
BLCA	TCGA-GC-A3I6-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467047	58467047	Frame_Shift_Del	T	-	p.M788fs
BLCA	TCGA-GC-A3RB-01	SLC25A4	ENST00000491736.1	chr4	186066219:186066404:186066508:186067053:186067967:186068395,	186066509	186067053	186067010	186067011	Frame_Shift_Ins	-	A	p.T233fs
BLCA	TCGA-GC-A3RB-01	SLC25A4	ENST00000281456.6	chr4	186066219:186066404:186066912:186067053:186067967:186068395,	186066913	186067053	186067010	186067011	Frame_Shift_Ins	-	A	p.T233fs
BLCA	TCGA-GC-A3RB-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579413	7579414	Frame_Shift_Ins	-	C	p.P92fs
BLCA	TCGA-GC-A3RC-01	NFE2L1	ENST00000585291.1,ENST00000357480.5	chr17	46128478:46128990:46133747:46133960:46134705:46134860,	46133748	46133960	46133814	46133814	Frame_Shift_Del	G	-	p.D193fs
BLCA	TCGA-GC-A3RC-01	CXXC1	ENST00000412036.2,ENST00000285106.6,ENST00000589548.1,ENST00000586837.1,ENST00000589940.1	chr18	47812118:47812298:47812391:47812627:47812908:47813009,	47812392	47812627	47812527	47812533	Frame_Shift_Del	CCCTCCA	-	p.GGG106fs
BLCA	TCGA-GC-A3RC-01	CYP4F3	ENST00000587360.1	chr19	15752224:15752423:15757861:15757915:15758006:15758134,	15757862	15757915	15757870	15757874	Frame_Shift_Del	GTACC	-	p.VP118fs
BLCA	TCGA-GC-A3RC-01	SOX10	ENST00000396884.2,ENST00000360880.2	chr22	38370050:38370205:38373873:38374142:38379363:38379421,	38373874	38374142	38374040	38374040	Frame_Shift_Del	C	-	p.R178fs
BLCA	TCGA-GC-A3RD-01	ACTL6B	ENST00000485601.1,ENST00000160382.5,ENST00000487225.1,ENST00000461605.1,ENST00000489904.1	chr7	100247685:100247758:100252641:100252742:100253043:100253076,	100252642	100252742	100252715	100252716	Frame_Shift_Ins	-	T	p.I99fs
BLCA	TCGA-GC-A3YS-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156526324:156526485:156530725:156530813:156531629:156531793,	156530726	156530813	156530742	156530743	Frame_Shift_Ins	-	C	p.G371fs
BLCA	TCGA-GC-A3YS-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037882	49037897	Frame_Shift_Del	ATGTATGGCATATGCA	-	p.MYGICK708fs
BLCA	TCGA-GC-A6I1-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762331	36762332	Frame_Shift_Ins	-	A	p.E755fs
BLCA	TCGA-GC-A6I3-01	HSPG2	ENST00000439717.2,ENST00000374695.3	chr1	22216473:22216634:22216919:22216978:22217077:22217187,	22216920	22216978	22216939	22216940	Frame_Shift_Ins	-	A	p.V132fs
BLCA	TCGA-GC-A6I3-01	WDR19	ENST00000502389.1,ENST00000503697.1,ENST00000288634.7,ENST00000506869.1,ENST00000506503.1	chr4	39184167:39184183:39187345:39187437:39188158:39188224,	39187346	39187437	39187404	39187404	Frame_Shift_Del	A	-	p.Q22fs
BLCA	TCGA-GC-A6I3-01	C6orf223	ENST00000448947.2	chr6	43968756:43968880:43969789:43969864:43970417:43971142,43968368:43968437:43969789:43969864:43970417:43971142,	43969790	43969864	43969819	43969819	Frame_Shift_Del	A	-	p.R80fs
BLCA	TCGA-GD-A2C5-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981484	201981494	Frame_Shift_Del	CTGATGAGCTC	-	p.SDEL133fs
BLCA	TCGA-GD-A3OP-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980309	201980309	Frame_Shift_Del	C	-	p.F15fs
BLCA	TCGA-GD-A3OP-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980309	201980309	Frame_Shift_Del	C	-	p.F15fs
BLCA	TCGA-GD-A3OP-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981483	201981484	Frame_Shift_Del	TC	-	p.S133fs
BLCA	TCGA-GD-A3OQ-01	DPPA4	ENST00000495679.1,ENST00000487299.1,ENST00000335658.6	chr3	109047864:109047935:109049370:109049659:109050580:109050631,	109049371	109049659	109049606	109049606	Frame_Shift_Del	T	-	p.K148fs
BLCA	TCGA-GD-A3OQ-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229719	7229725	Frame_Shift_Del	TCGGCCA	-	p.SAI463fs
BLCA	TCGA-GD-A3OQ-01	CCAR1	ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6	chr10	70525644:70525836:70530962:70531202:70532744:70532856,	70530963	70531202	70531073	70531074	Frame_Shift_Ins	-	A	p.K804fs
BLCA	TCGA-GD-A6C6-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44870205:44870264:44879854:44879975:44894175:44894230,	44879855	44879975	44879934	44879935	Frame_Shift_Ins	-	TT	p.L175fs
BLCA	TCGA-GD-A76B-01	SAP130	ENST00000259234.6,ENST00000259235.3,ENST00000357702.5	chr2	128707442:128707568:128707733:128707982:128712559:128712918,	128707734	128707982	128707874	128707874	Frame_Shift_Del	T	-	p.K870fs
BLCA	TCGA-GU-A42P-01	SIGLEC9	ENST00000440804.3	chr19	51628164:51628652:51628853:51629132:51629337:51629385,	51628854	51629132	51628955	51628955	Frame_Shift_Del	C	-	p.P176fs
BLCA	TCGA-GU-A42R-01	PDCD11	ENST00000369797.3	chr10	105166365:105166547:105169455:105169563:105172872:105173079,	105169456	105169563	105169473	105169474	Frame_Shift_Ins	-	A	p.T297fs
BLCA	TCGA-GU-A762-01	KLHL2	ENST00000506824.1,ENST00000226725.6,ENST00000514860.1,ENST00000421009.2,ENST00000506761.1,ENST00000509028.1,ENST00000538127.1	chr4	166231704:166231902:166232615:166232717:166234389:166234518,	166232616	166232717	166232654	166232654	Frame_Shift_Del	G	-	p.E426fs
BLCA	TCGA-GU-A763-01	KANK3	ENST00000330915.3,ENST00000593649.1	chr19	8399203:8399303:8399383:8400676:8402678:8402740,	8399384	8400676	8399533	8399534	Frame_Shift_Ins	-	C	p.A393fs
BLCA	TCGA-GU-A766-01	BRD2	ENST00000395289.2,ENST00000374831.4,ENST00000607833.1,ENST00000495733.1,ENST00000374825.4,ENST00000395287.1	chr6	32940506:32940704:32942238:32942542:32943160:32943298,	32942239	32942542	32942379	32942379	Frame_Shift_Del	C	-	p.T57fs
BLCA	TCGA-GU-A766-01	NMT1	ENST00000592782.1,ENST00000258960.2	chr17	43181076:43181244:43182226:43182364:43182986:43183354,	43182227	43182364	43182233	43182233	Frame_Shift_Del	T	-	p.F447fs
BLCA	TCGA-GU-A767-01	KNTC1	ENST00000377192.2,ENST00000333479.7	chr12	123086082:123086172:123087115:123087287:123087375:123087434,	123087116	123087287	123087221	123087222	Frame_Shift_Del	GC	-	p.A1587fs
BLCA	TCGA-GU-A767-01	GTSE1	ENST00000454366.1,ENST00000479645.1	chr22	46719086:46719159:46722332:46722551:46724584:46724786,	46722333	46722551	46722446	46722447	Frame_Shift_Ins	-	C	p.L541fs
BLCA	TCGA-GU-AATO-01	MSRA	ENST00000317173.4,ENST00000523637.2,ENST00000382490.5,ENST00000528246.1,ENST00000518255.1,ENST00000522907.1	chr8	10102613:10102733:10159043:10159148:10177392:10177401,	10159044	10159148	10159133	10159133	Frame_Shift_Del	C	-	p.H75fs
BLCA	TCGA-GU-AATO-01	GGT2	ENST00000401924.1,ENST00000424627.1	chr22	21576154:21576241:21576372:21576503:21579679:21579843,	21576373	21576503	21576417	21576417	Frame_Shift_Del	C	-	p.G84fs
BLCA	TCGA-GU-AATP-01	SYTL1	ENST00000483926.1,ENST00000485269.1,ENST00000543823.1,ENST00000496001.1,ENST00000318074.5	chr1	27677299:27677443:27677748:27677827:27677946:27678036,	27677749	27677827	27677811	27677811	Frame_Shift_Del	C	-	p.V409fs
BLCA	TCGA-GU-AATP-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4,ENST00000432282.1,ENST00000453771.1	chr1	203772084:203772144:203786053:203786252:203787697:203787793,	203786054	203786252	203786224	203786225	Frame_Shift_Ins	-	T	p.YF9fs
BLCA	TCGA-GU-AATP-01	ZSWIM8	ENST00000604754.1,ENST00000603114.1,ENST00000603187.1,ENST00000603195.1,ENST00000433366.2,ENST00000604729.1	chr10	75559134:75559248:75559768:75559928:75560053:75560230,	75559769	75559928	75559891	75559891	Frame_Shift_Del	C	-	p.H1596fs
BLCA	TCGA-GU-AATP-01	ZSWIM8	ENST00000603409.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000605216.1	chr10	75559134:75559248:75559768:75559952:75560053:75560230,	75559769	75559952	75559891	75559891	Frame_Shift_Del	C	-	p.H1596fs
BLCA	TCGA-GU-AATP-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000606321.1,ENST00000302349.5	chr12	123648496:123648637:123649848:123650024:123651201:123651336,	123649849	123650024	123649869	123649872	Frame_Shift_Del	TCTG	-	p.TE915fs
BLCA	TCGA-GU-AATP-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578267	7578283	Frame_Shift_Del	AAGATGCTGAGGAGGGG	-	p.APPQHL189fs
BLCA	TCGA-GV-A3JV-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981520	201981521	Frame_Shift_Ins	-	G	p.D146fs
BLCA	TCGA-GV-A3JV-01	KRT19	ENST00000593096.1,ENST00000361566.3,ENST00000455635.1	chr17	39680770:39680792:39681094:39681251:39681442:39681525,	39681095	39681251	39681230	39681231	Frame_Shift_Ins	-	AG	p.L175fs
BLCA	TCGA-GV-A3JV-01	ST6GALNAC1	ENST00000156626.7,ENST00000590878.1,ENST00000359088.5	chr17	74623496:74623665:74625093:74625793:74639589:74639742,	74625094	74625793	74625715	74625716	Frame_Shift_Del	TG	-	p.A70fs
BLCA	TCGA-GV-A3JZ-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349651	89349651	Frame_Shift_Del	G	-	p.S1100fs
BLCA	TCGA-GV-A3QF-01	PLD1	ENST00000340989.4,ENST00000351298.4	chr3	171395355:171395484:171404474:171404588:171405160:171405374,	171404475	171404588	171404550	171404550	Frame_Shift_Del	G	-	p.H598fs
BLCA	TCGA-GV-A3QF-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44053621:44053729:44055274:44055404:44057647:44057763,	44055275	44055404	44055308	44055308	Frame_Shift_Del	C	-	p.S169fs
BLCA	TCGA-GV-A3QH-01	MFSD10	ENST00000507555.1,ENST00000507272.1,ENST00000514800.1,ENST00000329687.4,ENST00000514031.1,ENST00000355443.4,ENST00000503596.1	chr4	2932787:2932877:2932953:2933001:2933101:2933192,	2932954	2933001	2932969	2932969	Frame_Shift_Del	C	-	p.V384fs
BLCA	TCGA-GV-A3QI-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541806	187541807	Frame_Shift_Ins	-	TTTAGGTGACT	p.-1978fs
BLCA	TCGA-GV-A3QI-01	USP28	ENST00000537490.1,ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000535607.1,ENST00000537706.1	chr11	113688552:113688559:113694326:113694422:113697954:113698082,	113694327	113694422	113694349	113694350	Frame_Shift_Del	TT	-	p.KI420fs
BLCA	TCGA-GV-A3QI-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35234226:35234474:35240716:35240865:35242777:35242932,	35240717	35240865	35240754	35240755	Frame_Shift_Del	CT	-	p.E1088fs
BLCA	TCGA-GV-A3QI-01	PDE9A	ENST00000335512.4,ENST00000486902.1,ENST00000467162.1,ENST00000291539.6	chr21	44073922:44073993:44108026:44108104:44119077:44119121,44106306:44106372:44108026:44108104:44119077:44119121,	44108027	44108104	44108087	44108088	Frame_Shift_Ins	-	C	p.P68fs
BLCA	TCGA-GV-A3QK-01	ARIH2	ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000465217.1,ENST00000452385.1	chr3	49004638:49004708:49005966:49006088:49008027:49008077,	49005967	49006088	49005998	49005998	Frame_Shift_Del	C	-	p.L190fs
BLCA	TCGA-GV-A3QK-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920934	57920934	Frame_Shift_Del	C	-	p.A669fs
BLCA	TCGA-GV-A40E-01	BEND6	ENST00000484701.1,ENST00000370746.3,ENST00000370750.2,ENST00000545789.1	chr6	56879930:56880151:56882004:56882197:56883218:56883269,	56882005	56882197	56882036	56882037	Frame_Shift_Ins	-	T	p.N185fs
BLCA	TCGA-GV-A40E-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98636010:98636148:98638000:98638179:98639740:98639855,	98638001	98638179	98638102	98638103	Frame_Shift_Ins	-	C	p.G509fs
BLCA	TCGA-GV-A40E-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000567239.1	chr16	69660305:69660431:69680930:69681489:69687138:69687331,	69680931	69681489	69681191	69681191	Frame_Shift_Del	A	-	p.N78fs
BLCA	TCGA-GV-A40G-01	PLD2	ENST00000572940.1,ENST00000263088.6,ENST00000571273.1,ENST00000576983.1	chr17	4721591:4721680:4721788:4721902:4722068:4722118,	4721789	4721902	4721806	4721807	Frame_Shift_Ins	-	A	p.V677fs
BLCA	TCGA-GV-A40G-01	ASNA1	ENST00000591090.1,ENST00000357332.3	chr19	12856193:12856339:12856422:12856573:12858010:12858118,	12856423	12856573	12856516	12856520	Frame_Shift_Del	GCGGG	-	p.RG185fs
BLCA	TCGA-GV-A40G-01	ZNF341	ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32332908:32333105:32336728:32336878:32340977:32341229,	32336729	32336878	32336863	32336863	Frame_Shift_Del	C	-	p.G158fs
BLCA	TCGA-GV-A6ZA-01	RTKN	ENST00000272430.5,ENST00000305557.5,ENST00000233330.6	chr2	74654632:74654719:74655394:74655523:74655757:74655864,	74655395	74655523	74655512	74655513	Frame_Shift_Ins	-	T	p.E310fs
BLCA	TCGA-GV-A6ZA-01	CHD2	ENST00000557381.1,ENST00000555582.2,ENST00000394196.4	chr15	93498652:93498742:93499688:93499879:93510554:93510571,	93499689	93499879	93499758	93499761	Frame_Shift_Del	TCTT	-	p.SL627fs
BLCA	TCGA-GV-A6ZA-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000401672.3,ENST00000427222.2,ENST00000216061.5	chr22	50879250:50879455:50882294:50882546:50882627:50882800,	50882295	50882546	50882376	50882377	Frame_Shift_Ins	-	C	p.P862fs
BLCA	TCGA-H4-A2HO-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000471618.1,ENST00000478060.1,ENST00000469667.1	chr16	76461348:76461496:76481908:76482112:76482663:76482848,	76481909	76482112	76481915	76481915	Frame_Shift_Del	A	-	p.E181fs
BLCA	TCGA-H4-A2HQ-01	MYEF2	ENST00000267836.6,ENST00000324324.7,ENST00000560513.1	chr15	48444070:48444139:48444430:48444481:48445988:48446090,	48444431	48444481	48444460	48444460	Frame_Shift_Del	C	-	p.G370fs
BLCA	TCGA-H4-A2HQ-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1	chrX	123185164:123185244:123189977:123190085:123191715:123191827,	123189978	123190085	123189994	123189994	Frame_Shift_Del	C	-	p.L405fs
BLCA	TCGA-HQ-A2OE-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126859151:126859274:126860222:126860612:126862309:126862470,	126860223	126860612	126860380	126860381	Frame_Shift_Ins	-	A	p.T88fs
BLCA	TCGA-HQ-A2OF-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879686	104879687	Frame_Shift_Ins	-	T	p.R23fs
BLCA	TCGA-HQ-A2OF-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879686	104879687	Frame_Shift_Ins	-	T	p.R23fs
BLCA	TCGA-HQ-A2OF-01	PLEKHG6	ENST00000011684.7,ENST00000449001.2,ENST00000396988.3,ENST00000536531.1	chr12	6422838:6422950:6424170:6424335:6424719:6424815,	6424171	6424335	6424295	6424305	Frame_Shift_Del	CCATCGAGAAG	-	p.TIEK108fs
BLCA	TCGA-HQ-A2OF-01	ABCC3	ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48744914:48745118:48745223:48745370:48745790:48745878,	48745224	48745370	48745251	48745251	Frame_Shift_Del	G	-	p.V555fs
BLCA	TCGA-HQ-A5ND-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805859	22805860	Frame_Shift_Ins	-	A	p.N675fs
BLCA	TCGA-HQ-A5NE-01	STXBP1	ENST00000373302.3,ENST00000373299.1	chr9	130420653:130420730:130422308:130422387:130423380:130423484,	130422309	130422387	130422354	130422354	Frame_Shift_Del	A	-	p.K98fs
BLCA	TCGA-HQ-A5NE-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761192	93761193	Frame_Shift_Ins	-	T	p.K58fs
BLCA	TCGA-K4-A3WS-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086923	109086924	Frame_Shift_Ins	-	G	p.R380fs
BLCA	TCGA-K4-A3WS-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248783	44248783	Frame_Shift_Del	G	-	p.Q243fs
BLCA	TCGA-K4-A3WU-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.K1389fs
BLCA	TCGA-K4-A3WV-01	RBM17	ENST00000432931.1	chr10	6131033:6131156:6139010:6139151:6143233:6143350,	6139011	6139151	6139098	6139098	Frame_Shift_Del	A	-	p.K24fs
BLCA	TCGA-K4-A3WV-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749492	33749493	Frame_Shift_Ins	-	A	p.D186fs
BLCA	TCGA-K4-A4AB-01	MTHFD2	ENST00000409601.1	chr2	74425755:74425869:74432831:74433016:74435695:74435848,	74432832	74433016	74432963	74432964	Frame_Shift_Ins	-	T	p.P79fs
BLCA	TCGA-K4-A4AC-01	MYOM3	ENST00000330966.7,ENST00000475306.1,ENST00000374434.3,ENST00000329601.7	chr1	24424412:24424501:24426169:24426265:24432409:24432567,	24426170	24426265	24426229	24426230	Frame_Shift_Del	AA	-	p.F200fs
BLCA	TCGA-K4-A4AC-01	SCAF8	ENST00000367178.3,ENST00000464628.1,ENST00000367186.4,ENST00000417268.1,ENST00000461219.1	chr6	155095122:155095206:155099134:155099179:155108994:155109156,	155099135	155099179	155099149	155099149	Frame_Shift_Del	G	-	p.V44fs
BLCA	TCGA-K4-A4AC-01	NAALADL1	ENST00000340252.4,ENST00000530139.1,ENST00000528977.1,ENST00000358658.3,ENST00000529685.1,ENST00000356632.3,ENST00000355721.3	chr11	64813916:64813998:64814946:64815037:64815118:64815204,	64814947	64815037	64815017	64815017	Frame_Shift_Del	C	-	p.G510fs
BLCA	TCGA-K4-A54R-01	HPX	ENST00000265983.3	chr11	6458854:6458882:6459585:6459739:6461394:6461516,	6459586	6459739	6459641	6459641	Frame_Shift_Del	T	-	p.A146fs
BLCA	TCGA-K4-A54R-01	HPX	ENST00000525057.1	chr11	6458854:6458882:6459581:6459739:6461394:6461516,	6459582	6459739	6459641	6459641	Frame_Shift_Del	T	-	p.A146fs
BLCA	TCGA-K4-A54R-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577065	7577065	Frame_Shift_Del	C	-	p.K292fs
BLCA	TCGA-K4-A5RH-01	EMC1	ENST00000375199.3,ENST00000477853.1,ENST00000375208.3,ENST00000494770.1	chr1	19546108:19546163:19547257:19547342:19549117:19549180,19546143:19546192:19547257:19547342:19549117:19549180,	19547258	19547342	19547319	19547319	Frame_Shift_Del	G	-	p.L871fs
BLCA	TCGA-K4-A5RH-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000427908.2	chr5	176737426:176737541:176738379:176738485:176738761:176738858,176737668:176737698:176738379:176738485:176738761:176738871,	176738380	176738485	176738408	176738408	Frame_Shift_Del	G	-	p.Q50fs
BLCA	TCGA-K4-A5RH-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
BLCA	TCGA-K4-A5RH-01	C5	ENST00000223642.1	chr9	123738977:123739183:123742360:123742532:123744121:123744170,	123742361	123742532	123742477	123742477	Frame_Shift_Del	G	-	p.P1181fs
BLCA	TCGA-K4-A5RH-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951092	48951093	Frame_Shift_Ins	-	G	p.V419fs
BLCA	TCGA-K4-A5RI-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61834432	61834433	Frame_Shift_Ins	-	G	p.Q287fs
BLCA	TCGA-K4-A6FZ-01	SLC50A1	ENST00000465546.1,ENST00000475824.1,ENST00000368404.4	chr1	155108774:155108852:155109303:155109427:155110454:155110570,155108791:155108872:155109303:155109427:155110036:155110072,155108774:155108852:155109303:155109427:155110054:155110198,155108774:155108852:155109303:155109427:155110036:155110072,	155109304	155109427	155109375	155109376	Frame_Shift_Ins	-	TGCG	p.-78fs
BLCA	TCGA-K4-A6FZ-01	WDR49	ENST00000453925.2,ENST00000472600.1,ENST00000308378.3	chr3	167284617:167284682:167293705:167293939:167319914:167320063,167277851:167278016:167293705:167293939:167319914:167320063,	167293706	167293939	167293808	167293808	Frame_Shift_Del	A	-	p.N129fs
BLCA	TCGA-K4-A6FZ-01	HMGA1	ENST00000401473.3,ENST00000347617.6,ENST00000478214.1,ENST00000374116.3	chr6	34208513:34208692:34210488:34210572:34211244:34211295,34208513:34208659:34210488:34210572:34211244:34211295,	34210489	34210572	34210526	34210526	Frame_Shift_Del	G	-	p.R58fs
BLCA	TCGA-K4-A6FZ-01	DNAH8	ENST00000327475.6,ENST00000373278.4,ENST00000449981.2	chr6	38691112:38691247:38697677:38697762:38702249:38702290,	38697678	38697762	38697694	38697695	Frame_Shift_Ins	-	T	p.NF181fs
BLCA	TCGA-K4-A6FZ-01	ROBO3	ENST00000528144.1,ENST00000528820.1	chr11	124747832:124748027:124748479:124748692:124749085:124749203,124747414:124747554:124748479:124748692:124749085:124749203,	124748480	124748692	124748563	124748563	Frame_Shift_Del	C	-	p.T1135fs
BLCA	TCGA-K4-A6FZ-01	CLUH	ENST00000575014.1,ENST00000570628.2,ENST00000435359.1,ENST00000538975.1	chr17	2598521:2598574:2598667:2598820:2599452:2599553,	2598668	2598820	2598756	2598757	Frame_Shift_Ins	-	GCAT	p.R780fs
BLCA	TCGA-K4-A83P-01	NTNG2	ENST00000393228.4,ENST00000360670.3,ENST00000372179.3	chr9	135037333:135037626:135041735:135042431:135073352:135073996,	135041736	135042431	135042359	135042359	Frame_Shift_Del	G	-	p.K47fs
BLCA	TCGA-KQ-A41N-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769341	176769342	Frame_Shift_Ins	-	T	p.N126fs
BLCA	TCGA-KQ-A41N-01	VCPKMT	ENST00000395860.2,ENST00000395859.2	chr14	50582556:50582629:50582786:50582897:50583004:50583275,	50582787	50582897	50582875	50582876	Frame_Shift_Ins	-	TAGTC	p.L97fs
BLCA	TCGA-KQ-A41N-01	VCPKMT	ENST00000491402.1	chr14	50582556:50582629:50582797:50582897:50583004:50583275,	50582798	50582897	50582875	50582876	Frame_Shift_Ins	-	TAGTC	p.L97fs
BLCA	TCGA-KQ-A41N-01	MIDN	ENST00000300952.2,ENST00000591446.2	chr19	1251837:1251900:1254165:1254477:1254900:1255060,	1254166	1254477	1254316	1254317	Frame_Shift_Ins	-	GG	p.R179fs
BLCA	TCGA-KQ-A41N-01	SREBF2	ENST00000361204.4,ENST00000424354.1	chr22	42271546:42271728:42273232:42273425:42273945:42274127,	42273233	42273425	42273239	42273239	Frame_Shift_Del	G	-	p.D465fs
BLCA	TCGA-KQ-A41O-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000470384.1,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981772:201981887:201982074:201982164:201982309:201982325,	201982075	201982164	201982128	201982129	Frame_Shift_Ins	-	A	p.D218fs
BLCA	TCGA-KQ-A41Q-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088659	27088659	Frame_Shift_Del	C	-	p.N756fs
BLCA	TCGA-KQ-A41R-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000419169.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183502810:183502967:183506279:183506350:183507514:183507575,	183506280	183506350	183506287	183506300	Frame_Shift_Del	CCCTGGTTGATTTC	-	p.PWLIS420fs
BLCA	TCGA-KQ-A41R-01	CLPTM1L	ENST00000508765.1	chr5	1325865:1325931:1330394:1330546:1331913:1331998,	1330395	1330546	1330403	1330418	Frame_Shift_Del	CGGCTCCAACACCCGC	-	p.AGVGAA353fs
BLCA	TCGA-KQ-A41R-01	CLPTM1L	ENST00000513250.1,ENST00000503151.1,ENST00000320895.5	chr5	1325865:1325931:1330394:1330498:1331913:1331998,	1330395	1330498	1330403	1330418	Frame_Shift_Del	CGGCTCCAACACCCGC	-	p.AGVGAA353fs
BLCA	TCGA-KQ-A41R-01	THBS2	ENST00000366787.3	chr6	169637264:169637441:169637719:169637890:169639693:169639790,	169637720	169637890	169637778	169637778	Frame_Shift_Del	G	-	p.T414fs
BLCA	TCGA-KQ-A41R-01	NCAPG2	ENST00000449727.2,ENST00000409423.1,ENST00000409339.3,ENST00000467785.1,ENST00000356309.3,ENST00000432615.1	chr7	158439151:158439255:158443523:158443664:158444984:158445101,	158443524	158443664	158443566	158443581	Frame_Shift_Del	CAGAGTAGAAAGTACA	-	p.GVLSTL1006fs
BLCA	TCGA-KQ-A41R-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
BLCA	TCGA-KQ-A41R-01	FRMD4A	ENST00000378503.1,ENST00000342409.2,ENST00000358621.4,ENST00000357447.2,ENST00000264546.6	chr10	13782511:13782577:13789735:13789819:13803646:13803669,	13789736	13789819	13789796	13789796	Frame_Shift_Del	A	-	p.L163fs
BLCA	TCGA-KQ-A41R-01	ATP2B1	ENST00000359142.3,ENST00000261173.2,ENST00000428670.3,ENST00000393164.2,ENST00000348959.3	chr12	89996819:89997031:89997488:89997702:89997931:89998123,	89997489	89997702	89997548	89997578	Frame_Shift_Del	TTCATCATTGTACGTGAGATGAGAGGCTTAT	-	p.NKPLISRTMMK920fs
BLCA	TCGA-KQ-A41R-01	KRT13	ENST00000468313.1,ENST00000464634.2	chr17	39659910:39659977:39661307:39661487:39661698:39661849,	39661308	39661487	39661400	39661401	Frame_Shift_Ins	-	CA	p.K135fs
BLCA	TCGA-LC-A66R-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643614	138643614	Frame_Shift_Del	A	-	p.P170fs
BLCA	TCGA-LC-A66R-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643614	138643614	Frame_Shift_Del	A	-	p.P170fs
BLCA	TCGA-LC-A66R-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937039	48937040	Frame_Shift_Ins	-	A	p.D270fs
BLCA	TCGA-LC-A66R-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182564	59182565	Frame_Shift_Del	CT	-	p.E665fs
BLCA	TCGA-MV-A51V-01	DCTN2	ENST00000434715.3,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000549394.1,ENST00000537439.1	chr12	57925797:57925889:57925995:57926098:57926354:57926426,	57925996	57926098	57926056	57926056	Frame_Shift_Del	C	-	p.A323fs
BLCA	TCGA-PQ-A6FI-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214558118	214558119	Frame_Shift_Ins	-	T	p.H360fs
BLCA	TCGA-PQ-A6FI-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150299404:150299533:150300986:150301052,150293435:150293549:150299404:150299533:150300986:150301052,	150299405	150299533	150299510	150299510	Frame_Shift_Del	A	-	p.K536fs
BLCA	TCGA-PQ-A6FI-01	CIZ1	ENST00000357558.5,ENST00000476239.1,ENST00000393608.1,ENST00000372938.5,ENST00000415526.1,ENST00000541172.1,ENST00000277465.4,ENST00000538431.1,ENST00000372948.3,ENST00000325721.8,ENST00000372954.1	chr9	130939866:130940042:130940647:130940769:130940987:130941075,	130940648	130940769	130940677	130940681	Frame_Shift_Del	ATTCT	-	p.EC530fs
BLCA	TCGA-PQ-A6FI-01	HDAC7	ENST00000445237.2,ENST00000380610.4,ENST00000430670.1,ENST00000450805.1,ENST00000427332.2,ENST00000354334.3,ENST00000434070.1,ENST00000417107.1,ENST00000080059.7	chr12	48192422:48192435:48192567:48192755:48213549:48213568,48192422:48192435:48192567:48192755:48196006:48196057,	48192568	48192755	48192604	48192604	Frame_Shift_Del	T	-	p.A74fs
BLCA	TCGA-PQ-A6FI-01	GPS1	ENST00000578279.1	chr17	80014399:80014426:80014504:80014648:80014715:80014850,	80014505	80014648	80014554	80014555	Frame_Shift_Ins	-	C	p.N430fs
BLCA	TCGA-PQ-A6FI-01	GPS1	ENST00000578552.1,ENST00000584460.1,ENST00000583486.1,ENST00000355130.2,ENST00000320548.4,ENST00000306823.6,ENST00000392358.2	chr17	80014399:80014426:80014504:80014642:80014715:80014850,	80014505	80014642	80014554	80014555	Frame_Shift_Ins	-	C	p.N430fs
BLCA	TCGA-PQ-A6FN-01	NVL	ENST00000467882.1,ENST00000391875.2,ENST00000361463.3,ENST00000281701.6	chr1	224492785:224492868:224495692:224495965:224499501:224499559,	224495693	224495965	224495876	224495876	Frame_Shift_Del	T	-	p.R144fs
BLCA	TCGA-PQ-A6FN-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6,ENST00000530092.1	chr19	1054778:1054877:1055095:1055350:1055905:1055938,	1055096	1055350	1055207	1055207	Frame_Shift_Del	C	-	p.R1354fs
BLCA	TCGA-R3-A69X-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2	chr13	75876378:75876537:75880448:75880607:75884077:75884287,	75880449	75880607	75880511	75880511	Frame_Shift_Del	A	-	p.L898fs
BLCA	TCGA-S5-A6DX-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236480	33236480	Frame_Shift_Del	C	-	p.S567fs
BLCA	TCGA-S5-A6DX-01	HDGF	ENST00000495212.1	chr1	156713954:156714140:156714799:156715165:156721134:156721288,	156714800	156715165	156714873	156714873	Frame_Shift_Del	T	-	p.N77fs
BLCA	TCGA-SY-A9G5-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.IP85fs
BLCA	TCGA-SY-A9G5-01	ELK4	ENST00000289703.4	chr1	205589741:205589966:205592803:205593019:205600759:205601090,	205592804	205593019	205592904	205592904	Frame_Shift_Del	A	-	p.L36fs
BLCA	TCGA-SY-A9G5-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384893	124384893	Frame_Shift_Del	T	-	p.K118fs
BLCA	TCGA-SY-A9G5-01	RNF214	ENST00000530849.1,ENST00000531287.1,ENST00000531452.1,ENST00000300650.4	chr11	117152029:117152120:117152315:117152414:117152609:117152627,	117152316	117152414	117152339	117152340	Frame_Shift_Ins	-	T	p.L266fs
BLCA	TCGA-SY-A9G5-01	PPP1R13B	ENST00000202556.9,ENST00000423488.2,ENST00000556597.1,ENST00000557082.1	chr14	104208425:104208628:104208990:104209160:104212709:104212825,	104208991	104209160	104209111	104209111	Frame_Shift_Del	C	-	p.V400fs
BLCA	TCGA-SY-A9G5-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465991	59465992	Frame_Shift_Ins	-	A	p.GK891fs
BLCA	TCGA-UY-A78K-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406038	91406039	Frame_Shift_Del	TC	-	p.R291fs
BLCA	TCGA-UY-A78K-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100309	168100309	Frame_Shift_Del	G	-	p.G804fs
BLCA	TCGA-UY-A78K-01	OXR1	ENST00000445937.1,ENST00000438229.2,ENST00000312046.6,ENST00000442977.2,ENST00000531443.1,ENST00000452423.2,ENST00000517566.2,ENST00000497705.1	chr8	107704955:107705105:107715133:107715318:107718609:107719082,	107715134	107715318	107715282	107715283	Frame_Shift_Del	AA	-	p.E275fs
BLCA	TCGA-UY-A78K-01	C12orf45	ENST00000552951.1	chr12	105381944:105382031:105385489:105385626:105388255:105388498,	105385490	105385626	105385508	105385509	Frame_Shift_Ins	-	CA	p.F75fs
BLCA	TCGA-UY-A78K-01	PTPN21	ENST00000554270.1,ENST00000556564.1,ENST00000536337.1,ENST00000328736.3	chr14	88945263:88946696:88951419:88951504:88952125:88952186,	88951420	88951504	88951495	88951495	Frame_Shift_Del	G	-	p.Q335fs
BLCA	TCGA-UY-A78K-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34049675:34049797:34060858:34060908:34061312:34061373,	34060859	34060908	34060893	34060894	Frame_Shift_Del	AG	-	p.R2914fs
BLCA	TCGA-UY-A78K-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220717	29220721	Frame_Shift_Del	AAAGG	-	p.KG1616fs
BLCA	TCGA-UY-A78K-01	SAFB	ENST00000454510.1,ENST00000589863.1,ENST00000538656.1,ENST00000588852.1,ENST00000592224.1,ENST00000433404.1,ENST00000292123.5	chr19	5654071:5654211:5654378:5654467:5657251:5657358,	5654379	5654467	5654461	5654462	Frame_Shift_Del	AG	-	p.E584fs
BLCA	TCGA-UY-A78M-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000487363.1,ENST00000397519.2	chr9	15486824:15486929:15489983:15490122:15506558:15506635,	15489984	15490122	15490016	15490017	Frame_Shift_Ins	-	AG	p.N86fs
BLCA	TCGA-UY-A78N-01	POLH	ENST00000535400.1,ENST00000372236.4	chr6	43572990:43573056:43578290:43578460:43581396:43582458,	43578291	43578460	43578415	43578439	Frame_Shift_Del	TTACTGTCATCAAGAACTGTAATAC	-	p.FTVIKNCNT400fs
BLCA	TCGA-UY-A78N-01	STYXL1	ENST00000248600.1,ENST00000454618.1,ENST00000359697.3,ENST00000451157.1,ENST00000431581.1	chr7	75633075:75633173:75634576:75634722:75643059:75643205,	75634577	75634722	75634671	75634672	Frame_Shift_Ins	-	GACCTTCCCT	p.F169fs
BLCA	TCGA-UY-A78N-01	RAPGEF3	ENST00000171000.4,ENST00000479866.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2	chr12	48134697:48134823:48135287:48135385:48137312:48137459,	48135288	48135385	48135329	48135330	Frame_Shift_Ins	-	A	p.E586fs
BLCA	TCGA-UY-A78N-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000568413.1,ENST00000561603.1	chr15	41820432:41820534:41821667:41821766:41822061:41822177,	41821668	41821766	41821681	41821691	Frame_Shift_Del	CCATGGTGGTG	-	p.HHHG379fs
BLCA	TCGA-UY-A78N-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579471	7579471	Frame_Shift_Del	G	-	p.P72fs
BLCA	TCGA-UY-A78O-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000409857.3,ENST00000486016.1	chr2	75917763:75917845:75919102:75919226:75921366:75921553,	75919103	75919226	75919154	75919155	Frame_Shift_Ins	-	TT	p.R365fs
BLCA	TCGA-UY-A78O-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
BLCA	TCGA-UY-A78O-01	MAPRE1	ENST00000375571.5	chr20	31427540:31427662:31434423:31434576:31436477:31438211,	31434424	31434576	31434531	31434531	Frame_Shift_Del	C	-	p.N235fs
BLCA	TCGA-UY-A8OB-01	DAPP1	ENST00000512369.1,ENST00000296414.7	chr4	100784166:100784229:100784926:100785012:100787190:100787278,	100784927	100785012	100784959	100784960	Frame_Shift_Del	AG	-	p.E212fs
BLCA	TCGA-UY-A8OB-01	DDB2	ENST00000378601.3,ENST00000256996.4	chr11	47238408:47238600:47254364:47254510:47256123:47256223,	47254365	47254510	47254498	47254499	Frame_Shift_Ins	-	A	p.D198fs
BLCA	TCGA-UY-A8OB-01	KNSTRN	ENST00000608100.1,ENST00000448395.2,ENST00000416151.2,ENST00000249776.8,ENST00000557920.1,ENST00000561169.1,ENST00000560321.1	chr15	40675455:40675523:40678562:40678695:40679359:40679407,	40678563	40678695	40678579	40678591	Frame_Shift_Del	CACTTCTAAGAGT	-	p.ATSKS107fs
BLCA	TCGA-UY-A8OB-01	CPNE2	ENST00000535318.2,ENST00000565766.1,ENST00000290776.8,ENST00000537605.1,ENST00000565874.1	chr16	57153110:57153190:57153472:57153562:57155004:57155103,	57153473	57153562	57153531	57153532	Frame_Shift_Del	TG	-	p.L217fs
BLCA	TCGA-UY-A8OB-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.R209fs
BLCA	TCGA-UY-A9PB-01	ANXA9	ENST00000368947.4	chr1	150960758:150960817:150967052:150967175:150967735:150968110,	150967053	150967175	150967125	150967126	Frame_Shift_Del	AG	-	p.R309fs
BLCA	TCGA-UY-A9PB-01	ANAPC4	ENST00000510092.1,ENST00000315368.3,ENST00000515848.1	chr4	25418046:25418220:25419237:25419361:25419776:25419883,	25419238	25419361	25419310	25419311	Frame_Shift_Del	TA	-	p.M717fs
BLCA	TCGA-UY-A9PB-01	KRT14	ENST00000476662.1,ENST00000167586.6	chr17	39739644:39739707:39739802:39739928:39740011:39740173,	39739803	39739928	39739923	39739924	Frame_Shift_Del	CT	-	p.E312fs
BLCA	TCGA-UY-A9PB-01	DHRSX	ENST00000441131.2	chrX	2184894:2184988:2209542:2209644:2326785:2326854,2184894:2184988:2209542:2209644:2310394:2310515,	2209543	2209644	2209621	2209621	Frame_Shift_Del	C	-	p.A104fs
BLCA	TCGA-UY-A9PD-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37369177	37369177	Frame_Shift_Del	G	-	p.G1934fs
BLCA	TCGA-UY-A9PD-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214774	108214774	Frame_Shift_Del	T	-	p.K530fs
BLCA	TCGA-UY-A9PD-01	SYMPK	ENST00000598329.2,ENST00000593504.1,ENST00000600237.1,ENST00000245934.7,ENST00000598155.1	chr19	46320055:46320232:46321216:46321404:46324641:46324743,	46321217	46321404	46321239	46321239	Frame_Shift_Del	A	-	p.L1020fs
BLCA	TCGA-UY-A9PE-01	CCM2L	ENST00000262659.8,ENST00000452892.1,ENST00000300415.8	chr20	30616797:30616927:30617502:30617641:30618803:30619983,	30617503	30617641	30617624	30617624	Frame_Shift_Del	G	-	p.R462fs
BLCA	TCGA-UY-A9PF-01	CDK3	ENST00000425876.2,ENST00000448471.1	chr17	73998591:73998693:73999275:73999479:74001378:74002078,	73999276	73999479	73999344	73999371	Frame_Shift_Del	GGGGACACCCAGCGAAGACACATGGCCC	-	p.LGTPSEDTWP219fs
BLCA	TCGA-XF-A9SG-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1	chr5	37292001:37292140:37292980:37293087:37294430:37294567,	37292981	37293087	37293010	37293010	Frame_Shift_Del	C	-	p.E1336fs
BLCA	TCGA-XF-A9SG-01	FBXL19	ENST00000471231.2,ENST00000562319.1,ENST00000427128.1,ENST00000380310.2,ENST00000338343.4	chr16	30938893:30938980:30939065:30939284:30939787:30939820,	30939066	30939284	30939203	30939204	Frame_Shift_Ins	-	C	p.P183fs
BLCA	TCGA-XF-A9SH-01	COL1A2	ENST00000473573.1,ENST00000297268.6	chr7	94045798:94045815:94047035:94047143:94047810:94047864,	94047036	94047143	94047132	94047132	Frame_Shift_Del	A	-	p.K654fs
BLCA	TCGA-XF-A9SI-01	INTS8	ENST00000520315.1,ENST00000523731.1,ENST00000523206.1,ENST00000447247.1,ENST00000520526.1	chr8	95871738:95871860:95877733:95877918:95878385:95878419,	95877734	95877918	95877773	95877773	Frame_Shift_Del	G	-	p.G706fs
BLCA	TCGA-XF-A9SI-01	INTS8	ENST00000343161.4,ENST00000524333.1	chr8	95871738:95871860:95877733:95877928:95878385:95878419,	95877734	95877928	95877773	95877773	Frame_Shift_Del	G	-	p.G706fs
BLCA	TCGA-XF-A9SK-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814820	214814820	Frame_Shift_Del	C	-	p.Q1047fs
BLCA	TCGA-XF-A9SM-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466662	109466665	Frame_Shift_Del	TTTA	-	p.FL547fs
BLCA	TCGA-XF-A9ST-01	PPM1G	ENST00000350803.4,ENST00000344034.4	chr2	27606818:27606959:27607539:27607955:27608613:27608746,	27607540	27607955	27607623	27607636	Frame_Shift_Del	GCTTGTCAGAGGCT	-	p.ASDKL244fs
BLCA	TCGA-XF-A9ST-01	PPM1G	ENST00000472077.1	chr2	27606818:27606959:27607539:27607634:27607841:27610025,	27607540	27607634	27607623	27607636	Frame_Shift_Del	GCTTGTCAGAGGCT	-	p.ASDKL244fs
BLCA	TCGA-XF-A9ST-01	ROBO4	ENST00000306534.3,ENST00000533054.1,ENST00000532216.1	chr11	124756359:124756718:124756872:124757109:124757253:124757395,	124756873	124757109	124757040	124757040	Frame_Shift_Del	G	-	p.P756fs
BLCA	TCGA-XF-A9ST-01	SLCO1C1	ENST00000266509.2,ENST00000545604.1,ENST00000540354.1,ENST00000381552.1	chr12	20848683:20848741:20852485:20852639:20854251:20854393,	20852486	20852639	20852615	20852615	Frame_Shift_Del	G	-	p.K35fs
BLCA	TCGA-XF-A9ST-01	SLC38A2	ENST00000256689.5,ENST00000547252.1	chr12	46761049:46761123:46764294:46764410:46764558:46764629,	46764295	46764410	46764395	46764395	Frame_Shift_Del	A	-	p.S72fs
BLCA	TCGA-XF-A9ST-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881488	48881489	Frame_Shift_Ins	-	AG	p.R71fs
BLCA	TCGA-XF-A9ST-01	MYO9A	ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000567560.1	chr15	72324834:72324929:72338064:72338975:72410020:72410109,	72338065	72338975	72338831	72338843	Frame_Shift_Del	ATAGCCCCAGGAT	-	p.YPGAI21fs
BLCA	TCGA-XF-A9ST-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171742	36171755	Frame_Shift_Del	GTTGGATCTGCCTT	-	p.RQIQP244fs
BLCA	TCGA-XF-A9SX-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93247438:93247535:93250956:93251064,	93247439	93247535	93247480	93247481	Frame_Shift_Ins	-	A	p.AK383fs
BLCA	TCGA-XF-A9SY-01	IQCB1	ENST00000393650.3	chr3	121514307:121514413:121515964:121516074:121518042:121518221,121508919:121509062:121515964:121516074:121518042:121518221,	121515965	121516074	121515999	121515999	Frame_Shift_Del	A	-	p.L281fs
BLCA	TCGA-XF-A9SY-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971055	21971056	Frame_Shift_Ins	-	CCGG	p.RG115fs
BLCA	TCGA-XF-A9SY-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971055	21971056	Frame_Shift_Ins	-	CCGG	p.RG115fs
BLCA	TCGA-XF-A9SY-01	TYK2	ENST00000525621.1,ENST00000264818.6,ENST00000524462.1,ENST00000529370.1	chr19	10475289:10475447:10475526:10475724:10476192:10476484,	10475527	10475724	10475559	10475559	Frame_Shift_Del	C	-	p.V393fs
BLCA	TCGA-XF-A9SZ-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126859151:126859274:126860222:126860612:126862309:126862470,	126860223	126860612	126860478	126860478	Frame_Shift_Del	T	-	p.L121fs
BLCA	TCGA-XF-A9SZ-01	ZFYVE19	ENST00000355341.4,ENST00000566407.1,ENST00000299173.10,ENST00000570108.1	chr15	41099989:41100066:41101316:41101438:41101605:41101656,	41101317	41101438	41101389	41101389	Frame_Shift_Del	G	-	p.G118fs
BLCA	TCGA-XF-A9SZ-01	ZFYVE19	ENST00000567756.1	chr15	41099989:41100066:41101353:41101438:41101605:41101656,	41101354	41101438	41101389	41101389	Frame_Shift_Del	G	-	p.G118fs
BLCA	TCGA-XF-A9SZ-01	COMMD4	ENST00000569245.1,ENST00000562610.1,ENST00000480484.1,ENST00000564815.1,ENST00000267935.8	chr15	75631604:75631685:75632042:75632219:75632305:75632386,	75632043	75632219	75632074	75632074	Frame_Shift_Del	G	-	p.V138fs
BLCA	TCGA-XF-A9SZ-01	COMMD4	ENST00000565834.1	chr15	75630986:75631026:75631325:75632219:75632305:75632414,	75631326	75632219	75632074	75632074	Frame_Shift_Del	G	-	p.V138fs
BLCA	TCGA-XF-A9T0-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824296	114824305	Frame_Shift_Del	TTAGAGCCAA	-	p.LALK309fs
BLCA	TCGA-XF-A9T2-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637515	176637516	Frame_Shift_Ins	-	A	p.N706fs
BLCA	TCGA-XF-A9T2-01	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1	chrX	41206111:41206265:41206564:41206704:41206892:41207168,	41206565	41206704	41206631	41206632	Frame_Shift_Ins	-	T	p.F613fs
BLCA	TCGA-XF-A9T3-01	DDX60L	ENST00000505890.1,ENST00000504793.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169341411:169341531:169342910:169343060:169343674:169343739,	169342911	169343060	169342991	169343007	Frame_Shift_Del	TTTTGCCTGAGGACGTT	-	p.TSSGKT767fs
BLCA	TCGA-XF-A9T4-01	HRAS	ENST00000493230.1,ENST00000417302.1,ENST00000462734.1,ENST00000397594.1	chr11	532728:532755:533276:533358:533452:533595,	533277	533358	533309	533309	Frame_Shift_Del	G	-	p.P167fs
BLCA	TCGA-XF-A9T6-01	TPR	ENST00000474852.1,ENST00000367478.4	chr1	186332473:186332577:186337017:186337114:186340101:186340175,	186337018	186337114	186337095	186337105	Frame_Shift_Del	TTTGTTCTTGT	-	p.TRTK114fs
BLCA	TCGA-XF-A9T6-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603086	95603087	Frame_Shift_Del	GG	-	p.T659fs
BLCA	TCGA-XF-A9T6-01	TUBGCP3	ENST00000375669.3,ENST00000261965.3,ENST00000464139.1	chr13	113201933:113202066:113202421:113202490:113208370:113208496,	113202422	113202490	113202484	113202484	Frame_Shift_Del	A	-	p.C325fs
BLCA	TCGA-XF-A9T8-01	TROAP	ENST00000547923.1,ENST00000257909.3	chr12	49724443:49724726:49724996:49725190:49725355:49725453,	49724997	49725190	49725148	49725149	Frame_Shift_Del	CA	-	p.T841fs
BLCA	TCGA-XF-AAME-01	CD74	ENST00000518797.1,ENST00000009530.7	chr5	149782166:149782188:149784242:149784330:149784647:149784725,149782683:149782875:149784242:149784330:149784647:149784743,	149784243	149784330	149784266	149784266	Frame_Shift_Del	T	-	p.K201fs
BLCA	TCGA-XF-AAMF-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1	chr1	17318980:17319076:17320123:17320330:17322470:17322659,	17320124	17320330	17320157	17320157	Frame_Shift_Del	G	-	p.P567fs
BLCA	TCGA-XF-AAMF-01	CCL25	ENST00000315626.4	chr19	8117650:8117706:8117883:8118006:8121035:8121121,	8117884	8118006	8117963	8117963	Frame_Shift_Del	G	-	p.V10fs
BLCA	TCGA-XF-AAMG-01	NOP58	ENST00000264279.5	chr2	203157499:203157626:203160396:203160560:203162101:203162236,	203160397	203160560	203160445	203160464	Frame_Shift_Del	TTGGAGCTGAAAAGGCACTT	-	p.LGAEKAL319fs
BLCA	TCGA-XF-AAMG-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577023	Frame_Shift_Ins	-	C	p.R306fs
BLCA	TCGA-XF-AAMH-01	AGFG1	ENST00000373671.3	chr2	228395806:228395926:228398264:228398474:228399623:228399741,228395806:228395926:228398264:228398474:228399560:228399593,228389477:228389631:228398264:228398474:228399560:228399593,	228398265	228398474	228398355	228398355	Frame_Shift_Del	C	-	p.S302fs
BLCA	TCGA-XF-AAMH-01	KANK1	ENST00000382303.1,ENST00000382286.1,ENST00000382293.3,ENST00000382297.2,ENST00000489369.1	chr9	734747:734835:738284:738504:740791:740934,	738285	738504	738496	738497	Frame_Shift_Ins	-	AGATG	p.-1183fs
BLCA	TCGA-XF-AAMJ-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637121	176637122	Frame_Shift_Ins	-	A	p.GK574fs
BLCA	TCGA-XF-AAMJ-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579581	7579582	Frame_Shift_Del	GC	-	p.LP35fs
BLCA	TCGA-XF-AAML-01	ADTRP	ENST00000379415.2	chr6	11768481:11768616:11778839:11779199:11803247:11803342,	11778840	11779199	11778916	11778917	Frame_Shift_Del	TG	-	p.Q26fs
BLCA	TCGA-XF-AAMT-01	DAGLB	ENST00000436575.1,ENST00000297056.6	chr7	6472467:6472590:6474392:6474651:6485583:6485735,6472467:6472590:6474392:6474651:6475992:6476164,	6474393	6474651	6474597	6474604	Frame_Shift_Del	AAGAGGGT	-	p.DPL156fs
BLCA	TCGA-XF-AAMW-01	ATG7	ENST00000354449.3	chr3	11421445:11421526:11468277:11468400:11596284:11596462,	11468278	11468400	11468324	11468324	Frame_Shift_Del	T	-	p.V668fs
BLCA	TCGA-XF-AAMX-01	SEC61A1	ENST00000243253.3,ENST00000464451.1,ENST00000481210.1	chr3	127774515:127774594:127775551:127775683:127778944:127779054,	127775552	127775683	127775579	127775580	Frame_Shift_Ins	-	TA	p.PI83fs
BLCA	TCGA-XF-AAMX-01	SLC26A7	ENST00000522181.1	chr8	92330443:92330608:92346522:92346675:92352631:92352779,	92346523	92346675	92346658	92346658	Frame_Shift_Del	C	-	p.P260fs
BLCA	TCGA-XF-AAMX-01	AOC3	ENST00000308423.2,ENST00000587330.1,ENST00000591562.1,ENST00000592999.1	chr17	41006553:41006750:41007460:41007590:41008291:41008318,	41007461	41007590	41007535	41007535	Frame_Shift_Del	G	-	p.W654fs
BLCA	TCGA-XF-AAMX-01	SMARCA4	ENST00000590574.1,ENST00000344626.4,ENST00000589677.1,ENST00000429416.3,ENST00000358026.2,ENST00000450717.3,ENST00000591545.1,ENST00000541122.2,ENST00000413806.3,ENST00000444061.3	chr19	11098341:11098600:11099992:11100119:11101825:11101999,	11099993	11100119	11100050	11100056	Frame_Shift_Del	GGCCGGG	-	p.LAG392fs
BLCA	TCGA-XF-AAMY-01	DCLK2	ENST00000411937.2,ENST00000506325.1,ENST00000296550.7	chr4	151114289:151114392:151119153:151119255:151124946:151125041,	151119154	151119255	151119187	151119187	Frame_Shift_Del	C	-	p.S299fs
BLCA	TCGA-XF-AAMZ-01	POC5	ENST00000428202.2,ENST00000508467.1,ENST00000380475.2	chr5	75001528:75001612:75003561:75003700:75013130:75013169,75001528:75001612:75003561:75003700:75008678:75008776,	75003562	75003700	75003590	75003590	Frame_Shift_Del	A	-	p.S65fs
BLCA	TCGA-XF-AAN0-01	KMT2D	ENST00000301067.7	chr12	49437650:49437781:49437982:49438087:49438185:49438305,	49437983	49438087	49438036	49438036	Frame_Shift_Del	T	-	p.K1712fs
BLCA	TCGA-XF-AAN5-01	DNAH7	ENST00000312428.6	chr2	196851789:196851917:196852680:196852953:196865427:196865607,	196852681	196852953	196852856	196852857	Frame_Shift_Del	CT	-	p.S484fs
BLCA	TCGA-XF-AAN5-01	ACTL6B	ENST00000485601.1	chr7	100253043:100253209:100253425:100253502:100253952:100253989,	100253426	100253502	100253457	100253457	Frame_Shift_Del	C	-	p.R24fs
BLCA	TCGA-XF-AAN7-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428930	44428931	Frame_Shift_Ins	-	T	p.V198fs
BLCA	TCGA-XF-AAN7-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000314490.11	chr2	121684936:121685042:121708818:121709021:121712820:121713006,	121708819	121709021	121708942	121708942	Frame_Shift_Del	G	-	p.M126fs
BLCA	TCGA-XF-AAN7-01	CNTN4	ENST00000418658.1,ENST00000397459.2,ENST00000427331.1,ENST00000358480.3,ENST00000397461.1,ENST00000448906.2,ENST00000430505.2,ENST00000427741.1	chr3	3072541:3072659:3076315:3076474:3078862:3079012,	3076316	3076474	3076443	3076443	Frame_Shift_Del	A	-	p.P637fs
BLCA	TCGA-XF-AAN7-01	HBEGF	ENST00000507104.1,ENST00000230990.6	chr5	139715475:139715612:139722219:139722397:139725495:139725669,	139722220	139722397	139722233	139722233	Frame_Shift_Del	C	-	p.A129fs
BLCA	TCGA-XF-AAN7-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171672	36171672	Frame_Shift_Del	G	-	p.P271fs
BLCA	TCGA-YC-A8S6-01	GRHL3	ENST00000236255.4	chr1	24645945:24646058:24657915:24658102:24661134:24661196,24646303:24646431:24657915:24658102:24661134:24661196,24646055:24646237:24657915:24658102:24661134:24661196,24649529:24649607:24657915:24658102:24661134:24661196,	24657916	24658102	24657946	24657947	Frame_Shift_Del	CC	-	p.P17fs
BLCA	TCGA-YC-A8S6-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101524	27101524	Frame_Shift_Del	C	-	p.S1602fs
BLCA	TCGA-YC-A8S6-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101524	27101524	Frame_Shift_Del	C	-	p.S1602fs
BLCA	TCGA-YC-A8S6-01	EEF1A1	ENST00000490569.1,ENST00000488500.1,ENST00000331523.2,ENST00000356303.2,ENST00000309268.6	chr6	74228920:74228951:74229059:74229239:74229605:74229700,	74229060	74229239	74229099	74229100	Frame_Shift_Ins	-	T	p.H95fs
BLCA	TCGA-YC-A9TC-01	VILL	ENST00000383759.2,ENST00000484717.1,ENST00000283713.6	chr3	38038973:38039176:38039580:38039659:38039756:38039855,	38039581	38039659	38039624	38039625	Frame_Shift_Ins	-	C	p.T270fs
BLCA	TCGA-YC-A9TC-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945594	6945594	Frame_Shift_Del	G	-	p.Q303fs
BLCA	TCGA-YC-A9TC-01	BFSP1	ENST00000544874.1,ENST00000536626.1,ENST00000377868.2,ENST00000377873.3	chr20	17474550:17475674:17477582:17477668:17479464:17479685,	17477583	17477668	17477654	17477654	Frame_Shift_Del	A	-	p.F324fs
BLCA	TCGA-YF-AA3L-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000474446.1	chr1	182848384:182848545:182849631:182849743:182850398:182850560,	182849632	182849743	182849729	182849729	Frame_Shift_Del	G	-	p.M870fs
BLCA	TCGA-YF-AA3L-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73646250:73646446:73649984:73650102:73651557:73652030,	73649985	73650102	73650043	73650043	Frame_Shift_Del	C	-	p.D235fs
BLCA	TCGA-YF-AA3L-01	FUCA2	ENST00000438118.2	chr6	143818525:143818634:143823068:143823259:143828373:143828561,	143823069	143823259	143823086	143823087	Frame_Shift_Del	AG	-	p.T379fs
BLCA	TCGA-YF-AA3L-01	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99106096:99106213:99109204:99109330:99116970:99117090,	99109205	99109330	99109219	99109219	Frame_Shift_Del	A	-	p.V948fs
BLCA	TCGA-YF-AA3M-01	NCOR1	ENST00000268712.3	chr17	16001680:16001810:16004563:16005071:16012099:16012226,	16004564	16005071	16004808	16004808	Frame_Shift_Del	C	-	p.A816fs
BLCA	TCGA-YF-AA3M-01	NCOR1	ENST00000395851.1,ENST00000395848.1	chr17	16001680:16001810:16004563:16005119:16012099:16012226,	16004564	16005119	16004808	16004808	Frame_Shift_Del	C	-	p.A816fs
BLCA	TCGA-YF-AA3M-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257318	9257318	Frame_Shift_Del	C	-	p.F1351fs
BLCA	TCGA-ZF-A9R0-01	TPR	ENST00000367478.4	chr1	186294928:186294986:186295235:186295367:186296591:186296792,	186295236	186295367	186295316	186295316	Frame_Shift_Del	T	-	p.M1981fs
BLCA	TCGA-ZF-A9R0-01	VSIG2	ENST00000326621.5,ENST00000403470.1	chr11	124619603:124619762:124620609:124620817:124621318:124621476,	124620610	124620817	124620739	124620740	Frame_Shift_Ins	-	G	p.T100fs
BLCA	TCGA-ZF-A9R1-01	CYP4B1	ENST00000371919.4	chr1	47264753:47264933:47276479:47276621:47278167:47278295,	47276480	47276621	47276490	47276491	Frame_Shift_Ins	-	G	p.TG64fs
BLCA	TCGA-ZF-A9R3-01	PINK1	ENST00000492302.1,ENST00000321556.4	chr1	20970982:20971165:20972052:20972216:20974997:20975125,	20972053	20972216	20972134	20972134	Frame_Shift_Del	G	-	p.L347fs
BLCA	TCGA-ZF-A9R3-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420203	49420204	Frame_Shift_Ins	-	C	p.G5182fs
BLCA	TCGA-ZF-A9R4-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11761030:11761133:11765279:11765438:11767087:11767230,	11765280	11765438	11765359	11765360	Frame_Shift_Ins	-	A	p.F1410fs
BLCA	TCGA-ZF-A9R9-01	WAC	ENST00000442148.1,ENST00000375664.4,ENST00000354911.4,ENST00000375646.1,ENST00000428935.1,ENST00000347934.4,ENST00000420266.1,ENST00000448193.1	chr10	28822926:28822963:28824490:28824686:28872327:28872365,	28824491	28824686	28824671	28824674	Frame_Shift_Del	AGAG	-	p.RE42fs
BLCA	TCGA-ZF-A9RC-01	GSTM2	ENST00000241337.4,ENST00000472225.2,ENST00000496578.3	chr1	110213911:110214004:110214094:110214205:110217368:110217905,	110214095	110214205	110214111	110214117	Frame_Shift_Del	TCATCGC	-	p.FIA158fs
BLCA	TCGA-ZF-A9RC-01	HNRNPD	ENST00000313899.7,ENST00000513584.1,ENST00000543098.1,ENST00000541060.1,ENST00000352301.4	chr4	83276456:83276554:83277689:83277836:83277948:83278048,	83277690	83277836	83277772	83277773	Frame_Shift_Ins	-	C	p.G306fs
BLCA	TCGA-ZF-A9RC-01	PDGFRL	ENST00000398074.3,ENST00000541323.1,ENST00000251630.6	chr8	17446976:17447274:17478559:17478711:17485995:17486289,	17478560	17478711	17478585	17478603	Frame_Shift_Del	CAGTTGACTCTGGTCAACT	-	p.QLTLVNS127fs
BLCA	TCGA-ZF-A9RC-01	PRPF19	ENST00000227524.4	chr11	60658218:60658735:60665317:60665423:60665572:60665743,	60665318	60665423	60665373	60665374	Frame_Shift_Ins	-	C	p.G454fs
BLCA	TCGA-ZF-A9RF-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2,ENST00000487682.1	chr1	156911163:156911225:156911655:156911781:156912481:156912572,	156911656	156911781	156911666	156911666	Frame_Shift_Del	T	-	p.T1148fs
BLCA	TCGA-ZF-A9RF-01	PRR12	ENST00000418929.2	chr19	50097953:50101270:50102528:50103195:50104747:50105175,	50102529	50103195	50102836	50102836	Frame_Shift_Del	C	-	p.T1329fs
BLCA	TCGA-ZF-A9RL-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.N103fs
BLCA	TCGA-ZF-A9RN-01	SLC12A7	ENST00000264930.5	chr5	1053463:1053597:1057585:1057764:1060458:1060566,	1057586	1057764	1057623	1057624	Frame_Shift_Ins	-	A	p.S997fs
BLCA	TCGA-ZF-A9RN-01	ADCY4	ENST00000310677.4,ENST00000554781.1,ENST00000554577.1,ENST00000396747.3,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24792549:24792660:24793267:24793405:24793512:24793597,	24793268	24793405	24793385	24793385	Frame_Shift_Del	G	-	p.P643fs
BLCA	TCGA-ZF-A9RN-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246940	56246941	Frame_Shift_Ins	-	A	p.L356fs
BLCA	TCGA-ZF-AA4R-01	PTMA	ENST00000409683.1	chr2	232576677:232576693:232577161:232577226:232577513:232577536,	232577162	232577226	232577170	232577171	Frame_Shift_Ins	-	AT	p.D77fs
BLCA	TCGA-ZF-AA4R-01	PTMA	ENST00000466801.1,ENST00000412128.1,ENST00000341369.7,ENST00000409115.3,ENST00000448874.1,ENST00000410064.1,ENST00000481928.1,ENST00000409321.1	chr2	232576677:232576693:232577152:232577226:232577513:232577536,	232577153	232577226	232577170	232577171	Frame_Shift_Ins	-	AT	p.D77fs
BLCA	TCGA-ZF-AA4R-01	MLXIPL	ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3	chr7	73011194:73011262:73011511:73012043:73013855:73013996,	73011512	73012043	73012016	73012016	Frame_Shift_Del	C	-	p.D367fs
BLCA	TCGA-ZF-AA4R-01	SUPT20H	ENST00000356185.3,ENST00000360252.4,ENST00000469488.2,ENST00000542180.1,ENST00000466563.2,ENST00000475892.1,ENST00000493537.1,ENST00000495071.2,ENST00000464744.1,ENST00000490716.1,ENST00000350612.6	chr13	37598287:37598330:37598476:37598579:37600340:37600373,37598287:37598330:37598476:37598579:37599456:37599574,	37598477	37598579	37598509	37598512	Frame_Shift_Del	TTGA	-	p.IK467fs
BLCA	TCGA-ZF-AA4R-01	EFCAB5	ENST00000320856.5,ENST00000394835.3,ENST00000419434.1	chr17	28414080:28414184:28417438:28417692:28418888:28419174,	28417439	28417692	28417687	28417688	Frame_Shift_Del	TC	-	p.I1311fs
BLCA	TCGA-ZF-AA4T-01	KAT7	ENST00000509773.1,ENST00000454930.2,ENST00000424009.2,ENST00000512616.1,ENST00000435742.2,ENST00000503935.2,ENST00000508594.1,ENST00000510819.1,ENST00000259021.4,ENST00000513171.1	chr17	47893164:47893275:47895181:47895373:47898698:47898788,	47895182	47895373	47895328	47895329	Frame_Shift_Ins	-	TGTT	p.-216fs
BLCA	TCGA-ZF-AA4V-01	NFASC	ENST00000539706.1,ENST00000404076.1,ENST00000367171.4,ENST00000404907.1,ENST00000360049.4,ENST00000513543.1,ENST00000512826.1	chr1	204945798:204945923:204948095:204948197:204948489:204948687,	204948096	204948197	204948193	204948194	Frame_Shift_Del	CA	-	p.T659fs
BLCA	TCGA-ZF-AA4V-01	ERLIN2	ENST00000519872.1,ENST00000523887.1,ENST00000276461.5	chr8	37594144:37594196:37595425:37595547:37597882:37597964,	37595426	37595547	37595525	37595528	Frame_Shift_Del	GGAC	-	p.GH29fs
BLCA	TCGA-ZF-AA4V-01	MRVI1	ENST00000541483.1,ENST00000423302.2	chr11	10653578:10653608:10673571:10673729:10711811:10711912,10653578:10653608:10673571:10673729:10715082:10715123,10655514:10655618:10673571:10673729:10715082:10715123,	10673572	10673729	10673582	10673582	Frame_Shift_Del	G	-	p.P72fs
BLCA	TCGA-ZF-AA4W-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762331	36762332	Frame_Shift_Ins	-	A	p.E755fs
BLCA	TCGA-ZF-AA4W-01	CCDC18	ENST00000401026.3,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93682192:93682303:93683294:93683426:93687165:93687300,	93683295	93683426	93683367	93683368	Frame_Shift_Ins	-	A	p.E634fs
BLCA	TCGA-ZF-AA4W-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227300012:227300123:227300371:227300614:227307504:227307638,	227300372	227300614	227300483	227300483	Frame_Shift_Del	T	-	p.K593fs
BLCA	TCGA-ZF-AA4W-01	CCDC80	ENST00000461431.1,ENST00000206423.3,ENST00000439685.2	chr3	112328824:112328928:112335556:112335705:112337814:112337951,	112335557	112335705	112335584	112335584	Frame_Shift_Del	T	-	p.K765fs
BLCA	TCGA-ZF-AA4W-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409fs
BLCA	TCGA-ZF-AA4W-01	ARHGEF28	ENST00000426542.2,ENST00000287898.5,ENST00000296794.6,ENST00000513042.2,ENST00000296799.4,ENST00000545377.1,ENST00000437974.1,ENST00000510312.2	chr5	73179591:73179709:73181674:73181929:73183427:73183504,	73181675	73181929	73181827	73181827	Frame_Shift_Del	A	-	p.K1070fs
BLCA	TCGA-ZF-AA4W-01	LARS	ENST00000545646.1,ENST00000274562.9,ENST00000510191.1,ENST00000514104.1,ENST00000504323.1,ENST00000394434.2	chr5	145522521:145522647:145522974:145523113:145523829:145523896,	145522975	145523113	145523014	145523014	Frame_Shift_Del	C	-	p.G613fs
BLCA	TCGA-ZF-AA4W-01	NRM	ENST00000462857.1	chr6	30657052:30657229:30657801:30658020:30658618:30658744,30655828:30656719:30657801:30658020:30658618:30658744,	30657802	30658020	30657966	30657967	Frame_Shift_Ins	-	G	p.L63fs
BLCA	TCGA-ZF-AA4W-01	NRM	ENST00000376420.5	chr6	30657052:30657229:30657823:30658020:30658618:30658744,30655828:30656719:30657823:30658020:30658618:30658744,	30657824	30658020	30657966	30657967	Frame_Shift_Ins	-	G	p.L63fs
BLCA	TCGA-ZF-AA4W-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54684548:54684727:54708206:54708399:54714358:54714428,	54708207	54708399	54708340	54708341	Frame_Shift_Ins	-	A	p.S228fs
BLCA	TCGA-ZF-AA4W-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425145	59425146	Frame_Shift_Ins	-	G	p.Q160fs
BLCA	TCGA-ZF-AA4W-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000443875.1,ENST00000402681.3,ENST00000541647.1	chr12	7170193:7170371:7171570:7171696:7172403:7172482,	7171571	7171696	7171653	7171653	Frame_Shift_Del	C	-	p.C158fs
BLCA	TCGA-ZF-AA4W-01	ANKRD13A	ENST00000550404.1,ENST00000553025.1,ENST00000261739.4	chr12	110449809:110449942:110450929:110451054:110454192:110454238,	110450930	110451054	110451041	110451041	Frame_Shift_Del	A	-	p.Q114fs
BLCA	TCGA-ZF-AA4W-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945674	6945674	Frame_Shift_Del	C	-	p.G276fs
BLCA	TCGA-ZF-AA4W-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436470	72436470	Frame_Shift_Del	G	-	p.E230fs
BLCA	TCGA-ZF-AA51-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156142616:156142797:156144612:156144731:156144876:156145023,	156144613	156144731	156144686	156144686	Frame_Shift_Del	C	-	p.F463fs
BLCA	TCGA-ZF-AA51-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148657026:148657136:148657312:148657467:148672759:148672903,	148657313	148657467	148657415	148657415	Frame_Shift_Del	G	-	p.W159fs
BLCA	TCGA-ZF-AA52-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
BLCA	TCGA-ZF-AA52-01	TRERF1	ENST00000541110.1	chr6	42227076:42227461:42230997:42231306:42232441:42232592,	42230998	42231306	42231008	42231009	Frame_Shift_Ins	-	G	p.R645fs
BLCA	TCGA-ZF-AA52-01	CLEC7A	ENST00000534609.1	chr12	10277895:10278047:10279169:10280444:10282578:10282681,	10279170	10280444	10280373	10280373	Frame_Shift_Del	C	-	p.V59fs
BLCA	TCGA-ZF-AA52-01	CLEC7A	ENST00000528799.1,ENST00000298523.5	chr12	10277895:10278047:10280345:10280444:10282578:10282681,	10280346	10280444	10280373	10280373	Frame_Shift_Del	C	-	p.V59fs
BLCA	TCGA-ZF-AA53-01	CSNK1A1	ENST00000515768.1,ENST00000377843.2	chr5	148904697:148904734:148929637:148929744:148930404:148930527,	148929638	148929744	148929709	148929709	Frame_Shift_Del	C	-	p.R53fs
BLCA	TCGA-ZF-AA53-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47034417:47034491:47035898:47035985:47038501:47038562,	47035899	47035985	47035961	47035962	Frame_Shift_Ins	-	A	p.N214fs
BLCA	TCGA-ZF-AA56-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981535	201981536	Frame_Shift_Ins	-	C	p.Q151fs
BLCA	TCGA-ZF-AA56-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44948987:44949175:44949967:44950109:44966654:44966781,	44949968	44950109	44950105	44950106	Frame_Shift_Ins	-	T	p.I1292fs
BLCA	TCGA-ZF-AA58-01	HEATR5B	ENST00000233099.5	chr2	37217790:37217942:37227728:37227956:37229448:37229715,	37227729	37227956	37227804	37227805	Frame_Shift_Del	CA	-	p.E1824fs
BLCA	TCGA-ZF-AA5H-01	PICALM	ENST00000530542.1,ENST00000356360.5,ENST00000393346.3	chr11	85694908:85695016:85701292:85701442:85707868:85707972,	85701293	85701442	85701319	85701320	Frame_Shift_Ins	-	T	p.R454fs
BLCA	TCGA-ZF-AA5H-01	PICALM	ENST00000526961.1,ENST00000526033.1	chr11	85694908:85695016:85701292:85701421:85707868:85707972,	85701293	85701421	85701319	85701320	Frame_Shift_Ins	-	T	p.R454fs
BLCA	TCGA-ZF-AA5N-01	AUNIP	ENST00000374298.3	chr1	26161512:26162337:26163903:26164045:26185770:26185903,	26163904	26164045	26163989	26163992	Frame_Shift_Del	CTTT	-	p.RK44fs
BLCA	TCGA-ZF-AA5N-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539279	187539300	Frame_Shift_Del	TTTCAACAATGAATGCCTCATA	-	p.YEAFIVEN2814fs
BLCA	TCGA-ZF-AA5N-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
CHOL	TCGA-4G-AAZO-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437802	52437802	Frame_Shift_Del	T	-	p.K453fs
CHOL	TCGA-4G-AAZO-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000427908.2	chr5	176737426:176737541:176738379:176738485:176738761:176738858,176737668:176737698:176738379:176738485:176738761:176738871,	176738380	176738485	176738408	176738408	Frame_Shift_Del	G	-	p.Q50fs
CHOL	TCGA-W5-AA2O-01	RERE	ENST00000476556.1,ENST00000337907.3,ENST00000377464.1,ENST00000400908.2	chr1	8414685:8415180:8415478:8415659:8416159:8416306,	8415479	8415659	8415615	8415616	Frame_Shift_Ins	-	G	p.V1511fs
CHOL	TCGA-W5-AA2G-01	NBEAL1	ENST00000449802.1	chr2	204016187:204016312:204022421:204022548:204030871:204031020,	204022422	204022548	204022462	204022462	Frame_Shift_Del	G	-	p.L1847fs
CHOL	TCGA-W5-AA31-01	VEZF1	ENST00000581208.1,ENST00000258963.3,ENST00000584396.1	chr17	56051119:56052261:56056512:56056674:56057963:56058147,	56056513	56056674	56056607	56056607	Frame_Shift_Del	C	-	p.Q345fs
CHOL	TCGA-W5-AA31-01	VEZF1	ENST00000581208.1,ENST00000258963.3,ENST00000584396.1	chr17	56051119:56052261:56056512:56056674:56057963:56058147,	56056513	56056674	56056609	56056610	Frame_Shift_Del	GC	-	p.QQ344fs
CHOL	TCGA-W5-AA39-01	PRDX1	ENST00000319248.8	chr1	45981325:45981479:45984609:45984726:45987500:45987526,	45984610	45984726	45984678	45984687	Frame_Shift_Del	GGGGCAGGGT	-	p.HPAP10fs
CHOL	TCGA-W5-AA39-01	CNN3	ENST00000370206.4,ENST00000474409.1,ENST00000545882.1,ENST00000538964.1,ENST00000415017.1	chr1	95367733:95367814:95368677:95368744:95368958:95369080,	95368678	95368744	95368720	95368720	Frame_Shift_Del	G	-	p.G68fs
CHOL	TCGA-W5-AA39-01	FCGR1B	ENST00000369178.4	chr1	120930038:120930293:120934380:120934606:120935447:120935468,	120934381	120934606	120934442	120934442	Frame_Shift_Del	T	-	p.E82fs
CHOL	TCGA-W5-AA39-01	FCGR1B	ENST00000471609.1,ENST00000369384.4,ENST00000472543.1	chr1	120930038:120930293:120934380:120934635:120935447:120935468,	120934381	120934635	120934442	120934442	Frame_Shift_Del	T	-	p.E82fs
CHOL	TCGA-W5-AA39-01	STK11IP	ENST00000295641.10,ENST00000456909.1	chr2	220473867:220473935:220474084:220474262:220476325:220476556,	220474085	220474262	220474091	220474091	Frame_Shift_Del	C	-	p.L645fs
CHOL	TCGA-W5-AA39-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000509063.1,ENST00000441319.1	chr4	74272367:74272478:74274310:74274522:74275071:74275204,	74274311	74274522	74274503	74274507	Frame_Shift_Del	GAAGA	-	p.EE155fs
CHOL	TCGA-W5-AA39-01	VPS41	ENST00000413141.1,ENST00000418457.2,ENST00000414632.1,ENST00000310301.4,ENST00000265745.9	chr7	38857416:38857482:38860802:38860865:38869853:38869928,	38860803	38860865	38860830	38860830	Frame_Shift_Del	A	-	p.F119fs
CHOL	TCGA-W5-AA39-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77425346:77426092:77450844:77451038:77471131:77471489,	77450845	77451038	77450866	77450885	Frame_Shift_Del	TACAAGGGTTCGGGTCCATA	-	p.PMDPNPCS1097fs
CHOL	TCGA-W5-AA39-01	ACADVL	ENST00000577857.1	chr17	7124263:7124377:7124856:7125001:7125270:7125275,7124108:7124149:7124856:7125001:7125270:7125275,	7124857	7125001	7124970	7124983	Frame_Shift_Del	GAAAGAAAAATACC	-	p.QKEKYL197fs
CHOL	TCGA-W5-AA39-01	ACADVL	ENST00000581378.1	chr17	7124246:7124377:7124837:7125001:7125270:7125275,	7124838	7125001	7124970	7124983	Frame_Shift_Del	GAAAGAAAAATACC	-	p.QKEKYL197fs
CHOL	TCGA-W5-AA39-01	ELP5	ENST00000570322.1,ENST00000396627.2,ENST00000573699.1,ENST00000574993.1,ENST00000354429.2,ENST00000570500.1,ENST00000573513.1,ENST00000576496.1,ENST00000574255.1,ENST00000356683.2,ENST00000396628.2,ENST00000573657.1	chr17	7155873:7155915:7156088:7156149:7156236:7156317,	7156089	7156149	7156115	7156124	Frame_Shift_Del	CTCTTGAAGG	-	p.LLKA41fs
CHOL	TCGA-W5-AA39-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40946631:40946686:40946789:40947400:40947478:40947539,	40946790	40947400	40946837	40946838	Frame_Shift_Ins	-	TC	p.L800fs
CHOL	TCGA-W5-AA39-01	DAZAP1	ENST00000589484.1	chr19	1422346:1422395:1428840:1428994:1429965:1429995,	1428841	1428994	1428934	1428956	Frame_Shift_Del	GCTGCCAATGGCTGGGCAGGCCA	-	p.AANGWAGQ214fs
CHOL	TCGA-WD-A7RX-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101387	27101394	Frame_Shift_Del	CCCTCTGC	-	p.PSA1557fs
CHOL	TCGA-ZH-A8Y2-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226923854	226923855	Frame_Shift_Ins	-	C	p.L436fs
CHOL	TCGA-ZH-A8Y2-01	SMARCD1	ENST00000551966.1	chr12	50481145:50481268:50482303:50482420:50483666:50483768,50480538:50480661:50482303:50482420:50483666:50483768,	50482304	50482420	50482343	50482359	Frame_Shift_Del	AAGTTCTCTTCCTTTTT	-	p.KFSSFF232fs
CHOL	TCGA-ZH-A8Y2-01	FBRSL1	ENST00000261673.6,ENST00000434748.2	chr12	133084741:133084936:133102319:133102409:133104538:133104574,	133102320	133102409	133102390	133102396	Frame_Shift_Del	CCCGGGA	-	p.SRD187fs
CHOL	TCGA-W5-AA38-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547680	165547680	Frame_Shift_Del	C	-	p.G381fs
CHOL	TCGA-W5-AA38-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42074970	42074970	Frame_Shift_Del	G	-	p.P230fs
CHOL	TCGA-W5-AA38-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2,ENST00000604860.1	chr15	25599499:25599573:25599674:25599830:25601038:25601128,	25599675	25599830	25599825	25599825	Frame_Shift_Del	A	-	p.F710fs
CHOL	TCGA-ZH-A8Y8-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3	chr15	43762055:43762264:43766870:43766965:43767762:43767892,	43766871	43766965	43766909	43766910	Frame_Shift_Ins	-	T	p.R376fs
CHOL	TCGA-ZH-A8Y8-01	PXMP4	ENST00000217398.3	chr20	32295294:32295775:32298360:32298579:32302479:32302542,	32298361	32298579	32298495	32298502	Frame_Shift_Del	ACCGTGCC	-	p.LARF78fs
CHOL	TCGA-ZH-A8Y8-01	PXMP4	ENST00000409299.3	chr20	32295294:32295775:32298360:32298559:32302479:32302542,	32298361	32298559	32298495	32298502	Frame_Shift_Del	ACCGTGCC	-	p.LARF78fs
CHOL	TCGA-W5-AA2X-01	CMBL	ENST00000506821.1,ENST00000296658.3	chr5	10288533:10288641:10290659:10290893:10307736:10307951,	10290660	10290893	10290721	10290724	Frame_Shift_Del	ATAT	-	p.IF51fs
CHOL	TCGA-YR-A95A-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101427	27101428	Frame_Shift_Ins	-	T	p.*1570fs
CHOL	TCGA-ZH-A8Y4-01	SLC25A33	ENST00000302692.6	chr1	9633403:9633470:9640011:9640292:9642356:9645237,	9640012	9640292	9640237	9640238	Frame_Shift_Ins	-	A	p.G237fs
CHOL	TCGA-ZH-A8Y4-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125234	47125235	Frame_Shift_Ins	-	A	p.P2012fs
CHOL	TCGA-ZH-A8Y4-01	TK2	ENST00000562484.2,ENST00000525974.1,ENST00000417693.3,ENST00000527284.1,ENST00000563369.2,ENST00000545043.2,ENST00000567357.1,ENST00000564917.1,ENST00000451102.2,ENST00000527800.1,ENST00000299697.7,ENST00000563478.1,ENST00000544898.1	chr16	66551691:66551780:66562896:66562970:66565282:66565372,	66562897	66562970	66562916	66562917	Frame_Shift_Ins	-	A	p.R186fs
CHOL	TCGA-ZH-A8Y5-01	WDR25	ENST00000335290.6	chr14	100842775:100842832:100847246:100848083:100934357:100934505,100842769:100842841:100847246:100848083:100934357:100934505,100842877:100843041:100847246:100848083:100934357:100934505,	100847247	100848083	100847912	100847916	Frame_Shift_Del	GTCTG	-	p.VSE217fs
CHOL	TCGA-ZH-A8Y5-01	WDR25	ENST00000335290.6	chr14	100842775:100842832:100847246:100848083:100934357:100934505,100842769:100842841:100847246:100848083:100934357:100934505,100842877:100843041:100847246:100848083:100934357:100934505,	100847247	100848083	100847918	100847924	Frame_Shift_Del	GTTTATT	-	p.EFI219fs
CHOL	TCGA-4G-AAZT-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980321	201980334	Frame_Shift_Del	CAGCTCGGAGGACT	-	p.YSSEDS19fs
CHOL	TCGA-4G-AAZT-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980321	201980334	Frame_Shift_Del	CAGCTCGGAGGACT	-	p.YSSEDS19fs
CHOL	TCGA-4G-AAZT-01	ICA1	ENST00000407906.1,ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000317367.5,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8196745:8196844:8198156:8198282:8257934:8258089,	8198157	8198282	8198250	8198251	Frame_Shift_Ins	-	T	p.I204fs
CHOL	TCGA-ZD-A8I3-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101384	27101394	Frame_Shift_Del	GGTCCCTCTGC	-	p.GPSA1556fs
CHOL	TCGA-ZD-A8I3-01	ANK2	ENST00000394537.3,ENST00000504415.1,ENST00000506722.1,ENST00000510275.2,ENST00000509550.1,ENST00000508007.1	chr4	114267055:114267178:114271383:114271405:114281978:114282053,114269431:114269464:114271383:114271405:114281978:114282053,	114271384	114271405	114271399	114271400	Frame_Shift_Ins	-	A	p.K1474fs
CHOL	TCGA-ZD-A8I3-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645255	70645259	Frame_Shift_Del	ACCCT	-	p.DP568fs
CHOL	TCGA-ZD-A8I3-01	TBKBP1	ENST00000361722.3	chr17	45785759:45785878:45786090:45786818:45787863:45789416,	45786091	45786818	45786129	45786130	Frame_Shift_Ins	-	C	p.P344fs
CHOL	TCGA-3X-AAVE-01	IFRD1	ENST00000466459.1	chr7	112101920:112101971:112102055:112102234:112108035:112108159,	112102056	112102234	112102177	112102178	Frame_Shift_Ins	-	A	p.V247fs
CHOL	TCGA-W5-AA36-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437677	52437678	Frame_Shift_Ins	-	T	p.G495fs
CHOL	TCGA-W5-AA36-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000553360.1,ENST00000395314.3,ENST00000459737.1,ENST00000554570.1,ENST00000554306.1,ENST00000395308.1,ENST00000395311.1	chr14	56125263:56125332:56126383:56126421:56128239:56128304,	56126384	56126421	56126409	56126415	Frame_Shift_Del	AATTATT	-	p.ELL996fs
CHOL	TCGA-W5-AA2Q-01	SEMA4G	ENST00000521006.1	chr10	102740924:102740986:102743061:102744114:102744246:102744547,	102743062	102744114	102743836	102743836	Frame_Shift_Del	A	-	p.E827fs
CHOL	TCGA-3X-AAVC-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931139	73931139	Frame_Shift_Del	T	-	p.Y391fs
CHOL	TCGA-3X-AAVC-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931139	73931139	Frame_Shift_Del	T	-	p.Y391fs
CESC	TCGA-JX-A3Q8-01	ANGPT1	ENST00000520052.1,ENST00000517746.1,ENST00000297450.3,ENST00000520734.1	chr8	108276448:108276579:108296909:108297076:108306163:108306265,	108296910	108297076	108297059	108297060	Frame_Shift_Ins	-	GA	p.G353fs
CESC	TCGA-C5-A7UE-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577801	14577802	Frame_Shift_Ins	-	A	p.N320fs
CESC	TCGA-C5-A2M2-01	BCL2L11	ENST00000308659.8,ENST00000393256.3	chr2	111881626:111881716:111907620:111907724:111911356:111911466,111881626:111881716:111907620:111907724:111921709:111921808,	111907621	111907724	111907704	111907704	Frame_Shift_Del	A	-	p.N160fs
CESC	TCGA-C5-A3HE-01	BNC2	ENST00000484726.1,ENST00000380672.4,ENST00000380666.2	chr9	16582980:16583083:16727794:16727995:16870643:16870704,16582980:16583083:16727794:16727995:16738357:16738483,	16727795	16727995	16727949	16727952	Frame_Shift_Del	TCTC	-	p.R58fs
CESC	TCGA-FU-A5XV-01	C9	ENST00000263408.4	chr5	39306718:39306894:39308331:39308460:39311238:39311479,	39308332	39308460	39308447	39308447	Frame_Shift_Del	T	-	p.D376fs
CESC	TCGA-C5-A1MN-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55651779	55651779	Frame_Shift_Del	C	-	p.R731fs
CESC	TCGA-C5-A2M1-01	CNOT8	ENST00000403027.2,ENST00000522644.1,ENST00000520472.1	chr5	154238198:154238361:154242766:154242955:154244751:154244800,154238211:154238328:154242766:154242955:154244751:154244800,154238964:154239056:154242766:154242955:154244751:154244800,154238248:154238376:154242766:154242955:154250220:154250264,154238248:154238376:154242766:154242955:154244751:154244800,	154242767	154242955	154242942	154242943	Frame_Shift_Ins	-	TTATA	p.A38fs
CESC	TCGA-C5-A2M1-01	CNOT8	ENST00000519394.1	chr5	154238248:154238376:154242771:154242955:154244751:154244800,	154242772	154242955	154242942	154242943	Frame_Shift_Ins	-	TTATA	p.A38fs
CESC	TCGA-EA-A5O9-01	COQ3	ENST00000254759.3,ENST00000369242.1	chr6	99825261:99825361:99828064:99828217:99831573:99831700,	99828065	99828217	99828199	99828200	Frame_Shift_Ins	-	A	p.Y85fs
CESC	TCGA-C5-A1M6-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580551	7580552	Frame_Shift_Ins	-	AG	p.I1376fs
CESC	TCGA-C5-A1BF-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540216	187540217	Frame_Shift_Ins	-	T	p.H2508fs
CESC	TCGA-IR-A3LC-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66188492:66188739:66190864:66191041:66199948:66200099,	66190865	66191041	66190982	66190983	Frame_Shift_Ins	-	A	p.R402fs
CESC	TCGA-Q1-A73P-01	GORASP1	ENST00000453680.1,ENST00000470910.1,ENST00000437458.1,ENST00000416741.1,ENST00000441302.2,ENST00000319283.3,ENST00000452389.2,ENST00000431601.1	chr3	39142513:39142593:39144168:39144372:39144963:39145002,	39144169	39144372	39144311	39144312	Frame_Shift_Ins	-	GCTT	p.L69fs
CESC	TCGA-EK-A2PL-01	HDDC2	ENST00000318787.9,ENST00000608461.1,ENST00000609477.1	chr6	125613986:125614055:125621683:125621805:125622994:125623083,	125621684	125621805	125621802	125621803	Frame_Shift_Del	CT	-	p.R29fs
CESC	TCGA-EA-A410-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12123569	12123570	Frame_Shift_Ins	-	A	p.E1182fs
CESC	TCGA-EA-A3QE-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910553	29910556	Frame_Shift_Del	TTTC	-	p.F32fs
CESC	TCGA-C5-A1MQ-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911899	29911900	Frame_Shift_Ins	-	C	p.K210fs
CESC	TCGA-EK-A2PL-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911899	29911900	Frame_Shift_Ins	-	C	p.K210fs
CESC	TCGA-EA-A5ZE-01	HLA-C	ENST00000376237.4	chr6	31238215:31238262:31238849:31239108:31239375:31239533,	31238850	31239108	31239049	31239050	Frame_Shift_Ins	-	C	p.A178fs
CESC	TCGA-EA-A5ZE-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000495835.1,ENST00000415537.1	chr6	31238215:31238262:31238849:31239125:31239375:31239533,	31238850	31239125	31239049	31239050	Frame_Shift_Ins	-	C	p.A178fs
CESC	TCGA-EA-A5ZE-01	HLA-C	ENST00000376237.4	chr6	31238215:31238262:31238849:31239108:31239375:31239533,	31238850	31239108	31239050	31239051	Frame_Shift_Ins	-	T	p.S177fs
CESC	TCGA-EA-A5ZE-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000495835.1,ENST00000415537.1	chr6	31238215:31238262:31238849:31239125:31239375:31239533,	31238850	31239125	31239050	31239051	Frame_Shift_Ins	-	T	p.S177fs
CESC	TCGA-EA-A78R-01	IDO1	ENST00000519154.1,ENST00000522495.1,ENST00000518804.1,ENST00000518237.1,ENST00000253513.7	chr8	39771407:39771528:39775393:39775489:39775606:39775657,	39775394	39775489	39775486	39775486	Frame_Shift_Del	G	-	p.K61fs
CESC	TCGA-BI-A0VS-01	IFNGR2	ENST00000545369.2,ENST00000290219.6,ENST00000405436.1,ENST00000381995.1	chr21	34799190:34799339:34804483:34804643:34805020:34805178,	34804484	34804643	34804527	34804528	Frame_Shift_Ins	-	AA	p.P204fs
CESC	TCGA-HM-A4S6-01	IKZF2	ENST00000374319.4,ENST00000421754.2,ENST00000451136.2,ENST00000433134.1	chr2	213914573:213914604:213921634:213921823:214012431:214012536,	213921635	213921823	213921756	213921757	Frame_Shift_Ins	-	T	p.D69fs
CESC	TCGA-HM-A4S6-01	IKZF2	ENST00000434687.1,ENST00000431520.1,ENST00000342002.2,ENST00000413091.3,ENST00000457361.1	chr2	213914573:213914604:213921556:213921823:214012431:214012536,	213921557	213921823	213921756	213921757	Frame_Shift_Ins	-	T	p.D69fs
CESC	TCGA-EA-A410-01	IL4I1	ENST00000341114.3,ENST00000601717.1,ENST00000595948.1,ENST00000391826.2	chr19	50397530:50397726:50398324:50398437:50399071:50399310,	50398325	50398437	50398358	50398359	Frame_Shift_Ins	-	C	p.E133fs
CESC	TCGA-EA-A410-01	INTS12	ENST00000451321.2,ENST00000394735.1,ENST00000420368.2,ENST00000340139.5,ENST00000503746.1	chr4	106614557:106614643:106616672:106616825:106621006:106621171,	106616673	106616825	106616790	106616791	Frame_Shift_Ins	-	T	p.N64fs
CESC	TCGA-C5-A7CH-01	KDM3A	ENST00000312912.5,ENST00000542128.1,ENST00000409556.1,ENST00000409064.1	chr2	86705730:86705858:86707289:86707485:86709052:86709225,	86707290	86707485	86707395	86707395	Frame_Shift_Del	G	-	p.G808fs
CESC	TCGA-C5-A1M6-01	KPNA6	ENST00000471599.1	chr1	32573658:32573735:32620188:32620322:32622453:32622528,	32620189	32620322	32620238	32620238	Frame_Shift_Del	G	-	p.N24fs
CESC	TCGA-C5-A1MK-01	LRP6	ENST00000543091.1,ENST00000261349.4,ENST00000538239.1	chr12	12288108:12288234:12291258:12291468:12300299:12300490,	12291259	12291468	12291357	12291358	Frame_Shift_Ins	-	T	p.I1170fs
CESC	TCGA-EK-A2H0-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000463959.1	chr1	236992488:236992568:236995265:236995378:236998846:236998987,	236995266	236995378	236995308	236995309	Frame_Shift_Ins	-	CATTT	p.G375fs
CESC	TCGA-EA-A410-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.N614fs
CESC	TCGA-C5-A1MH-01	NFE2L2	ENST00000423513.1,ENST00000446151.2,ENST00000397063.4	chr2	178097977:178098067:178098732:178098999:178129259:178129387,178097977:178098067:178098732:178098999:178128130:178128182,	178098733	178098999	178098900	178098900	Frame_Shift_Del	C	-	p.E49fs
CESC	TCGA-EK-A2R9-01	NPL	ENST00000488424.1,ENST00000367554.3,ENST00000367553.1,ENST00000463899.1,ENST00000258317.2	chr1	182787947:182787994:182791249:182791334:182794915:182794955,	182791250	182791334	182791267	182791268	Frame_Shift_Ins	-	A	p.T227fs
CESC	TCGA-FU-A2QG-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637930	176637930	Frame_Shift_Del	G	-	p.E844fs
CESC	TCGA-EK-A3GN-01	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36270034	36270034	Frame_Shift_Del	C	-	p.P393fs
CESC	TCGA-JW-A5VH-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000507921.1,ENST00000414217.1	chr5	102489551:102489638:102490373:102490449:102490537:102490647,	102490374	102490449	102490374	102490375	Frame_Shift_Ins	-	T	p.D408fs
CESC	TCGA-EA-A410-01	PRDM15	ENST00000449395.1	chr21	43248676:43248689:43254613:43254673:43255545:43255627,43248521:43248637:43254613:43254673:43255545:43255627,	43254614	43254673	43254644	43254645	Frame_Shift_Ins	-	C	p.P465fs
CESC	TCGA-EA-A556-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685305	89685306	Frame_Shift_Ins	-	A	p.Y68fs
CESC	TCGA-EA-A410-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630642	158630643	Frame_Shift_Del	TT	-	p.K23fs
CESC	TCGA-FU-A40J-01	RNF44	ENST00000274811.4,ENST00000537487.1,ENST00000513029.1	chr5	175955958:175956091:175956288:175956388:175956523:175956645,	175956289	175956388	175956299	175956299	Frame_Shift_Del	T	-	p.K409fs
CESC	TCGA-FU-A23L-01	RPS6KA1	ENST00000374163.1,ENST00000530003.1,ENST00000526792.1,ENST00000531382.1,ENST00000374168.2,ENST00000374166.4,ENST00000374162.2	chr1	26898339:26898416:26898666:26898784:26899714:26899852,	26898667	26898784	26898762	26898763	Frame_Shift_Del	AC	-	p.T652fs
CESC	TCGA-DS-A3LQ-01	RUNX2	ENST00000371436.6,ENST00000541979.1,ENST00000371432.3	chr6	45459677:45459851:45479982:45480144:45514563:45514946,	45479983	45480144	45480078	45480079	Frame_Shift_Ins	-	C	p.L389fs
CESC	TCGA-C5-A1ML-01	SEPT2	ENST00000360051.3,ENST00000391973.2,ENST00000482304.1,ENST00000441533.1,ENST00000428524.1,ENST00000401990.1,ENST00000457335.1,ENST00000402092.2,ENST00000473479.1,ENST00000436795.1,ENST00000437066.1,ENST00000391971.2,ENST00000420786.1,ENST00000467971.1,ENST00000475474.1,ENST00000366210.2,ENST00000434955.1,ENST00000449239.1,ENST00000445030.1	chr2	242254861:242255025:242265407:242265528:242274540:242274561,242255373:242255397:242265407:242265528:242274540:242274561,242263630:242263656:242265407:242265528:242274540:242274561,	242265408	242265528	242265494	242265495	Frame_Shift_Ins	-	A	p.G34fs
CESC	TCGA-C5-A1ML-01	SEPT2	ENST00000443492.1	chr2	242263630:242263656:242265381:242265528:242274540:242274561,	242265382	242265528	242265494	242265495	Frame_Shift_Ins	-	A	p.G34fs
CESC	TCGA-DG-A2KL-01	SLC47A2	ENST00000467609.1	chr17	19583264:19583352:19584679:19584983:19605917:19605987,	19584680	19584983	19584766	19584767	Frame_Shift_Ins	-	C	p.L471fs
CESC	TCGA-Q1-A6DT-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000340595.3,ENST00000351898.6	chr4	72352664:72352735:72363217:72363409:72397778:72397892,	72363218	72363409	72363244	72363245	Frame_Shift_Ins	-	T	p.L668fs
CESC	TCGA-C5-A1ME-01	SLFN5	ENST00000299977.4	chr17	33587989:33588115:33591201:33591922:33592090:33593379,	33591202	33591922	33591389	33591390	Frame_Shift_Ins	-	A	p.L442fs
CESC	TCGA-EK-A2H1-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.K172fs
CESC	TCGA-EA-A5ZE-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515398	183515399	Frame_Shift_Ins	-	T	p.D845fs
CESC	TCGA-EA-A410-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508008	158508009	Frame_Shift_Ins	-	C	p.P1113fs
CESC	TCGA-BI-A20A-01	TACC3	ENST00000484651.1,ENST00000485989.2,ENST00000466077.1,ENST00000313288.4	chr4	1732613:1732689:1732898:1733028:1736999:1737052,	1732899	1733028	1732898	1732899	Frame_Shift_Ins	-	GAGA	p.A490fs
CESC	TCGA-EA-A410-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181813	100181814	Frame_Shift_Ins	-	A	p.S144fs
CESC	TCGA-FU-A770-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099023	133099024	Frame_Shift_Ins	-	C	p.R158fs
CESC	TCGA-IR-A3LB-01	TP53BP1	ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3,ENST00000476454.1,ENST00000411772.1	chr15	43699413:43699768:43700140:43700286:43701094:43701294,	43700141	43700286	43700219	43700219	Frame_Shift_Del	G	-	p.L1890fs
CESC	TCGA-Q1-A73R-01	TP73	ENST00000378290.4,ENST00000378295.4,ENST00000603364.1,ENST00000604074.1,ENST00000354437.4,ENST00000357733.3,ENST00000346387.4,ENST00000378285.1,ENST00000604479.1,ENST00000378288.4,ENST00000603362.1,ENST00000378280.1	chr1	3638584:3638771:3639917:3640033:3643678:3643788,	3639918	3640033	3639972	3639973	Frame_Shift_Ins	-	GTAT	p.D227fs
CESC	TCGA-EK-A2RN-01	TTYH1	ENST00000425969.1	chr19	54926780:54926852:54930301:54930480:54932450:54932517,54926780:54926852:54930301:54930480:54933363:54933422,	54930302	54930480	54930395	54930395	Frame_Shift_Del	C	-	p.E76fs
CESC	TCGA-EA-A410-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923715	158923715	Frame_Shift_Del	C	-	p.L1009fs
CESC	TCGA-EK-A2R8-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10084457:10084547:10085163:10085729:10090658:10090779,	10085164	10085729	10085617	10085617	Frame_Shift_Del	G	-	p.D508fs
CESC	TCGA-EA-A410-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42033611:42033795:42042899:42043086:42046726:42046895,	42042900	42043086	42042909	42042910	Frame_Shift_Ins	-	AA	p.L262fs
CESC	TCGA-DS-A0VM-01	YWHAZ	ENST00000457309.1	chr8	101937149:101937267:101960823:101961128:101965496:101965569,101937149:101937267:101960823:101961128:101964156:101964197,101937149:101937267:101960823:101961128:101965077:101965111,	101960824	101961128	101960892	101960893	Frame_Shift_Ins	-	T	p.Q75fs
CESC	TCGA-DS-A0VM-01	YWHAZ	ENST00000395948.2	chr8	101937149:101937267:101960823:101960960:101965077:101965111,	101960824	101960960	101960892	101960893	Frame_Shift_Ins	-	T	p.Q75fs
CESC	TCGA-JW-A5VH-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157710	145157710	Frame_Shift_Del	G	-	p.K349fs
CESC	TCGA-EA-A410-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830806	72830807	Frame_Shift_Ins	-	C	p.G1926fs
CESC	TCGA-JW-A5VI-01	ZNF791	ENST00000343325.4	chr19	12721771:12721896:12734513:12734640:12735463:12735524,	12734514	12734640	12734618	12734619	Frame_Shift_Ins	-	T	p.K37fs
CESC	TCGA-DG-A2KH-01	ZRANB2	ENST00000370920.3,ENST00000254821.6	chr1	71538154:71538231:71542477:71542560:71544139:71544248,	71542478	71542560	71542532	71542533	Frame_Shift_Ins	-	T	p.S82fs
CESC	TCGA-EA-A3HU-01	ALG6	ENST00000603108.1,ENST00000371108.4,ENST00000263440.4	chr1	63894403:63894472:63894598:63894797:63902493:63902804,	63894599	63894797	63894697	63894698	Frame_Shift_Del	AA	-	p.K412fs
CESC	TCGA-EA-A3HU-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30610544:30610788:30613671:30613751:30613843:30613886,	30613672	30613751	30613720	30613721	Frame_Shift_Ins	-	G	p.V341fs
CESC	TCGA-EA-A3HU-01	CLCNKA	ENST00000464764.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4,ENST00000495784.1	chr1	16348546:16348558:16349107:16349214:16350294:16350409,	16349108	16349214	16349179	16349179	Frame_Shift_Del	G	-	p.G23fs
CESC	TCGA-EA-A3HU-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.T118fs
CESC	TCGA-IR-A3LK-01	GLI1	ENST00000546141.1,ENST00000543426.1,ENST00000228682.2,ENST00000528467.1	chr12	57861115:57861280:57861776:57862007:57863213:57863481,	57861777	57862007	57861878	57861878	Frame_Shift_Del	G	-	p.T394fs
CESC	TCGA-EA-A3HU-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682289	85682290	Frame_Shift_Ins	-	C	p.V123fs
CESC	TCGA-EK-A2PG-01	HDAC9	ENST00000456174.2,ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000405010.3,ENST00000523867.1	chr7	18633530:18633652:18674249:18674365:18684293:18684416,18668972:18669104:18674249:18674365:18684293:18684416,	18674250	18674365	18674294	18674295	Frame_Shift_Ins	-	CAAA	p.N283fs
CESC	TCGA-EA-A3HU-01	MEF2D	ENST00000464356.2,ENST00000340875.5	chr1	156449377:156449588:156450434:156450569:156452228:156452432,	156450435	156450569	156450503	156450503	Frame_Shift_Del	G	-	p.Q109fs
CESC	TCGA-DR-A0ZM-01	OSTC	ENST00000361564.4	chr4	109576719:109576813:109578605:109578803:109588402:109588551,	109578606	109578803	109578771	109578771	Frame_Shift_Del	C	-	p.F133fs
CESC	TCGA-EK-A3GK-01	PARP8	ENST00000505697.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50125725:50125795:50128614:50128688:50129812:50129882,	50128615	50128688	50128632	50128632	Frame_Shift_Del	A	-	p.K751fs
CESC	TCGA-IR-A3LH-01	PARPBP	ENST00000543784.1	chr12	102547646:102547754:102558215:102558386:102559506:102559661,102517765:102517819:102558215:102558386:102559506:102559661,	102558216	102558386	102558365	102558366	Frame_Shift_Ins	-	A	p.Q216fs
CESC	TCGA-EA-A3HU-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422305	229422305	Frame_Shift_Del	A	-	p.K37fs
CESC	TCGA-IR-A3LK-01	RARB	ENST00000480001.1	chr3	25622036:25622213:25636010:25636169:25637910:25637946,	25636011	25636169	25636104	25636104	Frame_Shift_Del	G	-	p.S369fs
CESC	TCGA-JW-A5VL-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152315324:152315424:152316513:152316633:152317651:152317803,	152316514	152316633	152316615	152316616	Frame_Shift_Ins	-	A	p.M1019fs
CESC	TCGA-JX-A3Q0-01	SLC17A2	ENST00000265425.3,ENST00000360488.3,ENST00000377850.3	chr6	25915963:25916096:25916912:25917074:25917196:25917311,	25916913	25917074	25916994	25916995	Frame_Shift_Ins	-	A	p.S284fs
CESC	TCGA-EA-A3HU-01	STOX2	ENST00000506529.1	chr4	184931925:184932576:184932739:184932788:184938241:184938531,	184932740	184932788	184932745	184932746	Frame_Shift_Ins	-	A	p.*865fs
CESC	TCGA-EA-A3HU-01	TMTC3	ENST00000266712.6	chr12	88584229:88584399:88586380:88586607:88588614:88593664,	88586381	88586607	88586525	88586525	Frame_Shift_Del	A	-	p.N619fs
CESC	TCGA-DR-A0ZM-01	UVRAG	ENST00000356136.3,ENST00000528420.1	chr11	75572790:75572825:75590922:75591084:75599872:75599947,	75590923	75591084	75591018	75591018	Frame_Shift_Del	G	-	p.N123fs
CESC	TCGA-EK-A3GK-01	ZNF397	ENST00000589420.1,ENST00000261333.6	chr18	32823115:32823257:32825225:32825315:32834195:32834366,	32825226	32825315	32825269	32825270	Frame_Shift_Ins	-	T	p.E200fs
CHOL	TCGA-ZH-A8Y4-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125234	47125235	Frame_Shift_Ins	-	A	p.L2012fs
CHOL	TCGA-ZH-A8Y4-01	SLC25A33	ENST00000302692.6	chr1	9633403:9633470:9640011:9640292:9642356:9645237,	9640012	9640292	9640237	9640238	Frame_Shift_Ins	-	A	p.L236fs
CHOL	TCGA-4G-AAZO-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437802	52437802	Frame_Shift_Del	T	-	p.E454fs
CHOL	TCGA-4G-AAZO-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437804	52437805	Frame_Shift_Del	TG	-	p.453_453del
CHOL	TCGA-ZD-A8I3-01	ANK2	ENST00000394537.3,ENST00000504415.1,ENST00000506722.1,ENST00000510275.2,ENST00000509550.1,ENST00000508007.1	chr4	114267055:114267178:114271383:114271405:114281978:114282053,114269431:114269464:114271383:114271405:114281978:114282053,	114271384	114271405	114271399	114271400	Frame_Shift_Ins	-	A	p.E1474fs
CHOL	TCGA-ZD-A8I3-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645255	70645259	Frame_Shift_Del	ACCCT	-	p.568_569del
CHOL	TCGA-W5-AA2X-01	CMBL	ENST00000506821.1,ENST00000296658.3	chr5	10288533:10288641:10290659:10290893:10307736:10307951,	10290660	10290893	10290721	10290724	Frame_Shift_Del	ATAT	-	p.51_52del
CHOL	TCGA-W5-AA38-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2,ENST00000604860.1	chr15	25599499:25599573:25599674:25599830:25601038:25601128,	25599675	25599830	25599825	25599825	Frame_Shift_Del	A	-	p.V714fs
CHOL	TCGA-ZH-A8Y2-01	FBRSL1	ENST00000261673.6,ENST00000434748.2	chr12	133084741:133084936:133102319:133102409:133104538:133104574,	133102320	133102409	133102390	133102396	Frame_Shift_Del	CCCGGGA	-	p.187_189del
CHOL	TCGA-ZH-A8Y2-01	SMARCD1	ENST00000551966.1	chr12	50481145:50481268:50482303:50482420:50483666:50483768,50480538:50480661:50482303:50482420:50483666:50483768,	50482304	50482420	50482343	50482359	Frame_Shift_Del	AAGTTCTCTTCCTTTTT	-	p.231_237del
CHOL	TCGA-3X-AAVE-01	IFRD1	ENST00000466459.1	chr7	112101920:112101971:112102055:112102234:112108035:112108159,	112102056	112102234	112102177	112102178	Frame_Shift_Ins	-	A	p.A247fs
CHOL	TCGA-YR-A95A-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101427	27101428	Frame_Shift_Ins	-	T	p.S1570fs
CHOL	TCGA-ZH-A8Y8-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3	chr15	43762055:43762264:43766870:43766965:43767762:43767892,	43766871	43766965	43766909	43766910	Frame_Shift_Ins	-	T	p.I381fs
CHOL	TCGA-ZH-A8Y8-01	PXMP4	ENST00000217398.3	chr20	32295294:32295775:32298360:32298579:32302479:32302542,	32298361	32298579	32298495	32298502	Frame_Shift_Del	ACCGTGCC	-	p.79_81del
CHOL	TCGA-ZH-A8Y8-01	PXMP4	ENST00000409299.3	chr20	32295294:32295775:32298360:32298559:32302479:32302542,	32298361	32298559	32298495	32298502	Frame_Shift_Del	ACCGTGCC	-	p.79_81del
CHOL	TCGA-W5-AA39-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40946631:40946686:40946789:40947400:40947478:40947539,	40946790	40947400	40946837	40946838	Frame_Shift_Ins	-	TC	p.F800fs
CHOL	TCGA-W5-AA39-01	STK11IP	ENST00000295641.10,ENST00000456909.1	chr2	220473867:220473935:220474084:220474262:220476325:220476556,	220474085	220474262	220474091	220474091	Frame_Shift_Del	C	-	p.L655fs
CHOL	TCGA-W5-AA39-01	DAZAP1	ENST00000589484.1	chr19	1422346:1422395:1428840:1428994:1429965:1429995,	1428841	1428994	1428934	1428956	Frame_Shift_Del	GCTGCCAATGGCTGGGCAGGCCA	-	p.213_221del
CHOL	TCGA-W5-AA39-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000509063.1,ENST00000441319.1	chr4	74272367:74272478:74274310:74274522:74275071:74275204,	74274311	74274522	74274503	74274507	Frame_Shift_Del	GAAGA	-	p.154_156del
CHOL	TCGA-W5-AA39-01	FCGR1B	ENST00000369178.4	chr1	120930038:120930293:120934380:120934606:120935447:120935468,	120934381	120934606	120934442	120934442	Frame_Shift_Del	T	-	p.Y83fs
CHOL	TCGA-W5-AA39-01	FCGR1B	ENST00000471609.1,ENST00000369384.4,ENST00000472543.1	chr1	120930038:120930293:120934380:120934635:120935447:120935468,	120934381	120934635	120934442	120934442	Frame_Shift_Del	T	-	p.Y83fs
CHOL	TCGA-W5-AA39-01	VPS41	ENST00000413141.1,ENST00000418457.2,ENST00000414632.1,ENST00000310301.4,ENST00000265745.9	chr7	38857416:38857482:38860802:38860865:38869853:38869928,	38860803	38860865	38860830	38860830	Frame_Shift_Del	A	-	p.H120fs
CHOL	TCGA-W5-AA39-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77425346:77426092:77450844:77451038:77471131:77471489,	77450845	77451038	77450866	77450885	Frame_Shift_Del	TACAAGGGTTCGGGTCCATA	-	p.1098_1104del
CHOL	TCGA-W5-AA39-01	PRDX1	ENST00000319248.8	chr1	45981325:45981479:45984609:45984726:45987500:45987526,	45984610	45984726	45984678	45984687	Frame_Shift_Del	GGGGCAGGGT	-	p.10_13del
CHOL	TCGA-W5-AA39-01	TGFBR2	ENST00000359013.4	chr3	30648092:30648469:30664690:30664765:30686238:30686407,	30664691	30664765	30664759	30664775	Frame_Shift_Del	AGACATAGTAAAGTATC	-	p.54_57del
CHOL	TCGA-W5-AA39-01	ACADVL	ENST00000577857.1	chr17	7124263:7124377:7124856:7125001:7125270:7125275,7124108:7124149:7124856:7125001:7125270:7125275,	7124857	7125001	7124970	7124983	Frame_Shift_Del	GAAAGAAAAATACC	-	p.220_224del
CHOL	TCGA-W5-AA39-01	ACADVL	ENST00000581378.1	chr17	7124246:7124377:7124837:7125001:7125270:7125275,	7124838	7125001	7124970	7124983	Frame_Shift_Del	GAAAGAAAAATACC	-	p.220_224del
CHOL	TCGA-W5-AA39-01	STK11IP	ENST00000295641.10,ENST00000456909.1	chr2	220473867:220473935:220474084:220474262:220476325:220476556,	220474085	220474262	220474091	220474092	Frame_Shift_Del	CT	-	p.655_656del
CHOL	TCGA-W5-AA39-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36758198:36758310:36759451:36759536:36762183:36762371,	36759452	36759536	36759442	36759456	Frame_Shift_Del	TCAATTTTAGGAGAA	-	p.677_678del
CHOL	TCGA-W5-AA39-01	SENP2	ENST00000413407.1,ENST00000459883.1,ENST00000473760.1,ENST00000545472.1,ENST00000427465.2,ENST00000296257.5	chr3	185327034:185327138:185329438:185329533:185330394:185330446,	185329439	185329533	185329428	185329449	Frame_Shift_Del	GTGTTTCTAAGTTCTCAAAGAA	-	p.241_244del
CHOL	TCGA-4G-AAZT-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980321	201980334	Frame_Shift_Del	CAGCTCGGAGGACT	-	p.19_23del
CHOL	TCGA-4G-AAZT-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980321	201980334	Frame_Shift_Del	CAGCTCGGAGGACT	-	p.19_23del
CHOL	TCGA-3X-AAVC-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931139	73931139	Frame_Shift_Del	T	-	p.Y391X
CHOL	TCGA-3X-AAVC-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931139	73931139	Frame_Shift_Del	T	-	p.Y391X
CHOL	TCGA-WD-A7RX-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101387	27101394	Frame_Shift_Del	CCCTCTGC	-	p.1556_1559del
BLCA	TCGA-BL-A0C8-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431511	36431517	Frame_Shift_Del	CCAGCTG	-	p.T395fs
BLCA	TCGA-BL-A0C8-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099187	56099187	Frame_Shift_Del	T	-	p.K25fs
BLCA	TCGA-BL-A0C8-01	SLMAP	ENST00000417128.1,ENST00000295952.3,ENST00000428312.1,ENST00000449503.2,ENST00000416658.1,ENST00000295951.3,ENST00000495364.1,ENST00000461354.1,ENST00000459654.1	chr3	57882599:57882659:57893610:57893733:57894802:57894877,	57893611	57893733	57893702	57893702	Frame_Shift_Del	A	-	p.R514fs
BLCA	TCGA-BL-A13I-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094409	27094410	Frame_Shift_Del	AA	-	p.T1039fs
BLCA	TCGA-BL-A3JM-01	SPTBN4	ENST00000352632.3,ENST00000392025.1,ENST00000598249.1,ENST00000597389.1	chr19	41075562:41075632:41076341:41076634:41077924:41078098,	41076342	41076634	41076449	41076450	Frame_Shift_Ins	-	A	p.P2378fs
BLCA	TCGA-BT-A20N-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652875	55652876	Frame_Shift_Ins	-	T	p.K365fs
BLCA	TCGA-BT-A20Q-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981471:201981564:201981767:201981887:201982074:201982164,	201981768	201981887	201981870	201981871	Frame_Shift_Ins	-	T	p.S194fs
BLCA	TCGA-BT-A20R-01	ARHGAP27	ENST00000442348.1,ENST00000532891.2,ENST00000376922.2,ENST00000532038.1,ENST00000531735.1,ENST00000455881.1,ENST00000428638.1,ENST00000528384.1	chr17	43473428:43473483:43473572:43473650:43473852:43473951,	43473573	43473650	43473589	43473589	Frame_Shift_Del	G	-	p.R404fs
BLCA	TCGA-BT-A20R-01	ARHGAP27	ENST00000581638.1	chr17	43473428:43473483:43473572:43473951:43474033:43474136,	43473573	43473951	43473589	43473589	Frame_Shift_Del	G	-	p.R404fs
BLCA	TCGA-BT-A2LB-01	CCNY	ENST00000339497.5,ENST00000374706.1,ENST00000265375.9,ENST00000497692.1,ENST00000465416.1,ENST00000374704.4	chr10	35819123:35819171:35841946:35842113:35854950:35855056,	35841947	35842113	35842099	35842100	Frame_Shift_Del	CA	-	p.I244fs
BLCA	TCGA-BT-A2LB-01	NFE2L3	ENST00000056233.3	chr7	26217622:26217742:26223320:26223404:26224152:26226745,	26223321	26223404	26223328	26223340	Frame_Shift_Del	TGAATGGGACAGA	-	p.L253fs
BLCA	TCGA-BT-A2LD-01	ZNF341	ENST00000497876.1,ENST00000342427.2,ENST00000375200.1	chr20	32369096:32369193:32371537:32371670:32376668:32376780,	32371538	32371670	32371588	32371589	Frame_Shift_Ins	-	G	p.S590fs
BLCA	TCGA-BT-A3PH-01	MSL1	ENST00000583127.1,ENST00000579565.1,ENST00000339569.5,ENST00000578648.1,ENST00000398532.4	chr17	38289294:38289362:38289786:38289911:38290079:38290139,	38289787	38289911	38289813	38289822	Frame_Shift_Del	AAAGAATTTT	-	p.Q327fs
BLCA	TCGA-BT-A3PJ-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937042	48937043	Frame_Shift_Ins	-	A	p.D270fs
BLCA	TCGA-BT-A42B-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1275923:1276110:1276270:1276496:1276612:1276788,	1276271	1276496	1276413	1276414	Frame_Shift_Ins	-	G	p.T5606fs
BLCA	TCGA-BT-A42C-01	RPL23	ENST00000577407.1,ENST00000479035.2,ENST00000245857.5,ENST00000394332.1,ENST00000378096.3,ENST00000470646.1	chr17	37006691:37006728:37008856:37008985:37009274:37009358,	37008857	37008985	37008873	37008892	Frame_Shift_Del	TGGTTTGCCTTTCTTGACTG	-	p.T64fs
BLCA	TCGA-C4-A0F0-01	CSNK1E	ENST00000430335.1,ENST00000359867.3,ENST00000400206.2,ENST00000467976.1,ENST00000396832.1,ENST00000405675.3,ENST00000451964.1,ENST00000413574.2,ENST00000403904.1	chr22	38695960:38696070:38696728:38696957:38698865:38698995,	38696729	38696957	38696882	38696883	Frame_Shift_Del	GC	-	p.G137fs
BLCA	TCGA-CF-A1HS-01	DHTKD1	ENST00000263035.4	chr10	12159671:12159754:12160747:12160917:12162180:12162266,	12160748	12160917	12160750	12160750	Frame_Shift_Del	T	-	p.V802fs
BLCA	TCGA-CF-A1HS-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.K41fs
BLCA	TCGA-CF-A3MH-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831730	2831731	Frame_Shift_Ins	-	C	p.D366fs
BLCA	TCGA-CU-A0YR-01	ME2	ENST00000382927.3,ENST00000321341.5	chr18	48447443:48447557:48450467:48450582:48452125:48452268,	48450468	48450582	48450474	48450480	Frame_Shift_Del	AAAGCAA	-	p.K355fs
BLCA	TCGA-CU-A0YR-01	CPA2	ENST00000222481.4	chr7	129917665:129917756:129919302:129919502:129921943:129922028,	129919303	129919502	129919306	129919318	Frame_Shift_Del	CTGGAGCCAGCAG	-	p.P264fs
BLCA	TCGA-CU-A0YR-01	RALGDS	ENST00000372062.3,ENST00000393160.3,ENST00000424572.1,ENST00000372047.3,ENST00000372050.3,ENST00000469972.1,ENST00000542690.1,ENST00000493438.1,ENST00000393157.3,ENST00000482648.1	chr9	135977324:135977526:135977862:135977958:135978165:135978287,	135977863	135977958	135977871	135977872	Frame_Shift_Ins	-	CGCT	p.R667fs
BLCA	TCGA-CU-A3KJ-01	PPFIA1	ENST00000389547.3,ENST00000530294.1,ENST00000253925.7	chr11	70189856:70189998:70194294:70194526:70200406:70200558,	70194295	70194526	70194407	70194407	Frame_Shift_Del	C	-	p.P682fs
BLCA	TCGA-CU-A3KJ-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806620	33806620	Frame_Shift_Del	A	-	p.F232fs
BLCA	TCGA-DK-A1A3-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2,ENST00000487682.1	chr1	156911163:156911225:156911655:156911781:156912481:156912572,	156911656	156911781	156911698	156911698	Frame_Shift_Del	G	-	p.P1097fs
BLCA	TCGA-DK-A1A5-01	BAZ2A	ENST00000551812.1,ENST00000549884.1	chr12	57007736:57007922:57008797:57009391:57011178:57011316,	57008798	57009391	57009177	57009178	Frame_Shift_Ins	-	C	p.G119fs
BLCA	TCGA-DK-A1A7-01	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027759	40027772	Frame_Shift_Del	AGGAGCCAAGGAGA	-	p.I591fs
BLCA	TCGA-DK-A1AA-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123210181:123210321:123211806:123211908:123215229:123215378,	123211807	123211908	123211880	123211881	Frame_Shift_Ins	-	T	p.A916fs
BLCA	TCGA-DK-A1AC-01	RBBP8	ENST00000399722.2,ENST00000327155.5,ENST00000360790.5	chr18	20581548:20581692:20596790:20596887:20602091:20602233,20586325:20586395:20596790:20596887:20602091:20602233,	20596791	20596887	20596832	20596833	Frame_Shift_Ins	-	C	p.R800fs
BLCA	TCGA-DK-A1AC-01	COPS4	ENST00000509093.1,ENST00000503682.1,ENST00000509317.1,ENST00000511653.1,ENST00000264389.2	chr4	83978078:83978232:83978410:83978561:83984228:83984399,	83978411	83978561	83978470	83978477	Frame_Shift_Del	CAATGAGC	-	p.Y208fs
BLCA	TCGA-DK-A1AD-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72409874:72409948:72410385:72410507:72410952:72411055,	72410386	72410507	72410394	72410395	Frame_Shift_Del	AC	-	p.T484fs
BLCA	TCGA-DK-A1AE-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58616959:58617086:58619241:58619410:58620448:58620652,	58619242	58619410	58619315	58619316	Frame_Shift_Del	CT	-	p.G244fs
BLCA	TCGA-DK-A1AG-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182564	59182565	Frame_Shift_Del	CT	-	p.E665fs
BLCA	TCGA-DK-A1AG-01	MICALL2	ENST00000472100.1	chr7	1468254:1468427:1473845:1474783:1476377:1476472,	1473846	1474783	1474248	1474249	Frame_Shift_Ins	-	T	p.S900fs
BLCA	TCGA-DK-A1AG-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000397519.2	chr9	15478474:15478550:15479588:15479685:15486003:15486066,	15479589	15479685	15479597	15479609	Frame_Shift_Del	CGTCCTCTTTTAG	-	p.P178fs
BLCA	TCGA-DK-A2HX-01	PHF7	ENST00000498509.2	chr3	52455031:52455078:52455663:52456897:52457106:52457299,	52455664	52456897	52456270	52456291	Frame_Shift_Del	TCTCAGACTTATATCAGCGCTA	-	p.F238fs
BLCA	TCGA-DK-A2HX-01	PHF7	ENST00000461861.1,ENST00000327906.3	chr3	52455663:52455770:52456237:52456354:52456775:52456852,	52456238	52456354	52456270	52456291	Frame_Shift_Del	TCTCAGACTTATATCAGCGCTA	-	p.F238fs
BLCA	TCGA-DK-A3IL-01	GRHL3	ENST00000342072.4,ENST00000236255.4,ENST00000361548.4,ENST00000356046.2,ENST00000350501.5,ENST00000528064.1	chr1	24661134:24661196:24662971:24663317:24663567:24663641,	24662972	24663317	24663111	24663112	Frame_Shift_Ins	-	A	p.E141fs
BLCA	TCGA-DK-A3IL-01	KDM3B	ENST00000314358.5	chr5	137717204:137717279:137721710:137722310:137726701:137727950,	137721711	137722310	137722024	137722028	Frame_Shift_Del	GGACT	-	p.R365fs
BLCA	TCGA-DK-A3IL-01	KDM3B	ENST00000510866.1,ENST00000394866.1	chr5	137721864:137721879:137721977:137722310:137726701:137727950,	137721978	137722310	137722024	137722028	Frame_Shift_Del	GGACT	-	p.R365fs
BLCA	TCGA-DK-A3IL-01	NTRK2	ENST00000376208.1,ENST00000376213.1,ENST00000395866.2,ENST00000323115.4,ENST00000395882.1,ENST00000304053.6,ENST00000376214.1,ENST00000359847.3,ENST00000277120.3	chr9	87342607:87342874:87356806:87356842:87359887:87359988,	87356807	87356842	87356831	87356837	Frame_Shift_Del	TAATTTA	-	p.V395fs
BLCA	TCGA-DK-A3IM-01	SLC25A30	ENST00000519676.1	chr13	45980017:45980112:45985496:45985615:45992434:45992509,45983061:45983209:45985496:45985615:45992434:45992509,	45985497	45985615	45985521	45985522	Frame_Shift_Ins	-	C	p.G13fs
BLCA	TCGA-DK-A3IM-01	KRBA1	ENST00000496259.1,ENST00000485033.2,ENST00000319551.8	chr7	149426306:149426460:149427236:149427431:149427517:149427635,149425613:149425766:149427236:149427431:149427517:149427658,	149427237	149427431	149427255	149427255	Frame_Shift_Del	C	-	p.S610fs
BLCA	TCGA-DK-A3IN-01	UROD	ENST00000491300.1,ENST00000486699.1,ENST00000460334.1,ENST00000473012.1	chr1	45478963:45479026:45479246:45479463:45479580:45479628,	45479247	45479463	45479331	45479332	Frame_Shift_Del	AG	-	p.E114fs
BLCA	TCGA-DK-A3IN-01	UROD	ENST00000490385.1,ENST00000494399.1,ENST00000246337.4,ENST00000478467.1,ENST00000491773.1,ENST00000462688.1,ENST00000469548.1	chr1	45478963:45479026:45479265:45479463:45479580:45479628,	45479266	45479463	45479331	45479332	Frame_Shift_Del	AG	-	p.E114fs
BLCA	TCGA-DK-A3IS-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
BLCA	TCGA-DK-A3IS-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
BLCA	TCGA-DK-A3IT-01	USP4	ENST00000416417.1,ENST00000491791.1,ENST00000415188.1,ENST00000265560.4,ENST00000464168.1,ENST00000351842.4	chr3	49362136:49362196:49362326:49362472:49363151:49363278,	49362327	49362472	49362440	49362441	Frame_Shift_Ins	-	A	p.F173fs
BLCA	TCGA-DK-A3IU-01	UBE2K	ENST00000438068.2,ENST00000513231.1,ENST00000503368.1,ENST00000261427.5,ENST00000510719.1	chr4	39776453:39776553:39779301:39779430:39779979:39780004,	39779302	39779430	39779392	39779392	Frame_Shift_Del	A	-	p.K164fs
BLCA	TCGA-DK-A3WW-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348573	89348573	Frame_Shift_Del	C	-	p.K1459fs
BLCA	TCGA-E5-A2PC-01	ABCC8	ENST00000526921.1,ENST00000389817.3,ENST00000302539.4,ENST00000529967.1	chr11	17428434:17428676:17428900:17429000:17429938:17430064,	17428901	17429000	17428979	17428979	Frame_Shift_Del	C	-	p.A948fs
BLCA	TCGA-E5-A2PC-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52880880:52881048:52883127:52883299:52884024:52884157,	52883128	52883299	52883129	52883129	Frame_Shift_Del	T	-	p.K221fs
BLCA	TCGA-FD-A3B3-01	NKAIN4	ENST00000470246.1,ENST00000370316.3,ENST00000466885.1,ENST00000370307.2	chr20	61873079:61873104:61873890:61873975:61875375:61875436,61872741:61872858:61873890:61873975:61875375:61875436,	61873891	61873975	61873940	61873941	Frame_Shift_Del	AG	-	p.L189fs
BLCA	TCGA-FD-A3B6-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673458	75673459	Frame_Shift_Del	GT	-	p.V208fs
BLCA	TCGA-FD-A3B6-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000434676.2,ENST00000358214.5,ENST00000549926.1,ENST00000547312.1,ENST00000548671.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1,ENST00000551476.1	chr12	32854348:32854496:32861086:32861158:32863862:32863937,32860300:32860347:32861086:32861158:32863862:32863937,	32861087	32861158	32861134	32861135	Frame_Shift_Del	AG	-	p.T115fs
BLCA	TCGA-FD-A3B6-01	ZXDC	ENST00000389709.3	chr3	126160607:126160789:126178495:126178580:126180377:126181063,	126178496	126178580	126178522	126178522	Frame_Shift_Del	T	-	p.K729fs
BLCA	TCGA-FD-A3B7-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.G755fs
BLCA	TCGA-FD-A3N5-01	MAP3K6	ENST00000493901.1,ENST00000357582.2,ENST00000374040.3	chr1	27682878:27682991:27683080:27683240:27683499:27683605,	27683081	27683240	27683217	27683233	Frame_Shift_Del	GTGAGACCGCCTCCTTC	-	p.E1124fs
BLCA	TCGA-FD-A3N5-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15289835:15290093:15290174:15290307:15290882:15291067,	15290175	15290307	15290217	15290223	Frame_Shift_Del	GGTCAAT	-	p.I1138fs
BLCA	TCGA-FD-A3NA-01	GGA3	ENST00000582717.1,ENST00000538886.1,ENST00000245541.6,ENST00000537584.2,ENST00000582486.1,ENST00000580799.1,ENST00000582200.1,ENST00000578348.1,ENST00000351904.7	chr17	73238969:73238992:73239143:73239247:73239527:73239651,	73239144	73239247	73239175	73239175	Frame_Shift_Del	T	-	p.N166fs
BLCA	TCGA-FD-A3NA-01	GGA3	ENST00000584243.1	chr17	73238969:73238992:73239143:73239339:73239527:73239651,	73239144	73239339	73239175	73239175	Frame_Shift_Del	T	-	p.N166fs
BLCA	TCGA-FD-A3SL-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039151	49039160	Frame_Shift_Del	GATCAAAGAA	-	p.L743fs
BLCA	TCGA-FD-A3SL-01	CORO1A	ENST00000563778.1,ENST00000561815.1,ENST00000219150.5,ENST00000569970.1,ENST00000568763.1,ENST00000565497.1,ENST00000570045.1	chr16	30196529:30196728:30198136:30198266:30198359:30198404,30197918:30198041:30198136:30198266:30198359:30198404,	30198137	30198266	30198259	30198260	Frame_Shift_Ins	-	T	p.L148fs
BLCA	TCGA-FD-A3SL-01	MTHFD2	ENST00000409601.1	chr2	74425755:74425869:74432831:74433016:74435695:74435848,	74432832	74433016	74432891	74432897	Frame_Shift_Del	GGCAGGA	-	p.R54fs
BLCA	TCGA-FD-A3SM-01	SPG21	ENST00000557795.1	chr15	65273306:65273363:65275844:65275931:65281743:65281812,65273306:65273363:65275844:65275931:65282002:65282045,65273306:65273363:65275844:65275931:65281506:65281611,65273306:65273363:65275844:65275931:65280956:65281154,	65275845	65275931	65275846	65275846	Frame_Shift_Del	T	-	p.K21fs
BLCA	TCGA-FD-A3SM-01	TNRC6A	ENST00000491718.1,ENST00000315183.7,ENST00000567232.1,ENST00000395799.3,ENST00000450465.2	chr16	24805864:24806040:24807227:24807260:24808810:24808824,	24807228	24807260	24807240	24807240	Frame_Shift_Del	A	-	p.K1181fs
BLCA	TCGA-FD-A3SN-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056181	27056191	Frame_Shift_Del	CAGCCATATGG	-	p.Q393fs
BLCA	TCGA-FD-A3SN-01	IFI44L	ENST00000476521.1	chr1	79101021:79101174:79102784:79102888:79106705:79106806,	79102785	79102888	79102839	79102840	Frame_Shift_Ins	-	A	p.S333fs
BLCA	TCGA-FD-A3SN-01	IFI44L	ENST00000486882.1,ENST00000342282.3,ENST00000370751.5,ENST00000476876.1	chr1	79101021:79101174:79102716:79102888:79106705:79106806,	79102717	79102888	79102839	79102840	Frame_Shift_Ins	-	A	p.S333fs
BLCA	TCGA-FD-A3SN-01	EPHX3	ENST00000221730.3,ENST00000435261.1,ENST00000602233.1	chr19	15341772:15341901:15342049:15342207:15342586:15342672,	15342050	15342207	15342144	15342157	Frame_Shift_Del	CAAGTCCACAGCCA	-	p.V127fs
BLCA	TCGA-FD-A3SP-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101322	27101326	Frame_Shift_Del	CAGAT	-	p.T1535fs
BLCA	TCGA-FD-A3SP-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.P781fs
BLCA	TCGA-FD-A3SQ-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000367284.5	chr1	201982309:201982426:201982956:201983152:201984336:201984922,	201982957	201983152	201983027	201983028	Frame_Shift_Ins	-	A	p.L292fs
BLCA	TCGA-FD-A3SR-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577104	7577105	Frame_Shift_Ins	-	GGACAGGC	p.P278fs
BLCA	TCGA-FD-A3SS-01	MYLIP	ENST00000349606.4,ENST00000356840.3	chr6	16143250:16143448:16143929:16144094:16145127:16145548,	16143930	16144094	16144013	16144022	Frame_Shift_Del	TCGTGCTCTT	-	p.I249fs
BLCA	TCGA-FJ-A3Z7-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204411653:204411761:204412544:204412725:204413195:204413290,	204412545	204412725	204412694	204412697	Frame_Shift_Del	ACTG	-	p.Q966fs
BLCA	TCGA-FJ-A3Z7-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559126	56559127	Frame_Shift_Ins	-	G	p.P1038fs
BLCA	TCGA-FJ-A3Z7-01	FAM120B	ENST00000252510.9,ENST00000540480.1,ENST00000476287.1,ENST00000537664.1	chr6	170667313:170667406:170697374:170697581:170700100:170700209,	170697375	170697581	170697422	170697423	Frame_Shift_Ins	-	CG	p.V777fs
BLCA	TCGA-FJ-A3ZE-01	PPFIA3	ENST00000602351.1,ENST00000602848.1	chr19	49646240:49646261:49649199:49649262:49651339:49651515,	49649200	49649262	49649253	49649253	Frame_Shift_Del	G	-	p.T933fs
BLCA	TCGA-FJ-A3ZE-01	NOP14	ENST00000416614.2,ENST00000314262.6	chr4	2941016:2941070:2941253:2941372:2943308:2943443,	2941254	2941372	2941321	2941327	Frame_Shift_Del	GGCAGAG	-	p.L749fs
BLCA	TCGA-FT-A3EE-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88665027:88665120:88666198:88666356:88675341:88675459,	88666199	88666356	88666210	88666211	Frame_Shift_Ins	-	GC	p.K314fs
BLCA	TCGA-G2-A2EJ-01	SAMHD1	ENST00000262878.4	chr20	35532559:35532652:35533766:35533906:35539620:35539736,	35533767	35533906	35533895	35533896	Frame_Shift_Ins	-	A	p.F427fs
BLCA	TCGA-G2-A2EK-01	BEST3	ENST00000548658.1,ENST00000331471.4,ENST00000330891.5,ENST00000393365.1	chr12	70088149:70088244:70091426:70091593:70092984:70093065,	70091427	70091593	70091534	70091534	Frame_Shift_Del	A	-	p.F15fs
BLCA	TCGA-G2-A2ES-01	ITCH	ENST00000483727.1,ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33049897:33050026:33057852:33057925:33059248:33059320,	33057853	33057925	33057885	33057897	Frame_Shift_Del	ACTTCAAAGCAAA	-	p.D527fs
BLCA	TCGA-G2-A3IB-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
BLCA	TCGA-G2-A3IE-01	DAP3	ENST00000466384.1,ENST00000343043.3,ENST00000368336.5,ENST00000497826.1,ENST00000421487.2,ENST00000471214.1,ENST00000462978.1,ENST00000471642.2,ENST00000535183.1	chr1	155697398:155697529:155698832:155698913:155698998:155699157,	155698833	155698913	155698864	155698867	Frame_Shift_Del	AGAG	-	p.K212fs
BLCA	TCGA-G2-A3IE-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736314	30736314	Frame_Shift_Del	C	-	p.P1857fs
BLCA	TCGA-G2-A3IE-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	713382	713383	Frame_Shift_Del	TA	-	p.S872fs
BLCA	TCGA-G2-A3VY-01	RFPL2	ENST00000400237.1,ENST00000400236.3	chr22	32588888:32589179:32590331:32590477:32598319:32598537,	32590332	32590477	32590428	32590434	Frame_Shift_Del	TCCCACC	-	p.G55fs
BLCA	TCGA-G2-A3VY-01	YWHAZ	ENST00000395956.3,ENST00000395957.2,ENST00000395953.2,ENST00000353245.3,ENST00000395948.2,ENST00000395951.3,ENST00000522542.1,ENST00000395958.2,ENST00000457309.1,ENST00000419477.2,ENST00000523848.1,ENST00000521607.1,ENST00000522819.1,ENST00000521309.1	chr8	101932943:101932980:101936182:101936278:101936362:101936526,	101936183	101936278	101936227	101936245	Frame_Shift_Del	TGTATGACTCTTCACTTAA	-	p.L206fs
BLCA	TCGA-GC-A3BM-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971092	21971093	Frame_Shift_Del	CC	-	p.G89fs
BLCA	TCGA-GC-A3BM-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971092	21971093	Frame_Shift_Del	CC	-	p.G89fs
BLCA	TCGA-GC-A3RB-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579413	7579414	Frame_Shift_Ins	-	C	p.W91fs
BLCA	TCGA-GC-A3RB-01	WDR33	ENST00000322313.4	chr2	128467266:128467430:128471156:128471595:128474728:128474837,	128471157	128471595	128471200	128471200	Frame_Shift_Del	G	-	p.R1089fs
BLCA	TCGA-GC-A3RB-01	SLC25A4	ENST00000491736.1	chr4	186066219:186066404:186066508:186067053:186067967:186068395,	186066509	186067053	186067010	186067011	Frame_Shift_Ins	-	A	p.D232fs
BLCA	TCGA-GC-A3RB-01	SLC25A4	ENST00000281456.6	chr4	186066219:186066404:186066912:186067053:186067967:186068395,	186066913	186067053	186067010	186067011	Frame_Shift_Ins	-	A	p.D232fs
BLCA	TCGA-GC-A3RC-01	CXXC1	ENST00000412036.2,ENST00000285106.6,ENST00000589548.1,ENST00000586837.1,ENST00000589940.1	chr18	47812118:47812298:47812391:47812627:47812908:47813009,	47812392	47812627	47812527	47812533	Frame_Shift_Del	CCCTCCA	-	p.G106fs
BLCA	TCGA-GC-A3RC-01	CYP4F3	ENST00000587360.1	chr19	15752224:15752423:15757861:15757915:15758006:15758134,	15757862	15757915	15757870	15757874	Frame_Shift_Del	GTACC	-	p.V118fs
BLCA	TCGA-GC-A3RC-01	SOX10	ENST00000396884.2,ENST00000360880.2	chr22	38370050:38370205:38373873:38374142:38379363:38379421,	38373874	38374142	38374040	38374040	Frame_Shift_Del	C	-	p.R177fs
BLCA	TCGA-GC-A3YS-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037882	49037897	Frame_Shift_Del	ATGTATGGCATATGCA	-	p.M708fs
BLCA	TCGA-GD-A2C5-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981484	201981494	Frame_Shift_Del	CTGATGAGCTC	-	p.S133fs
BLCA	TCGA-GD-A3OQ-01	CCAR1	ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6	chr10	70525644:70525836:70530962:70531202:70532744:70532856,	70530963	70531202	70531073	70531074	Frame_Shift_Ins	-	A	p.D803fs
BLCA	TCGA-GD-A3OQ-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229719	7229725	Frame_Shift_Del	TCGGCCA	-	p.S463fs
BLCA	TCGA-GU-A42R-01	PDCD11	ENST00000369797.3	chr10	105166365:105166547:105169455:105169563:105172872:105173079,	105169456	105169563	105169473	105169474	Frame_Shift_Ins	-	A	p.L296fs
BLCA	TCGA-GV-A3JV-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372615	175372615	Frame_Shift_Del	C	-	p.V213fs
BLCA	TCGA-GV-A3JV-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981520	201981521	Frame_Shift_Ins	-	G	p.K145fs
BLCA	TCGA-GV-A3JZ-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
BLCA	TCGA-GV-A3QH-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47224335:47224480:47243164:47243291:47255875:47255981,	47243165	47243291	47243183	47243186	Frame_Shift_Del	CCTG	-	p.A157fs
BLCA	TCGA-GV-A3QH-01	MFSD10	ENST00000507555.1,ENST00000507272.1,ENST00000514800.1,ENST00000329687.4,ENST00000514031.1,ENST00000355443.4,ENST00000503596.1	chr4	2932787:2932877:2932953:2933001:2933101:2933192,	2932954	2933001	2932969	2932969	Frame_Shift_Del	C	-	p.V383fs
BLCA	TCGA-GV-A3QI-01	USP28	ENST00000537490.1,ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000535607.1,ENST00000537706.1	chr11	113688552:113688559:113694326:113694422:113697954:113698082,	113694327	113694422	113694349	113694350	Frame_Shift_Del	TT	-	p.K420fs
BLCA	TCGA-GV-A3QI-01	PDE9A	ENST00000335512.4,ENST00000486902.1,ENST00000467162.1,ENST00000291539.6	chr21	44073922:44073993:44108026:44108104:44119077:44119121,44106306:44106372:44108026:44108104:44119077:44119121,	44108027	44108104	44108087	44108088	Frame_Shift_Ins	-	C	p.M67fs
BLCA	TCGA-GV-A3QI-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541806	187541807	Frame_Shift_Ins	-	TTTAGGTGACT	p.K1978fs
BLCA	TCGA-GV-A40E-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000567239.1	chr16	69660305:69660431:69680930:69681489:69687138:69687331,	69680931	69681489	69681191	69681191	Frame_Shift_Del	A	-	p.N154fs
BLCA	TCGA-GV-A40E-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
BLCA	TCGA-GV-A40E-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087883	109087884	Frame_Shift_Ins	-	A	p.E700fs
BLCA	TCGA-GV-A40E-01	BEND6	ENST00000484701.1,ENST00000370746.3,ENST00000370750.2,ENST00000545789.1	chr6	56879930:56880151:56882004:56882197:56883218:56883269,	56882005	56882197	56882036	56882037	Frame_Shift_Ins	-	T	p.C184fs
BLCA	TCGA-GV-A40E-01	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081695	144081696	Frame_Shift_Ins	-	A	p.I193fs
BLCA	TCGA-GV-A40G-01	PLD2	ENST00000572940.1,ENST00000263088.6,ENST00000571273.1,ENST00000576983.1	chr17	4721591:4721680:4721788:4721902:4722068:4722118,	4721789	4721902	4721806	4721807	Frame_Shift_Ins	-	A	p.R676fs
BLCA	TCGA-GV-A40G-01	ASNA1	ENST00000591090.1,ENST00000357332.3	chr19	12856193:12856339:12856422:12856573:12858010:12858118,	12856423	12856573	12856516	12856520	Frame_Shift_Del	GCGGG	-	p.E184fs
BLCA	TCGA-H4-A2HO-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000471618.1,ENST00000478060.1,ENST00000469667.1	chr16	76461348:76461496:76481908:76482112:76482663:76482848,	76481909	76482112	76481915	76481915	Frame_Shift_Del	A	-	p.E182fs
BLCA	TCGA-HQ-A2OE-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126859151:126859274:126860222:126860612:126862309:126862470,	126860223	126860612	126860380	126860381	Frame_Shift_Ins	-	A	p.V87fs
BLCA	TCGA-K4-A3WU-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.M1388fs
BRCA	TCGA-D8-A27N-01	A2ML1	ENST00000299698.7,ENST00000539547.1,ENST00000541459.1	chr12	9013730:9013893:9016389:9016604:9020437:9020653,	9016390	9016604	9016563	9016564	Frame_Shift_Del	GC	-	p.A1226fs
BRCA	TCGA-AR-A0TP-01	ABCC9	ENST00000261200.4,ENST00000261201.4	chr12	22028587:22028660:22035699:22035807:22040759:22040868,	22035700	22035807	22035726	22035727	Frame_Shift_Ins	-	G	p.A664fs
BRCA	TCGA-A2-A0YJ-01	ABCF2	ENST00000287844.2,ENST00000222388.2,ENST00000473874.1	chr7	150915839:150915959:150916149:150916245:150918663:150918766,	150916150	150916245	150916218	150916219	Frame_Shift_Ins	-	C	p.R316fs
BRCA	TCGA-A2-A0T2-01	ABHD6	ENST00000295962.4,ENST00000478253.1	chr3	58256658:58256791:58260384:58260542:58270811:58270866,	58260385	58260542	58260470	58260470	Frame_Shift_Del	C	-	p.P204fs
BRCA	TCGA-EW-A1PD-01	ACE	ENST00000290866.4,ENST00000290863.6,ENST00000584865.1,ENST00000490216.2,ENST00000428043.1,ENST00000413513.3,ENST00000582761.1,ENST00000579314.1	chr17	61566008:61566152:61566301:61566493:61568314:61568412,	61566302	61566493	61566485	61566486	Frame_Shift_Ins	-	C	p.L879fs
BRCA	TCGA-D8-A27H-01	ACSL1	ENST00000454703.2,ENST00000506733.1,ENST00000437665.3,ENST00000281455.2,ENST00000503407.1,ENST00000513317.1,ENST00000504342.1,ENST00000515030.1,ENST00000507295.1	chr4	185686006:185686079:185687044:185687140:185687775:185687856,	185687045	185687140	185687030	185687045	Frame_Shift_Del	TGACATCCACCTCACC	-	p.Q453fs
BRCA	TCGA-A8-A094-01	ACSS3	ENST00000548324.1,ENST00000261206.3,ENST00000548058.1	chr12	81545779:81545875:81568566:81568718:81593119:81593223,	81568567	81568718	81568684	81568697	Frame_Shift_Del	GGGGCAGCTTTGGG	-	p.G406fs
BRCA	TCGA-E2-A14W-01	ADAMTS1	ENST00000284984.3	chr21	28212193:28212380:28212594:28212881:28213316:28213484,	28212595	28212881	28212818	28212828	Frame_Shift_Del	GAGGTGCCAGG	-	p.P478fs
BRCA	TCGA-E9-A1NC-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.I395fs
BRCA	TCGA-A8-A09W-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142941	31142947	Frame_Shift_Del	GGAAAGA	-	p.R379fs
BRCA	TCGA-A8-A09W-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142951	31142970	Frame_Shift_Del	GTGTTTGAGCTGGGGCTGGG	-	p.V383fs
BRCA	TCGA-A8-A09W-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142972	31142973	Frame_Shift_Ins	-	AA	p.S390fs
BRCA	TCGA-A8-A0A1-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673850	151673850	Frame_Shift_Del	G	-	p.E1442fs
BRCA	TCGA-E2-A155-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603204	91603204	Frame_Shift_Del	T	-	p.V77fs
BRCA	TCGA-AO-A0J8-01	AMMECR1	ENST00000372057.1	chrX	109459745:109459860:109507716:109507827:109560826:109560984,	109507717	109507827	109507722	109507738	Frame_Shift_Del	AAGTGTGTACTCCCTGA	-	p.L188fs
BRCA	TCGA-BH-A0DK-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351746	89351747	Frame_Shift_Ins	-	T	p.A401fs
BRCA	TCGA-A2-A1FZ-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255050	9255051	Frame_Shift_Del	AA	-	p.S596fs
BRCA	TCGA-A8-A09K-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256071	9256074	Frame_Shift_Del	AAAC	-	p.K936fs
BRCA	TCGA-BH-A0DK-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255963	9255964	Frame_Shift_Del	AG	-	p.S903fs
BRCA	TCGA-A8-A09M-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9258366	9258369	Frame_Shift_Del	CAGT	-	p.S1702fs
BRCA	TCGA-AN-A0XU-01	ANO9	ENST00000532094.1,ENST00000534161.1,ENST00000528927.1,ENST00000526142.1,ENST00000332826.6	chr11	421140:421198:428087:428199:428357:428394,	428088	428199	428132	428136	Frame_Shift_Del	GAAGA	-	p.F429fs
BRCA	TCGA-BH-A18F-01	AP4M1	ENST00000359593.4,ENST00000438383.1,ENST00000429084.1,ENST00000422582.1,ENST00000421755.1,ENST00000479916.1,ENST00000439416.1,ENST00000445208.1	chr7	99701714:99701777:99702496:99702563:99702667:99702721,	99702497	99702563	99702544	99702547	Frame_Shift_Del	CTTC	-	p.P221fs
BRCA	TCGA-BH-A1FD-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395131	33395132	Frame_Shift_Ins	-	CATCTTCCTC	p.Q30fs
BRCA	TCGA-E2-A1L8-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.L29fs
BRCA	TCGA-E2-A1LB-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.L29fs
BRCA	TCGA-E9-A1RE-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.L29fs
BRCA	TCGA-EW-A1P8-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.L29fs
BRCA	TCGA-BH-A0HQ-01	AQP7	ENST00000379506.3,ENST00000379507.3,ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33386966:33387090:33401234:33401285,33386401:33386539:33386966:33387090:33395075:33395147,	33386967	33387090	33387044	33387044	Frame_Shift_Del	T	-	p.Y64fs
BRCA	TCGA-E9-A1NC-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1553fs
BRCA	TCGA-A8-A07J-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094455	27094456	Frame_Shift_Del	TA	-	p.Y1055fs
BRCA	TCGA-A8-A06N-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101427	27101428	Frame_Shift_Ins	-	TA	p.N1571fs
BRCA	TCGA-B6-A0WT-01	ARID1B	ENST00000414678.2	chr6	157431605:157431695:157454161:157454341:157469757:157470085,157405899:157406039:157454161:157454341:157469757:157470085,	157454162	157454341	157454190	157454190	Frame_Shift_Del	T	-	p.Q730fs
BRCA	TCGA-B6-A0WT-01	ARID1B	ENST00000452544.1	chr6	157431605:157431695:157454173:157454341:157469757:157470085,	157454174	157454341	157454190	157454190	Frame_Shift_Del	T	-	p.Q730fs
BRCA	TCGA-D8-A1JK-01	ARMC1	ENST00000276569.3,ENST00000518908.1	chr8	66517667:66517773:66525478:66525668:66534497:66534589,	66525479	66525668	66525619	66525620	Frame_Shift_Del	TG	-	p.I109fs
BRCA	TCGA-C8-A1HF-01	ARMC8	ENST00000393058.3,ENST00000461822.1,ENST00000469044.1,ENST00000481646.1,ENST00000491704.1,ENST00000460495.1,ENST00000485396.1,ENST00000466762.1,ENST00000538260.1	chr3	137988881:137988974:137991808:137991958:137993290:137993386,	137991809	137991958	137991869	137991869	Frame_Shift_Del	G	-	p.E500fs
BRCA	TCGA-A2-A04Y-01	ARNTL	ENST00000534544.1,ENST00000533520.1,ENST00000396441.3,ENST00000389708.3,ENST00000361003.4,ENST00000403290.1,ENST00000480685.1,ENST00000389707.4,ENST00000527998.1	chr11	13371491:13371617:13375847:13375995:13378285:13378324,	13375848	13375995	13375994	13375998	Frame_Shift_Del	CAGTA	-	p.Q47fs
BRCA	TCGA-D8-A1Y0-01	ARSK	ENST00000504873.1,ENST00000513814.1,ENST00000380009.4	chr5	94918619:94918902:94922265:94922437:94927104:94927329,	94922266	94922437	94922376	94922391	Frame_Shift_Del	AGAAATTAAGAATATT	-	p.I272fs
BRCA	TCGA-E9-A1NI-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660979	3660980	Frame_Shift_Ins	-	G	p.H227fs
BRCA	TCGA-D8-A27K-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131566	231131567	Frame_Shift_Ins	-	A	p.K174fs
BRCA	TCGA-A8-A094-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070460	197070464	Frame_Shift_Del	TTATT	-	p.I2640fs
BRCA	TCGA-EW-A1IZ-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743497	130743498	Frame_Shift_Del	AA	-	p.F218fs
BRCA	TCGA-C8-A26X-01	ATF6	ENST00000367942.3,ENST00000476437.1	chr1	161816238:161816370:161821511:161821625:161823013:161823113,	161821512	161821625	161821536	161821537	Frame_Shift_Ins	-	A	p.A449fs
BRCA	TCGA-AN-A0XW-01	ATIC	ENST00000443953.1,ENST00000435675.1,ENST00000540518.1,ENST00000236959.9	chr2	216191544:216191701:216197104:216197230:216198072:216198180,	216197105	216197230	216197123	216197124	Frame_Shift_Ins	-	A	p.F237fs
BRCA	TCGA-E2-A155-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000467388.1,ENST00000426233.1,ENST00000540518.1,ENST00000446622.1,ENST00000236959.9	chr2	216203592:216203630:216209501:216209594:216211481:216211664,	216209502	216209594	216209567	216209568	Frame_Shift_Del	CT	-	p.S432fs
BRCA	TCGA-AO-A129-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108099904:108100050:108106396:108106561:108114679:108114811,	108106397	108106561	108106472	108106472	Frame_Shift_Del	T	-	p.Y137fs
BRCA	TCGA-A8-A07P-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108163345:108163520:108164039:108164204:108165653:108165786,	108164040	108164204	108164150	108164151	Frame_Shift_Del	GC	-	p.R1575fs
BRCA	TCGA-AN-A0FJ-01	ATP10B	ENST00000327245.5	chr5	160059135:160059374:160061360:160061613:160063188:160063316,	160061361	160061613	160061486	160061499	Frame_Shift_Del	TTGAGGGCTCGACA	-	p.C415fs
BRCA	TCGA-BH-A0H3-01	ATP1B1	ENST00000494797.1,ENST00000499679.3,ENST00000367816.1,ENST00000367813.3,ENST00000367815.4	chr1	169080607:169080736:169094121:169094277:169096461:169096637,	169094122	169094277	169094123	169094124	Frame_Shift_Ins	-	T	p.L76fs
BRCA	TCGA-A8-A075-01	ATRX	ENST00000373344.5	chrX	76944310:76944420:76949312:76949426:76952064:76952192,	76949313	76949426	76949382	76949382	Frame_Shift_Del	C	-	p.D139fs
BRCA	TCGA-E9-A1NC-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.L89fs
BRCA	TCGA-A2-A0YT-01	BAIAP2L2	ENST00000428572.1	chr22	38481171:38481382:38482248:38482456:38483130:38483271,	38482249	38482456	38482353	38482394	Frame_Shift_Del	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	p.T441fs
BRCA	TCGA-E9-A1NC-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458970	49458971	Frame_Shift_Ins	-	G	p.E41fs
BRCA	TCGA-E9-A1NC-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458970	49458971	Frame_Shift_Ins	-	G	p.E41fs
BRCA	TCGA-E9-A1NI-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458970	49458971	Frame_Shift_Ins	-	G	p.E41fs
BRCA	TCGA-E9-A1NI-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458970	49458971	Frame_Shift_Ins	-	G	p.E41fs
BRCA	TCGA-A8-A08P-01	BAZ2A	ENST00000551812.1,ENST00000549884.1,ENST00000379441.3,ENST00000179765.5	chr12	56997303:56997484:56998000:56998075:56998368:56998583,	56998001	56998075	56998028	56998028	Frame_Shift_Del	T	-	p.K1006fs
BRCA	TCGA-BH-A1F5-01	BCL3	ENST00000403534.3,ENST00000164227.5,ENST00000444487.1	chr19	45260273:45260478:45260583:45260672:45260902:45260980,	45260584	45260672	45260669	45260680	Frame_Shift_Del	AGTGGTGAGCGT	-	p.V271fs
BRCA	TCGA-E9-A1NC-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770651	118770652	Frame_Shift_Ins	-	G	p.P1128fs
BRCA	TCGA-BH-A1F8-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766232	70766233	Frame_Shift_Ins	-	T	p.L312fs
BRCA	TCGA-E2-A15S-01	BID	ENST00000342111.5	chr22	18222213:18222254:18222847:18222942:18226568:18226779,	18222848	18222942	18222887	18222887	Frame_Shift_Del	G	-	p.S93fs
BRCA	TCGA-EW-A1PB-01	BIRC3	ENST00000263464.3,ENST00000532808.1	chr11	102201729:102201972:102206696:102206951:102207490:102207532,	102206697	102206951	102206908	102206909	Frame_Shift_Del	CT	-	p.L514fs
BRCA	TCGA-A7-A26H-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41245484	41245487	Frame_Shift_Del	TGTC	-	p.T688fs
BRCA	TCGA-AR-A0U4-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244185	41244186	Frame_Shift_Ins	-	T	p.N1121fs
BRCA	TCGA-B6-A0X1-01	BRCA1	ENST00000352993.3,ENST00000492859.1,ENST00000477152.1,ENST00000354071.3,ENST00000467274.1,ENST00000476777.1,ENST00000471181.2	chr17	41267742:41267796:41276033:41276132:41277293:41277373,41267742:41267796:41276033:41276132:41277287:41277317,	41276034	41276132	41276047	41276047	Frame_Shift_Del	C	-	p.E23fs
BRCA	TCGA-E9-A1RG-01	BTF3L4	ENST00000472944.2	chr1	52522003:52522051:52530496:52530610:52549011:52549172,	52530497	52530610	52530570	52530571	Frame_Shift_Ins	-	A	p.L46fs
BRCA	TCGA-AR-A0TX-01	C11orf49	ENST00000534581.1,ENST00000527784.1,ENST00000525895.1,ENST00000395460.2,ENST00000527268.1,ENST00000543718.1,ENST00000536126.1,ENST00000525953.1,ENST00000526827.1,ENST00000378618.2,ENST00000528488.1,ENST00000278460.7,ENST00000534249.1,ENST00000378615.3	chr11	47176726:47176812:47178573:47178769:47179363:47179473,	47178574	47178769	47178576	47178576	Frame_Shift_Del	T	-	p.F152fs
BRCA	TCGA-A8-A08L-01	C12orf4	ENST00000541014.1,ENST00000545746.1,ENST00000261250.3	chr12	4627223:4627421:4627939:4628046:4634419:4634541,	4627940	4628046	4627964	4627967	Frame_Shift_Del	CTAA	-	p.L270fs
BRCA	TCGA-BH-A0B4-01	C12orf57	ENST00000545581.1,ENST00000229281.5	chr12	7053284:7053336:7053638:7053815:7054933:7055084,	7053639	7053815	7053758	7053761	Frame_Shift_Del	GCCA	-	p.A58fs
BRCA	TCGA-BH-A0B4-01	C12orf57	ENST00000540506.2	chr12	7053284:7053336:7053542:7053815:7054933:7055084,	7053543	7053815	7053758	7053761	Frame_Shift_Del	GCCA	-	p.A58fs
BRCA	TCGA-BH-A0B4-01	C12orf57	ENST00000545581.1,ENST00000229281.5	chr12	7053284:7053336:7053638:7053815:7054933:7055084,	7053639	7053815	7053762	7053763	Frame_Shift_Ins	-	T	p.Q60fs
BRCA	TCGA-BH-A0B4-01	C12orf57	ENST00000540506.2	chr12	7053284:7053336:7053542:7053815:7054933:7055084,	7053543	7053815	7053762	7053763	Frame_Shift_Ins	-	T	p.Q60fs
BRCA	TCGA-A2-A1FX-01	C18orf25	ENST00000321319.6	chr18	43796183:43796561:43833662:43833786:43842891:43846946,	43833663	43833786	43833705	43833706	Frame_Shift_Ins	-	T	p.N315fs
BRCA	TCGA-E9-A1NC-01	C21orf58	ENST00000417060.1,ENST00000491666.1,ENST00000291691.7	chr21	47731369:47731481:47734629:47734794:47735387:47735461,	47734630	47734794	47734733	47734734	Frame_Shift_Ins	-	AT	p.A169fs
BRCA	TCGA-E9-A1NC-01	C21orf58	ENST00000397679.1,ENST00000397680.1,ENST00000397682.3,ENST00000397683.1	chr21	47731369:47731481:47734629:47734963:47735387:47735461,	47734630	47734963	47734733	47734734	Frame_Shift_Ins	-	AT	p.A169fs
BRCA	TCGA-E9-A1R3-01	C6orf62	ENST00000378119.4,ENST00000540769.1,ENST00000378102.3	chr6	24706323:24706490:24709004:24709139:24714545:24714668,	24709005	24709139	24709014	24709017	Frame_Shift_Del	CTGT	-	p.R184fs
BRCA	TCGA-BH-A0H9-01	CA11	ENST00000084798.4	chr19	49143351:49143537:49147683:49147826:49148659:49148734,	49147684	49147826	49147687	49147691	Frame_Shift_Del	CTCTC	-	p.G93fs
BRCA	TCGA-E2-A15O-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24460497:24460650:24462937:24463132:24466750:24466841,	24462938	24463132	24463095	24463095	Frame_Shift_Del	C	-	p.I733fs
BRCA	TCGA-BH-A0GY-01	CARM1	ENST00000586221.1,ENST00000344150.4,ENST00000327064.4,ENST00000590699.1	chr19	11022859:11022970:11024552:11024730:11027082:11027173,	11024553	11024730	11024609	11024609	Frame_Shift_Del	G	-	p.E243fs
BRCA	TCGA-C8-A27B-01	CASR	ENST00000490131.1,ENST00000498619.1,ENST00000296154.5	chr3	121973177:121973221:121975927:121976234:121980374:121981259,	121975928	121976234	121975971	121975992	Frame_Shift_Del	GCCATAGAGGAGATAAACAGCA	-	p.I78fs
BRCA	TCGA-A2-A0YD-01	CATSPER2	ENST00000354127.4,ENST00000396879.1,ENST00000381761.1	chr15	43924396:43924561:43924914:43925126:43927557:43927614,	43924915	43925126	43925010	43925010	Frame_Shift_Del	A	-	p.L434fs
BRCA	TCGA-A2-A0YD-01	CATSPER2	ENST00000321596.5	chr15	43924396:43924561:43924914:43925132:43927557:43927614,	43924915	43925132	43925010	43925010	Frame_Shift_Del	A	-	p.L434fs
BRCA	TCGA-AR-A24P-01	CBFB	ENST00000290858.6,ENST00000412916.2,ENST00000561924.2	chr16	67063854:67064080:67070541:67070658:67100584:67100699,67063629:67063716:67070541:67070658:67100584:67100663,	67070542	67070658	67070577	67070578	Frame_Shift_Ins	-	T	p.P69fs
BRCA	TCGA-AQ-A1H3-01	CBFB	ENST00000290858.6,ENST00000412916.2,ENST00000561924.2	chr16	67063854:67064080:67070541:67070658:67100584:67100699,67063629:67063716:67070541:67070658:67100584:67100663,	67070542	67070658	67070640	67070643	Frame_Shift_Del	AGAA	-	p.R90fs
BRCA	TCGA-E2-A153-01	CBFB	ENST00000290858.6,ENST00000412916.2,ENST00000561924.2	chr16	67063854:67064080:67070541:67070658:67100584:67100699,67063629:67063716:67070541:67070658:67100584:67100663,	67070542	67070658	67070600	67070601	Frame_Shift_Del	GA	-	p.E76fs
BRCA	TCGA-E9-A229-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000337620.4	chr7	26245987:26246130:26248012:26248175:26251281:26251337,	26248013	26248175	26248161	26248165	Frame_Shift_Del	AAGAA	-	p.K107fs
BRCA	TCGA-E9-A229-01	CBX3	ENST00000409747.1	chr7	26245987:26246130:26248085:26248175:26251281:26251337,	26248086	26248175	26248161	26248165	Frame_Shift_Del	AAGAA	-	p.K107fs
BRCA	TCGA-A2-A0EY-01	CCDC14	ENST00000495381.1	chr3	123667792:123667979:123674689:123675642:123679990:123680055,	123674690	123675642	123675589	123675589	Frame_Shift_Del	T	-	p.A77fs
BRCA	TCGA-A2-A0EY-01	CCDC14	ENST00000438440.2,ENST00000488653.2,ENST00000433542.2,ENST00000409697.3	chr3	123675201:123675274:123675586:123675642:123679990:123680055,	123675587	123675642	123675589	123675589	Frame_Shift_Del	T	-	p.A77fs
BRCA	TCGA-B6-A0WV-01	CCDC159	ENST00000591260.1	chr19	11460793:11460875:11462732:11462809:11464126:11464238,	11462733	11462809	11462767	11462768	Frame_Shift_Ins	-	A	p.N175fs
BRCA	TCGA-BH-A18R-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93697982:93698150:93701804:93701947:93704866:93705030,	93701805	93701947	93701816	93701816	Frame_Shift_Del	G	-	p.E943fs
BRCA	TCGA-AR-A1AI-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052008	50052008	Frame_Shift_Del	C	-	p.H281fs
BRCA	TCGA-AN-A0FW-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652817	55652818	Frame_Shift_Del	TC	-	p.E385fs
BRCA	TCGA-B6-A0IQ-01	CD2BP2	ENST00000569466.1,ENST00000305596.3	chr16	30365221:30365379:30365504:30365643:30365924:30366028,	30365505	30365643	30365584	30365585	Frame_Shift_Del	AG	-	p.S46fs
BRCA	TCGA-D8-A27H-01	CD300A	ENST00000582319.1	chr17	72462814:72462882:72469674:72470013:72470670:72470824,	72469675	72470013	72469794	72469801	Frame_Shift_Del	CAGATTTT	-	p.Q54fs
BRCA	TCGA-C8-A27B-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924157	6924166	Frame_Shift_Del	AGGTAAGGGA	-	p.A203fs
BRCA	TCGA-C8-A1HJ-01	CD44	ENST00000278385.6,ENST00000433892.2	chr11	35226058:35226187:35229651:35229753:35231511:35231521,35219694:35219793:35229651:35229753:35231511:35231521,35211561:35211612:35229651:35229753:35231511:35231521,	35229652	35229753	35229691	35229698	Frame_Shift_Del	CAAATCCA	-	p.A485fs
BRCA	TCGA-C8-A1HJ-01	CD44	ENST00000360158.4	chr11	35211561:35211612:35229651:35229756:35236398:35236461,	35229652	35229756	35229691	35229698	Frame_Shift_Del	CAAATCCA	-	p.A485fs
BRCA	TCGA-BH-A0BZ-01	CD5	ENST00000347785.3	chr11	60889082:60889376:60890378:60890504:60891355:60891409,	60890379	60890504	60890420	60890423	Frame_Shift_Del	GCAA	-	p.I383fs
BRCA	TCGA-A2-A04N-01	CD55	ENST00000482390.2,ENST00000391920.4,ENST00000343420.6,ENST00000367063.2,ENST00000367062.4,ENST00000314754.8,ENST00000488171.1,ENST00000367064.3,ENST00000367065.5	chr1	207495726:207495912:207497903:207498095:207498966:207499020,	207497904	207498095	207498015	207498015	Frame_Shift_Del	A	-	p.Y133fs
BRCA	TCGA-D8-A1X8-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844223	68844232	Frame_Shift_Del	GTCATGGAAG	-	p.M272fs
BRCA	TCGA-AR-A24T-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68855903:68856128:68857301:68857529:68862076:68862207,	68857302	68857529	68857311	68857312	Frame_Shift_Ins	-	T	p.I650fs
BRCA	TCGA-E2-A1IJ-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68855903:68856128:68857301:68857529:68862076:68862207,	68857302	68857529	68857397	68857398	Frame_Shift_Ins	-	T	p.T679fs
BRCA	TCGA-A2-A0SY-01	CDH1	ENST00000566510.1,ENST00000566612.1,ENST00000422392.2	chr16	68771254:68771366:68772199:68772314:68835572:68835796,	68772200	68772314	68772203	68772204	Frame_Shift_Ins	-	CA	p.S19fs
BRCA	TCGA-BH-A18P-01	CDH1	ENST00000566510.1,ENST00000566612.1,ENST00000422392.2	chr16	68771254:68771366:68772199:68772314:68835572:68835796,	68772200	68772314	68772257	68772257	Frame_Shift_Del	A	-	p.S36fs
BRCA	TCGA-B6-A0IP-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844104	68844105	Frame_Shift_Del	TC	-	p.H233fs
BRCA	TCGA-A8-A0AB-01	CDH1	ENST00000566510.1	chr16	68846037:68846166:68847215:68847465:68849417:68849662,	68847216	68847465	68847278	68847279	Frame_Shift_Ins	-	A	p.A400fs
BRCA	TCGA-A8-A0AB-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1	chr16	68846037:68846166:68847215:68847398:68849417:68849662,	68847216	68847398	68847278	68847279	Frame_Shift_Ins	-	A	p.A400fs
BRCA	TCGA-A8-A07F-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68855903:68856128:68857301:68857529:68862076:68862207,	68857302	68857529	68857331	68857337	Frame_Shift_Del	ATGGCCT	-	p.M656fs
BRCA	TCGA-AO-A0J8-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68855903:68856128:68857301:68857529:68862076:68862207,	68857302	68857529	68857485	68857485	Frame_Shift_Del	T	-	p.P708fs
BRCA	TCGA-BH-A0E9-01	CDH1	ENST00000566510.1,ENST00000562118.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68857301:68857529:68862076:68862207:68863556:68863700,	68862077	68862207	68862178	68862179	Frame_Shift_Ins	-	AT	p.E757fs
BRCA	TCGA-A2-A0T4-01	CDH1	ENST00000566510.1,ENST00000562118.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68857301:68857529:68862076:68862207:68863556:68863700,	68862077	68862207	68862179	68862180	Frame_Shift_Ins	-	T	p.E757fs
BRCA	TCGA-A8-A0A4-01	CDH1	ENST00000566510.1,ENST00000562118.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68857301:68857529:68862076:68862207:68863556:68863700,	68862077	68862207	68862203	68862204	Frame_Shift_Ins	-	C	p.Q765fs
BRCA	TCGA-BH-A203-01	CDK17	ENST00000553042.1,ENST00000543119.2,ENST00000261211.3,ENST00000542666.1	chr12	96683035:96683065:96688776:96688900:96691047:96691110,	96688777	96688900	96688890	96688901	Frame_Shift_Del	TACAGAAACAGC	-	p.L292fs
BRCA	TCGA-E9-A1NI-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48689309:48689481:48689869:48689986:48690434:48690548,	48689870	48689986	48689914	48689915	Frame_Shift_Ins	-	G	p.G1902fs
BRCA	TCGA-E2-A109-01	CHD6	ENST00000470470.1,ENST00000373233.3,ENST00000309279.7,ENST00000373222.3	chr20	40126807:40126866:40127934:40127997:40141484:40141634,	40127935	40127997	40127957	40127957	Frame_Shift_Del	A	-	p.L298fs
BRCA	TCGA-E2-A1LK-01	CHI3L1	ENST00000255409.3	chr1	203153703:203153760:203154311:203154513:203155443:203155473,	203154312	203154513	203154343	203154344	Frame_Shift_Ins	-	C	p.L75fs
BRCA	TCGA-E2-A109-01	CHORDC1	ENST00000320585.6,ENST00000525317.1,ENST00000529987.1,ENST00000457199.2,ENST00000533724.1	chr11	89936475:89936595:89938627:89938733:89939369:89939440,	89938628	89938733	89938668	89938668	Frame_Shift_Del	C	-	p.G210fs
BRCA	TCGA-D8-A1JK-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122773035:122773088:122794308:122794429:122801295:122801402,	122794309	122794429	122794401	122794402	Frame_Shift_Del	TC	-	p.K1157fs
BRCA	TCGA-D8-A1JK-01	CLNS1A	ENST00000532069.1	chr11	77330650:77330740:77333544:77333718:77336007:77336076,77330650:77330740:77333544:77333718:77340807:77340944,	77333545	77333718	77333553	77333554	Frame_Shift_Del	TC	-	p.D213fs
BRCA	TCGA-A2-A0CP-01	CMIP	ENST00000537098.3,ENST00000539778.2,ENST00000561605.1,ENST00000398040.4,ENST00000566513.1	chr16	81737543:81737690:81739103:81739209:81740618:81740689,	81739104	81739209	81739192	81739193	Frame_Shift_Del	GC	-	p.G727fs
BRCA	TCGA-B6-A0IO-01	COASY	ENST00000421097.2	chr17	40714168:40714237:40714629:40715340:40715978:40716193,	40714630	40715340	40714751	40714752	Frame_Shift_Ins	-	T	p.Y66fs
BRCA	TCGA-B6-A0IO-01	COASY	ENST00000420359.1	chr17	40714168:40714237:40714373:40715340:40715978:40716193,	40714374	40715340	40714751	40714752	Frame_Shift_Ins	-	T	p.Y66fs
BRCA	TCGA-A2-A04R-01	COL18A1	ENST00000400337.2	chr21	46825293:46825388:46888155:46888700:46893808:46893895,	46888156	46888700	46888640	46888652	Frame_Shift_Del	GGAGCCTGGCGCC	-	p.E613fs
BRCA	TCGA-B6-A0IB-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000471582.1,ENST00000422202.1	chr20	61959430:61959497:61959682:61959850:61960936:61961013,	61959683	61959850	61959802	61959803	Frame_Shift_Ins	-	T	p.V1246fs
BRCA	TCGA-E9-A1NC-01	COLQ	ENST00000383787.2	chr3	15516931:15516994:15518632:15518704:15520844:15520881,	15518633	15518704	15518687	15518688	Frame_Shift_Ins	-	G	p.G138fs
BRCA	TCGA-AN-A0AT-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3820570:3820987:3823751:3823931:3824569:3824694,	3823752	3823931	3823824	3823825	Frame_Shift_Ins	-	T	p.N797fs
BRCA	TCGA-E2-A1L7-01	CSAD	ENST00000424845.1	chr12	53564206:53564286:53565109:53565225:53565665:53565772,53564206:53564286:53565109:53565225:53565661:53565772,	53565110	53565225	53565185	53565188	Frame_Shift_Del	GCGG	-	p.R191fs
BRCA	TCGA-E2-A1L7-01	CSAD	ENST00000475890.1	chr12	53564206:53564286:53565056:53565225:53565665:53565772,	53565057	53565225	53565185	53565188	Frame_Shift_Del	GCGG	-	p.R191fs
BRCA	TCGA-E2-A1L7-01	CSAD	ENST00000454442.1	chr12	53564206:53564286:53564960:53565225:53565665:53565772,	53564961	53565225	53565185	53565188	Frame_Shift_Del	GCGG	-	p.R191fs
BRCA	TCGA-E2-A1L9-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67644817	67644830	Frame_Shift_Del	CGCCGGGAAGGGGG	-	p.R28fs
BRCA	TCGA-AO-A12B-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67644796	67644799	Frame_Shift_Del	GAGA	-	p.K23fs
BRCA	TCGA-A2-A0T4-01	CTPS2	ENST00000380241.3,ENST00000443824.1,ENST00000359276.4	chrX	16711493:16711610:16716358:16716459:16717045:16717216,	16716359	16716459	16716365	16716365	Frame_Shift_Del	A	-	p.I145fs
BRCA	TCGA-AO-A1KR-01	CTU2	ENST00000312060.5,ENST00000378384.3,ENST00000453996.2,ENST00000567949.1,ENST00000566637.1,ENST00000564584.1,ENST00000564105.1	chr16	88780054:88780186:88780543:88780635:88780790:88780894,	88780544	88780635	88780635	88780636	Frame_Shift_Ins	-	GTGT	p.T367fs
BRCA	TCGA-D8-A27W-01	CTU2	ENST00000312060.5,ENST00000378384.3,ENST00000453996.2,ENST00000567949.1,ENST00000566637.1,ENST00000564584.1,ENST00000564105.1	chr16	88780054:88780186:88780543:88780635:88780790:88780894,	88780544	88780635	88780635	88780636	Frame_Shift_Ins	-	GTGT	p.T367fs
BRCA	TCGA-E2-A1LS-01	CTU2	ENST00000312060.5,ENST00000378384.3,ENST00000453996.2,ENST00000567949.1,ENST00000566637.1,ENST00000564584.1,ENST00000564105.1	chr16	88780054:88780186:88780543:88780635:88780790:88780894,	88780544	88780635	88780635	88780636	Frame_Shift_Ins	-	GTGT	p.T367fs
BRCA	TCGA-EW-A1J3-01	CTU2	ENST00000312060.5,ENST00000378384.3,ENST00000453996.2,ENST00000567949.1,ENST00000566637.1,ENST00000564584.1,ENST00000564105.1	chr16	88780054:88780186:88780543:88780635:88780790:88780894,	88780544	88780635	88780635	88780636	Frame_Shift_Ins	-	GTGT	p.T367fs
BRCA	TCGA-BH-A0AZ-01	CUBN	ENST00000377833.4	chr10	16882883:16883046:16893233:16893442:16911634:16911852,	16893234	16893442	16893319	16893322	Frame_Shift_Del	ACAG	-	p.P3192fs
BRCA	TCGA-AO-A12A-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107300004	107300005	Frame_Shift_Ins	-	T	p.Y318fs
BRCA	TCGA-A2-A0YD-01	CYFIP2	ENST00000347377.6,ENST00000377576.3,ENST00000541131.1,ENST00000522463.1,ENST00000523119.1,ENST00000517753.1,ENST00000523969.1,ENST00000521420.1,ENST00000519663.1,ENST00000520759.1,ENST00000523383.1,ENST00000435847.2,ENST00000442283.2,ENST00000318218.6,ENST00000519153.1	chr5	156816196:156816435:156817528:156817676:156819840:156820215,	156817529	156817676	156817668	156817671	Frame_Shift_Del	AAGA	-	p.K1196fs
BRCA	TCGA-AO-A0J6-01	CYP2D6	ENST00000488442.1,ENST00000360608.5	chr22	42524785:42524946:42525034:42525187:42525739:42525911,	42525035	42525187	42525144	42525145	Frame_Shift_Ins	-	T	p.R133fs
BRCA	TCGA-AN-A041-01	DALRD3	ENST00000313778.5,ENST00000484831.1,ENST00000341949.4,ENST00000420952.2,ENST00000441576.2,ENST00000395462.4,ENST00000440857.1,ENST00000460505.1	chr3	49054866:49054946:49055045:49055302:49055455:49055466,	49055046	49055302	49055227	49055227	Frame_Shift_Del	C	-	p.W179fs
BRCA	TCGA-E2-A15M-01	DCT	ENST00000483392.2,ENST00000377028.5,ENST00000446125.1	chr13	95112344:95112480:95114263:95114443:95117886:95118053,	95114264	95114443	95114308	95114318	Frame_Shift_Del	CTTCTGGAGAG	-	p.S330fs
BRCA	TCGA-A8-A085-01	DDX11	ENST00000407793.2,ENST00000251758.5,ENST00000350437.4,ENST00000542838.1,ENST00000228264.6,ENST00000438391.2,ENST00000545668.1,ENST00000545717.1	chr12	31242002:31242085:31242336:31242424:31242819:31242933,	31242337	31242424	31242378	31242381	Frame_Shift_Del	GCAG	-	p.Q279fs
BRCA	TCGA-BH-A0C7-01	DDX43	ENST00000370336.4	chr6	74123380:74123508:74123692:74123802:74124270:74124409,	74123693	74123802	74123768	74123768	Frame_Shift_Del	A	-	p.D525fs
BRCA	TCGA-AR-A0TV-01	DEAF1	ENST00000382409.3	chr11	644233:644654:653961:654051:674535:674783,	653962	654051	654011	654012	Frame_Shift_Ins	-	A	p.C515fs
BRCA	TCGA-EW-A1PE-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153906610:153906778:153907235:153907440:153908535:153908664,	153907236	153907440	153907305	153907306	Frame_Shift_Ins	-	C	p.Q901fs
BRCA	TCGA-A2-A0YD-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380427.1	chr9	19360241:19360487:19361843:19361961:19369834:19369985,	19361844	19361961	19361904	19361904	Frame_Shift_Del	A	-	p.N1538fs
BRCA	TCGA-B6-A0RQ-01	DEPDC1	ENST00000370966.5,ENST00000525124.1,ENST00000489862.1,ENST00000456315.2	chr1	68952623:68952667:68954056:68954187:68954598:68954717,	68954057	68954187	68954121	68954121	Frame_Shift_Del	T	-	p.Q219fs
BRCA	TCGA-B6-A0RL-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948337	169948337	Frame_Shift_Del	A	-	p.I204fs
BRCA	TCGA-A2-A0CW-01	DMKN	ENST00000440396.1,ENST00000424570.2,ENST00000451297.2,ENST00000339686.3,ENST00000447113.2,ENST00000418261.1	chr19	36001085:36001154:36002312:36002495:36002664:36002715,	36002313	36002495	36002403	36002404	Frame_Shift_Del	GC	-	p.S276fs
BRCA	TCGA-B6-A0RV-01	DNALI1	ENST00000296218.7	chr1	38023203:38023349:38024927:38025097:38027157:38027336,	38024928	38025097	38024964	38024964	Frame_Shift_Del	G	-	p.V111fs
BRCA	TCGA-B6-A0I9-01	DNASE2	ENST00000222219.3	chr19	12989195:12989393:12989483:12989648:12991615:12991694,	12989484	12989648	12989580	12989580	Frame_Shift_Del	C	-	p.A139fs
BRCA	TCGA-E9-A22G-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4	chr19	10274001:10274036:10277273:10277361:10279005:10279040,	10277274	10277361	10277360	10277378	Frame_Shift_Del	TTCTGTCACAGAAGACAAC	-	p.P270fs
BRCA	TCGA-AN-A0XU-01	DOCK6	ENST00000590680.1,ENST00000294618.7,ENST00000319867.7	chr19	11348131:11348233:11348316:11348455:11348720:11348763,	11348317	11348455	11348396	11348396	Frame_Shift_Del	T	-	p.H631fs
BRCA	TCGA-A8-A06U-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	428361:428496:429701:429854:432165:432324,	429702	429854	429793	429793	Frame_Shift_Del	C	-	p.R1455fs
BRCA	TCGA-A8-A097-01	DPAGT1	ENST00000414373.1	chr11	118967667:118967773:118967851:118968007:118969112:118969145,	118967852	118968007	118967894	118967894	Frame_Shift_Del	G	-	p.I374fs
BRCA	TCGA-AO-A03T-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473071	56473086	Frame_Shift_Del	TGACTTGAGAACTTTC	-	p.E1903fs
BRCA	TCGA-A8-A084-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103228970:103229087:103270390:103270600:103306670:103306760,	103270391	103270600	103270428	103270429	Frame_Shift_Ins	-	CGAT	p.Q4075fs
BRCA	TCGA-BH-A0DD-01	E2F3	ENST00000535432.1,ENST00000346618.3	chr6	20486919:20487034:20488343:20488479:20490398:20493789,	20488344	20488479	20488429	20488432	Frame_Shift_Del	AAAC	-	p.N364fs
BRCA	TCGA-A8-A07R-01	EBPL	ENST00000378284.2	chr13	50234969:50235344:50237192:50237331:50243912:50243978,50236038:50236063:50237192:50237331:50243912:50243982,	50237193	50237331	50237261	50237271	Frame_Shift_Del	CAGAATTTCCA	-	p.V101fs
BRCA	TCGA-A2-A0YF-01	ECHDC2	ENST00000487866.1,ENST00000486170.2,ENST00000536120.1,ENST00000479593.1,ENST00000476477.2,ENST00000371522.4	chr1	53370460:53370505:53370705:53370762:53373539:53373626,53370460:53370505:53370705:53370762:53372190:53372283,	53370706	53370762	53370727	53370728	Frame_Shift_Ins	-	C	p.R133fs
BRCA	TCGA-A2-A0YF-01	ECHDC2	ENST00000460612.1	chr1	53370460:53370505:53370705:53372283:53373539:53373626,	53370706	53372283	53370727	53370728	Frame_Shift_Ins	-	C	p.R133fs
BRCA	TCGA-C8-A26X-01	EEF1A1	ENST00000331523.2,ENST00000309268.6,ENST00000316292.9	chr6	74227243:74227657:74227752:74227987:74228076:74228258,	74227753	74227987	74227785	74227786	Frame_Shift_Ins	-	A	p.C411fs
BRCA	TCGA-AR-A1AV-01	EIF3I	ENST00000373586.1,ENST00000483517.1,ENST00000474371.1	chr1	32694099:32694210:32694327:32694417:32694735:32694809,	32694328	32694417	32694368	32694369	Frame_Shift_Del	GG	-	p.R227fs
BRCA	TCGA-A8-A09G-01	EIF4A2	ENST00000492144.1,ENST00000426808.1,ENST00000429589.1,ENST00000323963.5,ENST00000443963.1,ENST00000425053.1,ENST00000475653.1,ENST00000440191.2,ENST00000468362.1,ENST00000356531.5	chr3	186503952:186504062:186504290:186504434:186504915:186505053,	186504291	186504434	186504350	186504351	Frame_Shift_Del	GA	-	p.D231fs
BRCA	TCGA-D8-A1XR-01	EIF4ENIF1	ENST00000397525.1,ENST00000344710.5,ENST00000397520.1,ENST00000397518.1,ENST00000397523.1,ENST00000423097.1,ENST00000330125.5	chr22	31864267:31864288:31867829:31867903:31884608:31884731,	31867830	31867903	31867837	31867838	Frame_Shift_Ins	-	T	p.Y54fs
BRCA	TCGA-A8-A08L-01	ELF1	ENST00000239882.3	chr13	41525464:41525572:41532971:41533152:41556118:41556378,	41532972	41533152	41533123	41533124	Frame_Shift_Ins	-	A	p.I35fs
BRCA	TCGA-AN-A0XP-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234058	95234064	Frame_Shift_Del	CCTTATG	-	p.H469fs
BRCA	TCGA-E2-A109-01	ELP3	ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000542181.1,ENST00000537665.1,ENST00000523687.1,ENST00000524103.1,ENST00000520110.1,ENST00000519261.1,ENST00000521015.1	chr8	27989794:27989921:27995214:27995408:28013458:28013549,	27995215	27995408	27995267	27995267	Frame_Shift_Del	C	-	p.L321fs
BRCA	TCGA-C8-A135-01	EML4	ENST00000402711.2,ENST00000409040.1,ENST00000401738.3	chr2	42396600:42396776:42472644:42472827:42483640:42483770,	42472645	42472827	42472741	42472742	Frame_Shift_Ins	-	A	p.A43fs
BRCA	TCGA-E2-A14Q-01	EML5	ENST00000553526.1,ENST00000553281.1,ENST00000380664.5,ENST00000554922.1	chr14	89093181:89093390:89093989:89094163:89100812:89100833,	89093990	89094163	89094085	89094085	Frame_Shift_Del	C	-	p.G1479fs
BRCA	TCGA-A2-A0T0-01	EPN2	ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000314728.5	chr17	19232873:19232960:19235165:19235381:19237268:19237643,	19235166	19235381	19235190	19235211	Frame_Shift_Del	CCCAAAACAATGGAACTACCAG	-	p.Q480fs
BRCA	TCGA-BH-A0EE-01	ERGIC1	ENST00000393784.3	chr5	172353511:172353572:172359438:172359539:172362190:172362313,	172359439	172359539	172359501	172359502	Frame_Shift_Ins	-	CT	p.K202fs
BRCA	TCGA-E2-A10A-01	ESR1	ENST00000440973.1	chr6	152023009:152023140:152128977:152129499:152163731:152163922,	152128978	152129499	152129128	152129131	Frame_Shift_Del	CCGT	-	p.P29fs
BRCA	TCGA-BH-A0H6-01	EWSR1	ENST00000415761.1,ENST00000485037.1,ENST00000397938.2,ENST00000414183.2,ENST00000333395.6,ENST00000447973.1,ENST00000331029.7,ENST00000437155.2,ENST00000332035.6,ENST00000483415.1,ENST00000455726.1,ENST00000436425.1,ENST00000406548.1,ENST00000332050.6	chr22	29664314:29664338:29668204:29668241:29668368:29668420,	29668205	29668241	29668221	29668221	Frame_Shift_Del	C	-	p.Q11fs
BRCA	TCGA-B6-A0RE-01	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28574385	28574386	Frame_Shift_Ins	-	C	p.H271fs
BRCA	TCGA-EW-A1PD-01	FADS1	ENST00000542506.1,ENST00000433932.1,ENST00000350997.7	chr11	61574135:61574196:61578222:61578351:61578445:61578547,	61578223	61578351	61578278	61578287	Frame_Shift_Del	GGGTCTTTGC	-	p.R284fs
BRCA	TCGA-E2-A15T-01	FAM83G	ENST00000585154.2,ENST00000345041.4,ENST00000399096.2,ENST00000388995.6	chr17	18882861:18882986:18891559:18891727:18906832:18907093,	18891560	18891727	18891586	18891586	Frame_Shift_Del	C	-	p.A222fs
BRCA	TCGA-BH-A0WA-01	FBXW4	ENST00000331272.7,ENST00000457105.2	chr10	103427642:103427737:103432671:103432804:103433244:103433430,	103432672	103432804	103432723	103432724	Frame_Shift_Del	CA	-	p.V208fs
BRCA	TCGA-A8-A09E-01	FCAR	ENST00000391724.3,ENST00000391725.3,ENST00000482092.2	chr19	55396646:55396937:55399373:55399595:55401014:55401229,	55399374	55399595	55399582	55399582	Frame_Shift_Del	C	-	p.Y191fs
BRCA	TCGA-A8-A09E-01	FCAR	ENST00000359272.4,ENST00000355524.3	chr19	55396646:55396937:55399373:55399661:55401014:55401229,	55399374	55399661	55399582	55399582	Frame_Shift_Del	C	-	p.Y191fs
BRCA	TCGA-A8-A09E-01	FCAR	ENST00000391723.3	chr19	55396646:55396937:55399373:55399587:55401014:55401229,	55399374	55399587	55399582	55399582	Frame_Shift_Del	C	-	p.Y191fs
BRCA	TCGA-BH-A0DK-01	FHDC1	ENST00000511601.1,ENST00000260008.3	chr4	153889131:153889249:153893528:153893693:153895826:153900838,	153893529	153893693	153893569	153893570	Frame_Shift_Del	AA	-	p.Q420fs
BRCA	TCGA-D8-A1X8-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
BRCA	TCGA-D8-A1X8-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
BRCA	TCGA-A2-A0ST-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
BRCA	TCGA-A2-A0ST-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
BRCA	TCGA-A8-A090-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58139101:58139368:58140517:58140655:58141686:58141802,	58140518	58140655	58140575	58140576	Frame_Shift_Ins	-	G	p.S2234fs
BRCA	TCGA-E9-A1NI-01	FLT3LG	ENST00000600429.1,ENST00000597551.1,ENST00000204637.2,ENST00000600084.1,ENST00000594009.1,ENST00000595510.1	chr19	49979679:49979823:49982165:49982304:49983554:49983733,	49982166	49982304	49982165	49982166	Frame_Shift_Ins	-	C	p.S118fs
BRCA	TCGA-EW-A1P6-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108984960	108984964	Frame_Shift_Del	CTTCC	-	p.D308fs
BRCA	TCGA-AQ-A04J-01	FOXP4	ENST00000373060.1,ENST00000307972.4,ENST00000373057.3	chr6	41557508:41557592:41557700:41557908:41558008:41558085,	41557701	41557908	41557744	41557745	Frame_Shift_Del	TC	-	p.S399fs
BRCA	TCGA-AQ-A04J-01	FOXP4	ENST00000409208.1,ENST00000373063.3	chr6	41557508:41557592:41557736:41557908:41558008:41558085,	41557737	41557908	41557744	41557745	Frame_Shift_Del	TC	-	p.S399fs
BRCA	TCGA-A1-A0SO-01	FRY	ENST00000380250.3	chr13	32813847:32814018:32818178:32818319:32821459:32821639,	32818179	32818319	32818202	32818218	Frame_Shift_Del	TGTGCAGCAGCCCCTGC	-	p.V2238fs
BRCA	TCGA-E9-A1RF-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111471	8111472	Frame_Shift_Ins	-	T	p.C320fs
BRCA	TCGA-AO-A0J5-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111494	8111495	Frame_Shift_Ins	-	CTGGAGG	p.R331fs
BRCA	TCGA-C8-A1HO-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111494	8111495	Frame_Shift_Ins	-	CTGGAGG	p.R331fs
BRCA	TCGA-E9-A1NI-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111496	8111497	Frame_Shift_Ins	-	GGAG	p.R331fs
BRCA	TCGA-C8-A273-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111513	8111514	Frame_Shift_Ins	-	G	p.D335fs
BRCA	TCGA-E9-A1NA-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111513	8111514	Frame_Shift_Ins	-	G	p.D335fs
BRCA	TCGA-E9-A1RA-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111543	8111544	Frame_Shift_Ins	-	TACTGAA	p.Y345fs
BRCA	TCGA-D8-A27K-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111558	8111559	Frame_Shift_Ins	-	AATA	p.I350fs
BRCA	TCGA-AN-A041-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111498	8111499	Frame_Shift_Del	GA	-	p.R330fs
BRCA	TCGA-E2-A155-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111501	8111502	Frame_Shift_Ins	-	A	p.R330fs
BRCA	TCGA-AR-A0TQ-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111503	8111504	Frame_Shift_Ins	-	C	p.R331fs
BRCA	TCGA-BH-A0C7-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111506	8111507	Frame_Shift_Del	AT	-	p.N332fs
BRCA	TCGA-AN-A0AM-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111507	8111508	Frame_Shift_Ins	-	G	p.A332fs
BRCA	TCGA-A2-A0D3-01	GATA3	ENST00000461472.1	chr10	8100361:8100804:8111435:8111561:8115701:8116027,	8111436	8111561	8111543	8111544	Frame_Shift_Ins	-	T	p.Y344fs
BRCA	TCGA-BH-A209-01	GLCCI1	ENST00000489405.1,ENST00000438949.1,ENST00000414914.1,ENST00000223145.5,ENST00000474269.1	chr7	8095136:8095179:8099725:8099878:8110550:8110578,	8099726	8099878	8099783	8099784	Frame_Shift_Del	TC	-	p.S291fs
BRCA	TCGA-E9-A1NI-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862228	4862229	Frame_Shift_Ins	-	C	p.R380fs
BRCA	TCGA-AN-A0FF-01	GNAS	ENST00000419558.1	chr20	57466844:57466920:57470666:57470739:57478585:57478611,57415558:57415941:57470666:57470739:57478585:57478611,	57470667	57470739	57470704	57470705	Frame_Shift_Ins	-	A	p.M702fs
BRCA	TCGA-E9-A1NI-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466642	109466643	Frame_Shift_Ins	-	C	p.N543fs
BRCA	TCGA-A1-A0SO-01	GRIA1	ENST00000448073.4,ENST00000340592.5,ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153078426:153078633:153085256:153085627:153143993:153144192,	153085257	153085627	153085287	153085303	Frame_Shift_Del	ATCACTTTGGTCCGGGA	-	p.I495fs
BRCA	TCGA-A8-A08J-01	GTF2IRD2B	ENST00000394939.3,ENST00000430511.2,ENST00000423666.1,ENST00000472837.1,ENST00000312575.7,ENST00000356115.5	chr7	74552591:74552657:74554757:74554835:74556909:74556993,	74554758	74554835	74554778	74554779	Frame_Shift_Ins	-	T	p.T299fs
BRCA	TCGA-E9-A1N8-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000473533.2,ENST00000395187.2,ENST00000427635.2	chr10	69692353:69692537:69695909:69695992:69699344:69699408,	69695910	69695992	69695914	69695917	Frame_Shift_Del	TTTG	-	p.Q891fs
BRCA	TCGA-A8-A08R-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000395187.2,ENST00000427635.2,ENST00000463478.1,ENST00000412272.2	chr10	69792575:69792626:69793721:69793943:69797849:69797926,	69793722	69793943	69793826	69793829	Frame_Shift_Del	TGCA	-	p.M193fs
BRCA	TCGA-A2-A04P-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29912029	29912029	Frame_Shift_Del	G	-	p.D251fs
BRCA	TCGA-C8-A12X-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29912029	29912029	Frame_Shift_Del	G	-	p.D251fs
BRCA	TCGA-A8-A09K-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324601	31324602	Frame_Shift_Ins	-	A	p.E69fs
BRCA	TCGA-A8-A09K-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324601	31324602	Frame_Shift_Ins	-	A	p.E69fs
BRCA	TCGA-AR-A255-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
BRCA	TCGA-AR-A255-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
BRCA	TCGA-E9-A1RI-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
BRCA	TCGA-E9-A1RI-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
BRCA	TCGA-E9-A248-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
BRCA	TCGA-E9-A248-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
BRCA	TCGA-BH-A1EX-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549402	32549403	Frame_Shift_Ins	-	T	p.R195fs
BRCA	TCGA-BH-A201-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549402	32549403	Frame_Shift_Ins	-	T	p.R195fs
BRCA	TCGA-EW-A1P1-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549402	32549403	Frame_Shift_Ins	-	T	p.R195fs
BRCA	TCGA-BH-A0AU-01	HLA-G	ENST00000428701.1,ENST00000376828.2,ENST00000360323.6,ENST00000478355.1	chr6	29795823:29796093:29796319:29796595:29797194:29797348,	29796320	29796595	29796435	29796435	Frame_Shift_Del	C	-	p.L154fs
BRCA	TCGA-E9-A1NI-01	HPS1	ENST00000338546.5,ENST00000361490.4,ENST00000325103.6	chr10	100189329:100189399:100189547:100189646:100190327:100190421,	100189548	100189646	100189562	100189563	Frame_Shift_Ins	-	C	p.S284fs
BRCA	TCGA-BH-A1F6-01	HPX	ENST00000265983.3	chr11	6458278:6458407:6458669:6458882:6459585:6459706,	6458670	6458882	6458782	6458800	Frame_Shift_Del	GCGGCCCAGCCATCTCAGG	-	p.L192fs
BRCA	TCGA-A8-A08O-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44216366:44216513:44217113:44217320:44217411:44217571,	44217114	44217320	44217181	44217197	Frame_Shift_Del	AAATTGACATCATCCCC	-	p.I73fs
BRCA	TCGA-E2-A1IH-01	HSPD1	ENST00000440114.1	chr2	198361863:198362116:198363445:198363574:198364505:198364541,	198363446	198363574	198363536	198363537	Frame_Shift_Ins	-	T	p.P12fs
BRCA	TCGA-E2-A1IH-01	HSPD1	ENST00000461097.1,ENST00000476746.1	chr2	198362040:198362116:198363398:198363574:198364505:198364541,	198363399	198363574	198363536	198363537	Frame_Shift_Ins	-	T	p.P12fs
BRCA	TCGA-A8-A07R-01	HSPG2	ENST00000374695.3	chr1	22155327:22155572:22155875:22156097:22156485:22156584,	22155876	22156097	22155911	22155911	Frame_Shift_Del	C	-	p.G3986fs
BRCA	TCGA-A2-A0SU-01	IFT122	ENST00000512814.1,ENST00000504021.1,ENST00000509522.1	chr3	129202327:129202525:129207099:129207240:129214288:129214330,	129207100	129207240	129207141	129207141	Frame_Shift_Del	G	-	p.E683fs
BRCA	TCGA-BH-A0AY-01	IFT140	ENST00000397417.2,ENST00000565298.1,ENST00000439987.2,ENST00000426508.2	chr16	1613997:1614163:1616161:1616292:1618217:1618335,	1616162	1616292	1616239	1616240	Frame_Shift_Del	TG	-	p.T608fs
BRCA	TCGA-E9-A1NI-01	IGFN1	ENST00000437879.2,ENST00000451870.2,ENST00000295591.8,ENST00000335211.4	chr1	201172865:201173034:201174209:201174482:201175210:201175262,	201174210	201174482	201174401	201174402	Frame_Shift_Ins	-	G	p.A372fs
BRCA	TCGA-AN-A0XO-01	IL1R2	ENST00000493749.1	chr2	102615456:102615578:102624976:102625104:102626023:102626288,102608421:102608495:102624976:102625104:102626023:102626102,102608421:102608473:102624976:102625104:102626023:102626102,	102624977	102625104	102625086	102625089	Frame_Shift_Del	CAGC	-	p.Q17fs
BRCA	TCGA-AR-A0U4-01	IL6	ENST00000406575.1,ENST00000404625.1,ENST00000426291.1,ENST00000258743.5	chr7	22766858:22766900:22767062:22767253:22768311:22768425,	22767063	22767253	22767081	22767081	Frame_Shift_Del	C	-	p.F14fs
BRCA	TCGA-E9-A1NI-01	ILF3	ENST00000592763.1,ENST00000250241.8,ENST00000420083.1,ENST00000590261.1,ENST00000318511.3,ENST00000593061.1,ENST00000449870.1,ENST00000407004.3,ENST00000589998.1,ENST00000587928.1,ENST00000588657.1	chr19	10794193:10794218:10794311:10794465:10794592:10794646,	10794312	10794465	10794365	10794366	Frame_Shift_Ins	-	C	p.N641fs
BRCA	TCGA-BH-A0E9-01	INTS4	ENST00000534064.1,ENST00000529807.1	chr11	77692504:77692622:77702153:77702345:77705635:77705699,	77702154	77702345	77702264	77702265	Frame_Shift_Ins	-	T	p.A45fs
BRCA	TCGA-E9-A226-01	IQGAP1	ENST00000268182.5	chr15	90934005:90934105:90969341:90969498:90972820:90972898,	90969342	90969498	90969467	90969470	Frame_Shift_Del	AAAT	-	p.K94fs
BRCA	TCGA-A8-A09K-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000430709.1,ENST00000261023.3	chr2	187534427:187534541:187540330:187540444:187540546:187540654,	187540331	187540444	187540366	187540381	Frame_Shift_Del	CCAAGTTGGGAGATTA	-	p.C914fs
BRCA	TCGA-B6-A0I9-01	IVNS1ABP	ENST00000392007.3,ENST00000367498.3,ENST00000459929.1,ENST00000468217.1,ENST00000475046.1,ENST00000480769.1,ENST00000494880.1	chr1	185269228:185269262:185269348:185269475:185269568:185269690,	185269349	185269475	185269464	185269465	Frame_Shift_Del	AT	-	p.Y418fs
BRCA	TCGA-AO-A03T-01	JTB	ENST00000271843.4,ENST00000356648.1,ENST00000428469.1,ENST00000368589.1	chr1	153947157:153947311:153948301:153948381:153949168:153949247,	153948302	153948381	153948314	153948314	Frame_Shift_Del	T	-	p.N91fs
BRCA	TCGA-A8-A06Y-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44896899:44896934:44910953:44911047:44913073:44913200,	44910954	44911047	44911035	44911035	Frame_Shift_Del	T	-	p.L246fs
BRCA	TCGA-A8-A09W-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600498	10600499	Frame_Shift_Ins	-	T	p.V452fs
BRCA	TCGA-A8-A09W-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600502	10600502	Frame_Shift_Del	G	-	p.L452fs
BRCA	TCGA-AO-A0JG-01	KLC4	ENST00000347162.5,ENST00000458460.2,ENST00000453940.2,ENST00000479388.1,ENST00000394058.1,ENST00000470728.1,ENST00000259708.3,ENST00000467906.1,ENST00000394056.2	chr6	43033357:43033439:43034043:43034263:43034733:43034821,	43034044	43034263	43034120	43034120	Frame_Shift_Del	C	-	p.L235fs
BRCA	TCGA-D8-A27N-01	KLHL3	ENST00000506873.1	chr5	136963985:136964126:136969725:136969854:136974641:136974839,	136969726	136969854	136969761	136969762	Frame_Shift_Del	TA	-	p.Y472fs
BRCA	TCGA-A8-A081-01	KRT19	ENST00000593096.1,ENST00000361566.3,ENST00000455635.1	chr17	39680770:39680792:39681094:39681251:39681442:39681525,	39681095	39681251	39681142	39681143	Frame_Shift_Ins	-	G	p.E204fs
BRCA	TCGA-A8-A07P-01	L3MBTL4	ENST00000284898.6,ENST00000400105.2	chr18	5969391:5969561:6080879:6080950:6093353:6093527,6029385:6032274:6080879:6080950:6093353:6093527,6046726:6046753:6080879:6080950:6093353:6093527,	6080880	6080950	6080916	6080917	Frame_Shift_Ins	-	T	p.G469fs
BRCA	TCGA-AR-A0TY-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21424972:21425088:21426260:21426472:21427427:21427632,	21426261	21426472	21426463	21426463	Frame_Shift_Del	C	-	p.R1308fs
BRCA	TCGA-A8-A06O-01	LARP4B	ENST00000316157.3	chr10	875620:875674:876806:876917:882342:882446,	876807	876917	876875	876875	Frame_Shift_Del	T	-	p.I265fs
BRCA	TCGA-AR-A1AI-01	LCTL	ENST00000537670.1,ENST00000341509.5	chr15	66850319:66850374:66853343:66853439:66853524:66853653,	66853344	66853439	66853439	66853439	Frame_Shift_Del	C	-	p.A204fs
BRCA	TCGA-E9-A1NI-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000435201.1	chr7	73534912:73534968:73535221:73535379:73535468:73535631,	73535222	73535379	73535322	73535323	Frame_Shift_Ins	-	C	p.S578fs
BRCA	TCGA-AN-A0FS-01	LPGAT1	ENST00000366996.1,ENST00000366997.4	chr1	211952341:211952386:211956570:211956844:211960973:211961069,	211956571	211956844	211956599	211956600	Frame_Shift_Ins	-	CT	p.S233fs
BRCA	TCGA-AN-A0XN-01	LRCH3	ENST00000441090.2,ENST00000414675.2,ENST00000438796.2,ENST00000425562.2,ENST00000334859.4	chr3	197553748:197553885:197556434:197556544:197557640:197557734,	197556435	197556544	197556459	197556466	Frame_Shift_Del	ATATTTAA	-	p.F269fs
BRCA	TCGA-E9-A1NI-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169997024	169997025	Frame_Shift_Ins	-	G	p.C4381fs
BRCA	TCGA-BH-A0HW-01	LRP3	ENST00000253193.7,ENST00000592484.1	chr19	33693753:33693892:33695543:33695758:33696151:33696197,	33695544	33695758	33695733	33695733	Frame_Shift_Del	G	-	p.G151fs
BRCA	TCGA-B6-A0IQ-01	LRRC2	ENST00000395905.3,ENST00000296144.3	chr3	46580534:46580691:46586535:46586743:46592956:46593100,	46586536	46586743	46586694	46586709	Frame_Shift_Del	GGATGCCCTTCCTCCT	-	p.R54fs
BRCA	TCGA-AR-A1AQ-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746067:46746232:46746796:46747057:46751033:46752171,	46746797	46747057	46746855	46746855	Frame_Shift_Del	A	-	p.G567fs
BRCA	TCGA-A8-A07R-01	LRSAM1	ENST00000373324.4,ENST00000323301.4,ENST00000472068.1,ENST00000300417.6,ENST00000373322.1,ENST00000483302.1,ENST00000498513.1	chr9	130243461:130243506:130245228:130245299:130248014:130248114,	130245229	130245299	130245270	130245271	Frame_Shift_Del	CT	-	p.T377fs
BRCA	TCGA-B6-A0RE-01	LSM4	ENST00000600289.2,ENST00000594828.3,ENST00000593564.2	chr19	18423470:18423512:18426833:18426875:18433827:18433870,	18426834	18426875	18426844	18426844	Frame_Shift_Del	T	-	p.N12fs
BRCA	TCGA-E9-A1N8-01	LZTR1	ENST00000479606.1,ENST00000215739.8,ENST00000452988.1,ENST00000389355.3,ENST00000463909.1	chr22	21350984:21351090:21351174:21351255:21351520:21351755,	21351175	21351255	21351200	21351201	Frame_Shift_Ins	-	GGCACTGGACATG	p.D788fs
BRCA	TCGA-A8-A075-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39797635	39797654	Frame_Shift_Del	ATAATCTGATTGACCAAGAT	-	p.N233fs
BRCA	TCGA-A2-A0T1-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000375695.2	chrX	51638751:51638856:51639504:51640173:51640303:51640367,	51639505	51640173	51639818	51639818	Frame_Shift_Del	G	-	p.W412fs
BRCA	TCGA-AO-A0JF-01	MAGED2	ENST00000375060.1,ENST00000218439.4,ENST00000396224.1,ENST00000375053.2,ENST00000375058.1,ENST00000375062.4,ENST00000347546.4,ENST00000375068.1	chrX	54839920:54839983:54841093:54841208:54841680:54842111,	54841094	54841208	54841196	54841197	Frame_Shift_Ins	-	T	p.A459fs
BRCA	TCGA-AC-A23C-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
BRCA	TCGA-BH-A0H9-01	MAOA	ENST00000542639.1,ENST00000338702.3	chrX	43601196:43601294:43603040:43603152:43603355:43603418,	43603041	43603152	43603045	43603046	Frame_Shift_Ins	-	T	p.R424fs
BRCA	TCGA-E9-A1NI-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984789	11984790	Frame_Shift_Ins	-	T	p.Y113fs
BRCA	TCGA-A2-A1G0-01	MAP2K4	ENST00000353533.5,ENST00000602686.1,ENST00000415385.3,ENST00000602375.1,ENST00000602811.1,ENST00000536413.2,ENST00000602305.1	chr17	12028610:12028688:12032455:12032604:12043155:12043201,	12032456	12032604	12032516	12032517	Frame_Shift_Del	AC	-	p.Q319fs
BRCA	TCGA-E2-A156-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984840	11984856	Frame_Shift_Del	CAGTTAAAGTAGGTGAT	-	p.A129fs
BRCA	TCGA-AN-A0XR-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602811.1,ENST00000581941.1,ENST00000602537.1	chr17	11924292:11924318:11998891:11999011:12013691:12013743,11958205:11958308:11998891:11999011:12011106:12011226,11984672:11984847:11998891:11999011:12011106:12011226,	11998892	11999011	11998971	11998972	Frame_Shift_Ins	-	C	p.Y160fs
BRCA	TCGA-AO-A03T-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602375.1,ENST00000582377.1,ENST00000602811.1,ENST00000582183.1,ENST00000579089.1,ENST00000602305.1,ENST00000581941.1,ENST00000602537.1	chr17	11998918:11999011:12011106:12011226:12013691:12013743,	12011107	12011226	12011108	12011109	Frame_Shift_Ins	-	T	p.D173fs
BRCA	TCGA-AR-A1AU-01	MAP2K4	ENST00000353533.5,ENST00000602686.1,ENST00000415385.3,ENST00000602375.1,ENST00000602811.1,ENST00000536413.2,ENST00000602305.1	chr17	12028610:12028688:12032455:12032604:12043155:12043201,	12032456	12032604	12032570	12032571	Frame_Shift_Ins	-	TC	p.S339fs
BRCA	TCGA-BH-A0DQ-01	MAP2K7	ENST00000397979.3,ENST00000397981.3,ENST00000397983.3	chr19	7974639:7974781:7974947:7975014:7975144:7975258,	7974948	7975014	7974955	7974956	Frame_Shift_Ins	-	TT	p.D93fs
BRCA	TCGA-E9-A1R6-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56171058	56171059	Frame_Shift_Ins	-	A	p.D630fs
BRCA	TCGA-BH-A1FG-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56171109	56171115	Frame_Shift_Del	CTGTCTA	-	p.V647fs
BRCA	TCGA-D8-A1XA-01	MAP3K1	ENST00000399503.3	chr5	56181779:56181890:56183204:56183347:56184052:56184184,	56183205	56183347	56183240	56183241	Frame_Shift_Ins	-	T	p.R1385fs
BRCA	TCGA-BH-A0DT-01	MAP3K1	ENST00000399503.3	chr5	56161166:56161283:56161655:56161804:56167736:56167858,	56161656	56161804	56161690	56161691	Frame_Shift_Ins	-	T	p.S397fs
BRCA	TCGA-B6-A0IO-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56170880	56170880	Frame_Shift_Del	G	-	p.G570fs
BRCA	TCGA-AN-A0AS-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56170931	56170932	Frame_Shift_Ins	-	T	p.S588fs
BRCA	TCGA-A7-A0DB-01	MAP3K1	ENST00000399503.3	chr5	56170858:56171137:56174806:56174928:56176537:56176629,	56174807	56174928	56174851	56174852	Frame_Shift_Ins	-	GC	p.E671fs
BRCA	TCGA-BH-A0BO-01	MAP3K1	ENST00000399503.3	chr5	56181779:56181890:56183204:56183347:56184052:56184184,	56183205	56183347	56183240	56183241	Frame_Shift_Ins	-	T	p.R1385fs
BRCA	TCGA-BH-A0BO-01	MAP3K1	ENST00000399503.3	chr5	56181779:56181890:56183204:56183347:56184052:56184184,	56183205	56183347	56183296	56183297	Frame_Shift_Ins	-	G	p.E1403fs
BRCA	TCGA-A8-A082-01	MAP3K1	ENST00000399503.3	chr5	56181779:56181890:56183204:56183347:56184052:56184184,	56183205	56183347	56183311	56183311	Frame_Shift_Del	A	-	p.Q1408fs
BRCA	TCGA-AO-A0JG-01	MAP3K13	ENST00000443863.1,ENST00000438053.1,ENST00000424227.1,ENST00000446828.1,ENST00000535426.1,ENST00000265026.3	chr3	185195113:185195184:185198019:185198317:185200142:185200244,	185198020	185198317	185198098	185198098	Frame_Shift_Del	G	-	p.G861fs
BRCA	TCGA-BH-A0BP-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470713	161470713	Frame_Shift_Del	G	-	p.V471fs
BRCA	TCGA-A8-A09M-01	MAPK8IP1	ENST00000241014.2,ENST00000395629.2	chr11	45921688:45922003:45923530:45923612:45923922:45924294,	45923531	45923612	45923586	45923595	Frame_Shift_Del	CTCGATCATC	-	p.R194fs
BRCA	TCGA-D8-A1JK-01	MARK2	ENST00000361128.5,ENST00000413835.2,ENST00000513765.2,ENST00000377809.4,ENST00000402010.2,ENST00000315032.8	chr11	63669669:63669802:63670072:63670254:63670532:63670604,	63670073	63670254	63670121	63670122	Frame_Shift_Del	AG	-	p.S396fs
BRCA	TCGA-D8-A1JK-01	MARK2	ENST00000377810.3,ENST00000408948.3,ENST00000350490.7,ENST00000502399.3,ENST00000425897.2,ENST00000508192.1,ENST00000509502.2	chr11	63669669:63669802:63670075:63670254:63670532:63670604,	63670076	63670254	63670121	63670122	Frame_Shift_Del	AG	-	p.S396fs
BRCA	TCGA-AO-A0J5-01	MBNL1	ENST00000498502.1	chr3	152165513:152165562:152177059:152177134:152180173:152180948,	152177060	152177134	152177106	152177106	Frame_Shift_Del	C	-	p.Q387fs
BRCA	TCGA-A1-A0SQ-01	MCCC1	ENST00000486226.1	chr3	182804480:182804576:182812346:182812393:182817139:182817283,182790214:182790275:182812346:182812393:182817139:182817283,182810196:182810333:182812346:182812393:182817139:182817283,	182812347	182812393	182812366	182812367	Frame_Shift_Ins	-	A	p.M39fs
BRCA	TCGA-E9-A22H-01	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619630	114619631	Frame_Shift_Ins	-	A	p.N98fs
BRCA	TCGA-D8-A1JK-01	MDM4	ENST00000391947.2,ENST00000454264.2,ENST00000463049.1,ENST00000507825.2,ENST00000367182.3,ENST00000470797.1,ENST00000470908.1,ENST00000367180.1	chr1	204494646:204494724:204495487:204495562:204499811:204499945,	204495488	204495562	204495552	204495553	Frame_Shift_Del	CT	-	p.T48fs
BRCA	TCGA-E9-A227-01	MED19	ENST00000431606.2,ENST00000528205.1	chr11	57472190:57472287:57472444:57472701:57479434:57479673,	57472445	57472701	57472466	57472467	Frame_Shift_Ins	-	C	p.F152fs
BRCA	TCGA-E2-A1BC-01	MED23	ENST00000368068.3,ENST00000539158.1,ENST00000368060.3	chr6	131931185:131931386:131937046:131937142:131939546:131939659,	131937047	131937142	131937129	131937129	Frame_Shift_Del	G	-	p.P265fs
BRCA	TCGA-B6-A0RU-01	MED27	ENST00000292035.5	chr9	134889723:134889854:134952828:134952973:134955028:134955253,	134952829	134952973	134952894	134952907	Frame_Shift_Del	CCAGGCTTAACAGC	-	p.L91fs
BRCA	TCGA-A8-A08H-01	MEFV	ENST00000537682.1,ENST00000538326.1	chr16	3299430:3299780:3304157:3304790:3306310:3306587,	3304158	3304790	3304392	3304392	Frame_Shift_Del	A	-	p.C226fs
BRCA	TCGA-A2-A0SW-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112765959:112766052:112767524:112767643:112776989:112777099,	112767525	112767643	112767613	112767631	Frame_Shift_Del	ACTTTATTCCCGATTGGAG	-	p.L684fs
BRCA	TCGA-AR-A0TU-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116312458:116312631:116339124:116340338:116371721:116371913,	116339125	116340338	116340222	116340223	Frame_Shift_Ins	-	T	p.M362fs
BRCA	TCGA-AR-A0TR-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60505148:60505198:60512592:60512653:60517977:60518117,	60512593	60512653	60512605	60512606	Frame_Shift_Ins	-	T	p.V208fs
BRCA	TCGA-BH-A18Q-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74899384:74899458:74900333:74900504:74901250:74901415,	74900334	74900504	74900382	74900395	Frame_Shift_Del	GTGGACGGCACCGA	-	p.D202fs
BRCA	TCGA-C8-A1HE-01	MGLL	ENST00000484451.1,ENST00000453507.2	chr3	127429462:127429508:127439895:127440006:127441272:127441409,127413817:127414033:127439895:127440006:127441272:127441409,	127439896	127440006	127439973	127439977	Frame_Shift_Del	TCTCT	-	p.E144fs
BRCA	TCGA-BH-A1FD-01	MICAL3	ENST00000498573.1	chr22	18304795:18304936:18305712:18305826:18310409:18310547,18304795:18304936:18305712:18305826:18314619:18314693,	18305713	18305826	18305741	18305742	Frame_Shift_Ins	-	G	p.G1094fs
BRCA	TCGA-A2-A04V-01	MIF4GD	ENST00000581777.1,ENST00000579119.1,ENST00000325102.8,ENST00000580717.1	chr17	73263670:73263711:73264163:73264273:73266194:73266258,73263904:73263982:73264163:73264273:73266194:73266258,	73264164	73264273	73264205	73264206	Frame_Shift_Del	AC	-	p.F85fs
BRCA	TCGA-AR-A24T-01	MKLN1	ENST00000352689.6,ENST00000494785.1,ENST00000458153.1,ENST00000421797.2	chr7	131122543:131122756:131128239:131128461:131130532:131130662,	131128240	131128461	131128391	131128394	Frame_Shift_Del	GAGA	-	p.E443fs
BRCA	TCGA-B6-A0IA-01	MMEL1	ENST00000288709.6,ENST00000504800.1,ENST00000469962.1,ENST00000378412.3,ENST00000502556.1	chr1	2524093:2524159:2524271:2524405:2525252:2525372,	2524272	2524405	2524333	2524334	Frame_Shift_Ins	-	C	p.Q638fs
BRCA	TCGA-EW-A1IX-01	MPP4	ENST00000409818.3	chr2	202528803:202528824:202528933:202529059:202531056:202531095,	202528934	202529059	202529007	202529008	Frame_Shift_Del	AC	-	p.C430fs
BRCA	TCGA-D8-A142-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269544	1269544	Frame_Shift_Del	A	-	p.T3815fs
BRCA	TCGA-BH-A0HL-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269750	1269750	Frame_Shift_Del	C	-	p.P3884fs
BRCA	TCGA-BH-A0H3-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1015877	1015880	Frame_Shift_Del	AGGG	-	p.H2307fs
BRCA	TCGA-BH-A0RX-01	MUC6	ENST00000421673.2	chr11	1018035:1018770:1019274:1019496:1020089:1020257,	1019275	1019496	1019367	1019368	Frame_Shift_Del	GC	-	p.A1313fs
BRCA	TCGA-BH-A0HQ-01	MYB	ENST00000525514.1,ENST00000533384.1,ENST00000528345.1,ENST00000525940.1,ENST00000529586.1,ENST00000526889.1,ENST00000525369.1,ENST00000526187.1,ENST00000534121.1,ENST00000528015.1,ENST00000531737.1,ENST00000533837.1,ENST00000442647.2,ENST00000529262.1,ENST00000531519.1,ENST00000526565.1,ENST00000528774.1,ENST00000438901.2,ENST00000528343.1,ENST00000534044.1,ENST00000420123.2,ENST00000339290.5,ENST00000463282.2,ENST00000341911.5,ENST00000527615.1,ENST00000430686.2,ENST00000533624.1,ENST00000525002.1,ENST00000367814.4,ENST00000531845.1,ENST00000367812.2,ENST00000528140.1,ENST00000525477.1,ENST00000533808.1,ENST00000526320.1,ENST00000316528.8	chr6	135510928:135511021:135511264:135511485:135513461:135513696,	135511265	135511485	135511376	135511377	Frame_Shift_Ins	-	CA	p.E141fs
BRCA	TCGA-A7-A13D-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16676139:16676263:16680055:16680213:16681417:16681612,	16680056	16680213	16680064	16680073	Frame_Shift_Del	CTTGAATCAG	-	p.L1509fs
BRCA	TCGA-AN-A0XU-01	MYO1G	ENST00000488554.1,ENST00000495831.1,ENST00000258787.7,ENST00000483585.1	chr7	45007482:45007557:45009011:45009082:45009303:45009474,	45009012	45009082	45009012	45009012	Frame_Shift_Del	G	-	p.T525fs
BRCA	TCGA-AN-A0XU-01	MYO1G	ENST00000463516.1	chr7	45007482:45007557:45008518:45009082:45009303:45009474,	45008519	45009082	45009012	45009012	Frame_Shift_Del	G	-	p.T525fs
BRCA	TCGA-A2-A0YT-01	MYO5C	ENST00000559696.1,ENST00000261839.7,ENST00000560809.1	chr15	52498012:52498163:52500750:52500840:52503926:52504081,	52500751	52500840	52500831	52500844	Frame_Shift_Del	CTAAATGTTCCTTA	-	p.E1433fs
BRCA	TCGA-D8-A1X5-01	MYO6	ENST00000369977.3,ENST00000369985.4,ENST00000369981.3,ENST00000369975.1	chr6	76550301:76550399:76550930:76551095:76554613:76554694,	76550931	76551095	76551053	76551054	Frame_Shift_Ins	-	TA	p.I258fs
BRCA	TCGA-C8-A12M-01	MYO6	ENST00000369977.3,ENST00000369985.4,ENST00000369981.3,ENST00000369975.1	chr6	76550930:76551095:76554613:76554694:76558067:76558248,	76554614	76554694	76554660	76554663	Frame_Shift_Del	ACAA	-	p.K289fs
BRCA	TCGA-AR-A1AS-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95134519:95134712:95137079:95137186:95139619:95139744,	95137080	95137186	95137179	95137182	Frame_Shift_Del	TTTG	-	p.T669fs
BRCA	TCGA-AN-A0FX-01	MYOF	ENST00000359263.4,ENST00000371489.1,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95168543:95168672:95169329:95169496:95185827:95185915,	95169330	95169496	95169434	95169435	Frame_Shift_Ins	-	C	p.P165fs
BRCA	TCGA-B6-A0RM-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191524294	191524294	Frame_Shift_Del	C	-	p.A131fs
BRCA	TCGA-EW-A1J1-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16024365:16024583:16029395:16029520:16040624:16040726,	16029396	16029520	16029431	16029435	Frame_Shift_Del	TTTCT	-	p.K532fs
BRCA	TCGA-E9-A1NF-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16024365:16024583:16029395:16029520:16040624:16040726,	16029396	16029520	16029456	16029457	Frame_Shift_Ins	-	T	p.T525fs
BRCA	TCGA-E2-A156-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000460276.1,ENST00000436828.1,ENST00000395851.1,ENST00000268712.3	chr17	16062073:16062187:16068292:16068475:16075116:16075309,	16068293	16068475	16068342	16068352	Frame_Shift_Del	CGATCTACACG	-	p.V188fs
BRCA	TCGA-E2-A105-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000460276.1,ENST00000436828.1,ENST00000395851.1,ENST00000268712.3	chr17	16062073:16062187:16068292:16068475:16075116:16075309,	16068293	16068475	16068397	16068397	Frame_Shift_Del	A	-	p.S172fs
BRCA	TCGA-A8-A091-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1,ENST00000458234.1	chr12	124870290:124870433:124882664:124882727:124885046:124885219,	124882665	124882727	124882708	124882709	Frame_Shift_Ins	-	T	p.S612fs
BRCA	TCGA-AR-A24S-01	NDUFA4	ENST00000486007.1	chr7	10977730:10977774:10978434:10978523:10979642:10979705,	10978435	10978523	10978513	10978514	Frame_Shift_Ins	-	G	p.L18fs
BRCA	TCGA-BH-A0GY-01	NEB	ENST00000603639.1,ENST00000424585.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000413693.1,ENST00000397337.2,ENST00000509223.2,ENST00000409198.1,ENST00000172853.10,ENST00000421461.2	chr2	152359862:152359955:152361991:152362084:152362679:152362772,	152361992	152362084	152362016	152362017	Frame_Shift_Del	CT	-	p.K6205fs
BRCA	TCGA-AR-A0TR-01	NELL2	ENST00000547751.1,ENST00000452445.2,ENST00000550313.1,ENST00000333837.4,ENST00000551601.1,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	45059266:45059392:45097508:45097637:45105074:45105177,	45097509	45097637	45097587	45097587	Frame_Shift_Del	T	-	p.R464fs
BRCA	TCGA-E2-A1LS-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527502	29527503	Frame_Shift_Del	AG	-	p.E318fs
BRCA	TCGA-AN-A0AL-01	NF1	ENST00000487476.1,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29490203:29490394:29496908:29497015:29508439:29508507,	29496909	29497015	29496963	29496964	Frame_Shift_Del	AT	-	p.E178fs
BRCA	TCGA-A2-A0YL-01	NF1	ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29663350:29663491:29663652:29663932:29664385:29664600,	29663653	29663932	29663859	29663860	Frame_Shift_Ins	-	C	p.R2118fs
BRCA	TCGA-E2-A15K-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845738	24845738	Frame_Shift_Del	C	-	p.P829fs
BRCA	TCGA-E2-A15K-01	NFATC4	ENST00000554591.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000554966.1,ENST00000554050.1,ENST00000554473.1,ENST00000553469.1	chr14	24845279:24845307:24845499:24845760:24846843:24846911,	24845500	24845760	24845738	24845738	Frame_Shift_Del	C	-	p.P829fs
BRCA	TCGA-E2-A15K-06	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845738	24845738	Frame_Shift_Del	C	-	p.P829fs
BRCA	TCGA-E2-A15K-06	NFATC4	ENST00000554591.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000554966.1,ENST00000554050.1,ENST00000554473.1,ENST00000553469.1	chr14	24845279:24845307:24845499:24845760:24846843:24846911,	24845500	24845760	24845738	24845738	Frame_Shift_Del	C	-	p.P829fs
BRCA	TCGA-A7-A0DA-01	NFKB2	ENST00000189444.6,ENST00000428099.1,ENST00000369966.3	chr10	104159836:104159951:104160034:104160248:104160411:104160581,	104160035	104160248	104160244	104160249	Frame_Shift_Del	TGAGGG	-	p.F598fs
BRCA	TCGA-BH-A0C3-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745442	17745443	Frame_Shift_Del	TA	-	p.S1053fs
BRCA	TCGA-AN-A0FJ-01	NIF3L1	ENST00000416651.1	chr2	201754169:201754375:201756640:201757102:201757968:201758020,201754091:201754114:201756640:201757102:201757968:201758020,	201756641	201757102	201757024	201757028	Frame_Shift_Del	AGAGT	-	p.V121fs
BRCA	TCGA-AN-A0FJ-01	NIF3L1	ENST00000454952.1	chr2	201754091:201754114:201756458:201757102:201757968:201758020,	201756459	201757102	201757024	201757028	Frame_Shift_Del	AGAGT	-	p.V121fs
BRCA	TCGA-AN-A0FJ-01	NIF3L1	ENST00000359683.4	chr2	201754169:201754375:201756691:201757102:201757968:201758020,	201756692	201757102	201757024	201757028	Frame_Shift_Del	AGAGT	-	p.V121fs
BRCA	TCGA-D8-A1XG-01	NIPAL2	ENST00000430223.2,ENST00000520545.1,ENST00000341166.3	chr8	99215335:99215424:99217338:99217474:99224632:99224729,	99217339	99217474	99217462	99217463	Frame_Shift_Del	AC	-	p.V223fs
BRCA	TCGA-D8-A1JN-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	37024686:37024821:37026330:37026429:37027460:37027514,	37026331	37026429	37026381	37026394	Frame_Shift_Del	CAATGACAAAGAAG	-	p.E1924fs
BRCA	TCGA-BH-A0AV-01	NLRC5	ENST00000538778.1	chr16	57089344:57089431:57092883:57092973:57093378:57093444,	57092884	57092973	57092939	57092940	Frame_Shift_Ins	-	TGTA	p.P1296fs
BRCA	TCGA-BH-A0DD-01	NOSTRIN	ENST00000397206.2,ENST00000444448.2,ENST00000458381.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169707788:169707914:169711861:169711970:169713199:169713288,	169711862	169711970	169711935	169711936	Frame_Shift_Del	AG	-	p.D312fs
BRCA	TCGA-B6-A0I8-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000346562.2,ENST00000357798.5,ENST00000548645.1,ENST00000552874.1	chr14	34204446:34204538:34243542:34243736:34247671:34247778,	34243543	34243736	34243697	34243706	Frame_Shift_Del	GAGTAAATAT	-	p.V324fs
BRCA	TCGA-A2-A0T1-01	NPTN	ENST00000563691.1,ENST00000287226.8,ENST00000545878.1	chr15	73884348:73884478:73889362:73889710:73925465:73925562,	73889363	73889710	73889543	73889544	Frame_Shift_Ins	-	A	p.V86fs
BRCA	TCGA-EW-A1P4-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000409571.1,ENST00000301894.2	chr11	64390224:64390550:64393934:64394024:64397873:64398045,	64393935	64394024	64393940	64393953	Frame_Shift_Del	TCGAGCAGCCACTC	-	p.E1277fs
BRCA	TCGA-A2-A25C-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457918	64457919	Frame_Shift_Ins	-	C	p.A270fs
BRCA	TCGA-C8-A274-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457918	64457919	Frame_Shift_Ins	-	C	p.A270fs
BRCA	TCGA-E9-A1NC-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457918	64457919	Frame_Shift_Ins	-	C	p.A270fs
BRCA	TCGA-B6-A0IG-01	NSMCE4A	ENST00000369023.3,ENST00000468209.1,ENST00000489266.1	chr10	123718879:123718925:123719015:123719110:123719872:123719921,	123719016	123719110	123719061	123719062	Frame_Shift_Del	TT	-	p.Q346fs
BRCA	TCGA-E2-A15T-01	NTM	ENST00000498764.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000496094.1,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132177582:132177717:132180005:132180126:132184445:132184493,	132180006	132180126	132180029	132180029	Frame_Shift_Del	A	-	p.K229fs
BRCA	TCGA-A2-A25B-01	NUP54	ENST00000508465.1	chr4	77036590:77036647:77038816:77038895:77039227:77039347,	77038817	77038895	77038880	77038881	Frame_Shift_Del	AA	-	p.F444fs
BRCA	TCGA-A2-A25B-01	NUP54	ENST00000458189.2,ENST00000512151.1,ENST00000507257.1,ENST00000264883.3,ENST00000502850.1,ENST00000514987.1,ENST00000513248.1,ENST00000342467.6	chr4	77036590:77036647:77038816:77038927:77039227:77039347,	77038817	77038927	77038880	77038881	Frame_Shift_Del	AA	-	p.F444fs
BRCA	TCGA-A2-A0T0-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000527104.1,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3746332:3746449:3752620:3752808:3756420:3756554,	3752621	3752808	3752719	3752725	Frame_Shift_Del	CCGGACT	-	p.R542fs
BRCA	TCGA-A1-A0SP-01	NUSAP1	ENST00000560747.1,ENST00000260359.6,ENST00000414849.2,ENST00000560177.1,ENST00000559596.1	chr15	41663724:41663882:41669393:41669502:41672290:41672461,41667909:41668026:41669393:41669502:41672290:41672461,	41669394	41669502	41669445	41669445	Frame_Shift_Del	A	-	p.H392fs
BRCA	TCGA-A8-A094-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228487582:228487846:228491375:228491639:228492003:228492045,	228491376	228491639	228491624	228491625	Frame_Shift_Del	AC	-	p.L1354fs
BRCA	TCGA-AR-A1AH-01	PADI2	ENST00000375486.4,ENST00000375481.1	chr1	17413015:17413194:17418902:17419028:17420061:17420179,	17418903	17419028	17418927	17418928	Frame_Shift_Ins	-	GA	p.K210fs
BRCA	TCGA-AR-A1AH-01	PADI2	ENST00000375486.4,ENST00000375481.1	chr1	17413015:17413194:17418902:17419028:17420061:17420179,	17418903	17419028	17418927	17418930	Frame_Shift_Del	TGTC	-	p.D210fs
BRCA	TCGA-E9-A1NC-01	PAK6	ENST00000260404.4,ENST00000560346.1,ENST00000441369.1,ENST00000542403.2,ENST00000453867.1	chr15	40565751:40565877:40566342:40566477:40568127:40569687,	40566343	40566477	40566446	40566447	Frame_Shift_Ins	-	C	p.P619fs
BRCA	TCGA-A8-A06X-01	PARD3B	ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205990332:205990461:206023445:206023631:206036934:206037105,	206023446	206023631	206023581	206023588	Frame_Shift_Del	GACTTGGG	-	p.L525fs
BRCA	TCGA-C8-A137-01	PAX5	ENST00000523241.1,ENST00000414447.1,ENST00000377853.2,ENST00000523493.1,ENST00000377852.2,ENST00000520281.1,ENST00000520154.1,ENST00000377840.2,ENST00000377847.2	chr9	37014993:37015191:37020632:37020798:37033982:37034028,	37020633	37020798	37020655	37020655	Frame_Shift_Del	A	-	p.C64fs
BRCA	TCGA-EW-A1IZ-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863767	47863768	Frame_Shift_Ins	-	C	p.T3252fs
BRCA	TCGA-A8-A09K-01	PDE9A	ENST00000349112.3,ENST00000495521.1	chr21	44073864:44073993:44119077:44119121:44151879:44152059,44108026:44108104:44119077:44119121:44152179:44152234,44108026:44108104:44119077:44119121:44153465:44153536,44073922:44073993:44119077:44119121:44152179:44152234,44073922:44073993:44119077:44119121:44153465:44153536,	44119078	44119121	44119099	44119099	Frame_Shift_Del	T	-	p.V81fs
BRCA	TCGA-AR-A1AI-01	PDGFB	ENST00000331163.6,ENST00000381551.4	chr22	39621699:39621852:39626088:39626233:39627626:39627832,	39626089	39626233	39626161	39626161	Frame_Shift_Del	C	-	p.A177fs
BRCA	TCGA-A2-A0D4-01	PDS5A	ENST00000303538.8	chr4	39824482:39827108:39839475:39839828:39843567:39843676,	39839476	39839828	39839575	39839600	Frame_Shift_Del	TCCTGACCCACTGCAGCTCTCTTCCT	-	p.R1296fs
BRCA	TCGA-A2-A1G0-01	PDS5B	ENST00000450460.1,ENST00000498550.1,ENST00000315596.10	chr13	33241900:33241981:33247352:33247493:33249980:33250096,	33247353	33247493	33247483	33247487	Frame_Shift_Del	TTAAA	-	p.L281fs
BRCA	TCGA-AN-A0FY-01	PER3	ENST00000361923.2,ENST00000377532.3	chr1	7863110:7863213:7863751:7863908:7868952:7869058,	7863752	7863908	7863784	7863791	Frame_Shift_Del	CATTCTCC	-	p.P339fs
BRCA	TCGA-C8-A12L-01	PGLYRP2	ENST00000340880.4	chr19	15582700:15582911:15586348:15587419:15590121:15590246,	15586349	15587419	15586540	15586540	Frame_Shift_Del	A	-	p.F314fs
BRCA	TCGA-AO-A0J7-01	PGR	ENST00000534780.1,ENST00000526300.1,ENST00000263463.5	chr11	100962490:100962607:100996737:100996889:100998164:100999801,	100996738	100996889	100996740	100996741	Frame_Shift_Ins	-	C	p.E596fs
BRCA	TCGA-A1-A0SO-01	PHF2	ENST00000359246.4	chr9	96422473:96422842:96425188:96425308:96425798:96425917,	96425189	96425308	96425216	96425216	Frame_Shift_Del	A	-	p.N576fs
BRCA	TCGA-AO-A0JM-01	PHLPP2	ENST00000567016.1,ENST00000568954.1,ENST00000356272.3,ENST00000360429.3,ENST00000568004.1	chr16	71692555:71692718:71697801:71698002:71701080:71701236,	71697802	71698002	71697861	71697862	Frame_Shift_Del	CC	-	p.G642fs
BRCA	TCGA-E9-A1R5-01	PIGO	ENST00000465745.2,ENST00000341666.3,ENST00000361778.2	chr9	35094212:35094356:35095051:35095563:35096557:35096573,	35095052	35095563	35095358	35095364	Frame_Shift_Del	GCGAAAA	-	p.F67fs
BRCA	TCGA-E9-A1NC-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.R604fs
BRCA	TCGA-BH-A18T-01	PIP4K2C	ENST00000354947.5,ENST00000551772.1,ENST00000550095.1,ENST00000550360.1,ENST00000540759.2	chr12	57987807:57987905:57988908:57989005:57992847:57992877,57987807:57987905:57988908:57989005:57989670:57989814,	57988909	57989005	57988969	57988969	Frame_Shift_Del	C	-	p.R112fs
BRCA	TCGA-A8-A08F-01	PLA1A	ENST00000273371.4,ENST00000494440.1,ENST00000488919.1,ENST00000495992.1	chr3	119338409:119338499:119343970:119344079:119347547:119347712,	119343971	119344079	119344029	119344041	Frame_Shift_Del	CGAGGTTACCTTC	-	p.E358fs
BRCA	TCGA-A1-A0SH-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96018770:96018907:96022250:96022489:96025403:96025465,	96022251	96022489	96022290	96022323	Frame_Shift_Del	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	-	p.I1285fs
BRCA	TCGA-A2-A04V-01	PLEKHA2	ENST00000388745.4,ENST00000518571.1,ENST00000521784.1,ENST00000521746.1,ENST00000420274.1	chr8	38808367:38808508:38809683:38809830:38810153:38810222,	38809684	38809830	38809720	38809721	Frame_Shift_Ins	-	C	p.H176fs
BRCA	TCGA-E2-A14W-01	PLEKHA8	ENST00000396259.1,ENST00000396257.2,ENST00000449726.1,ENST00000258679.7,ENST00000440706.2	chr7	30090049:30090090:30092324:30092482:30094324:30094481,	30092325	30092482	30092481	30092493	Frame_Shift_Del	AGGTAAAAACAAA	-	p.V266fs
BRCA	TCGA-EW-A1PA-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151151728	151151731	Frame_Shift_Del	AGGA	-	p.E495fs
BRCA	TCGA-A8-A06Z-01	PLEKHH1	ENST00000329153.5	chr14	68028670:68028752:68028853:68029611:68035854:68035933,	68028854	68029611	68029176	68029176	Frame_Shift_Del	A	-	p.R276fs
BRCA	TCGA-EW-A1J2-01	POLG	ENST00000268124.5,ENST00000442287.2,ENST00000526398.1	chr15	89865192:89865246:89866634:89866742:89867045:89867132,89866035:89866133:89866634:89866742:89867045:89867132,	89866635	89866742	89866675	89866676	Frame_Shift_Ins	-	T	p.V742fs
BRCA	TCGA-B6-A0IB-01	POLR3F	ENST00000377603.4,ENST00000462997.1	chr20	18461045:18461153:18462262:18462454:18464124:18464207,	18462263	18462454	18462391	18462391	Frame_Shift_Del	C	-	p.Y270fs
BRCA	TCGA-D8-A1XJ-01	PPHLN1	ENST00000395568.2,ENST00000549190.1,ENST00000395580.3,ENST00000552761.1,ENST00000337898.6,ENST00000358314.7,ENST00000432191.2,ENST00000552202.1	chr12	42768757:42768876:42778741:42778798:42781257:42781324,	42778742	42778798	42778795	42778796	Frame_Shift_Del	AG	-	p.D190fs
BRCA	TCGA-B6-A0RH-01	PPP1R14A	ENST00000591585.1,ENST00000301242.4	chr19	38742945:38742978:38743533:38743614:38746778:38747012,	38743534	38743614	38743550	38743554	Frame_Shift_Del	CTCTC	-	p.E88fs
BRCA	TCGA-BH-A0HP-01	PREX1	ENST00000482556.1,ENST00000396220.1,ENST00000371941.3	chr20	47266533:47266744:47267431:47267593:47267933:47268121,	47267432	47267593	47267491	47267491	Frame_Shift_Del	G	-	p.R920fs
BRCA	TCGA-E9-A1RI-01	PRODH	ENST00000334029.2,ENST00000438924.1,ENST00000429300.1,ENST00000357068.6,ENST00000420436.1	chr22	18908893:18908936:18909837:18909917:18910329:18910440,	18909838	18909917	18909913	18909914	Frame_Shift_Ins	-	T	p.S285fs
BRCA	TCGA-BH-A1FC-01	PROM1	ENST00000447510.2,ENST00000508167.1,ENST00000510224.1,ENST00000505450.1	chr4	15972665:15972705:15981017:15981086:15981503:15981527,	15981018	15981086	15981063	15981064	Frame_Shift_Ins	-	A	p.Y846fs
BRCA	TCGA-AO-A0J5-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000487363.1,ENST00000397519.2	chr9	15486824:15486929:15489983:15490122:15506558:15506635,	15489984	15490122	15490113	15490114	Frame_Shift_Ins	-	A	p.L53fs
BRCA	TCGA-A7-A26F-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690810	89690811	Frame_Shift_Del	GA	-	p.E73fs
BRCA	TCGA-E2-A1IH-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690810	89690813	Frame_Shift_Del	GAAA	-	p.E73fs
BRCA	TCGA-AC-A23C-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711928	89711929	Frame_Shift_Del	AA	-	p.K183fs
BRCA	TCGA-E2-A14Z-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717727	89717737	Frame_Shift_Del	GTGATATCAAA	-	p.D252fs
BRCA	TCGA-D8-A13Z-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717742	89717743	Frame_Shift_Ins	-	G	p.F257fs
BRCA	TCGA-A2-A0YH-01	PYGB	ENST00000216962.4	chr20	25255227:25255359:25257281:25257393:25257879:25257962,	25257282	25257393	25257355	25257355	Frame_Shift_Del	G	-	p.W245fs
BRCA	TCGA-A2-A0T2-01	QPCT	ENST00000338415.3	chr2	37571870:37571994:37586722:37587001:37594374:37594551,37579931:37580078:37586722:37587001:37594374:37594551,	37586723	37587001	37586965	37586966	Frame_Shift_Ins	-	G	p.A170fs
BRCA	TCGA-BH-A0DD-01	RAB2A	ENST00000396696.1,ENST00000466595.1,ENST00000530071.1,ENST00000531289.1,ENST00000262646.7	chr8	61504416:61504528:61531138:61531207:61533232:61533454,	61531139	61531207	61531179	61531179	Frame_Shift_Del	A	-	p.E173fs
BRCA	TCGA-E2-A1B5-01	RAB6A	ENST00000336083.3,ENST00000400470.2	chr11	73427295:73427407:73429657:73429763:73431890:73431944,	73429658	73429763	73429669	73429670	Frame_Shift_Ins	-	A	p.Y93fs
BRCA	TCGA-A7-A13G-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5264502:5264970:5266206:5266311:5268416:5268533,	5266207	5266311	5266266	5266267	Frame_Shift_Del	AC	-	p.Q542fs
BRCA	TCGA-A8-A07P-01	RAD21	ENST00000523547.1,ENST00000519837.1,ENST00000522699.1,ENST00000297338.2,ENST00000517485.1,ENST00000520992.1	chr8	117874092:117874179:117875368:117875498:117878824:117879000,	117875369	117875498	117875465	117875466	Frame_Shift_Del	AG	-	p.L60fs
BRCA	TCGA-A2-A1FV-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697099	17697100	Frame_Shift_Del	GC	-	p.Q280fs
BRCA	TCGA-C8-A27B-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697099	17697100	Frame_Shift_Del	GC	-	p.Q280fs
BRCA	TCGA-D8-A1XR-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697099	17697100	Frame_Shift_Del	GC	-	p.Q280fs
BRCA	TCGA-D8-A140-01	RAN	ENST00000541630.1,ENST00000543796.1,ENST00000477395.1,ENST00000392369.2,ENST00000448750.3,ENST00000535090.1,ENST00000254675.3	chr12	131357547:131357673:131359090:131359278:131360156:131360184,	131359091	131359278	131359172	131359172	Frame_Shift_Del	G	-	p.R110fs
BRCA	TCGA-D8-A140-01	RAN	ENST00000536606.1	chr12	131357547:131357673:131359095:131359278:131360156:131360184,	131359096	131359278	131359172	131359172	Frame_Shift_Del	G	-	p.R110fs
BRCA	TCGA-BH-A0BW-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881488	48881489	Frame_Shift_Ins	-	AG	p.A73fs
BRCA	TCGA-BH-A0C7-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48936989	48936989	Frame_Shift_Del	C	-	p.R254fs
BRCA	TCGA-A8-A09M-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40440303	40440304	Frame_Shift_Del	CT	-	p.S203fs
BRCA	TCGA-A2-A0T2-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40440780	40440781	Frame_Shift_Ins	-	A	p.Y44fs
BRCA	TCGA-A1-A0SP-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-A2-A1G0-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-AR-A251-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-D8-A1JD-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-D8-A1JF-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-D8-A1JH-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-D8-A1XT-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-D8-A27I-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-E2-A1LG-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-E2-A1LK-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-E9-A1NI-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-E9-A24A-01	RBMX	ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135958758:135958814:135960073:135960245:135961175:135961282,	135960074	135960245	135960146	135960147	Frame_Shift_Ins	-	AA	p.P105fs
BRCA	TCGA-BH-A1FR-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961585	135961586	Frame_Shift_Ins	-	T	p.M1fs
BRCA	TCGA-BH-A0HP-01	RENBP	ENST00000442361.1,ENST00000412763.1	chrX	153205554:153205686:153206930:153207106:153208306:153208486,	153206931	153207106	153206997	153206997	Frame_Shift_Del	G	-	p.G294fs
BRCA	TCGA-A8-A09D-01	RFC4	ENST00000433496.1	chr3	186507688:186507853:186507930:186508044:186508114:186508195,186507688:186507853:186507930:186508044:186509513:186509639,	186507931	186508044	186507944	186507944	Frame_Shift_Del	G	-	p.T328fs
BRCA	TCGA-B6-A0IH-01	RFX3	ENST00000358730.2,ENST00000382004.3,ENST00000449190.1,ENST00000302303.1,ENST00000457373.1,ENST00000451859.1	chr9	3330316:3330517:3346666:3346764:3395471:3395588,	3346667	3346764	3346744	3346745	Frame_Shift_Del	CA	-	p.V46fs
BRCA	TCGA-BH-A0BR-01	RNF14	ENST00000394514.2,ENST00000394520.2,ENST00000394519.1,ENST00000356143.1,ENST00000394515.3,ENST00000347642.3	chr5	141359687:141359916:141362944:141363117:141364367:141364498,	141362945	141363117	141362978	141362978	Frame_Shift_Del	A	-	p.A367fs
BRCA	TCGA-D8-A1JL-01	RPL8	ENST00000529163.1	chr8	146015739:146015855:146016661:146016880:146017157:146017257,146015739:146015855:146016661:146016880:146017750:146017775,	146016662	146016880	146016828	146016829	Frame_Shift_Ins	-	GG	p.I112fs
BRCA	TCGA-E9-A22E-01	RTN3	ENST00000339997.4,ENST00000540798.1,ENST00000356000.3,ENST00000377819.5,ENST00000537981.1	chr11	63517462:63517670:63523583:63523642:63525627:63525893,63521152:63521180:63523583:63523642:63525627:63525893,	63523584	63523642	63523641	63523644	Frame_Shift_Del	AAGT	-	p.K999fs
BRCA	TCGA-E2-A15P-01	RTN4	ENST00000317610.7,ENST00000402434.2	chr2	55209650:55209789:55214626:55214834:55276880:55277350,	55214627	55214834	55214698	55214699	Frame_Shift_Del	CA	-	p.V1050fs
BRCA	TCGA-BH-A1EO-01	RUFY1	ENST00000377001.2,ENST00000502984.1,ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1,ENST00000393448.2	chr5	178989631:178989665:178994461:178994563:178996302:178996383,	178994462	178994563	178994480	178994481	Frame_Shift_Ins	-	CGAG	p.W209fs
BRCA	TCGA-AR-A24R-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171623	36171624	Frame_Shift_Del	AG	-	p.S314fs
BRCA	TCGA-AR-A24U-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171674	36171680	Frame_Shift_Del	GTGCACA	-	p.V296fs
BRCA	TCGA-E9-A1R5-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171700	36171715	Frame_Shift_Del	CCAGGTATTGGTAGGA	-	p.S284fs
BRCA	TCGA-BH-A202-01	RUNX1	ENST00000358356.5	chr21	36171597:36171759:36206706:36206898:36231770:36231875,36193575:36193993:36206706:36206898:36231770:36231875,	36206707	36206898	36206776	36206777	Frame_Shift_Ins	-	G	p.T245fs
BRCA	TCGA-C8-A274-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252880	36252881	Frame_Shift_Ins	-	G	p.L161fs
BRCA	TCGA-A7-A26E-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252994	36252995	Frame_Shift_Ins	-	C	p.D123fs
BRCA	TCGA-C8-A274-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252994	36252995	Frame_Shift_Ins	-	C	p.D123fs
BRCA	TCGA-BH-A0BM-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171704	36171705	Frame_Shift_Ins	-	TA	p.L288fs
BRCA	TCGA-E2-A154-01	RUNX1	ENST00000358356.5	chr21	36171597:36171759:36206706:36206898:36231770:36231875,36193575:36193993:36206706:36206898:36231770:36231875,	36206707	36206898	36206729	36206736	Frame_Shift_Del	AGGGTTAA	-	p.F259fs
BRCA	TCGA-AO-A03O-01	RUNX1	ENST00000358356.5	chr21	36171597:36171759:36206706:36206898:36231770:36231875,36193575:36193993:36206706:36206898:36231770:36231875,	36206707	36206898	36206845	36206861	Frame_Shift_Del	CGGAAAAGGACAAGCTC	-	p.S218fs
BRCA	TCGA-A8-A08Z-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252856	36252857	Frame_Shift_Ins	-	T	p.R169fs
BRCA	TCGA-BH-A0HP-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252856	36252857	Frame_Shift_Ins	-	T	p.R169fs
BRCA	TCGA-BH-A1EV-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252990	36252990	Frame_Shift_Del	A	-	p.P125fs
BRCA	TCGA-AR-A1AT-01	RUNX1	ENST00000455571.1	chr21	36252902:36253010:36259139:36259393:36265221:36265260,36252902:36253010:36259139:36259393:36421138:36421255,	36259140	36259393	36259157	36259157	Frame_Shift_Del	G	-	p.L112fs
BRCA	TCGA-BH-A0BA-01	SAAL1	ENST00000524803.1	chr11	18102957:18103050:18105081:18105278:18108412:18108507,	18105082	18105278	18105265	18105281	Frame_Shift_Del	TAGAGGAAGATCTACTG	-	p.V348fs
BRCA	TCGA-BH-A0BA-01	SAAL1	ENST00000300013.4	chr11	18102957:18103050:18105081:18105275:18108412:18108507,	18105082	18105275	18105265	18105281	Frame_Shift_Del	TAGAGGAAGATCTACTG	-	p.V348fs
BRCA	TCGA-A2-A1FZ-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141168	167141171	Frame_Shift_Del	ACAA	-	p.F589fs
BRCA	TCGA-A2-A1FZ-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141168	167141171	Frame_Shift_Del	ACAA	-	p.F589fs
BRCA	TCGA-AO-A0J5-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144891156	144891156	Frame_Shift_Del	C	-	p.D580fs
BRCA	TCGA-E2-A109-01	SDR39U1	ENST00000555365.1	chr14	24910059:24910132:24910879:24911001:24911303:24911383,24910059:24910132:24910879:24911001:24911383:24911466,24910059:24910132:24910879:24911001:24911551:24911581,	24910880	24911001	24910883	24910883	Frame_Shift_Del	C	-	p.V109fs
BRCA	TCGA-AN-A0AJ-01	SEC24A	ENST00000398844.2	chr5	134039448:134039622:134041016:134041127:134044402:134044578,	134041017	134041127	134041046	134041046	Frame_Shift_Del	T	-	p.C824fs
BRCA	TCGA-BH-A18F-01	SEC31A	ENST00000443462.2,ENST00000505984.1,ENST00000508502.1,ENST00000264405.5	chr4	83750152:83750211:83763337:83763634:83765538:83765613,	83763338	83763634	83763540	83763541	Frame_Shift_Ins	-	T	p.Y907fs
BRCA	TCGA-BH-A18F-01	SEC31A	ENST00000432794.1	chr4	83750152:83750211:83763292:83763634:83765538:83765613,83752089:83752128:83763292:83763634:83765538:83765613,	83763293	83763634	83763540	83763541	Frame_Shift_Ins	-	T	p.Y907fs
BRCA	TCGA-AR-A1AT-01	SERPINA1	ENST00000489769.1	chr14	94845800:94845948:94846987:94847478:94848928:94849578,	94846988	94847478	94847276	94847276	Frame_Shift_Del	T	-	p.K283fs
BRCA	TCGA-AR-A1AT-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000355814.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4,ENST00000440909.1	chr14	94845800:94845948:94847207:94847478:94848928:94849578,	94847208	94847478	94847276	94847276	Frame_Shift_Del	T	-	p.K283fs
BRCA	TCGA-AN-A0FV-01	SERPINC1	ENST00000367698.3	chr1	173879891:173880029:173880936:173881152:173883690:173883803,	173880937	173881152	173881074	173881075	Frame_Shift_Del	AG	-	p.Y163fs
BRCA	TCGA-D8-A1X8-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098494	47098495	Frame_Shift_Ins	-	T	p.A2261fs
BRCA	TCGA-D8-A1X8-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098494	47098498	Frame_Shift_Del	CGGCA	-	p.V2259fs
BRCA	TCGA-D8-A1X8-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098502	47098509	Frame_Shift_Del	GCAAGACA	-	p.V2256fs
BRCA	TCGA-BH-A1F8-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150923840:150923957:150931653:150931823:150933038:150933366,	150931654	150931823	150931666	150931667	Frame_Shift_Ins	-	A	p.N781fs
BRCA	TCGA-A2-A0D1-01	SEZ6L	ENST00000494013.1	chr22	26747017:26747209:26771543:26771655:26773638:26773686,26761337:26761532:26771543:26771655:26773638:26773686,	26771544	26771655	26771550	26771557	Frame_Shift_Del	CGGCAGCA	-	p.A946fs
BRCA	TCGA-A2-A0D1-01	SEZ6L	ENST00000529632.2,ENST00000360929.3	chr22	26747017:26747209:26771540:26771655:26773638:26773686,26761337:26761532:26771540:26771655:26773638:26773686,	26771541	26771655	26771550	26771557	Frame_Shift_Del	CGGCAGCA	-	p.A946fs
BRCA	TCGA-AN-A0FL-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235949579	235949580	Frame_Shift_Ins	-	ATGCAAAGGAAGTG	p.E60fs
BRCA	TCGA-E9-A22G-01	SLAMF7	ENST00000368043.3,ENST00000359331.4,ENST00000495334.1	chr1	160709093:160709146:160717983:160718304:160721975:160722036,160709093:160709146:160717983:160718304:160719610:160719883,	160717984	160718304	160718165	160718169	Frame_Shift_Del	GAGAG	-	p.E79fs
BRCA	TCGA-A8-A08H-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000338335.3,ENST00000316341.3,ENST00000575857.2,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67979447:67979456:67979666:67979774:67979853:67979985,	67979667	67979774	67979728	67979729	Frame_Shift_Ins	-	CG	p.M929fs
BRCA	TCGA-B6-A0X5-01	SLC13A5	ENST00000293800.6,ENST00000381074.4,ENST00000433363.2	chr17	6589415:6589657:6590847:6590985:6594097:6594203,	6590848	6590985	6590917	6590918	Frame_Shift_Ins	-	A	p.M503fs
BRCA	TCGA-E9-A247-01	SLC29A3	ENST00000373189.5	chr10	73103965:73104048:73111318:73111545:73115837:73116000,	73111319	73111545	73111493	73111496	Frame_Shift_Del	CTAC	-	p.I186fs
BRCA	TCGA-BH-A1FM-01	SLC2A9	ENST00000309065.3,ENST00000503803.1,ENST00000506583.1,ENST00000512342.1,ENST00000264784.3	chr4	9828043:9828224:9836504:9836632:9889190:9889266,	9836505	9836632	9836533	9836546	Frame_Shift_Del	GCAAAGTTGGAGAG	-	p.L460fs
BRCA	TCGA-AR-A24H-01	SLC30A8	ENST00000456015.2,ENST00000427715.2,ENST00000521243.1,ENST00000519688.1	chr8	118175667:118175769:118183272:118183407:118184774:118184974,	118183273	118183407	118183309	118183318	Frame_Shift_Del	AGCTTATTTT	-	p.L290fs
BRCA	TCGA-A8-A07R-01	SLC35A2	ENST00000376512.1,ENST00000445167.2,ENST00000376529.3,ENST00000376521.1	chrX	48763708:48763820:48767090:48767273:48768822:48768923,	48767091	48767273	48767129	48767129	Frame_Shift_Del	C	-	p.G79fs
BRCA	TCGA-E2-A15A-06	SLC37A1	ENST00000352133.2,ENST00000398341.3	chr21	43983924:43983987:43984817:43984903:43985936:43985985,	43984818	43984903	43984830	43984831	Frame_Shift_Ins	-	AG	p.G384fs
BRCA	TCGA-AR-A0TV-01	SLC4A5	ENST00000357822.5,ENST00000377634.4	chr2	74454083:74454257:74454643:74454691:74454936:74455005,	74454644	74454691	74454651	74454651	Frame_Shift_Del	A	-	p.L986fs
BRCA	TCGA-B6-A0RL-01	SLC6A18	ENST00000296821.4,ENST00000324642.3	chr5	1232865:1233003:1235595:1235777:1238064:1238175,	1235596	1235777	1235615	1235615	Frame_Shift_Del	G	-	p.G154fs
BRCA	TCGA-BH-A0HW-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	474997:475247:475675:475786:476134:476207,	475676	475786	475689	475689	Frame_Shift_Del	G	-	p.D747fs
BRCA	TCGA-BH-A0HA-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182525	59182526	Frame_Shift_Del	TC	-	p.R678fs
BRCA	TCGA-AC-A23E-01	SMAD5	ENST00000545620.1	chr5	135468592:135468651:135489280:135489852:135496544:135496796,	135489281	135489852	135489806	135489807	Frame_Shift_Del	AG	-	p.E120fs
BRCA	TCGA-A1-A0SM-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128605180:128605303:128614677:128614791:128615051:128615162,	128614678	128614791	128614761	128614761	Frame_Shift_Del	G	-	p.Q787fs
BRCA	TCGA-A7-A0DA-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45749857:45750012:45750838:45750995:45754576:45754675,	45750839	45750995	45750849	45750862	Frame_Shift_Del	CTCTTGAAACTTGT	-	p.D1032fs
BRCA	TCGA-E2-A1LB-01	SMC4	ENST00000344722.5,ENST00000357388.3,ENST00000462668.1,ENST00000469762.1	chr3	160148386:160148531:160148819:160148993:160149430:160149613,	160148820	160148993	160148940	160148941	Frame_Shift_Del	AT	-	p.I1021fs
BRCA	TCGA-A8-A09V-01	SNAP23	ENST00000566035.1,ENST00000563830.1,ENST00000249647.3,ENST00000568841.1,ENST00000568514.1,ENST00000563765.1,ENST00000566327.1	chr15	42807434:42807552:42820459:42820618:42821872:42822002,	42820460	42820618	42820532	42820533	Frame_Shift_Del	TG	-	p.V114fs
BRCA	TCGA-EW-A1OY-01	SNRK	ENST00000429705.2	chr3	43328077:43328167:43344589:43345284:43373660:43373802,	43344590	43345284	43344860	43344864	Frame_Shift_Del	AGCTA	-	p.A56fs
BRCA	TCGA-AO-A0JB-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34924699	34924699	Frame_Shift_Del	T	-	p.E1055fs
BRCA	TCGA-A8-A09E-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186544746	186544747	Frame_Shift_Ins	-	T	p.D608fs
BRCA	TCGA-D8-A1JL-01	SORBS2	ENST00000437304.2	chr4	186583388:186583396:186598150:186598792:186599576:186599632,	186598151	186598792	186598448	186598476	Frame_Shift_Del	GGTAGAAATCCTCCGAGTTTGAGAATCTT	-	p.Q56fs
BRCA	TCGA-A8-A09C-01	SORBS3	ENST00000240123.7,ENST00000517500.1	chr8	22409439:22409535:22411964:22412121:22412375:22412493,	22411965	22412121	22412098	22412098	Frame_Shift_Del	G	-	p.S28fs
BRCA	TCGA-A8-A0A1-01	SOX10	ENST00000396884.2,ENST00000360880.2	chr22	38370050:38370205:38373873:38374142:38379363:38379421,	38373874	38374142	38373898	38373899	Frame_Shift_Ins	-	A	p.D224fs
BRCA	TCGA-E2-A105-01	SP3	ENST00000418194.2,ENST00000416195.1,ENST00000455789.2,ENST00000310015.6	chr2	174773259:174774985:174777797:174777994:174783320:174783513,	174777798	174777994	174777994	174777999	Frame_Shift_Del	TCTAAA	-	p.G612fs
BRCA	TCGA-E2-A15P-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174819671	174819674	Frame_Shift_Del	TGTT	-	p.T523fs
BRCA	TCGA-BH-A204-01	SPEN	ENST00000438066.1	chr1	16199310:16199631:16202696:16203173:16235815:16235976,16199996:16200890:16202696:16203173:16235815:16235976,	16202697	16203173	16202935	16202936	Frame_Shift_Ins	-	TA	p.H216fs
BRCA	TCGA-E2-A105-01	SPEN	ENST00000438066.1	chr1	16199310:16199631:16202696:16203173:16235815:16235976,16199996:16200890:16202696:16203173:16235815:16235976,	16202697	16203173	16202800	16202801	Frame_Shift_Ins	-	ATAGAGATCCTCGA	p.P174fs
BRCA	TCGA-AN-A03X-01	SQSTM1	ENST00000389805.4,ENST00000510187.1,ENST00000402874.3,ENST00000464493.1,ENST00000508284.1,ENST00000514093.1,ENST00000422245.1,ENST00000376929.3,ENST00000360718.5	chr5	179250025:179250053:179250857:179251087:179251181:179251237,	179250858	179251087	179250877	179250884	Frame_Shift_Del	GGACCACC	-	p.D108fs
BRCA	TCGA-A8-A09K-01	SRA1	ENST00000523259.1	chr5	139930425:139930496:139930645:139931769:139936731:139936857,	139930646	139931769	139931628	139931629	Frame_Shift_Ins	-	GT	p.V110fs
BRCA	TCGA-A8-A09K-01	SRA1	ENST00000602775.1,ENST00000520427.1,ENST00000336283.6	chr5	139930645:139930754:139931566:139931769:139936731:139936857,	139931567	139931769	139931628	139931629	Frame_Shift_Ins	-	GT	p.V110fs
BRCA	TCGA-A2-A0YM-01	SRBD1	ENST00000493649.1,ENST00000535761.1,ENST00000263736.4	chr2	45773870:45773978:45774660:45774751:45778263:45778421,	45774661	45774751	45774701	45774701	Frame_Shift_Del	G	-	p.R576fs
BRCA	TCGA-A8-A09K-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.P1878fs
BRCA	TCGA-BH-A0BZ-01	ST8SIA6	ENST00000377602.4	chr10	17401512:17401599:17432529:17432619:17495557:17495656,	17432530	17432619	17432557	17432563	Frame_Shift_Del	ATGCCAT	-	p.Y86fs
BRCA	TCGA-BH-A0DS-01	STAU2	ENST00000521727.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521447.1	chr8	74529526:74529686:74585341:74585477:74600888:74601048,	74585342	74585477	74585370	74585370	Frame_Shift_Del	A	-	p.Y96fs
BRCA	TCGA-A2-A0EY-01	STRN	ENST00000379213.2,ENST00000263918.4	chr2	37075471:37076768:37076856:37076943:37078142:37078250,	37076857	37076943	37076895	37076895	Frame_Shift_Del	A	-	p.L712fs
BRCA	TCGA-A2-A1FZ-01	SULT1C3	ENST00000376700.1	chr2	108875189:108875284:108875421:108875602:108877023:108877136,	108875422	108875602	108875465	108875486	Frame_Shift_Del	AAACTTGGTCAGGTGATGTTAT	-	p.W224fs
BRCA	TCGA-E9-A1R5-01	SULT1C3	ENST00000376700.1	chr2	108875189:108875284:108875421:108875602:108877023:108877136,	108875422	108875602	108875465	108875486	Frame_Shift_Del	AAACTTGGTCAGGTGATGTTAT	-	p.W224fs
BRCA	TCGA-E2-A1LS-01	SUPT7L	ENST00000405491.1	chr2	27880301:27880536:27883850:27884468:27885045:27885148,	27883851	27884468	27883995	27883996	Frame_Shift_Del	TC	-	p.E92fs
BRCA	TCGA-E2-A1LS-01	SUPT7L	ENST00000337768.5	chr2	27880301:27880536:27883850:27884255:27885045:27885148,	27883851	27884255	27883995	27883996	Frame_Shift_Del	TC	-	p.E92fs
BRCA	TCGA-E2-A15P-01	SUZ12	ENST00000322652.5	chr17	30267304:30267351:30267440:30267505:30274635:30274704,	30267441	30267505	30267462	30267465	Frame_Shift_Del	CTTA	-	p.Y117fs
BRCA	TCGA-D8-A27N-01	SYNE2	ENST00000357395.3,ENST00000555022.1,ENST00000358025.3,ENST00000553289.1,ENST00000554805.1,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64685925:64686128:64687154:64687355:64688293:64688422,	64687155	64687355	64687206	64687212	Frame_Shift_Del	GTGAGCA	-	p.V6638fs
BRCA	TCGA-AR-A24S-01	SYTL1	ENST00000483926.1,ENST00000543823.1,ENST00000490170.1,ENST00000318074.5	chr1	27677946:27678046:27679773:27679979:27680203:27680421,	27679774	27679979	27679789	27679807	Frame_Shift_Del	TGACAGCCAGGCCAGCCGC	-	p.D442fs
BRCA	TCGA-A8-A07G-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149699358	149699359	Frame_Shift_Ins	-	T	p.T104fs
BRCA	TCGA-E9-A22H-01	TAT	ENST00000355962.4	chr16	71602613:71602712:71603756:71603840:71604171:71604300,	71603757	71603840	71603760	71603761	Frame_Shift_Ins	-	AGGT	p.M375fs
BRCA	TCGA-AN-A0FS-01	TBC1D10C	ENST00000312390.5,ENST00000542590.1	chr11	67174097:67174163:67174297:67174487:67176449:67176604,	67174298	67174487	67174406	67174406	Frame_Shift_Del	C	-	p.E254fs
BRCA	TCGA-E2-A14T-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2,ENST00000425511.1	chr13	75930282:75930387:75933904:75933994:75936161:75936743,	75933905	75933994	75933979	75933980	Frame_Shift_Del	TC	-	p.E365fs
BRCA	TCGA-BH-A1FL-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769295	176769296	Frame_Shift_Ins	-	TA	p.A141fs
BRCA	TCGA-BH-A18P-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769295	176769296	Frame_Shift_Ins	-	TA	p.A141fs
BRCA	TCGA-BH-A18R-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769295	176769296	Frame_Shift_Ins	-	TA	p.A141fs
BRCA	TCGA-A8-A096-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769296	176769297	Frame_Shift_Del	TA	-	p.I141fs
BRCA	TCGA-A8-A096-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769299	176769300	Frame_Shift_Ins	-	TG	p.A142fs
BRCA	TCGA-B6-A0RI-01	TBX3	ENST00000349155.2	chr12	115115396:115115461:115117309:115117456:115118683:115118951,	115117310	115117456	115117430	115117431	Frame_Shift_Ins	-	T	p.Y248fs
BRCA	TCGA-EW-A1IZ-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Del	GA	-	p.E892fs
BRCA	TCGA-BH-A0B1-01	TFPI2	ENST00000451238.1	chr7	93516572:93516743:93518346:93518535:93519448:93519482,93516572:93516667:93518346:93518535:93519448:93519482,	93518347	93518535	93518420	93518420	Frame_Shift_Del	C	-	p.C130fs
BRCA	TCGA-A8-A06T-01	TJP1	ENST00000545208.2,ENST00000400011.2	chr15	30011096:30011342:30012561:30012912:30018582:30018683,	30012562	30012912	30012801	30012802	Frame_Shift_Ins	-	AA	p.D841fs
BRCA	TCGA-A8-A07E-01	TLN1	ENST00000486788.2,ENST00000314888.9	chr9	35705746:35705848:35705958:35706108:35706192:35706354,	35705959	35706108	35706019	35706019	Frame_Shift_Del	T	-	p.A1818fs
BRCA	TCGA-A2-A04W-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1	chr16	19498538:19498648:19501716:19501890:19503471:19503550,	19501717	19501890	19501758	19501759	Frame_Shift_Del	CT	-	p.F874fs
BRCA	TCGA-AN-A0FW-01	TMEM82	ENST00000375782.1	chr1	16070654:16071075:16073361:16073549:16074040:16074477,	16073362	16073549	16073524	16073525	Frame_Shift_Ins	-	GA	p.L308fs
BRCA	TCGA-D8-A1Y1-01	TMIGD1	ENST00000328886.4	chr17	28644210:28644251:28645827:28645931:28651833:28652112,	28645828	28645931	28645921	28645922	Frame_Shift_Del	CA	-	p.V217fs
BRCA	TCGA-BH-A208-01	TNFRSF9	ENST00000377507.3	chr1	7979906:7980983:7993221:7993356:7995072:7995160,	7993222	7993356	7993230	7993231	Frame_Shift_Ins	-	ATAT	p.F224fs
BRCA	TCGA-B6-A0IQ-01	TNIP2	ENST00000510267.1,ENST00000505186.1,ENST00000315423.7	chr4	2746113:2746233:2746423:2746672:2747172:2747262,	2746424	2746672	2746573	2746574	Frame_Shift_Ins	-	GT	p.E252fs
BRCA	TCGA-EW-A1P4-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000461127.1,ENST00000584582.1,ENST00000580095.1,ENST00000582981.1	chr17	18205999:18206037:18208425:18208534:18210204:18210280,	18208426	18208534	18208428	18208465	Frame_Shift_Del	GCCTTACACACGTGGATAATCTCAAACCCGATGTTTTC	-	p.E154fs
BRCA	TCGA-EW-A1PH-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577061	7577064	Frame_Shift_Del	CTTT	-	p.K292fs
BRCA	TCGA-E9-A22G-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577127	7577128	Frame_Shift_Ins	-	A	p.E270fs
BRCA	TCGA-E2-A1IO-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578278	7578279	Frame_Shift_Ins	-	A	p.P190fs
BRCA	TCGA-AR-A256-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579359	7579360	Frame_Shift_Ins	-	GA	p.R109fs
BRCA	TCGA-AR-A24K-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579360	7579361	Frame_Shift_Ins	-	AA	p.R110fs
BRCA	TCGA-D8-A27H-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579360	7579364	Frame_Shift_Del	GAAAC	-	p.G108fs
BRCA	TCGA-E2-A1LK-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579432	7579433	Frame_Shift_Ins	-	G	p.A86fs
BRCA	TCGA-AR-A1AQ-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Frame_Shift_Del	G	-	p.R342fs
BRCA	TCGA-A2-A0YM-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574030	7574030	Frame_Shift_Del	G	-	p.R333fs
BRCA	TCGA-A8-A07U-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576863	7576863	Frame_Shift_Del	A	-	p.F328fs
BRCA	TCGA-A2-A0D2-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576885	7576895	Frame_Shift_Del	TCTTCTTTGGC	-	p.P318fs
BRCA	TCGA-C8-A138-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576924	7576925	Frame_Shift_Del	GT	-	p.L308fs
BRCA	TCGA-B6-A0RE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577031	7577031	Frame_Shift_Del	T	-	p.S303fs
BRCA	TCGA-A2-A0T3-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577051	7577079	Frame_Shift_Del	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	-	p.E287fs
BRCA	TCGA-BH-A18U-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577067	7577085	Frame_Shift_Del	TGCGGAGATTCTCTTCCTC	-	p.E285fs
BRCA	TCGA-AN-A0XU-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577107	7577116	Frame_Shift_Del	ACAGGCACAA	-	p.C275fs
BRCA	TCGA-AO-A0J6-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578218	7578218	Frame_Shift_Del	T	-	p.T211fs
BRCA	TCGA-A8-A06U-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.R209fs
BRCA	TCGA-A8-A094-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.R209fs
BRCA	TCGA-A2-A0CM-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578239	7578239	Frame_Shift_Del	C	-	p.E204fs
BRCA	TCGA-BH-A0BG-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578246	7578247	Frame_Shift_Ins	-	A	p.L201fs
BRCA	TCGA-AR-A1AY-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579321	7579322	Frame_Shift_Del	CA	-	p.V122fs
BRCA	TCGA-AR-A1AN-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579359	7579359	Frame_Shift_Del	G	-	p.R110fs
BRCA	TCGA-BH-A0C0-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579359	7579359	Frame_Shift_Del	G	-	p.R110fs
BRCA	TCGA-A2-A04P-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579364	7579364	Frame_Shift_Del	C	-	p.G108fs
BRCA	TCGA-A2-A04U-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579364	7579364	Frame_Shift_Del	C	-	p.G108fs
BRCA	TCGA-AN-A0AJ-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579364	7579364	Frame_Shift_Del	C	-	p.G108fs
BRCA	TCGA-AR-A1AH-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579364	7579365	Frame_Shift_Del	CC	-	p.G108fs
BRCA	TCGA-BH-A18Q-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579458	7579459	Frame_Shift_Ins	-	TGCA	p.P76fs
BRCA	TCGA-BH-A0B1-01	TPM1	ENST00000559556.1,ENST00000403994.3,ENST00000560970.1,ENST00000558347.1,ENST00000358278.3	chr15	63335974:63336030:63336225:63336351:63349183:63349209,63335086:63335142:63336225:63336351:63349183:63349209,	63336226	63336351	63336291	63336291	Frame_Shift_Del	C	-	p.S61fs
BRCA	TCGA-BH-A0B1-01	TPM1	ENST00000558314.1	chr15	63335086:63335142:63335904:63336351:63349183:63349209,	63335905	63336351	63336291	63336291	Frame_Shift_Del	C	-	p.S61fs
BRCA	TCGA-D8-A1X6-01	TPM2	ENST00000471212.1	chr9	35684247:35684312:35684484:35685136:35685265:35685336,	35684485	35685136	35684822	35684823	Frame_Shift_Ins	-	G	p.R293fs
BRCA	TCGA-E9-A1NC-01	TPST2	ENST00000398110.2,ENST00000403880.1,ENST00000338754.4	chr22	26928660:26928711:26932253:26932452:26936754:26936837,	26932254	26932452	26932298	26932299	Frame_Shift_Ins	-	G	p.N332fs
BRCA	TCGA-D8-A1JE-01	TPTE2	ENST00000462409.1	chr13	19999086:19999157:19999846:19999973:20004607:20004687,	19999847	19999973	19999954	19999955	Frame_Shift_Ins	-	GCGAA	p.R321fs
BRCA	TCGA-D8-A1Y1-01	TPTE2	ENST00000462409.1	chr13	19999086:19999157:19999846:19999973:20004607:20004687,	19999847	19999973	19999954	19999955	Frame_Shift_Ins	-	GCGAA	p.R321fs
BRCA	TCGA-C8-A138-01	TRAPPC10	ENST00000291574.4,ENST00000380221.3,ENST00000422875.1	chr21	45472160:45472357:45475578:45475774:45478983:45479069,	45475579	45475774	45475668	45475668	Frame_Shift_Del	T	-	p.M192fs
BRCA	TCGA-E9-A1ND-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661314	230661315	Frame_Shift_Ins	-	A	p.S1195fs
BRCA	TCGA-A8-A0AB-01	TRIP6	ENST00000476870.1	chr7	100466432:100466488:100467991:100468365:100469164:100469343,	100467992	100468365	100468023	100468023	Frame_Shift_Del	T	-	p.L256fs
BRCA	TCGA-EW-A1PH-01	TROVE2	ENST00000367443.1	chr1	193053708:193053787:193054118:193054170:193060780:193060907,	193054119	193054170	193054120	193054121	Frame_Shift_Ins	-	A	p.T515fs
BRCA	TCGA-D8-A1JT-01	TRPM4	ENST00000598502.1,ENST00000355712.5,ENST00000595071.1,ENST00000596338.1,ENST00000595519.1,ENST00000598697.1,ENST00000252826.5	chr19	49693952:49694030:49699696:49700131:49703556:49703677,	49699697	49700131	49700060	49700061	Frame_Shift_Ins	-	T	p.Y858fs
BRCA	TCGA-B6-A0RM-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116632154	116632163	Frame_Shift_Del	TTCTGACATC	-	p.M55fs
BRCA	TCGA-AR-A256-01	TSPAN32	ENST00000381121.3	chr11	2337458:2337542:2337805:2337897:2338573:2338755,2337458:2337542:2337805:2337897:2339092:2339154,	2337806	2337897	2337833	2337849	Frame_Shift_Del	CTGTGGTTTGCCATCCG	-	p.F221fs
BRCA	TCGA-AO-A03T-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605674	179605674	Frame_Shift_Del	G	-	p.H3925fs
BRCA	TCGA-E9-A1NC-01	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461727:10461838:10463109:10463227:10463601:10463750,	10463110	10463227	10463112	10463113	Frame_Shift_Ins	-	G	p.T1105fs
BRCA	TCGA-E2-A1L8-01	TYK2	ENST00000525621.1,ENST00000264818.6,ENST00000524462.1,ENST00000529370.1	chr19	10475289:10475447:10475526:10475724:10476192:10476484,	10475527	10475724	10475700	10475701	Frame_Shift_Ins	-	C	p.N345fs
BRCA	TCGA-C8-A27B-01	UACA	ENST00000560523.1,ENST00000379983.2,ENST00000558758.1,ENST00000322954.6,ENST00000560167.1,ENST00000560441.1	chr15	70976695:70976785:70979878:70979985:70980088:70980159,	70979879	70979985	70979933	70979949	Frame_Shift_Del	CATATTGTTGGCCTACT	-	p.R179fs
BRCA	TCGA-B6-A0WV-01	UBE2A	ENST00000371558.2	chrX	118709337:118709363:118715469:118715559:118716550:118716639,	118715470	118715559	118715485	118715485	Frame_Shift_Del	C	-	p.T56fs
BRCA	TCGA-E9-A249-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25584283:25584404:25585231:25585375:25599499:25599573,	25585232	25585375	25585293	25585303	Frame_Shift_Del	GTGCTCTGTCT	-	p.D813fs
BRCA	TCGA-E2-A14T-01	UBR7	ENST00000416753.1,ENST00000013070.6,ENST00000553674.1	chr14	93685557:93685707:93686594:93686757:93688658:93688720,	93686595	93686757	93686624	93686624	Frame_Shift_Del	C	-	p.L331fs
BRCA	TCGA-A8-A081-01	USP15	ENST00000280377.5,ENST00000393654.3,ENST00000353364.3	chr12	62775270:62775444:62777620:62777779:62777858:62778083,	62777621	62777779	62777654	62777655	Frame_Shift_Ins	-	GATATCA	p.Q349fs
BRCA	TCGA-AR-A0TS-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134356	161134356	Frame_Shift_Del	T	-	p.S446fs
BRCA	TCGA-B6-A0X1-01	USP43	ENST00000570827.2,ENST00000574408.1,ENST00000575346.1,ENST00000570475.1,ENST00000285199.7	chr17	9583547:9583683:9586139:9586275:9590114:9590180,	9586140	9586275	9586235	9586236	Frame_Shift_Del	CT	-	p.F402fs
BRCA	TCGA-AN-A0AL-01	USPL1	ENST00000255304.4	chr13	31211880:31211994:31216764:31216894:31221068:31221194,	31216765	31216894	31216765	31216781	Frame_Shift_Del	GTGATATGGAAAGCCCT	-	p.D329fs
BRCA	TCGA-B6-A0IE-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82818011	82818011	Frame_Shift_Del	G	-	p.V1296fs
BRCA	TCGA-AN-A0FD-01	WAC	ENST00000442148.1,ENST00000375664.4,ENST00000354911.4,ENST00000375646.1,ENST00000428935.1,ENST00000347934.4,ENST00000420266.1,ENST00000448193.1	chr10	28822926:28822963:28824490:28824686:28872327:28872365,	28824491	28824686	28824639	28824640	Frame_Shift_Del	GT	-	p.S76fs
BRCA	TCGA-B6-A0RS-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49050218	49050246	Frame_Shift_Del	CAAGGTTGTCCCCATCAACACTCCAACTG	-	p.K448fs
BRCA	TCGA-B6-A0RS-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49050218	49050246	Frame_Shift_Del	CAAGGTTGTCCCCATCAACACTCCAACTG	-	p.K448fs
BRCA	TCGA-E9-A1R4-01	WDR66	ENST00000540779.1,ENST00000397454.2,ENST00000288912.4	chr12	122359313:122359589:122361527:122361896:122369651:122369792,	122361528	122361896	122361879	122361880	Frame_Shift_Ins	-	C	p.V246fs
BRCA	TCGA-AO-A0J6-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10094153:10094346:10096027:10096201:10096596:10096748,	10096028	10096201	10096136	10096154	Frame_Shift_Del	GCTGGGTGTGCAGGAGAGA	-	p.G740fs
BRCA	TCGA-E9-A295-01	XBP1	ENST00000344347.5	chr22	29193064:29193193:29195044:29195141:29196285:29196512,	29195045	29195141	29195125	29195126	Frame_Shift_Del	CT	-	p.R81fs
BRCA	TCGA-E9-A295-01	XBP1	ENST00000403532.3	chr22	29193064:29193193:29195029:29195141:29196285:29196512,	29195030	29195141	29195125	29195126	Frame_Shift_Del	CT	-	p.R81fs
BRCA	TCGA-EW-A1IZ-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21361619:21361737:21362624:21362755:21364600:21364719,	21362625	21362755	21362688	21362689	Frame_Shift_Ins	-	T	p.I995fs
BRCA	TCGA-B6-A0RI-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88689626:88689752:88690365:88690470:88691009:88691153,	88690366	88690470	88690436	88690436	Frame_Shift_Del	A	-	p.K622fs
BRCA	TCGA-D8-A1Y1-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.R1893fs
BRCA	TCGA-A8-A0AD-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830410	72830411	Frame_Shift_Ins	-	T	p.P2058fs
BRCA	TCGA-BH-A203-01	ZFP36L1	ENST00000553375.1	chr14	69257049:69257209:69259598:69259787:69262791:69262931,	69259599	69259787	69259611	69259629	Frame_Shift_Del	TTCGCTCAAGTCGAAGATG	-	p.I10fs
BRCA	TCGA-E2-A14W-01	ZFYVE16	ENST00000338008.5,ENST00000512558.1,ENST00000505560.1,ENST00000510158.1	chr5	79741081:79741224:79743844:79744223:79745409:79745532,	79743845	79744223	79743961	79743961	Frame_Shift_Del	G	-	p.E948fs
BRCA	TCGA-E2-A15G-01	ZFYVE27	ENST00000359980.3,ENST00000393677.4,ENST00000356257.4,ENST00000423811.1,ENST00000453958.2	chr10	99498300:99498431:99502850:99502921:99504485:99504661,	99502851	99502921	99502856	99502856	Frame_Shift_Del	A	-	p.Q68fs
BRCA	TCGA-AO-A1KO-01	ZNF337	ENST00000252979.5	chr20	25657584:25657673:25666631:25666758:25667026:25667102,25666202:25666298:25666631:25666758:25667026:25667102,	25666632	25666758	25666719	25666720	Frame_Shift_Del	GG	-	p.Q23fs
BRCA	TCGA-AO-A12E-01	ZNF438	ENST00000609683.1	chr10	31124495:31124569:31139150:31139296:31165926:31165994,	31139151	31139296	31139222	31139222	Frame_Shift_Del	C	-	p.A38fs
BRCA	TCGA-D8-A1JC-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384085	12384094	Frame_Shift_Del	TCATGTGTCT	-	p.R326fs
BRCA	TCGA-AC-A23C-01	ZNF462	ENST00000457913.1,ENST00000441147.2,ENST00000277225.5,ENST00000542028.1,ENST00000374686.2	chr9	109736417:109736554:109746466:109746690:109765574:109765707,	109746467	109746690	109746549	109746552	Frame_Shift_Del	TACC	-	p.T2306fs
BRCA	TCGA-E2-A109-01	ZNF512	ENST00000355467.4	chr2	27805975:27806009:27806524:27806583:27820936:27821121,27805975:27806009:27806524:27806583:27820933:27821054,	27806525	27806583	27806578	27806579	Frame_Shift_Ins	-	A	p.N29fs
BRCA	TCGA-A2-A0YH-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56587811	56587811	Frame_Shift_Del	G	-	p.D765fs
BRCA	TCGA-AN-A0XU-01	ZNF626	ENST00000291750.6	chr19	20828489:20828585:20829084:20829211:20844249:20844343,	20829085	20829211	20829141	20829147	Frame_Shift_Del	TGTGCAG	-	p.T23fs
BRCA	TCGA-A8-A06Q-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149558908	149558908	Frame_Shift_Del	G	-	p.E890fs
CESC	TCGA-BI-A0VR-01	ALG6	ENST00000603108.1,ENST00000462390.1,ENST00000371108.4,ENST00000263440.4,ENST00000465969.1	chr1	63885064:63885111:63894403:63894472:63894598:63894797,	63894404	63894472	63894433	63894434	Frame_Shift_Ins	-	T	p.L363fs
CESC	TCGA-BI-A0VS-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000452905.2,ENST00000393434.2	chr3	125831624:125831723:125833399:125833499:125836847:125836941,	125833400	125833499	125833423	125833424	Frame_Shift_Del	CA	-	p.CD686fs
CESC	TCGA-BI-A0VS-01	IFNGR2	ENST00000545369.2,ENST00000290219.6,ENST00000405436.1,ENST00000381995.1	chr21	34799190:34799339:34804483:34804643:34805020:34805178,	34804484	34804643	34804527	34804528	Frame_Shift_Ins	-	AA	p.*202fs
CESC	TCGA-BI-A0VS-01	WDR44	ENST00000254029.3,ENST00000371848.3,ENST00000371825.3	chrX	117566743:117566857:117570664:117570787:117575330:117575522,	117570665	117570787	117570699	117570702	Frame_Shift_Del	CAGT	-	p.TV629fs
CESC	TCGA-C5-A1BJ-01	RAB6A	ENST00000310653.6,ENST00000536566.1,ENST00000541973.1	chr11	73427295:73427407:73429829:73429935:73431890:73431944,	73429830	73429935	73429893	73429894	Frame_Shift_Ins	-	C	p.*76fs
CESC	TCGA-C5-A1BL-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103182606:103182762:103187273:103187349:103191757:103191966,	103187274	103187349	103187327	103187327	Frame_Shift_Del	C	-	p.N3901fs
CESC	TCGA-C5-A1BL-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
CESC	TCGA-C5-A1M6-01	KPNA6	ENST00000471599.1	chr1	32573658:32573735:32620188:32620322:32622453:32622528,	32620189	32620322	32620238	32620238	Frame_Shift_Del	G	-	p.K18fs
CESC	TCGA-C5-A1M6-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580551	7580552	Frame_Shift_Ins	-	AG	p.P1377fs
CESC	TCGA-C5-A1M7-01	TBC1D7	ENST00000606214.1,ENST00000356436.4,ENST00000379307.2,ENST00000343141.4,ENST00000379300.3	chr6	13305308:13305419:13306629:13306759:13307831:13307977,	13306630	13306759	13306678	13306682	Frame_Shift_Del	TTTTA	-	p.IK248fs
CESC	TCGA-C5-A1M7-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465981	59465981	Frame_Shift_Del	A	-	p.K890fs
CESC	TCGA-C5-A1ME-01	FAM71F1	ENST00000485070.1	chr7	128358981:128359137:128363250:128363372:128366887:128366922,	128363251	128363372	128363276	128363276	Frame_Shift_Del	C	-	p.S238fs
CESC	TCGA-C5-A1ME-01	SLFN5	ENST00000299977.4	chr17	33587989:33588115:33591201:33591922:33592090:33593379,	33591202	33591922	33591389	33591390	Frame_Shift_Ins	-	A	p.N443fs
CESC	TCGA-C5-A1MF-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
CESC	TCGA-C5-A1MF-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
CESC	TCGA-C5-A1MK-01	LRP6	ENST00000543091.1,ENST00000261349.4,ENST00000538239.1	chr12	12288108:12288234:12291258:12291468:12300299:12300490,	12291259	12291468	12291357	12291358	Frame_Shift_Ins	-	T	p.*1170fs
CESC	TCGA-C5-A1ML-01	SEPT2	ENST00000360051.3,ENST00000391973.2,ENST00000482304.1,ENST00000441533.1,ENST00000428524.1,ENST00000401990.1,ENST00000457335.1,ENST00000402092.2,ENST00000473479.1,ENST00000436795.1,ENST00000437066.1,ENST00000391971.2,ENST00000420786.1,ENST00000467971.1,ENST00000475474.1,ENST00000366210.2,ENST00000434955.1,ENST00000449239.1,ENST00000445030.1	chr2	242254861:242255025:242265407:242265528:242274540:242274561,242255373:242255397:242265407:242265528:242274540:242274561,242263630:242263656:242265407:242265528:242274540:242274561,	242265408	242265528	242265494	242265495	Frame_Shift_Ins	-	A	p.VK32fs
CESC	TCGA-C5-A1ML-01	SEPT2	ENST00000443492.1	chr2	242263630:242263656:242265381:242265528:242274540:242274561,	242265382	242265528	242265494	242265495	Frame_Shift_Ins	-	A	p.VK32fs
CESC	TCGA-C5-A1MQ-01	PTPRC	ENST00000352140.3,ENST00000529828.1	chr1	198661475:198661502:198668692:198668833:198672426:198672475,198661475:198661502:198668692:198668833:198671515:198671659,198666009:198666038:198668692:198668833:198672426:198672475,	198668693	198668833	198668775	198668790	Frame_Shift_Del	CAGCGGCTCCGCCGCC	-	p.FSGSAA125fs
CESC	TCGA-DR-A0ZM-01	MTDH	ENST00000336273.3,ENST00000519934.1	chr8	98699656:98699833:98701265:98701331:98703179:98703266,	98701266	98701331	98701269	98701287	Frame_Shift_Del	ATTCTCATCTAAATGTTCA	-	p.DSHLNVQ250fs
CESC	TCGA-DR-A0ZM-01	UVRAG	ENST00000356136.3,ENST00000528420.1	chr11	75572790:75572825:75590922:75591084:75599872:75599947,	75590923	75591084	75591018	75591018	Frame_Shift_Del	G	-	p.E122fs
CESC	TCGA-DS-A0VM-01	YWHAZ	ENST00000457309.1	chr8	101937149:101937267:101960823:101961128:101965496:101965569,101937149:101937267:101960823:101961128:101964156:101964197,101937149:101937267:101960823:101961128:101965077:101965111,	101960824	101961128	101960892	101960893	Frame_Shift_Ins	-	T	p.A76fs
CESC	TCGA-DS-A0VM-01	YWHAZ	ENST00000395948.2	chr8	101937149:101937267:101960823:101960960:101965077:101965111,	101960824	101960960	101960892	101960893	Frame_Shift_Ins	-	T	p.A76fs
CESC	TCGA-DS-A0VN-01	PPIP5K2	ENST00000321521.9,ENST00000414217.1	chr5	102522020:102522140:102526542:102526683:102530600:102530726,	102526543	102526683	102526607	102526625	Frame_Shift_Del	TTTAAAGCAAGTGGATGAA	-	p.SLKQVDE1118fs
CESC	TCGA-DS-A1OA-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
CESC	TCGA-DS-A1OB-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669529	95669530	Frame_Shift_Ins	-	G	p.V719fs
CESC	TCGA-DS-A1OB-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132379	49132380	Frame_Shift_Del	AG	-	p.PE500fs
CESC	TCGA-DS-A1OC-01	ATP7B	ENST00000242839.4,ENST00000448424.2,ENST00000418097.2,ENST00000400366.3	chr13	52534283:52534458:52535972:52536049:52539007:52539169,	52535973	52536049	52536010	52536011	Frame_Shift_Ins	-	G	p.R637fs
CESC	TCGA-DS-A1OC-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669529	95669530	Frame_Shift_Ins	-	G	p.V719fs
CESC	TCGA-DS-A1OC-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
CESC	TCGA-DS-A1OC-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132379	49132380	Frame_Shift_Del	AG	-	p.PE500fs
CESC	TCGA-DS-A1OD-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132379	49132380	Frame_Shift_Del	AG	-	p.PE500fs
CESC	TCGA-EA-A1QT-01	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31322921	31322939	Frame_Shift_Del	AGCTCCGATGACCACAACT	-	p.AVVVIGA319fs
CESC	TCGA-EX-A1H5-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
CESC	TCGA-EX-A1H5-01	DMD	ENST00000359836.1,ENST00000343523.2,ENST00000474231.1,ENST00000541735.1,ENST00000358062.2,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31792076:31792309:31838091:31838200:31854834:31854900,	31838092	31838200	31838149	31838149	Frame_Shift_Del	G	-	p.Q2418fs
CESC	TCGA-FU-A23L-01	RPS6KA1	ENST00000374163.1,ENST00000530003.1,ENST00000526792.1,ENST00000531382.1,ENST00000374168.2,ENST00000374166.4,ENST00000374162.2	chr1	26898339:26898416:26898666:26898784:26899714:26899852,	26898667	26898784	26898762	26898763	Frame_Shift_Del	AC	-	p.N642fs
CESC	TCGA-FU-A23L-01	SPTLC2	ENST00000216484.2,ENST00000554901.1	chr14	78043109:78043258:78045297:78045452:78063528:78063664,	78045298	78045452	78045373	78045385	Frame_Shift_Del	CGATTCCAGTTGT	-	p.DNWNR132fs
ACC	TCGA-PK-A5HB-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E555fs
ACC	TCGA-PK-A5HB-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560464	75560464	Frame_Shift_Del	C	-	p.S1693fs
ACC	TCGA-PK-A5HB-01	RORA	ENST00000309157.4,ENST00000261523.5,ENST00000335670.6,ENST00000449337.2	chr15	60797804:60797828:60803424:60803820:60806814:60806956,	60803425	60803820	60803784	60803785	Frame_Shift_Del	TC	-	p.154_154del
ACC	TCGA-PK-A5HB-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898610	159898610	Frame_Shift_Del	C	-	p.P841fs
ACC	TCGA-PK-A5HB-01	SCRN3	ENST00000490927.1	chr2	175260472:175260545:175264649:175264831:175265717:175265782,	175264650	175264831	175264719	175264720	Frame_Shift_Ins	-	G	p.W70fs
ACC	TCGA-OR-A5LB-01	MIB2	ENST00000506488.1,ENST00000378710.3,ENST00000378712.1,ENST00000505820.2,ENST00000357210.4,ENST00000378708.1,ENST00000464570.1,ENST00000360522.4,ENST00000520777.1,ENST00000487053.1,ENST00000489635.1,ENST00000479659.1,ENST00000504599.1,ENST00000511502.1,ENST00000473511.1,ENST00000514234.1,ENST00000355826.5,ENST00000518681.1	chr1	1563652:1563779:1563868:1564102:1564512:1564543,	1563869	1564102	1564067	1564067	Frame_Shift_Del	G	-	p.A657fs
ACC	TCGA-OR-A5J5-01	EML2	ENST00000245925.3,ENST00000586195.1,ENST00000587152.1,ENST00000536630.1,ENST00000399594.3,ENST00000586902.1,ENST00000588000.1,ENST00000589876.1,ENST00000590580.1,ENST00000588308.1	chr19	46124811:46124895:46129962:46130097:46133208:46133290,46127977:46128076:46129962:46130097:46136118:46136229,46127977:46128076:46129962:46130097:46133208:46133290,	46129963	46130097	46129994	46129994	Frame_Shift_Del	C	-	p.G237fs
ACC	TCGA-OR-A5J5-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672365	151672365	Frame_Shift_Del	C	-	p.E848fs
ACC	TCGA-OR-A5KB-01	EFTUD2	ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000590367.1,ENST00000426333.2,ENST00000586276.1	chr17	42929776:42929930:42930663:42930758:42930884:42931003,	42930664	42930758	42930702	42930703	Frame_Shift_Ins	-	TC	p.D806fs
ACC	TCGA-OR-A5JP-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574011	7574012	Frame_Shift_Ins	-	CGAAG	p.E300fs
ACC	TCGA-OR-A5JP-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000473505.1,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21586805:21586885:21599191:21599404:21605683:21605825,	21599192	21599404	21599251	21599252	Frame_Shift_Ins	-	GT	p.R133fs
ACC	TCGA-OR-A5JT-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115260577:115260837:115261233:115261366:115262199:115262363,	115261234	115261366	115261240	115261241	Frame_Shift_Ins	-	T	p.N750fs
ACC	TCGA-OR-A5JA-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166410:67166634:67167031:67167136:67168159:67168228,	67167032	67167136	67167109	67167110	Frame_Shift_Del	CA	-	p.105_105del
ACC	TCGA-OR-A5LJ-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559113	Frame_Shift_Del	G	-	p.P1043fs
ACC	TCGA-OR-A5LJ-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.823_823del
ACC	TCGA-OR-A5LJ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938582	76938585	Frame_Shift_Del	TGAT	-	p.684_685del
ACC	TCGA-OR-A5JL-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574023	7574023	Frame_Shift_Del	C	-	p.R296fs
ACC	TCGA-OR-A5KP-01	PPP1CA	ENST00000376745.4,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166210:67166327:67166410:67166634:67168159:67168290,67166210:67166327:67166410:67166634:67167031:67167077,	67166411	67166634	67166486	67166487	Frame_Shift_Del	AG	-	p.180_181del
ACC	TCGA-OR-A5JE-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33288834	33288835	Frame_Shift_Del	AT	-	p.165_165del
ACC	TCGA-OR-A5JB-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829226	72829226	Frame_Shift_Del	G	-	p.P1538fs
ACC	TCGA-OR-A5JB-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829227	72829228	Frame_Shift_Del	GC	-	p.1538_1538del
ACC	TCGA-OR-A5JB-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000405358.4,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13950906:13950932:13971126:13971374:13975332:13975508,	13971127	13971374	13971174	13971174	Frame_Shift_Del	G	-	p.P212fs
ACC	TCGA-OR-A5JB-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000405358.4,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13950906:13950932:13971126:13971374:13975332:13975508,	13971127	13971374	13971176	13971177	Frame_Shift_Del	GG	-	p.211_212del
ACC	TCGA-OR-A5JM-01	UBTF	ENST00000302904.4,ENST00000527034.1,ENST00000529383.1,ENST00000533177.1,ENST00000526094.1,ENST00000436088.1,ENST00000393606.3,ENST00000343638.5	chr17	42287685:42287841:42288159:42288315:42288406:42288520,	42288160	42288315	42288160	42288162	Frame_Shift_Del	CTT	-	p.416_416del
BRCA	TCGA-A2-A0T7-01	DIO2	ENST00000555844.1	chr14	80669161:80669631:80672573:80672681:80677593:80677657,80671944:80672078:80672573:80672681:80677593:80677657,	80672574	80672681	80672615	80672619	Frame_Shift_Del	TATAA	-	p.Y96fs
BRCA	TCGA-A8-A06U-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324373	31324373	Frame_Shift_Del	A	-	p.L136fs
BRCA	TCGA-AN-A0FS-01	SULT1C3	ENST00000376700.1	chr2	108875189:108875284:108875421:108875602:108877023:108877136,	108875422	108875602	108875465	108875486	Frame_Shift_Del	AAACTTGGTCAGGTGATGTTAT	-	p.W224fs
BRCA	TCGA-AO-A03T-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473071	56473086	Frame_Shift_Del	TGACTTGAGAACTTTC	-	p.E1577fs
BRCA	TCGA-BH-A0DH-01	NEK1	ENST00000507142.1,ENST00000439128.2	chr4	170458959:170459062:170476870:170477002:170477082:170477186,	170476871	170477002	170476976	170476976	Frame_Shift_Del	C	-	p.G486fs
BRCA	TCGA-AN-A0XN-01	SULT1C3	ENST00000376700.1	chr2	108875189:108875284:108875421:108875602:108877023:108877136,	108875422	108875602	108875465	108875486	Frame_Shift_Del	AAACTTGGTCAGGTGATGTTAT	-	p.W224fs
BRCA	TCGA-A2-A0T0-01	PDE6G	ENST00000573076.1,ENST00000331056.5	chr17	79618674:79618715:79620189:79620394:79623522:79623601,	79620190	79620394	79620348	79620348	Frame_Shift_Del	G	-	p.V47fs
BRCA	TCGA-A1-A0SM-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875711	27875711	Frame_Shift_Del	G	-	p.G973fs
BRCA	TCGA-A8-A093-01	BAIAP2	ENST00000572918.1,ENST00000571530.1,ENST00000572329.1,ENST00000576470.1,ENST00000573894.1,ENST00000321300.6,ENST00000575712.1,ENST00000435091.3,ENST00000321280.7,ENST00000575245.1,ENST00000575750.1,ENST00000428708.2	chr17	79027467:79027543:79031680:79031767:79058631:79058693,	79031681	79031767	79031739	79031740	Frame_Shift_Ins	-	A	p.S63fs
BRCA	TCGA-BH-A0BJ-01	C19orf57	ENST00000346736.2,ENST00000454313.1,ENST00000586783.1	chr19	13996773:13996868:14000000:14001275:14003598:14003703,	14000001	14001275	14000926	14000926	Frame_Shift_Del	T	-	p.D248fs
BRCA	TCGA-BH-A0BM-01	CACNA1B	ENST00000277551.2,ENST00000371357.1,ENST00000371363.1,ENST00000371372.1,ENST00000277549.5,ENST00000371355.4	chr9	140852049:140852139:140865834:140866044:140870358:140870471,	140865835	140866044	140866030	140866030	Frame_Shift_Del	T	-	p.T511fs
BRCA	TCGA-A8-A06X-01	CBLC	ENST00000341505.4,ENST00000270279.3	chr19	45284161:45284308:45284463:45284620:45285626:45285744,	45284464	45284620	45284602	45284602	Frame_Shift_Del	C	-	p.F214fs
BRCA	TCGA-AQ-A04J-01	CLIP2	ENST00000395060.1,ENST00000223398.6,ENST00000361545.5	chr7	73800850:73800927:73803432:73803589:73811403:73811495,73800850:73800934:73803432:73803589:73811403:73811495,	73803433	73803589	73803543	73803544	Frame_Shift_Ins	-	G	p.S892fs
BRCA	TCGA-AQ-A04J-01	CLIP2	ENST00000395060.1,ENST00000223398.6,ENST00000361545.5	chr7	73800850:73800927:73803432:73803589:73811403:73811495,73800850:73800934:73803432:73803589:73811403:73811495,	73803433	73803589	73803546	73803547	Frame_Shift_Ins	-	T	p.G893fs
BRCA	TCGA-AO-A03L-01	CRHR1	ENST00000339069.5	chr17	43884439:43884463:43893828:43893948:43898720:43898806,43884439:43884463:43893828:43893948:43906580:43906687,	43893829	43893948	43893925	43893925	Frame_Shift_Del	A	-	p.Y73fs
BRCA	TCGA-A2-A0D1-01	ECH1	ENST00000221418.4	chr19	39306573:39306647:39306923:39306995:39307092:39307163,	39306924	39306995	39306943	39306943	Frame_Shift_Del	G	-	p.L238fs
BRCA	TCGA-A8-A0A4-01	FAM129A	ENST00000367511.3	chr1	184800980:184801096:184853766:184853934:184859241:184859319,	184853767	184853934	184853799	184853799	Frame_Shift_Del	A	-	p.L190fs
BRCA	TCGA-E2-A14T-01	HAPLN2	ENST00000456112.1,ENST00000255039.1	chr1	156593258:156593367:156593598:156593952:156594142:156594259,	156593599	156593952	156593871	156593872	Frame_Shift_Ins	-	T	p.E121fs
BRCA	TCGA-E2-A15M-01	KLRC1	ENST00000359151.3,ENST00000536188.1,ENST00000544822.1	chr12	10601835:10601987:10602512:10602566:10603082:10603178,	10602513	10602566	10602545	10602545	Frame_Shift_Del	T	-	p.N102fs
BRCA	TCGA-A7-A0DB-01	NOL6	ENST00000297990.4,ENST00000379471.2,ENST00000353159.2	chr9	33469204:33469339:33469496:33469665:33470009:33470189,	33469497	33469665	33469529	33469530	Frame_Shift_Ins	-	G	p.H232fs
BRCA	TCGA-BH-A0AY-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21088330:21088482:21088682:21088841:21096515:21096643,	21088683	21088841	21088763	21088764	Frame_Shift_Ins	-	T	p.A1215fs
BRCA	TCGA-BH-A0BC-01	PLA2G4D	ENST00000290472.3	chr15	42359880:42361139:42362106:42362293:42362914:42363081,	42362107	42362293	42362138	42362138	Frame_Shift_Del	G	-	p.N734fs
BRCA	TCGA-AN-A0FY-01	PLD4	ENST00000557573.1,ENST00000540372.1,ENST00000392593.4	chr14	105395643:105395764:105396314:105396442:105397078:105397138,	105396315	105396442	105396393	105396393	Frame_Shift_Del	G	-	p.H224fs
BRCA	TCGA-A8-A0A4-01	PLXDC1	ENST00000578517.1,ENST00000493200.1,ENST00000394318.3	chr17	37234201:37234301:37235356:37235781:37239711:37239793,	37235357	37235781	37235707	37235707	Frame_Shift_Del	G	-	p.S282fs
BRCA	TCGA-A8-A0A4-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1653225	1653226	Frame_Shift_Ins	-	G	p.N776fs
BRCA	TCGA-A1-A0SM-01	SEZ6L2	ENST00000537485.1,ENST00000350527.3,ENST00000308713.5,ENST00000346932.5	chr16	29884858:29885050:29888076:29888271:29888591:29888788,	29888077	29888271	29888138	29888138	Frame_Shift_Del	G	-	p.D682fs
BRCA	TCGA-A8-A08I-01	SLC25A39	ENST00000588767.1	chr17	42397722:42397804:42397989:42398117:42398425:42398477,	42397990	42398117	42397996	42397996	Frame_Shift_Del	T	-	p.T267fs
BRCA	TCGA-A8-A08I-01	SLC25A39	ENST00000537904.2,ENST00000591006.1,ENST00000377095.5,ENST00000590194.1,ENST00000225308.8,ENST00000592372.1,ENST00000586016.1	chr17	42397722:42397804:42397989:42398099:42398665:42398892,42397722:42397804:42397989:42398099:42398425:42398477,	42397990	42398099	42397996	42397996	Frame_Shift_Del	T	-	p.T267fs
BRCA	TCGA-BH-A0BL-01	SLC39A14	ENST00000240095.6,ENST00000381237.1	chr8	22224817:22224921:22262208:22262493:22265822:22265920,	22262209	22262493	22262288	22262288	Frame_Shift_Del	G	-	p.W22fs
BRCA	TCGA-BH-A0BA-01	VILL	ENST00000383759.2,ENST00000484717.1,ENST00000283713.6	chr3	38039580:38039659:38039756:38039855:38040402:38040541,	38039757	38039855	38039827	38039827	Frame_Shift_Del	A	-	p.E305fs
COAD	TCGA-G4-6299-01	A2M	ENST00000542567.1,ENST00000318602.7	chr12	9231839:9231927:9232234:9232411:9232689:9232773,	9232235	9232411	9232268	9232269	Frame_Shift_Del	TC	-	p.1000_1000del
COAD	TCGA-D5-6928-01	AACS	ENST00000441247.2,ENST00000316519.6,ENST00000261686.6,ENST00000316543.10	chr12	125599022:125599103:125603186:125603311:125609250:125609315,	125603187	125603311	125603260	125603260	Frame_Shift_Del	C	-	p.S357fs
COAD	TCGA-A6-5665-01	AARS	ENST00000261772.8,ENST00000565361.2	chr16	70289637:70289739:70291935:70292120:70292882:70293089,	70291936	70292120	70291982	70291983	Frame_Shift_Ins	-	G	p.S711fs
COAD	TCGA-F4-6856-01	AASS	ENST00000358954.2	chr7	121721553:121721649:121726065:121726233:121731756:121731897,121722841:121722945:121726065:121726233:121731756:121731897,	121726066	121726233	121726174	121726174	Frame_Shift_Del	A	-	p.P693fs
COAD	TCGA-G4-6588-01	ABAT	ENST00000425191.2,ENST00000567812.1,ENST00000396600.2,ENST00000565671.1,ENST00000268251.8,ENST00000569156.1,ENST00000566590.1	chr16	8841964:8841994:8844278:8844396:8851613:8851661,	8844279	8844396	8844296	8844296	Frame_Shift_Del	T	-	p.H72fs
COAD	TCGA-AD-6895-01	ABCA10	ENST00000519732.1	chr17	67161104:67161224:67170421:67170535:67170747:67170918,67161104:67161224:67170421:67170535:67171546:67171654,	67170422	67170535	67170424	67170425	Frame_Shift_Ins	-	A	p.I1054fs
COAD	TCGA-DM-A282-01	ABCA13	ENST00000435803.1,ENST00000417403.1	chr7	48258950:48259102:48260877:48260906:48266858:48267022,	48260878	48260906	48260896	48260897	Frame_Shift_Ins	-	T	p.S153fs
COAD	TCGA-G4-6310-01	ABCA13	ENST00000435803.1,ENST00000417403.1	chr7	48258950:48259102:48260877:48260906:48266858:48267022,	48260878	48260906	48260896	48260897	Frame_Shift_Ins	-	T	p.S153fs
COAD	TCGA-AZ-4615-01	ABCB1	ENST00000543898.1,ENST00000265724.3	chr7	87160609:87160813:87165773:87165857:87168583:87168661,	87165774	87165857	87165829	87165829	Frame_Shift_Del	T	-	p.N809fs
COAD	TCGA-CM-4746-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87080938:87081110:87082259:87082451:87083850:87083908,	87082260	87082451	87082334	87082334	Frame_Shift_Del	A	-	p.H155fs
COAD	TCGA-CK-5913-01	ABCC12	ENST00000534418.1,ENST00000532494.1,ENST00000311303.3,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48134782:48134920:48138052:48138279:48139049:48139247,	48138053	48138279	48138147	48138148	Frame_Shift_Ins	-	A	p.M936fs
COAD	TCGA-A6-5661-01	ABCC3	ENST00000510891.1,ENST00000513745.1,ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48752991:48753136:48753243:48753451:48753638:48753650,	48753244	48753451	48753281	48753282	Frame_Shift_Ins	-	G	p.V966fs
COAD	TCGA-AZ-4615-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735432	95735432	Frame_Shift_Del	A	-	p.L883fs
COAD	TCGA-CM-4743-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735432	95735432	Frame_Shift_Del	A	-	p.L883fs
COAD	TCGA-D5-6540-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89022381:89022471:89028335:89028418:89034454:89034699,	89028336	89028418	89028360	89028360	Frame_Shift_Del	T	-	p.N418fs
COAD	TCGA-G4-6628-01	ABHD2	ENST00000562073.1,ENST00000565973.1,ENST00000352732.5,ENST00000355100.3	chr15	89694907:89695083:89698597:89698765:89719042:89719226,	89698598	89698765	89698681	89698681	Frame_Shift_Del	A	-	p.Q151fs
COAD	TCGA-CM-5861-01	ABL2	ENST00000392043.3,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3	chr1	179081443:179081533:179084012:179084165:179086466:179086651,	179084013	179084165	179084038	179084039	Frame_Shift_Ins	-	G	p.P497fs
COAD	TCGA-D5-6540-01	ABR	ENST00000544583.2	chr17	1003876:1003975:1028517:1028702:1090093:1090616,	1028518	1028702	1028558	1028559	Frame_Shift_Ins	-	C	p.D69fs
COAD	TCGA-CK-5916-01	ABR	ENST00000574437.1,ENST00000536794.2,ENST00000291107.2,ENST00000544583.2,ENST00000574544.1,ENST00000302538.5	chr17	961984:962107:970316:970482:973208:973223,	970317	970482	970445	970445	Frame_Shift_Del	G	-	p.L315fs
COAD	TCGA-G4-6628-01	ABTB1	ENST00000232744.8,ENST00000393363.3,ENST00000475042.1,ENST00000453791.2,ENST00000468137.1	chr3	127396307:127396406:127396518:127396686:127398827:127398900,	127396519	127396686	127396605	127396605	Frame_Shift_Del	C	-	p.G174fs
COAD	TCGA-AM-5820-01	ACADVL	ENST00000542255.2,ENST00000356839.5,ENST00000583850.1,ENST00000543245.2,ENST00000322910.5,ENST00000579546.1,ENST00000350303.5,ENST00000583858.1	chr17	7127005:7127049:7127131:7127194:7127286:7127388,	7127132	7127194	7127173	7127173	Frame_Shift_Del	G	-	p.M437fs
COAD	TCGA-AM-5820-01	ACADVL	ENST00000585203.2	chr17	7127005:7127049:7127131:7127177:7127286:7127388,	7127132	7127177	7127173	7127173	Frame_Shift_Del	G	-	p.M437fs
COAD	TCGA-G4-6309-01	ACADVL	ENST00000542255.2,ENST00000356839.5,ENST00000583850.1,ENST00000543245.2,ENST00000322910.5,ENST00000579546.1,ENST00000350303.5,ENST00000583858.1	chr17	7127005:7127049:7127131:7127194:7127286:7127388,	7127132	7127194	7127173	7127173	Frame_Shift_Del	G	-	p.M437fs
COAD	TCGA-G4-6309-01	ACADVL	ENST00000585203.2	chr17	7127005:7127049:7127131:7127177:7127286:7127388,	7127132	7127177	7127173	7127173	Frame_Shift_Del	G	-	p.M437fs
COAD	TCGA-A6-5665-01	ACAN	ENST00000560601.1	chr15	89402306:89402648:89403556:89403670:89414612:89414721,89402306:89402648:89403556:89403670:89411446:89411560,	89403557	89403670	89403636	89403636	Frame_Shift_Del	C	-	p.C2304fs
COAD	TCGA-A6-6653-01	ACAT1	ENST00000527942.1,ENST00000299355.6,ENST00000524833.1,ENST00000265838.4,ENST00000531853.1,ENST00000531813.1	chr11	108002633:108002681:108004546:108004664:108004947:108004971,	108004547	108004664	108004588	108004588	Frame_Shift_Del	T	-	p.S54fs
COAD	TCGA-A6-6781-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000582678.1	chr17	61559826:61560050:61560389:61560534:61560820:61560919,	61560390	61560534	61560412	61560412	Frame_Shift_Del	A	-	p.L455fs
COAD	TCGA-G4-6588-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000582678.1	chr17	61559826:61560050:61560389:61560534:61560820:61560919,	61560390	61560534	61560495	61560495	Frame_Shift_Del	C	-	p.T483fs
COAD	TCGA-CK-4947-01	ACOT12	ENST00000307624.3	chr5	80641703:80641823:80643592:80643749:80655721:80655857,	80643593	80643749	80643739	80643739	Frame_Shift_Del	A	-	p.D170fs
COAD	TCGA-AZ-6598-01	ACOX2	ENST00000467738.1,ENST00000459701.2,ENST00000302819.5	chr3	58508222:58508328:58510152:58510332:58512192:58512383,	58510153	58510332	58510265	58510266	Frame_Shift_Del	GA	-	p.472_472del
COAD	TCGA-AA-3660-01	ACOX2	ENST00000492530.1,ENST00000466810.1,ENST00000459701.2,ENST00000302819.5	chr3	58517047:58517093:58517419:58517539:58519171:58519279,	58517420	58517539	58517448	58517448	Frame_Shift_Del	C	-	p.S226fs
COAD	TCGA-G4-6588-01	ACP1	ENST00000484464.1,ENST00000480874.1,ENST00000442386.1,ENST00000272065.5	chr2	271865:271939:272036:272150:276979:277085,271892:271939:272036:272150:275139:275200,	272037	272150	272080	272081	Frame_Shift_Ins	-	C	p.N54fs
COAD	TCGA-A6-6653-01	ACP1	ENST00000484464.1,ENST00000480874.1,ENST00000442386.1,ENST00000272065.5	chr2	271865:271939:272036:272150:276979:277085,271892:271939:272036:272150:275139:275200,	272037	272150	272081	272081	Frame_Shift_Del	C	-	p.N54fs
COAD	TCGA-AM-5820-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489925	20489925	Frame_Shift_Del	C	-	p.L402fs
COAD	TCGA-D5-6930-01	ACSM3	ENST00000562251.1,ENST00000289416.5,ENST00000567387.1,ENST00000450120.2	chr16	20803557:20803657:20807691:20807811:20808207:20808251,	20807692	20807811	20807775	20807776	Frame_Shift_Ins	-	A	p.V546fs
COAD	TCGA-CM-4743-01	ACVR1B	ENST00000563121.1	chr12	52377818:52377950:52378975:52379132:52385646:52385776,	52378976	52379132	52379121	52379121	Frame_Shift_Del	G	-	p.V375fs
COAD	TCGA-AZ-6598-01	ADAM15	ENST00000355956.2	chr1	155033243:155033308:155033890:155033965:155034379:155034436,155033238:155033308:155033890:155033965:155034720:155034772,	155033891	155033965	155033916	155033916	Frame_Shift_Del	C	-	p.A768fs
COAD	TCGA-AZ-6598-01	ADAM15	ENST00000368412.3	chr1	155033243:155033308:155033893:155033965:155034379:155034436,155033238:155033308:155033893:155033965:155034051:155034122,155032680:155032819:155033893:155033965:155034720:155034772,	155033894	155033965	155033916	155033916	Frame_Shift_Del	C	-	p.A768fs
COAD	TCGA-CM-6171-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.L72fs
COAD	TCGA-G4-6588-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167473	Frame_Shift_Del	A	-	p.L72fs
COAD	TCGA-CM-6166-01	ADAMTS14	ENST00000373207.1,ENST00000373208.1	chr10	72504981:72505062:72509577:72509741:72511233:72511402,	72509578	72509741	72509628	72509629	Frame_Shift_Ins	-	A	p.E775fs
COAD	TCGA-A6-6142-01	ADAMTS18	ENST00000282849.5	chr16	77356232:77356363:77359762:77359935:77369652:77369801,	77359763	77359935	77359845	77359845	Frame_Shift_Del	A	-	p.R651fs
COAD	TCGA-D5-6930-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1	chr3	64587619:64587889:64589597:64589765:64589902:64590007,	64589598	64589765	64589680	64589680	Frame_Shift_Del	C	-	p.C1222fs
COAD	TCGA-D5-6540-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.C392fs
COAD	TCGA-CM-4743-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680350	18680350	Frame_Shift_Del	G	-	p.C392fs
COAD	TCGA-F4-6856-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680350	18680350	Frame_Shift_Del	G	-	p.C392fs
COAD	TCGA-AA-3663-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529625:150529811:150529969:150530099:150530420:150530625,	150529970	150530099	150530090	150530091	Frame_Shift_Ins	-	C	p.C723fs
COAD	TCGA-AA-3713-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.F754fs
COAD	TCGA-AD-6889-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.F754fs
COAD	TCGA-AU-6004-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.F754fs
COAD	TCGA-AZ-4615-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.F754fs
COAD	TCGA-G4-6320-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.F754fs
COAD	TCGA-G4-6586-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.F754fs
COAD	TCGA-A6-5665-01	ADAT1	ENST00000568001.1	chr16	75646701:75646759:75651039:75651170:75654163:75654232,	75651040	75651170	75651065	75651065	Frame_Shift_Del	A	-	p.V134fs
COAD	TCGA-G4-6309-01	ADCY5	ENST00000466617.1,ENST00000462833.1,ENST00000309879.5,ENST00000491190.1,ENST00000468683.1	chr3	123021901:123022066:123022913:123023030:123033081:123033169,	123022914	123023030	123023016	123023017	Frame_Shift_Ins	-	G	p.P819fs
COAD	TCGA-A6-5661-01	ADD1	ENST00000398123.2,ENST00000264758.7,ENST00000514940.1,ENST00000398125.1,ENST00000503455.2	chr4	2900985:2901162:2906490:2906835:2909469:2909540,	2906491	2906835	2906788	2906791	Frame_Shift_Del	TCTC	-	p.486_487del
COAD	TCGA-AZ-6601-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2	chr2	100209656:100210751:100217896:100218083:100266087:100266128,	100217897	100218083	100217914	100217914	Frame_Shift_Del	G	-	p.H452fs
COAD	TCGA-AA-3663-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232258	132232258	Frame_Shift_Del	A	-	p.R689fs
COAD	TCGA-AA-3713-01	AFF4	ENST00000378593.2,ENST00000378595.3,ENST00000491831.1,ENST00000265343.5	chr5	132240059:132240096:132262812:132262899:132267869:132267914,	132262813	132262899	132262874	132262874	Frame_Shift_Del	G	-	p.P330fs
COAD	TCGA-AA-3663-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74310709:74310839:74313178:74313393:74315051:74315184,	74313179	74313393	74313371	74313372	Frame_Shift_Ins	-	A	p.E346fs
COAD	TCGA-AZ-4615-01	AGBL3	ENST00000359383.3,ENST00000476700.1	chr7	134674000:134674061:134678243:134678429:134701802:134701910,134674000:134674061:134678243:134678429:134694792:134695016,	134678244	134678429	134678269	134678269	Frame_Shift_Del	C	-	p.F50fs
COAD	TCGA-AY-6197-01	AGBL5	ENST00000360131.4	chr2	27291915:27291962:27292440:27292574:27292959:27293488,27291499:27291612:27292440:27292574:27292959:27293488,	27292441	27292574	27292517	27292517	Frame_Shift_Del	C	-	p.T811fs
COAD	TCGA-A6-6653-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100376267:100376403:100377960:100378073:100379082:100379294,	100377961	100378073	100378027	100378028	Frame_Shift_Ins	-	A	p.S1301fs
COAD	TCGA-D5-6538-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100376267:100376403:100377960:100378073:100379082:100379294,	100377961	100378073	100378027	100378028	Frame_Shift_Ins	-	A	p.S1301fs
COAD	TCGA-AD-6895-01	AGMAT	ENST00000375826.3	chr1	15904179:15904359:15905353:15905549:15906588:15906637,	15905354	15905549	15905397	15905397	Frame_Shift_Del	C	-	p.G226fs
COAD	TCGA-A6-6780-01	AGRN	ENST00000379370.2	chr1	978917:979112:979202:979403:979488:979637,	979203	979403	979279	979279	Frame_Shift_Del	C	-	p.H625fs
COAD	TCGA-AZ-6601-01	AHCYL1	ENST00000369799.5,ENST00000359172.3,ENST00000393614.4,ENST00000481423.1	chr1	110562169:110562248:110563352:110563473:110564295:110564319,	110563353	110563473	110563442	110563442	Frame_Shift_Del	A	-	p.N471fs
COAD	TCGA-CM-6171-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.R587fs
COAD	TCGA-F4-6856-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27878520	27878521	Frame_Shift_Ins	-	G	p.R36fs
COAD	TCGA-AD-6889-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.T304fs
COAD	TCGA-AY-6197-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.T304fs
COAD	TCGA-AZ-6598-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.T304fs
COAD	TCGA-D5-6540-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.T304fs
COAD	TCGA-G4-6588-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.T304fs
COAD	TCGA-G4-6320-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17379095	17379098	Frame_Shift_Del	ATTT	-	p.549_550del
COAD	TCGA-F4-6856-01	AHRR	ENST00000316418.5	chr5	423955:424092:427751:427805:427921:428121,	427752	427805	427756	427756	Frame_Shift_Del	G	-	p.R242fs
COAD	TCGA-AD-5900-01	AIP	ENST00000279146.3	chr11	67254476:67254656:67256737:67256926:67257508:67257685,	67256738	67256926	67256797	67256797	Frame_Shift_Del	C	-	p.D113fs
COAD	TCGA-AD-6964-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673000	151673000	Frame_Shift_Del	C	-	p.I1060fs
COAD	TCGA-CM-4743-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673000	151673000	Frame_Shift_Del	C	-	p.I1060fs
COAD	TCGA-CM-6171-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673902	151673902	Frame_Shift_Del	A	-	p.E1361fs
COAD	TCGA-A6-5665-01	AKAP13	ENST00000394518.2,ENST00000560579.1,ENST00000361243.2,ENST00000394510.2	chr15	86270611:86270694:86273743:86273938:86278222:86278381,	86273744	86273938	86273848	86273849	Frame_Shift_Ins	-	C	p.S2398fs
COAD	TCGA-AM-5820-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735965	4735966	Frame_Shift_Ins	-	C	p.G701fs
COAD	TCGA-AM-5820-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735970	4735970	Frame_Shift_Del	A	-	p.S700fs
COAD	TCGA-CK-5916-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603084	91603085	Frame_Shift_Ins	-	A	p.Q36fs
COAD	TCGA-G4-6309-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603085	91603085	Frame_Shift_Del	A	-	p.Q36fs
COAD	TCGA-AA-3663-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91670017:91670212:91671359:91671500:91671981:91672085,	91671360	91671500	91671392	91671393	Frame_Shift_Del	AG	-	p.1650_1650del
COAD	TCGA-AA-3713-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91670017:91670212:91671359:91671500:91671981:91672085,	91671360	91671500	91671392	91671393	Frame_Shift_Del	AG	-	p.1650_1650del
COAD	TCGA-CM-4746-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3735fs
COAD	TCGA-CM-4746-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3735fs
COAD	TCGA-D5-6927-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3735fs
COAD	TCGA-D5-6927-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3735fs
COAD	TCGA-D5-6930-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3735fs
COAD	TCGA-D5-6930-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3735fs
COAD	TCGA-CM-4743-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732039	91732039	Frame_Shift_Del	G	-	p.M3735fs
COAD	TCGA-CM-4743-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732039	91732039	Frame_Shift_Del	G	-	p.M3735fs
COAD	TCGA-CK-5916-01	AKNA	ENST00000312033.3,ENST00000374088.3,ENST00000307564.4	chr9	117136372:117136447:117138745:117139812:117143339:117143726,	117138746	117139812	117138950	117138950	Frame_Shift_Del	G	-	p.K380fs
COAD	TCGA-D5-6927-01	AKT1S1	ENST00000391832.3,ENST00000391835.1,ENST00000344175.5,ENST00000391831.1,ENST00000391834.2	chr19	50374803:50374973:50375068:50375146:50376173:50376559,	50375069	50375146	50375100	50375100	Frame_Shift_Del	G	-	p.F143fs
COAD	TCGA-AY-6197-01	ALDH16A1	ENST00000433981.2,ENST00000540132.1,ENST00000593417.1,ENST00000293350.4	chr19	49964875:49965057:49965140:49965293:49965826:49966012,	49965141	49965293	49965236	49965236	Frame_Shift_Del	G	-	p.A285fs
COAD	TCGA-AD-5900-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000490367.1,ENST00000393431.2,ENST00000393434.2,ENST00000488356.1,ENST00000460368.1	chr3	125876242:125876351:125877247:125877482:125879695:125879845,	125877248	125877482	125877315	125877315	Frame_Shift_Del	G	-	p.R99fs
COAD	TCGA-AA-3663-01	ALG11	ENST00000521508.1	chr13	52586549:52586598:52593048:52593279:52598141:52599073,	52593049	52593279	52593203	52593203	Frame_Shift_Del	T	-	p.A66fs
COAD	TCGA-G4-6586-01	ALG13	ENST00000394780.3,ENST00000251943.4,ENST00000495283.1	chrX	110928198:110928331:110951254:110951621:110952192:110952257,	110951255	110951621	110951425	110951425	Frame_Shift_Del	T	-	p.L81fs
COAD	TCGA-AD-6889-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73718038	73718038	Frame_Shift_Del	T	-	p.H2983fs
COAD	TCGA-AZ-6598-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202354	56202355	Frame_Shift_Del	TC	-	p.1689_1689del
COAD	TCGA-AD-5900-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56205242	56205243	Frame_Shift_Del	TC	-	p.726_726del
COAD	TCGA-AZ-6598-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
COAD	TCGA-CM-6162-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
COAD	TCGA-G4-6309-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
COAD	TCGA-G4-6588-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
COAD	TCGA-CM-5861-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246940	56246941	Frame_Shift_Ins	-	A	p.L356fs
COAD	TCGA-A6-6780-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L356fs
COAD	TCGA-CM-6162-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112065639	112065639	Frame_Shift_Del	G	-	p.P239fs
COAD	TCGA-A6-5665-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533230	94533230	Frame_Shift_Del	G	-	p.G291fs
COAD	TCGA-CM-4746-01	ANK2	ENST00000394537.3,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000510275.2,ENST00000503423.1,ENST00000509550.1,ENST00000264366.6,ENST00000514960.1	chr4	114262867:114263072:114264172:114264298:114267055:114267178,	114264173	114264298	114264255	114264256	Frame_Shift_Ins	-	T	p.S1402fs
COAD	TCGA-A6-5661-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274588	114274588	Frame_Shift_Del	A	-	p.Q1605fs
COAD	TCGA-AZ-4615-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277508	114277509	Frame_Shift_Ins	-	A	p.E2578fs
COAD	TCGA-A6-5661-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280135	114280135	Frame_Shift_Del	G	-	p.R3454fs
COAD	TCGA-F4-6856-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280135	114280135	Frame_Shift_Del	G	-	p.R3454fs
COAD	TCGA-AA-3713-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828580	61828580	Frame_Shift_Del	T	-	p.K4020fs
COAD	TCGA-AZ-6598-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828580	61828580	Frame_Shift_Del	T	-	p.K4020fs
COAD	TCGA-D5-6928-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828580	61828580	Frame_Shift_Del	T	-	p.K4020fs
COAD	TCGA-CM-6171-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829305	61829305	Frame_Shift_Del	T	-	p.H3779fs
COAD	TCGA-AA-3663-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829817	61829817	Frame_Shift_Del	T	-	p.M3608fs
COAD	TCGA-A6-5661-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832104	61832105	Frame_Shift_Ins	-	C	p.G2845fs
COAD	TCGA-AD-6889-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832804	61832804	Frame_Shift_Del	T	-	p.K2612fs
COAD	TCGA-G4-6588-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2	chr2	190606067:190606177:190608000:190608200:190609467:190609514,	190608001	190608200	190608108	190608108	Frame_Shift_Del	A	-	p.I1306fs
COAD	TCGA-G4-6628-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349356	89349356	Frame_Shift_Del	T	-	p.E1199fs
COAD	TCGA-AZ-4615-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351595	89351595	Frame_Shift_Del	T	-	p.N452fs
COAD	TCGA-AU-6004-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255427	9255427	Frame_Shift_Del	A	-	p.E721fs
COAD	TCGA-AU-6004-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256206	9256207	Frame_Shift_Ins	-	A	p.E981fs
COAD	TCGA-AD-6889-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256207	9256207	Frame_Shift_Del	A	-	p.E981fs
COAD	TCGA-AD-5900-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256311	9256312	Frame_Shift_Ins	-	A	p.E1016fs
COAD	TCGA-A6-5661-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73956601	73956601	Frame_Shift_Del	G	-	p.L1998fs
COAD	TCGA-F4-6807-01	ANKRD18B	ENST00000357927.3,ENST00000290943.6	chr9	33550427:33550577:33555705:33555818:33558055:33558185,	33555706	33555818	33555730	33555731	Frame_Shift_Ins	-	G	p.R685fs
COAD	TCGA-G4-6588-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27303422:27303640:27306430:27306721:27311486:27311616,	27306431	27306721	27306582	27306582	Frame_Shift_Del	T	-	p.K1451fs
COAD	TCGA-CM-4743-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322259	27322259	Frame_Shift_Del	T	-	p.Q1234fs
COAD	TCGA-D5-6529-01	ANKRD54	ENST00000406423.1,ENST00000215941.4,ENST00000407117.2,ENST00000498417.1,ENST00000411961.2,ENST00000458278.2	chr22	38227985:38228024:38228643:38228751:38228964:38229089,	38228644	38228751	38228712	38228712	Frame_Shift_Del	G	-	p.Q254fs
COAD	TCGA-AD-6895-01	ANKRD6	ENST00000520839.1,ENST00000522441.1,ENST00000339746.4,ENST00000518253.1,ENST00000524056.1,ENST00000447838.2	chr6	90326277:90326376:90331640:90331745:90333128:90333179,90327676:90327750:90331640:90331745:90333128:90333179,	90331641	90331745	90331678	90331679	Frame_Shift_Del	AG	-	p.277_277del
COAD	TCGA-AM-5820-01	ANKRD6	ENST00000520839.1,ENST00000522441.1,ENST00000339746.4,ENST00000518253.1,ENST00000524056.1,ENST00000447838.2	chr6	90326277:90326376:90331640:90331745:90333128:90333179,90327676:90327750:90331640:90331745:90333128:90333179,	90331641	90331745	90331678	90331679	Frame_Shift_Del	AG	-	p.277_277del
COAD	TCGA-CM-6162-01	ANLN	ENST00000265748.2,ENST00000396068.2,ENST00000424865.1	chr7	36435874:36436028:36438687:36439002:36445789:36445875,	36438688	36439002	36438715	36438716	Frame_Shift_Ins	-	A	p.S67fs
COAD	TCGA-AZ-6598-01	ANO10	ENST00000396091.3	chr3	43621844:43621964:43640023:43640158:43647205:43647355,	43640024	43640158	43640071	43640072	Frame_Shift_Ins	-	T	p.M142fs
COAD	TCGA-G4-6628-01	ANO10	ENST00000413397.1,ENST00000414522.2,ENST00000439141.1,ENST00000427171.1,ENST00000350459.4,ENST00000444344.1,ENST00000456438.1,ENST00000292246.3	chr3	43640093:43640158:43641875:43642073:43647205:43647355,	43641876	43642073	43641880	43641880	Frame_Shift_Del	A	-	p.D112fs
COAD	TCGA-CM-6171-01	ANO6	ENST00000423947.3,ENST00000435642.1,ENST00000425752.2,ENST00000320560.8,ENST00000441606.2	chr12	45771835:45771896:45781943:45782086:45784203:45784281,	45781944	45782086	45781952	45781952	Frame_Shift_Del	T	-	p.L412fs
COAD	TCGA-AA-3492-01	ANXA11	ENST00000372231.3,ENST00000535999.1,ENST00000438331.1,ENST00000422982.3,ENST00000360615.4,ENST00000537102.1,ENST00000265447.4	chr10	81926981:81927069:81928724:81929114:81930555:81930671,	81928725	81929114	81928878	81928878	Frame_Shift_Del	G	-	p.G137fs
COAD	TCGA-CM-5861-01	ANXA11	ENST00000372231.3,ENST00000535999.1,ENST00000438331.1,ENST00000422982.3,ENST00000360615.4,ENST00000537102.1,ENST00000265447.4	chr10	81926981:81927069:81928724:81929114:81930555:81930671,	81928725	81929114	81929003	81929004	Frame_Shift_Ins	-	G	p.S95fs
COAD	TCGA-AM-5820-01	AP1G2	ENST00000465445.2,ENST00000556966.1,ENST00000397120.3,ENST00000308724.5,ENST00000555510.1,ENST00000535852.2,ENST00000460049.2	chr14	24030617:24030640:24030720:24030844:24031170:24031262,	24030721	24030844	24030801	24030802	Frame_Shift_Ins	-	GCCA	p.P593fs
COAD	TCGA-A6-6781-01	AP1G2	ENST00000465445.2,ENST00000556966.1,ENST00000397120.3,ENST00000308724.5,ENST00000555510.1,ENST00000535852.2,ENST00000460049.2	chr14	24030617:24030640:24030720:24030844:24031170:24031262,	24030721	24030844	24030824	24030825	Frame_Shift_Ins	-	T	p.M585fs
COAD	TCGA-AU-6004-01	AP2A2	ENST00000332231.5,ENST00000448903.2	chr11	994071:994245:1000431:1000598:1003721:1003804,	1000432	1000598	1000475	1000475	Frame_Shift_Del	C	-	p.A668fs
COAD	TCGA-AZ-4615-01	AP2A2	ENST00000534328.1,ENST00000524559.1,ENST00000332231.5,ENST00000531548.1,ENST00000534485.1,ENST00000529818.1,ENST00000528815.1,ENST00000448903.2,ENST00000526753.1,ENST00000530801.1,ENST00000527024.1	chr11	959436:959505:970168:970311:972061:972191,	970169	970311	970195	970195	Frame_Shift_Del	A	-	p.S54fs
COAD	TCGA-AU-6004-01	AP4S1	ENST00000542754.2,ENST00000313566.6,ENST00000554345.1,ENST00000554609.1,ENST00000334725.4,ENST00000216366.4	chr14	31494888:31494993:31535331:31535540:31539048:31539135,	31535332	31535540	31535407	31535408	Frame_Shift_Ins	-	A	p.I2fs
COAD	TCGA-A6-6653-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000561069.1,ENST00000411764.1	chr15	29400472:29400592:29406078:29406219:29409264:29409920,	29406079	29406219	29406115	29406115	Frame_Shift_Del	G	-	p.R691fs
COAD	TCGA-F4-6856-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6423311:6423439:6423805:6423955:6424374:6424438,	6423806	6423955	6423807	6423808	Frame_Shift_Ins	-	C	p.E198fs
COAD	TCGA-G4-6311-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000509732.1,ENST00000257430.4	chr5	112090569:112090722:112102022:112102107:112102885:112103019,	112102023	112102107	112102031	112102032	Frame_Shift_Ins	-	A	p.L58fs
COAD	TCGA-A6-6652-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112102885:112103087:112111325:112111434:112116486:112116600,	112111326	112111434	112111408	112111411	Frame_Shift_Del	ATAG	-	p.168_169del
COAD	TCGA-DM-A1D4-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112154809	112154810	Frame_Shift_Del	AC	-	p.360_360del
COAD	TCGA-AU-6004-01	APEH	ENST00000296456.5,ENST00000469362.2,ENST00000438011.1	chr3	49719154:49719238:49719319:49719400:49719780:49719869,	49719320	49719400	49719325	49719325	Frame_Shift_Del	C	-	p.G509fs
COAD	TCGA-D5-6540-01	APLP2	ENST00000534001.1,ENST00000543137.1,ENST00000338167.5,ENST00000278756.7,ENST00000527702.1,ENST00000263574.5,ENST00000528499.1	chr11	129980468:129980556:129990600:129990713:129991508:129991613,	129990601	129990713	129990648	129990648	Frame_Shift_Del	T	-	p.Q150fs
COAD	TCGA-A6-5665-01	APOA1	ENST00000375323.1,ENST00000236850.4,ENST00000375320.1,ENST00000359492.2	chr11	116706979:116707127:116707716:116707873:116708060:116708123,	116707717	116707873	116707832	116707832	Frame_Shift_Del	G	-	p.Q29fs
COAD	TCGA-A6-6653-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72422474:72422544:72423240:72423384:72423482:72423613,	72423241	72423384	72423258	72423258	Frame_Shift_Del	G	-	p.K336fs
COAD	TCGA-AA-3713-01	ARAP1	ENST00000359373.5,ENST00000393609.3	chr11	72425196:72425366:72437664:72438217:72443559:72443642,	72437665	72438217	72437677	72437678	Frame_Shift_Ins	-	G	p.R166fs
COAD	TCGA-CK-5913-01	ARF5	ENST00000463733.1,ENST00000415666.1,ENST00000489673.1	chr7	127228466:127228619:127229136:127229217:127229538:127229628,	127229137	127229217	127229186	127229186	Frame_Shift_Del	G	-	p.L39fs
COAD	TCGA-AD-6889-01	ARFGAP1	ENST00000520485.1,ENST00000518794.2,ENST00000370283.4,ENST00000523460.1,ENST00000519273.2,ENST00000549047.1,ENST00000468975.2	chr20	61917005:61917065:61917717:61917794:61918915:61919040,	61917718	61917794	61917759	61917760	Frame_Shift_Ins	-	T	p.T292fs
COAD	TCGA-AD-6889-01	ARFGAP1	ENST00000519604.1,ENST00000353546.3,ENST00000547204.1	chr20	61917005:61917065:61917723:61917794:61918915:61919040,	61917724	61917794	61917759	61917760	Frame_Shift_Ins	-	T	p.T292fs
COAD	TCGA-AZ-4615-01	ARFGAP2	ENST00000529455.1	chr11	47193862:47193884:47196732:47196864:47197401:47197474,	47196733	47196864	47196853	47196853	Frame_Shift_Del	A	-	p.R93fs
COAD	TCGA-CM-6674-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
COAD	TCGA-AZ-6598-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128856	68128856	Frame_Shift_Del	G	-	p.P1552fs
COAD	TCGA-AD-6895-01	ARHGAP21	ENST00000396432.2,ENST00000486374.1	chr10	24878199:24878231:24880153:24880259:24880570:24880612,	24880154	24880259	24880209	24880210	Frame_Shift_Del	TA	-	p.1365_1366del
COAD	TCGA-G4-6628-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909254	24909255	Frame_Shift_Ins	-	T	p.Q524fs
COAD	TCGA-A6-5665-01	ARHGAP33	ENST00000314737.5,ENST00000378944.5,ENST00000221905.1,ENST00000007510.4	chr19	36269181:36269262:36269365:36269503:36269933:36270026,	36269366	36269503	36269476	36269477	Frame_Shift_Ins	-	C	p.P127fs
COAD	TCGA-D5-6927-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145773375	145773375	Frame_Shift_Del	G	-	p.S366fs
COAD	TCGA-G4-6586-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145773375	145773375	Frame_Shift_Del	G	-	p.S366fs
COAD	TCGA-G4-6628-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561374	32561374	Frame_Shift_Del	T	-	p.L500fs
COAD	TCGA-D5-6930-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562674	32562675	Frame_Shift_Ins	-	T	p.L933fs
COAD	TCGA-AD-6889-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562695	32562696	Frame_Shift_Ins	-	A	p.E940fs
COAD	TCGA-A6-6781-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000375420.3,ENST00000434513.1,ENST00000475356.1,ENST00000167825.4,ENST00000452522.1	chr1	17961329:17961511:17964382:17964498:17965056:17965184,	17964383	17964498	17964399	17964399	Frame_Shift_Del	C	-	p.G609fs
COAD	TCGA-G4-6588-01	ARHGEF19	ENST00000270747.3	chr1	16534438:16534720:16535137:16535578:16538996:16539104,	16535138	16535578	16535271	16535271	Frame_Shift_Del	C	-	p.M94fs
COAD	TCGA-CK-5916-01	ARHGEF1	ENST00000347545.4,ENST00000337665.4,ENST00000600274.1,ENST00000595897.1,ENST00000354532.3,ENST00000599846.1	chr19	42410090:42410177:42410608:42410772:42410854:42410955,	42410609	42410772	42410689	42410689	Frame_Shift_Del	G	-	p.P872fs
COAD	TCGA-CM-6162-01	ARHGEF26	ENST00000496710.1,ENST00000356448.4,ENST00000465093.1	chr3	153909077:153909207:153912432:153912507:153935657:153935747,	153912433	153912507	153912442	153912443	Frame_Shift_Ins	-	A	p.Q594fs
COAD	TCGA-D5-6540-01	ARHGEF3	ENST00000495373.1,ENST00000498517.1,ENST00000473779.1,ENST00000413728.2,ENST00000338458.4,ENST00000465659.1,ENST00000468727.1,ENST00000481422.1,ENST00000496106.1,ENST00000296315.3,ENST00000497267.1	chr3	56787531:56787594:56789008:56789179:56807736:56807844,	56789009	56789179	56789105	56789105	Frame_Shift_Del	G	-	p.S100fs
COAD	TCGA-AA-3511-01	ARHGEF37	ENST00000333677.6	chr5	148998504:148998605:148999916:149000027:149001295:149001430,	148999917	149000027	148999995	148999996	Frame_Shift_Del	AG	-	p.324_325del
COAD	TCGA-A6-6650-01	ARHGEF9	ENST00000437457.2,ENST00000253401.6,ENST00000374878.1,ENST00000374872.1,ENST00000374870.4	chrX	62863875:62863928:62875373:62875617:62893917:62894018,62863875:62863928:62875373:62875617:62885765:62885897,	62875374	62875617	62875433	62875434	Frame_Shift_Ins	-	T	p.I312fs
COAD	TCGA-DM-A0XD-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056337	27056338	Frame_Shift_Del	CT	-	p.444_445del
COAD	TCGA-A6-5665-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088681	27088682	Frame_Shift_Ins	-	C	p.S764fs
COAD	TCGA-AM-5820-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097622	27097622	Frame_Shift_Del	A	-	p.N1070fs
COAD	TCGA-A6-6781-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097751	27097751	Frame_Shift_Del	C	-	p.P1113fs
COAD	TCGA-A6-6780-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101139	27101139	Frame_Shift_Del	A	-	p.Q1474fs
COAD	TCGA-CM-6674-01	ARID1B	ENST00000346085.5	chr6	157150360:157150555:157192747:157192786:157222509:157222659,	157192748	157192786	157192750	157192751	Frame_Shift_Del	CT	-	p.580_580del
COAD	TCGA-CM-6171-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405960	157405960	Frame_Shift_Del	C	-	p.G721fs
COAD	TCGA-F4-6570-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230626	46230626	Frame_Shift_Del	T	-	p.I292fs
COAD	TCGA-A6-5661-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831406	58831406	Frame_Shift_Del	A	-	p.E866fs
COAD	TCGA-G4-6320-01	ARID4A	ENST00000355431.3	chr14	58832741:58832948:58833600:58833747:58838603:58838678,	58833601	58833747	58833719	58833719	Frame_Shift_Del	A	-	p.R1214fs
COAD	TCGA-AA-3713-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3,ENST00000491632.1,ENST00000444620.1	chr1	235344899:235346108:235357327:235357526:235359345:235359430,	235357328	235357526	235357476	235357477	Frame_Shift_Ins	-	T	p.N573fs
COAD	TCGA-CM-6171-01	ARMC3	ENST00000484642.1,ENST00000376528.4,ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23257234:23257418:23270268:23270421:23270523:23270537,	23270269	23270421	23270323	23270323	Frame_Shift_Del	T	-	p.L324fs
COAD	TCGA-A6-6780-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823493	114823494	Frame_Shift_Ins	-	T	p.K579fs
COAD	TCGA-CK-5916-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823493	114823494	Frame_Shift_Ins	-	T	p.K579fs
COAD	TCGA-CM-6162-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823937	114823938	Frame_Shift_Ins	-	T	p.N431fs
COAD	TCGA-CM-4746-01	ARSK	ENST00000504873.1,ENST00000513814.1,ENST00000380009.4	chr5	94918619:94918902:94922265:94922437:94927104:94927329,	94922266	94922437	94922346	94922346	Frame_Shift_Del	A	-	p.T260fs
COAD	TCGA-AZ-6598-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660980	3660980	Frame_Shift_Del	G	-	p.H227fs
COAD	TCGA-AZ-4315-01	ASB15	ENST00000447789.1,ENST00000540573.1,ENST00000451558.1,ENST00000434204.1,ENST00000275699.3,ENST00000451215.1	chr7	123256417:123256549:123257632:123257791:123264622:123264868,	123257633	123257791	123257756	123257757	Frame_Shift_Ins	-	A	p.T139fs
COAD	TCGA-AD-6889-01	ASB2	ENST00000555507.1,ENST00000555019.1,ENST00000315988.4	chr14	94404064:94404197:94405453:94406018:94413694:94413866,	94405454	94406018	94405856	94405857	Frame_Shift_Del	GC	-	p.357_358del
COAD	TCGA-G4-6586-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408481	155408481	Frame_Shift_Del	T	-	p.N1822fs
COAD	TCGA-AU-6004-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448996	155448996	Frame_Shift_Del	T	-	p.K1222fs
COAD	TCGA-AZ-4615-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448996	155448996	Frame_Shift_Del	T	-	p.K1222fs
COAD	TCGA-A6-6781-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449753	155449753	Frame_Shift_Del	T	-	p.I970fs
COAD	TCGA-A6-6653-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450527	155450527	Frame_Shift_Del	T	-	p.R712fs
COAD	TCGA-A6-6780-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190531265	190531266	Frame_Shift_Ins	-	T	p.D136fs
COAD	TCGA-AD-6964-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190531840	190531840	Frame_Shift_Del	G	-	p.S327fs
COAD	TCGA-AA-3663-01	ASPH	ENST00000445642.3,ENST00000519678.1,ENST00000518068.1,ENST00000518441.1,ENST00000522835.1,ENST00000519234.1,ENST00000517903.1,ENST00000356457.5,ENST00000517847.2	chr8	62531536:62531578:62546241:62546286:62550505:62550545,62496502:62496588:62546241:62546286:62550505:62550545,62538699:62538839:62546241:62546286:62550505:62550545,	62546242	62546286	62546272	62546273	Frame_Shift_Ins	-	A	p.P268fs
COAD	TCGA-F4-6856-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070523	197070524	Frame_Shift_Ins	-	T	p.Q2620fs
COAD	TCGA-CA-6716-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072765	197072766	Frame_Shift_Ins	-	A	p.L1872fs
COAD	TCGA-A6-6653-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073231	197073232	Frame_Shift_Ins	-	T	p.I1717fs
COAD	TCGA-G4-6628-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073231	197073232	Frame_Shift_Ins	-	T	p.I1717fs
COAD	TCGA-AD-6895-01	ASPM	ENST00000294732.7,ENST00000367409.4	chr1	197104225:197104372:197108896:197109001:197111460:197112940,	197108897	197109001	197108910	197108910	Frame_Shift_Del	T	-	p.P672fs
COAD	TCGA-AZ-6598-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743643	130743643	Frame_Shift_Del	T	-	p.T170fs
COAD	TCGA-CK-5916-01	ATAD1	ENST00000328142.3,ENST00000541004.1,ENST00000495903.1,ENST00000308448.7	chr10	89550066:89550187:89552413:89552512:89574194:89574369,	89552414	89552512	89552478	89552478	Frame_Shift_Del	T	-	p.N66fs
COAD	TCGA-G4-6628-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384892	124384893	Frame_Shift_Ins	-	T	p.E119fs
COAD	TCGA-AZ-6598-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384893	124384893	Frame_Shift_Del	T	-	p.E119fs
COAD	TCGA-AU-6004-01	ATAD2B	ENST00000238789.5,ENST00000366438.2	chr2	24080284:24080373:24086250:24086425:24087678:24087794,	24086251	24086425	24086326	24086326	Frame_Shift_Del	A	-	p.M469fs
COAD	TCGA-F4-6570-01	ATAD2B	ENST00000238789.5,ENST00000366438.2	chr2	24080284:24080373:24086250:24086425:24087678:24087794,	24086251	24086425	24086326	24086326	Frame_Shift_Del	A	-	p.M469fs
COAD	TCGA-AZ-6601-01	ATAD2B	ENST00000238789.5,ENST00000439915.1	chr2	24092539:24092631:24098698:24098774:24103508:24103625,	24098699	24098774	24098756	24098756	Frame_Shift_Del	T	-	p.K307fs
COAD	TCGA-AA-3663-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220776	29220776	Frame_Shift_Del	A	-	p.G1635fs
COAD	TCGA-AA-3663-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610714	30610714	Frame_Shift_Del	C	-	p.C298fs
COAD	TCGA-AY-6197-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610714	30610714	Frame_Shift_Del	C	-	p.C298fs
COAD	TCGA-AY-6197-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30610544:30610788:30613671:30613751:30613843:30613886,	30613672	30613751	30613720	30613721	Frame_Shift_Ins	-	G	p.H327fs
COAD	TCGA-G4-6628-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30610544:30610788:30613671:30613751:30613843:30613886,	30613672	30613751	30613720	30613721	Frame_Shift_Ins	-	G	p.H327fs
COAD	TCGA-D5-6540-01	ATF5	ENST00000423777.2,ENST00000595125.1	chr19	50432499:50432657:50433988:50434285:50435678:50435865,	50433989	50434285	50434211	50434211	Frame_Shift_Del	C	-	p.A35fs
COAD	TCGA-F4-6856-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577801	14577802	Frame_Shift_Ins	-	A	p.E318fs
COAD	TCGA-D5-6927-01	ATG10	ENST00000508814.1	chr5	81474308:81474406:81548380:81548478:81549132:81549248,81474308:81474406:81548380:81548478:81571963:81572116,	81548381	81548478	81548405	81548405	Frame_Shift_Del	T	-	p.P159fs
COAD	TCGA-D5-6928-01	ATG14	ENST00000247178.5	chr14	55848679:55848909:55852576:55852814:55857628:55857710,	55852577	55852814	55852688	55852688	Frame_Shift_Del	T	-	p.K179fs
COAD	TCGA-G4-6298-01	ATG2A	ENST00000421419.2,ENST00000418259.1,ENST00000377264.3	chr11	64662017:64662681:64662761:64662914:64663933:64664088,	64662762	64662914	64662771	64662772	Frame_Shift_Del	TG	-	p.1857_1858del
COAD	TCGA-AM-5820-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108163345:108163520:108164039:108164204:108165653:108165786,	108164040	108164204	108164164	108164164	Frame_Shift_Del	A	-	p.Q1579fs
COAD	TCGA-A6-6781-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262564	25262564	Frame_Shift_Del	G	-	p.V112fs
COAD	TCGA-A6-6781-01	ATP13A3	ENST00000256031.4,ENST00000439040.1,ENST00000429136.1	chr3	194134542:194134568:194140607:194140696:194146070:194146099,	194140608	194140696	194140668	194140669	Frame_Shift_Ins	-	A	p.L1114fs
COAD	TCGA-G4-6320-01	ATP13A3	ENST00000256031.4,ENST00000439040.1,ENST00000429136.1	chr3	194134542:194134568:194140607:194140696:194146070:194146099,	194140608	194140696	194140669	194140669	Frame_Shift_Del	A	-	p.L1114fs
COAD	TCGA-A6-5661-01	ATP13A3	ENST00000256031.4,ENST00000439040.1,ENST00000429136.1	chr3	194134542:194134568:194140607:194140696:194146070:194146099,	194140608	194140696	194140681	194140682	Frame_Shift_Ins	-	A	p.S1110fs
COAD	TCGA-AD-6889-01	ATP13A3	ENST00000256031.4,ENST00000439040.1,ENST00000429136.1	chr3	194134542:194134568:194140607:194140696:194146070:194146099,	194140608	194140696	194140689	194140689	Frame_Shift_Del	A	-	p.V1108fs
COAD	TCGA-AZ-6598-01	ATP1A1	ENST00000488733.1,ENST00000295598.5	chr1	116915890:116916145:116926635:116926746:116927404:116927464,	116926636	116926746	116926693	116926693	Frame_Shift_Del	A	-	p.G23fs
COAD	TCGA-G4-6588-01	ATP1A1	ENST00000369494.1,ENST00000537345.1,ENST00000418797.1,ENST00000295598.5,ENST00000369496.4	chr1	116927404:116927464:116929909:116930113:116930752:116930777,	116929910	116930113	116930018	116930018	Frame_Shift_Del	G	-	p.F97fs
COAD	TCGA-AZ-4615-01	ATP1B3	ENST00000286371.3,ENST00000466678.1	chr3	141635396:141635416:141640818:141640905:141644372:141644485,141634811:141634862:141640818:141640905:141644372:141644485,	141640819	141640905	141640894	141640894	Frame_Shift_Del	A	-	p.G219fs
COAD	TCGA-AM-5820-01	ATP2B2	ENST00000383800.4,ENST00000397077.1,ENST00000452124.1,ENST00000480680.2,ENST00000360273.2,ENST00000460129.1,ENST00000352432.4,ENST00000343816.4	chr3	10442636:10442762:10443774:10444032:10452301:10452359,	10443775	10444032	10443967	10443967	Frame_Shift_Del	C	-	p.A155fs
COAD	TCGA-CM-4746-01	ATP2B3	ENST00000359149.3,ENST00000370181.2,ENST00000370186.1	chrX	152830378:152830561:152835060:152835214:152845435:152846027,	152835061	152835214	152835163	152835164	Frame_Shift_Ins	-	C	p.T1149fs
COAD	TCGA-AZ-6598-01	ATP2C2	ENST00000567892.1	chr16	84488423:84488590:84492725:84492794:84494259:84494407,	84492726	84492794	84492752	84492752	Frame_Shift_Del	T	-	p.I725fs
COAD	TCGA-AD-6889-01	ATP6V0D2	ENST00000285393.3	chr8	87111132:87111337:87125937:87126109:87151685:87151864,	87125938	87126109	87126033	87126033	Frame_Shift_Del	A	-	p.R75fs
COAD	TCGA-AD-6888-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42626552:42626651:42627630:42627730:42629011:42629126,	42627631	42627730	42627645	42627645	Frame_Shift_Del	T	-	p.I84fs
COAD	TCGA-A6-5665-01	ATP8B3	ENST00000531925.1,ENST00000310127.6,ENST00000539485.1,ENST00000525591.1	chr19	1784817:1784945:1785157:1785296:1785467:1785707,	1785158	1785296	1785177	1785177	Frame_Shift_Del	G	-	p.T1135fs
COAD	TCGA-G4-6309-01	ATP9B	ENST00000426216.2,ENST00000585674.1,ENST00000307671.7,ENST00000490210.2	chr18	76966976:76967012:76973961:76974038:77013380:77013541,	76973962	76974038	76974028	76974029	Frame_Shift_Ins	-	A	p.P366fs
COAD	TCGA-D5-6927-01	ATRIP	ENST00000346691.4,ENST00000454733.1,ENST00000320211.3,ENST00000357105.6,ENST00000424906.1,ENST00000412052.1	chr3	48500761:48500853:48501185:48501315:48501508:48501561,	48501186	48501315	48501288	48501288	Frame_Shift_Del	C	-	p.T343fs
COAD	TCGA-A6-5665-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76919038	76919038	Frame_Shift_Del	T	-	p.N1280fs
COAD	TCGA-CM-5861-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938229	76938230	Frame_Shift_Ins	-	T	p.R802fs
COAD	TCGA-F4-6856-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327684	16327684	Frame_Shift_Del	G	-	p.S287fs
COAD	TCGA-AU-6004-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327823	16327823	Frame_Shift_Del	G	-	p.P240fs
COAD	TCGA-AA-3492-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
COAD	TCGA-AA-3492-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
COAD	TCGA-AA-3492-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
COAD	TCGA-AZ-6598-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
COAD	TCGA-AZ-6598-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
COAD	TCGA-AZ-6598-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
COAD	TCGA-CM-5861-01	ATXN7L3	ENST00000454077.2	chr17	42273167:42273196:42273401:42273468:42273763:42273786,	42273402	42273468	42273403	42273404	Frame_Shift_Ins	-	T	p.N181fs
COAD	TCGA-CM-5861-01	ATXN7L3	ENST00000389384.4,ENST00000587097.1	chr17	42273167:42273196:42273401:42273447:42273763:42273786,	42273402	42273447	42273403	42273404	Frame_Shift_Ins	-	T	p.N181fs
COAD	TCGA-AA-3492-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347089	347089	Frame_Shift_Del	T	-	p.K641fs
COAD	TCGA-AA-3492-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396962	396962	Frame_Shift_Del	G	-	p.R22fs
COAD	TCGA-AZ-6598-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.G88fs
COAD	TCGA-CM-5861-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.G88fs
COAD	TCGA-G4-6309-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.G88fs
COAD	TCGA-A6-6780-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025103	58025103	Frame_Shift_Del	C	-	p.G88fs
COAD	TCGA-AA-3663-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025103	58025103	Frame_Shift_Del	C	-	p.G88fs
COAD	TCGA-G4-6586-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025103	58025103	Frame_Shift_Del	C	-	p.G88fs
COAD	TCGA-AU-6004-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
COAD	TCGA-AU-6004-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
COAD	TCGA-AZ-6598-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
COAD	TCGA-AZ-6598-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
COAD	TCGA-CK-5916-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
COAD	TCGA-CK-5916-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
COAD	TCGA-D5-6928-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
COAD	TCGA-D5-6928-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
COAD	TCGA-AD-6964-01	B4GALT1	ENST00000379731.4	chr9	33115988:33116111:33120416:33120604:33135186:33135422,	33120417	33120604	33120463	33120463	Frame_Shift_Del	A	-	p.S264fs
COAD	TCGA-CK-5916-01	BACE1	ENST00000528053.1,ENST00000504995.1,ENST00000392937.6,ENST00000510915.1,ENST00000313005.6	chr11	117163786:117163904:117164586:117164724:117165846:117166063,	117164587	117164724	117164628	117164628	Frame_Shift_Del	G	-	p.L222fs
COAD	TCGA-CK-5916-01	BACE1	ENST00000513780.1,ENST00000510630.1	chr11	117163786:117163904:117164586:117164649:117165846:117166063,	117164587	117164649	117164628	117164628	Frame_Shift_Del	G	-	p.L222fs
COAD	TCGA-AA-3663-01	BAG6	ENST00000375976.4,ENST00000404765.2,ENST00000375964.6,ENST00000211379.5,ENST00000441793.1,ENST00000439687.2,ENST00000362049.6	chr6	31608421:31608481:31608568:31608715:31608880:31609005,	31608569	31608715	31608571	31608571	Frame_Shift_Del	G	-	p.Q942fs
COAD	TCGA-CK-5916-01	BAG6	ENST00000375976.4,ENST00000456622.1	chr6	31617286:31617404:31619432:31619553:31620023:31620135,	31619433	31619553	31619438	31619438	Frame_Shift_Del	C	-	p.A35fs
COAD	TCGA-A6-5665-01	BAIAP2	ENST00000392411.3,ENST00000572329.1,ENST00000572498.1,ENST00000321300.6,ENST00000575712.1,ENST00000435091.3,ENST00000576225.1,ENST00000321280.7,ENST00000416299.2,ENST00000575245.1,ENST00000428708.2	chr17	79079877:79079946:79080544:79080707:79082274:79082309,	79080545	79080707	79080609	79080609	Frame_Shift_Del	C	-	p.P467fs
COAD	TCGA-AA-3663-01	BAIAP2L1	ENST00000005260.8	chr7	97923385:97923423:97933507:97933688:97935750:97935825,	97933508	97933688	97933623	97933623	Frame_Shift_Del	G	-	p.P436fs
COAD	TCGA-F4-6570-01	BAIAP2L1	ENST00000005260.8	chr7	97923385:97923423:97933507:97933688:97935750:97935825,	97933508	97933688	97933623	97933623	Frame_Shift_Del	G	-	p.P436fs
COAD	TCGA-G4-6586-01	BAIAP2L1	ENST00000005260.8	chr7	97923385:97923423:97933507:97933688:97935750:97935825,	97933508	97933688	97933623	97933623	Frame_Shift_Del	G	-	p.P436fs
COAD	TCGA-G4-6588-01	BAIAP2L1	ENST00000005260.8	chr7	97923385:97923423:97933507:97933688:97935750:97935825,	97933508	97933688	97933623	97933623	Frame_Shift_Del	G	-	p.P436fs
COAD	TCGA-F4-6570-01	BAIAP2L1	ENST00000005260.8	chr7	97937000:97937208:97939756:97939904:97941408:97941576,	97939757	97939904	97939854	97939854	Frame_Shift_Del	G	-	p.A287fs
COAD	TCGA-AD-6964-01	BAIAP2L1	ENST00000462558.1	chr7	97984353:97984440:97991668:97991744:98030113:98030380,	97991669	97991744	97991694	97991694	Frame_Shift_Del	C	-	p.K35fs
COAD	TCGA-AU-6004-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951317	102951317	Frame_Shift_Del	A	-	p.K598fs
COAD	TCGA-AD-6895-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645975	215645975	Frame_Shift_Del	T	-	p.K208fs
COAD	TCGA-AD-6889-01	BAX	ENST00000354470.3	chr19	49458185:49458219:49458804:49458856:49458943:49459090,49458185:49458219:49458804:49458856:49459454:49459573,	49458805	49458856	49458854	49458854	Frame_Shift_Del	G	-	p.Q28fs
COAD	TCGA-AD-6889-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458854	49458854	Frame_Shift_Del	G	-	p.Q28fs
COAD	TCGA-A6-6781-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
COAD	TCGA-A6-6781-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
COAD	TCGA-AY-6197-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
COAD	TCGA-AY-6197-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
COAD	TCGA-AZ-4615-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
COAD	TCGA-AZ-4615-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
COAD	TCGA-CM-5861-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35227909:35228052:35230962:35231429:35233912:35234139,	35230963	35231429	35230980	35230980	Frame_Shift_Del	C	-	p.R1377fs
COAD	TCGA-AZ-6598-01	BAZ1A	ENST00000382422.2,ENST00000360310.1	chr14	35255331:35255427:35261980:35262127:35263954:35264093,	35261981	35262127	35262064	35262064	Frame_Shift_Del	A	-	p.F476fs
COAD	TCGA-AZ-6598-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35295218:35295362:35331249:35331528:35343697:35343868,	35331250	35331528	35331423	35331423	Frame_Shift_Del	T	-	p.A74fs
COAD	TCGA-AD-6889-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35295218:35295362:35331249:35331528:35343697:35343868,	35331250	35331528	35331519	35331519	Frame_Shift_Del	A	-	p.E42fs
COAD	TCGA-G4-6588-01	BAZ2A	ENST00000551812.1,ENST00000549884.1	chr12	57007736:57007922:57008797:57009391:57011178:57011316,	57008798	57009391	57009177	57009178	Frame_Shift_Ins	-	C	p.G119fs
COAD	TCGA-AD-5900-01	BBS2	ENST00000565781.1,ENST00000569192.1,ENST00000245157.5	chr16	56530878:56530991:56531654:56531792:56532348:56532480,	56531655	56531792	56531727	56531727	Frame_Shift_Del	A	-	p.A576fs
COAD	TCGA-A6-5661-01	BCAP29	ENST00000379119.2,ENST00000445771.2,ENST00000465919.1,ENST00000379117.2,ENST00000005259.4,ENST00000442065.1,ENST00000457837.1,ENST00000479917.1,ENST00000491150.1,ENST00000421217.1	chr7	107224363:107224427:107234399:107234550:107236311:107236366,	107234400	107234550	107234540	107234540	Frame_Shift_Del	T	-	p.L111fs
COAD	TCGA-AA-3663-01	BCAP29	ENST00000379119.2,ENST00000445771.2,ENST00000465919.1,ENST00000379117.2,ENST00000005259.4,ENST00000442065.1,ENST00000457837.1,ENST00000479917.1,ENST00000491150.1,ENST00000421217.1	chr7	107224363:107224427:107234399:107234550:107236311:107236366,	107234400	107234550	107234540	107234540	Frame_Shift_Del	T	-	p.L111fs
COAD	TCGA-AZ-4615-01	BCAS1	ENST00000371440.3,ENST00000371435.2,ENST00000395961.3	chr20	52674623:52674693:52675185:52675262:52686971:52687030,	52675186	52675262	52675232	52675233	Frame_Shift_Ins	-	G	p.Q9fs
COAD	TCGA-AD-6889-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547794	165547795	Frame_Shift_Ins	-	T	p.T343fs
COAD	TCGA-AD-6964-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548196	165548196	Frame_Shift_Del	T	-	p.N209fs
COAD	TCGA-AA-3663-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
COAD	TCGA-AA-3663-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
COAD	TCGA-AY-6197-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
COAD	TCGA-AY-6197-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
COAD	TCGA-CK-5916-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
COAD	TCGA-CK-5916-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
COAD	TCGA-D5-6928-01	BCL7C	ENST00000574418.1	chr16	30900180:30900266:30903906:30904035:30904532:30904611,	30903907	30904035	30903991	30903991	Frame_Shift_Del	G	-	p.Q120fs
COAD	TCGA-D5-6927-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770651	118770652	Frame_Shift_Ins	-	G	p.P1127fs
COAD	TCGA-G4-6628-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770651	118770652	Frame_Shift_Ins	-	G	p.P1127fs
COAD	TCGA-AA-3663-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770652	Frame_Shift_Del	G	-	p.P1127fs
COAD	TCGA-AD-5900-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770652	Frame_Shift_Del	G	-	p.P1127fs
COAD	TCGA-F4-6856-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70754405:70754682:70757643:70757753:70759884:70759944,	70757644	70757753	70757681	70757682	Frame_Shift_Del	AG	-	p.176_176del
COAD	TCGA-AU-6004-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766232	70766233	Frame_Shift_Ins	-	T	p.M310fs
COAD	TCGA-AD-6895-01	BEST3	ENST00000331471.4,ENST00000553096.1,ENST00000330891.5	chr12	70066664:70066745:70070695:70070848:70070959:70071037,	70070696	70070848	70070790	70070790	Frame_Shift_Del	A	-	p.L258fs
COAD	TCGA-AA-3697-01	BHLHE41	ENST00000242728.4	chr12	26276562:26276674:26277004:26277112:26277451:26277515,	26277005	26277112	26277070	26277074	Frame_Shift_Del	TTCTT	-	p.56_57del
COAD	TCGA-G4-6628-01	BHMT	ENST00000524080.1,ENST00000274353.5	chr5	78421868:78422051:78423577:78423806:78426755:78427307,	78423578	78423806	78423642	78423642	Frame_Shift_Del	G	-	p.L291fs
COAD	TCGA-AA-3492-01	BICC1	ENST00000263103.1,ENST00000373886.3	chr10	60558158:60558320:60558815:60559012:60559953:60560086,	60558816	60559012	60558977	60558977	Frame_Shift_Del	A	-	p.G563fs
COAD	TCGA-AY-6197-01	BIN1	ENST00000351659.3,ENST00000357970.3,ENST00000316724.5	chr2	127821508:127821594:127825738:127825831:127826499:127826607,	127825739	127825831	127825801	127825801	Frame_Shift_Del	G	-	p.Q184fs
COAD	TCGA-A6-5665-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685392	51685393	Frame_Shift_Ins	-	G	p.T500fs
COAD	TCGA-AA-3492-01	BIRC6	ENST00000421745.2	chr2	32602655:32602837:32605220:32605358:32613817:32614011,	32605221	32605358	32605312	32605313	Frame_Shift_Ins	-	A	p.L200fs
COAD	TCGA-D5-6927-01	BIRC6	ENST00000421745.2	chr2	32688261:32688449:32689576:32689891:32690132:32690232,	32689577	32689891	32689838	32689838	Frame_Shift_Del	C	-	p.D1734fs
COAD	TCGA-G4-6588-01	BIRC6	ENST00000421745.2	chr2	32737999:32738221:32740056:32740837:32743320:32743464,	32740057	32740837	32740238	32740238	Frame_Shift_Del	A	-	p.S3583fs
COAD	TCGA-CK-5916-01	BLMH	ENST00000584603.2,ENST00000580709.1,ENST00000261714.6	chr17	28614841:28614965:28616390:28616500:28618328:28618526,	28616391	28616500	28616398	28616399	Frame_Shift_Ins	-	A	p.W105fs
COAD	TCGA-AA-3663-01	BMF	ENST00000354670.4,ENST00000397573.1,ENST00000561360.1,ENST00000561282.1	chr15	40383991:40384089:40396380:40396541:40397995:40398287,	40396381	40396541	40396471	40396471	Frame_Shift_Del	G	-	p.E122fs
COAD	TCGA-AA-3663-01	BMF	ENST00000431415.3	chr15	40383991:40384089:40396443:40396541:40397995:40398287,	40396444	40396541	40396471	40396471	Frame_Shift_Del	G	-	p.E122fs
COAD	TCGA-CM-6674-01	BMP1	ENST00000520970.1	chr8	22059315:22059441:22064815:22065029:22066957:22067208,	22064816	22065029	22064898	22064898	Frame_Shift_Del	C	-	p.A815fs
COAD	TCGA-A6-5665-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383610	203383610	Frame_Shift_Del	A	-	p.V229fs
COAD	TCGA-AU-6004-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203395516:203395677:203397307:203397455:203407033:203407170,	203397308	203397455	203397430	203397431	Frame_Shift_Del	TA	-	p.417_417del
COAD	TCGA-AD-6889-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203397307:203397455:203407033:203407170:203417438:203417611,	203407034	203407170	203407071	203407072	Frame_Shift_Del	AG	-	p.438_438del
COAD	TCGA-D5-6930-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203397307:203397455:203407033:203407170:203417438:203417611,	203407034	203407170	203407080	203407080	Frame_Shift_Del	A	-	p.G441fs
COAD	TCGA-AA-3492-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420002	203420002	Frame_Shift_Del	A	-	p.P538fs
COAD	TCGA-AD-6889-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
COAD	TCGA-AU-6004-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
COAD	TCGA-AY-6197-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
COAD	TCGA-AZ-4615-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
COAD	TCGA-CM-6674-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
COAD	TCGA-F4-6570-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
COAD	TCGA-G4-6304-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
COAD	TCGA-A6-6781-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436375	16436375	Frame_Shift_Del	G	-	p.P606fs
COAD	TCGA-AA-3663-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436375	16436375	Frame_Shift_Del	G	-	p.P606fs
COAD	TCGA-F4-6570-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16437203	16437203	Frame_Shift_Del	G	-	p.P330fs
COAD	TCGA-F4-6570-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41245332	41245333	Frame_Shift_Ins	-	TA	p.K739fs
COAD	TCGA-A6-5665-01	BRF1	ENST00000546417.1,ENST00000552127.1,ENST00000546474.1,ENST00000551787.1,ENST00000547562.1,ENST00000379932.4,ENST00000327359.3,ENST00000440513.3,ENST00000379937.2,ENST00000392557.4,ENST00000446501.2,ENST00000549655.1	chr14	105692459:105692498:105692587:105692627:105692970:105693097,	105692588	105692627	105692603	105692604	Frame_Shift_Ins	-	T	p.L76fs
COAD	TCGA-AD-5900-01	BRPF3	ENST00000357641.6,ENST00000441730.2,ENST00000534400.1,ENST00000441123.1	chr6	36179224:36179337:36181656:36182163:36185693:36185787,	36181657	36182163	36181729	36181729	Frame_Shift_Del	C	-	p.S852fs
COAD	TCGA-CM-5861-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40581920:40582073:40582711:40582855:40584591:40584633,	40582712	40582855	40582836	40582837	Frame_Shift_Ins	-	T	p.S1307fs
COAD	TCGA-CM-5861-01	BRWD1	ENST00000473813.1	chr21	40581920:40582073:40582791:40582855:40584591:40584633,	40582792	40582855	40582836	40582837	Frame_Shift_Ins	-	T	p.S1307fs
COAD	TCGA-AZ-4615-01	BST1	ENST00000265016.4,ENST00000514989.1,ENST00000505785.1,ENST00000514445.1,ENST00000382346.3	chr4	15716950:15716984:15717329:15717422:15720529:15720616,	15717330	15717422	15717368	15717368	Frame_Shift_Del	A	-	p.E217fs
COAD	TCGA-A6-6780-01	BTBD11	ENST00000280758.5,ENST00000357167.4,ENST00000490090.2	chr12	108010865:108010959:108011077:108011213:108011934:108012155,	108011078	108011213	108011162	108011162	Frame_Shift_Del	C	-	p.T727fs
COAD	TCGA-CM-4743-01	BTBD1	ENST00000379403.2	chr15	83686712:83686977:83687458:83687605:83689426:83689514,83686712:83686977:83687458:83687605:83698887:83699080,	83687459	83687605	83687586	83687586	Frame_Shift_Del	T	-	p.K388fs
COAD	TCGA-AZ-4615-01	BTBD16	ENST00000368994.2,ENST00000260723.4	chr10	124058518:124058649:124066703:124066823:124088994:124089086,	124066704	124066823	124066813	124066813	Frame_Shift_Del	T	-	p.T300fs
COAD	TCGA-F4-6703-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000553975.1,ENST00000393170.2,ENST00000334746.5	chr14	93717808:93717998:93719992:93720136:93723540:93723701,	93719993	93720136	93720048	93720048	Frame_Shift_Del	T	-	p.N566fs
COAD	TCGA-AM-5820-01	BTBD7	ENST00000554565.1	chr14	93727947:93728023:93730130:93730339:93760203:93760274,93727947:93728023:93730130:93730339:93799165:93799367,	93730131	93730339	93730184	93730184	Frame_Shift_Del	A	-	p.Y440fs
COAD	TCGA-AU-6004-01	BTN2A1	ENST00000429381.1,ENST00000312541.5,ENST00000469185.1,ENST00000377600.2,ENST00000541522.1	chr6	26463471:26463753:26465412:26465634:26466180:26466201,	26465413	26465634	26465523	26465524	Frame_Shift_Ins	-	A	p.E275fs
COAD	TCGA-CM-4747-01	BTN2A2	ENST00000483410.1,ENST00000352867.2,ENST00000467485.1	chr6	26383370:26383409:26388240:26388522:26390232:26390365,26385370:26385590:26388240:26388522:26390232:26390365,26384019:26384143:26388240:26388522:26390232:26390365,	26388241	26388522	26388304	26388314	Frame_Shift_Del	GCATATCTGGA	-	p.169_172del
COAD	TCGA-A6-6653-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374580	180374580	Frame_Shift_Del	T	-	p.L122fs
COAD	TCGA-A6-6653-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374580	180374580	Frame_Shift_Del	T	-	p.L122fs
COAD	TCGA-D5-6930-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374580	180374580	Frame_Shift_Del	T	-	p.L122fs
COAD	TCGA-D5-6930-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374580	180374580	Frame_Shift_Del	T	-	p.L122fs
COAD	TCGA-A6-6780-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310573	103310573	Frame_Shift_Del	C	-	p.E565fs
COAD	TCGA-D5-6930-01	BUB3	ENST00000368858.5,ENST00000407911.2,ENST00000538238.1,ENST00000368865.4	chr10	124915173:124915243:124917244:124917396:124919922:124920081,	124917245	124917396	124917380	124917381	Frame_Shift_Del	TC	-	p.134_134del
COAD	TCGA-CM-4746-01	BZW1	ENST00000447069.1,ENST00000452790.2,ENST00000409600.1,ENST00000450637.1,ENST00000409226.1,ENST00000452206.1,ENST00000410110.2,ENST00000419090.1	chr2	201677930:201678004:201680063:201680240:201680389:201680484,	201680064	201680240	201680103	201680103	Frame_Shift_Del	G	-	p.C39fs
COAD	TCGA-F4-6570-01	BZW2	ENST00000407633.1,ENST00000437745.1,ENST00000415365.1,ENST00000405202.1,ENST00000433922.2,ENST00000436868.1,ENST00000258761.3	chr7	16736539:16736686:16737672:16737811:16744171:16744287,	16737673	16737811	16737717	16737718	Frame_Shift_Del	AG	-	p.338_338del
COAD	TCGA-AZ-4315-01	C10orf90	ENST00000544758.1,ENST00000488181.1	chr10	128193442:128193654:128202416:128202508:128335133:128335206,	128202417	128202508	128202460	128202460	Frame_Shift_Del	T	-	p.N24fs
COAD	TCGA-AU-6004-01	C12orf66	ENST00000398055.3	chr12	64587626:64588438:64609457:64609743:64615782:64616043,	64609458	64609743	64609469	64609469	Frame_Shift_Del	T	-	p.Y171fs
COAD	TCGA-AD-6964-01	C17orf58	ENST00000334461.7	chr17	65987245:65988219:65989016:65989351:65989539:65989640,	65989017	65989351	65989239	65989239	Frame_Shift_Del	G	-	p.D9fs
COAD	TCGA-G4-6588-01	C17orf58	ENST00000334461.7	chr17	65987245:65988219:65989016:65989351:65989539:65989640,	65989017	65989351	65989239	65989239	Frame_Shift_Del	G	-	p.D9fs
COAD	TCGA-G4-6628-01	C17orf80	ENST00000359042.2,ENST00000535032.2,ENST00000426147.2	chr17	71229364:71229464:71238382:71238490:71239034:71239142,71233047:71233134:71238382:71238490:71239034:71239142,	71238383	71238490	71238427	71238427	Frame_Shift_Del	C	-	p.E519fs
COAD	TCGA-AZ-6601-01	C19orf47	ENST00000392035.2,ENST00000357884.4,ENST00000582783.1	chr19	40829912:40829983:40832240:40832393:40834319:40834457,	40832241	40832393	40832280	40832280	Frame_Shift_Del	G	-	p.R185fs
COAD	TCGA-AA-3663-01	C1orf162	ENST00000369718.3	chr1	112019423:112019489:112019955:112020050:112020272:112020397,112019423:112019489:112019955:112020050:112020347:112020397,	112019956	112020050	112019956	112019957	Frame_Shift_Ins	-	A	p.N36fs
COAD	TCGA-AY-6197-01	C1orf94	ENST00000373374.3,ENST00000488417.1	chr1	34667684:34667860:34673757:34673835:34677810:34678007,	34673758	34673835	34673801	34673802	Frame_Shift_Ins	-	T	p.A497fs
COAD	TCGA-F4-6703-01	C21orf58	ENST00000417060.1,ENST00000491666.1,ENST00000291691.7	chr21	47731369:47731481:47734629:47734794:47735387:47735461,	47734630	47734794	47734699	47734699	Frame_Shift_Del	G	-	p.T181fs
COAD	TCGA-F4-6703-01	C21orf58	ENST00000397679.1,ENST00000397680.1,ENST00000397682.3,ENST00000397683.1	chr21	47731369:47731481:47734629:47734963:47735387:47735461,	47734630	47734963	47734699	47734699	Frame_Shift_Del	G	-	p.T181fs
COAD	TCGA-CK-5913-01	C2CD3	ENST00000313663.7,ENST00000415191.2,ENST00000334126.7	chr11	73825428:73825638:73829272:73829427:73834032:73834180,	73829273	73829427	73829363	73829364	Frame_Shift_Ins	-	T	p.I477fs
COAD	TCGA-A6-6781-01	C2orf49	ENST00000258457.2	chr2	105956039:105956206:105959304:105959680:105961771:105962053,	105959305	105959680	105959423	105959423	Frame_Shift_Del	C	-	p.P128fs
COAD	TCGA-AZ-6598-01	C4A	ENST00000428956.2,ENST00000498271.1,ENST00000537134.1	chr6	31951614:31951711:31951849:31951955:31952052:31952175,	31951850	31951955	31951874	31951874	Frame_Shift_Del	G	-	p.Q277fs
COAD	TCGA-AZ-4615-01	C4orf47	ENST00000511138.1,ENST00000511581.1,ENST00000378850.4	chr4	186350543:186350665:186353135:186353355:186357199:186357285,	186353136	186353355	186353306	186353306	Frame_Shift_Del	A	-	p.A90fs
COAD	TCGA-AA-3663-01	C4orf47	ENST00000511138.1,ENST00000511581.1,ENST00000378850.4	chr4	186350543:186350665:186353135:186353355:186357199:186357285,	186353136	186353355	186353348	186353348	Frame_Shift_Del	A	-	p.E104fs
COAD	TCGA-D5-6930-01	C6orf118	ENST00000230301.8	chr6	165713852:165713975:165715057:165715785:165723050:165723096,	165715058	165715785	165715613	165715613	Frame_Shift_Del	G	-	p.N67fs
COAD	TCGA-A6-6781-01	C7orf31	ENST00000443822.1,ENST00000283905.3,ENST00000409280.1	chr7	25198119:25198149:25200807:25200879:25207907:25208084,	25200808	25200879	25200833	25200833	Frame_Shift_Del	T	-	p.S120fs
COAD	TCGA-A6-5665-01	C7orf50	ENST00000397100.2,ENST00000357429.6,ENST00000491163.1,ENST00000397098.3	chr7	1040105:1040187:1049585:1049779:1166892:1167022,	1049586	1049779	1049694	1049694	Frame_Shift_Del	T	-	p.K72fs
COAD	TCGA-AZ-6598-01	C7orf57	ENST00000435376.1,ENST00000430738.1,ENST00000420324.1,ENST00000348904.3,ENST00000539619.1	chr7	48083077:48083186:48086056:48086213:48089476:48089574,	48086057	48086213	48086205	48086205	Frame_Shift_Del	A	-	p.E166fs
COAD	TCGA-CM-4743-01	C9orf135	ENST00000480564.1,ENST00000527647.1	chr9	72435875:72435947:72459432:72459541:72471470:72471589,	72459433	72459541	72459490	72459491	Frame_Shift_Ins	-	A	p.V70fs
COAD	TCGA-AD-6895-01	CA14	ENST00000607652.1,ENST00000369111.4,ENST00000483993.2	chr1	150233976:150234037:150234556:150234699:150234923:150235019,	150234557	150234699	150234562	150234563	Frame_Shift_Del	CT	-	p.87_88del
COAD	TCGA-CM-6674-01	CA14	ENST00000607652.1,ENST00000369111.4,ENST00000483993.2	chr1	150233976:150234037:150234556:150234699:150234923:150235019,	150234557	150234699	150234655	150234655	Frame_Shift_Del	G	-	p.P118fs
COAD	TCGA-A6-5665-01	CA1	ENST00000517590.1,ENST00000517618.1,ENST00000523858.1,ENST00000521846.1,ENST00000523022.1,ENST00000523953.1,ENST00000542576.1,ENST00000522814.1,ENST00000522579.1,ENST00000256119.5,ENST00000431316.1,ENST00000432364.2,ENST00000522662.1	chr8	86249230:86249292:86250480:86250678:86253827:86253888,	86250481	86250678	86250523	86250524	Frame_Shift_Ins	-	C	p.H65fs
COAD	TCGA-F4-6570-01	CACNA1A	ENST00000360228.5,ENST00000573710.2	chr19	13394080:13394210:13395881:13396020:13397316:13397780,	13395882	13396020	13395982	13395983	Frame_Shift_Ins	-	T	p.E1198fs
COAD	TCGA-DM-A1DA-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766889	53766892	Frame_Shift_Del	GCCG	-	p.840_841del
COAD	TCGA-D5-6928-01	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49079387:49079595:49081222:49081448:49082370:49082531,	49081223	49081448	49081322	49081322	Frame_Shift_Del	C	-	p.G539fs
COAD	TCGA-AZ-4615-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54537518:54537681:54596826:54596958:54603821:54603882,	54596827	54596958	54596940	54596940	Frame_Shift_Del	T	-	p.G219fs
COAD	TCGA-G4-6588-01	CACNA2D3	ENST00000471363.1	chr3	54798244:54798378:54871185:54871257:54872594:54872675,	54871186	54871257	54871203	54871203	Frame_Shift_Del	C	-	p.G472fs
COAD	TCGA-AA-3492-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000462699.1,ENST00000334010.7,ENST00000449022.2	chr7	121965530:121965635:121985627:121985735:122000841:122000874,	121985628	121985735	121985686	121985686	Frame_Shift_Del	T	-	p.N1189fs
COAD	TCGA-CK-5913-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000402834.4	chr12	121708700:121708748:121711858:121712388:121735341:121735860,121708700:121708748:121711858:121712388:121734440:121734489,	121711859	121712388	121712264	121712265	Frame_Shift_Ins	-	C	p.G22fs
COAD	TCGA-CM-4743-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000402834.4	chr12	121708700:121708748:121711858:121712388:121735341:121735860,121708700:121708748:121711858:121712388:121734440:121734489,	121711859	121712388	121712281	121712281	Frame_Shift_Del	G	-	p.Q17fs
COAD	TCGA-F4-6570-01	CAMKMT	ENST00000378494.3,ENST00000477830.1	chr2	44931421:44931482:44933425:44933480:44934537:44934601,	44933426	44933480	44933448	44933448	Frame_Shift_Del	G	-	p.L153fs
COAD	TCGA-AZ-6598-01	CAMSAP3	ENST00000446248.2,ENST00000160298.4	chr19	7675585:7675679:7675762:7675817:7675980:7676054,	7675763	7675817	7675769	7675769	Frame_Shift_Del	C	-	p.S334fs
COAD	TCGA-A6-5665-01	CAMTA1	ENST00000467404.2	chr1	6845611:6845635:6885151:6885270:6931816:6931900,6867047:6867148:6885151:6885270:6931816:6931900,	6885152	6885270	6885198	6885199	Frame_Shift_Ins	-	A	p.P54fs
COAD	TCGA-CM-6171-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875737	4875738	Frame_Shift_Ins	-	G	p.P889fs
COAD	TCGA-AA-3663-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
COAD	TCGA-AU-6004-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
COAD	TCGA-CM-4743-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
COAD	TCGA-G4-6586-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
COAD	TCGA-AD-6889-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883808	4883808	Frame_Shift_Del	G	-	p.P293fs
COAD	TCGA-D5-6928-01	CAPN10	ENST00000391984.2,ENST00000270361.11,ENST00000494738.1,ENST00000404753.3	chr2	241535869:241535938:241536097:241536359:241537304:241537394,	241536098	241536359	241536202	241536203	Frame_Shift_Ins	-	G	p.A529fs
COAD	TCGA-AA-3713-01	CAPN11	ENST00000542245.1,ENST00000398776.1	chr6	44140676:44140810:44140954:44141123:44143804:44143888,	44140955	44141123	44140983	44140983	Frame_Shift_Del	G	-	p.S230fs
COAD	TCGA-CK-5916-01	CAPN3	ENST00000397204.4	chr15	42695938:42695975:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42701500:42701578,	42698124	42698141	42698129	42698130	Frame_Shift_Ins	-	A	p.K84fs
COAD	TCGA-A6-6781-01	CAPRIN2	ENST00000308433.5,ENST00000454014.2,ENST00000548676.1,ENST00000537553.1	chr12	30883172:30883216:30884276:30884444:30887901:30887948,	30884277	30884444	30884313	30884313	Frame_Shift_Del	T	-	p.T342fs
COAD	TCGA-CM-6171-01	CARS2	ENST00000481787.2,ENST00000257347.4,ENST00000545506.1,ENST00000535615.1,ENST00000487253.2,ENST00000543487.1,ENST00000540006.1,ENST00000535398.1	chr13	111299447:111299586:111303380:111303447:111315797:111315865,	111303381	111303447	111303424	111303424	Frame_Shift_Del	G	-	p.D338fs
COAD	TCGA-CM-6171-01	CARS2	ENST00000535516.1	chr13	111299447:111299586:111302983:111303447:111315797:111315865,	111302984	111303447	111303424	111303424	Frame_Shift_Del	G	-	p.D338fs
COAD	TCGA-A6-5665-01	CASD1	ENST00000297273.4	chr7	94174856:94175013:94176407:94176487:94178844:94178946,	94176408	94176487	94176469	94176469	Frame_Shift_Del	T	-	p.C565fs
COAD	TCGA-F4-6808-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878041	Frame_Shift_Del	T	-	p.T10fs
COAD	TCGA-CM-6171-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878042	Frame_Shift_Del	TT	-	p.10_10del
COAD	TCGA-AD-5900-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Frame_Shift_Del	A	-	p.L123fs
COAD	TCGA-AM-5820-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Frame_Shift_Del	A	-	p.L123fs
COAD	TCGA-F4-6570-01	CASR	ENST00000490131.1,ENST00000498619.1,ENST00000296154.5	chr3	121973177:121973221:121975927:121976234:121980374:121981259,	121975928	121976234	121976092	121976092	Frame_Shift_Del	A	-	p.Q117fs
COAD	TCGA-D5-6540-01	CATSPERG	ENST00000412458.2,ENST00000410018.1,ENST00000215069.4,ENST00000409235.3,ENST00000471517.1,ENST00000312265.5	chr19	38855700:38855757:38857795:38857952:38858148:38858212,	38857796	38857952	38857828	38857828	Frame_Shift_Del	C	-	p.C882fs
COAD	TCGA-AA-3663-01	CBX1	ENST00000495350.1,ENST00000225603.4,ENST00000402583.1	chr17	46153362:46153540:46154226:46154403:46178629:46178649,	46154227	46154403	46154355	46154355	Frame_Shift_Del	T	-	p.Q5fs
COAD	TCGA-A6-6780-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245989	26245989	Frame_Shift_Del	A	-	p.Q9fs
COAD	TCGA-AD-6889-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245989	26245989	Frame_Shift_Del	A	-	p.Q9fs
COAD	TCGA-G4-6586-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245989	26245989	Frame_Shift_Del	A	-	p.Q9fs
COAD	TCGA-A6-5661-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245999	26245999	Frame_Shift_Del	A	-	p.G12fs
COAD	TCGA-A6-5659-01	CC2D1B	ENST00000450942.2,ENST00000284376.3,ENST00000460261.1,ENST00000438021.1	chr1	52823197:52823370:52823452:52823570:52824002:52824133,	52823453	52823570	52823501	52823501	Frame_Shift_Del	G	-	p.L517fs
COAD	TCGA-A6-5659-01	CC2D1B	ENST00000438831.1,ENST00000371586.2	chr1	52823197:52823370:52823452:52823588:52824002:52824133,	52823453	52823588	52823501	52823501	Frame_Shift_Del	G	-	p.L517fs
COAD	TCGA-AZ-4615-01	CCAR1	ENST00000539250.1,ENST00000536012.1,ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543225.1	chr10	70520763:70520949:70525644:70525836:70530962:70531058,	70525645	70525836	70525749	70525749	Frame_Shift_Del	A	-	p.A737fs
COAD	TCGA-AA-3713-01	CCDC102B	ENST00000360242.5,ENST00000319445.6,ENST00000584156.1	chr18	66541905:66542022:66564455:66564665:66678170:66678341,	66564456	66564665	66564655	66564655	Frame_Shift_Del	A	-	p.E418fs
COAD	TCGA-CK-5916-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114607287	114607287	Frame_Shift_Del	T	-	p.R319fs
COAD	TCGA-G4-6628-01	CCDC122	ENST00000444614.3	chr13	44410487:44411565:44432916:44433033:44433807:44434206,	44432917	44433033	44432947	44432948	Frame_Shift_Ins	-	T	p.K214fs
COAD	TCGA-AD-6964-01	CCDC125	ENST00000511257.1,ENST00000396499.1,ENST00000396496.2	chr5	68581163:68581294:68588014:68588189:68590619:68590727,	68588015	68588189	68588101	68588101	Frame_Shift_Del	T	-	p.N338fs
COAD	TCGA-F4-6570-01	CCDC150	ENST00000389175.4,ENST00000471546.1	chr2	197504438:197504502:197511064:197511228:197521356:197521577,	197511065	197511228	197511222	197511222	Frame_Shift_Del	A	-	p.E57fs
COAD	TCGA-CM-6171-01	CCDC171	ENST00000535968.1,ENST00000380701.3,ENST00000297641.3	chr9	15594038:15594170:15623264:15623411:15657124:15657217,	15623265	15623411	15623341	15623341	Frame_Shift_Del	T	-	p.L251fs
COAD	TCGA-G4-6588-01	CCDC28A	ENST00000332797.6	chr6	139100958:139101122:139106363:139106518:139109502:139109525,	139106364	139106518	139106476	139106476	Frame_Shift_Del	A	-	p.R235fs
COAD	TCGA-CM-4743-01	CCDC30	ENST00000509712.1,ENST00000477155.1	chr1	43000559:43000660:43002146:43002272:43011080:43011250,	43002147	43002272	43002200	43002203	Frame_Shift_Del	AGAG	-	p.15_16del
COAD	TCGA-CM-4746-01	CCDC47	ENST00000403162.3,ENST00000225726.5,ENST00000582252.1	chr17	61841375:61841550:61842099:61842207:61843271:61843554,	61842100	61842207	61842124	61842125	Frame_Shift_Ins	-	T	p.N116fs
COAD	TCGA-CM-6171-01	CCDC57	ENST00000327026.3	chr17	80130513:80130736:80136349:80136481:80141649:80141808,	80136350	80136481	80136355	80136355	Frame_Shift_Del	C	-	p.A501fs
COAD	TCGA-AA-3663-01	CCDC58	ENST00000291458.5,ENST00000479899.1,ENST00000479414.1	chr3	122081814:122081874:122087022:122087169:122090521:122090577,	122087023	122087169	122087096	122087096	Frame_Shift_Del	T	-	p.N84fs
COAD	TCGA-A6-5665-01	CCDC60	ENST00000327554.2	chr12	119926563:119926671:119937882:119937973:119942873:119943108,	119937883	119937973	119937910	119937911	Frame_Shift_Ins	-	A	p.I195fs
COAD	TCGA-CK-5913-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1	chr3	56597711:56598153:56600621:56600787:56600977:56601081,	56600622	56600787	56600689	56600690	Frame_Shift_Ins	-	A	p.F204fs
COAD	TCGA-CK-5913-01	CCDC66	ENST00000434467.1,ENST00000341455.6	chr3	56597711:56598153:56600621:56600768:56600977:56601081,	56600622	56600768	56600689	56600690	Frame_Shift_Ins	-	A	p.F204fs
COAD	TCGA-D5-6540-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1	chr3	56597711:56598153:56600621:56600787:56600977:56601081,	56600622	56600787	56600689	56600690	Frame_Shift_Ins	-	A	p.F204fs
COAD	TCGA-D5-6540-01	CCDC66	ENST00000434467.1,ENST00000341455.6	chr3	56597711:56598153:56600621:56600768:56600977:56601081,	56600622	56600768	56600689	56600690	Frame_Shift_Ins	-	A	p.F204fs
COAD	TCGA-AM-5820-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290249	132290249	Frame_Shift_Del	C	-	p.H191fs
COAD	TCGA-AZ-6598-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117368	96117368	Frame_Shift_Del	T	-	p.R182fs
COAD	TCGA-AA-3663-01	CCDC83	ENST00000526729.1,ENST00000376067.1	chr11	85584273:85584338:85593555:85593718:85606335:85606427,	85593556	85593718	85593677	85593677	Frame_Shift_Del	A	-	p.E101fs
COAD	TCGA-A6-5665-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6	chr2	55529007:55529208:55530204:55530288:55535944:55536159,	55530205	55530288	55530260	55530261	Frame_Shift_Ins	-	A	p.L1471fs
COAD	TCGA-G4-6628-01	CCDC88A	ENST00000430086.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55582847:55582887:55589443:55589584:55591085:55591169,	55589444	55589584	55589495	55589496	Frame_Shift_Ins	-	T	p.N192fs
COAD	TCGA-A6-5665-01	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64111928	64111928	Frame_Shift_Del	T	-	p.A638fs
COAD	TCGA-AD-6889-01	CCDC90B	ENST00000528149.1,ENST00000455220.2,ENST00000525503.1,ENST00000529689.1,ENST00000529611.1,ENST00000527025.1,ENST00000529745.1,ENST00000529856.1,ENST00000534753.1,ENST00000529312.1,ENST00000260054.4	chr11	82972970:82973008:82984689:82984743:82984835:82984907,82976957:82977021:82984689:82984743:82984835:82984907,	82984690	82984743	82984690	82984691	Frame_Shift_Ins	-	T	p.K198fs
COAD	TCGA-D5-6928-01	CCDC91	ENST00000306172.5,ENST00000540401.1,ENST00000536442.1,ENST00000540794.1,ENST00000381259.1,ENST00000545737.1,ENST00000535520.1,ENST00000545336.1	chr12	28544236:28544344:28603093:28603186:28603282:28603351,	28603094	28603186	28603137	28603138	Frame_Shift_Ins	-	A	p.L269fs
COAD	TCGA-AD-6889-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548632	19548632	Frame_Shift_Del	A	-	p.V547fs
COAD	TCGA-AD-6964-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652399	55652399	Frame_Shift_Del	T	-	p.F525fs
COAD	TCGA-A6-6781-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652706	55652706	Frame_Shift_Del	T	-	p.K422fs
COAD	TCGA-CM-4743-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.L93fs
COAD	TCGA-AD-5900-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078661	117078662	Frame_Shift_Ins	-	T	p.I185fs
COAD	TCGA-AD-6889-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078661	117078662	Frame_Shift_Ins	-	T	p.I185fs
COAD	TCGA-AZ-6598-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078661	117078662	Frame_Shift_Ins	-	T	p.I185fs
COAD	TCGA-CM-5861-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078662	117078662	Frame_Shift_Del	T	-	p.I185fs
COAD	TCGA-AA-3663-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078679	117078679	Frame_Shift_Del	T	-	p.N179fs
COAD	TCGA-AD-6895-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087038	117087039	Frame_Shift_Del	AC	-	p.87_87del
COAD	TCGA-CK-5916-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087042	117087043	Frame_Shift_Del	AG	-	p.85_86del
COAD	TCGA-F4-6570-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087061	117087061	Frame_Shift_Del	T	-	p.N79fs
COAD	TCGA-AD-6890-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274159	80274160	Frame_Shift_Ins	-	T	p.A175fs
COAD	TCGA-AD-6890-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274162	80274162	Frame_Shift_Del	G	-	p.P174fs
COAD	TCGA-CM-4743-01	CD79A	ENST00000221972.3	chr19	42383059:42383359:42383604:42383723:42384736:42384769,	42383605	42383723	42383610	42383610	Frame_Shift_Del	C	-	p.P90fs
COAD	TCGA-CM-6162-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
COAD	TCGA-D5-6928-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
COAD	TCGA-CK-5916-01	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964710	100964710	Frame_Shift_Del	C	-	p.S549fs
COAD	TCGA-D5-6928-01	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964719	100964719	Frame_Shift_Del	C	-	p.G552fs
COAD	TCGA-AD-6889-01	CDC23	ENST00000394886.2	chr5	137534114:137534212:137534293:137534471:137536795:137536928,	137534294	137534471	137534426	137534427	Frame_Shift_Ins	-	A	p.L234fs
COAD	TCGA-CM-6674-01	CDC25B	ENST00000340833.4,ENST00000439880.2,ENST00000245960.5,ENST00000344256.6,ENST00000467519.1,ENST00000379598.5	chr20	3784050:3784184:3785215:3785327:3785467:3785705,	3785216	3785327	3785292	3785292	Frame_Shift_Del	A	-	p.L508fs
COAD	TCGA-AY-6197-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219763	45219763	Frame_Shift_Del	T	-	p.I410fs
COAD	TCGA-AA-3663-01	CDC45	ENST00000455750.1,ENST00000483431.1,ENST00000487669.1,ENST00000438587.1,ENST00000263201.1,ENST00000437685.2,ENST00000491520.1,ENST00000407835.1	chr22	19467680:19467740:19468475:19468568:19470212:19470345,	19468476	19468568	19468524	19468524	Frame_Shift_Del	G	-	p.S53fs
COAD	TCGA-D5-6930-01	CDC73	ENST00000367435.3	chr1	193110979:193111196:193116996:193117095:193119433:193119512,	193116997	193117095	193117012	193117013	Frame_Shift_Ins	-	T	p.I249fs
COAD	TCGA-A6-5665-01	CDH12	ENST00000504376.2,ENST00000382254.1,ENST00000517378.1	chr5	21842269:21842437:21854779:21854899:21975199:21975494,	21854780	21854899	21854856	21854857	Frame_Shift_Ins	-	G	p.P190fs
COAD	TCGA-A6-6653-01	CDH13	ENST00000565636.1,ENST00000268613.10,ENST00000566620.1,ENST00000446376.2,ENST00000431540.3	chr16	82891966:82892078:83065614:83065823:83158989:83159106,	83065615	83065823	83065794	83065794	Frame_Shift_Del	G	-	p.V112fs
COAD	TCGA-D5-6540-01	CDH17	ENST00000027335.3,ENST00000450165.2,ENST00000441892.2	chr8	95143103:95143220:95158155:95158395:95160971:95161102,	95158156	95158395	95158391	95158391	Frame_Shift_Del	C	-	p.S645fs
COAD	TCGA-A6-5665-01	CDH22	ENST00000537909.1,ENST00000372262.3	chr20	44803025:44803716:44806584:44806836:44815226:44815344,	44806585	44806836	44806765	44806765	Frame_Shift_Del	T	-	p.I579fs
COAD	TCGA-G4-6586-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618899	618900	Frame_Shift_Ins	-	G	p.G554fs
COAD	TCGA-G4-6309-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37627766:37628016:37646809:37646986:37649003:37649143,	37646810	37646986	37646922	37646922	Frame_Shift_Del	C	-	p.S681fs
COAD	TCGA-D5-6928-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37667781:37667883:37671983:37672061:37673692:37673809,	37671984	37672061	37672019	37672019	Frame_Shift_Del	T	-	p.I935fs
COAD	TCGA-A6-6781-01	CDK13	ENST00000181839.4,ENST00000340829.5	chr7	40102424:40102526:40102621:40102699:40117603:40117720,	40102622	40102699	40102647	40102647	Frame_Shift_Del	A	-	p.T909fs
COAD	TCGA-A6-5665-01	CDK14	ENST00000487145.1,ENST00000406263.1,ENST00000380050.3,ENST00000431029.1,ENST00000436577.2,ENST00000265741.3	chr7	90528605:90528668:90546915:90547039:90585011:90585108,	90546916	90547039	90547014	90547014	Frame_Shift_Del	G	-	p.T249fs
COAD	TCGA-AM-5820-01	CDK16	ENST00000517426.1,ENST00000523344.1,ENST00000518022.1,ENST00000357227.4,ENST00000457458.2,ENST00000276052.6	chrX	47085363:47085426:47085677:47085801:47085981:47086102,	47085678	47085801	47085676	47085690	Frame_Shift_Del	CCAGCTGTTCCTGTT	-	p.339_342del
COAD	TCGA-AD-5900-01	CDK5RAP2	ENST00000483412.1,ENST00000479584.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000360190.4,ENST00000349780.4	chr9	123202067:123202250:123205897:123206020:123210172:123210350,	123205898	123206020	123206011	123206011	Frame_Shift_Del	G	-	p.P1012fs
COAD	TCGA-AZ-4615-01	CDK9	ENST00000373264.4,ENST00000373265.2	chr9	130550492:130550664:130550822:130550971:130551456:130551643,	130550823	130550971	130550838	130550839	Frame_Shift_Ins	-	C	p.G207fs
COAD	TCGA-CK-5913-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76521430:76521524:76522118:76522420:76523260:76523396,	76522119	76522420	76522337	76522337	Frame_Shift_Del	T	-	p.G369fs
COAD	TCGA-AA-3663-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76521430:76521524:76522118:76522420:76523260:76523396,	76522119	76522420	76522346	76522346	Frame_Shift_Del	T	-	p.A366fs
COAD	TCGA-DM-A28K-01	CDYL	ENST00000397588.3	chr6	4776675:4777041:4891946:4892613:4935748:4936005,	4891947	4892613	4891976	4891977	Frame_Shift_Ins	-	A	p.N18fs
COAD	TCGA-AD-6889-01	CELF4	ENST00000588597.1	chr18	34833817:34833901:34844636:34844717:34846495:34846556,34839143:34839227:34844636:34844717:34846495:34846556,	34844637	34844717	34844652	34844652	Frame_Shift_Del	G	-	p.Q402fs
COAD	TCGA-AD-6889-01	CELF4	ENST00000361795.5,ENST00000412753.1,ENST00000603232.1,ENST00000420428.2,ENST00000591282.1,ENST00000590112.1,ENST00000589386.1,ENST00000601019.1	chr18	34833817:34833901:34844636:34844720:34846495:34846556,34839143:34839227:34844636:34844720:34846495:34846556,	34844637	34844720	34844652	34844652	Frame_Shift_Del	G	-	p.Q402fs
COAD	TCGA-A6-6780-01	CEP164	ENST00000278935.3,ENST00000533675.1	chr11	117233119:117233254:117234144:117234222:117241795:117242182,	117234145	117234222	117234192	117234193	Frame_Shift_Ins	-	G	p.I245fs
COAD	TCGA-A6-5665-01	CEP192	ENST00000507254.2,ENST00000511820.2,ENST00000589993.1,ENST00000510237.1,ENST00000506447.1,ENST00000513432.1,ENST00000430049.2,ENST00000325971.8	chr18	13068850:13068990:13069087:13069180:13069736:13069855,	13069088	13069180	13069141	13069142	Frame_Shift_Ins	-	A	p.L1672fs
COAD	TCGA-AA-3713-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34064273:34064420:34065695:34065926:34067055:34067249,	34065696	34065926	34065919	34065922	Frame_Shift_Del	TAAG	-	p.696_697del
COAD	TCGA-A6-5665-01	CEP72	ENST00000264935.5	chr5	624585:624694:633883:634062:635486:635699,	633884	634062	633893	633893	Frame_Shift_Del	C	-	p.H174fs
COAD	TCGA-CM-6674-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118887049	118887049	Frame_Shift_Del	T	-	p.R222fs
COAD	TCGA-AA-3663-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118887294	118887294	Frame_Shift_Del	C	-	p.E140fs
COAD	TCGA-DM-A1D9-01	CEPT1	ENST00000357172.4,ENST00000460443.1,ENST00000498239.1,ENST00000478042.1,ENST00000545121.1	chr1	111702001:111702149:111703776:111703918:111717500:111717585,	111703777	111703918	111703835	111703836	Frame_Shift_Ins	-	T	p.M182fs
COAD	TCGA-G4-6586-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701580	89701581	Frame_Shift_Ins	-	T	p.A64fs
COAD	TCGA-G4-6586-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701580	89701581	Frame_Shift_Ins	-	T	p.A64fs
COAD	TCGA-CM-6162-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
COAD	TCGA-CM-6162-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
COAD	TCGA-G4-6628-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
COAD	TCGA-G4-6628-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
COAD	TCGA-CK-5916-01	CETP	ENST00000200676.3,ENST00000566128.1	chr16	57005903:57005995:57007242:57007422:57009012:57009063,	57007243	57007422	57007284	57007284	Frame_Shift_Del	C	-	p.L264fs
COAD	TCGA-CK-5913-01	CFH	ENST00000439155.2,ENST00000367429.4	chr1	196645118:196645195:196646605:196646797:196648752:196648923,	196646606	196646797	196646642	196646643	Frame_Shift_Ins	-	A	p.G155fs
COAD	TCGA-D5-6540-01	CHD2	ENST00000557381.1,ENST00000556930.1,ENST00000420239.2,ENST00000536619.1,ENST00000556270.1,ENST00000394196.4	chr15	93472259:93472321:93480747:93480855:93482807:93482948,	93480748	93480855	93480818	93480819	Frame_Shift_Ins	-	A	p.Q172fs
COAD	TCGA-AA-3492-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7797444:7797583:7797732:7797926:7798234:7798468,	7797733	7797926	7797756	7797756	Frame_Shift_Del	G	-	p.A366fs
COAD	TCGA-AA-3713-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798702	7798703	Frame_Shift_Ins	-	G	p.W517fs
COAD	TCGA-A6-6653-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798703	7798703	Frame_Shift_Del	G	-	p.W517fs
COAD	TCGA-A6-6653-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P537fs
COAD	TCGA-AY-6197-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P537fs
COAD	TCGA-AZ-4615-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P537fs
COAD	TCGA-AZ-4615-01	CHD7	ENST00000525508.1,ENST00000423902.2	chr8	61655590:61655656:61693558:61693989:61707544:61707686,	61693559	61693989	61693840	61693840	Frame_Shift_Del	A	-	p.A649fs
COAD	TCGA-AZ-6598-01	CHD7	ENST00000525508.1,ENST00000423902.2	chr8	61655590:61655656:61693558:61693989:61707544:61707686,	61693559	61693989	61693840	61693840	Frame_Shift_Del	A	-	p.A649fs
COAD	TCGA-D5-6928-01	CHEK2	ENST00000425190.2,ENST00000439200.1,ENST00000382580.2,ENST00000348295.3,ENST00000328354.6,ENST00000433728.1,ENST00000402731.1,ENST00000405598.1,ENST00000382566.1,ENST00000404276.1	chr22	29107896:29108005:29120964:29121112:29121230:29121236,29115382:29115473:29120964:29121112:29121230:29121236,	29120965	29121112	29121095	29121096	Frame_Shift_Ins	-	T	p.N197fs
COAD	TCGA-DM-A28F-01	CHFR	ENST00000443047.2	chr12	133438132:133438220:133448870:133448980:133454140:133454240,	133448871	133448980	133448924	133448925	Frame_Shift_Del	AA	-	p.97_97del
COAD	TCGA-G4-6588-01	CHMP7	ENST00000523091.1	chr8	23115842:23115962:23116244:23116343:23117656:23117799,	23116245	23116343	23116246	23116246	Frame_Shift_Del	T	-	p.V321fs
COAD	TCGA-G4-6628-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108337	102108338	Frame_Shift_Ins	-	T	p.W159fs
COAD	TCGA-CM-4743-01	CHRD	ENST00000204604.1,ENST00000460627.1,ENST00000448472.1,ENST00000450923.1,ENST00000545352.1,ENST00000420973.1,ENST00000348986.3	chr3	184104838:184104895:184105161:184105265:184105718:184105821,	184105162	184105265	184105223	184105224	Frame_Shift_Ins	-	C	p.V803fs
COAD	TCGA-A6-5665-01	CHRNA1	ENST00000348749.5,ENST00000409219.1,ENST00000409323.1	chr2	175618946:175619142:175622293:175622403:175624058:175624103,	175622294	175622403	175622346	175622346	Frame_Shift_Del	T	-	p.I123fs
COAD	TCGA-AA-3663-01	CHRNA5	ENST00000559554.1	chr15	78857912:78858167:78873152:78873304:78878986:78879031,	78873153	78873304	78873247	78873247	Frame_Shift_Del	C	-	p.H67fs
COAD	TCGA-D5-6929-01	CHRNB1	ENST00000576360.1	chr17	7351897:7352107:7357762:7357839:7358602:7358775,	7357763	7357839	7357816	7357817	Frame_Shift_Ins	-	T	p.Q341fs
COAD	TCGA-D5-6929-01	CHRNB1	ENST00000573209.1,ENST00000536404.2,ENST00000306071.2	chr17	7351897:7352107:7357615:7357839:7358602:7358775,	7357616	7357839	7357816	7357817	Frame_Shift_Ins	-	T	p.Q341fs
COAD	TCGA-AZ-4615-01	CLCN3	ENST00000515420.1	chr4	170616781:170616843:170618339:170618430:170618511:170618885,	170618340	170618430	170618379	170618379	Frame_Shift_Del	T	-	p.S352fs
COAD	TCGA-AZ-6598-01	CLCNKA	ENST00000491433.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4	chr1	16354512:16354614:16355255:16355340:16355620:16355794,	16355256	16355340	16355263	16355263	Frame_Shift_Del	G	-	p.P325fs
COAD	TCGA-AZ-6598-01	CLCNKA	ENST00000464764.1	chr1	16354512:16354614:16355214:16355340:16355620:16355794,	16355215	16355340	16355263	16355263	Frame_Shift_Del	G	-	p.P325fs
COAD	TCGA-AD-5900-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16377972:16378042:16378204:16378315:16378692:16378906,	16378205	16378315	16378297	16378297	Frame_Shift_Del	G	-	p.P463fs
COAD	TCGA-F4-6856-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122794308:122794429:122801295:122801402:122803778:122803895,	122801296	122801402	122801318	122801318	Frame_Shift_Del	T	-	p.M1151fs
COAD	TCGA-CM-5861-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122837272:122837333:122838999:122839103:122839661:122839859,	122839000	122839103	122839052	122839053	Frame_Shift_Ins	-	T	p.A419fs
COAD	TCGA-G4-6628-01	CLIP3	ENST00000593074.1,ENST00000360535.4	chr19	36508749:36508893:36509799:36509928:36510072:36510208,	36509800	36509928	36509879	36509879	Frame_Shift_Del	G	-	p.S369fs
COAD	TCGA-AA-3492-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669231	95669231	Frame_Shift_Del	G	-	p.H819fs
COAD	TCGA-AY-6197-01	CLN3	ENST00000565778.1,ENST00000568558.1,ENST00000357806.7,ENST00000565140.1,ENST00000567495.1,ENST00000568076.1,ENST00000566057.1,ENST00000565047.1	chr16	28493946:28493993:28495326:28495439:28498776:28498862,	28495327	28495439	28495377	28495378	Frame_Shift_Del	CT	-	p.247_247del
COAD	TCGA-A6-5661-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336953	56336954	Frame_Shift_Ins	-	A	p.L123fs
COAD	TCGA-CM-6162-01	CLPP	ENST00000596149.1,ENST00000597326.1,ENST00000245816.4,ENST00000596070.1	chr19	6362456:6362553:6366268:6366374:6368548:6368556,6364462:6364650:6366268:6366374:6368548:6368556,	6366269	6366374	6366357	6366358	Frame_Shift_Del	AG	-	p.215_215del
COAD	TCGA-A6-5665-01	CLTC	ENST00000579456.1,ENST00000269122.3,ENST00000393043.1	chr17	57759678:57759789:57759989:57760154:57760267:57760375,	57759990	57760154	57760012	57760012	Frame_Shift_Del	A	-	p.E1208fs
COAD	TCGA-D5-6540-01	CMC2	ENST00000565514.1	chr16	81014434:81014484:81015410:81015482:81030918:81030977,81010013:81010076:81015410:81015482:81040338:81040444,81010013:81010076:81015410:81015482:81030918:81030977,81010013:81010076:81015410:81015482:81025358:81025560,81014434:81014484:81015410:81015482:81040338:81040444,	81015411	81015482	81015461	81015462	Frame_Shift_Ins	-	A	p.G35fs
COAD	TCGA-D5-6928-01	CNN3	ENST00000370206.4,ENST00000545882.1,ENST00000538964.1,ENST00000415017.1,ENST00000487539.1	chr1	95367224:95367341:95367676:95367814:95368677:95368744,	95367677	95367814	95367781	95367782	Frame_Shift_Ins	-	A	p.Q94fs
COAD	TCGA-AA-3492-01	CNNM1	ENST00000370528.3,ENST00000356713.4,ENST00000446890.1	chr10	101124711:101124759:101136811:101136975:101147576:101147760,	101136812	101136975	101136883	101136883	Frame_Shift_Del	G	-	p.F749fs
COAD	TCGA-F4-6856-01	CNOT10	ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000416457.1	chr3	32806173:32806301:32811378:32811454:32814948:32815004,	32811379	32811454	32811409	32811409	Frame_Shift_Del	C	-	p.V651fs
COAD	TCGA-D5-6928-01	CNOT7	ENST00000519954.1,ENST00000361272.4,ENST00000523917.1	chr8	17089935:17090046:17092224:17092369:17094720:17094882,	17092225	17092369	17092275	17092276	Frame_Shift_Ins	-	A	p.P190fs
COAD	TCGA-F4-6703-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414121	1414122	Frame_Shift_Ins	-	A	p.L544fs
COAD	TCGA-A6-5665-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1424976:1425092:1427294:1427481:1443116:1443229,	1427295	1427481	1427449	1427450	Frame_Shift_Ins	-	C	p.S891fs
COAD	TCGA-AA-3492-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1424976:1425092:1427294:1427481:1443116:1443229,	1427295	1427481	1427450	1427450	Frame_Shift_Del	C	-	p.S891fs
COAD	TCGA-CM-4743-01	CNTRL	ENST00000373845.2,ENST00000373855.1,ENST00000238341.5,ENST00000373850.1	chr9	123924133:123924249:123924331:123924549:123927220:123927378,	123924332	123924549	123924525	123924525	Frame_Shift_Del	A	-	p.E1800fs
COAD	TCGA-G4-6586-01	COG5	ENST00000347053.3,ENST00000297135.3	chr7	106843008:106844075:106850970:106851050:106851543:106851670,	106850971	106851050	106850992	106850992	Frame_Shift_Del	T	-	p.K816fs
COAD	TCGA-A6-5657-01	COG7	ENST00000307149.5	chr16	23445956:23446039:23453797:23453966:23456368:23456485,	23453798	23453966	23453841	23453842	Frame_Shift_Ins	-	A	p.L187fs
COAD	TCGA-AZ-4315-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474066	103474067	Frame_Shift_Ins	-	C	p.P558fs
COAD	TCGA-G4-6320-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474066	103474067	Frame_Shift_Ins	-	C	p.P558fs
COAD	TCGA-G4-6628-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474066	103474067	Frame_Shift_Ins	-	C	p.P558fs
COAD	TCGA-G4-6309-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.P558fs
COAD	TCGA-AU-6004-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75831017:75831157:75833045:75833120:75833663:75833810,	75833046	75833120	75833072	75833072	Frame_Shift_Del	G	-	p.P1143fs
COAD	TCGA-D5-6540-01	COL12A1	ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75875222:75875495:75884753:75885026:75887378:75887651,	75884754	75885026	75884903	75884903	Frame_Shift_Del	C	-	p.G854fs
COAD	TCGA-AD-5900-01	COL13A1	ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398968.3,ENST00000398973.3,ENST00000398972.3	chr10	71637794:71637821:71640258:71640309:71647211:71647247,71631939:71631966:71640258:71640309:71647211:71647247,71634883:71634919:71640258:71640309:71647211:71647247,	71640259	71640309	71640303	71640303	Frame_Shift_Del	C	-	p.G160fs
COAD	TCGA-A6-5665-01	COL15A1	ENST00000375001.3	chr9	101796830:101796866:101797295:101797436:101797631:101797700,	101797296	101797436	101797335	101797335	Frame_Shift_Del	A	-	p.G706fs
COAD	TCGA-G4-6588-01	COL18A1	ENST00000400337.2	chr21	46825293:46825388:46888155:46888700:46893808:46893895,	46888156	46888700	46888626	46888626	Frame_Shift_Del	C	-	p.S192fs
COAD	TCGA-CM-5861-01	COL18A1	ENST00000359759.4,ENST00000355480.5,ENST00000400337.2	chr21	46899815:46899878:46899983:46900070:46900380:46900434,	46899984	46900070	46900000	46900001	Frame_Shift_Del	GA	-	p.443_443del
COAD	TCGA-A6-6651-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-A6-6780-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-A6-6782-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-AA-3489-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-AA-3511-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-AZ-4615-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-CM-5863-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-CM-5868-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-CM-6169-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-DM-A1D9-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-F4-6806-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
COAD	TCGA-AA-3492-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46924329:46924470:46925047:46925192:46925271:46925345,	46925048	46925192	46925152	46925152	Frame_Shift_Del	C	-	p.G988fs
COAD	TCGA-CM-5861-01	COL20A1	ENST00000435874.1,ENST00000358894.6,ENST00000326996.6,ENST00000422202.1	chr20	61942982:61943100:61943267:61943407:61943771:61943901,	61943268	61943407	61943276	61943277	Frame_Shift_Ins	-	C	p.A558fs
COAD	TCGA-CK-5916-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000358894.6,ENST00000455906.1,ENST00000415763.1,ENST00000326996.6,ENST00000471582.1,ENST00000422202.1	chr20	61956792:61956846:61957019:61957073:61957447:61957501,	61957020	61957073	61957025	61957025	Frame_Shift_Del	C	-	p.H1118fs
COAD	TCGA-A6-6653-01	COL27A1	ENST00000356083.3	chr9	116993358:116993412:116994101:116994146:116997878:116997932,	116994102	116994146	116994119	116994119	Frame_Shift_Del	G	-	p.V846fs
COAD	TCGA-A6-6653-01	COL27A1	ENST00000494090.2	chr9	116993358:116993412:116994101:116994138:116997878:116997932,	116994102	116994138	116994119	116994119	Frame_Shift_Del	G	-	p.V846fs
COAD	TCGA-AZ-6598-01	COL4A1	ENST00000375820.4	chr13	110815809:110815908:110817208:110817337:110818578:110818650,	110817209	110817337	110817255	110817256	Frame_Shift_Ins	-	G	p.P1368fs
COAD	TCGA-AY-6197-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47544564:47544627:47544798:47544834:47545179:47545225,	47544799	47544834	47544810	47544810	Frame_Shift_Del	C	-	p.G582fs
COAD	TCGA-F4-6856-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000491769.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238242092:238242191:238243268:238243532:238244777:238244823,	238243269	238243532	238243453	238243453	Frame_Shift_Del	G	-	p.G2810fs
COAD	TCGA-A6-6781-01	COL6A3	ENST00000472056.1	chr2	238287278:238287878:238289557:238290142:238305369:238305460,238285760:238285987:238289557:238290142:238296224:238296720,238285760:238285987:238289557:238290142:238305369:238305405,	238289558	238290142	238289939	238289939	Frame_Shift_Del	T	-	p.R300fs
COAD	TCGA-CK-5913-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48609935:48609971:48610103:48610172:48610294:48610375,	48610104	48610172	48610111	48610111	Frame_Shift_Del	G	-	p.P2298fs
COAD	TCGA-AZ-6598-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48621467:48621494:48621730:48621808:48621917:48621953,	48621731	48621808	48621801	48621801	Frame_Shift_Del	G	-	p.P1376fs
COAD	TCGA-AA-3713-01	COL9A2	ENST00000482722.1,ENST00000372748.3,ENST00000466267.1	chr1	40768802:40768857:40769201:40769348:40769478:40769511,	40769202	40769348	40769265	40769265	Frame_Shift_Del	G	-	p.G496fs
COAD	TCGA-A6-5661-01	COL9A3	ENST00000343916.3,ENST00000452372.1,ENST00000477612.1,ENST00000489045.1	chr20	61452532:61452568:61452858:61452882:61453108:61453162,	61452859	61452882	61452877	61452877	Frame_Shift_Del	C	-	p.G121fs
COAD	TCGA-F4-6570-01	COX10	ENST00000261643.3	chr17	13977639:13977773:13980051:13980373:14005434:14005559,	13980052	13980373	13980127	13980128	Frame_Shift_Ins	-	A	p.E85fs
COAD	TCGA-AD-6964-01	COX7A2	ENST00000370089.2,ENST00000230459.4,ENST00000370081.2,ENST00000509698.1	chr6	75947665:75947704:75950891:75950981:75953432:75953501,75950019:75950101:75950891:75950981:75953432:75953504,	75950892	75950981	75950900	75950901	Frame_Shift_Ins	-	T	p.L66fs
COAD	TCGA-AD-6964-01	COX7A2	ENST00000459637.2	chr6	75950019:75950101:75950838:75950981:75953432:75953504,	75950839	75950981	75950900	75950901	Frame_Shift_Ins	-	T	p.L66fs
COAD	TCGA-AZ-6598-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17068662:17068725:17081700:17081843:17085896:17086068,17068662:17068725:17081700:17081843:17085906:17086068,	17081701	17081843	17081703	17081703	Frame_Shift_Del	G	-	p.R785fs
COAD	TCGA-AD-6889-01	CPLX1	ENST00000304062.6	chr4	780318:780486:786220:786396:818279:818389,	786221	786396	786363	786363	Frame_Shift_Del	C	-	p.G22fs
COAD	TCGA-A6-5665-01	CPNE3	ENST00000517391.1,ENST00000521271.1,ENST00000198765.4	chr8	87557024:87557066:87558822:87558909:87559938:87559998,	87558823	87558909	87558846	87558847	Frame_Shift_Ins	-	A	p.E252fs
COAD	TCGA-AA-3492-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542775	24542776	Frame_Shift_Ins	-	T	p.Y79fs
COAD	TCGA-AZ-6598-01	CPSF1	ENST00000531727.1,ENST00000349769.3,ENST00000526271.1	chr8	145618913:145619011:145619097:145619253:145619327:145619375,	145619098	145619253	145619158	145619158	Frame_Shift_Del	C	-	p.A1319fs
COAD	TCGA-AD-5900-01	CPSF1	ENST00000349769.3	chr8	145622957:145623094:145623168:145623347:145623691:145623833,	145623169	145623347	145623325	145623325	Frame_Shift_Del	G	-	p.V640fs
COAD	TCGA-G4-6586-01	CPSF7	ENST00000477890.2	chr11	61183576:61183634:61183835:61183991:61187420:61187566,	61183836	61183991	61183883	61183884	Frame_Shift_Ins	-	T	p.S263fs
COAD	TCGA-CM-5868-01	CREB3L3	ENST00000602147.1,ENST00000602257.1,ENST00000078445.2	chr19	4154895:4155024:4156991:4157292:4159660:4159779,	4156992	4157292	4157198	4157199	Frame_Shift_Ins	-	C	p.G121fs
COAD	TCGA-CM-5868-01	CREB3L3	ENST00000595923.1	chr19	4154895:4155024:4156994:4157292:4159660:4159779,	4156995	4157292	4157198	4157199	Frame_Shift_Ins	-	C	p.G121fs
COAD	TCGA-CK-5916-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172513503:172513629:172517317:172518404:172535626:172535821,	172517318	172518404	172518008	172518008	Frame_Shift_Del	A	-	p.E275fs
COAD	TCGA-A6-4105-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315943	50315980	Frame_Shift_Del	CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG	-	p.198_207del
COAD	TCGA-A6-6141-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315943	50315980	Frame_Shift_Del	CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG	-	p.198_207del
COAD	TCGA-AY-6386-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315943	50315980	Frame_Shift_Del	CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG	-	p.198_207del
COAD	TCGA-CM-6169-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315943	50315980	Frame_Shift_Del	CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG	-	p.198_207del
COAD	TCGA-D5-6540-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315943	50315980	Frame_Shift_Del	CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG	-	p.198_207del
COAD	TCGA-D5-6930-01	CRIM1	ENST00000280527.2	chr2	36749234:36749456:36764494:36764689:36771518:36771641,	36764495	36764689	36764628	36764628	Frame_Shift_Del	C	-	p.C854fs
COAD	TCGA-AD-6889-01	CROCC	ENST00000375541.5,ENST00000445545.2,ENST00000492631.1,ENST00000467938.1	chr1	17265403:17265637:17266388:17266588:17270594:17270777,	17266389	17266588	17266539	17266540	Frame_Shift_Ins	-	CC	p.A587fs
COAD	TCGA-A6-5665-01	CRTC1	ENST00000601916.1	chr19	18870817:18871038:18876213:18876338:18886450:18886631,	18876214	18876338	18876263	18876263	Frame_Shift_Del	C	-	p.S312fs
COAD	TCGA-A6-6653-01	CRTC1	ENST00000338797.6,ENST00000594658.1,ENST00000321949.8	chr19	18876213:18876338:18879294:18879603:18882251:18882356,	18879295	18879603	18879553	18879554	Frame_Shift_Ins	-	C	p.S424fs
COAD	TCGA-AD-6964-01	CRTC1	ENST00000338797.6,ENST00000594658.1,ENST00000321949.8	chr19	18876213:18876338:18879294:18879603:18882251:18882356,	18879295	18879603	18879553	18879554	Frame_Shift_Ins	-	C	p.S424fs
COAD	TCGA-G4-6586-01	CRTC1	ENST00000338797.6,ENST00000594658.1,ENST00000321949.8	chr19	18876213:18876338:18879294:18879603:18882251:18882356,	18879295	18879603	18879553	18879554	Frame_Shift_Ins	-	C	p.S424fs
COAD	TCGA-AA-3492-01	CRTC1	ENST00000338797.6,ENST00000594658.1,ENST00000321949.8	chr19	18876213:18876338:18879294:18879603:18882251:18882356,	18879295	18879603	18879554	18879554	Frame_Shift_Del	C	-	p.S424fs
COAD	TCGA-AA-3492-01	CRYZ	ENST00000370871.3,ENST00000340866.5	chr1	75188801:75188954:75190394:75190518:75198639:75198702,	75190395	75190518	75190490	75190491	Frame_Shift_Del	TC	-	p.6_6del
COAD	TCGA-A6-5665-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000483030.1,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115266503:115266623:115267841:115267954:115268831:115268969,	115267842	115267954	115267916	115267917	Frame_Shift_Ins	-	C	p.D529fs
COAD	TCGA-D5-6535-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268905	115268905	Frame_Shift_Del	C	-	p.V492fs
COAD	TCGA-CK-5913-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.S469fs
COAD	TCGA-D5-6540-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.S469fs
COAD	TCGA-F4-6570-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.S469fs
COAD	TCGA-G4-6588-01	CSGALNACT2	ENST00000374464.1,ENST00000374466.3	chr10	43650344:43651258:43654162:43654379:43655941:43656043,	43654163	43654379	43654207	43654207	Frame_Shift_Del	T	-	p.L235fs
COAD	TCGA-AA-3663-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.V81fs
COAD	TCGA-CK-5916-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729754	23729754	Frame_Shift_Del	C	-	p.V81fs
COAD	TCGA-F4-6856-01	CSTF1	ENST00000493039.1,ENST00000217109.4	chr20	54972699:54972897:54974022:54974413:54978523:54979518,	54974023	54974413	54974130	54974130	Frame_Shift_Del	T	-	p.C251fs
COAD	TCGA-A6-5665-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645275	67645276	Frame_Shift_Ins	-	G	p.Q180fs
COAD	TCGA-G4-6309-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645309	67645310	Frame_Shift_Ins	-	A	p.Q192fs
COAD	TCGA-A6-5665-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099187	56099187	Frame_Shift_Del	T	-	p.G26fs
COAD	TCGA-CK-5913-01	CTIF	ENST00000256413.3,ENST00000591387.1,ENST00000382998.4,ENST00000587752.1,ENST00000588345.1	chr18	46145908:46146116:46162984:46163056:46190122:46190182,	46162985	46163056	46163043	46163043	Frame_Shift_Del	C	-	p.A80fs
COAD	TCGA-AA-3713-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577664	57577664	Frame_Shift_Del	A	-	p.E780fs
COAD	TCGA-A6-5665-01	CTNND1	ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000531007.1,ENST00000526772.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57578870:57578958:57581782:57581845:57582865:57582953,	57581783	57581845	57581825	57581826	Frame_Shift_Ins	-	A	p.G834fs
COAD	TCGA-A6-5661-01	CTSA	ENST00000606066.1	chr20	44520554:44520666:44520911:44521123:44521363:44521403,	44520912	44521123	44520944	44520944	Frame_Shift_Del	C	-	p.N131fs
COAD	TCGA-A6-5661-01	CTSA	ENST00000606788.1,ENST00000191018.5,ENST00000372484.3,ENST00000607212.1,ENST00000372459.2	chr20	44520554:44520666:44520911:44520962:44521036:44521093,	44520912	44520962	44520944	44520944	Frame_Shift_Del	C	-	p.N131fs
COAD	TCGA-F4-6570-01	CTSE	ENST00000360218.2,ENST00000432969.2	chr1	206327473:206327596:206328961:206329060:206331020:206331560,	206328962	206329060	206329053	206329053	Frame_Shift_Del	C	-	p.T340fs
COAD	TCGA-F4-6856-01	CTSH	ENST00000525807.1,ENST00000527715.1,ENST00000533777.1,ENST00000220166.5,ENST00000534237.1	chr15	79214458:79214547:79215334:79215460:79217675:79217782,	79215335	79215460	79215391	79215392	Frame_Shift_Ins	-	T	p.N292fs
COAD	TCGA-AM-5821-01	CTU2	ENST00000312060.5,ENST00000378384.3,ENST00000453996.2,ENST00000567949.1,ENST00000566637.1,ENST00000564584.1,ENST00000564105.1	chr16	88780054:88780186:88780543:88780635:88780790:88780894,	88780544	88780635	88780635	88780636	Frame_Shift_Ins	-	GTGT	p.R366fs
COAD	TCGA-CM-6675-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43172485:43172595:43172670:43172853:43173000:43173161,	43172671	43172853	43172731	43172732	Frame_Shift_Del	CT	-	p.1503_1504del
COAD	TCGA-A6-5665-01	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870751	101870751	Frame_Shift_Del	C	-	p.C1089fs
COAD	TCGA-AZ-6598-01	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870751	101870751	Frame_Shift_Del	C	-	p.C1089fs
COAD	TCGA-A6-6653-01	CWF19L2	ENST00000532251.1,ENST00000282251.5	chr11	107205606:107205687:107207283:107207439:107219662:107219779,	107207284	107207439	107207381	107207381	Frame_Shift_Del	A	-	p.L754fs
COAD	TCGA-A6-6781-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299559	107299560	Frame_Shift_Ins	-	T	p.E467fs
COAD	TCGA-AU-6004-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299560	107299560	Frame_Shift_Del	T	-	p.E467fs
COAD	TCGA-A6-6653-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299981	107299981	Frame_Shift_Del	T	-	p.N326fs
COAD	TCGA-AD-5900-01	CXorf56	ENST00000320339.4,ENST00000371594.4	chrX	118676467:118676557:118678315:118678454:118694230:118694348,118676467:118676557:118678315:118678454:118679425:118679467,	118678316	118678454	118678354	118678354	Frame_Shift_Del	T	-	p.T80fs
COAD	TCGA-D5-5538-01	CYP11B1	ENST00000519285.1,ENST00000377675.3,ENST00000292427.4	chr8	143955884:143955902:143956372:143956570:143956649:143956728,	143956373	143956570	143956495	143956495	Frame_Shift_Del	G	-	p.Q426fs
COAD	TCGA-AA-3663-01	CYP20A1	ENST00000428265.1,ENST00000431118.1	chr2	204103757:204103857:204116689:204116832:204131236:204131404,204110568:204110618:204116689:204116832:204131236:204131404,	204116690	204116832	204116770	204116770	Frame_Shift_Del	A	-	p.R123fs
COAD	TCGA-AZ-6598-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124534951:124535774:124536538:124536691:124538476:124538670,	124536539	124536691	124536636	124536637	Frame_Shift_Ins	-	C	p.D994fs
COAD	TCGA-CK-5913-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124534951:124535774:124536538:124536691:124538476:124538670,	124536539	124536691	124536637	124536637	Frame_Shift_Del	C	-	p.D994fs
COAD	TCGA-CM-5861-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124534951:124535774:124536538:124536691:124538476:124538670,	124536539	124536691	124536637	124536637	Frame_Shift_Del	C	-	p.D994fs
COAD	TCGA-G4-6320-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124534951:124535774:124536538:124536691:124538476:124538670,	124536539	124536691	124536637	124536637	Frame_Shift_Del	C	-	p.D898fs
COAD	TCGA-AA-3713-01	DAPL1	ENST00000409042.1	chr2	159651828:159651942:159660793:159660881:159663566:159663627,	159660794	159660881	159660855	159660856	Frame_Shift_Ins	-	A	p.T40fs
COAD	TCGA-G4-6588-01	DAZAP1	ENST00000336761.6,ENST00000589484.1,ENST00000233078.4,ENST00000587833.1	chr19	1418202:1418369:1418664:1418730:1421149:1421257,1418202:1418369:1418664:1418730:1421146:1421231,	1418665	1418730	1418690	1418690	Frame_Shift_Del	G	-	p.R88fs
COAD	TCGA-AU-6004-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430253	1430254	Frame_Shift_Ins	-	C	p.A255fs
COAD	TCGA-A6-6781-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
COAD	TCGA-AD-6895-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
COAD	TCGA-AA-3492-01	DAZL	ENST00000250863.8,ENST00000399444.2,ENST00000454457.1	chr3	16638494:16638558:16638996:16639048:16639593:16639685,	16638997	16639048	16639027	16639027	Frame_Shift_Del	A	-	p.N109fs
COAD	TCGA-AA-3663-01	DBF4	ENST00000431138.1	chr7	87505914:87506093:87507367:87507448:87514293:87514473,	87507368	87507448	87507388	87507389	Frame_Shift_Ins	-	A	p.E23fs
COAD	TCGA-AA-3663-01	DBF4	ENST00000486925.1,ENST00000430279.1,ENST00000265728.1	chr7	87505914:87506093:87507367:87507540:87514293:87514473,	87507368	87507540	87507388	87507389	Frame_Shift_Ins	-	A	p.E23fs
COAD	TCGA-D5-6540-01	DBT	ENST00000370131.3,ENST00000370132.4	chr1	100684181:100684303:100696288:100696470:100700991:100701067,	100696289	100696470	100696362	100696362	Frame_Shift_Del	T	-	p.L121fs
COAD	TCGA-CM-5861-01	DCDC2B	ENST00000409358.1	chr1	32677361:32677438:32677670:32677802:32678090:32678237,	32677671	32677802	32677784	32677785	Frame_Shift_Del	AG	-	p.170_170del
COAD	TCGA-AD-6964-01	DCHS2	ENST00000339452.1	chr4	155249244:155249344:155250674:155250862:155253629:155254646,	155250675	155250862	155250707	155250707	Frame_Shift_Del	G	-	p.Q1296fs
COAD	TCGA-CM-4746-01	DCTN1	ENST00000409240.1,ENST00000434055.1,ENST00000409567.3	chr2	74598132:74598303:74598663:74598855:74604558:74604593,	74598664	74598855	74598683	74598683	Frame_Shift_Del	G	-	p.P209fs
COAD	TCGA-CM-4746-01	DCUN1D4	ENST00000381437.4,ENST00000334635.5,ENST00000510587.1,ENST00000507741.1,ENST00000451288.2	chr4	52752733:52752804:52765435:52765544:52777235:52777280,52757972:52758017:52765435:52765544:52779455:52779558,52757972:52758017:52765435:52765544:52777235:52777280,	52765436	52765544	52765450	52765450	Frame_Shift_Del	A	-	p.E174fs
COAD	TCGA-AZ-6598-01	DCX	ENST00000338081.3,ENST00000371993.2,ENST00000488120.1	chrX	110543835:110544971:110555869:110555964:110574131:110574269,110543835:110544971:110555869:110555964:110574146:110574269,	110555870	110555964	110555930	110555930	Frame_Shift_Del	G	-	p.K328fs
COAD	TCGA-AA-3663-01	DDAH1	ENST00000535924.2,ENST00000284031.8,ENST00000542148.1,ENST00000483110.1,ENST00000426972.3,ENST00000539042.1	chr1	85787095:85787251:85790422:85790566:85816097:85816217,	85790423	85790566	85790480	85790480	Frame_Shift_Del	G	-	p.N126fs
COAD	TCGA-A6-5665-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.A229fs
COAD	TCGA-A6-5661-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093160	61093160	Frame_Shift_Del	C	-	p.A229fs
COAD	TCGA-CK-5916-01	DDIT3	ENST00000551116.1	chr12	57910735:57910963:57911051:57911378:57911488:57911536,	57911052	57911378	57911083	57911083	Frame_Shift_Del	C	-	p.G59fs
COAD	TCGA-CK-5916-01	DDIT3	ENST00000547303.1	chr12	57910735:57910963:57911051:57911207:57911488:57911536,	57911052	57911207	57911083	57911083	Frame_Shift_Del	C	-	p.G59fs
COAD	TCGA-CK-5916-01	DDIT3	ENST00000346473.3	chr12	57910735:57910963:57911051:57911221:57911488:57911536,	57911052	57911221	57911083	57911083	Frame_Shift_Del	C	-	p.G59fs
COAD	TCGA-CK-5916-01	DDIT3	ENST00000547526.1	chr12	57910735:57910963:57911051:57911325:57911488:57911536,	57911052	57911325	57911083	57911083	Frame_Shift_Del	C	-	p.G59fs
COAD	TCGA-AU-6004-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30862364:30862448:30863180:30863291:30864397:30864642,30862364:30862448:30863180:30863291:30864507:30864642,	30863181	30863291	30863251	30863251	Frame_Shift_Del	C	-	p.G528fs
COAD	TCGA-F4-6856-01	DDR1	ENST00000376568.3,ENST00000376575.3,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8	chr6	30862364:30862448:30864397:30864642:30864790:30864823,30863180:30863291:30864397:30864642:30864790:30864823,	30864398	30864642	30864517	30864517	Frame_Shift_Del	G	-	p.T544fs
COAD	TCGA-F4-6856-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30863180:30863291:30864507:30864642:30864790:30864823,	30864508	30864642	30864517	30864517	Frame_Shift_Del	G	-	p.T544fs
COAD	TCGA-AD-6889-01	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000381633.3	chr22	38895404:38895504:38897134:38897285:38901955:38902299,	38897135	38897285	38897211	38897211	Frame_Shift_Del	T	-	p.K121fs
COAD	TCGA-AA-3663-01	DDX50	ENST00000373585.3,ENST00000460470.1	chr10	70673182:70673332:70673814:70673960:70679587:70679737,	70673815	70673960	70673842	70673842	Frame_Shift_Del	T	-	p.L324fs
COAD	TCGA-AY-6197-01	DDX50	ENST00000373585.3,ENST00000460470.1	chr10	70673182:70673332:70673814:70673960:70679587:70679737,	70673815	70673960	70673882	70673882	Frame_Shift_Del	A	-	p.A337fs
COAD	TCGA-A6-5665-01	DDX55	ENST00000542286.1,ENST00000354291.4,ENST00000540763.1,ENST00000536079.1,ENST00000238146.4,ENST00000538744.1	chr12	124090477:124090541:124090619:124090706:124091978:124092070,124090477:124090528:124090619:124090706:124091978:124092070,	124090620	124090706	124090693	124090694	Frame_Shift_Ins	-	A	p.L78fs
COAD	TCGA-A6-5665-01	DDX55	ENST00000545042.1	chr12	124086689:124086803:124090477:124090706:124092146:124092209,	124090478	124090706	124090693	124090694	Frame_Shift_Ins	-	A	p.L78fs
COAD	TCGA-AD-6889-01	DDX56	ENST00000467318.1	chr7	44612248:44612343:44612488:44612645:44613181:44613263,	44612489	44612645	44612541	44612541	Frame_Shift_Del	G	-	p.R111fs
COAD	TCGA-AD-6889-01	DDX56	ENST00000433257.1,ENST00000485367.1,ENST00000431640.1,ENST00000421223.1,ENST00000258772.5,ENST00000446987.1,ENST00000479440.1	chr7	44612248:44612343:44612488:44612649:44613181:44613263,	44612489	44612649	44612541	44612541	Frame_Shift_Del	G	-	p.R111fs
COAD	TCGA-CK-5913-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118650340:118650445:118651829:118651893:118656760:118657227,	118651830	118651893	118651863	118651863	Frame_Shift_Del	T	-	p.L78fs
COAD	TCGA-AY-6197-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000503715.1,ENST00000244776.7	chr6	18255966:18256082:18256591:18256686:18258183:18258262,	18256592	18256686	18256633	18256633	Frame_Shift_Del	T	-	p.G138fs
COAD	TCGA-AA-3713-01	DENND2C	ENST00000393277.1,ENST00000481894.1,ENST00000393274.1	chr1	115161006:115161103:115164515:115164686:115165607:115165720,	115164516	115164686	115164525	115164526	Frame_Shift_Ins	-	T	p.N406fs
COAD	TCGA-A6-5665-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153905958:153906347:153906610:153906778:153907235:153907403,	153906611	153906778	153906688	153906688	Frame_Shift_Del	G	-	p.P955fs
COAD	TCGA-AY-6197-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380427.1	chr9	19356969:19357152:19357962:19358158:19360241:19360487,	19357963	19358158	19358093	19358094	Frame_Shift_Del	TT	-	p.1413_1414del
COAD	TCGA-D5-6927-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380427.1	chr9	19357962:19358158:19360241:19360487:19361843:19361961,	19360242	19360487	19360253	19360253	Frame_Shift_Del	A	-	p.G1439fs
COAD	TCGA-A6-6781-01	DENR	ENST00000455982.2,ENST00000280557.6	chr12	123249850:123249934:123252034:123252151:123253328:123253387,	123252035	123252151	123252056	123252056	Frame_Shift_Del	A	-	p.Q106fs
COAD	TCGA-AD-6889-01	DGKE	ENST00000284061.3,ENST00000572944.1,ENST00000576869.1	chr17	54912326:54912620:54921379:54921539:54923050:54923170,	54921380	54921539	54921519	54921519	Frame_Shift_Del	A	-	p.D201fs
COAD	TCGA-AA-3492-01	DHODH	ENST00000574309.1,ENST00000219240.4	chr16	72042676:72042684:72045948:72046161:72048371:72048571,	72045949	72046161	72045978	72045978	Frame_Shift_Del	G	-	p.L17fs
COAD	TCGA-AY-6197-01	DHRS7	ENST00000557751.1,ENST00000216500.5,ENST00000536410.2,ENST00000554101.1,ENST00000557185.1	chr14	60616176:60616286:60616782:60616905:60619656:60619892,	60616783	60616905	60616897	60616897	Frame_Shift_Del	A	-	p.N215fs
COAD	TCGA-AU-6004-01	DHRS7	ENST00000557137.1	chr14	60616817:60616905:60620676:60620783:60622717:60622870,	60620677	60620783	60620761	60620761	Frame_Shift_Del	T	-	p.D104fs
COAD	TCGA-AA-3713-01	DHX15	ENST00000336812.4	chr4	24557873:24558033:24572276:24572470:24577865:24578301,	24572277	24572470	24572287	24572287	Frame_Shift_Del	T	-	p.T231fs
COAD	TCGA-AD-5900-01	DHX32	ENST00000284690.3	chr10	127541111:127541211:127542529:127542772:127548171:127548544,	127542530	127542772	127542590	127542591	Frame_Shift_Del	CT	-	p.344_345del
COAD	TCGA-CM-6171-01	DHX35	ENST00000373325.2,ENST00000484417.1,ENST00000252011.3,ENST00000373323.4	chr20	37650515:37650578:37652332:37652410:37653872:37654002,	37652333	37652410	37652388	37652389	Frame_Shift_Del	AT	-	p.519_519del
COAD	TCGA-AA-3492-01	DIMT1	ENST00000506390.1	chr5	61686702:61686809:61687997:61688061:61688752:61688817,61687543:61687833:61687997:61688061:61688752:61688817,	61687998	61688061	61688029	61688029	Frame_Shift_Del	T	-	p.N254fs
COAD	TCGA-G4-6628-01	DIS3L2	ENST00000433430.1,ENST00000325385.7,ENST00000409307.1,ENST00000434477.1,ENST00000445090.1,ENST00000390005.5	chr2	233199078:233199209:233199340:233199445:233200482:233200584,	233199341	233199445	233199348	233199349	Frame_Shift_Ins	-	C	p.G766fs
COAD	TCGA-CK-5916-01	DISC1	ENST00000366637.3	chr1	232094573:232094634:232144530:232144729:232162180:232162300,	232144531	232144729	232144685	232144685	Frame_Shift_Del	C	-	p.I610fs
COAD	TCGA-CK-5916-01	DISC1	ENST00000439617.2	chr1	232094573:232094634:232144530:232144795:232162180:232162300,	232144531	232144795	232144685	232144685	Frame_Shift_Del	C	-	p.I610fs
COAD	TCGA-AZ-4615-01	DLAT	ENST00000533297.1,ENST00000280346.6	chr11	111899515:111899669:111904127:111904254:111907996:111908184,	111904128	111904254	111904183	111904183	Frame_Shift_Del	A	-	p.E239fs
COAD	TCGA-A6-5661-01	DLC1	ENST00000276297.4,ENST00000503161.2,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12960298:12960362:12968250:12968332:12973094:12973166,	12968251	12968332	12968281	12968281	Frame_Shift_Del	A	-	p.L54fs
COAD	TCGA-A6-5665-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13356725	13356726	Frame_Shift_Ins	-	G	p.N286fs
COAD	TCGA-A6-5665-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38103659:38103859:38104071:38104292:38105331:38105410,	38104072	38104292	38104190	38104191	Frame_Shift_Ins	-	T	p.R331fs
COAD	TCGA-CK-5916-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79581660	79581660	Frame_Shift_Del	G	-	p.P861fs
COAD	TCGA-CK-5916-01	DMD	ENST00000361471.4,ENST00000359836.1,ENST00000474231.1,ENST00000378723.3,ENST00000358062.2,ENST00000378702.4,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31165391:31165635:31187559:31187718:31190464:31190530,	31187560	31187718	31187660	31187660	Frame_Shift_Del	G	-	p.L417fs
COAD	TCGA-G4-6588-01	DMKN	ENST00000402589.2,ENST00000498211.1,ENST00000467637.1,ENST00000419602.1,ENST00000480502.1,ENST00000601650.1,ENST00000462126.1,ENST00000464709.2,ENST00000408915.2,ENST00000483855.1,ENST00000414866.2,ENST00000602781.1,ENST00000429837.1,ENST00000462721.1,ENST00000436012.1,ENST00000493979.1,ENST00000460327.1,ENST00000339686.3,ENST00000597212.1,ENST00000490622.1,ENST00000467532.1,ENST00000469960.1,ENST00000460051.1,ENST00000492341.2,ENST00000463292.1,ENST00000488762.1,ENST00000434389.1,ENST00000488542.2,ENST00000443640.1,ENST00000472252.2	chr19	35989621:35989665:35989775:35989799:35990859:35990931,	35989776	35989799	35989795	35989795	Frame_Shift_Del	C	-	p.G444fs
COAD	TCGA-AA-3492-01	DMRT1	ENST00000382276.3,ENST00000569227.1	chr9	846959:847143:893911:894195:916762:916907,	893912	894195	894146	894146	Frame_Shift_Del	G	-	p.R258fs
COAD	TCGA-F4-6570-01	DNA2	ENST00000358410.3	chr10	70182453:70182647:70190192:70190412:70191613:70191728,	70190193	70190412	70190310	70190311	Frame_Shift_Ins	-	A	p.L697fs
COAD	TCGA-CM-6162-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211338	225211339	Frame_Shift_Del	AA	-	p.376_377del
COAD	TCGA-AU-6004-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211543	225211543	Frame_Shift_Del	A	-	p.E445fs
COAD	TCGA-F4-6570-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211543	225211543	Frame_Shift_Del	A	-	p.E445fs
COAD	TCGA-D5-6928-01	DNAH14	ENST00000495456.1,ENST00000328556.5	chr1	225305672:225305701:225306921:225306996:225311228:225311316,	225306922	225306996	225306990	225306991	Frame_Shift_Ins	-	A	p.L1387fs
COAD	TCGA-AD-5900-01	DNAH17	ENST00000389840.5,ENST00000585328.1	chr17	76475106:76475198:76475566:76475714:76476765:76476868,	76475567	76475714	76475682	76475682	Frame_Shift_Del	G	-	p.G2596fs
COAD	TCGA-A6-6780-01	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830840	13830840	Frame_Shift_Del	C	-	p.G1976fs
COAD	TCGA-A6-6781-01	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830840	13830840	Frame_Shift_Del	C	-	p.G1976fs
COAD	TCGA-CM-6171-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	84931190:84931426:84932609:84932871:84934019:84934143,	84932610	84932871	84932646	84932647	Frame_Shift_Del	CT	-	p.2834_2834del
COAD	TCGA-AZ-6598-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38830055:38830234:38831648:38831836:38834366:38834453,	38831649	38831836	38831778	38831778	Frame_Shift_Del	T	-	p.I2147fs
COAD	TCGA-AD-6889-01	DNAJB13	ENST00000339764.1	chr11	73670538:73670700:73675922:73676080:73677182:73677296,	73675923	73676080	73676057	73676057	Frame_Shift_Del	A	-	p.T156fs
COAD	TCGA-AD-5900-01	DNAJC13	ENST00000486798.1	chr3	132136552:132136604:132153381:132153462:132165318:132165394,	132153382	132153462	132153456	132153456	Frame_Shift_Del	G	-	p.R21fs
COAD	TCGA-G4-6586-01	DNAJC13	ENST00000260818.6	chr3	132222057:132222225:132224145:132224259:132226080:132226197,	132224146	132224259	132224254	132224254	Frame_Shift_Del	A	-	p.I1664fs
COAD	TCGA-AA-3663-01	DNAJC1	ENST00000376980.3	chr10	22094908:22095028:22171210:22171368:22193450:22193541,	22171211	22171368	22171214	22171214	Frame_Shift_Del	T	-	p.Q326fs
COAD	TCGA-AZ-6598-01	DNAJC21	ENST00000382021.2	chr5	34945865:34945908:34949647:34949782:34950274:34950447,	34949648	34949782	34949703	34949704	Frame_Shift_Ins	-	A	p.G414fs
COAD	TCGA-CM-4743-01	DNAJC27	ENST00000534855.1,ENST00000264711.2	chr2	25170227:25170617:25174262:25174423:25179911:25180034,	25174263	25174423	25174270	25174270	Frame_Shift_Del	C	-	p.A228fs
COAD	TCGA-G4-6628-01	DNAJC7	ENST00000588814.1,ENST00000316603.7,ENST00000426588.3,ENST00000457167.4,ENST00000586335.1	chr17	40134001:40134025:40134272:40134419:40135580:40135654,	40134273	40134419	40134398	40134398	Frame_Shift_Del	T	-	p.N313fs
COAD	TCGA-A6-6780-01	DNAJC8	ENST00000489277.1,ENST00000263697.4	chr1	28531768:28531860:28534852:28534924:28536482:28536577,	28534853	28534924	28534906	28534907	Frame_Shift_Ins	-	T	p.Q140fs
COAD	TCGA-AZ-4615-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	399145:399259:404917:405073:406929:407069,	404918	405073	405015	405016	Frame_Shift_Del	TT	-	p.1011_1011del
COAD	TCGA-AU-6004-01	DPAGT1	ENST00000409993.2	chr11	118971727:118971848:118972204:118972487:118972813:118973058,	118972205	118972487	118972239	118972240	Frame_Shift_Del	CA	-	p.43_43del
COAD	TCGA-AA-3713-01	DPEP2	ENST00000268795.5	chr16	68026075:68026096:68026852:68027160:68034350:68034467,	68026853	68027160	68026995	68026996	Frame_Shift_Ins	-	G	p.R41fs
COAD	TCGA-AD-6895-01	DPEP2	ENST00000268795.5	chr16	68026075:68026096:68026852:68027160:68034350:68034467,	68026853	68027160	68026995	68026996	Frame_Shift_Ins	-	G	p.R41fs
COAD	TCGA-G4-6588-01	DPF2	ENST00000532052.1,ENST00000528416.1,ENST00000252268.4	chr11	65113211:65113274:65113400:65113529:65113717:65113830,	65113401	65113529	65113517	65113518	Frame_Shift_Del	TG	-	p.297_298del
COAD	TCGA-AZ-4615-01	DPP4	ENST00000434918.2	chr2	162903424:162903516:162903912:162904008:162929908:162929973,	162903913	162904008	162903954	162903954	Frame_Shift_Del	T	-	p.N51fs
COAD	TCGA-AZ-4615-01	DPP4	ENST00000490286.1,ENST00000497461.1,ENST00000360534.3,ENST00000461836.1,ENST00000413651.1	chr2	162903424:162903516:162903912:162904011:162929908:162929973,	162903913	162904011	162903954	162903954	Frame_Shift_Del	T	-	p.N51fs
COAD	TCGA-D5-6533-01	DPP6	ENST00000332007.3,ENST00000377770.3,ENST00000427557.1,ENST00000404039.1	chr7	154598703:154598822:154645489:154645537:154659704:154659803,	154645490	154645537	154645531	154645535	Frame_Shift_Del	AAGAA	-	p.569_571del
COAD	TCGA-A6-5661-01	DPP7	ENST00000463619.1,ENST00000483783.1,ENST00000371579.2	chr9	140006141:140006206:140006324:140006481:140006563:140006621,	140006325	140006481	140006326	140006327	Frame_Shift_Ins	-	C	p.G402fs
COAD	TCGA-AD-6889-01	DROSHA	ENST00000344624.3,ENST00000511367.2	chr5	31515100:31515326:31521229:31521322:31526185:31526397,31515560:31515671:31521229:31521322:31526185:31526344,	31521230	31521322	31521250	31521250	Frame_Shift_Del	T	-	p.E310fs
COAD	TCGA-AD-6889-01	DSCAML1	ENST00000527706.1,ENST00000321322.6	chr11	117314601:117314755:117321264:117321404:117329469:117329625,	117321265	117321404	117321332	117321332	Frame_Shift_Del	G	-	p.P1274fs
COAD	TCGA-AU-6004-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56485020	56485020	Frame_Shift_Del	T	-	p.N1271fs
COAD	TCGA-AA-3492-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581679	17581680	Frame_Shift_Ins	-	T	p.M100fs
COAD	TCGA-DM-A1HA-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581679	17581680	Frame_Shift_Ins	-	T	p.M100fs
COAD	TCGA-G4-6309-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581679	17581680	Frame_Shift_Ins	-	T	p.M100fs
COAD	TCGA-AD-5900-01	DSTYK	ENST00000367162.3,ENST00000367160.4	chr1	205111632:205116873:205117332:205117467:205119807:205119898,	205117333	205117467	205117394	205117395	Frame_Shift_Ins	-	T	p.K847fs
COAD	TCGA-AD-6889-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212220638:212220759:212236225:212236291:212238258:212238371,	212236226	212236291	212236291	212236291	Frame_Shift_Del	G	-	p.K175fs
COAD	TCGA-AD-6964-01	DTX4	ENST00000531902.1,ENST00000532982.1,ENST00000227451.3	chr11	58956634:58956796:58958586:58958648:58959570:58959723,	58958587	58958648	58958609	58958609	Frame_Shift_Del	A	-	p.L394fs
COAD	TCGA-D5-6540-01	DTX4	ENST00000531902.1,ENST00000532982.1,ENST00000227451.3	chr11	58956634:58956796:58958586:58958648:58959570:58959723,	58958587	58958648	58958609	58958609	Frame_Shift_Del	A	-	p.L394fs
COAD	TCGA-G4-6628-01	DYNC1I2	ENST00000409773.1,ENST00000445378.1,ENST00000409453.1,ENST00000456808.1,ENST00000358002.6,ENST00000409317.1,ENST00000411953.1,ENST00000409197.1	chr2	172544010:172544137:172546656:172546773:172549286:172549404,172544301:172544383:172546656:172546773:172549286:172549404,	172546657	172546773	172546762	172546762	Frame_Shift_Del	A	-	p.R32fs
COAD	TCGA-G4-6628-01	DYNC1I2	ENST00000412370.1,ENST00000410079.3,ENST00000438879.1,ENST00000456808.1,ENST00000358002.6,ENST00000411953.1,ENST00000423910.1	chr2	172546656:172546773:172549286:172549404:172571837:172571860,172546656:172546773:172549286:172549404:172563796:172563887,172546656:172546773:172549286:172549404:172563742:172563887,	172549287	172549404	172549338	172549339	Frame_Shift_Ins	-	A	p.E54fs
COAD	TCGA-AY-6197-01	DYNC1I2	ENST00000412370.1,ENST00000410079.3,ENST00000438879.1,ENST00000456808.1,ENST00000358002.6,ENST00000411953.1,ENST00000423910.1	chr2	172546656:172546773:172549286:172549404:172571837:172571860,172546656:172546773:172549286:172549404:172563796:172563887,172546656:172546773:172549286:172549404:172563742:172563887,	172549287	172549404	172549339	172549339	Frame_Shift_Del	A	-	p.E54fs
COAD	TCGA-D5-6533-01	DYNC2LI1	ENST00000378587.3,ENST00000260605.8,ENST00000443170.3,ENST00000605786.1	chr2	44023856:44023934:44027979:44028056:44028777:44028848,	44027980	44028056	44028009	44028009	Frame_Shift_Del	A	-	p.L228fs
COAD	TCGA-AZ-6598-01	DZANK1	ENST00000487128.1,ENST00000358866.6,ENST00000377630.5,ENST00000262547.5,ENST00000329494.5,ENST00000609267.1,ENST00000470526.1,ENST00000357236.4,ENST00000608192.1,ENST00000460891.1	chr20	18414295:18414409:18423990:18424108:18429627:18429632,	18423991	18424108	18424086	18424086	Frame_Shift_Del	G	-	p.R218fs
COAD	TCGA-AD-6889-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363318	108363319	Frame_Shift_Ins	-	A	p.P483fs
COAD	TCGA-CK-5916-01	E2F7	ENST00000322886.7	chr12	77415027:77417965:77419337:77419762:77421662:77421918,	77419338	77419762	77419717	77419717	Frame_Shift_Del	G	-	p.P729fs
COAD	TCGA-AA-3492-01	E4F1	ENST00000301727.4,ENST00000564139.1	chr16	2283011:2283184:2283438:2283648:2283882:2283991,	2283439	2283648	2283540	2283541	Frame_Shift_Ins	-	G	p.A386fs
COAD	TCGA-AD-6895-01	EBF3	ENST00000355311.5,ENST00000368648.3	chr10	131641400:131641466:131646655:131646744:131665404:131665531,	131646656	131646744	131646712	131646713	Frame_Shift_Ins	-	A	p.Q349fs
COAD	TCGA-AA-3713-01	ECM2	ENST00000375540.1,ENST00000344604.5,ENST00000395534.2	chr9	95279969:95280157:95284856:95285175:95298214:95298254,	95284857	95285175	95285103	95285104	Frame_Shift_Ins	-	A	p.Q16fs
COAD	TCGA-CM-6162-01	EDAR	ENST00000409271.1,ENST00000258443.2,ENST00000376651.1	chr2	109529133:109529220:109539823:109539909:109545653:109545835,	109539824	109539909	109539837	109539837	Frame_Shift_Del	G	-	p.N144fs
COAD	TCGA-F4-6856-01	EDEM3	ENST00000367512.3,ENST00000318130.8	chr1	184686673:184686757:184688295:184688379:184688576:184688702,	184688296	184688379	184688314	184688314	Frame_Shift_Del	T	-	p.H382fs
COAD	TCGA-CM-5861-01	EEF1D	ENST00000442189.2	chr8	144668923:144669022:144671160:144672251:144674816:144674830,144668923:144669022:144671160:144672251:144672777:144672899,	144671161	144672251	144671992	144671992	Frame_Shift_Del	T	-	p.K87fs
COAD	TCGA-CA-6719-01	EFHC1	ENST00000480623.1,ENST00000433625.2,ENST00000371068.5,ENST00000538167.1	chr6	52329692:52329913:52334130:52334271:52343834:52344048,	52334131	52334271	52334207	52334208	Frame_Shift_Ins	-	A	p.P405fs
COAD	TCGA-AU-6004-01	EFHC1	ENST00000480623.1,ENST00000433625.2,ENST00000371068.5,ENST00000538167.1	chr6	52329692:52329913:52334130:52334271:52343834:52344048,	52334131	52334271	52334208	52334208	Frame_Shift_Del	A	-	p.P405fs
COAD	TCGA-G4-6628-01	EFHC1	ENST00000480623.1,ENST00000433625.2,ENST00000371068.5,ENST00000538167.1	chr6	52329692:52329913:52334130:52334271:52343834:52344048,	52334131	52334271	52334208	52334208	Frame_Shift_Del	A	-	p.P405fs
COAD	TCGA-AU-6004-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63175475	63175478	Frame_Shift_Del	ACTG	-	p.498_499del
COAD	TCGA-A6-6781-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65349656	65349657	Frame_Shift_Del	GA	-	p.504_505del
COAD	TCGA-A6-6781-01	EHD1	ENST00000359393.2,ENST00000320631.3,ENST00000433803.1,ENST00000421510.1	chr11	64622793:64622958:64627395:64627808:64641892:64641990,	64627396	64627808	64627570	64627570	Frame_Shift_Del	G	-	p.E248fs
COAD	TCGA-AM-5820-01	EIF2A	ENST00000477551.1,ENST00000465535.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150285983:150286079:150289744:150290316:150293435:150293549,	150289745	150290316	150289746	150289746	Frame_Shift_Del	A	-	p.P271fs
COAD	TCGA-AA-3663-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150299404:150299533:150300986:150301052,150293435:150293549:150299404:150299533:150300986:150301052,	150299405	150299533	150299510	150299510	Frame_Shift_Del	A	-	p.D534fs
COAD	TCGA-AA-3713-01	EIF2AK1	ENST00000495565.1	chr7	6084192:6084292:6085701:6085782:6086622:6086722,6084192:6084292:6085701:6085782:6086407:6086611,	6085702	6085782	6085740	6085740	Frame_Shift_Del	T	-	p.I198fs
COAD	TCGA-CM-6171-01	EIF2AK2	ENST00000405334.1,ENST00000233057.4,ENST00000395127.2,ENST00000462861.1	chr2	37334488:37334538:37334616:37334670:37336336:37336438,	37334617	37334670	37334666	37334666	Frame_Shift_Del	A	-	p.F495fs
COAD	TCGA-G4-6320-01	EIF2AK3	ENST00000303236.3,ENST00000419748.1	chr2	88892789:88892923:88894986:88895181:88913241:88913371,	88894987	88895181	88895173	88895173	Frame_Shift_Del	C	-	p.N150fs
COAD	TCGA-AU-6004-01	EIF3M	ENST00000525782.1,ENST00000524896.1	chr11	32608591:32608690:32611092:32611187:32615411:32615495,32610139:32610278:32611092:32611187:32615411:32615495,32605429:32605475:32611092:32611187:32615411:32615495,	32611093	32611187	32611130	32611130	Frame_Shift_Del	A	-	p.E159fs
COAD	TCGA-CK-5916-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820935	10820935	Frame_Shift_Del	G	-	p.S788fs
COAD	TCGA-AZ-6598-01	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41506169:41508164:41515056:41515506:41517087:41517280,	41515057	41515506	41515416	41515417	Frame_Shift_Del	TA	-	p.299_300del
COAD	TCGA-G4-6306-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980352	201980352	Frame_Shift_Del	C	-	p.V29fs
COAD	TCGA-G4-6306-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980352	201980352	Frame_Shift_Del	C	-	p.V29fs
COAD	TCGA-G4-6293-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981118	201981119	Frame_Shift_Ins	-	C	p.F66fs
COAD	TCGA-F4-6461-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000470384.1,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981772:201981887:201982074:201982164:201982309:201982325,	201982075	201982164	201982163	201982164	Frame_Shift_Ins	-	G	p.S229fs
COAD	TCGA-AY-6197-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641028	96641029	Frame_Shift_Ins	-	C	p.S173fs
COAD	TCGA-CM-5861-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641384	96641384	Frame_Shift_Del	A	-	p.A291fs
COAD	TCGA-CM-5861-01	ELK3	ENST00000549985.1	chr12	96640908:96641061:96641380:96641512:96653508:96653631,	96641381	96641512	96641384	96641384	Frame_Shift_Del	A	-	p.A291fs
COAD	TCGA-AU-6004-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234038	95234039	Frame_Shift_Ins	-	T	p.K477fs
COAD	TCGA-AZ-6598-01	ELP3	ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000542181.1,ENST00000537665.1,ENST00000523687.1,ENST00000524103.1,ENST00000520110.1,ENST00000519261.1,ENST00000521015.1	chr8	27987018:27987180:27989794:27989921:27995214:27995408,	27989795	27989921	27989921	27989924	Frame_Shift_Del	AGTA	-	p.302_302del
COAD	TCGA-CM-5861-01	EML2	ENST00000245925.3,ENST00000586195.1,ENST00000587152.1,ENST00000536630.1,ENST00000399594.3,ENST00000586902.1,ENST00000588000.1,ENST00000589876.1,ENST00000590580.1,ENST00000588308.1	chr19	46124811:46124895:46129962:46130097:46133208:46133290,46127977:46128076:46129962:46130097:46136118:46136229,46127977:46128076:46129962:46130097:46133208:46133290,	46129963	46130097	46129994	46129994	Frame_Shift_Del	C	-	p.G237fs
COAD	TCGA-AD-6895-01	EML2	ENST00000587804.1	chr19	46133221:46133304:46136118:46136397:46137579:46137729,	46136119	46136397	46136160	46136160	Frame_Shift_Del	C	-	p.V157fs
COAD	TCGA-AA-3663-01	EML4	ENST00000401738.3,ENST00000318522.5	chr2	42483640:42483770:42488260:42488434:42490317:42490446,	42488261	42488434	42488302	42488303	Frame_Shift_Del	AA	-	p.127_127del
COAD	TCGA-AZ-4615-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087182	89087182	Frame_Shift_Del	T	-	p.N1764fs
COAD	TCGA-AA-3713-01	ENAH	ENST00000366844.3,ENST00000358675.2	chr1	225688693:225688772:225692692:225692755:225695652:225695719,	225692693	225692755	225692735	225692735	Frame_Shift_Del	T	-	p.N520fs
COAD	TCGA-CM-6171-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931270	73931270	Frame_Shift_Del	C	-	p.R275fs
COAD	TCGA-CM-6171-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931270	73931270	Frame_Shift_Del	C	-	p.R275fs
COAD	TCGA-AD-5900-01	ENDOU	ENST00000229003.3,ENST00000422538.3,ENST00000545824.2	chr12	48105415:48105558:48106298:48106405:48107057:48107171,	48106299	48106405	48106391	48106392	Frame_Shift_Ins	-	T	p.G253fs
COAD	TCGA-CK-5913-01	ENDOV	ENST00000518644.1,ENST00000518137.1,ENST00000517295.2,ENST00000522200.1,ENST00000521565.1	chr17	78389468:78389621:78395627:78395762:78396005:78396042,	78395628	78395762	78395664	78395665	Frame_Shift_Ins	-	C	p.A89fs
COAD	TCGA-AD-6889-01	ENKUR	ENST00000483339.2	chr10	25279391:25279538:25284574:25284798:25304788:25304889,	25284575	25284798	25284576	25284576	Frame_Shift_Del	T	-	p.K149fs
COAD	TCGA-CM-6171-01	ENO3	ENST00000519584.1,ENST00000522425.1,ENST00000518175.1,ENST00000323997.6	chr17	4859265:4859438:4859867:4859976:4860125:4860184,	4859868	4859976	4859894	4859894	Frame_Shift_Del	G	-	p.W322fs
COAD	TCGA-AD-6964-01	ENPP3	ENST00000414305.1,ENST00000357639.3,ENST00000358229.5	chr6	131995301:131995421:131996219:131996329:131997875:131997937,	131996220	131996329	131996291	131996291	Frame_Shift_Del	A	-	p.I278fs
COAD	TCGA-AA-3492-01	ENSA	ENST00000369014.5,ENST00000361532.5	chr1	150595206:150595335:150598117:150598284:150599942:150600068,	150598118	150598284	150598168	150598169	Frame_Shift_Ins	-	G	p.P100fs
COAD	TCGA-D5-6928-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944739:139944990:139945353:139945581:139945662:139945822,	139945354	139945581	139945517	139945517	Frame_Shift_Del	C	-	p.G204fs
COAD	TCGA-G4-6320-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944739:139944990:139945353:139945581:139945662:139945822,	139945354	139945581	139945517	139945517	Frame_Shift_Del	C	-	p.G204fs
COAD	TCGA-AA-3663-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132508321:132508486:132510190:132510349:132511981:132512076,	132510191	132510349	132510215	132510215	Frame_Shift_Del	C	-	p.A1627fs
COAD	TCGA-G4-6588-01	EPB41	ENST00000347529.3	chr1	29313959:29314417:29319841:29320054:29323726:29323831,29313959:29314417:29319841:29320054:29338376:29338419,	29319842	29320054	29320029	29320030	Frame_Shift_Del	AC	-	p.10_10del
COAD	TCGA-A6-5657-01	EPB41	ENST00000460378.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373798.1,ENST00000356093.2	chr1	29391493:29391670:29435847:29435949:29438879:29438960,29424318:29424447:29435847:29435949:29438879:29438960,	29435848	29435949	29435945	29435945	Frame_Shift_Del	C	-	p.T581fs
COAD	TCGA-A6-6653-01	EPB41L3	ENST00000542146.1,ENST00000579271.1	chr18	5397396:5397425:5398019:5398142:5400967:5401042,5397396:5397425:5398019:5398142:5406775:5406967,5397396:5397425:5398019:5398142:5400495:5400594,	5398020	5398142	5398119	5398120	Frame_Shift_Ins	-	T	p.K791fs
COAD	TCGA-CM-4746-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461054:16461062:16461530:16461684:16462149:16462265,	16461531	16461684	16461564	16461564	Frame_Shift_Del	C	-	p.A517fs
COAD	TCGA-A6-6781-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
COAD	TCGA-CM-4743-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
COAD	TCGA-AU-6004-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561447	142561448	Frame_Shift_Ins	-	G	p.P53fs
COAD	TCGA-AA-3663-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.K131fs
COAD	TCGA-F4-6856-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026459	226026460	Frame_Shift_Del	TT	-	p.156_157del
COAD	TCGA-G4-6586-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232949	19232950	Frame_Shift_Ins	-	A	p.S467fs
COAD	TCGA-AD-6895-01	EPRS	ENST00000366923.3,ENST00000609181.1,ENST00000464052.1	chr1	220170517:220170684:220174479:220174597:220178589:220178702,	220174480	220174597	220174484	220174484	Frame_Shift_Del	T	-	p.N726fs
COAD	TCGA-CK-5913-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000371730.2	chr1	51821980:51822518:51826842:51827027:51829537:51829700,	51826843	51827027	51827022	51827022	Frame_Shift_Del	T	-	p.R789fs
COAD	TCGA-AA-3713-01	EPS15L1	ENST00000602022.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000602009.1,ENST00000592031.1,ENST00000535753.2	chr19	16532129:16532287:16535893:16536127:16539512:16539572,	16535894	16536127	16535994	16535994	Frame_Shift_Del	G	-	p.P231fs
COAD	TCGA-AA-3713-01	ERBB3	ENST00000415288.2,ENST00000450146.2,ENST00000553131.1,ENST00000551085.1,ENST00000267101.3	chr12	56490531:56490630:56490828:56491014:56491568:56491724,	56490829	56491014	56490962	56490962	Frame_Shift_Del	G	-	p.R803fs
COAD	TCGA-F4-6570-01	ERI1	ENST00000520332.1,ENST00000250263.7,ENST00000523898.1,ENST00000518663.1,ENST00000519292.1	chr8	8873841:8873915:8875806:8875916:8877859:8877974,	8875807	8875916	8875845	8875845	Frame_Shift_Del	A	-	p.L207fs
COAD	TCGA-AA-3713-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623865	623865	Frame_Shift_Del	T	-	p.R163fs
COAD	TCGA-CM-5861-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623865	623865	Frame_Shift_Del	T	-	p.R163fs
COAD	TCGA-AZ-4615-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623985	623986	Frame_Shift_Ins	-	T	p.F123fs
COAD	TCGA-AU-6004-01	ERMP1	ENST00000339450.5,ENST00000489219.1,ENST00000214893.5,ENST00000543230.1,ENST00000462592.1	chr9	5801271:5801328:5805026:5805217:5805610:5805785,	5805027	5805217	5805061	5805061	Frame_Shift_Del	A	-	p.L627fs
COAD	TCGA-CK-5916-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154690	19154691	Frame_Shift_Ins	-	T	p.S39fs
COAD	TCGA-AD-6889-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154750	19154750	Frame_Shift_Del	T	-	p.S19fs
COAD	TCGA-CK-5916-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154750	19154750	Frame_Shift_Del	T	-	p.S19fs
COAD	TCGA-CM-6675-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53680452	53680453	Frame_Shift_Del	AG	-	p.1311_1311del
COAD	TCGA-A6-5665-01	ESR1	ENST00000440973.1	chr6	152023009:152023140:152128977:152129499:152163731:152163922,	152128978	152129499	152129287	152129287	Frame_Shift_Del	C	-	p.Y80fs
COAD	TCGA-AA-3663-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686612	Frame_Shift_Del	AA	-	p.509_510del
COAD	TCGA-AA-3663-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686612	Frame_Shift_Del	AA	-	p.509_510del
COAD	TCGA-G4-6628-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975473	13975473	Frame_Shift_Del	G	-	p.T99fs
COAD	TCGA-G4-6588-01	ETV3	ENST00000460850.1,ENST00000326786.4	chr1	157105262:157105500:157106098:157106157:157108107:157108127,	157106099	157106157	157106116	157106116	Frame_Shift_Del	T	-	p.K10fs
COAD	TCGA-A6-5665-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610700	41610701	Frame_Shift_Ins	-	G	p.R134fs
COAD	TCGA-G4-6309-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610700	41610701	Frame_Shift_Ins	-	G	p.R134fs
COAD	TCGA-A6-6780-01	ETV6	ENST00000396373.4	chr12	11992073:11992238:12006360:12006495:12022357:12022903,	12006361	12006495	12006446	12006447	Frame_Shift_Del	CT	-	p.138_138del
COAD	TCGA-AZ-4615-01	ETV7	ENST00000340181.4,ENST00000339796.5	chr6	36339106:36339337:36341229:36341355:36343647:36343812,	36341230	36341355	36341285	36341285	Frame_Shift_Del	A	-	p.G72fs
COAD	TCGA-G4-6588-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5757990:5758089:5785278:5785491:5795334:5795444,	5785279	5785491	5785362	5785362	Frame_Shift_Del	C	-	p.L549fs
COAD	TCGA-AD-6889-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93142714:93142775:93159358:93159456:93159855:93159945,	93159359	93159456	93159365	93159366	Frame_Shift_Ins	-	T	p.M408fs
COAD	TCGA-AA-3492-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000331029.7,ENST00000332035.6,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29695184:29695270:29695588:29695841:29696111:29696326,29695223:29695321:29695588:29695841:29696111:29696326,	29695589	29695841	29695765	29695765	Frame_Shift_Del	G	-	p.P618fs
COAD	TCGA-F4-6856-01	EXD2	ENST00000312994.5,ENST00000409242.1	chr14	69670633:69670717:69676140:69676520:69695532:69695789,69658551:69658756:69676140:69676520:69695532:69695789,	69676141	69676520	69676347	69676347	Frame_Shift_Del	C	-	p.L53fs
COAD	TCGA-G4-6588-01	EXD3	ENST00000475006.1,ENST00000342129.4,ENST00000340951.4,ENST00000460390.2,ENST00000490886.1,ENST00000479452.1	chr9	140262387:140262441:140267356:140267524:140267877:140268051,	140267357	140267524	140267461	140267462	Frame_Shift_Ins	-	G	p.S120fs
COAD	TCGA-D5-6540-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56762882:56763066:56765850:56766050:56768509:56768704,	56765851	56766050	56766040	56766040	Frame_Shift_Del	A	-	p.E761fs
COAD	TCGA-CM-4743-01	EXOC3L1	ENST00000314586.6	chr16	67220933:67221041:67221127:67221740:67222623:67222843,	67221128	67221740	67221459	67221459	Frame_Shift_Del	G	-	p.L237fs
COAD	TCGA-G4-6588-01	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28574985	28574985	Frame_Shift_Del	T	-	p.L470fs
COAD	TCGA-CK-5916-01	FAM114A1	ENST00000358869.2,ENST00000512889.1,ENST00000515037.1	chr4	38916541:38916694:38924390:38924514:38930862:38930904,	38924391	38924514	38924399	38924400	Frame_Shift_Ins	-	T	p.S318fs
COAD	TCGA-CM-6171-01	FAM118B	ENST00000528985.1,ENST00000525728.1,ENST00000533050.1,ENST00000360194.4	chr11	126110686:126110939:126120400:126120628:126124199:126124272,	126120401	126120628	126120425	126120425	Frame_Shift_Del	T	-	p.T121fs
COAD	TCGA-D5-6927-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000446420.2,ENST00000277165.6	chr9	96289436:96289524:96291634:96291862:96294436:96294611,	96291635	96291862	96291773	96291773	Frame_Shift_Del	C	-	p.L548fs
COAD	TCGA-G4-6628-01	FAM133B	ENST00000438306.1,ENST00000427372.1,ENST00000445716.1	chr7	92191595:92191682:92195327:92195375:92199136:92199229,	92195328	92195375	92195334	92195334	Frame_Shift_Del	T	-	p.A218fs
COAD	TCGA-G4-6628-01	FAM133B	ENST00000415397.2	chr7	92191595:92191682:92195323:92195375:92199136:92199229,	92195324	92195375	92195334	92195334	Frame_Shift_Del	T	-	p.A218fs
COAD	TCGA-AZ-6598-01	FAM13B	ENST00000425075.2	chr5	137289854:137290065:137292165:137292231:137295304:137295444,	137292166	137292231	137292192	137292193	Frame_Shift_Ins	-	T	p.T376fs
COAD	TCGA-AD-5900-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.T118fs
COAD	TCGA-AZ-6598-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.T118fs
COAD	TCGA-CM-6674-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.T118fs
COAD	TCGA-G4-6588-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.T118fs
COAD	TCGA-A6-6780-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.T118fs
COAD	TCGA-D5-6540-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.T118fs
COAD	TCGA-F4-6856-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.T118fs
COAD	TCGA-AD-5900-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067182	62067183	Frame_Shift_Ins	-	A	p.L319fs
COAD	TCGA-AD-5900-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067182	62067183	Frame_Shift_Ins	-	A	p.L319fs
COAD	TCGA-G4-6586-01	FAM161B	ENST00000534936.1,ENST00000286544.3	chr14	74404304:74404404:74404650:74404815:74407628:74407756,	74404651	74404815	74404797	74404798	Frame_Shift_Ins	-	T	p.K536fs
COAD	TCGA-A6-6780-01	FAM168A	ENST00000356467.4,ENST00000064778.4	chr11	73120531:73120706:73122438:73122581:73130918:73131044,	73122439	73122581	73122520	73122520	Frame_Shift_Del	G	-	p.Y114fs
COAD	TCGA-D5-6540-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000350210.2	chr1	155218195:155218264:155220066:155220612:155220885:155220955,	155220067	155220612	155220390	155220390	Frame_Shift_Del	G	-	p.P396fs
COAD	TCGA-D5-6540-01	FAM189B	ENST00000368366.1	chr1	155218195:155218264:155220066:155220720:155220885:155220955,	155220067	155220720	155220390	155220390	Frame_Shift_Del	G	-	p.P396fs
COAD	TCGA-AZ-4615-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698177	2698177	Frame_Shift_Del	A	-	p.P830fs
COAD	TCGA-AZ-6598-01	FAM208A	ENST00000493960.2	chr3	56662519:56662642:56667071:56667994:56672733:56672793,	56667072	56667994	56667960	56667961	Frame_Shift_Del	CA	-	p.953_954del
COAD	TCGA-AZ-4615-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5789083	5789084	Frame_Shift_Del	CT	-	p.1233_1233del
COAD	TCGA-D5-6930-01	FAM210A	ENST00000592976.1,ENST00000402563.1	chr18	13666492:13666712:13681603:13682104:13726327:13726504,13671910:13671972:13681603:13682104:13687741:13687881,13671920:13671972:13681603:13682104:13726327:13726504,	13681604	13682104	13681751	13681751	Frame_Shift_Del	T	-	p.K109fs
COAD	TCGA-CM-4743-01	FAM214B	ENST00000605244.1,ENST00000488109.2,ENST00000378561.1,ENST00000603301.1,ENST00000378554.2,ENST00000378566.1,ENST00000322813.5,ENST00000378557.1	chr9	35106248:35106407:35106534:35106640:35106829:35106888,	35106535	35106640	35106591	35106592	Frame_Shift_Ins	-	G	p.S335fs
COAD	TCGA-D5-6927-01	FAM214B	ENST00000605244.1,ENST00000488109.2,ENST00000378561.1,ENST00000603301.1,ENST00000378554.2,ENST00000378566.1,ENST00000322813.5,ENST00000378557.1	chr9	35106248:35106407:35106534:35106640:35106829:35106888,	35106535	35106640	35106591	35106592	Frame_Shift_Ins	-	G	p.S335fs
COAD	TCGA-AA-3713-01	FAM214B	ENST00000378566.1	chr9	35107377:35107565:35108124:35108346:35108590:35108734,	35108125	35108346	35108148	35108148	Frame_Shift_Del	C	-	p.A42fs
COAD	TCGA-CM-6170-01	FAM78B	ENST00000441649.1	chr1	166029137:166029900:166038748:166040000:166135222:166135462,	166038749	166040000	166039571	166039572	Frame_Shift_Ins	-	G	p.P231fs
COAD	TCGA-CM-6170-01	FAM78B	ENST00000456900.1	chr1	166029137:166029900:166039071:166040000:166135222:166135462,	166039072	166040000	166039571	166039572	Frame_Shift_Ins	-	G	p.P231fs
COAD	TCGA-A6-6780-01	FAM81B	ENST00000507832.1,ENST00000283357.5	chr5	94772503:94772610:94782265:94782401:94783972:94784168,	94782266	94782401	94782312	94782312	Frame_Shift_Del	A	-	p.N313fs
COAD	TCGA-AA-3492-01	FAM81B	ENST00000507832.1,ENST00000283357.5	chr5	94772503:94772610:94782265:94782401:94783972:94784168,	94782266	94782401	94782312	94782312	Frame_Shift_Del	A	-	p.N313fs
COAD	TCGA-AY-6197-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.Q297fs
COAD	TCGA-G4-6628-01	FAM98A	ENST00000238823.8,ENST00000403368.1	chr2	33812306:33812387:33813401:33813586:33817146:33817281,	33813402	33813586	33813524	33813525	Frame_Shift_Ins	-	T	p.A134fs
COAD	TCGA-AD-6889-01	FANCA	ENST00000563673.1,ENST00000389302.3,ENST00000543736.1,ENST00000534992.1,ENST00000389301.3,ENST00000567621.1,ENST00000566889.1,ENST00000568369.1	chr16	89869666:89869749:89871687:89871800:89874701:89874774,	89871688	89871800	89871753	89871754	Frame_Shift_Del	CA	-	p.215_215del
COAD	TCGA-G4-6299-01	FANCD2	ENST00000287647.3,ENST00000383807.1,ENST00000419585.1	chr3	10130511:10130634:10131975:10132069:10133864:10133936,	10131976	10132069	10132030	10132031	Frame_Shift_Ins	-	A	p.V1246fs
COAD	TCGA-AU-6004-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450110	29450110	Frame_Shift_Del	A	-	p.P174fs
COAD	TCGA-D5-6927-01	FAS	ENST00000352159.4,ENST00000477270.1,ENST00000487314.1,ENST00000357339.2,ENST00000313771.5,ENST00000355740.2,ENST00000355279.2,ENST00000371857.3	chr10	90767456:90767594:90768645:90768754:90770295:90770357,	90768646	90768754	90768707	90768708	Frame_Shift_Ins	-	T	p.N132fs
COAD	TCGA-CK-5916-01	FASTK	ENST00000482806.1	chr7	150774077:150774114:150774187:150774488:150774707:150774867,	150774188	150774488	150774464	150774464	Frame_Shift_Del	C	-	p.L382fs
COAD	TCGA-CK-5916-01	FASTK	ENST00000460980.1,ENST00000482571.1,ENST00000483953.1,ENST00000489884.1,ENST00000297532.6,ENST00000353841.2	chr7	150774187:150774323:150774396:150774488:150774707:150774867,	150774397	150774488	150774464	150774464	Frame_Shift_Del	C	-	p.L382fs
COAD	TCGA-A6-5665-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187517756	187517756	Frame_Shift_Del	G	-	p.P4313fs
COAD	TCGA-AD-5900-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187538941	187538941	Frame_Shift_Del	T	-	p.G2934fs
COAD	TCGA-F4-6570-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187538941	187538942	Frame_Shift_Ins	-	G	p.Q2933fs
COAD	TCGA-G4-6304-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542109	187542110	Frame_Shift_Ins	-	G	p.P1877fs
COAD	TCGA-G4-6628-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542109	187542110	Frame_Shift_Ins	-	G	p.P1877fs
COAD	TCGA-CM-6171-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16091458:16091728:16093870:16094058:16095022:16095125,	16093871	16094058	16094041	16094041	Frame_Shift_Del	C	-	p.P140fs
COAD	TCGA-CM-5861-01	FBLIM1	ENST00000400773.1,ENST00000332305.5,ENST00000375771.1,ENST00000375766.3	chr1	16101112:16101291:16103664:16103782:16111042:16111180,	16103665	16103782	16103762	16103763	Frame_Shift_Ins	-	A	p.E330fs
COAD	TCGA-AA-3492-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.F2554fs
COAD	TCGA-G4-6586-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.F2554fs
COAD	TCGA-G4-6588-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610311	127610311	Frame_Shift_Del	C	-	p.F2554fs
COAD	TCGA-CK-5916-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8156348:8156474:8159329:8159449:8160258:8160387,	8159330	8159449	8159362	8159362	Frame_Shift_Del	G	-	p.P1958fs
COAD	TCGA-F4-6570-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8174514:8174637:8175728:8175851:8175941:8176063,	8175729	8175851	8175743	8175743	Frame_Shift_Del	C	-	p.G1440fs
COAD	TCGA-AA-3663-01	FBRSL1	ENST00000261673.6	chr12	133067387:133067447:133084738:133084936:133102319:133102409,	133084739	133084936	133084822	133084822	Frame_Shift_Del	C	-	p.C125fs
COAD	TCGA-CM-6171-01	FBRSL1	ENST00000261673.6,ENST00000434748.2	chr12	133146923:133147126:133147892:133148110:133148873:133148924,	133147893	133148110	133148061	133148061	Frame_Shift_Del	C	-	p.A461fs
COAD	TCGA-AD-6889-01	FBXL20	ENST00000583610.1	chr17	37415383:37415549:37417704:37417820:37420427:37420640,	37417705	37417820	37417765	37417765	Frame_Shift_Del	G	-	p.P388fs
COAD	TCGA-A6-6781-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147806940	147806940	Frame_Shift_Del	A	-	p.K694fs
COAD	TCGA-A6-6781-01	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147806940	147806940	Frame_Shift_Del	A	-	p.K694fs
COAD	TCGA-A6-5665-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147807397	147807397	Frame_Shift_Del	G	-	p.R847fs
COAD	TCGA-DM-A28H-01	FBXO42	ENST00000375592.3	chr1	16579590:16579647:16580129:16580226:16582205:16582316,	16580130	16580226	16580190	16580191	Frame_Shift_Ins	-	CACTG	p.W268fs
COAD	TCGA-AA-3663-01	FBXW4	ENST00000331272.7	chr10	103371413:103371526:103372093:103372234:103384501:103384567,	103372094	103372234	103372201	103372201	Frame_Shift_Del	A	-	p.P291fs
COAD	TCGA-AA-3713-01	FCAMR	ENST00000400962.3,ENST00000488345.1,ENST00000450945.2,ENST00000324852.4,ENST00000487149.1	chr1	207135699:207135896:207139059:207139203:207140396:207140457,	207139060	207139203	207139176	207139177	Frame_Shift_Ins	-	T	p.R66fs
COAD	TCGA-AA-3713-01	FCAMR	ENST00000324863.2	chr1	207135699:207135896:207139059:207139297:207140396:207140457,	207139060	207139297	207139176	207139177	Frame_Shift_Ins	-	T	p.R66fs
COAD	TCGA-CM-6171-01	FCAMR	ENST00000400962.3,ENST00000488345.1,ENST00000450945.2,ENST00000324852.4,ENST00000487149.1	chr1	207135699:207135896:207139059:207139203:207140396:207140457,	207139060	207139203	207139176	207139177	Frame_Shift_Ins	-	T	p.R66fs
COAD	TCGA-CM-6171-01	FCAMR	ENST00000324863.2	chr1	207135699:207135896:207139059:207139297:207140396:207140457,	207139060	207139297	207139176	207139177	Frame_Shift_Ins	-	T	p.R66fs
COAD	TCGA-A6-6653-01	FCGRT	ENST00000596975.1	chr19	50016660:50016730:50017138:50017390:50017467:50017541,50016453:50016500:50017138:50017390:50017467:50017566,50016660:50016730:50017138:50017390:50027763:50027825,	50017139	50017390	50017380	50017380	Frame_Shift_Del	G	-	p.L105fs
COAD	TCGA-A6-6653-01	FCGRT	ENST00000598936.1	chr19	50016660:50016730:50017138:50017743:50024951:50025070,	50017139	50017743	50017380	50017380	Frame_Shift_Del	G	-	p.L105fs
COAD	TCGA-AZ-6598-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000287761.6	chr5	72251897:72251956:72264324:72264416:72285253:72285328,	72264325	72264416	72264328	72264329	Frame_Shift_Ins	-	A	p.E13fs
COAD	TCGA-G4-6586-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000287761.6	chr5	72251897:72251956:72264324:72264416:72285253:72285328,	72264325	72264416	72264329	72264330	Frame_Shift_Del	AA	-	p.13_13del
COAD	TCGA-AD-5900-01	FCHSD2	ENST00000311172.7,ENST00000409853.1,ENST00000409418.4	chr11	72600873:72600990:72613587:72613683:72632872:72632995,	72613588	72613683	72613652	72613652	Frame_Shift_Del	A	-	p.L287fs
COAD	TCGA-AA-3663-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
COAD	TCGA-AA-3663-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
COAD	TCGA-AA-3663-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
COAD	TCGA-D5-6927-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
COAD	TCGA-D5-6927-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
COAD	TCGA-D5-6927-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
COAD	TCGA-AZ-6598-01	FCRL5	ENST00000497286.1,ENST00000361835.3,ENST00000356953.4	chr1	157489532:157489560:157490220:157490337:157490806:157491082,	157490221	157490337	157490289	157490289	Frame_Shift_Del	C	-	p.G855fs
COAD	TCGA-AZ-6598-01	FCRL5	ENST00000461387.1	chr1	157489532:157489560:157490220:157490351:157490806:157491082,	157490221	157490351	157490289	157490289	Frame_Shift_Del	C	-	p.G855fs
COAD	TCGA-A6-5665-01	FDPS	ENST00000368356.4	chr1	155278775:155278867:155279579:155279756:155279833:155279996,155278704:155278756:155279579:155279756:155279833:155279996,	155279580	155279756	155279644	155279644	Frame_Shift_Del	C	-	p.A21fs
COAD	TCGA-A6-5665-01	FDPS	ENST00000491013.1	chr1	155278775:155278867:155279543:155279756:155279833:155279996,155278704:155278756:155279543:155279756:155279833:155279996,	155279544	155279756	155279644	155279644	Frame_Shift_Del	C	-	p.A21fs
COAD	TCGA-CK-5916-01	FER	ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108233359:108233549:108281830:108281923:108290429:108290568,	108281831	108281923	108281887	108281887	Frame_Shift_Del	A	-	p.I431fs
COAD	TCGA-AA-3663-01	FERMT3	ENST00000279227.5,ENST00000345728.5	chr11	63987691:63987798:63987907:63988141:63988487:63988612,	63987908	63988141	63988106	63988107	Frame_Shift_Ins	-	C	p.A508fs
COAD	TCGA-AZ-6598-01	FGD3	ENST00000467786.1,ENST00000375482.3,ENST00000416701.2,ENST00000337352.6	chr9	95773495:95773554:95776133:95776280:95778018:95778111,	95776134	95776280	95776255	95776255	Frame_Shift_Del	C	-	p.T386fs
COAD	TCGA-D5-6927-01	FGD3	ENST00000467786.1,ENST00000375482.3,ENST00000416701.2,ENST00000337352.6	chr9	95773495:95773554:95776133:95776280:95778018:95778111,	95776134	95776280	95776255	95776255	Frame_Shift_Del	C	-	p.T386fs
COAD	TCGA-CM-4746-01	FGD4	ENST00000551984.1	chr12	32717070:32717223:32729199:32729383:32734893:32735185,32717070:32717223:32729199:32729383:32751430:32751520,	32729200	32729383	32729335	32729335	Frame_Shift_Del	A	-	p.E15fs
COAD	TCGA-G4-6588-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603469	95603469	Frame_Shift_Del	T	-	p.S531fs
COAD	TCGA-A6-5665-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603566	95603566	Frame_Shift_Del	T	-	p.P499fs
COAD	TCGA-AA-3492-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939823	137939823	Frame_Shift_Del	G	-	p.P23fs
COAD	TCGA-F4-6570-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939823	137939824	Frame_Shift_Del	GG	-	p.23_23del
COAD	TCGA-AZ-6598-01	FGFR2	ENST00000478859.1,ENST00000356226.4,ENST00000357555.5,ENST00000351936.6,ENST00000358487.5,ENST00000346997.2,ENST00000336553.6	chr10	123274740:123274833:123276832:123276977:123278195:123278343,123274740:123274833:123276832:123276977:123279492:123279683,	123276833	123276977	123276899	123276905	Frame_Shift_Del	ATTCCCC	-	p.338_340del
COAD	TCGA-AZ-4615-01	FGFR3	ENST00000340107.4	chr4	1805418:1805563:1806056:1806247:1806550:1806696,1804640:1804791:1806056:1806247:1806550:1806696,	1806057	1806247	1806180	1806181	Frame_Shift_Ins	-	C	p.S400fs
COAD	TCGA-F4-6703-01	FGFR4	ENST00000292410.3,ENST00000292408.4,ENST00000393648.2,ENST00000502906.1,ENST00000393637.1	chr5	176523287:176523358:176523604:176523742:176524292:176524398,	176523605	176523742	176523645	176523645	Frame_Shift_Del	G	-	p.L685fs
COAD	TCGA-DM-A28F-01	FGFR4	ENST00000292410.3,ENST00000292408.4,ENST00000393648.2,ENST00000502906.1,ENST00000393637.1	chr5	176523287:176523358:176523604:176523742:176524292:176524398,	176523605	176523742	176523730	176523731	Frame_Shift_Ins	-	C	p.C674fs
COAD	TCGA-AZ-4615-01	FGFRL1	ENST00000398484.2,ENST00000510644.1,ENST00000504138.1,ENST00000264748.6,ENST00000507339.1	chr4	1006257:1006352:1015990:1016263:1017428:1017509,	1015991	1016263	1015992	1015992	Frame_Shift_Del	C	-	p.G27fs
COAD	TCGA-AZ-6598-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.V137fs
COAD	TCGA-G4-6628-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812017	59812017	Frame_Shift_Del	G	-	p.V137fs
COAD	TCGA-A6-5661-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000589114.1,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34182636:34182731:34191914:34192058:34205473:34205712,	34191915	34192058	34191936	34191937	Frame_Shift_Ins	-	A	p.Q279fs
COAD	TCGA-F4-6806-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298333	34298334	Frame_Shift_Ins	-	C	p.P849fs
COAD	TCGA-AA-3713-01	FKBP8	ENST00000601844.1	chr19	18649203:18649246:18650180:18650269:18652488:18652805,	18650181	18650269	18650188	18650188	Frame_Shift_Del	G	-	p.Q182fs
COAD	TCGA-G4-6586-01	FKTN	ENST00000223528.2,ENST00000602526.1,ENST00000602661.1,ENST00000457847.1,ENST00000448551.2,ENST00000357998.5	chr9	108380239:108380373:108382214:108382342:108397331:108397429,	108382215	108382342	108382270	108382270	Frame_Shift_Del	T	-	p.V367fs
COAD	TCGA-F4-6570-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153588357:153588955:153589675:153589938:153590037:153590155,	153589676	153589938	153589807	153589807	Frame_Shift_Del	C	-	p.A1026fs
COAD	TCGA-AA-3713-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58095736:58095897:58097517:58097608:58097875:58098045,	58097518	58097608	58097522	58097523	Frame_Shift_Ins	-	C	p.I830fs
COAD	TCGA-A6-5661-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58110058:58110232:58111307:58111470:58112328:58112489,	58111308	58111470	58111330	58111331	Frame_Shift_Del	AT	-	p.1307_1307del
COAD	TCGA-D5-6540-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983802:2983980:2987121:2987385:2988184:2988457,	2987122	2987385	2987126	2987126	Frame_Shift_Del	C	-	p.G505fs
COAD	TCGA-AA-3713-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370419	240370419	Frame_Shift_Del	C	-	p.C769fs
COAD	TCGA-AD-6889-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370840	240370840	Frame_Shift_Del	C	-	p.P909fs
COAD	TCGA-G4-6628-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370840	240370840	Frame_Shift_Del	C	-	p.P909fs
COAD	TCGA-G4-6586-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371278	240371278	Frame_Shift_Del	C	-	p.P1055fs
COAD	TCGA-CM-4746-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371401	240371401	Frame_Shift_Del	C	-	p.I1096fs
COAD	TCGA-CK-5913-01	FN1	ENST00000346544.3,ENST00000323926.6,ENST00000336916.4,ENST00000357009.2,ENST00000345488.5,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216243927:216244040:216245533:216245803:216246934:216247048,	216245534	216245803	216245555	216245555	Frame_Shift_Del	G	-	p.L1714fs
COAD	TCGA-D5-6930-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000446046.1	chr2	216252934:216253024:216256354:216256537:216259250:216259442,	216256355	216256537	216256461	216256462	Frame_Shift_Ins	-	G	p.P1291fs
COAD	TCGA-A6-2671-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216296555:216296687:216298046:216298184:216299418:216299547,	216298047	216298184	216298127	216298130	Frame_Shift_Del	TAAG	-	p.111_112del
COAD	TCGA-CM-4743-01	FNBP4	ENST00000263773.5	chr11	47738778:47739064:47741480:47741638:47744527:47744868,	47741481	47741638	47741597	47741598	Frame_Shift_Ins	-	T	p.K949fs
COAD	TCGA-G4-6628-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000356696.3,ENST00000533034.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49178268:49178359:49179503:49179595:49186256:49186324,	49179504	49179595	49179534	49179535	Frame_Shift_Ins	-	T	p.S501fs
COAD	TCGA-G4-6320-01	FOLH1	ENST00000340334.7,ENST00000356696.3,ENST00000533034.1,ENST00000256999.2	chr11	49204700:49204794:49207220:49207407:49208195:49208320,	49207221	49207407	49207400	49207400	Frame_Shift_Del	T	-	p.N216fs
COAD	TCGA-AZ-6598-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978038	15978038	Frame_Shift_Del	T	-	p.K18fs
COAD	TCGA-AZ-6598-01	FOS	ENST00000555686.1,ENST00000303562.4	chr14	75746761:75746831:75747262:75747370:75747485:75747860,	75747263	75747370	75747284	75747284	Frame_Shift_Del	A	-	p.E138fs
COAD	TCGA-A6-6781-01	FOS	ENST00000555686.1,ENST00000303562.4	chr14	75746761:75746831:75747262:75747370:75747485:75747860,	75747263	75747370	75747303	75747303	Frame_Shift_Del	A	-	p.E145fs
COAD	TCGA-AA-3713-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878533	89878534	Frame_Shift_Ins	-	G	p.P96fs
COAD	TCGA-A6-6653-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878534	89878534	Frame_Shift_Del	G	-	p.P96fs
COAD	TCGA-A6-6781-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878534	89878534	Frame_Shift_Del	G	-	p.P96fs
COAD	TCGA-AA-3663-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108985061	108985062	Frame_Shift_Del	CT	-	p.342_342del
COAD	TCGA-AA-3663-01	FOXP4	ENST00000373060.1,ENST00000307972.4,ENST00000373057.3	chr6	41557508:41557592:41557700:41557908:41558008:41558085,	41557701	41557908	41557780	41557781	Frame_Shift_Ins	-	C	p.H410fs
COAD	TCGA-AA-3663-01	FOXP4	ENST00000409208.1,ENST00000373063.3	chr6	41557508:41557592:41557736:41557908:41558008:41558085,	41557737	41557908	41557780	41557781	Frame_Shift_Ins	-	C	p.H410fs
COAD	TCGA-AA-3713-01	FRA10AC1	ENST00000359204.4,ENST00000536233.1,ENST00000371430.2,ENST00000394100.2	chr10	95436409:95436448:95441236:95441355:95443812:95443855,	95441237	95441355	95441329	95441330	Frame_Shift_Ins	-	T	p.R232fs
COAD	TCGA-AA-3663-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79385596:79385737:79387361:79387589:79391131:79391245,	79387362	79387589	79387483	79387483	Frame_Shift_Del	G	-	p.R2384fs
COAD	TCGA-A6-6653-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
COAD	TCGA-CM-6171-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
COAD	TCGA-G4-6588-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
COAD	TCGA-CM-6162-01	FRMD4A	ENST00000378503.1,ENST00000358621.4,ENST00000357447.2,ENST00000264546.6	chr10	13708223:13708325:13712405:13712528:13716910:13717044,	13712406	13712528	13712483	13712483	Frame_Shift_Del	C	-	p.E433fs
COAD	TCGA-D5-6540-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671226	186671226	Frame_Shift_Del	A	-	p.T5820fs
COAD	TCGA-CK-5913-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672992	186672992	Frame_Shift_Del	A	-	p.E6409fs
COAD	TCGA-CM-5864-01	FSTL5	ENST00000427802.2	chr4	162402171:162402321:162421167:162421286:162459317:162459452,	162421168	162421286	162421195	162421195	Frame_Shift_Del	C	-	p.P478fs
COAD	TCGA-G4-6320-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47570301:47570439:47571471:47571651:47571805:47571894,	47571472	47571651	47571590	47571591	Frame_Shift_Ins	-	C	p.A173fs
COAD	TCGA-AD-5900-01	FUBP3	ENST00000319725.9	chr9	133501750:133501892:133506014:133506175:133506943:133507017,	133506015	133506175	133506076	133506076	Frame_Shift_Del	C	-	p.N393fs
COAD	TCGA-CM-6162-01	FUBP3	ENST00000319725.9	chr9	133501750:133501892:133506014:133506175:133506943:133507017,	133506015	133506175	133506076	133506076	Frame_Shift_Del	C	-	p.N393fs
COAD	TCGA-G4-6628-01	FUS	ENST00000487509.2,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31195181:31195323:31195529:31195717:31196259:31196500,	31195530	31195717	31195645	31195645	Frame_Shift_Del	C	-	p.N149fs
COAD	TCGA-AA-3713-01	FYN	ENST00000368682.3,ENST00000538466.1,ENST00000368678.4,ENST00000229470.5	chr6	112017502:112017659:112020717:112020873:112024087:112024189,	112020718	112020873	112020818	112020819	Frame_Shift_Ins	-	G	p.P251fs
COAD	TCGA-A6-5665-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104337481	104337482	Frame_Shift_Del	CT	-	p.350_351del
COAD	TCGA-A6-6780-01	GAA	ENST00000577106.1	chr17	78075609:78075689:78078353:78078931:78079547:78079627,78075609:78075724:78078353:78078931:78079547:78079627,	78078354	78078931	78078636	78078637	Frame_Shift_Ins	-	C	p.V84fs
COAD	TCGA-CM-4746-01	GAA	ENST00000577106.1	chr17	78075609:78075689:78078353:78078931:78079547:78079627,78075609:78075724:78078353:78078931:78079547:78079627,	78078354	78078931	78078636	78078637	Frame_Shift_Ins	-	C	p.V84fs
COAD	TCGA-D5-6540-01	GAA	ENST00000577106.1	chr17	78075609:78075689:78078353:78078931:78079547:78079627,78075609:78075724:78078353:78078931:78079547:78079627,	78078354	78078931	78078637	78078637	Frame_Shift_Del	C	-	p.V84fs
COAD	TCGA-AZ-4615-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.P512fs
COAD	TCGA-CK-5913-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.P512fs
COAD	TCGA-CK-5916-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.P512fs
COAD	TCGA-G4-6320-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.P512fs
COAD	TCGA-G4-6588-01	GALC	ENST00000544807.2,ENST00000261304.2,ENST00000555000.1,ENST00000393569.2,ENST00000393568.4,ENST00000557316.1	chr14	88407849:88407902:88411896:88412077:88414071:88414222,	88411897	88412077	88412015	88412016	Frame_Shift_Ins	-	A	p.T492fs
COAD	TCGA-AD-6895-01	GALNT2	ENST00000485438.1,ENST00000543760.1,ENST00000366672.4	chr1	230400986:230401113:230410190:230410310:230415048:230415563,	230410191	230410310	230410294	230410294	Frame_Shift_Del	A	-	p.E515fs
COAD	TCGA-AZ-6601-01	GAPDH	ENST00000396861.1,ENST00000492719.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646085:6646176:6646266:6646382:6646474:6646556,	6646267	6646382	6646278	6646278	Frame_Shift_Del	G	-	p.Q71fs
COAD	TCGA-G4-6588-01	GAPVD1	ENST00000467750.1,ENST00000497580.1,ENST00000265956.4,ENST00000495955.1,ENST00000394084.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128061200:128061385:128064261:128065105:128067341:128067428,	128064262	128065105	128064626	128064627	Frame_Shift_Ins	-	T	p.L184fs
COAD	TCGA-AD-6889-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542717	114542718	Frame_Shift_Ins	-	C	p.G150fs
COAD	TCGA-G4-6293-01	GATA6	ENST00000581694.1,ENST00000269216.3	chr18	19761413:19761539:19762717:19762805:19762900:19763004,	19762718	19762805	19762791	19762792	Frame_Shift_Ins	-	A	p.S501fs
COAD	TCGA-AD-6889-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087914	109087914	Frame_Shift_Del	T	-	p.V710fs
COAD	TCGA-D5-6928-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087914	109087914	Frame_Shift_Del	T	-	p.V710fs
COAD	TCGA-AD-6964-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000470197.1,ENST00000427862.1,ENST00000409857.3	chr2	75891770:75891909:75893054:75893179:75897263:75897340,	75893055	75893179	75893155	75893156	Frame_Shift_Ins	-	T	p.W541fs
COAD	TCGA-D5-6538-01	GCSH	ENST00000315467.3	chr16	81116427:81116568:81118067:81118199:81124205:81124285,81116427:81116568:81118067:81118199:81129735:81129845,81116427:81116568:81118067:81118199:81121205:81121269,	81118068	81118199	81118162	81118163	Frame_Shift_Ins	-	G	p.S110fs
COAD	TCGA-AM-5820-01	GEMIN5	ENST00000285873.7	chr5	154282639:154282735:154284066:154284189:154284922:154285036,	154284067	154284189	154284109	154284110	Frame_Shift_Ins	-	A	p.H863fs
COAD	TCGA-G4-6309-01	GGN	ENST00000334928.6	chr19	38874992:38875169:38876060:38877920:38878400:38878462,	38876061	38877920	38876197	38876197	Frame_Shift_Del	C	-	p.A569fs
COAD	TCGA-A6-5665-01	GHRH	ENST00000373614.2,ENST00000237527.3	chr20	35879488:35879634:35882612:35882732:35884796:35884901,	35882613	35882732	35882726	35882727	Frame_Shift_Ins	-	CT	p.S65fs
COAD	TCGA-AD-5900-01	GIPC1	ENST00000345425.2	chr19	14591404:14591590:14593500:14593818:14602467:14602555,14591404:14591590:14593500:14593818:14606848:14606864,	14593501	14593818	14593640	14593640	Frame_Shift_Del	G	-	p.P50fs
COAD	TCGA-AY-6197-01	GIPC1	ENST00000345425.2	chr19	14591404:14591590:14593500:14593818:14602467:14602555,14591404:14591590:14593500:14593818:14606848:14606864,	14593501	14593818	14593640	14593640	Frame_Shift_Del	G	-	p.P50fs
COAD	TCGA-AA-3663-01	GLIS2	ENST00000433375.1,ENST00000262366.3	chr16	4383347:4383520:4384801:4384978:4385060:4385194,	4384802	4384978	4384871	4384871	Frame_Shift_Del	G	-	p.S138fs
COAD	TCGA-A6-6780-01	GLT8D1	ENST00000481643.1,ENST00000463827.1,ENST00000407584.3,ENST00000394783.3,ENST00000266014.5,ENST00000491606.1,ENST00000478968.2	chr3	52729205:52729318:52729436:52729603:52729943:52730056,	52729437	52729603	52729510	52729511	Frame_Shift_Ins	-	A	p.V247fs
COAD	TCGA-G4-6320-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862228	4862229	Frame_Shift_Ins	-	C	p.R381fs
COAD	TCGA-AA-3492-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862229	4862229	Frame_Shift_Del	C	-	p.R381fs
COAD	TCGA-F4-6856-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862229	4862229	Frame_Shift_Del	C	-	p.R381fs
COAD	TCGA-D5-6540-01	GMPS	ENST00000496455.2,ENST00000295920.7	chr3	155637021:155637127:155639975:155640091:155643029:155643155,	155639976	155640091	155640070	155640070	Frame_Shift_Del	T	-	p.D471fs
COAD	TCGA-A6-6781-01	GNB1L	ENST00000453108.1	chr22	19799807:19799970:19808750:19808898:19841965:19842062,	19808751	19808898	19808774	19808775	Frame_Shift_Ins	-	T	p.Q35fs
COAD	TCGA-D5-6928-01	GON4L	ENST00000460075.1,ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155724165:155724279:155726748:155726868:155726970:155727114,	155726749	155726868	155726775	155726776	Frame_Shift_Ins	-	T	p.E1831fs
COAD	TCGA-G4-6586-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155736034	155736034	Frame_Shift_Del	G	-	p.P1077fs
COAD	TCGA-G4-6628-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000437809.1,ENST00000466224.1,ENST00000361040.5,ENST00000271883.5	chr1	155746185:155746272:155747412:155747611:155753776:155753880,	155747413	155747611	155747486	155747487	Frame_Shift_Del	TG	-	p.673_673del
COAD	TCGA-A6-6780-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823172	155823172	Frame_Shift_Del	T	-	p.M134fs
COAD	TCGA-D5-6930-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331702	20331703	Frame_Shift_Ins	-	C	p.E100fs
COAD	TCGA-A6-6780-01	GPAT2	ENST00000377137.3,ENST00000453542.1,ENST00000434632.1,ENST00000439254.1,ENST00000359548.4,ENST00000471757.1,ENST00000486463.1,ENST00000484440.1	chr2	96696158:96696282:96696491:96696596:96697008:96697082,	96696492	96696596	96696530	96696530	Frame_Shift_Del	G	-	p.C107fs
COAD	TCGA-AZ-6598-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120890	46120890	Frame_Shift_Del	A	-	p.N55fs
COAD	TCGA-F4-6570-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120890	46120890	Frame_Shift_Del	A	-	p.N55fs
COAD	TCGA-AD-5900-01	GPR137	ENST00000438980.2,ENST00000539851.1,ENST00000313074.3,ENST00000411458.1	chr11	64055381:64055418:64055536:64055686:64055811:64055940,	64055537	64055686	64055631	64055631	Frame_Shift_Del	C	-	p.A243fs
COAD	TCGA-A6-5661-01	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119892158:119892317:119899971:119900208:119904145:119904241,	119899972	119900208	119900114	119900115	Frame_Shift_Ins	-	C	p.V260fs
COAD	TCGA-CK-5914-01	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119892158:119892317:119899971:119900208:119904145:119904241,	119899972	119900208	119900115	119900115	Frame_Shift_Del	C	-	p.V260fs
COAD	TCGA-A6-5665-01	GPSM1	ENST00000354753.2,ENST00000440944.1	chr9	139244044:139244215:139250141:139250298:139250793:139251002,	139250142	139250298	139250155	139250155	Frame_Shift_Del	C	-	p.A490fs
COAD	TCGA-AA-3492-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109441500:109441616:109444411:109444567:109445747:109445856,	109444412	109444567	109444510	109444510	Frame_Shift_Del	A	-	p.E299fs
COAD	TCGA-AD-6895-01	GPSM2	ENST00000264126.3,ENST00000441735.1,ENST00000406462.2	chr1	109456998:109457030:109461234:109461411:109465038:109465198,	109461235	109461411	109461327	109461328	Frame_Shift_Ins	-	A	p.G452fs
COAD	TCGA-AD-5900-01	GRHL1	ENST00000439493.1	chr2	10095043:10095230:10098914:10099093:10101174:10101211,	10098915	10099093	10098920	10098921	Frame_Shift_Ins	-	AG	p.P71fs
COAD	TCGA-AD-5900-01	GRHL1	ENST00000324883.5,ENST00000464418.1,ENST00000324907.9,ENST00000405379.2,ENST00000472167.1	chr2	10095043:10095230:10098914:10098985:10101174:10101211,	10098915	10098985	10098920	10098921	Frame_Shift_Ins	-	AG	p.P71fs
COAD	TCGA-G4-6586-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257707	158257707	Frame_Shift_Del	T	-	p.V551fs
COAD	TCGA-D5-5539-01	GRIA3	ENST00000371266.1,ENST00000371264.3	chrX	122319683:122319842:122336487:122336633:122338250:122338534,	122336488	122336633	122336603	122336604	Frame_Shift_Ins	-	C	p.G128fs
COAD	TCGA-F4-6856-01	GRIN2C	ENST00000347612.4	chr17	72848212:72848750:72850832:72851246:72856571:72856658,	72850833	72851246	72850836	72850836	Frame_Shift_Del	G	-	p.K133fs
COAD	TCGA-AZ-4615-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173278	126173278	Frame_Shift_Del	G	-	p.H720fs
COAD	TCGA-F4-6856-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173278	126173278	Frame_Shift_Del	G	-	p.H720fs
COAD	TCGA-AA-3492-01	GSR	ENST00000221130.5,ENST00000541648.1,ENST00000546342.1,ENST00000537535.1,ENST00000414019.1	chr8	30538420:30538554:30539446:30539578:30541604:30541716,	30539447	30539578	30539473	30539473	Frame_Shift_Del	G	-	p.P338fs
COAD	TCGA-A6-6653-01	GSR	ENST00000520888.1,ENST00000523295.1,ENST00000541648.1,ENST00000546342.1,ENST00000537535.1,ENST00000414019.1	chr8	30567330:30567419:30569578:30569605:30585046:30585184,	30569579	30569605	30569579	30569580	Frame_Shift_Ins	-	T	p.K111fs
COAD	TCGA-D5-6930-01	GTDC1	ENST00000392871.2	chr2	144714761:144714906:144728219:144728329:144764748:144765102,144714761:144714906:144728219:144728329:144899448:144899622,144710339:144710410:144728219:144728329:144764748:144765102,	144728220	144728329	144728299	144728299	Frame_Shift_Del	A	-	p.K303fs
COAD	TCGA-AD-5900-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509009	27509009	Frame_Shift_Del	T	-	p.S767fs
COAD	TCGA-AA-3713-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509054	27509055	Frame_Shift_Del	GA	-	p.752_752del
COAD	TCGA-G4-6588-01	GTF3C5	ENST00000439697.1,ENST00000372095.5	chr9	135906404:135906551:135919114:135919313:135926169:135926283,	135919115	135919313	135919245	135919245	Frame_Shift_Del	C	-	p.I168fs
COAD	TCGA-DM-A28E-01	GTPBP8	ENST00000488781.1	chr3	112709855:112710182:112711872:112711971:112715738:112715838,	112711873	112711971	112711927	112711930	Frame_Shift_Del	TTTT	-	p.130_131del
COAD	TCGA-AM-5820-01	GTPBP8	ENST00000295864.5	chr3	112709855:112710182:112715738:112715838:112718292:112718406,	112715739	112715838	112715782	112715783	Frame_Shift_Ins	-	A	p.Q204fs
COAD	TCGA-CA-6718-01	GTSF1	ENST00000546931.1,ENST00000305879.5,ENST00000552397.1	chr12	54856954:54857081:54858850:54858951:54865016:54865061,	54858851	54858951	54858902	54858903	Frame_Shift_Ins	-	T	p.N22fs
COAD	TCGA-D5-6927-01	GUF1	ENST00000513775.1,ENST00000506793.1,ENST00000281543.5	chr4	44685251:44685335:44687975:44688040:44688526:44688730,	44687976	44688040	44688034	44688035	Frame_Shift_Ins	-	C	p.I243fs
COAD	TCGA-CM-4746-01	GYG1	ENST00000296048.6	chr3	148727062:148727189:148741839:148742059:148744546:148745134,	148741840	148742059	148741915	148741916	Frame_Shift_Del	AA	-	p.228_228del
COAD	TCGA-AZ-6598-01	GZF1	ENST00000377051.2,ENST00000338121.5	chr20	23345855:23346384:23347639:23347734:23349398:23349544,	23347640	23347734	23347653	23347654	Frame_Shift_Ins	-	A	p.E460fs
COAD	TCGA-CM-5861-01	H2AFY	ENST00000508785.1,ENST00000507868.1,ENST00000360597.4,ENST00000506671.1,ENST00000312469.4	chr5	134705725:134705832:134724611:134724816:134734751:134734867,	134724612	134724816	134724706	134724706	Frame_Shift_Del	C	-	p.R27fs
COAD	TCGA-CM-5861-01	H2AFY	ENST00000506218.1	chr5	134705725:134705832:134724611:134724986:134734751:134734867,	134724612	134724986	134724706	134724706	Frame_Shift_Del	C	-	p.R27fs
COAD	TCGA-CM-6674-01	HACE1	ENST00000369127.4,ENST00000416605.2,ENST00000517424.1,ENST00000262903.4,ENST00000517995.1	chr6	105192386:105192485:105198215:105198347:105219067:105219264,	105198216	105198347	105198277	105198277	Frame_Shift_Del	A	-	p.L761fs
COAD	TCGA-F4-6570-01	HADHA	ENST00000380649.3	chr2	26457084:26457223:26459722:26459856:26461801:26461868,	26459723	26459856	26459742	26459743	Frame_Shift_Ins	-	A	p.I99fs
COAD	TCGA-A6-5665-01	HAGH	ENST00000455446.2,ENST00000397356.3,ENST00000567190.1,ENST00000569700.1,ENST00000397353.2,ENST00000566709.1,ENST00000564518.1,ENST00000569339.1	chr16	1869897:1870015:1872300:1872365:1872865:1872905,	1872301	1872365	1872337	1872338	Frame_Shift_Ins	-	C	p.V45fs
COAD	TCGA-CM-6171-01	HCFC1	ENST00000354233.3,ENST00000310441.7,ENST00000369984.4	chrX	153219516:153220993:153221641:153221862:153222075:153222214,	153221642	153221862	153221760	153221760	Frame_Shift_Del	A	-	p.L913fs
COAD	TCGA-CK-5916-01	HCFC1	ENST00000310441.7,ENST00000369984.4	chrX	153224781:153224942:153225252:153225612:153225685:153225865,	153225253	153225612	153225330	153225330	Frame_Shift_Del	G	-	p.P456fs
COAD	TCGA-A6-5665-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073265	3073266	Frame_Shift_Ins	-	GG	p.M65fs
COAD	TCGA-A6-5665-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073265	3073266	Frame_Shift_Ins	-	GG	p.M65fs
COAD	TCGA-A6-5665-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073265	3073266	Frame_Shift_Ins	-	GG	p.M65fs
COAD	TCGA-A6-5665-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073265	3073266	Frame_Shift_Ins	-	GG	p.M65fs
COAD	TCGA-AZ-6598-01	HCST	ENST00000246551.4	chr19	36394252:36394318:36394673:36394805:36395021:36395279,	36394674	36394805	36394697	36394698	Frame_Shift_Del	CT	-	p.44_45del
COAD	TCGA-D5-6928-01	HCST	ENST00000246551.4	chr19	36394252:36394318:36394673:36394805:36395021:36395279,	36394674	36394805	36394697	36394698	Frame_Shift_Del	CT	-	p.44_45del
COAD	TCGA-AZ-6601-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000336057.5,ENST00000225983.6	chr17	42157474:42157593:42157768:42157866:42158130:42158250,	42157769	42157866	42157801	42157801	Frame_Shift_Del	G	-	p.I933fs
COAD	TCGA-CM-4743-01	HDAC6	ENST00000334136.5,ENST00000376619.2,ENST00000444343.2,ENST00000477528.1,ENST00000486227.1	chrX	48676477:48676516:48678512:48678662:48681029:48681204,48676626:48676819:48678512:48678662:48681029:48681204,	48678513	48678662	48678572	48678572	Frame_Shift_Del	G	-	p.L749fs
COAD	TCGA-G4-6586-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000401921.1,ENST00000523867.1,ENST00000461159.2	chr7	18688088:18688306:18705835:18706099:18767202:18767380,	18705836	18706099	18706029	18706035	Frame_Shift_Del	CAGTGGA	-	p.549_551del
COAD	TCGA-CM-6171-01	HDGF	ENST00000495212.1	chr1	156713954:156714140:156714799:156715165:156721134:156721288,	156714800	156715165	156715103	156715104	Frame_Shift_Ins	-	A	p.F50fs
COAD	TCGA-AA-3663-01	HDGF	ENST00000495212.1	chr1	156713954:156714140:156714799:156715165:156721134:156721288,	156714800	156715165	156715104	156715104	Frame_Shift_Del	A	-	p.F50fs
COAD	TCGA-AD-6964-01	HDGF	ENST00000495212.1	chr1	156713954:156714140:156714799:156715165:156721134:156721288,	156714800	156715165	156715104	156715104	Frame_Shift_Del	A	-	p.F50fs
COAD	TCGA-AA-3713-01	HECTD3	ENST00000484564.1,ENST00000372168.3,ENST00000487488.1,ENST00000466423.1,ENST00000372172.4	chr1	45471744:45471788:45472363:45472467:45472622:45472639,	45472364	45472467	45472400	45472400	Frame_Shift_Del	G	-	p.V564fs
COAD	TCGA-AD-5900-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197084762:197084877:197085518:197085665:197086934:197087064,	197085519	197085665	197085637	197085637	Frame_Shift_Del	C	-	p.G1392fs
COAD	TCGA-CK-5916-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197138744:197138847:197143251:197143386:197157288:197157474,	197143252	197143386	197143338	197143338	Frame_Shift_Del	G	-	p.R1017fs
COAD	TCGA-D5-6930-01	HERC2	ENST00000261609.7	chr15	28457590:28457729:28458887:28459118:28459221:28459418,	28458888	28459118	28459069	28459069	Frame_Shift_Del	C	-	p.G2202fs
COAD	TCGA-DM-A1DA-01	HERC2	ENST00000261609.7	chr15	28538033:28538168:28544547:28544662:28566507:28566610,	28544548	28544662	28544575	28544575	Frame_Shift_Del	G	-	p.Q54fs
COAD	TCGA-F4-6570-01	HERPUD1	ENST00000344114.4,ENST00000300302.5	chr16	56969153:56969224:56969315:56969387:56970598:56970729,	56969316	56969387	56969317	56969317	Frame_Shift_Del	A	-	p.E77fs
COAD	TCGA-F4-6570-01	HERPUD1	ENST00000570273.1,ENST00000439977.2,ENST00000565966.1,ENST00000569569.1,ENST00000563343.1	chr16	56969153:56969224:56969312:56969387:56970598:56970729,	56969313	56969387	56969317	56969317	Frame_Shift_Del	A	-	p.E77fs
COAD	TCGA-A6-6652-01	HERPUD1	ENST00000563781.1,ENST00000300302.5,ENST00000564678.1,ENST00000379792.2,ENST00000439977.2	chr16	56970635:56970729:56973806:56974157:56976043:56976114,56973160:56973271:56973806:56974157:56976043:56976114,	56973807	56974157	56974106	56974106	Frame_Shift_Del	C	-	p.S285fs
COAD	TCGA-A6-6652-01	HERPUD1	ENST00000568651.1	chr16	56973160:56973271:56974088:56974157:56976043:56976114,	56974089	56974157	56974106	56974106	Frame_Shift_Del	C	-	p.S285fs
COAD	TCGA-AM-5820-01	HGF	ENST00000444829.2,ENST00000222390.5	chr7	81374315:81374436:81381435:81381578:81386504:81386619,	81381436	81381578	81381573	81381573	Frame_Shift_Del	A	-	p.L163fs
COAD	TCGA-CM-4743-01	HGFAC	ENST00000511533.1	chr4	3443701:3443845:3444458:3444639:3444776:3444873,	3444459	3444639	3444594	3444594	Frame_Shift_Del	C	-	p.P84fs
COAD	TCGA-CM-6674-01	HIF1A	ENST00000394997.1	chr14	62162494:62162557:62187096:62187290:62188226:62188372,	62187097	62187290	62187170	62187171	Frame_Shift_Ins	-	T	p.V36fs
COAD	TCGA-CM-6674-01	HIF1A	ENST00000337138.4,ENST00000323441.6	chr14	62162494:62162557:62187099:62187290:62188226:62188372,	62187100	62187290	62187170	62187171	Frame_Shift_Ins	-	T	p.V36fs
COAD	TCGA-G4-6588-01	HIF3A	ENST00000529542.1	chr19	46828791:46828896:46832337:46832735:46834412:46834530,	46832338	46832735	46832495	46832495	Frame_Shift_Del	C	-	p.A491fs
COAD	TCGA-G4-6588-01	HIF3A	ENST00000600383.1,ENST00000244302.4,ENST00000420102.2,ENST00000377670.4,ENST00000300862.3,ENST00000244303.6,ENST00000291300.4,ENST00000339613.2	chr19	46828791:46828896:46832463:46832735:46834412:46834530,	46832464	46832735	46832495	46832495	Frame_Shift_Del	C	-	p.A491fs
COAD	TCGA-G4-6628-01	HIF3A	ENST00000529542.1	chr19	46828791:46828896:46832337:46832735:46834412:46834530,	46832338	46832735	46832587	46832587	Frame_Shift_Del	C	-	p.R521fs
COAD	TCGA-G4-6628-01	HIF3A	ENST00000600383.1,ENST00000244302.4,ENST00000420102.2,ENST00000377670.4,ENST00000300862.3,ENST00000244303.6,ENST00000291300.4,ENST00000339613.2	chr19	46828791:46828896:46832463:46832735:46834412:46834530,	46832464	46832735	46832587	46832587	Frame_Shift_Del	C	-	p.R521fs
COAD	TCGA-CK-5913-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33309022	33309025	Frame_Shift_Del	TGTT	-	p.354_355del
COAD	TCGA-AD-5900-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12123115	12123115	Frame_Shift_Del	A	-	p.R1029fs
COAD	TCGA-AD-6889-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091031	143091031	Frame_Shift_Del	G	-	p.S1616fs
COAD	TCGA-AA-3713-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048867	42048868	Frame_Shift_Ins	-	G	p.P534fs
COAD	TCGA-G4-6628-01	HK3	ENST00000292432.5	chr5	176318388:176318551:176323064:176323186:176326267:176326333,	176323065	176323186	176323124	176323124	Frame_Shift_Del	C	-	p.E13fs
COAD	TCGA-D5-6541-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910570	29910574	Frame_Shift_Del	CCCGG	-	p.37_38del
COAD	TCGA-AZ-4615-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910742	29910743	Frame_Shift_Del	GT	-	p.94_94del
COAD	TCGA-AM-5821-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29912029	29912029	Frame_Shift_Del	G	-	p.Q250fs
COAD	TCGA-AD-5900-01	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31322962	31322963	Frame_Shift_Ins	-	A	p.V312fs
COAD	TCGA-D5-6931-01	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31322979	31322979	Frame_Shift_Del	A	-	p.V306fs
COAD	TCGA-A6-5665-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324568	31324568	Frame_Shift_Del	C	-	p.P81fs
COAD	TCGA-A6-5665-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324568	31324568	Frame_Shift_Del	C	-	p.P81fs
COAD	TCGA-AA-3697-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
COAD	TCGA-AA-3697-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
COAD	TCGA-AM-5820-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
COAD	TCGA-AM-5820-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324601	31324602	Frame_Shift_Ins	-	G	p.E69fs
COAD	TCGA-AA-3697-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324604	31324604	Frame_Shift_Del	T	-	p.E69fs
COAD	TCGA-AA-3697-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324604	31324604	Frame_Shift_Del	T	-	p.E69fs
COAD	TCGA-AM-5820-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324604	31324604	Frame_Shift_Del	T	-	p.E69fs
COAD	TCGA-AM-5820-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324604	31324604	Frame_Shift_Del	T	-	p.E69fs
COAD	TCGA-D5-6540-01	HLA-DPB1	ENST00000428835.1,ENST00000418931.2,ENST00000416804.1	chr6	33048465:33048712:33052726:33053008:33053555:33053666,	33052727	33053008	33052934	33052934	Frame_Shift_Del	C	-	p.T191fs
COAD	TCGA-F4-6463-01	HLA-DQA1	ENST00000343139.5,ENST00000496318.1,ENST00000374949.2,ENST00000460633.1,ENST00000395363.1	chr6	32605207:32605317:32609086:32609335:32609748:32610030,	32609087	32609335	32609296	32609297	Frame_Shift_Ins	-	G	p.I98fs
COAD	TCGA-F4-6463-01	HLA-DQA1	ENST00000343139.5,ENST00000496318.1,ENST00000374949.2,ENST00000460633.1,ENST00000395363.1	chr6	32605207:32605317:32609086:32609335:32609748:32610030,	32609087	32609335	32609299	32609299	Frame_Shift_Del	A	-	p.I98fs
COAD	TCGA-G4-6588-01	HMOX1	ENST00000216117.8	chr22	35779098:35779219:35782677:35783169:35785856:35785956,	35782678	35783169	35782960	35782960	Frame_Shift_Del	G	-	p.S142fs
COAD	TCGA-AA-3713-01	HMOX2	ENST00000414777.1,ENST00000406590.2,ENST00000575120.1,ENST00000570646.1,ENST00000575051.1,ENST00000458134.3,ENST00000219700.6,ENST00000398595.3	chr16	4556895:4557013:4557713:4558205:4559412:4559431,	4557714	4558205	4557994	4557995	Frame_Shift_Ins	-	G	p.S162fs
COAD	TCGA-AD-6548-01	HNRNPC	ENST00000555309.1,ENST00000554417.1,ENST00000557201.1,ENST00000556513.1,ENST00000554539.1,ENST00000320084.7,ENST00000554383.1,ENST00000555914.1,ENST00000554455.1,ENST00000420743.2,ENST00000556897.1,ENST00000556628.1,ENST00000430246.2,ENST00000553300.1,ENST00000556142.1,ENST00000557157.1,ENST00000553753.1,ENST00000449098.1,ENST00000336053.6,ENST00000554969.1	chr14	21679968:21680082:21681118:21681276:21698477:21698525,	21681119	21681276	21681240	21681241	Frame_Shift_Ins	-	G	p.P134fs
COAD	TCGA-CK-5913-01	HP1BP3	ENST00000491748.1,ENST00000375003.2,ENST00000488722.1,ENST00000312239.5	chr1	21072084:21072149:21074036:21074148:21076215:21076240,	21074037	21074148	21074131	21074131	Frame_Shift_Del	T	-	p.T387fs
COAD	TCGA-A6-6781-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.246_246del
COAD	TCGA-A6-6781-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186986	100186987	Frame_Shift_Ins	-	G	p.M325fs
COAD	TCGA-CM-6674-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186986	100186987	Frame_Shift_Ins	-	G	p.M325fs
COAD	TCGA-AY-6197-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186987	100186987	Frame_Shift_Del	G	-	p.M325fs
COAD	TCGA-G4-6588-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186987	100186987	Frame_Shift_Del	G	-	p.M325fs
COAD	TCGA-AD-6889-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186987	100186988	Frame_Shift_Del	GG	-	p.324_325del
COAD	TCGA-AD-6895-01	HPS3	ENST00000460120.1,ENST00000296051.2,ENST00000486530.1,ENST00000462030.1	chr3	148859081:148859167:148863140:148863333:148868385:148868467,	148863141	148863333	148863159	148863160	Frame_Shift_Ins	-	A	p.G330fs
COAD	TCGA-F4-6570-01	HPX	ENST00000533856.1,ENST00000533369.1,ENST00000525057.1,ENST00000265983.3,ENST00000534800.1,ENST00000528348.1	chr11	6453135:6453247:6461696:6461768:6461901:6461954,6461394:6461516:6461696:6461768:6461901:6461954,	6461697	6461768	6461701	6461701	Frame_Shift_Del	A	-	p.K71fs
COAD	TCGA-G4-6309-01	HR	ENST00000312841.8	chr8	21984998:21985342:21986071:21986723:21987940:21988194,	21986072	21986723	21986166	21986166	Frame_Shift_Del	G	-	p.P173fs
COAD	TCGA-A6-6780-01	HSF4	ENST00000521314.1,ENST00000264009.8,ENST00000521374.1	chr16	67201415:67201502:67201622:67201850:67202733:67202786,	67201623	67201850	67201666	67201666	Frame_Shift_Del	G	-	p.P299fs
COAD	TCGA-AZ-6598-01	HSPA14	ENST00000378372.3	chr10	14890607:14890656:14890788:14890894:14891431:14891667,14890607:14890656:14890788:14890894:14891719:14891810,	14890789	14890894	14890796	14890796	Frame_Shift_Del	A	-	p.E93fs
COAD	TCGA-A6-6781-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3149731:3149934:3156019:3156146:3158798:3158926,	3156020	3156146	3156043	3156043	Frame_Shift_Del	C	-	p.N1174fs
COAD	TCGA-D5-6930-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3216836:3216938:3219491:3219679:3221908:3222035,	3219492	3219679	3219671	3219671	Frame_Shift_Del	C	-	p.V2411fs
COAD	TCGA-AA-3713-01	HYAL1	ENST00000457214.2,ENST00000320295.8,ENST00000447605.2,ENST00000266031.4,ENST00000395144.2	chr3	50337912:50338231:50338418:50338508:50339487:50339636,	50338419	50338508	50338465	50338466	Frame_Shift_Ins	-	C	p.A56fs
COAD	TCGA-AZ-6598-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220300091:220300185:220307743:220307852:220310150:220310253,	220307744	220307852	220307800	220307800	Frame_Shift_Del	T	-	p.W631fs
COAD	TCGA-AZ-6598-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924380	82924381	Frame_Shift_Ins	-	A	p.Q590fs
COAD	TCGA-D5-6540-01	ICAM5	ENST00000586480.1,ENST00000221980.4	chr19	10402164:10402485:10402710:10402998:10403287:10403542,	10402711	10402998	10402955	10402955	Frame_Shift_Del	G	-	p.L306fs
COAD	TCGA-AD-6889-01	ICOSLG	ENST00000344330.4,ENST00000407780.3,ENST00000400379.3	chr21	45655154:45655445:45656749:45657100:45658330:45658371,	45656750	45657100	45656840	45656840	Frame_Shift_Del	G	-	p.Q106fs
COAD	TCGA-CK-5916-01	ICOSLG	ENST00000344330.4,ENST00000407780.3,ENST00000400379.3	chr21	45655154:45655445:45656749:45657100:45658330:45658371,	45656750	45657100	45656840	45656840	Frame_Shift_Del	G	-	p.Q106fs
COAD	TCGA-CM-6674-01	ICOSLG	ENST00000344330.4,ENST00000407780.3,ENST00000400379.3	chr21	45655154:45655445:45656749:45657100:45658330:45658371,	45656750	45657100	45656840	45656840	Frame_Shift_Del	G	-	p.Q106fs
COAD	TCGA-DM-A1HA-01	IFI16	ENST00000430894.2,ENST00000359709.3	chr1	158985667:158985777:158988018:158988441:158990130:158990319,	158988019	158988441	158988141	158988142	Frame_Shift_Ins	-	A	p.E224fs
COAD	TCGA-AZ-6598-01	IFNGR1	ENST00000367739.4,ENST00000543628.1	chr6	137518968:137519776:137522017:137522145:137524635:137524822,	137522018	137522145	137522041	137522041	Frame_Shift_Del	T	-	p.S280fs
COAD	TCGA-A6-5665-01	IFNGR2	ENST00000545369.2,ENST00000290219.6,ENST00000439213.1,ENST00000405436.1,ENST00000381995.1	chr21	34793786:34793992:34799190:34799339:34804483:34804523,	34799191	34799339	34799292	34799292	Frame_Shift_Del	T	-	p.A171fs
COAD	TCGA-AA-3663-01	IFRD2	ENST00000483071.1,ENST00000429673.2,ENST00000336089.4,ENST00000436390.1,ENST00000474556.1,ENST00000417626.2	chr3	50326685:50326787:50326877:50327059:50327142:50327193,50326685:50326791:50326877:50327059:50327142:50327193,	50326878	50327059	50326998	50326998	Frame_Shift_Del	C	-	p.G284fs
COAD	TCGA-AA-3663-01	IFRD2	ENST00000414734.1	chr3	50326685:50326791:50326877:50327193:50327359:50327517,	50326878	50327193	50326998	50326998	Frame_Shift_Del	C	-	p.G284fs
COAD	TCGA-A6-5665-01	IFT57	ENST00000264538.3	chr3	107879658:107881502:107882509:107882576:107884277:107884340,	107882510	107882576	107882550	107882550	Frame_Shift_Del	T	-	p.Q358fs
COAD	TCGA-AA-3663-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1,ENST00000382778.4	chr13	21199888:21199988:21205154:21205241:21212470:21212657,	21205155	21205241	21205180	21205180	Frame_Shift_Del	A	-	p.E442fs
COAD	TCGA-AZ-6598-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1,ENST00000382778.4,ENST00000482172.1	chr13	21237636:21237743:21245111:21245178:21264843:21264954,	21245112	21245178	21245138	21245139	Frame_Shift_Ins	-	G	p.S734fs
COAD	TCGA-CM-5861-01	IGF1R	ENST00000558762.1,ENST00000559925.1,ENST00000268035.6,ENST00000558898.1	chr15	99439985:99440134:99442705:99442850:99451913:99452128,	99442706	99442850	99442809	99442809	Frame_Shift_Del	A	-	p.L402fs
COAD	TCGA-AD-6901-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485487	160485488	Frame_Shift_Ins	-	G	p.T1314fs
COAD	TCGA-AZ-6598-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485487	160485488	Frame_Shift_Ins	-	G	p.T1314fs
COAD	TCGA-AU-6004-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485488	Frame_Shift_Del	G	-	p.T1314fs
COAD	TCGA-F4-6570-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485488	Frame_Shift_Del	G	-	p.T1314fs
COAD	TCGA-G4-6588-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485488	Frame_Shift_Del	G	-	p.T1314fs
COAD	TCGA-AA-3492-01	IGFN1	ENST00000437879.2,ENST00000451870.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201182633:201182749:201183304:201183429:201184140:201184282,	201183305	201183429	201183354	201183354	Frame_Shift_Del	G	-	p.P2926fs
COAD	TCGA-CK-5913-01	IGLL1	ENST00000330377.2	chr22	23915555:23915772:23917153:23917269:23922171:23922426,	23917154	23917269	23917218	23917218	Frame_Shift_Del	C	-	p.F87fs
COAD	TCGA-CK-5913-01	IGLL1	ENST00000438703.1	chr22	23915555:23915772:23917153:23917272:23922171:23922426,	23917154	23917272	23917218	23917218	Frame_Shift_Del	C	-	p.F87fs
COAD	TCGA-F4-6570-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898714	159898714	Frame_Shift_Del	C	-	p.D806fs
COAD	TCGA-CM-6162-01	IGSF9	ENST00000361509.3	chr1	159902301:159902442:159903979:159904074:159904214:159904360,	159903980	159904074	159904032	159904032	Frame_Shift_Del	G	-	p.P335fs
COAD	TCGA-CM-6162-01	IGSF9	ENST00000476102.1,ENST00000368094.1	chr1	159902301:159902442:159903979:159904122:159904214:159904360,	159903980	159904122	159904032	159904032	Frame_Shift_Del	G	-	p.P335fs
COAD	TCGA-AM-5820-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912845	159912846	Frame_Shift_Ins	-	G	p.L52fs
COAD	TCGA-D5-6928-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912845	159912846	Frame_Shift_Ins	-	G	p.L52fs
COAD	TCGA-AD-6889-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790373	133790374	Frame_Shift_Ins	-	G	p.T1083fs
COAD	TCGA-AZ-6598-01	IL21R	ENST00000395755.1,ENST00000564089.1,ENST00000395754.4,ENST00000337929.3	chr16	27441376:27441441:27445667:27445770:27448808:27449008,	27445668	27445770	27445678	27445678	Frame_Shift_Del	C	-	p.C42fs
COAD	TCGA-CM-4743-01	IL21R	ENST00000395755.1,ENST00000564089.1,ENST00000395754.4,ENST00000337929.3	chr16	27448808:27449008:27454282:27454437:27455862:27456011,	27454283	27454437	27454294	27454294	Frame_Shift_Del	C	-	p.A143fs
COAD	TCGA-AD-6895-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
COAD	TCGA-G4-6294-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105173873	105173873	Frame_Shift_Del	A	-	p.P423fs
COAD	TCGA-AY-6197-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174013	105174013	Frame_Shift_Del	C	-	p.A470fs
COAD	TCGA-A6-6780-01	INO80E	ENST00000304516.7	chr16	30012078:30012157:30012249:30012361:30012734:30012851,30012078:30012157:30012249:30012361:30016541:30016644,	30012250	30012361	30012268	30012268	Frame_Shift_Del	G	-	p.L101fs
COAD	TCGA-A6-6653-01	INPP5B	ENST00000373026.1,ENST00000373023.2,ENST00000373027.1,ENST00000373024.3	chr1	38328011:38328102:38329983:38330095:38331432:38331560,	38329984	38330095	38330037	38330037	Frame_Shift_Del	A	-	p.L858fs
COAD	TCGA-AZ-6603-01	INPP5F	ENST00000361976.2	chr10	121565871:121565992:121567443:121567572:121569611:121569729,	121567444	121567572	121567447	121567447	Frame_Shift_Del	A	-	p.L481fs
COAD	TCGA-G4-6628-01	INSIG2	ENST00000467223.1,ENST00000485520.1,ENST00000411929.1,ENST00000245787.4,ENST00000479999.1	chr2	118864312:118864479:118864665:118864765:118865856:118865948,	118864666	118864765	118864714	118864715	Frame_Shift_Ins	-	T	p.I195fs
COAD	TCGA-CK-5916-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000440600.2	chr1	212118125:212118311:212119948:212120047:212125910:212126043,	212119949	212120047	212119977	212119977	Frame_Shift_Del	A	-	p.F782fs
COAD	TCGA-CK-5916-01	INTS7	ENST00000366992.3	chr1	212118125:212118311:212119948:212119987:212125910:212126043,	212119949	212119987	212119977	212119977	Frame_Shift_Del	A	-	p.F782fs
COAD	TCGA-G4-6586-01	INTS7	ENST00000366994.3,ENST00000366992.3,ENST00000366993.3	chr1	212190227:212190365:212193463:212193610:212194424:212194554,	212193464	212193610	212193510	212193510	Frame_Shift_Del	A	-	p.S109fs
COAD	TCGA-AZ-4615-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95861689:95861760:95862143:95862319:95863780:95863914,	95862144	95862319	95862281	95862282	Frame_Shift_Del	TG	-	p.490_490del
COAD	TCGA-D5-6927-01	IP6K1	ENST00000395238.1,ENST00000321599.4,ENST00000460540.1,ENST00000468463.1	chr3	49765535:49765711:49770223:49770405:49775644:49775855,	49770224	49770405	49770391	49770392	Frame_Shift_Del	TT	-	p.150_150del
COAD	TCGA-G4-6304-01	IQCA1	ENST00000309507.5,ENST00000409907.3,ENST00000418802.1,ENST00000465621.1,ENST00000254653.5	chr2	237308055:237308131:237327791:237327914:237349682:237349767,	237327792	237327914	237327821	237327822	Frame_Shift_Ins	-	T	p.Q369fs
COAD	TCGA-AZ-4315-01	IQCH	ENST00000514049.1	chr15	67547185:67547285:67553609:67553732:67636400:67636525,	67553610	67553732	67553664	67553665	Frame_Shift_Ins	-	A	p.E36fs
COAD	TCGA-CK-5913-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156503800:156503933:156504292:156504525:156504954:156505039,	156504293	156504525	156504420	156504420	Frame_Shift_Del	G	-	p.Q1205fs
COAD	TCGA-AA-3713-01	IRAK1	ENST00000369980.3,ENST00000369973.3	chrX	153277309:153277368:153278493:153278884:153279492:153279555,153278035:153278129:153278493:153278884:153281482:153281524,153278035:153278129:153278493:153278884:153279492:153279555,	153278494	153278884	153278805	153278805	Frame_Shift_Del	G	-	p.P461fs
COAD	TCGA-AZ-4615-01	IRAK4	ENST00000431837.1,ENST00000550615.1	chr12	44152769:44152819:44161905:44162075:44164840:44164907,44152769:44152819:44161905:44162075:44165982:44166165,	44161906	44162075	44162031	44162032	Frame_Shift_Ins	-	A	p.I39fs
COAD	TCGA-A6-5665-01	IRAK4	ENST00000551736.1,ENST00000448290.2	chr12	44161905:44162075:44165022:44165168:44165982:44166165,	44165023	44165168	44165050	44165050	Frame_Shift_Del	A	-	p.G63fs
COAD	TCGA-F4-6856-01	IREB2	ENST00000258886.8,ENST00000558570.1	chr15	78782763:78782868:78782960:78783103:78786250:78786398,	78782961	78783103	78783023	78783024	Frame_Shift_Del	CT	-	p.748_748del
COAD	TCGA-D5-6927-01	IRF1	ENST00000405885.2,ENST00000245414.4	chr5	131818777:131819767:131820053:131820189:131821358:131821408,	131820054	131820189	131820142	131820142	Frame_Shift_Del	C	-	p.Y256fs
COAD	TCGA-D5-6930-01	ISM2	ENST00000393684.3,ENST00000429906.1,ENST00000342219.4,ENST00000216481.6	chr14	77944917:77945058:77948664:77949010:77950665:77950908,	77948665	77949010	77948699	77948699	Frame_Shift_Del	G	-	p.G314fs
COAD	TCGA-A6-6653-01	ITGA10	ENST00000468261.1,ENST00000369304.3	chr1	145527612:145527724:145527927:145528037:145528253:145528345,	145527928	145528037	145527942	145527942	Frame_Shift_Del	C	-	p.A60fs
COAD	TCGA-CK-5916-01	ITGA3	ENST00000544892.1,ENST00000506401.2,ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48148674:48148882:48149349:48149546:48151279:48151368,	48149350	48149546	48149405	48149405	Frame_Shift_Del	G	-	p.V338fs
COAD	TCGA-AZ-6598-01	ITGA4	ENST00000397033.2,ENST00000465522.1,ENST00000233573.6	chr2	182343483:182343551:182344863:182344993:182346324:182346410,	182344864	182344993	182344950	182344950	Frame_Shift_Del	T	-	p.A237fs
COAD	TCGA-CM-6674-01	ITGAL	ENST00000563615.1,ENST00000358164.5,ENST00000356798.6	chr16	30516709:30516783:30518035:30518177:30521681:30521716,	30518036	30518177	30518138	30518138	Frame_Shift_Del	C	-	p.F823fs
COAD	TCGA-D5-6930-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73744921:73745126:73746191:73746349:73746760:73746871,	73746192	73746349	73746239	73746239	Frame_Shift_Del	C	-	p.P1121fs
COAD	TCGA-D5-6928-01	ITGB5	ENST00000481591.1,ENST00000296181.4,ENST00000476988.2	chr3	124527868:124528003:124538585:124538681:124540159:124540305,124536467:124536557:124538585:124538681:124540159:124540305,	124538586	124538681	124538604	124538605	Frame_Shift_Ins	-	T	p.N340fs
COAD	TCGA-AZ-4615-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
COAD	TCGA-AZ-4615-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
COAD	TCGA-D5-6930-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
COAD	TCGA-D5-6930-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
COAD	TCGA-AU-6004-01	JAG2	ENST00000347004.2,ENST00000331782.3	chr14	105615506:105615657:105616940:105617114:105617201:105617248,	105616941	105617114	105617086	105617087	Frame_Shift_Del	CA	-	p.448_448del
COAD	TCGA-AD-6889-01	JAG2	ENST00000331782.3	chr14	105616940:105617114:105617201:105617248:105617327:105617441,	105617202	105617248	105617212	105617212	Frame_Shift_Del	C	-	p.G435fs
COAD	TCGA-CK-5913-01	JAK3	ENST00000527031.1,ENST00000534444.1,ENST00000458235.1,ENST00000526008.1,ENST00000527670.1	chr19	17954188:17954300:17954585:17954709:17955042:17955187,	17954586	17954709	17954643	17954643	Frame_Shift_Del	G	-	p.P84fs
COAD	TCGA-A6-5665-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018467	134018468	Frame_Shift_Ins	-	G	p.I195fs
COAD	TCGA-AA-3492-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018468	134018468	Frame_Shift_Del	G	-	p.I195fs
COAD	TCGA-AZ-6598-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496721	15496722	Frame_Shift_Ins	-	G	p.V422fs
COAD	TCGA-F4-6856-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
COAD	TCGA-AY-6197-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15497226	15497226	Frame_Shift_Del	C	-	p.I590fs
COAD	TCGA-F4-6856-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	711132	711133	Frame_Shift_Ins	-	C	p.P122fs
COAD	TCGA-G4-6309-01	KANSL1	ENST00000577114.1,ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1	chr17	44159806:44159908:44171925:44172067:44248220:44248306,	44171926	44172067	44172046	44172046	Frame_Shift_Del	T	-	p.W438fs
COAD	TCGA-CM-6171-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248710	44248710	Frame_Shift_Del	T	-	p.K267fs
COAD	TCGA-F4-6856-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248731	44248731	Frame_Shift_Del	C	-	p.G260fs
COAD	TCGA-CM-6162-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248974	44248974	Frame_Shift_Del	C	-	p.G179fs
COAD	TCGA-AA-3713-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192128	211192129	Frame_Shift_Ins	-	CT	p.S343fs
COAD	TCGA-AD-5900-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192509	211192509	Frame_Shift_Del	A	-	p.K217fs
COAD	TCGA-AD-5900-01	KCNH1	ENST00000367007.4	chr1	211092981:211093411:211192205:211192598:211256121:211256240,	211192206	211192598	211192509	211192509	Frame_Shift_Del	A	-	p.K217fs
COAD	TCGA-G4-6302-01	KCNH4	ENST00000607371.1	chr17	40308912:40309136:40311752:40312453:40314265:40314339,	40311753	40312453	40312169	40312169	Frame_Shift_Del	G	-	p.Y982fs
COAD	TCGA-G4-6302-01	KCNH4	ENST00000264661.3	chr17	40308912:40309136:40311748:40312453:40314265:40314339,	40311749	40312453	40312169	40312169	Frame_Shift_Del	G	-	p.Y982fs
COAD	TCGA-AA-3492-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328259	40328259	Frame_Shift_Del	C	-	p.S215fs
COAD	TCGA-AU-6004-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36766828:36767053:36768447:36768637:36776340:36776415,	36768448	36768637	36768518	36768518	Frame_Shift_Del	C	-	p.S801fs
COAD	TCGA-AA-3663-01	KCTD1	ENST00000417602.1,ENST00000317932.7,ENST00000580059.1,ENST00000580191.1,ENST00000408011.3,ENST00000580638.1,ENST00000579973.1	chr18	24039780:24039889:24056478:24056623:24081035:24081209,	24056479	24056623	24056585	24056585	Frame_Shift_Del	A	-	p.L76fs
COAD	TCGA-AA-3492-01	KCTD13	ENST00000563264.1,ENST00000566842.1,ENST00000308768.5,ENST00000568995.1,ENST00000568000.1	chr16	29923135:29923188:29923280:29923370:29934510:29934558,	29923281	29923370	29923364	29923364	Frame_Shift_Del	T	-	p.R141fs
COAD	TCGA-G4-6628-01	KCTD3	ENST00000259154.4	chr1	215753251:215753342:215759837:215760028:215768697:215768813,	215759838	215760028	215760007	215760007	Frame_Shift_Del	G	-	p.D265fs
COAD	TCGA-AD-5900-01	KCTD9	ENST00000519665.1,ENST00000221200.4	chr8	25286777:25287489:25290019:25290153:25290845:25290951,	25290020	25290153	25290078	25290078	Frame_Shift_Del	T	-	p.N332fs
COAD	TCGA-A6-6780-01	KDM2A	ENST00000531696.1,ENST00000529006.2,ENST00000398645.2,ENST00000526258.1	chr11	66985226:66985355:66986758:66986874:66995507:66995634,	66986759	66986874	66986811	66986811	Frame_Shift_Del	T	-	p.N298fs
COAD	TCGA-AZ-4615-01	KDM2B	ENST00000542973.1,ENST00000377071.4	chr12	121879959:121880639:121880794:121880833:121881482:121881596,	121880795	121880833	121880796	121880796	Frame_Shift_Del	T	-	p.K868fs
COAD	TCGA-DM-A1D8-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727666	137727667	Frame_Shift_Ins	-	G	p.D782fs
COAD	TCGA-CM-6674-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503458	32503459	Frame_Shift_Ins	-	G	p.R310fs
COAD	TCGA-CM-6674-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503458	32503459	Frame_Shift_Ins	-	G	p.R310fs
COAD	TCGA-A6-6653-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503533	32503533	Frame_Shift_Del	C	-	p.P334fs
COAD	TCGA-A6-6653-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503533	32503533	Frame_Shift_Del	C	-	p.P334fs
COAD	TCGA-AY-6197-01	KIAA0319	ENST00000543707.1	chr6	24596100:24596846:24601276:24601436:24645963:24646383,24596664:24596846:24601276:24601436:24645854:24646249,	24601277	24601436	24601320	24601320	Frame_Shift_Del	G	-	p.T5fs
COAD	TCGA-D5-6927-01	KIAA0319L	ENST00000325722.3,ENST00000482929.2,ENST00000426982.2,ENST00000478463.2,ENST00000440579.1,ENST00000469892.1	chr1	35944660:35944813:35972212:35972736:36019950:36020120,	35972213	35972736	35972479	35972480	Frame_Shift_Ins	-	T	p.F134fs
COAD	TCGA-AZ-6598-01	KIAA0319L	ENST00000325722.3,ENST00000482929.2,ENST00000426982.2,ENST00000478463.2,ENST00000440579.1,ENST00000469892.1	chr1	35944660:35944813:35972212:35972736:36019950:36020120,	35972213	35972736	35972480	35972480	Frame_Shift_Del	T	-	p.F134fs
COAD	TCGA-F4-6570-01	KIAA0319L	ENST00000325722.3,ENST00000482929.2,ENST00000426982.2,ENST00000478463.2,ENST00000440579.1,ENST00000469892.1	chr1	35944660:35944813:35972212:35972736:36019950:36020120,	35972213	35972736	35972480	35972480	Frame_Shift_Del	T	-	p.F134fs
COAD	TCGA-AA-3663-01	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27751682	27751683	Frame_Shift_Ins	-	A	p.R688fs
COAD	TCGA-G4-6586-01	KIAA0556	ENST00000261588.4	chr16	27751361:27752241:27760904:27761627:27763039:27763245,	27760905	27761627	27761013	27761013	Frame_Shift_Del	G	-	p.R911fs
COAD	TCGA-AD-6964-01	KIAA0825	ENST00000513200.3,ENST00000329378.7,ENST00000427991.2,ENST00000312498.7	chr5	93855952:93856622:93859634:93859803:93872700:93872831,	93859635	93859803	93859758	93859761	Frame_Shift_Del	TTGT	-	p.59_60del
COAD	TCGA-DM-A1D6-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373702	36373703	Frame_Shift_Ins	-	T	p.H354fs
COAD	TCGA-AA-3713-01	KIAA1217	ENST00000438429.1	chr10	24544256:24544525:24669797:24669996:24721923:24722122,24508554:24508838:24669797:24669996:24721923:24722122,24528123:24528266:24669797:24669996:24721923:24722122,	24669798	24669996	24669902	24669902	Frame_Shift_Del	G	-	p.E153fs
COAD	TCGA-CM-6680-01	KIAA1324L	ENST00000394714.2,ENST00000297222.6,ENST00000444627.1,ENST00000450689.2,ENST00000416314.1	chr7	86509392:86509846:86521039:86521205:86522237:86522251,	86521040	86521205	86521048	86521048	Frame_Shift_Del	C	-	p.A841fs
COAD	TCGA-D5-6540-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236487	33236487	Frame_Shift_Del	C	-	p.R569fs
COAD	TCGA-G4-6588-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237879	33237879	Frame_Shift_Del	C	-	p.V1033fs
COAD	TCGA-CM-4743-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138602056	138602056	Frame_Shift_Del	G	-	p.G773fs
COAD	TCGA-AA-3663-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603524	138603524	Frame_Shift_Del	A	-	p.L283fs
COAD	TCGA-G4-6628-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138604003	138604003	Frame_Shift_Del	A	-	p.N124fs
COAD	TCGA-CK-5916-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968606	5968606	Frame_Shift_Del	T	-	p.N542fs
COAD	TCGA-AA-3663-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5968176:5969436:5988344:5988545:6007194:6007364,	5988345	5988545	5988346	5988346	Frame_Shift_Del	T	-	p.R265fs
COAD	TCGA-AZ-4615-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788022	17788023	Frame_Shift_Ins	-	T	p.V1103fs
COAD	TCGA-G4-6320-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837308	17837308	Frame_Shift_Del	C	-	p.G319fs
COAD	TCGA-DM-A1D4-01	KIF1A	ENST00000404283.3,ENST00000498729.2	chr2	241689845:241689964:241696735:241697011:241697776:241697910,	241696736	241697011	241696754	241696755	Frame_Shift_Ins	-	G	p.L947fs
COAD	TCGA-A6-5665-01	KIF21A	ENST00000552961.1	chr12	39705218:39705355:39709733:39709772:39713707:39713815,	39709734	39709772	39709745	39709746	Frame_Shift_Ins	-	GA	p.S1312fs
COAD	TCGA-F4-6856-01	KIF21A	ENST00000551264.1	chr12	39705218:39705355:39713707:39713815:39716469:39716684,	39713708	39713815	39713784	39713784	Frame_Shift_Del	T	-	p.I1215fs
COAD	TCGA-AZ-6598-01	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745580	39745580	Frame_Shift_Del	T	-	p.S558fs
COAD	TCGA-A6-6780-01	KIF26A	ENST00000423312.2,ENST00000315264.7	chr14	104605379:104605625:104618351:104618798:104624091:104624279,	104618352	104618798	104618524	104618524	Frame_Shift_Del	C	-	p.A154fs
COAD	TCGA-CK-5916-01	KIF26A	ENST00000423312.2,ENST00000315264.7	chr14	104618351:104618798:104624091:104624279:104633195:104633385,	104624092	104624279	104624142	104624142	Frame_Shift_Del	C	-	p.C262fs
COAD	TCGA-G4-6586-01	KIF2A	ENST00000407818.3	chr5	61662240:61662308:61668264:61668378:61669513:61669664,	61668265	61668378	61668359	61668359	Frame_Shift_Del	T	-	p.D580fs
COAD	TCGA-AA-3492-01	KIF2A	ENST00000381103.2,ENST00000407818.3,ENST00000401507.3,ENST00000506857.1	chr5	61673487:61673589:61676944:61677080:61681310:61681455,	61676945	61677080	61676970	61676970	Frame_Shift_Del	A	-	p.E623fs
COAD	TCGA-G4-6586-01	KIF5C	ENST00000464066.1,ENST00000414838.2,ENST00000435030.1,ENST00000397413.1,ENST00000482151.1	chr2	149857235:149857296:149861906:149861978:149864476:149864581,	149861907	149861978	149861973	149861973	Frame_Shift_Del	A	-	p.V813fs
COAD	TCGA-AU-6004-01	KIFAP3	ENST00000538366.1	chr1	170015852:170016007:170024445:170024577:170043576:170043729,	170024446	170024577	170024446	170024447	Frame_Shift_Ins	-	T	p.I55fs
COAD	TCGA-AA-3713-01	KIFAP3	ENST00000538366.1	chr1	170015852:170016007:170024445:170024577:170043576:170043729,	170024446	170024577	170024447	170024447	Frame_Shift_Del	T	-	p.I55fs
COAD	TCGA-A6-5665-01	KLF7	ENST00000423015.1	chr2	207953181:207953305:207988699:207989128:208030190:208030295,	207988700	207989128	207988762	207988763	Frame_Shift_Ins	-	AG	p.A157fs
COAD	TCGA-CK-5916-01	KLHDC3	ENST00000326974.4	chr6	42984871:42985084:42985590:42985706:42985882:42985954,42985276:42985433:42985590:42985706:42985882:42985954,	42985591	42985706	42985660	42985660	Frame_Shift_Del	G	-	p.C119fs
COAD	TCGA-A6-6781-01	KLHDC4	ENST00000566349.1,ENST00000353170.5,ENST00000567298.1,ENST00000347925.5,ENST00000270583.5,ENST00000562155.1	chr16	87741955:87742072:87742870:87743273:87744840:87745049,	87742871	87743273	87743084	87743084	Frame_Shift_Del	G	-	p.R412fs
COAD	TCGA-A6-5665-01	KLHDC4	ENST00000566349.1,ENST00000353170.5,ENST00000567298.1,ENST00000347925.5,ENST00000270583.5,ENST00000562155.1	chr16	87741955:87742072:87742870:87743273:87744840:87745049,	87742871	87743273	87743238	87743239	Frame_Shift_Ins	-	C	p.G360fs
COAD	TCGA-A6-6780-01	KLHL24	ENST00000242810.6,ENST00000454652.2	chr3	183361267:183361330:183368083:183369064:183381245:183381430,	183368084	183369064	183368259	183368259	Frame_Shift_Del	T	-	p.E38fs
COAD	TCGA-CM-4743-01	KLHL5	ENST00000359687.2,ENST00000515612.1	chr4	39114639:39114852:39116778:39116950:39122629:39122825,39114639:39114852:39116778:39116950:39128313:39128415,	39116779	39116950	39116842	39116842	Frame_Shift_Del	G	-	p.V514fs
COAD	TCGA-A6-5665-01	KLHL5	ENST00000359687.2,ENST00000515612.1	chr4	39114639:39114852:39116778:39116950:39122629:39122825,39114639:39114852:39116778:39116950:39128313:39128415,	39116779	39116950	39116878	39116879	Frame_Shift_Ins	-	G	p.V667fs
COAD	TCGA-AA-3663-01	KLK12	ENST00000530943.2,ENST00000250352.11,ENST00000529888.1,ENST00000526824.1	chr19	51532597:51532713:51534043:51534177:51537235:51537395,	51534044	51534177	51534059	51534059	Frame_Shift_Del	C	-	p.Q193fs
COAD	TCGA-CK-5916-01	KLRD1	ENST00000381908.3	chr12	10462224:10462287:10464062:10464214:10466005:10466112,	10464063	10464214	10464086	10464087	Frame_Shift_Ins	-	A	p.E63fs
COAD	TCGA-AD-6964-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753557	241753558	Frame_Shift_Ins	-	A	p.Q418fs
COAD	TCGA-AA-3663-01	KPNA3	ENST00000261667.3	chr13	50276521:50276616:50279756:50279919:50280233:50280305,	50279757	50279919	50279819	50279819	Frame_Shift_Del	T	-	p.N437fs
COAD	TCGA-AZ-6598-01	KPNA3	ENST00000261667.3	chr13	50276521:50276616:50279756:50279919:50280233:50280305,	50279757	50279919	50279819	50279819	Frame_Shift_Del	T	-	p.N437fs
COAD	TCGA-A6-6140-01	KPNA5	ENST00000413340.1,ENST00000368564.1,ENST00000356348.1	chr6	117010482:117010616:117013217:117013319:117013455:117013555,	117013218	117013319	117013257	117013258	Frame_Shift_Ins	-	A	p.E60fs
COAD	TCGA-F4-6570-01	KPTN	ENST00000598699.1	chr19	47986551:47986636:47986758:47986841:47987191:47987270,47986551:47986636:47986758:47986841:47987085:47987151,	47986759	47986841	47986795	47986795	Frame_Shift_Del	G	-	p.K92fs
COAD	TCGA-CM-6169-01	KRT13	ENST00000587544.1,ENST00000590425.1,ENST00000468313.1,ENST00000336861.3,ENST00000464634.2	chr17	39659538:39659695:39659894:39659977:39661307:39661487,	39659895	39659977	39659935	39659936	Frame_Shift_Del	TC	-	p.180_180del
COAD	TCGA-A6-5665-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000553360.1,ENST00000395314.3,ENST00000459737.1,ENST00000554570.1,ENST00000554306.1,ENST00000395308.1,ENST00000395311.1	chr14	56125263:56125332:56126383:56126421:56128239:56128304,	56126384	56126421	56126395	56126396	Frame_Shift_Ins	-	C	p.F991fs
COAD	TCGA-AD-6889-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000553360.1,ENST00000395314.3,ENST00000459737.1,ENST00000554570.1,ENST00000554306.1,ENST00000395308.1,ENST00000395311.1	chr14	56125263:56125332:56126383:56126421:56128239:56128304,	56126384	56126421	56126396	56126396	Frame_Shift_Del	C	-	p.F991fs
COAD	TCGA-AA-3697-01	KYNU	ENST00000264170.4,ENST00000409512.1	chr2	143787195:143787248:143790804:143790890:143797996:143798227,	143790805	143790890	143790841	143790842	Frame_Shift_Del	TT	-	p.331_331del
COAD	TCGA-G4-6309-01	L3MBTL1	ENST00000468336.1,ENST00000430781.2,ENST00000427442.2,ENST00000418998.1,ENST00000444063.1,ENST00000473981.1,ENST00000373134.1,ENST00000373135.3	chr20	42143347:42143416:42143648:42143799:42143931:42144055,	42143649	42143799	42143689	42143689	Frame_Shift_Del	C	-	p.D91fs
COAD	TCGA-CK-5916-01	L3MBTL4	ENST00000535782.1,ENST00000317931.7	chr18	5960092:5960155:5969391:5969561:6080879:6080950,	5969392	5969561	5969488	5969488	Frame_Shift_Del	A	-	p.R516fs
COAD	TCGA-AA-3713-01	LACTB2	ENST00000276590.4,ENST00000522447.1	chr8	71556299:71556478:71569990:71570117:71573968:71574132,	71569991	71570117	71570094	71570095	Frame_Shift_Ins	-	T	p.L104fs
COAD	TCGA-F4-6570-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826416	129826417	Frame_Shift_Ins	-	A	p.P2869fs
COAD	TCGA-A6-6781-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826417	129826417	Frame_Shift_Del	A	-	p.P2869fs
COAD	TCGA-G4-6588-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21447797:21447881:21451394:21451625:21456257:21456371,	21451395	21451625	21451595	21451595	Frame_Shift_Del	C	-	p.C1656fs
COAD	TCGA-CM-6171-01	LAMA3	ENST00000586751.1,ENST00000313654.9,ENST00000269217.6,ENST00000588770.1	chr18	21479251:21479419:21481090:21481287:21482972:21483089,	21481091	21481287	21481128	21481128	Frame_Shift_Del	G	-	p.Q349fs
COAD	TCGA-D5-6540-01	LAMA5	ENST00000252999.3	chr20	60902584:60902725:60902921:60903066:60903296:60903501,	60902922	60903066	60903002	60903002	Frame_Shift_Del	G	-	p.R1573fs
COAD	TCGA-AA-3713-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564774	107564774	Frame_Shift_Del	T	-	p.T1709fs
COAD	TCGA-A6-6780-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
COAD	TCGA-A6-6780-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
COAD	TCGA-AZ-6598-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
COAD	TCGA-AZ-6598-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
COAD	TCGA-AD-6895-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181822	154181822	Frame_Shift_Del	G	-	p.P580fs
COAD	TCGA-D5-6928-01	LARP4	ENST00000429001.3	chr12	50821547:50821692:50822699:50822873:50824277:50824334,	50822700	50822873	50822829	50822829	Frame_Shift_Del	T	-	p.I93fs
COAD	TCGA-D5-6928-01	LARP4	ENST00000552445.1,ENST00000398473.2,ENST00000522085.1,ENST00000517559.1,ENST00000548993.1,ENST00000347328.5,ENST00000550522.1,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50821547:50821692:50822717:50822873:50824277:50824334,	50822718	50822873	50822829	50822829	Frame_Shift_Del	T	-	p.I93fs
COAD	TCGA-AD-6964-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000522085.1,ENST00000521120.1,ENST00000520064.2,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50835372:50835426:50847242:50847455:50848096:50848200,	50847243	50847455	50847266	50847267	Frame_Shift_Ins	-	T	p.T276fs
COAD	TCGA-CK-5913-01	LARP4	ENST00000347328.5	chr12	50835372:50835426:50848096:50848200:50854917:50855130,	50848097	50848200	50848191	50848191	Frame_Shift_Del	A	-	p.Q300fs
COAD	TCGA-AA-3663-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
COAD	TCGA-CM-5861-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
COAD	TCGA-D5-6930-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
COAD	TCGA-G4-6588-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
COAD	TCGA-AD-6964-01	LARS	ENST00000510191.1,ENST00000394434.2,ENST00000503654.1	chr5	145547791:145547828:145551472:145551553:145552249:145552337,	145551473	145551553	145551521	145551521	Frame_Shift_Del	T	-	p.C83fs
COAD	TCGA-AZ-6598-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150004239	150004239	Frame_Shift_Del	T	-	p.Q663fs
COAD	TCGA-D5-6540-01	LCLAT1	ENST00000540623.1,ENST00000379509.3,ENST00000491680.2,ENST00000309052.4,ENST00000478015.1	chr2	30785011:30785158:30790925:30791042:30862982:30863696,	30790926	30791042	30790959	30790959	Frame_Shift_Del	A	-	p.E182fs
COAD	TCGA-A6-6653-01	LDB3	ENST00000372056.4,ENST00000429277.2	chr10	88439838:88439914:88441192:88441560:88451652:88451822,88439838:88439914:88441192:88441560:88445434:88445457,88439838:88439914:88441192:88441560:88446825:88447029,	88441193	88441560	88441396	88441396	Frame_Shift_Del	G	-	p.E175fs
COAD	TCGA-D5-6540-01	LDHA	ENST00000396222.2,ENST00000430553.2,ENST00000227157.4,ENST00000494573.2,ENST00000541097.1,ENST00000539814.1	chr11	18416132:18416183:18418365:18418515:18420977:18421068,	18418366	18418515	18418442	18418442	Frame_Shift_Del	C	-	p.T18fs
COAD	TCGA-A6-6780-01	LDLR	ENST00000545707.1	chr19	11227534:11227674:11230767:11230909:11233849:11234020,	11230768	11230909	11230865	11230865	Frame_Shift_Del	C	-	p.S607fs
COAD	TCGA-AA-3663-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889632	25889632	Frame_Shift_Del	T	-	p.P201fs
COAD	TCGA-CK-5916-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889632	25889632	Frame_Shift_Del	T	-	p.P201fs
COAD	TCGA-G4-6588-01	LEMD1	ENST00000367154.1,ENST00000391936.2	chr1	205385359:205385424:205388357:205388480:205389582:205389702,205350512:205350984:205388357:205388480:205389582:205389702,	205388358	205388480	205388453	205388453	Frame_Shift_Del	T	-	p.K37fs
COAD	TCGA-CM-4743-01	LENG8	ENST00000376526.4,ENST00000431846.1,ENST00000326764.5	chr19	54967145:54967424:54967503:54967644:54967814:54968100,	54967504	54967644	54967587	54967587	Frame_Shift_Del	G	-	p.R463fs
COAD	TCGA-CM-6674-01	LEPROTL1	ENST00000321250.8,ENST00000518192.1	chr8	29959455:29959489:29961815:29962002:29994787:29995213,29959455:29959489:29961815:29962002:29963261:29963544,	29961816	29962002	29961840	29961841	Frame_Shift_Ins	-	T	p.L39fs
COAD	TCGA-AZ-6598-01	LHCGR	ENST00000602369.1	chr2	48921379:48921443:48925753:48925914:48936086:48936161,	48925754	48925914	48925846	48925846	Frame_Shift_Del	T	-	p.L259fs
COAD	TCGA-AZ-6598-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925846	48925846	Frame_Shift_Del	T	-	p.L259fs
COAD	TCGA-A6-5665-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310485	33310486	Frame_Shift_Ins	-	A	p.T154fs
COAD	TCGA-A6-5665-01	LIG3	ENST00000592690.1	chr17	33307595:33307641:33310250:33310571:33313006:33313150,	33310251	33310571	33310485	33310486	Frame_Shift_Ins	-	A	p.T154fs
COAD	TCGA-D5-6930-01	LIG3	ENST00000378526.4,ENST00000586119.1,ENST00000262327.5	chr17	33325237:33325315:33325622:33325746:33326325:33326468,	33325623	33325746	33325682	33325682	Frame_Shift_Del	G	-	p.E683fs
COAD	TCGA-AZ-4615-01	LIMCH1	ENST00000512946.1,ENST00000313860.7,ENST00000512820.1,ENST00000396595.3,ENST00000508466.1,ENST00000503057.1,ENST00000514096.1,ENST00000511496.1,ENST00000381753.4,ENST00000513024.1,ENST00000509277.1,ENST00000508501.1	chr4	41678398:41678479:41682022:41682115:41682971:41683076,	41682023	41682115	41682066	41682066	Frame_Shift_Del	A	-	p.E804fs
COAD	TCGA-A6-5665-01	LMAN2L	ENST00000449221.1,ENST00000377079.4	chr2	97377600:97377762:97399255:97399338:97400145:97400263,97378843:97378876:97399255:97399338:97400145:97400263,	97399256	97399338	97399303	97399304	Frame_Shift_Ins	-	C	p.L154fs
COAD	TCGA-AZ-6598-01	LMBRD2	ENST00000296603.4	chr5	36117836:36118018:36122381:36122565:36122949:36123063,	36122382	36122565	36122474	36122474	Frame_Shift_Del	T	-	p.N343fs
COAD	TCGA-A6-6780-01	LMNB2	ENST00000325327.3,ENST00000582871.1,ENST00000532465.1	chr19	2431545:2431656:2431780:2431900:2432413:2432515,	2431781	2431900	2431861	2431862	Frame_Shift_Ins	-	G	p.S524fs
COAD	TCGA-G4-6588-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821393	97821393	Frame_Shift_Del	T	-	p.V539fs
COAD	TCGA-CM-4743-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763923	74763924	Frame_Shift_Ins	-	C	p.G275fs
COAD	TCGA-CM-6166-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763923	74763924	Frame_Shift_Ins	-	C	p.G275fs
COAD	TCGA-D5-6930-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763924	74763924	Frame_Shift_Del	C	-	p.G275fs
COAD	TCGA-G4-6586-01	LPIN2	ENST00000584294.1	chr18	2954513:2954597:2960646:2960847:3013084:3013313,	2960647	2960847	2960695	2960695	Frame_Shift_Del	A	-	p.H49fs
COAD	TCGA-CM-4743-01	LPIN3	ENST00000373257.3	chr20	39978413:39978534:39978694:39979037:39980460:39980560,	39978695	39979037	39979029	39979029	Frame_Shift_Del	G	-	p.R365fs
COAD	TCGA-AD-6889-01	LPIN3	ENST00000373257.3	chr20	39980699:39980860:39981245:39981339:39981437:39981507,	39981246	39981339	39981287	39981287	Frame_Shift_Del	A	-	p.T468fs
COAD	TCGA-G4-6628-01	LPO	ENST00000262290.4,ENST00000580890.1,ENST00000543544.1,ENST00000389576.4,ENST00000421678.2,ENST00000582328.1	chr17	56332171:56332332:56342082:56342335:56343513:56343687,	56342083	56342335	56342142	56342143	Frame_Shift_Ins	-	C	p.I442fs
COAD	TCGA-A6-6653-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42357189	42357190	Frame_Shift_Ins	-	T	p.T454fs
COAD	TCGA-AD-6889-01	LRIG1	ENST00000383703.3,ENST00000273261.3,ENST00000496559.2,ENST00000495037.1	chr3	66436404:66436725:66444463:66444627:66448535:66448607,	66444464	66444627	66444486	66444487	Frame_Shift_Del	CA	-	p.482_483del
COAD	TCGA-A6-6781-01	LRP1	ENST00000243077.3,ENST00000556356.1	chr12	57603474:57603651:57603811:57603952:57604089:57604263,	57603812	57603952	57603939	57603940	Frame_Shift_Ins	-	C	p.T4189fs
COAD	TCGA-AZ-6598-01	LRP1B	ENST00000389484.3,ENST00000437977.1,ENST00000442974.1	chr2	141027810:141027915:141031992:141032167:141055376:141055538,	141031993	141032167	141032034	141032034	Frame_Shift_Del	C	-	p.H4368fs
COAD	TCGA-CM-5861-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169997024	169997025	Frame_Shift_Ins	-	G	p.P4380fs
COAD	TCGA-G4-6628-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169997025	169997025	Frame_Shift_Del	G	-	p.P4380fs
COAD	TCGA-A6-6780-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127461	170127462	Frame_Shift_Ins	-	A	p.S758fs
COAD	TCGA-CM-6171-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127594	170127594	Frame_Shift_Del	A	-	p.S714fs
COAD	TCGA-AZ-6598-01	LRP2BP	ENST00000510776.1,ENST00000362004.3,ENST00000328559.7,ENST00000505916.1	chr4	186295288:186295394:186295472:186295615:186296766:186296880,	186295473	186295615	186295505	186295505	Frame_Shift_Del	T	-	p.G148fs
COAD	TCGA-G4-6586-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68183795:68183995:68190956:68191165:68192569:68192760,	68190957	68191165	68191118	68191119	Frame_Shift_Ins	-	G	p.R1063fs
COAD	TCGA-DM-A28F-01	LRRC1	ENST00000370888.1,ENST00000370882.1,ENST00000487251.1	chr6	53659887:53660213:53706907:53707025:53743790:53743869,	53706908	53707025	53706939	53706939	Frame_Shift_Del	T	-	p.L64fs
COAD	TCGA-CM-6677-01	LRRC23	ENST00000451681.1,ENST00000428946.1,ENST00000486401.1	chr12	6992867:6993083:7014748:7014923:7015572:7015619,7014037:7014067:7014748:7014923:7015572:7015619,	7014749	7014923	7014849	7014852	Frame_Shift_Del	GAGA	-	p.17_18del
COAD	TCGA-A6-6141-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746067:46746232:46746796:46747057:46751033:46752171,	46746797	46747057	46746971	46746972	Frame_Shift_Del	TG	-	p.528_528del
COAD	TCGA-A6-5660-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46751228	46751229	Frame_Shift_Ins	-	C	p.E434fs
COAD	TCGA-A6-5667-01	LRRC43	ENST00000425921.1,ENST00000339777.4	chr12	122684735:122684877:122685078:122685207:122685292:122685325,	122685079	122685207	122685184	122685184	Frame_Shift_Del	A	-	p.G532fs
COAD	TCGA-AZ-4615-01	LRRC49	ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558137.1,ENST00000560107.2,ENST00000561285.1,ENST00000561081.1,ENST00000260382.5,ENST00000443425.2,ENST00000560691.1	chr15	71203870:71203937:71211388:71211532:71229099:71229161,	71211389	71211532	71211452	71211452	Frame_Shift_Del	T	-	p.N210fs
COAD	TCGA-A6-5665-01	LRRCC1	ENST00000360375.3,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86025265:86025334:86035647:86035841:86037026:86037174,86027609:86027819:86035647:86035841:86037026:86037174,	86035648	86035841	86035692	86035692	Frame_Shift_Del	A	-	p.P325fs
COAD	TCGA-A6-6781-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041561	86041562	Frame_Shift_Ins	-	A	p.E525fs
COAD	TCGA-F4-6856-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86042153:86042293:86043994:86044196:86047081:86047267,	86043995	86044196	86044016	86044017	Frame_Shift_Ins	-	T	p.E596fs
COAD	TCGA-D5-6928-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86043994:86044196:86047081:86047267:86048023:86048198,	86047082	86047267	86047208	86047209	Frame_Shift_Ins	-	A	p.Q699fs
COAD	TCGA-G4-6588-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37114280:37114373:37116514:37116607,37107714:37107816:37114280:37114373:37116514:37116607,	37114281	37114373	37114286	37114286	Frame_Shift_Del	T	-	p.I487fs
COAD	TCGA-CM-4743-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450034	85450035	Frame_Shift_Ins	-	A	p.A488fs
COAD	TCGA-CM-6162-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450034	85450035	Frame_Shift_Ins	-	A	p.A488fs
COAD	TCGA-AA-3492-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450035	85450035	Frame_Shift_Del	A	-	p.A488fs
COAD	TCGA-CK-5913-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450035	85450035	Frame_Shift_Del	A	-	p.A488fs
COAD	TCGA-AZ-4615-01	LRRIQ3	ENST00000395089.1,ENST00000415760.1,ENST00000354431.4	chr1	74621416:74621550:74648221:74648545:74649119:74649178,	74648222	74648545	74648381	74648381	Frame_Shift_Del	T	-	p.G139fs
COAD	TCGA-AD-5900-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40646766:40646818:40651049:40651179:40653281:40653406,	40651050	40651179	40651060	40651060	Frame_Shift_Del	A	-	p.R433fs
COAD	TCGA-AD-5900-01	LRRK2	ENST00000416796.1,ENST00000298910.7,ENST00000343742.2	chr12	40653281:40653406:40657590:40657703:40668384:40668529,	40657591	40657703	40657647	40657647	Frame_Shift_Del	A	-	p.V533fs
COAD	TCGA-AZ-4615-01	LRRK2	ENST00000416796.1,ENST00000298910.7,ENST00000343742.2	chr12	40653281:40653406:40657590:40657703:40668384:40668529,	40657591	40657703	40657647	40657647	Frame_Shift_Del	A	-	p.V533fs
COAD	TCGA-AA-3492-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713869	40713870	Frame_Shift_Ins	-	A	p.S1636fs
COAD	TCGA-CK-5913-01	LSM14A	ENST00000540746.2,ENST00000588582.2,ENST00000544216.3,ENST00000586157.1,ENST00000433627.5	chr19	34706500:34706566:34710295:34710478:34710610:34710782,	34710296	34710478	34710330	34710331	Frame_Shift_Ins	-	G	p.R272fs
COAD	TCGA-AM-5820-01	LSP1	ENST00000406638.2,ENST00000421485.1,ENST00000451814.1,ENST00000432093.1,ENST00000405957.2,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1892581:1892642:1902661:1902826:1904648:1904658,1901316:1901454:1902661:1902826:1904648:1904658,	1902662	1902826	1902785	1902786	Frame_Shift_Ins	-	C	p.E43fs
COAD	TCGA-A6-6780-01	LSP1	ENST00000406638.2,ENST00000421485.1,ENST00000451814.1,ENST00000432093.1,ENST00000405957.2,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1892581:1892642:1902661:1902826:1904648:1904658,1901316:1901454:1902661:1902826:1904648:1904658,	1902662	1902826	1902786	1902786	Frame_Shift_Del	C	-	p.E43fs
COAD	TCGA-AY-6197-01	LSP1	ENST00000406638.2,ENST00000421485.1,ENST00000451814.1,ENST00000432093.1,ENST00000405957.2,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1892581:1892642:1902661:1902826:1904648:1904658,1901316:1901454:1902661:1902826:1904648:1904658,	1902662	1902826	1902786	1902786	Frame_Shift_Del	C	-	p.E43fs
COAD	TCGA-CM-5861-01	LSR	ENST00000347609.4,ENST00000361790.3,ENST00000597933.1	chr19	35749847:35749967:35752827:35752884:35757261:35757330,35749847:35749967:35752827:35752884:35753448:35753491,	35752828	35752884	35752862	35752862	Frame_Shift_Del	T	-	p.G251fs
COAD	TCGA-CM-6162-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74974675:74974798:74975306:74975432:74975532:74975655,	74975307	74975432	74975393	74975394	Frame_Shift_Ins	-	G	p.H1189fs
COAD	TCGA-G4-6628-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000556206.1,ENST00000553939.1	chr14	74975532:74975655:74975940:74976066:74976436:74976510,	74975941	74976066	74975976	74975976	Frame_Shift_Del	C	-	p.G1123fs
COAD	TCGA-D5-6540-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1,ENST00000557425.1	chr14	75002634:75002703:75016565:75016668:75017766:75018053,	75016566	75016668	75016599	75016599	Frame_Shift_Del	C	-	p.V586fs
COAD	TCGA-AZ-6598-01	LTBP3	ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000526825.1,ENST00000530426.1	chr11	65320634:65320727:65320895:65321001:65321171:65321198,	65320896	65321001	65320986	65320986	Frame_Shift_Del	G	-	p.L294fs
COAD	TCGA-G4-6586-01	LTBR	ENST00000541102.1,ENST00000535739.1,ENST00000544454.1,ENST00000228918.4,ENST00000536876.1,ENST00000539925.1	chr12	6494392:6494545:6495231:6495328:6495512:6495537,	6495232	6495328	6495298	6495298	Frame_Shift_Del	C	-	p.S180fs
COAD	TCGA-G4-6320-01	LTK	ENST00000561619.1,ENST00000563518.1,ENST00000453182.2,ENST00000263800.6,ENST00000355166.5	chr15	41796705:41796838:41796970:41797072:41797169:41797262,	41796971	41797072	41797050	41797050	Frame_Shift_Del	C	-	p.D551fs
COAD	TCGA-CM-6171-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827881	48827882	Frame_Shift_Ins	-	A	p.D386fs
COAD	TCGA-CM-5861-01	LYAR	ENST00000343470.4,ENST00000452476.1	chr4	4270256:4270342:4275309:4275396:4276093:4276496,	4275310	4275396	4275372	4275372	Frame_Shift_Del	T	-	p.K286fs
COAD	TCGA-AD-6889-01	LYPLA2	ENST00000495365.1,ENST00000374514.3,ENST00000374502.3,ENST00000374503.3,ENST00000421070.1,ENST00000400061.1,ENST00000374505.2	chr1	24119146:24119250:24119497:24119529:24119640:24119706,	24119498	24119529	24119502	24119502	Frame_Shift_Del	T	-	p.I28fs
COAD	TCGA-AZ-6598-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198752	20198752	Frame_Shift_Del	T	-	p.N411fs
COAD	TCGA-AZ-6598-01	MAEA	ENST00000513301.1	chr4	1305766:1305949:1309184:1309388:1316168:1316202,1305766:1306026:1309184:1309388:1316168:1316291,	1309185	1309388	1309225	1309226	Frame_Shift_Del	TG	-	p.98_98del
COAD	TCGA-AA-3663-01	MAMDC2	ENST00000377182.4	chr9	72785394:72785547:72833252:72833512:72840665:72840750,	72833253	72833512	72833354	72833354	Frame_Shift_Del	T	-	p.T584fs
COAD	TCGA-AA-3713-01	MAMSTR	ENST00000356751.4,ENST00000419611.1,ENST00000318083.6	chr19	49217116:49217302:49218062:49218165:49218518:49218703,49217622:49217817:49218062:49218165:49218518:49218703,	49218063	49218165	49218105	49218106	Frame_Shift_Ins	-	G	p.P162fs
COAD	TCGA-CM-6162-01	MAMSTR	ENST00000356751.4,ENST00000419611.1,ENST00000318083.6	chr19	49217116:49217302:49218062:49218165:49218518:49218703,49217622:49217817:49218062:49218165:49218518:49218703,	49218063	49218165	49218106	49218106	Frame_Shift_Del	G	-	p.P162fs
COAD	TCGA-A6-6781-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561667	210561667	Frame_Shift_Del	A	-	p.A1471fs
COAD	TCGA-D5-6540-01	MAP2K7	ENST00000397979.3,ENST00000468058.1,ENST00000545011.1,ENST00000397983.3	chr19	7975983:7976044:7976134:7976215:7976320:7976463,	7976135	7976215	7976149	7976149	Frame_Shift_Del	C	-	p.D290fs
COAD	TCGA-D5-6928-01	MAP3K10	ENST00000597986.1,ENST00000253055.3	chr19	40718982:40719095:40719423:40720128:40720876:40721435,	40719424	40720128	40719462	40719462	Frame_Shift_Del	C	-	p.V625fs
COAD	TCGA-CM-4746-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469691	161469691	Frame_Shift_Del	A	-	p.G129fs
COAD	TCGA-AA-3663-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469828	161469829	Frame_Shift_Ins	-	A	p.P175fs
COAD	TCGA-CM-6171-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469828	161469829	Frame_Shift_Ins	-	A	p.P175fs
COAD	TCGA-AD-6889-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469829	161469829	Frame_Shift_Del	A	-	p.P175fs
COAD	TCGA-AZ-6601-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469829	161469829	Frame_Shift_Del	A	-	p.P175fs
COAD	TCGA-D5-6928-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000350198.4,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102504239:102504399:102505257:102505397:102507627:102507783,	102505258	102505397	102505288	102505288	Frame_Shift_Del	G	-	p.W1102fs
COAD	TCGA-AD-6964-01	MAPKAPK3	ENST00000357955.2	chr3	50654561:50654672:50654944:50655215:50677796:50677936,50654600:50654657:50654944:50655215:50677796:50677936,	50654945	50655215	50655080	50655080	Frame_Shift_Del	G	-	p.P28fs
COAD	TCGA-CM-6162-01	MAPKAPK3	ENST00000357955.2	chr3	50654561:50654672:50654944:50655215:50677796:50677936,50654600:50654657:50654944:50655215:50677796:50677936,	50654945	50655215	50655080	50655080	Frame_Shift_Del	G	-	p.P28fs
COAD	TCGA-D5-6536-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000559274.1,ENST00000429436.2	chr14	103934422:103934523:103941329:103941547:103946723:103946827,	103941330	103941547	103941334	103941335	Frame_Shift_Ins	-	C	p.G423fs
COAD	TCGA-F4-6856-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715821	68715821	Frame_Shift_Del	G	-	p.L203fs
COAD	TCGA-CM-4743-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68716145	68716146	Frame_Shift_Del	TG	-	p.311_311del
COAD	TCGA-G4-6588-01	MAST2	ENST00000372009.2,ENST00000372008.2,ENST00000361297.2	chr1	46493402:46493535:46494439:46494605:46495137:46495239,	46494440	46494605	46494558	46494559	Frame_Shift_Ins	-	T	p.P724fs
COAD	TCGA-A6-6780-01	MAST2	ENST00000372009.2,ENST00000372008.2,ENST00000361297.2	chr1	46493402:46493535:46494439:46494605:46495137:46495239,	46494440	46494605	46494559	46494559	Frame_Shift_Del	T	-	p.P724fs
COAD	TCGA-CK-5913-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459056	27459056	Frame_Shift_Del	A	-	p.A389fs
COAD	TCGA-A6-6780-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459253	27459254	Frame_Shift_Ins	-	A	p.C455fs
COAD	TCGA-AY-6197-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459575	27459575	Frame_Shift_Del	A	-	p.S562fs
COAD	TCGA-AA-3492-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643806	138643806	Frame_Shift_Del	T	-	p.S234fs
COAD	TCGA-AA-3492-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643806	138643806	Frame_Shift_Del	T	-	p.S234fs
COAD	TCGA-G4-6309-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643806	138643806	Frame_Shift_Del	T	-	p.S234fs
COAD	TCGA-G4-6309-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643806	138643806	Frame_Shift_Del	T	-	p.S234fs
COAD	TCGA-CM-4746-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247479	149247480	Frame_Shift_Ins	-	A	p.S1193fs
COAD	TCGA-D5-6930-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247480	149247480	Frame_Shift_Del	A	-	p.S1193fs
COAD	TCGA-D5-6930-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919377	57919377	Frame_Shift_Del	C	-	p.A209fs
COAD	TCGA-F4-6570-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919697	57919697	Frame_Shift_Del	C	-	p.A315fs
COAD	TCGA-AA-3492-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57920075	57920075	Frame_Shift_Del	C	-	p.P441fs
COAD	TCGA-AZ-6598-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920934	57920934	Frame_Shift_Del	C	-	p.A669fs
COAD	TCGA-A6-6653-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921002	57921002	Frame_Shift_Del	C	-	p.T691fs
COAD	TCGA-AA-3663-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921002	57921002	Frame_Shift_Del	C	-	p.T691fs
COAD	TCGA-AD-6964-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921002	57921002	Frame_Shift_Del	C	-	p.T691fs
COAD	TCGA-G4-6320-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921002	57921002	Frame_Shift_Del	C	-	p.T691fs
COAD	TCGA-D5-6928-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921400	57921401	Frame_Shift_Ins	-	C	p.R731fs
COAD	TCGA-CK-5913-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
COAD	TCGA-CM-6171-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
COAD	TCGA-CM-5341-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921731	57921732	Frame_Shift_Ins	-	G	p.P779fs
COAD	TCGA-AA-3492-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921732	Frame_Shift_Del	G	-	p.P779fs
COAD	TCGA-AA-3663-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921732	Frame_Shift_Del	G	-	p.P779fs
COAD	TCGA-AM-5820-01	MBOAT2	ENST00000486484.1	chr2	9083315:9083393:9098625:9098771:9143668:9143787,	9098626	9098771	9098635	9098636	Frame_Shift_Ins	-	A	p.C71fs
COAD	TCGA-AZ-6598-01	MBOAT2	ENST00000486484.1	chr2	9083315:9083393:9098625:9098771:9143668:9143787,	9098626	9098771	9098636	9098636	Frame_Shift_Del	A	-	p.C71fs
COAD	TCGA-AZ-6598-01	MBP	ENST00000581878.1,ENST00000579129.1,ENST00000397860.3,ENST00000580402.1,ENST00000397863.1,ENST00000355994.2,ENST00000490754.1	chr18	74729074:74729224:74778253:74778341:74817166:74817217,	74778254	74778341	74778307	74778307	Frame_Shift_Del	T	-	p.K29fs
COAD	TCGA-CM-6674-01	MBP	ENST00000581878.1,ENST00000579129.1,ENST00000397860.3,ENST00000580402.1,ENST00000397863.1,ENST00000355994.2,ENST00000490754.1	chr18	74729074:74729224:74778253:74778341:74817166:74817217,	74778254	74778341	74778307	74778307	Frame_Shift_Del	T	-	p.K29fs
COAD	TCGA-D5-6930-01	MCCC2	ENST00000512218.2,ENST00000509358.2,ENST00000505787.3,ENST00000323375.8,ENST00000340941.6	chr5	70895485:70895587:70898332:70898460:70900182:70900295,	70898333	70898460	70898399	70898400	Frame_Shift_Ins	-	A	p.V150fs
COAD	TCGA-D5-6927-01	MCM3AP	ENST00000397708.1,ENST00000291688.1	chr21	47699906:47700051:47700410:47700489:47703528:47703752,	47700411	47700489	47700459	47700460	Frame_Shift_Ins	-	C	p.K492fs
COAD	TCGA-G4-6588-01	MCM7	ENST00000485286.1,ENST00000489841.1,ENST00000491245.2,ENST00000303887.5,ENST00000354230.3	chr7	99691795:99691964:99693009:99693093:99693396:99693596,	99693010	99693093	99693045	99693045	Frame_Shift_Del	G	-	p.S373fs
COAD	TCGA-D5-6928-01	MCOLN1	ENST00000264079.6	chr19	7591646:7591812:7592405:7592514:7592749:7592780,	7592406	7592514	7592423	7592423	Frame_Shift_Del	C	-	p.D196fs
COAD	TCGA-A6-6653-01	MCOLN1	ENST00000264079.6	chr19	7591646:7591812:7592405:7592514:7592749:7592780,	7592406	7592514	7592444	7592444	Frame_Shift_Del	C	-	p.P203fs
COAD	TCGA-AA-3663-01	MCPH1	ENST00000344683.5	chr8	6299587:6299677:6301913:6303068:6312663:6312773,	6301914	6303068	6302639	6302639	Frame_Shift_Del	A	-	p.G417fs
COAD	TCGA-CK-5916-01	MCPH1	ENST00000344683.5	chr8	6357372:6357450:6478974:6479212:6500514:6500891,	6478975	6479212	6479067	6479067	Frame_Shift_Del	C	-	p.S769fs
COAD	TCGA-AA-3713-01	MCTP1	ENST00000515393.1,ENST00000514040.1,ENST00000508509.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8	chr5	94046522:94046632:94050481:94050591:94114814:94114868,	94050482	94050591	94050575	94050575	Frame_Shift_Del	C	-	p.G655fs
COAD	TCGA-AA-3492-01	MCTP1	ENST00000515393.1,ENST00000514040.1,ENST00000508509.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8	chr5	94046522:94046632:94050481:94050591:94114814:94114868,	94050482	94050591	94050578	94050578	Frame_Shift_Del	T	-	p.K654fs
COAD	TCGA-AD-6889-01	MCTP1	ENST00000515393.1,ENST00000514040.1,ENST00000508509.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8	chr5	94046522:94046632:94050481:94050591:94114814:94114868,	94050482	94050591	94050578	94050578	Frame_Shift_Del	T	-	p.K654fs
COAD	TCGA-G4-6588-01	MDM1	ENST00000303145.7,ENST00000540418.1,ENST00000411698.2	chr12	68690702:68690762:68696399:68696652:68707222:68707332,	68696400	68696652	68696520	68696520	Frame_Shift_Del	T	-	p.I618fs
COAD	TCGA-F4-6856-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072518	60072519	Frame_Shift_Ins	-	T	p.H726fs
COAD	TCGA-A6-6653-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60087991	60087992	Frame_Shift_Ins	-	A	p.L629fs
COAD	TCGA-D5-6540-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37579579:37579698:37579949:37580074:37580879:37580991,	37579950	37580074	37580062	37580065	Frame_Shift_Del	GAAG	-	p.288_289del
COAD	TCGA-A6-6780-01	MED23	ENST00000354577.4,ENST00000368068.3,ENST00000545957.1,ENST00000403834.3,ENST00000368060.3,ENST00000368058.1	chr6	131917086:131917303:131917657:131917828:131919426:131919607,	131917658	131917828	131917748	131917748	Frame_Shift_Del	A	-	p.R897fs
COAD	TCGA-CM-5861-01	MEF2C	ENST00000506716.1,ENST00000513252.1,ENST00000424173.2	chr5	88047682:88047860:88056804:88056942:88100414:88100618,	88056805	88056942	88056849	88056849	Frame_Shift_Del	T	-	p.I118fs
COAD	TCGA-AD-6889-01	MEF2C	ENST00000506716.1,ENST00000513252.1,ENST00000424173.2	chr5	88047682:88047860:88056804:88056942:88100414:88100618,	88056805	88056942	88056859	88056859	Frame_Shift_Del	T	-	p.Y115fs
COAD	TCGA-AA-3713-01	MEF2D	ENST00000360595.3,ENST00000368240.2,ENST00000348159.4	chr1	156449081:156449138:156449377:156449588:156452228:156452432,156449081:156449138:156449377:156449588:156450625:156450763,	156449378	156449588	156449440	156449441	Frame_Shift_Ins	-	G	p.Q182fs
COAD	TCGA-AD-6895-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410403	3410404	Frame_Shift_Ins	-	C	p.A1440fs
COAD	TCGA-AZ-6598-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410404	3410404	Frame_Shift_Del	C	-	p.A1440fs
COAD	TCGA-F4-6570-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410404	3410404	Frame_Shift_Del	C	-	p.A1440fs
COAD	TCGA-F4-6856-01	MEGF6	ENST00000294599.4	chr1	3413796:3413925:3414934:3415063:3416151:3416280,	3414935	3415063	3415052	3415052	Frame_Shift_Del	G	-	p.R1079fs
COAD	TCGA-AZ-6598-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838297	42838298	Frame_Shift_Ins	-	G	p.W164fs
COAD	TCGA-CM-5861-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838298	42838298	Frame_Shift_Del	G	-	p.W164fs
COAD	TCGA-A6-6780-01	MEIS1	ENST00000490726.1,ENST00000272369.9,ENST00000398506.2,ENST00000407092.2,ENST00000488550.1,ENST00000444274.2,ENST00000560281.2	chr2	66666452:66666803:66666974:66667116:66667693:66667744,66664938:66665095:66666974:66667116:66667693:66667744,	66666975	66667116	66667033	66667034	Frame_Shift_Ins	-	C	p.T100fs
COAD	TCGA-AZ-6598-01	MEIS1	ENST00000490726.1,ENST00000272369.9,ENST00000398506.2,ENST00000407092.2,ENST00000488550.1,ENST00000444274.2,ENST00000560281.2	chr2	66666452:66666803:66666974:66667116:66667693:66667744,66664938:66665095:66666974:66667116:66667693:66667744,	66666975	66667116	66667034	66667034	Frame_Shift_Del	C	-	p.T100fs
COAD	TCGA-A6-6781-01	MEIS1	ENST00000542964.1	chr2	66691240:66691352:66739280:66739426:66775074:66775151,66723157:66723332:66739280:66739426:66775074:66775151,	66739281	66739426	66739308	66739308	Frame_Shift_Del	C	-	p.S257fs
COAD	TCGA-G4-6302-01	MEIS2	ENST00000560617.1	chr15	37387764:37387815:37388489:37388631:37390167:37390400,37387764:37387815:37388489:37388631:37389471:37389568,	37388490	37388631	37388626	37388626	Frame_Shift_Del	G	-	p.P84fs
COAD	TCGA-F4-6570-01	MELK	ENST00000487398.1	chr9	36572907:36573004:36581640:36581736:36583623:36583709,36572907:36573004:36581640:36581736:36589532:36589649,36572920:36573195:36581640:36581736:36589532:36589649,	36581641	36581736	36581730	36581730	Frame_Shift_Del	G	-	p.I17fs
COAD	TCGA-F4-6855-01	MELK	ENST00000541717.1	chr9	36657237:36657360:36665346:36665578:36669306:36669403,36651742:36651874:36665346:36665578:36669306:36669403,	36665347	36665578	36665502	36665503	Frame_Shift_Del	AA	-	p.412_412del
COAD	TCGA-CK-5916-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028487	100028487	Frame_Shift_Del	C	-	p.H282fs
COAD	TCGA-AD-5900-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028513	100028513	Frame_Shift_Del	C	-	p.T291fs
COAD	TCGA-A6-6781-01	MFGE8	ENST00000560937.1,ENST00000566497.1,ENST00000558018.1,ENST00000542878.1,ENST00000539437.1,ENST00000268150.8	chr15	89442691:89442763:89442886:89443042:89444781:89444869,	89442887	89443042	89442994	89442994	Frame_Shift_Del	C	-	p.A307fs
COAD	TCGA-CM-4746-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12049221:12049400:12052611:12052747:12056212:12056375,	12052612	12052747	12052736	12052736	Frame_Shift_Del	T	-	p.A100fs
COAD	TCGA-CK-5916-01	MFSD11	ENST00000588768.1,ENST00000588670.1	chr17	74738272:74738355:74740403:74740548:74750128:74750169,	74740404	74740548	74740452	74740453	Frame_Shift_Ins	-	G	p.V130fs
COAD	TCGA-A6-6780-01	MFSD8	ENST00000513559.1,ENST00000296468.3,ENST00000515130.1	chr4	128854139:128854248:128861007:128861152:128864906:128865147,128859937:128859993:128861007:128861152:128864906:128865147,128859937:128859993:128861007:128861152:128863199:128863304,	128861008	128861152	128861118	128861118	Frame_Shift_Del	T	-	p.G197fs
COAD	TCGA-AA-3510-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021441	42021442	Frame_Shift_Ins	-	A	p.R1246fs
COAD	TCGA-AA-3663-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021441	42021442	Frame_Shift_Ins	-	A	p.R1246fs
COAD	TCGA-A6-5665-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42053936:42054048:42054326:42054560:42057083:42057260,	42054327	42054560	42054540	42054541	Frame_Shift_Ins	-	A	p.R2366fs
COAD	TCGA-AY-6197-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74899384:74899458:74900333:74900504:74901250:74901415,	74900334	74900504	74900437	74900438	Frame_Shift_Ins	-	C	p.C208fs
COAD	TCGA-AZ-6601-01	MGRN1	ENST00000591895.1,ENST00000399577.5,ENST00000536343.1,ENST00000415496.1,ENST00000586183.1,ENST00000262370.7,ENST00000590790.1,ENST00000587747.1,ENST00000593224.1,ENST00000588994.1	chr16	4700400:4700484:4701963:4702052:4702678:4702825,	4701964	4702052	4701982	4701983	Frame_Shift_Ins	-	C	p.A76fs
COAD	TCGA-A6-6780-01	MIB2	ENST00000506488.1,ENST00000378710.3,ENST00000378712.1,ENST00000505820.2,ENST00000357210.4,ENST00000378708.1,ENST00000464570.1,ENST00000360522.4,ENST00000520777.1,ENST00000487053.1,ENST00000489635.1,ENST00000479659.1,ENST00000504599.1,ENST00000511502.1,ENST00000473511.1,ENST00000514234.1,ENST00000355826.5,ENST00000518681.1	chr1	1563652:1563779:1563868:1564102:1564512:1564543,	1563869	1564102	1564067	1564067	Frame_Shift_Del	G	-	p.A657fs
COAD	TCGA-AD-5900-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300932	18300932	Frame_Shift_Del	G	-	p.R1499fs
COAD	TCGA-AZ-4615-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300932	18300932	Frame_Shift_Del	G	-	p.R1499fs
COAD	TCGA-CM-5861-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300932	18300932	Frame_Shift_Del	G	-	p.R1499fs
COAD	TCGA-G4-6628-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300932	18300932	Frame_Shift_Del	G	-	p.R1499fs
COAD	TCGA-A6-5665-01	MICALL2	ENST00000405088.4,ENST00000413446.1,ENST00000297508.7	chr7	1480226:1480320:1481827:1482120:1484287:1484510,	1481828	1482120	1481941	1481941	Frame_Shift_Del	G	-	p.P533fs
COAD	TCGA-F4-6570-01	MINK1	ENST00000355280.6,ENST00000453408.3	chr17	4795452:4795529:4795696:4795807:4795950:4796063,	4795697	4795807	4795720	4795720	Frame_Shift_Del	A	-	p.Q684fs
COAD	TCGA-AA-3492-01	MIOS	ENST00000405785.1,ENST00000340080.4,ENST00000493227.1	chr7	7635887:7636092:7645572:7645702:7646626:7646854,	7645573	7645702	7645613	7645614	Frame_Shift_Ins	-	A	p.D814fs
COAD	TCGA-AY-6197-01	MIS18BP1	ENST00000310806.4,ENST00000554093.1,ENST00000469020.1	chr14	45679665:45679731:45686221:45686382:45687484:45687635,	45686222	45686382	45686249	45686253	Frame_Shift_Del	TGTAC	-	p.991_993del
COAD	TCGA-AA-3663-01	MIS18BP1	ENST00000454990.1,ENST00000310806.4	chr14	45706899:45706924:45711236:45711721:45711963:45712077,	45711237	45711721	45711241	45711241	Frame_Shift_Del	T	-	p.N380fs
COAD	TCGA-AM-5820-01	MIS18BP1	ENST00000454990.1,ENST00000310806.4	chr14	45706899:45706924:45711236:45711721:45711963:45712077,	45711237	45711721	45711241	45711241	Frame_Shift_Del	T	-	p.N380fs
COAD	TCGA-CM-5861-01	MIS18BP1	ENST00000454990.1	chr14	45711963:45712077:45715945:45716580:45722237:45722380,	45715946	45716580	45716294	45716294	Frame_Shift_Del	T	-	p.M66fs
COAD	TCGA-A6-6654-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913718	129913718	Frame_Shift_Del	C	-	p.K319fs
COAD	TCGA-CM-6674-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000456676.2,ENST00000536378.1,ENST00000441265.1,ENST00000231790.2,ENST00000455445.2	chr3	37055922:37056035:37058996:37059090:37067127:37067498,37055922:37056035:37058996:37059090:37061800:37061954,	37058997	37059090	37058999	37058999	Frame_Shift_Del	C	-	p.H23fs
COAD	TCGA-CM-4746-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000456676.2,ENST00000536378.1,ENST00000441265.1,ENST00000231790.2,ENST00000455445.2	chr3	37055922:37056035:37058996:37059090:37067127:37067498,37055922:37056035:37058996:37059090:37061800:37061954,	37058997	37059090	37059062	37059062	Frame_Shift_Del	A	-	p.P44fs
COAD	TCGA-AZ-6598-01	MLH3	ENST00000555499.1,ENST00000556740.1,ENST00000355774.2,ENST00000544985.1,ENST00000238662.7,ENST00000555144.1,ENST00000380968.2	chr14	75508317:75508403:75509081:75509180:75513078:75513091,	75509082	75509180	75509082	75509083	Frame_Shift_Del	CT	-	p.1127_1127del
COAD	TCGA-G4-6588-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515675	75515675	Frame_Shift_Del	A	-	p.K229fs
COAD	TCGA-AA-3492-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515797	75515800	Frame_Shift_Del	AGAA	-	p.187_188del
COAD	TCGA-CM-5861-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515823	75515824	Frame_Shift_Del	GA	-	p.179_179del
COAD	TCGA-G4-6628-01	MLIP	ENST00000370876.2,ENST00000358276.5	chr6	54054667:54054712:54066902:54067031:54122105:54122159,	54066903	54067031	54066953	54066954	Frame_Shift_Ins	-	A	p.L345fs
COAD	TCGA-A6-6781-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962452	21962452	Frame_Shift_Del	G	-	p.E408fs
COAD	TCGA-CM-5861-01	MMP10	ENST00000539681.1	chr11	102649943:102650092:102650234:102650476:102651217:102651359,	102650235	102650476	102650395	102650395	Frame_Shift_Del	T	-	p.I63fs
COAD	TCGA-CK-5916-01	MMP13	ENST00000260302.3,ENST00000340273.4	chr11	102816374:102816478:102818619:102818779:102819753:102819887,	102818620	102818779	102818722	102818723	Frame_Shift_Ins	-	T	p.I370fs
COAD	TCGA-AZ-4615-01	MMP2	ENST00000437642.2,ENST00000570308.1,ENST00000219070.4,ENST00000543485.1	chr16	55522574:55522628:55523562:55523736:55525712:55525868,	55523563	55523736	55523596	55523596	Frame_Shift_Del	C	-	p.A347fs
COAD	TCGA-AA-3492-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.I85fs
COAD	TCGA-CM-4746-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.I85fs
COAD	TCGA-G4-6628-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954674	62954674	Frame_Shift_Del	T	-	p.P1271fs
COAD	TCGA-G4-6628-01	MOSPD2	ENST00000482354.1,ENST00000380492.3,ENST00000495110.1	chrX	14932624:14932721:14933789:14933886:14934318:14934448,	14933790	14933886	14933849	14933849	Frame_Shift_Del	G	-	p.P383fs
COAD	TCGA-D5-6927-01	MPHOSPH10	ENST00000244230.2	chr2	71361755:71361927:71365619:71365761:71366924:71366992,	71365620	71365761	71365627	71365627	Frame_Shift_Del	A	-	p.E369fs
COAD	TCGA-AY-6197-01	MPHOSPH10	ENST00000244230.2	chr2	71361755:71361927:71365619:71365761:71366924:71366992,	71365620	71365761	71365659	71365660	Frame_Shift_Ins	-	A	p.E380fs
COAD	TCGA-AD-5900-01	MPI	ENST00000323744.6,ENST00000352410.4,ENST00000535694.1,ENST00000563786.1	chr15	75188492:75188666:75189351:75189560:75189852:75190176,	75189352	75189560	75189523	75189524	Frame_Shift_Ins	-	C	p.D339fs
COAD	TCGA-A6-6780-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046886	17046886	Frame_Shift_Del	C	-	p.A351fs
COAD	TCGA-G4-6586-01	MRC2	ENST00000303375.5,ENST00000583597.1,ENST00000446119.2	chr17	60759595:60759738:60765649:60765764:60765861:60766025,	60765650	60765764	60765652	60765652	Frame_Shift_Del	T	-	p.C983fs
COAD	TCGA-AA-3492-01	MRPL15	ENST00000260102.4,ENST00000522521.1	chr8	55049827:55049993:55055222:55055346:55059941:55060104,	55055223	55055346	55055296	55055296	Frame_Shift_Del	A	-	p.E168fs
COAD	TCGA-AD-5900-01	MRPL3	ENST00000511168.1,ENST00000264995.3,ENST00000507669.1,ENST00000425847.2	chr3	131190014:131190123:131206523:131206584:131208824:131208867,	131206524	131206584	131206525	131206525	Frame_Shift_Del	T	-	p.T210fs
COAD	TCGA-CK-5915-01	MRPL47	ENST00000259038.2,ENST00000476781.1,ENST00000392659.2	chr3	179311552:179311683:179316462:179316559:179319517:179319572,	179316463	179316559	179316461	179316471	Frame_Shift_Del	ATCCTTACCTT	-	p.24_24del
COAD	TCGA-CM-4746-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693836	47693837	Frame_Shift_Del	CA	-	p.517_517del
COAD	TCGA-AA-3663-01	MSH3	ENST00000265081.6	chr5	80149948:80150135:80160631:80160761:80168934:80169106,	80160632	80160761	80160684	80160684	Frame_Shift_Del	A	-	p.E1018fs
COAD	TCGA-CM-6171-01	MST1R	ENST00000411578.2,ENST00000468525.1,ENST00000296474.3,ENST00000344206.4	chr3	49933972:49934066:49934161:49934323:49934712:49934849,	49934162	49934323	49934243	49934243	Frame_Shift_Del	C	-	p.G755fs
COAD	TCGA-G4-6628-01	MTA3	ENST00000405592.1,ENST00000407270.3,ENST00000406911.1,ENST00000406652.1,ENST00000405094.1,ENST00000454356.1,ENST00000409019.1	chr2	42886902:42887002:42909540:42909729:42922904:42922979,	42909541	42909729	42909689	42909689	Frame_Shift_Del	A	-	p.E284fs
COAD	TCGA-AD-6889-01	MTDH	ENST00000336273.3,ENST00000519293.1,ENST00000519934.1	chr8	98725889:98725997:98731276:98731417:98735106:98735263,	98731277	98731417	98731406	98731406	Frame_Shift_Del	A	-	p.V503fs
COAD	TCGA-CM-5861-01	MTIF2	ENST00000394600.3,ENST00000263629.4,ENST00000403721.1	chr2	55479711:55479789:55481176:55481337:55481789:55481961,	55481177	55481337	55481261	55481261	Frame_Shift_Del	T	-	p.T194fs
COAD	TCGA-AA-3713-01	MTMR10	ENST00000435680.1,ENST00000567567.1,ENST00000425768.1,ENST00000566338.1	chr15	31233411:31234275:31235092:31235275:31239332:31239503,	31235093	31235275	31235169	31235169	Frame_Shift_Del	A	-	p.F552fs
COAD	TCGA-D5-6930-01	MTMR14	ENST00000414996.1,ENST00000351233.5,ENST00000353332.5,ENST00000296003.4,ENST00000420925.1	chr3	9726894:9726931:9729504:9729575:9730379:9730438,	9729505	9729575	9729525	9729525	Frame_Shift_Del	T	-	p.N395fs
COAD	TCGA-AZ-6598-01	MTOR	ENST00000376838.1,ENST00000361445.4	chr1	11187066:11187201:11187680:11187863:11188060:11188183,	11187681	11187863	11187710	11187710	Frame_Shift_Del	G	-	p.Q2063fs
COAD	TCGA-D5-6928-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000463959.1	chr1	237001713:237001899:237013643:237013823:237015820:237015937,	237013644	237013823	237013678	237013678	Frame_Shift_Del	C	-	p.T517fs
COAD	TCGA-AZ-6598-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000366576.3	chr1	237054432:237054629:237057656:237057857:237058657:237058850,	237057657	237057857	237057764	237057765	Frame_Shift_Ins	-	T	p.C1104fs
COAD	TCGA-AM-5821-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453018	195453018	Frame_Shift_Del	C	-	p.A309fs
COAD	TCGA-CK-5913-01	MUC2	ENST00000359061.5,ENST00000441003.2	chr11	1075650:1075921:1077597:1077712:1078095:1078186,	1077598	1077712	1077619	1077619	Frame_Shift_Del	C	-	p.S123fs
COAD	TCGA-A6-5665-01	MUC2	ENST00000359061.5,ENST00000441003.2	chr11	1081648:1081813:1082286:1082381:1082587:1082714,	1082287	1082381	1082351	1082355	Frame_Shift_Del	CTCGG	-	p.602_603del
COAD	TCGA-G4-6586-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195513460	195513460	Frame_Shift_Del	G	-	p.P1664fs
COAD	TCGA-A6-5665-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264716	1264717	Frame_Shift_Ins	-	C	p.L2202fs
COAD	TCGA-A6-6780-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267481	1267481	Frame_Shift_Del	C	-	p.T3124fs
COAD	TCGA-G4-6309-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268355	1268355	Frame_Shift_Del	C	-	p.I3415fs
COAD	TCGA-A6-6648-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1272114	1272115	Frame_Shift_Del	CT	-	p.4668_4668del
COAD	TCGA-AZ-6598-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1272226	1272226	Frame_Shift_Del	A	-	p.I4705fs
COAD	TCGA-A6-6781-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
COAD	TCGA-AD-5900-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
COAD	TCGA-AD-6889-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
COAD	TCGA-CM-6162-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
COAD	TCGA-CM-6674-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
COAD	TCGA-A6-5665-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000427908.2	chr5	176737426:176737541:176738379:176738485:176738761:176738858,176737668:176737698:176738379:176738485:176738761:176738871,	176738380	176738485	176738407	176738408	Frame_Shift_Ins	-	G	p.Q50fs
COAD	TCGA-AD-6889-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000427908.2	chr5	176737426:176737541:176738379:176738485:176738761:176738858,176737668:176737698:176738379:176738485:176738761:176738871,	176738380	176738485	176738407	176738408	Frame_Shift_Ins	-	G	p.Q50fs
COAD	TCGA-CM-6164-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000427908.2	chr5	176737426:176737541:176738379:176738485:176738761:176738858,176737668:176737698:176738379:176738485:176738761:176738871,	176738380	176738485	176738407	176738408	Frame_Shift_Ins	-	G	p.Q50fs
COAD	TCGA-AD-6964-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000427908.2	chr5	176737426:176737541:176738379:176738485:176738761:176738858,176737668:176737698:176738379:176738485:176738761:176738871,	176738380	176738485	176738408	176738408	Frame_Shift_Del	G	-	p.Q50fs
COAD	TCGA-AZ-6598-01	MXD4	ENST00000337190.2,ENST00000513372.1,ENST00000513380.1	chr4	2252384:2252428:2252810:2252973:2254134:2254249,	2252811	2252973	2252843	2252843	Frame_Shift_Del	C	-	p.G147fs
COAD	TCGA-F4-6570-01	MYB	ENST00000526565.1,ENST00000528774.1,ENST00000341911.5	chr6	135516885:135517055:135518098:135518461:135520045:135520188,135516885:135517140:135518098:135518461:135520045:135520188,	135518099	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
COAD	TCGA-F4-6570-01	MYB	ENST00000533384.1	chr6	135516885:135517140:135517863:135518461:135520045:135520188,	135517864	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
COAD	TCGA-CM-6674-01	MYH11	ENST00000576790.2,ENST00000452625.2	chr16	15797847:15797980:15802659:15802698:15808765:15808824,	15802660	15802698	15802686	15802687	Frame_Shift_Ins	-	G	p.P1940fs
COAD	TCGA-A6-6781-01	MYH11	ENST00000576790.2,ENST00000452625.2	chr16	15797847:15797980:15802659:15802698:15808765:15808824,	15802660	15802698	15802687	15802687	Frame_Shift_Del	G	-	p.P1940fs
COAD	TCGA-AZ-6598-01	MYH11	ENST00000576790.2,ENST00000452625.2	chr16	15797847:15797980:15802659:15802698:15808765:15808824,	15802660	15802698	15802687	15802687	Frame_Shift_Del	G	-	p.P1940fs
COAD	TCGA-D5-6930-01	MYH11	ENST00000576790.2,ENST00000452625.2	chr16	15797847:15797980:15802659:15802698:15808765:15808824,	15802660	15802698	15802687	15802687	Frame_Shift_Del	G	-	p.P1940fs
COAD	TCGA-G4-6628-01	MYH11	ENST00000576790.2,ENST00000452625.2	chr16	15797847:15797980:15802659:15802698:15808765:15808824,	15802660	15802698	15802687	15802687	Frame_Shift_Del	G	-	p.P1940fs
COAD	TCGA-CK-5916-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109644723:109644796:109661244:109661397:109672058:109672259,	109661245	109661397	109661386	109661386	Frame_Shift_Del	T	-	p.D839fs
COAD	TCGA-CM-4743-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109644723:109644796:109661244:109661397:109672058:109672259,	109661245	109661397	109661386	109661386	Frame_Shift_Del	T	-	p.D839fs
COAD	TCGA-D5-6540-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109644723:109644796:109661244:109661397:109672058:109672259,	109661245	109661397	109661386	109661386	Frame_Shift_Del	T	-	p.D839fs
COAD	TCGA-F4-6856-01	MYO5C	ENST00000261839.7	chr15	52517635:52517729:52521329:52521510:52524818:52524882,	52521330	52521510	52521389	52521389	Frame_Shift_Del	C	-	p.E1050fs
COAD	TCGA-AA-3663-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.I539fs
COAD	TCGA-AZ-4615-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000595618.1	chr19	17308600:17308667:17308992:17309117:17311101:17311235,	17308993	17309117	17309029	17309029	Frame_Shift_Del	A	-	p.A1383fs
COAD	TCGA-G4-6628-01	MYOF	ENST00000359263.4,ENST00000371489.1,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95168543:95168672:95169329:95169496:95185827:95185915,	95169330	95169496	95169488	95169488	Frame_Shift_Del	C	-	p.E148fs
COAD	TCGA-AZ-4615-01	MYOM1	ENST00000356443.4,ENST00000400569.3	chr18	3126698:3126895:3129229:3129517:3131372:3131494,	3129230	3129517	3129427	3129427	Frame_Shift_Del	G	-	p.P866fs
COAD	TCGA-G4-6309-01	MZF1	ENST00000599369.1,ENST00000594234.1,ENST00000215057.2,ENST00000594108.1	chr19	59080882:59080953:59081710:59081894:59082360:59082796,	59081711	59081894	59081727	59081728	Frame_Shift_Del	CT	-	p.188_189del
COAD	TCGA-G4-6588-01	N4BP2	ENST00000513269.1,ENST00000261435.6,ENST00000511480.1	chr4	40125779:40125825:40127753:40127950:40133420:40133539,	40127754	40127950	40127795	40127796	Frame_Shift_Ins	-	A	p.Q1458fs
COAD	TCGA-G4-6628-01	NAALADL1	ENST00000340252.4,ENST00000355369.2,ENST00000529274.1,ENST00000528977.1,ENST00000358658.3,ENST00000356632.3,ENST00000339885.2	chr11	64821926:64822210:64824842:64824965:64825346:64825468,	64824843	64824965	64824848	64824848	Frame_Shift_Del	C	-	p.A200fs
COAD	TCGA-AD-6895-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191524441	191524441	Frame_Shift_Del	C	-	p.S180fs
COAD	TCGA-AU-6004-01	NAPB	ENST00000472855.1	chr20	23377708:23377825:23383629:23383709:23401941:23402051,23375558:23375636:23383629:23383709:23401941:23402051,	23383630	23383709	23383638	23383638	Frame_Shift_Del	T	-	p.N57fs
COAD	TCGA-G4-6588-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073055	46073055	Frame_Shift_Del	A	-	p.A93fs
COAD	TCGA-AM-5820-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618272	201618272	Frame_Shift_Del	C	-	p.T159fs
COAD	TCGA-AA-3492-01	NAV2	ENST00000360655.4,ENST00000396085.1,ENST00000349880.4	chr11	19901414:19901673:19913979:19914140:19954721:19955265,	19913980	19914140	19914113	19914113	Frame_Shift_Del	C	-	p.P301fs
COAD	TCGA-G4-6628-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204055014:204055112:204058517:204058634:204062024:204062114,	204058518	204058634	204058623	204058623	Frame_Shift_Del	T	-	p.S2313fs
COAD	TCGA-CM-6171-01	NBEAL1	ENST00000414576.2,ENST00000434469.1,ENST00000449802.1	chr2	204073359:204073476:204073883:204074045:204075680:204075829,	204073884	204074045	204074029	204074029	Frame_Shift_Del	A	-	p.E2561fs
COAD	TCGA-CM-6162-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90955586:90955594:90958367:90958523:90960051:90960120,	90958368	90958523	90958479	90958480	Frame_Shift_Ins	-	T	p.K653fs
COAD	TCGA-CM-6674-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41345364:41345655:41346366:41346516:41346980:41347056,	41346367	41346516	41346400	41346401	Frame_Shift_Ins	-	T	p.L520fs
COAD	TCGA-CK-5913-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41348958:41349123:41352183:41352625:41353702:41353797,	41352184	41352625	41352389	41352389	Frame_Shift_Del	C	-	p.R744fs
COAD	TCGA-AA-3492-01	NCAPG	ENST00000251496.2,ENST00000514176.1,ENST00000510063.1	chr4	17832619:17832739:17835921:17836146:17838781:17838784,	17835922	17836146	17836014	17836015	Frame_Shift_Ins	-	A	p.T659fs
COAD	TCGA-G4-6320-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025921	97025921	Frame_Shift_Del	A	-	p.T466fs
COAD	TCGA-F4-6856-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46262791:46262939:46264065:46264457:46264634:46265506,	46264066	46264457	46264348	46264348	Frame_Shift_Del	C	-	p.S465fs
COAD	TCGA-A6-6653-01	NCOA7	ENST00000368357.3,ENST00000392477.2,ENST00000419660.1,ENST00000417494.1	chr6	126136436:126136550:126176165:126176386:126196034:126196114,	126176166	126176386	126176316	126176317	Frame_Shift_Ins	-	A	p.E67fs
COAD	TCGA-CM-6171-01	NCOA7	ENST00000368357.3,ENST00000392477.2,ENST00000419660.1,ENST00000417494.1	chr6	126136436:126136550:126176165:126176386:126196034:126196114,	126176166	126176386	126176317	126176317	Frame_Shift_Del	A	-	p.E67fs
COAD	TCGA-AU-6004-01	NCOA7	ENST00000368357.3,ENST00000392477.2,ENST00000229634.9	chr6	126199408:126199516:126202235:126202349:126203571:126203697,	126202236	126202349	126202240	126202240	Frame_Shift_Del	T	-	p.L155fs
COAD	TCGA-A6-5665-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1	chr12	124829142:124829497:124831109:124831396:124832370:124832457,	124831110	124831396	124831256	124831256	Frame_Shift_Del	G	-	p.L1405fs
COAD	TCGA-CM-6674-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000458234.1	chr12	124839977:124840117:124841187:124841352:124846671:124846840,	124841188	124841352	124841251	124841251	Frame_Shift_Del	G	-	p.R1050fs
COAD	TCGA-CM-6674-01	NCOR2	ENST00000405201.1	chr12	124839977:124840117:124841187:124841328:124846671:124846840,	124841188	124841328	124841251	124841251	Frame_Shift_Del	G	-	p.R1050fs
COAD	TCGA-G4-6588-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000458234.1	chr12	124839977:124840117:124841187:124841352:124846671:124846840,	124841188	124841352	124841289	124841289	Frame_Shift_Del	G	-	p.P1047fs
COAD	TCGA-G4-6588-01	NCOR2	ENST00000405201.1	chr12	124839977:124840117:124841187:124841328:124846671:124846840,	124841188	124841328	124841289	124841289	Frame_Shift_Del	G	-	p.P1047fs
COAD	TCGA-AD-6889-01	NCOR2	ENST00000356219.3	chr12	124846671:124846843:124848224:124848345:124856567:124857156,124846671:124846840:124848224:124848345:124856567:124857156,	124848225	124848345	124848228	124848228	Frame_Shift_Del	G	-	p.I976fs
COAD	TCGA-AU-6004-01	NCOR2	ENST00000356219.3	chr12	124846671:124846843:124848224:124848345:124856567:124857156,124846671:124846840:124848224:124848345:124856567:124857156,	124848225	124848345	124848228	124848228	Frame_Shift_Del	G	-	p.I976fs
COAD	TCGA-G4-6309-01	NCOR2	ENST00000356219.3	chr12	124846671:124846843:124848224:124848345:124856567:124857156,124846671:124846840:124848224:124848345:124856567:124857156,	124848225	124848345	124848228	124848228	Frame_Shift_Del	G	-	p.I976fs
COAD	TCGA-G4-6628-01	NCOR2	ENST00000429285.2,ENST00000542927.1,ENST00000397355.1,ENST00000420698.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1,ENST00000458234.1	chr12	124934360:124934413:124941651:124941708:124950718:124950826,	124941652	124941708	124941663	124941663	Frame_Shift_Del	G	-	p.Q251fs
COAD	TCGA-CK-5916-01	NDE1	ENST00000396354.1,ENST00000396353.2,ENST00000574109.1,ENST00000577101.1,ENST00000342673.5,ENST00000396355.1	chr16	15781283:15781368:15785000:15785180:15788021:15788113,	15785001	15785180	15785049	15785049	Frame_Shift_Del	C	-	p.T191fs
COAD	TCGA-CM-6162-01	NDE1	ENST00000396354.1,ENST00000572967.1,ENST00000576502.1,ENST00000396353.2,ENST00000574109.1,ENST00000342673.5,ENST00000396355.1	chr16	15785098:15785180:15788021:15788113:15790565:15790623,	15788022	15788113	15788046	15788046	Frame_Shift_Del	C	-	p.T243fs
COAD	TCGA-D5-6540-01	NDFIP1	ENST00000253814.4	chr5	141511372:141511460:141511776:141511907:141515294:141515382,	141511777	141511907	141511814	141511815	Frame_Shift_Ins	-	C	p.K63fs
COAD	TCGA-G4-6320-01	NDUFA10	ENST00000443626.1	chr2	240929490:240929599:240946732:240946787:240957969:240958056,	240946733	240946787	240946733	240946734	Frame_Shift_Ins	-	T	p.K268fs
COAD	TCGA-A6-5665-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H202fs
COAD	TCGA-A6-5665-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H202fs
COAD	TCGA-CK-5913-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954221	240954221	Frame_Shift_Del	G	-	p.H202fs
COAD	TCGA-CK-5913-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954221	240954221	Frame_Shift_Del	G	-	p.H202fs
COAD	TCGA-CK-5916-01	NDUFA5	ENST00000471770.1,ENST00000378795.4,ENST00000355749.2,ENST00000470123.1	chr7	123185664:123185730:123190523:123190640:123197457:123197502,	123190524	123190640	123190585	123190585	Frame_Shift_Del	T	-	p.N41fs
COAD	TCGA-A6-6781-01	NDUFAF1	ENST00000260361.4	chr15	41679691:41679791:41680645:41680720:41687056:41687242,	41680646	41680720	41680700	41680701	Frame_Shift_Ins	-	A	p.F260fs
COAD	TCGA-AZ-4615-01	NDUFB6	ENST00000350021.2	chr9	32553648:32553942:32570957:32571050:32572878:32573157,	32570958	32571050	32571015	32571016	Frame_Shift_Ins	-	A	p.F72fs
COAD	TCGA-G4-6297-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	207006664:207006793:207007409:207007555:207008741:207008856,	207007410	207007555	207007448	207007455	Frame_Shift_Del	GGTGTCAG	-	p.327_330del
COAD	TCGA-AZ-6598-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	207007409:207007555:207008741:207008856:207009615:207009750,	207008742	207008856	207008762	207008763	Frame_Shift_Del	GC	-	p.287_287del
COAD	TCGA-G4-6309-01	NEB	ENST00000603639.1,ENST00000489048.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000409198.1,ENST00000172853.10	chr2	152551035:152551143:152552091:152552196:152553150:152553249,	152552092	152552196	152552144	152552144	Frame_Shift_Del	G	-	p.P541fs
COAD	TCGA-AD-6889-01	NECAB3	ENST00000488489.1,ENST00000477778.1,ENST00000485976.1,ENST00000606525.1,ENST00000478237.1,ENST00000246190.6,ENST00000485399.1,ENST00000375238.4,ENST00000494174.1,ENST00000483813.1	chr20	32245595:32245663:32245747:32245839:32246282:32246360,	32245748	32245839	32245750	32245750	Frame_Shift_Del	G	-	p.P387fs
COAD	TCGA-A6-6653-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000509912.1,ENST00000512193.1,ENST00000439128.2	chr4	170483287:170483347:170498078:170498230:170501992:170502053,	170498079	170498230	170498088	170498088	Frame_Shift_Del	T	-	p.H338fs
COAD	TCGA-D5-6928-01	NEMF	ENST00000555411.1,ENST00000555970.1,ENST00000545773.1,ENST00000556925.1,ENST00000298310.5,ENST00000546046.1	chr14	50269170:50269291:50269386:50269445:50269954:50270012,	50269387	50269445	50269439	50269439	Frame_Shift_Del	T	-	p.K641fs
COAD	TCGA-AZ-4615-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401649	78401649	Frame_Shift_Del	A	-	p.Q464fs
COAD	TCGA-AZ-4615-01	NF1	ENST00000358273.4	chr17	29576006:29576137:29579955:29580018:29584704:29584744,29576006:29576137:29579955:29580018:29585361:29585520,	29579956	29580018	29579996	29579996	Frame_Shift_Del	A	-	p.E1384fs
COAD	TCGA-CM-4743-01	NFASC	ENST00000367171.4,ENST00000367170.4,ENST00000413225.1,ENST00000401399.1,ENST00000367172.4,ENST00000339876.6	chr1	204957791:204957934:204971723:204971876:204978684:204978816,204970297:204970414:204971723:204971876:204978684:204978816,	204971724	204971876	204971735	204971735	Frame_Shift_Del	A	-	p.T1049fs
COAD	TCGA-A6-5661-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845868	24845869	Frame_Shift_Ins	-	C	p.A809fs
COAD	TCGA-G4-6309-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
COAD	TCGA-G4-6309-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
COAD	TCGA-AZ-6598-01	NFU1	ENST00000303698.3,ENST00000462320.1,ENST00000410022.2,ENST00000394305.1	chr2	69623254:69623422:69627495:69627670:69633153:69633214,	69627496	69627670	69627551	69627551	Frame_Shift_Del	T	-	p.N81fs
COAD	TCGA-CM-6162-01	NID2	ENST00000556572.1,ENST00000541773.1,ENST00000216286.5,ENST00000555310.1	chr14	52472172:52472214:52472454:52472567:52473254:52473378,	52472455	52472567	52472467	52472468	Frame_Shift_Ins	-	G	p.Y1369fs
COAD	TCGA-A6-6781-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51225062	51225065	Frame_Shift_Del	TCTC	-	p.895_896del
COAD	TCGA-CM-4746-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021237	23021238	Frame_Shift_Ins	-	T	p.G34fs
COAD	TCGA-F4-6570-01	NIPAL4	ENST00000311946.7,ENST00000519150.1,ENST00000519946.1	chr5	156890101:156890341:156894056:156894113:156895729:156895748,	156894057	156894113	156894103	156894104	Frame_Shift_Ins	-	T	p.G170fs
COAD	TCGA-A6-5665-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984789	36984789	Frame_Shift_Del	A	-	p.L502fs
COAD	TCGA-G4-6304-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984789	36984789	Frame_Shift_Del	A	-	p.L502fs
COAD	TCGA-A6-5661-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985083	36985083	Frame_Shift_Del	A	-	p.P600fs
COAD	TCGA-G4-6628-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985083	36985083	Frame_Shift_Del	A	-	p.P600fs
COAD	TCGA-G4-6309-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986120	36986120	Frame_Shift_Del	G	-	p.L946fs
COAD	TCGA-G4-6309-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
COAD	TCGA-G4-6588-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475317	32475317	Frame_Shift_Del	T	-	p.N539fs
COAD	TCGA-CK-5916-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462268	5462268	Frame_Shift_Del	T	-	p.K583fs
COAD	TCGA-A6-5665-01	NLRP12	ENST00000345770.5,ENST00000391772.1,ENST00000391773.1	chr19	54308533:54308704:54310748:54310922:54312840:54314542,	54310749	54310922	54310804	54310804	Frame_Shift_Del	C	-	p.V730fs
COAD	TCGA-A6-5665-01	NLRP12	ENST00000354278.3,ENST00000535162.1,ENST00000351894.4,ENST00000391775.3,ENST00000324134.6	chr19	54308533:54308704:54310748:54310919:54312840:54314542,	54310749	54310919	54310804	54310804	Frame_Shift_Del	C	-	p.V730fs
COAD	TCGA-D5-6529-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55450407	55450407	Frame_Shift_Del	T	-	p.I594fs
COAD	TCGA-G4-6588-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451046	55451046	Frame_Shift_Del	C	-	p.E381fs
COAD	TCGA-A6-5665-01	NLRX1	ENST00000449394.1,ENST00000409109.1,ENST00000409265.4,ENST00000525863.1,ENST00000292199.2,ENST00000454811.1,ENST00000409991.1,ENST00000422249.1	chr11	119042069:119042182:119043064:119043134:119043609:119043698,	119043065	119043134	119043127	119043127	Frame_Shift_Del	C	-	p.G44fs
COAD	TCGA-AZ-4615-01	NMRK1	ENST00000376808.4	chr9	77684657:77684729:77684810:77684958:77692074:77692119,77683911:77684018:77684810:77684958:77692074:77692123,	77684811	77684958	77684931	77684932	Frame_Shift_Ins	-	T	p.M66fs
COAD	TCGA-AZ-4615-01	NMRK1	ENST00000494066.1	chr9	77681672:77681756:77683911:77684958:77692074:77692123,	77683912	77684958	77684931	77684932	Frame_Shift_Ins	-	T	p.M66fs
COAD	TCGA-AA-3713-01	NMT2	ENST00000378165.4	chr10	15177272:15177417:15183420:15183556:15210501:15210627,	15183421	15183556	15183499	15183500	Frame_Shift_Ins	-	T	p.K56fs
COAD	TCGA-A6-6780-01	NNMT	ENST00000535401.1,ENST00000299964.3	chr11	114167149:114167432:114168672:114168880:114182766:114182930,	114168673	114168880	114168818	114168819	Frame_Shift_Del	AG	-	p.100_100del
COAD	TCGA-AA-3510-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098495	144098496	Frame_Shift_Ins	-	G	p.R163fs
COAD	TCGA-AA-3663-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13621001	13621001	Frame_Shift_Del	A	-	p.Q239fs
COAD	TCGA-G4-6628-01	NOL9	ENST00000377705.5	chr1	6604885:6604982:6605104:6605240:6609630:6609758,	6605105	6605240	6605171	6605171	Frame_Shift_Del	T	-	p.R272fs
COAD	TCGA-CK-5912-01	NONO	ENST00000373841.1	chrX	70503543:70503571:70510478:70510641:70511628:70511671,	70510479	70510641	70510601	70510602	Frame_Shift_Ins	-	CCCC	p.P38fs
COAD	TCGA-A6-6781-01	NOS3	ENST00000297494.3,ENST00000461406.1,ENST00000475017.1	chr7	150706485:150706673:150707202:150707375:150707684:150707895,	150707203	150707375	150707211	150707211	Frame_Shift_Del	C	-	p.P840fs
COAD	TCGA-CA-6716-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699562	169699563	Frame_Shift_Ins	-	A	p.Q189fs
COAD	TCGA-AA-3663-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
COAD	TCGA-A6-5665-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276860	15276861	Frame_Shift_Ins	-	C	p.A1802fs
COAD	TCGA-CK-5913-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276860	15276861	Frame_Shift_Ins	-	C	p.A1802fs
COAD	TCGA-G4-6320-01	NOTCH4	ENST00000375023.3,ENST00000473562.1	chr6	32187905:32188061:32188181:32188418:32188532:32188655,	32188182	32188418	32188294	32188295	Frame_Shift_Ins	-	C	p.G349fs
COAD	TCGA-A6-6781-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331226	69331226	Frame_Shift_Del	T	-	p.P467fs
COAD	TCGA-D5-6930-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331226	69331226	Frame_Shift_Del	T	-	p.P467fs
COAD	TCGA-AA-3663-01	NPAT	ENST00000530859.1,ENST00000278612.8	chr11	108029519:108029746:108031606:108032741:108032846:108032892,	108031607	108032741	108032695	108032696	Frame_Shift_Ins	-	T	p.S1040fs
COAD	TCGA-CM-6674-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044069	108044069	Frame_Shift_Del	T	-	p.S548fs
COAD	TCGA-F4-6856-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044069	108044069	Frame_Shift_Del	T	-	p.S548fs
COAD	TCGA-AA-3713-01	NPC1	ENST00000412552.2,ENST00000591051.1,ENST00000269228.5	chr18	21086147:21086606:21113318:21113481:21114409:21114523,21111909:21112248:21113318:21113481:21114409:21114523,	21113319	21113481	21113452	21113452	Frame_Shift_Del	A	-	p.G1208fs
COAD	TCGA-A6-6780-01	NPC1	ENST00000540608.1,ENST00000269228.5	chr18	21137080:21137154:21140194:21140444:21141323:21141491,	21140195	21140444	21140212	21140212	Frame_Shift_Del	A	-	p.A289fs
COAD	TCGA-CK-5913-01	NPHP3	ENST00000326682.8,ENST00000337331.5,ENST00000469232.1,ENST00000343113.4	chr3	132437837:132437988:132438548:132438674:132440806:132440851,	132438549	132438674	132438662	132438662	Frame_Shift_Del	T	-	p.T136fs
COAD	TCGA-AM-5820-01	NQO2	ENST00000426637.1,ENST00000380441.1,ENST00000380454.4,ENST00000338130.2,ENST00000380455.4,ENST00000397717.2,ENST00000380430.1,ENST00000380472.3	chr6	3006701:3006793:3010258:3010423:3012777:3012795,	3010259	3010423	3010327	3010328	Frame_Shift_Ins	-	T	p.A26fs
COAD	TCGA-CM-6674-01	NR1H3	ENST00000529540.1,ENST00000412937.1,ENST00000420369.1,ENST00000405853.3,ENST00000449369.1,ENST00000436029.1,ENST00000436778.1,ENST00000467728.1,ENST00000527464.1,ENST00000395397.3,ENST00000441012.2,ENST00000481020.1,ENST00000481889.2,ENST00000405576.1,ENST00000407404.1,ENST00000444396.1	chr11	47281341:47281530:47281959:47282226:47282791:47282831,	47281960	47282226	47281980	47281980	Frame_Shift_Del	A	-	p.R84fs
COAD	TCGA-G4-6628-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282868	47282869	Frame_Shift_Ins	-	C	p.L192fs
COAD	TCGA-G4-6309-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282886	47282887	Frame_Shift_Ins	-	C	p.S198fs
COAD	TCGA-AM-5820-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282887	47282887	Frame_Shift_Del	C	-	p.S198fs
COAD	TCGA-CK-5916-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282887	47282887	Frame_Shift_Del	C	-	p.S198fs
COAD	TCGA-AA-3492-01	NR5A2	ENST00000367357.3,ENST00000367362.3,ENST00000236914.3,ENST00000544748.1	chr1	200012937:200013020:200014570:200014712:200017299:200017946,	200014571	200014712	200014574	200014574	Frame_Shift_Del	T	-	p.G108fs
COAD	TCGA-AA-3663-01	NRCAM	ENST00000379024.4,ENST00000351718.4,ENST00000417701.1,ENST00000379028.3,ENST00000425651.2,ENST00000413765.2,ENST00000379022.4	chr7	107847971:107848103:107849864:107850049:107864168:107864280,	107849865	107850049	107849908	107849908	Frame_Shift_Del	G	-	p.A326fs
COAD	TCGA-AY-6197-01	NRG1	ENST00000338921.4,ENST00000287842.3,ENST00000405005.3,ENST00000356819.4,ENST00000521670.1,ENST00000287845.5,ENST00000341377.5,ENST00000523079.1	chr8	32406244:32406344:32453345:32453523:32463079:32463201,	32453346	32453523	32453511	32453511	Frame_Shift_Del	A	-	p.Q304fs
COAD	TCGA-AZ-6598-01	NRG1	ENST00000338921.4,ENST00000287842.3,ENST00000405005.3,ENST00000356819.4,ENST00000521670.1,ENST00000287845.5,ENST00000341377.5,ENST00000523079.1	chr8	32406244:32406344:32453345:32453523:32463079:32463201,	32453346	32453523	32453511	32453511	Frame_Shift_Del	A	-	p.Q304fs
COAD	TCGA-AD-6889-01	NRM	ENST00000462857.1	chr6	30657052:30657229:30657801:30658020:30658618:30658744,30655828:30656719:30657801:30658020:30658618:30658744,	30657802	30658020	30657966	30657967	Frame_Shift_Ins	-	G	p.L63fs
COAD	TCGA-AD-6889-01	NRM	ENST00000376420.5	chr6	30657052:30657229:30657823:30658020:30658618:30658744,30655828:30656719:30657823:30658020:30658618:30658744,	30657824	30658020	30657966	30657967	Frame_Shift_Ins	-	G	p.L63fs
COAD	TCGA-AU-6004-01	NRM	ENST00000462857.1	chr6	30657052:30657229:30657801:30658020:30658618:30658744,30655828:30656719:30657801:30658020:30658618:30658744,	30657802	30658020	30657966	30657967	Frame_Shift_Ins	-	G	p.L63fs
COAD	TCGA-AU-6004-01	NRM	ENST00000376420.5	chr6	30657052:30657229:30657823:30658020:30658618:30658744,30655828:30656719:30657823:30658020:30658618:30658744,	30657824	30658020	30657966	30657967	Frame_Shift_Ins	-	G	p.L63fs
COAD	TCGA-A6-6780-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765683	50765683	Frame_Shift_Del	C	-	p.L618fs
COAD	TCGA-AA-3492-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457918	64457919	Frame_Shift_Ins	-	C	p.A270fs
COAD	TCGA-D5-6928-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457918	64457919	Frame_Shift_Ins	-	C	p.A270fs
COAD	TCGA-AD-6889-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457919	64457919	Frame_Shift_Del	C	-	p.A270fs
COAD	TCGA-AU-6004-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457919	64457919	Frame_Shift_Del	C	-	p.A270fs
COAD	TCGA-AD-6964-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6607312:6607497:6609938:6610035:6611067:6611198,	6609939	6610035	6609993	6609993	Frame_Shift_Del	A	-	p.V389fs
COAD	TCGA-CM-6171-01	NT5DC3	ENST00000447799.1	chr12	104169266:104169408:104170821:104171859:104174077:104174142,	104170822	104171859	104171648	104171649	Frame_Shift_Ins	-	G	p.T536fs
COAD	TCGA-F4-6570-01	NT5DC3	ENST00000447799.1	chr12	104169266:104169408:104170821:104171859:104174077:104174142,	104170822	104171859	104171649	104171649	Frame_Shift_Del	G	-	p.T536fs
COAD	TCGA-AD-6895-01	NTNG2	ENST00000393228.4,ENST00000360670.3,ENST00000372179.3	chr9	135037333:135037626:135041735:135042431:135073352:135073996,	135041736	135042431	135042407	135042407	Frame_Shift_Del	C	-	p.D63fs
COAD	TCGA-G4-6628-01	NUCB2	ENST00000323688.6,ENST00000529010.1,ENST00000458064.2,ENST00000533773.1,ENST00000527580.1	chr11	17332466:17332557:17332739:17332830:17333418:17333477,	17332740	17332830	17332814	17332815	Frame_Shift_Ins	-	T	p.T248fs
COAD	TCGA-AA-3713-01	NUF2	ENST00000497990.1,ENST00000271452.3,ENST00000442820.1,ENST00000490881.1,ENST00000524800.1,ENST00000367900.3	chr1	163298635:163298697:163306540:163306638:163307809:163307883,	163306541	163306638	163306545	163306545	Frame_Shift_Del	A	-	p.A114fs
COAD	TCGA-F4-6856-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2	chr5	37331786:37331897:37333564:37333735:37337919:37338020,	37333565	37333735	37333653	37333653	Frame_Shift_Del	T	-	p.N418fs
COAD	TCGA-AZ-4315-01	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135286117:135286255:135287552:135287742:135289087:135289208,	135287553	135287742	135287554	135287555	Frame_Shift_Ins	-	A	p.G838fs
COAD	TCGA-AD-6889-01	NUP210	ENST00000254508.5	chr3	13373792:13373884:13376953:13377112:13378286:13378418,	13376954	13377112	13377002	13377002	Frame_Shift_Del	C	-	p.Q1266fs
COAD	TCGA-AD-5900-01	NVL	ENST00000489194.1	chr1	224415155:224415372:224418927:224418998:224420902:224420991,224415155:224415372:224418927:224418998:224424207:224424284,	224418928	224418998	224418928	224418929	Frame_Shift_Ins	-	T	p.K842fs
COAD	TCGA-G4-6628-01	OAS2	ENST00000392583.2	chr12	113416406:113416590:113424842:113425113:113433100:113433279,	113424843	113425113	113425064	113425064	Frame_Shift_Del	A	-	p.T133fs
COAD	TCGA-F4-6856-01	OASL	ENST00000339275.5	chr12	121469254:121469420:121471263:121471546:121476576:121476750,	121471264	121471546	121471414	121471414	Frame_Shift_Del	T	-	p.T111fs
COAD	TCGA-AA-3713-01	OAT	ENST00000368845.5	chr10	126097461:126097534:126100541:126100769:126107441:126107505,	126100542	126100769	126100644	126100644	Frame_Shift_Del	T	-	p.T33fs
COAD	TCGA-AD-6895-01	OBSCN	ENST00000570156.2,ENST00000359599.6	chr1	228451816:228452092:228456230:228456506:228459625:228459922,	228456231	228456506	228456470	228456470	Frame_Shift_Del	G	-	p.A1700fs
COAD	TCGA-F4-6856-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28000020:28000618:28090104:28090198:28096527:28096621,	28090105	28090198	28090108	28090108	Frame_Shift_Del	A	-	p.F810fs
COAD	TCGA-CM-5861-01	OCEL1	ENST00000599588.1	chr19	17337061:17337125:17337501:17338008:17339064:17339118,	17337502	17338008	17337840	17337840	Frame_Shift_Del	C	-	p.A95fs
COAD	TCGA-CM-5861-01	OCEL1	ENST00000601529.1	chr19	17337647:17337678:17337802:17338008:17338648:17338752,17337647:17337678:17337802:17338008:17339064:17339118,	17337803	17338008	17337840	17337840	Frame_Shift_Del	C	-	p.A95fs
COAD	TCGA-CM-5861-01	OCEL1	ENST00000601576.1	chr19	17337647:17337678:17337783:17338008:17338648:17338752,	17337784	17338008	17337840	17337840	Frame_Shift_Del	C	-	p.A95fs
COAD	TCGA-AD-6964-01	ODF2	ENST00000444993.2,ENST00000351030.3	chr9	131221845:131221936:131222828:131222945:131223220:131223289,	131222829	131222945	131222909	131222909	Frame_Shift_Del	A	-	p.I112fs
COAD	TCGA-AD-6964-01	ODF2	ENST00000448249.3,ENST00000469582.2,ENST00000535026.1	chr9	131221845:131221936:131222791:131222945:131223220:131223289,	131222792	131222945	131222909	131222909	Frame_Shift_Del	A	-	p.I112fs
COAD	TCGA-D5-6930-01	ODF2	ENST00000469582.2,ENST00000351030.3,ENST00000372807.5	chr9	131221845:131221936:131223220:131223346:131231461:131231513,131222837:131222945:131223220:131223346:131231461:131231513,	131223221	131223346	131223302	131223302	Frame_Shift_Del	C	-	p.M68fs
COAD	TCGA-CM-4743-01	OLA1	ENST00000428402.2	chr2	175094071:175094179:175111442:175111543:175113179:175113203,	175111443	175111543	175111530	175111530	Frame_Shift_Del	T	-	p.K5fs
COAD	TCGA-D5-6928-01	OLFML2A	ENST00000373580.3,ENST00000288815.5	chr9	127563692:127563942:127566372:127566621:127570059:127570245,	127566373	127566621	127566426	127566429	Frame_Shift_Del	GGCA	-	p.324_325del
COAD	TCGA-D5-6927-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145109714:145109816:145109931:145110092:145110690:145110842,	145109932	145110092	145109979	145109979	Frame_Shift_Del	G	-	p.H788fs
COAD	TCGA-AD-5900-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151191	13151192	Frame_Shift_Ins	-	C	p.G23fs
COAD	TCGA-CM-5861-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151191	13151192	Frame_Shift_Ins	-	C	p.G23fs
COAD	TCGA-D5-6540-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.G23fs
COAD	TCGA-AD-5900-01	ORC5	ENST00000422497.1,ENST00000297431.4,ENST00000545943.1	chr7	103801519:103801630:103805682:103805730:103807219:103807248,	103805683	103805730	103805691	103805692	Frame_Shift_Ins	-	T	p.H344fs
COAD	TCGA-CM-6171-01	ORC5	ENST00000422497.1,ENST00000297431.4,ENST00000545943.1	chr7	103801519:103801630:103805682:103805730:103807219:103807248,	103805683	103805730	103805692	103805692	Frame_Shift_Del	T	-	p.H344fs
COAD	TCGA-AD-6964-01	OSBPL5	ENST00000525498.1,ENST00000534491.1,ENST00000389989.3,ENST00000263650.7,ENST00000348039.5	chr11	3125422:3125607:3128492:3128685:3129000:3129175,	3128493	3128685	3128630	3128631	Frame_Shift_Del	TC	-	p.308_308del
COAD	TCGA-G4-6586-01	OSCP1	ENST00000356637.5,ENST00000433045.2,ENST00000235532.5	chr1	36884591:36884655:36886076:36886216:36887750:36887782,	36886077	36886216	36886151	36886151	Frame_Shift_Del	C	-	p.M296fs
COAD	TCGA-AD-6889-01	OSGEPL1	ENST00000264151.5	chr2	190611385:190611894:190615275:190615382:190617378:190617450,	190615276	190615382	190615331	190615331	Frame_Shift_Del	T	-	p.V407fs
COAD	TCGA-AA-3492-01	OSMR	ENST00000274276.3	chr5	38921719:38921896:38923251:38923356:38924523:38924697,	38923252	38923356	38923329	38923329	Frame_Shift_Del	A	-	p.E614fs
COAD	TCGA-AZ-4615-01	OSMR	ENST00000274276.3	chr5	38921719:38921896:38923251:38923356:38924523:38924697,	38923252	38923356	38923329	38923329	Frame_Shift_Del	A	-	p.E614fs
COAD	TCGA-A6-5665-01	OSTF1	ENST00000346234.6	chr9	77752453:77752532:77755749:77755848:77761598:77762181,	77755750	77755848	77755830	77755830	Frame_Shift_Del	A	-	p.L189fs
COAD	TCGA-AZ-6598-01	OSTM1	ENST00000193322.3,ENST00000440575.2	chr6	108370456:108370622:108372234:108372402:108375693:108375791,	108372235	108372402	108372296	108372297	Frame_Shift_Ins	-	T	p.M241fs
COAD	TCGA-CM-6171-01	OSTM1	ENST00000193322.3,ENST00000440575.2	chr6	108370456:108370622:108372234:108372402:108375693:108375791,	108372235	108372402	108372296	108372297	Frame_Shift_Ins	-	T	p.M241fs
COAD	TCGA-AD-6889-01	OSTM1	ENST00000193322.3,ENST00000440575.2	chr6	108370456:108370622:108372234:108372402:108375693:108375791,	108372235	108372402	108372297	108372297	Frame_Shift_Del	T	-	p.M241fs
COAD	TCGA-AD-6889-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
COAD	TCGA-AD-6889-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
COAD	TCGA-D5-6540-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
COAD	TCGA-D5-6540-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
COAD	TCGA-AA-3663-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959047	111959047	Frame_Shift_Del	C	-	p.A352fs
COAD	TCGA-AD-6889-01	OVGP1	ENST00000369732.3	chr1	111963897:111964083:111964186:111964295:111965548:111965673,	111964187	111964295	111964219	111964219	Frame_Shift_Del	G	-	p.L229fs
COAD	TCGA-AD-6889-01	OVGP1	ENST00000481495.1	chr1	111962231:111962348:111963897:111964295:111965548:111965673,	111963898	111964295	111964219	111964219	Frame_Shift_Del	G	-	p.L229fs
COAD	TCGA-AM-5820-01	OXA1L	ENST00000481218.1,ENST00000285848.5,ENST00000604262.1,ENST00000431881.2,ENST00000442110.1,ENST00000412791.1,ENST00000358043.5	chr14	23236526:23236618:23237166:23237380:23238999:23239143,	23237167	23237380	23237363	23237363	Frame_Shift_Del	G	-	p.W201fs
COAD	TCGA-AD-5900-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833042	25833043	Frame_Shift_Ins	-	T	p.P177fs
COAD	TCGA-CM-4746-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833043	25833043	Frame_Shift_Del	T	-	p.P177fs
COAD	TCGA-AD-6895-01	P2RX7	ENST00000539695.1	chr12	121598704:121598777:121600073:121600323:121603159:121603240,	121600074	121600323	121600317	121600317	Frame_Shift_Del	C	-	p.A176fs
COAD	TCGA-AD-6895-01	P2RX7	ENST00000535250.1,ENST00000541564.1,ENST00000546057.1,ENST00000535600.1,ENST00000538011.1,ENST00000539606.1,ENST00000377162.2,ENST00000537312.1,ENST00000443520.3	chr12	121598704:121598777:121600226:121600323:121603159:121603240,	121600227	121600323	121600317	121600317	Frame_Shift_Del	C	-	p.A176fs
COAD	TCGA-AA-3492-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79803535:79803618:79803746:79803867:79804304:79804383,	79803747	79803867	79803764	79803764	Frame_Shift_Del	T	-	p.N387fs
COAD	TCGA-F4-6856-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79803535:79803618:79803746:79803867:79804304:79804383,	79803747	79803867	79803764	79803764	Frame_Shift_Del	T	-	p.N387fs
COAD	TCGA-G4-6628-01	PABPC1L	ENST00000476056.1	chr20	43559161:43559367:43561697:43561826:43564031:43564138,	43561698	43561826	43561750	43561750	Frame_Shift_Del	C	-	p.R456fs
COAD	TCGA-G4-6628-01	PABPC1L	ENST00000537323.1	chr20	43559161:43559367:43561712:43561826:43564031:43564138,	43561713	43561826	43561750	43561750	Frame_Shift_Del	C	-	p.R456fs
COAD	TCGA-D5-6540-01	PACRG	ENST00000366888.2,ENST00000337019.3,ENST00000366889.2	chr6	163149191:163149423:163235178:163235313:163483181:163483353,	163235179	163235313	163235223	163235224	Frame_Shift_Ins	-	A	p.T67fs
COAD	TCGA-G4-6586-01	PAK2	ENST00000426668.1,ENST00000327134.3	chr3	196541321:196541439:196544927:196545027:196547241:196547438,	196544928	196545027	196544982	196544982	Frame_Shift_Del	A	-	p.I369fs
COAD	TCGA-CM-6171-01	PAK4	ENST00000358301.3,ENST00000435673.2,ENST00000593690.1,ENST00000360442.3	chr19	39660171:39660397:39663557:39664016:39664215:39664291,	39663558	39664016	39663913	39663913	Frame_Shift_Del	C	-	p.T187fs
COAD	TCGA-G4-6628-01	PAK4	ENST00000358301.3,ENST00000435673.2,ENST00000593690.1,ENST00000360442.3	chr19	39660171:39660397:39663557:39664016:39664215:39664291,	39663558	39664016	39663913	39663913	Frame_Shift_Del	C	-	p.T187fs
COAD	TCGA-A6-6653-01	PALB2	ENST00000261584.4,ENST00000568219.1	chr16	23625324:23625412:23632682:23632799:23634289:23634451,	23632683	23632799	23632778	23632779	Frame_Shift_Ins	-	A	p.L1006fs
COAD	TCGA-A6-6780-01	PAM	ENST00000438793.3,ENST00000346918.2,ENST00000274392.9,ENST00000345721.2,ENST00000304400.7,ENST00000379787.4,ENST00000455264.2,ENST00000379799.3	chr5	102296867:102296933:102309819:102310140:102325975:102326105,	102309820	102310140	102309948	102309949	Frame_Shift_Ins	-	A	p.Q431fs
COAD	TCGA-A6-5665-01	PAPOLG	ENST00000238714.3,ENST00000414060.1,ENST00000453839.1	chr2	61021105:61021326:61021844:61021910:61022098:61022155,	61021845	61021910	61021894	61021895	Frame_Shift_Ins	-	A	p.R680fs
COAD	TCGA-AA-3492-01	PARK7	ENST00000493373.1,ENST00000377488.1,ENST00000377491.1,ENST00000338639.5,ENST00000465354.1,ENST00000493678.1,ENST00000497113.1	chr1	8022826:8022935:8025383:8025485:8030953:8031023,8022826:8022935:8025383:8025485:8029404:8029464,	8025384	8025485	8025476	8025476	Frame_Shift_Del	A	-	p.A61fs
COAD	TCGA-CM-5861-01	PARP10	ENST00000313028.7,ENST00000527262.1,ENST00000533665.1,ENST00000524918.1,ENST00000525773.1	chr8	145059150:145059496:145059579:145059816:145059888:145060143,	145059580	145059816	145059647	145059647	Frame_Shift_Del	C	-	p.P203fs
COAD	TCGA-G4-6628-01	PARP12	ENST00000473341.1	chr7	139728412:139728488:139734034:139734131:139737514:139737656,139728412:139728488:139734034:139734131:139754461:139754522,139728412:139728488:139734034:139734131:139741443:139741528,	139734035	139734131	139734092	139734092	Frame_Shift_Del	T	-	p.K455fs
COAD	TCGA-AZ-6600-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437235	122437236	Frame_Shift_Ins	-	A	p.Q1413fs
COAD	TCGA-AU-6004-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50090040:50090166:50090686:50091251:50092815:50092866,	50090687	50091251	50091092	50091093	Frame_Shift_Ins	-	A	p.L423fs
COAD	TCGA-A6-6142-01	PARPBP	ENST00000417507.2	chr12	102572369:102572548:102576326:102576405:102589089:102589225,102559506:102559661:102576326:102576405:102589728:102589865,	102576327	102576405	102576394	102576394	Frame_Shift_Del	A	-	p.E417fs
COAD	TCGA-G4-6588-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P375fs
COAD	TCGA-A6-6781-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
COAD	TCGA-CM-4743-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
COAD	TCGA-CM-4746-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
COAD	TCGA-CK-5913-01	PAX8	ENST00000348715.5,ENST00000263334.5	chr2	113984731:113984833:113992970:113993080:113994177:113994269,	113992971	113993080	113993069	113993069	Frame_Shift_Del	A	-	p.L330fs
COAD	TCGA-CK-5913-01	PAX8	ENST00000497038.2,ENST00000485840.1,ENST00000429538.3	chr2	113984731:113984833:113992970:113993159:113994177:113994269,	113992971	113993159	113993069	113993069	Frame_Shift_Del	A	-	p.L330fs
COAD	TCGA-CK-5916-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678784	52678784	Frame_Shift_Del	T	-	p.I279fs
COAD	TCGA-A6-5665-01	PBX1	ENST00000559240.1,ENST00000340699.3,ENST00000367897.1,ENST00000540236.1,ENST00000401534.1,ENST00000420696.2	chr1	164529059:164529250:164532474:164532548:164761730:164761975,	164532475	164532548	164532540	164532540	Frame_Shift_Del	A	-	p.E86fs
COAD	TCGA-AA-3492-01	PCBP2	ENST00000546652.2	chr12	53856297:53856351:53858543:53858636:53859715:53859756,53856297:53856351:53858543:53858636:53861004:53861069,	53858544	53858636	53858557	53858557	Frame_Shift_Del	C	-	p.T198fs
COAD	TCGA-A6-5665-01	PCCB	ENST00000483687.1	chr3	135975396:135975465:135980793:135980907:136002678:136002743,	135980794	135980907	135980817	135980817	Frame_Shift_Del	G	-	p.V151fs
COAD	TCGA-AA-3492-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.K1028fs
COAD	TCGA-F4-6856-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138450998	138450998	Frame_Shift_Del	T	-	p.R749fs
COAD	TCGA-AY-6197-01	PCM1	ENST00000519253.1,ENST00000325083.8,ENST00000524226.1	chr8	17817823:17817953:17819542:17819683:17820609:17820800,	17819543	17819683	17819576	17819576	Frame_Shift_Del	A	-	p.T785fs
COAD	TCGA-AD-5900-01	PCSK7	ENST00000540028.1,ENST00000534529.1,ENST00000320934.3,ENST00000527037.1	chr11	117078685:117078780:117079612:117079769:117089181:117089284,	117079613	117079769	117079626	117079626	Frame_Shift_Del	G	-	p.R560fs
COAD	TCGA-AD-5900-01	PCSK7	ENST00000533135.1	chr11	117078685:117078780:117079612:117079762:117089181:117089284,	117079613	117079762	117079626	117079626	Frame_Shift_Del	G	-	p.R560fs
COAD	TCGA-G4-6588-01	PCYT1A	ENST00000292823.2,ENST00000431016.1,ENST00000419333.1	chr3	195965661:195965765:195966417:195966606:195968818:195968941,	195966418	195966606	195966473	195966473	Frame_Shift_Del	T	-	p.K281fs
COAD	TCGA-F4-6570-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000459659.1,ENST00000484478.1	chr3	33863526:33863574:33866678:33866832:33867971:33868031,	33866679	33866832	33866811	33866811	Frame_Shift_Del	T	-	p.V198fs
COAD	TCGA-A6-5665-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000503412.1,ENST00000354960.3	chr4	120422324:120422408:120423735:120423810:120425690:120425754,	120423736	120423810	120423759	120423760	Frame_Shift_Ins	-	TC	p.K753fs
COAD	TCGA-G4-6309-01	PDE9A	ENST00000335512.4,ENST00000398227.3,ENST00000490803.1,ENST00000467403.1,ENST00000335440.6,ENST00000470987.1,ENST00000398229.3,ENST00000539837.1,ENST00000398225.3,ENST00000460989.1,ENST00000468805.1,ENST00000398224.3,ENST00000380328.2,ENST00000398234.3,ENST00000349112.3,ENST00000398232.3,ENST00000495343.1,ENST00000495521.1,ENST00000328862.6,ENST00000462571.1,ENST00000489319.1,ENST00000398236.3,ENST00000291539.6,ENST00000497805.1	chr21	44190812:44190908:44192548:44192630:44195389:44195616,	44192549	44192630	44192596	44192597	Frame_Shift_Ins	-	AG	p.S444fs
COAD	TCGA-D5-6930-01	PDIA2	ENST00000404312.1,ENST00000467212.1,ENST00000219406.6	chr16	335311:335437:335505:335703:336352:336473,	335506	335703	335638	335638	Frame_Shift_Del	G	-	p.D351fs
COAD	TCGA-G4-6298-01	PDIA2	ENST00000404312.1,ENST00000482665.1,ENST00000435833.1,ENST00000467212.1,ENST00000219406.6	chr16	336553:336735:336834:336945:337068:337114,	336835	336945	336888	336889	Frame_Shift_Ins	-	A	p.D492fs
COAD	TCGA-CM-5861-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44055274:44055404:44057647:44057764:44058084:44058210,	44057648	44057764	44057718	44057719	Frame_Shift_Ins	-	A	p.Q225fs
COAD	TCGA-A6-5661-01	PDIK1L	ENST00000374269.1	chr1	26438339:26438406:26440782:26441084:26448327:26448615,	26440783	26441084	26440923	26440924	Frame_Shift_Del	CA	-	p.41_42del
COAD	TCGA-A6-6653-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089075	32089076	Frame_Shift_Ins	-	A	p.Q1841fs
COAD	TCGA-A6-6780-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089075	32089076	Frame_Shift_Ins	-	A	p.Q1841fs
COAD	TCGA-AD-6964-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089076	32089076	Frame_Shift_Del	A	-	p.Q1841fs
COAD	TCGA-F4-6570-01	PDZD4	ENST00000393758.2	chrX	153072196:153072295:153072733:153072824:153073814:153074050,153072196:153072295:153072733:153072824:153073796:153074050,	153072734	153072824	153072819	153072819	Frame_Shift_Del	G	-	p.P101fs
COAD	TCGA-A6-6780-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425467	77425467	Frame_Shift_Del	A	-	p.G1320fs
COAD	TCGA-F4-6459-01	PGAP3	ENST00000579146.1	chr17	37832866:37833008:37840849:37841002:37842174:37842272,37830869:37830932:37840849:37841002:37844086:37844254,37830869:37830932:37840849:37841002:37842174:37842272,37829028:37829119:37840849:37841002:37842174:37842272,	37840850	37841002	37840912	37840912	Frame_Shift_Del	G	-	p.R124fs
COAD	TCGA-CM-4743-01	PGBD5	ENST00000321327.2,ENST00000530424.1,ENST00000525115.1,ENST00000391860.1	chr1	230459287:230459366:230461055:230461161:230468589:230468787,	230461056	230461161	230461134	230461135	Frame_Shift_Ins	-	C	p.E434fs
COAD	TCGA-AD-6964-01	PGGT1B	ENST00000514178.1,ENST00000419445.1	chr5	114552561:114552670:114557520:114557705:114566672:114566718,	114557521	114557705	114557642	114557643	Frame_Shift_Ins	-	A	p.S241fs
COAD	TCGA-CK-5916-01	PGS1	ENST00000589426.1	chr17	76396911:76396936:76399648:76400170:76410959:76411108,76396911:76396936:76399648:76400170:76411032:76411108,	76399649	76400170	76400034	76400034	Frame_Shift_Del	G	-	p.K422fs
COAD	TCGA-AU-6004-01	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081695	144081696	Frame_Shift_Ins	-	A	p.I193fs
COAD	TCGA-AZ-4615-01	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081696	144081696	Frame_Shift_Del	A	-	p.I193fs
COAD	TCGA-AZ-6598-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086745	144086746	Frame_Shift_Ins	-	C	p.A257fs
COAD	TCGA-CM-5861-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086745	144086746	Frame_Shift_Ins	-	C	p.A257fs
COAD	TCGA-AA-3663-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086746	144086746	Frame_Shift_Del	C	-	p.A257fs
COAD	TCGA-AZ-4615-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800272	28800273	Frame_Shift_Ins	-	C	p.S344fs
COAD	TCGA-AY-6197-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800273	28800273	Frame_Shift_Del	C	-	p.S344fs
COAD	TCGA-A6-5665-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800457	28800458	Frame_Shift_Ins	-	C	p.E405fs
COAD	TCGA-D5-6529-01	PHC2	ENST00000486897.1,ENST00000485928.1	chr1	33796964:33797063:33797875:33798005:33799785:33799891,	33797876	33798005	33797949	33797950	Frame_Shift_Ins	-	AACCC	p.F70fs
COAD	TCGA-AZ-6598-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022287	11022287	Frame_Shift_Del	A	-	p.E134fs
COAD	TCGA-D5-6928-01	PHF1	ENST00000487667.1,ENST00000495509.2,ENST00000486845.1,ENST00000374516.3	chr6	33383037:33383106:33383366:33383447:33383586:33383648,	33383367	33383447	33383436	33383437	Frame_Shift_Ins	-	C	p.D433fs
COAD	TCGA-A6-6781-01	PHF20	ENST00000481202.1,ENST00000439301.1,ENST00000374012.3	chr20	34359947:34360001:34389412:34389527:34430494:34430666,	34389413	34389527	34389518	34389519	Frame_Shift_Ins	-	A	p.L25fs
COAD	TCGA-CM-5861-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.Q319fs
COAD	TCGA-D5-6930-01	PHF21A	ENST00000323180.6,ENST00000257821.4	chr11	45991365:45991452:45992666:45992918:46001310:46001517,45991365:45991455:45992666:45992918:46001310:46001517,	45992667	45992918	45992680	45992680	Frame_Shift_Del	T	-	p.N200fs
COAD	TCGA-G4-6628-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394097	64394097	Frame_Shift_Del	A	-	p.T158fs
COAD	TCGA-CM-6674-01	PHF7	ENST00000498509.2,ENST00000347025.2,ENST00000472337.1,ENST00000461861.1,ENST00000327906.3	chr3	52453935:52453950:52454326:52454451:52454918:52455011,	52454327	52454451	52454435	52454435	Frame_Shift_Del	T	-	p.Q132fs
COAD	TCGA-A6-5665-01	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000431670.2,ENST00000412622.1,ENST00000495180.1,ENST00000486886.1	chr3	111685459:111685550:111686524:111686671:111688536:111688696,	111686525	111686671	111686543	111686543	Frame_Shift_Del	A	-	p.A1046fs
COAD	TCGA-AA-3492-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60630600:60630705:60639746:60639941:60642629:60642858,	60639747	60639941	60639886	60639887	Frame_Shift_Ins	-	A	p.Q1234fs
COAD	TCGA-AD-6964-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60630600:60630705:60639746:60639941:60642629:60642858,	60639747	60639941	60639886	60639887	Frame_Shift_Ins	-	A	p.Q1234fs
COAD	TCGA-G4-6628-01	PHYH	ENST00000263038.4,ENST00000479604.1,ENST00000453759.2,ENST00000396913.2,ENST00000396920.3	chr10	13333830:13333912:13336427:13336596:13337495:13337606,	13336428	13336596	13336430	13336431	Frame_Shift_Ins	-	G	p.E38fs
COAD	TCGA-AZ-6598-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21088330:21088482:21088682:21088841:21096515:21096643,	21088683	21088841	21088699	21088700	Frame_Shift_Ins	-	G	p.H47fs
COAD	TCGA-AA-3492-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21088330:21088482:21088682:21088841:21096515:21096643,	21088683	21088841	21088700	21088700	Frame_Shift_Del	G	-	p.H47fs
COAD	TCGA-AD-6889-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21088330:21088482:21088682:21088841:21096515:21096643,	21088683	21088841	21088713	21088713	Frame_Shift_Del	G	-	p.E43fs
COAD	TCGA-A6-5665-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288150	151288150	Frame_Shift_Del	T	-	p.R270fs
COAD	TCGA-AZ-6605-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288877	151288877	Frame_Shift_Del	C	-	p.S28fs
COAD	TCGA-G4-6588-01	PIAS3	ENST00000393046.2,ENST00000369298.1,ENST00000369299.3,ENST00000498436.1,ENST00000393045.2	chr1	145578949:145579000:145579241:145579332:145580187:145580322,	145579242	145579332	145579323	145579323	Frame_Shift_Del	C	-	p.C220fs
COAD	TCGA-G4-6628-01	PICK1	ENST00000466374.1,ENST00000356976.3,ENST00000424694.1,ENST00000484021.1,ENST00000468288.1,ENST00000435166.1,ENST00000437453.1,ENST00000404072.3	chr22	38455240:38455352:38461008:38461137:38463710:38463777,	38461009	38461137	38461095	38461096	Frame_Shift_Ins	-	A	p.G80fs
COAD	TCGA-A6-5661-01	PIEZO2	ENST00000538948.1,ENST00000285141.4,ENST00000503781.3,ENST00000579151.1,ENST00000580640.1,ENST00000582913.1,ENST00000302079.6	chr18	10677743:10677872:10680195:10680368:10681657:10681725,	10680196	10680368	10680336	10680336	Frame_Shift_Del	T	-	p.E2492fs
COAD	TCGA-G4-6628-01	PIF1	ENST00000559239.1,ENST00000268043.4,ENST00000333425.6	chr15	65110455:65110543:65111315:65111422:65113180:65113287,65110455:65110543:65111315:65111422:65112045:65112185,	65111316	65111422	65111321	65111321	Frame_Shift_Del	C	-	p.A479fs
COAD	TCGA-CM-6678-01	PIGA	ENST00000474662.1	chrX	15344035:15344168:15349711:15350114:15353622:15353645,	15349712	15350114	15349975	15349975	Frame_Shift_Del	G	-	p.T27fs
COAD	TCGA-CM-6678-01	PIGA	ENST00000333590.4	chrX	15344035:15344168:15349337:15350114:15353622:15353645,	15349338	15350114	15349975	15349975	Frame_Shift_Del	G	-	p.T27fs
COAD	TCGA-AA-3663-01	PIGG	ENST00000506402.1,ENST00000310340.5,ENST00000296306.7,ENST00000503111.1,ENST00000453061.2,ENST00000504346.1,ENST00000509768.1	chr4	494250:494390:499506:499716:501193:501327,	499507	499716	499611	499611	Frame_Shift_Del	A	-	p.G155fs
COAD	TCGA-CK-5916-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091523	35091523	Frame_Shift_Del	G	-	p.T788fs
COAD	TCGA-AD-6901-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091693	35091693	Frame_Shift_Del	G	-	p.R731fs
COAD	TCGA-AD-6889-01	PIH1D2	ENST00000431456.1,ENST00000532211.1,ENST00000530641.1,ENST00000528775.1,ENST00000280350.4	chr11	111941159:111941425:111941761:111942007:111942358:111942482,	111941762	111942007	111941932	111941932	Frame_Shift_Del	T	-	p.N126fs
COAD	TCGA-AD-6889-01	PIH1D2	ENST00000525072.1	chr11	111941159:111941425:111941761:111941956:111942358:111942482,	111941762	111941956	111941932	111941932	Frame_Shift_Del	T	-	p.N126fs
COAD	TCGA-A6-6780-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589609	67589610	Frame_Shift_Ins	-	A	p.E188fs
COAD	TCGA-DM-A1DB-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591257	Frame_Shift_Del	GTTTTTCAGGTG	-	p.582_583del
COAD	TCGA-A6-6780-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.P314fs
COAD	TCGA-AD-6964-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830828	22830828	Frame_Shift_Del	G	-	p.P314fs
COAD	TCGA-G4-6588-01	PIP5K1C	ENST00000335312.3	chr19	3632873:3633167:3633434:3633518:3638881:3639014,	3633435	3633518	3633460	3633460	Frame_Shift_Del	G	-	p.P660fs
COAD	TCGA-AA-3663-01	PITPNM1	ENST00000534749.1,ENST00000356404.3	chr11	67263648:67263816:67264701:67264907:67264992:67265150,67263648:67263819:67264701:67264907:67264992:67265150,	67264702	67264907	67264892	67264892	Frame_Shift_Del	G	-	p.A653fs
COAD	TCGA-AZ-4615-01	PKD1	ENST00000472659.1,ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2143670:2143739:2143811:2144014:2144092:2144147,	2143812	2144014	2143888	2143888	Frame_Shift_Del	G	-	p.P3582fs
COAD	TCGA-AZ-4615-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562741	14562741	Frame_Shift_Del	C	-	p.R357fs
COAD	TCGA-CK-5916-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206848	89206848	Frame_Shift_Del	A	-	p.D75fs
COAD	TCGA-AU-6004-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.W230fs
COAD	TCGA-AU-6004-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.W230fs
COAD	TCGA-AU-6004-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.W230fs
COAD	TCGA-CK-5916-01	PLA2G4A	ENST00000367466.3	chr1	186880379:186880521:186901894:186902031:186908139:186908362,	186901895	186902031	186901925	186901925	Frame_Shift_Del	G	-	p.G196fs
COAD	TCGA-AD-6895-01	PLAA	ENST00000397292.3,ENST00000487173.1,ENST00000520884.1	chr9	26907831:26907996:26910335:26910437:26913876:26913945,	26910336	26910437	26910389	26910392	Frame_Shift_Del	AAAT	-	p.534_535del
COAD	TCGA-AY-6197-01	PLB1	ENST00000404858.1,ENST00000422425.2	chr2	28802493:28802574:28805271:28805372:28808627:28808709,	28805272	28805372	28805341	28805341	Frame_Shift_Del	A	-	p.E556fs
COAD	TCGA-AA-3492-01	PLCG2	ENST00000567980.1,ENST00000359376.3,ENST00000570198.1	chr16	81929411:81929532:81934216:81934385:81939007:81939112,	81934217	81934385	81934352	81934353	Frame_Shift_Ins	-	C	p.S443fs
COAD	TCGA-G4-6586-01	PLCG2	ENST00000563269.1,ENST00000359376.3	chr16	81965101:81965259:81968033:81968136:81969773:81969815,	81968034	81968136	81968118	81968118	Frame_Shift_Del	A	-	p.S941fs
COAD	TCGA-A6-6780-01	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000435379.1,ENST00000538330.1,ENST00000539875.1,ENST00000543219.1,ENST00000318197.6	chr12	18837063:18837213:18841022:18841152:18847843:18847978,	18841023	18841152	18841024	18841025	Frame_Shift_Ins	-	T	p.N530fs
COAD	TCGA-AM-5820-01	PLEKHA6	ENST00000414478.1	chr1	204230465:204230636:204234069:204234170:204236602:204236675,	204234070	204234170	204234135	204234135	Frame_Shift_Del	G	-	p.L106fs
COAD	TCGA-D5-6930-01	PLEKHG4	ENST00000563969.1,ENST00000450733.1,ENST00000379344.3,ENST00000427155.2,ENST00000360461.5	chr16	67316644:67316761:67318177:67318360:67318615:67319118,	67318178	67318360	67318243	67318243	Frame_Shift_Del	C	-	p.D525fs
COAD	TCGA-AD-6964-01	PLEKHG6	ENST00000011684.7,ENST00000449001.2,ENST00000304581.8,ENST00000396988.3	chr12	6435593:6435739:6436419:6437112:6437301:6437651,	6436420	6437112	6436542	6436543	Frame_Shift_Ins	-	A	p.P598fs
COAD	TCGA-AD-6895-01	PLEKHG6	ENST00000011684.7,ENST00000449001.2,ENST00000304581.8,ENST00000396988.3	chr12	6435593:6435739:6436419:6437112:6437301:6437651,	6436420	6437112	6436855	6436856	Frame_Shift_Del	CT	-	p.702_702del
COAD	TCGA-CM-4743-01	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927259	43927259	Frame_Shift_Del	A	-	p.N387fs
COAD	TCGA-D5-6930-01	PLEKHM2	ENST00000375799.3,ENST00000375793.2,ENST00000477849.1	chr1	16056339:16056424:16057026:16057217:16057686:16057752,	16057027	16057217	16057117	16057117	Frame_Shift_Del	C	-	p.S766fs
COAD	TCGA-A6-6781-01	PLGRKT	ENST00000223864.2	chr9	5361077:5361187:5361757:5361888:5431896:5431983,	5361758	5361888	5361787	5361787	Frame_Shift_Del	A	-	p.G62fs
COAD	TCGA-AD-6889-01	PLK3	ENST00000465443.1,ENST00000372201.4	chr1	45268626:45268825:45268939:45269063:45269271:45269293,	45268940	45269063	45268997	45268997	Frame_Shift_Del	C	-	p.T335fs
COAD	TCGA-AZ-4615-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1,ENST00000469350.1	chr3	145824318:145824431:145828071:145828235:145838898:145839035,	145828072	145828235	145828190	145828190	Frame_Shift_Del	T	-	p.F129fs
COAD	TCGA-AA-3663-01	PLXNA3	ENST00000369682.3	chrX	153692791:153692844:153693096:153693211:153693360:153693561,	153693097	153693211	153693166	153693166	Frame_Shift_Del	C	-	p.R666fs
COAD	TCGA-CK-5916-01	PLXND1	ENST00000324093.4,ENST00000393239.1	chr3	129286540:129286648:129288685:129288800:129289628:129289778,	129288686	129288800	129288750	129288751	Frame_Shift_Ins	-	C	p.G1267fs
COAD	TCGA-G4-6628-01	PM20D2	ENST00000275072.4	chr6	89862761:89862904:89864466:89864621:89868043:89868179,	89864467	89864621	89864474	89864474	Frame_Shift_Del	A	-	p.I255fs
COAD	TCGA-A6-5661-01	PM20D2	ENST00000275072.4	chr6	89862761:89862904:89864466:89864621:89868043:89868179,	89864467	89864621	89864571	89864571	Frame_Shift_Del	A	-	p.T287fs
COAD	TCGA-A6-5665-01	PMEL	ENST00000449260.2,ENST00000552882.1,ENST00000548747.1,ENST00000360714.4,ENST00000539511.1,ENST00000546543.1,ENST00000536427.1,ENST00000550464.1,ENST00000549404.1,ENST00000556802.1,ENST00000548493.1	chr12	56351264:56351455:56351706:56351868:56352256:56352387,	56351707	56351868	56351789	56351790	Frame_Shift_Ins	-	GT	p.T183fs
COAD	TCGA-G4-6628-01	PNCK	ENST00000370142.1,ENST00000466074.1,ENST00000472324.1,ENST00000393831.2,ENST00000447676.2,ENST00000340888.3,ENST00000370145.4	chrX	152935187:152935581:152935904:152936049:152936198:152936269,152935474:152935585:152935904:152936049:152936198:152936269,	152935905	152936049	152935920	152935921	Frame_Shift_Ins	-	G	p.K359fs
COAD	TCGA-AD-6889-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99857048:99857220:99858616:99858840:99860426:99860615,	99858617	99858840	99858807	99858807	Frame_Shift_Del	G	-	p.P104fs
COAD	TCGA-CM-6171-01	PNLDC1	ENST00000275275.5,ENST00000610273.1	chr6	160221305:160221415:160221704:160221861:160222144:160222218,	160221705	160221861	160221785	160221785	Frame_Shift_Del	T	-	p.L8fs
COAD	TCGA-G4-6628-01	PNLIP	ENST00000369221.2	chr10	118307871:118307994:118310609:118310744:118313238:118313350,	118310610	118310744	118310725	118310726	Frame_Shift_Ins	-	T	p.Y147fs
COAD	TCGA-G4-6628-01	PNPLA5	ENST00000216177.4	chr22	44285678:44285744:44286941:44287174:44287567:44287875,	44286942	44287174	44287049	44287050	Frame_Shift_Ins	-	G	p.D107fs
COAD	TCGA-A6-5665-01	POLD1	ENST00000440232.2,ENST00000593981.1,ENST00000599857.1,ENST00000595904.1	chr19	50918694:50918847:50918980:50919083:50919652:50919785,	50918981	50919083	50919053	50919054	Frame_Shift_Ins	-	A	p.A930fs
COAD	TCGA-F4-6570-01	POLDIP3	ENST00000451060.2	chr22	42983511:42983578:42987960:42988090:42991542:42991609,42981892:42981974:42987960:42988090:42991542:42991609,	42987961	42988090	42988072	42988073	Frame_Shift_Del	CA	-	p.275_275del
COAD	TCGA-A6-5665-01	POLR2F	ENST00000407936.1,ENST00000606538.1,ENST00000443002.1,ENST00000405557.1,ENST00000484894.1,ENST00000470701.1,ENST00000442738.2	chr22	38352779:38352908:38355352:38355483:38363105:38363177,38352779:38352849:38355352:38355483:38363105:38363177,	38355353	38355483	38355378	38355379	Frame_Shift_Ins	-	C	p.L39fs
COAD	TCGA-G4-6588-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339834	22339834	Frame_Shift_Del	C	-	p.F587fs
COAD	TCGA-D5-6540-01	POMGNT1	ENST00000371992.1,ENST00000535522.1,ENST00000371984.3,ENST00000371986.3	chr1	46658976:46659060:46659235:46659311:46659526:46659597,	46659236	46659311	46659280	46659280	Frame_Shift_Del	C	-	p.V328fs
COAD	TCGA-AM-5820-01	POMZP3	ENST00000441393.1	chr7	76239344:76239532:76240770:76240944:76241038:76241130,	76240771	76240944	76240786	76240786	Frame_Shift_Del	A	-	p.L187fs
COAD	TCGA-AM-5820-01	POMZP3	ENST00000310842.4,ENST00000424818.1	chr7	76239344:76239532:76240770:76240908:76241038:76241130,	76240771	76240908	76240786	76240786	Frame_Shift_Del	A	-	p.L187fs
COAD	TCGA-AA-3713-01	POR	ENST00000454934.1,ENST00000496888.1,ENST00000450476.1,ENST00000545601.1,ENST00000419840.1,ENST00000461988.1,ENST00000439269.1,ENST00000447222.1,ENST00000394893.1	chr7	75614094:75614276:75614375:75614525:75614896:75615031,	75614376	75614525	75614451	75614451	Frame_Shift_Del	C	-	p.R441fs
COAD	TCGA-F4-6856-01	PPARA	ENST00000407236.1,ENST00000396000.2,ENST00000402126.1,ENST00000262735.5	chr22	46614159:46614298:46615708:46615911:46627688:46628136,	46615709	46615911	46615783	46615784	Frame_Shift_Del	AT	-	p.194_195del
COAD	TCGA-A6-5665-01	PPFIBP1	ENST00000540114.1,ENST00000542629.1,ENST00000537927.1,ENST00000318304.8	chr12	27809548:27809663:27813816:27813878:27817294:27817370,	27813817	27813878	27813837	27813837	Frame_Shift_Del	A	-	p.M308fs
COAD	TCGA-AD-6889-01	PPFIBP2	ENST00000299492.4,ENST00000527790.1	chr11	7570670:7570770:7586783:7586998:7614362:7614455,	7586784	7586998	7586924	7586925	Frame_Shift_Del	GA	-	p.68_69del
COAD	TCGA-AU-6004-01	PPIB	ENST00000561048.1	chr15	64452311:64452396:64454239:64454353:64455050:64455205,	64454240	64454353	64454283	64454284	Frame_Shift_Del	AC	-	p.69_69del
COAD	TCGA-AD-5900-01	PPIE	ENST00000372830.1	chr1	40218581:40218724:40228188:40228323:40229360:40229586,	40228189	40228323	40228230	40228230	Frame_Shift_Del	A	-	p.R293fs
COAD	TCGA-G4-6588-01	PPIL6	ENST00000440797.2,ENST00000447468.3	chr6	109752493:109752548:109757306:109757402:109761658:109761707,	109757307	109757402	109757309	109757309	Frame_Shift_Del	T	-	p.R77fs
COAD	TCGA-AZ-6598-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944499	4944500	Frame_Shift_Ins	-	G	p.T455fs
COAD	TCGA-CM-4743-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944500	Frame_Shift_Del	G	-	p.T455fs
COAD	TCGA-AA-3713-01	PPM1D	ENST00000305921.3	chr17	58725252:58725443:58733959:58734202:58740355:58741834,	58733960	58734202	58733983	58733984	Frame_Shift_Ins	-	A	p.A347fs
COAD	TCGA-DM-A0XD-01	PPM1K	ENST00000508256.1,ENST00000608933.1	chr4	89186152:89186287:89189341:89189486:89189892:89190058,	89189342	89189486	89189443	89189444	Frame_Shift_Ins	-	C	p.Q251fs
COAD	TCGA-AA-3663-01	PPP1R10	ENST00000376511.2	chr6	30568176:30569435:30569712:30570468:30570622:30570736,	30569713	30570468	30570342	30570342	Frame_Shift_Del	C	-	p.G695fs
COAD	TCGA-AU-6004-01	PPP1R10	ENST00000376511.2	chr6	30572364:30572512:30572770:30572871:30573699:30573775,	30572771	30572871	30572795	30572795	Frame_Shift_Del	T	-	p.V311fs
COAD	TCGA-D5-6540-01	PPP1R2	ENST00000438848.1,ENST00000328432.3	chr3	195243722:195243740:195245814:195245982:195250489:195250584,	195245815	195245982	195245976	195245976	Frame_Shift_Del	T	-	p.K137fs
COAD	TCGA-A6-6653-01	PPP2R2A	ENST00000524169.1,ENST00000518890.1,ENST00000315985.7,ENST00000380737.3,ENST00000518215.1	chr8	26220199:26220364:26221236:26221406:26223830:26223922,	26221237	26221406	26221272	26221272	Frame_Shift_Del	T	-	p.S279fs
COAD	TCGA-AU-6004-01	PPP2R2A	ENST00000524169.1,ENST00000518890.1,ENST00000315985.7,ENST00000380737.3,ENST00000518215.1	chr8	26220199:26220364:26221236:26221406:26223830:26223922,	26221237	26221406	26221272	26221272	Frame_Shift_Del	T	-	p.S279fs
COAD	TCGA-AM-5820-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9563375:9563548:9570154:9570681:9577061:9577189,	9570155	9570681	9570385	9570386	Frame_Shift_Del	AA	-	p.431_431del
COAD	TCGA-CM-6674-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000359139.3,ENST00000216061.5	chr22	50832321:50832564:50845117:50845304:50852980:50853118,	50845118	50845304	50845255	50845256	Frame_Shift_Ins	-	T	p.S122fs
COAD	TCGA-AD-6889-01	PPP6R2	ENST00000359139.3,ENST00000427222.2	chr22	50876602:50876727:50877027:50877191:50878129:50878286,50876602:50876727:50877027:50877191:50878126:50878286,	50877028	50877191	50877036	50877036	Frame_Shift_Del	C	-	p.A658fs
COAD	TCGA-AZ-6598-01	PPP6R2	ENST00000359139.3,ENST00000427222.2	chr22	50876602:50876727:50877027:50877191:50878129:50878286,50876602:50876727:50877027:50877191:50878126:50878286,	50877028	50877191	50877036	50877036	Frame_Shift_Del	C	-	p.A658fs
COAD	TCGA-AA-3663-01	PPP6R2	ENST00000359139.3,ENST00000427222.2	chr22	50876602:50876727:50877027:50877191:50878129:50878286,50876602:50876727:50877027:50877191:50878126:50878286,	50877028	50877191	50877166	50877166	Frame_Shift_Del	G	-	p.A701fs
COAD	TCGA-CM-6171-01	PPP6R2	ENST00000216061.5	chr22	50878389:50878478:50879229:50879455:50882294:50882546,	50879230	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.A845fs
COAD	TCGA-CM-6171-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000359139.3,ENST00000401672.3,ENST00000427222.2	chr22	50878389:50878478:50879250:50879455:50882294:50882546,	50879251	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.A845fs
COAD	TCGA-AD-5900-01	PPP6R3	ENST00000534534.1	chr11	68331891:68331900:68334481:68334634:68337215:68337365,68315534:68315672:68334481:68334634:68337215:68337365,	68334482	68334634	68334504	68334504	Frame_Shift_Del	G	-	p.W333fs
COAD	TCGA-AD-5900-01	PPP6R3	ENST00000534190.1	chr11	68331891:68331900:68334466:68334634:68337215:68337365,	68334467	68334634	68334504	68334504	Frame_Shift_Del	G	-	p.W333fs
COAD	TCGA-AM-5820-01	PQBP1	ENST00000465859.1	chrX	48759232:48759319:48759495:48759794:48760008:48760070,	48759496	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.150_151del
COAD	TCGA-AM-5820-01	PQBP1	ENST00000443648.1,ENST00000447146.2,ENST00000473764.1,ENST00000396763.1,ENST00000477997.1,ENST00000474671.1,ENST00000376563.1,ENST00000218224.4	chrX	48759232:48759319:48759509:48759794:48760008:48760070,	48759510	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.150_151del
COAD	TCGA-CM-6674-01	PRDM10	ENST00000423662.2,ENST00000358825.5,ENST00000304538.6,ENST00000526082.1,ENST00000528746.1,ENST00000360871.3	chr11	129812320:129812524:129814665:129814907:129817039:129817187,	129814666	129814907	129814800	129814800	Frame_Shift_Del	G	-	p.L210fs
COAD	TCGA-G4-6299-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108458	14108459	Frame_Shift_Del	GG	-	p.1389_1390del
COAD	TCGA-AD-5900-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14109226	14109226	Frame_Shift_Del	G	-	p.S1645fs
COAD	TCGA-AD-6964-01	PRELID2	ENST00000511435.1,ENST00000334744.4,ENST00000358004.2,ENST00000505416.1,ENST00000515475.1	chr5	145199507:145199581:145202639:145202697:145214739:145214796,	145202640	145202697	145202692	145202692	Frame_Shift_Del	G	-	p.N28fs
COAD	TCGA-AZ-6598-01	PRKAG2	ENST00000491938.1,ENST00000476632.1,ENST00000488258.1,ENST00000493872.1,ENST00000392801.2,ENST00000418337.2,ENST00000492843.1,ENST00000433631.2,ENST00000287878.4	chr7	151271976:151272035:151273456:151273538:151292430:151292537,	151273457	151273538	151273531	151273531	Frame_Shift_Del	T	-	p.K291fs
COAD	TCGA-G4-6628-01	PRKAG2	ENST00000488258.1	chr7	151292430:151292540:151372505:151372723:151478237:151478517,	151372506	151372723	151372596	151372597	Frame_Shift_Ins	-	GG	p.P198fs
COAD	TCGA-G4-6588-01	PRKCA	ENST00000578063.1,ENST00000413366.3	chr17	64492318:64492401:64637472:64637584:64641500:64641629,	64637473	64637584	64637475	64637475	Frame_Shift_Del	C	-	p.D97fs
COAD	TCGA-CM-4746-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998127	169998128	Frame_Shift_Ins	-	A	p.L273fs
COAD	TCGA-G4-6309-01	PRKCSH	ENST00000252455.2,ENST00000587327.1,ENST00000412601.1,ENST00000585325.1,ENST00000591462.1,ENST00000589838.1,ENST00000592741.1	chr19	11557130:11557165:11557888:11557975:11558253:11558305,	11557889	11557975	11557905	11557906	Frame_Shift_Del	AC	-	p.260_260del
COAD	TCGA-CK-5916-01	PRKRIP1	ENST00000496391.1	chr7	102016665:102016769:102036423:102036984:102038066:102038145,	102036424	102036984	102036927	102036927	Frame_Shift_Del	C	-	p.I23fs
COAD	TCGA-AZ-6598-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48080764	48080764	Frame_Shift_Del	T	-	p.E283fs
COAD	TCGA-AZ-4615-01	PRPF3	ENST00000543398.1,ENST00000324862.6,ENST00000414970.2,ENST00000467329.1	chr1	150305449:150305670:150307405:150307712:150310635:150310802,	150307406	150307712	150307605	150307605	Frame_Shift_Del	T	-	p.T309fs
COAD	TCGA-AD-5900-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000567322.1,ENST00000287463.4	chr16	30665550:30665660:30665949:30666535:30666671:30666741,	30665950	30666535	30666120	30666121	Frame_Shift_Ins	-	C	p.S277fs
COAD	TCGA-F4-6570-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000567322.1,ENST00000287463.4	chr16	30665550:30665660:30665949:30666535:30666671:30666741,	30665950	30666535	30666120	30666121	Frame_Shift_Ins	-	C	p.S277fs
COAD	TCGA-G4-6588-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000567322.1,ENST00000287463.4	chr16	30665550:30665660:30665949:30666535:30666671:30666741,	30665950	30666535	30666120	30666121	Frame_Shift_Ins	-	C	p.S277fs
COAD	TCGA-A6-5665-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000567322.1,ENST00000287463.4	chr16	30665550:30665660:30665949:30666535:30666671:30666741,	30665950	30666535	30666121	30666121	Frame_Shift_Del	C	-	p.S277fs
COAD	TCGA-AD-6889-01	PRRG2	ENST00000246794.5,ENST00000597121.1,ENST00000543867.2	chr19	50086819:50086974:50087169:50087209:50091753:50091889,	50087170	50087209	50087198	50087199	Frame_Shift_Ins	-	T	p.N97fs
COAD	TCGA-AZ-6598-01	PRSS16	ENST00000481125.1,ENST00000230582.3	chr6	27218995:27219043:27219528:27219819:27220586:27220728,	27219529	27219819	27219760	27219760	Frame_Shift_Del	G	-	p.L316fs
COAD	TCGA-CM-5861-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151941	31151942	Frame_Shift_Ins	-	G	p.L675fs
COAD	TCGA-AD-6895-01	PSAT1	ENST00000376588.3,ENST00000347159.2	chr9	80916869:80916939:80919650:80919856:80921229:80921402,	80919651	80919856	80919676	80919677	Frame_Shift_Ins	-	T	p.I73fs
COAD	TCGA-AA-3663-01	PSD	ENST00000406432.1,ENST00000020673.5	chr10	104174619:104174986:104175773:104175876:104176141:104176878,	104175774	104175876	104175781	104175781	Frame_Shift_Del	G	-	p.S251fs
COAD	TCGA-CK-5916-01	PSD	ENST00000406432.1,ENST00000020673.5	chr10	104174619:104174986:104175773:104175876:104176141:104176878,	104175774	104175876	104175781	104175781	Frame_Shift_Del	G	-	p.S251fs
COAD	TCGA-AM-5820-01	PSG8	ENST00000306511.4	chr19	43262153:43262432:43268067:43268433:43269669:43269814,	43268068	43268433	43268141	43268141	Frame_Shift_Del	G	-	p.Y120fs
COAD	TCGA-AD-5900-01	PSMD11	ENST00000261712.3,ENST00000457654.2,ENST00000578397.1	chr17	30791538:30791596:30796016:30796211:30800818:30800963,	30796017	30796211	30796174	30796174	Frame_Shift_Del	C	-	p.C202fs
COAD	TCGA-AZ-6598-01	PSMD5	ENST00000373904.5,ENST00000210313.3	chr9	123583632:123583742:123586771:123586963:123589042:123589172,	123586772	123586963	123586946	123586947	Frame_Shift_Ins	-	A	p.G278fs
COAD	TCGA-CK-5913-01	PSMD5	ENST00000373904.5,ENST00000210313.3	chr9	123583632:123583742:123586771:123586963:123589042:123589172,	123586772	123586963	123586946	123586947	Frame_Shift_Ins	-	A	p.G278fs
COAD	TCGA-G4-6586-01	PSMG2	ENST00000317615.6,ENST00000585331.2,ENST00000586445.1,ENST00000590217.1	chr18	12718515:12718634:12720508:12720682:12724497:12724519,	12720509	12720682	12720544	12720544	Frame_Shift_Del	A	-	p.Q117fs
COAD	TCGA-A6-5665-01	PSORS1C1	ENST00000547221.1,ENST00000259881.9	chr6	31106206:31106236:31106432:31106556:31107417:31107814,	31106433	31106556	31106500	31106501	Frame_Shift_Ins	-	C	p.R37fs
COAD	TCGA-AA-3492-01	PSORS1C1	ENST00000547221.1,ENST00000259881.9	chr6	31106206:31106236:31106432:31106556:31107417:31107814,	31106433	31106556	31106501	31106501	Frame_Shift_Del	C	-	p.R37fs
COAD	TCGA-A6-5662-01	PTAR1	ENST00000340434.4,ENST00000474925.2	chr9	72356707:72356774:72365696:72365866:72374768:72374857,	72365697	72365866	72365713	72365713	Frame_Shift_Del	T	-	p.W81fs
COAD	TCGA-AZ-6598-01	PTCD2	ENST00000486995.1,ENST00000308077.5,ENST00000380639.5,ENST00000543322.1,ENST00000515198.1	chr5	71617998:71618091:71622438:71622568:71627084:71627202,	71622439	71622568	71622552	71622552	Frame_Shift_Del	A	-	p.A111fs
COAD	TCGA-F4-6570-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98231219:98231435:98232094:98232213:98238315:98238441,	98232095	98232213	98232166	98232166	Frame_Shift_Del	A	-	p.P442fs
COAD	TCGA-AZ-4615-01	PTCH1	ENST00000375274.2	chr9	98248105:98248156:98268688:98268881:98278750:98278940,98248105:98248156:98268688:98268881:98278904:98278940,	98268689	98268881	98268792	98268793	Frame_Shift_Ins	-	T	p.N31fs
COAD	TCGA-D5-6930-01	PTCH1	ENST00000375274.2	chr9	98248105:98248156:98268688:98268881:98278750:98278940,98248105:98248156:98268688:98268881:98278904:98278940,	98268689	98268881	98268792	98268793	Frame_Shift_Ins	-	T	p.N31fs
COAD	TCGA-AA-3663-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
COAD	TCGA-CK-5913-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
COAD	TCGA-CM-6162-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
COAD	TCGA-D5-6927-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
COAD	TCGA-G4-6309-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
COAD	TCGA-CM-4743-01	PTER	ENST00000423462.2	chr10	16479361:16479489:16526335:16526815:16528350:16528616,16478982:16479046:16526335:16526815:16528350:16528616,	16526336	16526815	16526700	16526701	Frame_Shift_Del	AC	-	p.106_106del
COAD	TCGA-A6-6653-01	PTGS1	ENST00000373698.5,ENST00000223423.4,ENST00000362012.2,ENST00000540753.1	chr9	125140711:125140852:125141053:125141197:125143649:125143831,	125141054	125141197	125141077	125141077	Frame_Shift_Del	C	-	p.S125fs
COAD	TCGA-AA-3663-01	PTK2B	ENST00000420218.2,ENST00000544172.1,ENST00000346049.5,ENST00000338238.4,ENST00000517339.1,ENST00000397501.1,ENST00000397497.4	chr8	27293259:27293310:27293767:27293865:27294638:27294723,	27293768	27293865	27293827	27293827	Frame_Shift_Del	T	-	p.G434fs
COAD	TCGA-CM-6171-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87688969:87689129:87690921:87691136:87691253:87691352,	87690922	87691136	87691032	87691032	Frame_Shift_Del	A	-	p.V1514fs
COAD	TCGA-AA-3713-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49196239:49196463:49197801:49197997:49199228:49199522,	49197802	49197997	49197838	49197838	Frame_Shift_Del	G	-	p.V375fs
COAD	TCGA-CM-6674-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49196239:49196463:49197801:49197997:49199228:49199522,	49197802	49197997	49197838	49197838	Frame_Shift_Del	G	-	p.V375fs
COAD	TCGA-DM-A28H-01	PTPRQ	ENST00000266688.5	chr12	80940334:80940476:80943243:80943513:80981907:80982231,	80943244	80943513	80943433	80943433	Frame_Shift_Del	A	-	p.Y1230fs
COAD	TCGA-AA-3713-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5240209:5240343:5243911:5244493:5245786:5246056,	5243912	5244493	5244243	5244243	Frame_Shift_Del	G	-	p.S414fs
COAD	TCGA-CK-5916-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5240209:5240343:5243911:5244493:5245786:5246056,	5243912	5244493	5244243	5244243	Frame_Shift_Del	G	-	p.S414fs
COAD	TCGA-AM-5820-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121568209:121568275:121608004:121608184:121612594:121612746,	121608005	121608184	121608017	121608017	Frame_Shift_Del	A	-	p.Q46fs
COAD	TCGA-CM-5861-01	PTTG1	ENST00000519287.1	chr5	159849213:159849243:159849346:159849410:159849715:159849900,	159849347	159849410	159849397	159849397	Frame_Shift_Del	G	-	p.L26fs
COAD	TCGA-G4-6628-01	PUM1	ENST00000257075.5,ENST00000373741.4,ENST00000498419.1,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3,ENST00000373742.2,ENST00000424085.2	chr1	31426560:31426828:31437520:31437757:31438828:31439044,	31437521	31437757	31437656	31437657	Frame_Shift_Del	TG	-	p.730_730del
COAD	TCGA-G4-6628-01	PUM1	ENST00000424085.2	chr1	31479840:31479949:31501642:31501711:31532050:31532424,31454184:31454252:31501642:31501711:31532050:31532424,	31501643	31501711	31501679	31501679	Frame_Shift_Del	A	-	p.Q133fs
COAD	TCGA-AD-6889-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111209	105111209	Frame_Shift_Del	T	-	p.R442fs
COAD	TCGA-AD-6889-01	PUS7	ENST00000481939.1	chr7	105108783:105108910:105111207:105111295:105112578:105112635,	105111208	105111295	105111209	105111209	Frame_Shift_Del	T	-	p.R442fs
COAD	TCGA-D5-6930-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111289	105111289	Frame_Shift_Del	T	-	p.K415fs
COAD	TCGA-D5-6930-01	PUS7	ENST00000481939.1	chr7	105108783:105108910:105111207:105111295:105112578:105112635,	105111208	105111295	105111289	105111289	Frame_Shift_Del	T	-	p.K415fs
COAD	TCGA-F4-6856-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1651971	1651971	Frame_Shift_Del	T	-	p.N1194fs
COAD	TCGA-AU-6004-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.N865fs
COAD	TCGA-AZ-6598-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.N865fs
COAD	TCGA-CM-5861-01	PYGB	ENST00000216962.4,ENST00000428458.1	chr20	25271116:25271258:25273041:25273249:25274793:25274928,	25273042	25273249	25273102	25273102	Frame_Shift_Del	C	-	p.T677fs
COAD	TCGA-AA-3663-01	PYHIN1	ENST00000392252.3,ENST00000368138.3,ENST00000368140.1,ENST00000392254.2	chr1	158908213:158908332:158908869:158909037:158911766:158912189,	158908870	158909037	158908874	158908875	Frame_Shift_Ins	-	A	p.R139fs
COAD	TCGA-A6-6780-01	R3HDM1	ENST00000409606.1,ENST00000264160.4	chr2	136362425:136362586:136373721:136373763:136374237:136374327,	136373722	136373763	136373736	136373737	Frame_Shift_Ins	-	T	p.S62fs
COAD	TCGA-CM-6674-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37728932	37728933	Frame_Shift_Ins	-	T	p.A1130fs
COAD	TCGA-AY-6197-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730180	37730181	Frame_Shift_Ins	-	T	p.Q714fs
COAD	TCGA-A6-6781-01	RAB22A	ENST00000244040.3	chr20	56928487:56928594:56929211:56929321:56934661:56942563,	56929212	56929321	56929281	56929281	Frame_Shift_Del	A	-	p.A149fs
COAD	TCGA-AA-3663-01	RAB3GAP2	ENST00000358951.2	chr1	220335539:220335610:220338074:220338141:220340634:220340741,	220338075	220338141	220338126	220338127	Frame_Shift_Ins	-	A	p.V1035fs
COAD	TCGA-AZ-4615-01	RAB3IL1	ENST00000394836.2	chr11	61672225:61672354:61673937:61674156:61674864:61674938,	61673938	61674156	61674069	61674069	Frame_Shift_Del	G	-	p.Q176fs
COAD	TCGA-G4-6628-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422304	229422305	Frame_Shift_Ins	-	A	p.E35fs
COAD	TCGA-A6-6653-01	RABAC1	ENST00000601891.1	chr19	42461185:42461271:42462437:42462535:42462887:42463066,42460932:42461086:42462437:42462535:42462887:42463066,	42462438	42462535	42462524	42462524	Frame_Shift_Del	G	-	p.P94fs
COAD	TCGA-AY-6197-01	RABGAP1L	ENST00000357444.6,ENST00000251507.4,ENST00000457696.1,ENST00000367689.3,ENST00000367690.1	chr1	174247750:174247917:174274123:174274265:174340116:174340210,	174274124	174274265	174274241	174274241	Frame_Shift_Del	C	-	p.S480fs
COAD	TCGA-A6-6781-01	RAC1	ENST00000348035.4,ENST00000497741.1,ENST00000488373.1	chr7	6431554:6431672:6439756:6439819:6441498:6441658,	6439757	6439819	6439775	6439775	Frame_Shift_Del	T	-	p.C81fs
COAD	TCGA-G4-6309-01	RAD17	ENST00000354868.5,ENST00000506564.1,ENST00000305138.4,ENST00000361732.2,ENST00000354312.3,ENST00000345306.6	chr5	68667983:68668044:68669656:68669914:68670454:68670538,	68669657	68669914	68669760	68669761	Frame_Shift_Ins	-	A	p.R38fs
COAD	TCGA-AZ-4615-01	RAD9B	ENST00000392672.4,ENST00000409778.3,ENST00000409461.1,ENST00000409300.1	chr12	110940132:110940188:110941610:110941681:110943421:110943577,	110941611	110941681	110941673	110941673	Frame_Shift_Del	A	-	p.S36fs
COAD	TCGA-A6-6652-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000395841.2,ENST00000371242.2	chr20	55943760:55943868:55948530:55948637:55948718:55948794,	55948531	55948637	55948626	55948626	Frame_Shift_Del	C	-	p.N246fs
COAD	TCGA-G4-6628-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696715	17696716	Frame_Shift_Ins	-	C	p.V151fs
COAD	TCGA-AZ-6598-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698237	17698237	Frame_Shift_Del	C	-	p.W658fs
COAD	TCGA-AD-6895-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698508	17698508	Frame_Shift_Del	A	-	p.E749fs
COAD	TCGA-CM-4743-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17700622	17700622	Frame_Shift_Del	G	-	p.A1453fs
COAD	TCGA-AZ-4615-01	RARA	ENST00000394089.2,ENST00000254066.5	chr17	38499047:38499119:38504567:38504716:38506035:38506070,38487108:38487648:38504567:38504716:38506035:38506070,	38504568	38504716	38504623	38504624	Frame_Shift_Ins	-	C	p.P78fs
COAD	TCGA-AZ-6598-01	RARG	ENST00000425354.2,ENST00000338561.5,ENST00000327550.3,ENST00000543726.1,ENST00000394426.1,ENST00000543762.1	chr12	53606868:53607027:53607279:53607484:53607842:53608019,	53607280	53607484	53607456	53607456	Frame_Shift_Del	G	-	p.P281fs
COAD	TCGA-CM-6171-01	RARRES2	ENST00000466675.1,ENST00000478771.1,ENST00000223271.3	chr7	150035446:150035528:150035703:150035830:150036074:150036168,	150035704	150035830	150035770	150035770	Frame_Shift_Del	G	-	p.H146fs
COAD	TCGA-DM-A28E-01	RARS	ENST00000231572.3,ENST00000521939.1,ENST00000519346.1	chr5	167919663:167919852:167920898:167921007:167921554:167921655,	167920899	167921007	167920951	167920954	Frame_Shift_Del	TTAC	-	p.141_142del
COAD	TCGA-AY-6197-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86676356:86676412:86679529:86679597:86681117:86681206,	86679530	86679597	86679537	86679538	Frame_Shift_Ins	-	T	p.V723fs
COAD	TCGA-AZ-4615-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433320:10433415:10433820:10433950:10434050:10434242,	10433821	10433950	10433828	10433828	Frame_Shift_Del	C	-	p.K375fs
COAD	TCGA-CM-5861-01	RBBP7	ENST00000425696.1,ENST00000380084.4,ENST00000404022.1,ENST00000330735.3,ENST00000380087.2	chrX	16863150:16863226:16863950:16864061:16867366:16867424,	16863951	16864061	16864001	16864001	Frame_Shift_Del	A	-	p.W431fs
COAD	TCGA-AA-3713-01	RBBP9	ENST00000491835.1,ENST00000337227.4	chr20	18470102:18470634:18471038:18471124:18474601:18474707,	18471039	18471124	18471060	18471060	Frame_Shift_Del	C	-	p.D105fs
COAD	TCGA-AD-6889-01	RBFOX2	ENST00000438146.2,ENST00000408983.2	chr22	36177646:36177790:36205826:36206051:36334894:36334945,36177646:36177793:36205826:36206051:36334894:36334945,	36205827	36206051	36205939	36205940	Frame_Shift_Del	GT	-	p.47_47del
COAD	TCGA-AZ-6599-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034427	47034427	Frame_Shift_Del	G	-	p.R94fs
COAD	TCGA-AA-3663-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647321	Frame_Shift_Del	AA	-	p.813_814del
COAD	TCGA-AZ-4615-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647321	Frame_Shift_Del	AA	-	p.813_814del
COAD	TCGA-CM-6674-01	RBM33	ENST00000392761.3,ENST00000401878.3	chr7	155530753:155531097:155532408:155532720:155534512:155534800,	155532409	155532720	155532537	155532538	Frame_Shift_Ins	-	C	p.P622fs
COAD	TCGA-A6-5661-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556608	155556609	Frame_Shift_Ins	-	G	p.R1028fs
COAD	TCGA-A6-5661-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556608	155556609	Frame_Shift_Ins	-	G	p.R1028fs
COAD	TCGA-A6-6780-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961586	135961589	Frame_Shift_Del	TGTT	-	.
COAD	TCGA-AD-5900-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961586	135961589	Frame_Shift_Del	TGTT	-	.
COAD	TCGA-AZ-4615-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961586	135961590	Frame_Shift_Del	TGTTT	-	.
COAD	TCGA-G4-6586-01	RC3H2	ENST00000471874.2,ENST00000335387.5,ENST00000373665.2,ENST00000423239.2,ENST00000357244.2,ENST00000498479.1	chr9	125652590:125652824:125655187:125655305:125659557:125659813,	125655188	125655305	125655207	125655207	Frame_Shift_Del	T	-	p.P111fs
COAD	TCGA-A6-6781-01	RCBTB2	ENST00000344532.3,ENST00000544904.1,ENST00000430805.2	chr13	49085905:49086013:49086151:49086310:49086864:49087031,	49086152	49086310	49086154	49086154	Frame_Shift_Del	C	-	p.E225fs
COAD	TCGA-AA-3663-01	RCC1	ENST00000373832.1	chr1	28844777:28844820:28856369:28856451:28858314:28858330,	28856370	28856451	28856410	28856410	Frame_Shift_Del	C	-	p.S11fs
COAD	TCGA-AA-3713-01	RCHY1	ENST00000514589.1,ENST00000513083.1,ENST00000505105.1,ENST00000451788.1,ENST00000513257.1,ENST00000504085.1	chr4	76434033:76434145:76434386:76434506:76439406:76439496,	76434387	76434506	76434395	76434395	Frame_Shift_Del	T	-	p.I68fs
COAD	TCGA-AU-6004-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654702	167654702	Frame_Shift_Del	C	-	p.L51fs
COAD	TCGA-CM-6674-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.F54fs
COAD	TCGA-CK-5916-01	RDX	ENST00000528498.1,ENST00000528556.1,ENST00000530749.1,ENST00000533991.1,ENST00000343115.4,ENST00000405097.1,ENST00000532118.1	chr11	110134769:110134959:110135503:110135599:110143260:110143344,	110135504	110135599	110135561	110135561	Frame_Shift_Del	A	-	p.G46fs
COAD	TCGA-AU-6004-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112461	36112461	Frame_Shift_Del	A	-	p.Q683fs
COAD	TCGA-D5-6930-01	RELT	ENST00000393580.2,ENST00000064780.2	chr11	73101799:73101966:73102188:73102268:73103255:73103513,	73102189	73102268	73102203	73102203	Frame_Shift_Del	G	-	p.W101fs
COAD	TCGA-G4-6320-01	RELT	ENST00000393580.2,ENST00000539134.1,ENST00000064780.2	chr11	73105521:73105779:73106131:73106330:73106488:73107685,	73106132	73106330	73106249	73106249	Frame_Shift_Del	C	-	p.L388fs
COAD	TCGA-F4-6461-01	REPS1	ENST00000367663.4,ENST00000445570.1,ENST00000450536.2,ENST00000415951.2	chr6	139236994:139237113:139238691:139238764:139241351:139241453,	139238692	139238764	139238736	139238737	Frame_Shift_Del	AA	-	p.492_493del
COAD	TCGA-F4-6461-01	REPS1	ENST00000258062.5,ENST00000529597.1	chr6	139236994:139237113:139238691:139238761:139241351:139241453,	139238692	139238761	139238736	139238737	Frame_Shift_Del	AA	-	p.492_493del
COAD	TCGA-F4-6461-01	REPS1	ENST00000483468.1	chr6	139236994:139237113:139238691:139238783:139241351:139241453,	139238692	139238783	139238736	139238737	Frame_Shift_Del	AA	-	p.492_493del
COAD	TCGA-G4-6320-01	RETSAT	ENST00000263854.6,ENST00000295802.4,ENST00000457495.2,ENST00000429806.1	chr2	85573097:85573217:85576506:85576704:85577162:85577364,	85576507	85576704	85576620	85576620	Frame_Shift_Del	C	-	p.G295fs
COAD	TCGA-G4-6588-01	REV3L	ENST00000470871.1,ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111708967:111709116:111709203:111709288:111710308:111710413,	111709204	111709288	111709251	111709251	Frame_Shift_Del	T	-	p.F301fs
COAD	TCGA-AZ-6598-01	RFC1	ENST00000381897.1,ENST00000418436.1,ENST00000349703.2	chr4	39322906:39322994:39324959:39325037:39328182:39328260,	39324960	39325037	39324960	39324961	Frame_Shift_Ins	-	T	p.K240fs
COAD	TCGA-CK-5916-01	RFC4	ENST00000447345.1,ENST00000392481.2,ENST00000418288.1	chr3	186518905:186518984:186522371:186522513:186524078:186524144,186518905:186518984:186522371:186522513:186524213:186524260,	186522372	186522513	186522407	186522408	Frame_Shift_Ins	-	T	p.N32fs
COAD	TCGA-AZ-4615-01	RFX2	ENST00000586806.1	chr19	6016100:6016282:6026173:6026248:6039990:6040252,6016100:6016282:6026173:6026248:6110403:6110457,	6026174	6026248	6026228	6026229	Frame_Shift_Ins	-	T	p.N181fs
COAD	TCGA-AA-3663-01	RFX2	ENST00000592546.1	chr19	6016100:6016282:6039990:6040252:6042054:6042134,	6039991	6040252	6040090	6040090	Frame_Shift_Del	C	-	p.S142fs
COAD	TCGA-AA-3492-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263964	33263965	Frame_Shift_Ins	-	C	p.G121fs
COAD	TCGA-D5-6928-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263964	33263965	Frame_Shift_Ins	-	C	p.G121fs
COAD	TCGA-F4-6570-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263964	33263965	Frame_Shift_Ins	-	C	p.G121fs
COAD	TCGA-G4-6628-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263964	33263965	Frame_Shift_Ins	-	C	p.G121fs
COAD	TCGA-A6-6653-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263965	33263965	Frame_Shift_Del	C	-	p.G121fs
COAD	TCGA-G4-6317-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263965	33263965	Frame_Shift_Del	C	-	p.G203fs
COAD	TCGA-AD-6889-01	RGL2	ENST00000497454.1	chr6	33264808:33264892:33266231:33266428:33266646:33266701,	33266232	33266428	33266342	33266343	Frame_Shift_Ins	-	G	p.G16fs
COAD	TCGA-A6-6781-01	RGL3	ENST00000563726.1,ENST00000380456.3,ENST00000589032.1,ENST00000562663.1,ENST00000393423.3	chr19	11512753:11512808:11512890:11512923:11513130:11513217,	11512891	11512923	11512920	11512920	Frame_Shift_Del	C	-	p.D445fs
COAD	TCGA-A6-6781-01	RGL3	ENST00000566153.1	chr19	11510881:11510973:11512686:11513217:11513325:11513382,	11512687	11513217	11512920	11512920	Frame_Shift_Del	C	-	p.D445fs
COAD	TCGA-G4-6628-01	RGP1	ENST00000378078.4,ENST00000496906.1,ENST00000456972.2	chr9	35749368:35749405:35749733:35749868:35750239:35750376,	35749734	35749868	35749781	35749781	Frame_Shift_Del	G	-	p.R10fs
COAD	TCGA-CM-5861-01	RGR	ENST00000359452.4	chr10	86007460:86007503:86008665:86008799:86012612:86012766,	86008666	86008799	86008694	86008695	Frame_Shift_Ins	-	C	p.S85fs
COAD	TCGA-CM-5861-01	RGR	ENST00000483660.1	chr10	86007460:86007503:86008677:86008799:86012612:86012766,86004818:86004925:86008677:86008799:86012612:86012766,	86008678	86008799	86008694	86008695	Frame_Shift_Ins	-	C	p.S85fs
COAD	TCGA-CM-5861-01	RGR	ENST00000483771.1	chr10	86004844:86004925:86007396:86008799:86012612:86012766,	86007397	86008799	86008694	86008695	Frame_Shift_Ins	-	C	p.S85fs
COAD	TCGA-CM-5861-01	RGR	ENST00000483744.1	chr10	86007460:86007503:86008620:86008799:86012612:86012766,	86008621	86008799	86008694	86008695	Frame_Shift_Ins	-	C	p.S85fs
COAD	TCGA-G4-6320-01	RGS2	ENST00000464302.1	chr1	192778272:192778311:192779295:192779561:192780110:192780162,	192779296	192779561	192779368	192779369	Frame_Shift_Ins	-	A	p.G61fs
COAD	TCGA-A6-5665-01	RGS2	ENST00000464302.1	chr1	192778272:192778311:192779295:192779561:192780110:192780162,	192779296	192779561	192779369	192779369	Frame_Shift_Del	A	-	p.G61fs
COAD	TCGA-CK-5916-01	RGS3	ENST00000478599.1,ENST00000462143.1,ENST00000343817.5,ENST00000374140.2,ENST00000350696.5	chr9	116299078:116299198:116345729:116346707:116353612:116353677,	116345730	116346707	116346238	116346238	Frame_Shift_Del	C	-	p.A170fs
COAD	TCGA-F4-6856-01	RGS3	ENST00000478599.1,ENST00000462143.1,ENST00000343817.5,ENST00000374140.2,ENST00000350696.5	chr9	116299078:116299198:116345729:116346707:116353612:116353677,	116345730	116346707	116346362	116346362	Frame_Shift_Del	G	-	p.E211fs
COAD	TCGA-CK-5913-01	RGS4	ENST00000421743.2,ENST00000533019.1,ENST00000367906.3,ENST00000527809.1,ENST00000367909.6,ENST00000528938.1	chr1	163042594:163042656:163043245:163043412:163044110:163046381,	163043246	163043412	163043368	163043368	Frame_Shift_Del	A	-	p.A93fs
COAD	TCGA-A6-5661-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351924	156351924	Frame_Shift_Del	G	-	p.P318fs
COAD	TCGA-AD-6965-01	RHOA	ENST00000418115.1,ENST00000445425.1,ENST00000422781.1	chr3	49399949:49400059:49405860:49405981:49412866:49413024,	49405861	49405981	49405862	49405863	Frame_Shift_Del	TA	-	p.92_93del
COAD	TCGA-A6-5665-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152276738:152276893:152279463:152279556:152285297:152285436,	152279464	152279556	152279499	152279500	Frame_Shift_Ins	-	A	p.S243fs
COAD	TCGA-CM-4746-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19955586	19955586	Frame_Shift_Del	C	-	p.S306fs
COAD	TCGA-A6-6780-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956393	19956394	Frame_Shift_Ins	-	CC	p.D575fs
COAD	TCGA-CM-6171-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956393	19956394	Frame_Shift_Ins	-	C	p.D575fs
COAD	TCGA-CM-4743-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956394	19956394	Frame_Shift_Del	C	-	p.D575fs
COAD	TCGA-D5-6930-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956394	19956394	Frame_Shift_Del	C	-	p.D575fs
COAD	TCGA-G4-6586-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000556418.1,ENST00000216487.7	chr14	93125729:93125814:93142819:93142951:93151331:93151495,	93142820	93142951	93142852	93142852	Frame_Shift_Del	G	-	p.P789fs
COAD	TCGA-CM-4743-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178990	33178990	Frame_Shift_Del	G	-	p.S170fs
COAD	TCGA-CM-6171-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178990	33178990	Frame_Shift_Del	G	-	p.S170fs
COAD	TCGA-D5-6930-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33179125	33179125	Frame_Shift_Del	G	-	p.T215fs
COAD	TCGA-AA-3713-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33179214	33179214	Frame_Shift_Del	C	-	p.G245fs
COAD	TCGA-CM-6171-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33179214	33179214	Frame_Shift_Del	C	-	p.G245fs
COAD	TCGA-CM-5861-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323704	59323705	Frame_Shift_Del	AA	-	p.228_228del
COAD	TCGA-A6-6780-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
COAD	TCGA-A6-6780-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
COAD	TCGA-A6-6781-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
COAD	TCGA-A6-6781-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
COAD	TCGA-G4-6304-01	RNF13	ENST00000474348.1,ENST00000361785.6,ENST00000482083.3,ENST00000467977.1,ENST00000491086.1	chr3	149613259:149613347:149619858:149619949:149629764:149629870,149613259:149613357:149619858:149619949:149629764:149629870,	149619859	149619949	149619943	149619943	Frame_Shift_Del	A	-	p.E165fs
COAD	TCGA-AD-6964-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000520548.1,ENST00000424310.2	chr5	158608967:158609059:158621723:158621832:158630441:158630664,	158621724	158621832	158621762	158621763	Frame_Shift_Ins	-	A	p.L113fs
COAD	TCGA-AY-6197-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630630	158630630	Frame_Shift_Del	T	-	p.N27fs
COAD	TCGA-AA-3663-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630630	158630631	Frame_Shift_Del	TT	-	p.27_27del
COAD	TCGA-G4-6309-01	RNF207	ENST00000492476.1,ENST00000377939.4	chr1	6271094:6271178:6271926:6272113:6272290:6272476,	6271927	6272113	6271964	6271964	Frame_Shift_Del	C	-	p.G382fs
COAD	TCGA-CM-4743-01	RNF212	ENST00000433731.2,ENST00000506730.1,ENST00000382968.5	chr4	1067386:1067450:1073430:1073476:1075354:1075391,1067386:1067450:1073430:1073476:1075206:1075255,	1073431	1073476	1073448	1073449	Frame_Shift_Del	GA	-	p.165_165del
COAD	TCGA-D5-6930-01	RNF213	ENST00000319921.4,ENST00000508628.2,ENST00000559070.1,ENST00000582970.1,ENST00000456466.1	chr17	78272120:78272318:78280051:78280268:78280927:78281001,	78280052	78280268	78280073	78280074	Frame_Shift_Del	GA	-	p.744_744del
COAD	TCGA-CM-4743-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5760663:5760803:5764954:5765069:5769062:5769227,	5764955	5765069	5765012	5765012	Frame_Shift_Del	T	-	p.R483fs
COAD	TCGA-G4-6628-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529514	219529514	Frame_Shift_Del	C	-	p.G250fs
COAD	TCGA-CK-5916-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448292	56448293	Frame_Shift_Ins	-	G	p.C119fs
COAD	TCGA-AD-6889-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448297	56448297	Frame_Shift_Del	C	-	p.R117fs
COAD	TCGA-CK-5913-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448297	56448298	Frame_Shift_Ins	-	G	p.R117fs
COAD	TCGA-AD-6895-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448298	Frame_Shift_Del	G	-	p.R117fs
COAD	TCGA-CM-6674-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448298	Frame_Shift_Del	G	-	p.R117fs
COAD	TCGA-F4-6856-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448298	Frame_Shift_Del	G	-	p.R117fs
COAD	TCGA-G4-6586-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448298	Frame_Shift_Del	G	-	p.R117fs
COAD	TCGA-AD-5900-01	RNF44	ENST00000274811.4,ENST00000537487.1,ENST00000513029.1	chr5	175957582:175957744:175957848:175958022:175958463:175958558,	175957849	175958022	175957911	175957911	Frame_Shift_Del	G	-	p.Q193fs
COAD	TCGA-AA-3663-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.T1288fs
COAD	TCGA-G4-6628-01	ROCK1	ENST00000399799.2,ENST00000583556.1	chr18	18550308:18550474:18559870:18559965:18562723:18562744,	18559871	18559965	18559913	18559913	Frame_Shift_Del	T	-	p.N871fs
COAD	TCGA-CM-5861-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629104	18629105	Frame_Shift_Ins	-	A	p.F121fs
COAD	TCGA-G4-6588-01	ROCK2	ENST00000401753.1,ENST00000315872.6	chr2	11348412:11348573:11351806:11351966:11354482:11354589,	11351807	11351966	11351960	11351960	Frame_Shift_Del	T	-	p.S684fs
COAD	TCGA-AA-3492-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41814295:41814448:41814962:41815158:41815442:41815552,	41814963	41815158	41815100	41815101	Frame_Shift_Ins	-	G	p.S869fs
COAD	TCGA-CM-6171-01	RPAP2	ENST00000610020.1,ENST00000484158.1	chr1	92769840:92769906:92772744:92772833:92786155:92786191,	92772745	92772833	92772747	92772747	Frame_Shift_Del	T	-	p.S134fs
COAD	TCGA-D5-6540-01	RPAP2	ENST00000477322.1,ENST00000610020.1	chr1	92811402:92811471:92846280:92846430:92852567:92852790,	92846281	92846430	92846371	92846371	Frame_Shift_Del	A	-	p.L593fs
COAD	TCGA-AZ-6598-01	RPE	ENST00000438191.1,ENST00000453724.1	chr2	210867380:210867507:210874380:210874460:210880696:210880836,210868161:210868192:210874380:210874460:210880696:210880836,	210874381	210874460	210874452	210874455	Frame_Shift_Del	CTTT	-	p.65_66del
COAD	TCGA-AZ-6598-01	RPE	ENST00000408981.2	chr2	210867380:210867507:210874362:210874460:210880696:210880836,	210874363	210874460	210874452	210874455	Frame_Shift_Del	CTTT	-	p.65_66del
COAD	TCGA-CM-4743-01	RPL12	ENST00000361436.5,ENST00000497825.1	chr9	130211567:130211641:130211888:130211987:130213009:130213083,	130211889	130211987	130211976	130211976	Frame_Shift_Del	T	-	p.V42fs
COAD	TCGA-CM-5861-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257784	6257785	Frame_Shift_Ins	-	T	p.K15fs
COAD	TCGA-CM-6165-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257784	6257785	Frame_Shift_Ins	-	T	p.K15fs
COAD	TCGA-A6-6780-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
COAD	TCGA-CM-6171-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
COAD	TCGA-D5-6930-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
COAD	TCGA-G4-6309-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
COAD	TCGA-G4-6320-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
COAD	TCGA-F4-6570-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403062	83403063	Frame_Shift_Ins	-	T	p.A110fs
COAD	TCGA-CM-4743-01	RRAGC	ENST00000373001.3	chr1	39318045:39318160:39321379:39321579:39322550:39322754,	39321380	39321579	39321456	39321456	Frame_Shift_Del	T	-	p.I189fs
COAD	TCGA-A6-5665-01	RRNAD1	ENST00000368218.4,ENST00000476229.1	chr1	156703168:156703312:156705516:156705701:156706423:156706741,	156705517	156705701	156705553	156705554	Frame_Shift_Ins	-	C	p.S225fs
COAD	TCGA-G4-6628-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412284	77412285	Frame_Shift_Ins	-	T	p.V664fs
COAD	TCGA-AD-5900-01	RSPH1	ENST00000291536.3	chr21	43912867:43912973:43913075:43913189:43916242:43916296,	43913076	43913189	43913176	43913176	Frame_Shift_Del	C	-	p.G23fs
COAD	TCGA-CM-4746-01	RSU1	ENST00000345264.5,ENST00000377921.3,ENST00000602389.1,ENST00000377911.1	chr10	16796869:16796988:16806388:16806509:16824032:16824083,	16806389	16806509	16806457	16806457	Frame_Shift_Del	A	-	p.N19fs
COAD	TCGA-G4-6309-01	RTCA	ENST00000370128.4,ENST00000260563.4	chr1	100738949:100739008:100740379:100740521:100741154:100741279,	100740380	100740521	100740396	100740396	Frame_Shift_Del	G	-	p.K176fs
COAD	TCGA-CM-6171-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253227	55253228	Frame_Shift_Ins	-	T	p.V670fs
COAD	TCGA-CM-4746-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253228	55253228	Frame_Shift_Del	T	-	p.V464fs
COAD	TCGA-A6-6651-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253746	55253746	Frame_Shift_Del	T	-	p.I497fs
COAD	TCGA-F4-6808-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253746	55253746	Frame_Shift_Del	T	-	p.I497fs
COAD	TCGA-AD-5900-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55254374	55254377	Frame_Shift_Del	TCTA	-	p.287_288del
COAD	TCGA-G4-6628-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156582	70156583	Frame_Shift_Ins	-	T	p.M153fs
COAD	TCGA-AD-5900-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390355	45390355	Frame_Shift_Del	C	-	p.S28fs
COAD	TCGA-AU-6004-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390355	45390355	Frame_Shift_Del	C	-	p.S28fs
COAD	TCGA-CK-5916-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390355	45390355	Frame_Shift_Del	C	-	p.S28fs
COAD	TCGA-F4-6570-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390355	45390355	Frame_Shift_Del	C	-	p.S28fs
COAD	TCGA-D5-6928-01	RXRA	ENST00000481739.1	chr9	137218425:137218505:137293477:137293728:137299994:137300145,	137293478	137293728	137293658	137293658	Frame_Shift_Del	C	-	p.S70fs
COAD	TCGA-CM-6162-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590306	5590306	Frame_Shift_Del	C	-	p.L837fs
COAD	TCGA-A6-6781-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590343	5590343	Frame_Shift_Del	C	-	p.G824fs
COAD	TCGA-D5-6928-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590343	5590343	Frame_Shift_Del	C	-	p.G824fs
COAD	TCGA-A6-6781-01	SAFB	ENST00000292123.5	chr19	5667056:5667175:5667363:5667461:5667830:5667897,	5667364	5667461	5667372	5667372	Frame_Shift_Del	G	-	p.W821fs
COAD	TCGA-A6-6781-01	SAFB	ENST00000454510.1,ENST00000589863.1,ENST00000538656.1,ENST00000588852.1,ENST00000592224.1,ENST00000433404.1	chr19	5667056:5667175:5667357:5667461:5667830:5667897,	5667358	5667461	5667372	5667372	Frame_Shift_Del	G	-	p.W821fs
COAD	TCGA-AD-6889-01	SAG	ENST00000471884.1,ENST00000453143.1,ENST00000409110.1,ENST00000462487.1,ENST00000447536.1	chr2	234227396:234227441:234229275:234229469:234231591:234231615,	234229276	234229469	234229431	234229431	Frame_Shift_Del	A	-	p.L112fs
COAD	TCGA-AD-6889-01	SAG	ENST00000474206.1	chr2	234227396:234227441:234229348:234229469:234231591:234231615,	234229349	234229469	234229431	234229431	Frame_Shift_Del	A	-	p.L112fs
COAD	TCGA-AD-6889-01	SAMD3	ENST00000368134.2,ENST00000457563.2,ENST00000439090.2,ENST00000437477.2	chr6	130466484:130466567:130467154:130467326:130475969:130475998,	130467155	130467326	130467265	130467265	Frame_Shift_Del	A	-	p.L362fs
COAD	TCGA-D5-5541-01	SAMD4B	ENST00000598913.1,ENST00000314471.6	chr19	39867076:39867186:39867344:39867431:39868124:39868464,	39867345	39867431	39867360	39867361	Frame_Shift_Ins	-	C	p.A345fs
COAD	TCGA-F4-6570-01	SAP18	ENST00000607003.1,ENST00000450573.1,ENST00000382533.4	chr13	21715024:21715134:21720943:21721066:21721324:21721458,	21720944	21721066	21721035	21721036	Frame_Shift_Ins	-	T	p.V111fs
COAD	TCGA-AZ-6598-01	SASH1	ENST00000367467.3	chr6	148808749:148808851:148835459:148835592:148840682:148841029,	148835460	148835592	148835574	148835574	Frame_Shift_Del	A	-	p.M281fs
COAD	TCGA-AZ-6598-01	SASH3	ENST00000356892.3	chrX	128924915:128925057:128926303:128926452:128926602:128926812,	128926304	128926452	128926360	128926361	Frame_Shift_Ins	-	C	p.A167fs
COAD	TCGA-CM-5861-01	SASH3	ENST00000356892.3	chrX	128924915:128925057:128926303:128926452:128926602:128926812,	128926304	128926452	128926360	128926361	Frame_Shift_Ins	-	C	p.A167fs
COAD	TCGA-A6-6653-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320482	46320482	Frame_Shift_Del	T	-	p.N1001fs
COAD	TCGA-AZ-4615-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321680	46321680	Frame_Shift_Del	T	-	p.T602fs
COAD	TCGA-G4-6309-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321724	46321725	Frame_Shift_Del	CT	-	p.587_587del
COAD	TCGA-AA-3713-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158042	Frame_Shift_Del	C	-	p.T1178fs
COAD	TCGA-G4-6586-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158042	Frame_Shift_Del	C	-	p.T1178fs
COAD	TCGA-G4-6588-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158042	Frame_Shift_Del	C	-	p.T1178fs
COAD	TCGA-AD-6964-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073336	33073336	Frame_Shift_Del	G	-	p.P235fs
COAD	TCGA-AZ-6598-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073336	33073336	Frame_Shift_Del	G	-	p.P235fs
COAD	TCGA-D5-6927-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073336	33073336	Frame_Shift_Del	G	-	p.P235fs
COAD	TCGA-D5-6540-01	SCFD1	ENST00000557713.1,ENST00000557076.1	chr14	31091534:31091605:31097414:31097485:31103152:31103243,31091534:31091605:31097414:31097485:31099682:31099771,31091537:31091668:31097414:31097485:31099682:31099771,	31097415	31097485	31097455	31097456	Frame_Shift_Ins	-	A	p.I34fs
COAD	TCGA-DM-A28F-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864162	129864163	Frame_Shift_Ins	-	T	p.A541fs
COAD	TCGA-AY-6197-01	SCNN1D	ENST00000400928.3,ENST00000379101.4,ENST00000338555.2	chr1	1217655:1217695:1219357:1219470:1221305:1221548,	1219358	1219470	1219450	1219451	Frame_Shift_Ins	-	G	p.H148fs
COAD	TCGA-AD-6889-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144886215:144886326:144886737:144886995:144887103:144887184,	144886738	144886995	144886852	144886852	Frame_Shift_Del	G	-	p.T966fs
COAD	TCGA-AM-5820-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144886215:144886326:144886737:144886995:144887103:144887184,	144886738	144886995	144886852	144886852	Frame_Shift_Del	G	-	p.T966fs
COAD	TCGA-D5-6540-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144886215:144886326:144886737:144886995:144887103:144887184,	144886738	144886995	144886852	144886852	Frame_Shift_Del	G	-	p.T966fs
COAD	TCGA-A6-5665-01	SCYL1	ENST00000279270.6,ENST00000524944.1,ENST00000533862.1,ENST00000270176.5,ENST00000420247.2,ENST00000525364.1,ENST00000527009.1	chr11	65293395:65293514:65293594:65293821:65294253:65294344,	65293595	65293821	65293691	65293691	Frame_Shift_Del	G	-	p.L157fs
COAD	TCGA-G4-6588-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189591	75189591	Frame_Shift_Del	A	-	p.E111fs
COAD	TCGA-G4-6320-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189626	75189626	Frame_Shift_Del	A	-	p.I122fs
COAD	TCGA-A6-6653-01	SEC24A	ENST00000398844.2,ENST00000322887.4	chr5	133996808:133997276:134002512:134002686:134007498:134007576,	134002513	134002686	134002623	134002623	Frame_Shift_Del	C	-	p.T225fs
COAD	TCGA-G4-6586-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525559	75525560	Frame_Shift_Ins	-	C	p.V456fs
COAD	TCGA-AA-3663-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214765	108214765	Frame_Shift_Del	A	-	p.L532fs
COAD	TCGA-F4-6856-01	SELE	ENST00000333360.7	chr1	169696879:169697068:169697198:169697387:169698326:169698515,	169697199	169697387	169697236	169697236	Frame_Shift_Del	G	-	p.T415fs
COAD	TCGA-G4-6628-01	SEMA4F	ENST00000357877.2,ENST00000420077.1,ENST00000446927.1,ENST00000339773.5	chr2	74902049:74902162:74902288:74902511:74902651:74902761,	74902289	74902511	74902328	74902329	Frame_Shift_Del	TC	-	p.396_397del
COAD	TCGA-CK-5916-01	SENP2	ENST00000413407.1,ENST00000459883.1,ENST00000473760.1,ENST00000545472.1,ENST00000427465.2,ENST00000296257.5	chr3	185327034:185327138:185329438:185329533:185330394:185330446,	185329439	185329533	185329480	185329480	Frame_Shift_Del	G	-	p.W255fs
COAD	TCGA-A6-5665-01	SENP3	ENST00000580042.1,ENST00000578868.1	chr17	7469033:7469081:7470243:7470322:7473673:7473811,	7470244	7470322	7470305	7470305	Frame_Shift_Del	A	-	p.V441fs
COAD	TCGA-A6-5665-01	SENP6	ENST00000370010.2,ENST00000541192.1,ENST00000370014.3,ENST00000503501.1,ENST00000447266.2	chr6	76423228:76423297:76423390:76423541:76425100:76425593,	76423391	76423541	76423416	76423416	Frame_Shift_Del	A	-	p.V1001fs
COAD	TCGA-AZ-6598-01	SENP6	ENST00000370010.2,ENST00000541192.1,ENST00000370014.3,ENST00000503501.1,ENST00000447266.2	chr6	76423228:76423297:76423390:76423541:76425100:76425593,	76423391	76423541	76423416	76423416	Frame_Shift_Del	A	-	p.V1001fs
COAD	TCGA-F4-6856-01	SERHL2	ENST00000477564.1,ENST00000416156.2	chr22	42954353:42954463:42956191:42956271:42967126:42967209,	42956192	42956271	42956245	42956246	Frame_Shift_Del	AA	-	p.196_196del
COAD	TCGA-CM-4746-01	SERPINB5	ENST00000465652.1,ENST00000382771.4,ENST00000464346.1	chr18	61160185:61160328:61166352:61166520:61170562:61170608,	61166353	61166520	61166450	61166450	Frame_Shift_Del	A	-	p.Q222fs
COAD	TCGA-F4-6460-01	SERPINB7	ENST00000425392.1,ENST00000336429.2,ENST00000431370.1,ENST00000398019.2,ENST00000447428.1,ENST00000546027.1	chr18	61449588:61449774:61460394:61460511:61463499:61463546,61459626:61459677:61460394:61460511:61463499:61463546,	61460395	61460511	61460422	61460423	Frame_Shift_Ins	-	T	p.V83fs
COAD	TCGA-G4-6628-01	SERPINB7	ENST00000425392.1,ENST00000336429.2,ENST00000431370.1,ENST00000398019.2,ENST00000447428.1,ENST00000546027.1	chr18	61449588:61449774:61460394:61460511:61463499:61463546,61459626:61459677:61460394:61460511:61463499:61463546,	61460395	61460511	61460422	61460423	Frame_Shift_Ins	-	T	p.V83fs
COAD	TCGA-A6-5665-01	SERPING1	ENST00000531797.1	chr11	57373880:57374020:57379189:57379409:57381800:57382002,57369517:57369642:57379189:57379409:57381800:57382002,	57379190	57379409	57379354	57379355	Frame_Shift_Ins	-	C	p.L398fs
COAD	TCGA-A6-5665-01	SERPING1	ENST00000340687.6	chr11	57373880:57374020:57379300:57379409:57381800:57382002,	57379301	57379409	57379354	57379355	Frame_Shift_Ins	-	C	p.L398fs
COAD	TCGA-A6-5661-01	SETD1A	ENST00000262519.8,ENST00000452917.1	chr16	30972587:30972858:30974753:30974875:30975414:30975516,	30974754	30974875	30974812	30974813	Frame_Shift_Del	TG	-	p.192_192del
COAD	TCGA-AZ-4615-01	SETD1B	ENST00000267197.5,ENST00000542440.1,ENST00000604567.1	chr12	122255704:122255810:122257309:122257801:122260395:122261655,	122257310	122257801	122257648	122257648	Frame_Shift_Del	C	-	p.E1209fs
COAD	TCGA-AD-6889-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125832	47125832	Frame_Shift_Del	T	-	p.N1813fs
COAD	TCGA-CM-5861-01	SETMAR	ENST00000425863.1	chr3	4345054:4345210:4354581:4354913:4355350:4355445,4345054:4345210:4354581:4354913:4355330:4355445,	4354582	4354913	4354769	4354769	Frame_Shift_Del	T	-	p.V115fs
COAD	TCGA-F4-6854-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2,ENST00000436441.1	chr9	135163936:135164038:135171258:135171415:135172273:135172441,	135171259	135171415	135171306	135171307	Frame_Shift_Ins	-	T	p.I2020fs
COAD	TCGA-AZ-6598-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135201742	135201742	Frame_Shift_Del	A	-	p.F1748fs
COAD	TCGA-AA-3663-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203230	135203230	Frame_Shift_Del	C	-	p.G1252fs
COAD	TCGA-CM-4743-01	SF1	ENST00000486960.1,ENST00000334944.5,ENST00000227503.9,ENST00000448404.1,ENST00000422298.2,ENST00000433274.2,ENST00000377387.1,ENST00000377394.3,ENST00000377390.3	chr11	64536749:64536810:64536897:64537081:64537435:64537525,	64536898	64537081	64537024	64537024	Frame_Shift_Del	C	-	p.K305fs
COAD	TCGA-AZ-6598-01	SFSWAP	ENST00000538548.1,ENST00000261674.4	chr12	132250662:132250853:132262609:132262875:132271007:132271133,	132262610	132262875	132262742	132262742	Frame_Shift_Del	A	-	p.K758fs
COAD	TCGA-G4-6628-01	SFTA3	ENST00000418548.3	chr14	36943953:36944078:36960405:36960496:36982316:36982375,36946223:36946308:36960405:36960496:36982316:36982375,	36960406	36960496	36960487	36960488	Frame_Shift_Ins	-	A	p.L18fs
COAD	TCGA-CM-4746-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67148011	67148011	Frame_Shift_Del	C	-	p.S425fs
COAD	TCGA-AU-6004-01	SH2D4B	ENST00000313455.4	chr10	82348385:82348533:82363334:82363551:82369179:82369307,	82363335	82363551	82363348	82363348	Frame_Shift_Del	G	-	p.K219fs
COAD	TCGA-D5-6928-01	SH3BP1	ENST00000417536.1	chr22	38049790:38049880:38051278:38051322:38051932:38052048,	38051279	38051322	38051313	38051314	Frame_Shift_Ins	-	C	p.P576fs
COAD	TCGA-D5-6540-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831342	2831342	Frame_Shift_Del	C	-	p.P236fs
COAD	TCGA-D5-6927-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831651	2831652	Frame_Shift_Ins	-	C	p.S340fs
COAD	TCGA-AZ-6598-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831768	2831768	Frame_Shift_Del	C	-	p.V378fs
COAD	TCGA-AD-6889-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L336fs
COAD	TCGA-AZ-4615-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229685	8229685	Frame_Shift_Del	C	-	p.A755fs
COAD	TCGA-CM-4746-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229685	8229685	Frame_Shift_Del	C	-	p.A755fs
COAD	TCGA-F4-6570-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229685	8229685	Frame_Shift_Del	C	-	p.A755fs
COAD	TCGA-A6-5665-01	SHBG	ENST00000574539.1,ENST00000576830.1,ENST00000416273.3,ENST00000575314.1,ENST00000441599.2,ENST00000380450.4,ENST00000570527.1,ENST00000570547.1,ENST00000340624.5	chr17	7533997:7534187:7534517:7534679:7534906:7535066,	7534518	7534679	7534640	7534641	Frame_Shift_Ins	-	G	p.L172fs
COAD	TCGA-CM-4746-01	SHC1	ENST00000368445.5,ENST00000368453.4,ENST00000448116.2,ENST00000414115.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938637:154938707:154938794:154938993:154940146:154940273,	154938795	154938993	154938889	154938890	Frame_Shift_Ins	-	C	p.V253fs
COAD	TCGA-A6-6780-01	SHC1	ENST00000368445.5,ENST00000368453.4,ENST00000448116.2,ENST00000414115.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938637:154938707:154938794:154938993:154940146:154940273,	154938795	154938993	154938890	154938890	Frame_Shift_Del	C	-	p.V208fs
COAD	TCGA-AY-6197-01	SHF	ENST00000290894.8	chr15	45470362:45470504:45490969:45491318:45492924:45493069,	45490970	45491318	45490988	45490989	Frame_Shift_Ins	-	T	p.D95fs
COAD	TCGA-AM-5820-01	SHF	ENST00000290894.8	chr15	45470362:45470504:45490969:45491318:45492924:45493069,	45490970	45491318	45491192	45491192	Frame_Shift_Del	C	-	p.H28fs
COAD	TCGA-A6-6781-01	SHKBP1	ENST00000595726.1	chr19	41092801:41092850:41096635:41096759:41096881:41096993,41095006:41095084:41096635:41096759:41096881:41096993,	41096636	41096759	41096736	41096737	Frame_Shift_Ins	-	A	p.P623fs
COAD	TCGA-A6-6781-01	SHKBP1	ENST00000596163.1,ENST00000594862.1	chr19	41095006:41095084:41096638:41096759:41096881:41096993,	41096639	41096759	41096736	41096737	Frame_Shift_Ins	-	A	p.P623fs
COAD	TCGA-CA-6716-01	SHROOM3	ENST00000296043.6	chr4	77675463:77676345:77677601:77678090:77680697:77680848,	77677602	77678090	77677696	77677697	Frame_Shift_Ins	-	A	p.Q1602fs
COAD	TCGA-AZ-6601-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3670246:3670349:3670608:3670911:3671986:3672247,	3670609	3670911	3670744	3670745	Frame_Shift_Del	TG	-	p.1587_1587del
COAD	TCGA-A6-6781-01	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000394227.3,ENST00000527525.1	chr11	65414854:65415129:65416732:65416951:65417031:65417143,	65416733	65416951	65416780	65416780	Frame_Shift_Del	G	-	p.R785fs
COAD	TCGA-AA-3492-01	SIPA1L2	ENST00000262861.4,ENST00000366630.1	chr1	232607116:232607274:232615372:232615476:232619537:232619712,	232615373	232615476	232615450	232615451	Frame_Shift_Del	AG	-	p.670_670del
COAD	TCGA-D5-6531-01	SIPA1L3	ENST00000222345.6	chr19	38519728:38519796:38571895:38573739:38579360:38579491,	38571896	38573739	38572758	38572767	Frame_Shift_Del	GGGGAGCCGC	-	p.184_187del
COAD	TCGA-F4-6856-01	SIRPG	ENST00000381580.1,ENST00000303415.3	chr20	1610869:1610952:1616833:1617151:1629697:1630051,1615912:1616245:1616833:1617151:1629697:1630054,	1616834	1617151	1617135	1617135	Frame_Shift_Del	G	-	p.V150fs
COAD	TCGA-AZ-6601-01	SIRT4	ENST00000202967.4	chr12	120741682:120741861:120750258:120750553:120750686:120751044,	120750259	120750553	120750294	120750294	Frame_Shift_Del	G	-	p.R178fs
COAD	TCGA-CM-4743-01	SLAIN1	ENST00000358679.3,ENST00000351546.3,ENST00000474663.1,ENST00000488699.1,ENST00000466548.1,ENST00000441784.1,ENST00000442759.1,ENST00000418532.1,ENST00000267219.8	chr13	78318417:78318567:78320648:78320990:78327337:78327376,	78320649	78320990	78320721	78320722	Frame_Shift_Ins	-	A	p.G330fs
COAD	TCGA-CM-5348-01	SLAMF7	ENST00000359331.4	chr1	160719827:160719883:160720093:160720213:160721134:160721238,160719827:160719883:160720093:160720213:160721975:160722036,	160720094	160720213	160720161	160720162	Frame_Shift_Del	TC	-	p.239_239del
COAD	TCGA-AZ-6601-01	SLC12A6	ENST00000458406.2,ENST00000559664.1,ENST00000397707.2,ENST00000397702.2,ENST00000290209.5,ENST00000561080.1,ENST00000560332.1,ENST00000560611.1,ENST00000558589.1,ENST00000558667.1,ENST00000354181.3,ENST00000559523.1	chr15	34548436:34548484:34549842:34549989:34551013:34551145,	34549843	34549989	34549916	34549916	Frame_Shift_Del	A	-	p.L155fs
COAD	TCGA-G4-6309-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459489	100459490	Frame_Shift_Ins	-	G	p.K556fs
COAD	TCGA-AA-3492-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459490	100459490	Frame_Shift_Del	G	-	p.K556fs
COAD	TCGA-G4-6628-01	SLC16A10	ENST00000368851.5	chr6	111493897:111494042:111498414:111498868:111527794:111527938,	111498415	111498868	111498763	111498763	Frame_Shift_Del	A	-	p.P279fs
COAD	TCGA-AA-3492-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945482	6945482	Frame_Shift_Del	C	-	p.G340fs
COAD	TCGA-AY-6197-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945830	6945830	Frame_Shift_Del	G	-	p.P224fs
COAD	TCGA-AD-6895-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203598	91203598	Frame_Shift_Del	A	-	p.V74fs
COAD	TCGA-D5-6930-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203598	91203598	Frame_Shift_Del	A	-	p.V74fs
COAD	TCGA-A6-5665-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113460203	113460203	Frame_Shift_Del	A	-	p.G276fs
COAD	TCGA-CM-4743-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270150	66270150	Frame_Shift_Del	C	-	p.L99fs
COAD	TCGA-CM-5861-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270150	66270150	Frame_Shift_Del	C	-	p.L99fs
COAD	TCGA-F4-6856-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61414180	61414180	Frame_Shift_Del	T	-	p.I202fs
COAD	TCGA-D5-6930-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351590	74351590	Frame_Shift_Del	A	-	p.Y117fs
COAD	TCGA-CA-6719-01	SLC19A3	ENST00000409456.2	chr2	228564268:228564280:228566884:228567407:228582658:228582715,	228566885	228567407	228566960	228566961	Frame_Shift_Ins	-	A	p.F25fs
COAD	TCGA-CA-6719-01	SLC19A3	ENST00000258403.3,ENST00000409287.1	chr2	228564268:228564280:228566884:228567036:228582658:228582715,	228566885	228567036	228566960	228566961	Frame_Shift_Ins	-	A	p.F25fs
COAD	TCGA-AA-3713-01	SLC1A1	ENST00000262352.3	chr9	4576568:4576763:4583037:4583172:4585311:4585557,	4583038	4583172	4583078	4583078	Frame_Shift_Del	C	-	p.V411fs
COAD	TCGA-CM-6171-01	SLC20A2	ENST00000518660.1,ENST00000520179.1,ENST00000522401.1,ENST00000342228.3,ENST00000520262.1	chr8	42296984:42297171:42302163:42302280:42317413:42317510,	42302164	42302280	42302207	42302207	Frame_Shift_Del	A	-	p.V230fs
COAD	TCGA-AZ-6598-01	SLC22A2	ENST00000366953.3,ENST00000486916.1,ENST00000491092.1	chr6	160662505:160662618:160663325:160663434:160664603:160664818,	160663326	160663434	160663417	160663417	Frame_Shift_Del	T	-	p.I433fs
COAD	TCGA-CM-4743-01	SLC22A4	ENST00000200652.3	chr5	131649306:131649461:131657876:131658048:131662969:131663078,	131657877	131658048	131657935	131657936	Frame_Shift_Ins	-	T	p.T237fs
COAD	TCGA-CM-5861-01	SLC22A5	ENST00000448810.1,ENST00000437841.2,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1	chr5	131721067:131721191:131722716:131722843:131724612:131724697,	131722717	131722843	131722731	131722731	Frame_Shift_Del	C	-	p.S280fs
COAD	TCGA-G4-6586-01	SLC22A6	ENST00000377871.3,ENST00000360421.4,ENST00000421062.2,ENST00000537349.1,ENST00000458333.2,ENST00000540654.1	chr11	62748731:62748855:62749313:62749482:62751008:62751163,	62749314	62749482	62749334	62749334	Frame_Shift_Del	A	-	p.A260fs
COAD	TCGA-A6-5661-01	SLC25A12	ENST00000422440.2,ENST00000263812.4,ENST00000392592.4	chr2	172666733:172666786:172669848:172670007:172671630:172671712,	172669849	172670007	172669908	172669908	Frame_Shift_Del	T	-	p.N371fs
COAD	TCGA-AZ-6598-01	SLC25A13	ENST00000416240.2,ENST00000265631.5,ENST00000542654.1	chr7	95761054:95761193:95775867:95776008:95799356:95799437,	95775868	95776008	95775880	95775880	Frame_Shift_Del	A	-	p.G481fs
COAD	TCGA-AD-6890-01	SLC25A19	ENST00000416858.2,ENST00000581988.1	chr17	73282480:73282540:73282713:73282883:73285434:73285467,73282480:73282540:73282713:73282883:73284582:73284672,	73282714	73282883	73282773	73282774	Frame_Shift_Del	AC	-	p.25_25del
COAD	TCGA-AD-6889-01	SLC25A33	ENST00000302692.6	chr1	9633403:9633470:9640011:9640292:9642356:9645237,	9640012	9640292	9640224	9640225	Frame_Shift_Ins	-	T	p.S232fs
COAD	TCGA-AA-3663-01	SLC25A34	ENST00000489568.1,ENST00000294454.5	chr1	16064587:16064740:16065088:16065223:16065718:16065830,	16065089	16065223	16065124	16065125	Frame_Shift_Ins	-	G	p.A211fs
COAD	TCGA-AU-6004-01	SLC25A43	ENST00000488158.1	chrX	118533371:118533641:118540422:118540664:118585971:118586106,118533371:118533641:118540422:118540664:118544152:118544325,	118540423	118540664	118540438	118540439	Frame_Shift_Del	CA	-	p.97_97del
COAD	TCGA-G4-6588-01	SLC27A3	ENST00000483574.2,ENST00000368661.3,ENST00000484014.1	chr1	153748442:153748640:153748993:153749203:153749537:153749696,	153748994	153749203	153749150	153749150	Frame_Shift_Del	C	-	p.S322fs
COAD	TCGA-G4-6628-01	SLC27A3	ENST00000483574.2,ENST00000368661.3,ENST00000484014.1	chr1	153748442:153748640:153748993:153749203:153749537:153749696,	153748994	153749203	153749150	153749150	Frame_Shift_Del	C	-	p.S322fs
COAD	TCGA-F4-6570-01	SLC2A8	ENST00000373371.3,ENST00000451404.1,ENST00000423934.1,ENST00000373360.3,ENST00000419917.1,ENST00000430147.1	chr9	130162242:130162285:130164835:130165032:130166016:130166070,130162242:130162285:130164835:130165032:130165938:130166026,	130164836	130165032	130164880	130164880	Frame_Shift_Del	C	-	p.V190fs
COAD	TCGA-A6-6650-01	SLC30A8	ENST00000456015.2,ENST00000518521.1	chr8	118147566:118147637:118159192:118159392:118165182:118165214,	118159193	118159392	118159307	118159307	Frame_Shift_Del	G	-	p.K62fs
COAD	TCGA-A6-6781-01	SLC35G1	ENST00000427197.1	chr10	95653778:95653968:95658327:95658508:95660508:95662490,	95658328	95658508	95658417	95658417	Frame_Shift_Del	A	-	p.V88fs
COAD	TCGA-CM-4743-01	SLC38A7	ENST00000219320.4,ENST00000564010.1,ENST00000566598.1,ENST00000570101.1	chr16	58704016:58704071:58704948:58705148:58705999:58706147,	58704949	58705148	58705111	58705111	Frame_Shift_Del	C	-	p.V357fs
COAD	TCGA-A6-5665-01	SLC38A9	ENST00000396865.2,ENST00000515159.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54941616:54941723:54945034:54945142:54948356:54948551,	54945035	54945142	54945040	54945041	Frame_Shift_Ins	-	T	p.V352fs
COAD	TCGA-F4-6856-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95357932	95357932	Frame_Shift_Del	T	-	p.A504fs
COAD	TCGA-AD-6889-01	SLC44A4	ENST00000544672.1,ENST00000414427.1,ENST00000229729.6	chr6	31842236:31842297:31842497:31842623:31842705:31842805,	31842498	31842623	31842534	31842535	Frame_Shift_Ins	-	T	p.N68fs
COAD	TCGA-CM-4743-01	SLC44A4	ENST00000544672.1,ENST00000414427.1,ENST00000229729.6	chr6	31842236:31842297:31842497:31842623:31842705:31842805,	31842498	31842623	31842534	31842535	Frame_Shift_Ins	-	T	p.N144fs
COAD	TCGA-AA-3663-01	SLC46A1	ENST00000584995.1,ENST00000581516.1	chr17	26732065:26732486:26732904:26733015:26733474:26733617,	26732905	26733015	26732939	26732939	Frame_Shift_Del	C	-	p.G65fs
COAD	TCGA-G4-6586-01	SLC4A9	ENST00000507527.1,ENST00000506545.1,ENST00000230993.6,ENST00000506757.2	chr5	139743023:139743140:139743312:139743487:139743638:139743772,	139743313	139743487	139743320	139743320	Frame_Shift_Del	G	-	p.F386fs
COAD	TCGA-AD-6889-01	SLC7A10	ENST00000253188.4	chr19	33701372:33701522:33701707:33701804:33702130:33702234,	33701708	33701804	33701729	33701729	Frame_Shift_Del	G	-	p.I365fs
COAD	TCGA-D5-6928-01	SLC7A10	ENST00000253188.4	chr19	33701372:33701522:33701707:33701804:33702130:33702234,	33701708	33701804	33701729	33701729	Frame_Shift_Del	G	-	p.I365fs
COAD	TCGA-CM-4743-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17402081	17402081	Frame_Shift_Del	T	-	p.D206fs
COAD	TCGA-CK-5913-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384332	21384332	Frame_Shift_Del	G	-	p.L431fs
COAD	TCGA-G4-6320-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384535	21384536	Frame_Shift_Ins	-	G	p.R363fs
COAD	TCGA-AZ-6598-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440668	27440668	Frame_Shift_Del	G	-	p.F155fs
COAD	TCGA-D5-6930-01	SLC9B1	ENST00000510243.1,ENST00000503584.1	chr4	103853280:103853456:103910956:103911098:103912799:103912869,	103910957	103911098	103911012	103911013	Frame_Shift_Ins	-	T	p.K52fs
COAD	TCGA-D5-6540-01	SLC9C1	ENST00000486574.1,ENST00000305815.5,ENST00000487372.1,ENST00000471295.1	chr3	111996551:111996707:111997575:111997704:111999529:111999630,	111997576	111997704	111997697	111997698	Frame_Shift_Ins	-	T	p.R66fs
COAD	TCGA-G4-6628-01	SLCO2A1	ENST00000462770.1,ENST00000493729.1,ENST00000310926.4	chr3	133663938:133664104:133666099:133666289:133667379:133667544,	133666100	133666289	133666103	133666103	Frame_Shift_Del	G	-	p.P431fs
COAD	TCGA-F4-6570-01	SLCO3A1	ENST00000553653.1,ENST00000424469.2,ENST00000555769.1,ENST00000318445.6	chr15	92638110:92638209:92647508:92647772:92663694:92663859,	92647509	92647772	92647726	92647726	Frame_Shift_Del	C	-	p.H321fs
COAD	TCGA-CK-4948-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806856	33806857	Frame_Shift_Ins	-	A	p.V125fs
COAD	TCGA-G4-6586-01	SLFN5	ENST00000299977.4	chr17	33587989:33588115:33591201:33591922:33592090:33593379,	33591202	33591922	33591628	33591628	Frame_Shift_Del	C	-	p.T522fs
COAD	TCGA-G4-6586-01	SLIT3	ENST00000518092.1	chr5	168110970:168111101:168112721:168112932:168113983:168114121,	168112722	168112932	168112909	168112909	Frame_Shift_Del	G	-	p.P1113fs
COAD	TCGA-G4-6586-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168110970:168111101:168112691:168112932:168113983:168114121,	168112692	168112932	168112909	168112909	Frame_Shift_Del	G	-	p.P1113fs
COAD	TCGA-AZ-6598-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.N103fs
COAD	TCGA-AD-6889-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881731	43881731	Frame_Shift_Del	G	-	p.N103fs
COAD	TCGA-AD-6964-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182525	59182526	Frame_Shift_Del	TC	-	p.678_679del
COAD	TCGA-AD-6888-01	SLTM	ENST00000558486.1,ENST00000480144.1	chr15	59193458:59193486:59209133:59209198:59224554:59224642,	59209134	59209198	59209190	59209191	Frame_Shift_Ins	-	T	p.H87fs
COAD	TCGA-CM-6171-01	SMAD3	ENST00000558894.1,ENST00000559937.1,ENST00000560175.1,ENST00000540846.2,ENST00000327367.4,ENST00000559460.1,ENST00000439724.3	chr15	67457232:67457426:67457590:67457722:67459116:67459176,	67457591	67457722	67457639	67457640	Frame_Shift_Ins	-	C	p.F106fs
COAD	TCGA-G4-6320-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128633708:128633818:128638710:128638779:128640056:128640188,	128638711	128638779	128638751	128638751	Frame_Shift_Del	T	-	p.N376fs
COAD	TCGA-D5-6532-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47747898:47748020:47752172:47752298:47755904:47755980,	47752173	47752298	47752267	47752268	Frame_Shift_Del	AT	-	p.275_275del
COAD	TCGA-AA-3492-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559113	Frame_Shift_Del	G	-	p.P1074fs
COAD	TCGA-AD-6889-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559113	Frame_Shift_Del	G	-	p.P1074fs
COAD	TCGA-AD-6895-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559113	Frame_Shift_Del	G	-	p.P1074fs
COAD	TCGA-A6-6653-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45792225:45792366:45794974:45795233:45798212:45798451,	45794975	45795233	45795033	45795033	Frame_Shift_Del	T	-	p.K352fs
COAD	TCGA-G4-6309-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45792225:45792366:45794974:45795233:45798212:45798451,	45794975	45795233	45795116	45795116	Frame_Shift_Del	T	-	p.Q325fs
COAD	TCGA-A6-5665-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72961981:72962077:72962528:72962633:72962834:72962954,	72962529	72962633	72962620	72962620	Frame_Shift_Del	A	-	p.E919fs
COAD	TCGA-F4-6570-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000581711.1,ENST00000577880.1	chr18	2707804:2707918:2718155:2718233:2718312:2718432,	2718156	2718233	2718224	2718224	Frame_Shift_Del	A	-	p.F776fs
COAD	TCGA-AD-6889-01	SMG5	ENST00000361813.5	chr1	156219823:156220461:156220648:156220787:156221193:156221268,	156220649	156220787	156220734	156220735	Frame_Shift_Ins	-	C	p.A961fs
COAD	TCGA-D5-6930-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515267	183515267	Frame_Shift_Del	A	-	p.E804fs
COAD	TCGA-AZ-4615-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.R301fs
COAD	TCGA-AZ-6598-01	SMPD4	ENST00000351288.6,ENST00000412570.1,ENST00000339679.7,ENST00000443958.2,ENST00000451542.1,ENST00000435455.1,ENST00000431183.2	chr2	130914933:130914969:130921946:130922018:130925030:130925163,	130921947	130922018	130921967	130921967	Frame_Shift_Del	T	-	p.M321fs
COAD	TCGA-F4-6570-01	SMTN	ENST00000347557.2,ENST00000489337.1,ENST00000358743.1,ENST00000460658.1,ENST00000333137.7	chr22	31486946:31487468:31487660:31487833:31491288:31491441,	31487661	31487833	31487798	31487799	Frame_Shift_Ins	-	C	p.A533fs
COAD	TCGA-G4-6588-01	SMTN	ENST00000347557.2,ENST00000489337.1,ENST00000358743.1,ENST00000460658.1,ENST00000333137.7	chr22	31486946:31487468:31487660:31487833:31491288:31491441,	31487661	31487833	31487798	31487799	Frame_Shift_Ins	-	C	p.A533fs
COAD	TCGA-D5-6928-01	SMTN	ENST00000347557.2,ENST00000489337.1,ENST00000358743.1,ENST00000460658.1,ENST00000333137.7	chr22	31486946:31487468:31487660:31487833:31491288:31491441,	31487661	31487833	31487799	31487799	Frame_Shift_Del	C	-	p.A533fs
COAD	TCGA-D5-6540-01	SNAP23	ENST00000566035.1,ENST00000563830.1,ENST00000249647.3,ENST00000568841.1,ENST00000568514.1,ENST00000563765.1,ENST00000566327.1	chr15	42807434:42807552:42820459:42820618:42821872:42822002,	42820460	42820618	42820500	42820501	Frame_Shift_Ins	-	G	p.W103fs
COAD	TCGA-AA-3492-01	SND1	ENST00000484767.1	chr7	127544799:127544872:127569240:127569382:127630999:127631008,127544799:127544872:127569240:127569382:127714553:127714674,	127569241	127569382	127569248	127569248	Frame_Shift_Del	A	-	p.Q512fs
COAD	TCGA-AD-6889-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1,ENST00000524004.1	chr8	51465609:51465739:51503438:51503477:51569468:51569585,	51503439	51503477	51503442	51503442	Frame_Shift_Del	A	-	p.I271fs
COAD	TCGA-AA-3663-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409389.1,ENST00000409076.2	chr7	17841210:17841282:17843041:17843203:17854456:17854567,	17843042	17843203	17843045	17843045	Frame_Shift_Del	A	-	p.K742fs
COAD	TCGA-CM-6162-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409389.1,ENST00000409076.2	chr7	17854456:17854567:17855804:17855912:17861131:17861271,	17855805	17855912	17855827	17855827	Frame_Shift_Del	T	-	p.K644fs
COAD	TCGA-AU-6004-01	SOGA1	ENST00000456801.2,ENST00000465671.1	chr20	35412184:35412761:35414812:35415040:35421651:35423002,	35414813	35415040	35414897	35414897	Frame_Shift_Del	G	-	p.S1660fs
COAD	TCGA-D5-6927-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.E675fs
COAD	TCGA-AD-6964-01	SORBS2	ENST00000437304.2	chr4	186583388:186583396:186598150:186598792:186599576:186599632,	186598151	186598792	186598563	186598564	Frame_Shift_Ins	-	T	p.I27fs
COAD	TCGA-A6-6781-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091465	204091466	Frame_Shift_Ins	-	C	p.R321fs
COAD	TCGA-AA-3663-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091508	204091508	Frame_Shift_Del	C	-	p.S335fs
COAD	TCGA-CK-5916-01	SOX6	ENST00000316399.6,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16036487:16036596:16068059:16068247:16071258:16071484,16036487:16036596:16068059:16068247:16071300:16071484,	16068060	16068247	16068213	16068213	Frame_Shift_Del	A	-	p.G504fs
COAD	TCGA-AY-6197-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16119154:16119234:16133348:16133469:16205431:16205500,	16133349	16133469	16133368	16133369	Frame_Shift_Ins	-	G	p.P306fs
COAD	TCGA-A6-5661-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16119154:16119234:16133348:16133469:16205431:16205500,	16133349	16133469	16133369	16133369	Frame_Shift_Del	G	-	p.P306fs
COAD	TCGA-AZ-6598-01	SPAG17	ENST00000336338.5	chr1	118565926:118566086:118567860:118568039:118570896:118571017,	118567861	118568039	118567980	118567980	Frame_Shift_Del	G	-	p.Q1264fs
COAD	TCGA-CM-4746-01	SPARCL1	ENST00000541496.1	chr4	88416164:88416279:88420672:88420737:88450196:88450244,88416132:88416295:88420672:88420737:88450196:88450244,	88420673	88420737	88420707	88420707	Frame_Shift_Del	A	-	p.F7fs
COAD	TCGA-CK-5916-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123868387:123868643:123900386:123900541:123949340:123949550,	123900387	123900541	123900412	123900413	Frame_Shift_Ins	-	A	p.L580fs
COAD	TCGA-A6-5661-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705893	35705894	Frame_Shift_Ins	-	A	p.A883fs
COAD	TCGA-AZ-4315-01	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35727776:35727925:35740020:35740148:35740230:35740369,	35740021	35740148	35740074	35740074	Frame_Shift_Del	A	-	p.I1039fs
COAD	TCGA-AA-3713-01	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35771710:35771858:35773994:35774123:35776358:35776497,	35773995	35774123	35774083	35774084	Frame_Shift_Ins	-	A	p.V1346fs
COAD	TCGA-G4-6628-01	SPG21	ENST00000559199.1,ENST00000204566.2,ENST00000416889.2,ENST00000433215.2	chr15	65261591:65261699:65262451:65262560:65266939:65267085,	65262452	65262560	65262526	65262526	Frame_Shift_Del	T	-	p.I163fs
COAD	TCGA-AD-6964-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132534	49132534	Frame_Shift_Del	C	-	p.A490fs
COAD	TCGA-AU-6004-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926165	50926165	Frame_Shift_Del	C	-	p.T51fs
COAD	TCGA-F4-6570-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926264	50926264	Frame_Shift_Del	T	-	p.L84fs
COAD	TCGA-AU-6004-01	SPINT1	ENST00000344051.4	chr15	41145746:41145825:41145908:41146127:41146257:41146284,	41145909	41146127	41146120	41146120	Frame_Shift_Del	C	-	p.F318fs
COAD	TCGA-AY-6197-01	SPINT1	ENST00000344051.4,ENST00000562057.1,ENST00000431806.1	chr15	41145985:41146079:41146594:41146720:41146836:41146887,41146013:41146127:41146594:41146720:41146836:41146887,41146257:41146284:41146594:41146720:41146836:41146887,	41146595	41146720	41146715	41146715	Frame_Shift_Del	A	-	p.E354fs
COAD	TCGA-AA-3713-01	SPNS2	ENST00000329078.3	chr17	4428351:4428488:4433926:4434078:4434347:4434414,	4433927	4434078	4433969	4433969	Frame_Shift_Del	G	-	p.I205fs
COAD	TCGA-AD-6889-01	SPRED3	ENST00000587947.1	chr19	38880694:38880792:38880938:38881119:38882585:38882754,	38880939	38881119	38881004	38881005	Frame_Shift_Ins	-	G	p.V21fs
COAD	TCGA-AA-3492-01	SPRED3	ENST00000587947.1	chr19	38880694:38880792:38880938:38881119:38882585:38882754,	38880939	38881119	38881061	38881062	Frame_Shift_Ins	-	G	p.E40fs
COAD	TCGA-D5-6928-01	SPRED3	ENST00000587947.1	chr19	38880694:38880792:38880938:38881119:38882585:38882754,	38880939	38881119	38881062	38881062	Frame_Shift_Del	G	-	p.E40fs
COAD	TCGA-AM-5820-01	SRA1	ENST00000523259.1	chr5	139930425:139930496:139930645:139931769:139936731:139936857,	139930646	139931769	139931628	139931629	Frame_Shift_Ins	-	GT	p.V110fs
COAD	TCGA-AM-5820-01	SRA1	ENST00000602775.1,ENST00000520427.1,ENST00000336283.6	chr5	139930645:139930754:139931566:139931769:139936731:139936857,	139931567	139931769	139931628	139931629	Frame_Shift_Ins	-	GT	p.V110fs
COAD	TCGA-AM-5820-01	SRA1	ENST00000523259.1	chr5	139930425:139930496:139930645:139931769:139936731:139936857,	139930646	139931769	139931629	139931630	Frame_Shift_Ins	-	G	p.V110fs
COAD	TCGA-AM-5820-01	SRA1	ENST00000602775.1,ENST00000520427.1,ENST00000336283.6	chr5	139930645:139930754:139931566:139931769:139936731:139936857,	139931567	139931769	139931629	139931630	Frame_Shift_Ins	-	G	p.V110fs
COAD	TCGA-A6-6653-01	SRCAP	ENST00000483083.1,ENST00000262518.4	chr16	30733445:30733607:30733883:30734069:30734283:30734550,	30733884	30734069	30733910	30733910	Frame_Shift_Del	G	-	p.A1244fs
COAD	TCGA-A6-6653-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
COAD	TCGA-AD-6889-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
COAD	TCGA-AY-6196-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
COAD	TCGA-AZ-6598-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
COAD	TCGA-CK-5916-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
COAD	TCGA-CM-6171-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
COAD	TCGA-D5-6928-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
COAD	TCGA-CK-5913-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736371	Frame_Shift_Del	C	-	p.Q1875fs
COAD	TCGA-AD-5900-01	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42263062	42263063	Frame_Shift_Ins	-	C	p.S106fs
COAD	TCGA-G4-6588-01	SS18	ENST00000539849.1,ENST00000269138.5	chr18	23632786:23632809:23637552:23637706:23667464:23667541,	23637553	23637706	23637600	23637600	Frame_Shift_Del	C	-	p.G113fs
COAD	TCGA-AD-5900-01	SSBP4	ENST00000600628.2,ENST00000270061.7	chr19	18541652:18541740:18542162:18542228:18542456:18542515,	18542163	18542228	18542164	18542165	Frame_Shift_Ins	-	C	p.G124fs
COAD	TCGA-AZ-6598-01	SSBP4	ENST00000600628.2,ENST00000270061.7	chr19	18541652:18541740:18542162:18542228:18542456:18542515,	18542163	18542228	18542164	18542165	Frame_Shift_Ins	-	C	p.G124fs
COAD	TCGA-AD-6889-01	SSBP4	ENST00000600628.2,ENST00000270061.7	chr19	18541652:18541740:18542162:18542228:18542456:18542515,	18542163	18542228	18542165	18542165	Frame_Shift_Del	C	-	p.G124fs
COAD	TCGA-D5-6928-01	SSBP4	ENST00000600628.2,ENST00000270061.7	chr19	18541652:18541740:18542162:18542228:18542456:18542515,	18542163	18542228	18542165	18542165	Frame_Shift_Del	C	-	p.G124fs
COAD	TCGA-AZ-6598-01	SSH1	ENST00000546433.1,ENST00000360239.3,ENST00000551165.1,ENST00000326495.5,ENST00000326470.5	chr12	109186196:109186605:109192775:109192976:109194555:109194702,	109192776	109192976	109192871	109192871	Frame_Shift_Del	T	-	p.A419fs
COAD	TCGA-AA-3663-01	ST3GAL6	ENST00000485145.1,ENST00000497621.1,ENST00000469105.1,ENST00000492254.1,ENST00000486334.2,ENST00000493953.1,ENST00000477899.1,ENST00000483910.1,ENST00000462152.1,ENST00000394162.1	chr3	98503788:98503884:98506879:98507066:98507169:98507246,	98506880	98507066	98506942	98506942	Frame_Shift_Del	T	-	p.L165fs
COAD	TCGA-AZ-6598-01	ST3GAL6	ENST00000485145.1,ENST00000497621.1,ENST00000469105.1,ENST00000492254.1,ENST00000486334.2,ENST00000493953.1,ENST00000477899.1,ENST00000483910.1,ENST00000462152.1,ENST00000394162.1	chr3	98503788:98503884:98506879:98507066:98507169:98507246,	98506880	98507066	98506942	98506942	Frame_Shift_Del	T	-	p.L165fs
COAD	TCGA-AD-5900-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8751554	8751554	Frame_Shift_Del	G	-	p.P428fs
COAD	TCGA-AA-3713-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543930	Frame_Shift_Del	G	-	p.S797fs
COAD	TCGA-AD-6889-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543930	Frame_Shift_Del	G	-	p.S797fs
COAD	TCGA-A6-6781-01	STAB1	ENST00000321725.6	chr3	52546843:52546974:52547145:52547257:52547732:52547810,	52547146	52547257	52547151	52547152	Frame_Shift_Ins	-	T	p.H1055fs
COAD	TCGA-A6-6780-01	STAB1	ENST00000321725.6	chr3	52549438:52549522:52550058:52550254:52550371:52550467,	52550059	52550254	52550119	52550119	Frame_Shift_Del	G	-	p.L1336fs
COAD	TCGA-G4-6586-01	STAB1	ENST00000321725.6,ENST00000481626.1	chr3	52554855:52555021:52555376:52555526:52555611:52555716,	52555377	52555526	52555468	52555468	Frame_Shift_Del	T	-	p.G2000fs
COAD	TCGA-A6-5662-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123215229:123215378:123217270:123217399:123220396:123220620,	123217271	123217399	123217389	123217389	Frame_Shift_Del	A	-	p.D1014fs
COAD	TCGA-AY-6197-01	STARD13	ENST00000255486.4,ENST00000336934.5,ENST00000399365.3	chr13	33680894:33681071:33684009:33684227:33684822:33685044,	33684010	33684227	33684168	33684168	Frame_Shift_Del	G	-	p.S846fs
COAD	TCGA-A6-5665-01	STARD7	ENST00000337288.5	chr2	96858106:96858206:96858815:96858898:96858979:96859090,	96858816	96858898	96858840	96858840	Frame_Shift_Del	T	-	p.N240fs
COAD	TCGA-AM-5820-01	STAT1	ENST00000452281.1,ENST00000409465.1,ENST00000540176.1,ENST00000464072.1,ENST00000361099.3,ENST00000392322.3,ENST00000392323.2	chr2	191843581:191843727:191844497:191844592:191845345:191845395,	191844498	191844592	191844524	191844524	Frame_Shift_Del	T	-	p.H568fs
COAD	TCGA-D5-6928-01	STAT1	ENST00000452281.1,ENST00000409465.1,ENST00000540176.1,ENST00000464072.1,ENST00000361099.3,ENST00000392322.3,ENST00000392323.2	chr2	191843581:191843727:191844497:191844592:191845345:191845395,	191844498	191844592	191844524	191844524	Frame_Shift_Del	T	-	p.H568fs
COAD	TCGA-CM-5861-01	STK17B	ENST00000263955.4,ENST00000409228.1	chr2	197010634:197010779:197021162:197021375:197027985:197028151,	197021163	197021375	197021224	197021224	Frame_Shift_Del	G	-	p.R92fs
COAD	TCGA-AZ-4615-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775341	23775341	Frame_Shift_Del	A	-	p.E223fs
COAD	TCGA-G4-6586-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775341	23775341	Frame_Shift_Del	A	-	p.E223fs
COAD	TCGA-D5-6540-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645390	70645390	Frame_Shift_Del	A	-	p.E613fs
COAD	TCGA-AA-3713-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184930779	184930780	Frame_Shift_Ins	-	A	p.S263fs
COAD	TCGA-CM-4746-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184930779	184930780	Frame_Shift_Ins	-	A	p.S263fs
COAD	TCGA-A6-5661-01	STRN	ENST00000263918.4	chr2	37111074:37111218:37113858:37113969:37121040:37121176,	37113859	37113969	37113865	37113865	Frame_Shift_Del	C	-	p.V346fs
COAD	TCGA-G4-6309-01	STX5	ENST00000491231.1,ENST00000294179.3	chr11	62595048:62595103:62598490:62598734:62599425:62599503,	62598491	62598734	62598584	62598585	Frame_Shift_Ins	-	G	p.P44fs
COAD	TCGA-CK-5916-01	STX5	ENST00000491231.1,ENST00000294179.3	chr11	62595048:62595103:62598490:62598734:62599425:62599503,	62598491	62598734	62598585	62598585	Frame_Shift_Del	G	-	p.P44fs
COAD	TCGA-AU-6004-01	STXBP2	ENST00000597068.1,ENST00000414284.2,ENST00000602355.1,ENST00000599400.1,ENST00000599737.1,ENST00000221283.5,ENST00000441779.2	chr19	7712047:7712133:7712239:7712397:7712610:7712696,	7712240	7712397	7712336	7712337	Frame_Shift_Del	AG	-	p.545_545del
COAD	TCGA-AD-6889-01	STYX	ENST00000442123.2,ENST00000354586.4	chr14	53217400:53217498:53223268:53223329:53224036:53224073,	53223269	53223329	53223317	53223317	Frame_Shift_Del	T	-	p.R97fs
COAD	TCGA-CK-5916-01	SUCLA2	ENST00000544100.1,ENST00000543413.1,ENST00000378654.3,ENST00000534875.1,ENST00000467222.1	chr13	48523074:48523163:48523617:48523738:48528274:48528417,	48523618	48523738	48523712	48523712	Frame_Shift_Del	A	-	p.G379fs
COAD	TCGA-CM-6162-01	SULF1	ENST00000260128.4,ENST00000528783.1,ENST00000419716.3,ENST00000529134.1,ENST00000402687.4,ENST00000458141.2	chr8	70475773:70475846:70476150:70476382:70488204:70488262,	70476151	70476382	70476323	70476324	Frame_Shift_Ins	-	A	p.R38fs
COAD	TCGA-AY-6197-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.H72fs
COAD	TCGA-F4-6856-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.H72fs
COAD	TCGA-G4-6628-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.H72fs
COAD	TCGA-AD-6889-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2	chr8	70488204:70488444:70498591:70498743:70501280:70501355,70488204:70488444:70498591:70498743:70501206:70501376,	70498592	70498743	70498635	70498635	Frame_Shift_Del	C	-	p.I152fs
COAD	TCGA-AD-6895-01	SULF2	ENST00000361612.4,ENST00000463221.2,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46318869:46319039:46331262:46331414:46365446:46365686,	46331263	46331414	46331333	46331333	Frame_Shift_Del	T	-	p.N166fs
COAD	TCGA-D5-6927-01	SULT1B1	ENST00000310613.3	chr4	70596218:70596399:70599130:70599225:70599855:70599982,	70599131	70599225	70599153	70599153	Frame_Shift_Del	A	-	p.L192fs
COAD	TCGA-CM-4743-01	SUSD2	ENST00000358321.3,ENST00000463101.1	chr22	24581453:24581539:24581628:24581897:24581983:24582127,	24581629	24581897	24581885	24581885	Frame_Shift_Del	C	-	p.R442fs
COAD	TCGA-A6-6780-01	SV2C	ENST00000502798.2,ENST00000322285.7	chr5	75427474:75428155:75490743:75490924:75505560:75505712,	75490744	75490924	75490798	75490801	Frame_Shift_Del	CAGA	-	p.212_213del
COAD	TCGA-AD-6964-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760115	29760116	Frame_Shift_Ins	-	C	p.M1437fs
COAD	TCGA-A6-6653-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-A6-6780-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-A6-6781-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-AA-3713-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-AD-6889-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-AY-6197-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-AZ-6598-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-CM-6162-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-G4-6588-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
COAD	TCGA-AD-6964-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527421	115527421	Frame_Shift_Del	A	-	p.S878fs
COAD	TCGA-G4-6625-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58442765:58442902:58443467:58443623:58443889:58443935,	58443468	58443623	58443507	58443508	Frame_Shift_Ins	-	T	p.L1317fs
COAD	TCGA-AA-3492-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000461538.1,ENST00000371001.2	chr20	58476716:58476865:58482418:58482479:58486804:58486900,	58482419	58482479	58482441	58482441	Frame_Shift_Del	T	-	p.V338fs
COAD	TCGA-DM-A28F-01	SYNE2	ENST00000357395.3,ENST00000555022.1,ENST00000358025.3,ENST00000553289.1,ENST00000554805.1,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64685925:64686128:64687154:64687355:64688293:64688422,	64687155	64687355	64687314	64687315	Frame_Shift_Ins	-	G	p.S182fs
COAD	TCGA-D5-6930-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028657	150028657	Frame_Shift_Del	C	-	p.Q517fs
COAD	TCGA-CK-5915-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028961	150028962	Frame_Shift_Ins	-	C	p.G619fs
COAD	TCGA-AY-6197-01	SYNPR	ENST00000478300.1	chr3	63264352:63264418:63466507:63466632:63542218:63542417,	63466508	63466632	63466509	63466509	Frame_Shift_Del	T	-	p.L9fs
COAD	TCGA-AZ-6598-01	TAC4	ENST00000326219.5	chr17	47917211:47917271:47918913:47918946:47921425:47921519,47915670:47916035:47918913:47918946:47921425:47921519,	47918914	47918946	47918915	47918915	Frame_Shift_Del	T	-	p.A78fs
COAD	TCGA-AD-6895-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123842738	123842738	Frame_Shift_Del	G	-	p.Q241fs
COAD	TCGA-AA-3492-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.H780fs
COAD	TCGA-AU-6004-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.H780fs
COAD	TCGA-G4-6586-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.H780fs
COAD	TCGA-AU-6004-01	TAF1C	ENST00000544090.1,ENST00000341690.6	chr16	84212727:84213457:84213551:84213686:84213775:84213934,	84213552	84213686	84213651	84213651	Frame_Shift_Del	G	-	p.Q440fs
COAD	TCGA-AU-6004-01	TAF1C	ENST00000570117.1,ENST00000566732.1,ENST00000564774.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000564208.1	chr16	84212727:84213457:84213551:84213689:84213775:84213934,	84213552	84213689	84213651	84213651	Frame_Shift_Del	G	-	p.Q440fs
COAD	TCGA-AZ-4615-01	TAF1C	ENST00000544090.1,ENST00000341690.6	chr16	84212727:84213457:84213551:84213686:84213775:84213934,	84213552	84213686	84213651	84213651	Frame_Shift_Del	G	-	p.Q440fs
COAD	TCGA-AZ-4615-01	TAF1C	ENST00000570117.1,ENST00000566732.1,ENST00000564774.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000564208.1	chr16	84212727:84213457:84213551:84213689:84213775:84213934,	84213552	84213689	84213651	84213651	Frame_Shift_Del	G	-	p.Q440fs
COAD	TCGA-CM-5861-01	TAF1C	ENST00000544090.1,ENST00000341690.6	chr16	84212727:84213457:84213551:84213686:84213775:84213934,	84213552	84213686	84213651	84213651	Frame_Shift_Del	G	-	p.Q440fs
COAD	TCGA-CM-5861-01	TAF1C	ENST00000570117.1,ENST00000566732.1,ENST00000564774.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000564208.1	chr16	84212727:84213457:84213551:84213689:84213775:84213934,	84213552	84213689	84213651	84213651	Frame_Shift_Del	G	-	p.Q440fs
COAD	TCGA-AZ-6598-01	TAF1C	ENST00000569609.1	chr16	84217302:84217384:84218456:84218666:84220506:84220587,84217015:84217113:84218456:84218666:84220506:84220587,	84218457	84218666	84218546	84218546	Frame_Shift_Del	G	-	p.L17fs
COAD	TCGA-AZ-6598-01	TAF1C	ENST00000564345.1,ENST00000564454.1	chr16	84217302:84217384:84218456:84218595:84220506:84220587,	84218457	84218595	84218546	84218546	Frame_Shift_Del	G	-	p.L17fs
COAD	TCGA-A6-5665-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471452	93471453	Frame_Shift_Ins	-	T	p.K94fs
COAD	TCGA-A6-5665-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471452	93471453	Frame_Shift_Ins	-	T	p.K94fs
COAD	TCGA-A6-6781-01	TAOK3	ENST00000537305.1,ENST00000419821.2,ENST00000392533.3	chr12	118636855:118637062:118639100:118639268:118650718:118650800,	118639101	118639268	118639156	118639157	Frame_Shift_Ins	-	T	p.I311fs
COAD	TCGA-CM-5861-01	TAOK3	ENST00000537305.1,ENST00000419821.2,ENST00000392533.3	chr12	118636855:118637062:118639100:118639268:118650718:118650800,	118639101	118639268	118639156	118639157	Frame_Shift_Ins	-	T	p.I311fs
COAD	TCGA-A6-5661-01	TBC1D10C	ENST00000312390.5,ENST00000542590.1,ENST00000529635.1,ENST00000533745.1	chr11	67173065:67173172:67173373:67173488:67174097:67174132,	67173374	67173488	67173450	67173450	Frame_Shift_Del	C	-	p.G181fs
COAD	TCGA-A6-5661-01	TBC1D10C	ENST00000526387.1,ENST00000530967.2	chr11	67173065:67173172:67173377:67173488:67174097:67174132,	67173378	67173488	67173450	67173450	Frame_Shift_Del	C	-	p.G181fs
COAD	TCGA-CK-5913-01	TBC1D12	ENST00000225235.4	chr10	96282100:96282210:96290958:96291217:96292784:96293054,	96290959	96291217	96291203	96291203	Frame_Shift_Del	A	-	p.T748fs
COAD	TCGA-G4-6628-01	TBC1D12	ENST00000225235.4	chr10	96282100:96282210:96290958:96291217:96292784:96293054,	96290959	96291217	96291203	96291203	Frame_Shift_Del	A	-	p.T748fs
COAD	TCGA-AU-6004-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.H30fs
COAD	TCGA-CM-5349-01	TBCA	ENST00000522370.1,ENST00000517679.1,ENST00000380377.4,ENST00000518218.1	chr5	76987228:76987323:76989090:76989177:77004066:77004171,	76989091	76989177	76989143	76989143	Frame_Shift_Del	G	-	p.P65fs
COAD	TCGA-F4-6570-01	TBL1X	ENST00000380961.1,ENST00000407597.2,ENST00000536365.1,ENST00000424279.1,ENST00000217964.7	chrX	9659618:9659751:9660152:9660294:9661188:9661252,	9660153	9660294	9660202	9660202	Frame_Shift_Del	G	-	p.N215fs
COAD	TCGA-AM-5820-01	TBRG1	ENST00000530731.1,ENST00000375005.4,ENST00000284290.4	chr11	124494826:124494897:124495566:124495799:124496708:124496946,124494826:124494897:124495566:124495799:124496799:124496831,	124495567	124495799	124495762	124495763	Frame_Shift_Ins	-	A	p.E139fs
COAD	TCGA-A6-6781-01	TBRG1	ENST00000441174.3	chr11	124495661:124495799:124496368:124496505:124496799:124496831,	124496369	124496505	124496499	124496499	Frame_Shift_Del	G	-	p.L195fs
COAD	TCGA-AA-3660-01	TCEA3	ENST00000450454.2	chr1	23710838:23710910:23713765:23713912:23720371:23720526,	23713766	23713912	23713810	23713811	Frame_Shift_Del	AG	-	p.308_308del
COAD	TCGA-AD-6964-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Del	GA	-	p.868_868del
COAD	TCGA-G4-6628-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Del	GA	-	p.868_868del
COAD	TCGA-AA-3663-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564716	42564716	Frame_Shift_Del	G	-	p.L1943fs
COAD	TCGA-AD-6895-01	TCF7L1	ENST00000282111.3	chr2	85510617:85510701:85529606:85529739:85531017:85531120,	85529607	85529739	85529689	85529689	Frame_Shift_Del	C	-	p.S203fs
COAD	TCGA-AU-6004-01	TCF7L2	ENST00000543371.1,ENST00000545257.1,ENST00000538897.1,ENST00000536810.1,ENST00000349937.2,ENST00000355995.4,ENST00000369397.4,ENST00000534894.1,ENST00000352065.5	chr10	114799783:114799885:114900942:114901075:114903681:114903772,	114900943	114901075	114900984	114900984	Frame_Shift_Del	C	-	p.H198fs
COAD	TCGA-AY-6197-01	TCF7L2	ENST00000543371.1,ENST00000545257.1,ENST00000538897.1,ENST00000536810.1,ENST00000349937.2,ENST00000355995.4,ENST00000369397.4,ENST00000534894.1,ENST00000352065.5	chr10	114799783:114799885:114900942:114901075:114903681:114903772,	114900943	114901075	114900984	114900984	Frame_Shift_Del	C	-	p.H198fs
COAD	TCGA-G4-6320-01	TCF7L2	ENST00000543371.1,ENST00000545257.1,ENST00000538897.1,ENST00000536810.1,ENST00000349937.2,ENST00000355995.4,ENST00000369397.4,ENST00000534894.1,ENST00000352065.5	chr10	114799783:114799885:114900942:114901075:114903681:114903772,	114900943	114901075	114900984	114900984	Frame_Shift_Del	C	-	p.H175fs
COAD	TCGA-CM-6171-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
COAD	TCGA-AA-3713-01	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67811755:67811811:67812424:67812569:67814899:67815039,	67812425	67812569	67812475	67812476	Frame_Shift_Ins	-	C	p.M141fs
COAD	TCGA-CA-5797-01	TCP11L1	ENST00000527661.1,ENST00000334274.4	chr11	33061560:33061752:33065295:33065482:33076138:33076271,33061132:33061338:33065295:33065482:33076138:33076271,	33065296	33065482	33065349	33065349	Frame_Shift_Del	A	-	p.V10fs
COAD	TCGA-AZ-6598-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102847	61102848	Frame_Shift_Ins	-	A	p.F403fs
COAD	TCGA-A6-6780-01	TEFM	ENST00000580840.1,ENST00000581216.1	chr17	29227430:29227580:29231083:29231547:29233185:29233253,	29231084	29231547	29231152	29231152	Frame_Shift_Del	T	-	p.R143fs
COAD	TCGA-G4-6588-01	TELO2	ENST00000262319.6	chr16	1550563:1550700:1551420:1551500:1551663:1551774,	1551421	1551500	1551464	1551464	Frame_Shift_Del	C	-	p.S442fs
COAD	TCGA-AA-3663-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1856fs
COAD	TCGA-AU-6004-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1856fs
COAD	TCGA-AY-6197-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1856fs
COAD	TCGA-CM-6171-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1856fs
COAD	TCGA-A6-5665-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
COAD	TCGA-G4-6628-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852647	20852647	Frame_Shift_Del	C	-	p.G1081fs
COAD	TCGA-AZ-4615-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157183	106157186	Frame_Shift_Del	TGTC	-	p.695_696del
COAD	TCGA-F4-6856-01	TEX14	ENST00000582740.1,ENST00000389934.3,ENST00000349033.5,ENST00000240361.8	chr17	56679166:56679317:56679760:56679951:56682338:56682490,	56679761	56679951	56679907	56679908	Frame_Shift_Ins	-	T	p.A467fs
COAD	TCGA-CM-4744-01	TEX2	ENST00000258991.3,ENST00000583097.1,ENST00000584379.1	chr17	62232306:62232327:62238160:62238293:62248459:62248559,	62238161	62238293	62238258	62238259	Frame_Shift_Ins	-	C	p.S910fs
COAD	TCGA-A6-5665-01	TFAP2B	ENST00000393655.3	chr6	50786438:50786685:50791119:50791578:50796331:50796392,	50791120	50791578	50791252	50791252	Frame_Shift_Del	C	-	p.P71fs
COAD	TCGA-AA-3492-01	TFAP2B	ENST00000393655.3	chr6	50786438:50786685:50791119:50791578:50796331:50796392,	50791120	50791578	50791290	50791290	Frame_Shift_Del	C	-	p.D84fs
COAD	TCGA-CK-5916-01	TFCP2L1	ENST00000464621.1,ENST00000263707.5	chr2	121983137:121983189:121989401:121989544:121991666:121991770,	121989402	121989544	121989464	121989464	Frame_Shift_Del	G	-	p.Q427fs
COAD	TCGA-CM-6171-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115590927:115591003:115594639:115594696:115596732:115596847,	115594640	115594696	115594656	115594657	Frame_Shift_Ins	-	T	p.K112fs
COAD	TCGA-G4-6320-01	TFF3	ENST00000398431.2	chr21	43732162:43732379:43733594:43733785:43735402:43735446,	43733595	43733785	43733677	43733677	Frame_Shift_Del	G	-	p.K64fs
COAD	TCGA-G4-6320-01	TFF3	ENST00000291525.10	chr21	43732162:43732379:43733594:43733741:43735402:43735446,	43733595	43733741	43733677	43733677	Frame_Shift_Del	G	-	p.K64fs
COAD	TCGA-DM-A1D4-01	TFPI	ENST00000392365.1,ENST00000426055.1,ENST00000481132.1,ENST00000233156.3	chr2	188331728:188331769:188332479:188332659:188348850:188348943,	188332480	188332659	188332532	188332533	Frame_Shift_Ins	-	C	p.G252fs
COAD	TCGA-DM-A28C-01	TGIF1	ENST00000343820.5,ENST00000407501.2,ENST00000546979.1	chr18	3450322:3450503:3456351:3456578:3457362:3457454,	3456352	3456578	3456403	3456418	Frame_Shift_Del	TTCCCTTGGACCTTTC	-	p.23_28del
COAD	TCGA-D5-6927-01	TGIF1	ENST00000343820.5,ENST00000407501.2,ENST00000546979.1	chr18	3450322:3450503:3456351:3456578:3457362:3457454,	3456352	3456578	3456473	3456474	Frame_Shift_Del	TG	-	p.26_26del
COAD	TCGA-D5-6932-01	TGIF1	ENST00000343820.5,ENST00000407501.2,ENST00000546979.1	chr18	3450322:3450503:3456351:3456578:3457362:3457454,	3456352	3456578	3456550	3456550	Frame_Shift_Del	C	-	p.S72fs
COAD	TCGA-CK-5915-01	TGIF1	ENST00000343820.5,ENST00000407501.2,ENST00000546979.1	chr18	3450322:3450503:3456351:3456578:3457362:3457454,	3456352	3456578	3456572	3456573	Frame_Shift_Ins	-	CT	p.T79fs
COAD	TCGA-F4-6570-01	THOC1	ENST00000579232.1,ENST00000582313.1,ENST00000580038.1,ENST00000261600.6	chr18	259681:259730:260185:260304:264025:264092,	260186	260304	260205	260205	Frame_Shift_Del	T	-	p.N119fs
COAD	TCGA-D5-6538-01	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000498422.1,ENST00000469153.1	chr3	63821976:63822034:63823651:63823738:63824047:63824175,	63823652	63823738	63823692	63823693	Frame_Shift_Ins	-	T	p.K104fs
COAD	TCGA-AA-3663-01	THSD4	ENST00000355327.3,ENST00000261862.6	chr15	71507373:71507738:71534987:71535435:71548951:71549054,	71534988	71535435	71535345	71535346	Frame_Shift_Ins	-	G	p.H274fs
COAD	TCGA-AY-6197-01	THSD4	ENST00000355327.3,ENST00000261862.6	chr15	71548951:71549054:71704025:71704162:71952868:71953073,	71704026	71704162	71704113	71704113	Frame_Shift_Del	C	-	p.T368fs
COAD	TCGA-A6-6781-01	THSD7A	ENST00000408005.2,ENST00000423059.4	chr7	11416196:11416284:11418696:11418907:11419256:11419339,	11418697	11418907	11418728	11418729	Frame_Shift_Ins	-	C	p.G1590fs
COAD	TCGA-AD-5900-01	THYN1	ENST00000392595.2,ENST00000392594.3,ENST00000341541.3	chr11	134118181:134118378:134118702:134118853:134119060:134119156,	134118703	134118853	134118753	134118753	Frame_Shift_Del	T	-	p.N194fs
COAD	TCGA-G4-6588-01	TIE1	ENST00000538015.1,ENST00000372476.3,ENST00000441333.2	chr1	43772510:43772666:43772812:43772944:43773102:43773243,	43772813	43772944	43772910	43772910	Frame_Shift_Del	C	-	p.C201fs
COAD	TCGA-G4-6628-01	TIMD4	ENST00000274532.2	chr5	156353273:156353323:156376661:156376742:156378522:156378801,156375426:156375510:156376661:156376742:156378522:156378801,	156376662	156376742	156376662	156376663	Frame_Shift_Ins	-	T	p.E254fs
COAD	TCGA-AA-3663-01	TIMM50	ENST00000602265.1,ENST00000314349.4,ENST00000601403.1,ENST00000595961.1,ENST00000607714.1,ENST00000602028.1,ENST00000597666.1,ENST00000544017.1,ENST00000601358.1	chr19	39976826:39976931:39977036:39977135:39978700:39978814,	39977037	39977135	39977066	39977066	Frame_Shift_Del	C	-	p.D312fs
COAD	TCGA-A6-5661-01	TINF2	ENST00000559969.1,ENST00000558476.1,ENST00000267415.7,ENST00000559549.1,ENST00000540705.1,ENST00000399423.4	chr14	24709884:24710081:24710225:24710322:24710409:24710517,	24710226	24710322	24710284	24710285	Frame_Shift_Del	AG	-	p.182_183del
COAD	TCGA-CM-6675-01	TIPARP	ENST00000481853.1,ENST00000486483.1,ENST00000461166.1,ENST00000542783.1,ENST00000295924.7,ENST00000473702.1	chr3	156395445:156396403:156411808:156411977:156413653:156413814,	156411809	156411977	156411914	156411917	Frame_Shift_Del	TATT	-	p.341_342del
COAD	TCGA-G4-6588-01	TIPRL	ENST00000367833.2	chr1	168154016:168154116:168160606:168160738:168165784:168165880,	168160607	168160738	168160686	168160686	Frame_Shift_Del	T	-	p.L155fs
COAD	TCGA-AZ-6598-01	TJP3	ENST00000589378.1,ENST00000539908.2,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9,ENST00000586032.1	chr19	3746814:3746874:3747791:3748079:3750135:3750182,	3747792	3748079	3747946	3747947	Frame_Shift_Ins	-	G	p.E859fs
COAD	TCGA-A6-6653-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000591529.1,ENST00000426948.2,ENST00000443826.3	chr19	3008866:3008943:3009539:3009700:3011019:3011158,	3009540	3009700	3009686	3009686	Frame_Shift_Del	G	-	p.L343fs
COAD	TCGA-G4-6320-01	TLE3	ENST00000558201.1,ENST00000558379.1,ENST00000442299.2,ENST00000558939.1,ENST00000557919.1,ENST00000560525.1,ENST00000560589.1,ENST00000539550.1,ENST00000559048.1,ENST00000559929.1,ENST00000560939.1,ENST00000557907.1,ENST00000451782.2,ENST00000561453.1,ENST00000557997.1,ENST00000440567.3,ENST00000317509.8	chr15	70350524:70350630:70351001:70351154:70351748:70351799,	70351002	70351154	70351076	70351077	Frame_Shift_Ins	-	T	p.D282fs
COAD	TCGA-AA-3492-01	TLK2	ENST00000326270.9,ENST00000343388.7,ENST00000542523.1,ENST00000580705.1,ENST00000346027.5,ENST00000582809.1	chr17	60613530:60613698:60631023:60631116:60637376:60637395,60629665:60629758:60631023:60631116:60637376:60637395,	60631024	60631116	60631040	60631040	Frame_Shift_Del	A	-	p.E215fs
COAD	TCGA-AA-3663-01	TM7SF2	ENST00000533766.1	chr11	64880115:64880183:64880282:64880886:64880962:64881005,	64880283	64880886	64880874	64880874	Frame_Shift_Del	G	-	p.P162fs
COAD	TCGA-AA-3663-01	TM7SF2	ENST00000345348.5,ENST00000525385.1,ENST00000530650.1,ENST00000279263.7,ENST00000524986.1	chr11	64880115:64880183:64880691:64880886:64880962:64881005,64880282:64880337:64880691:64880886:64882184:64882280,64880282:64880337:64880691:64880886:64880962:64881005,	64880692	64880886	64880874	64880874	Frame_Shift_Del	G	-	p.P162fs
COAD	TCGA-AA-3663-01	TM7SF2	ENST00000534371.1	chr11	64880282:64880337:64880840:64880886:64880962:64881005,64880115:64880183:64880840:64880886:64880962:64881005,	64880841	64880886	64880874	64880874	Frame_Shift_Del	G	-	p.P162fs
COAD	TCGA-AY-6197-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181814	100181814	Frame_Shift_Del	A	-	p.L142fs
COAD	TCGA-A6-6780-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292809	98292810	Frame_Shift_Ins	-	T	p.W442fs
COAD	TCGA-A6-5665-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292921	98292921	Frame_Shift_Del	A	-	p.V405fs
COAD	TCGA-CM-6171-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292921	98292921	Frame_Shift_Del	A	-	p.V405fs
COAD	TCGA-G4-6309-01	TM9SF4	ENST00000398022.2,ENST00000217315.5	chr20	30738602:30738678:30742905:30742989:30745596:30745751,	30742906	30742989	30742931	30742931	Frame_Shift_Del	T	-	p.V424fs
COAD	TCGA-AD-6895-01	TMC4	ENST00000465790.1	chr19	54666840:54666892:54667384:54667619:54668167:54668335,	54667385	54667619	54667604	54667604	Frame_Shift_Del	G	-	p.Q383fs
COAD	TCGA-AD-6895-01	TMC4	ENST00000376591.4,ENST00000301187.4	chr19	54666840:54666892:54667455:54667619:54668167:54668335,	54667456	54667619	54667604	54667604	Frame_Shift_Del	G	-	p.Q383fs
COAD	TCGA-AM-5820-01	TMC6	ENST00000322914.3,ENST00000593044.1,ENST00000392467.3,ENST00000590602.1	chr17	76115377:76115473:76116733:76116913:76117093:76117245,	76116734	76116913	76116875	76116876	Frame_Shift_Del	CA	-	p.525_525del
COAD	TCGA-G4-6628-01	TMEFF2	ENST00000392314.1	chr2	192814742:192815133:192818404:192818563:192820980:192821102,192813768:192815190:192818404:192818563:192820980:192821104,	192818405	192818563	192818525	192818525	Frame_Shift_Del	T	-	p.K303fs
COAD	TCGA-AA-3492-01	TMEM126B	ENST00000531477.1	chr11	85342188:85342360:85342730:85342852:85345129:85345220,85339673:85339732:85342730:85342852:85345129:85345220,85340175:85340306:85342730:85342852:85345129:85345220,	85342731	85342852	85342821	85342822	Frame_Shift_Ins	-	A	p.E28fs
COAD	TCGA-G4-6309-01	TMEM131	ENST00000186436.5	chr2	98382940:98383065:98388759:98388887:98392305:98392481,	98388760	98388887	98388803	98388804	Frame_Shift_Ins	-	T	p.L1469fs
COAD	TCGA-CM-5861-01	TMEM132A	ENST00000005286.4,ENST00000453848.2,ENST00000534983.1	chr11	60699226:60699356:60699455:60699599:60701013:60701043,	60699456	60699599	60699533	60699534	Frame_Shift_Ins	-	G	p.G430fs
COAD	TCGA-AU-6004-01	TMEM143	ENST00000435956.3	chr19	48863328:48863433:48866547:48866788:48867154:48867178,48848529:48848611:48866547:48866788:48867154:48867178,	48866548	48866788	48866688	48866688	Frame_Shift_Del	G	-	p.R42fs
COAD	TCGA-AZ-4615-01	TMEM218	ENST00000279968.4	chr11	124971096:124971152:124972027:124972247:124972629:124972705,124971151:124971199:124972027:124972247:124972532:124972705,	124972028	124972247	124972065	124972065	Frame_Shift_Del	G	-	p.L25fs
COAD	TCGA-AZ-4615-01	TMEM218	ENST00000527271.1,ENST00000526175.1,ENST00000529583.1	chr11	124971151:124971199:124972027:124972213:124972532:124972705,124971096:124971152:124972027:124972213:124972532:124972705,124971151:124971199:124972027:124972213:124972629:124972705,	124972028	124972213	124972065	124972065	Frame_Shift_Del	G	-	p.L25fs
COAD	TCGA-AZ-4615-01	TMEM218	ENST00000533273.1	chr11	124971151:124971199:124972027:124972705:124980539:124980642,124971151:124971199:124972027:124972705:124981434:124981475,	124972028	124972705	124972065	124972065	Frame_Shift_Del	G	-	p.L25fs
COAD	TCGA-AZ-4615-01	TMEM218	ENST00000527766.1	chr11	124971151:124971199:124972027:124972198:124972629:124972705,	124972028	124972198	124972065	124972065	Frame_Shift_Del	G	-	p.L25fs
COAD	TCGA-AM-5820-01	TMEM245	ENST00000374586.3,ENST00000491854.1,ENST00000413712.2	chr9	111798485:111798660:111800296:111800397:111812562:111812708,	111800297	111800397	111800329	111800330	Frame_Shift_Del	AT	-	p.731_731del
COAD	TCGA-G4-6586-01	TMEM39A	ENST00000319172.5	chr3	119156780:119156950:119165864:119166019:119171293:119171377,	119165865	119166019	119165877	119165877	Frame_Shift_Del	A	-	p.F188fs
COAD	TCGA-G4-6588-01	TMEM39A	ENST00000319172.5,ENST00000468676.1,ENST00000486235.1,ENST00000438581.2,ENST00000497993.1	chr3	119171355:119171377:119176864:119177087:119180808:119180855,	119176865	119177087	119176962	119176962	Frame_Shift_Del	A	-	p.F80fs
COAD	TCGA-G4-6588-01	TMEM39A	ENST00000490099.1	chr3	119171355:119171377:119176864:119177031:119180808:119180855,	119176865	119177031	119176962	119176962	Frame_Shift_Del	A	-	p.F80fs
COAD	TCGA-AY-6197-01	TMEM41B	ENST00000299596.4	chr11	9302200:9302588:9304917:9305140:9308001:9308140,	9304918	9305140	9304991	9304992	Frame_Shift_Ins	-	T	p.L286fs
COAD	TCGA-AZ-6598-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255497	156255498	Frame_Shift_Ins	-	CC	p.M160fs
COAD	TCGA-AZ-6598-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255497	156255498	Frame_Shift_Ins	-	CC	p.M160fs
COAD	TCGA-AZ-6598-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255497	156255498	Frame_Shift_Ins	-	CC	p.M160fs
COAD	TCGA-D5-6930-01	TMEM87A	ENST00000307216.6,ENST00000562946.1	chr15	42560144:42560230:42564260:42564321:42565452:42565513,	42564261	42564321	42564314	42564314	Frame_Shift_Del	T	-	p.N51fs
COAD	TCGA-AU-6004-01	TMEM87B	ENST00000283206.4	chr2	112821738:112821830:112824512:112824644:112832488:112832539,	112824513	112824644	112824523	112824523	Frame_Shift_Del	A	-	p.Q110fs
COAD	TCGA-G4-6302-01	TMOD1	ENST00000395211.2,ENST00000259365.4	chr9	100286422:100286590:100308466:100308623:100315562:100315682,	100308467	100308623	100308615	100308615	Frame_Shift_Del	A	-	p.E90fs
COAD	TCGA-AZ-4615-01	TMOD3	ENST00000308580.7,ENST00000544199.1	chr15	52155034:52155207:52161413:52161570:52179785:52179908,	52161414	52161570	52161562	52161563	Frame_Shift_Del	AA	-	p.92_92del
COAD	TCGA-AD-6889-01	TMPRSS11A	ENST00000334830.7	chr4	68797710:68797778:68810227:68810355:68812167:68812282,	68810228	68810355	68810346	68810346	Frame_Shift_Del	T	-	p.K48fs
COAD	TCGA-AD-6889-01	TMPRSS11A	ENST00000508048.1,ENST00000396188.2	chr4	68797710:68797778:68810236:68810355:68812167:68812282,	68810237	68810355	68810346	68810346	Frame_Shift_Del	T	-	p.K48fs
COAD	TCGA-D5-6927-01	TMTC2	ENST00000321196.3,ENST00000551915.1,ENST00000549919.1,ENST00000548305.1	chr12	83250788:83251359:83289596:83290425:83324209:83324324,	83289597	83290425	83290306	83290306	Frame_Shift_Del	T	-	p.I455fs
COAD	TCGA-G4-6628-01	TNFRSF19	ENST00000382263.3,ENST00000248484.4,ENST00000403372.2	chr13	24242118:24242221:24242830:24243236:24247510:24247638,	24242831	24243236	24243063	24243063	Frame_Shift_Del	G	-	p.G225fs
COAD	TCGA-F4-6570-01	TNFRSF1A	ENST00000162749.2,ENST00000366159.4,ENST00000539372.1,ENST00000440083.2,ENST00000543048.1	chr12	6443010:6443031:6443256:6443410:6450941:6451014,	6443257	6443410	6443371	6443371	Frame_Shift_Del	C	-	p.V27fs
COAD	TCGA-AZ-4615-01	TNIP1	ENST00000315050.7,ENST00000518977.1,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150411847:150411944:150413168:150413360:150414562:150414628,	150413169	150413360	150413227	150413227	Frame_Shift_Del	G	-	p.P574fs
COAD	TCGA-A6-6653-01	TNK1	ENST00000576207.2,ENST00000311668.2,ENST00000570896.1,ENST00000576812.1	chr17	7286568:7286639:7286743:7286935:7287027:7287037,	7286744	7286935	7286821	7286821	Frame_Shift_Del	G	-	p.E104fs
COAD	TCGA-AD-6964-01	TNK2	ENST00000489628.1	chr3	195595500:195595580:195596984:195597249:195599146:195599201,	195596985	195597249	195597006	195597006	Frame_Shift_Del	G	-	p.Q508fs
COAD	TCGA-AD-6964-01	TNK2	ENST00000411741.1,ENST00000478623.1,ENST00000392400.1,ENST00000424563.1,ENST00000428187.1,ENST00000333602.6	chr3	195595500:195595580:195596984:195597076:195599146:195599201,	195596985	195597076	195597006	195597006	Frame_Shift_Del	G	-	p.Q508fs
COAD	TCGA-G4-6586-01	TNK2	ENST00000489628.1	chr3	195595500:195595580:195596984:195597249:195599146:195599201,	195596985	195597249	195597045	195597046	Frame_Shift_Ins	-	G	p.D558fs
COAD	TCGA-G4-6586-01	TNK2	ENST00000411741.1,ENST00000478623.1,ENST00000392400.1,ENST00000424563.1,ENST00000428187.1,ENST00000333602.6	chr3	195595500:195595580:195596984:195597076:195599146:195599201,	195596985	195597076	195597045	195597046	Frame_Shift_Ins	-	G	p.D558fs
COAD	TCGA-AA-3663-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372615	175372616	Frame_Shift_Ins	-	A	p.V213fs
COAD	TCGA-A6-6653-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5396546:5396907:5399028:5399200:5401224:5401353,	5399029	5399200	5399080	5399080	Frame_Shift_Del	C	-	p.R1595fs
COAD	TCGA-A6-5661-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662502	40662502	Frame_Shift_Del	A	-	p.T756fs
COAD	TCGA-AA-3663-01	TNRC6B	ENST00000335727.9	chr22	40661006:40663040:40669428:40669604:40673080:40673155,	40669429	40669604	40669453	40669453	Frame_Shift_Del	G	-	p.W250fs
COAD	TCGA-AU-6004-01	TNS1	ENST00000430930.1,ENST00000446688.1	chr2	218686462:218686661:218696177:218696270:218699813:218699889,	218696178	218696270	218696258	218696258	Frame_Shift_Del	G	-	p.P973fs
COAD	TCGA-AD-5900-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218712955	218712955	Frame_Shift_Del	C	-	p.G637fs
COAD	TCGA-CK-5916-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218713456	218713456	Frame_Shift_Del	C	-	p.G470fs
COAD	TCGA-A6-6780-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32015510:32015789:32016139:32016427:32017046:32017364,	32016140	32016427	32016386	32016386	Frame_Shift_Del	C	-	p.E3265fs
COAD	TCGA-F4-6703-01	TOM1	ENST00000436462.2,ENST00000382034.5,ENST00000404284.2,ENST00000449058.2,ENST00000447733.1,ENST00000411850.1,ENST00000424387.1,ENST00000425375.1	chr22	35730320:35730441:35734705:35734781:35741717:35741777,	35734706	35734781	35734720	35734720	Frame_Shift_Del	C	-	p.A343fs
COAD	TCGA-A6-5661-01	TOP2B	ENST00000413971.1,ENST00000264331.4,ENST00000540199.1,ENST00000435706.2,ENST00000542520.1	chr3	25642590:25642716:25646250:25646361:25647533:25647613,	25646251	25646361	25646313	25646314	Frame_Shift_Ins	-	A	p.S1471fs
COAD	TCGA-AA-3663-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181545	18181545	Frame_Shift_Del	G	-	p.R758fs
COAD	TCGA-AA-3713-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181545	18181545	Frame_Shift_Del	G	-	p.R758fs
COAD	TCGA-D5-6930-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181545	18181545	Frame_Shift_Del	G	-	p.R758fs
COAD	TCGA-A6-5665-01	TOPBP1	ENST00000260810.5	chr3	133368777:133368787:133372188:133372368:133374133:133374330,133371306:133371473:133372188:133372368:133374133:133374330,	133372189	133372368	133372307	133372307	Frame_Shift_Del	A	-	p.D269fs
COAD	TCGA-AA-3713-01	TOPBP1	ENST00000260810.5	chr3	133377859:133377994:133379887:133379978:133380612:133380737,	133379888	133379978	133379900	133379900	Frame_Shift_Del	A	-	p.K25fs
COAD	TCGA-AA-3492-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577036	7577036	Frame_Shift_Del	G	-	p.P301fs
COAD	TCGA-D5-6534-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578240	7578241	Frame_Shift_Del	CA	-	p.71_72del
COAD	TCGA-CM-6679-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578256	7578257	Frame_Shift_Ins	-	C	p.E198fs
COAD	TCGA-A6-5665-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748660	43748661	Frame_Shift_Ins	-	T	p.E711fs
COAD	TCGA-AZ-6598-01	TP53BP2	ENST00000473135.1,ENST00000343537.7	chr1	223998165:223998215:224001941:224002055:224008921:224009069,	224001942	224002055	224001956	224001956	Frame_Shift_Del	G	-	p.P92fs
COAD	TCGA-CM-4743-01	TP73	ENST00000378290.4,ENST00000378295.4,ENST00000354437.4,ENST00000378285.1,ENST00000378288.4	chr1	3645890:3646012:3646563:3646712:3647490:3647629,	3646564	3646712	3646622	3646622	Frame_Shift_Del	G	-	p.H369fs
COAD	TCGA-CM-6674-01	TP73	ENST00000604566.1,ENST00000378280.1	chr1	3645890:3646012:3647490:3647629:3649310:3649643,3645890:3646012:3647490:3647629:3648026:3648120,	3647491	3647629	3647598	3647598	Frame_Shift_Del	C	-	p.T386fs
COAD	TCGA-G4-6297-01	TPCN2	ENST00000294309.3	chr11	68851412:68851484:68852677:68852754:68853138:68853220,	68852678	68852754	68852702	68852703	Frame_Shift_Ins	-	T	p.I596fs
COAD	TCGA-A6-5665-01	TPO	ENST00000497517.2	chr2	1500366:1500537:1507719:1507851:1520654:1520751,1497573:1497811:1507719:1507851:1520654:1520751,	1507720	1507851	1507748	1507748	Frame_Shift_Del	C	-	p.H805fs
COAD	TCGA-A6-6781-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3,ENST00000427771.1	chr3	42240668:42240745:42242309:42242546:42243927:42244244,	42242310	42242546	42242450	42242450	Frame_Shift_Del	C	-	p.T444fs
COAD	TCGA-D5-6540-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3,ENST00000427771.1	chr3	42240668:42240745:42242309:42242546:42243927:42244244,	42242310	42242546	42242450	42242450	Frame_Shift_Del	C	-	p.T444fs
COAD	TCGA-F4-6570-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3,ENST00000427771.1	chr3	42240668:42240745:42242309:42242546:42243927:42244244,	42242310	42242546	42242544	42242544	Frame_Shift_Del	G	-	p.L475fs
COAD	TCGA-D5-6540-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36898166	36898166	Frame_Shift_Del	G	-	p.P972fs
COAD	TCGA-D5-6533-01	TRAP1	ENST00000574941.1,ENST00000576106.1,ENST00000246957.5	chr16	3739112:3739138:3740827:3740986:3767421:3767513,	3740828	3740986	3740841	3740842	Frame_Shift_Del	TG	-	p.78_79del
COAD	TCGA-AD-6889-01	TRAPPC10	ENST00000291574.4,ENST00000422875.1	chr21	45497573:45497665:45499444:45499585:45499895:45500008,	45499445	45499585	45499494	45499494	Frame_Shift_Del	A	-	p.L506fs
COAD	TCGA-AA-3492-01	TRAPPC10	ENST00000486746.1,ENST00000459741.1,ENST00000291574.4,ENST00000465905.1,ENST00000422875.1,ENST00000485621.1	chr21	45511803:45511930:45513943:45514114:45518237:45518305,	45513944	45514114	45514004	45514004	Frame_Shift_Del	C	-	p.P1019fs
COAD	TCGA-AY-6197-01	TRAPPC6A	ENST00000588062.1,ENST00000585934.1,ENST00000006275.4,ENST00000592647.1	chr19	45667173:45667267:45667421:45667505:45668110:45668228,	45667422	45667505	45667472	45667472	Frame_Shift_Del	G	-	p.L116fs
COAD	TCGA-A6-6142-01	TRAPPC8	ENST00000578886.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29429528:29429702:29432408:29432467:29432557:29432626,	29432409	29432467	29432425	29432429	Frame_Shift_Del	ATGAT	-	p.1181_1182del
COAD	TCGA-CM-4743-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717765	5717765	Frame_Shift_Del	A	-	p.G101fs
COAD	TCGA-AD-5900-01	TRIM37	ENST00000585287.1	chr17	57076741:57076820:57078958:57079102:57089688:57089768,	57078959	57079102	57078967	57078967	Frame_Shift_Del	G	-	p.P935fs
COAD	TCGA-AD-5900-01	TRIM37	ENST00000262294.7,ENST00000393065.2,ENST00000393066.3	chr17	57076741:57076820:57078958:57079075:57089688:57089768,	57078959	57079075	57078967	57078967	Frame_Shift_Del	G	-	p.P935fs
COAD	TCGA-AD-6889-01	TRIM66	ENST00000530502.1	chr11	8641992:8642119:8642578:8642784:8643191:8643366,	8642579	8642784	8642705	8642705	Frame_Shift_Del	G	-	p.P964fs
COAD	TCGA-AD-6889-01	TRIM66	ENST00000299550.6,ENST00000402157.2,ENST00000481014.2	chr11	8641992:8642119:8642578:8642868:8643191:8643366,	8642579	8642868	8642705	8642705	Frame_Shift_Del	G	-	p.P964fs
COAD	TCGA-AZ-6598-01	TRIO	ENST00000537187.1,ENST00000502816.1,ENST00000344204.4,ENST00000512070.2	chr5	14143945:14143991:14270933:14271008:14280430:14280545,	14270934	14271008	14270941	14270941	Frame_Shift_Del	A	-	p.R55fs
COAD	TCGA-AM-5820-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487780	14487781	Frame_Shift_Ins	-	C	p.H2348fs
COAD	TCGA-AM-5820-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487780	14487781	Frame_Shift_Ins	-	C	p.H2348fs
COAD	TCGA-A6-5665-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
COAD	TCGA-A6-5665-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
COAD	TCGA-AZ-6598-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
COAD	TCGA-AZ-6598-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
COAD	TCGA-G4-6588-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
COAD	TCGA-G4-6588-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
COAD	TCGA-CK-5913-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472698	92472698	Frame_Shift_Del	T	-	p.K541fs
COAD	TCGA-G4-6628-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472698	92472698	Frame_Shift_Del	T	-	p.K541fs
COAD	TCGA-AA-3492-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661315	230661315	Frame_Shift_Del	A	-	p.S1195fs
COAD	TCGA-AD-6889-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661315	230661315	Frame_Shift_Del	A	-	p.S1195fs
COAD	TCGA-G4-6586-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661315	230661315	Frame_Shift_Del	A	-	p.S1195fs
COAD	TCGA-G4-6588-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661315	230661315	Frame_Shift_Del	A	-	p.S1195fs
COAD	TCGA-AU-6004-01	TRIP12	ENST00000487178.1,ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230668286:230668405:230668714:230668943:230670445:230670518,	230668715	230668943	230668729	230668730	Frame_Shift_Ins	-	T	p.N880fs
COAD	TCGA-A6-5665-01	TRIP4	ENST00000561265.1,ENST00000558820.1,ENST00000559833.1,ENST00000261884.3,ENST00000557834.1,ENST00000560567.1,ENST00000559565.1	chr15	64686205:64686314:64687596:64687730:64689804:64689934,	64687597	64687730	64687662	64687662	Frame_Shift_Del	C	-	p.R112fs
COAD	TCGA-A6-6780-01	TRIP6	ENST00000437505.1	chr7	100465015:100465228:100465729:100465855:100466116:100466488,	100465730	100465855	100465746	100465746	Frame_Shift_Del	G	-	p.R85fs
COAD	TCGA-G4-6628-01	TRIP6	ENST00000437505.1	chr7	100465015:100465228:100465729:100465855:100466116:100466488,	100465730	100465855	100465746	100465746	Frame_Shift_Del	G	-	p.R85fs
COAD	TCGA-AD-6895-01	TRIP6	ENST00000417475.1,ENST00000437505.1,ENST00000200457.4,ENST00000476870.1	chr7	100465742:100465855:100466116:100466488:100467991:100468085,	100466117	100466488	100466483	100466483	Frame_Shift_Del	C	-	p.G243fs
COAD	TCGA-D5-6931-01	TRMT2A	ENST00000252136.7,ENST00000492988.1,ENST00000404751.3,ENST00000471040.1,ENST00000494820.1,ENST00000403707.3	chr22	20101008:20101030:20101208:20101331:20102096:20102204,	20101209	20101331	20101269	20101270	Frame_Shift_Del	CG	-	p.432_433del
COAD	TCGA-D5-6930-01	TRNT1	ENST00000280591.6,ENST00000434583.1,ENST00000251607.6	chr3	3178943:3179137:3182193:3182332:3186267:3186394,	3182194	3182332	3182322	3182323	Frame_Shift_Del	TA	-	p.157_157del
COAD	TCGA-A6-6780-01	TRPM4	ENST00000598502.1	chr19	49661448:49661516:49669297:49669472:49671516:49671594,	49669298	49669472	49669447	49669448	Frame_Shift_Ins	-	G	p.T81fs
COAD	TCGA-CM-4746-01	TRPM4	ENST00000427978.2,ENST00000596338.1,ENST00000252826.5	chr19	49669297:49669472:49671173:49671354:49671516:49671594,	49671174	49671354	49671272	49671272	Frame_Shift_Del	G	-	p.L122fs
COAD	TCGA-AZ-6598-01	TRPV4	ENST00000537083.1,ENST00000392719.2,ENST00000538125.1,ENST00000541794.1,ENST00000544971.1,ENST00000346520.2,ENST00000536838.1,ENST00000261740.2	chr12	110240795:110240948:110246100:110246273:110252215:110252420,	110246101	110246273	110246228	110246228	Frame_Shift_Del	G	-	p.I145fs
COAD	TCGA-AZ-4615-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135782687:135782757:135785957:135786079:135786388:135786500,	135785958	135786079	135785964	135785964	Frame_Shift_Del	G	-	p.R419fs
COAD	TCGA-G4-6586-01	TSC22D4	ENST00000393991.1	chr7	100071896:100072063:100074899:100075082:100076416:100076792,	100074900	100075082	100075075	100075075	Frame_Shift_Del	G	-	p.P196fs
COAD	TCGA-G4-6586-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075075	100075075	Frame_Shift_Del	G	-	p.P196fs
COAD	TCGA-AA-3492-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075543	100075543	Frame_Shift_Del	G	-	p.P40fs
COAD	TCGA-AA-3713-01	TSEN34	ENST00000396383.1,ENST00000396388.2,ENST00000302937.4,ENST00000429671.2,ENST00000496583.1	chr19	54695571:54695815:54695966:54696224:54697029:54697173,	54695967	54696224	54696006	54696006	Frame_Shift_Del	C	-	p.A176fs
COAD	TCGA-CM-6162-01	TSSK4	ENST00000287913.6,ENST00000556621.1	chr14	24675714:24675929:24676351:24676715:24677169:24677454,	24676352	24676715	24676644	24676644	Frame_Shift_Del	A	-	p.L244fs
COAD	TCGA-A6-5661-01	TTC28	ENST00000469670.1,ENST00000431039.1,ENST00000397906.2	chr22	28388599:28388651:28389274:28389506:28392122:28392227,	28389275	28389506	28389367	28389367	Frame_Shift_Del	G	-	p.P1795fs
COAD	TCGA-AZ-4615-01	TTC28	ENST00000469670.1,ENST00000431039.1,ENST00000397906.2	chr22	28388599:28388651:28389274:28389506:28392122:28392227,	28389275	28389506	28389367	28389367	Frame_Shift_Del	G	-	p.P1795fs
COAD	TCGA-AA-3713-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555142	38555143	Frame_Shift_Ins	-	A	p.E1562fs
COAD	TCGA-AA-3663-01	TTC37	ENST00000513823.1,ENST00000358746.2	chr5	94877558:94877610:94878887:94879031:94882764:94882855,	94878888	94879031	94878927	94878927	Frame_Shift_Del	T	-	p.A66fs
COAD	TCGA-D5-6931-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604548	179604549	Frame_Shift_Ins	-	T	p.M4154fs
COAD	TCGA-G4-6588-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606235	179606235	Frame_Shift_Del	T	-	p.I3592fs
COAD	TCGA-A6-5665-01	TTYH2	ENST00000529107.1,ENST00000269346.4,ENST00000578825.1	chr17	72227026:72227138:72233432:72233653:72239512:72239608,	72233433	72233653	72233586	72233586	Frame_Shift_Del	G	-	p.P189fs
COAD	TCGA-AZ-4615-01	TTYH2	ENST00000529107.1,ENST00000269346.4,ENST00000578825.1	chr17	72227026:72227138:72233432:72233653:72239512:72239608,	72233433	72233653	72233586	72233586	Frame_Shift_Del	G	-	p.P189fs
COAD	TCGA-CM-6162-01	TUBE1	ENST00000604743.1,ENST00000368662.5,ENST00000604814.1	chr6	112395912:112396053:112397139:112397315:112397524:112397677,	112397140	112397315	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
COAD	TCGA-CM-6162-01	TUBE1	ENST00000605457.1	chr6	112395912:112396053:112397139:112397374:112397524:112397677,	112397140	112397374	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
COAD	TCGA-G4-6320-01	TUBE1	ENST00000604743.1,ENST00000368662.5,ENST00000604814.1	chr6	112395912:112396053:112397139:112397315:112397524:112397677,	112397140	112397315	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
COAD	TCGA-G4-6320-01	TUBE1	ENST00000605457.1	chr6	112395912:112396053:112397139:112397374:112397524:112397677,	112397140	112397374	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
COAD	TCGA-CM-4743-01	TUBG2	ENST00000588870.1,ENST00000251412.7	chr17	40817493:40817580:40817695:40817845:40818104:40818257,	40817696	40817845	40817737	40817737	Frame_Shift_Del	C	-	p.Y245fs
COAD	TCGA-G4-6588-01	TUBGCP6	ENST00000439308.2	chr22	50658385:50658444:50658620:50660303:50660456:50660531,	50658621	50660303	50659271	50659271	Frame_Shift_Del	C	-	p.E1173fs
COAD	TCGA-G4-6588-01	TUBGCP6	ENST00000248846.5	chr22	50658385:50658444:50658679:50660303:50660456:50660531,	50658680	50660303	50659271	50659271	Frame_Shift_Del	C	-	p.E1173fs
COAD	TCGA-AD-6895-01	TUBGCP6	ENST00000498611.1	chr22	50658385:50658444:50659703:50660303:50660456:50660531,	50659704	50660303	50660148	50660148	Frame_Shift_Del	C	-	p.L881fs
COAD	TCGA-AD-6895-01	TUBGCP6	ENST00000439308.2	chr22	50658385:50658444:50658620:50660303:50660456:50660531,	50658621	50660303	50660148	50660148	Frame_Shift_Del	C	-	p.L881fs
COAD	TCGA-AD-6895-01	TUBGCP6	ENST00000248846.5	chr22	50658385:50658444:50658679:50660303:50660456:50660531,	50658680	50660303	50660148	50660148	Frame_Shift_Del	C	-	p.L881fs
COAD	TCGA-AY-6386-01	TUFT1	ENST00000353024.3,ENST00000538902.1,ENST00000392712.3,ENST00000368848.2,ENST00000368849.3,ENST00000490156.1	chr1	151538638:151538704:151542132:151542246:151546745:151546874,	151542133	151542246	151542174	151542183	Frame_Shift_Del	GACGGTGCAG	-	p.149_152del
COAD	TCGA-AD-6889-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923159	158923160	Frame_Shift_Ins	-	C	p.A822fs
COAD	TCGA-A6-6780-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923160	158923160	Frame_Shift_Del	C	-	p.A822fs
COAD	TCGA-A6-5665-01	TXNDC17	ENST00000577146.1,ENST00000573792.1,ENST00000570330.1,ENST00000250101.5,ENST00000571029.1,ENST00000576020.1	chr17	6545072:6545154:6545568:6545644:6546270:6546387,	6545569	6545644	6545595	6545596	Frame_Shift_Ins	-	A	p.R85fs
COAD	TCGA-A6-6653-01	U2SURP	ENST00000488497.3,ENST00000493598.2,ENST00000488587.1,ENST00000397933.2,ENST00000461591.1,ENST00000470400.1,ENST00000473835.2,ENST00000463563.2	chr3	142735733:142735817:142738810:142738878:142739440:142739535,	142738811	142738878	142738828	142738828	Frame_Shift_Del	G	-	p.E196fs
COAD	TCGA-A6-6653-01	U2SURP	ENST00000488497.3,ENST00000493598.2,ENST00000488587.1,ENST00000397933.2,ENST00000461591.1,ENST00000470400.1,ENST00000473835.2,ENST00000463563.2	chr3	142735733:142735817:142738810:142738878:142739440:142739535,	142738811	142738878	142738832	142738832	Frame_Shift_Del	G	-	p.K197fs
COAD	TCGA-CM-6674-01	U2SURP	ENST00000488497.3,ENST00000480029.1,ENST00000493598.2,ENST00000467348.1,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142761963:142762118:142769780:142769891:142772517:142772624,	142769781	142769891	142769829	142769829	Frame_Shift_Del	A	-	p.P864fs
COAD	TCGA-A6-6653-01	U2SURP	ENST00000488497.3,ENST00000493598.2,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142772517:142772636:142773784:142773961:142775153:142775342,	142773785	142773961	142773805	142773805	Frame_Shift_Del	C	-	p.S932fs
COAD	TCGA-AU-6004-01	UBE2O	ENST00000319380.7,ENST00000587127.1	chr17	74387836:74387894:74387990:74388194:74391805:74391942,	74387991	74388194	74388089	74388089	Frame_Shift_Del	G	-	p.H1018fs
COAD	TCGA-AM-5820-01	UBE2Q1	ENST00000467683.1,ENST00000292211.4	chr1	154522884:154522945:154523413:154523480:154523872:154523968,	154523414	154523480	154523415	154523416	Frame_Shift_Ins	-	T	p.N412fs
COAD	TCGA-D5-5537-01	UBE2Q1	ENST00000467683.1,ENST00000292211.4	chr1	154522884:154522945:154523413:154523480:154523872:154523968,	154523414	154523480	154523415	154523416	Frame_Shift_Ins	-	T	p.N412fs
COAD	TCGA-AA-3663-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10228193:10228328:10231195:10231387:10238701:10238876,	10231196	10231387	10231210	10231211	Frame_Shift_Ins	-	T	p.R1116fs
COAD	TCGA-AZ-6598-01	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103273373:103273487:103274142:103274298:103276701:103276786,	103274143	103274298	103274272	103274272	Frame_Shift_Del	A	-	p.D2572fs
COAD	TCGA-CK-5916-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103289199:103289420:103291053:103291167:103291263:103291394,	103291054	103291167	103291141	103291141	Frame_Shift_Del	A	-	p.G2068fs
COAD	TCGA-AD-6889-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196089164:196089558:196094898:196095026:196096291:196096382,	196094899	196095026	196094916	196094917	Frame_Shift_Ins	-	G	p.K273fs
COAD	TCGA-A6-5665-01	UGDH	ENST00000501493.2,ENST00000316423.6,ENST00000506179.1,ENST00000507089.1	chr4	39506036:39506128:39506856:39506990:39507237:39507368,	39506857	39506990	39506918	39506918	Frame_Shift_Del	T	-	p.V371fs
COAD	TCGA-AY-6197-01	ULK1	ENST00000541761.1,ENST00000321867.4	chr12	132401497:132401607:132401955:132402099:132403041:132403226,	132401956	132402099	132402066	132402066	Frame_Shift_Del	C	-	p.T764fs
COAD	TCGA-A6-6780-01	ULK1	ENST00000540647.1,ENST00000321867.4	chr12	132403041:132403226:132403756:132403929:132404016:132404135,	132403757	132403929	132403858	132403858	Frame_Shift_Del	G	-	p.A871fs
COAD	TCGA-AA-3492-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729452	19729453	Frame_Shift_Ins	-	T	p.S279fs
COAD	TCGA-CM-5861-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729452	19729453	Frame_Shift_Ins	-	T	p.S279fs
COAD	TCGA-CM-5863-01	ULK4	ENST00000301831.4,ENST00000460406.1	chr3	41841624:41841785:41860914:41860998:41877355:41877463,	41860915	41860998	41860985	41860985	Frame_Shift_Del	T	-	p.K593fs
COAD	TCGA-DM-A1D6-01	ULK4	ENST00000301831.4,ENST00000460406.1	chr3	41841624:41841785:41860914:41860998:41877355:41877463,	41860915	41860998	41860985	41860985	Frame_Shift_Del	T	-	p.K593fs
COAD	TCGA-G4-6628-01	ULK4	ENST00000301831.4,ENST00000460406.1	chr3	41841624:41841785:41860914:41860998:41877355:41877463,	41860915	41860998	41860985	41860985	Frame_Shift_Del	T	-	p.K593fs
COAD	TCGA-AD-6889-01	UNC13C	ENST00000545554.1,ENST00000260323.11,ENST00000561210.1,ENST00000537900.1	chr15	54624240:54624309:54625964:54626054:54630558:54630687,	54625965	54626054	54626040	54626040	Frame_Shift_Del	T	-	p.T1523fs
COAD	TCGA-G4-6309-01	UNC13C	ENST00000545554.1,ENST00000260323.11,ENST00000561210.1,ENST00000537900.1	chr15	54624240:54624309:54625964:54626054:54630558:54630687,	54625965	54626054	54626040	54626040	Frame_Shift_Del	T	-	p.T1523fs
COAD	TCGA-AM-5820-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12071011	12071011	Frame_Shift_Del	T	-	p.N293fs
COAD	TCGA-CK-5913-01	UPF3A	ENST00000375299.3	chr13	115047495:115047602:115048311:115048418:115056963:115057019,115047495:115047602:115048311:115048418:115051993:115052104,115047495:115047602:115048311:115048418:115051776:115051875,	115048312	115048418	115048386	115048387	Frame_Shift_Ins	-	T	p.R130fs
COAD	TCGA-AA-3713-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057212	Frame_Shift_Del	AA	-	p.263_264del
COAD	TCGA-AA-3492-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057218	115057219	Frame_Shift_Ins	-	G	p.K266fs
COAD	TCGA-AD-6889-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057218	115057219	Frame_Shift_Ins	-	G	p.K266fs
COAD	TCGA-A6-5665-01	UPK2	ENST00000534788.1	chr11	118827679:118827724:118827917:118828024:118828307:118828378,	118827918	118828024	118827946	118827946	Frame_Shift_Del	G	-	p.P79fs
COAD	TCGA-A6-5665-01	UPK2	ENST00000264031.2	chr11	118827679:118827724:118827917:118828056:118828307:118828378,	118827918	118828056	118827946	118827946	Frame_Shift_Del	G	-	p.P79fs
COAD	TCGA-G4-6628-01	UPRT	ENST00000462237.1,ENST00000526850.1,ENST00000530743.1,ENST00000373383.4,ENST00000474175.1,ENST00000373379.1	chrX	74517325:74517388:74519569:74519731:74520701:74520800,	74519570	74519731	74519682	74519682	Frame_Shift_Del	C	-	p.F225fs
COAD	TCGA-A6-5661-01	UROD	ENST00000472254.1,ENST00000494399.1,ENST00000246337.4	chr1	45480407:45480508:45480611:45480678:45481008:45481064,	45480612	45480678	45480657	45480658	Frame_Shift_Ins	-	A	p.P307fs
COAD	TCGA-A6-5665-01	USE1	ENST00000445667.2,ENST00000600970.1,ENST00000593597.1,ENST00000263897.5,ENST00000594724.1	chr19	17329180:17329200:17330021:17330196:17330439:17330449,	17330022	17330196	17330108	17330108	Frame_Shift_Del	A	-	p.E170fs
COAD	TCGA-AA-3492-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408080	179408081	Frame_Shift_Ins	-	T	p.I116fs
COAD	TCGA-D5-6930-01	USP15	ENST00000280377.5,ENST00000393654.3,ENST00000353364.3	chr12	62775270:62775444:62777620:62777779:62777858:62778083,	62777621	62777779	62777731	62777732	Frame_Shift_Ins	-	A	p.R371fs
COAD	TCGA-A6-6781-01	USP34	ENST00000463046.1,ENST00000411912.1,ENST00000436269.1,ENST00000398571.2	chr2	61417405:61417549:61417652:61417793:61420035:61420115,	61417653	61417793	61417699	61417699	Frame_Shift_Del	A	-	p.L3228fs
COAD	TCGA-AD-6889-01	USP34	ENST00000398571.2	chr2	61520598:61520685:61522083:61522167:61522302:61522425,	61522084	61522167	61522099	61522100	Frame_Shift_Ins	-	T	p.N1482fs
COAD	TCGA-A6-6780-01	USP34	ENST00000398571.2	chr2	61622317:61622368:61632842:61633263:61647880:61647968,	61632843	61633263	61633020	61633020	Frame_Shift_Del	T	-	p.S126fs
COAD	TCGA-G4-6588-01	USP36	ENST00000588086.1,ENST00000312010.6,ENST00000542802.3,ENST00000589225.1	chr17	76798542:76798617:76799466:76800060:76802237:76802368,	76799467	76800060	76799861	76799861	Frame_Shift_Del	G	-	p.Q806fs
COAD	TCGA-AD-6895-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135593	144135593	Frame_Shift_Del	A	-	p.A821fs
COAD	TCGA-G4-6309-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99893879	99893879	Frame_Shift_Del	A	-	p.L590fs
COAD	TCGA-AA-3663-01	USP45	ENST00000500704.2,ENST00000507717.1,ENST00000327681.6,ENST00000369233.2,ENST00000506871.1	chr6	99924018:99924106:99930628:99930759:99936075:99936171,	99930629	99930759	99930673	99930673	Frame_Shift_Del	T	-	p.G268fs
COAD	TCGA-AD-6889-01	USP54	ENST00000498143.1,ENST00000339859.4,ENST00000394811.2,ENST00000408019.1,ENST00000428547.1	chr10	75277271:75277505:75280665:75280785:75283340:75283508,75279554:75279750:75280665:75280785:75283340:75283432,	75280666	75280785	75280699	75280700	Frame_Shift_Del	CA	-	p.817_817del
COAD	TCGA-AD-6889-01	USP8	ENST00000433963.1,ENST00000559329.1,ENST00000561330.1,ENST00000560730.1,ENST00000558091.1,ENST00000396444.3,ENST00000560297.1,ENST00000307179.4	chr15	50731239:50731374:50733545:50733690:50751196:50751267,50731239:50731374:50733545:50733690:50741596:50741637,	50733546	50733690	50733660	50733661	Frame_Shift_Ins	-	A	p.I73fs
COAD	TCGA-CK-5912-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41084301:41084390:41088505:41088662:41088819:41089032,	41088506	41088662	41088571	41088572	Frame_Shift_Ins	-	T	p.S2376fs
COAD	TCGA-AZ-4315-01	UTP20	ENST00000551825.1,ENST00000261637.4	chr12	101680098:101680287:101682737:101682819:101683914:101684052,	101682738	101682819	101682762	101682763	Frame_Shift_Ins	-	A	p.H180fs
COAD	TCGA-AA-3492-01	UTRN	ENST00000367545.3	chr6	144758700:144758882:144759880:144760031:144761487:144761607,	144759881	144760031	144759979	144759980	Frame_Shift_Ins	-	CC	p.C447fs
COAD	TCGA-A6-5665-01	UVSSA	ENST00000511216.1,ENST00000389851.4,ENST00000507531.1	chr4	1348904:1349033:1360107:1360219:1369151:1369296,	1360108	1360219	1360194	1360194	Frame_Shift_Del	C	-	p.I421fs
COAD	TCGA-G4-6586-01	UXS1	ENST00000497604.1,ENST00000409032.1,ENST00000283148.7,ENST00000409501.3,ENST00000540130.1	chr2	106710059:106710613:106713173:106713277:106715171:106715229,	106713174	106713277	106713181	106713182	Frame_Shift_Ins	-	C	p.E380fs
COAD	TCGA-AZ-6598-01	VAMP4	ENST00000474047.1,ENST00000236192.7,ENST00000482519.1	chr1	171688310:171688361:171697663:171697710:171707488:171707603,	171697664	171697710	171697665	171697666	Frame_Shift_Ins	-	A	p.L38fs
COAD	TCGA-G4-6588-01	VCAM1	ENST00000347652.2	chr1	101190179:101190446:101196753:101197074:101197973:101198240,	101196754	101197074	101196902	101196903	Frame_Shift_Ins	-	T	p.E389fs
COAD	TCGA-D5-6928-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316639	133316639	Frame_Shift_Del	T	-	p.N111fs
COAD	TCGA-G4-6628-01	VDAC2	ENST00000332211.6,ENST00000447677.1,ENST00000313132.4,ENST00000413289.1,ENST00000298468.5,ENST00000344036.4,ENST00000481876.1,ENST00000543351.1	chr10	76971987:76972056:76973778:76973828:76977645:76977749,76971987:76972056:76973778:76973828:76978820:76978954,	76973779	76973828	76973810	76973811	Frame_Shift_Del	AA	-	p.59_59del
COAD	TCGA-G4-6628-01	VEGFB	ENST00000309422.2	chr11	64003725:64003799:64004658:64004694:64004992:64005127,64003725:64003799:64004658:64004694:64004891:64005127,	64004659	64004694	64004663	64004664	Frame_Shift_Del	AA	-	p.126_127del
COAD	TCGA-F4-6570-01	VEZT	ENST00000550803.1,ENST00000547484.1	chr12	95645742:95645847:95650925:95651015:95656681:95656835,95645742:95645847:95650925:95651015:95652020:95652058,95650325:95650398:95650925:95651015:95656681:95656835,95650325:95650398:95650925:95651015:95652020:95652058,	95650926	95651015	95650969	95650969	Frame_Shift_Del	T	-	p.I71fs
COAD	TCGA-F4-6570-01	VEZT	ENST00000549624.1	chr12	95645742:95645847:95650929:95651015:95656681:95656835,95650325:95650398:95650929:95651015:95656681:95656835,	95650930	95651015	95650969	95650969	Frame_Shift_Del	T	-	p.I71fs
COAD	TCGA-AY-6197-01	VPS13B	ENST00000355155.1,ENST00000358544.2,ENST00000441350.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100025987:100026163:100050650:100050794:100108539:100108660,	100050651	100050794	100050671	100050671	Frame_Shift_Del	T	-	p.T56fs
COAD	TCGA-F4-6570-01	VPS13D	ENST00000356315.4,ENST00000011700.6,ENST00000358136.3	chr1	12353580:12353761:12359258:12359441:12364562:12364785,	12359259	12359441	12359388	12359388	Frame_Shift_Del	A	-	p.V2054fs
COAD	TCGA-DM-A28C-01	VPS36	ENST00000378060.4	chr13	53001321:53001354:53007796:53007883:53008927:53009017,	53007797	53007883	53007825	53007826	Frame_Shift_Ins	-	T	p.R167fs
COAD	TCGA-AZ-6598-01	VPS41	ENST00000395969.2,ENST00000310301.4	chr7	38807136:38807198:38810797:38810854:38812121:38812237,	38810798	38810854	38810819	38810820	Frame_Shift_Ins	-	T	p.N363fs
COAD	TCGA-AA-3713-01	VPS41	ENST00000395969.2,ENST00000310301.4	chr7	38807136:38807198:38810797:38810854:38812121:38812237,	38810798	38810854	38810820	38810820	Frame_Shift_Del	T	-	p.N363fs
COAD	TCGA-AD-6889-01	VPS41	ENST00000466017.1,ENST00000395969.2,ENST00000310301.4	chr7	38813757:38813844:38816278:38816376:38829400:38829467,	38816279	38816376	38816280	38816281	Frame_Shift_Ins	-	T	p.T269fs
COAD	TCGA-CM-5861-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000478934.1,ENST00000445902.2	chr6	33231855:33231880:33232150:33232274:33232558:33232677,	33232151	33232274	33232172	33232172	Frame_Shift_Del	C	-	p.L502fs
COAD	TCGA-AD-6964-01	VSIG2	ENST00000326621.5,ENST00000403470.1	chr11	124619603:124619762:124620609:124620817:124621318:124621476,	124620610	124620817	124620740	124620740	Frame_Shift_Del	G	-	p.T100fs
COAD	TCGA-F4-6856-01	VSTM2L	ENST00000448944.1	chr20	36531543:36531873:36560036:36560206:36572382:36572538,	36560037	36560206	36560193	36560193	Frame_Shift_Del	G	-	p.W93fs
COAD	TCGA-F4-6570-01	VWA7	ENST00000447450.1,ENST00000467576.1,ENST00000375686.3	chr6	31743940:31744019:31744322:31744571:31744885:31745049,	31744323	31744571	31744357	31744357	Frame_Shift_Del	G	-	p.P67fs
COAD	TCGA-AD-6895-01	VWCE	ENST00000335613.5,ENST00000538579.1	chr11	61058735:61058825:61058953:61059048:61062399:61062498,	61058954	61059048	61059032	61059032	Frame_Shift_Del	G	-	p.H43fs
COAD	TCGA-AA-3663-01	WAS	ENST00000376701.4	chrX	48546688:48546842:48547048:48547455:48547708:48547823,	48547049	48547455	48547171	48547171	Frame_Shift_Del	C	-	p.P351fs
COAD	TCGA-D5-6930-01	WASF3	ENST00000335327.5	chr13	27246008:27246126:27250685:27250861:27255190:27255457,	27250686	27250861	27250861	27250862	Frame_Shift_Ins	-	GT	p.R239fs
COAD	TCGA-CM-5861-01	WDFY4	ENST00000325239.5,ENST00000413659.2	chr10	49982502:49982717:49983756:49983851:49984794:49984956,	49983757	49983851	49983820	49983821	Frame_Shift_Ins	-	CA	p.S944fs
COAD	TCGA-F4-6570-01	WDHD1	ENST00000420358.2,ENST00000360586.3,ENST00000421192.1	chr14	55455745:55455930:55457930:55458118:55462320:55462531,	55457931	55458118	55457987	55457987	Frame_Shift_Del	G	-	p.R429fs
COAD	TCGA-AA-3492-01	WDR13	ENST00000471334.1,ENST00000376729.5,ENST00000218056.5	chrX	48456345:48456425:48457104:48457345:48457740:48457850,	48457105	48457345	48457201	48457201	Frame_Shift_Del	C	-	p.H46fs
COAD	TCGA-AA-3492-01	WDR13	ENST00000498631.1,ENST00000497756.2,ENST00000486125.1	chrX	48456345:48456425:48457138:48457345:48457740:48457850,	48457139	48457345	48457201	48457201	Frame_Shift_Del	C	-	p.H46fs
COAD	TCGA-AZ-4615-01	WDR19	ENST00000502389.1,ENST00000503697.1,ENST00000288634.7,ENST00000506869.1,ENST00000506503.1	chr4	39184167:39184183:39187345:39187437:39188158:39188224,	39187346	39187437	39187403	39187404	Frame_Shift_Ins	-	A	p.Q22fs
COAD	TCGA-A6-6780-01	WDR26	ENST00000295024.6,ENST00000414423.2,ENST00000480676.2	chr1	224586590:224586736:224588651:224588771:224592131:224592272,	224588652	224588771	224588749	224588750	Frame_Shift_Ins	-	T	p.M441fs
COAD	TCGA-G4-6588-01	WDR4	ENST00000476326.1,ENST00000330317.2,ENST00000479429.1,ENST00000492742.1,ENST00000398208.2	chr21	44274671:44274736:44275791:44275890:44279771:44279832,	44275792	44275890	44275794	44275794	Frame_Shift_Del	G	-	p.Q96fs
COAD	TCGA-AA-3663-01	WDR49	ENST00000453925.2,ENST00000472600.1,ENST00000308378.3,ENST00000476376.1	chr3	167217940:167218087:167223094:167223204:167240102:167240173,	167223095	167223204	167223102	167223102	Frame_Shift_Del	T	-	p.S608fs
COAD	TCGA-G4-6628-01	WDR59	ENST00000536050.1,ENST00000262144.6	chr16	74972148:74972164:74976635:74976724:74982416:74982454,	74976636	74976724	74976691	74976691	Frame_Shift_Del	T	-	p.N160fs
COAD	TCGA-D5-6540-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49051382	49051382	Frame_Shift_Del	G	-	p.A835fs
COAD	TCGA-D5-6540-01	WDR6	ENST00000415265.2	chr3	49044835:49044964:49050723:49051549:49051642:49051726,	49050724	49051549	49051382	49051382	Frame_Shift_Del	G	-	p.A835fs
COAD	TCGA-D5-6540-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49051382	49051382	Frame_Shift_Del	G	-	p.A835fs
COAD	TCGA-CM-6162-01	WDR66	ENST00000540779.1,ENST00000397454.2,ENST00000288912.4	chr12	122359313:122359589:122361527:122361896:122369651:122369792,	122361528	122361896	122361765	122361766	Frame_Shift_Del	AG	-	p.205_206del
COAD	TCGA-CM-6171-01	WDR70	ENST00000511906.1,ENST00000510699.1,ENST00000265107.4	chr5	37516615:37516692:37605165:37605340:37697756:37697856,	37605166	37605340	37605238	37605239	Frame_Shift_Ins	-	A	p.G330fs
COAD	TCGA-D5-6930-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54363472:54363693:54385194:54385390:54398613:54398828,	54385195	54385390	54385264	54385264	Frame_Shift_Del	A	-	p.E549fs
COAD	TCGA-CA-6717-01	WDR78	ENST00000431318.1,ENST00000371022.3,ENST00000371023.3,ENST00000371026.3	chr1	67337052:67337192:67340463:67340620:67356836:67356949,	67340464	67340620	67340576	67340577	Frame_Shift_Ins	-	T	p.E230fs
COAD	TCGA-D5-6540-01	WDR90	ENST00000549091.1,ENST00000548844.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1,ENST00000552943.1	chr16	708895:709011:709085:709126:709244:709376,	709086	709126	709106	709106	Frame_Shift_Del	C	-	p.A1011fs
COAD	TCGA-D5-5537-01	WDSUB1	ENST00000409990.3,ENST00000409124.1,ENST00000392796.3,ENST00000359774.4	chr2	160116320:160116354:160128212:160128306:160132056:160132149,	160128213	160128306	160128221	160128222	Frame_Shift_Ins	-	A	p.L254fs
COAD	TCGA-AD-6889-01	WIPF2	ENST00000582781.1,ENST00000394103.3,ENST00000323571.4	chr17	38375608:38375744:38412642:38412774:38416786:38416879,	38412643	38412774	38412736	38412736	Frame_Shift_Del	C	-	p.P8fs
COAD	TCGA-CM-6171-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134232957	134232957	Frame_Shift_Del	C	-	p.R161fs
COAD	TCGA-AU-6004-01	WISP1	ENST00000377863.2	chr8	134225106:134225386:134237632:134237826:134239653:134239959,134232823:134233084:134237632:134237826:134239653:134239959,134203379:134203456:134237632:134237826:134239653:134239959,	134237633	134237826	134237718	134237718	Frame_Shift_Del	G	-	p.L145fs
COAD	TCGA-A6-6650-01	WNK1	ENST00000315939.6,ENST00000537687.1,ENST00000530271.2,ENST00000447667.2	chr12	862731:863490:922807:922980:936207:936428,	922808	922980	922896	922899	Frame_Shift_Del	TTTA	-	p.283_284del
COAD	TCGA-CM-5861-01	WNK2	ENST00000448039.1,ENST00000395475.2	chr9	96015164:96015364:96019229:96019421:96021212:96021357,	96019230	96019421	96019305	96019305	Frame_Shift_Del	C	-	p.V755fs
COAD	TCGA-AD-5900-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051190	96051190	Frame_Shift_Del	C	-	p.A1385fs
COAD	TCGA-A6-6653-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
COAD	TCGA-AA-3663-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
COAD	TCGA-D5-6930-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40948140:40948340:40948498:40948596:40948703:40948954,	40948499	40948596	40948563	40948563	Frame_Shift_Del	G	-	p.K1232fs
COAD	TCGA-A6-6781-01	WTIP	ENST00000585928.1,ENST00000590071.2,ENST00000270288.6	chr19	34984396:34984527:34985490:34985542:34986607:34986676,	34985491	34985542	34985493	34985493	Frame_Shift_Del	T	-	p.V345fs
COAD	TCGA-G4-6586-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100190	168100190	Frame_Shift_Del	A	-	p.E541fs
COAD	TCGA-CM-5348-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102759	168102772	Frame_Shift_Del	TGAAAGAGAGATTT	-	p.1397_1401del
COAD	TCGA-F4-6856-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104863	168104864	Frame_Shift_Ins	-	A	p.E2099fs
COAD	TCGA-G4-6320-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104864	168104864	Frame_Shift_Del	A	-	p.E2099fs
COAD	TCGA-AD-6895-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106361	168106361	Frame_Shift_Del	A	-	p.E2598fs
COAD	TCGA-D5-6928-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106361	168106361	Frame_Shift_Del	A	-	p.E2598fs
COAD	TCGA-CM-6171-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106943	168106944	Frame_Shift_Del	AT	-	p.2792_2792del
COAD	TCGA-CA-6717-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168108332	168108333	Frame_Shift_Ins	-	A	p.R3255fs
COAD	TCGA-CM-4746-01	XPO5	ENST00000265351.7	chr6	43526237:43526328:43527914:43528040:43528660:43528744,	43527915	43528040	43528008	43528009	Frame_Shift_Ins	-	C	p.G376fs
COAD	TCGA-CM-6677-01	XRCC3	ENST00000554913.1,ENST00000553807.1,ENST00000555055.1,ENST00000445556.1,ENST00000553264.1,ENST00000352127.7	chr14	104169614:104169664:104173339:104173552:104174858:104174996,	104173340	104173552	104173517	104173518	Frame_Shift_Ins	-	G	p.T77fs
COAD	TCGA-A6-6653-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
COAD	TCGA-AD-6889-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
COAD	TCGA-G4-6588-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
COAD	TCGA-AZ-4615-01	YIF1A	ENST00000376899.4,ENST00000528575.1,ENST00000431556.2,ENST00000359461.6,ENST00000376901.4	chr11	66055068:66055147:66055282:66055387:66056425:66056478,66055068:66055147:66055282:66055387:66055551:66055763,	66055283	66055387	66055345	66055346	Frame_Shift_Ins	-	A	p.A96fs
COAD	TCGA-CK-5913-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264441	75264441	Frame_Shift_Del	G	-	p.R814fs
COAD	TCGA-A6-6781-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265533	75265533	Frame_Shift_Del	A	-	p.E1178fs
COAD	TCGA-A6-5665-01	YPEL4	ENST00000534810.1,ENST00000529776.1	chr11	57414223:57414267:57414439:57414675:57417157:57417248,	57414440	57414675	57414538	57414539	Frame_Shift_Ins	-	G	p.T15fs
COAD	TCGA-A6-5665-01	YPEL4	ENST00000532314.1	chr11	57414223:57414267:57414439:57414764:57417157:57417248,57413822:57413878:57414439:57414764:57417157:57417248,	57414440	57414764	57414538	57414539	Frame_Shift_Ins	-	G	p.T15fs
COAD	TCGA-CK-5913-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069182	29069183	Frame_Shift_Ins	-	G	p.W134fs
COAD	TCGA-A6-6781-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29070155	29070155	Frame_Shift_Del	T	-	p.L458fs
COAD	TCGA-AM-5820-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728643	100728644	Frame_Shift_Ins	-	A	p.E228fs
COAD	TCGA-AU-6004-01	ZBTB10	ENST00000430430.1	chr8	81397901:81398118:81398483:81400017:81411728:81412617,	81398484	81400017	81399381	81399381	Frame_Shift_Del	C	-	p.G112fs
COAD	TCGA-CM-4746-01	ZCCHC14	ENST00000268616.4,ENST00000568020.1	chr16	87457415:87457487:87466733:87466807:87493613:87493737,	87466734	87466807	87466762	87466762	Frame_Shift_Del	T	-	p.N110fs
COAD	TCGA-G4-6309-01	ZCCHC2	ENST00000585873.1,ENST00000591145.1	chr18	60242530:60242783:60243744:60243885:60251678:60251828,	60243745	60243885	60243776	60243776	Frame_Shift_Del	C	-	p.L1167fs
COAD	TCGA-D5-6540-01	ZCCHC7	ENST00000496099.1,ENST00000461038.1,ENST00000336755.5,ENST00000497924.1,ENST00000488607.1,ENST00000534928.1,ENST00000481507.1	chr9	37349353:37349449:37354706:37354821:37356831:37356977,	37354707	37354821	37354809	37354810	Frame_Shift_Ins	-	A	p.Q396fs
COAD	TCGA-CM-6171-01	ZCCHC8	ENST00000540586.1,ENST00000543897.1	chr12	122967181:122967242:122967825:122968110:122973932:122974010,	122967826	122968110	122968077	122968077	Frame_Shift_Del	A	-	p.C179fs
COAD	TCGA-CM-6171-01	ZCCHC8	ENST00000336229.4	chr12	122967825:122967891:122968006:122968110:122973932:122974010,	122968007	122968110	122968077	122968077	Frame_Shift_Del	A	-	p.C179fs
COAD	TCGA-AD-6890-01	ZCWPW1	ENST00000472716.1	chr7	100016768:100016812:100017252:100017436:100018244:100018301,	100017253	100017436	100017356	100017356	Frame_Shift_Del	A	-	p.L60fs
COAD	TCGA-AD-6890-01	ZCWPW1	ENST00000464510.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100016768:100016812:100017252:100017506:100018244:100018301,	100017253	100017506	100017356	100017356	Frame_Shift_Del	A	-	p.L60fs
COAD	TCGA-G4-6628-01	ZDHHC14	ENST00000341375.8,ENST00000359775.5,ENST00000414563.2	chr6	158014040:158014178:158049380:158049518:158053865:158053914,	158049381	158049518	158049445	158049446	Frame_Shift_Ins	-	A	p.F210fs
COAD	TCGA-D5-6927-01	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44975379:44975476:44986659:44986784:45000618:45000924,44975379:44975476:44986659:44986784:45000622:45000952,	44986660	44986784	44986781	44986781	Frame_Shift_Del	C	-	p.A104fs
COAD	TCGA-CK-5916-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038669	72038670	Frame_Shift_Ins	-	T	p.V423fs
COAD	TCGA-AZ-6598-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.W386fs
COAD	TCGA-A6-6780-01	ZFR	ENST00000265069.8	chr5	32404010:32404202:32406878:32407126:32415073:32415292,	32406879	32407126	32406944	32406945	Frame_Shift_Ins	-	T	p.Q323fs
COAD	TCGA-D5-6540-01	ZFYVE16	ENST00000338008.5,ENST00000511829.1,ENST00000505560.1,ENST00000512907.1,ENST00000510158.1	chr5	79752763:79752911:79755232:79755313:79768579:79768742,	79755233	79755313	79755270	79755270	Frame_Shift_Del	A	-	p.L1327fs
COAD	TCGA-G4-6588-01	ZFYVE28	ENST00000290974.2,ENST00000511071.1,ENST00000503000.1	chr4	2343204:2343342:2355659:2355800:2366212:2366531,2343204:2343342:2355659:2355800:2420011:2420336,	2355660	2355800	2355701	2355701	Frame_Shift_Del	G	-	p.Q47fs
COAD	TCGA-AA-3663-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965800	123965800	Frame_Shift_Del	A	-	p.L683fs
COAD	TCGA-A6-5661-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965953	123965953	Frame_Shift_Del	A	-	p.P734fs
COAD	TCGA-AD-5900-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832224	39832224	Frame_Shift_Del	G	-	p.L445fs
COAD	TCGA-AD-5900-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832224	39832224	Frame_Shift_Del	G	-	p.L445fs
COAD	TCGA-A6-5665-01	ZMIZ2	ENST00000416856.1	chr7	44796023:44796138:44796573:44796748:44796976:44797160,	44796574	44796748	44796714	44796714	Frame_Shift_Del	G	-	p.R111fs
COAD	TCGA-A6-5665-01	ZMIZ2	ENST00000433667.1,ENST00000413916.1	chr7	44796023:44796138:44796641:44796748:44796976:44797160,	44796642	44796748	44796714	44796714	Frame_Shift_Del	G	-	p.R111fs
COAD	TCGA-A6-5665-01	ZMIZ2	ENST00000309315.4,ENST00000441627.1,ENST00000265346.7	chr7	44796023:44796138:44796545:44796748:44796976:44797160,	44796546	44796748	44796714	44796714	Frame_Shift_Del	G	-	p.R111fs
COAD	TCGA-CK-5916-01	ZMYM2	ENST00000382871.2,ENST00000382881.3,ENST00000382874.2,ENST00000382869.3	chr13	20567965:20568059:20576989:20577275:20579213:20579379,	20576990	20577275	20577144	20577145	Frame_Shift_Ins	-	A	p.C334fs
COAD	TCGA-AD-6889-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472854	70472854	Frame_Shift_Del	C	-	p.L85fs
COAD	TCGA-G4-6586-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472854	70472854	Frame_Shift_Del	C	-	p.L85fs
COAD	TCGA-D5-6928-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35853054:35853205:35854510:35854683:35855548:35855699,	35854511	35854683	35854659	35854660	Frame_Shift_Ins	-	A	p.S804fs
COAD	TCGA-AZ-6598-01	ZMYM5	ENST00000535942.1	chr13	20409616:20409829:20411795:20411961:20412839:20413125,20409616:20409829:20411795:20411961:20425494:20425588,	20411796	20411961	20411844	20411844	Frame_Shift_Del	T	-	p.G331fs
COAD	TCGA-A6-5665-01	ZMYND15	ENST00000592813.1	chr17	4643336:4643345:4643813:4644435:4644876:4645111,	4643814	4644435	4644304	4644304	Frame_Shift_Del	C	-	p.S154fs
COAD	TCGA-CM-4743-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481542	140481542	Frame_Shift_Del	C	-	p.G79fs
COAD	TCGA-G4-6309-01	ZMYND8	ENST00000461685.1,ENST00000262975.4,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000446994.2,ENST00000471951.2	chr20	45839405:45839542:45841286:45841370:45848908:45848975,	45841287	45841370	45841297	45841297	Frame_Shift_Del	G	-	p.A1141fs
COAD	TCGA-AZ-6598-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45875028	45875028	Frame_Shift_Del	T	-	p.S670fs
COAD	TCGA-CM-6678-01	ZNF12	ENST00000394917.3,ENST00000405858.1,ENST00000342651.5	chr7	6737319:6737442:6744789:6744854:6746062:6746167,	6744790	6744854	6744803	6744804	Frame_Shift_Ins	-	T	p.M1fs
COAD	TCGA-CM-6674-01	ZNF131	ENST00000509156.1,ENST00000399534.1	chr5	43123310:43123412:43161350:43162033:43173419:43173550,43139266:43139411:43161350:43162033:43173419:43173550,	43161351	43162033	43161406	43161406	Frame_Shift_Del	A	-	p.A142fs
COAD	TCGA-AA-3713-01	ZNF133	ENST00000535822.1	chr20	18269177:18269248:18286962:18287037:18295712:18295750,	18286963	18287037	18287007	18287008	Frame_Shift_Ins	-	A	p.E63fs
COAD	TCGA-A6-6780-01	ZNF215	ENST00000527171.1	chr11	6962801:6962884:6964776:6964872:6976920:6977013,	6964777	6964872	6964824	6964824	Frame_Shift_Del	A	-	p.K221fs
COAD	TCGA-G4-6309-01	ZNF221	ENST00000587682.1	chr19	44455396:44455552:44466876:44466959:44469101:44469228,	44466877	44466959	44466915	44466916	Frame_Shift_Del	CT	-	p.12_13del
COAD	TCGA-A6-5661-01	ZNF330	ENST00000512738.1	chr4	142142087:142142262:142143519:142143645:142145640:142145660,142142083:142142170:142143519:142143645:142145640:142145660,	142143520	142143645	142143531	142143532	Frame_Shift_Ins	-	A	p.P2fs
COAD	TCGA-A6-5661-01	ZNF330	ENST00000507532.1	chr4	142142087:142142262:142143519:142143631:142145640:142145660,	142143520	142143631	142143531	142143532	Frame_Shift_Ins	-	A	p.P2fs
COAD	TCGA-AY-6197-01	ZNF330	ENST00000512738.1	chr4	142142087:142142262:142143519:142143645:142145640:142145660,142142083:142142170:142143519:142143645:142145640:142145660,	142143520	142143645	142143532	142143532	Frame_Shift_Del	A	-	p.P2fs
COAD	TCGA-AY-6197-01	ZNF330	ENST00000507532.1	chr4	142142087:142142262:142143519:142143631:142145640:142145660,	142143520	142143631	142143532	142143532	Frame_Shift_Del	A	-	p.P2fs
COAD	TCGA-AA-3663-01	ZNF362	ENST00000373428.5,ENST00000539719.1	chr1	33741948:33742195:33745724:33746058:33747187:33747412,	33745725	33746058	33745882	33745882	Frame_Shift_Del	C	-	p.S169fs
COAD	TCGA-AZ-4615-01	ZNF362	ENST00000373428.5,ENST00000539719.1	chr1	33741948:33742195:33745724:33746058:33747187:33747412,	33745725	33746058	33745981	33745981	Frame_Shift_Del	G	-	p.P202fs
COAD	TCGA-AD-6895-01	ZNF365	ENST00000395251.1,ENST00000461412.1	chr10	64414602:64414690:64415126:64415391:64416155:64416246,	64415127	64415391	64415160	64415161	Frame_Shift_Ins	-	C	p.A54fs
COAD	TCGA-CK-5913-01	ZNF385D	ENST00000281523.2	chr3	21478568:21478695:21552352:21552515:21606065:21606176,	21552353	21552515	21552356	21552356	Frame_Shift_Del	T	-	p.T146fs
COAD	TCGA-CM-5868-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438355	58438356	Frame_Shift_Del	AT	-	p.398_399del
COAD	TCGA-AZ-6598-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438783	58438783	Frame_Shift_Del	T	-	p.R256fs
COAD	TCGA-G4-6586-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384448	12384448	Frame_Shift_Del	A	-	p.W256fs
COAD	TCGA-G4-6628-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384448	12384448	Frame_Shift_Del	A	-	p.W256fs
COAD	TCGA-AA-3713-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906350	19906351	Frame_Shift_Ins	-	T	p.G84fs
COAD	TCGA-DM-A1D8-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906350	19906351	Frame_Shift_Ins	-	T	p.G84fs
COAD	TCGA-AD-5900-01	ZNF541	ENST00000391901.3	chr19	48036165:48036229:48041398:48041696:48043432:48043592,48036165:48036229:48041398:48041696:48042961:48043135,	48041399	48041696	48041500	48041500	Frame_Shift_Del	G	-	p.P1017fs
COAD	TCGA-AD-5900-01	ZNF541	ENST00000314121.4	chr19	48036165:48036229:48041398:48041753:48042961:48043135,	48041399	48041753	48041500	48041500	Frame_Shift_Del	G	-	p.P1017fs
COAD	TCGA-AD-5900-01	ZNF561	ENST00000465974.1	chr19	9727837:9727847:9728766:9728855:9730107:9730205,9727877:9727902:9728766:9728855:9730107:9730205,9724734:9724779:9728766:9728855:9730107:9730205,	9728767	9728855	9728847	9728847	Frame_Shift_Del	A	-	p.S12fs
COAD	TCGA-G4-6588-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37209935	37209936	Frame_Shift_Ins	-	A	p.H72fs
COAD	TCGA-AY-6197-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210374	37210375	Frame_Shift_Ins	-	A	p.E219fs
COAD	TCGA-CM-6674-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210620	37210623	Frame_Shift_Del	ACAG	-	p.300_301del
COAD	TCGA-F4-6570-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966750	64966750	Frame_Shift_Del	C	-	p.T566fs
COAD	TCGA-AU-6004-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967247	64967247	Frame_Shift_Del	A	-	p.D731fs
COAD	TCGA-G4-6628-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967247	64967247	Frame_Shift_Del	A	-	p.D731fs
COAD	TCGA-AY-6197-01	ZNF620	ENST00000314529.6,ENST00000420891.1	chr3	40552960:40553087:40553892:40554006:40557350:40557435,	40553893	40554006	40553936	40553937	Frame_Shift_Ins	-	G	p.Q65fs
COAD	TCGA-A6-5665-01	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71576670	71576673	Frame_Shift_Del	AAAG	-	p.195_196del
COAD	TCGA-A6-5665-01	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71576670	71576673	Frame_Shift_Del	AAAG	-	p.195_196del
COAD	TCGA-CK-5916-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394194	47394195	Frame_Shift_Ins	-	T	p.N298fs
COAD	TCGA-D5-6930-01	ZNF683	ENST00000349618.3,ENST00000374204.1,ENST00000403843.1,ENST00000436292.1	chr1	26689516:26689645:26691022:26691717:26694083:26694138,	26691023	26691717	26691599	26691599	Frame_Shift_Del	G	-	p.C147fs
COAD	TCGA-G4-6586-01	ZNF69	ENST00000340180.5	chr19	12014719:12014780:12015463:12015702:12024223:12025144,	12015464	12015702	12015597	12015597	Frame_Shift_Del	T	-	p.S114fs
COAD	TCGA-F4-6856-01	ZNF740	ENST00000416904.3,ENST00000552593.1	chr12	53578674:53578824:53579170:53579260:53579737:53579815,	53579171	53579260	53579241	53579242	Frame_Shift_Ins	-	A	p.S77fs
COAD	TCGA-AD-6889-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371752.1	chr20	47871031:47871186:47872344:47872484:47873953:47874201,	47872345	47872484	47872451	47872451	Frame_Shift_Del	T	-	p.R900fs
COAD	TCGA-CM-5861-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47886690	47886691	Frame_Shift_Ins	-	C	p.G553fs
COAD	TCGA-A6-6653-01	ZNRF3	ENST00000402174.1,ENST00000406323.3,ENST00000544604.2,ENST00000332811.4	chr22	29440767:29440878:29442703:29442871:29444376:29444479,	29442704	29442871	29442797	29442797	Frame_Shift_Del	G	-	p.C179fs
COAD	TCGA-F4-6703-01	ZSCAN12	ENST00000396827.3,ENST00000361028.1	chr6	28349967:28350386:28358372:28359519:28360678:28360823,	28358373	28359519	28358666	28358666	Frame_Shift_Del	T	-	p.P468fs
COAD	TCGA-F4-6570-01	POLE	ENST00000535270.1,ENST00000539006.1,ENST00000320574.5,ENST00000537064.1	chr12	133250160:133250293:133251983:133252103:133252320:133252406,	133251984	133252103	133252024	133252024	Frame_Shift_Del	C	-	p.E396fs
COAD	TCGA-AA-A01Q-01	AAAS	ENST00000548931.1,ENST00000550286.1,ENST00000394384.3,ENST00000209873.4,ENST00000550033.1,ENST00000552876.1	chr12	53701835:53701917:53702065:53702133:53702218:53702312,	53702066	53702133	53702089	53702090	Frame_Shift_Ins	-	C	p.E409fs
COAD	TCGA-AA-3525-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87049313:87049391:87051436:87051541:87053221:87053368,	87051437	87051541	87051451	87051452	Frame_Shift_Ins	-	A	p.T768fs
COAD	TCGA-AA-3555-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.L72fs
COAD	TCGA-A6-2676-01	ANGEL2	ENST00000481918.1	chr1	213181551:213181808:213186434:213186760:213188567:213188835,	213186435	213186760	213186743	213186744	Frame_Shift_Ins	-	G	p.H26fs
COAD	TCGA-A6-2676-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114279033	114279034	Frame_Shift_Ins	-	C	p.T3087fs
COAD	TCGA-A6-2676-01	AP2B1	ENST00000592191.1,ENST00000262325.7,ENST00000589344.1,ENST00000312678.8,ENST00000537622.2,ENST00000592545.1,ENST00000545922.2,ENST00000538556.1	chr17	34036242:34036327:34037252:34037339:34044213:34044368,	34037253	34037339	34037294	34037295	Frame_Shift_Ins	-	A	p.E847fs
COAD	TCGA-AA-3516-01	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99065312:99065497:99071202:99071329:99074054:99074180,	99071203	99071329	99071207	99071208	Frame_Shift_Del	AA	-	p.589_589del
COAD	TCGA-A6-2676-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088668	27088669	Frame_Shift_Ins	-	C	p.M759fs
COAD	TCGA-AA-A00J-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743222	130743223	Frame_Shift_Del	AA	-	p.310_310del
COAD	TCGA-AA-A01Q-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384893	124384893	Frame_Shift_Del	T	-	p.K118fs
COAD	TCGA-AA-A00E-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56883813:56884023:56885518:56885721:56886841:56886946,	56885519	56885721	56885563	56885564	Frame_Shift_Ins	-	A	p.L1019fs
COAD	TCGA-AA-A00A-01	CHMP5	ENST00000223500.8	chr9	33276453:33276562:33278110:33278223:33280806:33280949,	33278111	33278223	33278213	33278214	Frame_Shift_Ins	-	A	p.T200fs
COAD	TCGA-AA-A00K-01	COL11A2	ENST00000341947.2,ENST00000457788.1,ENST00000374714.1	chr6	33148887:33148947:33151921:33152101:33153477:33153555,33148887:33148947:33151921:33152101:33154403:33154595,33148887:33148947:33151921:33152101:33152768:33152831,	33151922	33152101	33152080	33152081	Frame_Shift_Ins	-	C	p.P321fs
COAD	TCGA-A6-2676-01	COL17A1	ENST00000369733.3,ENST00000353479.5	chr10	105811912:105811975:105812788:105812893:105813677:105813740,	105812789	105812893	105812843	105812844	Frame_Shift_Ins	-	G	p.M629fs
COAD	TCGA-AA-A01Q-01	CTSF	ENST00000310325.5	chr11	66330934:66331478:66331558:66331617:66332028:66332119,	66331559	66331617	66331577	66331578	Frame_Shift_Ins	-	C	p.G454fs
COAD	TCGA-AA-3543-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148489817:148489910:148494903:148494951:148495028:148495111,	148494904	148494951	148494907	148494908	Frame_Shift_Ins	-	T	p.I635fs
COAD	TCGA-A6-2676-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43171591:43171725:43172097:43172277:43172485:43172595,	43172098	43172277	43172149	43172150	Frame_Shift_Del	AG	-	p.1404_1404del
COAD	TCGA-A6-2676-01	CYBRD1	ENST00000409484.1,ENST00000321348.4,ENST00000445146.1	chr2	172379020:172379248:172409855:172410010:172411033:172411117,172398094:172398303:172409855:172410010:172411033:172411117,	172409856	172410010	172410000	172410001	Frame_Shift_Ins	-	T	p.I183fs
COAD	TCGA-AA-3516-01	DFFA	ENST00000377036.2,ENST00000377038.3	chr1	10523114:10523266:10523487:10523677:10527246:10527389,	10523488	10523677	10523596	10523597	Frame_Shift_Del	GT	-	p.174_175del
COAD	TCGA-AA-A01Q-01	DNAJC21	ENST00000382021.2	chr5	34944971:34945130:34945865:34945908:34950274:34950447,34944971:34945130:34945865:34945908:34949647:34949782,	34945866	34945908	34945872	34945873	Frame_Shift_Ins	-	A	p.S383fs
COAD	TCGA-AA-A01Q-01	DNAJC21	ENST00000514237.1,ENST00000303525.7	chr5	34944971:34945130:34945826:34945908:34950274:34950447,	34945827	34945908	34945872	34945873	Frame_Shift_Ins	-	A	p.S383fs
COAD	TCGA-AA-3525-01	DPP10	ENST00000393147.2,ENST00000409163.1,ENST00000410059.1,ENST00000310323.8	chr2	116510749:116510873:116520147:116520186:116525872:116525980,	116520148	116520186	116520174	116520175	Frame_Shift_Ins	-	CT	p.W317fs
COAD	TCGA-AA-A01Q-01	ELK3	ENST00000552142.1	chr12	96588391:96588483:96617342:96617551:96653508:96653631,	96617343	96617551	96617494	96617495	Frame_Shift_Ins	-	A	p.N50fs
COAD	TCGA-AA-3527-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641028	96641029	Frame_Shift_Ins	-	C	p.S173fs
COAD	TCGA-A6-2672-01	EREG	ENST00000507603.1	chr4	75230889:75231092:75245164:75245251:75246730:75246854,	75245165	75245251	75245229	75245230	Frame_Shift_Del	CA	-	p.44_45del
COAD	TCGA-AA-3555-01	ETNK2	ENST00000472340.1,ENST00000422699.1,ENST00000367199.2,ENST00000367202.4,ENST00000367197.1,ENST00000367198.2,ENST00000422072.1	chr1	204103675:204103716:204106231:204106377:204109162:204109246,	204106232	204106377	204106328	204106329	Frame_Shift_Ins	-	A	p.L306fs
COAD	TCGA-AA-A00A-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5617148:5617271:5620204:5620409:5624263:5624718,	5620205	5620409	5620303	5620304	Frame_Shift_Ins	-	G	p.K870fs
COAD	TCGA-AA-A01Q-01	FAM114A1	ENST00000358869.2	chr4	38869436:38869455:38893363:38893451:38907142:38907256,38879691:38880047:38893363:38893451:38907142:38907256,	38893364	38893451	38893412	38893413	Frame_Shift_Ins	-	G	p.W133fs
COAD	TCGA-AA-A00J-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000440067.1,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102667895:102668005:102669046:102669195:102669797:102669865,	102669047	102669195	102669142	102669143	Frame_Shift_Ins	-	T	p.M41fs
COAD	TCGA-A6-2683-01	FERMT1	ENST00000536936.1	chr20	6078170:6078278:6088178:6088281:6090944:6091158,6078170:6078278:6088178:6088281:6093123:6093270,	6088179	6088281	6088233	6088233	Frame_Shift_Del	A	-	p.D265fs
COAD	TCGA-AA-3516-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.483_483del
COAD	TCGA-AA-3516-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.483_483del
COAD	TCGA-AA-3518-01	GBP3	ENST00000235878.5,ENST00000370481.4,ENST00000493594.2	chr1	89477510:89477710:89478867:89479110:89479765:89479962,	89478868	89479110	89479039	89479040	Frame_Shift_Ins	-	T	p.C233fs
COAD	TCGA-AA-3518-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000470197.1,ENST00000427862.1,ENST00000409857.3	chr2	75891770:75891909:75893054:75893179:75897263:75897340,	75893055	75893179	75893155	75893156	Frame_Shift_Ins	-	T	p.W710fs
COAD	TCGA-AA-A01Q-01	GEMIN2	ENST00000250379.8	chr14	39594195:39594240:39597483:39597552:39601161:39601227,39591633:39591747:39597483:39597552:39601161:39601227,	39597484	39597552	39597532	39597533	Frame_Shift_Del	AG	-	p.205_205del
COAD	TCGA-AA-3518-01	GKAP1	ENST00000376365.3,ENST00000376371.2,ENST00000388782.4	chr9	86414099:86414243:86421216:86421475:86431910:86432042,	86421217	86421475	86421246	86421247	Frame_Shift_Del	TC	-	p.62_63del
COAD	TCGA-AA-A01Q-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862228	4862229	Frame_Shift_Ins	-	C	p.R381fs
COAD	TCGA-AA-3542-01	GTF3C5	ENST00000372108.5,ENST00000342018.8	chr9	135906097:135906297:135917473:135917693:135919114:135919313,135906404:135906551:135917473:135917693:135919114:135919313,	135917474	135917693	135917523	135917523	Frame_Shift_Del	A	-	p.D68fs
COAD	TCGA-AA-3525-01	GUSB	ENST00000304895.4,ENST00000345660.6,ENST00000478118.1	chr7	65444464:65444528:65444713:65444898:65445210:65445392,	65444714	65444898	65444760	65444761	Frame_Shift_Ins	-	G	p.T179fs
COAD	TCGA-A6-2676-01	HDLBP	ENST00000453141.1	chr2	242194556:242194573:242194788:242194926:242195598:242195814,	242194789	242194926	242194897	242194898	Frame_Shift_Del	TC	-	p.324_324del
COAD	TCGA-A6-2676-01	HDLBP	ENST00000391975.1,ENST00000391976.2,ENST00000310931.4	chr2	242194556:242194573:242194788:242194995:242195598:242195814,	242194789	242194995	242194897	242194898	Frame_Shift_Del	TC	-	p.324_324del
COAD	TCGA-AA-A00E-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186986	100186987	Frame_Shift_Ins	-	G	p.M325fs
COAD	TCGA-AA-A01Q-01	HPS3	ENST00000460120.1,ENST00000296051.2,ENST00000486530.1,ENST00000462030.1	chr3	148859081:148859167:148863140:148863333:148868385:148868467,	148863141	148863333	148863159	148863160	Frame_Shift_Ins	-	A	p.G330fs
COAD	TCGA-AA-3542-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75157280	75157281	Frame_Shift_Ins	-	G	p.P463fs
COAD	TCGA-AA-A00A-01	KCTD9	ENST00000523140.1,ENST00000519665.1,ENST00000522493.1,ENST00000221200.4	chr8	25293933:25294001:25296794:25296923:25297121:25297180,	25296795	25296923	25296814	25296815	Frame_Shift_Ins	-	T	p.N160fs
COAD	TCGA-AA-3516-01	KIAA1324	ENST00000457623.2	chr1	109716309:109716459:109727666:109727755:109730798:109730976,109716095:109716201:109727666:109727755:109730798:109730976,	109727667	109727755	109727724	109727725	Frame_Shift_Del	AC	-	p.337_337del
COAD	TCGA-AA-3518-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173389	154173390	Frame_Shift_Ins	-	C	p.A223fs
COAD	TCGA-AA-3518-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173389	154173390	Frame_Shift_Ins	-	C	p.A223fs
COAD	TCGA-AA-A00J-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470660	161470661	Frame_Shift_Del	GG	-	p.452_453del
COAD	TCGA-AA-A00E-01	MAPKBP1	ENST00000456763.2,ENST00000502292.1,ENST00000457542.2,ENST00000514566.1	chr15	42106747:42106937:42107456:42107603:42107821:42107997,	42107457	42107603	42107495	42107496	Frame_Shift_Ins	-	C	p.L409fs
COAD	TCGA-AA-A00A-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459055	27459056	Frame_Shift_Ins	-	A	p.A389fs
COAD	TCGA-AA-A00A-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247244	149247245	Frame_Shift_Ins	-	C	p.S1115fs
COAD	TCGA-AA-3525-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962451	21962452	Frame_Shift_Ins	-	G	p.E408fs
COAD	TCGA-AA-A00L-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962771	21962774	Frame_Shift_Del	GTCT	-	p.515_516del
COAD	TCGA-AA-A00L-01	MLLT10	ENST00000438473.1	chr10	21959377:21959633:21962569:21962848:21970260:21970305,	21962570	21962848	21962771	21962774	Frame_Shift_Del	GTCT	-	p.515_516del
COAD	TCGA-AA-A01Q-01	MTA1	ENST00000331320.7,ENST00000438610.1,ENST00000406191.1	chr14	105905008:105905076:105911754:105911848:105915695:105915746,	105911755	105911848	105911771	105911772	Frame_Shift_Ins	-	G	p.V38fs
COAD	TCGA-AA-A01Q-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62838946:62839840:62842558:62842693:62843400:62843491,	62842559	62842693	62842682	62842683	Frame_Shift_Ins	-	C	p.I472fs
COAD	TCGA-AA-A00J-01	NAPA	ENST00000602174.1,ENST00000597118.1,ENST00000595227.1,ENST00000602082.1,ENST00000601927.1,ENST00000597274.1,ENST00000263354.3,ENST00000596892.1,ENST00000593761.1,ENST00000598615.1,ENST00000594001.1,ENST00000601208.1,ENST00000594288.1,ENST00000595826.1	chr19	47995317:47995376:47996672:47996750:47998806:47998853,47996375:47996431:47996672:47996750:47998806:47998853,	47996673	47996750	47996727	47996728	Frame_Shift_Ins	-	T	p.K122fs
COAD	TCGA-AA-3518-01	NEK7	ENST00000367385.4,ENST00000538004.1,ENST00000391974.3	chr1	198201682:198201767:198222169:198222310:198231704:198231753,	198222170	198222310	198222297	198222298	Frame_Shift_Ins	-	A	p.L62fs
COAD	TCGA-AA-A01Q-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13620991	13620992	Frame_Shift_Ins	-	A	p.Q236fs
COAD	TCGA-AA-A01Q-01	NRBP2	ENST00000529747.1,ENST00000533093.1,ENST00000327830.5,ENST00000532940.1,ENST00000442628.2,ENST00000533846.1	chr8	144919796:144919927:144920851:144920947:144921054:144921110,	144920852	144920947	144920910	144920911	Frame_Shift_Ins	-	G	p.R261fs
COAD	TCGA-AA-A01G-01	OGT	ENST00000459760.1,ENST00000373719.3,ENST00000373701.3	chrX	70774408:70774442:70775039:70775235:70775803:70775944,	70775040	70775235	70775084	70775085	Frame_Shift_Ins	-	CC	p.H248fs
COAD	TCGA-AA-3518-01	OLAH	ENST00000378217.3	chr10	15091721:15091764:15098822:15098981:15103722:15103861,	15098823	15098981	15098973	15098973	Frame_Shift_Del	T	-	p.I105fs
COAD	TCGA-AA-3516-01	OPHN1	ENST00000355520.5,ENST00000484842.1	chrX	67273486:67273652:67292993:67293141:67316711:67316871,67283695:67284019:67292993:67293141:67316711:67316871,	67292994	67293141	67293049	67293050	Frame_Shift_Ins	-	T	p.K593fs
COAD	TCGA-AA-A00J-01	ORC4	ENST00000535373.1,ENST00000536575.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000392858.1	chr2	148701004:148701091:148705619:148705793:148712915:148712964,148701004:148701091:148705619:148705793:148709941:148710082,	148705620	148705793	148705768	148705769	Frame_Shift_Ins	-	T	p.R205fs
COAD	TCGA-AA-A01Q-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345683	122345684	Frame_Shift_Ins	-	A	p.G180fs
COAD	TCGA-AA-3525-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089075	32089076	Frame_Shift_Ins	-	A	p.Q1841fs
COAD	TCGA-AA-A01Q-01	PI4KA	ENST00000572273.1,ENST00000485963.1	chr22	21188849:21188943:21192902:21193019:21212857:21213070,	21192903	21193019	21192923	21192924	Frame_Shift_Ins	-	A	p.L27fs
COAD	TCGA-AA-A00K-01	PIF1	ENST00000559239.1,ENST00000268043.4,ENST00000333425.6	chr15	65110455:65110543:65111315:65111422:65113180:65113287,65110455:65110543:65111315:65111422:65112045:65112185,	65111316	65111422	65111385	65111386	Frame_Shift_Del	AG	-	p.457_457del
COAD	TCGA-AA-3516-01	PLOD1	ENST00000376369.3,ENST00000196061.4	chr1	12023588:12023693:12024231:12024357:12024700:12024842,	12024232	12024357	12024284	12024285	Frame_Shift_Ins	-	G	p.W419fs
COAD	TCGA-AA-3525-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944499	4944500	Frame_Shift_Ins	-	G	p.T455fs
COAD	TCGA-A6-2676-01	PPP1R1B	ENST00000254079.4,ENST00000394265.1,ENST00000580825.1,ENST00000394267.2,ENST00000582680.1,ENST00000583446.1	chr17	37785657:37785815:37786224:37786300:37790135:37790199,	37786225	37786300	37786244	37786245	Frame_Shift_Ins	-	CCTT	p.H62fs
COAD	TCGA-AA-3518-01	PRR11	ENST00000581182.1,ENST00000578542.1,ENST00000580177.1	chr17	57233117:57233166:57247108:57247241:57262414:57262565,	57247109	57247241	57247171	57247171	Frame_Shift_Del	A	-	p.K20fs
COAD	TCGA-AA-A00J-01	RHBDL3	ENST00000431505.2	chr17	30621363:30621461:30625110:30625223:30632359:30632460,30621363:30621461:30625110:30625223:30643250:30643293,	30625111	30625223	30625159	30625160	Frame_Shift_Ins	-	C	p.V239fs
COAD	TCGA-AA-A01Q-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529513	219529514	Frame_Shift_Ins	-	C	p.G250fs
COAD	TCGA-AA-A00J-01	RPF1	ENST00000370654.5	chr1	84944949:84945192:84946638:84946695:84948597:84948678,	84946639	84946695	84946675	84946676	Frame_Shift_Del	AG	-	p.89_89del
COAD	TCGA-AA-A00J-01	SAMD4A	ENST00000392067.3,ENST00000357634.3,ENST00000554335.1	chr14	55168779:55169298:55203741:55204005:55215532:55215642,	55203742	55204005	55203792	55203795	Frame_Shift_Del	ACCC	-	p.255_256del
COAD	TCGA-AA-A00J-01	SART1	ENST00000312397.5,ENST00000533386.1	chr11	65744484:65744572:65745033:65745124:65745234:65745370,	65745034	65745124	65745072	65745073	Frame_Shift_Del	AA	-	p.662_662del
COAD	TCGA-AA-A00A-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320481	46320482	Frame_Shift_Ins	-	T	p.N1001fs
COAD	TCGA-AA-A00A-01	SCML2	ENST00000251900.4	chrX	18259362:18259499:18260558:18260710:18264696:18264948,	18260559	18260710	18260581	18260582	Frame_Shift_Ins	-	G	p.L651fs
COAD	TCGA-AA-A00K-01	SEMA4A	ENST00000368285.3,ENST00000435124.1,ENST00000355014.2,ENST00000368286.2,ENST00000368282.1,ENST00000438830.1	chr1	156124340:156124508:156126204:156126365:156127860:156127923,	156126205	156126365	156126289	156126290	Frame_Shift_Del	CT	-	p.75_75del
COAD	TCGA-AA-3525-01	SEPT2	ENST00000360051.3,ENST00000391973.2,ENST00000407017.1,ENST00000411484.1,ENST00000402092.2,ENST00000436795.1,ENST00000437066.1,ENST00000391971.2,ENST00000467971.1,ENST00000407971.1,ENST00000475474.1,ENST00000366210.2,ENST00000443492.1,ENST00000434955.1,ENST00000449239.1,ENST00000428282.1	chr2	242263630:242263656:242274540:242274627:242276796:242276848,242265407:242265528:242274540:242274627:242275389:242275488,	242274541	242274627	242274556	242274557	Frame_Shift_Ins	-	A	p.G49fs
COAD	TCGA-AA-A00A-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61423984:61424080:61432527:61432671:61443853:61444085,	61432528	61432671	61432545	61432546	Frame_Shift_Ins	-	A	p.S108fs
COAD	TCGA-A6-2676-01	SLC35G1	ENST00000427197.1	chr10	95653778:95653968:95658327:95658508:95660508:95662490,	95658328	95658508	95658416	95658417	Frame_Shift_Ins	-	A	p.V88fs
COAD	TCGA-AA-A00A-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95357931	95357932	Frame_Shift_Ins	-	T	p.A524fs
COAD	TCGA-AA-A00A-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	474997:475247:475675:475786:476134:476207,	475676	475786	475754	475755	Frame_Shift_Ins	-	G	p.N725fs
COAD	TCGA-AA-A01Q-01	SNX14	ENST00000513869.1	chr6	86267693:86267778:86275049:86275137:86281854:86281933,	86275050	86275137	86275079	86275080	Frame_Shift_Ins	-	A	p.A174fs
COAD	TCGA-AA-A00J-01	SPAG16	ENST00000272898.7,ENST00000374309.3,ENST00000440779.1,ENST00000331683.5,ENST00000413312.1,ENST00000447990.1,ENST00000406979.2	chr2	214181942:214182080:214204886:214204994:214228799:214228869,214181942:214182080:214204886:214204994:214215251:214215369,	214204887	214204994	214204963	214204964	Frame_Shift_Ins	-	A	p.E205fs
COAD	TCGA-AA-A00K-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000560764.1,ENST00000537840.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57524909:57525054:57526240:57526305:57535669:57535713,	57526241	57526305	57526286	57526296	Frame_Shift_Del	TTGGAAAGGCT	-	p.339_342del
COAD	TCGA-AA-A00J-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
COAD	TCGA-AA-A00A-01	TMEM135	ENST00000526733.1	chr11	86749081:86749228:86778735:86778863:86782564:86782657,86749081:86749228:86778735:86778863:86802403:86802437,	86778736	86778863	86778818	86778819	Frame_Shift_Ins	-	A	p.L75fs
COAD	TCGA-A6-2676-01	TNFAIP2	ENST00000538222.1,ENST00000559255.1	chr14	103600018:103600140:103601555:103601688:103602145:103602611,	103601556	103601688	103601588	103601589	Frame_Shift_Ins	-	G	p.K619fs
COAD	TCGA-AA-3560-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578214	Frame_Shift_Del	AA	-	p.212_212del
COAD	TCGA-AA-A00A-01	TPMT	ENST00000309983.4	chr6	18139895:18139948:18143826:18143959:18148053:18148146,	18143827	18143959	18143892	18143893	Frame_Shift_Ins	-	A	p.T101fs
COAD	TCGA-A6-2676-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10209241:10209340:10211383:10211619:10218413:10218540,	10211384	10211619	10211546	10211547	Frame_Shift_Ins	-	T	p.K822fs
COAD	TCGA-AA-A00K-01	UNC13D	ENST00000412096.2,ENST00000207549.4	chr17	73824910:73825064:73826108:73826232:73826442:73826518,	73826109	73826232	73826157	73826158	Frame_Shift_Ins	-	G	p.Q969fs
COAD	TCGA-AA-A00J-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91486141:91486312:91488121:91488293:91489843:91490144,	91488122	91488293	91488281	91488282	Frame_Shift_Del	AA	-	p.381_381del
COAD	TCGA-AA-3516-01	USP32	ENST00000590133.1,ENST00000300896.4,ENST00000393003.3	chr17	58348710:58348842:58365883:58366043:58372043:58372162,	58365884	58366043	58365901	58365902	Frame_Shift_Del	AG	-	p.185_185del
COAD	TCGA-AA-3516-01	VANGL2	ENST00000368061.2	chr1	160385851:160385972:160388791:160389399:160390200:160390337,	160388792	160389399	160388801	160388802	Frame_Shift_Ins	-	G	p.W68fs
COAD	TCGA-AA-A01Q-01	WDSUB1	ENST00000409990.3,ENST00000392796.3,ENST00000358147.4,ENST00000359774.4	chr2	160092344:160092701:160104882:160105023:160112706:160112882,	160104883	160105023	160104921	160104922	Frame_Shift_Ins	-	T	p.I412fs
COAD	TCGA-AA-A00A-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123963963	123963964	Frame_Shift_Ins	-	A	p.S71fs
COAD	TCGA-AA-A00J-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39831308	39831312	Frame_Shift_Del	TCACA	-	p.749_750del
COAD	TCGA-AA-A00J-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39831308	39831312	Frame_Shift_Del	TCACA	-	p.749_750del
COAD	TCGA-A6-2676-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90486350:90486481:90487808:90487904:90492912:90493375,	90487809	90487904	90487830	90487831	Frame_Shift_Del	AG	-	p.443_443del
DLBC	TCGA-FF-8062-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106158250	106158259	Frame_Shift_Del	CAGAAGCAAG	-	p.1050_1053del
DLBC	TCGA-G8-6914-01	FAM193A	ENST00000512465.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000513898.1,ENST00000324666.5	chr4	2628136:2628304:2632661:2632896:2641461:2641586,	2632662	2632896	2632799	2632800	Frame_Shift_Ins	-	C	p.G23fs
DLBC	TCGA-G8-6914-01	NBEAL1	ENST00000449802.1	chr2	204001321:204001497:204002884:204003038:204003342:204003471,	204002885	204003038	204002925	204002926	Frame_Shift_Del	AG	-	p.1506_1507del
DLBC	TCGA-GS-A9TT-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11000690	11000691	Frame_Shift_Del	TG	-	p.447_447del
DLBC	TCGA-GS-A9TT-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11000690	11000691	Frame_Shift_Del	TG	-	p.447_447del
DLBC	TCGA-GS-A9TT-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909678	24909679	Frame_Shift_Ins	-	G	p.Q382fs
DLBC	TCGA-FF-A7CQ-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000581631.1,ENST00000584897.1,ENST00000577880.1	chr18	2729272:2729407:2732262:2732490:2738394:2738543,	2732263	2732490	2732488	2732491	Frame_Shift_Del	AAAG	-	p.1091_1092del
DLBC	TCGA-FF-A7CQ-01	IGLL5	ENST00000532223.2	chr22	23230008:23230439:23235876:23235998:23237554:23237565,	23235877	23235998	23235883	23235884	Frame_Shift_Del	CC	-	p.70_70del
DLBC	TCGA-FF-A7CQ-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087138	117087139	Frame_Shift_Del	CT	-	p.53_54del
DLBC	TCGA-FF-A7CQ-01	IL22RA2	ENST00000349184.4,ENST00000296980.2	chr6	137464967:137466910:137468858:137469028:137476077:137476256,	137468859	137469028	137468925	137468926	Frame_Shift_Ins	-	T	p.N192fs
DLBC	TCGA-FA-A4XK-01	DLG5	ENST00000475613.2,ENST00000372388.2,ENST00000424842.1,ENST00000372391.2,ENST00000463362.1,ENST00000459739.1	chr10	79556208:79556352:79565422:79565619:79566515:79566686,	79565423	79565619	79565519	79565520	Frame_Shift_Ins	-	A	p.R1690fs
DLBC	TCGA-FM-8000-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277976	186277979	Frame_Shift_Del	GAGT	-	p.1042_1043del
DLBC	TCGA-FM-8000-01	MBNL2	ENST00000343600.4,ENST00000376673.3,ENST00000469707.1,ENST00000345429.6	chr13	97874608:97874785:97927885:97928663:97986529:97986694,	97927886	97928663	97928659	97928660	Frame_Shift_Ins	-	AA	p.L57fs
DLBC	TCGA-G8-6324-01	C11orf16	ENST00000326053.5	chr11	8941622:8941997:8942840:8943062:8947009:8947654,	8942841	8943062	8942889	8942890	Frame_Shift_Del	AT	-	p.460_460del
DLBC	TCGA-G8-6324-01	FMO2	ENST00000529935.1	chr1	171162473:171162662:171165787:171165950:171168484:171168564,171162473:171162662:171165787:171165950:171173003:171173128,	171165788	171165950	171165803	171165803	Frame_Shift_Del	G	-	p.S112fs
DLBC	TCGA-G8-6324-01	SUMF2	ENST00000434526.2,ENST00000529457.1,ENST00000498777.1,ENST00000447501.1,ENST00000413756.1,ENST00000437307.2,ENST00000342190.6,ENST00000423763.1	chr7	56136174:56136331:56140689:56140804:56145794:56145879,56136243:56136331:56140689:56140804:56144526:56144582,56136174:56136331:56140689:56140804:56141866:56141911,	56140690	56140804	56140760	56140761	Frame_Shift_Del	TT	-	p.117_118del
DLBC	TCGA-G8-6909-01	VWA3A	ENST00000566668.1	chr16	22143032:22143050:22144104:22144416:22145688:22145759,	22144105	22144416	22144375	22144375	Frame_Shift_Del	C	-	p.T676fs
DLBC	TCGA-G8-6909-01	VWA3A	ENST00000299840.6,ENST00000563389.1,ENST00000568328.1,ENST00000389397.4,ENST00000389398.5	chr16	22143032:22143050:22144220:22144416:22145688:22145759,	22144221	22144416	22144375	22144375	Frame_Shift_Del	C	-	p.T676fs
DLBC	TCGA-G8-6909-01	GRAMD1A	ENST00000504615.2,ENST00000317991.5,ENST00000599564.1,ENST00000411896.2,ENST00000600231.1	chr19	35504510:35504595:35505092:35505291:35506727:35506871,	35505093	35505291	35505282	35505282	Frame_Shift_Del	G	-	p.T353fs
DLBC	TCGA-G8-6909-01	DUSP18	ENST00000407308.1	chr22	31048082:31048284:31059390:31060067:31063448:31063796,31048082:31048284:31059390:31060067:31062793:31062925,	31059391	31060067	31059499	31059500	Frame_Shift_Del	CA	-	p.164_165del
DLBC	TCGA-G8-6909-01	HLA-C	ENST00000376237.4	chr6	31238215:31238262:31238849:31239108:31239375:31239533,	31238850	31239108	31238973	31238986	Frame_Shift_Del	TCTGAGCCGCGGTG	-	p.162_166del
DLBC	TCGA-G8-6909-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000495835.1,ENST00000415537.1	chr6	31238215:31238262:31238849:31239125:31239375:31239533,	31238850	31239125	31238973	31238986	Frame_Shift_Del	TCTGAGCCGCGGTG	-	p.162_166del
DLBC	TCGA-FF-A7CW-01	SLC35A2	ENST00000247138.5	chrX	48760537:48760742:48762022:48762759:48763668:48763820,	48762023	48762759	48762343	48762346	Frame_Shift_Del	GCCG	-	p.281_282del
DLBC	TCGA-FF-A7CW-01	FRAS1	ENST00000502446.1,ENST00000264895.6,ENST00000325942.6,ENST00000264899.6	chr4	79173545:79173705:79176395:79176529:79186178:79186262,	79176396	79176529	79176419	79176419	Frame_Shift_Del	G	-	p.H164fs
DLBC	TCGA-FA-A6HN-01	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248200	141248200	Frame_Shift_Del	C	-	p.F280fs
DLBC	TCGA-GS-A9TQ-01	CNPY4	ENST00000462193.1,ENST00000262932.3,ENST00000483756.1,ENST00000480692.1	chr7	99719881:99720008:99720103:99720200:99720406:99720529,	99720104	99720200	99720170	99720170	Frame_Shift_Del	T	-	p.A104fs
DLBC	TCGA-GS-A9TQ-01	ENTHD1	ENST00000325157.6	chr22	40139048:40140288:40161227:40161614:40216997:40217118,	40161228	40161614	40161596	40161599	Frame_Shift_Del	GAGA	-	p.283_284del
DLBC	TCGA-GS-A9TQ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135218076:135218186:135221647:135221858:135224638:135224822,	135221648	135221858	135221697	135221698	Frame_Shift_Ins	-	GGAACTC	p.P113fs
DLBC	TCGA-GS-A9TQ-01	SPTBN5	ENST00000320955.6	chr15	42171931:42172062:42172357:42172510:42173231:42173432,	42172358	42172510	42172481	42172482	Frame_Shift_Ins	-	ATGG	p.M861fs
DLBC	TCGA-FF-A7CR-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	469321:469422:470423:470525:472897:473008,	470424	470525	470463	470463	Frame_Shift_Del	C	-	p.K229fs
DLBC	TCGA-FF-A7CR-01	CYP3A43	ENST00000434806.1	chr7	99447601:99447722:99453213:99453341:99454455:99454522,	99453214	99453341	99453289	99453290	Frame_Shift_Ins	-	A	p.L249fs
DLBC	TCGA-G8-6907-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73681184	73681184	Frame_Shift_Del	A	-	p.V2509fs
DLBC	TCGA-GS-A9TU-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351721	89351722	Frame_Shift_Ins	-	T	p.T410fs
DLBC	TCGA-G8-6326-01	TTLL9	ENST00000375938.4,ENST00000535842.1,ENST00000310998.4,ENST00000375934.4	chr20	30497539:30497725:30510765:30510856:30512811:30512852,30507666:30507735:30510765:30510856:30512811:30512852,	30510766	30510856	30510797	30510798	Frame_Shift_Del	AT	-	p.202_202del
DLBC	TCGA-G8-6326-01	HLA-G	ENST00000428701.1,ENST00000376828.2,ENST00000360323.6,ENST00000478355.1	chr6	29795823:29796093:29796319:29796595:29797194:29797348,	29796320	29796595	29796435	29796435	Frame_Shift_Del	C	-	p.D153fs
DLBC	TCGA-GR-A4D9-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001270	11001271	Frame_Shift_Del	TA	-	p.640_641del
DLBC	TCGA-GR-A4D9-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001270	11001271	Frame_Shift_Del	TA	-	p.640_641del
DLBC	TCGA-FF-8042-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699094	17699095	Frame_Shift_Del	CT	-	p.944_944del
DLBC	TCGA-FF-8041-01	CIITA	ENST00000324288.8,ENST00000570546.1,ENST00000381835.5	chr16	11009502:11009507:11010223:11010316:11012296:11012383,	11010224	11010316	11010310	11010310	Frame_Shift_Del	C	-	p.T1019fs
DLBC	TCGA-GR-7353-01	PGGT1B	ENST00000514178.1,ENST00000419445.1	chr5	114552561:114552670:114557520:114557705:114566672:114566718,	114557521	114557705	114557642	114557643	Frame_Shift_Ins	-	A	p.S241fs
DLBC	TCGA-GR-7353-01	DLEC1	ENST00000452631.2,ENST00000308059.6,ENST00000478428.1,ENST00000346219.3	chr3	38159296:38159515:38161938:38162100:38163118:38163272,	38161939	38162100	38162039	38162042	Frame_Shift_Del	GAGA	-	p.1602_1603del
DLBC	TCGA-FF-A7CX-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120512133:120512367:120529582:120529705:120539619:120539955,	120529583	120529705	120529632	120529635	Frame_Shift_Del	ACAA	-	p.275_276del
DLBC	TCGA-FA-A86F-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101417	27101417	Frame_Shift_Del	C	-	p.R1566fs
DLBC	TCGA-FA-A86F-01	CTSH	ENST00000525807.1,ENST00000527138.1,ENST00000533777.1,ENST00000220166.5,ENST00000534533.1,ENST00000534237.1,ENST00000529612.1	chr15	79220054:79220123:79221753:79221835:79223792:79223848,	79221754	79221835	79221796	79221797	Frame_Shift_Ins	-	T	p.N196fs
DLBC	TCGA-GR-7351-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195505765	195505766	Frame_Shift_Ins	-	A	p.S4229fs
DLBC	TCGA-GR-7351-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195505762	195505763	Frame_Shift_Del	AG	-	p.4230_4230del
DLBC	TCGA-GR-7351-01	MCCC1	ENST00000495767.1,ENST00000497830.1,ENST00000265594.4,ENST00000539926.1,ENST00000492597.1,ENST00000476176.1	chr3	182751787:182751865:182755005:182755222:182756813:182756923,	182755006	182755222	182755074	182755074	Frame_Shift_Del	C	-	p.C509fs
DLBC	TCGA-GR-7351-01	RFC4	ENST00000296273.2,ENST00000417876.1,ENST00000392481.2	chr3	186507930:186508044:186508114:186508195:186509513:186509639,	186508115	186508195	186508121	186508122	Frame_Shift_Del	CA	-	p.292_293del
DLBC	TCGA-FA-A7Q1-01	TPP2	ENST00000466153.1,ENST00000376065.4,ENST00000482393.1,ENST00000376052.3	chr13	103309405:103309557:103315997:103316094:103317144:103317275,	103315998	103316094	103316014	103316017	Frame_Shift_Del	ATTT	-	p.1040_1041del
DLBC	TCGA-FA-A7Q1-01	CHD9	ENST00000564845.1,ENST00000566029.1,ENST00000564255.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53243691:53243725:53256555:53256667:53260277:53260315,	53256556	53256667	53256588	53256591	Frame_Shift_Del	AAAG	-	p.606_607del
DLBC	TCGA-GS-A9TW-01	CHEK2	ENST00000439200.1,ENST00000382580.2	chr22	29121230:29121355:29130390:29130715:29137756:29137771,29126443:29126536:29130390:29130715:29137756:29137771,	29130391	29130715	29130418	29130419	Frame_Shift_Ins	-	AT	p.A98fs
DLBC	TCGA-GS-A9TW-01	AASS	ENST00000358954.2	chr7	121721553:121721649:121726065:121726233:121731756:121731897,121722841:121722945:121726065:121726233:121731756:121731897,	121726066	121726233	121726174	121726174	Frame_Shift_Del	A	-	p.P693fs
DLBC	TCGA-GS-A9TW-01	HECTD1	ENST00000553700.1,ENST00000399332.1	chr14	31597071:31597212:31597817:31598654:31602443:31602620,	31597818	31598654	31598249	31598250	Frame_Shift_Ins	-	C	p.S1443fs
DLBC	TCGA-GS-A9TW-01	HECTD1	ENST00000553957.1	chr14	31597071:31597212:31597817:31598513:31602443:31602620,	31597818	31598513	31598249	31598250	Frame_Shift_Ins	-	C	p.S1443fs
DLBC	TCGA-GS-A9TW-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449643	85449643	Frame_Shift_Del	A	-	p.R357fs
DLBC	TCGA-GS-A9TX-01	KCNMB3	ENST00000392686.2	chr3	178957608:178957852:178960596:178961072:178962282:178962481,	178960597	178961072	178960904	178960904	Frame_Shift_Del	T	-	p.I210fs
DLBC	TCGA-GS-A9TZ-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910559	29910565	Frame_Shift_Del	CACATCC	-	p.33_35del
DLBC	TCGA-GS-A9TZ-01	PSMG2	ENST00000317615.6,ENST00000585331.2,ENST00000586445.1,ENST00000590217.1	chr18	12718515:12718634:12720508:12720682:12724497:12724519,	12720509	12720682	12720538	12720538	Frame_Shift_Del	C	-	p.S146fs
DLBC	TCGA-GS-A9TZ-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324195	31324201	Frame_Shift_Del	TACATGC	-	p.121_123del
DLBC	TCGA-GS-A9TZ-01	HLA-B	ENST00000434333.1,ENST00000412585.2	chr6	31323283:31323369:31323943:31324219:31324464:31324569,	31323944	31324219	31324195	31324201	Frame_Shift_Del	TACATGC	-	p.121_123del
DLBC	TCGA-FA-8693-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436374	16436375	Frame_Shift_Ins	-	G	p.P606fs
DLBC	TCGA-FA-8693-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000314490.11	chr2	121684936:121685042:121708818:121709021:121712820:121713006,	121708819	121709021	121708820	121708820	Frame_Shift_Del	C	-	p.G85fs
ESCA	TCGA-L5-A4OW-01	SUMO1	ENST00000409205.1	chr2	203079079:203079157:203084754:203084829:203103162:203103185,203079079:203079152:203084754:203084829:203103162:203103185,	203084755	203084829	203084799	203084799	Frame_Shift_Del	C	-	p.D15fs
ESCA	TCGA-LN-A49N-01	ETFDH	ENST00000307738.5,ENST00000511912.1	chr4	159620138:159620282:159624574:159624743:159627340:159627523,	159624575	159624743	159624578	159624579	Frame_Shift_Ins	-	T	p.I374fs
ESCA	TCGA-Z6-A9VB-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832417	61832417	Frame_Shift_Del	T	-	p.D2741fs
ESCA	TCGA-Z6-A9VB-01	AKR1C2	ENST00000604184.1,ENST00000604507.1,ENST00000460124.1,ENST00000407674.1,ENST00000421196.3,ENST00000455190.1	chr10	5042741:5042858:5043705:5043873:5045943:5046052,	5043706	5043873	5043707	5043707	Frame_Shift_Del	T	-	p.K84fs
ESCA	TCGA-VR-A8EX-01	ACAT1	ENST00000528370.1,ENST00000265838.4	chr11	108004947:108005043:108005868:108005969:108009624:108009768,	108005869	108005969	108005929	108005930	Frame_Shift_Ins	-	CT	p.A132fs
ESCA	TCGA-XP-A8T6-01	DMTF1	ENST00000449088.3,ENST00000447863.1,ENST00000394702.3,ENST00000394703.5,ENST00000413276.2,ENST00000430405.3,ENST00000412139.2,ENST00000425705.2,ENST00000579677.1,ENST00000453049.1,ENST00000331242.7,ENST00000414194.2,ENST00000446796.2,ENST00000584619.1,ENST00000547146.2,ENST00000434534.1	chr7	86794249:86794366:86795798:86795921:86800310:86800333,	86795799	86795921	86795900	86795901	Frame_Shift_Ins	-	T	p.I71fs
ESCA	TCGA-2H-A9GN-01	CD96	ENST00000438817.2,ENST00000352690.4,ENST00000494798.1	chr3	111286427:111286494:111297873:111298081:111304169:111304225,	111297874	111298081	111298030	111298031	Frame_Shift_Del	AG	-	p.249_250del
ESCA	TCGA-2H-A9GN-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.209_210del
ESCA	TCGA-IC-A6RE-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225567860:225568024:225569084:225569281:225576080:225576193,	225569085	225569281	225569205	225569206	Frame_Shift_Del	GA	-	p.4232_4232del
ESCA	TCGA-IC-A6RE-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606379	179606379	Frame_Shift_Del	T	-	p.T3861fs
ESCA	TCGA-LN-A4A4-01	EML3	ENST00000531557.1,ENST00000494176.2,ENST00000278845.4,ENST00000529309.1,ENST00000394773.2,ENST00000483199.1,ENST00000494448.1,ENST00000460939.1,ENST00000394776.4	chr11	62371584:62371673:62372584:62372652:62373113:62373154,	62372585	62372652	62372637	62372638	Frame_Shift_Del	CA	-	p.644_644del
ESCA	TCGA-IG-A5B8-01	AEBP1	ENST00000223357.3	chr7	44147227:44147299:44147407:44147530:44147605:44147683,	44147408	44147530	44147454	44147454	Frame_Shift_Del	A	-	p.R262fs
ESCA	TCGA-IG-A5B8-01	EMP1	ENST00000538364.1,ENST00000396301.3	chr12	13349719:13349806:13364402:13364522:13366412:13366509,	13364403	13364522	13364445	13364446	Frame_Shift_Ins	-	T	p.M1fs
ESCA	TCGA-VR-A8EZ-01	RPL30	ENST00000396070.2	chr8	99054034:99054078:99054872:99054946:99057170:99057316,	99054873	99054946	99054886	99054886	Frame_Shift_Del	A	-	p.I96fs
ESCA	TCGA-VR-A8EZ-01	RPL30	ENST00000287038.3,ENST00000521726.1,ENST00000521291.1	chr8	99054034:99054078:99054872:99055003:99057170:99057316,	99054873	99055003	99054886	99054886	Frame_Shift_Del	A	-	p.I96fs
ESCA	TCGA-L5-A43J-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425146	59425146	Frame_Shift_Del	G	-	p.Q160fs
ESCA	TCGA-L5-A43J-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134350640	134350640	Frame_Shift_Del	C	-	p.V1041fs
ESCA	TCGA-L5-A43J-01	OSGEPL1	ENST00000519810.1,ENST00000518114.1,ENST00000522700.1	chr2	190619898:190620286:190626145:190626386:190627410:190627493,	190626146	190626386	190626331	190626331	Frame_Shift_Del	A	-	p.K13fs
ESCA	TCGA-L5-A43J-01	FAF1	ENST00000487898.1,ENST00000396153.2,ENST00000371778.4	chr1	51204534:51204626:51210355:51210447:51253671:51253877,	51210356	51210447	51210386	51210386	Frame_Shift_Del	T	-	p.G144fs
ESCA	TCGA-L5-A43J-01	TFAP2A	ENST00000497266.1,ENST00000478375.1,ENST00000475264.1,ENST00000482890.1,ENST00000488193.1,ENST00000379608.3,ENST00000466073.1,ENST00000379604.2,ENST00000489805.1,ENST00000379613.3,ENST00000319516.4,ENST00000490875.1,ENST00000473652.1	chr6	10404900:10404972:10407025:10407077:10410133:10410327,	10407026	10407077	10407037	10407038	Frame_Shift_Del	AC	-	p.174_174del
ESCA	TCGA-L5-A43J-01	MAP3K2	ENST00000344908.5,ENST00000409947.1	chr2	128087496:128087584:128087967:128088081:128093445:128093545,	128087968	128088081	128088010	128088017	Frame_Shift_Del	CATATGAA	-	p.110_113del
ESCA	TCGA-L5-A43J-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000490904.2	chr6	161412875:161413115:161455290:161455481:161469647:161469835,	161455291	161455481	161455391	161455391	Frame_Shift_Del	C	-	p.S84fs
ESCA	TCGA-L5-A43J-01	HPX	ENST00000533856.1,ENST00000533369.1,ENST00000525057.1,ENST00000265983.3,ENST00000534800.1,ENST00000528348.1	chr11	6453135:6453247:6461696:6461768:6461901:6461954,6461394:6461516:6461696:6461768:6461901:6461954,	6461697	6461768	6461701	6461701	Frame_Shift_Del	A	-	p.K71fs
ESCA	TCGA-L5-A43J-01	USP35	ENST00000530546.1,ENST00000529308.1,ENST00000526425.1,ENST00000441408.2,ENST00000528910.1	chr11	77911178:77911280:77911695:77911854:77916887:77917081,	77911696	77911854	77911710	77911710	Frame_Shift_Del	C	-	p.I351fs
ESCA	TCGA-L5-A43J-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33345476:33345907:33346607:33346736:33356266:33356389,	33346608	33346736	33346694	33346694	Frame_Shift_Del	G	-	p.P186fs
ESCA	TCGA-L5-A43J-01	TECPR1	ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000483740.1,ENST00000490842.1	chr7	97858355:97858478:97860272:97860430:97860535:97860685,	97860273	97860430	97860399	97860399	Frame_Shift_Del	C	-	p.S719fs
ESCA	TCGA-L5-A43J-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996513	45996513	Frame_Shift_Del	G	-	p.P313fs
ESCA	TCGA-L5-A43J-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155734981	155734981	Frame_Shift_Del	G	-	p.P1428fs
ESCA	TCGA-L5-A43J-01	BIN1	ENST00000351659.3,ENST00000357970.3,ENST00000316724.5	chr2	127821508:127821594:127825738:127825831:127826499:127826607,	127825739	127825831	127825800	127825801	Frame_Shift_Ins	-	G	p.Q184fs
ESCA	TCGA-L5-A43J-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100376267:100376403:100377960:100378073:100379082:100379294,	100377961	100378073	100378027	100378028	Frame_Shift_Ins	-	A	p.S1301fs
ESCA	TCGA-L5-A43J-01	DDX19B	ENST00000566216.1,ENST00000393657.2,ENST00000568625.1,ENST00000568460.1,ENST00000563206.1,ENST00000563392.1,ENST00000288071.6	chr16	70349871:70350007:70351398:70351491:70358487:70358590,	70351399	70351491	70351424	70351425	Frame_Shift_Del	TA	-	p.107_108del
ESCA	TCGA-L5-A43J-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115986880	115986880	Frame_Shift_Del	A	-	p.L1075X
ESCA	TCGA-L5-A43J-01	RPS26	ENST00000552361.1	chr12	56435923:56435953:56436208:56436386:56437146:56437277,	56436209	56436386	56436335	56436336	Frame_Shift_Del	AT	-	p.43_44del
ESCA	TCGA-L5-A43J-01	HNF4G	ENST00000396419.1	chr8	76456049:76456214:76459821:76459916:76463622:76463729,76402323:76402443:76459821:76459916:76463622:76463729,	76459822	76459916	76459907	76459907	Frame_Shift_Del	A	-	p.M114fs
ESCA	TCGA-L5-A43J-01	GSR	ENST00000546342.1	chr8	30541604:30541716:30546677:30546836:30550485:30550572,30541604:30541716:30546677:30546836:30553896:30553990,	30546678	30546836	30546820	30546820	Frame_Shift_Del	T	-	p.K300fs
ESCA	TCGA-L5-A43J-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14474120:14474206:14477002:14477072:14479369:14479459,	14477003	14477072	14477004	14477004	Frame_Shift_Del	T	-	p.D2028fs
ESCA	TCGA-L5-A43J-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671157	186671157	Frame_Shift_Del	C	-	p.S5797fs
ESCA	TCGA-L5-A43J-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.P314fs
ESCA	TCGA-L5-A43J-01	ACAT1	ENST00000527942.1,ENST00000299355.6,ENST00000524833.1,ENST00000265838.4,ENST00000531853.1,ENST00000531813.1	chr11	108002633:108002681:108004546:108004664:108004947:108004971,	108004547	108004664	108004588	108004588	Frame_Shift_Del	T	-	p.S54fs
ESCA	TCGA-L5-A43J-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171800793:171800819:171809039:171809131:171821566:171821643,	171809040	171809131	171809111	171809111	Frame_Shift_Del	G	-	p.Y111fs
ESCA	TCGA-L5-A43J-01	MYBL1	ENST00000522677.3,ENST00000524176.2	chr8	67485598:67485741:67488241:67488610:67492367:67492598,	67488242	67488610	67488453	67488453	Frame_Shift_Del	T	-	p.N420fs
ESCA	TCGA-L5-A43J-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7632455:7632592:7635238:7635358:7635561:7635600,7633756:7633852:7635238:7635358:7635561:7635600,	7635239	7635358	7635292	7635292	Frame_Shift_Del	A	-	p.F1065fs
ESCA	TCGA-L5-A43J-01	TOPBP1	ENST00000260810.5	chr3	133377859:133377994:133379887:133379978:133380612:133380737,	133379888	133379978	133379900	133379900	Frame_Shift_Del	A	-	p.K25fs
ESCA	TCGA-L5-A43J-01	LRP1	ENST00000243077.3,ENST00000556356.1	chr12	57603474:57603651:57603811:57603952:57604089:57604263,	57603812	57603952	57603939	57603940	Frame_Shift_Ins	-	C	p.T4189fs
ESCA	TCGA-L5-A43J-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922881	150922882	Frame_Shift_Del	GA	-	p.2603_2603del
ESCA	TCGA-L5-A43J-01	VEGFC	ENST00000280193.2	chr4	177608974:177609081:177632652:177632804:177648931:177649001,	177632653	177632804	177632776	177632777	Frame_Shift_Ins	-	GA	p.Q194fs
ESCA	TCGA-L5-A43J-01	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335732	173335733	Frame_Shift_Ins	-	T	p.T225fs
ESCA	TCGA-ZR-A9CJ-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016221	1016224	Frame_Shift_Del	CAGA	-	p.2193_2194del
ESCA	TCGA-JY-A6F8-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3149731:3149934:3156019:3156146:3158798:3158926,	3156020	3156146	3156053	3156054	Frame_Shift_Ins	-	T	p.L1178fs
ESCA	TCGA-JY-A6F8-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29070455	29070456	Frame_Shift_Del	CA	-	p.558_558del
ESCA	TCGA-LN-A5U7-01	POGZ	ENST00000409503.1,ENST00000531094.1	chr1	151397430:151397537:151400298:151400490:151400598:151400889,	151400299	151400490	151400365	151400365	Frame_Shift_Del	C	-	p.V338fs
ESCA	TCGA-LN-A5U7-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151397430:151397537:151400298:151400517:151400598:151400889,	151400299	151400517	151400365	151400365	Frame_Shift_Del	C	-	p.V338fs
ESCA	TCGA-R6-A6DN-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117232235:117232711:117234983:117235112:117242879:117242917,	117234984	117235112	117235062	117235062	Frame_Shift_Del	A	-	p.H856fs
ESCA	TCGA-LN-A49M-01	PABPC4	ENST00000421687.2,ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000470443.1,ENST00000372862.3	chr1	40033422:40033518:40034473:40034611:40035266:40035361,	40034474	40034611	40034566	40034567	Frame_Shift_Del	AT	-	p.262_262del
ESCA	TCGA-LN-A49M-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55243392:55243417:55247291:55247432:55247756:55247903,	55247292	55247432	55247381	55247385	Frame_Shift_Del	CTAGT	-	p.583_584del
ESCA	TCGA-LN-A49S-01	TJP1	ENST00000356107.6,ENST00000346128.6	chr15	30011096:30011342:30011980:30012220:30012561:30012912,	30011981	30012220	30012102	30012102	Frame_Shift_Del	G	-	p.P961fs
ESCA	TCGA-IG-A8O2-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607509	46607510	Frame_Shift_Ins	-	A	p.A566fs
ESCA	TCGA-L5-A4OI-01	CCDC33	ENST00000558659.1,ENST00000398814.3,ENST00000321288.5	chr15	74572303:74572433:74573008:74573142:74574118:74574190,	74573009	74573142	74573101	74573101	Frame_Shift_Del	A	-	p.G327fs
ESCA	TCGA-L5-A4OI-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863768	47863768	Frame_Shift_Del	C	-	p.S3249fs
ESCA	TCGA-L5-A4OI-01	DNAJC21	ENST00000382021.2	chr5	34945865:34945908:34949647:34949782:34950274:34950447,	34949648	34949782	34949704	34949704	Frame_Shift_Del	A	-	p.G414fs
ESCA	TCGA-L5-A4OI-01	POLR3B	ENST00000539066.1,ENST00000228347.4	chr12	106824050:106824251:106826095:106826258:106827496:106827650,	106826096	106826258	106826212	106826213	Frame_Shift_Ins	-	G	p.C527fs
ESCA	TCGA-L5-A4OI-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179609513:179609580:179620001:179620202:179621173:179621332,	179620002	179620202	179620102	179620102	Frame_Shift_Del	T	-	p.I634fs
ESCA	TCGA-L5-A4OI-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3	chr12	105583768:105583933:105589038:105589127:105589222:105589279,	105589039	105589127	105589058	105589059	Frame_Shift_Ins	-	T	p.Q414fs
ESCA	TCGA-L5-A4OI-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
ESCA	TCGA-L5-A4OI-01	ENO4	ENST00000341276.5	chr10	118616002:118616193:118618500:118618649:118620304:118620474,	118618501	118618649	118618628	118618628	Frame_Shift_Del	A	-	p.T204fs
ESCA	TCGA-L5-A4OI-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
ESCA	TCGA-L5-A4OI-01	CNTNAP3	ENST00000297668.6,ENST00000358144.2	chr9	39099907:39100147:39102493:39102712:39103740:39103911,	39102494	39102712	39102541	39102541	Frame_Shift_Del	G	-	p.P903fs
ESCA	TCGA-L5-A4OI-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
ESCA	TCGA-L5-A4OI-01	GATA3	ENST00000379328.3	chr10	8100361:8100804:8105955:8106101:8111435:8111559,	8105956	8106101	8105978	8105979	Frame_Shift_Ins	-	G	p.C267fs
ESCA	TCGA-L5-A4OI-01	GATA3	ENST00000346208.3	chr10	8100361:8100804:8105958:8106101:8111435:8111559,	8105959	8106101	8105978	8105979	Frame_Shift_Ins	-	G	p.C267fs
ESCA	TCGA-L5-A4OI-01	SUSD3	ENST00000375469.1	chr9	95831381:95831430:95838065:95838254:95840127:95840275,	95838066	95838254	95838089	95838089	Frame_Shift_Del	C	-	p.L37fs
ESCA	TCGA-L5-A4OI-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547749	165547749	Frame_Shift_Del	A	-	p.L358fs
ESCA	TCGA-L5-A4OI-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70594418:70594578:70617265:70617464:70650274:70650439,	70617266	70617464	70617403	70617403	Frame_Shift_Del	T	-	p.L496X
ESCA	TCGA-L5-A4OI-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315787	208315787	Frame_Shift_Del	G	-	p.H465fs
ESCA	TCGA-L5-A4OI-01	NUB1	ENST00000483358.1,ENST00000468404.1,ENST00000413040.2,ENST00000355851.4,ENST00000470229.1,ENST00000566856.1,ENST00000568733.1,ENST00000470316.1	chr7	151042433:151042552:151046158:151046326:151048509:151048568,	151046159	151046326	151046320	151046320	Frame_Shift_Del	A	-	p.L117fs
ESCA	TCGA-L5-A4OI-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452519	58452519	Frame_Shift_Del	T	-	p.N1024fs
ESCA	TCGA-L5-A4OI-01	CA10	ENST00000570565.1,ENST00000340813.6,ENST00000451037.2,ENST00000285273.4,ENST00000442502.2,ENST00000575181.1,ENST00000571371.1	chr17	49824992:49825178:50008349:50008492:50149678:50149753,	50008350	50008492	50008356	50008357	Frame_Shift_Ins	-	C	p.G91fs
ESCA	TCGA-L5-A4OI-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728643	100728644	Frame_Shift_Ins	-	A	p.E228fs
ESCA	TCGA-L5-A4OI-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158026	27158026	Frame_Shift_Del	A	-	p.A83fs
ESCA	TCGA-L5-A4OI-01	CHAF1A	ENST00000301280.5	chr19	4405908:4405959:4408899:4409756:4418016:4418073,	4408900	4409756	4409561	4409564	Frame_Shift_Del	CCTT	-	p.255_256del
ESCA	TCGA-L5-A4OI-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112461	36112461	Frame_Shift_Del	A	-	p.Q683fs
ESCA	TCGA-L5-A4OI-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351590	74351590	Frame_Shift_Del	A	-	p.Y117fs
ESCA	TCGA-L5-A4OI-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696716	17696716	Frame_Shift_Del	C	-	p.V151fs
ESCA	TCGA-L5-A4OI-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
ESCA	TCGA-L5-A4OI-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
ESCA	TCGA-L5-A4OI-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62637665:62637816:62645869:62645988:62647969:62648227,	62645870	62645988	62645896	62645897	Frame_Shift_Ins	-	C	p.S517fs
ESCA	TCGA-L5-A4OI-01	LCN2	ENST00000372998.1,ENST00000470902.1,ENST00000488391.1,ENST00000540948.1,ENST00000373013.2,ENST00000494317.1,ENST00000373017.1,ENST00000277480.2	chr9	130913947:130913996:130914184:130914304:130914461:130914563,	130914185	130914304	130914272	130914272	Frame_Shift_Del	A	-	p.Q148fs
ESCA	TCGA-L5-A4OI-01	CCDC136	ENST00000297788.4	chr7	128454702:128454973:128455667:128455985:128457811:128457918,	128455668	128455985	128455793	128455794	Frame_Shift_Del	GT	-	p.1057_1057del
ESCA	TCGA-L5-A4OI-01	NELFE	ENST00000492539.1	chr6	31924732:31924787:31926084:31926231:31926668:31926731,	31926085	31926231	31926206	31926206	Frame_Shift_Del	G	-	p.G7fs
ESCA	TCGA-L5-A4OI-01	NELFE	ENST00000492185.1,ENST00000481121.1,ENST00000491139.1,ENST00000441998.1,ENST00000444811.2	chr6	31924732:31924787:31926148:31926231:31926668:31926731,	31926149	31926231	31926206	31926206	Frame_Shift_Del	G	-	p.G7fs
ESCA	TCGA-L5-A4OI-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26093113	26093113	Frame_Shift_Del	C	-	p.V272fs
ESCA	TCGA-L5-A4OI-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.H509fs
ESCA	TCGA-L5-A4OI-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.H509fs
ESCA	TCGA-L5-A4OI-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
ESCA	TCGA-L5-A4OI-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
ESCA	TCGA-L5-A4OI-01	CD46	ENST00000469535.1,ENST00000441839.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1	chr1	207925401:207925654:207930358:207930547:207930884:207930987,	207930359	207930547	207930454	207930454	Frame_Shift_Del	A	-	p.C64X
ESCA	TCGA-L5-A4OI-01	R3HDM2	ENST00000402412.1,ENST00000347140.3	chr12	57696958:57697000:57704046:57704246:57789531:57789601,	57704047	57704246	57704152	57704152	Frame_Shift_Del	T	-	p.L21fs
ESCA	TCGA-L5-A4OI-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
ESCA	TCGA-L5-A4OI-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.M38fs
ESCA	TCGA-L5-A4OI-01	CAPG	ENST00000409724.1,ENST00000453973.1,ENST00000409670.1,ENST00000263867.4,ENST00000471064.1,ENST00000409921.1	chr2	85622017:85622081:85622660:85622749:85625142:85625254,	85622661	85622749	85622671	85622671	Frame_Shift_Del	G	-	p.P324fs
ESCA	TCGA-L5-A4OI-01	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44986659:44986784:45000622:45000952:45017424:45017658,	45000623	45000952	45000845	45000845	Frame_Shift_Del	G	-	p.Y29fs
ESCA	TCGA-L5-A4OI-01	KPNA3	ENST00000261667.3	chr13	50276521:50276616:50279756:50279919:50280233:50280305,	50279757	50279919	50279819	50279819	Frame_Shift_Del	T	-	p.N437fs
ESCA	TCGA-L5-A4OI-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.P558fs
ESCA	TCGA-L5-A4OI-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
ESCA	TCGA-L5-A4OI-01	TWISTNB	ENST00000222567.5	chr7	19738187:19738350:19739694:19739903:19744401:19744543,	19739695	19739903	19739713	19739713	Frame_Shift_Del	C	-	p.G196fs
ESCA	TCGA-L5-A4OI-01	SLC29A3	ENST00000373189.5	chr10	73103965:73104048:73111318:73111545:73115837:73116000,	73111319	73111545	73111425	73111425	Frame_Shift_Del	T	-	p.G163fs
ESCA	TCGA-L5-A4OI-01	POLR1C	ENST00000488601.2,ENST00000372389.3,ENST00000304004.3	chr6	43487803:43487923:43488012:43488165:43488669:43488786,43487806:43487923:43488012:43488165:43488362:43488441,	43488013	43488165	43488038	43488038	Frame_Shift_Del	C	-	p.I176fs
ESCA	TCGA-L5-A4OI-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766232	70766233	Frame_Shift_Ins	-	T	p.M310fs
ESCA	TCGA-L5-A4OI-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.I104fs
ESCA	TCGA-L5-A4OI-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530505	150530506	Frame_Shift_Ins	-	G	p.F754fs
ESCA	TCGA-L5-A4OI-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000597793.1,ENST00000598325.1,ENST00000601093.1	chr19	50363350:50363440:50363524:50363593:50363870:50363982,	50363525	50363593	50363527	50363527	Frame_Shift_Del	G	-	p.M414fs
ESCA	TCGA-L5-A4OI-01	TMEM50A	ENST00000480937.1	chr1	25664813:25664947:25666964:25667070:25678116:25678145,25664813:25664947:25666964:25667070:25669451:25669564,	25666965	25667070	25667024	25667024	Frame_Shift_Del	G	-	p.W16fs
ESCA	TCGA-L5-A4OI-01	COL13A1	ENST00000398978.3,ENST00000398971.3,ENST00000479733.1,ENST00000356340.3,ENST00000398974.3,ENST00000398964.3,ENST00000398973.3,ENST00000398972.3	chr10	71655305:71655332:71658452:71658518:71662503:71662611,71657230:71657287:71658452:71658518:71662503:71662611,	71658453	71658518	71658500	71658500	Frame_Shift_Del	A	-	p.I254fs
ESCA	TCGA-L5-A4OI-01	ALDOA	ENST00000395248.1	chr16	30077196:30077248:30078205:30078359:30078554:30078567,30077507:30077565:30078205:30078359:30078554:30078611,30075754:30075826:30078205:30078359:30078554:30078567,	30078206	30078359	30078291	30078291	Frame_Shift_Del	C	-	p.F24fs
ESCA	TCGA-L5-A4OI-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
ESCA	TCGA-L5-A4OI-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
ESCA	TCGA-L5-A4OI-01	CD79A	ENST00000221972.3	chr19	42383059:42383359:42383604:42383723:42384736:42384769,	42383605	42383723	42383610	42383610	Frame_Shift_Del	C	-	p.P128fs
ESCA	TCGA-L5-A4OI-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99857048:99857220:99858616:99858840:99860426:99860615,	99858617	99858840	99858807	99858807	Frame_Shift_Del	G	-	p.P104fs
ESCA	TCGA-L5-A4OI-01	PON2	ENST00000491069.1	chr7	95041635:95041789:95045483:95045609:95053826:95053897,	95045484	95045609	95045559	95045560	Frame_Shift_Ins	-	A	p.S66_V67delinsX
ESCA	TCGA-L5-A4OI-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000493290.1	chr7	95041635:95041789:95045553:95045609:95053826:95053897,	95045554	95045609	95045559	95045560	Frame_Shift_Ins	-	A	p.S66_V67delinsX
ESCA	TCGA-L5-A4OI-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000564954.1,ENST00000348261.5	chr16	1245028:1245083:1245431:1245565:1245925:1246023,	1245432	1245565	1245456	1245456	Frame_Shift_Del	T	-	p.A145fs
ESCA	TCGA-L5-A4OI-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88486457:88486609:88487546:88487752:88490664:88490776,	88487547	88487752	88487681	88487681	Frame_Shift_Del	T	-	p.I1059fs
ESCA	TCGA-L5-A4OI-01	PPP2R3C	ENST00000557278.1,ENST00000555644.1,ENST00000555630.1,ENST00000261475.5,ENST00000554563.1,ENST00000557773.1,ENST00000554361.1,ENST00000556254.1	chr14	35579730:35579835:35585815:35585943:35591107:35591155,	35585816	35585943	35585935	35585935	Frame_Shift_Del	T	-	p.S23fs
ESCA	TCGA-L5-A4OI-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485090	35485090	Frame_Shift_Del	T	-	p.M98fs
ESCA	TCGA-L5-A4OI-01	SUCO	ENST00000263688.3,ENST00000610051.1,ENST00000367723.4,ENST00000608151.1	chr1	172548341:172548407:172554157:172554226:172554997:172555088,	172554158	172554226	172554204	172554204	Frame_Shift_Del	A	-	p.A515fs
ESCA	TCGA-L5-A4OI-01	B9D1	ENST00000575478.1,ENST00000575403.1,ENST00000268841.6,ENST00000395615.1,ENST00000477478.2,ENST00000574508.2,ENST00000440841.1,ENST00000261499.4,ENST00000395616.3,ENST00000477683.1,ENST00000461069.2	chr17	19251096:19251193:19261152:19261264:19263632:19263701,	19261153	19261264	19261171	19261171	Frame_Shift_Del	T	-	p.A96fs
ESCA	TCGA-L5-A4OI-01	USHBP1	ENST00000252597.3,ENST00000594190.1,ENST00000324554.5	chr19	17373637:17373799:17374810:17374959:17375054:17375156,	17374811	17374959	17374897	17374898	Frame_Shift_Ins	-	T	p.K39fs
ESCA	TCGA-L5-A4OI-01	IFT172	ENST00000507184.1,ENST00000260570.3	chr2	27682244:27682389:27682575:27682696:27683881:27683960,	27682576	27682696	27682634	27682634	Frame_Shift_Del	C	-	p.D862fs
ESCA	TCGA-L5-A4OI-01	TMPRSS11A	ENST00000334830.7	chr4	68797710:68797778:68810227:68810355:68812167:68812282,	68810228	68810355	68810346	68810346	Frame_Shift_Del	T	-	p.K48fs
ESCA	TCGA-L5-A4OI-01	TMPRSS11A	ENST00000508048.1,ENST00000396188.2	chr4	68797710:68797778:68810236:68810355:68812167:68812282,	68810237	68810355	68810346	68810346	Frame_Shift_Del	T	-	p.K48fs
ESCA	TCGA-L5-A4OI-01	DCAKD	ENST00000588499.1,ENST00000342350.5,ENST00000452796.2,ENST00000593094.1	chr17	43101869:43102092:43107459:43107547:43111554:43111758,	43107460	43107547	43107517	43107518	Frame_Shift_Ins	-	G	p.L116fs
ESCA	TCGA-L5-A4OI-01	TIE1	ENST00000538015.1,ENST00000372476.3,ENST00000441333.2	chr1	43772510:43772666:43772812:43772944:43773102:43773243,	43772813	43772944	43772910	43772910	Frame_Shift_Del	C	-	p.C246fs
ESCA	TCGA-L5-A4OI-01	EAPP	ENST00000250454.3,ENST00000554792.1	chr14	34993902:34994013:34998563:34998681:35002649:35002733,	34998564	34998681	34998660	34998660	Frame_Shift_Del	T	-	p.K125fs
ESCA	TCGA-L5-A4OI-01	DPP7	ENST00000463619.1,ENST00000483783.1,ENST00000371579.2	chr9	140006141:140006206:140006324:140006481:140006563:140006621,	140006325	140006481	140006327	140006327	Frame_Shift_Del	C	-	p.G402fs
ESCA	TCGA-L5-A4OI-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433820:10433950:10434050:10434242:10439317:10439728,	10434051	10434242	10434093	10434093	Frame_Shift_Del	G	-	p.G320fs
ESCA	TCGA-L5-A4OI-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542776	24542776	Frame_Shift_Del	T	-	p.Y79fs
ESCA	TCGA-L5-A4OI-01	IGF1R	ENST00000558762.1,ENST00000559925.1,ENST00000268035.6,ENST00000558898.1	chr15	99439985:99440134:99442705:99442850:99451913:99452128,	99442706	99442850	99442809	99442809	Frame_Shift_Del	A	-	p.L402fs
ESCA	TCGA-L5-A4OI-01	TAC4	ENST00000326219.5	chr17	47917211:47917271:47918913:47918946:47921425:47921519,47915670:47916035:47918913:47918946:47921425:47921519,	47918914	47918946	47918915	47918915	Frame_Shift_Del	T	-	p.A84fs
ESCA	TCGA-L5-A4OI-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280135	114280135	Frame_Shift_Del	G	-	p.R3454fs
ESCA	TCGA-L5-A4OI-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
ESCA	TCGA-L5-A4OI-01	TPD52	ENST00000518517.1,ENST00000524194.1,ENST00000379097.3,ENST00000379096.5,ENST00000523319.2,ENST00000521354.1,ENST00000537855.1	chr8	80954854:80954903:80963761:80963863:80965516:80965588,	80963762	80963863	80963777	80963777	Frame_Shift_Del	T	-	p.K164fs
ESCA	TCGA-L5-A4OI-01	HDAC11	ENST00000433119.1	chr3	13524963:13525064:13538235:13538352:13540012:13540055,13524966:13525064:13538235:13538352:13542212:13542289,	13538236	13538352	13538267	13538268	Frame_Shift_Ins	-	C	p.I95fs
ESCA	TCGA-L5-A4OI-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46120030:46120085:46121398:46122553:46135263:46135411,	46121399	46122553	46121400	46121400	Frame_Shift_Del	A	-	p.L624fs
ESCA	TCGA-L5-A4OI-01	FBXO25	ENST00000518240.1,ENST00000350302.3,ENST00000276326.5	chr8	381340:381444:382885:382935:385614:385700,	382886	382935	382898	382898	Frame_Shift_Del	A	-	p.E84fs
ESCA	TCGA-L5-A4OI-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171510968:171511368:171514617:171514826:171519224:171519379,	171514618	171514826	171514769	171514769	Frame_Shift_Del	A	-	p.P1636fs
ESCA	TCGA-L5-A4OI-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073232	197073232	Frame_Shift_Del	T	-	p.I1717fs
ESCA	TCGA-L5-A4OI-01	PPM1K	ENST00000508256.1,ENST00000608933.1	chr4	89186152:89186287:89189341:89189486:89189892:89190058,	89189342	89189486	89189444	89189444	Frame_Shift_Del	C	-	p.Q251fs
ESCA	TCGA-L5-A4OI-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
ESCA	TCGA-L5-A4OI-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299560	107299560	Frame_Shift_Del	T	-	p.E467fs
ESCA	TCGA-L5-A4OI-01	ZNF839	ENST00000262236.5,ENST00000442396.2,ENST00000559185.1,ENST00000559155.1,ENST00000558490.1,ENST00000558850.1,ENST00000561251.1,ENST00000560568.1	chr14	102800890:102800983:102802025:102802175:102805152:102805167,	102802026	102802175	102802052	102802052	Frame_Shift_Del	T	-	p.P512fs
ESCA	TCGA-L5-A4OI-01	BTF3L4	ENST00000472944.2	chr1	52522003:52522051:52530496:52530610:52549011:52549172,	52530497	52530610	52530571	52530571	Frame_Shift_Del	A	-	p.L43fs
ESCA	TCGA-L5-A4OI-01	INTS10	ENST00000397977.3,ENST00000523143.1,ENST00000523846.1	chr8	19682348:19682483:19683936:19684070:19687916:19688037,	19683937	19684070	19684060	19684060	Frame_Shift_Del	A	-	p.E377fs
ESCA	TCGA-L5-A4OI-01	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505296	56505296	Frame_Shift_Del	A	-	p.Q367fs
ESCA	TCGA-L5-A4OI-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109644723:109644796:109661244:109661397:109672058:109672259,	109661245	109661397	109661386	109661386	Frame_Shift_Del	T	-	p.D861fs
ESCA	TCGA-L5-A4OI-01	ENKUR	ENST00000496261.2,ENST00000376363.1	chr10	25284574:25284798:25288329:25288475:25304788:25304889,	25288330	25288475	25288338	25288339	Frame_Shift_Del	AG	-	p.72_72del
ESCA	TCGA-L5-A4OI-01	CELF2	ENST00000537122.1,ENST00000609870.1	chr10	11259387:11259470:11291115:11291164:11299700:11299835,11207490:11207645:11291115:11291164:11299700:11299835,	11291116	11291164	11291153	11291153	Frame_Shift_Del	A	-	p.E131fs
ESCA	TCGA-L5-A4OI-01	SCCPDH	ENST00000366510.3	chr1	246923258:246923378:246923472:246923529:246927547:246927659,	246923473	246923529	246923522	246923522	Frame_Shift_Del	A	-	p.Q328fs
ESCA	TCGA-L5-A4OI-01	ARMC4	ENST00000537576.1,ENST00000305242.5,ENST00000545014.1	chr10	28229491:28229734:28233150:28233360:28233744:28233891,	28233151	28233360	28233164	28233164	Frame_Shift_Del	C	-	p.G577fs
ESCA	TCGA-L5-A4OI-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393488	65393489	Frame_Shift_Ins	-	G	p.P211fs
ESCA	TCGA-L5-A4OI-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P235fs
ESCA	TCGA-L5-A4OI-01	KIF6	ENST00000287152.7,ENST00000538893.1,ENST00000373215.3,ENST00000373216.3,ENST00000458470.1	chr6	39563829:39564036:39580964:39581094:39602624:39602734,	39580965	39581094	39580993	39580993	Frame_Shift_Del	A	-	p.L204fs
ESCA	TCGA-L5-A4OI-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044069	108044069	Frame_Shift_Del	T	-	p.S548fs
ESCA	TCGA-L5-A4OI-01	MCTP1	ENST00000515393.1,ENST00000514040.1,ENST00000508509.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8	chr5	94046522:94046632:94050481:94050591:94114814:94114868,	94050482	94050591	94050578	94050578	Frame_Shift_Del	T	-	p.K875fs
ESCA	TCGA-L5-A4OI-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654702	167654702	Frame_Shift_Del	C	-	p.L51fs
ESCA	TCGA-L5-A4OI-01	LEPROTL1	ENST00000321250.8,ENST00000518192.1	chr8	29959455:29959489:29961815:29962002:29994787:29995213,29959455:29959489:29961815:29962002:29963261:29963544,	29961816	29962002	29961841	29961841	Frame_Shift_Del	T	-	p.L39fs
ESCA	TCGA-L5-A4OI-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74899384:74899458:74900333:74900504:74901250:74901415,	74900334	74900504	74900438	74900438	Frame_Shift_Del	C	-	p.C219fs
ESCA	TCGA-L5-A4OI-01	DLGAP5	ENST00000395425.2,ENST00000247191.2	chr14	55621334:55621524:55625239:55625459:55629688:55629793,	55625240	55625459	55625371	55625371	Frame_Shift_Del	T	-	p.N581fs
ESCA	TCGA-L5-A4OI-01	WDR41	ENST00000515253.1,ENST00000507029.1,ENST00000296679.4,ENST00000502528.1,ENST00000414719.2	chr5	76728717:76729112:76732085:76732219:76733160:76733249,	76732086	76732219	76732211	76732212	Frame_Shift_Ins	-	A	p.N368_M369delinsX
ESCA	TCGA-L5-A4OI-01	EPS15L1	ENST00000602022.1	chr19	16466049:16466662:16472589:16472795:16487932:16488065,16466049:16466662:16472589:16472795:16495939:16496022,	16472590	16472795	16472690	16472690	Frame_Shift_Del	T	-	p.K829fs
ESCA	TCGA-L5-A4OI-01	KIAA1755	ENST00000279024.4,ENST00000496900.1	chr20	36859603:36859727:36867929:36868127:36868983:36870331,	36867930	36868127	36868084	36868084	Frame_Shift_Del	G	-	p.S532fs
ESCA	TCGA-L5-A4OI-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173389	154173390	Frame_Shift_Ins	-	C	p.A223fs
ESCA	TCGA-L5-A4OI-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173389	154173390	Frame_Shift_Ins	-	C	p.A223fs
ESCA	TCGA-L5-A4OI-01	SLC35F5	ENST00000409106.1,ENST00000245680.2	chr2	114493353:114493435:114500268:114500456:114501289:114501371,	114500269	114500456	114500277	114500278	Frame_Shift_Del	AA	-	p.248_248del
ESCA	TCGA-L5-A4OI-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551297	Frame_Shift_Del	AA	-	p.907_907del
ESCA	TCGA-L5-A4OI-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551297	Frame_Shift_Del	AA	-	p.907_907del
ESCA	TCGA-L5-A8NS-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927260	41927260	Frame_Shift_Del	C	-	p.S112fs
ESCA	TCGA-L5-A8NS-01	SLC22A5	ENST00000415928.1,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1	chr5	131719838:131719993:131721019:131721191:131722716:131722843,	131721020	131721191	131721070	131721071	Frame_Shift_Del	GT	-	p.234_235del
ESCA	TCGA-L5-A8NJ-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920757	107920758	Frame_Shift_Ins	-	A	p.N125fs
ESCA	TCGA-L5-A8NJ-01	BTN2A1	ENST00000429381.1,ENST00000312541.5,ENST00000469185.1,ENST00000541522.1	chr6	26459708:26460056:26463471:26463753:26465412:26465634,	26463472	26463753	26463595	26463595	Frame_Shift_Del	T	-	p.V185fs
ESCA	TCGA-L5-A8NQ-01	CSE1L	ENST00000469700.1,ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47708582:47708664:47710676:47710823:47711268:47711500,	47710677	47710823	47710696	47710697	Frame_Shift_Ins	-	A	p.E823fs
ESCA	TCGA-R6-A8W8-01	CPED1	ENST00000310396.5	chr7	120907268:120907356:120911337:120911484:120935493:120935652,	120911338	120911484	120911387	120911388	Frame_Shift_Ins	-	A	p.A924fs
ESCA	TCGA-XP-A8T8-01	GRHL1	ENST00000439493.1	chr2	10095043:10095230:10098914:10099093:10101174:10101211,	10098915	10099093	10098951	10098951	Frame_Shift_Del	G	-	p.P81fs
ESCA	TCGA-XP-A8T8-01	GRHL1	ENST00000324883.5,ENST00000464418.1,ENST00000324907.9,ENST00000405379.2,ENST00000472167.1	chr2	10095043:10095230:10098914:10098985:10101174:10101211,	10098915	10098985	10098951	10098951	Frame_Shift_Del	G	-	p.P81fs
ESCA	TCGA-XP-A8T8-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098371	144098371	Frame_Shift_Del	C	-	p.K205fs
ESCA	TCGA-L5-A8NT-01	PSMD3	ENST00000264639.4	chr17	38152435:38152591:38153582:38153633:38153756:38153864,	38153583	38153633	38153633	38153634	Frame_Shift_Ins	-	GTAA	p.E509fs
ESCA	TCGA-L5-A8NT-01	DPY19L2	ENST00000324472.4,ENST00000439061.2,ENST00000413230.2	chr12	63954130:63954442:63963003:63963129:63964537:63964637,	63963004	63963129	63963039	63963040	Frame_Shift_Del	AT	-	p.697_698del
ESCA	TCGA-JY-A6FE-01	STYXL1	ENST00000460184.2,ENST00000474328.1,ENST00000360591.3,ENST00000340062.5,ENST00000451157.1	chr7	75657959:75658021:75659738:75659842:75677129:75677271,	75659739	75659842	75659797	75659798	Frame_Shift_Ins	-	A	p.I15fs
ESCA	TCGA-JY-A6FE-01	STYXL1	ENST00000359697.3	chr7	75657959:75658021:75659738:75659845:75677129:75677271,75657959:75658021:75659738:75659845:75676979:75677281,	75659739	75659845	75659797	75659798	Frame_Shift_Ins	-	A	p.I15fs
ESCA	TCGA-JY-A6FE-01	CACNB3	ENST00000548279.1	chr12	49217561:49217586:49218043:49218156:49218451:49218480,	49218044	49218156	49218137	49218143	Frame_Shift_Del	AAACAGG	-	p.129_131del
ESCA	TCGA-JY-A6FE-01	CACNB3	ENST00000550391.1,ENST00000301050.2,ENST00000550168.1,ENST00000549226.1,ENST00000550064.1,ENST00000540990.1,ENST00000550483.1,ENST00000536187.2,ENST00000552022.1,ENST00000548860.1,ENST00000547392.1,ENST00000551544.1,ENST00000547818.1	chr12	49217561:49217586:49218040:49218156:49218451:49218480,	49218041	49218156	49218137	49218143	Frame_Shift_Del	AAACAGG	-	p.129_131del
ESCA	TCGA-2H-A9GL-01	PLCB1	ENST00000378641.3	chr20	8770824:8770908:8782702:8782820:8862268:8865547,	8782703	8782820	8782721	8782724	Frame_Shift_Del	TTCT	-	p.1147_1148del
ESCA	TCGA-L5-A4OE-01	MICAL2	ENST00000527546.1,ENST00000537344.1,ENST00000379612.3	chr11	12257723:12257792:12260982:12261132:12278331:12278456,12257723:12257792:12260982:12261132:12270730:12270793,	12260983	12261132	12261023	12261024	Frame_Shift_Ins	-	TT	p.E702fs
ESCA	TCGA-L5-A4OE-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65418719:65418870:65420381:65420594:65423205:65423419,	65420382	65420594	65420509	65420510	Frame_Shift_Del	TG	-	p.718_718del
ESCA	TCGA-JY-A6FD-01	DHODH	ENST00000572887.1,ENST00000219240.4	chr16	72050922:72051005:72055022:72055210:72056260:72056374,	72055023	72055210	72055078	72055078	Frame_Shift_Del	G	-	p.A191fs
ESCA	TCGA-IG-A4QS-01	GUCY1A2	ENST00000282249.2,ENST00000526355.2	chr11	106647164:106647308:106680718:106681204:106810185:106810904,	106680719	106681204	106680972	106680972	Frame_Shift_Del	T	-	p.H480fs
ESCA	TCGA-IG-A4QS-01	ST8SIA4	ENST00000231461.5	chr5	100142638:100147833:100191806:100192100:100222046:100222304,	100191807	100192100	100191934	100191934	Frame_Shift_Del	A	-	p.W224X
ESCA	TCGA-IG-A4QS-01	EXT1	ENST00000437196.1,ENST00000378204.2	chr8	118819455:118819616:118825110:118825200:118830673:118830769,	118825111	118825200	118825191	118825191	Frame_Shift_Del	T	-	p.S548fs
ESCA	TCGA-IG-A4QS-01	FAM102B	ENST00000370035.3,ENST00000405454.1	chr1	109143187:109143308:109148844:109148874:109154799:109154916,	109148845	109148874	109148850	109148850	Frame_Shift_Del	A	-	p.L88X
ESCA	TCGA-LN-A7HZ-01	UBAC2	ENST00000403766.3	chr13	99853145:99853193:99890680:99890808:99896085:99896205,	99890681	99890808	99890703	99890703	Frame_Shift_Del	C	-	p.A60fs
ESCA	TCGA-R6-A6Y0-01	PPT2	ENST00000375143.2,ENST00000324816.6,ENST00000445576.2,ENST00000395523.1,ENST00000375137.2,ENST00000414204.1,ENST00000361568.2	chr6	32122363:32122554:32122806:32122960:32123544:32123560,32122363:32122554:32122806:32122960:32123464:32123560,	32122807	32122960	32122851	32122854	Frame_Shift_Del	GAGA	-	p.82_83del
ESCA	TCGA-LN-A49P-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173838	126173838	Frame_Shift_Del	G	-	p.P533fs
ESCA	TCGA-V5-A7RC-01	SPAG17	ENST00000336338.5	chr1	118574368:118574490:118579392:118579506:118581914:118581965,	118579393	118579506	118579442	118579443	Frame_Shift_Ins	-	T	p.N1128fs
ESCA	TCGA-V5-A7RC-01	SPAG17	ENST00000486589.1	chr1	118574368:118574490:118579248:118579506:118581914:118581965,	118579249	118579506	118579442	118579443	Frame_Shift_Ins	-	T	p.N1128fs
ESCA	TCGA-V5-A7RC-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648545	85648546	Frame_Shift_Ins	-	A	p.L594fs
ESCA	TCGA-V5-A7RC-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114751	57114752	Frame_Shift_Del	AG	-	p.188_188del
ESCA	TCGA-V5-A7RC-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114751	57114752	Frame_Shift_Del	AG	-	p.188_188del
ESCA	TCGA-L5-A4ON-01	WASF3	ENST00000335327.5	chr13	27246008:27246126:27250685:27250861:27255190:27255457,	27250686	27250861	27250861	27250862	Frame_Shift_Ins	-	GT	p.R239fs
ESCA	TCGA-2H-A9GR-01	UPK3B	ENST00000443097.2,ENST00000394849.1	chr7	76139931:76140054:76140219:76140369:76140973:76141199,	76140220	76140369	76140306	76140307	Frame_Shift_Del	TG	-	p.112_113del
ESCA	TCGA-R6-A6XG-01	PSG11	ENST00000401740.1,ENST00000320078.7	chr19	43518232:43519522:43522921:43523200:43528842:43529208,	43522922	43523200	43522939	43522939	Frame_Shift_Del	A	-	p.V231fs
ESCA	TCGA-R6-A6XG-01	DBF4	ENST00000431138.1	chr7	87505914:87506093:87507367:87507448:87514293:87514473,	87507368	87507448	87507388	87507389	Frame_Shift_Ins	-	A	p.E23fs
ESCA	TCGA-R6-A6XG-01	DBF4	ENST00000486925.1,ENST00000430279.1,ENST00000265728.1	chr7	87505914:87506093:87507367:87507540:87514293:87514473,	87507368	87507540	87507388	87507389	Frame_Shift_Ins	-	A	p.E23fs
ESCA	TCGA-R6-A6XG-01	EVI5	ENST00000492613.1,ENST00000370331.1,ENST00000540033.1	chr1	93091350:93091491:93101758:93101893:93128976:93129009,93091350:93091491:93101758:93101893:93131495:93131512,	93101759	93101893	93101861	93101861	Frame_Shift_Del	A	-	p.V460fs
ESCA	TCGA-L5-A893-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047735	96047736	Frame_Shift_Ins	-	A	p.W117fs
ESCA	TCGA-L5-A893-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384333	109384333	Frame_Shift_Del	T	-	p.D2446fs
ESCA	TCGA-2H-A9GF-01	TANC1	ENST00000263635.6,ENST00000454300.1	chr2	160031463:160031695:160032862:160033029:160035066:160035674,	160032863	160033029	160032893	160032893	Frame_Shift_Del	T	-	p.I589fs
ESCA	TCGA-VR-A8EY-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579563	7579563	Frame_Shift_Del	C	-	p.D42fs
ESCA	TCGA-JY-A93D-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100205103:100205285:100286425:100286560:100287308:100287482,	100286426	100286560	100286533	100286533	Frame_Shift_Del	T	-	p.G874fs
ESCA	TCGA-JY-A93D-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971025	21971026	Frame_Shift_Del	GC	-	p.126_126del
ESCA	TCGA-JY-A93D-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971025	21971026	Frame_Shift_Del	GC	-	p.126_126del
ESCA	TCGA-R6-A8WC-01	HNRNPH3	ENST00000441000.2	chr10	70091878:70091973:70096955:70097090:70097614:70097753,70091873:70091992:70096955:70097090:70098259:70098399,70091878:70091973:70096955:70097090:70098896:70098958,	70096956	70097090	70096998	70096999	Frame_Shift_Del	AT	-	p.7_7del
ESCA	TCGA-R6-A8WC-01	CSMD1	ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2823296:2823476:2824091:2824268:2830638:2830821,	2824092	2824268	2824141	2824141	Frame_Shift_Del	C	-	p.H3018fs
ESCA	TCGA-R6-A8WC-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47273470:47273538:47275255:47275342:47279202:47279292,	47275256	47275342	47275284	47275285	Frame_Shift_Ins	-	AT	p.D448fs
ESCA	TCGA-XP-A8T7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577062	7577062	Frame_Shift_Del	T	-	p.G293fs
ESCA	TCGA-XP-A8T7-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186665038	186665039	Frame_Shift_Ins	-	A	p.Q3758fs
ESCA	TCGA-VR-AA7D-01	ACHE	ENST00000442452.1	chr7	100488789:100488959:100489954:100490264:100490785:100491525,	100489955	100490264	100490031	100490032	Frame_Shift_Ins	-	G	p.S493fs
ESCA	TCGA-VR-AA7D-01	ACHE	ENST00000419336.2	chr7	100488789:100488959:100489954:100490175:100490785:100491525,	100489955	100490175	100490031	100490032	Frame_Shift_Ins	-	G	p.S493fs
ESCA	TCGA-VR-AA7D-01	ACHE	ENST00000412389.1,ENST00000241069.5,ENST00000411582.1,ENST00000428317.1,ENST00000302913.4	chr7	100488789:100488959:100489954:100490439:100490785:100491525,	100489955	100490439	100490031	100490032	Frame_Shift_Ins	-	G	p.S493fs
ESCA	TCGA-VR-AA7D-01	NPHP3	ENST00000471702.1,ENST00000337331.5,ENST00000490993.1	chr3	132413670:132413809:132415574:132415657:132416103:132416206,	132415575	132415657	132415603	132415604	Frame_Shift_Ins	-	A	p.V715fs
ESCA	TCGA-L5-A4OR-01	RPL7A	ENST00000315731.4,ENST00000463740.1,ENST00000489392.1,ENST00000468019.1,ENST00000323345.6	chr9	136217451:136217582:136217856:136217926:136218116:136218227,	136217857	136217926	136217908	136217909	Frame_Shift_Ins	-	A	p.Y226fs
ESCA	TCGA-L5-A4OR-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018731	1018732	Frame_Shift_Ins	-	TGGCC	p.T1357fs
ESCA	TCGA-L5-A4OR-01	ALOX15B	ENST00000572022.1,ENST00000380173.2,ENST00000380183.4,ENST00000573359.1,ENST00000571240.1	chr17	7946106:7946202:7948146:7948319:7948555:7948702,	7948147	7948319	7948301	7948301	Frame_Shift_Del	C	-	p.S277fs
ESCA	TCGA-L5-A4OR-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579377	7579378	Frame_Shift_Ins	-	GT	p.Q104fs
ESCA	TCGA-VR-A8EP-01	IQCG	ENST00000265239.6,ENST00000453254.1,ENST00000416896.1,ENST00000455191.1	chr3	197659044:197659173:197665418:197665651:197670648:197670922,	197665419	197665651	197665569	197665569	Frame_Shift_Del	A	-	p.L122fs
ESCA	TCGA-L5-A8NW-01	TYMP	ENST00000425169.1	chr22	50966940:50967039:50967564:50967767:50967924:50968148,50966016:50966146:50967564:50967767:50967924:50968148,	50967565	50967767	50967742	50967742	Frame_Shift_Del	A	-	p.R81fs
ESCA	TCGA-L5-A8NW-01	IFRD2	ENST00000429673.2,ENST00000468737.1,ENST00000336089.4,ENST00000436390.1,ENST00000474556.1,ENST00000417626.2,ENST00000484043.1	chr3	50327611:50327725:50327818:50327903:50327990:50328110,	50327819	50327903	50327897	50327898	Frame_Shift_Ins	-	C	p.D126fs
ESCA	TCGA-LN-A4A1-01	C17orf58	ENST00000334461.7	chr17	65987245:65988219:65989016:65989351:65989539:65989640,	65989017	65989351	65989212	65989213	Frame_Shift_Ins	-	A	p.M17fs
ESCA	TCGA-IG-A3I8-01	TNIK	ENST00000284483.8,ENST00000470834.1,ENST00000369326.5,ENST00000436636.2,ENST00000357327.5	chr3	170843700:170843940:170846502:170846667:170855979:170856168,	170846503	170846667	170846630	170846630	Frame_Shift_Del	G	-	p.P549fs
ESCA	TCGA-LN-A49K-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579321	7579322	Frame_Shift_Del	CA	-	p.122_123del
ESCA	TCGA-L5-A4OF-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357595	50357595	Frame_Shift_Del	A	-	p.L449fs
ESCA	TCGA-V5-AASW-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194140607:194140696:194146070:194146258:194147803:194147981,	194146071	194146258	194146150	194146150	Frame_Shift_Del	A	-	p.I1079fs
ESCA	TCGA-V5-AASW-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000560764.1,ENST00000537840.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57524909:57525054:57526240:57526305:57535669:57535713,	57526241	57526305	57526275	57526276	Frame_Shift_Ins	-	CT	p.T335fs
ESCA	TCGA-L5-A8NM-01	COX20	ENST00000366528.3	chr1	244998960:244999058:245005245:245005360:245005500:245005560,244999786:244999822:245005245:245005360:245005496:245005560,	245005246	245005360	245005347	245005347	Frame_Shift_Del	T	-	p.H48fs
ESCA	TCGA-L5-A8NM-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705894	35705895	Frame_Shift_Del	AA	-	p.883_883del
ESCA	TCGA-L5-A8NM-01	RFX2	ENST00000586806.1	chr19	6016100:6016282:6026173:6026248:6039990:6040252,6016100:6016282:6026173:6026248:6110403:6110457,	6026174	6026248	6026217	6026218	Frame_Shift_Ins	-	T	p.S185fs
ESCA	TCGA-L5-A8NM-01	ABCA10	ENST00000519732.1	chr17	67161104:67161224:67170421:67170535:67170747:67170918,67161104:67161224:67170421:67170535:67171546:67171654,	67170422	67170535	67170425	67170425	Frame_Shift_Del	A	-	p.I1054fs
ESCA	TCGA-L5-A8NM-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1	chr4	57244313:57244630:57248642:57248763:57250235:57250465,	57248643	57248763	57248651	57248652	Frame_Shift_Ins	-	T	p.Q115fs
ESCA	TCGA-L5-A8NM-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108338	102108338	Frame_Shift_Del	T	-	p.W159fs
ESCA	TCGA-L5-A8NM-01	TTC5	ENST00000554157.1,ENST00000258821.3,ENST00000423949.2,ENST00000383029.3	chr14	20763470:20763685:20763866:20764013:20764548:20764605,	20763867	20764013	20763965	20763966	Frame_Shift_Del	GA	-	p.249_249del
ESCA	TCGA-L5-A8NM-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.E611fs
ESCA	TCGA-L5-A8NM-01	ATP1A1	ENST00000488733.1,ENST00000295598.5	chr1	116915890:116916145:116926635:116926746:116927404:116927464,	116926636	116926746	116926693	116926693	Frame_Shift_Del	A	-	p.G23fs
ESCA	TCGA-L5-A8NM-01	WWP2	ENST00000359154.2,ENST00000570104.1,ENST00000544162.1,ENST00000448661.1,ENST00000356003.2,ENST00000569174.1,ENST00000542271.1	chr16	69905706:69905834:69921941:69922152:69942663:69942753,	69921942	69922152	69921970	69921971	Frame_Shift_Ins	-	C	p.D244fs
ESCA	TCGA-L5-A8NM-01	UBE3C	ENST00000348165.5	chr7	156961741:156961816:156962997:156963144:156967612:156967728,	156962998	156963144	156963108	156963109	Frame_Shift_Ins	-	T	p.L102fs
ESCA	TCGA-L5-A8NM-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852454:182852503:182852654:182852770:182853747:182853948,	182852655	182852770	182852698	182852698	Frame_Shift_Del	C	-	p.T1063fs
ESCA	TCGA-L5-A8NM-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
ESCA	TCGA-L5-A8NM-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
ESCA	TCGA-L5-A8NM-01	DSN1	ENST00000373750.4,ENST00000447406.1,ENST00000426836.1,ENST00000373745.3	chr20	35396371:35396445:35399275:35399596:35402064:35402123,35396371:35396445:35399275:35399596:35399827:35399876,	35399276	35399596	35399448	35399448	Frame_Shift_Del	T	-	p.G62fs
ESCA	TCGA-L5-A8NM-01	DSN1	ENST00000480153.1	chr20	35396371:35396445:35399275:35399876:35402064:35402123,	35399276	35399876	35399448	35399448	Frame_Shift_Del	T	-	p.G62fs
ESCA	TCGA-L5-A8NM-01	ZMPSTE24	ENST00000372759.3	chr1	40751596:40751701:40756525:40756669:40758116:40758293,	40756526	40756669	40756543	40756543	Frame_Shift_Del	T	-	p.C359fs
ESCA	TCGA-L5-A8NM-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462464	39462464	Frame_Shift_Del	A	-	p.D33fs
ESCA	TCGA-L5-A8NM-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000597793.1,ENST00000598325.1,ENST00000601093.1	chr19	50363350:50363440:50363524:50363593:50363870:50363982,	50363525	50363593	50363527	50363527	Frame_Shift_Del	G	-	p.M414fs
ESCA	TCGA-L5-A8NM-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410403	3410404	Frame_Shift_Ins	-	C	p.A1440fs
ESCA	TCGA-L5-A8NM-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788023	Frame_Shift_Del	T	-	p.V1116fs
ESCA	TCGA-L5-A8NM-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730307	1730308	Frame_Shift_Ins	-	C	p.D393fs
ESCA	TCGA-L5-A8NM-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417669	40417670	Frame_Shift_Ins	-	C	p.L385fs
ESCA	TCGA-L5-A8NM-01	MAPK9	ENST00000539014.1,ENST00000397072.3,ENST00000393362.4,ENST00000347470.4,ENST00000455781.1,ENST00000343111.6,ENST00000452135.2,ENST00000393360.3,ENST00000425491.2	chr5	179688683:179688822:179691780:179691839:179696279:179696409,	179691781	179691839	179691803	179691803	Frame_Shift_Del	T	-	p.T97fs
ESCA	TCGA-L5-A8NM-01	MARK3	ENST00000303622.9,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000561071.1,ENST00000416682.2,ENST00000216288.7,ENST00000561225.1,ENST00000558223.1,ENST00000429436.2	chr14	103871470:103871604:103894723:103894777:103915255:103915304,	103894724	103894777	103894732	103894732	Frame_Shift_Del	A	-	p.I84fs
ESCA	TCGA-L5-A8NM-01	ARL17A	ENST00000336125.5,ENST00000329240.4,ENST00000337845.7,ENST00000573185.1,ENST00000570550.1	chr17	44648124:44648235:44653540:44653705:44656966:44657017,	44653541	44653705	44653639	44653639	Frame_Shift_Del	T	-	p.K17fs
ESCA	TCGA-L5-A8NM-01	MSL1	ENST00000579565.1,ENST00000577454.1,ENST00000578648.1	chr17	38279537:38279633:38282435:38282659:38285497:38285513,	38282436	38282659	38282534	38282535	Frame_Shift_Del	AG	-	p.26_26del
ESCA	TCGA-L5-A8NM-01	COG6	ENST00000455146.3,ENST00000356576.4,ENST00000416691.1	chr13	40251604:40251716:40253674:40253757:40254111:40254182,	40253675	40253757	40253676	40253677	Frame_Shift_Ins	-	T	p.D181fs
ESCA	TCGA-L5-A8NM-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470303	70470303	Frame_Shift_Del	T	-	p.K351fs
ESCA	TCGA-L5-A8NM-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204055014:204055112:204058517:204058634:204062024:204062114,	204058518	204058634	204058623	204058623	Frame_Shift_Del	T	-	p.S2313fs
ESCA	TCGA-L5-A8NM-01	CAMSAP2	ENST00000358823.2,ENST00000236925.4	chr1	200813909:200813997:200816337:200816420:200816767:200816837,	200816338	200816420	200816338	200816339	Frame_Shift_Ins	-	G	p.S370fs
ESCA	TCGA-L5-A8NM-01	MEIOB	ENST00000460494.1	chr16	1911985:1912117:1918107:1918185:1921993:1922096,	1918108	1918185	1918176	1918176	Frame_Shift_Del	T	-	p.M1fs
ESCA	TCGA-L5-A8NM-01	GNL3	ENST00000474423.1	chr3	52720064:52720121:52720784:52720843:52721261:52721399,52720192:52720441:52720784:52720843:52721261:52721399,	52720785	52720843	52720836	52720836	Frame_Shift_Del	A	-	p.Q22fs
ESCA	TCGA-L5-A8NM-01	CABIN1	ENST00000398319.2,ENST00000445422.1,ENST00000263119.5,ENST00000454754.1	chr22	24445552:24445682:24447286:24447436:24451335:24451622,	24447287	24447436	24447362	24447362	Frame_Shift_Del	A	-	p.R244fs
ESCA	TCGA-L5-A8NM-01	ITLN1	ENST00000326245.3	chr1	160846328:160846606:160849100:160849204:160850377:160850498,	160849101	160849204	160849201	160849202	Frame_Shift_Ins	-	C	p.E230fs
ESCA	TCGA-L5-A8NM-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678784	52678784	Frame_Shift_Del	T	-	p.I279fs
ESCA	TCGA-L5-A8NM-01	EMC10	ENST00000601780.1,ENST00000376918.3	chr19	50984140:50984234:50985117:50985204:50985405:50985419,	50985118	50985204	50985132	50985132	Frame_Shift_Del	G	-	p.L231fs
ESCA	TCGA-L5-A8NM-01	RMDN3	ENST00000560588.1,ENST00000260385.6,ENST00000558232.1,ENST00000338376.3,ENST00000558777.1	chr15	41029485:41029539:41029825:41029924:41030162:41030240,	41029826	41029924	41029894	41029894	Frame_Shift_Del	T	-	p.T386fs
ESCA	TCGA-L5-A8NM-01	SEZ6L2	ENST00000562159.1	chr16	29899860:29900046:29906579:29906781:29908142:29908232,	29906580	29906781	29906705	29906706	Frame_Shift_Ins	-	G	p.R243fs
ESCA	TCGA-L5-A8NM-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
ESCA	TCGA-L5-A8NM-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47570301:47570439:47571471:47571651:47571805:47571894,	47571472	47571651	47571590	47571591	Frame_Shift_Ins	-	C	p.A173fs
ESCA	TCGA-L5-A8NM-01	ATRNL1	ENST00000423111.2,ENST00000355044.3,ENST00000303745.7	chr10	117308967:117309046:117486757:117486865:117607387:117607502,	117486758	117486865	117486834	117486837	Frame_Shift_Del	AACA	-	p.1291_1292del
ESCA	TCGA-L5-A8NM-01	DDX43	ENST00000539829.1	chr6	74109956:74110086:74111581:74111713:74114412:74114494,74109956:74110086:74111581:74111713:74115401:74115558,	74111582	74111713	74111695	74111696	Frame_Shift_Ins	-	A	p.Q184fs
ESCA	TCGA-L5-A8NM-01	EML2	ENST00000245925.3,ENST00000586195.1,ENST00000587152.1,ENST00000536630.1,ENST00000399594.3,ENST00000586902.1,ENST00000588000.1,ENST00000589876.1,ENST00000590580.1,ENST00000588308.1	chr19	46124811:46124895:46129962:46130097:46133208:46133290,46127977:46128076:46129962:46130097:46136118:46136229,46127977:46128076:46129962:46130097:46133208:46133290,	46129963	46130097	46129994	46129994	Frame_Shift_Del	C	-	p.G438fs
ESCA	TCGA-L5-A8NM-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148464710:148464841:148480874:148480982:148481062:148481169,	148480875	148480982	148480914	148480914	Frame_Shift_Del	A	-	p.H374fs
ESCA	TCGA-L5-A8NM-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899920	Frame_Shift_Del	A	-	p.D131fs
ESCA	TCGA-L5-A8NM-01	GAPDH	ENST00000396861.1,ENST00000492719.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646085:6646176:6646266:6646382:6646474:6646556,	6646267	6646382	6646278	6646278	Frame_Shift_Del	G	-	p.Q113fs
ESCA	TCGA-L7-A56G-01	TMEM254	ENST00000472622.1	chr10	81841596:81841700:81841900:81841973:81850552:81850694,	81841901	81841973	81841942	81841943	Frame_Shift_Ins	-	T	p.Y102fs
ESCA	TCGA-L7-A56G-01	TMEM254	ENST00000463029.1,ENST00000372273.3,ENST00000467529.1,ENST00000372281.3,ENST00000483732.1,ENST00000450179.1	chr10	81841596:81841700:81841900:81841960:81850552:81850694,	81841901	81841960	81841942	81841943	Frame_Shift_Ins	-	T	p.Y102fs
ESCA	TCGA-L7-A56G-01	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71800476:71801025:71802247:71802448:71804098:71804152,	71802248	71802448	71802435	71802435	Frame_Shift_Del	T	-	p.E1104fs
ESCA	TCGA-L5-A88W-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124332920:124333415:124335177:124335306:124338132:124338266,	124335178	124335306	124335278	124335279	Frame_Shift_Ins	-	T	p.S1344fs
ESCA	TCGA-L5-A88W-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7776887:7777054:7780583:7780721:7785108:7785222,	7780584	7780721	7780587	7780587	Frame_Shift_Del	C	-	p.A654fs
ESCA	TCGA-L5-A88W-01	DONSON	ENST00000457359.1,ENST00000442660.1,ENST00000303071.5,ENST00000303113.6,ENST00000417871.1,ENST00000437395.1	chr21	34950547:34950750:34951655:34951868:34953607:34953693,	34951656	34951868	34951684	34951718	Frame_Shift_Del	CAGATGTTAAATACAGCAGTTGGCTCGTGTGGATA	-	p.501_512del
ESCA	TCGA-L5-A88W-01	DONSON	ENST00000453626.1	chr21	34950547:34950750:34951655:34951723:34953607:34953693,	34951656	34951723	34951684	34951718	Frame_Shift_Del	CAGATGTTAAATACAGCAGTTGGCTCGTGTGGATA	-	p.501_512del
ESCA	TCGA-LN-A49X-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573291	242573292	Frame_Shift_Ins	-	C	p.A94fs
ESCA	TCGA-LN-A49X-01	KRT14	ENST00000476662.1,ENST00000167586.6	chr17	39739807:39739928:39740011:39740173:39740508:39740665,	39740012	39740173	39740052	39740058	Frame_Shift_Del	TCTGCCA	-	p.294_296del
ESCA	TCGA-LN-A4MQ-01	ARF4	ENST00000486310.1,ENST00000303436.6,ENST00000496292.1,ENST00000463880.1	chr3	57561349:57561400:57563042:57563114:57582800:57582925,57561349:57561400:57563042:57563114:57569624:57569734,	57563043	57563114	57563091	57563092	Frame_Shift_Ins	-	CGAT	p.S94fs
ESCA	TCGA-LN-A4MQ-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726383	71726384	Frame_Shift_Ins	-	T	p.K722fs
ESCA	TCGA-L5-A43I-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.P574fs
ESCA	TCGA-IG-A625-01	LRP8	ENST00000347547.2,ENST00000480045.1,ENST00000306052.6	chr1	53712689:53712728:53715051:53715228:53716361:53716534,	53715052	53715228	53715213	53715214	Frame_Shift_Ins	-	AA	p.D898fs
ESCA	TCGA-L5-A88S-01	POC5	ENST00000510798.1,ENST00000428202.2,ENST00000503835.1,ENST00000515285.1,ENST00000380475.2,ENST00000446329.2	chr5	74998429:74998635:75001528:75001612:75003561:75003700,	75001529	75001612	75001600	75001601	Frame_Shift_Ins	-	CA	p.E79fs
ESCA	TCGA-Z6-A8JD-01	MLXIP	ENST00000319080.7	chr12	122616838:122616930:122617894:122618534:122619770:122619892,	122617895	122618534	122618301	122618301	Frame_Shift_Del	C	-	p.T500fs
ESCA	TCGA-JY-A6FG-01	TUBB	ENST00000435534.1	chr6	30688133:30688340:30690313:30690422:30690694:30690805,	30690314	30690422	30690400	30690401	Frame_Shift_Del	TG	-	p.48_48del
ESCA	TCGA-JY-A6FG-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268876	115268877	Frame_Shift_Ins	-	AATC	p.F578fs
ESCA	TCGA-JY-A6FG-01	PKP1	ENST00000352845.3,ENST00000367324.3,ENST00000263946.3	chr1	201293555:201293709:201294068:201294255:201294881:201294966,	201294069	201294255	201294233	201294239	Frame_Shift_Del	ATCATCA	-	p.687_689del
ESCA	TCGA-JY-A6FG-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44217411:44217571:44217757:44217891:44218027:44218336,	44217758	44217891	44217808	44217811	Frame_Shift_Del	CAGA	-	p.188_189del
ESCA	TCGA-JY-A6FG-01	KDM1A	ENST00000542151.1,ENST00000400181.4	chr1	23345987:23346440:23356961:23357127:23370919:23370979,	23356962	23357127	23357117	23357118	Frame_Shift_Ins	-	G	p.E169fs
ESCA	TCGA-IG-A97H-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39701366:39701531:39703387:39703568:39705218:39705355,	39703388	39703568	39703470	39703471	Frame_Shift_Ins	-	A	p.T1399fs
ESCA	TCGA-IG-A97H-01	UGT3A1	ENST00000507113.1,ENST00000503189.1,ENST00000274278.3	chr5	35957289:35957521:35965487:35966019:35968120:35968235,	35965488	35966019	35965642	35965642	Frame_Shift_Del	G	-	p.P230fs
ESCA	TCGA-JY-A6FH-01	RNH1	ENST00000397615.2,ENST00000534797.1,ENST00000397614.1,ENST00000354420.2,ENST00000525701.1,ENST00000525522.1,ENST00000356187.5,ENST00000438658.2,ENST00000397604.3,ENST00000533410.1	chr11	494560:494778:494882:495053:497970:498141,	494883	495053	494990	494991	Frame_Shift_Ins	-	T	p.N397fs
ESCA	TCGA-JY-A6FH-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016549	1016561	Frame_Shift_Del	AGAGGCTGTAGCT	-	p.2081_2085del
ESCA	TCGA-L5-A8NI-01	DCBLD1	ENST00000296955.8,ENST00000338728.5,ENST00000533453.1,ENST00000368503.4	chr6	117824946:117825142:117840978:117841113:117842687:117842739,	117840979	117841113	117841079	117841079	Frame_Shift_Del	T	-	p.G142fs
ESCA	TCGA-L5-A8NI-01	CYP4F22	ENST00000601005.2,ENST00000269703.3	chr19	15648682:15648804:15651260:15651528:15654781:15654848,	15651261	15651528	15651362	15651381	Frame_Shift_Del	CGGCGGATGGGCGGAGGTTC	-	p.258_264del
ESCA	TCGA-LN-A8I1-01	SREBF2	ENST00000361204.4	chr22	42273232:42273425:42273945:42274127:42276719:42276996,	42273946	42274127	42274003	42274004	Frame_Shift_Del	GT	-	p.546_546del
ESCA	TCGA-R6-A6XQ-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345574	23345577	Frame_Shift_Del	GAGA	-	p.185_186del
ESCA	TCGA-L5-A4OT-01	SFI1	ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000432498.1,ENST00000417682.2,ENST00000382162.3,ENST00000540643.1	chr22	32009339:32009516:32009587:32009841:32010774:32010846,	32009588	32009841	32009640	32009641	Frame_Shift_Del	AG	-	p.932_932del
ESCA	TCGA-LN-A49R-01	ESRP2	ENST00000473183.2	chr16	68266479:68266590:68266663:68266718:68267229:68267328,	68266664	68266718	68266687	68266688	Frame_Shift_Ins	-	T	p.K229fs
ESCA	TCGA-LN-A49R-01	COL17A1	ENST00000369733.3,ENST00000433822.1,ENST00000353479.5	chr10	105791961:105792048:105792431:105792512:105792663:105792726,	105792432	105792512	105792467	105792468	Frame_Shift_Ins	-	CA	p.G1468fs
ESCA	TCGA-LN-A49R-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417725	40417726	Frame_Shift_Ins	-	CTCGG	p.V404fs
ESCA	TCGA-LN-A49R-01	DAZAP2	ENST00000549555.1,ENST00000604900.1,ENST00000449723.3,ENST00000425012.2	chr12	51632686:51632704:51634126:51634245:51634654:51634713,	51634127	51634245	51634217	51634218	Frame_Shift_Ins	-	T	p.Y35fs
ESCA	TCGA-L5-A4OJ-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186092082:186092352:186094735:186094926:186097209:186097423,	186094736	186094926	186094842	186094843	Frame_Shift_Ins	-	A	p.W4202fs
ESCA	TCGA-L5-A4OJ-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576921	7576925	Frame_Shift_Del	GCAGT	-	p.308_309del
ESCA	TCGA-L5-A4OJ-01	FAM86B2	ENST00000262365.4,ENST00000351291.4,ENST00000527331.1	chr8	12285242:12285315:12286141:12286407:12286489:12286623,	12286142	12286407	12286231	12286234	Frame_Shift_Del	CTGT	-	p.217_218del
ESCA	TCGA-LN-A5U6-01	CD9	ENST00000536586.1	chr12	6309040:6309238:6309549:6309731:6334591:6334700,	6309550	6309731	6309666	6309667	Frame_Shift_Ins	-	T	p.M1fs
ESCA	TCGA-LN-A5U6-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579497	7579498	Frame_Shift_Del	GA	-	p.64_64del
ESCA	TCGA-LN-A5U6-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000479818.1,ENST00000449103.1	chr22	50715057:50715133:50715270:50715335:50716019:50716167,	50715271	50715335	50715316	50715316	Frame_Shift_Del	A	-	p.L1739fs
ESCA	TCGA-V5-A7RE-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60630600:60630705:60639746:60639941:60642629:60642858,	60639747	60639941	60639886	60639887	Frame_Shift_Ins	-	A	p.Q1234fs
ESCA	TCGA-V5-A7RE-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430251	115430252	Frame_Shift_Ins	-	A	p.E399fs
ESCA	TCGA-V5-A7RE-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436912	72436913	Frame_Shift_Ins	-	A	p.G378fs
ESCA	TCGA-IG-A3YC-01	ALDH2	ENST00000549106.1	chr12	112237709:112237867:112241662:112241777:112247346:112247434,112235881:112236046:112241662:112241777:112247346:112247434,	112241663	112241777	112241777	112241778	Frame_Shift_Del	TG	-	p.507_507del
ESCA	TCGA-VR-A8Q7-01	AMPD2	ENST00000528667.1,ENST00000528454.1,ENST00000369840.2,ENST00000393688.3,ENST00000476688.2,ENST00000256578.3,ENST00000342115.4,ENST00000358729.4	chr1	110171948:110172112:110172417:110172538:110172854:110173028,	110172418	110172538	110172511	110172511	Frame_Shift_Del	C	-	p.N706fs
ESCA	TCGA-VR-A8Q7-01	AMPD2	ENST00000526301.1	chr1	110171948:110172112:110172421:110172538:110172854:110173028,	110172422	110172538	110172511	110172511	Frame_Shift_Del	C	-	p.N706fs
ESCA	TCGA-R6-A6Y2-01	CADPS2	ENST00000462699.1	chr7	122056114:122056218:122076413:122076434:122078394:122078430,	122076414	122076434	122076417	122076417	Frame_Shift_Del	T	-	p.T832fs
ESCA	TCGA-JY-A938-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145772875	145772875	Frame_Shift_Del	C	-	p.S532fs
ESCA	TCGA-JY-A938-01	CYTH4	ENST00000248901.6,ENST00000462927.1	chr22	37695266:37695347:37696947:37697060:37699294:37699336,	37696948	37697060	37696983	37696995	Frame_Shift_Del	CCCAGAAGATAGA	-	p.157_161del
ESCA	TCGA-JY-A938-01	PPP6R1	ENST00000412770.2,ENST00000587283.1	chr19	55751193:55751279:55751366:55751482:55751603:55751668,	55751367	55751482	55751414	55751414	Frame_Shift_Del	T	-	p.N477fs
ESCA	TCGA-JY-A938-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637688	52637701	Frame_Shift_Del	ACGAATTTTAATAA	-	p.872_877del
ESCA	TCGA-JY-A6FA-01	YEATS2	ENST00000305135.5	chr3	183469860:183470041:183471913:183472153:183474315:183474477,	183471914	183472153	183472028	183472029	Frame_Shift_Ins	-	T	p.H422fs
ESCA	TCGA-LN-A4A6-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859371	48859372	Frame_Shift_Ins	-	A	p.P235fs
ESCA	TCGA-VR-A8EQ-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548603	165548604	Frame_Shift_Ins	-	T	p.K73fs
ESCA	TCGA-LN-A4A2-01	PLXNB2	ENST00000496720.1	chr22	50722261:50722419:50722560:50722673:50723001:50723034,	50722561	50722673	50722580	50722589	Frame_Shift_Del	ATTCTTGCCG	-	p.746_749del
ESCA	TCGA-LN-A4A2-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50722261:50722419:50722560:50722642:50723001:50723034,	50722561	50722642	50722580	50722589	Frame_Shift_Del	ATTCTTGCCG	-	p.746_749del
ESCA	TCGA-2H-A9GI-01	FAH	ENST00000539156.1,ENST00000558627.1,ENST00000261755.5,ENST00000407106.1,ENST00000561421.1	chr15	80460605:80460658:80464490:80464590:80465355:80465486,	80464491	80464590	80464492	80464493	Frame_Shift_Ins	-	T	p.A203fs
ESCA	TCGA-2H-A9GI-01	PHACTR2	ENST00000402863.3,ENST00000397980.3,ENST00000367582.3,ENST00000440869.2,ENST00000451827.2	chr6	143999309:143999346:144033152:144033320:144070121:144070202,	144033153	144033320	144033170	144033170	Frame_Shift_Del	G	-	p.K21fs
ESCA	TCGA-2H-A9GI-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579579	7579580	Frame_Shift_Ins	-	GGCAAGGG	p.P36fs
ESCA	TCGA-2H-A9GI-01	CDCA2	ENST00000380665.3,ENST00000330560.3,ENST00000521098.2	chr8	25346067:25346205:25360888:25361060:25364025:25365389,	25360889	25361060	25360941	25360942	Frame_Shift_Ins	-	ATCTTTAT	p.K575fs
ESCA	TCGA-IG-A50L-01	EMC3	ENST00000487465.1,ENST00000245046.2,ENST00000497557.1,ENST00000429759.1	chr3	10015311:10015393:10016067:10016172:10018640:10018734,	10016068	10016172	10016090	10016091	Frame_Shift_Ins	-	A	p.M130fs
ESCA	TCGA-IG-A50L-01	FARSA	ENST00000586280.1	chr19	13041036:13041155:13041242:13041563:13044363:13044494,	13041243	13041563	13041426	13041427	Frame_Shift_Ins	-	A	p.M95fs
ESCA	TCGA-JY-A93F-01	IFNGR1	ENST00000367739.4,ENST00000543628.1	chr6	137518968:137519776:137522017:137522145:137524635:137524822,	137522018	137522145	137522074	137522074	Frame_Shift_Del	A	-	p.Y269fs
ESCA	TCGA-JY-A93F-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097621	27097622	Frame_Shift_Ins	-	A	p.N1070fs
ESCA	TCGA-L5-A4OO-01	ITGA4	ENST00000397033.2,ENST00000465522.1,ENST00000233573.6	chr2	182339686:182339793:182339885:182340015:182343483:182343551,	182339886	182340015	182339903	182339904	Frame_Shift_Ins	-	A	p.W148fs
ESCA	TCGA-V5-AASV-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646207	215646208	Frame_Shift_Del	TT	-	p.131_131del
ESCA	TCGA-V5-AASV-01	POLR1C	ENST00000428025.2,ENST00000372389.3,ENST00000304004.3,ENST00000372344.2	chr6	43487443:43487576:43487803:43487923:43488012:43488050,	43487804	43487923	43487822	43487825	Frame_Shift_Del	AGAT	-	p.134_135del
ESCA	TCGA-L5-A891-01	NCEH1	ENST00000424772.1,ENST00000538775.1	chr3	172363412:172363482:172365651:172365904:172428636:172428842,	172365652	172365904	172365675	172365675	Frame_Shift_Del	C	-	p.S155fs
ESCA	TCGA-VR-AA7B-01	ZC3H13	ENST00000378921.2,ENST00000242848.4	chr13	46533617:46533781:46537976:46538177:46539414:46539564,	46537977	46538177	46538007	46538010	Frame_Shift_Del	TTTC	-	p.1548_1549del
ESCA	TCGA-VR-AA7B-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580047	7580048	Frame_Shift_Ins	-	AAGT	p.N1208fs
ESCA	TCGA-VR-AA7B-01	POMT1	ENST00000418774.1	chr9	134378395:134378460:134379575:134379727:134381500:134381607,134378395:134378460:134379575:134379727:134381789:134381840,134378345:134378700:134379575:134379727:134381500:134381607,	134379576	134379727	134379603	134379614	Frame_Shift_Del	AAGATGTGGGGA	-	.
ESCA	TCGA-VR-AA7B-01	MCM3	ENST00000596288.1,ENST00000476448.1,ENST00000419835.2,ENST00000229854.7	chr6	52141864:52141996:52142332:52142486:52143539:52143648,	52142333	52142486	52142452	52142470	Frame_Shift_Del	GGGGCCAATGACTTGGCCA	-	p.344_350del
ESCA	TCGA-2H-A9GI-01	CNBP	ENST00000504813.1	chr3	128890288:128890381:128890476:128890614:128902618:128902707,128890288:128890351:128890476:128890614:128902618:128902707,	128890477	128890614	128890490	128890490	Frame_Shift_Del	A	-	p.F37fs
ESCA	TCGA-2H-A9GI-01	PHACTR2	ENST00000402863.3,ENST00000397980.3,ENST00000367582.3,ENST00000440869.2,ENST00000451827.2	chr6	143999309:143999346:144033152:144033320:144070121:144070202,	144033153	144033320	144033170	144033170	Frame_Shift_Del	G	-	p.A11fs
ESCA	TCGA-2H-A9GI-01	CDCA2	ENST00000380665.3,ENST00000330560.3,ENST00000521098.2	chr8	25346067:25346205:25360888:25361060:25364025:25365389,	25360889	25361060	25360941	25360942	Frame_Shift_Ins	-	ATCTTTAT	p.I575fs
ESCA	TCGA-2H-A9GI-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579579	7579580	Frame_Shift_Ins	-	GGCAAGGG	p.L36fs
ESCA	TCGA-2H-A9GK-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042123	134042123	Frame_Shift_Del	G	-	p.W2365fs
ESCA	TCGA-2H-A9GL-01	PLCB1	ENST00000378641.3	chr20	8770824:8770908:8782702:8782820:8862268:8865547,	8782703	8782820	8782721	8782724	Frame_Shift_Del	TTCT	-	p.FL1148fs
ESCA	TCGA-2H-A9GN-01	CD96	ENST00000438817.2,ENST00000352690.4,ENST00000494798.1	chr3	111286427:111286494:111297873:111298081:111304169:111304225,	111297874	111298081	111298030	111298031	Frame_Shift_Del	AG	-	p.R234fs
ESCA	TCGA-2H-A9GN-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.R209fs
ESCA	TCGA-2H-A9GQ-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970894	21970901	Frame_Shift_Del	TCCTCACC	-	p.GED102fs
ESCA	TCGA-2H-A9GQ-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016373	1016376	Frame_Shift_Del	GAAG	-	p.SS2142fs
ESCA	TCGA-2H-A9GR-01	UPK3B	ENST00000443097.2,ENST00000394849.1	chr7	76139931:76140054:76140219:76140369:76140973:76141199,	76140220	76140369	76140306	76140307	Frame_Shift_Del	TG	-	p.C113fs
ESCA	TCGA-IC-A6RE-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225567860:225568024:225569084:225569281:225576080:225576193,	225569085	225569281	225569205	225569206	Frame_Shift_Del	GA	-	p.G4232fs
ESCA	TCGA-IG-A3QL-01	PTCH2	ENST00000372192.3,ENST00000447098.2	chr1	45294653:45294746:45294828:45294984:45295073:45295205,	45294829	45294984	45294908	45294908	Frame_Shift_Del	A	-	p.L432fs
ESCA	TCGA-IG-A3QL-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510227	195510228	Frame_Shift_Ins	-	G	p.F2742fs
ESCA	TCGA-IG-A3YB-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131369882:131369982:131370130:131370328:131370408:131370555,	131370131	131370328	131370264	131370264	Frame_Shift_Del	G	-	p.R1427fs
ESCA	TCGA-IG-A4P3-01	AP5Z1	ENST00000348624.4,ENST00000401897.1,ENST00000496303.1	chr7	4820809:4820943:4821198:4821385:4822946:4823057,	4821199	4821385	4821237	4821237	Frame_Shift_Del	T	-	p.L73fs
ESCA	TCGA-IG-A4QS-01	FAM102B	ENST00000370035.3,ENST00000405454.1	chr1	109143187:109143308:109148844:109148874:109154799:109154916,	109148845	109148874	109148850	109148850	Frame_Shift_Del	A	-	p.L88fs
ESCA	TCGA-IG-A4QS-01	ST8SIA4	ENST00000231461.5	chr5	100142638:100147833:100191806:100192100:100222046:100222304,	100191807	100192100	100191934	100191934	Frame_Shift_Del	A	-	p.W224fs
ESCA	TCGA-IG-A50L-01	EMC3	ENST00000487465.1,ENST00000245046.2,ENST00000497557.1,ENST00000429759.1	chr3	10015311:10015393:10016067:10016172:10018640:10018734,	10016068	10016172	10016090	10016091	Frame_Shift_Ins	-	A	p.N130fs
ESCA	TCGA-IG-A51D-01	RBBP7	ENST00000425696.1,ENST00000380084.4,ENST00000404022.1,ENST00000330735.3,ENST00000380087.2	chrX	16863150:16863226:16863950:16864061:16867366:16867424,	16863951	16864061	16864049	16864050	Frame_Shift_Del	CT	-	p.GG370fs
ESCA	TCGA-IG-A5B8-01	AEBP1	ENST00000223357.3	chr7	44147227:44147299:44147407:44147530:44147605:44147683,	44147408	44147530	44147454	44147454	Frame_Shift_Del	A	-	p.R265fs
ESCA	TCGA-IG-A625-01	LRP8	ENST00000347547.2,ENST00000480045.1,ENST00000306052.6	chr1	53712689:53712728:53715051:53715228:53716361:53716534,	53715052	53715228	53715213	53715214	Frame_Shift_Ins	-	AA	p.LS897fs
ESCA	TCGA-IG-A8O2-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607509	46607510	Frame_Shift_Ins	-	A	p.D567fs
ESCA	TCGA-IG-A8O2-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000417784.1,ENST00000317096.4	chr3	183551279:183551377:183551511:183551613:183558357:183558406,	183551512	183551613	183551540	183551547	Frame_Shift_Del	AGGAAAAT	-	p.IFL299fs
ESCA	TCGA-IG-A97H-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000551264.1,ENST00000361961.3	chr12	39701366:39701531:39703387:39703568:39705218:39705355,	39703388	39703568	39703470	39703471	Frame_Shift_Ins	-	A	p.Q1400fs
ESCA	TCGA-JY-A6F8-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29070455	29070456	Frame_Shift_Del	CA	-	p.S558fs
ESCA	TCGA-JY-A6F8-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3149731:3149934:3156019:3156146:3158798:3158926,	3156020	3156146	3156053	3156054	Frame_Shift_Ins	-	T	p.K1178fs
ESCA	TCGA-JY-A6F8-01	SCYL1	ENST00000533862.1	chr11	65304507:65304599:65305279:65305351:65305474:65305653,	65305280	65305351	65305287	65305294	Frame_Shift_Del	CCGAGTCT	-	p.AES656fs
ESCA	TCGA-JY-A6FA-01	YEATS2	ENST00000305135.5	chr3	183469860:183470041:183471913:183472153:183474315:183474477,	183471914	183472153	183472028	183472029	Frame_Shift_Ins	-	T	p.R422fs
ESCA	TCGA-JY-A6FE-01	STYXL1	ENST00000460184.2,ENST00000474328.1,ENST00000360591.3,ENST00000340062.5,ENST00000451157.1	chr7	75657959:75658021:75659738:75659842:75677129:75677271,	75659739	75659842	75659797	75659798	Frame_Shift_Ins	-	A	p.T15fs
ESCA	TCGA-JY-A6FE-01	STYXL1	ENST00000359697.3	chr7	75657959:75658021:75659738:75659845:75677129:75677271,75657959:75658021:75659738:75659845:75676979:75677281,	75659739	75659845	75659797	75659798	Frame_Shift_Ins	-	A	p.T15fs
ESCA	TCGA-JY-A6FE-01	CACNB3	ENST00000548279.1	chr12	49217561:49217586:49218043:49218156:49218451:49218480,	49218044	49218156	49218137	49218143	Frame_Shift_Del	AAACAGG	-	p.KQE130fs
ESCA	TCGA-JY-A6FE-01	CACNB3	ENST00000550391.1,ENST00000301050.2,ENST00000550168.1,ENST00000549226.1,ENST00000550064.1,ENST00000540990.1,ENST00000550483.1,ENST00000536187.2,ENST00000552022.1,ENST00000548860.1,ENST00000547392.1,ENST00000551544.1,ENST00000547818.1	chr12	49217561:49217586:49218040:49218156:49218451:49218480,	49218041	49218156	49218137	49218143	Frame_Shift_Del	AAACAGG	-	p.KQE130fs
ESCA	TCGA-JY-A6FG-01	KDM1A	ENST00000542151.1,ENST00000400181.4	chr1	23345987:23346440:23356961:23357127:23370919:23370979,	23356962	23357127	23357117	23357118	Frame_Shift_Ins	-	G	p.T170fs
ESCA	TCGA-JY-A6FG-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268876	115268877	Frame_Shift_Ins	-	AATC	p.Y578fs
ESCA	TCGA-JY-A6FG-01	PKP1	ENST00000352845.3,ENST00000367324.3,ENST00000263946.3	chr1	201293555:201293709:201294068:201294255:201294881:201294966,	201294069	201294255	201294233	201294239	Frame_Shift_Del	ATCATCA	-	p.IIN688fs
ESCA	TCGA-JY-A6FG-01	TUBB	ENST00000435534.1	chr6	30688133:30688340:30690313:30690422:30690694:30690805,	30690314	30690422	30690400	30690401	Frame_Shift_Del	TG	-	p.SV30fs
ESCA	TCGA-JY-A6FG-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44217411:44217571:44217757:44217891:44218027:44218336,	44217758	44217891	44217808	44217811	Frame_Shift_Del	CAGA	-	p.QT189fs
ESCA	TCGA-JY-A6FG-01	SKOR1	ENST00000554240.1	chr15	68115894:68115998:68118273:68120482:68121516:68121607,	68118274	68120482	68119388	68119388	Frame_Shift_Del	A	-	p.K409fs
ESCA	TCGA-JY-A6FG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351637	89351637	Frame_Shift_Del	T	-	p.K438fs
ESCA	TCGA-JY-A6FG-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300459	21300460	Frame_Shift_Del	AT	-	p.H330fs
ESCA	TCGA-JY-A6FH-01	RNH1	ENST00000397615.2,ENST00000534797.1,ENST00000397614.1,ENST00000354420.2,ENST00000525701.1,ENST00000525522.1,ENST00000356187.5,ENST00000438658.2,ENST00000397604.3,ENST00000533410.1	chr11	494560:494778:494882:495053:497970:498141,	494883	495053	494990	494991	Frame_Shift_Ins	-	T	p.T397fs
ESCA	TCGA-JY-A6FH-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016549	1016561	Frame_Shift_Del	AGAGGCTGTAGCT	-	p.TATAS2080fs
ESCA	TCGA-JY-A938-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370345	240370345	Frame_Shift_Del	C	-	p.Q745fs
ESCA	TCGA-JY-A938-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39545138:39545297:39554965:39555110:39556132:39556212,	39554966	39555110	39555000	39555001	Frame_Shift_Ins	-	T	p.G63fs
ESCA	TCGA-JY-A938-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39545138:39545297:39554965:39555110:39556132:39556212,	39554966	39555110	39555002	39555008	Frame_Shift_Del	AGAGGAA	-	p.RSS60fs
ESCA	TCGA-JY-A938-01	CYTH4	ENST00000248901.6,ENST00000462927.1	chr22	37695266:37695347:37696947:37697060:37699294:37699336,	37696948	37697060	37696983	37696995	Frame_Shift_Del	CCCAGAAGATAGA	-	p.AQKID157fs
ESCA	TCGA-JY-A93D-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100205103:100205285:100286425:100286560:100287308:100287482,	100286426	100286560	100286533	100286533	Frame_Shift_Del	T	-	p.S875fs
ESCA	TCGA-JY-A93D-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971025	21971026	Frame_Shift_Del	GC	-	p.GP125fs
ESCA	TCGA-JY-A93D-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971025	21971026	Frame_Shift_Del	GC	-	p.GP125fs
ESCA	TCGA-JY-A93E-01	ARHGEF25	ENST00000333972.7,ENST00000286494.4,ENST00000471370.1	chr12	58009294:58009495:58009619:58009800:58010066:58010278,	58009620	58009800	58009787	58009788	Frame_Shift_Ins	-	T	p.L470fs
ESCA	TCGA-JY-A93E-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791696:42791879:42791961:42792127:42793039:42793242,	42791962	42792127	42792111	42792112	Frame_Shift_Ins	-	GCTG	p.C1215fs
ESCA	TCGA-JY-A93F-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097621	27097622	Frame_Shift_Ins	-	A	p.KK1070fs
ESCA	TCGA-JY-A93F-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90947659:90947840:90949253:90949303:90955480:90955594,	90949254	90949303	90949256	90949256	Frame_Shift_Del	A	-	p.F744fs
ESCA	TCGA-L5-A43I-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.R574fs
ESCA	TCGA-L5-A43J-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
ESCA	TCGA-L5-A43J-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889632	25889632	Frame_Shift_Del	T	-	p.S202fs
ESCA	TCGA-L5-A43J-01	FAF1	ENST00000487898.1,ENST00000396153.2,ENST00000371778.4	chr1	51204534:51204626:51210355:51210447:51253671:51253877,	51210356	51210447	51210386	51210386	Frame_Shift_Del	T	-	p.K143fs
ESCA	TCGA-L5-A43J-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100376267:100376403:100377960:100378073:100379082:100379294,	100377961	100378073	100378027	100378028	Frame_Shift_Ins	-	A	p.SK1301fs
ESCA	TCGA-L5-A43J-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.G557fs
ESCA	TCGA-L5-A43J-01	EML4	ENST00000401738.3	chr2	42491845:42491871:42492058:42492091:42507989:42508113,	42492059	42492091	42492077	42492077	Frame_Shift_Del	A	-	p.E229fs
ESCA	TCGA-L5-A43J-01	NPHP1	ENST00000417665.1	chr2	110881284:110881640:110882795:110882900:110883213:110883258,	110882796	110882900	110882862	110882862	Frame_Shift_Del	T	-	p.K599fs
ESCA	TCGA-L5-A43J-01	BIN1	ENST00000351659.3,ENST00000357970.3,ENST00000316724.5	chr2	127821508:127821594:127825738:127825831:127826499:127826607,	127825739	127825831	127825800	127825801	Frame_Shift_Ins	-	G	p.V184fs
ESCA	TCGA-L5-A43J-01	MAP3K2	ENST00000344908.5,ENST00000409947.1	chr2	128087496:128087584:128087967:128088081:128093445:128093545,	128087968	128088081	128088010	128088017	Frame_Shift_Del	CATATGAA	-	p.IHM110fs
ESCA	TCGA-L5-A43J-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551296	Frame_Shift_Del	A	-	p.L869fs
ESCA	TCGA-L5-A43J-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551296	Frame_Shift_Del	A	-	p.L869fs
ESCA	TCGA-L5-A43J-01	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335732	173335733	Frame_Shift_Ins	-	T	p.I225fs
ESCA	TCGA-L5-A43J-01	OSGEPL1	ENST00000519810.1,ENST00000518114.1,ENST00000522700.1	chr2	190619898:190620286:190626145:190626386:190627410:190627493,	190626146	190626386	190626331	190626331	Frame_Shift_Del	A	-	p.F12fs
ESCA	TCGA-L5-A43J-01	TOPBP1	ENST00000260810.5	chr3	133377859:133377994:133379887:133379978:133380612:133380737,	133379888	133379978	133379900	133379900	Frame_Shift_Del	A	-	p.F24fs
ESCA	TCGA-L5-A43J-01	VEGFC	ENST00000280193.2	chr4	177608974:177609081:177632652:177632804:177648931:177649001,	177632653	177632804	177632776	177632777	Frame_Shift_Ins	-	GA	p.R194fs
ESCA	TCGA-L5-A43J-01	ZFR	ENST00000265069.8	chr5	32403210:32403502:32404010:32404202:32406878:32407126,	32404011	32404202	32404161	32404161	Frame_Shift_Del	T	-	p.K358fs
ESCA	TCGA-L5-A43J-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922881	150922882	Frame_Shift_Del	GA	-	p.SP2602fs
ESCA	TCGA-L5-A43J-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171800793:171800819:171809039:171809131:171821566:171821643,	171809040	171809131	171809111	171809111	Frame_Shift_Del	G	-	p.P110fs
ESCA	TCGA-L5-A43J-01	TFAP2A	ENST00000497266.1,ENST00000478375.1,ENST00000475264.1,ENST00000482890.1,ENST00000488193.1,ENST00000379608.3,ENST00000466073.1,ENST00000379604.2,ENST00000489805.1,ENST00000379613.3,ENST00000319516.4,ENST00000490875.1,ENST00000473652.1	chr6	10404900:10404972:10407025:10407077:10410133:10410327,	10407026	10407077	10407037	10407038	Frame_Shift_Del	AC	-	p.V176fs
ESCA	TCGA-L5-A43J-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000373822.1,ENST00000423325.2,ENST00000346162.6,ENST00000510290.1	chr6	35837443:35837678:35838057:35838271:35838710:35838732,	35838058	35838271	35838144	35838145	Frame_Shift_Ins	-	T	p.T302fs
ESCA	TCGA-L5-A43J-01	NFYA	ENST00000353205.5,ENST00000341376.6	chr6	41057942:41058048:41059266:41059433:41060650:41060824,	41059267	41059433	41059278	41059279	Frame_Shift_Ins	-	T	p.F187fs
ESCA	TCGA-L5-A43J-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000490904.2	chr6	161412875:161413115:161455290:161455481:161469647:161469835,	161455291	161455481	161455391	161455391	Frame_Shift_Del	C	-	p.P86fs
ESCA	TCGA-L5-A43J-01	POR	ENST00000447222.1	chr7	75608768:75608897:75609656:75610040:75610365:75610490,	75609657	75610040	75609955	75609955	Frame_Shift_Del	C	-	p.A43fs
ESCA	TCGA-L5-A43J-01	DNAJC2	ENST00000475065.1,ENST00000249270.7,ENST00000454277.1,ENST00000379263.3,ENST00000379257.3	chr7	102964044:102964110:102964928:102965009:102966989:102967131,	102964929	102965009	102964992	102964992	Frame_Shift_Del	T	-	p.N197fs
ESCA	TCGA-L5-A43J-01	DMTN	ENST00000358242.3,ENST00000523300.1,ENST00000517305.1,ENST00000523623.1,ENST00000265800.5,ENST00000443491.2,ENST00000520174.1,ENST00000415253.1,ENST00000517804.1,ENST00000517418.1,ENST00000519850.1,ENST00000432128.1,ENST00000519907.1,ENST00000523782.2,ENST00000523266.1,ENST00000381470.3	chr8	21925037:21925193:21926526:21926571:21926929:21926967,	21926527	21926571	21926552	21926552	Frame_Shift_Del	C	-	p.S92fs
ESCA	TCGA-L5-A43J-01	PRKDC	ENST00000518216.1,ENST00000523565.1	chr8	48802817:48803041:48805699:48805947:48809720:48809854,	48805700	48805947	48805866	48805866	Frame_Shift_Del	C	-	p.G1228fs
ESCA	TCGA-L5-A43J-01	HNF4G	ENST00000396419.1	chr8	76456049:76456214:76459821:76459916:76463622:76463729,76402323:76402443:76459821:76459916:76463622:76463729,	76459822	76459916	76459907	76459907	Frame_Shift_Del	A	-	p.K116fs
ESCA	TCGA-L5-A43J-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133975238:133975319:133978804:133978942:133980038:133980142,	133978805	133978942	133978910	133978910	Frame_Shift_Del	C	-	p.S1885fs
ESCA	TCGA-L5-A43J-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.WG392fs
ESCA	TCGA-L5-A43J-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134350640	134350640	Frame_Shift_Del	C	-	p.P1043fs
ESCA	TCGA-L5-A43J-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351550	134351551	Frame_Shift_Del	TG	-	p.L1345fs
ESCA	TCGA-L5-A43J-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.R314fs
ESCA	TCGA-L5-A43J-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000605788.1,ENST00000461421.1,ENST00000476468.1,ENST00000488254.2,ENST00000464969.2	chr10	103918949:103919065:103919189:103919325:103919652:103919695,	103919190	103919325	103919299	103919299	Frame_Shift_Del	A	-	p.Q288fs
ESCA	TCGA-L5-A43J-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115986880	115986880	Frame_Shift_Del	A	-	p.L1075fs
ESCA	TCGA-L5-A43J-01	HPX	ENST00000533856.1,ENST00000533369.1,ENST00000525057.1,ENST00000265983.3,ENST00000534800.1,ENST00000528348.1	chr11	6453135:6453247:6461696:6461768:6461901:6461954,6461394:6461516:6461696:6461768:6461901:6461954,	6461697	6461768	6461701	6461701	Frame_Shift_Del	A	-	p.F70fs
ESCA	TCGA-L5-A43J-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068234	88068234	Frame_Shift_Del	T	-	p.K63fs
ESCA	TCGA-L5-A43J-01	RPS26	ENST00000552361.1	chr12	56435923:56435953:56436208:56436386:56437146:56437277,	56436209	56436386	56436335	56436336	Frame_Shift_Del	AT	-	p.I44fs
ESCA	TCGA-L5-A43J-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.K266fs
ESCA	TCGA-L5-A43J-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074772	31074772	Frame_Shift_Del	A	-	p.K360fs
ESCA	TCGA-L5-A43J-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693722	Frame_Shift_Del	T	-	p.S690fs
ESCA	TCGA-L5-A43J-01	MIS18BP1	ENST00000454990.1	chr14	45711963:45712077:45715945:45716580:45722237:45722380,	45715946	45716580	45716019	45716019	Frame_Shift_Del	T	-	p.K157fs
ESCA	TCGA-L5-A43J-01	DDX19B	ENST00000566216.1,ENST00000393657.2,ENST00000568625.1,ENST00000568460.1,ENST00000563206.1,ENST00000563392.1,ENST00000288071.6	chr16	70349871:70350007:70351398:70351491:70358487:70358590,	70351399	70351491	70351424	70351425	Frame_Shift_Del	TA	-	p.Y108fs
ESCA	TCGA-L5-A43J-01	TAF1C	ENST00000544090.1,ENST00000341690.6	chr16	84212727:84213457:84213551:84213686:84213775:84213934,	84213552	84213686	84213651	84213651	Frame_Shift_Del	G	-	p.Q534fs
ESCA	TCGA-L5-A43J-01	TAF1C	ENST00000570117.1,ENST00000566732.1,ENST00000564774.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000564208.1	chr16	84212727:84213457:84213551:84213689:84213775:84213934,	84213552	84213689	84213651	84213651	Frame_Shift_Del	G	-	p.Q534fs
ESCA	TCGA-L5-A43J-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P598fs
ESCA	TCGA-L5-A43J-01	CSF3	ENST00000225474.2	chr17	38171698:38171767:38171943:38172107:38172485:38172593,	38171944	38172107	38171995	38171995	Frame_Shift_Del	C	-	p.T27fs
ESCA	TCGA-L5-A43J-01	CSF3	ENST00000394149.3	chr17	38171698:38171767:38171943:38172098:38172485:38172593,	38171944	38172098	38171995	38171995	Frame_Shift_Del	C	-	p.T27fs
ESCA	TCGA-L5-A43J-01	PRR11	ENST00000581182.1,ENST00000578542.1,ENST00000580177.1	chr17	57233117:57233166:57247108:57247241:57262414:57262565,	57247109	57247241	57247171	57247171	Frame_Shift_Del	A	-	p.K22fs
ESCA	TCGA-L5-A43J-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153489	19153489	Frame_Shift_Del	A	-	p.L439fs
ESCA	TCGA-L5-A43J-01	MBD1	ENST00000591416.1,ENST00000339998.6,ENST00000424334.2,ENST00000398495.2,ENST00000269471.5,ENST00000349085.2,ENST00000457839.2,ENST00000590208.1,ENST00000398493.1,ENST00000585595.1,ENST00000347968.3,ENST00000398488.1,ENST00000269468.5,ENST00000436910.1,ENST00000588937.1,ENST00000587605.1,ENST00000586118.1,ENST00000589733.1,ENST00000382948.5,ENST00000591535.1	chr18	47802020:47802098:47802204:47802351:47802747:47802788,	47802205	47802351	47802303	47802304	Frame_Shift_Del	CA	-	p.CG188fs
ESCA	TCGA-L5-A43J-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996513	45996513	Frame_Shift_Del	G	-	p.P39fs
ESCA	TCGA-L5-A43J-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158042	Frame_Shift_Del	C	-	p.T1178fs
ESCA	TCGA-L5-A43J-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000490315.1,ENST00000331029.7,ENST00000360091.3,ENST00000332035.6,ENST00000483629.1,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29692228:29692358:29693816:29693939:29694722:29694791,	29693817	29693939	29693886	29693886	Frame_Shift_Del	G	-	p.R455fs
ESCA	TCGA-L5-A43J-01	TRABD	ENST00000395829.1	chr22	50636503:50636615:50636773:50636944:50637544:50637998,	50636774	50636944	50636799	50636800	Frame_Shift_Del	AG	-	p.R328fs
ESCA	TCGA-L5-A4OE-01	MICAL2	ENST00000527546.1,ENST00000537344.1,ENST00000379612.3	chr11	12257723:12257792:12260982:12261132:12278331:12278456,12257723:12257792:12260982:12261132:12270730:12270793,	12260983	12261132	12261023	12261024	Frame_Shift_Ins	-	TT	p.V702fs
ESCA	TCGA-L5-A4OE-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65418719:65418870:65420381:65420594:65423205:65423419,	65420382	65420594	65420509	65420510	Frame_Shift_Del	TG	-	p.TV718fs
ESCA	TCGA-L5-A4OG-01	SNAP91	ENST00000520302.1	chr6	84302173:84302257:84302664:84302736:84302900:84302978,84300929:84301013:84302664:84302736:84302900:84302978,	84302665	84302736	84302714	84302714	Frame_Shift_Del	T	-	p.Q599fs
ESCA	TCGA-L5-A4OI-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
ESCA	TCGA-L5-A4OI-01	ZYG11A	ENST00000371528.1	chr1	53320136:53320302:53322669:53323421:53326402:53326519,	53322670	53323421	53322739	53322739	Frame_Shift_Del	A	-	p.Q109fs
ESCA	TCGA-L5-A4OI-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.P117fs
ESCA	TCGA-L5-A4OI-01	SGIP1	ENST00000237247.6	chr1	67098752:67098777:67099762:67099846:67105459:67105516,	67099763	67099846	67099769	67099769	Frame_Shift_Del	A	-	p.K38fs
ESCA	TCGA-L5-A4OI-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.G557fs
ESCA	TCGA-L5-A4OI-01	ATP1A1	ENST00000369494.1,ENST00000537345.1,ENST00000295598.5,ENST00000369496.4	chr1	116929924:116930113:116930752:116930866:116931259:116931285,	116930753	116930866	116930848	116930849	Frame_Shift_Ins	-	A	p.LK161fs
ESCA	TCGA-L5-A4OI-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
ESCA	TCGA-L5-A4OI-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
ESCA	TCGA-L5-A4OI-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
ESCA	TCGA-L5-A4OI-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171510968:171511368:171514617:171514826:171519224:171519379,	171514618	171514826	171514769	171514769	Frame_Shift_Del	A	-	p.K1640fs
ESCA	TCGA-L5-A4OI-01	SUCO	ENST00000263688.3,ENST00000610051.1,ENST00000367723.4,ENST00000608151.1	chr1	172548341:172548407:172554157:172554226:172554997:172555088,	172554158	172554226	172554204	172554204	Frame_Shift_Del	A	-	p.A667fs
ESCA	TCGA-L5-A4OI-01	CD46	ENST00000469535.1,ENST00000441839.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1	chr1	207925401:207925654:207930358:207930547:207930884:207930987,	207930359	207930547	207930454	207930454	Frame_Shift_Del	A	-	p.K66fs
ESCA	TCGA-L5-A4OI-01	SNAP47	ENST00000426344.1,ENST00000366759.4,ENST00000315781.5	chr1	227923136:227923200:227935392:227935934:227946695:227947186,	227935393	227935934	227935790	227935790	Frame_Shift_Del	G	-	p.R163fs
ESCA	TCGA-L5-A4OI-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107459563	107459563	Frame_Shift_Del	G	-	p.R291fs
ESCA	TCGA-L5-A4OI-01	TMEM87B	ENST00000283206.4	chr2	112821738:112821830:112824512:112824644:112832488:112832539,	112824513	112824644	112824589	112824590	Frame_Shift_Ins	-	A	p.K132fs
ESCA	TCGA-L5-A4OI-01	HDAC11	ENST00000433119.1	chr3	13524963:13525064:13538235:13538352:13540012:13540055,13524966:13525064:13538235:13538352:13542212:13542289,	13538236	13538352	13538267	13538268	Frame_Shift_Ins	-	C	p.T95fs
ESCA	TCGA-L5-A4OI-01	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44986659:44986784:45000622:45000952:45017424:45017658,	45000623	45000952	45000845	45000845	Frame_Shift_Del	G	-	p.P28fs
ESCA	TCGA-L5-A4OI-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
ESCA	TCGA-L5-A4OI-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
ESCA	TCGA-L5-A4OI-01	TMEM39A	ENST00000319172.5,ENST00000468676.1,ENST00000486235.1,ENST00000438581.2,ENST00000497993.1	chr3	119171355:119171377:119176864:119177087:119180808:119180855,	119176865	119177087	119176962	119176962	Frame_Shift_Del	A	-	p.F80fs
ESCA	TCGA-L5-A4OI-01	TMEM39A	ENST00000490099.1	chr3	119171355:119171377:119176864:119177031:119180808:119180855,	119176865	119177031	119176962	119176962	Frame_Shift_Del	A	-	p.F80fs
ESCA	TCGA-L5-A4OI-01	NCEH1	ENST00000424772.1,ENST00000538775.1	chr3	172363412:172363482:172365651:172365904:172428636:172428842,	172365652	172365904	172365826	172365826	Frame_Shift_Del	T	-	p.S73fs
ESCA	TCGA-L5-A4OI-01	NCEH1	ENST00000273512.3	chr3	172363412:172363482:172365675:172365904:172428636:172428842,	172365676	172365904	172365826	172365826	Frame_Shift_Del	T	-	p.S73fs
ESCA	TCGA-L5-A4OI-01	HGFAC	ENST00000511533.1	chr4	3443701:3443845:3444458:3444639:3444776:3444873,	3444459	3444639	3444594	3444594	Frame_Shift_Del	C	-	p.P87fs
ESCA	TCGA-L5-A4OI-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P230fs
ESCA	TCGA-L5-A4OI-01	TMPRSS11A	ENST00000334830.7	chr4	68797710:68797778:68810227:68810355:68812167:68812282,	68810228	68810355	68810346	68810346	Frame_Shift_Del	T	-	p.K47fs
ESCA	TCGA-L5-A4OI-01	TMPRSS11A	ENST00000508048.1,ENST00000396188.2	chr4	68797710:68797778:68810236:68810355:68812167:68812282,	68810237	68810355	68810346	68810346	Frame_Shift_Del	T	-	p.K47fs
ESCA	TCGA-L5-A4OI-01	PPM1K	ENST00000508256.1,ENST00000608933.1	chr4	89186152:89186287:89189341:89189486:89189892:89190058,	89189342	89189486	89189444	89189444	Frame_Shift_Del	C	-	p.G250fs
ESCA	TCGA-L5-A4OI-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823494	114823494	Frame_Shift_Del	T	-	p.K582fs
ESCA	TCGA-L5-A4OI-01	RWDD4	ENST00000510702.1	chr4	184572136:184572284:184572370:184572476:184580081:184580304,184572136:184572284:184572370:184572476:184577033:184577114,	184572371	184572476	184572382	184572382	Frame_Shift_Del	A	-	p.F68fs
ESCA	TCGA-L5-A4OI-01	RWDD4	ENST00000327570.9,ENST00000326397.5	chr4	184572136:184572284:184572370:184572480:184577033:184577114,	184572371	184572480	184572382	184572382	Frame_Shift_Del	A	-	p.F68fs
ESCA	TCGA-L5-A4OI-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766232	70766233	Frame_Shift_Ins	-	T	p.IF310fs
ESCA	TCGA-L5-A4OI-01	WDR41	ENST00000515253.1,ENST00000507029.1,ENST00000296679.4,ENST00000502528.1,ENST00000414719.2	chr5	76728717:76729112:76732085:76732219:76733160:76733249,	76732086	76732219	76732211	76732212	Frame_Shift_Ins	-	A	p.LH367fs
ESCA	TCGA-L5-A4OI-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
ESCA	TCGA-L5-A4OI-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
ESCA	TCGA-L5-A4OI-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647320	Frame_Shift_Del	A	-	p.K816fs
ESCA	TCGA-L5-A4OI-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26093113	26093113	Frame_Shift_Del	C	-	p.P274fs
ESCA	TCGA-L5-A4OI-01	NELFE	ENST00000492539.1	chr6	31924732:31924787:31926084:31926231:31926668:31926731,	31926085	31926231	31926206	31926206	Frame_Shift_Del	G	-	p.P6fs
ESCA	TCGA-L5-A4OI-01	NELFE	ENST00000492185.1,ENST00000481121.1,ENST00000491139.1,ENST00000441998.1,ENST00000444811.2	chr6	31924732:31924787:31926148:31926231:31926668:31926731,	31926149	31926231	31926206	31926206	Frame_Shift_Del	G	-	p.P6fs
ESCA	TCGA-L5-A4OI-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99857048:99857220:99858616:99858840:99860426:99860615,	99858617	99858840	99858807	99858807	Frame_Shift_Del	G	-	p.P105fs
ESCA	TCGA-L5-A4OI-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199466	20199466	Frame_Shift_Del	T	-	p.N173fs
ESCA	TCGA-L5-A4OI-01	PON2	ENST00000491069.1	chr7	95041635:95041789:95045483:95045609:95053826:95053897,	95045484	95045609	95045559	95045560	Frame_Shift_Ins	-	A	p.LC86fs
ESCA	TCGA-L5-A4OI-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000493290.1	chr7	95041635:95041789:95045553:95045609:95053826:95053897,	95045554	95045609	95045559	95045560	Frame_Shift_Ins	-	A	p.LC86fs
ESCA	TCGA-L5-A4OI-01	CCDC136	ENST00000297788.4	chr7	128454702:128454973:128455667:128455985:128457811:128457918,	128455668	128455985	128455793	128455794	Frame_Shift_Del	GT	-	p.QC1057fs
ESCA	TCGA-L5-A4OI-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
ESCA	TCGA-L5-A4OI-01	LEPROTL1	ENST00000321250.8,ENST00000518192.1	chr8	29959455:29959489:29961815:29962002:29994787:29995213,29959455:29959489:29961815:29962002:29963261:29963544,	29961816	29962002	29961841	29961841	Frame_Shift_Del	T	-	p.F41fs
ESCA	TCGA-L5-A4OI-01	ADAM32	ENST00000379907.4	chr8	39044427:39044564:39068662:39068843:39079128:39079221,	39068663	39068843	39068767	39068767	Frame_Shift_Del	A	-	p.Q386fs
ESCA	TCGA-L5-A4OI-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70594418:70594578:70617265:70617464:70650274:70650439,	70617266	70617464	70617403	70617403	Frame_Shift_Del	T	-	p.K495fs
ESCA	TCGA-L5-A4OI-01	TPD52	ENST00000518517.1,ENST00000524194.1,ENST00000379097.3,ENST00000379096.5,ENST00000523319.2,ENST00000521354.1,ENST00000537855.1	chr8	80954854:80954903:80963761:80963863:80965516:80965588,	80963762	80963863	80963777	80963777	Frame_Shift_Del	T	-	p.K124fs
ESCA	TCGA-L5-A4OI-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
ESCA	TCGA-L5-A4OI-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
ESCA	TCGA-L5-A4OI-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384893	124384893	Frame_Shift_Del	T	-	p.K118fs
ESCA	TCGA-L5-A4OI-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.K321fs
ESCA	TCGA-L5-A4OI-01	HSF1	ENST00000532338.1,ENST00000527328.1,ENST00000528838.1	chr8	145535451:145535522:145535648:145535930:145537196:145537302,	145535649	145535930	145535876	145535876	Frame_Shift_Del	C	-	p.S363fs
ESCA	TCGA-L5-A4OI-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.WG392fs
ESCA	TCGA-L5-A4OI-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158026	27158026	Frame_Shift_Del	A	-	p.K85fs
ESCA	TCGA-L5-A4OI-01	SUSD3	ENST00000375469.1	chr9	95831381:95831430:95838065:95838254:95840127:95840275,	95838066	95838254	95838089	95838089	Frame_Shift_Del	C	-	p.P39fs
ESCA	TCGA-L5-A4OI-01	LAMC3	ENST00000361069.4	chr9	133932315:133932534:133936421:133936610:133942346:133942592,	133936422	133936610	133936593	133936594	Frame_Shift_Ins	-	C	p.S777fs
ESCA	TCGA-L5-A4OI-01	GATA3	ENST00000379328.3	chr10	8100361:8100804:8105955:8106101:8111435:8111559,	8105956	8106101	8105978	8105979	Frame_Shift_Ins	-	G	p.WG267fs
ESCA	TCGA-L5-A4OI-01	GATA3	ENST00000346208.3	chr10	8100361:8100804:8105958:8106101:8111435:8111559,	8105959	8106101	8105978	8105979	Frame_Shift_Ins	-	G	p.WG267fs
ESCA	TCGA-L5-A4OI-01	CELF2	ENST00000537122.1,ENST00000609870.1	chr10	11259387:11259470:11291115:11291164:11299700:11299835,11207490:11207645:11291115:11291164:11299700:11299835,	11291116	11291164	11291153	11291153	Frame_Shift_Del	A	-	p.E124fs
ESCA	TCGA-L5-A4OI-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.P25fs
ESCA	TCGA-L5-A4OI-01	BEND7	ENST00000396898.2,ENST00000396900.2,ENST00000466271.1	chr10	13541882:13542080:13568137:13568221:13570472:13570533,	13568138	13568221	13568140	13568140	Frame_Shift_Del	A	-	p.L48fs
ESCA	TCGA-L5-A4OI-01	ENKUR	ENST00000496261.2,ENST00000376363.1	chr10	25284574:25284798:25288329:25288475:25304788:25304889,	25288330	25288475	25288338	25288339	Frame_Shift_Del	AG	-	p.L72fs
ESCA	TCGA-L5-A4OI-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459056	27459056	Frame_Shift_Del	A	-	p.K391fs
ESCA	TCGA-L5-A4OI-01	COMTD1	ENST00000470947.1,ENST00000372538.3,ENST00000490521.1,ENST00000469299.1	chr10	76994695:76994750:76994817:76994936:76995024:76995094,	76994818	76994936	76994846	76994846	Frame_Shift_Del	G	-	p.P140fs
ESCA	TCGA-L5-A4OI-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203598	91203598	Frame_Shift_Del	A	-	p.F43fs
ESCA	TCGA-L5-A4OI-01	ENO4	ENST00000341276.5	chr10	118616002:118616193:118618500:118618649:118620304:118620474,	118618501	118618649	118618628	118618628	Frame_Shift_Del	A	-	p.K208fs
ESCA	TCGA-L5-A4OI-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321475	46321475	Frame_Shift_Del	T	-	p.N356fs
ESCA	TCGA-L5-A4OI-01	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505296	56505296	Frame_Shift_Del	A	-	p.K373fs
ESCA	TCGA-L5-A4OI-01	R3HDM2	ENST00000402412.1,ENST00000347140.3	chr12	57696958:57697000:57704046:57704246:57789531:57789601,	57704047	57704246	57704152	57704152	Frame_Shift_Del	T	-	p.K20fs
ESCA	TCGA-L5-A4OI-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3	chr12	105583768:105583933:105589038:105589127:105589222:105589279,	105589039	105589127	105589058	105589059	Frame_Shift_Ins	-	T	p.R408fs
ESCA	TCGA-L5-A4OI-01	POLR3B	ENST00000539066.1,ENST00000228347.4	chr12	106824050:106824251:106826095:106826258:106827496:106827650,	106826096	106826258	106826212	106826213	Frame_Shift_Ins	-	G	p.WG527fs
ESCA	TCGA-L5-A4OI-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.P139fs
ESCA	TCGA-L5-A4OI-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
ESCA	TCGA-L5-A4OI-01	DOCK9	ENST00000449796.1,ENST00000448493.2,ENST00000339416.2,ENST00000472874.1,ENST00000376460.1	chr13	99500845:99500893:99502300:99502367:99505661:99505776,	99502301	99502367	99502312	99502312	Frame_Shift_Del	A	-	p.F1334fs
ESCA	TCGA-L5-A4OI-01	MIS18BP1	ENST00000454990.1,ENST00000310806.4	chr14	45706899:45706924:45711236:45711721:45711963:45712077,	45711237	45711721	45711241	45711241	Frame_Shift_Del	T	-	p.N380fs
ESCA	TCGA-L5-A4OI-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554288.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53347961:53348187:53360010:53360145:53385840:53386057,	53360011	53360145	53360081	53360082	Frame_Shift_Ins	-	T	p.K152fs
ESCA	TCGA-L5-A4OI-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728643	100728644	Frame_Shift_Ins	-	A	p.K228fs
ESCA	TCGA-L5-A4OI-01	ZNF839	ENST00000262236.5,ENST00000442396.2,ENST00000559185.1,ENST00000559155.1,ENST00000558490.1,ENST00000558850.1,ENST00000561251.1,ENST00000560568.1	chr14	102800890:102800983:102802025:102802175:102805152:102805167,	102802026	102802175	102802052	102802052	Frame_Shift_Del	T	-	p.P396fs
ESCA	TCGA-L5-A4OI-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967247	64967247	Frame_Shift_Del	A	-	p.K735fs
ESCA	TCGA-L5-A4OI-01	UACA	ENST00000539319.1	chr15	70987355:70987444:70991865:70991999:71055668:71055769,	70991866	70991999	70991908	70991908	Frame_Shift_Del	T	-	p.K57fs
ESCA	TCGA-L5-A4OI-01	CCDC33	ENST00000558659.1,ENST00000398814.3,ENST00000321288.5	chr15	74572303:74572433:74573008:74573142:74574118:74574190,	74573009	74573142	74573101	74573101	Frame_Shift_Del	A	-	p.K531fs
ESCA	TCGA-L5-A4OI-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000564954.1,ENST00000348261.5	chr16	1245028:1245083:1245431:1245565:1245925:1246023,	1245432	1245565	1245456	1245456	Frame_Shift_Del	T	-	p.F147fs
ESCA	TCGA-L5-A4OI-01	ALDOA	ENST00000395248.1	chr16	30077196:30077248:30078205:30078359:30078554:30078567,30077507:30077565:30078205:30078359:30078554:30078611,30075754:30075826:30078205:30078359:30078554:30078567,	30078206	30078359	30078291	30078291	Frame_Shift_Del	C	-	p.P26fs
ESCA	TCGA-L5-A4OI-01	FBRS	ENST00000356166.6	chr16	30673879:30674180:30675535:30675837:30676035:30676241,	30675536	30675837	30675549	30675549	Frame_Shift_Del	C	-	p.P358fs
ESCA	TCGA-L5-A4OI-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349640	89349641	Frame_Shift_Ins	-	T	p.*1104fs
ESCA	TCGA-L5-A4OI-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696716	17696716	Frame_Shift_Del	C	-	p.P153fs
ESCA	TCGA-L5-A4OI-01	B9D1	ENST00000575478.1,ENST00000575403.1,ENST00000268841.6,ENST00000395615.1,ENST00000477478.2,ENST00000574508.2,ENST00000440841.1,ENST00000261499.4,ENST00000395616.3,ENST00000477683.1,ENST00000461069.2	chr17	19251096:19251193:19261152:19261264:19263632:19263701,	19261153	19261264	19261171	19261171	Frame_Shift_Del	T	-	p.K51fs
ESCA	TCGA-L5-A4OI-01	DCAKD	ENST00000588499.1,ENST00000342350.5,ENST00000452796.2,ENST00000593094.1	chr17	43101869:43102092:43107459:43107547:43111554:43111758,	43107460	43107547	43107517	43107518	Frame_Shift_Ins	-	G	p.A116fs
ESCA	TCGA-L5-A4OI-01	CA10	ENST00000570565.1,ENST00000340813.6,ENST00000451037.2,ENST00000285273.4,ENST00000442502.2,ENST00000575181.1,ENST00000571371.1	chr17	49824992:49825178:50008349:50008492:50149678:50149753,	50008350	50008492	50008356	50008357	Frame_Shift_Ins	-	C	p.E91fs
ESCA	TCGA-L5-A4OI-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74899384:74899458:74900333:74900504:74901250:74901415,	74900334	74900504	74900438	74900438	Frame_Shift_Del	C	-	p.C208fs
ESCA	TCGA-L5-A4OI-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3134647:3134822:3135544:3135728:3141936:3142017,	3135545	3135728	3135553	3135554	Frame_Shift_Ins	-	C	p.Q734fs
ESCA	TCGA-L5-A4OI-01	CHAF1A	ENST00000301280.5	chr19	4405908:4405959:4408899:4409756:4418016:4418073,	4408900	4409756	4409561	4409564	Frame_Shift_Del	CCTT	-	p.SL255fs
ESCA	TCGA-L5-A4OI-01	KHSRP	ENST00000595223.1,ENST00000398148.3	chr19	6415619:6415745:6415818:6415907:6416308:6416418,	6415819	6415907	6415898	6415898	Frame_Shift_Del	C	-	p.G536fs
ESCA	TCGA-L5-A4OI-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433820:10433950:10434050:10434242:10439317:10439728,	10434051	10434242	10434093	10434093	Frame_Shift_Del	G	-	p.P319fs
ESCA	TCGA-L5-A4OI-01	USHBP1	ENST00000252597.3,ENST00000594190.1,ENST00000324554.5	chr19	17373637:17373799:17374810:17374959:17375054:17375156,	17374811	17374959	17374897	17374898	Frame_Shift_Ins	-	T	p.T39fs
ESCA	TCGA-L5-A4OI-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41807440:41807609:41808569:41808854:41809876:41809961,	41808570	41808854	41808818	41808818	Frame_Shift_Del	G	-	p.G648fs
ESCA	TCGA-L5-A4OI-01	CD79A	ENST00000221972.3	chr19	42383059:42383359:42383604:42383723:42384736:42384769,	42383605	42383723	42383610	42383610	Frame_Shift_Del	C	-	p.P130fs
ESCA	TCGA-L5-A4OI-01	APOC1	ENST00000592885.1	chr19	45418130:45418206:45419446:45419727:45422429:45422466,	45419447	45419727	45419665	45419666	Frame_Shift_Ins	-	A	p.K93fs
ESCA	TCGA-L5-A4OI-01	ZNF541	ENST00000448976.1,ENST00000263351.5	chr19	48024735:48024911:48025110:48025251:48032206:48032295,48024735:48024911:48025110:48025251:48042961:48043135,	48025111	48025251	48025197	48025197	Frame_Shift_Del	T	-	p.M1228fs
ESCA	TCGA-L5-A4OI-01	KCNC3	ENST00000474951.1,ENST00000391818.2,ENST00000376959.2	chr19	50815198:50818247:50819289:50819348:50823849:50824041,	50819290	50819348	50819305	50819305	Frame_Shift_Del	G	-	p.P76fs
ESCA	TCGA-L5-A4OI-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956393	19956394	Frame_Shift_Ins	-	C	p.A624fs
ESCA	TCGA-L5-A4OI-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33345476:33345907:33346607:33346736:33356266:33356389,	33346608	33346736	33346694	33346694	Frame_Shift_Del	G	-	p.P186fs
ESCA	TCGA-L5-A4OI-01	KIAA1755	ENST00000279024.4,ENST00000496900.1	chr20	36859603:36859727:36867929:36868127:36868983:36870331,	36867930	36868127	36868084	36868084	Frame_Shift_Del	G	-	p.P531fs
ESCA	TCGA-L5-A4OI-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49196239:49196463:49197801:49197997:49199228:49199522,	49197802	49197997	49197838	49197838	Frame_Shift_Del	G	-	p.V375fs
ESCA	TCGA-L5-A4OI-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467047	58467047	Frame_Shift_Del	T	-	p.M788fs
ESCA	TCGA-L5-A4OI-01	SH3BP1	ENST00000417536.1	chr22	38049790:38049880:38051278:38051322:38051932:38052048,	38051279	38051322	38051313	38051314	Frame_Shift_Ins	-	C	p.PP576fs
ESCA	TCGA-L5-A4OI-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393488	65393489	Frame_Shift_Ins	-	G	p.R211fs
ESCA	TCGA-L5-A4OJ-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186092082:186092352:186094735:186094926:186097209:186097423,	186094736	186094926	186094842	186094843	Frame_Shift_Ins	-	A	p.*K4202fs
ESCA	TCGA-L5-A4OO-01	ITGA4	ENST00000397033.2,ENST00000465522.1,ENST00000233573.6	chr2	182339686:182339793:182339885:182340015:182343483:182343551,	182339886	182340015	182339903	182339904	Frame_Shift_Ins	-	A	p.*K148fs
ESCA	TCGA-L5-A4OQ-01	CDC45	ENST00000455750.1,ENST00000483431.1,ENST00000487669.1,ENST00000438587.1,ENST00000263201.1,ENST00000437685.2,ENST00000491520.1,ENST00000407835.1	chr22	19467680:19467740:19468475:19468568:19470212:19470345,	19468476	19468568	19468537	19468537	Frame_Shift_Del	T	-	p.L58fs
ESCA	TCGA-L5-A4OR-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108727	14108728	Frame_Shift_Ins	-	A	p.PK1479fs
ESCA	TCGA-L5-A4OR-01	RPL7A	ENST00000315731.4,ENST00000463740.1,ENST00000489392.1,ENST00000468019.1,ENST00000323345.6	chr9	136217451:136217582:136217856:136217926:136218116:136218227,	136217857	136217926	136217908	136217909	Frame_Shift_Ins	-	A	p.*227fs
ESCA	TCGA-L5-A4OR-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018731	1018732	Frame_Shift_Ins	-	TGGCC	p.P1357fs
ESCA	TCGA-L5-A4OR-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579377	7579378	Frame_Shift_Ins	-	GT	p.G104fs
ESCA	TCGA-L5-A4OT-01	SFI1	ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000432498.1,ENST00000417682.2,ENST00000382162.3,ENST00000540643.1	chr22	32009339:32009516:32009587:32009841:32010774:32010846,	32009588	32009841	32009640	32009641	Frame_Shift_Del	AG	-	p.Q901fs
ESCA	TCGA-L5-A4OU-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647319	145647320	Frame_Shift_Ins	-	A	p.LK813fs
ESCA	TCGA-L5-A88S-01	POC5	ENST00000510798.1,ENST00000428202.2,ENST00000503835.1,ENST00000515285.1,ENST00000380475.2,ENST00000446329.2	chr5	74998429:74998635:75001528:75001612:75003561:75003700,	75001529	75001612	75001600	75001601	Frame_Shift_Ins	-	CA	p.S79fs
ESCA	TCGA-L5-A88T-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34805906:34806087:34985245:34985347:35103803:35104249,	34985246	34985347	34985330	34985331	Frame_Shift_Ins	-	A	p.T46fs
ESCA	TCGA-L5-A88W-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910684	29910685	Frame_Shift_Ins	-	GATA	p.Y75fs
ESCA	TCGA-L5-A88W-01	DONSON	ENST00000457359.1,ENST00000442660.1,ENST00000303071.5,ENST00000303113.6,ENST00000417871.1,ENST00000437395.1	chr21	34950547:34950750:34951655:34951868:34953607:34953693,	34951656	34951868	34951684	34951718	Frame_Shift_Del	CAGATGTTAAATACAGCAGTTGGCTCGTGTGGATA	-	p.CIHTSQLLYLTSA452fs
ESCA	TCGA-L5-A88W-01	DONSON	ENST00000453626.1	chr21	34950547:34950750:34951655:34951723:34953607:34953693,	34951656	34951723	34951684	34951718	Frame_Shift_Del	CAGATGTTAAATACAGCAGTTGGCTCGTGTGGATA	-	p.CIHTSQLLYLTSA452fs
ESCA	TCGA-L5-A893-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047735	96047736	Frame_Shift_Ins	-	A	p.*K25fs
ESCA	TCGA-L5-A8NF-01	TXNDC11	ENST00000573174.1,ENST00000576969.1	chr16	11824500:11824630:11827837:11827935:11829872:11829986,11815432:11815526:11827837:11827935:11829872:11829986,	11827838	11827935	11827869	11827873	Frame_Shift_Del	AAAAG	-	p.FFY178fs
ESCA	TCGA-L5-A8NH-01	NVL	ENST00000470989.1	chr1	224505579:224505632:224514092:224514166:224517772:224517823,224505579:224505627:224514092:224514166:224517772:224517823,	224514093	224514166	224514159	224514160	Frame_Shift_Ins	-	TA	p.Q22fs
ESCA	TCGA-L5-A8NI-01	TAF10	ENST00000299424.4	chr11	6632618:6632683:6632894:6633049:6633188:6633408,	6632895	6633049	6632975	6632975	Frame_Shift_Del	C	-	p.A103fs
ESCA	TCGA-L5-A8NI-01	CYP4F22	ENST00000601005.2,ENST00000269703.3	chr19	15648682:15648804:15651260:15651528:15654781:15654848,	15651261	15651528	15651362	15651381	Frame_Shift_Del	CGGCGGATGGGCGGAGGTTC	-	p.SADGRRF258fs
ESCA	TCGA-L5-A8NI-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46596298	46596299	Frame_Shift_Del	TT	-	p.F228fs
ESCA	TCGA-L5-A8NJ-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920757	107920758	Frame_Shift_Ins	-	A	p.KK125fs
ESCA	TCGA-L5-A8NM-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410403	3410404	Frame_Shift_Ins	-	C	p.T1440fs
ESCA	TCGA-L5-A8NM-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
ESCA	TCGA-L5-A8NM-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462258	16462258	Frame_Shift_Del	G	-	p.P440fs
ESCA	TCGA-L5-A8NM-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889632	25889632	Frame_Shift_Del	T	-	p.S202fs
ESCA	TCGA-L5-A8NM-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93142714:93142775:93159358:93159456:93159855:93159945,	93159359	93159456	93159366	93159366	Frame_Shift_Del	T	-	p.M408fs
ESCA	TCGA-L5-A8NM-01	ATP1A1	ENST00000488733.1,ENST00000295598.5	chr1	116915890:116916145:116926635:116926746:116927404:116927464,	116926636	116926746	116926693	116926693	Frame_Shift_Del	A	-	p.K25fs
ESCA	TCGA-L5-A8NM-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694023	156694023	Frame_Shift_Del	G	-	p.L289fs
ESCA	TCGA-L5-A8NM-01	ITLN1	ENST00000326245.3	chr1	160846328:160846606:160849100:160849204:160850377:160850498,	160849101	160849204	160849201	160849202	Frame_Shift_Ins	-	C	p.I230fs
ESCA	TCGA-L5-A8NM-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.P133fs
ESCA	TCGA-L5-A8NM-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
ESCA	TCGA-L5-A8NM-01	MZT2B	ENST00000409255.1	chr2	130940252:130940348:130941359:130941539:130948041:130948052,	130941360	130941539	130941391	130941391	Frame_Shift_Del	C	-	p.S117fs
ESCA	TCGA-L5-A8NM-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604680	160604680	Frame_Shift_Del	T	-	p.T293fs
ESCA	TCGA-L5-A8NM-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204055014:204055112:204058517:204058634:204062024:204062114,	204058518	204058634	204058623	204058623	Frame_Shift_Del	T	-	p.F2315fs
ESCA	TCGA-L5-A8NM-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612491	13612491	Frame_Shift_Del	G	-	p.L212fs
ESCA	TCGA-L5-A8NM-01	GNL3	ENST00000474423.1	chr3	52720064:52720121:52720784:52720843:52721261:52721399,52720192:52720441:52720784:52720843:52721261:52721399,	52720785	52720843	52720836	52720836	Frame_Shift_Del	A	-	p.Q10fs
ESCA	TCGA-L5-A8NM-01	ITIH4	ENST00000434759.3,ENST00000537897.1,ENST00000491663.1	chr3	52853408:52853534:52853769:52854006:52854306:52854333,	52853770	52854006	52853933	52853933	Frame_Shift_Del	C	-	p.G557fs
ESCA	TCGA-L5-A8NM-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547794	165547795	Frame_Shift_Ins	-	T	p.P343fs
ESCA	TCGA-L5-A8NM-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730307	1730308	Frame_Shift_Ins	-	C	p.A393fs
ESCA	TCGA-L5-A8NM-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462464	39462464	Frame_Shift_Del	A	-	p.K36fs
ESCA	TCGA-L5-A8NM-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1	chr4	57244313:57244630:57248642:57248763:57250235:57250465,	57248643	57248763	57248651	57248652	Frame_Shift_Ins	-	T	p.N115fs
ESCA	TCGA-L5-A8NM-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.K613fs
ESCA	TCGA-L5-A8NM-01	DCLK2	ENST00000411937.2,ENST00000506325.1,ENST00000302176.8	chr4	151000179:151000600:151023629:151023964:151114289:151114392,	151023630	151023964	151023683	151023683	Frame_Shift_Del	A	-	p.K159fs
ESCA	TCGA-L5-A8NM-01	CDH18	ENST00000382275.1,ENST00000507958.1,ENST00000274170.4	chr5	19473723:19473825:19483409:19483661:19503100:19503218,	19483410	19483661	19483637	19483638	Frame_Shift_Ins	-	T	p.A552fs
ESCA	TCGA-L5-A8NM-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
ESCA	TCGA-L5-A8NM-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
ESCA	TCGA-L5-A8NM-01	MCTP1	ENST00000515393.1,ENST00000514040.1,ENST00000508509.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8	chr5	94046522:94046632:94050481:94050591:94114814:94114868,	94050482	94050591	94050578	94050578	Frame_Shift_Del	T	-	p.K875fs
ESCA	TCGA-L5-A8NM-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788023	Frame_Shift_Del	T	-	p.K1102fs
ESCA	TCGA-L5-A8NM-01	DDX43	ENST00000539829.1	chr6	74109956:74110086:74111581:74111713:74114412:74114494,74109956:74110086:74111581:74111713:74115401:74115558,	74111582	74111713	74111695	74111696	Frame_Shift_Ins	-	A	p.K184fs
ESCA	TCGA-L5-A8NM-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508008	158508009	Frame_Shift_Ins	-	C	p.SP1110fs
ESCA	TCGA-L5-A8NM-01	FAM20C	ENST00000313766.5	chr7	195624:195732:208897:208976:286380:286473,	208898	208976	208908	208908	Frame_Shift_Del	G	-	p.S265fs
ESCA	TCGA-L5-A8NM-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603085	91603085	Frame_Shift_Del	A	-	p.K51fs
ESCA	TCGA-L5-A8NM-01	AGBL3	ENST00000359383.3,ENST00000476700.1	chr7	134674000:134674061:134678243:134678429:134701802:134701910,134674000:134674061:134678243:134678429:134694792:134695016,	134678244	134678429	134678279	134678280	Frame_Shift_Del	AC	-	p.T28fs
ESCA	TCGA-L5-A8NM-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148464710:148464841:148480874:148480982:148481062:148481169,	148480875	148480982	148480914	148480914	Frame_Shift_Del	A	-	p.K376fs
ESCA	TCGA-L5-A8NM-01	UBE3C	ENST00000348165.5	chr7	156961741:156961816:156962997:156963144:156967612:156967728,	156962998	156963144	156963108	156963109	Frame_Shift_Ins	-	T	p.LF102fs
ESCA	TCGA-L5-A8NM-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
ESCA	TCGA-L5-A8NM-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
ESCA	TCGA-L5-A8NM-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103307863:103308010:103309120:103309212:103309685:103309834,	103309121	103309212	103309203	103309204	Frame_Shift_Ins	-	A	p.LV1194fs
ESCA	TCGA-L5-A8NM-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125029867:125029958:125033789:125033909:125035683:125035836,	125033790	125033909	125033884	125033884	Frame_Shift_Del	A	-	p.E703fs
ESCA	TCGA-L5-A8NM-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134232957	134232957	Frame_Shift_Del	C	-	p.R161fs
ESCA	TCGA-L5-A8NM-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
ESCA	TCGA-L5-A8NM-01	GDI2	ENST00000380132.4,ENST00000609712.1	chr10	5842560:5842668:5853836:5853919:5855176:5855350,	5853837	5853919	5853844	5853844	Frame_Shift_Del	A	-	p.L17fs
ESCA	TCGA-L5-A8NM-01	ATRNL1	ENST00000423111.2,ENST00000355044.3,ENST00000303745.7	chr10	117308967:117309046:117486757:117486865:117607387:117607502,	117486758	117486865	117486834	117486837	Frame_Shift_Del	AACA	-	p.EQ1291fs
ESCA	TCGA-L5-A8NM-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533455	94533455	Frame_Shift_Del	C	-	p.P368fs
ESCA	TCGA-L5-A8NM-01	SMCO2	ENST00000538647.1	chr12	27627828:27627846:27628514:27628664:27648612:27648731,	27628515	27628664	27628630	27628630	Frame_Shift_Del	A	-	p.K161fs
ESCA	TCGA-L5-A8NM-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108338	102108338	Frame_Shift_Del	T	-	p.F162fs
ESCA	TCGA-L5-A8NM-01	ALG11	ENST00000521508.1	chr13	52586549:52586598:52593048:52593279:52598141:52599073,	52593049	52593279	52593151	52593152	Frame_Shift_Ins	-	A	p.KK49fs
ESCA	TCGA-L5-A8NM-01	TTC5	ENST00000554157.1,ENST00000258821.3,ENST00000423949.2,ENST00000383029.3	chr14	20763470:20763685:20763866:20764013:20764548:20764605,	20763867	20764013	20763965	20763966	Frame_Shift_Del	GA	-	p.SR248fs
ESCA	TCGA-L5-A8NM-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
ESCA	TCGA-L5-A8NM-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
ESCA	TCGA-L5-A8NM-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28117008:28117068:28171272:28171400:28196929:28197038,	28171273	28171400	28171296	28171297	Frame_Shift_Ins	-	A	p.S686fs
ESCA	TCGA-L5-A8NM-01	GATM	ENST00000558336.1	chr15	45661580:45661719:45668798:45669017:45689119:45689280,45661580:45661719:45668798:45669017:45670582:45670682,	45668799	45669017	45668948	45668948	Frame_Shift_Del	G	-	p.R47fs
ESCA	TCGA-L5-A8NM-01	VPS13C	ENST00000261517.5,ENST00000395896.4	chr15	62315609:62315719:62315978:62316044:62320556:62320619,	62315979	62316044	62316019	62316019	Frame_Shift_Del	T	-	p.K158fs
ESCA	TCGA-L5-A8NM-01	CREBBP	ENST00000382070.3	chr16	3860603:3860780:3900297:3901010:3929832:3930121,	3900298	3901010	3900661	3900661	Frame_Shift_Del	G	-	p.P145fs
ESCA	TCGA-L5-A8NM-01	WWP2	ENST00000359154.2,ENST00000570104.1,ENST00000544162.1,ENST00000448661.1,ENST00000356003.2,ENST00000569174.1,ENST00000542271.1	chr16	69905706:69905834:69921941:69922152:69942663:69942753,	69921942	69922152	69921970	69921971	Frame_Shift_Ins	-	C	p.R245fs
ESCA	TCGA-L5-A8NM-01	MSL1	ENST00000579565.1,ENST00000577454.1,ENST00000578648.1	chr17	38279537:38279633:38282435:38282659:38285497:38285513,	38282436	38282659	38282534	38282535	Frame_Shift_Del	AG	-	p.EE289fs
ESCA	TCGA-L5-A8NM-01	ABCA10	ENST00000519732.1	chr17	67161104:67161224:67170421:67170535:67170747:67170918,67161104:67161224:67170421:67170535:67171546:67171654,	67170422	67170535	67170425	67170425	Frame_Shift_Del	A	-	p.F1053fs
ESCA	TCGA-L5-A8NM-01	CHAF1A	ENST00000301280.5	chr19	4418025:4418073:4422562:4422792:4423331:4423392,	4422563	4422792	4422628	4422629	Frame_Shift_Del	AG	-	p.KE361fs
ESCA	TCGA-L5-A8NM-01	RFX2	ENST00000586806.1	chr19	6016100:6016282:6026173:6026248:6039990:6040252,6016100:6016282:6026173:6026248:6110403:6110457,	6026174	6026248	6026217	6026218	Frame_Shift_Ins	-	T	p.R185fs
ESCA	TCGA-L5-A8NM-01	EML2	ENST00000245925.3,ENST00000586195.1,ENST00000587152.1,ENST00000536630.1,ENST00000399594.3,ENST00000586902.1,ENST00000588000.1,ENST00000589876.1,ENST00000590580.1,ENST00000588308.1	chr19	46124811:46124895:46129962:46130097:46133208:46133290,46127977:46128076:46129962:46130097:46136118:46136229,46127977:46128076:46129962:46130097:46133208:46133290,	46129963	46130097	46129994	46129994	Frame_Shift_Del	C	-	p.G384fs
ESCA	TCGA-L5-A8NM-01	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3520868:3520982:3526408:3526537:3527930:3528136,	3526409	3526537	3526487	3526487	Frame_Shift_Del	T	-	p.H229fs
ESCA	TCGA-L5-A8NM-01	DSN1	ENST00000373750.4,ENST00000447406.1,ENST00000426836.1,ENST00000373745.3	chr20	35396371:35396445:35399275:35399596:35402064:35402123,35396371:35396445:35399275:35399596:35399827:35399876,	35399276	35399596	35399448	35399448	Frame_Shift_Del	T	-	p.K61fs
ESCA	TCGA-L5-A8NM-01	DSN1	ENST00000480153.1	chr20	35396371:35396445:35399275:35399876:35402064:35402123,	35399276	35399876	35399448	35399448	Frame_Shift_Del	T	-	p.K61fs
ESCA	TCGA-L5-A8NM-01	SOGA1	ENST00000456801.2,ENST00000465671.1	chr20	35412184:35412761:35414812:35415040:35421651:35423002,	35414813	35415040	35414897	35414897	Frame_Shift_Del	G	-	p.P1659fs
ESCA	TCGA-L5-A8NM-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47570301:47570439:47571471:47571651:47571805:47571894,	47571472	47571651	47571590	47571591	Frame_Shift_Ins	-	C	p.H173fs
ESCA	TCGA-L5-A8NM-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417669	40417670	Frame_Shift_Ins	-	C	p.LP385fs
ESCA	TCGA-L5-A8NM-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564716	42564716	Frame_Shift_Del	G	-	p.P1942fs
ESCA	TCGA-L5-A8NM-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L574fs
ESCA	TCGA-L5-A8NQ-01	COL21A1	ENST00000535941.1,ENST00000370819.1,ENST00000244728.5,ENST00000467045.1	chr6	55923962:55924040:55924815:55925016:55925538:55925593,	55924816	55925016	55924944	55924945	Frame_Shift_Ins	-	GGGAGCC	p.-827fs
ESCA	TCGA-L5-A8NQ-01	CSE1L	ENST00000469700.1,ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47708582:47708664:47710676:47710823:47711268:47711500,	47710677	47710823	47710696	47710697	Frame_Shift_Ins	-	A	p.K823fs
ESCA	TCGA-L5-A8NR-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42072477	42072477	Frame_Shift_Del	C	-	p.G1058fs
ESCA	TCGA-L5-A8NS-01	SLC22A5	ENST00000415928.1,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1	chr5	131719838:131719993:131721019:131721191:131722716:131722843,	131721020	131721191	131721070	131721071	Frame_Shift_Del	GT	-	p.V235fs
ESCA	TCGA-L5-A8NS-01	SHROOM2	ENST00000418909.2,ENST00000380913.3,ENST00000452575.1	chrX	9900214:9900910:9905173:9905725:9907234:9907406,	9905174	9905725	9905351	9905360	Frame_Shift_Del	GTTCTACTCG	-	p.QFYS1255fs
ESCA	TCGA-L5-A8NS-01	SHROOM2	ENST00000418909.2,ENST00000380913.3,ENST00000452575.1	chrX	9900214:9900910:9905173:9905725:9907234:9907406,	9905174	9905725	9905366	9905367	Frame_Shift_Ins	-	T	p.LS1260fs
ESCA	TCGA-L5-A8NT-01	C1orf127	ENST00000520253.1,ENST00000377004.4	chr1	11014075:11014199:11015046:11015243:11017079:11017164,	11015047	11015243	11015170	11015171	Frame_Shift_Ins	-	GAAC	p.L284fs
ESCA	TCGA-L5-A8NT-01	DPY19L2	ENST00000324472.4,ENST00000439061.2,ENST00000413230.2	chr12	63954130:63954442:63963003:63963129:63964537:63964637,	63963004	63963129	63963039	63963040	Frame_Shift_Del	AT	-	p.Y697fs
ESCA	TCGA-L5-A8NU-01	JPH3	ENST00000537256.1,ENST00000284262.2,ENST00000563609.1	chr16	87717747:87717872:87723251:87724132:87730185:87730408,	87723252	87724132	87723837	87723838	Frame_Shift_Ins	-	C	p.P624fs
ESCA	TCGA-L5-A8NW-01	TYMP	ENST00000425169.1	chr22	50966940:50967039:50967564:50967767:50967924:50968148,50966016:50966146:50967564:50967767:50967924:50968148,	50967565	50967767	50967742	50967742	Frame_Shift_Del	A	-	p.L80fs
ESCA	TCGA-L7-A56G-01	TMEM254	ENST00000472622.1	chr10	81841596:81841700:81841900:81841973:81850552:81850694,	81841901	81841973	81841942	81841943	Frame_Shift_Ins	-	T	p.C78fs
ESCA	TCGA-L7-A56G-01	TMEM254	ENST00000463029.1,ENST00000372273.3,ENST00000467529.1,ENST00000372281.3,ENST00000483732.1,ENST00000450179.1	chr10	81841596:81841700:81841900:81841960:81850552:81850694,	81841901	81841960	81841942	81841943	Frame_Shift_Ins	-	T	p.C78fs
ESCA	TCGA-L7-A56G-01	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71800476:71801025:71802247:71802448:71804098:71804152,	71802248	71802448	71802435	71802435	Frame_Shift_Del	T	-	p.E1062fs
ESCA	TCGA-LN-A49K-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579321	7579322	Frame_Shift_Del	CA	-	p.V122fs
ESCA	TCGA-LN-A49M-01	PABPC4	ENST00000421687.2,ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000470443.1,ENST00000372862.3	chr1	40033422:40033518:40034473:40034611:40035266:40035361,	40034474	40034611	40034566	40034567	Frame_Shift_Del	AT	-	p.IF261fs
ESCA	TCGA-LN-A49M-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55243392:55243417:55247291:55247432:55247756:55247903,	55247292	55247432	55247381	55247385	Frame_Shift_Del	CTAGT	-	p.TS583fs
ESCA	TCGA-LN-A49N-01	ETFDH	ENST00000307738.5,ENST00000511912.1	chr4	159620138:159620282:159624574:159624743:159627340:159627523,	159624575	159624743	159624578	159624579	Frame_Shift_Ins	-	T	p.T374fs
ESCA	TCGA-LN-A49N-01	ERP27	ENST00000266397.2,ENST00000540097.1	chr12	15068422:15068620:15070111:15070237:15073865:15073982,	15070112	15070237	15070212	15070224	Frame_Shift_Del	ACGCTGTTGAATA	-	p.LFNSV155fs
ESCA	TCGA-LN-A49O-01	NSUN4	ENST00000471871.1,ENST00000474844.1,ENST00000537428.1,ENST00000536062.1,ENST00000495427.1,ENST00000498008.1,ENST00000307089.3	chr1	46818539:46818700:46826375:46826500:46827241:46827666,	46826376	46826500	46826379	46826380	Frame_Shift_Ins	-	T	p.G253fs
ESCA	TCGA-LN-A49P-01	MYRF	ENST00000278836.5,ENST00000265460.5	chr11	61536731:61536793:61537717:61537997:61538971:61539222,	61537718	61537997	61537890	61537893	Frame_Shift_Del	CCCG	-	p.PP211fs
ESCA	TCGA-LN-A49P-01	MYRF	ENST00000278836.5,ENST00000265460.5	chr11	61536731:61536793:61537717:61537997:61538971:61539222,	61537718	61537997	61537895	61537907	Frame_Shift_Del	TCCCCCACTACGC	-	p.IPHYA213fs
ESCA	TCGA-LN-A49R-01	COL17A1	ENST00000369733.3,ENST00000433822.1,ENST00000353479.5	chr10	105791961:105792048:105792431:105792512:105792663:105792726,	105792432	105792512	105792467	105792468	Frame_Shift_Ins	-	CA	p.P1468fs
ESCA	TCGA-LN-A49R-01	ESRP2	ENST00000473183.2	chr16	68266479:68266590:68266663:68266718:68267229:68267328,	68266664	68266718	68266687	68266688	Frame_Shift_Ins	-	T	p.T229fs
ESCA	TCGA-LN-A49X-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573291	242573292	Frame_Shift_Ins	-	C	p.W94fs
ESCA	TCGA-LN-A49X-01	KRT14	ENST00000476662.1,ENST00000167586.6	chr17	39739807:39739928:39740011:39740173:39740508:39740665,	39740012	39740173	39740052	39740058	Frame_Shift_Del	TCTGCCA	-	p.MAE294fs
ESCA	TCGA-LN-A4A1-01	C17orf58	ENST00000334461.7	chr17	65987245:65988219:65989016:65989351:65989539:65989640,	65989017	65989351	65989212	65989213	Frame_Shift_Ins	-	A	p.I17fs
ESCA	TCGA-LN-A4A2-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000373272.2	chr20	39798828:39798909:39800832:39800929:39801060:39801285,	39800833	39800929	39800921	39800922	Frame_Shift_Ins	-	G	p.G966fs
ESCA	TCGA-LN-A4A2-01	PLXNB2	ENST00000496720.1	chr22	50722261:50722419:50722560:50722673:50723001:50723034,	50722561	50722673	50722580	50722589	Frame_Shift_Del	ATTCTTGCCG	-	p.YGKN745fs
ESCA	TCGA-LN-A4A2-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50722261:50722419:50722560:50722642:50723001:50723034,	50722561	50722642	50722580	50722589	Frame_Shift_Del	ATTCTTGCCG	-	p.YGKN745fs
ESCA	TCGA-LN-A4A4-01	EML3	ENST00000531557.1,ENST00000494176.2,ENST00000278845.4,ENST00000529309.1,ENST00000394773.2,ENST00000483199.1,ENST00000494448.1,ENST00000460939.1,ENST00000394776.4	chr11	62371584:62371673:62372584:62372652:62373113:62373154,	62372585	62372652	62372637	62372638	Frame_Shift_Del	CA	-	p.CA643fs
ESCA	TCGA-LN-A4A6-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859371	48859372	Frame_Shift_Ins	-	A	p.Q230fs
ESCA	TCGA-LN-A4A8-01	CMTM3	ENST00000424011.2,ENST00000566756.1,ENST00000562707.1,ENST00000565003.1,ENST00000562357.1,ENST00000563672.1,ENST00000567572.1,ENST00000361909.4	chr16	66638797:66638855:66642211:66642367:66643785:66643906,66638797:66638855:66642211:66642367:66643337:66643383,	66642212	66642367	66642288	66642289	Frame_Shift_Ins	-	CC	p.S75fs
ESCA	TCGA-LN-A4A9-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194146070:194146258:194147803:194147981:194149573:194149646,	194147804	194147981	194147849	194147850	Frame_Shift_Ins	-	A	p.G1027fs
ESCA	TCGA-LN-A4MQ-01	ARF4	ENST00000486310.1,ENST00000303436.6,ENST00000496292.1,ENST00000463880.1	chr3	57561349:57561400:57563042:57563114:57582800:57582925,57561349:57561400:57563042:57563114:57569624:57569734,	57563043	57563114	57563091	57563092	Frame_Shift_Ins	-	CGAT	p.K94fs
ESCA	TCGA-LN-A4MQ-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726383	71726384	Frame_Shift_Ins	-	T	p.T722fs
ESCA	TCGA-LN-A5U6-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579497	7579498	Frame_Shift_Del	GA	-	p.AP63fs
ESCA	TCGA-LN-A5U6-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000479818.1,ENST00000449103.1	chr22	50715057:50715133:50715270:50715335:50716019:50716167,	50715271	50715335	50715316	50715316	Frame_Shift_Del	A	-	p.L1740fs
ESCA	TCGA-LN-A5U7-01	POGZ	ENST00000409503.1,ENST00000531094.1	chr1	151397430:151397537:151400298:151400490:151400598:151400889,	151400299	151400490	151400365	151400365	Frame_Shift_Del	C	-	p.V339fs
ESCA	TCGA-LN-A5U7-01	POGZ	ENST00000271715.2,ENST00000361398.3,ENST00000358476.3,ENST00000368863.2,ENST00000392723.1,ENST00000491586.1	chr1	151397430:151397537:151400298:151400517:151400598:151400889,	151400299	151400517	151400365	151400365	Frame_Shift_Del	C	-	p.V339fs
ESCA	TCGA-LN-A7HV-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117254666:117254767:117267575:117267824:117282491:117282647,	117267576	117267824	117267663	117267664	Frame_Shift_Ins	-	AA	p.T1186fs
ESCA	TCGA-LN-A7HX-01	LIN9	ENST00000460719.1,ENST00000481685.1,ENST00000366801.1	chr1	226474033:226474159:226475364:226475498:226485419:226485514,	226475365	226475498	226475472	226475476	Frame_Shift_Del	TGGTG	-	p.TP112fs
ESCA	TCGA-LN-A7HX-01	GIPC1	ENST00000345425.2	chr19	14591404:14591590:14593500:14593818:14602467:14602555,14591404:14591590:14593500:14593818:14606848:14606864,	14593501	14593818	14593663	14593664	Frame_Shift_Ins	-	C	p.A42fs
ESCA	TCGA-LN-A7HY-01	IFI16	ENST00000430894.2,ENST00000359709.3	chr1	158985667:158985777:158988018:158988441:158990130:158990319,	158988019	158988441	158988029	158988035	Frame_Shift_Del	CAGTGGC	-	p.TVA187fs
ESCA	TCGA-LN-A7HZ-01	F12	ENST00000503736.1	chr5	176830859:176831091:176831196:176831414:176831810:176831915,	176831197	176831414	176831321	176831322	Frame_Shift_Ins	-	G	p.H298fs
ESCA	TCGA-LN-A8I0-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508454	195508455	Frame_Shift_Ins	-	C	p.P3333fs
ESCA	TCGA-LN-A8I1-01	ZWILCH	ENST00000446801.2,ENST00000564179.1,ENST00000307897.5,ENST00000535141.2,ENST00000565627.1	chr15	66807863:66807982:66811216:66811416:66812927:66812995,	66811217	66811416	66811367	66811370	Frame_Shift_Del	AACA	-	p.TT157fs
ESCA	TCGA-LN-A8I1-01	SREBF2	ENST00000361204.4	chr22	42273232:42273425:42273945:42274127:42276719:42276996,	42273946	42274127	42274003	42274004	Frame_Shift_Del	GT	-	p.G546fs
ESCA	TCGA-LN-A9FP-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
ESCA	TCGA-LN-A9FP-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
ESCA	TCGA-LN-A9FR-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5790956	5790956	Frame_Shift_Del	A	-	p.K1859fs
ESCA	TCGA-M9-A5M8-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471452	93471453	Frame_Shift_Ins	-	T	p.K94fs
ESCA	TCGA-M9-A5M8-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471452	93471453	Frame_Shift_Ins	-	T	p.K94fs
ESCA	TCGA-R6-A6DN-01	CFLAR	ENST00000309955.3,ENST00000341582.6,ENST00000423241.2,ENST00000474842.1,ENST00000443227.1	chr2	202014476:202014558:202025154:202025665:202027718:202027803,202014476:202014558:202025154:202025665:202028557:202028696,	202025155	202025665	202025661	202025661	Frame_Shift_Del	G	-	p.E434fs
ESCA	TCGA-R6-A6DN-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117232235:117232711:117234983:117235112:117242879:117242917,	117234984	117235112	117235062	117235062	Frame_Shift_Del	A	-	p.K857fs
ESCA	TCGA-R6-A6DQ-01	KIAA0753	ENST00000361413.3	chr17	6531938:6532061:6538330:6538491:6543956:6543972,	6538331	6538491	6538418	6538418	Frame_Shift_Del	T	-	p.G2fs
ESCA	TCGA-R6-A6L4-01	CAPN15	ENST00000219611.2	chr16	586028:586142:596816:598287:598992:599201,	596817	598287	598175	598175	Frame_Shift_Del	G	-	p.R446fs
ESCA	TCGA-R6-A6L6-01	GRB7	ENST00000394204.1,ENST00000309185.3	chr17	37901983:37902041:37902361:37902455:37903003:37903241,	37902362	37902455	37902406	37902407	Frame_Shift_Ins	-	C	p.A468fs
ESCA	TCGA-R6-A6XG-01	EVI5	ENST00000492613.1,ENST00000370331.1,ENST00000540033.1	chr1	93091350:93091491:93101758:93101893:93128976:93129009,93091350:93091491:93101758:93101893:93131495:93131512,	93101759	93101893	93101861	93101861	Frame_Shift_Del	A	-	p.F459fs
ESCA	TCGA-R6-A6XG-01	DBF4	ENST00000431138.1	chr7	87505914:87506093:87507367:87507448:87514293:87514473,	87507368	87507448	87507388	87507389	Frame_Shift_Ins	-	A	p.K23fs
ESCA	TCGA-R6-A6XG-01	DBF4	ENST00000486925.1,ENST00000430279.1,ENST00000265728.1	chr7	87505914:87506093:87507367:87507540:87514293:87514473,	87507368	87507540	87507388	87507389	Frame_Shift_Ins	-	A	p.K23fs
ESCA	TCGA-R6-A6XG-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559127	56559128	Frame_Shift_Ins	-	G	p.R1069fs
ESCA	TCGA-R6-A6XG-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.HP1875fs
ESCA	TCGA-R6-A6XQ-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345574	23345577	Frame_Shift_Del	GAGA	-	p.GE185fs
ESCA	TCGA-R6-A6Y0-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074771	31074772	Frame_Shift_Ins	-	A	p.IK357fs
ESCA	TCGA-R6-A8W8-01	TENM3	ENST00000511685.1,ENST00000406950.2	chr4	183245173:183245405:183267803:183268082:183522076:183522314,	183267804	183268082	183267981	183267981	Frame_Shift_Del	G	-	p.R137fs
ESCA	TCGA-R6-A8W8-01	CPED1	ENST00000310396.5	chr7	120907268:120907356:120911337:120911484:120935493:120935652,	120911338	120911484	120911387	120911388	Frame_Shift_Ins	-	A	p.E924fs
ESCA	TCGA-R6-A8W8-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46567250:46567326:46568662:46568846:46569366:46569425,	46568663	46568846	46568813	46568813	Frame_Shift_Del	A	-	p.N76fs
ESCA	TCGA-R6-A8WC-01	CSMD1	ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2823296:2823476:2824091:2824268:2830638:2830821,	2824092	2824268	2824141	2824141	Frame_Shift_Del	C	-	p.R3018fs
ESCA	TCGA-R6-A8WC-01	HNRNPH3	ENST00000441000.2	chr10	70091878:70091973:70096955:70097090:70097614:70097753,70091873:70091992:70096955:70097090:70098259:70098399,70091878:70091973:70096955:70097090:70098896:70098958,	70096956	70097090	70096998	70096999	Frame_Shift_Del	AT	-	p.H7fs
ESCA	TCGA-R6-A8WC-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47273470:47273538:47275255:47275342:47279202:47279292,	47275256	47275342	47275284	47275285	Frame_Shift_Ins	-	AT	p.Y448fs
ESCA	TCGA-R6-A8WC-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301005	18301005	Frame_Shift_Del	C	-	p.R1474fs
ESCA	TCGA-S8-A6BW-01	MLXIPL	ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3	chr7	73011194:73011262:73011511:73012043:73013855:73013996,	73011512	73012043	73011560	73011561	Frame_Shift_Ins	-	G	p.H519fs
ESCA	TCGA-S8-A6BW-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143096030	143096031	Frame_Shift_Ins	-	G	p.G334fs
ESCA	TCGA-V5-A7RB-01	SLC37A3	ENST00000484416.1	chr7	140051230:140051251:140051861:140051981:140055467:140055564,	140051862	140051981	140051914	140051914	Frame_Shift_Del	A	-	p.F217fs
ESCA	TCGA-V5-A7RB-01	SLC37A3	ENST00000490760.1,ENST00000326232.9,ENST00000340308.3,ENST00000447932.2	chr7	140051230:140051251:140051861:140051946:140055467:140055564,	140051862	140051946	140051914	140051914	Frame_Shift_Del	A	-	p.F217fs
ESCA	TCGA-V5-A7RC-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971154	21971155	Frame_Shift_Del	CG	-	p.RG82fs
ESCA	TCGA-V5-A7RC-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971154	21971155	Frame_Shift_Del	CG	-	p.RG82fs
ESCA	TCGA-V5-A7RC-06	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114751	57114752	Frame_Shift_Del	AG	-	p.L188fs
ESCA	TCGA-V5-A7RC-06	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114751	57114752	Frame_Shift_Del	AG	-	p.L188fs
ESCA	TCGA-V5-A7RC-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648545	85648546	Frame_Shift_Ins	-	A	p.*594fs
ESCA	TCGA-V5-A7RC-01	SPAG17	ENST00000336338.5	chr1	118574368:118574490:118579392:118579506:118581914:118581965,	118579393	118579506	118579442	118579443	Frame_Shift_Ins	-	T	p.R1128fs
ESCA	TCGA-V5-A7RC-01	SPAG17	ENST00000486589.1	chr1	118574368:118574490:118579248:118579506:118581914:118581965,	118579249	118579506	118579442	118579443	Frame_Shift_Ins	-	T	p.R1128fs
ESCA	TCGA-V5-A7RC-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114751	57114752	Frame_Shift_Del	AG	-	p.L188fs
ESCA	TCGA-V5-A7RC-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114751	57114752	Frame_Shift_Del	AG	-	p.L188fs
ESCA	TCGA-V5-A7RE-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430251	115430252	Frame_Shift_Ins	-	A	p.K399fs
ESCA	TCGA-V5-A7RE-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60630600:60630705:60639746:60639941:60642629:60642858,	60639747	60639941	60639886	60639887	Frame_Shift_Ins	-	A	p.K722fs
ESCA	TCGA-V5-AASV-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646207	215646208	Frame_Shift_Del	TT	-	p.KS130fs
ESCA	TCGA-V5-AASV-01	SLC4A9	ENST00000507527.1,ENST00000230993.6,ENST00000506757.2	chr5	139745104:139745154:139745418:139745607:139745735:139745849,139745104:139745163:139745418:139745607:139745735:139745849,	139745419	139745607	139745542	139745545	Frame_Shift_Del	CTTA	-	p.LT636fs
ESCA	TCGA-V5-AASV-01	POLR1C	ENST00000428025.2,ENST00000372389.3,ENST00000304004.3,ENST00000372344.2	chr6	43487443:43487576:43487803:43487923:43488012:43488050,	43487804	43487923	43487822	43487825	Frame_Shift_Del	AGAT	-	p.EI134fs
ESCA	TCGA-V5-AASW-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194140607:194140696:194146070:194146258:194147803:194147981,	194146071	194146258	194146150	194146150	Frame_Shift_Del	A	-	p.F1078fs
ESCA	TCGA-V5-AASW-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000560764.1,ENST00000537840.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57524909:57525054:57526240:57526305:57535669:57535713,	57526241	57526305	57526275	57526276	Frame_Shift_Ins	-	CT	p.*336fs
ESCA	TCGA-V5-AASX-01	ZMYM2	ENST00000382871.2,ENST00000382874.2,ENST00000382869.3	chr13	20580513:20580726:20593686:20593758:20600751:20600902,	20593687	20593758	20593738	20593741	Frame_Shift_Del	TCTT	-	p.SF522fs
ESCA	TCGA-VR-A8EO-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577115	7577115	Frame_Shift_Del	A	-	p.C275fs
ESCA	TCGA-VR-A8EP-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508450	195508450	Frame_Shift_Del	G	-	p.P3334fs
ESCA	TCGA-VR-A8EP-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508454	195508455	Frame_Shift_Ins	-	C	p.P3333fs
ESCA	TCGA-VR-A8EQ-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548603	165548604	Frame_Shift_Ins	-	T	p.T73fs
ESCA	TCGA-VR-A8EQ-01	GPC2	ENST00000480087.1,ENST00000471050.1,ENST00000292377.2,ENST00000490629.1	chr7	99769812:99769840:99771457:99771620:99772307:99772347,	99771458	99771620	99771554	99771554	Frame_Shift_Del	C	-	p.V266fs
ESCA	TCGA-VR-A8EX-01	ACAT1	ENST00000528370.1,ENST00000265838.4	chr11	108004947:108005043:108005868:108005969:108009624:108009768,	108005869	108005969	108005929	108005930	Frame_Shift_Ins	-	CT	p.D132fs
ESCA	TCGA-VR-A8EY-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705894	35705894	Frame_Shift_Del	A	-	p.A878fs
ESCA	TCGA-VR-A8EZ-01	RPL30	ENST00000396070.2	chr8	99054034:99054078:99054872:99054946:99057170:99057316,	99054873	99054946	99054886	99054886	Frame_Shift_Del	A	-	p.A95fs
ESCA	TCGA-VR-A8EZ-01	RPL30	ENST00000287038.3,ENST00000521726.1,ENST00000521291.1	chr8	99054034:99054078:99054872:99055003:99057170:99057316,	99054873	99055003	99054886	99054886	Frame_Shift_Del	A	-	p.A95fs
ESCA	TCGA-VR-A8EZ-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735965	4735966	Frame_Shift_Ins	-	C	p.G701fs
ESCA	TCGA-VR-A8EZ-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735970	4735970	Frame_Shift_Del	A	-	p.S700fs
ESCA	TCGA-VR-AA7B-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580047	7580048	Frame_Shift_Ins	-	AAGT	p.V1209fs
ESCA	TCGA-VR-AA7B-01	MCM3	ENST00000596288.1,ENST00000476448.1,ENST00000419835.2,ENST00000229854.7	chr6	52141864:52141996:52142332:52142486:52143539:52143648,	52142333	52142486	52142452	52142470	Frame_Shift_Del	GGGGCCAATGACTTGGCCA	-	p.LAKSLAP344fs
ESCA	TCGA-VR-AA7B-01	ZC3H13	ENST00000378921.2,ENST00000242848.4	chr13	46533617:46533781:46537976:46538177:46539414:46539564,	46537977	46538177	46538007	46538010	Frame_Shift_Del	TTTC	-	p.ET1547fs
ESCA	TCGA-VR-AA7D-01	NPHP3	ENST00000471702.1,ENST00000337331.5,ENST00000490993.1	chr3	132413670:132413809:132415574:132415657:132416103:132416206,	132415575	132415657	132415603	132415604	Frame_Shift_Ins	-	A	p.H715fs
ESCA	TCGA-XP-A8T7-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186665038	186665039	Frame_Shift_Ins	-	A	p.K3758fs
ESCA	TCGA-XP-A8T7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577062	7577062	Frame_Shift_Del	T	-	p.K292fs
ESCA	TCGA-XP-A8T8-01	GRHL1	ENST00000439493.1	chr2	10095043:10095230:10098914:10099093:10101174:10101211,	10098915	10099093	10098951	10098951	Frame_Shift_Del	G	-	p.E82fs
ESCA	TCGA-XP-A8T8-01	GRHL1	ENST00000324883.5,ENST00000464418.1,ENST00000324907.9,ENST00000405379.2,ENST00000472167.1	chr2	10095043:10095230:10098914:10098985:10101174:10101211,	10098915	10098985	10098951	10098951	Frame_Shift_Del	G	-	p.E82fs
ESCA	TCGA-XP-A8T8-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098371	144098371	Frame_Shift_Del	C	-	p.G204fs
ESCA	TCGA-Z6-A9VB-01	ODF3B	ENST00000437588.1,ENST00000329363.4	chr22	50970173:50970202:50970397:50970540:50970905:50971008,	50970398	50970540	50970479	50970479	Frame_Shift_Del	A	-	p.W10fs
ESCA	TCGA-ZR-A9CJ-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016221	1016224	Frame_Shift_Del	CAGA	-	p.SA2193fs
ESCA	TCGA-L5-A8NM-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1	chr4	57244313:57244630:57248642:57248763:57250235:57250465,	57248643	57248763	57248651	57248652	Frame_Shift_Ins	-	T	p.Q114fs
ESCA	TCGA-VR-A8EO-01	ABCC4	ENST00000538287.1,ENST00000376887.4,ENST00000412704.1,ENST00000431522.1	chr13	95862945:95863035:95886863:95887088:95899228:95899349,	95886864	95887088	95887085	95887085	Frame_Shift_Del	T	-	p.S104fs
ESCA	TCGA-L5-A43J-01	ACAT1	ENST00000527942.1,ENST00000299355.6,ENST00000524833.1,ENST00000265838.4,ENST00000531853.1,ENST00000531813.1	chr11	108002633:108002681:108004546:108004664:108004947:108004971,	108004547	108004664	108004588	108004588	Frame_Shift_Del	T	-	p.L56fs
ESCA	TCGA-VR-A8EX-01	ACAT1	ENST00000528370.1,ENST00000265838.4	chr11	108004947:108005043:108005868:108005969:108009624:108009768,	108005869	108005969	108005929	108005930	Frame_Shift_Ins	-	CT	p.I133fs
ESCA	TCGA-VR-AA7D-01	ACHE	ENST00000442452.1	chr7	100488789:100488959:100489954:100490264:100490785:100491525,	100489955	100490264	100490031	100490032	Frame_Shift_Ins	-	G	p.S492fs
ESCA	TCGA-VR-AA7D-01	ACHE	ENST00000419336.2	chr7	100488789:100488959:100489954:100490175:100490785:100491525,	100489955	100490175	100490031	100490032	Frame_Shift_Ins	-	G	p.S492fs
ESCA	TCGA-VR-AA7D-01	ACHE	ENST00000412389.1,ENST00000241069.5,ENST00000411582.1,ENST00000428317.1,ENST00000302913.4	chr7	100488789:100488959:100489954:100490439:100490785:100491525,	100489955	100490439	100490031	100490032	Frame_Shift_Ins	-	G	p.S492fs
ESCA	TCGA-L5-A4OI-01	ADAM32	ENST00000379907.4	chr8	39044427:39044564:39068662:39068843:39079128:39079221,	39068663	39068843	39068767	39068767	Frame_Shift_Del	A	-	p.K388fs
ESCA	TCGA-L5-A43J-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.I395fs
ESCA	TCGA-L5-A4OI-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.I395fs
ESCA	TCGA-Z6-A9VB-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680350	18680350	Frame_Shift_Del	G	-	p.G395fs
ESCA	TCGA-L5-A4OI-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530505	150530506	Frame_Shift_Ins	-	G	p.G780fs
ESCA	TCGA-IG-A5B8-01	AEBP1	ENST00000223357.3	chr7	44147227:44147299:44147407:44147530:44147605:44147683,	44147408	44147530	44147454	44147454	Frame_Shift_Del	A	-	p.R263fs
ESCA	TCGA-L5-A8NM-01	AGBL3	ENST00000359383.3,ENST00000476700.1	chr7	134674000:134674061:134678243:134678429:134701802:134701910,134674000:134674061:134678243:134678429:134694792:134695016,	134678244	134678429	134678279	134678280	Frame_Shift_Del	AC	-	p.Q29fs
ESCA	TCGA-L5-A43J-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100376267:100376403:100377960:100378073:100379082:100379294,	100377961	100378073	100378027	100378028	Frame_Shift_Ins	-	A	p.N1303fs
ESCA	TCGA-LN-A9FQ-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673526	151673527	Frame_Shift_Del	GA	-	p.E1336fs
ESCA	TCGA-L5-A4OI-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603085	91603085	Frame_Shift_Del	A	-	p.K51fs
ESCA	TCGA-L5-A8NM-01	ALG11	ENST00000521508.1	chr13	52586549:52586598:52593048:52593279:52598141:52599073,	52593049	52593279	52593151	52593152	Frame_Shift_Ins	-	A	p.L51fs
ESCA	TCGA-2H-A9GQ-01	ALG5	ENST00000496689.1,ENST00000413537.2,ENST00000239891.3	chr13	37559785:37559877:37563620:37563713:37567740:37567809,	37563621	37563713	37563639	37563639	Frame_Shift_Del	T	-	p.G144fs
ESCA	TCGA-L5-A4OR-01	ALOX15B	ENST00000572022.1,ENST00000380173.2,ENST00000380183.4,ENST00000573359.1,ENST00000571240.1	chr17	7946106:7946202:7948146:7948319:7948555:7948702,	7948147	7948319	7948301	7948301	Frame_Shift_Del	C	-	p.L278fs
ESCA	TCGA-VR-A8ET-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819645	53819645	Frame_Shift_Del	G	-	p.G267fs
ESCA	TCGA-V5-AASW-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277685	114277685	Frame_Shift_Del	A	-	p.K2638fs
ESCA	TCGA-L5-A4OI-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280135	114280135	Frame_Shift_Del	G	-	p.G3456fs
ESCA	TCGA-L5-A4OI-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349640	89349641	Frame_Shift_Ins	-	T	p.D1103fs
ESCA	TCGA-L5-A88S-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349640	89349641	Frame_Shift_Ins	-	T	p.D1103fs
ESCA	TCGA-L5-A4OI-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334907	Frame_Shift_Del	T	-	p.K923fs
ESCA	TCGA-LN-A7HX-01	APEH	ENST00000296456.5,ENST00000462439.1,ENST00000449966.1,ENST00000491799.1,ENST00000442186.1,ENST00000438011.1	chr3	49713323:49713399:49713488:49713652:49714041:49714133,49713323:49713399:49713488:49713652:49713810:49713939,	49713489	49713652	49713493	49713493	Frame_Shift_Del	C	-	p.F150fs
ESCA	TCGA-LN-A7HX-01	APEH	ENST00000463995.1	chr3	49713323:49713399:49713488:49713948:49714041:49714133,	49713489	49713948	49713493	49713493	Frame_Shift_Del	C	-	p.F150fs
ESCA	TCGA-L5-A4OI-01	APOC1	ENST00000592885.1	chr19	45418130:45418206:45419446:45419727:45422429:45422466,	45419447	45419727	45419665	45419666	Frame_Shift_Ins	-	A	p.T96fs
ESCA	TCGA-R6-A6Y0-01	APOC1	ENST00000592885.1	chr19	45418130:45418206:45419446:45419727:45422429:45422466,	45419447	45419727	45419665	45419666	Frame_Shift_Ins	-	A	p.T96fs
ESCA	TCGA-L5-A4OR-01	APOC1	ENST00000592885.1	chr19	45418130:45418206:45419446:45419727:45422429:45422466,	45419447	45419727	45419666	45419666	Frame_Shift_Del	A	-	p.T96fs
ESCA	TCGA-L5-A8NM-01	APOC1	ENST00000592885.1	chr19	45418130:45418206:45419446:45419727:45422429:45422466,	45419447	45419727	45419666	45419666	Frame_Shift_Del	A	-	p.T96fs
ESCA	TCGA-LN-A9FR-01	APOH	ENST00000577982.1,ENST00000205948.6,ENST00000581797.1	chr17	64216731:64216860:64219815:64219892:64222145:64222242,	64219816	64219892	64219888	64219888	Frame_Shift_Del	A	-	p.Y115fs
ESCA	TCGA-L5-A4OI-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3	chr12	105583768:105583933:105589038:105589127:105589222:105589279,	105589039	105589127	105589058	105589059	Frame_Shift_Ins	-	T	p.Q413fs
ESCA	TCGA-V5-A7RE-01	ARHGDIG	ENST00000447871.1,ENST00000219409.3	chr16	318725:319004:331745:331925:332024:332084,330605:330753:331745:331925:332024:332084,	331746	331925	331883	331883	Frame_Shift_Del	A	-	p.K71fs
ESCA	TCGA-JY-A93E-01	ARHGEF25	ENST00000333972.7,ENST00000286494.4,ENST00000471370.1	chr12	58009294:58009495:58009619:58009800:58010066:58010278,	58009620	58009800	58009787	58009788	Frame_Shift_Ins	-	T	p.D508fs
ESCA	TCGA-JY-A93F-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097621	27097622	Frame_Shift_Ins	-	A	p.W1072fs
ESCA	TCGA-L5-A4OI-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823494	114823494	Frame_Shift_Del	T	-	p.K579fs
ESCA	TCGA-L5-A8NM-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823494	114823494	Frame_Shift_Del	T	-	p.K579fs
ESCA	TCGA-L5-A8NM-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.K173fs
ESCA	TCGA-2H-A9GI-01	ARVCF	ENST00000406522.1,ENST00000263207.3,ENST00000344269.3,ENST00000406259.1,ENST00000495096.1,ENST00000401994.1	chr22	19960447:19960559:19960641:19960840:19961165:19961316,	19960642	19960840	19960775	19960775	Frame_Shift_Del	C	-	p.A769fs
ESCA	TCGA-L5-A8NM-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296336	101296336	Frame_Shift_Del	A	-	p.F163fs
ESCA	TCGA-L5-A4OI-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384893	124384893	Frame_Shift_Del	T	-	p.E119fs
ESCA	TCGA-LN-A49O-01	ATF4	ENST00000396680.1,ENST00000404241.2	chr22	39916568:39916756:39917358:39917676:39917777:39917962,	39917359	39917676	39917608	39917609	Frame_Shift_Ins	-	G	p.A54fs
ESCA	TCGA-2H-A9GK-01	ATG13	ENST00000529655.1,ENST00000527907.1,ENST00000524625.1,ENST00000451945.1,ENST00000530500.1	chr11	46679073:46679172:46680941:46681035:46686932:46687069,	46680942	46681035	46681022	46681022	Frame_Shift_Del	C	-	p.P260fs
ESCA	TCGA-LN-A4A9-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194146070:194146258:194147803:194147981:194149573:194149646,	194147804	194147981	194147849	194147850	Frame_Shift_Ins	-	A	p.W1027fs
ESCA	TCGA-L5-A4OI-01	ATP1A1	ENST00000369494.1,ENST00000537345.1,ENST00000295598.5,ENST00000369496.4	chr1	116929924:116930113:116930752:116930866:116931259:116931285,	116930753	116930866	116930848	116930849	Frame_Shift_Ins	-	A	p.N162fs
ESCA	TCGA-XP-A8T8-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.E315fs
ESCA	TCGA-L5-A8NM-01	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3520868:3520982:3526408:3526537:3527930:3528136,	3526409	3526537	3526487	3526487	Frame_Shift_Del	T	-	p.F231fs
ESCA	TCGA-L5-A8NM-01	ATRNL1	ENST00000423111.2,ENST00000355044.3,ENST00000303745.7	chr10	117308967:117309046:117486757:117486865:117607387:117607502,	117486758	117486865	117486834	117486837	Frame_Shift_Del	AACA	-	p.T1293fs
ESCA	TCGA-VR-AA7D-01	AVIL	ENST00000257861.3,ENST00000548843.1,ENST00000537081.1,ENST00000549851.1	chr12	58203594:58203673:58204131:58204334:58204598:58204709,	58204132	58204334	58204330	58204330	Frame_Shift_Del	A	-	p.M188fs
ESCA	TCGA-L5-A8NM-01	AXIN1	ENST00000354866.3,ENST00000481769.1,ENST00000461023.1,ENST00000262320.3	chr16	354303:354441:359972:360069:364542:364683,	359973	360069	360055	360055	Frame_Shift_Del	G	-	p.P345fs
ESCA	TCGA-L5-A4OI-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025103	58025103	Frame_Shift_Del	C	-	p.G88fs
ESCA	TCGA-L5-A4OI-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380921	380921	Frame_Shift_Del	G	-	p.G991fs
ESCA	TCGA-L5-A4OI-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380921	380921	Frame_Shift_Del	G	-	p.G991fs
ESCA	TCGA-L5-A8NS-01	B4GALT1	ENST00000541851.1,ENST00000379731.4	chr9	33113365:33113584:33113771:33113876:33115988:33116111,	33113772	33113876	33113814	33113814	Frame_Shift_Del	A	-	p.I341fs
ESCA	TCGA-VR-A8ER-01	B4GALT7	ENST00000505433.1,ENST00000505145.1,ENST00000029410.5	chr5	177035539:177035623:177035910:177036015:177036540:177036708,	177035911	177036015	177035912	177035912	Frame_Shift_Del	T	-	p.F243fs
ESCA	TCGA-L5-A4OI-01	B9D1	ENST00000575478.1,ENST00000575403.1,ENST00000268841.6,ENST00000395615.1,ENST00000477478.2,ENST00000574508.2,ENST00000440841.1,ENST00000261499.4,ENST00000395616.3,ENST00000477683.1,ENST00000461069.2	chr17	19251096:19251193:19261152:19261264:19263632:19263701,	19261153	19261264	19261171	19261171	Frame_Shift_Del	T	-	p.S76fs
ESCA	TCGA-L5-A8NW-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698924	30698924	Frame_Shift_Del	A	-	p.N261fs
ESCA	TCGA-V5-AASV-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646207	215646208	Frame_Shift_Del	TT	-	p.S131fs
ESCA	TCGA-L5-A4OI-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.E41fs
ESCA	TCGA-L5-A4OI-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.E41fs
ESCA	TCGA-L5-A8NM-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.E41fs
ESCA	TCGA-L5-A8NM-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458971	Frame_Shift_Del	G	-	p.E41fs
ESCA	TCGA-VR-A8EU-01	BBS4	ENST00000569338.1,ENST00000268057.4,ENST00000565160.1,ENST00000561914.1	chr15	72978857:72978905:72987517:72987569:73002040:73002120,72978577:72978592:72987517:72987569:73002040:73002120,	72987518	72987569	72987563	72987563	Frame_Shift_Del	A	-	p.A34fs
ESCA	TCGA-L5-A8NJ-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465981	59465981	Frame_Shift_Del	A	-	p.G891fs
ESCA	TCGA-L5-A8NR-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465981	59465981	Frame_Shift_Del	A	-	p.G891fs
ESCA	TCGA-L5-A8NM-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547794	165547795	Frame_Shift_Ins	-	T	p.T343fs
ESCA	TCGA-VR-A8EQ-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548603	165548604	Frame_Shift_Ins	-	T	p.P74fs
ESCA	TCGA-L5-A8NM-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770651	118770652	Frame_Shift_Ins	-	G	p.P1128fs
ESCA	TCGA-L5-A4OI-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766232	70766233	Frame_Shift_Ins	-	T	p.L312fs
ESCA	TCGA-L5-A4OJ-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766232	70766233	Frame_Shift_Ins	-	T	p.L312fs
ESCA	TCGA-L5-A8NM-01	BECN1	ENST00000543382.2,ENST00000361523.4,ENST00000590099.1	chr17	40970238:40970433:40970561:40970698:40970804:40970895,	40970562	40970698	40970681	40970681	Frame_Shift_Del	A	-	p.F123fs
ESCA	TCGA-LN-A4A8-01	BLM	ENST00000559724.1	chr15	91298040:91298168:91303210:91303509:91303823:91304052,	91303211	91303509	91303325	91303326	Frame_Shift_Ins	-	T	p.F405fs
ESCA	TCGA-V5-AASX-01	BLM	ENST00000559724.1	chr15	91298040:91298168:91303210:91303509:91303823:91304052,	91303211	91303509	91303326	91303326	Frame_Shift_Del	T	-	p.F404fs
ESCA	TCGA-Z6-A9VB-01	BTD	ENST00000303498.5	chr3	15643307:15643401:15676930:15677195:15683414:15683564,	15676931	15677195	15676984	15676984	Frame_Shift_Del	G	-	p.C33fs
ESCA	TCGA-L5-A4OI-01	BTF3L4	ENST00000472944.2	chr1	52522003:52522051:52530496:52530610:52549011:52549172,	52530497	52530610	52530571	52530571	Frame_Shift_Del	A	-	p.K45fs
ESCA	TCGA-L5-A8NJ-01	BTN2A1	ENST00000429381.1,ENST00000312541.5,ENST00000469185.1,ENST00000541522.1	chr6	26459708:26460056:26463471:26463753:26465412:26465634,	26463472	26463753	26463595	26463595	Frame_Shift_Del	T	-	p.A186fs
ESCA	TCGA-L5-A8NT-01	C1orf127	ENST00000520253.1,ENST00000377004.4	chr1	11014075:11014199:11015046:11015243:11017079:11017164,	11015047	11015243	11015170	11015171	Frame_Shift_Ins	-	GAAC	p.Y285fs
ESCA	TCGA-L5-A88T-01	C2CD3	ENST00000313663.7,ENST00000415191.2,ENST00000334126.7	chr11	73825428:73825638:73829272:73829427:73834032:73834180,	73829273	73829427	73829364	73829364	Frame_Shift_Del	T	-	p.I477fs
ESCA	TCGA-L5-A8NM-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42074305	42074306	Frame_Shift_Ins	-	G	p.S448fs
ESCA	TCGA-L5-A4OE-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42074752	42074752	Frame_Shift_Del	G	-	p.R300fs
ESCA	TCGA-L5-A4OI-01	CA10	ENST00000570565.1,ENST00000340813.6,ENST00000451037.2,ENST00000285273.4,ENST00000442502.2,ENST00000575181.1,ENST00000571371.1	chr17	49824992:49825178:50008349:50008492:50149678:50149753,	50008350	50008492	50008356	50008357	Frame_Shift_Ins	-	C	p.R98fs
ESCA	TCGA-L5-A8NM-01	CABIN1	ENST00000398319.2,ENST00000445422.1,ENST00000263119.5,ENST00000454754.1	chr22	24445552:24445682:24447286:24447436:24451335:24451622,	24447287	24447436	24447362	24447362	Frame_Shift_Del	A	-	p.K246fs
ESCA	TCGA-L5-A4OI-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000402834.4	chr12	121708700:121708748:121711858:121712388:121735341:121735860,121708700:121708748:121711858:121712388:121734440:121734489,	121711859	121712388	121712281	121712281	Frame_Shift_Del	G	-	p.Q17fs
ESCA	TCGA-L5-A8NM-01	CAMSAP2	ENST00000358823.2,ENST00000236925.4	chr1	200813909:200813997:200816337:200816420:200816767:200816837,	200816338	200816420	200816338	200816339	Frame_Shift_Ins	-	G	p.E382fs
ESCA	TCGA-R6-A6L4-01	CAPN15	ENST00000219611.2	chr16	586028:586142:596816:598287:598992:599201,	596817	598287	598175	598175	Frame_Shift_Del	G	-	p.A448fs
ESCA	TCGA-IG-A8O2-01	CAPZA2	ENST00000449080.1	chr7	116502667:116502704:116520120:116520201:116528180:116528244,	116520121	116520201	116520179	116520180	Frame_Shift_Ins	-	T	p.L36fs
ESCA	TCGA-L5-A4OI-01	CAPZA2	ENST00000449080.1	chr7	116502667:116502704:116520120:116520201:116528180:116528244,	116520121	116520201	116520180	116520180	Frame_Shift_Del	T	-	p.L36fs
ESCA	TCGA-LN-A4A9-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878040	104878041	Frame_Shift_Ins	-	T	p.T81fs
ESCA	TCGA-VR-A8EQ-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878040	104878041	Frame_Shift_Ins	-	T	p.T81fs
ESCA	TCGA-L5-A4OU-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878041	Frame_Shift_Del	T	-	p.T81fs
ESCA	TCGA-L5-A8NN-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878041	Frame_Shift_Del	T	-	p.T81fs
ESCA	TCGA-LN-A4A8-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878041	Frame_Shift_Del	T	-	p.T81fs
ESCA	TCGA-IG-A97H-01	CCDC120	ENST00000603986.1,ENST00000603906.1,ENST00000422185.2	chrX	48923277:48923376:48924711:48925626:48926079:48926305,	48924712	48925626	48924907	48924908	Frame_Shift_Del	TG	-	p.A420fs
ESCA	TCGA-L5-A4OI-01	CCDC136	ENST00000297788.4	chr7	128454702:128454973:128455667:128455985:128457811:128457918,	128455668	128455985	128455793	128455794	Frame_Shift_Del	GT	-	p.C1058fs
ESCA	TCGA-L5-A4OI-01	CCDC33	ENST00000558659.1,ENST00000398814.3,ENST00000321288.5	chr15	74572303:74572433:74573008:74573142:74574118:74574190,	74573009	74573142	74573101	74573101	Frame_Shift_Del	A	-	p.G532fs
ESCA	TCGA-L5-A8NM-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052616	50052616	Frame_Shift_Del	C	-	p.T485fs
ESCA	TCGA-L5-A891-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548389	19548389	Frame_Shift_Del	A	-	p.N467fs
ESCA	TCGA-L5-A4OI-01	CD46	ENST00000469535.1,ENST00000441839.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1	chr1	207925401:207925654:207930358:207930547:207930884:207930987,	207930359	207930547	207930454	207930454	Frame_Shift_Del	A	-	p.G67fs
ESCA	TCGA-L5-A4OI-01	CD79A	ENST00000221972.3	chr19	42383059:42383359:42383604:42383723:42384736:42384769,	42383605	42383723	42383610	42383610	Frame_Shift_Del	C	-	p.R131fs
ESCA	TCGA-2H-A9GN-01	CD96	ENST00000438817.2,ENST00000352690.4,ENST00000494798.1	chr3	111286427:111286494:111297873:111298081:111304169:111304225,	111297874	111298081	111298030	111298031	Frame_Shift_Del	AG	-	p.R250fs
ESCA	TCGA-L5-A4OI-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.Y126fs
ESCA	TCGA-LN-A9FR-01	CDCA7L	ENST00000406877.3	chr7	21948038:21948125:21956371:21956512:21985398:21985496,21951234:21951372:21956371:21956512:21985398:21985521,	21956372	21956512	21956476	21956477	Frame_Shift_Ins	-	G	p.S20fs
ESCA	TCGA-L5-A8NM-01	CDH18	ENST00000382275.1,ENST00000507958.1,ENST00000274170.4	chr5	19473723:19473825:19483409:19483661:19503100:19503218,	19483410	19483661	19483637	19483638	Frame_Shift_Ins	-	T	p.R552fs
ESCA	TCGA-JY-A93D-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971025	21971026	Frame_Shift_Del	GC	-	p.P167fs
ESCA	TCGA-JY-A93D-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971025	21971026	Frame_Shift_Del	GC	-	p.P167fs
ESCA	TCGA-V5-A7RC-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971154	21971155	Frame_Shift_Del	CG	-	p.G124fs
ESCA	TCGA-V5-A7RC-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971154	21971155	Frame_Shift_Del	CG	-	p.G124fs
ESCA	TCGA-R6-A6XG-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971175	21971175	Frame_Shift_Del	C	-	p.A117fs
ESCA	TCGA-R6-A6XG-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971175	21971175	Frame_Shift_Del	C	-	p.A117fs
ESCA	TCGA-L5-A4OI-01	CELF2	ENST00000537122.1,ENST00000609870.1	chr10	11259387:11259470:11291115:11291164:11299700:11299835,11207490:11207645:11291115:11291164:11299700:11299835,	11291116	11291164	11291153	11291153	Frame_Shift_Del	A	-	p.K132fs
ESCA	TCGA-VR-AA4D-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88486457:88486609:88487546:88487752:88490664:88490776,	88487547	88487752	88487680	88487681	Frame_Shift_Ins	-	T	p.I1061fs
ESCA	TCGA-L5-A4OI-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88486457:88486609:88487546:88487752:88490664:88490776,	88487547	88487752	88487681	88487681	Frame_Shift_Del	T	-	p.I1061fs
ESCA	TCGA-LN-A7HV-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117254666:117254767:117267575:117267824:117282491:117282647,	117267576	117267824	117267663	117267664	Frame_Shift_Ins	-	AA	p.L1187fs
ESCA	TCGA-L5-A4OI-01	CHAF1A	ENST00000301280.5	chr19	4405908:4405959:4408899:4409756:4418016:4418073,	4408900	4409756	4409561	4409564	Frame_Shift_Del	CCTT	-	p.L256fs
ESCA	TCGA-L5-A8NM-01	CHAF1A	ENST00000301280.5	chr19	4418025:4418073:4422562:4422792:4423331:4423392,	4422563	4422792	4422628	4422629	Frame_Shift_Del	AG	-	p.E362fs
ESCA	TCGA-VR-A8EU-01	CHAT	ENST00000466590.2,ENST00000339797.1,ENST00000455728.2,ENST00000351556.3,ENST00000337653.2,ENST00000395559.2,ENST00000395562.2	chr10	50833518:50833699:50835653:50835831:50854550:50854720,	50835654	50835831	50835768	50835769	Frame_Shift_Ins	-	T	p.G351fs
ESCA	TCGA-L5-A43J-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.R540fs
ESCA	TCGA-JY-A93E-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791696:42791879:42791961:42792127:42793039:42793242,	42791962	42792127	42792111	42792112	Frame_Shift_Ins	-	GCTG	p.A306fs
ESCA	TCGA-R6-A6XQ-01	CLINT1	ENST00000530742.1,ENST00000523094.1,ENST00000296951.5,ENST00000411809.2,ENST00000523908.1	chr5	157232873:157233120:157236635:157236813:157240070:157240235,	157236636	157236813	157236744	157236744	Frame_Shift_Del	G	-	p.P178fs
ESCA	TCGA-LN-A4A8-01	CMTM3	ENST00000424011.2,ENST00000566756.1,ENST00000562707.1,ENST00000565003.1,ENST00000562357.1,ENST00000563672.1,ENST00000567572.1,ENST00000361909.4	chr16	66638797:66638855:66642211:66642367:66643785:66643906,66638797:66638855:66642211:66642367:66643337:66643383,	66642212	66642367	66642288	66642289	Frame_Shift_Ins	-	CC	p.L76fs
ESCA	TCGA-L5-A43J-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551296	Frame_Shift_Del	A	-	p.L974fs
ESCA	TCGA-L5-A43J-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551296	Frame_Shift_Del	A	-	p.L974fs
ESCA	TCGA-Z6-A9VB-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551296	Frame_Shift_Del	A	-	p.L974fs
ESCA	TCGA-Z6-A9VB-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551296	Frame_Shift_Del	A	-	p.L974fs
ESCA	TCGA-L5-A4OI-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551297	Frame_Shift_Del	AA	-	p.L974fs
ESCA	TCGA-L5-A4OI-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551297	Frame_Shift_Del	AA	-	p.L974fs
ESCA	TCGA-L5-A8NM-01	COG6	ENST00000455146.3,ENST00000356576.4,ENST00000416691.1	chr13	40251604:40251716:40253674:40253757:40254111:40254182,	40253675	40253757	40253676	40253677	Frame_Shift_Ins	-	T	p.K184fs
ESCA	TCGA-L5-A43J-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.P558fs
ESCA	TCGA-L5-A4OI-01	COL13A1	ENST00000398978.3,ENST00000398971.3,ENST00000479733.1,ENST00000356340.3,ENST00000398974.3,ENST00000398964.3,ENST00000398973.3,ENST00000398972.3	chr10	71655305:71655332:71658452:71658518:71662503:71662611,71657230:71657287:71658452:71658518:71662503:71662611,	71658453	71658518	71658500	71658500	Frame_Shift_Del	A	-	p.R256fs
ESCA	TCGA-LN-A49M-01	COL22A1	ENST00000435777.1,ENST00000303045.6	chr8	139736857:139736911:139737629:139737683:139749766:139749820,	139737630	139737683	139737649	139737649	Frame_Shift_Del	G	-	p.P725fs
ESCA	TCGA-R6-A8WC-01	COL4A5	ENST00000470339.1,ENST00000328300.6,ENST00000361603.2	chrX	107683171:107683436:107782975:107783035:107802293:107802383,	107782976	107783035	107783031	107783031	Frame_Shift_Del	A	-	p.K47fs
ESCA	TCGA-IG-A97H-01	COL4A5	ENST00000483338.1,ENST00000328300.6,ENST00000361603.2	chrX	107840606:107840798:107841931:107842100:107844622:107844715,	107841932	107842100	107842050	107842050	Frame_Shift_Del	A	-	p.G635fs
ESCA	TCGA-L5-A8NM-01	COX20	ENST00000366528.3	chr1	244998960:244999058:245005245:245005360:245005500:245005560,244999786:244999822:245005245:245005360:245005496:245005560,	245005246	245005360	245005347	245005347	Frame_Shift_Del	T	-	p.L50fs
ESCA	TCGA-R6-A8W8-01	CPED1	ENST00000310396.5	chr7	120907268:120907356:120911337:120911484:120935493:120935652,	120911338	120911484	120911387	120911388	Frame_Shift_Ins	-	A	p.H927fs
ESCA	TCGA-L5-A4OI-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542776	24542776	Frame_Shift_Del	T	-	p.F136fs
ESCA	TCGA-VR-A8EO-01	CRB1	ENST00000484075.1	chr1	197407676:197407805:197411295:197411664:197446793:197447009,	197411296	197411664	197411469	197411470	Frame_Shift_Del	TT	-	p.F1352fs
ESCA	TCGA-L5-A8NM-01	CREBBP	ENST00000382070.3	chr16	3860603:3860780:3900297:3901010:3929832:3930121,	3900298	3901010	3900661	3900661	Frame_Shift_Del	G	-	p.A146fs
ESCA	TCGA-JY-A6FG-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268876	115268877	Frame_Shift_Ins	-	AATC	p.F547fs
ESCA	TCGA-L5-A8NQ-01	CSE1L	ENST00000469700.1,ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47708582:47708664:47710676:47710823:47711268:47711500,	47710677	47710823	47710696	47710697	Frame_Shift_Ins	-	A	p.I825fs
ESCA	TCGA-L5-A43J-01	CSF3	ENST00000225474.2	chr17	38171698:38171767:38171943:38172107:38172485:38172593,	38171944	38172107	38171995	38171995	Frame_Shift_Del	C	-	p.L33fs
ESCA	TCGA-L5-A43J-01	CSF3	ENST00000394149.3	chr17	38171698:38171767:38171943:38172098:38172485:38172593,	38171944	38172098	38171995	38171995	Frame_Shift_Del	C	-	p.L33fs
ESCA	TCGA-R6-A8WC-01	CSMD1	ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2823296:2823476:2824091:2824268:2830638:2830821,	2824092	2824268	2824141	2824141	Frame_Shift_Del	C	-	p.H3019fs
ESCA	TCGA-LN-A9FR-01	CSMD1	ENST00000519623.1,ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2857500:2857653:2875998:2876172:2886840:2887035,	2875999	2876172	2876139	2876139	Frame_Shift_Del	T	-	p.N2631fs
ESCA	TCGA-VR-A8EQ-01	CTDSP2	ENST00000547701.1,ENST00000551594.1,ENST00000547169.1,ENST00000398073.2	chr12	58217435:58217510:58217686:58217872:58218009:58218102,	58217687	58217872	58217849	58217849	Frame_Shift_Del	C	-	p.L177fs
ESCA	TCGA-L5-A43J-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068234	88068234	Frame_Shift_Del	T	-	p.V64fs
ESCA	TCGA-L5-A8NJ-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920757	107920758	Frame_Shift_Ins	-	A	p.S127fs
ESCA	TCGA-L5-A8NS-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124534951:124535774:124536538:124536691:124538476:124538670,	124536539	124536691	124536636	124536637	Frame_Shift_Ins	-	C	p.H1025fs
ESCA	TCGA-LN-A49R-01	DAZAP2	ENST00000549555.1,ENST00000604900.1,ENST00000449723.3,ENST00000425012.2	chr12	51632686:51632704:51634126:51634245:51634654:51634713,	51634127	51634245	51634217	51634218	Frame_Shift_Ins	-	T	p.T36fs
ESCA	TCGA-R6-A6XG-01	DBF4	ENST00000431138.1	chr7	87505914:87506093:87507367:87507448:87514293:87514473,	87507368	87507448	87507388	87507389	Frame_Shift_Ins	-	A	p.N25fs
ESCA	TCGA-R6-A6XG-01	DBF4	ENST00000486925.1,ENST00000430279.1,ENST00000265728.1	chr7	87505914:87506093:87507367:87507540:87514293:87514473,	87507368	87507540	87507388	87507389	Frame_Shift_Ins	-	A	p.N25fs
ESCA	TCGA-L5-A8NI-01	DCBLD1	ENST00000296955.8,ENST00000338728.5,ENST00000533453.1,ENST00000368503.4	chr6	117824946:117825142:117840978:117841113:117842687:117842739,	117840979	117841113	117841079	117841079	Frame_Shift_Del	T	-	p.L144fs
ESCA	TCGA-L5-A8NM-01	DCLK2	ENST00000411937.2,ENST00000506325.1,ENST00000302176.8	chr4	151000179:151000600:151023629:151023964:151114289:151114392,	151023630	151023964	151023683	151023683	Frame_Shift_Del	A	-	p.N160fs
ESCA	TCGA-L5-A4OI-01	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367351	105367351	Frame_Shift_Del	A	-	p.R428fs
ESCA	TCGA-L5-A8NM-01	DDX43	ENST00000539829.1	chr6	74109956:74110086:74111581:74111713:74114412:74114494,74109956:74110086:74111581:74111713:74115401:74115558,	74111582	74111713	74111695	74111696	Frame_Shift_Ins	-	A	p.T186fs
ESCA	TCGA-JY-A6FD-01	DHODH	ENST00000572887.1,ENST00000219240.4	chr16	72050922:72051005:72055022:72055210:72056260:72056374,	72055023	72055210	72055078	72055078	Frame_Shift_Del	G	-	p.E192fs
ESCA	TCGA-L5-A8NM-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852454:182852503:182852654:182852770:182853747:182853948,	182852655	182852770	182852698	182852698	Frame_Shift_Del	C	-	p.L1065fs
ESCA	TCGA-2H-A9GG-01A-11D-A37C-09	DMD	ENST00000361471.4,ENST00000359836.1,ENST00000474231.1,ENST00000378723.3,ENST00000358062.2,ENST00000378702.4,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31165391:31165635:31187559:31187718:31190464:31190530,	31187560	31187718	31187701	31187701	Frame_Shift_Del	A	-	p.L3471fs
ESCA	TCGA-XP-A8T6-01	DMTF1	ENST00000449088.3,ENST00000447863.1,ENST00000394702.3,ENST00000394703.5,ENST00000413276.2,ENST00000430405.3,ENST00000412139.2,ENST00000425705.2,ENST00000579677.1,ENST00000453049.1,ENST00000331242.7,ENST00000414194.2,ENST00000446796.2,ENST00000584619.1,ENST00000547146.2,ENST00000434534.1	chr7	86794249:86794366:86795798:86795921:86800310:86800333,	86795799	86795921	86795900	86795901	Frame_Shift_Ins	-	T	p.S72fs
ESCA	TCGA-L5-A43J-01	DMTN	ENST00000358242.3,ENST00000523300.1,ENST00000517305.1,ENST00000523623.1,ENST00000265800.5,ENST00000443491.2,ENST00000520174.1,ENST00000415253.1,ENST00000517804.1,ENST00000517418.1,ENST00000519850.1,ENST00000432128.1,ENST00000519907.1,ENST00000523782.2,ENST00000523266.1,ENST00000381470.3	chr8	21925037:21925193:21926526:21926571:21926929:21926967,	21926527	21926571	21926552	21926552	Frame_Shift_Del	C	-	p.P94fs
ESCA	TCGA-VR-A8EX-01	DNAH14	ENST00000430092.1,ENST00000400952.3,ENST00000366849.1,ENST00000486657.1,ENST00000439375.2,ENST00000366850.3,ENST00000366848.1	chr1	225142740:225142800:225147854:225148004:225152180:225152311,	225147855	225148004	225147937	225147937	Frame_Shift_Del	A	-	p.K102fs
ESCA	TCGA-R6-A6XQ-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225266908:225267250:225268080:225268450:225270250:225270441,	225268081	225268450	225268353	225268353	Frame_Shift_Del	T	-	p.W1014fs
ESCA	TCGA-IC-A6RE-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225567860:225568024:225569084:225569281:225576080:225576193,	225569085	225569281	225569205	225569206	Frame_Shift_Del	GA	-	p.E4233fs
ESCA	TCGA-L5-A8NM-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84744946:84745175:84752688:84752862:84756027:84756290,	84752689	84752862	84752796	84752796	Frame_Shift_Del	A	-	p.S114fs
ESCA	TCGA-VR-A8EQ-01	DNAJA1	ENST00000544625.1	chr9	33026810:33026988:33029882:33029987:33030437:33030665,33026472:33026614:33029882:33029987:33030437:33030665,	33029883	33029987	33029944	33029944	Frame_Shift_Del	A	-	p.K125fs
ESCA	TCGA-L5-A4OI-01	DNAJC21	ENST00000382021.2	chr5	34945865:34945908:34949647:34949782:34950274:34950447,	34949648	34949782	34949704	34949704	Frame_Shift_Del	A	-	p.K416fs
ESCA	TCGA-L5-A4OI-01	DOCK9	ENST00000449796.1,ENST00000448493.2,ENST00000339416.2,ENST00000472874.1,ENST00000376460.1	chr13	99500845:99500893:99502300:99502367:99505661:99505776,	99502301	99502367	99502312	99502312	Frame_Shift_Del	A	-	p.F1335fs
ESCA	TCGA-L5-A8NM-01	DSN1	ENST00000373750.4,ENST00000447406.1,ENST00000426836.1,ENST00000373745.3	chr20	35396371:35396445:35399275:35399596:35402064:35402123,35396371:35396445:35399275:35399596:35399827:35399876,	35399276	35399596	35399448	35399448	Frame_Shift_Del	T	-	p.G63fs
ESCA	TCGA-L5-A8NM-01	DSN1	ENST00000480153.1	chr20	35396371:35396445:35399275:35399876:35402064:35402123,	35399276	35399876	35399448	35399448	Frame_Shift_Del	T	-	p.G63fs
ESCA	TCGA-VR-AA7B-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580047	7580048	Frame_Shift_Ins	-	AAGT	p.Y1209fs
ESCA	TCGA-R6-A6DN-01	DUOX2	ENST00000603300.1,ENST00000389039.6	chr15	45384852:45386470:45386760:45386889:45387133:45387289,	45386761	45386889	45386802	45386803	Frame_Shift_Ins	-	G	p.F1494fs
ESCA	TCGA-L5-A8NM-01	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46645113:46645296:46690054:46690157:46783379:46783474,	46690055	46690157	46690133	46690133	Frame_Shift_Del	T	-	p.K495fs
ESCA	TCGA-L5-A8NM-01	DYNC1I2	ENST00000409773.1,ENST00000445378.1,ENST00000409453.1,ENST00000456808.1,ENST00000358002.6,ENST00000409317.1,ENST00000411953.1,ENST00000409197.1	chr2	172544010:172544137:172546656:172546773:172549286:172549404,172544301:172544383:172546656:172546773:172549286:172549404,	172546657	172546773	172546762	172546762	Frame_Shift_Del	A	-	p.E36fs
ESCA	TCGA-LN-A4A6-01	DYNC1I2	ENST00000412370.1,ENST00000410079.3,ENST00000438879.1,ENST00000456808.1,ENST00000358002.6,ENST00000411953.1,ENST00000423910.1	chr2	172546656:172546773:172549286:172549404:172571837:172571860,172546656:172546773:172549286:172549404:172563796:172563887,172546656:172546773:172549286:172549404:172563742:172563887,	172549287	172549404	172549338	172549339	Frame_Shift_Ins	-	A	p.R57fs
ESCA	TCGA-L5-A4OR-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103182606:103182762:103187273:103187349:103191757:103191966,	103187274	103187349	103187341	103187341	Frame_Shift_Del	T	-	p.F3914fs
ESCA	TCGA-L5-A8NM-01	DYRK1B	ENST00000430012.2	chr19	40316819:40316926:40317311:40317507:40317924:40318065,	40317312	40317507	40317456	40317456	Frame_Shift_Del	G	-	p.L423fs
ESCA	TCGA-L5-A8NM-01	DYRK1B	ENST00000593685.1,ENST00000323039.5	chr19	40316819:40316926:40317311:40317627:40317924:40318065,	40317312	40317627	40317456	40317456	Frame_Shift_Del	G	-	p.L423fs
ESCA	TCGA-KH-A6WC-01	ECHDC1	ENST00000417628.2	chr6	127636010:127636041:127637078:127637226:127637594:127637604,	127637079	127637226	127637118	127637118	Frame_Shift_Del	A	-	p.*140fs
ESCA	TCGA-KH-A6WC-01	ECHDC1	ENST00000368292.6,ENST00000436638.1	chr6	127636010:127636041:127637078:127637119:127648146:127648157,127636010:127636041:127637078:127637119:127637594:127637604,	127637079	127637119	127637118	127637118	Frame_Shift_Del	A	-	p.*140fs
ESCA	TCGA-VR-A8Q7-01	EIF4A1	ENST00000578495.1	chr17	7478505:7478576:7479847:7480010:7480373:7480428,	7479848	7480010	7479902	7479902	Frame_Shift_Del	G	-	p.G137fs
ESCA	TCGA-VR-A8Q7-01	EIF4A1	ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000582746.1,ENST00000577731.1,ENST00000581384.1,ENST00000580888.1,ENST00000577269.1,ENST00000585024.1,ENST00000583802.1	chr17	7477865:7477996:7479841:7480010:7480373:7480428,7478505:7478576:7479841:7480010:7480373:7480428,	7479842	7480010	7479902	7479902	Frame_Shift_Del	G	-	p.G137fs
ESCA	TCGA-L5-A8NS-01	EIF4G3	ENST00000411888.1	chr1	21306826:21306941:21307540:21307720:21324093:21324126,21306826:21306941:21307540:21307720:21329205:21329280,21306826:21306941:21307540:21307720:21327691:21327805,	21307541	21307720	21307562	21307562	Frame_Shift_Del	C	-	p.P71fs
ESCA	TCGA-L5-A4OI-01	ELOVL2	ENST00000354666.3	chr6	10990550:10990675:10995239:10995411:11000319:11000397,	10995240	10995411	10995330	10995330	Frame_Shift_Del	T	-	p.T139fs
ESCA	TCGA-IC-A6RF-01	EMC10	ENST00000601780.1,ENST00000376918.3	chr19	50984140:50984234:50985117:50985204:50985405:50985419,	50985118	50985204	50985132	50985132	Frame_Shift_Del	G	-	p.A234fs
ESCA	TCGA-L5-A8NM-01	EMC10	ENST00000601780.1,ENST00000376918.3	chr19	50984140:50984234:50985117:50985204:50985405:50985419,	50985118	50985204	50985132	50985132	Frame_Shift_Del	G	-	p.A234fs
ESCA	TCGA-L5-A8NU-01	EMILIN1	ENST00000433140.1,ENST00000380320.4	chr2	27307858:27307876:27308027:27308165:27308545:27309271,	27308028	27308165	27308035	27308035	Frame_Shift_Del	G	-	p.A863fs
ESCA	TCGA-LN-A4A4-01	EML3	ENST00000531557.1,ENST00000494176.2,ENST00000278845.4,ENST00000529309.1,ENST00000394773.2,ENST00000483199.1,ENST00000494448.1,ENST00000460939.1,ENST00000394776.4	chr11	62371584:62371673:62372584:62372652:62373113:62373154,	62372585	62372652	62372637	62372638	Frame_Shift_Del	CA	-	p.A644fs
ESCA	TCGA-L5-A43J-01	EML4	ENST00000401738.3	chr2	42491845:42491871:42492058:42492091:42507989:42508113,	42492059	42492091	42492077	42492077	Frame_Shift_Del	A	-	p.N231fs
ESCA	TCGA-IG-A8O2-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607509	46607510	Frame_Shift_Ins	-	A	p.M566fs
ESCA	TCGA-L5-A8NM-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462258	16462258	Frame_Shift_Del	G	-	p.K441fs
ESCA	TCGA-L5-A8NM-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.Q134fs
ESCA	TCGA-L5-A4OI-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56201232:56201316:56203119:56203423:56204051:56204162,	56203120	56203423	56203184	56203184	Frame_Shift_Del	G	-	p.G364fs
ESCA	TCGA-L5-A4OI-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.N512fs
ESCA	TCGA-L5-A4OI-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.N512fs
ESCA	TCGA-L5-A8NM-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.N512fs
ESCA	TCGA-L5-A8NM-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.N512fs
ESCA	TCGA-LN-A49R-01	ESRP2	ENST00000473183.2	chr16	68266479:68266590:68266663:68266718:68267229:68267328,	68266664	68266718	68266687	68266688	Frame_Shift_Ins	-	T	p.Q230fs
ESCA	TCGA-LN-A49N-01	ETFDH	ENST00000307738.5,ENST00000511912.1	chr4	159620138:159620282:159624574:159624743:159627340:159627523,	159624575	159624743	159624578	159624579	Frame_Shift_Ins	-	T	p.P375fs
ESCA	TCGA-R6-A6XG-01	EVI5	ENST00000492613.1,ENST00000370331.1,ENST00000540033.1	chr1	93091350:93091491:93101758:93101893:93128976:93129009,93091350:93091491:93101758:93101893:93131495:93131512,	93101759	93101893	93101861	93101861	Frame_Shift_Del	A	-	p.F470fs
ESCA	TCGA-L5-A43J-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000490315.1,ENST00000331029.7,ENST00000360091.3,ENST00000332035.6,ENST00000483629.1,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29692228:29692358:29693816:29693939:29694722:29694791,	29693817	29693939	29693886	29693886	Frame_Shift_Del	G	-	p.G461fs
ESCA	TCGA-2H-A9GI-01	FAH	ENST00000539156.1,ENST00000558627.1,ENST00000261755.5,ENST00000407106.1,ENST00000561421.1	chr15	80460605:80460658:80464490:80464590:80465355:80465486,	80464491	80464590	80464492	80464493	Frame_Shift_Ins	-	T	p.V206fs
ESCA	TCGA-L5-A4OF-01	FAH	ENST00000539156.1,ENST00000261755.5,ENST00000407106.1,ENST00000559217.1,ENST00000561421.1	chr15	80472465:80472567:80473383:80473501:80478471:80478682,	80473384	80473501	80473446	80473446	Frame_Shift_Del	G	-	p.N377fs
ESCA	TCGA-IG-A4QS-01	FAM102B	ENST00000370035.3,ENST00000405454.1	chr1	109143187:109143308:109148844:109148874:109154799:109154916,	109148845	109148874	109148850	109148850	Frame_Shift_Del	A	-	p.G90fs
ESCA	TCGA-L5-A4OI-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.T118fs
ESCA	TCGA-LN-A4A8-01	FAM189A1	ENST00000261275.4	chr15	29443936:29444044:29488633:29488768:29544571:29544682,	29488634	29488768	29488677	29488677	Frame_Shift_Del	T	-	p.N160fs
ESCA	TCGA-L5-A8NM-01	FAM20C	ENST00000313766.5	chr7	195624:195732:208897:208976:286380:286473,	208898	208976	208908	208908	Frame_Shift_Del	G	-	p.G267fs
ESCA	TCGA-L5-A8NS-01	FAM228A	ENST00000456591.1	chr2	24400670:24400739:24401979:24402166:24406153:24406241,	24401980	24402166	24402031	24402031	Frame_Shift_Del	G	-	p.E72fs
ESCA	TCGA-L5-A8NS-01	FAM228A	ENST00000432434.1	chr2	24400670:24400739:24401979:24402096:24406153:24406241,	24401980	24402096	24402031	24402031	Frame_Shift_Del	G	-	p.E72fs
ESCA	TCGA-IC-A6RE-01	FAM71F2	ENST00000474069.1,ENST00000434001.2,ENST00000378704.3,ENST00000480462.1	chr7	128317617:128317867:128320084:128320203:128323017:128323188,	128320085	128320203	128320107	128320107	Frame_Shift_Del	C	-	p.Q215fs
ESCA	TCGA-L5-A8NM-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417669	40417670	Frame_Shift_Ins	-	C	p.V387fs
ESCA	TCGA-2H-A9GQ-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10108892:10109001:10114554:10114665:10114936:10115046,	10114555	10114665	10114581	10114581	Frame_Shift_Del	G	-	p.G841fs
ESCA	TCGA-L5-A4OF-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450109	29450110	Frame_Shift_Ins	-	A	p.I177fs
ESCA	TCGA-L5-A43J-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922881	150922882	Frame_Shift_Del	GA	-	p.P2603fs
ESCA	TCGA-L5-A8NM-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612491	13612491	Frame_Shift_Del	G	-	p.G214fs
ESCA	TCGA-L5-A4OI-01	FBRS	ENST00000356166.6	chr16	30673879:30674180:30675535:30675837:30676035:30676241,	30675536	30675837	30675549	30675549	Frame_Shift_Del	C	-	p.K359fs
ESCA	TCGA-IC-A6RE-01	FBXL17	ENST00000542267.1,ENST00000518486.1	chr5	107700523:107700696:107703531:107703654:107716399:107716664,	107703532	107703654	107703648	107703648	Frame_Shift_Del	A	-	p.S334fs
ESCA	TCGA-LN-A49N-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000470899.1,ENST00000402508.1,ENST00000434523.2	chr2	48037454:48037565:48040372:48040516:48040929:48041006,	48040373	48040516	48040404	48040405	Frame_Shift_Ins	-	TC	p.D732fs
ESCA	TCGA-L5-A4OI-01	FBXO25	ENST00000518240.1,ENST00000350302.3,ENST00000276326.5	chr8	381340:381444:382885:382935:385614:385700,	382886	382935	382898	382898	Frame_Shift_Del	A	-	p.K85fs
ESCA	TCGA-L5-A8NM-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125029867:125029958:125033789:125033909:125035683:125035836,	125033790	125033909	125033884	125033884	Frame_Shift_Del	A	-	p.I705fs
ESCA	TCGA-L5-A4OI-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554288.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53347961:53348187:53360010:53360145:53385840:53386057,	53360011	53360145	53360081	53360082	Frame_Shift_Ins	-	T	p.K153fs
ESCA	TCGA-L5-A8NE-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
ESCA	TCGA-L5-A8NE-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
ESCA	TCGA-LN-A9FR-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
ESCA	TCGA-LN-A9FR-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
ESCA	TCGA-VR-A8EY-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
ESCA	TCGA-VR-A8EY-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
ESCA	TCGA-LN-A9FP-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
ESCA	TCGA-LN-A9FP-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.E486fs
ESCA	TCGA-L5-A8NM-01	FLNA	ENST00000415241.1	chrX	153581139:153581292:153581368:153581589:153581663:153581824,	153581369	153581589	153581543	153581543	Frame_Shift_Del	C	-	p.E2018fs
ESCA	TCGA-L5-A8NM-01	FLNA	ENST00000490936.1,ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000369856.3,ENST00000422373.1,ENST00000420627.1	chrX	153581139:153581292:153581368:153581572:153581663:153581824,	153581369	153581572	153581543	153581543	Frame_Shift_Del	C	-	p.E2018fs
ESCA	TCGA-VR-A8EU-01	FRMD5	ENST00000402883.1	chr15	44162964:44165420:44166316:44166660:44175900:44176007,	44166317	44166660	44166455	44166455	Frame_Shift_Del	C	-	p.Q448fs
ESCA	TCGA-XP-A8T7-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186665038	186665039	Frame_Shift_Ins	-	A	p.N3760fs
ESCA	TCGA-L5-A43J-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671157	186671157	Frame_Shift_Del	C	-	p.P5799fs
ESCA	TCGA-L5-A43J-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074772	31074772	Frame_Shift_Del	A	-	p.T361fs
ESCA	TCGA-R6-A6Y0-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074771	31074772	Frame_Shift_Ins	-	A	p.T360fs
ESCA	TCGA-L5-A43I-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.A575fs
ESCA	TCGA-L5-A8NM-01	GAPDH	ENST00000396861.1,ENST00000492719.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646085:6646176:6646266:6646382:6646474:6646556,	6646267	6646382	6646278	6646278	Frame_Shift_Del	G	-	p.G115fs
ESCA	TCGA-2H-A9GF-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34878346:34878411:34882089:34882227:34883558:34883611,	34882090	34882227	34882121	34882122	Frame_Shift_Ins	-	T	p.A808fs
ESCA	TCGA-L5-A4OI-01	GATA3	ENST00000379328.3	chr10	8100361:8100804:8105955:8106101:8111435:8111559,	8105956	8106101	8105978	8105979	Frame_Shift_Ins	-	G	p.A268fs
ESCA	TCGA-L5-A4OI-01	GATA3	ENST00000346208.3	chr10	8100361:8100804:8105958:8106101:8111435:8111559,	8105959	8106101	8105978	8105979	Frame_Shift_Ins	-	G	p.A268fs
ESCA	TCGA-L5-A4OI-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086477	109086477	Frame_Shift_Del	A	-	p.N233fs
ESCA	TCGA-LN-A7HX-01	GIPC1	ENST00000345425.2	chr19	14591404:14591590:14593500:14593818:14602467:14602555,14591404:14591590:14593500:14593818:14606848:14606864,	14593501	14593818	14593663	14593664	Frame_Shift_Ins	-	C	p.Q44fs
ESCA	TCGA-KH-A6WC-01	GK5	ENST00000487672.1	chr3	141917698:141917775:141923058:141923630:141932367:141932443,	141923059	141923630	141923492	141923492	Frame_Shift_Del	A	-	p.L153fs
ESCA	TCGA-L5-A8NM-01	GK5	ENST00000487672.1	chr3	141917698:141917775:141923058:141923630:141932367:141932443,	141923059	141923630	141923492	141923492	Frame_Shift_Del	A	-	p.L153fs
ESCA	TCGA-L5-A8NM-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862229	4862229	Frame_Shift_Del	C	-	p.R381fs
ESCA	TCGA-L5-A8NM-01	GNL3	ENST00000474423.1	chr3	52720064:52720121:52720784:52720843:52721261:52721399,52720192:52720441:52720784:52720843:52721261:52721399,	52720785	52720843	52720836	52720836	Frame_Shift_Del	A	-	p.K24fs
ESCA	TCGA-R6-A6L6-01	GRB7	ENST00000394204.1,ENST00000309185.3	chr17	37901983:37902041:37902361:37902455:37903003:37903241,	37902362	37902455	37902406	37902407	Frame_Shift_Ins	-	C	p.L492fs
ESCA	TCGA-L5-A8NH-01	GRIK3	ENST00000373091.3	chr1	37261127:37267646:37270587:37270838:37271704:37271927,	37270588	37270838	37270590	37270591	Frame_Shift_Ins	-	CT	p.Q854fs
ESCA	TCGA-R6-A8W8-01	GRIK5	ENST00000594528.1	chr19	42566909:42567007:42567452:42567677:42569374:42569539,	42567453	42567677	42567653	42567653	Frame_Shift_Del	A	-	p.F90fs
ESCA	TCGA-L5-A8NQ-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682289	85682290	Frame_Shift_Ins	-	C	p.V123fs
ESCA	TCGA-R6-A6XQ-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345574	23345577	Frame_Shift_Del	GAGA	-	p.R187fs
ESCA	TCGA-L5-A4OI-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.V151fs
ESCA	TCGA-L5-A4OI-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.V151fs
ESCA	TCGA-L5-A4OI-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.V151fs
ESCA	TCGA-L5-A4OI-01	HDAC11	ENST00000433119.1	chr3	13524963:13525064:13538235:13538352:13540012:13540055,13524966:13525064:13538235:13538352:13542212:13542289,	13538236	13538352	13538267	13538268	Frame_Shift_Ins	-	C	p.V98fs
ESCA	TCGA-XP-A8T8-01	HEMK1	ENST00000455834.1,ENST00000434410.1,ENST00000448997.1,ENST00000232854.4	chr3	50615256:50615306:50616251:50616357:50617274:50617370,	50616252	50616357	50616342	50616342	Frame_Shift_Del	C	-	p.P253fs
ESCA	TCGA-L5-A4OI-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393488	65393489	Frame_Shift_Ins	-	G	p.S214fs
ESCA	TCGA-L5-A4OE-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65418719:65418870:65420381:65420594:65423205:65423419,	65420382	65420594	65420509	65420510	Frame_Shift_Del	TG	-	p.V719fs
ESCA	TCGA-L5-A4OI-01	HGFAC	ENST00000511533.1	chr4	3443701:3443845:3444458:3444639:3444776:3444873,	3444459	3444639	3444594	3444594	Frame_Shift_Del	C	-	p.P86fs
ESCA	TCGA-L5-A88W-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910684	29910685	Frame_Shift_Ins	-	GATA	p.E77fs
ESCA	TCGA-L5-A4OJ-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186092082:186092352:186094735:186094926:186097209:186097423,	186094736	186094926	186094842	186094843	Frame_Shift_Ins	-	A	p.D4204fs
ESCA	TCGA-LN-A7HY-01	HMGN2	ENST00000464888.1,ENST00000361427.5,ENST00000466194.1,ENST00000463817.1	chr1	26800193:26800223:26800575:26800626:26801062:26801158,	26800576	26800626	26800609	26800609	Frame_Shift_Del	A	-	p.K43fs
ESCA	TCGA-L5-A43J-01	HNF4G	ENST00000396419.1	chr8	76456049:76456214:76459821:76459916:76463622:76463729,76402323:76402443:76459821:76459916:76463622:76463729,	76459822	76459916	76459907	76459907	Frame_Shift_Del	A	-	p.E117fs
ESCA	TCGA-L5-A4OI-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41807440:41807609:41808569:41808854:41809876:41809961,	41808570	41808854	41808818	41808818	Frame_Shift_Del	G	-	p.G647fs
ESCA	TCGA-JY-A6FG-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44217411:44217571:44217757:44217891:44218027:44218336,	44217758	44217891	44217808	44217811	Frame_Shift_Del	CAGA	-	p.T190fs
ESCA	TCGA-JY-A6F8-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3149731:3149934:3156019:3156146:3158798:3158926,	3156020	3156146	3156053	3156054	Frame_Shift_Ins	-	T	p.S1179fs
ESCA	TCGA-L5-A891-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53574633:53575234:53575919:53576466:53577626:53577729,	53575920	53576466	53576031	53576031	Frame_Shift_Del	C	-	p.R3309fs
ESCA	TCGA-L5-A43J-01	IARS	ENST00000375627.1,ENST00000375629.3	chr9	94991282:94991408:95002924:95002973:95003137:95003243,	95002925	95002973	95002935	95002935	Frame_Shift_Del	A	-	p.W161fs
ESCA	TCGA-L5-A4OH-01	IFIH1	ENST00000263642.2	chr2	163133924:163134203:163134714:163134838:163136505:163136622,	163134715	163134838	163134715	163134716	Frame_Shift_Ins	-	T	p.A588fs
ESCA	TCGA-L5-A8NW-01	IFRD2	ENST00000429673.2,ENST00000468737.1,ENST00000336089.4,ENST00000436390.1,ENST00000474556.1,ENST00000417626.2,ENST00000484043.1	chr3	50327611:50327725:50327818:50327903:50327990:50328110,	50327819	50327903	50327897	50327898	Frame_Shift_Ins	-	C	p.D228fs
ESCA	TCGA-L5-A4OI-01	IGF1R	ENST00000558762.1,ENST00000559925.1,ENST00000268035.6,ENST00000558898.1	chr15	99439985:99440134:99442705:99442850:99451913:99452128,	99442706	99442850	99442809	99442809	Frame_Shift_Del	A	-	p.N404fs
ESCA	TCGA-LN-A49K-01	IL12RB2	ENST00000465396.1,ENST00000262345.1,ENST00000544434.1	chr1	67852261:67852352:67855711:67855811:67861229:67861446,	67855712	67855811	67855810	67855810	Frame_Shift_Del	A	-	p.E682fs
ESCA	TCGA-L5-A4OI-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.L71fs
ESCA	TCGA-V5-AASV-01	IMPA2	ENST00000590107.1	chr18	12009929:12009986:12012168:12012348:12014263:12014372,	12012169	12012348	12012291	12012292	Frame_Shift_Del	TG	-	p.C154fs
ESCA	TCGA-LN-A49W-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105173657	105173657	Frame_Shift_Del	C	-	p.L353fs
ESCA	TCGA-L5-A4OI-01	INTS10	ENST00000397977.3,ENST00000523143.1,ENST00000523846.1	chr8	19682348:19682483:19683936:19684070:19687916:19688037,	19683937	19684070	19684060	19684060	Frame_Shift_Del	A	-	p.T379fs
ESCA	TCGA-IG-A3YB-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000522171.1,ENST00000343161.4,ENST00000447247.1,ENST00000519053.1,ENST00000521860.1,ENST00000523321.1,ENST00000524333.1,ENST00000519457.1	chr8	95839949:95840021:95841202:95841254:95844219:95844229,	95841203	95841254	95841223	95841223	Frame_Shift_Del	A	-	p.E182fs
ESCA	TCGA-2H-A9GI-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
ESCA	TCGA-L5-A88Z-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
ESCA	TCGA-L5-A8NN-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
ESCA	TCGA-L5-A4OO-01	ITGA4	ENST00000397033.2,ENST00000465522.1,ENST00000233573.6	chr2	182339686:182339793:182339885:182340015:182343483:182343551,	182339886	182340015	182339903	182339904	Frame_Shift_Ins	-	A	p.N149fs
ESCA	TCGA-L5-A43J-01	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335732	173335733	Frame_Shift_Ins	-	T	p.D228fs
ESCA	TCGA-IG-A97I-01	ITGAE	ENST00000263087.4	chr17	3664696:3664814:3665208:3665276:3667162:3667254,	3665209	3665276	3665243	3665243	Frame_Shift_Del	C	-	p.G94fs
ESCA	TCGA-L5-A4OH-01	ITGB1BP1	ENST00000483795.1	chr2	9548280:9548334:9552196:9552534:9554306:9554385,	9552197	9552534	9552384	9552384	Frame_Shift_Del	T	-	p.N101fs
ESCA	TCGA-LN-A4A6-01	ITGB1BP1	ENST00000483795.1	chr2	9548280:9548334:9552196:9552534:9554306:9554385,	9552197	9552534	9552384	9552384	Frame_Shift_Del	T	-	p.N101fs
ESCA	TCGA-L5-A88W-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7776887:7777054:7780583:7780721:7785108:7785222,	7780584	7780721	7780587	7780587	Frame_Shift_Del	C	-	p.L655fs
ESCA	TCGA-L5-A8NM-01	ITIH4	ENST00000434759.3,ENST00000537897.1,ENST00000491663.1	chr3	52853408:52853534:52853769:52854006:52854306:52854333,	52853770	52854006	52853933	52853933	Frame_Shift_Del	C	-	p.R558fs
ESCA	TCGA-L5-A8NU-01	JPH3	ENST00000537256.1,ENST00000284262.2,ENST00000563609.1	chr16	87717747:87717872:87723251:87724132:87730185:87730408,	87723252	87724132	87723837	87723838	Frame_Shift_Ins	-	C	p.P625fs
ESCA	TCGA-2H-A9GG-01A-11D-A37C-09	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76729417:76729533:76729777:76729859:76732264:76732397,	76729778	76729859	76729794	76729794	Frame_Shift_Del	G	-	p.C288fs
ESCA	TCGA-L5-A4OI-01	KCNC3	ENST00000474951.1,ENST00000391818.2,ENST00000376959.2	chr19	50815198:50818247:50819289:50819348:50823849:50824041,	50819290	50819348	50819305	50819305	Frame_Shift_Del	G	-	p.P75fs
ESCA	TCGA-JY-A6FD-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727938	137727939	Frame_Shift_Ins	-	C	p.L875fs
ESCA	TCGA-R6-A6DQ-01	KIAA0753	ENST00000361413.3	chr17	6531938:6532061:6538330:6538491:6543956:6543972,	6538331	6538491	6538418	6538418	Frame_Shift_Del	T	-	p.P3fs
ESCA	TCGA-L5-A4OI-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603524	138603524	Frame_Shift_Del	A	-	p.L283fs
ESCA	TCGA-L5-A4OI-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968044	5968044	Frame_Shift_Del	T	-	p.A730fs
ESCA	TCGA-L5-A88T-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968044	5968044	Frame_Shift_Del	T	-	p.A730fs
ESCA	TCGA-S8-A6BW-01	KLHDC4	ENST00000567298.1,ENST00000347925.5,ENST00000270583.5,ENST00000561825.1	chr16	87788803:87788898:87790004:87790083:87795554:87795622,	87790005	87790083	87790005	87790005	Frame_Shift_Del	T	-	p.T91fs
ESCA	TCGA-S8-A6BW-01	KLHDC4	ENST00000566661.1	chr16	87782404:87782415:87788799:87790083:87795554:87795622,	87788800	87790083	87790005	87790005	Frame_Shift_Del	T	-	p.T91fs
ESCA	TCGA-LN-A4A8-01	KLHL29	ENST00000486442.1,ENST00000471654.1	chr2	23919202:23919383:23926055:23926249:23926588:23926733,	23926056	23926249	23926091	23926091	Frame_Shift_Del	C	-	p.P715fs
ESCA	TCGA-LN-A5U5-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420377	49420378	Frame_Shift_Ins	-	A	p.M5124fs
ESCA	TCGA-L5-A8NG-01	KMT2E	ENST00000334914.7,ENST00000257745.4,ENST00000334884.5,ENST00000311117.3	chr7	104750743:104750815:104750923:104751049:104751217:104751314,	104750924	104751049	104750965	104750965	Frame_Shift_Del	C	-	p.Q1296fs
ESCA	TCGA-L5-A4OI-01	LAMC3	ENST00000361069.4	chr9	133932315:133932534:133936421:133936610:133942346:133942592,	133936422	133936610	133936593	133936594	Frame_Shift_Ins	-	C	p.G781fs
ESCA	TCGA-L5-A4OI-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173390	Frame_Shift_Del	C	-	p.T226fs
ESCA	TCGA-L5-A4OI-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173390	Frame_Shift_Del	C	-	p.T226fs
ESCA	TCGA-Z6-A9VB-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570753	113570754	Frame_Shift_Ins	-	A	p.T405fs
ESCA	TCGA-IG-A4QS-01	LCN15	ENST00000316144.5,ENST00000482511.1	chr9	139656238:139656305:139656639:139656741:139657808:139657919,	139656640	139656741	139656718	139656718	Frame_Shift_Del	G	-	p.Q148fs
ESCA	TCGA-L5-A4OI-01	LCN2	ENST00000372998.1,ENST00000470902.1,ENST00000488391.1,ENST00000540948.1,ENST00000373013.2,ENST00000494317.1,ENST00000373017.1,ENST00000277480.2	chr9	130913947:130913996:130914184:130914304:130914461:130914563,	130914185	130914304	130914272	130914272	Frame_Shift_Del	A	-	p.N151fs
ESCA	TCGA-IG-A625-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25880412:25880555:25881350:25881463:25883643:25883758,	25881351	25881463	25881428	25881428	Frame_Shift_Del	C	-	p.T104fs
ESCA	TCGA-L5-A4OI-01	LEPROTL1	ENST00000321250.8,ENST00000518192.1	chr8	29959455:29959489:29961815:29962002:29994787:29995213,29959455:29959489:29961815:29962002:29963261:29963544,	29961816	29962002	29961841	29961841	Frame_Shift_Del	T	-	p.Y42fs
ESCA	TCGA-L5-A8NM-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315249	96315249	Frame_Shift_Del	A	-	p.N145fs
ESCA	TCGA-R6-A8WC-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3,ENST00000311191.6	chr13	47273470:47273538:47275255:47275342:47279202:47279292,	47275256	47275342	47275284	47275285	Frame_Shift_Ins	-	AT	p.A450fs
ESCA	TCGA-L5-A43J-01	LRP1	ENST00000243077.3,ENST00000556356.1	chr12	57603474:57603651:57603811:57603952:57604089:57604263,	57603812	57603952	57603939	57603940	Frame_Shift_Ins	-	C	p.D4192fs
ESCA	TCGA-IG-A625-01	LRP8	ENST00000347547.2,ENST00000480045.1,ENST00000306052.6	chr1	53712689:53712728:53715051:53715228:53716361:53716534,	53715052	53715228	53715213	53715214	Frame_Shift_Ins	-	AA	p.D897fs
ESCA	TCGA-L5-A8NM-01	LRPPRC	ENST00000260665.7	chr2	44139570:44139697:44145163:44145272:44145394:44145537,	44145164	44145272	44145165	44145165	Frame_Shift_Del	T	-	p.A1051fs
ESCA	TCGA-L5-A4OF-01	LYPD1	ENST00000345008.6	chr2	133403547:133403853:133425972:133426110:133428751:133429152,	133425973	133426110	133426048	133426048	Frame_Shift_Del	A	-	p.S39fs
ESCA	TCGA-L5-A8NF-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235894331:235894477:235896802:235896991:235897129:235897206,	235896803	235896991	235896893	235896893	Frame_Shift_Del	T	-	p.K2904fs
ESCA	TCGA-LN-A4A8-01	LZTS1	ENST00000381569.1,ENST00000522290.1,ENST00000265801.6	chr8	20107622:20107874:20110292:20111096:20112347:20112692,	20110293	20111096	20110621	20110621	Frame_Shift_Del	T	-	p.E274fs
ESCA	TCGA-L5-A43J-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561667	210561667	Frame_Shift_Del	A	-	p.T1474fs
ESCA	TCGA-L5-A43J-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000490904.2	chr6	161412875:161413115:161455290:161455481:161469647:161469835,	161455291	161455481	161455391	161455391	Frame_Shift_Del	C	-	p.S87fs
ESCA	TCGA-IG-A4QT-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604680	160604680	Frame_Shift_Del	T	-	p.S296fs
ESCA	TCGA-L5-A8NM-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604680	160604680	Frame_Shift_Del	T	-	p.S296fs
ESCA	TCGA-L5-A8NM-01	MARK3	ENST00000303622.9,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000561071.1,ENST00000416682.2,ENST00000216288.7,ENST00000561225.1,ENST00000558223.1,ENST00000429436.2	chr14	103871470:103871604:103894723:103894777:103915255:103915304,	103894724	103894777	103894732	103894732	Frame_Shift_Del	A	-	p.I86fs
ESCA	TCGA-L5-A43J-01	MBD1	ENST00000591416.1,ENST00000339998.6,ENST00000424334.2,ENST00000398495.2,ENST00000269471.5,ENST00000349085.2,ENST00000457839.2,ENST00000590208.1,ENST00000398493.1,ENST00000585595.1,ENST00000347968.3,ENST00000398488.1,ENST00000269468.5,ENST00000436910.1,ENST00000588937.1,ENST00000587605.1,ENST00000586118.1,ENST00000589733.1,ENST00000382948.5,ENST00000591535.1	chr18	47802020:47802098:47802204:47802351:47802747:47802788,	47802205	47802351	47802303	47802304	Frame_Shift_Del	CA	-	p.C214fs
ESCA	TCGA-JY-A938-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.E314fs
ESCA	TCGA-JY-A938-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.E314fs
ESCA	TCGA-L5-A8NM-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.E314fs
ESCA	TCGA-L5-A8NM-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.E314fs
ESCA	TCGA-L5-A8NS-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921732	Frame_Shift_Del	G	-	p.G782fs
ESCA	TCGA-L5-A88Z-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289098	6289099	Frame_Shift_Ins	-	A	p.R107fs
ESCA	TCGA-L5-A8NN-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
ESCA	TCGA-JY-A938-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877786	150877786	Frame_Shift_Del	C	-	p.G338fs
ESCA	TCGA-Z6-A8JD-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838298	42838298	Frame_Shift_Del	G	-	p.G166fs
ESCA	TCGA-L5-A8NJ-01	MEI1	ENST00000540880.1,ENST00000401548.3,ENST00000476614.1,ENST00000300398.4,ENST00000482055.1,ENST00000400107.1	chr22	42154368:42154537:42159177:42159325:42166689:42166710,	42159178	42159325	42159250	42159250	Frame_Shift_Del	C	-	p.P733fs
ESCA	TCGA-L5-A4OI-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74899384:74899458:74900333:74900504:74901250:74901415,	74900334	74900504	74900438	74900438	Frame_Shift_Del	C	-	p.P221fs
ESCA	TCGA-VR-A8EU-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2,ENST00000433205.1	chr6	109769077:109769166:109769405:109769596:109769934:109770073,	109769406	109769596	109769427	109769428	Frame_Shift_Ins	-	C	p.K630fs
ESCA	TCGA-R6-A8WC-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301005	18301005	Frame_Shift_Del	C	-	p.K1475fs
ESCA	TCGA-R6-A8WC-01	MIER2	ENST00000264819.4	chr19	308821:308925:311844:311939:312190:312272,	311845	311939	311876	311876	Frame_Shift_Del	C	-	p.G318fs
ESCA	TCGA-JY-A939-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913974	129913974	Frame_Shift_Del	T	-	p.N233fs
ESCA	TCGA-LN-A8I0-01	MLIP	ENST00000514921.1,ENST00000511744.1,ENST00000502396.1	chr6	53989270:53989663:54001512:54003084:54013853:54013925,	54001513	54003084	54002293	54002293	Frame_Shift_Del	C	-	p.P476fs
ESCA	TCGA-Z6-A8JD-01	MLXIP	ENST00000319080.7	chr12	122616838:122616930:122617894:122618534:122619770:122619892,	122617895	122618534	122618301	122618301	Frame_Shift_Del	C	-	p.F501fs
ESCA	TCGA-IG-A4P3-01	MOV10	ENST00000468624.1,ENST00000496577.1,ENST00000369645.1,ENST00000413052.2,ENST00000369644.1,ENST00000357443.2	chr1	113234286:113234421:113235382:113235551:113236639:113236794,	113235383	113235551	113235508	113235508	Frame_Shift_Del	C	-	p.W367fs
ESCA	TCGA-L5-A43J-01	MRPL9	ENST00000467306.1	chr1	151734851:151734976:151735425:151735622:151735802:151735810,	151735426	151735622	151735572	151735573	Frame_Shift_Ins	-	C	p.R69fs
ESCA	TCGA-L5-A43J-01	MRPL9	ENST00000486707.1	chr1	151734851:151734976:151735430:151735622:151735802:151735810,	151735431	151735622	151735572	151735573	Frame_Shift_Ins	-	C	p.R69fs
ESCA	TCGA-L5-A43J-01	MRPL9	ENST00000368829.3,ENST00000481777.1,ENST00000461182.1,ENST00000478926.1	chr1	151734851:151734976:151735465:151735622:151735802:151735810,	151735466	151735622	151735572	151735573	Frame_Shift_Ins	-	C	p.R69fs
ESCA	TCGA-L5-A43E-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47635539:47635694:47637232:47637511:47639552:47639699,	47637233	47637511	47637242	47637242	Frame_Shift_Del	G	-	p.G126fs
ESCA	TCGA-L5-A8NM-01	MSL1	ENST00000579565.1,ENST00000577454.1,ENST00000578648.1	chr17	38279537:38279633:38282435:38282659:38285497:38285513,	38282436	38282659	38282534	38282535	Frame_Shift_Del	AG	-	p.E292fs
ESCA	TCGA-2H-A9GL-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.K700fs
ESCA	TCGA-LN-A8I0-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508454	195508455	Frame_Shift_Ins	-	C	p.S3332fs
ESCA	TCGA-VR-A8EP-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508454	195508455	Frame_Shift_Ins	-	C	p.S3332fs
ESCA	TCGA-IG-A3QL-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510227	195510228	Frame_Shift_Ins	-	G	p.T2741fs
ESCA	TCGA-ZR-A9CJ-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016221	1016224	Frame_Shift_Del	CAGA	-	p.S2193fs
ESCA	TCGA-2H-A9GQ-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016373	1016376	Frame_Shift_Del	GAAG	-	p.S2142fs
ESCA	TCGA-L5-A4OI-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.A141fs
ESCA	TCGA-L5-A43J-01	MYH11	ENST00000576790.2,ENST00000452625.2	chr16	15797847:15797980:15802659:15802698:15808765:15808824,	15802660	15802698	15802686	15802687	Frame_Shift_Ins	-	G	p.Q1941fs
ESCA	TCGA-L5-A4OI-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109644723:109644796:109661244:109661397:109672058:109672259,	109661245	109661397	109661386	109661386	Frame_Shift_Del	T	-	p.F842fs
ESCA	TCGA-L5-A4OI-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3134647:3134822:3135544:3135728:3141936:3142017,	3135545	3135728	3135553	3135554	Frame_Shift_Ins	-	C	p.D734fs
ESCA	TCGA-LN-A49P-01	MYRF	ENST00000278836.5,ENST00000265460.5	chr11	61536731:61536793:61537717:61537997:61538971:61539222,	61537718	61537997	61537890	61537893	Frame_Shift_Del	CCCG	-	p.P212fs
ESCA	TCGA-L5-A8NM-01	MZT2B	ENST00000409255.1	chr2	130940252:130940348:130941359:130941539:130948041:130948052,	130941360	130941539	130941391	130941391	Frame_Shift_Del	C	-	p.P119fs
ESCA	TCGA-L5-A8NM-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.N614fs
ESCA	TCGA-VR-A8EO-01	NCAPD3	ENST00000534548.2,ENST00000534532.2,ENST00000525964.2	chr11	134026912:134026990:134027822:134027962:134028223:134028390,	134027823	134027962	134027864	134027864	Frame_Shift_Del	A	-	p.F1378fs
ESCA	TCGA-L5-A4OI-01	NCEH1	ENST00000424772.1,ENST00000538775.1	chr3	172363412:172363482:172365651:172365904:172428636:172428842,	172365652	172365904	172365826	172365826	Frame_Shift_Del	T	-	p.S105fs
ESCA	TCGA-L5-A4OI-01	NCEH1	ENST00000273512.3	chr3	172363412:172363482:172365675:172365904:172428636:172428842,	172365676	172365904	172365826	172365826	Frame_Shift_Del	T	-	p.S105fs
ESCA	TCGA-L5-A8NW-01	NDRG2	ENST00000397858.1,ENST00000555869.1,ENST00000298687.5,ENST00000554104.1,ENST00000557353.1,ENST00000556147.1,ENST00000397856.3,ENST00000557182.1,ENST00000556008.1,ENST00000397847.2,ENST00000555733.1,ENST00000555695.1,ENST00000397844.2,ENST00000555158.1,ENST00000557169.1,ENST00000403829.3,ENST00000360463.3,ENST00000556366.1,ENST00000554143.1,ENST00000350792.3,ENST00000397851.2,ENST00000553593.1,ENST00000556974.1,ENST00000553867.1,ENST00000553503.1,ENST00000397853.3,ENST00000555026.1,ENST00000554277.1	chr14	21487856:21487901:21488078:21488135:21488654:21488741,	21488079	21488135	21488086	21488086	Frame_Shift_Del	A	-	p.F202fs
ESCA	TCGA-L5-A893-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047735	96047736	Frame_Shift_Ins	-	A	p.T119fs
ESCA	TCGA-2H-A9GF-01	NFATC1	ENST00000542384.1,ENST00000587635.1,ENST00000427363.2,ENST00000591814.1	chr18	77160330:77160479:77170402:77171501:77193578:77193738,77156224:77156351:77170402:77171501:77193578:77193738,	77170403	77171501	77170490	77170490	Frame_Shift_Del	T	-	p.Q73fs
ESCA	TCGA-LN-A5U5-01	NFE2L2	ENST00000423513.1,ENST00000446151.2,ENST00000397063.4	chr2	178097977:178098067:178098732:178098999:178129259:178129387,178097977:178098067:178098732:178098999:178128130:178128182,	178098733	178098999	178098944	178098945	Frame_Shift_Ins	-	T	p.R34fs
ESCA	TCGA-L5-A43J-01	NFYA	ENST00000353205.5,ENST00000341376.6	chr6	41057942:41058048:41059266:41059433:41060650:41060824,	41059267	41059433	41059278	41059279	Frame_Shift_Ins	-	T	p.S188fs
ESCA	TCGA-L5-A8NM-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985453	36985453	Frame_Shift_Del	C	-	p.P725fs
ESCA	TCGA-LN-A9FO-01	NME7	ENST00000524967.1,ENST00000528517.1,ENST00000469474.1,ENST00000527460.1,ENST00000491225.1,ENST00000367811.3,ENST00000525440.1,ENST00000472647.1	chr1	169279207:169279318:169292354:169292521:169293630:169293688,	169292355	169292521	169292492	169292493	Frame_Shift_Ins	-	A	p.L47fs
ESCA	TCGA-L5-A43J-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000605788.1,ENST00000461421.1,ENST00000476468.1,ENST00000488254.2,ENST00000464969.2	chr10	103918949:103919065:103919189:103919325:103919652:103919695,	103919190	103919325	103919299	103919299	Frame_Shift_Del	A	-	p.K290fs
ESCA	TCGA-VR-AA7D-01	NPHP3	ENST00000471702.1,ENST00000337331.5,ENST00000490993.1	chr3	132413670:132413809:132415574:132415657:132416103:132416206,	132415575	132415657	132415603	132415604	Frame_Shift_Ins	-	A	p.V714fs
ESCA	TCGA-L5-A4OR-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457918	64457919	Frame_Shift_Ins	-	C	p.A270fs
ESCA	TCGA-LN-A49O-01	NSUN4	ENST00000471871.1,ENST00000474844.1,ENST00000537428.1,ENST00000536062.1,ENST00000495427.1,ENST00000498008.1,ENST00000307089.3	chr1	46818539:46818700:46826375:46826500:46827241:46827666,	46826376	46826500	46826379	46826380	Frame_Shift_Ins	-	T	p.V254fs
ESCA	TCGA-L5-A8NM-01	NTHL1	ENST00000566380.1	chr16	2093567:2093727:2096128:2096367:2097709:2097744,	2096129	2096367	2096132	2096133	Frame_Shift_Ins	-	G	p.V127fs
ESCA	TCGA-L5-A4OI-01	NUB1	ENST00000483358.1,ENST00000468404.1,ENST00000413040.2,ENST00000355851.4,ENST00000470229.1,ENST00000566856.1,ENST00000568733.1,ENST00000470316.1	chr7	151042433:151042552:151046158:151046326:151048509:151048568,	151046159	151046326	151046320	151046320	Frame_Shift_Del	A	-	p.D120fs
ESCA	TCGA-LN-A4MQ-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726383	71726384	Frame_Shift_Ins	-	T	p.R723fs
ESCA	TCGA-L5-A8NH-01	NVL	ENST00000470989.1	chr1	224505579:224505632:224514092:224514166:224517772:224517823,224505579:224505627:224514092:224514166:224517772:224517823,	224514093	224514166	224514159	224514160	Frame_Shift_Ins	-	TA	p.T22fs
ESCA	TCGA-L5-A8NM-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28117008:28117068:28171272:28171400:28196929:28197038,	28171273	28171400	28171296	28171297	Frame_Shift_Ins	-	A	p.A685fs
ESCA	TCGA-LN-A4A6-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859371	48859372	Frame_Shift_Ins	-	A	p.E233fs
ESCA	TCGA-L5-A4OI-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.E233fs
ESCA	TCGA-L5-A4OI-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.H26fs
ESCA	TCGA-LN-A49X-01	OSBPL10	ENST00000438237.2,ENST00000396556.2,ENST00000429492.2	chr3	31743867:31744000:31774748:31774903:31789401:31789612,	31774749	31774903	31774849	31774849	Frame_Shift_Del	T	-	p.N332fs
ESCA	TCGA-L5-A4OI-01	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505296	56505296	Frame_Shift_Del	A	-	p.K369fs
ESCA	TCGA-VR-A8EO-01	PAAF1	ENST00000546039.1,ENST00000543079.1,ENST00000535604.1,ENST00000504441.2,ENST00000544552.1,ENST00000536003.1,ENST00000542293.1,ENST00000536582.1,ENST00000376384.5,ENST00000310571.3,ENST00000541951.1,ENST00000543814.1	chr11	73598398:73598502:73602156:73602246:73610190:73610289,	73602157	73602246	73602202	73602202	Frame_Shift_Del	T	-	p.L81fs
ESCA	TCGA-LN-A49M-01	PABPC4	ENST00000421687.2,ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000470443.1,ENST00000372862.3	chr1	40033422:40033518:40034473:40034611:40035266:40035361,	40034474	40034611	40034566	40034567	Frame_Shift_Del	AT	-	p.F262fs
ESCA	TCGA-L5-A8NS-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579890	2579890	Frame_Shift_Del	T	-	p.M332fs
ESCA	TCGA-LN-A7HZ-01	PANX1	ENST00000436171.2,ENST00000227638.3	chr11	93886656:93886796:93911534:93911758:93912767:93913423,	93911535	93911758	93911580	93911580	Frame_Shift_Del	C	-	p.P124fs
ESCA	TCGA-L5-A88T-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34805906:34806087:34985245:34985347:35103803:35104249,	34985246	34985347	34985330	34985331	Frame_Shift_Ins	-	A	p.Q47fs
ESCA	TCGA-IG-A8O2-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000417784.1,ENST00000317096.4	chr3	183551279:183551377:183551511:183551613:183558357:183558406,	183551512	183551613	183551540	183551547	Frame_Shift_Del	AGGAAAAT	-	p.I299fs
ESCA	TCGA-LN-A49K-01	PBX3	ENST00000373492.2,ENST00000538998.1,ENST00000373489.5,ENST00000342287.5,ENST00000373483.2,ENST00000447726.2,ENST00000373482.2	chr9	128691933:128692124:128697750:128697886:128722962:128723128,	128697751	128697886	128697755	128697755	Frame_Shift_Del	A	-	p.R239fs
ESCA	TCGA-VR-A8EU-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243246	141243246	Frame_Shift_Del	T	-	p.S884fs
ESCA	TCGA-LN-A8I1-01	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248589	141248589	Frame_Shift_Del	G	-	p.R150fs
ESCA	TCGA-L5-A4OI-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863768	47863768	Frame_Shift_Del	C	-	p.P3251fs
ESCA	TCGA-LN-A5U6-01	PDE8A	ENST00000478717.1,ENST00000557954.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000558543.1,ENST00000560789.1,ENST00000557819.2,ENST00000557957.1,ENST00000559742.1	chr15	85643386:85643429:85652283:85652361:85656607:85656631,	85652284	85652361	85652346	85652346	Frame_Shift_Del	T	-	p.S367fs
ESCA	TCGA-L5-A4OI-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.N1390fs
ESCA	TCGA-2H-A9GJ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087802	32087802	Frame_Shift_Del	A	-	p.S1419fs
ESCA	TCGA-R6-A6Y2-01	PFKP	ENST00000381075.2,ENST00000433193.1,ENST00000381125.4,ENST00000381072.1	chr10	3175426:3175506:3176674:3176774:3177927:3178030,	3176675	3176774	3176766	3176766	Frame_Shift_Del	G	-	p.G706fs
ESCA	TCGA-2H-A9GI-01	PHACTR2	ENST00000402863.3,ENST00000397980.3,ENST00000367582.3,ENST00000440869.2,ENST00000451827.2	chr6	143999309:143999346:144033152:144033320:144070121:144070202,	144033153	144033320	144033170	144033170	Frame_Shift_Del	G	-	p.A22fs
ESCA	TCGA-L5-A891-01	PHF19	ENST00000373896.3,ENST00000436309.1	chr9	123631576:123631608:123632122:123632223:123632720:123632816,	123632123	123632223	123632171	123632171	Frame_Shift_Del	C	-	p.L140fs
ESCA	TCGA-L5-A4OI-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.N322fs
ESCA	TCGA-V5-A7RE-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60630600:60630705:60639746:60639941:60642629:60642858,	60639747	60639941	60639886	60639887	Frame_Shift_Ins	-	A	p.T1236fs
ESCA	TCGA-LN-A8HZ-01	PIEZO2	ENST00000383408.2,ENST00000503781.3,ENST00000580640.1,ENST00000582913.1,ENST00000302079.6	chr18	10736601:10736708:10741028:10741100:10742491:10742613,	10741029	10741100	10741063	10741064	Frame_Shift_Ins	-	T	p.Q1559fs
ESCA	TCGA-L5-A8NM-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050026	44050026	Frame_Shift_Del	C	-	p.P348fs
ESCA	TCGA-L5-A43J-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.D315fs
ESCA	TCGA-L7-A56G-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.G232fs
ESCA	TCGA-L7-A56G-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.G232fs
ESCA	TCGA-L7-A56G-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.G232fs
ESCA	TCGA-LN-A7HV-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673298	75673298	Frame_Shift_Del	A	-	p.K156fs
ESCA	TCGA-2H-A9GL-01	PLCB1	ENST00000378641.3	chr20	8770824:8770908:8782702:8782820:8862268:8865547,	8782703	8782820	8782721	8782724	Frame_Shift_Del	TTCT	-	p.F1148fs
ESCA	TCGA-XP-A8T7-01	PLCB4	ENST00000482123.1,ENST00000473151.1	chr20	9351860:9351942:9352949:9353050:9360700:9360809,	9352950	9353050	9352984	9352984	Frame_Shift_Del	A	-	p.K208fs
ESCA	TCGA-LN-A4A2-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000373272.2	chr20	39798828:39798909:39800832:39800929:39801060:39801285,	39800833	39800929	39800921	39800922	Frame_Shift_Ins	-	G	p.D966fs
ESCA	TCGA-V5-AASV-01	POLR1C	ENST00000428025.2,ENST00000372389.3,ENST00000304004.3,ENST00000372344.2	chr6	43487443:43487576:43487803:43487923:43488012:43488050,	43487804	43487923	43487822	43487825	Frame_Shift_Del	AGAT	-	p.D136fs
ESCA	TCGA-L5-A4OI-01	POLR1C	ENST00000488601.2,ENST00000372389.3,ENST00000304004.3	chr6	43487803:43487923:43488012:43488165:43488669:43488786,43487806:43487923:43488012:43488165:43488362:43488441,	43488013	43488165	43488038	43488038	Frame_Shift_Del	C	-	p.L178fs
ESCA	TCGA-L5-A4OI-01	POLR3B	ENST00000539066.1,ENST00000228347.4	chr12	106824050:106824251:106826095:106826258:106827496:106827650,	106826096	106826258	106826212	106826213	Frame_Shift_Ins	-	G	p.E528fs
ESCA	TCGA-L5-A4OI-01	PON2	ENST00000491069.1	chr7	95041635:95041789:95045483:95045609:95053826:95053897,	95045484	95045609	95045559	95045560	Frame_Shift_Ins	-	A	p.S86fs
ESCA	TCGA-L5-A4OI-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000493290.1	chr7	95041635:95041789:95045553:95045609:95053826:95053897,	95045554	95045609	95045559	95045560	Frame_Shift_Ins	-	A	p.S86fs
ESCA	TCGA-L5-A43J-01	POR	ENST00000447222.1	chr7	75608768:75608897:75609656:75610040:75610365:75610490,	75609657	75610040	75609955	75609955	Frame_Shift_Del	C	-	p.P44fs
ESCA	TCGA-L5-A8NM-01	PPOX	ENST00000479246.1,ENST00000352210.5,ENST00000367999.4	chr1	161137160:161137276:161137784:161137917:161138782:161138973,161137160:161137276:161137784:161137917:161138221:161138335,	161137785	161137917	161137885	161137886	Frame_Shift_Del	CA	-	p.H147fs
ESCA	TCGA-Z6-A8JE-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30652643	30652643	Frame_Shift_Del	C	-	p.A385fs
ESCA	TCGA-XP-A8T6-01	PPP6R2	ENST00000216061.5	chr22	50878389:50878478:50879229:50879455:50882294:50882546,	50879230	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.P854fs
ESCA	TCGA-XP-A8T6-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000359139.3,ENST00000401672.3,ENST00000427222.2	chr22	50878389:50878478:50879250:50879455:50882294:50882546,	50879251	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.P854fs
ESCA	TCGA-R6-A6Y0-01	PPT2	ENST00000375143.2,ENST00000324816.6,ENST00000445576.2,ENST00000395523.1,ENST00000375137.2,ENST00000414204.1,ENST00000361568.2	chr6	32122363:32122554:32122806:32122960:32123544:32123560,32122363:32122554:32122806:32122960:32123464:32123560,	32122807	32122960	32122851	32122854	Frame_Shift_Del	GAGA	-	p.E84fs
ESCA	TCGA-VR-AA7I-01A-11D-A403-09	PRKAR2B	ENST00000265717.4	chr7	106797428:106797494:106797630:106797769:106799893:106800034,	106797631	106797769	106797765	106797765	Frame_Shift_Del	T	-	p.L374fs
ESCA	TCGA-L5-A43J-01	PRKDC	ENST00000518216.1,ENST00000523565.1	chr8	48802817:48803041:48805699:48805947:48809720:48809854,	48805700	48805947	48805866	48805866	Frame_Shift_Del	C	-	p.G1227fs
ESCA	TCGA-L5-A8NF-01	PRKG1	ENST00000373975.2	chr10	53822296:53822391:53841356:53841417:53893599:53893665,	53841357	53841417	53841384	53841384	Frame_Shift_Del	A	-	p.N5fs
ESCA	TCGA-L5-A43J-01	PRR11	ENST00000581182.1,ENST00000578542.1,ENST00000580177.1	chr17	57233117:57233166:57247108:57247241:57262414:57262565,	57247109	57247241	57247171	57247171	Frame_Shift_Del	A	-	p.E23fs
ESCA	TCGA-L5-A43J-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134350640	134350640	Frame_Shift_Del	C	-	p.M1044fs
ESCA	TCGA-L5-A43J-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351550	134351551	Frame_Shift_Del	TG	-	p.C1346fs
ESCA	TCGA-L5-A4OI-01	PRSS3	ENST00000457896.1,ENST00000342836.4	chr9	33750687:33750725:33794743:33794871:33796640:33796800,	33794744	33794871	33794798	33794799	Frame_Shift_Del	GA	-	p.E5fs
ESCA	TCGA-L5-A43J-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
ESCA	TCGA-LN-A8HZ-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
ESCA	TCGA-L5-A8NW-01	PRUNE2	ENST00000223609.6,ENST00000466266.2,ENST00000443509.2,ENST00000428286.1,ENST00000376718.3,ENST00000376717.2	chr9	79252454:79252465:79253101:79253204:79259654:79259825,	79253102	79253204	79253189	79253189	Frame_Shift_Del	C	-	p.G2557fs
ESCA	TCGA-S8-A6BW-01	PSMG1	ENST00000431628.1,ENST00000331573.3,ENST00000411828.1	chr21	40550374:40550573:40551849:40551912:40552210:40552332,	40551850	40551912	40551903	40551904	Frame_Shift_Del	AG	-	p.C135fs
ESCA	TCGA-IG-A3QL-01	PTCH2	ENST00000372192.3,ENST00000447098.2	chr1	45294653:45294746:45294828:45294984:45295073:45295205,	45294829	45294984	45294908	45294908	Frame_Shift_Del	A	-	p.L431fs
ESCA	TCGA-L5-A4OI-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000597793.1,ENST00000598325.1,ENST00000601093.1	chr19	50363350:50363440:50363524:50363593:50363870:50363982,	50363525	50363593	50363527	50363527	Frame_Shift_Del	G	-	p.*417fs
ESCA	TCGA-L5-A8NM-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000597793.1,ENST00000598325.1,ENST00000601093.1	chr19	50363350:50363440:50363524:50363593:50363870:50363982,	50363525	50363593	50363527	50363527	Frame_Shift_Del	G	-	p.*417fs
ESCA	TCGA-L5-A4OI-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49196239:49196463:49197801:49197997:49199228:49199522,	49197802	49197997	49197838	49197838	Frame_Shift_Del	G	-	p.G377fs
ESCA	TCGA-IG-A3YC-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557130	214557131	Frame_Shift_Ins	-	A	p.P689fs
ESCA	TCGA-L5-A8NM-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899920	Frame_Shift_Del	A	-	p.K134fs
ESCA	TCGA-Z6-A9VB-01	QPCT	ENST00000537448.1,ENST00000404976.1,ENST00000338415.3,ENST00000480050.1	chr2	37586722:37587001:37594374:37594551:37596827:37596845,	37594375	37594551	37594505	37594505	Frame_Shift_Del	C	-	p.P227fs
ESCA	TCGA-L5-A4OE-01	R3HCC1	ENST00000522012.1	chr8	23147378:23147732:23147847:23147982:23148873:23148981,	23147848	23147982	23147887	23147887	Frame_Shift_Del	A	-	p.R293fs
ESCA	TCGA-L5-A4OI-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696716	17696716	Frame_Shift_Del	C	-	p.S154fs
ESCA	TCGA-IG-A6QS-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697099	17697100	Frame_Shift_Del	GC	-	p.Q280fs
ESCA	TCGA-L5-A893-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384333	109384333	Frame_Shift_Del	T	-	p.S2447fs
ESCA	TCGA-IG-A51D-01	RBBP7	ENST00000425696.1,ENST00000380084.4,ENST00000404022.1,ENST00000330735.3,ENST00000380087.2	chrX	16863150:16863226:16863950:16864061:16867366:16867424,	16863951	16864061	16864049	16864050	Frame_Shift_Del	CT	-	p.G371fs
ESCA	TCGA-LN-A9FQ-01	RBKS	ENST00000449378.1	chr2	28081367:28081438:28092638:28093757:28113123:28113217,	28092639	28093757	28093733	28093734	Frame_Shift_Ins	-	T	p.Y38fs
ESCA	TCGA-KH-A6WC-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647319	145647320	Frame_Shift_Ins	-	A	p.Q816fs
ESCA	TCGA-L5-A4OU-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647319	145647320	Frame_Shift_Ins	-	A	p.Q816fs
ESCA	TCGA-R6-A6XQ-01	RBM27	ENST00000265271.5	chr5	145650516:145650621:145651045:145651237:145664184:145664295,	145651046	145651237	145651199	145651199	Frame_Shift_Del	A	-	p.I984fs
ESCA	TCGA-L5-A4OI-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.D99fs
ESCA	TCGA-L5-A4OI-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.D99fs
ESCA	TCGA-L5-A4OI-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654702	167654702	Frame_Shift_Del	C	-	p.L53fs
ESCA	TCGA-L5-A4OI-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112461	36112461	Frame_Shift_Del	A	-	p.N685fs
ESCA	TCGA-2H-A9GR-01	RETN	ENST00000221515.2	chr19	7734212:7734330:7734706:7734784:7735104:7735235,	7734707	7734784	7734758	7734758	Frame_Shift_Del	G	-	p.D59fs
ESCA	TCGA-ZR-A9CJ-01	RFC1	ENST00000381897.1	chr4	39308211:39308321:39310255:39310652:39313064:39313169,39308253:39308324:39310255:39310652:39313064:39313169,	39310256	39310652	39310612	39310612	Frame_Shift_Del	T	-	p.N510fs
ESCA	TCGA-L5-A4OI-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62637665:62637816:62645869:62645988:62647969:62648227,	62645870	62645988	62645896	62645897	Frame_Shift_Ins	-	C	p.S516fs
ESCA	TCGA-Q9-A6FU-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320541	152320541	Frame_Shift_Del	A	-	p.K1505fs
ESCA	TCGA-L5-A4OI-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956393	19956394	Frame_Shift_Ins	-	C	p.I627fs
ESCA	TCGA-LN-A4A2-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630641	158630642	Frame_Shift_Ins	-	T	p.K26fs
ESCA	TCGA-L5-A43J-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630642	158630642	Frame_Shift_Del	T	-	p.K25fs
ESCA	TCGA-L5-A4OI-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630642	158630642	Frame_Shift_Del	T	-	p.K25fs
ESCA	TCGA-L5-A43J-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
ESCA	TCGA-2H-A9GF-01	RPL38	ENST00000533498.1,ENST00000584577.1,ENST00000534490.1,ENST00000439590.2,ENST00000311111.6	chr17	72200056:72200097:72200268:72200329:72205325:72205448,	72200269	72200329	72200319	72200319	Frame_Shift_Del	G	-	p.D19fs
ESCA	TCGA-L5-A4OR-01	RPL7A	ENST00000315731.4,ENST00000463740.1,ENST00000489392.1,ENST00000468019.1,ENST00000323345.6	chr9	136217451:136217582:136217856:136217926:136218116:136218227,	136217857	136217926	136217908	136217909	Frame_Shift_Ins	-	A	p.N226fs
ESCA	TCGA-L5-A4OH-01	RPS19	ENST00000221975.2	chr19	42364326:42364359:42364854:42364915:42365180:42365281,	42364855	42364915	42364855	42364855	Frame_Shift_Del	T	-	p.T5fs
ESCA	TCGA-L5-A4OH-01	RPS19	ENST00000601492.1,ENST00000598466.1	chr19	42364326:42364359:42364844:42364915:42365180:42365281,	42364845	42364915	42364855	42364855	Frame_Shift_Del	T	-	p.T5fs
ESCA	TCGA-2H-A9GO-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
ESCA	TCGA-LN-A9FQ-01	SAP30BP	ENST00000580322.1	chr17	73700835:73700894:73701690:73702172:73702419:73702486,	73701691	73702172	73702109	73702109	Frame_Shift_Del	A	-	p.G230fs
ESCA	TCGA-LN-A9FQ-01	SAP30BP	ENST00000355423.3,ENST00000583536.1,ENST00000583329.1,ENST00000581385.1,ENST00000580601.1,ENST00000582022.1,ENST00000578756.1,ENST00000584667.1,ENST00000542343.1	chr17	73700835:73700894:73702087:73702172:73702419:73702486,	73702088	73702172	73702109	73702109	Frame_Shift_Del	A	-	p.G230fs
ESCA	TCGA-L5-A43J-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158042	Frame_Shift_Del	C	-	p.T1181fs
ESCA	TCGA-L5-A4OI-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321475	46321475	Frame_Shift_Del	T	-	p.N670fs
ESCA	TCGA-L5-A4OI-01	SCCPDH	ENST00000366510.3	chr1	246923258:246923378:246923472:246923529:246927547:246927659,	246923473	246923529	246923522	246923522	Frame_Shift_Del	A	-	p.K329fs
ESCA	TCGA-V5-AASW-01	SEC16A	ENST00000371706.3	chr9	139336130:139336275:139338274:139338352:139340096:139340171,139336130:139336275:139338274:139338352:139341306:139341401,	139338275	139338352	139338310	139338310	Frame_Shift_Del	C	-	p.A2324fs
ESCA	TCGA-JY-A938-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39545138:39545297:39554965:39555110:39556132:39556212,	39554966	39555110	39555000	39555001	Frame_Shift_Ins	-	T	p.G265fs
ESCA	TCGA-L5-A4OI-01	SEC63	ENST00000446496.1	chr6	108250618:108250718:108277168:108277310:108279089:108279135,	108277169	108277310	108277241	108277242	Frame_Shift_Ins	-	G	p.R65fs
ESCA	TCGA-LN-A8I0-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25785849:25785912:25789845:25789986:25792076:25792196,	25789846	25789986	25789889	25789889	Frame_Shift_Del	T	-	p.E725fs
ESCA	TCGA-L5-A8NS-01	SEPT7	ENST00000475109.1	chr7	35840828:35840880:35872407:35872503:35903161:35903268,	35872408	35872503	35872451	35872452	Frame_Shift_Ins	-	A	p.N39fs
ESCA	TCGA-LN-A4A5-01	SF1	ENST00000334944.5	chr11	64532761:64532990:64533422:64533627:64534371:64534409,	64533423	64533627	64533469	64533469	Frame_Shift_Del	C	-	p.A581fs
ESCA	TCGA-L5-A4OG-01	SFI1	ENST00000443011.1,ENST00000466991.1,ENST00000414585.1,ENST00000443326.1,ENST00000400289.1,ENST00000400288.2,ENST00000432498.1,ENST00000417682.2,ENST00000524296.1,ENST00000540643.1	chr22	32000854:32000931:32002313:32002416:32003922:32004019,	32002314	32002416	32002366	32002366	Frame_Shift_Del	A	-	p.T705fs
ESCA	TCGA-L5-A4OT-01	SFI1	ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000432498.1,ENST00000417682.2,ENST00000382162.3,ENST00000540643.1	chr22	32009339:32009516:32009587:32009841:32010774:32010846,	32009588	32009841	32009640	32009641	Frame_Shift_Del	AG	-	p.K933fs
ESCA	TCGA-L5-A4OI-01	SH3BP1	ENST00000417536.1	chr22	38049790:38049880:38051278:38051322:38051932:38052048,	38051279	38051322	38051313	38051314	Frame_Shift_Ins	-	C	p.Q578fs
ESCA	TCGA-L5-A8NS-01	SHROOM2	ENST00000418909.2,ENST00000380913.3,ENST00000452575.1	chrX	9900214:9900910:9905173:9905725:9907234:9907406,	9905174	9905725	9905366	9905367	Frame_Shift_Ins	-	T	p.C1260fs
ESCA	TCGA-L5-A43M-01	SIGMAR1	ENST00000353468.4	chr9	34637011:34637086:34637263:34637417:34637543:34637680,	34637264	34637417	34637400	34637400	Frame_Shift_Del	C	-	p.A57fs
ESCA	TCGA-L5-A43M-01	SIGMAR1	ENST00000277010.4	chr9	34637011:34637086:34637216:34637417:34637543:34637680,	34637217	34637417	34637400	34637400	Frame_Shift_Del	C	-	p.A57fs
ESCA	TCGA-IG-A97H-01	SIK1	ENST00000270162.6	chr21	44837422:44837654:44838139:44838421:44838900:44839091,	44838140	44838421	44838214	44838214	Frame_Shift_Del	C	-	p.G557fs
ESCA	TCGA-R6-A8W8-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054755	72054755	Frame_Shift_Del	C	-	p.R58fs
ESCA	TCGA-L5-A4OI-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203598	91203598	Frame_Shift_Del	A	-	p.F73fs
ESCA	TCGA-2H-A9GQ-01	SLC1A5	ENST00000412532.2	chr19	47287353:47287401:47287773:47287816:47290495:47290599,	47287774	47287816	47287780	47287780	Frame_Shift_Del	A	-	p.R202fs
ESCA	TCGA-L5-A8NS-01	SLC22A5	ENST00000415928.1,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1	chr5	131719838:131719993:131721019:131721191:131722716:131722843,	131721020	131721191	131721070	131721071	Frame_Shift_Del	GT	-	p.C260fs
ESCA	TCGA-IG-A50L-01	SLC22A9	ENST00000279178.3,ENST00000536333.1,ENST00000310969.4	chr11	63143116:63143240:63149630:63149749:63173968:63174183,	63149631	63149749	63149670	63149671	Frame_Shift_Ins	-	A	p.K336fs
ESCA	TCGA-L5-A8NH-01	SLC25A23	ENST00000264088.4	chr19	6454569:6454728:6455962:6456103:6456430:6456542,	6455963	6456103	6456040	6456040	Frame_Shift_Del	T	-	p.T183fs
ESCA	TCGA-L5-A4OI-01	SLC29A3	ENST00000373189.5	chr10	73103965:73104048:73111318:73111545:73115837:73116000,	73111319	73111545	73111425	73111425	Frame_Shift_Del	T	-	p.F165fs
ESCA	TCGA-L5-A4OI-01	SLC35F5	ENST00000409106.1,ENST00000245680.2	chr2	114493353:114493435:114500268:114500456:114501289:114501371,	114500269	114500456	114500277	114500278	Frame_Shift_Del	AA	-	p.F247fs
ESCA	TCGA-V5-AASV-01	SLC4A9	ENST00000507527.1,ENST00000230993.6,ENST00000506757.2	chr5	139745104:139745154:139745418:139745607:139745735:139745849,139745104:139745163:139745418:139745607:139745735:139745849,	139745419	139745607	139745542	139745545	Frame_Shift_Del	CTTA	-	p.T637fs
ESCA	TCGA-IG-A50L-01	SLC5A6	ENST00000310574.3,ENST00000408041.1,ENST00000488743.2	chr2	27427328:27427458:27427658:27427799:27428217:27428372,	27427659	27427799	27427736	27427737	Frame_Shift_Ins	-	A	p.M266fs
ESCA	TCGA-IG-A7DP-01	SLC6A4	ENST00000401766.2,ENST00000394821.2,ENST00000261707.3	chr17	28545135:28545355:28545814:28545949:28548633:28549099,	28545815	28545949	28545833	28545833	Frame_Shift_Del	T	-	p.I154fs
ESCA	TCGA-L5-A4OI-01	SLC9A8	ENST00000417961.1	chr20	48466115:48466217:48467298:48467381:48471974:48472118,	48467299	48467381	48467300	48467301	Frame_Shift_Ins	-	T	p.F183fs
ESCA	TCGA-LN-A4A3-01	SLC9A8	ENST00000417961.1	chr20	48466115:48466217:48467298:48467381:48471974:48472118,	48467299	48467381	48467300	48467301	Frame_Shift_Ins	-	T	p.F183fs
ESCA	TCGA-L5-A4OI-01	SLC9A8	ENST00000417961.1	chr20	48466115:48466217:48467298:48467381:48471974:48472118,	48467299	48467381	48467301	48467301	Frame_Shift_Del	T	-	p.F182fs
ESCA	TCGA-L5-A8NM-01	SLCO2A1	ENST00000462770.1,ENST00000493729.1,ENST00000310926.4	chr3	133663938:133664104:133666099:133666289:133667379:133667544,	133666100	133666289	133666102	133666103	Frame_Shift_Ins	-	G	p.S432fs
ESCA	TCGA-L5-A8NM-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182525	59182526	Frame_Shift_Del	TC	-	p.R678fs
ESCA	TCGA-L5-A4OI-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182564	59182565	Frame_Shift_Del	CT	-	p.E665fs
ESCA	TCGA-LN-A4MQ-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.K172fs
ESCA	TCGA-ZR-A9CJ-01	SMARCA2	ENST00000349721.2,ENST00000382203.1,ENST00000357248.2,ENST00000382194.1	chr9	2110253:2110417:2115821:2116049:2119457:2119535,	2115822	2116049	2115910	2115910	Frame_Shift_Del	A	-	p.K1183fs
ESCA	TCGA-R6-A6XG-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559127	56559128	Frame_Shift_Ins	-	G	p.G1039fs
ESCA	TCGA-L5-A8NM-01	SMCO2	ENST00000538647.1	chr12	27627828:27627846:27628514:27628664:27648612:27648731,	27628515	27628664	27628630	27628630	Frame_Shift_Del	A	-	p.I162fs
ESCA	TCGA-L5-A8NQ-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515266	183515267	Frame_Shift_Ins	-	A	p.M803fs
ESCA	TCGA-LN-A49W-01	SMPDL3A	ENST00000487215.1	chr6	123110470:123110603:123116821:123117035:123117968:123118113,	123116822	123117035	123116827	123116827	Frame_Shift_Del	T	-	p.W41fs
ESCA	TCGA-L5-A4OI-01	SNAP47	ENST00000426344.1,ENST00000366759.4,ENST00000315781.5	chr1	227923136:227923200:227935392:227935934:227946695:227947186,	227935393	227935934	227935790	227935790	Frame_Shift_Del	G	-	p.G164fs
ESCA	TCGA-L5-A4OG-01	SNAP91	ENST00000520302.1	chr6	84302173:84302257:84302664:84302736:84302900:84302978,84300929:84301013:84302664:84302736:84302900:84302978,	84302665	84302736	84302714	84302714	Frame_Shift_Del	T	-	p.A601fs
ESCA	TCGA-LN-A8I1-01	SND1	ENST00000354725.3	chr7	127721411:127721553:127724775:127724899:127725762:127725832,	127724776	127724899	127724828	127724828	Frame_Shift_Del	C	-	p.P723fs
ESCA	TCGA-L5-A43J-01	SNRNP25	ENST00000397876.2	chr16	105793:105882:106320:106420:106538:106613,	106321	106420	106355	106356	Frame_Shift_Del	CT	-	p.*93fs
ESCA	TCGA-L5-A4OI-01	SNUPN	ENST00000371091.5,ENST00000564644.1	chr15	75913386:75913397:75917055:75917276:75917676:75917979,	75917056	75917276	75917121	75917121	Frame_Shift_Del	T	-	p.N19fs
ESCA	TCGA-L5-A8NM-01	SOGA1	ENST00000456801.2,ENST00000465671.1	chr20	35412184:35412761:35414812:35415040:35421651:35423002,	35414813	35415040	35414897	35414897	Frame_Shift_Del	G	-	p.S1660fs
ESCA	TCGA-RE-A7BO-01	SORBS1	ENST00000607232.1	chr10	97114638:97114724:97115383:97116862:97117387:97117534,	97115384	97116862	97116139	97116139	Frame_Shift_Del	C	-	p.G718fs
ESCA	TCGA-2H-A9GH-01	SORBS1	ENST00000486141.2,ENST00000371239.1,ENST00000353505.5,ENST00000361941.3,ENST00000347291.4,ENST00000393949.1,ENST00000371245.3,ENST00000474353.2,ENST00000465489.1,ENST00000371249.2,ENST00000371246.2,ENST00000277982.5,ENST00000371247.2,ENST00000354106.3,ENST00000371227.4,ENST00000306402.6,ENST00000371241.1	chr10	97158773:97158946:97165874:97165904:97170389:97170534,	97165875	97165904	97165894	97165894	Frame_Shift_Del	T	-	p.K322fs
ESCA	TCGA-L5-A8NM-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186544439	186544439	Frame_Shift_Del	T	-	p.N711fs
ESCA	TCGA-Q9-A6FU-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091377	204091377	Frame_Shift_Del	C	-	p.L293fs
ESCA	TCGA-R6-A6Y2-01	SPAG17	ENST00000336338.5	chr1	118640292:118640474:118642228:118642423:118644362:118644549,	118642229	118642423	118642303	118642303	Frame_Shift_Del	G	-	p.S252fs
ESCA	TCGA-L5-A8NM-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705894	35705895	Frame_Shift_Del	AA	-	p.K886fs
ESCA	TCGA-VR-A8EY-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705894	35705894	Frame_Shift_Del	A	-	p.K886fs
ESCA	TCGA-VR-A8EY-01	SPG11	ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44859621:44859790:44862722:44862856:44864880:44865018,44861595:44861703:44862722:44862856:44864880:44865018,	44862723	44862856	44862814	44862815	Frame_Shift_Del	GT	-	p.T2129fs
ESCA	TCGA-LN-A4A2-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44903037:44903183:44905627:44905734:44907560:44907764,	44905628	44905734	44905697	44905698	Frame_Shift_Ins	-	T	p.E1025fs
ESCA	TCGA-L5-A8NM-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736371	Frame_Shift_Del	C	-	p.P1878fs
ESCA	TCGA-R6-A6XG-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.P1878fs
ESCA	TCGA-LN-A8I1-01	SREBF2	ENST00000361204.4	chr22	42273232:42273425:42273945:42274127:42276719:42276996,	42273946	42274127	42274003	42274004	Frame_Shift_Del	GT	-	p.V547fs
ESCA	TCGA-L5-A43J-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000373822.1,ENST00000423325.2,ENST00000346162.6,ENST00000510290.1	chr6	35837443:35837678:35838057:35838271:35838710:35838732,	35838058	35838271	35838144	35838145	Frame_Shift_Ins	-	T	p.R302fs
ESCA	TCGA-L5-A4OH-01	SSUH2	ENST00000420394.1,ENST00000544814.1,ENST00000413305.1,ENST00000435138.1,ENST00000415132.1,ENST00000495366.1,ENST00000455157.2,ENST00000317371.4,ENST00000341795.3	chr3	8669383:8669469:8671349:8671412:8672490:8672615,	8671350	8671412	8671350	8671351	Frame_Shift_Ins	-	A	p.V197fs
ESCA	TCGA-JY-A93C-01	STAMBPL1	ENST00000371927.3,ENST00000371926.3,ENST00000371924.1	chr10	90670672:90670768:90672857:90673215:90674290:90674415,	90672858	90673215	90672881	90672882	Frame_Shift_Ins	-	A	p.L150fs
ESCA	TCGA-LN-A7HW-01	STAT6	ENST00000554764.1,ENST00000543873.2,ENST00000300134.3,ENST00000555222.1,ENST00000454075.3,ENST00000538913.2,ENST00000537215.2,ENST00000556155.1	chr12	57490632:57490761:57490850:57490916:57492287:57492373,	57490851	57490916	57490895	57490895	Frame_Shift_Del	G	-	p.S728fs
ESCA	TCGA-JY-A6FE-01	STYXL1	ENST00000460184.2,ENST00000474328.1,ENST00000360591.3,ENST00000340062.5,ENST00000451157.1	chr7	75657959:75658021:75659738:75659842:75677129:75677271,	75659739	75659842	75659797	75659798	Frame_Shift_Ins	-	A	p.L16fs
ESCA	TCGA-JY-A6FE-01	STYXL1	ENST00000359697.3	chr7	75657959:75658021:75659738:75659845:75677129:75677271,75657959:75658021:75659738:75659845:75676979:75677281,	75659739	75659845	75659797	75659798	Frame_Shift_Ins	-	A	p.L16fs
ESCA	TCGA-L5-A4OI-01	SUCO	ENST00000263688.3,ENST00000610051.1,ENST00000367723.4,ENST00000608151.1	chr1	172548341:172548407:172554157:172554226:172554997:172555088,	172554158	172554226	172554204	172554204	Frame_Shift_Del	A	-	p.T669fs
ESCA	TCGA-R6-A8W5-01	SUMO1	ENST00000409627.2	chr2	203084754:203084829:203096265:203096455:203103162:203103185,	203096266	203096455	203096349	203096349	Frame_Shift_Del	A	-	p.L40fs
ESCA	TCGA-LN-A49X-01	SUPT16H	ENST00000216297.2	chr14	21833228:21833302:21834597:21834688:21836427:21836600,	21834598	21834688	21834640	21834640	Frame_Shift_Del	T	-	p.K335fs
ESCA	TCGA-V5-A7RE-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430251	115430252	Frame_Shift_Ins	-	A	p.N401fs
ESCA	TCGA-VR-A8EU-01	SYCP2	ENST00000425931.1	chr20	58495413:58495542:58496364:58496505:58497444:58497473,	58496365	58496505	58496393	58496393	Frame_Shift_Del	A	-	p.F47fs
ESCA	TCGA-VR-A8EU-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58495413:58495542:58496364:58496508:58497444:58497473,	58496365	58496508	58496393	58496393	Frame_Shift_Del	A	-	p.F47fs
ESCA	TCGA-V5-A7RC-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648545	85648546	Frame_Shift_Ins	-	A	p.L593fs
ESCA	TCGA-L5-A8NM-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508008	158508009	Frame_Shift_Ins	-	C	p.P1113fs
ESCA	TCGA-L5-A8NM-01	TACC1	ENST00000522904.1,ENST00000520973.1,ENST00000518415.1,ENST00000520615.1,ENST00000317827.4,ENST00000443286.2,ENST00000520340.1	chr8	38646221:38646337:38677039:38678153:38682825:38682886,	38677040	38678153	38677720	38677721	Frame_Shift_Ins	-	T	p.E321fs
ESCA	TCGA-L5-A8NM-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730307	1730308	Frame_Shift_Ins	-	C	p.M396fs
ESCA	TCGA-M9-A5M8-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471452	93471453	Frame_Shift_Ins	-	T	p.K95fs
ESCA	TCGA-M9-A5M8-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471452	93471453	Frame_Shift_Ins	-	T	p.K95fs
ESCA	TCGA-2H-A9GF-01	TANC1	ENST00000263635.6,ENST00000454300.1	chr2	160031463:160031695:160032862:160033029:160035066:160035674,	160032863	160033029	160032893	160032893	Frame_Shift_Del	T	-	p.L590fs
ESCA	TCGA-IC-A6RE-01	TATDN1	ENST00000522310.1	chr8	125528164:125528271:125530982:125531122:125535177:125535243,	125530983	125531122	125531026	125531027	Frame_Shift_Ins	-	T	p.*62fs
ESCA	TCGA-JY-A938-01	TBC1D31	ENST00000309336.3,ENST00000522420.1,ENST00000521676.1,ENST00000327098.5,ENST00000287380.1,ENST00000518577.1	chr8	124138747:124138927:124140520:124140753:124141309:124141458,124138747:124138927:124140520:124140753:124141305:124141412,	124140521	124140753	124140521	124140521	Frame_Shift_Del	T	-	p.H632fs
ESCA	TCGA-Q9-A6FW-01	TC2N	ENST00000340892.5,ENST00000360594.5,ENST00000435962.2	chr14	92253856:92253971:92258710:92258902:92264128:92264240,	92258711	92258902	92258843	92258844	Frame_Shift_Ins	-	A	p.R306fs
ESCA	TCGA-V5-AASW-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000560764.1,ENST00000537840.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57524909:57525054:57526240:57526305:57535669:57535713,	57526241	57526305	57526275	57526276	Frame_Shift_Ins	-	CT	p.G335fs
ESCA	TCGA-L5-A8NM-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564716	42564716	Frame_Shift_Del	G	-	p.L1943fs
ESCA	TCGA-L5-A43J-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115986880	115986880	Frame_Shift_Del	A	-	p.N1077fs
ESCA	TCGA-L5-A4OI-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179609513:179609580:179620001:179620202:179621173:179621332,	179620002	179620202	179620102	179620102	Frame_Shift_Del	T	-	p.L636fs
ESCA	TCGA-L5-A43J-01	TECPR1	ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000483740.1,ENST00000490842.1	chr7	97858355:97858478:97860272:97860430:97860535:97860685,	97860273	97860430	97860399	97860399	Frame_Shift_Del	C	-	p.S720fs
ESCA	TCGA-L5-A4OI-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158026	27158026	Frame_Shift_Del	A	-	p.V86fs
ESCA	TCGA-R6-A8W8-01	TENM3	ENST00000511685.1,ENST00000406950.2	chr4	183245173:183245405:183267803:183268082:183522076:183522314,	183267804	183268082	183267981	183267981	Frame_Shift_Del	G	-	p.V139fs
ESCA	TCGA-LN-A8HZ-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156651	106156652	Frame_Shift_Ins	-	T	p.G520fs
ESCA	TCGA-L5-A43J-01	TFAP2A	ENST00000497266.1,ENST00000478375.1,ENST00000475264.1,ENST00000482890.1,ENST00000488193.1,ENST00000379608.3,ENST00000466073.1,ENST00000379604.2,ENST00000489805.1,ENST00000379613.3,ENST00000319516.4,ENST00000490875.1,ENST00000473652.1	chr6	10404900:10404972:10407025:10407077:10410133:10410327,	10407026	10407077	10407037	10407038	Frame_Shift_Del	AC	-	p.V174fs
ESCA	TCGA-2H-A9GK-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042123	134042123	Frame_Shift_Del	G	-	p.V2366fs
ESCA	TCGA-L5-A43C-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56699011	56699011	Frame_Shift_Del	A	-	p.N186fs
ESCA	TCGA-2H-A9GF-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134235	128134238	Frame_Shift_Del	ACTA	-	p.S517fs
ESCA	TCGA-L5-A4OI-01	TIE1	ENST00000538015.1,ENST00000372476.3,ENST00000441333.2	chr1	43772510:43772666:43772812:43772944:43773102:43773243,	43772813	43772944	43772910	43772910	Frame_Shift_Del	C	-	p.P248fs
ESCA	TCGA-2H-A9GK-01	TMEM196	ENST00000405844.1,ENST00000422233.1	chr7	19761475:19761757:19763902:19763976:19765136:19765391,	19763903	19763976	19763924	19763924	Frame_Shift_Del	G	-	p.P103fs
ESCA	TCGA-2H-A9GK-01	TMEM196	ENST00000433641.1	chr7	19761475:19761757:19763902:19763974:19765136:19765391,	19763903	19763974	19763924	19763924	Frame_Shift_Del	G	-	p.P103fs
ESCA	TCGA-L7-A56G-01	TMEM254	ENST00000472622.1	chr10	81841596:81841700:81841900:81841973:81850552:81850694,	81841901	81841973	81841942	81841943	Frame_Shift_Ins	-	T	p.A79fs
ESCA	TCGA-L7-A56G-01	TMEM254	ENST00000463029.1,ENST00000372273.3,ENST00000467529.1,ENST00000372281.3,ENST00000483732.1,ENST00000450179.1	chr10	81841596:81841700:81841900:81841960:81850552:81850694,	81841901	81841960	81841942	81841943	Frame_Shift_Ins	-	T	p.A79fs
ESCA	TCGA-L5-A4OI-01	TMEM50A	ENST00000480937.1	chr1	25664813:25664947:25666964:25667070:25678116:25678145,25664813:25664947:25666964:25667070:25669451:25669564,	25666965	25667070	25667024	25667024	Frame_Shift_Del	G	-	p.E18fs
ESCA	TCGA-L5-A4OI-01	TMEM87B	ENST00000283206.4	chr2	112821738:112821830:112824512:112824644:112832488:112832539,	112824513	112824644	112824589	112824590	Frame_Shift_Ins	-	A	p.N134fs
ESCA	TCGA-L5-A8NN-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661352	40661353	Frame_Shift_Ins	-	A	p.N375fs
ESCA	TCGA-LN-A49W-01	TOMM7	ENST00000372879.4	chr7	22852785:22852804:22857030:22857167:22857618:22857667,	22857031	22857167	22857031	22857031	Frame_Shift_Del	T	-	p.T97fs
ESCA	TCGA-LN-A9FQ-01	TOMM7	ENST00000372879.4	chr7	22852785:22852804:22857030:22857167:22857618:22857667,	22857031	22857167	22857031	22857031	Frame_Shift_Del	T	-	p.T97fs
ESCA	TCGA-L5-A4OI-01	TOMM7	ENST00000372879.4	chr7	22852785:22852804:22857030:22857167:22857618:22857667,	22857031	22857167	22857031	22857032	Frame_Shift_Del	TT	-	p.K96fs
ESCA	TCGA-XP-A8T7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577062	7577062	Frame_Shift_Del	T	-	p.E294fs
ESCA	TCGA-L5-A4OR-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579377	7579378	Frame_Shift_Ins	-	GT	p.Q103fs
ESCA	TCGA-LN-A5U6-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579497	7579498	Frame_Shift_Del	GA	-	p.P64fs
ESCA	TCGA-2H-A9GK-01	TRIM26	ENST00000453195.1,ENST00000454678.2,ENST00000437089.1	chr6	30156943:30156976:30157194:30157310:30157789:30157812,	30157195	30157310	30157254	30157254	Frame_Shift_Del	T	-	p.K282fs
ESCA	TCGA-L5-A43J-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14474120:14474206:14477002:14477072:14479369:14479459,	14477003	14477072	14477004	14477004	Frame_Shift_Del	T	-	p.L2031fs
ESCA	TCGA-L5-A8NM-01	TTC5	ENST00000554157.1,ENST00000258821.3,ENST00000423949.2,ENST00000383029.3	chr14	20763470:20763685:20763866:20764013:20764548:20764605,	20763867	20764013	20763965	20763966	Frame_Shift_Del	GA	-	p.R249fs
ESCA	TCGA-L5-A4OH-01	TTLL12	ENST00000216129.6	chr22	43570504:43570621:43572325:43572402:43575624:43575758,	43572326	43572402	43572342	43572342	Frame_Shift_Del	G	-	p.H301fs
ESCA	TCGA-IC-A6RE-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606379	179606379	Frame_Shift_Del	T	-	p.T3690fs
ESCA	TCGA-JY-A6FG-01	TUBB	ENST00000435534.1	chr6	30688133:30688340:30690313:30690422:30690694:30690805,	30690314	30690422	30690400	30690401	Frame_Shift_Del	TG	-	p.Y50fs
ESCA	TCGA-2H-A9GF-01	TUBGCP6	ENST00000491449.1,ENST00000248846.5,ENST00000498611.1,ENST00000425018.1,ENST00000439308.2	chr22	50656916:50657049:50657131:50657326:50657496:50657638,	50657132	50657326	50657243	50657244	Frame_Shift_Ins	-	A	p.H1571fs
ESCA	TCGA-L5-A8NF-01	TXNDC11	ENST00000573174.1,ENST00000576969.1	chr16	11824500:11824630:11827837:11827935:11829872:11829986,11815432:11815526:11827837:11827935:11829872:11829986,	11827838	11827935	11827869	11827873	Frame_Shift_Del	AAAAG	-	p.F178fs
ESCA	TCGA-LN-A7HZ-01	UBAC2	ENST00000403766.3	chr13	99853145:99853193:99890680:99890808:99896085:99896205,	99890681	99890808	99890703	99890703	Frame_Shift_Del	C	-	p.F61fs
ESCA	TCGA-L5-A8NM-01	UBE3C	ENST00000348165.5	chr7	156961741:156961816:156962997:156963144:156967612:156967728,	156962998	156963144	156963108	156963109	Frame_Shift_Ins	-	T	p.Y104fs
ESCA	TCGA-L5-A8NM-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103307863:103308010:103309120:103309212:103309685:103309834,	103309121	103309212	103309203	103309204	Frame_Shift_Ins	-	A	p.E1194fs
ESCA	TCGA-L5-A8NM-01	UGDH	ENST00000501493.2,ENST00000316423.6,ENST00000506179.1,ENST00000507089.1	chr4	39501530:39501873:39505494:39505605:39506036:39506128,	39505495	39505605	39505575	39505575	Frame_Shift_Del	T	-	p.M432fs
ESCA	TCGA-LN-A9FR-01	UNC5B	ENST00000373192.4,ENST00000335350.6	chr10	73055567:73055717:73056334:73056499:73057665:73057847,	73056335	73056499	73056419	73056419	Frame_Shift_Del	A	-	p.T804fs
ESCA	TCGA-L5-A4OI-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.E267fs
ESCA	TCGA-L5-A43J-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.E267fs
ESCA	TCGA-2H-A9GR-01	UPK3B	ENST00000443097.2,ENST00000394849.1	chr7	76139931:76140054:76140219:76140369:76140973:76141199,	76140220	76140369	76140306	76140307	Frame_Shift_Del	TG	-	p.V114fs
ESCA	TCGA-L5-A4OI-01	USHBP1	ENST00000252597.3,ENST00000594190.1,ENST00000324554.5	chr19	17373637:17373799:17374810:17374959:17375054:17375156,	17374811	17374959	17374897	17374898	Frame_Shift_Ins	-	T	p.P40fs
ESCA	TCGA-L5-A43J-01	USP35	ENST00000530546.1,ENST00000529308.1,ENST00000526425.1,ENST00000441408.2,ENST00000528910.1	chr11	77911178:77911280:77911695:77911854:77916887:77917081,	77911696	77911854	77911710	77911710	Frame_Shift_Del	C	-	p.M354fs
ESCA	TCGA-LN-A49N-01	USP48	ENST00000529637.1	chr1	22032959:22033082:22033236:22033400:22041881:22041950,	22033237	22033400	22033385	22033386	Frame_Shift_Ins	-	A	p.S659fs
ESCA	TCGA-L5-A4OI-01	USP48	ENST00000529637.1	chr1	22032959:22033082:22033236:22033400:22041881:22041950,	22033237	22033400	22033386	22033387	Frame_Shift_Del	AA	-	p.S659fs
ESCA	TCGA-Z6-A9VB-01	USP8	ENST00000433963.1,ENST00000396444.3,ENST00000307179.4	chr15	50769472:50769696:50773677:50774262:50781997:50782078,50769472:50769696:50773677:50774262:50776471:50776558,	50773678	50774262	50774176	50774176	Frame_Shift_Del	A	-	p.R574fs
ESCA	TCGA-L7-A6VZ-01	UTY	ENST00000538878.1,ENST00000331397.4,ENST00000382896.4,ENST00000540140.1,ENST00000362096.4,ENST00000545955.1,ENST00000329134.5	chrY	15438100:15438230:15447442:15448215:15466882:15467278,	15447443	15448215	15448130	15448130	Frame_Shift_Del	T	-	p.Q664fs
ESCA	TCGA-L5-A8NH-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100533126:100533238:100568677:100568881:100587885:100588012,	100568678	100568881	100568859	100568860	Frame_Shift_Ins	-	T	p.E1669fs
ESCA	TCGA-L5-A4ON-01	WASF3	ENST00000335327.5	chr13	27246008:27246126:27250685:27250861:27255190:27255457,	27250686	27250861	27250861	27250862	Frame_Shift_Ins	-	GT	p.S240fs
ESCA	TCGA-L5-A4OI-01	WDR41	ENST00000515253.1,ENST00000507029.1,ENST00000296679.4,ENST00000502528.1,ENST00000414719.2	chr5	76728717:76729112:76732085:76732219:76733160:76733249,	76732086	76732219	76732211	76732212	Frame_Shift_Ins	-	A	p.N367fs
ESCA	TCGA-L5-A8NM-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134232957	134232957	Frame_Shift_Del	C	-	p.P163fs
ESCA	TCGA-JY-A6FA-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939795:40939917:40940147:40940206:40940307:40940413,	40940148	40940206	40940199	40940199	Frame_Shift_Del	G	-	p.D640fs
ESCA	TCGA-L5-A8NM-01	WWP2	ENST00000359154.2,ENST00000570104.1,ENST00000544162.1,ENST00000448661.1,ENST00000356003.2,ENST00000569174.1,ENST00000542271.1	chr16	69905706:69905834:69921941:69922152:69942663:69942753,	69921942	69922152	69921970	69921971	Frame_Shift_Ins	-	C	p.E245fs
ESCA	TCGA-L5-A8NF-01	XRRA1	ENST00000525407.1	chr11	74647928:74648113:74651829:74651927:74656062:74656130,74647928:74648113:74651829:74651927:74659972:74660065,	74651830	74651927	74651896	74651896	Frame_Shift_Del	C	-	p.D10fs
ESCA	TCGA-JY-A6FA-01	YEATS2	ENST00000305135.5	chr3	183469860:183470041:183471913:183472153:183474315:183474477,	183471914	183472153	183472028	183472029	Frame_Shift_Ins	-	T	p.G423fs
ESCA	TCGA-JY-A6F8-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29070455	29070456	Frame_Shift_Del	CA	-	p.H559fs
ESCA	TCGA-L5-A4OI-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728643	100728644	Frame_Shift_Ins	-	A	p.D231fs
ESCA	TCGA-VR-AA7B-01	ZC3H13	ENST00000378921.2,ENST00000242848.4	chr13	46533617:46533781:46537976:46538177:46539414:46539564,	46537977	46538177	46538007	46538010	Frame_Shift_Del	TTTC	-	p.E1547fs
ESCA	TCGA-L5-A43J-01	ZFR	ENST00000265069.8	chr5	32403210:32403502:32404010:32404202:32406878:32407126,	32404011	32404202	32404161	32404161	Frame_Shift_Del	T	-	p.E359fs
ESCA	TCGA-L5-A8NM-01	ZMPSTE24	ENST00000372759.3	chr1	40751596:40751701:40756525:40756669:40758116:40758293,	40756526	40756669	40756543	40756543	Frame_Shift_Del	T	-	p.L362fs
ESCA	TCGA-V5-AASX-01	ZMYM2	ENST00000382871.2,ENST00000382874.2,ENST00000382869.3	chr13	20580513:20580726:20593686:20593758:20600751:20600902,	20593687	20593758	20593738	20593741	Frame_Shift_Del	TCTT	-	p.F523fs
ESCA	TCGA-L5-A8NM-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470303	70470303	Frame_Shift_Del	T	-	p.K353fs
ESCA	TCGA-2H-A9GR-01	ZNF106	ENST00000565611.1	chr15	42738823:42738856:42740269:42740903:42758250:42758312,42738823:42738856:42740269:42740903:42749414:42749711,	42740270	42740903	42740536	42740536	Frame_Shift_Del	T	-	p.R934fs
ESCA	TCGA-L5-A8NM-01	ZNF541	ENST00000391901.3	chr19	48036165:48036229:48041398:48041696:48043432:48043592,48036165:48036229:48041398:48041696:48042961:48043135,	48041399	48041696	48041514	48041514	Frame_Shift_Del	G	-	p.Y1013fs
ESCA	TCGA-L5-A8NM-01	ZNF541	ENST00000314121.4	chr19	48036165:48036229:48041398:48041753:48042961:48043135,	48041399	48041753	48041514	48041514	Frame_Shift_Del	G	-	p.Y1013fs
ESCA	TCGA-VR-A8ET-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967246	64967247	Frame_Shift_Ins	-	A	p.K734fs
ESCA	TCGA-L5-A4OI-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967247	64967247	Frame_Shift_Del	A	-	p.K734fs
ESCA	TCGA-L5-A4OI-01	ZNF839	ENST00000262236.5,ENST00000442396.2,ENST00000559185.1,ENST00000559155.1,ENST00000558490.1,ENST00000558850.1,ENST00000561251.1,ENST00000560568.1	chr14	102800890:102800983:102802025:102802175:102805152:102805167,	102802026	102802175	102802052	102802052	Frame_Shift_Del	T	-	p.F514fs
ESCA	TCGA-LN-A8I1-01	ZWILCH	ENST00000446801.2,ENST00000564179.1,ENST00000307897.5,ENST00000535141.2,ENST00000565627.1	chr15	66807863:66807982:66811216:66811416:66812927:66812995,	66811217	66811416	66811367	66811370	Frame_Shift_Del	AACA	-	p.N159fs
ESCA	TCGA-L5-A4OI-01	ZYG11A	ENST00000371528.1	chr1	53320136:53320302:53322669:53323421:53326402:53326519,	53322670	53323421	53322739	53322739	Frame_Shift_Del	A	-	p.A111fs
GBM	TCGA-02-0047-01	ZNF280D	ENST00000267807.7,ENST00000560002.1,ENST00000396245.1,ENST00000559237.1,ENST00000558002.1,ENST00000559000.1	chr15	56985295:56985413:56993130:56993270:56993370:56993436,	56993131	56993270	56993158	56993158	Frame_Shift_Del	A	-	p.S118fs
GBM	TCGA-02-0047-01	SPACA3	ENST00000269053.3	chr17	31302844:31302962:31322426:31322735:31323860:31324019,31318886:31318990:31322426:31322735:31323860:31324019,	31322427	31322735	31322643	31322643	Frame_Shift_Del	C	-	p.S84fs
GBM	TCGA-02-2470-01	NFIX	ENST00000587260.1,ENST00000397661.2,ENST00000587760.1	chr19	13186348:13186485:13192493:13192669:13201112:13201204,13189426:13189549:13192493:13192669:13201112:13201204,	13192494	13192669	13192662	13192662	Frame_Shift_Del	C	-	p.T424fs
GBM	TCGA-02-2470-01	SH2D3C	ENST00000373274.3,ENST00000429553.1,ENST00000314830.8,ENST00000373277.4,ENST00000373276.3,ENST00000420366.1	chr9	130500597:130501200:130501960:130502167:130502536:130502648,	130501961	130502167	130502108	130502108	Frame_Shift_Del	C	-	p.E754fs
GBM	TCGA-02-2485-01	ARHGEF25	ENST00000477314.1	chr12	58010165:58010278:58010566:58011071:58013093:58013162,	58010567	58011071	58010639	58010640	Frame_Shift_Ins	-	A	p.Q569fs
GBM	TCGA-06-0124-01	VCAM1	ENST00000347652.2	chr1	101190179:101190446:101196753:101197074:101197973:101198240,	101196754	101197074	101197065	101197066	Frame_Shift_Del	TA	-	p.Y506fs
GBM	TCGA-06-0126-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331129	85331142	Frame_Shift_Del	ACTTGTATGCGGAG	-	p.S221fs
GBM	TCGA-06-0126-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34130001	34130002	Frame_Shift_Ins	-	A	p.S3940fs
GBM	TCGA-06-0128-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576910	7576910	Frame_Shift_Del	G	-	p.T312fs
GBM	TCGA-06-0129-01	ITGB1BP1	ENST00000490426.1,ENST00000464228.1,ENST00000360635.3,ENST00000355346.4,ENST00000460720.1	chr2	9546942:9547034:9547577:9547727:9548241:9548334,	9547578	9547727	9547680	9547681	Frame_Shift_Del	AC	-	p.C143fs
GBM	TCGA-06-0129-01	CEP250	ENST00000342580.4,ENST00000397527.1	chr20	34082350:34082484:34084405:34084544:34085547:34085896,	34084406	34084544	34084435	34084436	Frame_Shift_Del	AG	-	p.Q1066fs
GBM	TCGA-06-0129-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938089	76938092	Frame_Shift_Del	TCTC	-	p.E886fs
GBM	TCGA-06-0132-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114069362	114069362	Frame_Shift_Del	G	-	p.P521fs
GBM	TCGA-06-0141-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
GBM	TCGA-06-0145-01	GPR143	ENST00000447366.1,ENST00000380929.2,ENST00000467482.1	chrX	9709377:9709495:9711604:9711713:9714083:9714193,	9711605	9711713	9711643	9711643	Frame_Shift_Del	C	-	p.K243fs
GBM	TCGA-06-0151-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320707	46320708	Frame_Shift_Del	TC	-	p.E926fs
GBM	TCGA-06-0157-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690819	89690820	Frame_Shift_Del	TA	-	p.Y76fs
GBM	TCGA-06-0166-01	AP3M2	ENST00000521280.1,ENST00000396926.3,ENST00000174653.3,ENST00000518421.1	chr8	42022944:42023078:42024681:42024889:42025183:42025273,	42024682	42024889	42024775	42024776	Frame_Shift_Ins	-	GT	p.Q299fs
GBM	TCGA-06-0174-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.R707fs
GBM	TCGA-06-0174-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301237	18301238	Frame_Shift_Ins	-	C	p.E1397fs
GBM	TCGA-06-0184-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000584328.1,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29665042:29665157:29665721:29665823:29667522:29667663,	29665722	29665823	29665808	29665808	Frame_Shift_Del	G	-	p.Q2302fs
GBM	TCGA-06-0185-01	TRAPPC10	ENST00000291574.4,ENST00000380221.3,ENST00000422875.1	chr21	45457672:45457808:45472160:45472357:45475578:45475774,	45472161	45472357	45472274	45472275	Frame_Shift_Ins	-	A	p.K133fs
GBM	TCGA-06-0190-02	ZNRF1	ENST00000320619.6,ENST00000564320.1,ENST00000335325.4	chr16	75138681:75138787:75140379:75140469:75141630:75141672,	75140380	75140469	75140419	75140419	Frame_Shift_Del	G	-	p.P273fs
GBM	TCGA-06-0190-02	HAT1	ENST00000457761.2,ENST00000477327.1,ENST00000412731.1,ENST00000392584.1,ENST00000494601.1,ENST00000264108.4	chr2	172823363:172823470:172841095:172841247:172844159:172844276,	172841096	172841247	172841151	172841157	Frame_Shift_Del	TTGTCAA	-	p.L293fs
GBM	TCGA-06-0192-01	PCM1	ENST00000519253.1,ENST00000522275.1,ENST00000327578.8,ENST00000325083.8,ENST00000519802.1	chr8	17871496:17871545:17872092:17872349:17882869:17882962,	17872093	17872349	17872225	17872226	Frame_Shift_Ins	-	A	p.L1945fs
GBM	TCGA-06-0216-01	RPL5	ENST00000370321.3,ENST00000315741.5	chr1	93300335:93300470:93301746:93301949:93303012:93303026,	93301747	93301949	93301897	93301898	Frame_Shift_Ins	-	T	p.V159fs
GBM	TCGA-06-0216-01	CD22	ENST00000270311.6,ENST00000598815.1,ENST00000419549.2,ENST00000085219.5,ENST00000536635.2,ENST00000594250.1,ENST00000341773.6,ENST00000544992.2,ENST00000601769.1	chr19	35832003:35832041:35832245:35832509:35832604:35832627,	35832246	35832509	35832284	35832285	Frame_Shift_Ins	-	T	p.L516fs
GBM	TCGA-06-0237-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174270	105174271	Frame_Shift_Ins	-	G	p.R556fs
GBM	TCGA-06-0238-01	UQCRQ	ENST00000378667.1	chr5	132202348:132202383:132202560:132202727:132203179:132203375,	132202561	132202727	132202700	132202701	Frame_Shift_Ins	-	G	p.R43fs
GBM	TCGA-06-0241-01	NR1I3	ENST00000367982.4,ENST00000515621.1,ENST00000367983.4,ENST00000512372.1,ENST00000428574.2,ENST00000504010.1,ENST00000367980.2,ENST00000505005.1,ENST00000367981.3,ENST00000412844.2,ENST00000508740.1,ENST00000515452.1,ENST00000442691.2,ENST00000367979.2,ENST00000506209.1,ENST00000511676.1,ENST00000506018.1,ENST00000367984.4,ENST00000367985.3,ENST00000437437.2	chr1	161202596:161202736:161202958:161203128:161205636:161205767,	161202959	161203128	161202999	161203000	Frame_Shift_Ins	-	G	p.R123fs
GBM	TCGA-06-0644-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711988	89711989	Frame_Shift_Del	TA	-	p.T202fs
GBM	TCGA-06-0646-01	CDKN2C	ENST00000396148.1,ENST00000262662.1	chr1	51434366:51435571:51436029:51436169:51439564:51440230,	51436030	51436169	51436083	51436083	Frame_Shift_Del	A	-	p.R15fs
GBM	TCGA-06-0648-01	SPIRE2	ENST00000566337.1,ENST00000378247.3,ENST00000393062.2	chr16	89911729:89911773:89916711:89917068:89920693:89920774,	89916712	89917068	89916966	89916966	Frame_Shift_Del	C	-	p.D181fs
GBM	TCGA-06-0648-01	ABCF1	ENST00000475993.1,ENST00000376545.3,ENST00000326195.8	chr6	30551581:30551667:30551968:30552108:30552194:30552343,	30551969	30552108	30552069	30552069	Frame_Shift_Del	G	-	p.L401fs
GBM	TCGA-06-0649-01	KPNA6	ENST00000471599.1	chr1	32573658:32573735:32620188:32620322:32622453:32622528,	32620189	32620322	32620313	32620317	Frame_Shift_Del	AGAGC	-	p.R48fs
GBM	TCGA-06-0649-01	KLRG1	ENST00000544226.1	chr12	9102720:9102832:9144801:9144906:9161570:9161671,	9144802	9144906	9144889	9144889	Frame_Shift_Del	A	-	p.Q57fs
GBM	TCGA-06-0649-01	KIAA2026	ENST00000540714.1	chr9	5929043:5929159:5944870:5944960:5954015:5954095,5933750:5933881:5944870:5944960:5954015:5954095,	5944871	5944960	5944873	5944874	Frame_Shift_Ins	-	T	p.K793fs
GBM	TCGA-06-0686-01	TRPV6	ENST00000359396.3,ENST00000463646.1,ENST00000436401.1,ENST00000487077.1	chr7	142571850:142571895:142572243:142572409:142572656:142572733,	142572244	142572409	142572331	142572331	Frame_Shift_Del	G	-	p.S455fs
GBM	TCGA-06-0743-01	AARS2	ENST00000244571.4	chr6	44270538:44270647:44270802:44270912:44271022:44271160,	44270803	44270912	44270876	44270876	Frame_Shift_Del	C	-	p.V728fs
GBM	TCGA-06-0749-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257784	6257785	Frame_Shift_Ins	-	T	p.K15fs
GBM	TCGA-06-0749-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123202413:123202506:123204998:123205173:123210181:123210321,	123204999	123205173	123205046	123205047	Frame_Shift_Del	TA	-	p.I802fs
GBM	TCGA-06-0876-01	CLSPN	ENST00000520551.1,ENST00000373220.3,ENST00000318121.3,ENST00000251195.5	chr1	36228004:36228082:36228760:36228922:36229866:36230315,	36228761	36228922	36228771	36228775	Frame_Shift_Del	TTTAC	-	p.V244fs
GBM	TCGA-06-0876-01	TTC13	ENST00000366662.4,ENST00000414259.1,ENST00000366661.4,ENST00000486879.2	chr1	231057166:231057250:231059586:231059679:231060586:231060609,	231059587	231059679	231059600	231059600	Frame_Shift_Del	T	-	p.I601fs
GBM	TCGA-06-0877-01	MBNL1	ENST00000324210.5,ENST00000282486.6,ENST00000282488.7,ENST00000355460.2	chr3	151986751:151986881:152017193:152018156:152132729:152132897,	152017194	152018156	152018103	152018103	Frame_Shift_Del	A	-	p.K41fs
GBM	TCGA-06-0882-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752166	8752166	Frame_Shift_Del	C	-	p.G224fs
GBM	TCGA-06-2557-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971124	21971125	Frame_Shift_Del	GA	-	p.L78fs
GBM	TCGA-06-2557-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971124	21971125	Frame_Shift_Del	GA	-	p.L78fs
GBM	TCGA-06-2558-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93142714:93142775:93159358:93159456:93159855:93159945,	93159359	93159456	93159365	93159366	Frame_Shift_Ins	-	T	p.M408fs
GBM	TCGA-06-2559-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042090	134042090	Frame_Shift_Del	G	-	p.W2354fs
GBM	TCGA-06-2562-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541476	29541476	Frame_Shift_Del	C	-	p.T467fs
GBM	TCGA-06-2564-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541182	187541183	Frame_Shift_Ins	-	A	p.F2186fs
GBM	TCGA-06-2565-01	SEMA3E	ENST00000427262.1,ENST00000307792.3	chr7	83031947:83032092:83034765:83034835:83035260:83035375,	83034766	83034835	83034830	83034830	Frame_Shift_Del	C	-	p.V312fs
GBM	TCGA-06-5412-01	SND1	ENST00000461056.1,ENST00000468621.1,ENST00000354725.3	chr7	127326666:127326816:127334881:127335002:127338928:127338991,	127334882	127335002	127334947	127334948	Frame_Shift_Ins	-	A	p.T98fs
GBM	TCGA-06-5413-01	RPL5	ENST00000470843.1	chr1	93297654:93297674:93298945:93299015:93299101:93299217,	93298946	93299015	93298955	93298955	Frame_Shift_Del	A	-	p.K5fs
GBM	TCGA-06-5413-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170384393:170384546:170398274:170398503:170398582:170398648,	170398275	170398503	170398275	170398275	Frame_Shift_Del	T	-	p.R812_splice
GBM	TCGA-06-5414-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57523349:57523455:57524488:57524628:57524909:57525054,	57524489	57524628	57524624	57524624	Frame_Shift_Del	G	-	p.R274fs
GBM	TCGA-06-5414-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467047	58467047	Frame_Shift_Del	T	-	p.M788fs
GBM	TCGA-06-5415-01	ZNF507	ENST00000311921.4,ENST00000544431.1,ENST00000355898.5	chr19	32843734:32845863:32847521:32847639:32851409:32851524,	32847522	32847639	32847587	32847609	Frame_Shift_Del	TAATGAGCCAAGAATTTCCAGTG	-	p.S731fs
GBM	TCGA-06-5415-01	STAG1	ENST00000465961.1,ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136067999:136068205:136076561:136076690:136077989:136078031,	136076562	136076690	136076625	136076625	Frame_Shift_Del	A	-	p.L1001fs
GBM	TCGA-06-5417-01	EPAS1	ENST00000483692.1,ENST00000263734.3	chr2	46602828:46602976:46603677:46603892:46605032:46605226,	46603678	46603892	46603736	46603736	Frame_Shift_Del	C	-	p.P365fs
GBM	TCGA-06-5417-01	WWC2	ENST00000403733.3,ENST00000427431.1,ENST00000448232.2,ENST00000504005.1,ENST00000438543.1,ENST00000513834.1,ENST00000508747.1	chr4	184207119:184207212:184210545:184210788:184233493:184233621,	184210546	184210788	184210574	184210574	Frame_Shift_Del	C	-	p.T1057fs
GBM	TCGA-06-5418-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171884854:171884915:171902683:171902872:171906323:171906460,	171902684	171902872	171902709	171902710	Frame_Shift_Ins	-	GG	p.P402fs
GBM	TCGA-06-5418-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
GBM	TCGA-06-5418-01	IL3RA	ENST00000331035.4	chrX	1460658:1460722:1464208:1464327:1467323:1467438,	1464209	1464327	1464293	1464293	Frame_Shift_Del	T	-	p.I50fs
GBM	TCGA-06-5859-01	KLHL12	ENST00000435533.3,ENST00000367261.3	chr1	202861532:202861787:202862366:202862553:202863311:202863410,	202862367	202862553	202862387	202862387	Frame_Shift_Del	C	-	p.G520fs
GBM	TCGA-06-5859-01	NPRL2	ENST00000433999.1	chr3	50387095:50387264:50387343:50387453:50388005:50388135,	50387344	50387453	50387415	50387416	Frame_Shift_Del	TG	-	p.T39fs
GBM	TCGA-06-5859-01	NPRL2	ENST00000232501.3,ENST00000469839.1	chr3	50387095:50387264:50387361:50387453:50388005:50388135,	50387362	50387453	50387415	50387416	Frame_Shift_Del	TG	-	p.T39fs
GBM	TCGA-06-5859-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
GBM	TCGA-06-6391-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
GBM	TCGA-12-0616-01	DNAH1	ENST00000486752.1,ENST00000420323.2	chr3	52409255:52409429:52409970:52410009:52412617:52412796,	52409971	52410009	52409985	52409986	Frame_Shift_Ins	-	A	p.E2392fs
GBM	TCGA-12-0619-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
GBM	TCGA-12-0619-01	TTYH1	ENST00000376530.3,ENST00000487134.1	chr19	54947007:54947053:54947270:54947351:54947512:54947897,	54947271	54947351	54947301	54947304	Frame_Shift_Del	TCTA	-	p.R433fs
GBM	TCGA-12-0619-01	TTYH1	ENST00000301194.4,ENST00000489425.1	chr19	54947007:54947053:54947267:54947351:54947512:54947897,	54947268	54947351	54947301	54947304	Frame_Shift_Del	TCTA	-	p.R433fs
GBM	TCGA-12-0619-01	GNB4	ENST00000232564.3,ENST00000468623.1,ENST00000497513.1	chr3	179134308:179134344:179137186:179137293:179138676:179138715,	179137187	179137293	179137188	179137189	Frame_Shift_Ins	-	G	p.R68_splice
GBM	TCGA-12-0688-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539904	120539904	Frame_Shift_Del	C	-	p.G156fs
GBM	TCGA-12-0688-01	PTPN2	ENST00000587703.1,ENST00000591115.1,ENST00000327283.3	chr18	12785683:12785843:12794382:12794484:12801968:12802150,	12794383	12794484	12794472	12794472	Frame_Shift_Del	T	-	p.K351fs
GBM	TCGA-12-0692-01	TRMT6	ENST00000473131.1,ENST00000466974.1,ENST00000203001.2	chr20	5924807:5924899:5925450:5925560:5927051:5927174,	5925451	5925560	5925484	5925485	Frame_Shift_Del	TA	-	p.I111fs
GBM	TCGA-12-0692-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123171376:123171473:123176418:123176495:123179013:123179058,	123176419	123176495	123176479	123176479	Frame_Shift_Del	C	-	p.T149fs
GBM	TCGA-12-0692-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961585	135961586	Frame_Shift_Ins	-	T	p.M1fs
GBM	TCGA-12-0821-01	CD300A	ENST00000582319.1	chr17	72462814:72462882:72469674:72470013:72470670:72470824,	72469675	72470013	72469708	72469709	Frame_Shift_Ins	-	G	p.A25fs
GBM	TCGA-12-0821-01	FLOT1	ENST00000456573.2,ENST00000487376.1,ENST00000376389.3	chr6	30695825:30695922:30697798:30697963:30698204:30698342,	30697799	30697963	30697825	30697826	Frame_Shift_Del	TT	-	p.E409fs
GBM	TCGA-12-1597-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717704	89717704	Frame_Shift_Del	C	-	p.F243fs
GBM	TCGA-12-3650-01	KIF19	ENST00000359939.6,ENST00000547389.1,ENST00000551294.1,ENST00000389916.4	chr17	72340899:72341094:72342516:72342663:72343915:72344038,	72342517	72342663	72342551	72342551	Frame_Shift_Del	C	-	p.A271fs
GBM	TCGA-12-5295-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65349460	65349460	Frame_Shift_Del	A	-	p.G439fs
GBM	TCGA-12-5295-01	EHBP1L1	ENST00000533237.1	chr11	65348688:65348844:65349009:65349487:65351711:65351869,	65349010	65349487	65349460	65349460	Frame_Shift_Del	A	-	p.G439fs
GBM	TCGA-12-5295-01	UBAP1	ENST00000540348.1,ENST00000297661.4,ENST00000379186.4,ENST00000536252.1,ENST00000359544.2	chr9	34220905:34220946:34234213:34234338:34241182:34241575,	34234214	34234338	34234331	34234331	Frame_Shift_Del	A	-	p.E51fs
GBM	TCGA-12-5301-01	RFX1	ENST00000589760.1,ENST00000589239.1	chr19	14094297:14094407:14104336:14104707:14116914:14117074,	14104337	14104707	14104590	14104591	Frame_Shift_Ins	-	G	p.P22fs
GBM	TCGA-12-5301-01	FBLN1	ENST00000348697.2,ENST00000340923.5,ENST00000327858.6,ENST00000442170.2,ENST00000262722.7,ENST00000402984.3	chr22	45942964:45943084:45944492:45944624:45946371:45946495,	45944493	45944624	45944523	45944524	Frame_Shift_Ins	-	CCAC	p.G529fs
GBM	TCGA-14-0781-01	GCNT2	ENST00000495262.1	chr6	10527706:10527893:10528863:10530069:10621583:10621655,	10528864	10530069	10529185	10529186	Frame_Shift_Del	TT	-	p.L14fs
GBM	TCGA-14-0786-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320707	46320708	Frame_Shift_Del	TC	-	p.E926fs
GBM	TCGA-14-0786-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113353098	113353098	Frame_Shift_Del	C	-	p.P799fs
GBM	TCGA-14-0789-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123171376:123171473:123176418:123176495:123179013:123179058,	123176419	123176495	123176470	123176471	Frame_Shift_Ins	-	A	p.R146fs
GBM	TCGA-14-0813-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578211	7578214	Frame_Shift_Del	CGAA	-	p.F212fs
GBM	TCGA-14-0813-01	KPNB1	ENST00000290158.4,ENST00000577918.1,ENST00000577875.1,ENST00000535458.2,ENST00000540627.1	chr17	45730059:45730242:45734225:45734426:45735873:45736007,	45734226	45734426	45734349	45734349	Frame_Shift_Del	A	-	p.N136fs
GBM	TCGA-14-0817-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578264	7578268	Frame_Shift_Del	GATAA	-	p.L194fs
GBM	TCGA-14-0817-01	USP20	ENST00000358355.1,ENST00000372429.3,ENST00000315480.4	chr9	132623821:132623891:132625464:132625578:132627581:132627660,	132625465	132625578	132625554	132625555	Frame_Shift_Del	TC	-	p.V196fs
GBM	TCGA-14-0871-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577035	7577036	Frame_Shift_Ins	-	G	p.P301fs
GBM	TCGA-14-0871-01	MARCH6	ENST00000511802.1,ENST00000449913.2,ENST00000510792.1,ENST00000503788.1,ENST00000274140.5	chr5	10417381:10417516:10423846:10423936:10426501:10426634,	10423847	10423936	10423856	10423857	Frame_Shift_Ins	-	T	p.L765fs
GBM	TCGA-14-1034-02	TOP3A	ENST00000321105.5,ENST00000580095.1	chr17	18208425:18208534:18210204:18210280:18211664:18211738,	18210205	18210280	18210245	18210246	Frame_Shift_Del	TC	-	p.E117fs
GBM	TCGA-14-1034-02	HOOK3	ENST00000527306.1,ENST00000307602.4	chr8	42837769:42837839:42841797:42841938:42852692:42852780,	42841798	42841938	42841865	42841866	Frame_Shift_Ins	-	A	p.E487fs
GBM	TCGA-14-1043-01	FXR1	ENST00000357559.4,ENST00000445140.2,ENST00000472339.1,ENST00000479176.1	chr3	180630472:180630524:180651121:180651174:180665652:180665724,180630472:180630524:180651121:180651174:180652925:180652984,	180651122	180651174	180651171	180651172	Frame_Shift_Del	AT	-	p.N34fs
GBM	TCGA-14-1395-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711928	89711928	Frame_Shift_Del	A	-	p.L182fs
GBM	TCGA-14-1450-01	BEST3	ENST00000548658.1,ENST00000331471.4,ENST00000330891.5,ENST00000393365.1	chr12	70088149:70088244:70091426:70091593:70092984:70093065,	70091427	70091593	70091534	70091534	Frame_Shift_Del	A	-	p.F15fs
GBM	TCGA-14-1450-01	TJP1	ENST00000356107.6,ENST00000346128.6	chr15	30011096:30011342:30011980:30012220:30012561:30012912,	30011981	30012220	30012191	30012192	Frame_Shift_Ins	-	T	p.Y931fs
GBM	TCGA-14-1456-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.K41fs
GBM	TCGA-14-1825-01	SLC35A2	ENST00000247138.5	chrX	48760537:48760742:48762022:48762759:48763668:48763820,	48762023	48762759	48762551	48762552	Frame_Shift_Del	GA	-	p.S240fs
GBM	TCGA-14-3476-01	TRIM21	ENST00000254436.7	chr11	4408197:4408220:4409529:4409760:4410883:4410979,	4409530	4409760	4409705	4409705	Frame_Shift_Del	T	-	p.N187fs
GBM	TCGA-14-4157-01	ANKLE2	ENST00000337516.5,ENST00000357997.5	chr12	133324723:133324917:133327228:133327435:133331260:133331719,	133327229	133327435	133327271	133327272	Frame_Shift_Del	GA	-	p.S268fs
GBM	TCGA-14-4157-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937111	76937111	Frame_Shift_Del	G	-	p.Q1213fs
GBM	TCGA-15-1444-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277611	186277614	Frame_Shift_Del	AGAA	-	p.T920fs
GBM	TCGA-16-1045-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000481227.2,ENST00000313382.9,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144857639:144857728:144863317:144863442:144864134:144864324,144859890:144859998:144863317:144863442:144864134:144864324,	144863318	144863442	144863324	144863324	Frame_Shift_Del	G	-	p.L2027fs
GBM	TCGA-19-1790-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91660825:91660918:91667732:91668086:91669987:91670212,	91667733	91668086	91668077	91668078	Frame_Shift_Ins	-	GA	p.V1561fs
GBM	TCGA-19-1790-01	TRPS1	ENST00000519076.1,ENST00000520276.1,ENST00000220888.5,ENST00000395715.3	chr8	116430557:116430680:116599227:116599831:116616099:116616277,	116599228	116599831	116599737	116599737	Frame_Shift_Del	C	-	p.E731fs
GBM	TCGA-19-2620-01	MED23	ENST00000354577.4,ENST00000368068.3,ENST00000540546.1,ENST00000368053.4,ENST00000539158.1,ENST00000403834.3,ENST00000368060.3,ENST00000368058.1	chr6	131927618:131927764:131929067:131929211:131931185:131931227,	131929068	131929211	131929144	131929144	Frame_Shift_Del	C	-	p.G382fs
GBM	TCGA-19-2624-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652558	55652559	Frame_Shift_Ins	-	C	p.G471fs
GBM	TCGA-19-2625-01	CLCA1	ENST00000394711.1,ENST00000234701.3	chr1	86947887:86948065:86951025:86951244:86952208:86952265,	86951026	86951244	86951220	86951220	Frame_Shift_Del	C	-	p.V310fs
GBM	TCGA-19-2629-01	TMIGD2	ENST00000301272.2	chr19	4294771:4294813:4297982:4298342:4302336:4302382,	4297983	4298342	4298041	4298042	Frame_Shift_Del	TA	-	p.V116fs
GBM	TCGA-19-2629-01	HSDL2	ENST00000467434.1	chr9	115167912:115168002:115181139:115181238:115200710:115200905,115179120:115179224:115181139:115181238:115200710:115200905,115171186:115171301:115181139:115181238:115200710:115200905,	115181140	115181238	115181194	115181194	Frame_Shift_Del	A	-	p.E185fs
GBM	TCGA-19-2629-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939674	76939675	Frame_Shift_Del	TT	-	p.K358fs
GBM	TCGA-19-2631-01	RBM48	ENST00000265732.5	chr7	92161717:92161863:92163715:92164284:92166164:92166848,	92163716	92164284	92163996	92163997	Frame_Shift_Del	TT	-	p.S243fs
GBM	TCGA-19-5947-01	SCYL3	ENST00000367771.6,ENST00000367770.1,ENST00000470238.1,ENST00000367772.4,ENST00000423670.1	chr1	169831753:169831938:169833509:169833649:169836036:169836114,	169833510	169833649	169833511	169833511	Frame_Shift_Del	T	-	p.D319_splice
GBM	TCGA-19-5951-01	CCDC148	ENST00000409889.1	chr2	159197109:159197192:159214960:159215082:159312926:159313078,159201726:159201830:159214960:159215082:159312926:159313078,	159214961	159215082	159215014	159215015	Frame_Shift_Ins	-	T	p.Q31fs
GBM	TCGA-19-5951-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167473	Frame_Shift_Del	A	-	p.K73fs
GBM	TCGA-19-5952-01	APBB1IP	ENST00000376236.4	chr10	26849033:26849132:26849658:26849773:26851254:26851358,	26849659	26849773	26849669	26849672	Frame_Shift_Del	CTCT	-	p.T422fs
GBM	TCGA-19-5953-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087914	109087914	Frame_Shift_Del	T	-	p.V710fs
GBM	TCGA-19-5953-01	SLC22A16	ENST00000434949.1	chr6	110763603:110763978:110768075:110768193:110777740:110778006,110763603:110763978:110768075:110768193:110778102:110778220,	110768076	110768193	110768146	110768146	Frame_Shift_Del	A	-	p.L194fs
GBM	TCGA-19-5955-01	MYO3A	ENST00000265944.5,ENST00000543632.1	chr10	26312950:26313016:26315305:26315461:26355903:26356003,	26315306	26315461	26315330	26315330	Frame_Shift_Del	G	-	p.K274fs
GBM	TCGA-19-5959-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53590706:53590782:53591534:53591683:53592027:53592200,	53591535	53591683	53591568	53591568	Frame_Shift_Del	C	-	p.G2332fs
GBM	TCGA-26-1439-01	UGDH	ENST00000515021.1,ENST00000316423.6,ENST00000509391.1,ENST00000506179.1,ENST00000514106.1	chr4	39512434:39512481:39515702:39515804:39522970:39523095,	39515703	39515804	39515752	39515753	Frame_Shift_Ins	-	A	p.S72fs
GBM	TCGA-26-1439-01	UGDH	ENST00000503779.1,ENST00000510881.1	chr4	39512434:39512481:39515702:39515800:39522970:39523095,	39515703	39515800	39515752	39515753	Frame_Shift_Ins	-	A	p.S72fs
GBM	TCGA-26-1442-01	AK1	ENST00000373176.1,ENST00000223836.10,ENST00000373156.1,ENST00000413016.1	chr9	130630279:130630355:130630599:130630791:130634101:130634218,	130630600	130630791	130630690	130630691	Frame_Shift_Ins	-	T	p.N142fs
GBM	TCGA-26-1442-01	AK1	ENST00000550143.1	chr9	130630279:130630355:130630599:130630754:130634101:130634218,	130630600	130630754	130630690	130630691	Frame_Shift_Ins	-	T	p.N142fs
GBM	TCGA-26-5133-01	TMEM44	ENST00000381975.3	chr3	194309257:194309368:194325015:194325170:194331644:194331707,	194325016	194325170	194325157	194325157	Frame_Shift_Del	G	-	p.T392fs
GBM	TCGA-26-5133-01	TMEM44	ENST00000392432.2,ENST00000347147.4,ENST00000477651.1,ENST00000452358.1	chr3	194309257:194309368:194325015:194325174:194331644:194331707,	194325016	194325174	194325157	194325157	Frame_Shift_Del	G	-	p.T392fs
GBM	TCGA-26-5133-01	TMEM44	ENST00000429560.1	chr3	194309257:194309368:194325042:194325170:194331644:194331707,	194325043	194325170	194325157	194325157	Frame_Shift_Del	G	-	p.T392fs
GBM	TCGA-26-5139-01	RIC8B	ENST00000470628.2,ENST00000392839.2,ENST00000462949.1	chr12	107168523:107168607:107177774:107177822:107219503:107219598,107168523:107168607:107177774:107177822:107208473:107208648,	107177775	107177822	107177813	107177814	Frame_Shift_Ins	-	A	p.D41fs
GBM	TCGA-26-6174-01	NPHP3	ENST00000326682.8,ENST00000465756.1	chr3	132411497:132411662:132413670:132413809:132416103:132416206,	132413671	132413809	132413753	132413754	Frame_Shift_Ins	-	C	p.D743fs
GBM	TCGA-27-1831-01	WWC2	ENST00000403733.3,ENST00000378925.3,ENST00000448232.2,ENST00000438543.1,ENST00000513834.1	chr4	184161335:184161415:184166568:184166698:184169866:184170013,	184166569	184166698	184166575	184166576	Frame_Shift_Ins	-	A	p.D203fs
GBM	TCGA-27-1832-01	CNTNAP3	ENST00000297668.6,ENST00000358144.2	chr9	39088419:39088644:39099907:39100147:39102493:39102712,	39099908	39100147	39099958	39099959	Frame_Shift_Ins	-	C	p.V982fs
GBM	TCGA-27-1833-01	MAP4K2	ENST00000470088.1	chr11	64557865:64557934:64559380:64559894:64563744:64563862,	64559381	64559894	64559447	64559448	Frame_Shift_Ins	-	G	p.G675fs
GBM	TCGA-27-1833-01	PAM	ENST00000438793.3,ENST00000348126.2	chr5	102355493:102355547:102360834:102361038:102363885:102363926,102355493:102355547:102360834:102361038:102364590:102364814,102355493:102355547:102360834:102361038:102363888:102363942,	102360835	102361038	102360910	102360911	Frame_Shift_Del	AG	-	p.Q854fs
GBM	TCGA-27-1833-01	PAM	ENST00000504456.1	chr5	102355493:102355547:102360837:102361038:102363888:102363942,102355493:102355547:102360837:102361038:102363885:102363926,	102360838	102361038	102360910	102360911	Frame_Shift_Del	AG	-	p.Q854fs
GBM	TCGA-27-1836-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788096	17788097	Frame_Shift_Del	AA	-	p.L1091fs
GBM	TCGA-27-1837-01	TRAPPC10	ENST00000291574.4,ENST00000380221.3,ENST00000422875.1	chr21	45457672:45457808:45472160:45472357:45475578:45475774,	45472161	45472357	45472274	45472275	Frame_Shift_Ins	-	A	p.K133fs
GBM	TCGA-27-2518-01	TNRC6A	ENST00000491718.1,ENST00000315183.7,ENST00000567232.1,ENST00000395799.3,ENST00000450465.2	chr16	24805864:24806040:24807227:24807260:24808810:24808824,	24807228	24807260	24807240	24807240	Frame_Shift_Del	A	-	p.K1181fs
GBM	TCGA-27-2519-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577094	7577094	Frame_Shift_Del	G	-	p.R282fs
GBM	TCGA-27-2521-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577149	7577149	Frame_Shift_Del	A	-	p.N263fs
GBM	TCGA-27-2521-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795881	42795881	Frame_Shift_Del	C	-	p.A957fs
GBM	TCGA-27-2523-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52880880:52881048:52883127:52883299:52884024:52884157,	52883128	52883299	52883129	52883129	Frame_Shift_Del	T	-	p.K221_splice
GBM	TCGA-28-2502-01	DEPDC7	ENST00000311388.3,ENST00000241051.3	chr11	33047204:33047595:33049231:33049359:33050148:33050338,	33049232	33049359	33049298	33049299	Frame_Shift_Del	TC	-	p.N177fs
GBM	TCGA-28-2502-01	NF1	ENST00000487476.1,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29490203:29490394:29496908:29497015:29508439:29508507,	29496909	29497015	29496924	29496927	Frame_Shift_Del	TGTT	-	p.T165fs
GBM	TCGA-28-2509-01	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1,ENST00000452345.1	chr2	231327181:231327233:231328781:231328865:231331015:231331069,	231328782	231328865	231328786	231328786	Frame_Shift_Del	C	-	p.I354fs
GBM	TCGA-28-2513-01	REPS1	ENST00000409812.2,ENST00000367663.4,ENST00000445570.1,ENST00000415951.2,ENST00000529597.1	chr6	139242200:139242261:139251113:139251235:139262471:139262626,	139251114	139251235	139251126	139251126	Frame_Shift_Del	A	-	p.N415fs
GBM	TCGA-28-2513-01	REPS1	ENST00000483468.1	chr6	139242200:139242261:139247537:139251235:139262471:139262626,	139247538	139251235	139251126	139251126	Frame_Shift_Del	A	-	p.N415fs
GBM	TCGA-28-5207-01	MARS	ENST00000550449.1	chr12	57882801:57882892:57883049:57883341:57883678:57883754,	57883050	57883341	57883052	57883053	Frame_Shift_Ins	-	T	p.Y68fs
GBM	TCGA-28-5207-01	MARS	ENST00000551431.1	chr12	57882801:57882892:57883049:57883128:57883989:57883999,	57883050	57883128	57883052	57883053	Frame_Shift_Ins	-	T	p.Y68fs
GBM	TCGA-28-5207-01	QKI	ENST00000453779.2,ENST00000361758.4	chr6	163983013:163983101:163984451:163984751:163987752:163987827,163983013:163983101:163984451:163984751:163986977:163987827,	163984452	163984751	163984582	163984585	Frame_Shift_Del	CAGA	-	p.I255fs
GBM	TCGA-28-5207-01	QKI	ENST00000361195.2,ENST00000545607.1	chr6	163983013:163983101:163984475:163984751:163987752:163987827,	163984476	163984751	163984582	163984585	Frame_Shift_Del	CAGA	-	p.I255fs
GBM	TCGA-28-5208-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899821	163899821	Frame_Shift_Del	G	-	p.V99fs
GBM	TCGA-28-5209-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717695	89717696	Frame_Shift_Ins	-	T	p.Y240fs
GBM	TCGA-28-5218-01	INPPL1	ENST00000298229.2,ENST00000538751.1,ENST00000541756.1,ENST00000537755.1	chr11	71942185:71942233:71942541:71942659:71943283:71943380,	71942542	71942659	71942586	71942586	Frame_Shift_Del	C	-	p.V514fs
GBM	TCGA-28-5219-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708676	91708676	Frame_Shift_Del	C	-	p.T2410fs
GBM	TCGA-28-6450-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527568	29527569	Frame_Shift_Del	CT	-	p.N339fs
GBM	TCGA-28-6450-01	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82125748	82125748	Frame_Shift_Del	C	-	p.D152fs
GBM	TCGA-32-1970-01	TNK2	ENST00000489628.1	chr3	195595500:195595580:195596984:195597249:195599146:195599201,	195596985	195597249	195597005	195597006	Frame_Shift_Ins	-	G	p.Q508fs
GBM	TCGA-32-1970-01	TNK2	ENST00000411741.1,ENST00000478623.1,ENST00000392400.1,ENST00000424563.1,ENST00000428187.1,ENST00000333602.6	chr3	195595500:195595580:195596984:195597076:195599146:195599201,	195596985	195597076	195597005	195597006	Frame_Shift_Ins	-	G	p.Q508fs
GBM	TCGA-32-1977-01	TAOK3	ENST00000537305.1,ENST00000419821.2,ENST00000392533.3	chr12	118636855:118637062:118639100:118639268:118650718:118650800,	118639101	118639268	118639103	118639103	Frame_Shift_Del	C	-	p.E329fs
GBM	TCGA-32-1977-01	TIMM50	ENST00000602265.1,ENST00000595286.1,ENST00000607714.1,ENST00000602028.1,ENST00000599733.1,ENST00000597782.1,ENST00000598125.1,ENST00000544017.1,ENST00000601358.1	chr19	39971567:39971601:39972522:39972673:39976183:39976242,39971567:39971601:39972522:39972673:39973524:39973556,	39972523	39972673	39972604	39972604	Frame_Shift_Del	A	-	p.K167fs
GBM	TCGA-32-1977-01	PHF1	ENST00000374516.3	chr6	33382512:33382606:33382731:33382921:33383011:33383106,	33382732	33382921	33382871	33382871	Frame_Shift_Del	C	-	p.P397fs
GBM	TCGA-32-1977-01	PHF1	ENST00000374512.3	chr6	33382512:33382606:33382742:33382921:33383011:33383106,33382512:33382606:33382742:33382921:33383366:33383447,	33382743	33382921	33382871	33382871	Frame_Shift_Del	C	-	p.P397fs
GBM	TCGA-32-1979-01	ARPC2	ENST00000478612.1	chr2	219099074:219099120:219103386:219103573:219104113:219104207,219093525:219093573:219103386:219103573:219104113:219104207,	219103387	219103573	219103491	219103492	Frame_Shift_Del	TT	-	p.F125fs
GBM	TCGA-32-2498-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95357932	95357932	Frame_Shift_Del	T	-	p.A572fs
GBM	TCGA-32-2498-01	FGFR3	ENST00000340107.4	chr4	1805418:1805563:1806056:1806247:1806550:1806696,1804640:1804791:1806056:1806247:1806550:1806696,	1806057	1806247	1806181	1806181	Frame_Shift_Del	C	-	p.S400fs
GBM	TCGA-32-2632-01	TBC1D23	ENST00000471098.1,ENST00000344949.5,ENST00000486274.1,ENST00000394144.4,ENST00000485687.1	chr3	100000585:100000691:100002450:100002655:100009421:100009489,	100002451	100002655	100002647	100002648	Frame_Shift_Ins	-	A	p.Y156fs
GBM	TCGA-32-2634-01	WDYHV1	ENST00000523356.1,ENST00000522194.1,ENST00000519199.1	chr8	124429052:124429172:124440163:124440263:124442222:124442273,	124440164	124440263	124440173	124440173	Frame_Shift_Del	T	-	p.N31fs
GBM	TCGA-32-2638-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21361619:21361737:21362624:21362755:21364600:21364719,	21362625	21362755	21362729	21362729	Frame_Shift_Del	G	-	p.Y981fs
GBM	TCGA-32-4208-01	BOK	ENST00000318407.3	chr2	242501762:242501891:242509539:242509703:242511711:242512000,	242509540	242509703	242509549	242509549	Frame_Shift_Del	G	-	p.W120fs
GBM	TCGA-32-4209-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331664	85331665	Frame_Shift_Ins	-	A	p.S47fs
GBM	TCGA-32-4209-01	PEX5L	ENST00000476138.1,ENST00000467460.1,ENST00000464614.1,ENST00000463761.1	chr3	179605460:179605572:179615929:179616034:179754366:179754558,179605460:179605572:179615929:179616034:179689381:179689448,	179615930	179616034	179616029	179616029	Frame_Shift_Del	T	-	p.K33fs
GBM	TCGA-32-4211-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
GBM	TCGA-32-4213-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336954	Frame_Shift_Del	A	-	p.L123fs
GBM	TCGA-41-2571-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087883	109087884	Frame_Shift_Ins	-	A	p.E700fs
GBM	TCGA-41-2572-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202092	56202092	Frame_Shift_Del	T	-	p.K1776fs
GBM	TCGA-41-3393-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
GBM	TCGA-41-3915-01	HP1BP3	ENST00000438032.1	chr1	21106328:21106404:21106837:21107033:21112745:21113145,21106328:21106404:21106837:21107033:21112678:21112776,21106328:21106404:21106837:21107033:21113006:21113133,21106328:21106404:21106837:21107033:21113687:21113765,	21106838	21107033	21106920	21106921	Frame_Shift_Ins	-	T	p.T5fs
GBM	TCGA-41-3915-01	HP1BP3	ENST00000437575.1	chr1	21106328:21106404:21106842:21107033:21113687:21113765,	21106843	21107033	21106920	21106921	Frame_Shift_Ins	-	T	p.T5fs
GBM	TCGA-41-3915-01	RNF19B	ENST00000235150.4,ENST00000356990.5,ENST00000373456.7	chr1	33403997:33404129:33407852:33408060:33409619:33409760,	33407853	33408060	33408041	33408042	Frame_Shift_Ins	-	GC	p.A475fs
GBM	TCGA-41-4097-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73944358:73944607:73950965:73951163:73956383:73958017,	73950966	73951163	73951059	73951059	Frame_Shift_Del	C	-	p.A2356fs
GBM	TCGA-74-6573-01	SUMF2	ENST00000451338.1	chr7	56140701:56140804:56141806:56141911:56142278:56142332,	56141807	56141911	56141892	56141892	Frame_Shift_Del	A	-	p.E141fs
GBM	TCGA-74-6573-01	SUMF2	ENST00000437307.2	chr7	56140701:56140804:56141866:56141911:56142278:56142332,56140701:56140804:56141866:56141911:56144526:56144582,56140701:56140804:56141866:56141911:56145794:56145879,	56141867	56141911	56141892	56141892	Frame_Shift_Del	A	-	p.E141fs
GBM	TCGA-74-6573-01	SLC2A8	ENST00000373371.3,ENST00000451404.1,ENST00000423934.1,ENST00000373360.3,ENST00000419917.1,ENST00000430147.1	chr9	130162242:130162285:130164835:130165032:130166016:130166070,130162242:130162285:130164835:130165032:130165938:130166026,	130164836	130165032	130165020	130165020	Frame_Shift_Del	C	-	p.I237fs
GBM	TCGA-74-6575-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654677	29654678	Frame_Shift_Ins	-	C	p.L1810fs
GBM	TCGA-74-6577-01	COL18A1	ENST00000359759.4,ENST00000355480.5,ENST00000400337.2	chr21	46897324:46897401:46897663:46897879:46898240:46898267,	46897664	46897879	46897864	46897864	Frame_Shift_Del	A	-	p.G582fs
GBM	TCGA-76-4925-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.L247fs
GBM	TCGA-76-4925-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384892	124384893	Frame_Shift_Ins	-	T	p.K118fs
GBM	TCGA-76-4926-01	AACS	ENST00000316543.10	chr12	125603186:125603311:125609250:125609570:125612706:125612820,	125609251	125609570	125609456	125609457	Frame_Shift_Del	CA	-	p.H399fs
GBM	TCGA-76-4926-01	AACS	ENST00000316519.6,ENST00000538851.1,ENST00000545511.1,ENST00000261686.6	chr12	125609250:125609315:125609447:125609570:125612706:125612820,	125609448	125609570	125609456	125609457	Frame_Shift_Del	CA	-	p.H399fs
GBM	TCGA-76-4926-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924063	82924066	Frame_Shift_Del	ACTA	-	p.V694fs
GBM	TCGA-76-4928-01	GALNT7	ENST00000265000.4,ENST00000505308.1,ENST00000503213.1	chr4	174225169:174225269:174235108:174235327:174238784:174238883,	174235109	174235327	174235303	174235303	Frame_Shift_Del	A	-	p.P528fs
GBM	TCGA-76-4935-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45216104:45216257:45219218:45219391:45219594:45219747,	45219219	45219391	45219355	45219355	Frame_Shift_Del	C	-	p.G478fs
GBM	TCGA-76-4935-01	CDC27	ENST00000527547.1	chr17	45216104:45216257:45219218:45219388:45219594:45219747,	45219219	45219388	45219355	45219355	Frame_Shift_Del	C	-	p.G478fs
GBM	TCGA-76-6286-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336954	Frame_Shift_Del	A	-	p.L123fs
GBM	TCGA-76-6656-01	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682419	108682419	Frame_Shift_Del	T	-	p.I881fs
GBM	TCGA-76-6657-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683590	29683590	Frame_Shift_Del	T	-	p.D2576fs
GBM	TCGA-76-6657-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103338773:103338891:103339969:103340124:103341317:103341428,	103339970	103340124	103340098	103340099	Frame_Shift_Ins	-	A	p.L451fs
GBM	TCGA-76-6660-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
GBM	TCGA-76-6661-01	NEDD4L	ENST00000356462.6,ENST00000585323.1,ENST00000456986.1,ENST00000586268.1,ENST00000587190.1,ENST00000435432.2,ENST00000586263.1,ENST00000588494.1,ENST00000588066.1,ENST00000400345.3,ENST00000256832.7,ENST00000256830.9,ENST00000592846.1,ENST00000357895.5,ENST00000456173.2,ENST00000431212.2,ENST00000382850.4	chr18	55912658:55912740:55916130:55916169:55919232:55919286,	55916131	55916169	55916158	55916158	Frame_Shift_Del	T	-	p.F78fs
GBM	TCGA-76-6662-01	NAA35	ENST00000361671.5,ENST00000376040.1	chr9	88574707:88574782:88576927:88577095:88589881:88589948,	88576928	88577095	88576949	88576950	Frame_Shift_Del	TC	-	p.S124fs
GBM	TCGA-81-5911-01	VEGFB	ENST00000309422.2	chr11	64003725:64003799:64004658:64004694:64004992:64005127,64003725:64003799:64004658:64004694:64004891:64005127,	64004659	64004694	64004662	64004663	Frame_Shift_Ins	-	A	p.P126fs
HNSC	TCGA-BA-5152-01	COL14A1	ENST00000537875.1,ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000498051.2	chr8	121174664:121174808:121180399:121180486:121209029:121209185,	121180400	121180486	121180418	121180418	Frame_Shift_Del	G	-	p.R123fs
HNSC	TCGA-BB-A5HY-01	SLC22A23	ENST00000380302.4,ENST00000467177.1,ENST00000467144.1,ENST00000406686.3,ENST00000485307.1,ENST00000436008.2,ENST00000497691.1,ENST00000490273.1	chr6	3287217:3287325:3289997:3290100:3298324:3298452,	3289998	3290100	3290057	3290058	Frame_Shift_Ins	-	A	p.S418fs
HNSC	TCGA-BB-A5HY-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29187450:29187630:29192721:29192818:29195350:29195430,	29192722	29192818	29192759	29192760	Frame_Shift_Ins	-	CAAC	p.*T1058fs
HNSC	TCGA-CN-6998-01	KCNT2	ENST00000610076.1	chr1	196309618:196309700:196311208:196311379:196342269:196342378,	196311209	196311379	196311261	196311262	Frame_Shift_Ins	-	A	p.*501fs
HNSC	TCGA-CN-6998-01	KCNT2	ENST00000294725.9,ENST00000367433.5,ENST00000451324.2,ENST00000498426.1	chr1	196309618:196309700:196311208:196311358:196342269:196342378,	196311209	196311358	196311261	196311262	Frame_Shift_Ins	-	A	p.*501fs
HNSC	TCGA-CN-A6V1-01	STRADB	ENST00000194530.3,ENST00000392249.2	chr2	202342872:202342914:202343079:202343324:202344211:202344254,	202343080	202343324	202343234	202343234	Frame_Shift_Del	G	-	p.S327fs
HNSC	TCGA-CN-5361-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24825702:24825822:24831621:24831699:24833909:24834032,24825702:24825822:24831621:24831699:24831811:24832637,	24831622	24831699	24831690	24831691	Frame_Shift_Ins	-	T	p.P885fs
HNSC	TCGA-CN-5361-01	SIK2	ENST00000304987.3	chr11	111558724:111558886:111571609:111571734:111572175:111572299,	111571610	111571734	111571666	111571667	Frame_Shift_Ins	-	G	p.P179fs
HNSC	TCGA-CN-5361-01	FLNA	ENST00000369850.3,ENST00000422373.1	chrX	153596209:153596458:153599240:153599729:153602873:153602994,	153599241	153599729	153599568	153599569	Frame_Shift_Ins	-	CG	p.S16fs
HNSC	TCGA-CV-7090-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171600	36171601	Frame_Shift_Ins	-	A	p.N295fs
HNSC	TCGA-CQ-7069-01	FRMD8	ENST00000416776.2	chr11	65154507:65154592:65156831:65156999:65161043:65161061,65154507:65154592:65156831:65156999:65161511:65161570,	65156832	65156999	65156899	65156899	Frame_Shift_Del	G	-	p.S51fs
HNSC	TCGA-CQ-7069-01	FRMD8	ENST00000526201.1	chr11	65154507:65154592:65156855:65156999:65161511:65161570,	65156856	65156999	65156899	65156899	Frame_Shift_Del	G	-	p.S51fs
HNSC	TCGA-MZ-A7D7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578250	7578250	Frame_Shift_Del	T	-	p.N200fs
HNSC	TCGA-CQ-5333-01	BTNL8	ENST00000503543.1	chr5	180338488:180338614:180374624:180374755:180375354:180375375,	180374625	180374755	180374749	180374750	Frame_Shift_Ins	-	A	p.Q304fs
HNSC	TCGA-CQ-5333-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374749	180374750	Frame_Shift_Ins	-	A	p.Q304fs
HNSC	TCGA-CV-7410-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919453	57919454	Frame_Shift_Ins	-	T	p.Q235fs
HNSC	TCGA-CV-7250-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107331	14107331	Frame_Shift_Del	C	-	p.A1014fs
HNSC	TCGA-CV-7250-01	ZMYM2	ENST00000382871.2,ENST00000382870.3,ENST00000382874.2,ENST00000382869.3	chr13	20638590:20638685:20640990:20641159:20641378:20641530,	20640991	20641159	20641147	20641148	Frame_Shift_Del	GA	-	p.E1097fs
HNSC	TCGA-CV-7250-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38266203:38266472:38320073:38320592:38357092:38357470,	38320074	38320592	38320520	38320520	Frame_Shift_Del	G	-	p.H151fs
HNSC	TCGA-CV-7250-01	PGS1	ENST00000588169.1,ENST00000589689.1,ENST00000588281.1,ENST00000589426.1,ENST00000329897.7,ENST00000262764.6,ENST00000592043.1	chr17	76395428:76395618:76396757:76396936:76399648:76399760,	76396758	76396936	76396892	76396892	Frame_Shift_Del	A	-	p.D280fs
HNSC	TCGA-CV-7250-01	PGS1	ENST00000589425.1	chr17	76395428:76395618:76396815:76396936:76399648:76399760,	76396816	76396936	76396892	76396892	Frame_Shift_Del	A	-	p.D280fs
HNSC	TCGA-CV-7250-01	FCHO2	ENST00000512348.1	chr5	72302271:72302376:72313038:72313135:72330483:72330528,	72313039	72313135	72313079	72313086	Frame_Shift_Del	TTGAAAGT	-	p.VES247fs
HNSC	TCGA-CV-6935-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670222	186670223	Frame_Shift_Ins	-	T	p.F5486fs
HNSC	TCGA-CV-7438-01	KHDRBS1	ENST00000492989.1	chr1	32495898:32496023:32498788:32498935:32502510:32502644,	32498789	32498935	32498892	32498892	Frame_Shift_Del	T	-	p.L243fs
HNSC	TCGA-CV-7438-01	GGCX	ENST00000233838.4,ENST00000430215.3	chr2	85778959:85779104:85779538:85779690:85780061:85780193,	85779539	85779690	85779683	85779683	Frame_Shift_Del	G	-	p.T432fs
HNSC	TCGA-CV-7438-01	RIC3	ENST00000524799.1,ENST00000343202.4	chr11	8148205:8148351:8158924:8159018:8159818:8159894,	8158925	8159018	8158952	8158953	Frame_Shift_Ins	-	T	p.Q165fs
HNSC	TCGA-CV-A6JM-01	SHKBP1	ENST00000595726.1	chr19	41092801:41092850:41096635:41096759:41096881:41096993,41095006:41095084:41096635:41096759:41096881:41096993,	41096636	41096759	41096680	41096681	Frame_Shift_Del	TG	-	p.C605fs
HNSC	TCGA-CV-A6JM-01	SHKBP1	ENST00000596163.1,ENST00000594862.1	chr19	41095006:41095084:41096638:41096759:41096881:41096993,	41096639	41096759	41096680	41096681	Frame_Shift_Del	TG	-	p.C605fs
HNSC	TCGA-CR-6472-01	CELSR2	ENST00000271332.3	chr1	109811202:109811386:109811501:109811630:109811731:109811912,	109811502	109811630	109811620	109811621	Frame_Shift_Del	TG	-	p.SV2207fs
HNSC	TCGA-CR-6472-01	SLC4A4	ENST00000264485.5,ENST00000340595.3,ENST00000351898.6	chr4	72425809:72425971:72429509:72429606:72432720:72432790,	72429510	72429606	72429528	72429529	Frame_Shift_Ins	-	A	p.K996fs
HNSC	TCGA-CR-6472-01	ARHGEF1	ENST00000347545.4,ENST00000594044.1,ENST00000337665.4,ENST00000600274.1,ENST00000599589.1,ENST00000595897.1,ENST00000594258.1,ENST00000354532.3,ENST00000378152.4,ENST00000599846.1	chr19	42406423:42406506:42406682:42406808:42406933:42407047,	42406683	42406808	42406794	42406803	Frame_Shift_Del	TGTGCCTTCG	-	p.CAFV593fs
HNSC	TCGA-QK-AA3K-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17701398	17701398	Frame_Shift_Del	C	-	p.L1712fs
HNSC	TCGA-QK-AA3K-01	TSEN34	ENST00000396383.1,ENST00000396388.2,ENST00000302937.4,ENST00000429671.2,ENST00000496583.1	chr19	54695571:54695815:54695966:54696224:54697029:54697173,	54695967	54696224	54696135	54696136	Frame_Shift_Ins	-	GCTA	p.P219fs
HNSC	TCGA-UF-A7JH-01	MYRF	ENST00000278836.5,ENST00000265460.5,ENST00000327797.1	chr11	61543793:61543904:61544258:61544349:61544735:61544936,	61544259	61544349	61544274	61544274	Frame_Shift_Del	G	-	p.V506fs
HNSC	TCGA-UF-A7JH-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577095	7577096	Frame_Shift_Ins	-	TCTC	p.A281fs
HNSC	TCGA-F7-A61V-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.HP1875fs
HNSC	TCGA-F7-A61V-01	RAB37	ENST00000392614.4,ENST00000488977.1,ENST00000392615.5,ENST00000528438.1,ENST00000392612.3,ENST00000392613.5,ENST00000481224.1,ENST00000402449.4	chr17	72741011:72741068:72741146:72741223:72741444:72741629,	72741147	72741223	72741214	72741217	Frame_Shift_Del	CCAT	-	p.AI179fs
HNSC	TCGA-CV-5966-01	RABGGTB	ENST00000471759.1,ENST00000319942.3,ENST00000462042.1,ENST00000473406.1,ENST00000535300.1,ENST00000470201.1,ENST00000370826.3,ENST00000491266.1	chr1	76253181:76253289:76254843:76255041:76255636:76255959,	76254844	76255041	76255009	76255009	Frame_Shift_Del	C	-	p.P93fs
HNSC	TCGA-BA-A6DJ-01	PCSK9	ENST00000452118.2	chr1	55505430:55505717:55509515:55509707:55512195:55512319,	55509516	55509707	55509581	55509582	Frame_Shift_Del	AG	-	p.SE91fs
HNSC	TCGA-BA-A6DJ-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187538959	187538960	Frame_Shift_Ins	-	A	p.E2927fs
HNSC	TCGA-BA-A6DJ-01	NAGLU	ENST00000225927.2	chr17	40690687:40690773:40692967:40693224:40695045:40695338,	40692968	40693224	40693145	40693146	Frame_Shift_Del	CA	-	p.FN314fs
HNSC	TCGA-BA-A6DJ-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57955661:57955695:57958254:57958471:57962021:57962117,57955661:57955695:57958254:57958471:57963443:57963591,	57958255	57958471	57958381	57958382	Frame_Shift_Ins	-	A	p.Y137fs
HNSC	TCGA-CR-7393-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579566	7579566	Frame_Shift_Del	C	-	p.D42fs
HNSC	TCGA-HD-7831-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578205	7578206	Frame_Shift_Ins	-	T	p.C215fs
HNSC	TCGA-CN-4736-01	SYT5	ENST00000589172.1,ENST00000537500.1,ENST00000354308.3,ENST00000592470.1	chr19	55687372:55687492:55689563:55689736:55690330:55690433,	55689564	55689736	55689729	55689729	Frame_Shift_Del	G	-	p.P29fs
HNSC	TCGA-DQ-5631-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539889	120539893	Frame_Shift_Del	GTGGT	-	p.TT160fs
HNSC	TCGA-CV-5440-01	ZNF365	ENST00000395251.1,ENST00000410046.3,ENST00000373784.2	chr10	64416155:64416246:64425888:64425962:64429966:64430134,	64425889	64425962	64425946	64425946	Frame_Shift_Del	C	-	p.L426fs
HNSC	TCGA-BA-A6DE-01	PPFIA4	ENST00000295706.4,ENST00000367240.2,ENST00000447715.2	chr1	203013823:203013913:203014495:203014687:203014968:203015115,	203014496	203014687	203014590	203014591	Frame_Shift_Ins	-	A	p.N254fs
HNSC	TCGA-UF-A71E-01	ORMDL2	ENST00000552672.1	chr12	56211827:56211896:56212874:56212957:56213125:56213204,	56212875	56212957	56212928	56212928	Frame_Shift_Del	T	-	p.W49fs
HNSC	TCGA-UF-A71E-01	FBXL19	ENST00000471231.2,ENST00000562319.1,ENST00000427128.1,ENST00000380310.2,ENST00000338343.4	chr16	30938893:30938980:30939065:30939284:30939787:30939820,	30939066	30939284	30939204	30939204	Frame_Shift_Del	C	-	p.P185fs
HNSC	TCGA-MT-A67D-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113168593	113168594	Frame_Shift_Ins	-	T	p.T3096fs
HNSC	TCGA-MT-A67D-01	GALK1	ENST00000592494.1	chr17	73754671:73754680:73758784:73759520:73759977:73760086,	73758785	73759520	73758797	73758797	Frame_Shift_Del	C	-	p.E262fs
HNSC	TCGA-CN-4727-01	EFCAB14	ENST00000484461.1,ENST00000371933.3	chr1	47152455:47152542:47154024:47154216:47155258:47155308,	47154025	47154216	47154099	47154100	Frame_Shift_Ins	-	CTGGGTAAGATTA	p.QS304fs
HNSC	TCGA-CN-4727-01	DBT	ENST00000370132.4	chr1	100671785:100671857:100672000:100672192:100676249:100676327,	100672001	100672192	100672035	100672035	Frame_Shift_Del	G	-	p.T392fs
HNSC	TCGA-CN-4727-01	RGS1	ENST00000367459.3	chr1	192545903:192545965:192547351:192547515:192548266:192549071,	192547352	192547515	192547358	192547358	Frame_Shift_Del	A	-	p.Q96fs
HNSC	TCGA-CN-4727-01	RFC4	ENST00000296273.2,ENST00000447345.1,ENST00000494047.1,ENST00000433496.1,ENST00000392481.2,ENST00000418288.1	chr3	186510643:186510736:186512446:186512566:186515323:186515403,	186512447	186512566	186512478	186512478	Frame_Shift_Del	C	-	p.A127fs
HNSC	TCGA-CN-4727-01	RFC4	ENST00000449502.1	chr3	186510643:186510736:186512446:186512570:186515323:186515403,	186512447	186512570	186512478	186512478	Frame_Shift_Del	C	-	p.A127fs
HNSC	TCGA-CN-4727-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79291060:79291167:79292084:79292255:79294003:79294129,	79292085	79292255	79292140	79292140	Frame_Shift_Del	G	-	p.A913fs
HNSC	TCGA-CN-4727-01	UPF3B	ENST00000345865.2,ENST00000276201.2	chrX	118977153:118977264:118979160:118979259:118985457:118985564,	118979161	118979259	118979179	118979180	Frame_Shift_Ins	-	T	p.NR150fs
HNSC	TCGA-UF-A7JT-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540893	187540894	Frame_Shift_Del	AC	-	p.VF2282fs
HNSC	TCGA-UF-A7JT-01	KMT2D	ENST00000301067.7	chr12	49421791:49421924:49422610:49422741:49422843:49423019,	49422611	49422741	49422626	49422627	Frame_Shift_Del	AG	-	p.S4789fs
HNSC	TCGA-CQ-A4C7-01	IL4R	ENST00000566318.1	chr16	27357787:27357939:27363860:27364017:27367128:27367197,27356228:27356341:27363860:27364017:27367128:27367197,	27363861	27364017	27363939	27363942	Frame_Shift_Del	AGGG	-	p.RA198fs
HNSC	TCGA-CQ-A4C7-01	PAFAH1B3	ENST00000596265.1,ENST00000594989.1,ENST00000601865.1,ENST00000538771.1,ENST00000597333.1,ENST00000595530.1,ENST00000599778.1	chr19	42804322:42804439:42806101:42806191:42806383:42806444,	42806102	42806191	42806160	42806160	Frame_Shift_Del	T	-	p.K37fs
HNSC	TCGA-CN-5364-01	FBXO11	ENST00000434234.1	chr2	48016460:48016579:48035132:48035386:48035467:48035566,	48035133	48035386	48035326	48035327	Frame_Shift_Ins	-	GG	p.H905fs
HNSC	TCGA-CN-5364-01	TBRG4	ENST00000478532.1	chr7	45145039:45145363:45148530:45148886:45151262:45151307,	45148531	45148886	45148633	45148634	Frame_Shift_Ins	-	A	p.R68fs
HNSC	TCGA-CN-5364-01	TBRG4	ENST00000361278.3	chr7	45145039:45145363:45148425:45148886:45151262:45151307,45145039:45145363:45148425:45148886:45151241:45151279,	45148426	45148886	45148633	45148634	Frame_Shift_Ins	-	A	p.R68fs
HNSC	TCGA-CN-5364-01	TBRG4	ENST00000494076.1	chr7	45145039:45145363:45148425:45148842:45151241:45151279,	45148426	45148842	45148633	45148634	Frame_Shift_Ins	-	A	p.R68fs
HNSC	TCGA-CV-6945-01	THBS2	ENST00000366787.3	chr6	169646291:169646376:169648511:169649068:169650827:169650901,	169648512	169649068	169648982	169648983	Frame_Shift_Del	CG	-	p.RG46fs
HNSC	TCGA-F7-A50J-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122419372:122420482:122422588:122422825:122423373:122423595,	122422589	122422825	122422803	122422816	Frame_Shift_Del	ATGGTAGCACATCT	-	p.NGSTS1099fs
HNSC	TCGA-CQ-A4CD-01	CDK4	ENST00000551800.1	chr12	58145079:58145125:58145282:58145479:58145957:58146132,	58145283	58145479	58145293	58145294	Frame_Shift_Ins	-	G	p.C70fs
HNSC	TCGA-CQ-A4CD-01	CDK4	ENST00000312990.6,ENST00000550419.1,ENST00000551888.1	chr12	58144720:58144873:58145282:58145519:58145957:58146059,58145079:58145125:58145282:58145519:58145957:58146059,	58145283	58145519	58145293	58145294	Frame_Shift_Ins	-	G	p.C70fs
HNSC	TCGA-CQ-A4CD-01	CDK4	ENST00000551706.1	chr12	58144720:58144873:58144989:58145519:58145957:58146059,	58144990	58145519	58145293	58145294	Frame_Shift_Ins	-	G	p.C70fs
HNSC	TCGA-CQ-A4CD-01	CDK4	ENST00000547281.1	chr12	58145079:58145125:58145282:58145442:58145957:58146059,	58145283	58145442	58145293	58145294	Frame_Shift_Ins	-	G	p.C70fs
HNSC	TCGA-CQ-A4CD-01	CDK4	ENST00000552388.1	chr12	58145079:58145125:58145282:58145535:58145957:58146059,	58145283	58145535	58145293	58145294	Frame_Shift_Ins	-	G	p.C70fs
HNSC	TCGA-CR-7383-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
HNSC	TCGA-CN-6997-01	MBD1	ENST00000349085.2,ENST00000592060.1,ENST00000398488.1,ENST00000587605.1	chr18	47799217:47799325:47799933:47800233:47800555:47800720,47799217:47799325:47799933:47800233:47801346:47801415,	47799934	47800233	47800213	47800214	Frame_Shift_Ins	-	AC	p.V389fs
HNSC	TCGA-BA-A6DA-01	VANGL2	ENST00000368061.2	chr1	160385437:160385698:160385851:160385972:160388791:160389399,	160385852	160385972	160385889	160385889	Frame_Shift_Del	G	-	p.G38fs
HNSC	TCGA-BA-A6DA-01	PTPN7	ENST00000435759.2	chr1	202126866:202126951:202127245:202127448:202128408:202128469,	202127246	202127448	202127306	202127306	Frame_Shift_Del	A	-	p.L187fs
HNSC	TCGA-BA-A6DA-01	PTPN7	ENST00000308986.5,ENST00000477554.1,ENST00000476061.1,ENST00000486116.1,ENST00000309017.3,ENST00000464870.1,ENST00000495688.1	chr1	202126866:202126951:202127245:202127429:202128408:202128469,	202127246	202127429	202127306	202127306	Frame_Shift_Del	A	-	p.L187fs
HNSC	TCGA-BA-A6DA-01	PTPN7	ENST00000496197.1	chr1	202126866:202126951:202127245:202127376:202128408:202128469,	202127246	202127376	202127306	202127306	Frame_Shift_Del	A	-	p.L187fs
HNSC	TCGA-BA-A6DA-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151054719:151055228:151089773:151089874:151107525:151107595,	151089774	151089874	151089835	151089835	Frame_Shift_Del	C	-	p.A158fs
HNSC	TCGA-BA-A6DA-01	TYW1	ENST00000359626.5,ENST00000361660.4	chr7	66474569:66474671:66479353:66479548:66482839:66482868,	66479354	66479548	66479503	66479503	Frame_Shift_Del	G	-	p.A175fs
HNSC	TCGA-BA-A6DA-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579063	82579063	Frame_Shift_Del	G	-	p.P3614fs
HNSC	TCGA-BA-A6DA-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971063	21971063	Frame_Shift_Del	G	-	p.P113fs
HNSC	TCGA-BA-A6DA-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971063	21971063	Frame_Shift_Del	G	-	p.P113fs
HNSC	TCGA-BA-A6DA-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729847	24729847	Frame_Shift_Del	C	-	p.G189fs
HNSC	TCGA-BA-A6DA-01	LAIR2	ENST00000351841.2	chr19	55014915:55014951:55019105:55019399:55021735:55021897,	55019106	55019399	55019138	55019138	Frame_Shift_Del	C	-	p.P35fs
HNSC	TCGA-BA-A6DA-01	ZNF185	ENST00000370270.2,ENST00000535861.1,ENST00000539731.1,ENST00000436731.2	chrX	152101416:152101515:152106617:152106707:152113810:152114008,152104961:152105057:152106617:152106707:152113810:152114008,	152106618	152106707	152106684	152106684	Frame_Shift_Del	G	-	p.E427fs
HNSC	TCGA-BA-5559-01	SIMC1	ENST00000429602.2	chr5	175665509:175665640:175716656:175717958:175722032:175722080,	175716657	175717958	175717758	175717759	Frame_Shift_Del	CT	-	p.L392fs
HNSC	TCGA-BA-5559-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39831282	39831285	Frame_Shift_Del	GTTT	-	p.KL758fs
HNSC	TCGA-BA-5559-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39831282	39831285	Frame_Shift_Del	GTTT	-	p.KL758fs
HNSC	TCGA-CX-A4AQ-01	PUM1	ENST00000257075.5,ENST00000373741.4,ENST00000440538.2,ENST00000480602.1,ENST00000426105.2,ENST00000525843.1,ENST00000373747.3,ENST00000525948.1	chr1	31468028:31468067:31478699:31478878:31479840:31479946,	31478700	31478878	31478756	31478774	Frame_Shift_Del	CCATGCTAACGCCTAGTCC	-	p.GLGVSMV216fs
HNSC	TCGA-CX-A4AQ-01	ETV6	ENST00000396373.4	chr12	11905434:11905513:11992073:11992238:12006360:12006495,	11992074	11992238	11992150	11992153	Frame_Shift_Del	GCCA	-	p.RP80fs
HNSC	TCGA-CX-A4AQ-01	NWD1	ENST00000549814.1,ENST00000438489.2,ENST00000523826.1,ENST00000552788.1,ENST00000518676.1,ENST00000339803.6	chr19	16918396:16918947:16923555:16923661:16925838:16927537,	16923556	16923661	16923646	16923655	Frame_Shift_Del	TGGAGTGTGC	-	p.WSVL1460fs
HNSC	TCGA-D6-A6EQ-01	CD276	ENST00000559978.1,ENST00000318443.5,ENST00000561176.1,ENST00000560928.1,ENST00000318424.5,ENST00000564751.1,ENST00000559073.1,ENST00000537340.2	chr15	74001988:74002030:74003475:74003511:74005274:74005297,	74003476	74003511	74003500	74003500	Frame_Shift_Del	A	-	p.D524fs
HNSC	TCGA-UF-A7JS-01	HELLS	ENST00000394044.1,ENST00000348459.5,ENST00000239026.6,ENST00000371332.4,ENST00000419900.1,ENST00000394045.1	chr10	96322447:96322484:96322568:96322633:96331144:96331186,	96322569	96322633	96322571	96322571	Frame_Shift_Del	A	-	p.M125fs
HNSC	TCGA-UF-A7JS-01	CWF19L1	ENST00000370379.1	chr10	101996606:101996726:101997778:101997988:102003454:102003529,101995423:101995521:101997778:101997988:102003454:102003529,	101997779	101997988	101997803	101997804	Frame_Shift_Ins	-	T	p.*410fs
HNSC	TCGA-CQ-5334-01	THEM4	ENST00000368814.3	chr1	151860748:151860859:151861689:151861849:151867483:151867670,	151861690	151861849	151861698	151861699	Frame_Shift_Ins	-	C	p.A146fs
HNSC	TCGA-CQ-5334-01	RAN	ENST00000541630.1,ENST00000543796.1,ENST00000477395.1,ENST00000392369.2,ENST00000448750.3,ENST00000535090.1,ENST00000254675.3	chr12	131357547:131357673:131359090:131359278:131360156:131360184,	131359091	131359278	131359130	131359133	Frame_Shift_Del	TTAC	-	p.VT96fs
HNSC	TCGA-CQ-5334-01	RAN	ENST00000536606.1	chr12	131357547:131357673:131359095:131359278:131360156:131360184,	131359096	131359278	131359130	131359133	Frame_Shift_Del	TTAC	-	p.VT96fs
HNSC	TCGA-CQ-5334-01	MEDAG	ENST00000380482.4	chr13	31495154:31495263:31495697:31495983:31498447:31498586,	31495698	31495983	31495735	31495736	Frame_Shift_Ins	-	A	p.R180fs
HNSC	TCGA-CV-A468-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29319841:29320054:29323726:29323831:29338376:29338412,	29323727	29323831	29323785	29323785	Frame_Shift_Del	A	-	p.E248fs
HNSC	TCGA-CR-7367-01	TBC1D14	ENST00000409757.4,ENST00000410031.1,ENST00000448507.1,ENST00000446947.2,ENST00000451522.2	chr4	7016174:7016284:7026730:7026989:7032053:7032547,	7026731	7026989	7026838	7026848	Frame_Shift_Del	TCCTGAAGCTG	-	p.ILKL622fs
HNSC	TCGA-CR-7367-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3,ENST00000497100.1	chrX	53239595:53239758:53239857:53240039:53240678:53240837,	53239858	53240039	53240037	53240038	Frame_Shift_Ins	-	A	p.V401fs
HNSC	TCGA-CV-5970-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5399028:5399200:5401224:5401353:5401527:5401658,	5401225	5401353	5401259	5401259	Frame_Shift_Del	G	-	p.R1543fs
HNSC	TCGA-CV-5970-01	HYDIN	ENST00000393567.2	chr16	70942555:70942764:70952113:70952332:70954493:70955120,	70952114	70952332	70952161	70952162	Frame_Shift_Ins	-	T	p.N2653fs
HNSC	TCGA-CV-5970-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508369	71508370	Frame_Shift_Ins	-	A	p.K169fs
HNSC	TCGA-CV-7418-01	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785730	28785730	Frame_Shift_Del	A	-	p.K53fs
HNSC	TCGA-CV-7418-01	TGM7	ENST00000452443.2	chr15	43577011:43577150:43579477:43579655:43579738:43579867,	43579478	43579655	43579612	43579612	Frame_Shift_Del	C	-	p.G244fs
HNSC	TCGA-UF-A718-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000601032.1,ENST00000243562.9,ENST00000396819.3,ENST00000308370.7,ENST00000545697.1,ENST00000318809.7,ENST00000601209.1,ENST00000598677.1,ENST00000595118.1,ENST00000602240.1	chr19	41131761:41131914:41132879:41133260:41133609:41133625,	41132880	41133260	41132910	41132911	Frame_Shift_Ins	-	C	p.P1405fs
HNSC	TCGA-P3-A6SX-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971156	21971156	Frame_Shift_Del	C	-	p.R82fs
HNSC	TCGA-P3-A6SX-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971156	21971156	Frame_Shift_Del	C	-	p.R82fs
HNSC	TCGA-CN-A63U-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42047689	42047689	Frame_Shift_Del	G	-	p.P927fs
HNSC	TCGA-CN-A63U-01	VCAM1	ENST00000347652.2	chr1	101190179:101190446:101196753:101197074:101197973:101198240,	101196754	101197074	101196842	101196842	Frame_Shift_Del	C	-	p.Y431fs
HNSC	TCGA-CN-A63U-01	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324217	158324217	Frame_Shift_Del	T	-	p.F37fs
HNSC	TCGA-CN-A63U-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899343	133899343	Frame_Shift_Del	G	-	p.E576fs
HNSC	TCGA-CN-A63U-01	MCOLN1	ENST00000601003.1,ENST00000394321.5	chr19	7587572:7587667:7589846:7590052:7591324:7591492,	7589847	7590052	7589876	7589876	Frame_Shift_Del	G	-	p.G21fs
HNSC	TCGA-HD-8634-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958026	76958026	Frame_Shift_Del	T	-	p.K625fs
HNSC	TCGA-CV-5976-01	EMC10	ENST00000601780.1,ENST00000376918.3	chr19	50984140:50984234:50985117:50985204:50985405:50985419,	50985118	50985204	50985131	50985132	Frame_Shift_Ins	-	G	p.R231fs
HNSC	TCGA-CN-6017-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535489	40535490	Frame_Shift_Ins	-	G	p.S313fs
HNSC	TCGA-CN-6017-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579441	7579453	Frame_Shift_Del	CGGTGTAGGAGCT	-	p.AAPTP78fs
HNSC	TCGA-CV-7101-01	SLC16A10	ENST00000368851.5	chr6	111493897:111494042:111498414:111498868:111527794:111527938,	111498415	111498868	111498539	111498558	Frame_Shift_Del	ATTGTCACTGCTGGCAGCAG	-	p.IVTAGSS205fs
HNSC	TCGA-CR-7373-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920934	57920934	Frame_Shift_Del	C	-	p.A669fs
HNSC	TCGA-BB-4217-01	CYP4B1	ENST00000371923.4,ENST00000371919.4,ENST00000271153.4,ENST00000464439.2,ENST00000452782.2,ENST00000534708.2	chr1	47283673:47283701:47283802:47283885:47284302:47284342,	47283803	47283885	47283811	47283812	Frame_Shift_Del	CT	-	p.DS426fs
HNSC	TCGA-CV-7252-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539457	187539469	Frame_Shift_Del	CTTCAGTCTCCCG	-	p.SGRLK2757fs
HNSC	TCGA-CV-7252-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420671	49420672	Frame_Shift_Ins	-	GGTA	p.-5025fs
HNSC	TCGA-CV-7252-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578267	7578268	Frame_Shift_Ins	-	AG	p.H194fs
HNSC	TCGA-CV-A464-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000411772.1	chr15	43712815:43712933:43713222:43713372:43714052:43714324,	43713223	43713372	43713342	43713345	Frame_Shift_Del	CGTC	-	p.GT1371fs
HNSC	TCGA-CR-7368-01	RINT1	ENST00000474123.1,ENST00000257700.2,ENST00000497979.1	chr7	105190505:105190612:105190707:105190933:105192016:105192154,	105190708	105190933	105190824	105190834	Frame_Shift_Del	TGAAAGGGAGC	-	p.FEREL408fs
HNSC	TCGA-CR-7368-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149853	39149853	Frame_Shift_Del	C	-	p.A533fs
HNSC	TCGA-CR-7368-01	SLC7A5	ENST00000261622.4	chr16	87874655:87874761:87885329:87885455:87902490:87903094,	87885330	87885455	87885358	87885359	Frame_Shift_Ins	-	A	p.T212fs
HNSC	TCGA-BA-A4II-01	DENND1B	ENST00000235453.4,ENST00000400967.2,ENST00000367396.3	chr1	197522151:197522242:197552281:197552383:197564337:197564463,	197552282	197552383	197552285	197552285	Frame_Shift_Del	C	-	p.K352fs
HNSC	TCGA-BA-A4IF-01	F13A1	ENST00000264870.3	chr6	6167690:6167851:6174812:6175100:6182220:6182374,	6174813	6175100	6174921	6174921	Frame_Shift_Del	G	-	p.R547fs
HNSC	TCGA-QK-A64Z-01	RAPGEF3	ENST00000548919.1,ENST00000549151.1	chr12	48145698:48145752:48151648:48151861:48164639:48164817,	48151649	48151861	48151827	48151830	Frame_Shift_Del	CCCA	-	p.VG13fs
HNSC	TCGA-CN-5363-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577092	7577092	Frame_Shift_Del	C	-	p.R283fs
HNSC	TCGA-CV-7091-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579718	7579718	Frame_Shift_Del	A	-	p.L26fs
HNSC	TCGA-CV-6942-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541705	187541721	Frame_Shift_Del	AAAGGCTCATTGATTGG	-	p.PINEPL2007fs
HNSC	TCGA-CV-7406-01	CASZ1	ENST00000377022.3,ENST00000496432.2,ENST00000344008.5	chr1	10714475:10714648:10715705:10715870:10716702:10716793,	10715706	10715870	10715845	10715857	Frame_Shift_Del	ATCACGTCCTGCT	-	p.KQDVI505fs
HNSC	TCGA-CV-7406-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39801943	39801943	Frame_Shift_Del	A	-	p.E3228fs
HNSC	TCGA-UF-A71A-01	GLB1	ENST00000445488.2,ENST00000436768.1	chr3	33114035:33114205:33118585:33118729:33138502:33138638,	33118586	33118729	33118660	33118660	Frame_Shift_Del	T	-	p.R49fs
HNSC	TCGA-QK-A8Z7-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21395842:21396017:21396270:21396428:21401205:21401318,	21396271	21396428	21396296	21396297	Frame_Shift_Ins	-	AA	p.G325fs
HNSC	TCGA-QK-A8Z7-01	RABL2B	ENST00000436958.1	chr22	51207468:51207552:51207852:51207980:51214199:51214261,	51207853	51207980	51207956	51207957	Frame_Shift_Ins	-	T	p.L145fs
HNSC	TCGA-QK-A8Z7-01	RABL2B	ENST00000425098.1	chr22	51207468:51207552:51207882:51207980:51214199:51214261,	51207883	51207980	51207956	51207957	Frame_Shift_Ins	-	T	p.L145fs
HNSC	TCGA-IQ-A61K-01	COL7A1	ENST00000454817.1,ENST00000328333.8	chr3	48630788:48630882:48630969:48631129:48631800:48631981,	48630970	48631129	48631047	48631048	Frame_Shift_Ins	-	GTTG	p.S117fs
HNSC	TCGA-CV-6960-01	CD27	ENST00000541233.1,ENST00000266557.3	chr12	6554589:6554721:6559338:6559518:6559706:6559796,	6559339	6559518	6559460	6559466	Frame_Shift_Del	TCGGTCG	-	p.ARS130fs
HNSC	TCGA-CV-6960-01	GTF2H3	ENST00000537695.1,ENST00000538533.1,ENST00000543341.2,ENST00000536375.1,ENST00000537368.1,ENST00000228955.7,ENST00000538845.1,ENST00000543415.1,ENST00000539994.1	chr12	124130001:124130108:124132509:124132673:124135540:124135603,	124132510	124132673	124132650	124132650	Frame_Shift_Del	A	-	p.E114fs
HNSC	TCGA-CV-6960-01	CPNE2	ENST00000537605.1	chr16	57126518:57126702:57144619:57144834:57147199:57147264,	57144620	57144834	57144698	57144698	Frame_Shift_Del	C	-	p.A15fs
HNSC	TCGA-CV-6960-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51159933	51159933	Frame_Shift_Del	G	-	p.L1210fs
HNSC	TCGA-CV-A45W-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048654	42048654	Frame_Shift_Del	C	-	p.E605fs
HNSC	TCGA-CV-A45W-01	CD46	ENST00000358170.2,ENST00000367041.1,ENST00000488596.1,ENST00000367042.1	chr1	207959000:207959027:207963597:207963690:207966863:207966953,	207963598	207963690	207963626	207963627	Frame_Shift_Ins	-	AAGT	p.S386fs
HNSC	TCGA-CV-A45W-01	FGG	ENST00000404648.3,ENST00000405164.1,ENST00000492082.1	chr4	155525324:155525506:155526048:155526218:155527856:155527974,	155526049	155526218	155526059	155526059	Frame_Shift_Del	C	-	p.G430fs
HNSC	TCGA-CV-A45W-01	UROS	ENST00000368797.4,ENST00000368774.1,ENST00000368778.3	chr10	127503602:127503699:127505005:127505094:127511597:127511658,127504745:127504829:127505005:127505094:127511597:127511658,	127505006	127505094	127505020	127505020	Frame_Shift_Del	C	-	p.D17fs
HNSC	TCGA-CV-A45W-01	MAP3K11	ENST00000530153.1,ENST00000309100.3,ENST00000532507.1	chr11	65365226:65366099:65366864:65367239:65373231:65373323,	65366865	65367239	65367018	65367019	Frame_Shift_Del	GC	-	p.AP684fs
HNSC	TCGA-CV-A45W-01	MGRN1	ENST00000399577.5,ENST00000536343.1,ENST00000415496.1,ENST00000586183.1,ENST00000262370.7,ENST00000590790.1,ENST00000587747.1,ENST00000588994.1	chr16	4702678:4702825:4707246:4707364:4714709:4714776,	4707247	4707364	4707252	4707253	Frame_Shift_Ins	-	C	p.T150fs
HNSC	TCGA-CV-A45W-01	GHDC	ENST00000414034.3	chr17	40341107:40341939:40342202:40342377:40342641:40342775,	40342203	40342377	40342251	40342251	Frame_Shift_Del	A	-	p.F442fs
HNSC	TCGA-CV-A45W-01	GHDC	ENST00000587427.1,ENST00000301671.8,ENST00000428494.2	chr17	40340816:40341105:40342202:40342288:40342641:40342775,40341107:40341939:40342202:40342288:40342641:40342775,	40342203	40342288	40342251	40342251	Frame_Shift_Del	A	-	p.F442fs
HNSC	TCGA-CV-A45W-01	KDSR	ENST00000585750.1	chr18	61011642:61011726:61018120:61018310:61022436:61022532,	61018121	61018310	61018124	61018125	Frame_Shift_Ins	-	A	p.R202fs
HNSC	TCGA-CV-A45W-01	KDSR	ENST00000406396.3,ENST00000591902.1	chr18	61011642:61011726:61018120:61018312:61022436:61022532,	61018121	61018312	61018124	61018125	Frame_Shift_Ins	-	A	p.R202fs
HNSC	TCGA-CV-7422-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540153	187540154	Frame_Shift_Ins	-	T	p.S2529fs
HNSC	TCGA-CV-7422-01	GPM6B	ENST00000355135.2	chrX	13803740:13803927:13825768:13825888:13834962:13835188,	13825769	13825888	13825851	13825851	Frame_Shift_Del	G	-	p.H33fs
HNSC	TCGA-CV-7235-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000604555.1,ENST00000305126.8,ENST00000515433.1,ENST00000514554.1,ENST00000442011.2	chr5	135385204:135385269:135388595:135388808:135389631:135389724,	135388596	135388808	135388800	135388801	Frame_Shift_Del	CA	-	p.P373fs
HNSC	TCGA-CV-7235-01	TGFBI	ENST00000508767.1	chr5	135385127:135385269:135388706:135388808:135389631:135389724,	135388707	135388808	135388800	135388801	Frame_Shift_Del	CA	-	p.P373fs
HNSC	TCGA-CN-6024-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7797444:7797583:7797732:7797926:7798234:7798468,	7797733	7797926	7797825	7797826	Frame_Shift_Ins	-	A	p.N449fs
HNSC	TCGA-CN-4729-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412714	76412714	Frame_Shift_Del	C	-	p.S881fs
HNSC	TCGA-CN-4729-01	FHOD3	ENST00000592128.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34335081:34335274:34340570:34340745:34349227:34349389,	34340571	34340745	34340605	34340606	Frame_Shift_Ins	-	A	p.Q1312fs
HNSC	TCGA-CN-4729-01	APOL4	ENST00000332987.1,ENST00000457630.2,ENST00000429038.2,ENST00000493203.2,ENST00000449084.1,ENST00000405511.1,ENST00000419360.1	chr22	36591383:36591483:36595375:36595422:36597745:36597842,	36595376	36595422	36595382	36595392	Frame_Shift_Del	ACTGTCCAGCC	-	p.VAGQF22fs
HNSC	TCGA-CN-5366-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637575	52637576	Frame_Shift_Ins	-	TTTC	p.R882fs
HNSC	TCGA-CN-5366-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541516	187541516	Frame_Shift_Del	T	-	p.N2075fs
HNSC	TCGA-CV-A45X-01	PIBF1	ENST00000326291.6	chr13	73428194:73428293:73467921:73468087:73482668:73482819,	73467922	73468087	73467972	73467973	Frame_Shift_Ins	-	T	p.P458fs
HNSC	TCGA-D6-6826-01	CAPZA1	ENST00000476936.1,ENST00000466066.1,ENST00000263168.3	chr1	113202322:113202401:113209695:113209767:113212164:113212216,	113209696	113209767	113209755	113209758	Frame_Shift_Del	ACTA	-	p.SL215fs
HNSC	TCGA-QK-A6IG-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56482903	56482904	Frame_Shift_Ins	-	AATG	p.K1977fs
HNSC	TCGA-CV-6950-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578241	7578241	Frame_Shift_Del	A	-	p.V203fs
HNSC	TCGA-UF-A71D-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638165	176638165	Frame_Shift_Del	C	-	p.T922fs
HNSC	TCGA-UF-A71D-01	RASSF7	ENST00000454668.2,ENST00000397583.3,ENST00000344375.4,ENST00000397582.3,ENST00000431809.1	chr11	561761:561892:562078:562776:563188:563317,	562079	562776	562352	562352	Frame_Shift_Del	C	-	p.A133fs
HNSC	TCGA-UF-A71D-01	RASSF7	ENST00000414138.2	chr11	561761:561892:562083:562776:563188:563317,	562084	562776	562352	562352	Frame_Shift_Del	C	-	p.A133fs
HNSC	TCGA-UF-A71D-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579437	7579437	Frame_Shift_Del	C	-	p.A84fs
HNSC	TCGA-CV-7248-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373725	242373726	Frame_Shift_Ins	-	T	p.Q341fs
HNSC	TCGA-CV-7248-01	STRADA	ENST00000577375.1,ENST00000582030.1,ENST00000245865.5,ENST00000580338.1,ENST00000579340.1,ENST00000375840.4	chr17	61790765:61790887:61791365:61791468:61803997:61804055,	61791366	61791468	61791420	61791420	Frame_Shift_Del	C	-	p.V21fs
HNSC	TCGA-CN-A498-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577048	7577048	Frame_Shift_Del	T	-	p.H297fs
HNSC	TCGA-CN-A498-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
HNSC	TCGA-CN-4730-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637167	176637168	Frame_Shift_Del	TT	-	p.SL589fs
HNSC	TCGA-BB-8601-01	RBMS2	ENST00000262031.5,ENST00000552916.1,ENST00000550726.1,ENST00000542360.1	chr12	56975616:56975663:56975842:56975936:56980632:56980710,	56975843	56975936	56975859	56975860	Frame_Shift_Ins	-	A	p.*266fs
HNSC	TCGA-BB-8601-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576862	7576863	Frame_Shift_Ins	-	A	p.Y328fs
HNSC	TCGA-CV-7236-01	UBE2J2	ENST00000473215.1,ENST00000400929.2,ENST00000435198.1,ENST00000509720.1,ENST00000360466.2,ENST00000450390.2,ENST00000349431.6,ENST00000339385.6,ENST00000348298.7,ENST00000464036.1,ENST00000400930.4,ENST00000347370.2	chr1	1190818:1190867:1191424:1191505:1192371:1192510,	1191425	1191505	1191442	1191443	Frame_Shift_Del	AT	-	p.LF107fs
HNSC	TCGA-CV-7236-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217656	26217656	Frame_Shift_Del	C	-	p.A110fs
HNSC	TCGA-CN-6995-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576858	7576858	Frame_Shift_Del	G	-	p.L330fs
HNSC	TCGA-P3-A6SW-01	DBN1	ENST00000477391.2,ENST00000309007.5,ENST00000393565.1,ENST00000292385.5	chr5	176894255:176894333:176894481:176894628:176894743:176894818,	176894482	176894628	176894605	176894605	Frame_Shift_Del	G	-	p.A120fs
HNSC	TCGA-QK-A6II-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000504194.1,ENST00000382788.3,ENST00000338806.4	chr4	3429825:3429896:3430284:3430438:3432133:3432174,	3430285	3430438	3430399	3430399	Frame_Shift_Del	A	-	p.K1178fs
HNSC	TCGA-QK-A6II-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-QK-A6II-01	TNK1	ENST00000311668.2,ENST00000570896.1,ENST00000576812.1	chr17	7290702:7290776:7291724:7292023:7292106:7292202,	7291725	7292023	7291834	7291835	Frame_Shift_Ins	-	G	p.P530fs
HNSC	TCGA-UF-A7JF-01	HSF1	ENST00000533130.1,ENST00000532338.1,ENST00000527328.1,ENST00000400780.4,ENST00000528838.1,ENST00000534314.1	chr8	145535006:145535068:145535190:145535287:145535385:145535522,	145535191	145535287	145535256	145535257	Frame_Shift_Ins	-	G	p.R231fs
HNSC	TCGA-CN-4725-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73718322	73718322	Frame_Shift_Del	T	-	p.M3078fs
HNSC	TCGA-D6-6827-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
HNSC	TCGA-D6-6827-01	NFIB	ENST00000397581.2,ENST00000380934.4,ENST00000397579.2,ENST00000380959.3,ENST00000543693.1,ENST00000380924.1,ENST00000380953.1,ENST00000397575.3	chr9	14120438:14120623:14125630:14125765:14146687:14146806,	14125631	14125765	14125721	14125722	Frame_Shift_Del	AC	-	p.LF323fs
HNSC	TCGA-CV-5442-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2,ENST00000433205.1	chr6	109769077:109769166:109769405:109769596:109769934:109770073,	109769406	109769596	109769587	109769587	Frame_Shift_Del	T	-	p.S577fs
HNSC	TCGA-CV-A461-01	ALS2CL	ENST00000434140.1,ENST00000415953.1,ENST00000318962.4,ENST00000423707.1	chr3	46719748:46719879:46720699:46720777:46721919:46722031,	46720700	46720777	46720728	46720728	Frame_Shift_Del	A	-	p.F533fs
HNSC	TCGA-CV-A461-01	SLC25A20	ENST00000319017.4,ENST00000440964.1,ENST00000544097.1	chr3	48916790:48916881:48921429:48921557:48929412:48929505,	48921430	48921557	48921468	48921468	Frame_Shift_Del	C	-	p.G96fs
HNSC	TCGA-CV-A461-01	KCNMB3	ENST00000392686.2,ENST00000485523.1	chr3	178962282:178962481:178968530:178968722:178976735:178976996,	178968531	178968722	178968722	178968722	Frame_Shift_Del	C	-	p.R19fs
HNSC	TCGA-CV-A461-01	LSG1	ENST00000475763.1,ENST00000265245.5,ENST00000460584.1	chr3	194362901:194362976:194365301:194365475:194366892:194366972,	194365302	194365475	194365411	194365411	Frame_Shift_Del	T	-	p.Q563fs
HNSC	TCGA-CV-A461-01	NSG2	ENST00000521959.1,ENST00000521278.1,ENST00000519717.1,ENST00000303177.3,ENST00000519867.1	chr5	173491234:173491318:173531230:173531341:173534316:173534359,	173531231	173531341	173531322	173531323	Frame_Shift_Ins	-	A	p.R102fs
HNSC	TCGA-CV-A461-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638343	176638344	Frame_Shift_Ins	-	G	p.RG981fs
HNSC	TCGA-CV-A461-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000473795.1,ENST00000359206.3,ENST00000453593.1	chr7	87082259:87082451:87083850:87083908:87092073:87092224,	87083851	87083908	87083894	87083894	Frame_Shift_Del	A	-	p.S101fs
HNSC	TCGA-CV-A461-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21392398:21392494:21555919:21556060:21581734:21581928,	21555920	21556060	21556012	21556012	Frame_Shift_Del	G	-	p.G608fs
HNSC	TCGA-CV-A461-01	MMP15	ENST00000219271.3	chr16	58071444:58071524:58072169:58072298:58073778:58074086,	58072170	58072298	58072217	58072217	Frame_Shift_Del	G	-	p.R120fs
HNSC	TCGA-CV-A461-01	RIPK4	ENST00000352483.2	chr21	43171256:43171405:43176684:43176976:43187019:43187266,	43176685	43176976	43176869	43176870	Frame_Shift_Ins	-	C	p.V97fs
HNSC	TCGA-QK-A8ZB-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420547	49420565	Frame_Shift_Del	CCGTGGACCAAAGGGCACA	-	p.CALWSTE5062fs
HNSC	TCGA-BA-6872-01	PLCG2	ENST00000359376.3	chr16	81954802:81954874:81957089:81957199:81960686:81960783,	81957090	81957199	81957192	81957192	Frame_Shift_Del	G	-	p.G805fs
HNSC	TCGA-CV-5439-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576896	7576897	Frame_Shift_Ins	-	G	p.A317fs
HNSC	TCGA-DQ-7591-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18853529:18853776:18856750:18856973:18858774:18858929,	18856751	18856973	18856797	18856807	Frame_Shift_Del	GGAGTCTTCAG	-	p.LKTP2055fs
HNSC	TCGA-CR-7386-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578217	7578218	Frame_Shift_Del	GT	-	p.T211fs
HNSC	TCGA-CV-A6K1-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.K586fs
HNSC	TCGA-CV-A6K1-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048868	42048868	Frame_Shift_Del	G	-	p.P534fs
HNSC	TCGA-CV-A6K1-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183518342:183518423:183518898:183519058:183519885:183520056,	183518899	183519058	183518987	183518987	Frame_Shift_Del	C	-	p.A1004fs
HNSC	TCGA-CV-A6K1-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
HNSC	TCGA-CV-A6K1-01	AOX1	ENST00000485965.1,ENST00000374700.2	chr2	201476106:201476216:201477331:201477516:201478526:201478689,	201477332	201477516	201477409	201477410	Frame_Shift_Ins	-	T	p.VF447fs
HNSC	TCGA-CV-A6K1-01	ACSL3	ENST00000392066.3,ENST00000357430.3	chr2	223791734:223791907:223793579:223793654:223795338:223795530,	223793580	223793654	223793637	223793638	Frame_Shift_Ins	-	A	p.*508fs
HNSC	TCGA-CV-A6K1-01	ATP13A3	ENST00000256031.4,ENST00000439040.1,ENST00000429136.1	chr3	194134542:194134568:194140607:194140696:194146070:194146099,	194140608	194140696	194140669	194140669	Frame_Shift_Del	A	-	p.L1114fs
HNSC	TCGA-CV-A6K1-01	RAC1	ENST00000356142.4	chr7	6431554:6431672:6438292:6438349:6439756:6439819,	6438293	6438349	6438326	6438327	Frame_Shift_Ins	-	G	p.G87fs
HNSC	TCGA-CV-A6K1-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198752	20198752	Frame_Shift_Del	T	-	p.N411fs
HNSC	TCGA-CV-A6K1-01	DGKI	ENST00000446122.1,ENST00000424189.2,ENST00000288490.5	chr7	137096915:137096953:137128822:137128848:137148234:137148357,	137128823	137128848	137128838	137128838	Frame_Shift_Del	A	-	p.S594fs
HNSC	TCGA-CV-A6K1-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000544260.1,ENST00000521772.1,ENST00000381869.3,ENST00000262102.6,ENST00000518713.1,ENST00000381861.3,ENST00000517413.1	chr8	17512072:17512175:17513371:17513574:17532694:17532761,	17513372	17513574	17513519	17513522	Frame_Shift_Del	TGTT	-	p.QT932fs
HNSC	TCGA-CV-A6K1-01	RIPK2	ENST00000220751.4,ENST00000522965.1,ENST00000540020.1	chr8	90777568:90777724:90781999:90782157:90783968:90784018,	90782000	90782157	90782147	90782148	Frame_Shift_Ins	-	AT	p.Y211fs
HNSC	TCGA-CV-A6K1-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282886	47282887	Frame_Shift_Ins	-	C	p.SP198fs
HNSC	TCGA-CV-A6K1-01	FADS2	ENST00000517312.1	chr11	61595650:61595696:61595966:61596069:61605249:61605360,	61595967	61596069	61596024	61596024	Frame_Shift_Del	G	-	p.P54fs
HNSC	TCGA-CV-A6K1-01	MRPL21	ENST00000565125.1,ENST00000362034.2,ENST00000541279.1,ENST00000567045.1,ENST00000450904.2	chr11	68660870:68660923:68663982:68664146:68665394:68665480,	68663983	68664146	68664141	68664141	Frame_Shift_Del	C	-	p.V80fs
HNSC	TCGA-CV-A6K1-01	MRPL21	ENST00000541265.1	chr11	68660870:68660923:68663936:68664146:68665394:68665480,	68663937	68664146	68664141	68664141	Frame_Shift_Del	C	-	p.V80fs
HNSC	TCGA-CV-A6K1-01	MRPL21	ENST00000544567.1	chr11	68660870:68660923:68663982:68664306:68665394:68665480,	68663983	68664306	68664141	68664141	Frame_Shift_Del	C	-	p.V80fs
HNSC	TCGA-CV-A6K1-01	DCP1B	ENST00000280665.6,ENST00000397173.4,ENST00000543381.1,ENST00000536665.1,ENST00000540622.1	chr12	2061942:2062454:2064597:2064726:2074723:2074859,	2064598	2064726	2064701	2064701	Frame_Shift_Del	T	-	p.K183fs
HNSC	TCGA-CV-A6K1-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462268	5462268	Frame_Shift_Del	T	-	p.K583fs
HNSC	TCGA-CV-A6K1-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562741	14562741	Frame_Shift_Del	C	-	p.R357fs
HNSC	TCGA-CV-A6K1-01	LPAR2	ENST00000407877.3	chr19	19734477:19735378:19737351:19738093:19738900:19738976,	19737352	19738093	19737403	19737403	Frame_Shift_Del	G	-	p.R231fs
HNSC	TCGA-CV-A6K1-01	MAGED1	ENST00000375695.2	chrX	51637371:51637445:51637722:51637890:51638148:51638340,	51637723	51637890	51637752	51637752	Frame_Shift_Del	C	-	p.H25fs
HNSC	TCGA-CV-6954-01	ITSN2	ENST00000361999.3	chr2	24494673:24494810:24498581:24498718:24509080:24509220,	24498582	24498718	24498605	24498606	Frame_Shift_Ins	-	T	p.K686fs
HNSC	TCGA-CV-6961-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169037	33169037	Frame_Shift_Del	G	-	p.L5fs
HNSC	TCGA-CV-6003-01	RBM5	ENST00000395174.2,ENST00000347869.3,ENST00000474818.1,ENST00000496179.1	chr3	50142981:50143142:50144199:50144297:50144914:50145002,	50144200	50144297	50144226	50144227	Frame_Shift_Del	AC	-	p.LQ294fs
HNSC	TCGA-CV-6003-01	TP63	ENST00000418709.2,ENST00000320472.5,ENST00000440651.2,ENST00000392460.3,ENST00000264731.3	chr3	189507589:189507631:189526060:189526315:189582020:189582057,189456430:189456563:189526060:189526315:189582020:189582057,	189526061	189526315	189526228	189526229	Frame_Shift_Ins	-	A	p.P165fs
HNSC	TCGA-WA-A7H4-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
HNSC	TCGA-CN-6988-01	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000473086.2,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42490267:42490381:42492087:42492291:42492469:42492529,	42492088	42492291	42492178	42492179	Frame_Shift_Ins	-	C	p.V102fs
HNSC	TCGA-D6-6825-01	SEC24B	ENST00000265175.5,ENST00000504968.2,ENST00000399100.2	chr4	110451444:110451620:110452540:110452678:110453794:110453899,	110452541	110452678	110452620	110452620	Frame_Shift_Del	T	-	p.V1111fs
HNSC	TCGA-D6-A6EO-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578262	7578277	Frame_Shift_Del	CGGATAAGATGCTGAG	-	p.PQHLIR191fs
HNSC	TCGA-CV-A6JD-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557023	214557023	Frame_Shift_Del	G	-	p.P725fs
HNSC	TCGA-CV-A6JD-01	CYP11B1	ENST00000377675.3	chr8	143960447:143960603:143960761:143960896:143960990:143961236,	143960762	143960896	143960853	143960854	Frame_Shift_Ins	-	TGCA	p.T95fs
HNSC	TCGA-CV-A6JD-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53240678:53240837:53240968:53241088:53243870:53244029,	53240969	53241088	53241082	53241083	Frame_Shift_Ins	-	A	p.*A309fs
HNSC	TCGA-HD-8224-01	PLEKHN1	ENST00000379409.2,ENST00000379407.3,ENST00000379410.3	chr1	907454:907530:907667:907804:908240:908390,	907668	907804	907763	907764	Frame_Shift_Ins	-	C	p.P373fs
HNSC	TCGA-HD-8224-01	LEPR	ENST00000344610.8,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66075629:66075789:66075896:66075979:66081690:66081907,	66075897	66075979	66075955	66075956	Frame_Shift_Ins	-	A	p.EK657fs
HNSC	TCGA-HD-8224-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-P3-A5Q6-01	NRF1	ENST00000223190.4,ENST00000393231.3,ENST00000393230.2,ENST00000539636.1,ENST00000311967.2,ENST00000393232.1	chr7	129348914:129349073:129350213:129350411:129351314:129351416,	129350214	129350411	129350403	129350404	Frame_Shift_Ins	-	T	p.Y319fs
HNSC	TCGA-P3-A5QF-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12039670:12039756:12041904:12042008:12043674:12043824,	12041905	12042008	12041994	12041994	Frame_Shift_Del	C	-	p.E557fs
HNSC	TCGA-CN-5355-01	NR4A2	ENST00000409572.1,ENST00000539077.1,ENST00000426264.1,ENST00000339562.4	chr2	157182255:157182512:157182661:157182840:157183229:157183432,	157182662	157182840	157182714	157182715	Frame_Shift_Ins	-	A	p.K496fs
HNSC	TCGA-CN-5355-01	NR4A2	ENST00000417764.1,ENST00000417972.1	chr2	157182255:157182512:157182661:157182719:157183229:157183432,	157182662	157182719	157182714	157182715	Frame_Shift_Ins	-	A	p.K496fs
HNSC	TCGA-CN-5355-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413874	43413875	Frame_Shift_Ins	-	C	p.GF110fs
HNSC	TCGA-CR-7372-01	MTO1	ENST00000370300.4,ENST00000498286.1,ENST00000415228.1,ENST00000370308.4,ENST00000462039.1	chr6	74171517:74171794:74175931:74176131:74176211:74176329,	74175932	74176131	74176036	74176037	Frame_Shift_Ins	-	GT	p.C108fs
HNSC	TCGA-CR-7372-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579450	7579451	Frame_Shift_Ins	-	G	p.A79fs
HNSC	TCGA-P3-A6T5-01	PDCD2	ENST00000167218.5	chr6	170886681:170886805:170887944:170888058:170892144:170892276,	170887945	170888058	170888047	170888048	Frame_Shift_Ins	-	T	p.W258fs
HNSC	TCGA-P3-A6T5-01	ELP5	ENST00000570322.1,ENST00000396627.2,ENST00000573699.1,ENST00000574993.1,ENST00000354429.2,ENST00000573513.1,ENST00000576496.1,ENST00000356683.2,ENST00000396628.2	chr17	7156236:7156317:7157901:7158122:7160175:7160347,	7157902	7158122	7157966	7157966	Frame_Shift_Del	G	-	p.G102fs
HNSC	TCGA-P3-A6T5-01	ELP5	ENST00000571146.1	chr17	7156236:7156317:7157901:7158085:7160175:7160347,	7157902	7158085	7157966	7157966	Frame_Shift_Del	G	-	p.G102fs
HNSC	TCGA-P3-A6T5-01	MAP3K15	ENST00000359173.3,ENST00000518578.1,ENST00000338883.4,ENST00000469203.2	chrX	19413198:19413326:19416343:19416477:19418693:19418781,	19416344	19416477	19416433	19416433	Frame_Shift_Del	C	-	p.G659fs
HNSC	TCGA-CR-6478-01	MAMDC4	ENST00000317446.2,ENST00000485732.1,ENST00000445819.1	chr9	139753170:139753305:139753456:139753584:139753660:139753769,	139753457	139753584	139753544	139753545	Frame_Shift_Ins	-	G	p.R1094fs
HNSC	TCGA-CR-6478-01	MAMDC4	ENST00000479475.1	chr9	139752851:139752998:139753170:139753584:139753660:139753769,	139753171	139753584	139753544	139753545	Frame_Shift_Ins	-	G	p.R1094fs
HNSC	TCGA-F7-A624-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
HNSC	TCGA-F7-A624-01	SLC25A33	ENST00000302692.6	chr1	9613683:9613863:9627341:9627419:9630315:9630416,	9627342	9627419	9627374	9627374	Frame_Shift_Del	T	-	p.L90fs
HNSC	TCGA-F7-A624-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P461fs
HNSC	TCGA-F7-A624-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812017	59812017	Frame_Shift_Del	G	-	p.G139fs
HNSC	TCGA-F7-A624-01	IFI44L	ENST00000450498.1	chr1	79094635:79094684:79095404:79095600:79101021:79101174,79094635:79094684:79095404:79095600:79095677:79095872,	79095405	79095600	79095512	79095513	Frame_Shift_Ins	-	T	p.I212fs
HNSC	TCGA-F7-A624-01	RPAP2	ENST00000477322.1,ENST00000610020.1	chr1	92811402:92811471:92846280:92846430:92852567:92852790,	92846281	92846430	92846371	92846371	Frame_Shift_Del	A	-	p.L593fs
HNSC	TCGA-F7-A624-01	CREB3L4	ENST00000449724.1,ENST00000461688.1,ENST00000368600.3	chr1	153940997:153941175:153941405:153941652:153941809:153941931,153941000:153941115:153941405:153941652:153941809:153941931,	153941406	153941652	153941609	153941609	Frame_Shift_Del	G	-	p.Q126fs
HNSC	TCGA-F7-A624-01	CREB3L4	ENST00000492729.1	chr1	153941000:153941115:153941405:153941931:153945219:153945244,	153941406	153941931	153941609	153941609	Frame_Shift_Del	G	-	p.Q126fs
HNSC	TCGA-F7-A624-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761536	156761536	Frame_Shift_Del	C	-	p.V377fs
HNSC	TCGA-F7-A624-01	CCDC181	ENST00000367806.3	chr1	169364284:169364444:169366474:169366629:169388250:169388397,	169366475	169366629	169366580	169366580	Frame_Shift_Del	T	-	p.K421fs
HNSC	TCGA-F7-A624-01	CCDC181	ENST00000545005.1,ENST00000367805.3	chr1	169364284:169364444:169366474:169366626:169388250:169388397,	169366475	169366626	169366580	169366580	Frame_Shift_Del	T	-	p.K421fs
HNSC	TCGA-F7-A624-01	TP53BP2	ENST00000473135.1,ENST00000343537.7	chr1	223998165:223998215:224001941:224002055:224008921:224009069,	224001942	224002055	224001956	224001956	Frame_Shift_Del	G	-	p.P92fs
HNSC	TCGA-F7-A624-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371608	240371608	Frame_Shift_Del	C	-	p.P1167fs
HNSC	TCGA-F7-A624-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650549	71650549	Frame_Shift_Del	A	-	p.E1302fs
HNSC	TCGA-F7-A624-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232795	99232795	Frame_Shift_Del	T	-	p.L193fs
HNSC	TCGA-F7-A624-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086477	109086477	Frame_Shift_Del	A	-	p.Q231fs
HNSC	TCGA-F7-A624-01	DYNC1I2	ENST00000412370.1,ENST00000410079.3,ENST00000438879.1,ENST00000456808.1,ENST00000358002.6,ENST00000411953.1,ENST00000423910.1	chr2	172546656:172546773:172549286:172549404:172571837:172571860,172546656:172546773:172549286:172549404:172563796:172563887,172546656:172546773:172549286:172549404:172563742:172563887,	172549287	172549404	172549339	172549339	Frame_Shift_Del	A	-	p.E54fs
HNSC	TCGA-F7-A624-01	TNS1	ENST00000430930.1,ENST00000446688.1	chr2	218686462:218686661:218696177:218696270:218699813:218699889,	218696178	218696270	218696257	218696258	Frame_Shift_Ins	-	G	p.R973fs
HNSC	TCGA-F7-A624-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
HNSC	TCGA-F7-A624-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
HNSC	TCGA-F7-A624-01	ING5	ENST00000492488.1,ENST00000482774.1,ENST00000406941.1,ENST00000313552.6,ENST00000489509.1	chr2	242648630:242648797:242650791:242650903:242651392:242651486,	242650792	242650903	242650899	242650899	Frame_Shift_Del	A	-	p.L128fs
HNSC	TCGA-F7-A624-01	APEH	ENST00000296456.5,ENST00000469362.2,ENST00000438011.1	chr3	49719154:49719238:49719319:49719400:49719780:49719869,	49719320	49719400	49719325	49719325	Frame_Shift_Del	C	-	p.P510fs
HNSC	TCGA-F7-A624-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005145	50005145	Frame_Shift_Del	G	-	p.R96fs
HNSC	TCGA-F7-A624-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005145	50005145	Frame_Shift_Del	G	-	p.R96fs
HNSC	TCGA-F7-A624-01	IL17RB	ENST00000475124.1,ENST00000288167.3	chr3	53886897:53887024:53889320:53889368:53890870:53891004,	53889321	53889368	53889347	53889347	Frame_Shift_Del	A	-	p.K172fs
HNSC	TCGA-F7-A624-01	TFRC	ENST00000392396.3,ENST00000540528.1,ENST00000420415.1,ENST00000535031.1,ENST00000360110.4	chr3	195794902:195795001:195796325:195796439:195798266:195798369,	195796326	195796439	195796404	195796404	Frame_Shift_Del	T	-	p.K241fs
HNSC	TCGA-F7-A624-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196083507:196083717:196088714:196088794:196089164:196089415,	196088715	196088794	196088753	196088753	Frame_Shift_Del	T	-	p.R424fs
HNSC	TCGA-F7-A624-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409fs
HNSC	TCGA-F7-A624-01	TNIP3	ENST00000507879.1,ENST00000057513.3,ENST00000509841.1,ENST00000515605.1,ENST00000511909.1,ENST00000454328.1	chr4	122063880:122063931:122068203:122068329:122071257:122071270,	122068204	122068329	122068279	122068280	Frame_Shift_Del	TC	-	p.R220fs
HNSC	TCGA-F7-A624-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.K613fs
HNSC	TCGA-F7-A624-01	TMA16	ENST00000508268.1,ENST00000513134.1,ENST00000358572.5,ENST00000513272.1	chr4	164415859:164415956:164428184:164428297:164433973:164434011,	164428185	164428297	164428284	164428285	Frame_Shift_Ins	-	A	p.K35fs
HNSC	TCGA-F7-A624-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247869	55247869	Frame_Shift_Del	T	-	p.K529fs
HNSC	TCGA-F7-A624-01	ERAP1	ENST00000296754.3,ENST00000443439.2	chr5	96116761:96116902:96117396:96117558:96118754:96118939,	96117397	96117558	96117518	96117518	Frame_Shift_Del	C	-	p.A776fs
HNSC	TCGA-F7-A624-01	PANK3	ENST00000239231.6,ENST00000520504.1	chr5	167984615:167984626:167986036:167986162:167988397:167988521,	167986037	167986162	167986153	167986156	Frame_Shift_Del	TGTT	-	p.NR315fs
HNSC	TCGA-F7-A624-01	DOCK2	ENST00000256935.8,ENST00000524185.1	chr5	169111199:169111354:169116255:169116337:169122806:169122942,	169116256	169116337	169116296	169116296	Frame_Shift_Del	A	-	p.K268fs
HNSC	TCGA-F7-A624-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000427908.2	chr5	176737426:176737541:176738379:176738485:176738761:176738858,176737668:176737698:176738379:176738485:176738761:176738871,	176738380	176738485	176738407	176738408	Frame_Shift_Ins	-	G	p.G50fs
HNSC	TCGA-F7-A624-01	PDLIM7	ENST00000393551.1,ENST00000356618.4	chr5	176915068:176915249:176916393:176916628:176917870:176917907,	176916394	176916628	176916445	176916445	Frame_Shift_Del	C	-	p.G273fs
HNSC	TCGA-F7-A624-01	DEK	ENST00000505224.1	chr6	18258587:18258636:18264073:18264227:18264615:18264766,	18264074	18264227	18264188	18264188	Frame_Shift_Del	C	-	p.E11fs
HNSC	TCGA-F7-A624-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30610544:30610788:30613671:30613751:30613843:30613886,	30613672	30613751	30613721	30613721	Frame_Shift_Del	G	-	p.G329fs
HNSC	TCGA-F7-A624-01	TREM1	ENST00000244709.4	chr6	41235663:41235826:41248698:41248891:41250132:41250489,41243921:41243968:41248698:41248891:41250132:41250489,	41248699	41248891	41248876	41248876	Frame_Shift_Del	G	-	p.P141fs
HNSC	TCGA-F7-A624-01	RPF2	ENST00000441448.2	chr6	111303252:111303332:111306208:111306341:111310230:111310268,	111306209	111306341	111306297	111306297	Frame_Shift_Del	G	-	p.G39fs
HNSC	TCGA-F7-A624-01	GALNT11	ENST00000430044.2	chr7	151722835:151722969:151791274:151791607:151797882:151798006,	151791275	151791607	151791468	151791468	Frame_Shift_Del	A	-	p.P52fs
HNSC	TCGA-F7-A624-01	FBXO25	ENST00000382824.1,ENST00000352684.2	chr8	363072:363213:381340:381444:385614:385700,	381341	381444	381399	381399	Frame_Shift_Del	A	-	p.R14fs
HNSC	TCGA-F7-A624-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623865	623865	Frame_Shift_Del	T	-	p.R163fs
HNSC	TCGA-F7-A624-01	SPAG11A	ENST00000326558.5	chr8	7706212:7706365:7718167:7718245:7721022:7721319,	7718168	7718245	7718228	7718228	Frame_Shift_Del	T	-	p.L92fs
HNSC	TCGA-F7-A624-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56708536:56708711:56711472:56711779:56715015:56715165,	56711473	56711779	56711599	56711599	Frame_Shift_Del	A	-	p.K558fs
HNSC	TCGA-F7-A624-01	LYN	ENST00000520050.1,ENST00000520220.2,ENST00000519728.1	chr8	56860176:56860282:56863017:56863116:56863239:56863307,	56863018	56863116	56863054	56863054	Frame_Shift_Del	A	-	p.T86fs
HNSC	TCGA-F7-A624-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631857	116631857	Frame_Shift_Del	G	-	p.P156fs
HNSC	TCGA-F7-A624-01	ARHGAP39	ENST00000276826.5,ENST00000540274.1	chr8	145780943:145781027:145806229:145806661:145830919:145831080,	145806230	145806661	145806259	145806277	Frame_Shift_Del	CGCCGCGGGCCGCCCGGCC	-	p.RAGRPAA155fs
HNSC	TCGA-F7-A624-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19290755:19290874:19296005:19296244:19298053:19298120,	19296006	19296244	19296163	19296164	Frame_Shift_Ins	-	T	p.L84fs
HNSC	TCGA-F7-A624-01	FKTN	ENST00000223528.2,ENST00000602526.1,ENST00000602661.1,ENST00000457847.1,ENST00000448551.2,ENST00000357998.5	chr9	108380239:108380373:108382214:108382342:108397331:108397429,	108382215	108382342	108382270	108382270	Frame_Shift_Del	T	-	p.V367fs
HNSC	TCGA-F7-A624-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12009339:12009453:12021055:12021164:12039670:12039756,	12021056	12021164	12021070	12021070	Frame_Shift_Del	C	-	p.D647fs
HNSC	TCGA-F7-A624-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.P25fs
HNSC	TCGA-F7-A624-01	ZSWIM8	ENST00000604754.1,ENST00000603114.1,ENST00000603187.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000431225.1,ENST00000604524.1,ENST00000605216.1,ENST00000604729.1	chr10	75552516:75552610:75553345:75553477:75553622:75553802,	75553346	75553477	75553466	75553466	Frame_Shift_Del	C	-	p.P813fs
HNSC	TCGA-F7-A624-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R184fs
HNSC	TCGA-F7-A624-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292810	98292810	Frame_Shift_Del	T	-	p.K441fs
HNSC	TCGA-F7-A624-01	NT5C2	ENST00000369857.4,ENST00000343289.5,ENST00000423468.2,ENST00000404739.3	chr10	104855695:104855737:104857047:104857131:104858687:104858741,	104857048	104857131	104857078	104857081	Frame_Shift_Del	AAGA	-	p.FL246fs
HNSC	TCGA-F7-A624-01	BAG3	ENST00000450186.1	chr10	121429362:121429689:121431766:121432168:121435975:121437331,121429362:121429689:121431766:121432168:121435978:121436219,	121431767	121432168	121431867	121431867	Frame_Shift_Del	G	-	p.R203fs
HNSC	TCGA-F7-A624-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268066	1268066	Frame_Shift_Del	C	-	p.T3322fs
HNSC	TCGA-F7-A624-01	AGBL2	ENST00000357610.3,ENST00000298861.4,ENST00000528609.1,ENST00000525123.1	chr11	47681144:47681898:47684577:47684664:47688507:47688615,	47684578	47684664	47684631	47684631	Frame_Shift_Del	G	-	p.L828fs
HNSC	TCGA-F7-A624-01	RECQL	ENST00000421138.2,ENST00000444129.2	chr12	21622735:21623280:21623902:21624032:21624361:21624581,	21623903	21624032	21623985	21623986	Frame_Shift_Ins	-	TT	p.R572fs
HNSC	TCGA-F7-A624-01	NR4A1	ENST00000394825.1	chr12	52435593:52435713:52448110:52448988:52449813:52449935,52445246:52445352:52448110:52448988:52449813:52449935,	52448111	52448988	52448248	52448249	Frame_Shift_Ins	-	C	p.P100fs
HNSC	TCGA-F7-A624-01	NR4A1	ENST00000550763.1	chr12	52445246:52445352:52448110:52448435:52449813:52449935,	52448111	52448435	52448248	52448249	Frame_Shift_Ins	-	C	p.P100fs
HNSC	TCGA-F7-A624-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56561843:56561978:56563312:56563479:56563559:56563695,	56563313	56563479	56563405	56563405	Frame_Shift_Del	C	-	p.E875fs
HNSC	TCGA-F7-A624-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108338	102108338	Frame_Shift_Del	T	-	p.F162fs
HNSC	TCGA-F7-A624-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277435:122277744:122277837:122277954:122281615:122281738,	122277838	122277954	122277894	122277895	Frame_Shift_Ins	-	T	p.NG299fs
HNSC	TCGA-F7-A624-01	RFC3	ENST00000380071.3,ENST00000434425.1	chr13	34398053:34398121:34399925:34400023:34403972:34404154,	34399926	34400023	34399981	34399982	Frame_Shift_Ins	-	A	p.I117fs
HNSC	TCGA-F7-A624-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546604	21546604	Frame_Shift_Del	G	-	p.G736fs
HNSC	TCGA-F7-A624-01	NEMF	ENST00000555970.1,ENST00000545773.1,ENST00000556925.1,ENST00000298310.5	chr14	50269954:50270012:50272738:50272851:50280705:50280768,	50272739	50272851	50272836	50272836	Frame_Shift_Del	G	-	p.P587fs
HNSC	TCGA-F7-A624-01	MTHFD1	ENST00000553405.1,ENST00000545908.1,ENST00000216605.8	chr14	64914934:64915035:64916162:64916340:64920471:64920525,	64916163	64916340	64916254	64916254	Frame_Shift_Del	G	-	p.G792fs
HNSC	TCGA-F7-A624-01	NUMB	ENST00000555238.1,ENST00000554315.1,ENST00000555307.1,ENST00000557597.1,ENST00000554521.2,ENST00000356296.4,ENST00000559312.1,ENST00000454166.4,ENST00000544991.3,ENST00000556989.1,ENST00000359560.3,ENST00000555859.1,ENST00000555738.2,ENST00000555394.1,ENST00000554394.1,ENST00000355058.3,ENST00000535282.1,ENST00000554546.1,ENST00000560335.1,ENST00000556772.1	chr14	73753817:73754022:73759441:73759582:73763918:73763993,	73759442	73759582	73759555	73759558	Frame_Shift_Del	TCTC	-	p.EK101fs
HNSC	TCGA-F7-A624-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
HNSC	TCGA-F7-A624-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
HNSC	TCGA-F7-A624-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
HNSC	TCGA-F7-A624-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
HNSC	TCGA-F7-A624-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
HNSC	TCGA-F7-A624-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
HNSC	TCGA-F7-A624-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
HNSC	TCGA-F7-A624-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820641	3820641	Frame_Shift_Del	G	-	p.P937fs
HNSC	TCGA-F7-A624-01	NDE1	ENST00000396354.1,ENST00000396353.2,ENST00000574109.1,ENST00000577101.1,ENST00000342673.5,ENST00000396355.1	chr16	15781283:15781368:15785000:15785180:15788021:15788113,	15785001	15785180	15785048	15785049	Frame_Shift_Ins	-	C	p.P191fs
HNSC	TCGA-F7-A624-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.AK201fs
HNSC	TCGA-F7-A624-01	PITPNA	ENST00000575895.1,ENST00000576761.1,ENST00000539476.1,ENST00000576010.2,ENST00000575288.1,ENST00000573056.1,ENST00000313486.7,ENST00000573231.1	chr17	1451589:1451681:1456297:1456443:1461822:1461853,	1456298	1456443	1456400	1456400	Frame_Shift_Del	T	-	p.N32fs
HNSC	TCGA-F7-A624-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232949	19232950	Frame_Shift_Ins	-	A	p.*467fs
HNSC	TCGA-F7-A624-01	LUC7L3	ENST00000504563.2,ENST00000508045.1,ENST00000240304.1,ENST00000507200.1,ENST00000544170.1,ENST00000505658.1,ENST00000508482.1,ENST00000507503.1,ENST00000393227.2	chr17	48818462:48818607:48819017:48819092:48821066:48821153,	48819018	48819092	48819046	48819046	Frame_Shift_Del	A	-	p.E127fs
HNSC	TCGA-F7-A624-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367677	66367677	Frame_Shift_Del	T	-	p.K119fs
HNSC	TCGA-F7-A624-01	BCL2L12	ENST00000246784.3,ENST00000598979.1,ENST00000246785.3,ENST00000441864.2	chr19	50172304:50172372:50173472:50173745:50176954:50177116,	50173473	50173745	50173670	50173670	Frame_Shift_Del	G	-	p.L293fs
HNSC	TCGA-F7-A624-01	SLC23A2	ENST00000468355.1,ENST00000338244.1,ENST00000379333.1,ENST00000496331.1	chr20	4855221:4855342:4864287:4864469:4865398:4865469,	4864288	4864469	4864378	4864378	Frame_Shift_Del	A	-	p.L245fs
HNSC	TCGA-F7-A624-01	ZNF133	ENST00000535822.1	chr20	18269177:18269248:18286962:18287037:18295712:18295750,	18286963	18287037	18287008	18287008	Frame_Shift_Del	A	-	p.E63fs
HNSC	TCGA-F7-A624-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3	chr20	37174885:37175073:37177331:37177438:37179713:37179866,	37177332	37177438	37177336	37177336	Frame_Shift_Del	T	-	p.D969fs
HNSC	TCGA-F7-A624-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622210	24622210	Frame_Shift_Del	C	-	p.E355fs
HNSC	TCGA-F7-A624-01	SUN2	ENST00000406622.1,ENST00000405018.1,ENST00000469086.1,ENST00000477262.1,ENST00000216064.4,ENST00000411587.2,ENST00000405510.1	chr22	39135346:39135431:39135726:39135948:39136271:39136437,	39135727	39135948	39135892	39135893	Frame_Shift_Ins	-	C	p.A471fs
HNSC	TCGA-F7-A624-01	XRCC6	ENST00000405878.1,ENST00000360079.3,ENST00000359308.4	chr22	42018000:42018090:42024121:42024234:42032116:42032255,	42024122	42024234	42024155	42024155	Frame_Shift_Del	T	-	p.I39fs
HNSC	TCGA-F7-A624-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A94fs
HNSC	TCGA-F7-A624-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17746019	17746019	Frame_Shift_Del	A	-	p.K1244fs
HNSC	TCGA-CX-7082-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676319	53676319	Frame_Shift_Del	C	-	p.L325fs
HNSC	TCGA-CX-7082-01	SURF2	ENST00000371964.4	chr9	136226825:136227005:136227140:136227310:136227931:136228045,	136227141	136227310	136227265	136227266	Frame_Shift_Del	GA	-	p.RR214fs
HNSC	TCGA-CX-7082-01	SERPIND1	ENST00000215727.5,ENST00000406799.1	chr22	21133783:21134489:21138259:21138533:21140291:21140436,	21138260	21138533	21138419	21138420	Frame_Shift_Ins	-	G	p.G350fs
HNSC	TCGA-CX-7082-01	MEI1	ENST00000401548.3,ENST00000484966.1,ENST00000476893.1,ENST00000487535.1,ENST00000400107.1	chr22	42190374:42190481:42191414:42191546:42191738:42191777,	42191415	42191546	42191530	42191531	Frame_Shift_Ins	-	T	p.R1217fs
HNSC	TCGA-CN-6996-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118887049	118887049	Frame_Shift_Del	T	-	p.K221fs
HNSC	TCGA-QK-A652-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465981	59465981	Frame_Shift_Del	A	-	p.K890fs
HNSC	TCGA-CV-7242-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113351810	113351811	Frame_Shift_Ins	-	G	p.QG369fs
HNSC	TCGA-CV-7242-01	TMEM170B	ENST00000379426.1,ENST00000543875.1	chr6	11538510:11538607:11565898:11566069:11575663:11575876,	11565899	11566069	11565999	11565999	Frame_Shift_Del	G	-	p.Q66fs
HNSC	TCGA-CV-7242-01	DPF2	ENST00000532052.1,ENST00000528416.1,ENST00000252268.4	chr11	65113400:65113529:65113717:65113830:65116320:65116402,	65113718	65113830	65113793	65113793	Frame_Shift_Del	G	-	p.C327fs
HNSC	TCGA-TN-A7HL-01	ADAM19	ENST00000517374.1	chr5	156904311:156904743:156908798:156908951:156915272:156915497,	156908799	156908951	156908825	156908825	Frame_Shift_Del	G	-	p.R893fs
HNSC	TCGA-BA-4077-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
HNSC	TCGA-BA-4077-01	LRPPRC	ENST00000260665.7	chr2	44173251:44173382:44174395:44174509:44174869:44174914,	44174396	44174509	44174430	44174430	Frame_Shift_Del	A	-	p.L682fs
HNSC	TCGA-BA-4077-01	ARHGAP15	ENST00000549436.1,ENST00000295095.6	chr2	144313976:144314054:144381701:144381836:144460987:144461093,	144381702	144381836	144381721	144381727	Frame_Shift_Del	CGACAGC	-	p.DDS341fs
HNSC	TCGA-BA-4077-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107492152	107492152	Frame_Shift_Del	G	-	p.K530fs
HNSC	TCGA-BA-4077-01	NRIP3	ENST00000525100.1	chr11	9009094:9009177:9009664:9009808:9025308:9025548,	9009665	9009808	9009738	9009744	Frame_Shift_Del	TTCGTCT	-	p.KTN87fs
HNSC	TCGA-BA-4077-01	NRIP3	ENST00000531090.1	chr11	9009094:9009177:9009664:9009829:9025308:9025548,	9009665	9009829	9009738	9009744	Frame_Shift_Del	TTCGTCT	-	p.KTN87fs
HNSC	TCGA-CV-A6JZ-01	PTCH2	ENST00000372192.3,ENST00000447098.2	chr1	45294828:45294984:45295073:45295205:45295285:45295433,	45295074	45295205	45295175	45295184	Frame_Shift_Del	AAGCGTTCTC	-	p.ENAS369fs
HNSC	TCGA-CN-5365-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514642	169514643	Frame_Shift_Del	AG	-	p.HC234fs
HNSC	TCGA-CN-5365-01	RASGRP1	ENST00000558432.1,ENST00000310803.5,ENST00000450598.2,ENST00000561180.1,ENST00000539159.1,ENST00000414708.2	chr15	38782754:38782889:38786582:38786968:38790994:38791147,	38786583	38786968	38786881	38786881	Frame_Shift_Del	C	-	p.G654fs
HNSC	TCGA-CN-5365-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057317	30057318	Frame_Shift_Ins	-	GT	p.*267fs
HNSC	TCGA-CV-6934-01	MAK	ENST00000536370.1,ENST00000474039.1	chr6	10819118:10819173:10830780:10831110:10838735:10838752,	10830781	10831110	10830857	10830857	Frame_Shift_Del	G	-	p.Q9fs
HNSC	TCGA-CV-5977-01	FOSB	ENST00000417353.2	chr19	45971692:45971970:45973886:45974207:45975808:45975811,	45973887	45974207	45974012	45974013	Frame_Shift_Ins	-	C	p.A85fs
HNSC	TCGA-CN-4731-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924382	150924382	Frame_Shift_Del	A	-	p.N2102fs
HNSC	TCGA-CN-4731-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384892	124384893	Frame_Shift_Ins	-	T	p.R119fs
HNSC	TCGA-CR-7388-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2,ENST00000425511.1	chr13	75923305:75923438:75930282:75930387:75933904:75933994,	75930283	75930387	75930347	75930348	Frame_Shift_Ins	-	C	p.V404fs
HNSC	TCGA-CR-7388-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9258619	9258619	Frame_Shift_Del	G	-	p.R1762fs
HNSC	TCGA-F7-8489-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542091	187542092	Frame_Shift_Ins	-	A	p.L1883fs
HNSC	TCGA-CV-7255-01	STIL	ENST00000371877.3,ENST00000360380.3,ENST00000337817.5,ENST00000396221.2,ENST00000243182.6	chr1	47716293:47717594:47725960:47726211:47728574:47728734,	47725961	47726211	47726187	47726202	Frame_Shift_Del	TATTTAATAGGTGGTT	-	p.NHLLNS946fs
HNSC	TCGA-CV-7255-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727094	137727097	Frame_Shift_Del	GAAA	-	p.RK591fs
HNSC	TCGA-CV-7255-01	MMP15	ENST00000219271.3	chr16	58077113:58077264:58077415:58077531:58078910:58080805,	58077416	58077531	58077474	58077475	Frame_Shift_Ins	-	G	p.C505fs
HNSC	TCGA-CR-7380-01	SDC1	ENST00000381150.1,ENST00000403076.1	chr2	20403912:20404052:20405103:20405185:20424562:20424847,	20405104	20405185	20405159	20405160	Frame_Shift_Ins	-	G	p.R31fs
HNSC	TCGA-CR-7380-01	PIBF1	ENST00000326291.6	chr13	73428194:73428293:73467921:73468087:73482668:73482819,	73467922	73468087	73468075	73468076	Frame_Shift_Ins	-	A	p.QK492fs
HNSC	TCGA-DQ-5625-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048048	42048048	Frame_Shift_Del	C	-	p.E807fs
HNSC	TCGA-DQ-5625-01	CNOT10	ENST00000538368.1,ENST00000463697.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000455381.1	chr3	32757716:32757803:32758645:32758729:32761605:32761723,	32758646	32758729	32758664	32758665	Frame_Shift_Ins	-	T	p.P227fs
HNSC	TCGA-DQ-5625-01	PLAG1	ENST00000522009.1,ENST00000429357.2,ENST00000316981.3	chr8	57078801:57080062:57080586:57080945:57083649:57083748,	57080587	57080945	57080731	57080731	Frame_Shift_Del	T	-	p.N33fs
HNSC	TCGA-DQ-5625-01	DDX11	ENST00000542661.1	chr12	31250818:31250931:31255176:31255245:31255360:31255461,	31255177	31255245	31255240	31255241	Frame_Shift_Ins	-	T	p.P756fs
HNSC	TCGA-CR-7389-01	TIGIT	ENST00000481065.1,ENST00000383671.3,ENST00000486257.1	chr3	114012874:114012969:114014391:114014721:114018443:114018550,	114014392	114014721	114014456	114014456	Frame_Shift_Del	C	-	p.I109fs
HNSC	TCGA-CR-7389-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579579	7579579	Frame_Shift_Del	C	-	p.P36fs
HNSC	TCGA-RS-A6TP-01	ETV7	ENST00000340181.4,ENST00000339796.5	chr6	36339106:36339337:36341229:36341355:36343647:36343812,	36341230	36341355	36341235	36341235	Frame_Shift_Del	G	-	p.P88fs
HNSC	TCGA-RS-A6TP-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54483261:54483375:54547174:54547396:54591152:54591339,	54547175	54547396	54547341	54547347	Frame_Shift_Del	TGAGGGA	-	p.PEG1157fs
HNSC	TCGA-CN-5373-01	RIMS2	ENST00000408894.2	chr8	105105698:105105871:105160834:105161076:105257143:105257285,	105160835	105161076	105160892	105160892	Frame_Shift_Del	A	-	p.T1068fs
HNSC	TCGA-CN-5373-01	ZC2HC1C	ENST00000238686.8	chr14	75536376:75536452:75537257:75538441:75544234:75544522,	75537258	75538441	75538105	75538105	Frame_Shift_Del	A	-	p.K277fs
HNSC	TCGA-CN-5373-01	ZC2HC1C	ENST00000524913.1	chr14	75536376:75536452:75537257:75538614:75544234:75544522,	75537258	75538614	75538105	75538105	Frame_Shift_Del	A	-	p.K277fs
HNSC	TCGA-CN-6992-01	COL4A3	ENST00000396578.3	chr2	228172487:228172635:228173614:228173792:228173919:228174034,	228173615	228173792	228173623	228173623	Frame_Shift_Del	G	-	p.G1491fs
HNSC	TCGA-CN-6992-01	GATA3	ENST00000379328.3	chr10	8097249:8097859:8100267:8100804:8105955:8106101,	8100268	8100804	8100668	8100668	Frame_Shift_Del	G	-	p.S214fs
HNSC	TCGA-CN-6992-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256552	19256556	Frame_Shift_Del	TATGT	-	p.LHM167fs
HNSC	TCGA-BA-A4IG-01	UBAP2	ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33941646:33941860:33943417:33943587:33944362:33944637,	33943418	33943587	33943557	33943560	Frame_Shift_Del	AACC	-	p.GS525fs
HNSC	TCGA-BA-A4IG-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560921	32560921	Frame_Shift_Del	T	-	p.L350fs
HNSC	TCGA-CN-5370-01	IVNS1ABP	ENST00000367498.3	chr1	185270565:185270695:185274667:185274775:185275616:185275757,185270565:185270695:185274667:185274775:185276145:185276271,	185274668	185274775	185274695	185274696	Frame_Shift_Ins	-	CT	p.R246fs
HNSC	TCGA-CN-5370-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20109115	20109115	Frame_Shift_Del	A	-	p.K504fs
HNSC	TCGA-CN-6018-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132173	51132173	Frame_Shift_Del	T	-	p.R88fs
HNSC	TCGA-D6-A4Z9-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735634	155735637	Frame_Shift_Del	GCCA	-	p.SG1209fs
HNSC	TCGA-D6-A4Z9-01	JPH3	ENST00000537256.1,ENST00000284262.2,ENST00000563609.1	chr16	87717747:87717872:87723251:87724132:87730185:87730408,	87723252	87724132	87723649	87723649	Frame_Shift_Del	G	-	p.S561fs
HNSC	TCGA-UF-A7JO-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131358	202131359	Frame_Shift_Del	AA	-	p.E109fs
HNSC	TCGA-UF-A7JO-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131358	202131359	Frame_Shift_Del	AA	-	p.E109fs
HNSC	TCGA-UF-A7JO-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539265	187539266	Frame_Shift_Ins	-	C	p.E2825fs
HNSC	TCGA-BB-8596-01	CNDP2	ENST00000579847.1,ENST00000581272.1,ENST00000581513.1,ENST00000584768.1,ENST00000582589.1,ENST00000324262.4,ENST00000582666.1,ENST00000582260.1,ENST00000583785.1,ENST00000577355.1,ENST00000583216.1	chr18	72168620:72168707:72173083:72173246:72179682:72179692,72168620:72168707:72173083:72173246:72176074:72176078,	72173084	72173246	72173115	72173119	Frame_Shift_Del	CTATT	-	p.PI79fs
HNSC	TCGA-CV-7099-01	DDX21	ENST00000354185.4	chr10	70734425:70734499:70737284:70737444:70738597:70738732,	70737285	70737444	70737400	70737400	Frame_Shift_Del	G	-	p.G620fs
HNSC	TCGA-CN-5360-01	CEP70	ENST00000464035.1,ENST00000481834.1,ENST00000470159.1,ENST00000264982.3,ENST00000468900.1,ENST00000462419.1,ENST00000542237.1,ENST00000478673.1,ENST00000474781.1,ENST00000484888.1	chr3	138289276:138289340:138289875:138289999:138290107:138290195,	138289876	138289999	138289944	138289944	Frame_Shift_Del	C	-	p.L73fs
HNSC	TCGA-CN-5360-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23346248	23346248	Frame_Shift_Del	G	-	p.G410fs
HNSC	TCGA-CN-5360-01	PLXNB3	ENST00000361971.5,ENST00000538776.1,ENST00000538966.1	chrX	153033703:153033883:153034402:153034531:153034616:153034717,	153034403	153034531	153034499	153034499	Frame_Shift_Del	G	-	p.G478fs
HNSC	TCGA-BB-4224-01	YTHDC1	ENST00000355665.3,ENST00000579690.1,ENST00000344157.4	chr4	69195719:69195837:69195919:69196028:69197820:69197915,	69195920	69196028	69195943	69195944	Frame_Shift_Del	AC	-	p.V403fs
HNSC	TCGA-BB-4224-01	COL1A2	ENST00000297268.6	chr7	94027059:94027070:94027693:94027708:94028360:94028396,	94027694	94027708	94027705	94027705	Frame_Shift_Del	A	-	p.R31fs
HNSC	TCGA-BB-4224-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578192	7578193	Frame_Shift_Del	GG	-	p.P219fs
HNSC	TCGA-CV-6441-01	LYAR	ENST00000343470.4,ENST00000452476.1	chr4	4269430:4269750:4270256:4270342:4275309:4275396,	4270257	4270342	4270287	4270287	Frame_Shift_Del	A	-	p.N325fs
HNSC	TCGA-CV-6441-01	RARG	ENST00000425354.2,ENST00000548317.1,ENST00000338561.5,ENST00000327550.3,ENST00000543726.1,ENST00000550265.1,ENST00000394426.1,ENST00000543762.1	chr12	53607877:53608019:53608229:53608390:53609076:53609136,	53608230	53608390	53608326	53608338	Frame_Shift_Del	ATAGCTGTCAGGT	-	p.SPDSY176fs
HNSC	TCGA-CV-6441-01	RAP1B	ENST00000450214.2	chr12	69018454:69018653:69042478:69042561:69044179:69044220,69004804:69004823:69042478:69042561:69044179:69044220,69004740:69004832:69042478:69042561:69044179:69044220,69004740:69004832:69042478:69042561:69047891:69047962,69004804:69004823:69042478:69042561:69047891:69047962,	69042479	69042561	69042549	69042549	Frame_Shift_Del	A	-	p.G15fs
HNSC	TCGA-CV-6441-01	RAP1B	ENST00000341355.5	chr12	69004740:69004832:69042485:69042561:69044179:69044220,69004804:69004823:69042485:69042561:69044179:69044220,	69042486	69042561	69042549	69042549	Frame_Shift_Del	A	-	p.G15fs
HNSC	TCGA-CV-6441-01	RAP1B	ENST00000485252.2	chr12	69004712:69004823:69042449:69042561:69044179:69044220,	69042450	69042561	69042549	69042549	Frame_Shift_Del	A	-	p.G15fs
HNSC	TCGA-CV-6441-01	TESC	ENST00000335209.7,ENST00000541210.1,ENST00000392545.4,ENST00000470612.1	chr12	117476761:117477015:117479751:117479799:117484363:117484471,	117479752	117479799	117479755	117479755	Frame_Shift_Del	C	-	p.L188fs
HNSC	TCGA-H7-A76A-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967357	Frame_Shift_Ins	-	A	p.*28fs
HNSC	TCGA-CQ-5327-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131502	202131505	Frame_Shift_Del	TTTC	-	p.IS157fs
HNSC	TCGA-CQ-5327-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131502	202131505	Frame_Shift_Del	TTTC	-	p.IS157fs
HNSC	TCGA-CQ-5327-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483703	56483704	Frame_Shift_Ins	-	G	p.R1710fs
HNSC	TCGA-CQ-5327-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881435	48881435	Frame_Shift_Del	G	-	p.E54fs
HNSC	TCGA-CV-7102-01	SYDE2	ENST00000234668.6	chr1	85647780:85648883:85655739:85656435:85665934:85666196,	85655740	85656435	85656306	85656307	Frame_Shift_Ins	-	A	p.S292fs
HNSC	TCGA-CN-A6V6-01	CEACAM1	ENST00000403444.3,ENST00000161559.6	chr19	43016501:43016631:43023099:43023387:43025418:43025673,	43023100	43023387	43023198	43023199	Frame_Shift_Ins	-	T	p.K383fs
HNSC	TCGA-HD-7229-01	MPP3	ENST00000398393.1,ENST00000589375.1,ENST00000496503.1,ENST00000398389.4	chr17	41895413:41895478:41898229:41898426:41901298:41901373,	41898230	41898426	41898342	41898343	Frame_Shift_Ins	-	GC	p.A282fs
HNSC	TCGA-CQ-6227-01	TEK	ENST00000406359.4,ENST00000519097.1,ENST00000380036.4	chr9	27218774:27218815:27220046:27220143:27228203:27228303,	27220047	27220143	27220064	27220064	Frame_Shift_Del	G	-	p.G1041fs
HNSC	TCGA-CN-A63W-01	AMPD2	ENST00000526301.1,ENST00000528667.1,ENST00000532851.1,ENST00000528454.1,ENST00000369840.2,ENST00000393688.3,ENST00000256578.3,ENST00000342115.4,ENST00000358729.4	chr1	110171000:110171117:110171264:110171428:110171730:110171857,	110171265	110171428	110171389	110171389	Frame_Shift_Del	C	-	p.S565fs
HNSC	TCGA-CN-A63W-01	PACRGL	ENST00000506951.1	chr4	20709425:20709493:20711305:20711396:20714410:20714454,20706282:20706437:20711305:20711396:20714410:20714454,	20711306	20711396	20711341	20711341	Frame_Shift_Del	G	-	p.W104fs
HNSC	TCGA-CN-A63W-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150925814	150925814	Frame_Shift_Del	G	-	p.P1625fs
HNSC	TCGA-CN-A63W-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96859602:96860861:96863847:96864033:96866556:96866667,	96863848	96864033	96863913	96863922	Frame_Shift_Del	ATGCAGCTTG	-	p.LCSL639fs
HNSC	TCGA-CN-A63W-01	PPFIA3	ENST00000602351.1,ENST00000334186.4	chr19	49639980:49640168:49641461:49641684:49642924:49643088,	49641462	49641684	49641518	49641518	Frame_Shift_Del	G	-	p.R637fs
HNSC	TCGA-CN-4726-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500152	10500153	Frame_Shift_Ins	-	C	p.S110fs
HNSC	TCGA-CV-7247-01	PTDSS1	ENST00000337004.4,ENST00000517309.1,ENST00000522072.1,ENST00000455950.2	chr8	97316267:97316409:97318671:97318784:97321784:97321850,	97318672	97318784	97318687	97318687	Frame_Shift_Del	A	-	p.T304fs
HNSC	TCGA-CV-7247-01	EIF4G2	ENST00000534272.1	chr11	10820759:10820971:10821098:10821303:10821636:10821895,10820759:10820971:10821098:10821303:10821790:10821842,	10821099	10821303	10821256	10821260	Frame_Shift_Del	CCTTT	-	p.GKG721fs
HNSC	TCGA-KU-A66S-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176700672:176700785:176707565:176707835:176709465:176709582,	176707566	176707835	176707798	176707798	Frame_Shift_Del	G	-	p.R1952fs
HNSC	TCGA-KU-A66S-01	MCM3	ENST00000596288.1,ENST00000476448.1,ENST00000419835.2,ENST00000229854.7	chr6	52141065:52141274:52141864:52141996:52142332:52142486,	52141865	52141996	52141929	52141929	Frame_Shift_Del	G	-	p.P412fs
HNSC	TCGA-KU-A66S-01	PRSS1	ENST00000463701.1,ENST00000486171.1,ENST00000311737.7	chr7	142459743:142459878:142460281:142460418:142460718:142460871,	142460282	142460418	142460328	142460328	Frame_Shift_Del	C	-	p.S181fs
HNSC	TCGA-KU-A66S-01	PRSS1	ENST00000492062.1	chr7	142459743:142459878:142460281:142460401:142460718:142460871,	142460282	142460401	142460328	142460328	Frame_Shift_Del	C	-	p.S181fs
HNSC	TCGA-KU-A66S-01	AKIP1	ENST00000534506.1	chr11	8932745:8932770:8932990:8933218:8933999:8934080,8932745:8932770:8932990:8933218:8936372:8936477,	8932991	8933218	8933164	8933165	Frame_Shift_Ins	-	C	p.AP56fs
HNSC	TCGA-KU-A66S-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060673	56060674	Frame_Shift_Ins	-	G	p.S30fs
HNSC	TCGA-KU-A66S-01	FAM19A5	ENST00000358295.5,ENST00000402357.1	chr22	49042408:49042558:49103528:49103656:49145650:49146220,	49103529	49103656	49103578	49103578	Frame_Shift_Del	G	-	p.E97fs
HNSC	TCGA-CR-6491-01	TFAP2A	ENST00000478375.1,ENST00000482890.1,ENST00000466073.1,ENST00000379604.2,ENST00000379613.3	chr6	10407025:10407077:10410133:10410568:10415173:10415233,	10410134	10410568	10410525	10410526	Frame_Shift_Ins	-	G	p.A32fs
HNSC	TCGA-CR-6491-01	TTI2	ENST00000360742.5,ENST00000431156.2	chr8	33361265:33361453:33364746:33364839:33367263:33367303,	33364747	33364839	33364791	33364792	Frame_Shift_Ins	-	A	p.H295fs
HNSC	TCGA-CN-A641-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176700672:176700785:176707565:176707835:176709465:176709582,	176707566	176707835	176707779	176707780	Frame_Shift_Ins	-	T	p.F1946fs
HNSC	TCGA-CN-A641-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210374	37210375	Frame_Shift_Ins	-	A	p.K219fs
HNSC	TCGA-CV-7411-01	PADI2	ENST00000375486.4,ENST00000375481.1	chr1	17411093:17411197:17413015:17413194:17418902:17419028,	17413016	17413194	17413121	17413121	Frame_Shift_Del	A	-	p.G244fs
HNSC	TCGA-CN-5367-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678468	73678468	Frame_Shift_Del	A	-	p.E1604fs
HNSC	TCGA-CN-5367-01	DCN	ENST00000549513.1,ENST00000052754.5,ENST00000393155.1,ENST00000550563.1,ENST00000552145.1,ENST00000552962.1,ENST00000547937.1	chr12	91540012:91540029:91558381:91558494:91572118:91572178,91552252:91552286:91558381:91558494:91572118:91572329,	91558382	91558494	91558464	91558464	Frame_Shift_Del	G	-	p.P81fs
HNSC	TCGA-CR-7364-01	PTPRU	ENST00000323874.8,ENST00000460170.2,ENST00000373779.3,ENST00000428026.2,ENST00000531385.1,ENST00000356870.3	chr1	29610451:29610488:29611242:29611381:29618380:29618538,	29611243	29611381	29611279	29611279	Frame_Shift_Del	C	-	p.S739fs
HNSC	TCGA-CR-7364-01	CREB1	ENST00000445803.1	chr2	208394827:208394858:208420351:208420473:208424949:208425072,208394646:208394742:208420351:208420473:208424949:208425072,	208420352	208420473	208420421	208420421	Frame_Shift_Del	A	-	p.E21fs
HNSC	TCGA-CR-7364-01	COL6A3	ENST00000347401.3	chr2	238296224:238296827:238303229:238303847:238305369:238305405,238289779:238290142:238303229:238303847:238305369:238305460,	238303230	238303847	238303598	238303598	Frame_Shift_Del	C	-	p.G114fs
HNSC	TCGA-CR-7364-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232114:26232197:26232870:26232993:26233194:26233314,	26232871	26232993	26232884	26232885	Frame_Shift_Ins	-	C	p.A329fs
HNSC	TCGA-CR-7364-01	MTA1	ENST00000331320.7,ENST00000438610.1,ENST00000406191.1,ENST00000481012.1,ENST00000405646.1,ENST00000498644.1,ENST00000424723.1	chr14	105916597:105916661:105920529:105920647:105924606:105924708,	105920530	105920647	105920619	105920619	Frame_Shift_Del	G	-	p.Q174fs
HNSC	TCGA-CR-7364-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579433	7579433	Frame_Shift_Del	G	-	p.P85fs
HNSC	TCGA-QK-A6VB-01	GRHL1	ENST00000494520.1,ENST00000324907.9,ENST00000497403.1,ENST00000405379.2,ENST00000472167.1	chr2	10101283:10101565:10102583:10102660:10104014:10104171,	10102584	10102660	10102641	10102642	Frame_Shift_Ins	-	T	p.F243fs
HNSC	TCGA-QK-A6VB-01	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000485398.1,ENST00000272427.6	chr2	72727056:72727101:72740260:72740381:72741762:72741809,	72740261	72740381	72740374	72740375	Frame_Shift_Ins	-	A	p.G352fs
HNSC	TCGA-QK-A6VB-01	TMEM131	ENST00000186436.5	chr2	98377255:98377377:98378497:98378663:98382576:98382726,	98378498	98378663	98378554	98378554	Frame_Shift_Del	G	-	p.P1611fs
HNSC	TCGA-QK-A6VB-01	SPEG	ENST00000396698.1,ENST00000312358.7,ENST00000464989.1,ENST00000498378.1	chr2	220309766:220309883:220312695:220313993:220315857:220316001,	220312696	220313993	220312872	220312872	Frame_Shift_Del	C	-	p.T331fs
HNSC	TCGA-QK-A6VB-01	NT5DC2	ENST00000307092.4,ENST00000307076.4,ENST00000422318.2,ENST00000492555.1,ENST00000478091.1,ENST00000466112.1,ENST00000459839.1,ENST00000463947.1	chr3	52559075:52559119:52559224:52559311:52561309:52561382,	52559225	52559311	52559266	52559266	Frame_Shift_Del	G	-	p.R352fs
HNSC	TCGA-QK-A6VB-01	SLC33A1	ENST00000359479.3	chr3	155551645:155551830:155560220:155560408:155571011:155571106,	155560221	155560408	155560343	155560344	Frame_Shift_Ins	-	T	p.KK280fs
HNSC	TCGA-QK-A6VB-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30652622	30652623	Frame_Shift_Del	CT	-	p.RA391fs
HNSC	TCGA-QK-A6VB-01	SLC44A4	ENST00000544672.1,ENST00000414427.1,ENST00000229729.6	chr6	31842236:31842297:31842497:31842623:31842705:31842805,	31842498	31842623	31842534	31842535	Frame_Shift_Ins	-	T	p.K68fs
HNSC	TCGA-QK-A6VB-01	SCML4	ENST00000459992.1,ENST00000440927.1	chr6	108070887:108071017:108076774:108076868:108145329:108145490,108070887:108071017:108076774:108076868:108093375:108093455,	108076775	108076868	108076790	108076791	Frame_Shift_Ins	-	G	p.L18fs
HNSC	TCGA-QK-A6VB-01	DMTN	ENST00000358242.3,ENST00000523300.1,ENST00000517305.1,ENST00000523623.1,ENST00000265800.5,ENST00000443491.2,ENST00000520174.1,ENST00000415253.1,ENST00000517804.1,ENST00000517418.1,ENST00000519850.1,ENST00000432128.1,ENST00000519907.1,ENST00000523782.2,ENST00000523266.1,ENST00000381470.3	chr8	21925037:21925193:21926526:21926571:21926929:21926967,	21926527	21926571	21926551	21926552	Frame_Shift_Ins	-	C	p.P92fs
HNSC	TCGA-QK-A6VB-01	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33200813:33201052:33208812:33209012:33209172:33209313,	33208813	33209012	33208969	33208969	Frame_Shift_Del	T	-	p.K438fs
HNSC	TCGA-QK-A6VB-01	USP54	ENST00000319786.7,ENST00000498143.1,ENST00000461520.1,ENST00000424265.1,ENST00000497106.1,ENST00000339859.4,ENST00000394811.2,ENST00000408019.1	chr10	75296026:75296195:75299201:75299351:75301132:75301279,	75299202	75299351	75299343	75299344	Frame_Shift_Ins	-	A	p.*278fs
HNSC	TCGA-QK-A6VB-01	TMEM41B	ENST00000299596.4	chr11	9302200:9302588:9304917:9305140:9308001:9308140,	9304918	9305140	9304991	9304992	Frame_Shift_Ins	-	T	p.NK285fs
HNSC	TCGA-QK-A6VB-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533350	94533351	Frame_Shift_Ins	-	T	p.F332fs
HNSC	TCGA-QK-A6VB-01	PIANP	ENST00000534837.1,ENST00000540656.1,ENST00000320591.5	chr12	6805608:6805690:6806452:6806958:6807210:6807270,	6806453	6806958	6806838	6806839	Frame_Shift_Ins	-	G	p.L46fs
HNSC	TCGA-QK-A6VB-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1,ENST00000382778.4	chr13	21199888:21199988:21205154:21205241:21212470:21212657,	21205155	21205241	21205180	21205180	Frame_Shift_Del	A	-	p.E451fs
HNSC	TCGA-QK-A6VB-01	STARD13	ENST00000255486.4,ENST00000336934.5,ENST00000399365.3	chr13	33680894:33681071:33684009:33684227:33684822:33685044,	33684010	33684227	33684168	33684168	Frame_Shift_Del	G	-	p.P963fs
HNSC	TCGA-QK-A6VB-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978038	15978038	Frame_Shift_Del	T	-	p.K18fs
HNSC	TCGA-QK-A6VB-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.G999fs
HNSC	TCGA-QK-A6VB-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.G999fs
HNSC	TCGA-QK-A6VB-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.G999fs
HNSC	TCGA-QK-A6VB-01	ATP1B2	ENST00000250111.4	chr17	7554429:7554948:7556691:7556820:7557158:7557263,	7556692	7556820	7556715	7556716	Frame_Shift_Ins	-	T	p.F46fs
HNSC	TCGA-QK-A6VB-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046886	17046886	Frame_Shift_Del	C	-	p.A351fs
HNSC	TCGA-QK-A6VB-01	SGCA	ENST00000344627.6,ENST00000543315.1,ENST00000262018.3,ENST00000513821.1	chr17	48244728:48244848:48244942:48245097:48245307:48245380,	48244943	48245097	48245065	48245066	Frame_Shift_Ins	-	C	p.P94fs
HNSC	TCGA-QK-A6VB-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465981	59465981	Frame_Shift_Del	A	-	p.K890fs
HNSC	TCGA-QK-A6VB-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706880	33706880	Frame_Shift_Del	G	-	p.Q31fs
HNSC	TCGA-QK-A6VB-01	KHSRP	ENST00000595223.1,ENST00000398148.3	chr19	6415619:6415745:6415818:6415907:6416308:6416418,	6415819	6415907	6415897	6415898	Frame_Shift_Ins	-	C	p.GP536fs
HNSC	TCGA-QK-A6VB-01	ECSIT	ENST00000417981.2,ENST00000585318.1,ENST00000270517.7,ENST00000592571.1	chr19	11618304:11618377:11618516:11618665:11618805:11618863,	11618517	11618665	11618561	11618562	Frame_Shift_Del	AC	-	p.VY300fs
HNSC	TCGA-QK-A6VB-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676874	36676874	Frame_Shift_Del	C	-	p.P137fs
HNSC	TCGA-QK-A6VB-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51159932	51159933	Frame_Shift_Ins	-	G	p.R1210fs
HNSC	TCGA-CQ-6218-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540720	187540742	Frame_Shift_Del	GCCAGTGCTGCTGTCTACATGAA	-	p.FHVDSSTG2333fs
HNSC	TCGA-CQ-6218-01	AKAP7	ENST00000368123.4,ENST00000431975.2	chr6	131520600:131520713:131540800:131540948:131602669:131603083,	131540801	131540948	131540807	131540807	Frame_Shift_Del	A	-	p.K238fs
HNSC	TCGA-CQ-6218-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578267	7578267	Frame_Shift_Del	A	-	p.L194fs
HNSC	TCGA-C9-A47Z-01	SCNN1D	ENST00000400928.3,ENST00000379101.4,ENST00000338555.2	chr1	1217655:1217695:1219357:1219470:1221305:1221548,	1219358	1219470	1219451	1219451	Frame_Shift_Del	G	-	p.R16fs
HNSC	TCGA-C9-A47Z-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579379	7579380	Frame_Shift_Ins	-	A	p.P103fs
HNSC	TCGA-CV-A45Q-01	WRN	ENST00000298139.5	chr8	30922430:30922579:30924548:30924698:30925773:30925843,	30924549	30924698	30924631	30924631	Frame_Shift_Del	G	-	p.R196fs
HNSC	TCGA-CV-A45Q-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248524	44248525	Frame_Shift_Del	AA	-	p.L329fs
HNSC	TCGA-CV-7435-01	PIGK	ENST00000370812.3,ENST00000359130.1	chr1	77629530:77629627:77632403:77632515:77634944:77635004,	77632404	77632515	77632420	77632420	Frame_Shift_Del	A	-	p.I157fs
HNSC	TCGA-CV-7435-01	IAH1	ENST00000545602.1,ENST00000481367.1	chr2	9624560:9624679:9628275:9628521:9634830:9634989,	9628276	9628521	9628388	9628388	Frame_Shift_Del	T	-	p.L114fs
HNSC	TCGA-CV-7435-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968043	5968044	Frame_Shift_Ins	-	T	p.NK729fs
HNSC	TCGA-CV-7440-01	RNF181	ENST00000441634.1,ENST00000306368.4	chr2	85823656:85823772:85823944:85824054:85824226:85824301,	85823945	85824054	85824002	85824006	Frame_Shift_Del	TGCCT	-	p.MP92fs
HNSC	TCGA-CV-7440-01	RNF181	ENST00000443647.1	chr2	85823656:85823772:85823979:85824054:85824226:85824301,	85823980	85824054	85824002	85824006	Frame_Shift_Del	TGCCT	-	p.MP92fs
HNSC	TCGA-CV-7440-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143095840	143095841	Frame_Shift_Ins	-	G	p.G397fs
HNSC	TCGA-CV-7440-01	ITGA8	ENST00000378076.3	chr10	15639205:15639298:15646206:15646354:15647722:15647790,	15646207	15646354	15646284	15646284	Frame_Shift_Del	C	-	p.E681fs
HNSC	TCGA-CV-7440-01	ADCY4	ENST00000310677.4,ENST00000554781.1,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24788534:24788642:24788947:24789094:24790921:24791182,24788534:24788642:24788947:24789094:24791271:24791430,	24788948	24789094	24788954	24788954	Frame_Shift_Del	A	-	p.F909fs
HNSC	TCGA-CR-7390-01	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3,ENST00000368428.1	chr1	154961252:154961325:154962035:154962183:154962634:154962733,	154962036	154962183	154962050	154962050	Frame_Shift_Del	A	-	p.K379fs
HNSC	TCGA-CR-7390-01	MR1	ENST00000367579.3,ENST00000367580.5	chr1	181019281:181019422:181021370:181021646:181022708:181022813,	181021371	181021646	181021478	181021478	Frame_Shift_Del	A	-	p.K238fs
HNSC	TCGA-UF-A7JJ-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542175	187542196	Frame_Shift_Del	TGGGGTTCCCATGTCATGCACT	-	p.QVHDMGTP1848fs
HNSC	TCGA-UF-A7JJ-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.G73fs
HNSC	TCGA-CN-6994-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
HNSC	TCGA-CR-5247-01	FIBCD1	ENST00000451466.1,ENST00000448616.1,ENST00000253018.4,ENST00000372338.4	chr9	133799623:133799783:133804953:133805433:133813922:133814035,	133804954	133805433	133805423	133805423	Frame_Shift_Del	C	-	p.C28fs
HNSC	TCGA-CN-6023-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275546	114275547	Frame_Shift_Ins	-	C	p.KP1924fs
HNSC	TCGA-CN-6023-01	TMEM134	ENST00000545682.1	chr11	67232273:67232327:67232526:67232738:67234782:67234859,	67232527	67232738	67232544	67232544	Frame_Shift_Del	T	-	p.E145fs
HNSC	TCGA-CN-6023-01	TMEM134	ENST00000537601.1,ENST00000308022.2	chr11	67232273:67232327:67232526:67232571:67234782:67234859,	67232527	67232571	67232544	67232544	Frame_Shift_Del	T	-	p.E145fs
HNSC	TCGA-MT-A51W-01	YME1L1	ENST00000376016.3,ENST00000375972.3,ENST00000326799.3	chr10	27406504:27406656:27408222:27408378:27409363:27409476,	27408223	27408378	27408260	27408261	Frame_Shift_Ins	-	A	p.K567fs
HNSC	TCGA-CQ-7071-01	DOCK10	ENST00000422684.1,ENST00000409592.3,ENST00000258390.7	chr2	225664878:225664980:225666632:225666757:225668828:225668930,	225666633	225666757	225666675	225666675	Frame_Shift_Del	A	-	p.S1445fs
HNSC	TCGA-CQ-7071-01	ETS2	ENST00000360214.3,ENST00000360938.3	chr21	40188931:40189015:40190348:40190570:40191426:40191690,	40190349	40190570	40190567	40190568	Frame_Shift_Del	TC	-	p.S270fs
HNSC	TCGA-CN-A49B-01	IL20RB	ENST00000469964.1,ENST00000309741.5	chr3	136701001:136701192:136708282:136708407:136714255:136714348,	136708283	136708407	136708300	136708300	Frame_Shift_Del	G	-	p.G142fs
HNSC	TCGA-CV-A465-01	MBTPS1	ENST00000343411.3	chr16	84129206:84129410:84132657:84132915:84135225:84135712,	84132658	84132915	84132827	84132828	Frame_Shift_Ins	-	T	p.M84fs
HNSC	TCGA-CV-A465-01	SIGLEC15	ENST00000389474.3	chr18	43416993:43417053:43417477:43417861:43418682:43419060,	43417478	43417861	43417720	43417720	Frame_Shift_Del	A	-	p.N119fs
HNSC	TCGA-BA-4075-01	ZMYND10	ENST00000442887.1,ENST00000360165.3,ENST00000231749.3	chr3	50380548:50380637:50380737:50380875:50380993:50381047,	50380738	50380875	50380780	50380781	Frame_Shift_Ins	-	C	p.A156fs
HNSC	TCGA-BA-4075-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542087	187542088	Frame_Shift_Ins	-	A	p.*S1884fs
HNSC	TCGA-BA-4075-01	ERCC6L2	ENST00000470362.1,ENST00000466840.1,ENST00000437817.1,ENST00000288985.7	chr9	98703785:98703831:98718195:98718295:98728843:98728996,	98718196	98718295	98718215	98718215	Frame_Shift_Del	T	-	p.C634fs
HNSC	TCGA-BA-4075-01	MAPK6	ENST00000261845.5	chr15	52311434:52311573:52338026:52339212:52342189:52342334,	52338027	52339212	52338753	52338754	Frame_Shift_Ins	-	T	p.G33fs
HNSC	TCGA-BA-4075-01	NUP50	ENST00000425733.2,ENST00000396096.2,ENST00000347635.4,ENST00000493456.1,ENST00000407019.2	chr22	45577166:45577248:45579282:45579401:45580333:45580385,	45579283	45579401	45579372	45579372	Frame_Shift_Del	A	-	p.Q392fs
HNSC	TCGA-BA-5556-01	JAK3	ENST00000527031.1,ENST00000534444.1,ENST00000458235.1,ENST00000526008.1,ENST00000527670.1	chr19	17954188:17954300:17954585:17954709:17955042:17955187,	17954586	17954709	17954641	17954642	Frame_Shift_Ins	-	C	p.P85fs
HNSC	TCGA-CN-4728-01	SLC2A5	ENST00000486632.1,ENST00000487835.1,ENST00000464985.1	chr1	9118210:9118309:9129562:9129653:9145072:9145185,	9129563	9129653	9129568	9129568	Frame_Shift_Del	C	-	p.E10fs
HNSC	TCGA-CN-4728-01	TOX4	ENST00000448790.2,ENST00000262709.3,ENST00000405508.1,ENST00000455393.1	chr14	21960666:21961416:21963387:21963551:21964703:21964913,	21963388	21963551	21963465	21963466	Frame_Shift_Ins	-	A	p.V574fs
HNSC	TCGA-CN-4728-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579514	7579514	Frame_Shift_Del	G	-	p.P58fs
HNSC	TCGA-CN-4728-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208539	55208540	Frame_Shift_Ins	-	T	p.KQ239fs
HNSC	TCGA-BA-6870-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120497662:120497855:120502014:120502125:120506196:120506430,	120502015	120502125	120502074	120502074	Frame_Shift_Del	T	-	p.H656fs
HNSC	TCGA-BA-6870-01	BAG6	ENST00000375976.4,ENST00000470875.1,ENST00000404765.2,ENST00000437771.1,ENST00000375964.6,ENST00000211379.5,ENST00000362049.6	chr6	31609995:31610180:31610605:31610892:31611666:31611751,	31610606	31610892	31610753	31610754	Frame_Shift_Ins	-	A	p.S632fs
HNSC	TCGA-BA-6870-01	PAXIP1	ENST00000473219.1,ENST00000464717.1,ENST00000404141.1,ENST00000397192.1,ENST00000457196.1	chr7	154738074:154738135:154738221:154738297:154738388:154738523,	154738222	154738297	154738224	154738225	Frame_Shift_Ins	-	T	p.R1044fs
HNSC	TCGA-4P-AA8J-01	ABHD17B	ENST00000333421.6	chr9	74484998:74485178:74489529:74489999:74525549:74525658,	74489530	74489999	74489702	74489703	Frame_Shift_Ins	-	A	p.QK98fs
HNSC	TCGA-4P-AA8J-01	STK4	ENST00000396731.4,ENST00000372801.1,ENST00000474717.1,ENST00000372806.3	chr20	43610469:43610584:43615772:43615937:43623730:43623898,	43615773	43615937	43615932	43615933	Frame_Shift_Ins	-	T	p.Y174fs
HNSC	TCGA-CN-A497-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646211	215646211	Frame_Shift_Del	C	-	p.R129fs
HNSC	TCGA-CN-A497-01	SLC2A2	ENST00000314251.3	chr3	170724936:170725052:170727746:170727871:170736319:170736412,170724936:170725052:170727746:170727871:170732257:170732320,	170727747	170727871	170727800	170727800	Frame_Shift_Del	C	-	p.G148fs
HNSC	TCGA-CN-A497-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099177	56099177	Frame_Shift_Del	C	-	p.E31fs
HNSC	TCGA-HD-A4C1-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910589	29910590	Frame_Shift_Ins	-	C	p.DP43fs
HNSC	TCGA-HD-A4C1-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3	chr19	1109133:1109210:1109290:1109422:1109504:1109597,	1109291	1109422	1109414	1109420	Frame_Shift_Del	ACCGCGG	-	p.VRG1073fs
HNSC	TCGA-CQ-5324-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10425157:10425303:10425466:10425706:10428524:10428560,	10425467	10425706	10425476	10425477	Frame_Shift_Ins	-	C	p.P1508fs
HNSC	TCGA-CQ-5324-01	SPTBN4	ENST00000352632.3,ENST00000392025.1,ENST00000598249.1,ENST00000597389.1	chr19	41075562:41075632:41076341:41076634:41077924:41078098,	41076342	41076634	41076449	41076450	Frame_Shift_Ins	-	A	p.A2379fs
HNSC	TCGA-CV-7238-01	ATP2C2	ENST00000567892.1	chr16	84488423:84488590:84492725:84492794:84494259:84494407,	84492726	84492794	84492766	84492766	Frame_Shift_Del	A	-	p.K730fs
HNSC	TCGA-F7-A50I-01	PICALM	ENST00000529016.1	chr11	85685824:85685855:85692171:85692271:85692787:85692818,85670079:85670103:85692171:85692271:85692787:85692818,	85692172	85692271	85692227	85692227	Frame_Shift_Del	C	-	p.G568fs
HNSC	TCGA-F7-A61S-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545000	196545001	Frame_Shift_Ins	-	T	p.SF78fs
HNSC	TCGA-F7-A61S-01	C6orf89	ENST00000510325.2,ENST00000480824.2,ENST00000355190.3,ENST00000373685.1,ENST00000359359.2	chr6	36884220:36884350:36887353:36887477:36891122:36891298,	36887354	36887477	36887446	36887447	Frame_Shift_Del	TG	-	p.SV306fs
HNSC	TCGA-F7-A61S-01	IPO8	ENST00000544829.1,ENST00000256079.4	chr12	30814074:30814200:30815260:30815421:30816422:30816588,	30815261	30815421	30815384	30815385	Frame_Shift_Ins	-	A	p.T544fs
HNSC	TCGA-MT-A67G-01	FBXL19	ENST00000471231.2,ENST00000562319.1,ENST00000427128.1,ENST00000380310.2,ENST00000338343.4	chr16	30938893:30938980:30939065:30939284:30939787:30939820,	30939066	30939284	30939203	30939204	Frame_Shift_Ins	-	C	p.GP182fs
HNSC	TCGA-CV-A45U-01	ZNF563	ENST00000595977.1	chr19	12430000:12430125:12430243:12430647:12432085:12432146,	12430244	12430647	12430288	12430298	Frame_Shift_Del	AGGTTTCTACG	-	p.RRNL181fs
HNSC	TCGA-P3-A6T7-01	GFM2	ENST00000296805.3,ENST00000509430.1,ENST00000345239.2	chr5	74021765:74021951:74026084:74026223:74026426:74026600,74021765:74021951:74026084:74026223:74028846:74028923,	74026085	74026223	74026194	74026195	Frame_Shift_Ins	-	T	p.H539fs
HNSC	TCGA-BA-4076-01	ULK4	ENST00000301831.4,ENST00000460406.1	chr3	41841624:41841785:41860914:41860998:41877355:41877463,	41860915	41860998	41860985	41860985	Frame_Shift_Del	T	-	p.K593fs
HNSC	TCGA-BA-4076-01	PLXND1	ENST00000324093.4,ENST00000393239.1	chr3	129292436:129292588:129293178:129293333:129294311:129294405,	129293179	129293333	129293227	129293227	Frame_Shift_Del	C	-	p.G879fs
HNSC	TCGA-BA-4076-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.G73fs
HNSC	TCGA-BA-5557-01	JAK3	ENST00000527031.1,ENST00000534444.1,ENST00000458235.1,ENST00000526008.1,ENST00000527670.1	chr19	17954188:17954300:17954585:17954709:17955042:17955187,	17954586	17954709	17954641	17954642	Frame_Shift_Ins	-	C	p.P85fs
HNSC	TCGA-CN-4739-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437687	122437688	Frame_Shift_Ins	-	A	p.KK1563fs
HNSC	TCGA-CN-4739-01	DAZAP2	ENST00000549555.1	chr12	51634126:51634245:51634654:51634823:51636113:51636600,	51634655	51634823	51634685	51634686	Frame_Shift_Ins	-	C	p.C55fs
HNSC	TCGA-CN-4739-01	DAZAP2	ENST00000436900.2	chr12	51634126:51634245:51634682:51634900:51636113:51636215,	51634683	51634900	51634685	51634686	Frame_Shift_Ins	-	C	p.C55fs
HNSC	TCGA-CN-4739-01	DAZAP2	ENST00000551534.1,ENST00000549497.1,ENST00000412716.3,ENST00000551313.1	chr12	51634126:51634245:51634654:51634900:51636113:51636215,	51634655	51634900	51634685	51634686	Frame_Shift_Ins	-	C	p.C55fs
HNSC	TCGA-CV-6952-01	SLC9A6	ENST00000370698.3,ENST00000370695.4,ENST00000370701.1	chrX	135095507:135095596:135098803:135098917:135104744:135104856,	135098804	135098917	135098865	135098865	Frame_Shift_Del	T	-	p.L433fs
HNSC	TCGA-CV-7424-01	LRP8	ENST00000465675.1,ENST00000354412.3	chr1	53736898:53737018:53746258:53746387:53755238:53755361,53741302:53741425:53746258:53746387:53755238:53755361,	53746259	53746387	53746315	53746316	Frame_Shift_Ins	-	A	p.L147fs
HNSC	TCGA-CV-7424-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
HNSC	TCGA-F7-7848-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559334	210559334	Frame_Shift_Del	G	-	p.G814fs
HNSC	TCGA-F7-7848-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559334	210559334	Frame_Shift_Del	G	-	p.G814fs
HNSC	TCGA-F7-7848-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730308	1730308	Frame_Shift_Del	C	-	p.D393fs
HNSC	TCGA-F7-7848-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638682	176638682	Frame_Shift_Del	G	-	p.M1094fs
HNSC	TCGA-F7-7848-01	ZNF292	ENST00000369577.3	chr6	87926016:87926095:87928313:87928449:87943042:87943245,	87928314	87928449	87928336	87928336	Frame_Shift_Del	A	-	p.E142fs
HNSC	TCGA-F7-7848-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579514	7579514	Frame_Shift_Del	G	-	p.P58fs
HNSC	TCGA-UF-A7J9-01	MARCH3	ENST00000308660.5	chr5	126213876:126214086:126250621:126250826:126253675:126253919,	126250622	126250826	126250792	126250792	Frame_Shift_Del	G	-	p.H75fs
HNSC	TCGA-UF-A7J9-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971008	21971008	Frame_Shift_Del	A	-	p.P131fs
HNSC	TCGA-UF-A7J9-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971008	21971008	Frame_Shift_Del	A	-	p.P131fs
HNSC	TCGA-UF-A7J9-01	CUBN	ENST00000377833.4	chr10	16882883:16883046:16893233:16893442:16911634:16911852,	16893234	16893442	16893336	16893336	Frame_Shift_Del	C	-	p.W3187fs
HNSC	TCGA-CR-7369-01	CASZ1	ENST00000377022.3,ENST00000496432.2,ENST00000344008.5	chr1	10714475:10714648:10715705:10715870:10716702:10716793,	10715706	10715870	10715709	10715710	Frame_Shift_Ins	-	A	p.T554fs
HNSC	TCGA-F7-A50G-01	ARSK	ENST00000504873.1,ENST00000513814.1,ENST00000380009.4	chr5	94918619:94918902:94922265:94922437:94927104:94927329,	94922266	94922437	94922369	94922370	Frame_Shift_Ins	-	A	p.K268fs
HNSC	TCGA-QK-A8ZA-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225367708:225367789:225368368:225368539:225370672:225370849,	225368369	225368539	225368438	225368439	Frame_Shift_Ins	-	A	p.C436fs
HNSC	TCGA-QK-A8ZA-01	PYGB	ENST00000216962.4,ENST00000471359.1,ENST00000428458.1	chr20	25274793:25274928:25276239:25276306:25277005:25277104,	25276240	25276306	25276271	25276272	Frame_Shift_Ins	-	T	p.A782fs
HNSC	TCGA-CR-7370-01	CNST	ENST00000366512.3,ENST00000483271.1,ENST00000366513.4	chr1	246754904:246755243:246784730:246784936:246795195:246795226,	246784731	246784936	246784843	246784844	Frame_Shift_Ins	-	GC	p.DA164fs
HNSC	TCGA-CR-7370-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000397991.4,ENST00000317104.7,ENST00000489671.1,ENST00000467072.1,ENST00000479040.1,ENST00000486111.1,ENST00000495310.1,ENST00000310282.6,ENST00000467667.1,ENST00000477292.1	chr3	141678641:141678682:141682653:141682805:141688914:141688983,	141682654	141682805	141682777	141682777	Frame_Shift_Del	C	-	p.R194fs
HNSC	TCGA-CR-7370-01	GPRC6A	ENST00000530250.1,ENST00000368549.3	chr6	117128057:117128369:117130476:117130780:117149982:117150198,	117130477	117130780	117130668	117130668	Frame_Shift_Del	A	-	p.C103fs
HNSC	TCGA-CR-7370-01	RAB22A	ENST00000244040.3	chr20	56928487:56928594:56929211:56929321:56934661:56942563,	56929212	56929321	56929251	56929254	Frame_Shift_Del	TATT	-	p.SI139fs
HNSC	TCGA-CR-7370-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300912	18300912	Frame_Shift_Del	G	-	p.P1505fs
HNSC	TCGA-CN-A6V3-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192448	211192448	Frame_Shift_Del	A	-	p.Y237fs
HNSC	TCGA-CN-A6V3-01	KCNH1	ENST00000367007.4	chr1	211092981:211093411:211192205:211192598:211256121:211256240,	211192206	211192598	211192448	211192448	Frame_Shift_Del	A	-	p.Y237fs
HNSC	TCGA-CN-A6V3-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581415	17581434	Frame_Shift_Del	TCGCATTTTTTATGACATGA	-	p.CRIFYDMK12fs
HNSC	TCGA-BA-5555-01	CAPZB	ENST00000433834.1,ENST00000401084.2,ENST00000375144.1	chr1	19666045:19666111:19670851:19670928:19671680:19671746,	19670852	19670928	19670883	19670884	Frame_Shift_Ins	-	A	p.LK233fs
HNSC	TCGA-BA-5555-01	UHRF1BP1L	ENST00000279907.7,ENST00000356828.3	chr12	100497712:100497729:100502163:100502326:100536369:100536602,	100502164	100502326	100502306	100502319	Frame_Shift_Del	GGAGATAAATTTTT	-	p.KNLSP18fs
HNSC	TCGA-CR-6467-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911160	29911179	Frame_Shift_Del	CCTGCGCTCTTGGACCGCGG	-	p.DLRSWTAA153fs
HNSC	TCGA-CR-6467-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232949	19232950	Frame_Shift_Ins	-	A	p.*467fs
HNSC	TCGA-DQ-7588-01	IPO8	ENST00000544829.1,ENST00000535598.1,ENST00000256079.4	chr12	30784828:30784945:30787016:30787220:30789915:30790083,	30787017	30787220	30787082	30787082	Frame_Shift_Del	A	-	p.F945fs
HNSC	TCGA-CV-7407-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71653593	71653596	Frame_Shift_Del	CCAT	-	p.PL1532fs
HNSC	TCGA-T2-A6WX-01	KDM1B	ENST00000388870.2,ENST00000297792.5,ENST00000397244.1	chr6	18161557:18161685:18163065:18163155:18166497:18166609,	18163066	18163155	18163094	18163094	Frame_Shift_Del	T	-	p.W82fs
HNSC	TCGA-T2-A6WX-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-CV-6956-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579356	7579359	Frame_Shift_Del	GACG	-	p.RL110fs
HNSC	TCGA-CV-6956-01	MFGE8	ENST00000558029.1,ENST00000566497.1,ENST00000268151.7,ENST00000268150.8	chr15	89450425:89450607:89453022:89453154:89456477:89456490,	89453023	89453154	89453067	89453074	Frame_Shift_Del	GTGTACGA	-	p.SYT44fs
HNSC	TCGA-CQ-7068-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
HNSC	TCGA-CQ-7068-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000309536.2,ENST00000520818.1	chr8	92346522:92346675:92350377:92350460:92352631:92352704,	92350378	92350460	92350418	92350418	Frame_Shift_Del	A	-	p.E279fs
HNSC	TCGA-CV-7178-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971132	21971133	Frame_Shift_Ins	-	G	p.P90fs
HNSC	TCGA-CV-7178-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971132	21971133	Frame_Shift_Ins	-	G	p.P90fs
HNSC	TCGA-P3-A6T8-01	PLEKHA8	ENST00000396259.1,ENST00000396257.2,ENST00000449726.1,ENST00000258679.7,ENST00000440706.2	chr7	30088839:30088998:30090049:30090090:30092324:30092482,	30090050	30090090	30090065	30090066	Frame_Shift_Ins	-	T	p.T205fs
HNSC	TCGA-P3-A6T8-01	NRDE2	ENST00000553409.1,ENST00000357904.3,ENST00000354366.3	chr14	90767582:90767716:90769063:90769469:90770278:90770726,	90769064	90769469	90769458	90769459	Frame_Shift_Ins	-	A	p.K339fs
HNSC	TCGA-F7-A61W-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
HNSC	TCGA-F7-A61W-01	KMT2D	ENST00000301067.7	chr12	49446989:49447104:49447258:49447424:49447760:49447923,	49447259	49447424	49447385	49447385	Frame_Shift_Del	A	-	p.L238fs
HNSC	TCGA-F7-A61W-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576862	7576863	Frame_Shift_Ins	-	A	p.Y328fs
HNSC	TCGA-CV-5973-01	HLA-B	ENST00000412585.2	chr6	31322409:31322442:31322883:31323000:31323093:31323104,	31322884	31323000	31322969	31322970	Frame_Shift_Del	CA	-	p.V309fs
HNSC	TCGA-CV-5973-01	ARAP1	ENST00000452383.2,ENST00000359373.5,ENST00000455638.2,ENST00000393605.3,ENST00000334211.8,ENST00000427971.2,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72410461:72410597:72412693:72412828:72413949:72414124,	72412694	72412828	72412741	72412741	Frame_Shift_Del	T	-	p.K752fs
HNSC	TCGA-CV-5973-01	NFIC	ENST00000589123.1,ENST00000589164.1,ENST00000443272.2	chr19	3452638:3452664:3453760:3453914:3456547:3456598,	3453761	3453914	3453868	3453869	Frame_Shift_Ins	-	C	p.R451fs
HNSC	TCGA-CN-6012-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741775	37741775	Frame_Shift_Del	A	-	p.L705fs
HNSC	TCGA-CV-7100-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46099160:46099319:46099767:46099908:46105881:46106075,	46099768	46099908	46099783	46099784	Frame_Shift_Ins	-	A	p.Q290fs
HNSC	TCGA-CV-7100-01	TIMMDC1	ENST00000463927.2	chr3	119217427:119217774:119219541:119219707:119222378:119222467,119217429:119217789:119219541:119219707:119236051:119236162,	119219542	119219707	119219666	119219667	Frame_Shift_Ins	-	AG	p.E107fs
HNSC	TCGA-CQ-6225-01	ATP6V1C2	ENST00000272238.4,ENST00000381661.3	chr2	10904456:10904551:10908844:10908936:10911964:10912063,	10908845	10908936	10908907	10908908	Frame_Shift_Del	AA	-	p.TN147fs
HNSC	TCGA-CQ-6225-01	DEDD2	ENST00000593561.1	chr19	42713851:42713992:42719284:42719404:42721783:42721821,42713851:42713992:42719284:42719404:42724225:42724275,	42719285	42719404	42719365	42719374	Frame_Shift_Del	GAAGAGCTGG	-	p.SSSS120fs
HNSC	TCGA-CQ-6225-01	DEDD2	ENST00000600559.1	chr19	42713851:42713992:42719299:42719404:42721783:42721821,	42719300	42719404	42719365	42719374	Frame_Shift_Del	GAAGAGCTGG	-	p.SSSS120fs
HNSC	TCGA-CV-6951-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970919	21970919	Frame_Shift_Del	C	-	p.A148fs
HNSC	TCGA-CV-A45R-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971124	21971125	Frame_Shift_Del	GA	-	p.SH92fs
HNSC	TCGA-CV-A45R-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971124	21971125	Frame_Shift_Del	GA	-	p.SH92fs
HNSC	TCGA-DQ-5630-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576868	7576886	Frame_Shift_Del	TTCTCCATCCAGTGGTTTC	-	p.KKPLDGE320fs
HNSC	TCGA-P3-A6T6-01	CLCNKA	ENST00000464764.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4,ENST00000495784.1	chr1	16348546:16348558:16349107:16349214:16350294:16350409,	16349108	16349214	16349201	16349201	Frame_Shift_Del	C	-	p.R30fs
HNSC	TCGA-CR-7402-01	ANXA4	ENST00000394295.4,ENST00000477632.1,ENST00000460439.1,ENST00000484219.1,ENST00000487351.2,ENST00000409920.1	chr2	70008693:70008706:70015185:70015273:70031664:70031721,	70015186	70015273	70015233	70015233	Frame_Shift_Del	G	-	p.M19fs
HNSC	TCGA-CR-7402-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123983092	123983092	Frame_Shift_Del	G	-	p.P995fs
HNSC	TCGA-CR-7402-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675254	176675254	Frame_Shift_Del	G	-	p.G1524fs
HNSC	TCGA-CR-7402-01	ESCO2	ENST00000518262.1,ENST00000305188.8	chr8	27637715:27637784:27641516:27641574:27645401:27645519,	27641517	27641574	27641568	27641569	Frame_Shift_Ins	-	A	p.*336fs
HNSC	TCGA-CR-7402-01	STRA6	ENST00000574278.1,ENST00000395105.4,ENST00000423167.2,ENST00000574570.1,ENST00000569936.1,ENST00000432245.2,ENST00000323940.5,ENST00000535552.1,ENST00000563965.1,ENST00000573214.1,ENST00000449139.2,ENST00000571341.1,ENST00000416286.3	chr15	74489679:74489764:74490092:74490159:74494495:74494623,	74490093	74490159	74490147	74490147	Frame_Shift_Del	G	-	p.S42fs
HNSC	TCGA-CR-7402-01	STRA6	ENST00000574439.1,ENST00000573456.1	chr15	74489679:74489764:74490092:74490203:74494495:74494623,	74490093	74490203	74490147	74490147	Frame_Shift_Del	G	-	p.S42fs
HNSC	TCGA-CR-7402-01	CYP4F22	ENST00000601005.2,ENST00000269703.3	chr19	15648682:15648804:15651260:15651528:15654781:15654848,	15651261	15651528	15651434	15651434	Frame_Shift_Del	G	-	p.R284fs
HNSC	TCGA-CN-6020-01	SUN1	ENST00000471349.1,ENST00000456758.2,ENST00000493681.1,ENST00000413171.2,ENST00000340926.3	chr7	882842:882869:882977:883157:888054:888058,	882978	883157	883110	883110	Frame_Shift_Del	C	-	p.A262fs
HNSC	TCGA-CV-6936-01	NSUN4	ENST00000471871.1,ENST00000474844.1,ENST00000537428.1,ENST00000536062.1,ENST00000495427.1,ENST00000498008.1,ENST00000307089.3	chr1	46818539:46818700:46826375:46826500:46827241:46827666,	46826376	46826500	46826430	46826430	Frame_Shift_Del	A	-	p.N271fs
HNSC	TCGA-CV-6936-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	21581734:21581928:21592309:21592486:21594730:21594955,	21592310	21592486	21592401	21592402	Frame_Shift_Ins	-	A	p.K719fs
HNSC	TCGA-CV-7263-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439912	52439913	Frame_Shift_Del	TG	-	p.Q267fs
HNSC	TCGA-T2-A6WZ-01	DDX1	ENST00000381341.2,ENST00000233084.3,ENST00000459706.1	chr2	15758304:15758394:15760331:15760520:15761188:15761240,	15760332	15760520	15760415	15760416	Frame_Shift_Ins	-	T	p.K431fs
HNSC	TCGA-CV-A45V-01	FGFR4	ENST00000514472.1	chr5	176513914:176514078:176516558:176516694:176517390:176517561,	176516559	176516694	176516626	176516627	Frame_Shift_Ins	-	G	p.W8fs
HNSC	TCGA-CV-A45V-01	FGFR4	ENST00000292410.3,ENST00000393648.2,ENST00000502906.1	chr5	176513916:176514034:176516550:176516694:176517390:176517561,	176516551	176516694	176516626	176516627	Frame_Shift_Ins	-	G	p.W8fs
HNSC	TCGA-CV-A45V-01	KMT2C	ENST00000558084.1,ENST00000360104.3,ENST00000262189.6,ENST00000355193.2,ENST00000424877.1,ENST00000473186.1	chr7	151847984:151848092:151848526:151848666:151849789:151850039,	151848527	151848666	151848643	151848644	Frame_Shift_Ins	-	A	p.S4241fs
HNSC	TCGA-CV-A45V-01	DHRS1	ENST00000288111.7,ENST00000396813.1	chr14	24761417:24761536:24761857:24761990:24765714:24765794,	24761858	24761990	24761870	24761871	Frame_Shift_Del	CA	-	p.V165fs
HNSC	TCGA-CV-5436-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27874007	27874008	Frame_Shift_Ins	-	C	p.S1540fs
HNSC	TCGA-CV-5436-01	AGFG2	ENST00000474713.1,ENST00000300176.4,ENST00000430857.1,ENST00000262935.4	chr7	100154216:100154249:100159881:100160002:100160216:100160305,100153289:100153358:100159881:100160002:100160216:100160305,	100159882	100160002	100159920	100159921	Frame_Shift_Ins	-	C	p.T306fs
HNSC	TCGA-CV-5436-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500152	10500153	Frame_Shift_Ins	-	C	p.S110fs
HNSC	TCGA-CV-5436-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41813935:41814078:41814295:41814448:41814962:41815158,	41814296	41814448	41814429	41814430	Frame_Shift_Ins	-	C	p.P921fs
HNSC	TCGA-CV-5436-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-CV-7416-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442681	61442696	Frame_Shift_Del	TTCTTTGCTACTGGAA	-	p.IPVAKK314fs
HNSC	TCGA-CV-7416-01	SHKBP1	ENST00000291842.5,ENST00000599575.1,ENST00000595945.1,ENST00000594973.1,ENST00000600718.1,ENST00000600733.1,ENST00000598907.1,ENST00000598201.1	chr19	41086229:41086391:41086471:41086562:41086651:41086744,	41086472	41086562	41086523	41086527	Frame_Shift_Del	GGATC	-	p.WI205fs
HNSC	TCGA-CQ-6220-01	NOTCH1	ENST00000277541.6	chr9	139412203:139412389:139412588:139412744:139413042:139413276,	139412589	139412744	139412593	139412594	Frame_Shift_Ins	-	GA	p.S417fs
HNSC	TCGA-CN-4738-01	TUFT1	ENST00000353024.3,ENST00000538902.1,ENST00000392712.3,ENST00000368848.2,ENST00000368849.3	chr1	151546745:151546874:151547386:151547481:151551196:151551302,	151547387	151547481	151547445	151547445	Frame_Shift_Del	G	-	p.R261fs
HNSC	TCGA-UF-A7JA-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104863	168104864	Frame_Shift_Ins	-	A	p.K2321fs
HNSC	TCGA-UF-A7JA-01	SPTBN4	ENST00000595535.1,ENST00000338932.3,ENST00000352632.3,ENST00000598249.1,ENST00000344104.3	chr19	41012142:41012293:41018512:41019461:41021217:41021355,	41018513	41019461	41018683	41018683	Frame_Shift_Del	A	-	p.K663fs
HNSC	TCGA-CV-6962-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229623212:229623360:229625701:229625849:229631241:229631312,	229625702	229625849	229625736	229625736	Frame_Shift_Del	G	-	p.T387fs
HNSC	TCGA-CV-6962-01	SCAMP1	ENST00000538629.1,ENST00000339292.4,ENST00000320280.7,ENST00000508822.1	chr5	77712426:77712473:77714598:77714727:77717624:77717784,	77714599	77714727	77714718	77714718	Frame_Shift_Del	T	-	p.L155fs
HNSC	TCGA-CV-6962-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248899	44248899	Frame_Shift_Del	C	-	p.G204fs
HNSC	TCGA-CV-6962-01	ABHD3	ENST00000580981.1	chr18	19237064:19237113:19239130:19239304:19243638:19244191,19237064:19237113:19239130:19239304:19244078:19244191,19237064:19237113:19239130:19239304:19282276:19282459,	19239131	19239304	19239184	19239191	Frame_Shift_Del	GTTCAGTG	-	p.PLN66fs
HNSC	TCGA-F7-A622-01	ANKRD44	ENST00000424317.1,ENST00000282272.8,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197873667:197873755:197878234:197878436:197889919:197889991,	197878235	197878436	197878278	197878279	Frame_Shift_Del	AA	-	p.F602fs
HNSC	TCGA-CV-7097-01	ABCF1	ENST00000475993.1,ENST00000376545.3,ENST00000326195.8	chr6	30551581:30551667:30551968:30552108:30552194:30552343,	30551969	30552108	30551996	30551997	Frame_Shift_Ins	-	C	p.A377fs
HNSC	TCGA-CV-7097-01	NAPA	ENST00000597118.1,ENST00000595227.1,ENST00000593905.1,ENST00000263354.3,ENST00000593761.1,ENST00000598615.1,ENST00000594001.1,ENST00000601208.1	chr19	47996217:47996302:47996375:47996431:47996672:47996750,	47996376	47996431	47996389	47996390	Frame_Shift_Ins	-	G	p.G155fs
HNSC	TCGA-CR-5250-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000443875.1,ENST00000402681.3,ENST00000541647.1	chr12	7170193:7170371:7171570:7171696:7172403:7172482,	7171571	7171696	7171652	7171653	Frame_Shift_Ins	-	C	p.S158fs
HNSC	TCGA-CR-5250-01	TRAF3	ENST00000351691.5,ENST00000347662.4	chr14	103342694:103342862:103352525:103352606:103355896:103355971,103342694:103342862:103352525:103352606:103357661:103357754,	103352526	103352606	103352585	103352585	Frame_Shift_Del	C	-	p.V210fs
HNSC	TCGA-CN-6021-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278600	114278601	Frame_Shift_Ins	-	A	p.N2943fs
HNSC	TCGA-CN-6021-01	HPSE2	ENST00000370552.3,ENST00000370546.1	chr10	100453656:100453704:100481413:100481585:100503639:100503809,	100481414	100481585	100481543	100481543	Frame_Shift_Del	C	-	p.G276fs
HNSC	TCGA-CN-6021-01	SLC2A13	ENST00000280871.4	chr12	40158538:40158660:40223904:40224030:40258563:40258684,	40223905	40224030	40223995	40223995	Frame_Shift_Del	C	-	p.G452fs
HNSC	TCGA-CN-6021-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579494	7579495	Frame_Shift_Ins	-	G	p.N65fs
HNSC	TCGA-CN-6021-01	TSPYL2	ENST00000375442.4,ENST00000463525.1,ENST00000578306.1,ENST00000553557.1	chrX	53113990:53114048:53114135:53114281:53114408:53114503,	53114136	53114281	53114157	53114157	Frame_Shift_Del	C	-	p.T340fs
HNSC	TCGA-CQ-5330-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393494	65393495	Frame_Shift_Ins	-	C	p.E213fs
HNSC	TCGA-CQ-6229-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971048	21971058	Frame_Shift_Del	GCCGCGCCCCG	-	p.RGAA115fs
HNSC	TCGA-CQ-6229-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971048	21971058	Frame_Shift_Del	GCCGCGCCCCG	-	p.RGAA115fs
HNSC	TCGA-CQ-6229-01	MAPRE1	ENST00000375571.5	chr20	31421522:31421668:31424439:31424647:31427540:31427662,	31424440	31424647	31424527	31424528	Frame_Shift_Del	TA	-	p.Y119fs
HNSC	TCGA-HD-A634-01	PLA2G4A	ENST00000442353.2	chr1	186798121:186798167:186823417:186823519:186839566:186839648,	186823418	186823519	186823502	186823502	Frame_Shift_Del	C	-	p.P6fs
HNSC	TCGA-HD-A634-01	CLINT1	ENST00000530742.1,ENST00000523094.1,ENST00000296951.5,ENST00000523908.1	chr5	157214609:157215000:157216370:157216575:157218710:157218732,	157216371	157216575	157216481	157216485	Frame_Shift_Del	GGCAA	-	p.LP473fs
HNSC	TCGA-HD-A634-01	CLINT1	ENST00000518855.1,ENST00000411809.2	chr5	157214609:157215000:157216370:157216521:157218710:157218732,	157216371	157216521	157216481	157216485	Frame_Shift_Del	GGCAA	-	p.LP473fs
HNSC	TCGA-HD-A634-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41057780:41058003:41060312:41060533:41064555:41064746,	41060313	41060533	41060380	41060380	Frame_Shift_Del	G	-	p.V1557fs
HNSC	TCGA-CV-A6K2-01	FBXW8	ENST00000455858.2,ENST00000309909.5	chr12	117383168:117383333:117387422:117387511:117402501:117402659,	117387423	117387511	117387508	117387509	Frame_Shift_Ins	-	G	p.G159fs
HNSC	TCGA-CN-A499-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-CN-A63T-01	SMC4	ENST00000469858.1,ENST00000344722.5,ENST00000462787.1,ENST00000360111.2,ENST00000357388.3,ENST00000462668.1,ENST00000469762.1	chr3	160135510:160135744:160137145:160137331:160138527:160138689,	160137146	160137331	160137291	160137291	Frame_Shift_Del	A	-	p.E606fs
HNSC	TCGA-CN-A63T-01	SLC16A5	ENST00000585293.1,ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000329783.4	chr17	73085245:73085399:73089683:73089930:73094132:73094276,	73089684	73089930	73089780	73089780	Frame_Shift_Del	C	-	p.L18fs
HNSC	TCGA-CV-7437-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579336	7579336	Frame_Shift_Del	C	-	p.G117fs
HNSC	TCGA-CV-5430-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087209	117087209	Frame_Shift_Del	A	-	p.S30fs
HNSC	TCGA-CV-5430-01	PDE4DIP	ENST00000528552.1,ENST00000369348.3,ENST00000531369.1,ENST00000530078.1,ENST00000532803.1,ENST00000313382.9,ENST00000369359.4,ENST00000533163.1,ENST00000527063.1,ENST00000530740.1	chr1	144955215:144955292:144994590:144994701:145015859:145015938,	144994591	144994701	144994620	144994623	Frame_Shift_Del	CATA	-	p.YE174fs
HNSC	TCGA-CV-5430-01	FARP2	ENST00000412332.1	chr2	242432807:242432859:242433422:242433556:242433891:242434255,	242433423	242433556	242433486	242433487	Frame_Shift_Ins	-	G	p.P1038fs
HNSC	TCGA-CV-5430-01	ERLIN2	ENST00000519872.1,ENST00000523887.1,ENST00000276461.5	chr8	37594144:37594196:37595425:37595547:37597882:37597964,	37595426	37595547	37595472	37595473	Frame_Shift_Ins	-	T	p.V11fs
HNSC	TCGA-CV-5430-01	WNK1	ENST00000537687.1	chr12	971400:971436:977031:978270:980430:980514,	977032	978270	977668	977669	Frame_Shift_Del	CT	-	p.L926fs
HNSC	TCGA-CV-5430-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579410	7579420	Frame_Shift_Del	GGGGCCAGGAG	-	p.PSWPL89fs
HNSC	TCGA-BA-5151-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645241	67645242	Frame_Shift_Ins	-	G	p.G169fs
HNSC	TCGA-P3-A6T2-01	CRLF1	ENST00000392386.3	chr19	18704046:18704389:18704874:18704917:18705056:18705244,	18704875	18704917	18704897	18704898	Frame_Shift_Ins	-	T	p.W411fs
HNSC	TCGA-P3-A6T2-01	ZNF234	ENST00000592437.1,ENST00000426739.2	chr19	44652923:44653050:44654565:44654658:44660404:44660507,	44654566	44654658	44654608	44654608	Frame_Shift_Del	A	-	p.E62fs
HNSC	TCGA-BA-4074-01	ACSF2	ENST00000502667.1,ENST00000504392.1,ENST00000510410.1,ENST00000541920.1,ENST00000427954.2,ENST00000300441.4	chr17	48539896:48539946:48540516:48540612:48540755:48540913,	48540517	48540612	48540530	48540531	Frame_Shift_Ins	-	C	p.T294fs
HNSC	TCGA-CR-7395-01	ITGB3BP	ENST00000460251.1	chr1	63920575:63920639:63944434:63944504:63955753:63955885,63923547:63924044:63944434:63944504:63955753:63955885,	63944435	63944504	63944501	63944502	Frame_Shift_Del	TT	-	p.K102fs
HNSC	TCGA-CR-7395-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131442	202131443	Frame_Shift_Ins	-	C	p.S137fs
HNSC	TCGA-CR-7395-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131442	202131443	Frame_Shift_Ins	-	C	p.S137fs
HNSC	TCGA-BB-A5HZ-01	ABI3BP	ENST00000383691.4,ENST00000471901.1,ENST00000495591.1,ENST00000284322.5,ENST00000487012.1,ENST00000471714.1	chr3	100511534:100511612:100513766:100513847:100515252:100515312,	100513767	100513847	100513802	100513802	Frame_Shift_Del	G	-	p.P1295fs
HNSC	TCGA-BB-A5HZ-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638683	176638693	Frame_Shift_Del	GGCCACTTAAC	-	p.GHLT1095fs
HNSC	TCGA-CR-7365-01	DDX43	ENST00000370336.4	chr6	74111641:74111713:74114412:74114494:74115401:74115558,	74114413	74114494	74114465	74114466	Frame_Shift_Ins	-	A	p.V208fs
HNSC	TCGA-CR-7365-01	NOTCH1	ENST00000277541.6	chr9	139409934:139410168:139410432:139410546:139411723:139411837,	139410433	139410546	139410477	139410477	Frame_Shift_Del	T	-	p.K542fs
HNSC	TCGA-CR-7365-01	MTHFD1	ENST00000554677.1,ENST00000545908.1,ENST00000216605.8	chr14	64905813:64905890:64906843:64906984:64908102:64908171,	64906844	64906984	64906869	64906879	Frame_Shift_Del	GTGAAATTATG	-	p.SEIM567fs
HNSC	TCGA-CR-5248-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912846	159912846	Frame_Shift_Del	G	-	p.L52fs
HNSC	TCGA-CR-5248-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27558802:27558895:27559064:27559292:27560110:27560175,	27559065	27559292	27559195	27559195	Frame_Shift_Del	C	-	p.A409fs
HNSC	TCGA-CR-5248-01	GTF3C2	ENST00000470115.1	chr2	27558494:27558573:27558783:27559292:27560110:27560175,	27558784	27559292	27559195	27559195	Frame_Shift_Del	C	-	p.A409fs
HNSC	TCGA-CR-5248-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000507711.1	chr4	48607757:48607850:48608454:48608623:48611003:48611084,	48608455	48608623	48608509	48608509	Frame_Shift_Del	A	-	p.F229fs
HNSC	TCGA-CR-5248-01	LEPROTL1	ENST00000321250.8,ENST00000518192.1	chr8	29959455:29959489:29961815:29962002:29994787:29995213,29959455:29959489:29961815:29962002:29963261:29963544,	29961816	29962002	29961841	29961841	Frame_Shift_Del	T	-	p.F41fs
HNSC	TCGA-CR-5248-01	LCOR	ENST00000540664.1	chr10	98711859:98711953:98714709:98715591:98718168:98718272,	98714710	98715591	98715469	98715469	Frame_Shift_Del	A	-	p.G364fs
HNSC	TCGA-CR-5248-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
HNSC	TCGA-CR-5248-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635181	32635181	Frame_Shift_Del	T	-	p.T895fs
HNSC	TCGA-CR-5248-01	ABR	ENST00000544583.2	chr17	1003876:1003975:1028517:1028702:1090093:1090616,	1028518	1028702	1028559	1028559	Frame_Shift_Del	C	-	p.D23fs
HNSC	TCGA-CR-5248-01	SPRED3	ENST00000586301.1,ENST00000587013.1,ENST00000338502.4	chr19	38882851:38882928:38885282:38885426:38886119:38886788,	38885283	38885426	38885397	38885397	Frame_Shift_Del	C	-	p.P225fs
HNSC	TCGA-CV-7104-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237578	33237578	Frame_Shift_Del	C	-	p.A933fs
HNSC	TCGA-MZ-A6I9-01	PNPLA8	ENST00000476592.1	chr7	108142934:108143086:108154587:108154737:108166472:108166515,	108154588	108154737	108154676	108154676	Frame_Shift_Del	G	-	p.T374fs
HNSC	TCGA-KU-A6H7-06	CIAO1	ENST00000272402.2	chr2	96931983:96932227:96933362:96933474:96933573:96933662,	96933363	96933474	96933415	96933415	Frame_Shift_Del	C	-	p.A114fs
HNSC	TCGA-KU-A6H7-06	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081695	144081696	Frame_Shift_Ins	-	A	p.IK193fs
HNSC	TCGA-KU-A6H7-01	FAS	ENST00000352159.4,ENST00000477270.1,ENST00000487314.1,ENST00000357339.2,ENST00000313771.5,ENST00000355740.2,ENST00000355279.2,ENST00000371857.3	chr10	90767456:90767594:90768645:90768754:90770295:90770357,	90768646	90768754	90768732	90768732	Frame_Shift_Del	G	-	p.E141fs
HNSC	TCGA-QK-A8Z8-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183518342:183518423:183518898:183519058:183519885:183520056,	183518899	183519058	183518986	183518987	Frame_Shift_Ins	-	T	p.P1004fs
HNSC	TCGA-QK-A8Z8-01	ZAP70	ENST00000483781.1,ENST00000264972.5	chr2	98330378:98330457:98340478:98340901:98341554:98341705,	98340479	98340901	98340826	98340827	Frame_Shift_Ins	-	C	p.A110fs
HNSC	TCGA-QK-A8Z8-01	ACOXL	ENST00000441974.1	chr2	111753533:111753581:111789203:111789291:111806794:111806865,111753533:111753581:111789203:111789291:111850441:111850543,	111789204	111789291	111789238	111789238	Frame_Shift_Del	G	-	p.W469fs
HNSC	TCGA-QK-A8Z8-01	SLC30A9	ENST00000513699.1,ENST00000264451.7	chr4	42069101:42069209:42072542:42072708:42077673:42077803,	42072543	42072708	42072566	42072566	Frame_Shift_Del	G	-	p.G426fs
HNSC	TCGA-QK-A8Z8-01	NSD1	ENST00000347982.4,ENST00000503056.1,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176696602:176696808:176700672:176700785:176707565:176707584,	176700673	176700785	176700778	176700779	Frame_Shift_Del	AT	-	p.H1872fs
HNSC	TCGA-QK-A8Z8-01	CLTCL1	ENST00000263200.10,ENST00000505027.2,ENST00000442042.2,ENST00000536806.1,ENST00000427926.1,ENST00000353891.5	chr22	19183776:19183926:19183999:19184167:19187244:19187352,	19184000	19184167	19184057	19184057	Frame_Shift_Del	C	-	p.K1328fs
HNSC	TCGA-QK-A8Z8-01	EWSR1	ENST00000397938.2,ENST00000333395.6,ENST00000331029.7,ENST00000437155.2,ENST00000483415.1,ENST00000406548.1,ENST00000332050.6	chr22	29669729:29669853:29674018:29674205:29678378:29678413,	29674019	29674205	29674145	29674146	Frame_Shift_Ins	-	T	p.W118fs
HNSC	TCGA-QK-A8Z8-01	ARAF	ENST00000377045.4	chrX	47424650:47424749:47426037:47426179:47426282:47426310,	47426038	47426179	47426094	47426094	Frame_Shift_Del	C	-	p.A205fs
HNSC	TCGA-CX-7086-01	IAH1	ENST00000497473.1,ENST00000484826.1,ENST00000482918.1,ENST00000470914.1,ENST00000492223.1,ENST00000481688.1,ENST00000545602.1,ENST00000351760.7,ENST00000481367.1,ENST00000487850.1	chr2	9621414:9621576:9624560:9624679:9628275:9628366,	9624561	9624679	9624665	9624666	Frame_Shift_Ins	-	T	p.A71fs
HNSC	TCGA-CX-7086-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089442	32089443	Frame_Shift_Ins	-	TCGT	p.P1963fs
HNSC	TCGA-CX-7086-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577062	7577062	Frame_Shift_Del	T	-	p.K292fs
HNSC	TCGA-CV-7245-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2	chr5	37330139:37330234:37331786:37331897:37333564:37333735,	37331787	37331897	37331833	37331833	Frame_Shift_Del	A	-	p.V528fs
HNSC	TCGA-CV-7245-01	CRISP3	ENST00000433368.2,ENST00000393666.1,ENST00000263045.4,ENST00000371159.4,ENST00000423399.2	chr6	49696420:49696570:49698875:49698964:49700907:49701005,	49698876	49698964	49698934	49698935	Frame_Shift_Ins	-	G	p.L207fs
HNSC	TCGA-CQ-A4CH-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579703	7579703	Frame_Shift_Del	A	-	p.V31fs
HNSC	TCGA-CN-6010-01	SEMA3F	ENST00000002829.3	chr3	50211733:50211783:50212528:50212621:50214200:50214294,	50212529	50212621	50212549	50212549	Frame_Shift_Del	T	-	p.T159fs
HNSC	TCGA-CN-6010-01	FABP6	ENST00000523955.1,ENST00000393980.4,ENST00000393982.1,ENST00000402432.3	chr5	159656552:159656631:159659104:159659280:159661826:159661916,	159659105	159659280	159659192	159659192	Frame_Shift_Del	A	-	p.Q101fs
HNSC	TCGA-CV-A6JU-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176700672:176700785:176707565:176707835:176709465:176709582,	176707566	176707835	176707765	176707766	Frame_Shift_Ins	-	T	p.S1941fs
HNSC	TCGA-CV-A6JU-01	C6orf203	ENST00000311381.5	chr6	107349406:107350001:107360952:107361434:107365463:107365536,107349416:107349475:107360952:107361434:107365463:107365536,	107360953	107361434	107361060	107361061	Frame_Shift_Ins	-	T	p.Q38fs
HNSC	TCGA-CV-A6JU-01	SLC38A4	ENST00000266579.4,ENST00000447411.1	chr12	47170686:47170787:47172071:47172151:47172283:47172559,	47172072	47172151	47172111	47172112	Frame_Shift_Ins	-	A	p.P345fs
HNSC	TCGA-CV-A6JU-01	LRP10	ENST00000551466.1,ENST00000546834.1,ENST00000359591.4	chr14	23345477:23345581:23345897:23346027:23346148:23346262,	23345898	23346027	23345929	23345930	Frame_Shift_Ins	-	A	p.D486fs
HNSC	TCGA-CV-A6JU-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610334	10610335	Frame_Shift_Ins	-	A	p.G126fs
HNSC	TCGA-UF-A719-01	HNRNPDL	ENST00000502762.1,ENST00000602300.1,ENST00000295470.5,ENST00000349655.4	chr4	83348585:83348717:83349170:83349332:83349430:83349599,	83349171	83349332	83349206	83349210	Frame_Shift_Del	CTTCA	-	p.SEE245fs
HNSC	TCGA-UF-A719-01	PHLDB3	ENST00000595498.1,ENST00000292140.5	chr19	43990931:43991022:43991175:43991275:43998853:43998902,	43991176	43991275	43991227	43991227	Frame_Shift_Del	C	-	p.E400fs
HNSC	TCGA-BA-5153-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452996	195452997	Frame_Shift_Del	AG	-	p.R337fs
HNSC	TCGA-BA-A6D8-01	WNT4	ENST00000542383.1,ENST00000290167.6	chr1	22446520:22447010:22447703:22447846:22447937:22448069,	22447704	22447846	22447766	22447767	Frame_Shift_Ins	-	TC	p.Q176fs
HNSC	TCGA-CN-A49C-01	SLC39A9	ENST00000555840.1	chr14	69922448:69922583:69925079:69925446:69928413:69929098,	69925080	69925446	69925126	69925135	Frame_Shift_Del	TGCTTTTCTC	-	p.MLFS181fs
HNSC	TCGA-BA-A6DF-01	PTPN2	ENST00000309660.5,ENST00000589216.1,ENST00000353319.4,ENST00000591497.1,ENST00000327283.3	chr18	12817154:12817264:12825808:12825943:12830941:12831040,12817179:12817364:12825808:12825943:12830941:12831040,	12825809	12825943	12825830	12825845	Frame_Shift_Del	TAGATGTACTGTATAA	-	p.YYTVHL153fs
HNSC	TCGA-BA-A6DF-01	APOO	ENST00000379220.3,ENST00000490078.1	chrX	23897031:23897151:23898961:23899069:23925810:23926020,	23898962	23899069	23898999	23898999	Frame_Shift_Del	T	-	p.K27fs
HNSC	TCGA-CR-6493-01	SSB	ENST00000474273.1,ENST00000260956.4,ENST00000409333.1	chr2	170663480:170663581:170664991:170665063:170665369:170665412,	170664992	170665063	170665008	170665008	Frame_Shift_Del	A	-	p.K192fs
HNSC	TCGA-DQ-5624-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578183	7578184	Frame_Shift_Ins	-	GGCT	p.-221fs
HNSC	TCGA-F7-8298-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578237	7578261	Frame_Shift_Del	CTCCACACGCAAATTTCCTTCCACT	-	p.RVEGNLRVE196fs
HNSC	TCGA-CN-5358-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.R209fs
HNSC	TCGA-H7-A6C5-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134040	128134040	Frame_Shift_Del	G	-	p.P503fs
HNSC	TCGA-CR-6477-01	PMPCB	ENST00000453466.1,ENST00000444457.1,ENST00000420236.2,ENST00000428154.1,ENST00000249269.4	chr7	102950761:102950922:102952089:102952175:102952254:102952343,	102952090	102952175	102952157	102952158	Frame_Shift_Ins	-	T	p.V408fs
HNSC	TCGA-CR-6477-01	LZTS2	ENST00000370223.3,ENST00000370220.1	chr10	102762555:102762703:102763263:102763923:102765214:102765472,	102763264	102763923	102763471	102763475	Frame_Shift_Del	AGTGG	-	p.SG206fs
HNSC	TCGA-CR-6477-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Frame_Shift_Del	G	-	p.R342fs
HNSC	TCGA-BA-A6DG-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6825313:6825417:6826622:6826722:6828086:6828182,	6826623	6826722	6826656	6826656	Frame_Shift_Del	G	-	p.V287fs
HNSC	TCGA-CN-4734-01	EXOSC8	ENST00000474661.1,ENST00000489088.1,ENST00000389704.3,ENST00000239893.5	chr13	37577070:37577144:37578652:37578698:37580056:37580162,	37578653	37578698	37578686	37578686	Frame_Shift_Del	A	-	p.K76fs
HNSC	TCGA-CN-4734-01	EXOSC8	ENST00000488779.1	chr13	37577070:37577144:37578613:37578698:37580056:37580162,	37578614	37578698	37578686	37578686	Frame_Shift_Del	A	-	p.K76fs
HNSC	TCGA-RS-A6TO-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910692	29910693	Frame_Shift_Ins	-	A	p.G78fs
HNSC	TCGA-RS-A6TO-01	ZFHX4	ENST00000519536.1,ENST00000521891.2,ENST00000518282.1	chr8	77745573:77745642:77754890:77755007:77761230:77761307,	77754891	77755007	77754951	77754951	Frame_Shift_Del	A	-	p.E1152fs
HNSC	TCGA-IQ-A61O-01	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682418	108682419	Frame_Shift_Ins	-	T	p.K881fs
HNSC	TCGA-IQ-A61O-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150299404:150299533:150300986:150301052,150293435:150293549:150299404:150299533:150300986:150301052,	150299405	150299533	150299510	150299510	Frame_Shift_Del	A	-	p.K536fs
HNSC	TCGA-HD-8635-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107601993:107602121:107603349:107603508:107604996:107605132,	107603350	107603508	107603497	107603498	Frame_Shift_Ins	-	A	p.S594fs
HNSC	TCGA-BB-4227-01	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000434450.1,ENST00000324698.6	chr7	123104886:123105063:123109267:123109438:123119848:123120024,	123109268	123109438	123109372	123109372	Frame_Shift_Del	T	-	p.I493fs
HNSC	TCGA-BB-4227-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156573	50156573	Frame_Shift_Del	C	-	p.T976fs
HNSC	TCGA-CN-5369-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680128	6680128	Frame_Shift_Del	G	-	p.R136fs
HNSC	TCGA-CN-5369-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551296	Frame_Shift_Del	A	-	p.L869fs
HNSC	TCGA-CN-5369-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551296	Frame_Shift_Del	A	-	p.L869fs
HNSC	TCGA-CN-5369-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924483	150924484	Frame_Shift_Ins	-	G	p.I2069fs
HNSC	TCGA-CN-5369-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.K304fs
HNSC	TCGA-CN-5369-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508009	158508009	Frame_Shift_Del	C	-	p.P1114fs
HNSC	TCGA-CN-5369-01	NUP205	ENST00000440390.2,ENST00000285968.6	chr7	135255852:135255995:135258401:135258573:135261017:135261162,	135258402	135258573	135258404	135258404	Frame_Shift_Del	A	-	p.P58fs
HNSC	TCGA-CN-5369-01	PMEL	ENST00000552882.1,ENST00000549413.1,ENST00000548747.1,ENST00000360714.4,ENST00000536427.1,ENST00000547137.1,ENST00000548803.1,ENST00000550590.1,ENST00000549418.1,ENST00000548493.1	chr12	56352330:56352391:56355405:56355516:56359719:56359732,56355227:56355247:56355405:56355516:56359719:56359732,	56355406	56355516	56355458	56355470	Frame_Shift_Del	GTTCCAGGCTTTG	-	p.TKAWN41fs
HNSC	TCGA-CN-5369-01	EIF5	ENST00000216554.3,ENST00000558506.1,ENST00000392715.2	chr14	103805508:103805670:103805975:103806140:103806763:103806898,	103805976	103806140	103805991	103805991	Frame_Shift_Del	A	-	p.K309fs
HNSC	TCGA-CN-5369-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.G607fs
HNSC	TCGA-CN-5369-01	DEDD2	ENST00000596251.1,ENST00000595337.1,ENST00000593804.1	chr19	42703944:42703981:42713851:42713992:42719284:42719404,	42713852	42713992	42713983	42713983	Frame_Shift_Del	G	-	p.P153fs
HNSC	TCGA-IQ-A61I-01	PLCH2	ENST00000449969.1,ENST00000378486.3,ENST00000343889.4,ENST00000419816.2	chr1	2428266:2428449:2428940:2429048:2429961:2430086,	2428941	2429048	2428982	2428982	Frame_Shift_Del	A	-	p.N693fs
HNSC	TCGA-CR-6480-01	SLC1A5	ENST00000594991.1,ENST00000412532.2,ENST00000542575.2,ENST00000593713.1,ENST00000434726.2	chr19	47280467:47280662:47281931:47282165:47285639:47285806,	47281932	47282165	47282157	47282157	Frame_Shift_Del	G	-	p.P278fs
HNSC	TCGA-BA-6871-01	DUSP5	ENST00000369583.3	chr10	112262504:112262627:112266692:112266912:112269777:112270195,	112266693	112266912	112266854	112266854	Frame_Shift_Del	G	-	p.V230fs
HNSC	TCGA-BA-A4IH-01	EPS15L1	ENST00000602022.1,ENST00000596151.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000602009.1,ENST00000592031.1,ENST00000535753.2	chr19	16528362:16528448:16528758:16528915:16532129:16532244,	16528759	16528915	16528778	16528785	Frame_Shift_Del	TCCGAAGG	-	p.PSE207fs
HNSC	TCGA-BA-6873-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418601	122418602	Frame_Shift_Ins	-	A	p.P401fs
HNSC	TCGA-BA-6873-01	NOTCH1	ENST00000277541.6	chr9	139412203:139412389:139412588:139412744:139413042:139413276,	139412589	139412744	139412704	139412704	Frame_Shift_Del	G	-	p.P380fs
HNSC	TCGA-CN-5359-01	ZNF337	ENST00000481610.1,ENST00000376436.1,ENST00000252979.5	chr20	25657584:25657673:25666202:25666298:25666631:25666758,	25666203	25666298	25666234	25666234	Frame_Shift_Del	T	-	p.E74fs
HNSC	TCGA-MT-A7BN-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100977562:100977658:100990144:100990303:100994164:100994344,	100990145	100990303	100990177	100990178	Frame_Shift_Ins	-	T	p.NG1162fs
HNSC	TCGA-MT-A7BN-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578207	7578207	Frame_Shift_Del	A	-	p.H214fs
HNSC	TCGA-HD-A633-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971128	21971128	Frame_Shift_Del	G	-	p.H91fs
HNSC	TCGA-HD-A633-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971128	21971128	Frame_Shift_Del	G	-	p.H91fs
HNSC	TCGA-QK-A6IH-01	HDAC2	ENST00000519065.1,ENST00000523334.1,ENST00000519108.1,ENST00000368632.2,ENST00000398283.2	chr6	114261881:114262252:114262871:114262929:114264514:114264670,	114262872	114262929	114262884	114262885	Frame_Shift_Ins	-	T	p.R475fs
HNSC	TCGA-BB-4225-01	ZMYND10	ENST00000442887.1,ENST00000360165.3,ENST00000231749.3	chr3	50380548:50380637:50380737:50380875:50380993:50381047,	50380738	50380875	50380780	50380781	Frame_Shift_Ins	-	C	p.A156fs
HNSC	TCGA-CV-7427-01	IFT81	ENST00000550156.1,ENST00000242591.5,ENST00000552912.1	chr12	110618226:110618376:110628724:110628853:110630421:110630511,	110628725	110628853	110628806	110628806	Frame_Shift_Del	G	-	p.E474fs
HNSC	TCGA-CV-7414-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539265	187539266	Frame_Shift_Ins	-	C	p.E2825fs
HNSC	TCGA-CV-7414-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562741	14562741	Frame_Shift_Del	C	-	p.R357fs
HNSC	TCGA-CV-7446-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-CV-7446-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5266206:5266311:5268416:5268533:5271664:5271763,	5268417	5268533	5268514	5268515	Frame_Shift_Ins	-	CGAAGATT	p.R589fs
HNSC	TCGA-CV-7446-01	B3GNT3	ENST00000318683.6	chr19	17905965:17906015:17918566:17919183:17922379:17922562,	17918567	17919183	17918790	17918802	Frame_Shift_Del	GGCCCCGTGCCAT	-	p.PAPCH58fs
HNSC	TCGA-CV-7446-01	B3GNT3	ENST00000595387.1	chr19	17905965:17906015:17918547:17919183:17922379:17922562,	17918548	17919183	17918790	17918802	Frame_Shift_Del	GGCCCCGTGCCAT	-	p.PAPCH58fs
HNSC	TCGA-IQ-A61G-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-IQ-A61G-01	RAPGEFL1	ENST00000538981.1,ENST00000543876.1,ENST00000436615.3,ENST00000544503.1,ENST00000456989.2,ENST00000264644.6,ENST00000540388.1	chr17	38340465:38340601:38340832:38340930:38345117:38345206,	38340833	38340930	38340867	38340867	Frame_Shift_Del	T	-	p.L51fs
HNSC	TCGA-CV-7177-01	STAC3	ENST00000557176.1	chr12	57638927:57638994:57640586:57640684:57641908:57641981,57638698:57638748:57640586:57640684:57641908:57641981,	57640587	57640684	57640658	57640659	Frame_Shift_Del	AC	-	p.VF177fs
HNSC	TCGA-CV-5441-01	PAK2	ENST00000426668.1,ENST00000327134.3	chr3	196539609:196539722:196541321:196541439:196544927:196545027,	196541322	196541439	196541368	196541368	Frame_Shift_Del	G	-	p.G329fs
HNSC	TCGA-CV-5441-01	NSD1	ENST00000347982.4,ENST00000503056.1,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176696602:176696808:176700672:176700785:176707565:176707584,	176700673	176700785	176700778	176700779	Frame_Shift_Del	AT	-	p.H1872fs
HNSC	TCGA-CV-5441-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157470017	157470018	Frame_Shift_Del	TG	-	p.TV937fs
HNSC	TCGA-CV-5441-01	AIMP2	ENST00000395236.2	chr7	6054776:6054983:6057444:6057676:6062933:6063326,6048946:6049129:6057444:6057676:6062933:6063326,	6057445	6057676	6057627	6057628	Frame_Shift_Ins	-	C	p.KA175fs
HNSC	TCGA-CV-5441-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112598	57112604	Frame_Shift_Del	TGGGTGC	-	p.APK904fs
HNSC	TCGA-BA-4078-01	ANO10	ENST00000350459.4,ENST00000451430.2,ENST00000448045.1,ENST00000396091.3,ENST00000292246.3	chr3	43408380:43408466:43474102:43474219:43591211:43591340,	43474103	43474219	43474181	43474181	Frame_Shift_Del	G	-	p.A612fs
HNSC	TCGA-BA-4078-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33656432:33656558:33657014:33657187:33657810:33657975,	33657015	33657187	33657174	33657175	Frame_Shift_Ins	-	G	p.R2285fs
HNSC	TCGA-BA-4078-01	SF1	ENST00000334944.5	chr11	64532761:64532990:64533422:64533627:64534371:64534409,	64533423	64533627	64533489	64533490	Frame_Shift_Ins	-	G	p.A574fs
HNSC	TCGA-BA-4078-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698946	17698946	Frame_Shift_Del	C	-	p.A895fs
HNSC	TCGA-BA-4078-01	PIGN	ENST00000588748.1,ENST00000585923.1,ENST00000400334.3,ENST00000591238.1,ENST00000357637.5,ENST00000589720.1	chr18	59815554:59815571:59821777:59821884:59824361:59824460,	59821778	59821884	59821827	59821827	Frame_Shift_Del	C	-	p.G167fs
HNSC	TCGA-BA-4078-01	RPS6KA3	ENST00000379548.4,ENST00000540702.1,ENST00000544447.1,ENST00000379565.3	chrX	20194551:20194616:20195113:20195202:20204413:20204484,	20195114	20195202	20195158	20195159	Frame_Shift_Del	CT	-	p.S297fs
HNSC	TCGA-P3-A6T4-01	DDIT3	ENST00000551116.1	chr12	57910735:57910963:57911051:57911378:57911488:57911536,	57911052	57911378	57911229	57911229	Frame_Shift_Del	A	-	p.Y10fs
HNSC	TCGA-P3-A6T4-01	DDIT3	ENST00000547526.1	chr12	57910735:57910963:57911051:57911325:57911488:57911536,	57911052	57911325	57911229	57911229	Frame_Shift_Del	A	-	p.Y10fs
HNSC	TCGA-CR-5249-01	AGAP1	ENST00000448025.1,ENST00000428334.2,ENST00000304032.8	chr2	236792038:236792093:236817381:236817550:236877105:236877267,236792038:236792093:236817381:236817550:236839408:236839567,	236817382	236817550	236817460	236817461	Frame_Shift_Ins	-	G	p.S677fs
HNSC	TCGA-BA-A6DL-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638999	176639006	Frame_Shift_Del	GGGATGAG	-	p.RDE1200fs
HNSC	TCGA-CV-7433-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026701	48026714	Frame_Shift_Del	CTGGAAGGTGATCC	-	p.LEGDP527fs
HNSC	TCGA-CV-7433-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026701	48026714	Frame_Shift_Del	CTGGAAGGTGATCC	-	p.LEGDP527fs
HNSC	TCGA-CV-7433-01	PLG	ENST00000308192.9	chr6	161137676:161137795:161139325:161139488:161139724:161139870,	161139326	161139488	161139457	161139457	Frame_Shift_Del	C	-	p.H307fs
HNSC	TCGA-BA-A6DI-01	LPCAT3	ENST00000261407.4	chr12	7086528:7086687:7086759:7086907:7087502:7087669,	7086760	7086907	7086862	7086863	Frame_Shift_Ins	-	G	p.S362fs
HNSC	TCGA-BA-A6DI-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579546	7579547	Frame_Shift_Ins	-	G	p.R47fs
HNSC	TCGA-BA-5149-01	NOTCH1	ENST00000277541.6	chr9	139410432:139410546:139411723:139411837:139412203:139412389,	139411724	139411837	139411734	139411740	Frame_Shift_Del	CTCGCAC	-	p.QCE513fs
HNSC	TCGA-BA-5149-01	POLR3H	ENST00000431534.1	chr22	41928122:41928161:41928607:41928749:41936702:41936799,	41928608	41928749	41928719	41928719	Frame_Shift_Del	A	-	p.F80fs
HNSC	TCGA-BA-5149-01	POLR3H	ENST00000432789.1,ENST00000355209.4,ENST00000407461.1,ENST00000396504.2	chr22	41928122:41928161:41928662:41928749:41936702:41936799,	41928663	41928749	41928719	41928719	Frame_Shift_Del	A	-	p.F80fs
HNSC	TCGA-CV-5435-01	PPP1R1C	ENST00000409702.1	chr2	182928457:182928518:182981933:182982195:182993700:182993794,	182981934	182982195	182981993	182981993	Frame_Shift_Del	A	-	p.N101fs
HNSC	TCGA-CV-5435-01	PPP1R1C	ENST00000280295.3,ENST00000409137.3	chr2	182928457:182928518:182981933:182982028:182993700:182993794,	182981934	182982028	182981993	182981993	Frame_Shift_Del	A	-	p.N101fs
HNSC	TCGA-CV-5435-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743569	130743570	Frame_Shift_Ins	-	G	p.R194fs
HNSC	TCGA-BB-A6UO-01	DYNC1I2	ENST00000409773.1,ENST00000397119.3,ENST00000409453.1,ENST00000452242.1,ENST00000438879.1,ENST00000422646.1,ENST00000534253.2,ENST00000482454.1,ENST00000263811.4,ENST00000443458.1,ENST00000409317.1,ENST00000411953.1	chr2	172563796:172563887:172569276:172569336:172571837:172571860,	172569277	172569336	172569318	172569319	Frame_Shift_Ins	-	C	p.L126fs
HNSC	TCGA-BB-A6UO-01	HNRNPH1	ENST00000523137.1	chr5	179045239:179045324:179046269:179046408:179047892:179047960,179045239:179045324:179046269:179046408:179048242:179048336,	179046270	179046408	179046282	179046286	Frame_Shift_Del	CTTTC	-	p.ER174fs
HNSC	TCGA-BB-A6UO-01	HNRNPH1	ENST00000521173.1	chr5	179045239:179045324:179046269:179046361:179047892:179047960,	179046270	179046361	179046282	179046286	Frame_Shift_Del	CTTTC	-	p.ER174fs
HNSC	TCGA-BB-A6UO-01	KATNA1	ENST00000367411.2,ENST00000444282.1,ENST00000335647.5,ENST00000420200.1,ENST00000494504.1	chr6	149924499:149924509:149925796:149925918:149944238:149944247,	149925797	149925918	149925823	149925824	Frame_Shift_Del	TA	-	p.I200fs
HNSC	TCGA-H7-8502-01	SHMT2	ENST00000553837.1,ENST00000553474.1,ENST00000556825.1,ENST00000557529.1,ENST00000555634.1,ENST00000557348.1,ENST00000557433.1,ENST00000328923.3,ENST00000555116.1,ENST00000555774.1,ENST00000555563.1,ENST00000414700.3,ENST00000393827.4,ENST00000557487.1,ENST00000449049.3	chr12	57626265:57626358:57626486:57626626:57626962:57627022,	57626487	57626626	57626532	57626533	Frame_Shift_Ins	-	T	p.Q255fs
HNSC	TCGA-H7-8502-01	APOH	ENST00000577982.1	chr17	64222145:64222242:64224137:64224314:64225433:64225535,	64224138	64224314	64224284	64224285	Frame_Shift_Ins	-	A	p.H32fs
HNSC	TCGA-H7-8502-01	RUNX1	ENST00000455571.1	chr21	36252902:36253010:36259139:36259393:36265221:36265260,36252902:36253010:36259139:36259393:36421138:36421255,	36259140	36259393	36259279	36259279	Frame_Shift_Del	A	-	p.L44fs
HNSC	TCGA-CR-7394-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
HNSC	TCGA-CV-7180-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3149731:3149934:3156019:3156146:3158798:3158926,	3156020	3156146	3156043	3156043	Frame_Shift_Del	C	-	p.N1174fs
HNSC	TCGA-CV-7425-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124521176:124521275:124522163:124522718:124525783:124525928,	124522164	124522718	124522529	124522529	Frame_Shift_Del	G	-	p.M327fs
HNSC	TCGA-IQ-A61E-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540420	187540426	Frame_Shift_Del	AATGACA	-	p.FVI2438fs
HNSC	TCGA-IQ-A61E-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
HNSC	TCGA-CV-A6K0-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983149:2983583:2983716:2983980:2987121:2987271,	2983717	2983980	2983952	2983952	Frame_Shift_Del	C	-	p.R495fs
HNSC	TCGA-CV-6433-01	TDRD7	ENST00000422139.2,ENST00000355295.4	chr9	100203939:100204157:100222459:100223046:100227123:100227310,	100222460	100223046	100222899	100222899	Frame_Shift_Del	A	-	p.Q432fs
HNSC	TCGA-CV-6433-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
HNSC	TCGA-CQ-7072-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898227	53898228	Frame_Shift_Ins	-	A	p.V157fs
HNSC	TCGA-CV-7095-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389837	11389837	Frame_Shift_Del	A	-	p.W138fs
HNSC	TCGA-CV-7095-01	PMS1	ENST00000441310.2,ENST00000421722.1,ENST00000409985.1,ENST00000450931.1,ENST00000424766.1,ENST00000374826.4,ENST00000409823.3,ENST00000447232.2,ENST00000424059.1	chr2	190656535:190656667:190660494:190660677:190670377:190670480,	190660495	190660677	190660652	190660653	Frame_Shift_Ins	-	G	p.W97fs
HNSC	TCGA-CV-7095-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000417784.1,ENST00000317096.4	chr3	183547296:183547497:183551279:183551377:183558357:183558406,183547296:183547497:183551279:183551377:183551511:183551613,	183551280	183551377	183551318	183551318	Frame_Shift_Del	A	-	p.F330fs
HNSC	TCGA-CV-7095-01	TRIM65	ENST00000269383.3	chr17	73887357:73887428:73888091:73888266:73888347:73888384,73887893:73887959:73888091:73888266:73888347:73888384,	73888092	73888266	73888194	73888194	Frame_Shift_Del	G	-	p.L273fs
HNSC	TCGA-DQ-7592-01	AGPS	ENST00000264167.4	chr2	178310273:178310354:178326620:178326746:178333143:178333252,	178326621	178326746	178326624	178326624	Frame_Shift_Del	A	-	p.K292fs
HNSC	TCGA-DQ-7592-01	ESR1	ENST00000440973.1	chr6	152023009:152023140:152128977:152129499:152163731:152163922,	152128978	152129499	152129337	152129338	Frame_Shift_Ins	-	C	p.S97fs
HNSC	TCGA-BB-7870-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27878425	27878425	Frame_Shift_Del	C	-	p.D68fs
HNSC	TCGA-BB-7870-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899920	Frame_Shift_Del	A	-	p.K134fs
HNSC	TCGA-BB-7870-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120769240:120769348:120775998:120776202:120811055:120811169,	120775999	120776202	120776131	120776131	Frame_Shift_Del	G	-	p.G469fs
HNSC	TCGA-BB-7870-01	SCFD1	ENST00000484733.2,ENST00000556534.1,ENST00000463622.2,ENST00000458591.2,ENST00000469043.1,ENST00000421551.3,ENST00000544052.2,ENST00000396629.2,ENST00000557076.1,ENST00000553693.1	chr14	31108982:31109070:31112521:31112611:31118733:31118789,	31112522	31112611	31112596	31112596	Frame_Shift_Del	T	-	p.F201fs
HNSC	TCGA-BB-7870-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578255	7578255	Frame_Shift_Del	T	-	p.E198fs
HNSC	TCGA-CV-5432-01	PLSCR1	ENST00000462666.1,ENST00000487389.1,ENST00000472349.1,ENST00000342435.4,ENST00000494568.1	chr3	146243391:146243434:146246400:146246618:146251256:146251329,	146246401	146246618	146246596	146246597	Frame_Shift_Ins	-	T	p.S39fs
HNSC	TCGA-CV-5432-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82580192	82580192	Frame_Shift_Del	C	-	p.E3238fs
HNSC	TCGA-CV-5432-01	APBA3	ENST00000588984.1,ENST00000316757.3,ENST00000590064.1	chr19	3751431:3751551:3752505:3752718:3752817:3752988,	3752506	3752718	3752611	3752611	Frame_Shift_Del	C	-	p.G430fs
HNSC	TCGA-IQ-7631-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
HNSC	TCGA-IQ-7631-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
HNSC	TCGA-UF-A7JD-01	FAM86B2	ENST00000393715.3	chr8	12283403:12283498:12285023:12285315:12286489:12286623,	12285024	12285315	12285143	12285143	Frame_Shift_Del	C	-	p.G77fs
HNSC	TCGA-UF-A7JD-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.AK201fs
HNSC	TCGA-CV-7253-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372692	175372692	Frame_Shift_Del	C	-	p.G187fs
HNSC	TCGA-CV-7253-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638656	176638662	Frame_Shift_Del	AGTAAAG	-	p.SKE1086fs
HNSC	TCGA-CV-7253-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616583	116616584	Frame_Shift_Ins	-	A	p.S538fs
HNSC	TCGA-CV-7253-01	RASA3	ENST00000542651.1	chr13	114817526:114817630:114839194:114839312:114897909:114898027,	114839195	114839312	114839224	114839225	Frame_Shift_Ins	-	A	p.*48fs
HNSC	TCGA-CV-7253-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000557866.1,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44925702:44925835:44941063:44941209:44943688:44943842,	44941064	44941209	44941194	44941195	Frame_Shift_Del	AG	-	p.L491fs
HNSC	TCGA-CV-7253-01	RIPK4	ENST00000332512.3,ENST00000544709.1,ENST00000542057.1	chr21	43165918:43166022:43166772:43166931:43169313:43169363,	43166773	43166931	43166897	43166898	Frame_Shift_Ins	-	A	p.G236fs
HNSC	TCGA-CQ-6223-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100775155:100775350:100776975:100777174:100778774:100778875,	100776976	100777174	100777046	100777047	Frame_Shift_Ins	-	A	p.SV257fs
HNSC	TCGA-T3-A92N-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.LK72fs
HNSC	TCGA-T3-A92N-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35295218:35295362:35331249:35331528:35343697:35343868,	35331250	35331528	35331380	35331381	Frame_Shift_Ins	-	A	p.S88fs
HNSC	TCGA-T3-A92M-01	SLC22A5	ENST00000435065.2,ENST00000479605.1,ENST00000245407.3,ENST00000461013.1	chr5	131724612:131724713:131726381:131726596:131728124:131728307,	131726382	131726596	131726594	131726595	Frame_Shift_Ins	-	A	p.R422fs
HNSC	TCGA-T3-A92M-01	SLC22A5	ENST00000448810.1	chr5	131724612:131724713:131726467:131726596:131728124:131728307,	131726468	131726596	131726594	131726595	Frame_Shift_Ins	-	A	p.R422fs
HNSC	TCGA-CV-5434-01	PLSCR1	ENST00000462666.1,ENST00000487389.1,ENST00000472349.1,ENST00000342435.4,ENST00000494568.1	chr3	146243391:146243434:146246400:146246618:146251256:146251329,	146246401	146246618	146246596	146246597	Frame_Shift_Ins	-	T	p.S39fs
HNSC	TCGA-CV-5434-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641028	96641029	Frame_Shift_Ins	-	C	p.T173fs
HNSC	TCGA-CV-5434-01	RETSAT	ENST00000449375.1,ENST00000295802.4,ENST00000457495.2	chr2	85570233:85570504:85570761:85570921:85571361:85571451,85570233:85570504:85570761:85570921:85571121:85571288,	85570762	85570921	85570875	85570878	Frame_Shift_Del	AGAT	-	p.YL526fs
HNSC	TCGA-CQ-5331-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
HNSC	TCGA-CQ-5331-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
HNSC	TCGA-CQ-5331-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827881	48827882	Frame_Shift_Ins	-	A	p.EK386fs
HNSC	TCGA-QK-A6V9-01	VWF	ENST00000261405.5	chr12	6058039:6058369:6058951:6059049:6061009:6061049,	6058952	6059049	6058985	6058986	Frame_Shift_Ins	-	T	p.I2740fs
HNSC	TCGA-QK-A6V9-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114537523:114537645:114538485:114538608:114541041:114541164,	114538486	114538608	114538573	114538574	Frame_Shift_Del	CC	-	p.GE208fs
HNSC	TCGA-CV-7183-01	WDTC1	ENST00000447062.2,ENST00000361771.3,ENST00000319394.3	chr1	27609828:27609940:27614164:27614352:27618705:27618888,	27614165	27614352	27614251	27614252	Frame_Shift_Ins	-	AT	p.P127fs
HNSC	TCGA-CV-7183-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539580	76539580	Frame_Shift_Del	T	-	p.K74fs
HNSC	TCGA-CV-7183-01	HNRNPD	ENST00000503822.1,ENST00000543098.1,ENST00000352301.4	chr4	83279910:83279973:83280623:83280792:83292680:83292737,83279910:83279973:83280623:83280792:83294598:83294639,	83280624	83280792	83280734	83280735	Frame_Shift_Ins	-	C	p.Y116fs
HNSC	TCGA-HD-A6I0-01	RPS6KA1	ENST00000374163.1,ENST00000530003.1,ENST00000526792.1,ENST00000531113.1,ENST00000531382.1,ENST00000374168.2,ENST00000374166.4,ENST00000374162.2	chr1	26885297:26885428:26887216:26887342:26887535:26887625,	26887217	26887342	26887287	26887288	Frame_Shift_Ins	-	CT	p.F429fs
HNSC	TCGA-CQ-5323-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151271143:151271311:151336589:151336742:151356740:151356860,	151336590	151336742	151336690	151336690	Frame_Shift_Del	T	-	p.N2365fs
HNSC	TCGA-CQ-5323-01	FAM83H	ENST00000388913.3	chr8	144806102:144810893:144811136:144811261:144811328:144811493,	144811137	144811261	144811235	144811236	Frame_Shift_Ins	-	C	p.A213fs
HNSC	TCGA-CQ-5323-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7635561:7635600:7635962:7636271:7637691:7637940,	7635963	7636271	7636068	7636069	Frame_Shift_Ins	-	A	p.KS994fs
HNSC	TCGA-CQ-5323-01	KRT5	ENST00000552629.1,ENST00000252242.4,ENST00000549420.1	chr12	52911741:52911776:52911886:52911947:52912729:52912901,	52911887	52911947	52911893	52911894	Frame_Shift_Ins	-	A	p.Q275fs
HNSC	TCGA-CV-7430-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000272273.5,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33590408:33590570:33614250:33614373:33622199:33622349,	33614251	33614373	33614263	33614282	Frame_Shift_Del	AGCTGTGTAACATCCCCGTG	-	p.QLCNIPV1575fs
HNSC	TCGA-CV-7430-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-CV-7430-01	ZNF791	ENST00000458122.3,ENST00000343325.4,ENST00000598225.1,ENST00000597691.1	chr19	12734513:12734640:12735463:12735524:12738534:12738619,	12735464	12735524	12735473	12735473	Frame_Shift_Del	G	-	p.W47fs
HNSC	TCGA-CV-A460-01	MYO16	ENST00000457511.2,ENST00000357550.2,ENST00000356711.2	chr13	109707393:109707474:109707737:109707943:109753132:109753235,	109707738	109707943	109707832	109707838	Frame_Shift_Del	TTGATAA	-	p.FDN1053fs
HNSC	TCGA-CV-7421-01	LEMD2	ENST00000511171.1,ENST00000293760.5,ENST00000510598.1,ENST00000421671.2,ENST00000508327.1,ENST00000513832.1,ENST00000502643.1,ENST00000504692.1	chr6	33744811:33744833:33744914:33745016:33746018:33746116,	33744915	33745016	33744932	33744933	Frame_Shift_Ins	-	TC	p.G414fs
HNSC	TCGA-CQ-A4CE-01	PHIP	ENST00000479165.1,ENST00000275034.4	chr6	79656427:79656591:79657339:79657492:79664530:79664680,	79657340	79657492	79657436	79657437	Frame_Shift_Ins	-	A	p.*1370fs
HNSC	TCGA-CQ-6222-01	PUM1	ENST00000257075.5,ENST00000373741.4,ENST00000498419.1,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3,ENST00000373742.2,ENST00000424085.2	chr1	31426560:31426828:31437520:31437757:31438828:31439044,	31437521	31437757	31437649	31437650	Frame_Shift_Ins	-	A	p.*733fs
HNSC	TCGA-CQ-6222-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150921902	150921902	Frame_Shift_Del	T	-	p.K2929fs
HNSC	TCGA-CV-5978-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000393824.3	chr7	101740643:101740781:101747615:101747739:101754977:101755006,	101747616	101747739	101747722	101747723	Frame_Shift_Ins	-	T	p.C183fs
HNSC	TCGA-CV-5978-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86311590	86311605	Frame_Shift_Del	GTACCGCCAAGGCTGG	-	p.PQPWRY479fs
HNSC	TCGA-CR-7398-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675268	176675269	Frame_Shift_Ins	-	A	p.SK1528fs
HNSC	TCGA-CN-5356-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515266	183515267	Frame_Shift_Ins	-	A	p.K829fs
HNSC	TCGA-CN-5356-01	SH3RF3	ENST00000309415.6,ENST00000418513.1	chr2	110015045:110015399:110035994:110036098:110048956:110049127,	110035995	110036098	110036087	110036088	Frame_Shift_Ins	-	T	p.LP464fs
HNSC	TCGA-CN-5356-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222301780:222301842:222307548:222307734:222308212:222308326,	222307549	222307734	222307601	222307602	Frame_Shift_Ins	-	A	p.R674fs
HNSC	TCGA-CN-5356-01	FAT1	ENST00000441802.2	chr4	187557178:187557389:187557738:187558068:187560875:187560937,	187557739	187558068	187558038	187558039	Frame_Shift_Ins	-	G	p.I1225fs
HNSC	TCGA-CN-5356-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113168483	113168483	Frame_Shift_Del	C	-	p.A3133fs
HNSC	TCGA-CN-5356-01	SLCO2B1	ENST00000341411.4,ENST00000289575.5	chr11	74862257:74862442:74873699:74873830:74875007:74875057,	74873700	74873830	74873807	74873807	Frame_Shift_Del	C	-	p.P42fs
HNSC	TCGA-CQ-6228-01	TMPRSS3	ENST00000474596.1,ENST00000433957.2,ENST00000398405.1,ENST00000476848.1,ENST00000380399.1,ENST00000482761.1,ENST00000291532.3	chr21	43791999:43792888:43795824:43795977:43796649:43796792,	43795825	43795977	43795867	43795873	Frame_Shift_Del	GGTGTAC	-	p.VYT433fs
HNSC	TCGA-CN-4740-01	TFCP2L1	ENST00000464621.1,ENST00000263707.5	chr2	121983137:121983189:121989401:121989544:121991666:121991770,	121989402	121989544	121989435	121989436	Frame_Shift_Ins	-	C	p.A436fs
HNSC	TCGA-CN-4740-01	AKT2	ENST00000489375.1	chr19	40741008:40741054:40741169:40741374:40741796:40741865,	40741170	40741374	40741253	40741254	Frame_Shift_Ins	-	A	p.W394fs
HNSC	TCGA-CN-4740-01	AKT2	ENST00000483166.1,ENST00000579047.1,ENST00000496089.2,ENST00000476247.2,ENST00000392038.2,ENST00000424901.1,ENST00000584288.1,ENST00000578615.1,ENST00000391844.4,ENST00000476266.1,ENST00000497948.1,ENST00000311278.6	chr19	40741008:40741054:40741169:40741257:40741796:40741865,	40741170	40741257	40741253	40741254	Frame_Shift_Ins	-	A	p.W394fs
HNSC	TCGA-CR-5243-01	ANK1	ENST00000520299.1,ENST00000289734.7,ENST00000314214.8	chr8	41513247:41513272:41518947:41519082:41519318:41519459,41513247:41513272:41518947:41519082:41521176:41521260,41513247:41513272:41518947:41519082:41519393:41519459,	41518948	41519082	41518989	41518990	Frame_Shift_Ins	-	T	p.V1905fs
HNSC	TCGA-CR-5243-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81942020:81942196:81944124:81944325:81946201:81946321,	81944125	81944325	81944307	81944308	Frame_Shift_Ins	-	C	p.T639fs
HNSC	TCGA-D6-6516-01	TMEM51	ENST00000451326.2	chr1	15536985:15537058:15541390:15541927:15545821:15545842,15480284:15480450:15541390:15541927:15545821:15545842,15479072:15479280:15541390:15541927:15545821:15545842,	15541391	15541927	15541602	15541603	Frame_Shift_Del	GC	-	p.A7fs
HNSC	TCGA-D6-6516-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121693963:121694092:121694994:121695141:121698853:121698996,	121694995	121695141	121695040	121695041	Frame_Shift_Ins	-	AT	p.L2143fs
HNSC	TCGA-CV-A6JE-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000523756.1,ENST00000522523.1,ENST00000220616.4,ENST00000519178.1	chr8	133995594:133995657:134024145:134024280:134025844:134025928,	134024146	134024280	134024224	134024225	Frame_Shift_Ins	-	T	p.R2114fs
HNSC	TCGA-CV-A6JE-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Frame_Shift_Del	C	-	p.G103fs
HNSC	TCGA-CV-A6JE-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Frame_Shift_Del	C	-	p.G103fs
HNSC	TCGA-CV-A45Z-01	BTN3A2	ENST00000532627.1	chr6	26370746:26370831:26373124:26373325:26373503:26373524,26368948:26369140:26373124:26373325:26373503:26373524,	26373125	26373325	26373200	26373200	Frame_Shift_Del	C	-	p.A264fs
HNSC	TCGA-CV-A45Z-01	SLC4A1	ENST00000262418.6	chr17	42328528:42328700:42328786:42328956:42330485:42330739,	42328787	42328956	42328879	42328879	Frame_Shift_Del	C	-	p.V797fs
HNSC	TCGA-CV-A45Z-01	ZNF750	ENST00000572562.1	chr17	80787804:80788753:80788894:80789362:80797802:80797898,	80788895	80789362	80789123	80789124	Frame_Shift_Ins	-	G	p.R403fs
HNSC	TCGA-CQ-A4CG-01	AIFM3	ENST00000434714.1,ENST00000441376.2,ENST00000333607.6,ENST00000426113.1,ENST00000440238.2,ENST00000405089.1,ENST00000399163.2,ENST00000399167.2	chr22	21327659:21327809:21328046:21328156:21328351:21328385,	21328047	21328156	21328069	21328070	Frame_Shift_Ins	-	G	p.G90fs
HNSC	TCGA-CV-6939-01	TBCK	ENST00000467183.2,ENST00000394708.2,ENST00000432496.2,ENST00000514689.1,ENST00000510927.1,ENST00000394706.3,ENST00000515705.1,ENST00000361687.4,ENST00000273980.5	chr4	107037475:107037535:107092251:107092427:107114765:107114927,	107092252	107092427	107092375	107092382	Frame_Shift_Del	AGTCCAAC	-	p.CWT702fs
HNSC	TCGA-CV-6939-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039220	49039220	Frame_Shift_Del	A	-	p.T766fs
HNSC	TCGA-CN-6011-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578234	7578235	Frame_Shift_Ins	-	T	p.F205fs
HNSC	TCGA-HD-7753-01	VPS13D	ENST00000356315.4,ENST00000460333.1,ENST00000011700.6,ENST00000358136.3	chr1	12409220:12409431:12414030:12414278:12415955:12416147,	12414031	12414278	12414089	12414090	Frame_Shift_Del	TC	-	p.S3164fs
HNSC	TCGA-HD-7753-01	CD28	ENST00000324106.8	chr2	204571246:204571340:204591355:204591712:204594370:204594495,204571415:204571471:204591355:204591712:204594370:204594495,	204591356	204591712	204591669	204591669	Frame_Shift_Del	C	-	p.Y122fs
HNSC	TCGA-HD-7753-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32097384:32097486:32098469:32098740:32101210:32101345,	32098470	32098740	32098603	32098604	Frame_Shift_Ins	-	ACAA	p.A2694fs
HNSC	TCGA-CR-6473-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11994064:11994248:11997230:11997506:11998318:11998522,	11997231	11997506	11997456	11997456	Frame_Shift_Del	T	-	p.L875fs
HNSC	TCGA-DQ-5629-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542674	187542675	Frame_Shift_Ins	-	CC	p.Y1689fs
HNSC	TCGA-DQ-5629-01	MDFIC	ENST00000257724.3	chr7	114562615:114562691:114562981:114563182:114582329:114582452,	114562982	114563182	114563068	114563068	Frame_Shift_Del	G	-	p.A103fs
HNSC	TCGA-CV-6941-01	COPS4	ENST00000509093.1,ENST00000503682.1,ENST00000506443.1,ENST00000511653.1,ENST00000507376.1,ENST00000264389.2	chr4	83966778:83966858:83970318:83970470:83971033:83971112,	83970319	83970470	83970432	83970433	Frame_Shift_Ins	-	A	p.K90fs
HNSC	TCGA-CV-6941-01	SYT15	ENST00000374323.4	chr10	46967425:46967721:46968580:46968723:46970441:46970484,	46968581	46968723	46968665	46968665	Frame_Shift_Del	G	-	p.L144fs
HNSC	TCGA-CV-7432-01	PKD1	ENST00000472659.1,ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2143670:2143739:2143811:2144014:2144092:2144147,	2143812	2144014	2143887	2143888	Frame_Shift_Ins	-	G	p.R3582fs
HNSC	TCGA-CV-7432-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
HNSC	TCGA-BA-7269-01	ATP8B2	ENST00000341822.2,ENST00000368487.3,ENST00000426445.1,ENST00000368489.3	chr1	154302871:154302930:154303290:154303404:154303523:154303622,	154303291	154303404	154303375	154303378	Frame_Shift_Del	ACTT	-	p.TY92fs
HNSC	TCGA-BA-7269-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560503	32560516	Frame_Shift_Del	AGAGAAGTTCAGGC	-	p.REVQA210fs
HNSC	TCGA-BA-7269-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578180	7578181	Frame_Shift_Ins	-	T	p.R223fs
HNSC	TCGA-D6-6517-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261022	151261023	Frame_Shift_Ins	-	T	p.D712fs
HNSC	TCGA-D6-6517-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41084301:41084390:41088505:41088662:41088819:41089032,	41088506	41088662	41088557	41088563	Frame_Shift_Del	CACAATC	-	p.DTI2371fs
HNSC	TCGA-H7-A6C4-01	FAT2	ENST00000261800.5	chr5	150889581:150889735:150891725:150892167:150897180:150897326,	150891726	150892167	150891893	150891894	Frame_Shift_Ins	-	GG	p.G3913fs
HNSC	TCGA-H7-A6C4-01	FAT2	ENST00000520200.1	chr5	150889581:150889735:150891725:150891909:150897180:150897326,	150891726	150891909	150891893	150891894	Frame_Shift_Ins	-	GG	p.G3913fs
HNSC	TCGA-CN-A640-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336954	Frame_Shift_Del	A	-	p.L123fs
HNSC	TCGA-CN-A640-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971180	21971180	Frame_Shift_Del	C	-	p.G75fs
HNSC	TCGA-CN-A640-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971180	21971180	Frame_Shift_Del	C	-	p.G75fs
HNSC	TCGA-BA-6868-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911958	29911959	Frame_Shift_Ins	-	GC	p.L227fs
HNSC	TCGA-BA-6868-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
HNSC	TCGA-CR-6471-01	CAMKK2	ENST00000404169.3,ENST00000402834.4,ENST00000347034.2,ENST00000324774.5	chr12	121675572:121678345:121682375:121682418:121682942:121683043,121678404:121678672:121682375:121682418:121682942:121683043,	121682376	121682418	121682412	121682412	Frame_Shift_Del	T	-	p.K520fs
HNSC	TCGA-MT-A67A-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540557	187540557	Frame_Shift_Del	A	-	p.Y2395fs
HNSC	TCGA-MT-A67A-01	SPPL2A	ENST00000558934.1,ENST00000261854.5	chr15	51012136:51012297:51014320:51014398:51017417:51017520,	51014321	51014398	51014390	51014390	Frame_Shift_Del	T	-	p.I420fs
HNSC	TCGA-MT-A67A-01	VEZF1	ENST00000581208.1,ENST00000584396.1	chr17	56057963:56058147:56059233:56059297:56060059:56060195,	56059234	56059297	56059289	56059290	Frame_Shift_Ins	-	GGTCA	p.L237fs
HNSC	TCGA-CN-6019-01	HMGXB4	ENST00000444518.2,ENST00000418170.1,ENST00000216106.5	chr22	35684230:35684400:35688984:35689107:35689599:35689762,	35688985	35689107	35689036	35689037	Frame_Shift_Del	TG	-	p.C564fs
HNSC	TCGA-CV-6959-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579390	7579393	Frame_Shift_Del	GGAA	-	p.PS98fs
HNSC	TCGA-D6-A74Q-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637659	176637659	Frame_Shift_Del	A	-	p.P753fs
HNSC	TCGA-D6-A74Q-01	MMP26	ENST00000300762.1,ENST00000380390.1	chr11	5009499:5009540:5010877:5011098:5011827:5011976,	5010878	5011098	5010886	5010886	Frame_Shift_Del	C	-	p.F36fs
HNSC	TCGA-D6-A74Q-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451373	55451373	Frame_Shift_Del	C	-	p.D272fs
HNSC	TCGA-H7-8501-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100773701:100773935:100775155:100775350:100776975:100777174,	100775156	100775350	100775249	100775252	Frame_Shift_Del	CTCC	-	p.TP200fs
HNSC	TCGA-D6-A6EM-01	ETV1	ENST00000399357.3,ENST00000443608.1,ENST00000403527.1	chr7	13978820:13978871:14017051:14017105:14026262:14026310,13978820:13978871:14017051:14017105:14025740:14025929,	14017052	14017105	14017092	14017092	Frame_Shift_Del	G	-	p.D65fs
HNSC	TCGA-D6-A6EN-01	STAB1	ENST00000321725.6,ENST00000481626.1	chr3	52554855:52555021:52555376:52555526:52555611:52555716,	52555377	52555526	52555493	52555494	Frame_Shift_Del	TG	-	p.C2009fs
HNSC	TCGA-D6-A6EN-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971199	21971200	Frame_Shift_Ins	-	AT	p.W68fs
HNSC	TCGA-D6-A6EN-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971199	21971200	Frame_Shift_Ins	-	AT	p.W68fs
HNSC	TCGA-D6-A6EK-01	CARF	ENST00000320443.8,ENST00000545262.1,ENST00000402905.3,ENST00000545253.1,ENST00000428585.1,ENST00000438828.2,ENST00000414439.1	chr2	203846277:203846408:203846794:203847164:203848228:203848365,	203846795	203847164	203847093	203847106	Frame_Shift_Del	CTGTTCATCGGATT	-	p.TVHRI663fs
HNSC	TCGA-D6-A6EK-01	NCAPD2	ENST00000545962.1,ENST00000539885.1,ENST00000315579.5,ENST00000539084.1	chr12	6638682:6638759:6638940:6639124:6639856:6639896,	6638941	6639124	6639104	6639104	Frame_Shift_Del	G	-	p.G1273fs
HNSC	TCGA-D6-A6EK-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41069761:41069935:41073820:41073962:41075151:41075905,	41073821	41073962	41073879	41073879	Frame_Shift_Del	C	-	p.L1751fs
HNSC	TCGA-CN-6989-01	SMC4	ENST00000344722.5,ENST00000462787.1,ENST00000360111.2,ENST00000357388.3,ENST00000462668.1,ENST00000469762.1	chr3	160149430:160149613:160150070:160150303:160150813:160150997,	160150071	160150303	160150162	160150162	Frame_Shift_Del	A	-	p.Q1130fs
HNSC	TCGA-CV-6937-01	ZMYND12	ENST00000461083.1	chr1	42902091:42902214:42905526:42905696:42921558:42921682,	42905527	42905696	42905661	42905664	Frame_Shift_Del	ATAG	-	p.LF153fs
HNSC	TCGA-CV-6937-01	TMEM168	ENST00000441474.1	chr7	112415230:112415373:112423752:112423838:112430214:112430445,	112423753	112423838	112423785	112423786	Frame_Shift_Ins	-	A	p.N366fs
HNSC	TCGA-CV-6937-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578232	7578232	Frame_Shift_Del	A	-	p.L206fs
HNSC	TCGA-CV-7423-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	443426:443516:446369:446606:449783:449927,	446370	446606	446516	446517	Frame_Shift_Ins	-	CA	p.*1842fs
HNSC	TCGA-CV-7423-01	LZTS3	ENST00000360342.3,ENST00000337576.5	chr20	3143282:3145798:3146142:3146274:3146412:3147006,	3146143	3146274	3146179	3146179	Frame_Shift_Del	G	-	p.A429fs
HNSC	TCGA-CV-6955-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924152	150924153	Frame_Shift_Ins	-	T	p.S2179fs
HNSC	TCGA-CV-6955-01	ARVCF	ENST00000263207.3,ENST00000344269.3	chr22	19957420:19958266:19958738:19958858:19959408:19959494,	19958739	19958858	19958829	19958829	Frame_Shift_Del	G	-	p.P937fs
HNSC	TCGA-CV-7254-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000521398.1,ENST00000522006.1	chr6	112510332:112510407:112512837:112513052:112522808:112522889,	112512838	112513052	112512959	112512959	Frame_Shift_Del	A	-	p.F199fs
HNSC	TCGA-CV-7254-01	RAD51C	ENST00000583539.1,ENST00000337432.4	chr17	56770023:56770149:56772291:56772550:56774053:56774106,	56772292	56772550	56772501	56772501	Frame_Shift_Del	A	-	p.K119fs
HNSC	TCGA-CR-7371-01	DNAH8	ENST00000327475.6,ENST00000359357.3,ENST00000449981.2	chr6	38834366:38834453:38834544:38834652:38835837:38835972,	38834545	38834652	38834618	38834618	Frame_Shift_Del	T	-	p.L2003fs
HNSC	TCGA-CR-7371-01	TLE1	ENST00000376499.3	chr9	84198597:84199220:84199362:84199439:84200419:84200570,	84199363	84199439	84199390	84199390	Frame_Shift_Del	C	-	p.R726fs
HNSC	TCGA-WA-A7GZ-01	COL6A6	ENST00000358511.6	chr3	130363834:130363846:130367912:130368406:130377519:130377616,	130367913	130368406	130368102	130368102	Frame_Shift_Del	G	-	p.R1810fs
HNSC	TCGA-WA-A7GZ-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174815058	174815068	Frame_Shift_Del	AGAAGATATTA	-	p.AEDIK174fs
HNSC	TCGA-CV-7568-01	RBM4B	ENST00000310046.4	chr11	66436441:66436762:66444138:66444562:66445234:66445295,	66444139	66444562	66444242	66444243	Frame_Shift_Del	CG	-	p.P103fs
HNSC	TCGA-CV-A463-01	TSGA10	ENST00000488960.1,ENST00000539964.1,ENST00000393482.3,ENST00000409564.2,ENST00000393483.3,ENST00000542655.1,ENST00000355053.4,ENST00000410001.1	chr2	99695121:99695276:99697744:99697860:99720429:99720581,	99697745	99697860	99697797	99697797	Frame_Shift_Del	T	-	p.K225fs
HNSC	TCGA-BA-6869-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372672	180372672	Frame_Shift_Del	C	-	p.E354fs
HNSC	TCGA-BA-6869-01	ADAMTS13	ENST00000371929.3,ENST00000371916.1,ENST00000495234.1,ENST00000536611.1,ENST00000355699.2,ENST00000356589.2	chr9	136298760:136298824:136301948:136302075:136302868:136303017,	136301949	136302075	136302011	136302011	Frame_Shift_Del	G	-	p.P457fs
HNSC	TCGA-BA-6869-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47819503:47819710:47821464:47821635:47822244:47822397,	47821465	47821635	47821563	47821563	Frame_Shift_Del	G	-	p.S1630fs
HNSC	TCGA-CV-7243-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93202792:93202932:93205054:93205210:93206755:93206869,	93205055	93205210	93205154	93205158	Frame_Shift_Del	CTTGT	-	p.DK699fs
HNSC	TCGA-D6-6823-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331609	85331609	Frame_Shift_Del	G	-	p.F65fs
HNSC	TCGA-CR-7374-01	ATXN3	ENST00000555381.1	chr14	92555073:92555161:92560089:92560175:92562436:92562478,92559595:92559662:92560089:92560175:92562436:92562478,92559595:92559662:92560089:92560175:92572872:92572906,	92560090	92560175	92560173	92560173	Frame_Shift_Del	A	-	p.V79fs
HNSC	TCGA-CR-7374-01	ATXN3	ENST00000556374.1	chr14	92559595:92559662:92560089:92560194:92562436:92562481,	92560090	92560194	92560173	92560173	Frame_Shift_Del	A	-	p.V79fs
HNSC	TCGA-F7-A623-01	NT5C3A	ENST00000242210.7,ENST00000405342.1,ENST00000396152.2,ENST00000381626.2,ENST00000610140.1,ENST00000409467.1,ENST00000409787.1,ENST00000456458.1	chr7	33057050:33057213:33059246:33059336:33060883:33060969,	33059247	33059336	33059332	33059333	Frame_Shift_Ins	-	A	p.*115fs
HNSC	TCGA-F7-A623-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579419	7579420	Frame_Shift_Ins	-	GG	p.L90fs
HNSC	TCGA-CV-6948-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875791	27875792	Frame_Shift_Ins	-	G	p.A946fs
HNSC	TCGA-CV-6948-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577032	7577033	Frame_Shift_Del	CC	-	p.G302fs
HNSC	TCGA-CV-6948-01	MARK4	ENST00000262891.4,ENST00000300843.4	chr19	45754644:45754897:45762246:45762447:45766370:45766424,	45762247	45762447	45762300	45762300	Frame_Shift_Del	C	-	p.S35fs
HNSC	TCGA-CN-4735-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203593	91203605	Frame_Shift_Del	TCCACAAAAAAAA	-	p.IFFVE41fs
HNSC	TCGA-T2-A6X0-01	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682418	108682419	Frame_Shift_Ins	-	T	p.K881fs
HNSC	TCGA-CN-6016-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57920022	57920022	Frame_Shift_Del	C	-	p.S424fs
HNSC	TCGA-BA-4074-01	ACSF2	ENST00000502667.1,ENST00000504392.1,ENST00000510410.1,ENST00000541920.1,ENST00000427954.2,ENST00000300441.4	chr17	48539896:48539946:48540516:48540612:48540755:48540913,	48540517	48540612	48540530	48540531	Frame_Shift_Ins	-	C	p.S269fs
HNSC	TCGA-BA-4077-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.V137fs
HNSC	TCGA-BA-4077-01	NRIP3	ENST00000525100.1	chr11	9009094:9009177:9009664:9009808:9025308:9025548,	9009665	9009808	9009738	9009744	Frame_Shift_Del	TTCGTCT	-	p.K87fs
HNSC	TCGA-BA-4077-01	NRIP3	ENST00000531090.1	chr11	9009094:9009177:9009664:9009829:9025308:9025548,	9009665	9009829	9009738	9009744	Frame_Shift_Del	TTCGTCT	-	p.K87fs
HNSC	TCGA-BA-4077-01	ARHGAP15	ENST00000549436.1,ENST00000295095.6	chr2	144313976:144314054:144381701:144381836:144460987:144461093,	144381702	144381836	144381721	144381727	Frame_Shift_Del	CGACAGC	-	p.D341fs
HNSC	TCGA-BA-4077-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107492152	107492152	Frame_Shift_Del	G	-	p.K528fs
HNSC	TCGA-BA-4078-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45216104:45216257:45219218:45219391:45219594:45219747,	45219219	45219391	45219355	45219355	Frame_Shift_Del	C	-	p.G472fs
HNSC	TCGA-BA-4078-01	CDC27	ENST00000527547.1	chr17	45216104:45216257:45219218:45219388:45219594:45219747,	45219219	45219388	45219355	45219355	Frame_Shift_Del	C	-	p.G472fs
HNSC	TCGA-BA-4078-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33656432:33656558:33657014:33657187:33657810:33657975,	33657015	33657187	33657174	33657175	Frame_Shift_Ins	-	G	p.L2285fs
HNSC	TCGA-BA-5149-01	NOTCH1	ENST00000277541.6	chr9	139410432:139410546:139411723:139411837:139412203:139412389,	139411724	139411837	139411734	139411740	Frame_Shift_Del	CTCGCAC	-	p.Q513fs
HNSC	TCGA-BA-5151-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645241	67645242	Frame_Shift_Ins	-	G	p.V169fs
HNSC	TCGA-BA-5555-01	CAPZB	ENST00000433834.1,ENST00000401084.2,ENST00000375144.1	chr1	19666045:19666111:19670851:19670928:19671680:19671746,	19670852	19670928	19670883	19670884	Frame_Shift_Ins	-	A	p.F262fs
HNSC	TCGA-BA-5555-01	UHRF1BP1L	ENST00000279907.7,ENST00000356828.3	chr12	100497712:100497729:100502163:100502326:100536369:100536602,	100502164	100502326	100502306	100502319	Frame_Shift_Del	GGAGATAAATTTTT	-	p.K18fs
HNSC	TCGA-BA-5559-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39831282	39831285	Frame_Shift_Del	GTTT	-	p.K758fs
HNSC	TCGA-BA-5559-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39831282	39831285	Frame_Shift_Del	GTTT	-	p.K758fs
HNSC	TCGA-BA-6868-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911958	29911959	Frame_Shift_Ins	-	GC	p.C227fs
HNSC	TCGA-BA-6869-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372672	180372672	Frame_Shift_Del	C	-	p.E270fs
HNSC	TCGA-BA-6870-01	PAXIP1	ENST00000473219.1,ENST00000464717.1,ENST00000404141.1,ENST00000397192.1,ENST00000457196.1	chr7	154738074:154738135:154738221:154738297:154738388:154738523,	154738222	154738297	154738224	154738225	Frame_Shift_Ins	-	T	p.I1044fs
HNSC	TCGA-BA-6872-01	PLCG2	ENST00000359376.3	chr16	81954802:81954874:81957089:81957199:81960686:81960783,	81957090	81957199	81957192	81957192	Frame_Shift_Del	G	-	p.G804fs
HNSC	TCGA-BA-6873-01	MAST2	ENST00000372009.2,ENST00000372008.2,ENST00000361297.2	chr1	46493402:46493535:46494439:46494605:46495137:46495239,	46494440	46494605	46494559	46494559	Frame_Shift_Del	T	-	p.P724fs
HNSC	TCGA-BA-6873-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418601	122418602	Frame_Shift_Ins	-	A	p.V400fs
HNSC	TCGA-BA-7269-01	ATP8B2	ENST00000341822.2,ENST00000368487.3,ENST00000426445.1,ENST00000368489.3	chr1	154302871:154302930:154303290:154303404:154303523:154303622,	154303291	154303404	154303375	154303378	Frame_Shift_Del	ACTT	-	p.T78fs
HNSC	TCGA-BA-7269-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560503	32560516	Frame_Shift_Del	AGAGAAGTTCAGGC	-	p.R210fs
HNSC	TCGA-BA-7269-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578180	7578181	Frame_Shift_Ins	-	T	p.P223fs
HNSC	TCGA-CN-4723-01	FUS	ENST00000380244.3	chr16	31193718:31193743:31193833:31193985:31195178:31195323,31193718:31193743:31193833:31193985:31195181:31195323,	31193834	31193985	31193962	31193962	Frame_Shift_Del	C	-	p.S56fs
HNSC	TCGA-CN-4725-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73718322	73718322	Frame_Shift_Del	T	-	p.M3080fs
HNSC	TCGA-CN-4727-01	UPF3B	ENST00000345865.2,ENST00000276201.2	chrX	118977153:118977264:118979160:118979259:118985457:118985564,	118979161	118979259	118979179	118979180	Frame_Shift_Ins	-	T	p.K150fs
HNSC	TCGA-CN-4728-01	TOX4	ENST00000448790.2,ENST00000262709.3,ENST00000405508.1,ENST00000455393.1	chr14	21960666:21961416:21963387:21963551:21964703:21964913,	21963388	21963551	21963465	21963466	Frame_Shift_Ins	-	A	p.V573fs
HNSC	TCGA-CN-4728-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208539	55208540	Frame_Shift_Ins	-	T	p.K239fs
HNSC	TCGA-CN-4729-01	APOL4	ENST00000332987.1,ENST00000457630.2,ENST00000429038.2,ENST00000493203.2,ENST00000449084.1,ENST00000405511.1,ENST00000419360.1	chr22	36591383:36591483:36595375:36595422:36597745:36597842,	36595376	36595422	36595382	36595392	Frame_Shift_Del	ACTGTCCAGCC	-	p.V25fs
HNSC	TCGA-CN-4730-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637167	176637168	Frame_Shift_Del	TT	-	p.S589fs
HNSC	TCGA-CN-4731-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384892	124384893	Frame_Shift_Ins	-	T	p.K118fs
HNSC	TCGA-CN-4735-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203593	91203605	Frame_Shift_Del	TCCACAAAAAAAA	-	p.I41fs
HNSC	TCGA-CN-4739-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437687	122437688	Frame_Shift_Ins	-	A	p.K1563fs
HNSC	TCGA-CN-5355-01	NR4A2	ENST00000409572.1,ENST00000539077.1,ENST00000426264.1,ENST00000339562.4	chr2	157182255:157182512:157182661:157182840:157183229:157183432,	157182662	157182840	157182714	157182715	Frame_Shift_Ins	-	A	p.M496fs
HNSC	TCGA-CN-5355-01	NR4A2	ENST00000417764.1,ENST00000417972.1	chr2	157182255:157182512:157182661:157182719:157183229:157183432,	157182662	157182719	157182714	157182715	Frame_Shift_Ins	-	A	p.M496fs
HNSC	TCGA-CN-5356-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515266	183515267	Frame_Shift_Ins	-	A	p.E846fs
HNSC	TCGA-CN-5356-01	SH3RF3	ENST00000309415.6,ENST00000418513.1	chr2	110015045:110015399:110035994:110036098:110048956:110049127,	110035995	110036098	110036087	110036088	Frame_Shift_Ins	-	T	p.L464fs
HNSC	TCGA-CN-5356-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222301780:222301842:222307548:222307734:222308212:222308326,	222307549	222307734	222307601	222307602	Frame_Shift_Ins	-	A	p.M674fs
HNSC	TCGA-CN-5356-01	FAT1	ENST00000441802.2	chr4	187557178:187557389:187557738:187558068:187560875:187560937,	187557739	187558068	187558038	187558039	Frame_Shift_Ins	-	G	p.P1224fs
HNSC	TCGA-CN-5359-01	ZNF337	ENST00000481610.1,ENST00000376436.1,ENST00000252979.5	chr20	25657584:25657673:25666202:25666298:25666631:25666758,	25666203	25666298	25666234	25666234	Frame_Shift_Del	T	-	p.E73fs
HNSC	TCGA-CN-5360-01	CEP70	ENST00000464035.1,ENST00000481834.1,ENST00000470159.1,ENST00000264982.3,ENST00000468900.1,ENST00000462419.1,ENST00000542237.1,ENST00000478673.1,ENST00000474781.1,ENST00000484888.1	chr3	138289276:138289340:138289875:138289999:138290107:138290195,	138289876	138289999	138289944	138289944	Frame_Shift_Del	C	-	p.L72fs
HNSC	TCGA-CN-5360-01	PLXNB3	ENST00000361971.5,ENST00000538776.1,ENST00000538966.1	chrX	153033703:153033883:153034402:153034531:153034616:153034717,	153034403	153034531	153034499	153034499	Frame_Shift_Del	G	-	p.G455fs
HNSC	TCGA-CN-5363-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577092	7577092	Frame_Shift_Del	C	-	p.R282fs
HNSC	TCGA-CN-5364-01	FBXO11	ENST00000434234.1	chr2	48016460:48016579:48035132:48035386:48035467:48035566,	48035133	48035386	48035326	48035327	Frame_Shift_Ins	-	GG	p.P821fs
HNSC	TCGA-CN-5364-01	TBRG4	ENST00000478532.1	chr7	45145039:45145363:45148530:45148886:45151262:45151307,	45148531	45148886	45148633	45148634	Frame_Shift_Ins	-	A	p.I68fs
HNSC	TCGA-CN-5364-01	TBRG4	ENST00000361278.3	chr7	45145039:45145363:45148425:45148886:45151262:45151307,45145039:45145363:45148425:45148886:45151241:45151279,	45148426	45148886	45148633	45148634	Frame_Shift_Ins	-	A	p.I68fs
HNSC	TCGA-CN-5364-01	TBRG4	ENST00000494076.1	chr7	45145039:45145363:45148425:45148842:45151241:45151279,	45148426	45148842	45148633	45148634	Frame_Shift_Ins	-	A	p.I68fs
HNSC	TCGA-CN-5365-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30054177:30054253:30057193:30057328:30060978:30061053,	30057194	30057328	30057317	30057318	Frame_Shift_Ins	-	GT	p.S267fs
HNSC	TCGA-CN-5365-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514642	169514643	Frame_Shift_Del	AG	-	p.H221fs
HNSC	TCGA-CN-5366-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637575	52637576	Frame_Shift_Ins	-	TTTC	p.I914fs
HNSC	TCGA-CN-5367-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678468	73678468	Frame_Shift_Del	A	-	p.E1606fs
HNSC	TCGA-CN-5369-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
HNSC	TCGA-CN-5369-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156520052:156520143:156521496:156521660:156521765:156521887,	156521497	156521660	156521543	156521543	Frame_Shift_Del	G	-	p.P563fs
HNSC	TCGA-CN-5369-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93247438:93247535:93250956:93251064,	93247439	93247535	93247481	93247481	Frame_Shift_Del	A	-	p.A379fs
HNSC	TCGA-CN-5369-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269737	1269737	Frame_Shift_Del	C	-	p.T4404fs
HNSC	TCGA-CN-5369-01	EXPH5	ENST00000525344.1	chr11	108409750:108409913:108412378:108412539:108464144:108464231,	108412379	108412539	108412381	108412381	Frame_Shift_Del	T	-	p.N93fs
HNSC	TCGA-CN-5369-01	EIF5	ENST00000216554.3,ENST00000558506.1,ENST00000392715.2	chr14	103805508:103805670:103805975:103806140:103806763:103806898,	103805976	103806140	103805991	103805991	Frame_Shift_Del	A	-	p.K308fs
HNSC	TCGA-CN-5369-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944500	Frame_Shift_Del	G	-	p.P454fs
HNSC	TCGA-CN-5369-01	PARN	ENST00000437198.2,ENST00000341484.7,ENST00000539279.1,ENST00000420015.2	chr16	14530524:14530629:14540744:14540938:14576494:14576684,	14540745	14540938	14540819	14540819	Frame_Shift_Del	C	-	p.C597fs
HNSC	TCGA-CN-5369-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.G606fs
HNSC	TCGA-CN-5369-01	BCAM	ENST00000270233.6,ENST00000589651.1	chr19	45321997:45322139:45322312:45322449:45322602:45322747,	45322313	45322449	45322440	45322440	Frame_Shift_Del	G	-	p.L488fs
HNSC	TCGA-CN-5369-01	SOS1	ENST00000426016.1,ENST00000402219.2	chr2	39214613:39214732:39222263:39222528:39224062:39224179,39216410:39216455:39222263:39222528:39224062:39224179,	39222264	39222528	39222520	39222520	Frame_Shift_Del	T	-	p.K1030fs
HNSC	TCGA-CN-5369-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639588	47639588	Frame_Shift_Del	A	-	p.R227fs
HNSC	TCGA-CN-5369-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724116	230724116	Frame_Shift_Del	T	-	p.K91fs
HNSC	TCGA-CN-5369-01	P4HTM	ENST00000383729.4	chr3	49041530:49041693:49042293:49042479:49043209:49043300,	49042294	49042479	49042369	49042369	Frame_Shift_Del	G	-	p.E321fs
HNSC	TCGA-CN-5369-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187517815	187517815	Frame_Shift_Del	G	-	p.H4293fs
HNSC	TCGA-CN-5369-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924483	150924484	Frame_Shift_Ins	-	G	p.P2068fs
HNSC	TCGA-CN-5369-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000376237.4,ENST00000487245.1	chr6	31237742:31237862:31237986:31238262:31238849:31239108,	31237987	31238262	31238162	31238162	Frame_Shift_Del	G	-	p.T240fs
HNSC	TCGA-CN-5369-01	TMEM68	ENST00000334667.2,ENST00000522090.1,ENST00000434581.2	chr8	56663609:56663716:56668802:56668970:56676494:56676539,56663609:56663716:56668802:56668970:56675193:56675293,	56668803	56668970	56668944	56668944	Frame_Shift_Del	T	-	p.I118fs
HNSC	TCGA-CN-5370-01	IVNS1ABP	ENST00000367498.3	chr1	185270565:185270695:185274667:185274775:185275616:185275757,185270565:185270695:185274667:185274775:185276145:185276271,	185274668	185274775	185274695	185274696	Frame_Shift_Ins	-	CT	p.S246fs
HNSC	TCGA-CN-6010-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.K74fs
HNSC	TCGA-CN-6010-01	FABP6	ENST00000523955.1,ENST00000393980.4,ENST00000393982.1,ENST00000402432.3	chr5	159656552:159656631:159659104:159659280:159661826:159661916,	159659105	159659280	159659192	159659192	Frame_Shift_Del	A	-	p.Q52fs
HNSC	TCGA-CN-6011-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
HNSC	TCGA-CN-6011-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
HNSC	TCGA-CN-6011-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578234	7578235	Frame_Shift_Ins	-	T	p.Y205fs
HNSC	TCGA-CN-6012-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741775	37741775	Frame_Shift_Del	A	-	p.L703fs
HNSC	TCGA-CN-6013-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099187	56099187	Frame_Shift_Del	T	-	p.K25fs
HNSC	TCGA-CN-6017-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579441	7579453	Frame_Shift_Del	CGGTGTAGGAGCT	-	p.A78fs
HNSC	TCGA-CN-6018-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132173	51132173	Frame_Shift_Del	T	-	p.R87fs
HNSC	TCGA-CN-6020-01	SUN1	ENST00000471349.1,ENST00000456758.2,ENST00000493681.1,ENST00000413171.2,ENST00000340926.3	chr7	882842:882869:882977:883157:888054:888058,	882978	883157	883110	883110	Frame_Shift_Del	C	-	p.A204fs
HNSC	TCGA-CN-6021-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579494	7579495	Frame_Shift_Ins	-	G	p.P64fs
HNSC	TCGA-CN-6021-01	ATP13A4	ENST00000474776.1	chr3	193151648:193151706:193153436:193153533:193156811:193156854,	193153437	193153533	193153532	193153532	Frame_Shift_Del	C	-	p.E892fs
HNSC	TCGA-CN-6021-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278600	114278601	Frame_Shift_Ins	-	A	p.S2942fs
HNSC	TCGA-CN-6024-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7797444:7797583:7797732:7797926:7798234:7798468,	7797733	7797926	7797825	7797826	Frame_Shift_Ins	-	A	p.E390fs
HNSC	TCGA-CN-6988-01	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000473086.2,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42490267:42490381:42492087:42492291:42492469:42492529,	42492088	42492291	42492178	42492179	Frame_Shift_Ins	-	C	p.G89fs
HNSC	TCGA-CN-6992-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256552	19256556	Frame_Shift_Del	TATGT	-	p.L167fs
HNSC	TCGA-CN-6998-01	KCNT2	ENST00000610076.1	chr1	196309618:196309700:196311208:196311379:196342269:196342378,	196311209	196311379	196311261	196311262	Frame_Shift_Ins	-	A	p.F500fs
HNSC	TCGA-CN-6998-01	KCNT2	ENST00000294725.9,ENST00000367433.5,ENST00000451324.2,ENST00000498426.1	chr1	196309618:196309700:196311208:196311358:196342269:196342378,	196311209	196311358	196311261	196311262	Frame_Shift_Ins	-	A	p.F500fs
HNSC	TCGA-CQ-5323-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7635561:7635600:7635962:7636271:7637691:7637940,	7635963	7636271	7636068	7636069	Frame_Shift_Ins	-	A	p.N994fs
HNSC	TCGA-CQ-5323-01	KRT5	ENST00000552629.1,ENST00000252242.4,ENST00000549420.1	chr12	52911741:52911776:52911886:52911947:52912729:52912901,	52911887	52911947	52911893	52911894	Frame_Shift_Ins	-	A	p.L275fs
HNSC	TCGA-CQ-5331-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
HNSC	TCGA-CQ-5331-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
HNSC	TCGA-CQ-5331-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827881	48827882	Frame_Shift_Ins	-	A	p.D386fs
HNSC	TCGA-CQ-5334-01	THEM4	ENST00000368814.3	chr1	151860748:151860859:151861689:151861849:151867483:151867670,	151861690	151861849	151861698	151861699	Frame_Shift_Ins	-	C	p.G146fs
HNSC	TCGA-CQ-5334-01	RAN	ENST00000541630.1,ENST00000543796.1,ENST00000477395.1,ENST00000392369.2,ENST00000448750.3,ENST00000535090.1,ENST00000254675.3	chr12	131357547:131357673:131359090:131359278:131360156:131360184,	131359091	131359278	131359130	131359133	Frame_Shift_Del	TTAC	-	p.V96fs
HNSC	TCGA-CQ-5334-01	RAN	ENST00000536606.1	chr12	131357547:131357673:131359095:131359278:131360156:131360184,	131359096	131359278	131359130	131359133	Frame_Shift_Del	TTAC	-	p.V96fs
HNSC	TCGA-CQ-6218-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540720	187540742	Frame_Shift_Del	GCCAGTGCTGCTGTCTACATGAA	-	p.F2333fs
HNSC	TCGA-CQ-6218-01	AKAP7	ENST00000368123.4,ENST00000431975.2	chr6	131520600:131520713:131540800:131540948:131602669:131603083,	131540801	131540948	131540807	131540807	Frame_Shift_Del	A	-	p.K237fs
HNSC	TCGA-CQ-6223-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100775155:100775350:100776975:100777174:100778774:100778875,	100776976	100777174	100777046	100777047	Frame_Shift_Ins	-	A	p.S257fs
HNSC	TCGA-CQ-6225-01	DEDD2	ENST00000593561.1	chr19	42713851:42713992:42719284:42719404:42721783:42721821,42713851:42713992:42719284:42719404:42724225:42724275,	42719285	42719404	42719365	42719374	Frame_Shift_Del	GAAGAGCTGG	-	p.S120fs
HNSC	TCGA-CQ-6225-01	DEDD2	ENST00000600559.1	chr19	42713851:42713992:42719299:42719404:42721783:42721821,	42719300	42719404	42719365	42719374	Frame_Shift_Del	GAAGAGCTGG	-	p.S120fs
HNSC	TCGA-CQ-6225-01	ATP6V1C2	ENST00000272238.4,ENST00000381661.3	chr2	10904456:10904551:10908844:10908936:10911964:10912063,	10908845	10908936	10908907	10908908	Frame_Shift_Del	AA	-	p.T147fs
HNSC	TCGA-CQ-6228-01	TMPRSS3	ENST00000474596.1,ENST00000433957.2,ENST00000398405.1,ENST00000476848.1,ENST00000380399.1,ENST00000482761.1,ENST00000291532.3	chr21	43791999:43792888:43795824:43795977:43796649:43796792,	43795825	43795977	43795867	43795873	Frame_Shift_Del	GGTGTAC	-	p.V433fs
HNSC	TCGA-CQ-6229-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971048	21971058	Frame_Shift_Del	GCCGCGCCCCG	-	p.A100fs
HNSC	TCGA-CQ-6229-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971048	21971058	Frame_Shift_Del	GCCGCGCCCCG	-	p.A100fs
HNSC	TCGA-CR-5248-01	ABR	ENST00000544583.2	chr17	1003876:1003975:1028517:1028702:1090093:1090616,	1028518	1028702	1028559	1028559	Frame_Shift_Del	C	-	p.D69fs
HNSC	TCGA-CR-5248-01	SPRED3	ENST00000586301.1,ENST00000587013.1,ENST00000338502.4	chr19	38882851:38882928:38885282:38885426:38886119:38886788,	38885283	38885426	38885397	38885397	Frame_Shift_Del	C	-	p.P180fs
HNSC	TCGA-CR-5248-01	LEPROTL1	ENST00000321250.8,ENST00000518192.1	chr8	29959455:29959489:29961815:29962002:29994787:29995213,29959455:29959489:29961815:29962002:29963261:29963544,	29961816	29962002	29961841	29961841	Frame_Shift_Del	T	-	p.F40fs
HNSC	TCGA-CR-5250-01	ACOX3	ENST00000413009.2	chr4	8372634:8372721:8376704:8376879:8383218:8383334,	8376705	8376879	8376858	8376858	Frame_Shift_Del	C	-	p.A559fs
HNSC	TCGA-CR-6467-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232949	19232950	Frame_Shift_Ins	-	A	p.S467fs
HNSC	TCGA-CR-6467-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911160	29911179	Frame_Shift_Del	CCTGCGCTCTTGGACCGCGG	-	p.D153fs
HNSC	TCGA-CR-6472-01	CELSR2	ENST00000271332.3	chr1	109811202:109811386:109811501:109811630:109811731:109811912,	109811502	109811630	109811620	109811621	Frame_Shift_Del	TG	-	p.S2207fs
HNSC	TCGA-CR-6472-01	ARHGEF1	ENST00000347545.4,ENST00000594044.1,ENST00000337665.4,ENST00000600274.1,ENST00000599589.1,ENST00000595897.1,ENST00000594258.1,ENST00000354532.3,ENST00000378152.4,ENST00000599846.1	chr19	42406423:42406506:42406682:42406808:42406933:42407047,	42406683	42406808	42406794	42406803	Frame_Shift_Del	TGTGCCTTCG	-	p.C537fs
HNSC	TCGA-CR-6472-01	SLC4A4	ENST00000264485.5,ENST00000340595.3,ENST00000351898.6	chr4	72425809:72425971:72429509:72429606:72432720:72432790,	72429510	72429606	72429528	72429529	Frame_Shift_Ins	-	A	p.E1040fs
HNSC	TCGA-CR-6477-01	LZTS2	ENST00000370223.3,ENST00000370220.1	chr10	102762555:102762703:102763263:102763923:102765214:102765472,	102763264	102763923	102763471	102763475	Frame_Shift_Del	AGTGG	-	p.S206fs
HNSC	TCGA-CR-6477-01	PMPCB	ENST00000453466.1,ENST00000444457.1,ENST00000420236.2,ENST00000428154.1,ENST00000249269.4	chr7	102950761:102950922:102952089:102952175:102952254:102952343,	102952090	102952175	102952157	102952158	Frame_Shift_Ins	-	T	p.M408fs
HNSC	TCGA-CR-6484-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984449	123984449	Frame_Shift_Del	A	-	p.L543fs
HNSC	TCGA-CR-6491-01	TFAP2A	ENST00000478375.1,ENST00000482890.1,ENST00000466073.1,ENST00000379604.2,ENST00000379613.3	chr6	10407025:10407077:10410133:10410568:10415173:10415233,	10410134	10410568	10410525	10410526	Frame_Shift_Ins	-	G	p.Q30fs
HNSC	TCGA-CR-6493-01	SSB	ENST00000474273.1,ENST00000260956.4,ENST00000409333.1	chr2	170663480:170663581:170664991:170665063:170665369:170665412,	170664992	170665063	170665008	170665008	Frame_Shift_Del	A	-	p.K191fs
HNSC	TCGA-CR-7364-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232114:26232197:26232870:26232993:26233194:26233314,	26232871	26232993	26232884	26232885	Frame_Shift_Ins	-	C	p.G329fs
HNSC	TCGA-CR-7365-01	MTHFD1	ENST00000554677.1,ENST00000545908.1,ENST00000216605.8	chr14	64905813:64905890:64906843:64906984:64908102:64908171,	64906844	64906984	64906869	64906879	Frame_Shift_Del	GTGAAATTATG	-	p.S567fs
HNSC	TCGA-CR-7365-01	DDX43	ENST00000370336.4	chr6	74111641:74111713:74114412:74114494:74115401:74115558,	74114413	74114494	74114465	74114466	Frame_Shift_Ins	-	A	p.A207fs
HNSC	TCGA-CR-7367-01	TBC1D14	ENST00000409757.4,ENST00000410031.1,ENST00000448507.1,ENST00000446947.2,ENST00000451522.2	chr4	7016174:7016284:7026730:7026989:7032053:7032547,	7026731	7026989	7026838	7026848	Frame_Shift_Del	TCCTGAAGCTG	-	p.I622fs
HNSC	TCGA-CR-7367-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3,ENST00000497100.1	chrX	53239595:53239758:53239857:53240039:53240678:53240837,	53239858	53240039	53240037	53240038	Frame_Shift_Ins	-	A	p.E468fs
HNSC	TCGA-CR-7368-01	SLC7A5	ENST00000261622.4	chr16	87874655:87874761:87885329:87885455:87902490:87903094,	87885330	87885455	87885358	87885359	Frame_Shift_Ins	-	A	p.I212fs
HNSC	TCGA-CR-7368-01	RINT1	ENST00000474123.1,ENST00000257700.2,ENST00000497979.1	chr7	105190505:105190612:105190707:105190933:105192016:105192154,	105190708	105190933	105190824	105190834	Frame_Shift_Del	TGAAAGGGAGC	-	p.F408fs
HNSC	TCGA-CR-7369-01	CASZ1	ENST00000377022.3,ENST00000496432.2,ENST00000344008.5	chr1	10714475:10714648:10715705:10715870:10716702:10716793,	10715706	10715870	10715709	10715710	Frame_Shift_Ins	-	A	p.M554fs
HNSC	TCGA-CR-7370-01	CNST	ENST00000366512.3,ENST00000483271.1,ENST00000366513.4	chr1	246754904:246755243:246784730:246784936:246795195:246795226,	246784731	246784936	246784843	246784844	Frame_Shift_Ins	-	GC	p.E164fs
HNSC	TCGA-CR-7370-01	RAB22A	ENST00000244040.3	chr20	56928487:56928594:56929211:56929321:56934661:56942563,	56929212	56929321	56929251	56929254	Frame_Shift_Del	TATT	-	p.S139fs
HNSC	TCGA-CR-7370-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000397991.4,ENST00000317104.7,ENST00000489671.1,ENST00000467072.1,ENST00000479040.1,ENST00000486111.1,ENST00000495310.1,ENST00000310282.6,ENST00000467667.1,ENST00000477292.1	chr3	141678641:141678682:141682653:141682805:141688914:141688983,	141682654	141682805	141682777	141682777	Frame_Shift_Del	C	-	p.R254fs
HNSC	TCGA-CR-7372-01	MTO1	ENST00000370300.4,ENST00000498286.1,ENST00000415228.1,ENST00000370308.4,ENST00000462039.1	chr6	74171517:74171794:74175931:74176131:74176211:74176329,	74175932	74176131	74176036	74176037	Frame_Shift_Ins	-	GT	p.G108fs
HNSC	TCGA-CR-7380-01	PIBF1	ENST00000326291.6	chr13	73428194:73428293:73467921:73468087:73482668:73482819,	73467922	73468087	73468075	73468076	Frame_Shift_Ins	-	A	p.Q492fs
HNSC	TCGA-CR-7380-01	SDC1	ENST00000381150.1,ENST00000403076.1	chr2	20403912:20404052:20405103:20405185:20424562:20424847,	20405104	20405185	20405159	20405160	Frame_Shift_Ins	-	G	p.P31fs
HNSC	TCGA-CR-7388-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2,ENST00000425511.1	chr13	75923305:75923438:75930282:75930387:75933904:75933994,	75930283	75930387	75930347	75930348	Frame_Shift_Ins	-	C	p.E404fs
HNSC	TCGA-CR-7388-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9258619	9258619	Frame_Shift_Del	G	-	p.R1785fs
HNSC	TCGA-CR-7389-01	TIGIT	ENST00000481065.1,ENST00000383671.3,ENST00000486257.1	chr3	114012874:114012969:114014391:114014721:114018443:114018550,	114014392	114014721	114014456	114014456	Frame_Shift_Del	C	-	p.I42fs
HNSC	TCGA-CR-7390-01	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3,ENST00000368428.1	chr1	154961252:154961325:154962035:154962183:154962634:154962733,	154962036	154962183	154962050	154962050	Frame_Shift_Del	A	-	p.K378fs
HNSC	TCGA-CR-7393-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579566	7579566	Frame_Shift_Del	C	-	p.D41fs
HNSC	TCGA-CR-7394-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.M1388fs
HNSC	TCGA-CR-7395-01	ITGB3BP	ENST00000460251.1	chr1	63920575:63920639:63944434:63944504:63955753:63955885,63923547:63924044:63944434:63944504:63955753:63955885,	63944435	63944504	63944501	63944502	Frame_Shift_Del	TT	-	p.K63fs
HNSC	TCGA-CR-7395-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131442	202131443	Frame_Shift_Ins	-	C	p.Y78fs
HNSC	TCGA-CR-7395-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131442	202131443	Frame_Shift_Ins	-	C	p.Y78fs
HNSC	TCGA-CR-7398-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675268	176675269	Frame_Shift_Ins	-	A	p.S1528fs
HNSC	TCGA-CR-7402-01	CYP4F22	ENST00000601005.2,ENST00000269703.3	chr19	15648682:15648804:15651260:15651528:15654781:15654848,	15651261	15651528	15651434	15651434	Frame_Shift_Del	G	-	p.R282fs
HNSC	TCGA-CR-7402-01	ZXDC	ENST00000389709.3	chr3	126160607:126160789:126178495:126178580:126180377:126181063,	126178496	126178580	126178522	126178522	Frame_Shift_Del	T	-	p.K729fs
HNSC	TCGA-CR-7402-01	ESCO2	ENST00000518262.1,ENST00000305188.8	chr8	27637715:27637784:27641516:27641574:27645401:27645519,	27641517	27641574	27641568	27641569	Frame_Shift_Ins	-	A	p.S336fs
HNSC	TCGA-CV-5430-01	PDE4DIP	ENST00000528552.1,ENST00000369348.3,ENST00000531369.1,ENST00000530078.1,ENST00000532803.1,ENST00000313382.9,ENST00000369359.4,ENST00000533163.1,ENST00000527063.1,ENST00000530740.1	chr1	144955215:144955292:144994590:144994701:145015859:145015938,	144994591	144994701	144994620	144994623	Frame_Shift_Del	CATA	-	p.Y37fs
HNSC	TCGA-CV-5430-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579410	7579420	Frame_Shift_Del	GGGGCCAGGAG	-	p.P89fs
HNSC	TCGA-CV-5430-01	ERLIN2	ENST00000519872.1,ENST00000523887.1,ENST00000276461.5	chr8	37594144:37594196:37595425:37595547:37597882:37597964,	37595426	37595547	37595472	37595473	Frame_Shift_Ins	-	T	p.A11fs
HNSC	TCGA-CV-5431-01	LINS1	ENST00000559149.1,ENST00000561073.1,ENST00000314742.8,ENST00000561308.1	chr15	101120524:101120557:101120648:101121150:101142325:101142355,	101120649	101121150	101120736	101120737	Frame_Shift_Ins	-	AATA	p.L104fs
HNSC	TCGA-CV-5432-01	PLSCR1	ENST00000462666.1,ENST00000487389.1,ENST00000472349.1,ENST00000342435.4,ENST00000494568.1	chr3	146243391:146243434:146246400:146246618:146251256:146251329,	146246401	146246618	146246596	146246597	Frame_Shift_Ins	-	T	p.Y39fs
HNSC	TCGA-CV-5434-01	ADIPOR1	ENST00000367254.3	chr1	202917431:202917548:202920057:202920292:202927312:202927413,	202920058	202920292	202920154	202920155	Frame_Shift_Ins	-	G	p.A15fs
HNSC	TCGA-CV-5434-01	PLSCR1	ENST00000462666.1,ENST00000487389.1,ENST00000472349.1,ENST00000342435.4,ENST00000494568.1	chr3	146243391:146243434:146246400:146246618:146251256:146251329,	146246401	146246618	146246596	146246597	Frame_Shift_Ins	-	T	p.Y39fs
HNSC	TCGA-CV-5435-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743569	130743570	Frame_Shift_Ins	-	G	p.P194fs
HNSC	TCGA-CV-5436-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41813935:41814078:41814295:41814448:41814962:41815158,	41814296	41814448	41814429	41814430	Frame_Shift_Ins	-	C	p.A921fs
HNSC	TCGA-CV-5436-01	FPGS	ENST00000460181.1,ENST00000393706.2,ENST00000489522.1,ENST00000488506.1,ENST00000488307.1,ENST00000373247.2,ENST00000373225.3,ENST00000467826.1	chr9	130570542:130570590:130570836:130570984:130571078:130571161,	130570837	130570984	130570884	130570885	Frame_Shift_Ins	-	C	p.G290fs
HNSC	TCGA-CV-5439-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576896	7576897	Frame_Shift_Ins	-	G	p.Q317fs
HNSC	TCGA-CV-5440-01	ZNF365	ENST00000395251.1,ENST00000410046.3,ENST00000373784.2	chr10	64416155:64416246:64425888:64425962:64429966:64430134,	64425889	64425962	64425946	64425946	Frame_Shift_Del	C	-	p.L180fs
HNSC	TCGA-CV-5441-01	PAK2	ENST00000426668.1,ENST00000327134.3	chr3	196539609:196539722:196541321:196541439:196544927:196545027,	196541322	196541439	196541368	196541368	Frame_Shift_Del	G	-	p.G328fs
HNSC	TCGA-CV-5441-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157470017	157470018	Frame_Shift_Del	TG	-	p.T866fs
HNSC	TCGA-CV-5442-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2,ENST00000433205.1	chr6	109769077:109769166:109769405:109769596:109769934:109770073,	109769406	109769596	109769587	109769587	Frame_Shift_Del	T	-	p.S558fs
HNSC	TCGA-CV-5970-01	HYDIN	ENST00000393567.2	chr16	70942555:70942764:70952113:70952332:70954493:70955120,	70952114	70952332	70952161	70952162	Frame_Shift_Ins	-	T	p.K2651fs
HNSC	TCGA-CV-5978-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000558836.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000393824.3	chr7	101740643:101740781:101747615:101747739:101754977:101755006,	101747616	101747739	101747722	101747723	Frame_Shift_Ins	-	T	p.D171fs
HNSC	TCGA-CV-6003-01	RBM5	ENST00000395174.2,ENST00000347869.3,ENST00000474818.1,ENST00000496179.1	chr3	50142981:50143142:50144199:50144297:50144914:50145002,	50144200	50144297	50144226	50144227	Frame_Shift_Del	AC	-	p.L294fs
HNSC	TCGA-CV-6003-01	TP63	ENST00000418709.2,ENST00000320472.5,ENST00000440651.2,ENST00000392460.3,ENST00000264731.3	chr3	189507589:189507631:189526060:189526315:189582020:189582057,189456430:189456563:189526060:189526315:189582020:189582057,	189526061	189526315	189526228	189526229	Frame_Shift_Ins	-	A	p.A164fs
HNSC	TCGA-CV-6441-01	RARG	ENST00000425354.2,ENST00000548317.1,ENST00000338561.5,ENST00000327550.3,ENST00000543726.1,ENST00000550265.1,ENST00000394426.1,ENST00000543762.1	chr12	53607877:53608019:53608229:53608390:53609076:53609136,	53608230	53608390	53608326	53608338	Frame_Shift_Del	ATAGCTGTCAGGT	-	p.S176fs
HNSC	TCGA-CV-6441-01	TESC	ENST00000335209.7,ENST00000541210.1,ENST00000392545.4,ENST00000470612.1	chr12	117476761:117477015:117479751:117479799:117484363:117484471,	117479752	117479799	117479755	117479755	Frame_Shift_Del	C	-	p.L241fs
HNSC	TCGA-CV-6936-01	NSUN4	ENST00000471871.1,ENST00000474844.1,ENST00000537428.1,ENST00000536062.1,ENST00000495427.1,ENST00000498008.1,ENST00000307089.3	chr1	46818539:46818700:46826375:46826500:46827241:46827666,	46826376	46826500	46826430	46826430	Frame_Shift_Del	A	-	p.N270fs
HNSC	TCGA-CV-6936-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	21581734:21581928:21592309:21592486:21594730:21594955,	21592310	21592486	21592401	21592402	Frame_Shift_Ins	-	A	p.T691fs
HNSC	TCGA-CV-6937-01	ZMYND12	ENST00000461083.1	chr1	42902091:42902214:42905526:42905696:42921558:42921682,	42905527	42905696	42905661	42905664	Frame_Shift_Del	ATAG	-	p.L153fs
HNSC	TCGA-CV-6937-01	TMEM168	ENST00000441474.1	chr7	112415230:112415373:112423752:112423838:112430214:112430445,	112423753	112423838	112423785	112423786	Frame_Shift_Ins	-	A	p.L365fs
HNSC	TCGA-CV-6938-01	NOC3L	ENST00000371361.3,ENST00000371350.1	chr10	96116930:96117088:96117839:96117972:96121421:96121629,	96117840	96117972	96117971	96117972	Frame_Shift_Ins	-	T	p.G73fs
HNSC	TCGA-CV-6939-01	TBCK	ENST00000467183.2,ENST00000394708.2,ENST00000432496.2,ENST00000514689.1,ENST00000510927.1,ENST00000394706.3,ENST00000515705.1,ENST00000361687.4,ENST00000273980.5	chr4	107037475:107037535:107092251:107092427:107114765:107114927,	107092252	107092427	107092375	107092382	Frame_Shift_Del	AGTCCAAC	-	p.C702fs
HNSC	TCGA-CV-6941-01	SYT15	ENST00000374323.4	chr10	46967425:46967721:46968580:46968723:46970441:46970484,	46968581	46968723	46968665	46968665	Frame_Shift_Del	G	-	p.L91fs
HNSC	TCGA-CV-6941-01	COPS4	ENST00000509093.1,ENST00000503682.1,ENST00000506443.1,ENST00000511653.1,ENST00000507376.1,ENST00000264389.2	chr4	83966778:83966858:83970318:83970470:83971033:83971112,	83970319	83970470	83970432	83970433	Frame_Shift_Ins	-	A	p.E90fs
HNSC	TCGA-CV-6942-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541705	187541721	Frame_Shift_Del	AAAGGCTCATTGATTGG	-	p.P2007fs
HNSC	TCGA-CV-6945-01	C17orf53	ENST00000585683.1	chr17	42228331:42228412:42230004:42230145:42231920:42232032,42228331:42228412:42230004:42230145:42231923:42232032,	42230005	42230145	42230139	42230145	Frame_Shift_Del	GCGCAAG	-	p.L481fs
HNSC	TCGA-CV-6945-01	THBS2	ENST00000366787.3	chr6	169646291:169646376:169648511:169649068:169650827:169650901,	169648512	169649068	169648982	169648983	Frame_Shift_Del	CG	-	p.R46fs
HNSC	TCGA-CV-6948-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875791	27875792	Frame_Shift_Ins	-	G	p.P945fs
HNSC	TCGA-CV-6951-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970919	21970919	Frame_Shift_Del	C	-	p.A147fs
HNSC	TCGA-CV-6952-01	SLC9A6	ENST00000370698.3,ENST00000370695.4,ENST00000370701.1	chrX	135095507:135095596:135098803:135098917:135104744:135104856,	135098804	135098917	135098865	135098865	Frame_Shift_Del	T	-	p.L401fs
HNSC	TCGA-CV-6954-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52880880:52881048:52883127:52883299:52884024:52884157,	52883128	52883299	52883129	52883129	Frame_Shift_Del	T	-	p.K221fs
HNSC	TCGA-CV-6955-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924152	150924153	Frame_Shift_Ins	-	T	p.R2179fs
HNSC	TCGA-CV-6956-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579356	7579359	Frame_Shift_Del	GACG	-	p.R110fs
HNSC	TCGA-CV-6959-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579390	7579393	Frame_Shift_Del	GGAA	-	p.P98fs
HNSC	TCGA-CV-6960-01	CD27	ENST00000541233.1,ENST00000266557.3	chr12	6554589:6554721:6559338:6559518:6559706:6559796,	6559339	6559518	6559460	6559466	Frame_Shift_Del	TCGGTCG	-	p.A130fs
HNSC	TCGA-CV-6960-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51159933	51159933	Frame_Shift_Del	G	-	p.L1240fs
HNSC	TCGA-CV-6962-01	ABHD3	ENST00000580981.1	chr18	19237064:19237113:19239130:19239304:19243638:19244191,19237064:19237113:19239130:19239304:19244078:19244191,19237064:19237113:19239130:19239304:19282276:19282459,	19239131	19239304	19239184	19239191	Frame_Shift_Del	GTTCAGTG	-	p.P261fs
HNSC	TCGA-CV-7090-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171600	36171601	Frame_Shift_Ins	-	A	p.S295fs
HNSC	TCGA-CV-7095-01	PMS1	ENST00000441310.2,ENST00000421722.1,ENST00000409985.1,ENST00000450931.1,ENST00000424766.1,ENST00000374826.4,ENST00000409823.3,ENST00000447232.2,ENST00000424059.1	chr2	190656535:190656667:190660494:190660677:190670377:190670480,	190660495	190660677	190660652	190660653	Frame_Shift_Ins	-	G	p.L97fs
HNSC	TCGA-CV-7097-01	TSPAN14	ENST00000372158.1,ENST00000372156.1	chr10	82214110:82214127:82248972:82249070:82264483:82264533,82214110:82214127:82248972:82249070:82266983:82267052,82228337:82228443:82248972:82249070:82264483:82264534,	82248973	82249070	82249069	82249069	Frame_Shift_Del	G	-	p.W27fs
HNSC	TCGA-CV-7097-01	NAPA	ENST00000597118.1,ENST00000595227.1,ENST00000593905.1,ENST00000263354.3,ENST00000593761.1,ENST00000598615.1,ENST00000594001.1,ENST00000601208.1	chr19	47996217:47996302:47996375:47996431:47996672:47996750,	47996376	47996431	47996389	47996390	Frame_Shift_Ins	-	G	p.G154fs
HNSC	TCGA-CV-7097-01	DDX27	ENST00000471144.1,ENST00000371764.4,ENST00000484427.1	chr20	47852869:47853047:47855485:47855592:47855772:47855875,	47855486	47855592	47855521	47855530	Frame_Shift_Del	ATGGAGAAAG	-	p.M606fs
HNSC	TCGA-CV-7097-01	ABCF1	ENST00000475993.1,ENST00000376545.3,ENST00000326195.8	chr6	30551581:30551667:30551968:30552108:30552194:30552343,	30551969	30552108	30551996	30551997	Frame_Shift_Ins	-	C	p.V377fs
HNSC	TCGA-CV-7100-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46099160:46099319:46099767:46099908:46105881:46106075,	46099768	46099908	46099783	46099784	Frame_Shift_Ins	-	A	p.L290fs
HNSC	TCGA-CV-7101-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71727303	71727306	Frame_Shift_Del	CCAG	-	p.L415fs
HNSC	TCGA-CV-7101-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475056	32475056	Frame_Shift_Del	T	-	p.K626fs
HNSC	TCGA-CV-7101-01	SLC16A10	ENST00000368851.5	chr6	111493897:111494042:111498414:111498868:111527794:111527938,	111498415	111498868	111498539	111498558	Frame_Shift_Del	ATTGTCACTGCTGGCAGCAG	-	p.I205fs
HNSC	TCGA-CV-7102-01	SYDE2	ENST00000234668.6	chr1	85647780:85648883:85655739:85656435:85665934:85666196,	85655740	85656435	85656306	85656307	Frame_Shift_Ins	-	A	p.Y292fs
HNSC	TCGA-CV-7103-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212517	185212518	Frame_Shift_Ins	-	A	p.F156fs
HNSC	TCGA-CV-7104-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237578	33237578	Frame_Shift_Del	C	-	p.A874fs
HNSC	TCGA-CV-7177-01	STAC3	ENST00000557176.1	chr12	57638927:57638994:57640586:57640684:57641908:57641981,57638698:57638748:57640586:57640684:57641908:57641981,	57640587	57640684	57640658	57640659	Frame_Shift_Del	AC	-	p.V177fs
HNSC	TCGA-CV-7178-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971132	21971133	Frame_Shift_Ins	-	G	p.P75fs
HNSC	TCGA-CV-7178-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971132	21971133	Frame_Shift_Ins	-	G	p.P75fs
HNSC	TCGA-CV-7180-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3149731:3149934:3156019:3156146:3158798:3158926,	3156020	3156146	3156043	3156043	Frame_Shift_Del	C	-	p.N1176fs
HNSC	TCGA-CV-7183-01	WDTC1	ENST00000447062.2,ENST00000361771.3,ENST00000319394.3	chr1	27609828:27609940:27614164:27614352:27618705:27618888,	27614165	27614352	27614251	27614252	Frame_Shift_Ins	-	AT	p.T126fs
HNSC	TCGA-CV-7236-01	UBE2J2	ENST00000473215.1,ENST00000400929.2,ENST00000435198.1,ENST00000509720.1,ENST00000360466.2,ENST00000450390.2,ENST00000349431.6,ENST00000339385.6,ENST00000348298.7,ENST00000464036.1,ENST00000400930.4,ENST00000347370.2	chr1	1190818:1190867:1191424:1191505:1192371:1192510,	1191425	1191505	1191442	1191443	Frame_Shift_Del	AT	-	p.L159fs
HNSC	TCGA-CV-7242-01	TRIM21	ENST00000254436.7	chr11	4408197:4408220:4409529:4409760:4410883:4410979,	4409530	4409760	4409705	4409705	Frame_Shift_Del	T	-	p.N187fs
HNSC	TCGA-CV-7242-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113351810	113351811	Frame_Shift_Ins	-	G	p.H369fs
HNSC	TCGA-CV-7243-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93202792:93202932:93205054:93205210:93206755:93206869,	93205055	93205210	93205154	93205158	Frame_Shift_Del	CTTGT	-	p.D699fs
HNSC	TCGA-CV-7245-01	CRISP3	ENST00000433368.2,ENST00000393666.1,ENST00000263045.4,ENST00000371159.4,ENST00000423399.2	chr6	49696420:49696570:49698875:49698964:49700907:49701005,	49698876	49698964	49698934	49698935	Frame_Shift_Ins	-	G	p.P184fs
HNSC	TCGA-CV-7247-01	EIF4G2	ENST00000534272.1	chr11	10820759:10820971:10821098:10821303:10821636:10821895,10820759:10820971:10821098:10821303:10821790:10821842,	10821099	10821303	10821256	10821260	Frame_Shift_Del	CCTTT	-	p.G721fs
HNSC	TCGA-CV-7247-01	LMTK2	ENST00000297293.5	chr7	97816188:97816310:97820039:97820189:97820925:97823884,	97820040	97820189	97820131	97820132	Frame_Shift_Del	AG	-	p.R364fs
HNSC	TCGA-CV-7248-01	STRADA	ENST00000577375.1,ENST00000582030.1,ENST00000245865.5,ENST00000580338.1,ENST00000579340.1,ENST00000375840.4	chr17	61790765:61790887:61791365:61791468:61803997:61804055,	61791366	61791468	61791420	61791420	Frame_Shift_Del	C	-	p.V58fs
HNSC	TCGA-CV-7248-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373725	242373726	Frame_Shift_Ins	-	T	p.S340fs
HNSC	TCGA-CV-7250-01	PGS1	ENST00000588169.1,ENST00000589689.1,ENST00000588281.1,ENST00000589426.1,ENST00000329897.7,ENST00000262764.6,ENST00000592043.1	chr17	76395428:76395618:76396757:76396936:76399648:76399760,	76396758	76396936	76396892	76396892	Frame_Shift_Del	A	-	p.D279fs
HNSC	TCGA-CV-7250-01	PGS1	ENST00000589425.1	chr17	76395428:76395618:76396815:76396936:76399648:76399760,	76396816	76396936	76396892	76396892	Frame_Shift_Del	A	-	p.D279fs
HNSC	TCGA-CV-7252-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578267	7578268	Frame_Shift_Ins	-	AG	p.L194fs
HNSC	TCGA-CV-7252-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539457	187539469	Frame_Shift_Del	CTTCAGTCTCCCG	-	p.S2757fs
HNSC	TCGA-CV-7253-01	RASA3	ENST00000542651.1	chr13	114817526:114817630:114839194:114839312:114897909:114898027,	114839195	114839312	114839224	114839225	Frame_Shift_Ins	-	A	p.F48fs
HNSC	TCGA-CV-7253-01	RIPK4	ENST00000332512.3,ENST00000544709.1,ENST00000542057.1	chr21	43165918:43166022:43166772:43166931:43169313:43169363,	43166773	43166931	43166897	43166898	Frame_Shift_Ins	-	A	p.V236fs
HNSC	TCGA-CV-7253-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638656	176638662	Frame_Shift_Del	AGTAAAG	-	p.S1086fs
HNSC	TCGA-CV-7253-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616583	116616584	Frame_Shift_Ins	-	A	p.C525fs
HNSC	TCGA-CV-7255-01	STIL	ENST00000371877.3,ENST00000360380.3,ENST00000337817.5,ENST00000396221.2,ENST00000243182.6	chr1	47716293:47717594:47725960:47726211:47728574:47728734,	47725961	47726211	47726187	47726202	Frame_Shift_Del	TATTTAATAGGTGGTT	-	p.N946fs
HNSC	TCGA-CV-7255-01	MMP15	ENST00000219271.3	chr16	58077113:58077264:58077415:58077531:58078910:58080805,	58077416	58077531	58077474	58077475	Frame_Shift_Ins	-	G	p.S505fs
HNSC	TCGA-CV-7255-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727094	137727097	Frame_Shift_Del	GAAA	-	p.R591fs
HNSC	TCGA-CV-7406-01	CASZ1	ENST00000377022.3,ENST00000496432.2,ENST00000344008.5	chr1	10714475:10714648:10715705:10715870:10716702:10716793,	10715706	10715870	10715845	10715857	Frame_Shift_Del	ATCACGTCCTGCT	-	p.K505fs
HNSC	TCGA-CV-7406-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39801943	39801943	Frame_Shift_Del	A	-	p.E1668fs
HNSC	TCGA-CV-7407-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71653593	71653596	Frame_Shift_Del	CCAT	-	p.P1532fs
HNSC	TCGA-CV-7410-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919453	57919454	Frame_Shift_Ins	-	T	p.R234fs
HNSC	TCGA-CV-7411-01	PADI2	ENST00000375486.4,ENST00000375481.1	chr1	17411093:17411197:17413015:17413194:17418902:17419028,	17413016	17413194	17413121	17413121	Frame_Shift_Del	A	-	p.G243fs
HNSC	TCGA-CV-7414-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539265	187539266	Frame_Shift_Ins	-	C	p.G2825fs
HNSC	TCGA-CV-7416-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442681	61442696	Frame_Shift_Del	TTCTTTGCTACTGGAA	-	p.I314fs
HNSC	TCGA-CV-7416-01	SHKBP1	ENST00000291842.5,ENST00000599575.1,ENST00000595945.1,ENST00000594973.1,ENST00000600718.1,ENST00000600733.1,ENST00000598907.1,ENST00000598201.1	chr19	41086229:41086391:41086471:41086562:41086651:41086744,	41086472	41086562	41086523	41086527	Frame_Shift_Del	GGATC	-	p.W205fs
HNSC	TCGA-CV-7418-01	GPR161	ENST00000361697.2,ENST00000537209.1	chr1	168065745:168066470:168073714:168074132:168104143:168104274,	168073715	168074132	168074064	168074068	Frame_Shift_Del	AGCTG	-	p.L7fs
HNSC	TCGA-CV-7421-01	LEMD2	ENST00000511171.1,ENST00000293760.5,ENST00000510598.1,ENST00000421671.2,ENST00000508327.1,ENST00000513832.1,ENST00000502643.1,ENST00000504692.1	chr6	33744811:33744833:33744914:33745016:33746018:33746116,	33744915	33745016	33744932	33744933	Frame_Shift_Ins	-	TC	p.M414fs
HNSC	TCGA-CV-7422-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540153	187540154	Frame_Shift_Ins	-	T	p.Y2529fs
HNSC	TCGA-CV-7423-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	443426:443516:446369:446606:449783:449927,	446370	446606	446516	446517	Frame_Shift_Ins	-	CA	p.L1909fs
HNSC	TCGA-CV-7424-01	LRP8	ENST00000465675.1,ENST00000354412.3	chr1	53736898:53737018:53746258:53746387:53755238:53755361,53741302:53741425:53746258:53746387:53755238:53755361,	53746259	53746387	53746315	53746316	Frame_Shift_Ins	-	A	p.R147fs
HNSC	TCGA-CV-7430-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000272273.5,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33590408:33590570:33614250:33614373:33622199:33622349,	33614251	33614373	33614263	33614282	Frame_Shift_Del	AGCTGTGTAACATCCCCGTG	-	p.Q1576fs
HNSC	TCGA-CV-7432-01	PKD1	ENST00000472659.1,ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2143670:2143739:2143811:2144014:2144092:2144147,	2143812	2144014	2143887	2143888	Frame_Shift_Ins	-	G	p.P3582fs
HNSC	TCGA-CV-7433-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026701	48026714	Frame_Shift_Del	CTGGAAGGTGATCC	-	p.L527fs
HNSC	TCGA-CV-7433-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026701	48026714	Frame_Shift_Del	CTGGAAGGTGATCC	-	p.L527fs
HNSC	TCGA-CV-7435-01	IAH1	ENST00000545602.1,ENST00000481367.1	chr2	9624560:9624679:9628275:9628521:9634830:9634989,	9628276	9628521	9628388	9628388	Frame_Shift_Del	T	-	p.L226fs
HNSC	TCGA-CV-7438-01	RIC3	ENST00000524799.1,ENST00000343202.4	chr11	8148205:8148351:8158924:8159018:8159818:8159894,	8158925	8159018	8158952	8158953	Frame_Shift_Ins	-	T	p.I165fs
HNSC	TCGA-CV-7440-01	RNF181	ENST00000441634.1,ENST00000306368.4	chr2	85823656:85823772:85823944:85824054:85824226:85824301,	85823945	85824054	85824002	85824006	Frame_Shift_Del	TGCCT	-	p.M92fs
HNSC	TCGA-CV-7440-01	RNF181	ENST00000443647.1	chr2	85823656:85823772:85823979:85824054:85824226:85824301,	85823980	85824054	85824002	85824006	Frame_Shift_Del	TGCCT	-	p.M92fs
HNSC	TCGA-CV-7440-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143095840	143095841	Frame_Shift_Ins	-	G	p.R397fs
HNSC	TCGA-CX-7082-01	SERPIND1	ENST00000215727.5,ENST00000406799.1	chr22	21133783:21134489:21138259:21138533:21140291:21140436,	21138260	21138533	21138419	21138420	Frame_Shift_Ins	-	G	p.V350fs
HNSC	TCGA-CX-7082-01	MEI1	ENST00000401548.3,ENST00000484966.1,ENST00000476893.1,ENST00000487535.1,ENST00000400107.1	chr22	42190374:42190481:42191414:42191546:42191738:42191777,	42191415	42191546	42191530	42191531	Frame_Shift_Ins	-	T	p.H1217fs
HNSC	TCGA-CX-7082-01	SURF2	ENST00000371964.4	chr9	136226825:136227005:136227140:136227310:136227931:136228045,	136227141	136227310	136227265	136227266	Frame_Shift_Del	GA	-	p.R214fs
HNSC	TCGA-CX-7086-01	IAH1	ENST00000497473.1,ENST00000484826.1,ENST00000482918.1,ENST00000470914.1,ENST00000492223.1,ENST00000481688.1,ENST00000545602.1,ENST00000351760.7,ENST00000481367.1,ENST00000487850.1	chr2	9621414:9621576:9624560:9624679:9628275:9628366,	9624561	9624679	9624665	9624666	Frame_Shift_Ins	-	T	p.M184fs
HNSC	TCGA-D6-6516-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44914925:44914997:44918528:44918705:44920866:44921042,	44918529	44918705	44918568	44918568	Frame_Shift_Del	C	-	p.K735fs
HNSC	TCGA-D6-6516-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121693963:121694092:121694994:121695141:121698853:121698996,	121694995	121695141	121695040	121695041	Frame_Shift_Ins	-	AT	p.N2143fs
HNSC	TCGA-D6-6517-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261022	151261023	Frame_Shift_Ins	-	T	p.M712fs
HNSC	TCGA-D6-6517-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41084301:41084390:41088505:41088662:41088819:41089032,	41088506	41088662	41088557	41088563	Frame_Shift_Del	CACAATC	-	p.D2371fs
HNSC	TCGA-D6-6826-01	CAPZA1	ENST00000476936.1,ENST00000466066.1,ENST00000263168.3	chr1	113202322:113202401:113209695:113209767:113212164:113212216,	113209696	113209767	113209755	113209758	Frame_Shift_Del	ACTA	-	p.S215fs
HNSC	TCGA-DQ-5624-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578183	7578184	Frame_Shift_Ins	-	GGCT	p.P222fs
HNSC	TCGA-DQ-5625-01	DDX11	ENST00000542661.1	chr12	31250818:31250931:31255176:31255245:31255360:31255461,	31255177	31255245	31255240	31255241	Frame_Shift_Ins	-	T	p.I756fs
HNSC	TCGA-DQ-5625-01	CNOT10	ENST00000538368.1,ENST00000463697.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000455381.1	chr3	32757716:32757803:32758645:32758729:32761605:32761723,	32758646	32758729	32758664	32758665	Frame_Shift_Ins	-	T	p.I227fs
HNSC	TCGA-DQ-5629-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542674	187542675	Frame_Shift_Ins	-	CC	p.V1689fs
HNSC	TCGA-DQ-5630-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576868	7576886	Frame_Shift_Del	TTCTCCATCCAGTGGTTTC	-	p.K320fs
HNSC	TCGA-DQ-5631-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539889	120539893	Frame_Shift_Del	GTGGT	-	p.T160fs
HNSC	TCGA-DQ-5631-01	ENO3	ENST00000521659.1,ENST00000522798.1,ENST00000519602.1,ENST00000518175.1,ENST00000520221.1,ENST00000522249.1,ENST00000522301.1,ENST00000521811.1,ENST00000519834.1,ENST00000323997.6	chr17	4856089:4856185:4856345:4856404:4856566:4856636,	4856346	4856404	4856404	4856404	Frame_Shift_Del	G	-	p.K80fs
HNSC	TCGA-DQ-7591-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18853529:18853776:18856750:18856973:18858774:18858929,	18856751	18856973	18856797	18856807	Frame_Shift_Del	GGAGTCTTCAG	-	p.L2055fs
HNSC	TCGA-DQ-7592-01	ESR1	ENST00000440973.1	chr6	152023009:152023140:152128977:152129499:152163731:152163922,	152128978	152129499	152129337	152129338	Frame_Shift_Ins	-	C	p.F97fs
HNSC	TCGA-HD-7229-01	MPP3	ENST00000398393.1,ENST00000589375.1,ENST00000496503.1,ENST00000398389.4	chr17	41895413:41895478:41898229:41898426:41901298:41901373,	41898230	41898426	41898342	41898343	Frame_Shift_Ins	-	GC	p.R256fs
HNSC	TCGA-HD-7831-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578205	7578206	Frame_Shift_Ins	-	T	p.S215fs
HNSC	TCGA-IQ-7631-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
HNSC	TCGA-IQ-7631-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
KICH	TCGA-KL-8339-01	METTL15	ENST00000406787.3,ENST00000407364.3,ENST00000342303.5,ENST00000303459.6	chr11	28134864:28135151:28232608:28232745:28311752:28311944,	28232609	28232745	28232627	28232627	Frame_Shift_Del	T	-	p.T96fs
KICH	TCGA-KO-8417-01	PPDPF	ENST00000370177.1	chr20	62152129:62152247:62152636:62152716:62152864:62152882,	62152637	62152716	62152686	62152687	Frame_Shift_Ins	-	CC	p.S9fs
KICH	TCGA-KO-8410-01	ITGA2	ENST00000503810.2,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52374601:52374704:52376340:52376451:52377421:52377526,	52376341	52376451	52376390	52376393	Frame_Shift_Del	TCCC	-	p.993_994del
KICH	TCGA-KN-8427-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630641	158630641	Frame_Shift_Del	C	-	p.K10fs
KICH	TCGA-KN-8432-01	MTCH1	ENST00000538808.1,ENST00000373616.5,ENST00000471737.1,ENST00000460219.1,ENST00000373627.5,ENST00000418541.2	chr6	36937831:36937890:36938181:36938249:36938422:36938470,	36938182	36938249	36938223	36938223	Frame_Shift_Del	G	-	p.F311fs
KICH	TCGA-KL-8335-01	PCGF1	ENST00000233630.6	chr2	74733858:74734011:74734168:74734274:74734702:74735707,	74734169	74734274	74734182	74734183	Frame_Shift_Del	CT	-	p.62_63del
KICH	TCGA-KN-8436-01	FAT1	ENST00000441802.2	chr4	187560875:187560937:187584452:187584767:187627716:187630999,	187584453	187584767	187584589	187584589	Frame_Shift_Del	G	-	p.M1149fs
KICH	TCGA-KO-8408-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579716	7579716	Frame_Shift_Del	G	-	p.P27fs
KICH	TCGA-KO-8408-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937378	76937378	Frame_Shift_Del	A	-	p.S1086fs
KICH	TCGA-KM-8639-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000560372.1,ENST00000509867.2,ENST00000358602.4	chr4	74012480:74012590:74012957:74013149:74014529:74014767,	74012958	74013149	74012976	74012979	Frame_Shift_Del	TAAC	-	p.580_581del
KICH	TCGA-KM-8639-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135777991:135778174:135779037:135779204:135779797:135779841,	135779038	135779204	135779084	135779093	Frame_Shift_Del	CGGAGGAGCC	-	p.667_670del
KICH	TCGA-KL-8330-01	RBM47	ENST00000510871.1	chr4	40434725:40434879:40438457:40438902:40439787:40440814,	40438458	40438902	40438607	40438608	Frame_Shift_Ins	-	T	p.R394fs
KICH	TCGA-KL-8330-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000514014.1	chr4	40434725:40434879:40438457:40438664:40439787:40440814,	40438458	40438664	40438607	40438608	Frame_Shift_Ins	-	T	p.R394fs
KICH	TCGA-KN-8435-01	NECAB3	ENST00000493590.1	chr20	32257492:32257518:32258489:32258566:32260203:32260228,	32258490	32258566	32258501	32258501	Frame_Shift_Del	C	-	p.H85fs
KICH	TCGA-KN-8435-01	NECAB3	ENST00000488489.1	chr20	32257492:32257518:32258489:32258587:32260203:32260228,	32258490	32258587	32258501	32258501	Frame_Shift_Del	C	-	p.H85fs
KICH	TCGA-KN-8435-01	NECAB3	ENST00000607805.1,ENST00000246190.6,ENST00000485399.1,ENST00000484824.2,ENST00000375238.4,ENST00000606690.1,ENST00000439478.1	chr20	32257492:32257518:32258489:32258598:32260203:32260228,	32258490	32258598	32258501	32258501	Frame_Shift_Del	C	-	p.H85fs
KICH	TCGA-KM-8438-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150772341:150772595:150772692:150772862:150773099:150773273,	150772693	150772862	150772848	150772851	Frame_Shift_Del	ACTT	-	p.1138_1139del
KICH	TCGA-KM-8438-01	HNF1A	ENST00000400024.2,ENST00000257555.6,ENST00000543427.1,ENST00000560968.1,ENST00000402929.1,ENST00000544413.1,ENST00000541395.1	chr12	121426635:121426835:121431322:121431509:121431966:121432003,	121431323	121431509	121431369	121431370	Frame_Shift_Ins	-	G	p.G191fs
KICH	TCGA-KN-8424-01	LLGL2	ENST00000392550.3,ENST00000578638.1,ENST00000545227.2,ENST00000577500.1,ENST00000577200.1,ENST00000578719.1,ENST00000167462.5	chr17	73565301:73565406:73566043:73566336:73566428:73566517,	73566044	73566336	73566231	73566231	Frame_Shift_Del	T	-	p.V590fs
KICH	TCGA-KL-8332-01	LARP7	ENST00000509622.1	chr4	113558680:113558759:113565823:113565924:113567506:113567607,113558348:113558395:113565823:113565924:113567506:113567607,	113565824	113565924	113565882	113565883	Frame_Shift_Ins	-	A	p.K19fs
KICH	TCGA-KL-8332-01	LARP7	ENST00000324052.6,ENST00000505034.1	chr4	113558680:113558759:113565823:113566027:113567506:113567607,	113565824	113566027	113565882	113565883	Frame_Shift_Ins	-	A	p.K19fs
KICH	TCGA-KL-8343-01	RCN1	ENST00000054950.3	chr11	32112449:32112996:32118689:32118883:32119895:32120004,	32118690	32118883	32118784	32118784	Frame_Shift_Del	T	-	p.I116fs
KICH	TCGA-KO-8404-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877304	38877304	Frame_Shift_Del	A	-	p.T146fs
KICH	TCGA-KL-8345-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711920	89711926	Frame_Shift_Del	TACCTGT	-	p.179_181del
KICH	TCGA-KN-8433-01	SLK	ENST00000369755.3,ENST00000335753.4	chr10	105761201:105761330:105761929:105763285:105765318:105765449,	105761930	105763285	105762029	105762030	Frame_Shift_Ins	-	A	p.E365fs
KICH	TCGA-KN-8425-01	RPL11	ENST00000458455.1,ENST00000482370.1,ENST00000374550.3	chr1	24020378:24020403:24021149:24021281:24022287:24022398,	24021150	24021281	24021261	24021261	Frame_Shift_Del	T	-	p.I125fs
KICH	TCGA-KL-8326-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073232	197073232	Frame_Shift_Del	T	-	p.I1717fs
KICH	TCGA-KL-8328-01	E2F7	ENST00000322886.7	chr12	77415027:77417965:77419337:77419762:77421662:77421918,	77419338	77419762	77419489	77419490	Frame_Shift_Del	TT	-	p.K805fs
KICH	TCGA-KL-8329-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766233	70766233	Frame_Shift_Del	T	-	p.F311fs
KICH	TCGA-KL-8329-01	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000377653.2,ENST00000358144.2	chr9	39177314:39177499:39178153:39178357:39193124:39193272,	39178154	39178357	39178299	39178299	Frame_Shift_Del	T	-	p.K199fs
KICH	TCGA-KL-8329-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264086	1264087	Frame_Shift_Ins	-	C	p.W1992fs
KICH	TCGA-KL-8330-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	399145:399259:404917:405073:406929:407069,	404918	405073	405015	405015	Frame_Shift_Del	T	-	p.L1111fs
KICH	TCGA-KL-8330-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618824	618824	Frame_Shift_Del	A	-	p.S579fs
KICH	TCGA-KL-8330-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618827	618827	Frame_Shift_Del	T	-	p.T578fs
KICH	TCGA-KL-8334-01	ENAH	ENST00000366844.3,ENST00000284563.6,ENST00000366843.2	chr1	225700572:225700718:225702297:225702602:225704897:225705008,	225702298	225702602	225702514	225702515	Frame_Shift_Ins	-	G	p.P334fs
KICH	TCGA-KL-8335-01	PCGF1	ENST00000233630.6	chr2	74733858:74734011:74734168:74734274:74734702:74735707,	74734169	74734274	74734182	74734183	Frame_Shift_Del	CT	-	p.E62fs
KICH	TCGA-KL-8335-01	CHD2	ENST00000557381.1,ENST00000556930.1,ENST00000420239.2,ENST00000536619.1,ENST00000556270.1,ENST00000394196.4	chr15	93472259:93472321:93480747:93480855:93482807:93482948,	93480748	93480855	93480819	93480819	Frame_Shift_Del	A	-	p.Q172fs
KICH	TCGA-KL-8336-01	SLC35F5	ENST00000409342.1,ENST00000409106.1,ENST00000245680.2,ENST00000498768.1	chr2	114503853:114503916:114508001:114508145:114512741:114512883,	114508002	114508145	114508020	114508020	Frame_Shift_Del	G	-	p.R133fs
KICH	TCGA-KL-8337-01	SH2D2A	ENST00000368198.3,ENST00000368199.3,ENST00000392306.2	chr1	156776035:156776365:156776966:156777137:156778994:156779282,	156776967	156777137	156777068	156777069	Frame_Shift_Ins	-	T	p.Q367fs
KICH	TCGA-KL-8337-01	COL9A3	ENST00000343916.3,ENST00000452372.1,ENST00000477612.1,ENST00000489045.1	chr20	61449869:61449905:61450573:61450645:61451280:61451334,	61450574	61450645	61450635	61450636	Frame_Shift_Ins	-	G	p.P82fs
KICH	TCGA-KL-8338-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471453	93471453	Frame_Shift_Del	T	-	p.K94fs
KICH	TCGA-KL-8338-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471453	93471453	Frame_Shift_Del	T	-	p.K94fs
KICH	TCGA-KL-8339-01	CPNE3	ENST00000517391.1,ENST00000521271.1,ENST00000198765.4	chr8	87557024:87557066:87558822:87558909:87559938:87559998,	87558823	87558909	87558847	87558847	Frame_Shift_Del	A	-	p.K253fs
KICH	TCGA-KL-8339-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	399145:399259:404917:405073:406929:407069,	404918	405073	405015	405015	Frame_Shift_Del	T	-	p.L1111fs
KICH	TCGA-KL-8339-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264078	1264079	Frame_Shift_Ins	-	C	p.T1990fs
KICH	TCGA-KL-8339-01	METTL15	ENST00000406787.3,ENST00000407364.3,ENST00000342303.5,ENST00000303459.6	chr11	28134864:28135151:28232608:28232745:28311752:28311944,	28232609	28232745	28232627	28232627	Frame_Shift_Del	T	-	p.F97fs
KICH	TCGA-KL-8341-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000507379.1,ENST00000257430.4	chr5	112151191:112151290:112154662:112155041:112157592:112157688,	112154663	112155041	112155000	112155001	Frame_Shift_Ins	-	G	p.Q424fs
KICH	TCGA-KL-8341-01	SNX1	ENST00000559844.1,ENST00000261889.5,ENST00000561026.1,ENST00000380285.3,ENST00000560829.1	chr15	64424027:64424091:64426862:64427006:64428528:64428608,	64426863	64427006	64426911	64426912	Frame_Shift_Ins	-	A	p.Q424fs
KICH	TCGA-KL-8342-01	ZCCHC4	ENST00000505412.1,ENST00000302874.4	chr4	25351113:25351264:25353210:25353311:25363480:25363602,	25353211	25353311	25353254	25353254	Frame_Shift_Del	T	-	p.Y318fs
KICH	TCGA-KL-8342-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2	chr9	96214665:96214671:96233422:96233669:96238537:96238620,	96233423	96233669	96233575	96233576	Frame_Shift_Ins	-	A	p.G209fs
KICH	TCGA-KL-8342-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36430411	36430412	Frame_Shift_Ins	-	C	p.C28fs
KICH	TCGA-KL-8343-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512280	195512281	Frame_Shift_Ins	-	G	p.V2057fs
KICH	TCGA-KL-8343-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P235fs
KICH	TCGA-KL-8343-01	RCN1	ENST00000054950.3	chr11	32112449:32112996:32118689:32118883:32119895:32120004,	32118690	32118883	32118784	32118784	Frame_Shift_Del	T	-	p.F117fs
KICH	TCGA-KL-8345-01	IL37	ENST00000353225.3	chr2	113670547:113670671:113671368:113671431:113675211:113675354,	113671369	113671431	113671391	113671392	Frame_Shift_Ins	-	C	p.E35fs
KICH	TCGA-KL-8345-01	MFSD10	ENST00000507555.1,ENST00000508221.1,ENST00000329687.4,ENST00000355443.4,ENST00000503596.1,ENST00000509676.1	chr4	2934832:2934936:2935293:2935390:2935479:2935671,	2935294	2935390	2935348	2935349	Frame_Shift_Ins	-	A	p.F71fs
KICH	TCGA-KL-8345-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711920	89711926	Frame_Shift_Del	TACCTGT	-	p.Y180fs
KICH	TCGA-KM-8438-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150772341:150772595:150772692:150772862:150773099:150773273,	150772693	150772862	150772848	150772851	Frame_Shift_Del	ACTT	-	p.T1153fs
KICH	TCGA-KM-8438-01	VMP1	ENST00000591877.1	chr17	57889030:57889147:57895072:57895134:57915655:57915758,57889030:57889147:57895072:57895134:57911372:57911411,	57895073	57895134	57895131	57895131	Frame_Shift_Del	T	-	p.I324fs
KICH	TCGA-KM-8439-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610646	30610646	Frame_Shift_Del	T	-	p.S264fs
KICH	TCGA-KM-8442-01	ANO10	ENST00000414522.2,ENST00000350459.4,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43602864:43602894:43607144:43607219:43640023:43640158,43602864:43602894:43607144:43607219:43616300:43616356,	43607145	43607219	43607195	43607195	Frame_Shift_Del	A	-	p.S415fs
KICH	TCGA-KM-8442-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831996	58831997	Frame_Shift_Del	AG	-	p.Q1063fs
KICH	TCGA-KM-8442-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34927419	34927420	Frame_Shift_Ins	-	C	p.S1961fs
KICH	TCGA-KM-8477-01	PTPN3	ENST00000262539.3,ENST00000374541.2	chr9	112219452:112219495:112219571:112219679:112225576:112225731,	112219572	112219679	112219611	112219612	Frame_Shift_Del	AT	-	p.Y69fs
KICH	TCGA-KM-8639-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000560372.1,ENST00000509867.2,ENST00000358602.4	chr4	74012480:74012590:74012957:74013149:74014529:74014767,	74012958	74013149	74012976	74012979	Frame_Shift_Del	TAAC	-	p.V580fs
KICH	TCGA-KM-8639-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135777991:135778174:135779037:135779204:135779797:135779841,	135779038	135779204	135779084	135779093	Frame_Shift_Del	CGGAGGAGCC	-	p.R718fs
KICH	TCGA-KM-8639-01	GIPC1	ENST00000345425.2	chr19	14591404:14591590:14593500:14593818:14602467:14602555,14591404:14591590:14593500:14593818:14606848:14606864,	14593501	14593818	14593617	14593618	Frame_Shift_Ins	-	A	p.R57fs
KICH	TCGA-KM-8639-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10084457:10084547:10085163:10085729:10090658:10090779,	10085164	10085729	10085451	10085452	Frame_Shift_Ins	-	A	p.S451fs
KICH	TCGA-KN-8418-01	HEXA	ENST00000567159.1,ENST00000567411.1,ENST00000268097.5,ENST00000566672.1,ENST00000429918.2,ENST00000566304.1	chr15	72638575:72638666:72640026:72640099:72640388:72640471,72638867:72639051:72640026:72640099:72640388:72640471,	72640027	72640099	72640036	72640037	Frame_Shift_Ins	-	T	p.N379fs
KICH	TCGA-KN-8422-01	CDH13	ENST00000268613.10,ENST00000566620.1,ENST00000539548.2,ENST00000428848.3	chr16	83520081:83520260:83636058:83636199:83704394:83704486,	83636059	83636199	83636109	83636110	Frame_Shift_Ins	-	G	p.A384fs
KICH	TCGA-KN-8423-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452519	58452519	Frame_Shift_Del	T	-	p.N1024fs
KICH	TCGA-KN-8425-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24567680:24567963:24573471:24573785:24574020:24574595,24572078:24572243:24573471:24573785:24574020:24574595,	24573472	24573785	24573681	24573681	Frame_Shift_Del	T	-	p.S2139fs
KICH	TCGA-KN-8427-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1271712	1271713	Frame_Shift_Ins	-	C	p.W4534fs
KICH	TCGA-KN-8428-01	STK10	ENST00000520476.1,ENST00000176763.5	chr5	171481572:171481698:171482591:171482780:171484352:171484477,	171482592	171482780	171482625	171482626	Frame_Shift_Ins	-	C	p.G831fs
KICH	TCGA-KN-8428-01	TMEM87A	ENST00000307216.6,ENST00000562946.1	chr15	42560144:42560230:42564260:42564321:42565452:42565513,	42564261	42564321	42564314	42564314	Frame_Shift_Del	T	-	p.N51fs
KICH	TCGA-KN-8429-01	TERT	ENST00000460137.2,ENST00000508104.2,ENST00000310581.5,ENST00000334602.6,ENST00000296820.5	chr5	1282543:1282739:1293427:1294781:1294885:1295104,	1293428	1294781	1294102	1294102	Frame_Shift_Del	C	-	p.G300fs
KICH	TCGA-KN-8429-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018550	1018551	Frame_Shift_Ins	-	G	p.P1417fs
KICH	TCGA-KN-8430-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77304814:77304891:77305240:77305568:77305708:77305818,	77305241	77305568	77305357	77305357	Frame_Shift_Del	T	-	p.I204fs
KICH	TCGA-KN-8430-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
KICH	TCGA-KN-8430-01	WDR59	ENST00000536050.1,ENST00000262144.6	chr16	74972148:74972164:74976635:74976724:74982416:74982454,	74976636	74976724	74976691	74976691	Frame_Shift_Del	T	-	p.N160fs
KICH	TCGA-KN-8431-01	DYRK1B	ENST00000593685.1,ENST00000323039.5,ENST00000597639.1,ENST00000600611.1,ENST00000430012.2,ENST00000348817.3	chr19	40320521:40320667:40321014:40321203:40321303:40321423,	40321015	40321203	40321175	40321176	Frame_Shift_Ins	-	C	p.A71fs
KICH	TCGA-KN-8432-01	MTCH1	ENST00000538808.1,ENST00000373616.5,ENST00000471737.1,ENST00000460219.1,ENST00000373627.5,ENST00000418541.2	chr6	36937831:36937890:36938181:36938249:36938422:36938470,	36938182	36938249	36938223	36938223	Frame_Shift_Del	G	-	p.P327fs
KICH	TCGA-KN-8432-01	SWAP70	ENST00000524817.1,ENST00000318950.6	chr11	9715692:9715833:9735012:9735186:9746204:9746432,	9735013	9735186	9735070	9735070	Frame_Shift_Del	A	-	p.K100fs
KICH	TCGA-KN-8435-01	NECAB3	ENST00000493590.1	chr20	32257492:32257518:32258489:32258566:32260203:32260228,	32258490	32258566	32258501	32258501	Frame_Shift_Del	C	-	p.G84fs
KICH	TCGA-KN-8435-01	NECAB3	ENST00000488489.1	chr20	32257492:32257518:32258489:32258587:32260203:32260228,	32258490	32258587	32258501	32258501	Frame_Shift_Del	C	-	p.G84fs
KICH	TCGA-KN-8435-01	NECAB3	ENST00000607805.1,ENST00000246190.6,ENST00000485399.1,ENST00000484824.2,ENST00000375238.4,ENST00000606690.1,ENST00000439478.1	chr20	32257492:32257518:32258489:32258598:32260203:32260228,	32258490	32258598	32258501	32258501	Frame_Shift_Del	C	-	p.G84fs
KICH	TCGA-KN-8436-01	FAT1	ENST00000441802.2	chr4	187560875:187560937:187584452:187584767:187627716:187630999,	187584453	187584767	187584589	187584589	Frame_Shift_Del	G	-	p.I1148fs
KICH	TCGA-KN-8437-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539779	120539780	Frame_Shift_Ins	-	G	p.T197fs
KICH	TCGA-KN-8437-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290264	132290265	Frame_Shift_Ins	-	C	p.L262fs
KICH	TCGA-KN-8437-01	RPAP3	ENST00000432584.3	chr12	48091379:48091502:48095246:48095387:48099734:48099769,	48095247	48095387	48095315	48095315	Frame_Shift_Del	T	-	p.T76fs
KICH	TCGA-KO-8404-01	OCLN	ENST00000396442.2,ENST00000380766.2,ENST00000355237.2,ENST00000542132.1,ENST00000538151.1	chr5	68830520:68830666:68840730:68840946:68843756:68843928,	68840731	68840946	68840857	68840857	Frame_Shift_Del	A	-	p.G388fs
KICH	TCGA-KO-8404-01	SMO	ENST00000249373.3,ENST00000462420.1	chr7	128845621:128845623:128845990:128846210:128846304:128846428,	128845991	128846210	128846110	128846111	Frame_Shift_Ins	-	C	p.G347fs
KICH	TCGA-KO-8404-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133912485:133912584:133913597:133913798:133918932:133919145,	133913598	133913798	133913781	133913782	Frame_Shift_Ins	-	C	p.G1206fs
KICH	TCGA-KO-8404-01	TG	ENST00000518505.1	chr8	133912485:133912584:133913666:133913798:133918932:133919145,	133913667	133913798	133913781	133913782	Frame_Shift_Ins	-	C	p.G1206fs
KICH	TCGA-KO-8404-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000543978.1,ENST00000524984.1,ENST00000531879.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000528173.1,ENST00000527911.1	chr11	46398073:46398114:46398622:46398762:46399747:46399779,	46398623	46398762	46398729	46398730	Frame_Shift_Del	CT	-	p.P958fs
KICH	TCGA-KO-8404-01	FRMD8	ENST00000526201.1,ENST00000416776.2	chr11	65156855:65156999:65161511:65161570:65161729:65161896,	65161512	65161570	65161559	65161560	Frame_Shift_Ins	-	G	p.R135fs
KICH	TCGA-KO-8404-01	CHRFAM7A	ENST00000397827.3,ENST00000401522.3,ENST00000299847.2	chr15	30654260:30655014:30659620:30659730:30663300:30663387,	30659621	30659730	30659650	30659651	Frame_Shift_Ins	-	G	p.H230fs
KICH	TCGA-KO-8404-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17700804	17700805	Frame_Shift_Ins	-	C	p.R1514fs
KICH	TCGA-KO-8404-01	LGALS9C	ENST00000584941.1,ENST00000582333.1,ENST00000583322.1,ENST00000578983.1,ENST00000328114.6	chr17	18380113:18380207:18387188:18387280:18389247:18389449,	18387189	18387280	18387252	18387252	Frame_Shift_Del	G	-	p.G35fs
KICH	TCGA-KO-8405-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263525	1263526	Frame_Shift_Ins	-	G	p.G1805fs
KICH	TCGA-KO-8405-01	CNTD2	ENST00000430325.2	chr19	40730394:40730550:40730628:40730718:40732281:40732564,	40730629	40730718	40730638	40730639	Frame_Shift_Ins	-	C	p.V116fs
KICH	TCGA-KO-8407-01	ATP2B4	ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203691706:203691817:203693008:203693116:203696522:203696699,	203693009	203693116	203693038	203693039	Frame_Shift_Ins	-	T	p.P1018fs
KICH	TCGA-KO-8407-01	WWP1	ENST00000265428.4,ENST00000517970.1	chr8	87410803:87410867:87414247:87414432:87423766:87424103,	87414248	87414432	87414376	87414376	Frame_Shift_Del	G	-	p.R223fs
KICH	TCGA-KO-8407-01	FRMD8	ENST00000317568.5,ENST00000416776.2,ENST00000355991.5	chr11	65168194:65168338:65172334:65172539:65178712:65179251,	65172335	65172539	65172422	65172423	Frame_Shift_Ins	-	C	p.S387fs
KICH	TCGA-KO-8407-01	SEPT9	ENST00000329047.8,ENST00000590294.1	chr17	75303222:75303279:75398140:75398785:75478225:75478417,75369418:75369634:75398140:75398785:75478225:75478417,75277532:75277636:75398140:75398785:75478225:75478417,75316394:75316430:75398140:75398785:75478225:75478417,	75398141	75398785	75398360	75398361	Frame_Shift_Ins	-	G	p.K99fs
KICH	TCGA-KO-8407-01	APP	ENST00000448850.1,ENST00000440126.3,ENST00000357903.3	chr21	27369674:27369731:27372329:27372497:27394155:27394243,27354656:27354790:27372329:27372497:27394155:27394243,	27372330	27372497	27372385	27372386	Frame_Shift_Ins	-	C	p.G326fs
KICH	TCGA-KO-8408-01	ALS2CL	ENST00000434140.1,ENST00000415953.1,ENST00000318962.4,ENST00000431015.1,ENST00000423707.1,ENST00000450172.1	chr3	46727797:46727929:46728472:46728638:46729108:46729174,	46728473	46728638	46728540	46728541	Frame_Shift_Ins	-	G	p.Q156fs
KICH	TCGA-KO-8408-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49049218	49049218	Frame_Shift_Del	T	-	p.V114fs
KICH	TCGA-KO-8408-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49049218	49049218	Frame_Shift_Del	T	-	p.V114fs
KICH	TCGA-KO-8408-01	HR	ENST00000381418.4,ENST00000312841.8	chr8	21979125:21979207:21980005:21980121:21980302:21980364,	21980006	21980121	21980059	21980060	Frame_Shift_Ins	-	G	p.H689fs
KICH	TCGA-KO-8408-01	AP2A2	ENST00000534328.1,ENST00000524559.1,ENST00000332231.5,ENST00000531548.1,ENST00000534485.1,ENST00000529818.1,ENST00000528815.1,ENST00000448903.2,ENST00000526753.1,ENST00000530801.1,ENST00000527024.1	chr11	959436:959505:970168:970311:972061:972191,	970169	970311	970195	970195	Frame_Shift_Del	A	-	p.K55fs
KICH	TCGA-KO-8408-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3789810:3789974:3792977:3793158:3794861:3794969,	3792978	3793158	3793077	3793078	Frame_Shift_Ins	-	A	p.F228fs
KICH	TCGA-KO-8408-01	SLC35F2	ENST00000532513.2	chr11	107675443:107675496:107676084:107676241:107677442:107677602,107673726:107673881:107676084:107676241:107677442:107677602,	107676085	107676241	107676203	107676204	Frame_Shift_Ins	-	A	p.L204fs
KICH	TCGA-KO-8408-01	ST14	ENST00000278742.5	chr11	130078312:130078579:130079336:130079473:130079556:130080271,	130079337	130079473	130079400	130079401	Frame_Shift_Ins	-	C	p.N778fs
KICH	TCGA-KO-8408-01	FERMT1	ENST00000217289.4	chr20	6088178:6088281:6090944:6091158:6093123:6093270,	6090945	6091158	6091014	6091015	Frame_Shift_Ins	-	G	p.Q226fs
KICH	TCGA-KO-8408-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937378	76937378	Frame_Shift_Del	A	-	p.S1124fs
KICH	TCGA-KO-8408-01	SYTL4	ENST00000263033.5,ENST00000454200.2,ENST00000372989.1,ENST00000455616.1,ENST00000276141.6	chrX	99941675:99941778:99942063:99942242:99943347:99943440,	99942064	99942242	99942167	99942168	Frame_Shift_Ins	-	A	p.I360fs
KICH	TCGA-KO-8409-01	PLA2G4D	ENST00000290472.3	chr15	42359880:42361139:42362106:42362293:42362914:42363081,	42362107	42362293	42362217	42362218	Frame_Shift_Ins	-	G	p.Q707fs
KICH	TCGA-KO-8409-01	TTLL6	ENST00000490027.1,ENST00000433608.2,ENST00000393382.3	chr17	46846350:46846616:46847089:46847459:46862284:46862563,	46847090	46847459	46847199	46847202	Frame_Shift_Del	CATG	-	p.D766fs
KICH	TCGA-KO-8409-01	FUZ	ENST00000528094.1,ENST00000445575.2,ENST00000525130.1,ENST00000527973.1,ENST00000313777.4,ENST00000533418.1,ENST00000377092.4,ENST00000525370.1	chr19	50311973:50312080:50312419:50312515:50312634:50312832,	50312420	50312515	50312460	50312461	Frame_Shift_Ins	-	G	p.L249fs
KICH	TCGA-KO-8410-01	ITGA2	ENST00000503810.2,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52374601:52374704:52376340:52376451:52377421:52377526,	52376341	52376451	52376390	52376393	Frame_Shift_Del	TCCC	-	p.I993fs
KICH	TCGA-KO-8410-01	SIRT1	ENST00000212015.6,ENST00000497639.1	chr10	69647174:69647291:69648639:69648881:69651159:69651254,	69648640	69648881	69648852	69648852	Frame_Shift_Del	A	-	p.K254fs
KIRC	TCGA-AK-3429-01	ATP2B4	ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203691706:203691817:203693008:203693116:203696522:203696699,	203693009	203693116	203693035	203693036	Frame_Shift_Ins	-	C	p.K1017fs
KIRC	TCGA-AK-3429-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157564	106157565	Frame_Shift_Del	CC	-	p.822_822del
KIRC	TCGA-CZ-4865-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670340	151670340	Frame_Shift_Del	A	-	p.E271fs
KIRC	TCGA-B0-5099-01	RAD54L	ENST00000442598.1,ENST00000371975.4,ENST00000493985.1,ENST00000472889.1,ENST00000469835.1	chr1	46725635:46725771:46726213:46726283:46726398:46726529,	46726214	46726283	46726269	46726269	Frame_Shift_Del	C	-	p.R154fs
KIRC	TCGA-B0-5099-01	DHRS13	ENST00000394901.3,ENST00000378895.4	chr17	27225840:27225910:27228007:27228319:27228510:27228634,	27228008	27228319	27228249	27228249	Frame_Shift_Del	A	-	p.L148fs
KIRC	TCGA-B0-5099-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000303354.6,ENST00000409672.1	chr2	167055181:167056374:167060464:167060735:167060869:167060974,	167060465	167060735	167060645	167060645	Frame_Shift_Del	T	-	p.M1521fs
KIRC	TCGA-BP-4971-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283260	74283260	Frame_Shift_Del	T	-	p.R434fs
KIRC	TCGA-B0-5107-01	NTN4	ENST00000553059.1	chr12	96131866:96131922:96180716:96181246:96184889:96184930,96131866:96131922:96180716:96181246:96184032:96184087,	96180717	96181246	96181160	96181161	Frame_Shift_Del	AG	-	p.48_48del
KIRC	TCGA-B0-5107-01	POC1B	ENST00000378528.2,ENST00000539190.2,ENST00000549035.1,ENST00000313546.3	chr12	89865944:89866052:89885712:89885892:89890947:89891034,	89885713	89885892	89885726	89885726	Frame_Shift_Del	C	-	p.V147fs
KIRC	TCGA-B0-5107-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560575	32560575	Frame_Shift_Del	A	-	p.V233fs
KIRC	TCGA-B0-5705-01	CTNND2	ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	10981884:10981958:10988222:10988354:10992662:10992789,	10988223	10988354	10988302	10988303	Frame_Shift_Del	TG	-	p.1088_1089del
KIRC	TCGA-B0-5705-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056201	27056201	Frame_Shift_Del	C	-	p.N399fs
KIRC	TCGA-B0-5705-01	SH3TC1	ENST00000508641.1,ENST00000539824.1,ENST00000515682.1,ENST00000507891.1,ENST00000245105.3	chr4	8217929:8217984:8218683:8218894:8219997:8220074,	8218684	8218894	8218768	8218768	Frame_Shift_Del	G	-	p.R238fs
KIRC	TCGA-B0-5705-01	ADCY6	ENST00000552099.1	chr12	49166290:49166326:49167251:49167881:49168184:49168289,	49167252	49167881	49167327	49167327	Frame_Shift_Del	T	-	p.Y849fs
KIRC	TCGA-B0-5705-01	ADCY6	ENST00000548351.1,ENST00000547260.1,ENST00000307885.4	chr12	49166290:49166326:49167251:49167430:49168184:49168289,49166290:49166326:49167251:49167430:49167722:49167807,	49167252	49167430	49167327	49167327	Frame_Shift_Del	T	-	p.Y849fs
KIRC	TCGA-B0-5705-01	SLC15A4	ENST00000376744.4,ENST00000539703.1	chr12	129294487:129294598:129299319:129299615:129307942:129308067,129293940:129294018:129299319:129299615:129307942:129308067,	129299320	129299615	129299594	129299595	Frame_Shift_Ins	-	T	p.A190fs
KIRC	TCGA-B0-5705-01	CXADR	ENST00000400166.1	chr21	18924066:18924271:18931293:18931449:18937745:18937805,	18931294	18931449	18931362	18931363	Frame_Shift_Del	TG	-	p.161_162del
KIRC	TCGA-B8-A54J-01	HNRNPH1	ENST00000511300.2,ENST00000510678.1,ENST00000523449.1,ENST00000510411.1,ENST00000514332.1,ENST00000502904.1,ENST00000356731.5,ENST00000442819.2,ENST00000393432.4,ENST00000519033.1,ENST00000502632.1	chr5	179041890:179041960:179042546:179042596:179043126:179043181,	179042547	179042596	179042560	179042560	Frame_Shift_Del	G	-	p.S446fs
KIRC	TCGA-B8-A54J-01	HNRNPH1	ENST00000511300.2,ENST00000510678.1,ENST00000523449.1,ENST00000510411.1,ENST00000514332.1,ENST00000502904.1,ENST00000356731.5,ENST00000442819.2,ENST00000393432.4,ENST00000519033.1,ENST00000502632.1	chr5	179041890:179041960:179042546:179042596:179043126:179043181,	179042547	179042596	179042565	179042565	Frame_Shift_Del	A	-	p.Q445fs
KIRC	TCGA-A3-3382-01	CDK2	ENST00000556656.1,ENST00000556276.1,ENST00000266970.4,ENST00000555408.1,ENST00000556146.1	chr12	56362658:56362732:56363258:56363360:56364827:56364871,	56363259	56363360	56363264	56363265	Frame_Shift_Del	GA	-	p.164_164del
KIRC	TCGA-A3-3382-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142950	31142959	Frame_Shift_Del	CGTGTTTGAG	-	p.410_413del
KIRC	TCGA-A3-3382-01	FRS2	ENST00000299293.2,ENST00000549921.1,ENST00000397997.2,ENST00000550389.1	chr12	69965055:69965214:69965897:69966061:69967784:69968744,	69965898	69966061	69965989	69965989	Frame_Shift_Del	T	-	p.P168fs
KIRC	TCGA-CJ-5676-01	CHD2	ENST00000557381.1,ENST00000556930.1,ENST00000309818.5,ENST00000420239.2,ENST00000556722.1,ENST00000394196.4	chr15	93444396:93444529:93467550:93467782:93470473:93470560,	93467551	93467782	93467668	93467668	Frame_Shift_Del	T	-	p.S60fs
KIRC	TCGA-CJ-5676-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113460278	113460279	Frame_Shift_Ins	-	T	p.N250fs
KIRC	TCGA-BP-5189-01	ATP6V0B	ENST00000472174.2,ENST00000498664.1,ENST00000471859.2,ENST00000468183.1,ENST00000472505.2,ENST00000236067.4,ENST00000532642.1,ENST00000473485.1	chr1	44441973:44442051:44442261:44442331:44442444:44442495,	44442262	44442331	44442331	44442331	Frame_Shift_Del	G	-	p.E116fs
KIRC	TCGA-BP-5189-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53225097:53225236:53225867:53226226:53226952:53227058,	53225868	53226226	53225887	53225887	Frame_Shift_Del	G	-	p.H988fs
KIRC	TCGA-BP-5189-01	SOBP	ENST00000317357.5	chr6	107854662:107854814:107908283:107908379:107954717:107956673,	107908284	107908379	107908313	107908313	Frame_Shift_Del	T	-	p.N201fs
KIRC	TCGA-BP-5189-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117112	72117112	Frame_Shift_Del	G	-	p.E626fs
KIRC	TCGA-BP-5189-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117112	72117112	Frame_Shift_Del	G	-	p.E626fs
KIRC	TCGA-CJ-4634-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188296	10188297	Frame_Shift_Ins	-	TTTT	p.I147fs
KIRC	TCGA-CJ-4634-01	BCOR	ENST00000397354.3,ENST00000442018.1,ENST00000413905.1,ENST00000342274.4,ENST00000378444.4,ENST00000378455.4,ENST00000427012.1,ENST00000378463.1	chrX	39916407:39916574:39921391:39921646:39921998:39922190,	39921392	39921646	39921498	39921498	Frame_Shift_Del	T	-	p.Q1441fs
KIRC	TCGA-CJ-4634-01	AMHR2	ENST00000379791.3,ENST00000550311.1,ENST00000257863.4	chr12	53818071:53818254:53818492:53818684:53818948:53819026,	53818493	53818684	53818668	53818668	Frame_Shift_Del	T	-	p.G136fs
KIRC	TCGA-CJ-4634-01	EIF4B	ENST00000552490.1	chr12	53415589:53415644:53416276:53416411:53421565:53421592,53415589:53415644:53416276:53416411:53421798:53421957,	53416277	53416411	53416324	53416324	Frame_Shift_Del	A	-	p.D193fs
KIRC	TCGA-CJ-4634-01	BCOR	ENST00000397354.3,ENST00000442018.1,ENST00000413905.1,ENST00000342274.4,ENST00000378444.4,ENST00000378455.4,ENST00000427012.1,ENST00000378463.1	chrX	39916407:39916574:39921391:39921646:39921998:39922190,	39921392	39921646	39921479	39921495	Frame_Shift_Del	GCGAGACTGGGTGGTCT	-	p.1442_1448del
KIRC	TCGA-B0-5692-01	TRAF3IP2	ENST00000532708.1,ENST00000392556.4,ENST00000340026.6	chr6	111901399:111901592:111912460:111913297:111926978:111927073,111901399:111901592:111912460:111913297:111922398:111922509,	111912461	111913297	111912795	111912796	Frame_Shift_Ins	-	T	p.N165fs
KIRC	TCGA-B0-5692-01	NR3C2	ENST00000355292.3,ENST00000503313.1,ENST00000511528.1,ENST00000344721.4,ENST00000358102.3	chr4	149073619:149073764:149075701:149076052:149115896:149116013,	149075702	149076052	149075982	149075982	Frame_Shift_Del	T	-	p.P696fs
KIRC	TCGA-B0-5692-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248932	44248933	Frame_Shift_Ins	-	T	p.M193fs
KIRC	TCGA-B0-5692-01	ACSL6	ENST00000379255.1,ENST00000379249.3,ENST00000379244.1,ENST00000296869.4,ENST00000431707.1,ENST00000413683.1,ENST00000379272.2,ENST00000543479.1,ENST00000544770.1,ENST00000379264.2,ENST00000357096.1,ENST00000379246.1,ENST00000434099.1,ENST00000379240.1	chr5	131312340:131312414:131321099:131321151:131322514:131322547,	131321100	131321151	131321125	131321125	Frame_Shift_Del	A	-	p.V298fs
KIRC	TCGA-BP-4999-01	USP33	ENST00000370793.1,ENST00000370794.3,ENST00000357428.1	chr1	78163547:78163616:78167053:78167156:78177431:78177540,	78167054	78167156	78167136	78167136	Frame_Shift_Del	T	-	p.E841fs
KIRC	TCGA-BP-4999-01	ESYT2	ENST00000251527.5,ENST00000275418.7	chr7	158555773:158555856:158557367:158557544:158560344:158560465,	158557368	158557544	158557475	158557475	Frame_Shift_Del	C	-	p.V380fs
KIRC	TCGA-BP-4993-01	FKTN	ENST00000223528.2,ENST00000602526.1,ENST00000602661.1,ENST00000448551.2,ENST00000357998.5	chr9	108370099:108370232:108377558:108377688:108380239:108380373,	108377559	108377688	108377609	108377609	Frame_Shift_Del	A	-	p.A277fs
KIRC	TCGA-CJ-5675-01	DHX29	ENST00000513447.1	chr5	54567914:54568003:54569120:54569254:54570441:54570559,	54569121	54569254	54569200	54569201	Frame_Shift_Ins	-	TA	p.K899fs
KIRC	TCGA-CJ-5675-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54567914:54568003:54569120:54569205:54570441:54570559,	54569121	54569205	54569200	54569201	Frame_Shift_Ins	-	TA	p.K899fs
KIRC	TCGA-CJ-5675-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510825	195510825	Frame_Shift_Del	G	-	p.T2543fs
KIRC	TCGA-CJ-5675-01	PPP2R3B	ENST00000381625.4	chrX	308345:308428:322139:322325:334266:334779,	322140	322325	322172	322172	Frame_Shift_Del	C	-	p.A160fs
KIRC	TCGA-B8-5553-01	LIMS1	ENST00000409441.1,ENST00000544547.1,ENST00000338045.3,ENST00000332345.6,ENST00000410093.1,ENST00000542845.1,ENST00000393310.1	chr2	109294434:109294483:109297150:109297226:109300340:109300593,	109297151	109297226	109297164	109297165	Frame_Shift_Ins	-	A	p.L329fs
KIRC	TCGA-B8-5553-01	PIAS2	ENST00000590127.1,ENST00000545673.1,ENST00000592011.1,ENST00000585916.1,ENST00000398654.3,ENST00000324794.7,ENST00000592212.1	chr18	44424016:44424090:44424696:44424802:44426669:44426804,	44424697	44424802	44424802	44424803	Frame_Shift_Del	TC	-	p.288_288del
KIRC	TCGA-B8-5553-01	FUS	ENST00000487509.2,ENST00000474990.1,ENST00000569760.1,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31201595:31201719:31202062:31202163:31202283:31202423,	31202063	31202163	31202116	31202116	Frame_Shift_Del	C	-	p.A449fs
KIRC	TCGA-B8-5553-01	RGPD5	ENST00000393283.1,ENST00000272454.6,ENST00000016946.3	chr2	110581798:110581980:110582063:110582239:110582406:110582530,	110582064	110582239	110582105	110582105	Frame_Shift_Del	A	-	p.L500X
KIRC	TCGA-DV-5565-01	HMBOX1	ENST00000560599.1,ENST00000558662.1,ENST00000519047.1,ENST00000403668.2,ENST00000397358.3,ENST00000523613.1,ENST00000444075.1,ENST00000524238.1,ENST00000521516.1,ENST00000287701.10,ENST00000355231.5	chr8	28837587:28837673:28866588:28866699:28876276:28876416,	28866589	28866699	28866619	28866620	Frame_Shift_Ins	-	G	p.L206fs
KIRC	TCGA-DV-5565-01	TRMT1L	ENST00000367506.5,ENST00000367504.3	chr1	185109104:185109354:185112488:185112568:185113037:185113161,	185112489	185112568	185112542	185112543	Frame_Shift_Ins	-	C	p.A269fs
KIRC	TCGA-CJ-5681-01	RREB1	ENST00000379938.2,ENST00000471433.1,ENST00000483150.1,ENST00000379933.3,ENST00000349384.6,ENST00000334984.6	chr6	7181356:7181479:7182102:7182315:7187666:7187756,	7182103	7182315	7182250	7182251	Frame_Shift_Ins	-	G	p.S36fs
KIRC	TCGA-CJ-5681-01	ZCCHC14	ENST00000568020.1	chr16	87466733:87466807:87493613:87493737:87525274:87525465,	87493614	87493737	87493617	87493621	Frame_Shift_Del	TGCTG	-	p.93_94del
KIRC	TCGA-CJ-5681-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000482119.1,ENST00000314490.11,ENST00000472722.1	chr2	121554920:121555044:121684936:121685042:121708818:121709021,	121684937	121685042	121685023	121685026	Frame_Shift_Del	TCTG	-	p.78_79del
KIRC	TCGA-A3-3378-01	RPL12	ENST00000361436.5,ENST00000497322.1,ENST00000497825.1	chr9	130210615:130210702:130211559:130211641:130211888:130211979,	130211560	130211641	130211560	130211571	Frame_Shift_Del	TGTTTTTCTGTT	-	p.94_98del
KIRC	TCGA-A3-3378-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52675969:52676061:52677263:52677359:52678719:52678805,	52677264	52677359	52677285	52677285	Frame_Shift_Del	T	-	p.N325fs
KIRC	TCGA-A3-3378-01	PRSS12	ENST00000296498.3	chr4	119237336:119237478:119239532:119239711:119252870:119253021,	119239533	119239711	119239601	119239601	Frame_Shift_Del	T	-	p.K361fs
KIRC	TCGA-BP-5176-01	SFI1	ENST00000486708.1,ENST00000400288.2,ENST00000432498.1,ENST00000524296.1,ENST00000382162.3	chr22	31924675:31924849:31927043:31927115:31942846:31942957,	31927044	31927115	31927108	31927108	Frame_Shift_Del	A	-	p.S110fs
KIRC	TCGA-BP-5176-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108935	14108935	Frame_Shift_Del	T	-	p.S1548fs
KIRC	TCGA-BP-5176-01	NSUN6	ENST00000377304.4	chr10	18840751:18840900:18874877:18875022:18885136:18885256,	18874878	18875022	18874976	18874977	Frame_Shift_Ins	-	T	p.I275fs
KIRC	TCGA-BP-5176-01	FAM114A1	ENST00000358869.2,ENST00000512889.1,ENST00000515037.1	chr4	38916541:38916694:38924390:38924514:38930862:38930904,	38924391	38924514	38924467	38924470	Frame_Shift_Del	TCTT	-	p.341_342del
KIRC	TCGA-BP-5176-01	SLTM	ENST00000249736.7,ENST00000536328.1,ENST00000559880.1,ENST00000380516.2,ENST00000557950.1,ENST00000557924.1,ENST00000558756.1	chr15	59204761:59204809:59205697:59205895:59209133:59209198,	59205698	59205895	59205785	59205786	Frame_Shift_Del	TA	-	p.142_143del
KIRC	TCGA-B0-5694-01	MXD1	ENST00000435990.1,ENST00000264444.2	chr2	70143255:70143352:70148867:70148897:70162482:70162597,	70148868	70148897	70148882	70148882	Frame_Shift_Del	A	-	p.E63fs
KIRC	TCGA-B0-5694-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195509964	195509970	Frame_Shift_Del	ATGACCT	-	p.2828_2830del
KIRC	TCGA-B0-5694-01	PSRC1	ENST00000429031.1,ENST00000369907.3,ENST00000369909.2,ENST00000369903.2,ENST00000492431.1,ENST00000409267.1	chr1	109823607:109823668:109823758:109823873:109824240:109824301,	109823759	109823873	109823765	109823777	Frame_Shift_Del	CTGCTCTCCCACT	-	p.206_210del
KIRC	TCGA-A3-3316-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588839	52588839	Frame_Shift_Del	G	-	p.L1397fs
KIRC	TCGA-A3-3316-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188296	10188296	Frame_Shift_Del	A	-	p.P146fs
KIRC	TCGA-BP-4962-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961876	41961876	Frame_Shift_Del	G	-	p.D261fs
KIRC	TCGA-BP-4962-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188259	10188260	Frame_Shift_Ins	-	T	p.E134fs
KIRC	TCGA-BP-4962-01	ZMAT3	ENST00000311417.2,ENST00000414084.1,ENST00000432729.1	chr3	178745544:178745600:178748667:178748787:178785270:178785597,	178748668	178748787	178748683	178748683	Frame_Shift_Del	A	-	p.P126fs
KIRC	TCGA-B0-4823-01	ZC3HC1	ENST00000311873.5,ENST00000467642.1,ENST00000481503.1,ENST00000358303.4	chr7	129662158:129662365:129663350:129663563:129664102:129664217,	129663351	129663563	129663471	129663471	Frame_Shift_Del	G	-	p.T372fs
KIRC	TCGA-B0-4823-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17764666	17764666	Frame_Shift_Del	G	-	p.S1698fs
KIRC	TCGA-B0-4823-01	ECHDC1	ENST00000368292.6,ENST00000368287.1,ENST00000309620.9,ENST00000368291.2,ENST00000479525.2	chr6	127648155:127648289:127651953:127652175:127664105:127664491,127648155:127648289:127651953:127652175:127663500:127663552,127648155:127648289:127651953:127652175:127664480:127664493,	127651954	127652175	127652111	127652111	Frame_Shift_Del	T	-	p.G28fs
KIRC	TCGA-B0-4823-01	PSMA4	ENST00000559365.1,ENST00000560217.1,ENST00000560737.1,ENST00000559934.1,ENST00000413382.2,ENST00000559082.1,ENST00000044462.7,ENST00000560099.1	chr15	78837975:78838106:78838916:78839040:78841131:78841162,	78838917	78839040	78838988	78838989	Frame_Shift_Ins	-	AGCAA	p.A193fs
KIRC	TCGA-B0-4823-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188204	10188205	Frame_Shift_Del	TT	-	p.116_116del
KIRC	TCGA-CJ-5677-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484970	56484971	Frame_Shift_Del	AG	-	p.1288_1288del
KIRC	TCGA-CJ-5677-01	MCOLN3	ENST00000341115.4,ENST00000370589.2,ENST00000474447.1	chr1	85484590:85484940:85486752:85486959:85487752:85487875,	85486753	85486959	85486913	85486913	Frame_Shift_Del	T	-	p.N456fs
KIRC	TCGA-CJ-5677-01	CLIC5	ENST00000339561.6,ENST00000185206.6	chr6	45870802:45870992:45881964:45882146:45909283:45909390,	45881965	45882146	45882075	45882076	Frame_Shift_Del	TC	-	p.319_319del
KIRC	TCGA-BP-5007-01	SUPT7L	ENST00000337768.5,ENST00000406540.1,ENST00000464789.2,ENST00000405491.1	chr2	27878231:27878469:27880211:27880536:27883850:27884022,	27880212	27880536	27880496	27880497	Frame_Shift_Del	AG	-	p.154_154del
KIRC	TCGA-CZ-5457-01	NUP214	ENST00000451030.1,ENST00000525980.1,ENST00000524578.1,ENST00000359428.5,ENST00000531929.1,ENST00000453861.2,ENST00000411637.2	chr9	134065525:134065867:134067594:134067679:134072602:134074035,134064439:134064518:134067594:134067679:134070619:134070681,	134067595	134067679	134067639	134067640	Frame_Shift_Del	TC	-	p.1206_1207del
KIRC	TCGA-CZ-5457-01	PTH1R	ENST00000418619.1,ENST00000430002.2,ENST00000427125.2,ENST00000313049.5,ENST00000449590.1,ENST00000428220.1,ENST00000490109.1	chr3	46935396:46935499:46937224:46937359:46939344:46939455,	46937225	46937359	46937259	46937259	Frame_Shift_Del	T	-	p.S71fs
KIRC	TCGA-CZ-5457-01	ZFAT	ENST00000520727.1,ENST00000377838.3,ENST00000523399.1,ENST00000523243.1,ENST00000518408.1,ENST00000520214.1,ENST00000523924.1	chr8	135490635:135490964:135521861:135521992:135524717:135524844,	135521862	135521992	135521972	135521972	Frame_Shift_Del	C	-	p.A1128fs
KIRC	TCGA-A3-3346-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597506	52597506	Frame_Shift_Del	T	-	p.P1269fs
KIRC	TCGA-A3-3346-01	PBRM1	ENST00000394830.3	chr3	52595782:52595984:52597379:52597509:52598065:52598249,	52597380	52597509	52597506	52597506	Frame_Shift_Del	T	-	p.P1269fs
KIRC	TCGA-A3-3346-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000546757.1,ENST00000358214.5,ENST00000549926.1,ENST00000547312.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1,ENST00000551476.1	chr12	32861086:32861158:32863862:32863949:32866142:32866253,	32863863	32863949	32863894	32863894	Frame_Shift_Del	T	-	p.I134fs
KIRC	TCGA-A3-3346-01	TMEM68	ENST00000520414.1,ENST00000334667.2,ENST00000522090.1,ENST00000434581.2	chr8	56668916:56668970:56675193:56675587:56676494:56676539,	56675194	56675587	56675226	56675227	Frame_Shift_Ins	-	T	p.T98fs
KIRC	TCGA-A3-3346-01	ZNF846	ENST00000588267.1	chr19	9863065:9863116:9868734:9869440:9872757:9872841,	9868735	9869440	9869150	9869150	Frame_Shift_Del	T	-	p.D202fs
KIRC	TCGA-A3-3346-01	PSMG1	ENST00000380900.2	chr21	40549360:40549497:40550374:40550573:40552210:40552362,	40550375	40550573	40550409	40550409	Frame_Shift_Del	T	-	p.Q208fs
KIRC	TCGA-B2-4099-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1703754	1703754	Frame_Shift_Del	A	-	p.C312fs
KIRC	TCGA-B2-4099-01	SNX25	ENST00000264694.8,ENST00000504273.1,ENST00000504959.1	chr4	186267690:186267804:186272598:186272763:186274638:186274756,	186272599	186272763	186272695	186272695	Frame_Shift_Del	A	-	p.G635fs
KIRC	TCGA-CZ-5460-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17379447	17379448	Frame_Shift_Ins	-	C	p.Q666fs
KIRC	TCGA-B0-5400-01	DAPK1	ENST00000469067.1,ENST00000469640.2,ENST00000408954.3,ENST00000358077.5,ENST00000472284.1,ENST00000491893.1,ENST00000489291.1	chr9	90219868:90220090:90252857:90252996:90254268:90254398,	90252858	90252996	90252926	90252933	Frame_Shift_Del	AATTTCTC	-	p.118_120del
KIRC	TCGA-B8-4153-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188248	10188255	Frame_Shift_Del	AACCAAAC	-	p.130_133del
KIRC	TCGA-B8-4153-01	AKAP8L	ENST00000397410.5,ENST00000595879.1,ENST00000609519.1,ENST00000593845.1,ENST00000594594.2,ENST00000595465.2	chr19	15510112:15510221:15511105:15511169:15511604:15511675,	15511106	15511169	15511126	15511126	Frame_Shift_Del	C	-	p.G343fs
KIRC	TCGA-B8-4153-01	TREM2	ENST00000373122.4	chr6	41126244:41126518:41126610:41126844:41127529:41127620,	41126611	41126844	41126749	41126749	Frame_Shift_Del	C	-	p.A180fs
KIRC	TCGA-B8-4153-01	TREM2	ENST00000373113.3	chr6	41126244:41126518:41126610:41126804:41127529:41127620,	41126611	41126804	41126749	41126749	Frame_Shift_Del	C	-	p.A180fs
KIRC	TCGA-B8-4153-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112765959:112766052:112767524:112767643:112776989:112777099,	112767525	112767643	112767558	112767559	Frame_Shift_Ins	-	A	p.P665fs
KIRC	TCGA-A3-3372-01	ZNF277	ENST00000457808.1,ENST00000361946.4,ENST00000361822.3,ENST00000450657.1	chr7	111936283:111936366:111958236:111958328:111967771:111967882,	111958237	111958328	111958300	111958300	Frame_Shift_Del	T	-	p.M176fs
KIRC	TCGA-A3-3372-01	PDE4DIP	ENST00000529945.1,ENST00000479408.2,ENST00000369354.3,ENST00000313382.9,ENST00000369349.3,ENST00000369359.4,ENST00000369351.3,ENST00000313431.9,ENST00000369356.4,ENST00000530740.1	chr1	144922186:144922279:144922518:144922638:144923689:144923821,	144922519	144922638	144922606	144922607	Frame_Shift_Del	AT	-	p.430_431del
KIRC	TCGA-B8-A54H-01	CSPP1	ENST00000521324.1,ENST00000521168.1,ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68089914:68089961:68092097:68092161:68102884:68102994,	68092098	68092161	68092158	68092159	Frame_Shift_Ins	-	T	p.I1068fs
KIRC	TCGA-B8-A54H-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679630	21679631	Frame_Shift_Ins	-	T	p.D258fs
KIRC	TCGA-B8-A54H-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679630	21679631	Frame_Shift_Ins	-	T	p.D258fs
KIRC	TCGA-B8-A54H-01	SBNO1	ENST00000420886.2,ENST00000602398.1	chr12	123825534:123825635:123829804:123830117:123832575:123832680,	123829805	123830117	123829864	123829864	Frame_Shift_Del	T	-	p.N164fs
KIRC	TCGA-B8-A54H-01	SBNO1	ENST00000267176.4,ENST00000602750.1	chr12	123825534:123825635:123829804:123830114:123832575:123832680,	123829805	123830114	123829864	123829864	Frame_Shift_Del	T	-	p.N164fs
KIRC	TCGA-B0-5399-01	SYVN1	ENST00000377190.3	chr11	64897200:64897387:64897473:64897647:64897722:64897761,	64897474	64897647	64897535	64897536	Frame_Shift_Ins	-	C	p.G449fs
KIRC	TCGA-B0-5399-01	SYVN1	ENST00000294256.8,ENST00000527765.1,ENST00000526060.1,ENST00000307289.6	chr11	64897200:64897387:64897473:64897644:64897722:64897761,	64897474	64897644	64897535	64897536	Frame_Shift_Ins	-	C	p.G449fs
KIRC	TCGA-B0-5113-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27301810:27302039:27303422:27303640:27306430:27306721,	27303423	27303640	27303499	27303499	Frame_Shift_Del	T	-	p.T1550fs
KIRC	TCGA-B0-5113-01	REG1B	ENST00000305089.3,ENST00000479258.1	chr2	79313492:79313630:79313937:79314056:79314674:79314784,	79313938	79314056	79314032	79314032	Frame_Shift_Del	G	-	p.P30fs
KIRC	TCGA-B8-4621-01	GALK1	ENST00000592494.1	chr17	73754671:73754680:73758784:73759520:73759977:73760086,	73758785	73759520	73758818	73758818	Frame_Shift_Del	T	-	p.S254fs
KIRC	TCGA-B8-4621-01	THSD4	ENST00000357769.4,ENST00000567745.1	chr15	71839574:71839820:71952868:71953073:72020887:72021063,	71952869	71953073	71952920	71952920	Frame_Shift_Del	G	-	p.C401fs
KIRC	TCGA-B8-4621-01	ATP2B4	ENST00000391954.2,ENST00000367218.3,ENST00000367219.3	chr1	203595927:203596347:203651869:203652526:203667284:203667482,	203651870	203652526	203652386	203652387	Frame_Shift_Del	GT	-	p.18_18del
KIRC	TCGA-B8-4621-01	SLC25A36	ENST00000507429.1,ENST00000324194.6,ENST00000393015.4,ENST00000502594.1	chr3	140660742:140660937:140675368:140675533:140681968:140682069,140660742:140660937:140675368:140675533:140678304:140678382,	140675369	140675533	140675511	140675511	Frame_Shift_Del	C	-	p.S61fs
KIRC	TCGA-B8-4621-01	NKAIN2	ENST00000545433.1,ENST00000368417.1	chr6	124676412:124676493:124979331:124979532:125112484:125112545,	124979332	124979532	124979381	124979381	Frame_Shift_Del	G	-	p.W108fs
KIRC	TCGA-B8-4621-01	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58316765:58316858:58350235:58350368:58358942:58359063,	58350236	58350368	58350342	58350342	Frame_Shift_Del	C	-	p.T217fs
KIRC	TCGA-B8-4621-01	RAD52	ENST00000430095.2	chr12	1040385:1040487:1042140:1042242:1058568:1058685,1040385:1040487:1042140:1042242:1058767:1058792,1040385:1040487:1042140:1042242:1098974:1099219,	1042141	1042242	1042154	1042154	Frame_Shift_Del	A	-	p.L24fs
KIRC	TCGA-B8-4621-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16376309:16376411:16377010:16377095:16377369:16377543,	16377011	16377095	16377066	16377067	Frame_Shift_Ins	-	A	p.P342fs
KIRC	TCGA-B0-4818-01	TCP11L1	ENST00000527661.1,ENST00000334274.4	chr11	33061560:33061752:33065295:33065482:33076138:33076271,33061132:33061338:33065295:33065482:33076138:33076271,	33065296	33065482	33065367	33065367	Frame_Shift_Del	A	-	p.S16X
KIRC	TCGA-B0-4818-01	SS18	ENST00000269137.7,ENST00000539849.1,ENST00000545952.1,ENST00000269138.5,ENST00000585121.1,ENST00000542420.2,ENST00000539244.2,ENST00000579640.1,ENST00000415083.2,ENST00000542743.1,ENST00000585241.1	chr18	23619373:23619420:23632587:23632809:23637552:23637706,	23632588	23632809	23632629	23632629	Frame_Shift_Del	T	-	p.N189fs
KIRC	TCGA-CW-5591-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463038	5463039	Frame_Shift_Ins	-	C	p.E326fs
KIRC	TCGA-CW-5591-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463037	5463038	Frame_Shift_Ins	-	C	p.P327fs
KIRC	TCGA-B0-5698-01	ZNF311	ENST00000377179.3	chr6	28966510:28966615:28967263:28967390:28967732:28967824,	28967264	28967390	28967350	28967350	Frame_Shift_Del	T	-	p.N75fs
KIRC	TCGA-B0-5698-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610584	52610584	Frame_Shift_Del	C	-	p.E1197fs
KIRC	TCGA-DV-5568-01	SLC26A11	ENST00000571602.1	chr17	78195554:78195593:78196453:78196646:78197050:78197071,78195554:78195593:78196453:78196646:78196978:78197054,	78196454	78196646	78196527	78196528	Frame_Shift_Ins	-	C	p.G103fs
KIRC	TCGA-G6-A5PC-01	CLN8	ENST00000331222.4	chr8	1711927:1712051:1719097:1719763:1728415:1728932,	1719098	1719763	1719524	1719539	Frame_Shift_Del	TGGTGCTGGTTTCACA	-	p.101_106del
KIRC	TCGA-G6-A5PC-01	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000272427.6	chr2	72802620:72802797:72945231:72945436:72958135:72958181,	72945232	72945436	72945316	72945316	Frame_Shift_Del	T	-	p.D196fs
KIRC	TCGA-G6-A5PC-01	TRAPPC11	ENST00000357207.4,ENST00000512476.1,ENST00000334690.6	chr4	184606423:184606556:184607770:184607901:184612468:184612624,	184607771	184607901	184607860	184607863	Frame_Shift_Del	CCCA	-	p.617_618del
KIRC	TCGA-BP-5202-01	NIT1	ENST00000496768.1,ENST00000368009.2,ENST00000368008.1,ENST00000496861.1,ENST00000368007.4,ENST00000492411.1,ENST00000392190.5,ENST00000485594.1	chr1	161089298:161089402:161089608:161089742:161089896:161090022,	161089609	161089742	161089670	161089683	Frame_Shift_Del	GCCTATGTGTGAAA	-	p.173_177del
KIRC	TCGA-CJ-4899-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154328	19154329	Frame_Shift_Ins	-	T	p.Q159fs
KIRC	TCGA-B0-5110-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708532	91708532	Frame_Shift_Del	A	-	p.E2362fs
KIRC	TCGA-B0-5110-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53289511:53289691:53296898:53297009:53301205:53301402,	53296899	53297009	53296952	53296952	Frame_Shift_Del	C	-	p.N1421fs
KIRC	TCGA-CZ-5453-01	MID1	ENST00000380779.1,ENST00000380780.1,ENST00000453318.2,ENST00000413894.1,ENST00000317552.4,ENST00000380787.1,ENST00000380782.2,ENST00000380785.1	chrX	10423114:10423117:10427685:10427847:10437736:10437880,	10427686	10427847	10427708	10427708	Frame_Shift_Del	C	-	p.P476fs
KIRC	TCGA-CZ-5453-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52675969:52676061:52677263:52677359:52678719:52678805,	52677264	52677359	52677265	52677265	Frame_Shift_Del	G	-	p.R332fs
KIRC	TCGA-CZ-5453-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181675	154181676	Frame_Shift_Del	TT	-	p.531_532del
KIRC	TCGA-CW-5585-01	XPNPEP1	ENST00000430337.1	chr10	111652769:111652833:111667448:111667573:111674768:111674833,111652769:111652833:111667448:111667573:111683159:111683189,111651479:111651584:111667448:111667573:111683159:111683189,111651479:111651584:111667448:111667573:111674768:111674833,	111667449	111667573	111667520	111667521	Frame_Shift_Ins	-	TT	p.A59fs
KIRC	TCGA-BP-4163-01	CHFR	ENST00000432561.2,ENST00000541837.2,ENST00000315585.7,ENST00000450056.2,ENST00000266880.7,ENST00000443047.2	chr12	133433990:133434145:133435653:133435813:133438052:133438220,	133435654	133435813	133435721	133435722	Frame_Shift_Ins	-	C	p.K294fs
KIRC	TCGA-BP-4163-01	THAP6	ENST00000311638.3,ENST00000507556.1,ENST00000504384.1,ENST00000503831.1,ENST00000380837.3	chr4	76440079:76440201:76440642:76440742:76441981:76441999,76439698:76439730:76440642:76440742:76441981:76441999,	76440643	76440742	76440718	76440721	Frame_Shift_Del	AGTT	-	p.19_20del
KIRC	TCGA-BP-4163-01	FBXO24	ENST00000465843.1,ENST00000241071.6,ENST00000468962.1,ENST00000427939.2,ENST00000360609.2	chr7	100189289:100189525:100190405:100190640:100192005:100192164,	100190406	100190640	100190482	100190483	Frame_Shift_Ins	-	G	p.V250fs
KIRC	TCGA-BP-4974-01	SUPT4H1	ENST00000580947.1,ENST00000225504.3	chr17	56424889:56424945:56428762:56428869:56429427:56429528,	56428763	56428869	56428833	56428833	Frame_Shift_Del	A	-	p.C36fs
KIRC	TCGA-DV-5566-01	CERCAM	ENST00000372838.4	chr9	131182759:131183353:131185146:131185257:131185424:131185542,	131185147	131185257	131185203	131185209	Frame_Shift_Del	CGGCTGT	-	p.85_87del
KIRC	TCGA-B0-5702-01	MTRR	ENST00000510525.1	chr5	7886727:7886816:7889207:7889388:7891484:7891501,7885897:7885967:7889207:7889388:7891484:7891501,	7889208	7889388	7889289	7889290	Frame_Shift_Ins	-	C	p.A437fs
KIRC	TCGA-B0-5702-01	USP15	ENST00000393654.3,ENST00000353364.3	chr12	62719652:62719714:62749111:62749256:62775270:62775414,	62749112	62749256	62749123	62749124	Frame_Shift_Ins	-	T	p.S261fs
KIRC	TCGA-CJ-5684-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99353301:99353546:99365249:99365595:99374352:99374462,	99365250	99365595	99365322	99365322	Frame_Shift_Del	A	-	p.N263fs
KIRC	TCGA-CJ-5684-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99353301:99353546:99365249:99365595:99374352:99374462,	99365250	99365595	99365325	99365326	Frame_Shift_Del	AC	-	p.261_262del
KIRC	TCGA-BP-5192-01	HLA-DRA	ENST00000395388.2	chr6	32410227:32410470:32410961:32411243:32411532:32411698,	32410962	32411243	32410977	32410978	Frame_Shift_Del	CT	-	p.115_115del
KIRC	TCGA-B0-4821-01	RHBDF1	ENST00000262316.6,ENST00000428730.1	chr16	108971:109125:109246:109347:109416:109492,	109247	109347	109300	109301	Frame_Shift_Del	GG	-	p.647_648del
KIRC	TCGA-B0-4821-01	RHBDF1	ENST00000448893.1	chr16	108971:109091:109296:109347:109416:109492,	109297	109347	109300	109301	Frame_Shift_Del	GG	-	p.647_648del
KIRC	TCGA-B0-4821-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21353013:21358058:21361103:21361196:21361619:21361737,	21361104	21361196	21361137	21361138	Frame_Shift_Ins	-	CC	p.G1075fs
KIRC	TCGA-B0-4821-01	SLC25A27	ENST00000371347.5,ENST00000452689.2,ENST00000604616.1,ENST00000604217.1,ENST00000604127.1	chr6	46636445:46636530:46637871:46637964:46638862:46638965,	46637872	46637964	46637908	46637909	Frame_Shift_Ins	-	C	p.T247fs
KIRC	TCGA-B0-4821-01	NLRP9	ENST00000332836.2,ENST00000590200.1	chr19	56235345:56235510:56241196:56241358:56243364:56244916,	56241197	56241358	56241329	56241330	Frame_Shift_Ins	-	CC	p.E621fs
KIRC	TCGA-B0-4821-01	RCAN1	ENST00000399272.1,ENST00000313806.4,ENST00000487990.1,ENST00000489903.1,ENST00000482533.1,ENST00000481448.1,ENST00000381135.3,ENST00000443408.2,ENST00000381132.2	chr21	35888787:35890554:35893796:35893956:35895834:35896008,	35893797	35893956	35893891	35893891	Frame_Shift_Del	A	-	p.P165fs
KIRC	TCGA-B0-5706-01	KDM3B	ENST00000314358.5	chr5	137717204:137717279:137721710:137722310:137726701:137727950,	137721711	137722310	137722186	137722187	Frame_Shift_Ins	-	T	p.A419fs
KIRC	TCGA-B0-5706-01	KDM3B	ENST00000510866.1,ENST00000394866.1	chr5	137721864:137721879:137721977:137722310:137726701:137727950,	137721978	137722310	137722186	137722187	Frame_Shift_Ins	-	T	p.A419fs
KIRC	TCGA-B0-5706-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254423	9254423	Frame_Shift_Del	A	-	p.R386fs
KIRC	TCGA-B0-5706-01	FAM126A	ENST00000409923.1,ENST00000432176.2,ENST00000440481.1	chr7	22999874:23000034:23000853:23000941:23004033:23004150,	23000854	23000941	23000857	23000858	Frame_Shift_Del	CA	-	p.276_277del
KIRC	TCGA-DV-5573-01	NEB	ENST00000397337.2,ENST00000397336.2	chr2	152354139:152354232:152354773:152354866:152355811:152355904,152354139:152354232:152354773:152354866:152357904:152357997,152354139:152354232:152354773:152354866:152359306:152359399,	152354774	152354866	152354836	152354836	Frame_Shift_Del	T	-	p.I8084fs
KIRC	TCGA-DV-5573-01	MMEL1	ENST00000288709.6,ENST00000504800.1,ENST00000378412.3,ENST00000502556.1	chr1	2522364:2522528:2522995:2523072:2523370:2523466,	2522996	2523072	2523042	2523048	Frame_Shift_Del	CGAACTC	-	p.730_732del
KIRC	TCGA-DV-5573-01	EDC3	ENST00000565602.1	chr15	74964002:74964115:74967301:74967483:74979431:74979520,74948360:74948409:74967301:74967483:74988220:74988281,	74967302	74967483	74967445	74967446	Frame_Shift_Ins	-	C	p.G7fs
KIRC	TCGA-BP-4782-01	UNK	ENST00000293218.3,ENST00000589666.1	chr17	73815819:73815866:73816000:73816189:73818557:73818739,	73816001	73816189	73816152	73816152	Frame_Shift_Del	C	-	p.N600fs
KIRC	TCGA-BP-4782-01	RAB8A	ENST00000590899.1,ENST00000586682.1,ENST00000589697.1,ENST00000587156.1	chr19	16222724:16222835:16229035:16229096:16232559:16232620,	16229036	16229096	16229096	16229096	Frame_Shift_Del	G	-	p.W62fs
KIRC	TCGA-BP-4782-01	ALG13	ENST00000394780.3,ENST00000251943.4,ENST00000495283.1	chrX	110928198:110928331:110951254:110951621:110952192:110952257,	110951255	110951621	110951455	110951455	Frame_Shift_Del	T	-	p.L195fs
KIRC	TCGA-CZ-5467-01	TRAF6	ENST00000529150.1,ENST00000348124.5,ENST00000526995.1	chr11	36511926:36512200:36514100:36514178:36516525:36516597,	36514101	36514178	36514141	36514141	Frame_Shift_Del	G	-	p.P239fs
KIRC	TCGA-CZ-5467-01	PEX5	ENST00000434354.2	chr12	7342302:7342346:7342957:7343165:7343483:7343519,	7342958	7343165	7343147	7343151	Frame_Shift_Del	AGGTG	-	p.58_59del
KIRC	TCGA-AK-3451-01	GEMIN5	ENST00000285873.7	chr5	154284922:154285036:154287150:154287378:154291286:154291458,	154287151	154287378	154287300	154287300	Frame_Shift_Del	A	-	p.L749fs
KIRC	TCGA-AK-3451-01	PEX5	ENST00000434354.2	chr12	7342302:7342346:7342957:7343165:7343483:7343519,	7342958	7343165	7343152	7343153	Frame_Shift_Del	CA	-	p.60_60del
KIRC	TCGA-CJ-6031-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40706515:40706710:40707773:40707975:40709013:40709102,40704232:40704451:40707773:40707975:40709013:40709102,	40707774	40707975	40707829	40707829	Frame_Shift_Del	A	-	p.E1531fs
KIRC	TCGA-CJ-6031-01	SLC25A13	ENST00000416240.2,ENST00000265631.5,ENST00000542654.1	chr7	95818605:95818690:95818892:95818986:95820420:95820549,	95818893	95818986	95818964	95818965	Frame_Shift_Ins	-	T	p.Q259fs
KIRC	TCGA-EU-5904-01	NCAPG	ENST00000251496.2	chr4	17816896:17816981:17818883:17819076:17819561:17819711,	17818884	17819076	17819025	17819026	Frame_Shift_Ins	-	AA	p.S306fs
KIRC	TCGA-EU-5904-01	PPP1R12A	ENST00000437004.2	chr12	80175594:80175642:80182427:80182563:80184246:80184263,	80182428	80182563	80182470	80182471	Frame_Shift_Ins	-	T	p.Y920_S921delinsX
KIRC	TCGA-B0-5077-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919663	57919663	Frame_Shift_Del	G	-	p.L304fs
KIRC	TCGA-A3-3308-01	CDH6	ENST00000514738.1,ENST00000265071.2	chr5	31302217:31302405:31305280:31305534:31313424:31313561,	31305281	31305534	31305299	31305302	Frame_Shift_Del	AAGA	-	p.339_340del
KIRC	TCGA-A3-3308-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125805	47125805	Frame_Shift_Del	G	-	p.P1822fs
KIRC	TCGA-A3-3308-01	SULT2A1	ENST00000222002.3	chr19	48382292:48382387:48385340:48385467:48386833:48387042,	48385341	48385467	48385414	48385415	Frame_Shift_Ins	-	A	p.F133fs
KIRC	TCGA-A3-3308-01	SYCP2L	ENST00000283141.6,ENST00000341041.4	chr6	10942909:10942979:10955348:10955450:10956368:10956475,	10955349	10955450	10955449	10955449	Frame_Shift_Del	A	-	p.P685fs
KIRC	TCGA-A3-3308-01	ZSCAN2	ENST00000540894.1	chr15	85147131:85147564:85163832:85165945:85166506:85166867,	85163833	85165945	85164518	85164519	Frame_Shift_Ins	-	A	p.C364fs
KIRC	TCGA-CZ-5463-01	SLC34A1	ENST00000324417.5	chr5	176814994:176815190:176815277:176815373:176820694:176820764,	176815278	176815373	176815364	176815365	Frame_Shift_Ins	-	T	p.D309fs
KIRC	TCGA-CZ-5463-01	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871057	871060	Frame_Shift_Del	CAGG	-	p.477_478del
KIRC	TCGA-CZ-5463-01	MAX	ENST00000284165.6,ENST00000557277.1,ENST00000556979.1,ENST00000553928.1,ENST00000394606.2,ENST00000553951.1,ENST00000358664.4	chr14	65544630:65544754:65560425:65560533:65568263:65568290,	65560426	65560533	65560495	65560495	Frame_Shift_Del	T	-	p.R35fs
KIRC	TCGA-B8-5550-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000447066.2	chr16	74505070:74505184:74506246:74506309:74508443:74508530,	74506247	74506309	74506300	74506300	Frame_Shift_Del	T	-	p.I688fs
KIRC	TCGA-B8-5550-01	TEKT1	ENST00000338694.2	chr17	6719152:6719281:6733505:6733712:6734967:6735025,6722511:6722677:6733505:6733712:6734967:6735025,	6733506	6733712	6733567	6733568	Frame_Shift_Ins	-	CTCT	p.R43fs
KIRC	TCGA-B8-5550-01	TARS2	ENST00000438568.2,ENST00000369064.3	chr1	150469285:150469384:150470005:150470223:150470977:150471140,	150470006	150470223	150470153	150470157	Frame_Shift_Del	CAGAG	-	p.389_391del
KIRC	TCGA-B8-5550-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64779745	64779769	Frame_Shift_Del	AGTTGGTTCTCCCAAAGAAGAAAGT	-	p.379_387del
KIRC	TCGA-B8-5550-01	ANKH	ENST00000284268.6,ENST00000503939.1	chr5	14749280:14749415:14751177:14751348:14755969:14755997,	14751178	14751348	14751223	14751226	Frame_Shift_Del	CTTG	-	p.214_215del
KIRC	TCGA-B8-5550-01	ABCC3	ENST00000510891.1,ENST00000513745.1,ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48752991:48753136:48753243:48753451:48753638:48753650,	48753244	48753451	48753328	48753329	Frame_Shift_Ins	-	G	p.S982fs
KIRC	TCGA-B0-4811-01	RRP8	ENST00000533907.1	chr11	6622483:6622832:6623081:6623445:6624633:6624809,	6623082	6623445	6623337	6623337	Frame_Shift_Del	C	-	p.E70fs
KIRC	TCGA-B0-4811-01	RRP8	ENST00000530762.1	chr11	6622483:6622832:6623081:6623494:6624633:6624809,	6623082	6623494	6623337	6623337	Frame_Shift_Del	C	-	p.E70fs
KIRC	TCGA-B0-4811-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70806530	70806531	Frame_Shift_Ins	-	AG	p.E1204fs
KIRC	TCGA-B0-4811-01	RRP8	ENST00000533907.1	chr11	6622483:6622832:6623081:6623445:6624633:6624809,	6623082	6623445	6623308	6623308	Frame_Shift_Del	T	-	p.S80fs
KIRC	TCGA-B0-4811-01	RRP8	ENST00000530762.1	chr11	6622483:6622832:6623081:6623494:6624633:6624809,	6623082	6623494	6623308	6623308	Frame_Shift_Del	T	-	p.S80fs
KIRC	TCGA-B0-4811-01	RRP8	ENST00000533907.1	chr11	6622483:6622832:6623081:6623445:6624633:6624809,	6623082	6623445	6623343	6623344	Frame_Shift_Del	CC	-	p.68_68del
KIRC	TCGA-B0-4811-01	RRP8	ENST00000530762.1	chr11	6622483:6622832:6623081:6623494:6624633:6624809,	6623082	6623494	6623343	6623344	Frame_Shift_Del	CC	-	p.68_68del
KIRC	TCGA-B0-4811-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70806528	70806529	Frame_Shift_Ins	-	G	p.T1203fs
KIRC	TCGA-B0-4811-01	ALPK3	ENST00000558077.1,ENST00000258888.5	chr15	85406782:85406871:85407672:85407896:85410547:85410596,	85407673	85407896	85407697	85407697	Frame_Shift_Del	C	-	p.Y1710fs
KIRC	TCGA-B0-4811-01	PAPOLG	ENST00000238714.3,ENST00000414060.1,ENST00000453839.1	chr2	61021105:61021326:61021844:61021910:61022098:61022155,	61021845	61021910	61021866	61021866	Frame_Shift_Del	T	-	p.T670fs
KIRC	TCGA-B0-4811-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47125209:47125872:47127684:47127804:47129602:47129737,	47127685	47127804	47127749	47127749	Frame_Shift_Del	A	-	p.L1778fs
KIRC	TCGA-BP-5199-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967277	64967280	Frame_Shift_Del	GAAA	-	p.741_742del
KIRC	TCGA-BP-5199-01	PPP2R1B	ENST00000534521.1,ENST00000531890.1,ENST00000427203.2,ENST00000311129.5,ENST00000426998.2,ENST00000393055.2,ENST00000527614.1	chr11	111622882:111623056:111624166:111624301:111625222:111625293,	111624167	111624301	111624250	111624251	Frame_Shift_Del	TT	-	p.361_361del
KIRC	TCGA-A3-3326-01	RPL10A	ENST00000467020.1	chr6	35436578:35436650:35436723:35437306:35437955:35438128,	35436724	35437306	35437244	35437247	Frame_Shift_Del	CCCA	-	p.83_84del
KIRC	TCGA-A3-3326-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000464112.1	chr6	35436723:35436804:35437157:35437306:35437955:35438128,	35437158	35437306	35437244	35437247	Frame_Shift_Del	CCCA	-	p.83_84del
KIRC	TCGA-B2-3924-01	VIL1	ENST00000248444.5,ENST00000392114.2,ENST00000419986.1	chr2	219297520:219297674:219299248:219299428:219300011:219300157,	219299249	219299428	219299338	219299339	Frame_Shift_Ins	-	T	p.A530fs
KIRC	TCGA-B2-3924-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000466653.1,ENST00000264183.3,ENST00000418304.1,ENST00000491632.1	chr1	235418974:235419065:235420474:235420540:235423956:235424067,	235420475	235420540	235420512	235420512	Frame_Shift_Del	A	-	p.V49fs
KIRC	TCGA-B2-3924-01	PTPRG	ENST00000475012.1,ENST00000474889.1,ENST00000295874.10	chr3	62267237:62267384:62268401:62268544:62278095:62278231,	62268402	62268544	62268432	62268432	Frame_Shift_Del	C	-	p.F1314fs
KIRC	TCGA-B2-3924-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554288.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53347961:53348187:53360010:53360145:53385840:53386057,	53360011	53360145	53360082	53360082	Frame_Shift_Del	T	-	p.K152fs
KIRC	TCGA-B2-3924-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19290755:19290874:19296005:19296244:19298053:19298120,	19296006	19296244	19296164	19296164	Frame_Shift_Del	T	-	p.P320fs
KIRC	TCGA-B2-3924-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913974	129913974	Frame_Shift_Del	T	-	p.N233fs
KIRC	TCGA-B2-3924-01	MTIF2	ENST00000394600.3,ENST00000263629.4,ENST00000403721.1	chr2	55463757:55463956:55464423:55464564:55467146:55467281,	55464424	55464564	55464461	55464461	Frame_Shift_Del	T	-	p.F659fs
KIRC	TCGA-B2-3924-01	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505302	56505302	Frame_Shift_Del	A	-	p.K369fs
KIRC	TCGA-B2-3924-01	PUS7	ENST00000481939.1,ENST00000356362.2,ENST00000469408.1	chr7	105121498:105121624:105122758:105122887:105131986:105132064,	105122759	105122887	105122810	105122810	Frame_Shift_Del	T	-	p.N333fs
KIRC	TCGA-B2-3924-01	LARP1B	ENST00000326639.6,ENST00000503725.1,ENST00000264584.5,ENST00000507259.1,ENST00000354456.3,ENST00000506199.1	chr4	129121748:129121820:129127582:129127692:129128410:129128538,	129127583	129127692	129127627	129127627	Frame_Shift_Del	A	-	p.E785fs
KIRC	TCGA-B2-3924-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422305	229422305	Frame_Shift_Del	A	-	p.E35fs
KIRC	TCGA-B2-3924-01	C4BPB	ENST00000492730.1	chr1	207262238:207262291:207262826:207262934:207263652:207263826,	207262827	207262934	207262880	207262880	Frame_Shift_Del	T	-	p.M1fs
KIRC	TCGA-CZ-5454-01	ARG1	ENST00000275196.5,ENST00000356962.2,ENST00000368087.3	chr6	131903760:131903855:131904199:131904304:131904494:131904538,	131904200	131904304	131904255	131904256	Frame_Shift_Ins	-	T	p.L214fs
KIRC	TCGA-CJ-6032-01	TYR	ENST00000263321.5	chr11	88960990:88961138:89017940:89018122:89028310:89028476,	89017941	89018122	89017963	89017964	Frame_Shift_Ins	-	G	p.R403fs
KIRC	TCGA-CJ-6032-01	HMGN2	ENST00000464888.1	chr1	26799009:26799118:26799973:26800223:26800575:26800619,	26799974	26800223	26799998	26799998	Frame_Shift_Del	A	-	p.D13fs
KIRC	TCGA-CJ-6032-01	HMGN2	ENST00000463817.1	chr1	26799090:26799118:26799973:26800076:26800193:26800223,	26799974	26800076	26799998	26799998	Frame_Shift_Del	A	-	p.D13fs
KIRC	TCGA-CJ-6032-01	HMGN2	ENST00000467700.1,ENST00000361427.5,ENST00000460563.1	chr1	26799090:26799118:26799973:26800018:26800193:26800223,	26799974	26800018	26799998	26799998	Frame_Shift_Del	A	-	p.D13fs
KIRC	TCGA-BP-5170-01	IL12RB2	ENST00000541374.1,ENST00000371000.1,ENST00000262345.1	chr1	67838307:67838466:67845668:67845806:67852261:67852352,	67845669	67845806	67845752	67845761	Frame_Shift_Del	CTGACAGCTG	-	p.600_603del
KIRC	TCGA-B0-5104-01	EXOSC9	ENST00000511454.1,ENST00000379663.3,ENST00000511132.1,ENST00000503139.1,ENST00000509800.1,ENST00000512454.1,ENST00000243498.5,ENST00000509980.1	chr4	122728694:122728777:122731121:122731254:122732737:122732796,	122731122	122731254	122731151	122731151	Frame_Shift_Del	G	-	p.R212fs
KIRC	TCGA-B0-5104-01	EXOSC9	ENST00000513654.1	chr4	122728694:122728777:122731121:122731228:122732737:122732826,	122731122	122731228	122731151	122731151	Frame_Shift_Del	G	-	p.R212fs
KIRC	TCGA-CJ-5689-01	KIF1A	ENST00000320389.7,ENST00000492812.1,ENST00000498729.2,ENST00000460788.1	chr2	241657466:241657585:241658422:241658615:241659190:241659343,	241658423	241658615	241658613	241658613	Frame_Shift_Del	G	-	p.P1675fs
KIRC	TCGA-CZ-4864-01	ARHGAP25	ENST00000463483.1,ENST00000491237.1,ENST00000544262.1	chr2	68962240:68962392:69002352:69002552:69009364:69009418,68937636:68937830:69002352:69002552:69009364:69009418,	69002353	69002552	69002505	69002506	Frame_Shift_Del	GC	-	p.71_72del
KIRC	TCGA-CZ-4864-01	TPD52L2	ENST00000217121.5,ENST00000352482.4,ENST00000346249.4	chr20	62500717:62500794:62505020:62505169:62514071:62514173,62500717:62500794:62505020:62505169:62507168:62507228,	62505021	62505169	62505087	62505087	Frame_Shift_Del	A	-	p.L77fs
KIRC	TCGA-CZ-4864-01	SF3B3	ENST00000302516.5,ENST00000572365.1	chr16	70573006:70573110:70575571:70575737:70578340:70578436,	70575572	70575737	70575603	70575604	Frame_Shift_Ins	-	AT	p.D367fs
KIRC	TCGA-B0-5108-01	EIF2B3	ENST00000372183.3,ENST00000360403.2,ENST00000439363.1	chr1	45345489:45345680:45347283:45347411:45363026:45363116,	45347284	45347411	45347334	45347334	Frame_Shift_Del	C	-	p.G245fs
KIRC	TCGA-B0-5108-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3,ENST00000497100.1	chrX	53228158:53228340:53230731:53230926:53231035:53231155,	53230732	53230926	53230876	53230877	Frame_Shift_Ins	-	T	p.Y639_C640delinsX
KIRC	TCGA-B0-5108-01	NTRK1	ENST00000368196.3,ENST00000524377.1,ENST00000534682.1,ENST00000497019.2,ENST00000392302.2	chr1	156844697:156844800:156845311:156845458:156845871:156845991,	156845312	156845458	156845351	156845351	Frame_Shift_Del	C	-	p.S465fs
KIRC	TCGA-B0-5108-01	NTRK1	ENST00000530298.1	chr1	156844697:156844800:156845311:156846002:156846191:156846364,	156845312	156846002	156845351	156845351	Frame_Shift_Del	C	-	p.S465fs
KIRC	TCGA-B4-5377-01	MED12L	ENST00000488092.1	chr3	151112443:151112655:151134099:151134210:151148086:151148168,	151134100	151134210	151134124	151134124	Frame_Shift_Del	C	-	p.Q2072fs
KIRC	TCGA-B4-5377-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609030	179609030	Frame_Shift_Del	T	-	p.I526fs
KIRC	TCGA-B4-5377-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68855903:68856128:68857301:68857529:68862076:68862207,	68857302	68857529	68857486	68857487	Frame_Shift_Ins	-	C	p.I707fs
KIRC	TCGA-CJ-4918-01	RABGAP1L	ENST00000347255.2,ENST00000251507.4,ENST00000325589.5,ENST00000367687.1	chr1	174721450:174721492:174780969:174781098:174926593:174926686,	174780970	174781098	174781011	174781011	Frame_Shift_Del	T	-	p.A751fs
KIRC	TCGA-CJ-4918-01	HUS1	ENST00000258774.5,ENST00000458191.1,ENST00000432325.1,ENST00000436444.1	chr7	48007402:48007522:48008815:48008915:48015209:48015284,	48008816	48008915	48008881	48008881	Frame_Shift_Del	A	-	p.L192fs
KIRC	TCGA-DV-5567-01	UBE2D1	ENST00000373910.4	chr10	60121097:60121161:60121254:60121286:60123368:60123387,	60121255	60121286	60121253	60121282	Frame_Shift_Del	CTCCTTTGTTTGTTTCAGTGTTCCACTGGC	-	p.30_33del
KIRC	TCGA-DV-5567-01	ST8SIA1	ENST00000541868.1,ENST00000540824.1,ENST00000396037.4,ENST00000545524.1	chr12	22401939:22402032:22408213:22408323:22421445:22421539,22401939:22402032:22408213:22408323:22440082:22440128,	22408214	22408323	22408249	22408250	Frame_Shift_Ins	-	C	p.C152fs
KIRC	TCGA-B8-4148-01	ANKRD27	ENST00000588700.1,ENST00000586693.3,ENST00000587352.1	chr19	33140587:33140698:33149819:33149951:33165976:33166053,	33149820	33149951	33149837	33149841	Frame_Shift_Del	CCACT	-	p.28_29del
KIRC	TCGA-BP-4991-01	DSTYK	ENST00000367162.3,ENST00000367161.3	chr1	205128674:205128807:205129241:205129398:205130385:205130515,	205129242	205129398	205129247	205129247	Frame_Shift_Del	A	-	p.M701X
KIRC	TCGA-BP-4801-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108138066:108138069:108139136:108139336:108141790:108141873,	108139137	108139336	108139152	108139155	Frame_Shift_Del	TAGC	-	p.885_886del
KIRC	TCGA-MM-A564-01	AP1G2	ENST00000465445.2,ENST00000554554.1,ENST00000397120.3,ENST00000308724.5,ENST00000535852.2,ENST00000554477.1,ENST00000460049.2	chr14	24029463:24029627:24030504:24030640:24030720:24030844,	24030505	24030640	24030507	24030508	Frame_Shift_Del	GG	-	p.664_664del
KIRC	TCGA-MM-A564-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53225097:53225236:53225867:53226226:53226952:53227058,	53225868	53226226	53226193	53226193	Frame_Shift_Del	C	-	p.E886fs
KIRC	TCGA-BP-5169-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39587067	39587067	Frame_Shift_Del	G	-	p.S775fs
KIRC	TCGA-BP-5190-01	EMILIN1	ENST00000433140.1,ENST00000380320.4	chr2	27307858:27307876:27308027:27308165:27308545:27309271,	27308028	27308165	27308027	27308032	Frame_Shift_Del	GGAGTG	-	p.859_860del
KIRC	TCGA-A3-3373-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1	chr2	10808783:10808849:10811679:10811816:10813645:10813683,	10811680	10811816	10811743	10811743	Frame_Shift_Del	G	-	p.P134fs
KIRC	TCGA-EU-5906-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134233012	134233013	Frame_Shift_Del	TG	-	p.179_180del
KIRC	TCGA-CJ-4905-01	ANKRD29	ENST00000586087.1,ENST00000322980.9	chr18	21226152:21226251:21229046:21229157:21242673:21242736,	21229047	21229157	21229082	21229083	Frame_Shift_Ins	-	A	p.N33_S34delinsX
KIRC	TCGA-DV-5574-01	PNP	ENST00000361505.5,ENST00000557229.1,ENST00000553418.1,ENST00000554056.1	chr14	20937572:20937694:20940466:20940636:20942630:20942730,	20940467	20940636	20940614	20940614	Frame_Shift_Del	C	-	p.I53fs
KIRC	TCGA-A3-3383-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702569	52702569	Frame_Shift_Del	T	-	p.N110fs
KIRC	TCGA-A3-A8OW-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078929	170078930	Frame_Shift_Ins	-	A	p.G270fs
KIRC	TCGA-A3-A8OW-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678745	52678746	Frame_Shift_Del	TT	-	p.292_292del
KIRC	TCGA-A3-3322-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844479	123844479	Frame_Shift_Del	C	-	p.W821fs
KIRC	TCGA-A3-3322-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610585	52610585	Frame_Shift_Del	T	-	p.E1197fs
KIRC	TCGA-A3-3349-01	SCPEP1	ENST00000575395.1,ENST00000572591.1,ENST00000575423.1,ENST00000576154.1,ENST00000262288.3,ENST00000570589.1,ENST00000573789.1	chr17	55068459:55068532:55072341:55072379:55072867:55072905,	55072342	55072379	55072362	55072362	Frame_Shift_Del	C	-	p.G213fs
KIRC	TCGA-A3-3349-01	STRN4	ENST00000435164.2	chr19	47231163:47231264:47231874:47232034:47233988:47234114,47231150:47231383:47231874:47232034:47233988:47234114,	47231875	47232034	47231888	47231889	Frame_Shift_Ins	-	C	p.S342fs
KIRC	TCGA-A3-3349-01	AFTPH	ENST00000422803.1,ENST00000409183.1,ENST00000409933.1,ENST00000238855.7	chr2	64806619:64806680:64808323:64808407:64812555:64812679,	64808324	64808407	64808374	64808374	Frame_Shift_Del	G	-	p.D835fs
KIRC	TCGA-A3-3349-01	AFTPH	ENST00000498706.1	chr2	64800079:64800202:64806619:64808407:64812555:64812679,	64806620	64808407	64808374	64808374	Frame_Shift_Del	G	-	p.D835fs
KIRC	TCGA-CJ-4912-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188204	10188204	Frame_Shift_Del	T	-	p.L116fs
KIRC	TCGA-CJ-4902-01	AGRN	ENST00000379370.2	chr1	978917:979112:979202:979403:979488:979637,	979203	979403	979247	979251	Frame_Shift_Del	GCAGG	-	p.614_616del
KIRC	TCGA-CJ-4902-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877232	38877235	Frame_Shift_Del	TCTA	-	p.122_123del
KIRC	TCGA-B8-A54E-01	GLB1	ENST00000399402.3,ENST00000307363.5,ENST00000445488.2,ENST00000464355.1	chr3	33109721:33109782:33110311:33110462:33114035:33114205,	33110312	33110462	33110387	33110387	Frame_Shift_Del	A	-	p.L108fs
KIRC	TCGA-CZ-5986-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52685779:52685826:52692214:52692331:52696148:52696292,	52692215	52692331	52692236	52692236	Frame_Shift_Del	A	-	p.Q209fs
KIRC	TCGA-B8-5551-01	COQ10A	ENST00000546544.1,ENST00000433805.2,ENST00000308197.5	chr12	56661583:56661724:56662842:56663035:56663243:56663345,	56662843	56663035	56662982	56662982	Frame_Shift_Del	G	-	p.P140fs
KIRC	TCGA-B8-5551-01	SUN1	ENST00000457598.1,ENST00000403868.1,ENST00000456758.2,ENST00000421580.1,ENST00000405266.1,ENST00000457378.2,ENST00000413171.2,ENST00000467483.1,ENST00000439679.1,ENST00000435699.1,ENST00000340926.3,ENST00000452783.2,ENST00000401592.1,ENST00000425407.2,ENST00000450538.1	chr7	856279:856310:878434:878623:881582:881656,872143:872238:878434:878623:881582:881656,	878435	878623	878492	878496	Frame_Shift_Del	ATTTG	-	p.66_67del
KIRC	TCGA-B8-5551-01	USP28	ENST00000537490.1,ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000535607.1,ENST00000537706.1	chr11	113688552:113688559:113694326:113694422:113697954:113698082,	113694327	113694422	113694390	113694391	Frame_Shift_Del	TT	-	p.407_407del
KIRC	TCGA-B8-5551-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167943782:167943955:167944819:167945067:167946085:167946303,	167944820	167945067	167945006	167945006	Frame_Shift_Del	G	-	p.L604fs
KIRC	TCGA-CZ-5466-01	SUMF2	ENST00000413952.2,ENST00000434526.2,ENST00000395436.2,ENST00000452216.1,ENST00000275607.9,ENST00000413756.1,ENST00000342190.6,ENST00000451338.1	chr7	56141866:56141911:56144526:56144582:56145794:56145879,56140701:56140804:56144526:56144582:56145794:56145879,56136174:56136331:56144526:56144582:56145794:56145879,56142278:56142429:56144526:56144582:56145794:56145879,	56144527	56144582	56144554	56144555	Frame_Shift_Ins	-	C	p.F207fs
KIRC	TCGA-CZ-5466-01	C4orf47	ENST00000508698.1,ENST00000378850.4	chr4	186361693:186361873:186366117:186366284:186370749:186370822,	186366118	186366284	186366122	186366123	Frame_Shift_Del	GT	-	p.240_240del
KIRC	TCGA-CZ-5466-01	ARL6IP6	ENST00000463690.1,ENST00000495469.1,ENST00000326446.5,ENST00000425034.1	chr2	153577046:153577100:153591507:153591640:153616260:153616365,	153591508	153591640	153591619	153591620	Frame_Shift_Del	CT	-	p.189_189del
KIRC	TCGA-CZ-5466-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84744946:84745175:84752688:84752862:84756027:84756290,	84752689	84752862	84752850	84752851	Frame_Shift_Ins	-	A	p.V129fs
KIRC	TCGA-CZ-5465-01	RFX8	ENST00000481179.1,ENST00000376826.2,ENST00000428343.1	chr2	102013865:102014186:102018897:102019214:102022404:102022519,	102018898	102019214	102019046	102019047	Frame_Shift_Ins	-	A	p.S366fs
KIRC	TCGA-CZ-5465-01	SCRN1	ENST00000242059.5,ENST00000409497.1,ENST00000434476.2,ENST00000426154.1,ENST00000425819.2	chr7	29976171:29976337:29980297:29980492:29983592:29983795,	29980298	29980492	29980329	29980330	Frame_Shift_Ins	-	C	p.G256fs
KIRC	TCGA-CZ-5465-01	MIOX	ENST00000451761.1,ENST00000395732.3,ENST00000216075.6	chr22	50927661:50927724:50927825:50927875:50927960:50928059,	50927826	50927875	50927866	50927867	Frame_Shift_Ins	-	C	p.L209fs
KIRC	TCGA-CZ-5465-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75513395	75513396	Frame_Shift_Ins	-	AT	p.I988fs
KIRC	TCGA-CZ-5465-01	MSMO1	ENST00000504317.1	chr4	166248818:166249098:166254491:166254777:166258940:166259089,166248872:166248916:166254491:166254777:166258940:166259089,	166254492	166254777	166254730	166254730	Frame_Shift_Del	T	-	p.G69fs
KIRC	TCGA-CZ-5465-01	PPP6R1	ENST00000591323.1,ENST00000412770.2,ENST00000587283.1	chr19	55751603:55751668:55752312:55752447:55752606:55752759,	55752313	55752447	55752433	55752436	Frame_Shift_Del	ATGG	-	p.392_393del
KIRC	TCGA-B0-4698-01	SLC5A5	ENST00000222248.3	chr19	17986760:17986915:17988531:17988672:17988772:17988902,	17988532	17988672	17988546	17988547	Frame_Shift_Ins	-	G	p.P238fs
KIRC	TCGA-B0-4698-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450127	29450127	Frame_Shift_Del	C	-	p.S180fs
KIRC	TCGA-B0-4698-01	SLC25A3	ENST00000547534.1,ENST00000548847.1,ENST00000401722.3,ENST00000552981.1,ENST00000188376.5,ENST00000549338.1	chr12	98987756:98987913:98989504:98989626:98991633:98991812,	98989505	98989626	98989568	98989569	Frame_Shift_Ins	-	T	p.S74fs
KIRC	TCGA-B0-4698-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766941	53766941	Frame_Shift_Del	C	-	p.A878fs
KIRC	TCGA-B0-4698-01	NDUFA4L2	ENST00000393825.1	chr12	57630375:57630464:57630811:57631118:57634461:57634475,	57630812	57631118	57630860	57630861	Frame_Shift_Ins	-	CC	p.G3fs
KIRC	TCGA-B0-4698-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20483103:20483247:20490412:20490551:20494136:20494279,	20490413	20490551	20490469	20490470	Frame_Shift_Ins	-	C	p.A412fs
KIRC	TCGA-CJ-6030-01	RBM39	ENST00000403542.2,ENST00000253363.6,ENST00000494274.1,ENST00000429968.1,ENST00000361162.6,ENST00000461283.1,ENST00000463004.1,ENST00000492779.1,ENST00000528062.3,ENST00000444878.1,ENST00000490484.2,ENST00000407261.4,ENST00000338163.6	chr20	34304661:34304727:34309661:34309799:34312491:34312644,	34309662	34309799	34309720	34309720	Frame_Shift_Del	G	-	p.S256fs
KIRC	TCGA-CJ-6030-01	DHPS	ENST00000210060.7,ENST00000594424.1,ENST00000595844.1,ENST00000351660.5,ENST00000595912.1,ENST00000596162.1,ENST00000601639.1,ENST00000597152.1,ENST00000598850.1,ENST00000601537.1	chr19	12788141:12788210:12790270:12790357:12790436:12790533,	12790271	12790357	12790293	12790302	Frame_Shift_Del	GACTCTGGGT	-	p.216_219del
KIRC	TCGA-CJ-6030-01	MED13	ENST00000397786.2	chr17	60050087:60050249:60059558:60060475:60061531:60061728,	60059559	60060475	60059957	60059957	Frame_Shift_Del	T	-	p.N1136fs
KIRC	TCGA-CJ-5680-01	MRPS33	ENST00000324787.5	chr7	140705968:140706335:140710218:140710460:140714151:140714229,140705968:140706335:140710218:140710460:140714710:140714749,	140710219	140710460	140710333	140710333	Frame_Shift_Del	A	-	p.V34fs
KIRC	TCGA-CJ-5680-01	MRPS33	ENST00000467334.1	chr7	140705968:140706335:140710218:140710417:140714710:140714749,	140710219	140710417	140710333	140710333	Frame_Shift_Del	A	-	p.V34fs
KIRC	TCGA-CJ-5680-01	BAP1	ENST00000470173.1,ENST00000296288.5,ENST00000460680.1,ENST00000483984.1	chr3	52441973:52442093:52442489:52442622:52443569:52443624,	52442490	52442622	52442523	52442523	Frame_Shift_Del	A	-	p.D75fs
KIRC	TCGA-BP-5186-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188320	10188324	Frame_Shift_Del	GGTAC	-	p.154_155del
KIRC	TCGA-A3-3387-01	MANSC1	ENST00000396349.3,ENST00000535902.1	chr12	12482646:12483892:12491353:12491494:12496025:12496107,	12491354	12491494	12491487	12491487	Frame_Shift_Del	T	-	p.A78fs
KIRC	TCGA-CJ-6027-01	AVL9	ENST00000404479.1,ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32582866:32582873:32584305:32584391:32588458:32588530,	32584306	32584391	32584314	32584314	Frame_Shift_Del	T	-	p.V74fs
KIRC	TCGA-CJ-6027-01	YIF1A	ENST00000471387.2,ENST00000526497.1,ENST00000376901.4	chr11	66052393:66052437:66052851:66053007:66053171:66053229,	66052852	66053007	66052992	66052996	Frame_Shift_Del	CACCT	-	p.166_168del
KIRC	TCGA-CJ-4882-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125260	47125260	Frame_Shift_Del	C	-	p.D2004fs
KIRC	TCGA-B0-5080-01	CTSZ	ENST00000217131.5	chr20	57570727:57570814:57571693:57571856:57572657:57572808,	57571694	57571856	57571753	57571753	Frame_Shift_Del	A	-	p.W248fs
KIRC	TCGA-B0-5080-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439206	52439206	Frame_Shift_Del	C	-	p.V346fs
KIRC	TCGA-B2-5639-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38302550:38302733:38308748:38309692:38311131:38311294,	38308749	38309692	38309266	38309266	Frame_Shift_Del	T	-	p.K160fs
KIRC	TCGA-B2-5639-01	TENM4	ENST00000278550.7	chr11	78372493:78372636:78379981:78381596:78383077:78383374,	78379982	78381596	78380763	78380766	Frame_Shift_Del	GTCA	-	p.2209_2210del
KIRC	TCGA-B2-5639-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467002:136467106:136467628:136467801:136473119:136473264,	136467629	136467801	136467724	136467724	Frame_Shift_Del	A	-	p.W851X
KIRC	TCGA-B2-5639-01	RBM33	ENST00000392761.3,ENST00000401878.3	chr7	155530753:155531097:155532408:155532720:155534512:155534800,	155532409	155532720	155532435	155532436	Frame_Shift_Ins	-	C	p.P588fs
KIRC	TCGA-BP-5004-01	SFMBT1	ENST00000358080.2,ENST00000394752.3,ENST00000394750.1	chr3	52938627:52939292:52940128:52940257:52941084:52941330,	52940129	52940257	52940142	52940142	Frame_Shift_Del	A	-	p.I816fs
KIRC	TCGA-BP-5004-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3,ENST00000411772.1	chr15	43720213:43720366:43724391:43724875:43730521:43730605,	43724392	43724875	43724668	43724668	Frame_Shift_Del	C	-	p.K1134fs
KIRC	TCGA-B0-5106-01	NT5C2	ENST00000461461.1,ENST00000452156.1	chr10	104899162:104899236:104934614:104934739:104952992:104953029,	104934615	104934739	104934672	104934673	Frame_Shift_Del	AT	-	p.15_15del
KIRC	TCGA-B0-4710-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1927018	1927018	Frame_Shift_Del	A	-	p.C175fs
KIRC	TCGA-B0-4710-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1927018	1927018	Frame_Shift_Del	A	-	p.C175fs
KIRC	TCGA-B0-4710-01	ULK3	ENST00000564029.1	chr15	75134415:75134536:75134620:75134758:75135344:75135465,	75134621	75134758	75134624	75134624	Frame_Shift_Del	A	-	p.Q81fs
KIRC	TCGA-B0-4710-01	ULK3	ENST00000566479.1,ENST00000561725.1,ENST00000565881.1,ENST00000563301.1,ENST00000570276.1,ENST00000569437.1	chr15	75134415:75134459:75134620:75134761:75135344:75135465,75134415:75134536:75134620:75134761:75135344:75135465,	75134621	75134761	75134624	75134624	Frame_Shift_Del	A	-	p.Q81fs
KIRC	TCGA-B0-4710-01	NR6A1	ENST00000416460.2,ENST00000373584.3,ENST00000487099.2,ENST00000344523.4	chr9	127289057:127289179:127298156:127298411:127300370:127300595,	127298157	127298411	127298262	127298262	Frame_Shift_Del	T	-	p.Q325fs
KIRC	TCGA-B0-4710-01	PUSL1	ENST00000379031.5	chr1	1246013:1246068:1246288:1246451:1246709:1247056,	1246289	1246451	1246311	1246312	Frame_Shift_Ins	-	G	p.L241fs
KIRC	TCGA-B0-4710-01	NREP	ENST00000395634.3	chr5	111071192:111071204:111310970:111311075:111312406:111312628,	111310971	111311075	111310973	111310973	Frame_Shift_Del	A	-	p.C45fs
KIRC	TCGA-B0-4710-01	ARL15	ENST00000510591.2,ENST00000502271.1,ENST00000504924.1	chr5	53182274:53182543:53409031:53409240:53450409:53450469,	53409032	53409240	53409047	53409047	Frame_Shift_Del	A	-	p.R150fs
KIRC	TCGA-B0-4710-01	ARL15	ENST00000510591.2,ENST00000502271.1,ENST00000504924.1	chr5	53182274:53182543:53409031:53409240:53450409:53450469,	53409032	53409240	53409049	53409049	Frame_Shift_Del	C	-	p.A149fs
KIRC	TCGA-B0-4710-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118633920:118634015:118635916:118636063:118638930:118639060,	118635917	118636063	118635936	118635937	Frame_Shift_Ins	-	A	p.I209fs
KIRC	TCGA-B0-4700-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541958	187541958	Frame_Shift_Del	A	-	p.S1928fs
KIRC	TCGA-B0-4700-01	PEX5	ENST00000434354.2	chr12	7342302:7342346:7342957:7343165:7343483:7343519,	7342958	7343165	7343149	7343153	Frame_Shift_Del	GTGCA	-	p.59_60del
KIRC	TCGA-B0-4700-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711905	89711905	Frame_Shift_Del	G	-	p.Y174X
KIRC	TCGA-AK-3426-01	PTPRM	ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	7906502:7906581:7926565:7926681:7949178:7949353,	7926566	7926681	7926652	7926656	Frame_Shift_Del	ACCGT	-	p.211_213del
KIRC	TCGA-AK-3426-01	ATP12A	ENST00000381946.3	chr13	25264741:25264859:25265119:25265388:25266566:25266765,	25265120	25265388	25265253	25265254	Frame_Shift_Ins	-	GG	p.A317fs
KIRC	TCGA-AK-3426-01	ATP12A	ENST00000218548.6	chr13	25264741:25264859:25265101:25265388:25266566:25266765,	25265102	25265388	25265253	25265254	Frame_Shift_Ins	-	GG	p.A317fs
KIRC	TCGA-AK-3426-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899695	133899696	Frame_Shift_Ins	-	C	p.F693fs
KIRC	TCGA-CW-5583-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50154291	50154294	Frame_Shift_Del	TGCA	-	p.215_216del
KIRC	TCGA-CW-5583-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508221	195508221	Frame_Shift_Del	A	-	p.V3411fs
KIRC	TCGA-CW-5583-01	MYH3	ENST00000226209.7,ENST00000583535.1	chr17	10536907:10537032:10537333:10537499:10538156:10538340,	10537334	10537499	10537344	10537344	Frame_Shift_Del	C	-	p.N1505fs
KIRC	TCGA-CW-5583-01	MYH3	ENST00000226209.7,ENST00000583535.1	chr17	10536907:10537032:10537333:10537499:10538156:10538340,	10537334	10537499	10537346	10537347	Frame_Shift_Del	TA	-	p.1504_1504del
KIRC	TCGA-CW-5588-01	XPNPEP1	ENST00000430337.1	chr10	111652769:111652833:111667448:111667573:111674768:111674833,111652769:111652833:111667448:111667573:111683159:111683189,111651479:111651584:111667448:111667573:111683159:111683189,111651479:111651584:111667448:111667573:111674768:111674833,	111667449	111667573	111667520	111667521	Frame_Shift_Ins	-	T	p.A59fs
KIRC	TCGA-CW-5588-01	RBM3	ENST00000489344.1,ENST00000376759.3,ENST00000430348.2,ENST00000376755.1,ENST00000466764.1,ENST00000354480.2	chrX	48434701:48434807:48434895:48434992:48435413:48435497,	48434896	48434992	48434991	48434992	Frame_Shift_Ins	-	G	p.R138fs
KIRC	TCGA-CW-5588-01	CLASRP	ENST00000391953.4,ENST00000221455.3	chr19	45570728:45570852:45571272:45571312:45571677:45571738,	45571273	45571312	45571279	45571280	Frame_Shift_Ins	-	C	p.E558fs
KIRC	TCGA-CW-5588-01	CLASRP	ENST00000391952.3	chr19	45570728:45570852:45571272:45571316:45572323:45572378,45570728:45570852:45571272:45571316:45571677:45571738,	45571273	45571316	45571279	45571280	Frame_Shift_Ins	-	C	p.E558fs
KIRC	TCGA-CW-5588-01	AHR	ENST00000463496.1	chr7	17338306:17338953:17349559:17349747:17362124:17362231,	17349560	17349747	17349694	17349694	Frame_Shift_Del	T	-	p.L67fs
KIRC	TCGA-CW-5588-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47888235	47888235	Frame_Shift_Del	T	-	p.P39fs
KIRC	TCGA-CW-6087-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980279	201980279	Frame_Shift_Del	T	-	p.C5fs
KIRC	TCGA-CW-6087-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980279	201980279	Frame_Shift_Del	T	-	p.C5fs
KIRC	TCGA-B0-5115-01	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11236802:11236935:11346483:11346739:11364807:11365002,	11346484	11346739	11346669	11346676	Frame_Shift_Del	GGCATTCT	-	p.479_482del
KIRC	TCGA-B0-5115-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379172	77379172	Frame_Shift_Del	A	-	p.E378fs
KIRC	TCGA-B0-5115-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188227	10188227	Frame_Shift_Del	A	-	p.G123fs
KIRC	TCGA-B0-5115-01	ZC3H7A	ENST00000571405.1,ENST00000575984.1,ENST00000355758.4,ENST00000396516.2	chr16	11844450:11845362:11846524:11846688:11850092:11850226,	11846525	11846688	11846601	11846602	Frame_Shift_Del	TC	-	p.884_884del
KIRC	TCGA-CJ-5686-01	SPG7	ENST00000561911.1,ENST00000268704.2	chr16	89614410:89614521:89616901:89617017:89619386:89619487,	89616902	89617017	89616909	89616910	Frame_Shift_Ins	-	A	p.A557fs
KIRC	TCGA-CZ-5462-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349043	89349043	Frame_Shift_Del	C	-	p.V1303fs
KIRC	TCGA-CZ-5462-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963874	33963877	Frame_Shift_Del	AGAA	-	p.270_271del
KIRC	TCGA-CZ-5462-01	GPR107	ENST00000372406.1,ENST00000372410.3,ENST00000493417.1,ENST00000347136.6	chr9	132863384:132863502:132866698:132866829:132869774:132869818,	132866699	132866829	132866764	132866779	Frame_Shift_Del	GTGGAAGGACTCTCTA	-	p.399_404del
KIRC	TCGA-CZ-5462-01	ITLN2	ENST00000368029.3,ENST00000494442.1	chr1	160917718:160917822:160919835:160919956:160920342:160920501,	160919836	160919956	160919906	160919907	Frame_Shift_Ins	-	G	p.P217fs
KIRC	TCGA-BP-5180-01	VWA8	ENST00000281496.6,ENST00000379310.3	chr13	42460916:42460966:42461332:42461497:42465555:42465723,	42461333	42461497	42461418	42461428	Frame_Shift_Del	GGCAAGCCCAA	-	p.241_244del
KIRC	TCGA-BP-5180-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050621	202050621	Frame_Shift_Del	T	-	p.K40fs
KIRC	TCGA-AK-3458-01	CENPJ	ENST00000381884.4,ENST00000545981.1,ENST00000471870.1	chr13	25458538:25458601:25459413:25459524:25459743:25459808,	25459414	25459524	25459520	25459521	Frame_Shift_Ins	-	C	p.A1124fs
KIRC	TCGA-AK-3458-01	COL15A1	ENST00000375001.3	chr9	101778257:101778401:101782670:101782724:101784372:101784432,	101782671	101782724	101782706	101782707	Frame_Shift_Ins	-	G	p.A561fs
KIRC	TCGA-AK-3458-01	ETV1	ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000399357.3,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000343495.5	chr7	13935482:13935712:13940362:13940464:13946054:13946123,	13940363	13940464	13940460	13940461	Frame_Shift_Ins	-	C	p.A372fs
KIRC	TCGA-AK-3458-01	RPRD2	ENST00000401000.4,ENST00000539519.1,ENST00000492220.1,ENST00000369068.4	chr1	150432535:150432793:150437002:150437203:150443036:150443456,	150437003	150437203	150437082	150437083	Frame_Shift_Ins	-	C	p.A497fs
KIRC	TCGA-AK-3458-01	HAUS4	ENST00000554516.1,ENST00000554446.1,ENST00000554373.1,ENST00000554349.1,ENST00000342454.8,ENST00000555986.1,ENST00000556915.1,ENST00000554651.1,ENST00000541587.1,ENST00000206474.7,ENST00000347758.2,ENST00000557591.1,ENST00000397409.4,ENST00000555367.1,ENST00000555040.1	chr14	23421536:23421668:23421749:23421892:23424308:23424385,	23421750	23421892	23421803	23421806	Frame_Shift_Del	GTGA	-	p.48_49del
KIRC	TCGA-B2-4101-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52685779:52685826:52692214:52692331:52696148:52696292,	52692215	52692331	52692279	52692280	Frame_Shift_Del	AC	-	p.194_194del
KIRC	TCGA-CZ-4859-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188305	10188306	Frame_Shift_Ins	-	AT	p.N150fs
KIRC	TCGA-CZ-4859-01	ZZEF1	ENST00000573183.1,ENST00000571436.1,ENST00000572426.1,ENST00000381638.2	chr17	3937308:3937586:3945722:3945862:3947517:3947668,	3945723	3945862	3945851	3945851	Frame_Shift_Del	A	-	p.S2060X
KIRC	TCGA-CZ-4859-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000578199.1,ENST00000540042.1,ENST00000269571.5,ENST00000582648.1,ENST00000584601.1,ENST00000583038.1,ENST00000540147.1,ENST00000582788.1	chr17	37868639:37868701:37871538:37871612:37871698:37871759,	37871539	37871612	37871549	37871550	Frame_Shift_Ins	-	C	p.S387fs
KIRC	TCGA-B0-5402-01	ALOX15	ENST00000576572.1	chr17	4541511:4541672:4542144:4542267:4542345:4542427,	4542145	4542267	4542223	4542224	Frame_Shift_Ins	-	C	p.A155fs
KIRC	TCGA-B0-5402-01	SFXN4	ENST00000369131.4,ENST00000330036.6,ENST00000461438.1,ENST00000355697.2,ENST00000466218.1	chr10	120916189:120916268:120917179:120917245:120917382:120917439,	120917180	120917245	120917207	120917208	Frame_Shift_Ins	-	C	p.G170fs
KIRC	TCGA-CJ-4908-01	MRPL39	ENST00000307301.7	chr21	26957967:26958066:26960012:26960101:26961146:26961194,	26960013	26960101	26960039	26960039	Frame_Shift_Del	C	-	p.Y345fs
KIRC	TCGA-CJ-4908-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188297	10188297	Frame_Shift_Del	T	-	p.I147fs
KIRC	TCGA-BP-4161-01	TM4SF19	ENST00000273695.3,ENST00000446879.1	chr3	196051141:196051311:196053825:196053903:196054260:196054462,	196053826	196053903	196053853	196053854	Frame_Shift_Ins	-	C	p.C84fs
KIRC	TCGA-BP-4161-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831858	61831858	Frame_Shift_Del	T	-	p.V2928fs
KIRC	TCGA-BP-4161-01	MDH2	ENST00000490105.1	chr7	75677478:75677544:75684147:75684316:75686727:75686765,75677478:75677840:75684147:75684316:75686727:75686765,	75684148	75684316	75684192	75684193	Frame_Shift_Ins	-	C	p.G37fs
KIRC	TCGA-B0-5116-01	INPP4B	ENST00000308502.4,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000514525.1,ENST00000508116.1,ENST00000511838.1,ENST00000510812.1,ENST00000262992.4	chr4	143066992:143067149:143081510:143081714:143094784:143094962,	143081511	143081714	143081662	143081662	Frame_Shift_Del	A	-	p.L471fs
KIRC	TCGA-B0-5116-01	CORO2B	ENST00000566799.1,ENST00000543950.1,ENST00000261861.5,ENST00000540068.1	chr15	69003880:69004045:69006263:69006380:69006897:69007002,	69006264	69006380	69006276	69006276	Frame_Shift_Del	A	-	p.C220X
KIRC	TCGA-BP-5168-01	SLC16A14	ENST00000295190.4	chr2	230899697:230902247:230910460:230911438:230914476:230914620,	230910461	230911438	230910577	230910577	Frame_Shift_Del	A	-	p.F422fs
KIRC	TCGA-BP-5168-01	TRMT13	ENST00000370141.2	chr1	100609624:100609699:100613449:100613882:100614180:100616053,	100613450	100613882	100613814	100613814	Frame_Shift_Del	T	-	p.N394fs
KIRC	TCGA-BP-5168-01	SUZ12	ENST00000322652.5,ENST00000580398.1	chr17	30303539:30303633:30310017:30310123:30315338:30315516,	30310018	30310123	30310087	30310088	Frame_Shift_Ins	-	A	p.K329fs
KIRC	TCGA-BP-5168-01	KAT6A	ENST00000418721.1,ENST00000265713.2,ENST00000406337.1,ENST00000396930.3	chr8	41798359:41798962:41800310:41800518:41801265:41801497,	41800311	41800518	41800349	41800382	Frame_Shift_Del	CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC	-	p.789_800del
KIRC	TCGA-BP-5168-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27500363:27500499:27500922:27501064:27503658:27503836,	27500923	27501064	27500985	27500986	Frame_Shift_Ins	-	T	p.E1077fs
KIRC	TCGA-B8-A54D-01	TUBGCP6	ENST00000439308.2	chr22	50658385:50658444:50658620:50660303:50660456:50660531,	50658621	50660303	50659442	50659442	Frame_Shift_Del	T	-	p.R1116fs
KIRC	TCGA-B8-A54D-01	TUBGCP6	ENST00000248846.5	chr22	50658385:50658444:50658679:50660303:50660456:50660531,	50658680	50660303	50659442	50659442	Frame_Shift_Del	T	-	p.R1116fs
KIRC	TCGA-B8-A54D-01	ARHGAP26	ENST00000274498.4,ENST00000475287.1,ENST00000378004.3,ENST00000378013.2	chr5	142258938:142259010:142264862:142264964:142273802:142273900,	142264863	142264964	142264938	142264941	Frame_Shift_Del	AAAA	-	p.153_154del
KIRC	TCGA-B0-5092-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847383	28847383	Frame_Shift_Del	G	-	p.S1008fs
KIRC	TCGA-B0-5092-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847383	28847383	Frame_Shift_Del	G	-	p.S1008fs
KIRC	TCGA-B0-5092-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847383	28847383	Frame_Shift_Del	G	-	p.S1008fs
KIRC	TCGA-B0-5092-01	CAMK1D	ENST00000378847.3,ENST00000378845.1	chr10	12811671:12811798:12833156:12833232:12856193:12856306,	12833157	12833232	12833227	12833228	Frame_Shift_Ins	-	A	p.Y212fs
KIRC	TCGA-B0-4852-01	CCAR1	ENST00000536012.1,ENST00000479143.2,ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543706.1,ENST00000543225.1	chr10	70517106:70517134:70520763:70520949:70525644:70525684,	70520764	70520949	70520853	70520857	Frame_Shift_Del	TAAAG	-	p.670_671del
KIRC	TCGA-B0-4852-01	GALNT10	ENST00000377661.2,ENST00000297107.6,ENST00000520647.1	chr5	153765872:153765990:153783663:153783771:153789100:153789199,	153783664	153783771	153783683	153783684	Frame_Shift_Ins	-	CA	p.R359fs
KIRC	TCGA-B0-4852-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4,ENST00000553059.1	chr12	96104218:96104407:96106989:96107116:96131643:96131922,	96106990	96107116	96107078	96107078	Frame_Shift_Del	G	-	p.S302fs
KIRC	TCGA-B0-4852-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541085	187541109	Frame_Shift_Del	TGATGCTGTAGAACACTTTCAGGCC	-	p.2211_2219del
KIRC	TCGA-B0-4852-01	ULK4	ENST00000301831.4	chr3	41759219:41759353:41795852:41795980:41831152:41831335,	41795853	41795980	41795894	41795895	Frame_Shift_Ins	-	A	p.L760fs
KIRC	TCGA-CW-5581-01	ABCG1	ENST00000398457.2,ENST00000347800.2,ENST00000398449.3,ENST00000462050.1,ENST00000361802.2,ENST00000398437.1,ENST00000340588.4,ENST00000343687.3	chr21	43693412:43693545:43697004:43697055:43702383:43702529,	43697005	43697055	43697053	43697068	Frame_Shift_Del	ATGGTAAGTGGGTTGT	-	p.206_207del
KIRC	TCGA-CW-5581-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489924	20489925	Frame_Shift_Ins	-	C	p.L402fs
KIRC	TCGA-BP-4960-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649377	52649377	Frame_Shift_Del	T	-	p.L639fs
KIRC	TCGA-BP-4960-01	CEACAM4	ENST00000600925.1	chr19	42128023:42128141:42131974:42132334:42133267:42133442,	42131975	42132334	42132122	42132123	Frame_Shift_Del	CC	-	p.93_93del
KIRC	TCGA-BP-4960-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717436	73717437	Frame_Shift_Ins	-	A	p.E2783fs
KIRC	TCGA-BP-4960-01	ADHFE1	ENST00000396623.3,ENST00000496501.1,ENST00000449512.1,ENST00000415254.1,ENST00000379385.4,ENST00000276576.7,ENST00000426810.1,ENST00000424777.2	chr8	67356871:67356983:67357452:67357649:67359498:67359576,	67357453	67357649	67357547	67357547	Frame_Shift_Del	A	-	p.A149fs
KIRC	TCGA-B8-A8YJ-01	KLHL2	ENST00000506824.1,ENST00000226725.6,ENST00000514860.1,ENST00000538127.1	chr4	166149958:166150065:166184348:166184511:166215510:166215620,166159929:166160051:166184348:166184511:166215510:166215620,	166184349	166184511	166184374	166184375	Frame_Shift_Ins	-	A	p.L140fs
KIRC	TCGA-B8-A8YJ-01	FGF7	ENST00000560765.2	chr15	49715456:49715637:49716228:49716780:49775347:49775451,	49716229	49716780	49716749	49716749	Frame_Shift_Del	A	-	p.V85fs
KIRC	TCGA-B8-A8YJ-01	FGF7	ENST00000560979.1	chr15	49715456:49715637:49716637:49716780:49775347:49775451,	49716638	49716780	49716749	49716749	Frame_Shift_Del	A	-	p.V85fs
KIRC	TCGA-BP-5010-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711969	89711970	Frame_Shift_Ins	-	C	p.H196fs
KIRC	TCGA-BP-5010-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000436908.1,ENST00000455112.2,ENST00000448002.2	chr7	102495223:102495307:102517913:102518040:102518777:102518897,	102517914	102518040	102517966	102517966	Frame_Shift_Del	T	-	p.N528fs
KIRC	TCGA-BP-4987-01	RIC8B	ENST00000470628.2,ENST00000355478.2,ENST00000462949.1,ENST00000392837.4	chr12	107245227:107245372:107254045:107254190:107279681:107279959,107245227:107245372:107254045:107254190:107264600:107264720,	107254046	107254190	107254049	107254053	Frame_Shift_Del	ATAGT	-	p.437_438del
KIRC	TCGA-CJ-4904-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000505590.1	chr4	100045529:100045617:100047744:100047883:100052654:100052915,100045529:100045617:100047744:100047883:100048359:100048495,	100047745	100047883	100047771	100047771	Frame_Shift_Del	T	-	p.F365fs
KIRC	TCGA-A3-A8OV-01	LAD1	ENST00000367313.3,ENST00000391967.2	chr1	201353919:201353963:201354828:201354933:201355462:201355693,	201354829	201354933	201354899	201354900	Frame_Shift_Ins	-	T	p.M354fs
KIRC	TCGA-A3-A8OV-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828229	72828233	Frame_Shift_Del	GGGGA	-	p.2783_2785del
KIRC	TCGA-A3-A8OV-01	MAPRE3	ENST00000458529.1,ENST00000233121.2	chr2	27246199:27246345:27246963:27247165:27248450:27248605,	27246964	27247165	27247146	27247146	Frame_Shift_Del	G	-	p.K150fs
KIRC	TCGA-A3-A8OV-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514618	169514619	Frame_Shift_Ins	-	A	p.K275_H276delinsX
KIRC	TCGA-A3-A8OV-01	MAPRE3	ENST00000458529.1,ENST00000233121.2	chr2	27246199:27246345:27246963:27247165:27248450:27248605,	27246964	27247165	27247146	27247147	Frame_Shift_Del	GA	-	p.150_150del
KIRC	TCGA-AK-3444-01	CARS2	ENST00000465145.1,ENST00000257347.4,ENST00000541443.1,ENST00000535398.1,ENST00000539269.1	chr13	111329442:111329450:111335397:111335481:111340067:111340173,	111335398	111335481	111335435	111335435	Frame_Shift_Del	T	-	p.L207fs
KIRC	TCGA-BP-4967-01	NEB	ENST00000603639.1,ENST00000424585.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000413693.1,ENST00000397337.2,ENST00000509223.2,ENST00000409198.1,ENST00000172853.10,ENST00000421461.2	chr2	152359862:152359955:152361991:152362084:152362679:152362772,	152361992	152362084	152362014	152362014	Frame_Shift_Del	T	-	p.E7942fs
KIRC	TCGA-BP-4983-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751231	102751231	Frame_Shift_Del	A	-	p.V112fs
KIRC	TCGA-BP-4983-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098412	47098413	Frame_Shift_Ins	-	AT	p.P2288fs
KIRC	TCGA-CZ-5989-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188202	10188212	Frame_Shift_Del	CCTTTGGCTCT	-	p.115_118del
KIRC	TCGA-CZ-5989-01	KIF18A	ENST00000533466.1,ENST00000263181.6	chr11	28112955:28113060:28116189:28116347:28119169:28119434,	28116190	28116347	28116237	28116244	Frame_Shift_Del	CATCCATG	-	p.144_146del
KIRC	TCGA-B2-5633-01	SPINK7	ENST00000504037.1,ENST00000274565.4	chr5	147691988:147692107:147692936:147692962:147693662:147693774,	147692937	147692962	147692956	147692956	Frame_Shift_Del	A	-	p.P27fs
KIRC	TCGA-DV-A4W0-01	UBTF	ENST00000302904.4,ENST00000529383.1,ENST00000436088.1	chr17	42289240:42289374:42289711:42289822:42290186:42290307,	42289712	42289822	42289768	42289768	Frame_Shift_Del	C	-	p.D239fs
KIRC	TCGA-DV-A4W0-01	SOS1	ENST00000426016.1,ENST00000402219.2	chr2	39214613:39214732:39222263:39222528:39224062:39224179,39216410:39216455:39222263:39222528:39224062:39224179,	39222264	39222528	39222445	39222445	Frame_Shift_Del	A	-	p.L1056fs
KIRC	TCGA-DV-A4W0-01	EZR	ENST00000392177.4,ENST00000337147.7,ENST00000367075.3	chr6	159197439:159197536:159204551:159204698:159205675:159205759,	159204552	159204698	159204689	159204692	Frame_Shift_Del	AGCA	-	p.187_188del
KIRC	TCGA-DV-A4W0-01	DRG2	ENST00000583355.1	chr17	17991320:17991401:17997126:17997287:18001583:18001673,17991320:17991401:17997126:17997287:18003882:18003919,17991320:17991401:17997126:17997287:18007114:18007121,	17997127	17997287	17997213	17997213	Frame_Shift_Del	A	-	p.S50fs
KIRC	TCGA-DV-A4W0-01	DRG2	ENST00000467099.2,ENST00000584212.1,ENST00000578767.1,ENST00000496428.2,ENST00000582314.1	chr17	17991320:17991401:17997126:17997282:18001583:18001673,	17997127	17997282	17997213	17997213	Frame_Shift_Del	A	-	p.S50fs
KIRC	TCGA-DV-A4W0-01	DCDC2B	ENST00000409358.1	chr1	32677361:32677438:32677670:32677802:32678090:32678237,	32677671	32677802	32677705	32677705	Frame_Shift_Del	T	-	p.P143fs
KIRC	TCGA-DV-5576-01	PEX5	ENST00000434354.2	chr12	7342302:7342346:7342957:7343165:7343483:7343519,	7342958	7343165	7343151	7343155	Frame_Shift_Del	GCAGC	-	p.59_61del
KIRC	TCGA-B0-5703-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68119560:68119687:68160350:68160513:68191771:68191971,68156932:68157024:68160350:68160513:68191771:68191971,	68160351	68160513	68160480	68160480	Frame_Shift_Del	A	-	p.V456fs
KIRC	TCGA-B0-5703-01	DNAJC1	ENST00000376980.3	chr10	22171210:22171368:22193450:22193541:22207707:22207801,	22193451	22193541	22193512	22193512	Frame_Shift_Del	T	-	p.E254fs
KIRC	TCGA-CJ-5671-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702517	52702532	Frame_Shift_Del	ATAATAGGACTTTGCA	-	p.123_128del
KIRC	TCGA-BP-4164-01	RPS21	ENST00000343986.4	chr20	60962907:60962970:60963364:60963420:60963512:60963575,	60963365	60963420	60963416	60963419	Frame_Shift_Del	TCAA	-	p.79_80del
KIRC	TCGA-CW-5580-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588748	52588748	Frame_Shift_Del	G	-	p.P1427fs
KIRC	TCGA-CW-5580-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554712.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53360093:53360145:53385840:53386074:53417129:53417286,	53385841	53386074	53385912	53385912	Frame_Shift_Del	T	-	p.K107fs
KIRC	TCGA-CZ-5470-01	USF1	ENST00000496363.1,ENST00000534633.1,ENST00000368020.1,ENST00000368021.3,ENST00000435396.1,ENST00000473969.2	chr1	161011179:161011201:161011440:161011636:161011905:161012007,	161011441	161011636	161011524	161011524	Frame_Shift_Del	C	-	p.G130fs
KIRC	TCGA-CZ-5470-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326058	89326059	Frame_Shift_Ins	-	C	p.T375fs
KIRC	TCGA-CZ-5470-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610659	52610659	Frame_Shift_Del	T	-	p.I1172fs
KIRC	TCGA-CZ-5987-01	SLA2	ENST00000262866.4,ENST00000360672.2	chr20	35260997:35261101:35261945:35262032:35262892:35262992,	35261946	35262032	35261962	35261962	Frame_Shift_Del	C	-	p.A88fs
KIRC	TCGA-B0-5697-01	CNTRL	ENST00000373855.1,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123910949:123911139:123912447:123912761:123914762:123914971,	123912448	123912761	123912468	123912475	Frame_Shift_Del	AGTCAGGA	-	p.1223_1226del
KIRC	TCGA-B0-5697-01	CNTRL	ENST00000431571.1	chr9	123910949:123911139:123912447:123912583:123914762:123914971,	123912448	123912583	123912468	123912475	Frame_Shift_Del	AGTCAGGA	-	p.1223_1226del
KIRC	TCGA-B0-5697-01	ICOSLG	ENST00000344330.4,ENST00000407780.3,ENST00000400379.3	chr21	45655154:45655445:45656749:45657100:45658330:45658371,	45656750	45657100	45656924	45656925	Frame_Shift_Ins	-	G	p.S78fs
KIRC	TCGA-EU-5905-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188260	10188260	Frame_Shift_Del	T	-	p.E134fs
KIRC	TCGA-DV-A4VX-01	DERL1	ENST00000419562.2	chr8	124031434:124031485:124033686:124033739:124034923:124035019,124031434:124031545:124033686:124033739:124054209:124054362,	124033687	124033739	124033690	124033690	Frame_Shift_Del	C	-	p.G168fs
KIRC	TCGA-DV-A4VX-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560518	32560518	Frame_Shift_Del	T	-	p.A214fs
KIRC	TCGA-DV-A4VX-01	XPO1	ENST00000428210.1,ENST00000406957.1,ENST00000401558.2,ENST00000404992.2	chr2	61722589:61722748:61724013:61724142:61725807:61725927,	61724014	61724142	61724041	61724041	Frame_Shift_Del	A	-	p.T288fs
KIRC	TCGA-DV-A4VX-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098386	47098387	Frame_Shift_Del	AT	-	p.2296_2297del
KIRC	TCGA-DV-A4VX-01	ACTL6A	ENST00000468767.2	chr3	179291156:179291257:179292157:179292289:179293190:179293276,	179292158	179292289	179292161	179292161	Frame_Shift_Del	A	-	p.W127X
KIRC	TCGA-DV-A4VX-01	ACTL6A	ENST00000487978.1	chr3	179291156:179291257:179292157:179292255:179293190:179293276,	179292158	179292255	179292161	179292161	Frame_Shift_Del	A	-	p.W127X
KIRC	TCGA-B0-5121-01	ZNF692	ENST00000366469.5,ENST00000451251.1,ENST00000463519.1,ENST00000478107.1,ENST00000470787.2,ENST00000306601.4,ENST00000468455.1,ENST00000412341.2,ENST00000496411.1,ENST00000477070.2,ENST00000533927.1	chr1	249149926:249150145:249150712:249150761:249151432:249151635,249150571:249150621:249150712:249150761:249151432:249151635,	249150713	249150761	249150756	249150764	Frame_Shift_Del	CCAAATCTG	-	p.164_166del
KIRC	TCGA-BP-4988-01	TTC32	ENST00000333610.3	chr2	20096403:20096887:20097629:20097796:20101466:20101717,	20097630	20097796	20097726	20097729	Frame_Shift_Del	AATC	-	p.73_74del
KIRC	TCGA-CJ-4920-01	PTPN18	ENST00000175756.5,ENST00000409022.2,ENST00000347849.3,ENST00000462996.1	chr2	131128129:131128196:131128277:131128355:131128447:131128490,	131128278	131128355	131128292	131128292	Frame_Shift_Del	C	-	p.D257fs
KIRC	TCGA-CJ-4920-01	PTPN18	ENST00000490812.1	chr2	131127700:131127763:131128129:131128355:131128447:131128490,	131128130	131128355	131128292	131128292	Frame_Shift_Del	C	-	p.D257fs
KIRC	TCGA-CJ-4920-01	SFXN4	ENST00000369131.4,ENST00000355697.2	chr10	120920426:120920481:120920566:120920593:120921851:120921926,	120920567	120920593	120920568	120920569	Frame_Shift_Ins	-	T	p.L93fs
KIRC	TCGA-CJ-4920-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125684	47125684	Frame_Shift_Del	G	-	p.K1863fs
KIRC	TCGA-A3-3367-01	GPHN	ENST00000478722.1,ENST00000544752.2,ENST00000459628.1	chr14	67389382:67389655:67390910:67391009:67431907:67432042,	67390911	67391009	67390942	67390943	Frame_Shift_Ins	-	C	p.V254fs
KIRC	TCGA-A3-3367-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188262	10188263	Frame_Shift_Ins	-	TTTT	p.L135fs
KIRC	TCGA-CZ-4866-01	ARHGEF17	ENST00000263674.3	chr11	73063874:73064057:73066577:73066694:73066905:73066998,	73066578	73066694	73066671	73066671	Frame_Shift_Del	C	-	p.R1182fs
KIRC	TCGA-CZ-4866-01	YTHDC2	ENST00000515883.1,ENST00000161863.4,ENST00000503857.1	chr5	112874770:112874878:112876664:112876813:112878064:112878200,	112876665	112876813	112876663	112876691	Frame_Shift_Del	TTCTTTGATAATTAATTTAGAAGAGAAAC	-	p.404_406del
KIRC	TCGA-CZ-4866-01	FOXP2	ENST00000393489.3,ENST00000403559.4,ENST00000350908.4,ENST00000393494.2,ENST00000393498.2,ENST00000408937.3	chr7	114293980:114294064:114298120:114298322:114299410:114299487,	114298121	114298322	114298238	114298247	Frame_Shift_Del	TCAGTAATCA	-	p.486_489del
KIRC	TCGA-CZ-4866-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000543843.1,ENST00000447398.1,ENST00000459672.1,ENST00000449767.1,ENST00000443864.2,ENST00000497326.1	chr7	44706393:44706450:44713385:44713540:44714009:44714156,	44713386	44713540	44713430	44713434	Frame_Shift_Del	TGACC	-	p.226_227del
KIRC	TCGA-AK-3456-01	SMO	ENST00000249373.3	chr7	128848625:128848692:128849129:128849238:128850203:128850389,	128849130	128849238	128849175	128849176	Frame_Shift_Ins	-	C	p.S468fs
KIRC	TCGA-AK-3456-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214820278	214820279	Frame_Shift_Ins	-	G	p.A2455fs
KIRC	TCGA-AK-3456-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231155174:231155279:231157360:231157503:231158985:231159033,	231157361	231157503	231157476	231157477	Frame_Shift_Ins	-	G	p.G647fs
KIRC	TCGA-CJ-4639-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7797444:7797583:7797732:7797926:7798234:7798468,	7797733	7797926	7797796	7797799	Frame_Shift_Del	ATTA	-	p.439_440del
KIRC	TCGA-CJ-4639-01	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123264564:123264765:123265536:123265716:123267777:123267915,	123265537	123265716	123265686	123265686	Frame_Shift_Del	A	-	p.S4234fs
KIRC	TCGA-CJ-4639-01	SLC2A11	ENST00000316185.8,ENST00000405340.2,ENST00000398356.2,ENST00000345044.6,ENST00000255830.3	chr22	24224945:24225056:24225958:24226060:24226135:24226211,	24225959	24226060	24226035	24226036	Frame_Shift_Ins	-	C	p.I361fs
KIRC	TCGA-CJ-4639-01	SLC39A9	ENST00000555840.1	chr14	69922448:69922583:69925079:69925446:69928413:69929098,	69925080	69925446	69925253	69925254	Frame_Shift_Ins	-	G	p.A289fs
KIRC	TCGA-CJ-4639-01	TMEM144	ENST00000511532.1,ENST00000514558.1,ENST00000504569.1,ENST00000508243.1,ENST00000296529.6	chr4	159136342:159136465:159138472:159138572:159140461:159140542,	159138473	159138572	159138498	159138499	Frame_Shift_Ins	-	A	p.I86fs
KIRC	TCGA-CJ-4639-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189856212:189856257:189856394:189856448:189856909:189856954,	189856395	189856448	189856440	189856440	Frame_Shift_Del	G	-	p.P314fs
KIRC	TCGA-CJ-4639-01	IL13RA1	ENST00000371666.3	chrX	117900492:117900540:117900806:117900939:117907841:117907938,	117900807	117900939	117900881	117900882	Frame_Shift_Ins	-	AA	p.N317fs
KIRC	TCGA-CZ-5988-01	CNNM3	ENST00000305510.3,ENST00000465224.1	chr2	97490911:97490938:97492569:97492719:97493467:97493637,	97492570	97492719	97492576	97492576	Frame_Shift_Del	C	-	p.T459fs
KIRC	TCGA-BP-5198-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350692	89350692	Frame_Shift_Del	G	-	p.P753fs
KIRC	TCGA-BP-5198-01	HERC1	ENST00000443617.2	chr15	63953951:63954220:63955182:63955403:63956668:63956793,	63955183	63955403	63955309	63955310	Frame_Shift_Ins	-	TT	p.N2925fs
KIRC	TCGA-BP-5198-01	LRRC37A2	ENST00000576629.1,ENST00000333412.3	chr17	44618172:44618247:44623620:44623739:44625677:44627209,	44623621	44623739	44623622	44623623	Frame_Shift_Ins	-	T	p.I1019fs
KIRC	TCGA-BP-5198-01	ACIN1	ENST00000557515.1,ENST00000555053.1	chr14	23533563:23533697:23535174:23535217:23536522:23537880,23533563:23533697:23535174:23535217:23538684:23538734,23533563:23533694:23535174:23535217:23538684:23538734,	23535175	23535217	23535201	23535207	Frame_Shift_Del	GATTTGG	-	p.817_819del
KIRC	TCGA-CJ-4637-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188204	10188204	Frame_Shift_Del	T	-	p.L116fs
KIRC	TCGA-CZ-4853-01	CACHD1	ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65095046:65095164:65098281:65098426:65099726:65099943,	65098282	65098426	65098290	65098290	Frame_Shift_Del	A	-	p.Y167fs
KIRC	TCGA-CZ-4853-01	PCIF1	ENST00000372409.3,ENST00000479348.1	chr20	44574687:44574754:44574838:44575023:44575711:44575805,	44574839	44575023	44575022	44575022	Frame_Shift_Del	G	-	p.R537fs
KIRC	TCGA-CZ-4853-01	HVCN1	ENST00000356742.5,ENST00000548312.1,ENST00000242607.8,ENST00000439744.2	chr12	111087972:111088085:111089021:111089253:111093038:111093143,	111089022	111089253	111089051	111089052	Frame_Shift_Ins	-	T	p.R205fs
KIRC	TCGA-CZ-4853-01	SEPT4	ENST00000584528.1	chr17	56603580:56603674:56604042:56604339:56606475:56606564,56603580:56603674:56604042:56604339:56608840:56608912,56603580:56603674:56604042:56604339:56616472:56616519,56603580:56603674:56604042:56604339:56609321:56609398,56603675:56603771:56604042:56604339:56609321:56609398,	56604043	56604339	56604046	56604064	Frame_Shift_Del	AGAGGAATCATAGGGATCA	-	p.128_134del
KIRC	TCGA-CZ-4853-01	PRDM4	ENST00000228437.5	chr12	108140051:108140201:108145191:108145986:108147700:108147886,	108145192	108145986	108145796	108145797	Frame_Shift_Ins	-	C	p.G174fs
KIRC	TCGA-CZ-4853-01	PRDM4	ENST00000550376.1	chr12	108140051:108140201:108145423:108145986:108147700:108147886,	108145424	108145986	108145796	108145797	Frame_Shift_Ins	-	C	p.G174fs
KIRC	TCGA-CZ-4853-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000554584.1	chr14	64453173:64453335:64457128:64457287:64457659:64457833,	64457129	64457287	64457262	64457262	Frame_Shift_Del	T	-	p.I816fs
KIRC	TCGA-B0-4842-01	LIFR	ENST00000263409.4,ENST00000453190.2	chr5	38484876:38484970:38485920:38486082:38489179:38489347,	38485921	38486082	38486023	38486023	Frame_Shift_Del	C	-	p.A799fs
KIRC	TCGA-B8-4622-01	FAM13A	ENST00000508360.1,ENST00000264344.5,ENST00000511976.1,ENST00000508369.1,ENST00000503556.1,ENST00000513837.1	chr4	89653272:89653349:89658622:89658706:89660180:89660276,	89658623	89658706	89658635	89658641	Frame_Shift_Del	GAAGAAG	-	p.877_879del
KIRC	TCGA-CZ-4856-01	WDR25	ENST00000335290.6	chr14	100842775:100842832:100847246:100848083:100934357:100934505,100842769:100842841:100847246:100848083:100934357:100934505,100842877:100843041:100847246:100848083:100934357:100934505,	100847247	100848083	100847481	100847481	Frame_Shift_Del	G	-	p.P73fs
KIRC	TCGA-CJ-4913-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629104	18629105	Frame_Shift_Ins	-	A	p.F121fs
KIRC	TCGA-CJ-4913-01	FBN1	ENST00000537463.2	chr15	48905206:48905289:48936802:48937147:48937771:48937906,	48936803	48937147	48936936	48936936	Frame_Shift_Del	G	-	p.L11fs
KIRC	TCGA-CJ-4913-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610608	52610609	Frame_Shift_Ins	-	T	p.E1189fs
KIRC	TCGA-A3-3357-01	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6	chr2	109102966:109103104:109104154:109104276:109106293:109106470,	109104155	109104276	109104197	109104197	Frame_Shift_Del	G	-	p.K1324fs
KIRC	TCGA-A3-3357-01	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33683963:33684160:33751508:33751653:33881223:33881585,	33751509	33751653	33751536	33751536	Frame_Shift_Del	T	-	p.T203fs
KIRC	TCGA-BP-5196-01	POC1B	ENST00000539190.2,ENST00000549035.1,ENST00000541909.1,ENST00000313546.3,ENST00000547496.1,ENST00000393179.4,ENST00000549304.1	chr12	89864137:89864271:89865390:89865506:89865944:89866052,	89865391	89865506	89865497	89865498	Frame_Shift_Ins	-	T	p.N190fs
KIRC	TCGA-BP-5196-01	IFT81	ENST00000550156.1,ENST00000242591.5,ENST00000552912.1	chr12	110618226:110618376:110628724:110628853:110630421:110630511,	110628725	110628853	110628765	110628766	Frame_Shift_Del	AC	-	p.460_460del
KIRC	TCGA-A3-A6NI-01	MFSD12	ENST00000355415.2,ENST00000398558.4,ENST00000389395.3,ENST00000588918.1,ENST00000589063.1	chr19	3546071:3546166:3546252:3546423:3547269:3547329,	3546253	3546423	3546408	3546409	Frame_Shift_Ins	-	T	p.G347fs
KIRC	TCGA-A3-A6NI-01	WDR11	ENST00000605178.1,ENST00000605202.1	chr10	122610915:122611039:122612035:122612147:122618154:122618308,	122612036	122612147	122612046	122612046	Frame_Shift_Del	G	-	p.Q32fs
KIRC	TCGA-A3-A6NI-01	ADCY10	ENST00000367851.4	chr1	167868660:167868866:167870899:167871043:167871253:167871292,	167870900	167871043	167870995	167870996	Frame_Shift_Del	TT	-	p.114_114del
KIRC	TCGA-A3-A6NI-01	ADCY10	ENST00000367848.1	chr1	167868660:167868866:167870899:167871080:167871253:167871292,	167870900	167871080	167870995	167870996	Frame_Shift_Del	TT	-	p.114_114del
KIRC	TCGA-A3-A6NI-01	SLTM	ENST00000249736.7	chr15	59191001:59191051:59191667:59192082:59193458:59193486,	59191668	59192082	59192018	59192018	Frame_Shift_Del	T	-	p.E237fs
KIRC	TCGA-A3-A6NI-01	SLTM	ENST00000380516.2	chr15	59191001:59191051:59191667:59192136:59193458:59193486,	59191668	59192136	59192018	59192018	Frame_Shift_Del	T	-	p.E237fs
KIRC	TCGA-A3-A6NI-01	RUNDC3B	ENST00000394654.3,ENST00000476114.1,ENST00000493037.1	chr7	87257930:87258261:87280137:87280253:87329736:87329866,	87280138	87280253	87280169	87280170	Frame_Shift_Ins	-	G	p.C52fs
KIRC	TCGA-MM-A84U-01	RAD50	ENST00000265335.6,ENST00000378823.3,ENST00000533482.1	chr5	131925322:131925529:131926915:131927098:131927568:131927726,	131926916	131927098	131927054	131927057	Frame_Shift_Del	CATA	-	p.530_531del
KIRC	TCGA-B8-4154-01	MCTP2	ENST00000456504.1,ENST00000451018.3,ENST00000357742.4	chr15	95001365:95001475:95013561:95013671:95019924:95020022,	95013562	95013671	95013580	95013580	Frame_Shift_Del	C	-	p.V793fs
KIRC	TCGA-B8-4154-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535477	40535490	Frame_Shift_Del	CCCATCCCCCAAAC	-	p.308_312del
KIRC	TCGA-B8-4154-01	MECOM	ENST00000494597.1,ENST00000464456.1,ENST00000264674.3,ENST00000484519.1,ENST00000392736.3,ENST00000494292.1,ENST00000487503.1,ENST00000472280.1,ENST00000433243.2,ENST00000481315.1,ENST00000468789.1,ENST00000460890.1	chr3	168845832:168845848:168849216:168849319:168861485:168861620,	168849217	168849319	168849313	168849314	Frame_Shift_Del	AG	-	p.173_173del
KIRC	TCGA-B8-4154-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451609	55451609	Frame_Shift_Del	A	-	p.L193fs
KIRC	TCGA-B8-4154-01	PEX5	ENST00000434354.2	chr12	7342302:7342346:7342957:7343165:7343483:7343519,	7342958	7343165	7343147	7343151	Frame_Shift_Del	AGGTG	-	p.58_59del
KIRC	TCGA-CW-6093-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46431825:46431918:46439462:46439602:46455023:46455178,	46439463	46439602	46439573	46439574	Frame_Shift_Del	AG	-	p.1005_1006del
KIRC	TCGA-CW-6093-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149699871	149699872	Frame_Shift_Ins	-	T	p.N274fs
KIRC	TCGA-CW-6093-01	MMP10	ENST00000539681.1	chr11	102649943:102650092:102650234:102650476:102651217:102651359,	102650235	102650476	102650395	102650395	Frame_Shift_Del	T	-	p.I63fs
KIRC	TCGA-CW-6093-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188224	10188224	Frame_Shift_Del	G	-	p.A122fs
KIRC	TCGA-BP-5174-01	TMEM168	ENST00000447395.1,ENST00000312814.6,ENST00000454074.1	chr7	112407229:112407799:112412835:112413110:112415230:112415373,	112412836	112413110	112412960	112412960	Frame_Shift_Del	A	-	p.D475fs
KIRC	TCGA-BP-5174-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489924	20489925	Frame_Shift_Ins	-	C	p.L402fs
KIRC	TCGA-BP-5174-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188204	10188219	Frame_Shift_Del	TTTGGCTCTTCAGAGA	-	p.116_121del
KIRC	TCGA-BP-5174-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188204	10188220	Frame_Shift_Del	TTTGGCTCTTCAGAGAT	-	p.116_121del
KIRC	TCGA-B0-5690-01	CDK19	ENST00000323817.3,ENST00000368911.3,ENST00000457688.1,ENST00000463016.1	chr6	110988636:110988777:110991633:110991744:111067328:111067404,	110991634	110991744	110991663	110991664	Frame_Shift_Ins	-	C	p.L96fs
KIRC	TCGA-B0-5690-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47059127:47059229:47061249:47061330:47079155:47079267,	47061250	47061330	47061248	47061263	Frame_Shift_Del	AACCTTACCTCTTTTC	-	p.2475_2477del
KIRC	TCGA-B0-5690-01	ERBB3	ENST00000415288.2,ENST00000551085.1,ENST00000267101.3	chr12	56486530:56486604:56486769:56486860:56487128:56487334,	56486770	56486860	56486848	56486849	Frame_Shift_Ins	-	A	p.R421fs
KIRC	TCGA-B0-5095-01	RIN3	ENST00000556385.1,ENST00000216487.7	chr14	93022184:93022300:93043704:93043822:93081751:93081824,	93043705	93043822	93043822	93043824	Frame_Shift_Del	AGT	-	p.122_123del
KIRC	TCGA-B0-5095-01	SLC47A2	ENST00000325411.5,ENST00000350657.5,ENST00000467609.1	chr17	19605917:19605987:19606404:19606480:19607382:19607491,	19606405	19606480	19606416	19606416	Frame_Shift_Del	A	-	p.T398fs
KIRC	TCGA-CZ-5452-01	KITLG	ENST00000228280.5,ENST00000347404.5	chr12	88926217:88926280:88939528:88939642:88974040:88974238,	88939529	88939642	88939566	88939566	Frame_Shift_Del	T	-	p.N31fs
KIRC	TCGA-B0-5119-01	SPG7	ENST00000561911.1,ENST00000268704.2	chr16	89614410:89614521:89616901:89617017:89619386:89619487,	89616902	89617017	89616935	89616935	Frame_Shift_Del	A	-	p.E566fs
KIRC	TCGA-B0-5119-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649433	52649434	Frame_Shift_Del	CC	-	p.620_620del
KIRC	TCGA-B0-5119-01	SHCBP1	ENST00000566016.1	chr16	46651545:46651661:46652116:46652284:46655168:46655263,	46652117	46652284	46652119	46652119	Frame_Shift_Del	A	-	p.L90fs
KIRC	TCGA-B0-5119-01	WDR33	ENST00000322313.4	chr2	128480826:128480921:128481906:128482017:128482460:128482539,	128481907	128482017	128481936	128481937	Frame_Shift_Ins	-	AT	p.I389fs
KIRC	TCGA-B2-4098-01	CIT	ENST00000392521.2,ENST00000261833.7	chr12	120222828:120222869:120241009:120241193:120260623:120260777,	120241010	120241193	120241113	120241113	Frame_Shift_Del	A	-	p.S398fs
KIRC	TCGA-B2-4098-01	PATL2	ENST00000558481.1,ENST00000560780.1	chr15	44962164:44962285:44964212:44964437:44964585:44964654,	44964213	44964437	44964348	44964349	Frame_Shift_Ins	-	G	p.P174fs
KIRC	TCGA-B2-4098-01	PATL2	ENST00000434130.1,ENST00000560775.1	chr15	44962164:44962285:44964212:44964354:44964585:44964654,	44964213	44964354	44964348	44964349	Frame_Shift_Ins	-	G	p.P174fs
KIRC	TCGA-B2-4098-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086414	144086414	Frame_Shift_Del	A	-	p.S237X
KIRC	TCGA-GK-A6C7-01	WDR7	ENST00000254442.3	chr18	54426095:54426184:54444012:54444111:54446661:54446780,	54444013	54444111	54444064	54444064	Frame_Shift_Del	A	-	p.D967fs
KIRC	TCGA-GK-A6C7-01	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000377653.2,ENST00000358144.2	chr9	39177314:39177499:39178153:39178357:39193124:39193272,	39178154	39178357	39178215	39178215	Frame_Shift_Del	T	-	p.H228fs
KIRC	TCGA-GK-A6C7-01	POC5	ENST00000510798.1,ENST00000428202.2,ENST00000503835.1,ENST00000515285.1,ENST00000380475.2,ENST00000446329.2	chr5	74990576:74990656:74998429:74998635:75001528:75001612,	74998430	74998635	74998453	74998454	Frame_Shift_Ins	-	A	p.D164_L165delinsX
KIRC	TCGA-GK-A6C7-01	PPIP5K1	ENST00000488490.1,ENST00000334933.4,ENST00000360301.4	chr15	43852610:43852793:43857064:43857190:43860660:43860714,43851056:43851130:43857064:43857190:43860660:43860714,	43857065	43857190	43857107	43857107	Frame_Shift_Del	G	-	p.H1048fs
KIRC	TCGA-GK-A6C7-01	PISD	ENST00000266095.5,ENST00000473770.1,ENST00000460723.1,ENST00000336566.4,ENST00000437808.1,ENST00000474017.1,ENST00000439502.2,ENST00000382151.2	chr22	32015429:32015822:32016538:32016699:32016981:32017128,	32016539	32016699	32016685	32016686	Frame_Shift_Ins	-	A	p.V253fs
KIRC	TCGA-GK-A6C7-01	SLC16A10	ENST00000368851.5	chr6	111498414:111498868:111527794:111527938:111540016:111540245,	111527795	111527938	111527826	111527826	Frame_Shift_Del	A	-	p.E325fs
KIRC	TCGA-GK-A6C7-01	PISD	ENST00000266095.5,ENST00000473770.1,ENST00000460723.1,ENST00000336566.4,ENST00000437808.1,ENST00000474017.1,ENST00000439502.2,ENST00000382151.2	chr22	32015429:32015822:32016538:32016699:32016981:32017128,	32016539	32016699	32016686	32016686	Frame_Shift_Del	T	-	p.V253X
KIRC	TCGA-G6-A8L6-01	MAX	ENST00000358402.4,ENST00000556892.1,ENST00000358664.4	chr14	65543326:65543381:65544630:65544754:65560425:65560533,	65544631	65544754	65544736	65544742	Frame_Shift_Del	GGATTTG	-	p.62_64del
KIRC	TCGA-G6-A8L6-01	RECK	ENST00000377966.3	chr9	36112301:36112473:36116981:36117174:36118753:36118964,	36116982	36117174	36117089	36117089	Frame_Shift_Del	T	-	p.V723fs
KIRC	TCGA-BP-5195-01	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43330368:43330430:43335412:43335593:43339358:43339487,	43335413	43335593	43335474	43335475	Frame_Shift_Ins	-	T	p.K596fs
KIRC	TCGA-BP-5000-01	ACVR1B	ENST00000563121.1	chr12	52377818:52377950:52378975:52379132:52385646:52385776,	52378976	52379132	52379004	52379005	Frame_Shift_Del	AA	-	p.377_377del
KIRC	TCGA-CZ-5984-01	CSGALNACT2	ENST00000374464.1,ENST00000374466.3	chr10	43650344:43651258:43654162:43654379:43655941:43656043,	43654163	43654379	43654206	43654207	Frame_Shift_Ins	-	T	p.L235fs
KIRC	TCGA-B0-5713-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32088026	32088026	Frame_Shift_Del	C	-	p.A1491fs
KIRC	TCGA-B0-5713-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000424310.2	chr5	158596686:158596827:158600990:158601166:158603639:158603875,	158600991	158601166	158601127	158601128	Frame_Shift_Ins	-	GGACATT	p.L251fs
KIRC	TCGA-B0-5713-01	RPH3AL	ENST00000570638.1,ENST00000575634.1,ENST00000573588.1,ENST00000331302.7,ENST00000576420.1,ENST00000575130.1,ENST00000323434.8,ENST00000574722.1,ENST00000536489.2,ENST00000577079.1,ENST00000573780.1,ENST00000574953.1,ENST00000575736.1	chr17	169312:169340:171062:171206:177257:177322,	171063	171206	171101	171102	Frame_Shift_Ins	-	CT	p.R61fs
KIRC	TCGA-B0-5713-01	RPLP0	ENST00000392514.4,ENST00000551258.1,ENST00000549098.1,ENST00000228306.4,ENST00000546989.1,ENST00000552461.1,ENST00000551150.1,ENST00000546990.1	chr12	120634644:120634737:120635124:120635265:120636356:120636434,	120635125	120635265	120635210	120635210	Frame_Shift_Del	G	-	p.S236fs
KIRC	TCGA-B0-5713-01	TCOF1	ENST00000506630.1	chr5	149769509:149769586:149771106:149771739:149772267:149772353,	149771107	149771739	149771631	149771632	Frame_Shift_Ins	-	C	p.T1137fs
KIRC	TCGA-B0-5713-01	TCOF1	ENST00000513346.1,ENST00000439160.2	chr5	149769509:149769586:149771519:149771739:149772267:149772353,	149771520	149771739	149771631	149771632	Frame_Shift_Ins	-	C	p.T1137fs
KIRC	TCGA-BP-4162-01	KIF3A	ENST00000403231.1,ENST00000378735.1	chr5	132062045:132062190:132069896:132070170:132073105:132073111,	132069897	132070170	132070046	132070062	Frame_Shift_Del	CCCCTCATCTCATCCAC	-	p.39_44del
KIRC	TCGA-BP-4162-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2	chr9	96214665:96214671:96233422:96233669:96238537:96238620,	96233423	96233669	96233580	96233589	Frame_Shift_Del	GTCTCACCAC	-	p.211_214del
KIRC	TCGA-BP-4162-01	RAP1A	ENST00000369709.3,ENST00000436150.2,ENST00000545460.1,ENST00000356415.1	chr1	112245957:112246098:112246964:112247108:112251770:112251886,	112246965	112247108	112247019	112247019	Frame_Shift_Del	G	-	p.V126fs
KIRC	TCGA-BP-4162-01	TMCO6	ENST00000252100.6,ENST00000510336.1,ENST00000514449.1,ENST00000394671.3	chr5	140021249:140021365:140021454:140021638:140021899:140021998,	140021455	140021638	140021584	140021585	Frame_Shift_Ins	-	C	p.L148fs
KIRC	TCGA-BP-4162-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000439616.2,ENST00000543843.1,ENST00000447398.1,ENST00000449767.1	chr7	44721318:44721447:44733423:44733603:44734022:44734175,	44733424	44733603	44733565	44733566	Frame_Shift_Ins	-	G	p.W493fs
KIRC	TCGA-B0-4810-01	ANAPC4	ENST00000510092.1,ENST00000315368.3,ENST00000515848.1	chr4	25417087:25417162:25418046:25418220:25419237:25419361,	25418047	25418220	25418164	25418164	Frame_Shift_Del	A	-	p.L673X
KIRC	TCGA-B0-4810-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188224	10188224	Frame_Shift_Del	G	-	p.A122fs
KIRC	TCGA-B0-4810-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833113	25833114	Frame_Shift_Ins	-	A	p.P201fs
KIRC	TCGA-B0-4810-01	FOXP3	ENST00000376199.2,ENST00000557224.1,ENST00000376197.1,ENST00000518685.1	chrX	49113381:49113469:49113883:49114022:49114752:49114901,	49113884	49114022	49113932	49113935	Frame_Shift_Del	TGGT	-	p.135_136del
KIRC	TCGA-CJ-5679-01	SNW1	ENST00000261531.7,ENST00000556428.1,ENST00000554775.1	chr14	78184133:78184629:78184709:78184873:78187053:78187171,	78184710	78184873	78184785	78184797	Frame_Shift_Del	CTCTGGGCCATAT	-	p.442_446del
KIRC	TCGA-CJ-5679-01	ATP6V1D	ENST00000556058.1,ENST00000555335.1,ENST00000555012.1,ENST00000554236.1,ENST00000216442.7	chr14	67817348:67817407:67819639:67819757:67826374:67826459,	67819640	67819757	67819728	67819728	Frame_Shift_Del	T	-	p.K24fs
KIRC	TCGA-BP-4972-01	TTLL4	ENST00000442769.1,ENST00000258398.4,ENST00000457313.1,ENST00000392102.1	chr2	219605243:219605307:219609831:219609956:219610413:219610524,	219609832	219609956	219609933	219609934	Frame_Shift_Ins	-	T	p.Y588fs
KIRC	TCGA-CZ-4863-01	LAMA1	ENST00000389658.3,ENST00000579014.1	chr18	6959339:6959491:6961584:6961758:6961943:6962058,	6961585	6961758	6961676	6961677	Frame_Shift_Ins	-	C	p.V2512fs
KIRC	TCGA-CZ-4863-01	LAMA1	ENST00000488064.1	chr18	6959339:6959491:6961584:6961691:6961943:6962058,	6961585	6961691	6961676	6961677	Frame_Shift_Ins	-	C	p.V2512fs
KIRC	TCGA-CZ-4863-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545001	196545001	Frame_Shift_Del	T	-	p.S78fs
KIRC	TCGA-CZ-4863-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42046634:42046765:42049985:42050037:42052520:42052727,	42049986	42050037	42050033	42050033	Frame_Shift_Del	G	-	p.R2396fs
KIRC	TCGA-AK-3430-01	MTMR4	ENST00000323456.5	chr17	56581104:56581259:56581410:56581581:56581663:56581849,	56581411	56581581	56581545	56581546	Frame_Shift_Ins	-	GT	p.G508fs
KIRC	TCGA-AK-3430-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784317	135784317	Frame_Shift_Del	T	-	p.M293fs
KIRC	TCGA-AK-3430-01	SLCO2B1	ENST00000428359.2,ENST00000527180.1,ENST00000289575.5	chr11	74862257:74862442:74876831:74876994:74883423:74883614,74862257:74862442:74876831:74876994:74880217:74880286,74875007:74875145:74876831:74876994:74880217:74880286,	74876832	74876994	74876867	74876867	Frame_Shift_Del	T	-	p.Y107fs
KIRC	TCGA-AK-3430-01	POLD3	ENST00000532497.1,ENST00000263681.2,ENST00000527458.1,ENST00000524752.1	chr11	74336548:74336618:74340261:74340368:74345627:74345740,	74340262	74340368	74340306	74340306	Frame_Shift_Del	A	-	p.E315fs
KIRC	TCGA-AK-3430-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702551	52702551	Frame_Shift_Del	A	-	p.F116fs
KIRC	TCGA-AK-3430-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53222963:53223033:53223320:53223920:53224112:53224250,	53223321	53223920	53223899	53223899	Frame_Shift_Del	C	-	p.E1154fs
KIRC	TCGA-AK-3430-01	KIF22	ENST00000400751.5,ENST00000569382.2,ENST00000400750.2,ENST00000561482.1,ENST00000160827.4	chr16	29809913:29810068:29810295:29810505:29810584:29810815,	29810296	29810505	29810383	29810383	Frame_Shift_Del	A	-	p.Q212fs
KIRC	TCGA-AK-3430-01	TMEM145	ENST00000598766.1,ENST00000301204.3	chr19	42821021:42821115:42821860:42822033:42824468:42824589,	42821861	42822033	42821885	42821886	Frame_Shift_Ins	-	AC	p.Y309fs
KIRC	TCGA-AK-3430-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147913	67147913	Frame_Shift_Del	T	-	p.D392fs
KIRC	TCGA-B8-A54I-01	CD200R1	ENST00000471858.1,ENST00000308611.3	chr3	112643336:112643382:112643931:112644040:112647662:112647911,	112643932	112644040	112644015	112644015	Frame_Shift_Del	T	-	p.L266fs
KIRC	TCGA-B8-A54I-01	TOM1L2	ENST00000581396.1,ENST00000537091.2	chr17	17782940:17783057:17787947:17788082:17796974:17797124,17786018:17786177:17787947:17788082:17796974:17797124,17786018:17786177:17787947:17788082:17801909:17801988,	17787948	17788082	17788031	17788031	Frame_Shift_Del	T	-	p.I140fs
KIRC	TCGA-B8-A54I-01	RFC5	ENST00000472603.1,ENST00000392542.2,ENST00000229043.3,ENST00000454402.2	chr12	118462720:118462815:118463551:118463633:118464693:118464823,	118463552	118463633	118463571	118463571	Frame_Shift_Del	G	-	p.D200fs
KIRC	TCGA-BP-5184-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188284	10188287	Frame_Shift_Del	GACG	-	p.142_143del
KIRC	TCGA-BP-5184-01	OLFM2	ENST00000593091.1,ENST00000264833.4,ENST00000590410.1	chr19	9968062:9968158:9968390:9968537:9971320:9971470,	9968391	9968537	9968474	9968475	Frame_Shift_Ins	-	AT	p.V93fs
KIRC	TCGA-B0-5075-01	SLC16A4	ENST00000369781.4,ENST00000461647.2	chr1	110921565:110921978:110923603:110923765:110924273:110924417,110921565:110921978:110923603:110923765:110931858:110931977,110919571:110919783:110923603:110923765:110924273:110924417,	110923604	110923765	110923620	110923623	Frame_Shift_Del	ATCT	-	p.170_171del
KIRC	TCGA-B0-5075-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000397991.4,ENST00000317104.7,ENST00000489671.1,ENST00000467072.1,ENST00000479040.1,ENST00000486111.1,ENST00000495310.1,ENST00000310282.6,ENST00000477292.1	chr3	141671344:141671538:141671752:141671858:141678515:141678682,	141671753	141671858	141671843	141671843	Frame_Shift_Del	G	-	p.P356fs
KIRC	TCGA-B0-5075-01	LDHC	ENST00000280704.4,ENST00000539369.1,ENST00000541669.1,ENST00000536880.1,ENST00000396215.3	chr11	18456286:18456460:18460074:18460192:18472509:18472674,18456286:18456460:18460074:18460192:18467756:18467880,	18460075	18460192	18460186	18460186	Frame_Shift_Del	T	-	p.I235fs
KIRC	TCGA-B0-5075-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439219	52439238	Frame_Shift_Del	GCTGCCTGGAGGCTTCACCA	-	p.335_342del
KIRC	TCGA-B0-5075-01	AHCTF1	ENST00000366508.1,ENST00000326225.3,ENST00000391829.2	chr1	247076533:247076714:247079443:247079697:247081551:247081679,	247079444	247079697	247079629	247079629	Frame_Shift_Del	G	-	p.R73fs
KIRC	TCGA-CJ-4897-01	GFPT1	ENST00000361060.5	chr2	69577229:69577315:69581620:69581700:69583627:69583689,	69581621	69581700	69581619	69581633	Frame_Shift_Del	GAGGTAATTTTACCT	-	p.229_229del
KIRC	TCGA-CJ-4897-01	SMAD3	ENST00000537194.2,ENST00000540846.2,ENST00000327367.4,ENST00000439724.3	chr15	67473578:67473791:67477064:67477202:67479702:67479785,	67477065	67477202	67477111	67477111	Frame_Shift_Del	G	-	p.E306fs
KIRC	TCGA-B0-4945-01	SEC31A	ENST00000507816.1	chr4	83796937:83796975:83800010:83800081:83801951:83802075,	83800011	83800081	83800058	83800058	Frame_Shift_Del	G	-	p.P76fs
KIRC	TCGA-B0-4945-01	SEC31A	ENST00000443462.2,ENST00000513858.1,ENST00000432794.1,ENST00000348405.4,ENST00000311785.7,ENST00000500777.2,ENST00000509142.1,ENST00000514326.1,ENST00000326950.5,ENST00000513323.1,ENST00000505984.1,ENST00000505472.1,ENST00000448323.1,ENST00000508502.1,ENST00000355196.2,ENST00000436790.2,ENST00000508479.1,ENST00000395310.2	chr4	83796937:83796975:83799882:83800081:83801951:83802075,	83799883	83800081	83800058	83800058	Frame_Shift_Del	G	-	p.P76fs
KIRC	TCGA-B0-4945-01	SEC31A	ENST00000507340.1	chr4	83796937:83796975:83799882:83800071:83801951:83802075,	83799883	83800071	83800058	83800058	Frame_Shift_Del	G	-	p.P76fs
KIRC	TCGA-CW-6090-01	TMX2	ENST00000529403.1,ENST00000278422.4	chr11	57505079:57505140:57505825:57505902:57506135:57506242,57505307:57505498:57505825:57505902:57506135:57506242,	57505826	57505902	57505890	57505890	Frame_Shift_Del	T	-	p.D143fs
KIRC	TCGA-CW-6090-01	AKR1B1	ENST00000285930.4,ENST00000487438.1,ENST00000434222.1,ENST00000498771.1,ENST00000465351.1	chr7	134133748:134133871:134134471:134134549:134135537:134135654,	134134472	134134549	134134487	134134487	Frame_Shift_Del	A	-	p.L139fs
KIRC	TCGA-BP-4981-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52662911	52662911	Frame_Shift_Del	T	-	p.Q481fs
KIRC	TCGA-A3-3317-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123215229:123215378:123217270:123217399:123220396:123220620,	123217271	123217399	123217328	123217328	Frame_Shift_Del	T	-	p.P994fs
KIRC	TCGA-A3-3317-01	DOK7	ENST00000340083.5,ENST00000389653.2	chr4	3478068:3478269:3487265:3487385:3491403:3491523,	3487266	3487385	3487325	3487325	Frame_Shift_Del	T	-	p.D197fs
KIRC	TCGA-A3-3317-01	NDUFS1	ENST00000456284.1	chr2	207013743:207013820:207014503:207014649:207017142:207017234,	207014504	207014649	207014550	207014551	Frame_Shift_Ins	-	T	p.A99fs
KIRC	TCGA-A3-3317-01	NDUFS1	ENST00000449699.1,ENST00000454195.1,ENST00000455934.2,ENST00000233190.6	chr2	207013743:207013820:207014541:207014649:207017142:207017234,	207014542	207014649	207014550	207014551	Frame_Shift_Ins	-	T	p.A99fs
KIRC	TCGA-A3-3317-01	DNAJA3	ENST00000262375.6,ENST00000576180.1	chr16	4500403:4500498:4504811:4504928:4505546:4505952,	4504812	4504928	4504893	4504893	Frame_Shift_Del	T	-	p.L474fs
KIRC	TCGA-BP-5008-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1703914	1703918	Frame_Shift_Del	GAGCT	-	p.257_259del
KIRC	TCGA-A3-3362-01	DNA2	ENST00000399179.2,ENST00000399180.2,ENST00000551118.2,ENST00000358410.3	chr10	70218860:70218992:70225423:70225569:70227879:70228063,	70225424	70225569	70225501	70225504	Frame_Shift_Del	TATG	-	p.170_171del
KIRC	TCGA-B0-5711-01	FAM13A	ENST00000264344.5,ENST00000509094.1	chr4	89859238:89859392:89912123:89912301:89930101:89930229,89859238:89859392:89912123:89912301:89941610:89941820,	89912124	89912301	89912229	89912229	Frame_Shift_Del	A	-	p.L167fs
KIRC	TCGA-B0-5711-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77471481	77471481	Frame_Shift_Del	T	-	p.S930fs
KIRC	TCGA-B0-5711-01	NPL	ENST00000367552.2,ENST00000367555.1	chr1	182791249:182791334:182794915:182794955:182798737:182798814,182787772:182787824:182794915:182794955:182798737:182798814,	182794916	182794955	182794926	182794926	Frame_Shift_Del	A	-	p.Q250fs
KIRC	TCGA-B0-5711-01	ALDOB	ENST00000374855.4	chr9	104182859:104184186:104187124:104187324:104187734:104187909,	104187125	104187324	104187311	104187312	Frame_Shift_Ins	-	A	p.L271fs
KIRC	TCGA-CZ-5451-01	HPGD	ENST00000296521.7	chr4	175413083:175413245:175416698:175416775:175429846:175429943,	175416699	175416775	175416726	175416726	Frame_Shift_Del	G	-	p.I158X
KIRC	TCGA-CZ-5451-01	KNTC1	ENST00000333479.7	chr12	123028146:123028181:123028705:123028816:123030722:123030816,	123028706	123028816	123028814	123028814	Frame_Shift_Del	G	-	p.I222fs
KIRC	TCGA-CZ-5451-01	CNOT1	ENST00000563130.1,ENST00000567188.1,ENST00000569924.1,ENST00000245138.4,ENST00000317147.5,ENST00000569240.1	chr16	58554918:58554940:58555086:58555221:58557273:58557406,	58555087	58555221	58555162	58555168	Frame_Shift_Del	AAGGTAA	-	p.2324_2326del
KIRC	TCGA-CZ-5451-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108202605:108202764:108203488:108203627:108204612:108204635,	108203489	108203627	108203617	108203617	Frame_Shift_Del	G	-	p.K2639fs
KIRC	TCGA-CZ-5451-01	DHDH	ENST00000522614.1,ENST00000221403.2	chr19	49438256:49438368:49439288:49439452:49442705:49442958,	49439289	49439452	49439432	49439433	Frame_Shift_Ins	-	A	p.R116fs
KIRC	TCGA-CJ-4901-01	SPEN	ENST00000438066.1	chr1	16199310:16199631:16202696:16203173:16235815:16235976,16199996:16200890:16202696:16203173:16235815:16235976,	16202697	16203173	16203144	16203144	Frame_Shift_Del	C	-	p.I284fs
KIRC	TCGA-CZ-5982-01	SIRT1	ENST00000432464.1,ENST00000212015.6,ENST00000406900.1,ENST00000403579.1	chr10	69669012:69669199:69672230:69672788:69676021:69678143,	69672231	69672788	69672600	69672600	Frame_Shift_Del	A	-	p.E576fs
KIRC	TCGA-DV-5569-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326058	89326059	Frame_Shift_Ins	-	C	p.T375fs
KIRC	TCGA-B8-4620-01	C21orf58	ENST00000397679.1,ENST00000417060.1,ENST00000397680.1,ENST00000491666.1,ENST00000397682.3,ENST00000291691.7,ENST00000397683.1	chr21	47722398:47722490:47731369:47731481:47734629:47734794,	47731370	47731481	47731440	47731441	Frame_Shift_Del	CT	-	p.217_218del
KIRC	TCGA-B8-4620-01	SEPT10	ENST00000468616.1	chr2	110310663:110310796:110321942:110322111:110323339:110323436,110303626:110303814:110321942:110322111:110323339:110323436,	110321943	110322111	110321954	110321954	Frame_Shift_Del	G	-	p.K340fs
KIRC	TCGA-B8-4620-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000360541.5	chr5	137846253:137846318:137846733:137846889:137847163:137847293,	137846734	137846889	137846859	137846862	Frame_Shift_Del	GTGT	-	p.297_298del
KIRC	TCGA-B8-4620-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373540	36373541	Frame_Shift_Ins	-	C	p.F411fs
KIRC	TCGA-B8-4620-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125280	47125289	Frame_Shift_Del	TCTTGGCTCC	-	p.1994_1997del
KIRC	TCGA-B8-4620-01	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70933718:70933802:70934637:70934737:70938336:70938443,	70934638	70934737	70934671	70934672	Frame_Shift_Ins	-	C	p.V1854fs
KIRC	TCGA-BP-5177-01	BMS1	ENST00000374518.5	chr10	43312765:43312942:43315683:43315872:43315955:43316136,	43315684	43315872	43315792	43315792	Frame_Shift_Del	T	-	p.E896fs
KIRC	TCGA-BP-5177-01	ZNF304	ENST00000391705.3,ENST00000282286.5	chr19	57862859:57863065:57865092:57865219:57867397:57870148,	57865093	57865219	57865095	57865095	Frame_Shift_Del	T	-	p.S12fs
KIRC	TCGA-BP-5177-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58129199:58129340:58131647:58131776:58132546:58132720,	58131648	58131776	58131651	58131652	Frame_Shift_Del	GC	-	p.1841_1841del
KIRC	TCGA-BP-5177-01	UBR7	ENST00000416753.1,ENST00000013070.6,ENST00000553674.1	chr14	93685557:93685707:93686594:93686757:93688658:93688720,	93686595	93686757	93686659	93686659	Frame_Shift_Del	A	-	p.E342fs
KIRC	TCGA-B0-5701-01	EIF2B3	ENST00000372183.3,ENST00000360403.2,ENST00000439363.1	chr1	45340349:45340498:45341289:45341367:45345489:45345680,	45341290	45341367	45341321	45341331	Frame_Shift_Del	TGGACTGGTGG	-	p.338_341del
KIRC	TCGA-B0-5701-01	NFS1	ENST00000374092.4,ENST00000541387.1,ENST00000413203.1,ENST00000374085.1,ENST00000419569.1,ENST00000397425.1,ENST00000440385.1,ENST00000306750.3,ENST00000540053.1,ENST00000421540.1,ENST00000456462.1	chr20	34284298:34284382:34285605:34285722:34286402:34286512,	34285606	34285722	34285631	34285637	Frame_Shift_Del	TCACTCT	-	p.98_100del
KIRC	TCGA-B0-5701-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99893672:99894339:99912479:99912623:99912955:99913012,	99912480	99912623	99912577	99912577	Frame_Shift_Del	A	-	p.L404fs
KIRC	TCGA-B0-5701-01	SDAD1	ENST00000503411.1,ENST00000395710.1,ENST00000356260.5	chr4	76897079:76897148:76898798:76898909:76902524:76902623,	76898799	76898909	76898846	76898846	Frame_Shift_Del	C	-	p.E120fs
KIRC	TCGA-B0-5701-01	BRF2	ENST00000220659.6	chr8	37702219:37702731:37704371:37704693:37706113:37706173,	37704372	37704693	37704604	37704605	Frame_Shift_Ins	-	AT	p.R102fs
KIRC	TCGA-B2-5635-01	LRP2	ENST00000263816.3	chr2	169985522:169985594:169989083:169989191:169993901:169994003,	169989084	169989191	169989165	169989165	Frame_Shift_Del	A	-	p.K4550fs
KIRC	TCGA-B2-5635-01	PLEKHA2	ENST00000388745.4,ENST00000420274.1	chr8	38759315:38759410:38775424:38775588:38793511:38793568,38758861:38758963:38775424:38775588:38793511:38793568,	38775425	38775588	38775478	38775479	Frame_Shift_Del	TG	-	p.10_11del
KIRC	TCGA-B2-5635-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188287	10188287	Frame_Shift_Del	G	-	p.D143fs
KIRC	TCGA-B2-5635-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645832	54645832	Frame_Shift_Del	T	-	p.K106fs
KIRC	TCGA-AS-3778-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547909	165547915	Frame_Shift_Del	CTTCATT	-	p.303_305del
KIRC	TCGA-AS-3778-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000487065.1,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136139934:136140005:136141251:136141455:136141609:136141699,	136141252	136141455	136141378	136141379	Frame_Shift_Del	AC	-	p.637_638del
KIRC	TCGA-AS-3778-01	CLTC	ENST00000269122.3,ENST00000393043.1	chr17	57728563:57728677:57733214:57733388:57737751:57737838,	57733215	57733388	57733326	57733327	Frame_Shift_Ins	-	T	p.I303fs
KIRC	TCGA-AS-3778-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188268	10188269	Frame_Shift_Ins	-	C	p.V137fs
KIRC	TCGA-CZ-5459-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188234	10188235	Frame_Shift_Ins	-	T	p.D126fs
KIRC	TCGA-CZ-5459-01	ABHD3	ENST00000580981.1	chr18	19237064:19237113:19239130:19239304:19243638:19244191,19237064:19237113:19239130:19239304:19244078:19244191,19237064:19237113:19239130:19239304:19282276:19282459,	19239131	19239304	19239274	19239274	Frame_Shift_Del	A	-	p.G234fs
KIRC	TCGA-CZ-5459-01	WDR20	ENST00000556094.1	chr14	102606317:102606509:102661274:102661457:102674939:102675020,102606251:102606324:102661274:102661457:102689166:102689695,	102661275	102661457	102661353	102661354	Frame_Shift_Ins	-	C	p.T122fs
KIRC	TCGA-CZ-5459-01	CERCAM	ENST00000372838.4	chr9	131182759:131183353:131185146:131185257:131185424:131185542,	131185147	131185257	131185203	131185209	Frame_Shift_Del	CGGCTGT	-	p.85_87del
KIRC	TCGA-CZ-5459-01	PDXK	ENST00000398078.3,ENST00000498040.1,ENST00000481512.1,ENST00000490666.1,ENST00000467908.1,ENST00000343528.6,ENST00000472777.1,ENST00000291565.4	chr21	45161547:45161652:45163604:45163688:45165959:45166006,	45163605	45163688	45163648	45163649	Frame_Shift_Del	TG	-	p.97_97del
KIRC	TCGA-CZ-5459-01	PDXK	ENST00000398085.3	chr21	45161547:45161652:45163549:45163688:45165959:45166006,	45163550	45163688	45163648	45163649	Frame_Shift_Del	TG	-	p.97_97del
KIRC	TCGA-AK-3455-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188204	10188204	Frame_Shift_Del	T	-	p.L116fs
KIRC	TCGA-AK-3455-01	SAMHD1	ENST00000262878.4	chr20	35559162:35559278:35563431:35563592:35569441:35569514,	35563432	35563592	35563478	35563478	Frame_Shift_Del	A	-	p.Y155fs
KIRC	TCGA-CW-5587-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230655839:230655967:230656581:230656781:230656868:230656942,	230656582	230656781	230656670	230656671	Frame_Shift_Ins	-	A	p.I1368fs
KIRC	TCGA-CW-5587-01	PARN	ENST00000569444.1	chr16	14687157:14687235:14693760:14693817:14698002:14698083,14687157:14687235:14693760:14693817:14700340:14700383,	14693761	14693817	14693777	14693778	Frame_Shift_Ins	-	A	p.H275fs
KIRC	TCGA-CW-5587-01	BIRC3	ENST00000263464.3,ENST00000532808.1	chr11	102201729:102201972:102206696:102206951:102207490:102207532,	102206697	102206951	102206888	102206889	Frame_Shift_Ins	-	C	p.A506fs
KIRC	TCGA-CW-5587-01	ECI2	ENST00000465828.1,ENST00000380120.2,ENST00000478266.2,ENST00000496241.2,ENST00000413766.2,ENST00000361538.2,ENST00000380125.2,ENST00000380118.3,ENST00000464057.1	chr6	4115941:4116263:4117541:4117685:4119419:4119509,	4117542	4117685	4117609	4117609	Frame_Shift_Del	A	-	p.F321fs
KIRC	TCGA-CW-5587-01	ECI2	ENST00000464583.1	chr6	4115941:4116263:4117541:4119509:4125483:4125604,	4117542	4119509	4117609	4117609	Frame_Shift_Del	A	-	p.F321fs
KIRC	TCGA-CW-5587-01	TROAP	ENST00000547923.1,ENST00000551245.1,ENST00000257909.3	chr12	49723177:49723237:49723639:49723774:49723927:49724257,	49723640	49723774	49723705	49723706	Frame_Shift_Ins	-	C	p.K410fs
KIRC	TCGA-CW-5587-01	PDHA1	ENST00000540249.1	chrX	19371199:19371291:19373466:19373622:19373803:19373875,	19373467	19373622	19373483	19373484	Frame_Shift_Ins	-	T	p.A245fs
KIRC	TCGA-CW-5587-01	GOLT1A	ENST00000308302.3	chr1	204168327:204168386:204170760:204170939:204172023:204172115,	204170761	204170939	204170892	204170892	Frame_Shift_Del	G	-	p.F56fs
KIRC	TCGA-BP-5183-01	ITGA9	ENST00000264741.5	chr3	37818882:37819008:37821392:37821512:37826467:37826569,	37821393	37821512	37821430	37821442	Frame_Shift_Del	ACTGTAACTTTAG	-	p.902_906del
KIRC	TCGA-BP-5183-01	ITSN1	ENST00000399367.3,ENST00000399326.3,ENST00000381285.4,ENST00000381318.3	chr21	35247663:35247825:35254546:35254759:35255853:35255975,	35254547	35254759	35254745	35254745	Frame_Shift_Del	A	-	p.Y1513X
KIRC	TCGA-BP-5183-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188248	10188248	Frame_Shift_Del	A	-	p.V130fs
KIRC	TCGA-BP-5183-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235949909	235949910	Frame_Shift_Del	CA	-	p.165_166del
KIRC	TCGA-BP-5183-01	VWA2	ENST00000603594.1,ENST00000298715.4,ENST00000392982.3	chr10	116037672:116037806:116038477:116038610:116042274:116042330,	116038478	116038610	116038497	116038497	Frame_Shift_Del	C	-	p.H240fs
KIRC	TCGA-CJ-4916-01	POMT2	ENST00000556326.1,ENST00000553863.1,ENST00000452340.3,ENST00000261534.4	chr14	77765866:77765904:77767432:77767592:77769177:77769286,	77767433	77767592	77767444	77767445	Frame_Shift_Ins	-	G	p.S269fs
KIRC	TCGA-B2-3923-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623705	623706	Frame_Shift_Ins	-	C	p.E216fs
KIRC	TCGA-B2-3923-01	PTPRM	ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	7906502:7906581:7926565:7926681:7949178:7949353,	7926566	7926681	7926652	7926656	Frame_Shift_Del	ACCGT	-	p.211_213del
KIRC	TCGA-B2-3923-01	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505302	56505302	Frame_Shift_Del	A	-	p.K369fs
KIRC	TCGA-B2-3923-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54125437:54125491:54127017:54127154:54128486:54128696,	54127018	54127154	54127105	54127105	Frame_Shift_Del	T	-	p.N1112fs
KIRC	TCGA-CZ-5468-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389808	11389814	Frame_Shift_Del	GGCAAAG	-	p.146_148del
KIRC	TCGA-CZ-5461-01	PARP1	ENST00000366794.5	chr1	226558134:226558218:226561926:226562055:226564808:226565004,	226561927	226562055	226561996	226561997	Frame_Shift_Ins	-	T	p.K667fs
KIRC	TCGA-B8-4151-01	SFSWAP	ENST00000535236.1,ENST00000538548.1,ENST00000541286.1,ENST00000261674.4	chr12	132209949:132210175:132211484:132211597:132212837:132212973,	132211485	132211597	132211499	132211506	Frame_Shift_Del	TCTGACAA	-	p.282_285del
KIRC	TCGA-BP-5185-01	ARHGEF5	ENST00000471847.2,ENST00000056217.5	chr7	144071824:144071982:144072606:144072768:144074212:144074283,	144072607	144072768	144072710	144072710	Frame_Shift_Del	T	-	p.L1467fs
KIRC	TCGA-BP-5185-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256041	9256042	Frame_Shift_Del	AA	-	p.925_926del
KIRC	TCGA-B0-5691-01	LMO7	ENST00000447038.1	chr13	76378455:76378677:76381615:76382335:76383289:76383319,	76381616	76382335	76381790	76381791	Frame_Shift_Ins	-	T	p.D224fs
KIRC	TCGA-B0-5691-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67167031:67167136:67168159:67168390:67168538:67168670,	67168160	67168390	67168338	67168339	Frame_Shift_Ins	-	AC	p.G91fs
KIRC	TCGA-B0-5691-01	NDUFA4L2	ENST00000393825.1	chr12	57630375:57630464:57630811:57631118:57634461:57634475,	57630812	57631118	57630851	57630860	Frame_Shift_Del	AAGACTGGCT	-	p.4_7del
KIRC	TCGA-BP-4989-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188202	10188202	Frame_Shift_Del	C	-	p.H115fs
KIRC	TCGA-CJ-5682-01	PANK3	ENST00000239231.6	chr5	167990893:167991070:167993017:167993271:167995650:167996003,	167993018	167993271	167993043	167993044	Frame_Shift_Del	TG	-	p.204_204del
KIRC	TCGA-CJ-5682-01	ST14	ENST00000278742.5	chr11	130068841:130068964:130069845:130070032:130078304:130078579,	130069846	130070032	130069949	130069949	Frame_Shift_Del	G	-	p.Q637fs
KIRC	TCGA-CJ-5682-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276831	15276831	Frame_Shift_Del	C	-	p.E1812fs
KIRC	TCGA-B8-A54K-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000485535.1,ENST00000448774.2,ENST00000483676.1,ENST00000456774.1,ENST00000358536.4	chr3	48448433:48448498:48450736:48450884:48450978:48451127,	48450737	48450884	48450849	48450849	Frame_Shift_Del	T	-	p.N1992fs
KIRC	TCGA-A3-3370-01	AP4E1	ENST00000561393.1,ENST00000558439.1,ENST00000261842.5,ENST00000560508.1	chr15	51260459:51260574:51276218:51276342:51285566:51285822,	51276219	51276342	51276219	51276221	Frame_Shift_Del	TTC	-	p.656_656del
KIRC	TCGA-B0-4827-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439864	52439864	Frame_Shift_Del	T	-	p.E283fs
KIRC	TCGA-B0-4827-01	NFU1	ENST00000419370.1	chr2	69646669:69646736:69650713:69650849:69659033:69659137,69646669:69646736:69650713:69650849:69657035:69657153,	69650714	69650849	69650750	69650751	Frame_Shift_Ins	-	T	p.P89fs
KIRC	TCGA-CJ-4923-01	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133923678:133923778:133925291:133925510:133931620:133931770,	133925292	133925510	133925416	133925416	Frame_Shift_Del	C	-	p.D1428fs
KIRC	TCGA-CJ-4923-01	CLTC	ENST00000579456.1,ENST00000269122.3,ENST00000393043.1,ENST00000472651.1	chr17	57761266:57761346:57762416:57762587:57762947:57763169,	57762417	57762587	57762458	57762458	Frame_Shift_Del	T	-	p.N1492fs
KIRC	TCGA-CJ-4923-01	C4A	ENST00000428956.2,ENST00000498271.1,ENST00000537134.1	chr6	31951614:31951711:31951849:31951955:31952052:31952175,	31951850	31951955	31951899	31951899	Frame_Shift_Del	C	-	p.G285fs
KIRC	TCGA-CJ-4923-01	SESTD1	ENST00000440010.1,ENST00000435047.1,ENST00000428443.3	chr2	180016058:180016118:180036846:180036960:180041174:180041265,	180036847	180036960	180036930	180036930	Frame_Shift_Del	A	-	p.C96fs
KIRC	TCGA-A3-3385-01	ZSCAN21	ENST00000543588.1,ENST00000456748.2	chr7	99655320:99655513:99661410:99661602:99661705:99661878,	99661411	99661602	99661552	99661552	Frame_Shift_Del	A	-	p.E245fs
KIRC	TCGA-A3-3323-01	SERPINB13	ENST00000269489.5,ENST00000431153.1,ENST00000479842.1,ENST00000344731.5,ENST00000438844.1	chr18	61254662:61254684:61255884:61256066:61256889:61256946,	61255885	61256066	61255961	61255961	Frame_Shift_Del	G	-	p.K20fs
KIRC	TCGA-A3-3323-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169301	33169307	Frame_Shift_Del	CCATGGC	-	p.93_95del
KIRC	TCGA-B0-5709-01	CSAG1	ENST00000361211.5	chrX	151904458:151904518:151908770:151908928:151909138:151909515,	151908771	151908928	151908814	151908814	Frame_Shift_Del	G	-	p.R18fs
KIRC	TCGA-B0-5709-01	CSAG1	ENST00000370287.3,ENST00000452779.2	chrX	151904458:151904518:151908777:151908928:151909138:151909515,	151908778	151908928	151908814	151908814	Frame_Shift_Del	G	-	p.R18fs
KIRC	TCGA-B0-5709-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439161	52439161	Frame_Shift_Del	G	-	p.L361fs
KIRC	TCGA-B0-5709-01	PCBP4	ENST00000471622.1,ENST00000498822.1,ENST00000355852.2,ENST00000395014.2,ENST00000461554.1,ENST00000497390.1,ENST00000492809.1,ENST00000322099.7	chr3	51993382:51993427:51993592:51993667:51993910:51994039,	51993593	51993667	51993631	51993632	Frame_Shift_Ins	-	C	p.S185fs
KIRC	TCGA-B0-5709-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188268	10188268	Frame_Shift_Del	G	-	p.V137fs
KIRC	TCGA-B0-5709-01	ZNF346	ENST00000513587.1	chr5	176468126:176468230:176468778:176468871:176471389:176471534,176468126:176468230:176468778:176468871:176477751:176477893,176468126:176468230:176468778:176468871:176489058:176489152,	176468779	176468871	176468845	176468846	Frame_Shift_Ins	-	A	p.E116fs
KIRC	TCGA-B0-5709-01	NPEPPS	ENST00000527298.1,ENST00000527824.1	chr17	45646794:45646860:45656755:45656821:45660107:45660138,	45656756	45656821	45656769	45656769	Frame_Shift_Del	A	-	p.L144X
KIRC	TCGA-B0-5709-01	NPEPPS	ENST00000322157.4,ENST00000525007.1,ENST00000530173.1	chr17	45646794:45646860:45656755:45656877:45660107:45660138,	45656756	45656877	45656769	45656769	Frame_Shift_Del	A	-	p.L144X
KIRC	TCGA-A3-3358-01	NRDE2	ENST00000553409.1,ENST00000556189.1,ENST00000357904.3,ENST00000354366.3,ENST00000555903.1	chr14	90745405:90745477:90752697:90752836:90754560:90755229,	90752698	90752836	90752731	90752732	Frame_Shift_Ins	-	C	p.C1088fs
KIRC	TCGA-CJ-5678-01	YTHDC2	ENST00000161863.4	chr5	112896776:112896882:112899069:112899189:112899555:112899828,	112899070	112899189	112899158	112899165	Frame_Shift_Del	TAATTGTA	-	p.804_806del
KIRC	TCGA-CJ-5678-01	KLHL20	ENST00000546011.1,ENST00000209884.4	chr1	173735284:173735428:173743443:173743577:173744772:173744981,	173743444	173743577	173743518	173743525	Frame_Shift_Del	TGTTAGGA	-	p.457_459del
KIRC	TCGA-B0-5102-01	BRD7	ENST00000475877.1,ENST00000394689.2,ENST00000394688.3	chr16	50373886:50373997:50383933:50384078:50388335:50388390,	50383934	50384078	50383993	50383994	Frame_Shift_Ins	-	AC	p.F178fs
KIRC	TCGA-B0-5102-01	PAX4	ENST00000463946.1,ENST00000378740.2,ENST00000341640.2	chr7	127251588:127251730:127251998:127252054:127253075:127253145,	127251999	127252054	127252007	127252007	Frame_Shift_Del	A	-	p.S247fs
KIRC	TCGA-B0-4815-01	MAP4K5	ENST00000554990.1,ENST00000013125.4,ENST00000557124.1	chr14	50901681:50901783:50904193:50904252:50904611:50904726,	50904194	50904252	50904202	50904202	Frame_Shift_Del	C	-	p.C625fs
KIRC	TCGA-B0-5700-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99969109	99969110	Frame_Shift_Ins	-	A	p.S413fs
KIRC	TCGA-B0-5700-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510073	195510073	Frame_Shift_Del	G	-	p.A2793fs
KIRC	TCGA-B0-5700-01	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33549311:33549488:33561131:33561284:33576158:33577265,	33561132	33561284	33561227	33561228	Frame_Shift_Del	TC	-	p.1344_1344del
KIRC	TCGA-B0-5700-01	TFDP1	ENST00000375370.5,ENST00000538138.1	chr13	114290291:114290443:114290848:114291015:114292132:114292199,	114290849	114291015	114290929	114290939	Frame_Shift_Del	GCGGGCTGGAG	-	p.307_310del
KIRC	TCGA-B0-5700-01	LRCH4	ENST00000467201.1	chr7	100174524:100174628:100174708:100175012:100175119:100175175,	100174709	100175012	100174734	100174735	Frame_Shift_Ins	-	G	p.A447fs
KIRC	TCGA-B0-5700-01	LRCH4	ENST00000485071.1,ENST00000497245.1,ENST00000310300.6	chr7	100174524:100174628:100174708:100174777:100174895:100175012,	100174709	100174777	100174734	100174735	Frame_Shift_Ins	-	G	p.A447fs
KIRC	TCGA-A3-3311-01	DHX57	ENST00000460193.1,ENST00000295373.6,ENST00000457308.1	chr2	39074160:39074215:39075410:39075544:39081195:39081320,	39075411	39075544	39075474	39075474	Frame_Shift_Del	C	-	p.A701fs
KIRC	TCGA-A3-3311-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93202792:93202932:93205054:93205210:93206755:93206869,	93205055	93205210	93205170	93205170	Frame_Shift_Del	G	-	p.A695fs
KIRC	TCGA-CW-5589-01	BLVRA	ENST00000265523.4,ENST00000453612.1,ENST00000424330.1,ENST00000402924.1	chr7	43810736:43810769:43827502:43827624:43830847:43830967,	43827503	43827624	43827571	43827572	Frame_Shift_Del	GC	-	p.27_27del
KIRC	TCGA-CW-5589-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541903	187541904	Frame_Shift_Ins	-	T	p.S1946fs
KIRC	TCGA-CW-5589-01	CRIP3	ENST00000477866.1,ENST00000372569.3	chr6	43273535:43273613:43273804:43273862:43273956:43274051,	43273805	43273862	43273854	43273855	Frame_Shift_Ins	-	C	p.G168fs
KIRC	TCGA-CZ-5456-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53500969:53501081:53503827:53504097:53504294:53504575,	53503828	53504097	53504046	53504047	Frame_Shift_Ins	-	C	p.T732fs
KIRC	TCGA-CZ-5456-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85731039:85731497:85738544:85738738:85741237:85741339,	85738545	85738738	85738690	85738690	Frame_Shift_Del	T	-	p.K581fs
KIRC	TCGA-CZ-5456-01	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1,ENST00000542215.1	chrX	41203282:41203381:41203491:41203652:41204432:41204577,	41203492	41203652	41203543	41203544	Frame_Shift_Ins	-	T	p.I306fs
KIRC	TCGA-CZ-5456-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588818	52588818	Frame_Shift_Del	G	-	p.Q1404fs
KIRC	TCGA-A3-A6NJ-01	JSRP1	ENST00000586471.2,ENST00000593238.2,ENST00000300961.6	chr19	2253667:2253792:2254185:2254300:2254443:2254481,	2254186	2254300	2254294	2254295	Frame_Shift_Del	GA	-	p.52_52del
KIRC	TCGA-A3-A6NJ-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610601	52610602	Frame_Shift_Ins	-	AT	p.F1191fs
KIRC	TCGA-BP-4968-01	RNF213	ENST00000336301.6,ENST00000508628.2,ENST00000582970.1,ENST00000558116.1	chr17	78343301:78343471:78343567:78343667:78345673:78345785,	78343568	78343667	78343583	78343584	Frame_Shift_Ins	-	A	p.T4114fs
KIRC	TCGA-BP-5175-01	SLC22A8	ENST00000336232.2	chr11	62768191:62768295:62782097:62782455:62783200:62783282,	62782098	62782455	62782211	62782211	Frame_Shift_Del	G	-	p.L74fs
KIRC	TCGA-BP-5175-01	SLC22A8	ENST00000430500.2	chr11	62768191:62768295:62782097:62782434:62783200:62783282,	62782098	62782434	62782211	62782211	Frame_Shift_Del	G	-	p.L74fs
KIRC	TCGA-CZ-5985-01	ACSM5	ENST00000570305.1,ENST00000331849.4	chr16	20432595:20432723:20435237:20435391:20439109:20439189,	20435238	20435391	20435331	20435332	Frame_Shift_Ins	-	A	p.P287fs
KIRC	TCGA-CZ-5985-01	MYLK	ENST00000464489.1,ENST00000360304.3,ENST00000504946.1,ENST00000346322.5,ENST00000359169.1,ENST00000475616.1,ENST00000360772.3	chr3	123401070:123401157:123411581:123411698:123418866:123419852,	123411582	123411698	123411694	123411694	Frame_Shift_Del	T	-	p.L1152fs
KIRC	TCGA-BP-4964-01	PIGV	ENST00000374145.1,ENST00000078527.4	chr1	27117249:27117384:27120603:27121725:27124053:27124298,	27120604	27121725	27121228	27121228	Frame_Shift_Del	T	-	p.L234fs
KIRC	TCGA-BP-4964-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113168633	113168633	Frame_Shift_Del	C	-	p.E3083fs
KIRC	TCGA-B8-5549-01	AP3M2	ENST00000521280.1	chr8	42010602:42010623:42015458:42015630:42019798:42019936,	42015459	42015630	42015557	42015558	Frame_Shift_Ins	-	A	p.A124fs
KIRC	TCGA-B8-5549-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985915	36985915	Frame_Shift_Del	G	-	p.R878fs
KIRC	TCGA-A3-A6NN-01	NF1	ENST00000358273.4,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29587386:29587533:29588728:29588875:29592246:29592357,	29588729	29588875	29588752	29588752	Frame_Shift_Del	G	-	p.R1534fs
KIRC	TCGA-A3-A6NN-01	RPAIN	ENST00000405578.4,ENST00000381208.5,ENST00000381209.3	chr17	5326088:5326149:5329290:5329402:5335861:5335928,5326088:5326149:5329290:5329402:5331390:5331531,5326088:5326149:5329290:5329402:5329555:5329619,	5329291	5329402	5329389	5329390	Frame_Shift_Ins	-	T	p.P138fs
KIRC	TCGA-A3-A6NN-01	RPAIN	ENST00000570883.1,ENST00000571613.1	chr17	5326088:5326149:5329290:5329619:5335861:5335928,5326088:5326149:5329290:5329619:5331390:5331531,	5329291	5329619	5329389	5329390	Frame_Shift_Ins	-	T	p.P138fs
KIRC	TCGA-A3-A6NN-01	RPAIN	ENST00000573126.1	chr17	5326088:5326149:5329290:5331531:5335861:5335928,	5329291	5331531	5329389	5329390	Frame_Shift_Ins	-	T	p.P138fs
KIRC	TCGA-B0-5094-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588877	52588877	Frame_Shift_Del	G	-	p.P1384fs
KIRC	TCGA-B0-5094-01	RFC1	ENST00000381897.1,ENST00000418436.1,ENST00000349703.2	chr4	39324959:39325037:39328182:39328260:39329143:39329376,	39328183	39328260	39328257	39328258	Frame_Shift_Del	AA	-	p.190_190del
KIRC	TCGA-BP-5178-01	ARNTL2	ENST00000544915.1	chr12	27523100:27523163:27529278:27529320:27530373:27530436,27523100:27523163:27529278:27529320:27533179:27533337,27521268:27521345:27529278:27529320:27533179:27533337,	27529279	27529320	27529304	27529304	Frame_Shift_Del	A	-	p.V103fs
KIRC	TCGA-BP-5178-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914662	39914671	Frame_Shift_Del	CCTCCAGGTG	-	p.963_966del
KIRC	TCGA-BP-4976-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188299	10188306	Frame_Shift_Del	TTTGCCAA	-	p.147_150del
KIRC	TCGA-BP-4976-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944201	235944201	Frame_Shift_Del	A	-	p.M1727X
KIRC	TCGA-BP-4976-01	SEPHS1	ENST00000545675.1,ENST00000378614.4	chr10	13380715:13380808:13386757:13387028:13389999:13390030,	13386758	13387028	13386847	13386848	Frame_Shift_Ins	-	G	p.Q35fs
KIRC	TCGA-BP-4976-01	SH2D3A	ENST00000597687.1,ENST00000245908.6,ENST00000595681.1,ENST00000595369.1	chr19	6759604:6759681:6760648:6760998:6763690:6763827,	6760649	6760998	6760899	6760899	Frame_Shift_Del	C	-	p.A57fs
KIRC	TCGA-BP-4976-01	SNX14	ENST00000508980.1	chr6	86253322:86253478:86256833:86256944:86257034:86257115,	86256834	86256944	86256928	86256928	Frame_Shift_Del	A	-	p.L337fs
KIRC	TCGA-BP-4976-01	SNX14	ENST00000346348.3,ENST00000369627.2,ENST00000515216.1,ENST00000503491.1,ENST00000369635.2,ENST00000314673.3,ENST00000505648.1,ENST00000513865.1	chr6	86253322:86253478:86256829:86256944:86257034:86257115,	86256830	86256944	86256928	86256928	Frame_Shift_Del	A	-	p.L337fs
KIRC	TCGA-BP-5009-01	GALNT14	ENST00000481023.1,ENST00000486564.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31155032:31155060:31165066:31165170:31167723:31167782,	31165067	31165170	31165110	31165110	Frame_Shift_Del	C	-	p.K302fs
KIRC	TCGA-BP-5009-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000532765.1,ENST00000278616.4,ENST00000533690.1	chr11	108186549:108186638:108186737:108186840:108188099:108188194,	108186738	108186840	108186836	108186836	Frame_Shift_Del	T	-	p.I2065fs
KIRC	TCGA-BP-5009-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277376	114277376	Frame_Shift_Del	C	-	p.S2534fs
KIRC	TCGA-MW-A4EC-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985785	36985785	Frame_Shift_Del	G	-	p.R834fs
KIRC	TCGA-MW-A4EC-01	TBL1X	ENST00000380961.1,ENST00000407597.2,ENST00000536365.1,ENST00000424279.1,ENST00000217964.7	chrX	9659618:9659751:9660152:9660294:9661188:9661252,	9660153	9660294	9660202	9660202	Frame_Shift_Del	G	-	p.N266fs
KIRC	TCGA-B2-4102-01	TTBK2	ENST00000267890.6,ENST00000567840.1	chr15	43103885:43103978:43109229:43109295:43120125:43120230,	43109230	43109295	43109278	43109279	Frame_Shift_Ins	-	C	p.G185fs
KIRC	TCGA-B0-5085-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150769090:150769223:150771125:150771380:150771485:150771575,	150771126	150771380	150771368	150771369	Frame_Shift_Ins	-	T	p.F926fs
KIRC	TCGA-CJ-5672-01	MCOLN1	ENST00000601003.1,ENST00000394321.5	chr19	7587572:7587667:7589846:7590052:7591324:7591492,	7589847	7590052	7589957	7589957	Frame_Shift_Del	T	-	p.Y47fs
KIRC	TCGA-CJ-5672-01	AP1B1	ENST00000473606.1	chr22	29758989:29759095:29763195:29763256:29784412:29784518,	29763196	29763256	29763218	29763218	Frame_Shift_Del	T	-	p.Y6fs
KIRC	TCGA-CJ-5672-01	AP1B1	ENST00000317368.7,ENST00000356015.2,ENST00000432560.2,ENST00000357586.2	chr22	29758989:29759095:29763195:29763259:29784412:29784518,	29763196	29763259	29763218	29763218	Frame_Shift_Del	T	-	p.Y6fs
KIRC	TCGA-CJ-5672-01	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394690	86394690	Frame_Shift_Del	G	-	p.I76fs
KIRC	TCGA-CJ-5672-01	ROCK1	ENST00000399799.2	chr18	18572791:18572898:18586311:18586558:18586659:18586751,	18586312	18586558	18586509	18586515	Frame_Shift_Del	CTTACAG	-	p.561_563del
KIRC	TCGA-CJ-5672-01	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394692	86394711	Frame_Shift_Del	TGAAATCAACAAAGATGATT	-	p.77_83del
KIRC	TCGA-CJ-4636-01	FBXO27	ENST00000509137.2,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39517509:39517645:39521668:39521764:39521848:39521957,	39521669	39521764	39521691	39521692	Frame_Shift_Ins	-	C	p.I184fs
KIRC	TCGA-CJ-4636-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38420741:38421398:38430041:38430251:38433334:38433384,	38430042	38430251	38430132	38430133	Frame_Shift_Ins	-	G	p.P354fs
KIRC	TCGA-CJ-4636-01	SUZ12	ENST00000322652.5,ENST00000580398.1	chr17	30303539:30303633:30310017:30310123:30315338:30315516,	30310018	30310123	30310080	30310080	Frame_Shift_Del	T	-	p.I327X
KIRC	TCGA-CJ-4636-01	RPL37	ENST00000508493.1	chr5	40834299:40834367:40834572:40834708:40835284:40835314,	40834573	40834708	40834595	40834596	Frame_Shift_Ins	-	T	p.Y39_P40delinsX
KIRC	TCGA-G6-A8L7-01	HSD17B4	ENST00000513628.1,ENST00000515235.2,ENST00000442060.3,ENST00000510025.1,ENST00000509514.1,ENST00000522415.1,ENST00000256216.6,ENST00000504811.1,ENST00000414835.2,ENST00000515320.1,ENST00000509606.1	chr5	118865595:118865675:118866960:118867099:118872117:118872245,	118866961	118867099	118867087	118867087	Frame_Shift_Del	G	-	p.I685fs
KIRC	TCGA-G6-A8L7-01	EPS15	ENST00000371733.3,ENST00000371730.2	chr1	51912631:51912777:51913717:51913807:51926762:51926822,	51913718	51913807	51913788	51913795	Frame_Shift_Del	CAGTATAC	-	p.192_194del
KIRC	TCGA-G6-A8L7-01	SDR16C5	ENST00000303749.3,ENST00000522671.1	chr8	57221486:57221586:57224715:57224847:57228573:57228920,	57224716	57224847	57224833	57224833	Frame_Shift_Del	G	-	p.G117fs
KIRC	TCGA-BP-4963-01	SLC35A5	ENST00000261034.2	chr3	112292735:112292803:112299392:112299553:112300025:112300173,	112299393	112299553	112299395	112299396	Frame_Shift_Ins	-	A	p.R144fs
KIRC	TCGA-BP-4963-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125643	47125653	Frame_Shift_Del	AGTTTCTTGGG	-	p.1873_1876del
KIRC	TCGA-BP-4963-01	XRCC4	ENST00000282268.3,ENST00000542685.1,ENST00000338635.6,ENST00000509268.1,ENST00000511817.1,ENST00000396027.4	chr5	82406846:82407022:82491588:82491755:82499370:82499526,	82491589	82491755	82491622	82491623	Frame_Shift_Ins	-	A	p.E117fs
KIRC	TCGA-DV-5575-01	RAB11FIP3	ENST00000449879.1,ENST00000262305.4,ENST00000452814.1,ENST00000450428.1	chr16	541133:541268:546823:546859:553003:553063,538941:539000:546823:546859:553003:553063,	546824	546859	546822	546830	Frame_Shift_Del	GCACAGTCC	-	p.422_423del
KIRC	TCGA-B8-5163-01	XG	ENST00000426774.1,ENST00000419513.2,ENST00000503018.1	chrX	2670336:2670376:2688590:2688632:2692756:2692780,	2688591	2688632	2688594	2688594	Frame_Shift_Del	A	-	p.Q22fs
KIRC	TCGA-B0-5096-01	FN3K	ENST00000300784.7	chr17	80699186:80699269:80706730:80706853:80708292:80709073,	80706731	80706853	80706807	80706808	Frame_Shift_Ins	-	G	p.K182fs
KIRC	TCGA-BP-5194-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702549	52702555	Frame_Shift_Del	GGAAGTC	-	p.115_117del
KIRC	TCGA-BP-4986-01	CHUK	ENST00000370397.7	chr10	101960427:101960537:101961844:101961906:101964262:101964414,	101961845	101961906	101961883	101961883	Frame_Shift_Del	A	-	p.W511X
KIRC	TCGA-BP-4986-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000394997.1,ENST00000557538.1	chr14	62211430:62211531:62212408:62212535:62213651:62214190,	62212409	62212535	62212466	62212466	Frame_Shift_Del	C	-	p.K777fs
KIRC	TCGA-BP-4986-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188259	10188260	Frame_Shift_Ins	-	T	p.E134fs
KIRC	TCGA-A3-3376-01	TATDN3	ENST00000525569.1,ENST00000366973.4	chr1	212977960:212977993:212981077:212981190:212985568:212985670,212977960:212977993:212981077:212981190:212985589:212985624,212977960:212977993:212981077:212981190:212985592:212985670,	212981078	212981190	212981154	212981154	Frame_Shift_Del	C	-	p.F188fs
KIRC	TCGA-B8-5158-01	ZFP64	ENST00000477786.1,ENST00000361387.2,ENST00000371518.2	chr20	50714976:50715126:50776661:50776913:50781233:50781296,	50776662	50776913	50776871	50776871	Frame_Shift_Del	C	-	p.S185fs
KIRC	TCGA-CJ-5683-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19300184:19300329:19305349:19305525:19316414:19316515,	19305350	19305525	19305459	19305459	Frame_Shift_Del	A	-	p.Y474fs
KIRC	TCGA-CJ-5683-01	PRPF39	ENST00000554081.1,ENST00000477626.1,ENST00000554439.1,ENST00000424478.1,ENST00000355765.6,ENST00000554429.1	chr14	45576653:45576819:45577617:45577725:45578818:45578983,	45577618	45577725	45577646	45577667	Frame_Shift_Del	ATAGAATCATTGAGATTCATCA	-	p.311_318del
KIRC	TCGA-B8-5164-01	CTSE	ENST00000360218.2,ENST00000432969.2,ENST00000358184.2	chr1	206319100:206319218:206320200:206320319:206325237:206325437,	206320201	206320319	206320203	206320203	Frame_Shift_Del	A	-	p.K115fs
KIRC	TCGA-B8-5164-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545454	93545455	Frame_Shift_Del	AG	-	p.1395_1395del
KIRC	TCGA-A3-3308-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46751494	46751495	Frame_Shift_Ins	-	G	p.R345fs
KIRC	TCGA-A3-3308-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3308-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-A3-3308-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3308-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3308-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3308-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3308-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.Q289fs
KIRC	TCGA-A3-3308-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
KIRC	TCGA-A3-3308-01	CDH6	ENST00000514738.1,ENST00000265071.2	chr5	31302217:31302405:31305280:31305534:31313424:31313561,	31305281	31305534	31305299	31305302	Frame_Shift_Del	AAGA	-	p.KK340fs
KIRC	TCGA-A3-3308-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.Y2554fs
KIRC	TCGA-A3-3308-01	TRERF1	ENST00000541110.1	chr6	42227076:42227461:42230997:42231306:42232441:42232592,	42230998	42231306	42231008	42231009	Frame_Shift_Ins	-	G	p.H645fs
KIRC	TCGA-A3-3308-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3308-01	AKNA	ENST00000223791.3,ENST00000374079.4,ENST00000374075.5,ENST00000374088.3,ENST00000492875.1,ENST00000307564.4	chr9	117098444:117099586:117103812:117104005:117104288:117104405,	117103813	117104005	117103910	117103911	Frame_Shift_Ins	-	G	p.T1324fs
KIRC	TCGA-A3-3308-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
KIRC	TCGA-A3-3308-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559112	56559113	Frame_Shift_Ins	-	G	p.R1074fs
KIRC	TCGA-A3-3308-01	ZSCAN2	ENST00000540894.1	chr15	85147131:85147564:85163832:85165945:85166506:85166867,	85163833	85165945	85164518	85164519	Frame_Shift_Ins	-	A	p.R365fs
KIRC	TCGA-A3-3308-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
KIRC	TCGA-A3-3308-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3308-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621520	42621521	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-A3-3308-01	SULT2A1	ENST00000222002.3	chr19	48382292:48382387:48385340:48385467:48386833:48387042,	48385341	48385467	48385414	48385415	Frame_Shift_Ins	-	A	p.L133fs
KIRC	TCGA-A3-3308-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.G301fs
KIRC	TCGA-A3-3308-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
KIRC	TCGA-A3-3308-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67942263:67942488:67943467:67943685:67943786:67943963,	67943468	67943685	67943519	67943520	Frame_Shift_Ins	-	C	p.P871fs
KIRC	TCGA-A3-3308-01	CAPN1	ENST00000533129.1,ENST00000524773.1,ENST00000527323.1,ENST00000533820.1,ENST00000279247.6	chr11	64954685:64954769:64955425:64955511:64955884:64955959,	64955426	64955511	64955442	64955442	Frame_Shift_Del	A	-	p.Q287fs
KIRC	TCGA-A3-3313-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
KIRC	TCGA-A3-3313-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3313-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3313-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530505	150530506	Frame_Shift_Ins	-	G	p.LG754fs
KIRC	TCGA-A3-3313-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.IP160fs
KIRC	TCGA-A3-3313-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255497	156255498	Frame_Shift_Ins	-	C	p.IP160fs
KIRC	TCGA-A3-3313-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.IP160fs
KIRC	TCGA-A3-3313-01	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1,ENST00000461616.1,ENST00000483944.1	chr3	124810282:124810400:124810944:124811042:124826324:124826421,	124810945	124811042	124810981	124810982	Frame_Shift_Ins	-	T	p.Y618fs
KIRC	TCGA-A3-3313-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877785	150877786	Frame_Shift_Ins	-	C	p.A335fs
KIRC	TCGA-A3-3313-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.T1044fs
KIRC	TCGA-A3-3313-01	SNX14	ENST00000418862.1	chr6	86217724:86217777:86223517:86223613:86223787:86223952,86217724:86217777:86223517:86223613:86224223:86224331,	86223518	86223613	86223568	86223568	Frame_Shift_Del	T	-	p.K868fs
KIRC	TCGA-A3-3313-01	GUSB	ENST00000304895.4,ENST00000447929.1,ENST00000466883.1,ENST00000345660.6,ENST00000421103.1,ENST00000430730.1	chr7	65425687:65426050:65429309:65429445:65432717:65432894,	65429310	65429445	65429390	65429396	Frame_Shift_Del	TGGTACT	-	p.QYH568fs
KIRC	TCGA-A3-3313-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459489	100459490	Frame_Shift_Ins	-	G	p.R556fs
KIRC	TCGA-A3-3313-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856125	100856126	Frame_Shift_Ins	-	C	p.A293fs
KIRC	TCGA-A3-3313-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103339969:103340124:103341317:103341428:103341510:103341627,	103341318	103341428	103341320	103341324	Frame_Shift_Del	TGTTA	-	p.NNK440fs
KIRC	TCGA-A3-3313-01	UBAP1	ENST00000543944.1	chr9	34234213:34234338:34241182:34242106:34249776:34249959,34220905:34220946:34241182:34242106:34249776:34249959,	34241183	34242106	34241784	34241785	Frame_Shift_Ins	-	C	p.P254fs
KIRC	TCGA-A3-3313-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-A3-3313-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1,ENST00000277537.6	chr9	139342535:139342613:139345707:139345860:139347879:139347962,	139345708	139345860	139345822	139345823	Frame_Shift_Ins	-	G	p.R2066fs
KIRC	TCGA-A3-3313-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.R314fs
KIRC	TCGA-A3-3313-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
KIRC	TCGA-A3-3313-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906659	103906660	Frame_Shift_Ins	-	C	p.P1304fs
KIRC	TCGA-A3-3313-01	SAAL1	ENST00000529318.1,ENST00000524803.1,ENST00000300013.4,ENST00000533851.1,ENST00000530736.1,ENST00000530180.1,ENST00000531581.1	chr11	18118317:18118401:18124779:18124893:18127453:18127566,	18124780	18124893	18124827	18124828	Frame_Shift_Ins	-	T	p.N68fs
KIRC	TCGA-A3-3313-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282886	47282887	Frame_Shift_Ins	-	C	p.SP198fs
KIRC	TCGA-A3-3313-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-A3-3313-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107925601:107925682:107940822:107940916:107943058:107943189,	107940823	107940916	107940858	107940859	Frame_Shift_Del	AT	-	p.SF272fs
KIRC	TCGA-A3-3313-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340958	41340959	Frame_Shift_Ins	-	G	p.PK121fs
KIRC	TCGA-A3-3313-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846337	20846338	Frame_Shift_Ins	-	C	p.C1856fs
KIRC	TCGA-A3-3313-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.FP623fs
KIRC	TCGA-A3-3313-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
KIRC	TCGA-A3-3313-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939869	40939870	Frame_Shift_Ins	-	G	p.PG605fs
KIRC	TCGA-A3-3313-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610700	41610701	Frame_Shift_Ins	-	G	p.T134fs
KIRC	TCGA-A3-3313-01	EPB41L3	ENST00000540638.2,ENST00000400111.3,ENST00000545076.1,ENST00000542652.2	chr18	5396199:5396331:5397056:5397425:5406775:5406967,	5397057	5397425	5397069	5397069	Frame_Shift_Del	T	-	p.K943fs
KIRC	TCGA-A3-3313-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3313-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.E297fs
KIRC	TCGA-A3-3313-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.G301fs
KIRC	TCGA-A3-3313-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050025	44050026	Frame_Shift_Ins	-	C	p.P346fs
KIRC	TCGA-A3-3313-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
KIRC	TCGA-A3-3313-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
KIRC	TCGA-A3-3316-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
KIRC	TCGA-A3-3316-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3316-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-A3-3316-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3316-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934780	153934781	Frame_Shift_Ins	-	C	p.G78fs
KIRC	TCGA-A3-3316-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.Q289fs
KIRC	TCGA-A3-3316-01	AMMECR1L	ENST00000272647.5,ENST00000393001.1	chr2	128627027:128627118:128628387:128628502:128628822:128628933,	128628388	128628502	128628473	128628474	Frame_Shift_Ins	-	G	p.D183fs
KIRC	TCGA-A3-3316-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48604560:48604623:48605006:48605069:48605142:48605196,	48605007	48605069	48605038	48605039	Frame_Shift_Ins	-	C	p.P2672fs
KIRC	TCGA-A3-3316-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163105	163106	Frame_Shift_Ins	-	C	p.T617fs
KIRC	TCGA-A3-3316-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.Y2554fs
KIRC	TCGA-A3-3316-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3316-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3316-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173277	126173278	Frame_Shift_Ins	-	G	p.H720fs
KIRC	TCGA-A3-3316-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
KIRC	TCGA-A3-3316-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
KIRC	TCGA-A3-3316-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
KIRC	TCGA-A3-3316-01	MS4A15	ENST00000429322.2	chr11	60524480:60524531:60531178:60531431:60535005:60535128,60524480:60524531:60531178:60531431:60535039:60535128,	60531179	60531431	60531345	60531346	Frame_Shift_Ins	-	G	p.G47fs
KIRC	TCGA-A3-3316-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
KIRC	TCGA-A3-3316-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-A3-3316-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.R164fs
KIRC	TCGA-A3-3316-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.R200fs
KIRC	TCGA-A3-3316-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546603	21546604	Frame_Shift_Ins	-	G	p.EG734fs
KIRC	TCGA-A3-3316-01	ACSF3	ENST00000537290.1	chr16	89165118:89165171:89167069:89167755:89169011:89169056,89160290:89160404:89167069:89167755:89169011:89169056,89160311:89160400:89167069:89167755:89169011:89169056,	89167070	89167755	89167125	89167125	Frame_Shift_Del	G	-	p.L12fs
KIRC	TCGA-A3-3316-01	PHF12	ENST00000332830.4,ENST00000589176.1	chr17	27233122:27233535:27233873:27234012:27234607:27234690,	27233874	27234012	27233908	27233909	Frame_Shift_Ins	-	G	p.Q882fs
KIRC	TCGA-A3-3316-01	UTP6	ENST00000484661.1,ENST00000261708.4,ENST00000477128.1	chr17	30193673:30193734:30195064:30195131:30200396:30200414,30192384:30192457:30195064:30195131:30200396:30200414,	30195065	30195131	30195101	30195101	Frame_Shift_Del	G	-	p.D509fs
KIRC	TCGA-A3-3316-01	KCNH4	ENST00000607371.1	chr17	40308912:40309136:40311752:40312453:40314265:40314339,	40311753	40312453	40312168	40312169	Frame_Shift_Ins	-	G	p.P982fs
KIRC	TCGA-A3-3316-01	KCNH4	ENST00000264661.3	chr17	40308912:40309136:40311748:40312453:40314265:40314339,	40311749	40312453	40312168	40312169	Frame_Shift_Ins	-	G	p.P982fs
KIRC	TCGA-A3-3316-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755179	6755180	Frame_Shift_Ins	-	G	p.D215fs
KIRC	TCGA-A3-3316-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.E297fs
KIRC	TCGA-A3-3316-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.G301fs
KIRC	TCGA-A3-3316-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188296	10188296	Frame_Shift_Del	A	-	p.I147fs
KIRC	TCGA-A3-3316-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588839	52588839	Frame_Shift_Del	G	-	p.L1417fs
KIRC	TCGA-A3-3317-01	NDUFS1	ENST00000456284.1	chr2	207013743:207013820:207014503:207014649:207017142:207017234,	207014504	207014649	207014550	207014551	Frame_Shift_Ins	-	T	p.N84fs
KIRC	TCGA-A3-3317-01	NDUFS1	ENST00000449699.1,ENST00000454195.1,ENST00000455934.2,ENST00000233190.6	chr2	207013743:207013820:207014541:207014649:207017142:207017234,	207014542	207014649	207014550	207014551	Frame_Shift_Ins	-	T	p.N84fs
KIRC	TCGA-A3-3317-01	DOK7	ENST00000340083.5,ENST00000389653.2	chr4	3478068:3478269:3487265:3487385:3491403:3491523,	3487266	3487385	3487325	3487325	Frame_Shift_Del	T	-	p.C198fs
KIRC	TCGA-A3-3317-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-A3-3317-01	ASPSCR1	ENST00000306729.7	chr17	79970106:79970159:79972950:79973232:79974351:79974403,	79972951	79973232	79973083	79973084	Frame_Shift_Ins	-	G	p.G496fs
KIRC	TCGA-A3-3319-01	PABPC4	ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000437136.1,ENST00000372862.3	chr1	40027744:40027875:40027994:40028088:40029285:40029401,	40027995	40028088	40028015	40028016	Frame_Shift_Ins	-	G	p.G565fs
KIRC	TCGA-A3-3319-01	PABPC4	ENST00000421687.2	chr1	40027744:40027875:40027994:40028052:40029285:40029401,	40027995	40028052	40028015	40028016	Frame_Shift_Ins	-	G	p.G565fs
KIRC	TCGA-A3-3319-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3319-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3319-01	S100A2	ENST00000497140.1	chr1	153534052:153534067:153536209:153536329:153537981:153538018,	153536210	153536329	153536226	153536226	Frame_Shift_Del	A	-	p.L42fs
KIRC	TCGA-A3-3319-01	S100A2	ENST00000368709.1	chr1	153533824:153534067:153536209:153536363:153539177:153539231,	153536210	153536363	153536226	153536226	Frame_Shift_Del	A	-	p.L42fs
KIRC	TCGA-A3-3319-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.S54fs
KIRC	TCGA-A3-3319-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3319-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3319-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-A3-3319-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-A3-3319-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
KIRC	TCGA-A3-3319-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.Y2554fs
KIRC	TCGA-A3-3319-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-A3-3319-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-A3-3319-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42237162	42237163	Frame_Shift_Ins	-	G	p.L56fs
KIRC	TCGA-A3-3319-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
KIRC	TCGA-A3-3319-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.R314fs
KIRC	TCGA-A3-3319-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
KIRC	TCGA-A3-3319-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-A3-3319-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-A3-3319-01	NUMA1	ENST00000393695.3,ENST00000540843.1,ENST00000351960.6,ENST00000537905.1,ENST00000537217.1,ENST00000535087.1,ENST00000366394.3	chr11	71740250:71740336:71746947:71747021:71752004:71752132,71740250:71740336:71746947:71747021:71780887:71780957,	71746948	71747021	71746964	71746965	Frame_Shift_Ins	-	C	p.C9fs
KIRC	TCGA-A3-3319-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898183	53898184	Frame_Shift_Ins	-	C	p.T142fs
KIRC	TCGA-A3-3319-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
KIRC	TCGA-A3-3319-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073265	3073266	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-A3-3319-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073265	3073266	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-A3-3319-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073265	3073266	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-A3-3319-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073265	3073266	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-A3-3319-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
KIRC	TCGA-A3-3319-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3319-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210634	37210635	Frame_Shift_Del	GT	-	p.SY305fs
KIRC	TCGA-A3-3319-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621520	42621521	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-A3-3319-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-A3-3319-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
KIRC	TCGA-A3-3319-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
KIRC	TCGA-A3-3319-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289119	31289120	Frame_Shift_Ins	-	C	p.P627fs
KIRC	TCGA-A3-3319-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
KIRC	TCGA-A3-3319-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.HP25fs
KIRC	TCGA-A3-3319-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000479930.1,ENST00000354749.2,ENST00000418766.1,ENST00000399010.1,ENST00000355666.1,ENST00000399017.2	chr21	38460132:38460175:38460495:38460646:38461098:38461186,	38460496	38460646	38460511	38460517	Frame_Shift_Del	GTATATG	-	p.SIW68fs
KIRC	TCGA-A3-3320-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3320-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889836	100889837	Frame_Shift_Ins	-	C	p.T123fs
KIRC	TCGA-A3-3320-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3320-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3320-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3320-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3320-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-A3-3320-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
KIRC	TCGA-A3-3320-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-A3-3320-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.Q1005fs
KIRC	TCGA-A3-3320-01	PTPN5	ENST00000477854.1,ENST00000396170.1,ENST00000358540.2,ENST00000396168.1,ENST00000396171.4,ENST00000396167.2	chr11	18750999:18751113:18751204:18751365:18754138:18754249,	18751205	18751365	18751285	18751286	Frame_Shift_Ins	-	G	p.P438fs
KIRC	TCGA-A3-3320-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
KIRC	TCGA-A3-3320-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
KIRC	TCGA-A3-3320-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-A3-3320-01	E2F7	ENST00000322886.7	chr12	77415027:77417965:77419337:77419762:77421662:77421918,	77419338	77419762	77419716	77419717	Frame_Shift_Ins	-	G	p.H729fs
KIRC	TCGA-A3-3320-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546603	21546604	Frame_Shift_Ins	-	G	p.EG734fs
KIRC	TCGA-A3-3320-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.FP623fs
KIRC	TCGA-A3-3320-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875737	4875738	Frame_Shift_Ins	-	G	p.R865fs
KIRC	TCGA-A3-3320-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755179	6755180	Frame_Shift_Ins	-	G	p.D215fs
KIRC	TCGA-A3-3320-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3320-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621520	42621521	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-A3-3320-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.E297fs
KIRC	TCGA-A3-3320-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
KIRC	TCGA-A3-3320-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
KIRC	TCGA-A3-3320-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863767	47863768	Frame_Shift_Ins	-	C	p.P3249fs
KIRC	TCGA-A3-3320-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
KIRC	TCGA-A3-3320-01	PHF10	ENST00000366780.4,ENST00000339209.4	chr6	170112481:170112635:170114828:170114938:170115803:170115938,	170114829	170114938	170114904	170114904	Frame_Shift_Del	A	-	p.L243fs
KIRC	TCGA-A3-3320-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851664	71851665	Frame_Shift_Ins	-	G	p.R144fs
KIRC	TCGA-A3-3320-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-A3-3320-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-A3-3322-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3322-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610585	52610585	Frame_Shift_Del	T	-	p.E1190fs
KIRC	TCGA-A3-3322-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
KIRC	TCGA-A3-3322-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844479	123844479	Frame_Shift_Del	C	-	p.P822fs
KIRC	TCGA-A3-3322-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-A3-3322-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.T539fs
KIRC	TCGA-A3-3322-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875737	4875738	Frame_Shift_Ins	-	G	p.R865fs
KIRC	TCGA-A3-3322-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610700	41610701	Frame_Shift_Ins	-	G	p.T134fs
KIRC	TCGA-A3-3322-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3322-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.L333fs
KIRC	TCGA-A3-3322-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155547	129155548	Frame_Shift_Ins	-	T	p.KK313fs
KIRC	TCGA-A3-3322-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155547	129155548	Frame_Shift_Ins	-	T	p.KK313fs
KIRC	TCGA-A3-3323-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169301	33169307	Frame_Shift_Del	CCATGGC	-	p.SHG93fs
KIRC	TCGA-A3-3323-01	SERPINB13	ENST00000269489.5,ENST00000431153.1,ENST00000479842.1,ENST00000344731.5,ENST00000438844.1	chr18	61254662:61254684:61255884:61256066:61256889:61256946,	61255885	61256066	61255961	61255961	Frame_Shift_Del	G	-	p.K21fs
KIRC	TCGA-A3-3326-01	EIF4G3	ENST00000544689.1	chr1	21231375:21231464:21267751:21267888:21267983:21268111,	21267752	21267888	21267791	21267791	Frame_Shift_Del	T	-	p.M29fs
KIRC	TCGA-A3-3326-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597379	52597379	Frame_Shift_Del	C	-	p.V1304fs
KIRC	TCGA-A3-3326-01	RPL10A	ENST00000467020.1	chr6	35436578:35436650:35436723:35437306:35437955:35438128,	35436724	35437306	35437244	35437247	Frame_Shift_Del	CCCA	-	p.PH83fs
KIRC	TCGA-A3-3326-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000464112.1	chr6	35436723:35436804:35437157:35437306:35437955:35438128,	35437158	35437306	35437244	35437247	Frame_Shift_Del	CCCA	-	p.PH83fs
KIRC	TCGA-A3-3326-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-A3-3331-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559316	210559317	Frame_Shift_Ins	-	A	p.N808fs
KIRC	TCGA-A3-3331-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559316	210559317	Frame_Shift_Ins	-	A	p.N808fs
KIRC	TCGA-A3-3331-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496635	15496636	Frame_Shift_Ins	-	G	p.LG393fs
KIRC	TCGA-A3-3331-01	PRCP	ENST00000393399.2,ENST00000313010.3,ENST00000535099.1	chr11	82549544:82549616:82550302:82550467:82560090:82560260,	82550303	82550467	82550318	82550319	Frame_Shift_Del	CA	-	p.L357fs
KIRC	TCGA-A3-3331-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054754	72054755	Frame_Shift_Ins	-	C	p.GP55fs
KIRC	TCGA-A3-3331-01	TLE3	ENST00000558379.1,ENST00000442299.2,ENST00000539550.1,ENST00000559191.1,ENST00000559048.1,ENST00000557907.1,ENST00000557997.1	chr15	70347387:70347637:70348636:70348713:70349797:70349997,70347387:70347637:70348636:70348713:70349812:70349858,	70348637	70348713	70348690	70348691	Frame_Shift_Ins	-	G	p.H428fs
KIRC	TCGA-A3-3331-01	CPPED1	ENST00000381774.4	chr16	12758635:12758972:12798480:12798906:12875041:12875260,	12798481	12798906	12798724	12798725	Frame_Shift_Ins	-	G	p.P158fs
KIRC	TCGA-A3-3346-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
KIRC	TCGA-A3-3346-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3346-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.S54fs
KIRC	TCGA-A3-3346-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-A3-3346-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3346-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3346-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597506	52597506	Frame_Shift_Del	T	-	p.K1261fs
KIRC	TCGA-A3-3346-01	PBRM1	ENST00000394830.3	chr3	52595782:52595984:52597379:52597509:52598065:52598249,	52597380	52597509	52597506	52597506	Frame_Shift_Del	T	-	p.K1261fs
KIRC	TCGA-A3-3346-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984683	123984684	Frame_Shift_Ins	-	C	p.Q465fs
KIRC	TCGA-A3-3346-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.I1028fs
KIRC	TCGA-A3-3346-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3346-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3346-01	GATA4	ENST00000335135.4	chr8	11561730:11561813:11565364:11566437:11606427:11606594,	11565365	11566437	11565860	11565861	Frame_Shift_Ins	-	C	p.PP13fs
KIRC	TCGA-A3-3346-01	TMEM68	ENST00000520414.1,ENST00000334667.2,ENST00000522090.1,ENST00000434581.2	chr8	56668916:56668970:56675193:56675587:56676494:56676539,	56675194	56675587	56675226	56675227	Frame_Shift_Ins	-	T	p.S98fs
KIRC	TCGA-A3-3346-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3346-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481541	140481542	Frame_Shift_Ins	-	C	p.G79fs
KIRC	TCGA-A3-3346-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
KIRC	TCGA-A3-3346-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
KIRC	TCGA-A3-3346-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
KIRC	TCGA-A3-3346-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-A3-3346-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898183	53898184	Frame_Shift_Ins	-	C	p.T142fs
KIRC	TCGA-A3-3346-01	ERBB3	ENST00000415288.2,ENST00000450146.2,ENST00000553131.1,ENST00000551085.1,ENST00000267101.3	chr12	56490531:56490630:56490828:56491014:56491568:56491724,	56490829	56491014	56490961	56490962	Frame_Shift_Ins	-	G	p.G803fs
KIRC	TCGA-A3-3346-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-A3-3346-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-A3-3346-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.R200fs
KIRC	TCGA-A3-3346-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262563	25262564	Frame_Shift_Ins	-	G	p.G112fs
KIRC	TCGA-A3-3346-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939869	40939870	Frame_Shift_Ins	-	G	p.PG605fs
KIRC	TCGA-A3-3346-01	ZNF846	ENST00000588267.1	chr19	9863065:9863116:9868734:9869440:9872757:9872841,	9868735	9869440	9869150	9869150	Frame_Shift_Del	T	-	p.K201fs
KIRC	TCGA-A3-3346-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276860	15276861	Frame_Shift_Ins	-	C	p.S1802fs
KIRC	TCGA-A3-3346-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
KIRC	TCGA-A3-3346-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61833738	61833738	Frame_Shift_Del	T	-	p.Q518fs
KIRC	TCGA-A3-3346-01	PSMG1	ENST00000380900.2	chr21	40549360:40549497:40550374:40550573:40552210:40552362,	40550375	40550573	40550409	40550409	Frame_Shift_Del	T	-	p.E207fs
KIRC	TCGA-A3-3346-01	ARHGAP6	ENST00000534860.1,ENST00000303025.6,ENST00000380736.1,ENST00000337414.4	chrX	11160352:11160433:11162099:11162368:11174648:11174746,	11162100	11162368	11162200	11162201	Frame_Shift_Ins	-	C	p.V692fs
KIRC	TCGA-A3-3346-01	RSPO4	ENST00000217260.4	chr20	940896:941109:944577:944763:947816:947957,	944578	944763	944696	944697	Frame_Shift_Ins	-	G	p.C159fs
KIRC	TCGA-A3-3357-01	ZMPSTE24	ENST00000372759.3	chr1	40751596:40751701:40756525:40756669:40758116:40758293,	40756526	40756669	40756542	40756543	Frame_Shift_Ins	-	T	p.F359fs
KIRC	TCGA-A3-3357-01	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6	chr2	109102966:109103104:109104154:109104276:109106293:109106470,	109104155	109104276	109104197	109104197	Frame_Shift_Del	G	-	p.V1325fs
KIRC	TCGA-A3-3363-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889626	25889627	Frame_Shift_Ins	-	C	p.P200fs
KIRC	TCGA-A3-3363-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3363-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
KIRC	TCGA-A3-3363-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912845	159912846	Frame_Shift_Ins	-	G	p.A52fs
KIRC	TCGA-A3-3363-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
KIRC	TCGA-A3-3363-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652959	1652960	Frame_Shift_Ins	-	G	p.*865fs
KIRC	TCGA-A3-3363-01	CRIM1	ENST00000280527.2	chr2	36749234:36749456:36764494:36764689:36771518:36771641,	36764495	36764689	36764627	36764628	Frame_Shift_Ins	-	C	p.S854fs
KIRC	TCGA-A3-3363-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688968	60688969	Frame_Shift_Ins	-	G	p.P360fs
KIRC	TCGA-A3-3363-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688968	60688969	Frame_Shift_Ins	-	G	p.P360fs
KIRC	TCGA-A3-3363-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-A3-3363-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3363-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3363-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1,ENST00000341455.6	chr3	56593596:56593622:56597711:56598153:56600621:56600734,	56597712	56598153	56598017	56598018	Frame_Shift_Ins	-	A	p.QK136fs
KIRC	TCGA-A3-3363-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
KIRC	TCGA-A3-3363-01	BCL6	ENST00000419510.2,ENST00000232014.4,ENST00000406870.2	chr3	187443286:187443417:187446147:187446332:187446837:187447809,187444518:187444686:187446147:187446332:187446837:187447809,	187446148	187446332	187446269	187446270	Frame_Shift_Ins	-	G	p.Q473fs
KIRC	TCGA-A3-3363-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85750156:85750343:85752565:85752758:85758081:85758243,	85752566	85752758	85752731	85752731	Frame_Shift_Del	A	-	p.S202fs
KIRC	TCGA-A3-3363-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
KIRC	TCGA-A3-3363-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
KIRC	TCGA-A3-3363-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178989	33178990	Frame_Shift_Ins	-	G	p.RG170fs
KIRC	TCGA-A3-3363-01	TRERF1	ENST00000541110.1	chr6	42227076:42227461:42230997:42231306:42232441:42232592,	42230998	42231306	42231008	42231009	Frame_Shift_Ins	-	G	p.H645fs
KIRC	TCGA-A3-3363-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086745	144086746	Frame_Shift_Ins	-	C	p.P337fs
KIRC	TCGA-A3-3363-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3363-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3363-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459489	100459490	Frame_Shift_Ins	-	G	p.R556fs
KIRC	TCGA-A3-3363-01	TRIP6	ENST00000437505.1	chr7	100465015:100465228:100465729:100465855:100466116:100466488,	100465730	100465855	100465745	100465746	Frame_Shift_Ins	-	G	p.G85fs
KIRC	TCGA-A3-3363-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.AG101fs
KIRC	TCGA-A3-3363-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856125	100856126	Frame_Shift_Ins	-	C	p.A293fs
KIRC	TCGA-A3-3363-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173277	126173278	Frame_Shift_Ins	-	G	p.H720fs
KIRC	TCGA-A3-3363-01	BRAF	ENST00000288602.6,ENST00000497784.1	chr7	140508691:140508795:140534408:140534672:140549910:140550012,	140534409	140534672	140534611	140534612	Frame_Shift_Ins	-	G	p.I101fs
KIRC	TCGA-A3-3363-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3363-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-A3-3363-01	CNTRL	ENST00000373855.1,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123910949:123911139:123912447:123912761:123914762:123914971,	123912448	123912761	123912689	123912690	Frame_Shift_Ins	-	C	p.PP1297fs
KIRC	TCGA-A3-3363-01	ST6GALNAC6	ENST00000373141.1,ENST00000373144.3,ENST00000291839.5,ENST00000373146.1	chr9	130649032:130649067:130649762:130649870:130652934:130653322,130649032:130649067:130649762:130649870:130656790:130656908,130649032:130649067:130649762:130649870:130652915:130653322,	130649763	130649870	130649773	130649774	Frame_Shift_Ins	-	G	p.L268fs
KIRC	TCGA-A3-3363-01	LAMC3	ENST00000361069.4	chr9	133932315:133932534:133936421:133936610:133942346:133942592,	133936422	133936610	133936593	133936594	Frame_Shift_Ins	-	C	p.S777fs
KIRC	TCGA-A3-3363-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844355	123844356	Frame_Shift_Ins	-	C	p.HP780fs
KIRC	TCGA-A3-3363-01	FAM160A2	ENST00000265978.4,ENST00000524416.1,ENST00000449352.2	chr11	6244309:6244468:6244839:6245478:6245608:6245937,	6244840	6245478	6244882	6244883	Frame_Shift_Ins	-	ATGA	p.H245fs
KIRC	TCGA-A3-3363-01	TMX2	ENST00000529403.1,ENST00000278422.4	chr11	57505079:57505140:57505825:57505902:57506135:57506242,57505307:57505498:57505825:57505902:57506135:57506242,	57505826	57505902	57505845	57505846	Frame_Shift_Ins	-	C	p.NP128fs
KIRC	TCGA-A3-3363-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
KIRC	TCGA-A3-3363-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-A3-3363-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055104	66055105	Frame_Shift_Ins	-	G	p.A131fs
KIRC	TCGA-A3-3363-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770651	118770652	Frame_Shift_Ins	-	G	p.P1127fs
KIRC	TCGA-A3-3363-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.G265fs
KIRC	TCGA-A3-3363-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921305	57921306	Frame_Shift_Ins	-	C	p.P700fs
KIRC	TCGA-A3-3363-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546603	21546604	Frame_Shift_Ins	-	G	p.EG734fs
KIRC	TCGA-A3-3363-01	CDAN1	ENST00000562465.1	chr15	43018507:43018615:43019865:43019967:43020152:43020231,	43019866	43019967	43019889	43019890	Frame_Shift_Ins	-	C	p.A1009fs
KIRC	TCGA-A3-3363-01	CDAN1	ENST00000356231.3	chr15	43018507:43018615:43019818:43019967:43020152:43020231,	43019819	43019967	43019889	43019890	Frame_Shift_Ins	-	C	p.A1009fs
KIRC	TCGA-A3-3363-01	STOML1	ENST00000359750.4,ENST00000566081.1,ENST00000562453.1,ENST00000565240.1,ENST00000316900.5,ENST00000561656.1,ENST00000541638.1	chr15	74281132:74281143:74281448:74281598:74282691:74282798,	74281449	74281598	74281540	74281541	Frame_Shift_Ins	-	G	p.G100fs
KIRC	TCGA-A3-3363-01	STOML1	ENST00000567052.1	chr15	74281132:74281143:74281370:74281598:74282691:74282798,	74281371	74281598	74281540	74281541	Frame_Shift_Ins	-	G	p.G100fs
KIRC	TCGA-A3-3363-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000545570.1,ENST00000395532.4,ENST00000359285.5,ENST00000322610.8	chr16	28880597:28880704:28883100:28883304:28883510:28883722,	28883101	28883304	28883207	28883208	Frame_Shift_Ins	-	C	p.FP472fs
KIRC	TCGA-A3-3363-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
KIRC	TCGA-A3-3363-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
KIRC	TCGA-A3-3363-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
KIRC	TCGA-A3-3363-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610700	41610701	Frame_Shift_Ins	-	G	p.T134fs
KIRC	TCGA-A3-3363-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270149	66270150	Frame_Shift_Ins	-	C	p.T99fs
KIRC	TCGA-A3-3363-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
KIRC	TCGA-A3-3363-01	ADAMTSL5	ENST00000330475.4,ENST00000413997.2,ENST00000585700.1,ENST00000589839.1,ENST00000590440.1,ENST00000590562.1,ENST00000586272.1,ENST00000585804.1,ENST00000395467.2	chr19	1510148:1510257:1510366:1510427:1510637:1510729,	1510367	1510427	1510419	1510422	Frame_Shift_Del	CCAG	-	p.PG66fs
KIRC	TCGA-A3-3363-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590342	5590343	Frame_Shift_Ins	-	C	p.V824fs
KIRC	TCGA-A3-3363-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.E297fs
KIRC	TCGA-A3-3363-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.L333fs
KIRC	TCGA-A3-3363-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.G301fs
KIRC	TCGA-A3-3363-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-A3-3363-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050025	44050026	Frame_Shift_Ins	-	C	p.P346fs
KIRC	TCGA-A3-3363-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564715	42564716	Frame_Shift_Ins	-	G	p.A1943fs
KIRC	TCGA-A3-3363-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.HP25fs
KIRC	TCGA-A3-3363-01	PNCK	ENST00000488994.1,ENST00000370142.1,ENST00000466074.1,ENST00000393831.2,ENST00000447676.2,ENST00000370150.1,ENST00000340888.3,ENST00000370145.4	chrX	152936410:152936451:152936532:152936645:152936739:152936815,	152936533	152936645	152936626	152936627	Frame_Shift_Ins	-	G	p.L235fs
KIRC	TCGA-A3-3365-01	THEMIS2	ENST00000328928.7	chr1	28199068:28199176:28209023:28209554:28211805:28211928,28208481:28208588:28209023:28209554:28211805:28211928,28208481:28208636:28209023:28209554:28211805:28211928,	28209024	28209554	28209480	28209481	Frame_Shift_Ins	-	C	p.P549fs
KIRC	TCGA-A3-3365-01	THEMIS2	ENST00000373921.3	chr1	28206459:28206565:28208481:28209554:28211805:28211928,	28208482	28209554	28209480	28209481	Frame_Shift_Ins	-	C	p.P549fs
KIRC	TCGA-A3-3365-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3365-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-A3-3365-01	DENND2D	ENST00000369752.5	chr1	111741251:111741364:111742244:111742420:111746917:111747031,	111742245	111742420	111742337	111742338	Frame_Shift_Ins	-	C	p.A51fs
KIRC	TCGA-A3-3365-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3365-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-A3-3365-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3365-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3365-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573106	242573106	Frame_Shift_Del	T	-	p.R156fs
KIRC	TCGA-A3-3365-01	TCAIM	ENST00000342649.4,ENST00000412611.2,ENST00000417768.1,ENST00000417237.1	chr3	44409023:44409200:44434346:44434469:44437891:44437989,	44434347	44434469	44434435	44434436	Frame_Shift_Ins	-	T	p.T221fs
KIRC	TCGA-A3-3365-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-A3-3365-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-A3-3365-01	ERAP1	ENST00000296754.3,ENST00000443439.2	chr5	96132949:96133012:96136564:96136703:96139105:96139530,	96136565	96136703	96136598	96136598	Frame_Shift_Del	C	-	p.E210fs
KIRC	TCGA-A3-3365-01	TCP11	ENST00000445851.2,ENST00000311875.5,ENST00000394696.4	chr6	35096891:35096959:35108523:35108661:35108981:35109030,35107796:35108002:35108523:35108661:35108981:35109030,35103903:35103995:35108523:35108661:35108981:35109030,	35108524	35108661	35108559	35108560	Frame_Shift_Ins	-	G	p.G43fs
KIRC	TCGA-A3-3365-01	FOXP4	ENST00000373060.1,ENST00000409208.1,ENST00000307972.4,ENST00000373063.3,ENST00000373057.3	chr6	41562607:41562729:41564913:41564980:41565518:41565688,	41564914	41564980	41564917	41564921	Frame_Shift_Del	CCCCA	-	p.SPT554fs
KIRC	TCGA-A3-3365-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086745	144086746	Frame_Shift_Ins	-	C	p.P337fs
KIRC	TCGA-A3-3365-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3365-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3365-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3365-01	RGP1	ENST00000378078.4,ENST00000456972.2	chr9	35750654:35750738:35750836:35750986:35751262:35751334,	35750837	35750986	35750946	35750947	Frame_Shift_Ins	-	A	p.F150fs
KIRC	TCGA-A3-3365-01	GATA3	ENST00000379328.3	chr10	8097249:8097859:8100267:8100804:8105955:8106101,	8100268	8100804	8100451	8100452	Frame_Shift_Ins	-	G	p.W142fs
KIRC	TCGA-A3-3365-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906659	103906660	Frame_Shift_Ins	-	C	p.P1304fs
KIRC	TCGA-A3-3365-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
KIRC	TCGA-A3-3365-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055104	66055105	Frame_Shift_Ins	-	G	p.A131fs
KIRC	TCGA-A3-3365-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672710	77672711	Frame_Shift_Ins	-	CAAT	p.K2860fs
KIRC	TCGA-A3-3365-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
KIRC	TCGA-A3-3365-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878533	89878534	Frame_Shift_Ins	-	G	p.L96fs
KIRC	TCGA-A3-3365-01	ATXN3	ENST00000556315.1,ENST00000554592.1	chr14	92562436:92562481:92563017:92563182:92572872:92572906,92560089:92560175:92563017:92563182:92572872:92572906,92562436:92562478:92563017:92563182:92572872:92572906,	92563018	92563182	92563097	92563098	Frame_Shift_Del	GC	-	p.A37fs
KIRC	TCGA-A3-3365-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
KIRC	TCGA-A3-3365-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
KIRC	TCGA-A3-3365-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
KIRC	TCGA-A3-3365-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328258	40328259	Frame_Shift_Ins	-	C	p.S215fs
KIRC	TCGA-A3-3365-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-A3-3365-01	GSPT1	ENST00000565267.1,ENST00000568849.1,ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11981463:11981607:11984918:11984996:11988810:11988844,	11984919	11984996	11984971	11984971	Frame_Shift_Del	T	-	p.R242fs
KIRC	TCGA-A3-3365-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30862364:30862448:30863180:30863291:30864397:30864642,30862364:30862448:30863180:30863291:30864507:30864642,	30863181	30863291	30863250	30863251	Frame_Shift_Ins	-	C	p.A528fs
KIRC	TCGA-A3-3365-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-A3-3367-01	XRCC5	ENST00000460284.1,ENST00000392133.3,ENST00000392132.2	chr2	216983765:216983888:216986784:216986976:216990639:216990754,	216986785	216986976	216986866	216986890	Frame_Shift_Del	CTTTCCACTAAAAGGAATTACCGAA	-	p.SFPLKGITE191fs
KIRC	TCGA-A3-3367-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188262	10188263	Frame_Shift_Ins	-	TTTT	p.C136fs
KIRC	TCGA-A3-3367-01	GPHN	ENST00000478722.1,ENST00000544752.2,ENST00000459628.1	chr14	67389382:67389655:67390910:67391009:67431907:67432042,	67390911	67391009	67390942	67390943	Frame_Shift_Ins	-	C	p.D254fs
KIRC	TCGA-A3-3367-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-A3-3372-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889626	25889627	Frame_Shift_Ins	-	C	p.P200fs
KIRC	TCGA-A3-3372-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3372-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-A3-3372-01	PDE4DIP	ENST00000529945.1,ENST00000479408.2,ENST00000369354.3,ENST00000313382.9,ENST00000369349.3,ENST00000369359.4,ENST00000369351.3,ENST00000313431.9,ENST00000369356.4,ENST00000530740.1	chr1	144922186:144922279:144922518:144922638:144923689:144923821,	144922519	144922638	144922606	144922607	Frame_Shift_Del	AT	-	p.Y430fs
KIRC	TCGA-A3-3372-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934780	153934781	Frame_Shift_Ins	-	C	p.G78fs
KIRC	TCGA-A3-3372-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3372-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3372-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3372-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
KIRC	TCGA-A3-3372-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131566	231131567	Frame_Shift_Ins	-	A	p.E170fs
KIRC	TCGA-A3-3372-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-A3-3372-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3372-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3372-01	PPP1R7	ENST00000473017.1	chr2	242089910:242089962:242092897:242093019:242097221:242097277,	242092898	242093019	242092998	242092999	Frame_Shift_Ins	-	G	p.G54fs
KIRC	TCGA-A3-3372-01	PPP1R7	ENST00000498170.1,ENST00000406106.3,ENST00000234038.6,ENST00000439916.1,ENST00000404405.3,ENST00000407025.1	chr2	242089910:242089962:242092890:242093019:242097221:242097277,	242092891	242093019	242092998	242092999	Frame_Shift_Ins	-	G	p.G54fs
KIRC	TCGA-A3-3372-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975472	13975473	Frame_Shift_Ins	-	G	p.T121fs
KIRC	TCGA-A3-3372-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856125	100856126	Frame_Shift_Ins	-	C	p.A293fs
KIRC	TCGA-A3-3372-01	ZNF277	ENST00000457808.1,ENST00000361946.4,ENST00000361822.3,ENST00000450657.1	chr7	111936283:111936366:111958236:111958328:111967771:111967882,	111958237	111958328	111958300	111958300	Frame_Shift_Del	T	-	p.F177fs
KIRC	TCGA-A3-3372-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3372-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.Q1005fs
KIRC	TCGA-A3-3372-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
KIRC	TCGA-A3-3372-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
KIRC	TCGA-A3-3372-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
KIRC	TCGA-A3-3372-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425145	59425146	Frame_Shift_Ins	-	G	p.G160fs
KIRC	TCGA-A3-3372-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
KIRC	TCGA-A3-3372-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.R164fs
KIRC	TCGA-A3-3372-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559112	56559113	Frame_Shift_Ins	-	G	p.R1074fs
KIRC	TCGA-A3-3372-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
KIRC	TCGA-A3-3372-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.FP623fs
KIRC	TCGA-A3-3372-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3372-01	FXYD7	ENST00000588265.1	chr19	35639596:35639626:35642156:35642385:35642535:35642552,	35642157	35642385	35642251	35642251	Frame_Shift_Del	G	-	p.L52fs
KIRC	TCGA-A3-3372-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
KIRC	TCGA-A3-3372-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000477870.1,ENST00000483175.1,ENST00000373272.2	chr20	39797718:39797815:39798096:39798166:39798751:39798909,	39798097	39798166	39798133	39798134	Frame_Shift_Ins	-	G	p.G873fs
KIRC	TCGA-A3-3372-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
KIRC	TCGA-A3-3374-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800272	28800273	Frame_Shift_Ins	-	C	p.P344fs
KIRC	TCGA-A3-3374-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
KIRC	TCGA-A3-3374-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3374-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-A3-3374-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3374-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-A3-3374-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102336	168102337	Frame_Shift_Ins	-	G	p.G1479fs
KIRC	TCGA-A3-3374-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3374-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3374-01	QARS	ENST00000464962.1,ENST00000482468.1,ENST00000430182.1,ENST00000306125.6,ENST00000414533.1	chr3	49136776:49136864:49136942:49137080:49137193:49137286,	49136943	49137080	49137078	49137078	Frame_Shift_Del	C	-	p.R464fs
KIRC	TCGA-A3-3374-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
KIRC	TCGA-A3-3374-01	MSH3	ENST00000265081.6	chr5	80071512:80071577:80074538:80074655:80083383:80083491,	80074539	80074655	80074560	80074561	Frame_Shift_Ins	-	A	p.L781fs
KIRC	TCGA-A3-3374-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.Y2554fs
KIRC	TCGA-A3-3374-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.I1028fs
KIRC	TCGA-A3-3374-01	SCIN	ENST00000445618.2,ENST00000341757.5,ENST00000523729.1,ENST00000486980.1,ENST00000297029.5,ENST00000519209.1	chr7	12644138:12644288:12662425:12662518:12664634:12664677,	12662426	12662518	12662466	12662470	Frame_Shift_Del	ATGAT	-	p.DD236fs
KIRC	TCGA-A3-3374-01	PPP1R17	ENST00000342032.3	chr7	31732019:31732137:31735082:31735235:31736578:31736731,	31735083	31735235	31735178	31735179	Frame_Shift_Ins	-	A	p.K60fs
KIRC	TCGA-A3-3374-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3374-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3374-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.AG101fs
KIRC	TCGA-A3-3374-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3374-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-A3-3374-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481541	140481542	Frame_Shift_Ins	-	C	p.G79fs
KIRC	TCGA-A3-3374-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
KIRC	TCGA-A3-3374-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
KIRC	TCGA-A3-3374-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
KIRC	TCGA-A3-3374-01	TMX2	ENST00000529403.1,ENST00000278422.4	chr11	57505079:57505140:57505825:57505902:57506135:57506242,57505307:57505498:57505825:57505902:57506135:57506242,	57505826	57505902	57505845	57505846	Frame_Shift_Ins	-	C	p.NP128fs
KIRC	TCGA-A3-3374-01	STIP1	ENST00000537479.1,ENST00000305218.4,ENST00000538497.1,ENST00000358794.5,ENST00000538945.1	chr11	63964964:63965067:63965325:63965446:63967411:63967480,	63965326	63965446	63965370	63965370	Frame_Shift_Del	A	-	p.Y363fs
KIRC	TCGA-A3-3374-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.R164fs
KIRC	TCGA-A3-3374-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898183	53898184	Frame_Shift_Ins	-	C	p.T142fs
KIRC	TCGA-A3-3374-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.R200fs
KIRC	TCGA-A3-3374-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340958	41340959	Frame_Shift_Ins	-	G	p.PK121fs
KIRC	TCGA-A3-3374-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546603	21546604	Frame_Shift_Ins	-	G	p.EG734fs
KIRC	TCGA-A3-3374-01	HECTD1	ENST00000555915.1,ENST00000553957.1,ENST00000553700.1,ENST00000399332.1	chr14	31588975:31589072:31590588:31590711:31592125:31592253,31588975:31589072:31590588:31590711:31592119:31592253,	31590589	31590711	31590706	31590706	Frame_Shift_Del	C	-	p.L1707fs
KIRC	TCGA-A3-3374-01	RABEP2	ENST00000358201.4,ENST00000544477.1,ENST00000357573.6	chr16	28917339:28917517:28919929:28920085:28922208:28922307,	28919930	28920085	28919982	28919983	Frame_Shift_Ins	-	G	p.G398fs
KIRC	TCGA-A3-3374-01	EPG5	ENST00000592272.1,ENST00000590884.1,ENST00000587884.1,ENST00000282041.5,ENST00000585906.1	chr18	43458977:43459179:43460039:43460188:43462238:43462396,	43460040	43460188	43460063	43460064	Frame_Shift_Del	CA	-	p.SD1881fs
KIRC	TCGA-A3-3374-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590342	5590343	Frame_Shift_Ins	-	C	p.V824fs
KIRC	TCGA-A3-3374-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3374-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.E297fs
KIRC	TCGA-A3-3374-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.L333fs
KIRC	TCGA-A3-3374-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
KIRC	TCGA-A3-3374-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-A3-3374-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050025	44050026	Frame_Shift_Ins	-	C	p.P346fs
KIRC	TCGA-A3-3374-01	ARSF	ENST00000537104.1,ENST00000381127.1,ENST00000359361.2	chrX	3002283:3002707:3007536:3007673:3019127:3019262,	3007537	3007673	3007554	3007555	Frame_Shift_Ins	-	C	p.S283fs
KIRC	TCGA-A3-3374-01	AKAP8	ENST00000269701.2	chr19	15483661:15484151:15484596:15484876:15485413:15485446,	15484597	15484876	15484753	15484754	Frame_Shift_Ins	-	C	p.P72fs
KIRC	TCGA-A3-3374-01	MST1	ENST00000484673.1,ENST00000449682.2,ENST00000492370.1,ENST00000545762.1,ENST00000490966.1	chr3	49724988:49725101:49725182:49725330:49726030:49726091,	49725183	49725330	49725275	49725279	Frame_Shift_Del	GTGCT	-	p.QH49fs
KIRC	TCGA-A3-3376-01	TATDN3	ENST00000525569.1,ENST00000366973.4	chr1	212977960:212977993:212981077:212981190:212985568:212985670,212977960:212977993:212981077:212981190:212985589:212985624,212977960:212977993:212981077:212981190:212985592:212985670,	212981078	212981190	212981154	212981154	Frame_Shift_Del	C	-	p.F189fs
KIRC	TCGA-A3-3376-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-A3-3378-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3378-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-A3-3378-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.A377fs
KIRC	TCGA-A3-3378-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
KIRC	TCGA-A3-3378-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3378-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3378-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.Y2554fs
KIRC	TCGA-A3-3378-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837307	17837308	Frame_Shift_Ins	-	C	p.E319fs
KIRC	TCGA-A3-3378-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-A3-3378-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-A3-3378-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3378-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3378-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.AG101fs
KIRC	TCGA-A3-3378-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856125	100856126	Frame_Shift_Ins	-	C	p.A293fs
KIRC	TCGA-A3-3378-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3378-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
KIRC	TCGA-A3-3378-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.WG392fs
KIRC	TCGA-A3-3378-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-A3-3378-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.Q1005fs
KIRC	TCGA-A3-3378-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-A3-3378-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-A3-3378-01	FGFR2	ENST00000359354.2,ENST00000457416.2,ENST00000357555.5,ENST00000351936.6,ENST00000369061.4,ENST00000358487.5,ENST00000360144.3,ENST00000490349.1,ENST00000369060.4,ENST00000369058.3,ENST00000346997.2,ENST00000336553.6,ENST00000369056.1	chr10	123298105:123298229:123310803:123310973:123353222:123353343,123298105:123298229:123310803:123310973:123324015:123324093,	123310804	123310973	123310878	123310879	Frame_Shift_Ins	-	C	p.P184fs
KIRC	TCGA-A3-3378-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-A3-3378-01	VSIG2	ENST00000326621.5,ENST00000403470.1	chr11	124619603:124619762:124620609:124620817:124621318:124621476,	124620610	124620817	124620739	124620740	Frame_Shift_Ins	-	G	p.S100fs
KIRC	TCGA-A3-3378-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559112	56559113	Frame_Shift_Ins	-	G	p.R1074fs
KIRC	TCGA-A3-3378-01	ATP6V0A2	ENST00000330342.3,ENST00000545059.1,ENST00000504192.2	chr12	124221605:124221818:124228331:124228482:124228747:124228884,	124228332	124228482	124228388	124228389	Frame_Shift_Ins	-	C	p.TP365fs
KIRC	TCGA-A3-3378-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875737	4875738	Frame_Shift_Ins	-	G	p.R865fs
KIRC	TCGA-A3-3378-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270149	66270150	Frame_Shift_Ins	-	C	p.T99fs
KIRC	TCGA-A3-3378-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.L333fs
KIRC	TCGA-A3-3378-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050025	44050026	Frame_Shift_Ins	-	C	p.P346fs
KIRC	TCGA-A3-3378-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289119	31289120	Frame_Shift_Ins	-	C	p.P627fs
KIRC	TCGA-A3-3378-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.HP25fs
KIRC	TCGA-A3-3378-01	NMT2	ENST00000540259.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15151097:15151214:15151700:15151838:15154794:15154962,	15151701	15151838	15151779	15151779	Frame_Shift_Del	T	-	p.K466fs
KIRC	TCGA-A3-3378-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-A3-3380-01	THEMIS2	ENST00000328928.7	chr1	28199068:28199176:28209023:28209554:28211805:28211928,28208481:28208588:28209023:28209554:28211805:28211928,28208481:28208636:28209023:28209554:28211805:28211928,	28209024	28209554	28209480	28209481	Frame_Shift_Ins	-	C	p.P549fs
KIRC	TCGA-A3-3380-01	THEMIS2	ENST00000373921.3	chr1	28206459:28206565:28208481:28209554:28211805:28211928,	28208482	28209554	28209480	28209481	Frame_Shift_Ins	-	C	p.P549fs
KIRC	TCGA-A3-3380-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
KIRC	TCGA-A3-3380-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-A3-3380-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-A3-3380-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934780	153934781	Frame_Shift_Ins	-	C	p.G78fs
KIRC	TCGA-A3-3380-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.Q289fs
KIRC	TCGA-A3-3380-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
KIRC	TCGA-A3-3380-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54093883:54094017:54096512:54096675:54101475:54101631,	54096513	54096675	54096596	54096596	Frame_Shift_Del	T	-	p.H1727fs
KIRC	TCGA-A3-3380-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3380-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-A3-3380-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.T1044fs
KIRC	TCGA-A3-3380-01	AGPAT4	ENST00000457520.2,ENST00000366911.5,ENST00000320285.4	chr6	161557286:161557666:161560453:161560652:161567555:161567631,	161560454	161560652	161560588	161560589	Frame_Shift_Ins	-	G	p.A303fs
KIRC	TCGA-A3-3380-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000435201.1	chr7	73534912:73534968:73535221:73535379:73535468:73535631,	73535222	73535379	73535322	73535323	Frame_Shift_Ins	-	C	p.S605fs
KIRC	TCGA-A3-3380-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3380-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3380-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856125	100856126	Frame_Shift_Ins	-	C	p.A293fs
KIRC	TCGA-A3-3380-01	DMTN	ENST00000358242.3,ENST00000523300.1,ENST00000517305.1,ENST00000523623.1,ENST00000265800.5,ENST00000443491.2,ENST00000520174.1,ENST00000415253.1,ENST00000517804.1,ENST00000517418.1,ENST00000519850.1,ENST00000432128.1,ENST00000519907.1,ENST00000523782.2,ENST00000523266.1,ENST00000381470.3	chr8	21925037:21925193:21926526:21926571:21926929:21926967,	21926527	21926571	21926551	21926552	Frame_Shift_Ins	-	C	p.P92fs
KIRC	TCGA-A3-3380-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3380-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.Q1005fs
KIRC	TCGA-A3-3380-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
KIRC	TCGA-A3-3380-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-A3-3380-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-A3-3380-01	PSD	ENST00000406432.1,ENST00000020673.5	chr10	104174619:104174986:104175773:104175876:104176141:104176878,	104175774	104175876	104175780	104175781	Frame_Shift_Ins	-	G	p.L251fs
KIRC	TCGA-A3-3380-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-A3-3380-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055104	66055105	Frame_Shift_Ins	-	G	p.A131fs
KIRC	TCGA-A3-3380-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-A3-3380-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.R164fs
KIRC	TCGA-A3-3380-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
KIRC	TCGA-A3-3380-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610700	41610701	Frame_Shift_Ins	-	G	p.T134fs
KIRC	TCGA-A3-3380-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621520	42621521	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-A3-3380-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.L333fs
KIRC	TCGA-A3-3380-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-A3-3380-01	ARSA	ENST00000453344.2	chr22	51065261:51065480:51065593:51065834:51066373:51066598,	51065594	51065834	51065756	51065757	Frame_Shift_Ins	-	C	p.A99fs
KIRC	TCGA-A3-3380-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-A3-3382-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-A3-3382-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3382-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3382-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-A3-3382-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3	chr2	220503424:220503591:220504203:220504457:220505151:220505321,	220504204	220504457	220504281	220504282	Frame_Shift_Ins	-	G	p.R1034fs
KIRC	TCGA-A3-3382-01	TNK2	ENST00000489628.1	chr3	195595500:195595580:195596984:195597249:195599146:195599201,	195596985	195597249	195597005	195597006	Frame_Shift_Ins	-	G	p.A508fs
KIRC	TCGA-A3-3382-01	TNK2	ENST00000411741.1,ENST00000478623.1,ENST00000392400.1,ENST00000424563.1,ENST00000428187.1,ENST00000333602.6	chr3	195595500:195595580:195596984:195597076:195599146:195599201,	195596985	195597076	195597005	195597006	Frame_Shift_Ins	-	G	p.A508fs
KIRC	TCGA-A3-3382-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
KIRC	TCGA-A3-3382-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984683	123984684	Frame_Shift_Ins	-	C	p.Q465fs
KIRC	TCGA-A3-3382-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142950	31142959	Frame_Shift_Del	CGTGTTTGAG	-	p.LVFE382fs
KIRC	TCGA-A3-3382-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3382-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-A3-3382-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-A3-3382-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481541	140481542	Frame_Shift_Ins	-	C	p.G79fs
KIRC	TCGA-A3-3382-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.R314fs
KIRC	TCGA-A3-3382-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-A3-3382-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-A3-3382-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
KIRC	TCGA-A3-3382-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014791	119014792	Frame_Shift_Ins	-	C	p.A235fs
KIRC	TCGA-A3-3382-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660979	3660980	Frame_Shift_Ins	-	G	p.*227fs
KIRC	TCGA-A3-3382-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
KIRC	TCGA-A3-3382-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055104	66055105	Frame_Shift_Ins	-	G	p.A131fs
KIRC	TCGA-A3-3382-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-A3-3382-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.T539fs
KIRC	TCGA-A3-3382-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.G265fs
KIRC	TCGA-A3-3382-01	CDK2	ENST00000556656.1,ENST00000556276.1,ENST00000266970.4,ENST00000555408.1,ENST00000556146.1	chr12	56362658:56362732:56363258:56363360:56364827:56364871,	56363259	56363360	56363264	56363265	Frame_Shift_Del	GA	-	p.VT164fs
KIRC	TCGA-A3-3382-01	COQ10A	ENST00000553234.1	chr12	56661583:56661724:56662842:56662892:56663243:56663345,	56662843	56662892	56662853	56662853	Frame_Shift_Del	C	-	p.Q98fs
KIRC	TCGA-A3-3382-01	COQ10A	ENST00000546544.1,ENST00000433805.2,ENST00000308197.5	chr12	56661583:56661724:56662842:56663035:56663243:56663345,	56662843	56663035	56662853	56662853	Frame_Shift_Del	C	-	p.Q98fs
KIRC	TCGA-A3-3382-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846337	20846338	Frame_Shift_Ins	-	C	p.C1856fs
KIRC	TCGA-A3-3382-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
KIRC	TCGA-A3-3382-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.FP623fs
KIRC	TCGA-A3-3382-01	SLC5A2	ENST00000330498.3,ENST00000419665.2	chr16	31497490:31497596:31498640:31498721:31498850:31499080,	31498641	31498721	31498692	31498693	Frame_Shift_Ins	-	G	p.R209fs
KIRC	TCGA-A3-3382-01	CTIF	ENST00000256413.3,ENST00000591387.1,ENST00000382998.4,ENST00000587752.1,ENST00000588345.1	chr18	46145908:46146116:46162984:46163056:46190122:46190182,	46162985	46163056	46163042	46163043	Frame_Shift_Ins	-	C	p.P80fs
KIRC	TCGA-A3-3382-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3382-01	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461727:10461838:10463109:10463227:10463601:10463750,	10463110	10463227	10463112	10463113	Frame_Shift_Ins	-	G	p.E1106fs
KIRC	TCGA-A3-3382-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.E297fs
KIRC	TCGA-A3-3382-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.G301fs
KIRC	TCGA-A3-3382-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-A3-3382-01	TPST2	ENST00000398110.2,ENST00000403880.1,ENST00000338754.4	chr22	26928660:26928711:26932253:26932452:26936754:26936837,	26932254	26932452	26932298	26932299	Frame_Shift_Ins	-	G	p.L333fs
KIRC	TCGA-A3-3382-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289119	31289120	Frame_Shift_Ins	-	C	p.P627fs
KIRC	TCGA-A3-3382-01	CERK	ENST00000216264.8,ENST00000443629.1,ENST00000541677.1	chr22	47082999:47083103:47085888:47086097:47087468:47087674,	47085889	47086097	47086001	47086002	Frame_Shift_Ins	-	C	p.E477fs
KIRC	TCGA-A3-3382-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-A3-3383-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-A3-3383-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
KIRC	TCGA-A3-3383-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
KIRC	TCGA-A3-3383-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.Y2554fs
KIRC	TCGA-A3-3383-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181821	154181822	Frame_Shift_Ins	-	G	p.PG580fs
KIRC	TCGA-A3-3383-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-A3-3383-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-A3-3383-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-A3-3383-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
KIRC	TCGA-A3-3383-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-A3-3383-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559112	56559113	Frame_Shift_Ins	-	G	p.R1074fs
KIRC	TCGA-A3-3383-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-A3-3383-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-A3-3383-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546603	21546604	Frame_Shift_Ins	-	G	p.EG734fs
KIRC	TCGA-A3-3383-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875737	4875738	Frame_Shift_Ins	-	G	p.R865fs
KIRC	TCGA-A3-3383-01	ACE	ENST00000538928.1,ENST00000584529.1	chr17	61558926:61559099:61559826:61560050:61560820:61560919,	61559827	61560050	61559936	61559937	Frame_Shift_Ins	-	G	p.G410fs
KIRC	TCGA-A3-3383-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-A3-3383-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.G301fs
KIRC	TCGA-A3-3383-01	ASB2	ENST00000555507.1,ENST00000555019.1,ENST00000315988.4	chr14	94404064:94404197:94405453:94406018:94413694:94413866,	94405454	94406018	94405855	94405856	Frame_Shift_Ins	-	GC	p.RL405fs
KIRC	TCGA-AK-3427-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-AK-3427-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-AK-3427-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-AK-3427-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
KIRC	TCGA-AK-3427-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-AK-3427-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877785	150877786	Frame_Shift_Ins	-	C	p.A335fs
KIRC	TCGA-AK-3427-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
KIRC	TCGA-AK-3427-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
KIRC	TCGA-AK-3427-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856125	100856126	Frame_Shift_Ins	-	C	p.A293fs
KIRC	TCGA-AK-3427-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
KIRC	TCGA-AK-3427-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9048910:9049108:9051430:9051592,	9048911	9049108	9048995	9048996	Frame_Shift_Ins	-	G	p.A873fs
KIRC	TCGA-AK-3427-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
KIRC	TCGA-AK-3427-01	TMEM132A	ENST00000005286.4,ENST00000453848.2,ENST00000534983.1	chr11	60699226:60699356:60699455:60699599:60701013:60701043,	60699456	60699599	60699533	60699534	Frame_Shift_Ins	-	G	p.GG431fs
KIRC	TCGA-AK-3427-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
KIRC	TCGA-AK-3427-01	STX5	ENST00000491231.1,ENST00000294179.3	chr11	62595048:62595103:62598490:62598734:62599425:62599503,	62598491	62598734	62598584	62598585	Frame_Shift_Ins	-	G	p.R44fs
KIRC	TCGA-AK-3427-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-AK-3427-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
KIRC	TCGA-AK-3427-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-AK-3427-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621520	42621521	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-AK-3427-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.G301fs
KIRC	TCGA-AK-3427-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-AK-3427-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662479	40662480	Frame_Shift_Ins	-	G	p.G749fs
KIRC	TCGA-AK-3440-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-AK-3440-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934780	153934781	Frame_Shift_Ins	-	C	p.G78fs
KIRC	TCGA-AK-3440-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026383	226026384	Frame_Shift_Ins	-	C	p.NP131fs
KIRC	TCGA-AK-3440-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-AK-3440-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-AK-3440-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
KIRC	TCGA-AK-3440-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
KIRC	TCGA-AK-3440-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.T1044fs
KIRC	TCGA-AK-3440-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-AK-3440-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-AK-3440-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.AG101fs
KIRC	TCGA-AK-3440-01	ASAP1	ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131104218:131104389:131124339:131124568:131127873:131127981,	131124340	131124568	131124498	131124499	Frame_Shift_Ins	-	G	p.G748fs
KIRC	TCGA-AK-3440-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
KIRC	TCGA-AK-3440-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
KIRC	TCGA-AK-3440-01	TMEM132A	ENST00000005286.4,ENST00000453848.2,ENST00000534983.1	chr11	60699226:60699356:60699455:60699599:60701013:60701043,	60699456	60699599	60699533	60699534	Frame_Shift_Ins	-	G	p.GG431fs
KIRC	TCGA-AK-3440-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-AK-3440-01	ASIC1	ENST00000228468.4,ENST00000447966.2	chr12	50453669:50453737:50470995:50471146:50471782:50471910,	50470996	50471146	50471134	50471135	Frame_Shift_Ins	-	G	p.G233fs
KIRC	TCGA-AK-3440-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.R200fs
KIRC	TCGA-AK-3440-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
KIRC	TCGA-AK-3440-01	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461727:10461838:10463109:10463227:10463601:10463750,	10463110	10463227	10463112	10463113	Frame_Shift_Ins	-	G	p.E1106fs
KIRC	TCGA-AK-3440-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276860	15276861	Frame_Shift_Ins	-	C	p.S1802fs
KIRC	TCGA-AK-3440-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000599857.1,ENST00000595904.1	chr19	50905034:50905181:50905255:50905381:50905461:50905630,	50905256	50905381	50905323	50905324	Frame_Shift_Ins	-	G	p.RG177fs
KIRC	TCGA-AK-3440-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10630169:10630283:10630894:10631008:10632228:10632342,	10630895	10631008	10630923	10630924	Frame_Shift_Ins	-	G	p.P402fs
KIRC	TCGA-AK-3440-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
KIRC	TCGA-AK-3440-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-AK-3440-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
KIRC	TCGA-AK-3440-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
KIRC	TCGA-AK-3440-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459450	100459451	Frame_Shift_Ins	-	C	p.G543fs
KIRC	TCGA-AK-3443-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-AK-3443-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-AK-3443-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
KIRC	TCGA-AK-3443-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
KIRC	TCGA-AK-3443-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-AK-3443-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
KIRC	TCGA-AK-3443-01	BRPF3	ENST00000357641.6,ENST00000441730.2,ENST00000534400.1,ENST00000441123.1	chr6	36179224:36179337:36181656:36182163:36185693:36185787,	36181657	36182163	36181728	36181729	Frame_Shift_Ins	-	C	p.P852fs
KIRC	TCGA-AK-3443-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700166	149700167	Frame_Shift_Ins	-	C	p.T372fs
KIRC	TCGA-AK-3443-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
KIRC	TCGA-AK-3443-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-AK-3443-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-AK-3443-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-AK-3443-01	HERC2	ENST00000261609.7	chr15	28478579:28478707:28478809:28478942:28479215:28479430,	28478810	28478942	28478873	28478874	Frame_Shift_Ins	-	G	p.A1430fs
KIRC	TCGA-AK-3443-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
KIRC	TCGA-AK-3443-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-AK-3443-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-AK-3444-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-AK-3444-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
KIRC	TCGA-AK-3444-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-AK-3444-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652983	1652984	Frame_Shift_Ins	-	G	p.L857fs
KIRC	TCGA-AK-3444-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3	chr2	220503424:220503591:220504203:220504457:220505151:220505321,	220504204	220504457	220504281	220504282	Frame_Shift_Ins	-	G	p.R1034fs
KIRC	TCGA-AK-3444-01	IL17RC	ENST00000494365.1,ENST00000498214.1,ENST00000466046.1,ENST00000383812.4,ENST00000403601.3,ENST00000455057.1,ENST00000295981.3	chr3	9974291:9974387:9974503:9974542:9974636:9974832,	9974504	9974542	9974537	9974538	Frame_Shift_Ins	-	G	p.W577fs
KIRC	TCGA-AK-3444-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49051381	49051382	Frame_Shift_Ins	-	G	p.G835fs
KIRC	TCGA-AK-3444-01	WDR6	ENST00000415265.2	chr3	49044835:49044964:49050723:49051549:49051642:49051726,	49050724	49051549	49051381	49051382	Frame_Shift_Ins	-	G	p.G835fs
KIRC	TCGA-AK-3444-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49051381	49051382	Frame_Shift_Ins	-	G	p.G835fs
KIRC	TCGA-AK-3444-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173277	126173278	Frame_Shift_Ins	-	G	p.H720fs
KIRC	TCGA-AK-3444-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.WG392fs
KIRC	TCGA-AK-3444-01	PAX5	ENST00000522003.1,ENST00000414447.1,ENST00000358127.4,ENST00000524340.1	chr9	36846839:36846926:36882000:36882102:36966545:36966721,36846839:36846926:36882000:36882102:36923351:36923481,	36882001	36882102	36882049	36882050	Frame_Shift_Ins	-	G	p.W322fs
KIRC	TCGA-AK-3444-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-AK-3444-01	CARS2	ENST00000465145.1,ENST00000257347.4,ENST00000541443.1,ENST00000535398.1,ENST00000539269.1	chr13	111329442:111329450:111335397:111335481:111340067:111340173,	111335398	111335481	111335435	111335435	Frame_Shift_Del	T	-	p.K206fs
KIRC	TCGA-AK-3444-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-AK-3444-01	KIAA0355	ENST00000299505.6	chr19	34821093:34821252:34824608:34824706:34830771:34830897,	34824609	34824706	34824651	34824652	Frame_Shift_Ins	-	C	p.P436fs
KIRC	TCGA-AK-3444-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.L333fs
KIRC	TCGA-AK-3444-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-AK-3444-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289119	31289120	Frame_Shift_Ins	-	C	p.P627fs
KIRC	TCGA-AK-3444-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-AK-3447-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-AK-3447-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-AK-3447-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-AK-3447-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-AK-3447-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-AK-3447-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
KIRC	TCGA-AK-3447-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.S54fs
KIRC	TCGA-AK-3447-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026383	226026384	Frame_Shift_Ins	-	C	p.NP131fs
KIRC	TCGA-AK-3447-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-AK-3447-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-AK-3447-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415681	86415682	Frame_Shift_Ins	-	C	p.VP191fs
KIRC	TCGA-AK-3447-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-AK-3447-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
KIRC	TCGA-AK-3447-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425145	59425146	Frame_Shift_Ins	-	G	p.G160fs
KIRC	TCGA-AK-3447-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-AK-3447-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-AK-3447-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018467	134018468	Frame_Shift_Ins	-	G	p.MG246fs
KIRC	TCGA-AK-3447-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.G265fs
KIRC	TCGA-AK-3447-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-AK-3447-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-AK-3447-01	E2F7	ENST00000322886.7	chr12	77415027:77417965:77419337:77419762:77421662:77421918,	77419338	77419762	77419716	77419717	Frame_Shift_Ins	-	G	p.H729fs
KIRC	TCGA-AK-3447-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340958	41340959	Frame_Shift_Ins	-	G	p.PK121fs
KIRC	TCGA-AK-3447-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
KIRC	TCGA-AK-3447-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
KIRC	TCGA-AK-3447-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755179	6755180	Frame_Shift_Ins	-	G	p.D215fs
KIRC	TCGA-AK-3447-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-AK-3447-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.G301fs
KIRC	TCGA-AK-3447-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-AK-3453-01	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21935342:21935429:21936067:21936139:21936612:21936717,	21936068	21936139	21936093	21936094	Frame_Shift_Ins	-	G	p.P349fs
KIRC	TCGA-AK-3453-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
KIRC	TCGA-AK-3453-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-AK-3453-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-AK-3453-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-AK-3453-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
KIRC	TCGA-AK-3453-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.T1044fs
KIRC	TCGA-AK-3453-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-AK-3453-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-AK-3453-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.AG101fs
KIRC	TCGA-AK-3453-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-AK-3453-01	AKNA	ENST00000492875.1	chr9	117104288:117104405:117105987:117108289:117108948:117109054,	117105988	117108289	117108194	117108194	Frame_Shift_Del	C	-	p.V1204fs
KIRC	TCGA-AK-3453-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-AK-3453-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.LG23fs
KIRC	TCGA-AK-3453-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014791	119014792	Frame_Shift_Ins	-	C	p.A235fs
KIRC	TCGA-AK-3453-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
KIRC	TCGA-AK-3453-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282886	47282887	Frame_Shift_Ins	-	C	p.SP198fs
KIRC	TCGA-AK-3453-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
KIRC	TCGA-AK-3453-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
KIRC	TCGA-AK-3453-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683557	29683558	Frame_Shift_Ins	-	C	p.TP2565fs
KIRC	TCGA-AK-3453-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270149	66270150	Frame_Shift_Ins	-	C	p.T99fs
KIRC	TCGA-AK-3453-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-AK-3453-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-AK-3453-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.R23fs
KIRC	TCGA-AK-3455-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-AK-3465-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.Q289fs
KIRC	TCGA-AK-3465-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
KIRC	TCGA-AK-3465-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
KIRC	TCGA-AK-3465-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658017	27658018	Frame_Shift_Ins	-	C	p.A195fs
KIRC	TCGA-AK-3465-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-AK-3465-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-AK-3465-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-AK-3465-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
KIRC	TCGA-AK-3465-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.Y2554fs
KIRC	TCGA-AK-3465-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173277	126173278	Frame_Shift_Ins	-	G	p.H720fs
KIRC	TCGA-AK-3465-01	DMTN	ENST00000358242.3,ENST00000523300.1,ENST00000517305.1,ENST00000523623.1,ENST00000265800.5,ENST00000443491.2,ENST00000520174.1,ENST00000415253.1,ENST00000517804.1,ENST00000517418.1,ENST00000519850.1,ENST00000432128.1,ENST00000519907.1,ENST00000523782.2,ENST00000523266.1,ENST00000381470.3	chr8	21925037:21925193:21926526:21926571:21926929:21926967,	21926527	21926571	21926551	21926552	Frame_Shift_Ins	-	C	p.P92fs
KIRC	TCGA-AK-3465-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36766828:36767053:36768447:36768637:36776340:36776415,	36768448	36768637	36768517	36768518	Frame_Shift_Ins	-	C	p.P801fs
KIRC	TCGA-AK-3465-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-AK-3465-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-AK-3465-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481541	140481542	Frame_Shift_Ins	-	C	p.G79fs
KIRC	TCGA-AK-3465-01	VSIG2	ENST00000326621.5,ENST00000403470.1	chr11	124619603:124619762:124620609:124620817:124621318:124621476,	124620610	124620817	124620739	124620740	Frame_Shift_Ins	-	G	p.S100fs
KIRC	TCGA-AK-3465-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.G265fs
KIRC	TCGA-AK-3465-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898183	53898184	Frame_Shift_Ins	-	C	p.T142fs
KIRC	TCGA-AK-3465-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-AK-3465-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-AK-3465-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.R200fs
KIRC	TCGA-AK-3465-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846337	20846338	Frame_Shift_Ins	-	C	p.C1856fs
KIRC	TCGA-AK-3465-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
KIRC	TCGA-AK-3465-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546603	21546604	Frame_Shift_Ins	-	G	p.EG734fs
KIRC	TCGA-AK-3465-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
KIRC	TCGA-AK-3465-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
KIRC	TCGA-AK-3465-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-AK-3465-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621520	42621521	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-AK-3465-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.E297fs
KIRC	TCGA-AK-3465-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
KIRC	TCGA-AS-3777-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-AS-3777-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
KIRC	TCGA-AS-3777-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
KIRC	TCGA-AS-3777-01	TRANK1	ENST00000429976.2,ENST00000428977.2,ENST00000301807.6	chr3	36872363:36875410:36876252:36876398:36879862:36879995,	36876253	36876398	36876345	36876345	Frame_Shift_Del	G	-	p.F1813fs
KIRC	TCGA-AS-3777-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.T1044fs
KIRC	TCGA-AS-3777-01	PDZD2	ENST00000282493.3,ENST00000438447.1,ENST00000502489.1	chr5	31983260:31983762:31995681:31995824:32000244:32000377,	31995682	31995824	31995791	31995797	Frame_Shift_Del	TCACTCA	-	p.VTQ363fs
KIRC	TCGA-AS-3777-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
KIRC	TCGA-AS-3777-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-AS-3777-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
KIRC	TCGA-AS-3777-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1,ENST00000277537.6	chr9	139342535:139342613:139345707:139345860:139347879:139347962,	139345708	139345860	139345822	139345823	Frame_Shift_Ins	-	G	p.R2066fs
KIRC	TCGA-AS-3777-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014791	119014792	Frame_Shift_Ins	-	C	p.A235fs
KIRC	TCGA-AS-3777-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
KIRC	TCGA-AS-3777-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425145	59425146	Frame_Shift_Ins	-	G	p.G160fs
KIRC	TCGA-AS-3777-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
KIRC	TCGA-AS-3777-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.T539fs
KIRC	TCGA-AS-3777-01	MRPL51	ENST00000537701.1	chr12	6601316:6601633:6602027:6602138:6602882:6603006,	6602028	6602138	6602094	6602095	Frame_Shift_Ins	-	G	p.S42fs
KIRC	TCGA-AS-3777-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.G265fs
KIRC	TCGA-AS-3777-01	SORD	ENST00000559230.1	chr15	45335454:45335619:45353179:45353424:45357468:45357587,	45353180	45353424	45353365	45353366	Frame_Shift_Ins	-	C	p.TP122fs
KIRC	TCGA-AS-3777-01	SORD	ENST00000558580.1,ENST00000267814.9	chr15	45335454:45335619:45353264:45353424:45357468:45357587,	45353265	45353424	45353365	45353366	Frame_Shift_Ins	-	C	p.TP122fs
KIRC	TCGA-AS-3777-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
KIRC	TCGA-AS-3777-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
KIRC	TCGA-AS-3777-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755179	6755180	Frame_Shift_Ins	-	G	p.D215fs
KIRC	TCGA-AS-3777-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
KIRC	TCGA-AS-3777-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
KIRC	TCGA-AS-3777-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
KIRC	TCGA-AS-3778-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889626	25889627	Frame_Shift_Ins	-	C	p.P200fs
KIRC	TCGA-AS-3778-01	WASF2	ENST00000430629.2	chr1	27734690:27734840:27736185:27736700:27739065:27739221,	27736186	27736700	27736340	27736340	Frame_Shift_Del	A	-	p.P400fs
KIRC	TCGA-AS-3778-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
KIRC	TCGA-AS-3778-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
KIRC	TCGA-AS-3778-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-AS-3778-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-AS-3778-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
KIRC	TCGA-AS-3778-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
KIRC	TCGA-AS-3778-01	XDH	ENST00000379416.3	chr2	31596738:31596822:31598245:31598420:31599918:31600103,	31598246	31598420	31598344	31598345	Frame_Shift_Del	CA	-	p.PG501fs
KIRC	TCGA-AS-3778-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
KIRC	TCGA-AS-3778-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-AS-3778-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
KIRC	TCGA-AS-3778-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188268	10188269	Frame_Shift_Ins	-	C	p.I138fs
KIRC	TCGA-AS-3778-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-AS-3778-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
KIRC	TCGA-AS-3778-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000487065.1,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136139934:136140005:136141251:136141455:136141609:136141699,	136141252	136141455	136141378	136141379	Frame_Shift_Del	AC	-	p.S637fs
KIRC	TCGA-AS-3778-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547909	165547915	Frame_Shift_Del	CTTCATT	-	p.NEA303fs
KIRC	TCGA-AS-3778-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
KIRC	TCGA-AS-3778-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727193	137727194	Frame_Shift_Ins	-	C	p.HP624fs
KIRC	TCGA-AS-3778-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.R574fs
KIRC	TCGA-AS-3778-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32017774:32018098:32020446:32020770:32021164:32021482,	32020447	32020770	32020535	32020536	Frame_Shift_Ins	-	C	p.A3009fs
KIRC	TCGA-AS-3778-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471391	56471392	Frame_Shift_Del	AG	-	p.SL2645fs
KIRC	TCGA-AS-3778-01	SCML4	ENST00000459992.1,ENST00000440927.1	chr6	108070887:108071017:108076774:108076868:108145329:108145490,108070887:108071017:108076774:108076868:108093375:108093455,	108076775	108076868	108076790	108076791	Frame_Shift_Ins	-	G	p.L18fs
KIRC	TCGA-AS-3778-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1,ENST00000417852.1	chr7	716865:716957:720192:720363:750965:751164,	720193	720363	720280	720281	Frame_Shift_Ins	-	G	p.Q87fs
KIRC	TCGA-AS-3778-01	GPNMB	ENST00000381990.2,ENST00000453162.2	chr7	23300106:23300392:23306099:23306234:23307504:23307607,	23306100	23306234	23306134	23306135	Frame_Shift_Ins	-	T	p.T352fs
KIRC	TCGA-AS-3778-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.AG101fs
KIRC	TCGA-AS-3778-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856125	100856126	Frame_Shift_Ins	-	C	p.A293fs
KIRC	TCGA-AS-3778-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
KIRC	TCGA-AS-3778-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
KIRC	TCGA-AS-3778-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75156987	75156988	Frame_Shift_Ins	-	G	p.A561fs
KIRC	TCGA-AS-3778-01	PABPC1	ENST00000519100.1,ENST00000318607.5,ENST00000519622.1,ENST00000519596.1,ENST00000519004.1,ENST00000522387.1	chr8	101724609:101724685:101724879:101725017:101725314:101725409,	101724880	101725017	101724994	101724995	Frame_Shift_Ins	-	A	p.R254fs
KIRC	TCGA-AS-3778-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
KIRC	TCGA-AS-3778-01	TSTD2	ENST00000354801.2,ENST00000341170.4	chr9	100387962:100388279:100389679:100389894:100395524:100395583,	100389680	100389894	100389762	100389763	Frame_Shift_Ins	-	G	p.E28fs
KIRC	TCGA-AS-3778-01	TSTD2	ENST00000375172.2	chr9	100387962:100388279:100389587:100389894:100395524:100395583,	100389588	100389894	100389762	100389763	Frame_Shift_Ins	-	G	p.E28fs
KIRC	TCGA-AS-3778-01	CDK5RAP2	ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000349780.4,ENST00000425647.1	chr9	123166313:123166391:123169289:123169526:123170624:123170746,	123169290	123169526	123169393	123169394	Frame_Shift_Del	CT	-	p.K1620fs
KIRC	TCGA-AS-3778-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.Q1005fs
KIRC	TCGA-AS-3778-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
KIRC	TCGA-AS-3778-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
KIRC	TCGA-AS-3778-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000396253.3	chr11	18301164:18301489:18303496:18303767:18305341:18305448,	18303497	18303767	18303689	18303690	Frame_Shift_Ins	-	G	p.G932fs
KIRC	TCGA-AS-3778-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
KIRC	TCGA-AS-3778-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1,ENST00000529447.1	chr11	57463391:57463515:57464232:57464345:57466030:57466307,	57464233	57464345	57464257	57464258	Frame_Shift_Ins	-	C	p.T345fs
KIRC	TCGA-AS-3778-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
KIRC	TCGA-AS-3778-01	VSIG2	ENST00000326621.5,ENST00000403470.1	chr11	124619603:124619762:124620609:124620817:124621318:124621476,	124620610	124620817	124620739	124620740	Frame_Shift_Ins	-	G	p.S100fs
KIRC	TCGA-AS-3778-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.R164fs
KIRC	TCGA-AS-3778-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-AS-3778-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
KIRC	TCGA-AS-3778-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
KIRC	TCGA-AS-3778-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610700	41610701	Frame_Shift_Ins	-	G	p.T134fs
KIRC	TCGA-AS-3778-01	CLTC	ENST00000269122.3,ENST00000393043.1	chr17	57728563:57728677:57733214:57733388:57737751:57737838,	57733215	57733388	57733326	57733327	Frame_Shift_Ins	-	T	p.F303fs
KIRC	TCGA-AS-3778-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
KIRC	TCGA-AS-3778-01	TRAPPC8	ENST00000283351.4,ENST00000582539.1	chr18	29435622:29435770:29437502:29437945:29444589:29444744,	29437503	29437945	29437545	29437546	Frame_Shift_Ins	-	GG	p.F1049fs
KIRC	TCGA-AS-3778-01	TRAPPC8	ENST00000580104.1	chr18	29435622:29435770:29437502:29437683:29444589:29444744,	29437503	29437683	29437545	29437546	Frame_Shift_Ins	-	GG	p.F1049fs
KIRC	TCGA-AS-3778-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55313660:55315944:55317598:55317729:55319265:55319404,	55317599	55317729	55317669	55317669	Frame_Shift_Del	G	-	p.A1154fs
KIRC	TCGA-AS-3778-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755179	6755180	Frame_Shift_Ins	-	G	p.D215fs
KIRC	TCGA-AS-3778-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
KIRC	TCGA-AS-3778-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000601032.1,ENST00000243562.9,ENST00000396819.3,ENST00000308370.7,ENST00000545697.1,ENST00000318809.7,ENST00000601209.1,ENST00000598677.1,ENST00000595118.1,ENST00000602240.1	chr19	41131761:41131914:41132879:41133260:41133609:41133625,	41132880	41133260	41132910	41132911	Frame_Shift_Ins	-	C	p.P1405fs
KIRC	TCGA-AS-3778-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621520	42621521	Frame_Shift_Ins	-	G	p.D84fs
KIRC	TCGA-AS-3778-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.L333fs
KIRC	TCGA-AS-3778-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000599857.1,ENST00000595904.1	chr19	50905034:50905181:50905255:50905381:50905461:50905630,	50905256	50905381	50905323	50905324	Frame_Shift_Ins	-	G	p.RG177fs
KIRC	TCGA-AS-3778-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
KIRC	TCGA-AS-3778-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
KIRC	TCGA-AS-3778-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-B0-4823-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188204	10188205	Frame_Shift_Del	TT	-	p.L116fs
KIRC	TCGA-B0-4823-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17764666	17764666	Frame_Shift_Del	G	-	p.S1650fs
KIRC	TCGA-B0-4823-01	ECHDC1	ENST00000368292.6,ENST00000368287.1,ENST00000309620.9,ENST00000368291.2,ENST00000479525.2	chr6	127648155:127648289:127651953:127652175:127664105:127664491,127648155:127648289:127651953:127652175:127663500:127663552,127648155:127648289:127651953:127652175:127664480:127664493,	127651954	127652175	127652111	127652111	Frame_Shift_Del	T	-	p.T27fs
KIRC	TCGA-B0-4823-01	ZC3HC1	ENST00000311873.5,ENST00000467642.1,ENST00000481503.1,ENST00000358303.4	chr7	129662158:129662365:129663350:129663563:129664102:129664217,	129663351	129663563	129663471	129663471	Frame_Shift_Del	G	-	p.P371fs
KIRC	TCGA-B0-4823-01	PSMA4	ENST00000559365.1,ENST00000560217.1,ENST00000560737.1,ENST00000559934.1,ENST00000413382.2,ENST00000559082.1,ENST00000044462.7,ENST00000560099.1	chr15	78837975:78838106:78838916:78839040:78841131:78841162,	78838917	78839040	78838988	78838989	Frame_Shift_Ins	-	AGCAA	p.Q194fs
KIRC	TCGA-B0-4827-01	NFU1	ENST00000419370.1	chr2	69646669:69646736:69650713:69650849:69659033:69659137,69646669:69646736:69650713:69650849:69657035:69657153,	69650714	69650849	69650750	69650751	Frame_Shift_Ins	-	T	p.H89fs
KIRC	TCGA-B0-4827-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439864	52439864	Frame_Shift_Del	T	-	p.E284fs
KIRC	TCGA-B0-5075-01	SLC16A4	ENST00000369781.4,ENST00000461647.2	chr1	110921565:110921978:110923603:110923765:110924273:110924417,110921565:110921978:110923603:110923765:110931858:110931977,110919571:110919783:110923603:110923765:110924273:110924417,	110923604	110923765	110923620	110923623	Frame_Shift_Del	ATCT	-	p.ID169fs
KIRC	TCGA-B0-5075-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439219	52439238	Frame_Shift_Del	GCTGCCTGGAGGCTTCACCA	-	p.VVKPPGS335fs
KIRC	TCGA-B0-5075-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000397991.4,ENST00000317104.7,ENST00000489671.1,ENST00000467072.1,ENST00000479040.1,ENST00000486111.1,ENST00000495310.1,ENST00000310282.6,ENST00000477292.1	chr3	141671344:141671538:141671752:141671858:141678515:141678682,	141671753	141671858	141671843	141671843	Frame_Shift_Del	G	-	p.P296fs
KIRC	TCGA-B0-5075-01	DMPK	ENST00000596920.1	chr19	46281384:46281478:46281750:46281899:46282391:46282426,	46281751	46281899	46281793	46281794	Frame_Shift_Ins	-	CAATCAAT	p.H190fs
KIRC	TCGA-B0-5084-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637152	176637152	Frame_Shift_Del	T	-	p.T584fs
KIRC	TCGA-B0-5084-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844355	123844356	Frame_Shift_Ins	-	C	p.HP780fs
KIRC	TCGA-B0-5085-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150769090:150769223:150771125:150771380:150771485:150771575,	150771126	150771380	150771368	150771369	Frame_Shift_Ins	-	T	p.S927fs
KIRC	TCGA-B0-5085-01	SCYL2	ENST00000360820.2,ENST00000549687.1	chr12	100704821:100704971:100706209:100706431:100707199:100707316,	100706210	100706431	100706229	100706229	Frame_Shift_Del	A	-	p.E217fs
KIRC	TCGA-B0-5092-01	CAMK1D	ENST00000378847.3,ENST00000378845.1	chr10	12811671:12811798:12833156:12833232:12856193:12856306,	12833157	12833232	12833227	12833228	Frame_Shift_Ins	-	A	p.YL212fs
KIRC	TCGA-B0-5092-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847383	28847383	Frame_Shift_Del	G	-	p.G1009fs
KIRC	TCGA-B0-5092-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847383	28847383	Frame_Shift_Del	G	-	p.G1009fs
KIRC	TCGA-B0-5092-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847383	28847383	Frame_Shift_Del	G	-	p.G1009fs
KIRC	TCGA-B0-5094-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588877	52588877	Frame_Shift_Del	G	-	p.P1405fs
KIRC	TCGA-B0-5094-01	RFC1	ENST00000381897.1,ENST00000418436.1,ENST00000349703.2	chr4	39324959:39325037:39328182:39328260:39329143:39329376,	39328183	39328260	39328257	39328258	Frame_Shift_Del	AA	-	p.LS189fs
KIRC	TCGA-B0-5094-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630642	158630642	Frame_Shift_Del	T	-	p.K26fs
KIRC	TCGA-B0-5095-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000432218.1,ENST00000337006.4,ENST00000376083.3	chr9	88257741:88257858:88261235:88261333:88270057:88270115,	88261236	88261333	88261239	88261239	Frame_Shift_Del	A	-	p.F394fs
KIRC	TCGA-B0-5095-01	SLC47A2	ENST00000325411.5,ENST00000350657.5,ENST00000467609.1	chr17	19605917:19605987:19606404:19606480:19607382:19607491,	19606405	19606480	19606416	19606416	Frame_Shift_Del	A	-	p.F375fs
KIRC	TCGA-B0-5096-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156526324:156526485:156530725:156530813:156531629:156531793,	156530726	156530813	156530742	156530743	Frame_Shift_Ins	-	C	p.G371fs
KIRC	TCGA-B0-5096-01	FN3K	ENST00000300784.7	chr17	80699186:80699269:80706730:80706853:80708292:80709073,	80706731	80706853	80706807	80706808	Frame_Shift_Ins	-	G	p.R182fs
KIRC	TCGA-B0-5096-01	FBLN1	ENST00000348697.2,ENST00000340923.5,ENST00000327858.6,ENST00000442170.2,ENST00000262722.7,ENST00000402984.3	chr22	45942964:45943084:45944492:45944624:45946371:45946495,	45944493	45944624	45944598	45944599	Frame_Shift_Ins	-	G	p.R516fs
KIRC	TCGA-B0-5097-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597369	52597369	Frame_Shift_Del	G	-	p.P1308fs
KIRC	TCGA-B0-5098-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527421	115527421	Frame_Shift_Del	A	-	p.K881fs
KIRC	TCGA-B0-5098-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288484	151288484	Frame_Shift_Del	G	-	p.A170fs
KIRC	TCGA-B0-5098-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160293220:160293320:160295332:160295442:160302237:160302347,	160295333	160295442	160295426	160295427	Frame_Shift_Ins	-	T	p.T171fs
KIRC	TCGA-B0-5098-01	ARHGAP30	ENST00000461003.1,ENST00000368016.3,ENST00000368013.3	chr1	161024412:161024495:161026177:161026322:161029403:161029506,	161026178	161026322	161026313	161026313	Frame_Shift_Del	A	-	p.F70fs
KIRC	TCGA-B0-5098-01	TMCC2	ENST00000358024.3,ENST00000545499.1,ENST00000495538.1	chr1	205210641:205211172:205238077:205239012:205240247:205240383,	205238078	205239012	205238671	205238671	Frame_Shift_Del	C	-	p.D447fs
KIRC	TCGA-B0-5098-01	AHCTF1	ENST00000470300.1	chr1	247006003:247006078:247007096:247007230:247012916:247013151,247004263:247004300:247007096:247007230:247012916:247013151,	247007097	247007230	247007131	247007131	Frame_Shift_Del	T	-	p.N2199fs
KIRC	TCGA-B0-5098-01	ATAD2B	ENST00000238789.5,ENST00000474583.1	chr2	24033185:24033372:24042616:24042752:24046127:24046439,	24042617	24042752	24042679	24042682	Frame_Shift_Del	TGAG	-	p.HS734fs
KIRC	TCGA-B0-5098-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1,ENST00000434523.2	chr2	48049356:48049442:48050281:48050499:48059487:48059590,	48050282	48050499	48050443	48050443	Frame_Shift_Del	T	-	p.K485fs
KIRC	TCGA-B0-5098-01	ZNF619	ENST00000456778.1,ENST00000520737.1	chr3	40519470:40519494:40524078:40524195:40528296:40529750,	40524079	40524195	40524165	40524165	Frame_Shift_Del	G	-	p.G130fs
KIRC	TCGA-B0-5098-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69087993:69088160:69088701:69088844:69091957:69092063,	69088702	69088844	69088741	69088741	Frame_Shift_Del	T	-	p.K599fs
KIRC	TCGA-B0-5098-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000249883.5,ENST00000513145.1	chr3	134085124:134085269:134086338:134086645:134089541:134090336,	134086339	134086645	134086562	134086562	Frame_Shift_Del	G	-	p.P333fs
KIRC	TCGA-B0-5098-01	IGFBP7	ENST00000295666.4,ENST00000512512.1	chr4	57896938:57897502:57898591:57898718:57899360:57899477,	57898592	57898718	57898593	57898593	Frame_Shift_Del	T	-	p.K276fs
KIRC	TCGA-B0-5098-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334907	Frame_Shift_Del	T	-	p.K923fs
KIRC	TCGA-B0-5098-01	FNIP1	ENST00000511848.1,ENST00000510461.1,ENST00000307968.7	chr5	131055009:131055110:131066596:131066731:131080256:131080383,	131066597	131066731	131066705	131066706	Frame_Shift_Del	TT	-	p.K82fs
KIRC	TCGA-B0-5098-01	MBOAT1	ENST00000536798.1,ENST00000541730.1,ENST00000324607.7	chr6	20144450:20144546:20151415:20151493:20152854:20153000,	20151416	20151493	20151474	20151475	Frame_Shift_Ins	-	A	p.A89fs
KIRC	TCGA-B0-5098-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395266	64395267	Frame_Shift_Ins	-	A	p.K548fs
KIRC	TCGA-B0-5098-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923024	158923024	Frame_Shift_Del	C	-	p.P779fs
KIRC	TCGA-B0-5098-01	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367351	105367351	Frame_Shift_Del	A	-	p.K427fs
KIRC	TCGA-B0-5098-01	NOXA1	ENST00000341349.2,ENST00000392815.2	chr9	140325687:140325793:140327480:140327526:140327656:140327715,	140327481	140327526	140327515	140327516	Frame_Shift_Del	CT	-	p.P280fs
KIRC	TCGA-B0-5098-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.Q1005fs
KIRC	TCGA-B0-5098-01	AKIP1	ENST00000299576.5,ENST00000396648.2,ENST00000529876.1,ENST00000534506.1	chr11	8933161:8933218:8936372:8936477:8940883:8940961,8933161:8933218:8936372:8936477:8938833:8938914,	8936373	8936477	8936454	8936454	Frame_Shift_Del	T	-	p.C102fs
KIRC	TCGA-B0-5098-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000530013.1,ENST00000529137.1,ENST00000448981.2	chr11	33790396:33790560:33792286:33792376:33795939:33796050,	33792287	33792376	33792303	33792304	Frame_Shift_Ins	-	T	p.L55fs
KIRC	TCGA-B0-5098-01	FBXO3	ENST00000530401.1	chr11	33790396:33790560:33792286:33792361:33795939:33796064,	33792287	33792361	33792303	33792304	Frame_Shift_Ins	-	T	p.L55fs
KIRC	TCGA-B0-5098-01	SMARCC2	ENST00000548130.1,ENST00000267064.4,ENST00000549209.1,ENST00000552931.1	chr12	56566211:56566274:56566368:56566488:56567479:56567633,	56566369	56566488	56566385	56566385	Frame_Shift_Del	T	-	p.K616fs
KIRC	TCGA-B0-5098-01	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58000848	58000848	Frame_Shift_Del	C	-	p.P69fs
KIRC	TCGA-B0-5098-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58000848	58000848	Frame_Shift_Del	C	-	p.P69fs
KIRC	TCGA-B0-5098-01	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58001073	58001073	Frame_Shift_Del	C	-	p.P144fs
KIRC	TCGA-B0-5098-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58001073	58001073	Frame_Shift_Del	C	-	p.P144fs
KIRC	TCGA-B0-5098-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1,ENST00000382778.4	chr13	21199888:21199988:21205154:21205241:21212470:21212657,	21205155	21205241	21205180	21205180	Frame_Shift_Del	A	-	p.E451fs
KIRC	TCGA-B0-5098-01	LAMP1	ENST00000472564.1,ENST00000332556.4	chr13	113963957:113964177:113965023:113965182:113973783:113973810,	113965024	113965182	113965071	113965071	Frame_Shift_Del	A	-	p.K152fs
KIRC	TCGA-B0-5098-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958026	76958026	Frame_Shift_Del	T	-	p.K625fs
KIRC	TCGA-B0-5098-01	ACSM3	ENST00000440284.2,ENST00000562251.1,ENST00000289416.5,ENST00000563914.1,ENST00000450120.2	chr16	20793029:20793109:20796305:20796429:20797399:20797474,	20796306	20796429	20796371	20796371	Frame_Shift_Del	A	-	p.E362fs
KIRC	TCGA-B0-5098-01	SLC7A6	ENST00000379152.3	chr16	68309029:68309152:68321648:68321774:68324298:68324443,68309029:68309152:68321648:68321774:68325111:68325235,	68321649	68321774	68321684	68321685	Frame_Shift_Ins	-	G	p.G187fs
KIRC	TCGA-B0-5098-01	KDM6B	ENST00000570632.1,ENST00000254846.5,ENST00000448097.2	chr17	7748631:7748774:7748867:7749009:7749189:7749288,	7748868	7749009	7748975	7748975	Frame_Shift_Del	C	-	p.P37fs
KIRC	TCGA-B0-5098-01	ACBD4	ENST00000321854.8,ENST00000591136.1,ENST00000589798.1,ENST00000592162.1,ENST00000398322.3,ENST00000376955.4	chr17	43214385:43214506:43214734:43214821:43215126:43215197,	43214735	43214821	43214792	43214793	Frame_Shift_Ins	-	C	p.P158fs
KIRC	TCGA-B0-5098-01	RPS6KB1	ENST00000393021.3,ENST00000443572.2,ENST00000472940.1,ENST00000225577.4,ENST00000406116.3	chr17	58011794:58011885:58012553:58012661:58013575:58013638,	58012554	58012661	58012656	58012656	Frame_Shift_Del	A	-	p.K326fs
KIRC	TCGA-B0-5098-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914446	39914446	Frame_Shift_Del	C	-	p.V862fs
KIRC	TCGA-B0-5098-01	PPFIA3	ENST00000602351.1,ENST00000334186.4	chr19	49639980:49640168:49641461:49641684:49642924:49643088,	49641462	49641684	49641637	49641637	Frame_Shift_Del	C	-	p.P677fs
KIRC	TCGA-B0-5098-01	TBC1D17	ENST00000594996.1	chr19	50380958:50381001:50381399:50381498:50381754:50381829,	50381400	50381498	50381462	50381465	Frame_Shift_Del	CTCT	-	p.DS28fs
KIRC	TCGA-B0-5098-01	CNOT3	ENST00000482247.1,ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54650336:54650393:54651882:54652270:54652354:54652432,	54651883	54652270	54651965	54651966	Frame_Shift_Ins	-	C	p.A326fs
KIRC	TCGA-B0-5098-01	BRCC3	ENST00000330045.7,ENST00000340647.4,ENST00000453705.1	chrX	154319058:154319114:154344331:154344463:154344985:154345029,	154344332	154344463	154344352	154344353	Frame_Shift_Ins	-	A	p.H215fs
KIRC	TCGA-B0-5099-01	RAD54L	ENST00000442598.1,ENST00000371975.4,ENST00000493985.1,ENST00000472889.1,ENST00000469835.1	chr1	46725635:46725771:46726213:46726283:46726398:46726529,	46726214	46726283	46726269	46726269	Frame_Shift_Del	C	-	p.P155fs
KIRC	TCGA-B0-5099-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000303354.6,ENST00000409672.1	chr2	167055181:167056374:167060464:167060735:167060869:167060974,	167060465	167060735	167060645	167060645	Frame_Shift_Del	T	-	p.M1534fs
KIRC	TCGA-B0-5099-01	DHRS13	ENST00000394901.3,ENST00000378895.4	chr17	27225840:27225910:27228007:27228319:27228510:27228634,	27228008	27228319	27228249	27228249	Frame_Shift_Del	A	-	p.F97fs
KIRC	TCGA-B0-5102-01	BRD7	ENST00000475877.1,ENST00000394689.2,ENST00000394688.3	chr16	50373886:50373997:50383933:50384078:50388335:50388390,	50383934	50384078	50383993	50383994	Frame_Shift_Ins	-	AC	p.D*177fs
KIRC	TCGA-B0-5104-01	EXOSC9	ENST00000511454.1,ENST00000379663.3,ENST00000511132.1,ENST00000503139.1,ENST00000509800.1,ENST00000512454.1,ENST00000243498.5,ENST00000509980.1	chr4	122728694:122728777:122731121:122731254:122732737:122732796,	122731122	122731254	122731151	122731151	Frame_Shift_Del	G	-	p.R196fs
KIRC	TCGA-B0-5104-01	EXOSC9	ENST00000513654.1	chr4	122728694:122728777:122731121:122731228:122732737:122732826,	122731122	122731228	122731151	122731151	Frame_Shift_Del	G	-	p.R196fs
KIRC	TCGA-B0-5106-01	NT5C2	ENST00000461461.1,ENST00000452156.1	chr10	104899162:104899236:104934614:104934739:104952992:104953029,	104934615	104934739	104934672	104934673	Frame_Shift_Del	AT	-	p.M15fs
KIRC	TCGA-B0-5107-01	POC1B	ENST00000378528.2,ENST00000539190.2,ENST00000549035.1,ENST00000313546.3	chr12	89865944:89866052:89885712:89885892:89890947:89891034,	89885713	89885892	89885726	89885726	Frame_Shift_Del	C	-	p.V17fs
KIRC	TCGA-B0-5107-01	NTN4	ENST00000553059.1	chr12	96131866:96131922:96180716:96181246:96184889:96184930,96131866:96131922:96180716:96181246:96184032:96184087,	96180717	96181246	96181160	96181161	Frame_Shift_Del	AG	-	p.LW47fs
KIRC	TCGA-B0-5107-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560575	32560575	Frame_Shift_Del	A	-	p.N234fs
KIRC	TCGA-B0-5108-01	NTRK1	ENST00000368196.3,ENST00000524377.1,ENST00000534682.1,ENST00000497019.2,ENST00000392302.2	chr1	156844697:156844800:156845311:156845458:156845871:156845991,	156845312	156845458	156845351	156845351	Frame_Shift_Del	C	-	p.S459fs
KIRC	TCGA-B0-5108-01	NTRK1	ENST00000530298.1	chr1	156844697:156844800:156845311:156846002:156846191:156846364,	156845312	156846002	156845351	156845351	Frame_Shift_Del	C	-	p.S459fs
KIRC	TCGA-B0-5108-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3,ENST00000497100.1	chrX	53228158:53228340:53230731:53230926:53231035:53231155,	53230732	53230926	53230876	53230877	Frame_Shift_Ins	-	T	p.L572fs
KIRC	TCGA-B0-5110-01	AGRN	ENST00000379370.2	chr1	984615:984831:984945:985175:985282:985417,	984946	985175	985094	985094	Frame_Shift_Del	C	-	p.P1555fs
KIRC	TCGA-B0-5110-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	137872693:137872863:137917782:137917938:137928310:137928485,	137917783	137917938	137917883	137917884	Frame_Shift_Del	GT	-	p.WS490fs
KIRC	TCGA-B0-5110-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708532	91708532	Frame_Shift_Del	A	-	p.E2374fs
KIRC	TCGA-B0-5115-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188227	10188227	Frame_Shift_Del	A	-	p.T124fs
KIRC	TCGA-B0-5115-01	CTNND2	ENST00000513588.1,ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11236802:11236935:11346483:11346739:11364807:11365002,	11346484	11346739	11346669	11346676	Frame_Shift_Del	GGCATTCT	-	p.QNA479fs
KIRC	TCGA-B0-5115-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379172	77379172	Frame_Shift_Del	A	-	p.R379fs
KIRC	TCGA-B0-5115-01	ZC3H7A	ENST00000571405.1,ENST00000575984.1,ENST00000355758.4,ENST00000396516.2	chr16	11844450:11845362:11846524:11846688:11850092:11850226,	11846525	11846688	11846601	11846602	Frame_Shift_Del	TC	-	p.EK883fs
KIRC	TCGA-B0-5116-01	TMEM79	ENST00000295694.5,ENST00000463670.1,ENST00000405535.2	chr1	156254974:156255058:156256050:156256264:156261175:156261316,156255422:156255774:156256050:156256264:156261175:156261316,	156256051	156256264	156256083	156256083	Frame_Shift_Del	T	-	p.F264fs
KIRC	TCGA-B0-5116-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156256083	156256083	Frame_Shift_Del	T	-	p.F264fs
KIRC	TCGA-B0-5116-01	KPNA1	ENST00000493510.1,ENST00000344337.6,ENST00000482287.1,ENST00000464940.1,ENST00000465882.1	chr3	122172756:122172848:122180070:122180165:122182788:122182888,	122180071	122180165	122180079	122180083	Frame_Shift_Del	TACAA	-	p.NCT140fs
KIRC	TCGA-B0-5116-01	CORO2B	ENST00000566799.1,ENST00000543950.1,ENST00000261861.5,ENST00000540068.1	chr15	69003880:69004045:69006263:69006380:69006897:69007002,	69006264	69006380	69006276	69006276	Frame_Shift_Del	A	-	p.K216fs
KIRC	TCGA-B0-5117-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000522085.1,ENST00000347328.5,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50829270:50829407:50831517:50831621:50834221:50834332,	50831518	50831621	50831576	50831580	Frame_Shift_Del	TTGTA	-	p.RCI198fs
KIRC	TCGA-B0-5117-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000404621.1	chr12	124848224:124848345:124856567:124857156:124862782:124862930,	124856568	124857156	124856836	124856837	Frame_Shift_Ins	-	G	p.G847fs
KIRC	TCGA-B0-5119-01	WDR33	ENST00000322313.4	chr2	128480826:128480921:128481906:128482017:128482460:128482539,	128481907	128482017	128481936	128481937	Frame_Shift_Ins	-	AT	p.T389fs
KIRC	TCGA-B0-5119-01	SNED1	ENST00000342631.6,ENST00000401884.1,ENST00000310397.8,ENST00000405547.3	chr2	241989233:241989350:241991160:241991277:241991457:241991574,	241991161	241991277	241991198	241991199	Frame_Shift_Ins	-	G	p.KG591fs
KIRC	TCGA-B0-5119-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649433	52649434	Frame_Shift_Del	CC	-	p.KE587fs
KIRC	TCGA-B0-5119-01	SPG7	ENST00000561911.1,ENST00000268704.2	chr16	89614410:89614521:89616901:89617017:89619386:89619487,	89616902	89617017	89616935	89616935	Frame_Shift_Del	A	-	p.E567fs
KIRC	TCGA-B0-5698-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610584	52610584	Frame_Shift_Del	C	-	p.E1190fs
KIRC	TCGA-B0-5698-01	ABCC6	ENST00000205557.7,ENST00000456970.2	chr16	16259479:16259790:16263502:16263710:16267140:16267261,	16263503	16263710	16263538	16263538	Frame_Shift_Del	C	-	p.R987fs
KIRC	TCGA-B0-5711-01	NPL	ENST00000367552.2,ENST00000367555.1	chr1	182791249:182791334:182794915:182794955:182798737:182798814,182787772:182787824:182794915:182794955:182798737:182798814,	182794916	182794955	182794926	182794926	Frame_Shift_Del	A	-	p.Q231fs
KIRC	TCGA-B0-5711-01	FAM13A	ENST00000264344.5,ENST00000509094.1	chr4	89859238:89859392:89912123:89912301:89930101:89930229,89859238:89859392:89912123:89912301:89941610:89941820,	89912124	89912301	89912229	89912229	Frame_Shift_Del	A	-	p.L168fs
KIRC	TCGA-B0-5711-01	ALDOB	ENST00000374855.4	chr9	104182859:104184186:104187124:104187324:104187734:104187909,	104187125	104187324	104187311	104187312	Frame_Shift_Ins	-	A	p.F271fs
KIRC	TCGA-B0-5712-01	MAX	ENST00000358402.4,ENST00000556892.1,ENST00000358664.4	chr14	65543326:65543381:65544630:65544754:65560425:65560533,	65544631	65544754	65544727	65544727	Frame_Shift_Del	C	-	p.A67fs
KIRC	TCGA-B0-5712-01	SSH2	ENST00000592397.1,ENST00000579040.1,ENST00000394848.1,ENST00000324677.7,ENST00000577483.1,ENST00000540801.1,ENST00000269033.3	chr17	28011580:28011702:28022476:28022541:28029976:28030080,	28022477	28022541	28022532	28022533	Frame_Shift_Ins	-	G	p.T74fs
KIRC	TCGA-B0-5713-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678783	52678784	Frame_Shift_Ins	-	T	p.I279fs
KIRC	TCGA-B0-5713-01	TCOF1	ENST00000506630.1	chr5	149769509:149769586:149771106:149771739:149772267:149772353,	149771107	149771739	149771631	149771632	Frame_Shift_Ins	-	C	p.Q1174fs
KIRC	TCGA-B0-5713-01	TCOF1	ENST00000513346.1,ENST00000439160.2	chr5	149769509:149769586:149771519:149771739:149772267:149772353,	149771520	149771739	149771631	149771632	Frame_Shift_Ins	-	C	p.Q1174fs
KIRC	TCGA-B0-5713-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000424310.2	chr5	158596686:158596827:158600990:158601166:158603639:158603875,	158600991	158601166	158601127	158601128	Frame_Shift_Ins	-	GGACATT	p.V221fs
KIRC	TCGA-B0-5713-01	RPH3AL	ENST00000570638.1,ENST00000575634.1,ENST00000573588.1,ENST00000331302.7,ENST00000576420.1,ENST00000575130.1,ENST00000323434.8,ENST00000574722.1,ENST00000536489.2,ENST00000577079.1,ENST00000573780.1,ENST00000574953.1,ENST00000575736.1	chr17	169312:169340:171062:171206:177257:177322,	171063	171206	171101	171102	Frame_Shift_Ins	-	CT	p.S61fs
KIRC	TCGA-B2-3924-01	VIL1	ENST00000248444.5,ENST00000392114.2,ENST00000419986.1	chr2	219297520:219297674:219299248:219299428:219300011:219300157,	219299249	219299428	219299338	219299339	Frame_Shift_Ins	-	T	p.*531fs
KIRC	TCGA-B2-3924-01	PTPRG	ENST00000475012.1,ENST00000474889.1,ENST00000295874.10	chr3	62267237:62267384:62268401:62268544:62278095:62278231,	62268402	62268544	62268432	62268432	Frame_Shift_Del	C	-	p.Q1315fs
KIRC	TCGA-B2-3924-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639475	17639475	Frame_Shift_Del	C	-	p.V560fs
KIRC	TCGA-B2-4098-01	CIT	ENST00000392521.2,ENST00000261833.7	chr12	120222828:120222869:120241009:120241193:120260623:120260777,	120241010	120241193	120241113	120241113	Frame_Shift_Del	A	-	p.S400fs
KIRC	TCGA-B2-4101-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52685779:52685826:52692214:52692331:52696148:52696292,	52692215	52692331	52692279	52692280	Frame_Shift_Del	AC	-	p.V195fs
KIRC	TCGA-B4-5832-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637711	52637712	Frame_Shift_Ins	-	A	p.A837fs
KIRC	TCGA-B4-5832-01	TAOK3	ENST00000537305.1,ENST00000537952.1,ENST00000419821.2,ENST00000392533.3	chr12	118590031:118590214:118597950:118598163:118599592:118599684,	118597951	118598163	118598053	118598053	Frame_Shift_Del	G	-	p.H750fs
KIRC	TCGA-B4-5835-01	CD2	ENST00000369478.3	chr1	117303023:117303254:117307105:117307228:117311085:117311850,	117307106	117307228	117307204	117307204	Frame_Shift_Del	A	-	p.K239fs
KIRC	TCGA-B4-5835-01	NPHP3	ENST00000326682.8,ENST00000474871.1,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132400757:132400934:132401546:132401662:132402242:132402368,	132401547	132401662	132401619	132401619	Frame_Shift_Del	T	-	p.K1247fs
KIRC	TCGA-B4-5835-01	DBR1	ENST00000505015.2,ENST00000260803.4	chr3	137882619:137882700:137885922:137886147:137888948:137889034,	137885923	137886147	137886050	137886050	Frame_Shift_Del	A	-	p.F196fs
KIRC	TCGA-B4-5835-01	RAVER1	ENST00000293677.6	chr19	10431533:10431627:10431723:10431935:10432206:10432291,	10431724	10431935	10431728	10431728	Frame_Shift_Del	G	-	p.P507fs
KIRC	TCGA-B4-5836-01	TRMT1L	ENST00000367506.5,ENST00000367504.3	chr1	185109104:185109354:185112488:185112568:185113037:185113161,	185112489	185112568	185112523	185112523	Frame_Shift_Del	T	-	p.K119fs
KIRC	TCGA-B4-5836-01	TNIK	ENST00000284483.8,ENST00000470834.1,ENST00000369326.5,ENST00000436636.2,ENST00000357327.5	chr3	170843700:170843940:170846502:170846667:170855979:170856168,	170846503	170846667	170846555	170846555	Frame_Shift_Del	C	-	p.S574fs
KIRC	TCGA-B4-5836-01	MAPKAP1	ENST00000420643.1,ENST00000497932.1,ENST00000350766.3,ENST00000373497.5	chr9	128230250:128230388:128246721:128246862:128268588:128268645,128230250:128230388:128246721:128246862:128305337:128305416,	128246722	128246862	128246809	128246810	Frame_Shift_Del	CT	-	p.TV373fs
KIRC	TCGA-B4-5836-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417856	40417856	Frame_Shift_Del	A	-	p.K448fs
KIRC	TCGA-B4-5838-01	MCM9	ENST00000316068.3	chr6	119245127:119245292:119252584:119252903:119256055:119256189,	119252585	119252903	119252784	119252784	Frame_Shift_Del	A	-	p.D35fs
KIRC	TCGA-B4-5838-01	PRR12	ENST00000418929.2	chr19	50117789:50117906:50118132:50118266:50119003:50119476,	50118133	50118266	50118194	50118194	Frame_Shift_Del	A	-	p.E1651fs
KIRC	TCGA-B4-5843-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000434713.2,ENST00000483235.1	chr3	136060282:136060393:136062673:136062848:136067999:136068205,	136062674	136062848	136062680	136062683	Frame_Shift_Del	AAAA	-	p.FL1146fs
KIRC	TCGA-B4-5843-01	TROAP	ENST00000547923.1,ENST00000551245.1,ENST00000551192.1,ENST00000549891.1,ENST00000546735.1,ENST00000257909.3	chr12	49720991:49721113:49722709:49722838:49722943:49723027,	49722710	49722838	49722758	49722758	Frame_Shift_Del	C	-	p.P314fs
KIRC	TCGA-B4-5844-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728367	50728370	Frame_Shift_Del	TGTG	-	p.TQ215fs
KIRC	TCGA-B4-5844-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76919038	76919038	Frame_Shift_Del	T	-	p.N1318fs
KIRC	TCGA-B8-4153-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112765959:112766052:112767524:112767643:112776989:112777099,	112767525	112767643	112767558	112767559	Frame_Shift_Ins	-	A	p.Q665fs
KIRC	TCGA-B8-4153-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188248	10188255	Frame_Shift_Del	AACCAAAC	-	p.NQT131fs
KIRC	TCGA-B8-4620-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125280	47125289	Frame_Shift_Del	TCTTGGCTCC	-	p.RSQE1994fs
KIRC	TCGA-B8-4620-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000360541.5	chr5	137846253:137846318:137846733:137846889:137847163:137847293,	137846734	137846889	137846859	137846862	Frame_Shift_Del	GTGT	-	p.DT264fs
KIRC	TCGA-B8-4620-01	CDH24	ENST00000397359.3,ENST00000267383.5	chr14	23519030:23519152:23521178:23521292:23521681:23521795,	23521179	23521292	23521190	23521190	Frame_Shift_Del	C	-	p.G489fs
KIRC	TCGA-B8-4622-01	FAM13A	ENST00000508360.1,ENST00000264344.5,ENST00000511976.1,ENST00000508369.1,ENST00000503556.1,ENST00000513837.1	chr4	89653272:89653349:89658622:89658706:89660180:89660276,	89658623	89658706	89658635	89658641	Frame_Shift_Del	GAAGAAG	-	p.SFF876fs
KIRC	TCGA-B8-5162-01	PASK	ENST00000358649.4,ENST00000405260.1,ENST00000403638.3,ENST00000234040.4,ENST00000485940.1	chr2	242078166:242078209:242079299:242079470:242079935:242080168,	242079300	242079470	242079401	242079401	Frame_Shift_Del	G	-	p.L167fs
KIRC	TCGA-B8-5162-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188252	10188252	Frame_Shift_Del	A	-	p.Q132fs
KIRC	TCGA-B8-5162-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000511320.1	chr5	176385093:176385155:176395555:176396292:176396601:176396707,	176395556	176396292	176395660	176395663	Frame_Shift_Del	CCCT	-	p.RA365fs
KIRC	TCGA-B8-5162-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7785108:7785222:7786044:7786243:7786753:7786926,	7786045	7786243	7786219	7786220	Frame_Shift_Del	AC	-	p.D795fs
KIRC	TCGA-B8-5162-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-B8-5164-01	CTSE	ENST00000360218.2,ENST00000432969.2,ENST00000358184.2	chr1	206319100:206319218:206320200:206320319:206325237:206325437,	206320201	206320319	206320203	206320203	Frame_Shift_Del	A	-	p.T116fs
KIRC	TCGA-B8-5164-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545454	93545455	Frame_Shift_Del	AG	-	p.KE1395fs
KIRC	TCGA-B8-5164-01	NOL11	ENST00000253247.4,ENST00000581375.1,ENST00000535137.1	chr17	65720224:65720309:65722575:65722764:65730478:65730555,	65722576	65722764	65722693	65722696	Frame_Shift_Del	ATGG	-	p.NG261fs
KIRC	TCGA-B8-5552-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A94fs
KIRC	TCGA-BP-4760-01	TFG	ENST00000490574.1	chr3	100428449:100428565:100432486:100432713:100438818:100438902,100428221:100428275:100432486:100432713:100438818:100438902,	100432487	100432713	100432611	100432611	Frame_Shift_Del	A	-	p.N28fs
KIRC	TCGA-BP-4782-01	UNK	ENST00000293218.3,ENST00000589666.1	chr17	73815819:73815866:73816000:73816189:73818557:73818739,	73816001	73816189	73816152	73816152	Frame_Shift_Del	C	-	p.N676fs
KIRC	TCGA-BP-4801-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108138066:108138069:108139136:108139336:108141790:108141873,	108139137	108139336	108139152	108139155	Frame_Shift_Del	TAGC	-	p.LA885fs
KIRC	TCGA-BP-4960-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717436	73717437	Frame_Shift_Ins	-	A	p.S2783fs
KIRC	TCGA-BP-4960-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649377	52649377	Frame_Shift_Del	T	-	p.K606fs
KIRC	TCGA-BP-4960-01	ADHFE1	ENST00000396623.3,ENST00000496501.1,ENST00000449512.1,ENST00000415254.1,ENST00000379385.4,ENST00000276576.7,ENST00000426810.1,ENST00000424777.2	chr8	67356871:67356983:67357452:67357649:67359498:67359576,	67357453	67357649	67357547	67357547	Frame_Shift_Del	A	-	p.N150fs
KIRC	TCGA-BP-4960-01	CEACAM4	ENST00000600925.1	chr19	42128023:42128141:42131974:42132334:42133267:42133442,	42131975	42132334	42132122	42132123	Frame_Shift_Del	CC	-	p.GA92fs
KIRC	TCGA-BP-4962-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188259	10188260	Frame_Shift_Ins	-	T	p.I135fs
KIRC	TCGA-BP-4962-01	ZMAT3	ENST00000311417.2,ENST00000414084.1,ENST00000432729.1	chr3	178745544:178745600:178748667:178748787:178785270:178785597,	178748668	178748787	178748683	178748683	Frame_Shift_Del	A	-	p.V125fs
KIRC	TCGA-BP-4962-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961876	41961876	Frame_Shift_Del	G	-	p.G262fs
KIRC	TCGA-BP-4963-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97864199:97864228:97864322:97864395:97866070:97866099,	97864323	97864395	97864367	97864367	Frame_Shift_Del	A	-	p.G909fs
KIRC	TCGA-BP-4963-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125643	47125653	Frame_Shift_Del	AGTTTCTTGGG	-	p.PKKL1873fs
KIRC	TCGA-BP-4963-01	SLC35A5	ENST00000261034.2	chr3	112292735:112292803:112299392:112299553:112300025:112300173,	112299393	112299553	112299395	112299396	Frame_Shift_Ins	-	A	p.T144fs
KIRC	TCGA-BP-4963-01	XRCC4	ENST00000282268.3,ENST00000542685.1,ENST00000338635.6,ENST00000509268.1,ENST00000511817.1,ENST00000396027.4	chr5	82406846:82407022:82491588:82491755:82499370:82499526,	82491589	82491755	82491622	82491623	Frame_Shift_Ins	-	A	p.K117fs
KIRC	TCGA-BP-4963-01	HMOX1	ENST00000216117.8	chr22	35779098:35779219:35782677:35783169:35785856:35785956,	35782678	35783169	35782774	35782781	Frame_Shift_Del	GAAGAGCT	-	p.EEL81fs
KIRC	TCGA-BP-4963-01	MPST	ENST00000397129.1,ENST00000429360.2	chr22	37415838:37415913:37420232:37420851:37425256:37425835,	37420233	37420851	37420445	37420445	Frame_Shift_Del	C	-	p.D63fs
KIRC	TCGA-BP-4964-01	PIGV	ENST00000374145.1,ENST00000078527.4	chr1	27117249:27117384:27120603:27121725:27124053:27124298,	27120604	27121725	27121228	27121228	Frame_Shift_Del	T	-	p.F235fs
KIRC	TCGA-BP-4964-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597348	52597348	Frame_Shift_Del	T	-	p.Q1314fs
KIRC	TCGA-BP-4965-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474038	103474039	Frame_Shift_Ins	-	T	p.W567fs
KIRC	TCGA-BP-4965-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225346608:225346795:225360548:225360683:225362469:225362536,	225360549	225360683	225360644	225360645	Frame_Shift_Ins	-	TA	p.W583fs
KIRC	TCGA-BP-4965-01	MUC17	ENST00000379439.3,ENST00000306151.4	chr7	100695083:100695243:100696266:100696428:100696619:100696717,	100696267	100696428	100696355	100696355	Frame_Shift_Del	G	-	p.G4398fs
KIRC	TCGA-BP-4967-01	NEB	ENST00000603639.1,ENST00000424585.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000413693.1,ENST00000397337.2,ENST00000509223.2,ENST00000409198.1,ENST00000172853.10,ENST00000421461.2	chr2	152359862:152359955:152361991:152362084:152362679:152362772,	152361992	152362084	152362014	152362014	Frame_Shift_Del	T	-	p.E7907fs
KIRC	TCGA-BP-4968-01	RNF213	ENST00000336301.6,ENST00000508628.2,ENST00000582970.1,ENST00000558116.1	chr17	78343301:78343471:78343567:78343667:78345673:78345785,	78343568	78343667	78343583	78343584	Frame_Shift_Ins	-	A	p.K4114fs
KIRC	TCGA-BP-4972-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52360155:52360330:52360750:52360907:52361897:52362030,	52360751	52360907	52360871	52360871	Frame_Shift_Del	C	-	p.G234fs
KIRC	TCGA-BP-4974-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-BP-4975-01	PCSK6	ENST00000561444.1,ENST00000348070.1,ENST00000331826.7,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000558716.1,ENST00000398185.2,ENST00000560921.1,ENST00000344273.2,ENST00000560271.1,ENST00000398181.2,ENST00000559417.1,ENST00000559678.1	chr15	101929668:101929769:101933416:101933629:101938608:101938781,	101933417	101933629	101933619	101933619	Frame_Shift_Del	C	-	p.G335fs
KIRC	TCGA-BP-4976-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235940362:235940608:235944164:235944355:235945226:235945387,	235944165	235944355	235944201	235944201	Frame_Shift_Del	A	-	p.F1726fs
KIRC	TCGA-BP-4976-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188299	10188306	Frame_Shift_Del	TTTGCCAA	-	p.FAN148fs
KIRC	TCGA-BP-4976-01	SEPHS1	ENST00000545675.1,ENST00000378614.4	chr10	13380715:13380808:13386757:13387028:13389999:13390030,	13386758	13387028	13386847	13386848	Frame_Shift_Ins	-	G	p.R35fs
KIRC	TCGA-BP-4983-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098412	47098413	Frame_Shift_Ins	-	AT	p.C2288fs
KIRC	TCGA-BP-4983-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751231	102751231	Frame_Shift_Del	A	-	p.T98fs
KIRC	TCGA-BP-4985-01	USP11	ENST00000218348.3,ENST00000469080.1,ENST00000377107.2	chrX	47100984:47101098:47101480:47101705:47101837:47101921,	47101481	47101705	47101652	47101652	Frame_Shift_Del	A	-	p.R451fs
KIRC	TCGA-BP-4986-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188259	10188260	Frame_Shift_Ins	-	T	p.I135fs
KIRC	TCGA-BP-4986-01	CHUK	ENST00000370397.7	chr10	101960427:101960537:101961844:101961906:101964262:101964414,	101961845	101961906	101961883	101961883	Frame_Shift_Del	A	-	p.W511fs
KIRC	TCGA-BP-4986-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000394997.1,ENST00000557538.1	chr14	62211430:62211531:62212408:62212535:62213651:62214190,	62212409	62212535	62212466	62212466	Frame_Shift_Del	C	-	p.R755fs
KIRC	TCGA-BP-4987-01	SFXN4	ENST00000369131.4,ENST00000330036.6,ENST00000461438.1,ENST00000355697.2,ENST00000466218.1	chr10	120907289:120907372:120914573:120914689:120916189:120916268,	120914574	120914689	120914640	120914640	Frame_Shift_Del	A	-	p.I222fs
KIRC	TCGA-BP-4987-01	RIC8B	ENST00000470628.2,ENST00000355478.2,ENST00000462949.1,ENST00000392837.4	chr12	107245227:107245372:107254045:107254190:107279681:107279959,107245227:107245372:107254045:107254190:107264600:107264720,	107254046	107254190	107254049	107254053	Frame_Shift_Del	ATAGT	-	p.DS437fs
KIRC	TCGA-BP-4988-01	TTC32	ENST00000333610.3	chr2	20096403:20096887:20097629:20097796:20101466:20101717,	20097630	20097796	20097726	20097729	Frame_Shift_Del	AATC	-	p.DF73fs
KIRC	TCGA-BP-4991-01	DSTYK	ENST00000367162.3,ENST00000367161.3	chr1	205128674:205128807:205129241:205129398:205130385:205130515,	205129242	205129398	205129247	205129247	Frame_Shift_Del	A	-	p.Y700fs
KIRC	TCGA-BP-4992-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630642	158630642	Frame_Shift_Del	T	-	p.K26fs
KIRC	TCGA-BP-4994-01	DTX3L	ENST00000296161.4	chr3	122287335:122288871:122289301:122289519:122290524:122290594,	122289302	122289519	122289368	122289371	Frame_Shift_Del	AAGG	-	p.KE668fs
KIRC	TCGA-BP-4994-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81942020:81942196:81944124:81944325:81946201:81946321,	81944125	81944325	81944242	81944242	Frame_Shift_Del	C	-	p.Y617fs
KIRC	TCGA-BP-5000-01	ACVR1B	ENST00000563121.1	chr12	52377818:52377950:52378975:52379132:52385646:52385776,	52378976	52379132	52379004	52379005	Frame_Shift_Del	AA	-	p.LK336fs
KIRC	TCGA-BP-5004-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3,ENST00000411772.1	chr15	43720213:43720366:43724391:43724875:43730521:43730605,	43724392	43724875	43724668	43724668	Frame_Shift_Del	C	-	p.Q1128fs
KIRC	TCGA-BP-5007-01	SUPT7L	ENST00000337768.5,ENST00000406540.1,ENST00000464789.2,ENST00000405491.1	chr2	27878231:27878469:27880211:27880536:27883850:27884022,	27880212	27880536	27880496	27880497	Frame_Shift_Del	AG	-	p.SC153fs
KIRC	TCGA-BP-5008-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1703914	1703918	Frame_Shift_Del	GAGCT	-	p.EL257fs
KIRC	TCGA-BP-5009-01	GALNT14	ENST00000481023.1,ENST00000486564.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000356174.3	chr2	31155032:31155060:31165066:31165170:31167723:31167782,	31165067	31165170	31165110	31165110	Frame_Shift_Del	C	-	p.G296fs
KIRC	TCGA-BP-5009-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
KIRC	TCGA-BP-5010-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711969	89711970	Frame_Shift_Ins	-	C	p.Q196fs
KIRC	TCGA-BP-5168-01	MLXIPL	ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3	chr7	73011194:73011262:73011511:73012043:73013855:73013996,	73011512	73012043	73011708	73011708	Frame_Shift_Del	G	-	p.P469fs
KIRC	TCGA-BP-5168-01	KAT6A	ENST00000418721.1,ENST00000265713.2,ENST00000406337.1,ENST00000396930.3	chr8	41798359:41798962:41800310:41800518:41801265:41801497,	41800311	41800518	41800349	41800382	Frame_Shift_Del	CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC	-	p.EEEEEAEEGENE789fs
KIRC	TCGA-BP-5168-01	NOXA1	ENST00000341349.2	chr9	140323360:140323468:140323727:140323835:140325235:140325295,	140323728	140323835	140323753	140323754	Frame_Shift_Ins	-	G	p.R177fs
KIRC	TCGA-BP-5168-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27500363:27500499:27500922:27501064:27503658:27503836,	27500923	27501064	27500985	27500986	Frame_Shift_Ins	-	T	p.A1077fs
KIRC	TCGA-BP-5168-01	SUZ12	ENST00000322652.5,ENST00000580398.1	chr17	30303539:30303633:30310017:30310123:30315338:30315516,	30310018	30310123	30310087	30310088	Frame_Shift_Ins	-	A	p.KK329fs
KIRC	TCGA-BP-5169-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39587067	39587067	Frame_Shift_Del	G	-	p.F774fs
KIRC	TCGA-BP-5170-01	IL12RB2	ENST00000541374.1,ENST00000371000.1,ENST00000262345.1	chr1	67838307:67838466:67845668:67845806:67852261:67852352,	67845669	67845806	67845752	67845761	Frame_Shift_Del	CTGACAGCTG	-	p.LTAA601fs
KIRC	TCGA-BP-5174-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188204	10188219	Frame_Shift_Del	TTTGGCTCTTCAGAGA	-	p.LWLFRD116fs
KIRC	TCGA-BP-5174-01	TMEM168	ENST00000447395.1,ENST00000312814.6,ENST00000454074.1	chr7	112407229:112407799:112412835:112413110:112415230:112415373,	112412836	112413110	112412960	112412960	Frame_Shift_Del	A	-	p.F474fs
KIRC	TCGA-BP-5174-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489924	20489925	Frame_Shift_Ins	-	C	p.LP402fs
KIRC	TCGA-BP-5174-01	ADCY7	ENST00000394697.2,ENST00000254235.3	chr16	50343458:50343557:50344597:50344791:50345603:50345697,	50344598	50344791	50344758	50344758	Frame_Shift_Del	T	-	p.L774fs
KIRC	TCGA-BP-5176-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108935	14108935	Frame_Shift_Del	T	-	p.S1550fs
KIRC	TCGA-BP-5176-01	FAM114A1	ENST00000358869.2,ENST00000512889.1,ENST00000515037.1	chr4	38916541:38916694:38924390:38924514:38930862:38930904,	38924391	38924514	38924467	38924470	Frame_Shift_Del	TCTT	-	p.IF341fs
KIRC	TCGA-BP-5176-01	NSUN6	ENST00000377304.4	chr10	18840751:18840900:18874877:18875022:18885136:18885256,	18874878	18875022	18874976	18874977	Frame_Shift_Ins	-	T	p.Q275fs
KIRC	TCGA-BP-5176-01	SLTM	ENST00000249736.7,ENST00000536328.1,ENST00000559880.1,ENST00000380516.2,ENST00000557950.1,ENST00000557924.1,ENST00000558756.1	chr15	59204761:59204809:59205697:59205895:59209133:59209198,	59205698	59205895	59205785	59205786	Frame_Shift_Del	TA	-	p.L143fs
KIRC	TCGA-BP-5176-01	SFI1	ENST00000486708.1,ENST00000400288.2,ENST00000432498.1,ENST00000524296.1,ENST00000382162.3	chr22	31924675:31924849:31927043:31927115:31942846:31942957,	31927044	31927115	31927108	31927108	Frame_Shift_Del	A	-	p.K111fs
KIRC	TCGA-BP-5177-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58129199:58129340:58131647:58131776:58132546:58132720,	58131648	58131776	58131651	58131652	Frame_Shift_Del	GC	-	p.S1810fs
KIRC	TCGA-BP-5177-01	BMS1	ENST00000374518.5	chr10	43312765:43312942:43315683:43315872:43315955:43316136,	43315684	43315872	43315792	43315792	Frame_Shift_Del	T	-	p.F897fs
KIRC	TCGA-BP-5178-01	ARNTL2	ENST00000544915.1	chr12	27523100:27523163:27529278:27529320:27530373:27530436,27523100:27523163:27529278:27529320:27533179:27533337,27521268:27521345:27529278:27529320:27533179:27533337,	27529279	27529320	27529304	27529304	Frame_Shift_Del	A	-	p.K70fs
KIRC	TCGA-BP-5178-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914662	39914671	Frame_Shift_Del	CCTCCAGGTG	-	p.HLQV934fs
KIRC	TCGA-BP-5180-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050621	202050621	Frame_Shift_Del	T	-	p.F41fs
KIRC	TCGA-BP-5180-01	VWA8	ENST00000281496.6,ENST00000379310.3	chr13	42460916:42460966:42461332:42461497:42465555:42465723,	42461333	42461497	42461418	42461428	Frame_Shift_Del	GGCAAGCCCAA	-	p.LGLP241fs
KIRC	TCGA-BP-5181-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236192849:236193050:236195700:236195952:236201403:236201553,	236195701	236195952	236195855	236195856	Frame_Shift_Ins	-	T	p.C461fs
KIRC	TCGA-BP-5182-01	PTPRB	ENST00000551525.1,ENST00000548122.1,ENST00000538708.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70965603:70965867:70970161:70970425:70974815:70975082,	70970162	70970425	70970258	70970258	Frame_Shift_Del	A	-	p.S916fs
KIRC	TCGA-BP-5183-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235949909	235949910	Frame_Shift_Del	CA	-	p.Q166fs
KIRC	TCGA-BP-5183-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188248	10188248	Frame_Shift_Del	A	-	p.N131fs
KIRC	TCGA-BP-5183-01	ITGA9	ENST00000264741.5	chr3	37818882:37819008:37821392:37821512:37826467:37826569,	37821393	37821512	37821430	37821442	Frame_Shift_Del	ACTGTAACTTTAG	-	p.HCNFS902fs
KIRC	TCGA-BP-5183-01	ITSN1	ENST00000399367.3,ENST00000399326.3,ENST00000381285.4,ENST00000381318.3	chr21	35247663:35247825:35254546:35254759:35255853:35255975,	35254547	35254759	35254745	35254745	Frame_Shift_Del	A	-	p.K1514fs
KIRC	TCGA-BP-5184-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188284	10188287	Frame_Shift_Del	GACG	-	p.DG143fs
KIRC	TCGA-BP-5184-01	OLFM2	ENST00000593091.1,ENST00000264833.4,ENST00000590410.1	chr19	9968062:9968158:9968390:9968537:9971320:9971470,	9968391	9968537	9968474	9968475	Frame_Shift_Ins	-	AT	p.YT92fs
KIRC	TCGA-BP-5185-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-BP-5185-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256041	9256042	Frame_Shift_Del	AA	-	p.K903fs
KIRC	TCGA-BP-5186-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000473795.1,ENST00000359206.3,ENST00000453593.1	chr7	87082259:87082451:87083850:87083908:87092073:87092224,	87083851	87083908	87083894	87083895	Frame_Shift_Ins	-	GCAGG	p.A101fs
KIRC	TCGA-BP-5189-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117112	72117112	Frame_Shift_Del	G	-	p.E627fs
KIRC	TCGA-BP-5189-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117112	72117112	Frame_Shift_Del	G	-	p.E627fs
KIRC	TCGA-BP-5189-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53225097:53225236:53225867:53226226:53226952:53227058,	53225868	53226226	53225887	53225887	Frame_Shift_Del	G	-	p.H921fs
KIRC	TCGA-BP-5192-01	HLA-DRA	ENST00000395388.2	chr6	32410227:32410470:32410961:32411243:32411532:32411698,	32410962	32411243	32410977	32410978	Frame_Shift_Del	CT	-	p.T115fs
KIRC	TCGA-BP-5192-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-BP-5194-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702549	52702555	Frame_Shift_Del	GGAAGTC	-	p.DFQ115fs
KIRC	TCGA-BP-5195-01	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43330368:43330430:43335412:43335593:43339358:43339487,	43335413	43335593	43335474	43335475	Frame_Shift_Ins	-	T	p.I596fs
KIRC	TCGA-BP-5196-01	POC1B	ENST00000539190.2,ENST00000549035.1,ENST00000541909.1,ENST00000313546.3,ENST00000547496.1,ENST00000393179.4,ENST00000549304.1	chr12	89864137:89864271:89865390:89865506:89865944:89866052,	89865391	89865506	89865497	89865498	Frame_Shift_Ins	-	T	p.I60fs
KIRC	TCGA-BP-5196-01	IFT81	ENST00000550156.1,ENST00000242591.5,ENST00000552912.1	chr12	110618226:110618376:110628724:110628853:110630421:110630511,	110628725	110628853	110628765	110628766	Frame_Shift_Del	AC	-	p.Y460fs
KIRC	TCGA-BP-5198-01	ACIN1	ENST00000557515.1,ENST00000555053.1	chr14	23533563:23533697:23535174:23535217:23536522:23537880,23533563:23533697:23535174:23535217:23538684:23538734,23533563:23533694:23535174:23535217:23538684:23538734,	23535175	23535217	23535201	23535207	Frame_Shift_Del	GATTTGG	-	p.PKS817fs
KIRC	TCGA-BP-5198-01	HERC1	ENST00000443617.2	chr15	63953951:63954220:63955182:63955403:63956668:63956793,	63955183	63955403	63955309	63955310	Frame_Shift_Ins	-	TT	p.I2925fs
KIRC	TCGA-BP-5199-01	PPP2R1B	ENST00000534521.1,ENST00000531890.1,ENST00000427203.2,ENST00000311129.5,ENST00000426998.2,ENST00000393055.2,ENST00000527614.1	chr11	111622882:111623056:111624166:111624301:111625222:111625293,	111624167	111624301	111624250	111624251	Frame_Shift_Del	TT	-	p.VI360fs
KIRC	TCGA-BP-5199-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967277	64967280	Frame_Shift_Del	GAAA	-	p.ES742fs
KIRC	TCGA-BP-5199-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465992	59465992	Frame_Shift_Del	A	-	p.G891fs
KIRC	TCGA-BP-5201-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597340	52597340	Frame_Shift_Del	G	-	p.L1317fs
KIRC	TCGA-BP-5202-01	NIT1	ENST00000496768.1,ENST00000368009.2,ENST00000368008.1,ENST00000496861.1,ENST00000368007.4,ENST00000492411.1,ENST00000392190.5,ENST00000485594.1	chr1	161089298:161089402:161089608:161089742:161089896:161090022,	161089609	161089742	161089670	161089683	Frame_Shift_Del	GCCTATGTGTGAAA	-	p.GPMCES173fs
KIRC	TCGA-BP-5202-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-CJ-4869-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439196	52439196	Frame_Shift_Del	T	-	p.N349fs
KIRC	TCGA-CJ-4869-01	ZBTB11	ENST00000312938.4	chr3	101374947:101375092:101378626:101378872:101383381:101383558,	101378627	101378872	101378845	101378846	Frame_Shift_Del	CA	-	p.SA609fs
KIRC	TCGA-CJ-4869-01	CACNA1C	ENST00000347598.4,ENST00000399606.1	chr12	2705039:2705169:2706395:2706455:2711019:2711126,2705039:2705169:2706395:2706455:2706602:2706662,	2706396	2706455	2706417	2706417	Frame_Shift_Del	G	-	p.V939fs
KIRC	TCGA-CJ-4899-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154328	19154329	Frame_Shift_Ins	-	T	p.L159fs
KIRC	TCGA-CJ-4902-01	AGRN	ENST00000379370.2	chr1	978917:979112:979202:979403:979488:979637,	979203	979403	979247	979251	Frame_Shift_Del	GCAGG	-	p.AG615fs
KIRC	TCGA-CJ-4902-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877232	38877235	Frame_Shift_Del	TCTA	-	p.SI123fs
KIRC	TCGA-CJ-4903-01	RAPGEF3	ENST00000548919.1,ENST00000549151.1	chr12	48145698:48145752:48151648:48151861:48164639:48164817,	48151649	48151861	48151827	48151830	Frame_Shift_Del	CCCA	-	p.VG13fs
KIRC	TCGA-CJ-4904-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383536	109383536	Frame_Shift_Del	A	-	p.K2181fs
KIRC	TCGA-CJ-4904-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000505590.1	chr4	100045529:100045617:100047744:100047883:100052654:100052915,100045529:100045617:100047744:100047883:100048359:100048495,	100047745	100047883	100047771	100047771	Frame_Shift_Del	T	-	p.A383fs
KIRC	TCGA-CJ-4905-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRC	TCGA-CJ-4905-01	ANKRD29	ENST00000586087.1,ENST00000322980.9	chr18	21226152:21226251:21229046:21229157:21242673:21242736,	21229047	21229157	21229082	21229083	Frame_Shift_Ins	-	A	p.LQ32fs
KIRC	TCGA-CJ-4908-01	MRPL39	ENST00000307301.7	chr21	26957967:26958066:26960012:26960101:26961146:26961194,	26960013	26960101	26960039	26960039	Frame_Shift_Del	C	-	p.S344fs
KIRC	TCGA-CJ-4913-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629104	18629105	Frame_Shift_Ins	-	A	p.L121fs
KIRC	TCGA-CJ-4918-01	RABGAP1L	ENST00000347255.2,ENST00000251507.4,ENST00000325589.5,ENST00000367687.1	chr1	174721450:174721492:174780969:174781098:174926593:174926686,	174780970	174781098	174781011	174781011	Frame_Shift_Del	T	-	p.A70fs
KIRC	TCGA-CJ-4920-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125684	47125684	Frame_Shift_Del	G	-	p.T1862fs
KIRC	TCGA-CJ-5686-01	SPG7	ENST00000561911.1,ENST00000268704.2	chr16	89614410:89614521:89616901:89617017:89619386:89619487,	89616902	89617017	89616909	89616910	Frame_Shift_Ins	-	A	p.AK557fs
KIRC	TCGA-CJ-6027-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52661288:52661386:52662909:52663051:52668617:52668831,	52662910	52663051	52663010	52663010	Frame_Shift_Del	A	-	p.L416fs
KIRC	TCGA-CJ-6027-01	AVL9	ENST00000404479.1,ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32582866:32582873:32584305:32584391:32588458:32588530,	32584306	32584391	32584314	32584314	Frame_Shift_Del	T	-	p.F76fs
KIRC	TCGA-CJ-6027-01	YIF1A	ENST00000471387.2,ENST00000526497.1,ENST00000376901.4	chr11	66052393:66052437:66052851:66053007:66053171:66053229,	66052852	66053007	66052992	66052996	Frame_Shift_Del	CACCT	-	p.EV166fs
KIRC	TCGA-CJ-6030-01	MED13	ENST00000397786.2	chr17	60050087:60050249:60059558:60060475:60061531:60061728,	60059559	60060475	60059957	60059957	Frame_Shift_Del	T	-	p.N1137fs
KIRC	TCGA-CJ-6030-01	DHPS	ENST00000210060.7,ENST00000594424.1,ENST00000595844.1,ENST00000351660.5,ENST00000595912.1,ENST00000596162.1,ENST00000601639.1,ENST00000597152.1,ENST00000598850.1,ENST00000601537.1	chr19	12788141:12788210:12790270:12790357:12790436:12790533,	12790271	12790357	12790293	12790302	Frame_Shift_Del	GACTCTGGGT	-	p.NPES216fs
KIRC	TCGA-CJ-6032-01	HMGN2	ENST00000464888.1	chr1	26799009:26799118:26799973:26800223:26800575:26800619,	26799974	26800223	26799998	26799998	Frame_Shift_Del	A	-	p.K14fs
KIRC	TCGA-CJ-6032-01	HMGN2	ENST00000463817.1	chr1	26799090:26799118:26799973:26800076:26800193:26800223,	26799974	26800076	26799998	26799998	Frame_Shift_Del	A	-	p.K14fs
KIRC	TCGA-CJ-6032-01	HMGN2	ENST00000467700.1,ENST00000361427.5,ENST00000460563.1	chr1	26799090:26799118:26799973:26800018:26800193:26800223,	26799974	26800018	26799998	26799998	Frame_Shift_Del	A	-	p.K14fs
KIRC	TCGA-CJ-6032-01	ANXA13	ENST00000419625.1,ENST00000520519.1,ENST00000262219.6	chr8	124707927:124707961:124710628:124710799:124714881:124714976,	124710629	124710799	124710771	124710781	Frame_Shift_Del	AGCTCACTCTT	-	p.KSEL110fs
KIRC	TCGA-CJ-6032-01	TYR	ENST00000263321.5	chr11	88960990:88961138:89017940:89018122:89028310:89028476,	89017941	89018122	89017963	89017964	Frame_Shift_Ins	-	G	p.A403fs
KIRC	TCGA-CJ-6033-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
KIRC	TCGA-CW-5580-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588748	52588748	Frame_Shift_Del	G	-	p.P1449fs
KIRC	TCGA-CW-6090-01	AKR1B1	ENST00000285930.4,ENST00000487438.1,ENST00000434222.1,ENST00000498771.1,ENST00000465351.1	chr7	134133748:134133871:134134471:134134549:134135537:134135654,	134134472	134134549	134134487	134134487	Frame_Shift_Del	A	-	p.I138fs
KIRC	TCGA-CW-6093-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188224	10188224	Frame_Shift_Del	G	-	p.G123fs
KIRC	TCGA-CW-6093-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149699871	149699872	Frame_Shift_Ins	-	T	p.S274fs
KIRC	TCGA-CW-6093-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46431825:46431918:46439462:46439602:46455023:46455178,	46439463	46439602	46439573	46439574	Frame_Shift_Del	AG	-	p.P1002fs
KIRC	TCGA-CW-6097-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437530	52437533	Frame_Shift_Del	ATGC	-	p.CI543fs
KIRC	TCGA-CZ-4853-01	CACHD1	ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65095046:65095164:65098281:65098426:65099726:65099943,	65098282	65098426	65098290	65098290	Frame_Shift_Del	A	-	p.Y218fs
KIRC	TCGA-CZ-4853-01	HVCN1	ENST00000356742.5,ENST00000548312.1,ENST00000242607.8,ENST00000439744.2	chr12	111087972:111088085:111089021:111089253:111093038:111093143,	111089022	111089253	111089051	111089052	Frame_Shift_Ins	-	T	p.A205fs
KIRC	TCGA-CZ-4853-01	PCSK6	ENST00000561444.1,ENST00000348070.1,ENST00000331826.7,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000558716.1,ENST00000398185.2,ENST00000560921.1,ENST00000344273.2,ENST00000560271.1,ENST00000398181.2,ENST00000559417.1,ENST00000559678.1	chr15	101933416:101933629:101938608:101938781:101968096:101968185,	101938609	101938781	101938736	101938737	Frame_Shift_Del	TT	-	p.K289fs
KIRC	TCGA-CZ-4853-01	SEPT4	ENST00000584528.1	chr17	56603580:56603674:56604042:56604339:56606475:56606564,56603580:56603674:56604042:56604339:56608840:56608912,56603580:56603674:56604042:56604339:56616472:56616519,56603580:56603674:56604042:56604339:56609321:56609398,56603675:56603771:56604042:56604339:56609321:56609398,	56604043	56604339	56604046	56604064	Frame_Shift_Del	AGAGGAATCATAGGGATCA	-	p.LDPYDSS93fs
KIRC	TCGA-CZ-4856-01	WDR25	ENST00000335290.6	chr14	100842775:100842832:100847246:100848083:100934357:100934505,100842769:100842841:100847246:100848083:100934357:100934505,100842877:100843041:100847246:100848083:100934357:100934505,	100847247	100848083	100847481	100847481	Frame_Shift_Del	G	-	p.G75fs
KIRC	TCGA-CZ-4859-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188305	10188306	Frame_Shift_Ins	-	AT	p.Y150fs
KIRC	TCGA-CZ-4859-01	ZZEF1	ENST00000573183.1,ENST00000571436.1,ENST00000572426.1,ENST00000381638.2	chr17	3937308:3937586:3945722:3945862:3947517:3947668,	3945723	3945862	3945851	3945851	Frame_Shift_Del	A	-	p.S2060fs
KIRC	TCGA-CZ-4859-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000578199.1,ENST00000540042.1,ENST00000269571.5,ENST00000582648.1,ENST00000584601.1,ENST00000583038.1,ENST00000540147.1,ENST00000582788.1	chr17	37868639:37868701:37871538:37871612:37871698:37871759,	37871539	37871612	37871549	37871550	Frame_Shift_Ins	-	C	p.Q357fs
KIRC	TCGA-CZ-5982-01	SIRT1	ENST00000432464.1,ENST00000212015.6,ENST00000406900.1,ENST00000403579.1	chr10	69669012:69669199:69672230:69672788:69676021:69678143,	69672231	69672788	69672600	69672600	Frame_Shift_Del	A	-	p.E577fs
KIRC	TCGA-CZ-5984-01	CSGALNACT2	ENST00000374464.1,ENST00000374466.3	chr10	43650344:43651258:43654162:43654379:43655941:43656043,	43654163	43654379	43654206	43654207	Frame_Shift_Ins	-	T	p.LF235fs
KIRC	TCGA-CZ-5984-01	LTBP2	ENST00000556206.1	chr14	74973408:74973526:74973881:74974013:74974675:74974798,74973408:74973526:74973881:74974013:74975306:74975432,	74973882	74974013	74973938	74973938	Frame_Shift_Del	C	-	p.R1284fs
KIRC	TCGA-CZ-5985-01	MYLK	ENST00000464489.1,ENST00000360304.3,ENST00000504946.1,ENST00000346322.5,ENST00000359169.1,ENST00000475616.1,ENST00000360772.3	chr3	123401070:123401157:123411581:123411698:123418866:123419852,	123411582	123411698	123411694	123411694	Frame_Shift_Del	T	-	p.S1151fs
KIRC	TCGA-CZ-5985-01	ACSM5	ENST00000570305.1,ENST00000331849.4	chr16	20432595:20432723:20435237:20435391:20439109:20439189,	20435238	20435391	20435331	20435332	Frame_Shift_Ins	-	A	p.W288fs
KIRC	TCGA-CZ-5986-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52685779:52685826:52692214:52692331:52696148:52696292,	52692215	52692331	52692236	52692236	Frame_Shift_Del	A	-	p.F208fs
KIRC	TCGA-CZ-5987-01	MORF4L1	ENST00000558746.1,ENST00000379535.4,ENST00000558502.1,ENST00000426013.2,ENST00000560710.1,ENST00000331268.5,ENST00000560422.1,ENST00000559158.1,ENST00000559345.1	chr15	79184556:79184655:79185880:79185969:79186399:79186476,	79185881	79185969	79185949	79185950	Frame_Shift_Ins	-	C	p.W243fs
KIRC	TCGA-CZ-5987-01	CPNE7	ENST00000529800.1,ENST00000319518.8,ENST00000268720.5	chr16	89657414:89657466:89657534:89657668:89661774:89661831,	89657535	89657668	89657660	89657660	Frame_Shift_Del	A	-	p.K507fs
KIRC	TCGA-CZ-5989-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188202	10188212	Frame_Shift_Del	CCTTTGGCTCT	-	p.HLWLF115fs
KIRC	TCGA-CZ-5989-01	KIF18A	ENST00000533466.1,ENST00000263181.6	chr11	28112955:28113060:28116189:28116347:28119169:28119434,	28116190	28116347	28116237	28116244	Frame_Shift_Del	CATCCATG	-	p.CMDE143fs
KIRC	TCGA-CZ-5989-01	CORO1B	ENST00000539724.1,ENST00000393893.1,ENST00000341356.5,ENST00000537042.1	chr11	67205753:67205972:67206141:67206420:67207256:67207314,	67206142	67206420	67206198	67206199	Frame_Shift_Ins	-	G	p.L430fs
KIRC	TCGA-EU-5904-01	NCAPG	ENST00000251496.2	chr4	17816896:17816981:17818883:17819076:17819561:17819711,	17818884	17819076	17819025	17819026	Frame_Shift_Ins	-	AA	p.Y306fs
KIRC	TCGA-EU-5904-01	PPP1R12A	ENST00000437004.2	chr12	80175594:80175642:80182427:80182563:80184246:80184263,	80182428	80182563	80182470	80182471	Frame_Shift_Ins	-	T	p.*920fs
KIRC	TCGA-EU-5905-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188260	10188260	Frame_Shift_Del	T	-	p.L135fs
KIRC	TCGA-EU-5905-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51875106:51875257:51882207:51882427:51887598:51887742,	51882208	51882427	51882422	51882423	Frame_Shift_Ins	-	G	p.G1796fs
KIRC	TCGA-EU-5906-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134233012	134233013	Frame_Shift_Del	TG	-	p.C180fs
KIRP	TCGA-5P-A9KA-01	CD33	ENST00000391796.3,ENST00000262262.4	chr19	51728353:51728411:51728473:51728854:51729058:51729337,	51728474	51728854	51728819	51728820	Frame_Shift_Ins	-	T	p.S128fs
KIRP	TCGA-5P-A9KA-01	TRAPPC6B	ENST00000347691.5,ENST00000554018.1	chr14	39623414:39623498:39627488:39627606:39628653:39628754,39621014:39621043:39627488:39627606:39628653:39628754,39623414:39623498:39627488:39627606:39628686:39628754,39621014:39621043:39627488:39627606:39628686:39628754,	39627489	39627606	39627583	39627583	Frame_Shift_Del	A	-	p.F58fs
KIRP	TCGA-5P-A9KA-01	ZC3H7A	ENST00000571405.1,ENST00000571198.1,ENST00000355758.4,ENST00000396516.2	chr16	11855803:11855899:11856526:11856603:11857333:11857515,	11856527	11856603	11856530	11856530	Frame_Shift_Del	C	-	p.Q693fs
KIRP	TCGA-Y8-A894-01	PPM1M	ENST00000296487.4,ENST00000409502.3,ENST00000489606.1,ENST00000457351.2,ENST00000482724.1,ENST00000323588.4	chr3	52282652:52282716:52282971:52283079:52283189:52283338,	52282972	52283079	52282984	52282984	Frame_Shift_Del	G	-	p.L330fs
KIRP	TCGA-2Z-A9JQ-01	PLS1	ENST00000483373.1,ENST00000495744.1,ENST00000497199.1	chr3	142346657:142346750:142383043:142383149:142388231:142388261,142364137:142364422:142383043:142383149:142388231:142388261,	142383044	142383149	142383093	142383093	Frame_Shift_Del	C	-	p.T5fs
KIRP	TCGA-2Z-A9JQ-01	FKBP10	ENST00000489591.1	chr17	39975579:39975651:39975781:39976301:39976520:39976713,	39975782	39976301	39975893	39975893	Frame_Shift_Del	C	-	p.I343fs
KIRP	TCGA-2Z-A9JQ-01	FKBP10	ENST00000321562.4	chr17	39975543:39975651:39975781:39975927:39976092:39976275,39975579:39975651:39975781:39975927:39976520:39976713,	39975782	39975927	39975893	39975893	Frame_Shift_Del	C	-	p.I343fs
KIRP	TCGA-2Z-A9JQ-01	SFTPD	ENST00000444384.3,ENST00000372292.3	chr10	81701709:81701826:81702143:81702260:81702518:81702626,	81702144	81702260	81702210	81702210	Frame_Shift_Del	G	-	p.L123fs
KIRP	TCGA-2Z-A9JQ-01	PLS1	ENST00000483373.1,ENST00000495744.1,ENST00000497199.1	chr3	142346657:142346750:142383043:142383149:142388231:142388261,142364137:142364422:142383043:142383149:142388231:142388261,	142383044	142383149	142383090	142383093	Frame_Shift_Del	GTAC	-	p.4_5del
KIRP	TCGA-2Z-A9JQ-01	NAV2	ENST00000360655.4,ENST00000396085.1,ENST00000349880.4	chr11	19890470:19890543:19901414:19901673:19913979:19914140,	19901415	19901673	19901514	19901521	Frame_Shift_Del	CACCTCTG	-	p.204_206del
KIRP	TCGA-MH-A854-01	TFR2	ENST00000465294.1,ENST00000462107.1,ENST00000431692.1,ENST00000474947.1	chr7	100238308:100238495:100238598:100238851:100239099:100239137,	100238599	100238851	100238810	100238819	Frame_Shift_Del	ACGCTGGTAG	-	p.23_26del
KIRP	TCGA-MH-A854-01	WDR44	ENST00000371822.5	chrX	117521302:117521377:117526594:117527234:117528017:117528148,117512381:117512415:117526594:117527234:117528017:117528148,	117526595	117527234	117526809	117526809	Frame_Shift_Del	A	-	p.E134fs
KIRP	TCGA-A4-7585-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138452043	138452043	Frame_Shift_Del	A	-	p.G401fs
KIRP	TCGA-A4-7585-01	GAA	ENST00000572080.1,ENST00000302262.3,ENST00000390015.3	chr17	78084800:78084824:78085781:78085899:78086376:78086510,	78085782	78085899	78085893	78085894	Frame_Shift_Del	CC	-	p.583_583del
KIRP	TCGA-A4-7585-01	PPRC1	ENST00000278070.2,ENST00000413464.2	chr10	103897606:103897795:103898375:103898522:103898635:103898737,	103898376	103898522	103898442	103898442	Frame_Shift_Del	A	-	p.D136fs
KIRP	TCGA-5P-A9JW-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62219289:62219519:62221699:62221947:62223288:62223458,	62221700	62221947	62221902	62221902	Frame_Shift_Del	A	-	p.D2029fs
KIRP	TCGA-A4-A5Y1-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098859	47098859	Frame_Shift_Del	G	-	p.Q2139fs
KIRP	TCGA-A4-A5Y1-01	SENP5	ENST00000323460.5	chr3	196594815:196594944:196612021:196613565:196626536:196626642,	196612022	196613565	196612951	196612952	Frame_Shift_Ins	-	T	p.S300fs
KIRP	TCGA-A4-A5Y1-01	FGGY	ENST00000495718.1,ENST00000371218.4,ENST00000371212.1,ENST00000303721.7,ENST00000485720.1,ENST00000430447.1,ENST00000475949.1,ENST00000474476.1	chr1	59977987:59978111:60019795:60019899:60073474:60073582,	60019796	60019899	60019871	60019884	Frame_Shift_Del	TCTGTGGAACGTCT	-	p.292_296del
KIRP	TCGA-A4-A5Y1-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098859	47098860	Frame_Shift_Del	GC	-	p.2139_2139del
KIRP	TCGA-BQ-5878-01	RAB6A	ENST00000336083.3,ENST00000537446.1,ENST00000310653.6,ENST00000536566.1,ENST00000541973.1	chr11	73390730:73390765:73418464:73418558:73427295:73427407,	73418465	73418558	73418504	73418504	Frame_Shift_Del	A	-	p.I153fs
KIRP	TCGA-G7-A8LC-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51131967	51131967	Frame_Shift_Del	G	-	p.Y156fs
KIRP	TCGA-B3-3925-01	OGG1	ENST00000429146.1,ENST00000416333.1	chr3	9796387:9796569:9798154:9798305:9798450:9798500,9793586:9793633:9798154:9798305:9798450:9798500,	9798155	9798305	9798226	9798227	Frame_Shift_Ins	-	AA	p.H273fs
KIRP	TCGA-IA-A83V-01	TM7SF2	ENST00000527968.1	chr11	64882384:64882553:64882785:64882866:64882947:64882986,64882384:64882553:64882785:64882866:64883364:64883429,	64882786	64882866	64882832	64882832	Frame_Shift_Del	T	-	p.T313fs
KIRP	TCGA-IA-A83V-01	AARS2	ENST00000244571.4	chr6	44274985:44275131:44278035:44278180:44278730:44278898,	44278036	44278180	44278164	44278164	Frame_Shift_Del	G	-	p.L256fs
KIRP	TCGA-B9-A8YH-01	SCGB2B2	ENST00000601241.1,ENST00000379204.2	chr19	35084346:35084504:35085079:35085264:35085407:35085490,	35085080	35085264	35085225	35085226	Frame_Shift_Del	AC	-	p.34_34del
KIRP	TCGA-B9-A8YH-01	TAF2	ENST00000378164.2	chr8	120818522:120818641:120831585:120831746:120843916:120843971,	120831586	120831746	120831745	120831745	Frame_Shift_Del	C	-	p.G47fs
KIRP	TCGA-B9-A8YH-01	ARSE	ENST00000540563.1,ENST00000381134.3,ENST00000545496.1	chrX	2864038:2864175:2867344:2867768:2871183:2871269,	2867345	2867768	2867593	2867593	Frame_Shift_Del	T	-	p.V203fs
KIRP	TCGA-B9-A8YH-01	PLXNA3	ENST00000369682.3	chrX	153695399:153695493:153695574:153695814:153695887:153696031,	153695575	153695814	153695615	153695615	Frame_Shift_Del	C	-	p.A1081fs
KIRP	TCGA-IA-A83T-01	SCFD2	ENST00000388940.4,ENST00000401642.3	chr4	54011499:54011749:54139992:54140168:54179802:54179930,	54139993	54140168	54140020	54140020	Frame_Shift_Del	A	-	p.L429fs
KIRP	TCGA-AL-3467-01	ZMYND15	ENST00000269289.6,ENST00000573751.2,ENST00000433935.1,ENST00000574829.1,ENST00000592813.1	chr17	4644876:4645111:4645209:4645365:4645625:4645786,	4645210	4645365	4645266	4645266	Frame_Shift_Del	G	-	p.R295fs
KIRP	TCGA-IZ-A6M8-01	ANKRD29	ENST00000586087.1,ENST00000591280.1	chr18	21209820:21209915:21214014:21214113:21218812:21218907,21209820:21209915:21214014:21214113:21226152:21226251,	21214015	21214113	21214112	21214112	Frame_Shift_Del	T	-	p.D111fs
KIRP	TCGA-IZ-A6M8-01	MEFV	ENST00000537682.1,ENST00000538326.1	chr16	3299430:3299780:3304157:3304790:3306310:3306587,	3304158	3304790	3304171	3304171	Frame_Shift_Del	T	-	p.H300fs
KIRP	TCGA-IZ-A6M8-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106508582	106508582	Frame_Shift_Del	C	-	p.D192fs
KIRP	TCGA-WN-A9G9-01	MNDA	ENST00000368141.4	chr1	158813744:158813912:158815376:158815793:158817517:158817679,	158815377	158815793	158815387	158815387	Frame_Shift_Del	C	-	p.T194fs
KIRP	TCGA-WN-A9G9-01	TARBP1	ENST00000481183.1,ENST00000040877.1	chr1	234536926:234537008:234541648:234541845:234546190:234546277,	234541649	234541845	234541785	234541786	Frame_Shift_Ins	-	AA	p.S1285fs
KIRP	TCGA-5P-A9KE-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29821690	29821690	Frame_Shift_Del	C	-	p.E536fs
KIRP	TCGA-5P-A9KE-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123339811:123339952:123340097:123340159:123340377:123340450,	123340098	123340159	123340130	123340131	Frame_Shift_Ins	-	C	p.G342fs
KIRP	TCGA-V9-A7HT-01	CNTNAP5	ENST00000431078.1	chr2	125530375:125530594:125547478:125547718:125555672:125555897,	125547479	125547718	125547712	125547712	Frame_Shift_Del	A	-	p.C994X
KIRP	TCGA-V9-A7HT-01	URB1	ENST00000382751.3	chr21	33688776:33689376:33689986:33690228:33691526:33691724,	33689987	33690228	33690029	33690033	Frame_Shift_Del	GGTCT	-	p.1997_1998del
KIRP	TCGA-5P-A9JZ-01	FAM71F1	ENST00000485070.1	chr7	128358981:128359137:128363250:128363372:128366887:128366922,	128363251	128363372	128363339	128363339	Frame_Shift_Del	T	-	p.I259fs
KIRP	TCGA-5P-A9JZ-01	SMAP1	ENST00000316999.5,ENST00000370455.3	chr6	71566561:71566733:71567624:71567932:71569902:71570869,	71567625	71567932	71567632	71567633	Frame_Shift_Del	TA	-	p.323_323del
KIRP	TCGA-B9-A69E-01	DOK7	ENST00000507039.1	chr4	3475132:3475363:3478068:3478258:3487265:3487385,	3478069	3478258	3478120	3478121	Frame_Shift_Ins	-	GGCTA	p.P128fs
KIRP	TCGA-B9-A69E-01	DOK7	ENST00000340083.5,ENST00000389653.2	chr4	3475132:3475363:3478068:3478269:3487265:3487385,	3478069	3478269	3478120	3478121	Frame_Shift_Ins	-	GGCTA	p.P128fs
KIRP	TCGA-B9-A69E-01	EFCAB13	ENST00000331493.2,ENST00000523842.1,ENST00000517484.1,ENST00000520776.1,ENST00000522326.1	chr17	45456547:45456619:45468802:45468946:45471390:45471465,	45468803	45468946	45468874	45468875	Frame_Shift_Ins	-	G	p.C552fs
KIRP	TCGA-GL-A9DC-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77403529:77403658:77407539:77407686:77411656:77411809,	77407540	77407686	77407567	77407567	Frame_Shift_Del	A	-	p.P838fs
KIRP	TCGA-GL-A9DC-01	BCAS1	ENST00000434986.2	chr20	52561464:52561535:52569970:52570234:52591927:52591969,52561464:52561535:52569970:52570234:52583444:52583612,52561464:52561535:52569970:52570234:52601825:52601972,	52569971	52570234	52569985	52569991	Frame_Shift_Del	AGCCCCC	-	p.554_556del
KIRP	TCGA-BQ-7046-01	RSPRY1	ENST00000537866.1,ENST00000564530.1,ENST00000394420.4	chr16	57255183:57255327:57261253:57261365:57264622:57264725,	57261254	57261365	57261323	57261323	Frame_Shift_Del	A	-	p.Y410X
KIRP	TCGA-BQ-7046-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698866	30698866	Frame_Shift_Del	A	-	p.R240fs
KIRP	TCGA-UZ-A9PK-01	DPCD	ENST00000370151.4,ENST00000434727.1,ENST00000370147.1,ENST00000370148.2	chr10	103354458:103354495:103360494:103360619:103360959:103361093,	103360495	103360619	103360511	103360512	Frame_Shift_Ins	-	A	p.V54fs
KIRP	TCGA-UZ-A9PK-01	NRDE2	ENST00000553409.1,ENST00000357904.3,ENST00000354366.3	chr14	90767582:90767716:90769063:90769469:90770278:90770726,	90769064	90769469	90769166	90769166	Frame_Shift_Del	T	-	p.I437fs
KIRP	TCGA-UZ-A9PK-01	LDLR	ENST00000545707.1	chr19	11213339:11213462:11217240:11217363:11218067:11218185,	11217241	11217363	11217362	11217363	Frame_Shift_Del	TG	-	p.272_272del
KIRP	TCGA-UZ-A9PK-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1,ENST00000414826.1	chr3	175181188:175181281:175184766:175184972:175189426:175189546,	175184767	175184972	175184939	175184939	Frame_Shift_Del	T	-	p.A500fs
KIRP	TCGA-F9-A8NY-01	ARHGAP29	ENST00000370217.3,ENST00000552844.1,ENST00000260526.6	chr1	94668099:94668288:94668473:94668554:94668655:94668766,	94668474	94668554	94668545	94668554	Frame_Shift_Del	CAAGTAGAGG	-	p.292_295del
KIRP	TCGA-UZ-A9PR-01	CP	ENST00000264613.6,ENST00000490639.1	chr3	148928144:148928166:148930237:148930485:148939433:148939611,	148930238	148930485	148930300	148930300	Frame_Shift_Del	T	-	p.N111fs
KIRP	TCGA-5P-A9K0-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218712606	218712607	Frame_Shift_Ins	-	A	p.S753fs
KIRP	TCGA-5P-A9K0-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44948987:44949175:44949967:44950109:44966654:44966781,	44949968	44950109	44950075	44950075	Frame_Shift_Del	A	-	p.I1281fs
KIRP	TCGA-5P-A9K0-01	TFRC	ENST00000540528.1,ENST00000420415.1	chr3	195798873:195799023:195800800:195800996:195802029:195802231,195798873:195799023:195800800:195800996:195803934:195803976,	195800801	195800996	195800989	195800990	Frame_Shift_Ins	-	AT	p.M82fs
KIRP	TCGA-5P-A9K0-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345322	119345322	Frame_Shift_Del	A	-	p.T273fs
KIRP	TCGA-2Z-A9J2-01	WDR27	ENST00000546525.1,ENST00000479310.1	chr6	170036466:170036600:170038634:170038756:170043792:170043882,170034523:170034621:170038634:170038756:170043792:170043882,	170038635	170038756	170038673	170038674	Frame_Shift_Del	TT	-	p.611_611del
KIRP	TCGA-2Z-A9J2-01	NUP54	ENST00000502850.1	chr4	77052382:77052437:77053675:77053872:77065301:77065445,	77053676	77053872	77053755	77053755	Frame_Shift_Del	T	-	p.L277fs
KIRP	TCGA-2Z-A9J2-01	WDR27	ENST00000546525.1,ENST00000479310.1	chr6	170036466:170036600:170038634:170038756:170043792:170043882,170034523:170034621:170038634:170038756:170043792:170043882,	170038635	170038756	170038676	170038680	Frame_Shift_Del	GCAGG	-	p.609_610del
KIRP	TCGA-2Z-A9J2-01	WDR27	ENST00000546525.1,ENST00000479310.1	chr6	170036466:170036600:170038634:170038756:170043792:170043882,170034523:170034621:170038634:170038756:170043792:170043882,	170038635	170038756	170038673	170038680	Frame_Shift_Del	TTCGCAGG	-	p.609_611del
KIRP	TCGA-2Z-A9J2-01	ARHGEF19	ENST00000478117.1	chr1	16528276:16528356:16528910:16529035:16531253:16531414,	16528911	16529035	16529006	16529007	Frame_Shift_Ins	-	CTCAGGTCCCGCACCTGCAGCTCAGCCAT	p.S657_L658delinsRWLSCRCGTX
KIRP	TCGA-2Z-A9J2-01	ARHGEF19	ENST00000270747.3	chr1	16528276:16528356:16528910:16529069:16531253:16531414,	16528911	16529069	16529006	16529007	Frame_Shift_Ins	-	CTCAGGTCCCGCACCTGCAGCTCAGCCAT	p.S657_L658delinsRWLSCRCGTX
KIRP	TCGA-BQ-5879-01	LSM14A	ENST00000540746.2,ENST00000588582.2,ENST00000544216.3,ENST00000586157.1,ENST00000433627.5	chr19	34706500:34706566:34710295:34710478:34710610:34710782,	34710296	34710478	34710448	34710449	Frame_Shift_Del	AG	-	p.311_312del
KIRP	TCGA-BQ-5879-01	ACTR1B	ENST00000451664.1	chr2	98274686:98274779:98274889:98275466:98275814:98275940,	98274890	98275466	98275011	98275014	Frame_Shift_Del	GAGT	-	p.178_179del
KIRP	TCGA-BQ-5879-01	ACTR1B	ENST00000289228.5	chr2	98274722:98274779:98274889:98275106:98275341:98275466,	98274890	98275106	98275011	98275014	Frame_Shift_Del	GAGT	-	p.178_179del
KIRP	TCGA-GL-7773-01	PBX1	ENST00000367897.1,ENST00000401534.1	chr1	164776778:164776914:164781226:164781386:164790773:164790820,	164781227	164781386	164781319	164781320	Frame_Shift_Ins	-	GTATA	p.A310fs
KIRP	TCGA-J7-6720-01	ING4	ENST00000341550.4,ENST00000437149.2,ENST00000396807.4,ENST00000469749.1,ENST00000467678.1,ENST00000412586.2,ENST00000444704.2,ENST00000488381.1,ENST00000472002.1,ENST00000446105.2	chr12	6760530:6760551:6761436:6761584:6761827:6761933,	6761437	6761584	6761549	6761549	Frame_Shift_Del	C	-	p.G179fs
KIRP	TCGA-BQ-7051-01	MATN2	ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000523490.1,ENST00000524308.1	chr8	98900302:98900470:98943180:98943750:98954004:98954127,	98943181	98943750	98943606	98943609	Frame_Shift_Del	CTAA	-	p.189_190del
KIRP	TCGA-BQ-7051-01	ADAMTS20	ENST00000389420.3,ENST00000553158.1	chr12	43822437:43822602:43823419:43823527:43824154:43824274,	43823420	43823527	43823478	43823478	Frame_Shift_Del	A	-	p.L1144fs
KIRP	TCGA-BQ-7051-01	COX5A	ENST00000562233.1	chr15	75219106:75219228:75221456:75221573:75230255:75230407,75212652:75212783:75221456:75221573:75230255:75230407,	75221457	75221573	75221461	75221461	Frame_Shift_Del	A	-	p.K72fs
KIRP	TCGA-WN-AB4C-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000605210.1,ENST00000454282.1	chr5	72192284:72192383:72192882:72192978:72195832:72195908,	72192883	72192978	72192967	72192968	Frame_Shift_Ins	-	AG	p.L776fs
KIRP	TCGA-WN-AB4C-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470102	161470103	Frame_Shift_Del	AG	-	p.266_266del
KIRP	TCGA-WN-AB4C-01	GAPVD1	ENST00000265956.4,ENST00000495955.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000394105.2	chr9	128103513:128103543:128104497:128104578:128109097:128109220,	128104498	128104578	128104522	128104522	Frame_Shift_Del	A	-	p.E1024fs
KIRP	TCGA-WN-AB4C-01	BIRC6	ENST00000421745.2	chr2	32737999:32738221:32740056:32740837:32743320:32743464,	32740057	32740837	32740159	32740160	Frame_Shift_Ins	-	TC	p.F3557fs
KIRP	TCGA-GL-A9DE-01	NPC2	ENST00000554482.1	chr14	74951117:74951290:74953031:74953139:74959895:74959945,74947413:74947482:74953031:74953139:74959895:74959945,	74953032	74953139	74953056	74953057	Frame_Shift_Del	TG	-	p.56_56del
KIRP	TCGA-GL-A9DE-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678783	52678784	Frame_Shift_Ins	-	T	p.I279fs
KIRP	TCGA-DW-7834-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980419	201980420	Frame_Shift_Ins	-	G	p.E52fs
KIRP	TCGA-DW-7834-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980419	201980420	Frame_Shift_Ins	-	G	p.E52fs
KIRP	TCGA-A4-A5XZ-01	YIPF3	ENST00000511831.1,ENST00000506469.1,ENST00000416380.2,ENST00000503972.1,ENST00000490447.2,ENST00000455768.2,ENST00000502714.1,ENST00000372422.2	chr6	43481333:43481371:43483332:43483439:43483626:43483784,	43483333	43483439	43483379	43483379	Frame_Shift_Del	T	-	p.I117fs
KIRP	TCGA-A4-A5XZ-01	YIPF3	ENST00000510102.1	chr6	43481333:43481371:43483343:43483439:43483626:43483784,	43483344	43483439	43483379	43483379	Frame_Shift_Del	T	-	p.I117fs
KIRP	TCGA-A4-A5XZ-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26850978:26851110:26851520:26851985:26854268:26854379,	26851521	26851985	26851949	26851949	Frame_Shift_Del	C	-	p.L184fs
KIRP	TCGA-A4-A5XZ-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971551	52971551	Frame_Shift_Del	G	-	p.R280fs
KIRP	TCGA-UZ-A9PS-01	NPM1	ENST00000351986.6,ENST00000296930.5,ENST00000518587.1,ENST00000393820.2,ENST00000517671.1	chr5	170814936:170815010:170818308:170818428:170818709:170818753,170817097:170817134:170818308:170818428:170818709:170818753,	170818309	170818428	170818328	170818329	Frame_Shift_Ins	-	A	p.A53fs
KIRP	TCGA-UZ-A9PS-01	MED13	ENST00000397786.2	chr17	60032742:60032928:60033040:60033199:60033699:60033842,	60033041	60033199	60033103	60033103	Frame_Shift_Del	G	-	p.P1907fs
KIRP	TCGA-UZ-A9PS-01	PRKCA	ENST00000284384.6,ENST00000413366.3	chr17	64685068:64685165:64728805:64728943:64731606:64731780,	64728806	64728943	64728827	64728827	Frame_Shift_Del	G	-	p.A313fs
KIRP	TCGA-UZ-A9PS-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114279656	114279656	Frame_Shift_Del	T	-	p.N3294fs
KIRP	TCGA-UZ-A9PS-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147806844	147806844	Frame_Shift_Del	T	-	p.Q662fs
KIRP	TCGA-UZ-A9PS-01	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147806844	147806844	Frame_Shift_Del	T	-	p.Q662fs
KIRP	TCGA-DZ-6132-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24908604	24908604	Frame_Shift_Del	T	-	p.P741fs
KIRP	TCGA-DZ-6132-01	RPL24	ENST00000495401.1	chr3	101399939:101400059:101401614:101401751:101404661:101404733,	101401615	101401751	101401697	101401698	Frame_Shift_Ins	-	A	p.T83fs
KIRP	TCGA-DZ-6132-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645179	70645179	Frame_Shift_Del	T	-	p.I542fs
KIRP	TCGA-DZ-6132-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150027927	150027927	Frame_Shift_Del	A	-	p.L274fs
KIRP	TCGA-DW-7841-01	SUSD1	ENST00000374264.2,ENST00000374270.3	chr9	114804146:114804240:114820707:114820966:114825216:114825313,114814678:114814718:114820707:114820966:114825216:114825313,	114820708	114820966	114820886	114820886	Frame_Shift_Del	C	-	p.S644fs
KIRP	TCGA-HE-A5NF-01	ARHGEF4	ENST00000532720.1,ENST00000525839.1,ENST00000355771.3,ENST00000409303.1,ENST00000490728.1,ENST00000326016.5,ENST00000392953.3	chr2	131799387:131799517:131801024:131801156:131801871:131802115,	131801025	131801156	131801154	131801154	Frame_Shift_Del	A	-	p.K532fs
KIRP	TCGA-HE-A5NF-01	CTNNA1	ENST00000517980.1,ENST00000523912.1,ENST00000518825.1,ENST00000520158.1,ENST00000519113.1,ENST00000522227.1,ENST00000302763.7	chr5	138117611:138117718:138118865:138119061:138145726:138145778,	138118866	138119061	138118896	138118897	Frame_Shift_Del	GG	-	p.45_46del
KIRP	TCGA-HE-A5NF-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899726	133899727	Frame_Shift_Ins	-	TA	p.C703fs
KIRP	TCGA-HE-A5NF-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75516201	75516205	Frame_Shift_Del	TGAAC	-	p.52_53del
KIRP	TCGA-UZ-A9PX-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37369055	37369056	Frame_Shift_Ins	-	AAAT	p.R1915fs
KIRP	TCGA-UZ-A9PX-01	TNRC18	ENST00000328270.3,ENST00000430969.1	chr7	5352741:5353494:5354614:5354779:5355586:5355703,	5354615	5354779	5354660	5354669	Frame_Shift_Del	TGGCTCCTGG	-	p.2325_2328del
KIRP	TCGA-UZ-A9PX-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274159	80274160	Frame_Shift_Ins	-	T	p.A175fs
KIRP	TCGA-UZ-A9PX-01	DYNC1I2	ENST00000470286.1,ENST00000409773.1,ENST00000425485.1,ENST00000445378.1,ENST00000508530.1,ENST00000410079.3,ENST00000397119.3,ENST00000409453.1,ENST00000452242.1,ENST00000435234.1,ENST00000340296.4,ENST00000534253.2,ENST00000482454.1,ENST00000358002.6,ENST00000263811.4,ENST00000409317.1,ENST00000409197.1	chr2	172571899:172571953:172582127:172582223:172582428:172582456,	172582128	172582223	172582207	172582208	Frame_Shift_Ins	-	GA	p.E197fs
KIRP	TCGA-UZ-A9PX-01	WDFY3	ENST00000295888.4,ENST00000322366.6	chr4	85724442:85724620:85729486:85729570:85731039:85731260,	85729487	85729570	85729530	85729531	Frame_Shift_Ins	-	AG	p.S796fs
KIRP	TCGA-UZ-A9PX-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274162	80274162	Frame_Shift_Del	G	-	p.P174fs
KIRP	TCGA-UZ-A9PX-01	STAT5A	ENST00000588868.1,ENST00000452307.2,ENST00000590949.1,ENST00000546010.2,ENST00000468096.1,ENST00000345506.4	chr17	40461064:40461116:40461394:40461502:40462524:40462541,	40461395	40461502	40461463	40461482	Frame_Shift_Del	CTGTGTGCCCCCAGGCTCCC	-	p.728_734del
KIRP	TCGA-A4-A7UZ-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000269280.4	chr17	5421065:5421207:5424843:5425106:5433800:5434024,	5424844	5425106	5424855	5424865	Frame_Shift_Del	AGCAGTCACTT	-	p.1259_1262del
KIRP	TCGA-A4-A7UZ-01	EIF4A2	ENST00000492144.1,ENST00000426808.1,ENST00000323963.5,ENST00000443963.1,ENST00000425053.1,ENST00000440191.2,ENST00000356531.5	chr3	186504979:186505053:186505283:186505373:186505591:186505671,	186505284	186505373	186505347	186505348	Frame_Shift_Ins	-	A	p.R325fs
KIRP	TCGA-A4-A7UZ-01	EIF4A2	ENST00000429589.1	chr3	186504979:186505053:186505267:186505373:186505591:186505671,	186505268	186505373	186505347	186505348	Frame_Shift_Ins	-	A	p.R325fs
KIRP	TCGA-4A-A93X-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827997	48827998	Frame_Shift_Ins	-	T	p.S425fs
KIRP	TCGA-A4-8517-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76696864:76697020:76726418:76726651:76763552:76763676,	76726419	76726651	76726602	76726603	Frame_Shift_Ins	-	TA	p.K1043fs
KIRP	TCGA-A4-8517-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10093063:10093150:10094153:10094346:10096027:10096201,	10094154	10094346	10094307	10094307	Frame_Shift_Del	C	-	p.Y689fs
KIRP	TCGA-A4-8517-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77661360	77661360	Frame_Shift_Del	G	-	p.L678fs
KIRP	TCGA-A4-8517-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32466287:32466439:32467759:32467930:32472972:32473063,	32467760	32467930	32467853	32467868	Frame_Shift_Del	AGGTGGCAATCAGAAT	-	p.693_698del
KIRP	TCGA-A4-8517-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18853529:18853776:18856750:18856973:18858774:18858929,	18856751	18856973	18856931	18856931	Frame_Shift_Del	C	-	p.M2014X
KIRP	TCGA-A4-A6HP-01	RNPEP	ENST00000478617.1,ENST00000295640.4,ENST00000447312.1,ENST00000481780.1	chr1	201958031:201958172:201958510:201958659:201965274:201965391,	201958511	201958659	201958580	201958590	Frame_Shift_Del	TTCCAGATGTG	-	p.219_223del
KIRP	TCGA-B9-5155-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609125	179609129	Frame_Shift_Del	GTGTT	-	p.557_559del
KIRP	TCGA-B9-5155-01	PARP4	ENST00000381989.3	chr13	25005514:25005614:25008532:25009612:25015983:25016106,	25008533	25009612	25009395	25009395	Frame_Shift_Del	G	-	p.P1295fs
KIRP	TCGA-B9-5155-01	PAIP1	ENST00000436644.2,ENST00000514514.1	chr5	43547829:43548015:43555931:43556101:43556920:43557179,	43555932	43556101	43555937	43555937	Frame_Shift_Del	A	-	p.Y144fs
KIRP	TCGA-A4-A4ZT-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832057	61832061	Frame_Shift_Del	GTGGC	-	p.2860_2861del
KIRP	TCGA-A4-A4ZT-01	UBA6	ENST00000322244.5,ENST00000420827.2,ENST00000429659.3	chr4	68534268:68534392:68536187:68536310:68539414:68539495,	68536188	68536310	68536261	68536262	Frame_Shift_Ins	-	TT	p.F199_G200delinsX
KIRP	TCGA-A4-A4ZT-01	UBA6	ENST00000322244.5,ENST00000420827.2,ENST00000429659.3	chr4	68534268:68534392:68536187:68536310:68539414:68539495,	68536188	68536310	68536260	68536261	Frame_Shift_Ins	-	T	p.F199fs
KIRP	TCGA-A4-A4ZT-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832051	61832054	Frame_Shift_Del	TTGT	-	p.2862_2863del
KIRP	TCGA-A4-A4ZT-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832052	61832061	Frame_Shift_Del	TGTTAGTGGC	-	p.2860_2863del
KIRP	TCGA-A4-A4ZT-01	UBA6	ENST00000322244.5,ENST00000420827.2,ENST00000429659.3	chr4	68534268:68534392:68536187:68536310:68539414:68539495,	68536188	68536310	68536261	68536261	Frame_Shift_Del	A	-	p.F199fs
KIRP	TCGA-G7-A8LD-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437709	52437709	Frame_Shift_Del	G	-	p.S485fs
KIRP	TCGA-UZ-A9PP-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12123780	12123781	Frame_Shift_Ins	-	C	p.C1251fs
KIRP	TCGA-B1-A655-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560648	32560648	Frame_Shift_Del	A	-	p.Y258fs
KIRP	TCGA-2Z-A9JO-01	MAPRE3	ENST00000458529.1,ENST00000233121.2	chr2	27246199:27246345:27246963:27247165:27248450:27248605,	27246964	27247165	27247068	27247072	Frame_Shift_Del	CAACC	-	p.124_125del
KIRP	TCGA-2Z-A9JO-01	MAPRE3	ENST00000405074.3,ENST00000402218.1	chr2	27246199:27246345:27246963:27247120:27248450:27248605,	27246964	27247120	27247068	27247072	Frame_Shift_Del	CAACC	-	p.124_125del
KIRP	TCGA-SX-A7SN-01	HNRNPAB	ENST00000514633.1,ENST00000355836.5,ENST00000506259.1,ENST00000515193.1,ENST00000504898.1,ENST00000506339.1,ENST00000358344.3	chr5	177631815:177632047:177632842:177633011:177633732:177633867,	177632843	177633011	177632987	177632988	Frame_Shift_Ins	-	A	p.F118fs
KIRP	TCGA-A4-7286-01	MORN3	ENST00000542364.1	chr12	122097096:122097254:122107244:122107418:122110484:122110537,	122107245	122107418	122107353	122107353	Frame_Shift_Del	G	-	p.L13fs
KIRP	TCGA-Y8-A896-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000347330.5,ENST00000338641.4,ENST00000403999.3,ENST00000432151.1	chr22	30057193:30057328:30060978:30061053:30064321:30064435,	30060979	30061053	30060995	30060996	Frame_Shift_Ins	-	GG	p.L276fs
KIRP	TCGA-UZ-A9PL-01	UMPS	ENST00000462091.1,ENST00000460034.1,ENST00000536109.1,ENST00000487622.1,ENST00000232607.2,ENST00000474588.1,ENST00000467167.1,ENST00000538242.1	chr3	124456977:124457086:124458870:124459046:124460998:124461113,	124458871	124459046	124458913	124458913	Frame_Shift_Del	C	-	p.A342fs
KIRP	TCGA-UZ-A9PL-01	LRIG3	ENST00000379141.4,ENST00000433272.2,ENST00000320743.3	chr12	59281570:59281714:59282110:59282254:59282600:59282744,	59282111	59282254	59282143	59282149	Frame_Shift_Del	ATCAGGG	-	p.304_306del
KIRP	TCGA-UZ-A9PL-01	SLCO1C1	ENST00000266509.2,ENST00000545604.1,ENST00000540354.1,ENST00000381552.1	chr12	20852485:20852639:20854251:20854393:20858882:20859015,	20854252	20854393	20854365	20854365	Frame_Shift_Del	G	-	p.V81fs
KIRP	TCGA-UZ-A9PL-01	UMPS	ENST00000462091.1,ENST00000460034.1,ENST00000536109.1,ENST00000487622.1,ENST00000232607.2,ENST00000474588.1,ENST00000467167.1,ENST00000538242.1	chr3	124456977:124457086:124458870:124459046:124460998:124461113,	124458871	124459046	124458913	124458920	Frame_Shift_Del	CTCACGTG	-	p.342_344del
KIRP	TCGA-HE-A5NH-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102674963	102674964	Frame_Shift_Ins	-	A	p.V183fs
KIRP	TCGA-HE-A5NH-01	FAM86B2	ENST00000532480.1,ENST00000309608.5,ENST00000262365.4,ENST00000351291.4,ENST00000527331.1	chr8	12289590:12289671:12291560:12291623:12293756:12293852,	12291561	12291623	12291589	12291590	Frame_Shift_Ins	-	A	p.S44fs
KIRP	TCGA-UN-AAZ9-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819565	214819565	Frame_Shift_Del	C	-	p.K2217fs
KIRP	TCGA-B9-4116-01	CA6	ENST00000377436.3,ENST00000377443.2	chr1	9005945:9006024:9009321:9009501:9017195:9017344,	9009322	9009501	9009376	9009376	Frame_Shift_Del	A	-	p.Q45fs
KIRP	TCGA-B9-4116-01	MZT2A	ENST00000445782.2	chr2	132241536:132241791:132249448:132249597:132249779:132249908,132229640:132229755:132249448:132249597:132249779:132249908,	132249449	132249597	132249519	132249520	Frame_Shift_Ins	-	A	p.Q83fs
KIRP	TCGA-B9-4116-01	MZT2A	ENST00000410036.2	chr2	132241536:132241791:132249448:132249545:132250292:132250316,	132249449	132249545	132249519	132249520	Frame_Shift_Ins	-	A	p.Q83fs
KIRP	TCGA-SX-A7SP-01	MPI	ENST00000564003.1,ENST00000535694.1	chr15	75182402:75182430:75183719:75183920:75185001:75185074,	75183720	75183920	75183852	75183852	Frame_Shift_Del	A	-	p.G92fs
KIRP	TCGA-G7-A8LE-01	RACGAP1	ENST00000546786.1	chr12	50396054:50396083:50410413:50410502:50419180:50419221,50399140:50399175:50410413:50410502:50419180:50419221,50400216:50400419:50410413:50410502:50419180:50419221,50400216:50400419:50410413:50410502:50419110:50419183,50399140:50399175:50410413:50410502:50419110:50419183,	50410414	50410502	50410456	50410456	Frame_Shift_Del	G	-	p.L15fs
KIRP	TCGA-G7-A8LE-01	RACGAP1	ENST00000548824.1	chr12	50400216:50400419:50410413:50410498:50419110:50419183,50400216:50400419:50410413:50410498:50419180:50419221,50400216:50400419:50410413:50410498:50419155:50419217,	50410414	50410498	50410456	50410456	Frame_Shift_Del	G	-	p.L15fs
KIRP	TCGA-G7-A8LE-01	SLC2A13	ENST00000380858.1	chr12	40422102:40422311:40441852:40442012:40499054:40499661,	40441853	40442012	40441958	40441958	Frame_Shift_Del	A	-	p.L204fs
KIRP	TCGA-G7-A8LE-01	CTTNBP2	ENST00000446636.1,ENST00000160373.3,ENST00000445366.1,ENST00000441556.1	chr7	117351681:117351836:117358071:117358173:117359557:117359690,	117358072	117358173	117358121	117358122	Frame_Shift_Del	GG	-	p.1566_1566del
KIRP	TCGA-SX-A7SS-01	MYO1B	ENST00000339514.4,ENST00000304164.4,ENST00000451437.1,ENST00000392318.3,ENST00000418908.1,ENST00000392316.1,ENST00000471904.1	chr2	192194660:192194755:192206186:192206291:192210961:192211000,	192206187	192206291	192206229	192206230	Frame_Shift_Ins	-	A	p.G130fs
KIRP	TCGA-SX-A7SS-01	SLC23A1	ENST00000348729.3	chr5	138715644:138715765:138715896:138716078:138716253:138716296,	138715897	138716078	138716053	138716054	Frame_Shift_Ins	-	T	p.S168fs
KIRP	TCGA-SX-A7SS-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346965	29346966	Frame_Shift_Ins	-	CT	p.P293fs
KIRP	TCGA-SX-A7SS-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234239	95234240	Frame_Shift_Ins	-	AGGTCTTG	p.L410fs
KIRP	TCGA-DZ-6133-01	SCN8A	ENST00000550891.1,ENST00000355133.3,ENST00000354534.6,ENST00000545061.1	chr12	52139686:52139819:52145138:52145377:52156286:52156460,	52145139	52145377	52145329	52145329	Frame_Shift_Del	C	-	p.H774fs
KIRP	TCGA-MH-A855-01	CNTLN	ENST00000380647.3	chr9	17273730:17273864:17298187:17298350:17309055:17309250,	17298188	17298350	17298345	17298346	Frame_Shift_Ins	-	A	p.Q381fs
KIRP	TCGA-Y8-A897-01	EXTL1	ENST00000374280.3	chr1	26357622:26357755:26357950:26358057:26358886:26358976,	26357951	26358057	26358007	26358007	Frame_Shift_Del	C	-	p.Q430fs
KIRP	TCGA-Y8-A897-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47822244:47822397:47831102:47831981:47832750:47832906,	47831103	47831981	47831328	47831328	Frame_Shift_Del	G	-	p.A1780fs
KIRP	TCGA-IA-A83W-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1704144	1704148	Frame_Shift_Del	CATCT	-	p.181_182del
KIRP	TCGA-GL-A59T-01	NUMA1	ENST00000393695.3,ENST00000537930.1,ENST00000534987.1,ENST00000540843.1,ENST00000351960.6,ENST00000358965.6,ENST00000543009.1,ENST00000535947.1,ENST00000543937.1,ENST00000537217.1,ENST00000544238.1,ENST00000544129.1,ENST00000536119.1,ENST00000542977.1	chr11	71732271:71732337:71733384:71733465:71734110:71734193,	71733385	71733465	71733436	71733436	Frame_Shift_Del	G	-	p.M108X
KIRP	TCGA-GL-A59T-01	OAT	ENST00000368845.5	chr10	126097461:126097534:126100541:126100769:126107441:126107505,	126100542	126100769	126100644	126100644	Frame_Shift_Del	T	-	p.T33fs
KIRP	TCGA-GL-A59T-01	IGF2R	ENST00000356956.1	chr6	160493796:160493916:160494244:160494501:160494788:160495007,	160494245	160494501	160494272	160494272	Frame_Shift_Del	G	-	p.S1573fs
KIRP	TCGA-HE-7129-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000417477.2,ENST00000348476.3	chr14	58825849:58825934:58827618:58827760:58830887:58832018,	58827619	58827760	58827698	58827698	Frame_Shift_Del	C	-	p.S673fs
KIRP	TCGA-BQ-7061-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073973	197073974	Frame_Shift_Ins	-	A	p.I1470fs
KIRP	TCGA-BQ-7061-01	NCAPD3	ENST00000534548.2,ENST00000530396.1,ENST00000525964.2	chr11	134038363:134038497:134038811:134038949:134046201:134046281,	134038812	134038949	134038822	134038822	Frame_Shift_Del	G	-	p.Q1077fs
KIRP	TCGA-B1-A657-01	ANTXR2	ENST00000403729.2,ENST00000514959.1,ENST00000449651.1,ENST00000346652.6,ENST00000295465.4,ENST00000404191.1,ENST00000307333.7	chr4	80975434:80975506:80976303:80976372:80976513:80976621,	80976304	80976372	80976344	80976344	Frame_Shift_Del	C	-	p.S172fs
KIRP	TCGA-B1-A657-01	CHCHD3	ENST00000423635.1,ENST00000466644.1,ENST00000496427.1,ENST00000262570.5	chr7	132523158:132523229:132570421:132570505:132659928:132660046,	132570422	132570505	132570441	132570442	Frame_Shift_Ins	-	G	p.L145fs
KIRP	TCGA-B1-A657-01	SIRT4	ENST00000202967.4	chr12	120741682:120741861:120750258:120750553:120750686:120751044,	120750259	120750553	120750516	120750517	Frame_Shift_Del	AA	-	p.252_252del
KIRP	TCGA-B1-A657-01	SIRT4	ENST00000537892.1	chr12	120741682:120741861:120750386:120750553:120750686:120751044,	120750387	120750553	120750516	120750517	Frame_Shift_Del	AA	-	p.252_252del
KIRP	TCGA-B1-A657-01	PNPLA8	ENST00000476592.1	chr7	108142934:108143086:108154587:108154737:108166472:108166515,	108154588	108154737	108154603	108154603	Frame_Shift_Del	T	-	p.G398fs
KIRP	TCGA-BQ-7059-01	KLHL7	ENST00000322275.5,ENST00000339077.5	chr7	23157529:23157583:23163395:23163498:23164306:23164400,23145735:23145765:23163395:23163498:23164306:23164400,	23163396	23163498	23163475	23163476	Frame_Shift_Ins	-	T	p.H67fs
KIRP	TCGA-BQ-7059-01	DNAJC1	ENST00000376980.3	chr10	22094908:22095028:22171210:22171368:22193450:22193541,	22171211	22171368	22171214	22171214	Frame_Shift_Del	T	-	p.Q326fs
KIRP	TCGA-BQ-7059-01	MCPH1	ENST00000344683.5	chr8	6312722:6312773:6335114:6335152:6338234:6338397,	6335115	6335152	6335132	6335133	Frame_Shift_Ins	-	A	p.V651fs
KIRP	TCGA-BQ-7059-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36766486:36766685:36767153:36767297:36769396:36769749,	36767154	36767297	36767245	36767245	Frame_Shift_Del	G	-	p.R865fs
KIRP	TCGA-BQ-7059-01	OGG1	ENST00000449570.2	chr3	9798450:9798500:9800917:9800970:9807492:9807796,	9800918	9800970	9800959	9800960	Frame_Shift_Ins	-	T	p.S346fs
KIRP	TCGA-BQ-7059-01	OGG1	ENST00000302008.8	chr3	9798450:9798500:9800870:9800970:9807492:9807796,	9800871	9800970	9800959	9800960	Frame_Shift_Ins	-	T	p.S346fs
KIRP	TCGA-DW-5561-01	GAPDH	ENST00000396861.1,ENST00000492719.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646278:6646382:6646474:6646556:6646749:6646964,	6646475	6646556	6646478	6646485	Frame_Shift_Del	TGCCTCCT	-	p.149_151del
KIRP	TCGA-5P-A9JU-01	PCCB	ENST00000462637.1	chr3	135969232:135969400:135974697:135974817:135975396:135975465,135969232:135969400:135974697:135974817:135979320:135979377,	135974698	135974817	135974705	135974706	Frame_Shift_Ins	-	A	p.L64fs
KIRP	TCGA-5P-A9JU-01	ZNF77	ENST00000314531.4	chr19	2933215:2934813:2936521:2936702:2939278:2939405,	2936522	2936702	2936619	2936620	Frame_Shift_Ins	-	A	p.V72fs
KIRP	TCGA-5P-A9JU-01	UBE3B	ENST00000539599.1,ENST00000538070.1,ENST00000434735.2,ENST00000449510.2,ENST00000342494.3	chr12	109959245:109959356:109961782:109961920:109962242:109962308,	109961783	109961920	109961880	109961880	Frame_Shift_Del	C	-	p.S821fs
KIRP	TCGA-5P-A9JU-01	FAM172A	ENST00000502503.1,ENST00000509163.1,ENST00000395965.3	chr5	93159853:93159973:93217175:93217394:93300162:93300228,93159853:93159973:93217175:93217394:93294481:93294673,	93217176	93217394	93217216	93217216	Frame_Shift_Del	T	-	p.N249fs
KIRP	TCGA-5P-A9JU-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597437	52597437	Frame_Shift_Del	A	-	p.A1292fs
KIRP	TCGA-5P-A9JU-01	PBRM1	ENST00000394830.3	chr3	52595782:52595984:52597379:52597509:52598065:52598249,	52597380	52597509	52597437	52597437	Frame_Shift_Del	A	-	p.A1292fs
KIRP	TCGA-KV-A74V-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2134951:2135027:2135230:2135323:2136193:2136380,	2135231	2135323	2135239	2135240	Frame_Shift_Ins	-	T	p.S1526fs
KIRP	TCGA-BQ-5892-01	RCAN3	ENST00000436717.2	chr1	24829386:24829640:24840803:24841057:24857707:24857881,	24840804	24841057	24840967	24840967	Frame_Shift_Del	T	-	p.D35fs
KIRP	TCGA-BQ-5892-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000539828.2,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68191861:68191971:68200745:68200918:68208276:68208417,	68200746	68200918	68200904	68200904	Frame_Shift_Del	T	-	p.I587fs
KIRP	TCGA-BQ-5892-01	MTCH2	ENST00000530428.1,ENST00000302503.3	chr11	47652587:47652639:47653205:47653263:47656223:47656283,	47653206	47653263	47653227	47653227	Frame_Shift_Del	G	-	p.L136fs
KIRP	TCGA-BQ-5892-01	SAR1B	ENST00000503318.1,ENST00000439578.1,ENST00000505758.1,ENST00000502286.1,ENST00000402673.2	chr5	133948380:133948446:133956622:133956742:133959651:133959727,	133956623	133956742	133956720	133956720	Frame_Shift_Del	T	-	p.L28fs
KIRP	TCGA-B1-A47M-01	SLC25A15	ENST00000478827.1,ENST00000338625.4	chr13	41379253:41379391:41381429:41381599:41382573:41382606,	41381430	41381599	41381598	41381598	Frame_Shift_Del	A	-	p.L207X
KIRP	TCGA-B1-A47M-01	ODF2	ENST00000393533.2,ENST00000448249.3,ENST00000604420.1,ENST00000372791.3,ENST00000546203.1,ENST00000434106.3,ENST00000444119.2,ENST00000393527.3,ENST00000372814.3,ENST00000351030.3,ENST00000372807.5	chr9	131247643:131247753:131250168:131250304:131254704:131254815,	131250169	131250304	131250301	131250301	Frame_Shift_Del	G	-	p.L575fs
KIRP	TCGA-GL-7966-01	TCFL5	ENST00000335351.3,ENST00000217162.5	chr20	61488746:61488990:61490715:61490878:61491476:61491660,	61490716	61490878	61490803	61490806	Frame_Shift_Del	AGAA	-	p.302_303del
KIRP	TCGA-GL-7966-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000403435.1,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000347330.5,ENST00000338641.4,ENST00000403999.3,ENST00000432151.1	chr22	30057193:30057328:30060978:30061053:30064321:30064435,	30060979	30061053	30061052	30061052	Frame_Shift_Del	T	-	p.L295X
KIRP	TCGA-GL-7966-01	PUS3	ENST00000534158.1	chr11	125765564:125765684:125765801:125766225:125773064:125773116,	125765802	125766225	125766029	125766029	Frame_Shift_Del	T	-	p.T51fs
KIRP	TCGA-GL-A4EM-01	CLTC	ENST00000579456.1,ENST00000269122.3,ENST00000393043.1	chr17	57759678:57759789:57759989:57760154:57760267:57760375,	57759990	57760154	57760151	57760152	Frame_Shift_Del	AG	-	p.1254_1254del
KIRP	TCGA-P4-A5E8-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832228	24832229	Frame_Shift_Del	AG	-	p.1343_1343del
KIRP	TCGA-P4-A5E8-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62193423:62193536:62194170:62194373:62199135:62199242,	62194171	62194373	62194216	62194223	Frame_Shift_Del	AACCAACC	-	p.229_232del
KIRP	TCGA-P4-A5E8-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986201	36986204	Frame_Shift_Del	AAAG	-	p.973_974del
KIRP	TCGA-P4-A5E8-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62193423:62193536:62194170:62194373:62199135:62199242,	62194171	62194373	62194225	62194225	Frame_Shift_Del	C	-	p.P232fs
KIRP	TCGA-P4-A5E8-01	IGFBP6	ENST00000301464.3	chr12	53493050:53493108:53494495:53494641:53494824:53494944,53491450:53491835:53494495:53494641:53494824:53494944,	53494496	53494641	53494509	53494509	Frame_Shift_Del	T	-	p.N116fs
KIRP	TCGA-P4-A5E8-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62193423:62193536:62194170:62194373:62199135:62199242,	62194171	62194373	62194216	62194225	Frame_Shift_Del	AACCAACCTC	-	p.229_232del
KIRP	TCGA-EV-5902-01	RABGAP1	ENST00000373647.4,ENST00000456584.1	chr9	125760875:125761045:125772632:125772807:125777821:125777915,	125772633	125772807	125772734	125772738	Frame_Shift_Del	TTCAG	-	p.492_493del
KIRP	TCGA-EV-5902-01	DHX57	ENST00000452978.1	chr2	39025493:39025584:39029856:39030057:39033700:39033835,39025493:39025584:39029856:39030057:39040962:39041037,	39029857	39030057	39030017	39030017	Frame_Shift_Del	T	-	p.K1286fs
KIRP	TCGA-EV-5902-01	STMN4	ENST00000265770.7,ENST00000350889.4	chr8	27093991:27094422:27097487:27097679:27098570:27098776,	27097488	27097679	27097566	27097566	Frame_Shift_Del	T	-	p.L172fs
KIRP	TCGA-EV-5902-01	MRPL22	ENST00000522038.1	chr5	154320776:154320825:154330362:154330498:154335930:154335996,	154330363	154330498	154330411	154330411	Frame_Shift_Del	T	-	p.S36fs
KIRP	TCGA-EV-5902-01	MRPL22	ENST00000439747.3,ENST00000523037.1	chr5	154320776:154320825:154330380:154330498:154335930:154335996,	154330381	154330498	154330411	154330411	Frame_Shift_Del	T	-	p.S36fs
KIRP	TCGA-EV-5902-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30064321:30064435:30067814:30067937:30069257:30069475,	30067815	30067937	30067890	30067905	Frame_Shift_Del	AGGCTGCTGCAGATGA	-	p.358_363del
KIRP	TCGA-EV-5902-01	NF2	ENST00000403435.1	chr22	30064321:30064435:30067901:30067937:30069257:30069475,	30067902	30067937	30067890	30067905	Frame_Shift_Del	AGGCTGCTGCAGATGA	-	p.358_363del
KIRP	TCGA-B3-A6W5-01	SNRNP200	ENST00000323853.5	chr2	96949550:96949742:96950095:96950323:96950917:96951078,	96950096	96950323	96950320	96950340	Frame_Shift_Del	ATACCTGGCGGGCAGAGGAGG	-	p.1389_1390del
KIRP	TCGA-IA-A83S-01	ESRP2	ENST00000251366.3,ENST00000562724.1,ENST00000569964.1,ENST00000564465.1,ENST00000564382.1,ENST00000473183.2,ENST00000565858.1	chr16	68267718:68267785:68267896:68268010:68269536:68269611,	68267897	68268010	68267898	68267898	Frame_Shift_Del	T	-	p.K147fs
KIRP	TCGA-IA-A83S-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489924	20489925	Frame_Shift_Ins	-	C	p.L402fs
KIRP	TCGA-IA-A83S-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203246	135203246	Frame_Shift_Del	A	-	p.S1247X
KIRP	TCGA-IA-A83S-01	DNAJC6	ENST00000395325.3	chr1	65720144:65720332:65830317:65830468:65831567:65831617,65811293:65811406:65830317:65830468:65831567:65831617,65730446:65730615:65830317:65830468:65831567:65831617,	65830318	65830468	65830460	65830461	Frame_Shift_Del	TG	-	p.112_112del
KIRP	TCGA-HE-A5NL-01	ATP13A1	ENST00000357324.6,ENST00000291503.5,ENST00000497556.1	chr19	19760549:19760749:19762497:19762606:19763403:19763529,	19762498	19762606	19762514	19762515	Frame_Shift_Ins	-	TGCAGGA	p.Q773fs
KIRP	TCGA-HE-A5NL-01	TTL	ENST00000233336.6,ENST00000476615.1	chr2	113258862:113258918:113260488:113260758:113277858:113278002,	113260489	113260758	113260589	113260589	Frame_Shift_Del	A	-	p.D235fs
KIRP	TCGA-HE-A5NL-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25806162:25806374:25819759:25819900:25821429:25821562,	25819760	25819900	25819805	25819806	Frame_Shift_Ins	-	T	p.H507fs
KIRP	TCGA-HE-A5NL-01	SLC25A40	ENST00000446236.1,ENST00000429674.1,ENST00000341119.5,ENST00000496348.1	chr7	87465611:87465676:87466044:87466125:87470947:87471029,	87466045	87466125	87466048	87466048	Frame_Shift_Del	A	-	p.S301X
KIRP	TCGA-BQ-5887-01	RNMT	ENST00000383314.2,ENST00000589866.1,ENST00000592764.1	chr18	13730625:13730754:13731474:13731933:13734462:13734598,	13731475	13731933	13731629	13731630	Frame_Shift_Ins	-	T	p.A38fs
KIRP	TCGA-DW-7840-01	ADTRP	ENST00000505099.1,ENST00000414691.3,ENST00000512139.1,ENST00000229583.5	chr6	11717541:11717647:11723581:11723733:11735800:11735889,11714610:11714745:11723581:11723733:11728559:11728790,11714610:11714745:11723581:11723733:11735800:11735889,	11723582	11723733	11723657	11723657	Frame_Shift_Del	C	-	p.A213fs
KIRP	TCGA-DW-7840-01	SOBP	ENST00000317357.5,ENST00000477448.1	chr6	107824860:107824999:107827445:107827631:107854662:107854814,	107827446	107827631	107827597	107827597	Frame_Shift_Del	T	-	p.P129fs
KIRP	TCGA-2Z-A9J8-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	36984777:36986403:36995723:36995906:37000474:37000608,	36995724	36995906	36995727	36995743	Frame_Shift_Del	GTATAGATCAATCAGTG	-	p.1042_1047del
KIRP	TCGA-2Z-A9J8-01	ZFYVE9	ENST00000371591.1,ENST00000287727.3,ENST00000357206.2,ENST00000469134.1	chr1	52761566:52761649:52769492:52769597:52798439:52798590,	52769493	52769597	52769546	52769547	Frame_Shift_Ins	-	A	p.D1129fs
KIRP	TCGA-SX-A7SR-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17902206:17902305:17902408:17902528:17906523:17906625,	17902409	17902528	17902443	17902443	Frame_Shift_Del	A	-	p.L271fs
KIRP	TCGA-SX-A7SR-01	RBMS2	ENST00000262031.5,ENST00000550726.1,ENST00000552247.2,ENST00000552228.1	chr12	56965481:56965639:56974967:56975047:56975182:56975292,	56974968	56975047	56975006	56975007	Frame_Shift_Ins	-	T	p.H194fs
KIRP	TCGA-B1-5398-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000565605.1,ENST00000569240.1	chr16	58622724:58622810:58633139:58633415:58663631:58663719,	58633140	58633415	58633189	58633190	Frame_Shift_Ins	-	CCAC	p.D18fs
KIRP	TCGA-B1-5398-01	FANCM	ENST00000555484.1	chr14	45665656:45665750:45667846:45668038:45669072:45669130,	45667847	45668038	45667882	45667882	Frame_Shift_Del	T	-	p.S1917fs
KIRP	TCGA-B1-5398-01	FANCM	ENST00000267430.5,ENST00000554809.1,ENST00000542564.2,ENST00000556250.1	chr14	45665656:45665750:45667846:45668138:45669072:45669130,	45667847	45668138	45667882	45667882	Frame_Shift_Del	T	-	p.S1917fs
KIRP	TCGA-2Z-A9JK-01	BAP1	ENST00000296288.5,ENST00000471532.1,ENST00000460680.1	chr3	52440844:52440923:52441189:52441332:52441414:52441476,	52441190	52441332	52441229	52441230	Frame_Shift_Del	AG	-	p.181_181del
KIRP	TCGA-2Z-A9JK-01	SEMA6A	ENST00000343348.6,ENST00000510263.1,ENST00000506114.1	chr5	115783383:115783507:115803278:115803443:115808768:115808789,	115803279	115803443	115803312	115803312	Frame_Shift_Del	C	-	p.A621fs
KIRP	TCGA-2Z-A9JS-01	NOTCH4	ENST00000375023.3	chr6	32168607:32168783:32168893:32169277:32169852:32169923,	32168894	32169277	32168924	32168937	Frame_Shift_Del	AGGGGCTGCGTTTG	-	p.1366_1370del
KIRP	TCGA-2Z-A9JS-01	PDLIM4	ENST00000253754.3,ENST00000379018.3,ENST00000418373.1	chr5	131602156:131602238:131606607:131606786:131606995:131607029,	131606608	131606786	131606622	131606622	Frame_Shift_Del	A	-	p.T114fs
KIRP	TCGA-2Z-A9JS-01	MAP2	ENST00000475600.1	chr2	210561037:210561074:210561265:210561472:210565000:210565062,	210561266	210561472	210561373	210561373	Frame_Shift_Del	C	-	p.K1429fs
KIRP	TCGA-2Z-A9JS-01	PNKD	ENST00000273077.4,ENST00000436005.2,ENST00000258362.3	chr2	219204817:219204864:219205450:219205509:219206256:219206349,	219205451	219205509	219205495	219205496	Frame_Shift_Ins	-	G	p.C170fs
KIRP	TCGA-2Z-A9JS-01	ELN	ENST00000252034.7,ENST00000380553.4,ENST00000380576.5,ENST00000358929.4,ENST00000380562.4,ENST00000429192.1,ENST00000380584.4,ENST00000445912.1,ENST00000414324.1,ENST00000320399.6,ENST00000357036.5,ENST00000380575.4,ENST00000458204.1	chr7	73469045:73469099:73470600:73470765:73471001:73471043,	73470601	73470765	73470631	73470631	Frame_Shift_Del	T	-	p.I399fs
KIRP	TCGA-2Z-A9JS-01	ELN	ENST00000320492.7	chr7	73469045:73469099:73470600:73470687:73471001:73471043,	73470601	73470687	73470631	73470631	Frame_Shift_Del	T	-	p.I399fs
KIRP	TCGA-GL-A9DD-01	CROCC	ENST00000375541.5	chr1	17250819:17250974:17256340:17256526:17256618:17256702,	17256341	17256526	17256398	17256398	Frame_Shift_Del	C	-	p.G136fs
KIRP	TCGA-GL-A9DD-01	TSR1	ENST00000301364.5	chr17	2236850:2237010:2237765:2238190:2238553:2238688,	2237766	2238190	2238104	2238110	Frame_Shift_Del	AGCGCTT	-	p.213_215del
KIRP	TCGA-F9-A7VF-01	MID1	ENST00000380787.1	chrX	10491131:10491227:10534927:10535643:10588329:10588459,10491131:10491227:10534927:10535643:10557626:10557949,10491131:10491227:10534927:10535643:10851672:10851762,	10534928	10535643	10535072	10535072	Frame_Shift_Del	C	-	p.L173X
KIRP	TCGA-F9-A7VF-01	STAB1	ENST00000321725.6,ENST00000481626.1	chr3	52554855:52555021:52555376:52555526:52555611:52555716,	52555377	52555526	52555381	52555381	Frame_Shift_Del	C	-	p.C1971fs
KIRP	TCGA-UZ-A9PJ-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101299802	101299803	Frame_Shift_Ins	-	T	p.Y201fs
KIRP	TCGA-UZ-A9PO-01	COL4A3BP	ENST00000508809.1,ENST00000357457.4,ENST00000405807.4,ENST00000261415.7,ENST00000380494.5	chr5	74675161:74675298:74676896:74677026:74677773:74677894,	74676897	74677026	74676981	74676981	Frame_Shift_Del	A	-	p.C683fs
KIRP	TCGA-UZ-A9PO-01	SCAMP2	ENST00000268099.9,ENST00000566480.1,ENST00000569251.1,ENST00000563829.1	chr15	75137813:75137934:75140940:75141042:75142854:75143014,	75140941	75141042	75140977	75141001	Frame_Shift_Del	ATGTAGATCCCTATTTGACAAAAAA	-	p.225_233del
KIRP	TCGA-UZ-A9PO-01	SCAMP2	ENST00000569904.1	chr15	75137813:75137934:75140940:75140986:75142854:75143014,	75140941	75140986	75140977	75141001	Frame_Shift_Del	ATGTAGATCCCTATTTGACAAAAAA	-	p.225_233del
KIRP	TCGA-UZ-A9PO-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368460	37368460	Frame_Shift_Del	C	-	p.K1716fs
KIRP	TCGA-UZ-A9PO-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170401230:170401345:170402727:170403214:170411633:170411765,	170402728	170403214	170403017	170403017	Frame_Shift_Del	T	-	p.N471fs
KIRP	TCGA-UZ-A9PO-01	COL16A1	ENST00000271069.6,ENST00000373668.3,ENST00000373672.3	chr1	32149550:32149604:32149709:32149832:32150123:32150231,	32149710	32149832	32149737	32149737	Frame_Shift_Del	G	-	p.E753fs
KIRP	TCGA-UZ-A9PO-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38420741:38421398:38430041:38430251:38433334:38433384,	38430042	38430251	38430244	38430244	Frame_Shift_Del	T	-	p.S391fs
KIRP	TCGA-SX-A71S-01	RABGGTB	ENST00000471759.1,ENST00000319942.3,ENST00000535300.1,ENST00000496055.1	chr1	76257145:76257256:76257865:76257991:76259768:76259918,	76257866	76257991	76257870	76257871	Frame_Shift_Ins	-	TT	p.Y195fs
KIRP	TCGA-SX-A71S-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41243848	41243848	Frame_Shift_Del	C	-	p.V1234fs
KIRP	TCGA-SX-A71S-01	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99106096:99106213:99109204:99109330:99116970:99117090,	99109205	99109330	99109218	99109218	Frame_Shift_Del	T	-	p.V991X
KIRP	TCGA-SX-A71S-01	PREX1	ENST00000482556.1,ENST00000396220.1,ENST00000371941.3	chr20	47258944:47259027:47260946:47261035:47262388:47262595,	47260947	47261035	47261019	47261023	Frame_Shift_Del	GATTG	-	p.1176_1177del
KIRP	TCGA-SX-A71S-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26861352:26861556:26861724:26862216:26864134:26864454,	26861725	26862216	26861931	26861932	Frame_Shift_Del	CC	-	p.447_448del
KIRP	TCGA-SX-A7SQ-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000586995.1,ENST00000588877.1	chr17	67285317:67285437:67286002:67286178:67287356:67287467,	67286003	67286178	67286078	67286078	Frame_Shift_Del	A	-	p.V570fs
KIRP	TCGA-SX-A7SQ-01	C19orf44	ENST00000594035.1,ENST00000221671.3,ENST00000593380.1	chr19	16611602:16612362:16617511:16617585:16620309:16620486,16613875:16614191:16617511:16617585:16620309:16620486,	16617512	16617585	16617533	16617539	Frame_Shift_Del	CGCTTGA	-	p.366_368del
KIRP	TCGA-SX-A7SQ-01	CBS	ENST00000430013.1,ENST00000398158.1,ENST00000398168.1,ENST00000544202.1,ENST00000491776.1,ENST00000352178.5,ENST00000461686.1,ENST00000398165.3,ENST00000359624.3	chr21	44478943:44479078:44479335:44479413:44480550:44480630,	44479336	44479413	44479371	44479371	Frame_Shift_Del	A	-	p.L397X
KIRP	TCGA-SX-A7SQ-01	RPN1	ENST00000296255.3,ENST00000497289.1,ENST00000495462.1	chr3	128350963:128351000:128356641:128356948:128363761:128363826,	128356642	128356948	128356918	128356918	Frame_Shift_Del	A	-	p.A120fs
KIRP	TCGA-5P-A9K6-01	PKN3	ENST00000485301.1,ENST00000291906.4	chr9	131476884:131476943:131477076:131477144:131477450:131477514,	131477077	131477144	131477092	131477093	Frame_Shift_Ins	-	AT	p.H534fs
KIRP	TCGA-5P-A9K6-01	ECD	ENST00000453402.1,ENST00000484976.2	chr10	74916346:74916413:74920191:74920309:74927623:74927706,	74920192	74920309	74920304	74920308	Frame_Shift_Del	CACCT	-	p.70_71del
KIRP	TCGA-5P-A9K6-01	HMGCS2	ENST00000544913.2	chr1	120299895:120300061:120301740:120301905:120302486:120302612,120299895:120300061:120301740:120301905:120306794:120307249,	120301741	120301905	120301769	120301769	Frame_Shift_Del	A	-	p.K275fs
KIRP	TCGA-A4-7734-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34927198	34927198	Frame_Shift_Del	A	-	p.S1887X
KIRP	TCGA-SX-A71U-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58956922:58956958:58965500:58965678:58975272:58975427,58958861:58958993:58965500:58965678:58975272:58975427,	58965501	58965678	58965662	58965663	Frame_Shift_Ins	-	T	p.Q1437fs
KIRP	TCGA-SX-A71U-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125716	12125716	Frame_Shift_Del	G	-	p.K1896fs
KIRP	TCGA-SX-A71U-01	NUP43	ENST00000460354.2,ENST00000340413.2	chr6	150057606:150057758:150059778:150059914:150063525:150063706,	150059779	150059914	150059828	150059828	Frame_Shift_Del	T	-	p.I197fs
KIRP	TCGA-SX-A71U-01	EMC4	ENST00000558205.1	chr15	34517764:34517851:34519893:34520047:34521953:34522181,34517764:34517851:34519893:34520047:34520629:34520784,34517736:34517859:34519893:34520047:34520629:34520784,	34519894	34520047	34519983	34519983	Frame_Shift_Del	C	-	p.F97fs
KIRP	TCGA-2K-A9WE-01	PRSS21	ENST00000005995.3,ENST00000450020.3,ENST00000575199.1	chr16	2867879:2867967:2868677:2868970:2870955:2871065,	2868678	2868970	2868817	2868817	Frame_Shift_Del	A	-	p.G132fs
KIRP	TCGA-2K-A9WE-01	PRSS21	ENST00000574265.1,ENST00000455114.1,ENST00000577043.1	chr16	2867879:2867967:2868683:2868970:2870955:2871065,	2868684	2868970	2868817	2868817	Frame_Shift_Del	A	-	p.G132fs
KIRP	TCGA-2K-A9WE-01	PRSS21	ENST00000570629.1	chr16	2867801:2867967:2868759:2868970:2870955:2871065,	2868760	2868970	2868817	2868817	Frame_Shift_Del	A	-	p.G132fs
KIRP	TCGA-BQ-5884-01	DENR	ENST00000280557.6	chr12	123252034:123252151:123253328:123253468:123253580:123253613,	123253329	123253468	123253468	123253468	Frame_Shift_Del	G	-	p.E184fs
KIRP	TCGA-SX-A71W-01	HHIPL1	ENST00000357223.2	chr14	100111479:100111799:100118560:100119207:100123336:100123480,	100118561	100119207	100118913	100118913	Frame_Shift_Del	G	-	p.R203fs
KIRP	TCGA-MH-A562-01	EZH1	ENST00000592743.1,ENST00000586089.1	chr17	40879679:40879781:40880842:40880970:40882845:40882936,40879679:40879781:40880842:40880970:40897028:40897033,	40880843	40880970	40880917	40880920	Frame_Shift_Del	AGTA	-	p.14_15del
KIRP	TCGA-UZ-A9PV-01	C11orf24	ENST00000304271.6,ENST00000533310.1	chr11	68030198:68030386:68031159:68031334:68035521:68035719,	68031160	68031334	68031211	68031211	Frame_Shift_Del	A	-	p.W9X
KIRP	TCGA-UZ-A9PV-01	LGR4	ENST00000379214.4	chr11	27412640:27412712:27413993:27414065:27493664:27493861,27412640:27412712:27413993:27414065:27434335:27434407,	27413994	27414065	27413998	27413999	Frame_Shift_Ins	-	T	p.V109fs
KIRP	TCGA-UZ-A9PV-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000582467.1,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65916215:65916259:65918955:65919106:65920662:65920705,	65918956	65919106	65919081	65919082	Frame_Shift_Ins	-	G	p.W2021fs
KIRP	TCGA-UZ-A9PN-01	SLC46A1	ENST00000584729.1,ENST00000440501.1	chr17	26727724:26727783:26729255:26729339:26731633:26731839,	26729256	26729339	26729265	26729266	Frame_Shift_Del	TC	-	p.386_386del
KIRP	TCGA-2Z-A9JR-01	STIM1	ENST00000527651.1,ENST00000533977.1,ENST00000300737.4	chr11	4091255:4091433:4095731:4095909:4103413:4103451,	4095732	4095909	4095775	4095788	Frame_Shift_Del	AAGGTCCATCTGGA	-	p.278_283del
KIRP	TCGA-Y8-A8S1-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77661777	77661777	Frame_Shift_Del	T	-	p.T817fs
KIRP	TCGA-HE-7128-01	PSMD1	ENST00000308696.6,ENST00000431051.1,ENST00000409643.1,ENST00000373635.4	chr2	231941747:231941876:231943372:231943461:231944249:231944328,	231943373	231943461	231943417	231943417	Frame_Shift_Del	A	-	p.A372fs
KIRP	TCGA-HE-7128-01	DZIP3	ENST00000479138.1	chr3	108308580:108308686:108324181:108324285:108326935:108327005,108308901:108308943:108324181:108324285:108326935:108327005,	108324182	108324285	108324275	108324275	Frame_Shift_Del	T	-	p.E7fs
KIRP	TCGA-HE-7128-01	LIPH	ENST00000424591.2	chr3	185236931:185237097:185241858:185241948:185245271:185245373,185236931:185237097:185241858:185241948:185251358:185251448,	185241859	185241948	185241864	185241865	Frame_Shift_Del	AA	-	p.238_238del
KIRP	TCGA-B3-3926-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132122	51132129	Frame_Shift_Del	CTAGACTT	-	p.102_104del
KIRP	TCGA-5P-A9KC-01	SMARCB1	ENST00000407082.3,ENST00000407422.3,ENST00000344921.6,ENST00000263121.7	chr22	24158956:24159123:24167411:24167602:24175758:24175890,	24167412	24167602	24167567	24167568	Frame_Shift_Del	AC	-	p.317_317del
KIRP	TCGA-5P-A9KC-01	ELOVL6	ENST00000302274.3,ENST00000506625.1,ENST00000394607.3	chr4	110972881:110972918:110980758:110980910:111026652:111026784,	110980759	110980910	110980893	110980894	Frame_Shift_Del	CG	-	p.80_80del
KIRP	TCGA-5P-A9KC-01	ZMYND10	ENST00000443080.1,ENST00000431869.1	chr3	50381164:50381281:50382554:50382667:50382918:50383103,	50382555	50382667	50382588	50382598	Frame_Shift_Del	CTCGCCCTGGC	-	p.53_57del
KIRP	TCGA-5P-A9KC-01	ZMYND10	ENST00000360165.3,ENST00000231749.3	chr3	50381164:50381281:50382554:50382663:50382918:50383103,	50382555	50382663	50382588	50382598	Frame_Shift_Del	CTCGCCCTGGC	-	p.53_57del
KIRP	TCGA-5P-A9KC-01	LPIN1	ENST00000256720.2,ENST00000396097.1,ENST00000425416.2,ENST00000449576.2,ENST00000396099.1,ENST00000404113.2	chr2	11955213:11955366:11959609:11959724:11960536:11960640,	11959610	11959724	11959665	11959665	Frame_Shift_Del	A	-	p.I868fs
KIRP	TCGA-5P-A9KC-01	ZMYND10	ENST00000443080.1,ENST00000431869.1	chr3	50381164:50381281:50382554:50382667:50382918:50383103,	50382555	50382667	50382584	50382594	Frame_Shift_Del	TGGGCTCGCCC	-	p.55_58del
KIRP	TCGA-5P-A9KC-01	ZMYND10	ENST00000360165.3,ENST00000231749.3	chr3	50381164:50381281:50382554:50382663:50382918:50383103,	50382555	50382663	50382584	50382594	Frame_Shift_Del	TGGGCTCGCCC	-	p.55_58del
KIRP	TCGA-O9-A75Z-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14576874	14576874	Frame_Shift_Del	A	-	p.Q8fs
KIRP	TCGA-O9-A75Z-01	FRMD6	ENST00000344768.5,ENST00000395718.2	chr14	52118664:52118714:52156408:52156653:52164859:52164945,	52156409	52156653	52156560	52156561	Frame_Shift_Ins	-	A	p.N2fs
KIRP	TCGA-G7-6789-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132011	51132012	Frame_Shift_Ins	-	A	p.D141_G142delinsX
KIRP	TCGA-G7-6789-01	PTPRC	ENST00000348564.6,ENST00000352140.3,ENST00000530727.1,ENST00000367376.2,ENST00000594404.1,ENST00000529828.1,ENST00000442510.2,ENST00000367367.4	chr1	198677261:198677390:198678815:198678953:198682081:198682201,	198678816	198678953	198678927	198678927	Frame_Shift_Del	G	-	p.S382fs
KIRP	TCGA-G7-6789-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113306843:113306976:113308442:113308579:113309351:113309556,	113308443	113308579	113308552	113308559	Frame_Shift_Del	CTTTCTTC	-	p.245_247del
KIRP	TCGA-MH-A856-01	RAD23A	ENST00000586375.1	chr19	13059502:13059627:13060088:13060222:13063502:13063634,	13060089	13060222	13060221	13060221	Frame_Shift_Del	A	-	p.Q271fs
KIRP	TCGA-MH-A856-01	ARG1	ENST00000275196.5,ENST00000356962.2,ENST00000368087.3	chr6	131902358:131902518:131903760:131903855:131904199:131904304,	131903761	131903855	131903762	131903762	Frame_Shift_Del	T	-	p.I164fs
KIRP	TCGA-MH-A856-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42047342	42047343	Frame_Shift_Ins	-	T	p.C1043fs
KIRP	TCGA-MH-A856-01	DAZAP1	ENST00000589484.1	chr19	1422346:1422395:1428840:1428994:1429965:1429995,	1428841	1428994	1428952	1428953	Frame_Shift_Del	GG	-	p.219_220del
KIRP	TCGA-B9-4114-01	ARMC4	ENST00000537576.1,ENST00000480504.1,ENST00000305242.5,ENST00000434029.1,ENST00000239715.3	chr10	28250496:28250644:28257851:28257947:28260036:28260242,	28257852	28257947	28257893	28257893	Frame_Shift_Del	T	-	p.P400fs
KIRP	TCGA-SX-A7SL-01	WDR35	ENST00000281405.4,ENST00000345530.3,ENST00000414212.1	chr2	20113318:20113469:20113797:20114038:20130156:20130313,	20113798	20114038	20113904	20113904	Frame_Shift_Del	G	-	p.L1097fs
KIRP	TCGA-SX-A7SL-01	TRIM65	ENST00000591668.1,ENST00000269383.3	chr17	73887357:73887428:73887893:73887959:73888091:73888230,	73887894	73887959	73887900	73887901	Frame_Shift_Del	AG	-	p.327_327del
KIRP	TCGA-SX-A7SL-01	RPGRIP1L	ENST00000262135.4,ENST00000563746.1	chr16	53671606:53671766:53674944:53675028:53675196:53675387,	53674945	53675028	53674983	53674984	Frame_Shift_Ins	-	A	p.K974_V975delinsX
KIRP	TCGA-BQ-7053-01	TMEM30A	ENST00000370050.5,ENST00000518161.1,ENST00000230461.6	chr6	75970539:75970627:75974946:75975054:75977356:75977464,	75974947	75975054	75975041	75975042	Frame_Shift_Del	AT	-	p.120_120del
KIRP	TCGA-BQ-7045-01	MITF	ENST00000472437.1,ENST00000394355.2,ENST00000328528.6,ENST00000352241.4,ENST00000448226.2,ENST00000314557.6,ENST00000314589.5,ENST00000394351.3,ENST00000461014.1,ENST00000451708.1	chr3	69987107:69987200:69988248:69988332:69990386:69990482,	69988249	69988332	69988260	69988261	Frame_Shift_Ins	-	T	p.K198fs
KIRP	TCGA-BQ-7045-01	MITF	ENST00000478490.1	chr3	69987107:69987200:69988248:69988297:69990386:69990482,	69988249	69988297	69988260	69988261	Frame_Shift_Ins	-	T	p.K198fs
KIRP	TCGA-BQ-7045-01	HAPLN3	ENST00000562889.1,ENST00000359595.3	chr15	89421061:89421487:89422197:89422500:89424587:89424956,	89422198	89422500	89422488	89422488	Frame_Shift_Del	G	-	p.P169fs
KIRP	TCGA-MH-A55W-01	LAMTOR2	ENST00000463371.1	chr1	156025053:156025216:156027768:156027858:156028105:156028297,156025361:156025466:156027768:156027858:156028105:156028297,	156027769	156027858	156027791	156027791	Frame_Shift_Del	G	-	p.R85fs
KIRP	TCGA-MH-A55W-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380179	109380179	Frame_Shift_Del	A	-	p.S1061fs
KIRP	TCGA-MH-A55W-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000440957.2,ENST00000348417.2,ENST00000349441.2	chr3	129207099:129207240:129214288:129214450:129218744:129218911,129210983:129211037:129214288:129214450:129218744:129218911,	129214289	129214450	129214436	129214436	Frame_Shift_Del	T	-	p.M782fs
KIRP	TCGA-MH-A55W-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671659	151671659	Frame_Shift_Del	C	-	p.H711fs
KIRP	TCGA-UZ-A9Q1-01	ATP6V1C2	ENST00000272238.4,ENST00000480289.1,ENST00000381661.3	chr2	10918697:10918795:10922368:10922501:10923299:10923369,	10922369	10922501	10922432	10922436	Frame_Shift_Del	GCGTT	-	p.375_376del
KIRP	TCGA-UZ-A9Q1-01	PTH1R	ENST00000418619.1,ENST00000430002.2,ENST00000427125.2,ENST00000313049.5,ENST00000449590.1,ENST00000428220.1	chr3	46925001:46925124:46935396:46935499:46937224:46937359,	46935397	46935499	46935466	46935467	Frame_Shift_Ins	-	A	p.E49fs
KIRP	TCGA-2Z-A9J1-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195514852	195514852	Frame_Shift_Del	G	-	p.P1200fs
KIRP	TCGA-2Z-A9J1-01	P4HA3	ENST00000427714.2,ENST00000525968.1,ENST00000524388.1,ENST00000331597.4	chr11	74000123:74000175:74009256:74009406:74013413:74013637,	74009257	74009406	74009326	74009327	Frame_Shift_Ins	-	C	p.G216fs
KIRP	TCGA-2Z-A9J1-01	TMEM50B	ENST00000420455.1,ENST00000542230.2,ENST00000442441.1	chr21	34839316:34839429:34841093:34841233:34852144:34852243,	34841094	34841233	34841130	34841131	Frame_Shift_Del	TC	-	p.21_22del
KIRP	TCGA-2Z-A9J1-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195514228	195514228	Frame_Shift_Del	G	-	p.P1408fs
KIRP	TCGA-2Z-A9J1-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000389980.3	chr2	54826228:54826380:54839297:54839471:54843343:54843435,	54839298	54839471	54839382	54839392	Frame_Shift_Del	CATCTTGAGAA	-	p.128_132del
KIRP	TCGA-P4-A5E6-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300505	18300505	Frame_Shift_Del	T	-	p.Q1641fs
KIRP	TCGA-UZ-A9Q0-01	ZSWIM8	ENST00000603114.1,ENST00000398706.2,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1	chr10	75545440:75545844:75548427:75548581:75548853:75548948,	75548428	75548581	75548546	75548546	Frame_Shift_Del	T	-	p.A109fs
KIRP	TCGA-G7-6793-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123629520:123629553:123658355:123658484:123661905:123662053,	123658356	123658484	123658376	123658376	Frame_Shift_Del	C	-	p.D308fs
KIRP	TCGA-MH-A857-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329080	33329081	Frame_Shift_Del	AA	-	p.1660_1661del
KIRP	TCGA-B3-4104-01	SMPD2	ENST00000258052.3	chr6	109763412:109763502:109763745:109763828:109763954:109764087,	109763746	109763828	109763791	109763791	Frame_Shift_Del	C	-	p.H151fs
KIRP	TCGA-BQ-5877-01	PPM1F	ENST00000407142.1,ENST00000538191.1,ENST00000397495.4,ENST00000263212.5	chr22	22279941:22280035:22285519:22285663:22287762:22287951,	22285520	22285663	22285579	22285579	Frame_Shift_Del	T	-	p.I278fs
KIRP	TCGA-BQ-5877-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133898849	133898849	Frame_Shift_Del	C	-	p.T411fs
KIRP	TCGA-BQ-5877-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541245	187541245	Frame_Shift_Del	T	-	p.A2166fs
KIRP	TCGA-BQ-5877-01	EBF3	ENST00000355311.5,ENST00000368648.3	chr10	131676031:131676113:131755521:131755590:131757197:131757271,	131755522	131755590	131755589	131755589	Frame_Shift_Del	G	-	p.R163fs
KIRP	TCGA-Y8-A895-01	COG3	ENST00000349995.5	chr13	46053139:46053201:46054259:46054425:46055364:46055439,	46054260	46054425	46054274	46054274	Frame_Shift_Del	A	-	p.Y133fs
KIRP	TCGA-Y8-A895-01	SLC34A1	ENST00000324417.5	chr5	176814994:176815190:176815277:176815373:176820694:176820764,	176815278	176815373	176815315	176815316	Frame_Shift_Ins	-	TGAGTCCC	p.D293fs
KIRP	TCGA-Y8-A895-01	MIDN	ENST00000586757.1,ENST00000300952.2,ENST00000591446.2	chr19	1249888:1250528:1251560:1251648:1251837:1251900,	1251561	1251648	1251579	1251580	Frame_Shift_Ins	-	C	p.K84fs
KIRP	TCGA-Y8-A895-01	TROAP	ENST00000551567.1,ENST00000547807.1,ENST00000551245.1,ENST00000551192.1,ENST00000257909.3	chr12	49717386:49717535:49717627:49717820:49717937:49718175,49717386:49717535:49717627:49717820:49718013:49718199,49717386:49717535:49717627:49717820:49719283:49719288,	49717628	49717820	49717698	49717698	Frame_Shift_Del	C	-	p.A72fs
KIRP	TCGA-Y8-A895-01	TROAP	ENST00000546776.1	chr12	49717386:49717535:49717627:49717729:49719283:49719288,	49717628	49717729	49717698	49717698	Frame_Shift_Del	C	-	p.A72fs
KIRP	TCGA-BQ-5882-01	DAP3	ENST00000463575.1,ENST00000470830.1	chr1	155691307:155691409:155695172:155695202:155695782:155695810,	155695173	155695202	155695184	155695185	Frame_Shift_Ins	-	A	p.F94fs
KIRP	TCGA-BQ-5882-01	CCDC13	ENST00000479576.1,ENST00000310232.6,ENST00000492806.1	chr3	42788748:42788865:42793427:42793517:42794066:42794209,	42793428	42793517	42793437	42793438	Frame_Shift_Ins	-	TC	p.D198fs
KIRP	TCGA-BQ-7056-01	TARBP2	ENST00000394357.2,ENST00000549572.1,ENST00000551741.1,ENST00000549679.1,ENST00000549028.1	chr12	53895149:53895245:53895798:53895968:53896810:53896913,53895402:53895492:53895798:53895968:53896810:53896913,	53895799	53895968	53895924	53895925	Frame_Shift_Ins	-	T	p.P60fs
KIRP	TCGA-BQ-7056-01	TARBP2	ENST00000548971.1	chr12	53895149:53895245:53895843:53895968:53896810:53896913,	53895844	53895968	53895924	53895925	Frame_Shift_Ins	-	T	p.P60fs
KIRP	TCGA-A4-A57E-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000216487.7	chr14	93107582:93107674:93117926:93119420:93125505:93125814,	93117927	93119420	93117951	93117952	Frame_Shift_Ins	-	T	p.P186fs
KIRP	TCGA-A4-A57E-01	KIF1A	ENST00000320389.7,ENST00000492812.1,ENST00000498729.2,ENST00000460788.1	chr2	241657466:241657585:241658422:241658615:241659190:241659343,	241658423	241658615	241658528	241658528	Frame_Shift_Del	G	-	p.Y1704fs
KIRP	TCGA-P4-A5EA-01	MAP3K1	ENST00000399503.3	chr5	56181779:56181890:56183204:56183347:56184052:56184184,	56183205	56183347	56183244	56183245	Frame_Shift_Ins	-	TA	p.R1385fs
KIRP	TCGA-P4-A5EA-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251281	81251284	Frame_Shift_Del	CTTA	-	p.723_724del
KIRP	TCGA-P4-A5EA-01	PHTF1	ENST00000369600.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000369596.2	chr1	114254561:114254735:114255900:114256060:114269039:114269080,114254561:114254735:114255900:114256060:114267380:114267515,	114255901	114256060	114255942	114255943	Frame_Shift_Del	TT	-	p.248_248del
KIRP	TCGA-P4-A5EA-01	MTA2	ENST00000524902.1,ENST00000278823.2,ENST00000527204.1	chr11	62363929:62364004:62364108:62364297:62364787:62364885,	62364109	62364297	62364175	62364176	Frame_Shift_Del	CT	-	p.272_273del
KIRP	TCGA-P4-A5EA-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232036	71232037	Frame_Shift_Del	CA	-	p.138_139del
KIRP	TCGA-P4-A5EA-01	TTL	ENST00000233336.6,ENST00000476615.1	chr2	113258862:113258918:113260488:113260758:113277858:113278002,	113260489	113260758	113260608	113260609	Frame_Shift_Del	AT	-	p.242_242del
KIRP	TCGA-P4-A5EA-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40740554:40740725:40742210:40742311:40745340:40745535,	40742211	40742311	40742258	40742261	Frame_Shift_Del	TTAA	-	p.2109_2110del
KIRP	TCGA-B9-5156-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39587574	39587574	Frame_Shift_Del	A	-	p.M606X
KIRP	TCGA-B9-5156-01	DARS	ENST00000264161.4,ENST00000537273.1,ENST00000422708.1	chr2	136672038:136672081:136673795:136673942:136678022:136678123,	136673796	136673942	136673870	136673871	Frame_Shift_Ins	-	A	p.L344fs
KIRP	TCGA-PJ-A5Z9-01	SREBF2	ENST00000361204.4,ENST00000424354.1	chr22	42280845:42281015:42289120:42289289:42290823:42290941,	42289121	42289289	42289217	42289217	Frame_Shift_Del	T	-	p.K768fs
KIRP	TCGA-PJ-A5Z9-01	VAPB	ENST00000475243.1	chr20	56993301:56993419:57009657:57009761:57014000:57014081,	57009658	57009761	57009683	57009684	Frame_Shift_Ins	-	C	p.D79fs
KIRP	TCGA-PJ-A5Z9-01	SLC14A1	ENST00000590377.1	chr18	43314238:43314367:43316420:43316613:43319127:43319186,43314238:43314367:43316420:43316613:43328340:43328390,	43316421	43316613	43316457	43316458	Frame_Shift_Ins	-	A	p.S225fs
KIRP	TCGA-HE-A5NI-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12049221:12049400:12052611:12052747:12056212:12056375,	12052612	12052747	12052666	12052667	Frame_Shift_Del	AC	-	p.77_77del
KIRP	TCGA-HE-A5NI-01	GALNT6	ENST00000543196.2,ENST00000603641.1,ENST00000603680.1,ENST00000356317.3	chr12	51751132:51751234:51751913:51752045:51752915:51753067,	51751914	51752045	51751976	51751982	Frame_Shift_Del	ACCAGGA	-	p.478_480del
KIRP	TCGA-HE-A5NI-01	RNF34	ENST00000392464.2,ENST00000361234.5,ENST00000392465.3	chr12	121853961:121854180:121855306:121855714:121858044:121858137,	121855307	121855714	121855373	121855374	Frame_Shift_Del	AG	-	p.98_99del
KIRP	TCGA-HE-A5NI-01	BRMS1L	ENST00000548758.1	chr14	36295662:36295864:36300615:36300706:36302183:36302311,	36300616	36300706	36300676	36300676	Frame_Shift_Del	T	-	p.L68fs
KIRP	TCGA-HE-A5NI-01	C2CD3	ENST00000538625.1,ENST00000334126.7	chr11	73744874:73745323:73748522:73748743:73753098:73753205,	73748523	73748743	73748552	73748561	Frame_Shift_Del	AGGTTACTGG	-	p.1948_1951del
KIRP	TCGA-HE-A5NI-01	C2CD3	ENST00000442398.2	chr11	73744874:73745323:73748522:73748697:73753098:73753263,	73748523	73748697	73748552	73748561	Frame_Shift_Del	AGGTTACTGG	-	p.1948_1951del
KIRP	TCGA-HE-A5NI-01	GDAP1	ENST00000522568.1,ENST00000521096.1,ENST00000434412.2,ENST00000220822.7,ENST00000520797.1	chr8	75272371:75272545:75274118:75274213:75275173:75275288,	75274119	75274213	75274164	75274164	Frame_Shift_Del	A	-	p.E177fs
KIRP	TCGA-HE-A5NI-01	CLK1	ENST00000409403.2	chr2	201719338:201719418:201721404:201721534:201721613:201721708,	201721405	201721534	201721517	201721517	Frame_Shift_Del	G	-	p.L358X
KIRP	TCGA-P4-A5EB-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556150.1,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63863303:63863434:63881857:63881950:63888710:63888812,	63881858	63881950	63881922	63881922	Frame_Shift_Del	A	-	p.L162fs
KIRP	TCGA-P4-A5EB-01	HPS3	ENST00000486530.1	chr3	148847477:148847727:148857790:148858285:148858803:148858975,	148857791	148858285	148857880	148857881	Frame_Shift_Ins	-	GT	p.R103fs
KIRP	TCGA-P4-A5EB-01	MLEC	ENST00000545525.1,ENST00000228506.3	chr12	121132626:121132803:121132897:121132955:121134118:121134156,	121132898	121132955	121132908	121132908	Frame_Shift_Del	A	-	p.D201fs
KIRP	TCGA-P4-A5EB-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547875	35547875	Frame_Shift_Del	G	-	p.E452fs
KIRP	TCGA-5P-A9JY-01	RD3	ENST00000367002.4	chr1	211649863:211652669:211654461:211654771:211665109:211665373,	211654462	211654771	211654560	211654576	Frame_Shift_Del	TGTGCTGGCCAGCCAGC	-	p.61_67del
KIRP	TCGA-5P-A9JY-01	MPND	ENST00000359935.4	chr19	4355093:4355170:4357249:4357418:4357511:4357582,4354320:4354417:4357249:4357418:4357511:4357582,	4357250	4357418	4357350	4357351	Frame_Shift_Del	AG	-	p.366_366del
KIRP	TCGA-5P-A9JY-01	MPND	ENST00000597036.1	chr19	4355093:4355170:4357336:4357418:4357511:4357582,	4357337	4357418	4357350	4357351	Frame_Shift_Del	AG	-	p.366_366del
KIRP	TCGA-5P-A9JY-01	CPNE2	ENST00000535318.2,ENST00000290776.8,ENST00000537605.1,ENST00000565874.1	chr16	57144619:57144834:57147199:57147379:57149387:57149462,	57147200	57147379	57147302	57147317	Frame_Shift_Del	CTCTTTGACCAGGACA	-	p.94_99del
KIRP	TCGA-5P-A9JY-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230655839:230655967:230656581:230656781:230656868:230656942,	230656582	230656781	230656737	230656737	Frame_Shift_Del	C	-	p.F1346fs
KIRP	TCGA-5P-A9JY-01	MPND	ENST00000359935.4	chr19	4355093:4355170:4357249:4357418:4357511:4357582,4354320:4354417:4357249:4357418:4357511:4357582,	4357250	4357418	4357354	4357354	Frame_Shift_Del	G	-	p.M367fs
KIRP	TCGA-5P-A9JY-01	MPND	ENST00000597036.1	chr19	4355093:4355170:4357336:4357418:4357511:4357582,	4357337	4357418	4357354	4357354	Frame_Shift_Del	G	-	p.M367fs
KIRP	TCGA-5P-A9JY-01	MPND	ENST00000359935.4	chr19	4355093:4355170:4357249:4357418:4357511:4357582,4354320:4354417:4357249:4357418:4357511:4357582,	4357250	4357418	4357351	4357354	Frame_Shift_Del	GATG	-	p.366_367del
KIRP	TCGA-5P-A9JY-01	MPND	ENST00000597036.1	chr19	4355093:4355170:4357336:4357418:4357511:4357582,	4357337	4357418	4357351	4357354	Frame_Shift_Del	GATG	-	p.366_367del
KIRP	TCGA-5P-A9JY-01	CMBL	ENST00000510532.1	chr5	10282308:10282400:10286465:10286608:10288533:10288641,10280577:10280744:10286465:10286608:10288533:10288641,	10286466	10286608	10286542	10286543	Frame_Shift_Del	TC	-	p.130_131del
KIRP	TCGA-Q2-A5QZ-01	CIZ1	ENST00000415526.1,ENST00000325721.8	chr9	130942999:130943078:130947825:130948055:130950141:130950213,130942999:130943078:130947825:130948055:130952607:130952635,	130947826	130948055	130947865	130947865	Frame_Shift_Del	T	-	p.Q214fs
KIRP	TCGA-Q2-A5QZ-01	KIAA1324L	ENST00000425689.1,ENST00000398276.2,ENST00000444627.1,ENST00000450689.2	chr7	86574265:86574362:86577042:86577238:86594219:86594340,	86577043	86577238	86577110	86577110	Frame_Shift_Del	A	-	p.S147fs
KIRP	TCGA-Y8-A8RZ-01	GCSAM	ENST00000470085.1,ENST00000495418.1	chr3	111846863:111847075:111849291:111849360:111851938:111852013,	111849292	111849360	111849299	111849306	Frame_Shift_Del	TTCTCTGT	-	p.31_33del
KIRP	TCGA-Y8-A8RZ-01	GCSAM	ENST00000484193.1	chr3	111846863:111846908:111849291:111849366:111851938:111852013,	111849292	111849366	111849299	111849306	Frame_Shift_Del	TTCTCTGT	-	p.31_33del
KIRP	TCGA-AL-3472-01	PSAT1	ENST00000376588.3	chr9	80932591:80932720:80942966:80943104:80943896:80944370,	80942967	80943104	80942983	80942984	Frame_Shift_Ins	-	A	p.Q296fs
KIRP	TCGA-IZ-8196-01	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33200454:33200598:33200813:33201052:33208812:33209012,	33200814	33201052	33201013	33201013	Frame_Shift_Del	G	-	p.T504fs
KIRP	TCGA-IZ-8196-01	MBOAT2	ENST00000486484.1	chr2	9000824:9000894:9002719:9002852:9004299:9004364,9002400:9002452:9002719:9002852:9004299:9004364,	9002720	9002852	9002791	9002791	Frame_Shift_Del	A	-	p.W372fs
KIRP	TCGA-IZ-8196-01	TPP1	ENST00000533371.1,ENST00000299427.6	chr11	6637653:6637734:6637891:6638090:6638205:6638384,	6637892	6638090	6638089	6638089	Frame_Shift_Del	A	-	p.F230fs
KIRP	TCGA-SX-A71R-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000496323.1	chr2	54883050:54883135:54884986:54885183:54886290:54886403,	54884987	54885183	54884994	54884994	Frame_Shift_Del	G	-	p.E2018fs
KIRP	TCGA-HE-A5NK-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132105	51132106	Frame_Shift_Del	CT	-	p.109_110del
KIRP	TCGA-HE-A5NK-01	GHDC	ENST00000587427.1,ENST00000593209.1,ENST00000414034.3,ENST00000301671.8,ENST00000436923.2	chr17	40343035:40343228:40344258:40344760:40344923:40345045,	40344259	40344760	40344519	40344519	Frame_Shift_Del	A	-	p.F210fs
KIRP	TCGA-HE-A5NK-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156514180:156514264:156517864:156518035:156518139:156518276,	156517865	156518035	156517916	156517917	Frame_Shift_Del	AG	-	p.751_752del
KIRP	TCGA-HE-A5NK-01	MMD	ENST00000262065.3	chr17	53481127:53481229:53485106:53485181:53488617:53488778,	53485107	53485181	53485137	53485138	Frame_Shift_Ins	-	AG	p.Y105fs
KIRP	TCGA-IZ-8195-01	FOXK2	ENST00000473637.2,ENST00000335255.5	chr17	80541888:80542064:80543779:80544076:80544938:80545148,	80543780	80544076	80543893	80543893	Frame_Shift_Del	C	-	p.Q464fs
KIRP	TCGA-B1-A656-01	PRDX6	ENST00000340385.5,ENST00000470017.1	chr1	173450464:173450621:173454499:173454646:173455393:173455540,	173454500	173454646	173454533	173454534	Frame_Shift_Ins	-	AAAAAAA	p.E96fs
KIRP	TCGA-B1-A656-01	SLC20A2	ENST00000518660.1,ENST00000520179.1,ENST00000522401.1,ENST00000342228.3,ENST00000520262.1	chr8	42296984:42297171:42302163:42302280:42317413:42317510,	42302164	42302280	42302170	42302170	Frame_Shift_Del	T	-	p.I242fs
KIRP	TCGA-B1-A656-01	AFF4	ENST00000265343.5	chr5	132223788:132223852:132224770:132224865:132227855:132228096,	132224771	132224865	132224787	132224791	Frame_Shift_Del	GCTTT	-	p.905_906del
KIRP	TCGA-2Z-A9JG-01	CEP95	ENST00000553956.2,ENST00000577960.1,ENST00000556440.2,ENST00000553412.1	chr17	62517519:62517645:62518819:62519013:62521887:62521952,	62518820	62519013	62518864	62518864	Frame_Shift_Del	G	-	p.L253fs
KIRP	TCGA-2Z-A9J3-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167943782:167943955:167944819:167945067:167946085:167946303,	167944820	167945067	167944991	167944992	Frame_Shift_Ins	-	TA	p.D599fs
KIRP	TCGA-2Z-A9J3-01	SORCS3	ENST00000369701.3	chr10	107015459:107015559:107016576:107016682:107022088:107022249,	107016577	107016682	107016678	107016678	Frame_Shift_Del	A	-	p.F1146fs
KIRP	TCGA-2Z-A9J3-01	DCLRE1B	ENST00000369563.3	chr1	114448030:114448397:114450630:114450813:114453752:114454460,114449617:114449783:114450630:114450813:114453752:114454460,	114450631	114450813	114450642	114450643	Frame_Shift_Ins	-	A	p.Y123_T124delinsX
KIRP	TCGA-2Z-A9J3-01	RPS6KC1	ENST00000543470.1,ENST00000366959.3,ENST00000366960.3	chr1	213277795:213277911:213302869:213303232:213341200:213341316,213290658:213290752:213302869:213303232:213341200:213341316,	213302870	213303232	213302993	213302993	Frame_Shift_Del	C	-	p.S199fs
KIRP	TCGA-2Z-A9J3-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32459368:32459512:32466287:32466439:32467759:32467930,	32466288	32466439	32466289	32466289	Frame_Shift_Del	T	-	p.K779fs
KIRP	TCGA-2Z-A9J3-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094459	143094459	Frame_Shift_Del	C	-	p.D473fs
KIRP	TCGA-2Z-A9J3-01	MYH9	ENST00000216181.5	chr22	36701975:36702097:36702459:36702653:36705326:36705441,	36702460	36702653	36702564	36702570	Frame_Shift_Del	TGCGGAA	-	p.643_645del
KIRP	TCGA-2Z-A9J3-01	IGFN1	ENST00000437879.2,ENST00000451870.2,ENST00000295591.8,ENST00000335211.4	chr1	201172865:201173034:201174209:201174482:201175210:201175262,	201174210	201174482	201174369	201174369	Frame_Shift_Del	C	-	p.S359fs
KIRP	TCGA-2Z-A9J3-01	ENOSF1	ENST00000251101.7,ENST00000581475.1,ENST00000585128.2,ENST00000340116.7,ENST00000584453.1,ENST00000580982.1,ENST00000583973.1,ENST00000584646.1,ENST00000582745.1,ENST00000584259.2,ENST00000319815.6,ENST00000383578.3	chr18	675320:675402:677344:677444:677742:677836,	677345	677444	677380	677380	Frame_Shift_Del	A	-	p.D379fs
KIRP	TCGA-2Z-A9J3-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094459	143094460	Frame_Shift_Del	CT	-	p.473_473del
KIRP	TCGA-G7-6797-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151152656	151152656	Frame_Shift_Del	T	-	p.T803fs
KIRP	TCGA-MH-A561-01	CENPL	ENST00000356198.2	chr1	173769549:173769657:173772100:173772643:173776404:173776448,173769549:173769657:173772100:173772643:173775576:173775714,	173772101	173772643	173772297	173772298	Frame_Shift_Ins	-	T	p.I302fs
KIRP	TCGA-MH-A561-01	PDCD5	ENST00000590247.2,ENST00000586035.1,ENST00000221784.4,ENST00000586316.1	chr19	33075863:33075917:33077763:33077835:33078158:33078203,33076721:33076813:33077763:33077835:33078158:33078203,	33077764	33077835	33077794	33077794	Frame_Shift_Del	A	-	p.L96fs
KIRP	TCGA-MH-A561-01	PTPN3	ENST00000262539.3	chr9	112216775:112216854:112219452:112219495:112219571:112219679,112211090:112211135:112219452:112219495:112219571:112219679,	112219453	112219495	112219466	112219466	Frame_Shift_Del	C	-	p.K93fs
KIRP	TCGA-MH-A561-01	CEP350	ENST00000367607.3,ENST00000357434.2	chr1	179956377:179956421:179959641:179959756:179961196:179961356,	179959642	179959756	179959644	179959645	Frame_Shift_Del	GA	-	p.41_41del
KIRP	TCGA-MH-A561-01	GRIK2	ENST00000369138.1	chr6	102503204:102503455:102513671:102513803:102516221:102516386,	102513672	102513803	102513771	102513771	Frame_Shift_Del	T	-	p.S887fs
KIRP	TCGA-MH-A561-01	ABCA4	ENST00000370225.3	chr1	94520666:94520871:94522156:94522378:94526092:94526315,	94522157	94522378	94522320	94522320	Frame_Shift_Del	A	-	p.F740fs
KIRP	TCGA-DW-5560-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000529907.1,ENST00000265636.5,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68315534:68315672:68318588:68318654:68321612:68321688,	68318589	68318654	68318634	68318637	Frame_Shift_Del	CATC	-	p.199_200del
KIRP	TCGA-DW-5560-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123800094:123800207:123801767:123801903:123804446:123804578,	123801768	123801903	123801801	123801802	Frame_Shift_Ins	-	T	p.P968fs
KIRP	TCGA-DW-5560-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46250972:46251074:46252654:46252827:46254124:46254225,	46252655	46252827	46252817	46252817	Frame_Shift_Del	A	-	p.I82fs
KIRP	TCGA-A4-A5DU-01	DISC1	ENST00000366633.3,ENST00000366632.2,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000422590.2,ENST00000602713.1,ENST00000602822.1,ENST00000366637.3	chr1	231906580:231906816:231930987:231931042:231935853:231935956,	231930988	231931042	231931003	231931003	Frame_Shift_Del	A	-	p.I582fs
KIRP	TCGA-B9-4117-01	SCMH1	ENST00000326197.7,ENST00000372595.1,ENST00000402904.2,ENST00000361705.3,ENST00000397174.2,ENST00000397171.2,ENST00000361191.5,ENST00000372597.1,ENST00000372596.1,ENST00000337495.5	chr1	41540890:41541123:41578954:41579198:41582593:41582682,	41578955	41579198	41579112	41579113	Frame_Shift_Ins	-	G	p.P196fs
KIRP	TCGA-B9-4117-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56098886	56098887	Frame_Shift_Ins	-	C	p.P126fs
KIRP	TCGA-G7-A8LB-01	DDX11	ENST00000536265.1,ENST00000407793.2,ENST00000251758.5,ENST00000535158.1,ENST00000350437.4,ENST00000542838.1,ENST00000435753.2,ENST00000415475.2,ENST00000542129.1,ENST00000540935.1,ENST00000228264.6,ENST00000543756.1,ENST00000539049.1,ENST00000545668.1	chr12	31236900:31236995:31237516:31237603:31237902:31238002,	31237517	31237603	31237572	31237572	Frame_Shift_Del	G	-	p.R150fs
KIRP	TCGA-G7-A8LB-01	IL21R	ENST00000395755.1,ENST00000564089.1,ENST00000395754.4,ENST00000337929.3	chr16	27445667:27445770:27448808:27449008:27454282:27454437,	27448809	27449008	27448951	27448954	Frame_Shift_Del	ACAG	-	p.120_121del
KIRP	TCGA-G7-A8LB-01	CDC37L1	ENST00000381854.3	chr9	4697756:4697879:4701863:4702028:4706010:4708398,	4701864	4702028	4701924	4701925	Frame_Shift_Ins	-	T	p.V270fs
KIRP	TCGA-G7-A8LB-01	ANKRD11	ENST00000330736.5,ENST00000562816.1,ENST00000562275.1	chr16	89367173:89367370:89371613:89371752:89383340:89383483,89357420:89357591:89371613:89371752:89383340:89383483,89358135:89358185:89371613:89371752:89383340:89383483,	89371614	89371752	89371696	89371696	Frame_Shift_Del	C	-	p.K49fs
KIRP	TCGA-G7-A8LB-01	UQCRC2	ENST00000268379.4	chr16	21987496:21987564:21991867:21992021:21994408:21994646,	21991868	21992021	21991981	21991981	Frame_Shift_Del	T	-	p.L413fs
KIRP	TCGA-G7-A8LB-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693891	47693892	Frame_Shift_Ins	-	A	p.N535fs
KIRP	TCGA-G7-A8LB-01	HSD17B8	ENST00000374662.3,ENST00000469186.1	chr6	33173636:33173689:33173910:33173953:33174151:33174226,	33173911	33173953	33173952	33173953	Frame_Shift_Del	GG	-	p.231_231del
KIRP	TCGA-G7-A8LB-01	ATAD2B	ENST00000238789.5,ENST00000366438.2	chr2	24080284:24080373:24086250:24086425:24087678:24087794,	24086251	24086425	24086371	24086371	Frame_Shift_Del	T	-	p.L454X
KIRP	TCGA-MH-A560-01	HNF4A	ENST00000316673.4,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000316099.4	chr20	43048360:43048516:43052657:43052894:43056974:43057097,	43052658	43052894	43052875	43052876	Frame_Shift_Ins	-	C	p.L370fs
KIRP	TCGA-MH-A560-01	GBF1	ENST00000369983.3	chr10	104123012:104123153:104123466:104123555:104125153:104125356,	104123467	104123555	104123472	104123472	Frame_Shift_Del	A	-	p.D674fs
KIRP	TCGA-MH-A560-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439271	52439271	Frame_Shift_Del	G	-	p.P324fs
KIRP	TCGA-A4-7583-01	HDGF	ENST00000495212.1	chr1	156713954:156714140:156714799:156715165:156721134:156721288,	156714800	156715165	156715103	156715104	Frame_Shift_Ins	-	A	p.F66fs
KIRP	TCGA-5P-A9KH-01	MCTP2	ENST00000451018.3	chr15	94986147:94986189:95001365:95001475:95013561:95013671,94945128:94945248:95001365:95001475:95013561:95013671,	95001366	95001475	95001475	95001477	Frame_Shift_Del	AGT	-	p.787_787del
KIRP	TCGA-G7-7502-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4,ENST00000586588.1	chr19	10250351:10250493:10250721:10251004:10251456:10251585,	10250722	10251004	10250732	10250732	Frame_Shift_Del	A	-	p.S1266fs
KIRP	TCGA-2Z-A9JD-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47635539:47635694:47637232:47637511:47639552:47639699,	47637233	47637511	47637500	47637500	Frame_Shift_Del	A	-	p.G211fs
KIRP	TCGA-2Z-A9JD-01	SWI5	ENST00000608796.1,ENST00000320188.5,ENST00000419867.2	chr9	131038522:131038681:131038865:131039034:131046788:131046898,	131038866	131039034	131038966	131038966	Frame_Shift_Del	C	-	p.F119fs
KIRP	TCGA-2Z-A9JD-01	PRKAG2	ENST00000488258.1	chr7	151292430:151292540:151372505:151372723:151478237:151478517,	151372506	151372723	151372596	151372597	Frame_Shift_Ins	-	G	p.P198fs
KIRP	TCGA-2Z-A9JD-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000389562.2,ENST00000333577.4	chr12	132504593:132504763:132505623:132505866:132508321:132508486,	132505624	132505866	132505838	132505838	Frame_Shift_Del	C	-	p.L1554fs
KIRP	TCGA-2Z-A9JD-01	LDB3	ENST00000372056.4,ENST00000429277.2	chr10	88439838:88439914:88441192:88441560:88451652:88451822,88439838:88439914:88441192:88441560:88445434:88445457,88439838:88439914:88441192:88441560:88446825:88447029,	88441193	88441560	88441289	88441290	Frame_Shift_Del	CC	-	p.139_140del
KIRP	TCGA-2Z-A9JD-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437652	52437652	Frame_Shift_Del	G	-	p.N504fs
KIRP	TCGA-Y8-A8S0-01	NEB	ENST00000413693.1,ENST00000509223.2	chr2	152352818:152352882:152359862:152359955:152361991:152362084,	152359863	152359955	152359933	152359933	Frame_Shift_Del	C	-	p.G7957fs
KIRP	TCGA-Y8-A8S0-01	NEB	ENST00000413693.1,ENST00000509223.2	chr2	152352818:152352882:152359862:152359955:152361991:152362084,	152359863	152359955	152359933	152359934	Frame_Shift_Del	CC	-	p.7957_7957del
KIRP	TCGA-EV-5903-01	AP1G2	ENST00000556743.1,ENST00000557619.1,ENST00000556943.1,ENST00000460049.2	chr14	24035547:24035628:24036319:24036528:24036947:24036988,	24036320	24036528	24036472	24036472	Frame_Shift_Del	C	-	p.A18fs
KIRP	TCGA-EV-5903-01	MAP7	ENST00000454590.1,ENST00000438100.2,ENST00000354570.3,ENST00000544465.1,ENST00000432797.2	chr6	136687464:136687577:136693638:136693763:136698892:136699006,	136693639	136693763	136693761	136693761	Frame_Shift_Del	A	-	p.S282fs
KIRP	TCGA-EV-5903-01	VPS9D1	ENST00000561976.1,ENST00000389386.3	chr16	89775634:89775843:89776184:89776314:89776993:89777050,	89776185	89776314	89776218	89776219	Frame_Shift_Del	GA	-	p.452_452del
KIRP	TCGA-EV-5903-01	VPS9D1	ENST00000565023.1	chr16	89775634:89775843:89776184:89776317:89776993:89777050,	89776185	89776317	89776218	89776219	Frame_Shift_Del	GA	-	p.452_452del
KIRP	TCGA-AT-A5NU-01	ASAH1	ENST00000520781.1,ENST00000381733.4,ENST00000314146.10,ENST00000417108.2,ENST00000262097.6	chr8	17916343:17916400:17916849:17916973:17917080:17917212,	17916850	17916973	17916973	17916973	Frame_Shift_Del	T	-	p.L323fs
KIRP	TCGA-AT-A5NU-01	STMN4	ENST00000265770.7,ENST00000350889.4	chr8	27093991:27094422:27097487:27097679:27098570:27098776,	27097488	27097679	27097616	27097616	Frame_Shift_Del	G	-	p.Q155fs
KIRP	TCGA-2Z-A9JP-01	MAP2K3	ENST00000526076.2,ENST00000395491.2,ENST00000342679.4,ENST00000496046.1,ENST00000316920.6,ENST00000361818.5	chr17	21202189:21202238:21203856:21203970:21204185:21204229,	21203857	21203970	21203904	21203904	Frame_Shift_Del	C	-	p.G71fs
KIRP	TCGA-2Z-A9JP-01	MAP2K3	ENST00000583508.1	chr17	21202189:21202238:21203782:21203970:21204185:21204229,	21203783	21203970	21203904	21203904	Frame_Shift_Del	C	-	p.G71fs
KIRP	TCGA-5P-A9JV-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274159	80274160	Frame_Shift_Ins	-	T	p.A175fs
KIRP	TCGA-F9-A97G-01	PIK3R3	ENST00000493202.1,ENST00000262741.5,ENST00000354242.4,ENST00000540385.1,ENST00000372006.1,ENST00000340332.6,ENST00000425892.1,ENST00000420542.1,ENST00000423209.1	chr1	46531727:46531851:46532582:46532763:46543186:46543281,	46532583	46532763	46532743	46532743	Frame_Shift_Del	A	-	p.L112fs
KIRP	TCGA-B9-4115-01	BTN3A2	ENST00000524682.1	chr6	26368948:26369140:26370549:26370831:26373124:26373170,26368948:26369140:26370549:26370831:26373503:26373524,	26370550	26370831	26370805	26370805	Frame_Shift_Del	A	-	p.E230fs
KIRP	TCGA-B9-4115-01	CTBP1	ENST00000506180.1	chr4	1221986:1222131:1231970:1232125:1242703:1242764,1221986:1222131:1231970:1232125:1235112:1235251,1221986:1222131:1231970:1232125:1243436:1243719,	1231971	1232125	1232016	1232016	Frame_Shift_Del	A	-	p.V51fs
KIRP	TCGA-J7-8537-01	TSG101	ENST00000545247.2,ENST00000251968.3	chr11	18537645:18537711:18541065:18541150:18548321:18548368,	18541066	18541150	18541141	18541142	Frame_Shift_Del	TG	-	p.18_18del
KIRP	TCGA-A4-A772-01	FRMD3	ENST00000376438.1,ENST00000304195.3	chr9	85987827:85987870:86004518:86004623:86152999:86153353,	86004519	86004623	86004612	86004615	Frame_Shift_Del	TTTG	-	p.53_54del
KIRP	TCGA-GL-A59R-01	TRAF3IP2	ENST00000532708.1,ENST00000392556.4,ENST00000340026.6	chr6	111901399:111901592:111912460:111913297:111926978:111927073,111901399:111901592:111912460:111913297:111922398:111922509,	111912461	111913297	111912891	111912891	Frame_Shift_Del	A	-	p.M134fs
KIRP	TCGA-GL-A59R-01	ALG6	ENST00000603108.1,ENST00000371108.4,ENST00000263440.4	chr1	63862183:63862268:63867924:63868014:63870123:63870212,	63867925	63868014	63868011	63868011	Frame_Shift_Del	A	-	p.Y85fs
KIRP	TCGA-GL-A59R-01	RELA	ENST00000529389.1,ENST00000406246.3,ENST00000532999.1,ENST00000531484.1,ENST00000308639.9,ENST00000525693.1	chr11	65423327:65423406:65425757:65425970:65426188:65426293,	65425758	65425970	65425828	65425840	Frame_Shift_Del	GGAGACACGCACA	-	p.266_270del
KIRP	TCGA-GL-A59R-01	RAF1	ENST00000251849.4,ENST00000442415.2	chr3	12650731:12650834:12653448:12653561:12660013:12660246,	12653449	12653561	12653543	12653543	Frame_Shift_Del	T	-	p.M76fs
KIRP	TCGA-GL-A59R-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34130027	34130027	Frame_Shift_Del	A	-	p.E3949fs
KIRP	TCGA-4A-A93Y-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114860861:114860942:114864455:114864565:114873933:114874120,	114864456	114864565	114864480	114864480	Frame_Shift_Del	T	-	p.V420fs
KIRP	TCGA-4A-A93Y-01	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2,ENST00000577103.1	chr16	16297266:16297470:16302584:16302716:16306041:16306103,	16302585	16302716	16302617	16302618	Frame_Shift_Ins	-	T	p.K254fs
KIRP	TCGA-BQ-5875-01	SEPT7	ENST00000350320.6,ENST00000425198.1,ENST00000399035.3,ENST00000435235.1,ENST00000399034.2,ENST00000494488.2	chr7	35925437:35925489:35930277:35930403:35937857:35937993,	35930278	35930403	35930341	35930341	Frame_Shift_Del	A	-	p.R311fs
KIRP	TCGA-BQ-5875-01	MCTS1	ENST00000371317.5	chrX	119737834:119738102:119739261:119739414:119739933:119739991,	119739262	119739414	119739292	119739293	Frame_Shift_Ins	-	AT	p.C15fs
KIRP	TCGA-BQ-5875-01	TMEM144	ENST00000511532.1,ENST00000514558.1,ENST00000504569.1,ENST00000508243.1,ENST00000296529.6	chr4	159136342:159136465:159138472:159138572:159140461:159140542,	159138473	159138572	159138552	159138552	Frame_Shift_Del	A	-	p.L104X
KIRP	TCGA-HE-7130-01	MPRIP	ENST00000584067.1,ENST00000444976.1	chr17	17041229:17041389:17045940:17046079:17049349:17049406,	17045941	17046079	17046031	17046031	Frame_Shift_Del	C	-	p.S329fs
KIRP	TCGA-HE-7130-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248974	44248974	Frame_Shift_Del	C	-	p.G179fs
KIRP	TCGA-HE-7130-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833175	25833175	Frame_Shift_Del	T	-	p.R221fs
KIRP	TCGA-4A-A93W-01	HNRNPA1	ENST00000547870.1	chr12	54674563:54674606:54675169:54675725:54675873:54675922,	54675170	54675725	54675281	54675282	Frame_Shift_Del	TG	-	p.42_43del
KIRP	TCGA-4A-A93W-01	HNRNPA1	ENST00000551702.1	chr12	54674563:54674606:54675169:54675286:54675578:54675725,54674563:54674606:54675169:54675286:54675873:54675922,	54675170	54675286	54675281	54675282	Frame_Shift_Del	TG	-	p.42_43del
KIRP	TCGA-4A-A93W-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2	chr2	171300476:171300556:171319877:171319955:171323015:171323221,	171319878	171319955	171319897	171319898	Frame_Shift_Ins	-	A	p.I917fs
KIRP	TCGA-4A-A93W-01	PEX5L	ENST00000476138.1,ENST00000467460.1,ENST00000464614.1,ENST00000463761.1	chr3	179605460:179605572:179615929:179616034:179754366:179754558,179605460:179605572:179615929:179616034:179689381:179689448,	179615930	179616034	179615950	179615950	Frame_Shift_Del	G	-	p.L60fs
KIRP	TCGA-4A-A93W-01	ZDHHC7	ENST00000344861.5,ENST00000313732.4,ENST00000564466.1,ENST00000566909.1	chr16	85011529:85011611:85012794:85012891:85015475:85015600,	85012795	85012891	85012877	85012877	Frame_Shift_Del	C	-	p.C189X
KIRP	TCGA-4A-A93W-01	MAP3K6	ENST00000472410.1,ENST00000493901.1,ENST00000357582.2,ENST00000374040.3	chr1	27689131:27689244:27689341:27689512:27689932:27690039,	27689342	27689512	27689486	27689486	Frame_Shift_Del	T	-	p.K333fs
KIRP	TCGA-SX-A7SM-01	POLR2D	ENST00000409955.1	chr2	128608163:128608259:128610498:128610679:128615339:128615523,128605414:128605759:128610498:128610679:128615601:128615691,	128610499	128610679	128610641	128610642	Frame_Shift_Ins	-	A	p.H38fs
KIRP	TCGA-SX-A7SM-01	PHF20L1	ENST00000220847.7,ENST00000460236.1,ENST00000395390.2,ENST00000395386.2	chr8	133849956:133850056:133851631:133851827:133854759:133855120,	133851632	133851827	133851799	133851799	Frame_Shift_Del	G	-	p.H786fs
KIRP	TCGA-B9-A8YI-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46322508	46322509	Frame_Shift_Ins	-	A	p.N326_T327delinsX
KIRP	TCGA-B9-A8YI-01	FKBP5	ENST00000539068.1,ENST00000357266.4,ENST00000536438.1,ENST00000542713.1	chr6	35587908:35588051:35604790:35604935:35610496:35610620,	35604791	35604935	35604801	35604826	Frame_Shift_Del	ACTAAAGACAAATGGTTCATTTCTAT	-	p.72_81del
KIRP	TCGA-B9-A8YI-01	SYTL2	ENST00000525423.1,ENST00000525702.1,ENST00000359152.5,ENST00000389958.3,ENST00000389959.4,ENST00000527523.1,ENST00000354566.3,ENST00000528231.1,ENST00000316356.4,ENST00000529581.1,ENST00000524452.1,ENST00000389960.4,ENST00000532995.1,ENST00000530351.1,ENST00000533892.1	chr11	85411557:85411636:85415900:85416071:85418471:85418574,	85415901	85416071	85416053	85416053	Frame_Shift_Del	T	-	p.I1046fs
KIRP	TCGA-B9-A8YI-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220315144:220315290:220316285:220316476:220318850:220318995,	220316286	220316476	220316411	220316411	Frame_Shift_Del	A	-	p.G895fs
KIRP	TCGA-B9-A8YI-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225346608:225346795:225360548:225360683:225362469:225362536,	225360549	225360683	225360561	225360561	Frame_Shift_Del	T	-	p.Y617fs
KIRP	TCGA-B9-A8YI-01	B4GALNT2	ENST00000300404.2,ENST00000504681.1,ENST00000393354.2	chr17	47218608:47218809:47219396:47219534:47230161:47230268,	47219397	47219534	47219412	47219413	Frame_Shift_Del	TC	-	p.137_137del
KIRP	TCGA-B9-A8YI-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291525	140291525	Frame_Shift_Del	A	-	p.P638fs
KIRP	TCGA-B9-A8YI-01	UGT3A2	ENST00000513300.1,ENST00000282507.3	chr5	36039761:36039810:36048990:36049522:36051971:36052086,	36048991	36049522	36049438	36049439	Frame_Shift_Del	AT	-	p.132_133del
KIRP	TCGA-DZ-6135-01	SPRED2	ENST00000452315.1,ENST00000356388.4,ENST00000443619.2	chr2	65559120:65559185:65561738:65561907:65571852:65571920,	65561739	65561907	65561771	65561771	Frame_Shift_Del	C	-	p.G114fs
KIRP	TCGA-DZ-6135-01	NFE2L3	ENST00000056233.3	chr7	26217622:26217742:26223320:26223404:26224152:26226745,	26223321	26223404	26223344	26223347	Frame_Shift_Del	TTCT	-	p.258_259del
KIRP	TCGA-PJ-A5Z8-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954348	62954349	Frame_Shift_Ins	-	T	p.L1163fs
KIRP	TCGA-PJ-A5Z8-01	LAMB1	ENST00000476039.1,ENST00000393561.1,ENST00000222399.6	chr7	107591670:107591767:107592453:107592668:107593974:107594094,	107592454	107592668	107592551	107592555	Frame_Shift_Del	TCACA	-	p.1065_1066del
KIRP	TCGA-PJ-A5Z8-01	KDM1B	ENST00000388870.2,ENST00000297792.5,ENST00000397244.1,ENST00000546309.2,ENST00000449850.1	chr6	18215237:18215360:18217963:18218116:18222139:18222274,	18217964	18218116	18218101	18218101	Frame_Shift_Del	C	-	p.V558fs
KIRP	TCGA-PJ-A5Z8-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2,ENST00000451813.2	chr20	33600810:33600869:33603810:33603942:33608992:33609135,	33603811	33603942	33603843	33603844	Frame_Shift_Ins	-	AA	p.H440fs
KIRP	TCGA-BQ-5885-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222347159:222347410:222365736:222365892:222428450:222429114,	222365737	222365892	222365873	222365873	Frame_Shift_Del	G	-	p.K282fs
KIRP	TCGA-BQ-5885-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000542921.1	chr10	64958272:64958487:64960235:64960437:64966354:64967485,	64960236	64960437	64960365	64960365	Frame_Shift_Del	A	-	p.L1716fs
KIRP	TCGA-BQ-5885-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540288	187540291	Frame_Shift_Del	TCCA	-	p.2484_2485del
KIRP	TCGA-IA-A40Y-01	IFT74	ENST00000429045.2,ENST00000380062.5,ENST00000518614.1	chr9	26956476:26956514:26961946:26962085:26978125:26978261,	26961947	26962085	26962063	26962075	Frame_Shift_Del	GAAATATTCGAGT	-	p.33_37del
KIRP	TCGA-UZ-A9PU-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1,ENST00000493977.1	chr1	228403389:228403530:228404121:228404403:228404713:228404989,	228404122	228404403	228404296	228404297	Frame_Shift_Ins	-	A	p.S757fs
KIRP	TCGA-UZ-A9PU-01	NAA50	ENST00000493454.1,ENST00000493900.1,ENST00000481432.1,ENST00000497525.1,ENST00000240922.3	chr3	113440502:113440784:113441752:113441819:113442268:113442388,	113441753	113441819	113441795	113441795	Frame_Shift_Del	A	-	p.L97fs
KIRP	TCGA-UZ-A9PU-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47890940:47891044:47891119:47891259:47891356:47891677,	47891120	47891259	47891247	47891253	Frame_Shift_Del	GTGCACA	-	p.1106_1108del
KIRP	TCGA-BQ-7058-01	CDH17	ENST00000027335.3,ENST00000450165.2,ENST00000441892.2	chr8	95143103:95143220:95158155:95158395:95160971:95161102,	95158156	95158395	95158391	95158391	Frame_Shift_Del	C	-	p.S645fs
KIRP	TCGA-B9-A44B-01	FUT10	ENST00000327671.5,ENST00000524021.1,ENST00000518672.1	chr8	33230161:33230322:33246480:33247316:33310733:33311028,	33246481	33247316	33246682	33246683	Frame_Shift_Ins	-	A	p.I337fs
KIRP	TCGA-B9-A44B-01	KCNH3	ENST00000257981.6,ENST00000548675.1	chr12	49950152:49950259:49950965:49951042:49951136:49951420,	49950966	49951042	49951017	49951018	Frame_Shift_Del	AC	-	p.876_876del
KIRP	TCGA-B9-A44B-01	EPS15L1	ENST00000602022.1,ENST00000597559.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000535753.2	chr19	16547747:16547810:16548580:16548676:16551672:16551720,	16548581	16548676	16548668	16548669	Frame_Shift_Del	AT	-	p.74_75del
KIRP	TCGA-B9-A44B-01	RCAN3	ENST00000436717.2	chr1	24829386:24829640:24840803:24841057:24857707:24857881,	24840804	24841057	24840954	24840954	Frame_Shift_Del	A	-	p.E31fs
KIRP	TCGA-B9-A44B-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579041	82579041	Frame_Shift_Del	T	-	p.V3622fs
KIRP	TCGA-B9-A44B-01	KLC4	ENST00000347162.5,ENST00000453940.2,ENST00000479388.1,ENST00000394058.1,ENST00000259708.3,ENST00000467906.1,ENST00000394056.2	chr6	43040960:43041076:43041639:43041703:43042359:43042646,	43041640	43041703	43041642	43041643	Frame_Shift_Ins	-	CAACACGA	p.S601fs
KIRP	TCGA-B9-A44B-01	DSP	ENST00000418664.2,ENST00000506617.1,ENST00000379802.3	chr6	7559518:7559633:7562884:7563013:7563968:7564019,	7562885	7563013	7562996	7562996	Frame_Shift_Del	A	-	p.D236fs
KIRP	TCGA-GL-6846-01	FAM20A	ENST00000592554.1,ENST00000590074.1,ENST00000226094.5,ENST00000592847.1	chr17	66538125:66538306:66538834:66538950:66539769:66539810,	66538835	66538950	66538845	66538846	Frame_Shift_Del	AA	-	p.306_307del
KIRP	TCGA-HE-A5NJ-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48609935:48609971:48610103:48610172:48610294:48610375,	48610104	48610172	48610131	48610131	Frame_Shift_Del	T	-	p.P2292fs
KIRP	TCGA-DW-7836-01	ALS2	ENST00000439495.1,ENST00000482891.1,ENST00000264276.6,ENST00000457679.2	chr2	202603392:202603458:202606396:202606577:202608980:202609111,	202606397	202606577	202606404	202606404	Frame_Shift_Del	A	-	p.Y782fs
KIRP	TCGA-SX-A71V-01	APLF	ENST00000445692.1,ENST00000529851.1,ENST00000303795.4	chr2	68729862:68730035:68740211:68740359:68740679:68740812,	68740212	68740359	68740321	68740322	Frame_Shift_Ins	-	A	p.E151fs
KIRP	TCGA-SX-A71V-01	USP14	ENST00000261601.7,ENST00000578942.1,ENST00000400266.3,ENST00000383589.2,ENST00000582707.1	chr18	180235:180339:192841:192900:196636:196767,	192842	192900	192871	192871	Frame_Shift_Del	A	-	p.E145fs
KIRP	TCGA-P4-A5E7-01	PIK3R1	ENST00000320694.8	chr5	67586509:67586662:67588086:67588189:67588928:67589027,67584522:67584579:67588086:67588189:67588928:67589027,	67588087	67588189	67588157	67588158	Frame_Shift_Ins	-	G	p.Q329fs
KIRP	TCGA-A4-8630-01	SMG5	ENST00000361813.5	chr1	156220648:156220787:156221193:156221268:156222204:156222295,	156221194	156221268	156221203	156221203	Frame_Shift_Del	G	-	p.A940fs
KIRP	TCGA-A4-8630-01	SUPT16H	ENST00000216297.2,ENST00000557394.1	chr14	21819637:21820977:21821646:21821724:21821861:21821991,	21821647	21821724	21821646	21821648	Frame_Shift_Del	CCT	-	p.1000_1000del
KIRP	TCGA-2Z-A9JN-01	DNAJA3	ENST00000431375.2,ENST00000576911.1,ENST00000262375.6,ENST00000355296.4	chr16	4496886:4497015:4498733:4498849:4500400:4500498,	4498734	4498849	4498749	4498752	Frame_Shift_Del	CAGA	-	p.380_381del
KIRP	TCGA-2Z-A9JT-01	HAO2	ENST00000325945.3,ENST00000361035.4	chr1	119934732:119934891:119935240:119935310:119936407:119936737,	119935241	119935310	119935262	119935263	Frame_Shift_Del	GT	-	p.317_318del
KIRP	TCGA-2Z-A9JT-01	ATP6V1C1	ENST00000395862.3,ENST00000521671.1,ENST00000518738.1,ENST00000518857.1,ENST00000521514.1	chr8	104066111:104066210:104068095:104068164:104075182:104075275,	104068096	104068164	104068108	104068109	Frame_Shift_Del	CG	-	p.195_195del
KIRP	TCGA-A4-7287-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730588	37730589	Frame_Shift_Ins	-	G	p.S578fs
KIRP	TCGA-A4-8515-01	PUS3	ENST00000534158.1	chr11	125765564:125765684:125765801:125766225:125773064:125773116,	125765802	125766225	125765906	125765922	Frame_Shift_Del	TCTCTTCAATGGTATTA	-	p.87_92del
KIRP	TCGA-A4-8515-01	TRIM37	ENST00000585287.1	chr17	57076741:57076820:57078958:57079102:57089688:57089768,	57078959	57079102	57078973	57078974	Frame_Shift_Del	TG	-	p.933_933del
KIRP	TCGA-A4-8515-01	TRIM37	ENST00000262294.7,ENST00000393065.2,ENST00000393066.3	chr17	57076741:57076820:57078958:57079075:57089688:57089768,	57078959	57079075	57078973	57078974	Frame_Shift_Del	TG	-	p.933_933del
KIRP	TCGA-A4-8515-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000564155.1,ENST00000393512.3	chr16	71766287:71767062:71768511:71768610:71772844:71773005,	71768512	71768610	71768532	71768533	Frame_Shift_Ins	-	A	p.K786_V787delinsX
KIRP	TCGA-A4-8515-01	TRIM14	ENST00000478401.1,ENST00000342043.3,ENST00000341469.2,ENST00000375098.3	chr9	100857148:100857311:100862212:100862446:100872170:100872266,	100862213	100862446	100862406	100862406	Frame_Shift_Del	A	-	p.F115fs
KIRP	TCGA-2Z-A9J5-01	NFATC3	ENST00000379165.4,ENST00000575270.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4	chr16	68119560:68119687:68155889:68157024:68160350:68160513,	68155890	68157024	68156669	68156669	Frame_Shift_Del	C	-	p.V294fs
KIRP	TCGA-2Z-A9J5-01	GPATCH2L	ENST00000556675.1	chr14	76647157:76647192:76662220:76662315:76668033:76668350,76647157:76647192:76662220:76662315:76696150:76696296,	76662221	76662315	76662242	76662242	Frame_Shift_Del	A	-	p.G405fs
KIRP	TCGA-2Z-A9J5-01	CLEC7A	ENST00000534609.1	chr12	10277895:10278047:10279169:10280444:10282578:10282681,	10279170	10280444	10279210	10279211	Frame_Shift_Ins	-	A	p.L100fs
KIRP	TCGA-2Z-A9J5-01	CLEC7A	ENST00000529761.1,ENST00000304084.8,ENST00000531192.1,ENST00000533022.1	chr12	10277895:10278047:10279169:10279307:10280345:10280444,	10279170	10279307	10279210	10279211	Frame_Shift_Ins	-	A	p.L100fs
KIRP	TCGA-AL-3473-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437889	52437889	Frame_Shift_Del	C	-	p.K425fs
KIRP	TCGA-AL-3473-01	VHL	ENST00000477538.1	chr3	10184446:10184705:10188197:10188320:10191470:10191829,	10188198	10188320	10188203	10188204	Frame_Shift_Ins	-	T	p.L116fs
KIRP	TCGA-AL-3473-01	PHB	ENST00000504124.1,ENST00000300408.3,ENST00000512041.2,ENST00000508009.1,ENST00000446735.1,ENST00000419140.2	chr17	47484122:47484216:47486403:47486520:47486692:47486835,	47486404	47486520	47486482	47486483	Frame_Shift_Del	CT	-	p.144_145del
KIRP	TCGA-GL-8500-01	TTC3	ENST00000428693.1	chr21	38563634:38563725:38567975:38568337:38569870:38569997,	38567976	38568337	38568034	38568035	Frame_Shift_Ins	-	T	p.S1759fs
KIRP	TCGA-GL-8500-01	HSPA9	ENST00000297185.3,ENST00000507097.1,ENST00000504902.1	chr5	137903337:137903411:137904613:137904738:137906648:137906830,	137904614	137904738	137904733	137904733	Frame_Shift_Del	T	-	p.N139fs
KIRP	TCGA-GL-8500-01	DLGAP5	ENST00000247191.2	chr14	55650323:55650471:55655659:55655898:55658180:55658262,	55655660	55655898	55655750	55655751	Frame_Shift_Ins	-	AT	p.V50fs
KIRP	TCGA-GL-8500-01	MOCS2	ENST00000510818.2	chr5	52396282:52396364:52397188:52397339:52397926:52398054,52396240:52396364:52397188:52397339:52402906:52403007,52396240:52396317:52397188:52397339:52397926:52398054,	52397189	52397339	52397195	52397196	Frame_Shift_Ins	-	T	p.R124fs
KIRP	TCGA-GL-8500-01	NEIL2	ENST00000436750.3,ENST00000284503.6,ENST00000455213.2	chr8	11627218:11627300:11637106:11637459:11640711:11640908,11629019:11629094:11637106:11637459:11640711:11640908,	11637107	11637459	11637150	11637150	Frame_Shift_Del	A	-	p.E61fs
KIRP	TCGA-2Z-A9JE-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073205	46073206	Frame_Shift_Ins	-	A	p.E208fs
KIRP	TCGA-2Z-A9JE-01	CELF1	ENST00000532048.1,ENST00000310513.5,ENST00000358597.3,ENST00000395290.2	chr11	47498397:47498511:47498848:47498977:47500428:47500492,47498397:47498508:47498848:47498977:47500428:47500492,	47498849	47498977	47498949	47498950	Frame_Shift_Ins	-	A	p.L290fs
KIRP	TCGA-2Z-A9JE-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699093	30699114	Frame_Shift_Del	CCCTCATGGACTTTATTCTTTG	-	p.316_323del
KIRP	TCGA-2Z-A9JE-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12066594:12066750:12067109:12067306:12069648:12069783,	12067110	12067306	12067259	12067260	Frame_Shift_Del	GC	-	p.674_674del
KIRP	TCGA-2Z-A9JE-01	CMTM3	ENST00000424011.2,ENST00000460097.1,ENST00000562707.1,ENST00000565003.1,ENST00000568477.1,ENST00000566121.1,ENST00000567572.1,ENST00000361909.4	chr16	66642272:66642367:66643337:66643433:66643785:66643906,	66643338	66643433	66643431	66643431	Frame_Shift_Del	G	-	p.A132fs
KIRP	TCGA-2Z-A9JE-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12066594:12066750:12067109:12067306:12069648:12069783,	12067110	12067306	12067259	12067262	Frame_Shift_Del	GCTT	-	p.674_675del
KIRP	TCGA-Y8-A8RY-01	PHF3	ENST00000481385.2,ENST00000515594.1,ENST00000509876.1,ENST00000393387.1,ENST00000506783.1,ENST00000262043.3	chr6	64401626:64401933:64404470:64404654:64408112:64408135,	64404471	64404654	64404652	64404653	Frame_Shift_Ins	-	AGGT	p.P893fs
KIRP	TCGA-2Z-A9JM-01	CD109	ENST00000422508.2,ENST00000437994.2,ENST00000287097.5	chr6	74498190:74498335:74502348:74502525:74512942:74513024,	74502349	74502525	74502420	74502421	Frame_Shift_Ins	-	AC	p.N925fs
KIRP	TCGA-2Z-A9JM-01	LPO	ENST00000262290.4,ENST00000580890.1,ENST00000543544.1,ENST00000421678.2,ENST00000582328.1	chr17	56329650:56329867:56332171:56332332:56342082:56342335,	56332172	56332332	56332255	56332255	Frame_Shift_Del	C	-	p.E396fs
KIRP	TCGA-2Z-A9JM-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1272664	1272668	Frame_Shift_Del	AGCAC	-	p.4851_4853del
KIRP	TCGA-G7-A4TM-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876672	27876673	Frame_Shift_Del	GT	-	p.652_652del
KIRP	TCGA-P4-AAVL-01	USP15	ENST00000280377.5,ENST00000393654.3,ENST00000353364.3	chr12	62775270:62775444:62777620:62777779:62777858:62778083,	62777621	62777779	62777661	62777667	Frame_Shift_Del	AGCAGCA	-	p.377_379del
KIRP	TCGA-P4-AAVL-01	CYP2J2	ENST00000371204.3	chr1	60366636:60366775:60370542:60370730:60373457:60373592,	60370543	60370730	60370654	60370654	Frame_Shift_Del	G	-	p.Y361fs
KIRP	TCGA-P4-AAVL-01	CHP1	ENST00000560965.1,ENST00000560633.1,ENST00000334660.5,ENST00000560411.1,ENST00000560397.1	chr15	41549107:41549188:41554953:41555081:41562754:41562816,	41554954	41555081	41555021	41555022	Frame_Shift_Ins	-	A	p.E97fs
KIRP	TCGA-P4-AAVL-01	TULP4	ENST00000367097.3,ENST00000367094.2	chr6	158873165:158873300:158882594:158882761:158900782:158901007,	158882595	158882761	158882608	158882629	Frame_Shift_Del	GTGGTGCACACAGGGGGACTTG	-	p.291_298del
KIRP	TCGA-IA-A40U-01	MAP4K1	ENST00000589130.1,ENST00000586296.1,ENST00000396857.2,ENST00000591517.1	chr19	39100548:39100665:39101690:39101772:39101882:39101945,	39101691	39101772	39101749	39101755	Frame_Shift_Del	ATGAAGT	-	p.249_251del
KIRP	TCGA-IA-A40U-01	PRKCI	ENST00000483697.2,ENST00000476635.1,ENST00000485837.1,ENST00000295797.4	chr3	170011170:170011296:170013698:170013778:170015091:170015116,	170013699	170013778	170013708	170013708	Frame_Shift_Del	A	-	p.E476fs
KIRP	TCGA-AL-3466-01	EPG5	ENST00000587974.1,ENST00000282041.5	chr18	43510641:43510796:43514774:43514932:43519565:43519721,	43514775	43514932	43514887	43514888	Frame_Shift_Ins	-	A	p.L715fs
KIRP	TCGA-DW-7963-01	F12	ENST00000253496.3	chr5	176832735:176832806:176832962:176833062:176836046:176836104,	176832963	176833062	176833055	176833058	Frame_Shift_Del	AGTG	-	p.41_42del
KIRP	TCGA-BQ-7044-01	ITPKA	ENST00000260386.5,ENST00000462816.1	chr15	41794194:41794399:41794599:41794701:41794985:41795057,	41794600	41794701	41794669	41794670	Frame_Shift_Ins	-	A	p.E360fs
KIRP	TCGA-A4-8312-01	BICD1	ENST00000281474.5	chr12	32490432:32490640:32491719:32491913:32520603:32520679,32490432:32490750:32491719:32491913:32520603:32520679,	32491720	32491913	32491723	32491724	Frame_Shift_Del	AT	-	p.858_858del
KIRP	TCGA-IZ-A6M9-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76393528:76393671:76395312:76395745:76397700:76398009,	76395313	76395745	76395479	76395497	Frame_Shift_Del	AAAGAAGATTCTACCACTT	-	p.558_564del
KIRP	TCGA-IZ-A6M9-01	RFX8	ENST00000481179.1,ENST00000376826.2,ENST00000428343.1	chr2	102013865:102014186:102018897:102019214:102022404:102022519,	102018898	102019214	102018936	102018936	Frame_Shift_Del	T	-	p.I403fs
KIRP	TCGA-IZ-A6M9-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58590765:58590897:58592376:58592578:58594115:58594266,	58592377	58592578	58592566	58592570	Frame_Shift_Del	CAAGA	-	p.714_715del
KIRP	TCGA-IZ-A6M9-01	RFX8	ENST00000481179.1,ENST00000376826.2,ENST00000428343.1	chr2	102013865:102014186:102018897:102019214:102022404:102022519,	102018898	102019214	102018936	102018937	Frame_Shift_Del	TC	-	p.403_403del
KIRP	TCGA-A4-A5Y0-01	ULK4	ENST00000301831.4	chr3	41759219:41759353:41795852:41795980:41831152:41831335,	41795853	41795980	41795965	41795965	Frame_Shift_Del	T	-	p.I737fs
KIRP	TCGA-A4-A5Y0-01	MTSS1	ENST00000519168.1,ENST00000395508.2	chr8	125568501:125568595:125569921:125570116:125575022:125575230,125568472:125568646:125569921:125570116:125575022:125575230,125568472:125568646:125569921:125570116:125570953:125571073,	125569922	125570116	125570101	125570101	Frame_Shift_Del	A	-	p.S351fs
KIRP	TCGA-A4-A5Y0-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740357	62740358	Frame_Shift_Del	AA	-	p.140_140del
KIRP	TCGA-A4-A5Y0-01	ADCY9	ENST00000571467.1	chr16	4039089:4039097:4042146:4042364:4043406:4043511,4039089:4039097:4042146:4042364:4043349:4043511,	4042147	4042364	4042307	4042307	Frame_Shift_Del	C	-	p.E683fs
KIRP	TCGA-AL-7173-01	LARS	ENST00000511505.1,ENST00000545646.1,ENST00000394434.2,ENST00000503654.1	chr5	145551472:145551553:145552249:145552337:145557109:145557228,	145552250	145552337	145552256	145552256	Frame_Shift_Del	T	-	p.C70fs
KIRP	TCGA-A4-7584-01	ABCB9	ENST00000542678.1,ENST00000540971.1,ENST00000442833.2,ENST00000392439.3,ENST00000344275.7,ENST00000542448.1,ENST00000538895.1,ENST00000442028.2,ENST00000280560.8	chr12	123424753:123424831:123428937:123429066:123430571:123430769,123425492:123425542:123428937:123429066:123430571:123430767,	123428938	123429066	123429030	123429030	Frame_Shift_Del	A	-	p.Y430fs
KIRP	TCGA-A4-7584-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44833910:44833960:44870205:44870264:44879854:44879975,	44870206	44870264	44870257	44870257	Frame_Shift_Del	T	-	p.A145fs
KIRP	TCGA-A4-7584-01	RMDN3	ENST00000260385.6,ENST00000338376.3,ENST00000560905.1,ENST00000558777.1	chr15	41036291:41036347:41037174:41037457:41043623:41043767,	41037175	41037457	41037304	41037305	Frame_Shift_Ins	-	GCACT	p.A226fs
KIRP	TCGA-A4-7584-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000561220.2	chr15	45447999:45448127:45453034:45453188:45453935:45454168,	45453035	45453188	45453182	45453182	Frame_Shift_Del	C	-	p.L1283fs
KIRP	TCGA-A4-8098-01	UEVLD	ENST00000379387.4,ENST00000396197.3,ENST00000535484.1,ENST00000396196.2,ENST00000320750.6,ENST00000540666.1,ENST00000543987.1	chr11	18566169:18566343:18568426:18568597:18579774:18579877,	18568427	18568597	18568448	18568448	Frame_Shift_Del	G	-	p.L289fs
KIRP	TCGA-A4-8098-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5790239	5790239	Frame_Shift_Del	T	-	p.L1618fs
KIRP	TCGA-A4-8098-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123210181:123210321:123211806:123211908:123215229:123215378,	123211807	123211908	123211859	123211862	Frame_Shift_Del	AGAT	-	p.909_910del
KIRP	TCGA-A4-8098-01	MSH3	ENST00000265081.6	chr5	80149948:80150135:80160631:80160761:80168934:80169106,	80160632	80160761	80160742	80160743	Frame_Shift_Ins	-	GAAA	p.D1037fs
KIRP	TCGA-A4-8098-01	NCOA2	ENST00000518363.2,ENST00000267974.4,ENST00000452400.2,ENST00000518287.2	chr8	71036922:71037100:71039047:71039282:71040667:71040745,	71039048	71039282	71039066	71039067	Frame_Shift_Ins	-	AAAC	p.P1300fs
KIRP	TCGA-A4-A48D-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730035	37730036	Frame_Shift_Ins	-	T	p.S762fs
KIRP	TCGA-A4-A48D-01	CYP3A43	ENST00000481362.1,ENST00000312017.5,ENST00000222382.5,ENST00000434806.1,ENST00000421837.2	chr7	99425665:99425809:99434075:99434169:99436742:99436795,	99434076	99434169	99434139	99434139	Frame_Shift_Del	T	-	p.P45fs
KIRP	TCGA-A4-A48D-01	DECR1	ENST00000517761.1	chr8	91018263:91018505:91029351:91029554:91031136:91031194,91013744:91013789:91029351:91029554:91031136:91031194,91013744:91013789:91029351:91029554:91031043:91031194,91017519:91017597:91029351:91029554:91031136:91031194,91027768:91027894:91029351:91029554:91031136:91031194,	91029352	91029554	91029497	91029498	Frame_Shift_Ins	-	A	p.G72fs
KIRP	TCGA-A4-A48D-01	DECR1	ENST00000517314.1	chr8	91013744:91013789:91029430:91029554:91031136:91031194,	91029431	91029554	91029497	91029498	Frame_Shift_Ins	-	A	p.G72fs
KIRP	TCGA-B3-8121-01	GIT2	ENST00000360185.4,ENST00000551209.1	chr12	110376969:110377052:110385060:110385309:110390896:110391039,110376969:110377052:110385060:110385309:110388971:110389121,110383064:110383154:110385060:110385309:110388971:110389121,110383064:110383154:110385060:110385309:110390896:110391039,	110385061	110385309	110385121	110385127	Frame_Shift_Del	TGGGAGA	-	p.526_528del
KIRP	TCGA-B3-8121-01	GIT2	ENST00000549999.1	chr12	110376969:110377052:110385060:110386651:110388971:110389121,	110385061	110386651	110385121	110385127	Frame_Shift_Del	TGGGAGA	-	p.526_528del
KIRP	TCGA-B3-8121-01	NUP50	ENST00000396096.2,ENST00000347635.4,ENST00000407019.2	chr22	45567480:45567564:45574118:45574781:45577166:45577248,45571774:45571961:45574118:45574781:45577166:45577248,	45574119	45574781	45574449	45574449	Frame_Shift_Del	T	-	p.L224fs
KIRP	TCGA-G7-6790-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510915	169510916	Frame_Shift_Ins	-	TT	p.M1138fs
KIRP	TCGA-G7-6790-01	GREB1	ENST00000381483.2,ENST00000263834.5,ENST00000381486.2,ENST00000234142.5,ENST00000389825.3	chr2	11702588:11702708:11706605:11706782:11716478:11716661,	11706606	11706782	11706688	11706688	Frame_Shift_Del	G	-	p.V120fs
KIRP	TCGA-G7-6790-01	RPL10A	ENST00000467020.1	chr6	35436578:35436650:35436723:35437306:35437955:35438128,	35436724	35437306	35437266	35437267	Frame_Shift_Ins	-	A	p.L90fs
KIRP	TCGA-G7-6790-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000464112.1	chr6	35436723:35436804:35437157:35437306:35437955:35438128,	35437158	35437306	35437266	35437267	Frame_Shift_Ins	-	A	p.L90fs
KIRP	TCGA-A4-7996-01	TRAPPC9	ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	141445210:141445339:141449150:141449296:141460888:141461029,	141449151	141449296	141449171	141449172	Frame_Shift_Del	TT	-	p.335_335del
KIRP	TCGA-A4-7996-01	MAT2B	ENST00000280969.5,ENST00000518095.1,ENST00000321757.6	chr5	162939007:162939202:162940560:162940675:162940847:162941000,	162940561	162940675	162940576	162940577	Frame_Shift_Ins	-	A	p.H92fs
KIRP	TCGA-A4-7996-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1	chr11	9172226:9172311:9173904:9173989:9182259:9182412,	9173905	9173989	9173965	9173965	Frame_Shift_Del	G	-	p.L821fs
KIRP	TCGA-A4-7996-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717645	89717646	Frame_Shift_Del	AT	-	p.223_224del
KIRP	TCGA-A4-7732-01	SYP	ENST00000479808.1,ENST00000263233.4	chrX	49049728:49049920:49050622:49050818:49055426:49055492,49049728:49049920:49050622:49050818:49054173:49054298,	49050623	49050818	49050637	49050638	Frame_Shift_Del	TG	-	p.137_137del
KIRP	TCGA-KV-A6GD-01	ANKRD44	ENST00000424317.1,ENST00000282272.8,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197873667:197873755:197878234:197878436:197889919:197889991,	197878235	197878436	197878244	197878244	Frame_Shift_Del	G	-	p.H639fs
KIRP	TCGA-KV-A6GD-01	SYVN1	ENST00000532771.1	chr11	64899718:64899822:64900202:64900251:64900392:64900545,64898940:64899067:64900202:64900251:64900392:64900545,	64900203	64900251	64900251	64900251	Frame_Shift_Del	T	-	p.M127fs
KIRP	TCGA-KV-A6GD-01	SYVN1	ENST00000449943.1	chr11	64898940:64899067:64899718:64900251:64900392:64900545,	64899719	64900251	64900251	64900251	Frame_Shift_Del	T	-	p.M127fs
KIRP	TCGA-BQ-7060-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151246960:151247050:151271143:151271311:151336589:151336742,	151271144	151271311	151271258	151271259	Frame_Shift_Ins	-	AT	p.I2427fs
KIRP	TCGA-BQ-7060-01	MYO6	ENST00000369977.3,ENST00000369985.4,ENST00000369981.3,ENST00000369975.1	chr6	76540132:76540262:76542558:76542664:76545617:76545673,	76542559	76542664	76542650	76542650	Frame_Shift_Del	A	-	p.T161fs
KIRP	TCGA-BQ-7060-01	KBTBD4	ENST00000533290.1,ENST00000526005.1,ENST00000430070.2,ENST00000395288.2	chr11	47593778:47595342:47597144:47597251:47598962:47599576,	47597145	47597251	47597183	47597183	Frame_Shift_Del	T	-	p.R236fs
KIRP	TCGA-BQ-7060-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637880	176637880	Frame_Shift_Del	T	-	p.I827fs
KIRP	TCGA-MH-A55Z-01	EIF2AK1	ENST00000536084.1,ENST00000199389.6	chr7	6077054:6077155:6078190:6078302:6080522:6080850,	6078191	6078302	6078295	6078296	Frame_Shift_Ins	-	A	p.Y376fs
KIRP	TCGA-MH-A55Z-01	EIF2AK1	ENST00000536084.1,ENST00000199389.6	chr7	6077054:6077155:6078190:6078302:6080522:6080850,	6078191	6078302	6078298	6078299	Frame_Shift_Ins	-	A	p.Q375fs
KIRP	TCGA-MH-A55Z-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000502673.1,ENST00000512607.2,ENST00000452673.2	chr5	179135978:179136060:179136873:179137066:179143105:179143202,	179136874	179137066	179136997	179136997	Frame_Shift_Del	C	-	p.K217fs
KIRP	TCGA-MH-A55Z-01	CANX	ENST00000503126.1	chr5	179135978:179136060:179136919:179137066:179143105:179143202,	179136920	179137066	179136997	179136997	Frame_Shift_Del	C	-	p.K217fs
KIRP	TCGA-MH-A55Z-01	EIF2AK1	ENST00000536084.1,ENST00000199389.6	chr7	6077054:6077155:6078190:6078302:6080522:6080850,	6078191	6078302	6078297	6078298	Frame_Shift_Del	CT	-	p.375_376del
KIRP	TCGA-A4-7288-01	PLA2G6	ENST00000335539.3,ENST00000402064.1,ENST00000332509.3,ENST00000498338.1	chr22	38530994:38531091:38535988:38536176:38539111:38539295,	38535989	38536176	38536176	38536176	Frame_Shift_Del	G	-	p.L204fs
KIRP	TCGA-A4-7288-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679712	21679713	Frame_Shift_Del	AT	-	p.230_231del
KIRP	TCGA-A4-7288-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679712	21679713	Frame_Shift_Del	AT	-	p.230_231del
KIRP	TCGA-2Z-A9JL-01	PMS2	ENST00000382321.4,ENST00000441476.2,ENST00000265849.7	chr7	6017218:6017388:6018226:6018327:6022454:6022622,	6018227	6018327	6018319	6018320	Frame_Shift_Del	GT	-	p.728_728del
KIRP	TCGA-2Z-A9JL-01	PDE4A	ENST00000440014.2,ENST00000352831.6,ENST00000592685.1,ENST00000590407.1,ENST00000380702.2,ENST00000344979.3,ENST00000293683.5	chr19	10572201:10572356:10572552:10572675:10574468:10574651,	10572553	10572675	10572554	10572554	Frame_Shift_Del	T	-	p.V541fs
KIRP	TCGA-DW-7838-01	DMTF1	ENST00000447863.1,ENST00000394702.3,ENST00000394703.5,ENST00000413276.2,ENST00000412139.2,ENST00000579850.1,ENST00000579677.1,ENST00000411766.2,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000584619.1,ENST00000547146.2,ENST00000425406.1	chr7	86803908:86803985:86808860:86809018:86810624:86810657,	86808861	86809018	86808890	86808890	Frame_Shift_Del	C	-	p.I183fs
KIRP	TCGA-DW-7838-01	SLC31A1	ENST00000374212.4	chr9	115983866:115983958:116018393:116018557:116019392:116019465,	116018394	116018557	116018468	116018469	Frame_Shift_Ins	-	C	p.S14fs
KIRP	TCGA-BQ-5876-01	SMARCB1	ENST00000407082.3,ENST00000407422.3,ENST00000344921.6,ENST00000263121.7	chr22	24158956:24159123:24167411:24167602:24175758:24175890,	24167412	24167602	24167461	24167461	Frame_Shift_Del	A	-	p.D282fs
KIRP	TCGA-AL-3468-01	POLDIP3	ENST00000451060.2	chr22	42995703:42995799:42997975:42998113:42998775:42998972,	42997976	42998113	42998037	42998037	Frame_Shift_Del	G	-	p.P159fs
KIRP	TCGA-AL-3468-01	POLDIP3	ENST00000445215.1,ENST00000252115.5,ENST00000491021.1	chr22	42995703:42995799:42997975:42998062:42998775:42998972,	42997976	42998062	42998037	42998037	Frame_Shift_Del	G	-	p.P159fs
KIRP	TCGA-PJ-A8JU-01	RNF185	ENST00000468921.1	chr22	31556228:31556289:31583032:31583256:31588669:31588688,31578954:31579052:31583032:31583256:31588669:31588688,	31583033	31583256	31583132	31583132	Frame_Shift_Del	G	-	p.A17fs
KIRP	TCGA-PJ-A8JU-01	GDF15	ENST00000595973.2	chr19	18493159:18493257:18496726:18497276:18499095:18499157,	18496727	18497276	18497000	18497001	Frame_Shift_Del	AT	-	.
KIRP	TCGA-PJ-A8JU-01	GDF15	ENST00000595973.2	chr19	18493159:18493257:18496726:18497276:18499095:18499157,	18496727	18497276	18496998	18497015	Frame_Shift_Del	AACCTGCACAGCCATGCC	-	.
KIRP	TCGA-A4-7287-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730588	37730589	Frame_Shift_Ins	-	G	p.*578fs
KIRP	TCGA-A4-7288-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679712	21679713	Frame_Shift_Del	AT	-	p.N217fs
KIRP	TCGA-A4-7288-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679712	21679713	Frame_Shift_Del	AT	-	p.N217fs
KIRP	TCGA-A4-7583-01	HDGF	ENST00000495212.1	chr1	156713954:156714140:156714799:156715165:156721134:156721288,	156714800	156715165	156715103	156715104	Frame_Shift_Ins	-	A	p.W50fs
KIRP	TCGA-A4-7583-01	DALRD3	ENST00000313778.5	chr3	49055045:49055302:49055455:49055751:49058278:49058491,	49055456	49055751	49055671	49055671	Frame_Shift_Del	G	-	p.P82fs
KIRP	TCGA-A4-7584-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000561220.2	chr15	45447999:45448127:45453034:45453188:45453935:45454168,	45453035	45453188	45453182	45453182	Frame_Shift_Del	C	-	p.P1284fs
KIRP	TCGA-A4-7584-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1,ENST00000475233.1	chrX	44833910:44833960:44870205:44870264:44879854:44879975,	44870206	44870264	44870257	44870257	Frame_Shift_Del	T	-	p.F146fs
KIRP	TCGA-A4-7585-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138452043	138452043	Frame_Shift_Del	A	-	p.H400fs
KIRP	TCGA-A4-7585-01	PPRC1	ENST00000278070.2,ENST00000413464.2	chr10	103897606:103897795:103898375:103898522:103898635:103898737,	103898376	103898522	103898442	103898442	Frame_Shift_Del	A	-	p.N137fs
KIRP	TCGA-A4-7585-01	GAA	ENST00000572080.1,ENST00000302262.3,ENST00000390015.3	chr17	78084800:78084824:78085781:78085899:78086376:78086510,	78085782	78085899	78085893	78085894	Frame_Shift_Del	CC	-	p.S583fs
KIRP	TCGA-A4-7732-01	SEC23A	ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39511989:39512076:39514366:39514528:39517855:39517933,	39514367	39514528	39514526	39514526	Frame_Shift_Del	A	-	p.F378fs
KIRP	TCGA-A4-7732-01	SYP	ENST00000479808.1,ENST00000263233.4	chrX	49049728:49049920:49050622:49050818:49055426:49055492,49049728:49049920:49050622:49050818:49054173:49054298,	49050623	49050818	49050637	49050638	Frame_Shift_Del	TG	-	p.NK136fs
KIRP	TCGA-A4-7734-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34927198	34927198	Frame_Shift_Del	A	-	p.S1887fs
KIRP	TCGA-A4-7996-01	MAT2B	ENST00000280969.5,ENST00000518095.1,ENST00000321757.6	chr5	162939007:162939202:162940560:162940675:162940847:162941000,	162940561	162940675	162940576	162940577	Frame_Shift_Ins	-	A	p.L92fs
KIRP	TCGA-A4-7996-01	CYP21A2	ENST00000435122.2,ENST00000479074.1,ENST00000483041.1,ENST00000418967.2,ENST00000479730.1	chr6	32007541:32007612:32007781:32007982:32008182:32008361,	32007782	32007982	32007842	32007846	Frame_Shift_Del	CAGCC	-	p.QP267fs
KIRP	TCGA-A4-7996-01	TRAPPC9	ENST00000438773.2,ENST00000389328.4,ENST00000520857.1,ENST00000389327.3	chr8	141445210:141445339:141449150:141449296:141460888:141461029,	141449151	141449296	141449171	141449172	Frame_Shift_Del	TT	-	p.N335fs
KIRP	TCGA-A4-7996-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717645	89717646	Frame_Shift_Del	AT	-	p.I224fs
KIRP	TCGA-A4-7996-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1	chr11	9172226:9172311:9173904:9173989:9182259:9182412,	9173905	9173989	9173965	9173965	Frame_Shift_Del	G	-	p.L822fs
KIRP	TCGA-A4-7997-01	EXOC5	ENST00000556629.1,ENST00000555148.1,ENST00000340918.7,ENST00000413566.2	chr14	57700705:57700750:57702428:57702538:57704055:57704084,	57702429	57702538	57702498	57702498	Frame_Shift_Del	A	-	p.F200fs
KIRP	TCGA-A4-7997-01	MEP1B	ENST00000581447.1,ENST00000269202.6	chr18	29784144:29784323:29787214:29787433:29788081:29788234,	29787215	29787433	29787415	29787415	Frame_Shift_Del	A	-	p.N250fs
KIRP	TCGA-A4-8098-01	MSH3	ENST00000265081.6	chr5	80149948:80150135:80160631:80160761:80168934:80169106,	80160632	80160761	80160742	80160743	Frame_Shift_Ins	-	GAAA	p.-1038fs
KIRP	TCGA-A4-8098-01	NCOA2	ENST00000518363.2,ENST00000267974.4,ENST00000452400.2,ENST00000518287.2	chr8	71036922:71037100:71039047:71039282:71040667:71040745,	71039048	71039282	71039066	71039067	Frame_Shift_Ins	-	AAAC	p.FI1299fs
KIRP	TCGA-A4-8098-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5790239	5790239	Frame_Shift_Del	T	-	p.F1619fs
KIRP	TCGA-A4-8098-01	UEVLD	ENST00000379387.4,ENST00000396197.3,ENST00000535484.1,ENST00000396196.2,ENST00000320750.6,ENST00000540666.1,ENST00000543987.1	chr11	18566169:18566343:18568426:18568597:18579774:18579877,	18568427	18568597	18568448	18568448	Frame_Shift_Del	G	-	p.L290fs
KIRP	TCGA-A4-8098-01	KL	ENST00000426690.2,ENST00000487852.1	chr13	33627903:33628414:33629183:33629502:33634815:33635665,	33629184	33629502	33629467	33629467	Frame_Shift_Del	A	-	p.T231fs
KIRP	TCGA-A4-8098-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123210181:123210321:123211806:123211908:123215229:123215378,	123211807	123211908	123211859	123211862	Frame_Shift_Del	AGAT	-	p.QI909fs
KIRP	TCGA-A4-8312-01	BICD1	ENST00000281474.5	chr12	32490432:32490640:32491719:32491913:32520603:32520679,32490432:32490750:32491719:32491913:32520603:32520679,	32491720	32491913	32491723	32491724	Frame_Shift_Del	AT	-	p.QF858fs
KIRP	TCGA-A4-8515-01	PUS3	ENST00000534158.1	chr11	125765564:125765684:125765801:125766225:125773064:125773116,	125765802	125766225	125765906	125765922	Frame_Shift_Del	TCTCTTCAATGGTATTA	-	p.NNTIEEK86fs
KIRP	TCGA-A4-8515-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000564155.1,ENST00000393512.3	chr16	71766287:71767062:71768511:71768610:71772844:71773005,	71768512	71768610	71768532	71768533	Frame_Shift_Ins	-	A	p.S783fs
KIRP	TCGA-A4-8515-01	TRIM37	ENST00000585287.1	chr17	57076741:57076820:57078958:57079102:57089688:57089768,	57078959	57079102	57078973	57078974	Frame_Shift_Del	TG	-	p.Q933fs
KIRP	TCGA-A4-8515-01	TRIM37	ENST00000262294.7,ENST00000393065.2,ENST00000393066.3	chr17	57076741:57076820:57078958:57079075:57089688:57089768,	57078959	57079075	57078973	57078974	Frame_Shift_Del	TG	-	p.Q933fs
KIRP	TCGA-A4-8516-01	GSK3B	ENST00000264235.8	chr3	119545547:119545702:119582265:119582452:119595259:119595355,119562101:119562200:119582265:119582452:119595259:119595355,	119582266	119582452	119582397	119582398	Frame_Shift_Ins	-	C	p.V322fs
KIRP	TCGA-A4-8516-01	ZNF106	ENST00000263805.4,ENST00000565611.1,ENST00000565500.1,ENST00000565380.1	chr15	42707937:42709558:42710002:42710149:42713258:42713330,	42710003	42710149	42710119	42710120	Frame_Shift_Ins	-	A	p.R1827fs
KIRP	TCGA-A4-8516-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53504657:53504834:53513065:53513137:53513797:53513903,	53513066	53513137	53513071	53513071	Frame_Shift_Del	A	-	p.T903fs
KIRP	TCGA-A4-8516-01	TYK2	ENST00000525621.1,ENST00000592137.1,ENST00000264818.6,ENST00000524462.1	chr19	10463643:10463774:10464203:10464322:10464717:10464779,	10464204	10464322	10464284	10464285	Frame_Shift_Ins	-	T	p.G983fs
KIRP	TCGA-A4-8517-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32466287:32466439:32467759:32467930:32472972:32473063,	32467760	32467930	32467853	32467868	Frame_Shift_Del	AGGTGGCAATCAGAAT	-	p.ILIATS648fs
KIRP	TCGA-A4-8517-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76696864:76697020:76726418:76726651:76763552:76763676,	76726419	76726651	76726602	76726603	Frame_Shift_Ins	-	TA	p.T797fs
KIRP	TCGA-A4-8517-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18853529:18853776:18856750:18856973:18858774:18858929,	18856751	18856973	18856931	18856931	Frame_Shift_Del	C	-	p.L2013fs
KIRP	TCGA-AL-3472-01	BIRC6	ENST00000421745.2	chr2	32658717:32658872:32660563:32660653:32661120:32661252,	32660564	32660653	32660618	32660618	Frame_Shift_Del	A	-	p.E1156fs
KIRP	TCGA-AL-3472-01	PSAT1	ENST00000376588.3	chr9	80932591:80932720:80942966:80943104:80943896:80944370,	80942967	80943104	80942983	80942984	Frame_Shift_Ins	-	A	p.K296fs
KIRP	TCGA-AL-3473-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437889	52437889	Frame_Shift_Del	C	-	p.G424fs
KIRP	TCGA-AL-3473-01	PHB	ENST00000504124.1,ENST00000300408.3,ENST00000512041.2,ENST00000508009.1,ENST00000446735.1,ENST00000419140.2	chr17	47484122:47484216:47486403:47486520:47486692:47486835,	47486404	47486520	47486482	47486483	Frame_Shift_Del	CT	-	p.E144fs
KIRP	TCGA-AL-7173-01	LARS	ENST00000511505.1,ENST00000545646.1,ENST00000394434.2,ENST00000503654.1	chr5	145551472:145551553:145552249:145552337:145557109:145557228,	145552250	145552337	145552256	145552256	Frame_Shift_Del	T	-	p.K69fs
KIRP	TCGA-B1-5398-01	FANCM	ENST00000555484.1	chr14	45665656:45665750:45667846:45668038:45669072:45669130,	45667847	45668038	45667882	45667882	Frame_Shift_Del	T	-	p.Y1918fs
KIRP	TCGA-B1-5398-01	FANCM	ENST00000267430.5,ENST00000554809.1,ENST00000542564.2,ENST00000556250.1	chr14	45665656:45665750:45667846:45668138:45669072:45669130,	45667847	45668138	45667882	45667882	Frame_Shift_Del	T	-	p.Y1918fs
KIRP	TCGA-B1-5398-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000565605.1,ENST00000569240.1	chr16	58622724:58622810:58633139:58633415:58663631:58663719,	58633140	58633415	58633189	58633190	Frame_Shift_Ins	-	CCAC	p.Q18fs
KIRP	TCGA-B3-3925-01	OGG1	ENST00000429146.1,ENST00000416333.1	chr3	9796387:9796569:9798154:9798305:9798450:9798500,9793586:9793633:9798154:9798305:9798450:9798500,	9798155	9798305	9798226	9798227	Frame_Shift_Ins	-	AA	p.HC273fs
KIRP	TCGA-B3-3926-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132122	51132129	Frame_Shift_Del	CTAGACTT	-	p.RSLA101fs
KIRP	TCGA-B3-4104-01	SMPD2	ENST00000258052.3	chr6	109763412:109763502:109763745:109763828:109763954:109764087,	109763746	109763828	109763791	109763791	Frame_Shift_Del	C	-	p.R152fs
KIRP	TCGA-B3-8121-01	GIT2	ENST00000360185.4,ENST00000551209.1	chr12	110376969:110377052:110385060:110385309:110390896:110391039,110376969:110377052:110385060:110385309:110388971:110389121,110383064:110383154:110385060:110385309:110388971:110389121,110383064:110383154:110385060:110385309:110390896:110391039,	110385061	110385309	110385121	110385127	Frame_Shift_Del	TGGGAGA	-	p.YLP475fs
KIRP	TCGA-B3-8121-01	GIT2	ENST00000549999.1	chr12	110376969:110377052:110385060:110386651:110388971:110389121,	110385061	110386651	110385121	110385127	Frame_Shift_Del	TGGGAGA	-	p.YLP475fs
KIRP	TCGA-B9-4115-01	F13B	ENST00000367412.1	chr1	197019826:197020009:197021763:197021964:197024844:197025027,	197021764	197021964	197021793	197021794	Frame_Shift_Del	TC	-	p.E509fs
KIRP	TCGA-B9-4115-01	CTBP1	ENST00000506180.1	chr4	1221986:1222131:1231970:1232125:1242703:1242764,1221986:1222131:1231970:1232125:1235112:1235251,1221986:1222131:1231970:1232125:1243436:1243719,	1231971	1232125	1232016	1232016	Frame_Shift_Del	A	-	p.T39fs
KIRP	TCGA-B9-4117-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535489	40535490	Frame_Shift_Ins	-	G	p.S313fs
KIRP	TCGA-B9-4117-01	AMPD2	ENST00000528454.1	chr1	110162761:110162900:110167924:110168055:110168283:110168414,110163773:110163888:110167924:110168055:110168283:110168414,110166460:110166711:110167924:110168055:110168283:110168414,	110167925	110168055	110167929	110167930	Frame_Shift_Ins	-	C	p.AG86fs
KIRP	TCGA-B9-4117-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4,ENST00000586588.1	chr19	10250351:10250493:10250721:10251004:10251456:10251585,	10250722	10251004	10250846	10250847	Frame_Shift_Ins	-	C	p.LP1211fs
KIRP	TCGA-B9-4617-01	SPG7	ENST00000563218.1,ENST00000566221.1,ENST00000268704.2	chr16	89611133:89611180:89613065:89613168:89614410:89614521,	89613066	89613168	89613076	89613077	Frame_Shift_Ins	-	GATTTTT	p.D487fs
KIRP	TCGA-B9-4617-01	PKN1	ENST00000242783.6,ENST00000586557.1,ENST00000585619.1,ENST00000585839.1,ENST00000590097.1,ENST00000342216.4	chr19	14551954:14552255:14554281:14554433:14557237:14557248,	14554282	14554433	14554306	14554307	Frame_Shift_Ins	-	T	p.G116fs
KIRP	TCGA-B9-5155-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609125	179609129	Frame_Shift_Del	GTGTT	-	p.VF558fs
KIRP	TCGA-B9-5155-01	NAGLU	ENST00000225927.2	chr17	40690687:40690773:40692967:40693224:40695045:40695338,	40692968	40693224	40693013	40693014	Frame_Shift_Ins	-	TT	p.*271fs
KIRP	TCGA-B9-5156-01	DARS	ENST00000264161.4,ENST00000537273.1,ENST00000422708.1	chr2	136672038:136672081:136673795:136673942:136678022:136678123,	136673796	136673942	136673870	136673871	Frame_Shift_Ins	-	A	p.Q344fs
KIRP	TCGA-B9-5156-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39587574	39587574	Frame_Shift_Del	A	-	p.V605fs
KIRP	TCGA-B9-5156-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRP	TCGA-BQ-5875-01	TMEM144	ENST00000511532.1,ENST00000514558.1,ENST00000504569.1,ENST00000508243.1,ENST00000296529.6	chr4	159136342:159136465:159138472:159138572:159140461:159140542,	159138473	159138572	159138552	159138552	Frame_Shift_Del	A	-	p.L104fs
KIRP	TCGA-BQ-5875-01	SEPT7	ENST00000350320.6,ENST00000425198.1,ENST00000399035.3,ENST00000435235.1,ENST00000399034.2,ENST00000494488.2	chr7	35925437:35925489:35930277:35930403:35937857:35937993,	35930278	35930403	35930341	35930341	Frame_Shift_Del	A	-	p.R298fs
KIRP	TCGA-BQ-5875-01	MCTS1	ENST00000371317.5	chrX	119737834:119738102:119739261:119739414:119739933:119739991,	119739262	119739414	119739292	119739293	Frame_Shift_Ins	-	AT	p.CP15fs
KIRP	TCGA-BQ-5876-01	SMARCB1	ENST00000407082.3,ENST00000407422.3,ENST00000344921.6,ENST00000263121.7	chr22	24158956:24159123:24167411:24167602:24175758:24175890,	24167412	24167602	24167461	24167461	Frame_Shift_Del	A	-	p.D291fs
KIRP	TCGA-BQ-5877-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541245	187541245	Frame_Shift_Del	T	-	p.S2165fs
KIRP	TCGA-BQ-5877-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
KIRP	TCGA-BQ-5877-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRP	TCGA-BQ-5877-01	PPM1F	ENST00000407142.1,ENST00000538191.1,ENST00000397495.4,ENST00000263212.5	chr22	22279941:22280035:22285519:22285663:22287762:22287951,	22285520	22285663	22285579	22285579	Frame_Shift_Del	T	-	p.I110fs
KIRP	TCGA-BQ-5878-01	RAB6A	ENST00000336083.3,ENST00000537446.1,ENST00000310653.6,ENST00000536566.1,ENST00000541973.1	chr11	73390730:73390765:73418464:73418558:73427295:73427407,	73418465	73418558	73418504	73418504	Frame_Shift_Del	A	-	p.F152fs
KIRP	TCGA-BQ-5878-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRP	TCGA-BQ-5878-01	PCSK4	ENST00000588671.1,ENST00000588195.1,ENST00000300954.5	chr19	1488186:1488279:1489791:1489896:1490156:1490334,	1489792	1489896	1489873	1489873	Frame_Shift_Del	A	-	p.F71fs
KIRP	TCGA-BQ-5879-01	ACTR1B	ENST00000451664.1	chr2	98274686:98274779:98274889:98275466:98275814:98275940,	98274890	98275466	98275011	98275014	Frame_Shift_Del	GAGT	-	p.HS178fs
KIRP	TCGA-BQ-5879-01	ACTR1B	ENST00000289228.5	chr2	98274722:98274779:98274889:98275106:98275341:98275466,	98274890	98275106	98275011	98275014	Frame_Shift_Del	GAGT	-	p.HS178fs
KIRP	TCGA-BQ-5879-01	LSM14A	ENST00000540746.2,ENST00000588582.2,ENST00000544216.3,ENST00000586157.1,ENST00000433627.5	chr19	34706500:34706566:34710295:34710478:34710610:34710782,	34710296	34710478	34710448	34710449	Frame_Shift_Del	AG	-	p.R312fs
KIRP	TCGA-BQ-5882-01	DAP3	ENST00000463575.1,ENST00000470830.1	chr1	155691307:155691409:155695172:155695202:155695782:155695810,	155695173	155695202	155695184	155695185	Frame_Shift_Ins	-	A	p.*95fs
KIRP	TCGA-BQ-5882-01	CCDC13	ENST00000479576.1,ENST00000310232.6,ENST00000492806.1	chr3	42788748:42788865:42793427:42793517:42794066:42794209,	42793428	42793517	42793437	42793438	Frame_Shift_Ins	-	TC	p.E198fs
KIRP	TCGA-BQ-5884-01	MICU1	ENST00000361114.5,ENST00000603011.1,ENST00000604238.1,ENST00000401998.3,ENST00000398761.4	chr10	74310936:74311099:74322652:74322821:74326390:74326517,	74322653	74322821	74322786	74322786	Frame_Shift_Del	A	-	p.L66fs
KIRP	TCGA-BQ-5884-01	AMOTL1	ENST00000317837.9,ENST00000433060.2,ENST00000317829.8	chr11	94599266:94599333:94602362:94602638:94603853:94609913,	94602363	94602638	94602565	94602565	Frame_Shift_Del	C	-	p.G897fs
KIRP	TCGA-BQ-5885-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222347159:222347410:222365736:222365892:222428450:222429114,	222365737	222365892	222365873	222365873	Frame_Shift_Del	G	-	p.Y281fs
KIRP	TCGA-BQ-5885-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540288	187540291	Frame_Shift_Del	TCCA	-	p.IG2483fs
KIRP	TCGA-BQ-5887-01	RNMT	ENST00000383314.2,ENST00000589866.1,ENST00000592764.1	chr18	13730625:13730754:13731474:13731933:13734462:13734598,	13731475	13731933	13731629	13731630	Frame_Shift_Ins	-	T	p.V38fs
KIRP	TCGA-BQ-5892-01	SAR1B	ENST00000503318.1,ENST00000439578.1,ENST00000505758.1,ENST00000502286.1,ENST00000402673.2	chr5	133948380:133948446:133956622:133956742:133959651:133959727,	133956623	133956742	133956720	133956720	Frame_Shift_Del	T	-	p.K27fs
KIRP	TCGA-BQ-7044-01	ITPKA	ENST00000260386.5,ENST00000462816.1	chr15	41794194:41794399:41794599:41794701:41794985:41795057,	41794600	41794701	41794669	41794670	Frame_Shift_Ins	-	A	p.R360fs
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000467306.1	chr1	151734851:151734976:151735425:151735622:151735802:151735810,	151735426	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.VIVER54fs
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000486707.1	chr1	151734851:151734976:151735430:151735622:151735802:151735810,	151735431	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.VIVER54fs
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000368829.3,ENST00000481777.1,ENST00000461182.1,ENST00000478926.1	chr1	151734851:151734976:151735465:151735622:151735802:151735810,	151735466	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.VIVER54fs
KIRP	TCGA-BQ-7045-01	MITF	ENST00000472437.1,ENST00000394355.2,ENST00000328528.6,ENST00000352241.4,ENST00000448226.2,ENST00000314557.6,ENST00000314589.5,ENST00000394351.3,ENST00000461014.1,ENST00000451708.1	chr3	69987107:69987200:69988248:69988332:69990386:69990482,	69988249	69988332	69988260	69988261	Frame_Shift_Ins	-	T	p.*199fs
KIRP	TCGA-BQ-7045-01	MITF	ENST00000478490.1	chr3	69987107:69987200:69988248:69988297:69990386:69990482,	69988249	69988297	69988260	69988261	Frame_Shift_Ins	-	T	p.*199fs
KIRP	TCGA-BQ-7046-01	RSPRY1	ENST00000537866.1,ENST00000564530.1,ENST00000394420.4	chr16	57255183:57255327:57261253:57261365:57264622:57264725,	57261254	57261365	57261323	57261323	Frame_Shift_Del	A	-	p.N411fs
KIRP	TCGA-BQ-7046-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698866	30698866	Frame_Shift_Del	A	-	p.T241fs
KIRP	TCGA-BQ-7048-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184931856	184931856	Frame_Shift_Del	A	-	p.E622fs
KIRP	TCGA-BQ-7051-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151877795:151879679:151880058:151880241:151882642:151882716,	151880059	151880241	151880116	151880116	Frame_Shift_Del	A	-	p.F1736fs
KIRP	TCGA-BQ-7051-01	MATN2	ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000523490.1,ENST00000524308.1	chr8	98900302:98900470:98943180:98943750:98954004:98954127,	98943181	98943750	98943606	98943609	Frame_Shift_Del	CTAA	-	p.LI190fs
KIRP	TCGA-BQ-7051-01	ADAMTS20	ENST00000389420.3,ENST00000553158.1	chr12	43822437:43822602:43823419:43823527:43824154:43824274,	43823420	43823527	43823478	43823478	Frame_Shift_Del	A	-	p.L1145fs
KIRP	TCGA-BQ-7051-01	COX5A	ENST00000562233.1	chr15	75219106:75219228:75221456:75221573:75230255:75230407,75212652:75212783:75221456:75221573:75230255:75230407,	75221457	75221573	75221461	75221461	Frame_Shift_Del	A	-	p.R71fs
KIRP	TCGA-BQ-7053-01	TMEM30A	ENST00000370050.5,ENST00000518161.1,ENST00000230461.6	chr6	75970539:75970627:75974946:75975054:75977356:75977464,	75974947	75975054	75975041	75975042	Frame_Shift_Del	AT	-	p.M120fs
KIRP	TCGA-BQ-7056-01	TARBP2	ENST00000394357.2,ENST00000549572.1,ENST00000551741.1,ENST00000549679.1,ENST00000549028.1	chr12	53895149:53895245:53895798:53895968:53896810:53896913,53895402:53895492:53895798:53895968:53896810:53896913,	53895799	53895968	53895924	53895925	Frame_Shift_Ins	-	T	p.Q60fs
KIRP	TCGA-BQ-7056-01	TARBP2	ENST00000548971.1	chr12	53895149:53895245:53895843:53895968:53896810:53896913,	53895844	53895968	53895924	53895925	Frame_Shift_Ins	-	T	p.Q60fs
KIRP	TCGA-BQ-7058-01	CDH17	ENST00000027335.3,ENST00000450165.2,ENST00000441892.2	chr8	95143103:95143220:95158155:95158395:95160971:95161102,	95158156	95158395	95158391	95158391	Frame_Shift_Del	C	-	p.G644fs
KIRP	TCGA-BQ-7059-01	OGG1	ENST00000449570.2	chr3	9798450:9798500:9800917:9800970:9807492:9807796,	9800918	9800970	9800959	9800960	Frame_Shift_Ins	-	T	p.*346fs
KIRP	TCGA-BQ-7059-01	OGG1	ENST00000302008.8	chr3	9798450:9798500:9800870:9800970:9807492:9807796,	9800871	9800970	9800959	9800960	Frame_Shift_Ins	-	T	p.*346fs
KIRP	TCGA-BQ-7059-01	KLHL7	ENST00000322275.5,ENST00000339077.5	chr7	23157529:23157583:23163395:23163498:23164306:23164400,23145735:23145765:23163395:23163498:23164306:23164400,	23163396	23163498	23163475	23163476	Frame_Shift_Ins	-	T	p.L45fs
KIRP	TCGA-BQ-7059-01	MCPH1	ENST00000344683.5	chr8	6312722:6312773:6335114:6335152:6338234:6338397,	6335115	6335152	6335132	6335133	Frame_Shift_Ins	-	A	p.D652fs
KIRP	TCGA-BQ-7059-01	DNAJC1	ENST00000376980.3	chr10	22094908:22095028:22171210:22171368:22193450:22193541,	22171211	22171368	22171214	22171214	Frame_Shift_Del	T	-	p.K325fs
KIRP	TCGA-BQ-7060-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151246960:151247050:151271143:151271311:151336589:151336742,	151271144	151271311	151271258	151271259	Frame_Shift_Ins	-	AT	p.I2416fs
KIRP	TCGA-BQ-7060-01	KBTBD4	ENST00000533290.1,ENST00000526005.1,ENST00000430070.2,ENST00000395288.2	chr11	47593778:47595342:47597144:47597251:47598962:47599576,	47597145	47597251	47597183	47597183	Frame_Shift_Del	T	-	p.R245fs
KIRP	TCGA-BQ-7061-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073973	197073974	Frame_Shift_Ins	-	A	p.H1470fs
KIRP	TCGA-BQ-7061-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073381	3073405	Frame_Shift_Del	GAGGCAGGCTGGGATACTGACACAG	-	p.PVSVSQPAS35fs
KIRP	TCGA-BQ-7061-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073381	3073405	Frame_Shift_Del	GAGGCAGGCTGGGATACTGACACAG	-	p.PVSVSQPAS35fs
KIRP	TCGA-BQ-7061-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073381	3073405	Frame_Shift_Del	GAGGCAGGCTGGGATACTGACACAG	-	p.PVSVSQPAS35fs
KIRP	TCGA-DW-5560-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000529907.1,ENST00000265636.5,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68315534:68315672:68318588:68318654:68321612:68321688,	68318589	68318654	68318634	68318637	Frame_Shift_Del	CATC	-	p.HP200fs
KIRP	TCGA-DW-5560-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123800094:123800207:123801767:123801903:123804446:123804578,	123801768	123801903	123801801	123801802	Frame_Shift_Ins	-	T	p.F967fs
KIRP	TCGA-DW-5560-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
KIRP	TCGA-DW-5561-01	GAPDH	ENST00000396861.1,ENST00000492719.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646278:6646382:6646474:6646556:6646749:6646964,	6646475	6646556	6646478	6646485	Frame_Shift_Del	TGCCTCCT	-	p.NASC149fs
KIRP	TCGA-DW-7834-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980419	201980420	Frame_Shift_Ins	-	G	p.G52fs
KIRP	TCGA-DW-7834-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980419	201980420	Frame_Shift_Ins	-	G	p.G52fs
KIRP	TCGA-DW-7838-01	DMTF1	ENST00000447863.1,ENST00000394702.3,ENST00000394703.5,ENST00000413276.2,ENST00000412139.2,ENST00000579850.1,ENST00000579677.1,ENST00000411766.2,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000584619.1,ENST00000547146.2,ENST00000425406.1	chr7	86803908:86803985:86808860:86809018:86810624:86810657,	86808861	86809018	86808890	86808890	Frame_Shift_Del	C	-	p.I184fs
KIRP	TCGA-DW-7838-01	SLC31A1	ENST00000374212.4	chr9	115983866:115983958:116018393:116018557:116019392:116019465,	116018394	116018557	116018468	116018469	Frame_Shift_Ins	-	C	p.Q14fs
KIRP	TCGA-DW-7838-01	SCRN2	ENST00000583090.1,ENST00000579856.1	chr17	45916326:45916372:45916809:45917009:45917556:45917738,45916326:45916372:45916809:45917009:45918035:45918209,	45916810	45917009	45916884	45916884	Frame_Shift_Del	A	-	p.F161fs
KIRP	TCGA-DW-7838-01	SCRN2	ENST00000582459.1	chr17	45916326:45916372:45916809:45917224:45917556:45917738,	45916810	45917224	45916884	45916884	Frame_Shift_Del	A	-	p.F161fs
KIRP	TCGA-DW-7840-01	ADTRP	ENST00000505099.1,ENST00000414691.3,ENST00000512139.1,ENST00000229583.5	chr6	11717541:11717647:11723581:11723733:11735800:11735889,11714610:11714745:11723581:11723733:11728559:11728790,11714610:11714745:11723581:11723733:11735800:11735889,	11723582	11723733	11723657	11723657	Frame_Shift_Del	C	-	p.A195fs
KIRP	TCGA-DZ-6132-01	RPL24	ENST00000495401.1	chr3	101399939:101400059:101401614:101401751:101404661:101404733,	101401615	101401751	101401697	101401698	Frame_Shift_Ins	-	A	p.W83fs
KIRP	TCGA-DZ-6132-01	SEC22A	ENST00000473494.2,ENST00000309934.4,ENST00000492595.1	chr3	122964745:122964861:122978370:122978436:122990368:122990511,	122978371	122978436	122978380	122978380	Frame_Shift_Del	G	-	p.D224fs
KIRP	TCGA-DZ-6132-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24908604	24908604	Frame_Shift_Del	T	-	p.K740fs
KIRP	TCGA-DZ-6132-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645179	70645179	Frame_Shift_Del	T	-	p.F543fs
KIRP	TCGA-DZ-6133-01	SCN8A	ENST00000550891.1,ENST00000355133.3,ENST00000354534.6,ENST00000545061.1	chr12	52139686:52139819:52145138:52145377:52156286:52156460,	52145139	52145377	52145329	52145329	Frame_Shift_Del	C	-	p.H775fs
KIRP	TCGA-DZ-6135-01	NFE2L3	ENST00000056233.3	chr7	26217622:26217742:26223320:26223404:26224152:26226745,	26223321	26223404	26223344	26223347	Frame_Shift_Del	TTCT	-	p.TS258fs
KIRP	TCGA-EV-5902-01	STMN4	ENST00000265770.7,ENST00000350889.4	chr8	27093991:27094422:27097487:27097679:27098570:27098776,	27097488	27097679	27097566	27097566	Frame_Shift_Del	T	-	p.K171fs
KIRP	TCGA-EV-5902-01	RABGAP1	ENST00000373647.4,ENST00000456584.1	chr9	125760875:125761045:125772632:125772807:125777821:125777915,	125772633	125772807	125772734	125772738	Frame_Shift_Del	TTCAG	-	p.PSV492fs
KIRP	TCGA-EV-5902-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30064321:30064435:30067814:30067937:30069257:30069475,	30067815	30067937	30067890	30067905	Frame_Shift_Del	AGGCTGCTGCAGATGA	-	p.RLLQMK359fs
KIRP	TCGA-EV-5902-01	NF2	ENST00000403435.1	chr22	30064321:30064435:30067901:30067937:30069257:30069475,	30067902	30067937	30067890	30067905	Frame_Shift_Del	AGGCTGCTGCAGATGA	-	p.RLLQMK359fs
KIRP	TCGA-EV-5903-01	MAP7	ENST00000454590.1,ENST00000438100.2,ENST00000354570.3,ENST00000544465.1,ENST00000432797.2	chr6	136687464:136687577:136693638:136693763:136698892:136699006,	136693639	136693763	136693761	136693761	Frame_Shift_Del	A	-	p.S252fs
KIRP	TCGA-EV-5903-01	VPS9D1	ENST00000561976.1,ENST00000389386.3	chr16	89775634:89775843:89776184:89776314:89776993:89777050,	89776185	89776314	89776218	89776219	Frame_Shift_Del	GA	-	p.S382fs
KIRP	TCGA-EV-5903-01	VPS9D1	ENST00000565023.1	chr16	89775634:89775843:89776184:89776317:89776993:89777050,	89776185	89776317	89776218	89776219	Frame_Shift_Del	GA	-	p.S382fs
KIRP	TCGA-G7-6789-01	CROCC	ENST00000465021.1	chr1	17292902:17293066:17294697:17294913:17296747:17296948,	17294698	17294913	17294710	17294710	Frame_Shift_Del	A	-	p.K1625fs
KIRP	TCGA-G7-6789-01	PTPRC	ENST00000348564.6,ENST00000352140.3,ENST00000530727.1,ENST00000367376.2,ENST00000594404.1,ENST00000529828.1,ENST00000442510.2,ENST00000367367.4	chr1	198677261:198677390:198678815:198678953:198682081:198682201,	198678816	198678953	198678927	198678927	Frame_Shift_Del	G	-	p.S380fs
KIRP	TCGA-G7-6789-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113306843:113306976:113308442:113308579:113309351:113309556,	113308443	113308579	113308552	113308559	Frame_Shift_Del	CTTTCTTC	-	p.FFLP245fs
KIRP	TCGA-G7-6789-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132011	51132012	Frame_Shift_Ins	-	A	p.LW140fs
KIRP	TCGA-G7-6790-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510915	169510916	Frame_Shift_Ins	-	TT	p.A1143fs
KIRP	TCGA-G7-6790-01	RPL10A	ENST00000467020.1	chr6	35436578:35436650:35436723:35437306:35437955:35438128,	35436724	35437306	35437266	35437267	Frame_Shift_Ins	-	A	p.LK90fs
KIRP	TCGA-G7-6790-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000464112.1	chr6	35436723:35436804:35437157:35437306:35437955:35438128,	35437158	35437306	35437266	35437267	Frame_Shift_Ins	-	A	p.LK90fs
KIRP	TCGA-G7-6796-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38841011:38841152:38843366:38843604:38850685:38850828,	38843367	38843604	38843585	38843585	Frame_Shift_Del	G	-	p.E2396fs
KIRP	TCGA-G7-7502-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000446142.1	chr7	95034650:95034800:95035430:95035559:95036298:95036380,	95035431	95035559	95035516	95035516	Frame_Shift_Del	G	-	p.P295fs
KIRP	TCGA-G7-7502-01	PON2	ENST00000483292.1	chr7	95034650:95034800:95035430:95035584:95036298:95036380,	95035431	95035584	95035516	95035516	Frame_Shift_Del	G	-	p.P295fs
KIRP	TCGA-G7-7502-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4,ENST00000586588.1	chr19	10250351:10250493:10250721:10251004:10251456:10251585,	10250722	10251004	10250732	10250732	Frame_Shift_Del	A	-	p.S1250fs
KIRP	TCGA-GL-6846-01	FAM20A	ENST00000592554.1,ENST00000590074.1,ENST00000226094.5,ENST00000592847.1	chr17	66538125:66538306:66538834:66538950:66539769:66539810,	66538835	66538950	66538845	66538846	Frame_Shift_Del	AA	-	p.F306fs
KIRP	TCGA-GL-7773-01	PBX1	ENST00000367897.1,ENST00000401534.1	chr1	164776778:164776914:164781226:164781386:164790773:164790820,	164781227	164781386	164781319	164781320	Frame_Shift_Ins	-	GTATA	p.H311fs
KIRP	TCGA-GL-7966-01	TCFL5	ENST00000335351.3,ENST00000217162.5	chr20	61488746:61488990:61490715:61490878:61491476:61491660,	61490716	61490878	61490803	61490806	Frame_Shift_Del	AGAA	-	p.FC302fs
KIRP	TCGA-GL-8500-01	MOCS2	ENST00000510818.2	chr5	52396282:52396364:52397188:52397339:52397926:52398054,52396240:52396364:52397188:52397339:52402906:52403007,52396240:52396317:52397188:52397339:52397926:52398054,	52397189	52397339	52397195	52397196	Frame_Shift_Ins	-	T	p.T124fs
KIRP	TCGA-GL-8500-01	COL19A1	ENST00000393344.1,ENST00000322773.4	chr6	70866207:70866261:70866561:70866615:70871791:70871845,	70866562	70866615	70866589	70866589	Frame_Shift_Del	G	-	p.G756fs
KIRP	TCGA-GL-8500-01	DLGAP5	ENST00000247191.2	chr14	55650323:55650471:55655659:55655898:55658180:55658262,	55655660	55655898	55655750	55655751	Frame_Shift_Ins	-	AT	p.DK49fs
KIRP	TCGA-GL-8500-01	TTC3	ENST00000428693.1	chr21	38563634:38563725:38567975:38568337:38569870:38569997,	38567976	38568337	38568034	38568035	Frame_Shift_Ins	-	T	p.C1759fs
KIRP	TCGA-HE-7128-01	DZIP3	ENST00000479138.1	chr3	108308580:108308686:108324181:108324285:108326935:108327005,108308901:108308943:108324181:108324285:108326935:108327005,	108324182	108324285	108324275	108324275	Frame_Shift_Del	T	-	p.F9fs
KIRP	TCGA-HE-7128-01	LIPH	ENST00000424591.2	chr3	185236931:185237097:185241858:185241948:185245271:185245373,185236931:185237097:185241858:185241948:185251358:185251448,	185241859	185241948	185241864	185241865	Frame_Shift_Del	AA	-	p.L238fs
KIRP	TCGA-HE-7130-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833175	25833175	Frame_Shift_Del	T	-	p.F222fs
KIRP	TCGA-IZ-8195-01	ZNF292	ENST00000369577.3	chr6	87926016:87926095:87928313:87928449:87943042:87943245,	87928314	87928449	87928395	87928395	Frame_Shift_Del	A	-	p.K162fs
KIRP	TCGA-IZ-8195-01	FOXK2	ENST00000473637.2,ENST00000335255.5	chr17	80541888:80542064:80543779:80544076:80544938:80545148,	80543780	80544076	80543893	80543893	Frame_Shift_Del	C	-	p.P466fs
KIRP	TCGA-IZ-8195-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
KIRP	TCGA-IZ-8196-01	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33200454:33200598:33200813:33201052:33208812:33209012,	33200814	33201052	33201013	33201013	Frame_Shift_Del	G	-	p.S503fs
KIRP	TCGA-IZ-8196-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693722	Frame_Shift_Del	T	-	p.S690fs
KIRP	TCGA-J7-6720-01	ING4	ENST00000341550.4,ENST00000437149.2,ENST00000396807.4,ENST00000469749.1,ENST00000467678.1,ENST00000412586.2,ENST00000444704.2,ENST00000488381.1,ENST00000472002.1,ENST00000446105.2	chr12	6760530:6760551:6761436:6761584:6761827:6761933,	6761437	6761584	6761549	6761549	Frame_Shift_Del	C	-	p.G178fs
KIRP	TCGA-J7-8537-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
KIRP	TCGA-J7-8537-01	TSG101	ENST00000545247.2,ENST00000251968.3	chr11	18537645:18537711:18541065:18541150:18548321:18548368,	18541066	18541150	18541141	18541142	Frame_Shift_Del	TG	-	p.YR17fs
KIRP	TCGA-MH-A55W-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000440957.2,ENST00000348417.2,ENST00000349441.2	chr3	129207099:129207240:129214288:129214450:129218744:129218911,129210983:129211037:129214288:129214450:129218744:129218911,	129214289	129214450	129214436	129214436	Frame_Shift_Del	T	-	p.M620fs
KIRP	TCGA-MH-A55W-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671659	151671659	Frame_Shift_Del	C	-	p.H613fs
KIRP	TCGA-PJ-A5Z8-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2,ENST00000451813.2	chr20	33600810:33600869:33603810:33603942:33608992:33609135,	33603811	33603942	33603843	33603844	Frame_Shift_Ins	-	AA	p.H432fs
KIRP	TCGA-A4-A6HP-01	AQP3	ENST00000473153.1	chr9	33442849:33442968:33443176:33443456:33443763:33443890,	33443177	33443456	33443353	33443354	Frame_Shift_Ins	-	A	p.F113fs
KIRP	TCGA-A4-A6HP-01	AQP3	ENST00000297991.4	chr9	33442849:33442968:33443318:33443456:33443763:33443890,	33443319	33443456	33443353	33443354	Frame_Shift_Ins	-	A	p.F113fs
KIRP	TCGA-IZ-A6M8-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44913073:44913200:44918250:44918349:44918491:44918711,	44918251	44918349	44918293	44918293	Frame_Shift_Del	T	-	p.S306fs
KIRP	TCGA-B1-A47M-01	ODF2	ENST00000393533.2,ENST00000448249.3,ENST00000604420.1,ENST00000372791.3,ENST00000546203.1,ENST00000434106.3,ENST00000444119.2,ENST00000393527.3,ENST00000372814.3,ENST00000351030.3,ENST00000372807.5	chr9	131247643:131247753:131250168:131250304:131254704:131254815,	131250169	131250304	131250301	131250301	Frame_Shift_Del	G	-	p.L511fs
KIRP	TCGA-P4-A5E8-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62193423:62193536:62194170:62194373:62199135:62199242,	62194171	62194373	62194225	62194225	Frame_Shift_Del	C	-	p.P208fs
KIRP	TCGA-P4-A5E8-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62193423:62193536:62194170:62194373:62199135:62199242,	62194171	62194373	62194216	62194223	Frame_Shift_Del	AACCAACC	-	p.205_208del
KIRP	TCGA-P4-A5E8-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62193423:62193536:62194170:62194373:62199135:62199242,	62194171	62194373	62194216	62194225	Frame_Shift_Del	AACCAACCTC	-	p.205_208del
KIRP	TCGA-Q2-A5QZ-01	PHB	ENST00000504124.1,ENST00000434917.2,ENST00000511832.1,ENST00000300408.3,ENST00000512041.2,ENST00000393345.4,ENST00000446735.1,ENST00000419140.2	chr17	47486810:47486835:47489039:47489201:47490538:47490615,	47489040	47489201	47489082	47489082	Frame_Shift_Del	G	-	p.R70fs
KIRP	TCGA-Q2-A5QZ-01	CIZ1	ENST00000415526.1,ENST00000325721.8	chr9	130942999:130943078:130947825:130948055:130950141:130950213,130942999:130943078:130947825:130948055:130952607:130952635,	130947826	130948055	130947865	130947865	Frame_Shift_Del	T	-	p.Q184fs
KIRP	TCGA-AT-A5NU-01	OPTN	ENST00000424614.1,ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000263036.5	chr10	13158267:13158340:13160887:13161040:13164384:13164487,	13160888	13161040	13160980	13160981	Frame_Shift_Ins	-	AAGGG	p.L240fs
KIRP	TCGA-AT-A5NU-01	OPTN	ENST00000378764.2,ENST00000378752.3	chr10	13158267:13158340:13160905:13161040:13164384:13164487,	13160906	13161040	13160980	13160981	Frame_Shift_Ins	-	AAGGG	p.L240fs
KIRP	TCGA-AT-A5NU-01	ASAH1	ENST00000520781.1,ENST00000381733.4,ENST00000314146.10,ENST00000417108.2,ENST00000262097.6	chr8	17916343:17916400:17916849:17916973:17917080:17917212,	17916850	17916973	17916973	17916973	Frame_Shift_Del	T	-	p.L307fs
KIRP	TCGA-MH-A560-01	HNF4A	ENST00000316673.4,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000316099.4	chr20	43048360:43048516:43052657:43052894:43056974:43057097,	43052658	43052894	43052875	43052876	Frame_Shift_Ins	-	C	p.L363fs
KIRP	TCGA-A4-A57E-01	ANKRD18A	ENST00000399703.5,ENST00000602295.1	chr9	38588547:38588660:38593756:38593906:38595482:38595506,	38593757	38593906	38593854	38593855	Frame_Shift_Ins	-	AAAA	p.S636fs
KIRP	TCGA-A4-A5XZ-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4,ENST00000453771.1	chr1	203786053:203786252:203787697:203787817:203797426:203797550,	203787698	203787817	203787783	203787786	Frame_Shift_Del	GACA	-	p.47_48del
KIRP	TCGA-A4-A5DU-01	DISC1	ENST00000366633.3,ENST00000366632.2,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000422590.2,ENST00000602713.1,ENST00000602822.1,ENST00000366637.3	chr1	231906580:231906816:231930987:231931042:231935853:231935956,	231930988	231931042	231931003	231931003	Frame_Shift_Del	A	-	p.I428fs
KIRP	TCGA-IZ-A6M9-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76393528:76393671:76395312:76395745:76397700:76398009,	76395313	76395745	76395479	76395497	Frame_Shift_Del	AAAGAAGATTCTACCACTT	-	p.509_515del
KIRP	TCGA-A4-A5Y1-01	FGGY	ENST00000495718.1,ENST00000371218.4,ENST00000371212.1,ENST00000303721.7,ENST00000485720.1,ENST00000430447.1,ENST00000475949.1,ENST00000474476.1	chr1	59977987:59978111:60019795:60019899:60073474:60073582,	60019796	60019899	60019871	60019884	Frame_Shift_Del	TCTGTGGAACGTCT	-	p.204_208del
KIRP	TCGA-HE-A5NI-01	RNF34	ENST00000392464.2,ENST00000361234.5,ENST00000392465.3	chr12	121853961:121854180:121855306:121855714:121858044:121858137,	121855307	121855714	121855373	121855374	Frame_Shift_Del	AG	-	p.97_98del
KIRP	TCGA-HE-A5NI-01	CLK1	ENST00000409403.2	chr2	201719338:201719418:201721404:201721534:201721613:201721708,	201721405	201721534	201721517	201721517	Frame_Shift_Del	G	-	p.L316X
KIRP	TCGA-HE-A5NI-01	GDAP1	ENST00000522568.1,ENST00000521096.1,ENST00000434412.2,ENST00000220822.7,ENST00000520797.1	chr8	75272371:75272545:75274118:75274213:75275173:75275288,	75274119	75274213	75274164	75274164	Frame_Shift_Del	A	-	p.E109fs
KIRP	TCGA-B1-A654-01	BARD1	ENST00000260947.4,ENST00000421162.1,ENST00000449967.2,ENST00000455743.1	chr2	215609790:215609883:215610445:215610578:215617170:215617202,	215610446	215610578	215610468	215610468	Frame_Shift_Del	T	-	p.Y597fs
KIRP	TCGA-A4-A4ZT-01	SPOCD1	ENST00000533231.1,ENST00000360482.2,ENST00000528791.1,ENST00000257100.3	chr1	32265616:32265742:32266041:32266218:32267264:32267303,	32266042	32266218	32266188	32266191	Frame_Shift_Del	CCAG	-	p.485_486del
KIRP	TCGA-GL-A59R-01	RELA	ENST00000529389.1,ENST00000406246.3,ENST00000532999.1,ENST00000531484.1,ENST00000308639.9,ENST00000525693.1	chr11	65423327:65423406:65425757:65425970:65426188:65426293,	65425758	65425970	65425828	65425840	Frame_Shift_Del	GGAGACACGCACA	-	p.263_267del
KIRP	TCGA-B9-4114-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831767	2831768	Frame_Shift_Ins	-	C	p.V435fs
KIRP	TCGA-BQ-7060-01	MAPK8IP3	ENST00000356010.5,ENST00000250894.4	chr16	1817564:1817736:1817805:1817919:1818069:1818108,	1817806	1817919	1817800	1817807	Frame_Shift_Del	CCACAGGC	-	p.1136_1136del
KIRP	TCGA-BQ-7060-01	MAPK8IP3	ENST00000564868.1	chr16	1817564:1817736:1817805:1818108:1818199:1818379,	1817806	1818108	1817800	1817807	Frame_Shift_Del	CCACAGGC	-	p.1136_1136del
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000467306.1	chr1	151734851:151734976:151735425:151735622:151735802:151735810,	151735426	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.54_58del
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000486707.1	chr1	151734851:151734976:151735430:151735622:151735802:151735810,	151735431	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.54_58del
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000368829.3,ENST00000481777.1,ENST00000461182.1,ENST00000478926.1	chr1	151734851:151734976:151735465:151735622:151735802:151735810,	151735466	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.54_58del
KIRP	TCGA-BQ-5877-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541250	187541250	Frame_Shift_Del	A	-	p.F2164fs
KIRP	TCGA-IZ-8196-01	ATP8B2	ENST00000368489.3	chr1	154313329:154313538:154314955:154314999:154315271:154315437,	154314956	154314999	154314963	154314972	Frame_Shift_Del	GTTTGACGTC	-	p.450_453del
KIRP	TCGA-G7-7502-01	TMED1	ENST00000589638.1	chr19	10943726:10943889:10945609:10945739:10945931:10946029,	10945610	10945739	10945675	10945687	Frame_Shift_Del	CCTCCTCGTCATC	-	p.130_134del
KIRP	TCGA-G7-7502-01	TMED1	ENST00000588259.1	chr19	10943726:10943889:10945609:10945793:10945931:10946029,10943726:10943889:10945609:10945793:10946684:10946877,	10945610	10945793	10945675	10945687	Frame_Shift_Del	CCTCCTCGTCATC	-	p.130_134del
KIRP	TCGA-IZ-8195-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743293	130743300	Frame_Shift_Del	TTCTCGAT	-	p.284_287del
KIRP	TCGA-DW-7841-01	SUSD1	ENST00000374264.2,ENST00000374270.3	chr9	114804146:114804240:114820707:114820966:114825216:114825313,114814678:114814718:114820707:114820966:114825216:114825313,	114820708	114820966	114820890	114820890	Frame_Shift_Del	A	-	p.F643fs
KIRP	TCGA-BQ-5875-01	MCTS1	ENST00000371317.5	chrX	119737834:119738102:119739261:119739414:119739933:119739991,	119739262	119739414	119739295	119739296	Frame_Shift_Del	CC	-	p.16_16del
KIRP	TCGA-BQ-5876-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125642	47125643	Frame_Shift_Ins	-	A	p.L1876fs
KIRP	TCGA-A4-A48D-01	MRPL21	ENST00000565125.1,ENST00000541279.1	chr11	68660436:68660461:68660789:68660923:68663982:68664146,	68660790	68660923	68660882	68660883	Frame_Shift_Ins	-	T	p.K146fs
KIRP	TCGA-A4-A48D-01	MRPL21	ENST00000362034.2,ENST00000567045.1,ENST00000450904.2,ENST00000544567.1	chr11	68660436:68660461:68660870:68660923:68663982:68664146,	68660871	68660923	68660882	68660883	Frame_Shift_Ins	-	T	p.K146fs
KIRP	TCGA-A4-A4ZT-01	UBA6	ENST00000322244.5,ENST00000420827.2,ENST00000429659.3	chr4	68534268:68534392:68536187:68536310:68539414:68539495,	68536188	68536310	68536261	68536262	Frame_Shift_Ins	-	TT	p.F199fs
KIRP	TCGA-A4-A4ZT-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832051	61832054	Frame_Shift_Del	TTGT	-	p.N2862fs
KIRP	TCGA-A4-A4ZT-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832057	61832061	Frame_Shift_Del	GTGGC	-	p.A2860fs
KIRP	TCGA-A4-A4ZT-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10425157:10425303:10425466:10425706:10428524:10428560,	10425467	10425706	10425476	10425477	Frame_Shift_Ins	-	C	p.T1508fs
KIRP	TCGA-A4-A4ZT-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53500969:53501081:53503827:53504097:53504294:53504575,	53503828	53504097	53504046	53504047	Frame_Shift_Ins	-	C	p.T732fs
KIRP	TCGA-A4-A57E-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1271547	1271547	Frame_Shift_Del	A	-	p.P4479fs
KIRP	TCGA-A4-A57E-01	KIF1A	ENST00000320389.7,ENST00000492812.1,ENST00000498729.2,ENST00000460788.1	chr2	241657466:241657585:241658422:241658615:241659190:241659343,	241658423	241658615	241658528	241658528	Frame_Shift_Del	G	-	p.P1703fs
KIRP	TCGA-A4-A5XZ-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4,ENST00000453771.1	chr1	203786053:203786252:203787697:203787817:203797426:203797550,	203787698	203787817	203787783	203787786	Frame_Shift_Del	GACA	-	p.R47fs
KIRP	TCGA-A4-A5XZ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106686	168106687	Frame_Shift_Del	CT	-	p.S2928fs
KIRP	TCGA-A4-A5XZ-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971551	52971551	Frame_Shift_Del	G	-	p.P279fs
KIRP	TCGA-A4-A5Y1-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098859	47098859	Frame_Shift_Del	G	-	p.Q2206fs
KIRP	TCGA-A4-A6HP-01	RNPEP	ENST00000478617.1,ENST00000295640.4,ENST00000447312.1,ENST00000481780.1	chr1	201958031:201958172:201958510:201958659:201965274:201965391,	201958511	201958659	201958580	201958590	Frame_Shift_Del	TTCCAGATGTG	-	p.F220fs
KIRP	TCGA-B1-A47N-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
KIRP	TCGA-B1-A656-01	AFF4	ENST00000265343.5	chr5	132223788:132223852:132224770:132224865:132227855:132228096,	132224771	132224865	132224787	132224791	Frame_Shift_Del	GCTTT	-	p.T904fs
KIRP	TCGA-B1-A657-01	PNPLA8	ENST00000476592.1	chr7	108142934:108143086:108154587:108154737:108166472:108166515,	108154588	108154737	108154603	108154603	Frame_Shift_Del	T	-	p.K397fs
KIRP	TCGA-B1-A657-01	CHCHD3	ENST00000423635.1,ENST00000466644.1,ENST00000496427.1,ENST00000262570.5	chr7	132523158:132523229:132570421:132570505:132659928:132660046,	132570422	132570505	132570441	132570442	Frame_Shift_Ins	-	G	p.L150fs
KIRP	TCGA-B1-A657-01	SIRT4	ENST00000202967.4	chr12	120741682:120741861:120750258:120750553:120750686:120751044,	120750259	120750553	120750516	120750517	Frame_Shift_Del	AA	-	p.E252fs
KIRP	TCGA-B1-A657-01	SIRT4	ENST00000537892.1	chr12	120741682:120741861:120750386:120750553:120750686:120751044,	120750387	120750553	120750516	120750517	Frame_Shift_Del	AA	-	p.E252fs
KIRP	TCGA-B9-A44B-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579041	82579041	Frame_Shift_Del	T	-	p.K3621fs
KIRP	TCGA-B9-A44B-01	FUT10	ENST00000327671.5,ENST00000524021.1,ENST00000518672.1	chr8	33230161:33230322:33246480:33247316:33310733:33311028,	33246481	33247316	33246682	33246683	Frame_Shift_Ins	-	A	p.I387fs
KIRP	TCGA-B9-A44B-01	KCNH3	ENST00000257981.6,ENST00000548675.1	chr12	49950152:49950259:49950965:49951042:49951136:49951420,	49950966	49951042	49951017	49951018	Frame_Shift_Del	AC	-	p.D876fs
KIRP	TCGA-B9-A44B-01	EPS15L1	ENST00000602022.1,ENST00000597559.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000535753.2	chr19	16547747:16547810:16548580:16548676:16551672:16551720,	16548581	16548676	16548668	16548669	Frame_Shift_Del	AT	-	p.Y74fs
KIRP	TCGA-B9-A5W7-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65900817:65900956:65905697:65905877:65906992:65909303,	65905698	65905877	65905759	65905759	Frame_Shift_Del	A	-	p.P958fs
KIRP	TCGA-DW-7963-01	OBSCN	ENST00000366709.4,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228437665:228437941:228444351:228444627:228451816:228452092,	228444352	228444627	228444409	228444410	Frame_Shift_Ins	-	G	p.A1456fs
KIRP	TCGA-DW-7963-01	F12	ENST00000253496.3	chr5	176832735:176832806:176832962:176833062:176836046:176836104,	176832963	176833062	176833055	176833058	Frame_Shift_Del	AGTG	-	p.L40fs
KIRP	TCGA-G7-A4TM-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876672	27876673	Frame_Shift_Del	GT	-	p.T652fs
KIRP	TCGA-GL-A4EM-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48025884	48025885	Frame_Shift_Ins	-	G	p.S254fs
KIRP	TCGA-GL-A4EM-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48025884	48025885	Frame_Shift_Ins	-	G	p.S254fs
KIRP	TCGA-GL-A4EM-01	UNC80	ENST00000539183.1,ENST00000439458.1,ENST00000333907.3,ENST00000272845.6,ENST00000477924.1	chr2	210837787:210837994:210840842:210841027:210841636:210841802,	210840843	210841027	210841021	210841021	Frame_Shift_Del	G	-	p.Q2856fs
KIRP	TCGA-GL-A4EM-01	MUC6	ENST00000421673.2	chr11	1018035:1018770:1019274:1019496:1020089:1020257,	1019275	1019496	1019461	1019462	Frame_Shift_Ins	-	T	p.Q1281fs
KIRP	TCGA-GL-A4EM-01	SLC24A5	ENST00000341459.3,ENST00000449382.2	chr15	48428967:48429160:48431165:48431372:48433309:48433411,	48431166	48431372	48431306	48431306	Frame_Shift_Del	T	-	p.F338fs
KIRP	TCGA-GL-A4EM-01	CLTC	ENST00000579456.1,ENST00000269122.3,ENST00000393043.1	chr17	57759678:57759789:57759989:57760154:57760267:57760375,	57759990	57760154	57760151	57760152	Frame_Shift_Del	AG	-	p.K1258fs
KIRP	TCGA-GL-A4EM-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1	chrX	123185164:123185244:123189977:123190085:123191715:123191827,	123189978	123190085	123190070	123190070	Frame_Shift_Del	A	-	p.E430fs
KIRP	TCGA-GL-A59R-01	TRAF3IP2	ENST00000532708.1,ENST00000392556.4,ENST00000340026.6	chr6	111901399:111901592:111912460:111913297:111926978:111927073,111901399:111901592:111912460:111913297:111922398:111922509,	111912461	111913297	111912891	111912891	Frame_Shift_Del	A	-	p.F133fs
KIRP	TCGA-GL-A59R-01	RELA	ENST00000529389.1,ENST00000406246.3,ENST00000532999.1,ENST00000531484.1,ENST00000308639.9,ENST00000525693.1	chr11	65423327:65423406:65425757:65425970:65426188:65426293,	65425758	65425970	65425828	65425840	Frame_Shift_Del	GGAGACACGCACA	-	p.P276fs
KIRP	TCGA-GL-A59T-01	NUMA1	ENST00000393695.3,ENST00000537930.1,ENST00000534987.1,ENST00000540843.1,ENST00000351960.6,ENST00000358965.6,ENST00000543009.1,ENST00000535947.1,ENST00000543937.1,ENST00000537217.1,ENST00000544238.1,ENST00000544129.1,ENST00000536119.1,ENST00000542977.1	chr11	71732271:71732337:71733384:71733465:71734110:71734193,	71733385	71733465	71733436	71733436	Frame_Shift_Del	G	-	p.T107fs
KIRP	TCGA-GL-A59T-01	PARD6A	ENST00000458121.2	chr16	67694861:67695004:67695357:67695580:67695798:67696633,	67695358	67695580	67695546	67695547	Frame_Shift_Ins	-	C	p.G84fs
KIRP	TCGA-HE-A5NF-01	ARHGEF4	ENST00000532720.1,ENST00000525839.1,ENST00000355771.3,ENST00000409303.1,ENST00000490728.1,ENST00000326016.5,ENST00000392953.3	chr2	131799387:131799517:131801024:131801156:131801871:131802115,	131801025	131801156	131801154	131801154	Frame_Shift_Del	A	-	p.K533fs
KIRP	TCGA-HE-A5NF-01	CTNNA1	ENST00000517980.1,ENST00000523912.1,ENST00000518825.1,ENST00000520158.1,ENST00000519113.1,ENST00000522227.1,ENST00000302763.7	chr5	138117611:138117718:138118865:138119061:138145726:138145778,	138118866	138119061	138118896	138118897	Frame_Shift_Del	GG	-	p.G46fs
KIRP	TCGA-HE-A5NF-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75516201	75516205	Frame_Shift_Del	TGAAC	-	p.V52fs
KIRP	TCGA-HE-A5NI-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12049221:12049400:12052611:12052747:12056212:12056375,	12052612	12052747	12052666	12052667	Frame_Shift_Del	AC	-	p.D77fs
KIRP	TCGA-HE-A5NI-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284805	63284806	Frame_Shift_Ins	-	A	p.T175fs
KIRP	TCGA-HE-A5NI-01	CLK1	ENST00000409403.2	chr2	201719338:201719418:201721404:201721534:201721613:201721708,	201721405	201721534	201721517	201721517	Frame_Shift_Del	G	-	p.T315fs
KIRP	TCGA-HE-A5NI-01	PTGR1	ENST00000466771.1,ENST00000238248.3,ENST00000374324.1	chr9	114325246:114325511:114332370:114332489:114337013:114337118,114326518:114326542:114332370:114332489:114337013:114337118,	114332371	114332489	114332439	114332439	Frame_Shift_Del	C	-	p.V271fs
KIRP	TCGA-HE-A5NI-01	C2CD3	ENST00000538625.1,ENST00000334126.7	chr11	73744874:73745323:73748522:73748743:73753098:73753205,	73748523	73748743	73748552	73748561	Frame_Shift_Del	AGGTTACTGG	-	p.S1948fs
KIRP	TCGA-HE-A5NI-01	C2CD3	ENST00000442398.2	chr11	73744874:73745323:73748522:73748697:73753098:73753263,	73748523	73748697	73748552	73748561	Frame_Shift_Del	AGGTTACTGG	-	p.S1948fs
KIRP	TCGA-HE-A5NI-01	GALNT6	ENST00000543196.2,ENST00000603641.1,ENST00000603680.1,ENST00000356317.3	chr12	51751132:51751234:51751913:51752045:51752915:51753067,	51751914	51752045	51751976	51751982	Frame_Shift_Del	ACCAGGA	-	p.S478fs
KIRP	TCGA-HE-A5NI-01	RNF34	ENST00000392464.2,ENST00000361234.5,ENST00000392465.3	chr12	121853961:121854180:121855306:121855714:121858044:121858137,	121855307	121855714	121855373	121855374	Frame_Shift_Del	AG	-	p.R99fs
KIRP	TCGA-HE-A5NK-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156514180:156514264:156517864:156518035:156518139:156518276,	156517865	156518035	156517916	156517917	Frame_Shift_Del	AG	-	p.A751fs
KIRP	TCGA-HE-A5NK-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132105	51132106	Frame_Shift_Del	CT	-	p.E109fs
KIRP	TCGA-HE-A5NL-01	TTL	ENST00000233336.6,ENST00000476615.1	chr2	113258862:113258918:113260488:113260758:113277858:113278002,	113260489	113260758	113260589	113260589	Frame_Shift_Del	A	-	p.K236fs
KIRP	TCGA-HE-A5NL-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25806162:25806374:25819759:25819900:25821429:25821562,	25819760	25819900	25819805	25819806	Frame_Shift_Ins	-	T	p.K506fs
KIRP	TCGA-HE-A5NL-01	SLC25A40	ENST00000446236.1,ENST00000429674.1,ENST00000341119.5,ENST00000496348.1	chr7	87465611:87465676:87466044:87466125:87470947:87471029,	87466045	87466125	87466048	87466048	Frame_Shift_Del	A	-	p.S301fs
KIRP	TCGA-IA-A40U-01	LRRC37A	ENST00000393465.3,ENST00000320254.5,ENST00000496930.1	chr17	44407815:44409347:44409917:44410022:44412910:44412960,	44409918	44410022	44410017	44410018	Frame_Shift_Ins	-	T	p.I1602fs
KIRP	TCGA-IZ-A6M8-01	MEFV	ENST00000537682.1,ENST00000538326.1	chr16	3299430:3299780:3304157:3304790:3306310:3306587,	3304158	3304790	3304171	3304171	Frame_Shift_Del	T	-	p.E299fs
KIRP	TCGA-IZ-A6M9-01	VPS11	ENST00000531528.2,ENST00000527798.1,ENST00000300793.6,ENST00000529838.2	chr11	118949891:118950010:118951801:118952024:118952168:118952674,	118951802	118952024	118952015	118952015	Frame_Shift_Del	C	-	p.F882fs
KIRP	TCGA-IZ-A6M9-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76393528:76393671:76395312:76395745:76397700:76398009,	76395313	76395745	76395479	76395497	Frame_Shift_Del	AAAGAAGATTCTACCACTT	-	p.K792fs
KIRP	TCGA-IZ-A6M9-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58590765:58590897:58592376:58592578:58594115:58594266,	58592377	58592578	58592566	58592570	Frame_Shift_Del	CAAGA	-	p.P713fs
KIRP	TCGA-KV-A6GE-01	IL17RB	ENST00000475124.1,ENST00000288167.3	chr3	53886897:53887024:53889320:53889368:53890870:53891004,	53889321	53889368	53889347	53889347	Frame_Shift_Del	A	-	p.K170fs
KIRP	TCGA-KV-A6GE-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13620991	13620992	Frame_Shift_Ins	-	A	p.Q236fs
KIRP	TCGA-KV-A6GE-01	FLNC	ENST00000325888.8,ENST00000346177.6	chr7	128483461:128483631:128483849:128483967:128484057:128484320,	128483850	128483967	128483884	128483885	Frame_Shift_Ins	-	G	p.D949fs
KIRP	TCGA-MH-A55W-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380179	109380179	Frame_Shift_Del	A	-	p.N1062fs
KIRP	TCGA-MH-A55W-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000440957.2,ENST00000348417.2,ENST00000349441.2	chr3	129207099:129207240:129214288:129214450:129218744:129218911,129210983:129211037:129214288:129214450:129218744:129218911,	129214289	129214450	129214436	129214436	Frame_Shift_Del	T	-	p.F783fs
KIRP	TCGA-MH-A560-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64867921	64867921	Frame_Shift_Del	C	-	p.F259fs
KIRP	TCGA-MH-A560-01	GBF1	ENST00000369983.3	chr10	104123012:104123153:104123466:104123555:104125153:104125356,	104123467	104123555	104123472	104123472	Frame_Shift_Del	A	-	p.K674fs
KIRP	TCGA-MH-A561-01	CEP350	ENST00000367607.3,ENST00000357434.2	chr1	179956377:179956421:179959641:179959756:179961196:179961356,	179959642	179959756	179959644	179959645	Frame_Shift_Del	GA	-	p.L41fs
KIRP	TCGA-MH-A561-01	PTPN3	ENST00000262539.3	chr9	112216775:112216854:112219452:112219495:112219571:112219679,112211090:112211135:112219452:112219495:112219571:112219679,	112219453	112219495	112219466	112219466	Frame_Shift_Del	C	-	p.R92fs
KIRP	TCGA-MH-A561-01	CDH24	ENST00000397359.3,ENST00000485922.1,ENST00000487137.2	chr14	23516278:23516583:23516669:23517688:23518235:23518484,	23516670	23517688	23517629	23517629	Frame_Shift_Del	C	-	p.E674fs
KIRP	TCGA-MH-A561-01	PDCD5	ENST00000590247.2,ENST00000586035.1,ENST00000221784.4,ENST00000586316.1	chr19	33075863:33075917:33077763:33077835:33078158:33078203,33076721:33076813:33077763:33077835:33078158:33078203,	33077764	33077835	33077794	33077794	Frame_Shift_Del	A	-	p.K97fs
KIRP	TCGA-MH-A562-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836607	82836608	Frame_Shift_Del	AG	-	p.T2595fs
KIRP	TCGA-MH-A562-01	EZH1	ENST00000592743.1,ENST00000586089.1	chr17	40879679:40879781:40880842:40880970:40882845:40882936,40879679:40879781:40880842:40880970:40897028:40897033,	40880843	40880970	40880917	40880920	Frame_Shift_Del	AGTA	-	p.Y20fs
KIRP	TCGA-P4-A5E7-01	SIRT6	ENST00000601488.1,ENST00000594279.1	chr19	4174874:4174943:4175024:4175108:4175676:4175757,	4175025	4175108	4175089	4175090	Frame_Shift_Ins	-	G	p.L225fs
KIRP	TCGA-P4-A5E7-01	SIRT6	ENST00000305232.6,ENST00000599365.1	chr19	4174874:4174943:4175024:4175148:4175676:4175757,4174874:4174943:4175024:4175148:4175838:4175934,	4175025	4175148	4175089	4175090	Frame_Shift_Ins	-	G	p.L225fs
KIRP	TCGA-P4-A5E7-01	SIRT6	ENST00000600540.1	chr19	4174874:4174943:4175024:4175757:4175838:4175934,	4175025	4175757	4175089	4175090	Frame_Shift_Ins	-	G	p.L225fs
KIRP	TCGA-P4-A5E8-01	TEKT4	ENST00000468063.1,ENST00000295201.4	chr2	95539264:95539335:95539709:95539853:95540520:95540743,	95539710	95539853	95539829	95539830	Frame_Shift_Ins	-	G	p.P230fs
KIRP	TCGA-P4-A5E8-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986201	36986204	Frame_Shift_Del	AAAG	-	p.T973fs
KIRP	TCGA-P4-A5E8-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832228	24832229	Frame_Shift_Del	AG	-	p.T1343fs
KIRP	TCGA-P4-A5E8-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62193423:62193536:62194170:62194373:62199135:62199242,	62194171	62194373	62194216	62194223	Frame_Shift_Del	AACCAACC	-	p.N206fs
KIRP	TCGA-P4-A5E8-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62193423:62193536:62194170:62194373:62199135:62199242,	62194171	62194373	62194225	62194225	Frame_Shift_Del	C	-	p.Q209fs
KIRP	TCGA-P4-A5EA-01	PHTF1	ENST00000369600.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000369596.2	chr1	114254561:114254735:114255900:114256060:114269039:114269080,114254561:114254735:114255900:114256060:114267380:114267515,	114255901	114256060	114255942	114255943	Frame_Shift_Del	TT	-	p.T247fs
KIRP	TCGA-P4-A5EA-01	TTL	ENST00000233336.6,ENST00000476615.1	chr2	113258862:113258918:113260488:113260758:113277858:113278002,	113260489	113260758	113260608	113260609	Frame_Shift_Del	AT	-	p.N242fs
KIRP	TCGA-P4-A5EA-01	FARP2	ENST00000412332.1	chr2	242432807:242432859:242433422:242433556:242433891:242434255,	242433423	242433556	242433486	242433487	Frame_Shift_Ins	-	G	p.D1037fs
KIRP	TCGA-P4-A5EA-01	MTA2	ENST00000524902.1,ENST00000278823.2,ENST00000527204.1	chr11	62363929:62364004:62364108:62364297:62364787:62364885,	62364109	62364297	62364175	62364176	Frame_Shift_Del	CT	-	p.E272fs
KIRP	TCGA-P4-A5EA-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40740554:40740725:40742210:40742311:40745340:40745535,	40742211	40742311	40742254	40742254	Frame_Shift_Del	G	-	p.E2108fs
KIRP	TCGA-P4-A5EA-01	SOAT2	ENST00000301466.3,ENST00000542365.1	chr12	53498890:53499027:53499344:53499404:53499690:53499798,	53499345	53499404	53499371	53499372	Frame_Shift_Del	AG	-	p.Q101fs
KIRP	TCGA-P4-A5EA-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251281	81251284	Frame_Shift_Del	CTTA	-	p.F722fs
KIRP	TCGA-P4-A5EA-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232036	71232037	Frame_Shift_Del	CA	-	p.Q139fs
KIRP	TCGA-P4-A5EB-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547875	35547875	Frame_Shift_Del	G	-	p.V453fs
KIRP	TCGA-PJ-A5Z8-01	KDM1B	ENST00000388870.2,ENST00000297792.5,ENST00000397244.1,ENST00000546309.2,ENST00000449850.1	chr6	18215237:18215360:18217963:18218116:18222139:18222274,	18217964	18218116	18218101	18218101	Frame_Shift_Del	C	-	p.V587fs
KIRP	TCGA-PJ-A5Z8-01	LAMB1	ENST00000476039.1,ENST00000393561.1,ENST00000222399.6	chr7	107591670:107591767:107592453:107592668:107593974:107594094,	107592454	107592668	107592551	107592555	Frame_Shift_Del	TCACA	-	p.C1089fs
KIRP	TCGA-PJ-A5Z8-01	CTRB1	ENST00000361017.4,ENST00000495583.1	chr16	75256866:75256946:75257038:75257117:75257345:75257505,	75257039	75257117	75257061	75257061	Frame_Shift_Del	G	-	p.G87fs
KIRP	TCGA-PJ-A5Z8-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2,ENST00000451813.2	chr20	33600810:33600869:33603810:33603942:33608992:33609135,	33603811	33603942	33603843	33603844	Frame_Shift_Ins	-	AA	p.L439fs
KIRP	TCGA-PJ-A5Z9-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351684	134351685	Frame_Shift_Ins	-	G	p.R1390fs
KIRP	TCGA-PJ-A5Z9-01	SREBF2	ENST00000361204.4,ENST00000424354.1	chr22	42280845:42281015:42289120:42289289:42290823:42290941,	42289121	42289289	42289217	42289217	Frame_Shift_Del	T	-	p.F769fs
KIRP	TCGA-Q2-A5QZ-01	CIZ1	ENST00000415526.1,ENST00000325721.8	chr9	130942999:130943078:130947825:130948055:130950141:130950213,130942999:130943078:130947825:130948055:130952607:130952635,	130947826	130948055	130947865	130947865	Frame_Shift_Del	T	-	p.K213fs
KIRP	TCGA-Q2-A5QZ-01	DLAT	ENST00000533297.1,ENST00000280346.6	chr11	111899515:111899669:111904127:111904254:111907996:111908184,	111904128	111904254	111904183	111904183	Frame_Shift_Del	A	-	p.E239fs
KIRP	TCGA-A4-7287-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730588	37730589	Frame_Shift_Ins	-	G	p.P577fs
KIRP	TCGA-A4-7288-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679712	21679713	Frame_Shift_Del	AT	-	p.N230fs
KIRP	TCGA-A4-7288-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679712	21679713	Frame_Shift_Del	AT	-	p.N230fs
KIRP	TCGA-A4-7583-01	HDGF	ENST00000495212.1	chr1	156713954:156714140:156714799:156715165:156721134:156721288,	156714800	156715165	156715103	156715104	Frame_Shift_Ins	-	A	p.F50fs
KIRP	TCGA-A4-7732-01	SEC23A	ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39511989:39512076:39514366:39514528:39517855:39517933,	39514367	39514528	39514526	39514526	Frame_Shift_Del	A	-	p.F580fs
KIRP	TCGA-A4-7732-01	SYP	ENST00000479808.1,ENST00000263233.4	chrX	49049728:49049920:49050622:49050818:49055426:49055492,49049728:49049920:49050622:49050818:49054173:49054298,	49050623	49050818	49050637	49050638	Frame_Shift_Del	TG	-	p.N136fs
KIRP	TCGA-A4-7996-01	CYP21A2	ENST00000435122.2,ENST00000479074.1,ENST00000483041.1,ENST00000418967.2,ENST00000479730.1	chr6	32007541:32007612:32007781:32007982:32008182:32008361,	32007782	32007982	32007842	32007846	Frame_Shift_Del	CAGCC	-	p.Q267fs
KIRP	TCGA-A4-8098-01	NCOA2	ENST00000518363.2,ENST00000267974.4,ENST00000452400.2,ENST00000518287.2	chr8	71036922:71037100:71039047:71039282:71040667:71040745,	71039048	71039282	71039066	71039067	Frame_Shift_Ins	-	AAAC	p.F1299fs
KIRP	TCGA-A4-8098-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000564155.1,ENST00000393512.3	chr16	71766287:71767062:71768511:71768610:71772844:71773005,	71768512	71768610	71768532	71768533	Frame_Shift_Ins	-	A	p.I782fs
KIRP	TCGA-A4-8098-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123210181:123210321:123211806:123211908:123215229:123215378,	123211807	123211908	123211859	123211862	Frame_Shift_Del	AGAT	-	p.Q909fs
KIRP	TCGA-A4-8312-01	BICD1	ENST00000281474.5	chr12	32490432:32490640:32491719:32491913:32520603:32520679,32490432:32490750:32491719:32491913:32520603:32520679,	32491720	32491913	32491723	32491724	Frame_Shift_Del	AT	-	p.Q858fs
KIRP	TCGA-A4-8515-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618807	618807	Frame_Shift_Del	G	-	p.P584fs
KIRP	TCGA-A4-8515-01	PUS3	ENST00000534158.1	chr11	125765564:125765684:125765801:125766225:125773064:125773116,	125765802	125766225	125765906	125765922	Frame_Shift_Del	TCTCTTCAATGGTATTA	-	p.N86fs
KIRP	TCGA-A4-8515-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000564155.1,ENST00000393512.3	chr16	71766287:71767062:71768511:71768610:71772844:71773005,	71768512	71768610	71768532	71768533	Frame_Shift_Ins	-	A	p.I782fs
KIRP	TCGA-A4-8517-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32466287:32466439:32467759:32467930:32472972:32473063,	32467760	32467930	32467853	32467868	Frame_Shift_Del	AGGTGGCAATCAGAAT	-	p.I693fs
KIRP	TCGA-A4-8518-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
KIRP	TCGA-AL-3468-01	POLDIP3	ENST00000451060.2	chr22	42995703:42995799:42997975:42998113:42998775:42998972,	42997976	42998113	42998037	42998037	Frame_Shift_Del	G	-	p.P176fs
KIRP	TCGA-AL-3468-01	POLDIP3	ENST00000445215.1,ENST00000252115.5,ENST00000491021.1	chr22	42995703:42995799:42997975:42998062:42998775:42998972,	42997976	42998062	42998037	42998037	Frame_Shift_Del	G	-	p.P176fs
KIRP	TCGA-AL-3472-01	BIRC6	ENST00000421745.2	chr2	32658717:32658872:32660563:32660653:32661120:32661252,	32660564	32660653	32660618	32660618	Frame_Shift_Del	A	-	p.E1155fs
KIRP	TCGA-AL-3473-01	ZXDC	ENST00000389709.3	chr3	126160607:126160789:126178495:126178580:126180377:126181063,	126178496	126178580	126178522	126178522	Frame_Shift_Del	T	-	p.K729fs
KIRP	TCGA-B3-3926-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132122	51132129	Frame_Shift_Del	CTAGACTT	-	p.R101fs
KIRP	TCGA-B3-4103-01	CD300A	ENST00000582319.1	chr17	72462814:72462882:72469674:72470013:72470670:72470824,	72469675	72470013	72469708	72469709	Frame_Shift_Ins	-	G	p.A25fs
KIRP	TCGA-B3-4104-01	CD300A	ENST00000582319.1	chr17	72462814:72462882:72469674:72470013:72470670:72470824,	72469675	72470013	72469708	72469709	Frame_Shift_Ins	-	G	p.A25fs
KIRP	TCGA-B3-4104-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182564	59182565	Frame_Shift_Del	CT	-	p.E665fs
KIRP	TCGA-B3-8121-01	GIT2	ENST00000360185.4,ENST00000551209.1	chr12	110376969:110377052:110385060:110385309:110390896:110391039,110376969:110377052:110385060:110385309:110388971:110389121,110383064:110383154:110385060:110385309:110388971:110389121,110383064:110383154:110385060:110385309:110390896:110391039,	110385061	110385309	110385121	110385127	Frame_Shift_Del	TGGGAGA	-	p.Y525fs
KIRP	TCGA-B3-8121-01	GIT2	ENST00000549999.1	chr12	110376969:110377052:110385060:110386651:110388971:110389121,	110385061	110386651	110385121	110385127	Frame_Shift_Del	TGGGAGA	-	p.Y525fs
KIRP	TCGA-B3-8121-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
KIRP	TCGA-B9-4115-01	CTBP1	ENST00000506180.1	chr4	1221986:1222131:1231970:1232125:1242703:1242764,1221986:1222131:1231970:1232125:1235112:1235251,1221986:1222131:1231970:1232125:1243436:1243719,	1231971	1232125	1232016	1232016	Frame_Shift_Del	A	-	p.T50fs
KIRP	TCGA-B9-4117-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535489	40535490	Frame_Shift_Ins	-	G	p.K312fs
KIRP	TCGA-B9-4117-01	AMPD2	ENST00000528454.1	chr1	110162761:110162900:110167924:110168055:110168283:110168414,110163773:110163888:110167924:110168055:110168283:110168414,110166460:110166711:110167924:110168055:110168283:110168414,	110167925	110168055	110167929	110167930	Frame_Shift_Ins	-	C	p.A86fs
KIRP	TCGA-B9-4117-01	GHDC	ENST00000587427.1,ENST00000593209.1,ENST00000414034.3,ENST00000301671.8,ENST00000436923.2	chr17	40343035:40343228:40344258:40344760:40344923:40345045,	40344259	40344760	40344321	40344322	Frame_Shift_Ins	-	C	p.A276fs
KIRP	TCGA-B9-4117-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4,ENST00000586588.1	chr19	10250351:10250493:10250721:10251004:10251456:10251585,	10250722	10251004	10250846	10250847	Frame_Shift_Ins	-	C	p.L1211fs
KIRP	TCGA-B9-4117-01	MED25	ENST00000312865.6	chr19	50333078:50333205:50333344:50333475:50333767:50333855,	50333345	50333475	50333382	50333383	Frame_Shift_Ins	-	C	p.K242fs
KIRP	TCGA-B9-4117-01	UTP14A	ENST00000394422.3,ENST00000371051.5	chrX	129044983:129045126:129045741:129045897:129053150:129053270,	129045742	129045897	129045830	129045831	Frame_Shift_Ins	-	G	p.L157fs
KIRP	TCGA-B9-4617-01	SPG7	ENST00000563218.1,ENST00000566221.1,ENST00000268704.2	chr16	89611133:89611180:89613065:89613168:89614410:89614521,	89613066	89613168	89613076	89613077	Frame_Shift_Ins	-	GATTTTT	p.E487fs
KIRP	TCGA-B9-5155-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609125	179609129	Frame_Shift_Del	GTGTT	-	p.V558fs
KIRP	TCGA-B9-5155-01	NAGLU	ENST00000225927.2	chr17	40690687:40690773:40692967:40693224:40695045:40695338,	40692968	40693224	40693013	40693014	Frame_Shift_Ins	-	TT	p.H270fs
KIRP	TCGA-B9-5156-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
KIRP	TCGA-BQ-5875-01	SEPT7	ENST00000350320.6,ENST00000425198.1,ENST00000399035.3,ENST00000435235.1,ENST00000399034.2,ENST00000494488.2	chr7	35925437:35925489:35930277:35930403:35937857:35937993,	35930278	35930403	35930341	35930341	Frame_Shift_Del	A	-	p.R310fs
KIRP	TCGA-BQ-5875-01	MCTS1	ENST00000371317.5	chrX	119737834:119738102:119739261:119739414:119739933:119739991,	119739262	119739414	119739292	119739293	Frame_Shift_Ins	-	AT	p.C14fs
KIRP	TCGA-BQ-5877-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
KIRP	TCGA-BQ-5878-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
KIRP	TCGA-BQ-5879-01	ACTR1B	ENST00000451664.1	chr2	98274686:98274779:98274889:98275466:98275814:98275940,	98274890	98275466	98275011	98275014	Frame_Shift_Del	GAGT	-	p.H178fs
KIRP	TCGA-BQ-5879-01	ACTR1B	ENST00000289228.5	chr2	98274722:98274779:98274889:98275106:98275341:98275466,	98274890	98275106	98275011	98275014	Frame_Shift_Del	GAGT	-	p.H178fs
KIRP	TCGA-BQ-5885-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540288	187540291	Frame_Shift_Del	TCCA	-	p.I2483fs
KIRP	TCGA-BQ-5887-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320707	46320708	Frame_Shift_Del	TC	-	p.E926fs
KIRP	TCGA-BQ-5889-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320707	46320708	Frame_Shift_Del	TC	-	p.E926fs
KIRP	TCGA-BQ-5891-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320707	46320708	Frame_Shift_Del	TC	-	p.E926fs
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000467306.1	chr1	151734851:151734976:151735425:151735622:151735802:151735810,	151735426	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.V54fs
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000486707.1	chr1	151734851:151734976:151735430:151735622:151735802:151735810,	151735431	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.V54fs
KIRP	TCGA-BQ-7045-01	MRPL9	ENST00000368829.3,ENST00000481777.1,ENST00000461182.1,ENST00000478926.1	chr1	151734851:151734976:151735465:151735622:151735802:151735810,	151735466	151735622	151735603	151735616	Frame_Shift_Del	CGCTCCACGATGAC	-	p.V54fs
KIRP	TCGA-BQ-7045-01	HAPLN3	ENST00000562889.1,ENST00000359595.3	chr15	89421061:89421487:89422197:89422500:89424587:89424956,	89422198	89422500	89422488	89422488	Frame_Shift_Del	G	-	p.P231fs
KIRP	TCGA-BQ-7045-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.Q1875fs
KIRP	TCGA-BQ-7051-01	MATN2	ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000523490.1,ENST00000524308.1	chr8	98900302:98900470:98943180:98943750:98954004:98954127,	98943181	98943750	98943606	98943609	Frame_Shift_Del	CTAA	-	p.L190fs
KIRP	TCGA-BQ-7060-01	KBTBD4	ENST00000533290.1,ENST00000526005.1,ENST00000430070.2,ENST00000395288.2	chr11	47593778:47595342:47597144:47597251:47598962:47599576,	47597145	47597251	47597183	47597183	Frame_Shift_Del	T	-	p.R220fs
KIRP	TCGA-BQ-7060-01	TNRC6A	ENST00000491718.1,ENST00000315183.7,ENST00000567232.1,ENST00000395799.3,ENST00000450465.2	chr16	24805864:24806040:24807227:24807260:24808810:24808824,	24807228	24807260	24807240	24807240	Frame_Shift_Del	A	-	p.K1181fs
KIRP	TCGA-BQ-7061-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073973	197073974	Frame_Shift_Ins	-	A	p.I1469fs
KIRP	TCGA-DW-5560-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000529907.1,ENST00000265636.5,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68315534:68315672:68318588:68318654:68321612:68321688,	68318589	68318654	68318634	68318637	Frame_Shift_Del	CATC	-	p.H200fs
KIRP	TCGA-DW-5560-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320707	46320708	Frame_Shift_Del	TC	-	p.E926fs
KIRP	TCGA-DW-5560-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123800094:123800207:123801767:123801903:123804446:123804578,	123801768	123801903	123801801	123801802	Frame_Shift_Ins	-	T	p.L967fs
KIRP	TCGA-DW-5560-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L460fs
KIRP	TCGA-DW-5561-01	GAPDH	ENST00000396861.1,ENST00000492719.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646278:6646382:6646474:6646556:6646749:6646964,	6646475	6646556	6646478	6646485	Frame_Shift_Del	TGCCTCCT	-	p.N149fs
KIRP	TCGA-DZ-6132-01	RPL24	ENST00000495401.1	chr3	101399939:101400059:101401614:101401751:101404661:101404733,	101401615	101401751	101401697	101401698	Frame_Shift_Ins	-	A	p.I82fs
KIRP	TCGA-DZ-6132-01	SEC22A	ENST00000473494.2,ENST00000309934.4,ENST00000492595.1	chr3	122964745:122964861:122978370:122978436:122990368:122990511,	122978371	122978436	122978380	122978380	Frame_Shift_Del	G	-	p.D223fs
KIRP	TCGA-DZ-6134-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
KIRP	TCGA-DZ-6135-01	NFE2L3	ENST00000056233.3	chr7	26217622:26217742:26223320:26223404:26224152:26226745,	26223321	26223404	26223344	26223347	Frame_Shift_Del	TTCT	-	p.T258fs
KIRP	TCGA-EV-5902-01	RABGAP1	ENST00000373647.4,ENST00000456584.1	chr9	125760875:125761045:125772632:125772807:125777821:125777915,	125772633	125772807	125772734	125772738	Frame_Shift_Del	TTCAG	-	p.P492fs
KIRP	TCGA-EV-5902-01	NF2	ENST00000361166.4,ENST00000397789.3,ENST00000361676.4,ENST00000334961.7,ENST00000353887.4,ENST00000361452.4,ENST00000338641.4,ENST00000403999.3	chr22	30064321:30064435:30067814:30067937:30069257:30069475,	30067815	30067937	30067890	30067905	Frame_Shift_Del	AGGCTGCTGCAGATGA	-	p.R359fs
KIRP	TCGA-EV-5902-01	NF2	ENST00000403435.1	chr22	30064321:30064435:30067901:30067937:30069257:30069475,	30067902	30067937	30067890	30067905	Frame_Shift_Del	AGGCTGCTGCAGATGA	-	p.R359fs
KIRP	TCGA-G7-6789-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113306843:113306976:113308442:113308579:113309351:113309556,	113308443	113308579	113308552	113308559	Frame_Shift_Del	CTTTCTTC	-	p.F245fs
KIRP	TCGA-G7-6789-01	SAV1	ENST00000324679.4	chr14	51111461:51111732:51131896:51132337:51134591:51135015,	51131897	51132337	51132011	51132012	Frame_Shift_Ins	-	A	p.F140fs
KIRP	TCGA-G7-6796-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38841011:38841152:38843366:38843604:38850685:38850828,	38843367	38843604	38843585	38843585	Frame_Shift_Del	G	-	p.E2613fs
KIRP	TCGA-G7-6797-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151152656	151152656	Frame_Shift_Del	T	-	p.T862fs
KIRP	TCGA-G7-7502-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000446142.1	chr7	95034650:95034800:95035430:95035559:95036298:95036380,	95035431	95035559	95035516	95035516	Frame_Shift_Del	G	-	p.P274fs
KIRP	TCGA-G7-7502-01	PON2	ENST00000483292.1	chr7	95034650:95034800:95035430:95035584:95036298:95036380,	95035431	95035584	95035516	95035516	Frame_Shift_Del	G	-	p.P274fs
KIRP	TCGA-GL-6846-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099187	56099187	Frame_Shift_Del	T	-	p.K25fs
KIRP	TCGA-GL-7966-01	TCFL5	ENST00000335351.3,ENST00000217162.5	chr20	61488746:61488990:61490715:61490878:61491476:61491660,	61490716	61490878	61490803	61490806	Frame_Shift_Del	AGAA	-	p.F302fs
KIRP	TCGA-GL-8500-01	DLGAP5	ENST00000247191.2	chr14	55650323:55650471:55655659:55655898:55658180:55658262,	55655660	55655898	55655750	55655751	Frame_Shift_Ins	-	AT	p.D49fs
KIRP	TCGA-HE-7128-01	DZIP3	ENST00000479138.1	chr3	108308580:108308686:108324181:108324285:108326935:108327005,108308901:108308943:108324181:108324285:108326935:108327005,	108324182	108324285	108324275	108324275	Frame_Shift_Del	T	-	p.F8fs
KIRP	TCGA-HE-7129-01	HIP1	ENST00000336926.6,ENST00000434438.2	chr7	75167471:75167545:75168642:75168751:75171237:75171299,	75168643	75168751	75168684	75168684	Frame_Shift_Del	T	-	p.K1007fs
KIRP	TCGA-IZ-8195-01	FOXK2	ENST00000473637.2,ENST00000335255.5	chr17	80541888:80542064:80543779:80544076:80544938:80545148,	80543780	80544076	80543893	80543893	Frame_Shift_Del	C	-	p.P465fs
KIRP	TCGA-J7-8537-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539365	187539365	Frame_Shift_Del	G	-	p.S2792fs
KIRP	TCGA-J7-8537-01	TSG101	ENST00000545247.2,ENST00000251968.3	chr11	18537645:18537711:18541065:18541150:18548321:18548368,	18541066	18541150	18541141	18541142	Frame_Shift_Del	TG	-	p.Y17fs
LGG	TCGA-DB-A4XG-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000584328.1,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29665042:29665157:29665721:29665823:29667522:29667663,	29665722	29665823	29665752	29665755	Frame_Shift_Del	ACTT	-	p.2283_2284del
LGG	TCGA-HT-8105-01	TCF12	ENST00000438423.2,ENST00000561346.1,ENST00000559609.1,ENST00000267811.5,ENST00000557843.1,ENST00000452095.2,ENST00000560887.1,ENST00000333725.5	chr15	57458599:57458664:57484355:57484491:57489970:57490023,	57484356	57484491	57484478	57484479	Frame_Shift_Del	CT	-	p.171_171del
LGG	TCGA-E1-5307-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380427.1	chr9	19357962:19358158:19360241:19360487:19361843:19361961,	19360242	19360487	19360274	19360274	Frame_Shift_Del	T	-	p.P1682fs
LGG	TCGA-DU-7015-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939957	76939957	Frame_Shift_Del	T	-	p.Y226fs
LGG	TCGA-DU-7301-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938271	76938272	Frame_Shift_Del	TT	-	p.788_788del
LGG	TCGA-CS-6666-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76919037	76919038	Frame_Shift_Ins	-	T	p.N1280fs
LGG	TCGA-DU-6407-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939340	76939343	Frame_Shift_Del	CTAC	-	p.431_432del
LGG	TCGA-HT-7476-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939347	76939348	Frame_Shift_Del	TT	-	p.429_430del
LGG	TCGA-IK-7675-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937611	76937615	Frame_Shift_Del	CTTTT	-	p.1007_1008del
LGG	TCGA-HT-7611-01	FOXM1	ENST00000361953.3,ENST00000342628.2,ENST00000359843.3	chr12	2981261:2981413:2983142:2983691:2986085:2986107,	2983143	2983691	2983282	2983283	Frame_Shift_Del	GA	-	p.121_122del
LGG	TCGA-HT-7611-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938601	76938605	Frame_Shift_Del	AATTT	-	p.677_678del
LGG	TCGA-DU-7306-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986119	36986120	Frame_Shift_Ins	-	G	p.L946fs
LGG	TCGA-IK-8125-01	HFM1	ENST00000430465.1	chr1	91781696:91781741:91781947:91782033:91784634:91784766,91781696:91781741:91781947:91782033:91784849:91784947,	91781948	91782033	91781979	91781980	Frame_Shift_Ins	-	T	p.I956fs
LGG	TCGA-HT-A61B-01	GSPT1	ENST00000565267.1,ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11980633:11980788:11981426:11981607:11984918:11984996,	11981427	11981607	11981588	11981589	Frame_Shift_Ins	-	T	p.D265fs
LGG	TCGA-DU-6395-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938777	76938777	Frame_Shift_Del	T	-	p.R620fs
LGG	TCGA-FG-8185-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939914	76939915	Frame_Shift_Del	AG	-	p.240_241del
LGG	TCGA-HT-7689-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939638	76939639	Frame_Shift_Ins	-	T	p.Y332_V333delinsX
LGG	TCGA-DH-A66F-01	ASCC1	ENST00000527593.1,ENST00000317168.6,ENST00000526751.1,ENST00000524829.1,ENST00000317126.4,ENST00000394919.1,ENST00000530461.1,ENST00000545550.1	chr10	73963199:73963282:73970489:73970589:73972944:73973035,	73970490	73970589	73970535	73970535	Frame_Shift_Del	G	-	p.P56fs
LGG	TCGA-HT-7688-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845531	63845531	Frame_Shift_Del	A	-	p.R423fs
LGG	TCGA-HT-7688-01	CAD	ENST00000264705.4,ENST00000456311.1,ENST00000403525.1,ENST00000487239.1	chr2	27462019:27462100:27462198:27462339:27462564:27462652,	27462199	27462339	27462334	27462334	Frame_Shift_Del	G	-	p.D1796fs
LGG	TCGA-DB-A4XH-01	NDUFA3	ENST00000419113.1	chr19	54609271:54609318:54610117:54610285:54611746:54611840,	54610118	54610285	54610132	54610135	Frame_Shift_Del	GATG	-	p.59_60del
LGG	TCGA-CS-6665-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577105	7577105	Frame_Shift_Del	G	-	p.P146fs
LGG	TCGA-CS-6665-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891806	2891806	Frame_Shift_Del	C	-	p.K560fs
LGG	TCGA-FG-6689-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579589	7579590	Frame_Shift_Ins	-	A	p.S33fs
LGG	TCGA-FG-6689-01	KATNA1	ENST00000367411.2,ENST00000444282.1,ENST00000335643.8	chr6	149953894:149954052:149959521:149959696:149969604:149969829,	149959522	149959696	149959574	149959574	Frame_Shift_Del	T	-	p.N37fs
LGG	TCGA-DU-5851-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939056	76939060	Frame_Shift_Del	ATTTA	-	p.525_527del
LGG	TCGA-DU-A5TW-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937833	76937836	Frame_Shift_Del	TCTT	-	p.933_934del
LGG	TCGA-DB-5279-01	ZCCHC9	ENST00000380199.5,ENST00000438268.2,ENST00000505860.1,ENST00000510227.1,ENST00000407610.3,ENST00000506458.1,ENST00000254037.2,ENST00000507402.1	chr5	80604764:80604857:80607029:80607098:80608362:80608433,	80607030	80607098	80607067	80607070	Frame_Shift_Del	AAAG	-	p.222_223del
LGG	TCGA-FG-A4MY-01	FAF2	ENST00000261942.6,ENST00000510446.1	chr5	175906188:175906257:175913355:175913490:175915951:175916028,	175913356	175913490	175913383	175913384	Frame_Shift_Ins	-	A	p.Q54fs
LGG	TCGA-HT-7480-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64779134	64779134	Frame_Shift_Del	C	-	p.K175fs
LGG	TCGA-HT-7873-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573996	7574003	Frame_Shift_Del	AGCTCTCG	-	p.303_305del
LGG	TCGA-HT-7873-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938029	76938029	Frame_Shift_Del	G	-	p.R869fs
LGG	TCGA-DU-6401-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939673	76939674	Frame_Shift_Ins	-	T	p.L321fs
LGG	TCGA-HW-7489-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938654	76938655	Frame_Shift_Ins	-	T	p.K660fs
LGG	TCGA-HT-A619-01	TSPAN32	ENST00000381121.3	chr11	2337458:2337542:2337805:2337897:2338573:2338755,2337458:2337542:2337805:2337897:2339092:2339154,	2337806	2337897	2337873	2337874	Frame_Shift_Ins	-	G	p.K232fs
LGG	TCGA-HT-7858-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939540	76939540	Frame_Shift_Del	T	-	p.K365fs
LGG	TCGA-DU-6397-01	SS18	ENST00000269137.7,ENST00000539849.1,ENST00000545952.1,ENST00000269138.5,ENST00000585121.1,ENST00000542420.2,ENST00000539244.2,ENST00000579640.1,ENST00000415083.2,ENST00000542743.1,ENST00000585241.1	chr18	23619373:23619420:23632587:23632809:23637552:23637706,	23632588	23632809	23632625	23632626	Frame_Shift_Del	AT	-	p.190_191del
LGG	TCGA-CS-5397-01	GDPD3	ENST00000566613.1	chr16	30116164:30116330:30119693:30119753:30122708:30122711,	30119694	30119753	30119725	30119725	Frame_Shift_Del	G	-	p.L246fs
LGG	TCGA-HT-7479-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28117008:28117068:28171272:28171400:28196929:28197038,	28171273	28171400	28171297	28171297	Frame_Shift_Del	A	-	p.A686fs
LGG	TCGA-HT-8110-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96044604:96044722:96053264:96053396:96058135:96058426,	96053265	96053396	96053387	96053387	Frame_Shift_Del	T	-	p.T1411fs
LGG	TCGA-DU-7299-01	ZC3H7A	ENST00000575041.1	chr16	11862170:11862357:11864638:11864843:11868091:11868148,	11864639	11864843	11864798	11864799	Frame_Shift_Del	GA	-	p.317_317del
LGG	TCGA-DB-A4XF-01	CAND1	ENST00000544619.1,ENST00000545606.1	chr12	67703680:67703850:67703931:67704096:67705472:67705580,	67703932	67704096	67704094	67704094	Frame_Shift_Del	A	-	p.I1119fs
LGG	TCGA-HW-7490-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070598	197070599	Frame_Shift_Del	TC	-	p.2595_2595del
LGG	TCGA-HW-7490-01	CYP3A7	ENST00000336374.2,ENST00000477357.1	chr7	99311091:99311158:99312177:99312305:99313380:99313529,	99312178	99312305	99312223	99312224	Frame_Shift_Del	TT	-	p.251_252del
LGG	TCGA-HW-7490-01	UHRF2	ENST00000276893.5,ENST00000468435.2	chr9	6493825:6493932:6497197:6497360:6498017:6498150,	6497198	6497360	6497275	6497278	Frame_Shift_Del	CAGT	-	p.561_562del
LGG	TCGA-HW-7490-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918976	76918977	Frame_Shift_Del	TA	-	p.1301_1301del
LGG	TCGA-DU-7300-01	EPC2	ENST00000258484.6	chr2	149528612:149528956:149539212:149539349:149541165:149541325,	149539213	149539349	149539217	149539218	Frame_Shift_Del	AG	-	p.575_575del
LGG	TCGA-DU-7300-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589623	67589624	Frame_Shift_Del	AT	-	p.462_462del
LGG	TCGA-FG-6691-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939673	76939674	Frame_Shift_Ins	-	T	p.L321fs
LGG	TCGA-DU-7298-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937745	76937745	Frame_Shift_Del	T	-	p.V964X
LGG	TCGA-DU-7010-01	HIF3A	ENST00000528563.1	chr19	46815417:46815524:46815762:46815910:46823699:46823818,46815417:46815524:46815762:46815910:46823703:46823818,	46815763	46815910	46815871	46815872	Frame_Shift_Ins	-	A	p.P260fs
LGG	TCGA-FG-8188-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939473	76939474	Frame_Shift_Del	TT	-	p.387_388del
LGG	TCGA-HT-7604-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937745	76937745	Frame_Shift_Del	T	-	p.V964X
LGG	TCGA-DH-5140-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574025	7574025	Frame_Shift_Del	C	-	p.R296fs
LGG	TCGA-DH-5140-01	UGGT1	ENST00000259253.6,ENST00000376723.3,ENST00000375990.3	chr2	128937359:128937444:128938463:128938646:128939703:128939864,	128938464	128938646	128938471	128938471	Frame_Shift_Del	T	-	p.I1303fs
LGG	TCGA-HT-8114-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937602	76937603	Frame_Shift_Ins	-	T	p.I1011fs
LGG	TCGA-HT-7606-01	RBM41	ENST00000203616.8,ENST00000495517.1	chrX	106313419:106313655:106331964:106332069:106356626:106356698,	106331965	106332069	106331986	106331986	Frame_Shift_Del	C	-	p.E203fs
LGG	TCGA-HT-7606-01	RBM41	ENST00000372487.1,ENST00000372479.3	chrX	106312539:106312632:106331665:106332069:106358581:106358684,	106331666	106332069	106331986	106331986	Frame_Shift_Del	C	-	p.E203fs
LGG	TCGA-DB-5276-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939181	76939184	Frame_Shift_Del	AGGA	-	p.484_485del
LGG	TCGA-HT-7605-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54319086:54319300:54324819:54324957:54325468:54325569,	54324820	54324957	54324903	54324904	Frame_Shift_Del	AT	-	p.454_454del
LGG	TCGA-DB-A4XC-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938089	76938092	Frame_Shift_Del	TCTC	-	p.848_849del
LGG	TCGA-DU-6394-01	HGD	ENST00000494453.1	chr3	120352118:120352175:120357301:120357428:120360435:120360540,120352180:120352437:120357301:120357428:120360435:120360540,	120357302	120357428	120357338	120357338	Frame_Shift_Del	C	-	p.V324fs
LGG	TCGA-DU-7006-01	PIK3R3	ENST00000354242.4,ENST00000425892.1,ENST00000420542.1	chr1	46546313:46546422:46597518:46597628:46598455:46598583,	46597519	46597628	46597617	46597618	Frame_Shift_Ins	-	TGTA	p.N3fs
LGG	TCGA-HT-7681-01	SAMD4A	ENST00000251091.5,ENST00000392067.3,ENST00000555192.1,ENST00000357634.3,ENST00000554335.1	chr14	55231172:55231258:55236821:55236940:55241651:55241853,	55236822	55236940	55236839	55236840	Frame_Shift_Ins	-	A	p.Q538fs
LGG	TCGA-DU-7018-01	MRPL15	ENST00000519831.1,ENST00000260102.4,ENST00000522521.1	chr8	55049170:55049225:55049827:55049993:55055222:55055346,	55049828	55049993	55049886	55049889	Frame_Shift_Del	GGTC	-	p.107_108del
LGG	TCGA-CS-5394-01	CIC	ENST00000575287.1	chr19	42798324:42798456:42798726:42798887:42798975:42799157,	42798727	42798887	42798786	42798787	Frame_Shift_Ins	-	A	p.L1453fs
LGG	TCGA-CS-5394-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42798324:42798456:42798755:42798887:42798975:42799157,	42798756	42798887	42798786	42798787	Frame_Shift_Ins	-	A	p.L1453fs
LGG	TCGA-E1-5302-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577101	7577101	Frame_Shift_Del	C	-	p.R148fs
LGG	TCGA-HT-7875-01	ZMYM2	ENST00000382871.2,ENST00000382881.3,ENST00000382874.2,ENST00000382869.3	chr13	20567965:20568059:20576989:20577275:20579213:20579379,	20576990	20577275	20577051	20577052	Frame_Shift_Del	TT	-	p.303_303del
LGG	TCGA-HT-7875-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000560764.1,ENST00000537840.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57524909:57525054:57526240:57526305:57535669:57535713,	57526241	57526305	57526268	57526269	Frame_Shift_Del	CA	-	p.333_333del
LGG	TCGA-HT-7875-01	SYCP2L	ENST00000283141.6,ENST00000341041.4	chr6	10942909:10942979:10955348:10955450:10956368:10956475,	10955349	10955450	10955433	10955436	Frame_Shift_Del	AAGA	-	p.680_681del
LGG	TCGA-HT-7475-01	EIF4A1	ENST00000582169.1	chr17	7477583:7477626:7477839:7477996:7478436:7478483,	7477840	7477996	7477923	7477923	Frame_Shift_Del	C	-	p.L44fs
LGG	TCGA-HT-7475-01	EIF4A1	ENST00000584712.1,ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000578476.1,ENST00000582746.1,ENST00000380512.5,ENST00000581384.1,ENST00000578495.1,ENST00000580888.1,ENST00000577269.1,ENST00000582848.1,ENST00000577929.1,ENST00000580461.1,ENST00000577738.1,ENST00000584901.1,ENST00000581770.1,ENST00000585024.1	chr17	7476159:7476182:7477863:7477996:7478436:7478483,7477583:7477626:7477863:7477996:7478436:7478483,	7477864	7477996	7477923	7477923	Frame_Shift_Del	C	-	p.L44fs
LGG	TCGA-HT-7475-01	EIF4A1	ENST00000579139.1	chr17	7477583:7477626:7477865:7477996:7478436:7478483,	7477866	7477996	7477923	7477923	Frame_Shift_Del	C	-	p.L44fs
LGG	TCGA-HT-7475-01	SULT1C2	ENST00000442801.1	chr2	108910684:108910810:108921029:108921156:108921627:108921722,	108921030	108921156	108921152	108921152	Frame_Shift_Del	A	-	p.G166fs
LGG	TCGA-HT-7475-01	SULT1C2	ENST00000409880.1	chr2	108910684:108910810:108921042:108921156:108921627:108921722,	108921043	108921156	108921152	108921152	Frame_Shift_Del	A	-	p.G166fs
LGG	TCGA-E1-5303-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939929	76939930	Frame_Shift_Ins	-	A	p.L235fs
LGG	TCGA-CS-5390-01	APPL1	ENST00000288266.3	chr3	57301769:57301820:57302425:57302515:57303568:57307496,	57302426	57302515	57302495	57302498	Frame_Shift_Del	AAAC	-	p.654_655del
LGG	TCGA-QH-A65S-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573991	7573992	Frame_Shift_Ins	-	A	p.E346_A347delinsX
LGG	TCGA-QH-A65S-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918915	76918915	Frame_Shift_Del	T	-	p.K1321fs
LGG	TCGA-DB-A64L-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793215	42793218	Frame_Shift_Del	CAGT	-	p.369_370del
LGG	TCGA-HT-7676-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76854879:76855049:76855200:76855289:76855902:76856033,	76855201	76855289	76855230	76855230	Frame_Shift_Del	G	-	p.M1882X
LGG	TCGA-DU-8158-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.L247fs
LGG	TCGA-DU-8158-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699512	30699513	Frame_Shift_Del	TA	-	p.456_456del
LGG	TCGA-HT-7469-01	SLC26A4	ENST00000265715.3	chr7	107303740:107303880:107312582:107312693:107314608:107314793,	107312583	107312693	107312689	107312692	Frame_Shift_Del	AGTT	-	p.137_138del
LGG	TCGA-HT-7469-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939510	76939511	Frame_Shift_Del	AA	-	p.375_375del
LGG	TCGA-HT-7616-01	APPBP2	ENST00000083182.3,ENST00000590244.1	chr17	58556522:58556632:58571826:58571978:58577759:58577848,	58571827	58571978	58571849	58571849	Frame_Shift_Del	G	-	p.I120fs
LGG	TCGA-HT-7616-01	FUBP1	ENST00000421641.1,ENST00000370768.2,ENST00000294623.4,ENST00000436586.2,ENST00000370767.1	chr1	78432377:78432435:78432567:78432639:78432732:78432782,	78432568	78432639	78432569	78432570	Frame_Shift_Ins	-	G	p.P138fs
LGG	TCGA-HT-7616-01	ASB6	ENST00000277458.4,ENST00000450050.2	chr9	132400851:132400938:132401480:132401589:132401680:132401787,	132401481	132401589	132401579	132401580	Frame_Shift_Del	CT	-	p.138_138del
LGG	TCGA-HT-A618-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939387	76939387	Frame_Shift_Del	T	-	p.K416fs
LGG	TCGA-P5-A5EZ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578213	Frame_Shift_Del	A	-	p.R81fs
LGG	TCGA-P5-A5EV-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390354	45390355	Frame_Shift_Ins	-	C	p.S28fs
LGG	TCGA-HT-7473-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938452	76938453	Frame_Shift_Ins	-	T	p.D728fs
LGG	TCGA-DU-6402-01	NF1	ENST00000495910.2,ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29546022:29546136:29548867:29548947:29550461:29550585,	29548868	29548947	29548901	29548901	Frame_Shift_Del	G	-	p.I558fs
LGG	TCGA-HT-8011-01	CREBBP	ENST00000572134.1,ENST00000262367.5,ENST00000382070.3	chr16	3828011:3828183:3828700:3828818:3830732:3830868,	3828701	3828818	3828795	3828795	Frame_Shift_Del	G	-	p.P616fs
LGG	TCGA-P5-A5EX-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046885	17046886	Frame_Shift_Ins	-	C	p.A351fs
LGG	TCGA-CS-4944-01	KDM4C	ENST00000536108.1,ENST00000428870.2,ENST00000442236.2,ENST00000381309.3,ENST00000381306.3	chr9	7105401:7105500:7128065:7128236:7165237:7165355,7103684:7103870:7128065:7128236:7165237:7165355,	7128066	7128236	7128074	7128075	Frame_Shift_Del	GG	-	p.873_873del
LGG	TCGA-HT-8012-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793215	42793218	Frame_Shift_Del	CAGT	-	p.369_370del
LGG	TCGA-HT-8012-01	CIC	ENST00000572681.2,ENST00000160740.3	chr19	42796237:42796359:42796451:42796618:42796717:42796749,42796237:42796359:42796451:42796618:42796720:42797011,	42796452	42796618	42796554	42796555	Frame_Shift_Del	TG	-	p.1037_1037del
LGG	TCGA-HT-8012-01	PMPCB	ENST00000453466.1,ENST00000444457.1,ENST00000420236.2,ENST00000428154.1,ENST00000249269.4,ENST00000443722.1,ENST00000498530.1	chr7	102944857:102944937:102948042:102948155:102949398:102949542,	102948043	102948155	102948108	102948109	Frame_Shift_Del	AA	-	p.267_268del
LGG	TCGA-HW-A5KJ-01	SZT2	ENST00000460536.1,ENST00000562955.1,ENST00000372442.1	chr1	43911849:43911930:43912012:43912087:43912625:43912839,	43912013	43912087	43912030	43912033	Frame_Shift_Del	CAAA	-	p.2948_2949del
LGG	TCGA-HW-A5KJ-01	ARHGEF39	ENST00000378395.2,ENST00000490638.1,ENST00000378387.3	chr9	35662508:35662738:35662942:35663071:35663318:35663389,	35662943	35663071	35663036	35663037	Frame_Shift_Del	CT	-	p.194_194del
LGG	TCGA-P5-A5EW-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939758	76939762	Frame_Shift_Del	TTTCT	-	p.291_293del
LGG	TCGA-HT-7884-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577076	7577077	Frame_Shift_Ins	-	C	p.N156fs
LGG	TCGA-HT-7884-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939673	76939674	Frame_Shift_Ins	-	T	p.L321fs
LGG	TCGA-HT-7677-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230636234:230636348:230638812:230638977:230642030:230642195,	230638813	230638977	230638967	230638968	Frame_Shift_Del	CT	-	p.1772_1772del
LGG	TCGA-HT-7677-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157469999	157469999	Frame_Shift_Del	G	-	p.M918fs
LGG	TCGA-DU-A5TS-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938084	76938085	Frame_Shift_Ins	-	A	p.F850fs
LGG	TCGA-HT-7472-01	MKLN1	ENST00000352689.6,ENST00000494785.1,ENST00000458153.1,ENST00000421797.2	chr7	131099403:131099469:131113791:131113904:131122543:131122756,	131113792	131113904	131113796	131113799	Frame_Shift_Del	TGTT	-	p.284_285del
LGG	TCGA-HT-7472-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937477	76937480	Frame_Shift_Del	TCTC	-	p.1052_1053del
LGG	TCGA-FG-A60K-01	CIC	ENST00000575287.1	chr19	42798324:42798456:42798726:42798887:42798975:42799157,	42798727	42798887	42798816	42798817	Frame_Shift_Ins	-	GCGG	p.L1463fs
LGG	TCGA-FG-A60K-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42798324:42798456:42798755:42798887:42798975:42799157,	42798756	42798887	42798816	42798817	Frame_Shift_Ins	-	GCGG	p.L1463fs
LGG	TCGA-DH-A66B-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576886	7576887	Frame_Shift_Ins	-	T	p.K188fs
LGG	TCGA-DH-A66B-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144886215:144886326:144886737:144886995:144887103:144887184,	144886738	144886995	144886879	144886882	Frame_Shift_Del	GGGA	-	p.956_957del
LGG	TCGA-DH-A66B-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938097	76938100	Frame_Shift_Del	TCTT	-	p.845_846del
LGG	TCGA-DU-6399-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577081	7577099	Frame_Shift_Del	TCCTCTGTGCGCCGGTCTC	-	p.148_154del
LGG	TCGA-DU-6399-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939864	76939864	Frame_Shift_Del	T	-	p.K257fs
LGG	TCGA-HT-7470-01	ZW10	ENST00000535142.1,ENST00000200135.3	chr11	113612415:113612487:113614523:113614762:113618252:113618435,	113614524	113614762	113614641	113614641	Frame_Shift_Del	T	-	p.N465fs
LGG	TCGA-HT-7470-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1,ENST00000400866.2	chrX	76872080:76872198:76874273:76874449:76875862:76876000,	76874274	76874449	76874329	76874330	Frame_Shift_Ins	-	T	p.R1760fs
LGG	TCGA-DU-7008-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76940037	76940038	Frame_Shift_Ins	-	T	p.N199fs
LGG	TCGA-HT-A4DS-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527568	29527569	Frame_Shift_Del	CT	-	p.339_339del
LGG	TCGA-DB-5275-01	API5	ENST00000420461.2,ENST00000378852.3,ENST00000534600.1,ENST00000531273.1,ENST00000455725.2	chr11	43344979:43345186:43348056:43348161:43349338:43349428,	43348057	43348161	43348086	43348087	Frame_Shift_Del	AT	-	p.206_206del
LGG	TCGA-DB-5275-01	GRAMD1B	ENST00000529750.1,ENST00000534764.1,ENST00000532581.1,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123474133:123474249:123476029:123476186:123477316:123477506,	123476030	123476186	123476150	123476153	Frame_Shift_Del	ACTA	-	p.286_287del
LGG	TCGA-HT-7879-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577150	7577151	Frame_Shift_Del	TT	-	p.131_131del
LGG	TCGA-HT-7879-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938001	76938001	Frame_Shift_Del	G	-	p.A878fs
LGG	TCGA-HT-7854-01	NCOR2	ENST00000429285.2,ENST00000461081.1,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1	chr12	124816864:124817010:124817675:124817825:124818969:124819163,124816864:124817013:124817675:124817825:124818969:124819163,	124817676	124817825	124817682	124817683	Frame_Shift_Ins	-	C	p.E2240fs
LGG	TCGA-HT-7854-01	WDR78	ENST00000431318.1,ENST00000371022.3,ENST00000371023.3	chr1	67358959:67359096:67370883:67371058:67390344:67390379,	67370884	67371058	67371036	67371037	Frame_Shift_Ins	-	A	p.K65_S66delinsX
LGG	TCGA-HT-7854-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604041	111604042	Frame_Shift_Ins	-	CAGA	p.S400fs
LGG	TCGA-FG-5964-01	CLK1	ENST00000432425.1,ENST00000473565.1,ENST00000409403.2	chr2	201725960:201726189:201726424:201726585:201729286:201729379,	201726425	201726585	201726490	201726493	Frame_Shift_Del	CTTC	-	p.32_33del
LGG	TCGA-FG-A4MU-01	KLHDC1	ENST00000554512.1,ENST00000556392.1,ENST00000555704.1,ENST00000359332.2	chr14	50201306:50201379:50206815:50206900:50210470:50210523,	50206816	50206900	50206884	50206885	Frame_Shift_Ins	-	A	p.L322fs
LGG	TCGA-FG-A4MU-01	SUSD3	ENST00000375469.1	chr9	95831381:95831430:95838065:95838254:95840127:95840275,	95838066	95838254	95838087	95838087	Frame_Shift_Del	T	-	p.L37fs
LGG	TCGA-CS-4938-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939674	76939674	Frame_Shift_Del	T	-	p.L321X
LGG	TCGA-HT-7694-01	AGO1	ENST00000373204.4,ENST00000373206.1	chr1	36359274:36359411:36359637:36359772:36359915:36360003,	36359638	36359772	36359738	36359739	Frame_Shift_Del	CT	-	p.250_250del
LGG	TCGA-HT-7694-01	CLIP2	ENST00000395060.1,ENST00000223398.6,ENST00000361545.5	chr7	73791024:73791152:73795135:73795193:73800850:73800927,	73795136	73795193	73795186	73795187	Frame_Shift_Del	TG	-	p.824_824del
LGG	TCGA-DB-5281-01	SBF2	ENST00000256190.8	chr11	9838386:9838571:9850902:9851043:9853770:9853967,	9850903	9851043	9850991	9850992	Frame_Shift_Ins	-	AAGT	p.L1235fs
LGG	TCGA-E1-5319-01	TYK2	ENST00000531836.1,ENST00000525621.1,ENST00000264818.6,ENST00000529370.1	chr19	10478839:10478878:10478970:10479094:10488889:10489082,	10478971	10479094	10479066	10479067	Frame_Shift_Del	AA	-	p.74_75del
LGG	TCGA-DB-5280-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938749	76938765	Frame_Shift_Del	GTCGCCTCAAGGGTGTA	-	p.624_629del
LGG	TCGA-CS-5393-01	KRT20	ENST00000167588.3	chr17	39033631:39033669:39034396:39034617:39036064:39036190,	39034397	39034617	39034595	39034596	Frame_Shift_Del	AG	-	p.314_314del
LGG	TCGA-DU-5874-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749492	33749493	Frame_Shift_Ins	-	A	p.D186_R187delinsX
LGG	TCGA-DB-A64P-01	LRRC37A2	ENST00000576629.1,ENST00000572638.1,ENST00000333412.3	chr17	44627780:44627885:44630765:44630815:44632517:44632572,	44630766	44630815	44630803	44630812	Frame_Shift_Del	AAGGATTCTC	-	p.1616_1619del
LGG	TCGA-HT-7855-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277079	114277080	Frame_Shift_Del	CT	-	p.2435_2435del
LGG	TCGA-HT-7855-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918950	76918951	Frame_Shift_Del	CA	-	p.1309_1310del
LGG	TCGA-DB-5274-01	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000430352.2,ENST00000586539.1	chr17	66883476:66883647:66887629:66887737:66890313:66890451,	66887630	66887737	66887644	66887645	Frame_Shift_Ins	-	G	p.I1004fs
LGG	TCGA-DB-5274-01	EPC2	ENST00000258484.6,ENST00000397424.2	chr2	149501190:149501336:149511495:149511702:149519350:149519378,	149511496	149511702	149511681	149511682	Frame_Shift_Del	AG	-	p.215_215del
LGG	TCGA-DB-5274-01	OGT	ENST00000498566.1	chrX	70753149:70753186:70756027:70756208:70757678:70757922,	70756028	70756208	70756047	70756050	Frame_Shift_Del	TTCC	-	p.19_20del
LGG	TCGA-HT-8564-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322259	27322259	Frame_Shift_Del	T	-	p.Q1234fs
LGG	TCGA-HT-8564-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
LGG	TCGA-HT-8564-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218375	134218375	Frame_Shift_Del	C	-	p.A124fs
LGG	TCGA-HT-8564-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308890	33308891	Frame_Shift_Ins	-	A	p.L310fs
LGG	TCGA-HT-8564-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46822749:46822854:46829580:46829694:46830949:46831050,	46829581	46829694	46829683	46829683	Frame_Shift_Del	T	-	p.W293fs
LGG	TCGA-HT-8564-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232949	19232950	Frame_Shift_Ins	-	A	p.S467fs
LGG	TCGA-HT-8564-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67302912	67302912	Frame_Shift_Del	T	-	p.I248fs
LGG	TCGA-HT-8564-01	DIP2A	ENST00000400274.1,ENST00000435722.3,ENST00000457905.3,ENST00000427143.2,ENST00000417564.2,ENST00000318711.7,ENST00000494435.1,ENST00000466639.1,ENST00000473752.1	chr21	47953916:47954026:47954497:47954600:47957136:47957201,	47954498	47954600	47954526	47954527	Frame_Shift_Ins	-	G	p.V519fs
LGG	TCGA-HT-8564-01	CLU	ENST00000522299.1,ENST00000560366.1,ENST00000519472.1,ENST00000523589.1,ENST00000518050.1	chr8	27466585:27466603:27467991:27468117:27472171:27472198,	27467992	27468117	27468075	27468076	Frame_Shift_Del	AG	-	p.5_5del
LGG	TCGA-HT-8564-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138867384:138867458:138869331:138869403:138870350:138870502,	138869332	138869403	138869332	138869334	Frame_Shift_Del	TCT	-	p.534_534del
LGG	TCGA-DU-8161-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093068	160093069	Frame_Shift_Ins	-	C	p.P81fs
LGG	TCGA-DU-8168-01	TCERG1L	ENST00000483040.1	chr10	132932641:132932711:132944768:132944923:132961384:132961473,132932641:132932711:132944768:132944923:132954282:132954552,	132944769	132944923	132944858	132944861	Frame_Shift_Del	CAGA	-	p.366_367del
LGG	TCGA-VM-A8CF-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939666	76939669	Frame_Shift_Del	TCAA	-	p.IE360fs
LGG	TCGA-HT-7677-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230636234:230636348:230638812:230638977:230642030:230642195,	230638813	230638977	230638967	230638968	Frame_Shift_Del	CT	-	p.S1772fs
LGG	TCGA-HT-7677-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157469999	157469999	Frame_Shift_Del	G	-	p.M931fs
LGG	TCGA-HT-7677-01	TBX2	ENST00000240328.3,ENST00000419047.1	chr17	59481966:59482130:59482562:59483197:59485414:59486786,	59482563	59483197	59482747	59482748	Frame_Shift_Ins	-	G	p.GG412fs
LGG	TCGA-DB-5278-01	PARN	ENST00000437198.2,ENST00000341484.7,ENST00000539279.1,ENST00000569444.1,ENST00000420015.2	chr16	14678605:14678648:14680174:14680218:14687157:14687235,	14680175	14680218	14680201	14680201	Frame_Shift_Del	T	-	p.K312fs
LGG	TCGA-HT-7604-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937745	76937745	Frame_Shift_Del	T	-	p.K1001fs
LGG	TCGA-S9-A7IZ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938929	76938929	Frame_Shift_Del	C	-	p.E607fs
LGG	TCGA-S9-A7J3-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145609279:145609473:145610219:145610480:145613012:145613306,	145610220	145610480	145610427	145610427	Frame_Shift_Del	C	-	p.S266fs
LGG	TCGA-S9-A7J3-01	ALG13	ENST00000394780.3,ENST00000470971.1	chrX	110979941:110980107:110987895:110988132:110996017:110996058,	110987896	110988132	110988026	110988026	Frame_Shift_Del	T	-	p.P945fs
LGG	TCGA-DU-A7T8-01	ITGA10	ENST00000468261.1,ENST00000369304.3	chr1	145527612:145527724:145527927:145528037:145528253:145528345,	145527928	145528037	145527998	145527998	Frame_Shift_Del	G	-	p.G80fs
LGG	TCGA-DB-A64O-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
LGG	TCGA-P5-A5F4-01	LAG3	ENST00000441671.2,ENST00000203629.2	chr12	6882452:6882505:6882862:6883167:6883760:6884030,	6882863	6883167	6882941	6882942	Frame_Shift_Ins	-	C	p.SP95fs
LGG	TCGA-DB-A75M-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939652	76939652	Frame_Shift_Del	T	-	p.M366fs
LGG	TCGA-S9-A6WP-01	HDAC11	ENST00000433119.1	chr3	13524963:13525064:13538235:13538352:13540012:13540055,13524966:13525064:13538235:13538352:13542212:13542289,	13538236	13538352	13538268	13538268	Frame_Shift_Del	C	-	p.I95fs
LGG	TCGA-S9-A6WP-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
LGG	TCGA-HT-8114-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937602	76937603	Frame_Shift_Ins	-	T	p.K1049fs
LGG	TCGA-HT-8114-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938089	76938092	Frame_Shift_Del	TCTC	-	p.ET886fs
LGG	TCGA-WY-A85A-01	MUTYH	ENST00000482094.1,ENST00000456914.2,ENST00000372100.5,ENST00000372115.3,ENST00000529892.1,ENST00000528332.2,ENST00000372110.3,ENST00000481571.1,ENST00000450313.1,ENST00000533178.1,ENST00000354383.6,ENST00000475516.1,ENST00000467459.1,ENST00000529984.1,ENST00000448481.1,ENST00000372098.3,ENST00000528013.2,ENST00000488731.2,ENST00000372104.1,ENST00000355498.2	chr1	45796187:45796229:45796853:45797006:45797091:45797228,	45796854	45797006	45796886	45796886	Frame_Shift_Del	G	-	p.H482fs
LGG	TCGA-DB-5274-01	EPC2	ENST00000258484.6,ENST00000397424.2	chr2	149501190:149501336:149511495:149511702:149519350:149519378,	149511496	149511702	149511681	149511682	Frame_Shift_Del	AG	-	p.TE215fs
LGG	TCGA-DB-5274-01	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000430352.2,ENST00000586539.1	chr17	66883476:66883647:66887629:66887737:66890313:66890451,	66887630	66887737	66887644	66887645	Frame_Shift_Ins	-	G	p.R1004fs
LGG	TCGA-DB-5274-01	OGT	ENST00000498566.1	chrX	70753149:70753186:70756027:70756208:70757678:70757922,	70756028	70756208	70756047	70756050	Frame_Shift_Del	TTCC	-	p.LS19fs
LGG	TCGA-S9-A6WH-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028465	100028465	Frame_Shift_Del	C	-	p.A276fs
LGG	TCGA-DB-A75O-01	TBC1D1	ENST00000446803.2,ENST00000261439.4,ENST00000508802.1,ENST00000491553.1	chr4	38016503:38016594:38019974:38020064:38022211:38022316,	38019975	38020064	38020014	38020014	Frame_Shift_Del	A	-	p.K309fs
LGG	TCGA-DB-A75O-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579323	7579324	Frame_Shift_Ins	-	A	p.D122fs
LGG	TCGA-HT-7611-01	FOXM1	ENST00000361953.3,ENST00000342628.2,ENST00000359843.3	chr12	2981261:2981413:2983142:2983691:2986085:2986107,	2983143	2983691	2983282	2983283	Frame_Shift_Del	GA	-	p.L121fs
LGG	TCGA-HT-7611-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938601	76938605	Frame_Shift_Del	AATTT	-	p.KL715fs
LGG	TCGA-HW-A5KM-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937664	76937697	Frame_Shift_Del	AAAATGACAAATTTCTTCTCGCTCAGGTAACTTT	-	p.EKLPEREEICHF1017fs
LGG	TCGA-DU-A7TI-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938099	76938100	Frame_Shift_Del	TT	-	p.Q883fs
LGG	TCGA-FG-8188-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939473	76939474	Frame_Shift_Del	TT	-	p.K425fs
LGG	TCGA-VV-A829-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484991	56484994	Frame_Shift_Del	TCTT	-	p.KR1280fs
LGG	TCGA-DU-8165-01	PAFAH1B1	ENST00000570400.1	chr17	2541591:2541614:2569309:2569384:2570285:2570492,	2569310	2569384	2569347	2569347	Frame_Shift_Del	A	-	p.E52fs
LGG	TCGA-DB-A64P-01	LRRC37A2	ENST00000576629.1,ENST00000572638.1,ENST00000333412.3	chr17	44627780:44627885:44630765:44630815:44632517:44632572,	44630766	44630815	44630803	44630812	Frame_Shift_Del	AAGGATTCTC	-	p.EGFS1616fs
LGG	TCGA-TQ-A8XE-01	RTN1	ENST00000432103.2,ENST00000395090.1,ENST00000557422.1,ENST00000474911.1,ENST00000267484.5,ENST00000342503.4	chr14	60069782:60069841:60069929:60069976:60070569:60070639,	60069930	60069976	60069953	60069957	Frame_Shift_Del	GTAGA	-	p.TLP734fs
LGG	TCGA-TQ-A8XE-02	RTN1	ENST00000432103.2,ENST00000395090.1,ENST00000557422.1,ENST00000474911.1,ENST00000267484.5,ENST00000342503.4	chr14	60069782:60069841:60069929:60069976:60070569:60070639,	60069930	60069976	60069953	60069957	Frame_Shift_Del	GTAGA	-	p.TLP734fs
LGG	TCGA-RY-A83Z-01	PLG	ENST00000308192.9	chr6	161152082:161152264:161152776:161152925:161155026:161155120,	161152777	161152925	161152785	161152786	Frame_Shift_Del	TT	-	p.F483fs
LGG	TCGA-S9-A6WQ-01	INPP4A	ENST00000409851.3,ENST00000545415.1,ENST00000523221.1,ENST00000409016.4,ENST00000409540.3,ENST00000074304.5,ENST00000409463.1	chr2	99136511:99136617:99137149:99137194:99149839:99149919,	99137150	99137194	99137191	99137191	Frame_Shift_Del	T	-	p.L50fs
LGG	TCGA-S9-A6WQ-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729785	78729786	Frame_Shift_Ins	-	T	p.T711fs
LGG	TCGA-DU-6402-01	NF1	ENST00000495910.2,ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29546022:29546136:29548867:29548947:29550461:29550585,	29548868	29548947	29548901	29548901	Frame_Shift_Del	G	-	p.D559fs
LGG	TCGA-DB-A64V-01	FDPS	ENST00000368356.4	chr1	155278775:155278867:155279579:155279756:155279833:155279996,155278704:155278756:155279579:155279756:155279833:155279996,	155279580	155279756	155279639	155279639	Frame_Shift_Del	G	-	p.W20fs
LGG	TCGA-DB-A64V-01	FDPS	ENST00000491013.1	chr1	155278775:155278867:155279543:155279756:155279833:155279996,155278704:155278756:155279543:155279756:155279833:155279996,	155279544	155279756	155279639	155279639	Frame_Shift_Del	G	-	p.W20fs
LGG	TCGA-P5-A5EU-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76919034	76919035	Frame_Shift_Del	TT	-	p.Q1319fs
LGG	TCGA-P5-A737-01	ZNF444	ENST00000592949.1,ENST00000337080.3	chr19	56657615:56657789:56658258:56658577:56669862:56669971,	56658259	56658577	56658436	56658436	Frame_Shift_Del	G	-	p.E52fs
LGG	TCGA-DB-A4XD-01	TBL1XR1	ENST00000457928.2,ENST00000430069.1,ENST00000422066.1	chr3	176771665:176771706:176782707:176782810:176914908:176914971,176771665:176771706:176782707:176782810:176914127:176914211,176771665:176771706:176782707:176782810:176797614:176797733,176771665:176771706:176782707:176782810:176816253:176816329,	176782708	176782810	176782756	176782756	Frame_Shift_Del	T	-	p.S5fs
LGG	TCGA-DB-A4XD-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937770	76937770	Frame_Shift_Del	T	-	p.K994fs
LGG	TCGA-DU-5874-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749492	33749493	Frame_Shift_Ins	-	A	p.L*185fs
LGG	TCGA-DU-A6S3-01	MPDZ	ENST00000447879.1,ENST00000541718.1,ENST00000536827.1,ENST00000381015.4,ENST00000546205.1,ENST00000319217.7,ENST00000494251.1,ENST00000381022.2	chr9	13205918:13206098:13216772:13216861:13217178:13217293,	13216773	13216861	13216804	13216804	Frame_Shift_Del	C	-	p.G420fs
LGG	TCGA-DU-A6S3-01	DNAI1	ENST00000442556.1,ENST00000242317.4	chr9	34513141:34513189:34514391:34514540:34514637:34514737,	34514392	34514540	34514457	34514458	Frame_Shift_Del	TG	-	p.TV545fs
LGG	TCGA-R8-A6MO-01	SORBS2	ENST00000393528.3	chr4	186556508:186556565:186559232:186559316:186567821:186567936,	186559233	186559316	186559269	186559269	Frame_Shift_Del	C	-	p.W290fs
LGG	TCGA-P5-A5EX-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046885	17046886	Frame_Shift_Ins	-	C	p.P351fs
LGG	TCGA-RY-A843-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412532	76412533	Frame_Shift_Ins	-	A	p.A821fs
LGG	TCGA-RY-A843-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000577880.1	chr18	2747519:2747645:2750040:2750120:2750347:2750505,	2750041	2750120	2750108	2750108	Frame_Shift_Del	T	-	p.V1332fs
LGG	TCGA-FG-A711-01	CYBA	ENST00000261623.3,ENST00000566229.1	chr16	88709947:88709979:88712523:88712605:88713162:88713233,	88712524	88712605	88712527	88712527	Frame_Shift_Del	T	-	p.L123fs
LGG	TCGA-FG-A711-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937737	76937740	Frame_Shift_Del	TTAA	-	p.IK1003fs
LGG	TCGA-DU-7006-01	PIK3R3	ENST00000354242.4,ENST00000425892.1,ENST00000420542.1	chr1	46546313:46546422:46597518:46597628:46598455:46598583,	46597519	46597628	46597617	46597618	Frame_Shift_Ins	-	TGTA	p.-3fs
LGG	TCGA-E1-A7YV-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937602	76937602	Frame_Shift_Del	A	-	p.I1049fs
LGG	TCGA-HT-7881-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
LGG	TCGA-HT-7476-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939347	76939348	Frame_Shift_Del	TT	-	p.K467fs
LGG	TCGA-TM-A7CA-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579420	7579420	Frame_Shift_Del	G	-	p.P89fs
LGG	TCGA-TM-A7CA-01	TMC6	ENST00000322914.3,ENST00000593044.1,ENST00000591436.1,ENST00000322933.4,ENST00000392467.3,ENST00000590602.1	chr17	76109228:76109292:76109628:76109705:76113349:76113428,	76109629	76109705	76109632	76109636	Frame_Shift_Del	CTCCT	-	p.RS783fs
LGG	TCGA-TM-A7CA-01	CEP76	ENST00000262127.2,ENST00000423709.2,ENST00000590143.1	chr18	12680660:12680827:12686260:12686449:12691357:12691486,	12686261	12686449	12686414	12686415	Frame_Shift_Del	AT	-	p.Y323fs
LGG	TCGA-DU-7298-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937745	76937745	Frame_Shift_Del	T	-	p.K1001fs
LGG	TCGA-DH-5140-01	UGGT1	ENST00000259253.6,ENST00000376723.3,ENST00000375990.3	chr2	128937359:128937444:128938463:128938646:128939703:128939864,	128938464	128938646	128938471	128938471	Frame_Shift_Del	T	-	p.I1279fs
LGG	TCGA-DH-5140-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103668	47103705	Frame_Shift_Del	TTTGTTCCCCGCTCATAGGCAGAAGAGGGTGGTGAGAG	-	p.LSPPSSAYERGTK2081fs
LGG	TCGA-DH-5140-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574025	7574025	Frame_Shift_Del	C	-	p.G334fs
LGG	TCGA-DH-5141-01	NRL	ENST00000561028.1	chr14	24550216:24550777:24551676:24552084:24583930:24584219,	24551677	24552084	24551825	24551826	Frame_Shift_Ins	-	G	p.A78fs
LGG	TCGA-FG-5965-02	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
LGG	TCGA-TQ-A7RK-01	RFTN1	ENST00000334133.4,ENST00000432519.1	chr3	16399438:16399554:16411582:16411786:16419224:16419609,	16411583	16411786	16411682	16411685	Frame_Shift_Del	CTGT	-	p.TV310fs
LGG	TCGA-TQ-A7RK-02	RFTN1	ENST00000334133.4,ENST00000432519.1	chr3	16399438:16399554:16411582:16411786:16419224:16419609,	16411583	16411786	16411682	16411685	Frame_Shift_Del	CTGT	-	p.TV310fs
LGG	TCGA-TQ-A7RK-02	ROCK1	ENST00000399799.2	chr18	18572791:18572898:18586311:18586558:18586659:18586751,	18586312	18586558	18586471	18586474	Frame_Shift_Del	TAAT	-	p.IS575fs
LGG	TCGA-P5-A72X-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LGG	TCGA-P5-A72X-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LGG	TCGA-DU-A76K-01	DNAH12	ENST00000495027.1,ENST00000311202.6,ENST00000351747.2,ENST00000389536.4	chr3	57509529:57509611:57528427:57528630:57529923:57530068,	57528428	57528630	57528508	57528509	Frame_Shift_Del	TA	-	p.I30fs
LGG	TCGA-DU-A76K-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
LGG	TCGA-DU-A76K-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400248.2	chr22	32289567:32289737:32293467:32293639:32297727:32297788,	32293468	32293639	32293599	32293599	Frame_Shift_Del	C	-	p.I1445fs
LGG	TCGA-HT-7480-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253745	55253746	Frame_Shift_Ins	-	T	p.R497fs
LGG	TCGA-HT-7480-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64779134	64779134	Frame_Shift_Del	C	-	p.P177fs
LGG	TCGA-CS-4938-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939674	76939674	Frame_Shift_Del	T	-	p.K358fs
LGG	TCGA-DB-A4XC-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
LGG	TCGA-DB-A4XC-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938089	76938092	Frame_Shift_Del	TCTC	-	p.ET886fs
LGG	TCGA-S9-A7J1-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11777841:11778042:11778796:11778935:11780416:11782489,	11778797	11778935	11778832	11778833	Frame_Shift_Del	TT	-	p.SL1861fs
LGG	TCGA-TQ-A7RM-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56363597:56363719:56367672:56367823:56376609:56376788,	56367673	56367823	56367772	56367772	Frame_Shift_Del	T	-	p.F200fs
LGG	TCGA-QH-A870-01	ATP10D	ENST00000504445.1,ENST00000273859.3	chr4	47514525:47514847:47517492:47517687:47525028:47525233,	47517493	47517687	47517508	47517509	Frame_Shift_Del	TT	-	p.YF102fs
LGG	TCGA-QH-A870-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395000	64395000	Frame_Shift_Del	A	-	p.I459fs
LGG	TCGA-QH-A870-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
LGG	TCGA-HT-7477-01	CDKL3	ENST00000523054.1	chr5	133685984:133686118:133695587:133695782:133706688:133706695,	133695588	133695782	133695594	133695594	Frame_Shift_Del	A	-	p.S118fs
LGG	TCGA-DH-A7UV-01	NOTCH2	ENST00000256646.2	chr1	120491036:120491189:120491629:120491749:120493346:120493460,	120491630	120491749	120491682	120491683	Frame_Shift_Del	TT	-	p.K849fs
LGG	TCGA-DH-A7UV-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152049321:152049508:152053482:152053535:152054185:152054388,	152053483	152053535	152053505	152053506	Frame_Shift_Del	TC	-	p.E627fs
LGG	TCGA-DH-A7UV-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938029	76938029	Frame_Shift_Del	G	-	p.R907fs
LGG	TCGA-DH-A7UV-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939607	76939607	Frame_Shift_Del	A	-	p.S381fs
LGG	TCGA-TM-A84F-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57523349:57523455:57524488:57524628:57524909:57525054,	57524489	57524628	57524624	57524625	Frame_Shift_Ins	-	C	p.L274fs
LGG	TCGA-TM-A84F-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62854463:62854526:62854643:62854712:62858767:62858830,	62854644	62854712	62854706	62854707	Frame_Shift_Ins	-	C	p.A868fs
LGG	TCGA-DU-A6S6-01	SLC26A6	ENST00000395550.2,ENST00000489483.1,ENST00000414944.1,ENST00000383733.3,ENST00000496469.1,ENST00000337000.8,ENST00000421649.1,ENST00000358747.6,ENST00000420764.2,ENST00000444531.1,ENST00000480524.1,ENST00000455886.2,ENST00000307364.6	chr3	48667895:48667948:48668039:48668153:48668425:48668559,	48668040	48668153	48668050	48668050	Frame_Shift_Del	C	-	p.G392fs
LGG	TCGA-DU-A6S6-01	ZMYM2	ENST00000382871.2,ENST00000382881.3,ENST00000382874.2,ENST00000382869.3	chr13	20579302:20579379:20580513:20580726:20593686:20593758,	20580514	20580726	20580521	20580522	Frame_Shift_Del	AT	-	p.H436fs
LGG	TCGA-DU-A6S6-01	IGFL2	ENST00000434646.2	chr19	46651038:46651168:46652081:46652294:46663671:46663725,	46652082	46652294	46652260	46652260	Frame_Shift_Del	A	-	p.S6fs
LGG	TCGA-HT-7687-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682290	85682290	Frame_Shift_Del	C	-	p.T120fs
LGG	TCGA-HT-7855-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277079	114277080	Frame_Shift_Del	CT	-	p.DS2435fs
LGG	TCGA-HT-7855-01	PABPC1	ENST00000519100.1,ENST00000318607.5,ENST00000519622.1,ENST00000519596.1,ENST00000519004.1,ENST00000522387.1	chr8	101724609:101724685:101724879:101725017:101725314:101725409,	101724880	101725017	101724994	101724995	Frame_Shift_Ins	-	A	p.R254fs
LGG	TCGA-HT-7855-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918950	76918951	Frame_Shift_Del	CA	-	p.V1347fs
LGG	TCGA-DB-A4XF-01	CAND1	ENST00000544619.1,ENST00000545606.1	chr12	67703680:67703850:67703931:67704096:67705472:67705580,	67703932	67704096	67704094	67704094	Frame_Shift_Del	A	-	p.K1120fs
LGG	TCGA-HT-7875-01	SYCP2L	ENST00000283141.6,ENST00000341041.4	chr6	10942909:10942979:10955348:10955450:10956368:10956475,	10955349	10955450	10955433	10955436	Frame_Shift_Del	AAGA	-	p.EE680fs
LGG	TCGA-HT-7875-01	ZMYM2	ENST00000382871.2,ENST00000382881.3,ENST00000382874.2,ENST00000382869.3	chr13	20567965:20568059:20576989:20577275:20579213:20579379,	20576990	20577275	20577051	20577052	Frame_Shift_Del	TT	-	p.SL303fs
LGG	TCGA-HT-7875-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000560764.1,ENST00000537840.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57524909:57525054:57526240:57526305:57535669:57535713,	57526241	57526305	57526268	57526269	Frame_Shift_Del	CA	-	p.S333fs
LGG	TCGA-HT-7475-01	SULT1C2	ENST00000442801.1	chr2	108910684:108910810:108921029:108921156:108921627:108921722,	108921030	108921156	108921152	108921152	Frame_Shift_Del	A	-	p.G177fs
LGG	TCGA-HT-7475-01	SULT1C2	ENST00000409880.1	chr2	108910684:108910810:108921042:108921156:108921627:108921722,	108921043	108921156	108921152	108921152	Frame_Shift_Del	A	-	p.G177fs
LGG	TCGA-E1-A7YM-01	AFMID	ENST00000588800.1	chr17	76187050:76187141:76198783:76198832:76202026:76202131,	76198784	76198832	76198801	76198801	Frame_Shift_Del	T	-	p.F94fs
LGG	TCGA-DU-7008-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76940037	76940038	Frame_Shift_Ins	-	T	p.S237fs
LGG	TCGA-S9-A7QX-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939883	76939883	Frame_Shift_Del	G	-	p.Q289fs
LGG	TCGA-QH-A6XA-01	UNC5D	ENST00000404895.2,ENST00000287272.2,ENST00000453357.2	chr8	35544062:35544227:35563446:35563479:35579727:35579874,	35563447	35563479	35563469	35563469	Frame_Shift_Del	A	-	p.I313fs
LGG	TCGA-QH-A6XA-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938114	76938114	Frame_Shift_Del	A	-	p.D878fs
LGG	TCGA-KT-A74X-01	NEK3	ENST00000452082.2,ENST00000548127.1,ENST00000258597.5,ENST00000400357.2,ENST00000552973.1,ENST00000551355.1,ENST00000378101.2,ENST00000339406.3	chr13	52722549:52722604:52725280:52725367:52725459:52725527,	52725281	52725367	52725327	52725327	Frame_Shift_Del	A	-	p.Y168fs
LGG	TCGA-TQ-A7RS-01	NFYA	ENST00000353205.5,ENST00000341376.6	chr6	41057942:41058048:41059266:41059433:41060650:41060824,	41059267	41059433	41059406	41059407	Frame_Shift_Ins	-	GTGGTCAA	p.NG229fs
LGG	TCGA-TQ-A7RS-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24833288	24833289	Frame_Shift_Del	AG	-	p.R1380fs
LGG	TCGA-E1-5303-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939929	76939930	Frame_Shift_Ins	-	A	p.F273fs
LGG	TCGA-QH-A65X-01	ENTPD1	ENST00000371207.3,ENST00000543964.1,ENST00000453258.2,ENST00000371205.4,ENST00000539125.1,ENST00000371203.5,ENST00000483213.1	chr10	97604331:97604392:97605113:97605353:97607202:97607256,	97605114	97605353	97605324	97605325	Frame_Shift_Del	CT	-	p.L124fs
LGG	TCGA-E1-A7YD-01	ETNPPL	ENST00000509402.1	chr4	109677573:109677648:109680904:109681064:109681343:109681462,109677597:109677648:109680904:109681064:109683998:109684085,	109680905	109681064	109680921	109680924	Frame_Shift_Del	AACA	-	p.CY106fs
LGG	TCGA-E1-A7YD-01	ETNPPL	ENST00000411864.2	chr4	109677573:109677648:109680904:109681046:109681343:109681462,	109680905	109681046	109680921	109680924	Frame_Shift_Del	AACA	-	p.CY106fs
LGG	TCGA-HT-7608-01	BIRC6	ENST00000421745.2	chr2	32704529:32704685:32706387:32706521:32707496:32707650,	32706388	32706521	32706407	32706407	Frame_Shift_Del	T	-	p.S2476fs
LGG	TCGA-HT-7608-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791696:42791879:42791961:42792127:42793039:42793242,	42791962	42792127	42792020	42792021	Frame_Shift_Del	AG	-	p.K1185fs
LGG	TCGA-DB-5280-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938749	76938765	Frame_Shift_Del	GTCGCCTCAAGGGTGTA	-	p.TTPLRRP661fs
LGG	TCGA-HT-7472-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
LGG	TCGA-HT-7472-01	MKLN1	ENST00000352689.6,ENST00000494785.1,ENST00000458153.1,ENST00000421797.2	chr7	131099403:131099469:131113791:131113904:131122543:131122756,	131113792	131113904	131113796	131113799	Frame_Shift_Del	TGTT	-	p.TV284fs
LGG	TCGA-HT-7472-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937477	76937480	Frame_Shift_Del	TCTC	-	p.EK1090fs
LGG	TCGA-HT-7471-01	RMDN2	ENST00000407257.1,ENST00000234195.3	chr2	38177653:38177738:38178375:38179344:38201182:38201357,	38178376	38179344	38178783	38178783	Frame_Shift_Del	T	-	p.I142fs
LGG	TCGA-VM-A8CH-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938201	76938202	Frame_Shift_Del	AG	-	p.S850fs
LGG	TCGA-HT-7694-01	AGO1	ENST00000373204.4,ENST00000373206.1	chr1	36359274:36359411:36359637:36359772:36359915:36360003,	36359638	36359772	36359738	36359739	Frame_Shift_Del	CT	-	p.DS250fs
LGG	TCGA-HT-7694-01	PTCD3	ENST00000254630.7	chr2	86354283:86354428:86355063:86355114:86357770:86357860,	86355064	86355114	86355071	86355074	Frame_Shift_Del	GCTT	-	p.SL368fs
LGG	TCGA-HT-7694-01	CLIP2	ENST00000395060.1,ENST00000223398.6,ENST00000361545.5	chr7	73791024:73791152:73795135:73795193:73800850:73800927,	73795136	73795193	73795186	73795187	Frame_Shift_Del	TG	-	p.TV824fs
LGG	TCGA-HT-7694-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75676604:75676778:75681992:75682162:75684582:75685156,	75681993	75682162	75682071	75682090	Frame_Shift_Del	ATCTTCATACTGTGATGAGT	-	p.DSSQYED975fs
LGG	TCGA-HT-7854-01	WDR78	ENST00000431318.1,ENST00000371022.3,ENST00000371023.3	chr1	67358959:67359096:67370883:67371058:67390344:67390379,	67370884	67371058	67371036	67371037	Frame_Shift_Ins	-	A	p.KV64fs
LGG	TCGA-HT-7854-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604041	111604042	Frame_Shift_Ins	-	CAGA	p.R373fs
LGG	TCGA-HT-7854-01	NCOR2	ENST00000429285.2,ENST00000461081.1,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1	chr12	124816864:124817010:124817675:124817825:124818969:124819163,124816864:124817013:124817675:124817825:124818969:124819163,	124817676	124817825	124817682	124817683	Frame_Shift_Ins	-	C	p.A2257fs
LGG	TCGA-HT-7854-01	ITSN1	ENST00000444491.1,ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000451686.1,ENST00000381283.3,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35093482:35093575:35094892:35094956:35107348:35107398,	35094893	35094956	35094910	35094910	Frame_Shift_Del	T	-	p.F49fs
LGG	TCGA-DU-A5TW-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937833	76937836	Frame_Shift_Del	TCTT	-	p.KD971fs
LGG	TCGA-DU-6399-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577081	7577099	Frame_Shift_Del	TCCTCTGTGCGCCGGTCTC	-	p.RDRRTEE280fs
LGG	TCGA-DU-6399-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939864	76939864	Frame_Shift_Del	T	-	p.K297fs
LGG	TCGA-R8-A6ML-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
LGG	TCGA-R8-A6ML-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795743	42795744	Frame_Shift_Ins	-	G	p.R1820fs
LGG	TCGA-FG-8189-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000542537.1	chr1	237951287:237951435:237954728:237954815:237955404:237955623,	237954729	237954815	237954771	237954771	Frame_Shift_Del	T	-	p.L4507fs
LGG	TCGA-DU-5851-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939056	76939060	Frame_Shift_Del	ATTTA	-	p.LN563fs
LGG	TCGA-S9-A7R4-01	CEP78	ENST00000376598.2,ENST00000376597.4	chr9	80880287:80880459:80880774:80880822:80881357:80881373,	80880775	80880822	80880816	80880816	Frame_Shift_Del	A	-	p.L614fs
LGG	TCGA-P5-A72W-01	XRRA1	ENST00000530562.1	chr11	74563078:74563127:74618189:74618318:74632258:74632344,	74618190	74618318	74618234	74618235	Frame_Shift_Del	TC	-	p.R239fs
LGG	TCGA-P5-A72W-01	EXOC3L4	ENST00000380069.3	chr14	103570686:103570726:103571074:103571175:103571328:103571409,	103571075	103571175	103571146	103571146	Frame_Shift_Del	C	-	p.C452fs
LGG	TCGA-P5-A72W-01	PICK1	ENST00000466374.1,ENST00000356976.3,ENST00000469819.1,ENST00000424694.1,ENST00000484021.1,ENST00000468288.1,ENST00000435166.1,ENST00000437453.1,ENST00000404072.3	chr22	38453826:38453857:38455240:38455352:38461008:38461137,	38455241	38455352	38455269	38455269	Frame_Shift_Del	A	-	p.T24fs
LGG	TCGA-TQ-A7RV-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938182	76938183	Frame_Shift_Del	TG	-	p.HS855fs
LGG	TCGA-TQ-A7RV-02	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938182	76938183	Frame_Shift_Del	TG	-	p.HS855fs
LGG	TCGA-DH-5142-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70633381	70633382	Frame_Shift_Ins	-	C	p.DG586fs
LGG	TCGA-DB-A4XH-01	NDUFA3	ENST00000419113.1	chr19	54609271:54609318:54610117:54610285:54611746:54611840,	54610118	54610285	54610132	54610135	Frame_Shift_Del	GATG	-	p.DG60fs
LGG	TCGA-E1-A7YW-01	ARHGAP44	ENST00000340825.3,ENST00000580768.1	chr17	12862033:12862214:12877405:12877627:12883374:12883550,	12877406	12877627	12877480	12877480	Frame_Shift_Del	C	-	p.A539fs
LGG	TCGA-E1-A7YW-01	CDK5RAP1	ENST00000427097.1,ENST00000461710.1,ENST00000473997.1,ENST00000482967.1,ENST00000339269.5,ENST00000346416.2,ENST00000357886.4,ENST00000496381.1	chr20	31954664:31954814:31958304:31958435:31960447:31960503,	31958305	31958435	31958332	31958333	Frame_Shift_Ins	-	CC	p.V469fs
LGG	TCGA-E1-A7YW-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937426	76937426	Frame_Shift_Del	A	-	p.S1110fs
LGG	TCGA-DB-A75K-01	FLNC	ENST00000388853.3,ENST00000325888.8,ENST00000346177.6	chr7	128482284:128482428:128482628:128482752:128482847:128482912,	128482629	128482752	128482744	128482745	Frame_Shift_Ins	-	G	p.G794fs
LGG	TCGA-TQ-A7RR-01	EEFSEC	ENST00000254730.6	chr3	127983459:127983624:128060075:128060732:128077059:128077216,	128060076	128060732	128060266	128060266	Frame_Shift_Del	G	-	p.R326fs
LGG	TCGA-TQ-A7RR-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938484	76938484	Frame_Shift_Del	T	-	p.N755fs
LGG	TCGA-CS-6670-01	PTPRZ1	ENST00000449182.1	chr7	121651261:121651363:121659177:121659322:121668605:121668697,	121659178	121659322	121659248	121659249	Frame_Shift_Ins	-	A	p.T1639fs
LGG	TCGA-TQ-A7RG-01	FAM189A2	ENST00000303068.7,ENST00000257515.8,ENST00000455972.1	chr9	72000735:72000863:72003073:72003366:72006516:72006629,	72003074	72003366	72003231	72003231	Frame_Shift_Del	G	-	p.V338fs
LGG	TCGA-S9-A6U5-01	KCNIP2	ENST00000356640.2	chr10	103588831:103588956:103589600:103589654:103590828:103590924,	103589601	103589654	103589642	103589642	Frame_Shift_Del	G	-	p.P61fs
LGG	TCGA-S9-A6U5-01	KCNIP2	ENST00000461105.1,ENST00000355657.2	chr10	103588831:103588956:103589600:103589699:103590828:103590924,	103589601	103589699	103589642	103589642	Frame_Shift_Del	G	-	p.P61fs
LGG	TCGA-S9-A6U5-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677692	88677695	Frame_Shift_Del	GAGA	-	p.RE410fs
LGG	TCGA-S9-A6U5-01	CIC	ENST00000575287.1	chr19	42798324:42798456:42798726:42798887:42798975:42799157,	42798727	42798887	42798857	42798858	Frame_Shift_Del	CT	-	p.L2383fs
LGG	TCGA-S9-A6U5-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42798324:42798456:42798755:42798887:42798975:42799157,	42798756	42798887	42798857	42798858	Frame_Shift_Del	CT	-	p.L2383fs
LGG	TCGA-HT-7680-01	LRRK1	ENST00000284395.5,ENST00000525284.1,ENST00000531270.1,ENST00000388948.3,ENST00000532029.2	chr15	101464807:101464934:101514008:101514172:101523732:101523893,	101514009	101514172	101514014	101514014	Frame_Shift_Del	G	-	p.G8fs
LGG	TCGA-DU-A7TG-01	BMP5	ENST00000370830.3,ENST00000446683.2	chr6	55638846:55639041:55659076:55659225:55684452:55684645,	55659077	55659225	55659164	55659164	Frame_Shift_Del	C	-	p.V249fs
LGG	TCGA-DU-6395-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938777	76938777	Frame_Shift_Del	T	-	p.P657fs
LGG	TCGA-FG-5964-01	CLK1	ENST00000432425.1,ENST00000473565.1,ENST00000409403.2	chr2	201725960:201726189:201726424:201726585:201729286:201729379,	201726425	201726585	201726490	201726493	Frame_Shift_Del	CTTC	-	p.RK73fs
LGG	TCGA-FG-5964-01	PAN2	ENST00000547994.1,ENST00000440411.3,ENST00000547572.1,ENST00000551359.1,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1	chr12	56721314:56721415:56721778:56721856:56722021:56722142,	56721779	56721856	56721813	56721813	Frame_Shift_Del	T	-	p.N206fs
LGG	TCGA-CS-4944-01	KDM4C	ENST00000536108.1,ENST00000428870.2,ENST00000442236.2,ENST00000381309.3,ENST00000381306.3	chr9	7105401:7105500:7128065:7128236:7165237:7165355,7103684:7103870:7128065:7128236:7165237:7165355,	7128066	7128236	7128074	7128075	Frame_Shift_Del	GG	-	p.KA873fs
LGG	TCGA-R8-A6MK-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212517	185212518	Frame_Shift_Ins	-	A	p.F156fs
LGG	TCGA-R8-A6MK-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793215	42793218	Frame_Shift_Del	CAGT	-	p.DS1278fs
LGG	TCGA-FG-5963-02	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.HP1875fs
LGG	TCGA-HW-7489-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938654	76938655	Frame_Shift_Ins	-	T	p.R698fs
LGG	TCGA-FG-8182-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938654	76938655	Frame_Shift_Ins	-	T	p.R698fs
LGG	TCGA-HT-7605-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114069165	114069166	Frame_Shift_Del	AA	-	p.F514fs
LGG	TCGA-HT-7605-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54319086:54319300:54324819:54324957:54325468:54325569,	54324820	54324957	54324903	54324904	Frame_Shift_Del	AT	-	p.H528fs
LGG	TCGA-HT-A4DS-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527568	29527569	Frame_Shift_Del	CT	-	p.NS339fs
LGG	TCGA-P5-A5EW-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939758	76939762	Frame_Shift_Del	TTTCT	-	p.KK329fs
LGG	TCGA-S9-A6WE-01	VWCE	ENST00000301770.6	chr11	61048264:61048707:61049257:61049386:61050260:61050377,61048264:61048707:61049257:61049386:61050264:61050377,	61049258	61049386	61049329	61049329	Frame_Shift_Del	T	-	p.N239fs
LGG	TCGA-TQ-A7RH-01	LRCH2	ENST00000317135.8	chrX	114358507:114358565:114361405:114361456:114364717:114364762,	114361406	114361456	114361427	114361427	Frame_Shift_Del	T	-	p.T590fs
LGG	TCGA-DU-6407-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939340	76939343	Frame_Shift_Del	CTAC	-	p.VD469fs
LGG	TCGA-DU-6407-02	FOXRED1	ENST00000527004.1,ENST00000263578.5	chr11	126139103:126139310:126141331:126141552:126142863:126142974,126139095:126139186:126141331:126141552:126142863:126142974,	126141332	126141552	126141384	126141387	Frame_Shift_Del	TGGA	-	p.PG46fs
LGG	TCGA-DU-6407-02	FOXRED1	ENST00000532101.1	chr11	126139095:126139186:126141114:126141552:126142863:126142974,	126141115	126141552	126141384	126141387	Frame_Shift_Del	TGGA	-	p.PG46fs
LGG	TCGA-DU-6407-02	CPNE9	ENST00000273027.6,ENST00000383832.3,ENST00000383831.3	chr3	9759712:9759894:9760158:9760286:9767632:9767735,	9760159	9760286	9760258	9760258	Frame_Shift_Del	T	-	p.F405fs
LGG	TCGA-DU-6407-02	RFC2	ENST00000493156.2,ENST00000352131.3	chr7	73661044:73661093:73663341:73663448:73664068:73664110,73657475:73657576:73663341:73663448:73664068:73664110,	73663342	73663448	73663399	73663400	Frame_Shift_Ins	-	C	p.P92fs
LGG	TCGA-DU-6407-02	RFC2	ENST00000470266.1	chr7	73661044:73661093:73663341:73663550:73664068:73664110,73657475:73657576:73663341:73663550:73664068:73664110,	73663342	73663550	73663399	73663400	Frame_Shift_Ins	-	C	p.P92fs
LGG	TCGA-TM-A84I-01	AP1M2	ENST00000589348.1	chr19	10683668:10683764:10685092:10685168:10687873:10687907,	10685093	10685168	10685148	10685148	Frame_Shift_Del	A	-	p.I400fs
LGG	TCGA-E1-A7YY-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
LGG	TCGA-W9-A837-01	DBI	ENST00000355857.3,ENST00000535757.1,ENST00000393103.2,ENST00000409094.1,ENST00000535617.1,ENST00000460901.1,ENST00000542275.1,ENST00000311521.4	chr2	120125763:120125881:120128315:120128378:120129820:120129983,	120128316	120128378	120128319	120128319	Frame_Shift_Del	G	-	p.R105fs
LGG	TCGA-W9-A837-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169301	33169301	Frame_Shift_Del	C	-	p.S93fs
LGG	TCGA-F6-A8O4-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939666	76939669	Frame_Shift_Del	TCAA	-	p.IE360fs
LGG	TCGA-RY-A840-01	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49061522:49061827:49062075:49062273:49062971:49063084,	49062076	49062273	49062190	49062190	Frame_Shift_Del	C	-	p.G1863fs
LGG	TCGA-E1-A7YQ-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610666	52610666	Frame_Shift_Del	G	-	p.P1162fs
LGG	TCGA-S9-A7QW-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939556	76939557	Frame_Shift_Ins	-	A	p.V398fs
LGG	TCGA-FG-A4MU-01	KLHDC1	ENST00000554512.1,ENST00000556392.1,ENST00000555704.1,ENST00000359332.2	chr14	50201306:50201379:50206815:50206900:50210470:50210523,	50206816	50206900	50206884	50206885	Frame_Shift_Ins	-	A	p.S322fs
LGG	TCGA-DH-A669-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47084050:47084190:47087976:47088111:47098310:47098980,	47087977	47088111	47088034	47088035	Frame_Shift_Ins	-	TGTA	p.P2347fs
LGG	TCGA-DH-A669-02	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47084050:47084190:47087976:47088111:47098310:47098980,	47087977	47088111	47088034	47088035	Frame_Shift_Ins	-	TGTA	p.P2347fs
LGG	TCGA-DH-A669-02	BRAT1	ENST00000340611.4,ENST00000467558.1,ENST00000469750.1	chr7	2583387:2583596:2584542:2584690:2586957:2587112,	2584543	2584690	2584622	2584622	Frame_Shift_Del	G	-	p.P117fs
LGG	TCGA-DH-A669-02	LGALS3	ENST00000554715.1,ENST00000254301.9	chr14	55595977:55596018:55604087:55604109:55604762:55604831,	55604088	55604109	55604096	55604099	Frame_Shift_Del	CAGA	-	p.AD2fs
LGG	TCGA-DB-A4XG-01	PAICS	ENST00000264221.2,ENST00000505164.1,ENST00000512576.1,ENST00000514888.1,ENST00000399688.3	chr4	57314875:57314989:57316784:57316868:57318037:57318218,	57316785	57316868	57316856	57316857	Frame_Shift_Del	AG	-	p.AE161fs
LGG	TCGA-DB-A4XG-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000584328.1,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29665042:29665157:29665721:29665823:29667522:29667663,	29665722	29665823	29665752	29665755	Frame_Shift_Del	ACTT	-	p.TY2284fs
LGG	TCGA-HT-7688-01	CAD	ENST00000264705.4,ENST00000456311.1,ENST00000403525.1,ENST00000487239.1	chr2	27462019:27462100:27462198:27462339:27462564:27462652,	27462199	27462339	27462334	27462334	Frame_Shift_Del	G	-	p.G1797fs
LGG	TCGA-HT-7688-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845531	63845531	Frame_Shift_Del	A	-	p.K424fs
LGG	TCGA-HT-7688-01	ZSWIM8	ENST00000604754.1,ENST00000603114.1,ENST00000603187.1,ENST00000398706.2,ENST00000412198.1,ENST00000604524.1,ENST00000605216.1,ENST00000604729.1	chr10	75557134:75557363:75557538:75557828:75557987:75558211,	75557539	75557828	75557692	75557693	Frame_Shift_Del	AG	-	p.SG1272fs
LGG	TCGA-KT-A7W1-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
LGG	TCGA-S9-A7R8-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253745	55253746	Frame_Shift_Ins	-	T	p.R497fs
LGG	TCGA-S9-A7R8-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938331	76938331	Frame_Shift_Del	T	-	p.K807fs
LGG	TCGA-S9-A7QZ-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265962	75265963	Frame_Shift_Del	CA	-	p.S1321fs
LGG	TCGA-S9-A7QZ-01	CIC	ENST00000572681.2,ENST00000160740.3	chr19	42796237:42796359:42796451:42796618:42796717:42796749,42796237:42796359:42796451:42796618:42796720:42797011,	42796452	42796618	42796461	42796462	Frame_Shift_Del	TG	-	p.YV1915fs
LGG	TCGA-S9-A7QZ-01	LAMP2	ENST00000540603.1,ENST00000486593.1,ENST00000434600.2,ENST00000538785.1,ENST00000371335.4,ENST00000200639.4	chrX	119576453:119576517:119580159:119580282:119581695:119581880,	119580160	119580282	119580172	119580173	Frame_Shift_Del	AA	-	p.F284fs
LGG	TCGA-FG-A87Q-01	MRPL35	ENST00000409180.1,ENST00000254644.8,ENST00000337109.4	chr2	86433228:86433418:86434305:86434450:86437602:86437736,	86434306	86434450	86434352	86434352	Frame_Shift_Del	C	-	p.L94fs
LGG	TCGA-HT-A5R7-01	GKAP1	ENST00000376371.2	chr9	86368190:86368274:86383732:86383885:86395296:86395319,	86383733	86383885	86383805	86383821	Frame_Shift_Del	AATAAGAATTTTATGAA	-	p.VHKILI217fs
LGG	TCGA-DU-7299-01	ZC3H7A	ENST00000575041.1	chr16	11862170:11862357:11864638:11864843:11868091:11868148,	11864639	11864843	11864798	11864799	Frame_Shift_Del	GA	-	p.SP316fs
LGG	TCGA-DU-7299-01	SLC35A2	ENST00000247138.5	chrX	48760537:48760742:48762022:48762759:48763668:48763820,	48762023	48762759	48762551	48762552	Frame_Shift_Del	GA	-	p.S213fs
LGG	TCGA-DU-A76R-01	HDX	ENST00000373177.2	chrX	83723935:83724583:83730258:83730405:83743031:83743140,	83730259	83730405	83730327	83730331	Frame_Shift_Del	TTTGA	-	p.NQS25fs
LGG	TCGA-DH-A7US-01	CFL2	ENST00000298159.6	chr14	35182265:35182342:35182459:35182767:35183743:35183783,	35182460	35182767	35182753	35182754	Frame_Shift_Del	TG	-	p.T6fs
LGG	TCGA-DH-A7US-01	CFL2	ENST00000554470.1	chr14	35182265:35182342:35182713:35182767:35183743:35183783,	35182714	35182767	35182753	35182754	Frame_Shift_Del	TG	-	p.T6fs
LGG	TCGA-DH-A7US-01	CFL2	ENST00000422678.2	chr14	35182265:35182342:35182602:35182767:35183743:35183783,	35182603	35182767	35182753	35182754	Frame_Shift_Del	TG	-	p.T6fs
LGG	TCGA-P5-A5EZ-01	CDH13	ENST00000268613.10,ENST00000569454.1,ENST00000566620.1,ENST00000539548.2	chr16	83158989:83159106:83250949:83251102:83378466:83378611,	83250950	83251102	83251008	83251009	Frame_Shift_Del	AT	-	p.D181fs
LGG	TCGA-P5-A5EZ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578213	Frame_Shift_Del	A	-	p.F212fs
LGG	TCGA-DU-7010-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322258	27322258	Frame_Shift_Del	G	-	p.Q1235fs
LGG	TCGA-DU-7010-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
LGG	TCGA-E1-5302-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577101	7577101	Frame_Shift_Del	C	-	p.G279fs
LGG	TCGA-E1-5319-01	TYK2	ENST00000531836.1,ENST00000525621.1,ENST00000264818.6,ENST00000529370.1	chr19	10478839:10478878:10478970:10479094:10488889:10489082,	10478971	10479094	10479066	10479067	Frame_Shift_Del	AA	-	p.F74fs
LGG	TCGA-DU-7301-01	NOTCH2	ENST00000256646.2	chr1	120491036:120491189:120491629:120491749:120493346:120493460,	120491630	120491749	120491679	120491680	Frame_Shift_Del	CT	-	p.E850fs
LGG	TCGA-DU-7301-01	SLC7A11	ENST00000280612.5	chr4	139140419:139140519:139144352:139144478:139153420:139153536,	139144353	139144478	139144383	139144386	Frame_Shift_Del	TAAT	-	p.II205fs
LGG	TCGA-DU-7301-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938271	76938272	Frame_Shift_Del	TT	-	p.K826fs
LGG	TCGA-TM-A7C5-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10084457:10084547:10085163:10085729:10090658:10090779,	10085164	10085729	10085617	10085617	Frame_Shift_Del	G	-	p.M506fs
LGG	TCGA-DB-5279-01	ZCCHC9	ENST00000380199.5,ENST00000438268.2,ENST00000505860.1,ENST00000510227.1,ENST00000407610.3,ENST00000506458.1,ENST00000254037.2,ENST00000507402.1	chr5	80604764:80604857:80607029:80607098:80608362:80608433,	80607030	80607098	80607067	80607070	Frame_Shift_Del	AAAG	-	p.LK222fs
LGG	TCGA-TM-A84C-01	ADAMTS2	ENST00000274609.5,ENST00000251582.7	chr5	178580491:178580624:178581049:178581193:178581814:178581920,	178581050	178581193	178581188	178581188	Frame_Shift_Del	C	-	p.G415fs
LGG	TCGA-HT-7884-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577076	7577077	Frame_Shift_Ins	-	C	p.S288fs
LGG	TCGA-HT-7884-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
LGG	TCGA-HT-7884-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939673	76939674	Frame_Shift_Ins	-	T	p.ND358fs
LGG	TCGA-FG-A87N-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331664	85331665	Frame_Shift_Ins	-	A	p.*47fs
LGG	TCGA-FG-A87N-01	BEND7	ENST00000396898.2,ENST00000396900.2,ENST00000341083.3,ENST00000378605.3	chr10	13522898:13523124:13534610:13534876:13538765:13538888,	13534611	13534876	13534788	13534788	Frame_Shift_Del	T	-	p.K168fs
LGG	TCGA-P5-A77X-01	USP28	ENST00000537642.1	chr11	113702641:113702715:113704141:113704279:113711319:113711479,	113704142	113704279	113704275	113704276	Frame_Shift_Del	TT	-	p.K209fs
LGG	TCGA-P5-A77X-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220737	29220740	Frame_Shift_Del	AAAG	-	p.TK1622fs
LGG	TCGA-P5-A77X-01	MATK	ENST00000585778.1,ENST00000310132.6	chr19	3784822:3784882:3785061:3785284:3786166:3786280,	3785062	3785284	3785085	3785086	Frame_Shift_Del	CA	-	p.CD16fs
LGG	TCGA-HW-A5KJ-01	SZT2	ENST00000460536.1,ENST00000562955.1,ENST00000372442.1	chr1	43911849:43911930:43912012:43912087:43912625:43912839,	43912013	43912087	43912030	43912033	Frame_Shift_Del	CAAA	-	p.VK2948fs
LGG	TCGA-HW-A5KJ-01	ARHGEF39	ENST00000378395.2,ENST00000490638.1,ENST00000378387.3	chr9	35662508:35662738:35662942:35663071:35663318:35663389,	35662943	35663071	35663036	35663037	Frame_Shift_Del	CT	-	p.RV193fs
LGG	TCGA-HW-A5KK-01	TSACC	ENST00000466306.1,ENST00000481479.1,ENST00000470342.1	chr1	156309525:156309582:156314370:156314499:156316558:156316781,156309525:156309582:156314370:156314499:156316569:156316783,	156314371	156314499	156314492	156314492	Frame_Shift_Del	G	-	p.L52fs
LGG	TCGA-HW-A5KK-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95233957	95233961	Frame_Shift_Del	TGGAC	-	p.SP503fs
LGG	TCGA-HW-A5KK-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559113	Frame_Shift_Del	G	-	p.P1074fs
LGG	TCGA-E1-A7Z6-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939469	76939470	Frame_Shift_Del	TC	-	p.EK426fs
LGG	TCGA-CS-6666-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76919037	76919038	Frame_Shift_Ins	-	T	p.T1318fs
LGG	TCGA-DU-7007-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182564	59182565	Frame_Shift_Del	CT	-	p.E665fs
LGG	TCGA-S9-A6U6-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918997	76918998	Frame_Shift_Ins	-	A	p.E1332fs
LGG	TCGA-HT-7882-01	FBXW10	ENST00000308799.4	chr17	18673239:18673398:18675724:18675996:18681790:18682661,	18675725	18675996	18675863	18675866	Frame_Shift_Del	TCTC	-	p.IL744fs
LGG	TCGA-QH-A65S-01	SETMAR	ENST00000358950.4	chr3	4345054:4345210:4355330:4355445:4357895:4358096,4354581:4354913:4355330:4355445:4357895:4358096,4345296:4345552:4355330:4355445:4357895:4358096,	4355331	4355445	4355408	4355409	Frame_Shift_Ins	-	T	p.L328fs
LGG	TCGA-QH-A65S-01	SETMAR	ENST00000413809.1	chr3	4354581:4354913:4355350:4355445:4357895:4358096,	4355351	4355445	4355408	4355409	Frame_Shift_Ins	-	T	p.L328fs
LGG	TCGA-QH-A65S-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573991	7573992	Frame_Shift_Ins	-	A	p.KG345fs
LGG	TCGA-QH-A65S-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918915	76918915	Frame_Shift_Del	T	-	p.K1359fs
LGG	TCGA-HT-8012-01	PMPCB	ENST00000453466.1,ENST00000444457.1,ENST00000420236.2,ENST00000428154.1,ENST00000249269.4,ENST00000443722.1,ENST00000498530.1	chr7	102944857:102944937:102948042:102948155:102949398:102949542,	102948043	102948155	102948108	102948109	Frame_Shift_Del	AA	-	p.K268fs
LGG	TCGA-HT-8012-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793215	42793218	Frame_Shift_Del	CAGT	-	p.DS1278fs
LGG	TCGA-HT-8012-01	CIC	ENST00000572681.2,ENST00000160740.3	chr19	42796237:42796359:42796451:42796618:42796717:42796749,42796237:42796359:42796451:42796618:42796720:42797011,	42796452	42796618	42796554	42796555	Frame_Shift_Del	TG	-	p.SV1946fs
LGG	TCGA-S9-A7IY-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793116	42793116	Frame_Shift_Del	T	-	p.C1245fs
LGG	TCGA-CS-4943-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LGG	TCGA-E1-A7YL-01	ZNF608	ENST00000505686.1	chr5	123979203:123979376:123979936:123980354:123985302:123985390,	123979937	123980354	123980270	123980273	Frame_Shift_Del	TCTC	-	p.EK1263fs
LGG	TCGA-E1-A7Z4-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578214	Frame_Shift_Del	AA	-	p.F212fs
LGG	TCGA-E1-A7Z4-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LGG	TCGA-QH-A6X4-01	CCDC173	ENST00000447353.1	chr2	170505691:170505856:170506838:170507031:170510584:170510724,	170506839	170507031	170506899	170506902	Frame_Shift_Del	TCTT	-	p.ER363fs
LGG	TCGA-CS-5394-01	CIC	ENST00000575287.1	chr19	42798324:42798456:42798726:42798887:42798975:42799157,	42798727	42798887	42798786	42798787	Frame_Shift_Ins	-	A	p.R2359fs
LGG	TCGA-CS-5394-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42798324:42798456:42798755:42798887:42798975:42799157,	42798756	42798887	42798786	42798787	Frame_Shift_Ins	-	A	p.R2359fs
LGG	TCGA-DU-6401-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939673	76939674	Frame_Shift_Ins	-	T	p.ND358fs
LGG	TCGA-E1-A7Z2-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LGG	TCGA-DB-A64U-01	FBXO11	ENST00000434234.1	chr2	48016460:48016579:48035132:48035386:48035467:48035566,	48035133	48035386	48035296	48035297	Frame_Shift_Del	AG	-	p.S915fs
LGG	TCGA-TM-A84L-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578250	7578250	Frame_Shift_Del	T	-	p.N200fs
LGG	TCGA-DU-A6S8-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128028911:128029029:128030440:128030537:128036748:128036951,	128030441	128030537	128030454	128030454	Frame_Shift_Del	A	-	p.I541fs
LGG	TCGA-DB-5276-01	TTYH3	ENST00000407643.1	chr7	2686775:2686887:2687051:2687272:2687592:2687688,2686775:2686887:2687051:2687272:2689200:2689273,	2687052	2687272	2687233	2687234	Frame_Shift_Ins	-	G	p.G196fs
LGG	TCGA-DB-5276-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939181	76939184	Frame_Shift_Del	AGGA	-	p.SS522fs
LGG	TCGA-HT-7676-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76854879:76855049:76855200:76855289:76855902:76856033,	76855201	76855289	76855230	76855230	Frame_Shift_Del	G	-	p.S1919fs
LGG	TCGA-E1-A7YH-01	TMOD2	ENST00000249700.4,ENST00000435126.2	chr15	52058569:52058764:52060458:52060615:52065908:52066031,	52060459	52060615	52060571	52060574	Frame_Shift_Del	AGAA	-	p.QK80fs
LGG	TCGA-IK-8125-01	HFM1	ENST00000430465.1	chr1	91781696:91781741:91781947:91782033:91784634:91784766,91781696:91781741:91781947:91782033:91784849:91784947,	91781948	91782033	91781979	91781980	Frame_Shift_Ins	-	T	p.R956fs
LGG	TCGA-DU-7300-01	EPC2	ENST00000258484.6	chr2	149528612:149528956:149539212:149539349:149541165:149541325,	149539213	149539349	149539217	149539218	Frame_Shift_Del	AG	-	p.TG575fs
LGG	TCGA-DU-7300-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589623	67589624	Frame_Shift_Del	AT	-	p.EY462fs
LGG	TCGA-DU-7300-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965332	123965333	Frame_Shift_Del	TT	-	p.F528fs
LGG	TCGA-S9-A6WO-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938678	76938679	Frame_Shift_Del	TT	-	p.K690fs
LGG	TCGA-S9-A6U0-01	RCHY1	ENST00000514589.1,ENST00000512706.1,ENST00000505514.1,ENST00000380840.2,ENST00000513083.1,ENST00000505105.1,ENST00000451788.1,ENST00000513257.1,ENST00000324439.5,ENST00000507014.1	chr4	76417120:76417143:76419310:76419389:76434029:76434145,	76419311	76419389	76419364	76419364	Frame_Shift_Del	G	-	p.H118fs
LGG	TCGA-P5-A735-01	KIFC1	ENST00000428849.2	chr6	33371505:33371906:33372628:33373408:33373972:33374141,	33372629	33373408	33372952	33372953	Frame_Shift_Del	GA	-	p.LS360fs
LGG	TCGA-HT-A74K-01	PTGFRN	ENST00000393203.2	chr1	117484336:117484705:117487300:117487714:117491813:117492194,	117487301	117487714	117487361	117487361	Frame_Shift_Del	G	-	p.R160fs
LGG	TCGA-HT-A74K-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
LGG	TCGA-HT-A74K-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682289	85682290	Frame_Shift_Ins	-	C	p.P120fs
LGG	TCGA-S9-A6WN-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705894	35705894	Frame_Shift_Del	A	-	p.A878fs
LGG	TCGA-HT-A618-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939387	76939387	Frame_Shift_Del	T	-	p.K455fs
LGG	TCGA-DU-A6S7-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551407	165551408	Frame_Shift_Del	TC	-	p.D832fs
LGG	TCGA-DU-A6S7-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551407	165551408	Frame_Shift_Del	TC	-	p.D832fs
LGG	TCGA-DU-A6S7-01	EMID1	ENST00000404820.3,ENST00000334018.6,ENST00000488820.2,ENST00000433143.1,ENST00000487477.1	chr22	29629602:29629655:29630125:29630188:29630293:29630338,	29630126	29630188	29630137	29630137	Frame_Shift_Del	C	-	p.G326fs
LGG	TCGA-S9-A6U1-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937477	76937480	Frame_Shift_Del	TCTC	-	p.EK1090fs
LGG	TCGA-IK-7675-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46455023:46455178:46456398:46456587:46465037:46465148,	46456399	46456587	46456428	46456429	Frame_Shift_Ins	-	GGTTATGGGG	p.G931fs
LGG	TCGA-IK-7675-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937611	76937615	Frame_Shift_Del	CTTTT	-	p.KS1045fs
LGG	TCGA-VM-A8C8-01	UCK1	ENST00000372215.4,ENST00000372210.3,ENST00000372211.3,ENST00000494584.1	chr9	134401331:134401364:134404330:134404425:134404514:134404544,	134404331	134404425	134404363	134404363	Frame_Shift_Del	C	-	p.V191fs
LGG	TCGA-S9-A7R7-01	MIB2	ENST00000506488.1,ENST00000378710.3,ENST00000378712.1,ENST00000505820.2,ENST00000357210.4,ENST00000378708.1,ENST00000464570.1,ENST00000360522.4,ENST00000520777.1,ENST00000487053.1,ENST00000489635.1,ENST00000479659.1,ENST00000504599.1,ENST00000511502.1,ENST00000473511.1,ENST00000514234.1,ENST00000355826.5,ENST00000518681.1	chr1	1563652:1563779:1563868:1564102:1564512:1564543,	1563869	1564102	1564066	1564067	Frame_Shift_Ins	-	G	p.AG780fs
LGG	TCGA-S9-A7R7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577105	7577105	Frame_Shift_Del	G	-	p.P278fs
LGG	TCGA-E1-5307-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1,ENST00000380427.1	chr9	19357962:19358158:19360241:19360487:19361843:19361961,	19360242	19360487	19360274	19360274	Frame_Shift_Del	T	-	p.P919fs
LGG	TCGA-DU-7014-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6412859	6412860	Frame_Shift_Ins	-	A	p.T189fs
LGG	TCGA-DU-7014-01	ITPKC	ENST00000263370.2	chr19	41231244:41231344:41235106:41235320:41239064:41239269,	41235107	41235320	41235209	41235209	Frame_Shift_Del	T	-	p.V453fs
LGG	TCGA-S9-A7IX-01	RPL24	ENST00000464595.1,ENST00000394077.3	chr3	101399939:101400059:101401272:101401336:101401614:101401643,	101401273	101401336	101401316	101401316	Frame_Shift_Del	T	-	p.K117fs
LGG	TCGA-FG-A60K-01	CIC	ENST00000575287.1	chr19	42798324:42798456:42798726:42798887:42798975:42799157,	42798727	42798887	42798816	42798817	Frame_Shift_Ins	-	GCGG	p.P2369fs
LGG	TCGA-FG-A60K-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42798324:42798456:42798755:42798887:42798975:42799157,	42798756	42798887	42798816	42798817	Frame_Shift_Ins	-	GCGG	p.P2369fs
LGG	TCGA-HT-7479-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28117008:28117068:28171272:28171400:28196929:28197038,	28171273	28171400	28171297	28171297	Frame_Shift_Del	A	-	p.F685fs
LGG	TCGA-HT-7616-01	BNIP1	ENST00000231668.9,ENST00000352523.6	chr5	172573868:172573961:172578568:172578697:172581324:172581416,	172578569	172578697	172578611	172578611	Frame_Shift_Del	T	-	p.F76fs
LGG	TCGA-HT-7616-01	ASB6	ENST00000277458.4,ENST00000450050.2	chr9	132400851:132400938:132401480:132401589:132401680:132401787,	132401481	132401589	132401579	132401580	Frame_Shift_Del	CT	-	p.S139fs
LGG	TCGA-HT-7616-01	APPBP2	ENST00000083182.3,ENST00000590244.1	chr17	58556522:58556632:58571826:58571978:58577759:58577848,	58571827	58571978	58571849	58571849	Frame_Shift_Del	G	-	p.A119fs
LGG	TCGA-P5-A736-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384893	124384893	Frame_Shift_Del	T	-	p.K118fs
LGG	TCGA-HT-8110-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96044604:96044722:96053264:96053396:96058135:96058426,	96053265	96053396	96053387	96053387	Frame_Shift_Del	T	-	p.S1720fs
LGG	TCGA-HT-7684-01	USP32	ENST00000588898.1,ENST00000590133.1,ENST00000300896.4,ENST00000393003.3	chr17	58372043:58372162:58378959:58379065:58422841:58422969,	58378960	58379065	58378974	58378975	Frame_Shift_Del	TC	-	p.E94fs
LGG	TCGA-TQ-A7RU-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
LGG	TCGA-TM-A84J-01	DNM1	ENST00000372923.3,ENST00000393594.3,ENST00000486160.1,ENST00000475805.1,ENST00000441149.2,ENST00000341179.7	chr9	130981327:130981531:130982266:130982365:130982459:130982620,	130982267	130982365	130982298	130982298	Frame_Shift_Del	G	-	p.L207fs
LGG	TCGA-QH-A6CZ-01	CAPN12	ENST00000597716.1	chr19	39224342:39224421:39224781:39224844:39224958:39225025,39224342:39224580:39224781:39224844:39224958:39225025,	39224782	39224844	39224801	39224801	Frame_Shift_Del	C	-	p.G620fs
LGG	TCGA-QH-A6X3-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579319	7579323	Frame_Shift_Del	GTCAC	-	p.VT122fs
LGG	TCGA-QH-A6X3-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937611	76937615	Frame_Shift_Del	CTTTT	-	p.KS1045fs
LGG	TCGA-HT-7858-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939540	76939540	Frame_Shift_Del	T	-	p.K404fs
LGG	TCGA-DB-5270-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939371	76939372	Frame_Shift_Ins	-	T	p.I459fs
LGG	TCGA-DU-8158-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.S247fs
LGG	TCGA-DU-8158-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699512	30699513	Frame_Shift_Del	TA	-	p.L456fs
LGG	TCGA-DU-8161-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093068	160093069	Frame_Shift_Ins	-	C	p.H82fs
LGG	TCGA-HT-7469-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939510	76939511	Frame_Shift_Del	AA	-	p.L413fs
LGG	TCGA-DB-A75L-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693722	Frame_Shift_Del	T	-	p.S690fs
LGG	TCGA-DU-A7TJ-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LGG	TCGA-E1-A7YK-01	SLC15A3	ENST00000227880.3,ENST00000541505.1	chr11	60711160:60711308:60714003:60714293:60718465:60718838,	60714004	60714293	60714213	60714214	Frame_Shift_Ins	-	GACA	p.-212fs
LGG	TCGA-DB-5275-01	RECQL4	ENST00000532237.1,ENST00000532269.1,ENST00000428558.2	chr8	145740319:145740426:145740533:145740626:145740709:145740841,145740319:145740456:145740533:145740626:145740709:145740837,	145740534	145740626	145740580	145740580	Frame_Shift_Del	T	-	p.Q479fs
LGG	TCGA-DB-5275-01	API5	ENST00000420461.2,ENST00000378852.3,ENST00000534600.1,ENST00000531273.1,ENST00000455725.2	chr11	43344979:43345186:43348056:43348161:43349338:43349428,	43348057	43348161	43348086	43348087	Frame_Shift_Del	AT	-	p.TY260fs
LGG	TCGA-DB-5275-01	GRAMD1B	ENST00000529750.1,ENST00000534764.1,ENST00000532581.1,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123474133:123474249:123476029:123476186:123477316:123477506,	123476030	123476186	123476150	123476153	Frame_Shift_Del	ACTA	-	p.TL286fs
LGG	TCGA-E1-A7YJ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086787	109086790	Frame_Shift_Del	CAAA	-	p.VK334fs
LGG	TCGA-E1-A7YJ-01	NBEAL2	ENST00000383740.2,ENST00000450053.3	chr3	47040206:47040369:47040448:47040607:47040804:47040964,	47040449	47040607	47040555	47040555	Frame_Shift_Del	C	-	p.A1164fs
LGG	TCGA-E1-A7YJ-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102676161	102676162	Frame_Shift_Del	GA	-	p.E552fs
LGG	TCGA-FG-A60J-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
LGG	TCGA-DU-6404-02	PSME4	ENST00000404125.1,ENST00000389993.3	chr2	54147329:54147487:54148025:54148241:54149653:54149721,	54148026	54148241	54148051	54148051	Frame_Shift_Del	G	-	p.P747fs
LGG	TCGA-HT-A619-01	TSPAN32	ENST00000381121.3	chr11	2337458:2337542:2337805:2337897:2338573:2338755,2337458:2337542:2337805:2337897:2339092:2339154,	2337806	2337897	2337873	2337874	Frame_Shift_Ins	-	G	p.R232fs
LGG	TCGA-CS-6665-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577105	7577105	Frame_Shift_Del	G	-	p.P278fs
LGG	TCGA-CS-6665-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891806	2891806	Frame_Shift_Del	C	-	p.P561fs
LGG	TCGA-DU-7306-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986119	36986120	Frame_Shift_Ins	-	G	p.W946fs
LGG	TCGA-HT-7873-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573996	7574003	Frame_Shift_Del	AGCTCTCG	-	p.REL342fs
LGG	TCGA-HT-7873-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938029	76938029	Frame_Shift_Del	G	-	p.R907fs
LGG	TCGA-HW-7490-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070598	197070599	Frame_Shift_Del	TC	-	p.QK2594fs
LGG	TCGA-HW-7490-01	CYP3A7	ENST00000336374.2,ENST00000477357.1	chr7	99311091:99311158:99312177:99312305:99313380:99313529,	99312178	99312305	99312223	99312224	Frame_Shift_Del	TT	-	p.K251fs
LGG	TCGA-HW-7490-01	UHRF2	ENST00000276893.5,ENST00000468435.2	chr9	6493825:6493932:6497197:6497360:6498017:6498150,	6497198	6497360	6497275	6497278	Frame_Shift_Del	CAGT	-	p.PV561fs
LGG	TCGA-HW-7490-01	BTBD1	ENST00000379403.2,ENST00000261721.4	chr15	83710479:83710677:83718824:83718930:83725140:83725231,	83718825	83718930	83718894	83718895	Frame_Shift_Del	AA	-	p.LC198fs
LGG	TCGA-HW-7490-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918976	76918977	Frame_Shift_Del	TA	-	p.HR1338fs
LGG	TCGA-S9-A89V-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527526	29527527	Frame_Shift_Ins	-	A	p.T326fs
LGG	TCGA-DU-A76O-01	SNRPD2	ENST00000585392.1	chr19	46190720:46190985:46191644:46191724:46195144:46195146,	46191645	46191724	46191718	46191721	Frame_Shift_Del	TGAC	-	p.VK36fs
LGG	TCGA-DU-A76O-01	SNRPD2	ENST00000588301.1	chr19	46190720:46190985:46191644:46191824:46195144:46195146,	46191645	46191824	46191718	46191721	Frame_Shift_Del	TGAC	-	p.VK36fs
LGG	TCGA-CS-5390-01	APPL1	ENST00000288266.3	chr3	57301769:57301820:57302425:57302515:57303568:57307496,	57302426	57302515	57302495	57302498	Frame_Shift_Del	AAAC	-	p.KQ657fs
LGG	TCGA-DU-8163-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
LGG	TCGA-WY-A858-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918921	76918921	Frame_Shift_Del	T	-	p.K1357fs
LGG	TCGA-HT-7879-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577150	7577151	Frame_Shift_Del	TT	-	p.N263fs
LGG	TCGA-HT-7879-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938001	76938001	Frame_Shift_Del	G	-	p.A916fs
LGG	TCGA-DH-A66B-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144886215:144886326:144886737:144886995:144887103:144887184,	144886738	144886995	144886879	144886882	Frame_Shift_Del	GGGA	-	p.PP955fs
LGG	TCGA-DH-A66B-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576886	7576887	Frame_Shift_Ins	-	T	p.K320fs
LGG	TCGA-DH-A66B-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938097	76938100	Frame_Shift_Del	TCTT	-	p.QE883fs
LGG	TCGA-S9-A89Z-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577049	7577049	Frame_Shift_Del	G	-	p.H297fs
LGG	TCGA-DU-6542-01	ARHGAP22	ENST00000417247.2,ENST00000249601.4,ENST00000417912.2,ENST00000374172.1,ENST00000435790.2,ENST00000374170.1,ENST00000460425.1	chr10	49654600:49654662:49658303:49659183:49661346:49661468,	49658304	49659183	49658514	49658514	Frame_Shift_Del	G	-	p.P553fs
LGG	TCGA-VM-A8CA-01	CNKSR1	ENST00000482227.1,ENST00000528281.1,ENST00000361530.6,ENST00000531191.1,ENST00000374253.5	chr1	26511075:26511103:26511504:26511677:26513658:26513732,	26511505	26511677	26511516	26511517	Frame_Shift_Ins	-	T	p.A125fs
LGG	TCGA-VM-A8CA-01	GLG1	ENST00000205061.5,ENST00000447066.2	chr16	74485924:74486029:74487068:74487232:74490546:74490653,	74487069	74487232	74487225	74487225	Frame_Shift_Del	G	-	p.P1127fs
LGG	TCGA-HT-A61B-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174270	105174271	Frame_Shift_Ins	-	G	p.G556fs
LGG	TCGA-HT-A61B-01	GSPT1	ENST00000565267.1,ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11980633:11980788:11981426:11981607:11984918:11984996,	11981427	11981607	11981588	11981589	Frame_Shift_Ins	-	T	p.H266fs
LGG	TCGA-QH-A6X8-01	SUPT3H	ENST00000371460.1,ENST00000371461.2	chr6	45073658:45073743:45289532:45289628:45290615:45290653,	45289533	45289628	45289563	45289563	Frame_Shift_Del	T	-	p.N35fs
LGG	TCGA-DU-A7TB-01	CCDC146	ENST00000474733.1	chr7	76911908:76912102:76916114:76916172:76916756:76916894,	76916115	76916172	76916122	76916122	Frame_Shift_Del	A	-	p.Q719fs
LGG	TCGA-DU-A7TB-01	CCDC146	ENST00000461259.1,ENST00000415740.2,ENST00000285871.4,ENST00000431197.1	chr7	76911908:76912102:76916114:76916243:76916756:76916894,	76916115	76916243	76916122	76916122	Frame_Shift_Del	A	-	p.Q719fs
LGG	TCGA-P5-A5EV-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390354	45390355	Frame_Shift_Ins	-	C	p.T28fs
LGG	TCGA-HT-7689-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939638	76939639	Frame_Shift_Ins	-	T	p.C370fs
LGG	TCGA-S9-A6WL-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37235753:37235991:37240983:37241163:37246951:37247020,	37240984	37241163	37241030	37241033	Frame_Shift_Del	CTCT	-	p.ES1412fs
LGG	TCGA-S9-A6WL-01	TRIM73	ENST00000430211.1,ENST00000323819.3	chr7	75025029:75025084:75028199:75028616:75032927:75033023,	75028200	75028616	75028510	75028510	Frame_Shift_Del	T	-	p.L98fs
LGG	TCGA-S9-A6WL-01	HAO1	ENST00000378789.3	chr20	7863627:7864310:7866167:7866237:7866352:7866511,	7866168	7866237	7866234	7866234	Frame_Shift_Del	C	-	p.E326fs
LGG	TCGA-HT-8105-01	TCF12	ENST00000438423.2,ENST00000561346.1,ENST00000559609.1,ENST00000267811.5,ENST00000557843.1,ENST00000452095.2,ENST00000560887.1,ENST00000333725.5	chr15	57458599:57458664:57484355:57484491:57489970:57490023,	57484356	57484491	57484478	57484479	Frame_Shift_Del	CT	-	p.DS171fs
LGG	TCGA-HT-8105-01	WDR90	ENST00000549091.1,ENST00000548844.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1,ENST00000552943.1	chr16	708895:709011:709085:709126:709244:709376,	709086	709126	709106	709106	Frame_Shift_Del	C	-	p.A1011fs
LGG	TCGA-P5-A733-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
LGG	TCGA-P5-A733-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784396	135784399	Frame_Shift_Del	TTCT	-	p.KE265fs
LGG	TCGA-P5-A733-01	PI4KA	ENST00000477245.1,ENST00000572273.1,ENST00000399213.2,ENST00000414196.3,ENST00000255882.6	chr22	21063583:21063667:21064195:21064285:21064986:21065146,	21064196	21064285	21064202	21064202	Frame_Shift_Del	A	-	p.L2057fs
LGG	TCGA-P5-A733-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937833	76937836	Frame_Shift_Del	TCTT	-	p.KD971fs
LGG	TCGA-P5-A5ET-01	MYO6	ENST00000430435.1	chr6	76602246:76602407:76604530:76604557:76604947:76604977,	76604531	76604557	76604544	76604544	Frame_Shift_Del	C	-	p.P1042fs
LGG	TCGA-P5-A5ET-01	DOK2	ENST00000523932.1,ENST00000276420.4	chr8	21768183:21768368:21769411:21769499:21769739:21770021,	21769412	21769499	21769438	21769438	Frame_Shift_Del	T	-	p.N136fs
LGG	TCGA-FG-A6IZ-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
LGG	TCGA-FG-A6IZ-01	DNM1L	ENST00000549701.1,ENST00000381000.4,ENST00000434676.2,ENST00000358214.5,ENST00000549926.1,ENST00000547312.1,ENST00000548671.1,ENST00000266481.6,ENST00000452533.2,ENST00000553257.1,ENST00000551476.1	chr12	32854348:32854496:32861086:32861158:32863862:32863937,32860300:32860347:32861086:32861158:32863862:32863937,	32861087	32861158	32861134	32861135	Frame_Shift_Del	AG	-	p.TE115fs
LGG	TCGA-DB-A64L-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793215	42793218	Frame_Shift_Del	CAGT	-	p.DS1278fs
LGG	TCGA-HT-7473-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938452	76938453	Frame_Shift_Ins	-	T	p.F766fs
LGG	TCGA-S9-A6TY-01	ATG4B	ENST00000430617.2,ENST00000482507.1,ENST00000404914.3,ENST00000474739.2,ENST00000468018.1,ENST00000396411.3,ENST00000425239.1,ENST00000344376.5,ENST00000429899.1,ENST00000493618.1,ENST00000405546.3,ENST00000402096.1	chr2	242593960:242594062:242594685:242594758:242606059:242606184,242593960:242594062:242594685:242594758:242598522:242598602,	242594686	242594758	242594751	242594755	Frame_Shift_Del	GTCCT	-	p.VL151fs
LGG	TCGA-DU-A5TS-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938084	76938085	Frame_Shift_Ins	-	A	p.F888fs
LGG	TCGA-DU-5871-01	MSI1	ENST00000257552.2	chr12	120783372:120783435:120783937:120784125:120785248:120785317,	120783938	120784125	120784021	120784021	Frame_Shift_Del	C	-	p.A323fs
LGG	TCGA-WY-A859-01	PTPRF	ENST00000436724.1,ENST00000438120.1,ENST00000481019.1,ENST00000359947.4,ENST00000496043.1,ENST00000372405.1	chr1	44003872:44003948:44010701:44010837:44019162:44019190,	44010702	44010837	44010763	44010763	Frame_Shift_Del	C	-	p.A6fs
LGG	TCGA-HW-7493-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938832	76938832	Frame_Shift_Del	A	-	p.L639fs
LGG	TCGA-DB-A64W-01	USP35	ENST00000529308.1	chr11	77899952:77900203:77907281:77907964:77908981:77909114,	77907282	77907964	77907849	77907849	Frame_Shift_Del	G	-	p.V186fs
LGG	TCGA-TQ-A7RJ-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579328	7579328	Frame_Shift_Del	T	-	p.K120fs
LGG	TCGA-DU-7290-01	NOTCH4	ENST00000375023.3	chr6	32180250:32180404:32180600:32180688:32180911:32180995,	32180601	32180688	32180628	32180628	Frame_Shift_Del	G	-	p.P833fs
LGG	TCGA-HT-A5R9-01	HBEGF	ENST00000507104.1,ENST00000230990.6	chr5	139714242:139714333:139715456:139715612:139722219:139722397,	139715457	139715612	139715486	139715489	Frame_Shift_Del	CAGA	-	p.CL174fs
LGG	TCGA-HT-A5R9-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LGG	TCGA-QH-A6CY-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LGG	TCGA-FG-A4MT-02	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
LGG	TCGA-DU-A7TD-01	RPS6KA1	ENST00000374163.1,ENST00000530003.1,ENST00000403732.2,ENST00000526792.1,ENST00000531113.1,ENST00000531382.1,ENST00000374168.2,ENST00000374166.4,ENST00000374162.2	chr1	26887535:26887625:26887995:26888154:26897939:26897999,	26887996	26888154	26888117	26888117	Frame_Shift_Del	C	-	p.T518fs
LGG	TCGA-DU-A7TD-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107955460	107955461	Frame_Shift_Ins	-	C	p.T471fs
LGG	TCGA-HW-8320-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
LGG	TCGA-FG-6691-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939673	76939674	Frame_Shift_Ins	-	T	p.ND358fs
LGG	TCGA-P5-A780-01	SERAC1	ENST00000607000.1,ENST00000367104.3,ENST00000367101.1,ENST00000367102.2,ENST00000606965.1	chr6	158571484:158571621:158576346:158576383:158579304:158579396,	158576347	158576383	158576366	158576366	Frame_Shift_Del	T	-	p.T37fs
LGG	TCGA-DU-6397-01	SS18	ENST00000269137.7,ENST00000539849.1,ENST00000545952.1,ENST00000269138.5,ENST00000585121.1,ENST00000542420.2,ENST00000539244.2,ENST00000579640.1,ENST00000415083.2,ENST00000542743.1,ENST00000585241.1	chr18	23619373:23619420:23632587:23632809:23637552:23637706,	23632588	23632809	23632625	23632626	Frame_Shift_Del	AT	-	p.Y190fs
LGG	TCGA-DU-6397-02	GLB1	ENST00000485698.1,ENST00000307377.8,ENST00000415454.1,ENST00000399402.3,ENST00000307363.5,ENST00000445488.2,ENST00000482097.1	chr3	33093249:33093290:33093374:33093496:33094982:33095041,	33093375	33093496	33093398	33093402	Frame_Shift_Del	AAGTA	-	p.IL296fs
LGG	TCGA-DU-6397-02	SWAP70	ENST00000524817.1,ENST00000318950.6	chr11	9715692:9715833:9735012:9735186:9746204:9746432,	9735013	9735186	9735069	9735070	Frame_Shift_Ins	-	A	p.VK99fs
LGG	TCGA-DU-6397-02	YIF1A	ENST00000376899.4,ENST00000528575.1,ENST00000431556.2,ENST00000359461.6,ENST00000376901.4	chr11	66055068:66055147:66055282:66055387:66056425:66056478,66055068:66055147:66055282:66055387:66055551:66055763,	66055283	66055387	66055361	66055362	Frame_Shift_Del	TT	-	p.K90fs
LGG	TCGA-DU-6397-02	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467047	58467047	Frame_Shift_Del	T	-	p.M788fs
LGG	TCGA-S9-A6UA-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96232106:96232208:96232435:96232567:96235824:96235893,	96232436	96232567	96232446	96232446	Frame_Shift_Del	T	-	p.I461fs
LGG	TCGA-S9-A6UA-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527570	29527571	Frame_Shift_Ins	-	T	p.C340fs
LGG	TCGA-HT-7690-01	MAPK8IP2	ENST00000442429.2,ENST00000399908.2,ENST00000329492.3,ENST00000399912.1,ENST00000008876.5,ENST00000341339.4	chr22	51043989:51044162:51044252:51044362:51045085:51045193,	51044253	51044362	51044326	51044326	Frame_Shift_Del	C	-	p.H430fs
LGG	TCGA-HT-7601-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.G758fs
LGG	TCGA-HT-7601-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
LGG	TCGA-CS-5393-01	KRT20	ENST00000167588.3	chr17	39033631:39033669:39034396:39034617:39036064:39036190,	39034397	39034617	39034595	39034596	Frame_Shift_Del	AG	-	p.L314fs
LGG	TCGA-DU-5870-02	ZCWPW2	ENST00000419130.1,ENST00000383768.2,ENST00000421010.1	chr3	28533617:28533664:28555554:28555613:28557044:28557112,	28555555	28555613	28555576	28555577	Frame_Shift_Ins	-	C	p.*227fs
LGG	TCGA-DU-5870-02	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LGG	TCGA-DU-5870-02	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LGG	TCGA-DU-5870-02	MYO5B	ENST00000285039.7	chr18	47438431:47438543:47455881:47455968:47462621:47462719,	47455882	47455968	47455945	47455945	Frame_Shift_Del	T	-	p.Q677fs
LGG	TCGA-DU-7015-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939957	76939957	Frame_Shift_Del	T	-	p.Y264fs
LGG	TCGA-TM-A84H-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
LGG	TCGA-TM-A84H-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198631	20198635	Frame_Shift_Del	TTCTC	-	p.GE450fs
LGG	TCGA-TM-A84H-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839165	62839168	Frame_Shift_Del	GCCA	-	p.AS206fs
LGG	TCGA-TM-A84H-01	PCMTD2	ENST00000299468.7,ENST00000308824.6	chr20	62895781:62895884:62896610:62896782:62899239:62899363,	62896611	62896782	62896749	62896749	Frame_Shift_Del	G	-	p.V183fs
LGG	TCGA-P5-A77W-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088645	27088646	Frame_Shift_Del	TA	-	p.Y752fs
LGG	TCGA-P5-A77W-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	712394	712397	Frame_Shift_Del	AAAC	-	p.ET543fs
LGG	TCGA-DU-A7TA-01	WDR60	ENST00000407559.3	chr7	158663832:158664253:158669299:158669382:158672374:158672680,	158669300	158669382	158669356	158669359	Frame_Shift_Del	AGAG	-	p.RE183fs
LGG	TCGA-DU-A7TA-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579323	7579324	Frame_Shift_Ins	-	A	p.D122fs
LGG	TCGA-DU-A7TA-01	SEC14L2	ENST00000483116.1,ENST00000312932.9,ENST00000402592.3,ENST00000405717.3,ENST00000403484.1	chr22	30806584:30806668:30811747:30811854:30811936:30812076,	30811748	30811854	30811775	30811776	Frame_Shift_Del	AT	-	p.H231fs
LGG	TCGA-HT-A61A-01	FTCD	ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47571805:47571894:47572820:47572949:47574062:47574246,	47572821	47572949	47572855	47572855	Frame_Shift_Del	A	-	p.F111fs
LGG	TCGA-DH-A66D-01	NEO1	ENST00000261908.6,ENST00000560262.1,ENST00000339362.5,ENST00000558964.1	chr15	73414974:73415141:73418757:73418911:73428231:73428368,	73418758	73418911	73418883	73418883	Frame_Shift_Del	A	-	p.K284fs
LGG	TCGA-DH-A66D-01	TWSG1	ENST00000262120.5,ENST00000581641.1	chr18	9334847:9334918:9337190:9337350:9359969:9360069,	9337191	9337350	9337233	9337234	Frame_Shift_Ins	-	T	p.T3fs
LGG	TCGA-DU-7018-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63509839	63509840	Frame_Shift_Del	AT	-	p.H229fs
LGG	TCGA-DU-7018-01	MRPL15	ENST00000519831.1,ENST00000260102.4,ENST00000522521.1	chr8	55049170:55049225:55049827:55049993:55055222:55055346,	55049828	55049993	55049886	55049889	Frame_Shift_Del	GGTC	-	p.GR108fs
LGG	TCGA-TQ-A7RF-01	PHF10	ENST00000366780.4,ENST00000339209.4	chr6	170114828:170114938:170115803:170115953:170116050:170116184,	170115804	170115953	170115929	170115930	Frame_Shift_Del	TC	-	p.QK189fs
LGG	TCGA-HT-8564-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680127	6680128	Frame_Shift_Ins	-	G	p.G136fs
LGG	TCGA-HT-8564-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088659	27088659	Frame_Shift_Del	C	-	p.N756fs
LGG	TCGA-HT-8564-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220300091:220300185:220307743:220307852:220310150:220310253,	220307744	220307852	220307791	220307791	Frame_Shift_Del	G	-	p.G558fs
LGG	TCGA-HT-8564-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005515	150005515	Frame_Shift_Del	G	-	p.P240fs
LGG	TCGA-HT-8564-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561447	142561448	Frame_Shift_Ins	-	G	p.PG53fs
LGG	TCGA-HT-8564-01	CLU	ENST00000522299.1,ENST00000560366.1,ENST00000519472.1,ENST00000523589.1,ENST00000518050.1	chr8	27466585:27466603:27467991:27468117:27472171:27472198,	27467992	27468117	27468075	27468076	Frame_Shift_Del	AG	-	p.L7fs
LGG	TCGA-HT-8564-01	TBC1D31	ENST00000522276.1,ENST00000378080.2,ENST00000309336.3,ENST00000518099.1,ENST00000522420.1,ENST00000521676.1,ENST00000524307.1,ENST00000521980.1,ENST00000327098.5,ENST00000287380.1	chr8	124096401:124096580:124105830:124105982:124109521:124109623,	124105831	124105982	124105886	124105886	Frame_Shift_Del	T	-	p.I192fs
LGG	TCGA-HT-8564-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322259	27322259	Frame_Shift_Del	T	-	p.K1234fs
LGG	TCGA-HT-8564-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.G1862fs
LGG	TCGA-HT-8564-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308890	33308891	Frame_Shift_Ins	-	A	p.LK310fs
LGG	TCGA-HT-8564-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74868932:74869045:74878232:74878380:74898636:74898752,	74878233	74878380	74878237	74878237	Frame_Shift_Del	G	-	p.M62fs
LGG	TCGA-HT-8564-01	DIP2A	ENST00000400274.1,ENST00000435722.3,ENST00000457905.3,ENST00000427143.2,ENST00000417564.2,ENST00000318711.7,ENST00000494435.1,ENST00000466639.1,ENST00000473752.1	chr21	47953916:47954026:47954497:47954600:47957136:47957201,	47954498	47954600	47954526	47954527	Frame_Shift_Ins	-	G	p.G524fs
LGG	TCGA-WY-A85C-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21779188:21779291:21781544:21781784:21784055:21784217,	21781545	21781784	21781718	21781718	Frame_Shift_Del	C	-	p.N2703fs
LGG	TCGA-WY-A85C-01	PHLDB1	ENST00000532517.1,ENST00000361417.2	chr11	118509879:118509969:118512971:118513112:118514517:118514658,	118512972	118513112	118513008	118513021	Frame_Shift_Del	CAGTGGTACCAGGA	-	p.QWYQE925fs
LGG	TCGA-WY-A85C-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579716	7579716	Frame_Shift_Del	G	-	p.P27fs
LGG	TCGA-CS-5395-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LGG	TCGA-TM-A84T-01	SRRM2	ENST00000573692.1,ENST00000574866.1,ENST00000574331.1,ENST00000301740.8	chr16	2820361:2820466:2820604:2820718:2820858:2820935,	2820605	2820718	2820625	2820625	Frame_Shift_Del	C	-	p.S2719fs
LGG	TCGA-TM-A84T-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937603	76937603	Frame_Shift_Del	T	-	p.I1049fs
LGG	TCGA-DU-8164-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
LGG	TCGA-FG-A713-01	EPC2	ENST00000258484.6,ENST00000457184.1	chr2	149402608:149402739:149447782:149447942:149501190:149501336,	149447783	149447942	149447887	149447887	Frame_Shift_Del	C	-	p.Y86fs
LGG	TCGA-FG-8185-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939914	76939915	Frame_Shift_Del	AG	-	p.T278fs
LGG	TCGA-HT-7681-01	SAMD4A	ENST00000251091.5,ENST00000392067.3,ENST00000555192.1,ENST00000357634.3,ENST00000554335.1	chr14	55231172:55231258:55236821:55236940:55241651:55241853,	55236822	55236940	55236839	55236840	Frame_Shift_Ins	-	A	p.QK450fs
LGG	TCGA-HT-7681-01	FBXL19	ENST00000471231.2,ENST00000562319.1,ENST00000427128.1,ENST00000380310.2,ENST00000338343.4	chr16	30938893:30938980:30939065:30939284:30939787:30939820,	30939066	30939284	30939204	30939204	Frame_Shift_Del	C	-	p.P185fs
LGG	TCGA-DU-8168-01	TCERG1L	ENST00000483040.1	chr10	132932641:132932711:132944768:132944923:132961384:132961473,132932641:132932711:132944768:132944923:132954282:132954552,	132944769	132944923	132944858	132944861	Frame_Shift_Del	CAGA	-	p.VW366fs
LGG	TCGA-DU-6392-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680296	6680297	Frame_Shift_Ins	-	A	p.K192fs
LGG	TCGA-DU-6392-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46751494	46751495	Frame_Shift_Ins	-	G	p.R345fs
LGG	TCGA-DU-6392-01	IFI44	ENST00000438486.1	chr1	79115542:79115590:79116225:79116337:79119927:79119964,	79116226	79116337	79116271	79116272	Frame_Shift_Ins	-	A	p.K131fs
LGG	TCGA-DU-6392-01	IFI44	ENST00000370747.4,ENST00000467790.1	chr1	79115542:79115590:79115870:79116337:79119927:79119964,	79115871	79116337	79116271	79116272	Frame_Shift_Ins	-	A	p.K131fs
LGG	TCGA-DU-6392-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93142714:93142775:93159358:93159456:93159855:93159945,	93159359	93159456	93159366	93159366	Frame_Shift_Del	T	-	p.M408fs
LGG	TCGA-DU-6392-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
LGG	TCGA-DU-6392-01	WARS2	ENST00000495746.1,ENST00000235521.4	chr1	119588204:119588285:119618972:119619230:119683177:119683261,	119618973	119619230	119618995	119618996	Frame_Shift_Ins	-	T	p.H109fs
LGG	TCGA-DU-6392-01	SOX13	ENST00000367204.1	chr1	204042731:204042839:204082042:204082262:204083448:204083560,	204082043	204082262	204082240	204082241	Frame_Shift_Ins	-	T	p.R66fs
LGG	TCGA-DU-6392-01	USP34	ENST00000398571.2	chr2	61622317:61622368:61632842:61633263:61647880:61647968,	61632843	61633263	61633019	61633020	Frame_Shift_Ins	-	T	p.NK125fs
LGG	TCGA-DU-6392-01	TPRKB	ENST00000272424.5,ENST00000318190.7,ENST00000409716.2	chr2	73957016:73957156:73957686:73957863:73959289:73959412,	73957687	73957863	73957782	73957783	Frame_Shift_Ins	-	T	p.N155fs
LGG	TCGA-DU-6392-01	CNOT10	ENST00000494439.1,ENST00000556853.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000416457.1	chr3	32750188:32750312:32754718:32754861:32757716:32757803,	32754719	32754861	32754743	32754744	Frame_Shift_Ins	-	T	p.F152fs
LGG	TCGA-DU-6392-01	SLC33A1	ENST00000359479.3	chr3	155551645:155551830:155560220:155560408:155571011:155571106,	155560221	155560408	155560396	155560396	Frame_Shift_Del	A	-	p.F263fs
LGG	TCGA-DU-6392-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174814914	174814914	Frame_Shift_Del	A	-	p.L126fs
LGG	TCGA-DU-6392-01	SH3TC1	ENST00000508641.1,ENST00000539824.1,ENST00000515682.1,ENST00000507891.1,ENST00000245105.3	chr4	8217929:8217984:8218683:8218894:8219997:8220074,	8218684	8218894	8218777	8218778	Frame_Shift_Ins	-	T	p.W165fs
LGG	TCGA-DU-6392-01	MED28	ENST00000503945.2,ENST00000237380.7	chr4	17621523:17621590:17623209:17623322:17625223:17625417,	17623210	17623322	17623272	17623273	Frame_Shift_Ins	-	A	p.K97fs
LGG	TCGA-DU-6392-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P230fs
LGG	TCGA-DU-6392-01	HNRNPD	ENST00000513584.1,ENST00000541060.1	chr4	83278589:83278597:83279811:83279973:83280623:83280792,83278589:83278597:83279811:83279973:83294598:83294639,	83279812	83279973	83279883	83279883	Frame_Shift_Del	T	-	p.I184fs
LGG	TCGA-DU-6392-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104044027:104044246:104053849:104054053:104054851:104055049,	104053850	104054053	104053958	104053959	Frame_Shift_Ins	-	A	p.*2272fs
LGG	TCGA-DU-6392-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106158447	106158447	Frame_Shift_Del	A	-	p.I1137fs
LGG	TCGA-DU-6392-01	ABCE1	ENST00000504683.1,ENST00000507193.1,ENST00000296577.4	chr4	146044366:146044509:146044629:146044752:146046141:146046253,	146044630	146044752	146044650	146044651	Frame_Shift_Ins	-	G	p.N513fs
LGG	TCGA-DU-6392-01	DNAH5	ENST00000265104.4	chr5	13777315:13777464:13780937:13781068:13786287:13786460,	13780938	13781068	13781003	13781004	Frame_Shift_Ins	-	T	p.T2962fs
LGG	TCGA-DU-6392-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986241	36986242	Frame_Shift_Ins	-	A	p.K987fs
LGG	TCGA-DU-6392-01	ITGA2	ENST00000503810.2,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52374601:52374704:52376340:52376451:52377421:52377526,	52376341	52376451	52376441	52376441	Frame_Shift_Del	A	-	p.Q1010fs
LGG	TCGA-DU-6392-01	MOCS2	ENST00000361377.4	chr5	52397188:52397339:52397926:52398054:52402906:52403007,52396240:52396364:52397926:52398054:52402906:52403007,	52397927	52398054	52397989	52397990	Frame_Shift_Ins	-	A	p.S55fs
LGG	TCGA-DU-6392-01	PAM	ENST00000438793.3,ENST00000346918.2,ENST00000274392.9,ENST00000345721.2,ENST00000304400.7,ENST00000379787.4,ENST00000455264.2,ENST00000379799.3	chr5	102296867:102296933:102309819:102310140:102325975:102326105,	102309820	102310140	102309948	102309949	Frame_Shift_Ins	-	A	p.K431fs
LGG	TCGA-DU-6392-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118500201:118500371:118500877:118500975:118502310:118502476,	118500878	118500975	118500926	118500927	Frame_Shift_Ins	-	T	p.F1641fs
LGG	TCGA-DU-6392-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506838	118506839	Frame_Shift_Ins	-	A	p.K2118fs
LGG	TCGA-DU-6392-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610311	127610311	Frame_Shift_Del	C	-	p.G2553fs
LGG	TCGA-DU-6392-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4	chr5	134109474:134109551:134113263:134113415:134116822:134116936,	134113264	134113415	134113367	134113367	Frame_Shift_Del	A	-	p.V239fs
LGG	TCGA-DU-6392-01	ANKHD1	ENST00000360839.2,ENST00000297183.6,ENST00000421134.1	chr5	139866542:139866645:139876104:139876863:139884405:139884551,	139876105	139876863	139876355	139876356	Frame_Shift_Ins	-	A	p.N833fs
LGG	TCGA-DU-6392-01	CD109	ENST00000422508.2,ENST00000437994.2,ENST00000287097.5	chr6	74516566:74516795:74517805:74517971:74519706:74519897,	74517806	74517971	74517834	74517835	Frame_Shift_Ins	-	T	p.L1073fs
LGG	TCGA-DU-6392-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086745	144086746	Frame_Shift_Ins	-	C	p.P337fs
LGG	TCGA-DU-6392-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000413276.2,ENST00000412139.2,ENST00000579850.1,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2,ENST00000425406.1,ENST00000488352.2	chr7	86823077:86823418:86823999:86824144:86824346:86824482,	86824000	86824144	86824052	86824052	Frame_Shift_Del	A	-	p.E428fs
LGG	TCGA-DU-6392-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115590927:115591003:115594639:115594696:115596732:115596847,	115594640	115594696	115594657	115594657	Frame_Shift_Del	T	-	p.K141fs
LGG	TCGA-DU-6392-01	CPA1	ENST00000484324.1,ENST00000011292.3,ENST00000491460.1,ENST00000476062.1	chr7	130021948:130022050:130023231:130023333:130023524:130023635,	130023232	130023333	130023239	130023240	Frame_Shift_Ins	-	G	p.R164fs
LGG	TCGA-DU-6392-01	SAMD12	ENST00000314727.4,ENST00000526328.1	chr8	119452100:119452200:119592953:119593132:119634042:119634132,	119592954	119593132	119593026	119593027	Frame_Shift_Ins	-	T	p.K40fs
LGG	TCGA-DU-6392-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412163	77412164	Frame_Shift_Ins	-	T	p.Q704fs
LGG	TCGA-DU-6392-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874010	104874011	Frame_Shift_Ins	-	T	p.T191fs
LGG	TCGA-DU-6392-01	MCAM	ENST00000264036.4,ENST00000525586.1,ENST00000528533.1,ENST00000392814.1	chr11	119182052:119182131:119182239:119182361:119182517:119182659,	119182240	119182361	119182354	119182355	Frame_Shift_Ins	-	G	p.L380fs
LGG	TCGA-DU-6392-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000550260.1,ENST00000522085.1,ENST00000548993.1,ENST00000347328.5,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50824280:50824353:50829270:50829407:50831517:50831561,	50829271	50829407	50829360	50829361	Frame_Shift_Ins	-	A	p.K163fs
LGG	TCGA-DU-6392-01	CAND1	ENST00000544619.1,ENST00000545606.1	chr12	67703680:67703850:67703931:67704096:67705472:67705580,	67703932	67704096	67703936	67703936	Frame_Shift_Del	A	-	p.E1067fs
LGG	TCGA-DU-6392-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
LGG	TCGA-DU-6392-01	KLHDC2	ENST00000555739.1,ENST00000554589.1,ENST00000557247.1,ENST00000555443.1	chr14	50234885:50235339:50238311:50238391:50241278:50241396,	50238312	50238391	50238339	50238339	Frame_Shift_Del	T	-	p.F61fs
LGG	TCGA-DU-6392-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224050	51224050	Frame_Shift_Del	T	-	p.K1234fs
LGG	TCGA-DU-6392-01	FLVCR2	ENST00000539311.1,ENST00000555058.1,ENST00000238667.4,ENST00000553587.1	chr14	76088400:76088563:76090954:76091095:76099971:76100039,	76090955	76091095	76090972	76090972	Frame_Shift_Del	A	-	p.K277fs
LGG	TCGA-DU-6392-01	GALC	ENST00000544807.2,ENST00000555000.1	chr14	88400242:88400343:88406248:88406325:88407738:88407902,	88406249	88406325	88406276	88406276	Frame_Shift_Del	T	-	p.K628fs
LGG	TCGA-DU-6392-01	VPS13C	ENST00000261517.5,ENST00000395896.4	chr15	62315609:62315719:62315978:62316044:62320556:62320619,	62315979	62316044	62316028	62316029	Frame_Shift_Ins	-	T	p.T155fs
LGG	TCGA-DU-6392-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79292084:79292255:79294003:79294129:79296143:79296517,	79294004	79294129	79294017	79294018	Frame_Shift_Ins	-	T	p.K870fs
LGG	TCGA-DU-6392-01	IL16	ENST00000302987.4,ENST00000394660.2,ENST00000360547.5,ENST00000560241.1,ENST00000559388.1,ENST00000559383.1	chr15	81561878:81561989:81565430:81565545:81571157:81571231,	81565431	81565545	81565500	81565501	Frame_Shift_Ins	-	T	p.F249fs
LGG	TCGA-DU-6392-01	CTU2	ENST00000378384.3,ENST00000564105.1	chr16	88773543:88773618:88776630:88776690:88778042:88778103,	88776631	88776690	88776649	88776649	Frame_Shift_Del	G	-	p.G82fs
LGG	TCGA-DU-6392-01	ZNF532	ENST00000588956.1,ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000592249.1,ENST00000591230.1,ENST00000336078.4,ENST00000589131.1	chr18	56646286:56646399:56648701:56648849:56651203:56651326,	56648702	56648849	56648824	56648824	Frame_Shift_Del	A	-	p.E1129fs
LGG	TCGA-DU-6392-01	TTPAL	ENST00000262605.4,ENST00000372904.3	chr20	43108624:43109084:43112976:43113170:43115235:43115346,	43112977	43113170	43113129	43113129	Frame_Shift_Del	T	-	p.F200fs
LGG	TCGA-DU-6392-01	LIPI	ENST00000536861.1	chr21	15558281:15558390:15561354:15561740:15583120:15583166,	15561355	15561740	15561361	15561362	Frame_Shift_Ins	-	T	p.T163fs
LGG	TCGA-DU-6392-01	AKAP14	ENST00000371431.3	chrX	119037457:119037549:119048661:119048841:119053873:119053926,	119048662	119048841	119048673	119048674	Frame_Shift_Ins	-	A	p.SK91fs
LGG	TCGA-TM-A84Q-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937741	76937744	Frame_Shift_Del	TTAC	-	p.VI1002fs
LGG	TCGA-HT-A74H-01	BCAR1	ENST00000569340.1	chr16	75269565:75269884:75271080:75271242:75276367:75276460,	75271081	75271242	75271148	75271148	Frame_Shift_Del	G	-	p.P214fs
LGG	TCGA-HT-A74H-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LGG	TCGA-HT-A74H-01	FBL	ENST00000599159.1,ENST00000221801.3	chr19	40331053:40331155:40331256:40331427:40336930:40336969,	40331257	40331427	40331409	40331409	Frame_Shift_Del	C	-	p.G11fs
LGG	TCGA-HT-A74H-01	FBL	ENST00000599134.1	chr19	40331053:40331155:40331295:40331427:40336930:40336969,	40331296	40331427	40331409	40331409	Frame_Shift_Del	C	-	p.G11fs
LGG	TCGA-HT-A74H-01	FBL	ENST00000594309.1	chr19	40331053:40331155:40331259:40331427:40336930:40336969,	40331260	40331427	40331409	40331409	Frame_Shift_Del	C	-	p.G11fs
LGG	TCGA-FG-A4MY-01	FAF2	ENST00000261942.6,ENST00000510446.1	chr5	175906188:175906257:175913355:175913490:175915951:175916028,	175913356	175913490	175913383	175913384	Frame_Shift_Ins	-	A	p.R54fs
LGG	TCGA-FG-A4MY-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1,ENST00000400866.2	chrX	76872080:76872198:76874273:76874449:76875862:76876000,	76874274	76874449	76874425	76874425	Frame_Shift_Del	T	-	p.K1766fs
LGG	TCGA-HT-7470-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
LGG	TCGA-HT-7470-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1,ENST00000400866.2	chrX	76872080:76872198:76874273:76874449:76875862:76876000,	76874274	76874449	76874329	76874330	Frame_Shift_Ins	-	T	p.S1798fs
LGG	TCGA-HT-7606-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214774	108214774	Frame_Shift_Del	T	-	p.K530fs
LGG	TCGA-HT-7606-01	RBM41	ENST00000203616.8,ENST00000495517.1	chrX	106313419:106313655:106331964:106332069:106356626:106356698,	106331965	106332069	106331986	106331986	Frame_Shift_Del	C	-	p.E204fs
LGG	TCGA-HT-7606-01	RBM41	ENST00000372487.1,ENST00000372479.3	chrX	106312539:106312632:106331665:106332069:106358581:106358684,	106331666	106332069	106331986	106331986	Frame_Shift_Del	C	-	p.E204fs
LGG	TCGA-RY-A847-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
LIHC	TCGA-DD-AADA-01	PRIMA1	ENST00000316227.3,ENST00000393140.1,ENST00000393143.1,ENST00000477603.1	chr14	94203586:94203716:94245521:94245657:94253971:94254095,	94245522	94245657	94245574	94245575	Frame_Shift_Ins	-	GGGG	p.P59fs
LIHC	TCGA-DD-A114-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315943	50315980	Frame_Shift_Del	CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG	-	p.198_207del
LIHC	TCGA-DD-A114-01	LCOR	ENST00000540664.1	chr10	98711859:98711953:98714709:98715591:98718168:98718272,	98714710	98715591	98715171	98715171	Frame_Shift_Del	G	-	p.W265fs
LIHC	TCGA-CC-A5UE-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752447	8752447	Frame_Shift_Del	G	-	p.C131fs
LIHC	TCGA-CC-A5UE-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000510166.1,ENST00000509063.1,ENST00000515133.1,ENST00000441319.1	chr4	74270017:74270123:74272345:74272478:74275071:74275204,74270837:74270890:74272345:74272478:74274310:74274457,	74272346	74272478	74272392	74272393	Frame_Shift_Ins	-	ATCA	p.D62fs
LIHC	TCGA-CC-A5UE-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41800462:41800591:41807440:41807609:41808569:41808854,	41807441	41807609	41807519	41807519	Frame_Shift_Del	C	-	p.C532fs
LIHC	TCGA-CC-A3M9-01	HNRNPD	ENST00000514671.1,ENST00000353341.4,ENST00000508119.1	chr4	83276456:83276554:83277948:83278048:83278465:83278545,	83277949	83278048	83278019	83278020	Frame_Shift_Ins	-	C	p.E261fs
LIHC	TCGA-CC-A3M9-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155168	106155169	Frame_Shift_Ins	-	CA	p.P23fs
LIHC	TCGA-CC-A3M9-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155167	106155168	Frame_Shift_Ins	-	T	p.P23fs
LIHC	TCGA-DD-A4NK-01	HIRIP3	ENST00000279392.3	chr16	30004969:30005129:30005226:30006164:30006423:30006538,	30005227	30006164	30005727	30005728	Frame_Shift_Ins	-	T	p.E247fs
LIHC	TCGA-RG-A7D4-01	CNTROB	ENST00000380255.3,ENST00000576536.1,ENST00000563694.1	chr17	7851474:7851645:7851804:7851937:7852402:7852455,	7851805	7851937	7851880	7851898	Frame_Shift_Del	GGGGGGCTCTGCCTGCTGA	-	p.819_825del
LIHC	TCGA-RG-A7D4-01	CNTROB	ENST00000380262.3	chr17	7851474:7851645:7851804:7852003:7852402:7852455,	7851805	7852003	7851880	7851898	Frame_Shift_Del	GGGGGGCTCTGCCTGCTGA	-	p.819_825del
LIHC	TCGA-DD-AACJ-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018452	134018452	Frame_Shift_Del	C	-	p.N241fs
LIHC	TCGA-DD-AAVP-01	ARVCF	ENST00000406522.1,ENST00000263207.3,ENST00000344269.3,ENST00000406259.1,ENST00000495096.1,ENST00000401994.1	chr22	19960447:19960559:19960641:19960840:19961165:19961316,	19960642	19960840	19960689	19960692	Frame_Shift_Del	GAGC	-	p.797_798del
LIHC	TCGA-DD-AADI-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107601993:107602121:107603349:107603508:107604996:107605132,	107603350	107603508	107603404	107603404	Frame_Shift_Del	A	-	p.D602fs
LIHC	TCGA-DD-AADI-01	CD1E	ENST00000368160.3,ENST00000444681.2,ENST00000368167.3	chr1	158325317:158325359:158325616:158325895:158326287:158326381,	158325617	158325895	158325883	158325889	Frame_Shift_Del	ATCATCC	-	p.297_299del
LIHC	TCGA-DD-AADI-01	CD1E	ENST00000368160.3,ENST00000444681.2,ENST00000368167.3	chr1	158325317:158325359:158325616:158325895:158326287:158326381,	158325617	158325895	158325895	158325896	Frame_Shift_Ins	-	T	p.G302fs
LIHC	TCGA-EP-A3RK-01	SDS	ENST00000257549.4	chr12	113831696:113831821:113834969:113835197:113836319:113836411,	113834970	113835197	113834987	113834988	Frame_Shift_Ins	-	T	p.S212fs
LIHC	TCGA-DD-AAD3-01	KCNN4	ENST00000600408.1	chr19	44273114:44273184:44273484:44273712:44273870:44273979,	44273485	44273712	44273601	44273601	Frame_Shift_Del	T	-	p.I348fs
LIHC	TCGA-DD-AAD3-01	KCNN4	ENST00000598836.1	chr19	44273114:44273184:44273498:44273650:44273870:44273979,	44273499	44273650	44273601	44273601	Frame_Shift_Del	T	-	p.I348fs
LIHC	TCGA-DD-AAD3-01	KCNN4	ENST00000599720.1,ENST00000262888.3	chr19	44273114:44273184:44273593:44273712:44273870:44273979,	44273594	44273712	44273601	44273601	Frame_Shift_Del	T	-	p.I348fs
LIHC	TCGA-2Y-A9HB-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4	chr14	94847207:94847478:94848928:94849578:94854896:94854926,	94848929	94849578	94848963	94848964	Frame_Shift_Del	TG	-	p.204_205del
LIHC	TCGA-2Y-A9HB-01	GRIK2	ENST00000318991.6,ENST00000369134.4,ENST00000413795.1,ENST00000421544.1,ENST00000369137.3,ENST00000369138.1	chr6	102130427:102130481:102134054:102134228:102247522:102247666,	102134055	102134228	102134116	102134116	Frame_Shift_Del	G	-	p.R280fs
LIHC	TCGA-UB-AA0U-01	MYRF	ENST00000278836.5,ENST00000265460.5	chr11	61533096:61533184:61533429:61533693:61536731:61536786,	61533430	61533693	61533636	61533637	Frame_Shift_Ins	-	C	p.F114fs
LIHC	TCGA-4R-AA8I-01	AGBL2	ENST00000357610.3,ENST00000528244.1,ENST00000298861.4,ENST00000528609.1,ENST00000525123.1	chr11	47698822:47698953:47701524:47701625:47703520:47703647,	47701525	47701625	47701557	47701557	Frame_Shift_Del	G	-	p.L662fs
LIHC	TCGA-4R-AA8I-01	FOXK2	ENST00000527313.2	chr17	80478169:80478183:80521229:80521424:80525929:80526077,80478169:80478183:80521229:80521424:80529599:80529746,	80521230	80521424	80521292	80521293	Frame_Shift_Del	AG	-	p.161_161del
LIHC	TCGA-4R-AA8I-01	GPC2	ENST00000490629.1	chr7	99769273:99769301:99769401:99769582:99769709:99769840,	99769402	99769582	99769524	99769525	Frame_Shift_Ins	-	G	p.D350fs
LIHC	TCGA-4R-AA8I-01	GPC2	ENST00000486702.1,ENST00000471050.1,ENST00000292377.2	chr7	99769273:99769301:99769401:99769548:99769709:99769840,	99769402	99769548	99769524	99769525	Frame_Shift_Ins	-	G	p.D350fs
LIHC	TCGA-4R-AA8I-01	RPN2	ENST00000237530.6,ENST00000456400.1,ENST00000373622.5	chr20	35858393:35858462:35860698:35860794:35862422:35862498,	35860699	35860794	35860726	35860726	Frame_Shift_Del	C	-	p.R536fs
LIHC	TCGA-4R-AA8I-01	UBA2	ENST00000586313.1,ENST00000246548.4,ENST00000439527.2	chr19	34945393:34945461:34949673:34949829:34951374:34951471,	34949674	34949829	34949675	34949675	Frame_Shift_Del	T	-	p.I416fs
LIHC	TCGA-4R-AA8I-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77411876	77411876	Frame_Shift_Del	T	-	p.R800fs
LIHC	TCGA-4R-AA8I-01	ARAP1	ENST00000359373.5,ENST00000393609.3	chr11	72425196:72425366:72437664:72438217:72443559:72443642,	72437665	72438217	72437830	72437830	Frame_Shift_Del	G	-	p.P115fs
LIHC	TCGA-4R-AA8I-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135967	144135968	Frame_Shift_Ins	-	A	p.Y946fs
LIHC	TCGA-4R-AA8I-01	LAMA5	ENST00000370691.2	chr20	60885043:60885137:60885233:60885367:60885720:60885885,	60885234	60885367	60885264	60885264	Frame_Shift_Del	G	-	p.Y3569fs
LIHC	TCGA-4R-AA8I-01	FBXL7	ENST00000504595.1,ENST00000329673.7,ENST00000510662.1	chr5	15616091:15616181:15927998:15928610:15936558:15937295,	15927999	15928610	15928504	15928504	Frame_Shift_Del	C	-	p.C211fs
LIHC	TCGA-4R-AA8I-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235856649:235856786:235860382:235860572:235866046:235866277,	235860383	235860572	235860518	235860519	Frame_Shift_Ins	-	G	p.S3477fs
LIHC	TCGA-4R-AA8I-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.Q413fs
LIHC	TCGA-4R-AA8I-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.Q413fs
LIHC	TCGA-4R-AA8I-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327684	16327684	Frame_Shift_Del	G	-	p.S287fs
LIHC	TCGA-4R-AA8I-01	IPO7	ENST00000379719.3	chr11	9431615:9431633:9435801:9435958:9438605:9438695,	9435802	9435958	9435806	9435806	Frame_Shift_Del	A	-	p.Y161X
LIHC	TCGA-4R-AA8I-01	COL6A1	ENST00000361866.3	chr21	47412661:47412724:47414080:47414143:47417334:47417397,	47414081	47414143	47414118	47414119	Frame_Shift_Ins	-	C	p.G458fs
LIHC	TCGA-4R-AA8I-01	MPZ	ENST00000491222.2,ENST00000336559.4,ENST00000533357.1,ENST00000360451.6,ENST00000463290.1	chr1	161276118:161276254:161276497:161276711:161277047:161277214,	161276498	161276711	161276499	161276499	Frame_Shift_Del	T	-	p.V150fs
LIHC	TCGA-4R-AA8I-01	TCF7L2	ENST00000543371.1,ENST00000545257.1,ENST00000538897.1,ENST00000536810.1,ENST00000349937.2,ENST00000355995.4,ENST00000369397.4,ENST00000534894.1,ENST00000352065.5	chr10	114799783:114799885:114900942:114901075:114903681:114903772,	114900943	114901075	114900984	114900984	Frame_Shift_Del	C	-	p.H222fs
LIHC	TCGA-4R-AA8I-01	NXN	ENST00000575801.1,ENST00000575455.1,ENST00000571684.1,ENST00000336868.3,ENST00000537628.2	chr17	725596:725697:726871:727005:729200:729241,	726872	727005	726873	726874	Frame_Shift_Ins	-	A	p.W204fs
LIHC	TCGA-4R-AA8I-01	TRIM66	ENST00000530502.1	chr11	8641992:8642119:8642578:8642784:8643191:8643366,	8642579	8642784	8642705	8642705	Frame_Shift_Del	G	-	p.P964fs
LIHC	TCGA-4R-AA8I-01	TRIM66	ENST00000299550.6,ENST00000402157.2,ENST00000481014.2	chr11	8641992:8642119:8642578:8642868:8643191:8643366,	8642579	8642868	8642705	8642705	Frame_Shift_Del	G	-	p.P964fs
LIHC	TCGA-4R-AA8I-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000445419.2,ENST00000505222.1,ENST00000503631.1	chr6	82883083:82883155:82891595:82891745:82900789:82900933,	82891596	82891745	82891683	82891683	Frame_Shift_Del	T	-	p.K1213fs
LIHC	TCGA-4R-AA8I-01	TRIP6	ENST00000437505.1	chr7	100465015:100465228:100465729:100465855:100466116:100466488,	100465730	100465855	100465745	100465746	Frame_Shift_Ins	-	G	p.R85fs
LIHC	TCGA-4R-AA8I-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54157539:54157621:54354468:54354585:54420741:54420801,	54354469	54354585	54354484	54354484	Frame_Shift_Del	G	-	p.Y73X
LIHC	TCGA-4R-AA8I-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73718037	73718038	Frame_Shift_Ins	-	T	p.H2983fs
LIHC	TCGA-4R-AA8I-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070523	197070524	Frame_Shift_Ins	-	T	p.Q2620fs
LIHC	TCGA-4R-AA8I-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000336057.5,ENST00000225983.6	chr17	42157474:42157593:42157768:42157866:42158130:42158250,	42157769	42157866	42157801	42157801	Frame_Shift_Del	G	-	p.I933fs
LIHC	TCGA-4R-AA8I-01	DHX9	ENST00000367549.3,ENST00000483416.1	chr1	182811679:182811812:182812428:182812569:182821367:182821479,	182812429	182812569	182812563	182812563	Frame_Shift_Del	T	-	p.A82fs
LIHC	TCGA-4R-AA8I-01	CARS	ENST00000380525.4,ENST00000529772.1,ENST00000526890.1,ENST00000466442.2,ENST00000531387.1,ENST00000397114.3,ENST00000484484.1,ENST00000401769.3,ENST00000397111.5,ENST00000278224.9	chr11	3023770:3023830:3026595:3026663:3028108:3028189,	3026596	3026663	3026609	3026612	Frame_Shift_Del	TCTC	-	p.734_735del
LIHC	TCGA-4R-AA8I-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496635	15496636	Frame_Shift_Ins	-	G	p.L393fs
LIHC	TCGA-4R-AA8I-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48604560:48604623:48605006:48605069:48605142:48605196,	48605007	48605069	48605066	48605066	Frame_Shift_Del	C	-	p.E2663fs
LIHC	TCGA-4R-AA8I-01	ABLIM2	ENST00000505872.1,ENST00000407564.3	chr4	8010776:8010829:8031382:8031503:8037875:8038022,	8031383	8031503	8031388	8031389	Frame_Shift_Ins	-	G	p.R399fs
LIHC	TCGA-4R-AA8I-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856126	100856126	Frame_Shift_Del	C	-	p.Q293fs
LIHC	TCGA-4R-AA8I-01	TMEM232	ENST00000429839.2,ENST00000515278.2,ENST00000455884.2	chr5	109977960:109978072:110002928:110003065:110070603:110070716,109977960:109978072:110002928:110003065:110062327:110062359,	110002929	110003065	110003053	110003054	Frame_Shift_Ins	-	A	p.M1fs
LIHC	TCGA-4R-AA8I-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211543	225211543	Frame_Shift_Del	A	-	p.E445fs
LIHC	TCGA-DD-AAEI-01	CUX2	ENST00000397643.3,ENST00000261726.6	chr12	111701564:111701643:111729221:111729356:111731249:111731373,	111729222	111729356	111729223	111729223	Frame_Shift_Del	C	-	p.D101fs
LIHC	TCGA-DD-AAEI-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579521	7579521	Frame_Shift_Del	C	-	p.E56fs
LIHC	TCGA-UB-A7MC-01	HSD3B7	ENST00000574447.1,ENST00000353250.5,ENST00000262520.6,ENST00000297679.5	chr16	30996973:30997145:30997369:30997525:30997743:30997852,	30997370	30997525	30997473	30997473	Frame_Shift_Del	A	-	p.V90fs
LIHC	TCGA-2Y-A9H9-01	GSPT1	ENST00000562169.1,ENST00000439887.2	chr16	11990414:11990642:11991696:11991738:11991850:11991892,11990472:11990639:11991696:11991738:11991850:11991892,	11991697	11991738	11991733	11991750	Frame_Shift_Del	TTGAACCTAGACAAGAGA	-	p.132_134del
LIHC	TCGA-DD-A4NE-01	SPAG6	ENST00000376601.1,ENST00000376603.2,ENST00000376624.3,ENST00000538630.1	chr10	22690089:22690206:22699959:22700105:22705547:22705702,	22699960	22700105	22700061	22700070	Frame_Shift_Del	ATACATCAAC	-	p.472_475del
LIHC	TCGA-BW-A5NO-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220300091:220300185:220307743:220307852:220310150:220310253,	220307744	220307852	220307815	220307816	Frame_Shift_Del	TT	-	p.636_637del
LIHC	TCGA-BW-A5NO-01	LBP	ENST00000217407.2	chr20	36997638:36997806:36999381:36999449:36999923:36999966,	36999382	36999449	36999383	36999383	Frame_Shift_Del	C	-	p.A384fs
LIHC	TCGA-DD-A4ND-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56699053	56699053	Frame_Shift_Del	A	-	p.E199fs
LIHC	TCGA-2Y-A9H0-01	AP3M2	ENST00000521280.1	chr8	42010602:42010623:42015458:42015630:42019798:42019936,	42015459	42015630	42015551	42015558	Frame_Shift_Del	ATTGGCTA	-	p.122_124del
LIHC	TCGA-G3-A7M6-01	ERI2	ENST00000300005.3	chr16	20800800:20800879:20802171:20802254:20810584:20810673,	20802172	20802254	20802201	20802219	Frame_Shift_Del	GTCCCCTGAGGCCAGATCA	-	p.257_263del
LIHC	TCGA-CC-A9FU-01	VTI1A	ENST00000489357.1,ENST00000489142.1,ENST00000432306.1,ENST00000393077.2,ENST00000494728.1,ENST00000496445.1,ENST00000480057.1	chr10	114207116:114207225:114220282:114220341:114224305:114224416,	114220283	114220341	114220309	114220315	Frame_Shift_Del	GTGGAGA	-	p.40_42del
LIHC	TCGA-EP-A2KA-01	BACE1	ENST00000530824.1,ENST00000428381.2,ENST00000445823.2,ENST00000513780.1,ENST00000392937.6,ENST00000509916.1,ENST00000510630.1,ENST00000313005.6	chr11	117161349:117161375:117161615:117161765:117162427:117162529,	117161616	117161765	117161738	117161739	Frame_Shift_Ins	-	C	p.L324fs
LIHC	TCGA-RC-A7SK-01	SEC24A	ENST00000398844.2	chr5	134033588:134033747:134039448:134039622:134041016:134041127,	134039449	134039622	134039534	134039535	Frame_Shift_Ins	-	T	p.G784fs
LIHC	TCGA-RC-A7SK-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67699601	67699602	Frame_Shift_Ins	-	T	p.T718fs
LIHC	TCGA-DD-AAE3-01	TAF4B	ENST00000400466.2,ENST00000418698.3,ENST00000269142.5	chr18	23865845:23866463:23872209:23872345:23873389:23873495,	23872210	23872345	23872237	23872237	Frame_Shift_Del	G	-	p.N539fs
LIHC	TCGA-2Y-A9H2-01	KANSL2	ENST00000420613.2,ENST00000357861.3,ENST00000546701.1	chr12	49073543:49073616:49075164:49075424:49075969:49075994,	49075165	49075424	49075410	49075430	Frame_Shift_Del	GTTCATAACCAAAACCTGCGG	-	.
LIHC	TCGA-2Y-A9H2-01	KANSL2	ENST00000550931.1	chr12	49073543:49073616:49075353:49075424:49075969:49075994,	49075354	49075424	49075410	49075430	Frame_Shift_Del	GTTCATAACCAAAACCTGCGG	-	.
LIHC	TCGA-2Y-A9H2-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439158	52439167	Frame_Shift_Del	CTAGAAAGGC	-	p.359_362del
LIHC	TCGA-DD-A73G-01	RPS23	ENST00000507980.1,ENST00000512493.1,ENST00000510019.1,ENST00000510210.1	chr5	81572269:81572337:81573511:81573671:81574138:81574160,	81573512	81573671	81573513	81573514	Frame_Shift_Ins	-	T	p.V55fs
LIHC	TCGA-WQ-A9G7-01	PPP6R2	ENST00000216061.5	chr22	50878389:50878478:50879229:50879455:50882294:50882546,	50879230	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.A845fs
LIHC	TCGA-WQ-A9G7-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000359139.3,ENST00000401672.3,ENST00000427222.2	chr22	50878389:50878478:50879250:50879455:50882294:50882546,	50879251	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.A845fs
LIHC	TCGA-WQ-A9G7-01	MPP5	ENST00000261681.4,ENST00000555925.1	chr14	67768105:67768183:67768688:67768835:67769126:67769288,	67768689	67768835	67768752	67768755	Frame_Shift_Del	GAGA	-	p.239_240del
LIHC	TCGA-WQ-A9G7-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437802	52437803	Frame_Shift_Del	TT	-	p.453_454del
LIHC	TCGA-WQ-A9G7-01	DEPDC1	ENST00000456315.2	chr1	68947122:68947295:68947728:68948580:68949632:68949773,	68947729	68948580	68948426	68948427	Frame_Shift_Ins	-	T	p.N355fs
LIHC	TCGA-WQ-A9G7-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
LIHC	TCGA-WQ-A9G7-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000409769.2,ENST00000473565.1,ENST00000409403.2	chr2	201721613:201721708:201722440:201722607:201722695:201722812,	201722441	201722607	201722550	201722550	Frame_Shift_Del	A	-	p.E284fs
LIHC	TCGA-WQ-A9G7-01	CLK1	ENST00000461981.1	chr2	201721404:201721534:201721613:201722607:201722695:201722812,	201721614	201722607	201722550	201722550	Frame_Shift_Del	A	-	p.E284fs
LIHC	TCGA-WQ-A9G7-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38123492:38126718:38128842:38129056:38132027:38132142,	38128843	38129056	38128905	38128906	Frame_Shift_Del	TT	-	p.649_650del
LIHC	TCGA-WQ-A9G7-01	ARFGAP1	ENST00000520485.1,ENST00000518794.2,ENST00000370283.4,ENST00000523460.1,ENST00000519273.2,ENST00000549047.1,ENST00000468975.2	chr20	61917005:61917065:61917717:61917794:61918915:61919040,	61917718	61917794	61917759	61917760	Frame_Shift_Ins	-	T	p.T300fs
LIHC	TCGA-WQ-A9G7-01	ARFGAP1	ENST00000519604.1,ENST00000353546.3,ENST00000547204.1	chr20	61917005:61917065:61917723:61917794:61918915:61919040,	61917724	61917794	61917759	61917760	Frame_Shift_Ins	-	T	p.T300fs
LIHC	TCGA-WQ-A9G7-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255558	9255559	Frame_Shift_Ins	-	A	p.E765fs
LIHC	TCGA-WQ-A9G7-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124209	12124209	Frame_Shift_Del	C	-	p.T1394fs
LIHC	TCGA-WQ-A9G7-01	ULK1	ENST00000541761.1,ENST00000321867.4	chr12	132401497:132401607:132401955:132402099:132403041:132403226,	132401956	132402099	132402065	132402066	Frame_Shift_Ins	-	C	p.T764fs
LIHC	TCGA-WQ-A9G7-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828444	61828444	Frame_Shift_Del	T	-	p.S4066fs
LIHC	TCGA-RC-A6M3-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000495878.1,ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72406586:72406673:72406762:72406910:72407593:72407697,	72406763	72406910	72406835	72406836	Frame_Shift_Ins	-	TGGGA	p.Q1116fs
LIHC	TCGA-2Y-A9GU-01	MEP1B	ENST00000581447.1,ENST00000269202.6	chr18	29784144:29784323:29787214:29787433:29788081:29788234,	29787215	29787433	29787402	29787403	Frame_Shift_Del	TC	-	p.245_245del
LIHC	TCGA-2Y-A9GU-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450034	85450035	Frame_Shift_Ins	-	A	p.A488fs
LIHC	TCGA-2Y-A9H1-01	FGB	ENST00000498375.2	chr4	155484189:155484284:155486337:155487151:155487640:155487674,	155486338	155487151	155487089	155487090	Frame_Shift_Ins	-	A	p.Q82fs
LIHC	TCGA-2Y-A9H1-01	FGB	ENST00000497097.1,ENST00000502545.1	chr4	155484189:155484284:155486959:155487151:155487640:155487674,	155486960	155487151	155487089	155487090	Frame_Shift_Ins	-	A	p.Q82fs
LIHC	TCGA-2Y-A9H1-01	DEF8	ENST00000567874.1,ENST00000268676.7,ENST00000570182.1,ENST00000563795.1,ENST00000563594.1,ENST00000569453.1	chr16	90028144:90028272:90028419:90028533:90029770:90029851,	90028420	90028533	90028418	90028495	Frame_Shift_Del	CTGGTTGGGTGTTGCCCGCTGCACGGGCCCTGGGTGGGTGTGAGAGGTGTCACCCGGCCGTGCCTGGCAGGTTTCTCG	-	p.331_333del
LIHC	TCGA-2Y-A9H7-01	ISYNA1	ENST00000457269.4	chr19	18547190:18547289:18547782:18547915:18548408:18548570,18547656:18547687:18547782:18547915:18548408:18548570,18547656:18547687:18547782:18547915:18548669:18548798,	18547783	18547915	18547823	18547824	Frame_Shift_Del	CG	-	p.125_126del
LIHC	TCGA-2Y-A9GZ-01	PRUNE2	ENST00000223609.6,ENST00000426088.1	chr9	79239938:79239974:79244107:79244206:79251386:79251473,79229452:79229516:79244107:79244206:79251386:79251473,	79244108	79244206	79244125	79244125	Frame_Shift_Del	A	-	p.P3045fs
LIHC	TCGA-2Y-A9GZ-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283302	74283306	Frame_Shift_Del	AGAGG	-	p.448_449del
LIHC	TCGA-2Y-A9GZ-01	NCOA3	ENST00000372004.3,ENST00000371998.3	chr20	46256665:46256767:46262239:46262380:46262791:46262939,	46262240	46262380	46262325	46262326	Frame_Shift_Ins	-	T	p.R303fs
LIHC	TCGA-2Y-A9GZ-01	MDGA1	ENST00000502298.1	chr6	37612272:37612425:37614043:37614151:37614948:37615048,	37614044	37614151	37614119	37614120	Frame_Shift_Ins	-	A	p.I693fs
LIHC	TCGA-2Y-A9GZ-01	MDGA1	ENST00000505425.1,ENST00000434837.3	chr6	37613708:37613732:37613973:37614151:37614948:37615048,	37613974	37614151	37614119	37614120	Frame_Shift_Ins	-	A	p.I693fs
LIHC	TCGA-FV-A2QQ-01	CTSB	ENST00000531089.1,ENST00000533455.1,ENST00000353047.6,ENST00000534510.1,ENST00000530290.1,ENST00000453527.2,ENST00000415599.2,ENST00000530640.2,ENST00000532409.1,ENST00000345125.3,ENST00000434271.1,ENST00000531551.1,ENST00000420692.2	chr8	11704625:11704677:11705187:11705331:11705575:11705661,	11705188	11705331	11705274	11705274	Frame_Shift_Del	G	-	p.P197fs
LIHC	TCGA-DD-A1EE-01	SLC30A10	ENST00000536446.1,ENST00000356609.2,ENST00000366926.3	chr1	220088790:220089290:220091596:220091836:220100369:220100447,	220091597	220091836	220091827	220091827	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-DD-A1EE-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283297	74283298	Frame_Shift_Ins	-	T	p.L447fs
LIHC	TCGA-DD-A1EE-01	COL20A1	ENST00000479501.1,ENST00000358894.6,ENST00000326996.6	chr20	61937232:61937412:61938841:61939000:61939322:61939442,61937232:61937391:61938841:61939000:61939322:61939442,	61938842	61939000	61938948	61938948	Frame_Shift_Del	C	-	p.F201fs
LIHC	TCGA-DD-A1EE-01	SUV39H2	ENST00000354919.6	chr10	14923498:14923644:14938844:14939516:14941537:14941684,	14938845	14939516	14939003	14939003	Frame_Shift_Del	A	-	p.P112fs
LIHC	TCGA-DD-A1EE-01	ALDH1L2	ENST00000549335.1,ENST00000552270.1,ENST00000258494.9	chr12	105428077:105428176:105431880:105431980:105433490:105433584,	105431881	105431980	105431912	105431919	Frame_Shift_Del	TTAAATAT	-	p.703_705del
LIHC	TCGA-DD-A1EE-01	RPS6KL1	ENST00000555834.1	chr14	75375552:75375635:75375803:75376851:75377950:75377979,	75375804	75376851	75376302	75376303	Frame_Shift_Ins	-	C	p.E405fs
LIHC	TCGA-DD-A1EE-01	RPS6KL1	ENST00000358328.4,ENST00000354625.2,ENST00000557413.1,ENST00000555009.1,ENST00000555647.1	chr14	75375803:75375893:75376245:75376851:75377950:75377979,	75376246	75376851	75376302	75376303	Frame_Shift_Ins	-	C	p.E405fs
LIHC	TCGA-DD-AAE2-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548579	212548580	Frame_Shift_Ins	-	A	p.V344fs
LIHC	TCGA-DD-AAE2-01	PISD	ENST00000266095.5,ENST00000422020.1,ENST00000442379.1,ENST00000382151.2,ENST00000397500.1	chr22	32017847:32017871:32019669:32019835:32026789:32026810,32017847:32017871:32019669:32019835:32021566:32021772,32017847:32017871:32019669:32019835:32021748:32022002,	32019670	32019835	32019822	32019822	Frame_Shift_Del	G	-	p.Q23fs
LIHC	TCGA-DD-AAE2-01	THOP1	ENST00000589087.1,ENST00000590970.1,ENST00000591363.1,ENST00000307741.6,ENST00000587401.1,ENST00000586677.1	chr19	2808355:2808442:2810301:2810488:2810637:2810660,	2810302	2810488	2810300	2810337	Frame_Shift_Del	CCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCG	-	p.486_486del
LIHC	TCGA-FV-A3R3-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81412242	81412243	Frame_Shift_Ins	-	A	p.Q496fs
LIHC	TCGA-DD-AADG-01	EFCAB7	ENST00000371088.4	chr1	64017395:64017505:64021028:64021186:64022784:64022918,	64021029	64021186	64021164	64021165	Frame_Shift_Ins	-	TA	p.L398fs
LIHC	TCGA-DD-AADG-01	ALB	ENST00000415165.2,ENST00000484992.1,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74280751:74280884:74281972:74282070:74283804:74283820,74280751:74280884:74281972:74282070:74283247:74283331,	74281973	74282070	74282058	74282071	Frame_Shift_Del	AATTCCAGAATGCG	-	p.426_430del
LIHC	TCGA-DD-AADG-01	DAPK1	ENST00000469067.1,ENST00000469640.2,ENST00000408954.3,ENST00000496522.1,ENST00000358077.5,ENST00000472284.1,ENST00000491893.1,ENST00000489291.1	chr9	90113920:90114054:90219868:90220090:90252857:90252942,	90219869	90220090	90219888	90219888	Frame_Shift_Del	A	-	p.V27fs
LIHC	TCGA-DD-A4NB-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263483	1263484	Frame_Shift_Del	AG	-	p.1791_1791del
LIHC	TCGA-DD-A4NB-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131436	202131437	Frame_Shift_Ins	-	AG	p.I135fs
LIHC	TCGA-DD-A4NB-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131436	202131437	Frame_Shift_Ins	-	AG	p.I135fs
LIHC	TCGA-DD-A1ED-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31604973	31604973	Frame_Shift_Del	A	-	p.T511fs
LIHC	TCGA-DD-AACK-01	CDK18	ENST00000504648.1,ENST00000506784.1,ENST00000509056.1,ENST00000429964.2,ENST00000360066.2,ENST00000489617.1,ENST00000515494.1,ENST00000505932.1	chr1	205496955:205497045:205497175:205497296:205498126:205498224,	205497176	205497296	205497176	205497219	Frame_Shift_Del	GACTGGCCAGGGCCAAGTCAGTGCCCACAAAGACTTACTCCAAT	-	p.315_329del
LIHC	TCGA-DD-AAD0-01	RCOR3	ENST00000526255.1	chr1	211477424:211477482:211486061:211486303:211486765:211486816,211485696:211485829:211486061:211486303:211486765:211486816,	211486062	211486303	211486101	211486105	Frame_Shift_Del	ATGTA	-	p.372_373del
LIHC	TCGA-DD-AAD0-01	RCOR3	ENST00000529763.1	chr1	211477424:211477482:211486061:211486177:211486765:211486816,	211486062	211486177	211486101	211486105	Frame_Shift_Del	ATGTA	-	p.372_373del
LIHC	TCGA-DD-AAD0-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000595618.1	chr19	17296729:17296810:17298743:17298854:17301905:17302028,	17298744	17298854	17298768	17298768	Frame_Shift_Del	C	-	p.E867fs
LIHC	TCGA-DD-AAD0-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19905517	19905544	Frame_Shift_Del	TCCAGTATGAATTATCTTATGTTCAGTT	-	p.385_394del
LIHC	TCGA-G3-A7M9-01	SPHK1	ENST00000545180.1,ENST00000588682.1,ENST00000590379.1,ENST00000323374.4,ENST00000592299.1,ENST00000392496.3	chr17	74381531:74381735:74382065:74382218:74382301:74382396,	74382066	74382218	74382080	74382096	Frame_Shift_Del	GGCGTGCTCCCGCGGCC	-	p.94_100del
LIHC	TCGA-G3-A7M9-01	HSP90AA1	ENST00000216281.8,ENST00000334701.7	chr14	102547385:102548158:102548447:102548781:102549370:102549639,	102548448	102548781	102548666	102548670	Frame_Shift_Del	GTTGA	-	p.745_746del
LIHC	TCGA-G3-A7M9-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578264	7578270	Frame_Shift_Del	GATAAGA	-	p.194_196del
LIHC	TCGA-CC-A3MC-01	EIF3E	ENST00000521614.1,ENST00000519517.1,ENST00000220849.5,ENST00000519030.1,ENST00000519627.1	chr8	109228704:109228742:109229562:109229689:109240495:109240620,	109229563	109229689	109229677	109229726	Frame_Shift_Del	TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC	-	p.241_246del
LIHC	TCGA-DD-AAEH-01	ZCRB1	ENST00000266529.3,ENST00000552673.1	chr12	42706732:42707000:42707491:42707567:42707675:42707788,	42707492	42707567	42707501	42707502	Frame_Shift_Del	TA	-	p.171_172del
LIHC	TCGA-DD-AAEH-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31288240:31288370:31289287:31289430:31308834:31308948,	31289288	31289430	31289337	31289337	Frame_Shift_Del	G	-	p.L421fs
LIHC	TCGA-WJ-A86L-01	PTCH1	ENST00000331920.6,ENST00000430669.2,ENST00000429896.2,ENST00000421141.1,ENST00000418258.1,ENST00000437951.1,ENST00000375271.4,ENST00000375274.2	chr9	98231219:98231435:98232094:98232213:98238315:98238441,	98232095	98232213	98232184	98232184	Frame_Shift_Del	G	-	p.M587fs
LIHC	TCGA-DD-AADD-01	FTCD	ENST00000359679.2,ENST00000397748.1,ENST00000446405.1	chr21	47556898:47556967:47557152:47557248:47558421:47558486,	47557153	47557248	47557204	47557205	Frame_Shift_Ins	-	A	p.F496fs
LIHC	TCGA-DD-AADD-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16612008	16612009	Frame_Shift_Ins	-	T	p.L135fs
LIHC	TCGA-DD-AADD-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000424310.2	chr5	158600990:158601166:158603639:158603875:158608967:158609059,	158603640	158603875	158603773	158603774	Frame_Shift_Ins	-	CAAGG	p.V193fs
LIHC	TCGA-DD-AAW3-01	FAM45A	ENST00000489988.1,ENST00000487888.1,ENST00000448258.2,ENST00000361432.2	chr10	120877030:120877179:120879852:120879964:120882980:120883081,	120879853	120879964	120879889	120879890	Frame_Shift_Ins	-	A	p.L173fs
LIHC	TCGA-DD-AAW3-01	RPS6KA3	ENST00000379548.4,ENST00000438357.1,ENST00000540702.1,ENST00000457145.1,ENST00000544447.1,ENST00000379565.3,ENST00000492128.1	chrX	20213182:20213263:20222139:20222221:20227405:20227522,	20222140	20222221	20222202	20222203	Frame_Shift_Ins	-	T	p.I88fs
LIHC	TCGA-DD-AAW3-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492921	68492921	Frame_Shift_Del	T	-	p.I119fs
LIHC	TCGA-DD-A1EG-01	ZNF562	ENST00000541032.1,ENST00000453372.2,ENST00000453792.2,ENST00000588653.1,ENST00000448622.1	chr19	9763496:9764554:9767222:9767329:9770054:9770143,9763496:9764554:9767222:9767329:9768684:9768811,9764433:9764557:9767222:9767329:9771395:9771497,9764433:9764557:9767222:9767329:9768684:9768811,	9767223	9767329	9767254	9767254	Frame_Shift_Del	A	-	p.L106fs
LIHC	TCGA-DD-A1EG-01	USP28	ENST00000537642.1	chr11	113702641:113702715:113704141:113704279:113711319:113711479,	113704142	113704279	113704215	113704215	Frame_Shift_Del	T	-	p.N229fs
LIHC	TCGA-DD-A1EG-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	555953:556013:556483:556564:562783:562845,	556484	556564	556513	556513	Frame_Shift_Del	C	-	p.V635fs
LIHC	TCGA-DD-A1EG-01	HNRNPUL1	ENST00000595806.1,ENST00000378215.4,ENST00000352456.3	chr19	41810147:41810166:41811550:41811772:41812353:41812830,	41811551	41811772	41811722	41811722	Frame_Shift_Del	C	-	p.P801fs
LIHC	TCGA-DD-A1EG-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000595018.1,ENST00000263367.3,ENST00000593587.1	chr19	41810147:41810166:41811580:41811772:41812353:41812830,	41811581	41811772	41811722	41811722	Frame_Shift_Del	C	-	p.P801fs
LIHC	TCGA-DD-A1EG-01	EGFR	ENST00000454757.2,ENST00000275493.2,ENST00000455089.1,ENST00000442591.1,ENST00000344576.2,ENST00000420316.2,ENST00000342916.3	chr7	55218986:55219055:55220238:55220357:55221703:55221845,	55220239	55220357	55220290	55220290	Frame_Shift_Del	C	-	p.S227fs
LIHC	TCGA-DD-A1EG-01	TMEFF2	ENST00000392314.1	chr2	192814742:192815133:192818404:192818563:192820980:192821102,192813768:192815190:192818404:192818563:192820980:192821104,	192818405	192818563	192818525	192818525	Frame_Shift_Del	T	-	p.K303fs
LIHC	TCGA-DD-A1EG-01	UNC13C	ENST00000545554.1,ENST00000260323.11,ENST00000561210.1,ENST00000537900.1	chr15	54624240:54624309:54625964:54626054:54630558:54630687,	54625965	54626054	54626040	54626040	Frame_Shift_Del	T	-	p.T1523fs
LIHC	TCGA-DD-A1EG-01	NEK11	ENST00000510823.1,ENST00000507910.1,ENST00000510688.1,ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000383366.4,ENST00000508196.1,ENST00000356918.4,ENST00000511262.1	chr3	130884273:130884363:130887673:130887781:130889616:130889731,	130887674	130887781	130887702	130887702	Frame_Shift_Del	A	-	p.E402fs
LIHC	TCGA-DD-A1EG-01	LONP2	ENST00000285737.4,ENST00000535754.1,ENST00000416006.3	chr16	48292528:48292651:48295334:48295498:48296688:48296783,	48295335	48295498	48295434	48295434	Frame_Shift_Del	A	-	p.E274fs
LIHC	TCGA-DD-A1EG-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379697.3,ENST00000379698.4	chrX	19649981:19650076:19663517:19663593:19688979:19689116,19649981:19650076:19663517:19663593:19701940:19702146,	19663518	19663593	19663542	19663542	Frame_Shift_Del	T	-	p.T260fs
LIHC	TCGA-DD-A1EG-01	PTPRM	ENST00000577468.1	chr18	8247871:8247917:8248147:8248174:8252485:8252497,8247871:8247917:8248147:8248174:8296365:8296453,	8248148	8248174	8248169	8248169	Frame_Shift_Del	T	-	p.I850fs
LIHC	TCGA-DD-A1EG-01	PIAS2	ENST00000545673.1	chr18	44435527:44435578:44444126:44444211:44470542:44471017,44435527:44435578:44444126:44444211:44497284:44497308,	44444127	44444211	44444168	44444168	Frame_Shift_Del	A	-	p.A182fs
LIHC	TCGA-DD-A1EG-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47314093:47314147:47315433:47315534:47317046:47317118,47312160:47312367:47315433:47315534:47317046:47317118,	47315434	47315534	47315481	47315481	Frame_Shift_Del	A	-	p.E1154fs
LIHC	TCGA-DD-A1EG-01	SLC17A1	ENST00000476801.1,ENST00000244527.4	chr6	25811865:25811998:25813058:25813220:25813322:25813441,	25813059	25813220	25813132	25813132	Frame_Shift_Del	A	-	p.F275fs
LIHC	TCGA-DD-A1EG-01	MTRF1	ENST00000430347.2,ENST00000379480.4,ENST00000379477.1	chr13	41797391:41797490:41800567:41800704:41808025:41808143,	41800568	41800704	41800662	41800662	Frame_Shift_Del	T	-	p.N344fs
LIHC	TCGA-DD-A1EG-01	SEC22C	ENST00000264454.3,ENST00000456515.1,ENST00000449617.1,ENST00000273156.7,ENST00000536332.1,ENST00000417572.1,ENST00000451653.1	chr3	42597422:42597487:42599069:42599188:42602608:42602788,	42599070	42599188	42599114	42599114	Frame_Shift_Del	G	-	p.L201fs
LIHC	TCGA-DD-A1EG-01	ZCCHC7	ENST00000496099.1,ENST00000461038.1,ENST00000336755.5,ENST00000497924.1,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2,ENST00000481507.1	chr9	37327795:37327831:37349353:37349449:37354706:37354799,	37349354	37349449	37349430	37349430	Frame_Shift_Del	A	-	p.Q355fs
LIHC	TCGA-DD-A1EG-01	SAMD3	ENST00000368134.2,ENST00000457563.2,ENST00000439090.2,ENST00000437477.2	chr6	130466484:130466567:130467154:130467326:130475969:130475998,	130467155	130467326	130467230	130467230	Frame_Shift_Del	A	-	p.S374X
LIHC	TCGA-DD-A1EG-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373660	242373660	Frame_Shift_Del	T	-	p.T318fs
LIHC	TCGA-DD-A1EG-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000469648.1	chr3	98541512:98541585:98544158:98544210:98568304:98568442,	98544159	98544210	98544174	98544174	Frame_Shift_Del	A	-	p.L203fs
LIHC	TCGA-DD-A1EG-01	PDE2A	ENST00000542969.2,ENST00000539367.1,ENST00000485058.3,ENST00000541998.1,ENST00000538749.1,ENST00000543575.1	chr11	72319705:72319795:72342121:72342183:72385180:72385452,72319705:72319795:72342121:72342183:72353297:72353370,	72342122	72342183	72342169	72342169	Frame_Shift_Del	G	-	p.L12fs
LIHC	TCGA-DD-A1EG-01	GGCT	ENST00000598361.1	chr7	30536692:30536851:30540151:30540297:30544184:30544415,30538418:30538554:30540151:30540297:30544184:30544415,30538418:30538554:30540151:30540297:30590251:30590397,	30540152	30540297	30540183	30540183	Frame_Shift_Del	T	-	p.M86fs
LIHC	TCGA-DD-A1EG-01	MED14	ENST00000324817.1	chrX	40560416:40560495:40562695:40562821:40568599:40568711,	40562696	40562821	40562784	40562784	Frame_Shift_Del	G	-	p.I442fs
LIHC	TCGA-DD-A1EG-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826417	129826417	Frame_Shift_Del	A	-	p.P2873fs
LIHC	TCGA-DD-A1EG-01	TRAK1	ENST00000484786.1,ENST00000487159.1	chr3	42128691:42128892:42166911:42167106:42218305:42218382,	42166912	42167106	42166974	42166974	Frame_Shift_Del	C	-	p.L51fs
LIHC	TCGA-DD-A1EG-01	NFATC1	ENST00000542384.1,ENST00000587635.1,ENST00000329101.4,ENST00000427363.2,ENST00000592223.1,ENST00000586434.1,ENST00000253506.5,ENST00000591814.1,ENST00000318065.5	chr18	77170402:77171501:77193578:77193738:77208781:77208984,	77193579	77193738	77193695	77193695	Frame_Shift_Del	G	-	p.R448fs
LIHC	TCGA-DD-A1EG-01	COPS6	ENST00000303904.3,ENST00000418625.1,ENST00000496358.1	chr7	99686915:99687038:99687237:99687369:99688021:99688110,	99687238	99687369	99687281	99687281	Frame_Shift_Del	G	-	p.E82fs
LIHC	TCGA-DD-A1EG-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56170970	56170970	Frame_Shift_Del	G	-	p.N599fs
LIHC	TCGA-DD-A1EG-01	ALS2CL	ENST00000434140.1,ENST00000415953.1,ENST00000318962.4,ENST00000431015.1,ENST00000450172.1	chr3	46723518:46723584:46724619:46724816:46725271:46725338,	46724620	46724816	46724741	46724741	Frame_Shift_Del	C	-	p.A330fs
LIHC	TCGA-DD-A1EG-01	ALS2CL	ENST00000423707.1	chr3	46723518:46723584:46724623:46724816:46725271:46725338,	46724624	46724816	46724741	46724741	Frame_Shift_Del	C	-	p.A330fs
LIHC	TCGA-DD-A1EG-01	SLC2A2	ENST00000382808.4,ENST00000497642.1,ENST00000314251.3,ENST00000469787.1	chr3	170715543:170715892:170715981:170716185:170716853:170716955,	170715982	170716185	170716076	170716076	Frame_Shift_Del	A	-	p.F427fs
LIHC	TCGA-DD-A1EG-01	SCML1	ENST00000380041.3	chrX	17755670:17755800:17763575:17763659:17764137:17764218,17762190:17762339:17763575:17763659:17764137:17764218,	17763576	17763659	17763578	17763578	Frame_Shift_Del	A	-	p.I12fs
LIHC	TCGA-DD-A1EG-01	CCDC80	ENST00000461431.1,ENST00000206423.3,ENST00000439685.2	chr3	112328824:112328928:112335556:112335705:112337814:112337951,	112335557	112335705	112335650	112335650	Frame_Shift_Del	A	-	p.F743fs
LIHC	TCGA-DD-A1EG-01	PARG	ENST00000402038.3	chr10	51073366:51073427:51077521:51077601:51087718:51087876,	51077522	51077601	51077558	51077558	Frame_Shift_Del	T	-	p.T678fs
LIHC	TCGA-DD-A1EG-01	IQCG	ENST00000490748.1,ENST00000265239.6,ENST00000453254.1,ENST00000416896.1,ENST00000455191.1	chr3	197652967:197652976:197659044:197659173:197665418:197665651,	197659045	197659173	197659165	197659165	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-DD-A1EG-01	BUB1	ENST00000535254.1,ENST00000409311.1,ENST00000302759.6,ENST00000466333.1	chr2	111399695:111399811:111406810:111406954:111408122:111408316,	111406811	111406954	111406915	111406915	Frame_Shift_Del	A	-	p.F748fs
LIHC	TCGA-DD-A1EG-01	TBC1D20	ENST00000354200.4,ENST00000494633.1,ENST00000461304.1	chr20	425693:425774:428532:428718:442979:443175,	428533	428718	428697	428697	Frame_Shift_Del	T	-	p.K31fs
LIHC	TCGA-DD-A1EG-01	DOT1L	ENST00000452696.1	chr19	2189730:2189794:2191082:2191239:2193687:2193782,	2191083	2191239	2191141	2191141	Frame_Shift_Del	C	-	p.S132fs
LIHC	TCGA-DD-A1EG-01	DOT1L	ENST00000398665.3	chr19	2189730:2189794:2191010:2191239:2193687:2193782,	2191011	2191239	2191141	2191141	Frame_Shift_Del	C	-	p.S132fs
LIHC	TCGA-DD-A1EG-01	STPG1	ENST00000337248.4,ENST00000440416.1,ENST00000468303.1,ENST00000003583.8,ENST00000374409.1	chr1	24687340:24687531:24696163:24696329:24700191:24700300,	24696164	24696329	24696176	24696176	Frame_Shift_Del	T	-	p.K242fs
LIHC	TCGA-DD-A1EG-01	APOA2	ENST00000481511.1	chr1	161192297:161192312:161192707:161193056:161193139:161193185,	161192708	161193056	161192790	161192790	Frame_Shift_Del	A	-	p.S35fs
LIHC	TCGA-DD-A1EG-01	APOA2	ENST00000463812.1	chr1	161192297:161192312:161192707:161192840:161193139:161193185,161192297:161192312:161192707:161192840:161193384:161193418,	161192708	161192840	161192790	161192790	Frame_Shift_Del	A	-	p.S35fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9275521:9275665:9279546:9279642:9280938:9283757,	9279547	9279642	9279637	9279637	Frame_Shift_Del	T	-	p.K1999fs
LIHC	TCGA-DD-A1EG-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281476	142281476	Frame_Shift_Del	A	-	p.Q257fs
LIHC	TCGA-DD-A1EG-01	ITM2C	ENST00000409704.2,ENST00000335005.6,ENST00000326427.6	chr2	231740394:231740523:231741571:231741682:231742114:231742265,	231741572	231741682	231741644	231741644	Frame_Shift_Del	C	-	p.L174fs
LIHC	TCGA-DD-A1EG-01	GUSB	ENST00000304895.4,ENST00000345660.6,ENST00000478118.1	chr7	65444464:65444528:65444713:65444898:65445210:65445392,	65444714	65444898	65444761	65444761	Frame_Shift_Del	G	-	p.T179fs
LIHC	TCGA-DD-A1EG-01	EFCAB13	ENST00000331493.2,ENST00000523842.1,ENST00000517484.1,ENST00000520776.1,ENST00000522326.1	chr17	45456547:45456619:45468802:45468946:45471390:45471465,	45468803	45468946	45468832	45468832	Frame_Shift_Del	A	-	p.D537fs
LIHC	TCGA-DD-A1EG-01	PDGFA	ENST00000354513.5	chr7	538129:538211:540067:540136:540752:540879,	540068	540136	540104	540104	Frame_Shift_Del	T	-	p.R205fs
LIHC	TCGA-DD-A1EG-01	ARAP1	ENST00000359373.5,ENST00000393609.3	chr11	72425196:72425366:72437664:72438217:72443559:72443642,	72437665	72438217	72437746	72437746	Frame_Shift_Del	G	-	p.P143fs
LIHC	TCGA-DD-A1EG-01	COL6A1	ENST00000361866.3	chr21	47417613:47417676:47418034:47418085:47418311:47418347,	47418035	47418085	47418082	47418082	Frame_Shift_Del	C	-	p.F524fs
LIHC	TCGA-DD-A1EG-01	KLHDC4	ENST00000568502.1,ENST00000565328.1,ENST00000562155.1	chr16	87764241:87764250:87788799:87788898:87795554:87795622,87782404:87782415:87788799:87788898:87795554:87795622,	87788800	87788898	87788891	87788891	Frame_Shift_Del	A	-	p.L93fs
LIHC	TCGA-DD-A1EG-01	KLHDC4	ENST00000566661.1	chr16	87782404:87782415:87788799:87790083:87795554:87795622,	87788800	87790083	87788891	87788891	Frame_Shift_Del	A	-	p.L93fs
LIHC	TCGA-DD-A1EG-01	MYO7B	ENST00000428314.1,ENST00000496841.1,ENST00000409090.1,ENST00000491278.1,ENST00000389524.4,ENST00000409816.2	chr2	128384549:128384667:128384758:128384885:128385946:128386110,	128384759	128384885	128384760	128384760	Frame_Shift_Del	C	-	p.G1419fs
LIHC	TCGA-DD-A1EG-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367677	66367677	Frame_Shift_Del	T	-	p.D120fs
LIHC	TCGA-DD-A1EG-01	ADAM22	ENST00000413139.1	chr7	87800858:87800876:87808249:87808444:87810819:87810920,	87808250	87808444	87808298	87808298	Frame_Shift_Del	T	-	p.S783fs
LIHC	TCGA-DD-A1EG-01	ADAM22	ENST00000398201.4,ENST00000265727.7,ENST00000426930.1,ENST00000398203.3	chr7	87800858:87800876:87808249:87808357:87810819:87810920,	87808250	87808357	87808298	87808298	Frame_Shift_Del	T	-	p.S783fs
LIHC	TCGA-DD-A1EG-01	CNGB1	ENST00000564448.1,ENST00000251102.8	chr16	57946833:57946898:57949152:57949239:57950032:57950083,	57949153	57949239	57949179	57949179	Frame_Shift_Del	G	-	p.L760fs
LIHC	TCGA-DD-A1EG-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327684	16327684	Frame_Shift_Del	G	-	p.S287fs
LIHC	TCGA-DD-A1EG-01	TTC38	ENST00000422713.1,ENST00000381031.3,ENST00000421359.1	chr22	46669794:46669966:46671144:46671318:46674482:46674558,	46671145	46671318	46671215	46671215	Frame_Shift_Del	A	-	p.L145fs
LIHC	TCGA-DD-A1EG-01	UIMC1	ENST00000506128.1,ENST00000510698.1	chr5	176402416:176402481:176409469:176409624:176433650:176433715,176402416:176402481:176409469:176409624:176449464:176449603,176402416:176402481:176409469:176409624:176433284:176433366,176402416:176402481:176409469:176409624:176433539:176433571,	176409470	176409624	176409596	176409596	Frame_Shift_Del	T	-	p.V8fs
LIHC	TCGA-DD-A1EG-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2	chr3	46477691:46477720:46479430:46479620:46480786:46480971,	46479431	46479620	46479553	46479553	Frame_Shift_Del	T	-	p.N659fs
LIHC	TCGA-DD-A1EG-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278579	114278579	Frame_Shift_Del	T	-	p.S2935fs
LIHC	TCGA-DD-A1EG-01	PCCB	ENST00000465176.1,ENST00000459873.1,ENST00000478469.1,ENST00000484181.1,ENST00000251654.4,ENST00000475214.1,ENST00000466072.1,ENST00000462542.1,ENST00000465423.1,ENST00000494742.1,ENST00000471595.1	chr3	135975396:135975465:135979320:135979377:135980793:135980852,	135979321	135979377	135979364	135979364	Frame_Shift_Del	A	-	p.Q159fs
LIHC	TCGA-DD-A1EG-01	PAPSS1	ENST00000514489.1,ENST00000502431.1,ENST00000265174.4	chr4	108608284:108608333:108614926:108615162:108622326:108622441,	108614927	108615162	108615045	108615045	Frame_Shift_Del	T	-	p.N98fs
LIHC	TCGA-DD-A1EG-01	CMBL	ENST00000296658.3	chr5	10280577:10280744:10282308:10282400:10286465:10286608,	10282309	10282400	10282342	10282342	Frame_Shift_Del	A	-	p.A176fs
LIHC	TCGA-DD-A1EG-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309403	46309403	Frame_Shift_Del	C	-	p.L556fs
LIHC	TCGA-DD-A1EG-01	CEP41	ENST00000223208.5,ENST00000484549.1,ENST00000485736.1	chr7	130038579:130038880:130039879:130040095:130040547:130040662,	130039880	130040095	130039927	130039927	Frame_Shift_Del	T	-	p.K309fs
LIHC	TCGA-DD-A1EG-01	KCTD13	ENST00000568995.1	chr16	29918283:29918429:29922298:29922494:29923135:29923188,29917673:29917887:29922298:29922494:29923135:29923188,	29922299	29922494	29922397	29922397	Frame_Shift_Del	C	-	p.D219fs
LIHC	TCGA-DD-A1EG-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459490	100459490	Frame_Shift_Del	G	-	p.K556fs
LIHC	TCGA-DD-A1EG-01	DPP3	ENST00000541961.1,ENST00000532019.1,ENST00000360510.2,ENST00000532677.1,ENST00000531863.1,ENST00000453114.1,ENST00000531354.2	chr11	66249759:66249941:66252643:66252733:66254010:66254063,	66252644	66252733	66252728	66252728	Frame_Shift_Del	C	-	p.L118fs
LIHC	TCGA-DD-A1EG-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437236	122437236	Frame_Shift_Del	A	-	p.Q1413fs
LIHC	TCGA-DD-A1EG-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56204319:56204403:56206091:56206349:56206513:56206631,	56206092	56206349	56206189	56206189	Frame_Shift_Del	C	-	p.S540fs
LIHC	TCGA-DD-A1EG-01	LILRB2	ENST00000314446.5,ENST00000391748.1	chr19	54781403:54781454:54781742:54781793:54782113:54782398,54781403:54781451:54781742:54781793:54782113:54782398,	54781743	54781793	54781769	54781769	Frame_Shift_Del	G	-	p.P428fs
LIHC	TCGA-DD-A1EG-01	HDX	ENST00000373177.2	chrX	83723935:83724583:83730258:83730405:83743031:83743140,	83730259	83730405	83730320	83730320	Frame_Shift_Del	T	-	p.N29fs
LIHC	TCGA-DD-A1EG-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56585671	56585671	Frame_Shift_Del	C	-	p.S51fs
LIHC	TCGA-DD-A1EG-01	HLA-DRB5	ENST00000374975.3	chr6	32486332:32486443:32487146:32487428:32489681:32489839,	32487147	32487428	32487268	32487268	Frame_Shift_Del	A	-	p.Q178fs
LIHC	TCGA-DD-A1EG-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143010	47143010	Frame_Shift_Del	A	-	p.T1652fs
LIHC	TCGA-DD-A1EG-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934727	223934727	Frame_Shift_Del	G	-	p.S196fs
LIHC	TCGA-DD-A1EG-01	BAIAP2L1	ENST00000005260.8	chr7	97937000:97937208:97939756:97939904:97941408:97941576,	97939757	97939904	97939854	97939854	Frame_Shift_Del	G	-	p.A287fs
LIHC	TCGA-DD-A1EG-01	TAF1A	ENST00000350027.4,ENST00000352967.4,ENST00000543857.1	chr1	222750786:222750985:222753100:222753214:222761784:222761907,222750786:222750985:222753100:222753214:222757469:222757639,	222753101	222753214	222753126	222753126	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A1EG-01	TAF1A	ENST00000465263.1	chr1	222750786:222750985:222753100:222753232:222757469:222757639,	222753101	222753232	222753126	222753126	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A1EG-01	TAF1A	ENST00000487009.1	chr1	222750786:222750985:222753100:222753167:222757469:222757639,	222753101	222753167	222753126	222753126	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A1EG-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904345	5904345	Frame_Shift_Del	G	-	p.L518fs
LIHC	TCGA-DD-A1EG-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48025968	48025968	Frame_Shift_Del	G	-	p.V282fs
LIHC	TCGA-DD-A1EG-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48025968	48025968	Frame_Shift_Del	G	-	p.V282fs
LIHC	TCGA-DD-A1EG-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694616	42694616	Frame_Shift_Del	C	-	p.L408fs
LIHC	TCGA-DD-A1EG-01	SLC1A1	ENST00000262352.3	chr9	4544566:4544707:4561448:4561541:4564343:4564458,	4561449	4561541	4561480	4561480	Frame_Shift_Del	A	-	p.G88fs
LIHC	TCGA-DD-A1EG-01	POLQ	ENST00000264233.5	chr3	121190836:121191011:121192196:121192334:121195386:121195580,	121192197	121192334	121192306	121192306	Frame_Shift_Del	G	-	p.P2145fs
LIHC	TCGA-DD-A1EG-01	TCN1	ENST00000257264.3,ENST00000534531.1	chr11	59623415:59623531:59626549:59626740:59628999:59629152,	59626550	59626740	59626598	59626598	Frame_Shift_Del	T	-	p.E234fs
LIHC	TCGA-DD-A1EG-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539266	187539266	Frame_Shift_Del	C	-	p.G2825fs
LIHC	TCGA-DD-A1EG-01	ADIPOR1	ENST00000367254.3,ENST00000436244.1,ENST00000426229.1,ENST00000340990.5,ENST00000417068.1	chr1	202915566:202915738:202917431:202917548:202920057:202920292,	202917432	202917548	202917518	202917518	Frame_Shift_Del	G	-	p.Q58fs
LIHC	TCGA-DD-A1EG-01	PNKP	ENST00000600910.1,ENST00000594661.1,ENST00000322344.3,ENST00000596014.1,ENST00000593946.1,ENST00000600573.1	chr19	50367580:50367660:50368383:50368683:50369655:50369702,	50368384	50368683	50368611	50368611	Frame_Shift_Del	C	-	p.D91fs
LIHC	TCGA-DD-A1EG-01	HERC2	ENST00000261609.7,ENST00000567869.1	chr15	28436110:28436202:28436284:28436390:28437106:28437297,	28436285	28436390	28436339	28436339	Frame_Shift_Del	T	-	p.M2835fs
LIHC	TCGA-DD-A1EG-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104327733:104328065:104331472:104331584:104332117:104332237,	104331473	104331584	104331534	104331534	Frame_Shift_Del	A	-	p.V268fs
LIHC	TCGA-DD-A1EG-01	CEACAM3	ENST00000357396.3,ENST00000415495.1,ENST00000221999.4	chr19	42314360:42314392:42314869:42314935:42315209:42315591,	42314870	42314935	42314895	42314895	Frame_Shift_Del	C	-	p.A218fs
LIHC	TCGA-DD-A1EG-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138867384:138867458:138869331:138869403:138870350:138870502,	138869332	138869403	138869386	138869386	Frame_Shift_Del	A	-	p.L516fs
LIHC	TCGA-DD-A1EG-01	LAMP1	ENST00000397181.3	chr13	113951699:113951810:113960799:113960921:113963957:113964020,	113960800	113960921	113960838	113960838	Frame_Shift_Del	A	-	p.V33fs
LIHC	TCGA-DD-A1EG-01	COL7A1	ENST00000454817.1,ENST00000328333.8	chr3	48630788:48630882:48630969:48631129:48631800:48631981,	48630970	48631129	48631052	48631052	Frame_Shift_Del	C	-	p.G115fs
LIHC	TCGA-DD-A1EG-01	COL9A2	ENST00000482722.1,ENST00000372748.3	chr1	40773117:40773171:40773374:40773428:40773863:40773917,	40773375	40773428	40773421	40773421	Frame_Shift_Del	G	-	p.P303fs
LIHC	TCGA-DD-A1EG-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372615	175372615	Frame_Shift_Del	C	-	p.V213fs
LIHC	TCGA-DD-A1EG-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115987018	115987018	Frame_Shift_Del	A	-	p.A1121fs
LIHC	TCGA-DD-A1EG-01	IFT88	ENST00000351808.5,ENST00000537103.1	chr13	21142023:21142136:21148518:21148614:21157095:21157155,21141304:21141395:21148518:21148614:21157095:21157155,	21148519	21148614	21148532	21148532	Frame_Shift_Del	A	-	p.Q12fs
LIHC	TCGA-DD-A1EG-01	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	281492	281492	Frame_Shift_Del	C	-	p.C586fs
LIHC	TCGA-DD-A1EG-01	TCP1	ENST00000544255.1,ENST00000539756.1,ENST00000420894.2,ENST00000392168.2,ENST00000321394.7	chr6	160201474:160201598:160201966:160202142:160204972:160205099,	160201967	160202142	160202000	160202000	Frame_Shift_Del	T	-	p.R314fs
LIHC	TCGA-DD-A1EG-01	DHX40	ENST00000538926.2,ENST00000425628.3,ENST00000251241.4,ENST00000451169.2	chr17	57654626:57654726:57656832:57656919:57657057:57657240,	57656833	57656919	57656854	57656854	Frame_Shift_Del	C	-	p.F365fs
LIHC	TCGA-DD-A1EG-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24916120:24916216:24920526:24920667:24927954:24928102,	24920527	24920667	24920612	24920612	Frame_Shift_Del	T	-	p.A298fs
LIHC	TCGA-DD-A1EG-01	CCDC171	ENST00000535968.1,ENST00000380701.3,ENST00000297641.3	chr9	15594038:15594170:15623264:15623411:15657124:15657217,	15623265	15623411	15623298	15623298	Frame_Shift_Del	A	-	p.K236fs
LIHC	TCGA-DD-A1EG-01	TAF2	ENST00000378164.2	chr8	120756527:120756633:120758944:120759174:120768245:120768355,	120758945	120759174	120759116	120759116	Frame_Shift_Del	A	-	p.G980fs
LIHC	TCGA-DD-A1EG-01	PHTF2	ENST00000470215.1,ENST00000307305.8,ENST00000422959.2,ENST00000248550.7,ENST00000416283.2	chr7	77572016:77572103:77578994:77579150:77580933:77581029,	77578995	77579150	77579071	77579071	Frame_Shift_Del	T	-	p.L645fs
LIHC	TCGA-DD-A1EG-01	DHX57	ENST00000460193.1,ENST00000295373.6,ENST00000457308.1	chr2	39029856:39030057:39033700:39033835:39040962:39041037,	39033701	39033835	39033812	39033812	Frame_Shift_Del	A	-	p.Q1236fs
LIHC	TCGA-DD-A1EG-01	C4orf47	ENST00000511138.1,ENST00000511581.1,ENST00000378850.4	chr4	186350543:186350665:186353135:186353355:186357199:186357285,	186353136	186353355	186353241	186353241	Frame_Shift_Del	T	-	p.I69fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000328556.5	chr1	225311228:225311316:225328469:225328723:225332098:225332330,	225328470	225328723	225328686	225328686	Frame_Shift_Del	A	-	p.L1473fs
LIHC	TCGA-DD-A1EG-01	HERC2	ENST00000261609.7	chr15	28362158:28362300:28366491:28366575:28369182:28369380,	28366492	28366575	28366565	28366565	Frame_Shift_Del	A	-	p.F4400fs
LIHC	TCGA-DD-A1EG-01	ANKRD20A4	ENST00000357336.3,ENST00000427650.2	chr9	69385604:69385719:69385881:69386055:69389938:69390045,	69385882	69386055	69386012	69386012	Frame_Shift_Del	A	-	p.E150fs
LIHC	TCGA-DD-A1EG-01	NPHP3	ENST00000326682.8,ENST00000337331.5,ENST00000469232.1,ENST00000343113.4	chr3	132437837:132437988:132438548:132438674:132440806:132440851,	132438549	132438674	132438560	132438560	Frame_Shift_Del	T	-	p.R170fs
LIHC	TCGA-DD-A1EG-01	DNAH6	ENST00000398278.2,ENST00000602588.1	chr2	84908480:84908652:84913607:84913681:84915562:84915717,	84913608	84913681	84913642	84913642	Frame_Shift_Del	T	-	p.Y2366fs
LIHC	TCGA-DD-A1EG-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938413	76938413	Frame_Shift_Del	T	-	p.R779fs
LIHC	TCGA-DD-A1EG-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181822	154181822	Frame_Shift_Del	G	-	p.P580fs
LIHC	TCGA-DD-A1EG-01	NCAPG	ENST00000251496.2	chr4	17816475:17816621:17816896:17816981:17818883:17819076,	17816897	17816981	17816898	17816898	Frame_Shift_Del	T	-	p.V231fs
LIHC	TCGA-DD-A1EG-01	MCM3AP	ENST00000397708.1,ENST00000291688.1	chr21	47699906:47700051:47700410:47700489:47703528:47703752,	47700411	47700489	47700452	47700452	Frame_Shift_Del	A	-	p.L494fs
LIHC	TCGA-DD-A1EG-01	PCMT1	ENST00000367384.2	chr6	150117550:150117636:150123335:150123505:150131751:150131937,	150123336	150123505	150123486	150123486	Frame_Shift_Del	A	-	p.D276fs
LIHC	TCGA-DD-A1EG-01	PCMT1	ENST00000367380.5,ENST00000544496.1,ENST00000464889.1	chr6	150117550:150117636:150123335:150123552:150131751:150131937,	150123336	150123552	150123486	150123486	Frame_Shift_Del	A	-	p.D276fs
LIHC	TCGA-DD-A1EG-01	MPG	ENST00000219431.4	chr16	128255:128332:129137:129330:129423:129699,	129138	129330	129299	129299	Frame_Shift_Del	C	-	p.T3fs
LIHC	TCGA-DD-A1EG-01	EFTUD2	ENST00000589769.1,ENST00000590977.1	chr17	42929077:42929185:42929776:42929930:42930663:42930758,42929077:42929185:42929776:42929930:42930884:42931003,	42929777	42929930	42929803	42929803	Frame_Shift_Del	A	-	p.S897fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105629	168105629	Frame_Shift_Del	A	-	p.Q2576fs
LIHC	TCGA-DD-A1EG-01	NTNG2	ENST00000393228.4,ENST00000360670.3,ENST00000372179.3	chr9	135037333:135037626:135041735:135042431:135073352:135073996,	135041736	135042431	135042407	135042407	Frame_Shift_Del	C	-	p.D63fs
LIHC	TCGA-DD-A1EG-01	CTIF	ENST00000256413.3	chr18	46284289:46284776:46287760:46288060:46343591:46343747,	46287761	46288060	46288021	46288021	Frame_Shift_Del	G	-	p.E446fs
LIHC	TCGA-DD-A1EG-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
LIHC	TCGA-DD-A1EG-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
LIHC	TCGA-DD-A1EG-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346583	29346583	Frame_Shift_Del	C	-	p.L165fs
LIHC	TCGA-DD-A1EG-01	PAK2	ENST00000426668.1,ENST00000327134.3	chr3	196539609:196539722:196541321:196541439:196544927:196545027,	196541322	196541439	196541368	196541368	Frame_Shift_Del	G	-	p.A327fs
LIHC	TCGA-DD-A1EG-01	PRR3	ENST00000498336.1	chr6	30525123:30525227:30525926:30525989:30529104:30529285,	30525927	30525989	30525950	30525950	Frame_Shift_Del	C	-	p.P43fs
LIHC	TCGA-DD-A1EG-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000554874.1,ENST00000381232.3	chr14	72191386:72191552:72196771:72197018:72200382:72200529,	72196772	72197018	72196875	72196875	Frame_Shift_Del	G	-	p.R1594fs
LIHC	TCGA-DD-A1EG-01	CDC73	ENST00000367435.3	chr1	193107214:193107303:193110979:193111196:193116996:193117095,	193110980	193111196	193111006	193111006	Frame_Shift_Del	A	-	p.E180fs
LIHC	TCGA-DD-A1EG-01	TM6SF1	ENST00000379390.6	chr15	83788329:83788433:83790672:83790755:83796109:83796229,	83790673	83790755	83790732	83790732	Frame_Shift_Del	T	-	p.V153fs
LIHC	TCGA-DD-A1EG-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324168	27324168	Frame_Shift_Del	T	-	p.S1071fs
LIHC	TCGA-DD-A1EG-01	PAPOLA	ENST00000555224.1,ENST00000557406.1	chr14	96987399:96987409:96991646:96991728:96993766:96993833,96987399:96987409:96991646:96991728:96994289:96994339,	96991647	96991728	96991682	96991682	Frame_Shift_Del	A	-	p.G95fs
LIHC	TCGA-DD-A1EG-01	AZI2	ENST00000479665.1,ENST00000295748.3,ENST00000463512.1,ENST00000492044.2	chr3	28368322:28368441:28373859:28373918:28378227:28378376,	28373860	28373918	28373874	28373874	Frame_Shift_Del	T	-	p.L212X
LIHC	TCGA-DD-A1EG-01	UBE2E1	ENST00000424381.1,ENST00000475680.1,ENST00000467766.1,ENST00000442670.1,ENST00000306627.3	chr3	23852950:23853001:23929057:23929190:23930602:23930707,	23929058	23929190	23929187	23929187	Frame_Shift_Del	A	-	p.P111fs
LIHC	TCGA-DD-A1EG-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R201fs
LIHC	TCGA-DD-A1EG-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20434540:20434608:20438482:20438617:20441343:20441749,	20438483	20438617	20438514	20438514	Frame_Shift_Del	A	-	p.E393fs
LIHC	TCGA-DD-A1EG-01	MAPK4	ENST00000592595.1	chr18	48086511:48086613:48189458:48190874:48241448:48241593,	48189459	48190874	48190827	48190827	Frame_Shift_Del	G	-	p.I166fs
LIHC	TCGA-DD-A1EG-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7894068	7894068	Frame_Shift_Del	T	-	p.L32fs
LIHC	TCGA-DD-A1EG-01	ATG5	ENST00000369076.3,ENST00000369070.1,ENST00000343245.3	chr6	106696024:106696119:106727535:106727698:106740902:106740981,	106727536	106727698	106727570	106727570	Frame_Shift_Del	T	-	p.D149fs
LIHC	TCGA-DD-A1EG-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41064555:41064746:41069761:41069935:41073820:41073962,	41069762	41069935	41069811	41069811	Frame_Shift_Del	T	-	p.E1688fs
LIHC	TCGA-DD-A1EG-01	KIF9	ENST00000352910.4,ENST00000444589.2	chr3	47277932:47278109:47282290:47282505:47286280:47286414,	47282291	47282505	47282419	47282419	Frame_Shift_Del	T	-	p.N599fs
LIHC	TCGA-DD-A1EG-01	DHX32	ENST00000284690.3	chr10	127541111:127541211:127542529:127542772:127548171:127548544,	127542530	127542772	127542640	127542640	Frame_Shift_Del	T	-	p.R328fs
LIHC	TCGA-DD-A1EG-01	MXRA7	ENST00000585519.1,ENST00000588114.1,ENST00000449428.2,ENST00000592148.1	chr17	74668632:74673784:74681153:74681247:74684194:74684254,74676858:74676961:74681153:74681247:74684194:74684254,	74681154	74681247	74681205	74681205	Frame_Shift_Del	C	-	p.G150fs
LIHC	TCGA-DD-A1EG-01	PRKAG2	ENST00000488258.1	chr7	151292430:151292540:151372505:151372723:151478237:151478517,	151372506	151372723	151372597	151372597	Frame_Shift_Del	G	-	p.P198fs
LIHC	TCGA-DD-A1EG-01	NAIP	ENST00000194097.4,ENST00000508426.2,ENST00000517649.1	chr5	70299602:70299684:70307101:70307201:70308174:70308745,	70307102	70307201	70307197	70307197	Frame_Shift_Del	T	-	p.Q192fs
LIHC	TCGA-DD-A1EG-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277223	238277223	Frame_Shift_Del	G	-	p.P1628fs
LIHC	TCGA-DD-A1EG-01	AGO2	ENST00000519980.1,ENST00000517293.1	chr8	141583000:141583031:141595217:141595410:141615895:141615987,141583000:141583031:141595217:141595410:141645583:141645645,	141595218	141595410	141595382	141595382	Frame_Shift_Del	G	-	p.I18fs
LIHC	TCGA-DD-A1EG-01	AKAP7	ENST00000368123.4,ENST00000431975.2	chr6	131520600:131520713:131540800:131540948:131602669:131603083,	131540801	131540948	131540900	131540900	Frame_Shift_Del	A	-	p.K267fs
LIHC	TCGA-DD-A1EG-01	GK5	ENST00000492097.1,ENST00000392993.2,ENST00000460544.1,ENST00000480757.1,ENST00000544571.1	chr3	141906545:141906621:141917643:141917775:141923536:141923630,	141917644	141917775	141917719	141917719	Frame_Shift_Del	A	-	p.T157fs
LIHC	TCGA-DD-A1EG-01	GTSE1	ENST00000454366.1	chr22	46693276:46693376:46704046:46704104:46704215:46704840,	46704047	46704104	46704068	46704068	Frame_Shift_Del	A	-	p.E34fs
LIHC	TCGA-DD-A1EG-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17144248:17144360:17150846:17151014:17153462:17153585,	17150847	17151014	17150951	17150951	Frame_Shift_Del	A	-	p.G766fs
LIHC	TCGA-DD-A1EG-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472174	77472174	Frame_Shift_Del	T	-	p.R699fs
LIHC	TCGA-DD-A1EG-01	PLXNA1	ENST00000251772.4	chr3	126708465:126708630:126710226:126710409:126722172:126722313,	126710227	126710409	126710277	126710277	Frame_Shift_Del	G	-	p.L415fs
LIHC	TCGA-DD-A1EG-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66946566:66946794:66947033:66947184:66947393:66947516,	66947034	66947184	66947073	66947073	Frame_Shift_Del	G	-	p.R339fs
LIHC	TCGA-DD-A1EG-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13356655	13356655	Frame_Shift_Del	T	-	p.K309fs
LIHC	TCGA-DD-A1EG-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48609935:48609971:48610103:48610172:48610294:48610375,	48610104	48610172	48610137	48610137	Frame_Shift_Del	T	-	p.G2290fs
LIHC	TCGA-DD-A1EG-01	SDS	ENST00000257549.4	chr12	113831696:113831821:113834969:113835197:113836319:113836411,	113834970	113835197	113835064	113835064	Frame_Shift_Del	C	-	p.D187fs
LIHC	TCGA-DD-A1EG-01	TTC39C	ENST00000304621.6,ENST00000579214.1,ENST00000317571.3,ENST00000540918.2	chr18	21694517:21694611:21698088:21698196:21703797:21703901,	21698089	21698196	21698147	21698147	Frame_Shift_Del	A	-	p.L379fs
LIHC	TCGA-DD-A1EG-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088158	109088158	Frame_Shift_Del	A	-	p.A791fs
LIHC	TCGA-DD-A1EG-01	NOB1	ENST00000268802.5,ENST00000564620.1	chr16	69778805:69778920:69782134:69782232:69782820:69783021,	69782135	69782232	69782138	69782138	Frame_Shift_Del	A	-	p.F274fs
LIHC	TCGA-DD-A1EG-01	UIMC1	ENST00000506128.1	chr5	176385093:176385155:176396053:176396292:176396601:176396707,	176396054	176396292	176396191	176396191	Frame_Shift_Del	T	-	p.T189fs
LIHC	TCGA-DD-A1EG-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000511320.1	chr5	176385093:176385155:176395555:176396292:176396601:176396707,	176395556	176396292	176396191	176396191	Frame_Shift_Del	T	-	p.T189fs
LIHC	TCGA-DD-A1EG-01	TMC4	ENST00000376591.4,ENST00000301187.4,ENST00000446291.1,ENST00000476013.2	chr19	54671896:54672018:54672173:54672406:54673249:54673398,	54672174	54672406	54672280	54672280	Frame_Shift_Del	G	-	p.P196fs
LIHC	TCGA-DD-A1EG-01	ALDH4A1	ENST00000290597.5,ENST00000538839.1,ENST00000375341.3,ENST00000538309.1	chr1	19211966:19212122:19212957:19213005:19215855:19215948,	19212958	19213005	19213000	19213000	Frame_Shift_Del	A	-	p.N86fs
LIHC	TCGA-DD-A1EG-01	MAP3K8	ENST00000263056.1,ENST00000375321.1,ENST00000542547.1	chr10	30739186:30739448:30740566:30740673:30747012:30747165,	30740567	30740673	30740592	30740592	Frame_Shift_Del	A	-	p.T264fs
LIHC	TCGA-DD-A1EG-01	NUDT6	ENST00000512116.1,ENST00000304430.5,ENST00000513517.1,ENST00000339154.2	chr4	123818778:123818833:123833722:123833778:123838655:123838859,	123833723	123833778	123833749	123833749	Frame_Shift_Del	T	-	p.I158fs
LIHC	TCGA-DD-A1EG-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47883106:47883227:47884595:47884745:47887189:47887342,	47884596	47884745	47884619	47884619	Frame_Shift_Del	G	-	p.V271fs
LIHC	TCGA-DD-A1EG-01	PLK1	ENST00000562272.1,ENST00000300093.4	chr16	23693384:23693478:23695190:23695410:23698789:23698945,	23695191	23695410	23695373	23695373	Frame_Shift_Del	C	-	p.D333fs
LIHC	TCGA-DD-A1EG-01	CDK5RAP2	ENST00000433194.2,ENST00000416449.1,ENST00000484546.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000480467.1,ENST00000349780.4,ENST00000474262.1,ENST00000425647.1	chr9	123151478:123151570:123152018:123152065:123156789:123156916,	123152019	123152065	123152026	123152026	Frame_Shift_Del	T	-	p.N1873fs
LIHC	TCGA-DD-A1EG-01	SLCO6A1	ENST00000379807.3,ENST00000514551.1,ENST00000389019.3,ENST00000506729.1	chr5	101755626:101755725:101774320:101774465:101794085:101794195,	101774321	101774465	101774421	101774421	Frame_Shift_Del	T	-	p.A393fs
LIHC	TCGA-DD-A1EG-01	PIK3CB	ENST00000462898.1	chr3	138456548:138456728:138461399:138461597:138474595:138474821,	138461400	138461597	138461437	138461437	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-DD-A1EG-01	PIK3CB	ENST00000289153.2,ENST00000477593.1	chr3	138456548:138456728:138461399:138461623:138474595:138474821,	138461400	138461623	138461437	138461437	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-DD-A1EG-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168098202:168098488:168100181:168100336:168110970:168111101,	168100182	168100336	168100194	168100194	Frame_Shift_Del	G	-	p.L1284fs
LIHC	TCGA-DD-A1EG-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44217757:44217891:44218027:44218336:44218784:44218950,	44218028	44218336	44218079	44218079	Frame_Shift_Del	A	-	p.E233fs
LIHC	TCGA-DD-A1EG-01	C5orf51	ENST00000509976.1,ENST00000381647.2	chr5	41907837:41907944:41909847:41909994:41911149:41911281,	41909848	41909994	41909898	41909898	Frame_Shift_Del	T	-	p.D86fs
LIHC	TCGA-DD-A1EG-01	CP	ENST00000481169.1,ENST00000264613.6,ENST00000490639.1	chr3	148926997:148927171:148927953:148928166:148930237:148930485,	148927954	148928166	148927955	148927955	Frame_Shift_Del	T	-	p.D203fs
LIHC	TCGA-DD-A1EG-01	TBCCD1	ENST00000338733.5,ENST00000424280.1,ENST00000446782.1	chr3	186268917:186269068:186272042:186272540:186272686:186272873,	186272043	186272540	186272330	186272330	Frame_Shift_Del	A	-	p.H420fs
LIHC	TCGA-DD-A1EG-01	TPM3	ENST00000368530.2,ENST00000271850.7	chr1	154145559:154145677:154148590:154148724:154155463:154155554,154145559:154145677:154148590:154148724:154163661:154163787,	154148591	154148724	154148611	154148611	Frame_Shift_Del	T	-	p.A120fs
LIHC	TCGA-DD-A1EG-01	TPM3	ENST00000312970.8	chr1	154145559:154145677:154148590:154148655:154155463:154155554,	154148591	154148655	154148611	154148611	Frame_Shift_Del	T	-	p.A120fs
LIHC	TCGA-DD-A1EG-01	IDH1	ENST00000446179.1,ENST00000345146.2,ENST00000415913.1	chr2	209108150:209108328:209110042:209110148:209113092:209113384,	209110043	209110148	209110110	209110110	Frame_Shift_Del	T	-	p.V152X
LIHC	TCGA-DD-A1EG-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888460:30888544:30890136:30890197:30890852:30890948,	30890137	30890197	30890192	30890192	Frame_Shift_Del	A	-	p.S176fs
LIHC	TCGA-DD-A1EG-01	OGT	ENST00000488174.1,ENST00000373719.3,ENST00000373701.3	chrX	70782696:70782867:70782979:70783096:70783178:70783349,	70782980	70783096	70783055	70783055	Frame_Shift_Del	A	-	p.L741fs
LIHC	TCGA-DD-A1EG-01	HMGXB3	ENST00000502717.1,ENST00000503427.1	chr5	149384413:149384552:149386035:149386210:149389673:149390171,	149386036	149386210	149386090	149386090	Frame_Shift_Del	C	-	p.L64fs
LIHC	TCGA-DD-A1EG-01	GK	ENST00000481024.1,ENST00000378943.3,ENST00000378946.3,ENST00000427190.1,ENST00000378945.3	chrX	30718530:30718566:30718954:30719022:30725672:30725715,	30718955	30719022	30719015	30719015	Frame_Shift_Del	A	-	p.A281fs
LIHC	TCGA-DD-A1EG-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108043363	108043363	Frame_Shift_Del	T	-	p.N783fs
LIHC	TCGA-DD-A1EG-01	APAF1	ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000552929.1,ENST00000551964.1,ENST00000357310.1	chr12	99117467:99117542:99119192:99119318:99120950:99121094,	99119193	99119318	99119233	99119233	Frame_Shift_Del	G	-	p.R1124fs
LIHC	TCGA-DD-A1EG-01	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44060593	44060593	Frame_Shift_Del	C	-	p.G141fs
LIHC	TCGA-DD-A1EG-01	RCCD1	ENST00000557266.1,ENST00000394258.2,ENST00000555155.1,ENST00000555737.1,ENST00000556618.1	chr15	91500342:91500733:91500833:91500955:91503129:91503208,	91500834	91500955	91500927	91500927	Frame_Shift_Del	G	-	p.A217fs
LIHC	TCGA-DD-A1EG-01	SLC35A3	ENST00000370153.1,ENST00000533028.1,ENST00000427993.2,ENST00000370156.3,ENST00000370155.3	chr1	100480857:100480976:100483237:100483371:100487941:100488512,	100483238	100483371	100483342	100483342	Frame_Shift_Del	T	-	p.Y328fs
LIHC	TCGA-DD-A1EG-01	TSPO	ENST00000583777.1,ENST00000396265.3	chr22	43547578:43547610:43557057:43557196:43558808:43559216,	43557058	43557196	43557161	43557161	Frame_Shift_Del	C	-	p.W95fs
LIHC	TCGA-DD-A1EG-01	FLOT1	ENST00000456573.2,ENST00000487376.1,ENST00000376389.3	chr6	30697813:30697963:30698204:30698342:30698458:30698504,	30698205	30698342	30698207	30698207	Frame_Shift_Del	G	-	p.Q363fs
LIHC	TCGA-DD-A1EG-01	ANKMY1	ENST00000401804.1,ENST00000272972.3,ENST00000391987.1	chr2	241465220:241465266:241465645:241465862:241468453:241468926,	241465646	241465862	241465814	241465814	Frame_Shift_Del	C	-	p.K246fs
LIHC	TCGA-DD-A1EG-01	GMCL1	ENST00000282570.3,ENST00000471404.1	chr2	70074674:70074759:70076783:70076874:70081954:70081992,	70076784	70076874	70076825	70076825	Frame_Shift_Del	A	-	p.L295X
LIHC	TCGA-DD-A1EG-01	TRIM31	ENST00000485864.1,ENST00000376734.3,ENST00000540829.1	chr6	30072972:30073019:30075829:30075945:30076802:30076825,	30075830	30075945	30075888	30075888	Frame_Shift_Del	T	-	p.L276fs
LIHC	TCGA-DD-A1EG-01	EIF3M	ENST00000532444.1,ENST00000323213.5,ENST00000533439.1,ENST00000531120.1,ENST00000530026.1	chr11	32610193:32610278:32610557:32610681:32611092:32611149,	32610558	32610681	32610663	32610663	Frame_Shift_Del	C	-	p.I140fs
LIHC	TCGA-DD-A1EG-01	FANCI	ENST00000566895.1,ENST00000310775.7	chr15	89836172:89836294:89837063:89837228:89843030:89843197,89836172:89836294:89837063:89837228:89838145:89838325,	89837064	89837228	89837107	89837107	Frame_Shift_Del	A	-	p.Y778X
LIHC	TCGA-DD-A1EG-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17662248:17662301:17665469:17665616:17669205:17669259,	17665470	17665616	17665533	17665533	Frame_Shift_Del	T	-	p.P385fs
LIHC	TCGA-DD-A1EG-01	BBS2	ENST00000562012.1,ENST00000568104.1,ENST00000245157.5	chr16	56533743:56533819:56534765:56534937:56535264:56535409,	56534766	56534937	56534909	56534909	Frame_Shift_Del	A	-	p.A419fs
LIHC	TCGA-DD-A1EG-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143007	47143007	Frame_Shift_Del	G	-	p.T1653fs
LIHC	TCGA-DD-A1EG-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51160703	51160703	Frame_Shift_Del	G	-	p.R1467fs
LIHC	TCGA-DD-A1EG-01	MAPK15	ENST00000484654.1	chr8	144801512:144801652:144802399:144803010:144803400:144803526,	144802400	144803010	144802914	144802914	Frame_Shift_Del	C	-	p.S274fs
LIHC	TCGA-DD-A1EG-01	MAPK15	ENST00000338033.4	chr8	144802399:144802457:144802872:144803010:144803169:144803275,	144802873	144803010	144802914	144802914	Frame_Shift_Del	C	-	p.S274fs
LIHC	TCGA-DD-A1EG-01	SLC36A4	ENST00000534116.1,ENST00000529184.1,ENST00000326402.4	chr11	92899083:92899182:92901109:92901337:92913962:92914047,	92901110	92901337	92901154	92901154	Frame_Shift_Del	A	-	p.S242fs
LIHC	TCGA-DD-A1EG-01	ARHGEF1	ENST00000347545.4,ENST00000594044.1,ENST00000337665.4,ENST00000600274.1,ENST00000599589.1,ENST00000595897.1,ENST00000354532.3,ENST00000378152.4,ENST00000599846.1	chr19	42406735:42406808:42406933:42407048:42407456:42407557,	42406934	42407048	42407036	42407036	Frame_Shift_Del	G	-	p.I590fs
LIHC	TCGA-DD-A1EG-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638499	176638499	Frame_Shift_Del	T	-	p.A1033fs
LIHC	TCGA-DD-A1EG-01	ATG2A	ENST00000421419.2,ENST00000418259.1,ENST00000377264.3	chr11	64665557:64665642:64665732:64665834:64666107:64666314,	64665733	64665834	64665805	64665805	Frame_Shift_Del	G	-	p.T1568fs
LIHC	TCGA-DD-A1EG-01	CS	ENST00000548849.1	chr12	56669947:56669979:56676643:56676775:56677575:56677605,56676203:56676392:56676643:56676775:56679699:56679807,	56676644	56676775	56676682	56676682	Frame_Shift_Del	A	-	p.W121fs
LIHC	TCGA-DD-A1EG-01	RALY	ENST00000375114.3,ENST00000246194.3	chr20	32664507:32664621:32664833:32665051:32666310:32666351,	32664834	32665051	32664985	32664985	Frame_Shift_Del	G	-	p.Q270fs
LIHC	TCGA-DD-A1EG-01	CCDC14	ENST00000438440.2,ENST00000488653.2,ENST00000433542.2,ENST00000409697.3	chr3	123674923:123674962:123675201:123675274:123675586:123675642,	123675202	123675274	123675247	123675247	Frame_Shift_Del	A	-	p.N87fs
LIHC	TCGA-DD-A1EG-01	CCDC14	ENST00000495381.1	chr3	123667792:123667979:123674689:123675642:123679990:123680055,	123674690	123675642	123675247	123675247	Frame_Shift_Del	A	-	p.N87fs
LIHC	TCGA-DD-A1EG-01	HGD	ENST00000492108.1	chr3	120347212:120347376:120351993:120352175:120357301:120357428,120347212:120347376:120351993:120352175:120360435:120360540,	120351994	120352175	120352071	120352071	Frame_Shift_Del	G	-	p.H371fs
LIHC	TCGA-DD-A1EG-01	STXBP5L	ENST00000273666.6,ENST00000471262.1,ENST00000497029.1,ENST00000492541.1	chr3	120998651:120998803:121001112:121001184:121037321:121037387,	121001113	121001184	121001118	121001118	Frame_Shift_Del	T	-	p.N705fs
LIHC	TCGA-DD-A1EG-01	SHROOM1	ENST00000378676.1	chr5	132159314:132159456:132159541:132160111:132160306:132160308,132159314:132159456:132159541:132160111:132160709:132160765,	132159542	132160111	132159877	132159877	Frame_Shift_Del	G	-	p.T493fs
LIHC	TCGA-DD-A1EG-01	ADH1B	ENST00000506651.1,ENST00000515694.1,ENST00000394887.3,ENST00000305046.8	chr4	100228649:100229021:100231921:100232060:100232677:100232813,	100231922	100232060	100231959	100231959	Frame_Shift_Del	T	-	p.I356fs
LIHC	TCGA-DD-A1EG-01	PLOD2	ENST00000282903.5,ENST00000461497.1,ENST00000494950.1	chr3	145791073:145791139:145794568:145794682:145796902:145797044,145791073:145791139:145794568:145794682:145795648:145795711,	145794569	145794682	145794581	145794581	Frame_Shift_Del	A	-	p.E556fs
LIHC	TCGA-DD-A1EG-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000489159.1,ENST00000369039.5	chr1	150531762:150531942:150532236:150532381:150532535:150533143,	150532237	150532381	150532255	150532255	Frame_Shift_Del	G	-	p.Q987fs
LIHC	TCGA-DD-A1EG-01	CPNE7	ENST00000268720.5	chr16	89643997:89644129:89649851:89649936:89650104:89650122,89645264:89645404:89649851:89649936:89650104:89650122,	89649852	89649936	89649911	89649911	Frame_Shift_Del	G	-	p.R186fs
LIHC	TCGA-DD-A1EG-01	TUBGCP6	ENST00000439308.2	chr22	50658385:50658444:50658620:50660303:50660456:50660531,	50658621	50660303	50659190	50659190	Frame_Shift_Del	C	-	p.E1200fs
LIHC	TCGA-DD-A1EG-01	TUBGCP6	ENST00000248846.5	chr22	50658385:50658444:50658679:50660303:50660456:50660531,	50658680	50660303	50659190	50659190	Frame_Shift_Del	C	-	p.E1200fs
LIHC	TCGA-DD-A1EG-01	IFT52	ENST00000468420.1,ENST00000373039.4,ENST00000373030.3,ENST00000467024.1	chr20	42247579:42247666:42249496:42249565:42252530:42252685,	42249497	42249565	42249541	42249541	Frame_Shift_Del	C	-	p.N248fs
LIHC	TCGA-DD-A1EG-01	PITRM1	ENST00000451104.2,ENST00000224949.4,ENST00000380989.2	chr10	3207429:3207526:3207604:3207719:3208420:3208572,	3207605	3207719	3207693	3207693	Frame_Shift_Del	A	-	p.S149fs
LIHC	TCGA-DD-A1EG-01	CRTAM	ENST00000227348.4	chr11	122720775:122720922:122722400:122722553:122724650:122724794,	122722401	122722553	122722405	122722405	Frame_Shift_Del	A	-	p.L66X
LIHC	TCGA-DD-A1EG-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514647	169514647	Frame_Shift_Del	T	-	p.N265fs
LIHC	TCGA-DD-A1EG-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000591529.1,ENST00000587672.1,ENST00000589205.1,ENST00000426948.2,ENST00000443826.3	chr19	3011019:3011158:3013666:3013816:3014567:3014612,	3013667	3013816	3013796	3013796	Frame_Shift_Del	G	-	p.S263fs
LIHC	TCGA-DD-A1EG-01	TMEM63A	ENST00000366835.3	chr1	226054811:226054863:226055587:226055730:226058775:226058813,	226055588	226055730	226055702	226055702	Frame_Shift_Del	C	-	p.E134fs
LIHC	TCGA-DD-A1EG-01	WDR45B	ENST00000573656.1,ENST00000392325.4,ENST00000573616.1,ENST00000572583.1,ENST00000576517.1,ENST00000571835.1	chr17	80574493:80574521:80575171:80575273:80576918:80576960,	80575172	80575273	80575188	80575188	Frame_Shift_Del	T	-	p.R264fs
LIHC	TCGA-DD-A1EG-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000512408.2,ENST00000252050.4,ENST00000372647.2	chr6	43172097:43172277:43172485:43172595:43172670:43172853,	43172486	43172595	43172517	43172517	Frame_Shift_Del	C	-	p.S1457fs
LIHC	TCGA-DD-A1EG-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216229601:216229708:216230227:216230353:216232585:216232750,	216230228	216230353	216230250	216230250	Frame_Shift_Del	T	-	p.G2375fs
LIHC	TCGA-DD-A1EG-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75692380:75692497:75693070:75693281:75694192:75694311,	75693071	75693281	75693144	75693144	Frame_Shift_Del	C	-	p.G555fs
LIHC	TCGA-DD-A1EG-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000524984.1,ENST00000531879.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000528173.1,ENST00000527911.1	chr11	46396157:46396216:46396315:46396389:46396483:46396595,	46396316	46396389	46396358	46396358	Frame_Shift_Del	C	-	p.K710fs
LIHC	TCGA-DD-A1EG-01	UBAP2	ENST00000418786.2,ENST00000412543.1,ENST00000360802.1	chr9	33998784:33998862:34017047:34017187:34048822:34048870,33998784:33998862:34017047:34017187:34048875:34048927,	34017048	34017187	34017099	34017099	Frame_Shift_Del	T	-	p.P17fs
LIHC	TCGA-UB-A7MF-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832181	24832187	Frame_Shift_Del	TCAAGCG	-	p.1327_1329del
LIHC	TCGA-UB-A7MF-01	B3GNTL1	ENST00000572977.1,ENST00000576599.1,ENST00000320865.3,ENST00000571394.1	chr17	80914570:80914645:80915056:80915125:80915234:80915370,	80915057	80915125	80915065	80915065	Frame_Shift_Del	C	-	p.D308fs
LIHC	TCGA-UB-A7MF-01	FAM72A	ENST00000470041.1,ENST00000367128.3,ENST00000431655.2,ENST00000367129.2,ENST00000341209.5	chr1	206141445:206141523:206145453:206145578:206153956:206154049,	206145454	206145578	206145524	206145525	Frame_Shift_Ins	-	TC	p.F101fs
LIHC	TCGA-UB-A7MF-01	KANSL1	ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1,ENST00000576870.1,ENST00000573682.1,ENST00000572218.1	chr17	44109530:44109665:44110445:44110558:44110768:44110826,	44110446	44110558	44110522	44110526	Frame_Shift_Del	GCAGG	-	p.920_921del
LIHC	TCGA-DD-AADS-01	DHX35	ENST00000484417.1,ENST00000252011.3	chr20	37591002:37591050:37597723:37597857:37601201:37601294,	37597724	37597857	37597805	37597806	Frame_Shift_Ins	-	T	p.P41fs
LIHC	TCGA-DD-AADS-01	ZBTB44	ENST00000357899.4,ENST00000397753.1,ENST00000525842.1	chr11	130109706:130109791:130130750:130131824:130184269:130184486,	130130751	130131824	130131553	130131587	Frame_Shift_Del	CAACACATTCTTGTTCTCATCCTCGGCTTGGCCTA	-	p.61_73del
LIHC	TCGA-DD-AADS-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000513401.1,ENST00000514617.1,ENST00000507873.2	chr4	48541987:48542085:48542369:48542977:48544043:48544138,	48542370	48542977	48542570	48542570	Frame_Shift_Del	T	-	p.H2032fs
LIHC	TCGA-DD-A3A9-01	CDHR1	ENST00000332904.3	chr10	85971934:85972163:85972846:85973104:85978834:85979377,	85972847	85973104	85972935	85972935	Frame_Shift_Del	C	-	p.S624fs
LIHC	TCGA-DD-A3A9-01	PRKCB	ENST00000303531.7	chr16	24196851:24196888:24202410:24202551:24225978:24231932,	24202411	24202551	24202416	24202416	Frame_Shift_Del	G	-	p.M576fs
LIHC	TCGA-DD-A3A9-01	PKHD1L1	ENST00000378402.5	chr8	110400725:110400779:110401307:110401381:110402680:110402723,	110401308	110401381	110401347	110401347	Frame_Shift_Del	T	-	p.G221fs
LIHC	TCGA-DD-A3A9-01	RPS9	ENST00000436445.1,ENST00000445961.1,ENST00000302907.4,ENST00000441429.1,ENST00000495002.1,ENST00000391752.1,ENST00000484121.1,ENST00000391753.2,ENST00000402367.1	chr19	54705033:54705149:54705354:54705477:54711265:54711390,54705033:54705149:54705354:54705477:54710143:54710199,	54705355	54705477	54705416	54705416	Frame_Shift_Del	C	-	p.I53fs
LIHC	TCGA-DD-A3A9-01	SEMA6A	ENST00000257414.8,ENST00000509665.1,ENST00000343348.6,ENST00000510263.1,ENST00000515009.1	chr5	115833022:115833083:115837905:115838023:115840540:115840678,	115837906	115838023	115838016	115838016	Frame_Shift_Del	T	-	p.Q37fs
LIHC	TCGA-RC-A7S9-01	ATG16L1	ENST00000392020.4,ENST00000464645.1,ENST00000373525.5,ENST00000392021.3,ENST00000347464.5,ENST00000392018.1,ENST00000392017.4	chr2	234191327:234191399:234198499:234198620:234198893:234198994,	234198500	234198620	234198547	234198548	Frame_Shift_Ins	-	C	p.L417fs
LIHC	TCGA-DD-A3A8-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
LIHC	TCGA-G3-A25S-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283386	74283387	Frame_Shift_Del	TG	-	p.476_476del
LIHC	TCGA-G3-A25S-01	L3MBTL1	ENST00000468336.1,ENST00000430781.2,ENST00000427442.2,ENST00000418998.1,ENST00000444063.1,ENST00000473981.1,ENST00000373134.1,ENST00000373135.3	chr20	42143347:42143416:42143648:42143799:42143931:42144055,	42143649	42143799	42143656	42143656	Frame_Shift_Del	C	-	p.H148fs
LIHC	TCGA-G3-A25S-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283297	74283298	Frame_Shift_Ins	-	T	p.L447fs
LIHC	TCGA-CC-5261-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3	chr19	1112816:1112948:1113533:1113703:1114229:1114421,	1113534	1113703	1113608	1113609	Frame_Shift_Ins	-	C	p.L725fs
LIHC	TCGA-ZP-A9CV-01	MAZ	ENST00000322945.6,ENST00000545521.1,ENST00000219782.6	chr16	29818190:29818214:29818298:29819149:29819550:29819614,	29818299	29819149	29819111	29819111	Frame_Shift_Del	G	-	p.K335fs
LIHC	TCGA-DD-A3A6-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66136132:66136198:66188492:66188739:66190864:66191041,	66188493	66188739	66188664	66188665	Frame_Shift_Ins	-	A	p.I336fs
LIHC	TCGA-DD-A3A6-01	NF2	ENST00000334961.7,ENST00000353887.4	chr22	30035078:30035201:30038190:30038274:30050645:30050714,29999987:30000101:30038190:30038274:30050645:30050714,	30038191	30038274	30038257	30038258	Frame_Shift_Ins	-	A	p.Y144_A145delinsX
LIHC	TCGA-DD-A4NN-01	FHOD3	ENST00000592128.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34335081:34335274:34340570:34340745:34349227:34349389,	34340571	34340745	34340646	34340647	Frame_Shift_Ins	-	GT	p.E1326fs
LIHC	TCGA-CC-A8HT-01	ST7	ENST00000487459.1,ENST00000393446.2,ENST00000449366.1,ENST00000393447.4,ENST00000490039.1,ENST00000446490.1,ENST00000432298.1,ENST00000477742.1,ENST00000393443.1,ENST00000393451.3,ENST00000323984.3,ENST00000393444.3,ENST00000265437.5,ENST00000422922.1,ENST00000465133.1,ENST00000420755.1,ENST00000393449.1	chr7	116739815:116739898:116759614:116759774:116769846:116769863,	116759615	116759774	116759650	116759653	Frame_Shift_Del	TTCA	-	p.90_91del
LIHC	TCGA-CC-A8HT-01	PER1	ENST00000317276.4	chr17	8045966:8046153:8046583:8047194:8048068:8048165,	8046584	8047194	8046658	8046694	Frame_Shift_Del	CAGCAGCCCCCTCAGCACGGGGGAGCTCCTCCAGCTG	-	p.988_1000del
LIHC	TCGA-CC-A8HT-01	PER1	ENST00000581082.1,ENST00000354903.5,ENST00000582719.1,ENST00000317276.4	chr17	8048068:8048165:8049275:8049455:8049689:8049806,8048077:8048311:8049275:8049455:8049689:8049806,	8049276	8049455	8049299	8049299	Frame_Shift_Del	C	-	p.G732fs
LIHC	TCGA-DD-A3A1-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603722	95603722	Frame_Shift_Del	A	-	p.I447X
LIHC	TCGA-DD-A3A1-01	REXO4	ENST00000371942.3,ENST00000494045.1	chr9	136276123:136276193:136277418:136277612:136277897:136278041,	136277419	136277612	136277557	136277557	Frame_Shift_Del	C	-	p.E258fs
LIHC	TCGA-DD-A3A1-01	USP54	ENST00000466048.2,ENST00000339859.4,ENST00000408019.1,ENST00000428547.1	chr10	75260412:75260596:75264607:75264748:75265080:75265184,75260412:75260596:75264607:75264748:75265065:75265184,	75264608	75264748	75264616	75264616	Frame_Shift_Del	G	-	p.H1435fs
LIHC	TCGA-DD-A3A1-01	EYA1	ENST00000303824.7,ENST00000496494.1,ENST00000465115.1,ENST00000419131.1,ENST00000388743.2,ENST00000340726.3	chr8	72246331:72246409:72267016:72267144:72268696:72268721,	72267017	72267144	72267072	72267072	Frame_Shift_Del	G	-	p.K24fs
LIHC	TCGA-DD-A3A1-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32090198	32090198	Frame_Shift_Del	C	-	p.T2215fs
LIHC	TCGA-DD-A3A1-01	PITPNA	ENST00000576761.1	chr17	1442162:1442246:1444859:1444934:1451589:1451681,	1444860	1444934	1444911	1444911	Frame_Shift_Del	A	-	p.L108X
LIHC	TCGA-DD-A3A1-01	SIL1	ENST00000503732.1,ENST00000509534.1,ENST00000394817.2,ENST00000265195.5	chr5	138356859:138356981:138362489:138362681:138378308:138378371,	138362490	138362681	138362514	138362514	Frame_Shift_Del	A	-	p.D208fs
LIHC	TCGA-DD-A3A1-01	FOXK2	ENST00000473637.2,ENST00000335255.5	chr17	80541888:80542064:80543779:80544076:80544938:80545148,	80543780	80544076	80544026	80544026	Frame_Shift_Del	C	-	p.A509fs
LIHC	TCGA-DD-A3A1-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300978	179300978	Frame_Shift_Del	G	-	p.N227fs
LIHC	TCGA-DD-A3A1-01	TRIM33	ENST00000358465.2,ENST00000450349.2,ENST00000448034.1,ENST00000369543.2	chr1	114970369:114970516:114973419:114973534:114976238:114976355,	114973420	114973534	114973529	114973530	Frame_Shift_Ins	-	CAAC	p.K349_E350delinsSX
LIHC	TCGA-DD-A3A1-01	TRIM33	ENST00000358465.2,ENST00000450349.2,ENST00000448034.1,ENST00000369543.2	chr1	114970369:114970516:114973419:114973534:114976238:114976355,	114973420	114973534	114973529	114973563	Frame_Shift_Del	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	-	p.347_349del
LIHC	TCGA-2Y-A9GS-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283353	74283360	Frame_Shift_Del	TGAAGCAA	-	p.465_467del
LIHC	TCGA-UB-A7ME-01	USP48	ENST00000529637.1,ENST00000464577.1,ENST00000308271.9	chr1	22016466:22016592:22021558:22021714:22027990:22028095,	22021559	22021714	22021689	22021689	Frame_Shift_Del	T	-	p.K918fs
LIHC	TCGA-UB-A7ME-01	FASN	ENST00000306749.2	chr17	80038567:80038798:80039039:80039228:80039476:80039719,	80039040	80039228	80039126	80039126	Frame_Shift_Del	A	-	p.L2170fs
LIHC	TCGA-DD-AACI-01	TMC6	ENST00000322914.3,ENST00000593044.1,ENST00000588087.1,ENST00000322933.4,ENST00000586271.1,ENST00000392467.3,ENST00000306591.7,ENST00000590602.1,ENST00000589271.1	chr17	76120673:76120862:76120969:76121066:76121238:76121344,	76120970	76121066	76121042	76121042	Frame_Shift_Del	C	-	p.K188fs
LIHC	TCGA-DD-AACI-01	COQ6	ENST00000556588.1,ENST00000334571.2,ENST00000554341.2,ENST00000556299.1,ENST00000394026.4,ENST00000238709.4	chr14	74427875:74428078:74428157:74428273:74428439:74428606,	74428158	74428273	74428174	74428177	Frame_Shift_Del	GTCC	-	p.370_371del
LIHC	TCGA-DD-AACI-01	APP	ENST00000354192.3,ENST00000348990.5,ENST00000448388.2,ENST00000359726.3,ENST00000439274.2,ENST00000448850.1,ENST00000456209.2,ENST00000440126.3,ENST00000357903.3,ENST00000358918.3,ENST00000346798.3	chr21	27326903:27327003:27327940:27328069:27347382:27347532,	27327941	27328069	27328044	27328044	Frame_Shift_Del	T	-	p.K495fs
LIHC	TCGA-DD-AACM-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576854	7576860	Frame_Shift_Del	TGAAGGG	-	p.329_331del
LIHC	TCGA-DD-AAEA-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13621055	13621062	Frame_Shift_Del	AGTAAATC	-	p.257_258del
LIHC	TCGA-DD-AAEA-01	SAMHD1	ENST00000262878.4	chr20	35532559:35532652:35533766:35533906:35539620:35539736,	35533767	35533906	35533779	35533780	Frame_Shift_Ins	-	A	p.I466fs
LIHC	TCGA-DD-A4NG-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2	chr9	96214665:96214671:96233422:96233669:96238537:96238620,	96233423	96233669	96233651	96233652	Frame_Shift_Ins	-	T	p.I235fs
LIHC	TCGA-DD-A4NG-01	KPNA5	ENST00000368564.1,ENST00000356348.1	chr6	117013455:117013555:117019866:117019961:117023181:117023313,	117019867	117019961	117019926	117019927	Frame_Shift_Del	AA	-	p.133_134del
LIHC	TCGA-G3-A5SI-01	ANXA6	ENST00000523714.1,ENST00000377751.5,ENST00000521512.1,ENST00000356496.5,ENST00000354546.5	chr5	150481040:150481068:150483130:150483253:150484805:150484833,	150483131	150483253	150483246	150483246	Frame_Shift_Del	C	-	p.G616fs
LIHC	TCGA-G3-A5SI-01	DTNA	ENST00000348997.5,ENST00000269190.7,ENST00000399113.3,ENST00000444659.1,ENST00000269191.6	chr18	32407556:32407640:32418057:32418135:32428259:32428310,32409363:32409453:32418057:32418135:32418708:32418801,32407556:32407640:32418057:32418135:32418708:32418801,	32418058	32418135	32418068	32418068	Frame_Shift_Del	A	-	p.P368fs
LIHC	TCGA-G3-A5SI-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953741	48953742	Frame_Shift_Ins	-	G	p.L448fs
LIHC	TCGA-DD-AACB-01	PGLYRP2	ENST00000340880.4	chr19	15582700:15582911:15586348:15587419:15590121:15590246,	15586349	15587419	15586526	15586526	Frame_Shift_Del	G	-	p.R319fs
LIHC	TCGA-DD-AACB-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903753	5903754	Frame_Shift_Ins	-	G	p.L321fs
LIHC	TCGA-DD-AACB-01	FASN	ENST00000306749.2	chr17	80050572:80050688:80050772:80050895:80051094:80051295,	80050773	80050895	80050789	80050793	Frame_Shift_Del	ATCTG	-	p.253_255del
LIHC	TCGA-DD-AACB-01	SSU72	ENST00000378725.3	chr1	1480242:1480382:1500152:1500296:1509857:1509964,	1500153	1500296	1500211	1500211	Frame_Shift_Del	C	-	p.D56fs
LIHC	TCGA-DD-AACB-01	USP54	ENST00000497106.1	chr10	75290461:75290593:75296026:75296195:75299201:75299351,	75296027	75296195	75296083	75296083	Frame_Shift_Del	G	-	p.P363fs
LIHC	TCGA-DD-AACB-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610330	10610330	Frame_Shift_Del	C	-	p.G127fs
LIHC	TCGA-KR-A7K7-01	SREBF1	ENST00000435530.2,ENST00000261646.5,ENST00000338854.5	chr17	17722857:17723039:17723403:17723835:17740040:17740131,	17723404	17723835	17723609	17723613	Frame_Shift_Del	TGGAG	-	p.135_137del
LIHC	TCGA-CC-A7II-01	POLDIP3	ENST00000348657.2,ENST00000445215.1,ENST00000252115.5,ENST00000491021.1	chr22	42981919:42981974:42983511:42983578:42987960:42988090,	42983512	42983578	42983538	42983538	Frame_Shift_Del	A	-	p.I355fs
LIHC	TCGA-CC-A7II-01	WIF1	ENST00000286574.4	chr12	65448897:65448993:65449810:65449906:65456260:65456356,	65449811	65449906	65449809	65449854	Frame_Shift_Del	GTAGCCCAGATTGGCAATGTGTATGGGGTACTTACGCTTTGAACAG	-	p.305_308del
LIHC	TCGA-CC-A7II-01	WIF1	ENST00000543094.1	chr12	65448897:65448993:65449852:65449906:65456260:65456356,	65449853	65449906	65449809	65449854	Frame_Shift_Del	GTAGCCCAGATTGGCAATGTGTATGGGGTACTTACGCTTTGAACAG	-	p.305_308del
LIHC	TCGA-CC-A7IG-01	NOL4	ENST00000586314.1,ENST00000535475.1,ENST00000590712.1,ENST00000586553.1	chr18	31463207:31463388:31523028:31523142:31538202:31538382,	31523029	31523142	31523091	31523097	Frame_Shift_Del	CCAAGAT	-	p.492_494del
LIHC	TCGA-WX-AA44-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2,ENST00000473584.1,ENST00000371513.5	chr1	53442354:53442441:53443888:53444039:53446067:53446125,	53443889	53444039	53443897	53443897	Frame_Shift_Del	C	-	p.S228fs
LIHC	TCGA-ED-A8O6-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472196	92472197	Frame_Shift_Ins	-	T	p.N708fs
LIHC	TCGA-EP-A26S-01	DCN	ENST00000549513.1,ENST00000052754.5,ENST00000393155.1,ENST00000550563.1,ENST00000552145.1,ENST00000552962.1,ENST00000547937.1	chr12	91540012:91540029:91558381:91558494:91572118:91572178,91552252:91552286:91558381:91558494:91572118:91572329,	91558382	91558494	91558424	91558424	Frame_Shift_Del	G	-	p.E95fs
LIHC	TCGA-DD-A1EF-01	MARS	ENST00000537638.2,ENST00000552914.1,ENST00000262027.5	chr12	57909702:57909774:57910027:57910120:57910217:57910347,	57910028	57910120	57910075	57910076	Frame_Shift_Ins	-	A	p.A837fs
LIHC	TCGA-DD-A3A3-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541512	29541512	Frame_Shift_Del	A	-	p.E479fs
LIHC	TCGA-DD-A3A3-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635624	32635625	Frame_Shift_Ins	-	T	p.E747fs
LIHC	TCGA-CC-5262-01	KIAA1958	ENST00000536272.1,ENST00000374244.3	chr9	115249357:115249398:115336336:115337531:115380150:115380234,	115336337	115337531	115336637	115336638	Frame_Shift_Ins	-	AGACACAGACTAGCCCTGTTGAA	p.E93fs
LIHC	TCGA-BD-A3EP-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148454074:148454242:148456395:148456446:148456639:148456730,	148456396	148456446	148456419	148456422	Frame_Shift_Del	CTGT	-	p.169_170del
LIHC	TCGA-BD-A3EP-01	SCFD1	ENST00000311943.7,ENST00000541123.1	chr14	31103152:31103243:31107330:31107453:31112521:31112611,	31107331	31107453	31107344	31107345	Frame_Shift_Ins	-	ACTAT	p.Q109fs
LIHC	TCGA-CC-A123-01	MTRF1L	ENST00000367233.5,ENST00000367231.5	chr6	153315647:153315811:153316270:153316454:153319684:153319764,	153316271	153316454	153316373	153316374	Frame_Shift_Ins	-	TT	p.E141fs
LIHC	TCGA-CC-A123-01	MTRF1L	ENST00000485512.1,ENST00000464135.1	chr6	153315647:153315811:153316270:153316429:153319684:153319764,	153316271	153316429	153316373	153316374	Frame_Shift_Ins	-	TT	p.E141fs
LIHC	TCGA-K7-A5RG-01	ADH5	ENST00000512621.1,ENST00000508511.1,ENST00000512991.1,ENST00000508146.1,ENST00000505652.1,ENST00000296412.8	chr4	100002515:100002603:100003125:100003267:100006265:100006367,	100003126	100003267	100003145	100003146	Frame_Shift_Ins	-	C	p.G79fs
LIHC	TCGA-K7-A5RG-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452975	195452978	Frame_Shift_Del	CCCA	-	p.329_330del
LIHC	TCGA-LG-A9QC-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84611654:84611834:84639235:84639389:84651024:84651057,	84639236	84639389	84639347	84639347	Frame_Shift_Del	G	-	p.P867fs
LIHC	TCGA-G3-A3CK-01	TMEM33	ENST00000513702.1,ENST00000508448.1,ENST00000325094.5,ENST00000504986.1	chr4	41940618:41940713:41941212:41941400:41945763:41945831,	41941213	41941400	41941291	41941298	Frame_Shift_Del	ATTACCAC	-	p.73_75del
LIHC	TCGA-G3-A3CK-01	VPS53	ENST00000573028.1,ENST00000437048.2,ENST00000576149.1,ENST00000291074.5,ENST00000446250.2,ENST00000571805.1	chr17	530465:530556:531327:531471:534789:534868,	531328	531471	531471	531479	Frame_Shift_Del	TCTAGTAAA	-	p.230_230del
LIHC	TCGA-G3-A3CK-01	AP1G2	ENST00000465445.2,ENST00000397120.3,ENST00000308724.5,ENST00000555118.1,ENST00000535852.2,ENST00000460049.2,ENST00000554982.1	chr14	24031577:24031624:24031712:24031802:24032588:24032711,	24031713	24031802	24031766	24031766	Frame_Shift_Del	C	-	p.E483fs
LIHC	TCGA-G3-A3CK-01	TMEM33	ENST00000513702.1,ENST00000508448.1,ENST00000325094.5,ENST00000504986.1	chr4	41940618:41940713:41941212:41941400:41945763:41945831,	41941213	41941400	41941283	41941289	Frame_Shift_Del	CATCAAA	-	p.70_72del
LIHC	TCGA-G3-A3CK-01	TMEM33	ENST00000513702.1,ENST00000508448.1,ENST00000325094.5,ENST00000504986.1	chr4	41940618:41940713:41941212:41941400:41945763:41945831,	41941213	41941400	41941283	41941298	Frame_Shift_Del	CATCAAAGATTACCAC	-	p.70_75del
LIHC	TCGA-G3-A3CK-01	NUMA1	ENST00000393695.3	chr11	71721852:71721900:71723446:71723488:71723940:71723972,	71723447	71723488	71723462	71723628	Frame_Shift_Del	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	-	p.1537_1546del
LIHC	TCGA-DD-A3A7-01	IMMP1L	ENST00000532624.1,ENST00000278200.1,ENST00000530023.1,ENST00000527184.1,ENST00000529749.1,ENST00000532287.1	chr11	31477859:31477933:31482172:31482261:31484718:31484852,	31482173	31482261	31482231	31482232	Frame_Shift_Ins	-	A	p.Q46fs
LIHC	TCGA-DD-A39Z-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	359972:360069:364542:364683:396147:396322,	364543	364683	364598	364598	Frame_Shift_Del	C	-	p.E322fs
LIHC	TCGA-G3-AAV4-01	ABHD11	ENST00000458339.1,ENST00000395147.4,ENST00000412965.1,ENST00000222800.3	chr7	73151975:73152065:73152657:73152793:73152975:73153069,	73152658	73152793	73152683	73152692	Frame_Shift_Del	ATCTTGGCGA	-	p.85_88del
LIHC	TCGA-G3-AAV4-01	ABHD11	ENST00000357419.4	chr7	73151891:73152065:73152662:73152793:73152975:73153069,	73152663	73152793	73152683	73152692	Frame_Shift_Del	ATCTTGGCGA	-	p.85_88del
LIHC	TCGA-G3-AAV4-01	ABHD11	ENST00000437775.2	chr7	73151975:73152065:73152657:73152772:73152975:73153069,	73152658	73152772	73152683	73152692	Frame_Shift_Del	ATCTTGGCGA	-	p.85_88del
LIHC	TCGA-ED-A82E-01	CD81	ENST00000481687.1,ENST00000527343.1,ENST00000464784.2,ENST00000492252.1,ENST00000381036.3,ENST00000468153.1,ENST00000475945.2,ENST00000492627.1,ENST00000263645.5,ENST00000524805.1,ENST00000526072.1	chr11	2416201:2416276:2416645:2416750:2417098:2417130,	2416646	2416750	2416714	2416715	Frame_Shift_Ins	-	AA	p.N141fs
LIHC	TCGA-ED-A82E-01	MED29	ENST00000596297.1,ENST00000599213.2,ENST00000315588.5,ENST00000594368.1	chr19	39882051:39882278:39883103:39883162:39884192:39884277,	39883104	39883162	39883132	39883133	Frame_Shift_Ins	-	GATTCAGAAC	p.L103fs
LIHC	TCGA-CC-A9FW-01	BSN	ENST00000296452.4	chr3	49697918:49699995:49700308:49701099:49701219:49701319,	49700309	49701099	49700524	49700524	Frame_Shift_Del	C	-	p.E3644fs
LIHC	TCGA-DD-A1EA-01	RPS6KL1	ENST00000555834.1	chr14	75375552:75375635:75375803:75376851:75377950:75377979,	75375804	75376851	75376302	75376303	Frame_Shift_Ins	-	C	p.E405fs
LIHC	TCGA-DD-A1EA-01	RPS6KL1	ENST00000358328.4,ENST00000354625.2,ENST00000557413.1,ENST00000555009.1,ENST00000555647.1	chr14	75375803:75375893:75376245:75376851:75377950:75377979,	75376246	75376851	75376302	75376303	Frame_Shift_Ins	-	C	p.E405fs
LIHC	TCGA-DD-A1EA-01	NSMCE2	ENST00000522563.1	chr8	126104120:126104200:126114558:126114729:126163412:126163519,	126114559	126114729	126114663	126114664	Frame_Shift_Ins	-	A	p.Q31fs
LIHC	TCGA-XR-A8TG-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000263915.3	chr2	165349332:165349692:165350940:165351034:165353517:165353562,	165350941	165351034	165350963	165350964	Frame_Shift_Ins	-	T	p.I485fs
LIHC	TCGA-XR-A8TG-01	LCAT	ENST00000573538.1	chr16	67974148:67974381:67976265:67976490:67976573:67976669,67974639:67974734:67976265:67976490:67976573:67976669,	67976266	67976490	67976467	67976468	Frame_Shift_Ins	-	CC	p.K183fs
LIHC	TCGA-DD-AAVV-01	FAU	ENST00000527548.1,ENST00000526555.1,ENST00000525297.1,ENST00000531743.1,ENST00000529639.1	chr11	64888228:64888278:64888452:64888508:64888971:64889011,	64888453	64888508	64888473	64888473	Frame_Shift_Del	C	-	p.V86fs
LIHC	TCGA-DD-A73C-01	TRPV6	ENST00000359396.3	chr7	142574576:142574590:142574894:142575032:142575403:142575526,	142574895	142575032	142574898	142574899	Frame_Shift_Del	AG	-	p.162_162del
LIHC	TCGA-DD-A73C-01	TRPV6	ENST00000489123.1	chr7	142574576:142574590:142574894:142575526:142575681:142575708,	142574895	142575526	142574898	142574899	Frame_Shift_Del	AG	-	p.162_162del
LIHC	TCGA-DD-A1EB-01	TMTC2	ENST00000321196.3,ENST00000548305.1	chr12	83081259:83081448:83250788:83251359:83289596:83290425,	83250789	83251359	83250884	83250885	Frame_Shift_Ins	-	C	p.G60fs
LIHC	TCGA-DD-A1EB-01	NPAS2	ENST00000486017.1,ENST00000427413.1,ENST00000448812.1,ENST00000542504.1,ENST00000335681.5	chr2	101549374:101549463:101554214:101554304:101564696:101564761,	101554215	101554304	101554302	101554302	Frame_Shift_Del	C	-	p.L120fs
LIHC	TCGA-G3-A3CH-01	TIAL1	ENST00000369093.2	chr10	121341680:121341735:121341970:121342120:121347663:121347722,	121341971	121342120	121342010	121342010	Frame_Shift_Del	A	-	p.A81fs
LIHC	TCGA-G3-A3CH-01	TIAL1	ENST00000412524.1,ENST00000369092.4,ENST00000489822.1,ENST00000436547.2,ENST00000470781.1,ENST00000497671.1,ENST00000369086.1	chr10	121341680:121341735:121341970:121342069:121347663:121347722,	121341971	121342069	121342010	121342010	Frame_Shift_Del	A	-	p.A81fs
LIHC	TCGA-G3-A3CH-01	TIAL1	ENST00000369093.2	chr10	121341680:121341735:121341970:121342120:121347663:121347722,	121341971	121342120	121342007	121342008	Frame_Shift_Del	TG	-	p.81_82del
LIHC	TCGA-G3-A3CH-01	TIAL1	ENST00000412524.1,ENST00000369092.4,ENST00000489822.1,ENST00000436547.2,ENST00000470781.1,ENST00000497671.1,ENST00000369086.1	chr10	121341680:121341735:121341970:121342069:121347663:121347722,	121341971	121342069	121342007	121342008	Frame_Shift_Del	TG	-	p.81_82del
LIHC	TCGA-G3-A25Z-01	INTS10	ENST00000397977.3	chr8	19681383:19681492:19682313:19682483:19683936:19683999,19681405:19681555:19682313:19682483:19683936:19683999,	19682314	19682483	19682357	19682358	Frame_Shift_Ins	-	A	p.Y294_M295delinsX
LIHC	TCGA-2Y-A9HA-01	CPSF2	ENST00000298875.4,ENST00000555244.1	chr14	92624002:92624228:92625326:92625626:92627455:92627590,	92625327	92625626	92625383	92625414	Frame_Shift_Del	TGAATTAGCTTGGATAGATGGTGTCTTAGATA	-	p.626_636del
LIHC	TCGA-2Y-A9HA-01	ENKUR	ENST00000483339.2	chr10	25279391:25279538:25284574:25284798:25304788:25304889,	25284575	25284798	25284594	25284594	Frame_Shift_Del	G	-	p.P143fs
LIHC	TCGA-2Y-A9H3-01	SCN7A	ENST00000424326.1,ENST00000409855.1	chr2	167262022:167263156:167266174:167266445:167266729:167266834,	167266175	167266445	167266354	167266355	Frame_Shift_Ins	-	T	p.M1268fs
LIHC	TCGA-2Y-A9H3-01	SCN7A	ENST00000424326.1,ENST00000409855.1	chr2	167262022:167263156:167266174:167266445:167266729:167266834,	167266175	167266445	167266356	167266357	Frame_Shift_Del	GG	-	p.1267_1268del
LIHC	TCGA-2Y-A9GW-01	TAT	ENST00000355962.4	chr16	71604171:71604300:71604581:71604734:71605508:71605561,	71604582	71604734	71604656	71604657	Frame_Shift_Ins	-	G	p.K280fs
LIHC	TCGA-2Y-A9GW-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65350076	65350076	Frame_Shift_Del	G	-	p.P644fs
LIHC	TCGA-2Y-A9GW-01	HRG	ENST00000232003.4	chr3	186383740:186384003:186386723:186386840:186387726:186387817,	186386724	186386840	186386775	186386776	Frame_Shift_Ins	-	C	p.S79fs
LIHC	TCGA-DD-AAEG-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186135315:186135435:186135939:186136074:186140468:186140582,	186135940	186136074	186136049	186136049	Frame_Shift_Del	A	-	p.R5183fs
LIHC	TCGA-DD-AADC-01	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71576746	71576746	Frame_Shift_Del	A	-	p.E221fs
LIHC	TCGA-DD-AADC-01	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71576746	71576746	Frame_Shift_Del	A	-	p.E221fs
LIHC	TCGA-DD-AADC-01	CAST	ENST00000359176.4,ENST00000514055.1,ENST00000506811.1,ENST00000508117.2,ENST00000338252.3,ENST00000505143.1,ENST00000510156.1,ENST00000508830.1,ENST00000341926.3,ENST00000395813.1,ENST00000421689.2	chr5	96058342:96058422:96062497:96062563:96063192:96063234,96058342:96058402:96062497:96062563:96063192:96063234,	96062498	96062563	96062545	96062546	Frame_Shift_Ins	-	A	p.K23fs
LIHC	TCGA-DD-AADC-01	CAST	ENST00000511049.1	chr5	96058342:96058402:96062457:96062563:96063192:96063234,	96062458	96062563	96062545	96062546	Frame_Shift_Ins	-	A	p.K23fs
LIHC	TCGA-2Y-A9H4-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579420	7579420	Frame_Shift_Del	G	-	p.S90fs
LIHC	TCGA-2Y-A9H4-01	HNRNPA1	ENST00000547870.1	chr12	54674563:54674606:54675169:54675725:54675873:54675922,	54675170	54675725	54675175	54675176	Frame_Shift_Ins	-	A	p.P7fs
LIHC	TCGA-2Y-A9H4-01	HNRNPA1	ENST00000551702.1	chr12	54674563:54674606:54675169:54675286:54675578:54675725,54674563:54674606:54675169:54675286:54675873:54675922,	54675170	54675286	54675175	54675176	Frame_Shift_Ins	-	A	p.P7fs
LIHC	TCGA-G3-A25Y-01	PLEKHM1	ENST00000586562.1,ENST00000589780.1,ENST00000581448.1,ENST00000586084.1	chr17	43553061:43553092:43559802:43559891:43568017:43568094,43555466:43555513:43559802:43559891:43568017:43568094,	43559803	43559891	43559816	43559835	Frame_Shift_Del	TGGGGGTCCAGTCCATTCTC	-	p.6_12del
LIHC	TCGA-G3-A25V-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602811.1,ENST00000581941.1,ENST00000602537.1	chr17	11924292:11924318:11998891:11999011:12013691:12013743,11958205:11958308:11998891:11999011:12011106:12011226,11984672:11984847:11998891:11999011:12011106:12011226,	11998892	11999011	11998923	11998923	Frame_Shift_Del	A	-	p.Q142fs
LIHC	TCGA-K7-AAU7-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000509063.1,ENST00000441319.1	chr4	74272367:74272478:74274310:74274522:74275071:74275204,	74274311	74274522	74274379	74274380	Frame_Shift_Ins	-	AGCA	p.D113fs
LIHC	TCGA-G3-AAV6-01	APOB	ENST00000233242.1	chr2	21238241:21238417:21239310:21239521:21241863:21241985,	21239311	21239521	21239420	21239421	Frame_Shift_Ins	-	TCCGAGGTCAACATCAAAA	p.T1075_I1076delinsFX
LIHC	TCGA-DD-AAD1-01	DSC2	ENST00000251081.6,ENST00000280904.6	chr18	28660061:28660318:28662203:28662389:28662891:28663026,	28662204	28662389	28662231	28662231	Frame_Shift_Del	G	-	p.N413fs
LIHC	TCGA-DD-AAD1-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357551	50357552	Frame_Shift_Del	GT	-	p.464_464del
LIHC	TCGA-G3-A3CJ-01	TFDP1	ENST00000375370.5,ENST00000465174.1	chr13	114239057:114239203:114240088:114240164:114265310:114265377,	114240089	114240164	114240158	114240158	Frame_Shift_Del	A	-	p.A2fs
LIHC	TCGA-G3-A3CJ-01	CDHR3	ENST00000478080.1,ENST00000317716.9,ENST00000542731.1	chr7	105656372:105656471:105658291:105658518:105660818:105660990,	105658292	105658518	105658335	105658335	Frame_Shift_Del	C	-	p.L490fs
LIHC	TCGA-G3-A3CJ-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32037329:32037638:32037903:32038191:32039766:32040075,	32037904	32038191	32038147	32038147	Frame_Shift_Del	C	-	p.E1679fs
LIHC	TCGA-G3-A3CJ-01	SETD6	ENST00000427443.1	chr16	58550516:58550576:58550711:58550832:58551954:58552135,58550516:58550576:58550711:58550832:58551923:58552135,	58550712	58550832	58550759	58550759	Frame_Shift_Del	C	-	p.S240fs
LIHC	TCGA-G3-A3CJ-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073041	46073041	Frame_Shift_Del	A	-	p.E153fs
LIHC	TCGA-G3-A3CJ-01	APBB1IP	ENST00000376236.4	chr10	26800675:26800835:26802467:26802589:26822367:26822454,	26802468	26802589	26802473	26802473	Frame_Shift_Del	T	-	p.R232fs
LIHC	TCGA-G3-A3CJ-01	FYN	ENST00000496864.2,ENST00000476769.2,ENST00000368667.2,ENST00000354650.3	chr6	112017502:112017659:112021306:112021471:112024087:112024189,	112021307	112021471	112021336	112021336	Frame_Shift_Del	C	-	p.G278fs
LIHC	TCGA-G3-A3CJ-01	TUBA3D	ENST00000321253.6	chr2	132236880:132237029:132237641:132238322:132240124:132240507,	132237642	132238322	132238225	132238225	Frame_Shift_Del	G	-	p.R320fs
LIHC	TCGA-G3-A3CJ-01	PDIA4	ENST00000286091.4,ENST00000466592.1	chr7	148701290:148701301:148702232:148702466:148702988:148703145,	148702233	148702466	148702444	148702444	Frame_Shift_Del	T	-	p.V438fs
LIHC	TCGA-G3-A3CJ-01	HACE1	ENST00000369127.4,ENST00000416605.2,ENST00000517424.1,ENST00000262903.4,ENST00000517995.1	chr6	105192386:105192485:105198215:105198347:105219067:105219264,	105198216	105198347	105198277	105198277	Frame_Shift_Del	A	-	p.L761fs
LIHC	TCGA-G3-A3CJ-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000580732.2,ENST00000400483.4	chr18	19098133:19098195:19100648:19100784:19102618:19102782,	19100649	19100784	19100709	19100709	Frame_Shift_Del	T	-	p.V1844fs
LIHC	TCGA-G3-A3CJ-01	EPS8L2	ENST00000530452.2	chr11	721284:721352:721564:721691:722400:722500,	721565	721691	721655	721655	Frame_Shift_Del	A	-	p.R286fs
LIHC	TCGA-G3-A3CJ-01	RPL23	ENST00000577407.1,ENST00000479035.2,ENST00000245857.5,ENST00000394332.1,ENST00000378096.3,ENST00000470646.1	chr17	37006691:37006728:37008856:37008985:37009274:37009358,	37008857	37008985	37008859	37008859	Frame_Shift_Del	T	-	p.K75fs
LIHC	TCGA-G3-A3CJ-01	SKP2	ENST00000546211.1,ENST00000513151.1,ENST00000509692.1	chr5	36168414:36168549:36170445:36170544:36171704:36171835,36166620:36166764:36170445:36170544:36171704:36171835,	36170446	36170544	36170455	36170455	Frame_Shift_Del	A	-	p.A227fs
LIHC	TCGA-G3-A3CJ-01	TMEM232	ENST00000515518.2,ENST00000429839.2,ENST00000455884.2,ENST00000511883.2	chr5	109963481:109963581:109973898:109974056:109976591:109976697,	109973899	109974056	109973983	109973983	Frame_Shift_Del	A	-	p.V140fs
LIHC	TCGA-G3-A3CJ-01	MBTPS1	ENST00000569770.1,ENST00000343411.3,ENST00000565863.1	chr16	84115356:84115513:84118587:84118739:84120962:84121065,	84118588	84118739	84118656	84118656	Frame_Shift_Del	C	-	p.C407fs
LIHC	TCGA-G3-A3CJ-01	CC2D1B	ENST00000460261.1	chr1	52822055:52822114:52822672:52822846:52823197:52823370,	52822673	52822846	52822693	52822693	Frame_Shift_Del	T	-	p.M626fs
LIHC	TCGA-G3-A3CJ-01	CC2D1B	ENST00000438831.1,ENST00000491136.2,ENST00000371586.2,ENST00000450942.2,ENST00000284376.3,ENST00000438021.1	chr1	52822055:52822114:52822672:52822798:52823197:52823370,	52822673	52822798	52822693	52822693	Frame_Shift_Del	T	-	p.M626fs
LIHC	TCGA-G3-A3CJ-01	RRP7A	ENST00000416699.1,ENST00000323013.6	chr22	42910687:42910785:42911156:42911274:42912016:42912142,	42911157	42911274	42911202	42911202	Frame_Shift_Del	G	-	p.L139fs
LIHC	TCGA-G3-A3CJ-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120968	46120968	Frame_Shift_Del	T	-	p.H29fs
LIHC	TCGA-G3-A3CJ-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904639	100904639	Frame_Shift_Del	C	-	p.F64fs
LIHC	TCGA-G3-A3CJ-01	LLGL2	ENST00000392550.3,ENST00000545227.2,ENST00000577200.1,ENST00000167462.5	chr17	73559854:73559887:73560433:73560588:73564556:73564774,	73560434	73560588	73560534	73560534	Frame_Shift_Del	T	-	p.D327fs
LIHC	TCGA-G3-A3CJ-01	FBP1	ENST00000415431.1,ENST00000375326.4	chr9	97367738:97367858:97369096:97369234:97372202:97372343,	97369097	97369234	97369188	97369188	Frame_Shift_Del	T	-	p.K205fs
LIHC	TCGA-G3-A3CJ-01	ZNF200	ENST00000575948.1,ENST00000414144.2	chr16	3282832:3282921:3283505:3283836:3285111:3285360,3282832:3282921:3283505:3283836:3284986:3285070,	3283506	3283836	3283724	3283724	Frame_Shift_Del	G	-	p.P11fs
LIHC	TCGA-G3-A3CJ-01	YAP1	ENST00000529029.1,ENST00000282441.5,ENST00000524575.1	chr11	102076623:102076805:102094352:102094483:102098199:102098312,102080247:102080295:102094352:102094483:102098199:102098312,	102094353	102094483	102094405	102094405	Frame_Shift_Del	A	-	p.Q362fs
LIHC	TCGA-G3-A3CJ-01	APOH	ENST00000585162.1	chr17	64210570:64210768:64212905:64213085:64216671:64216748,64208156:64208306:64212905:64213085:64216671:64216748,	64212906	64213085	64212962	64212962	Frame_Shift_Del	G	-	p.P243fs
LIHC	TCGA-G3-A3CJ-01	FAM120B	ENST00000540480.1,ENST00000476287.1,ENST00000537664.1	chr6	170632166:170632347:170639536:170639638:170657238:170657411,	170639537	170639638	170639584	170639584	Frame_Shift_Del	G	-	p.P654fs
LIHC	TCGA-G3-A3CJ-01	TMEM62	ENST00000564494.1	chr15	43452878:43452992:43461790:43461875:43470804:43470909,43452878:43452992:43461790:43461875:43473378:43473497,	43461791	43461875	43461843	43461843	Frame_Shift_Del	T	-	p.I450fs
LIHC	TCGA-G3-A3CJ-01	CERKL	ENST00000479558.1,ENST00000494398.1,ENST00000410087.3	chr2	182423378:182423435:182430784:182430848:182438479:182438611,	182430785	182430848	182430832	182430832	Frame_Shift_Del	C	-	p.H211fs
LIHC	TCGA-G3-A3CJ-01	ERN2	ENST00000562562.1,ENST00000457008.2,ENST00000256797.4	chr16	23716203:23716468:23717650:23717752:23718074:23718175,	23717651	23717752	23717673	23717673	Frame_Shift_Del	G	-	p.M238fs
LIHC	TCGA-G3-A3CJ-01	BMP2K	ENST00000502871.1,ENST00000389010.3,ENST00000335016.5	chr4	79766169:79766203:79768341:79768423:79772077:79772210,	79768342	79768423	79768365	79768365	Frame_Shift_Del	C	-	p.A231fs
LIHC	TCGA-G3-A3CJ-01	ENTPD6	ENST00000433259.2,ENST00000447877.1,ENST00000471478.1	chr20	25201867:25201969:25203473:25203614:25204736:25204793,25199185:25199250:25203473:25203614:25204736:25204793,	25203474	25203614	25203522	25203522	Frame_Shift_Del	A	-	p.Q365fs
LIHC	TCGA-G3-A3CJ-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1424976:1425092:1427294:1427481:1443116:1443229,	1427295	1427481	1427450	1427450	Frame_Shift_Del	C	-	p.S891fs
LIHC	TCGA-G3-A3CJ-01	ACP1	ENST00000484464.1,ENST00000453390.1,ENST00000442386.1,ENST00000272065.5,ENST00000463831.1,ENST00000272067.6	chr2	272036:272150:276979:277085:277226:277261,275139:275201:276979:277085:277226:277261,	276980	277085	277054	277054	Frame_Shift_Del	A	-	p.Q123fs
LIHC	TCGA-G3-A3CJ-01	MAN1B1	ENST00000371589.4,ENST00000371587.4,ENST00000474902.1,ENST00000535144.1,ENST00000544448.1	chr9	139992279:139992389:139994147:139994333:139995456:139995605,	139994148	139994333	139994268	139994268	Frame_Shift_Del	G	-	p.W284fs
LIHC	TCGA-G3-A3CJ-01	LUC7L3	ENST00000240304.1,ENST00000393227.2,ENST00000508218.1	chr17	48797162:48797192:48814320:48814387:48817666:48817706,	48814321	48814387	48814327	48814327	Frame_Shift_Del	A	-	p.C35X
LIHC	TCGA-G3-A3CJ-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327823	16327823	Frame_Shift_Del	G	-	p.P240fs
LIHC	TCGA-G3-A3CJ-01	EHBP1	ENST00000431489.1,ENST00000494958.1,ENST00000263991.5,ENST00000413434.1,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3,ENST00000426940.1,ENST00000472809.1,ENST00000405482.1	chr2	62974529:62974587:62991400:62991496:62998473:62998527,	62991401	62991496	62991489	62991489	Frame_Shift_Del	T	-	p.L84fs
LIHC	TCGA-G3-A3CJ-01	TPCN2	ENST00000442692.2	chr11	68838823:68838888:68839390:68839491:68845949:68846069,	68839391	68839491	68839465	68839465	Frame_Shift_Del	G	-	p.V345fs
LIHC	TCGA-G3-A3CJ-01	ELMO1	ENST00000448602.1,ENST00000310758.4,ENST00000442504.1,ENST00000420636.1,ENST00000433246.1	chr7	37136282:37136332:37172734:37172839:37250990:37251122,	37172735	37172839	37172765	37172765	Frame_Shift_Del	A	-	p.A388fs
LIHC	TCGA-G3-A3CJ-01	AKIP1	ENST00000299576.5,ENST00000396648.2,ENST00000309377.4,ENST00000534147.1,ENST00000530281.1	chr11	8936372:8936477:8938833:8938914:8940883:8940961,	8938834	8938914	8938845	8938845	Frame_Shift_Del	A	-	p.R140fs
LIHC	TCGA-G3-A3CJ-01	RIN1	ENST00000424433.2,ENST00000530745.1	chr11	66103080:66103153:66103232:66103347:66103448:66103479,66103080:66103153:66103232:66103347:66103787:66103877,	66103233	66103347	66103273	66103273	Frame_Shift_Del	G	-	p.S115fs
LIHC	TCGA-G3-A3CJ-01	ATXN2	ENST00000389153.4,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111924564:111924628:111926279:111926584:111947352:111947423,	111926280	111926584	111926535	111926535	Frame_Shift_Del	T	-	p.N822fs
LIHC	TCGA-G3-A3CJ-01	TIMM44	ENST00000600748.1,ENST00000270538.3,ENST00000595831.1	chr19	7999949:8000030:8002911:8003082:8005986:8006082,	8002912	8003082	8002975	8002975	Frame_Shift_Del	T	-	p.F84fs
LIHC	TCGA-G3-A3CJ-01	TSPAN19	ENST00000552392.1	chr12	85417103:85417178:85421676:85421801:85423496:85423569,85418429:85418550:85421676:85421801:85423496:85423569,	85421677	85421801	85421730	85421730	Frame_Shift_Del	A	-	p.C71fs
LIHC	TCGA-G3-A3CJ-01	HAMP	ENST00000598398.1,ENST00000222304.3	chr19	35773396:35773570:35775691:35775751:35775840:35776016,	35775692	35775751	35775716	35775716	Frame_Shift_Del	C	-	p.Q38fs
LIHC	TCGA-G3-A3CJ-01	ILF3	ENST00000590261.1,ENST00000318511.3,ENST00000449870.1,ENST00000588657.1	chr19	10794592:10794646:10798021:10798384:10799225:10799354,	10798022	10798384	10798146	10798146	Frame_Shift_Del	A	-	p.P732fs
LIHC	TCGA-G3-A3CJ-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694668	42694668	Frame_Shift_Del	C	-	p.A426fs
LIHC	TCGA-G3-A3CJ-01	OVOL2	ENST00000483661.1,ENST00000278780.6	chr20	18005242:18005596:18022177:18022367:18037300:18037521,	18022178	18022367	18022253	18022253	Frame_Shift_Del	T	-	p.R146fs
LIHC	TCGA-G3-A3CJ-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70646243	70646243	Frame_Shift_Del	C	-	p.F897fs
LIHC	TCGA-G3-A3CJ-01	TTC14	ENST00000465625.1	chr3	180325435:180325553:180326488:180326598:180327417:180327791,180325950:180326059:180326488:180326598:180327417:180327791,	180326489	180326598	180326508	180326508	Frame_Shift_Del	A	-	p.E437fs
LIHC	TCGA-G3-A3CJ-01	USP48	ENST00000421625.2,ENST00000400301.1,ENST00000308271.9	chr1	22055104:22055212:22056196:22056325:22062938:22063118,	22056197	22056325	22056297	22056297	Frame_Shift_Del	T	-	p.P401fs
LIHC	TCGA-G3-A3CJ-01	USP48	ENST00000529637.1	chr1	22055104:22055212:22056196:22056322:22062938:22063118,	22056197	22056322	22056297	22056297	Frame_Shift_Del	T	-	p.P401fs
LIHC	TCGA-G3-A3CJ-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40781904:40782022:40782189:40782293:40783643:40783728,	40782190	40782293	40782217	40782217	Frame_Shift_Del	T	-	p.S380fs
LIHC	TCGA-G3-A3CJ-01	ALPK3	ENST00000258888.5	chr15	85403267:85403303:85405865:85406146:85406782:85406871,	85405866	85406146	85406007	85406007	Frame_Shift_Del	C	-	p.S1626fs
LIHC	TCGA-G3-A3CJ-01	ARAF	ENST00000377045.4	chrX	47424650:47424749:47426037:47426179:47426282:47426310,	47426038	47426179	47426094	47426094	Frame_Shift_Del	C	-	p.A208fs
LIHC	TCGA-G3-A3CJ-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42032519:42032774:42033611:42033795:42042899:42043086,	42033612	42033795	42033647	42033647	Frame_Shift_Del	G	-	p.P208fs
LIHC	TCGA-G3-A3CJ-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2	chr2	55883439:55883506:55887291:55887328:55889090:55889161,	55887292	55887328	55887311	55887311	Frame_Shift_Del	T	-	p.N422fs
LIHC	TCGA-G3-A3CJ-01	TMEM50A	ENST00000374358.4,ENST00000498135.1,ENST00000491936.1	chr1	25678116:25678184:25683283:25683344:25687150:25687458,25679372:25679465:25683283:25683344:25687150:25687458,	25683284	25683344	25683316	25683316	Frame_Shift_Del	T	-	p.V133fs
LIHC	TCGA-G3-A3CJ-01	PAN3	ENST00000399613.1,ENST00000380958.3	chr13	28713169:28713224:28748408:28748530:28750629:28750696,	28748409	28748530	28748431	28748431	Frame_Shift_Del	T	-	p.A151fs
LIHC	TCGA-G3-A3CJ-01	UBAC2	ENST00000468067.1,ENST00000403766.3,ENST00000473091.1	chr13	99896085:99896205:99896768:99896878:99966350:99966474,	99896769	99896878	99896772	99896772	Frame_Shift_Del	T	-	p.S94fs
LIHC	TCGA-G3-A3CJ-01	XRRA1	ENST00000321448.8	chr11	74570211:74570328:74574025:74574066:74617283:74617397,74563078:74563127:74574025:74574066:74617283:74617397,	74574026	74574066	74574037	74574037	Frame_Shift_Del	A	-	p.S337X
LIHC	TCGA-G3-A3CJ-01	BRCA1	ENST00000352993.3,ENST00000478531.1,ENST00000493795.1,ENST00000309486.4,ENST00000493919.1,ENST00000351666.3,ENST00000484087.1,ENST00000491747.2,ENST00000468300.1,ENST00000461221.1,ENST00000591534.1,ENST00000357654.3,ENST00000471181.2	chr17	41215890:41215968:41219624:41219712:41222944:41223083,	41219625	41219712	41219686	41219686	Frame_Shift_Del	T	-	p.H1693fs
LIHC	TCGA-G3-A3CJ-01	TCF7L1	ENST00000282111.3	chr2	85529606:85529739:85531017:85531120:85531377:85531461,	85531018	85531120	85531091	85531091	Frame_Shift_Del	C	-	p.I244fs
LIHC	TCGA-G3-A3CJ-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551340	10551340	Frame_Shift_Del	A	-	p.S435fs
LIHC	TCGA-G3-A3CJ-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4	chr1	85124000:85124151:85127880:85128058:85128137:85128213,	85127881	85128058	85127951	85127951	Frame_Shift_Del	T	-	p.K286fs
LIHC	TCGA-G3-A3CJ-01	MYSM1	ENST00000493821.1,ENST00000401044.3,ENST00000472487.1	chr1	59134655:59134710:59137541:59137630:59139244:59139322,	59137542	59137630	59137586	59137586	Frame_Shift_Del	T	-	p.G540fs
LIHC	TCGA-G3-A3CJ-01	PAXIP1	ENST00000473219.1,ENST00000404141.1,ENST00000475066.1,ENST00000397192.1,ENST00000457196.1	chr7	154760758:154760836:154767405:154768041:154774928:154775042,	154767406	154768041	154768002	154768002	Frame_Shift_Del	T	-	p.I160fs
LIHC	TCGA-G3-A3CJ-01	FAM118B	ENST00000528985.1,ENST00000525728.1,ENST00000533050.1,ENST00000360194.4	chr11	126110686:126110939:126120400:126120628:126124199:126124272,	126120401	126120628	126120425	126120425	Frame_Shift_Del	T	-	p.T121fs
LIHC	TCGA-G3-A3CJ-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R201fs
LIHC	TCGA-G3-A3CJ-01	CCDC138	ENST00000412964.2,ENST00000409529.2	chr2	109463193:109463386:109473249:109473426:109489906:109490045,109463193:109463386:109473249:109473426:109492543:109493032,	109473250	109473426	109473308	109473308	Frame_Shift_Del	A	-	p.G525fs
LIHC	TCGA-G3-A3CJ-01	MAGED1	ENST00000375695.2	chrX	51637371:51637445:51637722:51637890:51638148:51638340,	51637723	51637890	51637805	51637806	Frame_Shift_Del	TG	-	p.43_43del
LIHC	TCGA-G3-A3CJ-01	INTS8	ENST00000520315.1,ENST00000523731.1,ENST00000523206.1,ENST00000447247.1,ENST00000520526.1	chr8	95871738:95871860:95877733:95877918:95878385:95878419,	95877734	95877918	95877744	95877744	Frame_Shift_Del	T	-	p.L696fs
LIHC	TCGA-G3-A3CJ-01	INTS8	ENST00000343161.4,ENST00000524333.1	chr8	95871738:95871860:95877733:95877928:95878385:95878419,	95877734	95877928	95877744	95877744	Frame_Shift_Del	T	-	p.L696fs
LIHC	TCGA-G3-A3CJ-01	BCL9L	ENST00000526143.1	chr11	118778191:118778311:118778978:118779364:118795946:118796317,	118778979	118779364	118779099	118779099	Frame_Shift_Del	G	-	p.Q98fs
LIHC	TCGA-G3-A3CJ-01	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720389	3720389	Frame_Shift_Del	T	-	p.N1311fs
LIHC	TCGA-G3-A3CJ-01	MYH15	ENST00000273353.3	chr3	108179146:108179214:108181957:108182090:108183484:108183661,	108181958	108182090	108182059	108182059	Frame_Shift_Del	T	-	p.K608fs
LIHC	TCGA-G3-A3CJ-01	PCF11	ENST00000298281.4	chr11	82879469:82881037:82882859:82882956:82888126:82888246,	82882860	82882956	82882908	82882908	Frame_Shift_Del	T	-	p.Q1236fs
LIHC	TCGA-G3-A3CJ-01	PANK2	ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3897573:3897697:3899317:3899443:3903890:3904349,	3899318	3899443	3899427	3899427	Frame_Shift_Del	T	-	p.L549fs
LIHC	TCGA-G3-A3CJ-01	SEC16B	ENST00000327037.4,ENST00000528461.1,ENST00000308284.6	chr1	177911034:177911175:177913695:177913801:177915554:177915666,	177913696	177913801	177913790	177913790	Frame_Shift_Del	A	-	p.L596fs
LIHC	TCGA-G3-A3CJ-01	CSTF3	ENST00000323959.4	chr11	33120579:33120696:33121153:33121263:33123722:33123885,	33121154	33121263	33121158	33121158	Frame_Shift_Del	T	-	p.K311fs
LIHC	TCGA-G3-A3CJ-01	SERHL2	ENST00000340239.4,ENST00000527167.1,ENST00000534080.1,ENST00000477564.1,ENST00000416156.2,ENST00000327678.5	chr22	42950026:42950048:42950943:42951093:42951237:42951351,	42950944	42951093	42951001	42951001	Frame_Shift_Del	G	-	p.W27fs
LIHC	TCGA-G3-A3CJ-01	PHF21A	ENST00000323180.6,ENST00000257821.4	chr11	45991365:45991452:45992666:45992918:46001310:46001517,45991365:45991455:45992666:45992918:46001310:46001517,	45992667	45992918	45992680	45992680	Frame_Shift_Del	T	-	p.N200fs
LIHC	TCGA-G3-A3CJ-01	LCA5	ENST00000392959.1,ENST00000467898.3,ENST00000369846.4	chr6	80203329:80203467:80222928:80223458:80228421:80228802,	80222929	80223458	80223315	80223315	Frame_Shift_Del	T	-	p.I112fs
LIHC	TCGA-G3-A3CJ-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5	chr1	150530420:150530625:150530948:150531125:150531437:150531641,	150530949	150531125	150531054	150531054	Frame_Shift_Del	C	-	p.Q829fs
LIHC	TCGA-G3-A3CJ-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000327035.6,ENST00000457866.2,ENST00000367799.2	chr6	135763719:135763852:135768145:135768298:135769427:135769552,	135768146	135768298	135768254	135768254	Frame_Shift_Del	T	-	p.G558fs
LIHC	TCGA-G3-A3CJ-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178777179:178777263:178780449:178780539:178790746:178790839,	178780450	178780539	178780494	178780494	Frame_Shift_Del	A	-	p.L114X
LIHC	TCGA-G3-A3CJ-01	IBTK	ENST00000503400.1,ENST00000369751.2	chr6	82943875:82943972:82949882:82950560:82957278:82957388,	82949883	82950560	82949918	82949918	Frame_Shift_Del	A	-	p.Y96fs
LIHC	TCGA-G3-A3CJ-01	YTHDC1	ENST00000355665.3,ENST00000579690.1,ENST00000344157.4	chr4	69195719:69195837:69195919:69196028:69197820:69197915,	69195920	69196028	69195927	69195927	Frame_Shift_Del	T	-	p.F409fs
LIHC	TCGA-G3-A3CJ-01	ADAM8	ENST00000559180.1,ENST00000415217.3,ENST00000463298.1	chr10	135087662:135087739:135088987:135089091:135090275:135090354,	135088988	135089091	135089017	135089017	Frame_Shift_Del	G	-	p.R41fs
LIHC	TCGA-G3-A3CJ-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543930	Frame_Shift_Del	G	-	p.S797fs
LIHC	TCGA-G3-A3CJ-01	CAB39	ENST00000478152.1,ENST00000258418.5,ENST00000410084.3,ENST00000409788.3	chr2	231655612:231655751:231657927:231658046:231663443:231663612,	231657928	231658046	231657931	231657931	Frame_Shift_Del	A	-	p.G94fs
LIHC	TCGA-G3-A3CJ-01	ENGASE	ENST00000311595.9,ENST00000579016.1	chr17	77073748:77073946:77075570:77075719:77076288:77076446,	77075571	77075719	77075666	77075666	Frame_Shift_Del	T	-	p.I171fs
LIHC	TCGA-G3-A3CJ-01	RPS27A	ENST00000468810.1	chr2	55460498:55460553:55461254:55461697:55461966:55462059,	55461255	55461697	55461316	55461316	Frame_Shift_Del	T	-	p.T55fs
LIHC	TCGA-G3-A3CJ-01	RPS27A	ENST00000478196.2,ENST00000404735.1,ENST00000449323.1,ENST00000402285.3,ENST00000272317.6	chr2	55460498:55460553:55461254:55461340:55461966:55462059,	55461255	55461340	55461316	55461316	Frame_Shift_Del	T	-	p.T55fs
LIHC	TCGA-G3-A3CJ-01	PHF3	ENST00000481385.2,ENST00000515594.1,ENST00000509876.1,ENST00000393387.1,ENST00000506783.1,ENST00000262043.3	chr6	64401626:64401933:64404470:64404654:64408112:64408135,	64404471	64404654	64404551	64404551	Frame_Shift_Del	G	-	p.M859fs
LIHC	TCGA-G3-A3CJ-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000469982.1,ENST00000377246.3	chr13	78187025:78187076:78188027:78188090:78191733:78191776,	78188028	78188090	78188077	78188077	Frame_Shift_Del	A	-	p.V479fs
LIHC	TCGA-G3-A3CJ-01	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3,ENST00000498117.1	chr6	28879472:28879495:28887788:28888019:28889668:28889753,	28887789	28888019	28887983	28887983	Frame_Shift_Del	C	-	p.E185fs
LIHC	TCGA-G3-A3CJ-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132347	49132347	Frame_Shift_Del	C	-	p.L427fs
LIHC	TCGA-G3-A3CJ-01	CCDC126	ENST00000409765.1	chr7	23637585:23637670:23650789:23651172:23682549:23682555,23637133:23637224:23650789:23651172:23682549:23682555,	23650790	23651172	23650955	23650955	Frame_Shift_Del	A	-	p.R7fs
LIHC	TCGA-G3-A3CJ-01	IFI27L1	ENST00000555341.1,ENST00000393115.3,ENST00000555523.1,ENST00000553664.1,ENST00000554166.1	chr14	94567084:94567117:94568159:94568321:94568822:94568882,	94568160	94568321	94568273	94568273	Frame_Shift_Del	G	-	p.N58fs
LIHC	TCGA-G3-A3CJ-01	IFI27L1	ENST00000554562.1,ENST00000556381.1	chr14	94567084:94567117:94568159:94568405:94568822:94568882,	94568160	94568405	94568273	94568273	Frame_Shift_Del	G	-	p.N58fs
LIHC	TCGA-G3-A3CJ-01	TEFM	ENST00000580840.1,ENST00000581216.1	chr17	29227430:29227580:29231083:29231547:29233185:29233253,	29231084	29231547	29231265	29231265	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-G3-A3CJ-01	AFF1	ENST00000395146.4,ENST00000544085.1	chr4	88052944:88053016:88053422:88053560:88055625:88055846,88052944:88053016:88053422:88053560:88055622:88055846,	88053423	88053560	88053466	88053466	Frame_Shift_Del	A	-	p.C1072X
LIHC	TCGA-G3-A3CJ-01	WNK1	ENST00000537687.1	chr12	988738:989197:989886:990165:990857:990955,987437:987527:989886:990165:990857:990955,	989887	990165	989892	989892	Frame_Shift_Del	C	-	p.F1206fs
LIHC	TCGA-G3-A3CJ-01	TOP2A	ENST00000423485.1	chr17	38551700:38551791:38552534:38552717:38554809:38554893,	38552535	38552717	38552661	38552661	Frame_Shift_Del	C	-	p.K1199fs
LIHC	TCGA-G3-A3CJ-01	EMC10	ENST00000599293.1,ENST00000334976.6,ENST00000601780.1,ENST00000376918.3,ENST00000598585.1	chr19	50983367:50983472:50983837:50984019:50984140:50984234,	50983838	50984019	50983927	50983927	Frame_Shift_Del	C	-	p.H164fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560705	32560705	Frame_Shift_Del	A	-	p.E277fs
LIHC	TCGA-G3-A3CJ-01	APEH	ENST00000447541.1,ENST00000296456.5,ENST00000482301.1,ENST00000447436.1,ENST00000446089.1,ENST00000442186.1,ENST00000438011.1	chr3	49714209:49714250:49714335:49714457:49715005:49715066,	49714336	49714457	49714427	49714427	Frame_Shift_Del	C	-	p.I323fs
LIHC	TCGA-G3-A3CJ-01	MAPT	ENST00000570299.1,ENST00000334239.8,ENST00000446361.3	chr17	43972039:43972052:44039686:44039836:44049224:44049311,43972039:43972052:44039686:44039836:44055740:44055791,	44039687	44039836	44039763	44039763	Frame_Shift_Del	G	-	p.L20fs
LIHC	TCGA-G3-A3CJ-01	SNTN	ENST00000343837.3	chr3	63640437:63640472:63645400:63645540:63661225:63664696,63640437:63640472:63645400:63645540:63649612:63649736,	63645401	63645540	63645488	63645488	Frame_Shift_Del	A	-	p.E78fs
LIHC	TCGA-G3-A3CJ-01	PARD3B	ENST00000358768.2,ENST00000351153.1,ENST00000406610.2	chr2	206265736:206265847:206305093:206305396:206364619:206364755,	206305094	206305396	206305272	206305272	Frame_Shift_Del	C	-	p.S911fs
LIHC	TCGA-G3-A3CJ-01	CCT7	ENST00000538797.1	chr2	73470173:73470257:73471671:73471843:73474889:73474917,	73471672	73471843	73471802	73471802	Frame_Shift_Del	A	-	p.L192fs
LIHC	TCGA-G3-A3CJ-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401592	78401592	Frame_Shift_Del	A	-	p.A445fs
LIHC	TCGA-G3-A3CJ-01	NAGS	ENST00000592915.1,ENST00000293404.3	chr17	42084690:42084862:42084958:42085141:42085815:42086428,	42084959	42085141	42084998	42084998	Frame_Shift_Del	G	-	p.L436fs
LIHC	TCGA-G3-A3CJ-01	NAGS	ENST00000589767.1	chr17	42084690:42084862:42084934:42085141:42085815:42086428,	42084935	42085141	42084998	42084998	Frame_Shift_Del	G	-	p.L436fs
LIHC	TCGA-G3-A3CJ-01	WDR93	ENST00000268130.7,ENST00000560294.1,ENST00000444934.2	chr15	90276320:90276450:90278720:90278784:90280803:90280960,	90278721	90278784	90278766	90278766	Frame_Shift_Del	C	-	p.V530fs
LIHC	TCGA-G3-A3CJ-01	OPA1	ENST00000419435.1	chr3	193311140:193311198:193332511:193332830:193333462:193333559,193321288:193321346:193332511:193332830:193333462:193333559,	193332512	193332830	193332740	193332740	Frame_Shift_Del	T	-	p.N87fs
LIHC	TCGA-G3-A3CJ-01	SLC12A7	ENST00000264930.5	chr5	1076808:1076927:1077947:1078122:1078815:1078873,	1077948	1078122	1078065	1078065	Frame_Shift_Del	G	-	p.W505fs
LIHC	TCGA-G3-A3CJ-01	SORBS2	ENST00000437304.2	chr4	186583388:186583396:186598150:186598792:186599576:186599632,	186598151	186598792	186598269	186598273	Frame_Shift_Del	TCCTG	-	p.124_125del
LIHC	TCGA-G3-A3CJ-01	VPS13D	ENST00000356315.4,ENST00000460333.1,ENST00000011700.6,ENST00000358136.3	chr1	12409220:12409431:12414030:12414278:12415955:12416147,	12414031	12414278	12414184	12414184	Frame_Shift_Del	T	-	p.D3195fs
LIHC	TCGA-G3-A3CJ-01	UGT2B28	ENST00000335568.5	chr4	70155382:70155470:70156309:70156529:70160247:70160768,	70156310	70156529	70156317	70156317	Frame_Shift_Del	A	-	p.P366fs
LIHC	TCGA-G3-A3CJ-01	FANCG	ENST00000378643.3,ENST00000448890.1	chr9	35077261:35077396:35078137:35078340:35078601:35078643,	35078138	35078340	35078176	35078176	Frame_Shift_Del	C	-	p.D158fs
LIHC	TCGA-G3-A3CJ-01	RSPH1	ENST00000291536.3,ENST00000398352.3	chr21	43902746:43902818:43905778:43905914:43906480:43906571,	43905779	43905914	43905780	43905780	Frame_Shift_Del	T	-	p.N167fs
LIHC	TCGA-G3-A3CJ-01	PUM1	ENST00000257075.5,ENST00000525843.1,ENST00000373742.2,ENST00000424085.2	chr1	31414844:31414970:31418192:31418330:31422973:31423108,31413997:31414119:31418192:31418330:31422973:31423108,31414844:31414970:31418192:31418330:31422979:31423108,	31418193	31418330	31418315	31418315	Frame_Shift_Del	C	-	p.E958fs
LIHC	TCGA-G3-A3CJ-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31602012:31602142:31602248:31602334:31602529:31602754,	31602249	31602334	31602310	31602310	Frame_Shift_Del	T	-	p.P1637fs
LIHC	TCGA-G3-A3CJ-01	SPAG17	ENST00000336338.5	chr1	118581914:118582067:118583352:118583464:118584425:118584665,	118583353	118583464	118583387	118583387	Frame_Shift_Del	C	-	p.Q1045fs
LIHC	TCGA-G3-A3CJ-01	LMBRD1	ENST00000472827.1	chr6	70490385:70490446:70500187:70500364:70506704:70506777,	70500188	70500364	70500277	70500277	Frame_Shift_Del	A	-	p.S53fs
LIHC	TCGA-G3-A3CJ-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923160	158923160	Frame_Shift_Del	C	-	p.A822fs
LIHC	TCGA-G3-A3CJ-01	TMEM39B	ENST00000476968.1,ENST00000472503.1,ENST00000427288.1,ENST00000336294.5,ENST00000498613.1,ENST00000468135.1,ENST00000487305.1,ENST00000466321.1	chr1	32541267:32541423:32542764:32542919:32557275:32557345,32542363:32542447:32542764:32542919:32557275:32557345,	32542765	32542919	32542775	32542775	Frame_Shift_Del	G	-	p.R149fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000462898.1	chr3	138456548:138456728:138461399:138461597:138474595:138474821,	138461400	138461597	138461437	138461437	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000289153.2,ENST00000477593.1	chr3	138456548:138456728:138461399:138461623:138474595:138474821,	138461400	138461623	138461437	138461437	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-G3-A3CJ-01	ENG	ENST00000344849.3,ENST00000373203.4	chr9	130588788:130588951:130591965:130592106:130605372:130605524,	130591966	130592106	130592021	130592021	Frame_Shift_Del	T	-	p.N102fs
LIHC	TCGA-G3-A3CJ-01	SGCA	ENST00000344627.6,ENST00000512526.1,ENST00000511303.1,ENST00000513942.1	chr17	48245307:48245380:48245734:48245933:48248000:48248027,	48245735	48245933	48245832	48245832	Frame_Shift_Del	G	-	p.L161fs
LIHC	TCGA-G3-A3CJ-01	SLC13A2	ENST00000545060.1,ENST00000541739.2	chr17	26800755:26800832:26817471:26817608:26817718:26817924,	26817472	26817608	26817514	26817514	Frame_Shift_Del	G	-	p.F140fs
LIHC	TCGA-G3-A3CJ-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42053936:42054048:42054326:42054560:42057083:42057260,	42054327	42054560	42054541	42054541	Frame_Shift_Del	A	-	p.R2575fs
LIHC	TCGA-G3-A3CJ-01	NPC1	ENST00000540608.1,ENST00000269228.5	chr18	21140194:21140444:21141323:21141491:21148786:21148962,	21141324	21141491	21141327	21141327	Frame_Shift_Del	A	-	p.S210X
LIHC	TCGA-G3-A3CJ-01	PTCD2	ENST00000503315.1,ENST00000486995.1,ENST00000460837.2,ENST00000308077.5,ENST00000510676.2,ENST00000380639.5,ENST00000503868.1,ENST00000543322.1,ENST00000536805.1	chr5	71638788:71638863:71648467:71648581:71654029:71654045,	71648468	71648581	71648518	71648518	Frame_Shift_Del	A	-	p.L293fs
LIHC	TCGA-G3-A3CJ-01	RIPK3	ENST00000554756.1,ENST00000216274.5	chr14	24807627:24807773:24808220:24808530:24808662:24808803,	24808221	24808530	24808407	24808407	Frame_Shift_Del	T	-	p.F96fs
LIHC	TCGA-G3-A3CJ-01	SLCO3A1	ENST00000424469.2	chr15	92694184:92694244:92705985:92706228:92715009:92715077,	92705986	92706228	92706012	92706012	Frame_Shift_Del	G	-	p.F593fs
LIHC	TCGA-G3-A3CJ-01	ACO1	ENST00000309951.6,ENST00000541043.1,ENST00000379923.1	chr9	32418125:32418195:32418325:32418509:32419035:32419175,	32418326	32418509	32418340	32418340	Frame_Shift_Del	T	-	p.A163fs
LIHC	TCGA-G3-A3CJ-01	EXOSC9	ENST00000503236.1,ENST00000512454.1,ENST00000243498.5	chr4	122735020:122735202:122737523:122737602:122737926:122737995,	122737524	122737602	122737569	122737569	Frame_Shift_Del	T	-	p.I418fs
LIHC	TCGA-G3-A3CJ-01	TBC1D12	ENST00000225235.4	chr10	96267023:96267104:96269847:96269936:96271339:96271411,	96269848	96269936	96269902	96269902	Frame_Shift_Del	C	-	p.S552fs
LIHC	TCGA-G3-A3CJ-01	REPS2	ENST00000303843.7,ENST00000481792.1	chrX	16965192:16965257:17024343:17024467:17040245:17040394,	17024344	17024467	17024379	17024379	Frame_Shift_Del	T	-	p.Y103fs
LIHC	TCGA-G3-A3CJ-01	PTCH2	ENST00000372192.3,ENST00000447098.2	chr1	45295580:45295702:45296519:45296715:45297377:45297469,	45296520	45296715	45296538	45296538	Frame_Shift_Del	G	-	p.N266fs
LIHC	TCGA-G3-A3CJ-01	UBE2O	ENST00000319380.7,ENST00000587127.1	chr17	74387836:74387894:74387990:74388194:74391805:74391942,	74387991	74388194	74388089	74388089	Frame_Shift_Del	G	-	p.H1018fs
LIHC	TCGA-G3-A3CJ-01	BTG3	ENST00000348354.6	chr21	18977177:18977315:18981289:18981470:18985016:18985162,	18981290	18981470	18981340	18981340	Frame_Shift_Del	T	-	p.Y42fs
LIHC	TCGA-G3-A3CJ-01	FRY	ENST00000380250.3	chr13	32721418:32721522:32721975:32722084:32723884:32723971,	32721976	32722084	32722055	32722055	Frame_Shift_Del	T	-	p.I454fs
LIHC	TCGA-G3-A3CJ-01	ANO1	ENST00000530676.1	chr11	70031695:70031801:70033843:70034203:70035174:70035358,	70033844	70034203	70033894	70033894	Frame_Shift_Del	C	-	p.I915fs
LIHC	TCGA-G3-A3CJ-01	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28624231:28624359:28626681:28626811:28631483:28631599,	28626682	28626811	28626770	28626770	Frame_Shift_Del	T	-	p.M176fs
LIHC	TCGA-G3-A3CJ-01	TMEM130	ENST00000339375.4	chr7	98457810:98457961:98460717:98461023:98467399:98467489,	98460718	98461023	98460876	98460876	Frame_Shift_Del	G	-	p.P78fs
LIHC	TCGA-G3-A3CJ-01	ARCN1	ENST00000264028.4	chr11	118443167:118443265:118451960:118452224:118453893:118454073,	118451961	118452224	118452086	118452086	Frame_Shift_Del	A	-	p.G43fs
LIHC	TCGA-G3-A3CJ-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7232097	7232097	Frame_Shift_Del	C	-	p.F1255fs
LIHC	TCGA-G3-A3CJ-01	CDC27	ENST00000066544.3,ENST00000527547.1,ENST00000533415.1,ENST00000571643.1,ENST00000446365.2,ENST00000531206.1	chr17	45206758:45206887:45209622:45209740:45214517:45214610,	45209623	45209740	45209674	45209674	Frame_Shift_Del	T	-	p.A667fs
LIHC	TCGA-G3-A3CJ-01	ERAP1	ENST00000508227.1	chr5	96136636:96136703:96139105:96139530:96143562:96143612,	96139106	96139530	96139154	96139154	Frame_Shift_Del	A	-	p.F159fs
LIHC	TCGA-G3-A3CJ-01	ERAP1	ENST00000443439.2	chr5	96136636:96136703:96139105:96139646:96143562:96143612,	96139106	96139646	96139154	96139154	Frame_Shift_Del	A	-	p.F159fs
LIHC	TCGA-G3-A3CJ-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541324	187541324	Frame_Shift_Del	T	-	p.K2139fs
LIHC	TCGA-G3-A3CJ-01	PRKACB	ENST00000394839.2,ENST00000394838.2,ENST00000370685.3,ENST00000370689.2,ENST00000370682.3	chr1	84668365:84668488:84679835:84680000:84700862:84704172,	84679836	84680000	84679946	84679946	Frame_Shift_Del	A	-	p.I339fs
LIHC	TCGA-G3-A3CJ-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56837435:56837574:56840911:56841135:56846308:56846461,	56840912	56841135	56841104	56841104	Frame_Shift_Del	A	-	p.E481fs
LIHC	TCGA-G3-A3CJ-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.H72fs
LIHC	TCGA-G3-A3CJ-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5266206:5266311:5268416:5268533:5271664:5271763,	5268417	5268533	5268420	5268420	Frame_Shift_Del	A	-	p.V557fs
LIHC	TCGA-G3-A3CJ-01	PLEKHO1	ENST00000479194.1,ENST00000466659.1,ENST00000369124.4	chr1	150129122:150129209:150129578:150129680:150131013:150131181,	150129579	150129680	150129661	150129661	Frame_Shift_Del	G	-	p.R169fs
LIHC	TCGA-G3-A3CJ-01	PLEKHO1	ENST00000441340.1	chr1	150129122:150129209:150129565:150129680:150131013:150131181,	150129566	150129680	150129661	150129661	Frame_Shift_Del	G	-	p.R169fs
LIHC	TCGA-G3-A3CJ-01	MTIF2	ENST00000394600.3,ENST00000263629.4,ENST00000418823.4,ENST00000403721.1	chr2	55471290:55471369:55473472:55473597:55476530:55476670,	55473473	55473597	55473549	55473549	Frame_Shift_Del	T	-	p.M344fs
LIHC	TCGA-G3-A3CJ-01	PKHD1	ENST00000371117.3	chr6	51497362:51497521:51503646:51503754:51512828:51512916,	51503647	51503754	51503672	51503672	Frame_Shift_Del	A	-	p.I3828fs
LIHC	TCGA-G3-A3CJ-01	SETD4	ENST00000481477.1	chr21	37416079:37416254:37417879:37418309:37420605:37420694,37416079:37416254:37417879:37418309:37425880:37425918,	37417880	37418309	37418076	37418076	Frame_Shift_Del	A	-	p.F177fs
LIHC	TCGA-G3-A3CJ-01	C2CD5	ENST00000333957.4,ENST00000542676.1,ENST00000446597.1,ENST00000542683.1	chr12	22666227:22666313:22670919:22671071:22676359:22676556,	22670920	22671071	22671015	22671015	Frame_Shift_Del	G	-	p.P286fs
LIHC	TCGA-G3-A3CJ-01	LSP1	ENST00000406638.2,ENST00000421485.1,ENST00000451814.1,ENST00000432093.1,ENST00000405957.2,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1892581:1892642:1902661:1902826:1904648:1904658,1901316:1901454:1902661:1902826:1904648:1904658,	1902662	1902826	1902755	1902755	Frame_Shift_Del	G	-	p.E223fs
LIHC	TCGA-G3-A3CJ-01	TULP4	ENST00000367097.3,ENST00000367094.2	chr6	158914604:158914749:158915784:158915878:158919700:158919844,	158915785	158915878	158915819	158915819	Frame_Shift_Del	G	-	p.W604fs
LIHC	TCGA-G3-A3CJ-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17884423:17884559:17888485:17888646:17889905:17890020,	17888486	17888646	17888597	17888597	Frame_Shift_Del	T	-	p.N632fs
LIHC	TCGA-G3-A3CJ-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564717	107564717	Frame_Shift_Del	T	-	p.T1728fs
LIHC	TCGA-G3-A3CJ-01	PLA2G4C	ENST00000599111.1,ENST00000599921.1,ENST00000596510.1,ENST00000413144.2,ENST00000354276.3	chr19	48556253:48556404:48558134:48558306:48565254:48565409,	48558135	48558306	48558214	48558214	Frame_Shift_Del	G	-	p.A461fs
LIHC	TCGA-G3-A3CJ-01	AMOTL2	ENST00000506326.1,ENST00000422605.2,ENST00000514516.1,ENST00000249883.5,ENST00000513145.1	chr3	134080353:134080649:134084658:134084751:134085124:134085269,	134084659	134084751	134084701	134084701	Frame_Shift_Del	G	-	p.Q413fs
LIHC	TCGA-G3-A3CJ-01	CYP2S1	ENST00000600561.1	chr19	41699151:41699346:41700448:41700614:41707135:41707204,41699151:41699346:41700448:41700614:41703683:41703833,	41700449	41700614	41700601	41700601	Frame_Shift_Del	T	-	p.T110fs
LIHC	TCGA-G3-A3CJ-01	ATAD2B	ENST00000238789.5,ENST00000474583.1	chr2	24033185:24033372:24042616:24042752:24046127:24046439,	24042617	24042752	24042637	24042637	Frame_Shift_Del	T	-	p.P750fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366955	37366955	Frame_Shift_Del	A	-	p.E1215fs
LIHC	TCGA-G3-A3CJ-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169107	33169107	Frame_Shift_Del	G	-	p.L28fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168108333	168108333	Frame_Shift_Del	A	-	p.R3477fs
LIHC	TCGA-G3-A3CJ-01	C2CD5	ENST00000542683.1	chr12	22646156:22646271:22666227:22666313:22670919:22671071,	22666228	22666313	22666279	22666279	Frame_Shift_Del	C	-	p.P330fs
LIHC	TCGA-G3-A3CJ-01	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101232506:101232659:101237400:101237567:101243383:101243512,	101237401	101237567	101237506	101237506	Frame_Shift_Del	A	-	p.A598fs
LIHC	TCGA-G3-A3CJ-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46250972:46251074:46252654:46252827:46254124:46254225,	46252655	46252827	46252672	46252672	Frame_Shift_Del	A	-	p.E34fs
LIHC	TCGA-G3-A3CJ-01	IFT52	ENST00000468420.1,ENST00000373039.4,ENST00000373030.3,ENST00000467024.1	chr20	42247579:42247666:42249496:42249565:42252530:42252685,	42249497	42249565	42249541	42249541	Frame_Shift_Del	C	-	p.N248fs
LIHC	TCGA-G3-A3CJ-01	C17orf75	ENST00000577809.1,ENST00000225805.4	chr17	30658614:30658997:30660435:30660539:30661487:30661562,	30660436	30660539	30660500	30660500	Frame_Shift_Del	A	-	p.L304fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163580	163580	Frame_Shift_Del	C	-	p.S775fs
LIHC	TCGA-G3-A3CJ-01	PGC	ENST00000373025.3	chr6	41707619:41707684:41708228:41708348:41710027:41710076,	41708229	41708348	41708310	41708310	Frame_Shift_Del	C	-	p.G229fs
LIHC	TCGA-G3-A3CJ-01	SMARCAD1	ENST00000457823.2,ENST00000394961.2,ENST00000359052.4,ENST00000354268.4	chr4	95158102:95158169:95162056:95162157:95170804:95170906,	95162057	95162157	95162076	95162076	Frame_Shift_Del	A	-	p.R208fs
LIHC	TCGA-G3-A3CJ-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120192499	120192499	Frame_Shift_Del	C	-	p.A495fs
LIHC	TCGA-G3-A3CJ-01	POLE2	ENST00000554396.1,ENST00000216367.5	chr14	50140840:50140934:50141067:50141145:50146442:50146518,	50141068	50141145	50141076	50141076	Frame_Shift_Del	T	-	p.F106fs
LIHC	TCGA-G3-A3CJ-01	MICAL3	ENST00000429452.1,ENST00000585038.1	chr22	18362111:18362168:18363970:18364069:18368643:18368817,	18363971	18364069	18364031	18364031	Frame_Shift_Del	T	-	p.V761X
LIHC	TCGA-G3-A3CJ-01	TMPRSS6	ENST00000406856.1,ENST00000381792.2,ENST00000346753.3,ENST00000406725.1,ENST00000442782.2	chr22	37480334:37480444:37480766:37480879:37482322:37482459,	37480767	37480879	37480793	37480793	Frame_Shift_Del	G	-	p.Q363fs
LIHC	TCGA-G3-A3CJ-01	CHRNA1	ENST00000348749.5,ENST00000409219.1,ENST00000409323.1	chr2	175618946:175619142:175622293:175622403:175624058:175624103,	175622294	175622403	175622346	175622346	Frame_Shift_Del	T	-	p.I123fs
LIHC	TCGA-G3-A3CJ-01	KLHDC1	ENST00000556392.1,ENST00000359332.2	chr14	50177006:50177099:50190591:50190670:50192403:50192487,	50190592	50190670	50190646	50190646	Frame_Shift_Del	T	-	p.C153fs
LIHC	TCGA-G3-A3CJ-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124165609:124165732:124174023:124174206:124175456:124175575,	124174024	124174206	124174076	124174076	Frame_Shift_Del	A	-	p.E1200fs
LIHC	TCGA-G3-A3CJ-01	C16orf71	ENST00000299320.5,ENST00000590191.1	chr16	4796927:4797026:4797343:4797635:4798725:4799396,	4797344	4797635	4797357	4797357	Frame_Shift_Del	A	-	p.G431fs
LIHC	TCGA-G3-A3CJ-01	COL16A1	ENST00000479100.1	chr1	32134402:32134456:32136156:32136247:32137215:32137260,	32136157	32136247	32136240	32136240	Frame_Shift_Del	G	-	p.P1053fs
LIHC	TCGA-G3-A3CJ-01	COL16A1	ENST00000271069.6,ENST00000373672.3	chr1	32134402:32134456:32136202:32136247:32137215:32137260,	32136203	32136247	32136240	32136240	Frame_Shift_Del	G	-	p.P1053fs
LIHC	TCGA-G3-A3CJ-01	METTL4	ENST00000319888.6	chr18	2544193:2544285:2544651:2544758:2547353:2547528,2538451:2539144:2544651:2544758:2547353:2547528,	2544652	2544758	2544668	2544668	Frame_Shift_Del	T	-	p.T389fs
LIHC	TCGA-G3-A3CJ-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122800956:122801129:122802009:122802165:122805519:122805612,	122802010	122802165	122802060	122802060	Frame_Shift_Del	T	-	p.M323fs
LIHC	TCGA-G3-A3CJ-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11994064:11994248:11997230:11997506:11998318:11998522,	11997231	11997506	11997384	11997384	Frame_Shift_Del	A	-	p.G900fs
LIHC	TCGA-G3-A3CJ-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000490904.2	chr6	161412875:161413115:161455290:161455481:161469647:161469835,	161455291	161455481	161455391	161455391	Frame_Shift_Del	C	-	p.S84fs
LIHC	TCGA-G3-A3CJ-01	AGBL2	ENST00000357610.3,ENST00000528244.1,ENST00000526331.1,ENST00000298861.4,ENST00000532595.1,ENST00000525123.1,ENST00000529712.1	chr11	47713717:47713808:47720997:47721105:47726094:47726280,	47720998	47721105	47721054	47721054	Frame_Shift_Del	T	-	p.K213fs
LIHC	TCGA-G3-A3CJ-01	USP31	ENST00000563525.1,ENST00000219689.7	chr16	23091316:23091492:23093758:23093878:23096180:23096310,	23093759	23093878	23093870	23093870	Frame_Shift_Del	G	-	p.D614fs
LIHC	TCGA-G3-A3CJ-01	MAPKBP1	ENST00000456763.2,ENST00000512970.1,ENST00000502292.1,ENST00000505061.1,ENST00000457542.2,ENST00000510535.1,ENST00000507762.1,ENST00000514566.1,ENST00000221214.6	chr15	42067532:42067587:42092020:42092112:42103080:42103143,	42092021	42092112	42092080	42092080	Frame_Shift_Del	C	-	p.D58fs
LIHC	TCGA-G3-A3CJ-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210558065	210558065	Frame_Shift_Del	C	-	p.L390fs
LIHC	TCGA-G3-A3CJ-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210558065	210558065	Frame_Shift_Del	C	-	p.L390fs
LIHC	TCGA-G3-A3CJ-01	ATF4	ENST00000396680.1,ENST00000404241.2	chr22	39916568:39916756:39917358:39917676:39917777:39917962,	39917359	39917676	39917489	39917489	Frame_Shift_Del	G	-	p.V13fs
LIHC	TCGA-G3-A3CJ-01	POC5	ENST00000510798.1,ENST00000428202.2,ENST00000503835.1,ENST00000515285.1,ENST00000380475.2,ENST00000446329.2	chr5	74990576:74990656:74998429:74998635:75001528:75001612,	74998430	74998635	74998581	74998581	Frame_Shift_Del	A	-	p.F121fs
LIHC	TCGA-G3-A3CJ-01	DNAJB12	ENST00000394903.2,ENST00000444643.2	chr10	74103123:74103269:74104707:74104885:74114522:74114907,	74104708	74104885	74104834	74104834	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-G3-A3CJ-01	ZNF362	ENST00000373428.5,ENST00000539719.1	chr1	33741948:33742195:33745724:33746058:33747187:33747412,	33745725	33746058	33745933	33745933	Frame_Shift_Del	C	-	p.G186fs
LIHC	TCGA-G3-A6UC-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174820558	174820558	Frame_Shift_Del	T	-	p.I228fs
LIHC	TCGA-2Y-A9H5-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148657312:148657467:148672759:148672903:148674851:148674995,	148672760	148672903	148672850	148672853	Frame_Shift_Del	TGGA	-	p.206_207del
LIHC	TCGA-2Y-A9H5-01	LARP1B	ENST00000264584.5,ENST00000508819.1	chr4	128996088:128996148:128998942:128999117:129012155:129012299,	128998943	128999117	128999019	128999019	Frame_Shift_Del	G	-	p.S40fs
LIHC	TCGA-2Y-A9H5-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981100	201981101	Frame_Shift_Ins	-	G	p.L60fs
LIHC	TCGA-PD-A5DF-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74289942	74289954	Frame_Shift_Del	CCAGATCCTGATG	-	p.119_123del
LIHC	TCGA-O8-A75V-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661327	230661327	Frame_Shift_Del	G	-	p.H1191fs
LIHC	TCGA-O8-A75V-01	FANCM	ENST00000267430.5,ENST00000555013.1,ENST00000554809.1,ENST00000542564.2,ENST00000556250.1	chr14	45650632:45650727:45650839:45650908:45652976:45653105,	45650840	45650908	45650881	45650882	Frame_Shift_Ins	-	A	p.V1453fs
LIHC	TCGA-DD-A39W-01	STEAP3	ENST00000393110.2,ENST00000425223.2,ENST00000393107.2,ENST00000393106.2,ENST00000354888.5,ENST00000393108.2	chr2	120005254:120005782:120012259:120012424:120020632:120020915,	120012260	120012424	120012401	120012401	Frame_Shift_Del	T	-	p.N397fs
LIHC	TCGA-DD-AACW-01	PTDSS1	ENST00000337004.4,ENST00000517309.1,ENST00000522072.1,ENST00000455950.2	chr8	97321784:97321850:97332473:97332573:97342440:97342509,	97332474	97332573	97332514	97332514	Frame_Shift_Del	G	-	p.F371fs
LIHC	TCGA-G3-A5SL-01	MPI	ENST00000563786.1	chr15	75182402:75182430:75182778:75182995:75183719:75183830,	75182779	75182995	75182913	75182914	Frame_Shift_Ins	-	G	p.M21fs
LIHC	TCGA-G3-A5SL-01	MPI	ENST00000569233.1	chr15	75182417:75182542:75182867:75182995:75183719:75183830,75182402:75182430:75182867:75182995:75183719:75183830,75182402:75182430:75182867:75182995:75183319:75183376,	75182868	75182995	75182913	75182914	Frame_Shift_Ins	-	G	p.M21fs
LIHC	TCGA-G3-A5SL-01	MPI	ENST00000564633.1	chr15	75182402:75182430:75182896:75182995:75183719:75183830,	75182897	75182995	75182913	75182914	Frame_Shift_Ins	-	G	p.M21fs
LIHC	TCGA-G3-A5SL-01	MPI	ENST00000562606.1	chr15	75182402:75182430:75182893:75182995:75183719:75183830,	75182894	75182995	75182913	75182914	Frame_Shift_Ins	-	G	p.M21fs
LIHC	TCGA-G3-A5SL-01	NELFE	ENST00000492539.1	chr6	31924732:31924787:31926084:31926231:31926668:31926731,	31926085	31926231	31926222	31926223	Frame_Shift_Ins	-	T	p.M1fs
LIHC	TCGA-G3-A5SL-01	NELFE	ENST00000492185.1,ENST00000481121.1,ENST00000491139.1,ENST00000441998.1,ENST00000444811.2	chr6	31924732:31924787:31926148:31926231:31926668:31926731,	31926149	31926231	31926222	31926223	Frame_Shift_Ins	-	T	p.M1fs
LIHC	TCGA-G3-A5SL-01	CIITA	ENST00000324288.8,ENST00000570546.1,ENST00000381835.5	chr16	11016023:11016107:11016263:11016347:11017084:11017182,	11016264	11016347	11016299	11016300	Frame_Shift_Ins	-	G	p.Q1090fs
LIHC	TCGA-DD-AAE4-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000459659.1,ENST00000484478.1	chr3	33863526:33863574:33866678:33866832:33867971:33868031,	33866679	33866832	33866810	33866811	Frame_Shift_Ins	-	T	p.V198fs
LIHC	TCGA-DD-AADY-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16024365:16024583:16029395:16029520:16040624:16040726,	16029396	16029520	16029456	16029457	Frame_Shift_Ins	-	T	p.T525fs
LIHC	TCGA-MI-A75I-01	APOBEC3B	ENST00000407298.3,ENST00000333467.3,ENST00000335760.5	chr22	39387411:39387631:39388038:39388154:39388435:39388551,	39388039	39388154	39388141	39388141	Frame_Shift_Del	G	-	p.R374fs
LIHC	TCGA-G3-AAV1-01	MUC5B	ENST00000529681.1,ENST00000447027.1,ENST00000526859.1	chr11	1278855:1278940:1279328:1279433:1279559:1279597,	1279329	1279433	1279360	1279376	Frame_Shift_Del	GCCTGTGTGCCCGCCAG	-	p.5494_5499del
LIHC	TCGA-G3-AAV1-01	BPHL	ENST00000434640.1,ENST00000424847.2,ENST00000380379.5,ENST00000380375.3	chr6	3137595:3137727:3140619:3140743:3152721:3152767,	3140620	3140743	3140642	3140660	Frame_Shift_Del	GCCCCGGGTCCAGTGCCCC	-	p.229_235del
LIHC	TCGA-G3-AAV1-01	BPHL	ENST00000490918.1	chr6	3137595:3137727:3138274:3140743:3152721:3152767,	3138275	3140743	3140642	3140660	Frame_Shift_Del	GCCCCGGGTCCAGTGCCCC	-	p.229_235del
LIHC	TCGA-G3-AAV1-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97822810	97822814	Frame_Shift_Del	CTCTT	-	p.1011_1012del
LIHC	TCGA-CC-5264-01	RAI14	ENST00000265109.3,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000503673.1,ENST00000428746.2,ENST00000397449.1	chr5	34823060:34824596:34826434:34826584:34829836:34829902,	34826435	34826584	34826481	34826482	Frame_Shift_Ins	-	C	p.N902fs
LIHC	TCGA-CC-5264-01	PITPNM3	ENST00000421306.3,ENST00000572795.1,ENST00000262483.8,ENST00000576664.1	chr17	6358719:6358963:6360913:6361042:6364692:6364876,	6360914	6361042	6360967	6360970	Frame_Shift_Del	AGGC	-	p.855_856del
LIHC	TCGA-CC-5264-01	UBXN7	ENST00000381887.3,ENST00000493566.1	chr3	196129822:196129890:196134116:196134264:196159197:196159268,	196134117	196134264	196134222	196134222	Frame_Shift_Del	T	-	p.N39fs
LIHC	TCGA-G3-A3CG-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75513956	75513957	Frame_Shift_Del	AG	-	p.801_802del
LIHC	TCGA-G3-A3CG-01	THBS3	ENST00000457183.2,ENST00000541576.1,ENST00000368378.3,ENST00000541990.1	chr1	155166831:155167004:155167253:155167450:155167670:155167719,	155167254	155167450	155167449	155167450	Frame_Shift_Ins	-	A	p.G768fs
LIHC	TCGA-G3-A3CG-01	NCOR1	ENST00000458113.2	chr17	15968798:15969008:15971207:15971435:15973478:15973612,15968798:15969005:15971207:15971435:15973478:15973612,	15971208	15971435	15971227	15971227	Frame_Shift_Del	A	-	p.H1591fs
LIHC	TCGA-G3-A3CG-01	ABLIM1	ENST00000369253.2	chr10	116227939:116227975:116232735:116232891:116233637:116233715,116227939:116227975:116232735:116232891:116247716:116247752,	116232736	116232891	116232776	116232804	Frame_Shift_Del	GAAGTGTAGAAAGGCTCATAGGTAATAAG	-	p.403_412del
LIHC	TCGA-DD-AACT-01	SYTL3	ENST00000297239.9	chr6	159134831:159134910:159139118:159139243:159146534:159146669,	159139119	159139243	159139125	159139125	Frame_Shift_Del	C	-	p.S201fs
LIHC	TCGA-DD-AACT-01	BTAF1	ENST00000265990.6	chr10	93695413:93695537:93699708:93699823:93702178:93702325,	93699709	93699823	93699802	93699802	Frame_Shift_Del	C	-	p.N77fs
LIHC	TCGA-DD-AACT-01	FFAR4	ENST00000371483.4	chr10	95335847:95335976:95338915:95338963:95346976:95349829,	95338916	95338963	95338925	95338931	Frame_Shift_Del	CACCTCC	-	p.235_237del
LIHC	TCGA-DD-AACT-01	ROBO1	ENST00000464233.1,ENST00000467549.1,ENST00000436010.2,ENST00000495273.1	chr3	78647960:78648077:78649262:78649459:78655882:78656191,	78649263	78649459	78649366	78649366	Frame_Shift_Del	C	-	p.G1613fs
LIHC	TCGA-DD-AACT-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214815369	214815370	Frame_Shift_Del	GA	-	p.1229_1230del
LIHC	TCGA-DD-AACT-01	NME6	ENST00000450160.1,ENST00000451657.1,ENST00000435684.1	chr3	48336165:48336293:48336564:48336725:48337608:48337648,48336229:48336293:48336564:48336725:48338216:48338319,	48336565	48336725	48336594	48336595	Frame_Shift_Del	GT	-	p.130_130del
LIHC	TCGA-DD-AACT-01	FMO3	ENST00000542847.1	chr1	171060040:171060105:171061793:171061931:171070220:171070347,	171061794	171061931	171061808	171061809	Frame_Shift_Ins	-	A	p.K3fs
LIHC	TCGA-FV-A495-01	RANBP10	ENST00000602887.1,ENST00000536251.1,ENST00000602506.1,ENST00000602677.1,ENST00000448631.2,ENST00000602525.1	chr16	67805936:67805989:67839330:67839442:67840204:67840421,	67839331	67839442	67839340	67839340	Frame_Shift_Del	C	-	p.G113fs
LIHC	TCGA-5R-AA1C-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16024365:16024583:16029395:16029520:16040624:16040726,	16029396	16029520	16029431	16029435	Frame_Shift_Del	TTTCT	-	p.532_534del
LIHC	TCGA-RC-A7SH-01	FAM20A	ENST00000592554.1,ENST00000590074.1,ENST00000226094.5,ENST00000592847.1	chr17	66538125:66538306:66538834:66538950:66539769:66539810,	66538835	66538950	66538937	66538937	Frame_Shift_Del	G	-	p.R276fs
LIHC	TCGA-DD-A1EI-01	SHROOM3	ENST00000296043.6	chr4	77675463:77676345:77677601:77678090:77680697:77680848,	77677602	77678090	77677614	77677618	Frame_Shift_Del	TTCTA	-	p.1574_1575del
LIHC	TCGA-DD-A4NA-01	THBS3	ENST00000541576.1	chr1	155170246:155170401:155170687:155170795:155170884:155170995,155170246:155170401:155170687:155170795:155171207:155171360,	155170688	155170795	155170766	155170766	Frame_Shift_Del	C	-	p.Q491fs
LIHC	TCGA-2Y-A9GY-01	NADK	ENST00000378625.1,ENST00000342348.5,ENST00000497186.1,ENST00000344463.4,ENST00000400922.2,ENST00000477235.1,ENST00000341426.5,ENST00000341991.3,ENST00000469045.1,ENST00000480499.1	chr1	1686110:1686137:1686812:1686915:1687696:1687766,	1686813	1686915	1686824	1686825	Frame_Shift_Ins	-	TTTC	p.Q371fs
LIHC	TCGA-2Y-A9GY-01	TTC27	ENST00000317907.4	chr2	33037570:33037682:33042523:33042624:33045882:33046118,	33042524	33042624	33042572	33042572	Frame_Shift_Del	A	-	p.Q786fs
LIHC	TCGA-2Y-A9GY-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000420434.3	chr2	231113599:231113683:231115695:231115776:231120166:231120247,231113599:231113683:231115695:231115776:231118030:231118132,	231115696	231115776	231115716	231115716	Frame_Shift_Del	G	-	p.S332fs
LIHC	TCGA-2Y-A9GY-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000420434.3	chr2	231113599:231113683:231115695:231115776:231120166:231120247,231113599:231113683:231115695:231115776:231118030:231118132,	231115696	231115776	231115713	231115714	Frame_Shift_Del	TC	-	p.331_332del
LIHC	TCGA-2Y-A9GY-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000420434.3	chr2	231113599:231113683:231115695:231115776:231120166:231120247,231113599:231113683:231115695:231115776:231118030:231118132,	231115696	231115776	231115713	231115716	Frame_Shift_Del	TCAG	-	p.331_332del
LIHC	TCGA-2Y-A9GY-01	NADK	ENST00000378625.1,ENST00000342348.5,ENST00000497186.1,ENST00000344463.4,ENST00000400922.2,ENST00000477235.1,ENST00000341426.5,ENST00000341991.3,ENST00000469045.1,ENST00000480499.1	chr1	1686110:1686137:1686812:1686915:1687696:1687766,	1686813	1686915	1686825	1686825	Frame_Shift_Del	G	-	p.Q371fs
LIHC	TCGA-DD-AACG-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749492	33749493	Frame_Shift_Ins	-	A	p.D186_R187delinsX
LIHC	TCGA-DD-AACG-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000478274.2,ENST00000407246.2,ENST00000430330.2,ENST00000435345.2	chr1	53480645:53480715:53504588:53504718:53513529:53513609,53493649:53493743:53504588:53504718:53513529:53513609,	53504589	53504718	53504627	53504637	Frame_Shift_Del	TGCCTTCAAGG	-	p.459_462del
LIHC	TCGA-DD-AACZ-01	BBS4	ENST00000569338.1	chr15	73016868:73016996:73020280:73020335:73021956:73022025,73016868:73016996:73020280:73020335:73023645:73023798,	73020281	73020335	73020331	73020332	Frame_Shift_Ins	-	A	p.L213fs
LIHC	TCGA-DD-AACZ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577149	7577150	Frame_Shift_Ins	-	C	p.N263fs
LIHC	TCGA-DD-AACZ-01	ETV6	ENST00000396373.4	chr12	11992073:11992238:12006360:12006495:12022357:12022903,	12006361	12006495	12006418	12006418	Frame_Shift_Del	T	-	p.L129fs
LIHC	TCGA-DD-AAW2-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219328028:219328089:219330732:219330899:219339352:219339608,	219330733	219330899	219330793	219330794	Frame_Shift_Ins	-	A	p.M802fs
LIHC	TCGA-DD-AAW2-01	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5540596	5540605	Frame_Shift_Del	GCGCGGTCGG	-	p.432_435del
LIHC	TCGA-DD-AAW2-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109617108:109617250:109644723:109644796:109661244:109661397,	109644724	109644796	109644729	109644729	Frame_Shift_Del	A	-	p.Q792fs
LIHC	TCGA-DD-AAW2-01	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169362487:169362643:169369788:169369930:169374274:169374433,	169369789	169369930	169369922	169369922	Frame_Shift_Del	C	-	p.C336fs
LIHC	TCGA-5C-A9VG-01	ATP8B4	ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1	chr15	50215575:50215691:50223315:50223504:50226213:50226379,	50223316	50223504	50223353	50223354	Frame_Shift_Ins	-	A	p.L535fs
LIHC	TCGA-5C-A9VG-01	NPLOC4	ENST00000331134.6,ENST00000374747.5,ENST00000574897.1,ENST00000539314.1	chr17	79539042:79539114:79555969:79556130:79563141:79563268,	79555970	79556130	79556001	79556011	Frame_Shift_Del	CTGCTAGACTC	-	p.414_417del
LIHC	TCGA-5C-A9VG-01	EPHB1	ENST00000493838.1,ENST00000398015.3	chr3	134885783:134885848:134898701:134898824:134911417:134911665,	134898702	134898824	134898792	134898793	Frame_Shift_Ins	-	T	p.S617fs
LIHC	TCGA-EP-A2KC-01	YME1L1	ENST00000326799.3	chr10	27434356:27434519:27436426:27436597:27437834:27437901,	27436427	27436597	27436456	27436456	Frame_Shift_Del	G	-	p.R104fs
LIHC	TCGA-DD-AAD5-01	LAMP1	ENST00000397181.3,ENST00000332556.4	chr13	113975718:113975785:113975871:113976042:113976596:113976909,	113975872	113976042	113975888	113975888	Frame_Shift_Del	T	-	p.A320fs
LIHC	TCGA-DD-AAD5-01	TTC28	ENST00000490475.1,ENST00000397906.2	chr22	28692201:28692316:28693567:28693840:28702483:28702631,	28693568	28693840	28693650	28693654	Frame_Shift_Del	CAGGG	-	p.239_241del
LIHC	TCGA-DD-AAD5-01	GCDH	ENST00000585420.1	chr19	13004296:13004467:13006805:13006935:13007053:13007235,	13006806	13006935	13006809	13006810	Frame_Shift_Ins	-	G	p.Q170fs
LIHC	TCGA-DD-AAD5-01	MAPK9	ENST00000539014.1,ENST00000347470.4,ENST00000455781.1,ENST00000523583.1,ENST00000343111.6,ENST00000452135.2,ENST00000393360.3,ENST00000425491.2	chr5	179691780:179691839:179696279:179696409:179706795:179707036,179691780:179691839:179696279:179696409:179707439:179707581,	179696280	179696409	179696379	179696380	Frame_Shift_Del	AT	-	p.51_52del
LIHC	TCGA-DD-AAD5-01	TTC28	ENST00000490475.1,ENST00000397906.2	chr22	28692201:28692316:28693567:28693840:28702483:28702631,	28693568	28693840	28693694	28693697	Frame_Shift_Del	CAAT	-	p.225_226del
LIHC	TCGA-DD-AAD5-01	HCFC2	ENST00000229330.4,ENST00000544223.2	chr12	104473222:104473431:104474523:104474608:104476277:104476384,	104474524	104474608	104474581	104474581	Frame_Shift_Del	T	-	p.L247fs
LIHC	TCGA-DD-AAD5-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51524083	51524087	Frame_Shift_Del	CTGTC	-	p.3613_3614del
LIHC	TCGA-DD-AAD5-01	TMEM62	ENST00000260403.2,ENST00000564494.1	chr15	43443987:43444143:43446869:43447029:43452878:43452992,	43446870	43447029	43446911	43446911	Frame_Shift_Del	T	-	p.V355fs
LIHC	TCGA-CC-A1HT-01	CAPN14	ENST00000444918.2,ENST00000403897.3,ENST00000398824.2	chr2	31399452:31399508:31399891:31400008:31400611:31400684,	31399892	31400008	31399956	31399957	Frame_Shift_Ins	-	GC	p.G636fs
LIHC	TCGA-CC-A1HT-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31605091	31605092	Frame_Shift_Ins	-	T	p.M471fs
LIHC	TCGA-G3-AAV3-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699119	30699119	Frame_Shift_Del	T	-	p.L325fs
LIHC	TCGA-BC-A69H-01	HGS	ENST00000575058.1,ENST00000329138.4	chr17	79660704:79660782:79660899:79660995:79661844:79661883,	79660900	79660995	79660939	79660939	Frame_Shift_Del	C	-	p.E293fs
LIHC	TCGA-BC-A69H-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579389	7579399	Frame_Shift_Del	GGGAAGGGACA	-	p.97_100del
LIHC	TCGA-NI-A8LF-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577112	7577113	Frame_Shift_Ins	-	ACAA	p.A276fs
LIHC	TCGA-ZP-A9CY-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102782	168102782	Frame_Shift_Del	A	-	p.E1627fs
LIHC	TCGA-DD-AACA-01	PHTF1	ENST00000369598.1,ENST00000412670.1,ENST00000369600.1,ENST00000474926.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000369596.2,ENST00000447664.2	chr1	114248695:114248784:114249215:114249344:114252875:114253097,	114249216	114249344	114249252	114249253	Frame_Shift_Ins	-	A	p.M454fs
LIHC	TCGA-DD-AACA-01	CD40	ENST00000372276.3,ENST00000489304.1,ENST00000477696.1,ENST00000372285.3,ENST00000466205.1	chr20	44756776:44756863:44756968:44756997:44757520:44757643,	44756969	44756997	44756975	44756975	Frame_Shift_Del	T	-	p.V218fs
LIHC	TCGA-CC-A8HS-01	HPGD	ENST00000511499.1,ENST00000541923.1,ENST00000510835.1,ENST00000422112.2,ENST00000508330.1,ENST00000296522.6,ENST00000510901.1	chr4	175413083:175413245:175414301:175414465:175416698:175416775,	175414302	175414465	175414376	175414376	Frame_Shift_Del	T	-	p.E197fs
LIHC	TCGA-BC-A10R-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000543761.1,ENST00000490210.2,ENST00000588921.1	chr18	77107906:77107925:77108131:77108196:77119353:77119462,	77108132	77108196	77108133	77108134	Frame_Shift_Ins	-	TG	p.A947fs
LIHC	TCGA-BC-A10R-01	LGALS14	ENST00000360675.3	chr19	40195141:40195183:40196344:40196649:40197236:40197313,	40196345	40196649	40196577	40196757	Frame_Shift_Del	CAAGTACTGGGGCTGTGCTGTCAGTAATGTGTGCCGCTTCTGGGAAGGACGTCCATTGCCCTTGATGATTGTGGTGCGTGTACATCCCACACACAGGGGTTTCCTGTTCTTTCGTCATTTCCCTTTCTCTTTCAACAAGTGTTGTTTCTCACTGGAGTGAATTTTTAAATTCTTTCACCCT	-	p.10_34del
LIHC	TCGA-DD-AACP-01	L2HGDH	ENST00000261699.4,ENST00000421284.3,ENST00000555423.1,ENST00000267436.4	chr14	50750588:50750751:50760832:50760964:50768734:50768886,	50760833	50760964	50760900	50760900	Frame_Shift_Del	T	-	p.Q158fs
LIHC	TCGA-DD-AACP-01	UGT2B4	ENST00000502655.1,ENST00000381096.3	chr4	70359410:70359559:70360858:70361128:70391404:70391732,	70360859	70361128	70361015	70361018	Frame_Shift_Del	ACAG	-	p.188_189del
LIHC	TCGA-DD-AACP-01	EFHC2	ENST00000343571.3,ENST00000420999.1	chrX	44023167:44023273:44035537:44035630:44037612:44037810,	44035538	44035630	44035625	44035625	Frame_Shift_Del	T	-	p.N652fs
LIHC	TCGA-EP-A12J-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128138089:128138196:128140956:128141022:128141815:128141886,	128140957	128141022	128140983	128140984	Frame_Shift_Ins	-	T	p.V315fs
LIHC	TCGA-EP-A12J-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315943	50315980	Frame_Shift_Del	CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG	-	p.198_207del
LIHC	TCGA-EP-A12J-01	BCAP29	ENST00000379119.2,ENST00000445771.2	chr7	107253777:107253877:107254098:107254177:107258772:107259060,	107254099	107254177	107254121	107254122	Frame_Shift_Ins	-	A	p.L238fs
LIHC	TCGA-EP-A12J-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128138089:128138196:128140956:128141022:128141815:128141886,	128140957	128141022	128140982	128140983	Frame_Shift_Del	TG	-	p.314_314del
LIHC	TCGA-ED-A66Y-01	ASAH1	ENST00000381733.4,ENST00000523593.1,ENST00000519545.1,ENST00000314146.10,ENST00000262097.6	chr8	17920693:17920739:17921965:17922040:17924728:17924807,	17921966	17922040	17921966	17921967	Frame_Shift_Ins	-	T	p.G169fs
LIHC	TCGA-FV-A23B-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324160	31324161	Frame_Shift_Ins	-	A	p.R135fs
LIHC	TCGA-FV-A23B-01	HLA-B	ENST00000434333.1,ENST00000412585.2	chr6	31323283:31323369:31323943:31324219:31324464:31324569,	31323944	31324219	31324160	31324161	Frame_Shift_Ins	-	A	p.R135fs
LIHC	TCGA-DD-AADU-01	C4A	ENST00000428956.2,ENST00000498271.1,ENST00000537134.1	chr6	31951614:31951711:31951849:31951955:31952052:31952175,	31951850	31951955	31951924	31951925	Frame_Shift_Ins	-	T	p.T294fs
LIHC	TCGA-DD-AADU-01	RHCG	ENST00000558360.1	chr15	90014987:90015086:90015941:90016094:90019985:90020059,90014675:90014953:90015941:90016094:90019985:90020059,	90015942	90016094	90016014	90016014	Frame_Shift_Del	G	-	p.M465fs
LIHC	TCGA-DD-AADU-01	RHCG	ENST00000560081.1	chr15	90014987:90015086:90015952:90016094:90019985:90020059,	90015953	90016094	90016014	90016014	Frame_Shift_Del	G	-	p.M465fs
LIHC	TCGA-DD-AAEE-01	NFIX	ENST00000587260.1,ENST00000397661.2,ENST00000587760.1	chr19	13186348:13186485:13192493:13192669:13201112:13201204,13189426:13189549:13192493:13192669:13201112:13201204,	13192494	13192669	13192654	13192654	Frame_Shift_Del	C	-	p.G421fs
LIHC	TCGA-UB-A7MA-01	ST6GALNAC3	ENST00000328299.3	chr1	76877692:76878102:77093136:77093244:77094304:77100286,	77093137	77093244	77093235	77093235	Frame_Shift_Del	C	-	p.T241fs
LIHC	TCGA-G3-AAV7-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577153	7577153	Frame_Shift_Del	C	-	p.G262fs
LIHC	TCGA-G3-AAV7-01	MANEA	ENST00000358812.4	chr6	96025418:96025514:96034277:96034859:96044612:96044722,	96034278	96034859	96034580	96034584	Frame_Shift_Del	TCTGA	-	p.88_90del
LIHC	TCGA-G3-AAV7-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	359972:360069:364542:364683:396147:396322,	364543	364683	364646	364647	Frame_Shift_Ins	-	A	p.V306fs
LIHC	TCGA-G3-AAV7-01	MANEA	ENST00000358812.4	chr6	96025418:96025514:96034277:96034859:96044612:96044722,	96034278	96034859	96034587	96034590	Frame_Shift_Del	TTAA	-	p.91_92del
LIHC	TCGA-G3-AAV7-01	MANEA	ENST00000358812.4	chr6	96025418:96025514:96034277:96034859:96044612:96044722,	96034278	96034859	96034580	96034596	Frame_Shift_Del	TCTGAACTTAACTTGGA	-	p.88_94del
LIHC	TCGA-DD-A4NF-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351321	134351322	Frame_Shift_Ins	-	G	p.R1269fs
LIHC	TCGA-YA-A8S7-01	NFATC2	ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000610033.1	chr20	50007945:50007988:50048603:50049293:50051724:50051851,50015179:50015267:50048603:50049293:50051724:50051851,	50048604	50049293	50048660	50048675	Frame_Shift_Del	GGTAATACTTCCTTTT	-	p.884_889del
LIHC	TCGA-YA-A8S7-01	IP6K1	ENST00000468463.1	chr3	49775704:49775855:49785250:49785601:49823786:49823960,	49785251	49785601	49785257	49785257	Frame_Shift_Del	A	-	p.Y73fs
LIHC	TCGA-DD-A11A-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29911899	29911900	Frame_Shift_Ins	-	C	p.D207fs
LIHC	TCGA-DD-A3A0-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789283	150789283	Frame_Shift_Del	G	-	p.R595fs
LIHC	TCGA-DD-A3A0-01	PPP3CB	ENST00000545874.1,ENST00000495897.1,ENST00000394829.2,ENST00000394828.2,ENST00000342558.3,ENST00000394822.2,ENST00000360663.5	chr10	75227310:75227436:75230444:75230539:75230644:75230722,	75230445	75230539	75230481	75230481	Frame_Shift_Del	A	-	p.S316fs
LIHC	TCGA-DD-A3A0-01	SF3A3	ENST00000460925.1,ENST00000448721.2,ENST00000373019.4	chr1	38435242:38435407:38442555:38442625:38444391:38444499,	38442556	38442625	38442595	38442595	Frame_Shift_Del	A	-	p.L323X
LIHC	TCGA-DD-A3A0-01	SUPT7L	ENST00000405491.1	chr2	27880301:27880536:27883850:27884468:27885045:27885148,	27883851	27884468	27883855	27883855	Frame_Shift_Del	A	-	p.Y139fs
LIHC	TCGA-DD-A3A0-01	SUPT7L	ENST00000337768.5	chr2	27880301:27880536:27883850:27884255:27885045:27885148,	27883851	27884255	27883855	27883855	Frame_Shift_Del	A	-	p.Y139fs
LIHC	TCGA-DD-A3A0-01	UGDH	ENST00000515021.1,ENST00000316423.6,ENST00000509391.1,ENST00000506179.1,ENST00000514106.1	chr4	39512434:39512481:39515702:39515804:39522970:39523095,	39515703	39515804	39515764	39515764	Frame_Shift_Del	T	-	p.N68fs
LIHC	TCGA-DD-A3A0-01	UGDH	ENST00000503779.1,ENST00000510881.1	chr4	39512434:39512481:39515702:39515800:39522970:39523095,	39515703	39515800	39515764	39515764	Frame_Shift_Del	T	-	p.N68fs
LIHC	TCGA-DD-A3A0-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65351025	65351025	Frame_Shift_Del	T	-	p.V961fs
LIHC	TCGA-DD-A3A0-01	SMYD5	ENST00000389501.4	chr2	73451074:73451131:73451993:73452088:73452758:73452829,	73451994	73452088	73452036	73452036	Frame_Shift_Del	A	-	p.E328fs
LIHC	TCGA-DD-A3A0-01	MAPK11	ENST00000395764.1,ENST00000330651.6,ENST00000417877.1	chr22	50703749:50703923:50704010:50704089:50704654:50704734,	50704011	50704089	50704089	50704089	Frame_Shift_Del	C	-	p.A255fs
LIHC	TCGA-DD-A3A0-01	SLC25A13	ENST00000416240.2,ENST00000265631.5	chr7	95838149:95838289:95906507:95906650:95926209:95926263,95864113:95864229:95906507:95906650:95926209:95926263,	95906508	95906650	95906607	95906607	Frame_Shift_Del	T	-	p.N38fs
LIHC	TCGA-DD-A3A0-01	FZD6	ENST00000522566.1,ENST00000523739.1,ENST00000358755.4,ENST00000522484.1	chr8	104312427:104312512:104330817:104331014:104337262:104337726,104312427:104312512:104330817:104331014:104336708:104337726,	104330818	104331014	104330820	104330820	Frame_Shift_Del	T	-	p.H60fs
LIHC	TCGA-DD-A3A0-01	SCG5	ENST00000494364.1,ENST00000413748.2,ENST00000497208.1	chr15	32933902:32933979:32935786:32936019:32971966:32972116,	32935787	32936019	32936003	32936003	Frame_Shift_Del	C	-	p.G70fs
LIHC	TCGA-DD-A3A0-01	CAMSAP3	ENST00000446248.2	chr19	7671662:7671695:7672706:7672754:7673011:7673150,	7672707	7672754	7672746	7672746	Frame_Shift_Del	C	-	p.K231fs
LIHC	TCGA-DD-A3A0-01	GMPPA	ENST00000358215.3,ENST00000443704.1,ENST00000435316.1,ENST00000313597.5,ENST00000373908.1,ENST00000373917.3,ENST00000341142.3	chr2	220368804:220368935:220369949:220370084:220370179:220370253,	220369950	220370084	220369963	220369963	Frame_Shift_Del	G	-	p.P211fs
LIHC	TCGA-DD-A3A0-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
LIHC	TCGA-DD-A3A0-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
LIHC	TCGA-DD-A3A0-01	HDDC2	ENST00000318787.9,ENST00000608461.1,ENST00000609477.1	chr6	125613986:125614055:125621683:125621805:125622994:125623083,	125621684	125621805	125621689	125621689	Frame_Shift_Del	T	-	p.D68fs
LIHC	TCGA-DD-A3A0-01	RAB6A	ENST00000541588.1	chr11	73390730:73390765:73431890:73431944:73441809:73441868,	73431891	73431944	73431914	73431914	Frame_Shift_Del	T	-	p.T54fs
LIHC	TCGA-DD-A3A0-01	FGD6	ENST00000551521.1,ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95500729:95500813:95501338:95501407:95502123:95502195,	95501339	95501407	95501402	95501402	Frame_Shift_Del	A	-	p.L1091fs
LIHC	TCGA-DD-A3A0-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000584118.1,ENST00000584207.1,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73089683:73089930:73094132:73094276:73096101:73096277,	73094133	73094276	73094135	73094135	Frame_Shift_Del	C	-	p.G67fs
LIHC	TCGA-DD-A3A0-01	RGL3	ENST00000563726.1	chr19	11517499:11517540:11526612:11526824:11527287:11527336,11521928:11522120:11526612:11526824:11527287:11527336,	11526613	11526824	11526663	11526663	Frame_Shift_Del	A	-	p.L196fs
LIHC	TCGA-DD-A3A0-01	RGL3	ENST00000562663.1	chr19	11517499:11517540:11526622:11526824:11527287:11527336,	11526623	11526824	11526663	11526663	Frame_Shift_Del	A	-	p.L196fs
LIHC	TCGA-DD-A3A0-01	HEATR3	ENST00000299192.7,ENST00000285767.4	chr16	50104088:50104201:50106515:50106625:50109481:50109622,	50106516	50106625	50106592	50106592	Frame_Shift_Del	T	-	p.R196fs
LIHC	TCGA-DD-A3A0-01	IAH1	ENST00000545602.1,ENST00000481367.1	chr2	9624560:9624679:9628275:9628521:9634830:9634989,	9628276	9628521	9628363	9628363	Frame_Shift_Del	A	-	p.E217fs
LIHC	TCGA-DD-A3A0-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203397307:203397455:203407033:203407170:203417438:203417611,	203407034	203407170	203407121	203407121	Frame_Shift_Del	G	-	p.R455fs
LIHC	TCGA-DD-A3A0-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927229	41927229	Frame_Shift_Del	T	-	p.Y101fs
LIHC	TCGA-DD-A3A0-01	TMEM59	ENST00000371348.1,ENST00000371344.1,ENST00000371341.1,ENST00000234831.5,ENST00000452421.1,ENST00000440019.1,ENST00000420738.1	chr1	54502282:54502391:54506428:54506510:54507396:54507478,	54506429	54506510	54506473	54506473	Frame_Shift_Del	A	-	p.L222fs
LIHC	TCGA-DD-A3A0-01	GRAMD1C	ENST00000452134.2,ENST00000358160.4,ENST00000479212.1	chr3	113594330:113594434:113595011:113595107:113601598:113601679,	113595012	113595107	113595052	113595052	Frame_Shift_Del	A	-	p.E135fs
LIHC	TCGA-DD-A3A0-01	NEK8	ENST00000268766.6,ENST00000543014.1,ENST00000592510.1	chr17	27064692:27064754:27064836:27065018:27065112:27065263,	27064837	27065018	27064915	27064915	Frame_Shift_Del	C	-	p.T323fs
LIHC	TCGA-DD-A3A0-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81934216:81934385:81939007:81939112:81941289:81941379,	81939008	81939112	81939079	81939079	Frame_Shift_Del	G	-	p.Q478fs
LIHC	TCGA-DD-A3A0-01	PUM1	ENST00000524516.1,ENST00000257075.5,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3	chr1	31501642:31501711:31532050:31532424:31538462:31538523,	31532051	31532424	31532353	31532353	Frame_Shift_Del	G	-	p.H21fs
LIHC	TCGA-DD-A3A0-01	PUM1	ENST00000526215.1,ENST00000525948.1	chr1	31501642:31501711:31532145:31532424:31538462:31538523,	31532146	31532424	31532353	31532353	Frame_Shift_Del	G	-	p.H21fs
LIHC	TCGA-DD-A3A0-01	ZNF562	ENST00000541032.1,ENST00000453372.2,ENST00000453792.2,ENST00000588653.1,ENST00000448622.1	chr19	9763496:9764554:9767222:9767329:9770054:9770143,9763496:9764554:9767222:9767329:9768684:9768811,9764433:9764557:9767222:9767329:9771395:9771497,9764433:9764557:9767222:9767329:9768684:9768811,	9767223	9767329	9767254	9767254	Frame_Shift_Del	A	-	p.L106fs
LIHC	TCGA-DD-A3A0-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087164	89087164	Frame_Shift_Del	A	-	p.L1770fs
LIHC	TCGA-DD-A3A0-01	HDLBP	ENST00000391975.1,ENST00000391976.2,ENST00000310931.4	chr2	242194556:242194573:242194788:242194995:242195598:242195814,	242194789	242194995	242194991	242194991	Frame_Shift_Del	T	-	p.K293fs
LIHC	TCGA-DD-A3A0-01	PTK7	ENST00000481946.1	chr6	43099753:43099902:43100158:43100503:43106586:43106720,	43100159	43100503	43100230	43100230	Frame_Shift_Del	C	-	p.L352fs
LIHC	TCGA-DD-A3A0-01	PTK7	ENST00000230418.4,ENST00000352931.2,ENST00000481273.1,ENST00000487673.1,ENST00000230419.4,ENST00000345201.2,ENST00000470019.1	chr6	43099753:43099902:43100158:43100425:43106586:43106720,	43100159	43100425	43100230	43100230	Frame_Shift_Del	C	-	p.L352fs
LIHC	TCGA-DD-A3A0-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876439	27876439	Frame_Shift_Del	C	-	p.E730fs
LIHC	TCGA-DD-A3A0-01	LCN15	ENST00000316144.5,ENST00000482511.1	chr9	139656238:139656305:139656639:139656741:139657808:139657919,	139656640	139656741	139656669	139656669	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-DD-A3A0-01	MDK	ENST00000489525.1	chr11	46403843:46404011:46404136:46404743:46405018:46405120,	46404137	46404743	46404272	46404272	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-DD-A3A0-01	MDK	ENST00000395569.4	chr11	46403843:46404011:46404136:46404298:46405018:46405120,46403606:46403683:46404136:46404298:46405018:46405120,	46404137	46404298	46404272	46404272	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-DD-A3A0-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176136	63176136	Frame_Shift_Del	A	-	p.I753fs
LIHC	TCGA-DD-A3A0-01	ATP13A2	ENST00000326735.8,ENST00000452699.1	chr1	17312475:17312853:17312957:17313127:17313299:17313370,	17312958	17313127	17312998	17312998	Frame_Shift_Del	C	-	p.G1122fs
LIHC	TCGA-DD-A3A0-01	TTC1	ENST00000522073.1,ENST00000520274.1,ENST00000518560.1,ENST00000522793.1,ENST00000231238.5	chr5	159470139:159470176:159476520:159476669:159478135:159478190,	159476521	159476669	159476629	159476629	Frame_Shift_Del	A	-	p.E217fs
LIHC	TCGA-DD-A3A0-01	DNAH7	ENST00000312428.6	chr2	196791149:196791290:196799314:196799513:196801322:196801516,	196799315	196799513	196799425	196799426	Frame_Shift_Del	CG	-	p.1121_1121del
LIHC	TCGA-DD-A3A0-01	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000438259.2,ENST00000443646.1,ENST00000325123.4,ENST00000439910.1	chr3	42573733:42573825:42576466:42576596:42576834:42576876,	42576467	42576596	42576497	42576497	Frame_Shift_Del	C	-	p.I347fs
LIHC	TCGA-DD-A3A0-01	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5540757	5540757	Frame_Shift_Del	G	-	p.C382fs
LIHC	TCGA-DD-A3A0-01	SMPD4	ENST00000453750.1,ENST00000491319.2,ENST00000439886.1,ENST00000351288.6,ENST00000412570.1,ENST00000452225.2,ENST00000339679.7,ENST00000491128.1,ENST00000454468.1,ENST00000443958.2,ENST00000431183.2,ENST00000482171.1,ENST00000426662.2,ENST00000409031.1,ENST00000433118.1	chr2	130910682:130910744:130910891:130911023:130911274:130911508,	130910892	130911023	130910956	130910956	Frame_Shift_Del	T	-	p.K693fs
LIHC	TCGA-DD-A3A0-01	SPATA7	ENST00000356583.5,ENST00000555401.1,ENST00000045347.7,ENST00000553626.1,ENST00000393545.4,ENST00000556553.1	chr14	88862499:88862547:88883054:88883188:88892575:88892790,	88883055	88883188	88883150	88883150	Frame_Shift_Del	A	-	p.Y111X
LIHC	TCGA-DD-A3A0-01	LGALS4	ENST00000596628.1,ENST00000307751.4	chr19	39294381:39294420:39294508:39294535:39297100:39297147,	39294509	39294535	39294528	39294528	Frame_Shift_Del	G	-	p.P161fs
LIHC	TCGA-DD-A3A0-01	LGALS4	ENST00000597153.1	chr19	39292982:39293044:39294161:39294535:39297100:39297147,	39294162	39294535	39294528	39294528	Frame_Shift_Del	G	-	p.P161fs
LIHC	TCGA-DD-A3A0-01	NUB1	ENST00000483358.1,ENST00000468404.1,ENST00000413040.2,ENST00000355851.4,ENST00000493588.1,ENST00000477666.1,ENST00000566856.1,ENST00000480907.1,ENST00000568733.1,ENST00000470316.1	chr7	151049897:151049968:151052853:151053036:151053213:151053308,	151052854	151053036	151052912	151052912	Frame_Shift_Del	A	-	p.L182fs
LIHC	TCGA-DD-A3A0-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584008.1	chr17	65338301:65338379:65340721:65340896:65341860:65341973,	65340722	65340896	65340878	65340878	Frame_Shift_Del	A	-	p.T310fs
LIHC	TCGA-DD-A3A0-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329681	33329681	Frame_Shift_Del	T	-	p.K1460fs
LIHC	TCGA-DD-A3A0-01	AHSA1	ENST00000535854.2,ENST00000216479.3,ENST00000556866.1,ENST00000553374.1,ENST00000555133.1	chr14	77928502:77928585:77928984:77929102:77930940:77931029,	77928985	77929102	77929054	77929054	Frame_Shift_Del	A	-	p.V141fs
LIHC	TCGA-DD-A3A0-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1	chr3	145804573:145804695:145806372:145806498:145809586:145809688,	145806373	145806498	145806385	145806385	Frame_Shift_Del	A	-	p.I332fs
LIHC	TCGA-DD-A3A0-01	PAFAH1B1	ENST00000570400.1	chr17	2541591:2541614:2569309:2569384:2570285:2570492,	2569310	2569384	2569341	2569341	Frame_Shift_Del	T	-	p.L50fs
LIHC	TCGA-DD-A3A0-01	TLE3	ENST00000558201.1,ENST00000558379.1,ENST00000558939.1,ENST00000557919.1,ENST00000560525.1,ENST00000560589.1,ENST00000557907.1,ENST00000451782.2,ENST00000561453.1,ENST00000557997.1,ENST00000440567.3,ENST00000317509.8	chr15	70356792:70356809:70358352:70358557:70366871:70366934,	70358353	70358557	70358457	70358457	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A3A0-01	TLE3	ENST00000559048.1,ENST00000560939.1	chr15	70356792:70356809:70358352:70358554:70366871:70366934,	70358353	70358554	70358457	70358457	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A3A0-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000413276.2,ENST00000473521.1,ENST00000412139.2,ENST00000579850.1,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000584619.1,ENST00000582887.1,ENST00000425406.1	chr7	86811562:86811653:86813712:86813941:86815144:86815491,	86813713	86813941	86813845	86813845	Frame_Shift_Del	A	-	p.E318fs
LIHC	TCGA-DD-A3A0-01	PM20D2	ENST00000275072.4	chr6	89862761:89862904:89864466:89864621:89868043:89868179,	89864467	89864621	89864571	89864571	Frame_Shift_Del	A	-	p.T287fs
LIHC	TCGA-DD-A3A0-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4	chr5	134106592:134106689:134109385:134109551:134113263:134113415,	134109386	134109551	134109494	134109494	Frame_Shift_Del	A	-	p.L185fs
LIHC	TCGA-DD-A3A0-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326115	89326115	Frame_Shift_Del	A	-	p.V393fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408163	155408163	Frame_Shift_Del	T	-	p.K1928fs
LIHC	TCGA-DD-A3A0-01	LRRFIP1	ENST00000308482.9	chr2	238643910:238643976:238647874:238647952:238657006:238657042,	238647875	238647952	238647924	238647924	Frame_Shift_Del	G	-	p.R202fs
LIHC	TCGA-DD-A3A0-01	PSRC1	ENST00000429031.1,ENST00000369907.3,ENST00000369909.2,ENST00000369903.2,ENST00000369904.3,ENST00000438534.2,ENST00000409267.1,ENST00000409138.2,ENST00000418914.2	chr1	109823776:109823873:109824240:109824682:109825139:109825197,	109824241	109824682	109824582	109824582	Frame_Shift_Del	G	-	p.Q60fs
LIHC	TCGA-DD-A3A0-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89400503:89400658:89407265:89407379:89408219:89408330,	89407266	89407379	89407334	89407334	Frame_Shift_Del	T	-	p.N602fs
LIHC	TCGA-DD-A3A0-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25276072:25276209:25280450:25280601:25281160:25281329,	25280451	25280601	25280558	25280558	Frame_Shift_Del	C	-	p.S715fs
LIHC	TCGA-DD-A3A0-01	CCDC93	ENST00000460781.1,ENST00000376300.2	chr2	118732763:118732856:118735569:118735606:118743544:118743645,	118735570	118735606	118735578	118735578	Frame_Shift_Del	T	-	p.M217fs
LIHC	TCGA-DD-A3A0-01	ENTPD6	ENST00000360031.2,ENST00000435520.1	chr20	25176474:25176503:25187714:25188033:25190484:25190561,25187157:25187226:25187714:25188033:25190484:25190561,	25187715	25188033	25187773	25187773	Frame_Shift_Del	G	-	p.R39fs
LIHC	TCGA-DD-A3A0-01	ENTPD6	ENST00000433259.2,ENST00000376652.4,ENST00000425813.1	chr20	25176474:25176503:25187711:25188033:25190484:25190561,25187157:25187226:25187711:25188033:25190484:25190561,	25187712	25188033	25187773	25187773	Frame_Shift_Del	G	-	p.R39fs
LIHC	TCGA-DD-A3A0-01	SRRT	ENST00000445337.1	chr7	100485323:100485480:100485662:100485764:100486094:100486277,	100485663	100485764	100485681	100485681	Frame_Shift_Del	C	-	p.T782fs
LIHC	TCGA-DD-A3A0-01	CHEK2	ENST00000425190.2,ENST00000439346.1,ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000402731.1,ENST00000491919.1,ENST00000464581.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000447421.1,ENST00000456369.1,ENST00000405598.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1,ENST00000433028.2	chr22	29095825:29095925:29099492:29099554:29105993:29106047,	29099493	29099554	29099532	29099532	Frame_Shift_Del	T	-	p.N333fs
LIHC	TCGA-DD-A3A0-01	MACROD1	ENST00000543422.1,ENST00000255681.6	chr11	63766854:63766876:63767001:63767032:63767113:63767235,	63767002	63767032	63767024	63767024	Frame_Shift_Del	G	-	p.C266fs
LIHC	TCGA-DD-A3A0-01	ANKFY1	ENST00000572412.1,ENST00000341657.4,ENST00000574367.1,ENST00000570535.1	chr17	4075850:4075975:4076648:4076739:4077203:4077351,	4076649	4076739	4076695	4076695	Frame_Shift_Del	C	-	p.V1032fs
LIHC	TCGA-DD-A3A0-01	BCAR3	ENST00000370244.1	chr1	94107859:94107899:94140169:94140497:94147153:94147385,94107859:94107899:94140169:94140497:94171647:94171698,	94140170	94140497	94140264	94140264	Frame_Shift_Del	G	-	p.H75fs
LIHC	TCGA-DD-A3A0-01	STT3B	ENST00000295770.2	chr3	31659431:31659480:31661167:31661322:31663588:31663800,	31661168	31661322	31661295	31661295	Frame_Shift_Del	A	-	p.I433fs
LIHC	TCGA-DD-A3A0-01	CBFA2T2	ENST00000397798.2,ENST00000492345.1,ENST00000346541.3,ENST00000344201.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32198903:32199141:32207322:32207412:32210920:32211102,	32207323	32207412	32207380	32207380	Frame_Shift_Del	C	-	p.F168fs
LIHC	TCGA-DD-A3A0-01	USP34	ENST00000484179.1,ENST00000494867.1,ENST00000398571.2	chr2	61505522:61505578:61507378:61507483:61508224:61508274,	61507379	61507483	61507429	61507429	Frame_Shift_Del	A	-	p.W1736fs
LIHC	TCGA-DD-A3A0-01	SF1	ENST00000334944.5,ENST00000413951.1,ENST00000227503.9,ENST00000432725.1,ENST00000433274.2,ENST00000377387.1,ENST00000377394.3,ENST00000377390.3	chr11	64537851:64537880:64540901:64540977:64543969:64544098,	64540902	64540977	64540917	64540917	Frame_Shift_Del	G	-	p.P199fs
LIHC	TCGA-DD-A3A0-01	ADHFE1	ENST00000396623.3,ENST00000496501.1,ENST00000415254.1,ENST00000379385.4,ENST00000276576.7,ENST00000426810.1,ENST00000424777.2	chr8	67356828:67356983:67359498:67359576:67361099:67361205,67357452:67357649:67359498:67359576:67361099:67361205,	67359499	67359576	67359569	67359569	Frame_Shift_Del	A	-	p.V207fs
LIHC	TCGA-DD-A3A0-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395267	64395267	Frame_Shift_Del	A	-	p.R548fs
LIHC	TCGA-DD-A3A0-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211018375	211018375	Frame_Shift_Del	T	-	p.N311fs
LIHC	TCGA-DD-A3A0-01	AK7	ENST00000267584.4	chr14	96924419:96924549:96937814:96937943:96939023:96939092,	96937815	96937943	96937927	96937927	Frame_Shift_Del	A	-	p.A490fs
LIHC	TCGA-DD-A3A0-01	NDRG3	ENST00000349004.1,ENST00000373803.2,ENST00000359675.2,ENST00000540765.1,ENST00000422536.1,ENST00000373773.3	chr20	35309218:35309305:35310920:35310981:35312815:35312878,	35310921	35310981	35310974	35310974	Frame_Shift_Del	T	-	p.S131fs
LIHC	TCGA-DD-A3A0-01	RPGR	ENST00000318842.7,ENST00000309513.3,ENST00000338898.3	chrX	38135839:38136025:38146346:38146498:38147113:38147294,	38146347	38146498	38146456	38146456	Frame_Shift_Del	T	-	p.N599fs
LIHC	TCGA-DD-A3A0-01	RPGR	ENST00000339363.3	chrX	38135839:38136025:38146346:38147294:38150211:38150277,	38146347	38147294	38146456	38146456	Frame_Shift_Del	T	-	p.N599fs
LIHC	TCGA-DD-A3A0-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806378	33806378	Frame_Shift_Del	T	-	p.N284fs
LIHC	TCGA-DD-A3A0-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95332889:95332973:95356685:95356823:95360373:95360585,95332889:95332973:95356685:95356823:95357836:95358073,	95356686	95356823	95356749	95356749	Frame_Shift_Del	A	-	p.F515fs
LIHC	TCGA-DD-A3A0-01	REL	ENST00000394479.3	chr2	61147175:61147244:61147708:61147777:61148897:61150119,	61147709	61147777	61147771	61147771	Frame_Shift_Del	A	-	p.F360fs
LIHC	TCGA-DD-A3A0-01	CDH23	ENST00000398809.4,ENST00000299366.7,ENST00000461841.3,ENST00000398842.3	chr10	73270876:73270969:73326498:73326693:73330546:73330675,	73326499	73326693	73326586	73326586	Frame_Shift_Del	C	-	p.Q172fs
LIHC	TCGA-DD-A3A0-01	CEP76	ENST00000262127.2,ENST00000423709.2,ENST00000590143.1	chr18	12674534:12674752:12678107:12678441:12680660:12680827,	12678108	12678441	12678387	12678387	Frame_Shift_Del	T	-	p.P449fs
LIHC	TCGA-DD-A3A0-01	TRAF5	ENST00000427925.2,ENST00000488428.1,ENST00000261464.5	chr1	211500178:211500231:211526580:211526799:211527751:211527809,	211526581	211526799	211526743	211526743	Frame_Shift_Del	C	-	p.N54fs
LIHC	TCGA-DD-A3A0-01	UBAC1	ENST00000478485.1,ENST00000371756.3	chr9	138839722:138839751:138845525:138845599:138847140:138847261,	138845526	138845599	138845578	138845578	Frame_Shift_Del	T	-	p.K94fs
LIHC	TCGA-DD-A3A0-01	MAN2B1	ENST00000466794.1,ENST00000221363.4,ENST00000456935.2	chr19	12759949:12760030:12760154:12760242:12760726:12760828,	12760155	12760242	12760238	12760238	Frame_Shift_Del	C	-	p.D758fs
LIHC	TCGA-DD-A3A0-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292465	96292465	Frame_Shift_Del	T	-	p.D139fs
LIHC	TCGA-DD-A3A0-01	ACTN1	ENST00000193403.6,ENST00000556083.1	chr14	69345174:69345240:69345705:69345786:69346678:69346825,69343798:69343957:69345705:69345786:69346678:69346825,	69345706	69345786	69345708	69345708	Frame_Shift_Del	G	-	p.Q787fs
LIHC	TCGA-DD-A3A0-01	HAGHL	ENST00000564537.1,ENST00000341413.4,ENST00000562141.1,ENST00000389703.3,ENST00000549114.1,ENST00000567414.1,ENST00000389701.5,ENST00000561546.1,ENST00000568141.1	chr16	777481:777614:777964:778029:778115:778233,	777965	778029	777988	777988	Frame_Shift_Del	G	-	p.E43fs
LIHC	TCGA-DD-A3A0-01	ADAR	ENST00000368471.3,ENST00000368474.4,ENST00000292205.5,ENST00000529168.1	chr1	154560600:154560734:154561026:154561149:154561844:154561938,	154561027	154561149	154561054	154561054	Frame_Shift_Del	T	-	p.K953fs
LIHC	TCGA-DD-A3A0-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1856fs
LIHC	TCGA-DD-A3A0-01	CKAP2L	ENST00000302450.6,ENST00000481732.1,ENST00000435431.1	chr2	113514770:113514791:113520079:113520146:113522138:113522194,113518289:113518341:113520079:113520146:113522138:113522194,	113520080	113520146	113520086	113520086	Frame_Shift_Del	T	-	p.N33fs
LIHC	TCGA-DD-A3A0-01	ADAM33	ENST00000350009.2,ENST00000356518.2,ENST00000466620.1,ENST00000379861.4	chr20	3649945:3650017:3650192:3650284:3651652:3651800,	3650193	3650284	3650236	3650236	Frame_Shift_Del	G	-	p.M764fs
LIHC	TCGA-DD-A3A0-01	CAPN3	ENST00000397204.4	chr15	42695938:42695975:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42701500:42701578,	42698124	42698141	42698130	42698130	Frame_Shift_Del	A	-	p.K596fs
LIHC	TCGA-DD-A3A0-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247480	149247480	Frame_Shift_Del	A	-	p.S1193fs
LIHC	TCGA-DD-A3A0-01	CKMT2	ENST00000505850.1,ENST00000254035.4,ENST00000424301.2,ENST00000437669.1	chr5	80550811:80551033:80552733:80552819:80553551:80553675,	80552734	80552819	80552810	80552810	Frame_Shift_Del	G	-	p.R249fs
LIHC	TCGA-DD-A3A0-01	ZFP64	ENST00000467811.1,ENST00000456175.1,ENST00000395989.3,ENST00000371523.4,ENST00000361387.2,ENST00000371518.2	chr20	50704930:50705182:50713911:50713974:50714976:50715005,	50713912	50713974	50713933	50713933	Frame_Shift_Del	G	-	p.R319fs
LIHC	TCGA-DD-A3A0-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284957	63284957	Frame_Shift_Del	A	-	p.G225fs
LIHC	TCGA-DD-A3A0-01	CLIP4	ENST00000404424.1,ENST00000401617.2,ENST00000401605.1,ENST00000320081.5	chr2	29380069:29380213:29383198:29383333:29386696:29386820,	29383199	29383333	29383293	29383293	Frame_Shift_Del	G	-	p.L498fs
LIHC	TCGA-DD-A3A0-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676769	36676769	Frame_Shift_Del	A	-	p.C100X
LIHC	TCGA-DD-A3A0-01	DEPDC7	ENST00000311388.3,ENST00000241051.3	chr11	33049231:33049359:33050148:33050338:33052923:33053135,	33050149	33050338	33050250	33050250	Frame_Shift_Del	A	-	p.P231fs
LIHC	TCGA-DD-A3A0-01	SLC43A1	ENST00000533515.1,ENST00000529452.1,ENST00000528450.1,ENST00000278426.3,ENST00000534298.1	chr11	57258775:57258835:57259063:57259099:57259188:57259236,	57259064	57259099	57259093	57259093	Frame_Shift_Del	T	-	p.N342fs
LIHC	TCGA-DD-A3A0-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204418312:204418424:204418977:204419145:204423796:204423919,	204418978	204419145	204419065	204419065	Frame_Shift_Del	G	-	p.P716fs
LIHC	TCGA-DD-A3A0-01	PARVA	ENST00000538608.1,ENST00000528916.1,ENST00000550549.1,ENST00000539723.1,ENST00000334956.8,ENST00000533345.1	chr11	12495459:12495530:12499393:12499496:12518004:12518145,	12499394	12499496	12499491	12499491	Frame_Shift_Del	T	-	p.L172fs
LIHC	TCGA-DD-A3A0-01	PHYH	ENST00000263038.4,ENST00000479604.1,ENST00000453759.2,ENST00000396913.2,ENST00000396920.3	chr10	13333830:13333912:13336427:13336596:13337495:13337606,	13336428	13336596	13336580	13336580	Frame_Shift_Del	T	-	p.I88fs
LIHC	TCGA-DD-A3A0-01	TUB	ENST00000534099.1,ENST00000299506.2,ENST00000305253.4	chr11	8115592:8115736:8117044:8117212:8118231:8118353,	8117045	8117212	8117161	8117161	Frame_Shift_Del	G	-	p.G226fs
LIHC	TCGA-DD-A3A0-01	YTHDC2	ENST00000161863.4	chr5	112915282:112915392:112917113:112917406:112919998:112920176,	112917114	112917406	112917159	112917159	Frame_Shift_Del	T	-	p.L1133fs
LIHC	TCGA-DD-A3A0-01	GPCPD1	ENST00000473797.1,ENST00000379019.4,ENST00000481038.1	chr20	5548166:5548206:5550792:5550885:5554560:5554615,	5550793	5550885	5550794	5550794	Frame_Shift_Del	T	-	p.K383fs
LIHC	TCGA-DD-A3A0-01	RGS6	ENST00000434263.2,ENST00000343854.6,ENST00000556437.1,ENST00000553530.1,ENST00000555571.1,ENST00000404301.2,ENST00000402788.2,ENST00000406236.4,ENST00000554474.1,ENST00000407322.4,ENST00000554782.1,ENST00000553525.1,ENST00000355512.6	chr14	72976861:72976987:72985058:72985245:73002893:73002983,	72985059	72985245	72985093	72985093	Frame_Shift_Del	C	-	p.Q375fs
LIHC	TCGA-DD-A3A0-01	ENTPD5	ENST00000557325.1,ENST00000334696.6	chr14	74442638:74442718:74443026:74443115:74443726:74443762,	74443027	74443115	74443074	74443074	Frame_Shift_Del	C	-	p.D199fs
LIHC	TCGA-DD-A3A0-01	PTS	ENST00000528679.1,ENST00000531673.1	chr11	112100930:112100953:112101348:112101405:112103885:112103956,112099316:112099396:112101348:112101405:112103885:112103951,	112101349	112101405	112101391	112101391	Frame_Shift_Del	A	-	p.L76fs
LIHC	TCGA-DD-A3A0-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103156983:103157115:103158261:103158334:103173821:103173982,	103158262	103158334	103158325	103158325	Frame_Shift_Del	A	-	p.C3702X
LIHC	TCGA-DD-A3A0-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174185	105174185	Frame_Shift_Del	C	-	p.S527fs
LIHC	TCGA-DD-A3A0-01	HGS	ENST00000575058.1,ENST00000329138.4	chr17	79660704:79660782:79660899:79660995:79661844:79661883,	79660900	79660995	79660963	79660963	Frame_Shift_Del	C	-	p.A301fs
LIHC	TCGA-DD-A3A0-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225367708:225367789:225368368:225368539:225370672:225370849,	225368369	225368539	225368413	225368413	Frame_Shift_Del	T	-	p.S451fs
LIHC	TCGA-DD-A3A0-01	EPB41L4A	ENST00000261486.5	chr5	111541117:111541201:111545588:111545679:111570330:111570446,	111545589	111545679	111545590	111545590	Frame_Shift_Del	T	-	p.S393fs
LIHC	TCGA-DD-A3A0-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000435201.1	chr7	73522200:73522287:73523234:73523366:73525977:73526037,	73523235	73523366	73523283	73523283	Frame_Shift_Del	G	-	p.I400fs
LIHC	TCGA-DD-A3A0-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42050249	42050249	Frame_Shift_Del	T	-	p.T74fs
LIHC	TCGA-DD-A3A0-01	TDG	ENST00000436021.2	chr12	104359680:104359838:104370695:104370838:104373608:104373698,104361631:104361749:104370695:104370838:104373608:104373850,	104370696	104370838	104370720	104370720	Frame_Shift_Del	T	-	p.A16fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450361	155450361	Frame_Shift_Del	G	-	p.P767fs
LIHC	TCGA-DD-A3A0-01	TBC1D1	ENST00000261439.4,ENST00000510573.2,ENST00000508802.1	chr4	38091552:38091738:38097549:38097711:38104619:38104778,	38097550	38097711	38097556	38097556	Frame_Shift_Del	A	-	p.E842fs
LIHC	TCGA-DD-A3A0-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599117.1,ENST00000598725.1	chr19	39950531:39950600:39955437:39955689:39957119:39957209,	39955438	39955689	39955533	39955533	Frame_Shift_Del	G	-	p.E240fs
LIHC	TCGA-DD-A3A0-01	SLMAP	ENST00000417128.1,ENST00000295952.3,ENST00000428312.1,ENST00000442599.2,ENST00000449503.2,ENST00000494088.1,ENST00000416658.1,ENST00000295951.3,ENST00000495364.1	chr3	57898884:57899002:57902632:57902804:57908615:57908750,	57902633	57902804	57902753	57902753	Frame_Shift_Del	A	-	p.L719X
LIHC	TCGA-DD-A3A0-01	NEK10	ENST00000341435.5,ENST00000429845.2	chr3	27329188:27329234:27332107:27332245:27332752:27332881,	27332108	27332245	27332187	27332187	Frame_Shift_Del	G	-	p.P555fs
LIHC	TCGA-DD-A3A0-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4,ENST00000412011.1	chr2	24509191:24509220:24516556:24516644:24518532:24518580,	24516557	24516644	24516590	24516590	Frame_Shift_Del	T	-	p.R564fs
LIHC	TCGA-DD-A3A0-01	RCCD1	ENST00000557266.1,ENST00000394258.2,ENST00000555155.1,ENST00000555737.1,ENST00000556618.1	chr15	91500342:91500733:91500833:91500955:91503129:91503208,	91500834	91500955	91500927	91500927	Frame_Shift_Del	G	-	p.A217fs
LIHC	TCGA-DD-A3A0-01	KIAA0355	ENST00000299505.6	chr19	34830771:34830897:34832326:34833360:34838781:34838947,	34832327	34833360	34832365	34832365	Frame_Shift_Del	G	-	p.R509fs
LIHC	TCGA-DD-A3A0-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206728	89206728	Frame_Shift_Del	T	-	p.D35fs
LIHC	TCGA-DD-A3A0-01	ANKRD42	ENST00000533342.1,ENST00000393392.2,ENST00000531895.1,ENST00000260047.6	chr11	82935896:82936097:82938788:82938914:82947445:82947551,	82938789	82938914	82938845	82938845	Frame_Shift_Del	A	-	p.K253fs
LIHC	TCGA-DD-A3A0-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000521693.1,ENST00000230538.7,ENST00000604740.1,ENST00000522006.1	chr6	112443263:112443404:112450123:112450277:112451077:112451190,	112450124	112450277	112450166	112450166	Frame_Shift_Del	T	-	p.G1416fs
LIHC	TCGA-DD-A3A0-01	ARSJ	ENST00000509829.1	chr4	114827851:114827901:114899592:114900248:114900611:114900803,	114899593	114900248	114899693	114899693	Frame_Shift_Del	T	-	p.T100fs
LIHC	TCGA-DD-A3A0-01	RAB1A	ENST00000356214.7	chr2	65315430:65315824:65316072:65316204:65318116:65318212,65315430:65315824:65316072:65316204:65331867:65331940,65315430:65315824:65316072:65316204:65325104:65325198,	65316073	65316204	65316146	65316146	Frame_Shift_Del	T	-	p.N116fs
LIHC	TCGA-DD-A3A0-01	PIAS2	ENST00000545673.1	chr18	44435527:44435578:44444126:44444211:44470542:44471017,44435527:44435578:44444126:44444211:44497284:44497308,	44444127	44444211	44444168	44444168	Frame_Shift_Del	A	-	p.A182fs
LIHC	TCGA-DD-A3A0-01	NR1H3	ENST00000481020.1,ENST00000481889.2	chr11	47282791:47283000:47283097:47283569:47289463:47289559,	47283098	47283569	47283563	47283563	Frame_Shift_Del	A	-	p.A333fs
LIHC	TCGA-DD-A3A0-01	NR1H3	ENST00000531660.1,ENST00000405853.3,ENST00000405576.1,ENST00000527949.1,ENST00000407404.1	chr11	47283097:47283277:47283469:47283569:47289463:47289559,47282791:47283000:47283469:47283569:47289463:47289559,	47283470	47283569	47283563	47283563	Frame_Shift_Del	A	-	p.A333fs
LIHC	TCGA-DD-A3A0-01	NUMB	ENST00000555238.1,ENST00000555307.1,ENST00000557597.1,ENST00000356296.4,ENST00000359560.3,ENST00000555859.1,ENST00000555394.1,ENST00000554394.1,ENST00000355058.3,ENST00000535282.1,ENST00000554546.1,ENST00000556772.1	chr14	73743916:73744001:73753817:73754022:73759441:73759582,73750961:73751082:73753817:73754022:73759441:73759582,	73753818	73754022	73753987	73753987	Frame_Shift_Del	A	-	p.A163fs
LIHC	TCGA-DD-A3A0-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91486141:91486312:91488121:91488293:91489843:91490144,	91488122	91488293	91488144	91488144	Frame_Shift_Del	G	-	p.V350fs
LIHC	TCGA-DD-A3A0-01	AK7	ENST00000267584.4	chr14	96912853:96912944:96916138:96916216:96917757:96917907,	96916139	96916216	96916175	96916175	Frame_Shift_Del	A	-	p.Q302fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11D	ENST00000502822.1	chr4	68719785:68719904:68725274:68725396:68749643:68749678,	68725275	68725396	68725283	68725283	Frame_Shift_Del	A	-	p.L41fs
LIHC	TCGA-DD-A3A0-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351458	169351458	Frame_Shift_Del	A	-	p.Q319fs
LIHC	TCGA-DD-A3A0-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373660	242373660	Frame_Shift_Del	T	-	p.T318fs
LIHC	TCGA-DD-A3A0-01	RAD51D	ENST00000460118.2,ENST00000586210.1	chr17	33433459:33433500:33434006:33434141:33434384:33434466,33433459:33433500:33434006:33434141:33445519:33445638,	33434007	33434141	33434027	33434027	Frame_Shift_Del	T	-	p.T174fs
LIHC	TCGA-DD-A3A0-01	RAD51D	ENST00000590380.1	chr17	33433404:33433500:33434006:33434080:33434384:33434466,	33434007	33434080	33434027	33434027	Frame_Shift_Del	T	-	p.T174fs
LIHC	TCGA-DD-A3A0-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70541738:70541914:70550736:70550879:70550969:70551093,	70550737	70550879	70550813	70550813	Frame_Shift_Del	T	-	p.N787fs
LIHC	TCGA-DD-A3A0-01	SPPL3	ENST00000543181.1,ENST00000543608.1,ENST00000353487.2,ENST00000536996.1	chr12	121221476:121221555:121222276:121222396:121229271:121229360,	121222277	121222396	121222293	121222293	Frame_Shift_Del	A	-	p.T99fs
LIHC	TCGA-DD-A3A0-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099911	133099911	Frame_Shift_Del	G	-	p.E452fs
LIHC	TCGA-DD-A3A0-01	ADRM1	ENST00000253003.2	chr20	60881703:60881790:60882426:60882508:60882651:60882884,	60882427	60882508	60882434	60882434	Frame_Shift_Del	G	-	p.L183fs
LIHC	TCGA-DD-A3A0-01	PDHX	ENST00000430469.2,ENST00000227868.4	chr11	34938187:34938362:34952950:34953031:34969052:34969150,	34952951	34953031	34953022	34953022	Frame_Shift_Del	A	-	p.L77fs
LIHC	TCGA-DD-A3A0-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29822101	29822101	Frame_Shift_Del	G	-	p.Q399fs
LIHC	TCGA-DD-A3A0-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937675	167937675	Frame_Shift_Del	A	-	p.E479fs
LIHC	TCGA-DD-A3A0-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75190758:75190993:75192283:75192393:75196565:75196755,	75192284	75192393	75192380	75192380	Frame_Shift_Del	C	-	p.T269fs
LIHC	TCGA-DD-A3A0-01	ZMPSTE24	ENST00000372759.3	chr1	40747036:40747199:40751596:40751701:40756525:40756669,	40751597	40751701	40751681	40751681	Frame_Shift_Del	A	-	p.V346fs
LIHC	TCGA-DD-A3A0-01	ITGA9	ENST00000264741.5	chr3	37826472:37826569:37845313:37845433:37860381:37860881,	37845314	37845433	37845344	37845344	Frame_Shift_Del	C	-	p.E973fs
LIHC	TCGA-DD-A3A0-01	TM9SF2	ENST00000376387.4	chr13	100189992:100190117:100191699:100191811:100192967:100193047,	100191700	100191811	100191778	100191778	Frame_Shift_Del	A	-	p.I265fs
LIHC	TCGA-DD-A3A0-01	XYLT2	ENST00000017003.2	chr17	48433871:48434134:48435567:48435901:48437329:48438512,48434478:48434613:48435567:48435901:48437329:48438512,	48435568	48435901	48435819	48435819	Frame_Shift_Del	C	-	p.L731fs
LIHC	TCGA-DD-A3A0-01	TMEM171	ENST00000454765.2	chr5	72419692:72419840:72424216:72424358:72427367:72427636,72419132:72419840:72424216:72424358:72427364:72427644,	72424217	72424358	72424240	72424240	Frame_Shift_Del	C	-	p.P221fs
LIHC	TCGA-DD-A3A0-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61298792:61298927:61304054:61304293:61308586:61308645,61300592:61300686:61304054:61304293:61308586:61308645,	61304055	61304293	61304238	61304238	Frame_Shift_Del	A	-	p.I205fs
LIHC	TCGA-DD-A3A0-01	NOS3	ENST00000467517.1,ENST00000297494.3,ENST00000484524.1	chr7	150692290:150692402:150693491:150693640:150693850:150694013,	150693492	150693640	150693569	150693569	Frame_Shift_Del	C	-	p.G116fs
LIHC	TCGA-DD-A3A0-01	ABCB9	ENST00000540285.1,ENST00000346530.5,ENST00000542678.1,ENST00000546289.1,ENST00000392439.3,ENST00000280560.8	chr12	123414557:123414718:123416738:123416875:123419818:123419978,	123416739	123416875	123416813	123416813	Frame_Shift_Del	C	-	p.A656fs
LIHC	TCGA-DD-A3A0-01	RNF144A	ENST00000320892.6,ENST00000416587.1	chr2	7081078:7081278:7137046:7137192:7154584:7154614,	7137047	7137192	7137130	7137130	Frame_Shift_Del	G	-	p.L24fs
LIHC	TCGA-DD-A3A0-01	ATF3	ENST00000465155.1,ENST00000341491.4	chr1	212782256:212782272:212788359:212788603:212791468:212791576,	212788360	212788603	212788594	212788594	Frame_Shift_Del	A	-	p.T77fs
LIHC	TCGA-DD-A3A0-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43672281:43672361:43675500:43675702:43677988:43678114,	43675501	43675702	43675520	43675520	Frame_Shift_Del	G	-	p.H180fs
LIHC	TCGA-DD-A3A0-01	ABCC8	ENST00000389817.3,ENST00000302539.4,ENST00000527905.1	chr11	17448595:17448701:17449413:17449489:17449835:17449952,	17449414	17449489	17449417	17449417	Frame_Shift_Del	G	-	p.R705fs
LIHC	TCGA-DD-A3A0-01	PLCB3	ENST00000279230.6,ENST00000325234.5,ENST00000540288.1	chr11	64030147:64030280:64030969:64031069:64031162:64031267,	64030970	64031069	64031017	64031017	Frame_Shift_Del	G	-	p.E801fs
LIHC	TCGA-DD-A3A0-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156035	50156035	Frame_Shift_Del	C	-	p.R796fs
LIHC	TCGA-DD-A3A0-01	HRG	ENST00000232003.4	chr3	186390579:186390656:186392877:186392979:186394835:186396020,	186392878	186392979	186392941	186392941	Frame_Shift_Del	A	-	p.P234fs
LIHC	TCGA-DD-A3A0-01	TBC1D23	ENST00000471098.1,ENST00000344949.5,ENST00000486274.1,ENST00000394144.4,ENST00000485687.1	chr3	100000585:100000691:100002450:100002655:100009421:100009489,	100002451	100002655	100002490	100002490	Frame_Shift_Del	T	-	p.L104fs
LIHC	TCGA-DD-A3A0-01	CD82	ENST00000227155.4,ENST00000342935.3,ENST00000530931.1,ENST00000525898.1	chr11	44636821:44636923:44639711:44639915:44640189:44640273,	44639712	44639915	44639810	44639810	Frame_Shift_Del	G	-	p.K179fs
LIHC	TCGA-DD-A3A0-01	PHGDH	ENST00000493622.1,ENST00000369407.3,ENST00000369409.4	chr1	120263792:120263944:120265998:120266064:120269473:120269528,	120265999	120266064	120266001	120266001	Frame_Shift_Del	C	-	p.T98fs
LIHC	TCGA-DD-A3A0-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124421	76124421	Frame_Shift_Del	C	-	p.E90fs
LIHC	TCGA-DD-A3A0-01	PCSK9	ENST00000490692.1,ENST00000302118.5	chr1	55523100:55523187:55523708:55523882:55524171:55524320,	55523709	55523882	55523861	55523861	Frame_Shift_Del	C	-	p.L444fs
LIHC	TCGA-DD-A3A0-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961559	41961559	Frame_Shift_Del	T	-	p.V156fs
LIHC	TCGA-DD-A3A0-01	C2CD5	ENST00000542683.1	chr12	22646156:22646271:22666227:22666313:22670919:22671071,	22666228	22666313	22666279	22666279	Frame_Shift_Del	C	-	p.P330fs
LIHC	TCGA-DD-A3A0-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743653	130743653	Frame_Shift_Del	A	-	p.D167fs
LIHC	TCGA-DD-A3A0-01	RBFOX1	ENST00000547372.1,ENST00000547605.1,ENST00000535565.2,ENST00000551752.1,ENST00000422070.4,ENST00000550418.1,ENST00000355637.4,ENST00000436368.2,ENST00000547338.1,ENST00000552089.1,ENST00000311745.5,ENST00000340209.4	chr16	7657286:7657340:7680604:7680685:7703816:7703848,	7680605	7680685	7680656	7680656	Frame_Shift_Del	C	-	p.A263fs
LIHC	TCGA-DD-A3A0-01	ZCCHC24	ENST00000372336.3,ENST00000372333.3	chr10	81145792:81146214:81154031:81154196:81192313:81192514,	81154032	81154196	81154153	81154153	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-DD-A3A0-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27157926	27157926	Frame_Shift_Del	C	-	p.R50fs
LIHC	TCGA-DD-A3A0-01	AKT1	ENST00000544168.1,ENST00000554848.1,ENST00000402615.2,ENST00000407796.2,ENST00000554581.1,ENST00000349310.3,ENST00000555528.1	chr14	105239791:105239917:105240248:105240317:105241274:105241340,	105240249	105240317	105240253	105240253	Frame_Shift_Del	C	-	p.G233fs
LIHC	TCGA-DD-A3A0-01	COL11A2	ENST00000341947.2,ENST00000457788.1,ENST00000374714.1	chr6	33148887:33148947:33151921:33152101:33153477:33153555,33148887:33148947:33151921:33152101:33154403:33154595,33148887:33148947:33151921:33152101:33152768:33152831,	33151922	33152101	33152022	33152022	Frame_Shift_Del	G	-	p.P340fs
LIHC	TCGA-DD-A3A0-01	BIRC2	ENST00000527910.1,ENST00000533742.1,ENST00000530675.1,ENST00000532672.1,ENST00000227758.2,ENST00000534130.1	chr11	102234398:102234447:102239036:102239279:102248226:102248328,	102239037	102239279	102239232	102239232	Frame_Shift_Del	A	-	p.E440fs
LIHC	TCGA-DD-A3A0-01	WDR72	ENST00000557913.1,ENST00000560036.1,ENST00000396328.1,ENST00000360509.5,ENST00000559418.1	chr15	54003532:54003678:54004968:54005088:54006630:54006704,	54004969	54005088	54004983	54004983	Frame_Shift_Del	A	-	p.S233fs
LIHC	TCGA-DD-A3A0-01	MAMDC4	ENST00000479475.1	chr9	139752851:139752998:139753170:139753584:139753660:139753769,	139753171	139753584	139753286	139753286	Frame_Shift_Del	G	-	p.M979fs
LIHC	TCGA-DD-A3A0-01	MAMDC4	ENST00000317446.2,ENST00000485732.1,ENST00000445819.1	chr9	139752851:139752998:139753170:139753305:139753456:139753584,	139753171	139753305	139753286	139753286	Frame_Shift_Del	G	-	p.M979fs
LIHC	TCGA-DD-A3A0-01	MYOM1	ENST00000356443.4,ENST00000400569.3	chr18	3126698:3126895:3129229:3129517:3131372:3131494,	3129230	3129517	3129514	3129514	Frame_Shift_Del	C	-	p.G837fs
LIHC	TCGA-DD-A3A0-01	NAALAD2	ENST00000534061.1,ENST00000321955.4	chr11	89909139:89909230:89911020:89911285:89914787:89914869,	89911021	89911285	89911108	89911108	Frame_Shift_Del	A	-	p.F560fs
LIHC	TCGA-DD-A3A0-01	SLC11A2	ENST00000262052.5,ENST00000547688.1,ENST00000262051.7,ENST00000541174.2,ENST00000545993.2,ENST00000394904.3,ENST00000546636.1,ENST00000550782.1,ENST00000547198.1,ENST00000546743.1	chr12	51385972:51386122:51386592:51386712:51388326:51388413,	51386593	51386712	51386667	51386667	Frame_Shift_Del	A	-	p.W404fs
LIHC	TCGA-DD-A3A0-01	ARL2BP	ENST00000563234.1,ENST00000219204.3	chr16	57279991:57280053:57282448:57282555:57283678:57283764,	57282449	57282555	57282542	57282542	Frame_Shift_Del	T	-	p.I65fs
LIHC	TCGA-DD-A3A0-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000340595.3,ENST00000351898.6	chr4	72352664:72352735:72363217:72363409:72397778:72397892,	72363218	72363409	72363374	72363374	Frame_Shift_Del	A	-	p.L710fs
LIHC	TCGA-DD-A3A0-01	NXPE4	ENST00000375478.3,ENST00000424261.2	chr11	114441653:114442195:114450853:114451060:114452446:114452508,	114450854	114451060	114450944	114450944	Frame_Shift_Del	T	-	p.M337fs
LIHC	TCGA-DD-A3A0-01	RUFY2	ENST00000388768.2,ENST00000466493.1,ENST00000602465.1	chr10	70137931:70138427:70139180:70139278:70140988:70141013,70136609:70136729:70139180:70139278:70140988:70141013,	70139181	70139278	70139221	70139221	Frame_Shift_Del	T	-	p.T424fs
LIHC	TCGA-DD-A3A0-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44041615:44041728:44047053:44047239:44049935:44050074,	44047054	44047239	44047175	44047175	Frame_Shift_Del	G	-	p.H510fs
LIHC	TCGA-DD-A3A0-01	CDKAL1	ENST00000274695.4,ENST00000378610.1	chr6	21065280:21065459:21108631:21108694:21198251:21198335,	21108632	21108694	21108646	21108646	Frame_Shift_Del	A	-	p.T417fs
LIHC	TCGA-DD-A3A0-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264632	75264632	Frame_Shift_Del	A	-	p.F877fs
LIHC	TCGA-DD-A3A0-01	TESK1	ENST00000467424.1,ENST00000336395.5	chr9	35607323:35607406:35607578:35607669:35607924:35608008,	35607579	35607669	35607647	35607647	Frame_Shift_Del	G	-	p.R230fs
LIHC	TCGA-DD-A3A0-01	TSPAN18	ENST00000340160.3,ENST00000518429.2,ENST00000533786.1,ENST00000520999.2,ENST00000520358.2	chr11	44927957:44928030:44931255:44931450:44939522:44939597,	44931256	44931450	44931375	44931375	Frame_Shift_Del	G	-	p.M61fs
LIHC	TCGA-DD-A3A0-01	RMND5A	ENST00000283632.4	chr2	86980580:86980681:86992149:86992316:86992981:86993147,	86992150	86992316	86992185	86992185	Frame_Shift_Del	A	-	p.Q186fs
LIHC	TCGA-DD-A3A0-01	RIPK1	ENST00000259808.4	chr6	3068657:3068895:3076997:3077221:3078012:3078169,	3076998	3077221	3077159	3077159	Frame_Shift_Del	T	-	p.C34fs
LIHC	TCGA-DD-A3A0-01	DHTKD1	ENST00000263035.4	chr10	12149907:12150014:12154898:12155063:12159671:12159754,	12154899	12155063	12154919	12154919	Frame_Shift_Del	G	-	p.E725fs
LIHC	TCGA-DD-A3A0-01	CFH	ENST00000466229.1,ENST00000367429.4,ENST00000470918.1	chr1	196706037:196706136:196706604:196706790:196709748:196709922,	196706605	196706790	196706674	196706674	Frame_Shift_Del	A	-	p.E889fs
LIHC	TCGA-DD-A3A0-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R201fs
LIHC	TCGA-DD-A3A0-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133098904	133098904	Frame_Shift_Del	C	-	p.G116fs
LIHC	TCGA-DD-A3A0-01	HDC	ENST00000558679.1,ENST00000267845.3,ENST00000559683.1,ENST00000543581.1	chr15	50546726:50546861:50549621:50549744:50550600:50550714,	50549622	50549744	50549687	50549687	Frame_Shift_Del	T	-	p.M126fs
LIHC	TCGA-DD-A3A0-01	GPCPD1	ENST00000481690.1,ENST00000379019.4,ENST00000481038.1	chr20	5559025:5559257:5560653:5560777:5564926:5564968,	5560654	5560777	5560674	5560674	Frame_Shift_Del	T	-	p.L152X
LIHC	TCGA-DD-A3A0-01	CYP2B6	ENST00000598834.1	chr19	41497308:41497381:41509905:41510068:41510201:41510351,	41509906	41510068	41510031	41510031	Frame_Shift_Del	A	-	p.G99fs
LIHC	TCGA-DD-A3A0-01	DTX3L	ENST00000383661.3	chr3	122283273:122283460:122284705:122284917:122289301:122289519,	122284706	122284917	122284754	122284754	Frame_Shift_Del	A	-	p.E79fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000498494.1,ENST00000423070.1,ENST00000427977.2,ENST00000473693.1,ENST00000368868.5,ENST00000427867.2,ENST00000426705.2,ENST00000455397.1,ENST00000443708.1,ENST00000435071.1	chr1	151340674:151340795:151341917:151342030:151342188:151342245,151341543:151341665:151341917:151342030:151342188:151342245,	151341918	151342030	151341939	151341939	Frame_Shift_Del	G	-	p.K94fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000470345.1,ENST00000474352.1	chr1	151340674:151340795:151341479:151342245:151345113:151345159,	151341480	151342245	151341939	151341939	Frame_Shift_Del	G	-	p.K94fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000458566.1	chr1	151341543:151341665:151341917:151341982:151342188:151342245,	151341918	151341982	151341939	151341939	Frame_Shift_Del	G	-	p.K94fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000492643.1,ENST00000493560.1,ENST00000463664.1	chr1	151340674:151340795:151341479:151342030:151342188:151342245,	151341480	151342030	151341939	151341939	Frame_Shift_Del	G	-	p.K94fs
LIHC	TCGA-DD-A3A0-01	FKBP5	ENST00000539068.1,ENST00000357266.4,ENST00000536438.1,ENST00000542713.1	chr6	35586872:35586987:35587908:35588051:35604790:35604935,	35587909	35588051	35587912	35587912	Frame_Shift_Del	A	-	p.E131fs
LIHC	TCGA-DD-A3A0-01	STEAP1B	ENST00000406890.2	chr7	22532295:22532348:22532942:22533398:22534390:22534505,	22532943	22533398	22533027	22533027	Frame_Shift_Del	A	-	p.A172fs
LIHC	TCGA-DD-A3A0-01	STEAP1B	ENST00000483679.1,ENST00000424363.1,ENST00000439708.1,ENST00000404369.4	chr7	22532295:22532348:22532942:22533455:22534390:22534505,	22532943	22533455	22533027	22533027	Frame_Shift_Del	A	-	p.A172fs
LIHC	TCGA-DD-A3A0-01	CNTN3	ENST00000263665.6	chr3	74411040:74411191:74413617:74413747:74414716:74414853,	74413618	74413747	74413707	74413707	Frame_Shift_Del	T	-	p.N375fs
LIHC	TCGA-DD-A3A0-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000492275.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000463216.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38480691:38480746:38494116:38494279:38495282:38495328,	38494117	38494279	38494152	38494152	Frame_Shift_Del	G	-	p.L312fs
LIHC	TCGA-DD-A3A0-01	LIG3	ENST00000586058.1,ENST00000378526.4,ENST00000590630.1,ENST00000262327.5	chr17	33323082:33323214:33323592:33323672:33324756:33324844,	33323593	33323672	33323630	33323630	Frame_Shift_Del	T	-	p.V594fs
LIHC	TCGA-DD-A3A0-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067256	62067256	Frame_Shift_Del	G	-	p.L295fs
LIHC	TCGA-DD-A3A0-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067256	62067256	Frame_Shift_Del	G	-	p.L295fs
LIHC	TCGA-DD-A3A0-01	RNPS1	ENST00000564601.1	chr16	2314315:2314332:2314573:2314761:2318055:2318072,2314315:2314332:2314573:2314761:2317575:2317853,	2314574	2314761	2314622	2314622	Frame_Shift_Del	T	-	p.K8fs
LIHC	TCGA-DD-A3A0-01	KLK6	ENST00000594641.1,ENST00000376851.3,ENST00000310157.2	chr19	51462413:51462572:51470424:51470581:51471320:51471368,51466722:51466805:51470424:51470581:51471796:51471847,51466722:51466805:51470424:51470581:51471320:51471368,	51470425	51470581	51470427	51470427	Frame_Shift_Del	T	-	p.P66fs
LIHC	TCGA-DD-A3A0-01	SEMA5B	ENST00000393583.2	chr3	122667428:122667556:122679986:122680148:122693949:122694217,122667428:122667556:122679986:122680148:122746310:122746425,122667428:122667556:122679986:122680148:122711631:122712120,	122679987	122680148	122680077	122680077	Frame_Shift_Del	G	-	p.H66fs
LIHC	TCGA-DD-A3A0-01	KHSRP	ENST00000595223.1,ENST00000398148.3	chr19	6415619:6415745:6415818:6415907:6416308:6416418,	6415819	6415907	6415893	6415893	Frame_Shift_Del	G	-	p.P538fs
LIHC	TCGA-DD-A3A0-01	PXDN	ENST00000467191.1,ENST00000433670.1,ENST00000252804.4	chr2	1668762:1668846:1669985:1670258:1677414:1677584,	1669986	1670258	1670061	1670061	Frame_Shift_Del	C	-	p.D406fs
LIHC	TCGA-DD-A3A0-01	DOCK5	ENST00000276440.7,ENST00000481100.1	chr8	25132901:25132957:25136084:25136181:25149539:25149688,	25136085	25136181	25136115	25136115	Frame_Shift_Del	C	-	p.L85fs
LIHC	TCGA-DD-A3A0-01	DCST2	ENST00000368424.3,ENST00000485982.1,ENST00000295536.5,ENST00000368423.1	chr1	154999023:154999191:155001708:155001873:155002559:155002717,	155001709	155001873	155001838	155001838	Frame_Shift_Del	A	-	p.Y405fs
LIHC	TCGA-DD-A3A0-01	SLC35D2	ENST00000253270.7	chr9	99086372:99086451:99098998:99099066:99106185:99106275,	99098999	99099066	99099002	99099002	Frame_Shift_Del	A	-	p.L250fs
LIHC	TCGA-DD-A3A0-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000552542.1,ENST00000548465.1,ENST00000552642.1,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000552897.1,ENST00000550785.1	chr12	113698172:113698297:113703984:113704161:113705647:113705684,	113703985	113704161	113704017	113704017	Frame_Shift_Del	C	-	p.H162fs
LIHC	TCGA-DD-A3A0-01	SEC31A	ENST00000443462.2,ENST00000505984.1,ENST00000508502.1,ENST00000264405.5	chr4	83750152:83750211:83763337:83763634:83765538:83765613,	83763338	83763634	83763594	83763594	Frame_Shift_Del	C	-	p.S890fs
LIHC	TCGA-DD-A3A0-01	SEC31A	ENST00000432794.1	chr4	83750152:83750211:83763292:83763634:83765538:83765613,83752089:83752128:83763292:83763634:83765538:83765613,	83763293	83763634	83763594	83763594	Frame_Shift_Del	C	-	p.S890fs
LIHC	TCGA-DD-A3A0-01	IRAK1	ENST00000369980.3,ENST00000369973.3	chrX	153277309:153277368:153278493:153278884:153279492:153279555,153278035:153278129:153278493:153278884:153281482:153281524,153278035:153278129:153278493:153278884:153279492:153279555,	153278494	153278884	153278528	153278528	Frame_Shift_Del	C	-	p.S633fs
LIHC	TCGA-DD-A3A0-01	IRAK1	ENST00000437278.1	chrX	153278035:153278129:153278493:153278794:153279492:153279555,153278035:153278129:153278493:153278794:153281482:153281524,	153278494	153278794	153278528	153278528	Frame_Shift_Del	C	-	p.S633fs
LIHC	TCGA-DD-A3A0-01	C6orf89	ENST00000480824.2,ENST00000355190.3,ENST00000373685.1,ENST00000359359.2	chr6	36867201:36867409:36869996:36870210:36882059:36882211,	36869997	36870210	36870160	36870160	Frame_Shift_Del	A	-	p.E125fs
LIHC	TCGA-DD-A3A0-01	C6orf89	ENST00000510325.2	chr6	36867201:36867409:36870055:36870210:36882059:36882211,	36870056	36870210	36870160	36870160	Frame_Shift_Del	A	-	p.E125fs
LIHC	TCGA-DD-A3A0-01	SREK1IP1	ENST00000495198.2	chr5	64036962:64037027:64050141:64050189:64060871:64060948,64036962:64037027:64050141:64050189:64064331:64064446,	64050142	64050189	64050152	64050152	Frame_Shift_Del	T	-	p.C18fs
LIHC	TCGA-DD-A3A0-01	RUFY4	ENST00000374155.3	chr2	218937965:218938109:218938538:218938668:218939815:218940443,	218938539	218938668	218938584	218938584	Frame_Shift_Del	A	-	p.R192fs
LIHC	TCGA-DD-A3A0-01	RUFY4	ENST00000344321.7,ENST00000457754.2,ENST00000441828.2	chr2	218937965:218938109:218938538:218938608:218939815:218940443,	218938539	218938608	218938584	218938584	Frame_Shift_Del	A	-	p.R192fs
LIHC	TCGA-DD-A3A0-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1	chr14	94097146:94097254:94100866:94100983:94103561:94103645,	94100867	94100983	94100954	94100954	Frame_Shift_Del	C	-	p.A1758fs
LIHC	TCGA-DD-A3A0-01	ACTR6	ENST00000551652.1,ENST00000188312.2,ENST00000553038.1,ENST00000549977.1,ENST00000547458.1,ENST00000551617.1,ENST00000546902.1,ENST00000552376.1	chr12	100598717:100598835:100599453:100599522:100601440:100601564,	100599454	100599522	100599500	100599500	Frame_Shift_Del	T	-	p.L78fs
LIHC	TCGA-DD-A3A0-01	ACTR6	ENST00000551517.1,ENST00000548180.1,ENST00000552064.1	chr12	100598717:100598835:100599453:100599535:100601440:100601564,	100599454	100599535	100599500	100599500	Frame_Shift_Del	T	-	p.L78fs
LIHC	TCGA-DD-A3A0-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114348277:114348445:114355205:114355262:114356501:114356545,	114355206	114355262	114355220	114355220	Frame_Shift_Del	C	-	p.Q66fs
LIHC	TCGA-DD-A3A0-01	HCFC2	ENST00000229330.4,ENST00000552343.1,ENST00000550335.1,ENST00000544223.2	chr12	104492120:104492258:104495745:104495931:104496736:104497079,	104495746	104495931	104495863	104495863	Frame_Shift_Del	A	-	p.S665fs
LIHC	TCGA-DD-A3A0-01	TRMT13	ENST00000370141.2	chr1	100609624:100609699:100613449:100613882:100614180:100616053,	100613450	100613882	100613582	100613582	Frame_Shift_Del	A	-	p.E317fs
LIHC	TCGA-FV-A2QR-01	ZFAT	ENST00000517307.1,ENST00000520727.1,ENST00000429442.2,ENST00000377838.3,ENST00000523399.1,ENST00000520356.1,ENST00000518408.1,ENST00000520214.1,ENST00000523924.1	chr8	135533125:135533244:135545076:135545215:135577229:135577395,135533125:135533244:135545076:135545215:135577575:135577664,	135545077	135545215	135545117	135545124	Frame_Shift_Del	CACGTTGG	-	p.1023_1026del
LIHC	TCGA-FV-A2QR-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42054255:42054356:42057334:42057448:42059625:42059637,	42057335	42057448	42057392	42057407	Frame_Shift_Del	AGCTTGTTTACCCACC	-	p.527_532del
LIHC	TCGA-DD-AA3A-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437901	52437901	Frame_Shift_Del	C	-	p.K421fs
LIHC	TCGA-ED-A8O5-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357561	50357582	Frame_Shift_Del	TGCCATGACATACGGATAATCT	-	p.454_461del
LIHC	TCGA-DD-AAW0-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74283982:74284028:74285223:74285356:74286808:74286910,74284016:74284028:74285223:74285356:74285970:74286038,	74285224	74285356	74285302	74285311	Frame_Shift_Del	TTTTGTAGAG	-	p.577_580del
LIHC	TCGA-DD-AACY-01	RFTN1	ENST00000483671.1,ENST00000334133.4,ENST00000432519.1	chr3	16364882:16364964:16368279:16368383:16399438:16399554,	16368280	16368383	16368341	16368341	Frame_Shift_Del	G	-	p.L397fs
LIHC	TCGA-DD-AAE8-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577023	7577033	Frame_Shift_Del	CTTAGTGCTCC	-	p.302_306del
LIHC	TCGA-BC-A112-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118886846	118886847	Frame_Shift_Ins	-	A	p.P292fs
LIHC	TCGA-BC-A112-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842442	128842443	Frame_Shift_Ins	-	G	p.L1306fs
LIHC	TCGA-BC-A112-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673386	186673387	Frame_Shift_Ins	-	A	p.P6540fs
LIHC	TCGA-BC-A112-01	KAT6B	ENST00000287239.4	chr10	76732264:76732397:76735156:76736088:76737073:76737195,	76735157	76736088	76735587	76735588	Frame_Shift_Ins	-	C	p.T498fs
LIHC	TCGA-BC-A112-01	B4GALT3	ENST00000319769.5,ENST00000367998.1	chr1	161142016:161142121:161143394:161143517:161143648:161143839,	161143395	161143517	161143503	161143504	Frame_Shift_Ins	-	G	p.Q232fs
LIHC	TCGA-BC-A112-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094744	143094745	Frame_Shift_Ins	-	T	p.G378fs
LIHC	TCGA-BC-A112-01	RAD51	ENST00000532743.1,ENST00000525066.1,ENST00000557850.1,ENST00000267868.3,ENST00000382643.3	chr15	41021703:41021832:41022050:41022172:41023252:41023557,	41022051	41022172	41022163	41022164	Frame_Shift_Ins	-	A	p.S297fs
LIHC	TCGA-BC-A112-01	ATP6V1D	ENST00000556058.1,ENST00000555335.1,ENST00000555012.1,ENST00000554236.1,ENST00000216442.7	chr14	67817348:67817407:67819639:67819757:67826374:67826459,	67819640	67819757	67819690	67819691	Frame_Shift_Ins	-	T	p.S37fs
LIHC	TCGA-BC-A112-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420129	203420130	Frame_Shift_Ins	-	A	p.E581fs
LIHC	TCGA-BC-A112-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255075	9255076	Frame_Shift_Ins	-	A	p.E604fs
LIHC	TCGA-BC-A112-01	PSMD13	ENST00000525665.1	chr11	237037:237144:244040:244216:244425:244469,238997:239076:244040:244216:244425:244469,	244041	244216	244104	244105	Frame_Shift_Ins	-	G	p.F53fs
LIHC	TCGA-BC-A112-01	NAPA	ENST00000595227.1,ENST00000593905.1,ENST00000263354.3,ENST00000593761.1,ENST00000594001.1,ENST00000601208.1	chr19	47994100:47994113:47995271:47995376:47996217:47996302,	47995272	47995376	47995348	47995349	Frame_Shift_Ins	-	G	p.L197fs
LIHC	TCGA-BC-A112-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324037	27324038	Frame_Shift_Ins	-	T	p.K1114fs
LIHC	TCGA-BC-A112-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104502	168104503	Frame_Shift_Ins	-	A	p.K2200fs
LIHC	TCGA-BC-A112-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41348958:41349123:41352183:41352625:41353702:41353797,	41352184	41352625	41352494	41352495	Frame_Shift_Ins	-	G	p.A779fs
LIHC	TCGA-BC-A112-01	HELLS	ENST00000394044.1,ENST00000348459.5,ENST00000239026.6,ENST00000371332.4,ENST00000419900.1,ENST00000394045.1	chr10	96322447:96322484:96322568:96322633:96331144:96331186,	96322569	96322633	96322576	96322577	Frame_Shift_Ins	-	A	p.R126fs
LIHC	TCGA-BC-A112-01	WARS	ENST00000392882.2,ENST00000556645.1,ENST00000358655.4,ENST00000355338.2,ENST00000554950.1,ENST00000344102.5,ENST00000557135.1	chr14	100803398:100803539:100808734:100808908:100809611:100809724,	100808735	100808908	100808872	100808873	Frame_Shift_Ins	-	G	p.R326fs
LIHC	TCGA-BC-A112-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462267	5462268	Frame_Shift_Ins	-	T	p.K583fs
LIHC	TCGA-BC-A112-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000432218.1,ENST00000337006.4,ENST00000376083.3	chr9	88236116:88236200:88247576:88248289:88257741:88257858,	88247577	88248289	88247814	88247815	Frame_Shift_Ins	-	A	p.C553fs
LIHC	TCGA-BC-A112-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6423311:6423439:6423805:6423955:6424374:6424438,	6423806	6423955	6423899	6423900	Frame_Shift_Ins	-	G	p.P387fs
LIHC	TCGA-CC-A5UC-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396352	396352	Frame_Shift_Del	C	-	p.S225fs
LIHC	TCGA-CC-A5UC-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396352	396353	Frame_Shift_Del	CT	-	p.225_225del
LIHC	TCGA-CC-5259-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467120	58467121	Frame_Shift_Ins	-	T	p.N763fs
LIHC	TCGA-CC-5259-01	PTH2R	ENST00000413482.1,ENST00000272847.2	chr2	209324619:209324686:209345794:209345889:209353736:209353875,	209345795	209345889	209345847	209345847	Frame_Shift_Del	G	-	p.W345fs
LIHC	TCGA-CC-5259-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603106	111603106	Frame_Shift_Del	C	-	p.T88fs
LIHC	TCGA-CC-5259-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603108	111603109	Frame_Shift_Del	CT	-	p.88_89del
LIHC	TCGA-G3-AAV0-01	MRPL35	ENST00000409180.1,ENST00000254644.8,ENST00000337109.4	chr2	86433228:86433418:86434305:86434450:86437602:86437736,	86434306	86434450	86434440	86434440	Frame_Shift_Del	T	-	p.V123X
LIHC	TCGA-G3-AAV0-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27874319	27874361	Frame_Shift_Del	GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG	-	p.1423_1437del
LIHC	TCGA-G3-AAV0-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115261233:115261366:115262199:115262363:115263159:115263338,	115262200	115262363	115262274	115262275	Frame_Shift_Ins	-	G	p.G760fs
LIHC	TCGA-G3-AAV0-01	AOAH	ENST00000535891.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36561644:36561721:36570023:36570120:36571752:36571812,	36570024	36570120	36570105	36570124	Frame_Shift_Del	AGAGTTGCTCTGCTCTCTGA	-	p.476_481del
LIHC	TCGA-BC-A110-01	COL17A1	ENST00000369733.3,ENST00000483876.1,ENST00000393211.3,ENST00000353479.5	chr10	105836058:105836187:105837179:105837284:105838299:105838344,	105837180	105837284	105837253	105837254	Frame_Shift_Ins	-	G	p.T43fs
LIHC	TCGA-BC-A110-01	SUMF2	ENST00000413952.2,ENST00000434526.2,ENST00000395436.2,ENST00000452216.1,ENST00000275607.9,ENST00000413756.1,ENST00000342190.6,ENST00000451338.1	chr7	56141866:56141911:56144526:56144582:56145794:56145879,56140701:56140804:56144526:56144582:56145794:56145879,56136174:56136331:56144526:56144582:56145794:56145879,56142278:56142429:56144526:56144582:56145794:56145879,	56144527	56144582	56144554	56144555	Frame_Shift_Ins	-	C	p.F207fs
LIHC	TCGA-BC-A110-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1,ENST00000382778.4	chr13	21217593:21217744:21218981:21219097:21228014:21228067,	21218982	21219097	21219024	21219025	Frame_Shift_Ins	-	T	p.L635fs
LIHC	TCGA-EP-A3JL-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000509063.1,ENST00000441319.1	chr4	74272367:74272478:74274310:74274522:74275071:74275204,	74274311	74274522	74274387	74274388	Frame_Shift_Ins	-	A	p.A116fs
LIHC	TCGA-KR-A7K0-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728375	50728379	Frame_Shift_Del	GGTGG	-	p.212_214del
LIHC	TCGA-KR-A7K0-01	CLCN3	ENST00000515420.1	chr4	170616781:170616843:170618339:170618430:170618511:170618885,	170618340	170618430	170618424	170618424	Frame_Shift_Del	C	-	p.N367fs
LIHC	TCGA-KR-A7K0-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728381	50728387	Frame_Shift_Del	CAGGTAG	-	p.210_212del
LIHC	TCGA-KR-A7K0-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728375	50728387	Frame_Shift_Del	GGTGGACAGGTAG	-	p.210_214del
LIHC	TCGA-DD-A4NI-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229593907:229594043:229596357:229596516:229599289:229599423,	229596358	229596516	229596501	229596502	Frame_Shift_Ins	-	A	p.L901fs
LIHC	TCGA-DD-AAEB-01	CYP2C8	ENST00000490994.2,ENST00000533320.1,ENST00000526814.1,ENST00000525991.1,ENST00000371270.3,ENST00000535898.1	chr10	96796938:96797066:96798653:96798795:96802646:96802828,	96798654	96798795	96798766	96798766	Frame_Shift_Del	G	-	p.V394fs
LIHC	TCGA-CC-A7IF-01	RPS4Y1	ENST00000430575.1,ENST00000250784.8	chrY	2713686:2713784:2722640:2722812:2733128:2733286,	2722641	2722812	2722723	2722724	Frame_Shift_Ins	-	CT	p.R148fs
LIHC	TCGA-CC-A7IF-01	STX10	ENST00000593126.1,ENST00000589083.1,ENST00000591197.1,ENST00000587318.1,ENST00000242770.5,ENST00000588848.1,ENST00000440593.3,ENST00000587230.1	chr19	13256116:13256209:13259842:13259905:13260312:13260407,	13259843	13259905	13259885	13259886	Frame_Shift_Ins	-	A	p.V107fs
LIHC	TCGA-BC-A10Z-01	AP3M2	ENST00000517865.1,ENST00000521280.1,ENST00000396926.3,ENST00000174653.3,ENST00000517922.1,ENST00000530375.1,ENST00000521899.1,ENST00000518421.1	chr8	42019798:42019936:42022588:42022674:42022944:42023078,	42022589	42022674	42022613	42022614	Frame_Shift_Ins	-	G	p.Q203fs
LIHC	TCGA-BC-A10Z-01	IYD	ENST00000392255.3,ENST00000392256.2,ENST00000500320.3,ENST00000425615.3,ENST00000367335.3,ENST00000229447.5,ENST00000344419.3	chr6	150710487:150710679:150713480:150713640:150715234:150715391,	150713481	150713640	150713484	150713493	Frame_Shift_Del	CAGCCCCGAG	-	p.125_128del
LIHC	TCGA-BC-A10Z-01	SPINK5	ENST00000398454.1,ENST00000256084.7,ENST00000359874.3	chr5	147499857:147499954:147503395:147503523:147504327:147504400,	147503396	147503523	147503432	147503432	Frame_Shift_Del	G	-	p.N858fs
LIHC	TCGA-BC-A10Z-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991412	21991413	Frame_Shift_Ins	-	C	p.A817fs
LIHC	TCGA-BC-A10Z-01	ADAM12	ENST00000368679.4	chr10	127705666:127705908:127708263:127708394:127724714:127724894,	127708264	127708394	127708372	127708372	Frame_Shift_Del	G	-	p.P854fs
LIHC	TCGA-BC-A10Z-01	ALK	ENST00000389048.3	chr2	29436849:29436947:29443571:29443701:29445209:29445274,	29443572	29443701	29443612	29443612	Frame_Shift_Del	C	-	p.G1202fs
LIHC	TCGA-XR-A8TC-01	HADHA	ENST00000380649.3,ENST00000492433.1	chr2	26415178:26415293:26416445:26416641:26417438:26417507,	26416446	26416641	26416510	26416510	Frame_Shift_Del	A	-	p.G608fs
LIHC	TCGA-DD-A119-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131670854	131670855	Frame_Shift_Del	CT	-	p.470_471del
LIHC	TCGA-2Y-A9H6-01	RAD51B	ENST00000471583.1,ENST00000487861.1,ENST00000487270.1,ENST00000390683.3,ENST00000488612.1	chr14	68301796:68301913:68331719:68331856:68352585:68352705,	68331720	68331856	68331792	68331802	Frame_Shift_Del	AACATGGGAGG	-	p.129_133del
LIHC	TCGA-RC-A7SB-01	CAPN3	ENST00000397204.4	chr15	42695938:42695975:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42701500:42701578,	42698124	42698141	42698136	42698151	Frame_Shift_Del	ACCAAGGTAGGTGTGT	-	p.598_600del
LIHC	TCGA-RC-A7SB-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491784	107491817	Frame_Shift_Del	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	-	p.405_416del
LIHC	TCGA-DD-A4NS-01	CD46	ENST00000441839.2,ENST00000358170.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1,ENST00000367047.1	chr1	207932983:207933069:207934593:207934791:207940357:207940462,	207934594	207934791	207934716	207934716	Frame_Shift_Del	T	-	p.P199fs
LIHC	TCGA-DD-AACL-01	GRM3	ENST00000394720.2,ENST00000439827.1	chr7	86274157:86274188:86394321:86394929:86415576:86416007,	86394322	86394929	86394697	86394698	Frame_Shift_Ins	-	C	p.I79fs
LIHC	TCGA-BC-A3KF-01	HNF4G	ENST00000354370.1	chr8	76402323:76402443:76456045:76456214:76459821:76459916,	76456046	76456214	76456117	76456118	Frame_Shift_Ins	-	ACAGAGC	p.D54fs
LIHC	TCGA-CC-A7IH-01	NCSTN	ENST00000421914.1,ENST00000535857.1,ENST00000437169.1	chr1	160313182:160313271:160314511:160314616:160318788:160318912,	160314512	160314616	160314603	160314606	Frame_Shift_Del	GATT	-	p.59_60del
LIHC	TCGA-CC-A7IH-01	ACSM5	ENST00000331849.4	chr16	20430549:20430757:20432579:20432723:20435237:20435391,	20432580	20432723	20432662	20432663	Frame_Shift_Ins	-	C	p.A236fs
LIHC	TCGA-CC-A7IH-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724768	112724768	Frame_Shift_Del	A	-	p.L217fs
LIHC	TCGA-CC-A7IH-01	MEN1	ENST00000377316.2,ENST00000337652.1,ENST00000377326.3,ENST00000377313.1,ENST00000443283.1,ENST00000394374.2,ENST00000377321.1,ENST00000312049.6,ENST00000315422.4,ENST00000394376.1	chr11	64573106:64573242:64573703:64573840:64574482:64574570,	64573704	64573840	64573793	64573793	Frame_Shift_Del	G	-	p.Y326fs
LIHC	TCGA-WX-AA47-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67938119	67938126	Frame_Shift_Del	TGGGCCCA	-	p.454_457del
LIHC	TCGA-DD-A39Y-01	OGT	ENST00000488174.1,ENST00000373719.3,ENST00000373701.3	chrX	70779437:70779527:70781624:70781750:70782696:70782867,	70781625	70781750	70781722	70781722	Frame_Shift_Del	T	-	p.L650fs
LIHC	TCGA-DD-A39Y-01	ELF5	ENST00000528709.1	chr11	34503977:34504046:34511555:34511606:34515025:34515259,34503977:34504046:34511555:34511606:34527175:34527300,	34511556	34511606	34511593	34511593	Frame_Shift_Del	A	-	p.N134fs
LIHC	TCGA-DD-A39Y-01	SELENBP1	ENST00000447402.3,ENST00000424475.1,ENST00000493560.1,ENST00000470345.1,ENST00000423070.1,ENST00000427977.2,ENST00000368868.5,ENST00000426705.2,ENST00000458566.1,ENST00000443708.1,ENST00000463664.1,ENST00000435071.1,ENST00000474352.1	chr1	151338750:151338929:151339197:151339380:151340674:151340795,	151339198	151339380	151339214	151339214	Frame_Shift_Del	G	-	p.A259fs
LIHC	TCGA-DD-A39Y-01	CAAP1	ENST00000333916.5,ENST00000517946.1,ENST00000535437.1	chr9	26884807:26884883:26886101:26886186:26887310:26887476,	26886102	26886186	26886160	26886160	Frame_Shift_Del	T	-	p.L178fs
LIHC	TCGA-DD-A39Y-01	CLSPN	ENST00000520551.1,ENST00000373220.3,ENST00000318121.3,ENST00000251195.5	chr1	36227598:36227671:36228004:36228082:36228760:36228922,	36228005	36228082	36228077	36228077	Frame_Shift_Del	T	-	p.E251fs
LIHC	TCGA-DD-A39Y-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618994	618994	Frame_Shift_Del	G	-	p.P522fs
LIHC	TCGA-DD-A39Y-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141203	167141203	Frame_Shift_Del	A	-	p.G579fs
LIHC	TCGA-DD-A39Y-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141203	167141203	Frame_Shift_Del	A	-	p.G579fs
LIHC	TCGA-DD-A39Y-01	NFYC	ENST00000425457.2,ENST00000456393.2,ENST00000447388.3,ENST00000427410.2	chr1	41157509:41157539:41204507:41204620:41213205:41213256,	41204508	41204620	41204559	41204559	Frame_Shift_Del	C	-	p.A15fs
LIHC	TCGA-DD-A39Y-01	PKN2	ENST00000316005.7,ENST00000370505.3,ENST00000370521.3,ENST00000544045.1,ENST00000436111.1	chr1	89251786:89251896:89270073:89270217:89270528:89270577,	89270074	89270217	89270151	89270151	Frame_Shift_Del	T	-	p.D453fs
LIHC	TCGA-DD-A39Y-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76370772	76370772	Frame_Shift_Del	C	-	p.G622fs
LIHC	TCGA-DD-A39Y-01	NHLRC2	ENST00000369301.3	chr10	115644009:115644139:115657868:115657968:115661424:115661656,	115657869	115657968	115657964	115657964	Frame_Shift_Del	A	-	p.K378fs
LIHC	TCGA-DD-A39Y-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189591	75189591	Frame_Shift_Del	A	-	p.E145fs
LIHC	TCGA-DD-A39Y-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30735727	30735727	Frame_Shift_Del	A	-	p.Q1661fs
LIHC	TCGA-DD-A39Y-01	CPSF1	ENST00000531727.1,ENST00000349769.3,ENST00000526271.1	chr8	145618913:145619011:145619097:145619253:145619327:145619375,	145619098	145619253	145619169	145619169	Frame_Shift_Del	G	-	p.P1315fs
LIHC	TCGA-DD-A39Y-01	MEAF6	ENST00000373074.1,ENST00000296214.5	chr1	37959534:37959708:37961485:37961519:37967404:37967597,	37961486	37961519	37961495	37961495	Frame_Shift_Del	T	-	p.P197fs
LIHC	TCGA-DD-A39Y-01	ANGEL2	ENST00000366962.3,ENST00000460337.1	chr1	213180470:213180540:213181551:213181808:213186434:213186760,	213181552	213181808	213181561	213181561	Frame_Shift_Del	A	-	p.D212fs
LIHC	TCGA-DD-A39Y-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73957752	73957752	Frame_Shift_Del	T	-	p.T1865fs
LIHC	TCGA-DD-A39Y-01	STYX	ENST00000442123.2,ENST00000354586.4	chr14	53211569:53211602:53213143:53213197:53217400:53217498,	53213144	53213197	53213189	53213189	Frame_Shift_Del	A	-	p.M45fs
LIHC	TCGA-DD-A39Y-01	KNTC1	ENST00000450485.2	chr12	123011794:123011898:123014568:123014739:123019210:123019331,	123014569	123014739	123014679	123014679	Frame_Shift_Del	A	-	p.R23fs
LIHC	TCGA-DD-A39Y-01	SMC1A	ENST00000322213.4	chrX	53407540:53407651:53407938:53408008:53409152:53409304,	53407939	53408008	53407993	53407993	Frame_Shift_Del	G	-	p.F1152fs
LIHC	TCGA-DD-A39Y-01	DLGAP5	ENST00000395425.2,ENST00000247191.2	chr14	55621334:55621524:55625239:55625459:55629688:55629793,	55625240	55625459	55625371	55625371	Frame_Shift_Del	T	-	p.N581fs
LIHC	TCGA-DD-A39Y-01	ITGAD	ENST00000389202.2,ENST00000444228.2	chr16	31409115:31409230:31413435:31413566:31414820:31414966,	31413436	31413566	31413551	31413551	Frame_Shift_Del	G	-	p.E181fs
LIHC	TCGA-DD-A39Y-01	ACPP	ENST00000351273.7	chr3	132071645:132071667:132075529:132075699:132086547:132087142,	132075530	132075699	132075605	132075605	Frame_Shift_Del	C	-	p.S348fs
LIHC	TCGA-DD-A39Y-01	KRT16	ENST00000301653.4	chr17	39766217:39766281:39766441:39766488:39766582:39766626,	39766442	39766488	39766478	39766478	Frame_Shift_Del	G	-	p.Q431fs
LIHC	TCGA-DD-A39Y-01	PLCB4	ENST00000482123.1,ENST00000473151.1	chr20	9351860:9351942:9352949:9353050:9360700:9360809,	9352950	9353050	9352974	9352974	Frame_Shift_Del	T	-	p.A203fs
LIHC	TCGA-DD-A39Y-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000477870.1,ENST00000483175.1,ENST00000373272.2	chr20	39797718:39797815:39798096:39798166:39798751:39798909,	39798097	39798166	39798114	39798114	Frame_Shift_Del	C	-	p.S866fs
LIHC	TCGA-DD-A39Y-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073055	46073055	Frame_Shift_Del	A	-	p.A157fs
LIHC	TCGA-DD-A39Y-01	TARS2	ENST00000438568.2,ENST00000369064.3,ENST00000462578.1,ENST00000467982.2	chr1	150464886:150464965:150468957:150469104:150469285:150469384,	150468958	150469104	150469064	150469064	Frame_Shift_Del	G	-	p.R294fs
LIHC	TCGA-DD-A39Y-01	MSI1	ENST00000257552.2	chr12	120783372:120783435:120783937:120784125:120785248:120785317,	120783938	120784125	120784098	120784098	Frame_Shift_Del	G	-	p.P296fs
LIHC	TCGA-DD-A39Y-01	TCP11	ENST00000444780.2,ENST00000412155.2,ENST00000507706.1,ENST00000418521.2,ENST00000512012.1,ENST00000373974.4,ENST00000311875.5,ENST00000504758.1,ENST00000505911.1,ENST00000505400.1	chr6	35090085:35090114:35096838:35096959:35108981:35109030,35090085:35090114:35096838:35096959:35108523:35108661,35090085:35090114:35096838:35096959:35107796:35108002,35090085:35090114:35096838:35096959:35103883:35103980,	35096839	35096959	35096919	35096919	Frame_Shift_Del	A	-	p.W106fs
LIHC	TCGA-DD-A39Y-01	SLC43A3	ENST00000533235.1,ENST00000529494.1,ENST00000395123.2,ENST00000529112.1,ENST00000529554.1,ENST00000528098.1,ENST00000352187.1,ENST00000525474.1,ENST00000530232.1,ENST00000530005.1,ENST00000533245.1,ENST00000395124.1	chr11	57191454:57191501:57193013:57193143:57193461:57193825,	57193014	57193143	57193097	57193097	Frame_Shift_Del	C	-	p.S78fs
LIHC	TCGA-DD-A39Y-01	SLC43A3	ENST00000528187.1,ENST00000533524.1	chr11	57191454:57191501:57193013:57193182:57193461:57193825,	57193014	57193182	57193097	57193097	Frame_Shift_Del	C	-	p.S78fs
LIHC	TCGA-DD-A39Y-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897154	36897154	Frame_Shift_Del	A	-	p.L1310X
LIHC	TCGA-DD-A39Y-01	CDCA3	ENST00000535406.1,ENST00000538862.2,ENST00000229265.6	chr12	6958317:6958362:6958486:6958593:6958728:6958828,	6958487	6958593	6958537	6958537	Frame_Shift_Del	G	-	p.L201fs
LIHC	TCGA-DD-A39Y-01	CDCA3	ENST00000535871.1	chr12	6958317:6958362:6958486:6958577:6958728:6958828,	6958487	6958577	6958537	6958537	Frame_Shift_Del	G	-	p.L201fs
LIHC	TCGA-DD-A39Y-01	GUSB	ENST00000304895.4,ENST00000447929.1,ENST00000466883.1,ENST00000345660.6,ENST00000421103.1,ENST00000430730.1	chr7	65425687:65426050:65429309:65429445:65432717:65432894,	65429310	65429445	65429409	65429409	Frame_Shift_Del	T	-	p.S564fs
LIHC	TCGA-DD-A39Y-01	TSTD2	ENST00000354801.2,ENST00000341170.4	chr9	100387962:100388279:100389679:100389894:100395524:100395583,	100389680	100389894	100389705	100389705	Frame_Shift_Del	T	-	p.K47fs
LIHC	TCGA-DD-A39Y-01	TSTD2	ENST00000375172.2	chr9	100387962:100388279:100389587:100389894:100395524:100395583,	100389588	100389894	100389705	100389705	Frame_Shift_Del	T	-	p.K47fs
LIHC	TCGA-DD-A39Y-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108857	14108857	Frame_Shift_Del	A	-	p.I1522fs
LIHC	TCGA-DD-A39Y-01	KDM4C	ENST00000535193.1,ENST00000489243.1,ENST00000438023.1,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3,ENST00000401787.3	chr9	6792971:6793132:6805598:6805774:6814630:6814745,	6805599	6805774	6805725	6805725	Frame_Shift_Del	A	-	p.Q112fs
LIHC	TCGA-DD-A39Y-01	CASC4	ENST00000360824.3,ENST00000345795.2,ENST00000558847.1	chr15	44671887:44671986:44673003:44673174:44705533:44705634,	44673004	44673174	44673029	44673029	Frame_Shift_Del	C	-	p.N309fs
LIHC	TCGA-DD-A39Y-01	NCAPH2	ENST00000395701.3,ENST00000523045.1,ENST00000299821.11,ENST00000420993.2	chr22	50957077:50957161:50957618:50957749:50959393:50959465,	50957619	50957749	50957703	50957703	Frame_Shift_Del	C	-	p.A272fs
LIHC	TCGA-DD-A39Y-01	RC3H2	ENST00000335387.5,ENST00000373665.2,ENST00000423239.2,ENST00000357244.2,ENST00000373670.1,ENST00000498479.1	chr9	125645482:125645658:125652590:125652824:125655187:125655305,	125652591	125652824	125652757	125652757	Frame_Shift_Del	G	-	p.C140fs
LIHC	TCGA-DD-A39Y-01	ZFAND5	ENST00000376960.4,ENST00000237937.3,ENST00000376956.3,ENST00000488164.1,ENST00000376962.5,ENST00000471197.1,ENST00000343431.2	chr9	74971861:74971972:74974333:74974437:74975025:74975131,	74974334	74974437	74974352	74974352	Frame_Shift_Del	T	-	p.T117fs
LIHC	TCGA-DD-A39Y-01	CREB3L4	ENST00000449724.1,ENST00000368603.1,ENST00000271889.4,ENST00000368607.3,ENST00000368600.3,ENST00000368601.1	chr1	153940997:153941175:153941809:153941931:153945219:153945244,153941405:153941652:153941809:153941931:153945219:153945244,	153941810	153941931	153941909	153941909	Frame_Shift_Del	C	-	p.A174fs
LIHC	TCGA-DD-A39Y-01	CREB3L4	ENST00000492729.1	chr1	153941000:153941115:153941405:153941931:153945219:153945244,	153941406	153941931	153941909	153941909	Frame_Shift_Del	C	-	p.A174fs
LIHC	TCGA-DD-A39Y-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93247690:93247730:93251050:93251116:93251206:93251261,	93251051	93251116	93251072	93251072	Frame_Shift_Del	T	-	p.Y116fs
LIHC	TCGA-DD-A39Y-01	TRMT10B	ENST00000540616.1	chr9	37761899:37762114:37762539:37762682:37763625:37763750,	37762540	37762682	37762657	37762657	Frame_Shift_Del	A	-	p.R90fs
LIHC	TCGA-DD-A39Y-01	TRMT10B	ENST00000537911.1,ENST00000488673.2,ENST00000297994.3,ENST00000537016.1	chr9	37761899:37762114:37762573:37762682:37763625:37763750,	37762574	37762682	37762657	37762657	Frame_Shift_Del	A	-	p.R90fs
LIHC	TCGA-DD-A39Y-01	COL9A3	ENST00000343916.3,ENST00000452372.1,ENST00000477612.1,ENST00000489045.1	chr20	61449869:61449905:61450573:61450645:61451280:61451334,	61450574	61450645	61450582	61450582	Frame_Shift_Del	G	-	p.K64fs
LIHC	TCGA-DD-A39Y-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000548440.1,ENST00000355831.2,ENST00000392783.2	chr2	160181321:160181465:160182163:160182429:160189050:160189197,	160182164	160182429	160182380	160182380	Frame_Shift_Del	T	-	p.K1998fs
LIHC	TCGA-DD-A39Y-01	ABL2	ENST00000392043.3,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3	chr1	179084012:179084165:179086466:179086651:179087721:179087899,	179086467	179086651	179086622	179086622	Frame_Shift_Del	C	-	p.G418fs
LIHC	TCGA-DD-A39Y-01	RPS3A	ENST00000512690.1	chr4	152024210:152024231:152025336:152025438:152025623:152025642,	152025337	152025438	152025347	152025347	Frame_Shift_Del	A	-	p.G194fs
LIHC	TCGA-DD-A39Y-01	RPS3A	ENST00000507327.1,ENST00000510993.1,ENST00000514682.1,ENST00000274065.4,ENST00000509736.1,ENST00000515792.1,ENST00000506126.1	chr4	152024210:152024231:152025328:152025438:152025623:152025642,	152025329	152025438	152025347	152025347	Frame_Shift_Del	A	-	p.G194fs
LIHC	TCGA-DD-A39Y-01	RASAL1	ENST00000548972.1,ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000546727.1,ENST00000551051.1,ENST00000418411.2	chr12	113553004:113553069:113553439:113553593:113553738:113553856,	113553440	113553593	113553545	113553545	Frame_Shift_Del	C	-	p.D300fs
LIHC	TCGA-DD-A39Y-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35168135:35168207:35174702:35174840:35176725:35176935,	35174703	35174840	35174733	35174733	Frame_Shift_Del	T	-	p.R1046fs
LIHC	TCGA-DD-A39Y-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
LIHC	TCGA-DD-A39Y-01	VCAM1	ENST00000370119.4,ENST00000347652.2,ENST00000294728.2	chr1	101196753:101197074:101197973:101198240:101200057:101200324,	101197974	101198240	101197977	101197977	Frame_Shift_Del	C	-	p.A510fs
LIHC	TCGA-DD-A39Y-01	AMFR	ENST00000290649.5,ENST00000565445.1,ENST00000563664.1	chr16	56439115:56439156:56441875:56442028:56443335:56443500,	56441876	56442028	56441911	56441911	Frame_Shift_Del	G	-	p.H211fs
LIHC	TCGA-DD-A39Y-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70806693	70806693	Frame_Shift_Del	A	-	p.G1258fs
LIHC	TCGA-DD-A39Y-01	ZRANB1	ENST00000359653.4	chr10	126662768:126662967:126670277:126670398:126671743:126671873,	126670278	126670398	126670335	126670335	Frame_Shift_Del	T	-	p.H495fs
LIHC	TCGA-DD-A39Y-01	ADCY10	ENST00000367848.1,ENST00000485964.1,ENST00000545172.1,ENST00000367851.4	chr1	167778914:167779076:167779961:167780150:167787309:167787505,	167779962	167780150	167780125	167780125	Frame_Shift_Del	T	-	p.N1503fs
LIHC	TCGA-DD-A39Y-01	NUP85	ENST00000583877.1	chr17	73214387:73214401:73221218:73221332:73221436:73221559,	73221219	73221332	73221299	73221299	Frame_Shift_Del	G	-	p.M233fs
LIHC	TCGA-DD-A39Y-01	NUP85	ENST00000581104.1,ENST00000447371.2	chr17	73214387:73214401:73221197:73221332:73221436:73221559,73211895:73211918:73221197:73221332:73221436:73221559,	73221198	73221332	73221299	73221299	Frame_Shift_Del	G	-	p.M233fs
LIHC	TCGA-DD-A39Y-01	TRAPPC8	ENST00000578886.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29426713:29426780:29429528:29429702:29432408:29432467,	29429529	29429702	29429604	29429604	Frame_Shift_Del	T	-	p.Q1221fs
LIHC	TCGA-DD-A39Y-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309403	46309403	Frame_Shift_Del	C	-	p.L556fs
LIHC	TCGA-DD-A39Y-01	ANKRD18B	ENST00000474881.2,ENST00000484634.1	chr9	33534367:33534505:33536875:33536943:33539446:33539500,	33536876	33536943	33536901	33536901	Frame_Shift_Del	A	-	p.H255fs
LIHC	TCGA-DD-A39Y-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2,ENST00000433782.2	chr2	190561026:190561095:190569748:190569950:190571663:190571868,	190569749	190569950	190569839	190569839	Frame_Shift_Del	A	-	p.E600fs
LIHC	TCGA-DD-A39Y-01	HTATIP2	ENST00000443524.2,ENST00000419348.2,ENST00000421577.2,ENST00000451739.2	chr11	20388719:20388827:20398125:20398263:20403723:20403785,	20398126	20398263	20398242	20398242	Frame_Shift_Del	T	-	p.N174fs
LIHC	TCGA-DD-A39Y-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189851784:189851865:189852806:189852860:189853315:189853369,	189852807	189852860	189852856	189852856	Frame_Shift_Del	C	-	p.S193fs
LIHC	TCGA-DD-A39Y-01	CAV2	ENST00000484871.1,ENST00000222693.4,ENST00000498493.1	chr7	116139894:116139985:116140313:116140501:116146024:116146083,	116140314	116140501	116140387	116140387	Frame_Shift_Del	C	-	p.A75fs
LIHC	TCGA-DD-A39Y-01	CCDC47	ENST00000403162.3,ENST00000225726.5,ENST00000582331.2,ENST00000582252.1	chr17	61830139:61830159:61831792:61831878:61833599:61833710,	61831793	61831878	61831827	61831827	Frame_Shift_Del	A	-	p.S334X
LIHC	TCGA-DD-A39Y-01	HDAC6	ENST00000441703.1,ENST00000462730.1	chrX	48660516:48660549:48661069:48661192:48661277:48661337,48660598:48660642:48661069:48661192:48661277:48661337,48660397:48660429:48661069:48661192:48661277:48661406,48660613:48660679:48661069:48661192:48661277:48661337,	48661070	48661192	48661166	48661166	Frame_Shift_Del	C	-	p.S22fs
LIHC	TCGA-DD-A39Y-01	PTTG1	ENST00000393964.1,ENST00000519287.1,ENST00000520452.1,ENST00000352433.5	chr5	159849715:159849900:159851243:159851337:159854721:159854880,	159851244	159851337	159851311	159851311	Frame_Shift_Del	A	-	p.E115fs
LIHC	TCGA-DD-A39Y-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000577880.1	chr18	2718312:2718432:2722516:2722661:2724896:2724993,	2722517	2722661	2722560	2722560	Frame_Shift_Del	T	-	p.P834fs
LIHC	TCGA-DD-A39Y-01	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000373382.1,ENST00000263559.6	chr10	70925797:70925866:70928244:70928387:70930911:70931016,	70928245	70928387	70928313	70928313	Frame_Shift_Del	A	-	p.N265fs
LIHC	TCGA-DD-A39Y-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37232774:37232902:37234192:37234447:37235753:37235991,	37234193	37234447	37234290	37234290	Frame_Shift_Del	T	-	p.R1561fs
LIHC	TCGA-DD-A39Y-01	KIAA2026	ENST00000540714.1,ENST00000399933.3	chr9	5929043:5929159:5954015:5954095:5968018:5968081,5944870:5944960:5954015:5954095:5968018:5968081,	5954016	5954095	5954073	5954073	Frame_Shift_Del	T	-	p.A746fs
LIHC	TCGA-DD-A39Y-01	PABPC4	ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000437136.1,ENST00000372862.3	chr1	40027744:40027875:40027994:40028088:40029285:40029401,	40027995	40028088	40028016	40028016	Frame_Shift_Del	G	-	p.Q581fs
LIHC	TCGA-DD-A39Y-01	PABPC4	ENST00000421687.2	chr1	40027744:40027875:40027994:40028052:40029285:40029401,	40027995	40028052	40028016	40028016	Frame_Shift_Del	G	-	p.Q581fs
LIHC	TCGA-DD-A39Y-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27301810:27302039:27303422:27303640:27306430:27306721,	27303423	27303640	27303455	27303455	Frame_Shift_Del	T	-	p.V1565fs
LIHC	TCGA-DD-A39Y-01	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49065721:49065853:49066088:49066219:49066400:49066502,	49066089	49066219	49066137	49066137	Frame_Shift_Del	T	-	p.G1603fs
LIHC	TCGA-DD-A39Y-01	VPS29	ENST00000548259.1	chr12	110930800:110931036:110933816:110934008:110937339:110937351,110930800:110931036:110933816:110934008:110939853:110939883,	110933817	110934008	110933940	110933940	Frame_Shift_Del	T	-	p.L29fs
LIHC	TCGA-DD-A39Y-01	RBPMS2	ENST00000560606.1,ENST00000300069.4	chr15	65033371:65033441:65040617:65040766:65041198:65041349,	65040618	65040766	65040685	65040685	Frame_Shift_Del	G	-	p.P167fs
LIHC	TCGA-DD-A39Y-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875231	27875231	Frame_Shift_Del	A	-	p.D1133fs
LIHC	TCGA-DD-A39Y-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90049043	90049043	Frame_Shift_Del	T	-	p.Y278fs
LIHC	TCGA-DD-A39Y-01	ADAMTS12	ENST00000515401.1,ENST00000352040.3	chr5	33751508:33751653:33881223:33881585:33891834:33892046,	33881224	33881585	33881513	33881513	Frame_Shift_Del	A	-	p.L67fs
LIHC	TCGA-DD-A39Y-01	PNPT1	ENST00000415374.1,ENST00000447944.2,ENST00000429805.1	chr2	55906816:55906930:55907846:55907894:55907989:55908053,	55907847	55907894	55907883	55907883	Frame_Shift_Del	G	-	p.L177fs
LIHC	TCGA-DD-A39Y-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43414014	43414014	Frame_Shift_Del	T	-	p.N64fs
LIHC	TCGA-DD-A39Y-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77243737:77244227:77244728:77245454:77253974:77254181,	77244729	77245454	77245318	77245318	Frame_Shift_Del	A	-	p.S400X
LIHC	TCGA-DD-A39Y-01	RABL2B	ENST00000436958.1	chr22	51207468:51207552:51207852:51207980:51214199:51214261,	51207853	51207980	51207957	51207957	Frame_Shift_Del	T	-	p.S145fs
LIHC	TCGA-DD-A39Y-01	RABL2B	ENST00000425098.1	chr22	51207468:51207552:51207882:51207980:51214199:51214261,	51207883	51207980	51207957	51207957	Frame_Shift_Del	T	-	p.S145fs
LIHC	TCGA-DD-A39Y-01	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21935342:21935429:21936067:21936139:21936612:21936717,	21936068	21936139	21936094	21936094	Frame_Shift_Del	G	-	p.L413fs
LIHC	TCGA-DD-A39Y-01	RUFY1	ENST00000377001.2,ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000393448.2,ENST00000502434.1	chr5	179021866:179021964:179023562:179023682:179025692:179025822,	179023563	179023682	179023590	179023590	Frame_Shift_Del	G	-	p.Q513fs
LIHC	TCGA-DD-A39Y-01	MOCOS	ENST00000261326.5	chr18	33795478:33795940:33800017:33800180:33828884:33828963,	33800018	33800180	33800091	33800091	Frame_Shift_Del	T	-	p.V624fs
LIHC	TCGA-DD-A39Y-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124598	76124598	Frame_Shift_Del	T	-	p.S31fs
LIHC	TCGA-DD-A39Y-01	BIRC2	ENST00000532672.1	chr11	102219328:102219495:102220608:102221480:102221574:102221674,	102220609	102221480	102221110	102221110	Frame_Shift_Del	C	-	p.N175fs
LIHC	TCGA-DD-A39Y-01	BIRC2	ENST00000227758.2	chr11	102217999:102218107:102219328:102221480:102221574:102221674,	102219329	102221480	102221110	102221110	Frame_Shift_Del	C	-	p.N175fs
LIHC	TCGA-DD-A39Y-01	BIRC2	ENST00000530675.1	chr11	102217999:102218107:102220731:102221480:102221574:102221674,	102220732	102221480	102221110	102221110	Frame_Shift_Del	C	-	p.N175fs
LIHC	TCGA-DD-A39Y-01	CHRNB4	ENST00000261751.3	chr15	78916749:78917633:78921308:78922287:78923417:78923527,	78921309	78922287	78921420	78921420	Frame_Shift_Del	G	-	p.R410fs
LIHC	TCGA-DD-A39Y-01	RORA	ENST00000309157.4,ENST00000261523.5,ENST00000335670.6,ENST00000449337.2	chr15	60797804:60797828:60803424:60803820:60806814:60806956,	60803425	60803820	60803793	60803793	Frame_Shift_Del	T	-	p.K184fs
LIHC	TCGA-DD-A39Y-01	PPIL6	ENST00000440797.2,ENST00000447468.3	chr6	109752493:109752548:109757306:109757402:109761658:109761707,	109757307	109757402	109757309	109757309	Frame_Shift_Del	T	-	p.R77fs
LIHC	TCGA-DD-A39Y-01	PLXNC1	ENST00000545312.1,ENST00000258526.4,ENST00000547057.1	chr12	94691091:94691199:94692407:94692571:94694685:94694833,	94692408	94692571	94692436	94692436	Frame_Shift_Del	T	-	p.L1368fs
LIHC	TCGA-DD-A39Y-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755180	6755180	Frame_Shift_Del	G	-	p.R215fs
LIHC	TCGA-DD-A39Y-01	STT3B	ENST00000488151.1,ENST00000295770.2	chr3	31670813:31670903:31674426:31674639:31677475:31677537,	31674427	31674639	31674442	31674442	Frame_Shift_Del	C	-	p.T734fs
LIHC	TCGA-DD-A39Y-01	STT3B	ENST00000463044.1	chr3	31670813:31670903:31674426:31674676:31677475:31677537,	31674427	31674676	31674442	31674442	Frame_Shift_Del	C	-	p.T734fs
LIHC	TCGA-DD-A39Y-01	CCDC110	ENST00000507501.1,ENST00000510617.1,ENST00000307588.3,ENST00000510481.1,ENST00000506962.1	chr4	186381185:186381392:186382202:186382313:186383796:186383862,	186382203	186382313	186382237	186382237	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A39Y-01	MATN3	ENST00000407540.3	chr2	20201715:20201841:20202921:20203047:20205504:20206071,	20202922	20203047	20202988	20202988	Frame_Shift_Del	C	-	p.E284fs
LIHC	TCGA-DD-A39Y-01	ZSCAN25	ENST00000394150.1	chr7	99217183:99217620:99218995:99219197:99220171:99220263,	99218996	99219197	99219096	99219096	Frame_Shift_Del	G	-	p.W163fs
LIHC	TCGA-DD-A39Y-01	NCBP1	ENST00000478100.1,ENST00000375147.3	chr9	100409773:100409843:100410289:100410505:100412784:100412844,	100410290	100410505	100410326	100410326	Frame_Shift_Del	A	-	p.L239fs
LIHC	TCGA-DD-A39Y-01	TRIM66	ENST00000530502.1	chr11	8641992:8642119:8642578:8642784:8643191:8643366,	8642579	8642784	8642705	8642705	Frame_Shift_Del	G	-	p.P964fs
LIHC	TCGA-DD-A39Y-01	TRIM66	ENST00000299550.6,ENST00000402157.2,ENST00000481014.2	chr11	8641992:8642119:8642578:8642868:8643191:8643366,	8642579	8642868	8642705	8642705	Frame_Shift_Del	G	-	p.P964fs
LIHC	TCGA-DD-A39Y-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43628301:43628489:43644293:43644427:43644712:43644904,	43644294	43644427	43644296	43644296	Frame_Shift_Del	A	-	p.G322fs
LIHC	TCGA-DD-A39Y-01	CCDC170	ENST00000239374.7,ENST00000367290.5	chr6	151894308:151894626:151907023:151907224:151914241:151914415,	151907024	151907224	151907220	151907220	Frame_Shift_Del	A	-	p.Q430fs
LIHC	TCGA-DD-A39Y-01	CTSA	ENST00000485627.1,ENST00000191018.5,ENST00000372484.3,ENST00000419493.2,ENST00000354880.5,ENST00000372459.2	chr20	44521390:44521519:44521858:44521950:44522626:44522711,	44521859	44521950	44521908	44521908	Frame_Shift_Del	C	-	p.S235fs
LIHC	TCGA-DD-A39Y-01	CRTAC1	ENST00000370597.3	chr10	99624757:99625471:99640005:99640149:99642542:99642585,	99640006	99640149	99640100	99640100	Frame_Shift_Del	G	-	p.V576fs
LIHC	TCGA-DD-A39Y-01	RPP14	ENST00000295959.5	chr3	58292246:58292378:58296035:58296133:58296233:58296318,58292040:58292144:58296035:58296133:58296233:58296318,	58296036	58296133	58296091	58296091	Frame_Shift_Del	T	-	p.V12fs
LIHC	TCGA-DD-A39Y-01	RPP14	ENST00000466547.1	chr3	58292040:58292144:58296016:58296133:58296233:58296318,	58296017	58296133	58296091	58296091	Frame_Shift_Del	T	-	p.V12fs
LIHC	TCGA-DD-A39Y-01	SENP6	ENST00000370014.3,ENST00000327284.8,ENST00000447266.2	chr6	76311939:76312292:76331247:76331341:76332466:76332574,76311939:76312292:76331247:76331341:76333615:76333676,	76331248	76331341	76331286	76331286	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-DD-A39Y-01	CNOT3	ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54647472:54647485:54647741:54647870:54647972:54648068,	54647742	54647870	54647778	54647778	Frame_Shift_Del	A	-	p.T98fs
LIHC	TCGA-DD-A39Y-01	STK25	ENST00000483603.1	chr2	242440194:242440211:242440892:242441214:242447420:242447550,	242440893	242441214	242440926	242440926	Frame_Shift_Del	G	-	p.Y77fs
LIHC	TCGA-DD-A39Y-01	STK25	ENST00000442307.1	chr2	242440194:242440211:242440892:242441123:242447919:242447997,242440194:242440211:242440892:242441123:242448637:242448713,242440194:242440211:242440892:242441123:242447420:242447550,242440194:242440211:242440892:242441123:242447857:242447971,	242440893	242441123	242440926	242440926	Frame_Shift_Del	G	-	p.Y77fs
LIHC	TCGA-DD-A39Y-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555184	38555184	Frame_Shift_Del	A	-	p.K1575fs
LIHC	TCGA-DD-A39Y-01	LRRFIP1	ENST00000308482.9	chr2	238664737:238664830:238666098:238666191:238667371:238667464,	238666099	238666191	238666189	238666189	Frame_Shift_Del	G	-	p.I407fs
LIHC	TCGA-DD-A39Y-01	MYO10	ENST00000513882.1,ENST00000513610.1	chr5	16761572:16761655:16762153:16762222:16762653:16762746,	16762154	16762222	16762178	16762178	Frame_Shift_Del	A	-	p.G545fs
LIHC	TCGA-DD-A39Y-01	PDE2A	ENST00000542969.2,ENST00000539367.1,ENST00000485058.3,ENST00000541998.1,ENST00000538749.1,ENST00000543575.1	chr11	72319705:72319795:72342121:72342183:72385180:72385452,72319705:72319795:72342121:72342183:72353297:72353370,	72342122	72342183	72342169	72342169	Frame_Shift_Del	G	-	p.L12fs
LIHC	TCGA-DD-A39Y-01	MARK3	ENST00000554627.1,ENST00000216288.7	chr14	103933415:103933528:103934417:103934523:103941329:103941547,	103934418	103934523	103934485	103934485	Frame_Shift_Del	T	-	p.V409fs
LIHC	TCGA-DD-A39Y-01	MARK3	ENST00000303622.9,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000416682.2,ENST00000429436.2	chr14	103933415:103933528:103934369:103934523:103941329:103941547,	103934370	103934523	103934485	103934485	Frame_Shift_Del	T	-	p.V409fs
LIHC	TCGA-DD-A39Y-01	MTHFD1L	ENST00000367307.4,ENST00000367308.4,ENST00000423867.1,ENST00000367321.3,ENST00000441122.1	chr6	151197225:151197310:151198769:151198820:151198908:151198962,	151198770	151198820	151198808	151198808	Frame_Shift_Del	T	-	p.N117fs
LIHC	TCGA-DD-A39Y-01	SMARCD2	ENST00000584400.1,ENST00000323347.10,ENST00000225742.9,ENST00000448276.2	chr17	61912850:61912927:61914281:61914404:61914554:61914597,	61914282	61914404	61914354	61914354	Frame_Shift_Del	A	-	p.E166fs
LIHC	TCGA-DD-A39Y-01	ATF3	ENST00000465155.1,ENST00000341491.4	chr1	212782256:212782272:212788359:212788603:212791468:212791576,	212788360	212788603	212788594	212788594	Frame_Shift_Del	A	-	p.T77fs
LIHC	TCGA-DD-A39Y-01	ZCWPW2	ENST00000419130.1,ENST00000383768.2,ENST00000457897.1,ENST00000421010.1	chr3	28555554:28555613:28557044:28557112:28562482:28562607,	28557045	28557112	28557110	28557110	Frame_Shift_Del	G	-	p.R261fs
LIHC	TCGA-DD-A39Y-01	TTC37	ENST00000507805.1,ENST00000358746.2	chr5	94852849:94853026:94856419:94856522:94857757:94857790,	94856420	94856522	94856440	94856440	Frame_Shift_Del	T	-	p.A699fs
LIHC	TCGA-DD-A39Y-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965336	123965336	Frame_Shift_Del	C	-	p.A529fs
LIHC	TCGA-DD-A39Y-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876439	27876439	Frame_Shift_Del	C	-	p.E730fs
LIHC	TCGA-DD-A39Y-01	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000438259.2,ENST00000443646.1,ENST00000325123.4,ENST00000439910.1	chr3	42573294:42573361:42573733:42573825:42576466:42576596,	42573734	42573825	42573788	42573788	Frame_Shift_Del	C	-	p.R324fs
LIHC	TCGA-DD-A39Y-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128638710:128638779:128640056:128640188:128641917:128642073,	128640057	128640188	128640085	128640085	Frame_Shift_Del	A	-	p.L357fs
LIHC	TCGA-DD-A39Y-01	MYO15A	ENST00000433411.3	chr17	18075470:18075604:18077094:18077235:18082082:18083116,18075470:18075604:18077094:18077235:18082030:18082184,18075520:18075730:18077094:18077235:18082082:18083116,	18077095	18077235	18077149	18077149	Frame_Shift_Del	C	-	p.R3468fs
LIHC	TCGA-DD-A39Y-01	CLK4	ENST00000521621.1,ENST00000519583.1,ENST00000520878.1,ENST00000316308.4	chr5	178030844:178030935:178032303:178032383:178035376:178035459,	178032304	178032383	178032333	178032333	Frame_Shift_Del	G	-	p.I396fs
LIHC	TCGA-DD-A39Y-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924388	150924388	Frame_Shift_Del	C	-	p.T2101fs
LIHC	TCGA-DD-A39Y-01	SOS1	ENST00000428721.2,ENST00000461545.1,ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39262352:39262451:39262530:39262641:39278284:39278428,	39262531	39262641	39262585	39262585	Frame_Shift_Del	A	-	p.H308fs
LIHC	TCGA-DD-A39Y-01	SYTL3	ENST00000297239.9,ENST00000360448.3	chr6	159086426:159086645:159103956:159104021:159128261:159128313,	159103957	159104021	159103969	159103969	Frame_Shift_Del	A	-	p.I114fs
LIHC	TCGA-DD-A39Y-01	IMMP1L	ENST00000527184.1	chr11	31474264:31474639:31477806:31477933:31531065:31531110,31455006:31455117:31477806:31477933:31482172:31482261,31470576:31470638:31477806:31477933:31482172:31482261,	31477807	31477933	31477911	31477911	Frame_Shift_Del	T	-	p.S73fs
LIHC	TCGA-DD-A39Y-01	KRT7	ENST00000331817.5	chr12	52636868:52636921:52639195:52639416:52641960:52641995,	52639196	52639416	52639299	52639299	Frame_Shift_Del	G	-	p.R363fs
LIHC	TCGA-DD-A39Y-01	KRT7	ENST00000549127.1	chr12	52636868:52636921:52639273:52639416:52641960:52641995,	52639274	52639416	52639299	52639299	Frame_Shift_Del	G	-	p.R363fs
LIHC	TCGA-DD-A39Y-01	GPN3	ENST00000550228.1	chr12	110893642:110893735:110895314:110895439:110897499:110897667,110891616:110891676:110895314:110895439:110897499:110897667,	110895315	110895439	110895351	110895351	Frame_Shift_Del	A	-	p.L178fs
LIHC	TCGA-DD-A39Y-01	L3MBTL3	ENST00000526019.1,ENST00000533560.1,ENST00000529410.1,ENST00000361794.2,ENST00000368139.2,ENST00000368136.2	chr6	130415409:130415512:130425570:130425720:130442023:130442103,	130425571	130425720	130425608	130425608	Frame_Shift_Del	A	-	p.N591fs
LIHC	TCGA-DD-A39Y-01	MYH11	ENST00000576790.2,ENST00000300036.5	chr16	15872636:15872700:15876241:15876334:15880486:15880589,	15876242	15876334	15876271	15876271	Frame_Shift_Del	T	-	p.T240fs
LIHC	TCGA-DD-A39Y-01	CSNK1A1	ENST00000504676.1,ENST00000261798.5,ENST00000515768.1,ENST00000515435.1,ENST00000503350.2,ENST00000377843.2,ENST00000606826.1,ENST00000606719.1	chr5	148886589:148886696:148889441:148889516:148891356:148891435,	148889442	148889516	148889476	148889476	Frame_Shift_Del	T	-	p.K267fs
LIHC	TCGA-DD-A39Y-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525560	75525560	Frame_Shift_Del	C	-	p.V456fs
LIHC	TCGA-DD-A39Y-01	PYROXD1	ENST00000375266.4,ENST00000538582.1,ENST00000240651.9	chr12	21602496:21602625:21605014:21605088:21608065:21608226,	21605015	21605088	21605042	21605042	Frame_Shift_Del	A	-	p.A147fs
LIHC	TCGA-DD-A39Y-01	LIMK1	ENST00000435201.1	chr7	73520406:73520573:73521400:73521523:73522200:73522287,	73521401	73521523	73521482	73521482	Frame_Shift_Del	G	-	p.H341fs
LIHC	TCGA-DD-A39Y-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000483414.1	chr7	73520406:73520573:73521339:73521523:73522200:73522287,	73521340	73521523	73521482	73521482	Frame_Shift_Del	G	-	p.H341fs
LIHC	TCGA-DD-A39Y-01	ELP3	ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000542181.1,ENST00000537665.1,ENST00000523687.1,ENST00000524103.1,ENST00000520110.1,ENST00000519261.1,ENST00000521015.1	chr8	27989794:27989921:27995214:27995408:28013458:28013549,	27995215	27995408	27995291	27995291	Frame_Shift_Del	T	-	p.L328fs
LIHC	TCGA-DD-A39Y-01	PRUNE2	ENST00000376713.3,ENST00000492157.1,ENST00000428286.1,ENST00000376718.3,ENST00000489555.1	chr9	79461514:79461594:79465378:79465581:79469019:79469124,	79465379	79465581	79465566	79465566	Frame_Shift_Del	C	-	p.V53fs
LIHC	TCGA-DD-A39Y-01	KIAA0355	ENST00000299505.6	chr19	34830771:34830897:34832326:34833360:34838781:34838947,	34832327	34833360	34832378	34832378	Frame_Shift_Del	T	-	p.D513fs
LIHC	TCGA-DD-A39Y-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41064555:41064746:41069761:41069935:41073820:41073962,	41069762	41069935	41069767	41069767	Frame_Shift_Del	G	-	p.W1674fs
LIHC	TCGA-DD-A39Y-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806378	33806378	Frame_Shift_Del	T	-	p.N284fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60087940	60087940	Frame_Shift_Del	A	-	p.G647fs
LIHC	TCGA-DD-A39Y-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000524984.1,ENST00000531879.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000528173.1,ENST00000527911.1	chr11	46393977:46394060:46394166:46394227:46394320:46394393,	46394167	46394227	46394213	46394213	Frame_Shift_Del	G	-	p.C540fs
LIHC	TCGA-DD-A39Y-01	NT5DC2	ENST00000307092.4,ENST00000307076.4,ENST00000422318.2,ENST00000486792.1,ENST00000459839.1	chr3	52562207:52562327:52562461:52562555:52562652:52562708,	52562462	52562555	52562508	52562508	Frame_Shift_Del	C	-	p.G199fs
LIHC	TCGA-DD-A39Y-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151829485:151829619:151829811:151830009:151835346:151835493,	151829812	151830009	151829842	151829842	Frame_Shift_Del	A	-	p.V444fs
LIHC	TCGA-DD-A39Y-01	EZH1	ENST00000592743.1,ENST00000589846.1,ENST00000586103.1,ENST00000585912.1,ENST00000590078.1,ENST00000435174.1,ENST00000415827.2,ENST00000428826.2,ENST00000585893.1,ENST00000585550.1,ENST00000588897.1,ENST00000591330.1	chr17	40858024:40858203:40859975:40860101:40860893:40860934,	40859976	40860101	40860046	40860046	Frame_Shift_Del	G	-	p.C531fs
LIHC	TCGA-DD-A39Y-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73744921:73745126:73746191:73746349:73746760:73746871,	73746192	73746349	73746239	73746239	Frame_Shift_Del	C	-	p.P1121fs
LIHC	TCGA-DD-A39Y-01	ZNF318	ENST00000318149.3,ENST00000605935.1,ENST00000361428.2	chr6	43316061:43316363:43320114:43320214:43322401:43323883,	43320115	43320214	43320194	43320194	Frame_Shift_Del	T	-	p.L898X
LIHC	TCGA-DD-A39Y-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991715	21991715	Frame_Shift_Del	C	-	p.G716fs
LIHC	TCGA-DD-A39Y-01	PSRC1	ENST00000429031.1,ENST00000369907.3,ENST00000369909.2,ENST00000369903.2,ENST00000369904.3,ENST00000438534.2,ENST00000409267.1,ENST00000409138.2,ENST00000418914.2	chr1	109823776:109823873:109824240:109824682:109825139:109825197,	109824241	109824682	109824582	109824582	Frame_Shift_Del	G	-	p.Q60fs
LIHC	TCGA-DD-A39Y-01	IGDCC3	ENST00000558354.1,ENST00000327987.4	chr15	65622887:65623079:65623387:65623552:65623749:65623997,	65623388	65623552	65623433	65623433	Frame_Shift_Del	C	-	p.A506fs
LIHC	TCGA-DD-A39Y-01	GDI2	ENST00000456041.1	chr10	5827968:5828013:5836847:5836952:5838725:5838824,	5836848	5836952	5836890	5836890	Frame_Shift_Del	T	-	p.I116fs
LIHC	TCGA-DD-A39Y-01	GDI2	ENST00000380127.1,ENST00000608581.1,ENST00000418688.1,ENST00000380191.4,ENST00000380132.4	chr10	5827968:5828013:5836847:5836982:5838725:5838824,	5836848	5836982	5836890	5836890	Frame_Shift_Del	T	-	p.I116fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257212	9257212	Frame_Shift_Del	T	-	p.I1316fs
LIHC	TCGA-DD-A39Y-01	MMP19	ENST00000548629.1,ENST00000322569.4,ENST00000552872.1	chr12	56232389:56232518:56233279:56233525:56236136:56236222,56232389:56232518:56233279:56233525:56234450:56234597,	56233280	56233525	56233389	56233389	Frame_Shift_Del	C	-	p.L220fs
LIHC	TCGA-DD-A39Y-01	FIG4	ENST00000441478.2,ENST00000230124.3,ENST00000415980.1	chr6	110087931:110088098:110098124:110098263:110106172:110106231,	110098125	110098263	110098164	110098164	Frame_Shift_Del	T	-	p.V597fs
LIHC	TCGA-DD-A39Y-01	SORCS2	ENST00000329016.9,ENST00000507866.2	chr4	7715966:7716100:7716909:7717038:7719738:7719910,	7716910	7717038	7716932	7716932	Frame_Shift_Del	T	-	p.S715fs
LIHC	TCGA-DD-A39Y-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115269603:115269711:115272878:115273043:115273128:115273269,	115272879	115273043	115272999	115272999	Frame_Shift_Del	T	-	p.L459fs
LIHC	TCGA-DD-A39Y-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122422588:122422825:122423373:122423595:122427036:122427115,	122423374	122423595	122423544	122423544	Frame_Shift_Del	T	-	p.T1163fs
LIHC	TCGA-DD-A39Y-01	IQCB1	ENST00000460108.1,ENST00000349820.6,ENST00000393650.3,ENST00000310864.6	chr3	121526190:121526290:121527762:121527856:121544897:121545027,	121527763	121527856	121527845	121527845	Frame_Shift_Del	T	-	p.D136fs
LIHC	TCGA-DD-A39Y-01	PSRC1	ENST00000369907.3,ENST00000369909.2,ENST00000369903.2,ENST00000492431.1,ENST00000369904.3,ENST00000438534.2,ENST00000409267.1,ENST00000409138.2	chr1	109822206:109822778:109823017:109823111:109823398:109823538,	109823018	109823111	109823047	109823047	Frame_Shift_Del	G	-	p.R324fs
LIHC	TCGA-DD-A39Y-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96232106:96232208:96232435:96232567:96235824:96235893,	96232436	96232567	96232481	96232481	Frame_Shift_Del	A	-	p.E472fs
LIHC	TCGA-DD-A39Y-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195511523	195511523	Frame_Shift_Del	C	-	p.A2310fs
LIHC	TCGA-DD-A39Y-01	PCMTD1	ENST00000522514.1	chr8	52758220:52758323:52773404:52773806:52811489:52811530,	52773405	52773806	52773460	52773460	Frame_Shift_Del	A	-	p.L85fs
LIHC	TCGA-DD-A39Y-01	FZD6	ENST00000522566.1,ENST00000523739.1,ENST00000358755.4,ENST00000522484.1	chr8	104312427:104312512:104330817:104331014:104337262:104337726,104312427:104312512:104330817:104331014:104336708:104337726,	104330818	104331014	104330820	104330820	Frame_Shift_Del	T	-	p.H60fs
LIHC	TCGA-DD-A39Y-01	XRCC5	ENST00000460284.1,ENST00000392133.3,ENST00000392132.2	chr2	217054947:217055057:217057361:217057458:217059641:217059709,	217057362	217057458	217057430	217057430	Frame_Shift_Del	A	-	p.L671X
LIHC	TCGA-DD-A39Y-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18840607:18841077:18841247:18841437:18841540:18841691,	18841248	18841437	18841357	18841357	Frame_Shift_Del	A	-	p.D3009fs
LIHC	TCGA-DD-A39Y-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134345	161134345	Frame_Shift_Del	A	-	p.Q442fs
LIHC	TCGA-DD-A39Y-01	EHMT2	ENST00000465429.1,ENST00000375528.4,ENST00000375530.4,ENST00000375537.4,ENST00000395728.3	chr6	31864039:31864293:31864382:31864601:31864699:31864766,	31864383	31864601	31864543	31864543	Frame_Shift_Del	G	-	p.D57fs
LIHC	TCGA-DD-A39Y-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107956410	107956410	Frame_Shift_Del	A	-	p.A787fs
LIHC	TCGA-DD-A39Y-01	CAPN11	ENST00000533604.1,ENST00000524554.1,ENST00000398776.1	chr6	44144574:44144735:44144978:44145157:44147355:44147367,	44144979	44145157	44145022	44145022	Frame_Shift_Del	G	-	p.E427fs
LIHC	TCGA-DD-A39Y-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114348277:114348445:114355205:114355262:114356501:114356545,	114355206	114355262	114355220	114355220	Frame_Shift_Del	C	-	p.Q66fs
LIHC	TCGA-DD-A39Y-01	BRAT1	ENST00000421712.1	chr7	2582837:2582957:2583223:2583596:2586957:2587112,	2583224	2583596	2583461	2583461	Frame_Shift_Del	C	-	p.G189fs
LIHC	TCGA-DD-A39Y-01	AEBP2	ENST00000541908.1,ENST00000512223.2,ENST00000266508.9,ENST00000360995.4,ENST00000398864.3,ENST00000398731.2	chr12	19665331:19665399:19667604:19667718:19671020:19671047,	19667605	19667718	19667647	19667647	Frame_Shift_Del	A	-	p.L470X
LIHC	TCGA-DD-A39Y-01	CNIH2	ENST00000528852.1,ENST00000530519.1,ENST00000311445.6	chr11	66049729:66049798:66050203:66050251:66050505:66050618,	66050204	66050251	66050215	66050215	Frame_Shift_Del	A	-	p.L54X
LIHC	TCGA-DD-A39Y-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551340	10551340	Frame_Shift_Del	A	-	p.S435fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9275521:9275665:9279546:9279642:9280938:9283757,	9279547	9279642	9279634	9279634	Frame_Shift_Del	A	-	p.D1998fs
LIHC	TCGA-DD-A39Y-01	HMGCS2	ENST00000544913.2	chr1	120299895:120300061:120301740:120301905:120302486:120302612,120299895:120300061:120301740:120301905:120306794:120307249,	120301741	120301905	120301762	120301762	Frame_Shift_Del	T	-	p.I277fs
LIHC	TCGA-DD-A39Y-01	SLFN13	ENST00000285013.6	chr17	33770807:33770939:33771633:33772712:33774286:33774413,	33771634	33772712	33772591	33772591	Frame_Shift_Del	T	-	p.T37fs
LIHC	TCGA-DD-A39Y-01	SLFN13	ENST00000530782.1	chr17	33771633:33771720:33772391:33772712:33774286:33774413,	33772392	33772712	33772591	33772591	Frame_Shift_Del	T	-	p.T37fs
LIHC	TCGA-DD-A39Y-01	HLA-G	ENST00000478519.1,ENST00000376818.3	chr6	29796319:29796595:29797194:29797470:29797592:29797709,29795935:29796093:29797194:29797470:29797592:29797709,	29797195	29797470	29797196	29797196	Frame_Shift_Del	C	-	p.D207fs
LIHC	TCGA-DD-A39Y-01	ESYT1	ENST00000394048.5,ENST00000541590.1,ENST00000267113.4,ENST00000547667.1	chr12	56531125:56531157:56531282:56531459:56531615:56531698,	56531283	56531459	56531342	56531342	Frame_Shift_Del	G	-	p.L676fs
LIHC	TCGA-BC-A10U-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266132	41266133	Frame_Shift_Ins	-	C	p.A43fs
LIHC	TCGA-BC-A10U-01	VIM	ENST00000487938.1,ENST00000544301.1,ENST00000224237.5	chr10	17276691:17276817:17277167:17277388:17277844:17277888,	17277168	17277388	17277290	17277291	Frame_Shift_Ins	-	C	p.A377fs
LIHC	TCGA-BC-A10U-01	SFPQ	ENST00000357214.5,ENST00000470472.1	chr1	35654603:35654688:35654786:35654983:35656098:35656175,	35654787	35654983	35654866	35654867	Frame_Shift_Ins	-	T	p.N511fs
LIHC	TCGA-BC-A10U-01	ITIH2	ENST00000379587.4,ENST00000477751.1,ENST00000358415.4	chr10	7771914:7772096:7773773:7773959:7774300:7774436,	7773774	7773959	7773850	7773850	Frame_Shift_Del	T	-	p.V513fs
LIHC	TCGA-BC-A10U-01	ZFX	ENST00000379177.1,ENST00000539115.1,ENST00000338565.3,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24226334:24226487:24227016:24227157:24228309:24229716,	24227017	24227157	24227055	24227104	Frame_Shift_Del	GCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGC	-	p.377_394del
LIHC	TCGA-BC-A10U-01	NUDT14	ENST00000392568.2	chr14	105639275:105639598:105642870:105643108:105643299:105643328,	105642871	105643108	105643003	105643004	Frame_Shift_Ins	-	C	p.V99fs
LIHC	TCGA-BC-A10U-01	KANK4	ENST00000371150.1,ENST00000354381.3,ENST00000371153.4	chr1	62713143:62713344:62718738:62718881:62728763:62728983,	62718739	62718881	62718788	62718789	Frame_Shift_Ins	-	C	p.V878fs
LIHC	TCGA-DD-AADQ-01	ALB	ENST00000415165.2,ENST00000484992.1,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74280751:74280884:74281972:74282070:74283804:74283820,74280751:74280884:74281972:74282070:74283247:74283331,	74281973	74282070	74281992	74281992	Frame_Shift_Del	T	-	p.L404fs
LIHC	TCGA-DD-AADQ-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68265198:68265279:68265384:68265597:68265704:68266006,	68265385	68265597	68265386	68265401	Frame_Shift_Del	TGCTGGTTGAGCACCA	-	p.499_504del
LIHC	TCGA-CC-A8HV-01	IKZF3	ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000535189.1	chr17	37944510:37944627:37947668:37947836:37985639:37985741,37944510:37944627:37947668:37947836:37948925:37949186,	37947669	37947836	37947672	37947681	Frame_Shift_Del	AATGTGTCCT	-	p.194_197del
LIHC	TCGA-DD-AACN-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000510166.1,ENST00000509063.1,ENST00000515133.1,ENST00000441319.1	chr4	74270017:74270123:74272345:74272478:74275071:74275204,74270837:74270890:74272345:74272478:74274310:74274457,	74272346	74272478	74272457	74272457	Frame_Shift_Del	T	-	p.A83fs
LIHC	TCGA-DD-AADL-01	TAPBPL	ENST00000266556.7,ENST00000543567.1,ENST00000539384.1	chr12	6562612:6562882:6566571:6566910:6567810:6567857,	6566572	6566910	6566826	6566838	Frame_Shift_Del	ACTATACAGGACG	-	p.273_277del
LIHC	TCGA-CC-A5UD-01	NME6	ENST00000494209.1,ENST00000415644.1,ENST00000442597.1,ENST00000418431.1,ENST00000451657.1	chr3	48338245:48338319:48339916:48340013:48342842:48342877,	48339917	48340013	48339972	48339972	Frame_Shift_Del	T	-	p.Q20fs
LIHC	TCGA-CC-A5UD-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670764	13670765	Frame_Shift_Del	GC	-	p.938_938del
LIHC	TCGA-CC-A5UD-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670765	13670766	Frame_Shift_Del	CG	-	p.938_939del
LIHC	TCGA-GJ-A3OU-01	CPSF4	ENST00000441580.1,ENST00000484112.1,ENST00000471455.1,ENST00000430038.1,ENST00000292476.5,ENST00000412686.1,ENST00000436336.2	chr7	99045743:99045896:99047898:99047994:99049990:99050063,99045743:99045896:99047898:99047994:99048324:99048418,	99047899	99047994	99047916	99047917	Frame_Shift_Ins	-	A	p.E109fs
LIHC	TCGA-ED-A4XI-01	CNOT4	ENST00000361528.4,ENST00000315544.5,ENST00000428680.2,ENST00000356162.4,ENST00000451834.1,ENST00000423368.2	chr7	135107062:135107102:135122905:135123171:135194636:135194686,	135122906	135123171	135122994	135122994	Frame_Shift_Del	A	-	p.F29fs
LIHC	TCGA-ED-A4XI-01	FBXO31	ENST00000311635.7,ENST00000563113.1	chr16	87369760:87369870:87376482:87376557:87377203:87377371,	87376483	87376557	87376481	87376503	Frame_Shift_Del	GCCGGCTGGTGGGCTCACCTCCT	-	p.243_244del
LIHC	TCGA-5C-AAPD-01	DHX57	ENST00000295373.6,ENST00000457308.1,ENST00000452978.1	chr2	39042662:39042797:39046018:39046102:39046190:39046250,	39046019	39046102	39046078	39046104	Frame_Shift_Del	CTTCTTTTGTACTTAGCTGCCATCCCT	-	p.1130_1138del
LIHC	TCGA-5C-AAPD-01	DHX57	ENST00000460193.1	chr2	39042662:39042797:39046014:39046102:39046190:39046250,	39046015	39046102	39046078	39046104	Frame_Shift_Del	CTTCTTTTGTACTTAGCTGCCATCCCT	-	p.1130_1138del
LIHC	TCGA-5C-AAPD-01	ARSD	ENST00000381154.1	chrX	2826761:2826883:2827857:2828020:2828699:2828834,	2827858	2828020	2827944	2827966	Frame_Shift_Del	GGCCGGGAGCACCCCCGGCCAGT	-	p.397_405del
LIHC	TCGA-5C-AAPD-01	ANKRD20A4	ENST00000357336.3,ENST00000427650.2	chr9	69385604:69385719:69385881:69386055:69389938:69390045,	69385882	69386055	69386021	69386021	Frame_Shift_Del	T	-	p.L153fs
LIHC	TCGA-5C-AAPD-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579559	7579559	Frame_Shift_Del	A	-	p.L43fs
LIHC	TCGA-5C-AAPD-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037924	49037924	Frame_Shift_Del	A	-	p.F721fs
LIHC	TCGA-WX-AA46-01	PPP2R5C	ENST00000557621.1,ENST00000445439.3,ENST00000334743.5,ENST00000557095.1,ENST00000328724.5,ENST00000557268.1,ENST00000556218.1,ENST00000557716.2,ENST00000350249.3,ENST00000422945.2	chr14	102349873:102349899:102356573:102356633:102359336:102359390,	102356574	102356633	102356589	102356590	Frame_Shift_Del	AG	-	p.270_270del
LIHC	TCGA-UB-A7MD-01	HCFC2	ENST00000229330.4,ENST00000544223.2	chr12	104473222:104473431:104474523:104474608:104476277:104476384,	104474524	104474608	104474603	104474604	Frame_Shift_Del	AA	-	p.254_254del
LIHC	TCGA-5C-A9VH-01	GZMH	ENST00000216338.4	chr14	25075690:25075952:25076354:25076612:25076817:25076953,	25076355	25076612	25076509	25076509	Frame_Shift_Del	C	-	p.G148fs
LIHC	TCGA-5C-A9VH-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226923826	226923826	Frame_Shift_Del	C	-	p.G445fs
LIHC	TCGA-5C-A9VH-01	GDNF	ENST00000515058.1	chr5	37816127:37816237:37834825:37834924:37839608:37839782,	37834826	37834924	37834855	37834855	Frame_Shift_Del	T	-	p.H32fs
LIHC	TCGA-DD-AACE-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576863	7576863	Frame_Shift_Del	A	-	p.F328fs
LIHC	TCGA-KR-A7K2-01	MSMO1	ENST00000393766.2	chr4	166248872:166248916:166258940:166259089:166259803:166259930,	166258941	166259089	166259057	166259058	Frame_Shift_Ins	-	A	p.N124fs
LIHC	TCGA-5R-AAAM-01	PAPLN	ENST00000555445.1	chr14	73727863:73728002:73729105:73729535:73730352:73730490,	73729106	73729535	73729359	73729404	Frame_Shift_Del	AAAGCCCTGGCCTTCTGGTGGTCTCTGGCGGCAAGACCAACAGCCT	-	p.822_837del
LIHC	TCGA-5R-AAAM-01	PAPLN	ENST00000340738.5,ENST00000555123.1,ENST00000554301.1,ENST00000427855.1,ENST00000381166.3	chr14	73727873:73728002:73729057:73729535:73730352:73730490,	73729058	73729535	73729359	73729404	Frame_Shift_Del	AAAGCCCTGGCCTTCTGGTGGTCTCTGGCGGCAAGACCAACAGCCT	-	p.822_837del
LIHC	TCGA-DD-A39X-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283258	74283259	Frame_Shift_Del	CG	-	p.433_434del
LIHC	TCGA-T1-A6J8-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30000996	30000997	Frame_Shift_Del	AA	-	p.1539_1540del
LIHC	TCGA-ES-A2HS-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	359972:360069:364542:364683:396147:396322,	364543	364683	364562	364563	Frame_Shift_Del	AC	-	p.334_334del
LIHC	TCGA-ES-A2HS-01	ALB	ENST00000295897.4,ENST00000509063.1,ENST00000505649.1	chr4	74272345:74272478:74275071:74275204:74276028:74276126,74274354:74274522:74275071:74275204:74276028:74276081,	74275072	74275204	74275125	74275126	Frame_Shift_Ins	-	C	p.L179fs
LIHC	TCGA-LG-A6GG-01	BPIFA1	ENST00000375422.2,ENST00000354297.4,ENST00000375413.4	chr20	31827608:31827716:31828038:31828191:31829190:31829275,	31828039	31828191	31828158	31828158	Frame_Shift_Del	C	-	p.S183fs
LIHC	TCGA-DD-AAW1-01	MEF2C	ENST00000506716.1,ENST00000513252.1,ENST00000424173.2	chr5	88047682:88047860:88056804:88056942:88100414:88100618,	88056805	88056942	88056848	88056849	Frame_Shift_Ins	-	T	p.I138fs
LIHC	TCGA-DD-AAW1-01	USP54	ENST00000466048.2,ENST00000498143.1,ENST00000424265.1,ENST00000339859.4,ENST00000394811.2,ENST00000408019.1,ENST00000428547.1	chr10	75280665:75280785:75283340:75283508:75286404:75286538,	75283341	75283508	75283430	75283448	Frame_Shift_Del	CGAAGTTCCTGTTCCTGCG	-	p.752_758del
LIHC	TCGA-BC-A8YO-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283804:74284028:74285223:74285262,74283247:74283386:74283804:74284028:74285223:74285262,	74283805	74284028	74284021	74284024	Frame_Shift_Del	AAAC	-	p.548_549del
LIHC	TCGA-BC-A8YO-01	HECTD3	ENST00000372172.4	chr1	45473911:45473993:45474207:45474373:45474815:45474898,	45474208	45474373	45474271	45474271	Frame_Shift_Del	C	-	p.R392fs
LIHC	TCGA-DD-A116-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726211	71726220	Frame_Shift_Del	CCTGATGGGC	-	p.777_780del
LIHC	TCGA-DD-A116-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8959521:8959706:8961951:8962031:8962353:8962395,	8961952	8962031	8961997	8961998	Frame_Shift_Ins	-	A	p.L14460fs
LIHC	TCGA-DD-AAD6-01	CRMP1	ENST00000512574.1,ENST00000324989.7,ENST00000511535.1,ENST00000397890.2	chr4	5822969:5823578:5827220:5827386:5830215:5830395,	5827221	5827386	5827327	5827327	Frame_Shift_Del	T	-	p.A622fs
LIHC	TCGA-DD-AAD6-01	NDUFS6	ENST00000469176.1	chr5	1801534:1801663:1802434:1802488:1814452:1814575,	1802435	1802488	1802445	1802445	Frame_Shift_Del	A	-	p.D48fs
LIHC	TCGA-MI-A75G-01	TPM2	ENST00000329305.2,ENST00000378300.5,ENST00000360958.2,ENST00000378292.3,ENST00000471212.1	chr9	35685430:35685548:35685643:35685777:35689142:35689268,	35685644	35685777	35685682	35685688	Frame_Shift_Del	CTTCTGC	-	p.111_113del
LIHC	TCGA-MI-A75G-01	TMCO3	ENST00000434316.2	chr13	114193671:114193822:114201614:114201694:114202617:114202704,	114201615	114201694	114201642	114201642	Frame_Shift_Del	C	-	p.A573fs
LIHC	TCGA-MI-A75G-01	TRAK1	ENST00000396175.1,ENST00000487159.1,ENST00000327628.5,ENST00000341421.3	chr3	42242309:42242546:42243927:42244244:42251258:42251414,	42243928	42244244	42243973	42243973	Frame_Shift_Del	C	-	p.G491fs
LIHC	TCGA-MI-A75G-01	TRAK1	ENST00000396175.1,ENST00000487159.1,ENST00000327628.5,ENST00000341421.3	chr3	42242309:42242546:42243927:42244244:42251258:42251414,	42243928	42244244	42243973	42243976	Frame_Shift_Del	CTCC	-	p.491_492del
LIHC	TCGA-CC-5260-01	TCEANC2	ENST00000234827.1	chr1	54519273:54519431:54520053:54520197:54534428:54534570,	54520054	54520197	54520147	54520148	Frame_Shift_Ins	-	T	p.K18fs
LIHC	TCGA-CC-5260-01	ANKRD17	ENST00000558247.1,ENST00000330838.6	chr4	74026908:74027065:74043096:74043250:74123992:74124039,	74043097	74043250	74043114	74043115	Frame_Shift_Ins	-	C	p.A177fs
LIHC	TCGA-CC-5260-01	USP37	ENST00000454775.1	chr2	219418275:219418447:219423220:219423440:219425542:219425606,	219423221	219423440	219423315	219423315	Frame_Shift_Del	T	-	p.K21fs
LIHC	TCGA-CC-5260-01	USP37	ENST00000258399.3,ENST00000418019.1,ENST00000338465.5	chr2	219418275:219418447:219423220:219423400:219425542:219425606,	219423221	219423400	219423315	219423315	Frame_Shift_Del	T	-	p.K21fs
LIHC	TCGA-CC-5260-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617255:617770:617953:618111:619305:619390,617255:617770:617953:618111:618598:618661,	617954	618111	618063	618064	Frame_Shift_Ins	-	C	p.A670fs
LIHC	TCGA-CC-5260-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437456	52437456	Frame_Shift_Del	C	-	p.V569fs
LIHC	TCGA-CC-5260-01	CBS	ENST00000398158.1,ENST00000398168.1,ENST00000488526.1,ENST00000441030.1,ENST00000465732.1,ENST00000352178.5,ENST00000470912.1,ENST00000398165.3,ENST00000359624.3	chr21	44488618:44488725:44492094:44492311:44493375:44493413,	44492095	44492311	44492127	44492128	Frame_Shift_Ins	-	G	p.P59fs
LIHC	TCGA-CC-5260-01	POU6F1	ENST00000550824.1,ENST00000333640.10,ENST00000389243.4	chr12	51586172:51586254:51589752:51589956:51591552:51591568,51586172:51586254:51589752:51589956:51590581:51590710,	51589753	51589956	51589910	51589911	Frame_Shift_Ins	-	C	p.A31fs
LIHC	TCGA-CC-5260-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56204319:56204403:56206091:56206349:56206513:56206631,	56206092	56206349	56206198	56206199	Frame_Shift_Del	TG	-	p.543_543del
LIHC	TCGA-DD-AACQ-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58956922:58956958:58965500:58965678:58975272:58975427,58958861:58958993:58965500:58965678:58975272:58975427,	58965501	58965678	58965630	58965631	Frame_Shift_Del	CA	-	p.1426_1427del
LIHC	TCGA-ED-A7XP-01	TMEM44	ENST00000452358.1	chr3	194331654:194331749:194336297:194336399:194343952:194344039,	194336298	194336399	194336377	194336377	Frame_Shift_Del	C	-	p.G325fs
LIHC	TCGA-ED-A7XP-01	COL9A1	ENST00000357250.6,ENST00000370496.3	chr6	70993439:70993523:71003869:71004266:71009745:71009878,	71003870	71004266	71003965	71003965	Frame_Shift_Del	T	-	p.I201fs
LIHC	TCGA-ED-A7XP-01	SEC22A	ENST00000473494.2,ENST00000309934.4,ENST00000492595.1	chr3	122964745:122964861:122978370:122978436:122990368:122990511,	122978371	122978436	122978413	122978413	Frame_Shift_Del	G	-	p.L233fs
LIHC	TCGA-DD-A118-01	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381017.2,ENST00000381022.2	chr9	13106941:13107110:13108934:13109058:13109950:13110063,	13108935	13109058	13108980	13108981	Frame_Shift_Ins	-	C	p.S1978fs
LIHC	TCGA-DD-A118-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560246	19560247	Frame_Shift_Ins	-	G	p.P563fs
LIHC	TCGA-DD-A118-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128958	46128959	Frame_Shift_Ins	-	C	p.A160fs
LIHC	TCGA-DD-A118-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128958	46128959	Frame_Shift_Ins	-	C	p.A160fs
LIHC	TCGA-DD-A118-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74283982:74284028:74285223:74285356:74286808:74286910,74284016:74284028:74285223:74285356:74285970:74286038,	74285224	74285356	74285229	74285286	Frame_Shift_Del	TTGTTGAGCTCGTGAAACACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTAT	-	p.553_572del
LIHC	TCGA-3K-AAZ8-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31613172:31613315:31632522:31633189:31648743:31648836,	31632523	31633189	31633069	31633069	Frame_Shift_Del	A	-	p.Y120fs
LIHC	TCGA-3K-AAZ8-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283804:74284028:74285223:74285262,74283247:74283386:74283804:74284028:74285223:74285262,	74283805	74284028	74283862	74283863	Frame_Shift_Del	AG	-	p.495_496del
LIHC	TCGA-DD-AAVZ-01	NFIA	ENST00000476646.1,ENST00000407417.3,ENST00000485903.2,ENST00000371189.4,ENST00000371187.3,ENST00000371191.1,ENST00000403491.3	chr1	61554083:61554352:61743191:61743257:61798183:61798258,	61743192	61743257	61743211	61743212	Frame_Shift_Ins	-	C	p.S238fs
LIHC	TCGA-CC-A7IJ-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2137863:2137942:2138048:2138140:2138227:2138326,	2138049	2138140	2138085	2138088	Frame_Shift_Del	TCGT	-	p.1702_1703del
LIHC	TCGA-CC-A7IJ-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604561	179604561	Frame_Shift_Del	C	-	p.A4467fs
LIHC	TCGA-CC-A7IJ-01	TYMP	ENST00000425169.1	chr22	50966940:50967039:50967564:50967767:50967924:50968148,50966016:50966146:50967564:50967767:50967924:50968148,	50967565	50967767	50967719	50967743	Frame_Shift_Del	GTCTCCTCCAGATCCATGCCCCGAA	-	p.80_88del
LIHC	TCGA-DD-AAC8-01	NASP	ENST00000527359.1	chr1	46072188:46072263:46078840:46078920:46079767:46079789,46056894:46056942:46078840:46078920:46079767:46079789,	46078841	46078920	46078848	46078855	Frame_Shift_Del	AGGCTCAG	-	p.478_480del
LIHC	TCGA-DD-A113-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75513372	75513372	Frame_Shift_Del	C	-	p.G996fs
LIHC	TCGA-DD-A3A5-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40794906	40794907	Frame_Shift_Ins	-	T	p.I278fs
LIHC	TCGA-CC-A7IE-01	NCOR2	ENST00000429285.2,ENST00000404621.1	chr12	124911167:124911346:124914158:124914249:124915160:124915187,	124914159	124914249	124914165	124914166	Frame_Shift_Del	CT	-	p.381_382del
LIHC	TCGA-CC-A7IE-01	NCOR2	ENST00000397355.1,ENST00000420698.1,ENST00000404121.2,ENST00000356219.3,ENST00000405201.1,ENST00000458234.1	chr12	124911167:124911346:124914158:124914252:124915160:124915187,	124914159	124914252	124914165	124914166	Frame_Shift_Del	CT	-	p.381_382del
LIHC	TCGA-CC-A7IE-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73956454	73956454	Frame_Shift_Del	T	-	p.H2298fs
LIHC	TCGA-CC-A7IK-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755179	6755180	Frame_Shift_Ins	-	G	p.R215fs
LIHC	TCGA-CC-A7IK-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576866	7576897	Frame_Shift_Del	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	-	p.317_327del
LIHC	TCGA-DD-AADO-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968486	5968487	Frame_Shift_Ins	-	T	p.T582fs
LIHC	TCGA-G3-AAV5-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283386	74283387	Frame_Shift_Del	TG	-	p.476_476del
LIHC	TCGA-G3-AAV5-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000509063.1,ENST00000441319.1	chr4	74272367:74272478:74274310:74274522:74275071:74275204,	74274311	74274522	74274517	74274518	Frame_Shift_Ins	-	A	p.L159fs
LIHC	TCGA-RC-A6M6-01	RGMB	ENST00000504776.1	chr5	98106301:98106377:98109659:98109910:98115283:98115623,	98109660	98109910	98109681	98109682	Frame_Shift_Ins	-	C	p.A10fs
LIHC	TCGA-RC-A6M6-01	RGMB	ENST00000308234.7,ENST00000434027.2	chr5	98106301:98106377:98109656:98109910:98115283:98115623,	98109657	98109910	98109681	98109682	Frame_Shift_Ins	-	C	p.A10fs
LIHC	TCGA-RC-A6M6-01	RABL6	ENST00000436380.1,ENST00000311502.7,ENST00000432842.2,ENST00000357466.2,ENST00000484471.2,ENST00000425121.1,ENST00000371671.4,ENST00000371663.4,ENST00000464941.1	chr9	139720234:139720278:139722945:139722998:139723844:139723936,	139722946	139722998	139722950	139722951	Frame_Shift_Ins	-	AG	p.K106fs
LIHC	TCGA-RC-A6M6-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105997	168105997	Frame_Shift_Del	C	-	p.L2698fs
LIHC	TCGA-RC-A6M6-01	C3	ENST00000599668.1,ENST00000599899.1,ENST00000245907.6	chr19	6677877:6678034:6678162:6678298:6678382:6678466,	6678163	6678298	6678293	6678293	Frame_Shift_Del	C	-	p.D1574fs
LIHC	TCGA-RC-A6M6-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102891	168102891	Frame_Shift_Del	A	-	p.I1663fs
LIHC	TCGA-RC-A6M6-01	LMBR1	ENST00000461469.1,ENST00000540390.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000414218.1,ENST00000454132.1	chr7	156589167:156589186:156619298:156619438:156685621:156685681,156589167:156589186:156619298:156619438:156626446:156626486,	156619299	156619438	156619307	156619308	Frame_Shift_Ins	-	G	p.L104fs
LIHC	TCGA-RC-A6M6-01	KIAA1211L	ENST00000397899.2	chr2	99413830:99414000:99438319:99440000:99443437:99443632,	99438320	99440000	99439712	99439712	Frame_Shift_Del	C	-	p.A342fs
LIHC	TCGA-RC-A6M6-01	EVPL	ENST00000586740.1,ENST00000301607.3	chr17	74014241:74014339:74014526:74014681:74014994:74015141,	74014527	74014681	74014610	74014611	Frame_Shift_Ins	-	CCCT	p.G452fs
LIHC	TCGA-RC-A6M6-01	ABCE1	ENST00000507193.1,ENST00000296577.4	chr4	146031526:146031596:146032119:146032216:146033390:146033480,	146032120	146032216	146032129	146032129	Frame_Shift_Del	A	-	p.H208fs
LIHC	TCGA-RC-A6M6-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150004716	150004717	Frame_Shift_Ins	-	ACACGCATACTTTTCACAGGCTGTTGAATAGG	p.V503_L504delinsVLFNSLX
LIHC	TCGA-ZP-A9D0-01	CCAR1	ENST00000535016.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543225.1	chr10	70481011:70481045:70482211:70482334:70496632:70496667,70480998:70481039:70482211:70482334:70496632:70496667,	70482212	70482334	70482318	70482319	Frame_Shift_Ins	-	A	p.T19fs
LIHC	TCGA-ZP-A9D0-01	NOS3	ENST00000297494.3,ENST00000461406.1,ENST00000477227.1	chr7	150709493:150709560:150710318:150710467:150710811:150711006,	150710319	150710467	150710398	150710405	Frame_Shift_Del	GAACGCCC	-	p.1062_1064del
LIHC	TCGA-DD-AACH-01	FANCB	ENST00000452869.1,ENST00000324138.3,ENST00000398334.1	chrX	14862624:14862862:14862977:14863408:14868626:14868796,	14862978	14863408	14863080	14863093	Frame_Shift_Del	AGTTACCACTTTCT	-	p.605_609del
LIHC	TCGA-DD-AACH-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74285333:74285356:74285970:74286038:74286808:74286910,	74285971	74286038	74286009	74286012	Frame_Shift_Del	CTTA	-	p.608_609del
LIHC	TCGA-DD-AACH-01	TIRAP	ENST00000392680.2,ENST00000479770.1,ENST00000392679.1	chr11	126160750:126160856:126162371:126162950:126163562:126164534,	126162372	126162950	126162932	126162935	Frame_Shift_Del	AAAG	-	p.209_210del
LIHC	TCGA-FV-A496-01	CAPN6	ENST00000324068.1,ENST00000541758.1	chrX	110496235:110496444:110497499:110497631:110506999:110507104,	110497500	110497631	110497516	110497516	Frame_Shift_Del	T	-	p.E94fs
LIHC	TCGA-FV-A496-01	SLC1A1	ENST00000262352.3	chr9	4576568:4576763:4583037:4583172:4585311:4585557,	4583038	4583172	4583118	4583133	Frame_Shift_Del	CCGTGGGCCTGCCCGC	-	p.425_430del
LIHC	TCGA-FV-A496-01	SLC1A1	ENST00000262352.3	chr9	4576568:4576763:4583037:4583172:4585311:4585557,	4583038	4583172	4583116	4583116	Frame_Shift_Del	T	-	p.S424fs
LIHC	TCGA-FV-A496-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579380	7579380	Frame_Shift_Del	A	-	p.Y103fs
LIHC	TCGA-BC-A217-01	SAA1	ENST00000405158.2,ENST00000356524.4,ENST00000532858.1	chr11	18288430:18288525:18290741:18290880:18291263:18291514,	18290742	18290880	18290820	18290820	Frame_Shift_Del	G	-	p.R57fs
LIHC	TCGA-BC-A217-01	SAA2	ENST00000414546.2	chr11	18263685:18264366:18267456:18267595:18269467:18269562,18260769:18261516:18267456:18267595:18269467:18269562,	18267457	18267595	18267513	18267513	Frame_Shift_Del	C	-	p.N59fs
LIHC	TCGA-DD-A3A4-01	H2AFY2	ENST00000455786.1	chr10	71812635:71812756:71835355:71835586:71849815:71849922,	71835356	71835586	71835423	71835423	Frame_Shift_Del	C	-	p.G3fs
LIHC	TCGA-ED-A7PY-01	PPP1R3F	ENST00000466508.1,ENST00000438316.1,ENST00000495799.1,ENST00000376188.1	chrX	49137868:49137924:49138446:49138526:49142295:49142335,	49138447	49138526	49138482	49138483	Frame_Shift_Ins	-	TAGCCCCCACCTGA	p.V367_A368delinsVAPTX
LIHC	TCGA-ED-A7PY-01	PPP1R3F	ENST00000055335.6	chrX	49137868:49137924:49138443:49138526:49142295:49142335,	49138444	49138526	49138482	49138483	Frame_Shift_Ins	-	TAGCCCCCACCTGA	p.V367_A368delinsVAPTX
LIHC	TCGA-DD-A1EH-01	IQCA1	ENST00000309507.5,ENST00000418802.1,ENST00000254653.5	chr2	237289255:237289276:237300618:237300714:237300886:237300993,237289211:237289279:237300618:237300714:237300886:237300993,	237300619	237300714	237300683	237300683	Frame_Shift_Del	T	-	p.N457fs
LIHC	TCGA-DD-A1EH-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125147	12125148	Frame_Shift_Ins	-	A	p.E1707fs
LIHC	TCGA-DD-A1EH-01	DONSON	ENST00000453626.1,ENST00000303071.5,ENST00000432378.1,ENST00000437395.1	chr21	34955793:34955972:34956895:34957074:34958283:34958487,	34956896	34957074	34956952	34956953	Frame_Shift_Ins	-	C	p.G243fs
LIHC	TCGA-DD-A1EH-01	DONSON	ENST00000303113.6	chr21	34955793:34955972:34956895:34957032:34958283:34958487,	34956896	34957032	34956952	34956953	Frame_Shift_Ins	-	C	p.G243fs
LIHC	TCGA-DD-A1EH-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347071	347072	Frame_Shift_Ins	-	G	p.R647fs
LIHC	TCGA-DD-A4NH-01	STAT5B	ENST00000468312.1	chr17	40379606:40379703:40384017:40384155:40428265:40428424,	40384018	40384155	40384099	40384100	Frame_Shift_Ins	-	G	p.H16fs
LIHC	TCGA-BC-A10T-01	MYCT1	ENST00000532295.1	chr6	153019095:153019233:153042876:153043388:153043897:153044419,	153042877	153043388	153043057	153043058	Frame_Shift_Ins	-	C	p.Y126fs
LIHC	TCGA-BC-A10T-01	COL22A1	ENST00000435777.1,ENST00000303045.6	chr8	139890482:139890559:139895324:139895487:139925861:139926236,	139895325	139895487	139895383	139895384	Frame_Shift_Ins	-	C	p.G11fs
LIHC	TCGA-BC-A10T-01	ADCY4	ENST00000310677.4,ENST00000545213.1,ENST00000554781.1,ENST00000554577.1,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24787597:24787774:24787859:24787984:24788303:24788418,	24787860	24787984	24787938	24787939	Frame_Shift_Ins	-	T	p.K1001fs
LIHC	TCGA-DD-AADM-01	CDKAL1	ENST00000378624.4,ENST00000274695.4,ENST00000378610.1	chr6	20781375:20781496:20846305:20846409:20955649:20955816,	20846306	20846409	20846331	20846331	Frame_Shift_Del	A	-	p.C221X
LIHC	TCGA-DD-AADM-01	TRIT1	ENST00000541099.1	chr1	40309867:40309890:40310202:40310312:40312891:40312969,40309867:40309890:40310202:40310312:40348989:40349106,	40310203	40310312	40310251	40310251	Frame_Shift_Del	T	-	p.E357fs
LIHC	TCGA-DD-AADM-01	CCDC50	ENST00000392456.3	chr3	191087707:191087825:191092850:191093378:191097947:191098063,	191092851	191093378	191093078	191093078	Frame_Shift_Del	A	-	p.R225fs
LIHC	TCGA-DD-AADM-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48936988	48936988	Frame_Shift_Del	A	-	p.T252fs
LIHC	TCGA-DD-AADM-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405805	157405805	Frame_Shift_Del	G	-	p.S682fs
LIHC	TCGA-DD-AADM-01	CCDC50	ENST00000392456.3	chr3	191087707:191087825:191092850:191093378:191097947:191098063,	191092851	191093378	191093079	191093080	Frame_Shift_Del	AA	-	p.226_226del
LIHC	TCGA-FV-A3R2-01	TSC1	ENST00000493467.1,ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135785957:135786079:135786388:135786500:135786839:135786955,	135786389	135786500	135786464	135786464	Frame_Shift_Del	T	-	p.T356fs
LIHC	TCGA-DD-AACO-01	FRMD5	ENST00000417257.1,ENST00000421674.1,ENST00000484674.1,ENST00000402883.1,ENST00000449926.1,ENST00000558108.2	chr15	44184178:44184267:44194372:44194460:44198025:44198144,	44194373	44194460	44194417	44194418	Frame_Shift_Ins	-	T	p.A199fs
LIHC	TCGA-DD-AACO-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74285333:74285356:74285970:74286038:74286808:74286910,	74285971	74286038	74286007	74286007	Frame_Shift_Del	G	-	p.L607fs
LIHC	TCGA-DD-AACO-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10599867:10600044:10602252:10602396,10597393:10597494:10599867:10600044:10600323:10600529,	10599868	10600044	10600016	10600019	Frame_Shift_Del	ATAG	-	p.520_521del
LIHC	TCGA-WQ-AB4B-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000510166.1,ENST00000509063.1,ENST00000515133.1,ENST00000441319.1	chr4	74270017:74270123:74272345:74272478:74275071:74275204,74270837:74270890:74272345:74272478:74274310:74274457,	74272346	74272478	74272459	74272459	Frame_Shift_Del	A	-	p.E84fs
LIHC	TCGA-BC-A3KG-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5402280:5402456:5410005:5410995:5413685:5414112,	5410006	5410995	5410486	5410486	Frame_Shift_Del	C	-	p.V1247fs
LIHC	TCGA-BC-A3KG-01	SCAMP5	ENST00000361900.6,ENST00000562327.1,ENST00000562212.1,ENST00000567920.1,ENST00000425597.3,ENST00000564779.1	chr15	75305017:75305146:75308933:75309090:75310137:75310282,75305019:75305146:75308933:75309090:75310210:75310266,	75308934	75309090	75308993	75308993	Frame_Shift_Del	G	-	p.G65fs
LIHC	TCGA-BC-A3KG-01	HNRNPH3	ENST00000469172.1,ENST00000265866.7,ENST00000481819.1,ENST00000441000.2,ENST00000354695.5,ENST00000491200.1	chr10	70100930:70101066:70101341:70101437:70101515:70101608,	70101342	70101437	70101436	70101436	Frame_Shift_Del	G	-	p.M290fs
LIHC	TCGA-BC-A3KG-01	NFASC	ENST00000367171.4,ENST00000367170.4,ENST00000413225.1,ENST00000401399.1,ENST00000367172.4,ENST00000339876.6	chr1	204957791:204957934:204971723:204971876:204978684:204978816,204970297:204970414:204971723:204971876:204978684:204978816,	204971724	204971876	204971735	204971735	Frame_Shift_Del	A	-	p.T1049fs
LIHC	TCGA-BC-A3KG-01	ZMIZ2	ENST00000309315.4,ENST00000441627.1,ENST00000265346.7	chr7	44796023:44796138:44796545:44796748:44796976:44797160,	44796546	44796748	44796547	44796547	Frame_Shift_Del	T	-	p.V56fs
LIHC	TCGA-BC-A10Y-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618408	47618409	Frame_Shift_Ins	-	G	p.C370fs
LIHC	TCGA-BC-A10Y-01	NR3C2	ENST00000355292.3,ENST00000503313.1,ENST00000511528.1,ENST00000344721.4,ENST00000358102.3	chr4	149073619:149073764:149075701:149076052:149115896:149116013,	149075702	149076052	149075987	149075988	Frame_Shift_Ins	-	C	p.P694fs
LIHC	TCGA-CC-5258-01	TFCP2L1	ENST00000464621.1,ENST00000263707.5	chr2	121983137:121983189:121989401:121989544:121991666:121991770,	121989402	121989544	121989435	121989436	Frame_Shift_Ins	-	CC	p.G436fs
LIHC	TCGA-CC-5258-01	COL22A1	ENST00000435777.1,ENST00000303045.6	chr8	139890482:139890559:139895324:139895487:139925861:139926236,	139895325	139895487	139895383	139895384	Frame_Shift_Ins	-	C	p.G11fs
LIHC	TCGA-CC-5258-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001148	11001149	Frame_Shift_Ins	-	C	p.D600fs
LIHC	TCGA-CC-5258-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001148	11001149	Frame_Shift_Ins	-	C	p.D600fs
LIHC	TCGA-CC-5258-01	ZYX	ENST00000449423.2,ENST00000354434.4	chr7	143079340:143079540:143079893:143080415:143085311:143085432,	143079894	143080415	143080154	143080155	Frame_Shift_Ins	-	C	p.G254fs
LIHC	TCGA-CC-5258-01	PTTG1IP	ENST00000397887.3	chr21	46276268:46276279:46281077:46281186:46285309:46285362,46271321:46271542:46281077:46281186:46285309:46285362,	46281078	46281186	46281119	46281120	Frame_Shift_Ins	-	A	p.S79fs
LIHC	TCGA-CC-5258-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56098886	56098887	Frame_Shift_Ins	-	C	p.P126fs
LIHC	TCGA-CC-5258-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577150	7577150	Frame_Shift_Del	T	-	p.N263fs
LIHC	TCGA-CC-5258-01	ASPSCR1	ENST00000344865.6,ENST00000582355.2,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000306739.4	chr17	79953867:79953941:79954295:79954722:79966912:79966915,	79954296	79954722	79954362	79954363	Frame_Shift_Ins	-	G	p.A191fs
LIHC	TCGA-CC-5258-01	DFFB	ENST00000468793.1,ENST00000378209.3,ENST00000477548.1,ENST00000378206.1,ENST00000339350.3,ENST00000475969.1,ENST00000338895.3,ENST00000491998.1,ENST00000481945.1	chr1	3784537:3784617:3786168:3786339:3789035:3789109,	3786169	3786339	3786299	3786300	Frame_Shift_Ins	-	C	p.G214fs
LIHC	TCGA-CC-5258-01	ALOX15B	ENST00000572022.1,ENST00000380183.4,ENST00000571240.1	chr17	7948805:7949004:7949985:7950072:7950224:7950381,	7949986	7950072	7950032	7950032	Frame_Shift_Del	C	-	p.A416fs
LIHC	TCGA-DD-AADP-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097800	27097809	Frame_Shift_Del	TCCAGCCTCC	-	p.1130_1133del
LIHC	TCGA-DD-AADN-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578237	7578238	Frame_Shift_Del	CT	-	p.204_205del
LIHC	TCGA-MI-A75H-01	SAAL1	ENST00000524803.1	chr11	18102957:18103050:18105081:18105278:18108412:18108507,	18105082	18105278	18105155	18105155	Frame_Shift_Del	T	-	p.D389fs
LIHC	TCGA-MI-A75H-01	SAAL1	ENST00000534721.1	chr11	18102957:18103050:18105081:18105256:18108412:18108507,	18105082	18105256	18105155	18105155	Frame_Shift_Del	T	-	p.D389fs
LIHC	TCGA-MI-A75H-01	SAAL1	ENST00000300013.4	chr11	18102957:18103050:18105081:18105275:18108412:18108507,	18105082	18105275	18105155	18105155	Frame_Shift_Del	T	-	p.D389fs
LIHC	TCGA-MI-A75H-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462324	5462325	Frame_Shift_Ins	-	A	p.L564fs
LIHC	TCGA-CC-A8HU-01	ITGB5	ENST00000460797.1,ENST00000296181.4	chr3	124481794:124482565:124483237:124483404:124485072:124485192,	124483238	124483404	124483275	124483275	Frame_Shift_Del	T	-	p.K756fs
LIHC	TCGA-UB-A7MB-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953748	48953748	Frame_Shift_Del	C	-	p.V450fs
LIHC	TCGA-UB-A7MB-01	EML5	ENST00000380664.5,ENST00000554922.1	chr14	89153559:89153671:89154614:89154817:89160650:89160751,	89154615	89154817	89154769	89154769	Frame_Shift_Del	T	-	p.N863fs
LIHC	TCGA-UB-A7MB-01	COL6A3	ENST00000347401.3	chr2	238296224:238296827:238303229:238303847:238305369:238305405,238289779:238290142:238303229:238303847:238305369:238305460,	238303230	238303847	238303641	238303641	Frame_Shift_Del	G	-	p.Q100fs
LIHC	TCGA-UB-A7MB-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196712581:196712758:196714946:196715129:196716240:196716634,	196714947	196715129	196714988	196714988	Frame_Shift_Del	G	-	p.N1117fs
LIHC	TCGA-UB-A7MB-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000538174.2	chr12	70980786:70981047:70983743:70984013:70986061:70986325,	70983744	70984013	70983979	70983979	Frame_Shift_Del	A	-	p.N606fs
LIHC	TCGA-DD-AAVW-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819555	214819558	Frame_Shift_Del	TCTG	-	p.2214_2215del
LIHC	TCGA-DD-AAVW-01	LSS	ENST00000464357.1,ENST00000356396.4,ENST00000450351.1,ENST00000457828.2,ENST00000397728.3,ENST00000522411.1	chr21	47642576:47642652:47647465:47647604:47648347:47648513,	47647466	47647604	47647474	47647475	Frame_Shift_Ins	-	T	p.L104fs
LIHC	TCGA-G3-A7M5-01	CNNM1	ENST00000370528.3,ENST00000356713.4,ENST00000446890.1	chr10	101124173:101124273:101124711:101124759:101136811:101136975,	101124712	101124759	101124744	101124744	Frame_Shift_Del	G	-	p.A720fs
LIHC	TCGA-G3-A7M5-01	BTBD8	ENST00000342818.3,ENST00000540648.1	chr1	92546094:92546277:92554254:92554452:92568029:92568226,	92554255	92554452	92554445	92554445	Frame_Shift_Del	T	-	p.T113fs
LIHC	TCGA-G3-A7M5-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34105667:34105780:34109062:34109159:34110778:34110885,	34109063	34109159	34109120	34109120	Frame_Shift_Del	G	-	p.E3520fs
LIHC	TCGA-G3-A7M5-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496721	15496722	Frame_Shift_Ins	-	G	p.V422fs
LIHC	TCGA-G3-A7M5-01	FCRL2	ENST00000368181.4	chr1	157736644:157736761:157740198:157740456:157745564:157745585,	157740199	157740456	157740434	157740434	Frame_Shift_Del	G	-	p.S26fs
LIHC	TCGA-G3-A7M5-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47565791:47565861:47566179:47566241:47570032:47570164,	47566180	47566241	47566181	47566181	Frame_Shift_Del	C	-	p.E323fs
LIHC	TCGA-G3-A7M5-01	SAMD11	ENST00000342066.3,ENST00000455979.1,ENST00000341065.4	chr1	877789:877868:877938:878438:878632:878757,	877939	878438	878348	878348	Frame_Shift_Del	G	-	p.A491fs
LIHC	TCGA-DD-AADR-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745169	17745169	Frame_Shift_Del	A	-	p.P960fs
LIHC	TCGA-DD-AAE7-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000557654.1,ENST00000553936.1	chr14	67243181:67243239:67291191:67291284:67309395:67309434,67243181:67243239:67291191:67291284:67346656:67346750,	67291192	67291284	67291253	67291253	Frame_Shift_Del	C	-	p.T88fs
LIHC	TCGA-DD-AAE7-01	IMPA1	ENST00000449740.2	chr8	82593732:82593819:82597997:82598198:82598486:82598517,	82597998	82598198	82598039	82598046	Frame_Shift_Del	CTGTTTCT	-	p.36_38del
LIHC	TCGA-FV-A3I1-01	CYP4A22	ENST00000485117.1,ENST00000294337.3,ENST00000371891.3	chr1	47608940:47609065:47609433:47609588:47610028:47610135,	47609434	47609588	47609480	47609481	Frame_Shift_Ins	-	T	p.V228fs
LIHC	TCGA-BD-A2L6-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629104	18629105	Frame_Shift_Ins	-	A	p.F121fs
LIHC	TCGA-CC-5263-01	CEP85	ENST00000252992.4,ENST00000476272.2	chr1	26566252:26566329:26570656:26570809:26581661:26581841,	26570657	26570809	26570728	26570729	Frame_Shift_Ins	-	G	p.R43fs
LIHC	TCGA-CC-5263-01	CRELD2	ENST00000404488.3	chr22	50315232:50315409:50315944:50316091:50316259:50316351,	50315945	50316091	50315943	50315980	Frame_Shift_Del	CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG	-	p.198_207del
LIHC	TCGA-DD-AAEK-01	CHST10	ENST00000421474.1,ENST00000264249.3,ENST00000542617.1,ENST00000420858.1,ENST00000409701.1,ENST00000448989.1,ENST00000409046.1	chr2	101014541:101014604:101019025:101019117:101023037:101023169,	101019026	101019117	101019079	101019080	Frame_Shift_Ins	-	GG	p.M47fs
LIHC	TCGA-DD-AAEK-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149699603	149699604	Frame_Shift_Ins	-	A	p.N184fs
LIHC	TCGA-DD-AACU-01	FANCM	ENST00000267430.5,ENST00000555013.1,ENST00000554809.1,ENST00000542564.2,ENST00000556250.1	chr14	45650632:45650727:45650839:45650908:45652976:45653105,	45650840	45650908	45650891	45650891	Frame_Shift_Del	A	-	p.R1456fs
LIHC	TCGA-K7-A6G5-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283386	74283387	Frame_Shift_Del	TG	-	p.476_476del
LIHC	TCGA-K7-A6G5-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74283982:74284028:74285223:74285356:74286808:74286910,74284016:74284028:74285223:74285356:74285970:74286038,	74285224	74285356	74285295	74285296	Frame_Shift_Ins	-	C	p.F575fs
LIHC	TCGA-NI-A4U2-01	HMGCR	ENST00000511206.1,ENST00000287936.4	chr5	74650331:74650522:74650880:74651039:74651189:74651347,	74650881	74651039	74651018	74651018	Frame_Shift_Del	T	-	p.N567fs
LIHC	TCGA-NI-A4U2-01	HMGCR	ENST00000511206.1,ENST00000287936.4	chr5	74650331:74650522:74650880:74651039:74651189:74651347,	74650881	74651039	74651021	74651022	Frame_Shift_Ins	-	CAAGA	p.R568fs
LIHC	TCGA-BC-A10R-01	CLASP1	ENST00000541377.1	chr2	122187648:122187753:122203024:122203072:122204912:122205083,	122203025	122203072	122203068	122203068	Frame_Shift_Del	G	-	p.S639fs
LIHC	TCGA-BC-A10R-01	ARFGAP2	ENST00000525398.1,ENST00000524727.1,ENST00000528041.1	chr11	47195012:47195033:47195309:47195433:47196565:47196649,	47195310	47195433	47195386	47195387	Frame_Shift_Ins	-	G	p.R162fs
LIHC	TCGA-BC-A10R-01	ARFGAP2	ENST00000395449.3,ENST00000525314.1,ENST00000524782.1,ENST00000527097.1	chr11	47195012:47195033:47195309:47195391:47196565:47196649,	47195310	47195391	47195386	47195387	Frame_Shift_Ins	-	G	p.R162fs
LIHC	TCGA-BC-A10R-01	ARFGAP2	ENST00000528444.1	chr11	47195012:47195033:47195309:47195466:47196565:47196649,	47195310	47195466	47195386	47195387	Frame_Shift_Ins	-	G	p.R162fs
LIHC	TCGA-BC-A10S-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818826	214818826	Frame_Shift_Del	A	-	p.S1971fs
LIHC	TCGA-BC-A10S-01	CAPN14	ENST00000444918.2,ENST00000403897.3,ENST00000398824.2	chr2	31399452:31399508:31399891:31400008:31400611:31400684,	31399892	31400008	31399956	31399957	Frame_Shift_Ins	-	C	p.A636fs
LIHC	TCGA-BC-A10S-01	BIRC6	ENST00000421745.2	chr2	32688261:32688449:32689576:32689891:32690132:32690232,	32689577	32689891	32689681	32689682	Frame_Shift_Ins	-	G	p.AP1682fs
LIHC	TCGA-BC-A10S-01	TMEM182	ENST00000486293.1	chr2	103380787:103380886:103414321:103414459:103431206:103431563,103380787:103380886:103414321:103414459:103459870:103460352,	103414322	103414459	103414409	103414410	Frame_Shift_Ins	-	C	p.C140fs
LIHC	TCGA-BC-A10S-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000261023.3	chr2	187540546:187540654:187541539:187541662:187541923:187542168,	187541540	187541662	187541638	187541639	Frame_Shift_Ins	-	G	p.AF1009fs
LIHC	TCGA-BC-A10S-01	ZMYND10	ENST00000442887.1,ENST00000360165.3,ENST00000231749.3	chr3	50380548:50380637:50380737:50380875:50380993:50381047,	50380738	50380875	50380783	50380784	Frame_Shift_Ins	-	C	p.G155fs
LIHC	TCGA-BC-A10S-01	LETM1	ENST00000302787.2	chr4	1821098:1821199:1823907:1824039:1824714:1824858,	1823908	1824039	1823987	1823988	Frame_Shift_Ins	-	C	p.A510fs
LIHC	TCGA-BC-A10S-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167836926:167837000:167841352:167841595:167849012:167849053,	167841353	167841595	167841541	167841542	Frame_Shift_Ins	-	G	p.R377fs
LIHC	TCGA-BC-A10S-01	SCIN	ENST00000445618.2,ENST00000297029.5,ENST00000519209.1	chr7	12679971:12680142:12683762:12683940:12684208:12684330,	12683763	12683940	12683813	12683814	Frame_Shift_Ins	-	C	p.A545fs
LIHC	TCGA-BC-A10S-01	ZBTB10	ENST00000430430.1	chr8	81397901:81398118:81398483:81400017:81411728:81412617,	81398484	81400017	81399865	81399866	Frame_Shift_Ins	-	G	p.V274fs
LIHC	TCGA-BC-A10S-01	NSMCE2	ENST00000522563.1	chr8	126104120:126104200:126114558:126114729:126163412:126163519,	126114559	126114729	126114663	126114664	Frame_Shift_Ins	-	A	p.S31fs
LIHC	TCGA-BC-A10S-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16435744	16435745	Frame_Shift_Ins	-	C	p.T816fs
LIHC	TCGA-BC-A10S-01	HABP4	ENST00000375251.3,ENST00000466976.1,ENST00000375249.4	chr9	99246743:99246915:99250370:99250556:99252263:99253618,	99250371	99250556	99250415	99250416	Frame_Shift_Ins	-	C	p.R349fs
LIHC	TCGA-BC-A10S-01	CTSV	ENST00000538255.1,ENST00000259470.5	chr9	99797809:99797975:99798804:99799029:99799533:99799680,	99798805	99799029	99798872	99798873	Frame_Shift_Ins	-	T	p.G185fs
LIHC	TCGA-BC-A10S-01	SLC25A25	ENST00000373069.5,ENST00000373064.5,ENST00000373066.5,ENST00000433501.1,ENST00000432073.2,ENST00000373068.2	chr9	130868007:130868160:130868428:130868536:130868631:130868799,	130868429	130868536	130868488	130868489	Frame_Shift_Ins	-	G	p.V319fs
LIHC	TCGA-BC-A10S-01	CLSTN3	ENST00000539982.1,ENST00000534830.1,ENST00000537408.1,ENST00000266546.6,ENST00000541953.1,ENST00000545663.1,ENST00000535452.1	chr12	7285619:7285742:7286168:7286364:7287922:7287941,	7286169	7286364	7286327	7286328	Frame_Shift_Ins	-	A	p.G128fs
LIHC	TCGA-BC-A10S-01	ARHGEF25	ENST00000477314.1	chr12	58010165:58010278:58010566:58011071:58013093:58013162,	58010567	58011071	58010627	58010628	Frame_Shift_Ins	-	C	p.P565fs
LIHC	TCGA-BC-A10S-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624320	117624320	Frame_Shift_Del	A	-	p.F144fs
LIHC	TCGA-BC-A10S-01	BCL11B	ENST00000345514.2	chr14	99640297:99642532:99723807:99724176:99737497:99737565,	99723808	99724176	99723903	99723904	Frame_Shift_Ins	-	C	p.A111fs
LIHC	TCGA-BC-A10S-01	FBN1	ENST00000561429.1,ENST00000316623.5,ENST00000559133.1	chr15	48703397:48703576:48704765:48704940:48707732:48707964,	48704766	48704940	48704823	48704824	Frame_Shift_Ins	-	T	p.S2723fs
LIHC	TCGA-BC-A10S-01	GAA	ENST00000302262.3,ENST00000390015.3	chr17	78083743:78083854:78084525:78084639:78084739:78084824,	78084526	78084639	78084529	78084529	Frame_Shift_Del	T	-	p.W481fs
LIHC	TCGA-BC-A10S-01	LAMA1	ENST00000492048.1,ENST00000488064.1,ENST00000389658.3,ENST00000579014.1	chr18	6941946:6942238:6943178:6943401:6947161:6947295,	6943179	6943401	6943341	6943342	Frame_Shift_Ins	-	G	p.H2969fs
LIHC	TCGA-BC-A10S-01	DIP2A	ENST00000466639.1	chr21	47916900:47917020:47918494:47918746:47924270:47924402,47916900:47917020:47918494:47918746:47924273:47924402,47916900:47917020:47918494:47918746:47929169:47929289,	47918495	47918746	47918698	47918699	Frame_Shift_Ins	-	C	p.R203fs
LIHC	TCGA-BC-A10S-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77276441:77276576:77284746:77284941:77286897:77287080,	77284747	77284941	77284798	77284799	Frame_Shift_Ins	-	A	p.S990fs
LIHC	TCGA-BC-A10T-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
LIHC	TCGA-BC-A10T-01	CHI3L2	ENST00000369744.2,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000369748.4	chr1	111778645:111778775:111781371:111781554:111783948:111784065,	111781372	111781554	111781486	111781487	Frame_Shift_Ins	-	C	p.P284fs
LIHC	TCGA-BC-A10T-01	NID1	ENST00000264187.6	chr1	236156944:236157172:236175220:236175343:236176710:236176860,	236175221	236175343	236175322	236175323	Frame_Shift_Ins	-	T	p.P809fs
LIHC	TCGA-BC-A10T-01	MEIS1	ENST00000542964.1	chr2	66691240:66691352:66739280:66739426:66775074:66775151,66723157:66723332:66739280:66739426:66775074:66775151,	66739281	66739426	66739382	66739383	Frame_Shift_Ins	-	T	p.S282fs
LIHC	TCGA-BC-A10T-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000261023.3	chr2	187540546:187540654:187541539:187541662:187541923:187542168,	187541540	187541662	187541638	187541639	Frame_Shift_Ins	-	G	p.AF1009fs
LIHC	TCGA-BC-A10T-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189863399:189863444:189864010:189864109:189864195:189864303,	189864011	189864109	189864055	189864056	Frame_Shift_Ins	-	G	p.AG689fs
LIHC	TCGA-BC-A10T-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559432	210559433	Frame_Shift_Ins	-	T	p.A847fs
LIHC	TCGA-BC-A10T-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559432	210559433	Frame_Shift_Ins	-	T	p.A847fs
LIHC	TCGA-BC-A10T-01	ULK4	ENST00000301831.4	chr3	41288097:41288483:41290979:41291065:41439569:41439755,	41290980	41291065	41290992	41290993	Frame_Shift_Ins	-	C	p.P1251fs
LIHC	TCGA-BC-A10T-01	LRIG1	ENST00000383703.3,ENST00000273261.3,ENST00000496559.2,ENST00000495037.1	chr3	66436404:66436725:66444463:66444627:66448535:66448607,	66444464	66444627	66444578	66444579	Frame_Shift_Ins	-	C	p.LP475fs
LIHC	TCGA-BC-A10T-01	NIPAL4	ENST00000435489.2	chr5	156890101:156890341:156895729:156895820:156898664:156898825,	156895730	156895820	156895734	156895735	Frame_Shift_Ins	-	G	p.W176fs
LIHC	TCGA-BC-A10T-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000423325.2,ENST00000346162.6	chr6	35803204:35803265:35806113:35806206:35810311:35810381,	35806114	35806206	35806145	35806146	Frame_Shift_Ins	-	C	p.E584fs
LIHC	TCGA-BC-A10T-01	EFHC1	ENST00000480623.1,ENST00000371068.5,ENST00000538167.1	chr6	52288743:52288965:52303101:52303389:52317485:52317635,	52303102	52303389	52303277	52303278	Frame_Shift_Ins	-	A	p.R154fs
LIHC	TCGA-BC-A10T-01	LATS1	ENST00000392273.3	chr6	150016209:150016357:150022914:150023402:150038984:150039170,	150022915	150023402	150023206	150023207	Frame_Shift_Ins	-	G	p.R19fs
LIHC	TCGA-BC-A10T-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107571801:107571945:107572618:107572822:107575859:107576101,	107572619	107572822	107572771	107572772	Frame_Shift_Ins	-	C	p.K1438fs
LIHC	TCGA-BC-A10T-01	LAMB1	ENST00000474380.1	chr7	107571801:107571945:107572618:107572938:107575859:107576101,	107572619	107572938	107572771	107572772	Frame_Shift_Ins	-	C	p.K1438fs
LIHC	TCGA-BC-A10T-01	ERLIN2	ENST00000519872.1,ENST00000523887.1,ENST00000276461.5	chr8	37594144:37594196:37595425:37595547:37597882:37597964,	37595426	37595547	37595467	37595468	Frame_Shift_Ins	-	G	p.G10fs
LIHC	TCGA-BC-A10T-01	MAL2	ENST00000276681.6,ENST00000522112.2,ENST00000521748.1,ENST00000531508.1,ENST00000534619.1	chr8	120233826:120233997:120252404:120252560:120255656:120255762,	120252405	120252560	120252512	120252513	Frame_Shift_Ins	-	C	p.A138fs
LIHC	TCGA-BC-A10T-01	NSMCE2	ENST00000522563.1	chr8	126104120:126104200:126114558:126114729:126163412:126163519,	126114559	126114729	126114663	126114664	Frame_Shift_Ins	-	A	p.S31fs
LIHC	TCGA-BC-A10T-01	MELK	ENST00000536860.1,ENST00000545008.1,ENST00000495529.1,ENST00000298048.2,ENST00000541717.1,ENST00000489766.1	chr9	36581640:36581736:36583623:36583709:36589532:36589649,	36583624	36583709	36583647	36583648	Frame_Shift_Ins	-	C	p.L28fs
LIHC	TCGA-BC-A10T-01	TNC	ENST00000341037.4	chr9	117822133:117822281:117826074:117826347:117826925:117827191,	117826075	117826347	117826154	117826155	Frame_Shift_Ins	-	G	p.G1227fs
LIHC	TCGA-BC-A10T-01	GRID1	ENST00000327946.7,ENST00000536331.1	chr10	87373163:87373404:87379623:87379790:87406958:87407154,	87379624	87379790	87379650	87379651	Frame_Shift_Ins	-	C	p.T778fs
LIHC	TCGA-BC-A10T-01	NR1H3	ENST00000436029.1,ENST00000461778.1	chr11	47279551:47279680:47280651:47280810:47281341:47281374,	47280652	47280810	47280781	47280782	Frame_Shift_Ins	-	G	p.R5fs
LIHC	TCGA-BC-A10T-01	NR1H3	ENST00000420369.1	chr11	47270506:47270550:47280730:47280810:47281341:47281374,47279656:47279716:47280730:47280810:47281341:47281374,47279551:47279680:47280730:47280810:47281341:47281374,47279551:47279680:47280730:47280810:47281336:47281530,	47280731	47280810	47280781	47280782	Frame_Shift_Ins	-	G	p.R5fs
LIHC	TCGA-BC-A10T-01	NR1H3	ENST00000437276.1	chr11	47279656:47279716:47280735:47280810:47281341:47281374,	47280736	47280810	47280781	47280782	Frame_Shift_Ins	-	G	p.R5fs
LIHC	TCGA-BC-A10T-01	EHD1	ENST00000359393.2,ENST00000320631.3,ENST00000433803.1,ENST00000421510.1	chr11	64622793:64622958:64627395:64627808:64641892:64641990,	64627396	64627808	64627400	64627401	Frame_Shift_Ins	-	C	p.Q304fs
LIHC	TCGA-BC-A10T-01	GRAMD1B	ENST00000529750.1,ENST00000532581.1,ENST00000450171.2,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123479366:123479510:123480502:123480621:123480903:123481046,	123480503	123480621	123480598	123480599	Frame_Shift_Ins	-	C	p.C442fs
LIHC	TCGA-BC-A10T-01	ARHGEF25	ENST00000477314.1	chr12	58010165:58010278:58010566:58011071:58013093:58013162,	58010567	58011071	58010627	58010628	Frame_Shift_Ins	-	C	p.P565fs
LIHC	TCGA-BC-A10T-01	TMEM120B	ENST00000449592.2,ENST00000540377.1,ENST00000342607.6	chr12	122211326:122211419:122212563:122212628:122212967:122213036,	122212564	122212628	122212587	122212588	Frame_Shift_Ins	-	G	p.G266fs
LIHC	TCGA-BC-A10T-01	COG7	ENST00000307149.5	chr16	23445956:23446039:23453797:23453966:23456368:23456485,	23453798	23453966	23453841	23453842	Frame_Shift_Ins	-	A	p.R187fs
LIHC	TCGA-BC-A10T-01	LAMA1	ENST00000492048.1,ENST00000488064.1,ENST00000389658.3,ENST00000579014.1	chr18	6941946:6942238:6943178:6943401:6947161:6947295,	6943179	6943401	6943341	6943342	Frame_Shift_Ins	-	G	p.H2969fs
LIHC	TCGA-BC-A10T-01	JAK3	ENST00000527031.1,ENST00000534444.1,ENST00000458235.1,ENST00000526008.1,ENST00000527670.1	chr19	17954188:17954300:17954585:17954709:17955042:17955187,	17954586	17954709	17954641	17954642	Frame_Shift_Ins	-	C	p.P85fs
LIHC	TCGA-BC-A10T-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745303	17745304	Frame_Shift_Ins	-	A	p.*1005fs
LIHC	TCGA-BC-A10U-01	WDR3	ENST00000349139.5	chr1	118472390:118472405:118475910:118476113:118477095:118477305,	118475911	118476113	118476003	118476004	Frame_Shift_Ins	-	G	p.P21fs
LIHC	TCGA-BC-A10U-01	RMDN2	ENST00000407257.1,ENST00000234195.3	chr2	38177653:38177738:38178375:38179344:38201182:38201357,	38178376	38179344	38178783	38178783	Frame_Shift_Del	T	-	p.I142fs
LIHC	TCGA-BC-A10U-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000261023.3	chr2	187540546:187540654:187541539:187541662:187541923:187542168,	187541540	187541662	187541638	187541639	Frame_Shift_Ins	-	G	p.AF1009fs
LIHC	TCGA-BC-A10U-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266132	41266133	Frame_Shift_Ins	-	C	p.F44fs
LIHC	TCGA-BC-A10U-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000450969.1,ENST00000441708.1,ENST00000396183.3,ENST00000431914.1,ENST00000405570.1	chr3	41265511:41265572:41266016:41266244:41266444:41266503,	41266017	41266244	41266138	41266138	Frame_Shift_Del	T	-	p.S45fs
LIHC	TCGA-BC-A10U-01	HMGCR	ENST00000511206.1,ENST00000287936.4	chr5	74650331:74650522:74650880:74651039:74651189:74651347,	74650881	74651039	74650940	74650941	Frame_Shift_Ins	-	G	p.T542fs
LIHC	TCGA-BC-A10U-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899174	133899175	Frame_Shift_Ins	-	A	p.A520fs
LIHC	TCGA-BC-A10U-01	VIM	ENST00000487938.1,ENST00000544301.1,ENST00000224237.5	chr10	17276691:17276817:17277167:17277388:17277844:17277888,	17277168	17277388	17277290	17277291	Frame_Shift_Ins	-	C	p.S378fs
LIHC	TCGA-BC-A10U-01	MICU2	ENST00000382374.4	chr13	22070190:22070299:22077064:22077236:22084142:22084240,	22077065	22077236	22077135	22077136	Frame_Shift_Ins	-	AT	p.F288fs
LIHC	TCGA-BC-A10U-01	COG7	ENST00000307149.5	chr16	23445956:23446039:23453797:23453966:23456368:23456485,	23453798	23453966	23453841	23453842	Frame_Shift_Ins	-	A	p.R187fs
LIHC	TCGA-BC-A10Z-01	SPINK5	ENST00000398454.1,ENST00000256084.7,ENST00000359874.3	chr5	147499857:147499954:147503395:147503523:147504327:147504400,	147503396	147503523	147503432	147503432	Frame_Shift_Del	G	-	p.G859fs
LIHC	TCGA-BC-A10Z-01	IYD	ENST00000392255.3,ENST00000392256.2,ENST00000500320.3,ENST00000425615.3,ENST00000367335.3,ENST00000229447.5,ENST00000344419.3	chr6	150710487:150710679:150713480:150713640:150715234:150715391,	150713481	150713640	150713484	150713493	Frame_Shift_Del	CAGCCCCGAG	-	p.TAPS125fs
LIHC	TCGA-BC-A10Z-01	AP3M2	ENST00000517865.1,ENST00000521280.1,ENST00000396926.3,ENST00000174653.3,ENST00000517922.1,ENST00000530375.1,ENST00000521899.1,ENST00000518421.1	chr8	42019798:42019936:42022588:42022674:42022944:42023078,	42022589	42022674	42022613	42022614	Frame_Shift_Ins	-	G	p.R203fs
LIHC	TCGA-BC-A110-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977650	99977650	Frame_Shift_Del	A	-	p.K99fs
LIHC	TCGA-BC-A112-01	ATAD3A	ENST00000378756.3,ENST00000378755.5,ENST00000536055.1,ENST00000339113.4	chr1	1455927:1455997:1458123:1458279:1458890:1458947,	1458124	1458279	1458269	1458270	Frame_Shift_Ins	-	C	p.P347fs
LIHC	TCGA-BC-A112-01	VPS13D	ENST00000356315.4,ENST00000460333.1,ENST00000487188.1,ENST00000011700.6,ENST00000358136.3	chr1	12383762:12383837:12387704:12387911:12389885:12389975,	12387705	12387911	12387726	12387727	Frame_Shift_Ins	-	T	p.M2671fs
LIHC	TCGA-BC-A112-01	CELA2A	ENST00000359621.4	chr1	15788055:15788153:15789227:15789356:15789880:15790017,	15789228	15789356	15789278	15789279	Frame_Shift_Ins	-	G	p.G93fs
LIHC	TCGA-BC-A112-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16091458:16091728:16093870:16094058:16095022:16095125,	16093871	16094058	16094029	16094030	Frame_Shift_Ins	-	A	p.P137fs
LIHC	TCGA-BC-A112-01	SPEN	ENST00000442985.1,ENST00000375759.3	chr1	16245420:16245546:16245898:16246012:16247364:16247401,	16245899	16246012	16245903	16245904	Frame_Shift_Ins	-	T	p.V509fs
LIHC	TCGA-BC-A112-01	SZRD1	ENST00000475554.1,ENST00000472351.1,ENST00000401088.4	chr1	16693759:16693803:16719722:16719977:16721532:16721565,16717869:16717919:16719722:16719977:16721532:16721565,	16719723	16719977	16719786	16719787	Frame_Shift_Ins	-	C	p.GP55fs
LIHC	TCGA-BC-A112-01	SZRD1	ENST00000375590.3,ENST00000492354.1	chr1	16717869:16717919:16719725:16719977:16721532:16721565,16693759:16693803:16719725:16719977:16721532:16721565,	16719726	16719977	16719786	16719787	Frame_Shift_Ins	-	C	p.GP55fs
LIHC	TCGA-BC-A112-01	NBPF1	ENST00000287968.8,ENST00000392963.5,ENST00000430580.2,ENST00000432949.1	chr1	16899636:16899688:16900981:16901187:16901651:16901724,	16900982	16901187	16901074	16901075	Frame_Shift_Ins	-	T	p.Q769fs
LIHC	TCGA-BC-A112-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268245	21268246	Frame_Shift_Ins	-	A	p.F418fs
LIHC	TCGA-BC-A112-01	HNRNPR	ENST00000374616.3,ENST00000478691.1	chr1	23640091:23640195:23644975:23645190:23648020:23648156,	23644976	23645190	23645135	23645136	Frame_Shift_Ins	-	T	p.K188fs
LIHC	TCGA-BC-A112-01	HNRNPR	ENST00000606561.1,ENST00000302271.6,ENST00000374612.1,ENST00000463552.1,ENST00000427764.2,ENST00000470941.1,ENST00000426846.2	chr1	23640091:23640195:23644975:23645181:23648020:23648156,	23644976	23645181	23645135	23645136	Frame_Shift_Ins	-	T	p.K188fs
LIHC	TCGA-BC-A112-01	WASF2	ENST00000430629.2	chr1	27734690:27734840:27736185:27736700:27739065:27739221,	27736186	27736700	27736316	27736317	Frame_Shift_Ins	-	G	p.P403fs
LIHC	TCGA-BC-A112-01	THEMIS2	ENST00000373925.1	chr1	28203194:28203239:28206154:28206565:28208481:28208588,28203194:28203239:28206154:28206565:28211805:28211928,	28206155	28206565	28206396	28206397	Frame_Shift_Ins	-	C	p.LP159fs
LIHC	TCGA-BC-A112-01	EPB41	ENST00000347529.3	chr1	29313959:29314417:29319841:29320054:29323726:29323831,29313959:29314417:29319841:29320054:29338376:29338419,	29319842	29320054	29319945	29319946	Frame_Shift_Ins	-	A	p.*191fs
LIHC	TCGA-BC-A112-01	RBBP4	ENST00000458695.2,ENST00000414241.3,ENST00000401893.3,ENST00000445722.2,ENST00000373493.5,ENST00000373485.1	chr1	33117517:33117662:33123027:33123173:33133825:33133882,	33123028	33123173	33123042	33123043	Frame_Shift_Ins	-	T	p.V60fs
LIHC	TCGA-BC-A112-01	PHC2	ENST00000486897.1,ENST00000485928.1	chr1	33796964:33797063:33797875:33798005:33799785:33799891,	33797876	33798005	33797978	33797979	Frame_Shift_Ins	-	C	p.S596fs
LIHC	TCGA-BC-A112-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35835980	35835981	Frame_Shift_Ins	-	T	p.D312fs
LIHC	TCGA-BC-A112-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798268	39798269	Frame_Shift_Ins	-	A	p.Q2003fs
LIHC	TCGA-BC-A112-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798446	39798447	Frame_Shift_Ins	-	A	p.GK2062fs
LIHC	TCGA-BC-A112-01	NFYC	ENST00000372669.4,ENST00000372654.1,ENST00000308733.5,ENST00000440226.3,ENST00000414185.1,ENST00000425457.2,ENST00000456393.2,ENST00000372652.1,ENST00000447388.3,ENST00000427410.2,ENST00000372651.1	chr1	41218884:41218918:41223792:41223966:41228559:41228633,	41223793	41223966	41223881	41223882	Frame_Shift_Ins	-	C	p.A159fs
LIHC	TCGA-BC-A112-01	TIE1	ENST00000473014.1	chr1	43779448:43779639:43782869:43783743:43784905:43785019,	43782870	43783743	43783325	43783326	Frame_Shift_Ins	-	G	p.R904fs
LIHC	TCGA-BC-A112-01	OSBPL9	ENST00000435274.2	chr1	52117662:52117713:52135105:52135486:52179674:52179751,	52135106	52135486	52135182	52135183	Frame_Shift_Ins	-	G	p.R98fs
LIHC	TCGA-BC-A112-01	OSBPL9	ENST00000453295.1	chr1	52117662:52117713:52135105:52135184:52179674:52179751,52082785:52082893:52135105:52135184:52179674:52179751,	52135106	52135184	52135182	52135183	Frame_Shift_Ins	-	G	p.R98fs
LIHC	TCGA-BC-A112-01	NDC1	ENST00000371429.3,ENST00000540001.1,ENST00000537333.1,ENST00000234725.8	chr1	54262420:54262477:54262571:54262817:54266365:54266521,	54262572	54262817	54262791	54262792	Frame_Shift_Ins	-	T	p.N*416fs
LIHC	TCGA-BC-A112-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62739837	62739838	Frame_Shift_Ins	-	G	p.P313fs
LIHC	TCGA-BC-A112-01	LEPR	ENST00000344610.8,ENST00000406510.3,ENST00000462765.1,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66031228:66031288:66036155:66036485:66038008:66038132,	66036156	66036485	66036372	66036373	Frame_Shift_Ins	-	T	p.I86fs
LIHC	TCGA-BC-A112-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147728	67147729	Frame_Shift_Ins	-	A	p.K331fs
LIHC	TCGA-BC-A112-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147735	67147736	Frame_Shift_Ins	-	G	p.G333fs
LIHC	TCGA-BC-A112-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147773	67147774	Frame_Shift_Ins	-	C	p.P346fs
LIHC	TCGA-BC-A112-01	ANKRD13C	ENST00000498735.1	chr1	70771906:70771973:70781163:70781249:70790535:70790640,	70781164	70781249	70781193	70781194	Frame_Shift_Ins	-	T	p.T212fs
LIHC	TCGA-BC-A112-01	LRRIQ3	ENST00000395089.1,ENST00000415760.1,ENST00000354431.4	chr1	74621416:74621550:74648221:74648545:74649119:74649178,	74648222	74648545	74648494	74648495	Frame_Shift_Ins	-	T	p.NT100fs
LIHC	TCGA-BC-A112-01	CLCA4	ENST00000370563.3,ENST00000263723.5	chr1	87025614:87025755:87025893:87026041:87029343:87029452,	87025894	87026041	87026012	87026013	Frame_Shift_Ins	-	A	p.E140fs
LIHC	TCGA-BC-A112-01	GTF2B	ENST00000448623.1	chr1	89318906:89319029:89323055:89323170:89325564:89325694,	89323056	89323170	89323082	89323083	Frame_Shift_Ins	-	A	p.Y208fs
LIHC	TCGA-BC-A112-01	GTF2B	ENST00000370500.5	chr1	89318906:89319029:89322888:89323170:89325564:89325694,	89322889	89323170	89323082	89323083	Frame_Shift_Ins	-	A	p.Y208fs
LIHC	TCGA-BC-A112-01	GBP3	ENST00000235878.5,ENST00000370481.4,ENST00000493594.2	chr1	89477510:89477710:89478867:89479110:89479765:89479962,	89478868	89479110	89479039	89479040	Frame_Shift_Ins	-	T	p.F233fs
LIHC	TCGA-BC-A112-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404247	91404248	Frame_Shift_Ins	-	T	p.I888fs
LIHC	TCGA-BC-A112-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93142714:93142775:93159358:93159456:93159855:93159945,	93159359	93159456	93159445	93159446	Frame_Shift_Ins	-	T	p.S381fs
LIHC	TCGA-BC-A112-01	NTNG1	ENST00000370061.3	chr1	107973371:107973539:107979286:107979421:108023232:108023462,107961201:107961267:107979286:107979421:108023232:108023462,	107979287	107979421	107979395	107979396	Frame_Shift_Ins	-	C	p.E455fs
LIHC	TCGA-BC-A112-01	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110086397	110086398	Frame_Shift_Ins	-	C	p.TP251fs
LIHC	TCGA-BC-A112-01	SLC16A4	ENST00000369781.4,ENST00000461647.2	chr1	110921565:110921978:110923603:110923765:110924273:110924417,110921565:110921978:110923603:110923765:110931858:110931977,110919571:110919783:110923603:110923765:110924273:110924417,	110923604	110923765	110923749	110923750	Frame_Shift_Ins	-	A	p.F127fs
LIHC	TCGA-BC-A112-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115222309:115222329:115222879:115223099:115226819:115226985,	115222880	115223099	115222906	115222907	Frame_Shift_Ins	-	A	p.S276fs
LIHC	TCGA-BC-A112-01	WARS2	ENST00000495746.1,ENST00000235521.4	chr1	119588204:119588285:119618972:119619230:119683177:119683261,	119618973	119619230	119619130	119619131	Frame_Shift_Ins	-	C	p.*64fs
LIHC	TCGA-BC-A112-01	FCGR1B	ENST00000369178.4	chr1	120930038:120930293:120934380:120934606:120935447:120935468,	120934381	120934606	120934402	120934403	Frame_Shift_Ins	-	G	p.T96fs
LIHC	TCGA-BC-A112-01	FCGR1B	ENST00000471609.1,ENST00000369384.4,ENST00000472543.1	chr1	120930038:120930293:120934380:120934635:120935447:120935468,	120934381	120934635	120934402	120934403	Frame_Shift_Ins	-	G	p.T96fs
LIHC	TCGA-BC-A112-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000313382.9,ENST00000369359.4,ENST00000479369.2,ENST00000369356.4	chr1	144873876:144874029:144874680:144874904:144875976:144876023,	144874681	144874904	144874893	144874894	Frame_Shift_Ins	-	C	p.A1708fs
LIHC	TCGA-BC-A112-01	CD160	ENST00000401557.3,ENST00000369288.2	chr1	145698952:145699090:145704016:145704343:145706685:145706827,	145704017	145704343	145704033	145704034	Frame_Shift_Ins	-	A	p.F128fs
LIHC	TCGA-BC-A112-01	GPR89A	ENST00000493684.1,ENST00000465185.2,ENST00000313835.9,ENST00000460277.1,ENST00000534502.1,ENST00000454423.3,ENST00000462900.2	chr1	145769407:145769497:145771634:145771730:145787771:145787864,	145771635	145771730	145771709	145771710	Frame_Shift_Ins	-	A	p.LS310fs
LIHC	TCGA-BC-A112-01	CHD1L	ENST00000369259.3,ENST00000488864.1	chr1	146714395:146714480:146737590:146737746:146739084:146739177,	146737591	146737746	146737661	146737662	Frame_Shift_Ins	-	C	p.Q271fs
LIHC	TCGA-BC-A112-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482157	150482158	Frame_Shift_Ins	-	C	p.P48fs
LIHC	TCGA-BC-A112-01	ECM1	ENST00000369049.4	chr1	150482006:150482057:150482136:150482232:150482310:150482478,	150482137	150482232	150482157	150482158	Frame_Shift_Ins	-	C	p.P48fs
LIHC	TCGA-BC-A112-01	ECM1	ENST00000346569.6,ENST00000369047.4	chr1	150482006:150482057:150482136:150482238:150482397:150482478,	150482137	150482238	150482157	150482158	Frame_Shift_Ins	-	C	p.P48fs
LIHC	TCGA-BC-A112-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923025	150923026	Frame_Shift_Ins	-	C	p.P558fs
LIHC	TCGA-BC-A112-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923064	150923065	Frame_Shift_Ins	-	T	p.F571fs
LIHC	TCGA-BC-A112-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2	chr1	151261003:151261182:151261570:151261747:151261853:151262016,	151261571	151261747	151261737	151261738	Frame_Shift_Ins	-	A	p.A821fs
LIHC	TCGA-BC-A112-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288332	151288333	Frame_Shift_Ins	-	A	p.P221fs
LIHC	TCGA-BC-A112-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288385	151288386	Frame_Shift_Ins	-	C	p.G203fs
LIHC	TCGA-BC-A112-01	THEM4	ENST00000368814.3	chr1	151860748:151860859:151861689:151861849:151867483:151867670,	151861690	151861849	151861738	151861739	Frame_Shift_Ins	-	T	p.D133fs
LIHC	TCGA-BC-A112-01	CRTC2	ENST00000368630.3,ENST00000487235.1,ENST00000368633.1,ENST00000303569.6	chr1	153920153:153920805:153920933:153921120:153921590:153921860,	153920934	153921120	153921040	153921041	Frame_Shift_Ins	-	A	p.W585fs
LIHC	TCGA-BC-A112-01	CRTC2	ENST00000368633.1,ENST00000303569.6,ENST00000461638.2	chr1	153921741:153921860:153923735:153924142:153924493:153924738,	153923736	153924142	153923907	153923908	Frame_Shift_Ins	-	A	p.W411fs
LIHC	TCGA-BC-A112-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	153999981:154000073:154002371:154002530:154018544:154018676,	154002372	154002530	154002407	154002408	Frame_Shift_Ins	-	C	p.F1274fs
LIHC	TCGA-BC-A112-01	UBE2Q1	ENST00000497453.1	chr1	154528335:154528440:154530702:154530841:154531383:154531504,	154530703	154530841	154530744	154530745	Frame_Shift_Ins	-	C	p.G96fs
LIHC	TCGA-BC-A112-01	ADAM15	ENST00000360674.4,ENST00000474709.1	chr1	155033238:155033308:155034720:155034845:155034935:155035066,155032741:155032819:155034720:155034845:155034935:155035145,	155034721	155034845	155034738	155034739	Frame_Shift_Ins	-	C	p.NP814fs
LIHC	TCGA-BC-A112-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449388	155449389	Frame_Shift_Ins	-	G	p.L1091fs
LIHC	TCGA-BC-A112-01	UBQLN4	ENST00000368309.3	chr1	156012564:156012704:156013788:156014014:156018291:156018450,	156013789	156014014	156013900	156013901	Frame_Shift_Ins	-	G	p.L339fs
LIHC	TCGA-BC-A112-01	TTC24	ENST00000368237.3,ENST00000368236.3	chr1	156555504:156555618:156555740:156555837:156556260:156556562,	156555741	156555837	156555752	156555753	Frame_Shift_Ins	-	G	p.G528fs
LIHC	TCGA-BC-A112-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666959	157666960	Frame_Shift_Ins	-	T	p.E272fs
LIHC	TCGA-BC-A112-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666959	157666960	Frame_Shift_Ins	-	T	p.E272fs
LIHC	TCGA-BC-A112-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666959	157666960	Frame_Shift_Ins	-	T	p.E272fs
LIHC	TCGA-BC-A112-01	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157738203:157738491:157739655:157739940:157740198:157740456,	157739656	157739940	157739885	157739886	Frame_Shift_Ins	-	C	p.A122fs
LIHC	TCGA-BC-A112-01	CD1E	ENST00000368160.3,ENST00000444681.2,ENST00000368167.3	chr1	158325317:158325359:158325616:158325895:158326287:158326381,	158325617	158325895	158325892	158325893	Frame_Shift_Ins	-	G	p.G202fs
LIHC	TCGA-BC-A112-01	IFI16	ENST00000368131.4,ENST00000474473.1,ENST00000340979.6,ENST00000368132.3,ENST00000448393.2,ENST00000483916.1,ENST00000295809.7,ENST00000493884.1	chr1	158985667:158985777:158986322:158986490:158988018:158988093,	158986323	158986490	158986327	158986328	Frame_Shift_Ins	-	A	p.K129fs
LIHC	TCGA-BC-A112-01	IFI16	ENST00000368131.4,ENST00000474473.1,ENST00000340979.6,ENST00000368132.3,ENST00000448393.2,ENST00000483916.1,ENST00000295809.7,ENST00000493884.1	chr1	158985667:158985777:158986322:158986490:158988018:158988093,	158986323	158986490	158986391	158986392	Frame_Shift_Ins	-	C	p.S151fs
LIHC	TCGA-BC-A112-01	ATP1A2	ENST00000392233.3,ENST00000447527.1,ENST00000361216.3,ENST00000472488.1	chr1	160100211:160100387:160104273:160104410:160104934:160105085,	160104274	160104410	160104404	160104405	Frame_Shift_Ins	-	C	p.T653fs
LIHC	TCGA-BC-A112-01	CD244	ENST00000368033.3	chr1	160808728:160808839:160810999:160811290:160811373:160811691,	160811000	160811290	160811257	160811258	Frame_Shift_Ins	-	G	p.P133fs
LIHC	TCGA-BC-A112-01	CD244	ENST00000368034.4,ENST00000368032.2,ENST00000492063.1	chr1	160808728:160808839:160810999:160811275:160811373:160811691,	160811000	160811275	160811257	160811258	Frame_Shift_Ins	-	G	p.P133fs
LIHC	TCGA-BC-A112-01	B4GALT3	ENST00000319769.5,ENST00000367998.1	chr1	161142016:161142121:161143394:161143517:161143648:161143839,	161143395	161143517	161143503	161143504	Frame_Shift_Ins	-	G	p.V232fs
LIHC	TCGA-BC-A112-01	UAP1	ENST00000367925.1,ENST00000271469.3	chr1	162558482:162558623:162560112:162560301:162567581:162567648,162558482:162558623:162560112:162560301:162562524:162562572,162558482:162558623:162560112:162560301:162562521:162562572,	162560113	162560301	162560296	162560297	Frame_Shift_Ins	-	C	p.IP451fs
LIHC	TCGA-BC-A112-01	PBX1	ENST00000340699.3	chr1	164528643:164528766:164528958:164529250:164532474:164532548,	164528959	164529250	164529108	164529109	Frame_Shift_Ins	-	C	p.R17fs
LIHC	TCGA-BC-A112-01	ALDH9A1	ENST00000354775.4,ENST00000538148.1	chr1	165632047:165632381:165634254:165634367:165636545:165636687,	165634255	165634367	165634353	165634354	Frame_Shift_Ins	-	C	p.S455fs
LIHC	TCGA-BC-A112-01	ATP1B1	ENST00000367816.1,ENST00000367815.4	chr1	169075657:169076164:169080607:169080736:169094121:169094277,	169080608	169080736	169080699	169080700	Frame_Shift_Ins	-	T	p.*64fs
LIHC	TCGA-BC-A112-01	CCDC181	ENST00000545005.1,ENST00000491570.1,ENST00000367805.3,ENST00000367806.3	chr1	169388250:169388397:169390600:169391551:169394048:169394168,	169390601	169391551	169391147	169391148	Frame_Shift_Ins	-	T	p.I174fs
LIHC	TCGA-BC-A112-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511225	169511226	Frame_Shift_Ins	-	T	p.E1040fs
LIHC	TCGA-BC-A112-01	FMO4	ENST00000475780.1	chr1	171288956:171289096:171292142:171292331:171293276:171293439,171288956:171289096:171292142:171292331:171306494:171306562,	171292143	171292331	171292203	171292204	Frame_Shift_Ins	-	A	p.N65fs
LIHC	TCGA-BC-A112-01	RABGAP1L	ENST00000357444.6,ENST00000251507.4,ENST00000457696.1,ENST00000367689.3,ENST00000367690.1	chr1	174247750:174247917:174274123:174274265:174340116:174340210,	174274124	174274265	174274131	174274132	Frame_Shift_Ins	-	A	p.E444fs
LIHC	TCGA-BC-A112-01	CEP350	ENST00000367607.3	chr1	179956377:179956421:179961196:179961356:179965687:179966098,179959641:179959756:179961196:179961356:179965687:179966098,	179961197	179961356	179961283	179961284	Frame_Shift_Ins	-	G	p.G108fs
LIHC	TCGA-BC-A112-01	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180904976	180904977	Frame_Shift_Ins	-	C	p.T644fs
LIHC	TCGA-BC-A112-01	COLGALT2	ENST00000361927.4,ENST00000546159.1	chr1	183938402:183938607:183942749:183942884:183944230:183944348,	183942750	183942884	183942803	183942804	Frame_Shift_Ins	-	G	p.A192fs
LIHC	TCGA-BC-A112-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186278106	186278107	Frame_Shift_Ins	-	A	p.T1086fs
LIHC	TCGA-BC-A112-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070731	197070732	Frame_Shift_Ins	-	A	p.*2550fs
LIHC	TCGA-BC-A112-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071084	197071085	Frame_Shift_Ins	-	T	p.NY2432fs
LIHC	TCGA-BC-A112-01	CYB5R1	ENST00000478009.1,ENST00000473599.1	chr1	202935014:202935121:202935876:202936026:202936318:202936353,202935655:202935728:202935876:202936026:202936318:202936353,	202935877	202936026	202936004	202936005	Frame_Shift_Ins	-	G	p.G13fs
LIHC	TCGA-BC-A112-01	NFASC	ENST00000401399.1,ENST00000339876.6	chr1	204960419:204960434:204966297:204966534:204970297:204970398,	204966298	204966534	204966311	204966312	Frame_Shift_Ins	-	C	p.FP1039fs
LIHC	TCGA-BC-A112-01	DSTYK	ENST00000367162.3,ENST00000367161.3	chr1	205138290:205138960:205156545:205156934:205180398:205180694,	205156546	205156934	205156753	205156754	Frame_Shift_Ins	-	T	p.T149fs
LIHC	TCGA-BC-A112-01	CDK18	ENST00000462976.1	chr1	205473929:205474006:205492274:205492753:205493359:205493457,	205492275	205492753	205492752	205492753	Frame_Shift_Ins	-	G	p.G91fs
LIHC	TCGA-BC-A112-01	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782698	207782699	Frame_Shift_Ins	-	T	p.F1987fs
LIHC	TCGA-BC-A112-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557242	214557243	Frame_Shift_Ins	-	C	p.D652fs
LIHC	TCGA-BC-A112-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818421	214818422	Frame_Shift_Ins	-	A	p.R1837fs
LIHC	TCGA-BC-A112-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819819	214819820	Frame_Shift_Ins	-	A	p.S*2302fs
LIHC	TCGA-BC-A112-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819853	214819854	Frame_Shift_Ins	-	A	p.K2314fs
LIHC	TCGA-BC-A112-01	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220161931:220162165:220170324:220170684:220174479:220174597,	220170325	220170684	220170662	220170663	Frame_Shift_Ins	-	T	p.T735fs
LIHC	TCGA-BC-A112-01	BROX	ENST00000539697.1,ENST00000340934.5	chr1	222903368:222903519:222904698:222904858:222905969:222906254,	222904699	222904858	222904724	222904725	Frame_Shift_Ins	-	C	p.P339fs
LIHC	TCGA-BC-A112-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225528158:225528403:225533663:225534082:225534157:225534356,	225533664	225534082	225533785	225533786	Frame_Shift_Ins	-	A	p.RK3507fs
LIHC	TCGA-BC-A112-01	ENAH	ENST00000366844.3,ENST00000284563.6,ENST00000366843.2	chr1	225700572:225700718:225702297:225702602:225704897:225705008,	225702298	225702602	225702379	225702380	Frame_Shift_Ins	-	A	p.C379fs
LIHC	TCGA-BC-A112-01	ENAH	ENST00000366844.3,ENST00000284563.6,ENST00000366843.2	chr1	225700572:225700718:225702297:225702602:225704897:225705008,	225702298	225702602	225702430	225702431	Frame_Shift_Ins	-	G	p.P362fs
LIHC	TCGA-BC-A112-01	ENAH	ENST00000366844.3,ENST00000284563.6,ENST00000366843.2	chr1	225700572:225700718:225702297:225702602:225704897:225705008,	225702298	225702602	225702463	225702464	Frame_Shift_Ins	-	G	p.P351fs
LIHC	TCGA-BC-A112-01	ENAH	ENST00000284563.6	chr1	225702297:225702602:225704897:225705692:225706899:225706976,	225704898	225705692	225705415	225705416	Frame_Shift_Ins	-	T	p.I379fs
LIHC	TCGA-BC-A112-01	ENAH	ENST00000284563.6	chr1	225702297:225702602:225704897:225705692:225706899:225706976,	225704898	225705692	225705460	225705461	Frame_Shift_Ins	-	G	p.R364fs
LIHC	TCGA-BC-A112-01	CDC42BPA	ENST00000442054.1,ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366767.3,ENST00000366766.2,ENST00000448940.1,ENST00000366765.3,ENST00000429440.1,ENST00000366764.2	chr1	227204627:227204751:227210963:227211048:227213755:227213853,	227210964	227211048	227211016	227211017	Frame_Shift_Ins	-	T	p.T1486fs
LIHC	TCGA-BC-A112-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228494959:228495232:228495811:228496084:228496799:228496996,	228495812	228496084	228495914	228495915	Frame_Shift_Ins	-	G	p.A5147fs
LIHC	TCGA-BC-A112-01	SIPA1L2	ENST00000262861.4,ENST00000308942.4,ENST00000366630.1	chr1	232579347:232579431:232581274:232581532:232596632:232596907,	232581275	232581532	232581450	232581451	Frame_Shift_Ins	-	G	p.Q1060fs
LIHC	TCGA-BC-A112-01	NTPCR	ENST00000366628.5,ENST00000490807.1,ENST00000366627.4	chr1	233086587:233086878:233091302:233091465:233092092:233092189,233086385:233086490:233091302:233091465:233092092:233092189,	233091303	233091465	233091309	233091310	Frame_Shift_Ins	-	A	p.E14fs
LIHC	TCGA-BC-A112-01	NTPCR	ENST00000366628.5,ENST00000490807.1,ENST00000366627.4	chr1	233086587:233086878:233091302:233091465:233092092:233092189,233086385:233086490:233091302:233091465:233092092:233092189,	233091303	233091465	233091373	233091374	Frame_Shift_Ins	-	T	p.L36fs
LIHC	TCGA-BC-A112-01	SLC35F3	ENST00000366618.3	chr1	234041274:234041504:234367162:234367487:234444846:234445066,	234367163	234367487	234367244	234367245	Frame_Shift_Ins	-	C	p.P122fs
LIHC	TCGA-BC-A112-01	ARID4B	ENST00000474953.1,ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000264183.3	chr1	235331858:235331967:235335932:235336079:235338498:235338714,	235335933	235336079	235335942	235335943	Frame_Shift_Ins	-	T	p.E1268fs
LIHC	TCGA-BC-A112-01	SDCCAG8	ENST00000355875.4,ENST00000366541.3,ENST00000343783.6	chr1	243579003:243579131:243581269:243581378:243589728:243589860,	243581270	243581378	243581368	243581369	Frame_Shift_Ins	-	A	p.K615fs
LIHC	TCGA-BC-A112-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926436	1926437	Frame_Shift_Ins	-	T	p.K369fs
LIHC	TCGA-BC-A112-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926436	1926437	Frame_Shift_Ins	-	T	p.K369fs
LIHC	TCGA-BC-A112-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926821	1926822	Frame_Shift_Ins	-	T	p.R240fs
LIHC	TCGA-BC-A112-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926821	1926822	Frame_Shift_Ins	-	T	p.R240fs
LIHC	TCGA-BC-A112-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000338086.5,ENST00000536417.1	chr2	20462953:20463221:20478343:20478580:20482707:20482989,	20478344	20478580	20478472	20478473	Frame_Shift_Ins	-	A	p.Q610fs
LIHC	TCGA-BC-A112-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24951176:24951345:24952369:24952684:24962300:24962402,	24952370	24952684	24952564	24952565	Frame_Shift_Ins	-	C	p.PP1027fs
LIHC	TCGA-BC-A112-01	KIF3C	ENST00000264712.3,ENST00000455394.1,ENST00000417737.1,ENST00000405914.1	chr2	26151621:26151940:26152173:26152346:26152823:26152929,	26152174	26152346	26152328	26152329	Frame_Shift_Ins	-	A	p.G712fs
LIHC	TCGA-BC-A112-01	TMEM214	ENST00000404032.3,ENST00000321326.7,ENST00000238788.9	chr2	27256005:27256034:27256934:27257134:27258002:27258153,	27256935	27257134	27257014	27257015	Frame_Shift_Ins	-	C	p.PP77fs
LIHC	TCGA-BC-A112-01	SLC30A3	ENST00000233535.4,ENST00000432351.1,ENST00000447008.2,ENST00000426924.1	chr2	27480069:27480220:27480772:27480926:27481028:27481175,	27480773	27480926	27480817	27480818	Frame_Shift_Ins	-	C	p.G178fs
LIHC	TCGA-BC-A112-01	MPV17	ENST00000489478.1	chr2	27534802:27534819:27535081:27535456:27535546:27535639,	27535082	27535456	27535451	27535452	Frame_Shift_Ins	-	C	p.V39fs
LIHC	TCGA-BC-A112-01	MPV17	ENST00000402722.1	chr2	27535081:27535114:27535360:27535456:27535546:27535639,27532771:27532849:27535360:27535456:27535546:27535639,	27535361	27535456	27535451	27535452	Frame_Shift_Ins	-	C	p.V39fs
LIHC	TCGA-BC-A112-01	WDR43	ENST00000407426.3,ENST00000296126.6,ENST00000440983.1	chr2	29129325:29129447:29135455:29135576:29136934:29137036,	29135456	29135576	29135574	29135575	Frame_Shift_Ins	-	G	p.A202fs
LIHC	TCGA-BC-A112-01	GALNT14	ENST00000481023.1,ENST00000464038.1,ENST00000496397.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000455477.1,ENST00000424136.1,ENST00000356174.3	chr2	31178595:31178605:31178777:31178843:31181262:31181330,	31178778	31178843	31178781	31178782	Frame_Shift_Ins	-	C	p.R177fs
LIHC	TCGA-BC-A112-01	CAPN14	ENST00000444918.2,ENST00000403897.3,ENST00000398824.2	chr2	31399452:31399508:31399891:31400008:31400611:31400684,	31399892	31400008	31399939	31399940	Frame_Shift_Ins	-	C	p.L642fs
LIHC	TCGA-BC-A112-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476338	32476339	Frame_Shift_Ins	-	T	p.NR198fs
LIHC	TCGA-BC-A112-01	BIRC6	ENST00000421745.2	chr2	32692970:32693179:32693504:32693851:32694462:32694682,	32693505	32693851	32693629	32693630	Frame_Shift_Ins	-	G	p.G1969fs
LIHC	TCGA-BC-A112-01	QPCT	ENST00000338415.3	chr2	37571870:37571994:37586722:37587001:37594374:37594551,37579931:37580078:37586722:37587001:37594374:37594551,	37586723	37587001	37586862	37586863	Frame_Shift_Ins	-	C	p.A136fs
LIHC	TCGA-BC-A112-01	SOS1	ENST00000428721.2,ENST00000395038.2,ENST00000451331.1,ENST00000426016.1,ENST00000402219.2	chr2	39283873:39284007:39285813:39285945:39294768:39294894,	39285814	39285945	39285929	39285930	Frame_Shift_Ins	-	T	p.F77fs
LIHC	TCGA-BC-A112-01	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927222	43927223	Frame_Shift_Ins	-	A	p.RK375fs
LIHC	TCGA-BC-A112-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428347	44428348	Frame_Shift_Ins	-	T	p.AF3fs
LIHC	TCGA-BC-A112-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428369	44428370	Frame_Shift_Ins	-	A	p.K11fs
LIHC	TCGA-BC-A112-01	FOXN2	ENST00000413569.1,ENST00000340553.3	chr2	48573339:48573890:48586185:48586286:48589781:48589846,	48586186	48586286	48586262	48586263	Frame_Shift_Ins	-	T	p.L205fs
LIHC	TCGA-BC-A112-01	NRXN1	ENST00000401710.1,ENST00000406316.2,ENST00000406859.3,ENST00000342183.5	chr2	50170850:50170929:50280408:50280728:50318460:50318632,	50280409	50280728	50280568	50280569	Frame_Shift_Ins	-	T	p.S1363fs
LIHC	TCGA-BC-A112-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252294	55252295	Frame_Shift_Ins	-	T	p.NS980fs
LIHC	TCGA-BC-A112-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55254142	55254143	Frame_Shift_Ins	-	T	p.NK364fs
LIHC	TCGA-BC-A112-01	PEX13	ENST00000295030.5	chr2	61244864:61244986:61258553:61259248:61272860:61272986,	61258554	61259248	61258983	61258984	Frame_Shift_Ins	-	T	p.Y175fs
LIHC	TCGA-BC-A112-01	USP34	ENST00000398571.2	chr2	61622317:61622368:61632842:61633263:61647880:61647968,	61632843	61633263	61633217	61633218	Frame_Shift_Ins	-	A	p.LS59fs
LIHC	TCGA-BC-A112-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63175562	63175563	Frame_Shift_Ins	-	A	p.RK562fs
LIHC	TCGA-BC-A112-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778825	64778826	Frame_Shift_Ins	-	A	p.K73fs
LIHC	TCGA-BC-A112-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64779545	64779546	Frame_Shift_Ins	-	A	p.K313fs
LIHC	TCGA-BC-A112-01	MPHOSPH10	ENST00000244230.2	chr2	71361755:71361927:71365619:71365761:71366924:71366992,	71365620	71365761	71365626	71365627	Frame_Shift_Ins	-	A	p.K369fs
LIHC	TCGA-BC-A112-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650707	71650708	Frame_Shift_Ins	-	A	p.K1355fs
LIHC	TCGA-BC-A112-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73675543	73675544	Frame_Shift_Ins	-	T	p.I629fs
LIHC	TCGA-BC-A112-01	POLR1A	ENST00000263857.6,ENST00000409681.1	chr2	86266449:86266585:86267514:86267682:86269011:86269226,	86267515	86267682	86267572	86267573	Frame_Shift_Ins	-	G	p.Q1228fs
LIHC	TCGA-BC-A112-01	POLR1A	ENST00000263857.6,ENST00000409681.1	chr2	86297140:86297395:86302152:86302383:86304981:86305104,	86302153	86302383	86302274	86302275	Frame_Shift_Ins	-	C	p.H497fs
LIHC	TCGA-BC-A112-01	TMEM131	ENST00000186436.5	chr2	98392305:98392481:98408848:98409447:98409857:98410016,	98408849	98409447	98409001	98409002	Frame_Shift_Ins	-	G	p.P1331fs
LIHC	TCGA-BC-A112-01	CNOT11	ENST00000289382.3,ENST00000420107.1	chr2	101881436:101881509:101883138:101883341:101885501:101885594,	101883139	101883341	101883217	101883218	Frame_Shift_Ins	-	A	p.K372fs
LIHC	TCGA-BC-A112-01	IL1RL1	ENST00000427077.1	chr2	102957125:102957288:102957647:102957817:102958682:102958754,	102957648	102957817	102957660	102957661	Frame_Shift_Ins	-	T	p.I208fs
LIHC	TCGA-BC-A112-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087114	109087115	Frame_Shift_Ins	-	T	p.TF443fs
LIHC	TCGA-BC-A112-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381898	109381899	Frame_Shift_Ins	-	A	p.K1635fs
LIHC	TCGA-BC-A112-01	SH3RF3	ENST00000309415.6,ENST00000418513.1	chr2	109964129:109964405:109988041:109988137:110015045:110015399,	109988042	109988137	109988118	109988119	Frame_Shift_Ins	-	C	p.S309fs
LIHC	TCGA-BC-A112-01	FAM168B	ENST00000409185.1,ENST00000389915.3	chr2	131812844:131813022:131813125:131813268:131829427:131829511,	131813126	131813268	131813135	131813136	Frame_Shift_Ins	-	G	p.L96fs
LIHC	TCGA-BC-A112-01	FAM168B	ENST00000409185.1,ENST00000389915.3	chr2	131812844:131813022:131813125:131813268:131829427:131829511,	131813126	131813268	131813145	131813146	Frame_Shift_Ins	-	G	p.A93fs
LIHC	TCGA-BC-A112-01	PLEKHB2	ENST00000439822.2	chr2	131883325:131883478:131884256:131884359:131888293:131888333,131883325:131883478:131884256:131884359:131897742:131897848,	131884257	131884359	131884264	131884265	Frame_Shift_Ins	-	C	p.HP66fs
LIHC	TCGA-BC-A112-01	MCM6	ENST00000264156.2	chr2	136626180:136626430:136627820:136627931:136630266:136630413,	136627821	136627931	136627908	136627909	Frame_Shift_Ins	-	C	p.L93fs
LIHC	TCGA-BC-A112-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156665	145156666	Frame_Shift_Ins	-	T	p.NL696fs
LIHC	TCGA-BC-A112-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157651	145157652	Frame_Shift_Ins	-	G	p.V368fs
LIHC	TCGA-BC-A112-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247665	149247666	Frame_Shift_Ins	-	G	p.PG1255fs
LIHC	TCGA-BC-A112-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152291976:152292094:152293340:152293517:152293754:152293865,	152293341	152293517	152293349	152293350	Frame_Shift_Ins	-	C	p.P402fs
LIHC	TCGA-BC-A112-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320464	152320465	Frame_Shift_Ins	-	T	p.I1477fs
LIHC	TCGA-BC-A112-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152322082	152322083	Frame_Shift_Ins	-	A	p.N2017fs
LIHC	TCGA-BC-A112-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152322128	152322129	Frame_Shift_Ins	-	A	p.N2032fs
LIHC	TCGA-BC-A112-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152322552	152322553	Frame_Shift_Ins	-	T	p.L2173fs
LIHC	TCGA-BC-A112-01	NEB	ENST00000604864.1,ENST00000427231.2,ENST00000413693.1,ENST00000409198.1,ENST00000172853.10	chr2	152388340:152388410:152390728:152390833:152392204:152392309,	152390729	152390833	152390827	152390828	Frame_Shift_Ins	-	T	p.Q7107fs
LIHC	TCGA-BC-A112-01	DAPL1	ENST00000343761.4	chr2	159663594:159663627:159682907:159682999:159718920:159719293,	159682908	159682999	159682996	159682997	Frame_Shift_Ins	-	A	p.K99fs
LIHC	TCGA-BC-A112-01	SLC38A11	ENST00000303735.4	chr2	165795959:165796066:165802102:165802237:165809216:165809291,	165802103	165802237	165802231	165802232	Frame_Shift_Ins	-	A	p.P23fs
LIHC	TCGA-BC-A112-01	SLC38A11	ENST00000409149.3	chr2	165802102:165802237:165809216:165809291:165811718:165811756,	165809217	165809291	165809251	165809252	Frame_Shift_Ins	-	C	p.D9fs
LIHC	TCGA-BC-A112-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099431	168099432	Frame_Shift_Ins	-	A	p.K510fs
LIHC	TCGA-BC-A112-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100591	168100592	Frame_Shift_Ins	-	A	p.K897fs
LIHC	TCGA-BC-A112-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102775	168102776	Frame_Shift_Ins	-	T	p.*1625fs
LIHC	TCGA-BC-A112-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103641	168103642	Frame_Shift_Ins	-	A	p.LK1913fs
LIHC	TCGA-BC-A112-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104502	168104503	Frame_Shift_Ins	-	A	p.KK2200fs
LIHC	TCGA-BC-A112-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168108332	168108333	Frame_Shift_Ins	-	A	p.K3477fs
LIHC	TCGA-BC-A112-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170413696:170413807:170416896:170417295:170419734:170419860,	170416897	170417295	170417207	170417208	Frame_Shift_Ins	-	A	p.LH220fs
LIHC	TCGA-BC-A112-01	PPIG	ENST00000417938.2,ENST00000260970.3,ENST00000530152.1,ENST00000433207.1,ENST00000462903.1,ENST00000414307.1,ENST00000448752.2	chr2	170462612:170462656:170463613:170463658:170465180:170465268,	170463614	170463658	170463648	170463649	Frame_Shift_Ins	-	T	p.GF93fs
LIHC	TCGA-BC-A112-01	SCRN3	ENST00000490927.1	chr2	175260472:175260545:175264649:175264831:175265717:175265782,	175264650	175264831	175264719	175264720	Frame_Shift_Ins	-	G	p.G77fs
LIHC	TCGA-BC-A112-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177033995	177033996	Frame_Shift_Ins	-	C	p.PP51fs
LIHC	TCGA-BC-A112-01	TTN	ENST00000589042.1,ENST00000591111.1,ENST00000342992.6	chr2	179548725:179548809:179549056:179549140:179549392:179549476,	179549057	179549140	179549078	179549079	Frame_Shift_Ins	-	T	p.G10901fs
LIHC	TCGA-BC-A112-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604778	179604779	Frame_Shift_Ins	-	T	p.T4394fs
LIHC	TCGA-BC-A112-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606349	179606350	Frame_Shift_Ins	-	A	p.LR3870fs
LIHC	TCGA-BC-A112-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183850898:183850955:183853757:183853914:183859566:183859615,	183853758	183853914	183853901	183853902	Frame_Shift_Ins	-	A	p.L274fs
LIHC	TCGA-BC-A112-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672588	186672589	Frame_Shift_Ins	-	T	p.NF6274fs
LIHC	TCGA-BC-A112-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673386	186673387	Frame_Shift_Ins	-	A	p.PK6540fs
LIHC	TCGA-BC-A112-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190532148	190532149	Frame_Shift_Ins	-	A	p.C431fs
LIHC	TCGA-BC-A112-01	ASNSD1	ENST00000606910.1	chr2	190530147:190530177:190531921:190532322:190532489:190532607,	190531922	190532322	190532148	190532149	Frame_Shift_Ins	-	A	p.C431fs
LIHC	TCGA-BC-A112-01	GLS	ENST00000409428.1,ENST00000320717.3	chr2	191819309:191819386:191819480:191819544:191827555:191827714,	191819481	191819544	191819532	191819533	Frame_Shift_Ins	-	C	p.S614fs
LIHC	TCGA-BC-A112-01	CCDC150	ENST00000448409.1,ENST00000424427.1	chr2	197590696:197590823:197593916:197594585:197594680:197594842,	197593917	197594585	197594030	197594031	Frame_Shift_Ins	-	A	p.N891fs
LIHC	TCGA-BC-A112-01	CCDC150	ENST00000409270.1,ENST00000389175.4,ENST00000431807.2,ENST00000272831.7	chr2	197590696:197590823:197593916:197594111:197594516:197594585,	197593917	197594111	197594030	197594031	Frame_Shift_Ins	-	A	p.N891fs
LIHC	TCGA-BC-A112-01	TYW5	ENST00000441832.1,ENST00000483328.1	chr2	200808487:200808557:200813059:200813195:200820115:200820223,	200813060	200813195	200813171	200813172	Frame_Shift_Ins	-	C	p.*35fs
LIHC	TCGA-BC-A112-01	ORC2	ENST00000467605.1,ENST00000234296.2	chr2	201807407:201807500:201814276:201814366:201822123:201822267,	201814277	201814366	201814353	201814354	Frame_Shift_Ins	-	T	p.R84fs
LIHC	TCGA-BC-A112-01	NDUFS1	ENST00000456284.1	chr2	207013743:207013820:207014503:207014649:207017142:207017234,	207014504	207014649	207014645	207014646	Frame_Shift_Ins	-	A	p.*53fs
LIHC	TCGA-BC-A112-01	NDUFS1	ENST00000449699.1,ENST00000454195.1,ENST00000455934.2,ENST00000233190.6	chr2	207013743:207013820:207014541:207014649:207017142:207017234,	207014542	207014649	207014645	207014646	Frame_Shift_Ins	-	A	p.*53fs
LIHC	TCGA-BC-A112-01	CCNYL1	ENST00000295414.3,ENST00000392209.3,ENST00000452312.1	chr2	208591565:208591600:208598670:208598771:208602134:208602170,	208598671	208598771	208598765	208598766	Frame_Shift_Ins	-	A	p.E142fs
LIHC	TCGA-BC-A112-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208841629	208841630	Frame_Shift_Ins	-	G	p.G431fs
LIHC	TCGA-BC-A112-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557992	210557993	Frame_Shift_Ins	-	A	p.N367fs
LIHC	TCGA-BC-A112-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557992	210557993	Frame_Shift_Ins	-	A	p.N367fs
LIHC	TCGA-BC-A112-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210560951	210560952	Frame_Shift_Ins	-	C	p.P1353fs
LIHC	TCGA-BC-A112-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210560951	210560952	Frame_Shift_Ins	-	C	p.P1353fs
LIHC	TCGA-BC-A112-01	SLC23A3	ENST00000414999.1	chr2	220032935:220033040:220033369:220033555:220033750:220033824,	220033370	220033555	220033384	220033385	Frame_Shift_Ins	-	C	p.G230fs
LIHC	TCGA-BC-A112-01	SLC23A3	ENST00000409370.2,ENST00000455516.2,ENST00000409878.3	chr2	220032935:220033040:220033373:220033555:220033750:220033824,	220033374	220033555	220033384	220033385	Frame_Shift_Ins	-	C	p.G230fs
LIHC	TCGA-BC-A112-01	SLC19A3	ENST00000258403.3,ENST00000425817.1	chr2	228560604:228560797:228563451:228564280:228566884:228567036,	228563452	228564280	228563864	228563865	Frame_Shift_Ins	-	A	p.S189fs
LIHC	TCGA-BC-A112-01	CAB39	ENST00000258418.5,ENST00000410084.3,ENST00000409788.3	chr2	231657927:231658046:231663443:231663612:231674977:231675037,	231663444	231663612	231663597	231663598	Frame_Shift_Ins	-	T	p.C185fs
LIHC	TCGA-BC-A112-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000429283.2,ENST00000445090.1,ENST00000390005.5,ENST00000424049.1	chr2	233195399:233195486:233198549:233198697:233199078:233199164,	233198550	233198697	233198581	233198582	Frame_Shift_Ins	-	G	p.R681fs
LIHC	TCGA-BC-A112-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233697570:233697803:233704558:233704681:233708755:233708906,	233704559	233704681	233704640	233704641	Frame_Shift_Ins	-	A	p.K972fs
LIHC	TCGA-BC-A112-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233712230:233712281:233714971:233715119:233721502:233723318,	233714972	233715119	233714981	233714982	Frame_Shift_Ins	-	G	p.G1254fs
LIHC	TCGA-BC-A112-01	COPS8	ENST00000392008.2,ENST00000419015.1,ENST00000409629.1,ENST00000354371.2	chr2	237997247:237997296:237998504:237998637:238002305:238002840,237997247:237997296:237998504:237998637:238002732:238002829,	237998505	237998637	237998623	237998624	Frame_Shift_Ins	-	G	p.R106fs
LIHC	TCGA-BC-A112-01	KIF1A	ENST00000404283.3,ENST00000498729.2	chr2	241689845:241689964:241696735:241697011:241697776:241697910,	241696736	241697011	241696935	241696936	Frame_Shift_Ins	-	G	p.PP886fs
LIHC	TCGA-BC-A112-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573291	242573292	Frame_Shift_Ins	-	C	p.W94fs
LIHC	TCGA-BC-A112-01	D2HGDH	ENST00000537090.1,ENST00000400769.2,ENST00000436747.1,ENST00000342518.6	chr2	242674044:242674110:242674547:242674931:242680447:242680505,	242674548	242674931	242674690	242674691	Frame_Shift_Ins	-	C	p.G18fs
LIHC	TCGA-BC-A112-01	D2HGDH	ENST00000436747.1	chr2	242689565:242689709:242690660:242690803:242695263:242695429,242689565:242689709:242690660:242690803:242694045:242694161,	242690661	242690803	242690724	242690725	Frame_Shift_Ins	-	G	p.R354fs
LIHC	TCGA-BC-A112-01	IL17RE	ENST00000421412.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3,ENST00000383815.3,ENST00000434065.1	chr3	9952940:9952984:9953126:9953281:9955639:9955708,	9953127	9953281	9953238	9953239	Frame_Shift_Ins	-	G	p.W395fs
LIHC	TCGA-BC-A112-01	FANCD2	ENST00000287647.3,ENST00000431693.1,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10074515:10074656:10076152:10076220:10076378:10076482,	10076153	10076220	10076217	10076218	Frame_Shift_Ins	-	A	p.N91fs
LIHC	TCGA-BC-A112-01	TAMM41	ENST00000457498.1,ENST00000444133.2,ENST00000273037.5,ENST00000455809.1,ENST00000411947.1	chr3	11880695:11880788:11885502:11885685:11887975:11888246,	11885503	11885685	11885614	11885615	Frame_Shift_Ins	-	T	p.M69fs
LIHC	TCGA-BC-A112-01	TMEM40	ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12783952:12784006:12785398:12785488:12790153:12790291,	12785399	12785488	12785428	12785429	Frame_Shift_Ins	-	C	p.W91fs
LIHC	TCGA-BC-A112-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833008	25833009	Frame_Shift_Ins	-	T	p.I166fs
LIHC	TCGA-BC-A112-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833030	25833031	Frame_Shift_Ins	-	A	p.S174fs
LIHC	TCGA-BC-A112-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36899168	36899169	Frame_Shift_Ins	-	G	p.G88fs
LIHC	TCGA-BC-A112-01	MLH1	ENST00000447829.1	chr3	37058996:37059090:37061800:37061954:37067127:37067498,37055922:37056035:37061800:37061954:37067127:37067410,	37061801	37061954	37061920	37061921	Frame_Shift_Ins	-	G	p.R335fs
LIHC	TCGA-BC-A112-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365166	37365167	Frame_Shift_Ins	-	A	p.K597fs
LIHC	TCGA-BC-A112-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368784	37368785	Frame_Shift_Ins	-	A	p.K1803fs
LIHC	TCGA-BC-A112-01	CTDSPL	ENST00000447745.1,ENST00000310189.3,ENST00000273179.5,ENST00000486978.1,ENST00000443503.2	chr3	38009316:38009373:38012897:38012990:38017199:38017277,	38012898	38012990	38012952	38012953	Frame_Shift_Ins	-	T	p.F150fs
LIHC	TCGA-BC-A112-01	OXSR1	ENST00000311806.3,ENST00000426620.1,ENST00000446845.1,ENST00000483695.1	chr3	38263068:38263178:38265302:38265404:38266061:38266195,	38265303	38265404	38265386	38265387	Frame_Shift_Ins	-	A	p.I229fs
LIHC	TCGA-BC-A112-01	ULK4	ENST00000301831.4	chr3	41723243:41723295:41746548:41746643:41746745:41746797,	41746549	41746643	41746570	41746571	Frame_Shift_Ins	-	A	p.F920fs
LIHC	TCGA-BC-A112-01	MAP4	ENST00000383737.4,ENST00000335271.5,ENST00000383736.3,ENST00000429422.1,ENST00000441748.2,ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47912347:47912595:47912716:47912776:47913406:47913590,	47912717	47912776	47912756	47912757	Frame_Shift_Ins	-	T	p.NC1987fs
LIHC	TCGA-BC-A112-01	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49167774:49167852:49168172:49168293:49168382:49168585,	49168173	49168293	49168208	49168209	Frame_Shift_Ins	-	G	p.S334fs
LIHC	TCGA-BC-A112-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49946685:49946833:49947551:49948317:49950652:49950792,49946685:49946833:49947551:49948317:49948958:49949444,	49947552	49948317	49948072	49948073	Frame_Shift_Ins	-	G	p.L295fs
LIHC	TCGA-BC-A112-01	NPRL2	ENST00000232501.3,ENST00000476064.1,ENST00000487632.1,ENST00000461020.1,ENST00000479512.1	chr3	50385189:50385332:50385554:50385672:50385747:50385841,	50385555	50385672	50385579	50385580	Frame_Shift_Ins	-	G	p.A303fs
LIHC	TCGA-BC-A112-01	GNL3	ENST00000496254.1,ENST00000394799.2,ENST00000418458.1	chr3	52726887:52727062:52727202:52727345:52727423:52727560,	52727203	52727345	52727247	52727248	Frame_Shift_Ins	-	T	p.DF351fs
LIHC	TCGA-BC-A112-01	ITIH1	ENST00000540715.1,ENST00000273283.2,ENST00000537050.1	chr3	52820310:52820450:52820960:52821115:52821203:52821218,	52820961	52821115	52821113	52821114	Frame_Shift_Ins	-	G	p.G629fs
LIHC	TCGA-BC-A112-01	DNAH12	ENST00000495027.1,ENST00000351747.2	chr3	57440501:57440621:57443447:57443730:57443825:57443947,	57443448	57443730	57443645	57443646	Frame_Shift_Ins	-	T	p.L1024fs
LIHC	TCGA-BC-A112-01	DENND6A	ENST00000311128.5	chr3	57649362:57649443:57651849:57651962:57657982:57658025,	57651850	57651962	57651938	57651939	Frame_Shift_Ins	-	A	p.F115fs
LIHC	TCGA-BC-A112-01	PTPRG	ENST00000474889.1	chr3	62204524:62204657:62216898:62216985:62229480:62229572,	62216899	62216985	62216976	62216977	Frame_Shift_Ins	-	G	p.R789fs
LIHC	TCGA-BC-A112-01	MAGI1	ENST00000483466.1,ENST00000402939.2,ENST00000497477.2,ENST00000460329.2,ENST00000472257.1,ENST00000463103.2,ENST00000330909.8,ENST00000479287.1	chr3	65438932:65439015:65455957:65456159:65464266:65464309,	65455958	65456159	65455978	65455979	Frame_Shift_Ins	-	T	p.R313fs
LIHC	TCGA-BC-A112-01	MAGI1	ENST00000470990.1,ENST00000464060.1	chr3	65438932:65439015:65455957:65456162:65464266:65464309,	65455958	65456162	65455978	65455979	Frame_Shift_Ins	-	T	p.R313fs
LIHC	TCGA-BC-A112-01	GXYLT2	ENST00000491839.1,ENST00000389617.4	chr3	73004365:73004500:73006379:73006503:73016697:73016870,	73006380	73006503	73006458	73006459	Frame_Shift_Ins	-	G	p.G311fs
LIHC	TCGA-BC-A112-01	ROBO1	ENST00000467549.1,ENST00000495273.1	chr3	78795892:78796050:78987750:78988077:79067556:79067694,	78987751	78988077	78987863	78987864	Frame_Shift_Ins	-	A	p.F90fs
LIHC	TCGA-BC-A112-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491566	107491567	Frame_Shift_Ins	-	G	p.R333fs
LIHC	TCGA-BC-A112-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491987	107491988	Frame_Shift_Ins	-	A	p.*K473fs
LIHC	TCGA-BC-A112-01	CD47	ENST00000517766.1	chr3	107768465:107768498:107769424:107769449:107770785:107770817,107765984:107766139:107769424:107769449:107770785:107770817,	107769425	107769449	107769430	107769431	Frame_Shift_Ins	-	G	p.*310fs
LIHC	TCGA-BC-A112-01	TMPRSS7	ENST00000419127.1,ENST00000435737.1,ENST00000452346.2	chr3	111794167:111794339:111795722:111795991:111797588:111797725,	111795723	111795991	111795970	111795971	Frame_Shift_Ins	-	G	p.G735fs
LIHC	TCGA-BC-A112-01	GTPBP8	ENST00000473129.1,ENST00000467752.1,ENST00000383678.2	chr3	112709855:112710182:112713981:112714112:112715738:112715838,112711885:112711971:112713981:112714112:112715738:112715838,	112713982	112714112	112714097	112714098	Frame_Shift_Ins	-	A	p.Q151fs
LIHC	TCGA-BC-A112-01	POLQ	ENST00000264233.5	chr3	121200418:121200659:121202232:121202429:121203887:121204031,	121202233	121202429	121202409	121202410	Frame_Shift_Ins	-	A	p.T1932fs
LIHC	TCGA-BC-A112-01	POLQ	ENST00000264233.5	chr3	121200418:121200659:121202232:121202429:121203887:121204031,	121202233	121202429	121202413	121202414	Frame_Shift_Ins	-	A	p.C1930fs
LIHC	TCGA-BC-A112-01	RPN1	ENST00000296255.3,ENST00000497289.1,ENST00000495462.1	chr3	128350963:128351000:128356641:128356948:128363761:128363826,	128356642	128356948	128356666	128356667	Frame_Shift_Ins	-	A	p.*203fs
LIHC	TCGA-BC-A112-01	IFT122	ENST00000511498.1,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000504021.1,ENST00000440957.2,ENST00000349441.2	chr3	129182402:129182469:129183477:129183624:129188184:129188260,	129183478	129183624	129183556	129183557	Frame_Shift_Ins	-	A	p.S217fs
LIHC	TCGA-BC-A112-01	DNAJC13	ENST00000260818.6	chr3	132212987:132213103:132213931:132214010:132215371:132215507,	132213932	132214010	132213958	132213959	Frame_Shift_Ins	-	T	p.V1323fs
LIHC	TCGA-BC-A112-01	AMOTL2	ENST00000506326.1,ENST00000249883.5	chr3	134076392:134076605:134077381:134077561:134078124:134078345,	134077382	134077561	134077531	134077532	Frame_Shift_Ins	-	C	p.H769fs
LIHC	TCGA-BC-A112-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000513145.1	chr3	134076392:134076605:134077381:134077558:134078124:134078345,	134077382	134077558	134077531	134077532	Frame_Shift_Ins	-	C	p.H769fs
LIHC	TCGA-BC-A112-01	EPHB1	ENST00000493838.1,ENST00000398015.3	chr3	134885783:134885848:134898701:134898824:134911417:134911665,	134898702	134898824	134898729	134898730	Frame_Shift_Ins	-	C	p.A596fs
LIHC	TCGA-BC-A112-01	DBR1	ENST00000505015.2,ENST00000260803.4	chr3	137882619:137882700:137885922:137886147:137888948:137889034,	137885923	137886147	137886057	137886058	Frame_Shift_Ins	-	T	p.NF193fs
LIHC	TCGA-BC-A112-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1	chr3	138413627:138413749:138417748:138417937:138423284:138423335,	138417749	138417937	138417916	138417917	Frame_Shift_Ins	-	A	p.S535fs
LIHC	TCGA-BC-A112-01	HPS3	ENST00000460120.1,ENST00000296051.2	chr3	148871280:148871435:148872893:148873002:148875136:148875318,	148872894	148873002	148872953	148872954	Frame_Shift_Ins	-	T	p.I487fs
LIHC	TCGA-BC-A112-01	EIF2A	ENST00000477551.1,ENST00000465535.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150285983:150286079:150289744:150290316:150293435:150293549,	150289745	150290316	150289971	150289972	Frame_Shift_Ins	-	A	p.VK346fs
LIHC	TCGA-BC-A112-01	EIF2A	ENST00000477551.1,ENST00000465535.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150285983:150286079:150289744:150290316:150293435:150293549,	150289745	150290316	150290014	150290015	Frame_Shift_Ins	-	C	p.I361fs
LIHC	TCGA-BC-A112-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877724	150877725	Frame_Shift_Ins	-	C	p.P315fs
LIHC	TCGA-BC-A112-01	SLC33A1	ENST00000475842.1,ENST00000468581.1,ENST00000359479.3,ENST00000392845.3	chr3	155547644:155547692:155551256:155551374:155551645:155551830,	155551257	155551374	155551308	155551309	Frame_Shift_Ins	-	C	p.V405fs
LIHC	TCGA-BC-A112-01	SLC33A1	ENST00000359479.3	chr3	155551645:155551830:155560220:155560408:155571011:155571106,	155560221	155560408	155560395	155560396	Frame_Shift_Ins	-	A	p.L263fs
LIHC	TCGA-BC-A112-01	KCNMB3	ENST00000392686.2	chr3	178957608:178957852:178960596:178961072:178962282:178962481,	178960597	178961072	178960976	178960977	Frame_Shift_Ins	-	G	p.PF181fs
LIHC	TCGA-BC-A112-01	YEATS2	ENST00000305135.5	chr3	183469860:183470041:183471913:183472153:183474315:183474477,	183471914	183472153	183472003	183472004	Frame_Shift_Ins	-	C	p.P414fs
LIHC	TCGA-BC-A112-01	YEATS2	ENST00000432781.1,ENST00000305135.5	chr3	183493778:183493911:183495329:183495488:183503912:183504089,	183495330	183495488	183495335	183495336	Frame_Shift_Ins	-	T	p.TF861fs
LIHC	TCGA-BC-A112-01	ABCC5	ENST00000437205.1,ENST00000334444.6,ENST00000265586.6	chr3	183670873:183671058:183677520:183677623:183679298:183679442,	183677521	183677623	183677609	183677610	Frame_Shift_Ins	-	T	p.R798fs
LIHC	TCGA-BC-A112-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452589	195452590	Frame_Shift_Ins	-	C	p.A201fs
LIHC	TCGA-BC-A112-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452756	195452757	Frame_Shift_Ins	-	A	p.N257fs
LIHC	TCGA-BC-A112-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195513596	195513597	Frame_Shift_Ins	-	A	p.H1619fs
LIHC	TCGA-BC-A112-01	TNK2	ENST00000464041.1,ENST00000381916.2,ENST00000468819.1,ENST00000392400.1,ENST00000316664.3,ENST00000428187.1,ENST00000439230.1,ENST00000333602.6	chr3	195610027:195610180:195611682:195611904:195613847:195613918,	195611683	195611904	195611710	195611711	Frame_Shift_Ins	-	C	p.G143fs
LIHC	TCGA-BC-A112-01	GRK4	ENST00000504933.1,ENST00000398051.4,ENST00000345167.6,ENST00000398052.4	chr4	2993941:2994019:3005957:3006061:3009462:3009555,	3005958	3006061	3006035	3006036	Frame_Shift_Ins	-	A	p.SK139fs
LIHC	TCGA-BC-A112-01	LYAR	ENST00000343470.4,ENST00000452476.1	chr4	4281173:4281257:4281368:4281476:4283509:4283624,	4281369	4281476	4281472	4281473	Frame_Shift_Ins	-	T	p.*81fs
LIHC	TCGA-BC-A112-01	EVC	ENST00000264956.6,ENST00000509451.1,ENST00000382674.2	chr4	5731033:5731117:5733151:5733384:5735077:5735162,	5733152	5733384	5733214	5733215	Frame_Shift_Ins	-	C	p.P150fs
LIHC	TCGA-BC-A112-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1	chr4	15572020:15572119:15575772:15575949:15581590:15581794,	15575773	15575949	15575848	15575849	Frame_Shift_Ins	-	G	p.G1224fs
LIHC	TCGA-BC-A112-01	LCORL	ENST00000326877.4	chr4	17882251:17886375:17887690:17887784:17910716:17910968,17847312:17847524:17887690:17887784:17963525:17963655,17847312:17847524:17887690:17887784:17910716:17910968,	17887691	17887784	17887702	17887703	Frame_Shift_Ins	-	T	p.I255fs
LIHC	TCGA-BC-A112-01	RPL9	ENST00000511643.1,ENST00000508595.1,ENST00000506581.1,ENST00000503277.1,ENST00000514842.1,ENST00000295955.9,ENST00000449470.2	chr4	39455790:39455845:39456152:39456269:39456483:39456549,	39456153	39456269	39456189	39456190	Frame_Shift_Ins	-	T	p.N185fs
LIHC	TCGA-BC-A112-01	LIAS	ENST00000261434.3,ENST00000513731.1,ENST00000381846.1	chr4	39472855:39472926:39474719:39474831:39478682:39478775,	39474720	39474831	39474741	39474742	Frame_Shift_Ins	-	A	p.K326fs
LIHC	TCGA-BC-A112-01	APBB2	ENST00000506352.1,ENST00000295974.8,ENST00000513140.1	chr4	40946881:40947090:41015599:41016415:41035252:41035321,40946881:40947087:41015599:41016415:41035252:41035321,	41015600	41016415	41015897	41015898	Frame_Shift_Ins	-	T	p.Q180fs
LIHC	TCGA-BC-A112-01	ATP8A1	ENST00000381668.5,ENST00000514372.1,ENST00000506602.1,ENST00000264449.10	chr4	42457541:42457616:42466706:42466817:42466909:42467092,	42466707	42466817	42466811	42466812	Frame_Shift_Ins	-	T	p.F839fs
LIHC	TCGA-BC-A112-01	CORIN	ENST00000273857.4,ENST00000502252.1,ENST00000508498.1,ENST00000504584.1,ENST00000505909.1	chr4	47647097:47647211:47655569:47655677:47663727:47663873,	47655570	47655677	47655655	47655656	Frame_Shift_Ins	-	T	p.M586fs
LIHC	TCGA-BC-A112-01	CORIN	ENST00000273857.4,ENST00000502726.1,ENST00000503821.1,ENST00000504584.1,ENST00000505909.1	chr4	47765395:47765603:47788741:47788942:47808919:47809064,	47788742	47788942	47788896	47788897	Frame_Shift_Ins	-	A	p.C85fs
LIHC	TCGA-BC-A112-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000514617.1,ENST00000507873.2,ENST00000502925.1	chr4	48550706:48550810:48551489:48551640:48552608:48552721,	48551490	48551640	48551517	48551518	Frame_Shift_Ins	-	T	p.V1586fs
LIHC	TCGA-BC-A112-01	CWH43	ENST00000513409.1,ENST00000226432.4	chr4	49000476:49000565:49005751:49006009:49009217:49009343,	49005752	49006009	49005912	49005913	Frame_Shift_Ins	-	T	p.L322fs
LIHC	TCGA-BC-A112-01	CLOCK	ENST00000309964.4,ENST00000381322.1,ENST00000513440.1	chr4	56304448:56304574:56308598:56308801:56309853:56309922,56304448:56304704:56308598:56308801:56309853:56309922,	56308599	56308801	56308790	56308791	Frame_Shift_Ins	-	T	p.S638fs
LIHC	TCGA-BC-A112-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56762882:56763066:56765850:56766050:56768509:56768704,	56765851	56766050	56766022	56766023	Frame_Shift_Ins	-	T	p.F770fs
LIHC	TCGA-BC-A112-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1,ENST00000513376.1	chr4	57237616:57237809:57244313:57244630:57248642:57248763,	57244314	57244630	57244482	57244483	Frame_Shift_Ins	-	T	p.K167fs
LIHC	TCGA-BC-A112-01	AREG	ENST00000395748.3,ENST00000502307.1,ENST00000264487.2	chr4	75312250:75312499:75314763:75314965:75316096:75316249,	75314764	75314965	75314846	75314847	Frame_Shift_Ins	-	A	p.GK131fs
LIHC	TCGA-BC-A112-01	SHROOM3	ENST00000296043.6	chr4	77680697:77680848:77691778:77692051:77699961:77704406,	77691779	77692051	77691943	77691944	Frame_Shift_Ins	-	G	p.MG1838fs
LIHC	TCGA-BC-A112-01	HNRNPD	ENST00000513584.1,ENST00000541060.1	chr4	83278589:83278597:83279811:83279973:83280623:83280792,83278589:83278597:83279811:83279973:83294598:83294639,	83279812	83279973	83279826	83279827	Frame_Shift_Ins	-	A	p.LW202fs
LIHC	TCGA-BC-A112-01	HPSE	ENST00000513463.1	chr4	84231183:84231231:84231874:84232043:84234266:84234440,84231183:84231231:84231874:84232043:84240496:84240622,	84231875	84232043	84231999	84232000	Frame_Shift_Ins	-	C	p.A240fs
LIHC	TCGA-BC-A112-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157384	106157385	Frame_Shift_Ins	-	C	p.P762fs
LIHC	TCGA-BC-A112-01	INTS12	ENST00000451321.2,ENST00000394735.1,ENST00000340139.5	chr4	106607848:106607995:106613132:106613292:106614455:106614643,	106613133	106613292	106613209	106613210	Frame_Shift_Ins	-	G	p.G194fs
LIHC	TCGA-BC-A112-01	SGMS2	ENST00000394684.4	chr4	108779627:108779709:108816465:108817164:108820730:108820848,	108816466	108817164	108816940	108816941	Frame_Shift_Ins	-	A	p.N78fs
LIHC	TCGA-BC-A112-01	ELOVL6	ENST00000302274.3,ENST00000506625.1,ENST00000394607.3	chr4	110972881:110972918:110980758:110980910:111026652:111026784,	110980759	110980910	110980865	110980866	Frame_Shift_Ins	-	A	p.Y89fs
LIHC	TCGA-BC-A112-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823618	114823619	Frame_Shift_Ins	-	G	p.R538fs
LIHC	TCGA-BC-A112-01	ANXA5	ENST00000509648.1,ENST00000515717.1,ENST00000296511.5,ENST00000506395.1,ENST00000515017.1,ENST00000501272.2	chr4	122591108:122591167:122592701:122592797:122593687:122593713,	122592702	122592797	122592792	122592793	Frame_Shift_Ins	-	A	p.LQ210fs
LIHC	TCGA-BC-A112-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122749556:122749660:122749773:122749883:122754385:122754550,	122749774	122749883	122749864	122749865	Frame_Shift_Ins	-	A	p.LI565fs
LIHC	TCGA-BC-A112-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000354456.3	chr4	129035724:129035897:129042980:129043343:129083348:129083472,	129042981	129043343	129043193	129043194	Frame_Shift_Ins	-	A	p.VK458fs
LIHC	TCGA-BC-A112-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144134888	144134889	Frame_Shift_Ins	-	A	p.K587fs
LIHC	TCGA-BC-A112-01	GAB1	ENST00000262994.4,ENST00000262995.4,ENST00000505913.1	chr4	144354643:144354869:144359151:144359753:144360954:144361040,	144359152	144359753	144359218	144359219	Frame_Shift_Ins	-	A	p.QK220fs
LIHC	TCGA-BC-A112-01	SMAD1	ENST00000515385.1,ENST00000394092.2,ENST00000302085.4	chr4	146463733:146463850:146467854:146468076:146474935:146475069,	146467855	146468076	146468049	146468050	Frame_Shift_Ins	-	A	p.K324fs
LIHC	TCGA-BC-A112-01	ARHGAP10	ENST00000336498.3	chr4	148768301:148768373:148778703:148778805:148785996:148786107,	148778704	148778805	148778707	148778708	Frame_Shift_Ins	-	A	p.K130fs
LIHC	TCGA-BC-A112-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000478503.2,ENST00000514152.1	chr4	152065371:152065440:152069073:152069338:152070651:152070713,152065061:152065202:152069073:152069338:152070651:152070713,	152069074	152069338	152069139	152069140	Frame_Shift_Ins	-	A	p.L392fs
LIHC	TCGA-BC-A112-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184931964	184931965	Frame_Shift_Ins	-	A	p.Q658fs
LIHC	TCGA-BC-A112-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539633	187539634	Frame_Shift_Ins	-	T	p.N2702fs
LIHC	TCGA-BC-A112-01	DNAH5	ENST00000265104.4	chr5	13708231:13708444:13714513:13714729:13716595:13716799,	13714514	13714729	13714593	13714594	Frame_Shift_Ins	-	C	p.*4349fs
LIHC	TCGA-BC-A112-01	TRIO	ENST00000537187.1,ENST00000510281.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14482726:14482882:14485177:14485355:14487572:14487839,	14485178	14485355	14485344	14485345	Frame_Shift_Ins	-	T	p.I2275fs
LIHC	TCGA-BC-A112-01	CDH18	ENST00000502796.1	chr5	19473723:19473825:19483409:19483552:19503100:19503218,	19483410	19483552	19483541	19483542	Frame_Shift_Ins	-	G	p.H584fs
LIHC	TCGA-BC-A112-01	CDH18	ENST00000382275.1,ENST00000507958.1,ENST00000274170.4	chr5	19473723:19473825:19483409:19483661:19503100:19503218,	19483410	19483661	19483541	19483542	Frame_Shift_Ins	-	G	p.H584fs
LIHC	TCGA-BC-A112-01	CDH18	ENST00000506372.1	chr5	19473723:19473825:19483409:19483555:19503100:19503218,	19483410	19483555	19483541	19483542	Frame_Shift_Ins	-	G	p.H584fs
LIHC	TCGA-BC-A112-01	SPEF2	ENST00000510777.1	chr5	35641532:35641785:35646768:35646909:35649462:35649527,	35646769	35646909	35646888	35646889	Frame_Shift_Ins	-	A	p.IK235fs
LIHC	TCGA-BC-A112-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	36984777:36986403:36995723:36995906:37000474:37000608,	36995724	36995906	36995755	36995756	Frame_Shift_Ins	-	C	p.FP1051fs
LIHC	TCGA-BC-A112-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	37027460:37027514:37036480:37036589:37038703:37038840,	37036481	37036589	37036497	37036498	Frame_Shift_Ins	-	G	p.G1960fs
LIHC	TCGA-BC-A112-01	LIFR	ENST00000503088.1,ENST00000263409.4,ENST00000453190.2	chr5	38499614:38499685:38502738:38502901:38504077:38504223,	38502739	38502901	38502883	38502884	Frame_Shift_Ins	-	T	p.S486fs
LIHC	TCGA-BC-A112-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64867920	64867921	Frame_Shift_Ins	-	C	p.S259fs
LIHC	TCGA-BC-A112-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715648	68715649	Frame_Shift_Ins	-	C	p.P146fs
LIHC	TCGA-BC-A112-01	OCLN	ENST00000396442.2,ENST00000355237.2,ENST00000538151.1	chr5	68809774:68809936:68830520:68830666:68840730:68840946,	68830521	68830666	68830523	68830524	Frame_Shift_Ins	-	A	p.VK298fs
LIHC	TCGA-BC-A112-01	FCHO2	ENST00000508431.1,ENST00000341845.6,ENST00000512348.1,ENST00000430046.2	chr5	72354259:72354351:72359667:72359771:72364476:72364606,	72359668	72359771	72359766	72359767	Frame_Shift_Ins	-	A	p.N482fs
LIHC	TCGA-BC-A112-01	ARHGEF28	ENST00000426542.2,ENST00000287898.5,ENST00000296794.6,ENST00000513042.2,ENST00000296799.4,ENST00000545377.1,ENST00000437974.1,ENST00000510312.2	chr5	73179591:73179709:73181674:73181929:73183427:73183504,	73181675	73181929	73181766	73181767	Frame_Shift_Ins	-	A	p.EK1049fs
LIHC	TCGA-BC-A112-01	POLK	ENST00000509126.1	chr5	74886177:74886265:74892046:74893003:74893571:74893614,	74892047	74893003	74892162	74892163	Frame_Shift_Ins	-	A	p.N549fs
LIHC	TCGA-BC-A112-01	DMGDH	ENST00000380311.4,ENST00000255189.3,ENST00000523201.1,ENST00000540686.1,ENST00000517853.1,ENST00000523732.1,ENST00000518477.1	chr5	78322258:78322404:78324255:78324473:78325726:78325857,	78324256	78324473	78324312	78324313	Frame_Shift_Ins	-	T	p.Q659fs
LIHC	TCGA-BC-A112-01	BHMT2	ENST00000255192.3,ENST00000519743.1	chr5	78375224:78375283:78376509:78376701:78378631:78378779,	78376510	78376701	78376663	78376664	Frame_Shift_Ins	-	T	p.F138fs
LIHC	TCGA-BC-A112-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816455	82816456	Frame_Shift_Ins	-	A	p.K777fs
LIHC	TCGA-BC-A112-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659215	86659216	Frame_Shift_Ins	-	C	p.P325fs
LIHC	TCGA-BC-A112-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290521	108290522	Frame_Shift_Ins	-	A	p.*474fs
LIHC	TCGA-BC-A112-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290521	108290522	Frame_Shift_Ins	-	A	p.*474fs
LIHC	TCGA-BC-A112-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506449	118506450	Frame_Shift_Ins	-	T	p.L1988fs
LIHC	TCGA-BC-A112-01	PRDM6	ENST00000434521.1	chr5	122435440:122435656:122506459:122506802:122515840:122515979,	122506460	122506802	122506650	122506651	Frame_Shift_Ins	-	A	p.VK448fs
LIHC	TCGA-BC-A112-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984683	123984684	Frame_Shift_Ins	-	C	p.Q465fs
LIHC	TCGA-BC-A112-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124079921	124079922	Frame_Shift_Ins	-	C	p.D254fs
LIHC	TCGA-BC-A112-01	PHAX	ENST00000297540.4,ENST00000511371.1	chr5	125944055:125944176:125952941:125953025:125960266:125960901,	125952942	125953025	125952989	125952990	Frame_Shift_Ins	-	A	p.LK293fs
LIHC	TCGA-BC-A112-01	ISOC1	ENST00000173527.5	chr5	128430443:128430768:128440648:128440768:128440877:128441040,	128440649	128440768	128440655	128440656	Frame_Shift_Ins	-	C	p.P106fs
LIHC	TCGA-BC-A112-01	RAD50	ENST00000265335.6,ENST00000453394.1,ENST00000378823.3,ENST00000533482.1	chr5	131927568:131927726:131930560:131930736:131931264:131931460,	131930561	131930736	131930715	131930716	Frame_Shift_Ins	-	A	p.K511fs
LIHC	TCGA-BC-A112-01	SHROOM1	ENST00000378676.1	chr5	132159314:132159456:132159541:132160111:132160306:132160308,132159314:132159456:132159541:132160111:132160709:132160765,	132159542	132160111	132159983	132159984	Frame_Shift_Ins	-	C	p.E457fs
LIHC	TCGA-BC-A112-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232257	132232258	Frame_Shift_Ins	-	A	p.LA688fs
LIHC	TCGA-BC-A112-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316487	133316488	Frame_Shift_Ins	-	T	p.N161fs
LIHC	TCGA-BC-A112-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316499	133316500	Frame_Shift_Ins	-	A	p.LD157fs
LIHC	TCGA-BC-A112-01	BRD8	ENST00000411594.2,ENST00000230901.5,ENST00000441656.1,ENST00000454473.1,ENST00000512140.1,ENST00000402931.1,ENST00000418329.1,ENST00000254900.5,ENST00000506167.1,ENST00000455658.2	chr5	137500008:137500102:137500402:137500855:137501516:137501651,	137500403	137500855	137500563	137500564	Frame_Shift_Ins	-	T	p.S524fs
LIHC	TCGA-BC-A112-01	BRD8	ENST00000411594.2,ENST00000230901.5,ENST00000441656.1,ENST00000454473.1,ENST00000512140.1,ENST00000402931.1,ENST00000418329.1,ENST00000254900.5,ENST00000506167.1,ENST00000455658.2	chr5	137500008:137500102:137500402:137500855:137501516:137501651,	137500403	137500855	137500759	137500760	Frame_Shift_Ins	-	G	p.PG458fs
LIHC	TCGA-BC-A112-01	BRD8	ENST00000411594.2,ENST00000230901.5,ENST00000441656.1,ENST00000454473.1,ENST00000512140.1,ENST00000402931.1,ENST00000418329.1,ENST00000254900.5,ENST00000506167.1,ENST00000455658.2	chr5	137500008:137500102:137500402:137500855:137501516:137501651,	137500403	137500855	137500787	137500788	Frame_Shift_Ins	-	T	p.R449fs
LIHC	TCGA-BC-A112-01	RELL2	ENST00000297164.3,ENST00000518856.1,ENST00000444782.1,ENST00000517794.1,ENST00000521367.1	chr5	141018361:141018427:141018521:141018588:141019030:141019196,	141018522	141018588	141018549	141018550	Frame_Shift_Ins	-	G	p.R93fs
LIHC	TCGA-BC-A112-01	ARAP3	ENST00000513878.1,ENST00000508305.1,ENST00000239440.4	chr5	141051461:141051547:141051668:141051868:141052118:141052225,	141051669	141051868	141051847	141051848	Frame_Shift_Ins	-	C	p.G469fs
LIHC	TCGA-BC-A112-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243029	141243030	Frame_Shift_Ins	-	G	p.Q956fs
LIHC	TCGA-BC-A112-01	RNF14	ENST00000394514.2	chr5	141354368:141354520:141357867:141358395:141359687:141359842,141353147:141353307:141357867:141358395:141359687:141359842,	141357868	141358395	141358014	141358015	Frame_Shift_Ins	-	A	p.QK151fs
LIHC	TCGA-BC-A112-01	ARHGAP26	ENST00000378004.3	chr5	142526795:142526946:142586762:142586873:142593561:142593653,	142586763	142586873	142586787	142586788	Frame_Shift_Ins	-	C	p.SP671fs
LIHC	TCGA-BC-A112-01	ARHGAP26	ENST00000274498.4	chr5	142526795:142526946:142586762:142587038:142593561:142593653,	142586763	142587038	142586787	142586788	Frame_Shift_Ins	-	C	p.SP671fs
LIHC	TCGA-BC-A112-01	FBXO38	ENST00000509699.2,ENST00000513826.1,ENST00000340253.5,ENST00000502629.1,ENST00000296701.6,ENST00000394370.3,ENST00000508326.1,ENST00000521160.1	chr5	147778577:147778695:147781544:147781708:147781910:147781996,	147781545	147781708	147781643	147781644	Frame_Shift_Ins	-	G	p.G121fs
LIHC	TCGA-BC-A112-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028233	150028234	Frame_Shift_Ins	-	A	p.T377fs
LIHC	TCGA-BC-A112-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028928	150028929	Frame_Shift_Ins	-	G	p.R608fs
LIHC	TCGA-BC-A112-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150923356	150923357	Frame_Shift_Ins	-	T	p.T2444fs
LIHC	TCGA-BC-A112-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630612	158630613	Frame_Shift_Ins	-	C	p.E5fs
LIHC	TCGA-BC-A112-01	FABP6	ENST00000523955.1,ENST00000393980.4,ENST00000393982.1,ENST00000402432.3	chr5	159656552:159656631:159659104:159659280:159661826:159661916,	159659105	159659280	159659131	159659132	Frame_Shift_Ins	-	C	p.P81fs
LIHC	TCGA-BC-A112-01	TSPAN17	ENST00000310032.8,ENST00000405525.2,ENST00000504168.1,ENST00000503045.1,ENST00000515708.1,ENST00000508164.1,ENST00000507471.1	chr5	176079812:176079914:176081895:176082021:176083078:176083126,	176081896	176082021	176082014	176082015	Frame_Shift_Ins	-	C	p.A192fs
LIHC	TCGA-BC-A112-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637107	176637108	Frame_Shift_Ins	-	T	p.LF569fs
LIHC	TCGA-BC-A112-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637121	176637122	Frame_Shift_Ins	-	A	p.E574fs
LIHC	TCGA-BC-A112-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637437	176637438	Frame_Shift_Ins	-	A	p.QK679fs
LIHC	TCGA-BC-A112-01	PHYKPL	ENST00000493197.1,ENST00000506045.1,ENST00000393488.2,ENST00000481436.1,ENST00000476487.1,ENST00000308158.5,ENST00000474052.1,ENST00000489262.1	chr5	177641804:177641886:177642276:177642431:177649355:177649477,	177642277	177642431	177642304	177642305	Frame_Shift_Ins	-	T	p.Q352fs
LIHC	TCGA-BC-A112-01	HNRNPH1	ENST00000521116.1	chr5	179048371:179048398:179050037:179050165:179061065:179061158,	179050038	179050165	179050040	179050041	Frame_Shift_Ins	-	A	p.*32fs
LIHC	TCGA-BC-A112-01	TBC1D9B	ENST00000356834.3,ENST00000355235.3	chr5	179306627:179306789:179315102:179315312:179318378:179318586,	179315103	179315312	179315294	179315295	Frame_Shift_Ins	-	T	p.N*354fs
LIHC	TCGA-BC-A112-01	RIOK1	ENST00000379834.2,ENST00000475351.1	chr6	7395285:7395376:7396935:7397005:7398930:7398973,	7396936	7397005	7396989	7396990	Frame_Shift_Ins	-	A	p.K141fs
LIHC	TCGA-BC-A112-01	RIOK1	ENST00000379834.2	chr6	7402835:7402948:7403049:7403130:7404173:7404260,	7403050	7403130	7403105	7403106	Frame_Shift_Ins	-	A	p.K248fs
LIHC	TCGA-BC-A112-01	SIRT5	ENST00000379262.4,ENST00000606117.1,ENST00000397350.2,ENST00000379250.5	chr6	13597194:13597248:13599263:13599387:13601065:13601181,	13599264	13599387	13599282	13599283	Frame_Shift_Ins	-	G	p.WG212fs
LIHC	TCGA-BC-A112-01	CAP2	ENST00000489374.1	chr6	17514079:17514185:17539499:17539689:17541203:17541379,17507399:17507543:17539499:17539689:17541203:17541379,17463226:17463304:17539499:17539689:17541203:17541379,	17539500	17539689	17539616	17539617	Frame_Shift_Ins	-	A	p.GK251fs
LIHC	TCGA-BC-A112-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17764604	17764605	Frame_Shift_Ins	-	G	p.PG1670fs
LIHC	TCGA-BC-A112-01	CDKAL1	ENST00000378624.4,ENST00000274695.4,ENST00000378610.1	chr6	20739749:20739846:20758825:20758874:20781375:20781496,	20758826	20758874	20758870	20758871	Frame_Shift_Ins	-	A	p.R172fs
LIHC	TCGA-BC-A112-01	CDKAL1	ENST00000378624.4,ENST00000274695.4,ENST00000378610.1	chr6	20758825:20758874:20781375:20781496:20846305:20846409,	20781376	20781496	20781401	20781402	Frame_Shift_Ins	-	A	p.QK181fs
LIHC	TCGA-BC-A112-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26093169	26093170	Frame_Shift_Ins	-	C	p.HP291fs
LIHC	TCGA-BC-A112-01	TRIM31	ENST00000376734.3,ENST00000540829.1	chr6	30078224:30078455:30079424:30079520:30080165:30080252,	30079425	30079520	30079517	30079518	Frame_Shift_Ins	-	C	p.D141fs
LIHC	TCGA-BC-A112-01	MICA	ENST00000449934.2	chr6	31378319:31378574:31378848:31379136:31379723:31379839,	31378849	31379136	31378872	31378873	Frame_Shift_Ins	-	G	p.G117fs
LIHC	TCGA-BC-A112-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31603170:31603242:31603358:31603526:31603743:31603826,	31603359	31603526	31603491	31603492	Frame_Shift_Ins	-	T	p.F1836fs
LIHC	TCGA-BC-A112-01	VWA7	ENST00000447450.1,ENST00000467576.1,ENST00000375686.3	chr6	31743940:31744019:31744322:31744571:31744885:31745049,	31744323	31744571	31744534	31744535	Frame_Shift_Ins	-	G	p.I8fs
LIHC	TCGA-BC-A112-01	NELFE	ENST00000492185.1,ENST00000481121.1,ENST00000436289.2,ENST00000454913.1,ENST00000375425.5,ENST00000375429.3,ENST00000441998.1,ENST00000444811.2,ENST00000426722.1,ENST00000488426.1	chr6	31924469:31924615:31924717:31924787:31926148:31926231,	31924718	31924787	31924782	31924783	Frame_Shift_Ins	-	T	p.S27fs
LIHC	TCGA-BC-A112-01	PRRT1	ENST00000211413.5	chr6	32117313:32117499:32118144:32118683:32119585:32119676,	32118145	32118683	32118514	32118515	Frame_Shift_Ins	-	C	p.A63fs
LIHC	TCGA-BC-A112-01	BRD2	ENST00000395289.2,ENST00000374831.4,ENST00000607833.1,ENST00000495733.1,ENST00000374825.4,ENST00000395287.1	chr6	32940506:32940704:32942238:32942542:32943160:32943298,	32942239	32942542	32942416	32942417	Frame_Shift_Ins	-	A	p.PK69fs
LIHC	TCGA-BC-A112-01	COL11A2	ENST00000357486.1,ENST00000374708.4,ENST00000374713.1,ENST00000374712.1,ENST00000341947.2,ENST00000395197.1,ENST00000361917.1,ENST00000374714.1	chr6	33143350:33143458:33143792:33143846:33144035:33144080,	33143793	33143846	33143844	33143845	Frame_Shift_Ins	-	C	p.G739fs
LIHC	TCGA-BC-A112-01	PFDN6	ENST00000463584.1	chr6	33257950:33258021:33258102:33258227:33258492:33258639,33257950:33258021:33258102:33258227:33264605:33266178,	33258103	33258227	33258206	33258207	Frame_Shift_Ins	-	G	p.R80fs
LIHC	TCGA-BC-A112-01	RGL2	ENST00000497454.1	chr6	33264808:33264892:33266231:33266428:33266646:33266701,	33266232	33266428	33266358	33266359	Frame_Shift_Ins	-	A	p.*10fs
LIHC	TCGA-BC-A112-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33658693:33658886:33659391:33659496:33659577:33659705,	33659392	33659496	33659395	33659396	Frame_Shift_Ins	-	C	p.T2410fs
LIHC	TCGA-BC-A112-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34825900:34827348:34831778:34831975:34835001:34835156,	34831779	34831975	34831802	34831803	Frame_Shift_Ins	-	G	p.G1080fs
LIHC	TCGA-BC-A112-01	TCP11	ENST00000445851.2,ENST00000311875.5,ENST00000394696.4	chr6	35096891:35096959:35108523:35108661:35108981:35109030,35107796:35108002:35108523:35108661:35108981:35109030,35103903:35103995:35108523:35108661:35108981:35109030,	35108524	35108661	35108559	35108560	Frame_Shift_Ins	-	G	p.G43fs
LIHC	TCGA-BC-A112-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38830055:38830234:38831648:38831836:38834366:38834453,	38831649	38831836	38831777	38831778	Frame_Shift_Ins	-	T	p.F1930fs
LIHC	TCGA-BC-A112-01	DAAM2	ENST00000538976.1,ENST00000398904.2,ENST00000274867.4	chr6	39824022:39824246:39828703:39828793:39832208:39832283,	39828704	39828793	39828787	39828788	Frame_Shift_Ins	-	A	p.E85fs
LIHC	TCGA-BC-A112-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42237000	42237001	Frame_Shift_Ins	-	C	p.T110fs
LIHC	TCGA-BC-A112-01	UBR2	ENST00000372899.1,ENST00000372901.1	chr6	42531799:42532135:42541471:42541731:42559888:42559967,	42541472	42541731	42541570	42541571	Frame_Shift_Ins	-	A	p.R60fs
LIHC	TCGA-BC-A112-01	POLH	ENST00000372226.1,ENST00000535400.1,ENST00000372236.4	chr6	43568724:43568828:43571628:43571748:43572351:43572475,	43571629	43571748	43571734	43571735	Frame_Shift_Ins	-	G	p.LG290fs
LIHC	TCGA-BC-A112-01	SUPT3H	ENST00000475057.1,ENST00000306867.5,ENST00000371459.1,ENST00000371460.1,ENST00000371461.2	chr6	44971389:44971529:44982537:44982628:44988282:44988363,	44982538	44982628	44982604	44982605	Frame_Shift_Ins	-	T	p.H111fs
LIHC	TCGA-BC-A112-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51523968	51523969	Frame_Shift_Ins	-	G	p.H3652fs
LIHC	TCGA-BC-A112-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52880880:52881048:52883127:52883299:52884024:52884157,	52883128	52883299	52883139	52883140	Frame_Shift_Ins	-	C	p.T218fs
LIHC	TCGA-BC-A112-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471588	56471589	Frame_Shift_Ins	-	A	p.*2580fs
LIHC	TCGA-BC-A112-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56472126	56472127	Frame_Shift_Ins	-	G	p.A2401fs
LIHC	TCGA-BC-A112-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56472828	56472829	Frame_Shift_Ins	-	T	p.NI2166fs
LIHC	TCGA-BC-A112-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56485019	56485020	Frame_Shift_Ins	-	T	p.K1271fs
LIHC	TCGA-BC-A112-01	COL9A1	ENST00000357250.6,ENST00000370496.3	chr6	70993439:70993523:71003869:71004266:71009745:71009878,	71003870	71004266	71004260	71004261	Frame_Shift_Ins	-	A	p.L102fs
LIHC	TCGA-BC-A112-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412482	76412483	Frame_Shift_Ins	-	T	p.F804fs
LIHC	TCGA-BC-A112-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82923943:82924546:82925792:82925967:82927676:82927854,	82925793	82925967	82925796	82925797	Frame_Shift_Ins	-	T	p.K533fs
LIHC	TCGA-BC-A112-01	COQ3	ENST00000369240.1,ENST00000369242.1	chr6	99817279:99817696:99819303:99819463:99823815:99824058,99817279:99817696:99819303:99819463:99825261:99825330,	99819304	99819463	99819393	99819394	Frame_Shift_Ins	-	A	p.R267fs
LIHC	TCGA-BC-A112-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99894171	99894172	Frame_Shift_Ins	-	T	p.S493fs
LIHC	TCGA-BC-A112-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99894303	99894304	Frame_Shift_Ins	-	T	p.NV448fs
LIHC	TCGA-BC-A112-01	SEC63	ENST00000473746.1,ENST00000369002.4	chr6	108194088:108194116:108197767:108197866:108202352:108202454,	108197768	108197866	108197860	108197861	Frame_Shift_Ins	-	T	p.R648fs
LIHC	TCGA-BC-A112-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108985309	108985310	Frame_Shift_Ins	-	C	p.P425fs
LIHC	TCGA-BC-A112-01	PPIL6	ENST00000440797.2,ENST00000447468.3,ENST00000521072.2	chr6	109748296:109748359:109752359:109752548:109761658:109761707,109748296:109748359:109752359:109752548:109757306:109757402,	109752360	109752548	109752537	109752538	Frame_Shift_Ins	-	T	p.R81fs
LIHC	TCGA-BC-A112-01	SLC22A16	ENST00000330550.4	chr6	110768075:110768193:110777740:110778006:110778102:110778220,	110777741	110778006	110777757	110777758	Frame_Shift_Ins	-	A	p.LL172fs
LIHC	TCGA-BC-A112-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111632271:111632462:111634554:111634692:111636469:111636584,	111634555	111634692	111634599	111634600	Frame_Shift_Ins	-	T	p.N2776fs
LIHC	TCGA-BC-A112-01	GOPC	ENST00000052569.6	chr6	117896343:117896515:117900062:117900227:117923166:117923527,	117900063	117900227	117900168	117900169	Frame_Shift_Ins	-	A	p.*115fs
LIHC	TCGA-BC-A112-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118886846	118886847	Frame_Shift_Ins	-	A	p.H289fs
LIHC	TCGA-BC-A112-01	FAM184A	ENST00000368475.4,ENST00000521531.1,ENST00000352896.5,ENST00000522284.1,ENST00000338891.7	chr6	119337911:119338109:119341142:119341324:119344109:119344245,	119341143	119341324	119341253	119341254	Frame_Shift_Ins	-	T	p.NE407fs
LIHC	TCGA-BC-A112-01	EYA4	ENST00000531861.1,ENST00000367895.5,ENST00000355286.6,ENST00000531901.1,ENST00000525849.1,ENST00000430974.2,ENST00000452339.2,ENST00000355167.3,ENST00000431403.2	chr6	133782251:133782318:133783472:133783615:133783758:133783872,	133783473	133783615	133783544	133783545	Frame_Shift_Ins	-	G	p.W170fs
LIHC	TCGA-BC-A112-01	EYA4	ENST00000421413.2	chr6	133782251:133782318:133783501:133783615:133783758:133783872,	133783502	133783615	133783544	133783545	Frame_Shift_Ins	-	G	p.W170fs
LIHC	TCGA-BC-A112-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143093093	143093094	Frame_Shift_Ins	-	A	p.P928fs
LIHC	TCGA-BC-A112-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094744	143094745	Frame_Shift_Ins	-	T	p.T378fs
LIHC	TCGA-BC-A112-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094902	143094903	Frame_Shift_Ins	-	C	p.A325fs
LIHC	TCGA-BC-A112-01	RMND1	ENST00000367303.4	chr6	151757580:151757689:151766442:151766960:151773150:151773254,	151766443	151766960	151766838	151766839	Frame_Shift_Ins	-	A	p.L36fs
LIHC	TCGA-BC-A112-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155143409:155143543:155145367:155145512:155148305:155148374,	155145368	155145512	155145471	155145472	Frame_Shift_Ins	-	T	p.L677fs
LIHC	TCGA-BC-A112-01	ARID1B	ENST00000367148.1,ENST00000275248.4,ENST00000414678.2	chr6	157100566:157100605:157150360:157150555:157222509:157222659,	157150361	157150555	157150519	157150520	Frame_Shift_Ins	-	G	p.PG567fs
LIHC	TCGA-BC-A112-01	SYNJ2	ENST00000367121.3,ENST00000367122.2,ENST00000355585.4	chr6	158492633:158492826:158495611:158495770:158497657:158497814,	158495612	158495770	158495766	158495767	Frame_Shift_Ins	-	A	p.E763fs
LIHC	TCGA-BC-A112-01	SYNJ2	ENST00000367121.3,ENST00000367122.2,ENST00000355585.4	chr6	158497657:158497814:158499195:158499313:158502140:158502359,	158499196	158499313	158499203	158499204	Frame_Shift_Ins	-	C	p.Q820fs
LIHC	TCGA-BC-A112-01	SFT2D1	ENST00000478705.1,ENST00000487841.1,ENST00000488773.1,ENST00000361731.3	chr6	166741763:166741845:166742994:166743077:166743648:166743735,	166742995	166743077	166743075	166743076	Frame_Shift_Ins	-	C	p.D51fs
LIHC	TCGA-BC-A112-01	FGFR1OP	ENST00000349556.4,ENST00000476078.1,ENST00000366847.4,ENST00000494781.1	chr6	167416680:167416735:167417210:167417299:167417751:167417792,	167417211	167417299	167417248	167417249	Frame_Shift_Ins	-	T	p.HF83fs
LIHC	TCGA-BC-A112-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5781313	5781314	Frame_Shift_Ins	-	A	p.S112fs
LIHC	TCGA-BC-A112-01	DAGLB	ENST00000436575.1,ENST00000297056.6	chr7	6472467:6472590:6474392:6474651:6485583:6485735,6472467:6472590:6474392:6474651:6475992:6476164,	6474393	6474651	6474560	6474561	Frame_Shift_Ins	-	G	p.P171fs
LIHC	TCGA-BC-A112-01	MIOS	ENST00000405785.1,ENST00000340080.4	chr7	7613728:7613827:7622748:7623003:7625266:7625436,	7622749	7623003	7622805	7622806	Frame_Shift_Ins	-	A	p.K484fs
LIHC	TCGA-BC-A112-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17378705	17378706	Frame_Shift_Ins	-	T	p.L419fs
LIHC	TCGA-BC-A112-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199445	20199446	Frame_Shift_Ins	-	T	p.G180fs
LIHC	TCGA-BC-A112-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21781544:21781784:21784055:21784217:21784487:21784537,	21784056	21784217	21784201	21784202	Frame_Shift_Ins	-	T	p.V2774fs
LIHC	TCGA-BC-A112-01	STEAP1B	ENST00000483679.1,ENST00000424363.1,ENST00000439708.1,ENST00000404369.4	chr7	22532295:22532348:22532942:22533455:22534390:22534505,	22532943	22533455	22533450	22533451	Frame_Shift_Ins	-	T	p.G30fs
LIHC	TCGA-BC-A112-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775340	23775341	Frame_Shift_Ins	-	A	p.K200fs
LIHC	TCGA-BC-A112-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26246020	26246021	Frame_Shift_Ins	-	A	p.RK19fs
LIHC	TCGA-BC-A112-01	HOXA3	ENST00000317201.2	chr7	27146630:27148339:27149733:27150379:27162177:27162261,	27149734	27150379	27149879	27149880	Frame_Shift_Ins	-	G	p.P127fs
LIHC	TCGA-BC-A112-01	CHN2	ENST00000424025.2,ENST00000412711.2,ENST00000467441.1,ENST00000446446.1,ENST00000410098.1,ENST00000539389.1,ENST00000439711.2,ENST00000409041.4,ENST00000493906.1,ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000546235.1	chr7	29535567:29535652:29539482:29539656:29544359:29544436,	29539483	29539656	29539523	29539524	Frame_Shift_Ins	-	C	p.Q261fs
LIHC	TCGA-BC-A112-01	POU6F2	ENST00000416452.1	chr7	39472675:39472882:39500145:39500314:39503780:39504309,	39500146	39500314	39500207	39500208	Frame_Shift_Ins	-	A	p.S489fs
LIHC	TCGA-BC-A112-01	STK17A	ENST00000319357.5	chr7	43622663:43623048:43635499:43635712:43647854:43647999,	43635500	43635712	43635571	43635572	Frame_Shift_Ins	-	A	p.K93fs
LIHC	TCGA-BC-A112-01	IGFBP3	ENST00000381086.5,ENST00000275521.6	chr7	45956219:45956266:45956811:45957038:45960336:45960439,	45956812	45957038	45956952	45956953	Frame_Shift_Ins	-	G	p.V164fs
LIHC	TCGA-BC-A112-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72410952:72411055:72411355:72411532:72412375:72414061,	72411356	72411532	72411439	72411440	Frame_Shift_Ins	-	C	p.P319fs
LIHC	TCGA-BC-A112-01	GTF2IRD2B	ENST00000398546.3,ENST00000430511.2,ENST00000423666.1,ENST00000312575.7,ENST00000356115.5	chr7	74524751:74524855:74528190:74528329:74536691:74536811,	74528191	74528329	74528274	74528275	Frame_Shift_Ins	-	G	p.M62fs
LIHC	TCGA-BC-A112-01	DTX2	ENST00000446820.2,ENST00000307569.8	chr7	76111824:76112464:76121469:76121570:76126653:76126794,76111824:76112464:76121469:76121570:76129757:76129837,	76121470	76121570	76121478	76121479	Frame_Shift_Ins	-	C	p.P306fs
LIHC	TCGA-BC-A112-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77378827	77378828	Frame_Shift_Ins	-	A	p.K264fs
LIHC	TCGA-BC-A112-01	PHTF2	ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2	chr7	77558469:77558644:77567026:77567155:77569346:77569619,	77567027	77567155	77567038	77567039	Frame_Shift_Ins	-	T	p.A417fs
LIHC	TCGA-BC-A112-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.K147fs
LIHC	TCGA-BC-A112-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.K147fs
LIHC	TCGA-BC-A112-01	DBF4	ENST00000431138.1	chr7	87505914:87506093:87507367:87507448:87514293:87514473,	87507368	87507448	87507388	87507389	Frame_Shift_Ins	-	A	p.K23fs
LIHC	TCGA-BC-A112-01	DBF4	ENST00000486925.1,ENST00000430279.1,ENST00000265728.1	chr7	87505914:87506093:87507367:87507540:87514293:87514473,	87507368	87507540	87507388	87507389	Frame_Shift_Ins	-	A	p.K23fs
LIHC	TCGA-BC-A112-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91709320	91709321	Frame_Shift_Ins	-	A	p.K2637fs
LIHC	TCGA-BC-A112-01	CASD1	ENST00000297273.4	chr7	94164620:94164835:94166783:94167206:94168278:94168368,	94166784	94167206	94167015	94167016	Frame_Shift_Ins	-	C	p.P359fs
LIHC	TCGA-BC-A112-01	DYNC1I1	ENST00000359388.4,ENST00000537881.1	chr7	95439703:95439818:95442558:95442649:95499194:95499310,	95442559	95442649	95442564	95442565	Frame_Shift_Ins	-	C	p.P94fs
LIHC	TCGA-BC-A112-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442564	95442565	Frame_Shift_Ins	-	C	p.P94fs
LIHC	TCGA-BC-A112-01	SLC25A13	ENST00000416240.2,ENST00000265631.5,ENST00000542654.1	chr7	95761054:95761193:95775867:95776008:95799356:95799437,	95775868	95776008	95775879	95775880	Frame_Shift_Ins	-	A	p.LD481fs
LIHC	TCGA-BC-A112-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821302	97821303	Frame_Shift_Ins	-	T	p.F509fs
LIHC	TCGA-BC-A112-01	ZSCAN21	ENST00000543588.1,ENST00000456748.2	chr7	99655320:99655513:99661410:99661602:99661705:99661878,	99661411	99661602	99661551	99661552	Frame_Shift_Ins	-	A	p.K245fs
LIHC	TCGA-BC-A112-01	ZCWPW1	ENST00000398027.2	chr7	99998716:99998959:99999511:99999664:100000138:100000199,	99999512	99999664	99999654	99999655	Frame_Shift_Ins	-	C	p.G494fs
LIHC	TCGA-BC-A112-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028575	100028576	Frame_Shift_Ins	-	C	p.P312fs
LIHC	TCGA-BC-A112-01	POLR2J	ENST00000393794.3	chr7	102113909:102114131:102114777:102114982:102116627:102116717,	102114778	102114982	102114964	102114965	Frame_Shift_Ins	-	G	p.P54fs
LIHC	TCGA-BC-A112-01	POLR2J	ENST00000292614.5	chr7	102113909:102114131:102114807:102114982:102116627:102116717,	102114808	102114982	102114964	102114965	Frame_Shift_Ins	-	G	p.P54fs
LIHC	TCGA-BC-A112-01	POLR2J	ENST00000393794.3	chr7	102113909:102114131:102114777:102114982:102116627:102116717,	102114778	102114982	102114969	102114970	Frame_Shift_Ins	-	T	p.P53fs
LIHC	TCGA-BC-A112-01	POLR2J	ENST00000292614.5	chr7	102113909:102114131:102114807:102114982:102116627:102116717,	102114808	102114982	102114969	102114970	Frame_Shift_Ins	-	T	p.P53fs
LIHC	TCGA-BC-A112-01	RINT1	ENST00000257700.2,ENST00000497979.1	chr7	105195474:105195674:105204179:105204394:105205723:105205904,	105204180	105204394	105204194	105204195	Frame_Shift_Ins	-	C	p.T563fs
LIHC	TCGA-BC-A112-01	BCAP29	ENST00000494086.1	chr7	107234466:107234550:107236313:107236447:107240841:107240880,	107236314	107236447	107236411	107236412	Frame_Shift_Ins	-	A	p.AK148fs
LIHC	TCGA-BC-A112-01	BCAP29	ENST00000482371.1	chr7	107234466:107234550:107236311:107236447:107240841:107240880,107224363:107224427:107236311:107236447:107240841:107240880,	107236312	107236447	107236411	107236412	Frame_Shift_Ins	-	A	p.AK148fs
LIHC	TCGA-BC-A112-01	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619805	114619806	Frame_Shift_Ins	-	T	p.VF154fs
LIHC	TCGA-BC-A112-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116312458:116312631:116339124:116340338:116371721:116371913,	116339125	116340338	116339931	116339932	Frame_Shift_Ins	-	A	p.K265fs
LIHC	TCGA-BC-A112-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000334010.7,ENST00000449022.2	chr7	122081565:122081629:122091427:122091529:122111428:122111616,	122091428	122091529	122091430	122091431	Frame_Shift_Ins	-	A	p.*763fs
LIHC	TCGA-BC-A112-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000334010.7,ENST00000449022.2	chr7	122081565:122081629:122091427:122091529:122111428:122111616,	122091428	122091529	122091451	122091452	Frame_Shift_Ins	-	A	p.*756fs
LIHC	TCGA-BC-A112-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173841	126173842	Frame_Shift_Ins	-	C	p.P532fs
LIHC	TCGA-BC-A112-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138186	128138187	Frame_Shift_Ins	-	T	p.*238fs
LIHC	TCGA-BC-A112-01	STRIP2	ENST00000249344.2	chr7	129120629:129120730:129122682:129122887:129125419:129128240,	129122683	129122887	129122792	129122793	Frame_Shift_Ins	-	G	p.R720fs
LIHC	TCGA-BC-A112-01	TRIM24	ENST00000343526.4,ENST00000464210.1,ENST00000497516.1,ENST00000415680.2	chr7	138199956:138200104:138203933:138204066:138209985:138210059,	138203934	138204066	138204055	138204056	Frame_Shift_Ins	-	A	p.R252fs
LIHC	TCGA-BC-A112-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764204	138764205	Frame_Shift_Ins	-	T	p.E495fs
LIHC	TCGA-BC-A112-01	ZYX	ENST00000449423.2,ENST00000354434.4	chr7	143079340:143079540:143079893:143080415:143085311:143085432,	143079894	143080415	143080154	143080155	Frame_Shift_Ins	-	C	p.GP254fs
LIHC	TCGA-BC-A112-01	AOC1	ENST00000416793.2,ENST00000360937.4	chr7	150549606:150549646:150553542:150555128:150555850:150556136,	150553543	150555128	150554551	150554552	Frame_Shift_Ins	-	T	p.R332fs
LIHC	TCGA-BC-A112-01	NOS3	ENST00000467517.1,ENST00000297494.3,ENST00000484524.1	chr7	150692290:150692402:150693491:150693640:150693850:150694013,	150693492	150693640	150693533	150693534	Frame_Shift_Ins	-	T	p.S105fs
LIHC	TCGA-BC-A112-01	NOS3	ENST00000297494.3,ENST00000461406.1,ENST00000475017.1	chr7	150706485:150706673:150707202:150707375:150707684:150707895,	150707203	150707375	150707210	150707211	Frame_Shift_Ins	-	C	p.PP840fs
LIHC	TCGA-BC-A112-01	SMARCD3	ENST00000262188.8,ENST00000356800.2,ENST00000485592.1,ENST00000392811.2	chr7	150937510:150937608:150938577:150938739:150938962:150939064,	150938578	150938739	150938594	150938595	Frame_Shift_Ins	-	C	p.Q295fs
LIHC	TCGA-BC-A112-01	NUB1	ENST00000413040.2,ENST00000355851.4,ENST00000566856.1,ENST00000568733.1	chr7	151064946:151065054:151065820:151065973:151071182:151071287,	151065821	151065973	151065858	151065859	Frame_Shift_Ins	-	A	p.*402fs
LIHC	TCGA-BC-A112-01	GALNT11	ENST00000430044.2	chr7	151722835:151722969:151791274:151791607:151797882:151798006,	151791275	151791607	151791440	151791441	Frame_Shift_Ins	-	G	p.R43fs
LIHC	TCGA-BC-A112-01	PAXIP1	ENST00000473219.1,ENST00000404141.1,ENST00000475066.1,ENST00000397192.1,ENST00000457196.1	chr7	154760758:154760836:154767405:154768041:154774928:154775042,	154767406	154768041	154767544	154767545	Frame_Shift_Ins	-	A	p.Y312fs
LIHC	TCGA-BC-A112-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556523	155556524	Frame_Shift_Ins	-	T	p.GF999fs
LIHC	TCGA-BC-A112-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556523	155556524	Frame_Shift_Ins	-	T	p.GF999fs
LIHC	TCGA-BC-A112-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37729020	37729021	Frame_Shift_Ins	-	G	p.L1100fs
LIHC	TCGA-BC-A112-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37729998	37729999	Frame_Shift_Ins	-	G	p.P774fs
LIHC	TCGA-BC-A112-01	IDO1	ENST00000519154.1,ENST00000522495.1,ENST00000518237.1,ENST00000521636.1,ENST00000253513.7	chr8	39775403:39775489:39775606:39775726:39776333:39776452,	39775607	39775726	39775622	39775623	Frame_Shift_Ins	-	T	p.*67fs
LIHC	TCGA-BC-A112-01	UBXN2B	ENST00000399598.2,ENST00000520732.1	chr8	59345718:59345802:59346953:59347063:59352191:59352329,	59346954	59347063	59346960	59346961	Frame_Shift_Ins	-	T	p.F144fs
LIHC	TCGA-BC-A112-01	RAB2A	ENST00000466595.1,ENST00000530071.1,ENST00000531289.1,ENST00000262646.7,ENST00000452437.1	chr8	61497281:61497374:61504416:61504528:61531138:61531207,	61504417	61504528	61504461	61504462	Frame_Shift_Ins	-	T	p.V136fs
LIHC	TCGA-BC-A112-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70650274:70650439:70667658:70667876:70673977:70674110,	70667659	70667876	70667774	70667775	Frame_Shift_Ins	-	T	p.K381fs
LIHC	TCGA-BC-A112-01	NCOA2	ENST00000518287.2	chr8	71056876:71057083:71060507:71060718:71068205:71068875,71053418:71053634:71060507:71060718:71068205:71068875,	71060508	71060718	71060656	71060657	Frame_Shift_Ins	-	G	p.P819fs
LIHC	TCGA-BC-A112-01	CRISPLD1	ENST00000520277.1	chr8	75897104:75897155:75898160:75898480:75924667:75924724,	75898161	75898480	75898325	75898326	Frame_Shift_Ins	-	T	p.F35fs
LIHC	TCGA-BC-A112-01	CRISPLD1	ENST00000519798.1	chr8	75897104:75897155:75898160:75898352:75924667:75924724,	75898161	75898352	75898325	75898326	Frame_Shift_Ins	-	T	p.F35fs
LIHC	TCGA-BC-A112-01	CRISPLD1	ENST00000520277.1	chr8	75897104:75897155:75898160:75898480:75924667:75924724,	75898161	75898480	75898331	75898332	Frame_Shift_Ins	-	A	p.K37fs
LIHC	TCGA-BC-A112-01	CRISPLD1	ENST00000519798.1	chr8	75897104:75897155:75898160:75898352:75924667:75924724,	75898161	75898352	75898331	75898332	Frame_Shift_Ins	-	A	p.K37fs
LIHC	TCGA-BC-A112-01	MATN2	ENST00000519585.1,ENST00000521041.1,ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000523490.1,ENST00000522270.1	chr8	98973709:98973758:98991113:98991236:99006707:99006824,	98991114	98991236	98991220	98991221	Frame_Shift_Ins	-	G	p.EK355fs
LIHC	TCGA-BC-A112-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104336933	104336934	Frame_Shift_Ins	-	T	p.I200fs
LIHC	TCGA-BC-A112-01	MRPL13	ENST00000306185.3	chr8	121437545:121437606:121455424:121455548:121457307:121457339,121444269:121444363:121455424:121455548:121457307:121457339,	121455425	121455548	121455541	121455542	Frame_Shift_Ins	-	C	p.H12fs
LIHC	TCGA-BC-A112-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123966089	123966090	Frame_Shift_Ins	-	G	p.R780fs
LIHC	TCGA-BC-A112-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1	chr8	124338132:124338266:124340429:124340819:124346117:124346261,	124340430	124340819	124340440	124340441	Frame_Shift_Ins	-	T	p.R1286fs
LIHC	TCGA-BC-A112-01	ASAP1	ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1,ENST00000520189.1	chr8	131092147:131092217:131104218:131104389:131124339:131124568,	131104219	131104389	131104301	131104302	Frame_Shift_Ins	-	G	p.P830fs
LIHC	TCGA-BC-A112-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899217	133899218	Frame_Shift_Ins	-	C	p.P534fs
LIHC	TCGA-BC-A112-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065553	145065554	Frame_Shift_Ins	-	C	p.R55fs
LIHC	TCGA-BC-A112-01	MAF1	ENST00000532522.1,ENST00000322428.5,ENST00000534585.1	chr8	145161503:145161577:145161737:145161866:145161990:145162120,	145161738	145161866	145161822	145161823	Frame_Shift_Ins	-	A	p.RG265fs
LIHC	TCGA-BC-A112-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968161	5968162	Frame_Shift_Ins	-	T	p.K690fs
LIHC	TCGA-BC-A112-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968179	5968180	Frame_Shift_Ins	-	T	p.K684fs
LIHC	TCGA-BC-A112-01	IL33	ENST00000381434.3	chr9	6251139:6251265:6252865:6252991:6253551:6253602,	6252866	6252991	6252972	6252973	Frame_Shift_Ins	-	A	p.LK150fs
LIHC	TCGA-BC-A112-01	IL33	ENST00000381434.3	chr9	6251139:6251265:6252865:6252991:6253551:6253602,	6252866	6252991	6252982	6252983	Frame_Shift_Ins	-	A	p.K154fs
LIHC	TCGA-BC-A112-01	DDX58	ENST00000379882.1,ENST00000545044.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32472972:32473063:32476980:32477129:32480216:32480352,	32476981	32477129	32477125	32477126	Frame_Shift_Ins	-	T	p.T548fs
LIHC	TCGA-BC-A112-01	FAM214B	ENST00000605244.1,ENST00000488109.2,ENST00000378561.1,ENST00000603301.1,ENST00000378554.2,ENST00000378566.1,ENST00000322813.5,ENST00000378557.1	chr9	35105837:35105854:35105937:35106006:35106248:35106407,	35105938	35106006	35105971	35105972	Frame_Shift_Ins	-	C	p.V418fs
LIHC	TCGA-BC-A112-01	TLN1	ENST00000314888.9,ENST00000540444.1	chr9	35715055:35715184:35716386:35716553:35717142:35717437,	35716387	35716553	35716472	35716473	Frame_Shift_Ins	-	C	p.K847fs
LIHC	TCGA-BC-A112-01	CNTNAP3	ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39109156:39109284:39118099:39118256:39132928:39133129,	39118100	39118256	39118152	39118153	Frame_Shift_Ins	-	C	p.L729fs
LIHC	TCGA-BC-A112-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149854	39149855	Frame_Shift_Ins	-	C	p.A533fs
LIHC	TCGA-BC-A112-01	CNTNAP3B	ENST00000276974.6,ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43800863:43801011:43815784:43815988:43816636:43816821,	43815785	43815988	43815876	43815877	Frame_Shift_Ins	-	A	p.I211fs
LIHC	TCGA-BC-A112-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43844143:43844315:43849744:43849851:43853496:43853616,	43849745	43849851	43849769	43849770	Frame_Shift_Ins	-	G	p.QG558fs
LIHC	TCGA-BC-A112-01	MAMDC2	ENST00000377182.4	chr9	72785394:72785547:72833252:72833512:72840665:72840750,	72833253	72833512	72833374	72833375	Frame_Shift_Ins	-	G	p.GG591fs
LIHC	TCGA-BC-A112-01	RFK	ENST00000490113.1	chr9	79003469:79003572:79007333:79007485:79009005:79009048,	79007334	79007485	79007361	79007362	Frame_Shift_Ins	-	G	p.L69fs
LIHC	TCGA-BC-A112-01	RASEF	ENST00000376447.3	chr9	85615083:85615231:85615347:85615485:85615810:85616045,	85615348	85615485	85615415	85615416	Frame_Shift_Ins	-	G	p.R503fs
LIHC	TCGA-BC-A112-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000432218.1,ENST00000337006.4,ENST00000376083.3	chr9	88236116:88236200:88247576:88248289:88257741:88257858,	88247577	88248289	88247814	88247815	Frame_Shift_Ins	-	A	p.L593fs
LIHC	TCGA-BC-A112-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2	chr9	96214665:96214671:96233422:96233669:96238537:96238620,	96233423	96233669	96233546	96233547	Frame_Shift_Ins	-	C	p.P200fs
LIHC	TCGA-BC-A112-01	NANS	ENST00000210444.5	chr9	100823063:100823279:100839199:100839299:100840474:100840586,	100839200	100839299	100839292	100839293	Frame_Shift_Ins	-	A	p.AK147fs
LIHC	TCGA-BC-A112-01	ABCA1	ENST00000374736.3	chr9	107602559:107602800:107607757:107607850:107620802:107620979,	107607758	107607850	107607839	107607840	Frame_Shift_Ins	-	T	p.I244fs
LIHC	TCGA-BC-A112-01	GAPVD1	ENST00000467750.1,ENST00000497580.1,ENST00000265956.4,ENST00000495955.1,ENST00000394084.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128061200:128061385:128064261:128065105:128067341:128067428,	128064262	128065105	128064626	128064627	Frame_Shift_Ins	-	T	p.F184fs
LIHC	TCGA-BC-A112-01	GAPVD1	ENST00000312123.9,ENST00000474637.1,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128109097:128109220:128111668:128111798:128112573:128112683,	128111669	128111798	128111767	128111768	Frame_Shift_Ins	-	C	p.P1063fs
LIHC	TCGA-BC-A112-01	ST6GALNAC4	ENST00000335791.5	chr9	130674665:130674959:130676934:130677120:130679104:130679275,130674710:130674959:130676934:130677120:130678686:130678773,	130676935	130677120	130676972	130676973	Frame_Shift_Ins	-	G	p.A54fs
LIHC	TCGA-BC-A112-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000451855.1,ENST00000372249.1,ENST00000357304.4	chr9	134353860:134354006:134354638:134354780:134357112:134357195,	134354639	134354780	134354688	134354689	Frame_Shift_Ins	-	A	p.E1603fs
LIHC	TCGA-BC-A112-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203707	135203708	Frame_Shift_Ins	-	A	p.A1093fs
LIHC	TCGA-BC-A112-01	FAM208B	ENST00000328090.5	chr10	5765639:5765740:5766392:5766496:5768847:5768920,	5766393	5766496	5766481	5766482	Frame_Shift_Ins	-	A	p.IK112fs
LIHC	TCGA-BC-A112-01	PTER	ENST00000423462.2	chr10	16479361:16479489:16526335:16526815:16528350:16528616,16478982:16479046:16526335:16526815:16528350:16528616,	16526336	16526815	16526545	16526546	Frame_Shift_Ins	-	A	p.IK54fs
LIHC	TCGA-BC-A112-01	ST8SIA6	ENST00000377602.4	chr10	17363188:17363345:17365063:17365156:17369012:17369108,	17365064	17365156	17365141	17365142	Frame_Shift_Ins	-	G	p.H217fs
LIHC	TCGA-BC-A112-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24908804	24908805	Frame_Shift_Ins	-	G	p.S674fs
LIHC	TCGA-BC-A112-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324037	27324038	Frame_Shift_Ins	-	T	p.I1114fs
LIHC	TCGA-BC-A112-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4,ENST00000538146.1	chr10	29775013:29775159:29775338:29775486:29776091:29776228,	29775339	29775486	29775466	29775467	Frame_Shift_Ins	-	A	p.Y1502fs
LIHC	TCGA-BC-A112-01	CSGALNACT2	ENST00000374464.1	chr10	43633933:43634015:43650344:43651258:43654162:43654379,	43650345	43651258	43650835	43650836	Frame_Shift_Ins	-	C	p.P80fs
LIHC	TCGA-BC-A112-01	CSGALNACT2	ENST00000374464.1	chr10	43633933:43634015:43650344:43651258:43654162:43654379,	43650345	43651258	43650889	43650890	Frame_Shift_Ins	-	A	p.K98fs
LIHC	TCGA-BC-A112-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829705	61829706	Frame_Shift_Ins	-	C	p.P3645fs
LIHC	TCGA-BC-A112-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829973	61829974	Frame_Shift_Ins	-	A	p.LQ3555fs
LIHC	TCGA-BC-A112-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61833102	61833103	Frame_Shift_Ins	-	T	p.N2513fs
LIHC	TCGA-BC-A112-01	SIRT1	ENST00000432464.1,ENST00000212015.6,ENST00000406900.1,ENST00000403579.1	chr10	69669012:69669199:69672230:69672788:69676021:69678143,	69672231	69672788	69672559	69672560	Frame_Shift_Ins	-	A	p.*563fs
LIHC	TCGA-BC-A112-01	DNA2	ENST00000358410.3	chr10	70182453:70182647:70190192:70190412:70191613:70191728,	70190193	70190412	70190320	70190321	Frame_Shift_Ins	-	T	p.R780fs
LIHC	TCGA-BC-A112-01	CCAR1	ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6	chr10	70525644:70525836:70530962:70531202:70532744:70532856,	70530963	70531202	70531082	70531083	Frame_Shift_Ins	-	A	p.RK806fs
LIHC	TCGA-BC-A112-01	CCAR1	ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6	chr10	70525644:70525836:70530962:70531202:70532744:70532856,	70530963	70531202	70531096	70531097	Frame_Shift_Ins	-	A	p.K811fs
LIHC	TCGA-BC-A112-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645418	70645419	Frame_Shift_Ins	-	A	p.RK622fs
LIHC	TCGA-BC-A112-01	HK1	ENST00000360289.2,ENST00000404387.2,ENST00000448642.2,ENST00000298649.3,ENST00000359426.6	chr10	71152034:71152064:71154705:71154861:71158350:71158584,	71154706	71154861	71154747	71154748	Frame_Shift_Ins	-	C	p.A789fs
LIHC	TCGA-BC-A112-01	USP54	ENST00000466048.2,ENST00000339859.4,ENST00000408019.1,ENST00000428547.1	chr10	75260412:75260596:75264607:75264748:75265080:75265184,75260412:75260596:75264607:75264748:75265065:75265184,	75264608	75264748	75264711	75264712	Frame_Shift_Ins	-	C	p.G1403fs
LIHC	TCGA-BC-A112-01	SEC24C	ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75506624:75506762:75519379:75519552:75519775:75520144,75510865:75511001:75519379:75519552:75519775:75519823,	75519380	75519552	75519395	75519396	Frame_Shift_Ins	-	C	p.I109fs
LIHC	TCGA-BC-A112-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673406	75673407	Frame_Shift_Ins	-	C	p.L174fs
LIHC	TCGA-BC-A112-01	KAT6B	ENST00000287239.4	chr10	76732264:76732397:76735156:76736088:76737073:76737195,	76735157	76736088	76735587	76735588	Frame_Shift_Ins	-	C	p.P498fs
LIHC	TCGA-BC-A112-01	EXOC6	ENST00000443748.2,ENST00000260762.6,ENST00000371552.4,ENST00000371547.4	chr10	94659355:94659401:94669183:94669388:94675514:94675670,	94669184	94669388	94669378	94669379	Frame_Shift_Ins	-	A	p.D213fs
LIHC	TCGA-BC-A112-01	PDLIM1	ENST00000477757.1,ENST00000329399.6	chr10	97006971:97007123:97023620:97023820:97028534:97028619,	97023621	97023820	97023761	97023762	Frame_Shift_Ins	-	G	p.R131fs
LIHC	TCGA-BC-A112-01	PGAM1	ENST00000334828.5,ENST00000467867.1	chr10	99190135:99190410:99190711:99190892:99192111:99192447,	99190712	99190892	99190813	99190814	Frame_Shift_Ins	-	C	p.VP172fs
LIHC	TCGA-BC-A112-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968555	99968556	Frame_Shift_Ins	-	A	p.T229fs
LIHC	TCGA-BC-A112-01	DPCD	ENST00000370147.1,ENST00000370148.2	chr10	103360959:103361093:103364896:103364969:103368623:103368659,	103364897	103364969	103364958	103364959	Frame_Shift_Ins	-	C	p.P156fs
LIHC	TCGA-BC-A112-01	PPRC1	ENST00000413464.2,ENST00000489648.1	chr10	103904006:103904064:103908128:103908278:103908384:103908451,	103908129	103908278	103908247	103908248	Frame_Shift_Ins	-	C	p.P1507fs
LIHC	TCGA-BC-A112-01	CACUL1	ENST00000369151.3,ENST00000544392.1,ENST00000493518.1,ENST00000489169.1	chr10	120445508:120445680:120446109:120446153:120450776:120450915,	120446110	120446153	120446124	120446125	Frame_Shift_Ins	-	C	p.*352fs
LIHC	TCGA-BC-A112-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742320	124742321	Frame_Shift_Ins	-	G	p.V97fs
LIHC	TCGA-BC-A112-01	ZRANB1	ENST00000359653.4	chr10	126655162:126655350:126660533:126660687:126662213:126662285,	126660534	126660687	126660637	126660638	Frame_Shift_Ins	-	T	p.V369fs
LIHC	TCGA-BC-A112-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134219402	134219403	Frame_Shift_Ins	-	C	p.PP466fs
LIHC	TCGA-BC-A112-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266573	1266574	Frame_Shift_Ins	-	C	p.SP2824fs
LIHC	TCGA-BC-A112-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266959	1266960	Frame_Shift_Ins	-	G	p.G2953fs
LIHC	TCGA-BC-A112-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267176	1267177	Frame_Shift_Ins	-	A	p.S3026fs
LIHC	TCGA-BC-A112-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267579	1267580	Frame_Shift_Ins	-	C	p.P3160fs
LIHC	TCGA-BC-A112-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1270596	1270597	Frame_Shift_Ins	-	G	p.GG4165fs
LIHC	TCGA-BC-A112-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1272194	1272195	Frame_Shift_Ins	-	C	p.T4698fs
LIHC	TCGA-BC-A112-01	RRM1	ENST00000423050.2,ENST00000537197.1,ENST00000533349.1,ENST00000531591.1,ENST00000529109.1,ENST00000534285.1,ENST00000532170.1,ENST00000533495.1,ENST00000300738.5	chr11	4143370:4143450:4144412:4144614:4147913:4148047,	4144413	4144614	4144553	4144554	Frame_Shift_Ins	-	G	p.R420fs
LIHC	TCGA-BC-A112-01	SMPD1	ENST00000531303.1	chr11	6413422:6413426:6414445:6414617:6414846:6414923,6412616:6413386:6414445:6414617:6414846:6414923,6412613:6412733:6414445:6414617:6414846:6414923,	6414446	6414617	6414580	6414581	Frame_Shift_Ins	-	G	p.G409fs
LIHC	TCGA-BC-A112-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6423311:6423439:6423805:6423955:6424374:6424438,	6423806	6423955	6423899	6423900	Frame_Shift_Ins	-	G	p.R387fs
LIHC	TCGA-BC-A112-01	RRP8	ENST00000533907.1	chr11	6622483:6622832:6623081:6623445:6624633:6624809,	6623082	6623445	6623373	6623374	Frame_Shift_Ins	-	G	p.P58fs
LIHC	TCGA-BC-A112-01	RRP8	ENST00000530762.1	chr11	6622483:6622832:6623081:6623494:6624633:6624809,	6623082	6623494	6623373	6623374	Frame_Shift_Ins	-	G	p.P58fs
LIHC	TCGA-BC-A112-01	EIF3F	ENST00000449102.2,ENST00000531329.1	chr11	8008902:8009263:8013630:8013710:8014433:8014540,	8013631	8013710	8013675	8013676	Frame_Shift_Ins	-	A	p.QK160fs
LIHC	TCGA-BC-A112-01	IPO7	ENST00000379719.3	chr11	9431615:9431633:9435801:9435958:9438605:9438695,	9435802	9435958	9435805	9435806	Frame_Shift_Ins	-	A	p.*K161fs
LIHC	TCGA-BC-A112-01	MICAL2	ENST00000527546.1,ENST00000537344.1,ENST00000379612.3	chr11	12257723:12257792:12260982:12261132:12278331:12278456,12257723:12257792:12260982:12261132:12270730:12270793,	12260983	12261132	12261015	12261016	Frame_Shift_Ins	-	A	p.S700fs
LIHC	TCGA-BC-A112-01	SAAL1	ENST00000529318.1,ENST00000524803.1,ENST00000300013.4,ENST00000533851.1,ENST00000531581.1	chr11	18111980:18112040:18113791:18113871:18118317:18118401,	18113792	18113871	18113797	18113798	Frame_Shift_Ins	-	T	p.T136fs
LIHC	TCGA-BC-A112-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000531848.1,ENST00000396253.3	chr11	18330492:18330626:18332287:18332480:18332933:18332998,	18332288	18332480	18332347	18332348	Frame_Shift_Ins	-	A	p.R26fs
LIHC	TCGA-BC-A112-01	ELP4	ENST00000379163.5	chr11	31671662:31671769:31784958:31785097:31804940:31805319,	31784959	31785097	31785072	31785073	Frame_Shift_Ins	-	T	p.F516fs
LIHC	TCGA-BC-A112-01	EIF3M	ENST00000531921.1	chr11	32608591:32608690:32610139:32610278:32611092:32611149,	32610140	32610278	32610226	32610227	Frame_Shift_Ins	-	A	p.K88fs
LIHC	TCGA-BC-A112-01	EIF3M	ENST00000531921.1	chr11	32608591:32608690:32610139:32610278:32611092:32611149,	32610140	32610278	32610240	32610241	Frame_Shift_Ins	-	T	p.S93fs
LIHC	TCGA-BC-A112-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635180	32635181	Frame_Shift_Ins	-	T	p.*895fs
LIHC	TCGA-BC-A112-01	CD44	ENST00000434472.2	chr11	35223167:35223334:35232792:35232996:35236398:35236408,35211381:35211519:35232792:35232996:35236398:35236408,35231516:35231601:35232792:35232996:35236398:35236408,35229651:35229756:35232792:35232996:35236398:35236461,35211561:35211612:35232792:35232996:35236398:35236408,	35232793	35232996	35232823	35232824	Frame_Shift_Ins	-	C	p.A546fs
LIHC	TCGA-BC-A112-01	CKAP5	ENST00000533413.1,ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46784176:46784312:46784525:46784729:46785030:46785180,	46784526	46784729	46784711	46784712	Frame_Shift_Ins	-	T	p.R1236fs
LIHC	TCGA-BC-A112-01	CD6	ENST00000538611.1,ENST00000344931.5,ENST00000452451.2,ENST00000313421.7,ENST00000545105.1	chr11	60778541:60778607:60780894:60781035:60781390:60781427,	60780895	60781035	60781022	60781023	Frame_Shift_Ins	-	A	p.R427fs
LIHC	TCGA-BC-A112-01	TAF6L	ENST00000524976.1,ENST00000294168.3	chr11	62546393:62546435:62549365:62549440:62549584:62549805,	62549366	62549440	62549419	62549420	Frame_Shift_Ins	-	T	p.C196fs
LIHC	TCGA-BC-A112-01	SLC22A8	ENST00000535878.1,ENST00000545207.1,ENST00000336232.2,ENST00000430500.2	chr11	62760708:62760808:62760895:62761099:62761241:62761350,	62760896	62761099	62761042	62761043	Frame_Shift_Ins	-	G	p.P461fs
LIHC	TCGA-BC-A112-01	KDM2A	ENST00000531696.1,ENST00000529006.2,ENST00000398645.2,ENST00000526258.1	chr11	66985226:66985355:66986758:66986874:66995507:66995634,	66986759	66986874	66986843	66986844	Frame_Shift_Ins	-	A	p.*309fs
LIHC	TCGA-BC-A112-01	SSH3	ENST00000532881.1,ENST00000529224.1,ENST00000376757.5,ENST00000308127.4,ENST00000532181.1,ENST00000527821.1	chr11	67075316:67075410:67075644:67075773:67075882:67075929,	67075645	67075773	67075757	67075758	Frame_Shift_Ins	-	C	p.S333fs
LIHC	TCGA-BC-A112-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166410:67166634:67167031:67167136:67168159:67168228,	67167032	67167136	67167051	67167052	Frame_Shift_Ins	-	T	p.N168fs
LIHC	TCGA-BC-A112-01	NDUFV1	ENST00000525086.1	chr11	67374431:67374547:67375866:67375949:67376022:67376077,	67375867	67375949	67375878	67375879	Frame_Shift_Ins	-	A	p.N29fs
LIHC	TCGA-BC-A112-01	NDUFV1	ENST00000524838.1,ENST00000532244.1	chr11	67374431:67374547:67375870:67375949:67376022:67376077,	67375871	67375949	67375878	67375879	Frame_Shift_Ins	-	A	p.N29fs
LIHC	TCGA-BC-A112-01	NDUFV1	ENST00000533075.1	chr11	67374431:67374547:67375866:67375928:67376022:67376077,	67375867	67375928	67375878	67375879	Frame_Shift_Ins	-	A	p.N29fs
LIHC	TCGA-BC-A112-01	FAM168A	ENST00000356467.4,ENST00000064778.4	chr11	73120531:73120706:73122438:73122581:73130918:73131044,	73122439	73122581	73122458	73122459	Frame_Shift_Ins	-	G	p.A143fs
LIHC	TCGA-BC-A112-01	C2CD3	ENST00000313663.7,ENST00000442398.2,ENST00000334126.7,ENST00000414160.2	chr11	73785297:73785645:73789159:73789762:73795925:73796015,	73789160	73789762	73789486	73789487	Frame_Shift_Ins	-	G	p.Q1426fs
LIHC	TCGA-BC-A112-01	USP35	ENST00000529308.1,ENST00000528910.1	chr11	77908986:77909114:77910640:77910770:77911178:77911280,	77910641	77910770	77910758	77910759	Frame_Shift_Ins	-	A	p.N309fs
LIHC	TCGA-BC-A112-01	TMEM126B	ENST00000531274.1	chr11	85342730:85342852:85345129:85345220:85346710:85346804,85339673:85339732:85345129:85345220:85346710:85346804,	85345130	85345220	85345134	85345135	Frame_Shift_Ins	-	A	p.K70fs
LIHC	TCGA-BC-A112-01	TMEM126B	ENST00000526822.1	chr11	85342730:85342852:85345129:85345323:85346710:85346804,85339673:85339732:85345129:85345323:85346710:85346804,	85345130	85345323	85345134	85345135	Frame_Shift_Ins	-	A	p.K70fs
LIHC	TCGA-BC-A112-01	CNTN5	ENST00000528682.1,ENST00000524871.1,ENST00000418526.2,ENST00000527185.1,ENST00000279463.3	chr11	100064219:100064395:100095423:100095544:100126491:100126650,	100095424	100095544	100095541	100095542	Frame_Shift_Ins	-	G	p.G668fs
LIHC	TCGA-BC-A112-01	BIRC3	ENST00000263464.3	chr11	102188293:102188302:102192567:102196093:102196196:102196296,	102192568	102196093	102195490	102195491	Frame_Shift_Ins	-	A	p.K84fs
LIHC	TCGA-BC-A112-01	BIRC3	ENST00000263464.3	chr11	102188293:102188302:102192567:102196093:102196196:102196296,	102192568	102196093	102195575	102195576	Frame_Shift_Ins	-	T	p.I112fs
LIHC	TCGA-BC-A112-01	CASP4	ENST00000529183.1	chr11	104820387:104820504:104825473:104825728:104839245:104839274,	104825474	104825728	104825483	104825484	Frame_Shift_Ins	-	G	p.*85fs
LIHC	TCGA-BC-A112-01	NPAT	ENST00000530859.1,ENST00000278612.8	chr11	108029519:108029746:108031606:108032741:108032846:108032892,	108031607	108032741	108031649	108031650	Frame_Shift_Ins	-	T	p.T1388fs
LIHC	TCGA-BC-A112-01	NXPE1	ENST00000536312.1	chr11	114399517:114399554:114400896:114401630:114421824:114421923,	114400897	114401630	114401320	114401321	Frame_Shift_Ins	-	C	p.F137fs
LIHC	TCGA-BC-A112-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770883	118770884	Frame_Shift_Ins	-	G	p.E1050fs
LIHC	TCGA-BC-A112-01	ST3GAL4	ENST00000531217.1	chr11	126277468:126277529:126277993:126278089:126278201:126278391,126277146:126277244:126277993:126278089:126278201:126278391,	126277994	126278089	126278020	126278021	Frame_Shift_Ins	-	G	p.G123fs
LIHC	TCGA-BC-A112-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842442	128842443	Frame_Shift_Ins	-	G	p.S1306fs
LIHC	TCGA-BC-A112-01	WNK1	ENST00000315939.6,ENST00000537687.1,ENST00000340908.4,ENST00000530271.2,ENST00000540360.1,ENST00000535572.1	chr12	966326:966415:968410:968630:970178:970301,	968411	968630	968496	968497	Frame_Shift_Ins	-	A	p.K496fs
LIHC	TCGA-BC-A112-01	VWF	ENST00000261405.5	chr12	6061556:6061685:6062661:6062760:6076651:6076768,	6062662	6062760	6062758	6062759	Frame_Shift_Ins	-	C	p.V2630fs
LIHC	TCGA-BC-A112-01	LRRC23	ENST00000451681.1,ENST00000428946.1,ENST00000486401.1	chr12	6992867:6993083:7014748:7014923:7015572:7015619,7014037:7014067:7014748:7014923:7015572:7015619,	7014749	7014923	7014901	7014902	Frame_Shift_Ins	-	G	p.G35fs
LIHC	TCGA-BC-A112-01	ENO2	ENST00000541477.1,ENST00000544774.1,ENST00000229277.1,ENST00000538763.1,ENST00000535366.1	chr12	7026744:7026878:7027103:7027326:7028729:7028927,	7027104	7027326	7027279	7027280	Frame_Shift_Ins	-	G	p.G207fs
LIHC	TCGA-BC-A112-01	A2ML1	ENST00000299698.7,ENST00000539547.1,ENST00000541459.1	chr12	9001315:9001510:9002264:9002355:9002755:9002870,	9002265	9002355	9002276	9002277	Frame_Shift_Ins	-	A	p.N681fs
LIHC	TCGA-BC-A112-01	KLRD1	ENST00000381908.3	chr12	10462224:10462287:10464062:10464214:10466005:10466112,	10464063	10464214	10464194	10464195	Frame_Shift_Ins	-	T	p.S99fs
LIHC	TCGA-BC-A112-01	LRP6	ENST00000543091.1	chr12	12356136:12356334:12397195:12397589:12419614:12419703,	12397196	12397589	12397280	12397281	Frame_Shift_Ins	-	A	p.*122fs
LIHC	TCGA-BC-A112-01	C2CD5	ENST00000544930.1,ENST00000396028.2,ENST00000536386.1,ENST00000545552.1,ENST00000333957.4,ENST00000542676.1,ENST00000446597.1,ENST00000539615.1	chr12	22602748:22602825:22606829:22606976:22609904:22610095,	22606830	22606976	22606943	22606944	Frame_Shift_Ins	-	A	p.C920fs
LIHC	TCGA-BC-A112-01	ETNK1	ENST00000538218.1	chr12	22778290:22778520:22796696:22796956:22811947:22812088,	22796697	22796956	22796941	22796942	Frame_Shift_Ins	-	C	p.T223fs
LIHC	TCGA-BC-A112-01	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24989444:24989530:24995015:24995158:25002719:25002883,	24995016	24995158	24995036	24995037	Frame_Shift_Ins	-	A	p.L266fs
LIHC	TCGA-BC-A112-01	STK38L	ENST00000545470.1,ENST00000539863.1,ENST00000389032.3,ENST00000544367.1	chr12	27397240:27397265:27450642:27450787:27455069:27455121,	27450643	27450787	27450742	27450743	Frame_Shift_Ins	-	T	p.I30fs
LIHC	TCGA-BC-A112-01	CAPRIN2	ENST00000540584.1	chr12	30904004:30904067:30906277:30906493:30907614:30907787,30904004:30904067:30906277:30906493:30907684:30907822,30904004:30904067:30906277:30906493:30907622:30907794,	30906278	30906493	30906281	30906282	Frame_Shift_Ins	-	T	p.K139fs
LIHC	TCGA-BC-A112-01	CAPRIN2	ENST00000540584.1	chr12	30904004:30904067:30906277:30906493:30907614:30907787,30904004:30904067:30906277:30906493:30907684:30907822,30904004:30904067:30906277:30906493:30907622:30907794,	30906278	30906493	30906300	30906301	Frame_Shift_Ins	-	T	p.*133fs
LIHC	TCGA-BC-A112-01	CAPRIN2	ENST00000540584.1	chr12	30904004:30904067:30906277:30906493:30907614:30907787,30904004:30904067:30906277:30906493:30907684:30907822,30904004:30904067:30906277:30906493:30907622:30907794,	30906278	30906493	30906387	30906388	Frame_Shift_Ins	-	G	p.A104fs
LIHC	TCGA-BC-A112-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40706515:40706710:40707773:40707975:40709013:40709102,40704232:40704451:40707773:40707975:40709013:40709102,	40707774	40707975	40707828	40707829	Frame_Shift_Ins	-	A	p.K1531fs
LIHC	TCGA-BC-A112-01	PUS7L	ENST00000551923.1,ENST00000550784.1,ENST00000416848.2,ENST00000344862.5,ENST00000553166.1	chr12	44140016:44140041:44142252:44142412:44148138:44148245,	44142253	44142412	44142390	44142391	Frame_Shift_Ins	-	T	p.T311fs
LIHC	TCGA-BC-A112-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148838	44148839	Frame_Shift_Ins	-	T	p.NK70fs
LIHC	TCGA-BC-A112-01	RPAP3	ENST00000005386.3,ENST00000432584.3	chr12	48063889:48064128:48073275:48073377:48073486:48073557,	48073276	48073377	48073370	48073371	Frame_Shift_Ins	-	T	p.*398fs
LIHC	TCGA-BC-A112-01	TROAP	ENST00000547923.1,ENST00000257909.3	chr12	49724443:49724726:49724996:49725190:49725355:49725453,	49724997	49725190	49725103	49725104	Frame_Shift_Ins	-	T	p.L826fs
LIHC	TCGA-BC-A112-01	TROAP	ENST00000547923.1,ENST00000257909.3	chr12	49724443:49724726:49724996:49725190:49725355:49725453,	49724997	49725190	49725176	49725177	Frame_Shift_Ins	-	G	p.A850fs
LIHC	TCGA-BC-A112-01	NCKAP5L	ENST00000335999.6	chr12	50188547:50191177:50192132:50192246:50195630:50195750,	50192133	50192246	50192194	50192195	Frame_Shift_Ins	-	G	p.E135fs
LIHC	TCGA-BC-A112-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685611	51685612	Frame_Shift_Ins	-	G	p.A427fs
LIHC	TCGA-BC-A112-01	SLC4A8	ENST00000358657.3,ENST00000535225.2,ENST00000604314.1,ENST00000453097.2,ENST00000551071.1,ENST00000394856.1,ENST00000514353.3,ENST00000319957.6	chr12	51864175:51864309:51865070:51865316:51868125:51868231,	51865071	51865316	51865243	51865244	Frame_Shift_Ins	-	A	p.K611fs
LIHC	TCGA-BC-A112-01	LRP1	ENST00000243077.3,ENST00000556356.1	chr12	57603811:57603952:57604089:57604263:57604500:57604662,	57604090	57604263	57604254	57604255	Frame_Shift_Ins	-	C	p.P4249fs
LIHC	TCGA-BC-A112-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920659	57920660	Frame_Shift_Ins	-	C	p.LP577fs
LIHC	TCGA-BC-A112-01	DPY19L2	ENST00000306389.7	chr12	64015017:64015117:64020248:64020306:64038182:64038276,	64020249	64020306	64020295	64020296	Frame_Shift_Ins	-	G	p.G272fs
LIHC	TCGA-BC-A112-01	C12orf56	ENST00000542397.1	chr12	64668680:64668755:64669077:64669152:64678443:64678533,	64669078	64669152	64669083	64669084	Frame_Shift_Ins	-	A	p.LA501fs
LIHC	TCGA-BC-A112-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3,ENST00000546771.1	chr12	72008985:72009096:72013094:72013189:72013705:72013745,	72013095	72013189	72013160	72013161	Frame_Shift_Ins	-	A	p.S1693fs
LIHC	TCGA-BC-A112-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72013094:72013189:72013705:72013904:72013989:72014095,	72013706	72013904	72013757	72013758	Frame_Shift_Ins	-	T	p.T1666fs
LIHC	TCGA-BC-A112-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449394	85449395	Frame_Shift_Ins	-	A	p.K275fs
LIHC	TCGA-BC-A112-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449715	85449716	Frame_Shift_Ins	-	A	p.K382fs
LIHC	TCGA-BC-A112-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450194	85450195	Frame_Shift_Ins	-	A	p.T542fs
LIHC	TCGA-BC-A112-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450434	85450435	Frame_Shift_Ins	-	A	p.R622fs
LIHC	TCGA-BC-A112-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88484504:88484616:88486457:88486609:88487546:88487752,	88486458	88486609	88486603	88486604	Frame_Shift_Ins	-	G	p.N1106fs
LIHC	TCGA-BC-A112-01	ATP2B1	ENST00000359142.3,ENST00000261173.2,ENST00000428670.3,ENST00000348959.3	chr12	90021454:90021493:90024281:90024422:90028554:90028680,	90024282	90024422	90024292	90024293	Frame_Shift_Ins	-	T	p.R306fs
LIHC	TCGA-BC-A112-01	PLEKHG7	ENST00000344636.3	chr12	93157816:93157970:93162758:93162856:93163863:93166231,	93162759	93162856	93162853	93162854	Frame_Shift_Ins	-	A	p.IK343fs
LIHC	TCGA-BC-A112-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93202792:93202932:93205054:93205210:93206755:93206869,	93205055	93205210	93205176	93205177	Frame_Shift_Ins	-	C	p.H693fs
LIHC	TCGA-BC-A112-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603819	95603820	Frame_Shift_Ins	-	T	p.G414fs
LIHC	TCGA-BC-A112-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95605017	95605018	Frame_Shift_Ins	-	G	p.A15fs
LIHC	TCGA-BC-A112-01	UTP20	ENST00000261637.4	chr12	101761637:101761754:101763498:101763669:101764209:101764341,	101763499	101763669	101763581	101763582	Frame_Shift_Ins	-	A	p.K2156fs
LIHC	TCGA-BC-A112-01	UTP20	ENST00000261637.4	chr12	101769401:101769534:101773148:101773336:101774917:101774989,	101773149	101773336	101773331	101773332	Frame_Shift_Ins	-	A	p.K2527fs
LIHC	TCGA-BC-A112-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109623383:109623545:109625803:109625967:109629417:109629568,	109625804	109625967	109625939	109625940	Frame_Shift_Ins	-	G	p.G706fs
LIHC	TCGA-BC-A112-01	FAM216A	ENST00000546396.1,ENST00000377673.5	chr12	110924338:110924522:110925665:110925748:110927823:110928154,	110925666	110925748	110925687	110925688	Frame_Shift_Ins	-	A	p.N215fs
LIHC	TCGA-BC-A112-01	RAD9B	ENST00000392672.4,ENST00000409778.3,ENST00000409461.1,ENST00000409300.1	chr12	110940132:110940188:110941610:110941681:110943421:110943577,	110941611	110941681	110941672	110941673	Frame_Shift_Ins	-	A	p.SK36fs
LIHC	TCGA-BC-A112-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2	chr12	112686123:112686316:112687947:112688181:112688774:112688938,	112687948	112688181	112688096	112688097	Frame_Shift_Ins	-	T	p.Q1122fs
LIHC	TCGA-BC-A112-01	C12orf49	ENST00000536380.1,ENST00000547630.1	chr12	117157567:117157681:117158100:117158252:117160871:117161028,117157567:117157681:117158100:117158252:117175594:117175641,	117158101	117158252	117158231	117158232	Frame_Shift_Ins	-	C	p.F97fs
LIHC	TCGA-BC-A112-01	CIT	ENST00000392521.2,ENST00000261833.7	chr12	120222828:120222869:120241009:120241193:120260623:120260777,	120241010	120241193	120241182	120241183	Frame_Shift_Ins	-	G	p.R375fs
LIHC	TCGA-BC-A112-01	OASL	ENST00000339275.5	chr12	121458359:121458861:121461792:121461940:121465378:121465620,121458359:121458861:121461792:121461940:121469244:121469420,	121461793	121461940	121461863	121461864	Frame_Shift_Ins	-	C	p.L326fs
LIHC	TCGA-BC-A112-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000538120.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122757380:122757647:122758584:122758709:122762700:122762750,	122758585	122758709	122758701	122758702	Frame_Shift_Ins	-	A	p.S1314fs
LIHC	TCGA-BC-A112-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123780451:123780597:123782524:123782718:123787370:123787447,	123782525	123782718	123782612	123782613	Frame_Shift_Ins	-	T	p.N*1317fs
LIHC	TCGA-BC-A112-01	SFSWAP	ENST00000535236.1,ENST00000538548.1,ENST00000541286.1,ENST00000261674.4	chr12	132203998:132204084:132209949:132210175:132211484:132211579,	132209950	132210175	132210046	132210047	Frame_Shift_Ins	-	C	p.P235fs
LIHC	TCGA-BC-A112-01	SFSWAP	ENST00000535236.1,ENST00000537164.1,ENST00000538548.1,ENST00000541286.1,ENST00000261674.4	chr12	132237667:132237908:132238912:132239044:132239930:132240024,	132238913	132239044	132238939	132238940	Frame_Shift_Ins	-	C	p.T450fs
LIHC	TCGA-BC-A112-01	ULK1	ENST00000542313.1,ENST00000537421.1,ENST00000321867.4	chr12	132393188:132393362:132393442:132393516:132393680:132393714,	132393443	132393516	132393502	132393503	Frame_Shift_Ins	-	C	p.P184fs
LIHC	TCGA-BC-A112-01	FBRSL1	ENST00000261673.6,ENST00000434748.2	chr12	133146923:133147126:133147892:133148110:133148873:133148924,	133147893	133148110	133148060	133148061	Frame_Shift_Ins	-	C	p.P461fs
LIHC	TCGA-BC-A112-01	CHFR	ENST00000540963.1,ENST00000541817.1,ENST00000450056.2	chr12	133438132:133438220:133446204:133446384:133447309:133447369,	133446205	133446384	133446307	133446308	Frame_Shift_Ins	-	A	p.LG172fs
LIHC	TCGA-BC-A112-01	CHFR	ENST00000432561.2,ENST00000266880.7	chr12	133438132:133438220:133446204:133446420:133447309:133447369,	133446205	133446420	133446307	133446308	Frame_Shift_Ins	-	A	p.LG172fs
LIHC	TCGA-BC-A112-01	ZMYM2	ENST00000382871.2,ENST00000382870.3,ENST00000382874.2,ENST00000382869.3	chr13	20633586:20633702:20635192:20635364:20636985:20637111,	20635193	20635364	20635263	20635264	Frame_Shift_Ins	-	A	p.Q937fs
LIHC	TCGA-BC-A112-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014368	28014369	Frame_Shift_Ins	-	T	p.S73fs
LIHC	TCGA-BC-A112-01	HMGB1	ENST00000326004.4,ENST00000341423.5	chr13	31037347:31037489:31037667:31037831:31039932:31040051,	31037668	31037831	31037693	31037694	Frame_Shift_Ins	-	A	p.*42fs
LIHC	TCGA-BC-A112-01	USPL1	ENST00000255304.4	chr13	31221068:31221194:31227284:31227442:31231610:31233686,	31227285	31227442	31227356	31227357	Frame_Shift_Ins	-	T	p.L437fs
LIHC	TCGA-BC-A112-01	N4BP2L2	ENST00000505213.1,ENST00000267068.3	chr13	33101600:33101669:33109905:33111164:33112754:33112821,	33109906	33111164	33110772	33110773	Frame_Shift_Ins	-	G	p.R131fs
LIHC	TCGA-BC-A112-01	NBEA	ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3	chr13	35691550:35691630:35692364:35692427:35692513:35692611,	35692365	35692427	35692370	35692371	Frame_Shift_Ins	-	G	p.RG696fs
LIHC	TCGA-BC-A112-01	SUPT20H	ENST00000356185.3,ENST00000360252.4,ENST00000542180.1,ENST00000475892.1,ENST00000493537.1,ENST00000495071.2,ENST00000464744.1,ENST00000490716.1,ENST00000350612.6	chr13	37605875:37606032:37607585:37607725:37614541:37614595,	37607586	37607725	37607716	37607717	Frame_Shift_Ins	-	T	p.N193fs
LIHC	TCGA-BC-A112-01	UFM1	ENST00000437952.1,ENST00000379641.1,ENST00000239878.4,ENST00000379649.1	chr13	38928381:38928433:38932229:38932269:38933437:38933470,	38932230	38932269	38932232	38932233	Frame_Shift_Ins	-	A	p.S59fs
LIHC	TCGA-BC-A112-01	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41506169:41508164:41515056:41515506:41517087:41517280,	41515057	41515506	41515250	41515251	Frame_Shift_Ins	-	T	p.NQ354fs
LIHC	TCGA-BC-A112-01	VWA8	ENST00000379310.3	chr13	42266997:42267108:42273206:42273406:42275527:42275666,	42273207	42273406	42273308	42273309	Frame_Shift_Ins	-	A	p.LY1154fs
LIHC	TCGA-BC-A112-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50041999:50042096:50050611:50051175:50054354:50054471,	50050612	50051175	50050883	50050884	Frame_Shift_Ins	-	T	p.F193fs
LIHC	TCGA-BC-A112-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671634	77671635	Frame_Shift_Ins	-	C	p.SQ3218fs
LIHC	TCGA-BC-A112-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671652	77671653	Frame_Shift_Ins	-	T	p.KK3212fs
LIHC	TCGA-BC-A112-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672381	77672382	Frame_Shift_Ins	-	A	p.LH2969fs
LIHC	TCGA-BC-A112-01	FARP1	ENST00000595437.1,ENST00000376586.2,ENST00000319562.6	chr13	99064154:99064288:99076825:99076904:99083296:99083534,	99076826	99076904	99076837	99076838	Frame_Shift_Ins	-	A	p.*613fs
LIHC	TCGA-BC-A112-01	PCCA	ENST00000376285.1,ENST00000376279.3	chr13	100741336:100741479:100755136:100755214:100764094:100764142,	100755137	100755214	100755209	100755210	Frame_Shift_Ins	-	A	p.K60fs
LIHC	TCGA-BC-A112-01	PARP2	ENST00000529465.2	chr14	20811795:20811846:20813090:20813246:20813552:20813623,	20813091	20813246	20813185	20813186	Frame_Shift_Ins	-	A	p.SK47fs
LIHC	TCGA-BC-A112-01	PARP2	ENST00000250416.5,ENST00000527915.1	chr14	20811795:20811846:20813090:20813285:20813552:20813623,	20813091	20813285	20813185	20813186	Frame_Shift_Ins	-	A	p.SK47fs
LIHC	TCGA-BC-A112-01	LRP10	ENST00000551466.1,ENST00000546834.1,ENST00000359591.4	chr14	23344344:23344454:23344563:23345581:23345897:23346027,	23344564	23345581	23344869	23344870	Frame_Shift_Ins	-	C	p.P238fs
LIHC	TCGA-BC-A112-01	ACIN1	ENST00000557515.1,ENST00000338631.6,ENST00000553790.1,ENST00000397341.3,ENST00000554680.1,ENST00000357481.2,ENST00000262710.1,ENST00000555807.1,ENST00000605057.1,ENST00000457657.1	chr14	23532673:23532786:23533313:23533466:23533563:23533628,	23533314	23533466	23533340	23533341	Frame_Shift_Ins	-	C	p.E915fs
LIHC	TCGA-BC-A112-01	ACIN1	ENST00000557039.1,ENST00000555053.1,ENST00000473758.1,ENST00000555566.1,ENST00000555478.1	chr14	23532673:23532786:23533313:23533430:23533563:23533628,	23533314	23533430	23533340	23533341	Frame_Shift_Ins	-	C	p.E915fs
LIHC	TCGA-BC-A112-01	DHRS2	ENST00000432832.2,ENST00000250383.6,ENST00000556729.1,ENST00000344777.7,ENST00000556701.1,ENST00000553896.1	chr14	24108035:24108213:24108387:24108565:24109002:24109104,	24108388	24108565	24108528	24108529	Frame_Shift_Ins	-	G	p.G94fs
LIHC	TCGA-BC-A112-01	ADCY4	ENST00000310677.4,ENST00000545213.1,ENST00000554781.1,ENST00000554577.1,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24787597:24787774:24787859:24787984:24788303:24788418,	24787860	24787984	24787921	24787922	Frame_Shift_Ins	-	A	p.G1007fs
LIHC	TCGA-BC-A112-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32559902	32559903	Frame_Shift_Ins	-	C	p.RP9fs
LIHC	TCGA-BC-A112-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562098	32562099	Frame_Shift_Ins	-	A	p.*742fs
LIHC	TCGA-BC-A112-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562176	32562177	Frame_Shift_Ins	-	C	p.C768fs
LIHC	TCGA-BC-A112-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562345	32562346	Frame_Shift_Ins	-	A	p.K824fs
LIHC	TCGA-BC-A112-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562544	32562545	Frame_Shift_Ins	-	T	p.V890fs
LIHC	TCGA-BC-A112-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563414	32563415	Frame_Shift_Ins	-	T	p.V1180fs
LIHC	TCGA-BC-A112-01	BAZ1A	ENST00000382422.2,ENST00000360310.1	chr14	35255331:35255427:35261980:35262127:35263954:35264093,	35261981	35262127	35262063	35262064	Frame_Shift_Ins	-	A	p.F476fs
LIHC	TCGA-BC-A112-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35272059:35272194:35276656:35276744:35280140:35280242,	35276657	35276744	35276724	35276725	Frame_Shift_Ins	-	A	p.S220fs
LIHC	TCGA-BC-A112-01	SRP54	ENST00000556994.1,ENST00000556380.1,ENST00000216774.6,ENST00000546080.1,ENST00000555557.1	chr14	35477979:35478037:35480714:35480865:35482551:35482640,	35480715	35480865	35480777	35480778	Frame_Shift_Ins	-	T	p.I183fs
LIHC	TCGA-BC-A112-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39517855:39517933:39524346:39524500:39530968:39531075,	39524347	39524500	39524454	39524455	Frame_Shift_Ins	-	A	p.LP315fs
LIHC	TCGA-BC-A112-01	KLHL28	ENST00000355081.2,ENST00000396128.4	chr14	45398015:45398394:45400535:45400744:45403317:45403761,	45400536	45400744	45400641	45400642	Frame_Shift_Ins	-	A	p.G483fs
LIHC	TCGA-BC-A112-01	FKBP3	ENST00000556231.1,ENST00000557324.1,ENST00000396062.3,ENST00000216330.3	chr14	45590790:45590823:45598996:45599104:45599901:45600003,	45598997	45599104	45599004	45599005	Frame_Shift_Ins	-	G	p.G104fs
LIHC	TCGA-BC-A112-01	SOS2	ENST00000216373.5,ENST00000543680.1,ENST00000555794.1	chr14	50625282:50625364:50626148:50626804:50628199:50628327,	50626149	50626804	50626511	50626512	Frame_Shift_Ins	-	T	p.T497fs
LIHC	TCGA-BC-A112-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223418	51223419	Frame_Shift_Ins	-	T	p.F1444fs
LIHC	TCGA-BC-A112-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000324330.9,ENST00000245441.5,ENST00000453401.2,ENST00000382043.4	chr14	51238049:51238186:51239018:51239186:51239666:51239716,	51239019	51239186	51239123	51239124	Frame_Shift_Ins	-	A	p.L292fs
LIHC	TCGA-BC-A112-01	TMEM260	ENST00000539559.2,ENST00000538838.1,ENST00000557657.1,ENST00000556929.1,ENST00000261556.6,ENST00000536419.1,ENST00000557626.1,ENST00000556422.1,ENST00000555497.1	chr14	57072287:57072401:57075823:57076003:57078962:57079003,	57075824	57076003	57075958	57075959	Frame_Shift_Ins	-	T	p.GF257fs
LIHC	TCGA-BC-A112-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442508	61442509	Frame_Shift_Ins	-	T	p.KK376fs
LIHC	TCGA-BC-A112-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64600786:64600918:64604504:64604701:64606658:64606791,	64604505	64604701	64604527	64604528	Frame_Shift_Ins	-	A	p.E1275fs
LIHC	TCGA-BC-A112-01	ATP6V1D	ENST00000556058.1,ENST00000555335.1,ENST00000555012.1,ENST00000554236.1,ENST00000216442.7	chr14	67817348:67817407:67819639:67819757:67826374:67826459,	67819640	67819757	67819690	67819691	Frame_Shift_Ins	-	T	p.N*36fs
LIHC	TCGA-BC-A112-01	SIPA1L1	ENST00000555818.1,ENST00000554874.1,ENST00000381232.3	chr14	72200382:72200529:72201993:72202108:72204960:72205042,72200382:72200529:72201993:72202108:72204957:72205042,	72201994	72202108	72202007	72202008	Frame_Shift_Ins	-	T	p.SF1695fs
LIHC	TCGA-BC-A112-01	PAPLN	ENST00000340738.5,ENST00000216658.5,ENST00000555445.1,ENST00000554301.1,ENST00000555700.1,ENST00000427855.1,ENST00000557061.1	chr14	73733208:73733336:73733430:73733539:73735264:73735431,	73733431	73733539	73733453	73733454	Frame_Shift_Ins	-	C	p.LP1138fs
LIHC	TCGA-BC-A112-01	NUMB	ENST00000555238.1,ENST00000557597.1,ENST00000359560.3,ENST00000355058.3,ENST00000535282.1,ENST00000556772.1	chr14	73743916:73744001:73745988:73746132:73749066:73749213,	73745989	73746132	73746070	73746071	Frame_Shift_Ins	-	G	p.S243fs
LIHC	TCGA-BC-A112-01	DYNC1H1	ENST00000360184.4	chr14	102500661:102500789:102502825:102502979:102504796:102504943,	102502826	102502979	102502843	102502844	Frame_Shift_Ins	-	C	p.A3591fs
LIHC	TCGA-BC-A112-01	MOK	ENST00000521766.1,ENST00000518482.1,ENST00000521493.1,ENST00000519877.1,ENST00000521388.1,ENST00000518399.1	chr14	102718297:102718332:102749814:102749929:102771298:102771471,	102749815	102749929	102749921	102749922	Frame_Shift_Ins	-	T	p.NN5fs
LIHC	TCGA-BC-A112-01	ZNF839	ENST00000559098.1,ENST00000262236.5,ENST00000442396.2	chr14	102786294:102786390:102792321:102793224:102797958:102798183,	102792322	102793224	102792687	102792688	Frame_Shift_Ins	-	T	p.S103fs
LIHC	TCGA-BC-A112-01	HERC2	ENST00000261609.7,ENST00000564383.1	chr15	28525213:28525433:28538033:28538168:28544547:28544629,	28538034	28538168	28538109	28538110	Frame_Shift_Ins	-	T	p.*83fs
LIHC	TCGA-BC-A112-01	RAD51	ENST00000532743.1,ENST00000525066.1,ENST00000557850.1,ENST00000267868.3,ENST00000382643.3	chr15	41021703:41021832:41022050:41022172:41023252:41023557,	41022051	41022172	41022163	41022164	Frame_Shift_Ins	-	A	p.Y296fs
LIHC	TCGA-BC-A112-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021441	42021442	Frame_Shift_Ins	-	A	p.Q1246fs
LIHC	TCGA-BC-A112-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742590	42742591	Frame_Shift_Ins	-	T	p.W604fs
LIHC	TCGA-BC-A112-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42743959	42743960	Frame_Shift_Ins	-	A	p.T148fs
LIHC	TCGA-BC-A112-01	ZSCAN29	ENST00000566849.1	chr15	43653270:43654139:43656112:43656685:43658307:43658972,	43656113	43656685	43656115	43656116	Frame_Shift_Ins	-	G	p.W563fs
LIHC	TCGA-BC-A112-01	ZSCAN29	ENST00000396976.2	chr15	43653270:43654139:43656112:43656580:43658307:43658972,	43656113	43656580	43656115	43656116	Frame_Shift_Ins	-	G	p.W563fs
LIHC	TCGA-BC-A112-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748816	43748817	Frame_Shift_Ins	-	C	p.F659fs
LIHC	TCGA-BC-A112-01	SERF2	ENST00000445816.1	chr15	44085172:44085281:44085907:44086134:44086571:44088287,	44085908	44086134	44085935	44085936	Frame_Shift_Ins	-	A	p.QK48fs
LIHC	TCGA-BC-A112-01	WDR76	ENST00000381246.2,ENST00000263795.6,ENST00000452115.1	chr15	44120272:44120564:44127258:44127348:44128358:44128414,	44127259	44127348	44127321	44127322	Frame_Shift_Ins	-	T	p.DF175fs
LIHC	TCGA-BC-A112-01	EIF3J	ENST00000558227.1,ENST00000535391.1,ENST00000261868.5	chr15	44843073:44843128:44843628:44843720:44846750:44846772,	44843629	44843720	44843632	44843633	Frame_Shift_Ins	-	A	p.E69fs
LIHC	TCGA-BC-A112-01	DUOX2	ENST00000603300.1,ENST00000389039.6	chr15	45392247:45392426:45392952:45393036:45393402:45393472,	45392953	45393036	45393009	45393010	Frame_Shift_Ins	-	G	p.R983fs
LIHC	TCGA-BC-A112-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577439	48577440	Frame_Shift_Ins	-	A	p.PK874fs
LIHC	TCGA-BC-A112-01	DTWD1	ENST00000559164.1	chr15	49913295:49913319:49917309:49917628:49924355:49924374,	49917310	49917628	49917429	49917430	Frame_Shift_Ins	-	A	p.K22fs
LIHC	TCGA-BC-A112-01	MYO5C	ENST00000443683.2,ENST00000261839.7,ENST00000560809.1,ENST00000558902.1	chr15	52539113:52539211:52539654:52539789:52540896:52540976,	52539655	52539789	52539735	52539736	Frame_Shift_Ins	-	A	p.LF600fs
LIHC	TCGA-BC-A112-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652153	55652154	Frame_Shift_Ins	-	T	p.N606fs
LIHC	TCGA-BC-A112-01	BNIP2	ENST00000267859.3,ENST00000415213.2,ENST00000607373.1,ENST00000560458.1	chr15	59970247:59970286:59971790:59971967:59972439:59972495,	59971791	59971967	59971800	59971801	Frame_Shift_Ins	-	A	p.LV216fs
LIHC	TCGA-BC-A112-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62214595:62214961:62217654:62217747:62219289:62219519,	62217655	62217747	62217669	62217670	Frame_Shift_Ins	-	T	p.I2199fs
LIHC	TCGA-BC-A112-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966950	64966951	Frame_Shift_Ins	-	A	p.K633fs
LIHC	TCGA-BC-A112-01	MTFMT	ENST00000558460.1,ENST00000558614.1	chr15	65316009:65316132:65319168:65319378:65321742:65321870,	65319169	65319378	65319209	65319210	Frame_Shift_Ins	-	A	p.LP126fs
LIHC	TCGA-BC-A112-01	DPP8	ENST00000300141.6,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6	chr15	65759015:65759151:65759408:65759561:65766546:65766626,	65759409	65759561	65759436	65759437	Frame_Shift_Ins	-	C	p.V570fs
LIHC	TCGA-BC-A112-01	EDC3	ENST00000563009.1,ENST00000315127.4,ENST00000568176.1,ENST00000569561.1,ENST00000426797.3	chr15	74948360:74948409:74963795:74964115:74967301:74967483,	74963796	74964115	74963938	74963939	Frame_Shift_Ins	-	G	p.P114fs
LIHC	TCGA-BC-A112-01	ULK3	ENST00000566479.1	chr15	75130097:75130139:75130492:75130514:75130606:75130685,	75130493	75130514	75130509	75130510	Frame_Shift_Ins	-	C	p.A424fs
LIHC	TCGA-BC-A112-01	ULK3	ENST00000566631.1,ENST00000568273.1,ENST00000561725.1,ENST00000440863.2,ENST00000570276.1,ENST00000568667.1,ENST00000568210.1,ENST00000569437.1	chr15	75130097:75130139:75130492:75130533:75130606:75130685,	75130493	75130533	75130509	75130510	Frame_Shift_Ins	-	C	p.A424fs
LIHC	TCGA-BC-A112-01	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83932205	83932206	Frame_Shift_Ins	-	C	p.A600fs
LIHC	TCGA-BC-A112-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91486141:91486312:91488121:91488293:91489843:91490144,	91488122	91488293	91488143	91488144	Frame_Shift_Ins	-	G	p.G335fs
LIHC	TCGA-BC-A112-01	RGMA	ENST00000329082.7	chr15	93595549:93595737:93616144:93616260:93632147:93632433,	93616145	93616260	93616148	93616149	Frame_Shift_Ins	-	G	p.S43fs
LIHC	TCGA-BC-A112-01	MCTP2	ENST00000451018.3	chr15	94986147:94986189:95001365:95001475:95013561:95013671,94945128:94945248:95001365:95001475:95013561:95013671,	95001366	95001475	95001379	95001380	Frame_Shift_Ins	-	G	p.R755fs
LIHC	TCGA-BC-A112-01	SNRPA1	ENST00000394082.4,ENST00000540017.2,ENST00000559309.1	chr15	101825171:101825265:101825930:101826006:101827112:101827215,	101825931	101826006	101826002	101826003	Frame_Shift_Ins	-	A	p.LS181fs
LIHC	TCGA-BC-A112-01	WDR90	ENST00000549091.1,ENST00000553080.1,ENST00000552728.1,ENST00000549024.1,ENST00000315764.4,ENST00000547407.1,ENST00000293879.4,ENST00000547944.1	chr16	716672:716792:716904:716989:717431:717829,	716905	716989	716928	716929	Frame_Shift_Ins	-	T	p.PF1678fs
LIHC	TCGA-BC-A112-01	RHOT2	ENST00000567589.1,ENST00000602564.1,ENST00000567017.1,ENST00000563637.1,ENST00000568950.1,ENST00000562333.1,ENST00000561929.1,ENST00000569675.1,ENST00000570280.1,ENST00000568636.1,ENST00000315082.4	chr16	720527:720557:720674:720773:720888:721000,720527:720557:720674:720773:720891:720940,	720675	720773	720680	720681	Frame_Shift_Ins	-	C	p.R183fs
LIHC	TCGA-BC-A112-01	HAGHL	ENST00000564537.1	chr16	777118:777140:777411:777614:777964:778029,777105:777175:777411:777614:777964:778029,	777412	777614	777605	777606	Frame_Shift_Ins	-	C	p.Q33fs
LIHC	TCGA-BC-A112-01	HAGHL	ENST00000562141.1	chr16	777118:777140:777481:777614:777964:778029,	777482	777614	777605	777606	Frame_Shift_Ins	-	C	p.Q33fs
LIHC	TCGA-BC-A112-01	BAIAP3	ENST00000397488.2,ENST00000421665.2,ENST00000426824.3,ENST00000397489.1,ENST00000568887.1,ENST00000562208.1,ENST00000324385.5	chr16	1396605:1396685:1396847:1396956:1397298:1397359,	1396848	1396956	1396898	1396899	Frame_Shift_Ins	-	G	p.R933fs
LIHC	TCGA-BC-A112-01	PRSS21	ENST00000005995.3,ENST00000450020.3,ENST00000575199.1	chr16	2867879:2867967:2868677:2868970:2870955:2871065,	2868678	2868970	2868702	2868703	Frame_Shift_Ins	-	G	p.V93fs
LIHC	TCGA-BC-A112-01	PRSS21	ENST00000574265.1,ENST00000455114.1,ENST00000577043.1	chr16	2867879:2867967:2868683:2868970:2870955:2871065,	2868684	2868970	2868702	2868703	Frame_Shift_Ins	-	G	p.V93fs
LIHC	TCGA-BC-A112-01	ROGDI	ENST00000586504.1,ENST00000591292.1,ENST00000591392.1,ENST00000589543.1,ENST00000586336.1,ENST00000322048.7,ENST00000587843.1	chr16	4848071:4848185:4848569:4848668:4849686:4849776,	4848570	4848668	4848611	4848612	Frame_Shift_Ins	-	G	p.H164fs
LIHC	TCGA-BC-A112-01	ROGDI	ENST00000588201.1	chr16	4848071:4848185:4848569:4848802:4849686:4849776,	4848570	4848802	4848611	4848612	Frame_Shift_Ins	-	G	p.H164fs
LIHC	TCGA-BC-A112-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944491	4944492	Frame_Shift_Ins	-	G	p.R457fs
LIHC	TCGA-BC-A112-01	USP7	ENST00000563961.1,ENST00000344836.4,ENST00000565455.1,ENST00000563043.1,ENST00000563085.1,ENST00000535863.1,ENST00000381886.4	chr16	8992450:8992496:8992977:8993045:8993460:8993614,	8992978	8993045	8992989	8992990	Frame_Shift_Ins	-	A	p.*840fs
LIHC	TCGA-BC-A112-01	CIITA	ENST00000324288.8,ENST00000537380.1,ENST00000573309.1,ENST00000571186.1,ENST00000570546.1,ENST00000381835.5,ENST00000576601.1	chr16	10989142:10989285:10989525:10989621:10992526:10992589,	10989526	10989621	10989569	10989570	Frame_Shift_Ins	-	T	p.V82fs
LIHC	TCGA-BC-A112-01	CLEC16A	ENST00000409552.3,ENST00000409790.1	chr16	11051638:11051767:11056311:11056445:11063017:11063166,	11056312	11056445	11056337	11056338	Frame_Shift_Ins	-	T	p.F79fs
LIHC	TCGA-BC-A112-01	NOMO2	ENST00000381474.3,ENST00000330537.6	chr16	18558549:18558622:18560842:18560949:18562760:18562861,	18560843	18560949	18560927	18560928	Frame_Shift_Ins	-	G	p.G142fs
LIHC	TCGA-BC-A112-01	TMC5	ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19451281:19452148:19455402:19455572:19460863:19460953,	19455403	19455572	19455456	19455457	Frame_Shift_Ins	-	C	p.A281fs
LIHC	TCGA-BC-A112-01	GP2	ENST00000381362.4	chr16	20334190:20334301:20335137:20335578:20337659:20337789,20334702:20334711:20335137:20335578:20337659:20337789,	20335138	20335578	20335409	20335410	Frame_Shift_Ins	-	T	p.N88fs
LIHC	TCGA-BC-A112-01	ACSM2B	ENST00000565232.1,ENST00000569327.1,ENST00000329697.6,ENST00000569364.1,ENST00000414188.2,ENST00000567001.1	chr16	20566764:20566798:20570558:20570769:20575990:20576175,	20570559	20570769	20570680	20570681	Frame_Shift_Ins	-	T	p.K89fs
LIHC	TCGA-BC-A112-01	SCNN1B	ENST00000343070.2	chr16	23313590:23313758:23359912:23360231:23364121:23364234,	23359913	23360231	23360222	23360223	Frame_Shift_Ins	-	C	p.T101fs
LIHC	TCGA-BC-A112-01	RBBP6	ENST00000348022.2,ENST00000381039.3,ENST00000568015.1,ENST00000567686.1,ENST00000319715.4	chr16	24560265:24560302:24564833:24564878:24566935:24567024,	24564834	24564878	24564864	24564865	Frame_Shift_Ins	-	C	p.P112fs
LIHC	TCGA-BC-A112-01	GSG1L	ENST00000380897.3,ENST00000395724.3,ENST00000447459.2	chr16	27818807:27818875:27840109:27840277:27856270:27856382,	27840110	27840277	27840265	27840266	Frame_Shift_Ins	-	C	p.V70fs
LIHC	TCGA-BC-A112-01	ASPHD1	ENST00000414952.2	chr16	29916172:29916286:29917108:29917280:29930851:29930953,	29917109	29917280	29917170	29917171	Frame_Shift_Ins	-	G	p.AG375fs
LIHC	TCGA-BC-A112-01	ITGAL	ENST00000563615.1,ENST00000358164.5	chr16	30515495:30515585:30516567:30516621:30516709:30516783,	30516568	30516621	30516610	30516611	Frame_Shift_Ins	-	A	p.N761fs
LIHC	TCGA-BC-A112-01	ITGAL	ENST00000356798.6	chr16	30515495:30515585:30516564:30516621:30516709:30516783,	30516565	30516621	30516610	30516611	Frame_Shift_Ins	-	A	p.N761fs
LIHC	TCGA-BC-A112-01	FBRS	ENST00000356166.6	chr16	30673879:30674180:30675535:30675837:30676035:30676241,	30675536	30675837	30675690	30675691	Frame_Shift_Ins	-	C	p.P404fs
LIHC	TCGA-BC-A112-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30735437	30735438	Frame_Shift_Ins	-	C	p.S1565fs
LIHC	TCGA-BC-A112-01	SETD1A	ENST00000262519.8,ENST00000452917.1	chr16	30970411:30970507:30972587:30972858:30974753:30974875,	30972588	30972858	30972682	30972683	Frame_Shift_Ins	-	C	p.S114fs
LIHC	TCGA-BC-A112-01	PHKB	ENST00000323584.5,ENST00000299167.8,ENST00000455779.1,ENST00000566044.1	chr16	47627410:47627468:47628047:47628125:47630283:47630442,	47628048	47628125	47628050	47628051	Frame_Shift_Ins	-	T	p.F370fs
LIHC	TCGA-BC-A112-01	FTO	ENST00000471389.1	chr16	53859775:53860403:53878066:53878210:53907697:53907777,	53878067	53878210	53878176	53878177	Frame_Shift_Ins	-	C	p.IP287fs
LIHC	TCGA-BC-A112-01	CDH16	ENST00000394055.3	chr16	66943888:66943996:66944162:66944339:66945084:66945218,	66944163	66944339	66944323	66944324	Frame_Shift_Ins	-	G	p.R669fs
LIHC	TCGA-BC-A112-01	CDH16	ENST00000568698.1,ENST00000570262.1,ENST00000568632.1,ENST00000299752.4	chr16	66943888:66943996:66944162:66944405:66945084:66945218,	66944163	66944405	66944323	66944324	Frame_Shift_Ins	-	G	p.R669fs
LIHC	TCGA-BC-A112-01	ACD	ENST00000602860.1,ENST00000393919.4,ENST00000219251.8	chr16	67691664:67691756:67691888:67692265:67692457:67692544,	67691889	67692265	67692083	67692084	Frame_Shift_Ins	-	G	p.L421fs
LIHC	TCGA-BC-A112-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67985725:67985940:67986086:67986328:67988545:67988676,	67986087	67986328	67986119	67986120	Frame_Shift_Ins	-	C	p.D297fs
LIHC	TCGA-BC-A112-01	NFATC3	ENST00000379165.4,ENST00000575270.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4	chr16	68119560:68119687:68155889:68157024:68160350:68160513,	68155890	68157024	68156442	68156443	Frame_Shift_Ins	-	C	p.S219fs
LIHC	TCGA-BC-A112-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000567239.1	chr16	69660305:69660431:69680930:69681489:69687138:69687331,	69680931	69681489	69681100	69681101	Frame_Shift_Ins	-	T	p.N48fs
LIHC	TCGA-BC-A112-01	PDPR	ENST00000398122.3,ENST00000564563.1,ENST00000569042.1,ENST00000567046.1,ENST00000542659.1,ENST00000563930.1,ENST00000288050.4,ENST00000568530.1	chr16	70182366:70182456:70187293:70187476:70190377:70190517,	70187294	70187476	70187392	70187393	Frame_Shift_Ins	-	T	p.NF717fs
LIHC	TCGA-BC-A112-01	HYDIN	ENST00000393567.2	chr16	71022295:71022415:71025220:71025299:71025972:71026113,	71025221	71025299	71025246	71025247	Frame_Shift_Ins	-	T	p.E1280fs
LIHC	TCGA-BC-A112-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830671	72830672	Frame_Shift_Ins	-	T	p.K1970fs
LIHC	TCGA-BC-A112-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831237	72831238	Frame_Shift_Ins	-	G	p.D1782fs
LIHC	TCGA-BC-A112-01	CNTNAP4	ENST00000469589.1,ENST00000463177.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000471618.1,ENST00000478060.1,ENST00000469667.1	chr16	76350309:76350420:76389214:76389408:76461348:76461496,	76389215	76389408	76389284	76389285	Frame_Shift_Ins	-	G	p.R88fs
LIHC	TCGA-BC-A112-01	VAT1L	ENST00000302536.2	chr16	77913065:77913121:77918504:77918699:78005746:78005830,	77918505	77918699	77918605	77918606	Frame_Shift_Ins	-	G	p.G328fs
LIHC	TCGA-BC-A112-01	VAT1L	ENST00000302536.2	chr16	77913065:77913121:77918504:77918699:78005746:78005830,	77918505	77918699	77918628	77918629	Frame_Shift_Ins	-	A	p.K336fs
LIHC	TCGA-BC-A112-01	MBTPS1	ENST00000569770.1,ENST00000343411.3,ENST00000565863.1	chr16	84115356:84115513:84118587:84118739:84120962:84121065,	84118588	84118739	84118655	84118656	Frame_Shift_Ins	-	C	p.P407fs
LIHC	TCGA-BC-A112-01	MTHFSD	ENST00000566050.1	chr16	86582093:86582183:86585578:86585752:86588250:86588354,	86585579	86585752	86585749	86585750	Frame_Shift_Ins	-	C	p.GL41fs
LIHC	TCGA-BC-A112-01	MTHFSD	ENST00000561989.1,ENST00000566469.1,ENST00000565482.1,ENST00000322911.6,ENST00000562940.2,ENST00000360900.6	chr16	86582093:86582183:86585638:86585752:86588250:86588354,	86585639	86585752	86585749	86585750	Frame_Shift_Ins	-	C	p.GL41fs
LIHC	TCGA-BC-A112-01	PAFAH1B1	ENST00000397195.5,ENST00000574816.1,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2583457:2583614:2585022:2585038,2579798:2579900:2583457:2583614:2585022:2585038,	2583458	2583614	2583578	2583579	Frame_Shift_Ins	-	C	p.P375fs
LIHC	TCGA-BC-A112-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462267	5462268	Frame_Shift_Ins	-	T	p.N583fs
LIHC	TCGA-BC-A112-01	COX10	ENST00000261643.3	chr17	13977639:13977773:13980051:13980373:14005434:14005559,	13980052	13980373	13980292	13980293	Frame_Shift_Ins	-	A	p.K140fs
LIHC	TCGA-BC-A112-01	COPS3	ENST00000577210.1,ENST00000578317.1,ENST00000584216.1,ENST00000539941.2,ENST00000268717.5,ENST00000486810.1	chr17	17158200:17158259:17165279:17165420:17168115:17168295,17163711:17163788:17165279:17165420:17168115:17168295,	17165280	17165420	17165364	17165365	Frame_Shift_Ins	-	T	p.I206fs
LIHC	TCGA-BC-A112-01	COPS3	ENST00000584216.1	chr17	17171198:17171291:17174209:17174322:17179348:17179380,	17174210	17174322	17174281	17174282	Frame_Shift_Ins	-	T	p.A56fs
LIHC	TCGA-BC-A112-01	COPS3	ENST00000462236.1	chr17	17171198:17171291:17174071:17174322:17179348:17179380,	17174072	17174322	17174281	17174282	Frame_Shift_Ins	-	T	p.A56fs
LIHC	TCGA-BC-A112-01	ALDH3A1	ENST00000426645.2,ENST00000494157.2,ENST00000395555.3,ENST00000468746.1,ENST00000457500.2,ENST00000225740.6,ENST00000444455.1,ENST00000439102.2,ENST00000479677.2	chr17	19644405:19644523:19645316:19645525:19645857:19645943,	19645317	19645525	19645370	19645371	Frame_Shift_Ins	-	C	p.G212fs
LIHC	TCGA-BC-A112-01	MAP2K3	ENST00000395491.2,ENST00000342679.4,ENST00000496046.1,ENST00000316920.6,ENST00000361818.5	chr17	21208362:21208440:21215453:21215593:21216803:21216849,	21215454	21215593	21215501	21215502	Frame_Shift_Ins	-	T	p.P275fs
LIHC	TCGA-BC-A112-01	WSB1	ENST00000348811.2,ENST00000262394.2,ENST00000467843.2	chr17	25637086:25637200:25638534:25638642:25639235:25639913,	25638535	25638642	25638629	25638630	Frame_Shift_Ins	-	T	p.F365fs
LIHC	TCGA-BC-A112-01	DHRS13	ENST00000394901.3,ENST00000378895.4	chr17	27225840:27225910:27228007:27228319:27228510:27228634,	27228008	27228319	27228162	27228163	Frame_Shift_Ins	-	C	p.A126fs
LIHC	TCGA-BC-A112-01	TAOK1	ENST00000261716.3,ENST00000536202.1,ENST00000577583.1	chr17	27829606:27829741:27834913:27835150:27837881:27838010,	27834914	27835150	27834923	27834924	Frame_Shift_Ins	-	A	p.N450fs
LIHC	TCGA-BC-A112-01	CPD	ENST00000543464.2,ENST00000225719.4	chr17	28772708:28773038:28776570:28776766:28778728:28778755,	28776571	28776766	28776742	28776743	Frame_Shift_Ins	-	A	p.*K1015fs
LIHC	TCGA-BC-A112-01	NF1	ENST00000358273.4	chr17	29576006:29576137:29579955:29580018:29584704:29584744,29576006:29576137:29579955:29580018:29585361:29585520,	29579956	29580018	29580009	29580010	Frame_Shift_Ins	-	A	p.KK1388fs
LIHC	TCGA-BC-A112-01	LASP1	ENST00000318008.6,ENST00000435347.3,ENST00000443937.3,ENST00000433206.2,ENST00000585841.1	chr17	37070649:37070728:37071295:37071399:37074857:37075428,	37071296	37071399	37071396	37071397	Frame_Shift_Ins	-	G	p.E204fs
LIHC	TCGA-BC-A112-01	PLXDC1	ENST00000578390.1,ENST00000394318.3,ENST00000394316.2	chr17	37265500:37265644:37295906:37296085:37309176:37309280,37265500:37265644:37295906:37296085:37308798:37308865,37265500:37265644:37295906:37296085:37307614:37307772,	37295907	37296085	37296033	37296034	Frame_Shift_Ins	-	C	p.V43fs
LIHC	TCGA-BC-A112-01	ZPBP2	ENST00000377940.3,ENST00000348931.4	chr17	38027716:38027878:38028522:38028741:38029296:38029379,	38028523	38028741	38028562	38028563	Frame_Shift_Ins	-	T	p.L127fs
LIHC	TCGA-BC-A112-01	ACLY	ENST00000352035.2,ENST00000393896.2,ENST00000353196.1,ENST00000537919.1,ENST00000590151.1,ENST00000590770.1	chr17	40054053:40054092:40054883:40055038:40057948:40058066,	40054884	40055038	40055036	40055037	Frame_Shift_Ins	-	C	p.D396fs
LIHC	TCGA-BC-A112-01	NAGLU	ENST00000225927.2	chr17	40690687:40690773:40692967:40693224:40695045:40695338,	40692968	40693224	40693057	40693058	Frame_Shift_Ins	-	C	p.A285fs
LIHC	TCGA-BC-A112-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244016	41244017	Frame_Shift_Ins	-	A	p.LQ881fs
LIHC	TCGA-BC-A112-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244052	41244053	Frame_Shift_Ins	-	A	p.*870fs
LIHC	TCGA-BC-A112-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41246531	41246532	Frame_Shift_Ins	-	T	p.S43fs
LIHC	TCGA-BC-A112-01	G6PC3	ENST00000588558.1,ENST00000269097.4,ENST00000590639.1,ENST00000585361.1	chr17	42151527:42151634:42152047:42152138:42152336:42152455,	42152048	42152138	42152117	42152118	Frame_Shift_Ins	-	G	p.R132fs
LIHC	TCGA-BC-A112-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44249117	44249118	Frame_Shift_Ins	-	A	p.*131fs
LIHC	TCGA-BC-A112-01	NPEPPS	ENST00000527298.1	chr17	45662865:45663066:45663513:45663610:45663730:45663764,45663079:45663111:45663513:45663610:45663730:45663764,	45663514	45663610	45663522	45663523	Frame_Shift_Ins	-	A	p.N287fs
LIHC	TCGA-BC-A112-01	NPEPPS	ENST00000527298.1,ENST00000602788.1,ENST00000544660.1,ENST00000525037.1,ENST00000322157.4,ENST00000530173.1	chr17	45663513:45663610:45663730:45663764:45664595:45664710,	45663731	45663764	45663733	45663734	Frame_Shift_Ins	-	C	p.H317fs
LIHC	TCGA-BC-A112-01	B4GALNT2	ENST00000300404.2,ENST00000504681.1,ENST00000393354.2	chr17	47237916:47238003:47241449:47241637:47243475:47243616,	47241450	47241637	47241583	47241584	Frame_Shift_Ins	-	C	p.NP360fs
LIHC	TCGA-BC-A112-01	SLC35B1	ENST00000240333.6,ENST00000514907.1,ENST00000508520.1,ENST00000415270.2,ENST00000515850.1,ENST00000435059.2	chr17	47783246:47783258:47783565:47783696:47784326:47784429,	47783566	47783696	47783682	47783683	Frame_Shift_Ins	-	A	p.LH74fs
LIHC	TCGA-BC-A112-01	SGCA	ENST00000344627.6,ENST00000512526.1,ENST00000511303.1,ENST00000513942.1	chr17	48245307:48245380:48245734:48245933:48248000:48248027,	48245735	48245933	48245762	48245763	Frame_Shift_Ins	-	C	p.S138fs
LIHC	TCGA-BC-A112-01	SEPT4	ENST00000317268.3,ENST00000579371.1,ENST00000393086.1,ENST00000457347.2,ENST00000426861.1,ENST00000577440.1,ENST00000317256.6,ENST00000584488.1,ENST00000580844.1,ENST00000583114.1,ENST00000583273.1,ENST00000580796.1,ENST00000412945.3	chr17	56598614:56598711:56598905:56599007:56599096:56599214,	56598906	56599007	56598983	56598984	Frame_Shift_Ins	-	A	p.LN328fs
LIHC	TCGA-BC-A112-01	TRIM37	ENST00000583945.1	chr17	57060011:57060282:57076741:57076820:57089688:57089768,	57076742	57076820	57076803	57076804	Frame_Shift_Ins	-	A	p.*783fs
LIHC	TCGA-BC-A112-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61428610:61428777:61432143:61432751:61457078:61457187,	61432144	61432751	61432610	61432611	Frame_Shift_Ins	-	T	p.V740fs
LIHC	TCGA-BC-A112-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62291319	62291320	Frame_Shift_Ins	-	G	p.P87fs
LIHC	TCGA-BC-A112-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65900817:65900956:65905697:65905877:65906992:65909303,	65905698	65905877	65905767	65905768	Frame_Shift_Ins	-	A	p.K1087fs
LIHC	TCGA-BC-A112-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67302921	67302922	Frame_Shift_Ins	-	T	p.KK244fs
LIHC	TCGA-BC-A112-01	SDK2	ENST00000479356.1,ENST00000388726.3,ENST00000392650.3,ENST00000424778.1,ENST00000410094.1	chr17	71357822:71357984:71361396:71361534:71364545:71364732,	71361397	71361534	71361529	71361530	Frame_Shift_Ins	-	G	p.R1725fs
LIHC	TCGA-BC-A112-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436199	72436200	Frame_Shift_Ins	-	G	p.R140fs
LIHC	TCGA-BC-A112-01	HID1	ENST00000425042.2,ENST00000525128.1,ENST00000534480.1	chr17	72959865:72960005:72960577:72960727:72968685:72968811,	72960578	72960727	72960637	72960638	Frame_Shift_Ins	-	T	p.R53fs
LIHC	TCGA-BC-A112-01	SAP30BP	ENST00000583737.1,ENST00000577292.1,ENST00000580484.1,ENST00000579877.1,ENST00000580322.1,ENST00000578909.1,ENST00000582022.1,ENST00000584667.1,ENST00000542343.1,ENST00000579864.1	chr17	73667895:73667943:73689519:73689562:73695862:73695951,	73689520	73689562	73689560	73689561	Frame_Shift_Ins	-	G	p.G102fs
LIHC	TCGA-BC-A112-01	ACOX1	ENST00000301608.4	chr17	73956295:73956456:73969705:73969866:73974614:73974774,73953595:73953647:73969705:73969866:73974614:73974774,	73969706	73969866	73969847	73969848	Frame_Shift_Ins	-	A	p.G97fs
LIHC	TCGA-BC-A112-01	ZACN	ENST00000334586.5,ENST00000425015.1,ENST00000421794.1	chr17	74077680:74077836:74077962:74078130:74078543:74078747,	74077963	74078130	74078084	74078085	Frame_Shift_Ins	-	G	p.RG334fs
LIHC	TCGA-BC-A112-01	ASPSCR1	ENST00000344865.6,ENST00000582355.2,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000306739.4	chr17	79953867:79953941:79954295:79954722:79966912:79966915,	79954296	79954722	79954530	79954531	Frame_Shift_Ins	-	G	p.GG247fs
LIHC	TCGA-BC-A112-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274164	80274165	Frame_Shift_Ins	-	G	p.P173fs
LIHC	TCGA-BC-A112-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000581631.1,ENST00000584897.1,ENST00000577880.1	chr18	2729272:2729407:2732262:2732490:2738394:2738543,	2732263	2732490	2732388	2732389	Frame_Shift_Ins	-	A	p.L1059fs
LIHC	TCGA-BC-A112-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6080879:6080950:6093353:6093527:6138192:6138295,	6093354	6093527	6093379	6093380	Frame_Shift_Ins	-	T	p.*450fs
LIHC	TCGA-BC-A112-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255075	9255076	Frame_Shift_Ins	-	A	p.K581fs
LIHC	TCGA-BC-A112-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9563375:9563548:9570154:9570681:9577061:9577189,	9570155	9570681	9570354	9570355	Frame_Shift_Ins	-	A	p.L458fs
LIHC	TCGA-BC-A112-01	PIEZO2	ENST00000538948.1,ENST00000285141.4,ENST00000503781.3,ENST00000579151.1,ENST00000580640.1,ENST00000582913.1,ENST00000302079.6	chr18	10677743:10677872:10680195:10680368:10681657:10681725,	10680196	10680368	10680206	10680207	Frame_Shift_Ins	-	C	p.Y2472fs
LIHC	TCGA-BC-A112-01	PSMG2	ENST00000317615.6,ENST00000585331.2,ENST00000586445.1,ENST00000590217.1	chr18	12718515:12718634:12720508:12720682:12724497:12724519,	12720509	12720682	12720591	12720592	Frame_Shift_Ins	-	A	p.K164fs
LIHC	TCGA-BC-A112-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000584446.1,ENST00000580732.2,ENST00000578368.1,ENST00000400483.4,ENST00000431264.1	chr18	18964166:18964364:18975345:18975522:18981110:18981287,	18975346	18975522	18975505	18975506	Frame_Shift_Ins	-	A	p.E172fs
LIHC	TCGA-BC-A112-01	ESCO1	ENST00000269214.5	chr18	19120537:19120661:19140819:19140951:19144163:19144278,19119880:19119970:19140819:19140951:19144163:19144278,	19140820	19140951	19140935	19140936	Frame_Shift_Ins	-	T	p.I613fs
LIHC	TCGA-BC-A112-01	GATA6	ENST00000581694.1,ENST00000269216.3	chr18	19761413:19761539:19762717:19762805:19762900:19763004,	19762718	19762805	19762738	19762739	Frame_Shift_Ins	-	A	p.IK483fs
LIHC	TCGA-BC-A112-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21736177	21736178	Frame_Shift_Ins	-	A	p.N140fs
LIHC	TCGA-BC-A112-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806602	22806603	Frame_Shift_Ins	-	T	p.Y427fs
LIHC	TCGA-BC-A112-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706788	33706789	Frame_Shift_Ins	-	A	p.L61fs
LIHC	TCGA-BC-A112-01	ELP2	ENST00000539560.1	chr18	33744437:33744630:33747115:33747185:33750025:33750159,	33747116	33747185	33747167	33747168	Frame_Shift_Ins	-	G	p.E687fs
LIHC	TCGA-BC-A112-01	ELP2	ENST00000423854.2,ENST00000350494.6,ENST00000542824.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33739920:33739978:33747063:33747185:33750025:33750159,33744437:33744630:33747063:33747185:33750025:33750159,	33747064	33747185	33747167	33747168	Frame_Shift_Ins	-	G	p.E687fs
LIHC	TCGA-BC-A112-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34297921	34297922	Frame_Shift_Ins	-	G	p.R712fs
LIHC	TCGA-BC-A112-01	KIAA1328	ENST00000280020.5,ENST00000435985.2,ENST00000592521.1,ENST00000591619.1	chr18	34415196:34415339:34424170:34424265:34465519:34465635,	34424171	34424265	34424180	34424181	Frame_Shift_Ins	-	G	p.G79fs
LIHC	TCGA-BC-A112-01	PIK3C3	ENST00000593098.1,ENST00000262039.4,ENST00000398870.3	chr18	39623696:39623781:39629494:39629569:39637846:39638015,	39629495	39629569	39629551	39629552	Frame_Shift_Ins	-	T	p.F749fs
LIHC	TCGA-BC-A112-01	EPG5	ENST00000592272.1,ENST00000590884.1,ENST00000587884.1,ENST00000282041.5,ENST00000585906.1	chr18	43458977:43459179:43460039:43460188:43462238:43462396,	43460040	43460188	43460101	43460102	Frame_Shift_Ins	-	C	p.S1869fs
LIHC	TCGA-BC-A112-01	DYM	ENST00000269445.6,ENST00000579058.1,ENST00000578596.1,ENST00000418472.2,ENST00000583353.1	chr18	46905028:46905070:46906034:46906128:46917962:46918012,	46906035	46906128	46906121	46906122	Frame_Shift_Ins	-	T	p.K67fs
LIHC	TCGA-BC-A112-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55361813:55361902:55362402:55362561:55362681:55362764,	55362403	55362561	55362556	55362557	Frame_Shift_Ins	-	A	p.*263fs
LIHC	TCGA-BC-A112-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246441	56246442	Frame_Shift_Ins	-	C	p.G523fs
LIHC	TCGA-BC-A112-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56383166:56383199:56390279:56390483:56400628:56400806,	56390280	56390483	56390294	56390295	Frame_Shift_Ins	-	C	p.P345fs
LIHC	TCGA-BC-A112-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470369	77470370	Frame_Shift_Ins	-	T	p.F266fs
LIHC	TCGA-BC-A112-01	SBNO2	ENST00000587024.1	chr19	1149367:1149441:1154182:1154401:1174170:1174255,	1154183	1154401	1154260	1154261	Frame_Shift_Ins	-	C	p.R6fs
LIHC	TCGA-BC-A112-01	DOT1L	ENST00000452696.1	chr19	2189730:2189794:2191082:2191239:2193687:2193782,	2191083	2191239	2191220	2191221	Frame_Shift_Ins	-	T	p.C159fs
LIHC	TCGA-BC-A112-01	DOT1L	ENST00000398665.3	chr19	2189730:2189794:2191010:2191239:2193687:2193782,	2191011	2191239	2191220	2191221	Frame_Shift_Ins	-	T	p.C159fs
LIHC	TCGA-BC-A112-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590381	5590382	Frame_Shift_Ins	-	G	p.R811fs
LIHC	TCGA-BC-A112-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755277	6755278	Frame_Shift_Ins	-	G	p.R182fs
LIHC	TCGA-BC-A112-01	TIMM44	ENST00000600748.1,ENST00000270538.3,ENST00000595831.1	chr19	7999949:8000030:8002911:8003082:8005986:8006082,	8002912	8003082	8003076	8003077	Frame_Shift_Ins	-	T	p.NI49fs
LIHC	TCGA-BC-A112-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8136931:8137082:8137946:8138181:8139954:8140074,	8137947	8138181	8138137	8138138	Frame_Shift_Ins	-	G	p.L2583fs
LIHC	TCGA-BC-A112-01	RNASEH2A	ENST00000590121.1,ENST00000221486.4	chr19	12917821:12917893:12918019:12918143:12918232:12918320,	12918020	12918143	12918138	12918139	Frame_Shift_Ins	-	G	p.A107fs
LIHC	TCGA-BC-A112-01	RFX1	ENST00000589760.1,ENST00000589239.1	chr19	14094297:14094407:14104336:14104707:14116914:14117074,	14104337	14104707	14104471	14104472	Frame_Shift_Ins	-	G	p.A62fs
LIHC	TCGA-BC-A112-01	MAST3	ENST00000262811.6	chr19	18256552:18256675:18257690:18257827:18258252:18258434,	18257691	18257827	18257759	18257760	Frame_Shift_Ins	-	A	p.E1049fs
LIHC	TCGA-BC-A112-01	TM6SF2	ENST00000389363.4,ENST00000431465.2	chr19	19381153:19381251:19381830:19381934:19383929:19384065,	19381831	19381934	19381929	19381930	Frame_Shift_Ins	-	G	p.V34fs
LIHC	TCGA-BC-A112-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300077	21300078	Frame_Shift_Ins	-	A	p.R203fs
LIHC	TCGA-BC-A112-01	RHPN2	ENST00000400226.4,ENST00000588388.1,ENST00000254260.3	chr19	33517409:33517538:33535154:33535270:33555689:33555794,	33535155	33535270	33535163	33535164	Frame_Shift_Ins	-	T	p.T59fs
LIHC	TCGA-BC-A112-01	KIAA0355	ENST00000299505.6	chr19	34830771:34830897:34832326:34833360:34838781:34838947,	34832327	34833360	34832573	34832574	Frame_Shift_Ins	-	A	p.N579fs
LIHC	TCGA-BC-A112-01	DMKN	ENST00000402589.2,ENST00000498211.1,ENST00000467637.1,ENST00000419602.1,ENST00000480502.1,ENST00000601650.1,ENST00000462126.1,ENST00000464709.2,ENST00000408915.2,ENST00000483855.1,ENST00000414866.2,ENST00000602781.1,ENST00000429837.1,ENST00000462721.1,ENST00000436012.1,ENST00000493979.1,ENST00000460327.1,ENST00000339686.3,ENST00000597212.1,ENST00000490622.1,ENST00000467532.1,ENST00000469960.1,ENST00000460051.1,ENST00000492341.2,ENST00000463292.1,ENST00000488762.1,ENST00000434389.1,ENST00000488542.2,ENST00000443640.1,ENST00000472252.2	chr19	35989621:35989665:35989775:35989799:35990859:35990931,	35989776	35989799	35989794	35989795	Frame_Shift_Ins	-	C	p.G455fs
LIHC	TCGA-BC-A112-01	HAUS5	ENST00000587439.1,ENST00000379045.2	chr19	36108756:36108814:36108972:36109097:36109470:36109601,	36108973	36109097	36109065	36109066	Frame_Shift_Ins	-	G	p.RG263fs
LIHC	TCGA-BC-A112-01	DPF1	ENST00000438060.1,ENST00000355526.4,ENST00000414789.1,ENST00000416611.1,ENST00000412732.1,ENST00000418517.1,ENST00000456296.1	chr19	38706992:38707043:38708099:38708231:38708437:38708516,	38708100	38708231	38708110	38708111	Frame_Shift_Ins	-	T	p.K240fs
LIHC	TCGA-BC-A112-01	GGN	ENST00000334928.6	chr19	38874992:38875169:38876060:38877920:38878400:38878462,	38876061	38877920	38876294	38876295	Frame_Shift_Ins	-	C	p.G536fs
LIHC	TCGA-BC-A112-01	GGN	ENST00000585737.1	chr19	38876060:38876140:38876286:38877654:38878400:38878462,	38876287	38877654	38876294	38876295	Frame_Shift_Ins	-	C	p.G536fs
LIHC	TCGA-BC-A112-01	RINL	ENST00000598904.1,ENST00000591812.1,ENST00000340740.3	chr19	39361717:39361867:39362286:39362351:39362437:39362510,	39362287	39362351	39362318	39362319	Frame_Shift_Ins	-	G	p.P26fs
LIHC	TCGA-BC-A112-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914582	39914583	Frame_Shift_Ins	-	T	p.F908fs
LIHC	TCGA-BC-A112-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599117.1,ENST00000598725.1	chr19	39950531:39950600:39955437:39955689:39957119:39957209,	39955438	39955689	39955532	39955533	Frame_Shift_Ins	-	G	p.G240fs
LIHC	TCGA-BC-A112-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961027	39961028	Frame_Shift_Ins	-	C	p.P514fs
LIHC	TCGA-BC-A112-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961032	39961033	Frame_Shift_Ins	-	G	p.G516fs
LIHC	TCGA-BC-A112-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1,ENST00000599719.1	chr19	41787067:41787180:41798149:41798416:41800242:41800293,	41798150	41798416	41798238	41798239	Frame_Shift_Ins	-	G	p.W363fs
LIHC	TCGA-BC-A112-01	CEACAM7	ENST00000401731.1	chr19	42187975:42187994:42190789:42191152:42192030:42192096,	42190790	42191152	42191142	42191143	Frame_Shift_Ins	-	A	p.Y25fs
LIHC	TCGA-BC-A112-01	TMEM145	ENST00000598766.1	chr19	42818423:42818498:42818572:42818680:42818764:42818846,	42818573	42818680	42818580	42818581	Frame_Shift_Ins	-	C	p.A68fs
LIHC	TCGA-BC-A112-01	LYPD5	ENST00000602179.1,ENST00000594049.1,ENST00000414615.2,ENST00000594013.1,ENST00000377950.3	chr19	44302653:44302753:44302963:44303140:44303857:44303986,	44302964	44303140	44303093	44303094	Frame_Shift_Ins	-	C	p.S81fs
LIHC	TCGA-BC-A112-01	APOE	ENST00000446996.1,ENST00000434152.1,ENST00000252486.4,ENST00000425718.1	chr19	45409873:45409924:45411016:45411209:45411789:45411859,	45411017	45411209	45411116	45411117	Frame_Shift_Ins	-	G	p.R48fs
LIHC	TCGA-BC-A112-01	TRAPPC6A	ENST00000588062.1,ENST00000585934.1,ENST00000006275.4,ENST00000592647.1	chr19	45667173:45667267:45667421:45667505:45668110:45668228,	45667422	45667505	45667424	45667425	Frame_Shift_Ins	-	G	p.V132fs
LIHC	TCGA-BC-A112-01	HIF3A	ENST00000529542.1	chr19	46828791:46828896:46832337:46832735:46834412:46834530,	46832338	46832735	46832570	46832571	Frame_Shift_Ins	-	G	p.R460fs
LIHC	TCGA-BC-A112-01	HIF3A	ENST00000600383.1,ENST00000244302.4,ENST00000420102.2,ENST00000377670.4,ENST00000300862.3,ENST00000244303.6,ENST00000291300.4,ENST00000339613.2	chr19	46828791:46828896:46832463:46832735:46834412:46834530,	46832464	46832735	46832570	46832571	Frame_Shift_Ins	-	G	p.R460fs
LIHC	TCGA-BC-A112-01	NAPA	ENST00000595227.1,ENST00000593905.1,ENST00000263354.3,ENST00000593761.1,ENST00000594001.1,ENST00000601208.1	chr19	47994100:47994113:47995271:47995376:47996217:47996302,	47995272	47995376	47995348	47995349	Frame_Shift_Ins	-	G	p.P197fs
LIHC	TCGA-BC-A112-01	LIG1	ENST00000601091.1,ENST00000594067.1,ENST00000263274.7,ENST00000536218.1,ENST00000594759.1,ENST00000427526.2	chr19	48640264:48640341:48640778:48640945:48643227:48643400,	48640779	48640945	48640892	48640893	Frame_Shift_Ins	-	C	p.G381fs
LIHC	TCGA-BC-A112-01	LIG1	ENST00000542460.1	chr19	48640264:48640341:48640778:48641016:48643227:48643400,	48640779	48641016	48640892	48640893	Frame_Shift_Ins	-	C	p.G381fs
LIHC	TCGA-BC-A112-01	SYNGR4	ENST00000344846.2	chr19	48876773:48877011:48878869:48879009:48879341:48879528,	48878870	48879009	48878951	48878952	Frame_Shift_Ins	-	G	p.R138fs
LIHC	TCGA-BC-A112-01	FLT3LG	ENST00000600429.1,ENST00000596435.1,ENST00000597551.1,ENST00000204637.2,ENST00000600084.1,ENST00000594009.1,ENST00000595510.1,ENST00000601800.1	chr19	49982219:49982304:49983554:49983733:49983808:49983877,	49983555	49983733	49983622	49983623	Frame_Shift_Ins	-	C	p.HP101fs
LIHC	TCGA-BC-A112-01	VRK3	ENST00000594092.1,ENST00000601912.1	chr19	50484956:50485445:50491628:50491749:50492895:50493028,	50491629	50491749	50491740	50491741	Frame_Shift_Ins	-	G	p.P369fs
LIHC	TCGA-BC-A112-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000599857.1,ENST00000595904.1	chr19	50905034:50905181:50905255:50905381:50905461:50905630,	50905256	50905381	50905323	50905324	Frame_Shift_Ins	-	G	p.RG177fs
LIHC	TCGA-BC-A112-01	CNOT3	ENST00000447684.1,ENST00000358389.3	chr19	54656603:54656736:54656917:54657130:54657233:54657242,	54656918	54657130	54657125	54657126	Frame_Shift_Ins	-	C	p.P568fs
LIHC	TCGA-BC-A112-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56201232:56201316:56203119:56203423:56204051:56204162,	56203120	56203423	56203214	56203215	Frame_Shift_Ins	-	C	p.A372fs
LIHC	TCGA-BC-A112-01	GALP	ENST00000357330.2	chr19	56688477:56688564:56691954:56692003:56693540:56693603,	56691955	56692003	56691991	56691992	Frame_Shift_Ins	-	T	p.S42fs
LIHC	TCGA-BC-A112-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58437753	58437754	Frame_Shift_Ins	-	T	p.I599fs
LIHC	TCGA-BC-A112-01	C20orf194	ENST00000498079.1,ENST00000252032.9,ENST00000453730.2	chr20	3278675:3278822:3285086:3285190:3295679:3295767,	3285087	3285190	3285108	3285109	Frame_Shift_Ins	-	T	p.I587fs
LIHC	TCGA-BC-A112-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10630169:10630283:10630894:10631008:10632228:10632342,	10630895	10631008	10630968	10630969	Frame_Shift_Ins	-	C	p.D387fs
LIHC	TCGA-BC-A112-01	SPTLC3	ENST00000434210.1,ENST00000399002.2,ENST00000378194.4,ENST00000450297.1	chr20	12989996:12990032:13029592:13029778:13052903:13053019,	13029593	13029778	13029765	13029766	Frame_Shift_Ins	-	A	p.K97fs
LIHC	TCGA-BC-A112-01	KIF16B	ENST00000408042.1,ENST00000355755.3,ENST00000378003.2,ENST00000354981.2	chr20	16352309:16352406:16354901:16355054:16359449:16360808,	16354902	16355054	16354981	16354982	Frame_Shift_Ins	-	C	p.GP1090fs
LIHC	TCGA-BC-A112-01	POLR3F	ENST00000377603.4,ENST00000489753.1,ENST00000462997.1	chr20	18454034:18454102:18455718:18455831:18460681:18460825,	18455719	18455831	18455798	18455799	Frame_Shift_Ins	-	A	p.RK132fs
LIHC	TCGA-BC-A112-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956393	19956394	Frame_Shift_Ins	-	C	p.A624fs
LIHC	TCGA-BC-A112-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329623	33329624	Frame_Shift_Ins	-	A	p.C1479fs
LIHC	TCGA-BC-A112-01	CEP250	ENST00000461386.1,ENST00000342580.4,ENST00000397527.1	chr20	34055128:34055380:34057714:34057811:34059874:34059955,	34057715	34057811	34057770	34057771	Frame_Shift_Ins	-	A	p.K303fs
LIHC	TCGA-BC-A112-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36639973	36639974	Frame_Shift_Ins	-	A	p.R749fs
LIHC	TCGA-BC-A112-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640975	36640976	Frame_Shift_Ins	-	T	p.K415fs
LIHC	TCGA-BC-A112-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641027	36641028	Frame_Shift_Ins	-	T	p.NL397fs
LIHC	TCGA-BC-A112-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641690	36641691	Frame_Shift_Ins	-	T	p.F177fs
LIHC	TCGA-BC-A112-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832435	39832436	Frame_Shift_Ins	-	T	p.N374fs
LIHC	TCGA-BC-A112-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832435	39832436	Frame_Shift_Ins	-	T	p.N374fs
LIHC	TCGA-BC-A112-01	LPIN3	ENST00000373257.3	chr20	39980699:39980860:39981245:39981339:39981437:39981507,	39981246	39981339	39981325	39981326	Frame_Shift_Ins	-	A	p.N482fs
LIHC	TCGA-BC-A112-01	MYBL2	ENST00000396863.4,ENST00000217026.4	chr20	42315491:42315712:42320796:42320959:42328396:42328605,	42320797	42320959	42320836	42320837	Frame_Shift_Ins	-	A	p.IK180fs
LIHC	TCGA-BC-A112-01	PIGT	ENST00000535404.1,ENST00000279036.6,ENST00000372689.5,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44048147:44048230:44048775:44048863:44048971:44049069,	44048776	44048863	44048846	44048847	Frame_Shift_Ins	-	G	p.R251fs
LIHC	TCGA-BC-A112-01	ZNF217	ENST00000371471.2,ENST00000302342.3	chr20	52185358:52185803:52188259:52188392:52192265:52192566,	52188260	52188392	52188287	52188288	Frame_Shift_Ins	-	T	p.L1048fs
LIHC	TCGA-BC-A112-01	PPP4R1L	ENST00000334187.8,ENST00000244070.3,ENST00000495058.1	chr20	56826812:56826920:56846418:56846561:56847824:56847881,	56846419	56846561	56846556	56846557	Frame_Shift_Ins	-	G	p.S100fs
LIHC	TCGA-BC-A112-01	LAMA5	ENST00000252999.3	chr20	60908619:60908762:60908956:60909095:60909241:60909398,	60908957	60909095	60909019	60909020	Frame_Shift_Ins	-	C	p.H939fs
LIHC	TCGA-BC-A112-01	ARFGAP1	ENST00000370275.4,ENST00000520485.1,ENST00000522959.1,ENST00000370283.4,ENST00000524192.2,ENST00000522403.2,ENST00000353546.3,ENST00000519273.2,ENST00000519531.1,ENST00000523114.1,ENST00000550188.1	chr20	61906928:61906992:61907442:61907552:61907831:61907899,	61907443	61907552	61907476	61907477	Frame_Shift_Ins	-	G	p.G32fs
LIHC	TCGA-BC-A112-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34889663:34889915:34892670:34892869:34893212:34893322,	34892671	34892869	34892757	34892758	Frame_Shift_Ins	-	A	p.L539fs
LIHC	TCGA-BC-A112-01	TTC3	ENST00000438055.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38524192:38524329:38525250:38525577:38528956:38529208,	38525251	38525577	38525475	38525476	Frame_Shift_Ins	-	A	p.K880fs
LIHC	TCGA-BC-A112-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46596321	46596322	Frame_Shift_Ins	-	C	p.R236fs
LIHC	TCGA-BC-A112-01	YBEY	ENST00000468924.1	chr21	47706297:47706329:47706783:47707037:47711247:47711376,	47706784	47707037	47707017	47707018	Frame_Shift_Ins	-	T	p.F64fs
LIHC	TCGA-BC-A112-01	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819723	20819724	Frame_Shift_Ins	-	T	p.I178fs
LIHC	TCGA-BC-A112-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21088330:21088482:21088682:21088841:21096515:21096643,	21088683	21088841	21088724	21088725	Frame_Shift_Ins	-	T	p.NL1286fs
LIHC	TCGA-BC-A112-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384034	21384035	Frame_Shift_Ins	-	C	p.S530fs
LIHC	TCGA-BC-A112-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384513	21384514	Frame_Shift_Ins	-	C	p.D370fs
LIHC	TCGA-BC-A112-01	PPM1F	ENST00000407142.1,ENST00000538191.1,ENST00000397495.4,ENST00000263212.5	chr22	22279941:22280035:22285519:22285663:22287762:22287951,	22285520	22285663	22285574	22285575	Frame_Shift_Ins	-	A	p.C111fs
LIHC	TCGA-BC-A112-01	PPM1F	ENST00000397495.4,ENST00000263212.5	chr22	22288395:22288598:22293903:22294052:22300214:22300480,	22293904	22294052	22294043	22294044	Frame_Shift_Ins	-	G	p.P72fs
LIHC	TCGA-BC-A112-01	GSTT2B	ENST00000290765.4	chr22	24299805:24300119:24300471:24300645:24300737:24300888,	24300472	24300645	24300539	24300540	Frame_Shift_Ins	-	C	p.Q153fs
LIHC	TCGA-BC-A112-01	GSTT2B	ENST00000404172.3	chr22	24299805:24300119:24300513:24300645:24300737:24300888,	24300514	24300645	24300539	24300540	Frame_Shift_Ins	-	C	p.Q153fs
LIHC	TCGA-BC-A112-01	GSTT2B	ENST00000290765.4	chr22	24299805:24300119:24300471:24300645:24300737:24300888,	24300472	24300645	24300633	24300634	Frame_Shift_Ins	-	T	p.H122fs
LIHC	TCGA-BC-A112-01	GSTT2B	ENST00000404172.3	chr22	24299805:24300119:24300513:24300645:24300737:24300888,	24300514	24300645	24300633	24300634	Frame_Shift_Ins	-	T	p.H122fs
LIHC	TCGA-BC-A112-01	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000343706.4,ENST00000404234.3,ENST00000403121.1	chr22	26736401:26736598:26743684:26743879:26761337:26761532,26736401:26736598:26743684:26743879:26747017:26747209,	26743685	26743879	26743737	26743738	Frame_Shift_Ins	-	A	p.N756fs
LIHC	TCGA-BC-A112-01	ASCC2	ENST00000495967.1	chr22	30218340:30218453:30221075:30221246:30234166:30234217,	30221076	30221246	30221114	30221115	Frame_Shift_Ins	-	A	p.H125fs
LIHC	TCGA-BC-A112-01	ASCC2	ENST00000495967.1	chr22	30218340:30218453:30221075:30221246:30234166:30234217,	30221076	30221246	30221170	30221171	Frame_Shift_Ins	-	C	p.G106fs
LIHC	TCGA-BC-A112-01	POLR2F	ENST00000483713.1,ENST00000488684.1	chr22	38349717:38349814:38352779:38352908:38355352:38355483,	38352780	38352908	38352883	38352884	Frame_Shift_Ins	-	C	p.P42fs
LIHC	TCGA-BC-A112-01	L3MBTL2	ENST00000481902.1	chr22	41605699:41605937:41609854:41610030:41612142:41612266,	41609855	41610030	41610000	41610001	Frame_Shift_Ins	-	A	p.E123fs
LIHC	TCGA-BC-A112-01	L3MBTL2	ENST00000479978.1,ENST00000450939.1,ENST00000452106.1,ENST00000216237.5,ENST00000466589.1,ENST00000489136.1	chr22	41605699:41605937:41609896:41610030:41612142:41612266,	41609897	41610030	41610000	41610001	Frame_Shift_Ins	-	A	p.E123fs
LIHC	TCGA-BC-A112-01	MOV10L1	ENST00000395858.3,ENST00000262794.5,ENST00000545383.1,ENST00000395852.1,ENST00000540615.1	chr22	50588043:50588143:50589163:50589328:50591473:50591647,	50589164	50589328	50589180	50589181	Frame_Shift_Ins	-	C	p.A915fs
LIHC	TCGA-BC-A112-01	MOV10L1	ENST00000262794.5,ENST00000545383.1,ENST00000395852.1	chr22	50598106:50598214:50599116:50599254:50599796:50600047,50598106:50598214:50599116:50599254:50599392:50599484,	50599117	50599254	50599235	50599236	Frame_Shift_Ins	-	C	p.T1148fs
LIHC	TCGA-BC-A112-01	TRABD	ENST00000395829.1,ENST00000395827.1,ENST00000463233.1,ENST00000380909.4,ENST00000303434.4	chr22	50633328:50633469:50635669:50635780:50635877:50636017,	50635670	50635780	50635745	50635746	Frame_Shift_Ins	-	C	p.P166fs
LIHC	TCGA-BC-A112-01	TUBGCP6	ENST00000439308.2	chr22	50658385:50658444:50658620:50660303:50660456:50660531,	50658621	50660303	50659351	50659352	Frame_Shift_Ins	-	C	p.E1146fs
LIHC	TCGA-BC-A112-01	TUBGCP6	ENST00000248846.5	chr22	50658385:50658444:50658679:50660303:50660456:50660531,	50658680	50660303	50659351	50659352	Frame_Shift_Ins	-	C	p.E1146fs
LIHC	TCGA-BC-A112-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7894067	7894068	Frame_Shift_Ins	-	T	p.NC31fs
LIHC	TCGA-BC-A112-01	EIF1AX	ENST00000379607.5,ENST00000379593.1	chrX	20150299:20150381:20152074:20152125:20153855:20153959,	20152075	20152125	20152085	20152086	Frame_Shift_Ins	-	G	p.R82fs
LIHC	TCGA-BC-A112-01	PDK3	ENST00000441463.2	chrX	24549773:24549887:24552045:24552185:24557250:24557954,	24552046	24552185	24552079	24552080	Frame_Shift_Ins	-	T	p.F371fs
LIHC	TCGA-BC-A112-01	RPGR	ENST00000339363.3	chrX	38135839:38136025:38146346:38147294:38150211:38150277,	38146347	38147294	38147061	38147062	Frame_Shift_Ins	-	A	p.S602fs
LIHC	TCGA-BC-A112-01	DDX3X	ENST00000441189.2,ENST00000399959.2,ENST00000478993.1,ENST00000542215.1	chrX	41196661:41196718:41198288:41198336:41200736:41200869,	41198289	41198336	41198300	41198301	Frame_Shift_Ins	-	T	p.S39fs
LIHC	TCGA-BC-A112-01	EFHC2	ENST00000343571.3,ENST00000420999.1	chrX	44007910:44008142:44023167:44023273:44035537:44035630,	44023168	44023273	44023266	44023267	Frame_Shift_Ins	-	T	p.Q684fs
LIHC	TCGA-BC-A112-01	ELK1	ENST00000376983.3,ENST00000247161.3,ENST00000592066.1	chrX	47496411:47496513:47497149:47497581:47498293:47498737,	47497150	47497581	47497405	47497406	Frame_Shift_Ins	-	G	p.P277fs
LIHC	TCGA-BC-A112-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50052937	50052938	Frame_Shift_Ins	-	A	p.K590fs
LIHC	TCGA-BC-A112-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000375695.2	chrX	51641380:51641423:51641676:51641739:51643277:51643392,	51641677	51641739	51641725	51641726	Frame_Shift_Ins	-	T	p.C667fs
LIHC	TCGA-BC-A112-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53222963:53223033:53223320:53223920:53224112:53224250,	53223321	53223920	53223898	53223899	Frame_Shift_Ins	-	C	p.T1087fs
LIHC	TCGA-BC-A112-01	HUWE1	ENST00000218328.8,ENST00000342160.3,ENST00000262854.6	chrX	53672262:53672415:53674310:53674517:53675154:53675253,	53674311	53674517	53674390	53674391	Frame_Shift_Ins	-	T	p.A91fs
LIHC	TCGA-BC-A112-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784120	54784121	Frame_Shift_Ins	-	C	p.T796fs
LIHC	TCGA-BC-A112-01	TRO	ENST00000319167.8,ENST00000445561.1,ENST00000375022.4,ENST00000173898.7	chrX	54948650:54948724:54949010:54950201:54950883:54950988,	54949011	54950201	54950009	54950010	Frame_Shift_Ins	-	A	p.G349fs
LIHC	TCGA-BC-A112-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76919037	76919038	Frame_Shift_Ins	-	T	p.T1318fs
LIHC	TCGA-BC-A112-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938229	76938230	Frame_Shift_Ins	-	T	p.N840fs
LIHC	TCGA-BC-A112-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938898	76938899	Frame_Shift_Ins	-	T	p.L617fs
LIHC	TCGA-BC-A112-01	HDX	ENST00000506585.2,ENST00000373177.2,ENST00000297977.5	chrX	83591808:83591888:83599257:83599465:83616473:83616620,	83599258	83599465	83599453	83599454	Frame_Shift_Ins	-	C	p.S489fs
LIHC	TCGA-BC-A112-01	RBM41	ENST00000203616.8,ENST00000495517.1	chrX	106313419:106313655:106331964:106332069:106356626:106356698,	106331965	106332069	106331992	106331993	Frame_Shift_Ins	-	T	p.S201fs
LIHC	TCGA-BC-A112-01	RBM41	ENST00000372487.1,ENST00000372479.3	chrX	106312539:106312632:106331665:106332069:106358581:106358684,	106331666	106332069	106331992	106331993	Frame_Shift_Ins	-	T	p.S201fs
LIHC	TCGA-BC-A112-01	ACSL4	ENST00000504980.1	chrX	108926097:108926125:108926364:108926781:108976367:108976442,108926097:108926125:108926364:108926781:108939372:108939425,	108926365	108926781	108926642	108926643	Frame_Shift_Ins	-	G	p.Y25fs
LIHC	TCGA-BC-A112-01	ACSL4	ENST00000469796.2	chrX	108926097:108926125:108926364:108926895:108976367:108976442,108926097:108926125:108926364:108926895:108939372:108939425,	108926365	108926895	108926642	108926643	Frame_Shift_Ins	-	G	p.Y25fs
LIHC	TCGA-BC-A112-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112066217	112066218	Frame_Shift_Ins	-	G	p.P46fs
LIHC	TCGA-BC-A112-01	SLC25A43	ENST00000493093.1,ENST00000217909.7	chrX	118544152:118544325:118585971:118586106:118586827:118586904,	118585972	118586106	118586060	118586061	Frame_Shift_Ins	-	G	p.R260fs
LIHC	TCGA-BC-A112-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128638710:128638779:128640056:128640188:128641917:128642073,	128640057	128640188	128640184	128640185	Frame_Shift_Ins	-	A	p.R324fs
LIHC	TCGA-BC-A112-01	HPRT1	ENST00000462974.1,ENST00000298556.7,ENST00000475720.1	chrX	133609210:133609394:133620494:133620560:133624217:133624235,	133620495	133620560	133620504	133620505	Frame_Shift_Ins	-	C	p.N110fs
LIHC	TCGA-BC-A112-01	RBMX	ENST00000464781.1,ENST00000565438.1,ENST00000568578.1,ENST00000419968.2,ENST00000562646.1,ENST00000570135.1,ENST00000320676.7	chrX	135957416:135957542:135957629:135957744:135958661:135958814,	135957630	135957744	135957692	135957693	Frame_Shift_Ins	-	G	p.P198fs
LIHC	TCGA-BC-A112-01	ATP11C	ENST00000485626.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138886629:138886758:138897036:138897144:138899021:138899102,	138897037	138897144	138897041	138897042	Frame_Shift_Ins	-	T	p.Q141fs
LIHC	TCGA-BC-A112-01	FMR1	ENST00000370470.1,ENST00000370471.3,ENST00000370475.4	chrX	147018984:147019119:147019617:147019680:147022094:147022156,	147019618	147019680	147019644	147019645	Frame_Shift_Ins	-	G	p.AG384fs
LIHC	TCGA-BC-A112-01	FLNA	ENST00000490936.1,ENST00000369850.3,ENST00000462590.1,ENST00000344736.4,ENST00000360319.4,ENST00000498491.1,ENST00000369856.3,ENST00000422373.1,ENST00000420627.1	chrX	153577289:153577404:153577729:153577933:153578016:153578226,	153577730	153577933	153577849	153577850	Frame_Shift_Ins	-	G	p.A2538fs
LIHC	TCGA-BC-A112-01	UTY	ENST00000538878.1,ENST00000331397.4,ENST00000382896.4,ENST00000540140.1,ENST00000362096.4,ENST00000545955.1,ENST00000329134.5	chrY	15438100:15438230:15447442:15448215:15466882:15467278,	15447443	15448215	15448058	15448059	Frame_Shift_Ins	-	C	p.C643fs
LIHC	TCGA-BC-A217-01	SAA2	ENST00000414546.2	chr11	18263685:18264366:18267456:18267595:18269467:18269562,18260769:18261516:18267456:18267595:18269467:18269562,	18267457	18267595	18267513	18267513	Frame_Shift_Del	C	-	p.G58fs
LIHC	TCGA-BC-A3KF-01	HNF4G	ENST00000354370.1	chr8	76402323:76402443:76456045:76456214:76459821:76459916,	76456046	76456214	76456117	76456118	Frame_Shift_Ins	-	ACAGAGC	p.Q54fs
LIHC	TCGA-BC-A3KG-01	UBE2J2	ENST00000473215.1,ENST00000400929.2,ENST00000466752.1,ENST00000435198.1,ENST00000360466.2,ENST00000450390.2,ENST00000349431.6,ENST00000339385.6,ENST00000348298.7,ENST00000400930.4,ENST00000471154.1,ENST00000347370.2	chr1	1192501:1192510:1192587:1192690:1198725:1198766,	1192588	1192690	1192650	1192650	Frame_Shift_Del	A	-	p.F19fs
LIHC	TCGA-BC-A3KG-01	CDK11A	ENST00000460465.1,ENST00000378633.1,ENST00000357760.2,ENST00000378635.3,ENST00000404249.3,ENST00000479362.1,ENST00000509982.1,ENST00000358779.5	chr1	1650796:1650894:1653034:1653150:1654146:1654270,	1653035	1653150	1653065	1653065	Frame_Shift_Del	G	-	p.P32fs
LIHC	TCGA-BC-A3KG-01	VPS13D	ENST00000011700.6	chr1	12395761:12395884:12398287:12398362:12401836:12401942,12395761:12395884:12398287:12398362:12401839:12401942,	12398288	12398362	12398335	12398335	Frame_Shift_Del	A	-	p.N2867fs
LIHC	TCGA-BC-A3KG-01	PRDM2	ENST00000376048.5,ENST00000235372.7,ENST00000311066.5	chr1	14057512:14057612:14068499:14068652:14075855:14075958,14059273:14059377:14068499:14068652:14075855:14075958,	14068500	14068652	14068514	14068514	Frame_Shift_Del	T	-	p.N82fs
LIHC	TCGA-BC-A3KG-01	PITHD1	ENST00000374524.1,ENST00000246151.4	chr1	24112164:24112269:24112804:24112913:24113764:24114722,	24112805	24112913	24112881	24112881	Frame_Shift_Del	T	-	p.F168fs
LIHC	TCGA-BC-A3KG-01	LCK	ENST00000355928.3,ENST00000476457.1,ENST00000495610.2,ENST00000469765.1,ENST00000482949.1	chr1	32716918:32716972:32739925:32740035:32740337:32740419,	32739926	32740035	32740029	32740029	Frame_Shift_Del	G	-	p.K33fs
LIHC	TCGA-BC-A3KG-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35855548:35855699:35857812:35857953:35858247:35858285,	35857813	35857953	35857862	35857862	Frame_Shift_Del	A	-	p.R879fs
LIHC	TCGA-BC-A3KG-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798463	39798463	Frame_Shift_Del	A	-	p.E2068fs
LIHC	TCGA-BC-A3KG-01	FOXJ3	ENST00000545068.1,ENST00000372573.1,ENST00000361776.1,ENST00000445886.1,ENST00000372572.1,ENST00000361346.1	chr1	42730785:42730860:42744018:42744343:42776720:42776781,	42744019	42744343	42744063	42744063	Frame_Shift_Del	A	-	p.C109fs
LIHC	TCGA-BC-A3KG-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46165741:46165862:46179917:46180138:46182566:46182689,	46179918	46180138	46180083	46180083	Frame_Shift_Del	A	-	p.F455fs
LIHC	TCGA-BC-A3KG-01	MAST2	ENST00000372009.2,ENST00000372008.2,ENST00000361297.2	chr1	46494439:46494605:46495137:46495239:46495502:46495625,	46495138	46495239	46495173	46495173	Frame_Shift_Del	C	-	p.P753fs
LIHC	TCGA-BC-A3KG-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000493793.1	chr1	51869100:51869204:51871576:51871780:51873806:51874004,	51871577	51871780	51871743	51871743	Frame_Shift_Del	T	-	p.N504fs
LIHC	TCGA-BC-A3KG-01	ZFYVE9	ENST00000371591.1,ENST00000287727.3,ENST00000357206.2	chr1	52759124:52759349:52761566:52761649:52769492:52769597,	52761567	52761649	52761596	52761596	Frame_Shift_Del	T	-	p.F1094fs
LIHC	TCGA-BC-A3KG-01	TTLL7	ENST00000480174.1,ENST00000260505.8,ENST00000472688.1	chr1	84335448:84335765:84348645:84348819:84356003:84356025,	84348646	84348819	84348689	84348689	Frame_Shift_Del	T	-	p.R834fs
LIHC	TCGA-BC-A3KG-01	DDAH1	ENST00000284031.8,ENST00000539042.1	chr1	85817188:85817262:85824430:85824530:85930425:85930823,	85824431	85824530	85824474	85824474	Frame_Shift_Del	T	-	p.K120fs
LIHC	TCGA-BC-A3KG-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90050223	90050223	Frame_Shift_Del	C	-	p.P672fs
LIHC	TCGA-BC-A3KG-01	SNX7	ENST00000306121.3,ENST00000529992.1	chr1	99164261:99164461:99167372:99167459:99225609:99226054,99164261:99164461:99167372:99167459:99203792:99203945,	99167373	99167459	99167382	99167382	Frame_Shift_Del	A	-	p.K286fs
LIHC	TCGA-BC-A3KG-01	PSMA5	ENST00000538610.1,ENST00000271308.4,ENST00000490870.1	chr1	109952549:109952636:109953632:109953735:109954498:109954557,	109953633	109953735	109953662	109953662	Frame_Shift_Del	G	-	p.Q178fs
LIHC	TCGA-BC-A3KG-01	NUDT17	ENST00000477878.1	chr1	145588609:145588635:145588871:145589055:145589235:145589409,	145588872	145589055	145588874	145588874	Frame_Shift_Del	G	-	p.P125fs
LIHC	TCGA-BC-A3KG-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5	chr1	150530420:150530625:150530948:150531125:150531437:150531641,	150530949	150531125	150530968	150530968	Frame_Shift_Del	G	-	p.R801fs
LIHC	TCGA-BC-A3KG-01	CRTC2	ENST00000368633.1,ENST00000303569.6,ENST00000461638.2	chr1	153921741:153921860:153923735:153924142:153924493:153924738,	153923736	153924142	153923873	153923873	Frame_Shift_Del	C	-	p.A423fs
LIHC	TCGA-BC-A3KG-01	CREB3L4	ENST00000468845.1	chr1	153941871:153941931:153945219:153945554:153945670:153945739,	153945220	153945554	153945532	153945532	Frame_Shift_Del	T	-	p.Y241fs
LIHC	TCGA-BC-A3KG-01	CREB3L4	ENST00000368603.1,ENST00000271889.4,ENST00000368607.3,ENST00000368600.3,ENST00000405694.3	chr1	153945219:153945312:153945447:153945554:153945670:153945739,	153945448	153945554	153945532	153945532	Frame_Shift_Del	T	-	p.Y241fs
LIHC	TCGA-BC-A3KG-01	SLC50A1	ENST00000475824.1,ENST00000488609.1,ENST00000368404.4	chr1	155108774:155108852:155110036:155110198:155110454:155110570,155109303:155109427:155110036:155110198:155110454:155110570,	155110037	155110198	155110177	155110177	Frame_Shift_Del	C	-	p.Y141fs
LIHC	TCGA-BC-A3KG-01	SLC50A1	ENST00000490770.1	chr1	155109303:155109427:155110054:155110198:155110454:155110570,	155110055	155110198	155110177	155110177	Frame_Shift_Del	C	-	p.Y141fs
LIHC	TCGA-BC-A3KG-01	MUC1	ENST00000337604.5,ENST00000338684.5,ENST00000438413.1,ENST00000368390.3,ENST00000368398.3,ENST00000457295.2,ENST00000468978.1,ENST00000462317.1,ENST00000462215.1,ENST00000368395.1,ENST00000368392.3	chr1	155159700:155159850:155159930:155160052:155160638:155160707,155159700:155159850:155159930:155160052:155160197:155160329,	155159931	155160052	155160023	155160023	Frame_Shift_Del	G	-	p.Q371fs
LIHC	TCGA-BC-A3KG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450058	155450058	Frame_Shift_Del	A	-	p.L868fs
LIHC	TCGA-BC-A3KG-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491256	155491256	Frame_Shift_Del	A	-	p.S19fs
LIHC	TCGA-BC-A3KG-01	MEF2D	ENST00000464356.2,ENST00000360595.3,ENST00000368240.2	chr1	156438571:156438812:156444899:156445029:156446803:156446885,	156444900	156445029	156444977	156444977	Frame_Shift_Del	G	-	p.P310fs
LIHC	TCGA-BC-A3KG-01	MEF2D	ENST00000493077.1,ENST00000464356.2,ENST00000360595.3,ENST00000368240.2,ENST00000348159.4,ENST00000340875.5,ENST00000353795.3	chr1	156446803:156446994:156449081:156449138:156449377:156449572,	156449082	156449138	156449123	156449123	Frame_Shift_Del	C	-	p.G208fs
LIHC	TCGA-BC-A3KG-01	USF1	ENST00000496363.1,ENST00000528768.1,ENST00000368020.1,ENST00000368021.3,ENST00000435396.1,ENST00000473969.2	chr1	161010603:161010662:161011113:161011201:161011440:161011511,	161011114	161011201	161011135	161011135	Frame_Shift_Del	G	-	p.P180fs
LIHC	TCGA-BC-A3KG-01	NUF2	ENST00000497990.1,ENST00000271452.3,ENST00000442820.1,ENST00000490881.1,ENST00000524800.1,ENST00000367900.3	chr1	163298635:163298697:163306540:163306638:163307809:163307883,	163306541	163306638	163306561	163306561	Frame_Shift_Del	T	-	p.F120fs
LIHC	TCGA-BC-A3KG-01	ALDH9A1	ENST00000471457.1	chr1	165652217:165652347:165664488:165664634:165667614:165667750,	165664489	165664634	165664598	165664598	Frame_Shift_Del	T	-	p.K73fs
LIHC	TCGA-BC-A3KG-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166819098	166819098	Frame_Shift_Del	C	-	p.P428fs
LIHC	TCGA-BC-A3KG-01	NMNAT2	ENST00000287713.6,ENST00000294868.4,ENST00000473046.1	chr1	183253129:183253174:183253844:183253925:183255796:183255923,	183253845	183253925	183253871	183253871	Frame_Shift_Del	G	-	p.P169fs
LIHC	TCGA-BC-A3KG-01	RNF2	ENST00000367510.3,ENST00000453650.1	chr1	185060710:185060871:185067203:185067476:185068922:185068925,185062192:185062408:185067203:185067476:185068922:185068925,	185067204	185067476	185067238	185067238	Frame_Shift_Del	G	-	p.G167fs
LIHC	TCGA-BC-A3KG-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277520	186277520	Frame_Shift_Del	A	-	p.E890fs
LIHC	TCGA-BC-A3KG-01	CFHR2	ENST00000367415.5,ENST00000367421.3	chr1	196912987:196913068:196919981:196920158:196927020:196927203,196918746:196918779:196919981:196920158:196927020:196927203,	196919982	196920158	196920140	196920140	Frame_Shift_Del	C	-	p.P138fs
LIHC	TCGA-BC-A3KG-01	CFHR2	ENST00000476712.2	chr1	196918746:196918779:196920029:196920158:196927020:196927203,	196920030	196920158	196920140	196920140	Frame_Shift_Del	C	-	p.P138fs
LIHC	TCGA-BC-A3KG-01	NEK7	ENST00000367385.4,ENST00000493790.1,ENST00000538004.1	chr1	198262074:198262169:198266256:198266370:198288541:198288652,	198266257	198266370	198266290	198266290	Frame_Shift_Del	A	-	p.K240fs
LIHC	TCGA-BC-A3KG-01	NR5A2	ENST00000367357.3,ENST00000367362.3,ENST00000236914.3,ENST00000544748.1	chr1	200012937:200013020:200014570:200014712:200017299:200017946,	200014571	200014712	200014574	200014574	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-BC-A3KG-01	IGFN1	ENST00000437879.2,ENST00000451870.2,ENST00000295591.8,ENST00000335211.4	chr1	201172865:201173034:201174209:201174482:201175210:201175262,	201174210	201174482	201174214	201174214	Frame_Shift_Del	C	-	p.I307fs
LIHC	TCGA-BC-A3KG-01	NFASC	ENST00000367171.4,ENST00000367170.4,ENST00000413225.1,ENST00000401399.1,ENST00000367172.4,ENST00000339876.6	chr1	204957791:204957934:204971723:204971876:204978684:204978816,204970297:204970414:204971723:204971876:204978684:204978816,	204971724	204971876	204971735	204971735	Frame_Shift_Del	A	-	p.K1158fs
LIHC	TCGA-BC-A3KG-01	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212506838:212506940:212515529:212515622:212519144:212519225,	212515530	212515622	212515571	212515571	Frame_Shift_Del	T	-	p.D174fs
LIHC	TCGA-BC-A3KG-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214816312	214816312	Frame_Shift_Del	C	-	p.A1544fs
LIHC	TCGA-BC-A3KG-01	TAF1A	ENST00000391883.2	chr1	222753100:222753232:222757469:222757639:222761784:222761907,222753100:222753214:222757469:222757639:222761784:222761907,222750786:222750985:222757469:222757639:222761784:222761907,	222757470	222757639	222757518	222757518	Frame_Shift_Del	A	-	p.F81fs
LIHC	TCGA-BC-A3KG-01	WDR26	ENST00000295024.6,ENST00000414423.2	chr1	224599128:224599267:224605961:224606118:224607219:224607317,	224605962	224606118	224606059	224606059	Frame_Shift_Del	C	-	p.A308fs
LIHC	TCGA-BC-A3KG-01	SNAP47	ENST00000366760.1	chr1	227923136:227923200:227946695:227947186:227954659:227954784,227916407:227916487:227946695:227947186:227954659:227954784,	227946696	227947186	227946851	227946851	Frame_Shift_Del	C	-	p.S263fs
LIHC	TCGA-BC-A3KG-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371335	240371335	Frame_Shift_Del	C	-	p.P1079fs
LIHC	TCGA-BC-A3KG-01	SDCCAG8	ENST00000355875.4,ENST00000366541.3,ENST00000343783.6	chr1	243579003:243579131:243581269:243581378:243589728:243589860,	243581270	243581378	243581369	243581369	Frame_Shift_Del	A	-	p.Q615fs
LIHC	TCGA-BC-A3KG-01	DTNB	ENST00000405222.1,ENST00000407038.3,ENST00000485845.1,ENST00000288642.8,ENST00000406818.3,ENST00000407661.3,ENST00000496972.2,ENST00000407186.1,ENST00000404103.3	chr2	25803589:25803695:25818954:25819109:25851039:25851253,25803589:25803695:25818954:25819109:25830104:25830162,	25818955	25819109	25818962	25818962	Frame_Shift_Del	G	-	p.P199fs
LIHC	TCGA-BC-A3KG-01	SLC30A6	ENST00000449777.1	chr2	32417991:32418022:32418957:32419052:32422412:32422461,32417986:32418022:32418957:32419052:32422775:32422853,	32418958	32419052	32418998	32418998	Frame_Shift_Del	A	-	p.N148fs
LIHC	TCGA-BC-A3KG-01	STRN	ENST00000379213.2,ENST00000263918.4	chr2	37075471:37076768:37076856:37076943:37078142:37078250,	37076857	37076943	37076899	37076899	Frame_Shift_Del	T	-	p.S711fs
LIHC	TCGA-BC-A3KG-01	VPS54	ENST00000354504.3,ENST00000409558.4,ENST00000272322.4	chr2	64139673:64139795:64140356:64140444:64141315:64141421,	64140357	64140444	64140426	64140426	Frame_Shift_Del	A	-	p.C632fs
LIHC	TCGA-BC-A3KG-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049613	69049613	Frame_Shift_Del	A	-	p.K447fs
LIHC	TCGA-BC-A3KG-01	STAMBP	ENST00000424659.1	chr2	74056093:74056123:74057971:74058186:74071939:74072015,74056157:74056197:74057971:74058186:74071939:74072015,	74057972	74058186	74058139	74058139	Frame_Shift_Del	G	-	p.E53fs
LIHC	TCGA-BC-A3KG-01	CTNNA2	ENST00000402739.4	chr2	80835308:80835443:80846209:80846353:80874709:80874997,	80846210	80846353	80846327	80846327	Frame_Shift_Del	G	-	p.G850fs
LIHC	TCGA-BC-A3KG-01	MRPL35	ENST00000409180.1,ENST00000254644.8,ENST00000337109.4	chr2	86433228:86433418:86434305:86434450:86437602:86437736,	86434306	86434450	86434434	86434434	Frame_Shift_Del	T	-	p.L121fs
LIHC	TCGA-BC-A3KG-01	TSGA10	ENST00000409564.2	chr2	99634998:99635103:99636742:99636945:99651692:99651902,99634998:99635103:99636742:99636945:99681401:99681587,	99636743	99636945	99636912	99636912	Frame_Shift_Del	T	-	p.I550fs
LIHC	TCGA-BC-A3KG-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107459971	107459971	Frame_Shift_Del	C	-	p.E155fs
LIHC	TCGA-BC-A3KG-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000461128.1,ENST00000443124.1,ENST00000263713.5,ENST00000489017.1	chr2	120849207:120849237:120850824:120850852:120857819:120857862,	120850825	120850852	120850839	120850839	Frame_Shift_Del	C	-	p.P389fs
LIHC	TCGA-BC-A3KG-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321024	152321024	Frame_Shift_Del	T	-	p.F1664fs
LIHC	TCGA-BC-A3KG-01	DAPL1	ENST00000409042.1	chr2	159651828:159651942:159660793:159660881:159663566:159663627,	159660794	159660881	159660815	159660815	Frame_Shift_Del	T	-	p.I27fs
LIHC	TCGA-BC-A3KG-01	DPP4	ENST00000360534.3,ENST00000434918.2	chr2	162849792:162849894:162851470:162851544:162851809:162851882,	162851471	162851544	162851476	162851476	Frame_Shift_Del	C	-	p.A732fs
LIHC	TCGA-BC-A3KG-01	SCN1A	ENST00000423058.2,ENST00000303395.4,ENST00000375405.3,ENST00000409050.1	chr2	166895932:166896106:166897740:166897979:166898801:166898934,	166897741	166897979	166897888	166897888	Frame_Shift_Del	T	-	p.K756fs
LIHC	TCGA-BC-A3KG-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141267	167141267	Frame_Shift_Del	A	-	p.F558fs
LIHC	TCGA-BC-A3KG-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141267	167141267	Frame_Shift_Del	A	-	p.F558fs
LIHC	TCGA-BC-A3KG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104922	168104922	Frame_Shift_Del	T	-	p.S2340fs
LIHC	TCGA-BC-A3KG-01	FASTKD2	ENST00000236980.6,ENST00000402774.3,ENST00000403094.3,ENST00000487777.1	chr2	207636904:207637044:207638948:207639121:207651456:207651623,	207638949	207639121	207638999	207638999	Frame_Shift_Del	T	-	p.G435fs
LIHC	TCGA-BC-A3KG-01	KANSL1L	ENST00000281772.9	chr2	210894526:210894642:210896144:210896270:210905143:210905251,	210896145	210896270	210896211	210896211	Frame_Shift_Del	T	-	p.R697fs
LIHC	TCGA-BC-A3KG-01	TNS1	ENST00000479185.1	chr2	218713606:218713810:218745620:218747134:218749757:218749887,	218745621	218747134	218747075	218747075	Frame_Shift_Del	T	-	p.I311fs
LIHC	TCGA-BC-A3KG-01	ARMC9	ENST00000349938.4,ENST00000486787.1,ENST00000428662.1,ENST00000483477.1	chr2	232160910:232160966:232196504:232196609:232209686:232209802,	232196505	232196609	232196593	232196593	Frame_Shift_Del	C	-	p.T622fs
LIHC	TCGA-BC-A3KG-01	INPP5D	ENST00000359570.5,ENST00000415617.1,ENST00000455936.2,ENST00000435188.1,ENST00000450745.1,ENST00000445964.1	chr2	234106740:234107022:234112771:234113363:234115351:234115598,	234112772	234113363	234113151	234113151	Frame_Shift_Del	A	-	p.1107fs
LIHC	TCGA-BC-A3KG-01	PASK	ENST00000358649.4,ENST00000403638.3	chr2	242078166:242078209:242082251:242082489:242088828:242088850,242079988:242080168:242082251:242082489:242088828:242088850,	242082252	242082489	242082337	242082337	Frame_Shift_Del	G	-	p.P37fs
LIHC	TCGA-BC-A3KG-01	RAF1	ENST00000251849.4,ENST00000534997.1,ENST00000542177.1,ENST00000471449.1,ENST00000423275.1,ENST00000442415.2,ENST00000432427.2	chr3	12625844:12626156:12626345:12626480:12626620:12626752,	12626346	12626480	12626352	12626352	Frame_Shift_Del	A	-	p.F599fs
LIHC	TCGA-BC-A3KG-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612210	13612210	Frame_Shift_Del	C	-	p.P119fs
LIHC	TCGA-BC-A3KG-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612646	13612646	Frame_Shift_Del	C	-	p.A264fs
LIHC	TCGA-BC-A3KG-01	OXNAD1	ENST00000544043.1,ENST00000606098.1,ENST00000285083.5,ENST00000435829.2,ENST00000605932.1,ENST00000442255.1,ENST00000452581.1	chr3	16327848:16327955:16336362:16336504:16343132:16343293,	16336363	16336504	16336497	16336497	Frame_Shift_Del	A	-	p.H142fs
LIHC	TCGA-BC-A3KG-01	ARPP21	ENST00000427590.1	chr3	35732416:35732497:35756930:35756968:35763096:35763123,	35756931	35756968	35756953	35756953	Frame_Shift_Del	T	-	p.L307fs
LIHC	TCGA-BC-A3KG-01	SCN5A	ENST00000413689.1,ENST00000455624.2,ENST00000425664.1,ENST00000451551.2,ENST00000414099.2,ENST00000450102.2	chr3	38655465:38655557:38662333:38662462:38663890:38663980,	38662334	38662462	38662370	38662370	Frame_Shift_Del	G	-	p.P192fs
LIHC	TCGA-BC-A3KG-01	ANO10	ENST00000414522.2,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43616300:43616356:43618183:43618753:43621844:43621964,	43618184	43618753	43618438	43618438	Frame_Shift_Del	G	-	p.P303fs
LIHC	TCGA-BC-A3KG-01	RPL29	ENST00000481629.1,ENST00000480306.1	chr3	52029101:52029122:52029440:52029485:52029872:52029897,	52029441	52029485	52029461	52029461	Frame_Shift_Del	T	-	p.N6fs
LIHC	TCGA-BC-A3KG-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000488988.1	chr3	52431722:52431893:52432047:52432178:52432865:52433152,	52432048	52432178	52432125	52432125	Frame_Shift_Del	C	-	p.Y4012fs
LIHC	TCGA-BC-A3KG-01	GXYLT2	ENST00000389617.4	chr3	72971354:72971486:73004248:73004500:73006379:73006503,	73004249	73004500	73004253	73004253	Frame_Shift_Del	T	-	p.I202fs
LIHC	TCGA-BC-A3KG-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105470305:105470462:105495239:105495386:105572257:105572508,	105495240	105495386	105495371	105495371	Frame_Shift_Del	T	-	p.K145fs
LIHC	TCGA-BC-A3KG-01	DTX3L	ENST00000296161.4	chr3	122284705:122284917:122287335:122288871:122289301:122289382,	122287336	122288871	122287537	122287537	Frame_Shift_Del	T	-	p.F201fs
LIHC	TCGA-BC-A3KG-01	CCDC14	ENST00000438440.2,ENST00000488653.2,ENST00000433542.2,ENST00000409697.3	chr3	123674923:123674962:123675201:123675274:123675586:123675642,	123675202	123675274	123675219	123675219	Frame_Shift_Del	A	-	p.S96fs
LIHC	TCGA-BC-A3KG-01	CCDC14	ENST00000495381.1	chr3	123667792:123667979:123674689:123675642:123679990:123680055,	123674690	123675642	123675219	123675219	Frame_Shift_Del	A	-	p.S96fs
LIHC	TCGA-BC-A3KG-01	COPB2	ENST00000507777.1,ENST00000333188.5	chr3	139079922:139080137:139081248:139081359:139085409:139085617,	139081249	139081359	139081278	139081278	Frame_Shift_Del	T	-	p.I656fs
LIHC	TCGA-BC-A3KG-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000513291.1	chr3	142178068:142178225:142180781:142180932:142183938:142184082,	142180782	142180932	142180843	142180843	Frame_Shift_Del	A	-	p.I2377fs
LIHC	TCGA-BC-A3KG-01	TM4SF4	ENST00000463068.1,ENST00000305354.4	chr3	149193609:149193699:149205405:149205542:149216508:149216698,	149205406	149205542	149205444	149205444	Frame_Shift_Del	G	-	p.L101fs
LIHC	TCGA-BC-A3KG-01	SERPINI2	ENST00000467583.1	chr3	167183422:167183461:167184842:167185028:167189375:167189627,	167184843	167185028	167184901	167184901	Frame_Shift_Del	A	-	p.F140fs
LIHC	TCGA-BC-A3KG-01	SERPINI2	ENST00000471111.1,ENST00000466903.1,ENST00000476257.1,ENST00000461846.1,ENST00000264677.4	chr3	167183422:167183461:167184842:167185073:167189375:167189627,	167184843	167185073	167184901	167184901	Frame_Shift_Del	A	-	p.F140fs
LIHC	TCGA-BC-A3KG-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000475273.2,ENST00000356327.5,ENST00000440204.1,ENST00000342215.6,ENST00000498278.1	chr3	171443807:171443866:171451233:171451299:171452654:171452760,	171451234	171451299	171451258	171451258	Frame_Shift_Del	G	-	p.P194fs
LIHC	TCGA-BC-A3KG-01	KLHL24	ENST00000242810.6,ENST00000454652.2	chr3	183361267:183361330:183368083:183369064:183381245:183381430,	183368084	183369064	183368915	183368915	Frame_Shift_Del	C	-	p.L257fs
LIHC	TCGA-BC-A3KG-01	OPA1	ENST00000392438.3,ENST00000361150.2,ENST00000361715.2,ENST00000361908.3,ENST00000361510.2,ENST00000361828.2	chr3	193364853:193364969:193365858:193365923:193366583:193366660,	193365859	193365923	193365886	193365886	Frame_Shift_Del	G	-	p.W633fs
LIHC	TCGA-BC-A3KG-01	POLN	ENST00000511885.2,ENST00000382865.1,ENST00000515357.1	chr4	2181034:2181192:2194930:2195043:2200250:2200444,	2194931	2195043	2195031	2195031	Frame_Shift_Del	A	-	p.F307fs
LIHC	TCGA-BC-A3KG-01	ACOX3	ENST00000503233.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8407681:8407770:8411938:8412082:8416018:8416108,	8411939	8412082	8412063	8412063	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-BC-A3KG-01	PCDH7	ENST00000543491.1	chr4	30726062:30726218:30921774:30921991:31144094:31144353,	30921775	30921991	30921917	30921917	Frame_Shift_Del	T	-	p.L1106fs
LIHC	TCGA-BC-A3KG-01	PCDH7	ENST00000511884.2	chr4	30726062:30726218:30921774:30921967:31144094:31144353,	30921775	30921967	30921917	30921917	Frame_Shift_Del	T	-	p.L1106fs
LIHC	TCGA-BC-A3KG-01	FAM114A1	ENST00000358869.2	chr4	38870086:38870167:38879691:38880047:38893363:38893416,	38879692	38880047	38879840	38879840	Frame_Shift_Del	C	-	p.D47fs
LIHC	TCGA-BC-A3KG-01	OCIAD1	ENST00000512981.1,ENST00000505922.2,ENST00000503016.1,ENST00000512236.1,ENST00000444354.2,ENST00000511102.1,ENST00000510824.1,ENST00000508293.1,ENST00000506801.1,ENST00000396448.2,ENST00000425583.2,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000509246.1,ENST00000381473.3	chr4	48850415:48850463:48851963:48852099:48853822:48853916,	48851964	48852099	48851977	48851977	Frame_Shift_Del	G	-	p.M85fs
LIHC	TCGA-BC-A3KG-01	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	49034582:49034732:49040052:49040197:49046802:49046864,	49040053	49040197	49040092	49040092	Frame_Shift_Del	A	-	p.S566fs
LIHC	TCGA-BC-A3KG-01	TMEM165	ENST00000381334.5	chr4	56269409:56269505:56277780:56278006:56283238:56283412,56262417:56262563:56277780:56278006:56283238:56283412,	56277781	56278006	56277881	56277881	Frame_Shift_Del	T	-	p.V103fs
LIHC	TCGA-BC-A3KG-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73956383:73958017:73959795:73959945:73962833:73962989,	73959796	73959945	73959898	73959898	Frame_Shift_Del	C	-	p.G1742fs
LIHC	TCGA-BC-A3KG-01	EGF	ENST00000503392.1,ENST00000265171.5	chr4	110834396:110834618:110862101:110862301:110864409:110864591,	110862102	110862301	110862131	110862131	Frame_Shift_Del	G	-	p.G53fs
LIHC	TCGA-BC-A3KG-01	EGF	ENST00000503392.1,ENST00000265171.5,ENST00000509996.1,ENST00000509793.1	chr4	110915888:110916036:110920834:110921002:110925660:110925778,	110920835	110921002	110920984	110920984	Frame_Shift_Del	G	-	p.W1052fs
LIHC	TCGA-BC-A3KG-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144136006	144136006	Frame_Shift_Del	C	-	p.N959fs
LIHC	TCGA-BC-A3KG-01	DROSHA	ENST00000344624.3,ENST00000511367.2	chr5	31515100:31515326:31515560:31515671:31526185:31526397,31515100:31515326:31515560:31515671:31521229:31521320,	31515561	31515671	31515582	31515582	Frame_Shift_Del	G	-	p.P347fs
LIHC	TCGA-BC-A3KG-01	SKP2	ENST00000546211.1,ENST00000509692.1	chr5	36163746:36163858:36166620:36166764:36168414:36168549,36153032:36153144:36166620:36166764:36170445:36170486,	36166621	36166764	36166672	36166672	Frame_Shift_Del	C	-	p.H148fs
LIHC	TCGA-BC-A3KG-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466534	65466534	Frame_Shift_Del	A	-	p.K415fs
LIHC	TCGA-BC-A3KG-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000512785.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000354312.3,ENST00000521422.1,ENST00000345306.6	chr5	68670454:68670538:68677727:68677884:68680623:68680760,	68677728	68677884	68677784	68677784	Frame_Shift_Del	A	-	p.L147fs
LIHC	TCGA-BC-A3KG-01	AGGF1	ENST00000312916.7	chr5	76342171:76342502:76343985:76344097:76344760:76344812,	76343986	76344097	76344034	76344034	Frame_Shift_Del	C	-	p.S417fs
LIHC	TCGA-BC-A3KG-01	PDE8B	ENST00000340978.3,ENST00000333194.4,ENST00000505283.1,ENST00000342343.4,ENST00000346042.3,ENST00000264917.5	chr5	76707500:76707546:76707924:76708060:76708935:76709134,	76707925	76708060	76708032	76708032	Frame_Shift_Del	T	-	p.F562fs
LIHC	TCGA-BC-A3KG-01	CHD1	ENST00000512844.1	chr5	98194667:98194719:98195675:98195772:98199111:98199290,98194667:98194719:98195675:98195772:98204198:98204243,	98195676	98195772	98195707	98195707	Frame_Shift_Del	T	-	p.K1498fs
LIHC	TCGA-BC-A3KG-01	EFNA5	ENST00000333274.6,ENST00000510359.1	chr5	106716938:106717077:106722935:106723016:106723406:106723472,	106722936	106723016	106722953	106722953	Frame_Shift_Del	T	-	p.N183fs
LIHC	TCGA-BC-A3KG-01	TRPC7	ENST00000502753.2	chr5	135610360:135610525:135651284:135651467:135692295:135693073,135601907:135602124:135651284:135651467:135692295:135693073,	135651285	135651467	135651421	135651421	Frame_Shift_Del	C	-	p.G276fs
LIHC	TCGA-BC-A3KG-01	SRA1	ENST00000523259.1	chr5	139930425:139930496:139930645:139931769:139936731:139936857,	139930646	139931769	139931572	139931572	Frame_Shift_Del	T	-	p.T129fs
LIHC	TCGA-BC-A3KG-01	SRA1	ENST00000602775.1,ENST00000520427.1,ENST00000336283.6	chr5	139930645:139930754:139931566:139931769:139936731:139936857,	139931567	139931769	139931572	139931572	Frame_Shift_Del	T	-	p.T129fs
LIHC	TCGA-BC-A3KG-01	DCTN4	ENST00000446090.2	chr5	150133040:150133219:150135978:150136049:150138420:150138582,	150135979	150136049	150136029	150136029	Frame_Shift_Del	G	-	p.P52fs
LIHC	TCGA-BC-A3KG-01	GRK6	ENST00000393576.3,ENST00000528793.1,ENST00000515666.1,ENST00000355472.5,ENST00000355958.5	chr5	176863073:176863282:176863393:176863531:176867700:176867838,	176863394	176863531	176863423	176863423	Frame_Shift_Del	G	-	p.L432fs
LIHC	TCGA-BC-A3KG-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000502673.1,ENST00000512607.2,ENST00000452673.2	chr5	179143105:179143295:179146668:179146782:179147404:179147495,	179146669	179146782	179146757	179146757	Frame_Shift_Del	C	-	p.P334fs
LIHC	TCGA-BC-A3KG-01	RNF130	ENST00000520911.1,ENST00000521389.1	chr5	179382479:179382669:179390470:179390564:179393805:179394010,	179390471	179390564	179390532	179390532	Frame_Shift_Del	G	-	p.L395fs
LIHC	TCGA-BC-A3KG-01	OFCC1	ENST00000460066.1,ENST00000316020.6,ENST00000491508.1,ENST00000466385.1,ENST00000460363.2,ENST00000492094.2,ENST00000472329.1	chr6	9933002:9933179:9933474:9933541:9939521:9939552,	9933475	9933541	9933514	9933514	Frame_Shift_Del	T	-	p.T82fs
LIHC	TCGA-BC-A3KG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121872	12121872	Frame_Shift_Del	G	-	p.R615fs
LIHC	TCGA-BC-A3KG-01	MRS2	ENST00000274747.7,ENST00000378353.1,ENST00000483634.1,ENST00000443868.2,ENST00000535061.1,ENST00000378386.3	chr6	24412513:24412623:24415260:24415391:24416624:24416741,	24415261	24415391	24415370	24415370	Frame_Shift_Del	T	-	p.I233fs
LIHC	TCGA-BC-A3KG-01	MRS2	ENST00000543597.1	chr6	24412513:24412623:24415243:24415391:24416624:24416741,	24415244	24415391	24415370	24415370	Frame_Shift_Del	T	-	p.I233fs
LIHC	TCGA-BC-A3KG-01	SLC17A1	ENST00000377886.2,ENST00000427328.1,ENST00000244527.4	chr6	25783353:25783446:25799010:25799147:25801117:25801208,	25799011	25799147	25799054	25799054	Frame_Shift_Del	T	-	p.I455fs
LIHC	TCGA-BC-A3KG-01	TRIM26	ENST00000453195.1,ENST00000454678.2,ENST00000437089.1	chr6	30157789:30157812:30164292:30164523:30166205:30166301,	30164293	30164523	30164446	30164446	Frame_Shift_Del	T	-	p.E204fs
LIHC	TCGA-BC-A3KG-01	ABCF1	ENST00000475993.1,ENST00000376545.3,ENST00000326195.8	chr6	30551581:30551667:30551968:30552108:30552194:30552343,	30551969	30552108	30552060	30552060	Frame_Shift_Del	G	-	p.Q398fs
LIHC	TCGA-BC-A3KG-01	GPSM3	ENST00000375043.3	chr6	32159924:32160027:32160248:32160307:32160817:32160901,	32160249	32160307	32160260	32160260	Frame_Shift_Del	C	-	p.D11fs
LIHC	TCGA-BC-A3KG-01	NOTCH4	ENST00000375023.3	chr6	32169188:32169277:32169852:32170376:32171546:32171659,	32169853	32170376	32170147	32170147	Frame_Shift_Del	C	-	p.G1154fs
LIHC	TCGA-BC-A3KG-01	ZNF76	ENST00000479226.1,ENST00000440666.2,ENST00000373953.3	chr6	35260657:35260821:35261527:35261692:35262232:35262329,	35261528	35261692	35261538	35261538	Frame_Shift_Del	C	-	p.S447fs
LIHC	TCGA-BC-A3KG-01	SRSF3	ENST00000373715.6	chr6	36564537:36564745:36566625:36566760:36568928:36568967,	36566626	36566760	36566670	36566670	Frame_Shift_Del	A	-	p.E84fs
LIHC	TCGA-BC-A3KG-01	SRSF3	ENST00000373715.6,ENST00000477442.2	chr6	36568928:36568967:36569484:36569571:36569738:36569817,	36569485	36569571	36569490	36569490	Frame_Shift_Del	T	-	p.L129fs
LIHC	TCGA-BC-A3KG-01	MOCS1	ENST00000487924.1	chr6	39893460:39893589:39894922:39895194:39902033:39902160,	39894923	39895194	39895168	39895168	Frame_Shift_Del	C	-	p.L50fs
LIHC	TCGA-BC-A3KG-01	MOCS1	ENST00000308559.7,ENST00000340692.5,ENST00000373188.2	chr6	39893460:39893589:39895067:39895194:39902033:39902160,	39895068	39895194	39895168	39895168	Frame_Shift_Del	C	-	p.L50fs
LIHC	TCGA-BC-A3KG-01	XPO5	ENST00000496341.2,ENST00000265351.7,ENST00000424378.2	chr6	43519060:43519190:43521109:43521240:43523572:43523701,	43521110	43521240	43521153	43521153	Frame_Shift_Del	A	-	p.L510fs
LIHC	TCGA-BC-A3KG-01	GSTA4	ENST00000477599.1	chr6	52850329:52850381:52852154:52852206:52858954:52859059,52849261:52849403:52852154:52852206:52858954:52859055,	52852155	52852206	52852204	52852204	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-BC-A3KG-01	LRRC1	ENST00000370888.1	chr6	53778651:53778767:53784295:53784468:53785422:53785546,	53784296	53784468	53784418	53784418	Frame_Shift_Del	T	-	p.I410fs
LIHC	TCGA-BC-A3KG-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394755	64394755	Frame_Shift_Del	A	-	p.K378fs
LIHC	TCGA-BC-A3KG-01	RIMS1	ENST00000518273.1	chr6	72975662:72975752:72984051:72984135:72993749:72993821,72975662:72975752:72984051:72984135:73001636:73001749,	72984052	72984135	72984109	72984109	Frame_Shift_Del	C	-	p.I1152fs
LIHC	TCGA-BC-A3KG-01	ARMC2	ENST00000392644.4,ENST00000368972.3	chr6	109197345:109197553:109215669:109215746:109220896:109220995,	109215670	109215746	109215740	109215740	Frame_Shift_Del	A	-	p.K248fs
LIHC	TCGA-BC-A3KG-01	CDK19	ENST00000323817.3,ENST00000368911.3,ENST00000413605.2	chr6	110935470:110935869:110942306:110942573:110943290:110943369,	110942307	110942573	110942509	110942509	Frame_Shift_Del	G	-	p.P393fs
LIHC	TCGA-BC-A3KG-01	GPRC6A	ENST00000310357.3	chr6	117121746:117121959:117127532:117128369:117130476:117130780,	117127533	117128369	117127753	117127753	Frame_Shift_Del	A	-	p.L372fs
LIHC	TCGA-BC-A3KG-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700423	149700423	Frame_Shift_Del	C	-	p.P458fs
LIHC	TCGA-BC-A3KG-01	PCMT1	ENST00000367384.2	chr6	150117550:150117636:150123335:150123505:150131751:150131937,	150123336	150123505	150123398	150123398	Frame_Shift_Del	C	-	p.N247fs
LIHC	TCGA-BC-A3KG-01	PCMT1	ENST00000367380.5,ENST00000544496.1,ENST00000464889.1	chr6	150117550:150117636:150123335:150123552:150131751:150131937,	150123336	150123552	150123398	150123398	Frame_Shift_Del	C	-	p.N247fs
LIHC	TCGA-BC-A3KG-01	MTHFD1L	ENST00000367321.3	chr6	151281410:151281551:151286104:151286173:151293082:151293194,	151286105	151286173	151286127	151286127	Frame_Shift_Del	T	-	p.V656fs
LIHC	TCGA-BC-A3KG-01	TIAM2	ENST00000528391.2,ENST00000461783.3,ENST00000318981.5,ENST00000529824.2,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1,ENST00000456877.2,ENST00000360366.4	chr6	155504448:155504634:155532337:155532441:155561663:155561843,	155532338	155532441	155532407	155532407	Frame_Shift_Del	T	-	p.V1045fs
LIHC	TCGA-BC-A3KG-01	TCP1	ENST00000538530.1	chr6	160206505:160206528:160206931:160207052:160208774:160208934,	160206932	160207052	160206967	160206967	Frame_Shift_Del	G	-	p.P114fs
LIHC	TCGA-BC-A3KG-01	TCP1	ENST00000420894.2,ENST00000545764.1,ENST00000539948.1,ENST00000392168.2,ENST00000321394.7,ENST00000537390.1	chr6	160206505:160206528:160206931:160207029:160208774:160208903,	160206932	160207029	160206967	160206967	Frame_Shift_Del	G	-	p.P114fs
LIHC	TCGA-BC-A3KG-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470722	161470722	Frame_Shift_Del	A	-	p.E473fs
LIHC	TCGA-BC-A3KG-01	SUN1	ENST00000433212.1,ENST00000456758.2,ENST00000405266.1,ENST00000429178.1,ENST00000389574.3,ENST00000413171.2,ENST00000413514.2,ENST00000452783.2,ENST00000475971.1,ENST00000401592.1,ENST00000425407.2	chr7	901016:901101:905588:905704:908985:909153,	905589	905704	905662	905662	Frame_Shift_Del	C	-	p.I835fs
LIHC	TCGA-BC-A3KG-01	FOXK1	ENST00000446823.1,ENST00000328914.4	chr7	4798681:4798848:4798941:4799226:4800694:4800919,	4798942	4799226	4799107	4799107	Frame_Shift_Del	G	-	p.R526fs
LIHC	TCGA-BC-A3KG-01	GLCCI1	ENST00000438949.1,ENST00000223145.5	chr7	8099725:8099878:8110550:8110761:8124526:8124647,	8110551	8110761	8110595	8110595	Frame_Shift_Del	T	-	p.H337fs
LIHC	TCGA-BC-A3KG-01	AVL9	ENST00000404479.1,ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32588458:32588530:32590945:32591035:32591840:32591862,	32590946	32591035	32590957	32590957	Frame_Shift_Del	T	-	p.G128fs
LIHC	TCGA-BC-A3KG-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76112356	76112356	Frame_Shift_Del	G	-	p.W267fs
LIHC	TCGA-BC-A3KG-01	SPAG11B	ENST00000297498.2	chr8	7308085:7308422:7308645:7308721:7309780:7309887,7308344:7308422:7308645:7308721:7320228:7320379,	7308646	7308721	7308690	7308690	Frame_Shift_Del	G	-	p.P82fs
LIHC	TCGA-BC-A3KG-01	TONSL	ENST00000409379.3,ENST00000497613.1	chr8	145660856:145660933:145661040:145661801:145661940:145662064,	145661041	145661801	145661634	145661634	Frame_Shift_Del	C	-	p.A728fs
LIHC	TCGA-BC-A3KG-01	CDC37L1	ENST00000381854.3,ENST00000381858.1	chr9	4684876:4685158:4688512:4688606:4697095:4697211,	4688513	4688606	4688558	4688558	Frame_Shift_Del	A	-	p.K154fs
LIHC	TCGA-BC-A3KG-01	FOCAD	ENST00000338382.6,ENST00000380249.1	chr9	20770030:20770237:20778679:20778767:20781725:20781928,	20778680	20778767	20778693	20778693	Frame_Shift_Del	A	-	p.E307fs
LIHC	TCGA-BC-A3KG-01	NPR2	ENST00000464810.1	chr9	35792405:35793072:35793894:35794100:35799614:35799728,	35793895	35794100	35794044	35794044	Frame_Shift_Del	C	-	p.P273fs
LIHC	TCGA-BC-A3KG-01	PGM5	ENST00000472639.1,ENST00000396396.1	chr9	71094333:71094469:71098780:71098964:71114142:71114201,	71098781	71098964	71098888	71098888	Frame_Shift_Del	G	-	p.S468fs
LIHC	TCGA-BC-A3KG-01	WNK2	ENST00000448039.1,ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96002038:96002258:96009824:96010116:96015164:96015364,	96009825	96010116	96009944	96009944	Frame_Shift_Del	G	-	p.E554fs
LIHC	TCGA-BC-A3KG-01	TXN	ENST00000374517.5	chr9	113007057:113007123:113013099:113013159:113013637:113013730,	113013100	113013159	113013156	113013156	Frame_Shift_Del	G	-	p.L45fs
LIHC	TCGA-BC-A3KG-01	BRD3	ENST00000473349.1	chr9	136899822:136899951:136901153:136901446:136906881:136906916,	136901154	136901446	136901283	136901283	Frame_Shift_Del	C	-	p.E603fs
LIHC	TCGA-BC-A3KG-01	PNPLA7	ENST00000406427.1,ENST00000371457.1,ENST00000434090.1,ENST00000277531.4,ENST00000469998.1	chr9	140356630:140356783:140357136:140357285:140357866:140357983,	140357137	140357285	140357274	140357274	Frame_Shift_Del	G	-	p.R1119fs
LIHC	TCGA-BC-A3KG-01	DPH7	ENST00000467768.1,ENST00000277540.2,ENST00000485189.1,ENST00000472113.1,ENST00000479650.1,ENST00000475100.1	chr9	140459548:140459606:140468659:140468832:140469203:140469295,	140468660	140468832	140468739	140468739	Frame_Shift_Del	T	-	p.K187fs
LIHC	TCGA-BC-A3KG-01	ARMC3	ENST00000409983.3	chr10	23295812:23295910:23297204:23297303:23297764:23297860,	23297205	23297303	23297253	23297253	Frame_Shift_Del	A	-	p.R626fs
LIHC	TCGA-BC-A3KG-01	ARMC4	ENST00000537576.1,ENST00000305242.5,ENST00000545014.1	chr10	28229491:28229734:28233150:28233360:28233744:28233891,	28233151	28233360	28233287	28233287	Frame_Shift_Del	C	-	p.G536fs
LIHC	TCGA-BC-A3KG-01	MAP3K8	ENST00000263056.1,ENST00000375321.1,ENST00000542547.1	chr10	30747012:30747165:30748183:30748430:30749634:30749765,	30748184	30748430	30748322	30748322	Frame_Shift_Del	A	-	p.N389fs
LIHC	TCGA-BC-A3KG-01	ZFAND4	ENST00000497028.1	chr10	46148431:46148507:46158989:46159290:46167697:46167722,46147413:46147481:46158989:46159290:46167719:46168210,	46158990	46159290	46159020	46159020	Frame_Shift_Del	A	-	p.S52fs
LIHC	TCGA-BC-A3KG-01	MCU	ENST00000536019.1,ENST00000604679.1,ENST00000604372.1,ENST00000605597.1,ENST00000373053.3	chr10	74620180:74620285:74628460:74628621:74631134:74631191,	74628461	74628621	74628566	74628566	Frame_Shift_Del	G	-	p.R152fs
LIHC	TCGA-BC-A3KG-01	USP54	ENST00000466048.2,ENST00000498143.1,ENST00000424265.1,ENST00000497106.1,ENST00000339859.4,ENST00000418501.1,ENST00000394811.2,ENST00000408019.1,ENST00000428547.1	chr10	75286404:75286538:75289437:75289669:75289900:75290169,	75289438	75289669	75289662	75289662	Frame_Shift_Del	T	-	p.E612fs
LIHC	TCGA-BC-A3KG-01	PKP3	ENST00000331563.2	chr11	399966:400141:400333:400451:400534:400705,	400334	400451	400399	400399	Frame_Shift_Del	C	-	p.A505fs
LIHC	TCGA-BC-A3KG-01	HPX	ENST00000533856.1,ENST00000533369.1,ENST00000525057.1,ENST00000265983.3	chr11	6459708:6459739:6461394:6461516:6461696:6461756,	6461395	6461516	6461444	6461444	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-BC-A3KG-01	PDE3B	ENST00000282096.4,ENST00000455098.2	chr11	14854267:14854379:14856527:14856641:14865372:14865572,	14856528	14856641	14856631	14856631	Frame_Shift_Del	A	-	p.G770fs
LIHC	TCGA-BC-A3KG-01	HPS5	ENST00000352460.3	chr11	18309439:18309560:18312988:18313566:18314445:18314523,18309439:18309560:18312988:18313566:18316566:18316716,	18312989	18313566	18313120	18313120	Frame_Shift_Del	G	-	p.P656fs
LIHC	TCGA-BC-A3KG-01	HPS5	ENST00000352460.3	chr11	18309439:18309560:18312988:18313566:18314445:18314523,18309439:18309560:18312988:18313566:18316566:18316716,	18312989	18313566	18313212	18313212	Frame_Shift_Del	T	-	p.E625fs
LIHC	TCGA-BC-A3KG-01	METTL15	ENST00000406787.3,ENST00000407364.3,ENST00000342303.5,ENST00000303459.6	chr11	28134864:28135151:28232608:28232745:28311752:28311944,	28232609	28232745	28232710	28232710	Frame_Shift_Del	T	-	p.A124fs
LIHC	TCGA-BC-A3KG-01	CD59	ENST00000533403.1,ENST00000395850.3	chr11	33738915:33739017:33743924:33744009:33757927:33757954,	33743925	33744009	33743967	33743967	Frame_Shift_Del	G	-	p.L9fs
LIHC	TCGA-BC-A3KG-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000402799.1,ENST00000311027.5,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47303931:47304167:47304363:47304520:47305728:47305832,	47304364	47304520	47304369	47304369	Frame_Shift_Del	T	-	p.F571fs
LIHC	TCGA-BC-A3KG-01	SLC39A13	ENST00000526614.1,ENST00000524928.1,ENST00000354884.4,ENST00000529740.1,ENST00000533076.1,ENST00000362021.4	chr11	47433896:47434018:47434950:47435058:47435147:47435225,	47434951	47435058	47434957	47434957	Frame_Shift_Del	A	-	p.N182fs
LIHC	TCGA-BC-A3KG-01	VWCE	ENST00000301770.6	chr11	61048264:61048707:61049257:61049386:61050260:61050377,61048264:61048707:61049257:61049386:61050264:61050377,	61049258	61049386	61049320	61049320	Frame_Shift_Del	C	-	p.G242fs
LIHC	TCGA-BC-A3KG-01	DPF2	ENST00000532052.1,ENST00000528416.1,ENST00000252268.4	chr11	65113211:65113274:65113400:65113529:65113717:65113830,	65113401	65113529	65113456	65113456	Frame_Shift_Del	G	-	p.L277fs
LIHC	TCGA-BC-A3KG-01	CPT1A	ENST00000538994.1	chr11	68552282:68552478:68560782:68560870:68562271:68562379,68553211:68553503:68560782:68560870:68562271:68562379,	68560783	68560870	68560797	68560797	Frame_Shift_Del	G	-	p.P318fs
LIHC	TCGA-BC-A3KG-01	XRRA1	ENST00000530562.1	chr11	74562132:74562248:74563033:74563127:74574025:74574066,74562132:74562248:74563033:74563127:74617283:74617397,74562132:74562248:74563033:74563127:74570202:74570328,74562132:74562248:74563033:74563127:74618189:74618266,	74563034	74563127	74563072	74563072	Frame_Shift_Del	A	-	p.F401fs
LIHC	TCGA-BC-A3KG-01	C11orf54	ENST00000527363.1	chr11	93474853:93474894:93480467:93480614:93483511:93483610,93478994:93479646:93480467:93480614:93483511:93483610,	93480468	93480614	93480580	93480580	Frame_Shift_Del	T	-	p.S7fs
LIHC	TCGA-BC-A3KG-01	C11orf54	ENST00000354421.3,ENST00000531650.1,ENST00000540113.1	chr11	93474853:93474894:93480462:93480614:93483511:93483610,	93480463	93480614	93480580	93480580	Frame_Shift_Del	T	-	p.S7fs
LIHC	TCGA-BC-A3KG-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107925601:107925682:107940822:107940916:107943058:107943189,	107940823	107940916	107940849	107940849	Frame_Shift_Del	G	-	p.L269fs
LIHC	TCGA-BC-A3KG-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107960218:107960350:107965117:107965241:107965538:107965714,	107965118	107965241	107965201	107965201	Frame_Shift_Del	T	-	p.A509fs
LIHC	TCGA-BC-A3KG-01	NPAT	ENST00000530859.1,ENST00000278612.8	chr11	108029519:108029746:108031606:108032741:108032846:108032892,	108031607	108032741	108032478	108032478	Frame_Shift_Del	T	-	p.N1113fs
LIHC	TCGA-BC-A3KG-01	KDELC2	ENST00000323468.5,ENST00000434945.2	chr11	108348333:108348438:108350027:108350222:108351906:108352103,	108350028	108350222	108350073	108350073	Frame_Shift_Del	A	-	p.I360fs
LIHC	TCGA-BC-A3KG-01	TMPRSS5	ENST00000536856.1,ENST00000539732.1,ENST00000538955.1,ENST00000540540.1,ENST00000299882.5,ENST00000545579.1	chr11	113565199:113565362:113566121:113566165:113567579:113567693,	113566122	113566165	113566137	113566137	Frame_Shift_Del	A	-	p.S203fs
LIHC	TCGA-BC-A3KG-01	ZW10	ENST00000200135.3	chr11	113607341:113607544:113608293:113608425:113608985:113609116,	113608294	113608425	113608376	113608376	Frame_Shift_Del	G	-	p.P645fs
LIHC	TCGA-BC-A3KG-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113685895:113686104:113688379:113688559:113694326:113694422,	113688380	113688559	113688536	113688536	Frame_Shift_Del	G	-	p.P436fs
LIHC	TCGA-BC-A3KG-01	POU2F3	ENST00000543440.2,ENST00000260264.4,ENST00000533620.1,ENST00000532638.1	chr11	120178187:120178324:120180133:120180295:120186069:120186136,	120180134	120180295	120180154	120180154	Frame_Shift_Del	G	-	p.E312fs
LIHC	TCGA-BC-A3KG-01	PRDM10	ENST00000533431.1,ENST00000304538.6,ENST00000528746.1,ENST00000360871.3	chr11	129793142:129793298:129794776:129795124:129800910:129801153,	129794777	129795124	129795077	129795077	Frame_Shift_Del	A	-	p.F530fs
LIHC	TCGA-BC-A3KG-01	SLC6A12	ENST00000545058.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	300233:300377:301643:301814:302442:302543,	301644	301814	301741	301741	Frame_Shift_Del	C	-	p.G535fs
LIHC	TCGA-BC-A3KG-01	KIF21A	ENST00000544797.2,ENST00000546817.1,ENST00000552961.1,ENST00000361418.5,ENST00000547108.1,ENST00000395670.3,ENST00000361961.3	chr12	39726838:39726909:39727013:39727082:39730897:39731005,	39727014	39727082	39727022	39727022	Frame_Shift_Del	T	-	p.T827fs
LIHC	TCGA-BC-A3KG-01	CAND1	ENST00000544619.1,ENST00000545606.1	chr12	67703680:67703850:67703931:67704096:67705472:67705580,	67703932	67704096	67703947	67703947	Frame_Shift_Del	T	-	p.F1071fs
LIHC	TCGA-BC-A3KG-01	RAB3IP	ENST00000378809.4,ENST00000362025.5,ENST00000325555.9,ENST00000552199.1,ENST00000547591.1,ENST00000417413.3,ENST00000247833.7,ENST00000550536.1,ENST00000483530.2,ENST00000378815.6	chr12	70149350:70149439:70150184:70150443:70178499:70178595,	70150185	70150443	70150397	70150397	Frame_Shift_Del	A	-	p.E171fs
LIHC	TCGA-BC-A3KG-01	CEP290	ENST00000397838.3,ENST00000552810.1,ENST00000547926.2,ENST00000604024.1	chr12	88512259:88512347:88512419:88512520:88513890:88514053,	88512420	88512520	88512483	88512483	Frame_Shift_Del	A	-	p.F520fs
LIHC	TCGA-BC-A3KG-01	POC1B	ENST00000378528.2,ENST00000539190.2,ENST00000549035.1,ENST00000313546.3	chr12	89865944:89866052:89885712:89885892:89890947:89891034,	89885713	89885892	89885822	89885822	Frame_Shift_Del	G	-	p.Q115fs
LIHC	TCGA-BC-A3KG-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95602963	95602963	Frame_Shift_Del	T	-	p.E699fs
LIHC	TCGA-BC-A3KG-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96052861:96052998:96059585:96059756:96076482:96076598,96052861:96052998:96059585:96059756:96063853:96063922,	96059586	96059756	96059604	96059604	Frame_Shift_Del	A	-	p.C578fs
LIHC	TCGA-BC-A3KG-01	ACTR6	ENST00000553038.1,ENST00000552064.1	chr12	100603943:100603986:100604072:100604129:100606033:100606132,100601440:100601564:100604072:100604129:100606033:100606132,	100604073	100604129	100604082	100604082	Frame_Shift_Del	G	-	p.V175fs
LIHC	TCGA-BC-A3KG-01	NUP37	ENST00000543021.1,ENST00000251074.1,ENST00000551744.2,ENST00000551200.1,ENST00000552283.1	chr12	102494809:102494882:102505885:102506010:102512140:102512361,	102505886	102506010	102505905	102505905	Frame_Shift_Del	A	-	p.S88fs
LIHC	TCGA-BC-A3KG-01	TCP11L2	ENST00000546625.1,ENST00000299045.3,ENST00000547153.1	chr12	106696630:106696719:106704818:106705010:106708135:106708246,	106704819	106705010	106704920	106704920	Frame_Shift_Del	T	-	p.F23fs
LIHC	TCGA-BC-A3KG-01	USP30	ENST00000392784.2,ENST00000377883.3,ENST00000257548.5	chr12	109511242:109511337:109519138:109519198:109519737:109519824,	109519139	109519198	109519170	109519170	Frame_Shift_Del	T	-	p.L251fs
LIHC	TCGA-BC-A3KG-01	NAA25	ENST00000551858.1,ENST00000552527.1,ENST00000549711.1,ENST00000261745.4	chr12	112498073:112498163:112498984:112499192:112506683:112506796,	112498985	112499192	112499140	112499140	Frame_Shift_Del	T	-	p.K401fs
LIHC	TCGA-BC-A3KG-01	RPH3A	ENST00000551052.1	chr12	113274295:113274307:113285500:113285647:113303218:113303348,113266123:113266194:113285500:113285647:113303218:113303237,	113285501	113285647	113285525	113285525	Frame_Shift_Del	C	-	p.H36fs
LIHC	TCGA-BC-A3KG-01	OASL	ENST00000339275.5	chr12	121469254:121469420:121471263:121471546:121476576:121476750,	121471264	121471546	121471412	121471412	Frame_Shift_Del	G	-	p.T111fs
LIHC	TCGA-BC-A3KG-01	NCOR2	ENST00000429285.2,ENST00000404121.2,ENST00000356219.3,ENST00000405201.1	chr12	124810736:124810916:124811954:124812179:124815390:124815444,	124811955	124812179	124812065	124812065	Frame_Shift_Del	G	-	p.P2366fs
LIHC	TCGA-BC-A3KG-01	SUGT1	ENST00000310528.8,ENST00000535397.1,ENST00000343788.6	chr13	53250364:53250455:53254108:53254290:53261868:53262007,	53254109	53254290	53254154	53254154	Frame_Shift_Del	G	-	p.W199fs
LIHC	TCGA-BC-A3KG-01	FARP1	ENST00000595437.1,ENST00000376586.2,ENST00000319562.6	chr13	99076825:99076904:99083296:99083534:99087829:99087960,	99083297	99083534	99083452	99083452	Frame_Shift_Del	C	-	p.H687fs
LIHC	TCGA-BC-A3KG-01	RALGAPA1	ENST00000553892.1,ENST00000554573.1,ENST00000554259.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000307138.6	chr14	36041765:36041924:36064839:36064995:36074791:36074915,	36064840	36064995	36064969	36064969	Frame_Shift_Del	A	-	p.F1901fs
LIHC	TCGA-BC-A3KG-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000554704.1,ENST00000307138.6,ENST00000554652.1	chr14	36211573:36211771:36217790:36218030:36219687:36219735,	36217791	36218030	36217838	36217838	Frame_Shift_Del	A	-	p.S403fs
LIHC	TCGA-BC-A3KG-01	FBXO33	ENST00000298097.7	chr14	39868769:39868991:39870379:39871065:39871604:39871715,	39870380	39871065	39870424	39870424	Frame_Shift_Del	A	-	p.L452fs
LIHC	TCGA-BC-A3KG-01	DDHD1	ENST00000323669.5	chr14	53512744:53513667:53518561:53518645:53521155:53521347,	53518562	53518645	53518599	53518599	Frame_Shift_Del	A	-	p.F828fs
LIHC	TCGA-BC-A3KG-01	DDHD1	ENST00000323669.5,ENST00000357758.3	chr14	53558628:53558650:53560033:53560162:53570400:53570574,	53560034	53560162	53560073	53560073	Frame_Shift_Del	T	-	p.I368fs
LIHC	TCGA-BC-A3KG-01	JKAMP	ENST00000557560.1,ENST00000554271.1	chr14	59951286:59951311:59953430:59953522:59954391:59954546,59951788:59951834:59953430:59953522:59954391:59954546,	59953431	59953522	59953520	59953520	Frame_Shift_Del	G	-	p.G46fs
LIHC	TCGA-BC-A3KG-01	JKAMP	ENST00000553941.1	chr14	59951286:59951311:59953398:59953522:59954391:59954546,	59953399	59953522	59953520	59953520	Frame_Shift_Del	G	-	p.G46fs
LIHC	TCGA-BC-A3KG-01	JKAMP	ENST00000554795.1,ENST00000356057.5	chr14	59951286:59951311:59953448:59953522:59954391:59954546,59951788:59951834:59953448:59953522:59954391:59954546,	59953449	59953522	59953520	59953520	Frame_Shift_Del	G	-	p.G46fs
LIHC	TCGA-BC-A3KG-01	MNAT1	ENST00000557134.1	chr14	61346431:61346553:61434946:61435115:61435276:61435398,	61434947	61435115	61435004	61435004	Frame_Shift_Del	T	-	p.S290fs
LIHC	TCGA-BC-A3KG-01	FMN1	ENST00000559610.1	chr15	33103095:33103312:33149215:33149308:33180372:33180455,	33149216	33149308	33149222	33149222	Frame_Shift_Del	G	-	p.Q1085fs
LIHC	TCGA-BC-A3KG-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34018586:34018707:34021057:34021227:34023674:34023895,	34021058	34021227	34021174	34021174	Frame_Shift_Del	T	-	p.L2385fs
LIHC	TCGA-BC-A3KG-01	LPCAT4	ENST00000566581.1	chr15	34657299:34657429:34657759:34657902:34659187:34659377,	34657760	34657902	34657887	34657887	Frame_Shift_Del	C	-	p.A44fs
LIHC	TCGA-BC-A3KG-01	SPTBN5	ENST00000320955.6	chr15	42160266:42160416:42160595:42160799:42162038:42162218,	42160596	42160799	42160734	42160734	Frame_Shift_Del	T	-	p.Q1973fs
LIHC	TCGA-BC-A3KG-01	TLN2	ENST00000489129.1,ENST00000306829.6,ENST00000559174.1,ENST00000561311.1	chr15	63127935:63127998:63128089:63128272:63131054:63131180,	63128090	63128272	63128131	63128131	Frame_Shift_Del	G	-	p.A2412fs
LIHC	TCGA-BC-A3KG-01	TLN2	ENST00000494733.1	chr15	63127935:63127998:63128089:63128317:63131054:63131180,	63128090	63128317	63128131	63128131	Frame_Shift_Del	G	-	p.A2412fs
LIHC	TCGA-BC-A3KG-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967032	64967032	Frame_Shift_Del	C	-	p.A660fs
LIHC	TCGA-BC-A3KG-01	RAB11A	ENST00000566233.1	chr15	66169669:66169865:66170099:66170293:66172008:66172017,66169669:66169865:66170099:66170293:66180038:66180074,	66170100	66170293	66170258	66170258	Frame_Shift_Del	G	-	p.R132fs
LIHC	TCGA-BC-A3KG-01	MYO9A	ENST00000561618.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72152075:72152137:72154840:72154952:72168131:72168179,	72154841	72154952	72154926	72154926	Frame_Shift_Del	A	-	p.F2002fs
LIHC	TCGA-BC-A3KG-01	HEXA	ENST00000567159.1,ENST00000568777.1,ENST00000567411.1,ENST00000569410.1,ENST00000268097.5,ENST00000457859.2,ENST00000566304.1,ENST00000567027.1	chr15	72642920:72642991:72643473:72643575:72645408:72645519,	72643474	72643575	72643520	72643520	Frame_Shift_Del	G	-	p.P209fs
LIHC	TCGA-BC-A3KG-01	CLK3	ENST00000568605.1	chr15	74912349:74912566:74914460:74914901:74917242:74917310,	74914461	74914901	74914531	74914531	Frame_Shift_Del	G	-	p.R295fs
LIHC	TCGA-BC-A3KG-01	CLK3	ENST00000568139.1,ENST00000566126.1,ENST00000395066.3,ENST00000564096.1,ENST00000345005.4	chr15	74912349:74912566:74914460:74914557:74914834:74914850,	74914461	74914557	74914531	74914531	Frame_Shift_Del	G	-	p.R295fs
LIHC	TCGA-BC-A3KG-01	MPI	ENST00000564003.1,ENST00000535694.1	chr15	75182402:75182430:75183719:75183920:75185001:75185074,	75183720	75183920	75183843	75183843	Frame_Shift_Del	T	-	p.F90fs
LIHC	TCGA-BC-A3KG-01	SCAMP5	ENST00000361900.6,ENST00000562327.1,ENST00000562212.1,ENST00000567920.1,ENST00000425597.3,ENST00000564779.1	chr15	75305017:75305146:75308933:75309090:75310137:75310282,75305019:75305146:75308933:75309090:75310210:75310266,	75308934	75309090	75308993	75308993	Frame_Shift_Del	G	-	p.G67fs
LIHC	TCGA-BC-A3KG-01	CRABP1	ENST00000299529.6	chr15	78633384:78633563:78635840:78635954:78640268:78640420,	78635841	78635954	78635923	78635923	Frame_Shift_Del	C	-	p.T111fs
LIHC	TCGA-BC-A3KG-01	CHTF18	ENST00000262315.9,ENST00000461268.1,ENST00000471202.1,ENST00000440239.1,ENST00000464728.1,ENST00000455171.2	chr16	842717:842811:842965:843064:843143:843190,	842966	843064	842970	842970	Frame_Shift_Del	C	-	p.S554fs
LIHC	TCGA-BC-A3KG-01	RPL3L	ENST00000268661.7	chr16	1997194:1997381:2000844:2000980:2002874:2003043,	2000845	2000980	2000901	2000901	Frame_Shift_Del	C	-	p.D149fs
LIHC	TCGA-BC-A3KG-01	KIAA0556	ENST00000261588.4	chr16	27751361:27752241:27760904:27761627:27763039:27763245,	27760905	27761627	27761235	27761235	Frame_Shift_Del	G	-	p.W985fs
LIHC	TCGA-BC-A3KG-01	CORO1A	ENST00000563778.1,ENST00000561815.1,ENST00000219150.5,ENST00000569970.1,ENST00000568763.1,ENST00000565497.1,ENST00000570045.1	chr16	30196529:30196728:30198136:30198266:30198359:30198404,30197918:30198041:30198136:30198266:30198359:30198404,	30198137	30198266	30198148	30198148	Frame_Shift_Del	C	-	p.I111fs
LIHC	TCGA-BC-A3KG-01	ITGAD	ENST00000389202.2	chr16	31435422:31435524:31435787:31435898:31437335:31437826,	31435788	31435898	31435841	31435841	Frame_Shift_Del	G	-	p.M1105fs
LIHC	TCGA-BC-A3KG-01	RPL23A	ENST00000422514.2,ENST00000472628.1,ENST00000394938.4,ENST00000394935.3,ENST00000496182.1,ENST00000355731.4	chr17	27049740:27049917:27050588:27050658:27050884:27050951,	27050589	27050658	27050640	27050640	Frame_Shift_Del	T	-	p.A146fs
LIHC	TCGA-BC-A3KG-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448391	56448391	Frame_Shift_Del	G	-	p.H86fs
LIHC	TCGA-BC-A3KG-01	RPS6KB1	ENST00000393021.3,ENST00000443572.2,ENST00000225577.4,ENST00000406116.3	chr17	58012553:58012661:58013575:58013638:58013824:58013902,	58013576	58013638	58013587	58013587	Frame_Shift_Del	A	-	p.R330fs
LIHC	TCGA-BC-A3KG-01	DCAF7	ENST00000582103.1	chr17	61662572:61662690:61666361:61666599:61671564:61671621,	61666362	61666599	61666420	61666420	Frame_Shift_Del	C	-	p.D305fs
LIHC	TCGA-BC-A3KG-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73094132:73094276:73096101:73096911:73100064:73100275,	73096102	73096911	73096623	73096623	Frame_Shift_Del	C	-	p.P289fs
LIHC	TCGA-BC-A3KG-01	MOCOS	ENST00000261326.5	chr18	33793328:33793445:33795478:33795940:33800017:33800180,	33795479	33795940	33795540	33795540	Frame_Shift_Del	G	-	p.R466fs
LIHC	TCGA-BC-A3KG-01	PIK3C3	ENST00000593098.1,ENST00000262039.4,ENST00000590013.1,ENST00000398870.3	chr18	39609288:39609405:39613789:39613921:39617655:39617781,	39613790	39613921	39613864	39613864	Frame_Shift_Del	T	-	p.P594fs
LIHC	TCGA-BC-A3KG-01	SLC14A1	ENST00000590246.1	chr18	43304914:43304978:43310979:43311169:43314238:43314297,43307338:43307383:43310979:43311169:43314238:43314297,	43310980	43311169	43311060	43311060	Frame_Shift_Del	G	-	p.G78fs
LIHC	TCGA-BC-A3KG-01	ME2	ENST00000321341.5	chr18	48458627:48458730:48465939:48466010:48466657:48466756,	48465940	48466010	48465991	48465991	Frame_Shift_Del	T	-	p.V490fs
LIHC	TCGA-BC-A3KG-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204249	56204249	Frame_Shift_Del	A	-	p.L1057fs
LIHC	TCGA-BC-A3KG-01	SEC11C	ENST00000299714.3	chr18	56816744:56816854:56819767:56819844:56822919:56823039,	56819768	56819844	56819787	56819787	Frame_Shift_Del	T	-	p.F73fs
LIHC	TCGA-BC-A3KG-01	SEC11C	ENST00000509791.3,ENST00000587834.1,ENST00000588875.1	chr18	56816744:56816854:56819767:56819917:56822919:56823039,	56819768	56819917	56819787	56819787	Frame_Shift_Del	T	-	p.F73fs
LIHC	TCGA-BC-A3KG-01	CDH20	ENST00000538374.1,ENST00000536675.2,ENST00000262717.4	chr18	59167615:59167735:59170185:59170353:59174605:59174793,	59170186	59170353	59170334	59170334	Frame_Shift_Del	C	-	p.N270fs
LIHC	TCGA-BC-A3KG-01	ARID3A	ENST00000263620.3	chr19	964247:964431:964832:965080:966571:966868,	964833	965080	965018	965018	Frame_Shift_Del	C	-	p.S379fs
LIHC	TCGA-BC-A3KG-01	NFIC	ENST00000589123.1,ENST00000589164.1,ENST00000443272.2	chr19	3452638:3452664:3453760:3453914:3456547:3456598,	3453761	3453914	3453788	3453788	Frame_Shift_Del	C	-	p.P424fs
LIHC	TCGA-BC-A3KG-01	CHAF1A	ENST00000301280.5	chr19	4405908:4405959:4408899:4409756:4418016:4418073,	4408900	4409756	4409481	4409481	Frame_Shift_Del	G	-	p.G230fs
LIHC	TCGA-BC-A3KG-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8139954:8140074:8140166:8140295:8145886:8145940,	8140167	8140295	8140275	8140275	Frame_Shift_Del	G	-	p.Q2492fs
LIHC	TCGA-BC-A3KG-01	LRP3	ENST00000253193.7,ENST00000592484.1	chr19	33693753:33693892:33695543:33695758:33696151:33696197,	33695544	33695758	33695655	33695655	Frame_Shift_Del	C	-	p.I124fs
LIHC	TCGA-BC-A3KG-01	UBA2	ENST00000246548.4,ENST00000592841.1	chr19	34919413:34919475:34921480:34921564:34922765:34922836,	34921481	34921564	34921529	34921529	Frame_Shift_Del	T	-	p.F63fs
LIHC	TCGA-BC-A3KG-01	RYR1	ENST00000601514.1	chr19	39018729:39018834:39018945:39019058:39019238:39019335,	39018946	39019058	39018989	39018989	Frame_Shift_Del	T	-	p.L3619fs
LIHC	TCGA-BC-A3KG-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39055598:39056411:39057550:39057627:39058412:39058557,	39057551	39057627	39057590	39057590	Frame_Shift_Del	C	-	p.P4488fs
LIHC	TCGA-BC-A3KG-01	DHDH	ENST00000221403.2	chr19	49442705:49442958:49445696:49445821:49447613:49447764,	49445697	49445821	49445731	49445731	Frame_Shift_Del	C	-	p.Y218fs
LIHC	TCGA-BC-A3KG-01	GYS1	ENST00000323798.3,ENST00000541188.1,ENST00000472004.1,ENST00000544287.1,ENST00000263276.6,ENST00000496048.1	chr19	49477469:49477596:49477876:49477990:49481180:49481243,	49477877	49477990	49477963	49477963	Frame_Shift_Del	G	-	p.H446fs
LIHC	TCGA-BC-A3KG-01	PPFIA3	ENST00000602351.1,ENST00000334186.4,ENST00000602655.1,ENST00000602848.1,ENST00000602905.1,ENST00000602897.1	chr19	49652513:49652582:49652803:49652975:49653336:49653408,	49652804	49652975	49652900	49652900	Frame_Shift_Del	C	-	p.P1152fs
LIHC	TCGA-BC-A3KG-01	TRPM4	ENST00000598502.1,ENST00000427978.2,ENST00000595519.1,ENST00000252826.5	chr19	49674841:49675026:49675265:49675365:49685834:49686179,49674834:49675026:49675265:49675365:49684605:49684718,	49675266	49675365	49675354	49675354	Frame_Shift_Del	C	-	p.A380fs
LIHC	TCGA-BC-A3KG-01	NSFL1C	ENST00000350991.4,ENST00000381653.5,ENST00000487086.1,ENST00000216879.4,ENST00000476071.1,ENST00000353088.2,ENST00000489203.2	chr20	1438844:1438919:1444973:1445071:1447364:1447467,	1444974	1445071	1445003	1445003	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-BC-A3KG-01	CDC25B	ENST00000340833.4,ENST00000439880.2,ENST00000245960.5,ENST00000344256.6,ENST00000467519.1,ENST00000379598.5	chr20	3784050:3784184:3785215:3785327:3785467:3785705,	3785216	3785327	3785258	3785258	Frame_Shift_Del	C	-	p.Y511fs
LIHC	TCGA-BC-A3KG-01	MCM8	ENST00000265187.4,ENST00000378896.3	chr20	5952652:5952683:5953701:5953842:5958521:5958663,	5953702	5953842	5953747	5953747	Frame_Shift_Del	A	-	p.K434fs
LIHC	TCGA-BC-A3KG-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19955472	19955472	Frame_Shift_Del	C	-	p.A317fs
LIHC	TCGA-BC-A3KG-01	ABHD12	ENST00000450393.1,ENST00000339157.5,ENST00000471287.1,ENST00000376542.3,ENST00000491682.1	chr20	25300834:25300954:25303960:25304066:25319862:25319987,	25303961	25304066	25303972	25303972	Frame_Shift_Del	G	-	p.T137fs
LIHC	TCGA-BC-A3KG-01	ITCH	ENST00000486883.1	chr20	32957199:32957276:32981575:32981687:32996456:32996598,	32981576	32981687	32981659	32981659	Frame_Shift_Del	C	-	p.L14fs
LIHC	TCGA-BC-A3KG-01	ITCH	ENST00000374864.4,ENST00000262650.6	chr20	32957199:32957276:32981596:32981687:32996456:32996598,	32981597	32981687	32981659	32981659	Frame_Shift_Del	C	-	p.L14fs
LIHC	TCGA-BC-A3KG-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3,ENST00000537204.1,ENST00000461423.1	chr20	37137727:37137851:37144834:37145013:37146148:37146297,	37144835	37145013	37144856	37144856	Frame_Shift_Del	C	-	p.N298fs
LIHC	TCGA-BC-A3KG-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3	chr20	37174885:37175073:37177331:37177438:37179713:37179866,	37177332	37177438	37177407	37177407	Frame_Shift_Del	T	-	p.L994fs
LIHC	TCGA-BC-A3KG-01	MYBL2	ENST00000396863.4,ENST00000217026.4	chr20	42328396:42328684:42331129:42331543:42333858:42333998,	42331130	42331543	42331178	42331178	Frame_Shift_Del	C	-	p.P334fs
LIHC	TCGA-BC-A3KG-01	HNF4A	ENST00000316673.4,ENST00000443598.2,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000609795.1,ENST00000316099.4	chr20	43047064:43047152:43048360:43048516:43052657:43052894,	43048361	43048516	43048503	43048503	Frame_Shift_Del	C	-	p.I293fs
LIHC	TCGA-BC-A3KG-01	PTGIS	ENST00000478971.1	chr20	48160841:48160985:48166602:48166726:48184579:48184653,	48166603	48166726	48166687	48166687	Frame_Shift_Del	G	-	p.P38fs
LIHC	TCGA-BC-A3KG-01	USP25	ENST00000285679.6	chr21	17205666:17205867:17214716:17214859:17236586:17236765,	17214717	17214859	17214757	17214757	Frame_Shift_Del	A	-	p.S745fs
LIHC	TCGA-BC-A3KG-01	CCT8	ENST00000431234.1,ENST00000542732.1,ENST00000494296.1,ENST00000286788.4,ENST00000484403.1,ENST00000481059.1,ENST00000470450.1	chr21	30439910:30440026:30441743:30441823:30442567:30442658,	30441744	30441823	30441812	30441812	Frame_Shift_Del	T	-	p.M55fs
LIHC	TCGA-BC-A3KG-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000481605.1,ENST00000399017.2	chr21	38519780:38519903:38520845:38520947:38522377:38522470,	38520846	38520947	38520888	38520888	Frame_Shift_Del	T	-	p.F687fs
LIHC	TCGA-BC-A3KG-01	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41711045:41711342:41719596:41719872:41725391:41725581,	41719597	41719872	41719690	41719690	Frame_Shift_Del	C	-	p.D373fs
LIHC	TCGA-BC-A3KG-01	TRAPPC10	ENST00000291574.4,ENST00000380221.3,ENST00000422875.1	chr21	45451971:45452053:45457672:45457808:45472160:45472357,	45457673	45457808	45457789	45457789	Frame_Shift_Del	T	-	p.I89fs
LIHC	TCGA-BC-A3KG-01	TTC28	ENST00000397906.2	chr22	28501266:28501790:28503049:28504391:28559079:28559587,	28503050	28504391	28503078	28503078	Frame_Shift_Del	C	-	p.A919fs
LIHC	TCGA-BC-A3KG-01	SFI1	ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000400289.1,ENST00000400288.2,ENST00000432498.1,ENST00000540643.1	chr22	31999732:31999805:32000294:32000390:32000854:32000931,	32000295	32000390	32000320	32000320	Frame_Shift_Del	G	-	p.R605fs
LIHC	TCGA-BC-A3KG-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51159377	51159377	Frame_Shift_Del	C	-	p.A1025fs
LIHC	TCGA-BC-A3KG-01	GYG2	ENST00000542787.1,ENST00000398806.3,ENST00000520904.1,ENST00000353656.6,ENST00000381163.3,ENST00000338623.5	chrX	2761253:2761395:2772020:2772195:2773033:2773122,	2772021	2772195	2772175	2772175	Frame_Shift_Del	T	-	p.F133fs
LIHC	TCGA-BC-A3KG-01	PORCN	ENST00000486272.1	chrX	48367811:48368095:48368280:48368344:48369682:48369763,	48368281	48368344	48368297	48368297	Frame_Shift_Del	G	-	p.W30fs
LIHC	TCGA-BC-A3KG-01	PORCN	ENST00000528612.1,ENST00000491243.1	chrX	48367427:48367491:48368171:48368344:48369753:48369875,	48368172	48368344	48368297	48368297	Frame_Shift_Del	G	-	p.W30fs
LIHC	TCGA-BC-A3KG-01	PORCN	ENST00000367574.4,ENST00000485288.2	chrX	48367427:48367491:48367955:48368344:48369753:48369875,	48367956	48368344	48368297	48368297	Frame_Shift_Del	G	-	p.W30fs
LIHC	TCGA-BC-A3KG-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67938120	67938120	Frame_Shift_Del	G	-	p.W375fs
LIHC	TCGA-BC-A3KG-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67938225	67938225	Frame_Shift_Del	C	-	p.A410fs
LIHC	TCGA-BC-A3KG-01	NXF3	ENST00000425644.1	chrX	102339269:102339423:102339642:102339811:102347923:102348022,	102339643	102339811	102339750	102339750	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-BC-A3KG-01	HS6ST2	ENST00000521489.1,ENST00000370833.2	chrX	131803140:131803227:131842489:131842522:132090835:132091344,	131842490	131842522	131842510	131842510	Frame_Shift_Del	A	-	p.F320fs
LIHC	TCGA-BC-A69H-01	HGS	ENST00000575058.1,ENST00000329138.4	chr17	79660704:79660782:79660899:79660995:79661844:79661883,	79660900	79660995	79660939	79660939	Frame_Shift_Del	C	-	p.P294fs
LIHC	TCGA-BC-A69I-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148674851:148674995:148676015:148676161:148677798:148677913,	148676016	148676161	148676024	148676024	Frame_Shift_Del	A	-	p.L275fs
LIHC	TCGA-BD-A2L6-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967357	91967357	Frame_Shift_Del	A	-	p.L28fs
LIHC	TCGA-BD-A2L6-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
LIHC	TCGA-BD-A2L6-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629104	18629105	Frame_Shift_Ins	-	A	p.L121fs
LIHC	TCGA-BD-A3EP-01	SLC12A7	ENST00000264930.5	chr5	1076808:1076927:1077947:1078122:1078815:1078873,	1077948	1078122	1078000	1078000	Frame_Shift_Del	G	-	p.A526fs
LIHC	TCGA-BD-A3EP-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148454074:148454242:148456395:148456446:148456639:148456730,	148456396	148456446	148456419	148456422	Frame_Shift_Del	CTGT	-	p.DC169fs
LIHC	TCGA-BW-A5NO-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220300091:220300185:220307743:220307852:220310150:220310253,	220307744	220307852	220307815	220307816	Frame_Shift_Del	TT	-	p.L565fs
LIHC	TCGA-BW-A5NO-01	OBSCN	ENST00000570156.2,ENST00000359599.6	chr1	228451816:228452092:228456230:228456506:228459625:228459922,	228456231	228456506	228456502	228456502	Frame_Shift_Del	G	-	p.V1895fs
LIHC	TCGA-BW-A5NO-01	PLEKHG6	ENST00000011684.7,ENST00000449001.2,ENST00000304581.8,ENST00000396988.3	chr12	6435593:6435739:6436419:6437112:6437301:6437651,	6436420	6437112	6436779	6436780	Frame_Shift_Ins	-	A	p.R645fs
LIHC	TCGA-BW-A5NQ-01	NNT	ENST00000512422.1,ENST00000344920.4,ENST00000505678.2,ENST00000264663.5	chr5	43609244:43609448:43613009:43613239:43615949:43616136,	43613010	43613239	43613188	43613189	Frame_Shift_Ins	-	G	p.GP110fs
LIHC	TCGA-CC-5258-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189863399:189863444:189864010:189864109:189864195:189864303,	189864011	189864109	189864055	189864056	Frame_Shift_Ins	-	G	p.AG689fs
LIHC	TCGA-CC-5258-01	ATP2B2	ENST00000383800.4,ENST00000397077.1,ENST00000452124.1,ENST00000360273.2,ENST00000460129.1,ENST00000352432.4,ENST00000343816.4	chr3	10391795:10391883:10392081:10392261:10400374:10400609,	10392082	10392261	10392182	10392183	Frame_Shift_Ins	-	G	p.G694fs
LIHC	TCGA-CC-5258-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274159	80274160	Frame_Shift_Ins	-	T	p.S175fs
LIHC	TCGA-CC-5258-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274162	80274162	Frame_Shift_Del	G	-	p.P174fs
LIHC	TCGA-CC-5259-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603106	111603106	Frame_Shift_Del	C	-	p.T61fs
LIHC	TCGA-CC-5259-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
LIHC	TCGA-CC-5259-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214755	108214755	Frame_Shift_Del	T	-	p.K535fs
LIHC	TCGA-CC-5259-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000564954.1,ENST00000348261.5	chr16	1245028:1245083:1245431:1245565:1245925:1246023,	1245432	1245565	1245562	1245563	Frame_Shift_Ins	-	G	p.G181fs
LIHC	TCGA-CC-5259-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467120	58467121	Frame_Shift_Ins	-	T	p.S763fs
LIHC	TCGA-CC-5260-01	TCEANC2	ENST00000234827.1	chr1	54519273:54519431:54520053:54520197:54534428:54534570,	54520054	54520197	54520147	54520148	Frame_Shift_Ins	-	T	p.R18fs
LIHC	TCGA-CC-5260-01	ECT2	ENST00000437296.1,ENST00000486027.1	chr3	172534488:172534627:172536337:172536604:172537937:172538027,	172536338	172536604	172536395	172536396	Frame_Shift_Del	CA	-	p.Q874fs
LIHC	TCGA-CC-5260-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39066558:39066601:39068557:39068688:39068783:39068844,	39068558	39068688	39068595	39068595	Frame_Shift_Del	G	-	p.R4732fs
LIHC	TCGA-CC-5262-01	TMEM175	ENST00000514453.1,ENST00000515876.1,ENST00000513952.1,ENST00000510493.1,ENST00000508204.1,ENST00000264771.4,ENST00000452360.2,ENST00000515492.1,ENST00000515740.1,ENST00000438836.2,ENST00000504180.1	chr4	944994:945046:946154:946238:946977:947091,945469:945505:946154:946238:946977:947091,	946155	946238	946206	946207	Frame_Shift_Del	TG	-	p.C144fs
LIHC	TCGA-CC-5263-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
LIHC	TCGA-CC-5263-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
LIHC	TCGA-CC-5264-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93142714:93142775:93159358:93159456:93159855:93159945,	93159359	93159456	93159366	93159366	Frame_Shift_Del	T	-	p.M408fs
LIHC	TCGA-CC-5264-01	TPO	ENST00000497517.2	chr2	1500366:1500537:1507719:1507851:1520654:1520751,1497573:1497811:1507719:1507851:1520654:1520751,	1507720	1507851	1507747	1507748	Frame_Shift_Ins	-	C	p.P805fs
LIHC	TCGA-CC-5264-01	UBXN7	ENST00000381887.3,ENST00000493566.1	chr3	196129822:196129890:196134116:196134264:196159197:196159268,	196134117	196134264	196134222	196134222	Frame_Shift_Del	T	-	p.N41fs
LIHC	TCGA-CC-5264-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384448	12384448	Frame_Shift_Del	A	-	p.W256fs
LIHC	TCGA-CC-A123-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000605788.1,ENST00000461421.1,ENST00000476468.1,ENST00000488254.2,ENST00000464969.2	chr10	103918949:103919065:103919189:103919325:103919652:103919695,	103919190	103919325	103919299	103919299	Frame_Shift_Del	A	-	p.Q288fs
LIHC	TCGA-CC-A123-01	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000338354.3	chr10	124350994:124351033:124351787:124352111:124353084:124353114,	124351788	124352111	124351943	124351944	Frame_Shift_Ins	-	G	p.G778fs
LIHC	TCGA-CC-A123-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65350204	65350219	Frame_Shift_Del	ACTGAAGATAGAAGAT	-	p.PLKIED687fs
LIHC	TCGA-CC-A123-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393494	65393495	Frame_Shift_Ins	-	C	p.E213fs
LIHC	TCGA-CC-A1HT-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31605091	31605092	Frame_Shift_Ins	-	T	p.G471fs
LIHC	TCGA-CC-A1HT-01	RMDN3	ENST00000560588.1,ENST00000260385.6,ENST00000558232.1,ENST00000338376.3,ENST00000558777.1	chr15	41029485:41029539:41029825:41029924:41030162:41030240,	41029826	41029924	41029894	41029894	Frame_Shift_Del	T	-	p.T386fs
LIHC	TCGA-CC-A1HT-01	SNUPN	ENST00000371091.5,ENST00000564644.1	chr15	75913386:75913397:75917055:75917276:75917676:75917979,	75917056	75917276	75917121	75917121	Frame_Shift_Del	T	-	p.N22fs
LIHC	TCGA-CC-A3M9-01	HNRNPD	ENST00000514671.1,ENST00000353341.4,ENST00000508119.1	chr4	83276456:83276554:83277948:83278048:83278465:83278545,	83277949	83278048	83278019	83278020	Frame_Shift_Ins	-	C	p.A261fs
LIHC	TCGA-CC-A3M9-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155167	106155168	Frame_Shift_Ins	-	T	p.H23fs
LIHC	TCGA-CC-A3M9-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155168	106155169	Frame_Shift_Ins	-	CA	p.L24fs
LIHC	TCGA-CC-A3M9-01	MEGF11	ENST00000490495.1,ENST00000360698.4	chr15	66208485:66208614:66208935:66209294:66210303:66210432,	66208936	66209294	66209208	66209209	Frame_Shift_Ins	-	G	p.P725fs
LIHC	TCGA-CC-A3M9-01	MEGF11	ENST00000288745.3,ENST00000395614.1,ENST00000409699.2,ENST00000395625.2,ENST00000422354.1	chr15	66208485:66208614:66209165:66209294:66210303:66210432,	66209166	66209294	66209208	66209209	Frame_Shift_Ins	-	G	p.P725fs
LIHC	TCGA-CC-A3MC-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985083	36985083	Frame_Shift_Del	A	-	p.K603fs
LIHC	TCGA-CC-A3MC-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334907	Frame_Shift_Del	T	-	p.K923fs
LIHC	TCGA-CC-A5UC-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396352	396352	Frame_Shift_Del	C	-	p.S226fs
LIHC	TCGA-CC-A5UD-01	OBSCN	ENST00000570156.2,ENST00000359599.6	chr1	228444351:228444627:228447201:228447477:228451816:228452092,	228447202	228447477	228447428	228447429	Frame_Shift_Ins	-	A	p.L1697fs
LIHC	TCGA-CC-A5UD-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670764	13670765	Frame_Shift_Del	GC	-	p.QR938fs
LIHC	TCGA-CC-A5UE-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000510166.1,ENST00000509063.1,ENST00000515133.1,ENST00000441319.1	chr4	74270017:74270123:74272345:74272478:74275071:74275204,74270837:74270890:74272345:74272478:74274310:74274457,	74272346	74272478	74272392	74272393	Frame_Shift_Ins	-	ATCA	p.S62fs
LIHC	TCGA-CC-A5UE-01	PTGR1	ENST00000466771.1,ENST00000238248.3,ENST00000374324.1	chr9	114325246:114325511:114332370:114332489:114337013:114337118,114326518:114326542:114332370:114332489:114337013:114337118,	114332371	114332489	114332480	114332480	Frame_Shift_Del	G	-	p.P257fs
LIHC	TCGA-CC-A5UE-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752447	8752447	Frame_Shift_Del	G	-	p.A130fs
LIHC	TCGA-CC-A5UE-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420979	49420979	Frame_Shift_Del	A	-	p.S4924fs
LIHC	TCGA-CC-A7IF-01	STX10	ENST00000593126.1,ENST00000589083.1,ENST00000591197.1,ENST00000587318.1,ENST00000242770.5,ENST00000588848.1,ENST00000440593.3,ENST00000587230.1	chr19	13256116:13256209:13259842:13259905:13260312:13260407,	13259843	13259905	13259885	13259886	Frame_Shift_Ins	-	A	p.E107fs
LIHC	TCGA-CC-A7IF-01	RPS4Y1	ENST00000430575.1,ENST00000250784.8	chrY	2713686:2713784:2722640:2722812:2733128:2733286,	2722641	2722812	2722723	2722724	Frame_Shift_Ins	-	CT	p.L148fs
LIHC	TCGA-CC-A7IG-01	NOL4	ENST00000586314.1,ENST00000535475.1,ENST00000590712.1,ENST00000586553.1	chr18	31463207:31463388:31523028:31523142:31538202:31538382,	31523029	31523142	31523091	31523097	Frame_Shift_Del	CCAAGAT	-	p.ILA492fs
LIHC	TCGA-CC-A7IH-01	NCSTN	ENST00000421914.1,ENST00000535857.1,ENST00000437169.1	chr1	160313182:160313271:160314511:160314616:160318788:160318912,	160314512	160314616	160314603	160314606	Frame_Shift_Del	GATT	-	p.QI39fs
LIHC	TCGA-CC-A7IH-01	SHOC2	ENST00000369452.4	chr10	112679360:112679415:112723882:112724819:112745385:112745523,	112723883	112724819	112724768	112724768	Frame_Shift_Del	A	-	p.S218fs
LIHC	TCGA-CC-A7IH-01	ACSM5	ENST00000331849.4	chr16	20430549:20430757:20432579:20432723:20435237:20435391,	20432580	20432723	20432662	20432663	Frame_Shift_Ins	-	C	p.P236fs
LIHC	TCGA-CC-A7II-01	KIAA1211L	ENST00000397899.2	chr2	99413830:99414000:99438319:99440000:99443437:99443632,	99438320	99440000	99439605	99439605	Frame_Shift_Del	G	-	p.P377fs
LIHC	TCGA-CC-A7II-01	POLDIP3	ENST00000348657.2,ENST00000445215.1,ENST00000252115.5,ENST00000491021.1	chr22	42981919:42981974:42983511:42983578:42987960:42988090,	42983512	42983578	42983538	42983538	Frame_Shift_Del	A	-	p.V354fs
LIHC	TCGA-CC-A7IJ-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800434	39800434	Frame_Shift_Del	A	-	p.Q2725fs
LIHC	TCGA-CC-A7IJ-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2137863:2137942:2138048:2138140:2138227:2138326,	2138049	2138140	2138085	2138088	Frame_Shift_Del	TCGT	-	p.IV1702fs
LIHC	TCGA-CC-A7IJ-01	TYMP	ENST00000425169.1	chr22	50966940:50967039:50967564:50967767:50967924:50968148,50966016:50966146:50967564:50967767:50967924:50968148,	50967565	50967767	50967719	50967743	Frame_Shift_Del	GTCTCCTCCAGATCCATGCCCCGAA	-	p.LRGMDLEET80fs
LIHC	TCGA-CC-A7IK-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576866	7576866	Frame_Shift_Del	T	-	p.Y327fs
LIHC	TCGA-CC-A7IK-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755179	6755180	Frame_Shift_Ins	-	G	p.D215fs
LIHC	TCGA-DD-A116-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
LIHC	TCGA-DD-A116-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604680	160604680	Frame_Shift_Del	T	-	p.T293fs
LIHC	TCGA-DD-A116-01	TENM2	ENST00000403607.2	chr5	167553761:167553944:167589615:167589762:167617341:167617552,	167589616	167589762	167589696	167589697	Frame_Shift_Ins	-	G	p.E714fs
LIHC	TCGA-DD-A116-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549399	32549399	Frame_Shift_Del	C	-	p.S196fs
LIHC	TCGA-DD-A116-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549402	32549403	Frame_Shift_Ins	-	T	p.K195fs
LIHC	TCGA-DD-A116-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549580	32549580	Frame_Shift_Del	G	-	p.Q136fs
LIHC	TCGA-DD-A116-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549584	32549585	Frame_Shift_Ins	-	T	p.N134fs
LIHC	TCGA-DD-A116-01	ADAM32	ENST00000379907.4	chr8	39044427:39044564:39068662:39068843:39079128:39079221,	39068663	39068843	39068767	39068767	Frame_Shift_Del	A	-	p.Q386fs
LIHC	TCGA-DD-A116-01	GRID1	ENST00000327946.7,ENST00000536331.1	chr10	87373163:87373404:87379623:87379790:87406958:87407154,	87379624	87379790	87379650	87379651	Frame_Shift_Ins	-	C	p.T778fs
LIHC	TCGA-DD-A116-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726211	71726220	Frame_Shift_Del	CCTGATGGGC	-	p.AHQA777fs
LIHC	TCGA-DD-A116-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735970	4735970	Frame_Shift_Del	A	-	p.S700fs
LIHC	TCGA-DD-A116-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624320	117624320	Frame_Shift_Del	A	-	p.F144fs
LIHC	TCGA-DD-A116-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958026	76958026	Frame_Shift_Del	T	-	p.K625fs
LIHC	TCGA-DD-A116-01	ARHGAP33	ENST00000589133.1,ENST00000314737.5,ENST00000378944.5,ENST00000221905.1,ENST00000007510.4	chr19	36268725:36268810:36269181:36269262:36269365:36269451,	36269182	36269262	36269208	36269209	Frame_Shift_Ins	-	C	p.Q73fs
LIHC	TCGA-DD-A116-01	FHOD3	ENST00000590592.1	chr18	34205473:34205712:34229278:34229368:34232532:34232892,	34229279	34229368	34229330	34229331	Frame_Shift_Del	AG	-	p.EE416fs
LIHC	TCGA-DD-A119-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131670854	131670855	Frame_Shift_Del	CT	-	p.L471fs
LIHC	TCGA-DD-A11A-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462464	39462464	Frame_Shift_Del	A	-	p.K36fs
LIHC	TCGA-DD-A11A-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
LIHC	TCGA-DD-A11A-01	DDX50	ENST00000471475.1,ENST00000373585.3,ENST00000483593.1	chr10	70670062:70670138:70670823:70671002:70672917:70672986,	70670824	70671002	70670982	70670982	Frame_Shift_Del	A	-	p.K208fs
LIHC	TCGA-DD-A11A-01	ZNF133	ENST00000535822.1	chr20	18269177:18269248:18286962:18287037:18295712:18295750,	18286963	18287037	18287008	18287008	Frame_Shift_Del	A	-	p.E63fs
LIHC	TCGA-DD-A11C-01	PPP1R10	ENST00000376511.2	chr6	30572364:30572512:30572770:30572871:30573699:30573775,	30572771	30572871	30572795	30572795	Frame_Shift_Del	T	-	p.K310fs
LIHC	TCGA-DD-A11D-01	BRSK2	ENST00000308230.5,ENST00000544817.1,ENST00000529433.1,ENST00000529951.1,ENST00000526768.1	chr11	1477827:1477917:1478184:1478279:1482199:1482366,1477847:1477917:1478184:1478279:1480421:1480466,	1478185	1478279	1478238	1478238	Frame_Shift_Del	A	-	p.K605fs
LIHC	TCGA-DD-A1E9-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4	chr14	94847207:94847478:94848928:94849578:94854896:94854926,	94848929	94849578	94848963	94848964	Frame_Shift_Del	TG	-	p.T204fs
LIHC	TCGA-DD-A1EA-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549399	32549399	Frame_Shift_Del	C	-	p.S196fs
LIHC	TCGA-DD-A1EA-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549402	32549403	Frame_Shift_Ins	-	T	p.K195fs
LIHC	TCGA-DD-A1EA-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549584	32549585	Frame_Shift_Ins	-	T	p.N134fs
LIHC	TCGA-DD-A1EA-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735965	4735966	Frame_Shift_Ins	-	C	p.G701fs
LIHC	TCGA-DD-A1EA-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735970	4735970	Frame_Shift_Del	A	-	p.S700fs
LIHC	TCGA-DD-A1EA-01	RPS6KL1	ENST00000555834.1	chr14	75375552:75375635:75375803:75376851:75377950:75377979,	75375804	75376851	75376302	75376303	Frame_Shift_Ins	-	C	p.A405fs
LIHC	TCGA-DD-A1EA-01	RPS6KL1	ENST00000358328.4,ENST00000354625.2,ENST00000557413.1,ENST00000555009.1,ENST00000555647.1	chr14	75375803:75375893:75376245:75376851:75377950:75377979,	75376246	75376851	75376302	75376303	Frame_Shift_Ins	-	C	p.A405fs
LIHC	TCGA-DD-A1EA-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547374	19547375	Frame_Shift_Ins	-	A	p.Q128fs
LIHC	TCGA-DD-A1EA-01	PIM2	ENST00000376509.4	chrX	48771672:48771848:48772296:48772669:48775057:48775108,	48772297	48772669	48772473	48772474	Frame_Shift_Ins	-	T	p.P140fs
LIHC	TCGA-DD-A1EB-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
LIHC	TCGA-DD-A1EB-01	NPAS2	ENST00000486017.1,ENST00000427413.1,ENST00000448812.1,ENST00000542504.1,ENST00000335681.5	chr2	101549374:101549463:101554214:101554304:101564696:101564761,	101554215	101554304	101554302	101554302	Frame_Shift_Del	C	-	p.P121fs
LIHC	TCGA-DD-A1EB-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
LIHC	TCGA-DD-A1EB-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549580	32549580	Frame_Shift_Del	G	-	p.Q136fs
LIHC	TCGA-DD-A1EB-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549584	32549585	Frame_Shift_Ins	-	T	p.N134fs
LIHC	TCGA-DD-A1EB-01	DNAJC17	ENST00000559238.1,ENST00000220496.4	chr15	41068401:41068490:41068739:41068825:41071420:41071508,	41068740	41068825	41068801	41068802	Frame_Shift_Ins	-	C	p.P107fs
LIHC	TCGA-DD-A1EB-01	IMMP2L	ENST00000450877.1	chr7	110603555:110603621:111031893:111032075:111032857:111032971,	111031894	111032075	111031945	111031946	Frame_Shift_Del	AA	-	p.L45fs
LIHC	TCGA-DD-A1EB-01	PQBP1	ENST00000465859.1	chrX	48759232:48759319:48759495:48759794:48760008:48760070,	48759496	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.R151fs
LIHC	TCGA-DD-A1EB-01	PQBP1	ENST00000443648.1,ENST00000447146.2,ENST00000473764.1,ENST00000396763.1,ENST00000477997.1,ENST00000474671.1,ENST00000376563.1,ENST00000218224.4	chrX	48759232:48759319:48759509:48759794:48760008:48760070,	48759510	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.R151fs
LIHC	TCGA-DD-A1EC-01	WNK1	ENST00000530271.2	chr12	971248:971436:974275:974530:977031:978270,	974276	974530	974308	974309	Frame_Shift_Ins	-	C	p.H725fs
LIHC	TCGA-DD-A1ED-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31604973	31604973	Frame_Shift_Del	A	-	p.F510fs
LIHC	TCGA-DD-A1EF-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
LIHC	TCGA-DD-A1EF-01	HLA-A	ENST00000376806.5,ENST00000461903.1	chr6	29912143:29912174:29912276:29912411:29912835:29912868,	29912277	29912411	29912395	29912396	Frame_Shift_Ins	-	GG	p.R339fs
LIHC	TCGA-DD-A1EF-01	HLA-A	ENST00000496081.1	chr6	29911898:29912174:29912276:29912868:29913010:29913058,	29912277	29912868	29912395	29912396	Frame_Shift_Ins	-	GG	p.R339fs
LIHC	TCGA-DD-A1EF-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549580	32549580	Frame_Shift_Del	G	-	p.Q136fs
LIHC	TCGA-DD-A1EF-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549584	32549585	Frame_Shift_Ins	-	T	p.N134fs
LIHC	TCGA-DD-A1EG-01	NOC2L	ENST00000327044.6,ENST00000477976.1	chr1	881781:881925:883510:883612:883869:883971,	883511	883612	883579	883579	Frame_Shift_Del	G	-	p.L531fs
LIHC	TCGA-DD-A1EG-01	AGRN	ENST00000379370.2	chr1	984615:984831:984945:985175:985282:985417,	984946	985175	984994	984994	Frame_Shift_Del	T	-	p.R1521fs
LIHC	TCGA-DD-A1EG-01	C1orf159	ENST00000448924.1,ENST00000379339.1	chr1	1025785:1025808:1026255:1026363:1026851:1026945,	1026256	1026363	1026328	1026328	Frame_Shift_Del	T	-	p.Q36fs
LIHC	TCGA-DD-A1EG-01	C1orf159	ENST00000448924.1,ENST00000379339.1	chr1	1025785:1025808:1026255:1026363:1026851:1026945,	1026256	1026363	1026353	1026353	Frame_Shift_Del	T	-	p.N28fs
LIHC	TCGA-DD-A1EG-01	SCNN1D	ENST00000400928.3,ENST00000325425.8,ENST00000379101.4,ENST00000379099.3,ENST00000379116.5,ENST00000338555.2	chr1	1223052:1223216:1223318:1223417:1225650:1225768,	1223319	1223417	1223381	1223381	Frame_Shift_Del	G	-	p.E378fs
LIHC	TCGA-DD-A1EG-01	ACAP3	ENST00000467278.1,ENST00000354700.5	chr1	1229878:1230008:1230097:1230196:1230826:1230934,	1230098	1230196	1230169	1230169	Frame_Shift_Del	C	-	p.G614fs
LIHC	TCGA-DD-A1EG-01	ACAP3	ENST00000354980.3,ENST00000472541.1,ENST00000492936.1,ENST00000354700.5,ENST00000353662.3	chr1	1235575:1235582:1235888:1236072:1237367:1237426,	1235889	1236072	1235945	1235945	Frame_Shift_Del	C	-	p.A156fs
LIHC	TCGA-DD-A1EG-01	ACAP3	ENST00000354980.3,ENST00000472541.1,ENST00000492936.1,ENST00000354700.5,ENST00000353662.3	chr1	1235575:1235582:1235888:1236072:1237367:1237426,	1235889	1236072	1236005	1236005	Frame_Shift_Del	G	-	p.L136fs
LIHC	TCGA-DD-A1EG-01	VWA1	ENST00000476993.1	chr1	1371114:1371201:1372306:1372864:1374460:1375598,	1372307	1372864	1372625	1372625	Frame_Shift_Del	C	-	p.A131fs
LIHC	TCGA-DD-A1EG-01	ATAD3C	ENST00000378785.2	chr1	1391170:1391296:1391604:1391729:1392508:1392560,	1391605	1391729	1391667	1391667	Frame_Shift_Del	G	-	p.M209fs
LIHC	TCGA-DD-A1EG-01	MIB2	ENST00000489635.1	chr1	1551887:1551994:1558768:1558862:1559153:1559325,	1558769	1558862	1558796	1558796	Frame_Shift_Del	C	-	p.D46fs
LIHC	TCGA-DD-A1EG-01	MIB2	ENST00000378710.3,ENST00000505820.2,ENST00000357210.4,ENST00000360522.4,ENST00000520777.1,ENST00000487053.1,ENST00000504599.1,ENST00000511502.1,ENST00000507229.1,ENST00000518681.1	chr1	1551887:1551994:1558768:1559079:1559153:1559325,	1558769	1559079	1558796	1558796	Frame_Shift_Del	C	-	p.D46fs
LIHC	TCGA-DD-A1EG-01	MIB2	ENST00000378712.1,ENST00000479659.1,ENST00000510793.1,ENST00000355826.5	chr1	1551887:1551994:1558810:1559079:1559153:1559325,	1558811	1559079	1559006	1559006	Frame_Shift_Del	G	-	p.Q116fs
LIHC	TCGA-DD-A1EG-01	MIB2	ENST00000378710.3,ENST00000505820.2,ENST00000357210.4,ENST00000360522.4,ENST00000520777.1,ENST00000487053.1,ENST00000504599.1,ENST00000511502.1,ENST00000507229.1,ENST00000518681.1	chr1	1551887:1551994:1558768:1559079:1559153:1559325,	1558769	1559079	1559006	1559006	Frame_Shift_Del	G	-	p.Q116fs
LIHC	TCGA-DD-A1EG-01	MIB2	ENST00000502470.1	chr1	1551887:1551994:1558810:1559059:1559153:1559325,	1558811	1559059	1559006	1559006	Frame_Shift_Del	G	-	p.Q116fs
LIHC	TCGA-DD-A1EG-01	MIB2	ENST00000360522.4,ENST00000514234.1	chr1	1560665:1560808:1560925:1561033:1562029:1562134,1560665:1560808:1560925:1561033:1562216:1562309,	1560926	1561033	1560968	1560968	Frame_Shift_Del	G	-	p.G361fs
LIHC	TCGA-DD-A1EG-01	MIB2	ENST00000520777.1	chr1	1560665:1560808:1560937:1561033:1562029:1562134,	1560938	1561033	1560968	1560968	Frame_Shift_Del	G	-	p.G361fs
LIHC	TCGA-DD-A1EG-01	MIB2	ENST00000479659.1	chr1	1560665:1560808:1560925:1562134:1562216:1562309,	1560926	1562134	1560968	1560968	Frame_Shift_Del	G	-	p.G361fs
LIHC	TCGA-DD-A1EG-01	SLC35E2B	ENST00000234800.6,ENST00000378662.1	chr1	1601536:1601590:1602947:1603068:1606901:1607029,	1602948	1603068	1602976	1602976	Frame_Shift_Del	C	-	p.A228fs
LIHC	TCGA-DD-A1EG-01	CDK11A	ENST00000460465.1,ENST00000378633.1,ENST00000357760.2,ENST00000378635.3,ENST00000404249.3,ENST00000479362.1,ENST00000509982.1,ENST00000358779.5	chr1	1650796:1650894:1653034:1653150:1654146:1654270,	1653035	1653150	1653038	1653038	Frame_Shift_Del	T	-	p.D41fs
LIHC	TCGA-DD-A1EG-01	RER1	ENST00000488353.1,ENST00000378512.1,ENST00000306256.9,ENST00000605895.1,ENST00000443438.1	chr1	2328554:2328659:2330853:2330953:2332295:2332374,	2330854	2330953	2330880	2330880	Frame_Shift_Del	G	-	p.L71fs
LIHC	TCGA-DD-A1EG-01	PLCH2	ENST00000449969.1,ENST00000378486.3,ENST00000343889.4,ENST00000419816.2	chr1	2428266:2428449:2428940:2429048:2429961:2430086,	2428941	2429048	2428963	2428963	Frame_Shift_Del	G	-	p.E686fs
LIHC	TCGA-DD-A1EG-01	PRDM16	ENST00000270722.5,ENST00000378391.2,ENST00000514189.1,ENST00000441472.2,ENST00000442529.2,ENST00000378398.3	chr1	2985774:2985860:3102688:3103038:3160650:3160701,	3102689	3103038	3102939	3102939	Frame_Shift_Del	G	-	p.L96fs
LIHC	TCGA-DD-A1EG-01	ARHGEF16	ENST00000378378.4	chr1	3379629:3380236:3382711:3382757:3383731:3383901,	3382712	3382757	3382720	3382720	Frame_Shift_Del	G	-	p.L199fs
LIHC	TCGA-DD-A1EG-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410404	3410404	Frame_Shift_Del	C	-	p.A1440fs
LIHC	TCGA-DD-A1EG-01	MEGF6	ENST00000485002.2,ENST00000356575.4	chr1	3415261:3415390:3415701:3415830:3416151:3416280,	3415702	3415830	3415771	3415771	Frame_Shift_Del	C	-	p.A1009fs
LIHC	TCGA-DD-A1EG-01	MEGF6	ENST00000356575.4	chr1	3431965:3432091:3440687:3440810:3496388:3496493,	3440688	3440810	3440790	3440790	Frame_Shift_Del	G	-	p.H168fs
LIHC	TCGA-DD-A1EG-01	LRRC47	ENST00000378251.1	chr1	3700559:3700675:3701650:3701767:3703412:3703874,	3701651	3701767	3701761	3701761	Frame_Shift_Del	G	-	p.L362fs
LIHC	TCGA-DD-A1EG-01	RNF207	ENST00000492476.1,ENST00000377939.4	chr1	6271094:6271178:6271926:6272113:6272290:6272476,	6271927	6272113	6272010	6272010	Frame_Shift_Del	A	-	p.Q398fs
LIHC	TCGA-DD-A1EG-01	GPR153	ENST00000377893.2	chr1	6311397:6311590:6313777:6314207:6314609:6315074,	6313778	6314207	6313833	6313833	Frame_Shift_Del	C	-	p.G244fs
LIHC	TCGA-DD-A1EG-01	ESPN	ENST00000377828.1,ENST00000416731.1,ENST00000461727.1	chr1	6508844:6508862:6511662:6511808:6511892:6512009,6508952:6509151:6511662:6511808:6511892:6512009,	6511663	6511808	6511763	6511763	Frame_Shift_Del	G	-	p.K672fs
LIHC	TCGA-DD-A1EG-01	ESPN	ENST00000475228.1,ENST00000377828.1,ENST00000416731.1,ENST00000434576.1,ENST00000461727.1	chr1	6511717:6511808:6511892:6512156:6517243:6517323,	6511893	6512156	6512091	6512091	Frame_Shift_Del	A	-	p.K754fs
LIHC	TCGA-DD-A1EG-01	TNFRSF25	ENST00000510563.1,ENST00000502588.1	chr1	6522696:6522723:6524434:6524513:6524611:6524779,	6524435	6524513	6524508	6524508	Frame_Shift_Del	G	-	p.R158fs
LIHC	TCGA-DD-A1EG-01	PLEKHG5	ENST00000535355.1,ENST00000377732.1,ENST00000400913.1,ENST00000340850.5,ENST00000489097.1,ENST00000377737.2,ENST00000487949.1,ENST00000537245.1,ENST00000377748.1,ENST00000377728.3,ENST00000400915.3	chr1	6527564:6527632:6527884:6528646:6529101:6529301,	6527885	6528646	6528202	6528202	Frame_Shift_Del	G	-	p.P975fs
LIHC	TCGA-DD-A1EG-01	PLEKHG5	ENST00000377725.1,ENST00000544978.1	chr1	6527902:6527958:6528158:6528646:6529101:6529301,	6528159	6528646	6528202	6528202	Frame_Shift_Del	G	-	p.P975fs
LIHC	TCGA-DD-A1EG-01	PLEKHG5	ENST00000535355.1,ENST00000377732.1,ENST00000400913.1,ENST00000340850.5,ENST00000489097.1,ENST00000377737.2,ENST00000487949.1,ENST00000537245.1,ENST00000377748.1,ENST00000377728.3,ENST00000400915.3	chr1	6527564:6527632:6527884:6528646:6529101:6529301,	6527885	6528646	6528308	6528308	Frame_Shift_Del	G	-	p.P940fs
LIHC	TCGA-DD-A1EG-01	PLEKHG5	ENST00000377725.1,ENST00000544978.1	chr1	6527902:6527958:6528158:6528646:6529101:6529301,	6528159	6528646	6528308	6528308	Frame_Shift_Del	G	-	p.P940fs
LIHC	TCGA-DD-A1EG-01	ZBTB48	ENST00000435905.1	chr1	6640147:6640196:6640600:6641359:6642117:6642305,6640076:6640130:6640600:6641359:6642117:6642305,	6640601	6641359	6640765	6640765	Frame_Shift_Del	G	-	p.V32fs
LIHC	TCGA-DD-A1EG-01	ZBTB48	ENST00000435905.1	chr1	6640147:6640196:6640600:6641359:6642117:6642305,6640076:6640130:6640600:6641359:6642117:6642305,	6640601	6641359	6640835	6640835	Frame_Shift_Del	G	-	p.G56fs
LIHC	TCGA-DD-A1EG-01	ZBTB48	ENST00000435905.1	chr1	6640147:6640196:6640600:6641359:6642117:6642305,6640076:6640130:6640600:6641359:6642117:6642305,	6640601	6641359	6640904	6640904	Frame_Shift_Del	T	-	p.F80fs
LIHC	TCGA-DD-A1EG-01	ZBTB48	ENST00000488936.1	chr1	6640600:6641359:6642117:6642359:6645978:6646090,6640147:6640196:6642117:6642359:6645978:6646090,	6642118	6642359	6642337	6642337	Frame_Shift_Del	T	-	p.Y305fs
LIHC	TCGA-DD-A1EG-01	ZBTB48	ENST00000482360.1,ENST00000377674.4,ENST00000488936.1,ENST00000498342.1	chr1	6647315:6647351:6647537:6647692:6648119:6648165,	6647538	6647692	6647644	6647644	Frame_Shift_Del	G	-	p.R444fs
LIHC	TCGA-DD-A1EG-01	ZBTB48	ENST00000466813.1	chr1	6647315:6647351:6647574:6647692:6648119:6648165,	6647575	6647692	6647644	6647644	Frame_Shift_Del	G	-	p.R444fs
LIHC	TCGA-DD-A1EG-01	THAP3	ENST00000307896.6,ENST00000487819.1,ENST00000054650.4,ENST00000484669.2	chr1	6690350:6690413:6692450:6692555:6692855:6693181,	6692451	6692555	6692487	6692487	Frame_Shift_Del	G	-	p.G131fs
LIHC	TCGA-DD-A1EG-01	CAMTA1	ENST00000467404.2	chr1	6845611:6845635:6885151:6885270:6931816:6931900,6867047:6867148:6885151:6885270:6931816:6931900,	6885152	6885270	6885199	6885199	Frame_Shift_Del	A	-	p.K56fs
LIHC	TCGA-DD-A1EG-01	CAMTA1	ENST00000467404.2	chr1	6845611:6845635:6885151:6885270:6931816:6931900,6867047:6867148:6885151:6885270:6931816:6931900,	6885152	6885270	6885220	6885220	Frame_Shift_Del	C	-	p.P62fs
LIHC	TCGA-DD-A1EG-01	CAMTA1	ENST00000439411.2,ENST00000495233.1,ENST00000303635.7	chr1	7797314:7797630:7798018:7798542:7804894:7805082,	7798019	7798542	7798330	7798330	Frame_Shift_Del	A	-	p.K1324fs
LIHC	TCGA-DD-A1EG-01	PER3	ENST00000361923.2,ENST00000377532.3	chr1	7863751:7863908:7868952:7869058:7869952:7870081,	7868953	7869058	7868956	7868956	Frame_Shift_Del	C	-	p.S380fs
LIHC	TCGA-DD-A1EG-01	GPR157	ENST00000377411.4	chr1	9164590:9164693:9165544:9165739:9171334:9171429,	9165545	9165739	9165562	9165562	Frame_Shift_Del	C	-	p.V259fs
LIHC	TCGA-DD-A1EG-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10132085:10132272:10155518:10155654:10161165:10161253,	10155519	10155654	10155615	10155615	Frame_Shift_Del	C	-	p.S103fs
LIHC	TCGA-DD-A1EG-01	UBE4B	ENST00000470736.1,ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10195045:10195244:10197124:10197263:10204997:10205097,	10197125	10197263	10197175	10197175	Frame_Shift_Del	T	-	p.F514fs
LIHC	TCGA-DD-A1EG-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10209241:10209340:10211383:10211619:10218413:10218540,	10211384	10211619	10211547	10211547	Frame_Shift_Del	T	-	p.F708fs
LIHC	TCGA-DD-A1EG-01	TARDBP	ENST00000439080.2,ENST00000473869.1,ENST00000240185.3,ENST00000315091.3	chr1	11078789:11078930:11080485:11080656:11082180:11082234,	11080486	11080656	11080633	11080633	Frame_Shift_Del	T	-	p.F231fs
LIHC	TCGA-DD-A1EG-01	SRM	ENST00000376957.2	chr1	11114645:11114942:11115018:11115141:11115837:11115877,	11115019	11115141	11115120	11115120	Frame_Shift_Del	C	-	p.V263fs
LIHC	TCGA-DD-A1EG-01	SRM	ENST00000376957.2	chr1	11115018:11115141:11115837:11115983:11116067:11116151,	11115838	11115983	11115886	11115886	Frame_Shift_Del	G	-	p.P239fs
LIHC	TCGA-DD-A1EG-01	EXOSC10	ENST00000304457.7	chr1	11132143:11132228:11134287:11134383:11136898:11137005,	11134288	11134383	11134294	11134294	Frame_Shift_Del	A	-	p.F692fs
LIHC	TCGA-DD-A1EG-01	EXOSC10	ENST00000544779.1,ENST00000304457.7,ENST00000376936.4	chr1	11141138:11141295:11142744:11142935:11147504:11147648,	11142745	11142935	11142885	11142885	Frame_Shift_Del	C	-	p.G380fs
LIHC	TCGA-DD-A1EG-01	MTOR	ENST00000361445.4	chr1	11273455:11273623:11276204:11276291:11288724:11288975,	11276205	11276291	11276228	11276228	Frame_Shift_Del	C	-	p.D1032fs
LIHC	TCGA-DD-A1EG-01	MTOR	ENST00000361445.4	chr1	11300359:11300604:11301609:11301738:11303170:11303357,	11301610	11301738	11301616	11301616	Frame_Shift_Del	C	-	p.G512fs
LIHC	TCGA-DD-A1EG-01	MTOR	ENST00000361445.4	chr1	11316048:11316249:11316989:11317222:11318541:11318650,	11316990	11317222	11317016	11317016	Frame_Shift_Del	G	-	p.R160fs
LIHC	TCGA-DD-A1EG-01	UBIAD1	ENST00000483738.1	chr1	11333990:11334117:11345700:11345789:11354929:11355221,	11345701	11345789	11345750	11345750	Frame_Shift_Del	T	-	p.T193fs
LIHC	TCGA-DD-A1EG-01	C1orf167	ENST00000444493.1,ENST00000433342.1,ENST00000312793.5	chr1	11838987:11839137:11839858:11840067:11842245:11842390,	11839859	11840067	11839945	11839945	Frame_Shift_Del	G	-	p.R937fs
LIHC	TCGA-DD-A1EG-01	MTHFR	ENST00000376583.3,ENST00000376590.3,ENST00000376585.1,ENST00000376592.1	chr1	11854414:11854595:11854785:11854920:11855154:11855405,	11854786	11854920	11854795	11854795	Frame_Shift_Del	T	-	p.N386fs
LIHC	TCGA-DD-A1EG-01	PLOD1	ENST00000376369.3,ENST00000485046.1,ENST00000196061.4,ENST00000465920.1	chr1	12014886:12014950:12016973:12017071:12017898:12018000,	12016974	12017071	12017034	12017034	Frame_Shift_Del	C	-	p.T235fs
LIHC	TCGA-DD-A1EG-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12058826:12058935:12059044:12059152:12061457:12061611,	12059045	12059152	12059082	12059082	Frame_Shift_Del	C	-	p.S249fs
LIHC	TCGA-DD-A1EG-01	TNFRSF8	ENST00000263932.2,ENST00000514649.1,ENST00000413146.2,ENST00000417814.2,ENST00000479933.2	chr1	12186007:12186109:12186239:12186293:12195644:12195670,	12186240	12186293	12186270	12186270	Frame_Shift_Del	C	-	p.S429fs
LIHC	TCGA-DD-A1EG-01	VPS13D	ENST00000356315.4,ENST00000460333.1,ENST00000487188.1,ENST00000011700.6,ENST00000358136.3	chr1	12383762:12383837:12387704:12387911:12389885:12389975,	12387705	12387911	12387713	12387713	Frame_Shift_Del	A	-	p.K2668fs
LIHC	TCGA-DD-A1EG-01	VPS13D	ENST00000356315.4,ENST00000460333.1,ENST00000011700.6,ENST00000358136.3	chr1	12409220:12409431:12414030:12414278:12415955:12416147,	12414031	12414278	12414184	12414184	Frame_Shift_Del	T	-	p.D3195fs
LIHC	TCGA-DD-A1EG-01	VPS13D	ENST00000543766.1,ENST00000481484.1	chr1	12463877:12464026:12475139:12475274:12476712:12476880,12469923:12469947:12475139:12475274:12476712:12476880,	12475140	12475274	12475145	12475145	Frame_Shift_Del	A	-	p.L4012fs
LIHC	TCGA-DD-A1EG-01	DHRS3	ENST00000376223.2	chr1	12632755:12632881:12638745:12638984:12639320:12639440,	12638746	12638984	12638912	12638912	Frame_Shift_Del	C	-	p.A178fs
LIHC	TCGA-DD-A1EG-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14105018	14105018	Frame_Shift_Del	C	-	p.A243fs
LIHC	TCGA-DD-A1EG-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14105732	14105732	Frame_Shift_Del	A	-	p.E481fs
LIHC	TCGA-DD-A1EG-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107361	14107361	Frame_Shift_Del	C	-	p.S1024fs
LIHC	TCGA-DD-A1EG-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108461	14108461	Frame_Shift_Del	A	-	p.K1391fs
LIHC	TCGA-DD-A1EG-01	PRDM2	ENST00000505823.1,ENST00000503842.1	chr1	14099572:14099683:14142921:14143065:14149653:14149914,	14142922	14143065	14142953	14142953	Frame_Shift_Del	C	-	p.P1691fs
LIHC	TCGA-DD-A1EG-01	FHAD1	ENST00000375998.4,ENST00000375999.3,ENST00000358897.4,ENST00000375996.2,ENST00000375997.4,ENST00000417793.1,ENST00000401090.2	chr1	15639552:15639683:15642873:15642963:15644319:15644424,	15642874	15642963	15642905	15642905	Frame_Shift_Del	A	-	p.E401fs
LIHC	TCGA-DD-A1EG-01	PLEKHM2	ENST00000375799.3,ENST00000375793.2	chr1	16057686:16057752:16058383:16058543:16058844:16059024,	16058384	16058543	16058430	16058430	Frame_Shift_Del	C	-	p.P838fs
LIHC	TCGA-DD-A1EG-01	TMEM82	ENST00000375782.1	chr1	16070654:16071075:16073361:16073549:16074040:16074477,	16073362	16073549	16073465	16073465	Frame_Shift_Del	C	-	p.D287fs
LIHC	TCGA-DD-A1EG-01	FBLIM1	ENST00000400773.1,ENST00000332305.5,ENST00000375771.1,ENST00000375766.3	chr1	16096903:16097073:16101112:16101291:16103664:16103782,	16101113	16101291	16101183	16101183	Frame_Shift_Del	C	-	p.A261fs
LIHC	TCGA-DD-A1EG-01	SPEN	ENST00000442985.1,ENST00000375759.3	chr1	16245420:16245546:16245898:16246012:16247364:16247401,	16245899	16246012	16245944	16245944	Frame_Shift_Del	G	-	p.G523fs
LIHC	TCGA-DD-A1EG-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16375614:16375740:16376112:16376197:16376309:16376411,	16376113	16376197	16376181	16376181	Frame_Shift_Del	T	-	p.F285fs
LIHC	TCGA-DD-A1EG-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16375614:16375740:16376112:16376197:16376309:16376411,	16376113	16376197	16376195	16376195	Frame_Shift_Del	G	-	p.L288fs
LIHC	TCGA-DD-A1EG-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16377972:16378042:16378204:16378315:16378692:16378906,	16378205	16378315	16378216	16378216	Frame_Shift_Del	G	-	p.G437fs
LIHC	TCGA-DD-A1EG-01	CLCNKB	ENST00000375679.4,ENST00000431772.1,ENST00000375667.3	chr1	16378817:16378906:16380133:16380267:16381929:16382018,	16380134	16380267	16380249	16380249	Frame_Shift_Del	C	-	p.P580fs
LIHC	TCGA-DD-A1EG-01	FAM131C	ENST00000375662.4,ENST00000494078.1	chr1	16385988:16386099:16386363:16386546:16388593:16388687,	16386364	16386546	16386509	16386509	Frame_Shift_Del	G	-	p.P102fs
LIHC	TCGA-DD-A1EG-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461054:16461062:16461530:16461684:16462149:16462265,	16461531	16461684	16461617	16461617	Frame_Shift_Del	G	-	p.P499fs
LIHC	TCGA-DD-A1EG-01	ARHGEF19	ENST00000270747.3	chr1	16534438:16534720:16535137:16535578:16538996:16539104,	16535138	16535578	16535271	16535271	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-DD-A1EG-01	SZRD1	ENST00000475554.1,ENST00000472351.1,ENST00000401088.4	chr1	16693759:16693803:16719722:16719977:16721532:16721565,16717869:16717919:16719722:16719977:16721532:16721565,	16719723	16719977	16719787	16719787	Frame_Shift_Del	C	-	p.P58fs
LIHC	TCGA-DD-A1EG-01	SZRD1	ENST00000375590.3,ENST00000492354.1	chr1	16717869:16717919:16719725:16719977:16721532:16721565,16693759:16693803:16719725:16719977:16721532:16721565,	16719726	16719977	16719787	16719787	Frame_Shift_Del	C	-	p.P58fs
LIHC	TCGA-DD-A1EG-01	CROCC	ENST00000375541.5	chr1	17250819:17250974:17256340:17256526:17256618:17256702,	17256341	17256526	17256415	17256415	Frame_Shift_Del	G	-	p.V142fs
LIHC	TCGA-DD-A1EG-01	CROCC	ENST00000375541.5,ENST00000445545.2,ENST00000492631.1,ENST00000467938.1	chr1	17265403:17265637:17266388:17266588:17270594:17270777,	17266389	17266588	17266398	17266398	Frame_Shift_Del	G	-	p.G540fs
LIHC	TCGA-DD-A1EG-01	MFAP2	ENST00000438542.1	chr1	17303391:17303418:17303603:17303690:17304731:17304771,	17303604	17303690	17303642	17303642	Frame_Shift_Del	G	-	p.P30fs
LIHC	TCGA-DD-A1EG-01	MFAP2	ENST00000478684.1,ENST00000476788.1,ENST00000492598.1,ENST00000375535.3	chr1	17303391:17303418:17303603:17303693:17304731:17304771,	17303604	17303693	17303642	17303642	Frame_Shift_Del	G	-	p.P30fs
LIHC	TCGA-DD-A1EG-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17747218:17747324:17748698:17748787:17749200:17749332,	17748699	17748787	17748747	17748747	Frame_Shift_Del	C	-	p.G232fs
LIHC	TCGA-DD-A1EG-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17749200:17749332:17752036:17752180:17755601:17755695,	17752037	17752180	17752146	17752146	Frame_Shift_Del	C	-	p.G138fs
LIHC	TCGA-DD-A1EG-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17752036:17752180:17755601:17755695:17764725:17765018,	17755602	17755695	17755650	17755650	Frame_Shift_Del	C	-	p.A111fs
LIHC	TCGA-DD-A1EG-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17752036:17752180:17755601:17755695:17764725:17765018,	17755602	17755695	17755654	17755654	Frame_Shift_Del	A	-	p.F109fs
LIHC	TCGA-DD-A1EG-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000466782.1,ENST00000434513.1,ENST00000475356.1,ENST00000167825.4,ENST00000452522.1	chr1	17966696:17966797:17975048:17975170:17981130:17981160,	17975049	17975170	17975103	17975103	Frame_Shift_Del	C	-	p.A776fs
LIHC	TCGA-DD-A1EG-01	PAX7	ENST00000420770.2	chr1	19029587:19029790:19062125:19062372:19071307:19075360,	19062126	19062372	19062159	19062159	Frame_Shift_Del	C	-	p.P398fs
LIHC	TCGA-DD-A1EG-01	ALDH4A1	ENST00000290597.5,ENST00000538839.1,ENST00000375341.3,ENST00000538309.1	chr1	19211966:19212122:19212957:19213005:19215855:19215948,	19212958	19213005	19213000	19213000	Frame_Shift_Del	A	-	p.F85fs
LIHC	TCGA-DD-A1EG-01	UBR4	ENST00000375226.2,ENST00000375254.3,ENST00000375267.2,ENST00000375217.2	chr1	19436873:19436958:19437235:19437326:19439017:19439181,	19437236	19437326	19437307	19437307	Frame_Shift_Del	G	-	p.Q3942fs
LIHC	TCGA-DD-A1EG-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.P2802fs
LIHC	TCGA-DD-A1EG-01	EMC1	ENST00000375199.3,ENST00000477853.1,ENST00000375208.3	chr1	19549889:19550063:19553806:19553944:19557337:19557457,	19553807	19553944	19553920	19553920	Frame_Shift_Del	C	-	p.E697fs
LIHC	TCGA-DD-A1EG-01	EMC1	ENST00000375199.3,ENST00000477853.1,ENST00000375208.3	chr1	19557754:19557916:19559117:19559267:19559429:19559629,	19559118	19559267	19559153	19559153	Frame_Shift_Del	G	-	p.H583fs
LIHC	TCGA-DD-A1EG-01	EMC1	ENST00000375208.3	chr1	19570443:19570509:19571399:19571524:19577908:19578003,19570113:19570201:19571399:19571524:19577908:19578003,	19571400	19571524	19571474	19571474	Frame_Shift_Del	G	-	p.P49fs
LIHC	TCGA-DD-A1EG-01	EMC1	ENST00000475079.1	chr1	19570443:19570509:19571232:19571524:19577908:19578003,	19571233	19571524	19571474	19571474	Frame_Shift_Del	G	-	p.P49fs
LIHC	TCGA-DD-A1EG-01	AKR7A2	ENST00000235835.3,ENST00000481966.1,ENST00000330072.5	chr1	19630778:19630880:19632511:19632641:19633495:19633595,	19632512	19632641	19632563	19632563	Frame_Shift_Del	G	-	p.P289fs
LIHC	TCGA-DD-A1EG-01	CAPZB	ENST00000433834.1,ENST00000401084.2,ENST00000375142.1,ENST00000264202.6,ENST00000482808.1,ENST00000489607.1,ENST00000375144.1,ENST00000413711.1,ENST00000264203.3	chr1	19705033:19705147:19711998:19712120:19746154:19746244,	19711999	19712120	19712047	19712047	Frame_Shift_Del	C	-	p.G82fs
LIHC	TCGA-DD-A1EG-01	PLA2G2F	ENST00000375102.3	chr1	20466658:20466711:20469938:20470083:20471072:20471182,	20469939	20470083	20470048	20470048	Frame_Shift_Del	G	-	p.L93fs
LIHC	TCGA-DD-A1EG-01	DDOST	ENST00000415136.2,ENST00000375048.3,ENST00000602624.2	chr1	20978546:20979021:20979113:20979220:20979343:20979464,	20979114	20979220	20979147	20979147	Frame_Shift_Del	C	-	p.R396fs
LIHC	TCGA-DD-A1EG-01	KIF17	ENST00000490034.1,ENST00000375044.1,ENST00000247986.2,ENST00000400463.3,ENST00000477167.1	chr1	20990508:20991255:20992706:20992824:20996913:20996981,	20992707	20992824	20992778	20992778	Frame_Shift_Del	T	-	p.N947fs
LIHC	TCGA-DD-A1EG-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21155639:21155765:21167348:21167521:21175907:21176023,	21167349	21167521	21167473	21167473	Frame_Shift_Del	C	-	p.V1263fs
LIHC	TCGA-DD-A1EG-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226197	21226197	Frame_Shift_Del	A	-	p.F614fs
LIHC	TCGA-DD-A1EG-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268062	21268062	Frame_Shift_Del	T	-	p.I479fs
LIHC	TCGA-DD-A1EG-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268562	21268562	Frame_Shift_Del	G	-	p.P312fs
LIHC	TCGA-DD-A1EG-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268633	21268633	Frame_Shift_Del	G	-	p.P288fs
LIHC	TCGA-DD-A1EG-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268781	21268781	Frame_Shift_Del	G	-	p.P239fs
LIHC	TCGA-DD-A1EG-01	EIF4G3	ENST00000411888.1	chr1	21306826:21306941:21307540:21307720:21324093:21324126,21306826:21306941:21307540:21307720:21329205:21329280,21306826:21306941:21307540:21307720:21327691:21327805,	21307541	21307720	21307682	21307682	Frame_Shift_Del	G	-	p.T30fs
LIHC	TCGA-DD-A1EG-01	RAP1GAP	ENST00000374763.2	chr1	21929296:21929406:21930150:21930405:21932558:21932690,	21930151	21930405	21930224	21930224	Frame_Shift_Del	G	-	p.P537fs
LIHC	TCGA-DD-A1EG-01	HSPG2	ENST00000374695.3	chr1	22169789:22169931:22170640:22170792:22172600:22172748,	22170641	22170792	22170777	22170777	Frame_Shift_Del	G	-	p.P2828fs
LIHC	TCGA-DD-A1EG-01	HSPG2	ENST00000430507.1,ENST00000374695.3	chr1	22175385:22175524:22176533:22176685:22176855:22176991,	22176534	22176685	22176669	22176669	Frame_Shift_Del	G	-	p.P2437fs
LIHC	TCGA-DD-A1EG-01	HSPG2	ENST00000430507.1,ENST00000374695.3	chr1	22178038:22178190:22178283:22178419:22178580:22178625,	22178284	22178419	22178299	22178299	Frame_Shift_Del	C	-	p.A2331fs
LIHC	TCGA-DD-A1EG-01	CDC42	ENST00000315554.8,ENST00000411827.1,ENST00000344548.3,ENST00000400259.1	chr1	22404921:22405076:22408214:22408287:22412931:22413041,	22408215	22408287	22408273	22408273	Frame_Shift_Del	T	-	p.L55fs
LIHC	TCGA-DD-A1EG-01	ZBTB40	ENST00000375647.4,ENST00000404138.1,ENST00000400239.2	chr1	22817892:22818026:22827984:22828177:22828791:22828934,	22827985	22828177	22828122	22828122	Frame_Shift_Del	A	-	p.V323fs
LIHC	TCGA-DD-A1EG-01	KDM1A	ENST00000542151.1,ENST00000400181.4	chr1	23345987:23346440:23356961:23357127:23370919:23370979,	23356962	23357127	23357073	23357073	Frame_Shift_Del	C	-	p.P156fs
LIHC	TCGA-DD-A1EG-01	KDM1A	ENST00000481879.1,ENST00000356634.3,ENST00000542151.1,ENST00000400181.4	chr1	23376917:23377013:23380253:23380332:23381561:23381654,	23380254	23380332	23380275	23380275	Frame_Shift_Del	C	-	p.P245fs
LIHC	TCGA-DD-A1EG-01	KDM1A	ENST00000356634.3,ENST00000542151.1,ENST00000400181.4	chr1	23397717:23397852:23398616:23398690:23399784:23399896,	23398617	23398690	23398683	23398683	Frame_Shift_Del	C	-	p.P540fs
LIHC	TCGA-DD-A1EG-01	ASAP3	ENST00000437606.2,ENST00000495646.1,ENST00000336689.3	chr1	23758188:23758411:23759569:23759765:23759917:23760025,	23759570	23759765	23759635	23759635	Frame_Shift_Del	G	-	p.P754fs
LIHC	TCGA-DD-A1EG-01	ASAP3	ENST00000437606.2,ENST00000484418.1,ENST00000492982.2,ENST00000336689.3	chr1	23762343:23762521:23763052:23763147:23763403:23763461,	23763053	23763147	23763131	23763131	Frame_Shift_Del	C	-	p.G498fs
LIHC	TCGA-DD-A1EG-01	PITHD1	ENST00000374524.1,ENST00000246151.4	chr1	24112164:24112269:24112804:24112913:24113764:24114722,	24112805	24112913	24112881	24112881	Frame_Shift_Del	T	-	p.F168fs
LIHC	TCGA-DD-A1EG-01	LYPLA2	ENST00000495365.1,ENST00000374502.3,ENST00000374503.3,ENST00000400061.1,ENST00000374505.2	chr1	24117710:24117740:24119146:24119250:24119497:24119529,	24119147	24119250	24119197	24119197	Frame_Shift_Del	C	-	p.P9fs
LIHC	TCGA-DD-A1EG-01	MYOM3	ENST00000330966.7,ENST00000374434.3,ENST00000329601.7	chr1	24400649:24400759:24401808:24401965:24402648:24402763,	24401809	24401965	24401840	24401840	Frame_Shift_Del	G	-	p.Q944fs
LIHC	TCGA-DD-A1EG-01	IFNLR1	ENST00000374421.3,ENST00000327575.2,ENST00000374418.3	chr1	24495906:24496091:24507220:24507344:24513680:24513738,	24507221	24507344	24507252	24507252	Frame_Shift_Del	G	-	p.Q51fs
LIHC	TCGA-DD-A1EG-01	STPG1	ENST00000337248.4,ENST00000440416.1,ENST00000468303.1,ENST00000003583.8,ENST00000374409.1	chr1	24687340:24687531:24696163:24696329:24700191:24700300,	24696164	24696329	24696258	24696258	Frame_Shift_Del	T	-	p.T215fs
LIHC	TCGA-DD-A1EG-01	RCAN3	ENST00000436717.2	chr1	24829386:24829640:24840803:24841057:24857707:24857881,	24840804	24841057	24840945	24840945	Frame_Shift_Del	T	-	p.I28fs
LIHC	TCGA-DD-A1EG-01	SRRM1	ENST00000479034.1,ENST00000447431.2,ENST00000323848.9,ENST00000374389.4	chr1	24995613:24996078:24996610:24996806:24997876:24997960,	24996611	24996806	24996690	24996690	Frame_Shift_Del	A	-	p.K763fs
LIHC	TCGA-DD-A1EG-01	MAN1C1	ENST00000263979.3,ENST00000374332.4,ENST00000473891.1	chr1	26012992:26013027:26073158:26073274:26075745:26075826,	26073159	26073274	26073241	26073241	Frame_Shift_Del	G	-	p.K240fs
LIHC	TCGA-DD-A1EG-01	MTFR1L	ENST00000531361.1	chr1	26150134:26150239:26152792:26152902:26155999:26156321,	26152793	26152902	26152896	26152896	Frame_Shift_Del	G	-	p.R78fs
LIHC	TCGA-DD-A1EG-01	AUNIP	ENST00000374298.3	chr1	26161512:26162337:26163903:26164045:26185770:26185903,	26163904	26164045	26163918	26163918	Frame_Shift_Del	A	-	p.F69fs
LIHC	TCGA-DD-A1EG-01	STMN1	ENST00000357865.2,ENST00000399728.1,ENST00000455785.2,ENST00000374291.1	chr1	26227231:26227578:26227981:26228173:26230131:26230304,	26227982	26228173	26228074	26228074	Frame_Shift_Del	T	-	p.M96fs
LIHC	TCGA-DD-A1EG-01	PAFAH2	ENST00000374284.1,ENST00000374282.3,ENST00000441420.1,ENST00000439092.2	chr1	26314721:26314818:26315938:26316092:26317217:26317354,	26315939	26316092	26316020	26316020	Frame_Shift_Del	G	-	p.R55fs
LIHC	TCGA-DD-A1EG-01	CNKSR1	ENST00000482227.1,ENST00000361530.6,ENST00000531191.1,ENST00000528001.1,ENST00000374253.5	chr1	26510219:26510321:26510561:26510632:26510704:26510778,	26510562	26510632	26510584	26510584	Frame_Shift_Del	C	-	p.S35fs
LIHC	TCGA-DD-A1EG-01	CEP85	ENST00000252992.4,ENST00000476272.2	chr1	26566252:26566329:26570656:26570809:26581661:26581841,	26570657	26570809	26570676	26570676	Frame_Shift_Del	G	-	p.K25fs
LIHC	TCGA-DD-A1EG-01	ZNF683	ENST00000349618.3,ENST00000374204.1,ENST00000403843.1,ENST00000436292.1	chr1	26689516:26689645:26691022:26691717:26694083:26694138,	26691023	26691717	26691093	26691093	Frame_Shift_Del	T	-	p.K316fs
LIHC	TCGA-DD-A1EG-01	DHDDS	ENST00000360009.2,ENST00000434391.2,ENST00000236342.7,ENST00000416052.1	chr1	26772854:26772923:26774049:26774151:26784281:26784396,	26774050	26774151	26774111	26774111	Frame_Shift_Del	G	-	p.E168fs
LIHC	TCGA-DD-A1EG-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101438	27101438	Frame_Shift_Del	C	-	p.P1576fs
LIHC	TCGA-DD-A1EG-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440699	27440699	Frame_Shift_Del	C	-	p.G144fs
LIHC	TCGA-DD-A1EG-01	WDTC1	ENST00000491239.2	chr1	27627716:27627952:27630111:27631684:27632676:27632941,	27630112	27631684	27631615	27631615	Frame_Shift_Del	C	-	p.H589fs
LIHC	TCGA-DD-A1EG-01	WDTC1	ENST00000361771.3,ENST00000319394.3	chr1	27630111:27630286:27631491:27631684:27632676:27632763,	27631492	27631684	27631615	27631615	Frame_Shift_Del	C	-	p.H589fs
LIHC	TCGA-DD-A1EG-01	WDTC1	ENST00000447062.2	chr1	27630111:27630286:27631549:27631684:27632676:27632763,	27631550	27631684	27631615	27631615	Frame_Shift_Del	C	-	p.H589fs
LIHC	TCGA-DD-A1EG-01	SYTL1	ENST00000483926.1,ENST00000485269.1,ENST00000543823.1,ENST00000496001.1,ENST00000318074.5	chr1	27676879:27676976:27677284:27677443:27677748:27677827,	27677285	27677443	27677346	27677346	Frame_Shift_Del	A	-	p.E356fs
LIHC	TCGA-DD-A1EG-01	WASF2	ENST00000430629.2	chr1	27734690:27734840:27736185:27736700:27739065:27739221,	27736186	27736700	27736308	27736308	Frame_Shift_Del	G	-	p.P406fs
LIHC	TCGA-DD-A1EG-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.K586fs
LIHC	TCGA-DD-A1EG-01	THEMIS2	ENST00000373925.1	chr1	28203194:28203239:28206154:28206565:28208481:28208588,28203194:28203239:28206154:28206565:28211805:28211928,	28206155	28206565	28206279	28206279	Frame_Shift_Del	G	-	p.E120fs
LIHC	TCGA-DD-A1EG-01	RPA2	ENST00000373909.3	chr1	28233691:28233793:28240573:28240680:28241137:28241257,	28240574	28240680	28240614	28240614	Frame_Shift_Del	C	-	p.G26fs
LIHC	TCGA-DD-A1EG-01	EYA3	ENST00000373871.3,ENST00000436342.2,ENST00000471498.1,ENST00000545175.1	chr1	28343664:28343750:28354299:28354437:28362054:28362168,	28354300	28354437	28354326	28354326	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A1EG-01	EYA3	ENST00000373863.3,ENST00000373871.3,ENST00000436342.2,ENST00000540618.1,ENST00000471498.1	chr1	28369081:28369161:28374893:28374937:28384504:28384598,	28374894	28374937	28374929	28374929	Frame_Shift_Del	T	-	p.K14fs
LIHC	TCGA-DD-A1EG-01	DNAJC8	ENST00000489277.1,ENST00000263697.4	chr1	28527766:28527881:28530257:28530333:28531768:28531817,	28530258	28530333	28530281	28530281	Frame_Shift_Del	T	-	p.R206fs
LIHC	TCGA-DD-A1EG-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792195:28792360:28792892:28793279:28800065:28800663,	28792893	28793279	28793078	28793078	Frame_Shift_Del	C	-	p.P208fs
LIHC	TCGA-DD-A1EG-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792195:28792360:28792892:28793279:28800065:28800663,	28792893	28793279	28793228	28793228	Frame_Shift_Del	C	-	p.P259fs
LIHC	TCGA-DD-A1EG-01	GMEB1	ENST00000373816.1,ENST00000480454.1,ENST00000294409.2,ENST00000361872.4	chr1	29023438:29023596:29028949:29029081:29030703:29030841,	29028950	29029081	29029076	29029076	Frame_Shift_Del	T	-	p.I242fs
LIHC	TCGA-DD-A1EG-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29068966	29068966	Frame_Shift_Del	C	-	p.P62fs
LIHC	TCGA-DD-A1EG-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069111	29069111	Frame_Shift_Del	C	-	p.A110fs
LIHC	TCGA-DD-A1EG-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069523	29069523	Frame_Shift_Del	A	-	p.A247fs
LIHC	TCGA-DD-A1EG-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069581	29069581	Frame_Shift_Del	C	-	p.P268fs
LIHC	TCGA-DD-A1EG-01	EPB41	ENST00000347529.3	chr1	29313959:29314417:29319841:29320054:29323726:29323831,29313959:29314417:29319841:29320054:29338376:29338419,	29319842	29320054	29319988	29319988	Frame_Shift_Del	A	-	p.R205fs
LIHC	TCGA-DD-A1EG-01	EPB41	ENST00000347529.3	chr1	29313959:29314417:29319841:29320054:29323726:29323831,29313959:29314417:29319841:29320054:29338376:29338419,	29319842	29320054	29320014	29320014	Frame_Shift_Del	T	-	p.V214fs
LIHC	TCGA-DD-A1EG-01	EPB41	ENST00000490308.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373798.1,ENST00000356093.2	chr1	29391493:29391670:29424318:29424447:29438879:29438960,29391493:29391670:29424318:29424447:29435847:29435870,	29424319	29424447	29424432	29424432	Frame_Shift_Del	T	-	p.T766fs
LIHC	TCGA-DD-A1EG-01	SRSF4	ENST00000373795.4,ENST00000466448.1,ENST00000497015.1	chr1	29481383:29481422:29485885:29485998:29486886:29486981,	29485886	29485998	29485956	29485956	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-DD-A1EG-01	ZCCHC17	ENST00000373714.1,ENST00000344147.5,ENST00000490049.1	chr1	31769882:31769922:31791955:31792013:31810021:31810122,31782890:31783011:31791955:31792013:31810021:31810122,	31791956	31792013	31791989	31791989	Frame_Shift_Del	A	-	p.K34fs
LIHC	TCGA-DD-A1EG-01	FABP3	ENST00000497275.1,ENST00000373713.2,ENST00000482018.1	chr1	31838737:31838786:31840239:31840341:31842231:31842404,	31840240	31840341	31840315	31840315	Frame_Shift_Del	T	-	p.K91fs
LIHC	TCGA-DD-A1EG-01	TINAGL1	ENST00000537531.1	chr1	32042168:32042196:32042734:32043059:32044804:32044868,32042168:32042196:32042734:32043059:32048749:32048842,	32042735	32043059	32043043	32043043	Frame_Shift_Del	T	-	p.P98fs
LIHC	TCGA-DD-A1EG-01	PEF1	ENST00000440872.2	chr1	32100434:32100544:32100822:32101123:32110441:32110474,	32100823	32101123	32100881	32100881	Frame_Shift_Del	G	-	p.P89fs
LIHC	TCGA-DD-A1EG-01	COL16A1	ENST00000271069.6,ENST00000470799.1,ENST00000373672.3,ENST00000488128.2,ENST00000482910.1	chr1	32127934:32127988:32128187:32128259:32130772:32130835,	32128188	32128259	32128216	32128216	Frame_Shift_Del	G	-	p.P1200fs
LIHC	TCGA-DD-A1EG-01	COL16A1	ENST00000479100.1	chr1	32134402:32134456:32136156:32136247:32137215:32137260,	32136157	32136247	32136240	32136240	Frame_Shift_Del	G	-	p.P1053fs
LIHC	TCGA-DD-A1EG-01	COL16A1	ENST00000271069.6,ENST00000373672.3	chr1	32134402:32134456:32136202:32136247:32137215:32137260,	32136203	32136247	32136240	32136240	Frame_Shift_Del	G	-	p.P1053fs
LIHC	TCGA-DD-A1EG-01	SPOCD1	ENST00000360482.2,ENST00000373648.2	chr1	32256580:32256853:32257815:32258002:32258278:32258368,32256024:32256892:32257815:32258002:32258278:32258368,	32257816	32258002	32257849	32257849	Frame_Shift_Del	G	-	p.L977fs
LIHC	TCGA-DD-A1EG-01	SPOCD1	ENST00000533231.1,ENST00000360482.2,ENST00000257100.3,ENST00000531039.1	chr1	32264042:32264202:32265001:32265086:32265409:32265464,	32265002	32265086	32265048	32265048	Frame_Shift_Del	C	-	p.V608fs
LIHC	TCGA-DD-A1EG-01	SPOCD1	ENST00000533231.1,ENST00000360482.2,ENST00000528791.1,ENST00000257100.3	chr1	32265616:32265742:32266041:32266218:32267264:32267303,	32266042	32266218	32266058	32266058	Frame_Shift_Del	C	-	p.G529fs
LIHC	TCGA-DD-A1EG-01	SPOCD1	ENST00000360482.2,ENST00000373648.2	chr1	32267264:32267306:32279551:32280973:32281561:32281580,	32279552	32280973	32280271	32280271	Frame_Shift_Del	C	-	p.A222fs
LIHC	TCGA-DD-A1EG-01	TMEM39B	ENST00000476968.1,ENST00000472503.1,ENST00000427288.1,ENST00000336294.5,ENST00000498613.1,ENST00000468135.1,ENST00000487305.1,ENST00000466321.1	chr1	32541267:32541423:32542764:32542919:32557275:32557345,32542363:32542447:32542764:32542919:32557275:32557345,	32542765	32542919	32542775	32542775	Frame_Shift_Del	G	-	p.R34fs
LIHC	TCGA-DD-A1EG-01	KPNA6	ENST00000373625.3,ENST00000537234.1,ENST00000545542.1,ENST00000469790.1	chr1	32623867:32623962:32625000:32625132:32626215:32626304,	32625001	32625132	32625081	32625081	Frame_Shift_Del	C	-	p.V169fs
LIHC	TCGA-DD-A1EG-01	DCDC2B	ENST00000409358.1	chr1	32677361:32677438:32677670:32677802:32678090:32678237,	32677671	32677802	32677699	32677699	Frame_Shift_Del	C	-	p.P143fs
LIHC	TCGA-DD-A1EG-01	EIF3I	ENST00000489353.1	chr1	32690010:32690076:32691749:32691921:32692003:32692073,	32691750	32691921	32691869	32691869	Frame_Shift_Del	G	-	p.M116fs
LIHC	TCGA-DD-A1EG-01	EIF3I	ENST00000471486.1,ENST00000373586.1	chr1	32690010:32690076:32691771:32691921:32692003:32692073,	32691772	32691921	32691869	32691869	Frame_Shift_Del	G	-	p.M116fs
LIHC	TCGA-DD-A1EG-01	LCK	ENST00000355928.3,ENST00000476457.1,ENST00000495610.2,ENST00000469765.1,ENST00000482949.1	chr1	32716918:32716972:32739925:32740035:32740337:32740419,	32739926	32740035	32739954	32739954	Frame_Shift_Del	C	-	p.H8fs
LIHC	TCGA-DD-A1EG-01	HDAC1	ENST00000476391.1,ENST00000373541.2,ENST00000471488.1,ENST00000373548.3	chr1	32797690:32797843:32798301:32798350:32798617:32798680,	32798302	32798350	32798319	32798319	Frame_Shift_Del	A	-	p.K464fs
LIHC	TCGA-DD-A1EG-01	ZBTB8OS	ENST00000479075.1,ENST00000483138.1,ENST00000478041.1,ENST00000473383.1,ENST00000373506.3,ENST00000468695.1,ENST00000465588.1,ENST00000476493.1	chr1	33093108:33093145:33099245:33099328:33099551:33099662,33097427:33097480:33099245:33099328:33099551:33099662,	33099246	33099328	33099295	33099295	Frame_Shift_Del	A	-	p.L105fs
LIHC	TCGA-DD-A1EG-01	RBBP4	ENST00000458695.2,ENST00000414241.3,ENST00000373493.5,ENST00000373485.1	chr1	33117514:33117662:33133825:33133999:33134339:33134455,33123027:33123173:33133825:33133999:33134339:33134455,	33133826	33133999	33133854	33133854	Frame_Shift_Del	A	-	p.G113fs
LIHC	TCGA-DD-A1EG-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236702	33236702	Frame_Shift_Del	C	-	p.A641fs
LIHC	TCGA-DD-A1EG-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237375	33237375	Frame_Shift_Del	G	-	p.K865fs
LIHC	TCGA-DD-A1EG-01	ZNF362	ENST00000373428.5,ENST00000539719.1	chr1	33741948:33742195:33745724:33746058:33747187:33747412,	33745725	33746058	33745729	33745729	Frame_Shift_Del	G	-	p.L118fs
LIHC	TCGA-DD-A1EG-01	ZSCAN20	ENST00000361328.3	chr1	33956624:33957302:33958786:33959215:33959817:33962107,	33958787	33959215	33959019	33959019	Frame_Shift_Del	C	-	p.C559fs
LIHC	TCGA-DD-A1EG-01	ZMYM1	ENST00000359858.4,ENST00000417119.1,ENST00000476269.1,ENST00000373330.1,ENST00000488455.1	chr1	35544991:35545043:35561419:35561492:35562917:35563079,35559514:35559610:35561419:35561492:35562917:35563079,35559514:35559684:35561419:35561492:35562917:35563079,	35561420	35561492	35561465	35561465	Frame_Shift_Del	A	-	p.K48fs
LIHC	TCGA-DD-A1EG-01	ZMYM1	ENST00000359858.4,ENST00000417119.1,ENST00000476269.1,ENST00000373330.1,ENST00000488455.1	chr1	35544991:35545043:35561419:35561492:35562917:35563079,35559514:35559610:35561419:35561492:35562917:35563079,35559514:35559684:35561419:35561492:35562917:35563079,	35561420	35561492	35561470	35561470	Frame_Shift_Del	A	-	p.I49fs
LIHC	TCGA-DD-A1EG-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836080	35836080	Frame_Shift_Del	A	-	p.K346fs
LIHC	TCGA-DD-A1EG-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35870973:35871069:35873608:35873760:35879572:35879684,	35873609	35873760	35873649	35873649	Frame_Shift_Del	T	-	p.T1279fs
LIHC	TCGA-DD-A1EG-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2	chr1	35908506:35908629:35909761:35909904:35913773:35913800,	35909762	35909904	35909806	35909806	Frame_Shift_Del	T	-	p.K871fs
LIHC	TCGA-DD-A1EG-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2	chr1	35908506:35908629:35909761:35909904:35913773:35913800,	35909762	35909904	35909886	35909886	Frame_Shift_Del	A	-	p.F844fs
LIHC	TCGA-DD-A1EG-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2,ENST00000492544.1	chr1	35915965:35916110:35917228:35917377:35919157:35919290,	35917229	35917377	35917320	35917320	Frame_Shift_Del	C	-	p.G657fs
LIHC	TCGA-DD-A1EG-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000426982.2,ENST00000440579.1	chr1	35919962:35920086:35921613:35921842:35925905:35926038,	35921614	35921842	35921762	35921762	Frame_Shift_Del	G	-	p.P503fs
LIHC	TCGA-DD-A1EG-01	KIAA0319L	ENST00000325722.3,ENST00000482929.2,ENST00000426982.2,ENST00000478463.2,ENST00000440579.1,ENST00000469892.1	chr1	35944660:35944813:35972212:35972736:36019950:36020120,	35972213	35972736	35972696	35972696	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-DD-A1EG-01	CLSPN	ENST00000520551.1,ENST00000373220.3,ENST00000318121.3,ENST00000251195.5	chr1	36211051:36211163:36212366:36212593:36213507:36213662,	36212367	36212593	36212446	36212446	Frame_Shift_Del	T	-	p.K925fs
LIHC	TCGA-DD-A1EG-01	AGO3	ENST00000373191.4,ENST00000246314.6	chr1	36479515:36479649:36492714:36492899:36499774:36499934,	36492715	36492899	36492799	36492799	Frame_Shift_Del	G	-	p.Q497fs
LIHC	TCGA-DD-A1EG-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752146	36752146	Frame_Shift_Del	A	-	p.G105fs
LIHC	TCGA-DD-A1EG-01	SH3D21	ENST00000312808.4,ENST00000373139.2,ENST00000505871.1,ENST00000453908.2,ENST00000426732.2	chr1	36784878:36784913:36785042:36785137:36785275:36785398,	36785043	36785137	36785066	36785066	Frame_Shift_Del	G	-	p.G315fs
LIHC	TCGA-DD-A1EG-01	GNL2	ENST00000479255.1,ENST00000373062.3,ENST00000462812.1	chr1	38032421:38032608:38033273:38033365:38033875:38033958,	38033274	38033365	38033353	38033353	Frame_Shift_Del	T	-	p.K655fs
LIHC	TCGA-DD-A1EG-01	RSPO1	ENST00000373059.1,ENST00000401068.1,ENST00000401069.1,ENST00000356545.2	chr1	38077483:38078593:38079375:38079564:38079855:38080005,	38079376	38079564	38079445	38079445	Frame_Shift_Del	C	-	p.D186fs
LIHC	TCGA-DD-A1EG-01	RSPO1	ENST00000401070.1,ENST00000401069.1,ENST00000401071.2	chr1	38082155:38082347:38095239:38095621:38097958:38098025,	38095240	38095621	38095252	38095252	Frame_Shift_Del	T	-	p.R28fs
LIHC	TCGA-DD-A1EG-01	INPP5B	ENST00000373026.1,ENST00000373023.2,ENST00000373027.1,ENST00000373024.3	chr1	38348478:38348590:38351309:38351497:38352559:38352676,	38351310	38351497	38351356	38351356	Frame_Shift_Del	A	-	p.C505fs
LIHC	TCGA-DD-A1EG-01	RRAGC	ENST00000373001.3	chr1	39305020:39305376:39311610:39311759:39317286:39317429,	39311611	39311759	39311655	39311655	Frame_Shift_Del	A	-	p.L335fs
LIHC	TCGA-DD-A1EG-01	RHBDL2	ENST00000540558.1	chr1	39381233:39381382:39384638:39385009:39407353:39407456,	39384639	39385009	39384834	39384834	Frame_Shift_Del	C	-	p.G17fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000372915.3,ENST00000530262.1,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000524432.1,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39765985:39766034:39768595:39768750:39775241:39775368,	39768596	39768750	39768712	39768712	Frame_Shift_Del	C	-	p.I917fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39797071	39797071	Frame_Shift_Del	T	-	p.I1604fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798643	39798643	Frame_Shift_Del	G	-	p.R2128fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800357	39800357	Frame_Shift_Del	A	-	p.G2699fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800739	39800739	Frame_Shift_Del	A	-	p.K2827fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39801651	39801651	Frame_Shift_Del	A	-	p.K3131fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000539005.1,ENST00000372925.2	chr1	39835701:39835858:39838150:39838268:39844132:39844195,39835701:39835858:39838150:39838268:39844874:39845116,	39838151	39838268	39838221	39838221	Frame_Shift_Del	A	-	p.E4389fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39903448:39903680:39904945:39905172:39906674:39906797,	39904946	39905172	39905120	39905120	Frame_Shift_Del	A	-	p.E6132fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000446276.1,ENST00000497964.1,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39924794:39924921:39926303:39926466:39927554:39927709,	39926304	39926466	39926370	39926370	Frame_Shift_Del	A	-	p.K7144fs
LIHC	TCGA-DD-A1EG-01	MACF1	ENST00000442046.1,ENST00000446276.1,ENST00000567887.1,ENST00000564288.1	chr1	39945469:39945681:39950272:39950402:39951209:39952652,39946591:39946702:39950272:39950402:39951209:39952652,	39950273	39950402	39950317	39950317	Frame_Shift_Del	T	-	p.T7442fs
LIHC	TCGA-DD-A1EG-01	PPIE	ENST00000497370.1,ENST00000475350.1,ENST00000372835.5,ENST00000482751.1,ENST00000356511.2,ENST00000324379.5,ENST00000372830.1	chr1	40211085:40211170:40214574:40214760:40218581:40218724,	40214575	40214760	40214736	40214736	Frame_Shift_Del	T	-	p.F224fs
LIHC	TCGA-DD-A1EG-01	TRIT1	ENST00000495175.2,ENST00000441669.2,ENST00000316891.5,ENST00000492612.2,ENST00000545233.1	chr1	40310202:40310312:40312891:40312969:40348989:40349152,40310202:40310312:40312891:40312969:40313219:40313328,	40312892	40312969	40312897	40312897	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-DD-A1EG-01	TRIT1	ENST00000462797.1,ENST00000372818.1,ENST00000316891.5,ENST00000469476.2	chr1	40315794:40315933:40318402:40318548:40319641:40319740,	40318403	40318548	40318510	40318510	Frame_Shift_Del	T	-	p.K151fs
LIHC	TCGA-DD-A1EG-01	MFSD2A	ENST00000480630.1	chr1	40431528:40431686:40432272:40432363:40432482:40432604,40431528:40431686:40432272:40432363:40433299:40433383,	40432273	40432363	40432296	40432296	Frame_Shift_Del	G	-	p.A259fs
LIHC	TCGA-DD-A1EG-01	MFSD2A	ENST00000483824.1,ENST00000420632.2,ENST00000372811.5,ENST00000469745.1,ENST00000491515.1,ENST00000372809.5	chr1	40432333:40432363:40432482:40432604:40432757:40432841,	40432483	40432604	40432525	40432525	Frame_Shift_Del	G	-	p.R296fs
LIHC	TCGA-DD-A1EG-01	MFSD2A	ENST00000491515.1	chr1	40432757:40432841:40433299:40433588:40434005:40434149,	40433300	40433588	40433343	40433343	Frame_Shift_Del	C	-	p.T365fs
LIHC	TCGA-DD-A1EG-01	MFSD2A	ENST00000480630.1	chr1	40432757:40432841:40433299:40433383:40433475:40433588,40432333:40432363:40433299:40433383:40433475:40433588,	40433300	40433383	40433343	40433343	Frame_Shift_Del	C	-	p.T365fs
LIHC	TCGA-DD-A1EG-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535528	40535528	Frame_Shift_Del	G	-	p.E325fs
LIHC	TCGA-DD-A1EG-01	ZMPSTE24	ENST00000372759.3	chr1	40734090:40734207:40735646:40735799:40737565:40737707,	40735647	40735799	40735746	40735746	Frame_Shift_Del	G	-	p.G193fs
LIHC	TCGA-DD-A1EG-01	ZMPSTE24	ENST00000372759.3	chr1	40734090:40734207:40735646:40735799:40737565:40737707,	40735647	40735799	40735757	40735757	Frame_Shift_Del	T	-	p.Y195fs
LIHC	TCGA-DD-A1EG-01	ZMPSTE24	ENST00000372759.3	chr1	40737565:40737707:40747014:40747199:40751596:40751701,	40747015	40747199	40747046	40747046	Frame_Shift_Del	T	-	p.Y267fs
LIHC	TCGA-DD-A1EG-01	CTPS1	ENST00000498694.1,ENST00000541520.1,ENST00000463423.1,ENST00000372621.4,ENST00000372616.1	chr1	41474465:41474562:41475116:41475261:41475832:41475926,	41475117	41475261	41475214	41475214	Frame_Shift_Del	G	-	p.V548fs
LIHC	TCGA-DD-A1EG-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42046378	42046378	Frame_Shift_Del	T	-	p.K1364fs
LIHC	TCGA-DD-A1EG-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42049453	42049453	Frame_Shift_Del	G	-	p.P340fs
LIHC	TCGA-DD-A1EG-01	CCDC30	ENST00000342022.4,ENST00000390640.4,ENST00000507855.1,ENST00000340612.4,ENST00000477155.1,ENST00000428554.2,ENST00000471390.1	chr1	43076648:43076761:43102907:43103049:43108143:43108280,	43102908	43103049	43102921	43102921	Frame_Shift_Del	A	-	p.K504fs
LIHC	TCGA-DD-A1EG-01	TIE1	ENST00000372476.3	chr1	43773102:43773243:43773466:43773595:43774656:43774716,	43773467	43773595	43773473	43773473	Frame_Shift_Del	C	-	p.A307fs
LIHC	TCGA-DD-A1EG-01	TIE1	ENST00000372476.3	chr1	43773102:43773243:43773466:43773595:43774656:43774716,	43773467	43773595	43773483	43773483	Frame_Shift_Del	T	-	p.H310fs
LIHC	TCGA-DD-A1EG-01	TIE1	ENST00000473014.1	chr1	43779448:43779639:43782869:43783743:43784905:43785019,	43782870	43783743	43783326	43783326	Frame_Shift_Del	G	-	p.L904fs
LIHC	TCGA-DD-A1EG-01	TIE1	ENST00000473014.1	chr1	43779448:43779639:43782869:43783743:43784905:43785019,	43782870	43783743	43783641	43783641	Frame_Shift_Del	T	-	p.A940fs
LIHC	TCGA-DD-A1EG-01	TIE1	ENST00000433781.2,ENST00000372476.3	chr1	43787066:43787163:43787286:43787386:43788321:43788496,	43787287	43787386	43787339	43787339	Frame_Shift_Del	T	-	p.F1100fs
LIHC	TCGA-DD-A1EG-01	HYI	ENST00000372426.1,ENST00000372432.1,ENST00000583037.1,ENST00000372425.4,ENST00000470662.1,ENST00000372433.1,ENST00000372434.1,ENST00000372430.3,ENST00000487366.1,ENST00000486909.1,ENST00000372427.1	chr1	43917498:43917518:43917605:43917684:43917875:43917990,	43917606	43917684	43917612	43917612	Frame_Shift_Del	G	-	p.Q95fs
LIHC	TCGA-DD-A1EG-01	HYI	ENST00000372426.1,ENST00000372432.1,ENST00000583037.1,ENST00000372425.4,ENST00000470662.1,ENST00000372433.1,ENST00000372434.1,ENST00000372430.3,ENST00000487366.1,ENST00000486909.1,ENST00000372427.1	chr1	43917498:43917518:43917605:43917684:43917875:43917990,	43917606	43917684	43917671	43917671	Frame_Shift_Del	C	-	p.G74fs
LIHC	TCGA-DD-A1EG-01	KDM4A	ENST00000372396.3	chr1	44134770:44134970:44137175:44137546:44149354:44149475,	44137176	44137546	44137460	44137460	Frame_Shift_Del	G	-	p.G550fs
LIHC	TCGA-DD-A1EG-01	KDM4A	ENST00000372396.3	chr1	44134770:44134970:44137175:44137546:44149354:44149475,	44137176	44137546	44137522	44137522	Frame_Shift_Del	T	-	p.S570fs
LIHC	TCGA-DD-A1EG-01	KIF2C	ENST00000372222.3,ENST00000372224.4,ENST00000372217.1,ENST00000455186.1	chr1	45216113:45216236:45218803:45218926:45219404:45219505,	45218804	45218926	45218807	45218807	Frame_Shift_Del	C	-	p.A94fs
LIHC	TCGA-DD-A1EG-01	RPS8	ENST00000372209.3,ENST00000485390.1,ENST00000396651.3,ENST00000464658.1	chr1	45243285:45243461:45243671:45243801:45244247:45244411,	45243672	45243801	45243699	45243699	Frame_Shift_Del	A	-	p.K140fs
LIHC	TCGA-DD-A1EG-01	PTCH2	ENST00000372192.3,ENST00000447098.2	chr1	45295580:45295702:45296519:45296715:45297377:45297469,	45296520	45296715	45296635	45296635	Frame_Shift_Del	C	-	p.G233fs
LIHC	TCGA-DD-A1EG-01	EIF2B3	ENST00000372183.3,ENST00000360403.2,ENST00000439363.1	chr1	45345489:45345680:45347283:45347411:45363026:45363116,	45347284	45347411	45347301	45347301	Frame_Shift_Del	T	-	p.K256fs
LIHC	TCGA-DD-A1EG-01	EIF2B3	ENST00000487532.1,ENST00000480675.1,ENST00000372182.4,ENST00000372183.3,ENST00000497010.1,ENST00000360403.2,ENST00000477953.1	chr1	45443986:45444132:45446692:45446849:45452164:45452258,	45446693	45446849	45446717	45446717	Frame_Shift_Del	G	-	p.L43fs
LIHC	TCGA-DD-A1EG-01	ZSWIM5	ENST00000359600.5	chr1	45508890:45509067:45516745:45516925:45524280:45524431,	45516746	45516925	45516821	45516821	Frame_Shift_Del	G	-	p.L453fs
LIHC	TCGA-DD-A1EG-01	MUTYH	ENST00000482094.1,ENST00000456914.2,ENST00000372100.5,ENST00000372115.3,ENST00000529892.1,ENST00000528332.2,ENST00000372110.3,ENST00000481571.1,ENST00000450313.1,ENST00000533178.1,ENST00000354383.6,ENST00000475516.1,ENST00000467459.1,ENST00000529984.1,ENST00000448481.1,ENST00000372098.3,ENST00000528013.2,ENST00000488731.2,ENST00000372104.1,ENST00000355498.2	chr1	45796187:45796229:45796853:45797006:45797091:45797228,	45796854	45797006	45796936	45796936	Frame_Shift_Del	G	-	p.P465fs
LIHC	TCGA-DD-A1EG-01	TOE1	ENST00000495703.1	chr1	45805846:45805976:45806744:45806887:45806974:45807015,45805892:45806214:45806744:45806887:45806974:45807015,	45806745	45806887	45806771	45806771	Frame_Shift_Del	G	-	p.G27fs
LIHC	TCGA-DD-A1EG-01	TESK2	ENST00000538496.1,ENST00000486676.1,ENST00000372084.1,ENST00000372086.3,ENST00000341771.6	chr1	45813280:45813365:45813589:45813672:45820974:45821121,	45813590	45813672	45813598	45813598	Frame_Shift_Del	G	-	p.P205fs
LIHC	TCGA-DD-A1EG-01	TESK2	ENST00000451835.2,ENST00000486676.1,ENST00000372086.3,ENST00000341771.6	chr1	45887396:45887518:45923235:45923543:45956523:45956815,	45923236	45923543	45923307	45923307	Frame_Shift_Del	A	-	p.S51fs
LIHC	TCGA-DD-A1EG-01	AKR1A1	ENST00000351829.4,ENST00000372070.3,ENST00000487654.1	chr1	46033838:46033849:46034156:46034356:46034598:46034671,	46034157	46034356	46034320	46034320	Frame_Shift_Del	A	-	p.E239fs
LIHC	TCGA-DD-A1EG-01	IPP	ENST00000396478.3	chr1	46206572:46207004:46211791:46212133:46216268:46216321,	46211792	46212133	46211898	46211898	Frame_Shift_Del	A	-	p.F62fs
LIHC	TCGA-DD-A1EG-01	IPP	ENST00000396478.3	chr1	46206572:46207004:46211791:46212133:46216268:46216321,	46211792	46212133	46212005	46212005	Frame_Shift_Del	T	-	p.I27fs
LIHC	TCGA-DD-A1EG-01	MAST2	ENST00000372009.2,ENST00000372008.2,ENST00000361297.2,ENST00000482881.1	chr1	46425057:46425149:46463395:46463471:46468476:46468555,	46463396	46463471	46463454	46463454	Frame_Shift_Del	T	-	p.S217fs
LIHC	TCGA-DD-A1EG-01	MAST2	ENST00000372008.2,ENST00000361297.2	chr1	46476401:46476611:46485267:46485369:46487621:46487754,	46485268	46485369	46485341	46485341	Frame_Shift_Del	C	-	p.A421fs
LIHC	TCGA-DD-A1EG-01	PIK3R3	ENST00000262741.5,ENST00000354242.4,ENST00000488808.1,ENST00000540385.1,ENST00000372006.1,ENST00000340332.6,ENST00000420542.1,ENST00000423209.1	chr1	46509333:46509543:46511589:46511760:46512222:46512297,	46511590	46511760	46511613	46511613	Frame_Shift_Del	T	-	p.K388fs
LIHC	TCGA-DD-A1EG-01	PIK3R3	ENST00000262741.5,ENST00000354242.4,ENST00000488808.1,ENST00000540385.1,ENST00000372006.1,ENST00000340332.6,ENST00000420542.1,ENST00000423209.1	chr1	46509333:46509543:46511589:46511760:46512222:46512297,	46511590	46511760	46511703	46511703	Frame_Shift_Del	C	-	p.W358fs
LIHC	TCGA-DD-A1EG-01	LRRC41	ENST00000472710.1,ENST00000496156.1,ENST00000343304.6	chr1	46745163:46745286:46745863:46745962:46746067:46746232,	46745864	46745962	46745887	46745887	Frame_Shift_Del	A	-	p.L667fs
LIHC	TCGA-DD-A1EG-01	UQCRH	ENST00000311672.5	chr1	46774772:46774815:46775826:46775988:46782223:46782448,46774772:46774799:46775826:46775988:46782223:46782305,	46775827	46775988	46775830	46775830	Frame_Shift_Del	C	-	p.P29fs
LIHC	TCGA-DD-A1EG-01	CYP4A11	ENST00000468629.1	chr1	47400124:47400231:47400671:47400730:47401194:47401319,	47400672	47400730	47400684	47400684	Frame_Shift_Del	G	-	p.H260fs
LIHC	TCGA-DD-A1EG-01	CYP4A11	ENST00000371905.1,ENST00000310638.4	chr1	47400124:47400231:47400671:47400826:47401194:47401319,	47400672	47400826	47400684	47400684	Frame_Shift_Del	G	-	p.H260fs
LIHC	TCGA-DD-A1EG-01	CYP4A11	ENST00000371905.1,ENST00000310638.4	chr1	47400124:47400231:47400671:47400826:47401194:47401319,	47400672	47400826	47400774	47400774	Frame_Shift_Del	A	-	p.S230fs
LIHC	TCGA-DD-A1EG-01	CYP4A22	ENST00000371890.3,ENST00000485117.1,ENST00000294337.3,ENST00000490948.1,ENST00000371891.3	chr1	47606451:47606593:47607242:47607287:47607779:47607907,	47607243	47607287	47607282	47607282	Frame_Shift_Del	G	-	p.R126fs
LIHC	TCGA-DD-A1EG-01	CYP4A22	ENST00000371890.3,ENST00000485117.1,ENST00000294337.3,ENST00000490948.1,ENST00000371891.3	chr1	47610508:47610642:47611537:47611602:47611748:47611825,	47611538	47611602	47611559	47611559	Frame_Shift_Del	T	-	p.I415fs
LIHC	TCGA-DD-A1EG-01	SPATA6	ENST00000371843.3	chr1	48764319:48764565:48771458:48771550:48821341:48821441,48764319:48764565:48771458:48771550:48821389:48821441,	48771459	48771550	48771505	48771505	Frame_Shift_Del	T	-	p.S414fs
LIHC	TCGA-DD-A1EG-01	SPATA6	ENST00000490850.1,ENST00000396199.3,ENST00000603831.1,ENST00000371847.3	chr1	48771476:48771550:48821341:48821441:48825257:48825394,	48821342	48821441	48821382	48821382	Frame_Shift_Del	T	-	p.N385fs
LIHC	TCGA-DD-A1EG-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000486505.1,ENST00000371730.2	chr1	51864703:51864837:51866589:51866625:51868106:51868197,	51866590	51866625	51866593	51866593	Frame_Shift_Del	T	-	p.I639fs
LIHC	TCGA-DD-A1EG-01	EPS15	ENST00000371733.3,ENST00000371730.2	chr1	51912631:51912777:51913717:51913807:51926762:51926822,	51913718	51913807	51913734	51913734	Frame_Shift_Del	G	-	p.P212fs
LIHC	TCGA-DD-A1EG-01	EPS15	ENST00000371733.3,ENST00000371730.2,ENST00000471391.1,ENST00000371727.1	chr1	51930938:51930998:51934144:51934240:51937361:51937409,	51934145	51934240	51934200	51934200	Frame_Shift_Del	T	-	p.N85fs
LIHC	TCGA-DD-A1EG-01	EPS15	ENST00000371733.3,ENST00000371730.2,ENST00000471391.1,ENST00000371727.1	chr1	51930938:51930998:51934144:51934240:51937361:51937409,	51934145	51934240	51934232	51934232	Frame_Shift_Del	A	-	p.F74fs
LIHC	TCGA-DD-A1EG-01	CC2D1B	ENST00000438831.1,ENST00000491136.2,ENST00000371586.2,ENST00000450942.2,ENST00000284376.3,ENST00000485966.1,ENST00000460261.1,ENST00000438021.1	chr1	52820558:52820611:52821069:52821121:52821279:52821338,	52821070	52821121	52821106	52821106	Frame_Shift_Del	T	-	p.S741fs
LIHC	TCGA-DD-A1EG-01	ORC1	ENST00000371568.3,ENST00000371566.1	chr1	52849091:52849241:52849501:52849609:52850221:52850393,	52849502	52849609	52849592	52849592	Frame_Shift_Del	T	-	p.K591fs
LIHC	TCGA-DD-A1EG-01	ZYG11A	ENST00000371528.1	chr1	53308407:53308645:53320136:53320302:53322669:53323421,	53320137	53320302	53320264	53320264	Frame_Shift_Del	A	-	p.E73fs
LIHC	TCGA-DD-A1EG-01	ZYG11A	ENST00000371528.1,ENST00000371532.1	chr1	53343596:53343641:53347142:53347337:53351504:53351566,	53347143	53347337	53347291	53347291	Frame_Shift_Del	T	-	p.L633fs
LIHC	TCGA-DD-A1EG-01	ECHDC2	ENST00000460612.1	chr1	53370460:53370505:53370705:53372283:53373539:53373626,	53370706	53372283	53372235	53372235	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A1EG-01	ECHDC2	ENST00000487866.1,ENST00000536120.1,ENST00000479593.1,ENST00000476477.2,ENST00000371522.4	chr1	53370705:53370762:53372190:53372283:53373539:53373626,	53372191	53372283	53372235	53372235	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A1EG-01	SCP2	ENST00000371509.4,ENST00000371513.5	chr1	53416426:53416558:53420411:53420476:53427174:53427301,53413680:53413752:53420411:53420476:53427174:53427301,	53420412	53420476	53420458	53420458	Frame_Shift_Del	G	-	p.K126fs
LIHC	TCGA-DD-A1EG-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676661	53676661	Frame_Shift_Del	A	-	p.K439fs
LIHC	TCGA-DD-A1EG-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676732	53676732	Frame_Shift_Del	C	-	p.S462fs
LIHC	TCGA-DD-A1EG-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676855	53676855	Frame_Shift_Del	C	-	p.R503fs
LIHC	TCGA-DD-A1EG-01	NDC1	ENST00000371429.3,ENST00000540001.1	chr1	54293671:54293846:54298162:54298264:54301172:54301293,	54298163	54298264	54298258	54298258	Frame_Shift_Del	A	-	p.F62fs
LIHC	TCGA-DD-A1EG-01	LDLRAD1	ENST00000371360.1	chr1	54477815:54477953:54479908:54480037:54483048:54483100,	54479909	54480037	54480002	54480002	Frame_Shift_Del	C	-	p.A37fs
LIHC	TCGA-DD-A1EG-01	TMEM59	ENST00000371348.1,ENST00000371344.1,ENST00000371341.1,ENST00000234831.5,ENST00000452421.1,ENST00000440019.1,ENST00000420738.1	chr1	54502282:54502391:54506428:54506510:54507396:54507478,	54506429	54506510	54506473	54506473	Frame_Shift_Del	A	-	p.F90fs
LIHC	TCGA-DD-A1EG-01	TMEM59	ENST00000371348.1,ENST00000371344.1,ENST00000371341.1,ENST00000234831.5,ENST00000452421.1,ENST00000440019.1,ENST00000420738.1	chr1	54502282:54502391:54506428:54506510:54507396:54507478,	54506429	54506510	54506502	54506502	Frame_Shift_Del	T	-	p.M81fs
LIHC	TCGA-DD-A1EG-01	SSBP3	ENST00000525990.1	chr1	54870248:54870310:54870530:54870603:54879028:54879139,	54870531	54870603	54870577	54870577	Frame_Shift_Del	A	-	p.L29fs
LIHC	TCGA-DD-A1EG-01	C8A	ENST00000361249.3	chr1	57372339:57372465:57373628:57373786:57378075:57378298,	57373629	57373786	57373743	57373743	Frame_Shift_Del	G	-	p.W446fs
LIHC	TCGA-DD-A1EG-01	NFIA	ENST00000371189.4	chr1	61547533:61547719:61548432:61548490:61553820:61554352,	61548433	61548490	61548446	61548446	Frame_Shift_Del	C	-	p.P40fs
LIHC	TCGA-DD-A1EG-01	NFIA	ENST00000407417.3,ENST00000485903.2,ENST00000371185.2,ENST00000371184.2,ENST00000371189.4,ENST00000357977.5,ENST00000371191.1,ENST00000403491.3	chr1	61872343:61872399:61892136:61892228:61920974:61921159,	61892137	61892228	61892213	61892213	Frame_Shift_Del	C	-	p.I499fs
LIHC	TCGA-DD-A1EG-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62739130	62739130	Frame_Shift_Del	C	-	p.G549fs
LIHC	TCGA-DD-A1EG-01	USP1	ENST00000339950.4	chr1	62902325:62903071:62905469:62905708:62907158:62907251,	62905470	62905708	62905592	62905592	Frame_Shift_Del	A	-	p.S18fs
LIHC	TCGA-DD-A1EG-01	USP1	ENST00000339950.4	chr1	62902325:62903071:62905469:62905708:62907158:62907251,	62905470	62905708	62905678	62905678	Frame_Shift_Del	A	-	p.E47fs
LIHC	TCGA-DD-A1EG-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910797	62910797	Frame_Shift_Del	A	-	p.K316fs
LIHC	TCGA-DD-A1EG-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910822	62910822	Frame_Shift_Del	A	-	p.E324fs
LIHC	TCGA-DD-A1EG-01	ANGPTL3	ENST00000371129.3	chr1	63067990:63068051:63069639:63069906:63070303:63071830,	63069640	63069906	63069772	63069772	Frame_Shift_Del	A	-	p.E355fs
LIHC	TCGA-DD-A1EG-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284808	63284808	Frame_Shift_Del	T	-	p.I176fs
LIHC	TCGA-DD-A1EG-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284913	63284913	Frame_Shift_Del	T	-	p.L211fs
LIHC	TCGA-DD-A1EG-01	ITGB3BP	ENST00000371092.3,ENST00000271002.10	chr1	63906470:63906774:63912476:63912527:63919588:63919645,	63912477	63912527	63912485	63912485	Frame_Shift_Del	A	-	p.L215fs
LIHC	TCGA-DD-A1EG-01	ITGB3BP	ENST00000460394.1,ENST00000476508.1,ENST00000371092.3,ENST00000462285.1,ENST00000463803.1,ENST00000271002.10,ENST00000461681.1,ENST00000489863.1,ENST00000283568.8,ENST00000489099.1	chr1	63919588:63919645:63920050:63920144:63920560:63920620,	63920051	63920144	63920058	63920058	Frame_Shift_Del	T	-	p.K179fs
LIHC	TCGA-DD-A1EG-01	CACHD1	ENST00000495994.1,ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65130180:65130362:65131739:65131850:65137246:65137369,	65131740	65131850	65131772	65131772	Frame_Shift_Del	T	-	p.I770fs
LIHC	TCGA-DD-A1EG-01	LEPR	ENST00000344610.8,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66075629:66075789:66075896:66075979:66081690:66081907,	66075897	66075979	66075917	66075917	Frame_Shift_Del	T	-	p.F645fs
LIHC	TCGA-DD-A1EG-01	LEPR	ENST00000344610.8,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66075629:66075789:66075896:66075979:66081690:66081907,	66075897	66075979	66075956	66075956	Frame_Shift_Del	A	-	p.K658fs
LIHC	TCGA-DD-A1EG-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147585	67147585	Frame_Shift_Del	A	-	p.E283fs
LIHC	TCGA-DD-A1EG-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67306151:67306354:67313166:67313361:67327829:67327985,	67313167	67313361	67313328	67313328	Frame_Shift_Del	T	-	p.N377fs
LIHC	TCGA-DD-A1EG-01	SLC35D1	ENST00000235345.5,ENST00000506472.2	chr1	67487217:67487285:67507918:67508011:67512947:67513050,	67507919	67508011	67508000	67508000	Frame_Shift_Del	T	-	p.K216fs
LIHC	TCGA-DD-A1EG-01	WLS	ENST00000370976.3,ENST00000262348.4	chr1	68564155:68564436:68603462:68603616:68610251:68610335,68591656:68592018:68603462:68603616:68610251:68610335,	68603463	68603616	68603558	68603558	Frame_Shift_Del	A	-	p.F474fs
LIHC	TCGA-DD-A1EG-01	DEPDC1	ENST00000456315.2	chr1	68947122:68947295:68947728:68948580:68949632:68949773,	68947729	68948580	68948427	68948427	Frame_Shift_Del	T	-	p.N355fs
LIHC	TCGA-DD-A1EG-01	ANKRD13C	ENST00000370944.4,ENST00000262346.6,ENST00000490846.1	chr1	70758070:70758232:70761812:70761944:70766446:70766591,	70761813	70761944	70761907	70761907	Frame_Shift_Del	A	-	p.L320fs
LIHC	TCGA-DD-A1EG-01	CTH	ENST00000346806.2,ENST00000370938.3	chr1	70881638:70881720:70883619:70883715:70887248:70887358,	70883620	70883715	70883672	70883672	Frame_Shift_Del	A	-	p.L101fs
LIHC	TCGA-DD-A1EG-01	CTH	ENST00000346806.2,ENST00000370938.3	chr1	70881638:70881720:70883619:70883715:70887248:70887358,	70883620	70883715	70883706	70883706	Frame_Shift_Del	G	-	p.V113fs
LIHC	TCGA-DD-A1EG-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507427	74507427	Frame_Shift_Del	T	-	p.K396fs
LIHC	TCGA-DD-A1EG-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507427	74507427	Frame_Shift_Del	T	-	p.K396fs
LIHC	TCGA-DD-A1EG-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507493	74507493	Frame_Shift_Del	T	-	p.K374fs
LIHC	TCGA-DD-A1EG-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507493	74507493	Frame_Shift_Del	T	-	p.K374fs
LIHC	TCGA-DD-A1EG-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74507374:74507617:74540344:74540474:74575077:74575237,	74540345	74540474	74540383	74540383	Frame_Shift_Del	C	-	p.G320fs
LIHC	TCGA-DD-A1EG-01	CRYZ	ENST00000370872.3,ENST00000417775.1,ENST00000340866.5,ENST00000370870.1	chr1	75172788:75172888:75175781:75175931:75180262:75180314,	75175782	75175931	75175882	75175882	Frame_Shift_Del	A	-	p.L177fs
LIHC	TCGA-DD-A1EG-01	CRYZ	ENST00000370871.3,ENST00000441120.1,ENST00000417775.1,ENST00000340866.5,ENST00000370870.1	chr1	75180262:75180314:75184892:75185056:75188801:75188942,	75184893	75185056	75184961	75184961	Frame_Shift_Del	T	-	p.K120fs
LIHC	TCGA-DD-A1EG-01	TYW3	ENST00000479111.1,ENST00000457880.2,ENST00000370867.3	chr1	75214434:75214506:75217975:75218109:75229577:75229673,	75217976	75218109	75218018	75218018	Frame_Shift_Del	A	-	p.K157fs
LIHC	TCGA-DD-A1EG-01	ACADM	ENST00000473018.2,ENST00000370834.5,ENST00000420607.2,ENST00000534146.1,ENST00000370841.4,ENST00000534334.1	chr1	76194085:76194173:76198328:76198426:76198537:76198607,	76198329	76198426	76198370	76198370	Frame_Shift_Del	A	-	p.K54fs
LIHC	TCGA-DD-A1EG-01	ACADM	ENST00000526129.1,ENST00000541113.1,ENST00000420607.2,ENST00000532509.1,ENST00000526196.1,ENST00000370841.4	chr1	76198537:76198607:76199212:76199313:76200475:76200556,	76199213	76199313	76199310	76199310	Frame_Shift_Del	G	-	p.L128fs
LIHC	TCGA-DD-A1EG-01	RABGGTB	ENST00000319942.3,ENST00000473406.1,ENST00000470201.1,ENST00000491266.1	chr1	76255636:76255742:76256969:76257022:76257145:76257203,	76256970	76257022	76256992	76256992	Frame_Shift_Del	T	-	p.S146fs
LIHC	TCGA-DD-A1EG-01	ST6GALNAC5	ENST00000477717.1	chr1	77461141:77461205:77509888:77510298:77515942:77516001,77334181:77334427:77509888:77510298:77515942:77516001,	77509889	77510298	77510139	77510139	Frame_Shift_Del	G	-	p.W171fs
LIHC	TCGA-DD-A1EG-01	AK5	ENST00000344720.5,ENST00000530826.1,ENST00000354567.2	chr1	77951992:77952037:77984248:77984412:77987511:77987628,	77984249	77984412	77984364	77984364	Frame_Shift_Del	A	-	p.R395fs
LIHC	TCGA-DD-A1EG-01	AK5	ENST00000344720.5,ENST00000354567.2	chr1	77987511:77987628:78001531:78001723:78024286:78024414,	78001532	78001723	78001705	78001705	Frame_Shift_Del	A	-	p.T508fs
LIHC	TCGA-DD-A1EG-01	NEXN	ENST00000401035.3,ENST00000330010.8	chr1	78381739:78381818:78383644:78383723:78383809:78383958,	78383645	78383723	78383697	78383697	Frame_Shift_Del	A	-	p.E27fs
LIHC	TCGA-DD-A1EG-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401567	78401567	Frame_Shift_Del	A	-	p.L373fs
LIHC	TCGA-DD-A1EG-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401614	78401614	Frame_Shift_Del	A	-	p.E389fs
LIHC	TCGA-DD-A1EG-01	GIPC2	ENST00000370759.3	chr1	78511585:78512018:78546358:78546544:78560635:78560816,	78546359	78546544	78546462	78546462	Frame_Shift_Del	A	-	p.E115fs
LIHC	TCGA-DD-A1EG-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331323	85331323	Frame_Shift_Del	C	-	p.A161fs
LIHC	TCGA-DD-A1EG-01	MCOLN2	ENST00000463065.1,ENST00000531325.1,ENST00000370608.3,ENST00000284027.5	chr1	85418128:85418213:85422113:85422267:85424211:85424385,	85422114	85422267	85422157	85422157	Frame_Shift_Del	A	-	p.F174fs
LIHC	TCGA-DD-A1EG-01	MCOLN3	ENST00000341115.4,ENST00000370589.2,ENST00000474447.1	chr1	85484590:85484940:85486752:85486959:85487752:85487875,	85486753	85486959	85486881	85486881	Frame_Shift_Del	T	-	p.M467fs
LIHC	TCGA-DD-A1EG-01	MCOLN3	ENST00000341115.4	chr1	85498554:85498639:85499780:85499934:85506692:85506860,85498554:85498639:85499780:85499934:85510815:85511045,	85499781	85499934	85499884	85499884	Frame_Shift_Del	T	-	p.K149fs
LIHC	TCGA-DD-A1EG-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648320	85648320	Frame_Shift_Del	A	-	p.S669fs
LIHC	TCGA-DD-A1EG-01	ODF2L	ENST00000370566.3,ENST00000370567.1,ENST00000488879.2,ENST00000486557.1,ENST00000524695.1,ENST00000460698.2,ENST00000394731.1,ENST00000496592.1,ENST00000294678.2,ENST00000479890.1	chr1	86826114:86826219:86836700:86836836:86838113:86838223,	86836701	86836836	86836758	86836758	Frame_Shift_Del	T	-	p.K333fs
LIHC	TCGA-DD-A1EG-01	SH3GLB1	ENST00000482504.1,ENST00000535010.1,ENST00000370558.4	chr1	87185189:87185318:87188222:87188356:87189995:87190088,	87188223	87188356	87188250	87188250	Frame_Shift_Del	C	-	p.T124fs
LIHC	TCGA-DD-A1EG-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206692	89206692	Frame_Shift_Del	T	-	p.F24fs
LIHC	TCGA-DD-A1EG-01	GBP3	ENST00000489444.2	chr1	89474629:89474823:89475074:89475177:89478867:89479110,	89475075	89475177	89475086	89475086	Frame_Shift_Del	T	-	p.K485fs
LIHC	TCGA-DD-A1EG-01	GBP3	ENST00000235878.5,ENST00000370482.2,ENST00000370481.4,ENST00000493594.2	chr1	89476586:89476799:89477429:89477710:89478867:89479110,	89477430	89477710	89477655	89477655	Frame_Shift_Del	G	-	p.P308fs
LIHC	TCGA-DD-A1EG-01	GBP4	ENST00000355754.6	chr1	89655720:89656001:89656943:89657189:89658586:89658783,	89656944	89657189	89657075	89657075	Frame_Shift_Del	T	-	p.N262fs
LIHC	TCGA-DD-A1EG-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90050274	90050274	Frame_Shift_Del	A	-	p.N689fs
LIHC	TCGA-DD-A1EG-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90484243:90484343:90486350:90486481:90487808:90487904,	90486351	90486481	90486424	90486424	Frame_Shift_Del	T	-	p.A416fs
LIHC	TCGA-DD-A1EG-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90486350:90486481:90487808:90487904:90492912:90493375,	90487809	90487904	90487862	90487862	Frame_Shift_Del	A	-	p.L453fs
LIHC	TCGA-DD-A1EG-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404622	91404622	Frame_Shift_Del	T	-	p.K763fs
LIHC	TCGA-DD-A1EG-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406273	91406273	Frame_Shift_Del	T	-	p.K213fs
LIHC	TCGA-DD-A1EG-01	HFM1	ENST00000430465.1	chr1	91781947:91782033:91784849:91784947:91788506:91788554,	91784850	91784947	91784876	91784876	Frame_Shift_Del	A	-	p.F885fs
LIHC	TCGA-DD-A1EG-01	HFM1	ENST00000430465.1	chr1	91781947:91782033:91784849:91784947:91788506:91788554,	91784850	91784947	91784900	91784900	Frame_Shift_Del	A	-	p.L877fs
LIHC	TCGA-DD-A1EG-01	TGFBR3	ENST00000525962.1,ENST00000532540.1,ENST00000465892.2,ENST00000370399.2,ENST00000212355.4	chr1	92177799:92178099:92181792:92181951:92182124:92182265,	92181793	92181951	92181848	92181848	Frame_Shift_Del	A	-	p.L604fs
LIHC	TCGA-DD-A1EG-01	BRDT	ENST00000402388.1,ENST00000426141.1,ENST00000423434.1,ENST00000399546.2,ENST00000552654.1,ENST00000427104.1,ENST00000448194.1,ENST00000440509.1,ENST00000362005.3	chr1	92415861:92416031:92430183:92430321:92433702:92433781,92428363:92428503:92430183:92430321:92433702:92433781,	92430184	92430321	92430201	92430201	Frame_Shift_Del	A	-	p.I70fs
LIHC	TCGA-DD-A1EG-01	EVI5	ENST00000492513.1,ENST00000468580.1,ENST00000543509.1,ENST00000491940.1,ENST00000370331.1,ENST00000540033.1	chr1	93073172:93073284:93089732:93089891:93091350:93091491,	93089733	93089891	93089738	93089738	Frame_Shift_Del	T	-	p.T592fs
LIHC	TCGA-DD-A1EG-01	MTF2	ENST00000471953.1,ENST00000370303.4,ENST00000370298.4	chr1	93544867:93545088:93575786:93575985:93576101:93576183,	93575787	93575985	93575980	93575980	Frame_Shift_Del	A	-	p.K68fs
LIHC	TCGA-DD-A1EG-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93672667:93672955:93676358:93676483:93677657:93677818,	93676359	93676483	93676457	93676457	Frame_Shift_Del	A	-	p.A436fs
LIHC	TCGA-DD-A1EG-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000421014.2,ENST00000557479.1	chr1	93687415:93687493:93691889:93692006:93697982:93698150,	93691890	93692006	93691978	93691978	Frame_Shift_Del	A	-	p.E754fs
LIHC	TCGA-DD-A1EG-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93711661:93711761:93712394:93712511:93720027:93720171,	93712395	93712511	93712464	93712464	Frame_Shift_Del	G	-	p.G1050fs
LIHC	TCGA-DD-A1EG-01	FNBP1L	ENST00000260506.8,ENST00000370256.4,ENST00000370253.2,ENST00000604705.1,ENST00000271234.7	chr1	93987638:93987692:93988900:93989048:93989817:93989880,	93988901	93989048	93989031	93989031	Frame_Shift_Del	A	-	p.K109fs
LIHC	TCGA-DD-A1EG-01	ABCD3	ENST00000370214.4,ENST00000315713.5	chr1	94884034:94884144:94924162:94924199:94930330:94930429,	94924163	94924199	94924175	94924175	Frame_Shift_Del	A	-	p.G41fs
LIHC	TCGA-DD-A1EG-01	F3	ENST00000334047.7	chr1	94994865:94996152:94997876:94998036:94998645:94998824,	94997877	94998036	94998005	94998005	Frame_Shift_Del	A	-	p.L208fs
LIHC	TCGA-DD-A1EG-01	SNX7	ENST00000306121.3,ENST00000528824.1,ENST00000370189.5	chr1	99156630:99156741:99157090:99157255:99161073:99161272,	99157091	99157255	99157168	99157168	Frame_Shift_Del	T	-	p.A120fs
LIHC	TCGA-DD-A1EG-01	PALMD	ENST00000496843.1,ENST00000263174.4	chr1	100152631:100152745:100154330:100155428:100159574:100160097,	100154331	100155428	100155245	100155245	Frame_Shift_Del	A	-	p.K477fs
LIHC	TCGA-DD-A1EG-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100335955:100336137:100336313:100336425:100340242:100340366,	100336314	100336425	100336361	100336361	Frame_Shift_Del	C	-	p.L298fs
LIHC	TCGA-DD-A1EG-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100335955:100336137:100336313:100336425:100340242:100340366,	100336314	100336425	100336368	100336368	Frame_Shift_Del	T	-	p.F302fs
LIHC	TCGA-DD-A1EG-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100366191:100366417:100368238:100368350:100376267:100376403,	100368239	100368350	100368276	100368276	Frame_Shift_Del	A	-	p.Q1209fs
LIHC	TCGA-DD-A1EG-01	SLC35A3	ENST00000370153.1,ENST00000533028.1,ENST00000427993.2,ENST00000370156.3,ENST00000370155.3	chr1	100480857:100480976:100483237:100483371:100487941:100488512,	100483238	100483371	100483342	100483342	Frame_Shift_Del	T	-	p.Y286fs
LIHC	TCGA-DD-A1EG-01	SASS6	ENST00000462159.1,ENST00000287482.5	chr1	100587935:100588040:100588765:100588845:100591437:100591498,	100588766	100588845	100588802	100588802	Frame_Shift_Del	A	-	p.L57fs
LIHC	TCGA-DD-A1EG-01	TRMT13	ENST00000370141.2	chr1	100609624:100609699:100613449:100613882:100614180:100616053,	100613450	100613882	100613582	100613582	Frame_Shift_Del	A	-	p.E317fs
LIHC	TCGA-DD-A1EG-01	LRRC39	ENST00000342895.3,ENST00000370138.1,ENST00000370137.1	chr1	100621727:100621873:100623786:100623923:100624814:100624971,	100623787	100623923	100623865	100623865	Frame_Shift_Del	G	-	p.P145fs
LIHC	TCGA-DD-A1EG-01	DBT	ENST00000370131.3,ENST00000370132.4	chr1	100684181:100684303:100696288:100696470:100700991:100701067,	100696289	100696470	100696321	100696321	Frame_Shift_Del	G	-	p.P134fs
LIHC	TCGA-DD-A1EG-01	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964710	100964710	Frame_Shift_Del	C	-	p.S549fs
LIHC	TCGA-DD-A1EG-01	VCAM1	ENST00000370115.1,ENST00000347652.2,ENST00000294728.2	chr1	101185319:101185480:101186031:101186307:101188575:101188896,	101186032	101186307	101186281	101186281	Frame_Shift_Del	A	-	p.E105fs
LIHC	TCGA-DD-A1EG-01	VCAM1	ENST00000370119.4,ENST00000347652.2,ENST00000294728.2	chr1	101196753:101197074:101197973:101198240:101200057:101200324,	101197974	101198240	101198215	101198215	Frame_Shift_Del	A	-	p.R589fs
LIHC	TCGA-DD-A1EG-01	SLC30A7	ENST00000357650.4,ENST00000370112.4	chr1	101362125:101362227:101372407:101372521:101376618:101376706,	101372408	101372521	101372458	101372458	Frame_Shift_Del	T	-	p.I78fs
LIHC	TCGA-DD-A1EG-01	NTNG1	ENST00000370067.1,ENST00000370074.4,ENST00000370070.2,ENST00000370071.2,ENST00000370065.1,ENST00000370068.1,ENST00000294649.4,ENST00000542803.1,ENST00000370061.3,ENST00000370073.2,ENST00000370066.1,ENST00000370072.3	chr1	107691215:107691461:107866903:107867544:107937775:107937948,	107866904	107867544	107866981	107866981	Frame_Shift_Del	T	-	p.D108fs
LIHC	TCGA-DD-A1EG-01	FAM102B	ENST00000370035.3,ENST00000405454.1	chr1	109148844:109148874:109154799:109154916:109159003:109159050,	109154800	109154916	109154884	109154884	Frame_Shift_Del	A	-	p.K125fs
LIHC	TCGA-DD-A1EG-01	HENMT1	ENST00000402983.1,ENST00000370032.5,ENST00000370031.1,ENST00000420055.1	chr1	109197337:109197472:109198207:109198320:109200072:109200196,	109198208	109198320	109198307	109198307	Frame_Shift_Del	C	-	p.G55fs
LIHC	TCGA-DD-A1EG-01	STXBP3	ENST00000370008.3	chr1	109342841:109342927:109350022:109350171:109351404:109352148,	109350023	109350171	109350062	109350062	Frame_Shift_Del	A	-	p.R525fs
LIHC	TCGA-DD-A1EG-01	GPSM2	ENST00000264126.3,ENST00000441735.1,ENST00000406462.2	chr1	109456998:109457030:109461234:109461411:109465038:109465198,	109461235	109461411	109461328	109461328	Frame_Shift_Del	A	-	p.K454fs
LIHC	TCGA-DD-A1EG-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466643	109466643	Frame_Shift_Del	C	-	p.S541fs
LIHC	TCGA-DD-A1EG-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466709	109466709	Frame_Shift_Del	G	-	p.R563fs
LIHC	TCGA-DD-A1EG-01	C1orf194	ENST00000369949.4,ENST00000369942.2	chr1	109649628:109649744:109650542:109650659:109656254:109656457,	109650543	109650659	109650588	109650588	Frame_Shift_Del	G	-	p.P39fs
LIHC	TCGA-DD-A1EG-01	KIAA1324	ENST00000527996.1,ENST00000490758.2	chr1	109656794:109656958:109707120:109707313:109714487:109714635,	109707121	109707313	109707149	109707149	Frame_Shift_Del	G	-	p.L101fs
LIHC	TCGA-DD-A1EG-01	PSMA5	ENST00000484563.1	chr1	109957858:109957985:109964481:109964548:109968923:109968973,	109964482	109964548	109964505	109964505	Frame_Shift_Del	C	-	p.E25fs
LIHC	TCGA-DD-A1EG-01	GSTM4	ENST00000326729.5,ENST00000369836.4	chr1	110199342:110199409:110199836:110199901:110200211:110200293,	110199837	110199901	110199870	110199870	Frame_Shift_Del	A	-	p.E49fs
LIHC	TCGA-DD-A1EG-01	EPS8L3	ENST00000361965.4,ENST00000369805.3	chr1	110294380:110294404:110294616:110294815:110295307:110295342,	110294617	110294815	110294657	110294657	Frame_Shift_Del	T	-	p.N466fs
LIHC	TCGA-DD-A1EG-01	EPS8L3	ENST00000361852.4	chr1	110294380:110294404:110294616:110294725:110295307:110295342,	110294617	110294725	110294657	110294657	Frame_Shift_Del	T	-	p.N466fs
LIHC	TCGA-DD-A1EG-01	EPS8L3	ENST00000361965.4,ENST00000369805.3	chr1	110294380:110294404:110294616:110294815:110295307:110295342,	110294617	110294815	110294710	110294710	Frame_Shift_Del	T	-	p.K448fs
LIHC	TCGA-DD-A1EG-01	EPS8L3	ENST00000361852.4	chr1	110294380:110294404:110294616:110294725:110295307:110295342,	110294617	110294725	110294710	110294710	Frame_Shift_Del	T	-	p.K448fs
LIHC	TCGA-DD-A1EG-01	AHCYL1	ENST00000369799.5,ENST00000359172.3,ENST00000393614.4	chr1	110557384:110557479:110558046:110558153:110558965:110559082,	110558047	110558153	110558059	110558059	Frame_Shift_Del	G	-	p.G231fs
LIHC	TCGA-DD-A1EG-01	KCNC4	ENST00000438661.2,ENST00000413138.3,ENST00000469655.1,ENST00000369787.3	chr1	110754769:110754799:110765585:110766522:110768596:110768800,	110765586	110766522	110766123	110766123	Frame_Shift_Del	G	-	p.G406fs
LIHC	TCGA-DD-A1EG-01	KCNC4	ENST00000438661.2,ENST00000413138.3,ENST00000469655.1,ENST00000369787.3	chr1	110754769:110754799:110765585:110766522:110768596:110768800,	110765586	110766522	110766448	110766448	Frame_Shift_Del	C	-	p.S514fs
LIHC	TCGA-DD-A1EG-01	DRAM2	ENST00000480600.2	chr1	111667363:111667503:111668848:111668916:111674045:111674190,111663291:111663315:111668848:111668916:111674045:111674190,	111668849	111668916	111668889	111668889	Frame_Shift_Del	T	-	p.K53fs
LIHC	TCGA-DD-A1EG-01	CEPT1	ENST00000357172.4,ENST00000460443.1,ENST00000498239.1,ENST00000478042.1,ENST00000545121.1	chr1	111702001:111702149:111703776:111703918:111717500:111717585,	111703777	111703918	111703836	111703836	Frame_Shift_Del	T	-	p.F184fs
LIHC	TCGA-DD-A1EG-01	CHIA	ENST00000343320.6,ENST00000369740.1	chr1	111854310:111854340:111854811:111855013:111857161:111857218,	111854812	111855013	111854870	111854870	Frame_Shift_Del	G	-	p.L38fs
LIHC	TCGA-DD-A1EG-01	PIFO	ENST00000484512.1	chr1	111889241:111889293:111889531:111889671:111891137:111891268,111889241:111889293:111889531:111889671:111890295:111890394,	111889532	111889671	111889577	111889577	Frame_Shift_Del	T	-	p.L22fs
LIHC	TCGA-DD-A1EG-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959047	111959047	Frame_Shift_Del	C	-	p.A352fs
LIHC	TCGA-DD-A1EG-01	DDX20	ENST00000533164.1,ENST00000369702.4,ENST00000536167.1	chr1	112303847:112303906:112304876:112304959:112305298:112305404,	112304877	112304959	112304946	112304946	Frame_Shift_Del	T	-	p.I364fs
LIHC	TCGA-DD-A1EG-01	KCND3	ENST00000315987.2	chr1	112318430:112318900:112319647:112319895:112321057:112321114,	112319648	112319895	112319662	112319662	Frame_Shift_Del	G	-	p.P565fs
LIHC	TCGA-DD-A1EG-01	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000480988.1,ENST00000470519.1,ENST00000459630.1,ENST00000369666.1,ENST00000497457.1,ENST00000369664.1,ENST00000543570.1,ENST00000369668.2,ENST00000343210.7,ENST00000479436.1,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000360743.4,ENST00000361846.3,ENST00000418497.1	chr1	113140643:113140708:113143415:113143470:113153462:113153528,	113143416	113143470	113143437	113143437	Frame_Shift_Del	A	-	p.F162fs
LIHC	TCGA-DD-A1EG-01	MOV10	ENST00000468624.1,ENST00000496577.1,ENST00000369645.1,ENST00000413052.2,ENST00000369644.1,ENST00000357443.2	chr1	113232615:113232720:113234286:113234421:113235382:113235551,	113234287	113234421	113234342	113234342	Frame_Shift_Del	C	-	p.P242fs
LIHC	TCGA-DD-A1EG-01	PHTF1	ENST00000369598.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000447664.2	chr1	114269039:114269196:114280731:114280890:114281351:114281408,	114280732	114280890	114280811	114280811	Frame_Shift_Del	A	-	p.F84fs
LIHC	TCGA-DD-A1EG-01	AP4B1	ENST00000369569.1,ENST00000489499.1,ENST00000369571.2,ENST00000256658.4	chr1	114442952:114443022:114445259:114445484:114447226:114447415,114444380:114444507:114445259:114445484:114447226:114447415,	114445260	114445484	114445366	114445366	Frame_Shift_Del	G	-	p.L78fs
LIHC	TCGA-DD-A1EG-01	BCAS2	ENST00000369541.3	chr1	115113320:115113371:115118210:115118372:115123919:115124012,115113320:115113371:115118210:115118372:115119308:115119379,	115118211	115118372	115118337	115118337	Frame_Shift_Del	T	-	p.N98fs
LIHC	TCGA-DD-A1EG-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115222309:115222329:115222879:115223099:115226819:115226985,	115222880	115223099	115222907	115222907	Frame_Shift_Del	A	-	p.L277fs
LIHC	TCGA-DD-A1EG-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115222309:115222329:115222879:115223099:115226819:115226985,	115222880	115223099	115223015	115223015	Frame_Shift_Del	T	-	p.K240fs
LIHC	TCGA-DD-A1EG-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115261233:115261366:115262199:115262363:115263159:115263338,	115262200	115262363	115262317	115262317	Frame_Shift_Del	A	-	p.F746fs
LIHC	TCGA-DD-A1EG-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000483030.1,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115266503:115266623:115267841:115267954:115268831:115268969,	115267842	115267954	115267861	115267861	Frame_Shift_Del	T	-	p.K624fs
LIHC	TCGA-DD-A1EG-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115273149:115273269:115275224:115275437:115276352:115276478,	115275225	115275437	115275252	115275252	Frame_Shift_Del	A	-	p.F387fs
LIHC	TCGA-DD-A1EG-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430252	115430252	Frame_Shift_Del	A	-	p.E399fs
LIHC	TCGA-DD-A1EG-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527421	115527421	Frame_Shift_Del	A	-	p.K881fs
LIHC	TCGA-DD-A1EG-01	TSPAN2	ENST00000369515.2,ENST00000491992.1,ENST00000369516.2	chr1	115593110:115593176:115595999:115596083:115600157:115600223,	115596000	115596083	115596022	115596022	Frame_Shift_Del	C	-	p.G193fs
LIHC	TCGA-DD-A1EG-01	TSPAN2	ENST00000369516.2,ENST00000433172.1,ENST00000369514.2	chr1	115601503:115601602:115603084:115603159:115604755:115604853,	115603085	115603159	115603154	115603154	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A1EG-01	ATP1A1	ENST00000488733.1,ENST00000295598.5	chr1	116915890:116916145:116926635:116926746:116927404:116927464,	116926636	116926746	116926693	116926693	Frame_Shift_Del	A	-	p.K25fs
LIHC	TCGA-DD-A1EG-01	VTCN1	ENST00000369458.3,ENST00000539893.1,ENST00000359008.4	chr1	117695830:117695991:117699195:117699543:117712728:117712784,	117699196	117699543	117699403	117699403	Frame_Shift_Del	C	-	p.V80fs
LIHC	TCGA-DD-A1EG-01	VTCN1	ENST00000463461.1	chr1	117695830:117695991:117699195:117699633:117712728:117712784,	117699196	117699633	117699403	117699403	Frame_Shift_Del	C	-	p.V80fs
LIHC	TCGA-DD-A1EG-01	WDR3	ENST00000349139.5,ENST00000369441.3	chr1	118481102:118481181:118482099:118482195:118483449:118483563,	118482100	118482195	118482145	118482145	Frame_Shift_Del	G	-	p.G209fs
LIHC	TCGA-DD-A1EG-01	SPAG17	ENST00000336338.5,ENST00000437255.1	chr1	118534037:118534151:118535088:118535271:118537028:118537153,	118535089	118535271	118535209	118535209	Frame_Shift_Del	T	-	p.K1747fs
LIHC	TCGA-DD-A1EG-01	TBX15	ENST00000207157.3,ENST00000369429.3	chr1	119466058:119466226:119467268:119467440:119469132:119469234,	119467269	119467440	119467314	119467314	Frame_Shift_Del	A	-	p.F216fs
LIHC	TCGA-DD-A1EG-01	ITGA10	ENST00000538811.1	chr1	145525015:145525117:145527612:145527724:145530266:145530358,	145527613	145527724	145527708	145527708	Frame_Shift_Del	G	-	p.G52fs
LIHC	TCGA-DD-A1EG-01	ITGA10	ENST00000538811.1,ENST00000369304.3,ENST00000539363.1	chr1	145539364:145539445:145539682:145539796:145541440:145541536,	145539683	145539796	145539785	145539785	Frame_Shift_Del	T	-	p.F1074fs
LIHC	TCGA-DD-A1EG-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561841	145561841	Frame_Shift_Del	G	-	p.R510fs
LIHC	TCGA-DD-A1EG-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562117	145562117	Frame_Shift_Del	A	-	p.E602fs
LIHC	TCGA-DD-A1EG-01	PIAS3	ENST00000393046.2,ENST00000369298.1,ENST00000369299.3,ENST00000498436.1,ENST00000393045.2	chr1	145578949:145579000:145579241:145579332:145580187:145580322,	145579242	145579332	145579285	145579285	Frame_Shift_Del	C	-	p.P209fs
LIHC	TCGA-DD-A1EG-01	PIAS3	ENST00000393046.2,ENST00000369298.1,ENST00000369299.3,ENST00000498436.1,ENST00000393045.2	chr1	145578949:145579000:145579241:145579332:145580187:145580322,	145579242	145579332	145579323	145579323	Frame_Shift_Del	C	-	p.C220fs
LIHC	TCGA-DD-A1EG-01	CHD1L	ENST00000369258.4,ENST00000431239.1,ENST00000492728.1,ENST00000467213.1	chr1	146724277:146724390:146726524:146726631:146727467:146727582,	146726525	146726631	146726545	146726545	Frame_Shift_Del	T	-	p.Y87fs
LIHC	TCGA-DD-A1EG-01	CHD1L	ENST00000361293.5	chr1	146728184:146728216:146731490:146731572:146736080:146736243,146714395:146714480:146731490:146731572:146737590:146737746,	146731491	146731572	146731534	146731534	Frame_Shift_Del	A	-	p.K180fs
LIHC	TCGA-DD-A1EG-01	CHD1L	ENST00000361293.5,ENST00000369258.4,ENST00000369259.3,ENST00000431239.1,ENST00000467213.1	chr1	146757000:146757164:146757974:146758177:146759313:146759412,	146757975	146758177	146758130	146758130	Frame_Shift_Del	C	-	p.T725fs
LIHC	TCGA-DD-A1EG-01	GPR89B	ENST00000488165.1,ENST00000478307.1	chr1	147400548:147400691:147408740:147408800:147410827:147410848,	147408741	147408800	147408747	147408747	Frame_Shift_Del	T	-	p.F18fs
LIHC	TCGA-DD-A1EG-01	MTMR11	ENST00000482343.1,ENST00000482025.1,ENST00000492824.1,ENST00000361405.6,ENST00000406732.3,ENST00000439741.2	chr1	149907191:149907252:149907476:149907598:149908046:149908122,	149907477	149907598	149907574	149907574	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-DD-A1EG-01	VPS45	ENST00000535106.1,ENST00000369130.3,ENST00000369128.5,ENST00000419023.1,ENST00000477558.1	chr1	150049746:150049857:150053423:150053558:150053965:150054079,	150053424	150053558	150053482	150053482	Frame_Shift_Del	T	-	p.L249fs
LIHC	TCGA-DD-A1EG-01	ANP32E	ENST00000369119.3,ENST00000314136.8	chr1	150199085:150199127:150201404:150201570:150202905:150203028,	150201405	150201570	150201490	150201490	Frame_Shift_Del	A	-	p.F136fs
LIHC	TCGA-DD-A1EG-01	APH1A	ENST00000369109.3,ENST00000236017.5,ENST00000414276.2,ENST00000360244.4	chr1	150239044:150239056:150239474:150239602:150239755:150239803,	150239475	150239602	150239499	150239499	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-DD-A1EG-01	APH1A	ENST00000461320.1	chr1	150239044:150239056:150239474:150239654:150239755:150239803,	150239475	150239654	150239499	150239499	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-DD-A1EG-01	C1orf54	ENST00000369099.3,ENST00000369102.1,ENST00000369098.3	chr1	150245201:150245266:150246489:150246573:150248149:150248208,	150246490	150246573	150246562	150246562	Frame_Shift_Del	C	-	p.T40fs
LIHC	TCGA-DD-A1EG-01	PRPF3	ENST00000543398.1,ENST00000324862.6,ENST00000414970.2,ENST00000467329.1	chr1	150305449:150305670:150307405:150307712:150310635:150310802,	150307406	150307712	150307605	150307605	Frame_Shift_Del	T	-	p.F311fs
LIHC	TCGA-DD-A1EG-01	TARS2	ENST00000369064.3,ENST00000369051.3,ENST00000606933.1,ENST00000369054.2,ENST00000467982.2	chr1	150476810:150476911:150477107:150477209:150477381:150477454,	150477108	150477209	150477199	150477199	Frame_Shift_Del	G	-	p.G605fs
LIHC	TCGA-DD-A1EG-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5	chr1	150530420:150530625:150530948:150531125:150531437:150531641,	150530949	150531125	150531054	150531054	Frame_Shift_Del	C	-	p.P831fs
LIHC	TCGA-DD-A1EG-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000489159.1,ENST00000369039.5	chr1	150531762:150531942:150532236:150532381:150532535:150533143,	150532237	150532381	150532255	150532255	Frame_Shift_Del	G	-	p.G989fs
LIHC	TCGA-DD-A1EG-01	ENSA	ENST00000369014.5,ENST00000361532.5	chr1	150595206:150595335:150598117:150598284:150599942:150600068,	150598118	150598284	150598123	150598123	Frame_Shift_Del	A	-	p.L115fs
LIHC	TCGA-DD-A1EG-01	GOLPH3L	ENST00000427665.1	chr1	150634289:150634404:150636107:150636239:150667131:150667326,150634289:150634404:150636107:150636239:150666583:150666649,	150636108	150636239	150636142	150636142	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A1EG-01	HORMAD1	ENST00000442853.1,ENST00000322343.7,ENST00000368987.1,ENST00000361824.2,ENST00000368995.4,ENST00000368993.2	chr1	150679105:150679285:150680731:150680883:150681369:150681437,	150680732	150680883	150680744	150680744	Frame_Shift_Del	A	-	p.Y180fs
LIHC	TCGA-DD-A1EG-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000368962.2,ENST00000534805.1,ENST00000498193.1	chr1	150915038:150915164:150915327:150915529:150916395:150916469,	150915328	150915529	150915516	150915516	Frame_Shift_Del	A	-	p.K288fs
LIHC	TCGA-DD-A1EG-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150935062:150935195:150935449:150935615:150936005:150936217,	150935450	150935615	150935485	150935485	Frame_Shift_Del	G	-	p.E1109fs
LIHC	TCGA-DD-A1EG-01	GABPB2	ENST00000368918.3,ENST00000489549.1	chr1	151070327:151070478:151076037:151076151:151079512:151079653,	151076038	151076151	151076123	151076123	Frame_Shift_Del	C	-	p.V236fs
LIHC	TCGA-DD-A1EG-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288306	151288306	Frame_Shift_Del	C	-	p.A230fs
LIHC	TCGA-DD-A1EG-01	SELENBP1	ENST00000447402.3,ENST00000424475.1,ENST00000493560.1,ENST00000470345.1,ENST00000423070.1,ENST00000427977.2,ENST00000368868.5,ENST00000426705.2,ENST00000458566.1,ENST00000455397.1,ENST00000443708.1,ENST00000463664.1,ENST00000435071.1	chr1	151338147:151338160:151338243:151338322:151338750:151338929,	151338244	151338322	151338281	151338281	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A1EG-01	SELENBP1	ENST00000474352.1	chr1	151338147:151338160:151338243:151338929:151339197:151339380,	151338244	151338929	151338281	151338281	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A1EG-01	SELENBP1	ENST00000498494.1,ENST00000423070.1,ENST00000427977.2,ENST00000473693.1,ENST00000368868.5,ENST00000427867.2,ENST00000426705.2,ENST00000455397.1,ENST00000443708.1,ENST00000435071.1	chr1	151340674:151340795:151341917:151342030:151342188:151342245,151341543:151341665:151341917:151342030:151342188:151342245,	151341918	151342030	151341929	151341929	Frame_Shift_Del	G	-	p.Q97fs
LIHC	TCGA-DD-A1EG-01	SELENBP1	ENST00000470345.1,ENST00000474352.1	chr1	151340674:151340795:151341479:151342245:151345113:151345159,	151341480	151342245	151341929	151341929	Frame_Shift_Del	G	-	p.Q97fs
LIHC	TCGA-DD-A1EG-01	SELENBP1	ENST00000458566.1	chr1	151341543:151341665:151341917:151341982:151342188:151342245,	151341918	151341982	151341929	151341929	Frame_Shift_Del	G	-	p.Q97fs
LIHC	TCGA-DD-A1EG-01	SELENBP1	ENST00000492643.1,ENST00000493560.1,ENST00000463664.1	chr1	151340674:151340795:151341479:151342030:151342188:151342245,	151341480	151342030	151341929	151341929	Frame_Shift_Del	G	-	p.Q97fs
LIHC	TCGA-DD-A1EG-01	THEM5	ENST00000368817.5	chr1	151820657:151820768:151823528:151823667:151824733:151824876,	151823529	151823667	151823532	151823532	Frame_Shift_Del	G	-	p.P154fs
LIHC	TCGA-DD-A1EG-01	PGLYRP4	ENST00000359650.5	chr1	153315565:153315684:153317644:153317858:153318577:153318667,	153317645	153317858	153317811	153317811	Frame_Shift_Del	C	-	p.A59fs
LIHC	TCGA-DD-A1EG-01	PGLYRP4	ENST00000368739.3	chr1	153315565:153315684:153317644:153317846:153318577:153318667,	153317645	153317846	153317811	153317811	Frame_Shift_Del	C	-	p.A59fs
LIHC	TCGA-DD-A1EG-01	S100A2	ENST00000368707.4	chr1	153534052:153534067:153535890:153536012:153536209:153536329,	153535891	153536012	153535919	153535919	Frame_Shift_Del	T	-	p.S79fs
LIHC	TCGA-DD-A1EG-01	S100A2	ENST00000497140.1	chr1	153534052:153534067:153536209:153536329:153537981:153538018,	153536210	153536329	153536254	153536254	Frame_Shift_Del	C	-	p.E33fs
LIHC	TCGA-DD-A1EG-01	S100A2	ENST00000368709.1	chr1	153533824:153534067:153536209:153536363:153539177:153539231,	153536210	153536363	153536254	153536254	Frame_Shift_Del	C	-	p.E33fs
LIHC	TCGA-DD-A1EG-01	ILF2	ENST00000480213.1,ENST00000361891.4	chr1	153634540:153635032:153635180:153635271:153635494:153635609,	153635181	153635271	153635203	153635203	Frame_Shift_Del	A	-	p.L330fs
LIHC	TCGA-DD-A1EG-01	ILF2	ENST00000368684.4,ENST00000361891.4,ENST00000368681.1	chr1	153640030:153640133:153640475:153640553:153640928:153641033,	153640476	153640553	153640522	153640522	Frame_Shift_Del	T	-	p.N83fs
LIHC	TCGA-DD-A1EG-01	INTS3	ENST00000476843.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000480659.1,ENST00000512605.1,ENST00000481797.1	chr1	153727117:153727215:153730047:153730239:153732001:153732089,	153730048	153730239	153730064	153730064	Frame_Shift_Del	A	-	p.Q119fs
LIHC	TCGA-DD-A1EG-01	SLC27A3	ENST00000483574.2,ENST00000368661.3,ENST00000484014.1	chr1	153748442:153748640:153748993:153749203:153749537:153749696,	153748994	153749203	153749150	153749150	Frame_Shift_Del	C	-	p.S403fs
LIHC	TCGA-DD-A1EG-01	SLC27A3	ENST00000524676.1	chr1	153750987:153751029:153751233:153751361:153751589:153751687,	153751234	153751361	153751294	153751294	Frame_Shift_Del	G	-	p.G655fs
LIHC	TCGA-DD-A1EG-01	SLC27A3	ENST00000368661.3,ENST00000458027.1,ENST00000271857.2,ENST00000484014.1	chr1	153750987:153751029:153751162:153751361:153751589:153751687,	153751163	153751361	153751294	153751294	Frame_Shift_Del	G	-	p.G655fs
LIHC	TCGA-DD-A1EG-01	DENND4B	ENST00000492898.1	chr1	153903014:153903079:153903167:153903540:153904679:153904731,	153903168	153903540	153903218	153903218	Frame_Shift_Del	C	-	p.G1410fs
LIHC	TCGA-DD-A1EG-01	DENND4B	ENST00000361217.4	chr1	153903014:153903079:153903167:153903333:153903422:153903540,	153903168	153903333	153903218	153903218	Frame_Shift_Del	C	-	p.G1410fs
LIHC	TCGA-DD-A1EG-01	CRTC2	ENST00000487235.1,ENST00000368633.1,ENST00000476883.1,ENST00000461638.2	chr1	153925791:153925845:153926013:153926082:153926730:153926792,	153926014	153926082	153926037	153926037	Frame_Shift_Del	A	-	p.F160fs
LIHC	TCGA-DD-A1EG-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934772	153934772	Frame_Shift_Del	A	-	p.L81fs
LIHC	TCGA-DD-A1EG-01	TPM3	ENST00000368530.2,ENST00000271850.7	chr1	154145559:154145677:154148590:154148724:154155463:154155554,154145559:154145677:154148590:154148724:154163661:154163787,	154148591	154148724	154148611	154148611	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A1EG-01	TPM3	ENST00000312970.8	chr1	154145559:154145677:154148590:154148655:154155463:154155554,	154148591	154148655	154148611	154148611	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A1EG-01	C1orf43	ENST00000368518.1,ENST00000368519.1	chr1	154186932:154187050:154192311:154192413:154192817:154193009,	154192312	154192413	154192328	154192328	Frame_Shift_Del	C	-	p.G51fs
LIHC	TCGA-DD-A1EG-01	UBAP2L	ENST00000493867.1	chr1	154238976:154239044:154241235:154241430:154243356:154243485,154238976:154239044:154241235:154241430:154241837:154241888,	154241236	154241430	154241372	154241372	Frame_Shift_Del	C	-	p.T1037fs
LIHC	TCGA-DD-A1EG-01	UBAP2L	ENST00000428595.1	chr1	154238976:154239044:154241232:154241430:154243356:154243485,154238976:154239044:154241232:154241430:154242675:154243040,154238976:154239044:154241232:154241430:154241837:154241888,	154241233	154241430	154241372	154241372	Frame_Shift_Del	C	-	p.T1037fs
LIHC	TCGA-DD-A1EG-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
LIHC	TCGA-DD-A1EG-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
LIHC	TCGA-DD-A1EG-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
LIHC	TCGA-DD-A1EG-01	ATP8B2	ENST00000368489.3	chr1	154317446:154317630:154317797:154318021:154318275:154318359,	154317798	154318021	154317959	154317959	Frame_Shift_Del	A	-	p.K911fs
LIHC	TCGA-DD-A1EG-01	ATP8B2	ENST00000368489.3	chr1	154317797:154318021:154318275:154318359:154318706:154318952,	154318276	154318359	154318344	154318344	Frame_Shift_Del	G	-	p.M954fs
LIHC	TCGA-DD-A1EG-01	ADAR	ENST00000368471.3,ENST00000368474.4,ENST00000292205.5,ENST00000529168.1	chr1	154560600:154560734:154561026:154561149:154561844:154561938,	154561027	154561149	154561115	154561115	Frame_Shift_Del	G	-	p.Q933fs
LIHC	TCGA-DD-A1EG-01	FLAD1	ENST00000368432.1,ENST00000315144.10	chr1	154955906:154956109:154956317:154956542:154960580:154960909,154955813:154955873:154956317:154956542:154959941:154960076,154955842:154955873:154956317:154956542:154960580:154960643,	154956318	154956542	154956356	154956356	Frame_Shift_Del	C	-	p.G62fs
LIHC	TCGA-DD-A1EG-01	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3	chr1	154956317:154956542:154960580:154961325:154962035:154962183,	154960581	154961325	154961089	154961089	Frame_Shift_Del	C	-	p.A294fs
LIHC	TCGA-DD-A1EG-01	ADAM15	ENST00000271836.6,ENST00000368412.3,ENST00000526491.1,ENST00000447332.3,ENST00000355956.2,ENST00000461564.2,ENST00000531455.1,ENST00000534019.1,ENST00000527418.1,ENST00000487956.2,ENST00000356955.2,ENST00000360674.4,ENST00000359280.4,ENST00000529473.1,ENST00000472434.1,ENST00000449910.2	chr1	155028407:155028476:155028555:155028725:155028861:155028883,	155028556	155028725	155028591	155028591	Frame_Shift_Del	G	-	p.V260fs
LIHC	TCGA-DD-A1EG-01	ADAM15	ENST00000360674.4,ENST00000474709.1	chr1	155033238:155033308:155034720:155034845:155034935:155035066,155032741:155032819:155034720:155034845:155034935:155035145,	155034721	155034845	155034745	155034745	Frame_Shift_Del	C	-	p.P818fs
LIHC	TCGA-DD-A1EG-01	THBS3	ENST00000457183.2,ENST00000541576.1,ENST00000368378.3,ENST00000541990.1,ENST00000469769.1	chr1	155165635:155165690:155165777:155165917:155166831:155167000,	155165778	155165917	155165845	155165845	Frame_Shift_Del	C	-	p.G915fs
LIHC	TCGA-DD-A1EG-01	THBS3	ENST00000541990.1	chr1	155174850:155175107:155175983:155176197:155177588:155177688,	155175984	155176197	155176079	155176079	Frame_Shift_Del	G	-	p.P66fs
LIHC	TCGA-DD-A1EG-01	THBS3	ENST00000368378.3	chr1	155174850:155175107:155175990:155176197:155177588:155177688,	155175991	155176197	155176079	155176079	Frame_Shift_Del	G	-	p.P66fs
LIHC	TCGA-DD-A1EG-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155264272:155264543:155264906:155265093:155265227:155265359,	155264907	155265093	155264957	155264957	Frame_Shift_Del	C	-	p.G184fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155327106:155327201:155327375:155327540:155330091:155330200,	155327376	155327540	155327427	155327427	Frame_Shift_Del	T	-	p.K2308fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155340294:155340441:155340567:155340774:155348071:155348180,	155340568	155340774	155340649	155340649	Frame_Shift_Del	C	-	p.G2158fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155365249:155365344:155385534:155385714:155408117:155408859,	155385535	155385714	155385598	155385598	Frame_Shift_Del	G	-	p.P1982fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408481	155408481	Frame_Shift_Del	T	-	p.N1822fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449995	155449995	Frame_Shift_Del	T	-	p.K889fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450138	155450138	Frame_Shift_Del	C	-	p.G841fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450319	155450319	Frame_Shift_Del	T	-	p.K781fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451129	155451129	Frame_Shift_Del	T	-	p.K511fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451642	155451642	Frame_Shift_Del	T	-	p.K341fs
LIHC	TCGA-DD-A1EG-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491186	155491186	Frame_Shift_Del	T	-	p.N42fs
LIHC	TCGA-DD-A1EG-01	DAP3	ENST00000462002.1,ENST00000471523.1,ENST00000343043.3,ENST00000368336.5,ENST00000496863.1,ENST00000471214.1,ENST00000463575.1	chr1	155686796:155686919:155691307:155691409:155695172:155695281,	155691308	155691409	155691351	155691351	Frame_Shift_Del	C	-	p.S71fs
LIHC	TCGA-DD-A1EG-01	DAP3	ENST00000462002.1,ENST00000471523.1,ENST00000343043.3,ENST00000368336.5,ENST00000496863.1,ENST00000471214.1,ENST00000463575.1	chr1	155686796:155686919:155691307:155691409:155695172:155695281,	155691308	155691409	155691377	155691377	Frame_Shift_Del	C	-	p.P80fs
LIHC	TCGA-DD-A1EG-01	DAP3	ENST00000343043.3,ENST00000368336.5,ENST00000421487.2,ENST00000471642.2,ENST00000535183.1	chr1	155701146:155701206:155701734:155701824:155706736:155706854,	155701735	155701824	155701780	155701780	Frame_Shift_Del	T	-	p.F317fs
LIHC	TCGA-DD-A1EG-01	SSR2	ENST00000532074.1	chr1	155981600:155981678:155984751:155984864:155988060:155988159,	155984752	155984864	155984844	155984844	Frame_Shift_Del	G	-	p.H91fs
LIHC	TCGA-DD-A1EG-01	SSR2	ENST00000484320.2	chr1	155981600:155981678:155984751:155984860:155988060:155988159,155981619:155981678:155984751:155984860:155987922:155988159,	155984752	155984860	155984844	155984844	Frame_Shift_Del	G	-	p.H91fs
LIHC	TCGA-DD-A1EG-01	RAB25	ENST00000473336.1,ENST00000487325.1	chr1	156035701:156035897:156038060:156038254:156039461:156039542,156031173:156031234:156038060:156038254:156039461:156039542,	156038061	156038254	156038079	156038079	Frame_Shift_Del	G	-	p.V86fs
LIHC	TCGA-DD-A1EG-01	SEMA4A	ENST00000368285.3,ENST00000435124.1,ENST00000355014.2,ENST00000368286.2,ENST00000368282.1,ENST00000438830.1	chr1	156124340:156124508:156126204:156126365:156127860:156127923,	156126205	156126365	156126299	156126299	Frame_Shift_Del	G	-	p.V78fs
LIHC	TCGA-DD-A1EG-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156131136:156131309:156132734:156132885:156142616:156142797,	156132735	156132885	156132858	156132858	Frame_Shift_Del	C	-	p.G369fs
LIHC	TCGA-DD-A1EG-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156131136:156131309:156132734:156132885:156142616:156142797,	156132735	156132885	156132870	156132870	Frame_Shift_Del	C	-	p.N373fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255084	156255084	Frame_Shift_Del	C	-	p.P23fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255084	156255084	Frame_Shift_Del	C	-	p.P23fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255129	156255129	Frame_Shift_Del	G	-	p.G38fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255129	156255129	Frame_Shift_Del	G	-	p.G38fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255569	156255569	Frame_Shift_Del	T	-	p.C184fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255569	156255569	Frame_Shift_Del	T	-	p.C184fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255569	156255569	Frame_Shift_Del	T	-	p.C184fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255750	156255750	Frame_Shift_Del	T	-	p.F245fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255750	156255750	Frame_Shift_Del	T	-	p.F245fs
LIHC	TCGA-DD-A1EG-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255750	156255750	Frame_Shift_Del	T	-	p.F245fs
LIHC	TCGA-DD-A1EG-01	RHBG	ENST00000368246.2,ENST00000368247.1,ENST00000368249.1,ENST00000255013.3,ENST00000446171.1,ENST00000466013.1	chr1	156347153:156347278:156347780:156347931:156348042:156348190,	156347781	156347931	156347805	156347805	Frame_Shift_Del	G	-	p.A64fs
LIHC	TCGA-DD-A1EG-01	RHBG	ENST00000400992.2,ENST00000544720.1,ENST00000368245.3,ENST00000451864.2	chr1	156347153:156347278:156347780:156348190:156351137:156351304,	156347781	156348190	156347805	156347805	Frame_Shift_Del	G	-	p.A64fs
LIHC	TCGA-DD-A1EG-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351945	156351945	Frame_Shift_Del	G	-	p.L323fs
LIHC	TCGA-DD-A1EG-01	MEF2D	ENST00000360595.3,ENST00000368240.2,ENST00000348159.4	chr1	156449081:156449138:156449377:156449588:156452228:156452432,156449081:156449138:156449377:156449588:156450625:156450763,	156449378	156449588	156449441	156449441	Frame_Shift_Del	G	-	p.Q183fs
LIHC	TCGA-DD-A1EG-01	MEF2D	ENST00000464356.2,ENST00000340875.5	chr1	156449377:156449588:156450434:156450569:156452228:156452432,	156450435	156450569	156450512	156450512	Frame_Shift_Del	G	-	p.L106fs
LIHC	TCGA-DD-A1EG-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156524026:156524184:156526324:156526485:156530725:156530813,	156526325	156526485	156526399	156526399	Frame_Shift_Del	G	-	p.Q406fs
LIHC	TCGA-DD-A1EG-01	BCAN	ENST00000329117.5	chr1	156621247:156621481:156622039:156622684:156626073:156626181,	156622040	156622684	156622437	156622437	Frame_Shift_Del	G	-	p.V565fs
LIHC	TCGA-DD-A1EG-01	RRNAD1	ENST00000368216.4,ENST00000519086.1	chr1	156698800:156699007:156701782:156701907:156702072:156702265,	156701783	156701907	156701786	156701786	Frame_Shift_Del	T	-	p.F40fs
LIHC	TCGA-DD-A1EG-01	RRNAD1	ENST00000368216.4	chr1	156703168:156703312:156703800:156704285:156705516:156705592,	156703801	156704285	156703910	156703910	Frame_Shift_Del	G	-	p.R249fs
LIHC	TCGA-DD-A1EG-01	RRNAD1	ENST00000368216.4	chr1	156703168:156703312:156703800:156704285:156705516:156705592,	156703801	156704285	156704265	156704265	Frame_Shift_Del	C	-	p.V367fs
LIHC	TCGA-DD-A1EG-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708445	156708445	Frame_Shift_Del	G	-	p.H18fs
LIHC	TCGA-DD-A1EG-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708481	156708481	Frame_Shift_Del	G	-	p.L7fs
LIHC	TCGA-DD-A1EG-01	SH2D2A	ENST00000368198.3,ENST00000368199.3,ENST00000392306.2	chr1	156776966:156777137:156778994:156779282:156779452:156779599,	156778995	156779282	156779178	156779178	Frame_Shift_Del	G	-	p.P283fs
LIHC	TCGA-DD-A1EG-01	ARHGEF11	ENST00000368194.3	chr1	156939789:156939835:156941488:156941608:156946774:156946846,	156941489	156941608	156941579	156941579	Frame_Shift_Del	G	-	p.P204fs
LIHC	TCGA-DD-A1EG-01	ARHGEF11	ENST00000361409.2	chr1	156941488:156941608:156946774:156946846:156947995:156948174,156939789:156939835:156946774:156946846:156947995:156948174,	156946775	156946846	156946829	156946829	Frame_Shift_Del	T	-	p.K176fs
LIHC	TCGA-DD-A1EG-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A1EG-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A1EG-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A1EG-01	FCRL2	ENST00000368178.3,ENST00000361516.3	chr1	157718342:157718408:157718664:157718750:157719439:157719467,	157718665	157718750	157718700	157718700	Frame_Shift_Del	G	-	p.P453fs
LIHC	TCGA-DD-A1EG-01	CD1E	ENST00000444681.2	chr1	158324254:158324463:158325089:158325359:158325616:158325730,158323805:158323836:158325089:158325359:158325616:158325730,	158325090	158325359	158325225	158325225	Frame_Shift_Del	G	-	p.R65fs
LIHC	TCGA-DD-A1EG-01	IFI16	ENST00000430894.2,ENST00000359709.3	chr1	158985667:158985777:158988018:158988441:158990130:158990319,	158988019	158988441	158988142	158988142	Frame_Shift_Del	A	-	p.K226fs
LIHC	TCGA-DD-A1EG-01	IFI16	ENST00000430894.2,ENST00000368131.4,ENST00000359709.3,ENST00000295809.7,ENST00000493884.1	chr1	158990130:158990319:159002313:159002481:159015086:159015254,	159002314	159002481	159002320	159002320	Frame_Shift_Del	A	-	p.K391fs
LIHC	TCGA-DD-A1EG-01	IFI16	ENST00000430894.2,ENST00000368131.4,ENST00000359709.3,ENST00000295809.7,ENST00000493884.1	chr1	158990130:158990319:159002313:159002481:159015086:159015254,	159002314	159002481	159002389	159002389	Frame_Shift_Del	T	-	p.Y413fs
LIHC	TCGA-DD-A1EG-01	DUSP23	ENST00000368108.3	chr1	159750749:159750783:159750888:159751157:159751942:159752333,	159750889	159751157	159751150	159751150	Frame_Shift_Del	G	-	p.R87fs
LIHC	TCGA-DD-A1EG-01	FCRL6	ENST00000321935.6,ENST00000368106.3,ENST00000339348.5	chr1	159777967:159778234:159778750:159779035:159779191:159779212,	159778751	159779035	159778842	159778842	Frame_Shift_Del	C	-	p.H144fs
LIHC	TCGA-DD-A1EG-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898029	159898029	Frame_Shift_Del	G	-	p.P1050fs
LIHC	TCGA-DD-A1EG-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898714	159898714	Frame_Shift_Del	C	-	p.D822fs
LIHC	TCGA-DD-A1EG-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159906543:159906698:159907475:159907628:159912752:159912941,	159907476	159907628	159907586	159907586	Frame_Shift_Del	C	-	p.G97fs
LIHC	TCGA-DD-A1EG-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912846	159912846	Frame_Shift_Del	G	-	p.L52fs
LIHC	TCGA-DD-A1EG-01	SLAMF9	ENST00000368093.3	chr1	159921281:159921656:159922051:159922324:159923098:159923439,	159922052	159922324	159922196	159922196	Frame_Shift_Del	C	-	p.D174fs
LIHC	TCGA-DD-A1EG-01	IGSF8	ENST00000368086.1,ENST00000448417.1	chr1	160063549:160063961:160064658:160065036:160068198:160068307,	160064659	160065036	160064848	160064848	Frame_Shift_Del	G	-	p.Q85fs
LIHC	TCGA-DD-A1EG-01	ATP1A2	ENST00000392233.3,ENST00000447527.1,ENST00000361216.3,ENST00000472488.1	chr1	160100211:160100387:160104273:160104410:160104934:160105085,	160104274	160104410	160104330	160104330	Frame_Shift_Del	G	-	p.V628fs
LIHC	TCGA-DD-A1EG-01	CASQ1	ENST00000481081.1,ENST00000368078.3,ENST00000368079.3	chr1	160162591:160162676:160163536:160163637:160164801:160164913,	160163537	160163637	160163615	160163615	Frame_Shift_Del	C	-	p.T142fs
LIHC	TCGA-DD-A1EG-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160268634:160268781:160268891:160269054:160275222:160275361,	160268892	160269054	160268915	160268915	Frame_Shift_Del	G	-	p.L603fs
LIHC	TCGA-DD-A1EG-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160293220:160293320:160295332:160295442:160302237:160302347,	160295333	160295442	160295427	160295427	Frame_Shift_Del	T	-	p.N171fs
LIHC	TCGA-DD-A1EG-01	NCSTN	ENST00000368065.4,ENST00000435149.1,ENST00000368063.1,ENST00000535857.1,ENST00000392212.4,ENST00000294785.5,ENST00000459963.1	chr1	160323907:160324080:160325444:160325547:160325652:160325748,	160325445	160325547	160325498	160325498	Frame_Shift_Del	A	-	p.E449fs
LIHC	TCGA-DD-A1EG-01	VANGL2	ENST00000368061.2	chr1	160385437:160385698:160385851:160385972:160388791:160389399,	160385852	160385972	160385889	160385889	Frame_Shift_Del	G	-	p.G38fs
LIHC	TCGA-DD-A1EG-01	SLAMF7	ENST00000441662.2	chr1	160720111:160720213:160721134:160721238:160721975:160722036,160719827:160719883:160721134:160721238:160721975:160722036,160717983:160718304:160721134:160721238:160721975:160722036,	160721135	160721238	160721190	160721190	Frame_Shift_Del	C	-	p.C275fs
LIHC	TCGA-DD-A1EG-01	LY9	ENST00000368037.5,ENST00000368035.1,ENST00000368040.1,ENST00000263285.6	chr1	160784312:160784551:160786383:160786653:160788007:160788107,	160786384	160786653	160786398	160786398	Frame_Shift_Del	C	-	p.P363fs
LIHC	TCGA-DD-A1EG-01	USF1	ENST00000496363.1,ENST00000534633.1,ENST00000368020.1,ENST00000368021.3,ENST00000435396.1,ENST00000473969.2	chr1	161011179:161011201:161011440:161011636:161011905:161012007,	161011441	161011636	161011524	161011524	Frame_Shift_Del	C	-	p.G130fs
LIHC	TCGA-DD-A1EG-01	USF1	ENST00000435396.1,ENST00000473969.2	chr1	161011623:161011636:161011905:161012007:161012344:161012460,161011623:161011636:161011905:161012007:161012375:161012460,	161011906	161012007	161011975	161011975	Frame_Shift_Del	C	-	p.G69fs
LIHC	TCGA-DD-A1EG-01	ARHGAP30	ENST00000461003.1,ENST00000368015.1,ENST00000490279.1,ENST00000368016.3,ENST00000368013.3	chr1	161019384:161019479:161021103:161021505:161022075:161022153,	161021104	161021505	161021229	161021229	Frame_Shift_Del	G	-	p.P432fs
LIHC	TCGA-DD-A1EG-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134345	161134345	Frame_Shift_Del	A	-	p.K443fs
LIHC	TCGA-DD-A1EG-01	PPOX	ENST00000352210.5,ENST00000494216.1,ENST00000367999.4	chr1	161137884:161137917:161138221:161138366:161138782:161138973,	161138222	161138366	161138328	161138328	Frame_Shift_Del	C	-	p.T193fs
LIHC	TCGA-DD-A1EG-01	PPOX	ENST00000495483.1	chr1	161137160:161137276:161138202:161138366:161138782:161138973,	161138203	161138366	161138328	161138328	Frame_Shift_Del	C	-	p.T193fs
LIHC	TCGA-DD-A1EG-01	B4GALT3	ENST00000319769.5,ENST00000493164.1	chr1	161144841:161145018:161145597:161145864:161146223:161146298,	161145598	161145864	161145762	161145762	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-DD-A1EG-01	B4GALT3	ENST00000367998.1,ENST00000496313.1,ENST00000487004.1	chr1	161144841:161145018:161145597:161145885:161146223:161146298,	161145598	161145885	161145762	161145762	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-DD-A1EG-01	NDUFS2	ENST00000392179.4,ENST00000479948.1,ENST00000496553.1,ENST00000478866.1,ENST00000367993.3,ENST00000496133.1	chr1	161172165:161172270:161173226:161173333:161176196:161176383,	161173227	161173333	161173273	161173273	Frame_Shift_Del	G	-	p.G49fs
LIHC	TCGA-DD-A1EG-01	SDHC	ENST00000470743.3	chr1	161293403:161293460:161298185:161298287:161309351:161309378,161293405:161293460:161298185:161298287:161310383:161310418,161296440:161296558:161298185:161298287:161310383:161310418,	161298186	161298287	161298211	161298211	Frame_Shift_Del	A	-	p.K35fs
LIHC	TCGA-DD-A1EG-01	ATF6	ENST00000367942.3	chr1	161832990:161833102:161882085:161882170:161928235:161933860,	161882086	161882170	161882133	161882133	Frame_Shift_Del	A	-	p.P589fs
LIHC	TCGA-DD-A1EG-01	NOS1AP	ENST00000530878.1,ENST00000430120.3,ENST00000361897.5	chr1	162270437:162270496:162302806:162302915:162313624:162313766,	162302807	162302915	162302830	162302830	Frame_Shift_Del	C	-	p.S123fs
LIHC	TCGA-DD-A1EG-01	UAP1	ENST00000271469.3	chr1	162531511:162531567:162535801:162536138:162546566:162546771,	162535802	162536138	162535941	162535941	Frame_Shift_Del	C	-	p.A28fs
LIHC	TCGA-DD-A1EG-01	DDR2	ENST00000367921.3,ENST00000367922.3	chr1	162741813:162742037:162743258:162743386:162745441:162745633,	162743259	162743386	162743352	162743352	Frame_Shift_Del	A	-	p.K608fs
LIHC	TCGA-DD-A1EG-01	HSD17B7	ENST00000367913.1	chr1	162762448:162762652:162766374:162766467:162767617:162767939,	162766375	162766467	162766460	162766460	Frame_Shift_Del	T	-	p.F109fs
LIHC	TCGA-DD-A1EG-01	RGS4	ENST00000421743.2,ENST00000533019.1,ENST00000367906.3,ENST00000527809.1,ENST00000367909.6,ENST00000528938.1	chr1	163042594:163042656:163043245:163043412:163044110:163046381,	163043246	163043412	163043368	163043368	Frame_Shift_Del	A	-	p.K210fs
LIHC	TCGA-DD-A1EG-01	MGST3	ENST00000367885.1	chr1	165601299:165601379:165601467:165601511:165619077:165619201,165600494:165600530:165601467:165601511:165619077:165619201,	165601468	165601511	165601487	165601487	Frame_Shift_Del	G	-	p.R4fs
LIHC	TCGA-DD-A1EG-01	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000392129.6,ENST00000580248.1	chr1	165697322:165697358:165712403:165712548:165721338:165721406,	165712404	165712548	165712505	165712505	Frame_Shift_Del	A	-	p.S174fs
LIHC	TCGA-DD-A1EG-01	POGK	ENST00000367875.1,ENST00000449930.1,ENST00000367876.4	chr1	166810191:166810325:166815848:166815975:166816730:166816829,	166815849	166815975	166815904	166815904	Frame_Shift_Del	T	-	p.V63fs
LIHC	TCGA-DD-A1EG-01	POU2F1	ENST00000541643.3,ENST00000557874.1,ENST00000429375.2,ENST00000443275.1,ENST00000271411.4,ENST00000367865.1,ENST00000367866.2,ENST00000420254.3,ENST00000367862.5	chr1	167368422:167368602:167370687:167370793:167381195:167381541,	167370688	167370793	167370744	167370744	Frame_Shift_Del	C	-	p.S491fs
LIHC	TCGA-DD-A1EG-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654711	167654711	Frame_Shift_Del	C	-	p.F54fs
LIHC	TCGA-DD-A1EG-01	GPR161	ENST00000361697.2,ENST00000537209.1	chr1	168065745:168066470:168073714:168074132:168104143:168104274,	168073715	168074132	168073969	168073969	Frame_Shift_Del	A	-	p.F40fs
LIHC	TCGA-DD-A1EG-01	NME7	ENST00000524967.1,ENST00000485609.1,ENST00000528517.1,ENST00000367811.3,ENST00000480478.1,ENST00000525440.1,ENST00000472647.1,ENST00000483228.1	chr1	169267842:169268001:169272382:169272433:169279207:169279309,	169272383	169272433	169272386	169272386	Frame_Shift_Del	A	-	p.F146fs
LIHC	TCGA-DD-A1EG-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351320	169351320	Frame_Shift_Del	T	-	p.V273fs
LIHC	TCGA-DD-A1EG-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351458	169351458	Frame_Shift_Del	A	-	p.Q319fs
LIHC	TCGA-DD-A1EG-01	CCDC181	ENST00000367806.3	chr1	169364284:169364444:169366474:169366629:169388250:169388397,	169366475	169366629	169366600	169366600	Frame_Shift_Del	A	-	p.F414fs
LIHC	TCGA-DD-A1EG-01	CCDC181	ENST00000545005.1,ENST00000367805.3	chr1	169364284:169364444:169366474:169366626:169388250:169388397,	169366475	169366626	169366600	169366600	Frame_Shift_Del	A	-	p.F414fs
LIHC	TCGA-DD-A1EG-01	CCDC181	ENST00000545005.1,ENST00000491570.1,ENST00000367805.3,ENST00000367806.3	chr1	169388250:169388397:169390600:169391551:169394048:169394168,	169390601	169391551	169390862	169390862	Frame_Shift_Del	T	-	p.K269fs
LIHC	TCGA-DD-A1EG-01	CCDC181	ENST00000545005.1,ENST00000491570.1,ENST00000367805.3,ENST00000367806.3	chr1	169388250:169388397:169390600:169391551:169394048:169394168,	169390601	169391551	169391084	169391084	Frame_Shift_Del	A	-	p.F195fs
LIHC	TCGA-DD-A1EG-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169509882	169509882	Frame_Shift_Del	A	-	p.F1487fs
LIHC	TCGA-DD-A1EG-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169512307	169512307	Frame_Shift_Del	T	-	p.K679fs
LIHC	TCGA-DD-A1EG-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169541458:169541581:169551668:169551760:169555466:169555719,	169551669	169551760	169551736	169551736	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-DD-A1EG-01	SELL	ENST00000463108.1,ENST00000236147.4	chr1	169672457:169672581:169673708:169673894:169676482:169676590,	169673709	169673894	169673858	169673858	Frame_Shift_Del	C	-	p.G219fs
LIHC	TCGA-DD-A1EG-01	SELE	ENST00000333360.7	chr1	169696489:169696666:169696879:169697068:169697198:169697387,	169696880	169697068	169697038	169697038	Frame_Shift_Del	G	-	p.P437fs
LIHC	TCGA-DD-A1EG-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169812814:169812910:169816830:169816944:169818640:169818745,	169816831	169816944	169816922	169816922	Frame_Shift_Del	T	-	p.L679fs
LIHC	TCGA-DD-A1EG-01	SCYL3	ENST00000470238.1	chr1	169838068:169838180:169839395:169839498:169842836:169842893,169838068:169838269:169839395:169839498:169842836:169842893,	169839396	169839498	169839419	169839419	Frame_Shift_Del	A	-	p.L202fs
LIHC	TCGA-DD-A1EG-01	GORAB	ENST00000367762.1	chr1	170501291:170501425:170508350:170508708:170511631:170511733,	170508351	170508708	170508411	170508411	Frame_Shift_Del	A	-	p.E66fs
LIHC	TCGA-DD-A1EG-01	FMO3	ENST00000367755.4,ENST00000392085.2,ENST00000542847.1,ENST00000538429.1	chr1	171079938:171080138:171083146:171083502:171085347:171085420,	171083147	171083502	171083298	171083298	Frame_Shift_Del	T	-	p.F327fs
LIHC	TCGA-DD-A1EG-01	VAMP4	ENST00000474047.1,ENST00000236192.7,ENST00000482519.1	chr1	171688310:171688361:171697663:171697710:171707488:171707603,	171697664	171697710	171697666	171697666	Frame_Shift_Del	A	-	p.F37fs
LIHC	TCGA-DD-A1EG-01	SLC9C2	ENST00000536496.1,ENST00000367714.3	chr1	173552644:173552761:173556803:173556969:173567042:173567171,	173556804	173556969	173556852	173556852	Frame_Shift_Del	G	-	p.L159fs
LIHC	TCGA-DD-A1EG-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173795824:173795924:173797470:173797537:173799797:173799899,	173797471	173797537	173797505	173797505	Frame_Shift_Del	G	-	p.G88fs
LIHC	TCGA-DD-A1EG-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173799797:173799899:173800672:173800768:173802513:173802637,	173800673	173800768	173800706	173800706	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-DD-A1EG-01	DARS2	ENST00000361951.4,ENST00000239457.5,ENST00000471476.1	chr1	173810050:173810111:173814366:173814429:173819464:173819617,	173814367	173814429	173814420	173814420	Frame_Shift_Del	T	-	p.H394fs
LIHC	TCGA-DD-A1EG-01	DARS2	ENST00000361951.4	chr1	173822582:173822705:173822932:173823043:173825803:173825879,	173822933	173823043	173822962	173822962	Frame_Shift_Del	A	-	p.L531fs
LIHC	TCGA-DD-A1EG-01	RC3H1	ENST00000258349.4,ENST00000367696.2,ENST00000367694.2	chr1	173916506:173916720:173921123:173921276:173930214:173930382,	173921124	173921276	173921238	173921238	Frame_Shift_Del	T	-	p.K803fs
LIHC	TCGA-DD-A1EG-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525780	176525780	Frame_Shift_Del	C	-	p.P109fs
LIHC	TCGA-DD-A1EG-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525967	176525967	Frame_Shift_Del	C	-	p.A170fs
LIHC	TCGA-DD-A1EG-01	SEC16B	ENST00000327037.4,ENST00000528461.1,ENST00000308284.6	chr1	177906348:177906648:177908836:177908912:177909744:177909845,	177908837	177908912	177908857	177908857	Frame_Shift_Del	C	-	p.G728fs
LIHC	TCGA-DD-A1EG-01	RASAL2	ENST00000367649.3	chr1	178421571:178421787:178423581:178423783:178425855:178426034,	178423582	178423783	178423740	178423740	Frame_Shift_Del	T	-	p.V705fs
LIHC	TCGA-DD-A1EG-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178777179:178777263:178780449:178780539:178790746:178790839,	178780450	178780539	178780494	178780494	Frame_Shift_Del	A	-	p.L114fs
LIHC	TCGA-DD-A1EG-01	TOR3A	ENST00000367627.3,ENST00000352445.6,ENST00000483887.1	chr1	179052074:179052188:179054762:179055028:179057045:179057218,	179054763	179055028	179054835	179054835	Frame_Shift_Del	G	-	p.R149fs
LIHC	TCGA-DD-A1EG-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414117	179414117	Frame_Shift_Del	A	-	p.K527fs
LIHC	TCGA-DD-A1EG-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414231	179414231	Frame_Shift_Del	A	-	p.K564fs
LIHC	TCGA-DD-A1EG-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414242	179414242	Frame_Shift_Del	G	-	p.E567fs
LIHC	TCGA-DD-A1EG-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179609513:179609580:179620001:179620202:179621173:179621332,	179620002	179620202	179620102	179620102	Frame_Shift_Del	T	-	p.I634fs
LIHC	TCGA-DD-A1EG-01	CEP350	ENST00000367607.3	chr1	179956377:179956421:179961196:179961356:179965687:179966098,179959641:179959756:179961196:179961356:179965687:179966098,	179961197	179961356	179961221	179961221	Frame_Shift_Del	G	-	p.W87fs
LIHC	TCGA-DD-A1EG-01	QSOX1	ENST00000367600.5,ENST00000367602.3	chr1	180159588:180159715:180163347:180163527:180165396:180165734,	180163348	180163527	180163520	180163520	Frame_Shift_Del	C	-	p.R487fs
LIHC	TCGA-DD-A1EG-01	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180905149	180905149	Frame_Shift_Del	T	-	p.F702fs
LIHC	TCGA-DD-A1EG-01	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180905488	180905488	Frame_Shift_Del	A	-	p.K815fs
LIHC	TCGA-DD-A1EG-01	CACNA1E	ENST00000526775.1,ENST00000357570.5,ENST00000367573.2,ENST00000367567.4,ENST00000358338.5,ENST00000367570.1,ENST00000360108.3	chr1	181732541:181732667:181735681:181735747:181740428:181740520,	181735682	181735747	181735716	181735716	Frame_Shift_Del	T	-	p.L1598fs
LIHC	TCGA-DD-A1EG-01	RGS8	ENST00000258302.4	chr1	182635125:182635168:182636006:182636108:182640791:182640865,	182636007	182636108	182636024	182636024	Frame_Shift_Del	T	-	p.K37fs
LIHC	TCGA-DD-A1EG-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000474446.1	chr1	182847155:182847308:182848384:182848545:182849631:182849743,	182848385	182848545	182848432	182848432	Frame_Shift_Del	A	-	p.E800fs
LIHC	TCGA-DD-A1EG-01	LAMC1	ENST00000478064.1,ENST00000258341.4	chr1	183100433:183100513:183101534:183101672:183102540:183102673,	183101535	183101672	183101539	183101539	Frame_Shift_Del	A	-	p.K1191fs
LIHC	TCGA-DD-A1EG-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183184587:183184723:183187524:183187623:183189959:183190096,	183187525	183187623	183187611	183187611	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-DD-A1EG-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183205594:183205739:183206486:183206639:183207441:183207556,	183206487	183206639	183206512	183206512	Frame_Shift_Del	A	-	p.Q876fs
LIHC	TCGA-DD-A1EG-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000419169.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183506279:183506350:183507514:183507575:183510118:183510238,	183507515	183507575	183507550	183507550	Frame_Shift_Del	T	-	p.F453fs
LIHC	TCGA-DD-A1EG-01	SMG7	ENST00000508461.1,ENST00000507469.1,ENST00000367537.3	chr1	183515100:183515472:183516237:183516387:183518342:183518423,	183516238	183516387	183516383	183516383	Frame_Shift_Del	T	-	p.L946fs
LIHC	TCGA-DD-A1EG-01	NCF2	ENST00000367535.3,ENST00000367536.1	chr1	183542319:183542427:183543621:183543756:183546733:183546842,	183543622	183543756	183543706	183543706	Frame_Shift_Del	T	-	p.K139fs
LIHC	TCGA-DD-A1EG-01	TRMT1L	ENST00000367506.5	chr1	185119510:185119624:185120956:185121067:185125609:185126113,	185120957	185121067	185120997	185120997	Frame_Shift_Del	A	-	p.F102fs
LIHC	TCGA-DD-A1EG-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185143503:185144245:185149522:185149582:185151077:185151189,	185149523	185149582	185149525	185149525	Frame_Shift_Del	T	-	p.S323fs
LIHC	TCGA-DD-A1EG-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185183638:185183787:185190980:185191168:185200708:185200840,	185190981	185191168	185191078	185191078	Frame_Shift_Del	T	-	p.V740fs
LIHC	TCGA-DD-A1EG-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185183638:185183787:185190980:185191168:185200708:185200840,	185190981	185191168	185191098	185191098	Frame_Shift_Del	C	-	p.P747fs
LIHC	TCGA-DD-A1EG-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186043872:186044023:186045559:186045754:186047238:186047352,	186045560	186045754	186045649	186045649	Frame_Shift_Del	C	-	p.P2794fs
LIHC	TCGA-DD-A1EG-01	PRG4	ENST00000367483.4,ENST00000445192.2,ENST00000367484.3	chr1	186270723:186270843:186273925:186274054:186275449:186275610,186273239:186273389:186273925:186274054:186275449:186275610,	186273926	186274054	186273941	186273941	Frame_Shift_Del	A	-	p.E162fs
LIHC	TCGA-DD-A1EG-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186276358	186276358	Frame_Shift_Del	C	-	p.P503fs
LIHC	TCGA-DD-A1EG-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277765	186277765	Frame_Shift_Del	A	-	p.K972fs
LIHC	TCGA-DD-A1EG-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277936	186277936	Frame_Shift_Del	A	-	p.K1030fs
LIHC	TCGA-DD-A1EG-01	UCHL5	ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998661:192998787:193018875:193018981:193020883:193020947,	193018876	193018981	193018885	193018885	Frame_Shift_Del	A	-	p.F79fs
LIHC	TCGA-DD-A1EG-01	UCHL5	ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998661:192998787:193018875:193018981:193020883:193020947,	193018876	193018981	193018955	193018955	Frame_Shift_Del	A	-	p.F56fs
LIHC	TCGA-DD-A1EG-01	CDC73	ENST00000367435.3	chr1	193110979:193111196:193116996:193117095:193119433:193119512,	193116997	193117095	193116999	193116999	Frame_Shift_Del	T	-	p.N244fs
LIHC	TCGA-DD-A1EG-01	KCNT2	ENST00000610076.1	chr1	196309618:196309700:196311208:196311379:196342269:196342378,	196311209	196311379	196311262	196311262	Frame_Shift_Del	A	-	p.F500fs
LIHC	TCGA-DD-A1EG-01	KCNT2	ENST00000294725.9,ENST00000367433.5,ENST00000451324.2,ENST00000498426.1	chr1	196309618:196309700:196311208:196311358:196342269:196342378,	196311209	196311358	196311262	196311262	Frame_Shift_Del	A	-	p.F500fs
LIHC	TCGA-DD-A1EG-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196712581:196712758:196714946:196715129:196716240:196716634,	196714947	196715129	196714967	196714967	Frame_Shift_Del	C	-	p.P1114fs
LIHC	TCGA-DD-A1EG-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196712581:196712758:196714946:196715129:196716240:196716634,	196714947	196715129	196715119	196715119	Frame_Shift_Del	A	-	p.P1161fs
LIHC	TCGA-DD-A1EG-01	CFHR3	ENST00000367425.4	chr1	196748926:196749103:196757345:196757528:196759174:196759357,	196757346	196757528	196757356	196757356	Frame_Shift_Del	A	-	p.S147fs
LIHC	TCGA-DD-A1EG-01	CFHR5	ENST00000256785.4,ENST00000367414.5	chr1	196971611:196971794:196973790:196973973:196977616:196978804,	196973791	196973973	196973915	196973915	Frame_Shift_Del	G	-	p.Q509fs
LIHC	TCGA-DD-A1EG-01	F13B	ENST00000367412.1	chr1	197008320:197008541:197009651:197009865:197019826:197019975,	197009652	197009865	197009823	197009823	Frame_Shift_Del	A	-	p.L596fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197059979:197060171:197061036:197061186:197062181:197062391,	197061037	197061186	197061058	197061058	Frame_Shift_Del	A	-	p.V3141fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197059979:197060171:197061036:197061186:197062181:197062391,	197061037	197061186	197061105	197061105	Frame_Shift_Del	T	-	p.R3126fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070637	197070637	Frame_Shift_Del	T	-	p.I2583fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071729	197071729	Frame_Shift_Del	T	-	p.T2218fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071850	197071850	Frame_Shift_Del	A	-	p.F2177fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072497	197072497	Frame_Shift_Del	T	-	p.T1962fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073354	197073354	Frame_Shift_Del	A	-	p.L1676fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197074049	197074049	Frame_Shift_Del	T	-	p.K1444fs
LIHC	TCGA-DD-A1EG-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390634	197390634	Frame_Shift_Del	C	-	p.S559fs
LIHC	TCGA-DD-A1EG-01	DENND1B	ENST00000235453.4,ENST00000294737.7,ENST00000400967.2,ENST00000422998.1,ENST00000496935.1	chr1	197611902:197611951:197614819:197614873:197621364:197621445,	197614820	197614873	197614846	197614846	Frame_Shift_Del	T	-	p.T149fs
LIHC	TCGA-DD-A1EG-01	PTPRC	ENST00000352140.3,ENST00000367376.2,ENST00000529828.1,ENST00000442510.2,ENST00000418674.1	chr1	198661475:198661502:198665840:198666038:198668692:198668749,	198665841	198666038	198665937	198665937	Frame_Shift_Del	A	-	p.E64fs
LIHC	TCGA-DD-A1EG-01	NR5A2	ENST00000367357.3,ENST00000367362.3,ENST00000236914.3,ENST00000544748.1	chr1	200012937:200013020:200014570:200014712:200017299:200017946,	200014571	200014712	200014574	200014574	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-DD-A1EG-01	IPO9	ENST00000361565.4,ENST00000464348.1	chr1	201816679:201816766:201817520:201817722:201821231:201821320,	201817521	201817722	201817523	201817523	Frame_Shift_Del	A	-	p.A105fs
LIHC	TCGA-DD-A1EG-01	IPO9	ENST00000361565.4	chr1	201824251:201824310:201824910:201825062:201826223:201826322,	201824911	201825062	201824947	201824947	Frame_Shift_Del	T	-	p.I336fs
LIHC	TCGA-DD-A1EG-01	IPO9	ENST00000361565.4	chr1	201837775:201837924:201838717:201838846:201839710:201839986,	201838718	201838846	201838763	201838763	Frame_Shift_Del	C	-	p.P684fs
LIHC	TCGA-DD-A1EG-01	IPO9	ENST00000361565.4	chr1	201839710:201839986:201840288:201840455:201841955:201842089,	201840289	201840455	201840448	201840448	Frame_Shift_Del	A	-	p.K857fs
LIHC	TCGA-DD-A1EG-01	IPO9	ENST00000361565.4	chr1	201840288:201840455:201841955:201842089:201843377:201843500,	201841956	201842089	201842086	201842086	Frame_Shift_Del	A	-	p.K903fs
LIHC	TCGA-DD-A1EG-01	PTPN7	ENST00000496197.1,ENST00000308986.5,ENST00000477554.1,ENST00000367279.4,ENST00000477625.1,ENST00000492977.1,ENST00000543735.1,ENST00000480836.1,ENST00000309017.3,ENST00000495688.1	chr1	202122852:202122963:202123313:202123451:202124660:202124737,	202123314	202123451	202123415	202123415	Frame_Shift_Del	G	-	p.Q274fs
LIHC	TCGA-DD-A1EG-01	LGR6	ENST00000487787.1,ENST00000308543.3,ENST00000367278.3,ENST00000255432.7	chr1	202245433:202245649:202249908:202249980:202266635:202266704,	202249909	202249980	202249939	202249939	Frame_Shift_Del	G	-	p.L225fs
LIHC	TCGA-DD-A1EG-01	PPP1R12B	ENST00000608999.1,ENST00000356764.2,ENST00000336894.4,ENST00000480184.1	chr1	202391747:202391866:202394693:202394853:202396167:202396312,	202394694	202394853	202394779	202394779	Frame_Shift_Del	G	-	p.E209fs
LIHC	TCGA-DD-A1EG-01	PPP1R12B	ENST00000608999.1,ENST00000336894.4,ENST00000480184.1,ENST00000476364.1	chr1	202400607:202400747:202403783:202403896:202406948:202407152,	202403784	202403896	202403865	202403865	Frame_Shift_Del	A	-	p.Q408fs
LIHC	TCGA-DD-A1EG-01	PPP1R12B	ENST00000290419.5	chr1	202538274:202538325:202544129:202544314:202549601:202549684,	202544130	202544314	202544206	202544206	Frame_Shift_Del	C	-	p.T206fs
LIHC	TCGA-DD-A1EG-01	PPP1R12B	ENST00000367270.4	chr1	202538274:202538325:202544129:202544310:202549601:202549684,	202544130	202544310	202544206	202544206	Frame_Shift_Del	C	-	p.T206fs
LIHC	TCGA-DD-A1EG-01	KDM5B	ENST00000367265.3,ENST00000235790.4	chr1	202733176:202733273:202736053:202736188:202742245:202742412,	202736054	202736188	202736085	202736085	Frame_Shift_Del	G	-	p.P227fs
LIHC	TCGA-DD-A1EG-01	KLHL12	ENST00000435533.3,ENST00000367261.3	chr1	202861532:202861787:202862366:202862553:202863311:202863410,	202862367	202862553	202862508	202862508	Frame_Shift_Del	C	-	p.G480fs
LIHC	TCGA-DD-A1EG-01	TMEM183A	ENST00000468449.1	chr1	202984019:202984176:202985087:202985268:202987608:202987689,202984019:202984176:202985087:202985268:202986883:202987047,	202985088	202985268	202985108	202985108	Frame_Shift_Del	C	-	p.S183fs
LIHC	TCGA-DD-A1EG-01	PPFIA4	ENST00000295706.4,ENST00000600426.1,ENST00000447715.2,ENST00000414050.2	chr1	203018045:203018108:203018803:203018895:203020896:203021005,	203018804	203018895	203018864	203018864	Frame_Shift_Del	G	-	p.G474fs
LIHC	TCGA-DD-A1EG-01	CHI3L1	ENST00000255409.3	chr1	203153703:203153760:203154311:203154513:203155443:203155473,	203154312	203154513	203154500	203154500	Frame_Shift_Del	T	-	p.K23fs
LIHC	TCGA-DD-A1EG-01	ATP2B4	ENST00000391954.2,ENST00000367218.3,ENST00000367219.3	chr1	203595927:203596347:203651869:203652526:203667284:203667482,	203651870	203652526	203652508	203652508	Frame_Shift_Del	A	-	p.K59fs
LIHC	TCGA-DD-A1EG-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667346	203667346	Frame_Shift_Del	C	-	p.I85fs
LIHC	TCGA-DD-A1EG-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000341360.2	chr1	203669925:203670051:203671171:203671207:203672779:203672941,	203671172	203671207	203671174	203671174	Frame_Shift_Del	A	-	p.K303fs
LIHC	TCGA-DD-A1EG-01	ATP2B4	ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203691706:203691817:203693008:203693116:203696522:203696699,	203693009	203693116	203693109	203693109	Frame_Shift_Del	G	-	p.W1042fs
LIHC	TCGA-DD-A1EG-01	ATP2B4	ENST00000391954.2,ENST00000484746.1,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203696595:203696699:203702350:203702528:203708673:203708772,	203702351	203702528	203702484	203702484	Frame_Shift_Del	C	-	p.S1148fs
LIHC	TCGA-DD-A1EG-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816504	203816504	Frame_Shift_Del	A	-	p.E412fs
LIHC	TCGA-DD-A1EG-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816537	203816537	Frame_Shift_Del	A	-	p.Q423fs
LIHC	TCGA-DD-A1EG-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816590	203816590	Frame_Shift_Del	A	-	p.K442fs
LIHC	TCGA-DD-A1EG-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204191233:204191907:204192589:204192713:204197210:204197356,	204192590	204192713	204192651	204192651	Frame_Shift_Del	G	-	p.L1032fs
LIHC	TCGA-DD-A1EG-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204418312:204418424:204418977:204419145:204423796:204423919,	204418978	204419145	204419065	204419065	Frame_Shift_Del	G	-	p.P717fs
LIHC	TCGA-DD-A1EG-01	RBBP5	ENST00000264515.6,ENST00000367164.1	chr1	205066453:205066523:205068116:205068234:205068868:205068940,	205068117	205068234	205068230	205068230	Frame_Shift_Del	T	-	p.N328fs
LIHC	TCGA-DD-A1EG-01	DSTYK	ENST00000367161.3	chr1	205117332:205117467:205119807:205119922:205126400:205126514,205111632:205116873:205119807:205119922:205126400:205126514,	205119808	205119922	205119842	205119842	Frame_Shift_Del	C	-	p.G811fs
LIHC	TCGA-DD-A1EG-01	TMCC2	ENST00000358024.3,ENST00000545499.1,ENST00000495538.1	chr1	205210641:205211172:205238077:205239012:205240247:205240383,	205238078	205239012	205238740	205238740	Frame_Shift_Del	C	-	p.S470fs
LIHC	TCGA-DD-A1EG-01	CDK18	ENST00000504648.1,ENST00000506784.1,ENST00000509056.1,ENST00000429964.2,ENST00000360066.2,ENST00000489617.1,ENST00000515494.1,ENST00000505932.1	chr1	205496955:205497045:205497175:205497296:205498126:205498224,	205497176	205497296	205497281	205497281	Frame_Shift_Del	C	-	p.T320fs
LIHC	TCGA-DD-A1EG-01	SLC45A3	ENST00000367145.3	chr1	205630992:205631254:205631960:205632746:205633612:205634014,	205631961	205632746	205632404	205632404	Frame_Shift_Del	C	-	p.G172fs
LIHC	TCGA-DD-A1EG-01	CTSE	ENST00000361052.3,ENST00000360218.2	chr1	206317605:206317644:206318310:206318467:206319100:206319218,	206318311	206318467	206318385	206318385	Frame_Shift_Del	C	-	p.S48fs
LIHC	TCGA-DD-A1EG-01	CTSE	ENST00000361052.3,ENST00000360218.2	chr1	206317605:206317644:206318310:206318467:206319100:206319218,	206318311	206318467	206318456	206318456	Frame_Shift_Del	A	-	p.N72fs
LIHC	TCGA-DD-A1EG-01	MAPKAPK2	ENST00000367103.3	chr1	206904989:206905070:206905183:206905264:206905919:206907628,	206905184	206905264	206905251	206905251	Frame_Shift_Del	G	-	p.W349fs
LIHC	TCGA-DD-A1EG-01	PIGR	ENST00000356495.4	chr1	207105015:207105147:207105800:207105922:207106330:207106511,	207105801	207105922	207105879	207105879	Frame_Shift_Del	G	-	p.L644fs
LIHC	TCGA-DD-A1EG-01	C4BPB	ENST00000451804.2,ENST00000367076.3	chr1	207262886:207262934:207263655:207263826:207264988:207265050,	207263656	207263826	207263800	207263800	Frame_Shift_Del	G	-	p.W69fs
LIHC	TCGA-DD-A1EG-01	C4BPB	ENST00000492730.1,ENST00000391923.1,ENST00000367078.3,ENST00000243611.5,ENST00000452902.2	chr1	207262886:207262934:207263652:207263826:207264988:207265050,	207263653	207263826	207263800	207263800	Frame_Shift_Del	G	-	p.W69fs
LIHC	TCGA-DD-A1EG-01	CD55	ENST00000482390.2,ENST00000391920.4,ENST00000367067.4,ENST00000367063.2,ENST00000391921.4,ENST00000367062.4,ENST00000314754.8,ENST00000488171.1,ENST00000367064.3,ENST00000367065.5	chr1	207504452:207504641:207510037:207510163:207510673:207510754,	207510038	207510163	207510138	207510138	Frame_Shift_Del	A	-	p.T318fs
LIHC	TCGA-DD-A1EG-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209806414:209806478:209807791:209807983:209811252:209811326,	209807792	209807983	209807795	209807795	Frame_Shift_Del	C	-	p.G187fs
LIHC	TCGA-DD-A1EG-01	IRF6	ENST00000367021.3,ENST00000456314.1	chr1	209969692:209969897:209974584:209974761:209975316:209975388,	209974585	209974761	209974602	209974602	Frame_Shift_Del	C	-	p.E53fs
LIHC	TCGA-DD-A1EG-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000391905.3,ENST00000426968.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210577807:210578023:210591497:210591669:210637848:210637999,	210591498	210591669	210591635	210591635	Frame_Shift_Del	C	-	p.I274fs
LIHC	TCGA-DD-A1EG-01	TRAF5	ENST00000488428.1	chr1	211529708:211529810:211533223:211533418:211534043:211534121,	211533224	211533418	211533372	211533372	Frame_Shift_Del	A	-	p.E166fs
LIHC	TCGA-DD-A1EG-01	TRAF5	ENST00000336184.2,ENST00000261464.5,ENST00000367004.3	chr1	211529708:211529810:211533253:211533418:211534043:211534121,	211533254	211533418	211533372	211533372	Frame_Shift_Del	A	-	p.E166fs
LIHC	TCGA-DD-A1EG-01	LPGAT1	ENST00000366996.1,ENST00000366997.4	chr1	211952341:211952386:211956570:211956844:211960973:211961069,	211956571	211956844	211956640	211956640	Frame_Shift_Del	T	-	p.I221fs
LIHC	TCGA-DD-A1EG-01	LPGAT1	ENST00000366996.1,ENST00000366997.4	chr1	211952341:211952386:211956570:211956844:211960973:211961069,	211956571	211956844	211956649	211956649	Frame_Shift_Del	C	-	p.A217fs
LIHC	TCGA-DD-A1EG-01	LPGAT1	ENST00000366996.1,ENST00000366997.4	chr1	211952341:211952386:211956570:211956844:211960973:211961069,	211956571	211956844	211956756	211956756	Frame_Shift_Del	A	-	p.L181fs
LIHC	TCGA-DD-A1EG-01	INTS7	ENST00000475798.1,ENST00000366994.3,ENST00000469606.1,ENST00000440600.2	chr1	212119948:212120047:212125910:212126043:212139771:212139840,	212125911	212126043	212125924	212125924	Frame_Shift_Del	G	-	p.P768fs
LIHC	TCGA-DD-A1EG-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000366992.3,ENST00000440600.2,ENST00000366993.3	chr1	212156017:212156152:212161227:212161345:212179980:212180103,	212161228	212161345	212161250	212161250	Frame_Shift_Del	T	-	p.K325fs
LIHC	TCGA-DD-A1EG-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212241940:212242045:212245442:212245555:212251514:212251604,	212245443	212245555	212245449	212245449	Frame_Shift_Del	T	-	p.I310fs
LIHC	TCGA-DD-A1EG-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212253956:212254092:212273593:212274426:212276183:212276604,	212273594	212274426	212273948	212273948	Frame_Shift_Del	C	-	p.S539fs
LIHC	TCGA-DD-A1EG-01	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212506838:212506940:212515529:212515622:212519144:212519225,	212515530	212515622	212515571	212515571	Frame_Shift_Del	T	-	p.D174fs
LIHC	TCGA-DD-A1EG-01	ATF3	ENST00000465155.1,ENST00000341491.4	chr1	212782256:212782272:212788359:212788603:212791468:212791576,	212788360	212788603	212788434	212788434	Frame_Shift_Del	C	-	p.S24fs
LIHC	TCGA-DD-A1EG-01	ATF3	ENST00000465155.1,ENST00000341491.4	chr1	212782256:212782272:212788359:212788603:212791468:212791576,	212788360	212788603	212788594	212788594	Frame_Shift_Del	A	-	p.T77fs
LIHC	TCGA-DD-A1EG-01	VASH2	ENST00000366965.2	chr1	213124008:213124082:213124680:213125160:213134507:213134596,	213124681	213125160	213125020	213125020	Frame_Shift_Del	G	-	p.G46fs
LIHC	TCGA-DD-A1EG-01	SMYD2	ENST00000471645.1	chr1	214503510:214503621:214504292:214507651:214510046:214510177,	214504293	214507651	214504329	214504329	Frame_Shift_Del	C	-	p.P286fs
LIHC	TCGA-DD-A1EG-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214549561:214549780:214551301:214551445:214556653:214558131,	214551302	214551445	214551346	214551346	Frame_Shift_Del	C	-	p.E883fs
LIHC	TCGA-DD-A1EG-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214556732	214556732	Frame_Shift_Del	T	-	p.K822fs
LIHC	TCGA-DD-A1EG-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557233	214557233	Frame_Shift_Del	G	-	p.A655fs
LIHC	TCGA-DD-A1EG-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813982	214813982	Frame_Shift_Del	A	-	p.L767fs
LIHC	TCGA-DD-A1EG-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814471	214814471	Frame_Shift_Del	A	-	p.L930fs
LIHC	TCGA-DD-A1EG-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214816105	214816105	Frame_Shift_Del	C	-	p.S1475fs
LIHC	TCGA-DD-A1EG-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818035	214818035	Frame_Shift_Del	A	-	p.K1708fs
LIHC	TCGA-DD-A1EG-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818125	214818125	Frame_Shift_Del	A	-	p.K1738fs
LIHC	TCGA-DD-A1EG-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214820390	214820390	Frame_Shift_Del	A	-	p.K2493fs
LIHC	TCGA-DD-A1EG-01	GPATCH2	ENST00000366935.3	chr1	217600333:217604707:217622590:217622679:217665021:217665092,	217622591	217622679	217622622	217622622	Frame_Shift_Del	T	-	p.K445fs
LIHC	TCGA-DD-A1EG-01	GPATCH2	ENST00000366935.3,ENST00000366934.3	chr1	217783662:217783742:217784230:217784413:217787482:217787544,	217784231	217784413	217784329	217784329	Frame_Shift_Del	T	-	p.K307fs
LIHC	TCGA-DD-A1EG-01	SLC30A10	ENST00000536446.1,ENST00000356609.2,ENST00000366926.3	chr1	220088790:220089290:220091596:220091836:220100369:220100447,	220091597	220091836	220091756	220091756	Frame_Shift_Del	G	-	p.L267fs
LIHC	TCGA-DD-A1EG-01	BPNT1	ENST00000414869.2,ENST00000322067.7,ENST00000469520.2,ENST00000544404.1	chr1	220233027:220233133:220236098:220236296:220239414:220239459,220233027:220233133:220236098:220236296:220240643:220240735,	220236099	220236296	220236259	220236259	Frame_Shift_Del	C	-	p.G171fs
LIHC	TCGA-DD-A1EG-01	RAB3GAP2	ENST00000474966.1,ENST00000358951.2	chr1	220324597:220324748:220324947:220325106:220326526:220326748,	220324948	220325106	220325047	220325047	Frame_Shift_Del	C	-	p.G1309fs
LIHC	TCGA-DD-A1EG-01	MARK1	ENST00000366917.4	chr1	220826442:220826694:220831131:220831176:220835153:220835800,	220831132	220831176	220831164	220831164	Frame_Shift_Del	C	-	p.T674fs
LIHC	TCGA-DD-A1EG-01	MARC2	ENST00000425560.1,ENST00000366913.3	chr1	220934999:220935162:220936251:220936392:220953359:220953421,	220936252	220936392	220936383	220936383	Frame_Shift_Del	T	-	p.A247fs
LIHC	TCGA-DD-A1EG-01	TAF1A	ENST00000350027.4,ENST00000366890.1,ENST00000352967.4,ENST00000391882.1	chr1	222734705:222734860:222736514:222736638:222737400:222737467,	222736515	222736638	222736527	222736527	Frame_Shift_Del	T	-	p.N358fs
LIHC	TCGA-DD-A1EG-01	AIDA	ENST00000474863.1,ENST00000340020.6,ENST00000541237.1	chr1	222842918:222843331:222843474:222843592:222846654:222846777,	222843475	222843592	222843548	222843548	Frame_Shift_Del	T	-	p.R251fs
LIHC	TCGA-DD-A1EG-01	BROX	ENST00000473962.1,ENST00000426638.1,ENST00000537020.1,ENST00000539697.1	chr1	222886742:222886758:222889025:222889142:222892266:222892373,	222889026	222889142	222889071	222889071	Frame_Shift_Del	A	-	p.L10fs
LIHC	TCGA-DD-A1EG-01	SUSD4	ENST00000483818.1,ENST00000494793.2,ENST00000608996.1,ENST00000344029.6,ENST00000478605.1,ENST00000366878.4	chr1	223441843:223442017:223465780:223465993:223536619:223536679,	223465781	223465993	223465962	223465962	Frame_Shift_Del	G	-	p.P60fs
LIHC	TCGA-DD-A1EG-01	CAPN8	ENST00000419193.2	chr1	223803671:223803847:223806994:223807155:223807893:223807968,	223806995	223807155	223807027	223807027	Frame_Shift_Del	C	-	p.G368fs
LIHC	TCGA-DD-A1EG-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934727	223934727	Frame_Shift_Del	G	-	p.G198fs
LIHC	TCGA-DD-A1EG-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934796	223934796	Frame_Shift_Del	C	-	p.P222fs
LIHC	TCGA-DD-A1EG-01	TP53BP2	ENST00000498843.1,ENST00000343537.7,ENST00000391878.2	chr1	223983875:223984292:223985916:223986379:223987600:223987749,	223985917	223986379	223985923	223985923	Frame_Shift_Del	A	-	p.S520fs
LIHC	TCGA-DD-A1EG-01	TP53BP2	ENST00000343537.7,ENST00000391878.2	chr1	223990432:223990597:223990972:223991154:223991875:223992050,	223990973	223991154	223991084	223991084	Frame_Shift_Del	T	-	p.K111fs
LIHC	TCGA-DD-A1EG-01	TP53BP2	ENST00000472180.1,ENST00000343537.7	chr1	224001941:224002055:224008921:224009069:224033355:224033496,	224008922	224009069	224009061	224009061	Frame_Shift_Del	A	-	p.L12fs
LIHC	TCGA-DD-A1EG-01	DEGS1	ENST00000323699.4,ENST00000391877.3	chr1	224370967:224371120:224377278:224378021:224380033:224380055,	224377279	224378021	224377311	224377311	Frame_Shift_Del	C	-	p.P39fs
LIHC	TCGA-DD-A1EG-01	DEGS1	ENST00000323699.4,ENST00000391877.3	chr1	224370967:224371120:224377278:224378021:224380033:224380055,	224377279	224378021	224377880	224377880	Frame_Shift_Del	T	-	p.H228fs
LIHC	TCGA-DD-A1EG-01	DEGS1	ENST00000323699.4,ENST00000391877.3	chr1	224370967:224371120:224377278:224378021:224380033:224380055,	224377279	224378021	224377991	224377991	Frame_Shift_Del	C	-	p.F265fs
LIHC	TCGA-DD-A1EG-01	NVL	ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000361463.3,ENST00000469075.1,ENST00000281701.6	chr1	224475476:224475695:224477185:224477435:224481968:224482043,	224477186	224477435	224477234	224477234	Frame_Shift_Del	T	-	p.K509fs
LIHC	TCGA-DD-A1EG-01	NVL	ENST00000467882.1,ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000361463.3,ENST00000469075.1,ENST00000281701.6	chr1	224481968:224482113:224484202:224484320:224488263:224488365,	224484203	224484320	224484249	224484249	Frame_Shift_Del	T	-	p.K378fs
LIHC	TCGA-DD-A1EG-01	WDR26	ENST00000295024.6,ENST00000414423.2,ENST00000480676.2	chr1	224588651:224588771:224592131:224592272:224599128:224599186,	224592132	224592272	224592245	224592245	Frame_Shift_Del	T	-	p.T396fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000400952.3,ENST00000366849.1,ENST00000439375.2	chr1	225161792:225161855:225190484:225190629:225195114:225195246,	225190485	225190629	225190489	225190489	Frame_Shift_Del	T	-	p.F279fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211346	225211346	Frame_Shift_Del	T	-	p.Y379fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211543	225211543	Frame_Shift_Del	A	-	p.E445fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225231445:225231491:225231587:225231685:225237911:225238078,	225231588	225231685	225231645	225231645	Frame_Shift_Del	A	-	p.V624fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225266908:225267250:225268080:225268450:225270250:225270441,	225268081	225268450	225268312	225268312	Frame_Shift_Del	A	-	p.K1001fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225266908:225267250:225268080:225268450:225270250:225270441,	225268081	225268450	225268445	225268445	Frame_Shift_Del	A	-	p.E1044fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000328556.5	chr1	225311228:225311316:225328469:225328723:225332098:225332330,	225328470	225328723	225328686	225328686	Frame_Shift_Del	A	-	p.K1474fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225428294:225428524:225438357:225438405:225440002:225440119,	225438358	225438405	225438391	225438391	Frame_Shift_Del	G	-	p.R2240fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225488570:225488732:225490857:225491049:225492609:225492791,	225490858	225491049	225491024	225491024	Frame_Shift_Del	A	-	p.E2840fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225567860:225568024:225569084:225569281:225576080:225576193,	225569085	225569281	225569092	225569092	Frame_Shift_Del	C	-	p.D4194fs
LIHC	TCGA-DD-A1EG-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225569084:225569281:225576080:225576193:225577435:225577575,	225576081	225576193	225576121	225576121	Frame_Shift_Del	T	-	p.I4271fs
LIHC	TCGA-DD-A1EG-01	LBR	ENST00000338179.2,ENST00000272163.4	chr1	225597992:225598118:225599038:225599142:225600155:225600347,	225599039	225599142	225599084	225599084	Frame_Shift_Del	A	-	p.F381fs
LIHC	TCGA-DD-A1EG-01	ENAH	ENST00000284563.6	chr1	225718255:225718340:225723208:225723265:225742607:225742757,	225723209	225723265	225723242	225723242	Frame_Shift_Del	G	-	p.Q125fs
LIHC	TCGA-DD-A1EG-01	SRP9	ENST00000366838.1	chr1	225971001:225971070:225976735:225976843:225976941:225977226,	225976736	225976843	225976759	225976759	Frame_Shift_Del	T	-	p.T55fs
LIHC	TCGA-DD-A1EG-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.P133fs
LIHC	TCGA-DD-A1EG-01	TMEM63A	ENST00000366835.3	chr1	226036192:226036255:226036597:226036713:226037612:226037780,	226036598	226036713	226036634	226036634	Frame_Shift_Del	A	-	p.F717fs
LIHC	TCGA-DD-A1EG-01	TMEM63A	ENST00000366835.3,ENST00000487971.1	chr1	226044404:226044439:226044610:226044717:226046895:226047049,	226044611	226044717	226044691	226044691	Frame_Shift_Del	G	-	p.P468fs
LIHC	TCGA-DD-A1EG-01	H3F3A	ENST00000366815.3,ENST00000366816.1,ENST00000366813.1	chr1	226252029:226252180:226253356:226253510:226259051:226259224,	226253357	226253510	226253421	226253421	Frame_Shift_Del	A	-	p.K65fs
LIHC	TCGA-DD-A1EG-01	LIN9	ENST00000366808.1,ENST00000328205.5,ENST00000359525.2	chr1	226475393:226475498:226483542:226483647:226485419:226485511,	226483543	226483647	226483572	226483572	Frame_Shift_Del	T	-	p.R95fs
LIHC	TCGA-DD-A1EG-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226923671	226923671	Frame_Shift_Del	C	-	p.D497fs
LIHC	TCGA-DD-A1EG-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226924328	226924328	Frame_Shift_Del	T	-	p.R278fs
LIHC	TCGA-DD-A1EG-01	PSEN2	ENST00000422240.2,ENST00000366783.3,ENST00000496965.1,ENST00000366782.1,ENST00000391872.2,ENST00000472139.2,ENST00000460775.1	chr1	227076529:227076750:227077735:227077834:227078978:227079045,	227077736	227077834	227077790	227077790	Frame_Shift_Del	C	-	p.A314fs
LIHC	TCGA-DD-A1EG-01	CDC42BPA	ENST00000366769.3,ENST00000334218.5,ENST00000366767.3,ENST00000448940.1	chr1	227227831:227227937:227235627:227235711:227257477:227257554,	227235628	227235711	227235661	227235661	Frame_Shift_Del	T	-	p.K985fs
LIHC	TCGA-DD-A1EG-01	CDC42BPA	ENST00000366767.3	chr1	227288692:227288940:227300012:227300123:227307504:227307638,	227300013	227300123	227300032	227300032	Frame_Shift_Del	T	-	p.N661fs
LIHC	TCGA-DD-A1EG-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227300012:227300123:227300371:227300614:227307504:227307638,	227300372	227300614	227300583	227300583	Frame_Shift_Del	T	-	p.N560fs
LIHC	TCGA-DD-A1EG-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366767.3,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227307504:227307638:227316809:227316932:227327276:227327443,	227316810	227316932	227316829	227316829	Frame_Shift_Del	T	-	p.K498fs
LIHC	TCGA-DD-A1EG-01	GUK1	ENST00000366722.1	chr1	228335385:228335400:228336071:228336240:228336365:228336392,	228336072	228336240	228336205	228336205	Frame_Shift_Del	G	-	p.L201fs
LIHC	TCGA-DD-A1EG-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6,ENST00000422127.1	chr1	228479598:228479862:228480223:228480487:228481053:228481317,	228480224	228480487	228480253	228480253	Frame_Shift_Del	A	-	p.K3974fs
LIHC	TCGA-DD-A1EG-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228486170:228486418:228486959:228487223:228487582:228487846,	228486960	228487223	228487010	228487010	Frame_Shift_Del	G	-	p.G4421fs
LIHC	TCGA-DD-A1EG-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228487582:228487846:228491375:228491639:228492003:228492045,	228491376	228491639	228491426	228491426	Frame_Shift_Del	G	-	p.G4597fs
LIHC	TCGA-DD-A1EG-01	TRIM17	ENST00000295033.3,ENST00000456946.2,ENST00000366698.2,ENST00000479800.1	chr1	228598646:228598877:228601497:228601593:228602344:228602700,	228601498	228601593	228601560	228601560	Frame_Shift_Del	C	-	p.E155fs
LIHC	TCGA-DD-A1EG-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422305	229422305	Frame_Shift_Del	A	-	p.E35fs
LIHC	TCGA-DD-A1EG-01	RAB4A	ENST00000366690.4	chr1	229422232:229422313:229424475:229424590:229431594:229431657,	229424476	229424590	229424557	229424557	Frame_Shift_Del	A	-	p.Q65fs
LIHC	TCGA-DD-A1EG-01	NUP133	ENST00000537506.1,ENST00000261396.3,ENST00000490352.1	chr1	229577642:229577787:229580660:229580749:229584872:229584937,	229580661	229580749	229580665	229580665	Frame_Shift_Del	T	-	p.K1110fs
LIHC	TCGA-DD-A1EG-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229622117:229622275:229623212:229623360:229625701:229625849,	229623213	229623360	229623288	229623288	Frame_Shift_Del	T	-	p.S423fs
LIHC	TCGA-DD-A1EG-01	ABCB10	ENST00000344517.4	chr1	229657338:229657382:229661682:229661863:229662975:229663055,	229661683	229661863	229661853	229661853	Frame_Shift_Del	A	-	p.L579fs
LIHC	TCGA-DD-A1EG-01	GALNT2	ENST00000543760.1,ENST00000366672.4	chr1	230384929:230385017:230386202:230386306:230390963:230391090,	230386203	230386306	230386289	230386289	Frame_Shift_Del	G	-	p.W331fs
LIHC	TCGA-DD-A1EG-01	GALNT2	ENST00000485438.1,ENST00000543760.1,ENST00000366672.4	chr1	230400986:230401113:230410190:230410310:230415048:230415563,	230410191	230410310	230410262	230410262	Frame_Shift_Del	G	-	p.P504fs
LIHC	TCGA-DD-A1EG-01	COG2	ENST00000535166.1,ENST00000366668.3,ENST00000366669.4,ENST00000494371.1,ENST00000468893.2,ENST00000534989.1	chr1	230807261:230807386:230810743:230810870:230814658:230814798,	230810744	230810870	230810836	230810836	Frame_Shift_Del	T	-	p.L272fs
LIHC	TCGA-DD-A1EG-01	CAPN9	ENST00000354537.1,ENST00000366666.2,ENST00000271971.2	chr1	230923267:230923348:230925877:230925935:230927609:230927674,	230925878	230925935	230925930	230925930	Frame_Shift_Del	A	-	p.Q525fs
LIHC	TCGA-DD-A1EG-01	TTC13	ENST00000366662.4,ENST00000414259.1,ENST00000366661.4	chr1	231069561:231069607:231075131:231075242:231076185:231076302,	231075132	231075242	231075190	231075190	Frame_Shift_Del	T	-	p.N281fs
LIHC	TCGA-DD-A1EG-01	GNPAT	ENST00000416000.1,ENST00000366647.4	chr1	231376961:231377202:231386706:231386889:231396252:231396399,	231386707	231386889	231386716	231386716	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-DD-A1EG-01	NTPCR	ENST00000366628.5,ENST00000490807.1,ENST00000366627.4	chr1	233086587:233086878:233091302:233091465:233092092:233092189,233086385:233086490:233091302:233091465:233092092:233092189,	233091303	233091465	233091444	233091444	Frame_Shift_Del	G	-	p.R59fs
LIHC	TCGA-DD-A1EG-01	NTPCR	ENST00000496662.1	chr1	233092097:233092189:233105654:233105864:233113908:233114228,233086385:233086490:233105654:233105864:233113908:233114228,	233105655	233105864	233105706	233105706	Frame_Shift_Del	G	-	p.G116fs
LIHC	TCGA-DD-A1EG-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323876	235323876	Frame_Shift_Del	T	-	p.K105fs
LIHC	TCGA-DD-A1EG-01	B3GALNT2	ENST00000366600.3,ENST00000477694.1	chr1	235618870:235618996:235621910:235622094:235628952:235629031,	235621911	235622094	235621925	235621925	Frame_Shift_Del	C	-	p.L337fs
LIHC	TCGA-DD-A1EG-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235856649:235856786:235860382:235860572:235866046:235866277,	235860383	235860572	235860519	235860519	Frame_Shift_Del	G	-	p.P3476fs
LIHC	TCGA-DD-A1EG-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235860382:235860572:235866046:235866277:235872390:235872608,	235866047	235866277	235866205	235866205	Frame_Shift_Del	T	-	p.T3406fs
LIHC	TCGA-DD-A1EG-01	NID1	ENST00000264187.6	chr1	236154185:236154358:236156944:236157172:236175220:236175343,	236156945	236157172	236156947	236156947	Frame_Shift_Del	G	-	p.P918fs
LIHC	TCGA-DD-A1EG-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236192849:236193050:236195700:236195952:236201403:236201553,	236195701	236195952	236195837	236195837	Frame_Shift_Del	C	-	p.G467fs
LIHC	TCGA-DD-A1EG-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205383	236205383	Frame_Shift_Del	C	-	p.G322fs
LIHC	TCGA-DD-A1EG-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236201403:236201553:236205209:236205592:236208756:236208983,	236205210	236205592	236205398	236205398	Frame_Shift_Del	T	-	p.K316fs
LIHC	TCGA-DD-A1EG-01	EDARADD	ENST00000334232.4,ENST00000439430.1,ENST00000359362.5	chr1	236577559:236577599:236590691:236590750:236631530:236631576,	236590692	236590750	236590742	236590742	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A1EG-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236724524:236724571:236727797:236727961:236729218:236729345,	236727798	236727961	236727897	236727897	Frame_Shift_Del	A	-	p.F1500fs
LIHC	TCGA-DD-A1EG-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236729945:236730176:236732295:236732424:236734650:236734772,	236732296	236732424	236732319	236732319	Frame_Shift_Del	T	-	p.M1352fs
LIHC	TCGA-DD-A1EG-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236729945:236730176:236732295:236732424:236734650:236734772,	236732296	236732424	236732392	236732392	Frame_Shift_Del	A	-	p.F1327fs
LIHC	TCGA-DD-A1EG-01	HEATR1	ENST00000366581.2	chr1	236736024:236736128:236737501:236737633:236739518:236739677,	236737502	236737633	236737595	236737595	Frame_Shift_Del	T	-	p.K1122fs
LIHC	TCGA-DD-A1EG-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236746035:236746172:236746312:236746496:236748324:236748516,	236746313	236746496	236746488	236746488	Frame_Shift_Del	G	-	p.P750fs
LIHC	TCGA-DD-A1EG-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236749119:236749241:236749540:236749752:236750701:236750790,	236749541	236749752	236749587	236749587	Frame_Shift_Del	T	-	p.K627fs
LIHC	TCGA-DD-A1EG-01	MTR	ENST00000366577.5,ENST00000418145.2,ENST00000535889.1,ENST00000463959.1	chr1	236976037:236976144:236978903:236978963:236979748:236979843,	236978904	236978963	236978929	236978929	Frame_Shift_Del	T	-	p.L212fs
LIHC	TCGA-DD-A1EG-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000463959.1	chr1	236992488:236992568:236995265:236995378:236998846:236998987,	236995266	236995378	236995339	236995339	Frame_Shift_Del	A	-	p.S383fs
LIHC	TCGA-DD-A1EG-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000542537.1	chr1	237756775:237756936:237758797:237758957:237765324:237765411,	237758798	237758957	237758846	237758846	Frame_Shift_Del	C	-	p.S1495fs
LIHC	TCGA-DD-A1EG-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000542537.1	chr1	237951287:237951435:237954728:237954815:237955404:237955623,	237954729	237954815	237954807	237954807	Frame_Shift_Del	T	-	p.F4519fs
LIHC	TCGA-DD-A1EG-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370556	240370556	Frame_Shift_Del	C	-	p.S815fs
LIHC	TCGA-DD-A1EG-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371731	240371731	Frame_Shift_Del	C	-	p.P1211fs
LIHC	TCGA-DD-A1EG-01	AKT3	ENST00000336199.5,ENST00000263826.5,ENST00000552631.1,ENST00000366539.1,ENST00000366540.1	chr1	243809206:243809339:243828073:243828185:243858892:243859018,	243828074	243828185	243828168	243828168	Frame_Shift_Del	T	-	p.T64fs
LIHC	TCGA-DD-A1EG-01	HNRNPU	ENST00000366525.3,ENST00000283179.9,ENST00000444376.2	chr1	245017683:245017805:245018274:245018346:245018725:245018910,	245018275	245018346	245018327	245018327	Frame_Shift_Del	T	-	p.N773fs
LIHC	TCGA-DD-A1EG-01	EFCAB2	ENST00000495271.1,ENST00000447569.2,ENST00000366523.1	chr1	245165454:245165534:245180543:245180628:245222687:245222760,245133724:245133745:245180543:245180628:245222687:245222760,	245180544	245180628	245180567	245180567	Frame_Shift_Del	A	-	p.K154fs
LIHC	TCGA-DD-A1EG-01	AHCTF1	ENST00000470300.1	chr1	247006003:247006078:247007096:247007230:247012916:247013151,247004263:247004300:247007096:247007230:247012916:247013151,	247007097	247007230	247007131	247007131	Frame_Shift_Del	T	-	p.N2199fs
LIHC	TCGA-DD-A1EG-01	AHCTF1	ENST00000483900.1,ENST00000366508.1,ENST00000326225.3,ENST00000391829.2	chr1	247027225:247027418:247030545:247030653:247030962:247031113,	247030546	247030653	247030553	247030553	Frame_Shift_Del	T	-	p.I1149fs
LIHC	TCGA-DD-A1EG-01	AHCTF1	ENST00000366508.1,ENST00000326225.3,ENST00000391829.2	chr1	247059136:247059227:247061509:247061638:247062752:247062782,	247061510	247061638	247061547	247061547	Frame_Shift_Del	G	-	p.P564fs
LIHC	TCGA-DD-A1EG-01	ZNF669	ENST00000366500.1	chr1	247264591:247264621:247265288:247265415:247267498:247267580,	247265289	247265415	247265401	247265401	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A1EG-01	ZNF669	ENST00000366501.1	chr1	247265032:247265093:247265292:247265415:247267498:247267580,	247265293	247265415	247265401	247265401	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A1EG-01	NLRP3	ENST00000391827.2,ENST00000336119.3,ENST00000391828.3	chr1	247597464:247597575:247599271:247599442:247607273:247607444,	247599272	247599442	247599403	247599403	Frame_Shift_Del	A	-	p.E877fs
LIHC	TCGA-DD-A1EG-01	SH3YL1	ENST00000497051.1,ENST00000471948.1,ENST00000431160.1,ENST00000403712.2,ENST00000463865.1,ENST00000488044.1,ENST00000405430.1,ENST00000488979.2,ENST00000451005.1,ENST00000356150.5,ENST00000468321.1	chr2	234159:234272:247537:247602:249730:249770,	247538	247602	247553	247553	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A1EG-01	TPO	ENST00000497517.2	chr2	1488491:1488626:1497573:1497811:1520654:1520751,1488491:1488626:1497573:1497811:1507719:1507847,	1497574	1497811	1497611	1497611	Frame_Shift_Del	C	-	p.R602fs
LIHC	TCGA-DD-A1EG-01	PXDN	ENST00000478155.1,ENST00000252804.4	chr2	1639179:1639293:1642617:1642750:1643073:1643194,	1642618	1642750	1642734	1642734	Frame_Shift_Del	C	-	p.E1364fs
LIHC	TCGA-DD-A1EG-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1653087	1653087	Frame_Shift_Del	C	-	p.G822fs
LIHC	TCGA-DD-A1EG-01	MYT1L	ENST00000428368.2	chr2	1915791:1915882:1920976:1921111:1926063:1927035,	1920977	1921111	1921068	1921068	Frame_Shift_Del	G	-	p.P509fs
LIHC	TCGA-DD-A1EG-01	TRAPPC12	ENST00000324266.5	chr2	3383490:3383647:3391390:3392441:3405547:3405664,	3391391	3392441	3392270	3392270	Frame_Shift_Del	C	-	p.D292fs
LIHC	TCGA-DD-A1EG-01	TRAPPC12	ENST00000324266.5	chr2	3383490:3383647:3391390:3392441:3405547:3405664,	3391391	3392441	3392274	3392274	Frame_Shift_Del	T	-	p.F294fs
LIHC	TCGA-DD-A1EG-01	COLEC11	ENST00000236693.7	chr2	3660900:3660972:3673603:3673682:3685122:3685194,	3673604	3673682	3673668	3673668	Frame_Shift_Del	A	-	p.E60fs
LIHC	TCGA-DD-A1EG-01	COLEC11	ENST00000438814.1,ENST00000403096.3,ENST00000416132.1,ENST00000418971.2,ENST00000349077.4	chr2	3651904:3652060:3685122:3685194:3687867:3687921,3653641:3653833:3685122:3685194:3687867:3687921,3660900:3660972:3685122:3685194:3687867:3687921,	3685123	3685194	3685169	3685169	Frame_Shift_Del	A	-	p.G57fs
LIHC	TCGA-DD-A1EG-01	KIDINS220	ENST00000427284.1,ENST00000473731.1	chr2	8876997:8877129:8888016:8888130:8890241:8890465,	8888017	8888130	8888038	8888038	Frame_Shift_Del	G	-	p.P1169fs
LIHC	TCGA-DD-A1EG-01	MBOAT2	ENST00000486484.1	chr2	9083315:9083393:9098625:9098771:9143668:9143787,	9098626	9098771	9098636	9098636	Frame_Shift_Del	A	-	p.C71fs
LIHC	TCGA-DD-A1EG-01	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9437428:9437574:9458652:9458727:9460416:9460466,	9458653	9458727	9458725	9458725	Frame_Shift_Del	G	-	p.G140fs
LIHC	TCGA-DD-A1EG-01	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9484660:9484764:9484859:9484929:9490936:9491024,	9484860	9484929	9484905	9484905	Frame_Shift_Del	T	-	p.G333fs
LIHC	TCGA-DD-A1EG-01	ASAP2	ENST00000491413.1,ENST00000315273.4	chr2	9528422:9528675:9533610:9533776:9540151:9540201,	9533611	9533776	9533620	9533620	Frame_Shift_Del	C	-	p.T843fs
LIHC	TCGA-DD-A1EG-01	ITGB1BP1	ENST00000463190.1	chr2	9552488:9552534:9554306:9554385:9558754:9558861,9552488:9552534:9554306:9554385:9563501:9563559,	9554307	9554385	9554363	9554363	Frame_Shift_Del	C	-	p.G32fs
LIHC	TCGA-DD-A1EG-01	CPSF3	ENST00000238112.3,ENST00000460593.1	chr2	9573999:9574089:9576339:9576490:9580619:9580795,	9576340	9576490	9576464	9576464	Frame_Shift_Del	G	-	p.R208fs
LIHC	TCGA-DD-A1EG-01	TAF1B	ENST00000263663.5	chr2	10008404:10008558:10015993:10016147:10022834:10022934,	10015994	10016147	10016108	10016108	Frame_Shift_Del	T	-	p.L223fs
LIHC	TCGA-DD-A1EG-01	GRHL1	ENST00000324883.5,ENST00000464418.1,ENST00000324907.9,ENST00000405379.2,ENST00000472167.1	chr2	10105415:10105510:10126251:10126410:10130823:10130875,	10126252	10126410	10126343	10126343	Frame_Shift_Del	G	-	p.S401fs
LIHC	TCGA-DD-A1EG-01	GRHL1	ENST00000324883.5,ENST00000464418.1,ENST00000324907.9,ENST00000405379.2	chr2	10130823:10130901:10132134:10132274:10133334:10133372,10130823:10130875:10132134:10132274:10133334:10133372,	10132135	10132274	10132189	10132189	Frame_Shift_Del	T	-	p.V459fs
LIHC	TCGA-DD-A1EG-01	PDIA6	ENST00000381611.4,ENST00000272227.3,ENST00000404371.2,ENST00000540494.1,ENST00000404824.2	chr2	10925059:10925156:10927406:10927565:10928822:10928895,	10927407	10927565	10927433	10927433	Frame_Shift_Del	A	-	p.S429fs
LIHC	TCGA-DD-A1EG-01	GREB1	ENST00000381483.2,ENST00000263834.5,ENST00000381486.2,ENST00000234142.5	chr2	11696743:11696897:11702588:11702708:11706605:11706782,	11702589	11702708	11702653	11702653	Frame_Shift_Del	C	-	p.G74fs
LIHC	TCGA-DD-A1EG-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11777841:11778042:11778796:11778935:11780416:11782489,	11778797	11778935	11778925	11778925	Frame_Shift_Del	T	-	p.H1892fs
LIHC	TCGA-DD-A1EG-01	LPIN1	ENST00000256720.2,ENST00000396097.1,ENST00000425416.2,ENST00000449576.2,ENST00000396099.1	chr2	11928512:11928582:11932039:11932132:11935533:11935613,	11932040	11932132	11932076	11932076	Frame_Shift_Del	A	-	p.K549fs
LIHC	TCGA-DD-A1EG-01	LPIN1	ENST00000256720.2,ENST00000396097.1,ENST00000425416.2,ENST00000449576.2,ENST00000396099.1,ENST00000404113.2	chr2	11955213:11955366:11959609:11959724:11960536:11960640,	11959610	11959724	11959695	11959695	Frame_Shift_Del	T	-	p.F794fs
LIHC	TCGA-DD-A1EG-01	NBAS	ENST00000417461.1,ENST00000423602.1,ENST00000281513.5,ENST00000442506.1,ENST00000441750.1	chr2	15307040:15307447:15326865:15327004:15330387:15330521,15319111:15319240:15326865:15327004:15330387:15330521,	15326866	15327004	15326910	15326910	Frame_Shift_Del	T	-	p.M2223fs
LIHC	TCGA-DD-A1EG-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15618368:15618413:15629017:15629146:15644268:15644337,	15629018	15629146	15629025	15629025	Frame_Shift_Del	T	-	p.N359fs
LIHC	TCGA-DD-A1EG-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15618368:15618413:15629017:15629146:15644268:15644337,	15629018	15629146	15629135	15629135	Frame_Shift_Del	A	-	p.F322fs
LIHC	TCGA-DD-A1EG-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15676541:15676675:15679346:15679480:15691616:15691660,	15679347	15679480	15679383	15679383	Frame_Shift_Del	A	-	p.F159fs
LIHC	TCGA-DD-A1EG-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15676541:15676675:15679346:15679480:15691616:15691660,	15679347	15679480	15679424	15679424	Frame_Shift_Del	G	-	p.L147fs
LIHC	TCGA-DD-A1EG-01	FAM49A	ENST00000406434.1,ENST00000355549.2,ENST00000381323.3	chr2	16742723:16742801:16743272:16743409:16745256:16745362,	16743273	16743409	16743405	16743405	Frame_Shift_Del	T	-	p.K101fs
LIHC	TCGA-DD-A1EG-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17898354:17898443:17899343:17899490:17902206:17902305,	17899344	17899490	17899443	17899443	Frame_Shift_Del	T	-	p.K331fs
LIHC	TCGA-DD-A1EG-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17906523:17906625:17907655:17907736:17912344:17912406,	17907656	17907736	17907675	17907675	Frame_Shift_Del	T	-	p.N202fs
LIHC	TCGA-DD-A1EG-01	SMC6	ENST00000351948.4	chr2	17922945:17922996:17927093:17927218:17934892:17935040,	17927094	17927218	17927130	17927130	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-DD-A1EG-01	WDR35	ENST00000281405.4,ENST00000345530.3,ENST00000414212.1	chr2	20113318:20113469:20113797:20114038:20130156:20130313,	20113798	20114038	20113824	20113824	Frame_Shift_Del	T	-	p.K1123fs
LIHC	TCGA-DD-A1EG-01	WDR35	ENST00000281405.4,ENST00000345530.3	chr2	20132143:20132208:20133161:20133272:20135231:20135364,	20133162	20133272	20133214	20133214	Frame_Shift_Del	A	-	p.L880fs
LIHC	TCGA-DD-A1EG-01	LAPTM4A	ENST00000175091.4	chr2	20234727:20234823:20237076:20237199:20237298:20237375,	20237077	20237199	20237108	20237108	Frame_Shift_Del	A	-	p.L134fs
LIHC	TCGA-DD-A1EG-01	LAPTM4A	ENST00000175091.4	chr2	20234727:20234823:20237076:20237199:20237298:20237375,	20237077	20237199	20237155	20237155	Frame_Shift_Del	A	-	p.F118fs
LIHC	TCGA-DD-A1EG-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511377	20511377	Frame_Shift_Del	T	-	p.K132fs
LIHC	TCGA-DD-A1EG-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000442400.1,ENST00000319801.5,ENST00000420234.1	chr2	20512059:20512184:20518297:20518406:20527070:20527139,	20518298	20518406	20518362	20518362	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-DD-A1EG-01	ATAD2B	ENST00000238789.5	chr2	24056788:24056948:24080284:24080373:24086250:24086425,	24080285	24080373	24080341	24080341	Frame_Shift_Del	A	-	p.F504fs
LIHC	TCGA-DD-A1EG-01	UBXN2A	ENST00000309033.4,ENST00000446425.2,ENST00000404924.1	chr2	24205765:24205903:24207542:24207701:24222541:24222807,	24207543	24207701	24207552	24207552	Frame_Shift_Del	A	-	p.P145fs
LIHC	TCGA-DD-A1EG-01	TP53I3	ENST00000238721.4,ENST00000335934.4	chr2	24300503:24300631:24303688:24303901:24305754:24306022,24302371:24302510:24303688:24303901:24305754:24306022,	24303689	24303901	24303760	24303760	Frame_Shift_Del	T	-	p.K183fs
LIHC	TCGA-DD-A1EG-01	FAM228B	ENST00000407625.1,ENST00000420135.2	chr2	24357988:24358057:24360778:24360970:24362239:24362320,	24360779	24360970	24360917	24360917	Frame_Shift_Del	A	-	p.K104fs
LIHC	TCGA-DD-A1EG-01	FAM228B	ENST00000407625.1,ENST00000420135.2	chr2	24357988:24358057:24360778:24360970:24362239:24362320,	24360779	24360970	24360947	24360947	Frame_Shift_Del	T	-	p.F113fs
LIHC	TCGA-DD-A1EG-01	ITSN2	ENST00000361999.3	chr2	24494673:24494810:24498581:24498718:24509080:24509220,	24498582	24498718	24498606	24498606	Frame_Shift_Del	T	-	p.K687fs
LIHC	TCGA-DD-A1EG-01	ITSN2	ENST00000361999.3	chr2	24494673:24494810:24498581:24498718:24509080:24509220,	24498582	24498718	24498670	24498670	Frame_Shift_Del	A	-	p.Y665fs
LIHC	TCGA-DD-A1EG-01	ITSN2	ENST00000361999.3	chr2	24498581:24498718:24509080:24509220:24516556:24516644,	24509081	24509220	24509192	24509192	Frame_Shift_Del	T	-	p.K584fs
LIHC	TCGA-DD-A1EG-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4	chr2	24526667:24526731:24531485:24531625:24533152:24533249,	24531486	24531625	24531497	24531497	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-DD-A1EG-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24951176:24951345:24952369:24952684:24962300:24962402,	24952370	24952684	24952576	24952576	Frame_Shift_Del	T	-	p.A1031fs
LIHC	TCGA-DD-A1EG-01	ADCY3	ENST00000606682.1,ENST00000260600.5,ENST00000405392.1	chr2	25053577:25053694:25054530:25054618:25057353:25057515,	25054531	25054618	25054595	25054595	Frame_Shift_Del	A	-	p.F664fs
LIHC	TCGA-DD-A1EG-01	EFR3B	ENST00000401432.3,ENST00000403714.3,ENST00000402191.1	chr2	25326505:25326656:25344541:25344663:25351051:25351201,	25344542	25344663	25344621	25344621	Frame_Shift_Del	A	-	p.E148fs
LIHC	TCGA-DD-A1EG-01	DTNB	ENST00000405222.1,ENST00000407038.3,ENST00000485845.1,ENST00000288642.8,ENST00000406818.3,ENST00000407661.3,ENST00000496972.2,ENST00000407186.1,ENST00000404103.3	chr2	25803589:25803695:25818954:25819109:25851039:25851253,25803589:25803695:25818954:25819109:25830104:25830162,	25818955	25819109	25818997	25818997	Frame_Shift_Del	A	-	p.F187fs
LIHC	TCGA-DD-A1EG-01	AGBL5	ENST00000487078.1,ENST00000323064.8,ENST00000360131.4	chr2	27279490:27279660:27280170:27280306:27281267:27281470,	27280171	27280306	27280252	27280252	Frame_Shift_Del	C	-	p.S539fs
LIHC	TCGA-DD-A1EG-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305819	27305819	Frame_Shift_Del	G	-	p.L460fs
LIHC	TCGA-DD-A1EG-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306468	27306468	Frame_Shift_Del	G	-	p.D677fs
LIHC	TCGA-DD-A1EG-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306663	27306663	Frame_Shift_Del	G	-	p.G743fs
LIHC	TCGA-DD-A1EG-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306780	27306780	Frame_Shift_Del	G	-	p.G782fs
LIHC	TCGA-DD-A1EG-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000430533.1,ENST00000468045.1	chr2	27354877:27354950:27355097:27355271:27355470:27355488,	27355098	27355271	27355191	27355191	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-DD-A1EG-01	ATRAID	ENST00000380171.3,ENST00000405489.3,ENST00000606999.1	chr2	27438341:27438413:27438499:27438621:27439390:27439488,	27438500	27438621	27438598	27438598	Frame_Shift_Del	T	-	p.L210fs
LIHC	TCGA-DD-A1EG-01	CAD	ENST00000264705.4,ENST00000403525.1	chr2	27444085:27444215:27445061:27445204:27445386:27445528,	27445062	27445204	27445177	27445177	Frame_Shift_Del	C	-	p.R156fs
LIHC	TCGA-DD-A1EG-01	SLC30A3	ENST00000233535.4,ENST00000497341.1,ENST00000445870.1,ENST00000447008.2	chr2	27478253:27478328:27479253:27479388:27479655:27479761,	27479254	27479388	27479296	27479296	Frame_Shift_Del	G	-	p.L326fs
LIHC	TCGA-DD-A1EG-01	SLC30A3	ENST00000233535.4,ENST00000445870.1	chr2	27481028:27481175:27481620:27481802:27485679:27485739,	27481621	27481802	27481720	27481720	Frame_Shift_Del	G	-	p.L60fs
LIHC	TCGA-DD-A1EG-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27556840:27556866:27558464:27558573:27558783:27558895,	27558465	27558573	27558489	27558489	Frame_Shift_Del	C	-	p.A518fs
LIHC	TCGA-DD-A1EG-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27556840:27556866:27558464:27558573:27558783:27558895,	27558465	27558573	27558523	27558523	Frame_Shift_Del	C	-	p.G506fs
LIHC	TCGA-DD-A1EG-01	EIF2B4	ENST00000347454.4,ENST00000451130.2,ENST00000405940.2,ENST00000445933.2,ENST00000493344.2	chr2	27587265:27587466:27587584:27587765:27589625:27589803,	27587585	27587765	27587669	27587669	Frame_Shift_Del	G	-	p.H451fs
LIHC	TCGA-DD-A1EG-01	NRBP1	ENST00000379863.3	chr2	27657999:27658094:27658589:27658613:27659619:27659703,	27658590	27658613	27658602	27658602	Frame_Shift_Del	T	-	p.I225fs
LIHC	TCGA-DD-A1EG-01	NRBP1	ENST00000379863.3	chr2	27657999:27658094:27658589:27658613:27659619:27659703,	27658590	27658613	27658610	27658610	Frame_Shift_Del	A	-	p.N228fs
LIHC	TCGA-DD-A1EG-01	IFT172	ENST00000260570.3	chr2	27680505:27680622:27680707:27680843:27680992:27681090,	27680708	27680843	27680793	27680793	Frame_Shift_Del	T	-	p.K1009fs
LIHC	TCGA-DD-A1EG-01	GCKR	ENST00000472290.1,ENST00000453813.1,ENST00000264717.2	chr2	27721590:27721664:27722008:27722075:27722263:27722317,	27722009	27722075	27722047	27722047	Frame_Shift_Del	C	-	p.A156fs
LIHC	TCGA-DD-A1EG-01	ZNF512	ENST00000379717.1,ENST00000416005.2,ENST00000355467.4,ENST00000413371.2	chr2	27823557:27823682:27824222:27824309:27825329:27825428,	27824223	27824309	27824294	27824294	Frame_Shift_Del	A	-	p.A218fs
LIHC	TCGA-DD-A1EG-01	GPN1	ENST00000424214.1,ENST00000264718.3,ENST00000503738.1,ENST00000458167.2,ENST00000461249.1,ENST00000610189.1,ENST00000515877.1,ENST00000407583.3	chr2	27862909:27862992:27864106:27864146:27865295:27865386,	27864107	27864146	27864135	27864135	Frame_Shift_Del	A	-	p.K292fs
LIHC	TCGA-DD-A1EG-01	SLC4A1AP	ENST00000326019.6	chr2	27900604:27900791:27905114:27905226:27907903:27908144,	27905115	27905226	27905208	27905208	Frame_Shift_Del	A	-	p.L619fs
LIHC	TCGA-DD-A1EG-01	PPP1CB	ENST00000441461.1,ENST00000358506.2	chr2	28974541:28974649:28974903:28975042:28999716:28999848,28974613:28974686:28974903:28975042:28999716:28999848,	28974904	28975042	28975028	28975028	Frame_Shift_Del	C	-	p.T13fs
LIHC	TCGA-DD-A1EG-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379233	29379233	Frame_Shift_Del	A	-	p.S393fs
LIHC	TCGA-DD-A1EG-01	ALK	ENST00000389048.3	chr2	29436849:29436947:29443571:29443701:29445209:29445274,	29443572	29443701	29443698	29443698	Frame_Shift_Del	T	-	p.K1173fs
LIHC	TCGA-DD-A1EG-01	LBH	ENST00000406087.1	chr2	30454402:30454630:30457270:30457377:30480298:30480414,	30457271	30457377	30457346	30457346	Frame_Shift_Del	C	-	p.S34fs
LIHC	TCGA-DD-A1EG-01	CAPN13	ENST00000534090.2,ENST00000458085.2,ENST00000295055.8	chr2	30973968:30974117:30975918:30976064:30977155:30977230,	30975919	30976064	30975961	30975961	Frame_Shift_Del	G	-	p.Q349fs
LIHC	TCGA-DD-A1EG-01	GALNT14	ENST00000424136.1	chr2	31189142:31189168:31215703:31215873:31360823:31360887,31189142:31189168:31215703:31215873:31337608:31337693,31189142:31189168:31215703:31215873:31355495:31355578,	31215704	31215873	31215729	31215729	Frame_Shift_Del	C	-	p.A92fs
LIHC	TCGA-DD-A1EG-01	CAPN14	ENST00000444918.2,ENST00000403897.3,ENST00000398824.2	chr2	31399891:31400008:31400611:31400687:31401376:31401445,	31400612	31400687	31400684	31400684	Frame_Shift_Del	C	-	p.V595fs
LIHC	TCGA-DD-A1EG-01	XDH	ENST00000379416.3	chr2	31604498:31604592:31605866:31606018:31606620:31606713,	31605867	31606018	31605974	31605974	Frame_Shift_Del	T	-	p.T311fs
LIHC	TCGA-DD-A1EG-01	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32366972:32367015:32368404:32368484:32370005:32370076,	32368405	32368484	32368407	32368407	Frame_Shift_Del	A	-	p.T513fs
LIHC	TCGA-DD-A1EG-01	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32366972:32367015:32368404:32368484:32370005:32370076,	32368405	32368484	32368460	32368460	Frame_Shift_Del	A	-	p.Q531fs
LIHC	TCGA-DD-A1EG-01	SLC30A6	ENST00000282587.5,ENST00000357055.3,ENST00000454324.1,ENST00000435660.1,ENST00000379343.2,ENST00000457724.1	chr2	32390950:32390972:32396355:32396442:32399131:32399216,	32396356	32396442	32396392	32396392	Frame_Shift_Del	T	-	p.F15fs
LIHC	TCGA-DD-A1EG-01	SLC30A6	ENST00000282587.5,ENST00000440718.1,ENST00000357055.3,ENST00000454324.1,ENST00000406369.1,ENST00000435660.1,ENST00000379343.2,ENST00000538303.1	chr2	32409341:32409407:32417404:32417485:32417986:32418020,	32417405	32417485	32417410	32417410	Frame_Shift_Del	A	-	p.E97fs
LIHC	TCGA-DD-A1EG-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475077	32475077	Frame_Shift_Del	C	-	p.G619fs
LIHC	TCGA-DD-A1EG-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475855	32475855	Frame_Shift_Del	T	-	p.T361fs
LIHC	TCGA-DD-A1EG-01	YIPF4	ENST00000238831.4	chr2	32515558:32515705:32517245:32517417:32523302:32523380,	32517246	32517417	32517380	32517380	Frame_Shift_Del	T	-	p.L123fs
LIHC	TCGA-DD-A1EG-01	BIRC6	ENST00000421745.2	chr2	32701280:32701412:32702435:32702651:32703702:32703886,	32702436	32702651	32702513	32702513	Frame_Shift_Del	A	-	p.A2310fs
LIHC	TCGA-DD-A1EG-01	BIRC6	ENST00000421745.2	chr2	32710709:32710826:32712713:32712868:32713654:32713781,	32712714	32712868	32712837	32712837	Frame_Shift_Del	T	-	p.L2646fs
LIHC	TCGA-DD-A1EG-01	BIRC6	ENST00000421745.2	chr2	32737999:32738221:32740056:32740837:32743320:32743464,	32740057	32740837	32740156	32740156	Frame_Shift_Del	T	-	p.Y3556fs
LIHC	TCGA-DD-A1EG-01	BIRC6	ENST00000421745.2	chr2	32743883:32744013:32749954:32750086:32750530:32750695,	32749955	32750086	32750045	32750045	Frame_Shift_Del	A	-	p.E3905fs
LIHC	TCGA-DD-A1EG-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32756421:32756618:32768307:32768608:32770709:32770927,	32768308	32768608	32768392	32768392	Frame_Shift_Del	G	-	p.G4126fs
LIHC	TCGA-DD-A1EG-01	TTC27	ENST00000317907.4	chr2	32961851:32961883:32983358:32983586:33002948:33003047,	32983359	32983586	32983389	32983389	Frame_Shift_Del	A	-	p.K496fs
LIHC	TCGA-DD-A1EG-01	TTC27	ENST00000317907.4	chr2	33037570:33037682:33042523:33042624:33045882:33046118,	33042524	33042624	33042602	33042602	Frame_Shift_Del	G	-	p.R796fs
LIHC	TCGA-DD-A1EG-01	LTBP1	ENST00000404525.1,ENST00000402934.1	chr2	33468728:33468851:33477743:33477911:33482350:33482578,33468728:33468851:33477743:33477911:33482509:33482578,	33477744	33477911	33477749	33477749	Frame_Shift_Del	C	-	p.P670fs
LIHC	TCGA-DD-A1EG-01	CRIM1	ENST00000280527.2	chr2	36739419:36739537:36740698:36740908:36744469:36744685,	36740699	36740908	36740767	36740767	Frame_Shift_Del	A	-	p.K617fs
LIHC	TCGA-DD-A1EG-01	VIT	ENST00000379241.3,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1,ENST00000404084.1	chr2	37032580:37032807:37035614:37036128:37041325:37041576,	37035615	37036128	37035843	37035843	Frame_Shift_Del	T	-	p.F540fs
LIHC	TCGA-DD-A1EG-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37297372:37297530:37299252:37299424:37302627:37302777,	37299253	37299424	37299369	37299369	Frame_Shift_Del	T	-	p.N218fs
LIHC	TCGA-DD-A1EG-01	GPATCH11	ENST00000409774.1,ENST00000608836.1	chr2	37316782:37317009:37317823:37317865:37319058:37319179,	37317824	37317865	37317859	37317859	Frame_Shift_Del	A	-	p.K104fs
LIHC	TCGA-DD-A1EG-01	EIF2AK2	ENST00000405334.1,ENST00000233057.4,ENST00000395127.2,ENST00000462861.1	chr2	37334488:37334538:37334616:37334670:37336336:37336438,	37334617	37334670	37334620	37334620	Frame_Shift_Del	T	-	p.K510fs
LIHC	TCGA-DD-A1EG-01	EIF2AK2	ENST00000233057.4,ENST00000395127.2	chr2	37347101:37347282:37349648:37349807:37353431:37353534,	37349649	37349807	37349658	37349658	Frame_Shift_Del	T	-	p.N353fs
LIHC	TCGA-DD-A1EG-01	EIF2AK2	ENST00000233057.4,ENST00000395127.2	chr2	37349648:37349807:37353431:37353554:37362626:37362689,	37353432	37353554	37353539	37353539	Frame_Shift_Del	A	-	p.F267fs
LIHC	TCGA-DD-A1EG-01	EIF2AK2	ENST00000405334.1,ENST00000233057.4,ENST00000395127.2,ENST00000496059.1	chr2	37365412:37365506:37365651:37365728:37366773:37366900,	37365652	37365728	37365699	37365699	Frame_Shift_Del	A	-	p.F182fs
LIHC	TCGA-DD-A1EG-01	CEBPZ	ENST00000234170.5	chr2	37443458:37443561:37444126:37444180:37447527:37447616,	37444127	37444180	37444166	37444166	Frame_Shift_Del	A	-	p.F723fs
LIHC	TCGA-DD-A1EG-01	PRKD3	ENST00000379066.1,ENST00000469275.1,ENST00000234179.2	chr2	37486725:37486824:37487365:37487527:37494572:37494679,	37487366	37487527	37487407	37487407	Frame_Shift_Del	T	-	p.S669fs
LIHC	TCGA-DD-A1EG-01	PRKD3	ENST00000379066.1,ENST00000469275.1,ENST00000234179.2	chr2	37487498:37487527:37494572:37494679:37496757:37496830,	37494573	37494679	37494618	37494618	Frame_Shift_Del	G	-	p.P613fs
LIHC	TCGA-DD-A1EG-01	PRKD3	ENST00000379066.1,ENST00000443187.1,ENST00000494667.1,ENST00000234179.2,ENST00000475912.1	chr2	37513374:37513512:37516498:37516656:37518010:37518105,	37516499	37516656	37516513	37516513	Frame_Shift_Del	G	-	p.L235fs
LIHC	TCGA-DD-A1EG-01	PRKD3	ENST00000379066.1,ENST00000494667.1,ENST00000234179.2	chr2	37518010:37518142:37520275:37520414:37543379:37543531,	37520276	37520414	37520378	37520378	Frame_Shift_Del	T	-	p.I109fs
LIHC	TCGA-DD-A1EG-01	RMDN2	ENST00000407257.1,ENST00000234195.3	chr2	38177653:38177738:38178375:38179344:38201182:38201357,	38178376	38179344	38179318	38179318	Frame_Shift_Del	T	-	p.S321fs
LIHC	TCGA-DD-A1EG-01	ATL2	ENST00000539122.1,ENST00000378954.4,ENST00000402054.1,ENST00000405384.2,ENST00000452935.2	chr2	38523049:38523255:38525285:38525717:38526397:38526469,	38525286	38525717	38525342	38525342	Frame_Shift_Del	C	-	p.E526fs
LIHC	TCGA-DD-A1EG-01	HNRNPLL	ENST00000378915.3	chr2	38809054:38809127:38810987:38811068:38812785:38812889,	38810988	38811068	38810994	38810994	Frame_Shift_Del	T	-	p.Q207fs
LIHC	TCGA-DD-A1EG-01	GALM	ENST00000444351.1	chr2	38908436:38908628:38916954:38917036:38956697:38956839,38908436:38908628:38916954:38917036:38925507:38925578,	38916955	38917036	38916959	38916959	Frame_Shift_Del	C	-	p.S186fs
LIHC	TCGA-DD-A1EG-01	DHX57	ENST00000452978.1	chr2	39025493:39025584:39029856:39030057:39033700:39033835,39025493:39025584:39029856:39030057:39040962:39041037,	39029857	39030057	39030009	39030009	Frame_Shift_Del	T	-	p.T1289fs
LIHC	TCGA-DD-A1EG-01	DHX57	ENST00000460193.1,ENST00000295373.6,ENST00000457308.1	chr2	39029856:39030057:39033700:39033835:39040962:39041037,	39033701	39033835	39033812	39033812	Frame_Shift_Del	A	-	p.F1235fs
LIHC	TCGA-DD-A1EG-01	DHX57	ENST00000460193.1,ENST00000295373.6,ENST00000457308.1,ENST00000452978.1	chr2	39055481:39055578:39064972:39065089:39070146:39070352,	39064973	39065089	39065087	39065087	Frame_Shift_Del	C	-	p.V810fs
LIHC	TCGA-DD-A1EG-01	DHX57	ENST00000460193.1,ENST00000295373.6,ENST00000457308.1	chr2	39074160:39074215:39075410:39075544:39081195:39081320,	39075411	39075544	39075450	39075450	Frame_Shift_Del	A	-	p.S709fs
LIHC	TCGA-DD-A1EG-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39241007:39241130:39241905:39241987:39249710:39250366,	39241906	39241987	39241943	39241943	Frame_Shift_Del	A	-	p.C635fs
LIHC	TCGA-DD-A1EG-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39250286:39250366:39251150:39251278:39262352:39262451,	39251151	39251278	39251185	39251185	Frame_Shift_Del	T	-	p.I390fs
LIHC	TCGA-DD-A1EG-01	SOS1	ENST00000428721.2,ENST00000395038.2,ENST00000451331.1,ENST00000426016.1,ENST00000402219.2	chr2	39283873:39284007:39285813:39285945:39294768:39294894,	39285814	39285945	39285831	39285831	Frame_Shift_Del	T	-	p.I110fs
LIHC	TCGA-DD-A1EG-01	MAP4K3	ENST00000341681.5,ENST00000536018.1,ENST00000437545.1,ENST00000263881.3	chr2	39477233:39477846:39478970:39479026:39481590:39481661,	39478971	39479026	39479011	39479011	Frame_Shift_Del	A	-	p.S853fs
LIHC	TCGA-DD-A1EG-01	MAP4K3	ENST00000341681.5,ENST00000536018.1,ENST00000437545.1,ENST00000263881.3	chr2	39505547:39505627:39507412:39507497:39509653:39509692,	39507413	39507497	39507471	39507471	Frame_Shift_Del	A	-	p.F552fs
LIHC	TCGA-DD-A1EG-01	MAP4K3	ENST00000341681.5,ENST00000536018.1,ENST00000437545.1,ENST00000263881.3	chr2	39513992:39514105:39515261:39515421:39517432:39517475,	39515262	39515421	39515372	39515372	Frame_Shift_Del	T	-	p.N455fs
LIHC	TCGA-DD-A1EG-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000510781.2,ENST00000403537.3,ENST00000505747.1,ENST00000454352.2	chr2	39997156:39997259:39998644:39998780:40006253:40006380,	39998645	39998780	39998692	39998692	Frame_Shift_Del	A	-	p.L73fs
LIHC	TCGA-DD-A1EG-01	THUMPD2	ENST00000530522.1	chr2	39997156:39997259:39998654:39998780:40006253:40006380,	39998655	39998780	39998692	39998692	Frame_Shift_Del	A	-	p.L73fs
LIHC	TCGA-DD-A1EG-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000510781.2,ENST00000403537.3,ENST00000505747.1,ENST00000454352.2	chr2	39997156:39997259:39998644:39998780:40006253:40006380,	39998645	39998780	39998752	39998752	Frame_Shift_Del	A	-	p.F52fs
LIHC	TCGA-DD-A1EG-01	THUMPD2	ENST00000530522.1	chr2	39997156:39997259:39998654:39998780:40006253:40006380,	39998655	39998780	39998752	39998752	Frame_Shift_Del	A	-	p.F52fs
LIHC	TCGA-DD-A1EG-01	SLC8A1	ENST00000405269.1,ENST00000402441.1,ENST00000408028.2,ENST00000406785.2,ENST00000406391.2	chr2	40401964:40401982:40404891:40404995:40405526:40405629,40401964:40401982:40404891:40404995:40655612:40657411,	40404892	40404995	40404914	40404914	Frame_Shift_Del	T	-	p.K630fs
LIHC	TCGA-DD-A1EG-01	EML4	ENST00000402711.2,ENST00000409040.1,ENST00000401738.3	chr2	42396600:42396776:42472644:42472827:42483640:42483770,	42472645	42472827	42472806	42472806	Frame_Shift_Del	A	-	p.K64fs
LIHC	TCGA-DD-A1EG-01	EML4	ENST00000401738.3	chr2	42491845:42491871:42492058:42492091:42507989:42508113,	42492059	42492091	42492077	42492077	Frame_Shift_Del	A	-	p.E229fs
LIHC	TCGA-DD-A1EG-01	EML4	ENST00000402711.2,ENST00000406175.3,ENST00000401738.3,ENST00000318522.5	chr2	42522520:42522656:42528380:42528532:42530243:42530369,	42528381	42528532	42528484	42528484	Frame_Shift_Del	A	-	p.R531fs
LIHC	TCGA-DD-A1EG-01	EML4	ENST00000453191.2	chr2	42530454:42530586:42531623:42531691:42543101:42543190,42530454:42530586:42531623:42531691:42552606:42552694,	42531624	42531691	42531644	42531644	Frame_Shift_Del	T	-	p.D640fs
LIHC	TCGA-DD-A1EG-01	MTA3	ENST00000405592.1,ENST00000407270.3,ENST00000406911.1,ENST00000406652.1,ENST00000405094.1,ENST00000454356.1,ENST00000409019.1	chr2	42797576:42797644:42836597:42836724:42867312:42867376,42806246:42806340:42836597:42836724:42867312:42867376,	42836598	42836724	42836619	42836619	Frame_Shift_Del	A	-	p.E15fs
LIHC	TCGA-DD-A1EG-01	MTA3	ENST00000405592.1,ENST00000407270.3,ENST00000406911.1,ENST00000406652.1,ENST00000405094.1,ENST00000454356.1,ENST00000409019.1	chr2	42797576:42797644:42836597:42836724:42867312:42867376,42806246:42806340:42836597:42836724:42867312:42867376,	42836598	42836724	42836673	42836673	Frame_Shift_Del	G	-	p.R33fs
LIHC	TCGA-DD-A1EG-01	THADA	ENST00000407351.1,ENST00000398653.1,ENST00000405006.4,ENST00000405975.2,ENST00000415080.2	chr2	43458345:43458482:43459851:43460021:43506903:43507035,	43459852	43460021	43460017	43460017	Frame_Shift_Del	A	-	p.F1767fs
LIHC	TCGA-DD-A1EG-01	THADA	ENST00000402796.1,ENST00000330266.7,ENST00000407351.1,ENST00000398653.1,ENST00000405006.4,ENST00000405975.2,ENST00000408045.3,ENST00000415080.2	chr2	43735786:43735919:43755017:43755127:43768297:43768442,	43755018	43755127	43755065	43755065	Frame_Shift_Del	A	-	p.F1109fs
LIHC	TCGA-DD-A1EG-01	THADA	ENST00000402796.1,ENST00000330266.7,ENST00000407351.1,ENST00000398653.1,ENST00000405006.4,ENST00000405975.2,ENST00000408045.3,ENST00000415080.2	chr2	43768297:43768455:43776348:43776507:43778927:43779061,	43776349	43776507	43776443	43776443	Frame_Shift_Del	A	-	p.F1004fs
LIHC	TCGA-DD-A1EG-01	THADA	ENST00000403856.1,ENST00000404790.1,ENST00000402360.2,ENST00000405006.4,ENST00000405975.2,ENST00000415080.2	chr2	43801474:43802166:43804160:43804381:43805651:43805746,	43804161	43804381	43804259	43804259	Frame_Shift_Del	C	-	p.G313fs
LIHC	TCGA-DD-A1EG-01	THADA	ENST00000398653.1,ENST00000408045.3	chr2	43801474:43802166:43804160:43804373:43805651:43805746,	43804161	43804373	43804259	43804259	Frame_Shift_Del	C	-	p.G313fs
LIHC	TCGA-DD-A1EG-01	PLEKHH2	ENST00000490038.1	chr2	43980757:43980899:43986038:43986168:43989442:43989529,	43986039	43986168	43986157	43986157	Frame_Shift_Del	T	-	p.F1354fs
LIHC	TCGA-DD-A1EG-01	DYNC2LI1	ENST00000378587.3,ENST00000489222.2,ENST00000260605.8,ENST00000443170.3,ENST00000605786.1	chr2	44023028:44023097:44023856:44023934:44027979:44028056,	44023857	44023934	44023902	44023902	Frame_Shift_Del	T	-	p.F208fs
LIHC	TCGA-DD-A1EG-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44040367:44040448:44041615:44041728:44047053:44047239,	44041616	44041728	44041683	44041683	Frame_Shift_Del	A	-	p.F170fs
LIHC	TCGA-DD-A1EG-01	ABCG8	ENST00000272286.2	chr2	44071645:44071747:44073293:44073450:44078722:44078961,	44073294	44073450	44073296	44073296	Frame_Shift_Del	G	-	p.V56fs
LIHC	TCGA-DD-A1EG-01	LRPPRC	ENST00000409659.1,ENST00000409946.1	chr2	44206964:44207087:44209376:44209573:44222937:44223117,	44209377	44209573	44209402	44209402	Frame_Shift_Del	T	-	p.K107fs
LIHC	TCGA-DD-A1EG-01	SRBD1	ENST00000535761.1,ENST00000490133.1,ENST00000263736.4	chr2	45616231:45616738:45620083:45620268:45640252:45640432,	45620084	45620268	45620171	45620171	Frame_Shift_Del	T	-	p.I871fs
LIHC	TCGA-DD-A1EG-01	SRBD1	ENST00000263736.4	chr2	45808831:45808949:45812746:45812913:45826587:45826974,	45812747	45812913	45812803	45812803	Frame_Shift_Del	A	-	p.I253fs
LIHC	TCGA-DD-A1EG-01	RHOQ	ENST00000482449.2,ENST00000238738.4	chr2	46770905:46770951:46803225:46803390:46803699:46803795,	46803226	46803390	46803314	46803314	Frame_Shift_Del	A	-	p.Q97fs
LIHC	TCGA-DD-A1EG-01	RHOQ	ENST00000489471.1,ENST00000473428.1,ENST00000238738.4	chr2	46803266:46803390:46803699:46803795:46808066:46808185,	46803700	46803795	46803752	46803752	Frame_Shift_Del	A	-	p.E140fs
LIHC	TCGA-DD-A1EG-01	TTC7A	ENST00000484061.1	chr2	47238469:47238574:47251425:47251498:47256362:47256523,	47251426	47251498	47251450	47251450	Frame_Shift_Del	C	-	p.D531fs
LIHC	TCGA-DD-A1EG-01	MSH6	ENST00000445503.1	chr2	48010308:48010632:48018065:48018262:48023032:48023175,48010308:48010632:48018065:48018262:48025749:48025766,	48018066	48018262	48018202	48018202	Frame_Shift_Del	T	-	p.F134fs
LIHC	TCGA-DD-A1EG-01	PPP1R21	ENST00000431614.1,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8,ENST00000455978.1	chr2	48713769:48713897:48718156:48718309:48725631:48725640,48713769:48713897:48718156:48718309:48722817:48722910,	48718157	48718309	48718274	48718274	Frame_Shift_Del	A	-	p.K523fs
LIHC	TCGA-DD-A1EG-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765753	50765753	Frame_Shift_Del	A	-	p.L634fs
LIHC	TCGA-DD-A1EG-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54093883:54094017:54096512:54096675:54101475:54101631,	54096513	54096675	54096571	54096571	Frame_Shift_Del	T	-	p.K1735fs
LIHC	TCGA-DD-A1EG-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54125437:54125491:54127017:54127154:54128486:54128696,	54127018	54127154	54127105	54127105	Frame_Shift_Del	T	-	p.N1112fs
LIHC	TCGA-DD-A1EG-01	PSME4	ENST00000404125.1	chr2	54150457:54150556:54152675:54152826:54153095:54153160,	54152676	54152826	54152762	54152762	Frame_Shift_Del	T	-	p.M575fs
LIHC	TCGA-DD-A1EG-01	C2orf73	ENST00000398634.2	chr2	54558123:54558138:54561953:54562161:54570856:54571010,	54561954	54562161	54562029	54562029	Frame_Shift_Del	A	-	p.G34fs
LIHC	TCGA-DD-A1EG-01	SPTBN1	ENST00000333896.5,ENST00000356805.4	chr2	54864849:54864940:54870119:54870266:54871459:54871723,	54870120	54870266	54870154	54870154	Frame_Shift_Del	C	-	p.A1285fs
LIHC	TCGA-DD-A1EG-01	EML6	ENST00000356458.6	chr2	55122409:55122537:55126777:55126919:55130180:55130333,	55126778	55126919	55126816	55126816	Frame_Shift_Del	C	-	p.H1007fs
LIHC	TCGA-DD-A1EG-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252295	55252295	Frame_Shift_Del	T	-	p.K980fs
LIHC	TCGA-DD-A1EG-01	CLHC1	ENST00000407122.1,ENST00000406076.1,ENST00000401408.1	chr2	55436765:55436967:55439808:55439942:55444946:55445134,	55439809	55439942	55439858	55439858	Frame_Shift_Del	T	-	p.K150fs
LIHC	TCGA-DD-A1EG-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000412148.1,ENST00000263630.8	chr2	55545978:55546140:55549663:55549828:55555429:55555532,	55549664	55549828	55549764	55549764	Frame_Shift_Del	G	-	p.P1022fs
LIHC	TCGA-DD-A1EG-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55601949:55602019:55615913:55616022:55645951:55646052,	55615914	55616022	55615986	55615986	Frame_Shift_Del	T	-	p.K67fs
LIHC	TCGA-DD-A1EG-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2	chr2	55899129:55899181:55900027:55900214:55906816:55906930,	55900028	55900214	55900045	55900045	Frame_Shift_Del	A	-	p.I283fs
LIHC	TCGA-DD-A1EG-01	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58312015:58312085:58313473:58313561:58315475:58315581,	58313474	58313561	58313524	58313524	Frame_Shift_Del	T	-	p.F103fs
LIHC	TCGA-DD-A1EG-01	REL	ENST00000295025.8,ENST00000394479.3	chr2	61121531:61121680:61128126:61128218:61144011:61144152,	61128127	61128218	61128169	61128169	Frame_Shift_Del	A	-	p.V115fs
LIHC	TCGA-DD-A1EG-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61298792:61298927:61300592:61300686:61304054:61304293,	61300593	61300686	61300638	61300638	Frame_Shift_Del	A	-	p.E128fs
LIHC	TCGA-DD-A1EG-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61298792:61298927:61304054:61304293:61308586:61308645,61300592:61300686:61304054:61304293:61308586:61308645,	61304055	61304293	61304106	61304106	Frame_Shift_Del	T	-	p.D161fs
LIHC	TCGA-DD-A1EG-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61304054:61304293:61308586:61308645:61310288:61310449,	61308587	61308645	61308630	61308630	Frame_Shift_Del	A	-	p.L238fs
LIHC	TCGA-DD-A1EG-01	KIAA1841	ENST00000453873.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61319598:61319722:61324834:61324987:61330987:61331088,	61324835	61324987	61324950	61324950	Frame_Shift_Del	A	-	p.Q443fs
LIHC	TCGA-DD-A1EG-01	USP34	ENST00000463046.1,ENST00000411912.1,ENST00000436269.1,ENST00000398571.2	chr2	61417405:61417549:61417652:61417793:61420035:61420115,	61417653	61417793	61417699	61417699	Frame_Shift_Del	A	-	p.L3228fs
LIHC	TCGA-DD-A1EG-01	USP34	ENST00000463046.1,ENST00000398571.2	chr2	61430274:61430398:61431390:61431515:61431631:61431736,	61431391	61431515	61431459	61431459	Frame_Shift_Del	T	-	p.S3106fs
LIHC	TCGA-DD-A1EG-01	USP34	ENST00000411912.1,ENST00000398571.2	chr2	61438906:61439064:61441194:61441829:61447444:61447503,	61441195	61441829	61441529	61441529	Frame_Shift_Del	A	-	p.F2783fs
LIHC	TCGA-DD-A1EG-01	USP34	ENST00000484179.1,ENST00000494867.1,ENST00000398571.2	chr2	61505522:61505578:61507378:61507483:61508224:61508274,	61507379	61507483	61507429	61507429	Frame_Shift_Del	A	-	p.W1736fs
LIHC	TCGA-DD-A1EG-01	USP34	ENST00000398571.2	chr2	61520598:61520685:61522083:61522167:61522302:61522425,	61522084	61522167	61522149	61522149	Frame_Shift_Del	A	-	p.Y1466fs
LIHC	TCGA-DD-A1EG-01	USP34	ENST00000398571.2	chr2	61546307:61546462:61552509:61552592:61558410:61558506,	61552510	61552592	61552559	61552559	Frame_Shift_Del	A	-	p.L988fs
LIHC	TCGA-DD-A1EG-01	USP34	ENST00000398571.2	chr2	61622317:61622368:61632842:61633263:61647880:61647968,	61632843	61633263	61633218	61633218	Frame_Shift_Del	A	-	p.F59fs
LIHC	TCGA-DD-A1EG-01	FAM161A	ENST00000404929.1	chr2	62063191:62063244:62065672:62065840:62066555:62066659,	62065673	62065840	62065681	62065681	Frame_Shift_Del	T	-	p.K581fs
LIHC	TCGA-DD-A1EG-01	FAM161A	ENST00000404929.1	chr2	62063191:62063244:62065672:62065840:62066555:62066659,	62065673	62065840	62065737	62065737	Frame_Shift_Del	C	-	p.A563fs
LIHC	TCGA-DD-A1EG-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62066725	62066725	Frame_Shift_Del	T	-	p.I472fs
LIHC	TCGA-DD-A1EG-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62066725	62066725	Frame_Shift_Del	T	-	p.I472fs
LIHC	TCGA-DD-A1EG-01	CCT4	ENST00000538252.1,ENST00000394440.3,ENST00000544079.1,ENST00000544185.1	chr2	62095747:62095841:62096574:62096688:62099216:62099278,	62096575	62096688	62096586	62096586	Frame_Shift_Del	T	-	p.I532fs
LIHC	TCGA-DD-A1EG-01	CCT4	ENST00000538252.1,ENST00000394440.3,ENST00000544079.1,ENST00000544185.1	chr2	62096574:62096688:62103229:62103369:62104054:62104161,62100331:62100428:62103229:62103369:62104054:62104161,	62103230	62103369	62103290	62103290	Frame_Shift_Del	A	-	p.L286fs
LIHC	TCGA-DD-A1EG-01	COMMD1	ENST00000311832.5	chr2	62132892:62132993:62227835:62228117:62362965:62363114,	62227836	62228117	62227896	62227896	Frame_Shift_Del	A	-	p.K82fs
LIHC	TCGA-DD-A1EG-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176136	63176136	Frame_Shift_Del	A	-	p.K755fs
LIHC	TCGA-DD-A1EG-01	WDPCP	ENST00000409354.2,ENST00000272321.7,ENST00000398544.3,ENST00000409120.1,ENST00000409199.1	chr2	63380048:63380080:63380629:63380709:63401804:63401967,	63380630	63380709	63380656	63380656	Frame_Shift_Del	A	-	p.L519fs
LIHC	TCGA-DD-A1EG-01	WDPCP	ENST00000409562.3,ENST00000409354.2,ENST00000272321.7,ENST00000398544.3,ENST00000409120.1,ENST00000409835.1,ENST00000409199.1,ENST00000417238.1	chr2	63605520:63605644:63609040:63609229:63631182:63631792,	63609041	63609229	63609185	63609185	Frame_Shift_Del	G	-	p.Q302fs
LIHC	TCGA-DD-A1EG-01	MDH1	ENST00000233114.8	chr2	63816131:63816180:63821621:63821720:63824532:63824672,63816131:63816180:63821621:63821720:63822556:63822653,	63821622	63821720	63821706	63821706	Frame_Shift_Del	T	-	p.F30fs
LIHC	TCGA-DD-A1EG-01	VPS54	ENST00000409558.4,ENST00000272322.4	chr2	64171733:64171789:64174516:64174624:64176170:64176297,	64174517	64174624	64174569	64174569	Frame_Shift_Del	A	-	p.L398fs
LIHC	TCGA-DD-A1EG-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778693	64778693	Frame_Shift_Del	G	-	p.G29fs
LIHC	TCGA-DD-A1EG-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778699	64778699	Frame_Shift_Del	T	-	p.F31fs
LIHC	TCGA-DD-A1EG-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778925	64778925	Frame_Shift_Del	T	-	p.V106fs
LIHC	TCGA-DD-A1EG-01	AFTPH	ENST00000422803.1,ENST00000409183.1,ENST00000238856.4,ENST00000498706.1,ENST00000409933.1,ENST00000238855.7	chr2	64796756:64796813:64800079:64800202:64806619:64806680,	64800080	64800202	64800129	64800129	Frame_Shift_Del	A	-	p.E774fs
LIHC	TCGA-DD-A1EG-01	ACTR2	ENST00000260641.5,ENST00000377982.4	chr2	65488380:65488526:65492176:65492309:65495697:65497280,	65492177	65492309	65492281	65492281	Frame_Shift_Del	T	-	p.V329fs
LIHC	TCGA-DD-A1EG-01	MEIS1	ENST00000542964.1	chr2	66691240:66691352:66739280:66739426:66775074:66775151,66723157:66723332:66739280:66739426:66775074:66775151,	66739281	66739426	66739346	66739346	Frame_Shift_Del	A	-	p.K271fs
LIHC	TCGA-DD-A1EG-01	ETAA1	ENST00000272342.5	chr2	67626358:67626429:67626681:67626758:67629993:67630106,	67626682	67626758	67626692	67626692	Frame_Shift_Del	A	-	p.R121fs
LIHC	TCGA-DD-A1EG-01	CNRIP1	ENST00000263655.3,ENST00000481714.1	chr2	68520197:68521158:68544288:68544439:68546353:68546454,	68544289	68544439	68544378	68544378	Frame_Shift_Del	C	-	p.D81fs
LIHC	TCGA-DD-A1EG-01	APLF	ENST00000445692.1,ENST00000529851.1,ENST00000303795.4	chr2	68772318:68772444:68794472:68794519:68804951:68805135,	68794473	68794519	68794480	68794480	Frame_Shift_Del	C	-	p.P432fs
LIHC	TCGA-DD-A1EG-01	GMCL1	ENST00000282570.3,ENST00000471404.1	chr2	70070280:70070393:70071262:70071328:70074674:70074759,	70071263	70071328	70071313	70071313	Frame_Shift_Del	T	-	p.L248fs
LIHC	TCGA-DD-A1EG-01	GMCL1	ENST00000282570.3,ENST00000471404.1	chr2	70074674:70074759:70076783:70076874:70081954:70081992,	70076784	70076874	70076825	70076825	Frame_Shift_Del	A	-	p.L295fs
LIHC	TCGA-DD-A1EG-01	PCYOX1	ENST00000545138.1,ENST00000451279.1,ENST00000433351.2,ENST00000264441.5,ENST00000422380.1,ENST00000414812.1,ENST00000505044.2	chr2	70486491:70486698:70488343:70488518:70502090:70502216,	70488344	70488518	70488442	70488442	Frame_Shift_Del	A	-	p.K140fs
LIHC	TCGA-DD-A1EG-01	ADD2	ENST00000413157.2,ENST00000403045.2,ENST00000355733.3,ENST00000264436.4,ENST00000407644.2,ENST00000430656.1	chr2	70905835:70906093:70910722:70910899:70915155:70915254,	70910723	70910899	70910874	70910874	Frame_Shift_Del	C	-	p.G325fs
LIHC	TCGA-DD-A1EG-01	CLEC4F	ENST00000426626.1,ENST00000272367.2	chr2	71043125:71044244:71046486:71046576:71046906:71047023,	71046487	71046576	71046497	71046497	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-DD-A1EG-01	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351381	71351381	Frame_Shift_Del	A	-	p.F111fs
LIHC	TCGA-DD-A1EG-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71653924	71653924	Frame_Shift_Del	T	-	p.L1642fs
LIHC	TCGA-DD-A1EG-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71654304	71654304	Frame_Shift_Del	A	-	p.K1769fs
LIHC	TCGA-DD-A1EG-01	ZNF638	ENST00000472758.1	chr2	71654479:71654544:71655660:71655781:71658456:71658558,	71655661	71655781	71655725	71655725	Frame_Shift_Del	A	-	p.E1865fs
LIHC	TCGA-DD-A1EG-01	ZNF638	ENST00000409544.1,ENST00000461991.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71654479:71654544:71655676:71655781:71658456:71658558,	71655677	71655781	71655725	71655725	Frame_Shift_Del	A	-	p.E1865fs
LIHC	TCGA-DD-A1EG-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000479049.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71906186:71906365:71908130:71908240:71909659:71909807,	71908131	71908240	71908149	71908149	Frame_Shift_Del	T	-	p.L1989fs
LIHC	TCGA-DD-A1EG-01	SMYD5	ENST00000389501.4	chr2	73450553:73450660:73451074:73451131:73451993:73452088,	73451075	73451131	73451086	73451086	Frame_Shift_Del	T	-	p.F299fs
LIHC	TCGA-DD-A1EG-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73676725	73676725	Frame_Shift_Del	A	-	p.E1023fs
LIHC	TCGA-DD-A1EG-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677155	73677155	Frame_Shift_Del	G	-	p.E1166fs
LIHC	TCGA-DD-A1EG-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678018	73678018	Frame_Shift_Del	T	-	p.V1454fs
LIHC	TCGA-DD-A1EG-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6,ENST00000423048.1	chr2	73777393:73777564:73784346:73784481:73786098:73786269,	73784347	73784481	73784394	73784394	Frame_Shift_Del	A	-	p.K3376fs
LIHC	TCGA-DD-A1EG-01	DGUOK	ENST00000418996.1,ENST00000348222.1	chr2	74173845:74174033:74185272:74185372:74185836:74185915,	74185273	74185372	74185330	74185330	Frame_Shift_Del	T	-	p.D255fs
LIHC	TCGA-DD-A1EG-01	TET3	ENST00000409262.3	chr2	74307624:74307718:74314956:74315165:74317023:74317174,	74314957	74315165	74315133	74315133	Frame_Shift_Del	C	-	p.N817fs
LIHC	TCGA-DD-A1EG-01	WDR54	ENST00000480089.1	chr2	74648885:74648943:74649246:74649502:74649996:74650059,	74649247	74649502	74649485	74649485	Frame_Shift_Del	C	-	p.P70fs
LIHC	TCGA-DD-A1EG-01	WDR54	ENST00000493982.1,ENST00000426787.1,ENST00000348227.4,ENST00000469932.1	chr2	74648885:74648943:74649279:74649502:74649996:74650059,	74649280	74649502	74649485	74649485	Frame_Shift_Del	C	-	p.P70fs
LIHC	TCGA-DD-A1EG-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755543:74755616:74755877:74756062:74756258:74756409,	74755878	74756062	74755892	74755892	Frame_Shift_Del	C	-	p.G170fs
LIHC	TCGA-DD-A1EG-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74755892	74755892	Frame_Shift_Del	C	-	p.G170fs
LIHC	TCGA-DD-A1EG-01	DOK1	ENST00000429631.1	chr2	74782705:74782795:74783020:74783205:74783434:74783748,74782332:74782580:74783020:74783205:74783434:74783748,	74783021	74783205	74783130	74783130	Frame_Shift_Del	G	-	p.V188fs
LIHC	TCGA-DD-A1EG-01	HK2	ENST00000409174.1,ENST00000290573.2	chr2	75113420:75113520:75113616:75113800:75115029:75115185,	75113617	75113800	75113718	75113718	Frame_Shift_Del	G	-	p.G713fs
LIHC	TCGA-DD-A1EG-01	REG1A	ENST00000485184.1,ENST00000233735.1	chr2	79348687:79348806:79349113:79349251:79349966:79350056,	79349114	79349251	79349246	79349246	Frame_Shift_Del	A	-	p.K107fs
LIHC	TCGA-DD-A1EG-01	CTNNA2	ENST00000466387.1,ENST00000496558.1,ENST00000402739.4,ENST00000541047.1,ENST00000361291.4,ENST00000409971.2,ENST00000540488.1	chr2	79878682:79878784:79971512:79971708:80085138:80085192,	79971513	79971708	79971628	79971628	Frame_Shift_Del	A	-	p.E73fs
LIHC	TCGA-DD-A1EG-01	SUCLG1	ENST00000491123.1,ENST00000393868.2	chr2	84650683:84650896:84652538:84652727:84658631:84658783,	84652539	84652727	84652601	84652601	Frame_Shift_Del	G	-	p.L318fs
LIHC	TCGA-DD-A1EG-01	SUCLG1	ENST00000487809.1,ENST00000393868.2	chr2	84652538:84652727:84658631:84658783:84660475:84660559,	84658632	84658783	84658648	84658648	Frame_Shift_Del	A	-	p.L270fs
LIHC	TCGA-DD-A1EG-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84756027:84756290:84771356:84771624:84774391:84774526,	84771357	84771624	84771511	84771511	Frame_Shift_Del	T	-	p.F273fs
LIHC	TCGA-DD-A1EG-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84774391:84774526:84774615:84774736:84775411:84775541,	84774616	84774736	84774651	84774651	Frame_Shift_Del	A	-	p.A367fs
LIHC	TCGA-DD-A1EG-01	DNAH6	ENST00000398278.2,ENST00000602588.1	chr2	84908480:84908652:84913607:84913681:84915562:84915717,	84913608	84913681	84913615	84913615	Frame_Shift_Del	T	-	p.H2357fs
LIHC	TCGA-DD-A1EG-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	84930518:84930686:84931190:84931426:84932609:84932871,	84931191	84931426	84931243	84931243	Frame_Shift_Del	A	-	p.E2761fs
LIHC	TCGA-DD-A1EG-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	85040181:85040254:85041094:85041246:85042984:85043207,	85041095	85041246	85041104	85041104	Frame_Shift_Del	A	-	p.Q4003fs
LIHC	TCGA-DD-A1EG-01	KCMF1	ENST00000409785.4	chr2	85198215:85198590:85255011:85255179:85262138:85262248,	85255012	85255179	85255043	85255043	Frame_Shift_Del	T	-	p.N16fs
LIHC	TCGA-DD-A1EG-01	TCF7L1	ENST00000282111.3	chr2	85529606:85529739:85531017:85531120:85531377:85531461,	85531018	85531120	85531022	85531022	Frame_Shift_Del	C	-	p.I221fs
LIHC	TCGA-DD-A1EG-01	RETSAT	ENST00000263854.6,ENST00000438611.4,ENST00000429806.1	chr2	85570815:85570921:85571361:85571471:85571716:85571855,	85571362	85571471	85571441	85571441	Frame_Shift_Del	T	-	p.E430fs
LIHC	TCGA-DD-A1EG-01	CAPG	ENST00000449030.1,ENST00000409724.1,ENST00000409670.1,ENST00000263867.4,ENST00000447219.2,ENST00000483659.1,ENST00000459793.2,ENST00000409275.1,ENST00000439385.1,ENST00000409921.1	chr2	85626357:85626408:85628287:85628452:85628651:85628711,	85628288	85628452	85628406	85628406	Frame_Shift_Del	G	-	p.P133fs
LIHC	TCGA-DD-A1EG-01	USP39	ENST00000459775.1,ENST00000493829.1,ENST00000450066.2,ENST00000409766.3,ENST00000323701.6,ENST00000409470.1,ENST00000409025.1	chr2	85857843:85858069:85863175:85863253:85864491:85864559,	85863176	85863253	85863181	85863181	Frame_Shift_Del	G	-	p.G319fs
LIHC	TCGA-DD-A1EG-01	ATOH8	ENST00000306279.3	chr2	85981769:85982080:85991113:85991305:86014007:86014077,	85991114	85991305	85991271	85991271	Frame_Shift_Del	C	-	p.T309fs
LIHC	TCGA-DD-A1EG-01	ST3GAL5	ENST00000461206.1,ENST00000393805.1,ENST00000377332.3,ENST00000393808.3	chr2	86067087:86067515:86071518:86071677:86073499:86073547,	86071519	86071677	86071632	86071632	Frame_Shift_Del	T	-	p.I299fs
LIHC	TCGA-DD-A1EG-01	ST3GAL5	ENST00000393805.1,ENST00000377332.3,ENST00000393808.3	chr2	86071518:86071677:86073499:86073686:86074983:86075327,	86073500	86073686	86073637	86073637	Frame_Shift_Del	T	-	p.T239fs
LIHC	TCGA-DD-A1EG-01	ST3GAL5	ENST00000393805.1,ENST00000377332.3,ENST00000393808.3	chr2	86073616:86073686:86074983:86075327:86088303:86088415,	86074984	86075327	86075199	86075199	Frame_Shift_Del	G	-	p.P149fs
LIHC	TCGA-DD-A1EG-01	ST3GAL5	ENST00000306262.5	chr2	86073616:86073686:86074983:86075504:86088303:86088415,	86074984	86075504	86075199	86075199	Frame_Shift_Del	G	-	p.P149fs
LIHC	TCGA-DD-A1EG-01	POLR1A	ENST00000486964.1,ENST00000409681.1	chr2	86325733:86325883:86327090:86327295:86332822:86332996,	86327091	86327295	86327122	86327122	Frame_Shift_Del	G	-	p.P84fs
LIHC	TCGA-DD-A1EG-01	REEP1	ENST00000437769.1,ENST00000541910.1	chr2	86491116:86491164:86509292:86509365:86564601:86564712,	86509293	86509365	86509349	86509349	Frame_Shift_Del	G	-	p.L17fs
LIHC	TCGA-DD-A1EG-01	FABP1	ENST00000295834.3	chr2	88422509:88422623:88424012:88424105:88425694:88425867,	88424013	88424105	88424056	88424056	Frame_Shift_Del	T	-	p.N97fs
LIHC	TCGA-DD-A1EG-01	THNSL2	ENST00000377254.3,ENST00000343544.4,ENST00000402102.1	chr2	88470745:88470826:88472657:88472892:88474157:88474314,88469916:88469975:88472657:88472892:88474157:88474314,	88472658	88472892	88472698	88472698	Frame_Shift_Del	C	-	p.A10fs
LIHC	TCGA-DD-A1EG-01	MRPS5	ENST00000272418.2	chr2	95767421:95767468:95770384:95770475:95772167:95772202,	95770385	95770475	95770404	95770404	Frame_Shift_Del	C	-	p.G248fs
LIHC	TCGA-DD-A1EG-01	PROM2	ENST00000431567.1,ENST00000403131.2,ENST00000317620.9,ENST00000317668.4,ENST00000542147.1	chr2	95941677:95941880:95941974:95942095:95943111:95943244,95941677:95941880:95941974:95942095:95942341:95942405,	95941975	95942095	95942070	95942070	Frame_Shift_Del	G	-	p.W198fs
LIHC	TCGA-DD-A1EG-01	TMEM127	ENST00000432959.1	chr2	96920570:96920735:96930875:96931227:96931606:96931732,	96930876	96931227	96930918	96930918	Frame_Shift_Del	C	-	p.V68fs
LIHC	TCGA-DD-A1EG-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025961	97025961	Frame_Shift_Del	T	-	p.F469fs
LIHC	TCGA-DD-A1EG-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025978	97025978	Frame_Shift_Del	A	-	p.R474fs
LIHC	TCGA-DD-A1EG-01	ARID5A	ENST00000357485.3,ENST00000454558.2,ENST00000470579.1	chr2	97213141:97213254:97215057:97215196:97215489:97215542,	97215058	97215196	97215160	97215160	Frame_Shift_Del	C	-	p.P7fs
LIHC	TCGA-DD-A1EG-01	FAM178B	ENST00000490605.2,ENST00000520074.1,ENST00000417561.3,ENST00000478671.2,ENST00000327896.3	chr2	97589305:97589320:97594942:97595057:97613554:97613639,	97594943	97595057	97594963	97594963	Frame_Shift_Del	C	-	p.G539fs
LIHC	TCGA-DD-A1EG-01	ACTR1B	ENST00000451664.1,ENST00000289228.5	chr2	98275857:98275940:98277033:98277109:98278344:98278409,	98277034	98277109	98277060	98277060	Frame_Shift_Del	C	-	p.D55fs
LIHC	TCGA-DD-A1EG-01	TMEM131	ENST00000186436.5	chr2	98392305:98392481:98408848:98409447:98409857:98410016,	98408849	98409447	98409053	98409053	Frame_Shift_Del	G	-	p.Q1314fs
LIHC	TCGA-DD-A1EG-01	VWA3B	ENST00000432242.1	chr2	98732114:98732209:98735982:98736226:98737761:98737875,	98735983	98736226	98736017	98736017	Frame_Shift_Del	T	-	p.H111fs
LIHC	TCGA-DD-A1EG-01	VWA3B	ENST00000416277.1,ENST00000448638.1,ENST00000433678.1,ENST00000409460.1,ENST00000477737.1,ENST00000435344.1	chr2	98732114:98732209:98735975:98736226:98737761:98737875,	98735976	98736226	98736017	98736017	Frame_Shift_Del	T	-	p.H111fs
LIHC	TCGA-DD-A1EG-01	VWA3B	ENST00000477737.1,ENST00000432242.1,ENST00000495571.1,ENST00000489630.1	chr2	98920164:98920265:98928281:98928495:98928662:98928904,	98928282	98928495	98928474	98928474	Frame_Shift_Del	G	-	p.Q1238fs
LIHC	TCGA-DD-A1EG-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232795	99232795	Frame_Shift_Del	T	-	p.L193fs
LIHC	TCGA-DD-A1EG-01	MGAT4A	ENST00000393487.1,ENST00000409391.1,ENST00000414521.2,ENST00000264968.3	chr2	99260385:99260516:99261890:99262005:99271907:99271983,	99261891	99262005	99261977	99261977	Frame_Shift_Del	T	-	p.N268fs
LIHC	TCGA-DD-A1EG-01	KIAA1211L	ENST00000397899.2	chr2	99413830:99414000:99438319:99440000:99443437:99443632,	99438320	99440000	99438339	99438339	Frame_Shift_Del	C	-	p.R799fs
LIHC	TCGA-DD-A1EG-01	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651756	99651756	Frame_Shift_Del	T	-	p.K517fs
LIHC	TCGA-DD-A1EG-01	MITD1	ENST00000409107.1,ENST00000422537.2,ENST00000289359.2	chr2	99787972:99788109:99790377:99790479:99797293:99797390,	99790378	99790479	99790393	99790393	Frame_Shift_Del	C	-	p.D80fs
LIHC	TCGA-DD-A1EG-01	REV1	ENST00000438366.1	chr2	100022545:100022568:100022786:100022893:100024490:100024593,	100022787	100022893	100022874	100022874	Frame_Shift_Del	T	-	p.S843fs
LIHC	TCGA-DD-A1EG-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000465835.1,ENST00000413697.1,ENST00000477121.1	chr2	100022545:100022568:100022786:100022952:100024490:100024593,	100022787	100022952	100022874	100022874	Frame_Shift_Del	T	-	p.S843fs
LIHC	TCGA-DD-A1EG-01	REV1	ENST00000258428.3,ENST00000413697.1	chr2	100078957:100079084:100081383:100081447:100106278:100106435,	100081384	100081447	100081403	100081403	Frame_Shift_Del	T	-	p.N12fs
LIHC	TCGA-DD-A1EG-01	AFF3	ENST00000356421.2,ENST00000445815.1,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2	chr2	100175336:100175430:100176826:100176898:100181948:100182085,	100176827	100176898	100176865	100176865	Frame_Shift_Del	G	-	p.P1051fs
LIHC	TCGA-DD-A1EG-01	TBC1D8	ENST00000376840.4,ENST00000409318.1	chr2	101650005:101650220:101652479:101652630:101653993:101654170,	101652480	101652630	101652612	101652612	Frame_Shift_Del	T	-	p.I491fs
LIHC	TCGA-DD-A1EG-01	TBC1D8	ENST00000409318.1	chr2	101675913:101676001:101706670:101706826:101767588:101767715,	101706671	101706826	101706726	101706726	Frame_Shift_Del	G	-	p.P76fs
LIHC	TCGA-DD-A1EG-01	RFX8	ENST00000481179.1,ENST00000376826.2,ENST00000428343.1	chr2	102013865:102014186:102018897:102019214:102022404:102022519,	102018898	102019214	102019061	102019061	Frame_Shift_Del	A	-	p.F474fs
LIHC	TCGA-DD-A1EG-01	MAP4K4	ENST00000350198.4	chr2	102501648:102501749:102503549:102503723:102504239:102504399,	102503550	102503723	102503553	102503553	Frame_Shift_Del	T	-	p.F979fs
LIHC	TCGA-DD-A1EG-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102501648:102501749:102503549:102503699:102504239:102504399,	102503550	102503699	102503553	102503553	Frame_Shift_Del	T	-	p.F979fs
LIHC	TCGA-DD-A1EG-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000350198.4,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102504239:102504399:102505257:102505397:102507627:102507783,	102505258	102505397	102505353	102505353	Frame_Shift_Del	A	-	p.K1113fs
LIHC	TCGA-DD-A1EG-01	IL1R1	ENST00000422532.2	chr2	102781233:102781463:102781684:102781764:102782572:102782633,	102781685	102781764	102781717	102781717	Frame_Shift_Del	T	-	p.F148fs
LIHC	TCGA-DD-A1EG-01	IL1R1	ENST00000409929.1,ENST00000424272.1,ENST00000428279.1,ENST00000410023.1,ENST00000430171.1,ENST00000409329.1,ENST00000409288.1,ENST00000233946.3	chr2	102781233:102781468:102781574:102781764:102782572:102782719,	102781575	102781764	102781717	102781717	Frame_Shift_Del	T	-	p.F148fs
LIHC	TCGA-DD-A1EG-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000334376.3,ENST00000233957.1	chr2	102979120:102979178:102984284:102984528:102988412:102988578,	102984285	102984528	102984494	102984494	Frame_Shift_Del	T	-	p.L90fs
LIHC	TCGA-DD-A1EG-01	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040537	103040537	Frame_Shift_Del	T	-	p.F113fs
LIHC	TCGA-DD-A1EG-01	TMEM182	ENST00000486293.1	chr2	103380787:103380886:103414321:103414459:103431206:103431563,103380787:103380886:103414321:103414459:103459870:103460352,	103414322	103414459	103414356	103414356	Frame_Shift_Del	G	-	p.L122fs
LIHC	TCGA-DD-A1EG-01	MRPS9	ENST00000258455.3	chr2	105665628:105665808:105687770:105687833:105687916:105687947,	105687771	105687833	105687791	105687791	Frame_Shift_Del	C	-	p.F112fs
LIHC	TCGA-DD-A1EG-01	FHL2	ENST00000530340.1,ENST00000393352.3,ENST00000393353.3,ENST00000322142.8,ENST00000344213.4,ENST00000358129.4,ENST00000409807.1,ENST00000452732.1,ENST00000408995.1,ENST00000409177.1	chr2	105979741:105979928:105984026:105984196:106002817:106002997,105979741:105979928:105984026:105984196:105990015:105990190,	105984027	105984196	105984137	105984137	Frame_Shift_Del	G	-	p.R247fs
LIHC	TCGA-DD-A1EG-01	NCK2	ENST00000522586.1	chr2	106433014:106433070:106471506:106471745:106509437:106509632,	106471507	106471745	106471663	106471663	Frame_Shift_Del	G	-	p.T48fs
LIHC	TCGA-DD-A1EG-01	NCK2	ENST00000233154.4,ENST00000393348.2	chr2	106433014:106433070:106471503:106471745:106509437:106509632,106433014:106433070:106471503:106471745:106497783:106497888,	106471504	106471745	106471663	106471663	Frame_Shift_Del	G	-	p.T48fs
LIHC	TCGA-DD-A1EG-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460035	107460035	Frame_Shift_Del	A	-	p.F133fs
LIHC	TCGA-DD-A1EG-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460091	107460091	Frame_Shift_Del	G	-	p.Q115fs
LIHC	TCGA-DD-A1EG-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086188	109086188	Frame_Shift_Del	A	-	p.K135fs
LIHC	TCGA-DD-A1EG-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086706	109086706	Frame_Shift_Del	A	-	p.S307fs
LIHC	TCGA-DD-A1EG-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086874	109086874	Frame_Shift_Del	A	-	p.L363fs
LIHC	TCGA-DD-A1EG-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087248	109087248	Frame_Shift_Del	A	-	p.E488fs
LIHC	TCGA-DD-A1EG-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087914	109087914	Frame_Shift_Del	T	-	p.V710fs
LIHC	TCGA-DD-A1EG-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088391	109088391	Frame_Shift_Del	A	-	p.E869fs
LIHC	TCGA-DD-A1EG-01	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6	chr2	109098742:109098907:109099517:109099622:109100604:109100767,	109099518	109099622	109099617	109099617	Frame_Shift_Del	A	-	p.K1150fs
LIHC	TCGA-DD-A1EG-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380354	109380354	Frame_Shift_Del	A	-	p.Q1120fs
LIHC	TCGA-DD-A1EG-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384184	109384184	Frame_Shift_Del	G	-	p.G2397fs
LIHC	TCGA-DD-A1EG-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384578	109384578	Frame_Shift_Del	A	-	p.E2528fs
LIHC	TCGA-DD-A1EG-01	CCDC138	ENST00000295124.4,ENST00000412964.2,ENST00000409529.2	chr2	109410995:109411177:109414883:109415042:109421344:109421464,	109414884	109415042	109414963	109414963	Frame_Shift_Del	T	-	p.L219fs
LIHC	TCGA-DD-A1EG-01	CCDC138	ENST00000295124.4,ENST00000412964.2,ENST00000409529.2	chr2	109410995:109411177:109414883:109415042:109421344:109421464,	109414884	109415042	109414998	109414998	Frame_Shift_Del	G	-	p.G231fs
LIHC	TCGA-DD-A1EG-01	SEPT10	ENST00000415095.1,ENST00000397712.2	chr2	110332157:110332344:110350627:110350696:110371374:110371412,110325495:110325553:110350627:110350696:110371374:110371412,110343324:110343415:110350627:110350696:110371374:110371412,	110350628	110350696	110350669	110350669	Frame_Shift_Del	T	-	p.T21fs
LIHC	TCGA-DD-A1EG-01	SEPT10	ENST00000425498.1	chr2	110325495:110325553:110350623:110350696:110371374:110371412,	110350624	110350696	110350669	110350669	Frame_Shift_Del	T	-	p.T21fs
LIHC	TCGA-DD-A1EG-01	BUB1	ENST00000535254.1,ENST00000409311.1,ENST00000302759.6,ENST00000466333.1	chr2	111399695:111399811:111406810:111406954:111408122:111408316,	111406811	111406954	111406915	111406915	Frame_Shift_Del	A	-	p.F728fs
LIHC	TCGA-DD-A1EG-01	BUB1	ENST00000535254.1,ENST00000409311.1,ENST00000302759.6,ENST00000466333.1	chr2	111417554:111417613:111419158:111419418:111423839:111423991,	111419159	111419418	111419209	111419209	Frame_Shift_Del	T	-	p.K369fs
LIHC	TCGA-DD-A1EG-01	BCL2L11	ENST00000393256.3,ENST00000357757.2	chr2	111878505:111878765:111881309:111881716:111907620:111907724,	111881310	111881716	111881417	111881417	Frame_Shift_Del	C	-	p.A32fs
LIHC	TCGA-DD-A1EG-01	BCL2L11	ENST00000393253.2	chr2	111878505:111878765:111881309:111881446:111907620:111907724,	111881310	111881446	111881417	111881417	Frame_Shift_Del	C	-	p.A32fs
LIHC	TCGA-DD-A1EG-01	ANAPC1	ENST00000427997.1,ENST00000341068.3	chr2	112582542:112582613:112582707:112582744:112583353:112583432,	112582708	112582744	112582739	112582739	Frame_Shift_Del	G	-	p.Q904fs
LIHC	TCGA-DD-A1EG-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112740418:112740570:112751827:112751981:112754899:112755053,	112751828	112751981	112751847	112751847	Frame_Shift_Del	T	-	p.V439fs
LIHC	TCGA-DD-A1EG-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112765959:112766052:112767524:112767643:112776989:112777099,	112767525	112767643	112767573	112767573	Frame_Shift_Del	T	-	p.I670fs
LIHC	TCGA-DD-A1EG-01	TMEM87B	ENST00000283206.4,ENST00000452614.1,ENST00000452029.1	chr2	112817553:112817614:112821738:112821830:112824512:112824644,	112821739	112821830	112821788	112821788	Frame_Shift_Del	T	-	p.H92fs
LIHC	TCGA-DD-A1EG-01	TMEM87B	ENST00000283206.4	chr2	112821738:112821830:112824512:112824644:112832488:112832539,	112824513	112824644	112824523	112824523	Frame_Shift_Del	A	-	p.Q110fs
LIHC	TCGA-DD-A1EG-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2,ENST00000468475.1	chr2	113304997:113305144:113306843:113306976:113308442:113308485,	113306844	113306976	113306858	113306858	Frame_Shift_Del	T	-	p.Y169fs
LIHC	TCGA-DD-A1EG-01	SLC20A1	ENST00000272542.3	chr2	113417963:113418149:113418718:113418803:113420440:113421402,	113418719	113418803	113418723	113418723	Frame_Shift_Del	T	-	p.F600fs
LIHC	TCGA-DD-A1EG-01	NT5DC4	ENST00000497526.1,ENST00000327581.4	chr2	113482750:113482817:113482958:113483129:113483814:113483866,	113482959	113483129	113483028	113483028	Frame_Shift_Del	T	-	p.I319fs
LIHC	TCGA-DD-A1EG-01	PSD4	ENST00000409656.1,ENST00000245796.6	chr2	113955140:113955211:113955323:113955490:113956316:113956407,	113955324	113955490	113955362	113955362	Frame_Shift_Del	G	-	p.V832fs
LIHC	TCGA-DD-A1EG-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000465592.1	chr2	113955140:113955211:113955326:113955490:113956316:113956407,	113955327	113955490	113955362	113955362	Frame_Shift_Del	G	-	p.V832fs
LIHC	TCGA-DD-A1EG-01	SLC35F5	ENST00000409106.1,ENST00000245680.2	chr2	114493353:114493435:114500268:114500456:114501289:114501371,	114500269	114500456	114500361	114500361	Frame_Shift_Del	A	-	p.Y220fs
LIHC	TCGA-DD-A1EG-01	SLC35F5	ENST00000409342.1,ENST00000409106.1,ENST00000245680.2,ENST00000498768.1	chr2	114503853:114503916:114508001:114508145:114512741:114512883,	114508002	114508145	114508137	114508137	Frame_Shift_Del	A	-	p.F94fs
LIHC	TCGA-DD-A1EG-01	ACTR3	ENST00000536059.1,ENST00000263238.2,ENST00000535589.2	chr2	114697535:114697679:114699762:114699936:114709055:114709148,	114699763	114699936	114699922	114699922	Frame_Shift_Del	T	-	p.F283fs
LIHC	TCGA-DD-A1EG-01	INSIG2	ENST00000245787.4	chr2	118846049:118846117:118853994:118854376:118860772:118860857,	118853995	118854376	118854166	118854166	Frame_Shift_Del	A	-	p.K13fs
LIHC	TCGA-DD-A1EG-01	STEAP3	ENST00000409811.1	chr2	120012259:120012424:120015032:120015264:120020632:120020915,	120015033	120015264	120015101	120015101	Frame_Shift_Del	C	-	p.D418fs
LIHC	TCGA-DD-A1EG-01	TMEM177	ENST00000409951.1	chr2	120436778:120436852:120438407:120438699:120443233:120443330,	120438408	120438699	120438676	120438676	Frame_Shift_Del	T	-	p.F83fs
LIHC	TCGA-DD-A1EG-01	PTPN4	ENST00000263708.2,ENST00000488279.2,ENST00000433888.1	chr2	120635039:120635118:120639361:120639406:120639672:120639722,	120639362	120639406	120639371	120639371	Frame_Shift_Del	T	-	p.Y126fs
LIHC	TCGA-DD-A1EG-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000482119.1,ENST00000314490.11,ENST00000472722.1	chr2	121554920:121555044:121684936:121685042:121708818:121709021,	121684937	121685042	121684969	121684969	Frame_Shift_Del	C	-	p.P61fs
LIHC	TCGA-DD-A1EG-01	TFCP2L1	ENST00000263707.5	chr2	121999934:122000045:122004393:122004546:122005739:122005812,	122004394	122004546	122004503	122004503	Frame_Shift_Del	C	-	p.G183fs
LIHC	TCGA-DD-A1EG-01	CLASP1	ENST00000263710.4	chr2	122135074:122135225:122139783:122139900:122144697:122144804,	122139784	122139900	122139815	122139815	Frame_Shift_Del	G	-	p.H1154fs
LIHC	TCGA-DD-A1EG-01	BIN1	ENST00000316724.5	chr2	127810997:127811021:127811480:127811588:127815048:127815177,	127811481	127811588	127811574	127811574	Frame_Shift_Del	C	-	p.G382fs
LIHC	TCGA-DD-A1EG-01	BIN1	ENST00000316724.5	chr2	127808747:127808819:127815048:127815177:127816586:127816731,127809830:127809938:127815048:127815177:127816586:127816731,127811480:127811588:127815048:127815177:127816586:127816731,	127815049	127815177	127815134	127815134	Frame_Shift_Del	G	-	p.P349fs
LIHC	TCGA-DD-A1EG-01	BIN1	ENST00000466111.1,ENST00000409400.1	chr2	127808729:127808819:127816586:127816731:127819690:127819773,	127816587	127816731	127816678	127816678	Frame_Shift_Del	G	-	p.P304fs
LIHC	TCGA-DD-A1EG-01	PROC	ENST00000442644.1	chr2	128180609:128180747:128180906:128180984:128183660:128183707,	128180907	128180984	128180953	128180953	Frame_Shift_Del	G	-	p.L223fs
LIHC	TCGA-DD-A1EG-01	PROC	ENST00000422777.3,ENST00000234071.3	chr2	128180609:128180747:128180849:128180984:128183660:128183707,	128180850	128180984	128180953	128180953	Frame_Shift_Del	G	-	p.L223fs
LIHC	TCGA-DD-A1EG-01	IWS1	ENST00000295321.4	chr2	128247407:128247519:128249546:128249664:128250856:128250986,	128249547	128249664	128249568	128249568	Frame_Shift_Del	C	-	p.D676fs
LIHC	TCGA-DD-A1EG-01	WDR33	ENST00000409658.3,ENST00000393006.1	chr2	128526506:128526575:128528351:128528578:128568585:128568721,	128528352	128528578	128528390	128528390	Frame_Shift_Del	T	-	p.T56fs
LIHC	TCGA-DD-A1EG-01	UGGT1	ENST00000259253.6,ENST00000376723.3,ENST00000375990.3	chr2	128932346:128932432:128934387:128934472:128935405:128935494,	128934388	128934472	128934449	128934449	Frame_Shift_Del	A	-	p.K1177fs
LIHC	TCGA-DD-A1EG-01	POTEF	ENST00000361163.4,ENST00000409914.2,ENST00000360967.5,ENST00000357462.5	chr2	130843386:130843568:130843915:130843960:130845639:130845710,	130843916	130843960	130843944	130843944	Frame_Shift_Del	G	-	p.P523fs
LIHC	TCGA-DD-A1EG-01	POTEF	ENST00000361163.4,ENST00000409914.2,ENST00000360967.5,ENST00000357462.5	chr2	130843386:130843568:130843915:130843960:130845639:130845710,	130843916	130843960	130843946	130843946	Frame_Shift_Del	T	-	p.E522fs
LIHC	TCGA-DD-A1EG-01	SMPD4	ENST00000453750.1,ENST00000439886.1,ENST00000351288.6,ENST00000412570.1,ENST00000452225.2,ENST00000339679.7,ENST00000491128.1,ENST00000454468.1,ENST00000443958.2,ENST00000431183.2,ENST00000482171.1,ENST00000426662.2,ENST00000409031.1,ENST00000433118.1	chr2	130910318:130910457:130910615:130910744:130910891:130911023,	130910616	130910744	130910702	130910702	Frame_Shift_Del	C	-	p.D729fs
LIHC	TCGA-DD-A1EG-01	MZT2B	ENST00000409255.1	chr2	130940252:130940348:130941359:130941539:130948041:130948052,	130941360	130941539	130941490	130941490	Frame_Shift_Del	C	-	p.G150fs
LIHC	TCGA-DD-A1EG-01	ARHGEF4	ENST00000525839.1,ENST00000355771.3,ENST00000439368.2,ENST00000490728.1,ENST00000326016.5,ENST00000392953.3	chr2	131797588:131797765:131797833:131798013:131798802:131798849,	131797834	131798013	131797980	131797980	Frame_Shift_Del	C	-	p.H357fs
LIHC	TCGA-DD-A1EG-01	ARHGEF4	ENST00000532720.1,ENST00000525839.1,ENST00000355771.3,ENST00000409303.1,ENST00000490728.1,ENST00000326016.5,ENST00000392953.3	chr2	131799387:131799517:131801024:131801156:131801871:131802115,	131801025	131801156	131801066	131801066	Frame_Shift_Del	G	-	p.S503fs
LIHC	TCGA-DD-A1EG-01	FAM168B	ENST00000409185.1,ENST00000389915.3	chr2	131812844:131813022:131813125:131813268:131829427:131829511,	131813126	131813268	131813146	131813146	Frame_Shift_Del	G	-	p.Q94fs
LIHC	TCGA-DD-A1EG-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290249	132290249	Frame_Shift_Del	C	-	p.H257fs
LIHC	TCGA-DD-A1EG-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135160558:135160708:135170439:135170586:135180373:135180490,	135170440	135170586	135170545	135170545	Frame_Shift_Del	A	-	p.K546fs
LIHC	TCGA-DD-A1EG-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135170439:135170586:135180373:135180490:135185935:135186010,	135180374	135180490	135180477	135180477	Frame_Shift_Del	T	-	p.I594fs
LIHC	TCGA-DD-A1EG-01	ZRANB3	ENST00000264159.6	chr2	136148371:136148390:136261898:136262066:136288095:136288146,136148371:136148390:136261898:136262066:136288696:136288769,	136261899	136262066	136261974	136261974	Frame_Shift_Del	A	-	p.L29fs
LIHC	TCGA-DD-A1EG-01	ZRANB3	ENST00000264159.6	chr2	136148371:136148390:136261898:136262066:136288095:136288146,136148371:136148390:136261898:136262066:136288696:136288769,	136261899	136262066	136262034	136262034	Frame_Shift_Del	T	-	p.K9fs
LIHC	TCGA-DD-A1EG-01	R3HDM1	ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4	chr2	136396468:136396692:136399105:136399360:136402948:136403097,	136399106	136399360	136399313	136399313	Frame_Shift_Del	A	-	p.E476fs
LIHC	TCGA-DD-A1EG-01	MCM6	ENST00000264156.2	chr2	136620176:136620318:136622582:136622733:136623701:136623847,	136622583	136622733	136622627	136622627	Frame_Shift_Del	T	-	p.N345fs
LIHC	TCGA-DD-A1EG-01	DARS	ENST00000537273.1	chr2	136718965:136719068:136736843:136736936:136740966:136741017,136718965:136719068:136736843:136736936:136742972:136743062,	136736844	136736936	136736896	136736896	Frame_Shift_Del	T	-	p.K55fs
LIHC	TCGA-DD-A1EG-01	SPOPL	ENST00000420679.1,ENST00000280098.4	chr2	139307726:139307864:139308052:139308174:139308543:139308624,139307726:139307864:139308052:139308174:139308472:139308624,	139308053	139308174	139308068	139308068	Frame_Shift_Del	T	-	p.F32fs
LIHC	TCGA-DD-A1EG-01	KYNU	ENST00000375773.2,ENST00000410015.2	chr2	143635252:143635305:143642917:143643105:143676177:143676298,	143642918	143643105	143643072	143643072	Frame_Shift_Del	T	-	p.F46fs
LIHC	TCGA-DD-A1EG-01	ARHGAP15	ENST00000295095.6	chr2	144244941:144245064:144276834:144276933:144313976:144314054,	144276835	144276933	144276841	144276841	Frame_Shift_Del	T	-	p.I278fs
LIHC	TCGA-DD-A1EG-01	ARHGAP15	ENST00000549436.1,ENST00000295095.6	chr2	144313976:144314054:144381701:144381836:144460987:144461093,	144381702	144381836	144381770	144381770	Frame_Shift_Del	T	-	p.F359fs
LIHC	TCGA-DD-A1EG-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156109	145156109	Frame_Shift_Del	G	-	p.P882fs
LIHC	TCGA-DD-A1EG-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156810	145156810	Frame_Shift_Del	G	-	p.P648fs
LIHC	TCGA-DD-A1EG-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156970	145156970	Frame_Shift_Del	G	-	p.P595fs
LIHC	TCGA-DD-A1EG-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156984	145156984	Frame_Shift_Del	A	-	p.F590fs
LIHC	TCGA-DD-A1EG-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157586	145157586	Frame_Shift_Del	T	-	p.I390fs
LIHC	TCGA-DD-A1EG-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148677798:148677913:148680541:148680680:148683599:148683730,	148680542	148680680	148680634	148680634	Frame_Shift_Del	G	-	p.M390fs
LIHC	TCGA-DD-A1EG-01	ORC4	ENST00000535373.1,ENST00000536575.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000392858.1	chr2	148701004:148701091:148705619:148705793:148712915:148712964,148701004:148701091:148705619:148705793:148709941:148710082,	148705620	148705793	148705769	148705769	Frame_Shift_Del	T	-	p.R205fs
LIHC	TCGA-DD-A1EG-01	MBD5	ENST00000404807.1,ENST00000407073.1	chr2	149220150:149220253:149221307:149221488:149225909:149228030,	149221308	149221488	149221338	149221338	Frame_Shift_Del	A	-	p.K83fs
LIHC	TCGA-DD-A1EG-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247035	149247035	Frame_Shift_Del	A	-	p.P1045fs
LIHC	TCGA-DD-A1EG-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247444	149247444	Frame_Shift_Del	T	-	p.F1182fs
LIHC	TCGA-DD-A1EG-01	RIF1	ENST00000433166.2,ENST00000444746.2,ENST00000494333.1,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152273074:152273202:152273320:152273415:152276703:152276893,	152273321	152273415	152273360	152273360	Frame_Shift_Del	A	-	p.K150fs
LIHC	TCGA-DD-A1EG-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152315324:152315424:152316513:152316633:152317651:152317803,	152316514	152316633	152316564	152316564	Frame_Shift_Del	A	-	p.S1002fs
LIHC	TCGA-DD-A1EG-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152319553	152319553	Frame_Shift_Del	A	-	p.R1173fs
LIHC	TCGA-DD-A1EG-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152319616	152319616	Frame_Shift_Del	T	-	p.S1194fs
LIHC	TCGA-DD-A1EG-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321393	152321393	Frame_Shift_Del	T	-	p.F1787fs
LIHC	TCGA-DD-A1EG-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321975	152321975	Frame_Shift_Del	C	-	p.P1981fs
LIHC	TCGA-DD-A1EG-01	NEB	ENST00000603639.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000397337.2,ENST00000409198.1,ENST00000172853.10,ENST00000397336.2,ENST00000421461.2	chr2	152349866:152349959:152350288:152350381:152350674:152350767,	152350289	152350381	152350370	152350370	Frame_Shift_Del	T	-	p.K8197fs
LIHC	TCGA-DD-A1EG-01	NEB	ENST00000413693.1	chr2	152350288:152350381:152350674:152350767:152352789:152352882,152348900:152349008:152350674:152350767:152361991:152362084,152348900:152349008:152350674:152350767:152352789:152352882,	152350675	152350767	152350744	152350744	Frame_Shift_Del	C	-	p.G8170fs
LIHC	TCGA-DD-A1EG-01	NEB	ENST00000397337.2,ENST00000397336.2	chr2	152354139:152354232:152354773:152354866:152355811:152355904,152354139:152354232:152354773:152354866:152357904:152357997,152354139:152354232:152354773:152354866:152359306:152359399,	152354774	152354866	152354825	152354825	Frame_Shift_Del	G	-	p.P8052fs
LIHC	TCGA-DD-A1EG-01	ARL6IP6	ENST00000463690.1,ENST00000495469.1,ENST00000326446.5,ENST00000425034.1	chr2	153577046:153577100:153591507:153591640:153616260:153616365,	153591508	153591640	153591590	153591590	Frame_Shift_Del	T	-	p.S179fs
LIHC	TCGA-DD-A1EG-01	NR4A2	ENST00000409572.1,ENST00000539077.1,ENST00000426264.1,ENST00000339562.4	chr2	157182255:157182512:157182661:157182840:157183229:157183432,	157182662	157182840	157182765	157182765	Frame_Shift_Del	A	-	p.F479fs
LIHC	TCGA-DD-A1EG-01	GPD2	ENST00000540309.1,ENST00000492005.1,ENST00000409674.1,ENST00000438166.2,ENST00000310454.6,ENST00000464846.1,ENST00000409125.4,ENST00000409861.1	chr2	157435597:157435676:157436201:157436300:157439304:157439426,	157436202	157436300	157436292	157436292	Frame_Shift_Del	T	-	p.F684fs
LIHC	TCGA-DD-A1EG-01	ACVR1	ENST00000263640.3,ENST00000539637.1,ENST00000424669.1,ENST00000434821.1,ENST00000412025.1,ENST00000410057.2,ENST00000440523.1	chr2	158636965:158637112:158655938:158656012:158674896:158675071,	158655939	158656012	158655955	158655955	Frame_Shift_Del	G	-	p.P17fs
LIHC	TCGA-DD-A1EG-01	PKP4	ENST00000457109.1	chr2	159389691:159389828:159433782:159433895:159459581:159459616,159389949:159390046:159433782:159433895:159459581:159459616,	159433783	159433895	159433823	159433823	Frame_Shift_Del	A	-	p.E58fs
LIHC	TCGA-DD-A1EG-01	DAPL1	ENST00000343761.4	chr2	159663594:159663627:159682907:159682999:159718920:159719293,	159682908	159682999	159682952	159682952	Frame_Shift_Del	T	-	p.P84fs
LIHC	TCGA-DD-A1EG-01	TANC1	ENST00000263635.6,ENST00000454300.1	chr2	160050767:160051004:160053118:160053304:160055485:160055564,	160053119	160053304	160053171	160053171	Frame_Shift_Del	G	-	p.R1011fs
LIHC	TCGA-DD-A1EG-01	WDSUB1	ENST00000409990.3,ENST00000392796.3,ENST00000358147.4,ENST00000359774.4	chr2	160092344:160092701:160104882:160105023:160112706:160112882,	160104883	160105023	160104962	160104962	Frame_Shift_Del	T	-	p.K398fs
LIHC	TCGA-DD-A1EG-01	WDSUB1	ENST00000409990.3,ENST00000409124.1,ENST00000392796.3,ENST00000359774.4	chr2	160116320:160116354:160128212:160128306:160132056:160132149,	160128213	160128306	160128293	160128293	Frame_Shift_Del	T	-	p.K230fs
LIHC	TCGA-DD-A1EG-01	BAZ2B	ENST00000392782.1,ENST00000355831.2,ENST00000392783.2,ENST00000472953.1	chr2	160285710:160285771:160287373:160287667:160289267:160289461,	160287374	160287667	160287417	160287417	Frame_Shift_Del	A	-	p.F717fs
LIHC	TCGA-DD-A1EG-01	MARCH7	ENST00000259050.4,ENST00000409175.1	chr2	160585519:160585686:160599571:160599764:160604315:160604624,160585519:160585686:160599571:160599764:160602280:160602448,	160599572	160599764	160599685	160599685	Frame_Shift_Del	A	-	p.S89fs
LIHC	TCGA-DD-A1EG-01	PLA2R1	ENST00000283243.7,ENST00000392771.1	chr2	160885360:160885474:160889469:160889643:160898535:160898709,	160889470	160889643	160889491	160889491	Frame_Shift_Del	T	-	p.T274fs
LIHC	TCGA-DD-A1EG-01	RBMS1	ENST00000409075.1,ENST00000491781.1,ENST00000409972.1,ENST00000348849.3,ENST00000392753.3,ENST00000409289.2,ENST00000474820.1	chr2	161143488:161143595:161157161:161157241:161159840:161159992,	161157162	161157241	161157199	161157199	Frame_Shift_Del	A	-	p.F201fs
LIHC	TCGA-DD-A1EG-01	IFIH1	ENST00000263642.2	chr2	163123988:163124079:163124596:163124787:163128735:163128897,	163124597	163124787	163124742	163124742	Frame_Shift_Del	T	-	p.T888fs
LIHC	TCGA-DD-A1EG-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000263915.3	chr2	165349332:165349692:165350940:165351034:165353517:165353562,	165350941	165351034	165350964	165350964	Frame_Shift_Del	T	-	p.I485fs
LIHC	TCGA-DD-A1EG-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000263915.3	chr2	165349332:165349692:165350940:165351034:165353517:165353562,	165350941	165351034	165351001	165351001	Frame_Shift_Del	G	-	p.P472fs
LIHC	TCGA-DD-A1EG-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000469573.1,ENST00000263915.3,ENST00000446413.2	chr2	165378489:165378627:165381513:165381588:165383523:165383645,	165381514	165381588	165381567	165381567	Frame_Shift_Del	C	-	p.V209fs
LIHC	TCGA-DD-A1EG-01	GRB14	ENST00000543549.1	chr2	165383523:165383645:165404169:165404326:165476196:165476329,165383523:165383645:165404169:165404326:165424824:165424994,	165404170	165404326	165404219	165404219	Frame_Shift_Del	A	-	p.I144fs
LIHC	TCGA-DD-A1EG-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165550985	165550985	Frame_Shift_Del	T	-	p.T973fs
LIHC	TCGA-DD-A1EG-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165550985	165550985	Frame_Shift_Del	T	-	p.T973fs
LIHC	TCGA-DD-A1EG-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551696	165551696	Frame_Shift_Del	T	-	p.I736fs
LIHC	TCGA-DD-A1EG-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551696	165551696	Frame_Shift_Del	T	-	p.I736fs
LIHC	TCGA-DD-A1EG-01	COBLL1	ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165555914:165556009:165557031:165557266:165560953:165561028,	165557032	165557266	165557180	165557180	Frame_Shift_Del	A	-	p.S438fs
LIHC	TCGA-DD-A1EG-01	SLC38A11	ENST00000303735.4	chr2	165795959:165796066:165802102:165802237:165809216:165809291,	165802103	165802237	165802107	165802107	Frame_Shift_Del	A	-	p.F64fs
LIHC	TCGA-DD-A1EG-01	SLC38A11	ENST00000303735.4	chr2	165795959:165796066:165802102:165802237:165809216:165809291,	165802103	165802237	165802159	165802159	Frame_Shift_Del	A	-	p.F47fs
LIHC	TCGA-DD-A1EG-01	SLC38A11	ENST00000303735.4	chr2	165795959:165796066:165802102:165802237:165809216:165809291,	165802103	165802237	165802163	165802163	Frame_Shift_Del	T	-	p.T46fs
LIHC	TCGA-DD-A1EG-01	SCN2A	ENST00000375427.2,ENST00000283256.6,ENST00000375437.2,ENST00000357398.3	chr2	166223726:166223881:166226635:166226809:166229734:166229857,	166226636	166226809	166226767	166226767	Frame_Shift_Del	T	-	p.Y1269fs
LIHC	TCGA-DD-A1EG-01	TTC21B	ENST00000392695.2,ENST00000536175.1,ENST00000243344.7	chr2	166740303:166740528:166744788:166744984:166746988:166747150,	166744789	166744984	166744868	166744868	Frame_Shift_Del	T	-	p.N1127fs
LIHC	TCGA-DD-A1EG-01	TTC21B	ENST00000243344.7	chr2	166764187:166764294:166767836:166767975:166769023:166769134,	166767837	166767975	166767868	166767868	Frame_Shift_Del	T	-	p.K810fs
LIHC	TCGA-DD-A1EG-01	TTC21B	ENST00000464374.1,ENST00000243344.7	chr2	166802033:166802200:166805903:166806014:166806104:166806234,	166805904	166806014	166805919	166805919	Frame_Shift_Del	T	-	p.M83fs
LIHC	TCGA-DD-A1EG-01	TTC21B	ENST00000464374.1,ENST00000243344.7	chr2	166802033:166802200:166805903:166806014:166806104:166806234,	166805904	166806014	166806009	166806009	Frame_Shift_Del	T	-	p.T53fs
LIHC	TCGA-DD-A1EG-01	SCN9A	ENST00000375387.4,ENST00000454569.1,ENST00000452182.1	chr2	167159599:167159812:167160540:167160632:167162301:167162430,	167160541	167160632	167160559	167160559	Frame_Shift_Del	T	-	p.T225fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099328	168099328	Frame_Shift_Del	C	-	p.P476fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099958	168099958	Frame_Shift_Del	G	-	p.G687fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100394	168100394	Frame_Shift_Del	A	-	p.E831fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100461	168100461	Frame_Shift_Del	A	-	p.L853fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100537	168100537	Frame_Shift_Del	T	-	p.F879fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102380	168102380	Frame_Shift_Del	T	-	p.L1493fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104691	168104691	Frame_Shift_Del	A	-	p.L2263fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105292	168105292	Frame_Shift_Del	A	-	p.K2465fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105868	168105868	Frame_Shift_Del	A	-	p.K2657fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106033	168106033	Frame_Shift_Del	A	-	p.K2711fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106677	168106677	Frame_Shift_Del	T	-	p.S2925fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107540	168107540	Frame_Shift_Del	A	-	p.E3213fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168108238	168108238	Frame_Shift_Del	A	-	p.K3446fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168108299	168108299	Frame_Shift_Del	T	-	p.I3466fs
LIHC	TCGA-DD-A1EG-01	STK39	ENST00000355999.4	chr2	168986050:168986116:168986219:168986268:168994597:168994731,	168986220	168986268	168986244	168986244	Frame_Shift_Del	T	-	p.K333fs
LIHC	TCGA-DD-A1EG-01	CERS6	ENST00000305747.6	chr2	169574381:169574488:169622101:169622258:169626019:169631644,	169622102	169622258	169622226	169622226	Frame_Shift_Del	A	-	p.K324fs
LIHC	TCGA-DD-A1EG-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
LIHC	TCGA-DD-A1EG-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699602	169699602	Frame_Shift_Del	A	-	p.E202fs
LIHC	TCGA-DD-A1EG-01	BBS5	ENST00000295240.3,ENST00000554017.1	chr2	170350250:170350346:170354136:170354199:170355995:170356130,	170354137	170354199	170354160	170354160	Frame_Shift_Del	A	-	p.S214fs
LIHC	TCGA-DD-A1EG-01	PPIG	ENST00000260970.3,ENST00000530152.1,ENST00000462903.1,ENST00000414307.1,ENST00000448752.2	chr2	170460696:170460771:170462548:170462656:170463613:170463658,	170462549	170462656	170462625	170462625	Frame_Shift_Del	T	-	p.D71fs
LIHC	TCGA-DD-A1EG-01	PPIG	ENST00000417938.2	chr2	170460696:170460771:170462612:170462656:170463613:170463658,	170462613	170462656	170462625	170462625	Frame_Shift_Del	T	-	p.D71fs
LIHC	TCGA-DD-A1EG-01	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170591627	170591627	Frame_Shift_Del	T	-	p.F35fs
LIHC	TCGA-DD-A1EG-01	SSB	ENST00000260956.4,ENST00000409333.1	chr2	170666792:170666933:170667367:170667554:170667692:170667833,	170667368	170667554	170667489	170667489	Frame_Shift_Del	A	-	p.E311fs
LIHC	TCGA-DD-A1EG-01	UBR3	ENST00000430321.1,ENST00000392631.1,ENST00000474426.1,ENST00000272793.5,ENST00000439681.1,ENST00000392632.2,ENST00000418381.1,ENST00000444475.1	chr2	170929937:170930117:170936323:170936533:170937054:170937194,	170936324	170936533	170936394	170936394	Frame_Shift_Del	T	-	p.I1757fs
LIHC	TCGA-DD-A1EG-01	MYO3B	ENST00000442690.1,ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171055761:171055901:171056659:171056794:171070888:171070993,	171056660	171056794	171056738	171056738	Frame_Shift_Del	G	-	p.G98fs
LIHC	TCGA-DD-A1EG-01	GAD1	ENST00000358196.3,ENST00000493875.1	chr2	171693302:171693393:171700554:171700667:171702015:171702131,	171700555	171700667	171700658	171700658	Frame_Shift_Del	T	-	p.F248fs
LIHC	TCGA-DD-A1EG-01	TLK1	ENST00000409443.2,ENST00000359766.3	chr2	171871360:171871458:171884848:171884915:171902683:171902872,171879381:171879639:171884848:171884915:171902683:171902872,	171884849	171884915	171884873	171884873	Frame_Shift_Del	T	-	p.K356fs
LIHC	TCGA-DD-A1EG-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000413010.1,ENST00000409443.2,ENST00000360843.3,ENST00000431350.2	chr2	171917590:171917666:171939290:171939362:171974248:171974367,	171939291	171939362	171939310	171939310	Frame_Shift_Del	A	-	p.L56fs
LIHC	TCGA-DD-A1EG-01	METTL8	ENST00000375258.4,ENST00000483284.1,ENST00000438609.1,ENST00000460188.1	chr2	172182350:172182416:172182551:172182658:172187068:172187126,	172182552	172182658	172182611	172182611	Frame_Shift_Del	C	-	p.G303fs
LIHC	TCGA-DD-A1EG-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195839	172195839	Frame_Shift_Del	T	-	p.N154fs
LIHC	TCGA-DD-A1EG-01	METTL8	ENST00000375258.4,ENST00000453846.1,ENST00000442778.1,ENST00000442541.1,ENST00000392599.2,ENST00000392604.2	chr2	172196050:172196064:172216931:172217023:172291183:172291290,172196050:172196064:172216931:172217023:172271112:172271236,172196050:172196064:172216931:172217023:172248552:172248707,	172216932	172217023	172216975	172216975	Frame_Shift_Del	T	-	p.K64fs
LIHC	TCGA-DD-A1EG-01	DCAF17	ENST00000539783.1	chr2	172333369:172333460:172334496:172334580:172336547:172336703,172325486:172325540:172334496:172334580:172336547:172336703,	172334497	172334580	172334538	172334538	Frame_Shift_Del	A	-	p.V408fs
LIHC	TCGA-DD-A1EG-01	CYBRD1	ENST00000321348.4	chr2	172379020:172379248:172398094:172398303:172407487:172407650,172379020:172379248:172398094:172398303:172409855:172410010,	172398095	172398303	172398127	172398127	Frame_Shift_Del	A	-	p.K76fs
LIHC	TCGA-DD-A1EG-01	CYBRD1	ENST00000409484.1,ENST00000321348.4,ENST00000445146.1	chr2	172379020:172379248:172409855:172410010:172411033:172411117,172398094:172398303:172409855:172410010:172411033:172411117,	172409856	172410010	172409867	172409867	Frame_Shift_Del	T	-	p.G138fs
LIHC	TCGA-DD-A1EG-01	SLC25A12	ENST00000422440.2,ENST00000263812.4,ENST00000485880.1,ENST00000392592.4	chr2	172671630:172671712:172683307:172683392:172690472:172690566,	172683308	172683392	172683343	172683343	Frame_Shift_Del	C	-	p.A299fs
LIHC	TCGA-DD-A1EG-01	HAT1	ENST00000412731.1,ENST00000392584.1	chr2	172803227:172803303:172809398:172809519:172821858:172822038,172782046:172782151:172809398:172809519:172821858:172822038,	172809399	172809519	172809401	172809401	Frame_Shift_Del	A	-	p.E64fs
LIHC	TCGA-DD-A1EG-01	HAT1	ENST00000457761.2,ENST00000412731.1,ENST00000392584.1,ENST00000494601.1,ENST00000264108.4	chr2	172822307:172822429:172822929:172823034:172823363:172823470,	172822930	172823034	172822937	172822937	Frame_Shift_Del	A	-	p.K207fs
LIHC	TCGA-DD-A1EG-01	METAP1D	ENST00000493035.1	chr2	172864861:172864916:172926225:172926383:172928438:172928478,	172926226	172926383	172926306	172926306	Frame_Shift_Del	T	-	p.F42fs
LIHC	TCGA-DD-A1EG-01	METAP1D	ENST00000315796.4	chr2	172943942:172943990:172944855:172944934:172945055:172947158,	172944856	172944934	172944877	172944877	Frame_Shift_Del	C	-	p.S291fs
LIHC	TCGA-DD-A1EG-01	PDK1	ENST00000466437.1,ENST00000543905.1,ENST00000282077.3,ENST00000410055.1,ENST00000392571.2,ENST00000544863.1	chr2	173435453:173435552:173451005:173451116:173457662:173457776,	173451006	173451116	173451039	173451039	Frame_Shift_Del	A	-	p.K327fs
LIHC	TCGA-DD-A1EG-01	RAPGEF4	ENST00000538974.1,ENST00000540783.1,ENST00000397085.3,ENST00000397081.3,ENST00000535187.1,ENST00000539331.1,ENST00000264111.6,ENST00000397087.3	chr2	173891808:173891987:173894891:173894982:173898641:173898692,	173894892	173894982	173894920	173894920	Frame_Shift_Del	T	-	p.F863fs
LIHC	TCGA-DD-A1EG-01	SP3	ENST00000418194.2,ENST00000416195.1,ENST00000455789.2,ENST00000310015.6	chr2	174773259:174774985:174777797:174777994:174783320:174783513,	174777798	174777994	174777960	174777960	Frame_Shift_Del	A	-	p.C623fs
LIHC	TCGA-DD-A1EG-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174820108	174820108	Frame_Shift_Del	A	-	p.S378fs
LIHC	TCGA-DD-A1EG-01	OLA1	ENST00000428402.2	chr2	174946737:174946792:174987907:174988005:174988322:174988398,174940136:174940255:174987907:174988005:174988322:174988398,	174987908	174988005	174987914	174987914	Frame_Shift_Del	T	-	p.N241fs
LIHC	TCGA-DD-A1EG-01	SCRN3	ENST00000272732.6,ENST00000458563.1,ENST00000548031.1,ENST00000409673.3,ENST00000490927.1	chr2	175264649:175264831:175265717:175265917:175268830:175268918,	175265718	175265917	175265765	175265765	Frame_Shift_Del	T	-	p.I130fs
LIHC	TCGA-DD-A1EG-01	SCRN3	ENST00000272732.6,ENST00000458563.1,ENST00000548031.1,ENST00000409673.3,ENST00000490927.1	chr2	175264649:175264831:175265717:175265917:175268830:175268918,	175265718	175265917	175265780	175265780	Frame_Shift_Del	A	-	p.E135fs
LIHC	TCGA-DD-A1EG-01	SCRN3	ENST00000475928.1	chr2	175275071:175275231:175289202:175289377:175292440:175292592,	175289203	175289377	175289337	175289337	Frame_Shift_Del	A	-	p.Q351fs
LIHC	TCGA-DD-A1EG-01	GPR155	ENST00000295500.4,ENST00000392552.2,ENST00000392551.2	chr2	175311338:175311475:175318464:175318569:175324605:175324816,	175318465	175318569	175318513	175318513	Frame_Shift_Del	T	-	p.I610fs
LIHC	TCGA-DD-A1EG-01	CHN1	ENST00000490654.1,ENST00000409900.3	chr2	175689161:175689246:175742567:175742856:175779785:175779899,175711641:175711685:175742567:175742856:175779785:175779899,	175742568	175742856	175742793	175742793	Frame_Shift_Del	T	-	p.K108fs
LIHC	TCGA-DD-A1EG-01	CHN1	ENST00000409156.3,ENST00000409900.3,ENST00000488080.1	chr2	175783261:175783293:175809615:175809671:175816891:175816930,	175809616	175809671	175809647	175809647	Frame_Shift_Del	G	-	p.P28fs
LIHC	TCGA-DD-A1EG-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177034272	177034272	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-DD-A1EG-01	AGPS	ENST00000264167.4	chr2	178326620:178326746:178333143:178333252:178346786:178346914,	178333144	178333252	178333184	178333184	Frame_Shift_Del	A	-	p.E346fs
LIHC	TCGA-DD-A1EG-01	OSBPL6	ENST00000392505.2,ENST00000315022.2	chr2	179204398:179204491:179209012:179209087:179213950:179214116,	179209013	179209087	179209016	179209016	Frame_Shift_Del	G	-	p.G331fs
LIHC	TCGA-DD-A1EG-01	OSBPL6	ENST00000359685.3,ENST00000409045.3,ENST00000392505.2,ENST00000409631.1,ENST00000190611.4,ENST00000315022.2	chr2	179257138:179257265:179259039:179259162:179260177:179260348,	179259040	179259162	179259155	179259155	Frame_Shift_Del	T	-	p.F898fs
LIHC	TCGA-DD-A1EG-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306385	179306385	Frame_Shift_Del	T	-	p.K187fs
LIHC	TCGA-DD-A1EG-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306402	179306402	Frame_Shift_Del	T	-	p.R182fs
LIHC	TCGA-DD-A1EG-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604459	179604459	Frame_Shift_Del	T	-	p.T4501fs
LIHC	TCGA-DD-A1EG-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604681	179604681	Frame_Shift_Del	C	-	p.V4427fs
LIHC	TCGA-DD-A1EG-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179604689	179604689	Frame_Shift_Del	T	-	p.K4424fs
LIHC	TCGA-DD-A1EG-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605709	179605709	Frame_Shift_Del	A	-	p.L4084fs
LIHC	TCGA-DD-A1EG-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606209	179606209	Frame_Shift_Del	T	-	p.K3917fs
LIHC	TCGA-DD-A1EG-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606235	179606235	Frame_Shift_Del	T	-	p.I3909fs
LIHC	TCGA-DD-A1EG-01	TTN	ENST00000342175.6	chr2	179617850:179617907:179620948:179621524:179623710:179623899,	179620949	179621524	179621188	179621188	Frame_Shift_Del	T	-	p.K3672fs
LIHC	TCGA-DD-A1EG-01	ZNF385B	ENST00000409343.1,ENST00000409692.1,ENST00000466398.1,ENST00000410066.1,ENST00000336917.5,ENST00000457304.1	chr2	180310334:180310455:180311251:180311497:180347998:180348161,	180311252	180311497	180311328	180311328	Frame_Shift_Del	T	-	p.K280fs
LIHC	TCGA-DD-A1EG-01	ZNF385B	ENST00000409343.1,ENST00000409692.1,ENST00000466398.1,ENST00000410066.1,ENST00000336917.5,ENST00000457304.1	chr2	180310334:180310455:180311251:180311497:180347998:180348161,	180311252	180311497	180311478	180311478	Frame_Shift_Del	T	-	p.K230fs
LIHC	TCGA-DD-A1EG-01	ZNF385B	ENST00000409343.1,ENST00000409692.1,ENST00000410066.1,ENST00000336917.5,ENST00000457304.1	chr2	180348046:180348161:180383254:180383365:180409553:180409696,	180383255	180383365	180383300	180383300	Frame_Shift_Del	T	-	p.K154fs
LIHC	TCGA-DD-A1EG-01	ZNF385B	ENST00000409343.1,ENST00000409692.1,ENST00000410066.1,ENST00000336917.5,ENST00000457304.1	chr2	180348046:180348161:180383254:180383365:180409553:180409696,	180383255	180383365	180383318	180383318	Frame_Shift_Del	G	-	p.S148fs
LIHC	TCGA-DD-A1EG-01	UBE2E3	ENST00000602888.1,ENST00000602959.1,ENST00000410062.4,ENST00000602710.1,ENST00000602837.1,ENST00000392415.2,ENST00000602291.1	chr2	181922419:181922552:181925391:181925539:181927517:181927576,	181925392	181925539	181925535	181925535	Frame_Shift_Del	C	-	p.N174fs
LIHC	TCGA-DD-A1EG-01	PDE1A	ENST00000536095.1,ENST00000351439.5,ENST00000410103.1,ENST00000358139.2,ENST00000331935.6,ENST00000409365.1,ENST00000346717.4,ENST00000435564.1,ENST00000456212.1	chr2	183066414:183066516:183070666:183070792:183088590:183088691,	183070667	183070792	183070688	183070688	Frame_Shift_Del	T	-	p.N310fs
LIHC	TCGA-DD-A1EG-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183826886:183827006:183829403:183829536:183831943:183832089,	183829404	183829536	183829532	183829532	Frame_Shift_Del	A	-	p.Y551fs
LIHC	TCGA-DD-A1EG-01	NUP35	ENST00000409798.1,ENST00000479162.1,ENST00000374930.3,ENST00000295119.4,ENST00000446612.1	chr2	183993014:183993185:183995145:183995273:183998293:183998351,	183995146	183995273	183995181	183995181	Frame_Shift_Del	A	-	p.K83fs
LIHC	TCGA-DD-A1EG-01	NUP35	ENST00000409798.1,ENST00000479162.1,ENST00000374930.3,ENST00000295119.4,ENST00000446612.1	chr2	183993014:183993185:183995145:183995273:183998293:183998351,	183995146	183995273	183995187	183995187	Frame_Shift_Del	A	-	p.K85fs
LIHC	TCGA-DD-A1EG-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670139	186670139	Frame_Shift_Del	A	-	p.Q5458fs
LIHC	TCGA-DD-A1EG-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671157	186671157	Frame_Shift_Del	C	-	p.S5797fs
LIHC	TCGA-DD-A1EG-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671521	186671521	Frame_Shift_Del	A	-	p.K5919fs
LIHC	TCGA-DD-A1EG-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672782	186672782	Frame_Shift_Del	A	-	p.E6339fs
LIHC	TCGA-DD-A1EG-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673142	186673142	Frame_Shift_Del	A	-	p.E6459fs
LIHC	TCGA-DD-A1EG-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673671	186673671	Frame_Shift_Del	A	-	p.I6635fs
LIHC	TCGA-DD-A1EG-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673694	186673694	Frame_Shift_Del	T	-	p.L6643fs
LIHC	TCGA-DD-A1EG-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000261023.3	chr2	187514566:187514612:187516708:187516816:187519376:187519435,	187516709	187516816	187516776	187516776	Frame_Shift_Del	A	-	p.K489fs
LIHC	TCGA-DD-A1EG-01	ZSWIM2	ENST00000295131.2	chr2	187703685:187703896:187709443:187709484:187712445:187712522,	187709444	187709484	187709469	187709469	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-DD-A1EG-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189859449:189859557:189859771:189859825:189860417:189860516,	189859772	189859825	189859813	189859813	Frame_Shift_Del	C	-	p.I499fs
LIHC	TCGA-DD-A1EG-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189860850:189860904:189861123:189861222:189861890:189861943,	189861124	189861222	189861201	189861201	Frame_Shift_Del	C	-	p.F580fs
LIHC	TCGA-DD-A1EG-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189861123:189861222:189861890:189861944:189862061:189862112,	189861891	189861944	189861927	189861927	Frame_Shift_Del	G	-	p.G601fs
LIHC	TCGA-DD-A1EG-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189864567:189864621:189866122:189866176:189866261:189866315,	189866123	189866176	189866161	189866161	Frame_Shift_Del	C	-	p.G774fs
LIHC	TCGA-DD-A1EG-01	COL5A2	ENST00000374866.3	chr2	189929282:189929381:189929729:189929783:189931115:189931223,	189929730	189929783	189929760	189929760	Frame_Shift_Del	A	-	p.F529fs
LIHC	TCGA-DD-A1EG-01	WDR75	ENST00000436347.1,ENST00000427960.1,ENST00000314761.4	chr2	190320045:190320170:190322036:190322107:190323478:190323598,	190322037	190322107	190322081	190322081	Frame_Shift_Del	T	-	p.Y181fs
LIHC	TCGA-DD-A1EG-01	SLC40A1	ENST00000427241.1,ENST00000261024.2	chr2	190430238:190430325:190436440:190436567:190437571:190437687,	190436441	190436567	190436521	190436521	Frame_Shift_Del	A	-	p.L145fs
LIHC	TCGA-DD-A1EG-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190531266	190531266	Frame_Shift_Del	T	-	p.D136fs
LIHC	TCGA-DD-A1EG-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2,ENST00000433782.2	chr2	190561026:190561095:190569748:190569950:190571663:190571868,	190569749	190569950	190569800	190569800	Frame_Shift_Del	T	-	p.V587fs
LIHC	TCGA-DD-A1EG-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2,ENST00000433782.2	chr2	190561026:190561095:190569748:190569950:190571663:190571868,	190569749	190569950	190569839	190569839	Frame_Shift_Del	A	-	p.E600fs
LIHC	TCGA-DD-A1EG-01	ANKAR	ENST00000441800.1,ENST00000281412.6	chr2	190592581:190592823:190592992:190593146:190602408:190602567,	190592993	190593146	190593066	190593066	Frame_Shift_Del	A	-	p.Q984fs
LIHC	TCGA-DD-A1EG-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2	chr2	190606067:190606177:190608000:190608200:190609467:190609514,	190608001	190608200	190608148	190608148	Frame_Shift_Del	T	-	p.F1320fs
LIHC	TCGA-DD-A1EG-01	PMS1	ENST00000424307.1,ENST00000441310.2,ENST00000447232.2	chr2	190670377:190670480:190682742:190682906:190708689:190708806,	190682743	190682906	190682831	190682831	Frame_Shift_Del	A	-	p.I169fs
LIHC	TCGA-DD-A1EG-01	HIBCH	ENST00000392332.3,ENST00000409934.1,ENST00000359678.5	chr2	191152311:191152364:191155130:191155211:191159271:191159356,	191155131	191155211	191155166	191155166	Frame_Shift_Del	A	-	p.F118fs
LIHC	TCGA-DD-A1EG-01	INPP1	ENST00000422454.1	chr2	191224764:191225032:191227352:191227413:191231420:191231456,191224764:191225032:191227352:191227413:191229838:191229878,	191227353	191227413	191227411	191227411	Frame_Shift_Del	G	-	p.W88fs
LIHC	TCGA-DD-A1EG-01	GLS	ENST00000409428.1,ENST00000320717.3	chr2	191819309:191819386:191819480:191819544:191827555:191827714,	191819481	191819544	191819519	191819519	Frame_Shift_Del	A	-	p.K610fs
LIHC	TCGA-DD-A1EG-01	STAT4	ENST00000392320.2,ENST00000495849.1,ENST00000358470.4	chr2	191929532:191929684:191931155:191931241:191934418:191934497,	191931156	191931241	191931199	191931199	Frame_Shift_Del	A	-	p.L196fs
LIHC	TCGA-DD-A1EG-01	MYO1B	ENST00000339514.4,ENST00000392318.3	chr2	192110114:192110352:192141612:192141756:192160836:192160952,	192141613	192141756	192141640	192141640	Frame_Shift_Del	A	-	p.K7fs
LIHC	TCGA-DD-A1EG-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545416	196545416	Frame_Shift_Del	C	-	p.T217fs
LIHC	TCGA-DD-A1EG-01	DNAH7	ENST00000312428.6	chr2	196791149:196791290:196799314:196799513:196801322:196801516,	196799315	196799513	196799465	196799465	Frame_Shift_Del	T	-	p.E1107fs
LIHC	TCGA-DD-A1EG-01	DNAH7	ENST00000312428.6	chr2	196851789:196851917:196852680:196852953:196865427:196865607,	196852681	196852953	196852808	196852808	Frame_Shift_Del	A	-	p.L500fs
LIHC	TCGA-DD-A1EG-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197084762:197084877:197085518:197085665:197086934:197087064,	197085519	197085665	197085625	197085625	Frame_Shift_Del	G	-	p.P1396fs
LIHC	TCGA-DD-A1EG-01	CCDC150	ENST00000431807.2,ENST00000272831.7,ENST00000469429.1	chr2	197565832:197565904:197576868:197576976:197583226:197583355,	197576869	197576976	197576915	197576915	Frame_Shift_Del	C	-	p.T581fs
LIHC	TCGA-DD-A1EG-01	ANKRD44	ENST00000424317.1,ENST00000282272.8,ENST00000448801.1,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197863060:197863143:197863630:197863776:197865142:197865226,	197863631	197863776	197863769	197863769	Frame_Shift_Del	G	-	p.L818fs
LIHC	TCGA-DD-A1EG-01	ANKRD44	ENST00000422886.1,ENST00000409153.1,ENST00000424317.1,ENST00000282272.8,ENST00000539527.1,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197943426:197943538:197946368:197946449:197948092:197948233,	197946369	197946449	197946381	197946381	Frame_Shift_Del	T	-	p.K484fs
LIHC	TCGA-DD-A1EG-01	ANKRD44	ENST00000409153.1,ENST00000463879.1,ENST00000282272.8,ENST00000443014.1,ENST00000409919.1,ENST00000450567.1,ENST00000328737.2	chr2	198001315:198001386:198011750:198011829:198051746:198051830,	198011751	198011829	198011791	198011791	Frame_Shift_Del	A	-	p.F25fs
LIHC	TCGA-DD-A1EG-01	SF3B1	ENST00000335508.6,ENST00000424674.1	chr2	198260779:198261052:198262708:198262840:198263184:198263305,	198262709	198262840	198262795	198262795	Frame_Shift_Del	A	-	p.F1060fs
LIHC	TCGA-DD-A1EG-01	SF3B1	ENST00000335508.6	chr2	198273092:198273305:198274493:198274731:198281464:198281635,	198274494	198274731	198274503	198274503	Frame_Shift_Del	T	-	p.T299fs
LIHC	TCGA-DD-A1EG-01	SF3B1	ENST00000335508.6,ENST00000470268.1	chr2	198274506:198274731:198281464:198281635:198283232:198283312,	198281465	198281635	198281585	198281585	Frame_Shift_Del	T	-	p.K182fs
LIHC	TCGA-DD-A1EG-01	HSPD1	ENST00000388968.3,ENST00000345042.2	chr2	198351309:198351922:198352581:198352760:198353040:198353215,	198352582	198352760	198352603	198352603	Frame_Shift_Del	T	-	p.K516fs
LIHC	TCGA-DD-A1EG-01	SATB2	ENST00000457245.1,ENST00000417098.1,ENST00000260926.5	chr2	200246416:200246543:200298060:200298237:200320591:200320819,	200298061	200298237	200298097	200298097	Frame_Shift_Del	G	-	p.L104fs
LIHC	TCGA-DD-A1EG-01	SPATS2L	ENST00000438761.1,ENST00000409397.2,ENST00000360760.5	chr2	201283972:201284219:201305371:201305507:201324491:201324550,	201305372	201305507	201305414	201305414	Frame_Shift_Del	C	-	p.T232fs
LIHC	TCGA-DD-A1EG-01	CLK1	ENST00000432425.1,ENST00000473565.1,ENST00000409403.2	chr2	201725960:201726189:201726424:201726585:201729286:201729379,	201726425	201726585	201726435	201726435	Frame_Shift_Del	T	-	p.M93fs
LIHC	TCGA-DD-A1EG-01	NIF3L1	ENST00000416651.1,ENST00000359683.4,ENST00000409357.1,ENST00000409020.1	chr2	201759986:201760113:201761798:201761937:201764107:201764191,	201761799	201761937	201761822	201761822	Frame_Shift_Del	G	-	p.M250fs
LIHC	TCGA-DD-A1EG-01	CFLAR	ENST00000309955.3,ENST00000423241.2,ENST00000342795.5,ENST00000340870.5,ENST00000479953.2,ENST00000462763.1,ENST00000355558.4,ENST00000474842.1,ENST00000457277.1,ENST00000443227.1	chr2	202005079:202005162:202010100:202010155:202013725:202013775,	202010101	202010155	202010110	202010110	Frame_Shift_Del	G	-	p.G206fs
LIHC	TCGA-DD-A1EG-01	CFLAR	ENST00000309955.3,ENST00000341582.6,ENST00000423241.2,ENST00000474842.1,ENST00000443227.1	chr2	202014476:202014558:202025154:202025665:202027718:202027803,202014476:202014558:202025154:202025665:202028557:202028696,	202025155	202025665	202025354	202025354	Frame_Shift_Del	C	-	p.L331fs
LIHC	TCGA-DD-A1EG-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131271	202131271	Frame_Shift_Del	C	-	p.S80fs
LIHC	TCGA-DD-A1EG-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131271	202131271	Frame_Shift_Del	C	-	p.S80fs
LIHC	TCGA-DD-A1EG-01	CASP8	ENST00000339403.6	chr2	202139611:202139676:202141549:202141827:202149538:202150040,	202141550	202141827	202141587	202141587	Frame_Shift_Del	G	-	p.R292fs
LIHC	TCGA-DD-A1EG-01	CASP8	ENST00000432109.2,ENST00000323492.7,ENST00000358485.4,ENST00000264275.5,ENST00000392263.2	chr2	202137620:202137665:202141549:202141691:202149538:202150040,202137360:202137499:202141549:202141691:202149538:202149673,202139611:202139676:202141549:202141691:202149538:202150040,	202141550	202141691	202141587	202141587	Frame_Shift_Del	G	-	p.R292fs
LIHC	TCGA-DD-A1EG-01	TRAK2	ENST00000430254.1,ENST00000332624.3	chr2	202264099:202264216:202265740:202265817:202272125:202272320,	202265741	202265817	202265782	202265782	Frame_Shift_Del	T	-	p.T108fs
LIHC	TCGA-DD-A1EG-01	STRADB	ENST00000194530.3,ENST00000392249.2	chr2	202319468:202319575:202323506:202323587:202337677:202337799,202319468:202319575:202323506:202323587:202334675:202334775,	202323507	202323587	202323553	202323553	Frame_Shift_Del	A	-	p.E20fs
LIHC	TCGA-DD-A1EG-01	TMEM237	ENST00000471318.1	chr2	202490748:202490870:202492798:202492872:202493952:202494143,	202492799	202492872	202492856	202492856	Frame_Shift_Del	T	-	p.I288fs
LIHC	TCGA-DD-A1EG-01	ALS2	ENST00000264276.6	chr2	202580394:202580562:202582799:202582933:202587765:202587843,	202582800	202582933	202582914	202582914	Frame_Shift_Del	T	-	p.N1241fs
LIHC	TCGA-DD-A1EG-01	SUMO1	ENST00000409627.2,ENST00000392246.2,ENST00000409498.2,ENST00000469034.1,ENST00000409368.1,ENST00000392245.1	chr2	203075457:203075529:203079079:203079157:203084754:203084829,	203079080	203079157	203079085	203079085	Frame_Shift_Del	T	-	p.R54fs
LIHC	TCGA-DD-A1EG-01	SUMO1	ENST00000409205.1	chr2	203075457:203075529:203079079:203079152:203084754:203084829,	203079080	203079152	203079085	203079085	Frame_Shift_Del	T	-	p.R54fs
LIHC	TCGA-DD-A1EG-01	NOP58	ENST00000433543.2	chr2	203155847:203155993:203157499:203157626:203160396:203160560,203155847:203155993:203157499:203157626:203162101:203162236,	203157500	203157626	203157546	203157546	Frame_Shift_Del	A	-	p.Q276fs
LIHC	TCGA-DD-A1EG-01	WDR12	ENST00000261015.4	chr2	203747433:203747506:203748331:203748464:203748920:203748963,	203748332	203748464	203748365	203748365	Frame_Shift_Del	A	-	p.L363fs
LIHC	TCGA-DD-A1EG-01	WDR12	ENST00000261015.4	chr2	203757339:203757425:203759303:203759349:203760787:203760942,	203759304	203759349	203759346	203759346	Frame_Shift_Del	A	-	p.C205fs
LIHC	TCGA-DD-A1EG-01	NBEAL1	ENST00000449802.1	chr2	204034469:204034574:204036650:204036746:204037451:204037576,	204036651	204036746	204036694	204036694	Frame_Shift_Del	A	-	p.Q2020fs
LIHC	TCGA-DD-A1EG-01	NBEAL1	ENST00000449802.1	chr2	204034469:204034574:204036650:204036746:204037451:204037576,	204036651	204036746	204036698	204036698	Frame_Shift_Del	A	-	p.I2021fs
LIHC	TCGA-DD-A1EG-01	NBEAL1	ENST00000414576.2,ENST00000434469.1,ENST00000449802.1	chr2	204073359:204073476:204073883:204074045:204075680:204075829,	204073884	204074045	204074029	204074029	Frame_Shift_Del	A	-	p.E2561fs
LIHC	TCGA-DD-A1EG-01	CYP20A1	ENST00000428265.1,ENST00000449301.1,ENST00000463131.1	chr2	204131236:204131404:204143295:204143411:204144781:204144836,	204143296	204143411	204143333	204143333	Frame_Shift_Del	A	-	p.I239fs
LIHC	TCGA-DD-A1EG-01	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204144781:204144836:204150334:204150455:204154487:204154599,	204150335	204150455	204150410	204150410	Frame_Shift_Del	T	-	p.V309fs
LIHC	TCGA-DD-A1EG-01	CTLA4	ENST00000302823.3	chr2	204735308:204735656:204736100:204736210:204737430:204737498,	204736101	204736210	204736114	204736114	Frame_Shift_Del	C	-	p.C157fs
LIHC	TCGA-DD-A1EG-01	CCNYL1	ENST00000295414.3,ENST00000392209.3,ENST00000452312.1	chr2	208591565:208591600:208598670:208598771:208602134:208602170,	208598671	208598771	208598692	208598692	Frame_Shift_Del	A	-	p.K119fs
LIHC	TCGA-DD-A1EG-01	CCNYL1	ENST00000339882.5,ENST00000295414.3,ENST00000392209.3,ENST00000452312.1,ENST00000420321.1	chr2	208606997:208607066:208611770:208611937:208615680:208615838,	208611771	208611937	208611777	208611777	Frame_Shift_Del	T	-	p.L216fs
LIHC	TCGA-DD-A1EG-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208841869	208841869	Frame_Shift_Del	G	-	p.P351fs
LIHC	TCGA-DD-A1EG-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208842277	208842277	Frame_Shift_Del	T	-	p.K215fs
LIHC	TCGA-DD-A1EG-01	C2orf80	ENST00000341287.4,ENST00000451346.1	chr2	209030201:209030539:209035668:209035787:209036711:209036799,	209035669	209035787	209035754	209035754	Frame_Shift_Del	T	-	p.N163fs
LIHC	TCGA-DD-A1EG-01	IDH1	ENST00000446179.1,ENST00000345146.2,ENST00000415913.1	chr2	209108150:209108328:209110042:209110148:209113092:209113384,	209110043	209110148	209110072	209110072	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-DD-A1EG-01	IDH1	ENST00000446179.1,ENST00000345146.2,ENST00000415913.1	chr2	209108150:209108328:209110042:209110148:209113092:209113384,	209110043	209110148	209110110	209110110	Frame_Shift_Del	T	-	p.K151fs
LIHC	TCGA-DD-A1EG-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4,ENST00000452564.1	chr2	209182590:209182665:209184975:209185083:209188865:209189006,	209184976	209185083	209184996	209184996	Frame_Shift_Del	C	-	p.N701fs
LIHC	TCGA-DD-A1EG-01	MAP2	ENST00000475600.1	chr2	210561037:210561074:210561265:210561472:210565000:210565062,	210561266	210561472	210561414	210561414	Frame_Shift_Del	A	-	p.R1443fs
LIHC	TCGA-DD-A1EG-01	UNC80	ENST00000439458.1,ENST00000489023.1,ENST00000272845.6	chr2	210810570:210810667:210818823:210818994:210822367:210822460,	210818824	210818994	210818967	210818967	Frame_Shift_Del	T	-	p.L2412fs
LIHC	TCGA-DD-A1EG-01	KANSL1L	ENST00000281772.9	chr2	210896144:210896270:210905143:210905251:210908662:210908828,	210905144	210905251	210905182	210905182	Frame_Shift_Del	T	-	p.N664fs
LIHC	TCGA-DD-A1EG-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211018866	211018866	Frame_Shift_Del	T	-	p.K147fs
LIHC	TCGA-DD-A1EG-01	IKZF2	ENST00000434687.1,ENST00000374326.3,ENST00000342002.2,ENST00000453575.1,ENST00000374319.4,ENST00000412444.1,ENST00000457361.1,ENST00000374327.4,ENST00000439848.1	chr2	213872083:213872808:213878514:213878658:213886716:213886854,	213878515	213878658	213878605	213878605	Frame_Shift_Del	A	-	p.S256fs
LIHC	TCGA-DD-A1EG-01	SPAG16	ENST00000272898.7,ENST00000374309.3,ENST00000440779.1,ENST00000331683.5,ENST00000413312.1,ENST00000447990.1,ENST00000406979.2	chr2	214181942:214182080:214204886:214204994:214228799:214228869,214181942:214182080:214204886:214204994:214215251:214215369,	214204887	214204994	214204964	214204964	Frame_Shift_Del	A	-	p.E174fs
LIHC	TCGA-DD-A1EG-01	SPAG16	ENST00000374309.3,ENST00000331683.5,ENST00000452556.1,ENST00000406979.2	chr2	214228799:214228869:214239733:214239843:214354686:214354814,	214239734	214239843	214239749	214239749	Frame_Shift_Del	A	-	p.E283fs
LIHC	TCGA-DD-A1EG-01	VWC2L	ENST00000312504.5	chr2	215278837:215279307:215301352:215301482:215440395:215443683,	215301353	215301482	215301396	215301396	Frame_Shift_Del	T	-	p.V145fs
LIHC	TCGA-DD-A1EG-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645635	215645635	Frame_Shift_Del	T	-	p.K321fs
LIHC	TCGA-DD-A1EG-01	ABCA12	ENST00000272895.7,ENST00000389661.4	chr2	215843039:215843190:215843527:215843764:215845206:215845367,	215843528	215843764	215843664	215843664	Frame_Shift_Del	C	-	p.G1614fs
LIHC	TCGA-DD-A1EG-01	ABCA12	ENST00000272895.7,ENST00000389661.4	chr2	215843039:215843190:215843527:215843764:215845206:215845367,	215843528	215843764	215843751	215843751	Frame_Shift_Del	T	-	p.N1585fs
LIHC	TCGA-DD-A1EG-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000426233.1,ENST00000540518.1,ENST00000236959.9	chr2	216209501:216209594:216211481:216211664:216213816:216213972,	216211482	216211664	216211639	216211639	Frame_Shift_Del	A	-	p.Q492fs
LIHC	TCGA-DD-A1EG-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216229601:216229708:216230227:216230353:216232585:216232750,	216230228	216230353	216230250	216230250	Frame_Shift_Del	T	-	p.K2374fs
LIHC	TCGA-DD-A1EG-01	FN1	ENST00000421182.1,ENST00000446046.1	chr2	216236631:216236738:216236831:216237023:216238044:216238133,	216236832	216237023	216237011	216237011	Frame_Shift_Del	G	-	p.P2112fs
LIHC	TCGA-DD-A1EG-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000323926.6,ENST00000336916.4	chr2	216236631:216236738:216236831:216237098:216238044:216238133,	216236832	216237098	216237011	216237011	Frame_Shift_Del	G	-	p.P2112fs
LIHC	TCGA-DD-A1EG-01	FN1	ENST00000432072.2,ENST00000323926.6,ENST00000354785.4	chr2	216256354:216256537:216257653:216257926:216259250:216259442,	216257654	216257926	216257742	216257742	Frame_Shift_Del	C	-	p.G1327fs
LIHC	TCGA-DD-A1EG-01	PECR	ENST00000461330.1,ENST00000265322.7	chr2	216913985:216914096:216916171:216916268:216923617:216923699,	216916172	216916268	216916215	216916215	Frame_Shift_Del	A	-	p.L187fs
LIHC	TCGA-DD-A1EG-01	XRCC5	ENST00000460284.1,ENST00000392133.3,ENST00000392132.2	chr2	217054947:217055057:217057361:217057458:217059641:217059709,	217057362	217057458	217057430	217057430	Frame_Shift_Del	A	-	p.L671fs
LIHC	TCGA-DD-A1EG-01	XRCC5	ENST00000460284.1,ENST00000392133.3,ENST00000392132.2	chr2	217057361:217057458:217059641:217059709:217069044:217069119,	217059642	217059709	217059704	217059704	Frame_Shift_Del	A	-	p.K703fs
LIHC	TCGA-DD-A1EG-01	TNS1	ENST00000430930.1,ENST00000490566.1,ENST00000419504.1,ENST00000446688.1,ENST00000171887.4	chr2	218673325:218673394:218674545:218674714:218674970:218675027,	218674546	218674714	218674617	218674617	Frame_Shift_Del	G	-	p.P1630fs
LIHC	TCGA-DD-A1EG-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218712775	218712775	Frame_Shift_Del	G	-	p.P697fs
LIHC	TCGA-DD-A1EG-01	TNS1	ENST00000430930.1,ENST00000310858.6,ENST00000446903.1,ENST00000413554.1,ENST00000419504.1,ENST00000171887.4,ENST00000492338.2	chr2	218757670:218757735:218758161:218758284:218759728:218759779,	218758162	218758284	218758204	218758204	Frame_Shift_Del	C	-	p.W100fs
LIHC	TCGA-DD-A1EG-01	ARPC2	ENST00000478612.1,ENST00000477992.1,ENST00000295685.10,ENST00000315717.5,ENST00000470146.1	chr2	219103441:219103573:219104113:219104207:219110142:219110180,	219104114	219104207	219104127	219104127	Frame_Shift_Del	A	-	p.K158fs
LIHC	TCGA-DD-A1EG-01	VIL1	ENST00000454069.1	chr2	219288999:219289074:219290337:219290522:219292687:219292796,	219290338	219290522	219290391	219290391	Frame_Shift_Del	G	-	p.Q68fs
LIHC	TCGA-DD-A1EG-01	VIL1	ENST00000440053.1,ENST00000248444.5	chr2	219288999:219289074:219290337:219290534:219292687:219292796,	219290338	219290534	219290391	219290391	Frame_Shift_Del	G	-	p.Q68fs
LIHC	TCGA-DD-A1EG-01	USP37	ENST00000454775.1	chr2	219418275:219418447:219423220:219423440:219425542:219425606,	219423221	219423440	219423323	219423323	Frame_Shift_Del	C	-	p.G18fs
LIHC	TCGA-DD-A1EG-01	USP37	ENST00000258399.3,ENST00000418019.1,ENST00000338465.5	chr2	219418275:219418447:219423220:219423400:219425542:219425606,	219423221	219423400	219423323	219423323	Frame_Shift_Del	C	-	p.G18fs
LIHC	TCGA-DD-A1EG-01	PLCD4	ENST00000417849.1,ENST00000450993.2	chr2	219497017:219497035:219498327:219498484:219498827:219498944,	219498328	219498484	219498452	219498452	Frame_Shift_Del	A	-	p.E525fs
LIHC	TCGA-DD-A1EG-01	STK36	ENST00000486644.1,ENST00000392105.3,ENST00000492486.1,ENST00000295709.3,ENST00000440309.1,ENST00000392106.2	chr2	219558445:219558544:219558617:219558706:219558986:219559001,	219558618	219558706	219558632	219558632	Frame_Shift_Del	T	-	p.D754fs
LIHC	TCGA-DD-A1EG-01	STK36	ENST00000462031.1,ENST00000392105.3,ENST00000295709.3,ENST00000440309.1,ENST00000392106.2	chr2	219562185:219562333:219562576:219562724:219563324:219563424,	219562577	219562724	219562593	219562593	Frame_Shift_Del	T	-	p.F976fs
LIHC	TCGA-DD-A1EG-01	SLC23A3	ENST00000498327.1,ENST00000295738.7,ENST00000455516.2,ENST00000409878.3,ENST00000396775.3	chr2	220027020:220027116:220028109:220028277:220028954:220029060,	220028110	220028277	220028263	220028263	Frame_Shift_Del	C	-	p.V438fs
LIHC	TCGA-DD-A1EG-01	ZFAND2B	ENST00000409206.1,ENST00000289528.5,ENST00000464902.1,ENST00000422255.1,ENST00000475533.1,ENST00000409336.1,ENST00000409097.1,ENST00000409594.1,ENST00000444522.2,ENST00000409217.1	chr2	220072484:220072501:220072608:220072760:220072977:220073070,	220072609	220072760	220072732	220072732	Frame_Shift_Del	G	-	p.G136fs
LIHC	TCGA-DD-A1EG-01	GLB1L	ENST00000295759.7,ENST00000392089.2,ENST00000356283.3,ENST00000497855.1,ENST00000409640.1	chr2	220102233:220102449:220102547:220102679:220102971:220103085,	220102548	220102679	220102626	220102626	Frame_Shift_Del	C	-	p.G465fs
LIHC	TCGA-DD-A1EG-01	TUBA4A	ENST00000462806.1	chr2	220116308:220116435:220116729:220116952:220142535:220142598,220116310:220116435:220116729:220116952:220118577:220118623,	220116730	220116952	220116755	220116755	Frame_Shift_Del	A	-	p.F52fs
LIHC	TCGA-DD-A1EG-01	TMEM198	ENST00000344458.2,ENST00000373883.3	chr2	220409482:220409615:220412227:220412803:220413873:220414076,	220412228	220412803	220412692	220412692	Frame_Shift_Del	C	-	p.P212fs
LIHC	TCGA-DD-A1EG-01	OBSL1	ENST00000265318.4,ENST00000465149.1,ENST00000603926.1,ENST00000289656.3,ENST00000373873.4,ENST00000404537.1,ENST00000373876.1	chr2	220429963:220430236:220431551:220431848:220431994:220432258,	220431552	220431848	220431659	220431659	Frame_Shift_Del	C	-	p.G676fs
LIHC	TCGA-DD-A1EG-01	STK11IP	ENST00000295641.10,ENST00000475396.1,ENST00000456909.1	chr2	220473304:220473510:220473818:220473935:220474084:220474262,	220473819	220473935	220473841	220473841	Frame_Shift_Del	C	-	p.A611fs
LIHC	TCGA-DD-A1EG-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220499992:220500218:220500394:220500613:220501023:220501172,	220500395	220500613	220500469	220500469	Frame_Shift_Del	G	-	p.G684fs
LIHC	TCGA-DD-A1EG-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222291183:222291339:222294677:222294871:222298861:222298969,	222294678	222294871	222294713	222294713	Frame_Shift_Del	G	-	p.P885fs
LIHC	TCGA-DD-A1EG-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222291183:222291339:222294677:222294871:222298861:222298969,	222294678	222294871	222294840	222294840	Frame_Shift_Del	A	-	p.L843fs
LIHC	TCGA-DD-A1EG-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225367708:225367789:225368368:225368539:225370672:225370849,	225368369	225368539	225368388	225368388	Frame_Shift_Del	T	-	p.N453fs
LIHC	TCGA-DD-A1EG-01	DOCK10	ENST00000422684.1,ENST00000409592.3,ENST00000258390.7	chr2	225664878:225664980:225666632:225666757:225668828:225668930,	225666633	225666757	225666683	225666683	Frame_Shift_Del	T	-	p.N1442fs
LIHC	TCGA-DD-A1EG-01	DOCK10	ENST00000409592.3,ENST00000492369.1,ENST00000258390.7	chr2	225750387:225750522:225750779:225750902:225751175:225751243,	225750780	225750902	225750871	225750871	Frame_Shift_Del	C	-	p.G170fs
LIHC	TCGA-DD-A1EG-01	RHBDD1	ENST00000392062.2,ENST00000341329.3	chr2	227729345:227729842:227731901:227732034:227771508:227771597,	227731902	227732034	227731962	227731962	Frame_Shift_Del	T	-	p.I165fs
LIHC	TCGA-DD-A1EG-01	RHBDD1	ENST00000409053.1,ENST00000392062.2,ENST00000341329.3,ENST00000473218.1	chr2	227771566:227771597:227773537:227773594:227778923:227779067,	227773538	227773594	227773563	227773563	Frame_Shift_Del	C	-	p.Y227fs
LIHC	TCGA-DD-A1EG-01	COL4A3	ENST00000396578.3	chr2	228141100:228141193:228142164:228142269:228144508:228144606,	228142165	228142269	228142224	228142224	Frame_Shift_Del	C	-	p.P694fs
LIHC	TCGA-DD-A1EG-01	COL4A3	ENST00000469504.1,ENST00000396578.3	chr2	228173919:228174034:228175491:228175664:228176501:228176586,	228175492	228175664	228175535	228175535	Frame_Shift_Del	C	-	p.S1600fs
LIHC	TCGA-DD-A1EG-01	PID1	ENST00000392055.3	chr2	229890751:229890824:230020533:230020680:230135729:230135955,	230020534	230020680	230020631	230020631	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A1EG-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230653513:230653656:230654326:230654478:230655839:230655967,	230654327	230654478	230654373	230654373	Frame_Shift_Del	A	-	p.L1475fs
LIHC	TCGA-DD-A1EG-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724116	230724116	Frame_Shift_Del	T	-	p.K91fs
LIHC	TCGA-DD-A1EG-01	SLC16A14	ENST00000295190.4	chr2	230899697:230902247:230910460:230911438:230914476:230914620,	230910461	230911438	230910564	230910564	Frame_Shift_Del	G	-	p.P426fs
LIHC	TCGA-DD-A1EG-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231155174:231155279:231157360:231157503:231158985:231159033,	231157361	231157503	231157406	231157406	Frame_Shift_Del	C	-	p.T624fs
LIHC	TCGA-DD-A1EG-01	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1	chr2	231313802:231313865:231314275:231314425:231314886:231314970,	231314276	231314425	231314310	231314310	Frame_Shift_Del	C	-	p.H207fs
LIHC	TCGA-DD-A1EG-01	CAB39	ENST00000478152.1,ENST00000258418.5,ENST00000410084.3,ENST00000409788.3	chr2	231655612:231655751:231657927:231658046:231663443:231663612,	231657928	231658046	231657950	231657950	Frame_Shift_Del	T	-	p.I101fs
LIHC	TCGA-DD-A1EG-01	CAB39	ENST00000258418.5,ENST00000410084.3,ENST00000409788.3	chr2	231663443:231663612:231674977:231675037:231678763:231678829,	231674978	231675037	231675014	231675014	Frame_Shift_Del	T	-	p.F202fs
LIHC	TCGA-DD-A1EG-01	ITM2C	ENST00000409704.2,ENST00000335005.6,ENST00000326427.6	chr2	231740394:231740523:231741571:231741682:231742114:231742265,	231741572	231741682	231741644	231741644	Frame_Shift_Del	C	-	p.P176fs
LIHC	TCGA-DD-A1EG-01	PSMD1	ENST00000308696.6,ENST00000409643.1,ENST00000373635.4	chr2	231926961:231927035:231927219:231927389:231931619:231931825,	231927220	231927389	231927281	231927281	Frame_Shift_Del	A	-	p.K66fs
LIHC	TCGA-DD-A1EG-01	PSMD1	ENST00000440838.1	chr2	231926961:231927035:231927219:231927407:231931619:231931825,	231927220	231927407	231927281	231927281	Frame_Shift_Del	A	-	p.K66fs
LIHC	TCGA-DD-A1EG-01	NCL	ENST00000494618.1,ENST00000322723.4,ENST00000461347.1	chr2	232323711:232323836:232324862:232325004:232325188:232325275,	232324863	232325004	232324955	232324955	Frame_Shift_Del	A	-	p.F316fs
LIHC	TCGA-DD-A1EG-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000470087.1,ENST00000445090.1,ENST00000409401.3,ENST00000390005.5,ENST00000273009.6	chr2	232894688:232894790:232952196:232952431:232995328:232995429,	232952197	232952431	232952253	232952253	Frame_Shift_Del	C	-	p.I141fs
LIHC	TCGA-DD-A1EG-01	CHRND	ENST00000258385.3,ENST00000543200.1,ENST00000446616.1	chr2	233393210:233393366:233394648:233394849:233396061:233396173,233393571:233393681:233394648:233394849:233396061:233396173,	233394649	233394849	233394661	233394661	Frame_Shift_Del	G	-	p.W211fs
LIHC	TCGA-DD-A1EG-01	USP40	ENST00000450966.1,ENST00000427112.2,ENST00000251722.6	chr2	234438076:234438158:234442124:234442425:234449307:234449412,	234442125	234442425	234442212	234442212	Frame_Shift_Del	C	-	p.E461fs
LIHC	TCGA-DD-A1EG-01	USP40	ENST00000450966.1,ENST00000427112.2,ENST00000251722.6	chr2	234457746:234457875:234460021:234460165:234463025:234463172,	234460022	234460165	234460030	234460030	Frame_Shift_Del	A	-	p.C277fs
LIHC	TCGA-DD-A1EG-01	MROH2A	ENST00000487979.1,ENST00000389758.3	chr2	234738265:234738421:234740054:234740186:234740822:234740925,	234740055	234740186	234740092	234740092	Frame_Shift_Del	G	-	p.W1549fs
LIHC	TCGA-DD-A1EG-01	SPP2	ENST00000168148.3	chr2	234959480:234959515:234959614:234959739:234964701:234964922,234959480:234959515:234959614:234959739:234967479:234967602,	234959615	234959739	234959676	234959676	Frame_Shift_Del	A	-	p.V49fs
LIHC	TCGA-DD-A1EG-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951153	235951153	Frame_Shift_Del	C	-	p.N580fs
LIHC	TCGA-DD-A1EG-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277223	238277223	Frame_Shift_Del	G	-	p.P1630fs
LIHC	TCGA-DD-A1EG-01	MLPH	ENST00000478712.1,ENST00000338530.4,ENST00000437893.1,ENST00000264605.3,ENST00000468178.1,ENST00000445024.2,ENST00000432475.1,ENST00000410032.1,ENST00000464123.1	chr2	238449091:238449176:238449444:238449600:238451209:238451302,	238449445	238449600	238449486	238449486	Frame_Shift_Del	C	-	p.S444fs
LIHC	TCGA-DD-A1EG-01	LRRFIP1	ENST00000478958.1,ENST00000308482.9,ENST00000464608.1,ENST00000474195.1	chr2	238681508:238681588:238683000:238683105:238688064:238688204,	238683001	238683105	238683056	238683056	Frame_Shift_Del	A	-	p.E588fs
LIHC	TCGA-DD-A1EG-01	LRRFIP1	ENST00000478958.1,ENST00000308482.9,ENST00000464608.1,ENST00000474195.1	chr2	238681508:238681588:238683000:238683105:238688064:238688204,	238683001	238683105	238683083	238683083	Frame_Shift_Del	A	-	p.E597fs
LIHC	TCGA-DD-A1EG-01	PER2	ENST00000254658.3,ENST00000254657.3	chr2	239159191:239159384:239160239:239160402:239161552:239162343,	239160240	239160402	239160366	239160366	Frame_Shift_Del	G	-	p.L1050fs
LIHC	TCGA-DD-A1EG-01	TRAF3IP1	ENST00000391993.3,ENST00000391994.2,ENST00000373327.4	chr2	239237571:239237983:239241464:239241536:239242600:239242676,	239241465	239241536	239241509	239241509	Frame_Shift_Del	T	-	p.T320fs
LIHC	TCGA-DD-A1EG-01	ASB1	ENST00000438264.1	chr2	239342194:239342336:239344351:239344654:239352982:239353016,239335669:239335760:239344351:239344654:239352982:239353016,	239344352	239344654	239344487	239344487	Frame_Shift_Del	A	-	p.V109fs
LIHC	TCGA-DD-A1EG-01	HDAC4	ENST00000543185.1,ENST00000487617.1,ENST00000345617.3	chr2	240009254:240009310:240011704:240011812:240016705:240016752,	240011705	240011812	240011770	240011770	Frame_Shift_Del	C	-	p.A771fs
LIHC	TCGA-DD-A1EG-01	HDAC4	ENST00000541256.1,ENST00000463007.1,ENST00000535493.1,ENST00000345617.3,ENST00000493582.1	chr2	240061379:240061492:240066278:240066410:240078347:240078469,	240066279	240066410	240066299	240066299	Frame_Shift_Del	T	-	p.K282fs
LIHC	TCGA-DD-A1EG-01	OTOS	ENST00000391989.2,ENST00000319460.1	chr2	241079478:241079505:241079685:241079861:241080036:241080073,	241079686	241079861	241079720	241079720	Frame_Shift_Del	C	-	p.G8fs
LIHC	TCGA-DD-A1EG-01	GPC1	ENST00000264039.2,ENST00000420138.1,ENST00000495100.1,ENST00000469694.1	chr2	241404032:241404163:241404272:241404392:241404493:241404627,	241404273	241404392	241404305	241404305	Frame_Shift_Del	C	-	p.N349fs
LIHC	TCGA-DD-A1EG-01	GPC1	ENST00000455111.1	chr2	241404032:241404163:241404251:241404392:241404493:241404627,	241404252	241404392	241404305	241404305	Frame_Shift_Del	C	-	p.N349fs
LIHC	TCGA-DD-A1EG-01	ANKMY1	ENST00000401804.1,ENST00000272972.3,ENST00000403283.1,ENST00000361678.4,ENST00000373320.4,ENST00000373318.2,ENST00000391987.1,ENST00000406958.1	chr2	241452236:241452359:241459778:241459950:241463301:241463426,	241459779	241459950	241459914	241459914	Frame_Shift_Del	C	-	p.L534fs
LIHC	TCGA-DD-A1EG-01	ANKMY1	ENST00000401804.1,ENST00000272972.3,ENST00000391987.1	chr2	241465220:241465266:241465645:241465862:241468453:241468926,	241465646	241465862	241465814	241465814	Frame_Shift_Del	C	-	p.G245fs
LIHC	TCGA-DD-A1EG-01	RNPEPL1	ENST00000270357.4	chr2	241512544:241512678:241513191:241513308:241513529:241513765,	241513192	241513308	241513302	241513302	Frame_Shift_Del	G	-	p.W80fs
LIHC	TCGA-DD-A1EG-01	KIF1A	ENST00000320389.7,ENST00000492812.1,ENST00000498729.2,ENST00000460788.1	chr2	241657466:241657585:241658422:241658615:241659190:241659343,	241658423	241658615	241658583	241658583	Frame_Shift_Del	A	-	p.F1685fs
LIHC	TCGA-DD-A1EG-01	SNED1	ENST00000342631.6,ENST00000401884.1,ENST00000310397.8,ENST00000405547.3	chr2	241992569:241992743:242002207:242002321:242003003:242003117,	242002208	242002321	242002243	242002243	Frame_Shift_Del	G	-	p.G766fs
LIHC	TCGA-DD-A1EG-01	PPP1R7	ENST00000438799.1,ENST00000406106.3,ENST00000491715.1,ENST00000234038.6,ENST00000272983.8,ENST00000423280.1,ENST00000401987.1,ENST00000402734.1,ENST00000404405.3,ENST00000407025.1,ENST00000485630.1,ENST00000450367.1	chr2	242098627:242098758:242099746:242099909:242102699:242102816,	242099747	242099909	242099762	242099762	Frame_Shift_Del	T	-	p.S150fs
LIHC	TCGA-DD-A1EG-01	HDLBP	ENST00000470482.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000310931.4	chr2	242170189:242170359:242173234:242173378:242174535:242174670,	242173235	242173378	242173259	242173259	Frame_Shift_Del	A	-	p.F1088fs
LIHC	TCGA-DD-A1EG-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000452931.1,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000310931.4	chr2	242186470:242186557:242187417:242187531:242187658:242187763,	242187418	242187531	242187498	242187498	Frame_Shift_Del	T	-	p.S551fs
LIHC	TCGA-DD-A1EG-01	HDLBP	ENST00000453141.1	chr2	242194556:242194573:242194788:242194926:242195598:242195814,	242194789	242194926	242194823	242194823	Frame_Shift_Del	T	-	p.K349fs
LIHC	TCGA-DD-A1EG-01	HDLBP	ENST00000391975.1,ENST00000391976.2,ENST00000310931.4	chr2	242194556:242194573:242194788:242194995:242195598:242195814,	242194789	242194995	242194823	242194823	Frame_Shift_Del	T	-	p.K349fs
LIHC	TCGA-DD-A1EG-01	HDLBP	ENST00000422933.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000428482.1,ENST00000452065.1,ENST00000310931.4	chr2	242196179:242196221:242202125:242202341:242203862:242204020,	242202126	242202341	242202269	242202269	Frame_Shift_Del	T	-	p.I103fs
LIHC	TCGA-DD-A1EG-01	SEPT2	ENST00000401990.1	chr2	242274540:242274627:242274736:242274766:242275389:242275488,	242274737	242274766	242274758	242274758	Frame_Shift_Del	T	-	p.L81fs
LIHC	TCGA-DD-A1EG-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373597	242373597	Frame_Shift_Del	T	-	p.F298fs
LIHC	TCGA-DD-A1EG-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373660	242373660	Frame_Shift_Del	T	-	p.F320fs
LIHC	TCGA-DD-A1EG-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242371093:242371189:242373572:242373736:242374376:242374445,	242373573	242373736	242373670	242373670	Frame_Shift_Del	T	-	p.L323fs
LIHC	TCGA-DD-A1EG-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242375895:242375953:242380718:242380971:242396161:242396337,	242380719	242380971	242380730	242380730	Frame_Shift_Del	C	-	p.F390fs
LIHC	TCGA-DD-A1EG-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242375895:242375953:242380718:242380971:242396161:242396337,	242380719	242380971	242380916	242380916	Frame_Shift_Del	C	-	p.G452fs
LIHC	TCGA-DD-A1EG-01	FARP2	ENST00000412332.1	chr2	242432807:242432859:242433422:242433556:242433891:242434255,	242433423	242433556	242433441	242433441	Frame_Shift_Del	G	-	p.Q1022fs
LIHC	TCGA-DD-A1EG-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573393	242573393	Frame_Shift_Del	A	-	p.F60fs
LIHC	TCGA-DD-A1EG-01	PDCD1	ENST00000334409.5	chr2	242794100:242794135:242794349:242794505:242794772:242795038,	242794350	242794505	242794468	242794468	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A1EG-01	PDCD1	ENST00000334409.5	chr2	242794100:242794135:242794349:242794505:242794772:242795038,	242794350	242794505	242794486	242794486	Frame_Shift_Del	G	-	p.P152fs
LIHC	TCGA-DD-A1EG-01	CHL1	ENST00000256509.2	chr3	382476:382599:383594:383765:384666:384714,	383595	383765	383641	383641	Frame_Shift_Del	G	-	p.K185fs
LIHC	TCGA-DD-A1EG-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1424976:1425092:1427294:1427481:1443116:1443229,	1427295	1427481	1427439	1427439	Frame_Shift_Del	G	-	p.G888fs
LIHC	TCGA-DD-A1EG-01	CRBN	ENST00000231948.4,ENST00000459840.1,ENST00000432408.2,ENST00000424814.1	chr3	3195107:3195172:3195643:3195759:3196430:3196515,	3195644	3195759	3195754	3195754	Frame_Shift_Del	A	-	p.S281fs
LIHC	TCGA-DD-A1EG-01	ITPR1	ENST00000493491.1,ENST00000478515.1,ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000463980.1,ENST00000302640.8,ENST00000544951.1,ENST00000354582.6	chr3	4856736:4856902:4859765:4859926:4878457:4878619,	4859766	4859926	4859872	4859872	Frame_Shift_Del	A	-	p.V2643fs
LIHC	TCGA-DD-A1EG-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944142	8944142	Frame_Shift_Del	T	-	p.I364fs
LIHC	TCGA-DD-A1EG-01	RAD18	ENST00000415439.1,ENST00000469793.1,ENST00000421052.1,ENST00000264926.2,ENST00000413832.1	chr3	8988926:8988974:8990192:8990254:9000603:9000685,	8990193	8990254	8990232	8990232	Frame_Shift_Del	T	-	p.K52fs
LIHC	TCGA-DD-A1EG-01	SRGAP3	ENST00000360413.3,ENST00000383836.3	chr3	9025198:9027616:9032195:9032523:9034589:9034739,	9032196	9032523	9032403	9032403	Frame_Shift_Del	G	-	p.P893fs
LIHC	TCGA-DD-A1EG-01	SETD5	ENST00000466242.1,ENST00000413704.1,ENST00000493918.1,ENST00000402198.1,ENST00000302463.6,ENST00000399686.2,ENST00000407969.1,ENST00000402466.1,ENST00000406341.1	chr3	9506108:9506356:9512142:9512613:9514919:9515056,	9512143	9512613	9512436	9512436	Frame_Shift_Del	G	-	p.V908fs
LIHC	TCGA-DD-A1EG-01	BRPF1	ENST00000457855.1,ENST00000383829.2,ENST00000302054.3,ENST00000424362.1	chr3	9785264:9785585:9785907:9786192:9786691:9786839,	9785908	9786192	9786182	9786182	Frame_Shift_Del	C	-	p.D970fs
LIHC	TCGA-DD-A1EG-01	OGG1	ENST00000302036.7,ENST00000339511.5,ENST00000302003.7,ENST00000441094.1,ENST00000302008.8,ENST00000344629.7,ENST00000449570.2	chr3	9793586:9793633:9796387:9796569:9807492:9807796,9793586:9793633:9796387:9796569:9798154:9798305,	9796388	9796569	9796560	9796560	Frame_Shift_Del	G	-	p.V246fs
LIHC	TCGA-DD-A1EG-01	OGG1	ENST00000449570.2	chr3	9798450:9798500:9800917:9800970:9807492:9807796,	9800918	9800970	9800965	9800965	Frame_Shift_Del	T	-	p.L348fs
LIHC	TCGA-DD-A1EG-01	OGG1	ENST00000302008.8	chr3	9798450:9798500:9800870:9800970:9807492:9807796,	9800871	9800970	9800965	9800965	Frame_Shift_Del	T	-	p.L348fs
LIHC	TCGA-DD-A1EG-01	TADA3	ENST00000343450.2	chr3	9831568:9831647:9832943:9833177:9833899:9834092,	9832944	9833177	9833078	9833078	Frame_Shift_Del	G	-	p.R25fs
LIHC	TCGA-DD-A1EG-01	TADA3	ENST00000439043.1	chr3	9831568:9831647:9832943:9833169:9833899:9834092,	9832944	9833169	9833078	9833078	Frame_Shift_Del	G	-	p.R25fs
LIHC	TCGA-DD-A1EG-01	RPUSD3	ENST00000424438.1	chr3	9880715:9880855:9881867:9881991:9882215:9882300,9879848:9879891:9881867:9881991:9882215:9882300,	9881868	9881991	9881972	9881972	Frame_Shift_Del	G	-	p.P207fs
LIHC	TCGA-DD-A1EG-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10127495:10127606:10128817:10128948:10130132:10130226,	10128818	10128948	10128904	10128904	Frame_Shift_Del	T	-	p.I1141fs
LIHC	TCGA-DD-A1EG-01	SLC6A11	ENST00000254488.2	chr3	10885898:10886031:10916645:10916780:10953774:10953878,	10916646	10916780	10916703	10916703	Frame_Shift_Del	G	-	p.G272fs
LIHC	TCGA-DD-A1EG-01	ATG7	ENST00000414717.1,ENST00000354449.3,ENST00000446110.1,ENST00000427759.1	chr3	11406132:11406208:11421445:11421526:11468277:11468400,	11421446	11421526	11421459	11421459	Frame_Shift_Del	T	-	p.L630fs
LIHC	TCGA-DD-A1EG-01	TSEN2	ENST00000415684.1,ENST00000444864.1,ENST00000473755.1,ENST00000314571.7	chr3	12546652:12546730:12558109:12558160:12560557:12560696,12545145:12545283:12558109:12558160:12560557:12560696,	12558110	12558160	12558113	12558113	Frame_Shift_Del	T	-	p.F280fs
LIHC	TCGA-DD-A1EG-01	RAF1	ENST00000251849.4,ENST00000534997.1,ENST00000542177.1,ENST00000465826.1,ENST00000423275.1,ENST00000442415.2,ENST00000432427.2	chr3	12641189:12641307:12641650:12641778:12641886:12641914,	12641651	12641778	12641658	12641658	Frame_Shift_Del	T	-	p.N328fs
LIHC	TCGA-DD-A1EG-01	TMEM40	ENST00000476331.1,ENST00000428020.1,ENST00000435575.1,ENST00000480698.1,ENST00000435218.2,ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12776205:12776292:12777053:12777116:12778076:12778151,	12777054	12777116	12777078	12777078	Frame_Shift_Del	G	-	p.L220fs
LIHC	TCGA-DD-A1EG-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13613007	13613007	Frame_Shift_Del	C	-	p.S384fs
LIHC	TCGA-DD-A1EG-01	CHCHD4	ENST00000396914.3	chr3	14154643:14154694:14157925:14158024:14166154:14166249,	14157926	14158024	14157983	14157983	Frame_Shift_Del	T	-	p.T35fs
LIHC	TCGA-DD-A1EG-01	FGD5	ENST00000468662.1,ENST00000476851.1,ENST00000285046.5,ENST00000543601.1	chr3	14942509:14942568:14949146:14949218:14952367:14952436,	14949147	14949218	14949187	14949187	Frame_Shift_Del	G	-	p.R1102fs
LIHC	TCGA-DD-A1EG-01	NR2C2	ENST00000406272.2,ENST00000393102.3,ENST00000323373.6,ENST00000437120.1,ENST00000475707.1,ENST00000425241.1	chr3	15055095:15055296:15057658:15057761:15062259:15062439,	15057659	15057761	15057752	15057752	Frame_Shift_Del	A	-	p.K123fs
LIHC	TCGA-DD-A1EG-01	NR2C2	ENST00000406272.2,ENST00000393102.3,ENST00000478572.1,ENST00000323373.6,ENST00000475707.1,ENST00000425241.1	chr3	15070092:15070226:15071781:15071959:15073885:15074007,	15071782	15071959	15071849	15071849	Frame_Shift_Del	G	-	p.G334fs
LIHC	TCGA-DD-A1EG-01	NR2C2	ENST00000406272.2,ENST00000393102.3,ENST00000478572.1,ENST00000323373.6,ENST00000475707.1,ENST00000425241.1	chr3	15070092:15070226:15071781:15071959:15073885:15074007,	15071782	15071959	15071934	15071934	Frame_Shift_Del	T	-	p.L362fs
LIHC	TCGA-DD-A1EG-01	CAPN7	ENST00000253693.2	chr3	15282260:15282360:15282959:15283095:15283684:15283760,	15282960	15283095	15283047	15283047	Frame_Shift_Del	G	-	p.Q580fs
LIHC	TCGA-DD-A1EG-01	METTL6	ENST00000443029.1	chr3	15425408:15425694:15452751:15452944:15455527:15455604,	15452752	15452944	15452777	15452777	Frame_Shift_Del	C	-	p.D281fs
LIHC	TCGA-DD-A1EG-01	METTL6	ENST00000383790.3,ENST00000383789.5	chr3	15466461:15466596:15467793:15468142:15468908:15469025,	15467794	15468142	15467998	15467998	Frame_Shift_Del	T	-	p.K7fs
LIHC	TCGA-DD-A1EG-01	COLQ	ENST00000383788.5,ENST00000383781.4,ENST00000435459.2,ENST00000383787.2,ENST00000603808.1,ENST00000383786.5,ENST00000383785.2	chr3	15497966:15498086:15499692:15499832:15507847:15507944,	15499693	15499832	15499762	15499762	Frame_Shift_Del	G	-	p.P295fs
LIHC	TCGA-DD-A1EG-01	ANKRD28	ENST00000399451.2,ENST00000451422.1,ENST00000498524.1,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15727728:15727816:15731525:15731727:15736245:15736320,	15731526	15731727	15731563	15731563	Frame_Shift_Del	T	-	p.K612fs
LIHC	TCGA-DD-A1EG-01	RFTN1	ENST00000451036.1,ENST00000441460.1,ENST00000431547.1,ENST00000334133.4,ENST00000449415.1	chr3	16450979:16450990:16475357:16475544:16535231:16535384,	16475358	16475544	16475401	16475401	Frame_Shift_Del	G	-	p.L97fs
LIHC	TCGA-DD-A1EG-01	KCNH8	ENST00000452398.1	chr3	19190025:19190287:19295145:19295379:19322689:19322821,	19295146	19295379	19295280	19295280	Frame_Shift_Del	T	-	p.F71fs
LIHC	TCGA-DD-A1EG-01	ZNF385D	ENST00000446749.1	chr3	21606093:21606176:21706377:21706520:21792386:21792606,	21706378	21706520	21706429	21706429	Frame_Shift_Del	G	-	p.P38fs
LIHC	TCGA-DD-A1EG-01	NKIRAS1	ENST00000443659.2,ENST00000388759.3,ENST00000425478.2,ENST00000421515.2,ENST00000416026.2	chr3	23934555:23934828:23942298:23942540:23952301:23952412,	23942299	23942540	23942473	23942473	Frame_Shift_Del	T	-	p.K54fs
LIHC	TCGA-DD-A1EG-01	NKIRAS1	ENST00000416026.2	chr3	23942298:23942540:23952301:23952412:23958274:23958415,	23952302	23952412	23952344	23952344	Frame_Shift_Del	T	-	p.T18fs
LIHC	TCGA-DD-A1EG-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25656963:25657077:25659908:25660000:25660144:25660340,	25659909	25660000	25659979	25659979	Frame_Shift_Del	A	-	p.L1089fs
LIHC	TCGA-DD-A1EG-01	TOP2B	ENST00000542520.1	chr3	25656963:25657077:25660144:25660340:25661352:25661364,	25660145	25660340	25660321	25660321	Frame_Shift_Del	C	-	p.G1023fs
LIHC	TCGA-DD-A1EG-01	TOP2B	ENST00000542520.1	chr3	25656963:25657077:25660144:25660340:25661352:25661364,	25660145	25660340	25660332	25660332	Frame_Shift_Del	A	-	p.F1019fs
LIHC	TCGA-DD-A1EG-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781223	25781223	Frame_Shift_Del	A	-	p.F242fs
LIHC	TCGA-DD-A1EG-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25832863	25832863	Frame_Shift_Del	C	-	p.P118fs
LIHC	TCGA-DD-A1EG-01	NEK10	ENST00000435584.1,ENST00000341435.5,ENST00000429845.2	chr3	27326330:27326452:27329188:27329234:27332752:27332881,27326330:27326452:27329188:27329234:27332107:27332219,	27329189	27329234	27329231	27329231	Frame_Shift_Del	A	-	p.Y583fs
LIHC	TCGA-DD-A1EG-01	AZI2	ENST00000479665.1,ENST00000295748.3,ENST00000463512.1,ENST00000492044.2	chr3	28368322:28368441:28373859:28373918:28378227:28378376,	28373860	28373918	28373874	28373874	Frame_Shift_Del	T	-	p.K211fs
LIHC	TCGA-DD-A1EG-01	ZCWPW2	ENST00000419130.1,ENST00000383768.2,ENST00000421010.1	chr3	28533617:28533664:28555554:28555613:28557044:28557112,	28555555	28555613	28555567	28555567	Frame_Shift_Del	A	-	p.K224fs
LIHC	TCGA-DD-A1EG-01	STT3B	ENST00000488151.1,ENST00000295770.2	chr3	31670813:31670903:31674426:31674639:31677475:31677537,	31674427	31674639	31674442	31674442	Frame_Shift_Del	C	-	p.P736fs
LIHC	TCGA-DD-A1EG-01	STT3B	ENST00000463044.1	chr3	31670813:31670903:31674426:31674676:31677475:31677537,	31674427	31674676	31674442	31674442	Frame_Shift_Del	C	-	p.P736fs
LIHC	TCGA-DD-A1EG-01	OSBPL10	ENST00000438237.2,ENST00000396556.2,ENST00000429492.2	chr3	31710133:31710316:31712288:31712475:31725125:31725606,	31712289	31712475	31712372	31712372	Frame_Shift_Del	T	-	p.K610fs
LIHC	TCGA-DD-A1EG-01	OSBPL10	ENST00000438237.2,ENST00000396556.2,ENST00000429492.2	chr3	31725460:31725606:31743850:31744000:31774748:31774903,	31743851	31744000	31743958	31743958	Frame_Shift_Del	T	-	p.S380fs
LIHC	TCGA-DD-A1EG-01	OSBPL10	ENST00000396556.2,ENST00000485205.1,ENST00000467955.1	chr3	31789505:31789612:31871531:31871723:31917924:31918004,	31871532	31871723	31871622	31871622	Frame_Shift_Del	G	-	p.P213fs
LIHC	TCGA-DD-A1EG-01	GPD1L	ENST00000282541.5,ENST00000428684.1	chr3	32188113:32188226:32200367:32200601:32201059:32201107,	32200368	32200601	32200389	32200389	Frame_Shift_Del	G	-	p.G214fs
LIHC	TCGA-DD-A1EG-01	CNOT10	ENST00000538368.1,ENST00000463697.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000455381.1	chr3	32758645:32758729:32761605:32761723:32766941:32767091,	32761606	32761723	32761627	32761627	Frame_Shift_Del	A	-	p.K256fs
LIHC	TCGA-DD-A1EG-01	GLB1	ENST00000307377.8,ENST00000399402.3,ENST00000307363.5,ENST00000445488.2	chr3	33038220:33038836:33055547:33055802:33058200:33058332,	33055548	33055802	33055594	33055594	Frame_Shift_Del	G	-	p.P563fs
LIHC	TCGA-DD-A1EG-01	CLASP2	ENST00000468888.2,ENST00000359576.5,ENST00000399362.4,ENST00000307312.7	chr3	33704936:33705007:33725850:33725948:33728551:33728627,	33725851	33725948	33725892	33725892	Frame_Shift_Del	T	-	p.K201fs
LIHC	TCGA-DD-A1EG-01	PDCD6IP	ENST00000307296.3,ENST00000412887.1	chr3	33866732:33866832:33867971:33868072:33870344:33870461,	33867972	33868072	33868040	33868040	Frame_Shift_Del	A	-	p.K229fs
LIHC	TCGA-DD-A1EG-01	PDCD6IP	ENST00000457054.2	chr3	33867971:33868072:33870329:33870461:33877535:33877664,	33870330	33870461	33870332	33870332	Frame_Shift_Del	T	-	p.Y240fs
LIHC	TCGA-DD-A1EG-01	PDCD6IP	ENST00000457054.2	chr3	33867971:33868072:33870329:33870461:33877535:33877664,	33870330	33870461	33870413	33870413	Frame_Shift_Del	C	-	p.I262fs
LIHC	TCGA-DD-A1EG-01	PDCD6IP	ENST00000307296.3	chr3	33867971:33868072:33870344:33870461:33877535:33877664,	33870345	33870461	33870413	33870413	Frame_Shift_Del	C	-	p.I262fs
LIHC	TCGA-DD-A1EG-01	ARPP21	ENST00000417925.1,ENST00000337271.5,ENST00000444190.1,ENST00000458225.1,ENST00000187397.4	chr3	35725217:35725307:35729230:35729375:35730798:35730877,	35729231	35729375	35729371	35729371	Frame_Shift_Del	A	-	p.S134fs
LIHC	TCGA-DD-A1EG-01	STAC	ENST00000434649.1	chr3	36422176:36422246:36484888:36485132:36527625:36527741,	36484889	36485132	36484907	36484907	Frame_Shift_Del	A	-	p.K55fs
LIHC	TCGA-DD-A1EG-01	STAC	ENST00000457375.2	chr3	36422176:36422246:36484855:36485132:36527625:36527741,	36484856	36485132	36484907	36484907	Frame_Shift_Del	A	-	p.K55fs
LIHC	TCGA-DD-A1EG-01	STAC	ENST00000273183.3,ENST00000476388.1	chr3	36422176:36422246:36524483:36524584:36526468:36526550,36484888:36485132:36524483:36524584:36526468:36526550,	36524484	36524584	36524488	36524488	Frame_Shift_Del	A	-	p.T131fs
LIHC	TCGA-DD-A1EG-01	MLH1	ENST00000447829.1	chr3	37053572:37053590:37055922:37056035:37058996:37059090,37053572:37053590:37055922:37056035:37061800:37061954,	37055923	37056035	37055966	37055966	Frame_Shift_Del	A	-	p.K241fs
LIHC	TCGA-DD-A1EG-01	MLH1	ENST00000447829.1	chr3	37058996:37059090:37061800:37061954:37067127:37067498,37055922:37056035:37061800:37061954:37067127:37067410,	37061801	37061954	37061921	37061921	Frame_Shift_Del	G	-	p.L335fs
LIHC	TCGA-DD-A1EG-01	MLH1	ENST00000456676.2	chr3	37083758:37083822:37089009:37089174:37090007:37090100,37083758:37083822:37089009:37089174:37091976:37092335,	37089010	37089174	37089164	37089164	Frame_Shift_Del	A	-	p.E629fs
LIHC	TCGA-DD-A1EG-01	LRRFIP2	ENST00000354379.4,ENST00000396428.2	chr3	37125135:37125297:37136282:37136399:37138106:37138151,	37136283	37136399	37136330	37136330	Frame_Shift_Del	C	-	p.D330fs
LIHC	TCGA-DD-A1EG-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365107	37365107	Frame_Shift_Del	A	-	p.E577fs
LIHC	TCGA-DD-A1EG-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365305	37365305	Frame_Shift_Del	A	-	p.E643fs
LIHC	TCGA-DD-A1EG-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367117	37367117	Frame_Shift_Del	T	-	p.L1247fs
LIHC	TCGA-DD-A1EG-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368650	37368650	Frame_Shift_Del	A	-	p.E1758fs
LIHC	TCGA-DD-A1EG-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368675	37368675	Frame_Shift_Del	T	-	p.H1766fs
LIHC	TCGA-DD-A1EG-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37369060	37369060	Frame_Shift_Del	A	-	p.K1895fs
LIHC	TCGA-DD-A1EG-01	VILL	ENST00000383759.2,ENST00000492491.2,ENST00000484717.1,ENST00000283713.6	chr3	38035751:38035957:38037229:38037338:38038567:38038678,	38037230	38037338	38037261	38037261	Frame_Shift_Del	A	-	p.K125fs
LIHC	TCGA-DD-A1EG-01	VILL	ENST00000383759.2,ENST00000465644.1,ENST00000283713.6	chr3	38043886:38044066:38044658:38044804:38045745:38045890,	38044659	38044804	38044726	38044726	Frame_Shift_Del	A	-	p.E576fs
LIHC	TCGA-DD-A1EG-01	PLCD1	ENST00000461445.1	chr3	38049764:38049858:38049948:38050649:38050762:38050922,	38049949	38050649	38050617	38050617	Frame_Shift_Del	G	-	p.L568fs
LIHC	TCGA-DD-A1EG-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38103659:38103859:38104071:38104292:38105331:38105410,	38104072	38104292	38104179	38104179	Frame_Shift_Del	A	-	p.L327fs
LIHC	TCGA-DD-A1EG-01	DLEC1	ENST00000452631.2,ENST00000308059.6	chr3	38163118:38163272:38163561:38163685:38163779:38164229,	38163562	38163685	38163608	38163608	Frame_Shift_Del	A	-	p.P1689fs
LIHC	TCGA-DD-A1EG-01	DLEC1	ENST00000452631.2,ENST00000308059.6	chr3	38163118:38163272:38163561:38163685:38163779:38164229,	38163562	38163685	38163645	38163645	Frame_Shift_Del	C	-	p.P1703fs
LIHC	TCGA-DD-A1EG-01	SCN11A	ENST00000450244.1,ENST00000302328.3,ENST00000456224.3,ENST00000444237.2	chr3	38936023:38936455:38938335:38938716:38941384:38941564,	38938336	38938716	38938482	38938482	Frame_Shift_Del	C	-	p.D753fs
LIHC	TCGA-DD-A1EG-01	TTC21A	ENST00000301819.6,ENST00000430597.2,ENST00000431162.2,ENST00000479954.1	chr3	39152341:39152508:39153948:39154071:39156075:39156233,	39153949	39154071	39153991	39153991	Frame_Shift_Del	C	-	p.P160fs
LIHC	TCGA-DD-A1EG-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2,ENST00000431162.2,ENST00000493856.1,ENST00000472866.2	chr3	39177890:39177998:39178389:39178551:39178685:39178744,	39178390	39178551	39178513	39178513	Frame_Shift_Del	G	-	p.V1081fs
LIHC	TCGA-DD-A1EG-01	CCR8	ENST00000545843.1,ENST00000414803.1	chr3	39371263:39371320:39373808:39373922:39374095:39375002,	39373809	39373922	39373891	39373891	Frame_Shift_Del	C	-	p.S23fs
LIHC	TCGA-DD-A1EG-01	EIF1B	ENST00000488260.1	chr3	40351316:40351463:40352383:40352547:40352960:40353062,	40352384	40352547	40352421	40352421	Frame_Shift_Del	C	-	p.L23fs
LIHC	TCGA-DD-A1EG-01	EIF1B	ENST00000488260.1	chr3	40351316:40351463:40352383:40352547:40352960:40353062,	40352384	40352547	40352428	40352428	Frame_Shift_Del	G	-	p.G26fs
LIHC	TCGA-DD-A1EG-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000465552.1,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41275644:41275788:41277214:41277334:41277839:41277990,	41277215	41277334	41277292	41277292	Frame_Shift_Del	A	-	p.R587fs
LIHC	TCGA-DD-A1EG-01	TRAK1	ENST00000484786.1,ENST00000487159.1	chr3	42128691:42128892:42166911:42167106:42218305:42218382,	42166912	42167106	42166974	42166974	Frame_Shift_Del	C	-	p.P52fs
LIHC	TCGA-DD-A1EG-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3,ENST00000427771.1	chr3	42240668:42240745:42242309:42242546:42243927:42244244,	42242310	42242546	42242450	42242450	Frame_Shift_Del	C	-	p.T444fs
LIHC	TCGA-DD-A1EG-01	TRAK1	ENST00000396175.1,ENST00000487159.1,ENST00000327628.5,ENST00000341421.3	chr3	42242309:42242546:42243927:42244244:42251258:42251414,	42243928	42244244	42243961	42243961	Frame_Shift_Del	G	-	p.P487fs
LIHC	TCGA-DD-A1EG-01	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000436487.1,ENST00000443646.1,ENST00000325123.4	chr3	42569542:42569615:42572270:42572424:42572962:42573023,	42572271	42572424	42572291	42572291	Frame_Shift_Del	G	-	p.M178fs
LIHC	TCGA-DD-A1EG-01	VIPR1	ENST00000438259.2,ENST00000439910.1	chr3	42567378:42567485:42572270:42572404:42572962:42573018,	42572271	42572404	42572291	42572291	Frame_Shift_Del	G	-	p.M178fs
LIHC	TCGA-DD-A1EG-01	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000436487.1,ENST00000443646.1,ENST00000325123.4	chr3	42569542:42569615:42572270:42572424:42572962:42573023,	42572271	42572424	42572295	42572295	Frame_Shift_Del	T	-	p.F181fs
LIHC	TCGA-DD-A1EG-01	VIPR1	ENST00000438259.2,ENST00000439910.1	chr3	42567378:42567485:42572270:42572404:42572962:42573018,	42572271	42572404	42572295	42572295	Frame_Shift_Del	T	-	p.F181fs
LIHC	TCGA-DD-A1EG-01	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000436487.1,ENST00000443646.1,ENST00000325123.4	chr3	42569542:42569615:42572270:42572424:42572962:42573023,	42572271	42572424	42572401	42572401	Frame_Shift_Del	G	-	p.W215fs
LIHC	TCGA-DD-A1EG-01	VIPR1	ENST00000438259.2,ENST00000439910.1	chr3	42567378:42567485:42572270:42572404:42572962:42573018,	42572271	42572404	42572401	42572401	Frame_Shift_Del	G	-	p.W215fs
LIHC	TCGA-DD-A1EG-01	SEC22C	ENST00000264454.3,ENST00000423701.2,ENST00000273156.7	chr3	42605100:42605178:42610356:42610565:42623337:42623393,	42610357	42610565	42610521	42610521	Frame_Shift_Del	A	-	p.F6fs
LIHC	TCGA-DD-A1EG-01	HIGD1A	ENST00000452906.2	chr3	42827519:42827654:42835648:42835767:42845927:42845980,42827519:42827654:42835648:42835767:42845663:42845925,	42835649	42835767	42835677	42835677	Frame_Shift_Del	T	-	p.K23fs
LIHC	TCGA-DD-A1EG-01	HIGD1A	ENST00000418900.2	chr3	42827519:42827654:42835648:42835791:42845927:42845980,	42835649	42835791	42835677	42835677	Frame_Shift_Del	T	-	p.K23fs
LIHC	TCGA-DD-A1EG-01	ANO10	ENST00000414522.2,ENST00000350459.4,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43602864:43602894:43607144:43607219:43640023:43640158,43602864:43602894:43607144:43607219:43616300:43616356,	43607145	43607219	43607175	43607175	Frame_Shift_Del	A	-	p.F421fs
LIHC	TCGA-DD-A1EG-01	ANO10	ENST00000414522.2,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43616300:43616356:43618183:43618753:43621844:43621964,	43618184	43618753	43618702	43618702	Frame_Shift_Del	A	-	p.L215fs
LIHC	TCGA-DD-A1EG-01	ZKSCAN7	ENST00000418719.1,ENST00000431636.1	chr3	44596935:44596973:44598421:44598962:44606978:44607147,	44598422	44598962	44598575	44598575	Frame_Shift_Del	C	-	p.I12fs
LIHC	TCGA-DD-A1EG-01	ZDHHC3	ENST00000339420.2	chr3	44968193:44968339:44970797:44970928:44974609:44974691,44968104:44968339:44970797:44970928:44974398:44974482,44958900:44959635:44970797:44970928:44974609:44974691,	44970798	44970928	44970850	44970850	Frame_Shift_Del	A	-	p.F258fs
LIHC	TCGA-DD-A1EG-01	CDCP1	ENST00000296129.1	chr3	45123769:45127559:45130545:45130633:45132664:45133030,	45130546	45130633	45130572	45130572	Frame_Shift_Del	C	-	p.G685fs
LIHC	TCGA-DD-A1EG-01	CDCP1	ENST00000425231.2	chr3	45153828:45153937:45159903:45160113:45187697:45187914,	45159904	45160113	45160009	45160009	Frame_Shift_Del	T	-	p.R63fs
LIHC	TCGA-DD-A1EG-01	CDCP1	ENST00000425231.2	chr3	45153828:45153937:45159903:45160113:45187697:45187914,	45159904	45160113	45160034	45160034	Frame_Shift_Del	T	-	p.K54fs
LIHC	TCGA-DD-A1EG-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000265537.3	chr3	45537766:45537865:45541933:45542071:45554626:45554727,	45541934	45542071	45541984	45541984	Frame_Shift_Del	T	-	p.I558fs
LIHC	TCGA-DD-A1EG-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000265537.3	chr3	45537766:45537865:45541933:45542071:45554626:45554727,	45541934	45542071	45542053	45542053	Frame_Shift_Del	A	-	p.Q581fs
LIHC	TCGA-DD-A1EG-01	SACM1L	ENST00000389061.5,ENST00000455997.1,ENST00000463237.1,ENST00000445499.1,ENST00000464524.1,ENST00000418611.1,ENST00000478586.1	chr3	45746626:45746701:45748271:45748399:45750989:45751135,	45748272	45748399	45748316	45748316	Frame_Shift_Del	T	-	p.F85fs
LIHC	TCGA-DD-A1EG-01	SACM1L	ENST00000389061.5,ENST00000455997.1,ENST00000541314.1,ENST00000441228.1,ENST00000418611.1	chr3	45764966:45765035:45772792:45772872:45773544:45773643,	45772793	45772872	45772804	45772804	Frame_Shift_Del	G	-	p.K311fs
LIHC	TCGA-DD-A1EG-01	SACM1L	ENST00000389061.5,ENST00000455997.1,ENST00000541314.1,ENST00000441228.1,ENST00000418611.1	chr3	45764966:45765035:45772792:45772872:45773544:45773643,	45772793	45772872	45772832	45772832	Frame_Shift_Del	T	-	p.F321fs
LIHC	TCGA-DD-A1EG-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2	chr3	46477691:46477720:46479430:46479620:46480786:46480971,	46479431	46479620	46479503	46479503	Frame_Shift_Del	T	-	p.T677fs
LIHC	TCGA-DD-A1EG-01	PTH1R	ENST00000418619.1,ENST00000430002.2,ENST00000427125.2,ENST00000313049.5,ENST00000449590.1,ENST00000428220.1	chr3	46943255:46943350:46944015:46944157:46944238:46944280,	46944016	46944157	46944053	46944053	Frame_Shift_Del	T	-	p.F417fs
LIHC	TCGA-DD-A1EG-01	NBEAL2	ENST00000383740.2,ENST00000450053.3	chr3	47040206:47040369:47040448:47040607:47040804:47040964,	47040449	47040607	47040490	47040490	Frame_Shift_Del	T	-	p.G1142fs
LIHC	TCGA-DD-A1EG-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103806	47103806	Frame_Shift_Del	A	-	p.F2047fs
LIHC	TCGA-DD-A1EG-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143010	47143010	Frame_Shift_Del	A	-	p.F1651fs
LIHC	TCGA-DD-A1EG-01	SETD2	ENST00000445387.1,ENST00000409792.3	chr3	47144835:47144913:47147486:47147610:47155365:47155494,	47147487	47147610	47147509	47147509	Frame_Shift_Del	A	-	p.F1606fs
LIHC	TCGA-DD-A1EG-01	KLHL18	ENST00000455924.2,ENST00000442272.1	chr3	47324448:47324584:47364057:47364198:47371440:47371639,	47364058	47364198	47364136	47364136	Frame_Shift_Del	G	-	p.M113fs
LIHC	TCGA-DD-A1EG-01	PTPN23	ENST00000265562.4	chr3	47437632:47437707:47446141:47446269:47446494:47446539,	47446142	47446269	47446201	47446201	Frame_Shift_Del	C	-	p.G73fs
LIHC	TCGA-DD-A1EG-01	PTPN23	ENST00000265562.4,ENST00000431726.1,ENST00000602307.1	chr3	47453272:47453457:47453583:47453688:47453772:47453911,	47453584	47453688	47453599	47453599	Frame_Shift_Del	C	-	p.S1363fs
LIHC	TCGA-DD-A1EG-01	SCAP	ENST00000265565.5	chr3	47469128:47469157:47470002:47470160:47476497:47476627,	47470003	47470160	47470052	47470052	Frame_Shift_Del	G	-	p.R121fs
LIHC	TCGA-DD-A1EG-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618912	47618912	Frame_Shift_Del	G	-	p.Q202fs
LIHC	TCGA-DD-A1EG-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47651555:47651817:47663696:47663831:47676679:47676831,	47663697	47663831	47663795	47663795	Frame_Shift_Del	G	-	p.L895fs
LIHC	TCGA-DD-A1EG-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47702783:47702945:47703823:47704082:47712147:47712207,	47703824	47704082	47703976	47703976	Frame_Shift_Del	G	-	p.P669fs
LIHC	TCGA-DD-A1EG-01	SMARCC1	ENST00000425518.1,ENST00000254480.5,ENST00000485833.1	chr3	47777523:47777616:47779518:47779600:47787397:47787483,	47779519	47779600	47779546	47779546	Frame_Shift_Del	A	-	p.F152fs
LIHC	TCGA-DD-A1EG-01	SMARCC1	ENST00000425518.1,ENST00000254480.5,ENST00000485833.1	chr3	47777523:47777616:47779518:47779600:47787397:47787483,	47779519	47779600	47779551	47779551	Frame_Shift_Del	T	-	p.M151fs
LIHC	TCGA-DD-A1EG-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47883106:47883227:47884595:47884745:47887189:47887342,	47884596	47884745	47884619	47884619	Frame_Shift_Del	G	-	p.V232fs
LIHC	TCGA-DD-A1EG-01	MAP4	ENST00000383737.4,ENST00000335271.5,ENST00000383736.3,ENST00000429422.1,ENST00000441748.2,ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47912347:47912595:47912716:47912776:47913406:47913590,	47912717	47912776	47912728	47912728	Frame_Shift_Del	T	-	p.K1997fs
LIHC	TCGA-DD-A1EG-01	MAP4	ENST00000360240.6,ENST00000395734.3	chr3	47918906:47919013:47956306:47956429:47957440:47958031,	47956307	47956429	47956358	47956358	Frame_Shift_Del	C	-	p.E667fs
LIHC	TCGA-DD-A1EG-01	CDC25A	ENST00000302506.3,ENST00000351231.3	chr3	48215773:48215947:48218860:48218932:48219343:48219478,	48218861	48218932	48218915	48218915	Frame_Shift_Del	G	-	p.P234fs
LIHC	TCGA-DD-A1EG-01	ZNF589	ENST00000448461.1	chr3	48302302:48302429:48309404:48312459:48327735:48328120,	48309405	48312459	48310169	48310169	Frame_Shift_Del	A	-	p.K330fs
LIHC	TCGA-DD-A1EG-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000485535.1,ENST00000448774.2,ENST00000456774.1,ENST00000358536.4	chr3	48451863:48451967:48452276:48452445:48453271:48453376,	48452277	48452445	48452323	48452323	Frame_Shift_Del	T	-	p.K1790fs
LIHC	TCGA-DD-A1EG-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000449094.1,ENST00000456774.1,ENST00000358536.4	chr3	48459319:48459471:48459599:48459772:48459857:48459951,	48459600	48459772	48459683	48459683	Frame_Shift_Del	C	-	p.E1047fs
LIHC	TCGA-DD-A1EG-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000449094.1,ENST00000456774.1,ENST00000358536.4	chr3	48460325:48460448:48460652:48460775:48460985:48461083,	48460653	48460775	48460757	48460757	Frame_Shift_Del	C	-	p.A910fs
LIHC	TCGA-DD-A1EG-01	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461236	48461236	Frame_Shift_Del	G	-	p.P820fs
LIHC	TCGA-DD-A1EG-01	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461323	48461323	Frame_Shift_Del	G	-	p.P791fs
LIHC	TCGA-DD-A1EG-01	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461490	48461490	Frame_Shift_Del	G	-	p.P735fs
LIHC	TCGA-DD-A1EG-01	CCDC51	ENST00000395694.2	chr3	48475116:48475281:48476226:48476546:48481397:48481475,	48476227	48476546	48476247	48476247	Frame_Shift_Del	C	-	p.A98fs
LIHC	TCGA-DD-A1EG-01	CCDC51	ENST00000395694.2	chr3	48475116:48475281:48476226:48476546:48481397:48481475,	48476227	48476546	48476423	48476423	Frame_Shift_Del	G	-	p.P39fs
LIHC	TCGA-DD-A1EG-01	ATRIP	ENST00000346691.4,ENST00000320211.3	chr3	48488136:48488496:48491442:48491576:48493134:48493305,	48491443	48491576	48491480	48491480	Frame_Shift_Del	A	-	p.S2fs
LIHC	TCGA-DD-A1EG-01	PFKFB4	ENST00000445633.1,ENST00000545984.1,ENST00000412035.1,ENST00000541519.1,ENST00000490115.1,ENST00000417753.1,ENST00000232375.3,ENST00000536104.1,ENST00000416568.1,ENST00000383734.2,ENST00000452531.1,ENST00000468162.1	chr3	48575933:48576052:48576686:48576743:48577129:48577204,	48576687	48576743	48576735	48576735	Frame_Shift_Del	A	-	p.F154fs
LIHC	TCGA-DD-A1EG-01	COL7A1	ENST00000459756.1,ENST00000454817.1,ENST00000487017.1,ENST00000328333.8,ENST00000467985.1,ENST00000422991.1	chr3	48607190:48607193:48607312:48607348:48607566:48607611,	48607313	48607348	48607341	48607341	Frame_Shift_Del	G	-	p.P2498fs
LIHC	TCGA-DD-A1EG-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48609935:48609971:48610103:48610172:48610294:48610375,	48610104	48610172	48610137	48610137	Frame_Shift_Del	T	-	p.K2289fs
LIHC	TCGA-DD-A1EG-01	COL7A1	ENST00000454817.1,ENST00000328333.8	chr3	48630788:48630882:48630969:48631129:48631800:48631981,	48630970	48631129	48631094	48631094	Frame_Shift_Del	C	-	p.G101fs
LIHC	TCGA-DD-A1EG-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48680986:48681110:48681648:48681728:48682148:48682261,	48681649	48681728	48681671	48681671	Frame_Shift_Del	C	-	p.E2720fs
LIHC	TCGA-DD-A1EG-01	NCKIPSD	ENST00000341520.4,ENST00000416649.2,ENST00000294129.2	chr3	48716309:48716402:48716487:48716616:48716809:48716890,	48716488	48716616	48716607	48716607	Frame_Shift_Del	C	-	p.G527fs
LIHC	TCGA-DD-A1EG-01	IP6K2	ENST00000432678.2	chr3	48731607:48731673:48731891:48731958:48732522:48732851,	48731892	48731958	48731901	48731901	Frame_Shift_Del	A	-	p.L87fs
LIHC	TCGA-DD-A1EG-01	IP6K2	ENST00000432678.2	chr3	48731607:48731673:48731891:48731958:48732522:48732851,	48731892	48731958	48731909	48731909	Frame_Shift_Del	C	-	p.G84fs
LIHC	TCGA-DD-A1EG-01	ARIH2	ENST00000486316.1,ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000452385.1,ENST00000474936.2	chr3	49002351:49002415:49004557:49004708:49005966:49006014,	49004558	49004708	49004573	49004573	Frame_Shift_Del	C	-	p.P136fs
LIHC	TCGA-DD-A1EG-01	P4HTM	ENST00000343546.4	chr3	49042293:49042603:49043150:49043300:49043496:49043620,	49043151	49043300	49043193	49043193	Frame_Shift_Del	C	-	p.P415fs
LIHC	TCGA-DD-A1EG-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49049707	49049707	Frame_Shift_Del	G	-	p.R277fs
LIHC	TCGA-DD-A1EG-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49049707	49049707	Frame_Shift_Del	G	-	p.R277fs
LIHC	TCGA-DD-A1EG-01	DALRD3	ENST00000467457.1	chr3	49054044:49054106:49054206:49054280:49054660:49054789,49053861:49053944:49054206:49054280:49054660:49054789,	49054207	49054280	49054219	49054219	Frame_Shift_Del	G	-	p.P163fs
LIHC	TCGA-DD-A1EG-01	QRICH1	ENST00000357496.2,ENST00000479449.1,ENST00000424300.1,ENST00000395443.2,ENST00000498440.1	chr3	49070552:49070661:49081822:49081937:49083857:49083891,	49081823	49081937	49081903	49081903	Frame_Shift_Del	A	-	p.F569fs
LIHC	TCGA-DD-A1EG-01	QARS	ENST00000418549.1,ENST00000430182.1	chr3	49141295:49141405:49141805:49141904:49142049:49142131,	49141806	49141904	49141829	49141829	Frame_Shift_Del	C	-	p.D65fs
LIHC	TCGA-DD-A1EG-01	QARS	ENST00000420147.2,ENST00000417025.1,ENST00000470619.1,ENST00000306125.6,ENST00000482261.2	chr3	49141295:49141405:49141756:49141904:49142049:49142131,	49141757	49141904	49141829	49141829	Frame_Shift_Del	C	-	p.D65fs
LIHC	TCGA-DD-A1EG-01	USP19	ENST00000398892.3,ENST00000398896.1,ENST00000398898.2,ENST00000417901.1,ENST00000453664.1,ENST00000434032.2,ENST00000398888.2	chr3	49149716:49149835:49149921:49150062:49151424:49151526,	49149922	49150062	49150045	49150045	Frame_Shift_Del	A	-	p.F829fs
LIHC	TCGA-DD-A1EG-01	LAMB2	ENST00000486298.1	chr3	49162438:49162602:49163399:49163592:49163797:49163858,	49163400	49163592	49163421	49163421	Frame_Shift_Del	G	-	p.L775fs
LIHC	TCGA-DD-A1EG-01	LAMB2	ENST00000494831.1,ENST00000418109.1,ENST00000305544.4	chr3	49168811:49168875:49168967:49169156:49169548:49169587,	49168968	49169156	49169083	49169083	Frame_Shift_Del	A	-	p.F178fs
LIHC	TCGA-DD-A1EG-01	C3orf62	ENST00000436325.1	chr3	49311481:49311573:49313859:49314274:49314618:49314652,	49313860	49314274	49313881	49313881	Frame_Shift_Del	T	-	p.N142fs
LIHC	TCGA-DD-A1EG-01	USP4	ENST00000351842.4	chr3	49343210:49343321:49348052:49348170:49362134:49362196,	49348053	49348170	49348111	49348111	Frame_Shift_Del	G	-	p.P252fs
LIHC	TCGA-DD-A1EG-01	USP4	ENST00000416417.1,ENST00000415188.1,ENST00000265560.4	chr3	49365158:49365249:49372901:49373029:49377356:49377462,	49372902	49373029	49372968	49372968	Frame_Shift_Del	C	-	p.D55fs
LIHC	TCGA-DD-A1EG-01	MST1	ENST00000449682.2,ENST00000494828.2,ENST00000383728.3	chr3	49724581:49724718:49724796:49724911:49724988:49725101,	49724797	49724911	49724806	49724806	Frame_Shift_Del	T	-	p.N154fs
LIHC	TCGA-DD-A1EG-01	RNF123	ENST00000486102.1,ENST00000457726.1,ENST00000432042.1,ENST00000327697.6	chr3	49737100:49737205:49737659:49737785:49737904:49737997,	49737660	49737785	49737719	49737719	Frame_Shift_Del	G	-	p.K348fs
LIHC	TCGA-DD-A1EG-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49946685:49946833:49947551:49948317:49950652:49950792,49946685:49946833:49947551:49948317:49948958:49949444,	49947552	49948317	49947632	49947632	Frame_Shift_Del	G	-	p.P441fs
LIHC	TCGA-DD-A1EG-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49947551:49948317:49948958:49949444:49950652:49950792,	49948959	49949444	49949077	49949077	Frame_Shift_Del	C	-	p.G173fs
LIHC	TCGA-DD-A1EG-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50004909	50004909	Frame_Shift_Del	C	-	p.S17fs
LIHC	TCGA-DD-A1EG-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50004909	50004909	Frame_Shift_Del	C	-	p.S17fs
LIHC	TCGA-DD-A1EG-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005290	50005290	Frame_Shift_Del	T	-	p.D12fs
LIHC	TCGA-DD-A1EG-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005290	50005290	Frame_Shift_Del	T	-	p.D12fs
LIHC	TCGA-DD-A1EG-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005973	50005973	Frame_Shift_Del	T	-	p.L240fs
LIHC	TCGA-DD-A1EG-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005973	50005973	Frame_Shift_Del	T	-	p.L240fs
LIHC	TCGA-DD-A1EG-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50006156	50006156	Frame_Shift_Del	C	-	p.A301fs
LIHC	TCGA-DD-A1EG-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50006156	50006156	Frame_Shift_Del	C	-	p.A301fs
LIHC	TCGA-DD-A1EG-01	RBM5	ENST00000471995.1,ENST00000395174.2,ENST00000347869.3,ENST00000464087.2,ENST00000474818.1,ENST00000496179.1	chr3	50142509:50142575:50142981:50143142:50144199:50144234,	50142982	50143142	50143119	50143119	Frame_Shift_Del	T	-	p.F278fs
LIHC	TCGA-DD-A1EG-01	SEMA3F	ENST00000413852.1,ENST00000002829.3,ENST00000434342.1	chr3	50223098:50223140:50223321:50223479:50223713:50223781,	50223322	50223479	50223388	50223388	Frame_Shift_Del	G	-	p.G552fs
LIHC	TCGA-DD-A1EG-01	IFRD2	ENST00000438296.1,ENST00000429673.2,ENST00000414734.1,ENST00000336089.4,ENST00000436390.1,ENST00000489569.1,ENST00000417626.2	chr3	50327142:50327193:50327359:50327517:50327600:50327682,	50327360	50327517	50327376	50327376	Frame_Shift_Del	G	-	p.P177fs
LIHC	TCGA-DD-A1EG-01	POC1A	ENST00000296484.2,ENST00000474012.1,ENST00000394970.2	chr3	52183225:52183405:52183831:52184003:52185031:52185116,	52183832	52184003	52183866	52183866	Frame_Shift_Del	G	-	p.R81fs
LIHC	TCGA-DD-A1EG-01	ALAS1	ENST00000469224.1,ENST00000484952.1,ENST00000394965.2,ENST00000310271.2	chr3	52238708:52238931:52239854:52240039:52240587:52240767,	52239855	52240039	52239902	52239902	Frame_Shift_Del	T	-	p.I283fs
LIHC	TCGA-DD-A1EG-01	PPM1M	ENST00000296487.4,ENST00000467471.1,ENST00000489606.1,ENST00000457351.2,ENST00000323588.4	chr3	52280710:52280828:52280989:52281244:52281697:52281810,	52280990	52281244	52281195	52281195	Frame_Shift_Del	G	-	p.R22fs
LIHC	TCGA-DD-A1EG-01	GLYCTK	ENST00000436784.2,ENST00000473032.1,ENST00000354773.4,ENST00000486393.1,ENST00000305690.8	chr3	52321871:52321892:52324319:52324735:52324975:52325127,	52324320	52324735	52324594	52324594	Frame_Shift_Del	A	-	p.Q79fs
LIHC	TCGA-DD-A1EG-01	GLYCTK	ENST00000489173.1	chr3	52325762:52325938:52326275:52327190:52327322:52327485,	52326276	52327190	52326593	52326593	Frame_Shift_Del	A	-	p.V341fs
LIHC	TCGA-DD-A1EG-01	GLYCTK	ENST00000489173.1	chr3	52325762:52325938:52326275:52327190:52327322:52327485,	52326276	52327190	52326887	52326887	Frame_Shift_Del	G	-	p.L439fs
LIHC	TCGA-DD-A1EG-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52379510:52379722:52380487:52380786:52381839:52381990,	52380488	52380786	52380590	52380590	Frame_Shift_Del	A	-	p.N587fs
LIHC	TCGA-DD-A1EG-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52379510:52379722:52380487:52380786:52381839:52381990,	52380488	52380786	52380756	52380756	Frame_Shift_Del	G	-	p.W642fs
LIHC	TCGA-DD-A1EG-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439198	52439198	Frame_Shift_Del	G	-	p.P348fs
LIHC	TCGA-DD-A1EG-01	PHF7	ENST00000498509.2,ENST00000347025.2,ENST00000472337.1,ENST00000461861.1,ENST00000327906.3	chr3	52453935:52453950:52454326:52454451:52454918:52455011,	52454327	52454451	52454435	52454435	Frame_Shift_Del	T	-	p.F134fs
LIHC	TCGA-DD-A1EG-01	NISCH	ENST00000345716.4,ENST00000489895.1,ENST00000488380.1,ENST00000490425.1,ENST00000479054.1,ENST00000420808.2	chr3	52504874:52504923:52505829:52505993:52506318:52506389,	52505830	52505993	52505843	52505843	Frame_Shift_Del	G	-	p.L141fs
LIHC	TCGA-DD-A1EG-01	STAB1	ENST00000321725.6	chr3	52549438:52549522:52550058:52550254:52550371:52550467,	52550059	52550254	52550073	52550073	Frame_Shift_Del	C	-	p.C1321fs
LIHC	TCGA-DD-A1EG-01	STAB1	ENST00000321725.6	chr3	52549438:52549522:52550058:52550254:52550371:52550467,	52550059	52550254	52550119	52550119	Frame_Shift_Del	G	-	p.G1338fs
LIHC	TCGA-DD-A1EG-01	STAB1	ENST00000321725.6	chr3	52557442:52557592:52557667:52557772:52557886:52557998,	52557668	52557772	52557674	52557674	Frame_Shift_Del	G	-	p.G2433fs
LIHC	TCGA-DD-A1EG-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52682359:52682458:52685757:52685826:52692214:52692331,	52685758	52685826	52685769	52685769	Frame_Shift_Del	G	-	p.Q235fs
LIHC	TCGA-DD-A1EG-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000431678.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000420148.1,ENST00000337303.4	chr3	52696219:52696292:52702513:52702661:52712515:52712583,	52702514	52702661	52702538	52702538	Frame_Shift_Del	A	-	p.F120fs
LIHC	TCGA-DD-A1EG-01	SFMBT1	ENST00000296295.6,ENST00000358080.2,ENST00000394752.3,ENST00000394750.1	chr3	52968828:52968917:52977368:52977609:52988332:52988427,	52977369	52977609	52977528	52977528	Frame_Shift_Del	C	-	p.V69fs
LIHC	TCGA-DD-A1EG-01	PRKCD	ENST00000394729.2,ENST00000330452.3	chr3	53222735:53222874:53223073:53223262:53223888:53224017,	53223074	53223262	53223156	53223156	Frame_Shift_Del	C	-	p.S546fs
LIHC	TCGA-DD-A1EG-01	TKT	ENST00000462138.1,ENST00000423525.2,ENST00000296289.6,ENST00000423516.1,ENST00000461139.1,ENST00000450814.2	chr3	53260771:53260894:53262071:53262165:53262291:53262375,	53262072	53262165	53262123	53262123	Frame_Shift_Del	C	-	p.A508fs
LIHC	TCGA-DD-A1EG-01	TKT	ENST00000462138.1,ENST00000423525.2,ENST00000296289.6,ENST00000423516.1,ENST00000450814.2	chr3	53264472:53264637:53265372:53265566:53267171:53267290,	53265373	53265566	53265452	53265452	Frame_Shift_Del	G	-	p.P289fs
LIHC	TCGA-DD-A1EG-01	TKT	ENST00000462138.1,ENST00000423525.2,ENST00000296289.6,ENST00000423516.1,ENST00000450814.2	chr3	53264472:53264637:53265372:53265566:53267171:53267290,	53265373	53265566	53265470	53265470	Frame_Shift_Del	T	-	p.K283fs
LIHC	TCGA-DD-A1EG-01	TKT	ENST00000450814.2	chr3	53267171:53267290:53268998:53269080:53274266:53274364,	53268999	53269080	53269065	53269065	Frame_Shift_Del	C	-	p.G188fs
LIHC	TCGA-DD-A1EG-01	TKT	ENST00000462138.1,ENST00000423525.2,ENST00000296289.6,ENST00000469678.1	chr3	53267171:53267290:53268998:53269190:53274266:53274364,	53268999	53269190	53269065	53269065	Frame_Shift_Del	C	-	p.G188fs
LIHC	TCGA-DD-A1EG-01	CHDH	ENST00000315251.6	chr3	53852964:53853067:53853558:53853701:53854500:53854635,	53853559	53853701	53853580	53853580	Frame_Shift_Del	G	-	p.P414fs
LIHC	TCGA-DD-A1EG-01	IL17RB	ENST00000475124.1	chr3	53890870:53891013:53891642:53892845:53894156:53894255,	53891643	53892845	53891691	53891691	Frame_Shift_Del	G	-	p.G241fs
LIHC	TCGA-DD-A1EG-01	LRTM1	ENST00000493075.1	chr3	54952359:54952919:54958645:54959242:55000954:55001115,	54958646	54959242	54958869	54958869	Frame_Shift_Del	A	-	p.L127fs
LIHC	TCGA-DD-A1EG-01	CCDC66	ENST00000494672.1,ENST00000482673.1,ENST00000471681.1	chr3	56600978:56601081:56605208:56605330:56626997:56627089,56600978:56601081:56605208:56605330:56606364:56606456,	56605209	56605330	56605271	56605271	Frame_Shift_Del	A	-	p.K294fs
LIHC	TCGA-DD-A1EG-01	CCDC66	ENST00000494672.1,ENST00000482673.1,ENST00000471681.1	chr3	56600978:56601081:56605208:56605330:56626997:56627089,56600978:56601081:56605208:56605330:56606364:56606456,	56605209	56605330	56605302	56605302	Frame_Shift_Del	A	-	p.E303fs
LIHC	TCGA-DD-A1EG-01	FAM208A	ENST00000431842.2,ENST00000355628.5,ENST00000493960.2,ENST00000459993.1	chr3	56658506:56658671:56658855:56659034:56661064:56661098,	56658856	56659034	56658930	56658930	Frame_Shift_Del	T	-	p.N978fs
LIHC	TCGA-DD-A1EG-01	FAM208A	ENST00000431842.2,ENST00000355628.5,ENST00000493960.2	chr3	56661676:56661769:56662519:56662642:56667071:56667871,	56662520	56662642	56662588	56662588	Frame_Shift_Del	T	-	p.R832fs
LIHC	TCGA-DD-A1EG-01	FAM208A	ENST00000431842.2,ENST00000355628.5,ENST00000493960.2	chr3	56661676:56661769:56662519:56662642:56667071:56667871,	56662520	56662642	56662593	56662593	Frame_Shift_Del	A	-	p.L829fs
LIHC	TCGA-DD-A1EG-01	FAM208A	ENST00000431842.2,ENST00000355628.5,ENST00000493960.2	chr3	56694996:56695045:56696412:56696518:56697568:56697600,	56696413	56696518	56696464	56696464	Frame_Shift_Del	A	-	p.L370fs
LIHC	TCGA-DD-A1EG-01	FAM208A	ENST00000355628.5,ENST00000493960.2	chr3	56703727:56703819:56704100:56704173:56705627:56705720,	56704101	56704173	56704128	56704128	Frame_Shift_Del	T	-	p.I206fs
LIHC	TCGA-DD-A1EG-01	FAM208A	ENST00000355628.5,ENST00000493960.2	chr3	56705627:56705720:56707607:56707753:56716703:56717045,	56707608	56707753	56707654	56707654	Frame_Shift_Del	T	-	p.N144fs
LIHC	TCGA-DD-A1EG-01	ARHGEF3	ENST00000413728.2,ENST00000338458.4,ENST00000465659.1,ENST00000496106.1,ENST00000296315.3,ENST00000497267.1	chr3	56763048:56763650:56766265:56766452:56771212:56771383,	56766266	56766452	56766398	56766398	Frame_Shift_Del	G	-	p.H372fs
LIHC	TCGA-DD-A1EG-01	ARHGEF3	ENST00000498517.1,ENST00000473779.1,ENST00000338458.4,ENST00000468727.1,ENST00000477833.1,ENST00000477440.2,ENST00000481422.1,ENST00000496106.1	chr3	56789099:56789179:56807736:56807844:56916319:56916382,	56807737	56807844	56807759	56807759	Frame_Shift_Del	T	-	p.K67fs
LIHC	TCGA-DD-A1EG-01	DNAH12	ENST00000495027.1,ENST00000311202.6,ENST00000351747.2,ENST00000389536.4	chr3	57509529:57509611:57528427:57528630:57529923:57530068,	57528428	57528630	57528512	57528512	Frame_Shift_Del	T	-	p.N29fs
LIHC	TCGA-DD-A1EG-01	SLMAP	ENST00000417128.1,ENST00000295952.3,ENST00000428312.1,ENST00000442599.2,ENST00000449503.2,ENST00000494088.1,ENST00000416658.1,ENST00000295951.3,ENST00000495364.1	chr3	57898884:57899002:57902632:57902804:57908615:57908750,	57902633	57902804	57902753	57902753	Frame_Shift_Del	A	-	p.L719fs
LIHC	TCGA-DD-A1EG-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58067355:58067503:58080562:58080681:58081867:58081945,	58080563	58080681	58080579	58080579	Frame_Shift_Del	A	-	p.G268fs
LIHC	TCGA-DD-A1EG-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000481470.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58139101:58139368:58140517:58140655:58141686:58141802,	58140518	58140655	58140613	58140613	Frame_Shift_Del	A	-	p.K2244fs
LIHC	TCGA-DD-A1EG-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58148880:58149057:58154166:58154385:58155316:58155520,	58154167	58154385	58154190	58154190	Frame_Shift_Del	A	-	p.N2408fs
LIHC	TCGA-DD-A1EG-01	PDHB	ENST00000383714.4,ENST00000469364.1,ENST00000480626.1,ENST00000461692.1,ENST00000302746.6,ENST00000474765.1	chr3	58415936:58415965:58416383:58416669:58417319:58417355,	58416384	58416669	58416616	58416616	Frame_Shift_Del	G	-	p.A119fs
LIHC	TCGA-DD-A1EG-01	PTPRG	ENST00000475012.1,ENST00000474889.1,ENST00000295874.10	chr3	62263225:62263354:62267237:62267384:62268401:62268544,	62267238	62267384	62267278	62267278	Frame_Shift_Del	C	-	p.S1269fs
LIHC	TCGA-DD-A1EG-01	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000469153.1	chr3	63820840:63820899:63820999:63821066:63821976:63822034,	63821000	63821066	63821049	63821049	Frame_Shift_Del	C	-	p.G143fs
LIHC	TCGA-DD-A1EG-01	ATXN7	ENST00000487717.1,ENST00000474112.1,ENST00000484668.1,ENST00000484332.1,ENST00000538065.1,ENST00000295900.6,ENST00000398590.3	chr3	63973874:63974000:63975851:63976050:63976413:63976535,	63975852	63976050	63976004	63976004	Frame_Shift_Del	A	-	p.E505fs
LIHC	TCGA-DD-A1EG-01	PSMD6	ENST00000492933.1,ENST00000476464.1,ENST00000482510.1,ENST00000295901.4,ENST00000394431.2	chr3	63996553:63996631:63999114:63999283:64004274:64004383,	63999115	63999283	63999246	63999246	Frame_Shift_Del	A	-	p.F341fs
LIHC	TCGA-DD-A1EG-01	ADAMTS9	ENST00000295903.4,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64600996:64601161:64601635:64601846:64606789:64606916,	64601636	64601846	64601687	64601687	Frame_Shift_Del	T	-	p.K991fs
LIHC	TCGA-DD-A1EG-01	SUCLG2	ENST00000307227.5,ENST00000492795.1,ENST00000493112.1	chr3	67546221:67546364:67548557:67548719:67559230:67559327,	67548558	67548719	67548664	67548664	Frame_Shift_Del	T	-	p.K271fs
LIHC	TCGA-DD-A1EG-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69087993:69088160:69088701:69088844:69091957:69092063,	69088702	69088844	69088741	69088741	Frame_Shift_Del	T	-	p.K599fs
LIHC	TCGA-DD-A1EG-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69087993:69088160:69088701:69088844:69091957:69092063,	69088702	69088844	69088837	69088837	Frame_Shift_Del	T	-	p.K567fs
LIHC	TCGA-DD-A1EG-01	UBA3	ENST00000349511.4,ENST00000361055.4	chr3	69112589:69112654:69120685:69120768:69124580:69124661,69117078:69117159:69120685:69120768:69126948:69127069,69117078:69117159:69120685:69120768:69124580:69124661,	69120686	69120768	69120692	69120692	Frame_Shift_Del	A	-	p.L114fs
LIHC	TCGA-DD-A1EG-01	UBA3	ENST00000465627.1,ENST00000465108.1,ENST00000349511.4,ENST00000361055.4	chr3	69120685:69120768:69124580:69124661:69126948:69127069,	69124581	69124661	69124632	69124632	Frame_Shift_Del	T	-	p.K71fs
LIHC	TCGA-DD-A1EG-01	MITF	ENST00000472437.1,ENST00000394355.2,ENST00000328528.6,ENST00000352241.4,ENST00000448226.2,ENST00000314557.6,ENST00000314589.5,ENST00000394351.3,ENST00000461014.1,ENST00000451708.1	chr3	69987107:69987200:69988248:69988332:69990386:69990482,	69988249	69988332	69988252	69988252	Frame_Shift_Del	T	-	p.F196fs
LIHC	TCGA-DD-A1EG-01	MITF	ENST00000478490.1	chr3	69987107:69987200:69988248:69988297:69990386:69990482,	69988249	69988297	69988252	69988252	Frame_Shift_Del	T	-	p.F196fs
LIHC	TCGA-DD-A1EG-01	FOXP1	ENST00000493089.1,ENST00000498215.1,ENST00000468577.1,ENST00000475937.1,ENST00000318789.4,ENST00000472382.1,ENST00000485326.2,ENST00000497553.1,ENST00000491238.1,ENST00000327590.4	chr3	71096092:71096246:71101687:71101777:71102786:71102924,	71101688	71101777	71101751	71101751	Frame_Shift_Del	T	-	p.K149fs
LIHC	TCGA-DD-A1EG-01	ROBO1	ENST00000467549.1,ENST00000495273.1	chr3	78795892:78796050:78987750:78988077:79067556:79067694,	78987751	78988077	78987936	78987936	Frame_Shift_Del	C	-	p.G66fs
LIHC	TCGA-DD-A1EG-01	CRYBG3	ENST00000182096.4	chr3	97608198:97608234:97611703:97611837:97614802:97614916,	97611704	97611837	97611778	97611778	Frame_Shift_Del	T	-	p.N557fs
LIHC	TCGA-DD-A1EG-01	CRYBG3	ENST00000182096.4	chr3	97614802:97614929:97617726:97617869:97617980:97618107,	97617727	97617869	97617838	97617838	Frame_Shift_Del	A	-	p.K657fs
LIHC	TCGA-DD-A1EG-01	ST3GAL6	ENST00000485145.1,ENST00000497621.1,ENST00000469105.1,ENST00000492254.1,ENST00000486334.2,ENST00000493953.1,ENST00000477899.1,ENST00000483910.1,ENST00000462152.1,ENST00000394162.1	chr3	98503788:98503884:98506879:98507066:98507169:98507246,	98506880	98507066	98507061	98507061	Frame_Shift_Del	A	-	p.K87fs
LIHC	TCGA-DD-A1EG-01	DCBLD2	ENST00000326840.6,ENST00000326857.9	chr3	98539091:98539132:98541071:98541205:98541512:98541585,	98541072	98541205	98541159	98541159	Frame_Shift_Del	T	-	p.N248fs
LIHC	TCGA-DD-A1EG-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000469648.1	chr3	98541512:98541585:98544158:98544210:98568304:98568442,	98544159	98544210	98544199	98544199	Frame_Shift_Del	A	-	p.C195fs
LIHC	TCGA-DD-A1EG-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000486004.1	chr3	98544177:98544210:98568304:98568442:98600383:98600611,	98568305	98568442	98568334	98568334	Frame_Shift_Del	A	-	p.L181fs
LIHC	TCGA-DD-A1EG-01	COL8A1	ENST00000261037.3,ENST00000452013.1,ENST00000273342.4	chr3	99463740:99463865:99509523:99509854:99513073:99513086,	99509524	99509854	99509629	99509629	Frame_Shift_Del	C	-	p.P35fs
LIHC	TCGA-DD-A1EG-01	NIT2	ENST00000465368.1,ENST00000480073.1,ENST00000478856.1	chr3	100053613:100053642:100057930:100058049:100058658:100058779,	100057931	100058049	100057972	100057972	Frame_Shift_Del	A	-	p.K17fs
LIHC	TCGA-DD-A1EG-01	NIT2	ENST00000480073.1,ENST00000394140.4	chr3	100059916:100060005:100065024:100065099:100067646:100067725,100064428:100064522:100065024:100065099:100067646:100067725,	100065025	100065099	100065038	100065038	Frame_Shift_Del	G	-	p.V148fs
LIHC	TCGA-DD-A1EG-01	NIT2	ENST00000465368.1	chr3	100059916:100060005:100064428:100065099:100067646:100067725,	100064429	100065099	100065038	100065038	Frame_Shift_Del	G	-	p.V148fs
LIHC	TCGA-DD-A1EG-01	ABI3BP	ENST00000383691.4,ENST00000470336.1,ENST00000495591.1,ENST00000284322.5,ENST00000487012.1,ENST00000471714.1	chr3	100484684:100484793:100489586:100489796:100493448:100493517,	100489587	100489796	100489601	100489601	Frame_Shift_Del	T	-	p.N1567fs
LIHC	TCGA-DD-A1EG-01	SENP7	ENST00000314261.7,ENST00000394094.2,ENST00000358203.3	chr3	101212716:101212812:101219913:101219963:101231934:101232028,	101219914	101219963	101219943	101219943	Frame_Shift_Del	T	-	p.R21fs
LIHC	TCGA-DD-A1EG-01	PCNP	ENST00000296024.5	chr3	101293062:101293123:101298633:101298848:101304280:101304355,	101298634	101298848	101298652	101298652	Frame_Shift_Del	A	-	p.E28fs
LIHC	TCGA-DD-A1EG-01	PCNP	ENST00000498274.1	chr3	101293062:101293123:101298432:101298848:101304280:101304355,	101298433	101298848	101298652	101298652	Frame_Shift_Del	A	-	p.E28fs
LIHC	TCGA-DD-A1EG-01	RPL24	ENST00000495401.1	chr3	101399939:101400059:101401614:101401751:101404661:101404733,	101401615	101401751	101401733	101401733	Frame_Shift_Del	T	-	p.R71fs
LIHC	TCGA-DD-A1EG-01	NXPE3	ENST00000474165.1,ENST00000477909.1,ENST00000273347.5,ENST00000491511.2	chr3	101501503:101501624:101504245:101504533:101520078:101520144,	101504246	101504533	101504452	101504452	Frame_Shift_Del	T	-	p.N4fs
LIHC	TCGA-DD-A1EG-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101525896:101525970:101535638:101535845:101540247:101541667,	101535639	101535845	101535686	101535686	Frame_Shift_Del	G	-	p.G324fs
LIHC	TCGA-DD-A1EG-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000394030.2,ENST00000403724.1	chr3	105400567:105400662:105404163:105404310:105412337:105412432,	105404164	105404310	105404175	105404175	Frame_Shift_Del	T	-	p.K730fs
LIHC	TCGA-DD-A1EG-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105422831:105423017:105438890:105439094:105452852:105452984,	105438891	105439094	105439055	105439055	Frame_Shift_Del	T	-	p.I415fs
LIHC	TCGA-DD-A1EG-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491988	107491988	Frame_Shift_Del	A	-	p.K475fs
LIHC	TCGA-DD-A1EG-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107492040	107492040	Frame_Shift_Del	A	-	p.E491fs
LIHC	TCGA-DD-A1EG-01	CD47	ENST00000398258.3,ENST00000361309.5	chr3	107765984:107766139:107768465:107768498:107769424:107769449,	107768466	107768498	107768482	107768482	Frame_Shift_Del	T	-	p.K317fs
LIHC	TCGA-DD-A1EG-01	CD47	ENST00000355354.7,ENST00000361309.5	chr3	107779591:107779699:107789939:107790029:107798837:107799191,	107789940	107790029	107789987	107789987	Frame_Shift_Del	A	-	p.F148fs
LIHC	TCGA-DD-A1EG-01	CD47	ENST00000355354.7,ENST00000361309.5	chr3	107779591:107779699:107789939:107790029:107798837:107799191,	107789940	107790029	107790005	107790005	Frame_Shift_Del	T	-	p.N142fs
LIHC	TCGA-DD-A1EG-01	MYH15	ENST00000478998.1,ENST00000273353.3	chr3	108135658:108135777:108139934:108140061:108147338:108147728,	108139935	108140061	108139958	108139958	Frame_Shift_Del	T	-	p.K1289fs
LIHC	TCGA-DD-A1EG-01	DZIP3	ENST00000463306.1,ENST00000361582.3	chr3	108403062:108403188:108405291:108405431:108406822:108406943,	108405292	108405431	108405406	108405406	Frame_Shift_Del	A	-	p.K1042fs
LIHC	TCGA-DD-A1EG-01	DPPA4	ENST00000335658.6	chr3	109046371:109046871:109047736:109047935:109049370:109049659,	109047737	109047935	109047751	109047751	Frame_Shift_Del	G	-	p.P288fs
LIHC	TCGA-DD-A1EG-01	DPPA4	ENST00000463966.1	chr3	109046371:109046871:109047736:109047928:109050580:109050631,	109047737	109047928	109047751	109047751	Frame_Shift_Del	G	-	p.P288fs
LIHC	TCGA-DD-A1EG-01	DPPA4	ENST00000335658.6	chr3	109046371:109046871:109047736:109047935:109049370:109049659,	109047737	109047935	109047779	109047779	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-DD-A1EG-01	DPPA4	ENST00000463966.1	chr3	109046371:109046871:109047736:109047928:109050580:109050631,	109047737	109047928	109047779	109047779	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-DD-A1EG-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604051	111604051	Frame_Shift_Del	T	-	p.V376fs
LIHC	TCGA-DD-A1EG-01	PHLDB2	ENST00000393925.3,ENST00000431670.2,ENST00000495180.1	chr3	111639128:111639266:111651115:111651244:111658321:111658477,	111651116	111651244	111651219	111651219	Frame_Shift_Del	A	-	p.E702fs
LIHC	TCGA-DD-A1EG-01	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000431670.2,ENST00000412622.1	chr3	111664114:111664204:111667778:111667922:111671418:111671559,	111667779	111667922	111667848	111667848	Frame_Shift_Del	T	-	p.F853fs
LIHC	TCGA-DD-A1EG-01	SLC35A5	ENST00000460713.1	chr3	112282307:112282380:112288017:112288116:112292735:112292803,	112288018	112288116	112288078	112288078	Frame_Shift_Del	T	-	p.V64fs
LIHC	TCGA-DD-A1EG-01	SLC35A5	ENST00000261034.2	chr3	112292735:112292803:112299392:112299553:112300025:112300173,	112299393	112299553	112299432	112299432	Frame_Shift_Del	T	-	p.T156fs
LIHC	TCGA-DD-A1EG-01	GTPBP8	ENST00000473129.1,ENST00000467752.1,ENST00000383678.2	chr3	112709855:112710182:112713981:112714112:112715738:112715838,112711885:112711971:112713981:112714112:112715738:112715838,	112713982	112714112	112714091	112714091	Frame_Shift_Del	C	-	p.T149fs
LIHC	TCGA-DD-A1EG-01	BOC	ENST00000355385.3,ENST00000495514.1,ENST00000273395.4	chr3	112987145:112987292:112989647:112989791:112991256:112991550,	112989648	112989791	112989744	112989744	Frame_Shift_Del	C	-	p.T207fs
LIHC	TCGA-DD-A1EG-01	BOC	ENST00000479182.1,ENST00000355385.3,ENST00000495514.1,ENST00000466059.1,ENST00000273395.4	chr3	112991256:112991550:112991915:112992188:112993221:112993529,	112991916	112992188	112991961	112991961	Frame_Shift_Del	G	-	p.W336fs
LIHC	TCGA-DD-A1EG-01	BOC	ENST00000488486.1	chr3	113003631:113003705:113004285:113004412:113005521:113005583,	113004286	113004412	113004362	113004362	Frame_Shift_Del	C	-	p.A1036fs
LIHC	TCGA-DD-A1EG-01	BOC	ENST00000479182.1,ENST00000355385.3,ENST00000495514.1,ENST00000466059.1,ENST00000273395.4	chr3	113003631:113003705:113004218:113004412:113005521:113005583,	113004219	113004412	113004362	113004362	Frame_Shift_Del	C	-	p.A1036fs
LIHC	TCGA-DD-A1EG-01	SIDT1	ENST00000463226.1,ENST00000393830.3,ENST00000264852.4	chr3	113326940:113327064:113327265:113327383:113329854:113329991,	113327266	113327383	113327329	113327329	Frame_Shift_Del	G	-	p.G556fs
LIHC	TCGA-DD-A1EG-01	NAA50	ENST00000493454.1,ENST00000493900.1,ENST00000481432.1,ENST00000497525.1,ENST00000240922.3	chr3	113440502:113440784:113441752:113441819:113442268:113442388,	113441753	113441819	113441757	113441757	Frame_Shift_Del	A	-	p.Y110fs
LIHC	TCGA-DD-A1EG-01	GRAMD1C	ENST00000452134.2,ENST00000358160.4,ENST00000479212.1	chr3	113594330:113594434:113595011:113595107:113601598:113601679,	113595012	113595107	113595026	113595026	Frame_Shift_Del	A	-	p.L126fs
LIHC	TCGA-DD-A1EG-01	GRAMD1C	ENST00000472384.1,ENST00000440446.2,ENST00000472026.1,ENST00000462838.1,ENST00000452134.2,ENST00000358160.4,ENST00000479212.1	chr3	113649560:113649679:113652357:113652500:113653278:113653303,	113652358	113652500	113652480	113652480	Frame_Shift_Del	A	-	p.S444fs
LIHC	TCGA-DD-A1EG-01	TIGIT	ENST00000481065.1,ENST00000383671.3,ENST00000486257.1	chr3	114012874:114012969:114014391:114014721:114018443:114018550,	114014392	114014721	114014549	114014549	Frame_Shift_Del	G	-	p.L140fs
LIHC	TCGA-DD-A1EG-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114070397	114070397	Frame_Shift_Del	G	-	p.A104fs
LIHC	TCGA-DD-A1EG-01	GAP43	ENST00000393780.3	chr3	115342356:115342566:115382367:115382763:115394859:115395457,	115382368	115382763	115382730	115382730	Frame_Shift_Del	T	-	p.Y35fs
LIHC	TCGA-DD-A1EG-01	UPK1B	ENST00000460625.1	chr3	118909091:118909166:118909852:118909951:118913065:118913105,	118909853	118909951	118909886	118909886	Frame_Shift_Del	C	-	p.P135fs
LIHC	TCGA-DD-A1EG-01	UPK1B	ENST00000497685.1,ENST00000494855.1,ENST00000479520.1,ENST00000264234.3	chr3	118909091:118909166:118909828:118909951:118913065:118913105,	118909829	118909951	118909886	118909886	Frame_Shift_Del	C	-	p.P135fs
LIHC	TCGA-DD-A1EG-01	UPK1B	ENST00000497685.1,ENST00000460625.1,ENST00000264234.3	chr3	118913065:118913245:118917903:118917987:118922763:118922959,	118917904	118917987	118917961	118917961	Frame_Shift_Del	T	-	p.F236fs
LIHC	TCGA-DD-A1EG-01	TIMMDC1	ENST00000486418.1	chr3	119222805:119222868:119232487:119232566:119236051:119236159,119217427:119217774:119232487:119232566:119236051:119236159,	119232488	119232566	119232564	119232564	Frame_Shift_Del	G	-	p.L198fs
LIHC	TCGA-DD-A1EG-01	ADPRH	ENST00000478927.1	chr3	119298522:119298698:119300980:119301314:119305131:119305210,	119300981	119301314	119301104	119301104	Frame_Shift_Del	G	-	p.G30fs
LIHC	TCGA-DD-A1EG-01	PLA1A	ENST00000495992.1	chr3	119316731:119316833:119325620:119325822:119327616:119327746,	119325621	119325822	119325768	119325768	Frame_Shift_Del	A	-	p.Q74fs
LIHC	TCGA-DD-A1EG-01	NR1I2	ENST00000466380.1,ENST00000337940.4,ENST00000393716.2,ENST00000493757.1	chr3	119534169:119534286:119534572:119534678:119535914:119537331,	119534573	119534678	119534627	119534627	Frame_Shift_Del	C	-	p.A370fs
LIHC	TCGA-DD-A1EG-01	HGD	ENST00000492108.1	chr3	120347212:120347376:120351993:120352175:120357301:120357428,120347212:120347376:120351993:120352175:120360435:120360540,	120351994	120352175	120352100	120352100	Frame_Shift_Del	C	-	p.G362fs
LIHC	TCGA-DD-A1EG-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000471262.1,ENST00000497029.1,ENST00000492541.1	chr3	120952462:120952535:120957817:120957965:120959286:120959354,	120957818	120957965	120957942	120957942	Frame_Shift_Del	A	-	p.K438fs
LIHC	TCGA-DD-A1EG-01	STXBP5L	ENST00000273666.6,ENST00000471262.1,ENST00000497029.1,ENST00000492541.1	chr3	120998651:120998803:121001112:121001184:121037321:121037387,	121001113	121001184	121001118	121001118	Frame_Shift_Del	T	-	p.F706fs
LIHC	TCGA-DD-A1EG-01	POLQ	ENST00000264233.5	chr3	121168161:121168273:121178896:121179081:121186365:121186487,	121178897	121179081	121178973	121178973	Frame_Shift_Del	A	-	p.F2359fs
LIHC	TCGA-DD-A1EG-01	POLQ	ENST00000264233.5	chr3	121200418:121200659:121202232:121202429:121203887:121204031,	121202233	121202429	121202381	121202381	Frame_Shift_Del	A	-	p.L1941fs
LIHC	TCGA-DD-A1EG-01	POLQ	ENST00000264233.5,ENST00000488282.1	chr3	121240849:121240996:121248491:121248639:121251836:121252056,	121248492	121248639	121248570	121248570	Frame_Shift_Del	A	-	p.C344fs
LIHC	TCGA-DD-A1EG-01	HCLS1	ENST00000495491.1,ENST00000314583.3,ENST00000481314.1,ENST00000428394.2,ENST00000487290.1	chr3	121363664:121363775:121366165:121366295:121376125:121376199,	121366166	121366295	121366247	121366247	Frame_Shift_Del	C	-	p.R69fs
LIHC	TCGA-DD-A1EG-01	HCLS1	ENST00000497391.1	chr3	121363664:121363775:121366165:121366329:121376125:121376199,	121366166	121366329	121366247	121366247	Frame_Shift_Del	C	-	p.R69fs
LIHC	TCGA-DD-A1EG-01	GOLGB1	ENST00000393667.3,ENST00000482512.1,ENST00000491690.1,ENST00000340645.5	chr3	121383376:121383461:121383772:121383878:121386322:121386457,	121383773	121383878	121383781	121383781	Frame_Shift_Del	A	-	p.C3223fs
LIHC	TCGA-DD-A1EG-01	SLC15A2	ENST00000489886.1,ENST00000489711.1,ENST00000295605.2	chr3	121641066:121641149:121641621:121641708:121641886:121641976,	121641622	121641708	121641648	121641648	Frame_Shift_Del	C	-	p.N269fs
LIHC	TCGA-DD-A1EG-01	ILDR1	ENST00000344209.5,ENST00000393631.1,ENST00000460554.1	chr3	121724090:121724240:121725837:121726008:121740866:121740969,	121725838	121726008	121725860	121725860	Frame_Shift_Del	A	-	p.P69fs
LIHC	TCGA-DD-A1EG-01	CASR	ENST00000490131.1,ENST00000498619.1,ENST00000296154.5	chr3	121973177:121973221:121975927:121976234:121980374:121981259,	121975928	121976234	121976034	121976034	Frame_Shift_Del	T	-	p.F98fs
LIHC	TCGA-DD-A1EG-01	CASR	ENST00000490131.1,ENST00000498619.1,ENST00000296154.5	chr3	121973177:121973221:121975927:121976234:121980374:121981259,	121975928	121976234	121976097	121976097	Frame_Shift_Del	A	-	p.K119fs
LIHC	TCGA-DD-A1EG-01	KPNA1	ENST00000494339.1	chr3	122186168:122186276:122215283:122215417:122233603:122233775,	122215284	122215417	122215323	122215323	Frame_Shift_Del	T	-	p.E31fs
LIHC	TCGA-DD-A1EG-01	DTX3L	ENST00000383661.3	chr3	122283273:122283460:122284705:122284917:122289301:122289519,	122284706	122284917	122284754	122284754	Frame_Shift_Del	A	-	p.E79fs
LIHC	TCGA-DD-A1EG-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418407	122418407	Frame_Shift_Del	A	-	p.K337fs
LIHC	TCGA-DD-A1EG-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122419686	122419686	Frame_Shift_Del	A	-	p.Q762fs
LIHC	TCGA-DD-A1EG-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122420412	122420412	Frame_Shift_Del	A	-	p.E1004fs
LIHC	TCGA-DD-A1EG-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122422588:122422825:122423373:122423595:122427036:122427115,	122423374	122423595	122423544	122423544	Frame_Shift_Del	T	-	p.T1163fs
LIHC	TCGA-DD-A1EG-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122432270:122432420:122432718:122432781:122433108:122433276,	122432719	122432781	122432734	122432734	Frame_Shift_Del	T	-	p.I1262fs
LIHC	TCGA-DD-A1EG-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437265	122437265	Frame_Shift_Del	A	-	p.K1423fs
LIHC	TCGA-DD-A1EG-01	HSPBAP1	ENST00000383659.1	chr3	122471437:122471521:122474106:122474278:122477618:122477700,	122474107	122474278	122474223	122474223	Frame_Shift_Del	T	-	p.I209fs
LIHC	TCGA-DD-A1EG-01	HSPBAP1	ENST00000383659.1	chr3	122471437:122471521:122474106:122474278:122477618:122477700,	122474107	122474278	122474235	122474235	Frame_Shift_Del	A	-	p.Y205fs
LIHC	TCGA-DD-A1EG-01	PDIA5	ENST00000316218.7	chr3	122843118:122843190:122849326:122849463:122864368:122864439,	122849327	122849463	122849458	122849458	Frame_Shift_Del	C	-	p.A302fs
LIHC	TCGA-DD-A1EG-01	CCDC14	ENST00000438440.2,ENST00000488653.2,ENST00000433542.2,ENST00000409697.3	chr3	123674923:123674962:123675201:123675274:123675586:123675642,	123675202	123675274	123675247	123675247	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-DD-A1EG-01	CCDC14	ENST00000495381.1	chr3	123667792:123667979:123674689:123675642:123679990:123680055,	123674690	123675642	123675247	123675247	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-DD-A1EG-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124456663	124456663	Frame_Shift_Del	A	-	p.K188fs
LIHC	TCGA-DD-A1EG-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124456663	124456663	Frame_Shift_Del	A	-	p.K188fs
LIHC	TCGA-DD-A1EG-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124457016	124457016	Frame_Shift_Del	C	-	p.C304fs
LIHC	TCGA-DD-A1EG-01	UMPS	ENST00000474588.1	chr3	124453939:124454093:124456761:124457086:124458870:124459046,	124456762	124457086	124457016	124457016	Frame_Shift_Del	C	-	p.C304fs
LIHC	TCGA-DD-A1EG-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124457016	124457016	Frame_Shift_Del	C	-	p.C304fs
LIHC	TCGA-DD-A1EG-01	ITGB5	ENST00000296181.4	chr3	124515437:124515664:124536467:124536557:124538585:124538681,124527868:124528003:124536467:124536557:124538585:124538681,	124536468	124536557	124536517	124536517	Frame_Shift_Del	A	-	p.L360fs
LIHC	TCGA-DD-A1EG-01	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1	chr3	124810944:124811042:124826324:124826970:124829032:124829179,	124826325	124826970	124826875	124826875	Frame_Shift_Del	G	-	p.P414fs
LIHC	TCGA-DD-A1EG-01	SNX4	ENST00000536067.1,ENST00000251775.4,ENST00000471751.1	chr3	125199090:125199163:125208251:125208307:125216184:125216232,	125208252	125208307	125208261	125208261	Frame_Shift_Del	T	-	p.N215fs
LIHC	TCGA-DD-A1EG-01	SNX4	ENST00000473417.1	chr3	125216902:125217038:125223466:125223588:125238875:125239025,	125223467	125223588	125223543	125223543	Frame_Shift_Del	A	-	p.S63fs
LIHC	TCGA-DD-A1EG-01	SLC41A3	ENST00000315891.6,ENST00000512557.1,ENST00000346785.5	chr3	125725215:125725407:125725956:125726068:125727574:125727723,	125725957	125726068	125725966	125725966	Frame_Shift_Del	C	-	p.D427fs
LIHC	TCGA-DD-A1EG-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000452905.2,ENST00000393434.2	chr3	125831624:125831723:125833399:125833499:125836847:125836941,	125833400	125833499	125833444	125833444	Frame_Shift_Del	G	-	p.L680fs
LIHC	TCGA-DD-A1EG-01	ALDH1L1	ENST00000472186.1,ENST00000473607.1,ENST00000273450.3,ENST00000452905.2,ENST00000476245.1,ENST00000393431.2,ENST00000393434.2	chr3	125855606:125855726:125856655:125856803:125865677:125865769,	125856656	125856803	125856724	125856724	Frame_Shift_Del	C	-	p.D386fs
LIHC	TCGA-DD-A1EG-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000490367.1,ENST00000393431.2,ENST00000393434.2,ENST00000488356.1,ENST00000460368.1	chr3	125876242:125876351:125877247:125877482:125879695:125879845,	125877248	125877482	125877378	125877378	Frame_Shift_Del	C	-	p.A78fs
LIHC	TCGA-DD-A1EG-01	ZXDC	ENST00000515545.1,ENST00000389709.3,ENST00000336332.5	chr3	126180925:126181063:126184997:126185168:126189737:126189868,	126184998	126185168	126185153	126185153	Frame_Shift_Del	A	-	p.F429fs
LIHC	TCGA-DD-A1EG-01	UROC1	ENST00000290868.2,ENST00000383579.3	chr3	126202211:126202311:126207040:126207122:126208118:126208218,	126207041	126207122	126207098	126207098	Frame_Shift_Del	C	-	p.G578fs
LIHC	TCGA-DD-A1EG-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126710226:126710409:126722172:126722313:126723453:126723554,	126722173	126722313	126722190	126722190	Frame_Shift_Del	A	-	p.S465fs
LIHC	TCGA-DD-A1EG-01	MGLL	ENST00000479967.1,ENST00000453507.2,ENST00000434178.2,ENST00000265052.5,ENST00000398104.1	chr3	127441392:127441409:127500631:127500738:127540536:127540681,	127500632	127500738	127500641	127500641	Frame_Shift_Del	G	-	p.H75fs
LIHC	TCGA-DD-A1EG-01	MGLL	ENST00000479967.1,ENST00000453507.2,ENST00000434178.2,ENST00000265052.5,ENST00000398104.1	chr3	127441392:127441409:127500631:127500738:127540536:127540681,	127500632	127500738	127500663	127500663	Frame_Shift_Del	C	-	p.G67fs
LIHC	TCGA-DD-A1EG-01	RUVBL1	ENST00000464873.1,ENST00000417360.1,ENST00000472125.1,ENST00000322623.5	chr3	127817724:127817788:127819437:127819587:127820401:127820462,	127819438	127819587	127819561	127819561	Frame_Shift_Del	G	-	p.A150fs
LIHC	TCGA-DD-A1EG-01	EEFSEC	ENST00000483457.1	chr3	127965678:127965886:127980970:127981067:128060075:128060351,	127980971	127981067	127981024	127981024	Frame_Shift_Del	C	-	p.A193fs
LIHC	TCGA-DD-A1EG-01	EEFSEC	ENST00000254730.6	chr3	127983459:127983624:128060075:128060732:128077059:128077216,	128060076	128060732	128060203	128060203	Frame_Shift_Del	C	-	p.A305fs
LIHC	TCGA-DD-A1EG-01	ACAD9	ENST00000308982.7,ENST00000514336.1,ENST00000512801.1,ENST00000505867.1,ENST00000511227.1,ENST00000514643.1,ENST00000505192.1	chr3	128612397:128612499:128614152:128614259:128615278:128615309,	128614153	128614259	128614212	128614212	Frame_Shift_Del	G	-	p.G136fs
LIHC	TCGA-DD-A1EG-01	EFCC1	ENST00000436022.2,ENST00000481536.1,ENST00000480450.1	chr3	128751664:128751809:128753006:128753172:128755819:128755960,	128753007	128753172	128753082	128753082	Frame_Shift_Del	G	-	p.L16fs
LIHC	TCGA-DD-A1EG-01	COPG1	ENST00000504547.1,ENST00000314797.6,ENST00000515725.1	chr3	128979461:128979650:128982746:128982842:128984391:128984518,	128982747	128982842	128982783	128982783	Frame_Shift_Del	A	-	p.K389fs
LIHC	TCGA-DD-A1EG-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155502	129155502	Frame_Shift_Del	T	-	p.T329fs
LIHC	TCGA-DD-A1EG-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155502	129155502	Frame_Shift_Del	T	-	p.T329fs
LIHC	TCGA-DD-A1EG-01	TMCC1	ENST00000393238.3	chr3	129390091:129390107:129546645:129547351:129551616:129551669,	129546646	129547351	129546824	129546824	Frame_Shift_Del	C	-	p.G133fs
LIHC	TCGA-DD-A1EG-01	TMCC1	ENST00000426664.2,ENST00000505616.1	chr3	129390091:129390107:129546645:129546920:129551616:129551669,	129546646	129546920	129546824	129546824	Frame_Shift_Del	C	-	p.G133fs
LIHC	TCGA-DD-A1EG-01	COL6A5	ENST00000265379.6,ENST00000432398.2,ENST00000312481.7	chr3	130134488:130134551:130135600:130135663:130137712:130137775,	130135601	130135663	130135658	130135658	Frame_Shift_Del	A	-	p.K1629fs
LIHC	TCGA-DD-A1EG-01	COL6A6	ENST00000358511.6	chr3	130363834:130363846:130367912:130368406:130377519:130377616,	130367913	130368406	130367926	130367926	Frame_Shift_Del	C	-	p.C1751fs
LIHC	TCGA-DD-A1EG-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743653	130743653	Frame_Shift_Del	A	-	p.F166fs
LIHC	TCGA-DD-A1EG-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743661	130743661	Frame_Shift_Del	A	-	p.C164fs
LIHC	TCGA-DD-A1EG-01	NEK11	ENST00000510769.1	chr3	130852673:130852800:130881251:130881371:130884269:130884363,	130881252	130881371	130881254	130881254	Frame_Shift_Del	A	-	p.Q322fs
LIHC	TCGA-DD-A1EG-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131300422:131300509:131306327:131306426:131388518:131388608,	131306328	131306426	131306398	131306398	Frame_Shift_Del	C	-	p.G237fs
LIHC	TCGA-DD-A1EG-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131388518:131388608:131404718:131404802:131415385:131415460,	131404719	131404802	131404764	131404764	Frame_Shift_Del	A	-	p.F182fs
LIHC	TCGA-DD-A1EG-01	ACPP	ENST00000475741.1,ENST00000336375.5,ENST00000351273.7,ENST00000489084.1,ENST00000493235.1,ENST00000483689.1	chr3	132047167:132047206:132050490:132050577:132051035:132051188,	132050491	132050577	132050532	132050532	Frame_Shift_Del	A	-	p.R86fs
LIHC	TCGA-DD-A1EG-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132172442:132172538:132172909:132173001:132175078:132175245,	132172910	132173001	132172947	132172947	Frame_Shift_Del	T	-	p.L293fs
LIHC	TCGA-DD-A1EG-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132184838:132184914:132185142:132185238:132186013:132186157,	132185143	132185238	132185227	132185227	Frame_Shift_Del	A	-	p.K685fs
LIHC	TCGA-DD-A1EG-01	DNAJC13	ENST00000260818.6	chr3	132222057:132222225:132224145:132224259:132226080:132226197,	132224146	132224259	132224243	132224243	Frame_Shift_Del	A	-	p.E1661fs
LIHC	TCGA-DD-A1EG-01	DNAJC13	ENST00000260818.6	chr3	132222057:132222225:132224145:132224259:132226080:132226197,	132224146	132224259	132224254	132224254	Frame_Shift_Del	A	-	p.K1666fs
LIHC	TCGA-DD-A1EG-01	UBA5	ENST00000468227.1,ENST00000264991.4,ENST00000494112.1,ENST00000356232.4,ENST00000494238.2	chr3	132394449:132394524:132394660:132394767:132395286:132395597,	132394661	132394767	132394761	132394761	Frame_Shift_Del	A	-	p.P375fs
LIHC	TCGA-DD-A1EG-01	NPHP3	ENST00000474871.1	chr3	132402242:132402368:132403397:132405231:132405994:132406070,	132403398	132405231	132405134	132405134	Frame_Shift_Del	C	-	p.G1100fs
LIHC	TCGA-DD-A1EG-01	NPHP3	ENST00000326682.8,ENST00000337331.5,ENST00000469232.1,ENST00000343113.4	chr3	132437837:132437988:132438548:132438674:132440806:132440851,	132438549	132438674	132438585	132438585	Frame_Shift_Del	A	-	p.F161fs
LIHC	TCGA-DD-A1EG-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133098691	133098691	Frame_Shift_Del	C	-	p.P47fs
LIHC	TCGA-DD-A1EG-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099539	133099539	Frame_Shift_Del	C	-	p.G328fs
LIHC	TCGA-DD-A1EG-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099911	133099911	Frame_Shift_Del	G	-	p.E452fs
LIHC	TCGA-DD-A1EG-01	TOPBP1	ENST00000260810.5	chr3	133336003:133336170:133337056:133337277:133338998:133339191,	133337057	133337277	133337167	133337167	Frame_Shift_Del	A	-	p.L1161fs
LIHC	TCGA-DD-A1EG-01	TOPBP1	ENST00000260810.5	chr3	133336003:133336170:133337056:133337277:133338998:133339191,	133337057	133337277	133337230	133337230	Frame_Shift_Del	T	-	p.N1140fs
LIHC	TCGA-DD-A1EG-01	TOPBP1	ENST00000260810.5	chr3	133377859:133377994:133379887:133379978:133380612:133380737,	133379888	133379978	133379900	133379900	Frame_Shift_Del	A	-	p.F24fs
LIHC	TCGA-DD-A1EG-01	RYK	ENST00000296084.4,ENST00000472234.1,ENST00000427044.2,ENST00000460933.1	chr3	133894777:133894883:133896784:133896917:133901845:133901877,	133896785	133896917	133896873	133896873	Frame_Shift_Del	T	-	p.K217fs
LIHC	TCGA-DD-A1EG-01	EPHB1	ENST00000398015.3	chr3	134644657:134644722:134670212:134670894:134825289:134825445,	134670213	134670894	134670723	134670723	Frame_Shift_Del	G	-	p.G212fs
LIHC	TCGA-DD-A1EG-01	EPHB1	ENST00000398015.3	chr3	134644657:134644722:134670212:134670894:134825289:134825445,	134670213	134670894	134670819	134670819	Frame_Shift_Del	G	-	p.G244fs
LIHC	TCGA-DD-A1EG-01	PCCB	ENST00000465176.1,ENST00000459873.1,ENST00000478469.1,ENST00000484181.1,ENST00000251654.4,ENST00000475214.1,ENST00000466072.1,ENST00000462542.1,ENST00000465423.1,ENST00000494742.1,ENST00000471595.1	chr3	135975396:135975465:135979320:135979377:135980793:135980852,	135979321	135979377	135979364	135979364	Frame_Shift_Del	A	-	p.Q139fs
LIHC	TCGA-DD-A1EG-01	IL20RB	ENST00000469964.1,ENST00000309741.5	chr3	136676850:136677043:136699172:136699434:136701001:136701192,	136699173	136699434	136699329	136699329	Frame_Shift_Del	C	-	p.A37fs
LIHC	TCGA-DD-A1EG-01	IL20RB	ENST00000329582.4	chr3	136676850:136677043:136699307:136699434:136701001:136701192,	136699308	136699434	136699329	136699329	Frame_Shift_Del	C	-	p.A37fs
LIHC	TCGA-DD-A1EG-01	IL20RB	ENST00000329582.4,ENST00000475972.1,ENST00000491483.1	chr3	136708282:136708407:136710779:136710930:136714255:136714348,	136710780	136710930	136710804	136710804	Frame_Shift_Del	G	-	p.G187fs
LIHC	TCGA-DD-A1EG-01	NME9	ENST00000536478.1,ENST00000333911.3,ENST00000317876.4,ENST00000341790.5,ENST00000383180.2,ENST00000484930.1	chr3	138022348:138022485:138023714:138023869:138024845:138024938,	138023715	138023869	138023752	138023752	Frame_Shift_Del	G	-	p.R191fs
LIHC	TCGA-DD-A1EG-01	MRAS	ENST00000464896.1,ENST00000289104.4,ENST00000494949.1,ENST00000474559.1,ENST00000423968.2	chr3	138117310:138117410:138119375:138119455:138121011:138121034,	138119376	138119455	138119405	138119405	Frame_Shift_Del	C	-	p.D159fs
LIHC	TCGA-DD-A1EG-01	ATP1B3	ENST00000462082.1	chr3	141595696:141595752:141622461:141622590:141626008:141626116,141595696:141595752:141622461:141622590:141644372:141644485,	141622462	141622590	141622486	141622486	Frame_Shift_Del	T	-	p.V31fs
LIHC	TCGA-DD-A1EG-01	GK5	ENST00000492097.1,ENST00000392993.2,ENST00000460544.1,ENST00000480757.1,ENST00000544571.1	chr3	141906545:141906621:141917643:141917775:141923536:141923630,	141917644	141917775	141917719	141917719	Frame_Shift_Del	A	-	p.F156fs
LIHC	TCGA-DD-A1EG-01	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142037631:142037745:142048275:142048457:142051216:142051266,	142048276	142048457	142048378	142048378	Frame_Shift_Del	G	-	p.P1433fs
LIHC	TCGA-DD-A1EG-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142211973:142212153:142215202:142215362:142215854:142216034,	142215203	142215362	142215226	142215226	Frame_Shift_Del	T	-	p.R1959fs
LIHC	TCGA-DD-A1EG-01	ATR	ENST00000507148.1	chr3	142280084:142280263:142281073:142281190:142284962:142285103,	142281074	142281190	142281118	142281118	Frame_Shift_Del	A	-	p.C376fs
LIHC	TCGA-DD-A1EG-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281118	142281118	Frame_Shift_Del	A	-	p.C376fs
LIHC	TCGA-DD-A1EG-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281476	142281476	Frame_Shift_Del	A	-	p.F256fs
LIHC	TCGA-DD-A1EG-01	PCOLCE2	ENST00000480473.1,ENST00000470795.1,ENST00000295992.3	chr3	142539808:142539887:142542373:142542457:142548533:142548573,	142542374	142542457	142542397	142542397	Frame_Shift_Del	C	-	p.G309fs
LIHC	TCGA-DD-A1EG-01	U2SURP	ENST00000488497.3,ENST00000480029.1,ENST00000493598.2,ENST00000467348.1,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142761963:142762118:142769780:142769891:142772517:142772624,	142769781	142769891	142769829	142769829	Frame_Shift_Del	A	-	p.K457fs
LIHC	TCGA-DD-A1EG-01	U2SURP	ENST00000488497.3,ENST00000493598.2,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142772517:142772636:142773784:142773961:142775153:142775342,	142773785	142773961	142773894	142773894	Frame_Shift_Del	A	-	p.K553fs
LIHC	TCGA-DD-A1EG-01	U2SURP	ENST00000488497.3,ENST00000493598.2,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142772517:142772636:142773784:142773961:142775153:142775342,	142773785	142773961	142773948	142773948	Frame_Shift_Del	A	-	p.K572fs
LIHC	TCGA-DD-A1EG-01	PLOD2	ENST00000282903.5,ENST00000461497.1,ENST00000494950.1	chr3	145791073:145791139:145794568:145794682:145796902:145797044,145791073:145791139:145794568:145794682:145795648:145795711,	145794569	145794682	145794581	145794581	Frame_Shift_Del	A	-	p.F555fs
LIHC	TCGA-DD-A1EG-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1	chr3	145804573:145804695:145806372:145806498:145809586:145809688,	145806373	145806498	145806452	145806452	Frame_Shift_Del	G	-	p.P309fs
LIHC	TCGA-DD-A1EG-01	PLSCR4	ENST00000383083.2,ENST00000460885.1,ENST00000433593.2	chr3	145914492:145914580:145924312:145924548:145938601:145938712,	145924313	145924548	145924338	145924338	Frame_Shift_Del	G	-	p.P111fs
LIHC	TCGA-DD-A1EG-01	PLSCR4	ENST00000433593.2	chr3	145924373:145924548:145938601:145938712:145968746:145968866,	145938602	145938712	145938667	145938667	Frame_Shift_Del	T	-	p.N18fs
LIHC	TCGA-DD-A1EG-01	PLSCR1	ENST00000483300.1	chr3	146234944:146234954:146239330:146239488:146243391:146243434,	146239331	146239488	146239381	146239381	Frame_Shift_Del	T	-	p.I230fs
LIHC	TCGA-DD-A1EG-01	PLSCR1	ENST00000462666.1,ENST00000487389.1,ENST00000478267.1,ENST00000472349.1,ENST00000486631.1,ENST00000468985.1,ENST00000342435.4,ENST00000448787.2	chr3	146234944:146234954:146239330:146239492:146243391:146243434,146234944:146234954:146239330:146239492:146239619:146239768,	146239331	146239492	146239381	146239381	Frame_Shift_Del	T	-	p.I230fs
LIHC	TCGA-DD-A1EG-01	PLSCR1	ENST00000489775.1	chr3	146234944:146234954:146239330:146239840:146243391:146243434,	146239331	146239840	146239381	146239381	Frame_Shift_Del	T	-	p.I230fs
LIHC	TCGA-DD-A1EG-01	ZIC4	ENST00000525172.2,ENST00000473123.1,ENST00000484399.1,ENST00000425731.3,ENST00000383075.3	chr3	147108717:147109033:147113638:147114256:147120514:147120599,	147113639	147114256	147114044	147114044	Frame_Shift_Del	G	-	p.L95fs
LIHC	TCGA-DD-A1EG-01	HLTF	ENST00000392912.2,ENST00000467858.1,ENST00000494055.1,ENST00000310053.5,ENST00000465259.1	chr3	148759952:148760077:148763866:148764046:148765814:148765950,	148763867	148764046	148763980	148763980	Frame_Shift_Del	T	-	p.K653fs
LIHC	TCGA-DD-A1EG-01	HPS3	ENST00000486530.1	chr3	148847477:148847727:148857790:148858285:148858803:148858975,	148857791	148858285	148857977	148857977	Frame_Shift_Del	C	-	p.A135fs
LIHC	TCGA-DD-A1EG-01	HPS3	ENST00000486530.1	chr3	148847477:148847727:148857790:148858285:148858803:148858975,	148857791	148858285	148858219	148858219	Frame_Shift_Del	A	-	p.K216fs
LIHC	TCGA-DD-A1EG-01	ANKUB1	ENST00000446160.1,ENST00000462519.2,ENST00000383050.3	chr3	149488346:149488461:149498025:149498242:149508567:149508683,	149498026	149498242	149498082	149498082	Frame_Shift_Del	G	-	p.P132fs
LIHC	TCGA-DD-A1EG-01	RNF13	ENST00000474348.1,ENST00000361785.6,ENST00000482083.3,ENST00000467977.1,ENST00000491086.1	chr3	149613259:149613347:149619858:149619949:149629764:149629870,149613259:149613357:149619858:149619949:149629764:149629870,	149619859	149619949	149619885	149619885	Frame_Shift_Del	C	-	p.P146fs
LIHC	TCGA-DD-A1EG-01	SERP1	ENST00000479209.1	chr3	150262099:150262285:150263489:150263565:150263838:150264286,	150263490	150263565	150263506	150263506	Frame_Shift_Del	A	-	p.F48fs
LIHC	TCGA-DD-A1EG-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150299404:150299533:150300986:150301052,150293435:150293549:150299404:150299533:150300986:150301052,	150299405	150299533	150299510	150299510	Frame_Shift_Del	A	-	p.K536fs
LIHC	TCGA-DD-A1EG-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877708	150877708	Frame_Shift_Del	C	-	p.S309fs
LIHC	TCGA-DD-A1EG-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877786	150877786	Frame_Shift_Del	C	-	p.G335fs
LIHC	TCGA-DD-A1EG-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877853	150877853	Frame_Shift_Del	G	-	p.G358fs
LIHC	TCGA-DD-A1EG-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877856	150877856	Frame_Shift_Del	C	-	p.P359fs
LIHC	TCGA-DD-A1EG-01	MBNL1	ENST00000485910.1,ENST00000282488.7,ENST00000355460.2	chr3	152163070:152163328:152165408:152165562:152173330:152173366,152163070:152163328:152165408:152165562:152177059:152177091,152163070:152163328:152165408:152165562:152174055:152174150,	152165409	152165562	152165441	152165441	Frame_Shift_Del	A	-	p.P298fs
LIHC	TCGA-DD-A1EG-01	MBNL1	ENST00000485509.1,ENST00000324196.5	chr3	152174055:152174150:152175918:152175982:152177059:152177091,	152175919	152175982	152175976	152175976	Frame_Shift_Del	A	-	p.G320fs
LIHC	TCGA-DD-A1EG-01	ARHGEF26	ENST00000496710.1,ENST00000356448.4,ENST00000465093.1	chr3	153912432:153912507:153935657:153935747:153943644:153943799,	153935658	153935747	153935739	153935739	Frame_Shift_Del	A	-	p.K643fs
LIHC	TCGA-DD-A1EG-01	DHX36	ENST00000481941.1,ENST00000496811.1,ENST00000544526.1,ENST00000329463.5,ENST00000308361.6	chr3	154018382:154018485:154018775:154018916:154021117:154021199,	154018776	154018916	154018898	154018898	Frame_Shift_Del	T	-	p.K412fs
LIHC	TCGA-DD-A1EG-01	MME	ENST00000462745.1,ENST00000492661.1,ENST00000493237.1,ENST00000360490.2,ENST00000460393.1	chr3	154886520:154886586:154889905:154890001:154890324:154890401,	154889906	154890001	154889940	154889940	Frame_Shift_Del	A	-	p.E672fs
LIHC	TCGA-DD-A1EG-01	SSR3	ENST00000467733.1,ENST00000476217.1,ENST00000467789.1	chr3	156266693:156266792:156271443:156271570:156272745:156272906,	156271444	156271570	156271505	156271505	Frame_Shift_Del	G	-	p.L67fs
LIHC	TCGA-DD-A1EG-01	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156396250	156396250	Frame_Shift_Del	G	-	p.R255fs
LIHC	TCGA-DD-A1EG-01	SMC4	ENST00000465563.1,ENST00000469858.1,ENST00000344722.5,ENST00000489573.1,ENST00000462787.1,ENST00000360111.2,ENST00000497984.1,ENST00000357388.3,ENST00000469762.1	chr3	160129707:160129765:160130113:160130241:160131260:160131272,160129809:160129872:160130113:160130241:160130317:160130637,160129809:160129872:160130113:160130241:160131260:160131272,	160130114	160130241	160130165	160130165	Frame_Shift_Del	A	-	p.K302fs
LIHC	TCGA-DD-A1EG-01	SMC4	ENST00000468653.1	chr3	160129809:160129872:160130113:160130637:160131260:160131272,	160130114	160130637	160130165	160130165	Frame_Shift_Del	A	-	p.K302fs
LIHC	TCGA-DD-A1EG-01	KPNA4	ENST00000334256.4	chr3	160222745:160222840:160225894:160226057:160227587:160227659,	160225895	160226057	160225946	160225946	Frame_Shift_Del	T	-	p.M441fs
LIHC	TCGA-DD-A1EG-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547320	165547320	Frame_Shift_Del	T	-	p.N501fs
LIHC	TCGA-DD-A1EG-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548429	165548429	Frame_Shift_Del	T	-	p.K131fs
LIHC	TCGA-DD-A1EG-01	WDR49	ENST00000493061.1	chr3	167240119:167240272:167246839:167247027:167248902:167248977,	167246840	167247027	167246980	167246980	Frame_Shift_Del	A	-	p.W404fs
LIHC	TCGA-DD-A1EG-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514647	169514647	Frame_Shift_Del	T	-	p.N233fs
LIHC	TCGA-DD-A1EG-01	PRKCI	ENST00000476635.1,ENST00000485837.1,ENST00000295797.4	chr3	170013698:170013778:170015091:170015181:170016782:170016898,	170015092	170015181	170015109	170015109	Frame_Shift_Del	G	-	p.L505fs
LIHC	TCGA-DD-A1EG-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078207	170078207	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-DD-A1EG-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078515	170078515	Frame_Shift_Del	C	-	p.G132fs
LIHC	TCGA-DD-A1EG-01	EIF5A2	ENST00000295822.2	chr3	170611137:170611208:170612080:170612212:170624777:170624882,	170612081	170612212	170612105	170612105	Frame_Shift_Del	T	-	p.K126fs
LIHC	TCGA-DD-A1EG-01	EIF5A2	ENST00000474096.1	chr3	170611137:170611208:170612080:170612172:170624777:170624882,	170612081	170612172	170612105	170612105	Frame_Shift_Del	T	-	p.K126fs
LIHC	TCGA-DD-A1EG-01	TNIK	ENST00000284483.8,ENST00000470834.1,ENST00000369326.5,ENST00000436636.2,ENST00000357327.5	chr3	170843700:170843940:170846502:170846667:170855979:170856168,	170846503	170846667	170846630	170846630	Frame_Shift_Del	G	-	p.P549fs
LIHC	TCGA-DD-A1EG-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5	chr3	171395355:171395484:171406465:171406666:171410121:171410232,171405160:171405374:171406465:171406666:171410121:171410232,	171406466	171406666	171406568	171406568	Frame_Shift_Del	C	-	p.G479fs
LIHC	TCGA-DD-A1EG-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000418087.1,ENST00000475273.2,ENST00000356327.5,ENST00000342215.6,ENST00000498278.1	chr3	171453281:171453427:171455321:171455449:171455681:171455872,	171455322	171455449	171455364	171455364	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A1EG-01	FNDC3B	ENST00000469491.1,ENST00000415807.2,ENST00000416957.1,ENST00000336824.4	chr3	171830241:171830380:171851260:171851336:171944660:171944737,	171851261	171851336	171851274	171851274	Frame_Shift_Del	A	-	p.Q42fs
LIHC	TCGA-DD-A1EG-01	FNDC3B	ENST00000469491.1,ENST00000415807.2,ENST00000443501.1,ENST00000416957.1,ENST00000336824.4	chr3	171944660:171944737:171965322:171965566:171969049:171969246,	171965323	171965566	171965397	171965397	Frame_Shift_Del	C	-	p.Y113fs
LIHC	TCGA-DD-A1EG-01	TNFSF10	ENST00000430881.1	chr3	172223451:172224709:172232650:172232788:172241042:172241100,172229406:172229449:172232650:172232788:172241042:172241100,172227006:172227111:172232650:172232788:172241042:172241100,	172232651	172232788	172232720	172232720	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A1EG-01	MFN1	ENST00000357390.4	chr3	179085823:179085891:179093007:179093129:179094829:179094956,179085823:179085891:179093007:179093129:179095131:179095220,	179093008	179093129	179093086	179093086	Frame_Shift_Del	A	-	p.K352fs
LIHC	TCGA-DD-A1EG-01	MFN1	ENST00000263969.5,ENST00000471841.1,ENST00000474903.1,ENST00000280653.7	chr3	179093007:179093129:179094829:179094956:179095131:179095220,	179094830	179094956	179094918	179094918	Frame_Shift_Del	A	-	p.K397fs
LIHC	TCGA-DD-A1EG-01	MFN1	ENST00000480636.1	chr3	179095131:179095236:179096128:179096602:179103356:179103509,	179096129	179096602	179096565	179096565	Frame_Shift_Del	A	-	p.Q542fs
LIHC	TCGA-DD-A1EG-01	GNB4	ENST00000232564.3,ENST00000468623.1	chr3	179118874:179119107:179122977:179123194:179131199:179131401,	179122978	179123194	179123048	179123048	Frame_Shift_Del	C	-	p.G282fs
LIHC	TCGA-DD-A1EG-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408081	179408081	Frame_Shift_Del	T	-	p.I116fs
LIHC	TCGA-DD-A1EG-01	USP13	ENST00000263966.3,ENST00000496897.1,ENST00000497155.1	chr3	179462830:179463005:179470072:179470161:179472519:179472642,	179470073	179470161	179470152	179470152	Frame_Shift_Del	A	-	p.K598fs
LIHC	TCGA-DD-A1EG-01	USP13	ENST00000263966.3,ENST00000496897.1	chr3	179481789:179481956:179483482:179483636:179499526:179499611,	179483483	179483636	179483516	179483516	Frame_Shift_Del	T	-	p.F765fs
LIHC	TCGA-DD-A1EG-01	PEX5L	ENST00000263962.8,ENST00000465751.1,ENST00000476138.1,ENST00000467460.1,ENST00000463761.1	chr3	179597753:179597911:179605460:179605572:179615929:179615998,	179605461	179605572	179605551	179605551	Frame_Shift_Del	T	-	p.S74fs
LIHC	TCGA-DD-A1EG-01	PEX5L	ENST00000476138.1,ENST00000467460.1,ENST00000464614.1,ENST00000463761.1	chr3	179605460:179605572:179615929:179616034:179754366:179754558,179605460:179605572:179615929:179616034:179689381:179689448,	179615930	179616034	179615950	179615950	Frame_Shift_Del	G	-	p.L61fs
LIHC	TCGA-DD-A1EG-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180332783:180332865:180334068:180334151:180334303:180334405,	180334069	180334151	180334106	180334106	Frame_Shift_Del	T	-	p.S879fs
LIHC	TCGA-DD-A1EG-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372636	180372636	Frame_Shift_Del	T	-	p.R366fs
LIHC	TCGA-DD-A1EG-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372698	180372698	Frame_Shift_Del	A	-	p.L345fs
LIHC	TCGA-DD-A1EG-01	FXR1	ENST00000357559.4,ENST00000491062.1,ENST00000445140.2,ENST00000468861.1,ENST00000472339.1,ENST00000480918.1,ENST00000475315.1,ENST00000305586.7	chr3	180669117:180669256:180671549:180671628:180675606:180675716,	180671550	180671628	180671587	180671587	Frame_Shift_Del	A	-	p.E280fs
LIHC	TCGA-DD-A1EG-01	DNAJC19	ENST00000478723.1,ENST00000479269.1,ENST00000382564.2,ENST00000491873.1	chr3	180703713:180703784:180704730:180704810:180705810:180705884,	180704731	180704810	180704760	180704760	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A1EG-01	ATP11B	ENST00000323116.5,ENST00000493826.1	chr3	182538047:182538164:182545907:182545997:182547459:182547540,	182545908	182545997	182545922	182545922	Frame_Shift_Del	T	-	p.N53fs
LIHC	TCGA-DD-A1EG-01	ATP11B	ENST00000323116.5,ENST00000493826.1	chr3	182538047:182538164:182545907:182545997:182547459:182547540,	182545908	182545997	182545931	182545931	Frame_Shift_Del	A	-	p.P56fs
LIHC	TCGA-DD-A1EG-01	ATP11B	ENST00000323116.5,ENST00000493826.1	chr3	182538047:182538164:182545907:182545997:182547459:182547540,	182545908	182545997	182545986	182545986	Frame_Shift_Del	T	-	p.F75fs
LIHC	TCGA-DD-A1EG-01	ATP11B	ENST00000323116.5,ENST00000498086.1	chr3	182575665:182575816:182576949:182577147:182583243:182583486,	182576950	182577147	182576979	182576979	Frame_Shift_Del	T	-	p.A344fs
LIHC	TCGA-DD-A1EG-01	MCCC1	ENST00000495767.1,ENST00000497830.1,ENST00000265594.4,ENST00000539926.1,ENST00000492597.1,ENST00000476176.1	chr3	182751787:182751865:182755005:182755222:182756813:182756923,	182755006	182755222	182755203	182755203	Frame_Shift_Del	T	-	p.N357fs
LIHC	TCGA-DD-A1EG-01	KLHL24	ENST00000242810.6,ENST00000454652.2	chr3	183361267:183361330:183368083:183369064:183381245:183381430,	183368084	183369064	183368740	183368740	Frame_Shift_Del	C	-	p.S199fs
LIHC	TCGA-DD-A1EG-01	YEATS2	ENST00000305135.5	chr3	183446477:183446639:183454505:183454617:183465459:183465504,	183454506	183454617	183454569	183454569	Frame_Shift_Del	T	-	p.H292fs
LIHC	TCGA-DD-A1EG-01	YEATS2	ENST00000305135.5	chr3	183471913:183472153:183474315:183474477:183476649:183476753,	183474316	183474477	183474358	183474358	Frame_Shift_Del	C	-	p.T478fs
LIHC	TCGA-DD-A1EG-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000417784.1,ENST00000317096.4	chr3	183547296:183547497:183551279:183551377:183558357:183558406,183547296:183547497:183551279:183551377:183551511:183551613,	183551280	183551377	183551295	183551295	Frame_Shift_Del	C	-	p.G338fs
LIHC	TCGA-DD-A1EG-01	ABCC5	ENST00000437205.1,ENST00000334444.6,ENST00000265586.6	chr3	183679298:183679442:183681172:183681376:183682972:183683045,	183681173	183681376	183681184	183681184	Frame_Shift_Del	G	-	p.H742fs
LIHC	TCGA-DD-A1EG-01	ABCC5	ENST00000392579.2,ENST00000437205.1,ENST00000427120.2,ENST00000382494.2,ENST00000334444.6,ENST00000443376.1,ENST00000265586.6,ENST00000437341.1	chr3	183706360:183706515:183707013:183707171:183732051:183732192,	183707014	183707171	183707031	183707031	Frame_Shift_Del	G	-	p.P90fs
LIHC	TCGA-DD-A1EG-01	ALG3	ENST00000455059.1,ENST00000397676.3,ENST00000423996.1,ENST00000418734.2,ENST00000411922.1,ENST00000445626.2	chr3	183962388:183962509:183962985:183963146:183963255:183963395,	183962986	183963146	183963127	183963127	Frame_Shift_Del	A	-	p.F116fs
LIHC	TCGA-DD-A1EG-01	EIF4G1	ENST00000455679.1,ENST00000411531.1,ENST00000342981.4,ENST00000346169.2,ENST00000319274.6,ENST00000414031.1,ENST00000450424.1	chr3	184033919:184034006:184035108:184035285:184035504:184035604,	184035109	184035285	184035257	184035257	Frame_Shift_Del	C	-	p.S99fs
LIHC	TCGA-DD-A1EG-01	CLCN2	ENST00000434054.2,ENST00000423355.2,ENST00000430397.1,ENST00000457512.1,ENST00000344937.7,ENST00000265593.4	chr3	184071037:184071210:184071449:184071583:184071888:184072096,	184071450	184071583	184071541	184071541	Frame_Shift_Del	A	-	p.V588fs
LIHC	TCGA-DD-A1EG-01	VPS8	ENST00000421069.1,ENST00000436792.2,ENST00000492449.1,ENST00000287546.4,ENST00000437079.3	chr3	184603897:184603944:184612490:184612713:184616352:184616442,	184612491	184612713	184612645	184612645	Frame_Shift_Del	A	-	p.K647fs
LIHC	TCGA-DD-A1EG-01	VPS8	ENST00000436792.2,ENST00000458721.1,ENST00000492449.1,ENST00000287546.4,ENST00000446204.2,ENST00000437079.3	chr3	184616352:184616442:184618708:184618760:184631306:184631349,	184618709	184618760	184618713	184618713	Frame_Shift_Del	T	-	p.L700fs
LIHC	TCGA-DD-A1EG-01	MAP3K13	ENST00000265026.3	chr3	185003312:185003431:185146284:185146844:185155234:185155418,185081029:185081156:185146284:185146844:185155234:185155418,	185146285	185146844	185146632	185146632	Frame_Shift_Del	G	-	p.R88fs
LIHC	TCGA-DD-A1EG-01	MAP3K13	ENST00000433092.1	chr3	185046682:185046750:185146284:185146734:185155234:185155418,	185146285	185146734	185146632	185146632	Frame_Shift_Del	G	-	p.R88fs
LIHC	TCGA-DD-A1EG-01	SENP2	ENST00000430355.1,ENST00000465201.1,ENST00000545472.1,ENST00000296257.5	chr3	185307901:185307957:185316199:185316333:185318552:185318613,185307901:185307957:185316199:185316333:185316745:185316812,	185316200	185316333	185316205	185316205	Frame_Shift_Del	T	-	p.F55fs
LIHC	TCGA-DD-A1EG-01	SENP2	ENST00000458551.1	chr3	185307901:185307957:185316181:185316333:185316745:185316812,	185316182	185316333	185316205	185316205	Frame_Shift_Del	T	-	p.F55fs
LIHC	TCGA-DD-A1EG-01	SENP2	ENST00000430355.1,ENST00000465201.1,ENST00000545472.1,ENST00000296257.5	chr3	185307901:185307957:185316199:185316333:185318552:185318613,185307901:185307957:185316199:185316333:185316745:185316812,	185316200	185316333	185316320	185316320	Frame_Shift_Del	C	-	p.A93fs
LIHC	TCGA-DD-A1EG-01	SENP2	ENST00000458551.1	chr3	185307901:185307957:185316181:185316333:185316745:185316812,	185316182	185316333	185316320	185316320	Frame_Shift_Del	C	-	p.A93fs
LIHC	TCGA-DD-A1EG-01	IGF2BP2	ENST00000382199.2,ENST00000457616.2,ENST00000421047.2	chr3	185376128:185376197:185390328:185390457:185393083:185393219,	185390329	185390457	185390344	185390344	Frame_Shift_Del	G	-	p.P395fs
LIHC	TCGA-DD-A1EG-01	IGF2BP2	ENST00000457616.2,ENST00000421047.2	chr3	185407342:185407415:185410486:185410568:185414399:185414451,	185410487	185410568	185410564	185410564	Frame_Shift_Del	A	-	p.F115fs
LIHC	TCGA-DD-A1EG-01	TRA2B	ENST00000485530.1	chr3	185643251:185643414:185644388:185644522:185649364:185649406,185643251:185643414:185644388:185644522:185655612:185655775,	185644389	185644522	185644458	185644458	Frame_Shift_Del	G	-	p.P34fs
LIHC	TCGA-DD-A1EG-01	ETV5	ENST00000537818.1,ENST00000306376.5,ENST00000434744.1,ENST00000480706.1	chr3	185769818:185769920:185774863:185775033:185775211:185775280,	185774864	185775033	185774971	185774971	Frame_Shift_Del	G	-	p.L368fs
LIHC	TCGA-DD-A1EG-01	TBCCD1	ENST00000338733.5,ENST00000424280.1,ENST00000446782.1	chr3	186268917:186269068:186272042:186272540:186272686:186272873,	186272043	186272540	186272330	186272330	Frame_Shift_Del	A	-	p.F419fs
LIHC	TCGA-DD-A1EG-01	EIF4A2	ENST00000426808.1,ENST00000429589.1,ENST00000443963.1,ENST00000475653.1,ENST00000356531.5	chr3	186502352:186502485:186503671:186503840:186503952:186504062,	186503672	186503840	186503676	186503676	Frame_Shift_Del	A	-	p.Q118fs
LIHC	TCGA-DD-A1EG-01	BCL6	ENST00000419510.2,ENST00000232014.4,ENST00000406870.2	chr3	187443286:187443417:187444518:187444686:187446147:187446332,	187444519	187444686	187444548	187444548	Frame_Shift_Del	T	-	p.N560fs
LIHC	TCGA-DD-A1EG-01	TPRG1	ENST00000433971.1	chr3	188889762:188889920:188925164:188925383:188933080:188933172,188850473:188850486:188925164:188925383:188933080:188933172,	188925165	188925383	188925332	188925332	Frame_Shift_Del	C	-	p.Y53fs
LIHC	TCGA-DD-A1EG-01	CLDN16	ENST00000264734.2	chr3	190122589:190122715:190126102:190126294:190127691:190127797,	190126103	190126294	190126249	190126249	Frame_Shift_Del	T	-	p.F247fs
LIHC	TCGA-DD-A1EG-01	CCDC50	ENST00000392456.3	chr3	191087707:191087825:191092850:191093378:191097947:191098063,	191092851	191093378	191093199	191093199	Frame_Shift_Del	A	-	p.E266fs
LIHC	TCGA-DD-A1EG-01	TMEM44	ENST00000273580.7,ENST00000494894.1,ENST00000347147.4,ENST00000381975.3,ENST00000473092.1	chr3	194336297:194336426:194337827:194337998:194343952:194344039,	194337828	194337998	194337901	194337901	Frame_Shift_Del	T	-	p.Q284fs
LIHC	TCGA-DD-A1EG-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452018	195452018	Frame_Shift_Del	A	-	p.S182fs
LIHC	TCGA-DD-A1EG-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453059	195453059	Frame_Shift_Del	C	-	p.P358fs
LIHC	TCGA-DD-A1EG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195507316	195507316	Frame_Shift_Del	G	-	p.P3712fs
LIHC	TCGA-DD-A1EG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195509287	195509287	Frame_Shift_Del	T	-	p.N3055fs
LIHC	TCGA-DD-A1EG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512020	195512020	Frame_Shift_Del	G	-	p.P2144fs
LIHC	TCGA-DD-A1EG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512068	195512068	Frame_Shift_Del	G	-	p.P2128fs
LIHC	TCGA-DD-A1EG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512596	195512596	Frame_Shift_Del	G	-	p.P1952fs
LIHC	TCGA-DD-A1EG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516538	195516538	Frame_Shift_Del	C	-	p.G638fs
LIHC	TCGA-DD-A1EG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516878	195516878	Frame_Shift_Del	T	-	p.T525fs
LIHC	TCGA-DD-A1EG-01	TNK2	ENST00000464041.1,ENST00000381916.2,ENST00000468819.1,ENST00000392400.1,ENST00000316664.3,ENST00000428187.1,ENST00000439230.1,ENST00000333602.6	chr3	195610027:195610180:195611682:195611904:195613847:195613918,	195611683	195611904	195611803	195611803	Frame_Shift_Del	C	-	p.G112fs
LIHC	TCGA-DD-A1EG-01	TNK2	ENST00000464041.1,ENST00000381916.2,ENST00000468819.1,ENST00000392400.1,ENST00000316664.3,ENST00000428187.1,ENST00000439230.1,ENST00000333602.6	chr3	195610027:195610180:195611682:195611904:195613847:195613918,	195611683	195611904	195611825	195611825	Frame_Shift_Del	G	-	p.P105fs
LIHC	TCGA-DD-A1EG-01	TFRC	ENST00000421258.1	chr3	195801067:195801304:195802029:195802231:195803934:195803993,195800800:195800996:195802029:195802231:195803934:195803976,195798873:195799023:195802029:195802231:195803934:195803976,	195802030	195802231	195802061	195802061	Frame_Shift_Del	C	-	p.G69fs
LIHC	TCGA-DD-A1EG-01	PCYT1A	ENST00000292823.2,ENST00000431016.1,ENST00000419333.1	chr3	195965661:195965765:195966417:195966606:195968818:195968941,	195966418	195966606	195966553	195966553	Frame_Shift_Del	T	-	p.K254fs
LIHC	TCGA-DD-A1EG-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196089164:196089558:196094898:196095026:196096291:196096382,	196094899	196095026	196094917	196094917	Frame_Shift_Del	G	-	p.P272fs
LIHC	TCGA-DD-A1EG-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196089164:196089558:196094898:196095026:196096291:196096382,	196094899	196095026	196094984	196094984	Frame_Shift_Del	A	-	p.F250fs
LIHC	TCGA-DD-A1EG-01	PAK2	ENST00000426668.1,ENST00000327134.3	chr3	196539609:196539722:196541321:196541439:196544927:196545027,	196541322	196541439	196541368	196541368	Frame_Shift_Del	G	-	p.G329fs
LIHC	TCGA-DD-A1EG-01	PAK2	ENST00000327134.3	chr3	196547264:196547438:196554066:196554204:196555189:196555300,	196554067	196554204	196554173	196554173	Frame_Shift_Del	A	-	p.E486fs
LIHC	TCGA-DD-A1EG-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000422288.1,ENST00000346964.2,ENST00000469371.1,ENST00000357674.4	chr3	196771493:196771600:196778447:196778539:196786759:196786869,	196778448	196778539	196778499	196778499	Frame_Shift_Del	T	-	p.T875fs
LIHC	TCGA-DD-A1EG-01	BDH1	ENST00000432819.1,ENST00000358186.2,ENST00000477015.1,ENST00000392379.1,ENST00000392378.2,ENST00000434143.1,ENST00000441275.1,ENST00000446746.1	chr3	197241136:197241287:197249510:197249652:197259282:197259385,	197249511	197249652	197249612	197249612	Frame_Shift_Del	T	-	p.N103fs
LIHC	TCGA-DD-A1EG-01	FYTTD1	ENST00000415708.2,ENST00000424384.2,ENST00000428395.2,ENST00000241502.4	chr3	197503797:197503872:197505208:197505335:197508681:197509005,	197505209	197505335	197505329	197505329	Frame_Shift_Del	A	-	p.G193fs
LIHC	TCGA-DD-A1EG-01	RPL35A	ENST00000429437.1	chr3	197677824:197677849:197678029:197678199:197680873:197680950,	197678030	197678199	197678080	197678080	Frame_Shift_Del	A	-	p.Q21fs
LIHC	TCGA-DD-A1EG-01	RPL35A	ENST00000464167.1,ENST00000485439.1,ENST00000448864.1,ENST00000442341.1	chr3	197677824:197677849:197678029:197678182:197680873:197680950,	197678030	197678182	197678080	197678080	Frame_Shift_Del	A	-	p.Q21fs
LIHC	TCGA-DD-A1EG-01	LMLN	ENST00000332636.5,ENST00000420910.2,ENST00000482695.1,ENST00000451139.2,ENST00000330198.4	chr3	197751528:197751659:197762703:197762914:197765437:197765538,	197762704	197762914	197762908	197762908	Frame_Shift_Del	C	-	p.P621fs
LIHC	TCGA-DD-A1EG-01	PIGG	ENST00000310340.5,ENST00000383028.4,ENST00000296306.7,ENST00000453061.2,ENST00000504346.1	chr4	520827:521019:524224:524534:527606:527770,	524225	524534	524286	524286	Frame_Shift_Del	A	-	p.K775fs
LIHC	TCGA-DD-A1EG-01	PDE6B	ENST00000429163.2,ENST00000496514.1,ENST00000255622.6	chr4	652740:652806:654255:654402:655922:656030,	654256	654402	654393	654393	Frame_Shift_Del	C	-	p.I535fs
LIHC	TCGA-DD-A1EG-01	CPLX1	ENST00000304062.6	chr4	780318:780486:786220:786396:818279:818389,	786221	786396	786394	786394	Frame_Shift_Del	C	-	p.A12fs
LIHC	TCGA-DD-A1EG-01	GAK	ENST00000505819.1	chr4	898474:898567:905460:905630:905817:905962,	905461	905630	905571	905571	Frame_Shift_Del	T	-	p.K91fs
LIHC	TCGA-DD-A1EG-01	TMEM175	ENST00000514453.1	chr4	926274:926328:941496:941680:941903:941942,926274:926328:941496:941680:944208:944279,	941497	941680	941569	941569	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-DD-A1EG-01	TMEM175	ENST00000504505.1	chr4	926274:926328:941496:941942:944208:944279,	941497	941942	941569	941569	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-DD-A1EG-01	TMEM175	ENST00000514453.1	chr4	926274:926328:941496:941680:941903:941942,926274:926328:941496:941680:944208:944279,	941497	941680	941611	941611	Frame_Shift_Del	G	-	p.E28fs
LIHC	TCGA-DD-A1EG-01	TMEM175	ENST00000504505.1	chr4	926274:926328:941496:941942:944208:944279,	941497	941942	941611	941611	Frame_Shift_Del	G	-	p.E28fs
LIHC	TCGA-DD-A1EG-01	DGKQ	ENST00000509465.1,ENST00000273814.3	chr4	956222:956401:956559:956708:956926:957078,	956560	956708	956623	956623	Frame_Shift_Del	C	-	p.E659fs
LIHC	TCGA-DD-A1EG-01	SPON2	ENST00000290902.5,ENST00000431380.1	chr4	1161284:1161444:1164189:1164364:1164786:1164858,	1164190	1164364	1164337	1164337	Frame_Shift_Del	C	-	p.A222fs
LIHC	TCGA-DD-A1EG-01	CTBP1	ENST00000382952.3,ENST00000504092.1,ENST00000290921.6	chr4	1207265:1207393:1208130:1208261:1209778:1209993,	1208131	1208261	1208224	1208224	Frame_Shift_Del	C	-	p.G257fs
LIHC	TCGA-DD-A1EG-01	CTBP1	ENST00000510739.1	chr4	1207265:1207393:1207978:1208261:1209778:1209993,	1207979	1208261	1208224	1208224	Frame_Shift_Del	C	-	p.G257fs
LIHC	TCGA-DD-A1EG-01	MXD4	ENST00000337190.2,ENST00000513372.1,ENST00000513380.1	chr4	2252384:2252428:2252810:2252973:2254134:2254249,	2252811	2252973	2252949	2252949	Frame_Shift_Del	C	-	p.A112fs
LIHC	TCGA-DD-A1EG-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831294	2831294	Frame_Shift_Del	C	-	p.P249fs
LIHC	TCGA-DD-A1EG-01	MFSD10	ENST00000507555.1,ENST00000512781.1	chr4	2932953:2933001:2933101:2933192:2933551:2933663,	2933102	2933192	2933121	2933121	Frame_Shift_Del	C	-	p.G365fs
LIHC	TCGA-DD-A1EG-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986251	2986251	Frame_Shift_Del	A	-	p.K23fs
LIHC	TCGA-DD-A1EG-01	GRK4	ENST00000504933.1,ENST00000398051.4,ENST00000345167.6,ENST00000398052.4	chr4	2993941:2994019:3005957:3006061:3009462:3009555,	3005958	3006061	3006036	3006036	Frame_Shift_Del	A	-	p.K141fs
LIHC	TCGA-DD-A1EG-01	GRK4	ENST00000505271.1	chr4	3029638:3029728:3030927:3031136:3042298:3042454,	3030928	3031136	3031026	3031026	Frame_Shift_Del	A	-	p.K388fs
LIHC	TCGA-DD-A1EG-01	GRK4	ENST00000504933.1,ENST00000398051.4,ENST00000345167.6,ENST00000398052.4	chr4	3031049:3031136:3037112:3037250:3039100:3039210,	3037113	3037250	3037181	3037181	Frame_Shift_Del	C	-	p.H446fs
LIHC	TCGA-DD-A1EG-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3179058:3179114:3180024:3180173:3182241:3182378,	3180025	3180173	3180053	3180053	Frame_Shift_Del	T	-	p.F1500fs
LIHC	TCGA-DD-A1EG-01	DOK7	ENST00000340083.5,ENST00000389653.2	chr4	3478068:3478269:3487265:3487385:3491403:3491523,	3487266	3487385	3487344	3487344	Frame_Shift_Del	C	-	p.S204fs
LIHC	TCGA-DD-A1EG-01	DOK7	ENST00000515886.1,ENST00000340083.5,ENST00000513995.1,ENST00000389653.2,ENST00000507039.1,ENST00000503688.1	chr4	3487265:3487385:3491403:3491523:3494485:3494612,	3491404	3491523	3491432	3491432	Frame_Shift_Del	G	-	p.V227fs
LIHC	TCGA-DD-A1EG-01	NSG1	ENST00000506380.1,ENST00000433139.2,ENST00000513555.1,ENST00000513829.1,ENST00000397958.1,ENST00000505246.1,ENST00000421177.2	chr4	4393201:4393318:4411299:4411410:4418961:4419170,	4411300	4411410	4411389	4411389	Frame_Shift_Del	C	-	p.C112fs
LIHC	TCGA-DD-A1EG-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344408.5	chr4	5564515:5564842:5566984:5567086:5570170:5570367,	5566985	5567086	5567015	5567015	Frame_Shift_Del	T	-	p.K1130fs
LIHC	TCGA-DD-A1EG-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5576411:5576499:5577966:5578181:5586349:5586577,	5577967	5578181	5578007	5578007	Frame_Shift_Del	G	-	p.L998fs
LIHC	TCGA-DD-A1EG-01	JAKMIP1	ENST00000409021.3,ENST00000473053.1,ENST00000457227.2,ENST00000410077.2,ENST00000282924.5,ENST00000409831.1	chr4	6066606:6066735:6080665:6080725:6081898:6082039,	6080666	6080725	6080683	6080683	Frame_Shift_Del	T	-	p.S429fs
LIHC	TCGA-DD-A1EG-01	WFS1	ENST00000226760.1,ENST00000503569.1,ENST00000507765.1	chr4	6292923:6293094:6293643:6293724:6296767:6296916,	6293644	6293724	6293663	6293663	Frame_Shift_Del	C	-	p.G217fs
LIHC	TCGA-DD-A1EG-01	PPP2R2C	ENST00000335585.5,ENST00000507294.1,ENST00000515571.1,ENST00000513943.1,ENST00000506140.1,ENST00000382599.4	chr4	6377545:6377658:6380133:6380299:6382723:6382821,	6380134	6380299	6380228	6380228	Frame_Shift_Del	A	-	p.F80fs
LIHC	TCGA-DD-A1EG-01	MAN2B2	ENST00000505907.1,ENST00000285599.3,ENST00000504248.1	chr4	6580119:6580225:6588722:6588895:6590771:6590887,	6588723	6588895	6588744	6588744	Frame_Shift_Del	A	-	p.E138fs
LIHC	TCGA-DD-A1EG-01	MAN2B2	ENST00000505907.1,ENST00000285599.3,ENST00000504248.1	chr4	6580119:6580225:6588722:6588895:6590771:6590887,	6588723	6588895	6588809	6588809	Frame_Shift_Del	C	-	p.P160fs
LIHC	TCGA-DD-A1EG-01	KIAA0232	ENST00000307659.5,ENST00000425103.1	chr4	6873300:6873409:6878386:6878484:6882513:6882640,	6878387	6878484	6878457	6878457	Frame_Shift_Del	T	-	p.N1327fs
LIHC	TCGA-DD-A1EG-01	TBC1D14	ENST00000448507.1	chr4	6911170:6911232:6925099:6925838:6969030:6969151,	6925100	6925838	6925169	6925169	Frame_Shift_Del	T	-	p.I18fs
LIHC	TCGA-DD-A1EG-01	TBC1D14	ENST00000448507.1	chr4	6911170:6911232:6925099:6925838:6969030:6969151,	6925100	6925838	6925552	6925552	Frame_Shift_Del	A	-	p.K146fs
LIHC	TCGA-DD-A1EG-01	ABLIM2	ENST00000545242.1,ENST00000361581.5,ENST00000296372.8,ENST00000341937.5	chr4	8021344:8021398:8021928:8022030:8029485:8029584,8021344:8021398:8021928:8022030:8031382:8031503,	8021929	8022030	8021969	8021969	Frame_Shift_Del	G	-	p.P410fs
LIHC	TCGA-DD-A1EG-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8228948	8228948	Frame_Shift_Del	T	-	p.P433fs
LIHC	TCGA-DD-A1EG-01	ACOX3	ENST00000503233.1,ENST00000508302.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8383280:8383334:8390899:8391013:8391338:8391461,	8390900	8391013	8390922	8390922	Frame_Shift_Del	A	-	p.V505fs
LIHC	TCGA-DD-A1EG-01	ACOX3	ENST00000503233.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8398663:8398846:8401282:8401379:8407681:8407770,	8401283	8401379	8401377	8401377	Frame_Shift_Del	A	-	p.F260fs
LIHC	TCGA-DD-A1EG-01	SLC2A9	ENST00000264784.3	chr4	9998404:9998565:10020598:10020697:10027527:10027630,9998404:9998565:10020598:10020697:10022903:10023107,	10020599	10020697	10020605	10020605	Frame_Shift_Del	G	-	p.P52fs
LIHC	TCGA-DD-A1EG-01	WDR1	ENST00000502962.1,ENST00000502702.1,ENST00000382451.2,ENST00000499869.2,ENST00000382452.2	chr4	10076966:10077108:10078927:10079072:10079376:10079550,	10078928	10079072	10079024	10079024	Frame_Shift_Del	A	-	p.W540fs
LIHC	TCGA-DD-A1EG-01	WDR1	ENST00000508949.1,ENST00000502962.1,ENST00000506246.1,ENST00000502702.1,ENST00000382451.2,ENST00000505543.1,ENST00000499869.2,ENST00000510848.1,ENST00000504739.1,ENST00000382452.2	chr4	10089399:10089564:10089916:10089997:10090287:10090365,	10089917	10089997	10089970	10089970	Frame_Shift_Del	C	-	p.E222fs
LIHC	TCGA-DD-A1EG-01	CLNK	ENST00000226951.6,ENST00000442825.2	chr4	10586550:10586579:10599601:10599673:10669482:10669535,	10599602	10599673	10599631	10599631	Frame_Shift_Del	T	-	p.K18fs
LIHC	TCGA-DD-A1EG-01	BOD1L1	ENST00000040738.5,ENST00000482713.1	chr4	13615819:13616434:13616935:13617126:13621566:13621691,	13616936	13617126	13617089	13617089	Frame_Shift_Del	A	-	p.S136fs
LIHC	TCGA-DD-A1EG-01	CPEB2	ENST00000507071.1,ENST00000509684.1,ENST00000382401.3,ENST00000259997.5,ENST00000345451.3,ENST00000538197.1,ENST00000541112.1,ENST00000442003.2,ENST00000382395.3	chr4	15060044:15060163:15060810:15060925:15063702:15063884,	15060811	15060925	15060877	15060877	Frame_Shift_Del	C	-	p.P883fs
LIHC	TCGA-DD-A1EG-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1	chr4	15572020:15572119:15575772:15575949:15581590:15581794,	15575773	15575949	15575879	15575879	Frame_Shift_Del	A	-	p.E1234fs
LIHC	TCGA-DD-A1EG-01	TAPT1	ENST00000513359.1,ENST00000510868.1,ENST00000508888.1,ENST00000405303.2,ENST00000505152.1	chr4	16193118:16193146:16204084:16204203:16227881:16228072,16193118:16193146:16204084:16204203:16215390:16215521,	16204085	16204203	16204163	16204163	Frame_Shift_Del	A	-	p.L124fs
LIHC	TCGA-DD-A1EG-01	LAP3	ENST00000606142.1,ENST00000226299.4	chr4	17583382:17583437:17583910:17584016:17585105:17585265,	17583911	17584016	17583916	17583916	Frame_Shift_Del	C	-	p.F93fs
LIHC	TCGA-DD-A1EG-01	LAP3	ENST00000503467.1,ENST00000606142.1,ENST00000226299.4	chr4	17600078:17600181:17606210:17606290:17608451:17608507,	17606211	17606290	17606246	17606246	Frame_Shift_Del	G	-	p.G406fs
LIHC	TCGA-DD-A1EG-01	PACRGL	ENST00000503747.1,ENST00000510051.1,ENST00000509469.1,ENST00000471979.2,ENST00000514485.1,ENST00000506745.1,ENST00000507634.1,ENST00000506702.1,ENST00000360916.5,ENST00000503585.1,ENST00000504630.1,ENST00000514663.1,ENST00000467997.2,ENST00000513590.1,ENST00000508952.1,ENST00000295290.8	chr4	20706088:20706156:20706282:20706437:20709425:20709472,	20706283	20706437	20706419	20706419	Frame_Shift_Del	C	-	p.N63fs
LIHC	TCGA-DD-A1EG-01	DHX15	ENST00000336812.4	chr4	24534486:24534677:24538673:24538796:24541730:24541922,	24538674	24538796	24538732	24538732	Frame_Shift_Del	A	-	p.F617fs
LIHC	TCGA-DD-A1EG-01	ANAPC4	ENST00000510092.1,ENST00000315368.3	chr4	25411319:25411413:25415266:25415364:25415945:25416007,	25415267	25415364	25415298	25415298	Frame_Shift_Del	A	-	p.R519fs
LIHC	TCGA-DD-A1EG-01	TBC1D1	ENST00000443855.1	chr4	38051377:38051519:38053519:38053681:38054726:38054846,38051377:38051519:38053519:38053681:38055819:38055865,	38053520	38053681	38053553	38053553	Frame_Shift_Del	C	-	p.H648fs
LIHC	TCGA-DD-A1EG-01	TBC1D1	ENST00000443855.1	chr4	38051377:38051519:38053519:38053681:38054726:38054846,38051377:38051519:38053519:38053681:38055819:38055865,	38053520	38053681	38053598	38053598	Frame_Shift_Del	C	-	p.N663fs
LIHC	TCGA-DD-A1EG-01	TBC1D1	ENST00000261439.4,ENST00000511238.1,ENST00000510573.2	chr4	38104668:38104778:38117330:38117575:38119653:38119813,	38117331	38117575	38117501	38117501	Frame_Shift_Del	T	-	p.F910fs
LIHC	TCGA-DD-A1EG-01	TBC1D1	ENST00000406664.1	chr4	38119653:38119813:38126582:38126752:38134704:38134878,38121574:38121729:38126582:38126752:38134704:38134878,	38126583	38126752	38126589	38126589	Frame_Shift_Del	T	-	p.I990fs
LIHC	TCGA-DD-A1EG-01	FAM114A1	ENST00000358869.2	chr4	38869436:38869455:38893363:38893451:38907142:38907256,38879691:38880047:38893363:38893451:38907142:38907256,	38893364	38893451	38893413	38893413	Frame_Shift_Del	G	-	p.W133fs
LIHC	TCGA-DD-A1EG-01	FAM114A1	ENST00000358869.2,ENST00000512889.1,ENST00000515037.1	chr4	38916541:38916694:38924390:38924514:38930862:38930904,	38924391	38924514	38924460	38924460	Frame_Shift_Del	A	-	p.K339fs
LIHC	TCGA-DD-A1EG-01	FAM114A1	ENST00000508737.1,ENST00000358869.2,ENST00000515037.1	chr4	38933855:38933995:38937338:38937411:38942588:38942642,	38937339	38937411	38937378	38937378	Frame_Shift_Del	A	-	p.S501fs
LIHC	TCGA-DD-A1EG-01	FAM114A1	ENST00000508737.1,ENST00000358869.2,ENST00000515037.1	chr4	38937352:38937411:38942588:38942642:38945076:38945181,	38942589	38942642	38942615	38942615	Frame_Shift_Del	C	-	p.N521fs
LIHC	TCGA-DD-A1EG-01	WDR19	ENST00000512112.1,ENST00000288634.7,ENST00000506869.1	chr4	39188158:39188224:39191275:39191401:39201097:39201213,	39191276	39191401	39191334	39191334	Frame_Shift_Del	A	-	p.K75fs
LIHC	TCGA-DD-A1EG-01	RFC1	ENST00000381897.1	chr4	39308211:39308321:39310255:39310652:39313064:39313169,39308253:39308324:39310255:39310652:39313064:39313169,	39310256	39310652	39310558	39310558	Frame_Shift_Del	T	-	p.K528fs
LIHC	TCGA-DD-A1EG-01	RFC1	ENST00000381897.1	chr4	39308211:39308321:39310255:39310652:39313064:39313169,39308253:39308324:39310255:39310652:39313064:39313169,	39310256	39310652	39310598	39310598	Frame_Shift_Del	T	-	p.R515fs
LIHC	TCGA-DD-A1EG-01	UGDH	ENST00000501493.2	chr4	39511379:39511527:39511972:39512170:39515702:39515800,	39511973	39512170	39512016	39512016	Frame_Shift_Del	T	-	p.K207fs
LIHC	TCGA-DD-A1EG-01	UGDH	ENST00000501493.2	chr4	39511379:39511527:39511972:39512170:39515702:39515800,	39511973	39512170	39512073	39512073	Frame_Shift_Del	C	-	p.G188fs
LIHC	TCGA-DD-A1EG-01	UBE2K	ENST00000513231.1	chr4	39739039:39739133:39747371:39747430:39757276:39757359,39699947:39700010:39747371:39747430:39757276:39757359,	39747372	39747430	39747422	39747422	Frame_Shift_Del	C	-	p.P71fs
LIHC	TCGA-DD-A1EG-01	UBE2K	ENST00000438068.2,ENST00000513231.1,ENST00000503368.1,ENST00000261427.5,ENST00000510719.1	chr4	39776453:39776553:39779301:39779430:39779979:39780004,	39779302	39779430	39779392	39779392	Frame_Shift_Del	A	-	p.K165fs
LIHC	TCGA-DD-A1EG-01	UBE2K	ENST00000438068.2,ENST00000513231.1,ENST00000503368.1,ENST00000261427.5,ENST00000510719.1	chr4	39776453:39776553:39779301:39779430:39779979:39780004,	39779302	39779430	39779402	39779402	Frame_Shift_Del	A	-	p.E167fs
LIHC	TCGA-DD-A1EG-01	PDS5A	ENST00000303538.8	chr4	39824482:39827108:39839475:39839828:39843567:39843676,	39839476	39839828	39839632	39839632	Frame_Shift_Del	T	-	p.N1285fs
LIHC	TCGA-DD-A1EG-01	N4BP2	ENST00000513269.1,ENST00000261435.6,ENST00000511480.1	chr4	40121551:40123929:40124746:40124832:40125779:40125825,	40124747	40124832	40124818	40124818	Frame_Shift_Del	A	-	p.K1424fs
LIHC	TCGA-DD-A1EG-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40439810	40439810	Frame_Shift_Del	G	-	p.P367fs
LIHC	TCGA-DD-A1EG-01	NSUN7	ENST00000473399.1,ENST00000381782.2,ENST00000316607.5	chr4	40762450:40762509:40763187:40763318:40776281:40776434,	40763188	40763318	40763229	40763229	Frame_Shift_Del	T	-	p.D133fs
LIHC	TCGA-DD-A1EG-01	APBB2	ENST00000506352.1,ENST00000295974.8,ENST00000513140.1	chr4	40946881:40947090:41015599:41016415:41035252:41035321,40946881:40947087:41015599:41016415:41035252:41035321,	41015600	41016415	41015611	41015611	Frame_Shift_Del	G	-	p.P275fs
LIHC	TCGA-DD-A1EG-01	LIMCH1	ENST00000512820.1,ENST00000396595.3,ENST00000508466.1,ENST00000503057.1,ENST00000514096.1,ENST00000511496.1,ENST00000381753.4,ENST00000513024.1,ENST00000509277.1,ENST00000508501.1	chr4	41673570:41673611:41678398:41678479:41682022:41682115,	41678399	41678479	41678445	41678445	Frame_Shift_Del	A	-	p.E778fs
LIHC	TCGA-DD-A1EG-01	LIMCH1	ENST00000512946.1,ENST00000313860.7	chr4	41673570:41673611:41678395:41678479:41682022:41682115,	41678396	41678479	41678445	41678445	Frame_Shift_Del	A	-	p.E778fs
LIHC	TCGA-DD-A1EG-01	TMEM33	ENST00000508448.1	chr4	41937145:41937327:41937483:41937546:41940618:41940713,	41937484	41937546	41937532	41937532	Frame_Shift_Del	G	-	p.G11fs
LIHC	TCGA-DD-A1EG-01	SLC30A9	ENST00000513699.1,ENST00000264451.7	chr4	42069101:42069209:42072542:42072708:42077673:42077803,	42072543	42072708	42072593	42072593	Frame_Shift_Del	G	-	p.G435fs
LIHC	TCGA-DD-A1EG-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42551029:42551079:42553214:42553297:42554521:42554627,	42553215	42553297	42553252	42553252	Frame_Shift_Del	A	-	p.F522fs
LIHC	TCGA-DD-A1EG-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42626552:42626651:42627630:42627730:42629011:42629126,	42627631	42627730	42627652	42627652	Frame_Shift_Del	A	-	p.F81fs
LIHC	TCGA-DD-A1EG-01	GUF1	ENST00000511493.1	chr4	44696428:44696530:44699424:44699461:44700560:44702696,	44699425	44699461	44699455	44699455	Frame_Shift_Del	A	-	p.A622fs
LIHC	TCGA-DD-A1EG-01	COMMD8	ENST00000381571.4	chr4	47452884:47453682:47455075:47455231:47458593:47458746,	47455076	47455231	47455145	47455145	Frame_Shift_Del	T	-	p.K154fs
LIHC	TCGA-DD-A1EG-01	ATP10D	ENST00000273859.3	chr4	47548640:47548879:47556742:47556931:47559680:47560290,	47556743	47556931	47556779	47556779	Frame_Shift_Del	A	-	p.K558fs
LIHC	TCGA-DD-A1EG-01	TXK	ENST00000264316.4,ENST00000507351.1	chr4	48073533:48073691:48075951:48076070:48078418:48078483,	48075952	48076070	48076008	48076008	Frame_Shift_Del	G	-	p.P435fs
LIHC	TCGA-DD-A1EG-01	TXK	ENST00000514937.1	chr4	48073533:48073691:48078418:48078483:48081928:48082083,	48078419	48078483	48078459	48078459	Frame_Shift_Del	A	-	p.S400fs
LIHC	TCGA-DD-A1EG-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000513401.1,ENST00000514617.1,ENST00000507873.2	chr4	48545823:48546014:48546799:48546921:48548083:48548285,	48546800	48546921	48546838	48546838	Frame_Shift_Del	A	-	p.L1788fs
LIHC	TCGA-DD-A1EG-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000507711.1,ENST00000514617.1,ENST00000507873.2	chr4	48553510:48553595:48555231:48555400:48558994:48559135,	48555232	48555400	48555279	48555279	Frame_Shift_Del	G	-	p.P1463fs
LIHC	TCGA-DD-A1EG-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000507711.1	chr4	48611003:48611084:48611760:48611840:48621290:48621387,	48611761	48611840	48611784	48611784	Frame_Shift_Del	A	-	p.F156fs
LIHC	TCGA-DD-A1EG-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000507711.1	chr4	48625142:48625196:48636307:48636507:48686689:48686812,	48636308	48636507	48636334	48636334	Frame_Shift_Del	T	-	p.I32fs
LIHC	TCGA-DD-A1EG-01	OCIAD1	ENST00000508996.1,ENST00000512236.1,ENST00000514981.1,ENST00000507210.1,ENST00000444354.2,ENST00000511102.1,ENST00000508293.1,ENST00000509664.1,ENST00000396448.2,ENST00000509164.1,ENST00000425583.2,ENST00000509963.1,ENST00000513391.2,ENST00000264312.7,ENST00000504654.1,ENST00000507546.1,ENST00000381473.3	chr4	48833243:48833266:48835417:48835498:48844652:48844706,48834641:48834699:48835417:48835498:48844652:48844706,	48835418	48835498	48835451	48835451	Frame_Shift_Del	A	-	p.E31fs
LIHC	TCGA-DD-A1EG-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859339	48859339	Frame_Shift_Del	C	-	p.D219fs
LIHC	TCGA-DD-A1EG-01	CWH43	ENST00000513409.1,ENST00000226432.4	chr4	49000476:49000565:49005751:49006009:49009217:49009343,	49005752	49006009	49005768	49005768	Frame_Shift_Del	G	-	p.A273fs
LIHC	TCGA-DD-A1EG-01	SPATA18	ENST00000511028.1,ENST00000419395.2,ENST00000505320.1,ENST00000295213.4	chr4	52942944:52943206:52944900:52945059:52945909:52946066,	52944901	52945059	52944924	52944924	Frame_Shift_Del	G	-	p.M348fs
LIHC	TCGA-DD-A1EG-01	TMEM165	ENST00000381334.5	chr4	56269409:56269505:56277780:56278006:56283238:56283412,56262417:56262563:56277780:56278006:56283238:56283412,	56277781	56278006	56277984	56277984	Frame_Shift_Del	G	-	p.L137fs
LIHC	TCGA-DD-A1EG-01	CLOCK	ENST00000309964.4,ENST00000381322.1,ENST00000513440.1	chr4	56304448:56304574:56308598:56308801:56309853:56309922,56304448:56304704:56308598:56308801:56309853:56309922,	56308599	56308801	56308642	56308642	Frame_Shift_Del	G	-	p.Q688fs
LIHC	TCGA-DD-A1EG-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56762882:56763066:56765850:56766050:56768509:56768704,	56765851	56766050	56765965	56765965	Frame_Shift_Del	A	-	p.E751fs
LIHC	TCGA-DD-A1EG-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56858099:56858251:56865467:56865583:56865656:56865811,	56865468	56865583	56865575	56865575	Frame_Shift_Del	A	-	p.E706fs
LIHC	TCGA-DD-A1EG-01	AASDH	ENST00000602986.1,ENST00000503808.1	chr4	57248642:57248763:57250235:57250507:57253527:57253589,57244313:57244630:57250235:57250507:57253527:57253589,	57250236	57250507	57250294	57250294	Frame_Shift_Del	T	-	p.I58fs
LIHC	TCGA-DD-A1EG-01	AASDH	ENST00000602986.1,ENST00000503808.1	chr4	57248642:57248763:57250235:57250507:57253527:57253589,57244313:57244630:57250235:57250507:57253527:57253589,	57250236	57250507	57250314	57250314	Frame_Shift_Del	A	-	p.L51fs
LIHC	TCGA-DD-A1EG-01	PAICS	ENST00000264221.2,ENST00000505164.1,ENST00000512576.1,ENST00000514888.1	chr4	57302427:57302494:57307828:57308026:57312860:57313039,	57307829	57308026	57307950	57307950	Frame_Shift_Del	A	-	p.R46fs
LIHC	TCGA-DD-A1EG-01	EPHA5	ENST00000511294.1,ENST00000273854.3,ENST00000354839.4	chr4	66286158:66286283:66356094:66356430:66361105:66361261,	66356095	66356430	66356248	66356248	Frame_Shift_Del	G	-	p.R417fs
LIHC	TCGA-DD-A1EG-01	CSN1S1	ENST00000507772.1,ENST00000246891.4,ENST00000507763.1,ENST00000444405.3	chr4	70802286:70802325:70802838:70802862:70803517:70803541,	70802839	70802862	70802848	70802848	Frame_Shift_Del	A	-	p.N69fs
LIHC	TCGA-DD-A1EG-01	HTN3	ENST00000533547.1,ENST00000529625.1,ENST00000530128.1,ENST00000381057.3	chr4	70894175:70894233:70896444:70896508:70897695:70897716,	70896445	70896508	70896464	70896464	Frame_Shift_Del	T	-	p.F4fs
LIHC	TCGA-DD-A1EG-01	ODAM	ENST00000396094.2,ENST00000510847.1,ENST00000510709.2	chr4	71066213:71066318:71067170:71067218:71067974:71068046,	71067171	71067218	71067189	71067189	Frame_Shift_Del	T	-	p.F183fs
LIHC	TCGA-DD-A1EG-01	DCK	ENST00000503359.1,ENST00000504952.1,ENST00000286648.5	chr4	71889275:71889423:71891532:71891648:71892381:71892472,	71891533	71891648	71891558	71891558	Frame_Shift_Del	G	-	p.R192fs
LIHC	TCGA-DD-A1EG-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000514331.1,ENST00000351898.6	chr4	72120936:72121116:72205086:72205222:72215628:72215789,	72205087	72205222	72205146	72205146	Frame_Shift_Del	C	-	p.P62fs
LIHC	TCGA-DD-A1EG-01	GC	ENST00000504199.1,ENST00000509740.1,ENST00000273951.8,ENST00000503472.1	chr4	72611867:72611922:72618234:72618367:72620127:72620195,	72618235	72618367	72618349	72618349	Frame_Shift_Del	T	-	p.K427fs
LIHC	TCGA-DD-A1EG-01	COX18	ENST00000510031.1	chr4	73930966:73931130:73933745:73933850:73935033:73935409,	73933746	73933850	73933776	73933776	Frame_Shift_Del	T	-	p.N135fs
LIHC	TCGA-DD-A1EG-01	COX18	ENST00000507544.2	chr4	73930966:73931130:73933745:73933846:73935033:73935409,	73933746	73933846	73933776	73933776	Frame_Shift_Del	T	-	p.N135fs
LIHC	TCGA-DD-A1EG-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73957348	73957348	Frame_Shift_Del	A	-	p.F1999fs
LIHC	TCGA-DD-A1EG-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73957773	73957773	Frame_Shift_Del	A	-	p.S1859fs
LIHC	TCGA-DD-A1EG-01	ANKRD17	ENST00000558247.1,ENST00000561029.1	chr4	74000833:74000982:74005247:74006000:74007457:74007509,74000833:74000979:74005247:74006000:74007457:74007509,	74005248	74006000	74005902	74005902	Frame_Shift_Del	C	-	p.A811fs
LIHC	TCGA-DD-A1EG-01	ALB	ENST00000295897.4,ENST00000509063.1,ENST00000505649.1	chr4	74272345:74272478:74275071:74275204:74276028:74276126,74274354:74274522:74275071:74275204:74276028:74276081,	74275072	74275204	74275113	74275113	Frame_Shift_Del	C	-	p.A175fs
LIHC	TCGA-DD-A1EG-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74285333:74285356:74285970:74286038:74286808:74286910,	74285971	74286038	74285981	74285981	Frame_Shift_Del	T	-	p.L599fs
LIHC	TCGA-DD-A1EG-01	AFP	ENST00000226359.2,ENST00000395792.2,ENST00000508838.1	chr4	74316331:74316470:74318117:74318341:74319481:74319614,	74318118	74318341	74318255	74318255	Frame_Shift_Del	C	-	p.V522fs
LIHC	TCGA-DD-A1EG-01	PARM1	ENST00000307428.7	chr4	75858325:75858580:75937634:75938360:75959092:75959171,	75937635	75938360	75937806	75937806	Frame_Shift_Del	C	-	p.A72fs
LIHC	TCGA-DD-A1EG-01	RCHY1	ENST00000512706.1,ENST00000513909.1,ENST00000512567.1,ENST00000380840.2,ENST00000324439.5	chr4	76415807:76415911:76416820:76416847:76416933:76416992,	76416821	76416847	76416835	76416835	Frame_Shift_Del	T	-	p.E175fs
LIHC	TCGA-DD-A1EG-01	RCHY1	ENST00000505514.1,ENST00000504085.1	chr4	76415807:76415911:76416792:76416847:76416933:76416992,	76416793	76416847	76416835	76416835	Frame_Shift_Del	T	-	p.E175fs
LIHC	TCGA-DD-A1EG-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76521430:76521524:76522118:76522420:76523260:76523396,	76522119	76522420	76522288	76522288	Frame_Shift_Del	G	-	p.H385fs
LIHC	TCGA-DD-A1EG-01	G3BP2	ENST00000357854.3,ENST00000395719.3,ENST00000359707.4	chr4	76569572:76570886:76571521:76571640:76572212:76572341,	76571522	76571640	76571592	76571592	Frame_Shift_Del	C	-	p.G369fs
LIHC	TCGA-DD-A1EG-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660148	77660148	Frame_Shift_Del	C	-	p.H274fs
LIHC	TCGA-DD-A1EG-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77662441	77662441	Frame_Shift_Del	C	-	p.P1039fs
LIHC	TCGA-DD-A1EG-01	CCNI	ENST00000537948.1,ENST00000237654.4,ENST00000505609.1,ENST00000504697.1	chr4	77977217:77977255:77977401:77977476:77979659:77979788,	77977402	77977476	77977433	77977433	Frame_Shift_Del	A	-	p.F96fs
LIHC	TCGA-DD-A1EG-01	MRPL1	ENST00000315567.8	chr4	78815292:78815404:78830419:78830526:78870950:78871032,	78830420	78830526	78830461	78830461	Frame_Shift_Del	A	-	p.K238fs
LIHC	TCGA-DD-A1EG-01	MRPL1	ENST00000504901.1,ENST00000315567.8	chr4	78830419:78830526:78870950:78871032:78873642:78873903,	78870951	78871032	78870994	78870994	Frame_Shift_Del	T	-	p.V274fs
LIHC	TCGA-DD-A1EG-01	FRAS1	ENST00000502446.1,ENST00000264895.6,ENST00000325942.6,ENST00000508900.1,ENST00000264899.6	chr4	79199808:79199898:79202551:79202587:79203973:79204121,	79202552	79202587	79202573	79202573	Frame_Shift_Del	G	-	p.V365fs
LIHC	TCGA-DD-A1EG-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79385596:79385737:79387361:79387589:79391131:79391245,	79387362	79387589	79387578	79387578	Frame_Shift_Del	G	-	p.G2417fs
LIHC	TCGA-DD-A1EG-01	BMP2K	ENST00000502871.1,ENST00000389010.3,ENST00000335016.5	chr4	79766169:79766203:79768341:79768423:79772077:79772210,	79768342	79768423	79768371	79768371	Frame_Shift_Del	A	-	p.E233fs
LIHC	TCGA-DD-A1EG-01	HNRNPD	ENST00000353341.4	chr4	83274986:83275307:83276456:83276554:83277689:83277836,83274986:83275307:83276456:83276554:83277948:83278048,	83276457	83276554	83276496	83276496	Frame_Shift_Del	T	-	p.K353fs
LIHC	TCGA-DD-A1EG-01	HNRNPD	ENST00000353341.4	chr4	83274986:83275307:83276456:83276554:83277689:83277836,83274986:83275307:83276456:83276554:83277948:83278048,	83276457	83276554	83276540	83276540	Frame_Shift_Del	A	-	p.Y339fs
LIHC	TCGA-DD-A1EG-01	HNRNPD	ENST00000514671.1,ENST00000353341.4,ENST00000508119.1	chr4	83276456:83276554:83277948:83278048:83278465:83278545,	83277949	83278048	83277993	83277993	Frame_Shift_Del	C	-	p.G270fs
LIHC	TCGA-DD-A1EG-01	HNRNPDL	ENST00000514511.1	chr4	83348342:83348457:83348585:83348717:83349170:83349332,83348342:83348457:83348585:83348717:83350400:83350578,	83348586	83348717	83348625	83348625	Frame_Shift_Del	T	-	p.K289fs
LIHC	TCGA-DD-A1EG-01	SEC31A	ENST00000443462.2,ENST00000505984.1,ENST00000508502.1,ENST00000264405.5	chr4	83750152:83750211:83763337:83763634:83765538:83765613,	83763338	83763634	83763527	83763527	Frame_Shift_Del	A	-	p.Y912fs
LIHC	TCGA-DD-A1EG-01	SEC31A	ENST00000432794.1	chr4	83750152:83750211:83763292:83763634:83765538:83765613,83752089:83752128:83763292:83763634:83765538:83765613,	83763293	83763634	83763527	83763527	Frame_Shift_Del	A	-	p.Y912fs
LIHC	TCGA-DD-A1EG-01	SEC31A	ENST00000443462.2,ENST00000513858.1,ENST00000432794.1,ENST00000348405.4,ENST00000311785.7,ENST00000500777.2,ENST00000509142.1,ENST00000326950.5,ENST00000505984.1,ENST00000505472.1,ENST00000448323.1,ENST00000503058.1,ENST00000508502.1,ENST00000355196.2,ENST00000436790.2,ENST00000508479.1,ENST00000395310.2	chr4	83795850:83795904:83796879:83796975:83799882:83800071,	83796880	83796975	83796905	83796905	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A1EG-01	HELQ	ENST00000508591.1,ENST00000295488.3,ENST00000510985.1	chr4	84337883:84338018:84339245:84339359:84342715:84342825,	84339246	84339359	84339325	84339325	Frame_Shift_Del	A	-	p.L995fs
LIHC	TCGA-DD-A1EG-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84374483	84374483	Frame_Shift_Del	T	-	p.T305fs
LIHC	TCGA-DD-A1EG-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84375009	84375009	Frame_Shift_Del	T	-	p.K129fs
LIHC	TCGA-DD-A1EG-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6,ENST00000502971.1,ENST00000507902.1	chr4	87593517:87593696:87607862:87607928:87610157:87610214,	87607863	87607928	87607897	87607897	Frame_Shift_Del	G	-	p.W110fs
LIHC	TCGA-DD-A1EG-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2	chr4	87662786:87662969:87666118:87666281:87671622:87672040,	87666119	87666281	87666138	87666138	Frame_Shift_Del	A	-	p.Q836fs
LIHC	TCGA-DD-A1EG-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87687584:87687670:87688969:87689129:87690921:87691136,	87688970	87689129	87689079	87689079	Frame_Shift_Del	A	-	p.E1485fs
LIHC	TCGA-DD-A1EG-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87687584:87687670:87688969:87689129:87690921:87691136,	87688970	87689129	87689105	87689105	Frame_Shift_Del	A	-	p.K1494fs
LIHC	TCGA-DD-A1EG-01	AFF1	ENST00000395146.4,ENST00000544085.1	chr4	88052944:88053016:88053422:88053560:88055625:88055846,88052944:88053016:88053422:88053560:88055622:88055846,	88053423	88053560	88053466	88053466	Frame_Shift_Del	A	-	p.K1067fs
LIHC	TCGA-DD-A1EG-01	NUDT9	ENST00000440591.2	chr4	88344033:88344164:88356132:88356372:88362980:88363067,	88356133	88356372	88356280	88356280	Frame_Shift_Del	G	-	p.V35fs
LIHC	TCGA-DD-A1EG-01	NUDT9	ENST00000512216.1,ENST00000473942.1,ENST00000302174.4	chr4	88359428:88359524:88362980:88363067:88370293:88370405,	88362981	88363067	88363011	88363011	Frame_Shift_Del	C	-	p.G108fs
LIHC	TCGA-DD-A1EG-01	PKD2	ENST00000237596.2	chr4	88967793:88968022:88973142:88973310:88977237:88977419,	88973143	88973310	88973293	88973293	Frame_Shift_Del	T	-	p.F568fs
LIHC	TCGA-DD-A1EG-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89042786:89042944:89052212:89052365:89052954:89053069,	89052213	89052365	89052271	89052271	Frame_Shift_Del	T	-	p.N158fs
LIHC	TCGA-DD-A1EG-01	ABCG2	ENST00000505480.1	chr4	89053727:89053787:89060944:89061166:89079537:89080064,89053727:89053787:89060944:89061166:89079728:89079823,	89060945	89061166	89061031	89061031	Frame_Shift_Del	A	-	p.F39fs
LIHC	TCGA-DD-A1EG-01	HERC6	ENST00000502870.1,ENST00000264346.7,ENST00000504905.1,ENST00000273960.3,ENST00000380265.5,ENST00000506714.1	chr4	89304383:89304532:89306650:89306727:89311803:89311884,	89306651	89306727	89306675	89306675	Frame_Shift_Del	A	-	p.I128fs
LIHC	TCGA-DD-A1EG-01	HERC6	ENST00000264346.7	chr4	89338576:89338731:89345011:89345125:89349731:89349902,89338576:89338731:89345011:89345125:89345746:89345854,	89345012	89345125	89345040	89345040	Frame_Shift_Del	A	-	p.E581fs
LIHC	TCGA-DD-A1EG-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89361025:89361209:89361299:89361402:89363385:89364249,	89361300	89361402	89361390	89361390	Frame_Shift_Del	A	-	p.K909fs
LIHC	TCGA-DD-A1EG-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89414162:89414306:89415315:89415482:89421076:89421143,	89415316	89415482	89415395	89415395	Frame_Shift_Del	T	-	p.L786fs
LIHC	TCGA-DD-A1EG-01	HERC3	ENST00000264345.3,ENST00000402738.1	chr4	89588606:89588639:89589042:89589232:89591010:89591174,	89589043	89589232	89589054	89589054	Frame_Shift_Del	T	-	p.S485fs
LIHC	TCGA-DD-A1EG-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000506705.1,ENST00000505590.1,ENST00000512499.1,ENST00000504894.1,ENST00000504125.1,ENST00000503416.1	chr4	100060293:100060299:100062691:100062833:100063829:100063931,	100062692	100062833	100062775	100062775	Frame_Shift_Del	C	-	p.G79fs
LIHC	TCGA-DD-A1EG-01	ADH6	ENST00000394899.2,ENST00000507484.1,ENST00000407820.2,ENST00000237653.7	chr4	100126081:100126220:100128602:100128738:100129824:100129971,	100128603	100128738	100128648	100128648	Frame_Shift_Del	G	-	p.Q307fs
LIHC	TCGA-DD-A1EG-01	ADH6	ENST00000394899.2,ENST00000507484.1,ENST00000407820.2,ENST00000237653.7	chr4	100126081:100126220:100128602:100128738:100129824:100129971,	100128603	100128738	100128673	100128673	Frame_Shift_Del	G	-	p.A298fs
LIHC	TCGA-DD-A1EG-01	ADH1A	ENST00000209668.2	chr4	100197523:100197805:100200582:100200721:100201300:100201436,	100200583	100200721	100200620	100200620	Frame_Shift_Del	T	-	p.I356fs
LIHC	TCGA-DD-A1EG-01	TRMT10A	ENST00000394877.3,ENST00000273962.3,ENST00000394876.2	chr4	100469769:100470513:100472041:100472147:100474941:100475091,	100472042	100472147	100472082	100472082	Frame_Shift_Del	A	-	p.F237fs
LIHC	TCGA-DD-A1EG-01	PPP3CA	ENST00000523694.2,ENST00000507176.1,ENST00000394854.3,ENST00000394853.4	chr4	101982243:101982318:101984388:101984514:102001688:102001783,	101984389	101984514	101984420	101984420	Frame_Shift_Del	A	-	p.F350fs
LIHC	TCGA-DD-A1EG-01	SLC39A8	ENST00000394833.2,ENST00000356736.4,ENST00000424970.2,ENST00000510255.1,ENST00000512657.1	chr4	103226145:103226268:103228592:103228762:103236824:103236896,	103228593	103228762	103228622	103228622	Frame_Shift_Del	A	-	p.S175fs
LIHC	TCGA-DD-A1EG-01	NFKB1	ENST00000505458.1,ENST00000394820.4,ENST00000600343.1,ENST00000226574.4	chr4	103522051:103522166:103527652:103527854:103528306:103528476,	103527653	103527854	103527716	103527716	Frame_Shift_Del	G	-	p.G606fs
LIHC	TCGA-DD-A1EG-01	NFKB1	ENST00000505458.1,ENST00000394820.4,ENST00000600343.1,ENST00000226574.4	chr4	103533590:103533763:103534581:103534738:103537590:103538072,	103534582	103534738	103534608	103534608	Frame_Shift_Del	G	-	p.L873fs
LIHC	TCGA-DD-A1EG-01	SLC9B1	ENST00000504216.1,ENST00000296422.7	chr4	103806205:103806485:103826670:103826807:103827692:103827801,103822259:103822489:103826670:103826807:103827692:103827801,	103826671	103826807	103826686	103826686	Frame_Shift_Del	G	-	p.P439fs
LIHC	TCGA-DD-A1EG-01	SLC9B2	ENST00000362026.3,ENST00000394785.3,ENST00000339611.4	chr4	103971396:103971539:103978957:103979128:103987483:103987664,	103978958	103979128	103979005	103979005	Frame_Shift_Del	A	-	p.L132fs
LIHC	TCGA-DD-A1EG-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104044027:104044246:104053849:104054053:104054851:104055049,	104053850	104054053	104053914	104053914	Frame_Shift_Del	T	-	p.N2287fs
LIHC	TCGA-DD-A1EG-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104053849:104054053:104054851:104055049:104057297:104057516,	104054852	104055049	104054938	104054938	Frame_Shift_Del	T	-	p.I2212fs
LIHC	TCGA-DD-A1EG-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104062906:104063065:104064404:104064563:104065487:104065775,	104064405	104064563	104064492	104064492	Frame_Shift_Del	T	-	p.K1739fs
LIHC	TCGA-DD-A1EG-01	CENPE	ENST00000265148.3,ENST00000380026.3,ENST00000503705.1	chr4	104072392:104072534:104074203:104074407:104079456:104079615,	104074204	104074407	104074367	104074367	Frame_Shift_Del	T	-	p.N1025fs
LIHC	TCGA-DD-A1EG-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157065	106157065	Frame_Shift_Del	C	-	p.P656fs
LIHC	TCGA-DD-A1EG-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157462	106157462	Frame_Shift_Del	A	-	p.E788fs
LIHC	TCGA-DD-A1EG-01	NPNT	ENST00000305572.8,ENST00000379987.2,ENST00000514622.1,ENST00000504304.1,ENST00000514837.1	chr4	106819057:106819158:106848492:106848585:106858165:106858285,	106848493	106848585	106848569	106848569	Frame_Shift_Del	A	-	p.G83fs
LIHC	TCGA-DD-A1EG-01	NPNT	ENST00000379987.2,ENST00000427316.2,ENST00000453617.2,ENST00000503451.1,ENST00000514837.1	chr4	106861670:106861793:106863463:106863859:106879627:106879714,	106863464	106863859	106863534	106863534	Frame_Shift_Del	G	-	p.K278fs
LIHC	TCGA-DD-A1EG-01	TBCK	ENST00000467183.2,ENST00000394708.2,ENST00000432496.2,ENST00000514689.1,ENST00000510927.1,ENST00000394706.3,ENST00000515705.1,ENST00000361687.4,ENST00000273980.5	chr4	107037475:107037535:107092251:107092427:107114765:107114927,	107092252	107092427	107092383	107092383	Frame_Shift_Del	A	-	p.C702fs
LIHC	TCGA-DD-A1EG-01	PAPSS1	ENST00000511304.1,ENST00000265174.4	chr4	108575850:108576056:108578051:108578163:108581114:108581228,	108578052	108578163	108578117	108578117	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A1EG-01	ETNPPL	ENST00000296486.3,ENST00000510706.1,ENST00000512646.1,ENST00000411864.2	chr4	109667554:109667685:109667917:109668007:109669160:109669315,	109667918	109668007	109667958	109667958	Frame_Shift_Del	T	-	p.R378fs
LIHC	TCGA-DD-A1EG-01	COL25A1	ENST00000399127.1	chr4	109861694:109861802:109863364:109863424:109895522:109895549,	109863365	109863424	109863414	109863414	Frame_Shift_Del	C	-	p.G168fs
LIHC	TCGA-DD-A1EG-01	ELOVL6	ENST00000302274.3,ENST00000506625.1,ENST00000394607.3	chr4	110972881:110972918:110980758:110980910:111026652:111026784,	110980759	110980910	110980822	110980822	Frame_Shift_Del	A	-	p.Y104fs
LIHC	TCGA-DD-A1EG-01	ENPEP	ENST00000265162.5	chr4	111412188:111412320:111427792:111427913:111430808:111430963,	111427793	111427913	111427870	111427870	Frame_Shift_Del	T	-	p.Y332fs
LIHC	TCGA-DD-A1EG-01	AP1AR	ENST00000274000.5	chr4	113181921:113182018:113186164:113186223:113186889:113186963,113184143:113184242:113186164:113186223:113186889:113186963,	113186165	113186223	113186179	113186179	Frame_Shift_Del	A	-	p.R132fs
LIHC	TCGA-DD-A1EG-01	ALPK1	ENST00000458497.1,ENST00000515330.1,ENST00000177648.9,ENST00000505127.1	chr4	113298885:113299054:113303553:113303708:113332982:113333181,	113303554	113303708	113303594	113303594	Frame_Shift_Del	A	-	p.A54fs
LIHC	TCGA-DD-A1EG-01	ANK2	ENST00000394537.3,ENST00000503271.1,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000503423.1,ENST00000264366.6	chr4	114176890:114177088:114179205:114179304:114179468:114179567,	114179206	114179304	114179211	114179211	Frame_Shift_Del	T	-	p.G398fs
LIHC	TCGA-DD-A1EG-01	CAMK2D	ENST00000505990.1,ENST00000394522.3,ENST00000394526.2,ENST00000379773.2,ENST00000514328.1,ENST00000515496.1,ENST00000342666.5,ENST00000454265.2,ENST00000508738.1,ENST00000429180.1,ENST00000394524.3,ENST00000296402.5,ENST00000511664.1,ENST00000418639.2	chr4	114530307:114530362:114582868:114582928:114680475:114680570,	114582869	114582928	114582886	114582886	Frame_Shift_Del	A	-	p.L68fs
LIHC	TCGA-DD-A1EG-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823987	114823987	Frame_Shift_Del	G	-	p.R415fs
LIHC	TCGA-DD-A1EG-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824686	114824686	Frame_Shift_Del	A	-	p.Y182fs
LIHC	TCGA-DD-A1EG-01	SYNPO2	ENST00000434046.2,ENST00000307142.4,ENST00000504178.1,ENST00000429713.2	chr4	119944625:119944736:119947781:119948593:119950999:119953008,	119947782	119948593	119948337	119948337	Frame_Shift_Del	C	-	p.I271fs
LIHC	TCGA-DD-A1EG-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120193115	120193115	Frame_Shift_Del	T	-	p.N700fs
LIHC	TCGA-DD-A1EG-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120194786:120194863:120212319:120212416:120213492:120215793,	120212320	120212416	120212345	120212345	Frame_Shift_Del	G	-	p.L759fs
LIHC	TCGA-DD-A1EG-01	PRDM5	ENST00000264808.3,ENST00000502409.1	chr4	121737607:121737729:121737986:121738079:121739507:121739682,	121737987	121738079	121738028	121738028	Frame_Shift_Del	A	-	p.F234fs
LIHC	TCGA-DD-A1EG-01	TNIP3	ENST00000507879.1,ENST00000057513.3,ENST00000509841.1,ENST00000515605.1,ENST00000511909.1,ENST00000454328.1	chr4	122063880:122063931:122068203:122068329:122071257:122071270,	122068204	122068329	122068264	122068264	Frame_Shift_Del	T	-	p.K225fs
LIHC	TCGA-DD-A1EG-01	ANXA5	ENST00000501272.2	chr4	122602825:122602916:122604518:122604632:122605831:122605920,122602825:122602916:122604518:122604632:122607442:122607527,122602825:122602916:122604518:122604632:122617735:122617779,	122604519	122604632	122604531	122604531	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-DD-A1EG-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122749556:122749660:122749773:122749883:122754385:122754550,	122749774	122749883	122749829	122749829	Frame_Shift_Del	T	-	p.K577fs
LIHC	TCGA-DD-A1EG-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123111154:123111234:123113383:123113534:123117789:123117946,	123113384	123113534	123113408	123113408	Frame_Shift_Del	A	-	p.E309fs
LIHC	TCGA-DD-A1EG-01	INTU	ENST00000503626.1,ENST00000503952.1,ENST00000335251.6,ENST00000296461.5	chr4	128577790:128577876:128584535:128584739:128590190:128590309,	128584536	128584739	128584582	128584582	Frame_Shift_Del	C	-	p.S272fs
LIHC	TCGA-DD-A1EG-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000354456.3,ENST00000427266.1,ENST00000512292.1,ENST00000507377.1	chr4	129028293:129028468:129035724:129035897:129042980:129043343,	129035725	129035897	129035772	129035772	Frame_Shift_Del	A	-	p.K346fs
LIHC	TCGA-DD-A1EG-01	LARP1B	ENST00000503725.1,ENST00000508648.1	chr4	129128410:129128538:129131010:129131148:129141509:129141595,	129131011	129131148	129131107	129131107	Frame_Shift_Del	C	-	p.P883fs
LIHC	TCGA-DD-A1EG-01	SCLT1	ENST00000511426.1,ENST00000503401.1	chr4	129960195:129960251:129964549:129964622:129965147:129965206,129960384:129961367:129964549:129964622:129965147:129965206,	129964550	129964622	129964589	129964589	Frame_Shift_Del	T	-	p.K65fs
LIHC	TCGA-DD-A1EG-01	ELF2	ENST00000379550.1,ENST00000265495.4,ENST00000394235.2	chr4	139994607:139994721:140046317:140046483:140058783:140059021,	140046318	140046483	140046473	140046473	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-DD-A1EG-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.K613fs
LIHC	TCGA-DD-A1EG-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291484	140291484	Frame_Shift_Del	A	-	p.K628fs
LIHC	TCGA-DD-A1EG-01	SETD7	ENST00000506866.2,ENST00000274031.3	chr4	140444507:140444589:140450184:140450374:140454318:140454520,	140450185	140450374	140450342	140450342	Frame_Shift_Del	T	-	p.E135fs
LIHC	TCGA-DD-A1EG-01	SETD7	ENST00000506866.2,ENST00000274031.3	chr4	140450184:140450374:140454318:140454520:140468073:140468203,	140454319	140454520	140454367	140454367	Frame_Shift_Del	C	-	p.G108fs
LIHC	TCGA-DD-A1EG-01	MGST2	ENST00000503816.1	chr4	140587181:140587231:140599696:140599796:140608813:140608894,140587181:140587231:140599696:140599796:140624608:140624690,140587181:140587231:140599696:140599796:140616350:140616421,	140599697	140599796	140599738	140599738	Frame_Shift_Del	A	-	p.K34fs
LIHC	TCGA-DD-A1EG-01	TBC1D9	ENST00000442267.2	chr4	141545269:141545373:141545467:141545542:141548594:141548681,	141545468	141545542	141545512	141545512	Frame_Shift_Del	C	-	p.G977fs
LIHC	TCGA-DD-A1EG-01	INPP4B	ENST00000308502.4,ENST00000506297.1,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000514525.1,ENST00000508116.1,ENST00000511838.1,ENST00000510812.1,ENST00000262992.4	chr4	143159016:143159164:143181644:143181717:143191815:143191927,	143181645	143181717	143181670	143181670	Frame_Shift_Del	T	-	p.K221fs
LIHC	TCGA-DD-A1EG-01	SMARCA5	ENST00000283131.3	chr4	144466622:144466736:144467077:144467200:144467928:144468061,	144467078	144467200	144467135	144467135	Frame_Shift_Del	A	-	p.K819fs
LIHC	TCGA-DD-A1EG-01	ABCE1	ENST00000507193.1,ENST00000296577.4	chr4	146031526:146031596:146032119:146032216:146033390:146033480,	146032120	146032216	146032133	146032133	Frame_Shift_Del	A	-	p.L209fs
LIHC	TCGA-DD-A1EG-01	ABCE1	ENST00000507193.1,ENST00000296577.4	chr4	146031526:146031596:146032119:146032216:146033390:146033480,	146032120	146032216	146032184	146032184	Frame_Shift_Del	T	-	p.A226fs
LIHC	TCGA-DD-A1EG-01	ABCE1	ENST00000507193.1,ENST00000502803.1,ENST00000296577.4	chr4	146041119:146041305:146042325:146042385:146042484:146042543,	146042326	146042385	146042334	146042334	Frame_Shift_Del	A	-	p.K385fs
LIHC	TCGA-DD-A1EG-01	ABCE1	ENST00000504683.1,ENST00000507193.1,ENST00000296577.4	chr4	146044366:146044509:146044629:146044752:146046141:146046253,	146044630	146044752	146044645	146044645	Frame_Shift_Del	A	-	p.A511fs
LIHC	TCGA-DD-A1EG-01	OTUD4	ENST00000454497.2,ENST00000455611.2,ENST00000447906.2	chr4	146065462:146065586:146067418:146067581:146071664:146071851,	146067419	146067581	146067468	146067468	Frame_Shift_Del	A	-	p.L394fs
LIHC	TCGA-DD-A1EG-01	OTUD4	ENST00000454497.2,ENST00000455611.2,ENST00000447906.2	chr4	146065462:146065586:146067418:146067581:146071664:146071851,	146067419	146067581	146067551	146067551	Frame_Shift_Del	A	-	p.F365fs
LIHC	TCGA-DD-A1EG-01	OTUD4	ENST00000454497.2,ENST00000505976.1,ENST00000455611.2,ENST00000514973.1,ENST00000447906.2	chr4	146077087:146077148:146080654:146080787:146083791:146083873,	146080655	146080787	146080749	146080749	Frame_Shift_Del	T	-	p.T114fs
LIHC	TCGA-DD-A1EG-01	SMAD1	ENST00000515385.1,ENST00000394092.2,ENST00000302085.4	chr4	146463733:146463850:146467854:146468076:146474935:146475069,	146467855	146468076	146467920	146467920	Frame_Shift_Del	A	-	p.N281fs
LIHC	TCGA-DD-A1EG-01	SLC10A7	ENST00000394059.4,ENST00000335472.7,ENST00000432059.2,ENST00000507030.1,ENST00000511315.1,ENST00000394062.3	chr4	147425000:147425076:147431064:147431201:147438189:147438272,	147431065	147431201	147431101	147431101	Frame_Shift_Del	A	-	p.L95fs
LIHC	TCGA-DD-A1EG-01	LRBA	ENST00000510413.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000515096.1,ENST00000510157.1,ENST00000357115.3	chr4	151186717:151186964:151203601:151203798:151207084:151207186,151199004:151199156:151203601:151203798:151207084:151207186,	151203602	151203798	151203619	151203619	Frame_Shift_Del	T	-	p.T2767fs
LIHC	TCGA-DD-A1EG-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000503716.1,ENST00000535741.1,ENST00000509835.1,ENST00000357115.3	chr4	151246960:151247050:151271143:151271311:151336589:151336742,	151271144	151271311	151271199	151271199	Frame_Shift_Del	A	-	p.L2436fs
LIHC	TCGA-DD-A1EG-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151770573:151770727:151771875:151772054:151773036:151774095,	151771876	151772054	151771994	151771994	Frame_Shift_Del	T	-	p.R1297fs
LIHC	TCGA-DD-A1EG-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151792496:151792605:151793814:151793907:151814203:151814301,	151793815	151793907	151793818	151793818	Frame_Shift_Del	G	-	p.P752fs
LIHC	TCGA-DD-A1EG-01	MND1	ENST00000509752.1,ENST00000240488.3,ENST00000504860.1	chr4	154315413:154315488:154318370:154318485:154330122:154330167,	154318371	154318485	154318430	154318430	Frame_Shift_Del	A	-	p.L137fs
LIHC	TCGA-DD-A1EG-01	DCHS2	ENST00000339452.1	chr4	155249244:155249344:155250674:155250862:155253629:155254646,	155250675	155250862	155250752	155250752	Frame_Shift_Del	A	-	p.Y826fs
LIHC	TCGA-DD-A1EG-01	FGB	ENST00000498375.2	chr4	155484189:155484284:155486337:155487151:155487640:155487674,	155486338	155487151	155487038	155487038	Frame_Shift_Del	C	-	p.P65fs
LIHC	TCGA-DD-A1EG-01	FGB	ENST00000497097.1,ENST00000502545.1	chr4	155484189:155484284:155486959:155487151:155487640:155487674,	155486960	155487151	155487038	155487038	Frame_Shift_Del	C	-	p.P65fs
LIHC	TCGA-DD-A1EG-01	TDO2	ENST00000536354.2,ENST00000506072.1,ENST00000507590.1	chr4	156825169:156825275:156826218:156826309:156828873:156828944,	156826219	156826309	156826223	156826223	Frame_Shift_Del	A	-	p.E49fs
LIHC	TCGA-DD-A1EG-01	GRIA2	ENST00000323661.6	chr4	158281047:158281295:158282689:158282804:158283950:158283973,158282161:158282276:158282689:158282804:158283950:158283973,	158282690	158282804	158282802	158282802	Frame_Shift_Del	A	-	p.K802fs
LIHC	TCGA-DD-A1EG-01	TMEM144	ENST00000296529.6	chr4	159154052:159154134:159156589:159156657:159158676:159158795,	159156590	159156657	159156621	159156621	Frame_Shift_Del	G	-	p.W176fs
LIHC	TCGA-DD-A1EG-01	FNIP2	ENST00000264433.6,ENST00000512986.1,ENST00000379346.3	chr4	159780729:159780818:159782493:159782640:159782758:159782928,	159782494	159782640	159782571	159782571	Frame_Shift_Del	A	-	p.E409fs
LIHC	TCGA-DD-A1EG-01	RAPGEF2	ENST00000264431.4	chr4	160264445:160264556:160265187:160265211:160266257:160266481,	160265188	160265211	160265209	160265209	Frame_Shift_Del	G	-	p.L931fs
LIHC	TCGA-DD-A1EG-01	RAPGEF2	ENST00000264431.4	chr4	160274638:160275198:160277004:160277310:160279265:160281321,	160277005	160277310	160277092	160277092	Frame_Shift_Del	C	-	p.S1419fs
LIHC	TCGA-DD-A1EG-01	NAF1	ENST00000274054.2	chr4	164050330:164050500:164054305:164054408:164058350:164058402,	164054306	164054408	164054355	164054355	Frame_Shift_Del	T	-	p.K328fs
LIHC	TCGA-DD-A1EG-01	NAF1	ENST00000274054.2,ENST00000509232.1,ENST00000422287.2	chr4	164061374:164061535:164066933:164067016:164069492:164069586,	164066934	164067016	164066957	164066957	Frame_Shift_Del	T	-	p.S232fs
LIHC	TCGA-DD-A1EG-01	SPOCK3	ENST00000507370.1,ENST00000541354.1,ENST00000421836.2,ENST00000511269.1,ENST00000504953.1,ENST00000511905.1,ENST00000515143.1,ENST00000534949.1,ENST00000505187.1,ENST00000502821.1,ENST00000511531.1,ENST00000512648.1,ENST00000512681.1,ENST00000357154.3,ENST00000502330.1,ENST00000357545.4,ENST00000506886.1,ENST00000507137.1,ENST00000541637.1	chr4	167675792:167675880:167713320:167713440:167810280:167810395,	167713321	167713440	167713372	167713372	Frame_Shift_Del	T	-	p.S223fs
LIHC	TCGA-DD-A1EG-01	DDX60L	ENST00000511577.1,ENST00000260184.7	chr4	169294816:169294959:169296527:169296675:169299504:169299626,	169296528	169296675	169296556	169296556	Frame_Shift_Del	T	-	p.K1535fs
LIHC	TCGA-DD-A1EG-01	DDX60L	ENST00000511577.1,ENST00000260184.7	chr4	169294816:169294959:169296527:169296675:169299504:169299626,	169296528	169296675	169296621	169296621	Frame_Shift_Del	G	-	p.L1514fs
LIHC	TCGA-DD-A1EG-01	CBR4	ENST00000306193.3	chr4	169815720:169815916:169923221:169923356:169927905:169927939,169908740:169911479:169923221:169923356:169927905:169927939,	169923222	169923356	169923301	169923301	Frame_Shift_Del	T	-	p.K152fs
LIHC	TCGA-DD-A1EG-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170051196:170051307:170057468:170057771:170076630:170076726,	170057469	170057771	170057769	170057769	Frame_Shift_Del	A	-	p.F256fs
LIHC	TCGA-DD-A1EG-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170384393:170384546:170398274:170398503:170398582:170398648,	170398275	170398503	170398444	170398444	Frame_Shift_Del	T	-	p.K727fs
LIHC	TCGA-DD-A1EG-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170398274:170398503:170398582:170398648:170400553:170400685,	170398583	170398648	170398598	170398598	Frame_Shift_Del	G	-	p.T702fs
LIHC	TCGA-DD-A1EG-01	CLCN3	ENST00000515420.1	chr4	170616781:170616843:170618339:170618430:170618511:170618885,	170618340	170618430	170618403	170618403	Frame_Shift_Del	T	-	p.F361fs
LIHC	TCGA-DD-A1EG-01	FBXO8	ENST00000515664.1,ENST00000503293.1,ENST00000393674.2	chr4	175158509:175158750:175160144:175160341:175162250:175162369,	175160145	175160341	175160246	175160246	Frame_Shift_Del	G	-	p.P224fs
LIHC	TCGA-DD-A1EG-01	HPGD	ENST00000504433.1,ENST00000296521.7,ENST00000296522.6,ENST00000542498.1,ENST00000514584.1,ENST00000510901.1,ENST00000512410.1,ENST00000506910.1	chr4	175429846:175429943:175439121:175439228:175443094:175443214,	175439122	175439228	175439139	175439139	Frame_Shift_Del	T	-	p.T103fs
LIHC	TCGA-DD-A1EG-01	GPM6A	ENST00000512509.1	chr4	176573063:176573138:176594842:176594987:176622725:176622918,	176594843	176594987	176594872	176594872	Frame_Shift_Del	C	-	p.D116fs
LIHC	TCGA-DD-A1EG-01	GPM6A	ENST00000512610.1,ENST00000513667.1,ENST00000393658.2,ENST00000507520.1,ENST00000515090.1,ENST00000505375.1,ENST00000502754.1,ENST00000280187.7,ENST00000506894.1,ENST00000503397.1,ENST00000505561.1	chr4	176573090:176573138:176594830:176594987:176622725:176622918,	176594831	176594987	176594872	176594872	Frame_Shift_Del	C	-	p.D116fs
LIHC	TCGA-DD-A1EG-01	GPM6A	ENST00000506894.1	chr4	176594904:176594987:176622725:176622918:176733341:176733400,176594904:176594987:176622725:176622918:176923459:176923483,	176622726	176622918	176622731	176622731	Frame_Shift_Del	A	-	p.F75fs
LIHC	TCGA-DD-A1EG-01	WDR17	ENST00000507824.2,ENST00000280190.4,ENST00000508596.1,ENST00000393643.2	chr4	177032725:177032854:177036946:177037130:177041017:177041248,	177036947	177037130	177036998	177036998	Frame_Shift_Del	A	-	p.K60fs
LIHC	TCGA-DD-A1EG-01	WDR17	ENST00000507824.2,ENST00000280190.4,ENST00000508596.1,ENST00000393643.2	chr4	177032725:177032854:177036946:177037130:177041017:177041248,	177036947	177037130	177037098	177037098	Frame_Shift_Del	A	-	p.Q92fs
LIHC	TCGA-DD-A1EG-01	WDR17	ENST00000507824.2,ENST00000280190.4,ENST00000508596.1,ENST00000393643.2	chr4	177063133:177063220:177067145:177067310:177069283:177069486,	177067146	177067310	177067252	177067252	Frame_Shift_Del	T	-	p.F546fs
LIHC	TCGA-DD-A1EG-01	SPATA4	ENST00000515234.1,ENST00000280191.2	chr4	177113777:177113998:177114108:177114227:177114603:177114704,	177114109	177114227	177114210	177114210	Frame_Shift_Del	T	-	p.K122fs
LIHC	TCGA-DD-A1EG-01	SPCS3	ENST00000507678.1,ENST00000503362.1	chr4	177245331:177245408:177248312:177248428:177249348:177249504,	177248313	177248428	177248399	177248399	Frame_Shift_Del	T	-	p.Y127fs
LIHC	TCGA-DD-A1EG-01	NEIL3	ENST00000264596.3	chr4	178262629:178262796:178272533:178272703:178274461:178274882,	178272534	178272703	178272689	178272689	Frame_Shift_Del	C	-	p.T342fs
LIHC	TCGA-DD-A1EG-01	DCTD	ENST00000507543.1,ENST00000438320.2,ENST00000510307.1,ENST00000514754.1,ENST00000503182.1,ENST00000357067.3,ENST00000510370.1,ENST00000512766.1	chr4	183815706:183815758:183836075:183836211:183836613:183836713,	183836076	183836211	183836143	183836143	Frame_Shift_Del	C	-	p.G59fs
LIHC	TCGA-DD-A1EG-01	WWC2	ENST00000378925.3,ENST00000448232.2,ENST00000513834.1	chr4	184020644:184020775:184114751:184114861:184129105:184129309,	184114752	184114861	184114802	184114802	Frame_Shift_Del	G	-	p.W61fs
LIHC	TCGA-DD-A1EG-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184932371	184932371	Frame_Shift_Del	A	-	p.K794fs
LIHC	TCGA-DD-A1EG-01	LRP2BP	ENST00000510776.1,ENST00000362004.3,ENST00000328559.7,ENST00000505916.1	chr4	186288286:186288399:186291793:186291968:186294009:186294233,	186291794	186291968	186291820	186291820	Frame_Shift_Del	T	-	p.T321fs
LIHC	TCGA-DD-A1EG-01	LRP2BP	ENST00000510776.1,ENST00000362004.3,ENST00000328559.7,ENST00000505916.1	chr4	186295288:186295394:186295472:186295615:186296766:186296880,	186295473	186295615	186295488	186295488	Frame_Shift_Del	T	-	p.N155fs
LIHC	TCGA-DD-A1EG-01	LRP2BP	ENST00000505916.1	chr4	186298062:186298172:186299234:186299361:186315932:186315993,	186299235	186299361	186299246	186299246	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-DD-A1EG-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186545088	186545088	Frame_Shift_Del	G	-	p.Q495fs
LIHC	TCGA-DD-A1EG-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186545314	186545314	Frame_Shift_Del	G	-	p.P419fs
LIHC	TCGA-DD-A1EG-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186545427	186545427	Frame_Shift_Del	G	-	p.R382fs
LIHC	TCGA-DD-A1EG-01	SORBS2	ENST00000437304.2	chr4	186583388:186583396:186598150:186598792:186599576:186599632,	186598151	186598792	186598564	186598564	Frame_Shift_Del	T	-	p.I27fs
LIHC	TCGA-DD-A1EG-01	FAM149A	ENST00000513030.1,ENST00000514829.1,ENST00000227065.4,ENST00000356371.5,ENST00000503432.1,ENST00000389354.5,ENST00000502970.1,ENST00000515078.1,ENST00000514153.1	chr4	187075621:187075792:187077153:187077344:187078718:187078873,	187077154	187077344	187077225	187077225	Frame_Shift_Del	T	-	p.V443fs
LIHC	TCGA-DD-A1EG-01	FAM149A	ENST00000513030.1,ENST00000514829.1,ENST00000227065.4,ENST00000356371.5,ENST00000503432.1,ENST00000389354.5,ENST00000502970.1,ENST00000515078.1,ENST00000514153.1	chr4	187075621:187075792:187077153:187077344:187078718:187078873,	187077154	187077344	187077228	187077228	Frame_Shift_Del	C	-	p.S444fs
LIHC	TCGA-DD-A1EG-01	F11	ENST00000452239.1,ENST00000403665.2,ENST00000264692.4	chr4	187197008:187197050:187197384:187197544:187201165:187201275,	187197385	187197544	187197501	187197501	Frame_Shift_Del	T	-	p.F187fs
LIHC	TCGA-DD-A1EG-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540501	187540501	Frame_Shift_Del	T	-	p.K2413fs
LIHC	TCGA-DD-A1EG-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541269	187541269	Frame_Shift_Del	T	-	p.K2157fs
LIHC	TCGA-DD-A1EG-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542789	187542789	Frame_Shift_Del	T	-	p.T1651fs
LIHC	TCGA-DD-A1EG-01	FRG1	ENST00000533157.1,ENST00000514482.1,ENST00000531991.2,ENST00000226798.4	chr4	190873316:190873442:190874222:190874280:190876191:190876305,	190874223	190874280	190874264	190874264	Frame_Shift_Del	A	-	p.K101fs
LIHC	TCGA-DD-A1EG-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163580	163580	Frame_Shift_Del	C	-	p.S775fs
LIHC	TCGA-DD-A1EG-01	PLEKHG4B	ENST00000504041.1,ENST00000283426.6	chr5	169454:169707:171157:171247:171328:171559,	171158	171247	171191	171191	Frame_Shift_Del	A	-	p.K899fs
LIHC	TCGA-DD-A1EG-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	474997:475247:475675:475786:476134:476207,	475676	475786	475755	475755	Frame_Shift_Del	G	-	p.P724fs
LIHC	TCGA-DD-A1EG-01	CEP72	ENST00000264935.5	chr5	633883:634062:635486:635699:637631:637933,	635487	635699	635531	635531	Frame_Shift_Del	G	-	p.G246fs
LIHC	TCGA-DD-A1EG-01	SLC12A7	ENST00000264930.5	chr5	1088420:1088475:1089096:1089243:1093647:1093770,	1089097	1089243	1089224	1089224	Frame_Shift_Del	A	-	p.F121fs
LIHC	TCGA-DD-A1EG-01	TERT	ENST00000460137.2,ENST00000310581.5,ENST00000334602.6,ENST00000296820.5,ENST00000484238.2	chr5	1253842:1253946:1254482:1254620:1255401:1255526,	1254483	1254620	1254587	1254587	Frame_Shift_Del	G	-	p.P1064fs
LIHC	TCGA-DD-A1EG-01	CLPTM1L	ENST00000503042.1,ENST00000507807.1,ENST00000515719.1,ENST00000320895.5,ENST00000320927.6,ENST00000503534.1,ENST00000506641.1	chr5	1318469:1318568:1320730:1320846:1321749:1321794,	1320731	1320846	1320817	1320817	Frame_Shift_Del	A	-	p.F482fs
LIHC	TCGA-DD-A1EG-01	LPCAT1	ENST00000475622.1,ENST00000283415.3	chr5	1474071:1474225:1474674:1474800:1477518:1477601,	1474675	1474800	1474785	1474785	Frame_Shift_Del	G	-	p.S305fs
LIHC	TCGA-DD-A1EG-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000514127.1,ENST00000513888.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6600142:6600345:6602573:6602613:6604250:6604291,	6602574	6602613	6602610	6602610	Frame_Shift_Del	T	-	p.K654fs
LIHC	TCGA-DD-A1EG-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6607312:6607497:6609938:6610035:6611067:6611198,	6609939	6610035	6609972	6609972	Frame_Shift_Del	T	-	p.K430fs
LIHC	TCGA-DD-A1EG-01	ADCY2	ENST00000498598.1,ENST00000338316.4	chr5	7414776:7414883:7520850:7521012:7626279:7626429,	7520851	7521012	7520880	7520880	Frame_Shift_Del	G	-	p.V147fs
LIHC	TCGA-DD-A1EG-01	ADCY2	ENST00000537121.1,ENST00000338316.4	chr5	7743780:7743865:7757561:7757699:7766799:7766919,	7757562	7757699	7757571	7757571	Frame_Shift_Del	A	-	p.K657fs
LIHC	TCGA-DD-A1EG-01	CMBL	ENST00000296658.3	chr5	10280577:10280744:10282308:10282400:10286465:10286608,	10282309	10282400	10282342	10282342	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-DD-A1EG-01	MARCH6	ENST00000511802.1,ENST00000449913.2,ENST00000510792.1,ENST00000503788.1,ENST00000274140.5,ENST00000512449.1	chr5	10410264:10410388:10411444:10411649:10414544:10414614,	10411445	10411649	10411496	10411496	Frame_Shift_Del	A	-	p.A581fs
LIHC	TCGA-DD-A1EG-01	ROPN1L	ENST00000510520.1	chr5	10450063:10450225:10461295:10461471:10471921:10472141,	10461296	10461471	10461465	10461465	Frame_Shift_Del	A	-	p.E196fs
LIHC	TCGA-DD-A1EG-01	DNAH5	ENST00000265104.4	chr5	13727615:13727765:13729547:13729669:13735239:13735430,	13729548	13729669	13729623	13729623	Frame_Shift_Del	T	-	p.K3936fs
LIHC	TCGA-DD-A1EG-01	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830808	13830808	Frame_Shift_Del	T	-	p.T1987fs
LIHC	TCGA-DD-A1EG-01	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830840	13830840	Frame_Shift_Del	C	-	p.G1976fs
LIHC	TCGA-DD-A1EG-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14397151:14397263:14398988:14399179:14401071:14401173,	14398989	14399179	14398998	14398998	Frame_Shift_Del	A	-	p.E1478fs
LIHC	TCGA-DD-A1EG-01	ANKH	ENST00000284268.6	chr5	14758588:14758707:14769083:14769300:14871460:14871581,	14769084	14769300	14769179	14769179	Frame_Shift_Del	C	-	p.G73fs
LIHC	TCGA-DD-A1EG-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16676139:16676263:16680055:16680213:16681417:16681612,	16680056	16680213	16680083	16680083	Frame_Shift_Del	G	-	p.P1505fs
LIHC	TCGA-DD-A1EG-01	MYO10	ENST00000513882.1,ENST00000513610.1	chr5	16761572:16761655:16762153:16762222:16762653:16762746,	16762154	16762222	16762178	16762178	Frame_Shift_Del	A	-	p.F544fs
LIHC	TCGA-DD-A1EG-01	DROSHA	ENST00000442743.1,ENST00000513349.1,ENST00000344624.3,ENST00000512076.1,ENST00000511367.2	chr5	31495392:31495479:31504661:31504742:31508727:31508882,	31504662	31504742	31504676	31504676	Frame_Shift_Del	A	-	p.Y552fs
LIHC	TCGA-DD-A1EG-01	DROSHA	ENST00000344624.3,ENST00000511367.2	chr5	31515100:31515326:31521229:31521322:31526185:31526397,31515560:31515671:31521229:31521322:31526185:31526344,	31521230	31521322	31521250	31521250	Frame_Shift_Del	T	-	p.K309fs
LIHC	TCGA-DD-A1EG-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087365	32087365	Frame_Shift_Del	C	-	p.P1271fs
LIHC	TCGA-DD-A1EG-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087406	32087406	Frame_Shift_Del	C	-	p.L1284fs
LIHC	TCGA-DD-A1EG-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32088014	32088014	Frame_Shift_Del	G	-	p.W1487fs
LIHC	TCGA-DD-A1EG-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32090788	32090788	Frame_Shift_Del	C	-	p.P2412fs
LIHC	TCGA-DD-A1EG-01	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33549311:33549488:33561131:33561284:33576158:33577265,	33561132	33561284	33561182	33561182	Frame_Shift_Del	T	-	p.R1359fs
LIHC	TCGA-DD-A1EG-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963815	33963815	Frame_Shift_Del	T	-	p.N290fs
LIHC	TCGA-DD-A1EG-01	TTC23L	ENST00000502674.1,ENST00000505624.1,ENST00000514080.1,ENST00000506758.1	chr5	34845591:34845778:34850289:34850413:34863002:34863115,	34850290	34850413	34850362	34850362	Frame_Shift_Del	A	-	p.K110fs
LIHC	TCGA-DD-A1EG-01	RAD1	ENST00000325577.4	chr5	34911722:34911917:34914799:34915066:34915520:34915609,	34914800	34915066	34914858	34914858	Frame_Shift_Del	T	-	p.N47fs
LIHC	TCGA-DD-A1EG-01	BRIX1	ENST00000510960.1,ENST00000336767.5,ENST00000506023.1	chr5	34922321:34922392:34922643:34922693:34922799:34922873,	34922644	34922693	34922688	34922688	Frame_Shift_Del	A	-	p.Q144fs
LIHC	TCGA-DD-A1EG-01	DNAJC21	ENST00000342382.4,ENST00000382021.2	chr5	34941200:34941288:34944971:34945130:34945826:34945908,34941200:34941288:34944971:34945130:34945865:34945908,	34944972	34945130	34945053	34945053	Frame_Shift_Del	T	-	p.N355fs
LIHC	TCGA-DD-A1EG-01	DNAJC21	ENST00000382021.2	chr5	34944971:34945130:34945865:34945908:34950274:34950447,34944971:34945130:34945865:34945908:34949647:34949782,	34945866	34945908	34945873	34945873	Frame_Shift_Del	A	-	p.K385fs
LIHC	TCGA-DD-A1EG-01	DNAJC21	ENST00000514237.1,ENST00000303525.7	chr5	34944971:34945130:34945826:34945908:34950274:34950447,	34945827	34945908	34945873	34945873	Frame_Shift_Del	A	-	p.K385fs
LIHC	TCGA-DD-A1EG-01	AGXT2	ENST00000231420.6,ENST00000512135.1	chr5	35003867:35003966:35010104:35010254:35025867:35025938,35003867:35003966:35010104:35010254:35013058:35013150,	35010105	35010254	35010226	35010226	Frame_Shift_Del	T	-	p.N406fs
LIHC	TCGA-DD-A1EG-01	SPEF2	ENST00000505847.1,ENST00000509059.1,ENST00000505088.1,ENST00000510777.1,ENST00000440995.2,ENST00000356031.3	chr5	35618099:35618157:35628561:35628664:35641532:35641785,	35628562	35628664	35628621	35628621	Frame_Shift_Del	A	-	p.K40fs
LIHC	TCGA-DD-A1EG-01	IL7R	ENST00000509668.1,ENST00000303115.3	chr5	35873635:35873750:35874550:35874644:35875613:35875623,	35874551	35874644	35874637	35874637	Frame_Shift_Del	A	-	p.K266fs
LIHC	TCGA-DD-A1EG-01	UGT3A1	ENST00000507113.1,ENST00000503189.1,ENST00000274278.3	chr5	35957289:35957521:35965487:35966019:35968120:35968235,	35965488	35966019	35965845	35965845	Frame_Shift_Del	A	-	p.F162fs
LIHC	TCGA-DD-A1EG-01	UGT3A2	ENST00000513300.1,ENST00000282507.3	chr5	36039761:36039810:36048990:36049522:36051971:36052086,	36048991	36049522	36049148	36049148	Frame_Shift_Del	A	-	p.F229fs
LIHC	TCGA-DD-A1EG-01	LMBRD2	ENST00000296603.4	chr5	36117836:36118018:36122381:36122565:36122949:36123063,	36122382	36122565	36122474	36122474	Frame_Shift_Del	T	-	p.N343fs
LIHC	TCGA-DD-A1EG-01	SKP2	ENST00000508514.1	chr5	36152270:36152372:36152872:36153144:36177066:36177118,	36152873	36153144	36152991	36152991	Frame_Shift_Del	A	-	p.K43fs
LIHC	TCGA-DD-A1EG-01	SKP2	ENST00000274255.6,ENST00000274254.5,ENST00000513263.1	chr5	36166620:36166764:36168414:36168549:36170445:36170486,	36168415	36168549	36168531	36168531	Frame_Shift_Del	T	-	p.L218fs
LIHC	TCGA-DD-A1EG-01	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36251414:36251601:36253748:36253891:36255571:36255692,	36253749	36253891	36253807	36253807	Frame_Shift_Del	T	-	p.N370fs
LIHC	TCGA-DD-A1EG-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36608591:36608706:36629551:36629689:36671130:36671286,	36629552	36629689	36629597	36629597	Frame_Shift_Del	G	-	p.R76fs
LIHC	TCGA-DD-A1EG-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36676993:36677286:36679728:36679962:36680496:36680691,	36679729	36679962	36679895	36679895	Frame_Shift_Del	A	-	p.K343fs
LIHC	TCGA-DD-A1EG-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	37027460:37027514:37036480:37036589:37038703:37038840,	37036481	37036589	37036523	37036523	Frame_Shift_Del	A	-	p.K1969fs
LIHC	TCGA-DD-A1EG-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37057287:37057434:37058992:37059267:37060945:37061120,	37058993	37059267	37059022	37059022	Frame_Shift_Del	A	-	p.R2480fs
LIHC	TCGA-DD-A1EG-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1	chr5	37292980:37293087:37294430:37294567:37298969:37299080,	37294431	37294567	37294549	37294549	Frame_Shift_Del	A	-	p.L1271fs
LIHC	TCGA-DD-A1EG-01	GDNF	ENST00000515058.1	chr5	37816127:37816237:37834825:37834924:37839608:37839782,	37834826	37834924	37834886	37834886	Frame_Shift_Del	C	-	p.D5fs
LIHC	TCGA-DD-A1EG-01	LIFR	ENST00000503088.1,ENST00000263409.4,ENST00000453190.2	chr5	38499614:38499685:38502738:38502901:38504077:38504223,	38502739	38502901	38502761	38502761	Frame_Shift_Del	T	-	p.K526fs
LIHC	TCGA-DD-A1EG-01	RICTOR	ENST00000357387.3,ENST00000296782.5	chr5	38945592:38945826:38946569:38946654:38947365:38947543,	38946570	38946654	38946634	38946634	Frame_Shift_Del	A	-	p.F1445fs
LIHC	TCGA-DD-A1EG-01	DAB2	ENST00000320816.6	chr5	39381555:39381718:39382719:39383373:39388406:39388469,	39382720	39383373	39382920	39382920	Frame_Shift_Del	C	-	p.V360fs
LIHC	TCGA-DD-A1EG-01	TTC33	ENST00000511730.2	chr5	40730363:40730445:40746899:40747121:40755925:40756047,	40746900	40747121	40746946	40746946	Frame_Shift_Del	T	-	p.S59fs
LIHC	TCGA-DD-A1EG-01	PRKAA1	ENST00000296800.4,ENST00000397128.2,ENST00000506652.1,ENST00000509874.1	chr5	40771820:40771965:40775511:40775605:40777546:40777688,	40775512	40775605	40775573	40775573	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A1EG-01	C7	ENST00000313164.9,ENST00000508185.1	chr5	40936439:40936587:40937653:40937792:40945299:40945462,	40937654	40937792	40937768	40937768	Frame_Shift_Del	A	-	p.G181fs
LIHC	TCGA-DD-A1EG-01	C7	ENST00000313164.9	chr5	40937653:40937792:40945299:40945470:40947703:40947947,	40945300	40945470	40945402	40945402	Frame_Shift_Del	T	-	p.F225fs
LIHC	TCGA-DD-A1EG-01	C6	ENST00000475349.1,ENST00000337836.5,ENST00000263413.3	chr5	41161794:41161961:41172326:41172449:41176576:41176817,	41172327	41172449	41172373	41172373	Frame_Shift_Del	T	-	p.K415fs
LIHC	TCGA-DD-A1EG-01	OXCT1	ENST00000514723.1	chr5	41749702:41749709:41762212:41762302:41794104:41794180,41749702:41749709:41762212:41762302:41840552:41840613,	41762213	41762302	41762300	41762300	Frame_Shift_Del	C	-	p.G417fs
LIHC	TCGA-DD-A1EG-01	ZNF131	ENST00000509156.1,ENST00000399534.1	chr5	43123310:43123412:43161350:43162033:43173419:43173550,43139266:43139411:43161350:43162033:43173419:43173550,	43161351	43162033	43161406	43161406	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-DD-A1EG-01	ZNF131	ENST00000509156.1,ENST00000399534.1	chr5	43123310:43123412:43161350:43162033:43173419:43173550,43139266:43139411:43161350:43162033:43173419:43173550,	43161351	43162033	43161479	43161479	Frame_Shift_Del	A	-	p.E167fs
LIHC	TCGA-DD-A1EG-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43677880:43677908:43700220:43700339:43702722:43702838,	43700221	43700339	43700308	43700308	Frame_Shift_Del	G	-	p.L988fs
LIHC	TCGA-DD-A1EG-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000505180.1,ENST00000507812.1,ENST00000503888.1,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503193.1,ENST00000515166.1,ENST00000510303.2	chr5	50055476:50055566:50056125:50056196:50057654:50057721,	50056126	50056196	50056149	50056149	Frame_Shift_Del	A	-	p.N100fs
LIHC	TCGA-DD-A1EG-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000505180.1,ENST00000507812.1,ENST00000503888.1,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503193.1,ENST00000515166.1,ENST00000510303.2	chr5	50055476:50055566:50056125:50056196:50057654:50057721,	50056126	50056196	50056162	50056162	Frame_Shift_Del	C	-	p.S104fs
LIHC	TCGA-DD-A1EG-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3	chr5	50074393:50074484:50084356:50084423:50090040:50090166,	50084357	50084423	50084388	50084388	Frame_Shift_Del	A	-	p.T234fs
LIHC	TCGA-DD-A1EG-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3	chr5	50084356:50084423:50090040:50090166:50090686:50091251,	50090041	50090166	50090126	50090126	Frame_Shift_Del	A	-	p.K275fs
LIHC	TCGA-DD-A1EG-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50090040:50090166:50090686:50091251:50092815:50092866,	50090687	50091251	50091154	50091154	Frame_Shift_Del	T	-	p.L444fs
LIHC	TCGA-DD-A1EG-01	CDC20B	ENST00000513180.1,ENST00000381375.2,ENST00000296733.1,ENST00000334206.5	chr5	54415645:54415746:54416252:54416378:54420630:54420856,	54416253	54416378	54416269	54416269	Frame_Shift_Del	G	-	p.P442fs
LIHC	TCGA-DD-A1EG-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54552076:54552368:54555675:54555772:54557195:54557327,	54555676	54555772	54555705	54555705	Frame_Shift_Del	T	-	p.K1343fs
LIHC	TCGA-DD-A1EG-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54555675:54555772:54557195:54557327:54558457:54558760,	54557196	54557327	54557291	54557291	Frame_Shift_Del	G	-	p.L1289fs
LIHC	TCGA-DD-A1EG-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54581120:54581244:54581523:54581689:54585097:54585256,	54581524	54581689	54581553	54581553	Frame_Shift_Del	T	-	p.K401fs
LIHC	TCGA-DD-A1EG-01	IL6ST	ENST00000502326.3,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000583149.1,ENST00000336909.5,ENST00000381298.2	chr5	55238497:55238579:55243320:55243417:55247291:55247334,	55243321	55243417	55243370	55243370	Frame_Shift_Del	G	-	p.L631fs
LIHC	TCGA-DD-A1EG-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247869	55247869	Frame_Shift_Del	T	-	p.K529fs
LIHC	TCGA-DD-A1EG-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55260036:55260140:55264103:55264224:55265377:55265683,	55264104	55264224	55264171	55264171	Frame_Shift_Del	T	-	p.M142fs
LIHC	TCGA-DD-A1EG-01	ANKRD55	ENST00000341048.4	chr5	55422748:55422933:55439627:55439756:55455659:55455720,	55439628	55439756	55439651	55439651	Frame_Shift_Del	T	-	p.T197fs
LIHC	TCGA-DD-A1EG-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56170970	56170970	Frame_Shift_Del	G	-	p.G600fs
LIHC	TCGA-DD-A1EG-01	MAP3K1	ENST00000399503.3	chr5	56181779:56181890:56183204:56183347:56184052:56184184,	56183205	56183347	56183320	56183320	Frame_Shift_Del	G	-	p.L1410fs
LIHC	TCGA-DD-A1EG-01	PLK2	ENST00000514306.1	chr5	57754551:57754668:57754811:57754919:57755516:57755686,	57754812	57754919	57754856	57754856	Frame_Shift_Del	T	-	p.I113fs
LIHC	TCGA-DD-A1EG-01	DEPDC1B	ENST00000545085.1,ENST00000453022.2,ENST00000512078.1,ENST00000265036.5	chr5	59901516:59901683:59934576:59934717:59938638:59938683,	59934577	59934717	59934599	59934599	Frame_Shift_Del	A	-	p.F292fs
LIHC	TCGA-DD-A1EG-01	DEPDC1B	ENST00000545085.1,ENST00000453022.2,ENST00000512078.1,ENST00000265036.5	chr5	59901516:59901683:59934576:59934717:59938638:59938683,	59934577	59934717	59934668	59934668	Frame_Shift_Del	T	-	p.K269fs
LIHC	TCGA-DD-A1EG-01	C5orf64	ENST00000313303.7,ENST00000505642.1	chr5	60939161:60939227:60982709:60982897:60999692:60999884,	60982710	60982897	60982717	60982717	Frame_Shift_Del	A	-	p.R15fs
LIHC	TCGA-DD-A1EG-01	C5orf64	ENST00000313303.7,ENST00000505642.1	chr5	60939161:60939227:60982709:60982897:60999692:60999884,	60982710	60982897	60982890	60982890	Frame_Shift_Del	T	-	p.V73fs
LIHC	TCGA-DD-A1EG-01	KIF2A	ENST00000381103.2,ENST00000407818.3,ENST00000401507.3,ENST00000506857.1	chr5	61673487:61673589:61676944:61677080:61681310:61681455,	61676945	61677080	61677016	61677016	Frame_Shift_Del	T	-	p.D637fs
LIHC	TCGA-DD-A1EG-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63509428	63509428	Frame_Shift_Del	C	-	p.A92fs
LIHC	TCGA-DD-A1EG-01	CWC27	ENST00000508024.1,ENST00000485990.1,ENST00000381070.3	chr5	64079662:64079806:64081307:64081406:64082350:64082454,	64081308	64081406	64081314	64081314	Frame_Shift_Del	G	-	p.G135fs
LIHC	TCGA-DD-A1EG-01	CWC27	ENST00000545000.1,ENST00000381070.3	chr5	64267529:64267639:64272961:64273065:64313985:64314418,	64272962	64273065	64272992	64272992	Frame_Shift_Del	A	-	p.K395fs
LIHC	TCGA-DD-A1EG-01	ADAMTS6	ENST00000536360.1,ENST00000381052.4	chr5	64766604:64766969:64769403:64769779:64777169:64777244,	64769404	64769779	64769443	64769443	Frame_Shift_Del	C	-	p.E20fs
LIHC	TCGA-DD-A1EG-01	CENPK	ENST00000509397.1,ENST00000511841.1,ENST00000515497.1,ENST00000505960.1,ENST00000242872.3,ENST00000396679.1,ENST00000514814.1,ENST00000508421.1,ENST00000510768.1	chr5	64824369:64824405:64824745:64824844:64824943:64825026,	64824746	64824844	64824773	64824773	Frame_Shift_Del	T	-	p.N148fs
LIHC	TCGA-DD-A1EG-01	CENPK	ENST00000506282.2	chr5	64824369:64824405:64824745:64824876:64824943:64825026,	64824746	64824876	64824773	64824773	Frame_Shift_Del	T	-	p.N148fs
LIHC	TCGA-DD-A1EG-01	PPWD1	ENST00000514172.1	chr5	64872778:64872896:64875311:64875440:64878864:64878939,	64875312	64875440	64875364	64875364	Frame_Shift_Del	A	-	p.E425fs
LIHC	TCGA-DD-A1EG-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000511334.1,ENST00000538977.1,ENST00000510930.1,ENST00000261308.5	chr5	64872778:64872896:64875250:64875440:64878864:64878939,	64875251	64875440	64875364	64875364	Frame_Shift_Del	A	-	p.E425fs
LIHC	TCGA-DD-A1EG-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466714	65466714	Frame_Shift_Del	A	-	p.K476fs
LIHC	TCGA-DD-A1EG-01	CENPH	ENST00000514753.1,ENST00000283006.2	chr5	68490473:68490522:68491543:68491618:68498332:68498396,68490473:68490522:68491543:68491618:68492879:68492936,	68491544	68491618	68491580	68491580	Frame_Shift_Del	A	-	p.V92fs
LIHC	TCGA-DD-A1EG-01	MRPS36	ENST00000507022.1	chr5	68522168:68522228:68524026:68524214:68525034:68525058,68513612:68513698:68524026:68524214:68525034:68525058,	68524027	68524214	68524075	68524075	Frame_Shift_Del	T	-	p.I52fs
LIHC	TCGA-DD-A1EG-01	CCDC125	ENST00000511257.1,ENST00000396499.1,ENST00000396496.2	chr5	68581163:68581294:68588014:68588189:68590619:68590727,	68588015	68588189	68588055	68588055	Frame_Shift_Del	T	-	p.K353fs
LIHC	TCGA-DD-A1EG-01	RAD17	ENST00000509734.1	chr5	68666910:68666998:68667280:68667384:68667860:68667881,68666910:68666998:68667280:68667384:68669656:68669709,	68667281	68667384	68667354	68667354	Frame_Shift_Del	T	-	p.T4fs
LIHC	TCGA-DD-A1EG-01	RAD17	ENST00000354868.5,ENST00000506564.1,ENST00000305138.4,ENST00000361732.2,ENST00000354312.3,ENST00000345306.6	chr5	68667983:68668044:68669656:68669914:68670454:68670538,	68669657	68669914	68669907	68669907	Frame_Shift_Del	A	-	p.E98fs
LIHC	TCGA-DD-A1EG-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000513214.1,ENST00000354312.3,ENST00000521422.1,ENST00000345306.6	chr5	68689180:68689327:68692223:68692373:68695875:68695996,	68692224	68692373	68692240	68692240	Frame_Shift_Del	G	-	p.R491fs
LIHC	TCGA-DD-A1EG-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715345	68715345	Frame_Shift_Del	C	-	p.P45fs
LIHC	TCGA-DD-A1EG-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68716113	68716113	Frame_Shift_Del	T	-	p.F301fs
LIHC	TCGA-DD-A1EG-01	OCLN	ENST00000380766.2	chr5	68800027:68800121:68804967:68805646:68809774:68809936,68800027:68800121:68804967:68805646:68830520:68830666,	68804968	68805646	68805549	68805549	Frame_Shift_Del	A	-	p.Q211fs
LIHC	TCGA-DD-A1EG-01	NAIP	ENST00000194097.4,ENST00000508426.2,ENST00000517649.1	chr5	70299602:70299684:70307101:70307201:70308174:70308745,	70307102	70307201	70307175	70307175	Frame_Shift_Del	A	-	p.S199fs
LIHC	TCGA-DD-A1EG-01	NAIP	ENST00000194097.4,ENST00000508426.2,ENST00000517649.1	chr5	70299602:70299684:70307101:70307201:70308174:70308745,	70307102	70307201	70307197	70307197	Frame_Shift_Del	T	-	p.K191fs
LIHC	TCGA-DD-A1EG-01	GTF2H2	ENST00000330280.7,ENST00000518898.2,ENST00000425596.2,ENST00000519783.1,ENST00000274400.5	chr5	70337348:70337451:70338007:70338111:70341270:70341334,	70338008	70338111	70338064	70338064	Frame_Shift_Del	A	-	p.F290fs
LIHC	TCGA-DD-A1EG-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2,ENST00000508157.3	chr5	70791076:70791235:70793096:70793253:70797388:70797480,	70793097	70793253	70793122	70793122	Frame_Shift_Del	A	-	p.K609fs
LIHC	TCGA-DD-A1EG-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2,ENST00000508157.3	chr5	70797388:70797480:70798425:70798618:70800447:70800578,	70798426	70798618	70798434	70798434	Frame_Shift_Del	A	-	p.E686fs
LIHC	TCGA-DD-A1EG-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70806263	70806263	Frame_Shift_Del	A	-	p.Q1115fs
LIHC	TCGA-DD-A1EG-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70806818	70806818	Frame_Shift_Del	T	-	p.V1300fs
LIHC	TCGA-DD-A1EG-01	BDP1	ENST00000525844.1,ENST00000358731.4	chr5	70844508:70844572:70845246:70845433:70848942:70849147,	70845247	70845433	70845286	70845286	Frame_Shift_Del	A	-	p.E2283fs
LIHC	TCGA-DD-A1EG-01	TNPO1	ENST00000337273.5,ENST00000513944.1,ENST00000506351.2,ENST00000509030.1	chr5	72147070:72147146:72151600:72151750:72157634:72157741,	72151601	72151750	72151648	72151648	Frame_Shift_Del	A	-	p.K85fs
LIHC	TCGA-DD-A1EG-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000287761.6	chr5	72251897:72251956:72264324:72264416:72285253:72285328,	72264325	72264416	72264329	72264329	Frame_Shift_Del	A	-	p.E13fs
LIHC	TCGA-DD-A1EG-01	FCHO2	ENST00000508431.1,ENST00000341845.6,ENST00000512348.1,ENST00000430046.2	chr5	72354259:72354351:72359667:72359771:72364476:72364606,	72359668	72359771	72359732	72359732	Frame_Shift_Del	A	-	p.P470fs
LIHC	TCGA-DD-A1EG-01	UTP15	ENST00000508491.1,ENST00000296792.4,ENST00000509005.1,ENST00000543251.1	chr5	72866410:72866536:72868313:72868449:72872776:72872861,	72868314	72868449	72868345	72868345	Frame_Shift_Del	A	-	p.L235fs
LIHC	TCGA-DD-A1EG-01	ARHGEF28	ENST00000426542.2,ENST00000296794.6,ENST00000513042.2,ENST00000296799.4,ENST00000545377.1,ENST00000437974.1,ENST00000510312.2	chr5	73189021:73189113:73190217:73190400:73193786:73193918,	73190218	73190400	73190325	73190325	Frame_Shift_Del	C	-	p.P1256fs
LIHC	TCGA-DD-A1EG-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931192	73931192	Frame_Shift_Del	G	-	p.P373fs
LIHC	TCGA-DD-A1EG-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931192	73931192	Frame_Shift_Del	G	-	p.P373fs
LIHC	TCGA-DD-A1EG-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931409	73931409	Frame_Shift_Del	C	-	p.G302fs
LIHC	TCGA-DD-A1EG-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931409	73931409	Frame_Shift_Del	C	-	p.G302fs
LIHC	TCGA-DD-A1EG-01	HEXB	ENST00000504459.1,ENST00000261416.7,ENST00000511181.1	chr5	74011470:74011515:74012411:74012498:74014115:74014188,	74012412	74012498	74012466	74012466	Frame_Shift_Del	T	-	p.D154fs
LIHC	TCGA-DD-A1EG-01	POLK	ENST00000509126.1,ENST00000515295.1,ENST00000380481.3,ENST00000241436.4,ENST00000511527.1,ENST00000506928.1,ENST00000510815.2,ENST00000514141.1,ENST00000352007.5,ENST00000508526.1,ENST00000505975.1,ENST00000508867.1,ENST00000503479.2,ENST00000504026.1	chr5	74869562:74869694:74872604:74872758:74877033:74877273,	74872605	74872758	74872723	74872723	Frame_Shift_Del	G	-	p.R220fs
LIHC	TCGA-DD-A1EG-01	POLK	ENST00000510815.2,ENST00000503479.2	chr5	74886177:74886265:74889790:74889874:74892046:74893003,	74889791	74889874	74889822	74889822	Frame_Shift_Del	A	-	p.L492fs
LIHC	TCGA-DD-A1EG-01	POLK	ENST00000514141.1	chr5	74886177:74886265:74889702:74889874:74892046:74893003,74882850:74882883:74889702:74889874:74892046:74893003,	74889703	74889874	74889822	74889822	Frame_Shift_Del	A	-	p.L492fs
LIHC	TCGA-DD-A1EG-01	POC5	ENST00000510798.1,ENST00000428202.2,ENST00000503835.1,ENST00000515285.1,ENST00000380475.2,ENST00000446329.2	chr5	74990576:74990656:74998429:74998635:75001528:75001612,	74998430	74998635	74998581	74998581	Frame_Shift_Del	A	-	p.F121fs
LIHC	TCGA-DD-A1EG-01	AGGF1	ENST00000312916.7	chr5	76342171:76342502:76343985:76344097:76344760:76344812,	76343986	76344097	76344060	76344060	Frame_Shift_Del	T	-	p.F426fs
LIHC	TCGA-DD-A1EG-01	AGGF1	ENST00000312916.7	chr5	76344760:76344812:76348530:76348632:76349789:76349955,	76348531	76348632	76348617	76348617	Frame_Shift_Del	A	-	p.G484fs
LIHC	TCGA-DD-A1EG-01	AGGF1	ENST00000312916.7	chr5	76351338:76351421:76355440:76355568:76357527:76357627,	76355441	76355568	76355533	76355533	Frame_Shift_Del	T	-	p.T603fs
LIHC	TCGA-DD-A1EG-01	PDE8B	ENST00000340978.3,ENST00000333194.4,ENST00000505283.1,ENST00000342343.4,ENST00000346042.3,ENST00000264917.5	chr5	76707500:76707546:76707924:76708060:76708935:76709134,	76707925	76708060	76708056	76708056	Frame_Shift_Del	A	-	p.K570fs
LIHC	TCGA-DD-A1EG-01	WDR41	ENST00000511630.2	chr5	76732203:76732219:76734064:76734186:76736637:76736822,	76734065	76734186	76734111	76734111	Frame_Shift_Del	T	-	p.T320fs
LIHC	TCGA-DD-A1EG-01	TBCA	ENST00000306388.6	chr5	76989090:76989177:77004066:77004172:77072028:77072085,	77004067	77004172	77004108	77004108	Frame_Shift_Del	T	-	p.M40fs
LIHC	TCGA-DD-A1EG-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77523967:77524063:77536685:77536760:77563343:77563419,	77536686	77536760	77536741	77536741	Frame_Shift_Del	T	-	p.N75fs
LIHC	TCGA-DD-A1EG-01	SCAMP1	ENST00000538629.1,ENST00000339292.4,ENST00000320280.7,ENST00000508822.1	chr5	77712426:77712473:77714598:77714727:77717624:77717784,	77714599	77714727	77714603	77714603	Frame_Shift_Del	A	-	p.R116fs
LIHC	TCGA-DD-A1EG-01	ARSB	ENST00000565165.1,ENST00000264914.4,ENST00000396151.3	chr5	78135178:78135249:78181406:78181650:78251117:78251325,	78181407	78181650	78181483	78181483	Frame_Shift_Del	T	-	p.T356fs
LIHC	TCGA-DD-A1EG-01	DMGDH	ENST00000380311.4,ENST00000255189.3,ENST00000523732.1,ENST00000518477.1	chr5	78329061:78329231:78338105:78338304:78340126:78340375,	78338106	78338304	78338150	78338150	Frame_Shift_Del	C	-	p.G383fs
LIHC	TCGA-DD-A1EG-01	BHMT2	ENST00000255192.3,ENST00000519743.1	chr5	78375224:78375283:78376509:78376701:78378631:78378779,	78376510	78376701	78376582	78376582	Frame_Shift_Del	G	-	p.G112fs
LIHC	TCGA-DD-A1EG-01	BHMT2	ENST00000521567.1	chr5	78376509:78376701:78378631:78378779:78379014:78379021,78375191:78375283:78378631:78378779:78379014:78379021,	78378632	78378779	78378634	78378634	Frame_Shift_Del	T	-	p.Y151fs
LIHC	TCGA-DD-A1EG-01	BHMT	ENST00000520703.1	chr5	78407631:78407741:78411589:78411722:78415081:78415200,	78411590	78411722	78411600	78411600	Frame_Shift_Del	A	-	p.E15fs
LIHC	TCGA-DD-A1EG-01	ZFYVE16	ENST00000338008.5,ENST00000512558.1,ENST00000505560.1,ENST00000510158.1	chr5	79741081:79741224:79743844:79744223:79745409:79745532,	79743845	79744223	79744013	79744013	Frame_Shift_Del	T	-	p.F965fs
LIHC	TCGA-DD-A1EG-01	CKMT2	ENST00000505060.1,ENST00000513094.1,ENST00000515615.1	chr5	80529157:80529200:80546931:80547103:80548513:80548712,80529143:80529196:80546931:80547103:80548513:80548712,	80546932	80547103	80546982	80546982	Frame_Shift_Del	G	-	p.G11fs
LIHC	TCGA-DD-A1EG-01	ZCCHC9	ENST00000407610.3	chr5	80597459:80597874:80600559:80600960:80604379:80604530,80597442:80597489:80600559:80600960:80604379:80604471,80597480:80597517:80600559:80600960:80604379:80604471,	80600560	80600960	80600949	80600949	Frame_Shift_Del	A	-	p.K125fs
LIHC	TCGA-DD-A1EG-01	ACOT12	ENST00000307624.3	chr5	80631586:80631720:80638490:80638574:80639636:80639700,	80638491	80638574	80638519	80638519	Frame_Shift_Del	C	-	p.G367fs
LIHC	TCGA-DD-A1EG-01	ACOT12	ENST00000307624.3	chr5	80631586:80631720:80638490:80638574:80639636:80639700,	80638491	80638574	80638523	80638523	Frame_Shift_Del	T	-	p.R366fs
LIHC	TCGA-DD-A1EG-01	ACOT12	ENST00000513751.1,ENST00000307624.3	chr5	80659606:80659708:80667568:80667629:80681575:80681645,	80667569	80667629	80667584	80667584	Frame_Shift_Del	G	-	p.F81fs
LIHC	TCGA-DD-A1EG-01	SSBP2	ENST00000507655.1,ENST00000505980.1,ENST00000506960.1,ENST00000504174.1,ENST00000509053.1,ENST00000320672.4,ENST00000512098.1,ENST00000509013.2,ENST00000515395.1,ENST00000514493.1	chr5	80911304:80911376:80932375:80932437:80946085:80946158,	80932376	80932437	80932421	80932421	Frame_Shift_Del	T	-	p.N51fs
LIHC	TCGA-DD-A1EG-01	ATG10	ENST00000458350.3,ENST00000504770.1,ENST00000282185.3,ENST00000513634.1	chr5	81354313:81354421:81460217:81460356:81474308:81474406,	81460218	81460356	81460350	81460350	Frame_Shift_Del	T	-	p.F117fs
LIHC	TCGA-DD-A1EG-01	ATG10	ENST00000508814.1	chr5	81474308:81474406:81548380:81548478:81549132:81549248,81474308:81474406:81548380:81548478:81571963:81572116,	81548381	81548478	81548389	81548389	Frame_Shift_Del	A	-	p.P154fs
LIHC	TCGA-DD-A1EG-01	RPS23	ENST00000507980.1,ENST00000512493.1,ENST00000510019.1,ENST00000510210.1	chr5	81572269:81572337:81573511:81573671:81574138:81574160,	81573512	81573671	81573532	81573532	Frame_Shift_Del	T	-	p.K48fs
LIHC	TCGA-DD-A1EG-01	RPS23	ENST00000507980.1,ENST00000512493.1,ENST00000510019.1,ENST00000510210.1	chr5	81572269:81572337:81573511:81573671:81574138:81574160,	81573512	81573671	81573557	81573557	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-DD-A1EG-01	XRCC4	ENST00000282268.3,ENST00000542685.1,ENST00000338635.6,ENST00000509268.1,ENST00000511817.1,ENST00000396027.4	chr5	82400728:82400877:82406846:82407022:82491588:82491755,	82406847	82407022	82406892	82406892	Frame_Shift_Del	A	-	p.E62fs
LIHC	TCGA-DD-A1EG-01	XRCC4	ENST00000282268.3,ENST00000542685.1,ENST00000338635.6,ENST00000509268.1,ENST00000511817.1,ENST00000396027.4	chr5	82406846:82407022:82491588:82491755:82499370:82499526,	82491589	82491755	82491719	82491719	Frame_Shift_Del	A	-	p.E149fs
LIHC	TCGA-DD-A1EG-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815271	82815271	Frame_Shift_Del	C	-	p.I382fs
LIHC	TCGA-DD-A1EG-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835434	82835434	Frame_Shift_Del	T	-	p.H2204fs
LIHC	TCGA-DD-A1EG-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836542	82836542	Frame_Shift_Del	A	-	p.K2574fs
LIHC	TCGA-DD-A1EG-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86667934:86668012:86669979:86670137:86670656:86670733,	86669980	86670137	86670027	86670027	Frame_Shift_Del	A	-	p.V431fs
LIHC	TCGA-DD-A1EG-01	CCNH	ENST00000508855.1,ENST00000504878.1,ENST00000256897.4,ENST00000504115.1	chr5	86697518:86697589:86700660:86700824:86703792:86703823,	86700661	86700824	86700710	86700710	Frame_Shift_Del	G	-	p.L140fs
LIHC	TCGA-DD-A1EG-01	TMEM161B	ENST00000511087.1	chr5	87498778:87498892:87501617:87501771:87502255:87502316,	87501618	87501771	87501638	87501638	Frame_Shift_Del	T	-	p.I265fs
LIHC	TCGA-DD-A1EG-01	TMEM161B	ENST00000514135.1,ENST00000509387.1,ENST00000512429.1,ENST00000296595.6,ENST00000506536.1,ENST00000511218.1,ENST00000507872.1	chr5	87498778:87498892:87501630:87501771:87502255:87502316,	87501631	87501771	87501638	87501638	Frame_Shift_Del	T	-	p.I265fs
LIHC	TCGA-DD-A1EG-01	TMEM161B	ENST00000510089.1	chr5	87498778:87498892:87501570:87501771:87502255:87502316,	87501571	87501771	87501638	87501638	Frame_Shift_Del	T	-	p.I265fs
LIHC	TCGA-DD-A1EG-01	TMEM161B	ENST00000511087.1	chr5	87498778:87498892:87501617:87501771:87502255:87502316,	87501618	87501771	87501703	87501703	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-DD-A1EG-01	TMEM161B	ENST00000514135.1,ENST00000509387.1,ENST00000512429.1,ENST00000296595.6,ENST00000506536.1,ENST00000511218.1,ENST00000507872.1	chr5	87498778:87498892:87501630:87501771:87502255:87502316,	87501631	87501771	87501703	87501703	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-DD-A1EG-01	TMEM161B	ENST00000510089.1	chr5	87498778:87498892:87501570:87501771:87502255:87502316,	87501571	87501771	87501703	87501703	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-DD-A1EG-01	MEF2C	ENST00000506716.1,ENST00000513252.1,ENST00000424173.2	chr5	88047682:88047860:88056804:88056942:88100414:88100618,	88056805	88056942	88056849	88056849	Frame_Shift_Del	T	-	p.I138fs
LIHC	TCGA-DD-A1EG-01	CETN3	ENST00000283122.3	chr5	89689749:89689924:89695174:89695366:89701501:89701616,	89695175	89695366	89695323	89695323	Frame_Shift_Del	G	-	p.L104fs
LIHC	TCGA-DD-A1EG-01	POLR3G	ENST00000514483.1,ENST00000503973.1,ENST00000399107.1	chr5	89770711:89770837:89781341:89781501:89783816:89783946,	89781342	89781501	89781487	89781487	Frame_Shift_Del	C	-	p.P36fs
LIHC	TCGA-DD-A1EG-01	POLR3G	ENST00000504930.1	chr5	89770711:89770837:89781351:89781501:89783816:89783946,	89781352	89781501	89781487	89781487	Frame_Shift_Del	C	-	p.P36fs
LIHC	TCGA-DD-A1EG-01	POLR3G	ENST00000504930.1,ENST00000503373.1,ENST00000399107.1	chr5	89791493:89791550:89793472:89793523:89797722:89797805,	89793473	89793523	89793511	89793511	Frame_Shift_Del	A	-	p.K115fs
LIHC	TCGA-DD-A1EG-01	POLR3G	ENST00000504930.1,ENST00000503373.1,ENST00000399107.1	chr5	89791493:89791550:89793472:89793523:89797722:89797805,	89793473	89793523	89793517	89793517	Frame_Shift_Del	A	-	p.K118fs
LIHC	TCGA-DD-A1EG-01	ARRDC3	ENST00000508948.1,ENST00000265138.3,ENST00000503192.1	chr5	90671343:90671430:90672437:90672585:90674510:90674592,	90672438	90672585	90672490	90672490	Frame_Shift_Del	T	-	p.K154fs
LIHC	TCGA-DD-A1EG-01	ARRDC3	ENST00000508948.1,ENST00000265138.3,ENST00000503192.1	chr5	90671343:90671430:90672437:90672585:90674510:90674592,	90672438	90672585	90672531	90672531	Frame_Shift_Del	T	-	p.K139fs
LIHC	TCGA-DD-A1EG-01	FAM172A	ENST00000502503.1,ENST00000511139.1,ENST00000509163.1,ENST00000505869.1,ENST00000395965.3,ENST00000509739.1	chr5	93111864:93111949:93120088:93120205:93159853:93159960,	93120089	93120205	93120112	93120112	Frame_Shift_Del	T	-	p.T334fs
LIHC	TCGA-DD-A1EG-01	FAM172A	ENST00000502503.1,ENST00000509163.1,ENST00000510445.1,ENST00000505869.1,ENST00000395965.3,ENST00000509739.1	chr5	93120088:93120205:93159853:93159973:93217175:93217307,	93159854	93159973	93159927	93159927	Frame_Shift_Del	A	-	p.F278fs
LIHC	TCGA-DD-A1EG-01	FAM172A	ENST00000502503.1,ENST00000509739.1	chr5	93300162:93300228:93388830:93388932:93410350:93410425,	93388831	93388932	93388892	93388892	Frame_Shift_Del	T	-	p.K49fs
LIHC	TCGA-DD-A1EG-01	FAM81B	ENST00000507832.1,ENST00000283357.5	chr5	94772503:94772610:94782265:94782401:94783972:94784168,	94782266	94782401	94782312	94782312	Frame_Shift_Del	A	-	p.K315fs
LIHC	TCGA-DD-A1EG-01	TTC37	ENST00000507805.1,ENST00000358746.2	chr5	94852849:94853026:94856419:94856522:94857757:94857790,	94856420	94856522	94856440	94856440	Frame_Shift_Del	T	-	p.K698fs
LIHC	TCGA-DD-A1EG-01	RFESD	ENST00000311364.4,ENST00000458310.1,ENST00000511684.1,ENST00000380005.4	chr5	94989764:94989940:94990036:94990071:94991749:94991894,	94990037	94990071	94990056	94990056	Frame_Shift_Del	T	-	p.H118fs
LIHC	TCGA-DD-A1EG-01	RHOBTB3	ENST00000379982.3	chr5	95087942:95088054:95091099:95091465:95099211:95099246,	95091100	95091465	95091331	95091331	Frame_Shift_Del	T	-	p.L305fs
LIHC	TCGA-DD-A1EG-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234395	95234395	Frame_Shift_Del	T	-	p.K358fs
LIHC	TCGA-DD-A1EG-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234467	95234467	Frame_Shift_Del	T	-	p.K334fs
LIHC	TCGA-DD-A1EG-01	CAST	ENST00000338252.3,ENST00000325674.7,ENST00000511097.2,ENST00000348386.3,ENST00000515063.1,ENST00000509903.1	chr5	96076448:96076487:96076969:96077062:96077197:96077284,96075741:96075822:96076969:96077062:96077197:96077284,	96076970	96077062	96077024	96077024	Frame_Shift_Del	G	-	p.G325fs
LIHC	TCGA-DD-A1EG-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000338252.3,ENST00000325674.7,ENST00000508608.1,ENST00000510156.1,ENST00000348386.3,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000508579.1,ENST00000395813.1,ENST00000437034.2,ENST00000510500.1,ENST00000395812.2,ENST00000484552.1,ENST00000511049.1,ENST00000515663.1,ENST00000510756.1,ENST00000509903.1	chr5	96090364:96090445:96093147:96093198:96093286:96093358,	96093148	96093198	96093174	96093174	Frame_Shift_Del	A	-	p.P579fs
LIHC	TCGA-DD-A1EG-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000338252.3,ENST00000325674.7,ENST00000508608.1,ENST00000510156.1,ENST00000348386.3,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000510098.1,ENST00000508579.1,ENST00000395813.1,ENST00000437034.2,ENST00000395812.2,ENST00000515663.1,ENST00000510756.1,ENST00000509903.1	chr5	96093289:96093358:96097977:96098076:96100927:96101029,96093289:96093358:96097977:96098076:96100924:96101029,	96097978	96098076	96098030	96098030	Frame_Shift_Del	C	-	p.T629fs
LIHC	TCGA-DD-A1EG-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96232106:96232208:96232435:96232567:96235824:96235893,	96232436	96232567	96232510	96232510	Frame_Shift_Del	A	-	p.L482fs
LIHC	TCGA-DD-A1EG-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96314964	96314964	Frame_Shift_Del	C	-	p.P48fs
LIHC	TCGA-DD-A1EG-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315508	96315508	Frame_Shift_Del	A	-	p.E229fs
LIHC	TCGA-DD-A1EG-01	CHD1	ENST00000284049.3,ENST00000511628.1	chr5	98217678:98217827:98218791:98218941:98221281:98221353,	98218792	98218941	98218935	98218935	Frame_Shift_Del	A	-	p.C859fs
LIHC	TCGA-DD-A1EG-01	CHD1	ENST00000284049.3	chr5	98236514:98236786:98236889:98237039:98238603:98238668,	98236890	98237039	98236901	98236901	Frame_Shift_Del	T	-	p.K192fs
LIHC	TCGA-DD-A1EG-01	CHD1	ENST00000284049.3	chr5	98239495:98239612:98240600:98240802:98262037:98262240,	98240601	98240802	98240641	98240641	Frame_Shift_Del	T	-	p.N72fs
LIHC	TCGA-DD-A1EG-01	ST8SIA4	ENST00000231461.5	chr5	100142638:100147833:100191806:100192100:100222046:100222304,	100191807	100192100	100191974	100191974	Frame_Shift_Del	T	-	p.K210fs
LIHC	TCGA-DD-A1EG-01	ST8SIA4	ENST00000231461.5	chr5	100142638:100147833:100191806:100192100:100222046:100222304,	100191807	100192100	100192059	100192059	Frame_Shift_Del	C	-	p.G182fs
LIHC	TCGA-DD-A1EG-01	SLCO6A1	ENST00000379807.3,ENST00000514551.1,ENST00000389019.3,ENST00000506729.1	chr5	101755626:101755725:101774320:101774465:101794085:101794195,	101774321	101774465	101774380	101774380	Frame_Shift_Del	A	-	p.L406fs
LIHC	TCGA-DD-A1EG-01	SLCO6A1	ENST00000379807.3,ENST00000514551.1,ENST00000389019.3,ENST00000506729.1	chr5	101755626:101755725:101774320:101774465:101794085:101794195,	101774321	101774465	101774421	101774421	Frame_Shift_Del	T	-	p.K392fs
LIHC	TCGA-DD-A1EG-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1	chr5	102491612:102491698:102493891:102494017:102494155:102494277,	102493892	102494017	102493914	102493914	Frame_Shift_Del	T	-	p.S504fs
LIHC	TCGA-DD-A1EG-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1	chr5	102491612:102491698:102493891:102494017:102494155:102494277,	102493892	102494017	102493934	102493934	Frame_Shift_Del	G	-	p.W511fs
LIHC	TCGA-DD-A1EG-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1	chr5	102502882:102503024:102503775:102503999:102508858:102508986,	102503776	102503999	102503797	102503797	Frame_Shift_Del	A	-	p.E695fs
LIHC	TCGA-DD-A1EG-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1,ENST00000507966.3	chr5	102515721:102515889:102518934:102519108:102520372:102520445,	102518935	102519108	102518966	102518966	Frame_Shift_Del	A	-	p.E985fs
LIHC	TCGA-DD-A1EG-01	PPIP5K2	ENST00000321521.9,ENST00000414217.1	chr5	102520372:102520445:102522020:102522140:102523014:102523077,102520372:102520445:102522020:102522140:102526542:102526683,	102522021	102522140	102522064	102522064	Frame_Shift_Del	T	-	p.G1071fs
LIHC	TCGA-DD-A1EG-01	FBXL17	ENST00000359660.5,ENST00000481160.1,ENST00000542267.1,ENST00000496714.1	chr5	107559821:107559929:107684099:107684231:107700438:107700468,	107684100	107684231	107684107	107684107	Frame_Shift_Del	T	-	p.N500fs
LIHC	TCGA-DD-A1EG-01	PJA2	ENST00000361189.2,ENST00000361557.3	chr5	108670413:108673057:108679890:108680012:108680405:108680520,	108679891	108680012	108679928	108679928	Frame_Shift_Del	A	-	p.F656fs
LIHC	TCGA-DD-A1EG-01	MAN2A1	ENST00000261483.4	chr5	109103235:109103409:109106055:109106242:109110488:109110666,	109106056	109106242	109106139	109106139	Frame_Shift_Del	A	-	p.K365fs
LIHC	TCGA-DD-A1EG-01	EPB41L4A	ENST00000261486.5	chr5	111545588:111545679:111570330:111570452:111575356:111575434,	111570331	111570452	111570360	111570360	Frame_Shift_Del	G	-	p.P353fs
LIHC	TCGA-DD-A1EG-01	DCP2	ENST00000513585.1,ENST00000389063.2,ENST00000543319.1	chr5	112343634:112343739:112346452:112346504:112349017:112349546,	112346453	112346504	112346499	112346499	Frame_Shift_Del	A	-	p.E365fs
LIHC	TCGA-DD-A1EG-01	MCC	ENST00000302475.4,ENST00000408903.3,ENST00000515367.2	chr5	112379226:112379327:112384789:112384996:112389421:112389656,	112384790	112384996	112384972	112384972	Frame_Shift_Del	G	-	p.Q635fs
LIHC	TCGA-DD-A1EG-01	YTHDC2	ENST00000515883.1,ENST00000161863.4,ENST00000503857.1	chr5	112870001:112870104:112871338:112871495:112874770:112874878,	112871339	112871495	112871410	112871410	Frame_Shift_Del	C	-	p.H339fs
LIHC	TCGA-DD-A1EG-01	YTHDC2	ENST00000161863.4	chr5	112927692:112927875:112928999:112929087:112929178:112929247,	112929000	112929087	112929061	112929061	Frame_Shift_Del	A	-	p.E1425fs
LIHC	TCGA-DD-A1EG-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114606944	114606944	Frame_Shift_Del	T	-	p.N433fs
LIHC	TCGA-DD-A1EG-01	CCDC112	ENST00000379611.5,ENST00000506442.1,ENST00000395557.4	chr5	114612661:114612751:114615343:114615465:114620483:114620605,	114615344	114615465	114615416	114615416	Frame_Shift_Del	T	-	p.S97fs
LIHC	TCGA-DD-A1EG-01	ATG12	ENST00000379594.3,ENST00000274459.4,ENST00000513167.1,ENST00000513322.1,ENST00000509598.1,ENST00000509910.1,ENST00000511984.1,ENST00000505993.1	chr5	115167416:115167560:115168298:115168361:115173324:115173461,	115168299	115168361	115168355	115168355	Frame_Shift_Del	A	-	p.Y103fs
LIHC	TCGA-DD-A1EG-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202441	115202441	Frame_Shift_Del	T	-	p.N48fs
LIHC	TCGA-DD-A1EG-01	SEMA6A	ENST00000343348.6,ENST00000510263.1,ENST00000506114.1	chr5	115783383:115783507:115803278:115803443:115808768:115808789,	115803279	115803443	115803385	115803385	Frame_Shift_Del	C	-	p.G596fs
LIHC	TCGA-DD-A1EG-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000503802.1,ENST00000510924.1	chr5	118433673:118433799:118437629:118437701:118440874:118440953,	118437630	118437701	118437661	118437661	Frame_Shift_Del	T	-	p.I82fs
LIHC	TCGA-DD-A1EG-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000503802.1	chr5	118451852:118452031:118454509:118454699:118456665:118456834,	118454510	118454699	118454577	118454577	Frame_Shift_Del	T	-	p.F271fs
LIHC	TCGA-DD-A1EG-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118500201:118500371:118500877:118500975:118502310:118502476,	118500878	118500975	118500927	118500927	Frame_Shift_Del	T	-	p.I1641fs
LIHC	TCGA-DD-A1EG-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118505915	118505915	Frame_Shift_Del	T	-	p.V1810fs
LIHC	TCGA-DD-A1EG-01	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121761046:121761226:121767663:121767777,121758562:121759434:121761046:121761226:121767663:121767777,	121761047	121761226	121761074	121761074	Frame_Shift_Del	A	-	p.K391fs
LIHC	TCGA-DD-A1EG-01	SNX2	ENST00000505854.1	chr5	122110789:122110906:122130960:122131078:122135386:122135550,	122130961	122131078	122131033	122131033	Frame_Shift_Del	C	-	p.P61fs
LIHC	TCGA-DD-A1EG-01	SNX2	ENST00000510372.1,ENST00000514949.1,ENST00000379516.2	chr5	122161744:122161888:122163073:122163154:122163269:122163341,	122163074	122163154	122163095	122163095	Frame_Shift_Del	G	-	p.G460fs
LIHC	TCGA-DD-A1EG-01	SNX2	ENST00000510372.1,ENST00000514949.1,ENST00000379516.2	chr5	122161744:122161888:122163073:122163154:122163269:122163341,	122163074	122163154	122163122	122163122	Frame_Shift_Del	A	-	p.K469fs
LIHC	TCGA-DD-A1EG-01	SNX24	ENST00000395451.4	chr5	122181357:122181388:122226721:122226820:122272428:122272512,	122226722	122226820	122226754	122226754	Frame_Shift_Del	A	-	p.T31fs
LIHC	TCGA-DD-A1EG-01	PRDM6	ENST00000434521.1	chr5	122435440:122435656:122506459:122506802:122515840:122515979,	122506460	122506802	122506721	122506721	Frame_Shift_Del	T	-	p.L472fs
LIHC	TCGA-DD-A1EG-01	ZNF608	ENST00000505686.1	chr5	123979203:123979376:123979936:123980354:123985302:123985390,	123979937	123980354	123980122	123980122	Frame_Shift_Del	T	-	p.N1313fs
LIHC	TCGA-DD-A1EG-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123983058	123983058	Frame_Shift_Del	T	-	p.S1007fs
LIHC	TCGA-DD-A1EG-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123983368	123983368	Frame_Shift_Del	C	-	p.R903fs
LIHC	TCGA-DD-A1EG-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123983845	123983845	Frame_Shift_Del	G	-	p.P744fs
LIHC	TCGA-DD-A1EG-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984684	123984684	Frame_Shift_Del	C	-	p.A465fs
LIHC	TCGA-DD-A1EG-01	ZNF608	ENST00000503896.2,ENST00000505686.1,ENST00000513986.1,ENST00000306315.5,ENST00000509799.1	chr5	123985302:123985390:124036706:124036962:124079776:124080060,	124036707	124036962	124036953	124036953	Frame_Shift_Del	G	-	p.L306fs
LIHC	TCGA-DD-A1EG-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124080352	124080352	Frame_Shift_Del	T	-	p.T111fs
LIHC	TCGA-DD-A1EG-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124080428	124080428	Frame_Shift_Del	A	-	p.F85fs
LIHC	TCGA-DD-A1EG-01	LMNB1	ENST00000504788.1,ENST00000261366.5,ENST00000460265.1	chr5	126158472:126158577:126161679:126161799:126168385:126168493,	126161680	126161799	126161782	126161782	Frame_Shift_Del	A	-	p.K532fs
LIHC	TCGA-DD-A1EG-01	LMNB1	ENST00000504788.1,ENST00000261366.5,ENST00000460265.1	chr5	126161679:126161799:126168385:126168493:126171914:126172263,	126168386	126168493	126168447	126168447	Frame_Shift_Del	A	-	p.E559fs
LIHC	TCGA-DD-A1EG-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126859151:126859274:126860222:126860612:126862309:126862470,	126860223	126860612	126860236	126860236	Frame_Shift_Del	T	-	p.S39fs
LIHC	TCGA-DD-A1EG-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610311	127610311	Frame_Shift_Del	C	-	p.G2553fs
LIHC	TCGA-DD-A1EG-01	SLC27A6	ENST00000262462.4,ENST00000506176.1,ENST00000395266.1	chr5	128301670:128302311:128320825:128321029:128324292:128324451,	128320826	128321029	128320883	128320883	Frame_Shift_Del	G	-	p.W180fs
LIHC	TCGA-DD-A1EG-01	SLC27A6	ENST00000262462.4,ENST00000506176.1,ENST00000395266.1	chr5	128301670:128302311:128320825:128321029:128324292:128324451,	128320826	128321029	128321009	128321009	Frame_Shift_Del	T	-	p.I222fs
LIHC	TCGA-DD-A1EG-01	FNIP1	ENST00000511848.1,ENST00000510461.1,ENST00000307968.7	chr5	131055009:131055110:131066596:131066731:131080256:131080383,	131066597	131066731	131066699	131066699	Frame_Shift_Del	A	-	p.F84fs
LIHC	TCGA-DD-A1EG-01	ACSL6	ENST00000379255.1,ENST00000379249.3,ENST00000379244.1,ENST00000296869.4,ENST00000431707.1,ENST00000413683.1,ENST00000379272.2,ENST00000543479.1,ENST00000493861.1,ENST00000544770.1,ENST00000379264.2,ENST00000357096.1,ENST00000379246.1,ENST00000379240.1	chr5	131296212:131296314:131298227:131298371:131302108:131302225,	131298228	131298371	131298275	131298275	Frame_Shift_Del	G	-	p.R604fs
LIHC	TCGA-DD-A1EG-01	PDLIM4	ENST00000253754.3,ENST00000379018.3,ENST00000418373.1	chr5	131602156:131602238:131606607:131606786:131606995:131607029,	131606608	131606786	131606750	131606750	Frame_Shift_Del	C	-	p.A157fs
LIHC	TCGA-DD-A1EG-01	SLC22A5	ENST00000475308.1,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1,ENST00000447841.1	chr5	131728124:131728307:131729367:131729503:131729876:131729964,	131729368	131729503	131729439	131729439	Frame_Shift_Del	T	-	p.F508fs
LIHC	TCGA-DD-A1EG-01	RAD50	ENST00000265335.6,ENST00000378823.3,ENST00000533482.1	chr5	131925322:131925529:131926915:131927098:131927568:131927726,	131926916	131927098	131926940	131926940	Frame_Shift_Del	A	-	p.K354fs
LIHC	TCGA-DD-A1EG-01	RAD50	ENST00000265335.6,ENST00000378823.3,ENST00000533482.1	chr5	131926968:131927098:131927568:131927726:131928455:131929219,131926915:131927098:131927568:131927726:131930560:131930736,	131927569	131927726	131927650	131927650	Frame_Shift_Del	A	-	p.K435fs
LIHC	TCGA-DD-A1EG-01	SHROOM1	ENST00000378676.1	chr5	132159314:132159456:132159541:132160111:132160306:132160308,132159314:132159456:132159541:132160111:132160709:132160765,	132159542	132160111	132159877	132159877	Frame_Shift_Del	G	-	p.P492fs
LIHC	TCGA-DD-A1EG-01	SHROOM1	ENST00000378679.3,ENST00000319854.3	chr5	132159972:132160111:132160306:132160513:132160709:132160765,	132160307	132160513	132160464	132160464	Frame_Shift_Del	G	-	p.Q362fs
LIHC	TCGA-DD-A1EG-01	AFF4	ENST00000265343.5	chr5	132220767:132220811:132222001:132222095:132223212:132223284,	132222002	132222095	132222042	132222042	Frame_Shift_Del	T	-	p.N1020fs
LIHC	TCGA-DD-A1EG-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132227855:132228096:132228721:132228810:132232014:132232932,	132228722	132228810	132228768	132228768	Frame_Shift_Del	T	-	p.T784fs
LIHC	TCGA-DD-A1EG-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232045	132232045	Frame_Shift_Del	T	-	p.K759fs
LIHC	TCGA-DD-A1EG-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232104	132232104	Frame_Shift_Del	C	-	p.E740fs
LIHC	TCGA-DD-A1EG-01	HSPA4	ENST00000304858.2	chr5	132403108:132403249:132406065:132406188:132408921:132409021,	132406066	132406188	132406092	132406092	Frame_Shift_Del	T	-	p.N111fs
LIHC	TCGA-DD-A1EG-01	FSTL4	ENST00000509525.1,ENST00000265342.7	chr5	132537624:132537734:132545882:132545990:132552920:132553070,	132545883	132545990	132545912	132545912	Frame_Shift_Del	C	-	p.D563fs
LIHC	TCGA-DD-A1EG-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316639	133316639	Frame_Shift_Del	T	-	p.N111fs
LIHC	TCGA-DD-A1EG-01	VDAC1	ENST00000466080.1,ENST00000395047.2,ENST00000395044.3,ENST00000265333.3,ENST00000425992.1	chr5	133326692:133326845:133327996:133328046:133328636:133328706,	133327997	133328046	133328012	133328012	Frame_Shift_Del	T	-	p.K34fs
LIHC	TCGA-DD-A1EG-01	CDKL3	ENST00000435240.2,ENST00000520592.1,ENST00000520693.1	chr5	133643828:133644157:133644264:133644418:133647982:133648071,133643828:133644157:133644264:133644418:133657481:133657594,133643828:133644157:133644264:133644418:133655048:133655080,	133644265	133644418	133644309	133644309	Frame_Shift_Del	T	-	p.T331fs
LIHC	TCGA-DD-A1EG-01	UBE2B	ENST00000265339.2,ENST00000506787.1	chr5	133712364:133712385:133716409:133716499:133724015:133724104,	133716410	133716499	133716460	133716460	Frame_Shift_Del	C	-	p.P68fs
LIHC	TCGA-DD-A1EG-01	UBE2B	ENST00000265339.2,ENST00000506787.1	chr5	133712364:133712385:133716409:133716499:133724015:133724104,	133716410	133716499	133716472	133716472	Frame_Shift_Del	T	-	p.F72fs
LIHC	TCGA-DD-A1EG-01	H2AFY	ENST00000504197.1,ENST00000508120.1,ENST00000508785.1,ENST00000507868.1,ENST00000304332.4	chr5	134696208:134696294:134705095:134705293:134705725:134705832,	134705096	134705293	134705217	134705217	Frame_Shift_Del	C	-	p.G119fs
LIHC	TCGA-DD-A1EG-01	H2AFY	ENST00000508785.1,ENST00000507868.1,ENST00000360597.4,ENST00000506671.1,ENST00000312469.4	chr5	134705725:134705832:134724611:134724816:134734751:134734867,	134724612	134724816	134724651	134724651	Frame_Shift_Del	C	-	p.A45fs
LIHC	TCGA-DD-A1EG-01	H2AFY	ENST00000506218.1	chr5	134705725:134705832:134724611:134724986:134734751:134734867,	134724612	134724986	134724651	134724651	Frame_Shift_Del	C	-	p.A45fs
LIHC	TCGA-DD-A1EG-01	SLC25A48	ENST00000420621.1,ENST00000433282.2	chr5	135188251:135188510:135207149:135207407:135209709:135209843,	135207150	135207407	135207319	135207319	Frame_Shift_Del	C	-	p.I197fs
LIHC	TCGA-DD-A1EG-01	SLC25A48	ENST00000420621.1,ENST00000433282.2	chr5	135188251:135188510:135207149:135207407:135209709:135209843,	135207150	135207407	135207373	135207373	Frame_Shift_Del	C	-	p.S215fs
LIHC	TCGA-DD-A1EG-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000305126.8,ENST00000442011.2	chr5	135369451:135369550:135379746:135379811:135382023:135382129,	135379747	135379811	135379790	135379790	Frame_Shift_Del	G	-	p.G93fs
LIHC	TCGA-DD-A1EG-01	SPOCK1	ENST00000510689.1,ENST00000394945.1,ENST00000282223.7	chr5	136328242:136328289:136403403:136403518:136448123:136448250,	136403404	136403518	136403442	136403442	Frame_Shift_Del	G	-	p.P184fs
LIHC	TCGA-DD-A1EG-01	MYOT	ENST00000515645.1	chr5	137206129:137206214:137206565:137206696:137211517:137211692,	137206566	137206696	137206676	137206676	Frame_Shift_Del	C	-	p.I112fs
LIHC	TCGA-DD-A1EG-01	MYOT	ENST00000239926.4,ENST00000515645.1,ENST00000421631.2	chr5	137219072:137219280:137221736:137221902:137222552:137222686,	137221737	137221902	137221859	137221859	Frame_Shift_Del	A	-	p.K383fs
LIHC	TCGA-DD-A1EG-01	FAM13B	ENST00000425075.2,ENST00000420893.2	chr5	137278883:137278905:137281590:137281686:137284643:137284783,	137281591	137281686	137281671	137281671	Frame_Shift_Del	T	-	p.R732fs
LIHC	TCGA-DD-A1EG-01	FAM13B	ENST00000425075.2,ENST00000033079.3,ENST00000420893.2	chr5	137320945:137321078:137323149:137323305:137323962:137324004,	137323150	137323305	137323260	137323260	Frame_Shift_Del	A	-	p.F312fs
LIHC	TCGA-DD-A1EG-01	KIF20A	ENST00000394894.3,ENST00000504621.1,ENST00000508792.1	chr5	137517297:137517417:137518011:137518150:137518274:137518436,	137518012	137518150	137518132	137518132	Frame_Shift_Del	A	-	p.K166fs
LIHC	TCGA-DD-A1EG-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137728859:137729061:137733866:137734081:137735548:137735588,	137733867	137734081	137733886	137733886	Frame_Shift_Del	G	-	p.G951fs
LIHC	TCGA-DD-A1EG-01	HSPA9	ENST00000297185.3,ENST00000507097.1	chr5	137894241:137894346:137895552:137895780:137897268:137897478,	137895553	137895780	137895754	137895754	Frame_Shift_Del	A	-	p.F403fs
LIHC	TCGA-DD-A1EG-01	CTNNA1	ENST00000517980.1,ENST00000523912.1,ENST00000518825.1,ENST00000520158.1,ENST00000519113.1,ENST00000522227.1,ENST00000302763.7	chr5	138117611:138117718:138118865:138119061:138145726:138145778,	138118866	138119061	138118973	138118973	Frame_Shift_Del	T	-	p.N71fs
LIHC	TCGA-DD-A1EG-01	CTNNA1	ENST00000517980.1,ENST00000523912.1,ENST00000518825.1,ENST00000520158.1,ENST00000519113.1,ENST00000522227.1,ENST00000302763.7	chr5	138117611:138117718:138118865:138119061:138145726:138145778,	138118866	138119061	138119054	138119054	Frame_Shift_Del	A	-	p.R98fs
LIHC	TCGA-DD-A1EG-01	CTNNA1	ENST00000518585.1,ENST00000518825.1,ENST00000520158.1,ENST00000519309.1,ENST00000355078.5,ENST00000521724.1,ENST00000518910.1,ENST00000302763.7	chr5	138145726:138145893:138147871:138147991:138160218:138160277,	138147872	138147991	138147943	138147943	Frame_Shift_Del	A	-	p.L180fs
LIHC	TCGA-DD-A1EG-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643643	138643643	Frame_Shift_Del	A	-	p.E180fs
LIHC	TCGA-DD-A1EG-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643643	138643643	Frame_Shift_Del	A	-	p.E180fs
LIHC	TCGA-DD-A1EG-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138644011	138644011	Frame_Shift_Del	A	-	p.N303fs
LIHC	TCGA-DD-A1EG-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138644011	138644011	Frame_Shift_Del	A	-	p.N303fs
LIHC	TCGA-DD-A1EG-01	MZB1	ENST00000503351.1,ENST00000417694.2,ENST00000503481.1,ENST00000302125.8,ENST00000503120.1	chr5	138723473:138723610:138723709:138723820:138724149:138724274,	138723710	138723820	138723776	138723776	Frame_Shift_Del	G	-	p.P116fs
LIHC	TCGA-DD-A1EG-01	DNAJC18	ENST00000515277.1,ENST00000302060.5,ENST00000515581.1	chr5	138764226:138764372:138773060:138773247:138775094:138775148,	138773061	138773247	138773102	138773102	Frame_Shift_Del	C	-	p.G62fs
LIHC	TCGA-DD-A1EG-01	TMEM173	ENST00000510817.1,ENST00000512606.1,ENST00000330794.4	chr5	138860374:138860483:138860743:138860927:138861794:138861881,138860374:138860483:138860743:138860927:138861062:138861135,	138860744	138860927	138860890	138860890	Frame_Shift_Del	G	-	p.L89fs
LIHC	TCGA-DD-A1EG-01	TMEM173	ENST00000514119.1,ENST00000511850.1	chr5	138860374:138860483:138860743:138861289:138861794:138861881,	138860744	138861289	138860890	138860890	Frame_Shift_Del	G	-	p.L89fs
LIHC	TCGA-DD-A1EG-01	TMEM173	ENST00000510817.1,ENST00000515507.1,ENST00000330794.4	chr5	138860770:138860927:138861062:138861289:138861794:138861881,	138861063	138861289	138861185	138861185	Frame_Shift_Del	C	-	p.G35fs
LIHC	TCGA-DD-A1EG-01	TMEM173	ENST00000514119.1,ENST00000511850.1	chr5	138860374:138860483:138860743:138861289:138861794:138861881,	138860744	138861289	138861185	138861185	Frame_Shift_Del	C	-	p.G35fs
LIHC	TCGA-DD-A1EG-01	UBE2D2	ENST00000505548.1,ENST00000505007.1,ENST00000511691.1,ENST00000398733.3,ENST00000253815.2,ENST00000511725.1,ENST00000398734.4	chr5	138979988:138980020:138994170:138994202:138994281:138994359,	138994171	138994202	138994190	138994190	Frame_Shift_Del	A	-	p.T7fs
LIHC	TCGA-DD-A1EG-01	UBE2D2	ENST00000505548.1,ENST00000505007.1,ENST00000511691.1,ENST00000398733.3,ENST00000253815.2,ENST00000511725.1,ENST00000398734.4	chr5	138994170:138994202:138994281:138994359:138994445:138994551,	138994282	138994359	138994309	138994309	Frame_Shift_Del	T	-	p.F22fs
LIHC	TCGA-DD-A1EG-01	HBEGF	ENST00000507104.1	chr5	139722219:139722397:139725495:139725669:139725867:139726188,	139725496	139725669	139725559	139725559	Frame_Shift_Del	G	-	p.L53fs
LIHC	TCGA-DD-A1EG-01	ANKHD1	ENST00000360839.2,ENST00000297183.6,ENST00000421134.1	chr5	139866542:139866645:139876104:139876863:139884405:139884551,	139876105	139876863	139876634	139876634	Frame_Shift_Del	C	-	p.V925fs
LIHC	TCGA-DD-A1EG-01	ANKHD1	ENST00000435794.1,ENST00000360839.2,ENST00000297183.6	chr5	139907768:139909381:139914946:139915123:139916973:139917174,	139914947	139915123	139915034	139915034	Frame_Shift_Del	T	-	p.V2313fs
LIHC	TCGA-DD-A1EG-01	APBB3	ENST00000507279.1,ENST00000356738.2,ENST00000354402.5,ENST00000511201.2,ENST00000412920.3,ENST00000358580.5,ENST00000506958.1,ENST00000357560.4,ENST00000506289.1,ENST00000513507.1,ENST00000509914.1,ENST00000510241.1,ENST00000467078.1,ENST00000505617.1	chr5	139942247:139942308:139943178:139943255:139943336:139943500,	139943179	139943255	139943223	139943223	Frame_Shift_Del	G	-	p.P82fs
LIHC	TCGA-DD-A1EG-01	HDAC3	ENST00000459727.1	chr5	141004774:141004932:141005251:141005331:141005579:141005637,141004774:141004932:141005251:141005331:141005760:141005850,	141005252	141005331	141005310	141005310	Frame_Shift_Del	G	-	p.P334fs
LIHC	TCGA-DD-A1EG-01	HDAC3	ENST00000519474.1,ENST00000523088.1,ENST00000305264.3,ENST00000469550.2	chr5	141008171:141008206:141008739:141008873:141009250:141009306,	141008740	141008873	141008808	141008808	Frame_Shift_Del	A	-	p.F181fs
LIHC	TCGA-DD-A1EG-01	RNF14	ENST00000394515.3	chr5	141353147:141353307:141354368:141354520:141357867:141357959,141353147:141353307:141354368:141354520:141359687:141359842,	141354369	141354520	141354504	141354504	Frame_Shift_Del	G	-	p.W97fs
LIHC	TCGA-DD-A1EG-01	GNPDA1	ENST00000500692.2,ENST00000510194.1,ENST00000503794.1,ENST00000507107.1,ENST00000504139.1,ENST00000513454.1,ENST00000508177.1,ENST00000311337.6,ENST00000503229.1	chr5	141385708:141385891:141387363:141387465:141391476:141391606,	141387364	141387465	141387417	141387417	Frame_Shift_Del	T	-	p.N58fs
LIHC	TCGA-DD-A1EG-01	NDFIP1	ENST00000253814.4	chr5	141511776:141511907:141515294:141515382:141517298:141517423,	141515295	141515382	141515362	141515362	Frame_Shift_Del	T	-	p.I117fs
LIHC	TCGA-DD-A1EG-01	ARHGAP26	ENST00000274498.4,ENST00000475287.1,ENST00000378004.3,ENST00000378013.2	chr5	142258938:142259010:142264862:142264964:142273802:142273900,	142264863	142264964	142264915	142264915	Frame_Shift_Del	A	-	p.E146fs
LIHC	TCGA-DD-A1EG-01	NR3C1	ENST00000503201.1	chr5	142693566:142693733:142779220:142780417:142783940:142784035,	142779221	142780417	142779338	142779338	Frame_Shift_Del	G	-	p.P356fs
LIHC	TCGA-DD-A1EG-01	PRELID2	ENST00000511435.1,ENST00000334744.4,ENST00000358004.2,ENST00000505416.1,ENST00000515475.1	chr5	145199507:145199581:145202639:145202697:145214739:145214796,	145202640	145202697	145202643	145202643	Frame_Shift_Del	T	-	p.R44fs
LIHC	TCGA-DD-A1EG-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145383620:145383716:145393309:145393624:145427334:145427426,	145393310	145393624	145393492	145393492	Frame_Shift_Del	C	-	p.N309fs
LIHC	TCGA-DD-A1EG-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145427334:145427426:145428637:145428808:145435543:145435641,	145428638	145428808	145428797	145428797	Frame_Shift_Del	C	-	p.I437fs
LIHC	TCGA-DD-A1EG-01	SH3RF2	ENST00000511705.1	chr5	145435543:145435776:145439428:145439787:145441988:145442297,145435543:145435794:145439428:145439787:145441988:145442297,	145439429	145439787	145439647	145439647	Frame_Shift_Del	T	-	p.W592fs
LIHC	TCGA-DD-A1EG-01	DPYSL3	ENST00000343218.5	chr5	146798045:146798194:146804437:146804526:146833111:146833214,146798045:146798194:146804437:146804526:146889040:146889098,	146804438	146804526	146804504	146804504	Frame_Shift_Del	C	-	p.G136fs
LIHC	TCGA-DD-A1EG-01	JAKMIP2	ENST00000265272.5,ENST00000504845.1,ENST00000333010.6	chr5	147012242:147012341:147015784:147015847:147016527:147016611,	147015785	147015847	147015816	147015816	Frame_Shift_Del	A	-	p.F549fs
LIHC	TCGA-DD-A1EG-01	ABLIM3	ENST00000504238.1,ENST00000356541.3,ENST00000515171.1	chr5	148612815:148612863:148619321:148619451:148624443:148624578,	148619322	148619451	148619410	148619410	Frame_Shift_Del	C	-	p.S388fs
LIHC	TCGA-DD-A1EG-01	ABLIM3	ENST00000326685.7,ENST00000508983.1	chr5	148620238:148620337:148622053:148622101:148624443:148624578,148619321:148619451:148622053:148622101:148624443:148624578,	148622054	148622101	148622092	148622092	Frame_Shift_Del	A	-	p.K448fs
LIHC	TCGA-DD-A1EG-01	AFAP1L1	ENST00000515000.1,ENST00000455574.2,ENST00000296721.4,ENST00000522492.1	chr5	148679833:148679917:148680695:148680793:148681980:148682089,	148680696	148680793	148680737	148680737	Frame_Shift_Del	G	-	p.G91fs
LIHC	TCGA-DD-A1EG-01	HMGXB3	ENST00000502717.1,ENST00000503427.1	chr5	149416198:149416500:149416962:149417090:149420310:149420386,	149416963	149417090	149417047	149417047	Frame_Shift_Del	C	-	p.N758fs
LIHC	TCGA-DD-A1EG-01	CSF1R	ENST00000504875.1,ENST00000286301.3	chr5	149450102:149450134:149452863:149453056:149456838:149456998,	149452864	149453056	149452997	149452997	Frame_Shift_Del	C	-	p.E317fs
LIHC	TCGA-DD-A1EG-01	SLC6A7	ENST00000230671.2,ENST00000524041.1	chr5	149582141:149582266:149583229:149583342:149583469:149583601,	149583230	149583342	149583298	149583298	Frame_Shift_Del	T	-	p.F386fs
LIHC	TCGA-DD-A1EG-01	CAMK2A	ENST00000398376.3,ENST00000348628.6,ENST00000508662.1	chr5	149629788:149629872:149630250:149630373:149631312:149631407,	149630251	149630373	149630342	149630342	Frame_Shift_Del	G	-	p.P242fs
LIHC	TCGA-DD-A1EG-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000514442.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149754516:149754726:149754901:149755117:149755283:149755472,	149754902	149755117	149754922	149754922	Frame_Shift_Del	C	-	p.S503fs
LIHC	TCGA-DD-A1EG-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000514442.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149754516:149754726:149754901:149755117:149755283:149755472,	149754902	149755117	149755027	149755027	Frame_Shift_Del	G	-	p.V538fs
LIHC	TCGA-DD-A1EG-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000514442.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149754516:149754726:149754901:149755117:149755283:149755472,	149754902	149755117	149755107	149755107	Frame_Shift_Del	C	-	p.A565fs
LIHC	TCGA-DD-A1EG-01	TCOF1	ENST00000506630.1	chr5	149769509:149769586:149771106:149771739:149772267:149772353,	149771107	149771739	149771556	149771556	Frame_Shift_Del	C	-	p.P1149fs
LIHC	TCGA-DD-A1EG-01	TCOF1	ENST00000513346.1,ENST00000439160.2	chr5	149769509:149769586:149771519:149771739:149772267:149772353,	149771520	149771739	149771556	149771556	Frame_Shift_Del	C	-	p.P1149fs
LIHC	TCGA-DD-A1EG-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028531	150028531	Frame_Shift_Del	C	-	p.P477fs
LIHC	TCGA-DD-A1EG-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150029494	150029494	Frame_Shift_Del	G	-	p.G797fs
LIHC	TCGA-DD-A1EG-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150029819	150029819	Frame_Shift_Del	C	-	p.A905fs
LIHC	TCGA-DD-A1EG-01	GPX3	ENST00000388825.4,ENST00000517973.1	chr5	150406526:150406578:150406992:150407092:150407469:150407727,	150406993	150407092	150407045	150407045	Frame_Shift_Del	G	-	p.G138fs
LIHC	TCGA-DD-A1EG-01	TNIP1	ENST00000315050.7,ENST00000518977.1,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150411847:150411944:150413168:150413360:150414562:150414628,	150413169	150413360	150413180	150413180	Frame_Shift_Del	G	-	p.L590fs
LIHC	TCGA-DD-A1EG-01	TNIP1	ENST00000524280.1,ENST00000315050.7,ENST00000518977.1,ENST00000523200.1,ENST00000389378.2,ENST00000519339.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1,ENST00000522100.1	chr5	150431725:150431820:150436326:150436518:150439878:150439956,	150436327	150436518	150436400	150436400	Frame_Shift_Del	C	-	p.G185fs
LIHC	TCGA-DD-A1EG-01	TNIP1	ENST00000389378.2	chr5	150443173:150443308:150444520:150444688:150460440:150460576,	150444521	150444688	150444562	150444562	Frame_Shift_Del	T	-	p.N32fs
LIHC	TCGA-DD-A1EG-01	TNIP1	ENST00000315050.7,ENST00000523338.1	chr5	150443173:150443308:150444520:150444692:150460440:150460576,150443173:150443308:150444520:150444692:150466645:150466719,	150444521	150444692	150444562	150444562	Frame_Shift_Del	T	-	p.N32fs
LIHC	TCGA-DD-A1EG-01	SLC36A2	ENST00000518280.1,ENST00000518617.1,ENST00000450886.1,ENST00000335244.4	chr5	150695753:150696649:150701606:150701776:150704846:150705013,	150701607	150701776	150701686	150701686	Frame_Shift_Del	G	-	p.P367fs
LIHC	TCGA-DD-A1EG-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150923048	150923048	Frame_Shift_Del	T	-	p.N2547fs
LIHC	TCGA-DD-A1EG-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924484	150924484	Frame_Shift_Del	G	-	p.P2068fs
LIHC	TCGA-DD-A1EG-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150925144	150925144	Frame_Shift_Del	A	-	p.P1848fs
LIHC	TCGA-DD-A1EG-01	G3BP1	ENST00000520177.1,ENST00000522367.1,ENST00000519832.1,ENST00000523519.1,ENST00000394123.3,ENST00000522761.1,ENST00000356245.3,ENST00000543466.1,ENST00000520006.1,ENST00000520578.1	chr5	151166163:151166276:151169883:151169965:151170449:151170587,	151169884	151169965	151169915	151169915	Frame_Shift_Del	G	-	p.G44fs
LIHC	TCGA-DD-A1EG-01	NMUR2	ENST00000255262.3	chr5	151771092:151772062:151775019:151775145:151777620:151777705,	151775020	151775145	151775056	151775056	Frame_Shift_Del	G	-	p.L301fs
LIHC	TCGA-DD-A1EG-01	GRIA1	ENST00000448073.4,ENST00000340592.5,ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153078426:153078633:153085256:153085627:153143993:153144192,	153085257	153085627	153085303	153085303	Frame_Shift_Del	A	-	p.E501fs
LIHC	TCGA-DD-A1EG-01	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755877	153755877	Frame_Shift_Del	C	-	p.F203fs
LIHC	TCGA-DD-A1EG-01	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755937	153755937	Frame_Shift_Del	G	-	p.L223fs
LIHC	TCGA-DD-A1EG-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181822	154181822	Frame_Shift_Del	G	-	p.G582fs
LIHC	TCGA-DD-A1EG-01	FAXDC2	ENST00000423554.1	chr5	154202086:154202137:154202867:154203152:154210360:154210482,	154202868	154203152	154203109	154203109	Frame_Shift_Del	A	-	p.F137fs
LIHC	TCGA-DD-A1EG-01	FAXDC2	ENST00000517938.1,ENST00000522825.1,ENST00000520581.1,ENST00000326080.5	chr5	154202086:154202137:154202946:154203152:154210360:154210482,	154202947	154203152	154203109	154203109	Frame_Shift_Del	A	-	p.F137fs
LIHC	TCGA-DD-A1EG-01	GEMIN5	ENST00000285873.7	chr5	154275651:154275903:154277999:154278210:154278750:154278870,	154278000	154278210	154278155	154278155	Frame_Shift_Del	C	-	p.D1064fs
LIHC	TCGA-DD-A1EG-01	GEMIN5	ENST00000285873.7	chr5	154275651:154275903:154277999:154278210:154278750:154278870,	154278000	154278210	154278160	154278160	Frame_Shift_Del	T	-	p.K1062fs
LIHC	TCGA-DD-A1EG-01	GEMIN5	ENST00000285873.7	chr5	154284922:154285036:154287150:154287378:154291286:154291458,	154287151	154287378	154287264	154287264	Frame_Shift_Del	T	-	p.N761fs
LIHC	TCGA-DD-A1EG-01	GEMIN5	ENST00000285873.7	chr5	154284922:154285036:154287150:154287378:154291286:154291458,	154287151	154287378	154287350	154287350	Frame_Shift_Del	T	-	p.K732fs
LIHC	TCGA-DD-A1EG-01	GEMIN5	ENST00000285873.7	chr5	154284922:154285036:154287150:154287378:154291286:154291458,	154287151	154287378	154287370	154287370	Frame_Shift_Del	T	-	p.S726fs
LIHC	TCGA-DD-A1EG-01	SGCD	ENST00000435422.3,ENST00000337851.4,ENST00000517913.1,ENST00000447401.1	chr5	155935610:155935712:156016240:156016328:156021941:156022061,	156016241	156016328	156016248	156016248	Frame_Shift_Del	C	-	p.A100fs
LIHC	TCGA-DD-A1EG-01	TIMD4	ENST00000274532.2	chr5	156353273:156353323:156375426:156375510:156376661:156376742,	156375427	156375510	156375460	156375460	Frame_Shift_Del	T	-	p.T271fs
LIHC	TCGA-DD-A1EG-01	CYFIP2	ENST00000347377.6,ENST00000377576.3,ENST00000541131.1,ENST00000522463.1,ENST00000523119.1,ENST00000517753.1,ENST00000523969.1,ENST00000521420.1,ENST00000519663.1,ENST00000520759.1,ENST00000523383.1,ENST00000435847.2,ENST00000442283.2,ENST00000318218.6,ENST00000519153.1	chr5	156816196:156816435:156817528:156817676:156819840:156820215,	156817529	156817676	156817599	156817599	Frame_Shift_Del	T	-	p.F1173fs
LIHC	TCGA-DD-A1EG-01	ADAM19	ENST00000517374.1	chr5	156904311:156904743:156908798:156908951:156915272:156915497,	156908799	156908951	156908947	156908947	Frame_Shift_Del	A	-	p.F852fs
LIHC	TCGA-DD-A1EG-01	SOX30	ENST00000265007.6	chr5	157073644:157073824:157075664:157075904:157078119:157079372,	157075665	157075904	157075825	157075825	Frame_Shift_Del	C	-	p.R349fs
LIHC	TCGA-DD-A1EG-01	CLINT1	ENST00000530742.1,ENST00000523094.1,ENST00000296951.5,ENST00000523908.1	chr5	157214609:157215000:157216370:157216575:157218710:157218732,	157216371	157216575	157216407	157216407	Frame_Shift_Del	G	-	p.Q500fs
LIHC	TCGA-DD-A1EG-01	CLINT1	ENST00000518855.1,ENST00000411809.2	chr5	157214609:157215000:157216370:157216521:157218710:157218732,	157216371	157216521	157216407	157216407	Frame_Shift_Del	G	-	p.Q500fs
LIHC	TCGA-DD-A1EG-01	UBLCP1	ENST00000296786.6,ENST00000519276.1	chr5	158705245:158705362:158710219:158710347:158711911:158713044,	158710220	158710347	158710316	158710316	Frame_Shift_Del	T	-	p.F300fs
LIHC	TCGA-DD-A1EG-01	PWWP2A	ENST00000521424.1	chr5	159504939:159505175:159507657:159507777:159520107:159520187,159504939:159505175:159507657:159507777:159516512:159516617,	159507658	159507777	159507678	159507678	Frame_Shift_Del	T	-	p.K550fs
LIHC	TCGA-DD-A1EG-01	FABP6	ENST00000523955.1,ENST00000393980.4,ENST00000393982.1,ENST00000521362.1,ENST00000402432.3	chr5	159659104:159659280:159661826:159661916:159665612:159665723,	159661827	159661916	159661868	159661868	Frame_Shift_Del	C	-	p.F144fs
LIHC	TCGA-DD-A1EG-01	PTTG1	ENST00000393964.1,ENST00000523659.1,ENST00000519287.1,ENST00000520452.1,ENST00000352433.5	chr5	159849346:159849410:159849715:159849900:159851243:159851301,	159849716	159849900	159849839	159849839	Frame_Shift_Del	A	-	p.E72fs
LIHC	TCGA-DD-A1EG-01	HMMR	ENST00000393915.4,ENST00000353866.3,ENST00000358715.3,ENST00000432118.2	chr5	162900184:162900259:162900384:162900563:162901062:162901211,	162900385	162900563	162900405	162900405	Frame_Shift_Del	A	-	p.E134fs
LIHC	TCGA-DD-A1EG-01	MAT2B	ENST00000518095.1,ENST00000321757.6	chr5	162932589:162932755:162939007:162939202:162940560:162940675,	162939008	162939202	162939139	162939139	Frame_Shift_Del	A	-	p.P65fs
LIHC	TCGA-DD-A1EG-01	TENM2	ENST00000520393.1	chr5	167248208:167248291:167302990:167303200:167379592:167379660,167182007:167182197:167302990:167303200:167379592:167379660,167000978:167001031:167302990:167303200:167379592:167379660,	167302991	167303200	167303144	167303144	Frame_Shift_Del	C	-	p.S98fs
LIHC	TCGA-DD-A1EG-01	RARS	ENST00000231572.3,ENST00000521939.1,ENST00000519346.1,ENST00000521329.1	chr5	167915696:167915741:167919663:167919852:167920898:167920963,	167919664	167919852	167919770	167919770	Frame_Shift_Del	A	-	p.E96fs
LIHC	TCGA-DD-A1EG-01	RARS	ENST00000522834.1	chr5	167915696:167915741:167919663:167919796:167920898:167920963,	167919664	167919796	167919770	167919770	Frame_Shift_Del	A	-	p.E96fs
LIHC	TCGA-DD-A1EG-01	RARS	ENST00000231572.3,ENST00000521939.1,ENST00000519346.1	chr5	167919663:167919852:167920898:167921007:167921554:167921655,	167920899	167921007	167920984	167920984	Frame_Shift_Del	A	-	p.E152fs
LIHC	TCGA-DD-A1EG-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937649	167937649	Frame_Shift_Del	A	-	p.L470fs
LIHC	TCGA-DD-A1EG-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937675	167937675	Frame_Shift_Del	A	-	p.E479fs
LIHC	TCGA-DD-A1EG-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168098202:168098488:168100181:168100336:168110970:168111101,	168100182	168100336	168100194	168100194	Frame_Shift_Del	G	-	p.L1277fs
LIHC	TCGA-DD-A1EG-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168098202:168098488:168100181:168100336:168110970:168111101,	168100182	168100336	168100283	168100283	Frame_Shift_Del	T	-	p.N1247fs
LIHC	TCGA-DD-A1EG-01	SLIT3	ENST00000518092.1,ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168112721:168112932:168113983:168114121:168119611:168119705,	168113984	168114121	168113994	168113994	Frame_Shift_Del	G	-	p.Q1102fs
LIHC	TCGA-DD-A1EG-01	SPDL1	ENST00000265295.4,ENST00000507232.1	chr5	169025479:169025583:169025975:169026163:169028283:169028629,	169025976	169026163	169026147	169026147	Frame_Shift_Del	A	-	p.L436fs
LIHC	TCGA-DD-A1EG-01	DOCK2	ENST00000256935.8,ENST00000524185.1	chr5	169111199:169111354:169116255:169116337:169122806:169122942,	169116256	169116337	169116292	169116292	Frame_Shift_Del	C	-	p.F266fs
LIHC	TCGA-DD-A1EG-01	LCP2	ENST00000520344.1,ENST00000046794.5,ENST00000521416.1	chr5	169683560:169683579:169685040:169685170:169685869:169685882,	169685041	169685170	169685088	169685088	Frame_Shift_Del	G	-	p.P351fs
LIHC	TCGA-DD-A1EG-01	LCP2	ENST00000520344.1,ENST00000046794.5,ENST00000521416.1	chr5	169683560:169683579:169685040:169685170:169685869:169685882,	169685041	169685170	169685150	169685150	Frame_Shift_Del	G	-	p.Q331fs
LIHC	TCGA-DD-A1EG-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170343468:170343588:170345716:170345863:170346444:170346617,	170345717	170345863	170345747	170345747	Frame_Shift_Del	T	-	p.F329fs
LIHC	TCGA-DD-A1EG-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170343468:170343588:170345716:170345863:170346444:170346617,	170345717	170345863	170345756	170345756	Frame_Shift_Del	T	-	p.F332fs
LIHC	TCGA-DD-A1EG-01	RANBP17	ENST00000519949.1,ENST00000521759.1,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170669685:170669824:170692684:170692851:170720886:170720985,	170692685	170692851	170692755	170692755	Frame_Shift_Del	A	-	p.A949fs
LIHC	TCGA-DD-A1EG-01	STK10	ENST00000517524.1,ENST00000522936.1,ENST00000176763.5	chr5	171532661:171532741:171533623:171533818:171534783:171534856,	171533624	171533818	171533700	171533700	Frame_Shift_Del	G	-	p.H238fs
LIHC	TCGA-DD-A1EG-01	STK10	ENST00000517524.1,ENST00000522936.1,ENST00000176763.5	chr5	171532661:171532741:171533623:171533818:171534783:171534856,	171533624	171533818	171533761	171533761	Frame_Shift_Del	T	-	p.K217fs
LIHC	TCGA-DD-A1EG-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172513503:172513629:172517317:172518404:172535626:172535821,	172517318	172518404	172517365	172517365	Frame_Shift_Del	T	-	p.S61fs
LIHC	TCGA-DD-A1EG-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172537524:172537714:172539308:172539382:172550082:172550205,	172539309	172539382	172539332	172539332	Frame_Shift_Del	C	-	p.A546fs
LIHC	TCGA-DD-A1EG-01	THOC3	ENST00000265097.4,ENST00000511062.1,ENST00000514250.1,ENST00000510300.1,ENST00000513482.1	chr5	175388422:175388437:175391953:175392158:175394113:175394270,	175391954	175392158	175392028	175392028	Frame_Shift_Del	G	-	p.V185fs
LIHC	TCGA-DD-A1EG-01	THOC3	ENST00000265097.4,ENST00000513482.1	chr5	175391953:175392158:175394113:175394270:175394944:175395271,	175394114	175394270	175394193	175394193	Frame_Shift_Del	A	-	p.F115fs
LIHC	TCGA-DD-A1EG-01	SIMC1	ENST00000430704.2,ENST00000341199.6,ENST00000332772.4,ENST00000443967.1	chr5	175749275:175749428:175751631:175751760:175763722:175763879,	175751632	175751760	175751742	175751742	Frame_Shift_Del	T	-	p.I699fs
LIHC	TCGA-DD-A1EG-01	FAF2	ENST00000261942.6,ENST00000510446.1	chr5	175906188:175906257:175913355:175913490:175915951:175916028,	175913356	175913490	175913425	175913425	Frame_Shift_Del	C	-	p.P68fs
LIHC	TCGA-DD-A1EG-01	CDHR2	ENST00000261944.5,ENST00000510636.1,ENST00000506348.1	chr5	176012954:176013026:176013793:176013843:176016031:176016183,	176013794	176013843	176013817	176013817	Frame_Shift_Del	C	-	p.P944fs
LIHC	TCGA-DD-A1EG-01	HK3	ENST00000292432.5,ENST00000506834.1	chr5	176308944:176309128:176310770:176310870:176311039:176311135,	176310771	176310870	176310795	176310795	Frame_Shift_Del	G	-	p.R677fs
LIHC	TCGA-DD-A1EG-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000511320.1	chr5	176385093:176385155:176395555:176396292:176396601:176396707,	176395556	176396292	176395964	176395964	Frame_Shift_Del	G	-	p.A264fs
LIHC	TCGA-DD-A1EG-01	UIMC1	ENST00000506128.1,ENST00000510698.1	chr5	176402416:176402481:176409469:176409624:176433650:176433715,176402416:176402481:176409469:176409624:176449464:176449603,176402416:176402481:176409469:176409624:176433284:176433366,176402416:176402481:176409469:176409624:176433539:176433571,	176409470	176409624	176409596	176409596	Frame_Shift_Del	T	-	p.K7fs
LIHC	TCGA-DD-A1EG-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176636686	176636686	Frame_Shift_Del	A	-	p.E429fs
LIHC	TCGA-DD-A1EG-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637289	176637289	Frame_Shift_Del	A	-	p.E630fs
LIHC	TCGA-DD-A1EG-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637933	176637933	Frame_Shift_Del	A	-	p.K845fs
LIHC	TCGA-DD-A1EG-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638557	176638557	Frame_Shift_Del	A	-	p.K1053fs
LIHC	TCGA-DD-A1EG-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176700672:176700785:176707565:176707835:176709465:176709582,	176707566	176707835	176707817	176707817	Frame_Shift_Del	A	-	p.T1958fs
LIHC	TCGA-DD-A1EG-01	GRK6	ENST00000506296.1,ENST00000511244.1,ENST00000507633.1,ENST00000393576.3,ENST00000528793.1,ENST00000515666.1,ENST00000355472.5,ENST00000355958.5	chr5	176859233:176859311:176859706:176859807:176860147:176860190,	176859707	176859807	176859721	176859721	Frame_Shift_Del	C	-	p.I118fs
LIHC	TCGA-DD-A1EG-01	DOK3	ENST00000312943.6,ENST00000377112.4,ENST00000500323.2	chr5	176929088:176930393:176931743:176931916:176932011:176932111,	176931744	176931916	176931855	176931855	Frame_Shift_Del	C	-	p.G178fs
LIHC	TCGA-DD-A1EG-01	DDX41	ENST00000504781.1	chr5	176942186:176942340:176942685:176942822:176942929:176942990,176942186:176942259:176942685:176942822:176942929:176942990,176942186:176942362:176942685:176942822:176942929:176942990,	176942686	176942822	176942809	176942809	Frame_Shift_Del	G	-	p.R150fs
LIHC	TCGA-DD-A1EG-01	FAM193B	ENST00000443375.2,ENST00000524677.1	chr5	176952197:176952206:176958282:176958522:176959443:176959534,	176958283	176958522	176958476	176958476	Frame_Shift_Del	T	-	p.K328fs
LIHC	TCGA-DD-A1EG-01	HNRNPAB	ENST00000514633.1,ENST00000355836.5,ENST00000506259.1,ENST00000515193.1,ENST00000504898.1,ENST00000506339.1,ENST00000358344.3	chr5	177631815:177632047:177632842:177633011:177633732:177633867,	177632843	177633011	177632880	177632880	Frame_Shift_Del	A	-	p.K84fs
LIHC	TCGA-DD-A1EG-01	HNRNPAB	ENST00000506339.1	chr5	177636330:177636448:177637132:177637273:177637553:177638120,177636330:177636433:177637132:177637273:177637553:177638156,	177637133	177637273	177637261	177637261	Frame_Shift_Del	G	-	p.G306fs
LIHC	TCGA-DD-A1EG-01	PHYKPL	ENST00000493197.1,ENST00000506045.1,ENST00000393488.2,ENST00000481436.1,ENST00000476487.1,ENST00000308158.5,ENST00000474052.1,ENST00000489262.1	chr5	177641804:177641886:177642276:177642431:177649355:177649477,	177642277	177642431	177642315	177642315	Frame_Shift_Del	C	-	p.G348fs
LIHC	TCGA-DD-A1EG-01	COL23A1	ENST00000390654.3	chr5	177674526:177674553:177674775:177674832:177675192:177675255,	177674776	177674832	177674786	177674786	Frame_Shift_Del	G	-	p.P420fs
LIHC	TCGA-DD-A1EG-01	COL23A1	ENST00000390654.3	chr5	177674526:177674553:177674775:177674832:177675192:177675255,	177674776	177674832	177674795	177674795	Frame_Shift_Del	G	-	p.P417fs
LIHC	TCGA-DD-A1EG-01	COL23A1	ENST00000390654.3	chr5	177674526:177674553:177674775:177674832:177675192:177675255,	177674776	177674832	177674804	177674804	Frame_Shift_Del	G	-	p.P414fs
LIHC	TCGA-DD-A1EG-01	COL23A1	ENST00000390654.3	chr5	177675192:177675255:177676117:177676207:177677061:177677106,	177676118	177676207	177676182	177676182	Frame_Shift_Del	G	-	p.P362fs
LIHC	TCGA-DD-A1EG-01	COL23A1	ENST00000390654.3	chr5	177675192:177675255:177676117:177676207:177677061:177677106,	177676118	177676207	177676202	177676202	Frame_Shift_Del	G	-	p.P355fs
LIHC	TCGA-DD-A1EG-01	ZNF354A	ENST00000335815.2,ENST00000520331.1	chr5	178152376:178152472:178153999:178154126:178155990:178156074,	178154000	178154126	178154062	178154062	Frame_Shift_Del	G	-	p.P33fs
LIHC	TCGA-DD-A1EG-01	RUFY1	ENST00000377001.2,ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1,ENST00000393448.2,ENST00000502434.1	chr5	179018625:179018742:179020478:179020646:179021866:179021899,	179020479	179020646	179020486	179020486	Frame_Shift_Del	A	-	p.E418fs
LIHC	TCGA-DD-A1EG-01	HNRNPH1	ENST00000519455.1	chr5	179047943:179048036:179048371:179048398:179050037:179050165,	179048372	179048398	179048378	179048378	Frame_Shift_Del	C	-	p.A40fs
LIHC	TCGA-DD-A1EG-01	HNRNPH1	ENST00000506721.1,ENST00000510431.1,ENST00000515158.1,ENST00000503105.1,ENST00000510678.1,ENST00000521116.1,ENST00000510411.1,ENST00000513972.1,ENST00000329433.6,ENST00000504348.1,ENST00000356731.5,ENST00000442819.2,ENST00000513225.1,ENST00000519707.1,ENST00000508103.1,ENST00000393432.4,ENST00000514731.1,ENST00000505811.1,ENST00000524180.1	chr5	179047943:179048036:179048242:179048398:179050037:179050165,	179048243	179048398	179048378	179048378	Frame_Shift_Del	C	-	p.A40fs
LIHC	TCGA-DD-A1EG-01	HNRNPH1	ENST00000519455.1	chr5	179047943:179048036:179048371:179048398:179050037:179050165,	179048372	179048398	179048383	179048383	Frame_Shift_Del	T	-	p.N38fs
LIHC	TCGA-DD-A1EG-01	HNRNPH1	ENST00000506721.1,ENST00000510431.1,ENST00000515158.1,ENST00000503105.1,ENST00000510678.1,ENST00000521116.1,ENST00000510411.1,ENST00000513972.1,ENST00000329433.6,ENST00000504348.1,ENST00000356731.5,ENST00000442819.2,ENST00000513225.1,ENST00000519707.1,ENST00000508103.1,ENST00000393432.4,ENST00000514731.1,ENST00000505811.1,ENST00000524180.1	chr5	179047943:179048036:179048242:179048398:179050037:179050165,	179048243	179048398	179048383	179048383	Frame_Shift_Del	T	-	p.N38fs
LIHC	TCGA-DD-A1EG-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000502673.1,ENST00000512607.2,ENST00000452673.2	chr5	179143105:179143295:179146668:179146782:179147404:179147495,	179146669	179146782	179146769	179146769	Frame_Shift_Del	A	-	p.K338fs
LIHC	TCGA-DD-A1EG-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000512607.2,ENST00000452673.2	chr5	179147404:179147561:179149804:179150020:179150660:179150780,	179149805	179150020	179150009	179150009	Frame_Shift_Del	G	-	p.G463fs
LIHC	TCGA-DD-A1EG-01	MAML1	ENST00000503050.1,ENST00000292599.3	chr5	179192326:179193742:179195850:179196090:179198147:179198244,	179195851	179196090	179195999	179195999	Frame_Shift_Del	T	-	p.L628fs
LIHC	TCGA-DD-A1EG-01	TBC1D9B	ENST00000356834.3,ENST00000355235.3	chr5	179306046:179306197:179306627:179306789:179315102:179315192,	179306628	179306789	179306735	179306735	Frame_Shift_Del	G	-	p.L437fs
LIHC	TCGA-DD-A1EG-01	RNF130	ENST00000520911.1,ENST00000521389.1	chr5	179382479:179382669:179390470:179390564:179393805:179394010,	179390471	179390564	179390517	179390517	Frame_Shift_Del	G	-	p.L400fs
LIHC	TCGA-DD-A1EG-01	MAPK9	ENST00000539014.1,ENST00000397072.3,ENST00000393362.4,ENST00000347470.4,ENST00000455781.1,ENST00000343111.6,ENST00000452135.2,ENST00000393360.3,ENST00000425491.2	chr5	179688683:179688822:179691780:179691839:179696279:179696409,	179691781	179691839	179691803	179691803	Frame_Shift_Del	T	-	p.T97fs
LIHC	TCGA-DD-A1EG-01	GFPT2	ENST00000253778.8	chr5	179731771:179731939:179734175:179734303:179739429:179739544,	179734176	179734303	179734215	179734215	Frame_Shift_Del	C	-	p.G545fs
LIHC	TCGA-DD-A1EG-01	BTNL9	ENST00000327705.9,ENST00000376842.3,ENST00000512570.1	chr5	180482988:180483015:180485351:180485378:180486236:180486312,	180485352	180485378	180485367	180485367	Frame_Shift_Del	A	-	p.Q324fs
LIHC	TCGA-DD-A1EG-01	IRF4	ENST00000493114.1	chr6	391767:391809:393097:393368:394820:395007,	393098	393368	393224	393224	Frame_Shift_Del	C	-	p.L24fs
LIHC	TCGA-DD-A1EG-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	532468:532610:549174:549291:553853:553920,	549175	549291	549214	549214	Frame_Shift_Del	A	-	p.F733fs
LIHC	TCGA-DD-A1EG-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	564863:564929:572519:572644:576756:576882,	572520	572644	572601	572601	Frame_Shift_Del	T	-	p.K454fs
LIHC	TCGA-DD-A1EG-01	EXOC2	ENST00000230449.4	chr6	619429:619543:629834:629961:632940:633117,	629835	629961	629879	629879	Frame_Shift_Del	G	-	p.P126fs
LIHC	TCGA-DD-A1EG-01	SERPINB1	ENST00000380739.5,ENST00000537185.1	chr6	2833641:2834246:2836089:2836257:2836341:2836484,	2836090	2836257	2836216	2836216	Frame_Shift_Del	T	-	p.K203fs
LIHC	TCGA-DD-A1EG-01	SERPINB6	ENST00000380539.1	chr6	2955757:2955904:2959401:2959576:2971724:2971819,2955757:2955904:2959401:2959576:2971350:2971440,2955757:2955904:2959401:2959576:2971766:2972090,2955757:2955904:2959401:2959576:2962127:2962342,2955757:2955904:2959401:2959576:2971481:2971539,	2959402	2959576	2959481	2959481	Frame_Shift_Del	A	-	p.F29fs
LIHC	TCGA-DD-A1EG-01	RIPK1	ENST00000259808.4	chr6	3068657:3068895:3076997:3077221:3078012:3078169,	3076998	3077221	3077139	3077139	Frame_Shift_Del	T	-	p.F28fs
LIHC	TCGA-DD-A1EG-01	RIPK1	ENST00000380409.2,ENST00000259808.4,ENST00000479389.1,ENST00000541791.1	chr6	3085492:3085642:3089814:3089891:3104458:3104549,	3089815	3089891	3089824	3089824	Frame_Shift_Del	A	-	p.E283fs
LIHC	TCGA-DD-A1EG-01	CDYL	ENST00000397588.3	chr6	4776675:4777041:4891946:4892613:4935748:4936005,	4891947	4892613	4891977	4891977	Frame_Shift_Del	A	-	p.K74fs
LIHC	TCGA-DD-A1EG-01	CDYL	ENST00000397588.3	chr6	4776675:4777041:4891946:4892613:4935748:4936005,	4891947	4892613	4892473	4892473	Frame_Shift_Del	A	-	p.E238fs
LIHC	TCGA-DD-A1EG-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7230007	7230007	Frame_Shift_Del	A	-	p.N559fs
LIHC	TCGA-DD-A1EG-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7230286	7230286	Frame_Shift_Del	T	-	p.F652fs
LIHC	TCGA-DD-A1EG-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7231410	7231410	Frame_Shift_Del	C	-	p.S1026fs
LIHC	TCGA-DD-A1EG-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7231656	7231656	Frame_Shift_Del	C	-	p.V1108fs
LIHC	TCGA-DD-A1EG-01	RIOK1	ENST00000379834.2,ENST00000264874.3	chr6	7411564:7411684:7413121:7413175:7414470:7414623,	7413122	7413175	7413168	7413168	Frame_Shift_Del	T	-	p.V479fs
LIHC	TCGA-DD-A1EG-01	SNRNP48	ENST00000342415.5	chr6	7595259:7595334:7601568:7601757:7602855:7602977,	7601569	7601757	7601668	7601668	Frame_Shift_Del	T	-	p.V169fs
LIHC	TCGA-DD-A1EG-01	SNRNP48	ENST00000342415.5	chr6	7595259:7595334:7601568:7601757:7602855:7602977,	7601569	7601757	7601682	7601682	Frame_Shift_Del	A	-	p.K175fs
LIHC	TCGA-DD-A1EG-01	TFAP2A	ENST00000497266.1,ENST00000482890.1,ENST00000488193.1,ENST00000379608.3,ENST00000379604.2,ENST00000489805.1,ENST00000379613.3,ENST00000319516.4	chr6	10398920:10398938:10400680:10400822:10402724:10402843,	10400681	10400822	10400699	10400699	Frame_Shift_Del	T	-	p.N338fs
LIHC	TCGA-DD-A1EG-01	GCNT2	ENST00000379597.3,ENST00000495262.1	chr6	10530044:10530069:10621583:10621676:10626649:10626697,	10621584	10621676	10621611	10621611	Frame_Shift_Del	C	-	p.S318fs
LIHC	TCGA-DD-A1EG-01	ELOVL2	ENST00000354666.3	chr6	10990550:10990675:10995239:10995411:11000319:11000397,	10995240	10995411	10995330	10995330	Frame_Shift_Del	T	-	p.T139fs
LIHC	TCGA-DD-A1EG-01	ADTRP	ENST00000414691.3,ENST00000512139.1,ENST00000229583.5,ENST00000379413.2	chr6	11723581:11723733:11735800:11735916:11766506:11766565,	11735801	11735916	11735899	11735899	Frame_Shift_Del	G	-	p.P136fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120206	12120206	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120222	12120222	Frame_Shift_Del	C	-	p.S65fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121133	12121133	Frame_Shift_Del	C	-	p.P370fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121631	12121631	Frame_Shift_Del	C	-	p.P535fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12123182	12123182	Frame_Shift_Del	C	-	p.P1052fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124165	12124165	Frame_Shift_Del	G	-	p.E1379fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124209	12124209	Frame_Shift_Del	C	-	p.T1394fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124423	12124423	Frame_Shift_Del	G	-	p.Q1465fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125232	12125232	Frame_Shift_Del	C	-	p.S1735fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125852	12125852	Frame_Shift_Del	T	-	p.F1942fs
LIHC	TCGA-DD-A1EG-01	SIRT5	ENST00000359782.3,ENST00000379262.4,ENST00000606117.1	chr6	13584307:13584457:13591900:13592126:13595708:13595796,13588562:13588696:13591900:13592126:13595708:13595796,	13591901	13592126	13591922	13591922	Frame_Shift_Del	T	-	p.F91fs
LIHC	TCGA-DD-A1EG-01	SIRT5	ENST00000379262.4,ENST00000606117.1,ENST00000397350.2,ENST00000379250.5	chr6	13591900:13592126:13595708:13595796:13597194:13597248,	13595709	13595796	13595720	13595720	Frame_Shift_Del	A	-	p.K163fs
LIHC	TCGA-DD-A1EG-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13621009	13621009	Frame_Shift_Del	A	-	p.K242fs
LIHC	TCGA-DD-A1EG-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13621045	13621045	Frame_Shift_Del	A	-	p.K254fs
LIHC	TCGA-DD-A1EG-01	RANBP9	ENST00000539980.1,ENST00000011619.3	chr6	13632601:13632753:13634662:13634784:13638039:13638187,	13634663	13634784	13634713	13634713	Frame_Shift_Del	T	-	p.N582fs
LIHC	TCGA-DD-A1EG-01	RANBP9	ENST00000539980.1,ENST00000011619.3	chr6	13642710:13642823:13644776:13644961:13652890:13652913,	13644777	13644961	13644797	13644797	Frame_Shift_Del	T	-	p.E364fs
LIHC	TCGA-DD-A1EG-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15452236:15452406:15468772:15468949:15487537:15487773,	15468773	15468949	15468913	15468913	Frame_Shift_Del	A	-	p.K212fs
LIHC	TCGA-DD-A1EG-01	DTNBP1	ENST00000515875.1	chr6	15637974:15638035:15652317:15652371:15663044:15663151,	15652318	15652371	15652323	15652323	Frame_Shift_Del	T	-	p.K35fs
LIHC	TCGA-DD-A1EG-01	DTNBP1	ENST00000515875.1	chr6	15637974:15638035:15652317:15652371:15663044:15663151,	15652318	15652371	15652328	15652328	Frame_Shift_Del	T	-	p.S34fs
LIHC	TCGA-DD-A1EG-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327684	16327684	Frame_Shift_Del	G	-	p.P286fs
LIHC	TCGA-DD-A1EG-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16328312	16328312	Frame_Shift_Del	A	-	p.L77fs
LIHC	TCGA-DD-A1EG-01	CAP2	ENST00000489374.1	chr6	17514079:17514185:17539499:17539689:17541203:17541379,17507399:17507543:17539499:17539689:17541203:17541379,17463226:17463304:17539499:17539689:17541203:17541379,	17539500	17539689	17539617	17539617	Frame_Shift_Del	A	-	p.K253fs
LIHC	TCGA-DD-A1EG-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17616757:17616926:17624791:17625064:17626038:17626395,	17624792	17625064	17624910	17624910	Frame_Shift_Del	G	-	p.P1352fs
LIHC	TCGA-DD-A1EG-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17662248:17662301:17665469:17665616:17669205:17669259,	17665470	17665616	17665533	17665533	Frame_Shift_Del	T	-	p.K384fs
LIHC	TCGA-DD-A1EG-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000378826.2	chr6	17764385:17765177:17772138:17772290:17773708:17773814,	17772139	17772290	17772247	17772247	Frame_Shift_Del	A	-	p.F1443fs
LIHC	TCGA-DD-A1EG-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000378816.5,ENST00000358380.6,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17779177:17779330:17779822:17779915:17780960:17781137,	17779823	17779915	17779867	17779867	Frame_Shift_Del	A	-	p.Y1286fs
LIHC	TCGA-DD-A1EG-01	TPMT	ENST00000309983.4	chr6	18134034:18134120:18139193:18139268:18139895:18139948,	18139194	18139268	18139240	18139240	Frame_Shift_Del	A	-	p.W150fs
LIHC	TCGA-DD-A1EG-01	TPMT	ENST00000309983.4	chr6	18143826:18143959:18148053:18148146:18149218:18149402,	18148054	18148146	18148086	18148086	Frame_Shift_Del	A	-	p.F67fs
LIHC	TCGA-DD-A1EG-01	KDM1B	ENST00000388870.2,ENST00000297792.5,ENST00000397244.1	chr6	18160113:18160213:18161557:18161685:18163065:18163155,	18161558	18161685	18161631	18161631	Frame_Shift_Del	A	-	p.E54fs
LIHC	TCGA-DD-A1EG-01	KDM1B	ENST00000297792.5,ENST00000397244.1	chr6	18171593:18171710:18186002:18186041:18197287:18197464,	18186003	18186041	18186023	18186023	Frame_Shift_Del	T	-	p.C185fs
LIHC	TCGA-DD-A1EG-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18249928	18249928	Frame_Shift_Del	T	-	p.N239fs
LIHC	TCGA-DD-A1EG-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18250049	18250049	Frame_Shift_Del	T	-	p.T199fs
LIHC	TCGA-DD-A1EG-01	E2F3	ENST00000535432.1,ENST00000346618.3	chr6	20486919:20487034:20488343:20488479:20490398:20493789,	20488344	20488479	20488428	20488428	Frame_Shift_Del	A	-	p.K362fs
LIHC	TCGA-DD-A1EG-01	CDKAL1	ENST00000274695.4,ENST00000378610.1	chr6	20546578:20546754:20548823:20548936:20649523:20649608,	20548824	20548936	20548862	20548862	Frame_Shift_Del	G	-	p.W71fs
LIHC	TCGA-DD-A1EG-01	MRS2	ENST00000274747.7,ENST00000543597.1,ENST00000443868.2,ENST00000535061.1,ENST00000378386.3	chr6	24418688:24418806:24423164:24423278:24423811:24424067,	24423165	24423278	24423175	24423175	Frame_Shift_Del	T	-	p.I373fs
LIHC	TCGA-DD-A1EG-01	ALDH5A1	ENST00000546278.1,ENST00000491546.1,ENST00000357578.3	chr6	24505096:24505213:24515394:24515538:24520628:24520772,	24515395	24515538	24515503	24515503	Frame_Shift_Del	A	-	p.K279fs
LIHC	TCGA-DD-A1EG-01	SLC17A3	ENST00000397060.4,ENST00000361703.6,ENST00000360657.3	chr6	25850275:25850405:25850686:25850848:25850986:25851105,	25850687	25850848	25850697	25850697	Frame_Shift_Del	T	-	p.N328fs
LIHC	TCGA-DD-A1EG-01	SLC17A3	ENST00000308453.5,ENST00000397060.4	chr6	25861851:25861939:25862023:25862257:25862460:25862672,	25862024	25862257	25862125	25862125	Frame_Shift_Del	A	-	p.S146fs
LIHC	TCGA-DD-A1EG-01	HFE	ENST00000483782.1	chr6	26087666:26087744:26091068:26091817:26092912:26093188,	26091069	26091817	26091312	26091312	Frame_Shift_Del	A	-	p.E107fs
LIHC	TCGA-DD-A1EG-01	HFE	ENST00000317896.7	chr6	26087666:26087744:26091068:26091332:26091541:26091817,26087666:26087744:26091068:26091332:26092912:26093188,	26091069	26091332	26091312	26091312	Frame_Shift_Del	A	-	p.E107fs
LIHC	TCGA-DD-A1EG-01	BTN2A2	ENST00000482536.1	chr6	26383445:26383527:26384019:26384143:26388240:26388387,26383370:26383409:26384019:26384143:26388240:26388387,26383370:26383409:26384019:26384143:26385242:26385437,26383370:26383409:26384019:26384143:26390232:26390365,	26384020	26384143	26384090	26384090	Frame_Shift_Del	C	-	p.S14fs
LIHC	TCGA-DD-A1EG-01	BTN2A2	ENST00000493275.1,ENST00000469230.1,ENST00000356709.4,ENST00000416795.2	chr6	26384019:26384143:26385242:26385590:26390232:26390365,26384019:26384143:26385242:26385590:26388240:26388387,	26385243	26385590	26385329	26385329	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A1EG-01	BTN3A1	ENST00000082468.7,ENST00000289361.6,ENST00000414912.2	chr6	26411336:26411363:26411782:26411809:26413396:26414301,	26411783	26411809	26411788	26411788	Frame_Shift_Del	A	-	p.K334fs
LIHC	TCGA-DD-A1EG-01	PGBD1	ENST00000259883.3,ENST00000405948.2	chr6	28264592:28264722:28265671:28265768:28268500:28270325,	28265672	28265768	28265675	28265675	Frame_Shift_Del	A	-	p.E260fs
LIHC	TCGA-DD-A1EG-01	TRIM27	ENST00000377199.3,ENST00000377194.3	chr6	28875012:28875039:28876584:28876617:28876749:28876766,	28876585	28876617	28876612	28876612	Frame_Shift_Del	T	-	p.M298fs
LIHC	TCGA-DD-A1EG-01	GABBR1	ENST00000377012.4,ENST00000376977.3,ENST00000355973.3,ENST00000377034.4,ENST00000472823.1,ENST00000477029.1,ENST00000485508.1,ENST00000494877.1,ENST00000377016.4,ENST00000491829.1	chr6	29589880:29589982:29591081:29591252:29591666:29591801,	29591082	29591252	29591182	29591182	Frame_Shift_Del	G	-	p.P288fs
LIHC	TCGA-DD-A1EG-01	GABBR1	ENST00000376977.3,ENST00000377034.4,ENST00000472823.1,ENST00000467259.1,ENST00000377016.4,ENST00000491829.1	chr6	29599270:29599376:29600077:29600162:29600626:29600711,	29600078	29600162	29600088	29600088	Frame_Shift_Del	G	-	p.A25fs
LIHC	TCGA-DD-A1EG-01	HLA-A	ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000396634.1	chr6	29912839:29912868:29913010:29913058:29913227:29913660,	29913011	29913058	29913055	29913055	Frame_Shift_Del	A	-	p.K364fs
LIHC	TCGA-DD-A1EG-01	TRIM31	ENST00000485864.1,ENST00000376734.3,ENST00000540829.1	chr6	30072972:30073019:30075829:30075945:30076802:30076825,	30075830	30075945	30075888	30075888	Frame_Shift_Del	T	-	p.K275fs
LIHC	TCGA-DD-A1EG-01	TRIM26	ENST00000453195.1,ENST00000454678.2,ENST00000437089.1	chr6	30157789:30157812:30164292:30164523:30166205:30166301,	30164293	30164523	30164367	30164367	Frame_Shift_Del	C	-	p.E231fs
LIHC	TCGA-DD-A1EG-01	PRR3	ENST00000498336.1	chr6	30525123:30525227:30525926:30525989:30529104:30529285,	30525927	30525989	30525950	30525950	Frame_Shift_Del	C	-	p.P45fs
LIHC	TCGA-DD-A1EG-01	MRPS18B	ENST00000259873.4,ENST00000472229.1	chr6	30587485:30587583:30587697:30587766:30590608:30590675,	30587698	30587766	30587707	30587707	Frame_Shift_Del	A	-	p.K99fs
LIHC	TCGA-DD-A1EG-01	DDR1	ENST00000376568.3,ENST00000503180.1,ENST00000376569.3,ENST00000507901.1,ENST00000482873.2,ENST00000509639.1,ENST00000505534.1,ENST00000515881.1,ENST00000504152.1	chr6	30850731:30850760:30856464:30856591:30856684:30856724,30852427:30852487:30856464:30856591:30856684:30856724,	30856465	30856591	30856513	30856513	Frame_Shift_Del	C	-	p.P3fs
LIHC	TCGA-DD-A1EG-01	DDR1	ENST00000376568.3,ENST00000376569.3,ENST00000376567.2,ENST00000454612.2,ENST00000511510.1,ENST00000512694.1,ENST00000482873.2,ENST00000418800.2,ENST00000376575.3,ENST00000503628.1,ENST00000431373.1,ENST00000503495.1,ENST00000428153.2,ENST00000437124.2,ENST00000508312.1,ENST00000421124.2,ENST00000452441.1,ENST00000396342.2,ENST00000504927.1,ENST00000513749.1,ENST00000446312.1,ENST00000513240.1,ENST00000324771.8,ENST00000376570.4,ENST00000460944.2	chr6	30856713:30856787:30856978:30857207:30858749:30858760,	30856979	30857207	30857112	30857112	Frame_Shift_Del	G	-	p.G109fs
LIHC	TCGA-DD-A1EG-01	DDR1	ENST00000376568.3,ENST00000376575.3,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8	chr6	30862364:30862448:30864397:30864642:30864790:30864823,30863180:30863291:30864397:30864642:30864790:30864823,	30864398	30864642	30864553	30864553	Frame_Shift_Del	G	-	p.G594fs
LIHC	TCGA-DD-A1EG-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30863180:30863291:30864507:30864642:30864790:30864823,	30864508	30864642	30864553	30864553	Frame_Shift_Del	G	-	p.G594fs
LIHC	TCGA-DD-A1EG-01	DDR1	ENST00000376568.3,ENST00000376575.3,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8	chr6	30862364:30862448:30864397:30864642:30864790:30864823,30863180:30863291:30864397:30864642:30864790:30864823,	30864398	30864642	30864571	30864571	Frame_Shift_Del	C	-	p.P601fs
LIHC	TCGA-DD-A1EG-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30863180:30863291:30864507:30864642:30864790:30864823,	30864508	30864642	30864571	30864571	Frame_Shift_Del	C	-	p.P601fs
LIHC	TCGA-DD-A1EG-01	DDR1	ENST00000376568.3,ENST00000376569.3,ENST00000376567.2,ENST00000454612.2,ENST00000482873.2,ENST00000418800.2,ENST00000376575.3,ENST00000508312.1,ENST00000452441.1,ENST00000446312.1,ENST00000513240.1,ENST00000324771.8,ENST00000376570.4	chr6	30865849:30866084:30866664:30866814:30866932:30867018,	30866665	30866814	30866798	30866798	Frame_Shift_Del	G	-	p.R862fs
LIHC	TCGA-DD-A1EG-01	VARS2	ENST00000469358.1	chr6	30889892:30890018:30890158:30890331:30890482:30890551,	30890159	30890331	30890298	30890298	Frame_Shift_Del	C	-	p.D668fs
LIHC	TCGA-DD-A1EG-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000542001.1,ENST00000476162.1,ENST00000541562.1,ENST00000321897.5	chr6	30889892:30890018:30890226:30890331:30890482:30890551,	30890227	30890331	30890298	30890298	Frame_Shift_Del	C	-	p.D668fs
LIHC	TCGA-DD-A1EG-01	MICB	ENST00000538442.1,ENST00000252229.6	chr6	31473393:31473648:31473919:31474207:31474798:31475077,	31473920	31474207	31473977	31473977	Frame_Shift_Del	G	-	p.R128fs
LIHC	TCGA-DD-A1EG-01	MICB	ENST00000538442.1,ENST00000252229.6	chr6	31473393:31473648:31473919:31474207:31474798:31475077,	31473920	31474207	31474051	31474051	Frame_Shift_Del	C	-	p.P153fs
LIHC	TCGA-DD-A1EG-01	PRRC2A	ENST00000376033.2,ENST00000464890.1,ENST00000376007.4	chr6	31593796:31593939:31594548:31594639:31594758:31594851,	31594549	31594639	31594637	31594637	Frame_Shift_Del	C	-	p.G357fs
LIHC	TCGA-DD-A1EG-01	PRRC2A	ENST00000376033.2,ENST00000376007.4,ENST00000487839.1	chr6	31603743:31603826:31603985:31604196:31604286:31604385,	31603986	31604196	31604005	31604005	Frame_Shift_Del	C	-	p.P1883fs
LIHC	TCGA-DD-A1EG-01	PRRC2A	ENST00000376033.2,ENST00000376007.4,ENST00000487839.1	chr6	31603743:31603826:31603985:31604196:31604286:31604385,	31603986	31604196	31604044	31604044	Frame_Shift_Del	T	-	p.L1895fs
LIHC	TCGA-DD-A1EG-01	PRRC2A	ENST00000376033.2,ENST00000376007.4,ENST00000487839.1	chr6	31603743:31603826:31603985:31604196:31604286:31604385,	31603986	31604196	31604055	31604055	Frame_Shift_Del	G	-	p.K1898fs
LIHC	TCGA-DD-A1EG-01	BAG6	ENST00000375976.4,ENST00000404765.2,ENST00000375964.6,ENST00000211379.5,ENST00000441793.1,ENST00000439687.2,ENST00000362049.6	chr6	31608421:31608481:31608568:31608715:31608880:31609005,	31608569	31608715	31608586	31608586	Frame_Shift_Del	C	-	p.V973fs
LIHC	TCGA-DD-A1EG-01	BAG6	ENST00000375976.4,ENST00000456622.1	chr6	31617286:31617404:31619432:31619553:31620023:31620135,	31619433	31619553	31619438	31619438	Frame_Shift_Del	C	-	p.A35fs
LIHC	TCGA-DD-A1EG-01	APOM	ENST00000375920.4	chr6	31620193:31620328:31624248:31624403:31625001:31625075,	31624249	31624403	31624279	31624279	Frame_Shift_Del	T	-	p.F49fs
LIHC	TCGA-DD-A1EG-01	DDAH2	ENST00000488119.1,ENST00000375792.3	chr6	31696422:31696522:31696641:31697002:31697827:31698004,	31696642	31697002	31696933	31696933	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A1EG-01	DDAH2	ENST00000375787.2	chr6	31696422:31696522:31696641:31696998:31697827:31698004,	31696642	31696998	31696933	31696933	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A1EG-01	VWA7	ENST00000375688.4,ENST00000375686.3	chr6	31733813:31733834:31734021:31734161:31734239:31734541,	31734022	31734161	31734142	31734142	Frame_Shift_Del	A	-	p.F735fs
LIHC	TCGA-DD-A1EG-01	VARS	ENST00000482996.1,ENST00000428445.1,ENST00000375663.3	chr6	31748795:31748900:31749257:31749383:31749467:31749538,	31749258	31749383	31749357	31749357	Frame_Shift_Del	G	-	p.P815fs
LIHC	TCGA-DD-A1EG-01	NEU1	ENST00000375631.4,ENST00000480384.1,ENST00000491768.1	chr6	31828215:31828398:31828964:31829227:31829775:31829968,	31828965	31829227	31829178	31829178	Frame_Shift_Del	G	-	p.P134fs
LIHC	TCGA-DD-A1EG-01	SLC44A4	ENST00000544672.1,ENST00000414427.1,ENST00000229729.6	chr6	31842236:31842297:31842497:31842623:31842705:31842805,	31842498	31842623	31842535	31842535	Frame_Shift_Del	T	-	p.N68fs
LIHC	TCGA-DD-A1EG-01	SKIV2L	ENST00000461073.1,ENST00000375394.2,ENST00000465703.1,ENST00000488648.1	chr6	31927996:31928114:31928208:31928323:31928442:31928517,	31928209	31928323	31928311	31928311	Frame_Shift_Del	C	-	p.P153fs
LIHC	TCGA-DD-A1EG-01	SKIV2L	ENST00000375394.2,ENST00000470453.1,ENST00000474839.1,ENST00000491994.1,ENST00000483553.1,ENST00000544581.1	chr6	31936462:31936573:31936647:31936866:31937056:31937093,	31936648	31936866	31936680	31936680	Frame_Shift_Del	G	-	p.A1071fs
LIHC	TCGA-DD-A1EG-01	STK19	ENST00000473983.1	chr6	31946679:31946775:31947190:31948325:31948430:31948501,	31947191	31948325	31947266	31947266	Frame_Shift_Del	G	-	p.G247fs
LIHC	TCGA-DD-A1EG-01	STK19	ENST00000492583.1,ENST00000375333.2	chr6	31946682:31946775:31947190:31947330:31948227:31948325,31946679:31946787:31947190:31947330:31948227:31948325,	31947191	31947330	31947266	31947266	Frame_Shift_Del	G	-	p.G247fs
LIHC	TCGA-DD-A1EG-01	C4B	ENST00000425700.2,ENST00000435363.2	chr6	31994430:31994501:31994759:31994899:31995012:31995222,	31994760	31994899	31994888	31994888	Frame_Shift_Del	A	-	p.K861fs
LIHC	TCGA-DD-A1EG-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32017774:32018098:32020446:32020770:32021164:32021482,	32020447	32020770	32020582	32020582	Frame_Shift_Del	G	-	p.Q2994fs
LIHC	TCGA-DD-A1EG-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32037329:32037638:32037903:32038191:32039766:32040075,	32037904	32038191	32038165	32038165	Frame_Shift_Del	C	-	p.A1673fs
LIHC	TCGA-DD-A1EG-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32052189:32052486:32053526:32053895:32056561:32056825,	32053527	32053895	32053659	32053659	Frame_Shift_Del	C	-	p.E1006fs
LIHC	TCGA-DD-A1EG-01	AGER	ENST00000438221.2,ENST00000375076.4,ENST00000375070.3,ENST00000375067.3,ENST00000375055.2,ENST00000375069.3,ENST00000484849.1	chr6	32150344:32150475:32150617:32150800:32150890:32150978,	32150618	32150800	32150702	32150702	Frame_Shift_Del	G	-	p.R203fs
LIHC	TCGA-DD-A1EG-01	NOTCH4	ENST00000375023.3,ENST00000474612.1	chr6	32166434:32166507:32166702:32166922:32168607:32168783,	32166703	32166922	32166916	32166916	Frame_Shift_Del	G	-	p.P1441fs
LIHC	TCGA-DD-A1EG-01	NOTCH4	ENST00000375023.3	chr6	32169188:32169277:32169852:32170376:32171546:32171659,	32169853	32170376	32170291	32170291	Frame_Shift_Del	G	-	p.P1106fs
LIHC	TCGA-DD-A1EG-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549475	32549475	Frame_Shift_Del	T	-	p.M171fs
LIHC	TCGA-DD-A1EG-01	PSMB9	ENST00000374859.2,ENST00000395330.1	chr6	32825781:32825911:32826140:32826282:32827181:32827362,	32826141	32826282	32826161	32826161	Frame_Shift_Del	A	-	p.G114fs
LIHC	TCGA-DD-A1EG-01	COL11A2	ENST00000357486.1,ENST00000374708.4,ENST00000374713.1,ENST00000374712.1,ENST00000341947.2,ENST00000395197.1,ENST00000361917.1,ENST00000374714.1	chr6	33140065:33140155:33140306:33140414:33140836:33140890,	33140307	33140414	33140319	33140319	Frame_Shift_Del	T	-	p.K962fs
LIHC	TCGA-DD-A1EG-01	RXRB	ENST00000374685.4,ENST00000374680.3,ENST00000483281.1,ENST00000544186.1	chr6	33163346:33163479:33163683:33163813:33164210:33164383,	33163684	33163813	33163772	33163772	Frame_Shift_Del	T	-	p.K345fs
LIHC	TCGA-DD-A1EG-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169374	33169374	Frame_Shift_Del	G	-	p.G118fs
LIHC	TCGA-DD-A1EG-01	HSD17B8	ENST00000374662.3,ENST00000469186.1	chr6	33173416:33173502:33173604:33173689:33173910:33173953,	33173605	33173689	33173651	33173651	Frame_Shift_Del	C	-	p.P205fs
LIHC	TCGA-DD-A1EG-01	RPS18	ENST00000474626.1	chr6	33243573:33243660:33243741:33244044:33244167:33244282,	33243742	33244044	33243784	33243784	Frame_Shift_Del	A	-	p.K78fs
LIHC	TCGA-DD-A1EG-01	RPS18	ENST00000490191.1,ENST00000474973.1,ENST00000439602.2,ENST00000476222.1,ENST00000496813.1	chr6	33243573:33243660:33243741:33243843:33243952:33244044,	33243742	33243843	33243784	33243784	Frame_Shift_Del	A	-	p.K78fs
LIHC	TCGA-DD-A1EG-01	RGL2	ENST00000437840.2,ENST00000497454.1,ENST00000491168.1,ENST00000476616.1	chr6	33260871:33261083:33261189:33261301:33261380:33261476,	33261190	33261301	33261212	33261212	Frame_Shift_Del	G	-	p.P565fs
LIHC	TCGA-DD-A1EG-01	RGL2	ENST00000497454.1	chr6	33264808:33264892:33266231:33266428:33266646:33266701,	33266232	33266428	33266372	33266372	Frame_Shift_Del	G	-	p.L6fs
LIHC	TCGA-DD-A1EG-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33289130	33289130	Frame_Shift_Del	T	-	p.K142fs
LIHC	TCGA-DD-A1EG-01	PHF1	ENST00000487667.1	chr6	33382512:33382606:33382731:33382858:33383037:33383106,	33382732	33382858	33382843	33382843	Frame_Shift_Del	G	-	p.L387fs
LIHC	TCGA-DD-A1EG-01	PHF1	ENST00000374516.3	chr6	33382512:33382606:33382731:33382921:33383011:33383106,	33382732	33382921	33382843	33382843	Frame_Shift_Del	G	-	p.L387fs
LIHC	TCGA-DD-A1EG-01	PHF1	ENST00000374512.3	chr6	33382512:33382606:33382742:33382921:33383011:33383106,33382512:33382606:33382742:33382921:33383366:33383447,	33382743	33382921	33382843	33382843	Frame_Shift_Del	G	-	p.L387fs
LIHC	TCGA-DD-A1EG-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33653829:33654030:33654185:33654296:33654785:33654881,	33654186	33654296	33654254	33654254	Frame_Shift_Del	C	-	p.S1979fs
LIHC	TCGA-DD-A1EG-01	HMGA1	ENST00000311487.5,ENST00000447654.1,ENST00000395004.3	chr6	34204980:34205094:34208513:34208692:34210488:34210555,	34208514	34208692	34208593	34208593	Frame_Shift_Del	G	-	p.L12fs
LIHC	TCGA-DD-A1EG-01	HMGA1	ENST00000401473.3,ENST00000478214.1	chr6	34204980:34205094:34208513:34208659:34210488:34210555,	34208514	34208659	34208593	34208593	Frame_Shift_Del	G	-	p.L12fs
LIHC	TCGA-DD-A1EG-01	SPDEF	ENST00000544425.1	chr6	34505767:34506229:34507026:34507173:34507291:34507339,34505767:34506229:34507026:34507173:34508760:34508958,	34507027	34507173	34507069	34507069	Frame_Shift_Del	G	-	p.H263fs
LIHC	TCGA-DD-A1EG-01	SPDEF	ENST00000374037.3	chr6	34507026:34507173:34507291:34507339:34508760:34508851,	34507292	34507339	34507307	34507307	Frame_Shift_Del	C	-	p.A223fs
LIHC	TCGA-DD-A1EG-01	SPDEF	ENST00000544425.1	chr6	34508760:34508958:34511796:34512261:34523705:34523843,	34511797	34512261	34512000	34512000	Frame_Shift_Del	G	-	p.P78fs
LIHC	TCGA-DD-A1EG-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34835242:34835393:34838630:34838893:34839360:34839469,	34838631	34838893	34838727	34838727	Frame_Shift_Del	C	-	p.S1272fs
LIHC	TCGA-DD-A1EG-01	UHRF1BP1	ENST00000192788.5	chr6	34839360:34839469:34839595:34839702:34840089:34845291,	34839596	34839702	34839649	34839649	Frame_Shift_Del	C	-	p.P1383fs
LIHC	TCGA-DD-A1EG-01	TCP11	ENST00000444780.2,ENST00000412155.2,ENST00000507706.1,ENST00000418521.2,ENST00000512012.1,ENST00000373974.4,ENST00000311875.5,ENST00000504758.1,ENST00000505911.1,ENST00000505400.1	chr6	35090085:35090114:35096838:35096959:35108981:35109030,35090085:35090114:35096838:35096959:35108523:35108661,35090085:35090114:35096838:35096959:35107796:35108002,35090085:35090114:35096838:35096959:35103883:35103980,	35096839	35096959	35096946	35096946	Frame_Shift_Del	C	-	p.V97fs
LIHC	TCGA-DD-A1EG-01	TCP11	ENST00000445851.2,ENST00000512012.1,ENST00000311875.5,ENST00000394696.4	chr6	35096891:35096959:35103883:35103995:35107796:35108002,35096891:35096959:35103883:35103995:35108981:35109030,35096891:35096959:35103883:35103995:35108523:35108661,	35103884	35103995	35103931	35103931	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A1EG-01	TCP11	ENST00000444780.2,ENST00000510465.1	chr6	35096891:35096959:35103883:35103980:35107796:35108002,35096891:35096959:35103883:35103980:35108523:35108661,	35103884	35103980	35103931	35103931	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A1EG-01	DEF6	ENST00000316637.5	chr6	35277514:35277587:35278235:35278421:35280078:35280315,	35278236	35278421	35278323	35278323	Frame_Shift_Del	G	-	p.G109fs
LIHC	TCGA-DD-A1EG-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000478340.1,ENST00000467020.1,ENST00000464112.1	chr6	35437212:35437306:35437955:35438128:35438356:35438417,	35437956	35438128	35437992	35437992	Frame_Shift_Del	T	-	p.L116fs
LIHC	TCGA-DD-A1EG-01	TEAD3	ENST00000402886.3,ENST00000433586.1,ENST00000338863.7	chr6	35443459:35443483:35443695:35443869:35444078:35444212,	35443696	35443869	35443760	35443760	Frame_Shift_Del	T	-	p.K279fs
LIHC	TCGA-DD-A1EG-01	TEAD3	ENST00000402886.3,ENST00000433586.1,ENST00000338863.7	chr6	35443459:35443483:35443695:35443869:35444078:35444212,	35443696	35443869	35443809	35443809	Frame_Shift_Del	G	-	p.L263fs
LIHC	TCGA-DD-A1EG-01	FKBP5	ENST00000540787.1,ENST00000539068.1,ENST00000357266.4,ENST00000536438.1	chr6	35544770:35545010:35547812:35547998:35554810:35554894,	35547813	35547998	35547894	35547894	Frame_Shift_Del	A	-	p.F315fs
LIHC	TCGA-DD-A1EG-01	CLPSL2	ENST00000360454.2	chr6	35744395:35744479:35745235:35745358:35747131:35747329,35744395:35744479:35745235:35745358:35745627:35745706,	35745236	35745358	35745353	35745353	Frame_Shift_Del	C	-	p.P68fs
LIHC	TCGA-DD-A1EG-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000373822.1,ENST00000423325.2,ENST00000346162.6,ENST00000510290.1	chr6	35837443:35837678:35838057:35838271:35838710:35838732,	35838058	35838271	35838062	35838062	Frame_Shift_Del	T	-	p.K329fs
LIHC	TCGA-DD-A1EG-01	SRSF3	ENST00000373715.6	chr6	36564537:36564745:36566625:36566760:36568928:36568967,	36566626	36566760	36566670	36566670	Frame_Shift_Del	A	-	p.E84fs
LIHC	TCGA-DD-A1EG-01	C6orf89	ENST00000510325.2,ENST00000480824.2,ENST00000355190.3,ENST00000373685.1,ENST00000359359.2	chr6	36882329:36882469:36884220:36884350:36887353:36887477,	36884221	36884350	36884268	36884268	Frame_Shift_Del	T	-	p.V248fs
LIHC	TCGA-DD-A1EG-01	MTCH1	ENST00000373616.5,ENST00000471737.1,ENST00000373627.5,ENST00000418541.2	chr6	36936687:36936750:36937814:36937890:36938181:36938249,	36937815	36937890	36937870	36937870	Frame_Shift_Del	G	-	p.P348fs
LIHC	TCGA-DD-A1EG-01	MTCH1	ENST00000373627.5	chr6	36938422:36938470:36940427:36940572:36943433:36943493,	36940428	36940572	36940458	36940458	Frame_Shift_Del	C	-	p.G292fs
LIHC	TCGA-DD-A1EG-01	MTCH1	ENST00000538808.1	chr6	36945853:36945931:36946280:36946387:36953628:36953833,	36946281	36946387	36946294	36946294	Frame_Shift_Del	C	-	p.G167fs
LIHC	TCGA-DD-A1EG-01	DNAH8	ENST00000359357.3	chr6	38691112:38691247:38702249:38702401:38704842:38705032,	38702250	38702401	38702348	38702348	Frame_Shift_Del	T	-	p.F21fs
LIHC	TCGA-DD-A1EG-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38743529:38743727:38746163:38746240:38747741:38747841,	38746164	38746240	38746193	38746193	Frame_Shift_Del	T	-	p.S447fs
LIHC	TCGA-DD-A1EG-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38830055:38830234:38831648:38831836:38834366:38834453,	38831649	38831836	38831778	38831778	Frame_Shift_Del	T	-	p.I1930fs
LIHC	TCGA-DD-A1EG-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38841011:38841152:38843366:38843604:38850685:38850828,	38843367	38843604	38843394	38843394	Frame_Shift_Del	C	-	p.P2333fs
LIHC	TCGA-DD-A1EG-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3	chr6	38941436:38941589:38942149:38942305:38950121:38950238,	38942150	38942305	38942201	38942201	Frame_Shift_Del	A	-	p.K4027fs
LIHC	TCGA-DD-A1EG-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3	chr6	38941436:38941589:38942149:38942305:38950121:38950238,	38942150	38942305	38942252	38942252	Frame_Shift_Del	C	-	p.P4044fs
LIHC	TCGA-DD-A1EG-01	DAAM2	ENST00000538976.1,ENST00000398904.2,ENST00000274867.4	chr6	39846179:39846364:39846953:39847253:39851737:39851845,	39846954	39847253	39847248	39847248	Frame_Shift_Del	A	-	p.N614fs
LIHC	TCGA-DD-A1EG-01	TSPO2	ENST00000373161.1,ENST00000470917.1	chr6	41010704:41010897:41011295:41011437:41011678:41011951,	41011296	41011437	41011330	41011330	Frame_Shift_Del	G	-	p.G71fs
LIHC	TCGA-DD-A1EG-01	TREML1	ENST00000426005.2	chr6	41119019:41119122:41121495:41121828:41121983:41122070,	41121496	41121828	41121528	41121528	Frame_Shift_Del	A	-	p.L115fs
LIHC	TCGA-DD-A1EG-01	TREM2	ENST00000373122.4	chr6	41126244:41126518:41126610:41126844:41127529:41127620,	41126611	41126844	41126780	41126780	Frame_Shift_Del	G	-	p.P169fs
LIHC	TCGA-DD-A1EG-01	TREM2	ENST00000373113.3	chr6	41126244:41126518:41126610:41126804:41127529:41127620,	41126611	41126804	41126780	41126780	Frame_Shift_Del	G	-	p.P169fs
LIHC	TCGA-DD-A1EG-01	FOXP4	ENST00000373060.1,ENST00000409208.1,ENST00000307972.4,ENST00000373063.3,ENST00000373057.3	chr6	41562607:41562729:41564913:41564980:41565518:41565688,	41564914	41564980	41564922	41564922	Frame_Shift_Del	C	-	p.T556fs
LIHC	TCGA-DD-A1EG-01	MDFI	ENST00000419164.1,ENST00000373051.2,ENST00000230321.6,ENST00000432027.1	chr6	41613991:41614046:41617356:41617581:41621056:41621182,	41617357	41617581	41617415	41617415	Frame_Shift_Del	C	-	p.H45fs
LIHC	TCGA-DD-A1EG-01	PGC	ENST00000356667.4	chr6	41710212:41710227:41712395:41712546:41715013:41715133,	41712396	41712546	41712485	41712485	Frame_Shift_Del	C	-	p.E41fs
LIHC	TCGA-DD-A1EG-01	FRS3	ENST00000259748.2,ENST00000373018.3,ENST00000422888.1	chr6	41743300:41743343:41744659:41744748:41745770:41745914,	41744660	41744748	41744672	41744672	Frame_Shift_Del	G	-	p.P18fs
LIHC	TCGA-DD-A1EG-01	TAF8	ENST00000372982.4,ENST00000494547.1,ENST00000465926.1,ENST00000456846.2,ENST00000372977.3	chr6	42023689:42023752:42025126:42025251:42034049:42034197,	42025127	42025251	42025228	42025228	Frame_Shift_Del	C	-	p.P156fs
LIHC	TCGA-DD-A1EG-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42075170	42075170	Frame_Shift_Del	C	-	p.G160fs
LIHC	TCGA-DD-A1EG-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42075198	42075198	Frame_Shift_Del	G	-	p.P151fs
LIHC	TCGA-DD-A1EG-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42075219	42075219	Frame_Shift_Del	G	-	p.P144fs
LIHC	TCGA-DD-A1EG-01	TRERF1	ENST00000340840.2,ENST00000372917.4	chr6	42200418:42200630:42203942:42204149:42210985:42211099,42200418:42200666:42203942:42204149:42210985:42211099,	42203943	42204149	42204030	42204030	Frame_Shift_Del	G	-	p.P1013fs
LIHC	TCGA-DD-A1EG-01	UBR2	ENST00000372899.1,ENST00000372901.1,ENST00000372903.2	chr6	42579908:42580029:42582808:42582916:42583739:42583828,	42582809	42582916	42582863	42582863	Frame_Shift_Del	A	-	p.E347fs
LIHC	TCGA-DD-A1EG-01	UBR2	ENST00000372883.3,ENST00000372899.1,ENST00000372901.1	chr6	42615855:42615908:42618021:42618124:42619760:42619809,	42618022	42618124	42618074	42618074	Frame_Shift_Del	A	-	p.K839fs
LIHC	TCGA-DD-A1EG-01	PEX6	ENST00000244546.4	chr6	42941740:42941824:42942612:42942776:42946006:42946888,	42942613	42942776	42942671	42942671	Frame_Shift_Del	G	-	p.H330fs
LIHC	TCGA-DD-A1EG-01	PPP2R5D	ENST00000485511.1,ENST00000230402.6,ENST00000470467.1,ENST00000461010.1,ENST00000394110.3,ENST00000472118.1	chr6	42978401:42978474:42978618:42978735:42978886:42979065,	42978619	42978735	42978649	42978649	Frame_Shift_Del	C	-	p.P530fs
LIHC	TCGA-DD-A1EG-01	KLHDC3	ENST00000326974.4,ENST00000332245.8,ENST00000244670.8	chr6	42985882:42985954:42986080:42986294:42986370:42986457,	42986081	42986294	42986147	42986147	Frame_Shift_Del	G	-	p.G197fs
LIHC	TCGA-DD-A1EG-01	RRP36	ENST00000244496.5	chr6	42992722:42992870:42993000:42993067:42993774:42993879,	42993001	42993067	42993062	42993062	Frame_Shift_Del	A	-	p.K115fs
LIHC	TCGA-DD-A1EG-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43012489:43012623:43012964:43013140:43013324:43013420,	43012965	43013140	43013114	43013114	Frame_Shift_Del	C	-	p.G1047fs
LIHC	TCGA-DD-A1EG-01	PTK7	ENST00000230418.4,ENST00000481273.1,ENST00000349241.2,ENST00000230419.4,ENST00000345201.2,ENST00000470019.1	chr6	43109668:43109779:43111154:43111358:43112188:43112344,43109925:43110037:43111154:43111358:43112188:43112344,	43111155	43111358	43111196	43111196	Frame_Shift_Del	C	-	p.P698fs
LIHC	TCGA-DD-A1EG-01	CUL9	ENST00000354495.3,ENST00000451399.1,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43152039:43152643:43153193:43153348:43153692:43154193,	43153194	43153348	43153255	43153255	Frame_Shift_Del	T	-	p.D219fs
LIHC	TCGA-DD-A1EG-01	CUL9	ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43153692:43154193:43154697:43154833:43154983:43155177,	43154698	43154833	43154805	43154805	Frame_Shift_Del	G	-	p.K453fs
LIHC	TCGA-DD-A1EG-01	ABCC10	ENST00000372530.4	chr6	43395291:43395495:43395705:43395877:43399879:43399914,	43395706	43395877	43395733	43395733	Frame_Shift_Del	C	-	p.A6fs
LIHC	TCGA-DD-A1EG-01	RSPH9	ENST00000372163.4	chr6	43612782:43613062:43618111:43618277:43623298:43623428,	43618112	43618277	43618196	43618196	Frame_Shift_Del	G	-	p.M104fs
LIHC	TCGA-DD-A1EG-01	TMEM63B	ENST00000532634.1,ENST00000323267.6	chr6	44095375:44095415:44102297:44102480:44102753:44102833,	44102298	44102480	44102375	44102375	Frame_Shift_Del	C	-	p.N18fs
LIHC	TCGA-DD-A1EG-01	TMEM63B	ENST00000534326.1	chr6	44095375:44095415:44102156:44102480:44102753:44102833,	44102157	44102480	44102375	44102375	Frame_Shift_Del	C	-	p.N18fs
LIHC	TCGA-DD-A1EG-01	TMEM63B	ENST00000532634.1,ENST00000371893.2,ENST00000525873.1,ENST00000323267.6,ENST00000525294.1,ENST00000534326.1,ENST00000259746.9	chr6	44106216:44106254:44107203:44107346:44107444:44107496,	44107204	44107346	44107291	44107291	Frame_Shift_Del	G	-	p.V165fs
LIHC	TCGA-DD-A1EG-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44217757:44217891:44218027:44218336:44218784:44218950,	44218028	44218336	44218079	44218079	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-DD-A1EG-01	SUPT3H	ENST00000475057.1,ENST00000306867.5,ENST00000371459.1,ENST00000371460.1,ENST00000371461.2	chr6	44921046:44921154:44922231:44922344:44929489:44929565,	44922232	44922344	44922325	44922325	Frame_Shift_Del	A	-	p.F211fs
LIHC	TCGA-DD-A1EG-01	CYP39A1	ENST00000275016.2	chr6	46554813:46554902:46555770:46555866:46563723:46563857,	46555771	46555866	46555795	46555795	Frame_Shift_Del	A	-	p.F379fs
LIHC	TCGA-DD-A1EG-01	PLA2G7	ENST00000538237.1,ENST00000541026.1,ENST00000274793.7,ENST00000537365.1	chr6	46678281:46678395:46679232:46679356:46680005:46680074,	46679233	46679356	46679304	46679304	Frame_Shift_Del	T	-	p.I198fs
LIHC	TCGA-DD-A1EG-01	PLA2G7	ENST00000538237.1,ENST00000274793.7,ENST00000537365.1	chr6	46682196:46682290:46684120:46684265:46684711:46684833,	46684121	46684265	46684201	46684201	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-DD-A1EG-01	CRISP1	ENST00000505118.1,ENST00000335847.4,ENST00000355791.2	chr6	49802575:49803156:49806149:49806238:49808610:49808708,	49806150	49806238	49806191	49806191	Frame_Shift_Del	G	-	p.P194fs
LIHC	TCGA-DD-A1EG-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51524405	51524405	Frame_Shift_Del	G	-	p.H3507fs
LIHC	TCGA-DD-A1EG-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51656033:51656171:51695658:51695787:51701201:51701267,	51695659	51695787	51695740	51695740	Frame_Shift_Del	T	-	p.T2741fs
LIHC	TCGA-DD-A1EG-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51695658:51695787:51701201:51701267:51712572:51712632,	51701202	51701267	51701213	51701213	Frame_Shift_Del	G	-	p.P2721fs
LIHC	TCGA-DD-A1EG-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51875106:51875257:51882207:51882427:51887598:51887742,	51882208	51882427	51882346	51882346	Frame_Shift_Del	A	-	p.L1821fs
LIHC	TCGA-DD-A1EG-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51913289:51913417:51914954:51915093:51917873:51918049,	51914955	51915093	51915057	51915057	Frame_Shift_Del	C	-	p.G726fs
LIHC	TCGA-DD-A1EG-01	EFHC1	ENST00000480623.1,ENST00000371068.5,ENST00000538167.1	chr6	52288743:52288965:52303101:52303389:52317485:52317635,	52303102	52303389	52303367	52303367	Frame_Shift_Del	T	-	p.V184fs
LIHC	TCGA-DD-A1EG-01	EFHC1	ENST00000480623.1,ENST00000433625.2,ENST00000371068.5,ENST00000538167.1	chr6	52329692:52329913:52334130:52334271:52343834:52344048,	52334131	52334271	52334151	52334151	Frame_Shift_Del	T	-	p.G386fs
LIHC	TCGA-DD-A1EG-01	GSTA4	ENST00000541324.1	chr6	52849261:52849403:52850273:52850381:52858954:52859055,	52850274	52850381	52850353	52850353	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-DD-A1EG-01	GSTA4	ENST00000370963.4,ENST00000370959.1	chr6	52849261:52849403:52850248:52850381:52852154:52852206,	52850249	52850381	52850353	52850353	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-DD-A1EG-01	GSTA4	ENST00000477599.1	chr6	52850329:52850381:52852154:52852206:52858954:52859059,52849261:52849403:52852154:52852206:52858954:52859055,	52852155	52852206	52852180	52852180	Frame_Shift_Del	T	-	p.K38fs
LIHC	TCGA-DD-A1EG-01	ELOVL5	ENST00000304434.6,ENST00000542638.1	chr6	53140976:53141054:53156573:53156761:53160439:53160505,	53156574	53156761	53156631	53156631	Frame_Shift_Del	C	-	p.G63fs
LIHC	TCGA-DD-A1EG-01	GCLC	ENST00000229416.6,ENST00000513939.1,ENST00000514004.1	chr6	53385575:53385758:53387212:53387325:53409293:53409406,	53387213	53387325	53387229	53387229	Frame_Shift_Del	C	-	p.E83fs
LIHC	TCGA-DD-A1EG-01	LRRC1	ENST00000370888.1,ENST00000370882.1,ENST00000487251.1	chr6	53659887:53660213:53706907:53707025:53743790:53743869,	53706908	53707025	53707021	53707021	Frame_Shift_Del	A	-	p.R91fs
LIHC	TCGA-DD-A1EG-01	LRRC1	ENST00000370888.1	chr6	53778651:53778767:53784295:53784468:53785422:53785546,	53784296	53784468	53784418	53784418	Frame_Shift_Del	T	-	p.I410fs
LIHC	TCGA-DD-A1EG-01	MLIP	ENST00000274897.5,ENST00000447836.2	chr6	54001512:54003084:54013853:54013925:54025164:54025230,53989270:53989663:54013853:54013925:54025164:54025230,	54013854	54013925	54013912	54013912	Frame_Shift_Del	T	-	p.L749fs
LIHC	TCGA-DD-A1EG-01	TINAG	ENST00000259782.4	chr6	54208023:54208147:54212164:54212315:54214513:54214694,	54212165	54212315	54212222	54212222	Frame_Shift_Del	C	-	p.S269fs
LIHC	TCGA-DD-A1EG-01	HMGCLL1	ENST00000370850.2	chr6	55304231:55304357:55360216:55360405:55406526:55406634,	55360217	55360405	55360380	55360380	Frame_Shift_Del	C	-	p.G241fs
LIHC	TCGA-DD-A1EG-01	BMP5	ENST00000370830.3	chr6	55620357:55620480:55623802:55623913:55625254:55625331,	55623803	55623913	55623837	55623837	Frame_Shift_Del	A	-	p.M394fs
LIHC	TCGA-DD-A1EG-01	BMP5	ENST00000446683.2	chr6	55620357:55620480:55625254:55625331:55638846:55639041,	55625255	55625331	55625309	55625309	Frame_Shift_Del	T	-	p.K350fs
LIHC	TCGA-DD-A1EG-01	BMP5	ENST00000370830.3,ENST00000446683.2	chr6	55638846:55639041:55659076:55659225:55684452:55684645,	55659077	55659225	55659119	55659119	Frame_Shift_Del	G	-	p.Q264fs
LIHC	TCGA-DD-A1EG-01	COL21A1	ENST00000535941.1,ENST00000370819.1,ENST00000244728.5,ENST00000370808.2,ENST00000467045.1,ENST00000488912.1	chr6	55929375:55929420:55932092:55932128:55933843:55933915,	55932093	55932128	55932125	55932125	Frame_Shift_Del	C	-	p.D699fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000312431.6,ENST00000244364.6,ENST00000361203.3,ENST00000370788.2	chr6	56330875:56330993:56333779:56333797:56334680:56334754,	56333780	56333797	56333787	56333787	Frame_Shift_Del	C	-	p.G7201fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56468948	56468948	Frame_Shift_Del	A	-	p.F3460fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469317	56469317	Frame_Shift_Del	G	-	p.P3337fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469414	56469414	Frame_Shift_Del	G	-	p.Q3305fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469583	56469583	Frame_Shift_Del	T	-	p.E3248fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470003	56470003	Frame_Shift_Del	A	-	p.F3108fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470093	56470093	Frame_Shift_Del	T	-	p.K3078fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470629	56470629	Frame_Shift_Del	T	-	p.T2900fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470874	56470874	Frame_Shift_Del	T	-	p.N2818fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471803	56471803	Frame_Shift_Del	A	-	p.F2508fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473672	56473672	Frame_Shift_Del	T	-	p.K1885fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473704	56473704	Frame_Shift_Del	A	-	p.S1875fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483287	56483287	Frame_Shift_Del	T	-	p.M1849fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484643	56484643	Frame_Shift_Del	T	-	p.T1397fs
LIHC	TCGA-DD-A1EG-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56485150	56485150	Frame_Shift_Del	T	-	p.R1228fs
LIHC	TCGA-DD-A1EG-01	BEND6	ENST00000370746.3	chr6	56857175:56857353:56879930:56880151:56882004:56882197,	56879931	56880151	56879949	56879949	Frame_Shift_Del	C	-	p.H127fs
LIHC	TCGA-DD-A1EG-01	ZNF451	ENST00000491832.2,ENST00000370706.4	chr6	57011887:57013491:57015516:57015660:57017018:57017149,	57015517	57015660	57015523	57015523	Frame_Shift_Del	A	-	p.E872fs
LIHC	TCGA-DD-A1EG-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395081	64395081	Frame_Shift_Del	A	-	p.V486fs
LIHC	TCGA-DD-A1EG-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395267	64395267	Frame_Shift_Del	A	-	p.R548fs
LIHC	TCGA-DD-A1EG-01	PHF3	ENST00000515594.1,ENST00000509876.1,ENST00000393387.1,ENST00000506783.1,ENST00000262043.3	chr6	64415918:64416114:64416618:64416766:64419046:64419110,	64416619	64416766	64416716	64416716	Frame_Shift_Del	T	-	p.F1221fs
LIHC	TCGA-DD-A1EG-01	EYS	ENST00000503581.1,ENST00000398580.3,ENST00000370616.2,ENST00000370621.3	chr6	64472353:64472526:64487898:64488073:64497997:64498142,	64487899	64488073	64487963	64487963	Frame_Shift_Del	A	-	p.S2612fs
LIHC	TCGA-DD-A1EG-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000361499.3	chr6	71232215:71232289:71233669:71233824:71234045:71234302,71232215:71232289:71233669:71233824:71234633:71234894,	71233670	71233824	71233704	71233704	Frame_Shift_Del	A	-	p.K380fs
LIHC	TCGA-DD-A1EG-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71234168	71234168	Frame_Shift_Del	C	-	p.P461fs
LIHC	TCGA-DD-A1EG-01	FAM135A	ENST00000418814.2,ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000505868.1,ENST00000361499.3	chr6	71245962:71246114:71247993:71248104:71266452:71266566,	71247994	71248104	71248017	71248017	Frame_Shift_Del	A	-	p.K1382fs
LIHC	TCGA-DD-A1EG-01	FAM135A	ENST00000418814.2,ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000505868.1,ENST00000361499.3	chr6	71245962:71246114:71247993:71248104:71266452:71266566,	71247994	71248104	71248076	71248076	Frame_Shift_Del	T	-	p.T1400fs
LIHC	TCGA-DD-A1EG-01	KCNQ5	ENST00000414165.2,ENST00000403813.2,ENST00000370398.1,ENST00000355635.3,ENST00000370392.1,ENST00000402622.2	chr6	73331917:73332315:73713630:73713721:73751658:73751785,	73713631	73713721	73713691	73713691	Frame_Shift_Del	A	-	p.T153fs
LIHC	TCGA-DD-A1EG-01	CD109	ENST00000437994.2,ENST00000287097.5	chr6	74432973:74433002:74440066:74440297:74446105:74446231,	74440067	74440297	74440131	74440131	Frame_Shift_Del	T	-	p.I114fs
LIHC	TCGA-DD-A1EG-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797406	75797406	Frame_Shift_Del	G	-	p.P3023fs
LIHC	TCGA-DD-A1EG-01	COL12A1	ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75875222:75875495:75884753:75885026:75887378:75887651,	75884754	75885026	75884903	75884903	Frame_Shift_Del	C	-	p.G854fs
LIHC	TCGA-DD-A1EG-01	COL12A1	ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75875222:75875495:75884753:75885026:75887378:75887651,	75884754	75885026	75884955	75884955	Frame_Shift_Del	C	-	p.A837fs
LIHC	TCGA-DD-A1EG-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412762	76412762	Frame_Shift_Del	A	-	p.E897fs
LIHC	TCGA-DD-A1EG-01	MYO6	ENST00000369977.3,ENST00000369981.3	chr6	76604962:76604977:76608089:76608128:76617321:76617425,	76608090	76608128	76608095	76608095	Frame_Shift_Del	A	-	p.Q1058fs
LIHC	TCGA-DD-A1EG-01	PHIP	ENST00000479165.1,ENST00000275034.4	chr6	79656427:79656591:79657339:79657492:79664530:79664680,	79657340	79657492	79657380	79657380	Frame_Shift_Del	A	-	p.F1389fs
LIHC	TCGA-DD-A1EG-01	PHIP	ENST00000479165.1,ENST00000275034.4	chr6	79656427:79656591:79657339:79657492:79664530:79664680,	79657340	79657492	79657441	79657441	Frame_Shift_Del	T	-	p.T1369fs
LIHC	TCGA-DD-A1EG-01	LCA5	ENST00000392959.1,ENST00000467898.3,ENST00000369846.4	chr6	80203329:80203467:80222928:80223458:80228421:80228802,	80222929	80223458	80223180	80223180	Frame_Shift_Del	T	-	p.I157fs
LIHC	TCGA-DD-A1EG-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80881019	80881019	Frame_Shift_Del	T	-	p.P218fs
LIHC	TCGA-DD-A1EG-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80881074	80881074	Frame_Shift_Del	T	-	p.F238fs
LIHC	TCGA-DD-A1EG-01	ME1	ENST00000541327.1,ENST00000369705.3,ENST00000543031.1	chr6	83926216:83926315:83933478:83933652:83937053:83937193,	83933479	83933652	83933620	83933620	Frame_Shift_Del	A	-	p.F436fs
LIHC	TCGA-DD-A1EG-01	NT5E	ENST00000257770.3,ENST00000369651.3	chr6	86176777:86177000:86180954:86181143:86194952:86195150,	86180955	86181143	86181127	86181127	Frame_Shift_Del	C	-	p.N245fs
LIHC	TCGA-DD-A1EG-01	NT5E	ENST00000369651.3	chr6	86200225:86200375:86201694:86201895:86203558:86205496,86199211:86199317:86201694:86201895:86203558:86205496,	86201695	86201895	86201723	86201723	Frame_Shift_Del	A	-	p.R463fs
LIHC	TCGA-DD-A1EG-01	NT5E	ENST00000369651.3	chr6	86200225:86200375:86201694:86201895:86203558:86205496,86199211:86199317:86201694:86201895:86203558:86205496,	86201695	86201895	86201796	86201796	Frame_Shift_Del	A	-	p.K488fs
LIHC	TCGA-DD-A1EG-01	SNX14	ENST00000513869.1	chr6	86267693:86267778:86275049:86275137:86281854:86281933,	86275050	86275137	86275080	86275080	Frame_Shift_Del	A	-	p.F173fs
LIHC	TCGA-DD-A1EG-01	RARS2	ENST00000369536.5	chr6	88226523:88226598:88227886:88227982:88228347:88228457,	88227887	88227982	88227933	88227933	Frame_Shift_Del	A	-	p.C489fs
LIHC	TCGA-DD-A1EG-01	ORC3	ENST00000392844.3,ENST00000257789.4	chr6	88304259:88304331:88311501:88311599:88313101:88313246,88304070:88304125:88311501:88311599:88313101:88313246,	88311502	88311599	88311522	88311522	Frame_Shift_Del	A	-	p.K34fs
LIHC	TCGA-DD-A1EG-01	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4,ENST00000417380.2	chr6	88321806:88321966:88326031:88326145:88331071:88331205,	88326032	88326145	88326056	88326056	Frame_Shift_Del	T	-	p.F300fs
LIHC	TCGA-DD-A1EG-01	PM20D2	ENST00000275072.4	chr6	89862761:89862904:89864466:89864621:89868043:89868179,	89864467	89864621	89864571	89864571	Frame_Shift_Del	A	-	p.K289fs
LIHC	TCGA-DD-A1EG-01	RRAGD	ENST00000359203.3,ENST00000369415.4	chr6	90074716:90077926:90082155:90082304:90087389:90087532,	90082156	90082304	90082217	90082217	Frame_Shift_Del	T	-	p.K330fs
LIHC	TCGA-DD-A1EG-01	MDN1	ENST00000428876.1,ENST00000369393.3	chr6	90397796:90397892:90398291:90398527:90399588:90399862,	90398292	90398527	90398457	90398457	Frame_Shift_Del	A	-	p.F3698fs
LIHC	TCGA-DD-A1EG-01	MDN1	ENST00000439638.1,ENST00000428876.1,ENST00000369393.3	chr6	90484339:90484452:90486318:90486414:90489930:90490012,	90486319	90486414	90486363	90486363	Frame_Shift_Del	T	-	p.M593fs
LIHC	TCGA-DD-A1EG-01	MANEA	ENST00000358812.4	chr6	96025418:96025514:96034277:96034859:96044612:96044722,	96034278	96034859	96034432	96034432	Frame_Shift_Del	T	-	p.P39fs
LIHC	TCGA-DD-A1EG-01	UFL1	ENST00000369278.4	chr6	96972257:96972286:96973172:96973270:96974196:96974311,	96973173	96973270	96973222	96973222	Frame_Shift_Del	T	-	p.I101fs
LIHC	TCGA-DD-A1EG-01	KLHL32	ENST00000369261.4,ENST00000536676.1,ENST00000544166.1,ENST00000539200.1	chr6	97578632:97578825:97580528:97580623:97586996:97587503,	97580529	97580623	97580572	97580572	Frame_Shift_Del	T	-	p.Y550fs
LIHC	TCGA-DD-A1EG-01	MMS22L	ENST00000369251.2,ENST00000275053.4	chr6	97627283:97627435:97629779:97629930:97634372:97634566,	97629780	97629930	97629881	97629881	Frame_Shift_Del	A	-	p.F761fs
LIHC	TCGA-DD-A1EG-01	MMS22L	ENST00000275053.4,ENST00000509383.1	chr6	97679301:97679528:97681736:97681856:97694503:97694566,	97681737	97681856	97681762	97681762	Frame_Shift_Del	A	-	p.L426fs
LIHC	TCGA-DD-A1EG-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99321600:99322317:99323290:99323603:99328428:99328500,	99323291	99323603	99323553	99323553	Frame_Shift_Del	T	-	p.K480fs
LIHC	TCGA-DD-A1EG-01	COQ3	ENST00000254759.3	chr6	99819303:99819463:99823815:99824058:99825261:99825327,	99823816	99824058	99823998	99823998	Frame_Shift_Del	T	-	p.T183fs
LIHC	TCGA-DD-A1EG-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99856028:99856147:99857048:99857220:99858616:99858840,	99857049	99857220	99857177	99857177	Frame_Shift_Del	G	-	p.P182fs
LIHC	TCGA-DD-A1EG-01	USP45	ENST00000500704.2,ENST00000369232.2,ENST00000329966.6,ENST00000369233.2	chr6	99956601:99956658:99957996:99958106:99963267:99963294,	99957997	99958106	99958073	99958073	Frame_Shift_Del	T	-	p.K8fs
LIHC	TCGA-DD-A1EG-01	ATG5	ENST00000369076.3,ENST00000369070.1,ENST00000343245.3	chr6	106696024:106696119:106727535:106727698:106740902:106740981,	106727536	106727698	106727570	106727570	Frame_Shift_Del	T	-	p.K148fs
LIHC	TCGA-DD-A1EG-01	ATG5	ENST00000369076.3,ENST00000343245.3	chr6	106740902:106740981:106756238:106756366:106763975:106764141,	106756239	106756366	106756314	106756314	Frame_Shift_Del	T	-	p.K54fs
LIHC	TCGA-DD-A1EG-01	RTN4IP1	ENST00000369063.3	chr6	107031202:107031295:107035553:107035737:107040038:107040175,	107035554	107035737	107035564	107035564	Frame_Shift_Del	T	-	p.K327fs
LIHC	TCGA-DD-A1EG-01	QRSL1	ENST00000369046.4	chr6	107100341:107100457:107102604:107102797:107103489:107103607,	107102605	107102797	107102785	107102785	Frame_Shift_Del	G	-	p.G344fs
LIHC	TCGA-DD-A1EG-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107956439	107956439	Frame_Shift_Del	G	-	p.A797fs
LIHC	TCGA-DD-A1EG-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108984701	108984701	Frame_Shift_Del	G	-	p.R222fs
LIHC	TCGA-DD-A1EG-01	AK9	ENST00000424296.2,ENST00000470564.1	chr6	109818998:109819168:109820246:109820443:109827529:109827621,	109820247	109820443	109820283	109820283	Frame_Shift_Del	C	-	p.G1670fs
LIHC	TCGA-DD-A1EG-01	AK9	ENST00000424296.2,ENST00000470564.1	chr6	109830381:109830583:109835426:109835640:109837059:109837278,	109835427	109835640	109835530	109835530	Frame_Shift_Del	T	-	p.K1392fs
LIHC	TCGA-DD-A1EG-01	FIG4	ENST00000441478.2,ENST00000230124.3,ENST00000415980.1	chr6	110087931:110088098:110098124:110098263:110106172:110106231,	110098125	110098263	110098213	110098213	Frame_Shift_Del	T	-	p.D613fs
LIHC	TCGA-DD-A1EG-01	CDK19	ENST00000323817.3,ENST00000368911.3,ENST00000457688.1,ENST00000463016.1	chr6	110988636:110988777:110991633:110991744:111067328:111067404,	110991634	110991744	110991740	110991740	Frame_Shift_Del	A	-	p.L70fs
LIHC	TCGA-DD-A1EG-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111654325:111654570:111656671:111656813:111665127:111665246,	111656672	111656813	111656734	111656734	Frame_Shift_Del	T	-	p.T2462fs
LIHC	TCGA-DD-A1EG-01	TUBE1	ENST00000605457.1,ENST00000368662.5,ENST00000368657.3	chr6	112402294:112402410:112405391:112405449:112406877:112406904,112402294:112402410:112405391:112405449:112407758:112407807,	112405392	112405449	112405412	112405412	Frame_Shift_Del	T	-	p.I64fs
LIHC	TCGA-DD-A1EG-01	RWDD1	ENST00000392526.1,ENST00000487832.2,ENST00000466444.2	chr6	116911434:116911567:116912050:116912113:116914142:116914432,	116912051	116912113	116912097	116912097	Frame_Shift_Del	C	-	p.I198fs
LIHC	TCGA-DD-A1EG-01	KPNA5	ENST00000413340.1,ENST00000368564.1,ENST00000356348.1	chr6	117013217:117013319:117013455:117013555:117019866:117019961,	117013456	117013555	117013490	117013490	Frame_Shift_Del	T	-	p.I92fs
LIHC	TCGA-DD-A1EG-01	DCBLD1	ENST00000296955.8,ENST00000338728.5,ENST00000533453.1,ENST00000368503.4	chr6	117824946:117825142:117840978:117841113:117842687:117842739,	117840979	117841113	117841005	117841005	Frame_Shift_Del	C	-	p.P118fs
LIHC	TCGA-DD-A1EG-01	GOPC	ENST00000467125.1,ENST00000052569.6,ENST00000368498.2,ENST00000535237.1	chr6	117888016:117888197:117890734:117890899:117892022:117892118,	117890735	117890899	117890812	117890812	Frame_Shift_Del	C	-	p.D334fs
LIHC	TCGA-DD-A1EG-01	FAM184A	ENST00000475529.2	chr6	119281267:119281349:119282925:119283128:119285831:119285905,119281267:119281349:119282925:119283128:119287999:119288117,119281933:119282028:119282925:119283128:119285831:119285936,	119282926	119283128	119282929	119282929	Frame_Shift_Del	A	-	p.L1113fs
LIHC	TCGA-DD-A1EG-01	FAM184A	ENST00000475529.2	chr6	119281267:119281349:119282925:119283128:119285831:119285905,119281267:119281349:119282925:119283128:119287999:119288117,119281933:119282028:119282925:119283128:119285831:119285936,	119282926	119283128	119282946	119282946	Frame_Shift_Del	T	-	p.K1107fs
LIHC	TCGA-DD-A1EG-01	FAM184A	ENST00000475529.2,ENST00000521043.1,ENST00000338891.7	chr6	119287999:119288117:119295592:119295739:119296188:119296373,	119295593	119295739	119295703	119295703	Frame_Shift_Del	T	-	p.K935fs
LIHC	TCGA-DD-A1EG-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345164	119345164	Frame_Shift_Del	T	-	p.K325fs
LIHC	TCGA-DD-A1EG-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345237	119345237	Frame_Shift_Del	T	-	p.T301fs
LIHC	TCGA-DD-A1EG-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345806	119345806	Frame_Shift_Del	A	-	p.L111fs
LIHC	TCGA-DD-A1EG-01	TRDN	ENST00000334268.4,ENST00000398178.3	chr6	123759207:123759267:123760088:123760148:123786050:123786128,	123760089	123760148	123760094	123760094	Frame_Shift_Del	T	-	p.K330fs
LIHC	TCGA-DD-A1EG-01	NKAIN2	ENST00000368416.1,ENST00000545433.1,ENST00000368417.1	chr6	124604150:124604288:124676412:124676493:124979331:124979532,	124676413	124676493	124676479	124676479	Frame_Shift_Del	G	-	p.G87fs
LIHC	TCGA-DD-A1EG-01	HDDC2	ENST00000608295.1	chr6	125598247:125598386:125619795:125619962:125621683:125621805,	125619796	125619962	125619875	125619875	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-DD-A1EG-01	HDDC2	ENST00000398153.2	chr6	125613986:125614055:125619859:125619962:125621683:125621805,	125619860	125619962	125619875	125619875	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-DD-A1EG-01	ECHDC1	ENST00000368292.6,ENST00000368287.1,ENST00000309620.9,ENST00000368291.2,ENST00000479525.2	chr6	127648155:127648289:127651953:127652175:127664105:127664491,127648155:127648289:127651953:127652175:127663500:127663552,127648155:127648289:127651953:127652175:127664480:127664493,	127651954	127652175	127652051	127652051	Frame_Shift_Del	A	-	p.L47fs
LIHC	TCGA-DD-A1EG-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150948	128150948	Frame_Shift_Del	G	-	p.L49fs
LIHC	TCGA-DD-A1EG-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826417	129826417	Frame_Shift_Del	A	-	p.K2875fs
LIHC	TCGA-DD-A1EG-01	SAMD3	ENST00000368134.2,ENST00000457563.2,ENST00000439090.2,ENST00000437477.2	chr6	130466484:130466567:130467154:130467326:130475969:130475998,	130467155	130467326	130467230	130467230	Frame_Shift_Del	A	-	p.S374fs
LIHC	TCGA-DD-A1EG-01	EPB41L2	ENST00000528282.1,ENST00000445890.2	chr6	131186675:131186774:131188598:131188721:131190951:131191266,131186675:131186774:131188598:131188721:131190702:131191266,131186675:131186774:131188598:131188721:131206235:131206408,	131188599	131188721	131188706	131188706	Frame_Shift_Del	T	-	p.T875fs
LIHC	TCGA-DD-A1EG-01	AKAP7	ENST00000368123.4,ENST00000431975.2	chr6	131520600:131520713:131540800:131540948:131602669:131603083,	131540801	131540948	131540900	131540900	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-DD-A1EG-01	ENPP3	ENST00000414305.1,ENST00000543135.1,ENST00000357639.3,ENST00000358229.5,ENST00000494023.1	chr6	131992387:131992467:131995301:131995421:131996219:131996329,	131995302	131995421	131995367	131995367	Frame_Shift_Del	T	-	p.N236fs
LIHC	TCGA-DD-A1EG-01	ENPP3	ENST00000427707.1,ENST00000427148.2	chr6	131992387:131992467:131995301:131995550:131996219:131996329,	131995302	131995550	131995367	131995367	Frame_Shift_Del	T	-	p.N236fs
LIHC	TCGA-DD-A1EG-01	VNN3	ENST00000414302.2	chr6	133046059:133046118:133047860:133048151:133049879:133050072,133046059:133046118:133047860:133048151:133055391:133055472,	133047861	133048151	133048059	133048059	Frame_Shift_Del	A	-	p.F210fs
LIHC	TCGA-DD-A1EG-01	VNN2	ENST00000525674.1	chr6	133070887:133071004:133072283:133072657:133076981:133077174,	133072284	133072657	133072540	133072540	Frame_Shift_Del	G	-	p.P315fs
LIHC	TCGA-DD-A1EG-01	VNN2	ENST00000326499.6,ENST00000525270.1	chr6	133072283:133072657:133073599:133073888:133076981:133077174,	133073600	133073888	133073800	133073800	Frame_Shift_Del	A	-	p.F209fs
LIHC	TCGA-DD-A1EG-01	SLC18B1	ENST00000275227.4	chr6	133105071:133105228:133108572:133108720:133110902:133110976,	133108573	133108720	133108659	133108659	Frame_Shift_Del	T	-	p.M139fs
LIHC	TCGA-DD-A1EG-01	BCLAF1	ENST00000529826.1,ENST00000530429.1,ENST00000527613.1,ENST00000353331.4,ENST00000530767.1,ENST00000527759.1,ENST00000392348.2,ENST00000527536.1,ENST00000531224.1,ENST00000532384.1	chr6	136594219:136594325:136596669:136596839:136596980:136597127,	136596670	136596839	136596780	136596780	Frame_Shift_Del	T	-	p.K581fs
LIHC	TCGA-DD-A1EG-01	TNFAIP3	ENST00000237289.4	chr6	138199568:138200488:138201207:138201389:138202171:138204449,	138201208	138201389	138201237	138201237	Frame_Shift_Del	C	-	p.P646fs
LIHC	TCGA-DD-A1EG-01	NHSL1	ENST00000343505.5	chr6	138754644:138754817:138763119:138763251:138768137:138768330,	138763120	138763251	138763168	138763168	Frame_Shift_Del	T	-	p.R207fs
LIHC	TCGA-DD-A1EG-01	ECT2L	ENST00000495970.1,ENST00000423192.1,ENST00000541398.1,ENST00000367682.2	chr6	139175162:139175291:139183763:139183856:139186132:139186315,	139183764	139183856	139183821	139183821	Frame_Shift_Del	C	-	p.A419fs
LIHC	TCGA-DD-A1EG-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143090778	143090778	Frame_Shift_Del	T	-	p.I1700fs
LIHC	TCGA-DD-A1EG-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091198	143091198	Frame_Shift_Del	A	-	p.S1560fs
LIHC	TCGA-DD-A1EG-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095258	143095258	Frame_Shift_Del	T	-	p.K206fs
LIHC	TCGA-DD-A1EG-01	AIG1	ENST00000367598.5,ENST00000275235.4,ENST00000494282.2,ENST00000357847.4,ENST00000367601.4	chr6	143382083:143382203:143457971:143458127:143486218:143486320,	143457972	143458127	143458122	143458122	Frame_Shift_Del	G	-	p.G98fs
LIHC	TCGA-DD-A1EG-01	EPM2A	ENST00000435470.1,ENST00000367519.3	chr6	145948623:145948829:145956380:145956622:146007257:146007282,	145956381	145956622	145956544	145956544	Frame_Shift_Del	C	-	p.G185fs
LIHC	TCGA-DD-A1EG-01	EPM2A	ENST00000435470.1,ENST00000367519.3	chr6	145956380:145956622:146007257:146007432:146056333:146056393,	146007258	146007432	146007354	146007354	Frame_Shift_Del	C	-	p.G127fs
LIHC	TCGA-DD-A1EG-01	ADGB	ENST00000397944.3,ENST00000367493.3,ENST00000326929.4	chr6	146978068:146978116:146985336:146985476:146987951:146988038,	146985337	146985476	146985375	146985375	Frame_Shift_Del	T	-	p.P217fs
LIHC	TCGA-DD-A1EG-01	SASH1	ENST00000367467.3	chr6	148789680:148789721:148792552:148792639:148795245:148795358,	148792553	148792639	148792594	148792594	Frame_Shift_Del	A	-	p.N157fs
LIHC	TCGA-DD-A1EG-01	GINM1	ENST00000367419.5	chr6	149901728:149901859:149903575:149903739:149911862:149912884,	149903576	149903739	149903654	149903654	Frame_Shift_Del	T	-	p.F266fs
LIHC	TCGA-DD-A1EG-01	PCMT1	ENST00000367384.2	chr6	150117550:150117636:150123335:150123505:150131751:150131937,	150123336	150123505	150123486	150123486	Frame_Shift_Del	A	-	p.K277fs
LIHC	TCGA-DD-A1EG-01	PCMT1	ENST00000367380.5,ENST00000544496.1,ENST00000464889.1	chr6	150117550:150117636:150123335:150123552:150131751:150131937,	150123336	150123552	150123486	150123486	Frame_Shift_Del	A	-	p.K277fs
LIHC	TCGA-DD-A1EG-01	LRP11	ENST00000546019.1,ENST00000239367.2	chr6	150147399:150147495:150157220:150157433:150158473:150158599,	150157221	150157433	150157257	150157257	Frame_Shift_Del	A	-	p.W406fs
LIHC	TCGA-DD-A1EG-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151054719:151055228:151089773:151089874:151107525:151107595,	151089774	151089874	151089838	151089838	Frame_Shift_Del	T	-	p.L159fs
LIHC	TCGA-DD-A1EG-01	MTHFD1L	ENST00000367307.4,ENST00000443074.1	chr6	151206769:151206870:151208980:151209117:151226785:151226897,151206769:151206870:151208980:151209117:151219995:151220043,	151208981	151209117	151209020	151209020	Frame_Shift_Del	C	-	p.A228fs
LIHC	TCGA-DD-A1EG-01	MTHFD1L	ENST00000367308.4	chr6	151206769:151206870:151208977:151209117:151219995:151220043,151206769:151206870:151208977:151209117:151226785:151226897,	151208978	151209117	151209020	151209020	Frame_Shift_Del	C	-	p.A228fs
LIHC	TCGA-DD-A1EG-01	CCDC170	ENST00000239374.7,ENST00000367290.5	chr6	151869438:151869624:151894308:151894626:151907023:151907224,	151894309	151894626	151894519	151894519	Frame_Shift_Del	A	-	p.K329fs
LIHC	TCGA-DD-A1EG-01	SYNE1	ENST00000367255.5,ENST00000265368.4,ENST00000471834.1	chr6	152665215:152665362:152668193:152668370:152671302:152671470,	152668194	152668370	152668269	152668269	Frame_Shift_Del	T	-	p.K4001fs
LIHC	TCGA-DD-A1EG-01	SYNE1	ENST00000367255.5,ENST00000265368.4,ENST00000448038.1,ENST00000471834.1,ENST00000423061.1	chr6	152671752:152671905:152673161:152673488:152674397:152674568,	152673162	152673488	152673379	152673379	Frame_Shift_Del	T	-	p.K3788fs
LIHC	TCGA-DD-A1EG-01	FBXO5	ENST00000367241.3,ENST00000229758.3	chr6	153293406:153293589:153294180:153294271:153296041:153296756,	153294181	153294271	153294219	153294219	Frame_Shift_Del	C	-	p.A245fs
LIHC	TCGA-DD-A1EG-01	MTRF1L	ENST00000461949.1	chr6	153310939:153311230:153312319:153312551:153313991:153314109,	153312320	153312551	153312343	153312343	Frame_Shift_Del	T	-	p.R307fs
LIHC	TCGA-DD-A1EG-01	MTRF1L	ENST00000367233.5,ENST00000464135.1,ENST00000414771.1	chr6	153310939:153311230:153312319:153312456:153313991:153314109,	153312320	153312456	153312343	153312343	Frame_Shift_Del	T	-	p.R307fs
LIHC	TCGA-DD-A1EG-01	MTRF1L	ENST00000367233.5,ENST00000367231.5	chr6	153315647:153315811:153316270:153316454:153319684:153319764,	153316271	153316454	153316292	153316292	Frame_Shift_Del	C	-	p.E168fs
LIHC	TCGA-DD-A1EG-01	MTRF1L	ENST00000485512.1,ENST00000464135.1	chr6	153315647:153315811:153316270:153316429:153319684:153319764,	153316271	153316429	153316292	153316292	Frame_Shift_Del	C	-	p.E168fs
LIHC	TCGA-DD-A1EG-01	SYNJ2	ENST00000367121.3,ENST00000367122.2,ENST00000355585.4	chr6	158492633:158492826:158495611:158495770:158497657:158497814,	158495612	158495770	158495622	158495622	Frame_Shift_Del	T	-	p.V715fs
LIHC	TCGA-DD-A1EG-01	SERAC1	ENST00000607742.1,ENST00000367104.3,ENST00000607071.1,ENST00000367101.1,ENST00000367102.2	chr6	158549139:158549302:158551404:158551518:158564087:158564216,	158551405	158551518	158551468	158551468	Frame_Shift_Del	A	-	p.F263fs
LIHC	TCGA-DD-A1EG-01	SERAC1	ENST00000607742.1,ENST00000367104.3,ENST00000607071.1,ENST00000367101.1,ENST00000367102.2	chr6	158549139:158549302:158551404:158551518:158564087:158564216,	158551405	158551518	158551473	158551473	Frame_Shift_Del	T	-	p.S262fs
LIHC	TCGA-DD-A1EG-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158922745	158922745	Frame_Shift_Del	C	-	p.P684fs
LIHC	TCGA-DD-A1EG-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923337	158923337	Frame_Shift_Del	C	-	p.T881fs
LIHC	TCGA-DD-A1EG-01	FNDC1	ENST00000329629.8,ENST00000297267.9,ENST00000340366.6	chr6	159682221:159682301:159686006:159686036:159687115:159687277,	159686007	159686036	159686030	159686030	Frame_Shift_Del	C	-	p.P1761fs
LIHC	TCGA-DD-A1EG-01	ACAT2	ENST00000367048.4,ENST00000467951.1,ENST00000541436.1	chr6	160183950:160184085:160188036:160188218:160189542:160189660,	160188037	160188218	160188134	160188134	Frame_Shift_Del	A	-	p.L96fs
LIHC	TCGA-DD-A1EG-01	PNLDC1	ENST00000392167.3,ENST00000275275.5,ENST00000610273.1	chr6	160239586:160239686:160239977:160240153:160240285:160240384,	160239978	160240153	160240047	160240047	Frame_Shift_Del	G	-	p.G432fs
LIHC	TCGA-DD-A1EG-01	IGF2R	ENST00000356956.1,ENST00000475584.1	chr6	160517478:160517657:160523550:160523703:160524777:160524847,	160523551	160523703	160523576	160523576	Frame_Shift_Del	G	-	p.G2290fs
LIHC	TCGA-DD-A1EG-01	SLC22A1	ENST00000366963.4,ENST00000539263.1	chr6	160564572:160564681:160575829:160575942:160579547:160579583,160564572:160564681:160575829:160575942:160577006:160577106,	160575830	160575942	160575883	160575883	Frame_Shift_Del	C	-	p.T480fs
LIHC	TCGA-DD-A1EG-01	LPA	ENST00000447678.1,ENST00000316300.5	chr6	160958886:160958993:160961074:160961215:160962138:160962213,	160961075	160961215	160961084	160961084	Frame_Shift_Del	T	-	p.K1909fs
LIHC	TCGA-DD-A1EG-01	PLG	ENST00000308192.9	chr6	161152776:161152925:161155026:161155120:161157918:161158039,	161155027	161155120	161155086	161155086	Frame_Shift_Del	A	-	p.R549fs
LIHC	TCGA-DD-A1EG-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469827	161469827	Frame_Shift_Del	C	-	p.P175fs
LIHC	TCGA-DD-A1EG-01	AGPAT4	ENST00000436279.1	chr6	161574377:161574531:161575180:161575342:161587279:161587449,161574377:161574531:161575180:161575342:161653067:161653268,161574377:161574531:161575180:161575342:161586608:161586745,	161575181	161575342	161575223	161575223	Frame_Shift_Del	G	-	p.A156fs
LIHC	TCGA-DD-A1EG-01	QKI	ENST00000537883.1	chr6	163899811:163899928:163956013:163956157:163983013:163983101,163876362:163876453:163956013:163956157:163983013:163983101,	163956014	163956157	163956021	163956021	Frame_Shift_Del	A	-	p.Q137fs
LIHC	TCGA-DD-A1EG-01	SFT2D1	ENST00000478705.1,ENST00000487841.1,ENST00000488773.1,ENST00000361731.3	chr6	166741763:166741845:166742994:166743077:166743648:166743735,	166742995	166743077	166743036	166743036	Frame_Shift_Del	A	-	p.F64fs
LIHC	TCGA-DD-A1EG-01	PHF10	ENST00000366780.4,ENST00000339209.4	chr6	170114828:170114938:170115803:170115953:170116050:170116184,	170115804	170115953	170115879	170115879	Frame_Shift_Del	T	-	p.K206fs
LIHC	TCGA-DD-A1EG-01	FAM20C	ENST00000313766.5	chr7	195624:195732:208897:208976:286380:286473,	208898	208976	208908	208908	Frame_Shift_Del	G	-	p.S265fs
LIHC	TCGA-DD-A1EG-01	FAM20C	ENST00000313766.5	chr7	195624:195732:208897:208976:286380:286473,	208898	208976	208951	208951	Frame_Shift_Del	G	-	p.G280fs
LIHC	TCGA-DD-A1EG-01	PRKAR1B	ENST00000417852.1	chr7	720192:720363:750965:751164:767226:767287,720192:720363:750965:751164:766846:766874,	750966	751164	751093	751093	Frame_Shift_Del	C	-	p.G17fs
LIHC	TCGA-DD-A1EG-01	ZFAND2A	ENST00000401903.1	chr7	1191706:1191980:1192708:1192860:1195088:1195220,	1192709	1192860	1192855	1192855	Frame_Shift_Del	A	-	p.F96fs
LIHC	TCGA-DD-A1EG-01	ZFAND2A	ENST00000316495.3,ENST00000401903.1	chr7	1192708:1192860:1195088:1195220:1197291:1197368,	1195089	1195220	1195168	1195168	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A1EG-01	MICALL2	ENST00000413446.1	chr7	1478560:1478631:1479560:1479721:1480226:1480320,1478475:1478627:1479560:1479721:1480226:1480320,	1479561	1479721	1479621	1479621	Frame_Shift_Del	G	-	p.L636fs
LIHC	TCGA-DD-A1EG-01	INTS1	ENST00000482994.1,ENST00000389470.4,ENST00000404767.3	chr7	1513835:1513996:1514340:1514474:1515583:1515707,	1514341	1514474	1514435	1514435	Frame_Shift_Del	C	-	p.D2052fs
LIHC	TCGA-DD-A1EG-01	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000402746.1	chr7	2054140:2054277:2108828:2108973:2188786:2188873,	2108829	2108973	2108846	2108846	Frame_Shift_Del	C	-	p.V401fs
LIHC	TCGA-DD-A1EG-01	SNX8	ENST00000494722.1	chr7	2314750:2314864:2317734:2317940:2353962:2354076,	2317735	2317940	2317812	2317812	Frame_Shift_Del	C	-	p.D75fs
LIHC	TCGA-DD-A1EG-01	IQCE	ENST00000490913.1,ENST00000476665.1,ENST00000404984.1,ENST00000325997.9,ENST00000402050.2,ENST00000438376.2,ENST00000470731.1,ENST00000325979.7	chr7	2629540:2629740:2632655:2632760:2634519:2634610,	2632656	2632760	2632754	2632754	Frame_Shift_Del	T	-	p.V448fs
LIHC	TCGA-DD-A1EG-01	SLC29A4	ENST00000396872.3,ENST00000297195.4	chr7	5331360:5331452:5334490:5334565:5336566:5336829,	5334491	5334565	5334546	5334546	Frame_Shift_Del	G	-	p.Q200fs
LIHC	TCGA-DD-A1EG-01	SLC29A4	ENST00000406453.3	chr7	5331360:5331452:5334495:5334565:5336566:5336829,	5334496	5334565	5334546	5334546	Frame_Shift_Del	G	-	p.Q200fs
LIHC	TCGA-DD-A1EG-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5364726:5364879:5372252:5372680:5385192:5385441,	5372253	5372680	5372259	5372259	Frame_Shift_Del	G	-	p.P2047fs
LIHC	TCGA-DD-A1EG-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5402280:5402456:5410005:5410995:5413685:5414112,	5410006	5410995	5410321	5410321	Frame_Shift_Del	C	-	p.E1302fs
LIHC	TCGA-DD-A1EG-01	TNRC18	ENST00000399537.4,ENST00000413081.1,ENST00000430969.1	chr7	5415744:5415855:5416477:5416624:5417001:5417207,	5416478	5416624	5416612	5416612	Frame_Shift_Del	G	-	p.P825fs
LIHC	TCGA-DD-A1EG-01	TNRC18	ENST00000434361.1,ENST00000399537.4,ENST00000430969.1	chr7	5428935:5428967:5430115:5430259:5434070:5434114,	5430116	5430259	5430179	5430179	Frame_Shift_Del	G	-	p.L143fs
LIHC	TCGA-DD-A1EG-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5430115:5430259:5434070:5434226:5460690:5461120,	5434071	5434226	5434124	5434124	Frame_Shift_Del	G	-	p.P97fs
LIHC	TCGA-DD-A1EG-01	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5541017	5541017	Frame_Shift_Del	G	-	p.L295fs
LIHC	TCGA-DD-A1EG-01	ACTB	ENST00000477812.1	chr7	5568323:5568350:5568791:5569294:5570154:5570235,	5568792	5569294	5568819	5568819	Frame_Shift_Del	G	-	p.P112fs
LIHC	TCGA-DD-A1EG-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5756346:5756397:5760663:5760803:5764954:5765069,	5760664	5760803	5760681	5760681	Frame_Shift_Del	T	-	p.I486fs
LIHC	TCGA-DD-A1EG-01	PMS2	ENST00000382321.4,ENST00000441476.2,ENST00000265849.7	chr7	6017218:6017388:6018226:6018327:6022454:6022622,	6018227	6018327	6018253	6018253	Frame_Shift_Del	C	-	p.G750fs
LIHC	TCGA-DD-A1EG-01	USP42	ENST00000521713.1,ENST00000479544.2,ENST00000404008.2	chr7	6144652:6144663:6150755:6151005:6154953:6155012,	6150756	6151005	6150800	6150800	Frame_Shift_Del	C	-	p.D12fs
LIHC	TCGA-DD-A1EG-01	USP42	ENST00000306177.5,ENST00000465073.2,ENST00000479544.2,ENST00000404008.2,ENST00000426246.2	chr7	6178722:6178825:6179758:6179826:6180544:6180615,	6179759	6179826	6179779	6179779	Frame_Shift_Del	C	-	p.A226fs
LIHC	TCGA-DD-A1EG-01	DAGLB	ENST00000436575.1,ENST00000297056.6	chr7	6472467:6472590:6474392:6474651:6485583:6485735,6472467:6472590:6474392:6474651:6475992:6476164,	6474393	6474651	6474500	6474500	Frame_Shift_Del	T	-	p.S191fs
LIHC	TCGA-DD-A1EG-01	ZDHHC4	ENST00000396709.1,ENST00000474097.1	chr7	6618200:6618351:6620185:6620309:6621237:6621311,6618196:6618377:6620185:6620309:6621237:6621311,	6620186	6620309	6620268	6620268	Frame_Shift_Del	A	-	p.K26fs
LIHC	TCGA-DD-A1EG-01	ZDHHC4	ENST00000396713.2,ENST00000405731.3,ENST00000396709.1,ENST00000396707.2,ENST00000335965.6,ENST00000396706.2	chr7	6622936:6623062:6624646:6624891:6628247:6628550,	6624647	6624891	6624659	6624659	Frame_Shift_Del	G	-	p.W170fs
LIHC	TCGA-DD-A1EG-01	C7orf26	ENST00000359073.5	chr7	6629774:6630106:6631333:6631498:6634065:6634231,	6631334	6631498	6631365	6631365	Frame_Shift_Del	T	-	p.I94fs
LIHC	TCGA-DD-A1EG-01	C7orf26	ENST00000359073.5	chr7	6629774:6630106:6631333:6631498:6634065:6634231,	6631334	6631498	6631429	6631429	Frame_Shift_Del	A	-	p.G115fs
LIHC	TCGA-DD-A1EG-01	RSPH10B2	ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6819240:6819355:6820439:6820519:6820958:6821107,	6820440	6820519	6820473	6820473	Frame_Shift_Del	A	-	p.T521fs
LIHC	TCGA-DD-A1EG-01	C1GALT1	ENST00000419721.1,ENST00000436587.2	chr7	7222260:7222451:7273933:7274170:7277885:7277965,	7273934	7274170	7274036	7274036	Frame_Shift_Del	T	-	p.I29fs
LIHC	TCGA-DD-A1EG-01	COL28A1	ENST00000399429.3,ENST00000435823.1,ENST00000444268.1	chr7	7472103:7472172:7472262:7472331:7476025:7476094,	7472263	7472331	7472312	7472312	Frame_Shift_Del	C	-	p.G627fs
LIHC	TCGA-DD-A1EG-01	RPA3	ENST00000396682.2,ENST00000223129.4	chr7	7677494:7677603:7678700:7678775:7679950:7680208,	7678701	7678775	7678726	7678726	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-DD-A1EG-01	PHF14	ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11076611:11076718:11078386:11078482:11080298:11080402,	11078387	11078482	11078454	11078454	Frame_Shift_Del	G	-	p.W683fs
LIHC	TCGA-DD-A1EG-01	ETV1	ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000399357.3,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000343495.5	chr7	13935482:13935712:13940362:13940464:13946054:13946123,	13940363	13940464	13940436	13940436	Frame_Shift_Del	T	-	p.N362fs
LIHC	TCGA-DD-A1EG-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975344	13975344	Frame_Shift_Del	G	-	p.P163fs
LIHC	TCGA-DD-A1EG-01	ETV1	ENST00000399357.3,ENST00000443608.1,ENST00000403527.1	chr7	13978820:13978871:14017051:14017105:14026262:14026310,13978820:13978871:14017051:14017105:14025740:14025929,	14017052	14017105	14017055	14017055	Frame_Shift_Del	T	-	p.S78fs
LIHC	TCGA-DD-A1EG-01	ISPD	ENST00000407010.2	chr7	16348147:16348252:16415716:16415866:16445685:16445962,	16415717	16415866	16415764	16415764	Frame_Shift_Del	T	-	p.M213fs
LIHC	TCGA-DD-A1EG-01	BZW2	ENST00000452975.2,ENST00000437745.1	chr7	16722404:16722470:16729421:16729531:16734458:16734629,	16729422	16729531	16729449	16729449	Frame_Shift_Del	T	-	p.L190fs
LIHC	TCGA-DD-A1EG-01	BZW2	ENST00000452975.2,ENST00000407633.1,ENST00000437745.1,ENST00000415365.1,ENST00000405202.1,ENST00000433922.2,ENST00000436868.1,ENST00000258761.3	chr7	16729421:16729531:16734458:16734629:16736539:16736672,	16734459	16734629	16734494	16734494	Frame_Shift_Del	T	-	p.H229fs
LIHC	TCGA-DD-A1EG-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17378699	17378699	Frame_Shift_Del	C	-	p.T417fs
LIHC	TCGA-DD-A1EG-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409389.1,ENST00000409076.2	chr7	17841210:17841282:17843041:17843203:17854456:17854567,	17843042	17843203	17843045	17843045	Frame_Shift_Del	A	-	p.F752fs
LIHC	TCGA-DD-A1EG-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198146	20198146	Frame_Shift_Del	T	-	p.N613fs
LIHC	TCGA-DD-A1EG-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20739447:20739552:20739680:20739758:20744346:20744430,	20739681	20739758	20739702	20739702	Frame_Shift_Del	G	-	p.G761fs
LIHC	TCGA-DD-A1EG-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20767937:20768078:20778605:20778762:20782499:20782697,	20778606	20778762	20778608	20778608	Frame_Shift_Del	T	-	p.V957fs
LIHC	TCGA-DD-A1EG-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20784854:20785061:20792982:20793129:20795049:20795247,	20792983	20793129	20793068	20793068	Frame_Shift_Del	A	-	p.Q1172fs
LIHC	TCGA-DD-A1EG-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21600708:21600788:21603803:21604015:21609686:21609917,	21603804	21604015	21603828	21603828	Frame_Shift_Del	A	-	p.E336fs
LIHC	TCGA-DD-A1EG-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21600708:21600788:21603803:21604015:21609686:21609917,	21603804	21604015	21604010	21604010	Frame_Shift_Del	A	-	p.N397fs
LIHC	TCGA-DD-A1EG-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21678556:21678683:21695449:21695599:21698415:21698649,	21695450	21695599	21695553	21695553	Frame_Shift_Del	A	-	p.E1688fs
LIHC	TCGA-DD-A1EG-01	RAPGEF5	ENST00000401957.2,ENST00000344041.6	chr7	22184661:22184840:22186514:22186637:22190024:22190122,	22186515	22186637	22186629	22186629	Frame_Shift_Del	A	-	p.F478fs
LIHC	TCGA-DD-A1EG-01	RAPGEF5	ENST00000405243.1,ENST00000475788.1,ENST00000344041.6	chr7	22233532:22233651:22259484:22259610:22270464:22270538,	22259485	22259610	22259506	22259506	Frame_Shift_Del	T	-	p.K172fs
LIHC	TCGA-DD-A1EG-01	IL6	ENST00000485300.1,ENST00000404625.1,ENST00000401630.3,ENST00000407492.1,ENST00000258743.5	chr7	22768311:22768425:22769132:22769279:22771024:22771313,	22769133	22769279	22769148	22769148	Frame_Shift_Del	A	-	p.K114fs
LIHC	TCGA-DD-A1EG-01	IL6	ENST00000485300.1,ENST00000404625.1,ENST00000401630.3,ENST00000407492.1,ENST00000258743.5	chr7	22768311:22768425:22769132:22769279:22771024:22771313,	22769133	22769279	22769274	22769274	Frame_Shift_Del	A	-	p.K157fs
LIHC	TCGA-DD-A1EG-01	OSBPL3	ENST00000409452.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1	chr7	24881994:24882032:24888687:24888795:24892122:24892232,	24888688	24888795	24888721	24888721	Frame_Shift_Del	G	-	p.P411fs
LIHC	TCGA-DD-A1EG-01	OSBPL3	ENST00000409452.1,ENST00000396429.1,ENST00000313367.2,ENST00000409759.1,ENST00000353930.1	chr7	24901231:24901388:24902818:24902911:24903114:24903218,	24902819	24902911	24902831	24902831	Frame_Shift_Del	T	-	p.K286fs
LIHC	TCGA-DD-A1EG-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24903114:24903218:24904960:24905084:24905688:24905856,	24904961	24905084	24904971	24904971	Frame_Shift_Del	T	-	p.K221fs
LIHC	TCGA-DD-A1EG-01	C7orf31	ENST00000443822.1,ENST00000283905.3,ENST00000409280.1	chr7	25198119:25198149:25200807:25200879:25207907:25208084,	25200808	25200879	25200833	25200833	Frame_Shift_Del	T	-	p.S120fs
LIHC	TCGA-DD-A1EG-01	C7orf31	ENST00000443822.1,ENST00000283905.3,ENST00000415598.1,ENST00000409280.1	chr7	25200843:25200879:25207907:25208084:25218793:25218951,	25207908	25208084	25207918	25207918	Frame_Shift_Del	T	-	p.T101fs
LIHC	TCGA-DD-A1EG-01	JAZF1	ENST00000430432.1,ENST00000283928.5,ENST00000447620.1	chr7	27880387:27880486:27934838:27935035:28031527:28031600,	27934839	27935035	27934939	27934939	Frame_Shift_Del	C	-	p.G95fs
LIHC	TCGA-DD-A1EG-01	SCRN1	ENST00000242059.5,ENST00000409497.1,ENST00000434476.2,ENST00000426154.1,ENST00000425819.2	chr7	29966067:29966248:29976171:29976337:29980297:29980492,	29976172	29976337	29976262	29976262	Frame_Shift_Del	A	-	p.F272fs
LIHC	TCGA-DD-A1EG-01	PLEKHA8	ENST00000396259.1,ENST00000396257.2,ENST00000449726.1,ENST00000258679.7,ENST00000440706.2	chr7	30090049:30090090:30092324:30092482:30094324:30094481,	30092325	30092482	30092422	30092422	Frame_Shift_Del	A	-	p.K246fs
LIHC	TCGA-DD-A1EG-01	ZNRF2	ENST00000323037.4	chr7	30363257:30363353:30395343:30395449:30401992:30402072,	30395344	30395449	30395389	30395389	Frame_Shift_Del	A	-	p.E205fs
LIHC	TCGA-DD-A1EG-01	PDE1C	ENST00000396193.1	chr7	31920461:31920473:32209396:32209568:32249100:32249151,	32209397	32209568	32209495	32209495	Frame_Shift_Del	C	-	p.R70fs
LIHC	TCGA-DD-A1EG-01	AVL9	ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32598834:32599076:32609631:32609766:32612810:32613030,	32609632	32609766	32609643	32609643	Frame_Shift_Del	T	-	p.C409fs
LIHC	TCGA-DD-A1EG-01	BBS9	ENST00000355070.2	chr7	33388679:33388782:33390830:33390935:33392470:33392485,33388679:33388782:33390830:33390935:33397466:33397607,	33390831	33390935	33390872	33390872	Frame_Shift_Del	A	-	p.K492fs
LIHC	TCGA-DD-A1EG-01	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	34014313:34014396:34085917:34086017:34091472:34091582,	34085918	34086017	34086004	34086004	Frame_Shift_Del	C	-	p.C221fs
LIHC	TCGA-DD-A1EG-01	DPY19L1	ENST00000310974.4	chr7	34979764:34979939:34981376:34981496:34982226:34982251,	34981377	34981496	34981447	34981447	Frame_Shift_Del	A	-	p.L467fs
LIHC	TCGA-DD-A1EG-01	HERPUD2	ENST00000311350.3	chr7	35712810:35712888:35733793:35734237:35734410:35734633,	35733794	35734237	35733826	35733826	Frame_Shift_Del	T	-	p.T39fs
LIHC	TCGA-DD-A1EG-01	HERPUD2	ENST00000427455.1	chr7	35707163:35707198:35733793:35734207:35734410:35734633,	35733794	35734207	35733826	35733826	Frame_Shift_Del	T	-	p.T39fs
LIHC	TCGA-DD-A1EG-01	SEPT7	ENST00000475109.1	chr7	35840828:35840880:35872407:35872503:35903161:35903268,	35872408	35872503	35872467	35872467	Frame_Shift_Del	A	-	p.R28fs
LIHC	TCGA-DD-A1EG-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373498	36373498	Frame_Shift_Del	C	-	p.A374fs
LIHC	TCGA-DD-A1EG-01	KIAA0895	ENST00000436884.1	chr7	36374654:36374787:36396510:36397199:36406524:36406810,36374654:36374787:36396510:36397199:36406312:36406522,36375762:36375906:36396510:36397199:36406524:36406810,36375762:36375906:36396510:36397199:36406719:36406780,	36396511	36397199	36397022	36397022	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A1EG-01	ANLN	ENST00000265748.2	chr7	36455366:36455493:36456688:36456799:36458852:36459076,	36456689	36456799	36456712	36456712	Frame_Shift_Del	A	-	p.K516fs
LIHC	TCGA-DD-A1EG-01	ANLN	ENST00000428612.1,ENST00000265748.2,ENST00000457743.1,ENST00000396068.2	chr7	36478812:36478899:36483363:36483471:36489273:36489287,	36483364	36483471	36483419	36483419	Frame_Shift_Del	T	-	p.L1009fs
LIHC	TCGA-DD-A1EG-01	ELMO1	ENST00000448602.1,ENST00000310758.4,ENST00000442504.1,ENST00000396045.3,ENST00000341056.3,ENST00000396040.2	chr7	36901263:36901341:36909997:36910080:36917614:36917722,	36909998	36910080	36910012	36910012	Frame_Shift_Del	G	-	p.L631fs
LIHC	TCGA-DD-A1EG-01	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379486	39379486	Frame_Shift_Del	C	-	p.P253fs
LIHC	TCGA-DD-A1EG-01	RALA	ENST00000468201.1	chr7	39729980:39730189:39736283:39736458:39745721:39745901,39663163:39663424:39736283:39736458:39745721:39745901,	39736284	39736458	39736435	39736435	Frame_Shift_Del	A	-	p.K159fs
LIHC	TCGA-DD-A1EG-01	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027652	40027652	Frame_Shift_Del	A	-	p.K556fs
LIHC	TCGA-DD-A1EG-01	HECW1	ENST00000453890.1,ENST00000395891.2	chr7	43508518:43508704:43519208:43519343:43531673:43531779,	43519209	43519343	43519211	43519211	Frame_Shift_Del	T	-	p.S1034fs
LIHC	TCGA-DD-A1EG-01	HECW1	ENST00000453890.1,ENST00000395891.2	chr7	43508518:43508704:43519208:43519343:43531673:43531779,	43519209	43519343	43519253	43519253	Frame_Shift_Del	C	-	p.D1048fs
LIHC	TCGA-DD-A1EG-01	STK17A	ENST00000319357.5	chr7	43647854:43647999:43659195:43659322:43663170:43663219,	43659196	43659322	43659252	43659252	Frame_Shift_Del	T	-	p.D207fs
LIHC	TCGA-DD-A1EG-01	YKT6	ENST00000223369.2,ENST00000447123.1,ENST00000496112.1	chr7	44244173:44244249:44245983:44246084:44246986:44247091,	44245984	44246084	44246056	44246056	Frame_Shift_Del	C	-	p.S87fs
LIHC	TCGA-DD-A1EG-01	NPC1L1	ENST00000289547.4,ENST00000381160.3	chr7	44571353:44571443:44571678:44571816:44573029:44573077,	44571679	44571816	44571748	44571748	Frame_Shift_Del	C	-	p.G826fs
LIHC	TCGA-DD-A1EG-01	NPC1L1	ENST00000289547.4,ENST00000381160.3,ENST00000546276.1	chr7	44573029:44573157:44573337:44573452:44574045:44574228,	44573338	44573452	44573443	44573443	Frame_Shift_Del	G	-	p.R727fs
LIHC	TCGA-DD-A1EG-01	DDX56	ENST00000415758.1,ENST00000433257.1,ENST00000485367.1,ENST00000431640.1,ENST00000467318.1,ENST00000421223.1,ENST00000258772.5	chr7	44611090:44611335:44611945:44612036:44612172:44612343,	44611946	44612036	44611975	44611975	Frame_Shift_Del	C	-	p.A206fs
LIHC	TCGA-DD-A1EG-01	TMED4	ENST00000457408.2	chr7	44617492:44619227:44620691:44620838:44621047:44621155,	44620692	44620838	44620811	44620811	Frame_Shift_Del	C	-	p.E139fs
LIHC	TCGA-DD-A1EG-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000439616.2,ENST00000543843.1,ENST00000447398.1,ENST00000449767.1	chr7	44721318:44721447:44733423:44733603:44734022:44734175,	44733424	44733603	44733503	44733503	Frame_Shift_Del	T	-	p.I472fs
LIHC	TCGA-DD-A1EG-01	ZMIZ2	ENST00000309315.4,ENST00000478045.1,ENST00000433667.1,ENST00000413916.1,ENST00000441627.1,ENST00000463056.1,ENST00000265346.7	chr7	44804933:44805178:44805762:44805932:44806019:44806153,	44805763	44805932	44805855	44805855	Frame_Shift_Del	C	-	p.P780fs
LIHC	TCGA-DD-A1EG-01	MYO1G	ENST00000488554.1,ENST00000495831.1,ENST00000258787.7,ENST00000463516.1,ENST00000483585.1	chr7	45004013:45004118:45004543:45004688:45005235:45005459,	45004544	45004688	45004609	45004609	Frame_Shift_Del	C	-	p.A821fs
LIHC	TCGA-DD-A1EG-01	MYO1G	ENST00000488554.1,ENST00000495831.1,ENST00000258787.7,ENST00000464434.1,ENST00000480503.1,ENST00000463516.1,ENST00000483585.1	chr7	45009638:45009753:45010190:45010336:45010433:45010658,	45010191	45010336	45010272	45010272	Frame_Shift_Del	C	-	p.G379fs
LIHC	TCGA-DD-A1EG-01	ADCY1	ENST00000297323.7	chr7	45747948:45748063:45750126:45750251:45753291:45762715,	45750127	45750251	45750190	45750190	Frame_Shift_Del	G	-	p.W999fs
LIHC	TCGA-DD-A1EG-01	ADCY1	ENST00000297323.7	chr7	45747948:45748063:45750126:45750251:45753291:45762715,	45750127	45750251	45750248	45750248	Frame_Shift_Del	C	-	p.I1018fs
LIHC	TCGA-DD-A1EG-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000457718.1	chr7	47385784:47385954:47407961:47409218:47436396:47436501,	47407962	47409218	47408668	47408668	Frame_Shift_Del	A	-	p.F525fs
LIHC	TCGA-DD-A1EG-01	HUS1	ENST00000446009.1,ENST00000258774.5,ENST00000432627.1,ENST00000442024.1,ENST00000458191.1,ENST00000432325.1,ENST00000436444.1	chr7	48015251:48015284:48016326:48016434:48018013:48018131,	48016327	48016434	48016390	48016390	Frame_Shift_Del	G	-	p.P134fs
LIHC	TCGA-DD-A1EG-01	ABCA13	ENST00000484268.1,ENST00000435803.1	chr7	48391777:48392084:48407390:48407505:48411764:48412094,	48407391	48407505	48407413	48407413	Frame_Shift_Del	T	-	p.F3572fs
LIHC	TCGA-DD-A1EG-01	COBL	ENST00000265136.7,ENST00000462395.1,ENST00000395542.2,ENST00000431948.1	chr7	51084976:51085265:51092805:51093069:51094242:51094362,	51092806	51093069	51092915	51092915	Frame_Shift_Del	G	-	p.P1302fs
LIHC	TCGA-DD-A1EG-01	COBL	ENST00000445054.1	chr7	51084976:51085265:51092805:51092928:51094242:51094362,	51092806	51092928	51092915	51092915	Frame_Shift_Del	G	-	p.P1302fs
LIHC	TCGA-DD-A1EG-01	COBL	ENST00000265136.7,ENST00000441453.1,ENST00000395540.2,ENST00000452534.1	chr7	51203854:51204028:51251798:51251896:51258546:51258640,	51251799	51251896	51251841	51251841	Frame_Shift_Del	T	-	p.K247fs
LIHC	TCGA-DD-A1EG-01	VSTM2A	ENST00000404951.1	chr7	54617530:54617863:54621559:54621766:54636823:54637139,	54621560	54621766	54621638	54621638	Frame_Shift_Del	T	-	p.L238fs
LIHC	TCGA-DD-A1EG-01	VOPP1	ENST00000454227.1	chr7	55540707:55540738:55559974:55560111:55565305:55565383,55540707:55540738:55559974:55560111:55588764:55588823,	55559975	55560111	55559989	55559989	Frame_Shift_Del	G	-	p.P105fs
LIHC	TCGA-DD-A1EG-01	PSPH	ENST00000395471.3,ENST00000275605.3,ENST00000437355.2	chr7	56079236:56079562:56082715:56082864:56084926:56085072,	56082716	56082864	56082812	56082812	Frame_Shift_Del	T	-	p.K158fs
LIHC	TCGA-DD-A1EG-01	CCT6A	ENST00000494736.1,ENST00000540286.1,ENST00000462133.1,ENST00000335503.3,ENST00000275603.4	chr7	56129439:56129542:56130375:56130448:56130705:56130871,	56130376	56130448	56130429	56130429	Frame_Shift_Del	A	-	p.K502fs
LIHC	TCGA-DD-A1EG-01	PHKG1	ENST00000297373.2	chr7	56151342:56151408:56154662:56154717:56155290:56155386,	56154663	56154717	56154684	56154684	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A1EG-01	GUSB	ENST00000304895.4,ENST00000345660.6,ENST00000478118.1	chr7	65444464:65444528:65444713:65444898:65445210:65445392,	65444714	65444898	65444761	65444761	Frame_Shift_Del	G	-	p.P178fs
LIHC	TCGA-DD-A1EG-01	ASL	ENST00000395331.3,ENST00000487982.1,ENST00000395332.3,ENST00000304874.9,ENST00000380839.4,ENST00000362000.5	chr7	65547354:65547438:65547866:65547923:65548063:65548161,	65547867	65547923	65547888	65547888	Frame_Shift_Del	G	-	p.G105fs
LIHC	TCGA-DD-A1EG-01	TPST1	ENST00000480281.1,ENST00000304842.5	chr7	65751497:65751696:65817491:65817542:65821811:65821858,	65817492	65817542	65817532	65817532	Frame_Shift_Del	A	-	p.E362fs
LIHC	TCGA-DD-A1EG-01	KCTD7	ENST00000443322.1	chr7	66093944:66094195:66098261:66098431:66103239:66103378,	66098262	66098431	66098378	66098378	Frame_Shift_Del	C	-	p.I87fs
LIHC	TCGA-DD-A1EG-01	SBDS	ENST00000414306.1,ENST00000246868.2	chr7	66452730:66453486:66456123:66456288:66458203:66458404,	66456124	66456288	66456182	66456182	Frame_Shift_Del	T	-	p.K189fs
LIHC	TCGA-DD-A1EG-01	AUTS2	ENST00000403018.2,ENST00000406775.2,ENST00000342771.4,ENST00000476695.1	chr7	69364271:69364484:69583117:69583219:69599521:69599557,	69583118	69583219	69583176	69583176	Frame_Shift_Del	C	-	p.S194fs
LIHC	TCGA-DD-A1EG-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72410952:72411055:72411355:72411532:72412375:72414061,	72411356	72411532	72411406	72411406	Frame_Shift_Del	T	-	p.F308fs
LIHC	TCGA-DD-A1EG-01	NSUN5	ENST00000471461.1	chr7	72717927:72718033:72718226:72718401:72718743:72718859,	72718227	72718401	72718244	72718244	Frame_Shift_Del	G	-	p.P268fs
LIHC	TCGA-DD-A1EG-01	NSUN5	ENST00000428206.1,ENST00000310326.8,ENST00000438747.2,ENST00000252594.6	chr7	72717927:72718033:72718226:72718405:72718743:72718859,	72718227	72718405	72718244	72718244	Frame_Shift_Del	G	-	p.P268fs
LIHC	TCGA-DD-A1EG-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72865176:72865324:72873865:72874048:72877251:72877429,	72873866	72874048	72873910	72873910	Frame_Shift_Del	T	-	p.T1130fs
LIHC	TCGA-DD-A1EG-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72873865:72874048:72877251:72877429:72879768:72879867,	72877252	72877429	72877297	72877297	Frame_Shift_Del	T	-	p.K1068fs
LIHC	TCGA-DD-A1EG-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892108	72892108	Frame_Shift_Del	T	-	p.K561fs
LIHC	TCGA-DD-A1EG-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892185	72892185	Frame_Shift_Del	C	-	p.A536fs
LIHC	TCGA-DD-A1EG-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892630	72892630	Frame_Shift_Del	T	-	p.K387fs
LIHC	TCGA-DD-A1EG-01	MLXIPL	ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3	chr7	73011194:73011262:73011511:73012043:73013855:73013996,	73011512	73012043	73012020	73012020	Frame_Shift_Del	G	-	p.P365fs
LIHC	TCGA-DD-A1EG-01	ABHD11	ENST00000458339.1,ENST00000395147.4,ENST00000412965.1,ENST00000222800.3	chr7	73151975:73152065:73152657:73152793:73152975:73153069,	73152658	73152793	73152731	73152731	Frame_Shift_Del	A	-	p.L72fs
LIHC	TCGA-DD-A1EG-01	ABHD11	ENST00000357419.4	chr7	73151891:73152065:73152662:73152793:73152975:73153069,	73152663	73152793	73152731	73152731	Frame_Shift_Del	A	-	p.L72fs
LIHC	TCGA-DD-A1EG-01	ABHD11	ENST00000437775.2	chr7	73151975:73152065:73152657:73152772:73152975:73153069,	73152658	73152772	73152731	73152731	Frame_Shift_Del	A	-	p.L72fs
LIHC	TCGA-DD-A1EG-01	ELN	ENST00000252034.7,ENST00000380576.5,ENST00000358929.4,ENST00000380562.4,ENST00000320492.7,ENST00000414324.1,ENST00000320399.6,ENST00000458204.1	chr7	73480023:73480062:73480273:73480327:73481061:73481106,	73480274	73480327	73480300	73480300	Frame_Shift_Del	G	-	p.G688fs
LIHC	TCGA-DD-A1EG-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000483414.1	chr7	73520204:73520310:73520406:73520573:73521339:73521523,	73520407	73520573	73520485	73520485	Frame_Shift_Del	G	-	p.G295fs
LIHC	TCGA-DD-A1EG-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000483414.1	chr7	73520406:73520573:73521339:73521523:73522200:73522287,	73521340	73521523	73521387	73521387	Frame_Shift_Del	C	-	p.S340fs
LIHC	TCGA-DD-A1EG-01	LAT2	ENST00000275635.7,ENST00000344995.5,ENST00000475494.1,ENST00000460943.1,ENST00000488266.1,ENST00000465116.1,ENST00000398475.1,ENST00000361082.3	chr7	73630276:73630399:73631154:73631194:73634073:73634114,	73631155	73631194	73631189	73631189	Frame_Shift_Del	A	-	p.R43fs
LIHC	TCGA-DD-A1EG-01	RFC2	ENST00000470266.1,ENST00000480432.1,ENST00000352131.3,ENST00000055077.3,ENST00000494019.1,ENST00000497430.1	chr7	73649861:73649975:73651691:73651772:73653252:73653318,	73651692	73651772	73651741	73651741	Frame_Shift_Del	T	-	p.K264fs
LIHC	TCGA-DD-A1EG-01	RFC2	ENST00000485545.1	chr7	73649861:73649975:73651618:73651772:73653252:73653318,	73651619	73651772	73651741	73651741	Frame_Shift_Del	T	-	p.K264fs
LIHC	TCGA-DD-A1EG-01	CLIP2	ENST00000395060.1,ENST00000223398.6,ENST00000361545.5	chr7	73800850:73800927:73803432:73803589:73811403:73811495,73800850:73800934:73803432:73803589:73811403:73811495,	73803433	73803589	73803437	73803437	Frame_Shift_Del	G	-	p.L856fs
LIHC	TCGA-DD-A1EG-01	NCF1	ENST00000398421.2,ENST00000455062.1	chr7	74195125:74195181:74197281:74197975:74199527:74199607,	74197282	74197975	74197367	74197367	Frame_Shift_Del	G	-	p.T179fs
LIHC	TCGA-DD-A1EG-01	RHBDD2	ENST00000318622.4,ENST00000454791.1	chr7	75508489:75508578:75511146:75511554:75513015:75513166,75510682:75510804:75511146:75511554:75513015:75513166,	75511147	75511554	75511346	75511346	Frame_Shift_Del	G	-	p.L126fs
LIHC	TCGA-DD-A1EG-01	POR	ENST00000439963.1,ENST00000419840.1,ENST00000461988.1,ENST00000412064.2,ENST00000394893.1	chr7	75608768:75608897:75609656:75609806:75610365:75610414,	75609657	75609806	75609792	75609792	Frame_Shift_Del	G	-	p.G168fs
LIHC	TCGA-DD-A1EG-01	POR	ENST00000447222.1	chr7	75608768:75608897:75609656:75610040:75610365:75610490,	75609657	75610040	75609792	75609792	Frame_Shift_Del	G	-	p.G168fs
LIHC	TCGA-DD-A1EG-01	POR	ENST00000454934.1,ENST00000450476.1,ENST00000545601.1,ENST00000419840.1,ENST00000461988.1,ENST00000447222.1,ENST00000460892.1,ENST00000394893.1	chr7	75610834:75610924:75611541:75611640:75612837:75612954,	75611542	75611640	75611563	75611563	Frame_Shift_Del	G	-	p.V252fs
LIHC	TCGA-DD-A1EG-01	STYXL1	ENST00000248600.1,ENST00000359697.3,ENST00000360591.3,ENST00000438695.1,ENST00000340062.5,ENST00000431581.1	chr7	75625816:75625917:75630207:75630320:75633075:75633173,	75630208	75630320	75630282	75630282	Frame_Shift_Del	A	-	p.S246fs
LIHC	TCGA-DD-A1EG-01	DTX2	ENST00000430490.2	chr7	76091043:76091153:76109737:76110094:76111824:76111880,76092970:76093026:76109737:76110094:76111824:76111880,	76109738	76110094	76110015	76110015	Frame_Shift_Del	C	-	p.I63fs
LIHC	TCGA-DD-A1EG-01	CCDC146	ENST00000461259.1,ENST00000415740.2,ENST00000285871.4,ENST00000431197.1	chr7	76911908:76912102:76916114:76916243:76916756:76916894,	76916115	76916243	76916230	76916230	Frame_Shift_Del	A	-	p.Q755fs
LIHC	TCGA-DD-A1EG-01	PTPN12	ENST00000248594.6,ENST00000435495.2,ENST00000522115.2,ENST00000415482.2	chr7	77227158:77227218:77229980:77230123:77234195:77234252,77227158:77227218:77229980:77230123:77236551:77236618,	77229981	77230123	77230002	77230002	Frame_Shift_Del	T	-	p.F192fs
LIHC	TCGA-DD-A1EG-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379040	77379040	Frame_Shift_Del	A	-	p.N336fs
LIHC	TCGA-DD-A1EG-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379288	77379288	Frame_Shift_Del	T	-	p.Y417fs
LIHC	TCGA-DD-A1EG-01	PHTF2	ENST00000454592.1,ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2	chr7	77551939:77552095:77558425:77558644:77569346:77569619,77551939:77552095:77558425:77558644:77567026:77567155,	77558426	77558644	77558612	77558612	Frame_Shift_Del	A	-	p.K403fs
LIHC	TCGA-DD-A1EG-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82578969	82578969	Frame_Shift_Del	T	-	p.K3645fs
LIHC	TCGA-DD-A1EG-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579034	82579034	Frame_Shift_Del	A	-	p.Y3624fs
LIHC	TCGA-DD-A1EG-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579867	82579867	Frame_Shift_Del	C	-	p.G3346fs
LIHC	TCGA-DD-A1EG-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579937	82579937	Frame_Shift_Del	A	-	p.S3323fs
LIHC	TCGA-DD-A1EG-01	KIAA1324L	ENST00000394714.2,ENST00000297222.6,ENST00000444627.1,ENST00000450689.2,ENST00000416314.1	chr7	86509392:86509846:86521039:86521205:86522237:86522251,	86521040	86521205	86521160	86521160	Frame_Shift_Del	T	-	p.K970fs
LIHC	TCGA-DD-A1EG-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000413276.2,ENST00000412139.2,ENST00000579850.1,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2,ENST00000425406.1,ENST00000488352.2	chr7	86823077:86823418:86823999:86824144:86824346:86824482,	86824000	86824144	86824055	86824055	Frame_Shift_Del	C	-	p.T429fs
LIHC	TCGA-DD-A1EG-01	ABCB4	ENST00000265723.4	chr7	87032450:87032597:87035603:87035831:87037352:87037550,	87035604	87035831	87035788	87035788	Frame_Shift_Del	T	-	p.K1109fs
LIHC	TCGA-DD-A1EG-01	ABCB4	ENST00000545634.1,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87032450:87032597:87035603:87035810:87037352:87037550,	87035604	87035810	87035788	87035788	Frame_Shift_Del	T	-	p.K1109fs
LIHC	TCGA-DD-A1EG-01	ABCB4	ENST00000358400.3,ENST00000453593.1	chr7	87041208:87041349:87042932:87043033:87046627:87046831,87038551:87038708:87042932:87043033:87046627:87046831,	87042933	87043033	87043011	87043011	Frame_Shift_Del	T	-	p.N902fs
LIHC	TCGA-DD-A1EG-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87042932:87043033:87046627:87046831:87047852:87047936,	87046628	87046831	87046649	87046649	Frame_Shift_Del	T	-	p.K887fs
LIHC	TCGA-DD-A1EG-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87049313:87049391:87051436:87051541:87053221:87053368,	87051437	87051541	87051452	87051452	Frame_Shift_Del	A	-	p.F767fs
LIHC	TCGA-DD-A1EG-01	ABCB1	ENST00000488737.2,ENST00000543898.1,ENST00000265724.3,ENST00000496821.1	chr7	87144546:87144744:87145824:87145981:87148641:87148782,	87145825	87145981	87145862	87145862	Frame_Shift_Del	G	-	p.P1016fs
LIHC	TCGA-DD-A1EG-01	DBF4	ENST00000431138.1,ENST00000430279.1,ENST00000265728.1,ENST00000413643.1	chr7	87516643:87516713:87517297:87517374:87525788:87525825,	87517298	87517374	87517372	87517372	Frame_Shift_Del	G	-	p.G200fs
LIHC	TCGA-DD-A1EG-01	CDK14	ENST00000487145.1,ENST00000406263.1,ENST00000380050.3,ENST00000431029.1,ENST00000436577.2,ENST00000265741.3	chr7	90528605:90528668:90546915:90547039:90585011:90585108,	90546916	90547039	90546988	90546988	Frame_Shift_Del	C	-	p.P213fs
LIHC	TCGA-DD-A1EG-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91691587:91691800:91694544:91694777:91695740:91695860,	91694545	91694777	91694755	91694755	Frame_Shift_Del	A	-	p.E2075fs
LIHC	TCGA-DD-A1EG-01	LRRD1	ENST00000430130.2,ENST00000458448.1	chr7	91774197:91774388:91775396:91775514:91779847:91780009,	91775397	91775514	91775438	91775438	Frame_Shift_Del	T	-	p.K785fs
LIHC	TCGA-DD-A1EG-01	KRIT1	ENST00000394505.2,ENST00000340022.2,ENST00000394503.2,ENST00000394507.1,ENST00000475770.1,ENST00000412043.2	chr7	91852135:91852292:91855033:91855141:91855839:91855996,	91855034	91855141	91855043	91855043	Frame_Shift_Del	A	-	p.I415fs
LIHC	TCGA-DD-A1EG-01	ANKIB1	ENST00000265742.3	chr7	91957096:91957214:91972337:91972546:91974291:91974380,	91972338	91972546	91972500	91972500	Frame_Shift_Del	C	-	p.S317fs
LIHC	TCGA-DD-A1EG-01	ANKIB1	ENST00000422095.1,ENST00000265742.3	chr7	92015822:92015957:92017111:92017198:92017288:92017355,	92017112	92017198	92017175	92017175	Frame_Shift_Del	A	-	p.K606fs
LIHC	TCGA-DD-A1EG-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92138642:92138725:92140257:92140361:92140893:92141017,	92140258	92140361	92140297	92140297	Frame_Shift_Del	A	-	p.F516fs
LIHC	TCGA-DD-A1EG-01	HEPACAM2	ENST00000440868.1,ENST00000492616.1	chr7	92825140:92825214:92826553:92826591:92826797:92826923,	92826554	92826591	92826563	92826563	Frame_Shift_Del	T	-	p.T398fs
LIHC	TCGA-DD-A1EG-01	TFPI2	ENST00000451238.1	chr7	93516572:93516743:93518346:93518535:93519448:93519482,93516572:93516667:93518346:93518535:93519448:93519482,	93518347	93518535	93518420	93518420	Frame_Shift_Del	C	-	p.G129fs
LIHC	TCGA-DD-A1EG-01	COL1A2	ENST00000297268.6	chr7	94029507:94029600:94030878:94030932:94033867:94033912,	94030879	94030932	94030920	94030920	Frame_Shift_Del	C	-	p.G89fs
LIHC	TCGA-DD-A1EG-01	COL1A2	ENST00000297268.6	chr7	94035561:94035615:94037158:94037203:94037494:94037548,	94037159	94037203	94037199	94037199	Frame_Shift_Del	A	-	p.Q212fs
LIHC	TCGA-DD-A1EG-01	CASD1	ENST00000417387.1	chr7	94139379:94139529:94146871:94146968:94156473:94156518,	94146872	94146968	94146914	94146914	Frame_Shift_Del	T	-	p.L59fs
LIHC	TCGA-DD-A1EG-01	CASD1	ENST00000297273.4	chr7	94180653:94180790:94181661:94181739:94183794:94183887,	94181662	94181739	94181689	94181689	Frame_Shift_Del	A	-	p.K662fs
LIHC	TCGA-DD-A1EG-01	DYNC1I1	ENST00000359388.4,ENST00000537881.1	chr7	95439703:95439818:95442558:95442649:95499194:95499310,	95442559	95442649	95442565	95442565	Frame_Shift_Del	C	-	p.T94fs
LIHC	TCGA-DD-A1EG-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442565	95442565	Frame_Shift_Del	C	-	p.T94fs
LIHC	TCGA-DD-A1EG-01	DYNC1I1	ENST00000359388.4,ENST00000537881.1	chr7	95439703:95439818:95442558:95442649:95499194:95499310,	95442559	95442649	95442576	95442576	Frame_Shift_Del	C	-	p.P98fs
LIHC	TCGA-DD-A1EG-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442576	95442576	Frame_Shift_Del	C	-	p.P98fs
LIHC	TCGA-DD-A1EG-01	SLC25A13	ENST00000416240.2,ENST00000265631.5,ENST00000542654.1	chr7	95751150:95751309:95761054:95761193:95775867:95776008,	95761055	95761193	95761108	95761108	Frame_Shift_Del	T	-	p.N514fs
LIHC	TCGA-DD-A1EG-01	TAC1	ENST00000319273.5,ENST00000491437.1,ENST00000346867.4	chr7	97364137:97364161:97365610:97365664:97369185:97369375,	97365611	97365664	97365646	97365646	Frame_Shift_Del	A	-	p.K109fs
LIHC	TCGA-DD-A1EG-01	ASNS	ENST00000422745.1,ENST00000394308.3,ENST00000394309.3,ENST00000437628.1,ENST00000175506.4,ENST00000454046.1,ENST00000444334.1,ENST00000455086.1	chr7	97487589:97487717:97488165:97488267:97488524:97488710,	97488166	97488267	97488206	97488206	Frame_Shift_Del	T	-	p.K245fs
LIHC	TCGA-DD-A1EG-01	LMTK2	ENST00000297293.5	chr7	97820925:97823884:97832885:97833018:97833255:97833498,	97832886	97833018	97832890	97832890	Frame_Shift_Del	C	-	p.T1371fs
LIHC	TCGA-DD-A1EG-01	TECPR1	ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000483740.1,ENST00000490842.1	chr7	97858355:97858478:97860272:97860430:97860535:97860685,	97860273	97860430	97860345	97860345	Frame_Shift_Del	T	-	p.K737fs
LIHC	TCGA-DD-A1EG-01	BAIAP2L1	ENST00000005260.8	chr7	97937000:97937208:97939756:97939904:97941408:97941576,	97939757	97939904	97939854	97939854	Frame_Shift_Del	G	-	p.P286fs
LIHC	TCGA-DD-A1EG-01	BAIAP2L1	ENST00000005260.8,ENST00000462558.1	chr7	97949548:97949610:97984353:97984440:97991668:97991744,	97984354	97984440	97984370	97984370	Frame_Shift_Del	G	-	p.P66fs
LIHC	TCGA-DD-A1EG-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98503799:98503878:98506350:98506585:98507678:98508042,	98506351	98506585	98506406	98506406	Frame_Shift_Del	C	-	p.P391fs
LIHC	TCGA-DD-A1EG-01	KPNA7	ENST00000327442.6	chr7	98792704:98792961:98793706:98793789:98800728:98800863,	98793707	98793789	98793760	98793760	Frame_Shift_Del	T	-	p.K77fs
LIHC	TCGA-DD-A1EG-01	PDAP1	ENST00000350498.3	chr7	98997925:98998047:99001020:99001128:99002484:99002576,	99001021	99001128	99001111	99001111	Frame_Shift_Del	T	-	p.K41fs
LIHC	TCGA-DD-A1EG-01	PDAP1	ENST00000426447.1	chr7	98997925:98998047:99001020:99001148:99002484:99002576,	99001021	99001148	99001111	99001111	Frame_Shift_Del	T	-	p.K41fs
LIHC	TCGA-DD-A1EG-01	ZNF394	ENST00000394177.3,ENST00000337673.6	chr7	99092201:99092254:99096338:99096465:99097260:99097327,	99096339	99096465	99096463	99096463	Frame_Shift_Del	C	-	p.G153fs
LIHC	TCGA-DD-A1EG-01	CYP3A7	ENST00000336374.2,ENST00000477357.1	chr7	99302666:99303218:99305434:99305597:99306657:99306884,	99305435	99305597	99305586	99305586	Frame_Shift_Del	T	-	p.K422fs
LIHC	TCGA-DD-A1EG-01	COPS6	ENST00000472107.1,ENST00000468499.1,ENST00000496358.1	chr7	99686615:99686689:99686912:99687038:99687237:99687250,	99686913	99687038	99686969	99686969	Frame_Shift_Del	C	-	p.P45fs
LIHC	TCGA-DD-A1EG-01	COPS6	ENST00000418625.1	chr7	99686615:99686689:99686915:99687038:99687237:99687250,	99686916	99687038	99686969	99686969	Frame_Shift_Del	C	-	p.P45fs
LIHC	TCGA-DD-A1EG-01	GPC2	ENST00000471717.1	chr7	99772307:99772388:99773829:99773988:99774656:99774990,99773194:99773517:99773829:99773988:99774656:99774990,	99773830	99773988	99773870	99773870	Frame_Shift_Del	A	-	p.F95fs
LIHC	TCGA-DD-A1EG-01	STAG3	ENST00000426455.1,ENST00000317296.5,ENST00000496157.1	chr7	99780345:99780462:99783822:99783919:99786075:99786152,	99783823	99783919	99783906	99783906	Frame_Shift_Del	T	-	p.S140fs
LIHC	TCGA-DD-A1EG-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028416	100028416	Frame_Shift_Del	G	-	p.G259fs
LIHC	TCGA-DD-A1EG-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028576	100028576	Frame_Shift_Del	C	-	p.A312fs
LIHC	TCGA-DD-A1EG-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028704	100028704	Frame_Shift_Del	C	-	p.P356fs
LIHC	TCGA-DD-A1EG-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028969	100028969	Frame_Shift_Del	G	-	p.R443fs
LIHC	TCGA-DD-A1EG-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100029035	100029035	Frame_Shift_Del	G	-	p.W465fs
LIHC	TCGA-DD-A1EG-01	TSC22D4	ENST00000393991.1	chr7	100071896:100072063:100074899:100075082:100076416:100076792,	100074900	100075082	100074973	100074973	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A1EG-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100074973	100074973	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A1EG-01	TSC22D4	ENST00000393991.1	chr7	100071896:100072063:100074899:100075082:100076416:100076792,	100074900	100075082	100075048	100075048	Frame_Shift_Del	C	-	p.G205fs
LIHC	TCGA-DD-A1EG-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075048	100075048	Frame_Shift_Del	C	-	p.G205fs
LIHC	TCGA-DD-A1EG-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075651	100075651	Frame_Shift_Del	C	-	p.G4fs
LIHC	TCGA-DD-A1EG-01	MOSPD3	ENST00000462372.1,ENST00000393950.2,ENST00000424091.2,ENST00000223054.4,ENST00000379527.2	chr7	100211129:100211329:100212489:100212654:100212774:100212949,	100212490	100212654	100212575	100212575	Frame_Shift_Del	C	-	p.L199fs
LIHC	TCGA-DD-A1EG-01	EPHB4	ENST00000478459.1,ENST00000487222.1,ENST00000358173.3,ENST00000360620.3	chr7	100404041:100404191:100404986:100405202:100410368:100410406,	100404987	100405202	100405037	100405037	Frame_Shift_Del	A	-	p.S762fs
LIHC	TCGA-DD-A1EG-01	SLC12A9	ENST00000462106.1,ENST00000540482.1,ENST00000354161.3,ENST00000428758.1	chr7	100450398:100450461:100451777:100452000:100454489:100454798,100450398:100450461:100451777:100452000:100456456:100456564,100450374:100450457:100451777:100452000:100454489:100454798,100450374:100450457:100451777:100452000:100452241:100452376,	100451778	100452000	100451861	100451861	Frame_Shift_Del	G	-	p.L14fs
LIHC	TCGA-DD-A1EG-01	TRIP6	ENST00000437505.1	chr7	100465015:100465228:100465729:100465855:100466116:100466488,	100465730	100465855	100465746	100465746	Frame_Shift_Del	G	-	p.R85fs
LIHC	TCGA-DD-A1EG-01	TRIP6	ENST00000417475.1,ENST00000437505.1,ENST00000200457.4,ENST00000476870.1	chr7	100465742:100465855:100466116:100466488:100467991:100468085,	100466117	100466488	100466417	100466417	Frame_Shift_Del	G	-	p.G222fs
LIHC	TCGA-DD-A1EG-01	TRIP6	ENST00000200457.4,ENST00000476870.1	chr7	100469164:100469343:100470245:100470366:100470793:100471075,	100470246	100470366	100470254	100470254	Frame_Shift_Del	C	-	p.A396fs
LIHC	TCGA-DD-A1EG-01	ACHE	ENST00000442452.1	chr7	100488789:100488959:100489954:100490264:100490785:100491525,	100489955	100490264	100490094	100490094	Frame_Shift_Del	G	-	p.L472fs
LIHC	TCGA-DD-A1EG-01	ACHE	ENST00000419336.2	chr7	100488789:100488959:100489954:100490175:100490785:100491525,	100489955	100490175	100490094	100490094	Frame_Shift_Del	G	-	p.L472fs
LIHC	TCGA-DD-A1EG-01	ACHE	ENST00000412389.1,ENST00000241069.5,ENST00000411582.1,ENST00000428317.1,ENST00000302913.4	chr7	100488789:100488959:100489954:100490439:100490785:100491525,	100489955	100490439	100490094	100490094	Frame_Shift_Del	G	-	p.L472fs
LIHC	TCGA-DD-A1EG-01	MOGAT3	ENST00000440203.2,ENST00000379423.3	chr7	100843514:100843585:100843688:100843796:100844026:100844084,	100843689	100843796	100843731	100843731	Frame_Shift_Del	A	-	p.Y59fs
LIHC	TCGA-DD-A1EG-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855841	100855841	Frame_Shift_Del	G	-	p.P325fs
LIHC	TCGA-DD-A1EG-01	ZNHIT1	ENST00000461205.1	chr7	100861599:100861766:100865884:100866055:100866757:100866837,	100865885	100866055	100865963	100865963	Frame_Shift_Del	C	-	p.A34fs
LIHC	TCGA-DD-A1EG-01	ZNHIT1	ENST00000492315.1,ENST00000305105.2,ENST00000461205.1,ENST00000485387.1	chr7	100865884:100866055:100866757:100866837:100866953:100867054,	100866758	100866837	100866807	100866807	Frame_Shift_Del	A	-	p.R81fs
LIHC	TCGA-DD-A1EG-01	CUX1	ENST00000546411.2,ENST00000360264.3,ENST00000292535.7	chr7	101840219:101840585:101842081:101842147:101843350:101843452,	101842082	101842147	101842111	101842111	Frame_Shift_Del	T	-	p.F653fs
LIHC	TCGA-DD-A1EG-01	LRWD1	ENST00000463739.1,ENST00000485808.1,ENST00000485417.1,ENST00000292616.5	chr7	102108165:102108270:102108508:102108634:102108709:102108824,	102108509	102108634	102108582	102108582	Frame_Shift_Del	C	-	p.S251fs
LIHC	TCGA-DD-A1EG-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000440067.1,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102667895:102668005:102669046:102669195:102669797:102669865,	102669047	102669195	102669163	102669163	Frame_Shift_Del	T	-	p.N34fs
LIHC	TCGA-DD-A1EG-01	ARMC10	ENST00000428183.2,ENST00000454559.1	chr7	102724128:102724277:102727076:102727211:102732923:102733100,102724128:102724277:102727076:102727211:102737723:102737795,	102727077	102727211	102727115	102727115	Frame_Shift_Del	A	-	p.A144fs
LIHC	TCGA-DD-A1EG-01	ARMC10	ENST00000428183.2,ENST00000454559.1	chr7	102724128:102724277:102727076:102727211:102732923:102733100,102724128:102724277:102727076:102727211:102737723:102737795,	102727077	102727211	102727119	102727119	Frame_Shift_Del	A	-	p.K146fs
LIHC	TCGA-DD-A1EG-01	SLC26A5	ENST00000393735.2,ENST00000423416.1,ENST00000432958.2,ENST00000306312.3,ENST00000393723.1,ENST00000393729.1,ENST00000339444.6,ENST00000454864.1,ENST00000456463.1,ENST00000393730.1,ENST00000487407.1,ENST00000393727.1	chr7	103032068:103032182:103033365:103033513:103038378:103038461,	103033366	103033513	103033393	103033393	Frame_Shift_Del	T	-	p.K364fs
LIHC	TCGA-DD-A1EG-01	KMT2E	ENST00000334914.7,ENST00000474203.1,ENST00000495267.1,ENST00000257745.4,ENST00000334884.5,ENST00000482560.2,ENST00000476671.1,ENST00000334877.4,ENST00000311117.3	chr7	104681321:104681470:104702610:104702725:104703797:104703824,	104702611	104702725	104702632	104702632	Frame_Shift_Del	C	-	p.S31fs
LIHC	TCGA-DD-A1EG-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105098105:105098373:105099614:105099706:105103067:105103197,	105099615	105099706	105099618	105099618	Frame_Shift_Del	A	-	p.S616fs
LIHC	TCGA-DD-A1EG-01	PUS7	ENST00000481939.1,ENST00000356362.2,ENST00000469408.1	chr7	105135588:105135700:105142866:105143011:105146401:105146503,	105142867	105143011	105142878	105142878	Frame_Shift_Del	T	-	p.K240fs
LIHC	TCGA-DD-A1EG-01	RINT1	ENST00000257700.2,ENST00000497979.1	chr7	105192052:105192154:105195474:105195674:105204179:105204394,	105195475	105195674	105195548	105195548	Frame_Shift_Del	T	-	p.D515fs
LIHC	TCGA-DD-A1EG-01	RINT1	ENST00000257700.2,ENST00000497979.1	chr7	105204179:105204394:105205723:105205904:105205976:105206095,	105205724	105205904	105205784	105205784	Frame_Shift_Del	C	-	p.C649fs
LIHC	TCGA-DD-A1EG-01	ATXN7L1	ENST00000477775.1	chr7	105248217:105248340:105250975:105251050:105254308:105255263,	105250976	105251050	105251040	105251040	Frame_Shift_Del	T	-	p.N828fs
LIHC	TCGA-DD-A1EG-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509148	106509148	Frame_Shift_Del	T	-	p.V381fs
LIHC	TCGA-DD-A1EG-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509521	106509521	Frame_Shift_Del	A	-	p.A505fs
LIHC	TCGA-DD-A1EG-01	HBP1	ENST00000222574.4,ENST00000485846.1,ENST00000498408.1,ENST00000463202.1,ENST00000468410.1	chr7	106827013:106827126:106829736:106829893:106830617:106830762,	106829737	106829893	106829788	106829788	Frame_Shift_Del	T	-	p.F273fs
LIHC	TCGA-DD-A1EG-01	COG5	ENST00000393603.2,ENST00000347053.3,ENST00000297135.3	chr7	106898717:106898828:106921744:106921844:106924015:106924177,	106921745	106921844	106921791	106921791	Frame_Shift_Del	T	-	p.N541fs
LIHC	TCGA-DD-A1EG-01	COG5	ENST00000393603.2,ENST00000347053.3,ENST00000297135.3	chr7	106924015:106924177:106938586:106938791:106964884:106964966,	106938587	106938791	106938688	106938688	Frame_Shift_Del	T	-	p.Q435fs
LIHC	TCGA-DD-A1EG-01	SLC26A3	ENST00000340010.5,ENST00000379083.3,ENST00000422236.2	chr7	107427271:107427354:107427801:107427954:107429968:107430133,	107427802	107427954	107427823	107427823	Frame_Shift_Del	G	-	p.P289fs
LIHC	TCGA-DD-A1EG-01	DLD	ENST00000440410.1,ENST00000417551.1,ENST00000437604.2,ENST00000415325.1,ENST00000537148.1,ENST00000205402.5	chr7	107555950:107556141:107557238:107557409:107557717:107557907,	107557239	107557409	107557312	107557312	Frame_Shift_Del	C	-	p.P317fs
LIHC	TCGA-DD-A1EG-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564710	107564710	Frame_Shift_Del	A	-	p.L1754fs
LIHC	TCGA-DD-A1EG-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564717	107564717	Frame_Shift_Del	T	-	p.T1752fs
LIHC	TCGA-DD-A1EG-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564799	107564799	Frame_Shift_Del	T	-	p.K1724fs
LIHC	TCGA-DD-A1EG-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107618491:107618612:107621053:107621256:107626466:107626530,	107621054	107621256	107621163	107621163	Frame_Shift_Del	T	-	p.K281fs
LIHC	TCGA-DD-A1EG-01	NRCAM	ENST00000379024.4,ENST00000351718.4,ENST00000417701.1,ENST00000379028.3,ENST00000425651.2,ENST00000413765.2,ENST00000379022.4	chr7	107847971:107848103:107849864:107850049:107864168:107864280,	107849865	107850049	107849970	107849970	Frame_Shift_Del	T	-	p.T324fs
LIHC	TCGA-DD-A1EG-01	NRCAM	ENST00000379024.4,ENST00000351718.4,ENST00000417701.1,ENST00000379028.3,ENST00000425651.2,ENST00000413765.2,ENST00000379022.4	chr7	107871474:107871597:107872769:107872966:107875026:107875132,	107872770	107872966	107872861	107872861	Frame_Shift_Del	C	-	p.G112fs
LIHC	TCGA-DD-A1EG-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155166	108155166	Frame_Shift_Del	T	-	p.K257fs
LIHC	TCGA-DD-A1EG-01	PNPLA8	ENST00000453144.1	chr7	108154587:108154737:108154879:108155891:108161919:108161965,108154725:108154737:108154879:108155891:108166472:108166564,	108154880	108155891	108155166	108155166	Frame_Shift_Del	T	-	p.K257fs
LIHC	TCGA-DD-A1EG-01	IFRD1	ENST00000403825.3,ENST00000005558.4,ENST00000535603.1,ENST00000466459.1	chr7	112097050:112097093:112098915:112099073:112101920:112101971,	112098916	112099073	112099000	112099000	Frame_Shift_Del	T	-	p.I165fs
LIHC	TCGA-DD-A1EG-01	TMEM168	ENST00000447395.1,ENST00000312814.6,ENST00000454074.1	chr7	112407229:112407799:112412835:112413110:112415230:112415373,	112412836	112413110	112413017	112413017	Frame_Shift_Del	A	-	p.F455fs
LIHC	TCGA-DD-A1EG-01	FOXP2	ENST00000393489.3,ENST00000403559.4,ENST00000350908.4,ENST00000393494.2,ENST00000393498.2,ENST00000408937.3	chr7	114293980:114294064:114298120:114298322:114299410:114299487,	114298121	114298322	114298235	114298235	Frame_Shift_Del	C	-	p.P486fs
LIHC	TCGA-DD-A1EG-01	FOXP2	ENST00000412402.1	chr7	114293980:114294064:114299410:114299487:114299626:114299728,	114299411	114299487	114299431	114299431	Frame_Shift_Del	T	-	p.F522fs
LIHC	TCGA-DD-A1EG-01	FOXP2	ENST00000412402.1	chr7	114293980:114294064:114299410:114299487:114299626:114299728,	114299411	114299487	114299472	114299472	Frame_Shift_Del	A	-	p.A535fs
LIHC	TCGA-DD-A1EG-01	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619729	114619729	Frame_Shift_Del	A	-	p.Q129fs
LIHC	TCGA-DD-A1EG-01	CAV2	ENST00000484871.1,ENST00000222693.4,ENST00000498493.1	chr7	116139894:116139985:116140313:116140501:116146024:116146083,	116140314	116140501	116140473	116140473	Frame_Shift_Del	T	-	p.F104fs
LIHC	TCGA-DD-A1EG-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116312458:116312631:116339124:116340338:116371721:116371913,	116339125	116340338	116339873	116339873	Frame_Shift_Del	C	-	p.Y245fs
LIHC	TCGA-DD-A1EG-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116411902:116412043:116414934:116415165:116417442:116417523,	116414935	116415165	116415001	116415001	Frame_Shift_Del	C	-	p.S1032fs
LIHC	TCGA-DD-A1EG-01	CTTNBP2	ENST00000435233.1	chr7	117375384:117375475:117385884:117385984:117396608:117396688,	117385885	117385984	117385926	117385926	Frame_Shift_Del	C	-	p.G1165fs
LIHC	TCGA-DD-A1EG-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121693963:121694092:121694994:121695141:121698853:121698996,	121694995	121695141	121695101	121695101	Frame_Shift_Del	A	-	p.E2163fs
LIHC	TCGA-DD-A1EG-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000334010.7,ENST00000449022.2	chr7	122056114:122056218:122078394:122078518:122081565:122081629,	122078395	122078518	122078507	122078507	Frame_Shift_Del	T	-	p.K789fs
LIHC	TCGA-DD-A1EG-01	SND1	ENST00000465900.1,ENST00000486037.1,ENST00000354725.3	chr7	127527964:127528065:127544799:127544872:127569240:127569280,	127544800	127544872	127544870	127544870	Frame_Shift_Del	G	-	p.G509fs
LIHC	TCGA-DD-A1EG-01	RBM28	ENST00000223073.2,ENST00000415472.2,ENST00000481788.1	chr7	127950532:127950984:127953227:127953327:127954816:127955024,	127953228	127953327	127953286	127953286	Frame_Shift_Del	T	-	p.K696fs
LIHC	TCGA-DD-A1EG-01	RBM28	ENST00000223073.2,ENST00000487602.1,ENST00000415472.2	chr7	127970871:127970981:127973343:127973416:127975596:127975733,	127973344	127973416	127973349	127973349	Frame_Shift_Del	A	-	p.F338fs
LIHC	TCGA-DD-A1EG-01	RBM28	ENST00000223073.2	chr7	127977184:127977256:127978303:127978396:127978779:127978855,	127978304	127978396	127978357	127978357	Frame_Shift_Del	T	-	p.N163fs
LIHC	TCGA-DD-A1EG-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138133	128138133	Frame_Shift_Del	G	-	p.G221fs
LIHC	TCGA-DD-A1EG-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138141	128138141	Frame_Shift_Del	G	-	p.M222fs
LIHC	TCGA-DD-A1EG-01	CCDC136	ENST00000494552.1,ENST00000297788.4	chr7	128445901:128445955:128446290:128446449:128446741:128446912,	128446291	128446449	128446327	128446327	Frame_Shift_Del	A	-	p.K377fs
LIHC	TCGA-DD-A1EG-01	CCDC136	ENST00000464672.1,ENST00000494552.1,ENST00000297788.4	chr7	128446428:128446449:128446741:128446912:128447413:128447599,	128446742	128446912	128446803	128446803	Frame_Shift_Del	A	-	p.E437fs
LIHC	TCGA-DD-A1EG-01	TNPO3	ENST00000482320.1,ENST00000471166.1,ENST00000393245.1,ENST00000265388.5	chr7	128624221:128624313:128626782:128626974:128630014:128630154,	128626783	128626974	128626831	128626831	Frame_Shift_Del	G	-	p.L582fs
LIHC	TCGA-DD-A1EG-01	STRIP2	ENST00000435494.2,ENST00000249344.2	chr7	129093982:129094051:129094261:129094368:129095084:129095212,	129094262	129094368	129094353	129094353	Frame_Shift_Del	T	-	p.F231fs
LIHC	TCGA-DD-A1EG-01	ZC3HC1	ENST00000471022.1	chr7	129668741:129668869:129679303:129679387:129680790:129680941,129668741:129668869:129679303:129679387:129688813:129688984,	129679304	129679387	129679333	129679333	Frame_Shift_Del	A	-	p.F155fs
LIHC	TCGA-DD-A1EG-01	KLHDC10	ENST00000335420.5	chr7	129767243:129767291:129769276:129769416:129770376:129775560,	129769277	129769416	129769414	129769414	Frame_Shift_Del	C	-	p.P373fs
LIHC	TCGA-DD-A1EG-01	TMEM209	ENST00000462753.1,ENST00000397622.2,ENST00000336804.8,ENST00000473456.1	chr7	129825031:129825207:129832461:129832663:129841689:129841931,	129832462	129832663	129832502	129832502	Frame_Shift_Del	A	-	p.F245fs
LIHC	TCGA-DD-A1EG-01	CPA4	ENST00000486598.1,ENST00000490117.1,ENST00000222482.4,ENST00000492072.1,ENST00000470542.1	chr7	129939109:129939244:129940655:129940754:129944317:129944332,	129940656	129940754	129940731	129940731	Frame_Shift_Del	G	-	p.G121fs
LIHC	TCGA-DD-A1EG-01	CPA5	ENST00000495736.1	chr7	130003281:130003350:130007212:130007831:130008250:130008438,	130007213	130007831	130007805	130007805	Frame_Shift_Del	T	-	p.I366fs
LIHC	TCGA-DD-A1EG-01	CPA5	ENST00000485477.1,ENST00000393213.3,ENST00000461828.1,ENST00000474905.1,ENST00000466363.2,ENST00000355388.3	chr7	130007212:130007412:130007746:130007831:130008250:130008438,	130007747	130007831	130007805	130007805	Frame_Shift_Del	T	-	p.I366fs
LIHC	TCGA-DD-A1EG-01	PLXNA4	ENST00000359827.3,ENST00000321063.4	chr7	131912209:131912363:131913104:131913228:131925824:131925925,	131913105	131913228	131913180	131913180	Frame_Shift_Del	A	-	p.F551fs
LIHC	TCGA-DD-A1EG-01	AKR1B15	ENST00000423958.1,ENST00000457545.2	chr7	134254164:134254281:134256355:134256433:134260171:134260294,	134256356	134256433	134256406	134256406	Frame_Shift_Del	A	-	p.G162fs
LIHC	TCGA-DD-A1EG-01	AKR1B15	ENST00000423958.1,ENST00000457545.2	chr7	134256355:134256433:134260171:134260294:134260572:134260679,	134260172	134260294	134260214	134260214	Frame_Shift_Del	G	-	p.G186fs
LIHC	TCGA-DD-A1EG-01	CALD1	ENST00000436461.2,ENST00000443197.1,ENST00000543443.1,ENST00000424922.1,ENST00000417172.1,ENST00000482470.1,ENST00000361901.2	chr7	134613504:134613651:134617738:134618141:134625842:134625988,	134617739	134618141	134618011	134618011	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-DD-A1EG-01	CALD1	ENST00000361675.2	chr7	134617944:134618141:134620438:134620516:134625842:134625988,134618651:134618828:134620438:134620516:134625842:134625988,	134620439	134620516	134620476	134620476	Frame_Shift_Del	A	-	p.E220fs
LIHC	TCGA-DD-A1EG-01	AGBL3	ENST00000435976.2,ENST00000458078.1,ENST00000436302.2	chr7	134730224:134730325:134730549:134730662:134743919:134743986,	134730550	134730662	134730602	134730602	Frame_Shift_Del	A	-	p.E568fs
LIHC	TCGA-DD-A1EG-01	AGBL3	ENST00000436302.2	chr7	134766470:134766542:134800131:134800363:134819592:134820521,	134800132	134800363	134800216	134800216	Frame_Shift_Del	A	-	p.E787fs
LIHC	TCGA-DD-A1EG-01	CNOT4	ENST00000414802.1,ENST00000361528.4,ENST00000315544.5,ENST00000428680.2,ENST00000541284.1,ENST00000356162.4,ENST00000451834.1,ENST00000423368.2	chr7	135079051:135079167:135080385:135080635:135082920:135082978,	135080386	135080635	135080541	135080541	Frame_Shift_Del	G	-	p.P322fs
LIHC	TCGA-DD-A1EG-01	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135286117:135286255:135287552:135287742:135289087:135289208,	135287553	135287742	135287625	135287625	Frame_Shift_Del	T	-	p.L862fs
LIHC	TCGA-DD-A1EG-01	TRIM24	ENST00000343526.4,ENST00000464210.1,ENST00000497516.1,ENST00000415680.2	chr7	138199956:138200104:138203933:138204066:138209985:138210059,	138203934	138204066	138203966	138203966	Frame_Shift_Del	T	-	p.F222fs
LIHC	TCGA-DD-A1EG-01	TRIM24	ENST00000343526.4,ENST00000464210.1,ENST00000497516.1,ENST00000415680.2	chr7	138199956:138200104:138203933:138204066:138209985:138210059,	138203934	138204066	138203981	138203981	Frame_Shift_Del	A	-	p.K228fs
LIHC	TCGA-DD-A1EG-01	TRIM24	ENST00000343526.4	chr7	138235807:138235925:138239442:138239711:138252225:138252399,	138239443	138239711	138239591	138239591	Frame_Shift_Del	C	-	p.L470fs
LIHC	TCGA-DD-A1EG-01	TRIM24	ENST00000497516.1,ENST00000415680.2	chr7	138235807:138235925:138239442:138239609:138252225:138252399,	138239443	138239609	138239591	138239591	Frame_Shift_Del	C	-	p.L470fs
LIHC	TCGA-DD-A1EG-01	SVOPL	ENST00000419765.3	chr7	138344608:138344733:138347818:138347890:138356763:138356862,	138347819	138347890	138347879	138347879	Frame_Shift_Del	A	-	p.F95fs
LIHC	TCGA-DD-A1EG-01	ATP6V0A4	ENST00000353492.4,ENST00000393054.1,ENST00000310018.2	chr7	138391270:138391462:138394368:138394540:138400508:138400626,	138394369	138394540	138394452	138394452	Frame_Shift_Del	A	-	p.F782fs
LIHC	TCGA-DD-A1EG-01	KIAA1549	ENST00000422774.1	chr7	138522269:138522905:138524877:138525023:138529061:138529219,	138524878	138525023	138524926	138524926	Frame_Shift_Del	C	-	p.G1850fs
LIHC	TCGA-DD-A1EG-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764468	138764468	Frame_Shift_Del	A	-	p.S408fs
LIHC	TCGA-DD-A1EG-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764468	138764468	Frame_Shift_Del	A	-	p.S408fs
LIHC	TCGA-DD-A1EG-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764587	138764587	Frame_Shift_Del	T	-	p.N367fs
LIHC	TCGA-DD-A1EG-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764587	138764587	Frame_Shift_Del	T	-	p.N367fs
LIHC	TCGA-DD-A1EG-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764907	138764907	Frame_Shift_Del	A	-	p.F260fs
LIHC	TCGA-DD-A1EG-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764907	138764907	Frame_Shift_Del	A	-	p.F260fs
LIHC	TCGA-DD-A1EG-01	ZC3HAV1	ENST00000464606.1,ENST00000471652.1	chr7	138768525:138768778:138774369:138774505:138793769:138794100,	138774370	138774505	138774379	138774379	Frame_Shift_Del	A	-	p.F145fs
LIHC	TCGA-DD-A1EG-01	ADCK2	ENST00000072869.4,ENST00000476491.1,ENST00000483369.1	chr7	140386789:140387041:140389396:140389525:140390559:140390613,	140389397	140389525	140389459	140389459	Frame_Shift_Del	G	-	p.E540fs
LIHC	TCGA-DD-A1EG-01	AGK	ENST00000473884.1,ENST00000494688.1,ENST00000355413.4,ENST00000535825.1,ENST00000473247.1	chr7	141313945:141313978:141315270:141315365:141321531:141321590,	141315271	141315365	141315352	141315352	Frame_Shift_Del	G	-	p.G169fs
LIHC	TCGA-DD-A1EG-01	SSBP1	ENST00000469123.1,ENST00000498107.1,ENST00000489378.1,ENST00000465582.1,ENST00000467681.1,ENST00000463093.1,ENST00000265304.6,ENST00000481508.1,ENST00000484178.1,ENST00000465167.1	chr7	141441968:141442029:141443360:141443501:141443701:141443789,	141443361	141443501	141443425	141443425	Frame_Shift_Del	A	-	p.G50fs
LIHC	TCGA-DD-A1EG-01	CLEC5A	ENST00000546910.1	chr7	141635613:141635750:141643695:141643764:141645140:141645200,	141643696	141643764	141643737	141643737	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-DD-A1EG-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141799412:141799537:141800601:141800690:141802429:141802479,	141800602	141800690	141800654	141800654	Frame_Shift_Del	G	-	p.G2644fs
LIHC	TCGA-DD-A1EG-01	TRPV6	ENST00000359396.3,ENST00000487077.1	chr7	142573510:142573657:142574160:142574336:142574491:142574561,	142574161	142574336	142574295	142574295	Frame_Shift_Del	T	-	p.T210fs
LIHC	TCGA-DD-A1EG-01	KEL	ENST00000479768.2,ENST00000467543.1,ENST00000460479.1,ENST00000476829.1,ENST00000355265.2	chr7	142658014:142658191:142658446:142658588:142658881:142658955,	142658447	142658588	142658464	142658464	Frame_Shift_Del	A	-	p.F69fs
LIHC	TCGA-DD-A1EG-01	CASP2	ENST00000310447.5,ENST00000392925.2,ENST00000481483.1,ENST00000493642.1	chr7	142988710:142988783:142989392:142989560:142989709:142989791,	142989393	142989560	142989532	142989532	Frame_Shift_Del	T	-	p.L122fs
LIHC	TCGA-DD-A1EG-01	ZYX	ENST00000322764.5,ENST00000449630.1,ENST00000392910.2	chr7	143079517:143079540:143079685:143079778:143079893:143080018,	143079686	143079778	143079774	143079774	Frame_Shift_Del	C	-	p.A166fs
LIHC	TCGA-DD-A1EG-01	ZYX	ENST00000468083.1	chr7	143078667:143078872:143079340:143079778:143079893:143080018,	143079341	143079778	143079774	143079774	Frame_Shift_Del	C	-	p.A166fs
LIHC	TCGA-DD-A1EG-01	ZYX	ENST00000449423.2,ENST00000354434.4	chr7	143079340:143079540:143079893:143080415:143085311:143085432,	143079894	143080415	143080280	143080280	Frame_Shift_Del	G	-	p.L296fs
LIHC	TCGA-DD-A1EG-01	TPK1	ENST00000547966.1,ENST00000552881.1,ENST00000360057.3	chr7	144288516:144288662:144320258:144320354:144345899:144345972,	144320259	144320354	144320310	144320310	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A1EG-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148454074:148454242:148456395:148456446:148456639:148456730,	148456396	148456446	148456441	148456441	Frame_Shift_Del	A	-	p.K177fs
LIHC	TCGA-DD-A1EG-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148464710:148464841:148480874:148480982:148481062:148481169,	148480875	148480982	148480914	148480914	Frame_Shift_Del	A	-	p.K376fs
LIHC	TCGA-DD-A1EG-01	PDIA4	ENST00000286091.4	chr7	148709246:148709452:148711995:148712134:148716083:148716289,	148711996	148712134	148712006	148712006	Frame_Shift_Del	A	-	p.Y202fs
LIHC	TCGA-DD-A1EG-01	ZNF398	ENST00000420008.2,ENST00000426851.2,ENST00000491174.1,ENST00000540950.1,ENST00000475153.1,ENST00000335901.4	chr7	148851036:148851432:148863249:148863376:148863908:148864022,	148863250	148863376	148863302	148863302	Frame_Shift_Del	A	-	p.E158fs
LIHC	TCGA-DD-A1EG-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559371	149559371	Frame_Shift_Del	G	-	p.R1041fs
LIHC	TCGA-DD-A1EG-01	RARRES2	ENST00000466675.1,ENST00000482669.1,ENST00000223271.3	chr7	150035446:150035528:150036074:150036170:150037188:150037293,150035713:150035830:150036074:150036170:150037188:150037293,	150036075	150036170	150036096	150036096	Frame_Shift_Del	G	-	p.P118fs
LIHC	TCGA-DD-A1EG-01	TMEM176A	ENST00000475007.1,ENST00000475536.1	chr7	150500707:150500920:150501449:150501573:150501914:150502024,	150501450	150501573	150501516	150501516	Frame_Shift_Del	A	-	p.T208fs
LIHC	TCGA-DD-A1EG-01	TMEM176A	ENST00000004103.3,ENST00000461345.1,ENST00000484928.1,ENST00000494349.1	chr7	150500707:150500920:150501449:150501560:150501914:150502024,	150501450	150501560	150501516	150501516	Frame_Shift_Del	A	-	p.T208fs
LIHC	TCGA-DD-A1EG-01	NOS3	ENST00000467517.1,ENST00000297494.3,ENST00000484524.1	chr7	150692290:150692402:150693491:150693640:150693850:150694013,	150693492	150693640	150693569	150693569	Frame_Shift_Del	C	-	p.G116fs
LIHC	TCGA-DD-A1EG-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730775	150730775	Frame_Shift_Del	C	-	p.A60fs
LIHC	TCGA-DD-A1EG-01	ABCB8	ENST00000498578.1	chr7	150739047:150739195:150741057:150741233:150742295:150742496,	150741058	150741233	150741109	150741109	Frame_Shift_Del	C	-	p.A606fs
LIHC	TCGA-DD-A1EG-01	ABCB8	ENST00000482899.1,ENST00000542328.1,ENST00000358849.4,ENST00000482309.1,ENST00000297504.6,ENST00000466514.1,ENST00000356058.4	chr7	150739047:150739195:150741057:150741308:150742295:150742496,	150741058	150741308	150741109	150741109	Frame_Shift_Del	C	-	p.A606fs
LIHC	TCGA-DD-A1EG-01	ASIC3	ENST00000468325.1,ENST00000297512.8,ENST00000377904.4,ENST00000349064.5	chr7	150745972:150746506:150747192:150747343:150747567:150747695,	150747193	150747343	150747283	150747283	Frame_Shift_Del	G	-	p.G209fs
LIHC	TCGA-DD-A1EG-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150768158:150768384:150768476:150768692:150768775:150768924,	150768477	150768692	150768601	150768601	Frame_Shift_Del	C	-	p.F700fs
LIHC	TCGA-DD-A1EG-01	SMARCD3	ENST00000262188.8,ENST00000469154.1,ENST00000356800.2,ENST00000392811.2	chr7	150936709:150936832:150937197:150937333:150937510:150937608,	150937198	150937333	150937325	150937325	Frame_Shift_Del	G	-	p.P336fs
LIHC	TCGA-DD-A1EG-01	GALNT11	ENST00000430044.2	chr7	151722835:151722969:151791274:151791607:151797882:151798006,	151791275	151791607	151791353	151791353	Frame_Shift_Del	T	-	p.L14fs
LIHC	TCGA-DD-A1EG-01	KMT2C	ENST00000558084.1,ENST00000262189.6	chr7	151853289:151853431:151855947:151856157:151859201:151859249,	151855948	151856157	151856100	151856100	Frame_Shift_Del	T	-	p.T3840fs
LIHC	TCGA-DD-A1EG-01	PAXIP1	ENST00000473219.1,ENST00000404141.1,ENST00000475066.1,ENST00000397192.1,ENST00000457196.1	chr7	154760758:154760836:154767405:154768041:154774928:154775042,	154767406	154768041	154767939	154767939	Frame_Shift_Del	A	-	p.Y181fs
LIHC	TCGA-DD-A1EG-01	INSIG1	ENST00000340368.4	chr7	155090270:155090407:155094456:155094556:155099950:155100467,155093960:155094127:155094456:155094556:155099950:155100467,	155094457	155094556	155094506	155094506	Frame_Shift_Del	T	-	p.F253fs
LIHC	TCGA-DD-A1EG-01	LMBR1	ENST00000461469.1,ENST00000540390.1,ENST00000444719.1,ENST00000434278.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1	chr7	156556396:156556489:156589082:156589186:156619298:156619438,	156589083	156589186	156589160	156589160	Frame_Shift_Del	A	-	p.S116fs
LIHC	TCGA-DD-A1EG-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157387929:157388007:157396693:157396767:157414053:157414201,	157396694	157396767	157396753	157396753	Frame_Shift_Del	C	-	p.V758fs
LIHC	TCGA-DD-A1EG-01	ESYT2	ENST00000251527.5,ENST00000435514.2,ENST00000275418.7	chr7	158528193:158528299:158529738:158529870:158531713:158531812,	158529739	158529870	158529782	158529782	Frame_Shift_Del	T	-	p.T813fs
LIHC	TCGA-DD-A1EG-01	ESYT2	ENST00000251527.5,ENST00000435514.2,ENST00000275418.7	chr7	158528193:158528299:158529738:158529870:158531713:158531812,	158529739	158529870	158529834	158529834	Frame_Shift_Del	G	-	p.P795fs
LIHC	TCGA-DD-A1EG-01	VIPR2	ENST00000402066.1,ENST00000377633.3,ENST00000262178.2	chr7	158824518:158824560:158824628:158824758:158826903:158826950,	158824629	158824758	158824664	158824664	Frame_Shift_Del	G	-	p.Q356fs
LIHC	TCGA-DD-A1EG-01	SPAG11B	ENST00000297498.2	chr8	7308085:7308422:7308645:7308721:7309780:7309887,7308344:7308422:7308645:7308721:7320228:7320379,	7308646	7308721	7308660	7308660	Frame_Shift_Del	C	-	p.G92fs
LIHC	TCGA-DD-A1EG-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13357043	13357043	Frame_Shift_Del	C	-	p.E180fs
LIHC	TCGA-DD-A1EG-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16025996	16025996	Frame_Shift_Del	T	-	p.I201fs
LIHC	TCGA-DD-A1EG-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16026141	16026141	Frame_Shift_Del	A	-	p.F152fs
LIHC	TCGA-DD-A1EG-01	MICU3	ENST00000318063.5,ENST00000519044.1	chr8	16971601:16971710:16973951:16974109:16976215:16976284,	16973952	16974109	16974027	16974027	Frame_Shift_Del	T	-	p.I481fs
LIHC	TCGA-DD-A1EG-01	CNOT7	ENST00000519954.1,ENST00000361272.4,ENST00000523917.1,ENST00000519918.1	chr8	17092309:17092369:17094720:17094882:17100500:17100694,	17094721	17094882	17094743	17094743	Frame_Shift_Del	C	-	p.V151fs
LIHC	TCGA-DD-A1EG-01	MTUS1	ENST00000519263.1,ENST00000381869.3	chr8	17581180:17581342:17601112:17601308:17611225:17612520,17573275:17573410:17601112:17601308:17611225:17612520,	17601113	17601308	17601205	17601205	Frame_Shift_Del	G	-	p.P732fs
LIHC	TCGA-DD-A1EG-01	PCM1	ENST00000519253.1,ENST00000522275.1,ENST00000327578.8,ENST00000325083.8,ENST00000524226.1	chr8	17851061:17851128:17863771:17863906:17867055:17867174,	17863772	17863906	17863827	17863827	Frame_Shift_Del	T	-	p.V1628fs
LIHC	TCGA-DD-A1EG-01	SLC18A1	ENST00000437980.1,ENST00000276373.5,ENST00000381608.4,ENST00000519026.1,ENST00000265808.7,ENST00000440926.1	chr8	20005113:20005233:20005517:20005581:20007186:20007238,	20005518	20005581	20005547	20005547	Frame_Shift_Del	C	-	p.G394fs
LIHC	TCGA-DD-A1EG-01	DMTN	ENST00000358242.3,ENST00000523300.1,ENST00000517305.1,ENST00000523623.1,ENST00000265800.5,ENST00000443491.2,ENST00000520174.1,ENST00000415253.1,ENST00000517804.1,ENST00000517418.1,ENST00000519850.1,ENST00000432128.1,ENST00000519907.1,ENST00000523782.2,ENST00000523266.1,ENST00000381470.3	chr8	21925037:21925193:21926526:21926571:21926929:21926967,	21926527	21926571	21926552	21926552	Frame_Shift_Del	C	-	p.S92fs
LIHC	TCGA-DD-A1EG-01	HR	ENST00000312841.8	chr8	21972581:21973275:21973812:21973941:21976462:21976578,	21973813	21973941	21973838	21973838	Frame_Shift_Del	G	-	p.P1161fs
LIHC	TCGA-DD-A1EG-01	HR	ENST00000381418.4,ENST00000517699.1,ENST00000312841.8	chr8	21977631:21977686:21977854:21978020:21978228:21978471,	21977855	21978020	21977954	21977954	Frame_Shift_Del	C	-	p.A893fs
LIHC	TCGA-DD-A1EG-01	HR	ENST00000381418.4,ENST00000312841.8	chr8	21979125:21979207:21980005:21980121:21980302:21980364,	21980006	21980121	21980063	21980063	Frame_Shift_Del	C	-	p.G688fs
LIHC	TCGA-DD-A1EG-01	HR	ENST00000312841.8	chr8	21984998:21985342:21986071:21986723:21987940:21988194,	21986072	21986723	21986649	21986649	Frame_Shift_Del	G	-	p.P12fs
LIHC	TCGA-DD-A1EG-01	SFTPC	ENST00000524255.1	chr8	22020948:22021059:22021395:22021564:22021778:22021813,	22021396	22021564	22021491	22021491	Frame_Shift_Del	C	-	p.D171fs
LIHC	TCGA-DD-A1EG-01	SFTPC	ENST00000318561.3	chr8	22020948:22021059:22021395:22021572:22021778:22021813,	22021396	22021572	22021491	22021491	Frame_Shift_Del	C	-	p.D171fs
LIHC	TCGA-DD-A1EG-01	POLR3D	ENST00000397802.4,ENST00000306433.4,ENST00000517789.1	chr8	22105993:22106162:22106556:22106822:22107587:22107672,	22106557	22106822	22106722	22106722	Frame_Shift_Del	C	-	p.T274fs
LIHC	TCGA-DD-A1EG-01	POLR3D	ENST00000397802.4,ENST00000306433.4,ENST00000517789.1	chr8	22105993:22106162:22106556:22106822:22107587:22107672,	22106557	22106822	22106726	22106726	Frame_Shift_Del	C	-	p.L275fs
LIHC	TCGA-DD-A1EG-01	PDLIM2	ENST00000397761.2,ENST00000397760.4,ENST00000265810.4,ENST00000464275.1,ENST00000308354.7,ENST00000409417.1,ENST00000448520.1	chr8	22447108:22447254:22449063:22449181:22451245:22451801,	22449064	22449181	22449136	22449136	Frame_Shift_Del	C	-	p.T279fs
LIHC	TCGA-DD-A1EG-01	ADAM28	ENST00000397649.3,ENST00000520448.1,ENST00000265769.4	chr8	24209499:24209565:24211282:24211345:24211896:24211985,	24211283	24211345	24211304	24211304	Frame_Shift_Del	C	-	p.P757fs
LIHC	TCGA-DD-A1EG-01	DOCK5	ENST00000467709.2,ENST00000276440.7,ENST00000481728.2,ENST00000444569.1	chr8	25209246:25209342:25216478:25216577:25220562:25220657,	25216479	25216577	25216557	25216557	Frame_Shift_Del	A	-	p.K977fs
LIHC	TCGA-DD-A1EG-01	CHRNA2	ENST00000520933.2,ENST00000407991.1,ENST00000240132.2,ENST00000523529.1	chr8	27319119:27319271:27320495:27321510:27324745:27324855,	27320496	27321510	27321485	27321485	Frame_Shift_Del	G	-	p.H159fs
LIHC	TCGA-DD-A1EG-01	EPHX2	ENST00000380476.3,ENST00000521780.1,ENST00000521400.1,ENST00000520623.1	chr8	27364388:27364511:27369352:27369427:27373234:27373330,	27369353	27369427	27369424	27369424	Frame_Shift_Del	A	-	p.V244fs
LIHC	TCGA-DD-A1EG-01	CLU	ENST00000405140.3,ENST00000522299.1,ENST00000316403.10,ENST00000523500.1,ENST00000560366.1,ENST00000560566.1,ENST00000546343.1	chr8	27461882:27461912:27462440:27462852:27463870:27464041,	27462441	27462852	27462644	27462644	Frame_Shift_Del	A	-	p.F209fs
LIHC	TCGA-DD-A1EG-01	NUGGC	ENST00000341513.6,ENST00000413272.2	chr8	27922038:27922248:27925030:27925261:27925732:27925955,	27925031	27925261	27925075	27925075	Frame_Shift_Del	T	-	p.R223fs
LIHC	TCGA-DD-A1EG-01	FBXO16	ENST00000380254.2,ENST00000517673.1	chr8	28331288:28331324:28340864:28340979:28347702:28347741,	28340865	28340979	28340938	28340938	Frame_Shift_Del	T	-	p.N9fs
LIHC	TCGA-DD-A1EG-01	RAB11FIP1	ENST00000330843.4	chr8	37732032:37732840:37734626:37735069:37756588:37756972,	37734627	37735069	37734904	37734904	Frame_Shift_Del	C	-	p.G179fs
LIHC	TCGA-DD-A1EG-01	ADAM9	ENST00000487273.2	chr8	38940486:38940592:38947565:38947707:38948777:38948865,	38947566	38947707	38947638	38947638	Frame_Shift_Del	T	-	p.I714fs
LIHC	TCGA-DD-A1EG-01	ADAM32	ENST00000522506.1,ENST00000399831.3,ENST00000379907.4,ENST00000519315.1	chr8	38965291:38965352:38975604:38975684:38994175:38994237,	38975605	38975684	38975643	38975643	Frame_Shift_Del	A	-	p.K33fs
LIHC	TCGA-DD-A1EG-01	ADAM32	ENST00000437682.2,ENST00000518259.1,ENST00000379907.4,ENST00000519315.1	chr8	39009018:39009067:39018415:39018484:39022282:39022311,	39018416	39018484	39018476	39018476	Frame_Shift_Del	A	-	p.K196fs
LIHC	TCGA-DD-A1EG-01	AP3M2	ENST00000518421.1	chr8	42010602:42010623:42012133:42012478:42015458:42015603,42011995:42012054:42012133:42012478:42015458:42015603,	42012134	42012478	42012333	42012333	Frame_Shift_Del	A	-	p.E43fs
LIHC	TCGA-DD-A1EG-01	AP3M2	ENST00000174653.3	chr8	42010463:42010623:42012083:42012478:42015458:42015603,	42012084	42012478	42012333	42012333	Frame_Shift_Del	A	-	p.E43fs
LIHC	TCGA-DD-A1EG-01	POLB	ENST00000522610.1,ENST00000265421.4,ENST00000532157.1,ENST00000518925.1,ENST00000520008.1	chr8	42202477:42202537:42206533:42206608:42207524:42207583,	42206534	42206608	42206573	42206573	Frame_Shift_Del	T	-	p.F76fs
LIHC	TCGA-DD-A1EG-01	HOOK3	ENST00000527306.1,ENST00000307602.4	chr8	42821615:42821756:42823155:42823357:42828431:42828542,	42823156	42823357	42823205	42823205	Frame_Shift_Del	A	-	p.K326fs
LIHC	TCGA-DD-A1EG-01	SPIDR	ENST00000519362.1,ENST00000521214.1,ENST00000522321.1,ENST00000519401.1,ENST00000524141.1,ENST00000518692.1,ENST00000521550.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1	chr8	48614282:48614426:48614517:48614577:48625223:48625434,	48614518	48614577	48614567	48614567	Frame_Shift_Del	A	-	p.Q656fs
LIHC	TCGA-DD-A1EG-01	SPIDR	ENST00000519362.1,ENST00000521214.1,ENST00000522321.1,ENST00000519401.1,ENST00000518692.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1	chr8	48614517:48614577:48625223:48625434:48626050:48626095,	48625224	48625434	48625358	48625358	Frame_Shift_Del	G	-	p.L704fs
LIHC	TCGA-DD-A1EG-01	SPIDR	ENST00000519362.1,ENST00000521214.1,ENST00000522321.1,ENST00000519401.1,ENST00000518692.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1	chr8	48614517:48614577:48625223:48625434:48626050:48626095,	48625224	48625434	48625386	48625386	Frame_Shift_Del	G	-	p.G714fs
LIHC	TCGA-DD-A1EG-01	PRKDC	ENST00000523565.1,ENST00000314191.2,ENST00000521331.1	chr8	48691564:48691654:48694722:48694815:48694938:48695152,	48694723	48694815	48694762	48694762	Frame_Shift_Del	A	-	p.L3816fs
LIHC	TCGA-DD-A1EG-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48798504:48798708:48800107:48800266:48801078:48801211,	48800108	48800266	48800117	48800117	Frame_Shift_Del	A	-	p.F1520fs
LIHC	TCGA-DD-A1EG-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48798504:48798708:48800107:48800266:48801078:48801211,	48800108	48800266	48800123	48800123	Frame_Shift_Del	A	-	p.F1518fs
LIHC	TCGA-DD-A1EG-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48883070:48883436:48883900:48884028:48885416:48885624,	48883901	48884028	48883979	48883979	Frame_Shift_Del	A	-	p.K628fs
LIHC	TCGA-DD-A1EG-01	EFCAB1	ENST00000433756.1,ENST00000523092.1	chr8	49642322:49642430:49643098:49643203:49647652:49647791,	49643099	49643203	49643164	49643164	Frame_Shift_Del	T	-	p.N33fs
LIHC	TCGA-DD-A1EG-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1,ENST00000524004.1	chr8	51465609:51465739:51503438:51503477:51569468:51569585,	51503439	51503477	51503442	51503442	Frame_Shift_Del	A	-	p.K273fs
LIHC	TCGA-DD-A1EG-01	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52387531:52387701:52396202:52396274:52412258:52412330,	52396203	52396274	52396207	52396207	Frame_Shift_Del	T	-	p.R174fs
LIHC	TCGA-DD-A1EG-01	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52387531:52387701:52396202:52396274:52412258:52412330,	52396203	52396274	52396228	52396228	Frame_Shift_Del	A	-	p.S167fs
LIHC	TCGA-DD-A1EG-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54684548:54684727:54708206:54708399:54714358:54714428,	54708207	54708399	54708341	54708341	Frame_Shift_Del	A	-	p.S228fs
LIHC	TCGA-DD-A1EG-01	LYPLA1	ENST00000520896.1,ENST00000519926.1,ENST00000316963.3,ENST00000521898.1,ENST00000521352.1	chr8	54967661:54967693:54974813:54974884:54978307:54978373,54967661:54967693:54974813:54974884:54975887:54975935,	54974814	54974884	54974816	54974816	Frame_Shift_Del	T	-	p.N95fs
LIHC	TCGA-DD-A1EG-01	LYPLA1	ENST00000519926.1,ENST00000316963.3,ENST00000517297.1,ENST00000521352.1	chr8	54974813:54974884:54978307:54978373:55013467:55013499,54975887:54975935:54978307:54978373:55013467:55013499,	54978308	54978373	54978347	54978347	Frame_Shift_Del	C	-	p.G43fs
LIHC	TCGA-DD-A1EG-01	TMEM68	ENST00000520414.1,ENST00000334667.2,ENST00000522090.1,ENST00000434581.2	chr8	56668916:56668970:56675193:56675587:56676494:56676539,	56675194	56675587	56675375	56675375	Frame_Shift_Del	A	-	p.F48fs
LIHC	TCGA-DD-A1EG-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56698977	56698977	Frame_Shift_Del	A	-	p.K175fs
LIHC	TCGA-DD-A1EG-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56699104	56699104	Frame_Shift_Del	A	-	p.E216fs
LIHC	TCGA-DD-A1EG-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56699231	56699231	Frame_Shift_Del	G	-	p.Q258fs
LIHC	TCGA-DD-A1EG-01	PLAG1	ENST00000522009.1,ENST00000429357.2,ENST00000316981.3	chr8	57078801:57080062:57080586:57080945:57083649:57083748,	57080587	57080945	57080731	57080731	Frame_Shift_Del	T	-	p.N33fs
LIHC	TCGA-DD-A1EG-01	SDR16C5	ENST00000396721.2,ENST00000303749.3	chr8	57213859:57214132:57218155:57218281:57219234:57219379,	57218156	57218281	57218232	57218232	Frame_Shift_Del	T	-	p.I210fs
LIHC	TCGA-DD-A1EG-01	UBXN2B	ENST00000520732.1	chr8	59343077:59343228:59345718:59345802:59346953:59347063,59329488:59329512:59345718:59345802:59346953:59347063,	59345719	59345802	59345754	59345754	Frame_Shift_Del	T	-	p.S125fs
LIHC	TCGA-DD-A1EG-01	NSMAF	ENST00000519858.1,ENST00000038176.3,ENST00000427130.2	chr8	59515768:59515945:59518485:59518594:59520327:59520399,	59518486	59518594	59518504	59518504	Frame_Shift_Del	A	-	p.Y284fs
LIHC	TCGA-DD-A1EG-01	CHD7	ENST00000525508.1,ENST00000423902.2	chr8	61655590:61655656:61693558:61693989:61707544:61707686,	61693559	61693989	61693911	61693911	Frame_Shift_Del	C	-	p.A673fs
LIHC	TCGA-DD-A1EG-01	CHD7	ENST00000423902.2	chr8	61769415:61769447:61773462:61773684:61774754:61774895,	61773463	61773684	61773506	61773506	Frame_Shift_Del	C	-	p.T2551fs
LIHC	TCGA-DD-A1EG-01	ASPH	ENST00000379454.4,ENST00000541428.1	chr8	62438535:62438671:62460629:62460767:62465589:62465679,	62460630	62460767	62460657	62460657	Frame_Shift_Del	T	-	p.K550fs
LIHC	TCGA-DD-A1EG-01	ASPH	ENST00000379454.4,ENST00000541428.1	chr8	62460629:62460767:62465589:62465679:62468482:62468581,	62465590	62465679	62465634	62465634	Frame_Shift_Del	A	-	p.Y499fs
LIHC	TCGA-DD-A1EG-01	YTHDF3	ENST00000524135.1,ENST00000521674.1,ENST00000520640.1,ENST00000517303.1,ENST00000542911.2	chr8	64087895:64087975:64098705:64100303:64122240:64122663,	64098706	64100303	64099245	64099245	Frame_Shift_Del	C	-	p.P226fs
LIHC	TCGA-DD-A1EG-01	MTFR1	ENST00000522239.1	chr8	66582107:66582253:66594562:66594686:66605878:66605994,	66594563	66594686	66594636	66594636	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-DD-A1EG-01	MTFR1	ENST00000424808.2,ENST00000262146.4	chr8	66582215:66582253:66594587:66594686:66605878:66605994,	66594588	66594686	66594636	66594636	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-DD-A1EG-01	TRIM55	ENST00000315962.4	chr8	67064614:67064862:67066281:67066569:67086705:67086827,	67066282	67066569	67066366	67066366	Frame_Shift_Del	T	-	p.F441fs
LIHC	TCGA-DD-A1EG-01	ADHFE1	ENST00000396623.3,ENST00000496501.1,ENST00000415254.1,ENST00000379385.4,ENST00000276576.7,ENST00000426810.1,ENST00000424777.2	chr8	67356828:67356983:67359498:67359576:67361099:67361205,67357452:67357649:67359498:67359576:67361099:67361205,	67359499	67359576	67359534	67359534	Frame_Shift_Del	G	-	p.G196fs
LIHC	TCGA-DD-A1EG-01	MCMDC2	ENST00000541540.1,ENST00000492775.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3,ENST00000415737.1	chr8	67791049:67791154:67793083:67793209:67795991:67796229,	67793084	67793209	67793181	67793181	Frame_Shift_Del	A	-	p.A269fs
LIHC	TCGA-DD-A1EG-01	MCMDC2	ENST00000541540.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3,ENST00000415737.1	chr8	67793083:67793209:67795991:67796229:67803099:67803305,	67795992	67796229	67796131	67796131	Frame_Shift_Del	T	-	p.C325fs
LIHC	TCGA-DD-A1EG-01	PPP1R42	ENST00000522909.1,ENST00000324682.5	chr8	67925192:67925331:67926660:67926827:67929853:67930066,	67926661	67926827	67926715	67926715	Frame_Shift_Del	T	-	p.N82fs
LIHC	TCGA-DD-A1EG-01	CSPP1	ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68102884:68102994:68105698:68105837:68107616:68107753,	68105699	68105837	68105740	68105740	Frame_Shift_Del	A	-	p.L1119fs
LIHC	TCGA-DD-A1EG-01	ARFGEF1	ENST00000262215.3	chr8	68208665:68208845:68211443:68211590:68213458:68213615,	68211444	68211590	68211528	68211528	Frame_Shift_Del	T	-	p.K125fs
LIHC	TCGA-DD-A1EG-01	PREX2	ENST00000288368.4	chr8	69058443:69058587:69069556:69069671:69103956:69104023,	69069557	69069671	69069649	69069649	Frame_Shift_Del	A	-	p.K1442fs
LIHC	TCGA-DD-A1EG-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71082436:71082614:71086990:71087094:71126137:71126310,	71086991	71087094	71087031	71087031	Frame_Shift_Del	C	-	p.G108fs
LIHC	TCGA-DD-A1EG-01	STAU2	ENST00000521727.1,ENST00000521210.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000518767.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521451.1,ENST00000523558.1	chr8	74507400:74507532:74515960:74516098:74525978:74526191,	74515961	74516098	74516002	74516002	Frame_Shift_Del	A	-	p.S298fs
LIHC	TCGA-DD-A1EG-01	STAU2	ENST00000521727.1,ENST00000521210.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000518767.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521451.1,ENST00000523558.1	chr8	74507400:74507532:74515960:74516098:74525978:74526191,	74515961	74516098	74516056	74516056	Frame_Shift_Del	G	-	p.L280fs
LIHC	TCGA-DD-A1EG-01	STAU2	ENST00000521451.1	chr8	74526161:74526191:74527909:74528042:74529526:74529686,	74527910	74528042	74527913	74527913	Frame_Shift_Del	A	-	p.F193fs
LIHC	TCGA-DD-A1EG-01	STAU2	ENST00000521727.1,ENST00000521210.1,ENST00000518981.1,ENST00000519961.1,ENST00000521293.1,ENST00000522695.1,ENST00000518767.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000523558.1,ENST00000521447.1	chr8	74526161:74526191:74527909:74528017:74529526:74529686,	74527910	74528017	74527913	74527913	Frame_Shift_Del	A	-	p.F193fs
LIHC	TCGA-DD-A1EG-01	STAU2	ENST00000521727.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521447.1	chr8	74529526:74529686:74585341:74585477:74600888:74601048,	74585342	74585477	74585429	74585429	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A1EG-01	UBE2W	ENST00000453587.2,ENST00000419880.3,ENST00000517608.1,ENST00000602593.1,ENST00000602969.1	chr8	74722708:74722864:74737381:74737484:74742615:74742707,	74737382	74737484	74737412	74737412	Frame_Shift_Del	A	-	p.F89fs
LIHC	TCGA-DD-A1EG-01	UBE2W	ENST00000453587.2,ENST00000419880.3,ENST00000517608.1,ENST00000602593.1,ENST00000602969.1	chr8	74722708:74722864:74737381:74737484:74742615:74742707,	74737382	74737484	74737415	74737415	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-DD-A1EG-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75156988	75156988	Frame_Shift_Del	G	-	p.Q561fs
LIHC	TCGA-DD-A1EG-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75157036	75157036	Frame_Shift_Del	C	-	p.E545fs
LIHC	TCGA-DD-A1EG-01	TPD52	ENST00000518937.1,ENST00000521241.2,ENST00000517462.2,ENST00000523753.1,ENST00000520527.1,ENST00000519303.2	chr8	80954854:80954903:80962679:80962706:80963761:80963863,80954854:80954903:80962679:80962706:80963486:80963636,80956404:80956443:80962679:80962706:80963761:80963863,	80962680	80962706	80962693	80962693	Frame_Shift_Del	A	-	p.S134fs
LIHC	TCGA-DD-A1EG-01	TPD52	ENST00000517445.1	chr8	80956401:80956443:80962580:80962706:80963761:80963863,	80962581	80962706	80962693	80962693	Frame_Shift_Del	A	-	p.S134fs
LIHC	TCGA-DD-A1EG-01	SNX16	ENST00000523757.1	chr8	82751915:82751986:82752073:82752317:82754356:82754418,	82752074	82752317	82752165	82752165	Frame_Shift_Del	A	-	p.F19fs
LIHC	TCGA-DD-A1EG-01	RALYL	ENST00000522455.1,ENST00000521695.1,ENST00000517638.1,ENST00000523850.1,ENST00000521268.1	chr8	85717004:85717037:85762214:85762262:85774530:85774688,	85762215	85762262	85762225	85762225	Frame_Shift_Del	T	-	p.F126fs
LIHC	TCGA-DD-A1EG-01	LRRCC1	ENST00000523669.1	chr8	86022349:86022415:86025166:86025334:86037026:86037174,	86025167	86025334	86025290	86025290	Frame_Shift_Del	T	-	p.I147fs
LIHC	TCGA-DD-A1EG-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041424	86041424	Frame_Shift_Del	T	-	p.I459fs
LIHC	TCGA-DD-A1EG-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041489	86041489	Frame_Shift_Del	A	-	p.K482fs
LIHC	TCGA-DD-A1EG-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041562	86041562	Frame_Shift_Del	A	-	p.E505fs
LIHC	TCGA-DD-A1EG-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041574	86041574	Frame_Shift_Del	A	-	p.E509fs
LIHC	TCGA-DD-A1EG-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86043994:86044196:86047081:86047267:86048023:86048198,	86047082	86047267	86047216	86047216	Frame_Shift_Del	A	-	p.T681fs
LIHC	TCGA-DD-A1EG-01	CA13	ENST00000321764.3	chr8	86157755:86158094:86162968:86163166:86171649:86171768,	86162969	86163166	86163103	86163103	Frame_Shift_Del	A	-	p.K58fs
LIHC	TCGA-DD-A1EG-01	WWP1	ENST00000341922.2,ENST00000349423.2,ENST00000265428.4,ENST00000517970.1	chr8	87460601:87460742:87464787:87464908:87470149:87470250,	87464788	87464908	87464895	87464895	Frame_Shift_Del	A	-	p.E794fs
LIHC	TCGA-DD-A1EG-01	CPNE3	ENST00000517391.1,ENST00000521271.1,ENST00000198765.4	chr8	87557024:87557066:87558822:87558909:87559938:87559998,	87558823	87558909	87558862	87558862	Frame_Shift_Del	A	-	p.K259fs
LIHC	TCGA-DD-A1EG-01	RIPK2	ENST00000220751.4,ENST00000522965.1,ENST00000540020.1	chr8	90792315:90792388:90796277:90796367:90798820:90798914,	90796278	90796367	90796320	90796320	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-DD-A1EG-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90955586:90955594:90958367:90958523:90960051:90960120,	90958368	90958523	90958387	90958387	Frame_Shift_Del	T	-	p.N684fs
LIHC	TCGA-DD-A1EG-01	NBN	ENST00000517772.1,ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90982747:90982785:90983400:90983518:90990447:90990551,	90983401	90983518	90983427	90983427	Frame_Shift_Del	T	-	p.T226fs
LIHC	TCGA-DD-A1EG-01	NBN	ENST00000517772.1,ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90982747:90982785:90983400:90983518:90990447:90990551,	90983401	90983518	90983477	90983477	Frame_Shift_Del	T	-	p.N209fs
LIHC	TCGA-DD-A1EG-01	NBN	ENST00000265433.3,ENST00000409330.1	chr8	90992961:90993121:90993602:90993751:90994180:90994230,90992961:90993121:90993602:90993751:90994949:90995083,	90993603	90993751	90993640	90993640	Frame_Shift_Del	C	-	p.D95fs
LIHC	TCGA-DD-A1EG-01	NBN	ENST00000519426.1	chr8	90993602:90993751:90994949:90995083:90996752:90996847,	90994950	90995083	90995032	90995032	Frame_Shift_Del	T	-	p.N30fs
LIHC	TCGA-DD-A1EG-01	DECR1	ENST00000517314.1,ENST00000520227.1,ENST00000220764.2,ENST00000523447.1,ENST00000517761.1,ENST00000522161.1,ENST00000519007.1,ENST00000519410.1	chr8	91013744:91013789:91031136:91031194:91031313:91031400,91029529:91029554:91031136:91031194:91031313:91031400,	91031137	91031194	91031148	91031148	Frame_Shift_Del	T	-	p.V86fs
LIHC	TCGA-DD-A1EG-01	DECR1	ENST00000518725.1	chr8	91029529:91029554:91031043:91031194:91031313:91031400,	91031044	91031194	91031148	91031148	Frame_Shift_Del	T	-	p.V86fs
LIHC	TCGA-DD-A1EG-01	DECR1	ENST00000517314.1,ENST00000520227.1,ENST00000220764.2,ENST00000523447.1,ENST00000517761.1,ENST00000522161.1,ENST00000519007.1,ENST00000519410.1	chr8	91013744:91013789:91031136:91031194:91031313:91031400,91029529:91029554:91031136:91031194:91031313:91031400,	91031137	91031194	91031181	91031181	Frame_Shift_Del	A	-	p.Q97fs
LIHC	TCGA-DD-A1EG-01	DECR1	ENST00000518725.1	chr8	91029529:91029554:91031043:91031194:91031313:91031400,	91031044	91031194	91031181	91031181	Frame_Shift_Del	A	-	p.Q97fs
LIHC	TCGA-DD-A1EG-01	LRRC69	ENST00000520099.1,ENST00000448384.2	chr8	92145337:92145533:92147895:92147967:92201749:92201851,	92147896	92147967	92147911	92147911	Frame_Shift_Del	A	-	p.K200fs
LIHC	TCGA-DD-A1EG-01	SLC26A7	ENST00000522181.1	chr8	92330443:92330608:92346522:92346675:92352631:92352779,	92346523	92346675	92346653	92346653	Frame_Shift_Del	T	-	p.V258fs
LIHC	TCGA-DD-A1EG-01	RUNX1T1	ENST00000521553.1,ENST00000518844.1,ENST00000517792.1,ENST00000265814.3,ENST00000519847.1,ENST00000422361.2,ENST00000436581.2,ENST00000518992.1,ENST00000521054.1,ENST00000520724.1,ENST00000396218.1,ENST00000523290.1,ENST00000360348.2,ENST00000523629.1	chr8	93023315:93023319:93026806:93027048:93029453:93029591,	93026807	93027048	93026993	93026993	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A1EG-01	RUNX1T1	ENST00000521553.1,ENST00000518844.1,ENST00000517792.1,ENST00000265814.3,ENST00000519847.1,ENST00000422361.2,ENST00000436581.2,ENST00000518992.1,ENST00000521054.1,ENST00000520724.1,ENST00000396218.1,ENST00000523290.1,ENST00000360348.2,ENST00000523629.1	chr8	93023315:93023319:93026806:93027048:93029453:93029591,	93026807	93027048	93026997	93026997	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A1EG-01	RUNX1T1	ENST00000521553.1,ENST00000518844.1,ENST00000517792.1,ENST00000265814.3,ENST00000519847.1,ENST00000422361.2,ENST00000436581.2,ENST00000518992.1,ENST00000521054.1,ENST00000520724.1,ENST00000396218.1,ENST00000523290.1,ENST00000360348.2,ENST00000523629.1	chr8	93023315:93023319:93026806:93027048:93029453:93029591,	93026807	93027048	93027002	93027002	Frame_Shift_Del	G	-	p.P91fs
LIHC	TCGA-DD-A1EG-01	TMEM67	ENST00000498673.1	chr8	94767247:94767365:94768005:94768136:94770710:94770804,	94768006	94768136	94768053	94768053	Frame_Shift_Del	G	-	p.G92fs
LIHC	TCGA-DD-A1EG-01	TMEM67	ENST00000474944.1,ENST00000323130.3,ENST00000452276.1,ENST00000453321.3,ENST00000453906.1,ENST00000475305.1,ENST00000521517.1,ENST00000455946.1	chr8	94767247:94767365:94768005:94768094:94770710:94770804,	94768006	94768094	94768053	94768053	Frame_Shift_Del	G	-	p.G92fs
LIHC	TCGA-DD-A1EG-01	TMEM67	ENST00000409623.3,ENST00000323130.3,ENST00000453321.3,ENST00000519845.1	chr8	94821284:94821389:94822012:94822115:94827532:94827675,	94822013	94822115	94822095	94822095	Frame_Shift_Del	A	-	p.E915fs
LIHC	TCGA-DD-A1EG-01	CDH17	ENST00000027335.3,ENST00000450165.2,ENST00000441892.2	chr8	95143103:95143220:95158155:95158395:95160971:95161102,	95158156	95158395	95158162	95158162	Frame_Shift_Del	T	-	p.I721fs
LIHC	TCGA-DD-A1EG-01	RAD54B	ENST00000523839.1,ENST00000336148.5	chr8	95423348:95423543:95470495:95470664:95479632:95479783,	95470496	95470664	95470606	95470606	Frame_Shift_Del	A	-	p.L65fs
LIHC	TCGA-DD-A1EG-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686682	95686682	Frame_Shift_Del	G	-	p.M533fs
LIHC	TCGA-DD-A1EG-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686682	95686682	Frame_Shift_Del	G	-	p.M533fs
LIHC	TCGA-DD-A1EG-01	DPY19L4	ENST00000414645.2	chr8	95780622:95780781:95782679:95782799:95789893:95790014,	95782680	95782799	95782739	95782739	Frame_Shift_Del	A	-	p.E465fs
LIHC	TCGA-DD-A1EG-01	CCNE2	ENST00000396133.3,ENST00000308108.4,ENST00000520509.1,ENST00000519889.1	chr8	95902642:95902778:95905045:95905197:95906118:95906172,	95905046	95905197	95905075	95905075	Frame_Shift_Del	A	-	p.F96fs
LIHC	TCGA-DD-A1EG-01	NDUFAF6	ENST00000520757.1,ENST00000396124.4,ENST00000286687.4	chr8	96037295:96037433:96044222:96044322:96047681:96047804,	96044223	96044322	96044239	96044239	Frame_Shift_Del	G	-	p.G72fs
LIHC	TCGA-DD-A1EG-01	NDUFAF6	ENST00000517976.1,ENST00000520632.1,ENST00000454358.2	chr8	96037295:96037433:96044222:96044326:96047681:96047804,	96044223	96044326	96044239	96044239	Frame_Shift_Del	G	-	p.G72fs
LIHC	TCGA-DD-A1EG-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047685	96047685	Frame_Shift_Del	A	-	p.K9fs
LIHC	TCGA-DD-A1EG-01	MTDH	ENST00000336273.3,ENST00000519934.1	chr8	98699656:98699833:98701265:98701331:98703179:98703266,	98701266	98701331	98701309	98701309	Frame_Shift_Del	A	-	p.G263fs
LIHC	TCGA-DD-A1EG-01	MTDH	ENST00000519934.1	chr8	98711981:98712080:98718853:98718978:98725889:98725997,98703358:98703416:98718853:98718978:98725889:98725997,	98718854	98718978	98718929	98718929	Frame_Shift_Del	A	-	p.E408fs
LIHC	TCGA-DD-A1EG-01	MTDH	ENST00000521933.1	chr8	98731276:98731417:98735106:98735263:98736827:98736845,98725889:98725997:98735106:98735263:98736827:98736845,	98735107	98735263	98735160	98735160	Frame_Shift_Del	A	-	p.S525fs
LIHC	TCGA-DD-A1EG-01	MATN2	ENST00000519585.1,ENST00000521041.1,ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000523490.1,ENST00000522270.1	chr8	98973709:98973758:98991113:98991236:99006707:99006824,	98991114	98991236	98991221	98991221	Frame_Shift_Del	A	-	p.K357fs
LIHC	TCGA-DD-A1EG-01	POP1	ENST00000401707.2	chr8	99129539:99129618:99135563:99135707:99139822:99139990,	99135564	99135707	99135586	99135586	Frame_Shift_Del	A	-	p.R7fs
LIHC	TCGA-DD-A1EG-01	STK3	ENST00000523601.1,ENST00000419617.2	chr8	99466922:99468228:99538969:99539145:99560196:99560389,	99538970	99539145	99539012	99539012	Frame_Shift_Del	A	-	p.F453fs
LIHC	TCGA-DD-A1EG-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100865678:100866484:100871531:100871708:100874003:100874174,	100871532	100871708	100871541	100871541	Frame_Shift_Del	T	-	p.V3651fs
LIHC	TCGA-DD-A1EG-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100874003:100874174:100880516:100880693:100883012:100883115,	100880517	100880693	100880627	100880627	Frame_Shift_Del	G	-	p.G3801fs
LIHC	TCGA-DD-A1EG-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	101020724:101020797:101051158:101051260:101052189:101052315,	101051159	101051260	101051177	101051177	Frame_Shift_Del	T	-	p.K716fs
LIHC	TCGA-DD-A1EG-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075899	101075899	Frame_Shift_Del	A	-	p.L366fs
LIHC	TCGA-DD-A1EG-01	SPAG1	ENST00000251809.3	chr8	101170262:101170346:101174506:101174648:101178041:101178201,	101174507	101174648	101174537	101174537	Frame_Shift_Del	G	-	p.W10fs
LIHC	TCGA-DD-A1EG-01	SPAG1	ENST00000251809.3	chr8	101170262:101170346:101174506:101174648:101178041:101178201,	101174507	101174648	101174553	101174553	Frame_Shift_Del	A	-	p.T15fs
LIHC	TCGA-DD-A1EG-01	SPAG1	ENST00000520643.1,ENST00000251809.3,ENST00000520508.1,ENST00000388798.2	chr8	101178041:101178201:101190043:101190169:101195602:101195664,	101190044	101190169	101190062	101190062	Frame_Shift_Del	A	-	p.K108fs
LIHC	TCGA-DD-A1EG-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300216	101300216	Frame_Shift_Del	T	-	p.R64fs
LIHC	TCGA-DD-A1EG-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300230	101300230	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A1EG-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101585892:101586188:101589246:101589303:101596338:101596388,	101589247	101589303	101589276	101589276	Frame_Shift_Del	T	-	p.S400fs
LIHC	TCGA-DD-A1EG-01	PABPC1	ENST00000318607.5,ENST00000522658.1,ENST00000520868.1,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101716524:101716618:101717153:101717284:101717816:101717901,	101717154	101717284	101717231	101717231	Frame_Shift_Del	T	-	p.I581fs
LIHC	TCGA-DD-A1EG-01	PABPC1	ENST00000517990.1	chr8	101716524:101716618:101717153:101717257:101717816:101717901,	101717154	101717257	101717231	101717231	Frame_Shift_Del	T	-	p.I581fs
LIHC	TCGA-DD-A1EG-01	GRHL2	ENST00000395927.1,ENST00000251808.3	chr8	102564942:102565010:102570646:102571040:102582566:102582622,	102570647	102571040	102570897	102570897	Frame_Shift_Del	G	-	p.G179fs
LIHC	TCGA-DD-A1EG-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103339969:103340124:103341317:103341428:103341510:103341627,	103341318	103341428	103341390	103341390	Frame_Shift_Del	C	-	p.G418fs
LIHC	TCGA-DD-A1EG-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104336742	104336742	Frame_Shift_Del	T	-	p.T136fs
LIHC	TCGA-DD-A1EG-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104336905	104336905	Frame_Shift_Del	A	-	p.K191fs
LIHC	TCGA-DD-A1EG-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104336956	104336956	Frame_Shift_Del	T	-	p.F208fs
LIHC	TCGA-DD-A1EG-01	SLC25A32	ENST00000297578.4	chr8	104414168:104414282:104415391:104415552:104419861:104420012,104414168:104414282:104415391:104415552:104417003:104417089,	104415392	104415552	104415468	104415468	Frame_Shift_Del	G	-	p.P159fs
LIHC	TCGA-DD-A1EG-01	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367351	105367351	Frame_Shift_Del	A	-	p.K427fs
LIHC	TCGA-DD-A1EG-01	OXR1	ENST00000452423.2,ENST00000519415.2	chr8	107726050:107726213:107752570:107752723:107754449:107754545,	107752571	107752723	107752652	107752652	Frame_Shift_Del	A	-	p.K722fs
LIHC	TCGA-DD-A1EG-01	NUDCD1	ENST00000239690.4,ENST00000427660.2	chr8	110305572:110305753:110308612:110308798:110334537:110334692,	110308613	110308798	110308781	110308781	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-DD-A1EG-01	PKHD1L1	ENST00000378402.5	chr8	110420277:110420435:110422093:110422207:110424493:110424643,	110422094	110422207	110422198	110422198	Frame_Shift_Del	T	-	p.D692fs
LIHC	TCGA-DD-A1EG-01	SYBU	ENST00000419099.1,ENST00000446070.2,ENST00000528647.1,ENST00000533895.1,ENST00000529190.1,ENST00000533821.1,ENST00000534184.1	chr8	110631212:110631268:110654956:110655158:110656864:110656945,	110654957	110655158	110655040	110655040	Frame_Shift_Del	A	-	p.F46fs
LIHC	TCGA-DD-A1EG-01	SYBU	ENST00000433638.1,ENST00000533171.1,ENST00000408908.2,ENST00000422135.1,ENST00000276646.9,ENST00000440310.1,ENST00000534501.1,ENST00000528716.1,ENST00000531284.1,ENST00000524720.1	chr8	110631212:110631268:110654956:110655161:110656864:110656945,	110654957	110655161	110655040	110655040	Frame_Shift_Del	A	-	p.F46fs
LIHC	TCGA-DD-A1EG-01	SYBU	ENST00000424158.2	chr8	110631212:110631268:110654956:110655176:110656864:110656945,	110654957	110655176	110655040	110655040	Frame_Shift_Del	A	-	p.F46fs
LIHC	TCGA-DD-A1EG-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616430	116616430	Frame_Shift_Del	T	-	p.K589fs
LIHC	TCGA-DD-A1EG-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616637	116616637	Frame_Shift_Del	T	-	p.K521fs
LIHC	TCGA-DD-A1EG-01	EIF3H	ENST00000276682.4,ENST00000521861.1,ENST00000520289.1,ENST00000518949.1	chr8	117661044:117661165:117668094:117668244:117669453:117669553,	117668095	117668244	117668235	117668235	Frame_Shift_Del	T	-	p.K189fs
LIHC	TCGA-DD-A1EG-01	EIF3H	ENST00000276682.4,ENST00000521861.1,ENST00000518995.1,ENST00000518949.1	chr8	117668143:117668244:117669453:117669553:117671051:117671219,	117669454	117669553	117669472	117669472	Frame_Shift_Del	T	-	p.K180fs
LIHC	TCGA-DD-A1EG-01	RAD21	ENST00000523547.1,ENST00000297338.2,ENST00000517485.1,ENST00000520992.1	chr8	117869527:117869712:117870590:117870697:117874079:117874179,	117870591	117870697	117870622	117870622	Frame_Shift_Del	C	-	p.G150fs
LIHC	TCGA-DD-A1EG-01	SLC30A8	ENST00000456015.2,ENST00000427715.2,ENST00000521243.1,ENST00000519688.1	chr8	118159208:118159392:118165182:118165329:118169929:118170083,	118165183	118165329	118165235	118165235	Frame_Shift_Del	A	-	p.L59fs
LIHC	TCGA-DD-A1EG-01	MED30	ENST00000297347.3	chr8	118540889:118541048:118542961:118543066:118552121:118552217,	118542962	118543066	118543024	118543024	Frame_Shift_Del	T	-	p.R133fs
LIHC	TCGA-DD-A1EG-01	SAMD12	ENST00000314727.4,ENST00000526765.1,ENST00000524796.1,ENST00000409003.4,ENST00000526328.1	chr8	119391798:119391939:119452070:119452200:119592953:119593121,	119452071	119452200	119452173	119452173	Frame_Shift_Del	C	-	p.V74fs
LIHC	TCGA-DD-A1EG-01	SAMD12	ENST00000453675.2	chr8	119391798:119391939:119452100:119452200:119592953:119593121,	119452101	119452200	119452173	119452173	Frame_Shift_Del	C	-	p.V74fs
LIHC	TCGA-DD-A1EG-01	SAMD12	ENST00000314727.4,ENST00000526328.1	chr8	119452100:119452200:119592953:119593132:119634042:119634132,	119592954	119593132	119593105	119593105	Frame_Shift_Del	C	-	p.G14fs
LIHC	TCGA-DD-A1EG-01	TNFRSF11B	ENST00000297350.4	chr8	119938748:119938957:119940976:119941168:119945169:119945539,	119940977	119941168	119940987	119940987	Frame_Shift_Del	T	-	p.K194fs
LIHC	TCGA-DD-A1EG-01	MAL2	ENST00000276681.6,ENST00000522112.2,ENST00000521748.1,ENST00000531508.1,ENST00000534619.1	chr8	120233826:120233997:120252404:120252560:120255656:120255762,	120252405	120252560	120252450	120252450	Frame_Shift_Del	T	-	p.F117fs
LIHC	TCGA-DD-A1EG-01	ENPP2	ENST00000427067.2,ENST00000522826.1	chr8	120582944:120583081:120584415:120584490:120592355:120592407,	120584416	120584490	120584445	120584445	Frame_Shift_Del	T	-	p.N605fs
LIHC	TCGA-DD-A1EG-01	ENPP2	ENST00000520066.1	chr8	120633633:120633759:120638858:120638960:120650664:120650767,	120638859	120638960	120638944	120638944	Frame_Shift_Del	G	-	p.P47fs
LIHC	TCGA-DD-A1EG-01	ENPP2	ENST00000427067.2,ENST00000259486.6,ENST00000518958.1,ENST00000522826.1,ENST00000075322.6	chr8	120633633:120633759:120638804:120638960:120650664:120650767,	120638805	120638960	120638944	120638944	Frame_Shift_Del	G	-	p.P47fs
LIHC	TCGA-DD-A1EG-01	TAF2	ENST00000378164.2	chr8	120756527:120756633:120758944:120759174:120768245:120768355,	120758945	120759174	120759116	120759116	Frame_Shift_Del	A	-	p.F979fs
LIHC	TCGA-DD-A1EG-01	DSCC1	ENST00000313655.4	chr8	120859241:120859320:120862621:120862756:120865286:120865455,	120862622	120862756	120862683	120862683	Frame_Shift_Del	A	-	p.L142fs
LIHC	TCGA-DD-A1EG-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4	chr8	121282273:121282413:121290349:121290473:121290673:121290817,	121290350	121290473	121290397	121290397	Frame_Shift_Del	A	-	p.L1087fs
LIHC	TCGA-DD-A1EG-01	SNTB1	ENST00000517992.1,ENST00000519177.1,ENST00000395601.3	chr8	121587325:121587465:121644683:121644891:121705931:121706148,	121644684	121644891	121644741	121644741	Frame_Shift_Del	C	-	p.G313fs
LIHC	TCGA-DD-A1EG-01	SNTB1	ENST00000517992.1,ENST00000519177.1,ENST00000395601.3	chr8	121644849:121644891:121705931:121706148:121823512:121823803,	121705932	121706148	121706061	121706061	Frame_Shift_Del	G	-	p.P220fs
LIHC	TCGA-DD-A1EG-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123964808	123964808	Frame_Shift_Del	C	-	p.A353fs
LIHC	TCGA-DD-A1EG-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965406	123965406	Frame_Shift_Del	T	-	p.S552fs
LIHC	TCGA-DD-A1EG-01	FAM83A	ENST00000522648.1,ENST00000546351.1	chr8	124206263:124206388:124219396:124219665:124221764:124221775,	124219397	124219665	124219506	124219506	Frame_Shift_Del	C	-	p.P295fs
LIHC	TCGA-DD-A1EG-01	FAM83A	ENST00000276699.6,ENST00000536633.1	chr8	124206263:124206388:124219396:124219656:124221665:124221736,	124219397	124219656	124219506	124219506	Frame_Shift_Del	C	-	p.P295fs
LIHC	TCGA-DD-A1EG-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124332920:124333415:124335177:124335306:124338132:124338266,	124335178	124335306	124335279	124335279	Frame_Shift_Del	T	-	p.S1344fs
LIHC	TCGA-DD-A1EG-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1	chr8	124338132:124338266:124340429:124340819:124346117:124346261,	124340430	124340819	124340762	124340762	Frame_Shift_Del	T	-	p.K1179fs
LIHC	TCGA-DD-A1EG-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1	chr8	124338132:124338266:124340429:124340819:124346117:124346261,	124340430	124340819	124340792	124340792	Frame_Shift_Del	T	-	p.K1169fs
LIHC	TCGA-DD-A1EG-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124348612:124348772:124349864:124350061:124351550:124351686,	124349865	124350061	124350037	124350037	Frame_Shift_Del	G	-	p.P960fs
LIHC	TCGA-DD-A1EG-01	ANXA13	ENST00000262219.6	chr8	124714881:124714976:124724917:124724993:124747994:124748117,	124724918	124724993	124724944	124724944	Frame_Shift_Del	T	-	p.K63fs
LIHC	TCGA-DD-A1EG-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125029867:125029958:125033789:125033909:125035683:125035836,	125033790	125033909	125033884	125033884	Frame_Shift_Del	A	-	p.E703fs
LIHC	TCGA-DD-A1EG-01	NSMCE2	ENST00000517315.1,ENST00000522563.1,ENST00000287437.3	chr8	126369460:126369561:126369953:126370060:126379009:126379317,	126369954	126370060	126370039	126370039	Frame_Shift_Del	A	-	p.Q202fs
LIHC	TCGA-DD-A1EG-01	FAM49B	ENST00000401979.2,ENST00000519824.2,ENST00000517801.1,ENST00000519540.1,ENST00000523288.1,ENST00000522250.1,ENST00000522746.1,ENST00000517654.1,ENST00000523509.1,ENST00000519110.1	chr8	130866511:130866589:130867856:130867993:130874474:130874572,	130867857	130867993	130867937	130867937	Frame_Shift_Del	G	-	p.Q120fs
LIHC	TCGA-DD-A1EG-01	ASAP1	ENST00000519483.1,ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131070199:131070322:131072824:131073315:131088593:131088652,	131072825	131073315	131073259	131073259	Frame_Shift_Del	T	-	p.I920fs
LIHC	TCGA-DD-A1EG-01	ASAP1	ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131104218:131104389:131124339:131124568:131127873:131127981,	131124340	131124568	131124499	131124499	Frame_Shift_Del	G	-	p.Q748fs
LIHC	TCGA-DD-A1EG-01	ASAP1	ENST00000521426.1,ENST00000524299.1,ENST00000521075.1,ENST00000357668.1,ENST00000520927.1,ENST00000518721.1	chr8	131226890:131226947:131249167:131249240:131370262:131370389,	131249168	131249240	131249190	131249190	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-DD-A1EG-01	ASAP1	ENST00000357668.1,ENST00000518721.1	chr8	131249167:131249240:131370262:131370389:131414130:131414161,	131370263	131370389	131370297	131370297	Frame_Shift_Del	T	-	p.H51fs
LIHC	TCGA-DD-A1EG-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133827032	133827032	Frame_Shift_Del	G	-	p.G361fs
LIHC	TCGA-DD-A1EG-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133898814	133898814	Frame_Shift_Del	A	-	p.P399fs
LIHC	TCGA-DD-A1EG-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133980122:133980215:133981702:133981814:133984038:133984118,	133981703	133981814	133981751	133981751	Frame_Shift_Del	A	-	p.Q1971fs
LIHC	TCGA-DD-A1EG-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000523756.1,ENST00000522523.1,ENST00000220616.4,ENST00000519178.1	chr8	133984876:133984986:133995594:133995657:134006960:134007049,133984876:133984986:133995594:133995657:134015224:134015288,133984876:133984986:133995594:133995657:134014017:134014106,133984876:133984986:133995594:133995657:134024145:134024280,	133995595	133995657	133995617	133995617	Frame_Shift_Del	T	-	p.S2074fs
LIHC	TCGA-DD-A1EG-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134125834:134125847:134128852:134128960:134145713:134145904,134125834:134125847:134128852:134128960:134144055:134144190,	134128853	134128960	134128942	134128942	Frame_Shift_Del	A	-	p.E2615fs
LIHC	TCGA-DD-A1EG-01	KHDRBS3	ENST00000355849.5,ENST00000517859.1,ENST00000524199.1,ENST00000524282.1	chr8	136560996:136561143:136569690:136569830:136594120:136594316,	136569691	136569830	136569693	136569693	Frame_Shift_Del	T	-	p.D158fs
LIHC	TCGA-DD-A1EG-01	KHDRBS3	ENST00000355849.5,ENST00000517859.1,ENST00000524199.1,ENST00000524282.1	chr8	136560996:136561143:136569690:136569830:136594120:136594316,	136569691	136569830	136569781	136569781	Frame_Shift_Del	G	-	p.G188fs
LIHC	TCGA-DD-A1EG-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139609146:139609213:139610961:139611141:139614357:139614402,	139610962	139611141	139611097	139611097	Frame_Shift_Del	T	-	p.K1410fs
LIHC	TCGA-DD-A1EG-01	AGO2	ENST00000519980.1,ENST00000517293.1	chr8	141583000:141583031:141595217:141595410:141615895:141615987,141583000:141583031:141595217:141595410:141645583:141645645,	141595218	141595410	141595382	141595382	Frame_Shift_Del	G	-	p.P17fs
LIHC	TCGA-DD-A1EG-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000519465.1,ENST00000430260.2,ENST00000522684.1,ENST00000523539.1,ENST00000535192.1	chr8	141675015:141675096:141678367:141678523:141684396:141684503,	141678368	141678523	141678498	141678498	Frame_Shift_Del	G	-	p.P913fs
LIHC	TCGA-DD-A1EG-01	PTK2	ENST00000538769.1,ENST00000519899.1,ENST00000519654.1,ENST00000523746.1,ENST00000519024.1,ENST00000517887.1,ENST00000519419.1,ENST00000521059.1,ENST00000340930.3,ENST00000395218.2,ENST00000519361.1,ENST00000519465.1,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141756932:141756959:141762330:141762415:141771263:141771361,	141762331	141762415	141762375	141762375	Frame_Shift_Del	T	-	p.N458fs
LIHC	TCGA-DD-A1EG-01	PTK2	ENST00000524357.1	chr8	141829082:141829119:141840570:141840625:141856358:141856389,141829082:141829119:141840570:141840625:141856697:141856777,	141840571	141840625	141840598	141840598	Frame_Shift_Del	A	-	p.F207fs
LIHC	TCGA-DD-A1EG-01	PTK2	ENST00000521395.1,ENST00000523803.1,ENST00000340930.3,ENST00000520892.1,ENST00000395218.2,ENST00000517453.1,ENST00000522684.1	chr8	141856757:141856777:141900641:141900868:142011223:142011257,141874410:141874498:141900641:141900868:142011223:142011257,141874410:141874498:141900641:141900868:141958764:141958822,141889610:141889736:141900641:141900868:141958764:141958822,141889610:141889736:141900641:141900868:142011223:142011257,141889610:141889736:141900641:141900868:141935759:141935848,	141900642	141900868	141900839	141900839	Frame_Shift_Del	T	-	p.I44fs
LIHC	TCGA-DD-A1EG-01	DENND3	ENST00000424248.1,ENST00000519811.1,ENST00000262585.2,ENST00000518668.1	chr8	142160932:142161052:142161717:142161936:142165947:142166069,	142161718	142161936	142161732	142161732	Frame_Shift_Del	C	-	p.I290fs
LIHC	TCGA-DD-A1EG-01	LY6E	ENST00000520531.1,ENST00000429120.2	chr8	144099973:144100003:144102304:144102408:144102730:144102850,	144102305	144102408	144102333	144102333	Frame_Shift_Del	G	-	p.R87fs
LIHC	TCGA-DD-A1EG-01	LY6E	ENST00000292494.6,ENST00000519546.1,ENST00000523847.1	chr8	144099973:144100003:144102299:144102408:144102730:144102850,	144102300	144102408	144102333	144102333	Frame_Shift_Del	G	-	p.R87fs
LIHC	TCGA-DD-A1EG-01	TOP1MT	ENST00000329245.4,ENST00000518760.1,ENST00000519139.2,ENST00000518951.2,ENST00000521193.1,ENST00000519148.1,ENST00000522041.1,ENST00000520950.1,ENST00000519591.1,ENST00000518007.1,ENST00000523676.1	chr8	144408481:144408514:144411519:144411641:144413393:144413509,	144411520	144411641	144411551	144411551	Frame_Shift_Del	A	-	p.F12fs
LIHC	TCGA-DD-A1EG-01	RHPN1	ENST00000289013.6	chr8	144462094:144462155:144462231:144462345:144462758:144462953,	144462232	144462345	144462279	144462279	Frame_Shift_Del	C	-	p.P385fs
LIHC	TCGA-DD-A1EG-01	RHPN1	ENST00000522335.1	chr8	144461506:144461678:144461998:144462345:144462758:144462953,	144461999	144462345	144462279	144462279	Frame_Shift_Del	C	-	p.P385fs
LIHC	TCGA-DD-A1EG-01	GSDMD	ENST00000534018.1,ENST00000533063.1,ENST00000262580.4,ENST00000526406.1,ENST00000528475.1	chr8	144642772:144642941:144643171:144643274:144643539:144643593,	144643172	144643274	144643180	144643180	Frame_Shift_Del	C	-	p.G196fs
LIHC	TCGA-DD-A1EG-01	SCRIB	ENST00000546337.1,ENST00000320476.3,ENST00000377533.3,ENST00000526832.1,ENST00000356994.2	chr8	144874877:144875037:144875145:144875253:144876069:144876132,	144875146	144875253	144875196	144875196	Frame_Shift_Del	C	-	p.A1323fs
LIHC	TCGA-DD-A1EG-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144895806:144895896:144895987:144896066:144896170:144896288,	144895988	144896066	144896028	144896028	Frame_Shift_Del	C	-	p.A106fs
LIHC	TCGA-DD-A1EG-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144997553	144997553	Frame_Shift_Del	C	-	p.A2319fs
LIHC	TCGA-DD-A1EG-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998334	144998334	Frame_Shift_Del	C	-	p.R2058fs
LIHC	TCGA-DD-A1EG-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000528131.1,ENST00000527816.1,ENST00000356346.3,ENST00000354589.3,ENST00000526416.1,ENST00000357649.2	chr8	145011146:145011239:145011332:145011410:145012318:145012408,	145011333	145011410	145011407	145011407	Frame_Shift_Del	G	-	p.R227fs
LIHC	TCGA-DD-A1EG-01	PARP10	ENST00000313028.7,ENST00000527262.1,ENST00000533665.1,ENST00000524918.1,ENST00000525773.1	chr8	145059150:145059496:145059579:145059816:145059888:145060143,	145059580	145059816	145059715	145059715	Frame_Shift_Del	C	-	p.D180fs
LIHC	TCGA-DD-A1EG-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065673	145065673	Frame_Shift_Del	C	-	p.Y94fs
LIHC	TCGA-DD-A1EG-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145109714:145109816:145109931:145110092:145110690:145110842,	145109932	145110092	145109972	145109972	Frame_Shift_Del	G	-	p.P790fs
LIHC	TCGA-DD-A1EG-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145111850:145112021:145112110:145112223:145112350:145112616,	145112111	145112223	145112177	145112177	Frame_Shift_Del	C	-	p.G490fs
LIHC	TCGA-DD-A1EG-01	SHARPIN	ENST00000398712.2,ENST00000359551.6,ENST00000534242.1,ENST00000530216.1	chr8	145154193:145154333:145154412:145154521:145154605:145154744,	145154413	145154521	145154442	145154442	Frame_Shift_Del	G	-	p.H247fs
LIHC	TCGA-DD-A1EG-01	HSF1	ENST00000532338.1,ENST00000527328.1,ENST00000528838.1	chr8	145535451:145535522:145535648:145535930:145537196:145537302,	145535649	145535930	145535689	145535689	Frame_Shift_Del	C	-	p.P302fs
LIHC	TCGA-DD-A1EG-01	HSF1	ENST00000532338.1,ENST00000527328.1,ENST00000528838.1	chr8	145535451:145535522:145535648:145535930:145537196:145537302,	145535649	145535930	145535810	145535810	Frame_Shift_Del	C	-	p.A341fs
LIHC	TCGA-DD-A1EG-01	SLC52A2	ENST00000532887.1,ENST00000402965.1,ENST00000527078.1,ENST00000530047.1,ENST00000329994.2	chr8	145582847:145583083:145583282:145584153:145584249:145584343,	145583283	145584153	145584116	145584116	Frame_Shift_Del	C	-	p.P322fs
LIHC	TCGA-DD-A1EG-01	SLC52A2	ENST00000526779.1	chr8	145583282:145583407:145583831:145584153:145584249:145584343,	145583832	145584153	145584116	145584116	Frame_Shift_Del	C	-	p.P322fs
LIHC	TCGA-DD-A1EG-01	ADCK5	ENST00000308860.6,ENST00000529654.1,ENST00000526231.2,ENST00000533715.2,ENST00000534714.1	chr8	145603075:145603179:145608281:145608431:145615870:145615946,	145608282	145608431	145608333	145608333	Frame_Shift_Del	G	-	p.V56fs
LIHC	TCGA-DD-A1EG-01	ADCK5	ENST00000308860.6	chr8	145616560:145616674:145616779:145616911:145616982:145617066,	145616780	145616911	145616900	145616900	Frame_Shift_Del	A	-	p.K307fs
LIHC	TCGA-DD-A1EG-01	CPSF1	ENST00000531727.1,ENST00000349769.3,ENST00000526271.1	chr8	145618913:145619011:145619097:145619253:145619327:145619375,	145619098	145619253	145619235	145619235	Frame_Shift_Del	C	-	p.G1293fs
LIHC	TCGA-DD-A1EG-01	CPSF1	ENST00000349769.3	chr8	145622957:145623094:145623168:145623347:145623691:145623833,	145623169	145623347	145623307	145623307	Frame_Shift_Del	G	-	p.P645fs
LIHC	TCGA-DD-A1EG-01	CPSF1	ENST00000349769.3,ENST00000531683.1	chr8	145626064:145626211:145626317:145626469:145626604:145626685,	145626318	145626469	145626416	145626416	Frame_Shift_Del	C	-	p.G147fs
LIHC	TCGA-DD-A1EG-01	CPSF1	ENST00000349769.3,ENST00000531042.1,ENST00000531683.1	chr8	145626332:145626469:145626604:145626685:145626823:145626957,	145626605	145626685	145626640	145626640	Frame_Shift_Del	G	-	p.L118fs
LIHC	TCGA-DD-A1EG-01	VPS28	ENST00000377348.2,ENST00000292510.4,ENST00000531032.1,ENST00000529182.1,ENST00000528142.1,ENST00000526054.1	chr8	145650347:145650383:145651065:145651155:145651408:145651446,145650328:145650434:145651065:145651155:145651408:145651446,	145651066	145651155	145651071	145651071	Frame_Shift_Del	G	-	p.P63fs
LIHC	TCGA-DD-A1EG-01	TONSL	ENST00000409379.3,ENST00000497613.1	chr8	145658970:145659142:145659360:145659662:145660193:145660272,	145659361	145659662	145659552	145659552	Frame_Shift_Del	G	-	p.L1066fs
LIHC	TCGA-DD-A1EG-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000483757.1,ENST00000495184.1,ENST00000382329.1	chr9	370229:370300:371427:371566:372184:372286,	371428	371566	371453	371453	Frame_Shift_Del	A	-	p.K564fs
LIHC	TCGA-DD-A1EG-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000483757.1,ENST00000495184.1,ENST00000382329.1	chr9	370229:370300:371427:371566:372184:372286,	371428	371566	371464	371464	Frame_Shift_Del	C	-	p.L567fs
LIHC	TCGA-DD-A1EG-01	DOCK8	ENST00000493666.2,ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	420400:420583:420948:421078:422047:422135,	420949	421078	421036	421036	Frame_Shift_Del	G	-	p.G1303fs
LIHC	TCGA-DD-A1EG-01	DMRT1	ENST00000382276.3,ENST00000569227.1	chr9	893911:894195:916762:916907:967984:968515,	916763	916907	916822	916822	Frame_Shift_Del	C	-	p.Y294fs
LIHC	TCGA-DD-A1EG-01	CDC37L1	ENST00000381854.3,ENST00000381858.1	chr9	4684876:4685158:4688512:4688606:4697095:4697211,	4688513	4688606	4688589	4688589	Frame_Shift_Del	A	-	p.Q164fs
LIHC	TCGA-DD-A1EG-01	ERMP1	ENST00000487088.1,ENST00000339450.5,ENST00000489219.1,ENST00000475005.1,ENST00000462592.1,ENST00000381506.3	chr9	5823895:5824001:5825091:5825219:5830726:5830787,	5825092	5825219	5825125	5825125	Frame_Shift_Del	A	-	p.F245fs
LIHC	TCGA-DD-A1EG-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968812	5968812	Frame_Shift_Del	A	-	p.F473fs
LIHC	TCGA-DD-A1EG-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5969387	5969387	Frame_Shift_Del	T	-	p.I282fs
LIHC	TCGA-DD-A1EG-01	IL33	ENST00000456383.2	chr9	6215808:6215852:6241683:6241785:6250473:6250599,	6241684	6241785	6241781	6241781	Frame_Shift_Del	G	-	p.L29fs
LIHC	TCGA-DD-A1EG-01	GLDC	ENST00000321612.6	chr9	6536063:6536236:6540050:6540146:6550802:6550914,	6540051	6540146	6540101	6540101	Frame_Shift_Del	T	-	p.K872fs
LIHC	TCGA-DD-A1EG-01	GLDC	ENST00000321612.6	chr9	6610191:6610356:6620183:6620319:6644613:6644692,	6620184	6620319	6620207	6620207	Frame_Shift_Del	C	-	p.R149fs
LIHC	TCGA-DD-A1EG-01	GLDC	ENST00000321612.6	chr9	6610191:6610356:6620183:6620319:6644613:6644692,	6620184	6620319	6620211	6620211	Frame_Shift_Del	A	-	p.L148fs
LIHC	TCGA-DD-A1EG-01	GLDC	ENST00000321612.6	chr9	6610191:6610356:6620183:6620319:6644613:6644692,	6620184	6620319	6620274	6620274	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A1EG-01	KDM4C	ENST00000535193.1,ENST00000489243.1,ENST00000438023.1,ENST00000442236.2,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3	chr9	6814630:6814745:6849506:6849700:6880011:6880061,	6849507	6849700	6849608	6849608	Frame_Shift_Del	T	-	p.Y179fs
LIHC	TCGA-DD-A1EG-01	KDM4C	ENST00000490806.1,ENST00000428870.2,ENST00000466673.1,ENST00000442236.2,ENST00000420847.1,ENST00000381309.3,ENST00000381306.3	chr9	7128065:7128236:7165237:7165357:7169797:7169829,	7165238	7165357	7165321	7165321	Frame_Shift_Del	A	-	p.A955fs
LIHC	TCGA-DD-A1EG-01	MPDZ	ENST00000447879.1,ENST00000541718.1,ENST00000536827.1,ENST00000381015.4,ENST00000546205.1,ENST00000319217.7,ENST00000381022.2	chr9	13193165:13193312:13196119:13196229:13205034:13205106,	13196120	13196229	13196149	13196149	Frame_Shift_Del	T	-	p.R543fs
LIHC	TCGA-DD-A1EG-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380894.1	chr9	14748398:14748637:14750124:14750274:14756371:14756444,	14750125	14750274	14750139	14750139	Frame_Shift_Del	A	-	p.L1849fs
LIHC	TCGA-DD-A1EG-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380875.3	chr9	14792740:14792882:14797495:14797640:14801649:14801872,	14797496	14797640	14797548	14797548	Frame_Shift_Del	T	-	p.T1264fs
LIHC	TCGA-DD-A1EG-01	TTC39B	ENST00000380850.4,ENST00000512701.2,ENST00000507993.1,ENST00000355694.2,ENST00000297615.5,ENST00000507285.1,ENST00000505732.1	chr9	15192587:15192693:15199858:15199923:15203820:15203888,	15199859	15199923	15199884	15199884	Frame_Shift_Del	T	-	p.I201fs
LIHC	TCGA-DD-A1EG-01	SNAPC3	ENST00000490969.1,ENST00000467062.1,ENST00000380821.3	chr9	15451317:15451400:15453038:15453203:15457957:15458065,	15453039	15453203	15453176	15453176	Frame_Shift_Del	A	-	p.E318fs
LIHC	TCGA-DD-A1EG-01	PSIP1	ENST00000380738.4,ENST00000380733.4	chr9	15466745:15466857:15468627:15468841:15468954:15469056,	15468628	15468841	15468648	15468648	Frame_Shift_Del	T	-	p.K467fs
LIHC	TCGA-DD-A1EG-01	CCDC171	ENST00000535968.1,ENST00000380701.3,ENST00000297641.3	chr9	15594038:15594170:15623264:15623411:15657124:15657217,	15623265	15623411	15623298	15623298	Frame_Shift_Del	A	-	p.K237fs
LIHC	TCGA-DD-A1EG-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436375	16436375	Frame_Shift_Del	G	-	p.P608fs
LIHC	TCGA-DD-A1EG-01	BNC2	ENST00000380667.2	chr9	16727794:16727995:16738357:16738483:16870643:16870704,16582980:16583083:16738357:16738483:16870643:16870704,	16738358	16738483	16738389	16738389	Frame_Shift_Del	G	-	p.P33fs
LIHC	TCGA-DD-A1EG-01	SH3GL2	ENST00000537391.1,ENST00000380607.4	chr9	17761434:17761507:17786378:17786522:17787377:17787511,	17786379	17786522	17786416	17786416	Frame_Shift_Del	A	-	p.S75fs
LIHC	TCGA-DD-A1EG-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18661932:18662071:18675854:18675905:18680309:18680514,	18675855	18675905	18675895	18675895	Frame_Shift_Del	C	-	p.P376fs
LIHC	TCGA-DD-A1EG-01	HAUS6	ENST00000380502.3	chr9	19053140:19056402:19057958:19058999:19060085:19060221,	19057959	19058999	19058461	19058461	Frame_Shift_Del	A	-	p.F768fs
LIHC	TCGA-DD-A1EG-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19070216:19070298:19076599:19076702:19078173:19078300,	19076600	19076702	19076672	19076672	Frame_Shift_Del	G	-	p.L408fs
LIHC	TCGA-DD-A1EG-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19076599:19076702:19078173:19078300:19080476:19080670,	19078174	19078300	19078191	19078191	Frame_Shift_Del	T	-	p.I392fs
LIHC	TCGA-DD-A1EG-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19080476:19080670:19082870:19083041:19086731:19086780,	19082871	19083041	19082998	19082998	Frame_Shift_Del	A	-	p.L248fs
LIHC	TCGA-DD-A1EG-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19087088:19087154:19089409:19089557:19093168:19093211,	19089410	19089557	19089455	19089455	Frame_Shift_Del	A	-	p.L180fs
LIHC	TCGA-DD-A1EG-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19087088:19087154:19089409:19089557:19093168:19093211,	19089410	19089557	19089464	19089464	Frame_Shift_Del	A	-	p.L177fs
LIHC	TCGA-DD-A1EG-01	DENND4C	ENST00000380427.1	chr9	19361843:19361961:19369834:19369985:19371753:19371818,19361843:19361961:19369834:19369985:19372034:19372592,	19369835	19369985	19369841	19369841	Frame_Shift_Del	A	-	p.E1032fs
LIHC	TCGA-DD-A1EG-01	MLLT3	ENST00000469261.1	chr9	20346403:20346572:20360739:20360839:20363473:20363567,	20360740	20360839	20360754	20360754	Frame_Shift_Del	T	-	p.T473fs
LIHC	TCGA-DD-A1EG-01	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20413913	20413913	Frame_Shift_Del	A	-	p.S312fs
LIHC	TCGA-DD-A1EG-01	IFT74	ENST00000443698.1,ENST00000429045.2,ENST00000433700.1,ENST00000380062.5	chr9	26990131:26990193:27009017:27009156:27011903:27011966,	27009018	27009156	27009023	27009023	Frame_Shift_Del	A	-	p.E198fs
LIHC	TCGA-DD-A1EG-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27157828:27158140:27168492:27168603:27169474:27169627,	27168493	27168603	27168597	27168597	Frame_Shift_Del	A	-	p.K157fs
LIHC	TCGA-DD-A1EG-01	TEK	ENST00000380036.4	chr9	27173219:27173360:27180237:27180366:27183456:27183608,	27180238	27180366	27180258	27180258	Frame_Shift_Del	G	-	p.G308fs
LIHC	TCGA-DD-A1EG-01	TEK	ENST00000406359.4,ENST00000519080.1,ENST00000519097.1,ENST00000380036.4	chr9	27185482:27185627:27190526:27190688:27192486:27192621,	27190527	27190688	27190683	27190683	Frame_Shift_Del	T	-	p.I495fs
LIHC	TCGA-DD-A1EG-01	APTX	ENST00000483148.1,ENST00000478279.1,ENST00000464632.1,ENST00000465003.1,ENST00000495360.1,ENST00000485479.1,ENST00000472896.1	chr9	32985986:32986028:32987541:32987729:32989756:32989893,32985986:32986028:32987541:32987729:32988080:32988122,	32987542	32987729	32987614	32987614	Frame_Shift_Del	C	-	p.G137fs
LIHC	TCGA-DD-A1EG-01	APTX	ENST00000480031.1	chr9	32985986:32986028:32987541:32987844:32989756:32989893,	32987542	32987844	32987614	32987614	Frame_Shift_Del	C	-	p.G137fs
LIHC	TCGA-DD-A1EG-01	SMU1	ENST00000397149.3,ENST00000536631.1	chr9	33057595:33057712:33060462:33060582:33062046:33062175,	33060463	33060582	33060546	33060546	Frame_Shift_Del	A	-	p.S223fs
LIHC	TCGA-DD-A1EG-01	B4GALT1	ENST00000541851.1,ENST00000379731.4	chr9	33113365:33113584:33113771:33113876:33115988:33116111,	33113772	33113876	33113828	33113828	Frame_Shift_Del	C	-	p.G336fs
LIHC	TCGA-DD-A1EG-01	B4GALT1	ENST00000379731.4	chr9	33115988:33116111:33120416:33120604:33135186:33135422,	33120417	33120604	33120463	33120463	Frame_Shift_Del	A	-	p.S264fs
LIHC	TCGA-DD-A1EG-01	NOL6	ENST00000455041.2	chr9	33467688:33467866:33468027:33468167:33468318:33468420,	33468028	33468167	33468047	33468047	Frame_Shift_Del	C	-	p.A469fs
LIHC	TCGA-DD-A1EG-01	NOL6	ENST00000297990.4,ENST00000379471.2,ENST00000353159.2	chr9	33467688:33467866:33468027:33468143:33468318:33468420,	33468028	33468143	33468047	33468047	Frame_Shift_Del	C	-	p.A469fs
LIHC	TCGA-DD-A1EG-01	NOL6	ENST00000297990.4,ENST00000379471.2,ENST00000353159.2	chr9	33469204:33469339:33469496:33469665:33470009:33470189,	33469497	33469665	33469522	33469522	Frame_Shift_Del	T	-	p.K234fs
LIHC	TCGA-DD-A1EG-01	NOL6	ENST00000297990.4,ENST00000379471.2,ENST00000353159.2	chr9	33469204:33469339:33469496:33469665:33470009:33470189,	33469497	33469665	33469611	33469611	Frame_Shift_Del	G	-	p.L205fs
LIHC	TCGA-DD-A1EG-01	UBAP2	ENST00000539807.1,ENST00000379239.4,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33927024:33927078:33927794:33927990:33932559:33932626,	33927795	33927990	33927844	33927844	Frame_Shift_Del	G	-	p.P774fs
LIHC	TCGA-DD-A1EG-01	UBAP2	ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33944512:33944637:33948371:33948585:33953282:33953472,	33948372	33948585	33948533	33948533	Frame_Shift_Del	T	-	p.N370fs
LIHC	TCGA-DD-A1EG-01	UBAP2	ENST00000418786.2,ENST00000412543.1,ENST00000360802.1	chr9	33998784:33998862:34017047:34017187:34048822:34048870,33998784:33998862:34017047:34017187:34048875:34048927,	34017048	34017187	34017099	34017099	Frame_Shift_Del	T	-	p.K16fs
LIHC	TCGA-DD-A1EG-01	UBAP1	ENST00000543944.1	chr9	34234213:34234338:34241182:34242106:34249776:34249959,34220905:34220946:34241182:34242106:34249776:34249959,	34241183	34242106	34241465	34241465	Frame_Shift_Del	C	-	p.P148fs
LIHC	TCGA-DD-A1EG-01	UBAP1	ENST00000540348.1,ENST00000297661.4,ENST00000545103.1,ENST00000536252.1,ENST00000543944.1,ENST00000359544.2	chr9	34241850:34242106:34249776:34249959:34250655:34250757,	34249777	34249959	34249781	34249781	Frame_Shift_Del	C	-	p.T363fs
LIHC	TCGA-DD-A1EG-01	CNTFR	ENST00000351266.4,ENST00000417345.1,ENST00000378980.3	chr9	34557523:34557690:34557864:34557982:34564596:34564830,	34557865	34557982	34557936	34557936	Frame_Shift_Del	G	-	p.P122fs
LIHC	TCGA-DD-A1EG-01	GALT	ENST00000472111.1	chr9	34647085:34647255:34647488:34647958:34648111:34648168,	34647489	34647958	34647672	34647672	Frame_Shift_Del	T	-	p.L116fs
LIHC	TCGA-DD-A1EG-01	GALT	ENST00000556494.1,ENST00000473529.1	chr9	34647085:34647255:34647488:34647702:34647828:34647958,	34647489	34647702	34647672	34647672	Frame_Shift_Del	T	-	p.L116fs
LIHC	TCGA-DD-A1EG-01	CCL21	ENST00000259607.2	chr9	34709001:34709424:34709496:34709679:34709773:34709894,	34709497	34709679	34709543	34709543	Frame_Shift_Del	C	-	p.A109fs
LIHC	TCGA-DD-A1EG-01	UNC13B	ENST00000378495.3,ENST00000378496.4	chr9	35258989:35259047:35295692:35295927:35310463:35310778,	35295693	35295927	35295864	35295864	Frame_Shift_Del	G	-	p.R233fs
LIHC	TCGA-DD-A1EG-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35310463:35310778:35313895:35313986:35366943:35366990,	35313896	35313986	35313950	35313950	Frame_Shift_Del	C	-	p.I377fs
LIHC	TCGA-DD-A1EG-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35399157:35399281:35399388:35399445:35399645:35399726,	35399389	35399445	35399437	35399437	Frame_Shift_Del	A	-	p.K1334fs
LIHC	TCGA-DD-A1EG-01	TPM2	ENST00000471212.1	chr9	35684247:35684312:35684484:35685136:35685265:35685336,	35684485	35685136	35685090	35685090	Frame_Shift_Del	G	-	p.L204fs
LIHC	TCGA-DD-A1EG-01	TPM2	ENST00000378292.3	chr9	35684484:35684547:35685060:35685136:35685265:35685336,	35685061	35685136	35685090	35685090	Frame_Shift_Del	G	-	p.L204fs
LIHC	TCGA-DD-A1EG-01	TLN1	ENST00000314888.9	chr9	35705958:35706108:35706192:35706363:35706446:35706520,	35706193	35706363	35706255	35706255	Frame_Shift_Del	T	-	p.T1767fs
LIHC	TCGA-DD-A1EG-01	RNF38	ENST00000259605.6,ENST00000350199.4,ENST00000357058.3,ENST00000353739.4,ENST00000377877.4,ENST00000377885.2	chr9	36353166:36353328:36356299:36356470:36357771:36357939,	36356300	36356470	36356349	36356349	Frame_Shift_Del	A	-	p.L204fs
LIHC	TCGA-DD-A1EG-01	RNF38	ENST00000484621.1	chr9	36369719:36369929:36375930:36376124:36390463:36390613,36369719:36369929:36375930:36376124:36400550:36400869,36369719:36369929:36375930:36376124:36400932:36401195,	36375931	36376124	36376000	36376000	Frame_Shift_Del	G	-	p.P13fs
LIHC	TCGA-DD-A1EG-01	MELK	ENST00000536860.1,ENST00000495529.1,ENST00000536987.1	chr9	36594666:36594768:36597218:36597287:36599390:36599483,36589532:36589649:36597218:36597287:36599390:36599483,	36597219	36597287	36597224	36597224	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A1EG-01	ZCCHC7	ENST00000461038.1,ENST00000336755.5,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2	chr9	37302184:37302228:37304184:37304310:37305540:37305711,	37304185	37304310	37304278	37304278	Frame_Shift_Del	G	-	p.G250fs
LIHC	TCGA-DD-A1EG-01	ZCCHC7	ENST00000461038.1,ENST00000336755.5,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2	chr9	37302184:37302228:37304184:37304310:37305540:37305711,	37304185	37304310	37304283	37304283	Frame_Shift_Del	T	-	p.H251fs
LIHC	TCGA-DD-A1EG-01	ZCCHC7	ENST00000496099.1,ENST00000461038.1,ENST00000336755.5,ENST00000497924.1,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2,ENST00000481507.1	chr9	37327795:37327831:37349353:37349449:37354706:37354799,	37349354	37349449	37349372	37349372	Frame_Shift_Del	A	-	p.K337fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3	ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39109156:39109284:39118099:39118256:39132928:39133129,	39118100	39118256	39118204	39118204	Frame_Shift_Del	G	-	p.S711fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149917	39149917	Frame_Shift_Del	C	-	p.G512fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3B	ENST00000276974.6,ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43800863:43801011:43815784:43815988:43816636:43816821,	43815785	43815988	43815973	43815973	Frame_Shift_Del	T	-	p.F244fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43818040:43818184:43822517:43822779:43828077:43828221,	43822518	43822779	43822638	43822638	Frame_Shift_Del	T	-	p.F398fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43818040:43818184:43822517:43822779:43828077:43828221,	43822518	43822779	43822642	43822642	Frame_Shift_Del	G	-	p.R399fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3B	ENST00000479351.1	chr9	43828077:43828221:43853496:43853616:43861002:43861206,	43853497	43853616	43853521	43853521	Frame_Shift_Del	C	-	p.A594fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3B	ENST00000479351.1	chr9	43828077:43828221:43853496:43853616:43861002:43861206,	43853497	43853616	43853579	43853579	Frame_Shift_Del	C	-	p.G613fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3B	ENST00000479351.1	chr9	43861005:43861206:43884944:43885072:43890295:43890466,	43884945	43885072	43884971	43884971	Frame_Shift_Del	A	-	p.Q755fs
LIHC	TCGA-DD-A1EG-01	APBA1	ENST00000265381.4	chr9	72064499:72064712:72067037:72067217:72071162:72071348,	72067038	72067217	72067048	72067048	Frame_Shift_Del	T	-	p.N653fs
LIHC	TCGA-DD-A1EG-01	PTAR1	ENST00000340434.4,ENST00000377200.5	chr9	72333565:72333600:72338241:72338546:72347054:72347268,	72338242	72338546	72338461	72338461	Frame_Shift_Del	A	-	p.L165fs
LIHC	TCGA-DD-A1EG-01	SMC5	ENST00000361138.5	chr9	72959059:72959185:72961520:72961565:72961981:72962077,	72961521	72961565	72961559	72961559	Frame_Shift_Del	C	-	p.L854fs
LIHC	TCGA-DD-A1EG-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962528:72962633:72962834:72962954:72965029:72965209,	72962835	72962954	72962875	72962875	Frame_Shift_Del	A	-	p.E937fs
LIHC	TCGA-DD-A1EG-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962528:72962633:72962834:72962954:72965029:72965209,	72962835	72962954	72962900	72962900	Frame_Shift_Del	T	-	p.N945fs
LIHC	TCGA-DD-A1EG-01	TRPM3	ENST00000423814.3,ENST00000360823.2,ENST00000377106.1,ENST00000396283.1,ENST00000358082.3,ENST00000396292.4	chr9	73399020:73399195:73426085:73426160:73442762:73442934,	73426086	73426160	73426113	73426113	Frame_Shift_Del	A	-	p.W188fs
LIHC	TCGA-DD-A1EG-01	ABHD17B	ENST00000333421.6	chr9	74484998:74485178:74489529:74489999:74525549:74525658,	74489530	74489999	74489586	74489586	Frame_Shift_Del	G	-	p.P137fs
LIHC	TCGA-DD-A1EG-01	ABHD17B	ENST00000333421.6	chr9	74484998:74485178:74489529:74489999:74525549:74525658,	74489530	74489999	74489854	74489854	Frame_Shift_Del	A	-	p.L48fs
LIHC	TCGA-DD-A1EG-01	TMC1	ENST00000297784.5,ENST00000396237.3,ENST00000340019.3,ENST00000486417.1	chr9	75407106:75407268:75420297:75420426:75431058:75431126,	75420298	75420426	75420385	75420385	Frame_Shift_Del	T	-	p.F552fs
LIHC	TCGA-DD-A1EG-01	TMC1	ENST00000297784.5,ENST00000396237.3,ENST00000340019.3,ENST00000486417.1	chr9	75445366:75445445:75445546:75445598:75450866:75450977,	75445547	75445598	75445562	75445562	Frame_Shift_Del	A	-	p.K742fs
LIHC	TCGA-DD-A1EG-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77403529:77403658:77407539:77407686:77411656:77411809,	77407540	77407686	77407551	77407551	Frame_Shift_Del	A	-	p.W843fs
LIHC	TCGA-DD-A1EG-01	NMRK1	ENST00000494066.1	chr9	77681672:77681756:77683911:77684958:77692074:77692123,	77683912	77684958	77683936	77683936	Frame_Shift_Del	T	-	p.M162fs
LIHC	TCGA-DD-A1EG-01	PCSK5	ENST00000424854.2,ENST00000545128.1	chr9	78937967:78938204:78942924:78943155:78947348:78947526,	78942925	78943155	78943005	78943005	Frame_Shift_Del	G	-	p.G1447fs
LIHC	TCGA-DD-A1EG-01	VPS13A	ENST00000376634.4,ENST00000423463.2,ENST00000360280.3,ENST00000357409.5	chr9	79897124:79897190:79898270:79898387:79898462:79898566,	79898271	79898387	79898275	79898275	Frame_Shift_Del	A	-	p.L1041fs
LIHC	TCGA-DD-A1EG-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000360280.3,ENST00000357409.5	chr9	79959924:79960058:79966232:79966362:79968324:79968547,	79966233	79966362	79966256	79966256	Frame_Shift_Del	C	-	p.S2438fs
LIHC	TCGA-DD-A1EG-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000360280.3,ENST00000357409.5	chr9	79959924:79960058:79966232:79966362:79968324:79968547,	79966233	79966362	79966332	79966332	Frame_Shift_Del	A	-	p.R2463fs
LIHC	TCGA-DD-A1EG-01	GNA14	ENST00000341700.6,ENST00000464095.1	chr9	80039043:80039085:80040477:80040631:80043822:80043952,	80040478	80040631	80040598	80040598	Frame_Shift_Del	T	-	p.T253fs
LIHC	TCGA-DD-A1EG-01	TLE1	ENST00000376472.1,ENST00000418319.1	chr9	84300747:84300811:84302248:84302349:84303131:84303363,	84302249	84302349	84302323	84302323	Frame_Shift_Del	G	-	p.P17fs
LIHC	TCGA-DD-A1EG-01	UBQLN1	ENST00000257468.7	chr9	86278789:86278958:86279944:86280060:86284099:86284206,	86279945	86280060	86280023	86280023	Frame_Shift_Del	G	-	p.P457fs
LIHC	TCGA-DD-A1EG-01	KIF27	ENST00000297814.2	chr9	86485462:86485547:86495211:86495409:86498727:86498933,	86495212	86495409	86495259	86495259	Frame_Shift_Del	T	-	p.R866fs
LIHC	TCGA-DD-A1EG-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000337006.4,ENST00000376083.3	chr9	88201745:88201875:88203212:88203393:88204442:88204596,	88203213	88203393	88203257	88203257	Frame_Shift_Del	A	-	p.F953fs
LIHC	TCGA-DD-A1EG-01	SPIN1	ENST00000485565.2	chr9	91003366:91003453:91041296:91041506:91063855:91063904,	91041297	91041506	91041472	91041472	Frame_Shift_Del	A	-	p.G6fs
LIHC	TCGA-DD-A1EG-01	ROR2	ENST00000550066.1,ENST00000375715.1,ENST00000375708.3	chr9	94488822:94489025:94493191:94493437:94495403:94495718,	94493192	94493437	94493292	94493292	Frame_Shift_Del	C	-	p.G361fs
LIHC	TCGA-DD-A1EG-01	OGN	ENST00000447356.1,ENST00000262551.4,ENST00000375561.5	chr9	95152135:95152338:95155367:95155526:95163373:95163467,	95155368	95155526	95155397	95155397	Frame_Shift_Del	T	-	p.K133fs
LIHC	TCGA-DD-A1EG-01	WNK2	ENST00000448039.1,ENST00000395475.2	chr9	96015164:96015364:96019229:96019421:96021212:96021357,	96019230	96019421	96019351	96019351	Frame_Shift_Del	C	-	p.A771fs
LIHC	TCGA-DD-A1EG-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96019229:96019421:96021212:96021896:96024095:96024389,	96021213	96021896	96021681	96021681	Frame_Shift_Del	C	-	p.P952fs
LIHC	TCGA-DD-A1EG-01	WNK2	ENST00000395475.2,ENST00000448251.1,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96060134:96060349:96061351:96061543:96070609:96070866,96060134:96060349:96061351:96061543:96062332:96062431,	96061352	96061543	96061478	96061478	Frame_Shift_Del	G	-	p.R2054fs
LIHC	TCGA-DD-A1EG-01	FBP1	ENST00000415431.1,ENST00000375326.4	chr9	97367738:97367858:97369096:97369234:97372202:97372343,	97369097	97369234	97369147	97369147	Frame_Shift_Del	C	-	p.D219fs
LIHC	TCGA-DD-A1EG-01	SLC35D2	ENST00000253270.7	chr9	99086372:99086451:99098998:99099066:99106185:99106275,	99098999	99099066	99099002	99099002	Frame_Shift_Del	A	-	p.L250fs
LIHC	TCGA-DD-A1EG-01	SLC35D2	ENST00000253270.7	chr9	99106185:99106278:99107580:99107683:99113384:99113453,	99107581	99107683	99107607	99107607	Frame_Shift_Del	A	-	p.Y189fs
LIHC	TCGA-DD-A1EG-01	SLC35D2	ENST00000253270.7,ENST00000375259.4,ENST00000375257.1	chr9	99126745:99126832:99130553:99130587:99145758:99145962,	99130554	99130587	99130570	99130570	Frame_Shift_Del	A	-	p.F59fs
LIHC	TCGA-DD-A1EG-01	CDC14B	ENST00000375236.1,ENST00000375240.3,ENST00000375241.1,ENST00000463569.1,ENST00000412285.2,ENST00000496750.1,ENST00000265659.2	chr9	99327058:99327134:99327674:99327765:99381500:99381579,	99327675	99327765	99327752	99327752	Frame_Shift_Del	A	-	p.F58fs
LIHC	TCGA-DD-A1EG-01	TDRD7	ENST00000422139.2,ENST00000355295.4	chr9	100203939:100204157:100222459:100223046:100227123:100227310,	100222460	100223046	100222738	100222738	Frame_Shift_Del	A	-	p.L378fs
LIHC	TCGA-DD-A1EG-01	TDRD7	ENST00000422139.2,ENST00000355295.4	chr9	100203939:100204157:100222459:100223046:100227123:100227310,	100222460	100223046	100222932	100222932	Frame_Shift_Del	A	-	p.E443fs
LIHC	TCGA-DD-A1EG-01	NANS	ENST00000461452.1,ENST00000210444.5	chr9	100839199:100839299:100840474:100840629:100843097:100843337,	100840475	100840629	100840590	100840590	Frame_Shift_Del	C	-	p.Y188fs
LIHC	TCGA-DD-A1EG-01	NANS	ENST00000415280.1	chr9	100839199:100839299:100840343:100840629:100843097:100843337,	100840344	100840629	100840590	100840590	Frame_Shift_Del	C	-	p.Y188fs
LIHC	TCGA-DD-A1EG-01	TRIM14	ENST00000342043.3,ENST00000341469.2	chr9	100862212:100862446:100872170:100872266:100881263:100881418,	100872171	100872266	100872244	100872244	Frame_Shift_Del	T	-	p.K77fs
LIHC	TCGA-DD-A1EG-01	ANKS6	ENST00000375018.1,ENST00000353234.4	chr9	101547113:101547158:101552385:101552888:101558414:101558794,	101552386	101552888	101552845	101552845	Frame_Shift_Del	C	-	p.A135fs
LIHC	TCGA-DD-A1EG-01	TEX10	ENST00000537512.1	chr9	103108353:103108597:103108975:103109688:103115053:103115165,	103108976	103109688	103109071	103109071	Frame_Shift_Del	A	-	p.F266fs
LIHC	TCGA-DD-A1EG-01	FKTN	ENST00000223528.2,ENST00000602526.1,ENST00000602661.1,ENST00000448551.2,ENST00000357998.5	chr9	108377561:108377688:108380239:108380373:108382214:108382342,	108380240	108380373	108380324	108380324	Frame_Shift_Del	T	-	p.I332fs
LIHC	TCGA-DD-A1EG-01	ZNF462	ENST00000441147.2	chr9	109691960:109692040:109692805:109692970:109694543:109694830,	109692806	109692970	109692808	109692808	Frame_Shift_Del	T	-	p.P1950fs
LIHC	TCGA-DD-A1EG-01	CTNNAL1	ENST00000325580.6,ENST00000374595.4,ENST00000325551.4	chr9	111746626:111746716:111753005:111753125:111754911:111755099,	111753006	111753125	111753049	111753049	Frame_Shift_Del	T	-	p.N199fs
LIHC	TCGA-DD-A1EG-01	CTNNAL1	ENST00000325580.6,ENST00000374595.4,ENST00000325551.4	chr9	111753005:111753125:111754911:111755099:111761346:111761536,	111754912	111755099	111754956	111754956	Frame_Shift_Del	C	-	p.A159fs
LIHC	TCGA-DD-A1EG-01	PTPN3	ENST00000374541.2	chr9	112211090:112211135:112216775:112216854:112219452:112219495,	112216776	112216854	112216814	112216814	Frame_Shift_Del	A	-	p.F110fs
LIHC	TCGA-DD-A1EG-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113170017	113170017	Frame_Shift_Del	A	-	p.F2621fs
LIHC	TCGA-DD-A1EG-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114348277:114348445:114355205:114355262:114356501:114356545,	114355206	114355262	114355214	114355214	Frame_Shift_Del	T	-	p.Q67fs
LIHC	TCGA-DD-A1EG-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000529933.1,ENST00000374263.3,ENST00000374270.3	chr9	114842353:114842445:114860749:114860942:114864455:114864565,	114860750	114860942	114860903	114860903	Frame_Shift_Del	A	-	p.S441fs
LIHC	TCGA-DD-A1EG-01	SNX30	ENST00000374232.3	chr9	115567055:115567247:115579984:115580095:115593004:115593163,	115579985	115580095	115580000	115580000	Frame_Shift_Del	T	-	p.F122fs
LIHC	TCGA-DD-A1EG-01	SNX30	ENST00000416585.1,ENST00000374232.3	chr9	115600864:115600977:115613138:115613225:115626526:115626679,	115613139	115613225	115613155	115613155	Frame_Shift_Del	G	-	p.R344fs
LIHC	TCGA-DD-A1EG-01	FKBP15	ENST00000446284.1,ENST00000414250.1,ENST00000238256.3	chr9	115950668:115950771:115952750:115952858:115955771:115955829,	115952751	115952858	115952774	115952774	Frame_Shift_Del	C	-	p.D384fs
LIHC	TCGA-DD-A1EG-01	FKBP15	ENST00000462889.1,ENST00000414250.1,ENST00000238256.3	chr9	115969491:115969576:115973756:115973872:115983470:115983559,	115973757	115973872	115973779	115973779	Frame_Shift_Del	T	-	p.K49fs
LIHC	TCGA-DD-A1EG-01	RGS3	ENST00000478599.1,ENST00000462143.1,ENST00000343817.5,ENST00000374140.2,ENST00000350696.5	chr9	116299078:116299198:116345729:116346707:116353612:116353677,	116345730	116346707	116346362	116346362	Frame_Shift_Del	G	-	p.E890fs
LIHC	TCGA-DD-A1EG-01	COL27A1	ENST00000451716.1,ENST00000356083.3,ENST00000494090.2	chr9	116930887:116931743:116940570:116940624:116945301:116945355,	116940571	116940624	116940574	116940574	Frame_Shift_Del	C	-	p.P639fs
LIHC	TCGA-DD-A1EG-01	AKNA	ENST00000312033.3,ENST00000374088.3	chr9	117138745:117139812:117143339:117143726:117150139:117150243,	117143340	117143726	117143427	117143427	Frame_Shift_Del	G	-	p.Q64fs
LIHC	TCGA-DD-A1EG-01	TNC	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1,ENST00000544972.1	chr9	117797482:117797613:117798376:117798520:117800539:117800659,	117798377	117798520	117798413	117798413	Frame_Shift_Del	G	-	p.Q1874fs
LIHC	TCGA-DD-A1EG-01	TNC	ENST00000535648.1,ENST00000341037.4,ENST00000544972.1	chr9	117804497:117804620:117808688:117808961:117835881:117835920,117804497:117804620:117808688:117808961:117815018:117815294,117804497:117804620:117808688:117808961:117810538:117810811,117804497:117804620:117808688:117808961:117819431:117819580,	117808689	117808961	117808752	117808752	Frame_Shift_Del	T	-	p.I1688fs
LIHC	TCGA-DD-A1EG-01	CDK5RAP2	ENST00000433194.2,ENST00000416449.1,ENST00000484546.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000480467.1,ENST00000349780.4,ENST00000474262.1,ENST00000425647.1	chr9	123151478:123151570:123152018:123152065:123156789:123156916,	123152019	123152065	123152048	123152048	Frame_Shift_Del	T	-	p.I1866fs
LIHC	TCGA-DD-A1EG-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4,ENST00000425647.1	chr9	123184970:123185019:123199572:123199805:123201676:123202250,	123199573	123199805	123199580	123199580	Frame_Shift_Del	A	-	p.F1316fs
LIHC	TCGA-DD-A1EG-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123210172:123210404:123215733:123216151:123220727:123220800,	123215734	123216151	123216060	123216060	Frame_Shift_Del	T	-	p.T823fs
LIHC	TCGA-DD-A1EG-01	FBXW2	ENST00000474117.1,ENST00000608872.1	chr9	123540628:123540823:123550046:123550556:123555426:123555535,	123550047	123550556	123550074	123550074	Frame_Shift_Del	A	-	p.Y156fs
LIHC	TCGA-DD-A1EG-01	FBXW2	ENST00000453291.1	chr9	123540628:123540823:123550046:123550464:123555426:123555535,	123550047	123550464	123550074	123550074	Frame_Shift_Del	A	-	p.Y156fs
LIHC	TCGA-DD-A1EG-01	TRAF1	ENST00000540010.1	chr9	123685982:123686070:123688213:123688579:123688827:123688966,	123688214	123688579	123688316	123688316	Frame_Shift_Del	G	-	p.P13fs
LIHC	TCGA-DD-A1EG-01	C5	ENST00000223642.1	chr9	123714615:123715146:123716007:123716146:123719562:123719646,	123716008	123716146	123716101	123716101	Frame_Shift_Del	T	-	p.K1603fs
LIHC	TCGA-DD-A1EG-01	C5	ENST00000480188.1,ENST00000223642.1	chr9	123722525:123722615:123723759:123723843:123724948:123724985,	123723760	123723843	123723802	123723802	Frame_Shift_Del	T	-	p.I1516fs
LIHC	TCGA-DD-A1EG-01	C5	ENST00000223642.1	chr9	123738977:123739183:123742360:123742532:123744121:123744170,	123742361	123742532	123742529	123742529	Frame_Shift_Del	T	-	p.I1164fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000373855.1	chr9	123842583:123842756:123850573:123850821:123852552:123852683,	123850574	123850821	123850786	123850786	Frame_Shift_Del	A	-	p.E61fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000373865.2,ENST00000373855.1,ENST00000238341.5	chr9	123860663:123860850:123870079:123870273:123874736:123874856,	123870080	123870273	123870110	123870110	Frame_Shift_Del	A	-	p.E280fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000373865.2,ENST00000373855.1,ENST00000238341.5	chr9	123860663:123860850:123870079:123870273:123874736:123874856,	123870080	123870273	123870172	123870172	Frame_Shift_Del	A	-	p.K301fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000373855.1,ENST00000373851.2,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123887998:123888214:123898083:123898260:123900822:123900957,	123898084	123898260	123898137	123898137	Frame_Shift_Del	T	-	p.S693fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000431571.1,ENST00000373855.1,ENST00000373851.2,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123907120:123907237:123907521:123907663:123908385:123908534,	123907522	123907663	123907613	123907613	Frame_Shift_Del	A	-	p.Q1087fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000373855.1,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123910949:123911139:123912447:123912761:123914762:123914971,	123912448	123912761	123912504	123912504	Frame_Shift_Del	C	-	p.P1237fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000431571.1	chr9	123910949:123911139:123912447:123912583:123914762:123914971,	123912448	123912583	123912504	123912504	Frame_Shift_Del	C	-	p.P1237fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000373855.1,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123912447:123912761:123914762:123914971:123916998:123917191,	123914763	123914971	123914910	123914910	Frame_Shift_Del	A	-	p.K1371fs
LIHC	TCGA-DD-A1EG-01	CNTRL	ENST00000373845.2,ENST00000373855.1,ENST00000238341.5,ENST00000373850.1	chr9	123924331:123924549:123927220:123927378:123928384:123928458,	123927221	123927378	123927316	123927316	Frame_Shift_Del	A	-	p.Q1840fs
LIHC	TCGA-DD-A1EG-01	GSN	ENST00000477104.1	chr9	124060063:124060120:124062333:124062404:124064240:124064427,124043788:124043840:124062333:124062404:124064240:124064427,124048400:124048463:124062333:124062404:124064240:124064427,	124062334	124062404	124062385	124062385	Frame_Shift_Del	A	-	p.E2fs
LIHC	TCGA-DD-A1EG-01	GSN	ENST00000394353.2	chr9	124043788:124043840:124062342:124062404:124064240:124064427,	124062343	124062404	124062385	124062385	Frame_Shift_Del	A	-	p.E2fs
LIHC	TCGA-DD-A1EG-01	DAB2IP	ENST00000259371.2,ENST00000394340.3,ENST00000408936.3	chr9	124440956:124441060:124461603:124461737:124519291:124519355,	124461604	124461737	124461670	124461670	Frame_Shift_Del	A	-	p.N99fs
LIHC	TCGA-DD-A1EG-01	NDUFA8	ENST00000373768.3	chr9	124910390:124910556:124914523:124914687:124921905:124922066,	124914524	124914687	124914613	124914613	Frame_Shift_Del	C	-	p.E42fs
LIHC	TCGA-DD-A1EG-01	MRRF	ENST00000489572.1,ENST00000467864.1,ENST00000470366.1	chr9	125047447:125047566:125054027:125054119:125075505:125075609,125047447:125047566:125054027:125054119:125084818:125084957,125048317:125048445:125054027:125054119:125075505:125075609,	125054028	125054119	125054104	125054104	Frame_Shift_Del	G	-	p.R179fs
LIHC	TCGA-DD-A1EG-01	RABGAP1	ENST00000373647.4,ENST00000317419.7	chr9	125703368:125703372:125719289:125719488:125748493:125748695,125703368:125703372:125719289:125719488:125746763:125746867,	125719290	125719488	125719362	125719362	Frame_Shift_Del	A	-	p.G8fs
LIHC	TCGA-DD-A1EG-01	GOLGA1	ENST00000421514.1,ENST00000373555.4	chr9	127690527:127690564:127691494:127691569:127693594:127693685,	127691495	127691569	127691532	127691532	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-DD-A1EG-01	SCAI	ENST00000373549.4	chr9	127818154:127818286:127828268:127828337:127904911:127904956,	127828269	127828337	127828294	127828294	Frame_Shift_Del	C	-	p.E48fs
LIHC	TCGA-DD-A1EG-01	RABEPK	ENST00000373544.1,ENST00000394125.4,ENST00000394124.4,ENST00000373538.3	chr9	127965286:127965345:127969842:127970000:127982817:127982937,127965286:127965345:127969842:127970000:127975648:127975801,	127969843	127970000	127969907	127969907	Frame_Shift_Del	C	-	p.P41fs
LIHC	TCGA-DD-A1EG-01	GARNL3	ENST00000373387.4,ENST00000373386.2,ENST00000435213.2,ENST00000314904.5	chr9	130107681:130107756:130111202:130111314:130116124:130116223,	130111203	130111314	130111232	130111232	Frame_Shift_Del	T	-	p.N487fs
LIHC	TCGA-DD-A1EG-01	GARNL3	ENST00000373387.4,ENST00000373386.2,ENST00000435213.2,ENST00000314904.5	chr9	130119497:130119656:130127578:130127645:130145716:130145824,	130127579	130127645	130127584	130127584	Frame_Shift_Del	T	-	p.N700fs
LIHC	TCGA-DD-A1EG-01	LRSAM1	ENST00000373324.4,ENST00000323301.4,ENST00000300417.6,ENST00000373322.1	chr9	130217276:130217333:130217854:130217899:130219594:130219692,	130217855	130217899	130217869	130217869	Frame_Shift_Del	T	-	p.A48fs
LIHC	TCGA-DD-A1EG-01	STXBP1	ENST00000373302.3,ENST00000373299.1,ENST00000481942.1	chr9	130434329:130434395:130435459:130435540:130438082:130438221,	130435460	130435540	130435467	130435467	Frame_Shift_Del	C	-	p.T346fs
LIHC	TCGA-DD-A1EG-01	CIZ1	ENST00000357558.5,ENST00000393608.1,ENST00000372938.5,ENST00000415526.1,ENST00000541172.1,ENST00000277465.4,ENST00000538431.1,ENST00000372948.3,ENST00000325721.8,ENST00000372954.1,ENST00000471839.1,ENST00000476727.2	chr9	130929037:130929159:130929373:130929443:130931330:130931382,	130929374	130929443	130929435	130929435	Frame_Shift_Del	G	-	p.S794fs
LIHC	TCGA-DD-A1EG-01	URM1	ENST00000470840.1,ENST00000372847.1	chr9	131133649:131133694:131140273:131140385:131150094:131150174,	131140274	131140385	131140291	131140291	Frame_Shift_Del	T	-	p.L18fs
LIHC	TCGA-DD-A1EG-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131346560:131346804:131346999:131347122:131348026:131348244,	131347000	131347122	131347100	131347100	Frame_Shift_Del	G	-	p.K846fs
LIHC	TCGA-DD-A1EG-01	WDR34	ENST00000372715.2,ENST00000483181.1	chr9	131396973:131397200:131397370:131397538:131397936:131398046,	131397371	131397538	131397412	131397412	Frame_Shift_Del	G	-	p.L314fs
LIHC	TCGA-DD-A1EG-01	ZDHHC12	ENST00000452105.1,ENST00000372672.2	chr9	131484287:131484365:131484716:131484853:131486272:131486385,	131484717	131484853	131484812	131484812	Frame_Shift_Del	G	-	p.L62fs
LIHC	TCGA-DD-A1EG-01	ZDHHC12	ENST00000406904.2	chr9	131484287:131484365:131484716:131485018:131486272:131486385,	131484717	131485018	131484812	131484812	Frame_Shift_Del	G	-	p.L62fs
LIHC	TCGA-DD-A1EG-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131669722	131669722	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-DD-A1EG-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131671126	131671126	Frame_Shift_Del	G	-	p.V562fs
LIHC	TCGA-DD-A1EG-01	NUP188	ENST00000372577.2	chr9	131721293:131721413:131730784:131730996:131731678:131731793,	131730785	131730996	131730852	131730852	Frame_Shift_Del	T	-	p.I218fs
LIHC	TCGA-DD-A1EG-01	DOLPP1	ENST00000327812.8,ENST00000540102.1	chr9	131847301:131847386:131847485:131847585:131847796:131847895,131846946:131847047:131847485:131847585:131847796:131847895,	131847486	131847585	131847580	131847580	Frame_Shift_Del	T	-	p.Y119fs
LIHC	TCGA-DD-A1EG-01	HMCN2	ENST00000428715.1	chr9	133285957:133286039:133294158:133294428:133297963:133298113,	133294159	133294428	133294281	133294281	Frame_Shift_Del	C	-	p.P72fs
LIHC	TCGA-DD-A1EG-01	AIF1L	ENST00000372314.3,ENST00000372309.3,ENST00000372312.3,ENST00000372301.2,ENST00000247291.3	chr9	133989963:133990005:133993142:133993305:133995621:133995730,	133993143	133993305	133993279	133993279	Frame_Shift_Del	G	-	p.L139fs
LIHC	TCGA-DD-A1EG-01	NUP214	ENST00000451030.1,ENST00000525980.1,ENST00000359428.5,ENST00000411637.2	chr9	134027122:134027281:134034769:134034873:134038377:134038560,	134034770	134034873	134034863	134034863	Frame_Shift_Del	A	-	p.K845fs
LIHC	TCGA-DD-A1EG-01	POMT1	ENST00000419118.2	chr9	134379575:134379727:134381789:134381840:134382754:134382901,134378395:134378460:134381789:134381840:134384297:134384409,	134381790	134381840	134381813	134381813	Frame_Shift_Del	A	-	p.N85fs
LIHC	TCGA-DD-A1EG-01	POMT1	ENST00000419118.2	chr9	134379575:134379727:134381789:134381840:134382754:134382901,134378395:134378460:134381789:134381840:134384297:134384409,	134381790	134381840	134381815	134381815	Frame_Shift_Del	T	-	p.N85fs
LIHC	TCGA-DD-A1EG-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135202492	135202492	Frame_Shift_Del	A	-	p.L1498fs
LIHC	TCGA-DD-A1EG-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203230	135203230	Frame_Shift_Del	C	-	p.G1252fs
LIHC	TCGA-DD-A1EG-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203306	135203306	Frame_Shift_Del	A	-	p.C1227fs
LIHC	TCGA-DD-A1EG-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203484	135203484	Frame_Shift_Del	T	-	p.K1167fs
LIHC	TCGA-DD-A1EG-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135204020	135204020	Frame_Shift_Del	T	-	p.R989fs
LIHC	TCGA-DD-A1EG-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135205743	135205743	Frame_Shift_Del	A	-	p.F414fs
LIHC	TCGA-DD-A1EG-01	OBP2B	ENST00000473737.1	chr9	136083519:136083590:136083855:136083989:136084514:136084628,	136083856	136083989	136083910	136083910	Frame_Shift_Del	G	-	p.P51fs
LIHC	TCGA-DD-A1EG-01	ADAMTS13	ENST00000371929.3,ENST00000371916.1,ENST00000371910.1,ENST00000355699.2,ENST00000356589.2	chr9	136321737:136321841:136323031:136323216:136324095:136324507,	136323032	136323216	136323059	136323059	Frame_Shift_Del	G	-	p.W1307fs
LIHC	TCGA-DD-A1EG-01	BRD3	ENST00000473349.1	chr9	136899822:136899951:136901153:136901446:136906881:136906916,	136901154	136901446	136901171	136901171	Frame_Shift_Del	T	-	p.K640fs
LIHC	TCGA-DD-A1EG-01	COL5A1	ENST00000371817.3	chr9	137704450:137704558:137705828:137705882:137706642:137706750,	137705829	137705882	137705876	137705876	Frame_Shift_Del	C	-	p.G1300fs
LIHC	TCGA-DD-A1EG-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138713662	138713662	Frame_Shift_Del	C	-	p.D949fs
LIHC	TCGA-DD-A1EG-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138714331	138714331	Frame_Shift_Del	G	-	p.H726fs
LIHC	TCGA-DD-A1EG-01	GPSM1	ENST00000392945.3,ENST00000354753.2,ENST00000440944.1	chr9	139231377:139231529:139231897:139232021:139232302:139232418,	139231898	139232021	139231972	139231972	Frame_Shift_Del	C	-	p.T218fs
LIHC	TCGA-DD-A1EG-01	INPP5E	ENST00000371712.3	chr9	139323070:139324259:139324728:139324865:139325453:139325546,	139324729	139324865	139324800	139324800	Frame_Shift_Del	G	-	p.P577fs
LIHC	TCGA-DD-A1EG-01	NOTCH1	ENST00000277541.6	chr9	139412203:139412389:139412588:139412744:139413042:139413276,	139412589	139412744	139412677	139412677	Frame_Shift_Del	G	-	p.T389fs
LIHC	TCGA-DD-A1EG-01	EGFL7	ENST00000371699.1,ENST00000308874.7,ENST00000406555.3,ENST00000492862.2	chr9	139560243:139560269:139562692:139562814:139563008:139563125,139559146:139559237:139562692:139562814:139563008:139563125,	139562693	139562814	139562789	139562789	Frame_Shift_Del	G	-	p.G19fs
LIHC	TCGA-DD-A1EG-01	TRAF2	ENST00000359662.3	chr9	139794045:139794124:139794873:139795128:139802521:139802670,	139794874	139795128	139794956	139794956	Frame_Shift_Del	C	-	p.T117fs
LIHC	TCGA-DD-A1EG-01	TRAF2	ENST00000247668.2,ENST00000429509.1,ENST00000419057.1,ENST00000536468.1	chr9	139794045:139794124:139794873:139794972:139802521:139802670,	139794874	139794972	139794956	139794956	Frame_Shift_Del	C	-	p.T117fs
LIHC	TCGA-DD-A1EG-01	TRAF2	ENST00000359662.3	chr9	139794045:139794124:139794873:139795128:139802521:139802670,	139794874	139795128	139795034	139795034	Frame_Shift_Del	C	-	p.S143fs
LIHC	TCGA-DD-A1EG-01	GRIN1	ENST00000315048.3,ENST00000371553.3	chr9	140058210:140058356:140059637:140059748:140061862:140061986,140058210:140058356:140059637:140059748:140062225:140063207,	140059638	140059748	140059705	140059705	Frame_Shift_Del	C	-	p.T886fs
LIHC	TCGA-DD-A1EG-01	NSMF	ENST00000371468.1,ENST00000392812.4,ENST00000339554.3,ENST00000437259.1,ENST00000371475.3,ENST00000371474.3,ENST00000541195.1,ENST00000265663.7,ENST00000371472.2	chr9	140347187:140347271:140347507:140347632:140348182:140348272,	140347508	140347632	140347612	140347612	Frame_Shift_Del	G	-	p.H315fs
LIHC	TCGA-DD-A1EG-01	EHMT1	ENST00000371394.2,ENST00000462484.1,ENST00000334856.6,ENST00000462942.1,ENST00000460843.1	chr9	140638515:140638542:140646782:140646860:140648622:140648743,	140646783	140646860	140646789	140646789	Frame_Shift_Del	G	-	p.G393fs
LIHC	TCGA-DD-A1EG-01	EHMT1	ENST00000494249.1,ENST00000475564.1,ENST00000460843.1	chr9	140711890:140711977:140712511:140712590:140728800:140728976,	140712512	140712590	140712519	140712519	Frame_Shift_Del	G	-	p.G1157fs
LIHC	TCGA-DD-A1EG-01	CACNA1B	ENST00000277551.2,ENST00000371357.1,ENST00000371363.1,ENST00000371372.1,ENST00000277549.5,ENST00000371355.4	chr9	140952500:140952702:140953020:140953185:140953530:140953641,	140953021	140953185	140953126	140953126	Frame_Shift_Del	C	-	p.P668fs
LIHC	TCGA-DD-A1EG-01	DIP2C	ENST00000280886.6	chr10	320129:323517:327139:327263:329211:329386,	327140	327263	327206	327206	Frame_Shift_Del	C	-	p.G1451fs
LIHC	TCGA-DD-A1EG-01	IDI1	ENST00000429642.1	chr10	1089240:1089333:1089938:1090111:1094203:1094337,	1089939	1090111	1090001	1090001	Frame_Shift_Del	T	-	p.N84fs
LIHC	TCGA-DD-A1EG-01	WDR37	ENST00000263150.4,ENST00000482165.1,ENST00000358220.1	chr10	1170157:1170292:1170849:1170964:1175152:1175192,	1170850	1170964	1170870	1170870	Frame_Shift_Del	A	-	p.Q420fs
LIHC	TCGA-DD-A1EG-01	WDR37	ENST00000263150.4,ENST00000482165.1,ENST00000358220.1	chr10	1170157:1170292:1170849:1170964:1175152:1175192,	1170850	1170964	1170886	1170886	Frame_Shift_Del	C	-	p.L425fs
LIHC	TCGA-DD-A1EG-01	PFKP	ENST00000381075.2	chr10	3141466:3141544:3143112:3143192:3143556:3143746,	3143113	3143192	3143122	3143122	Frame_Shift_Del	G	-	p.R57fs
LIHC	TCGA-DD-A1EG-01	AKR1C1	ENST00000442997.1,ENST00000434459.2,ENST00000380872.4,ENST00000380859.1	chr10	5009118:5009235:5010500:5010578:5011013:5011136,	5010501	5010578	5010509	5010509	Frame_Shift_Del	G	-	p.E127fs
LIHC	TCGA-DD-A1EG-01	AKR1C2	ENST00000604507.1,ENST00000380753.4,ENST00000407674.1	chr10	5040816:5040939:5042741:5042858:5043705:5043873,5041391:5041469:5042741:5042858:5043705:5043783,	5042742	5042858	5042797	5042797	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A1EG-01	AKR1C2	ENST00000460124.1	chr10	5040816:5040939:5041391:5042858:5043705:5043873,	5041392	5042858	5042797	5042797	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A1EG-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000380554.3	chr10	5144676:5144842:5147786:5147869:5149652:5149872,	5147787	5147869	5147824	5147824	Frame_Shift_Del	C	-	p.A295fs
LIHC	TCGA-DD-A1EG-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5788880	5788880	Frame_Shift_Del	A	-	p.K1166fs
LIHC	TCGA-DD-A1EG-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5791337	5791337	Frame_Shift_Del	A	-	p.K1985fs
LIHC	TCGA-DD-A1EG-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5791354	5791354	Frame_Shift_Del	A	-	p.I1990fs
LIHC	TCGA-DD-A1EG-01	GDI2	ENST00000380181.3,ENST00000380191.4,ENST00000380132.4	chr10	5808456:5808601:5810175:5810347:5815804:5815904,	5810176	5810347	5810288	5810288	Frame_Shift_Del	T	-	p.K293fs
LIHC	TCGA-DD-A1EG-01	GDI2	ENST00000380181.3,ENST00000456041.1,ENST00000447751.1,ENST00000380191.4,ENST00000380132.4	chr10	5815804:5815904:5827104:5827236:5827814:5827885,	5827105	5827236	5827110	5827110	Frame_Shift_Del	A	-	p.F238fs
LIHC	TCGA-DD-A1EG-01	IL15RA	ENST00000397255.3,ENST00000397248.2,ENST00000525219.2,ENST00000379977.3,ENST00000534292.1	chr10	6002357:6002530:6005705:6005804:6019367:6019455,6002357:6002530:6005705:6005804:6008107:6008302,	6005706	6005804	6005717	6005717	Frame_Shift_Del	G	-	p.P88fs
LIHC	TCGA-DD-A1EG-01	IL15RA	ENST00000453922.1	chr10	6002357:6002530:6005705:6005801:6008107:6008302,	6005706	6005801	6005717	6005717	Frame_Shift_Del	G	-	p.P88fs
LIHC	TCGA-DD-A1EG-01	IL15RA	ENST00000379972.2	chr10	6005705:6005804:6008107:6008302:6019739:6019798,6005705:6005804:6008107:6008302:6019367:6019455,6002357:6002530:6008107:6008302:6019367:6019455,6002357:6002530:6008107:6008302:6019739:6019798,6002329:6002431:6008107:6008302:6019739:6019798,	6008108	6008302	6008124	6008124	Frame_Shift_Del	G	-	p.P53fs
LIHC	TCGA-DD-A1EG-01	IL2RA	ENST00000379959.3	chr10	6061832:6061904:6063440:6063656:6066206:6066317,	6063441	6063656	6063483	6063483	Frame_Shift_Del	G	-	p.Q181fs
LIHC	TCGA-DD-A1EG-01	IL2RA	ENST00000256876.6	chr10	6061832:6061904:6063467:6063656:6066206:6066317,	6063468	6063656	6063483	6063483	Frame_Shift_Del	G	-	p.Q181fs
LIHC	TCGA-DD-A1EG-01	PFKFB3	ENST00000540253.1,ENST00000379782.3,ENST00000379789.4,ENST00000360521.2,ENST00000477914.1,ENST00000461744.1,ENST00000490474.1,ENST00000467491.1,ENST00000379785.1,ENST00000379775.4,ENST00000317350.4	chr10	6259097:6259154:6261531:6261656:6262620:6262828,	6261532	6261656	6261549	6261549	Frame_Shift_Del	C	-	p.S172fs
LIHC	TCGA-DD-A1EG-01	PFKFB3	ENST00000536985.1	chr10	6259097:6259154:6261481:6261656:6262620:6262828,	6261482	6261656	6261549	6261549	Frame_Shift_Del	C	-	p.S172fs
LIHC	TCGA-DD-A1EG-01	ITIH5	ENST00000446830.2,ENST00000298441.6,ENST00000256861.6	chr10	7605078:7605347:7607992:7608370:7611630:7611747,	7607993	7608370	7608076	7608076	Frame_Shift_Del	T	-	p.K815fs
LIHC	TCGA-DD-A1EG-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7762818:7762926:7763611:7763740:7765413:7765530,	7763612	7763740	7763711	7763711	Frame_Shift_Del	A	-	p.K280fs
LIHC	TCGA-DD-A1EG-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7780583:7780721:7785108:7785222:7786044:7786243,	7785109	7785222	7785125	7785125	Frame_Shift_Del	T	-	p.H704fs
LIHC	TCGA-DD-A1EG-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12009339:12009453:12021055:12021164:12039670:12039756,	12021056	12021164	12021145	12021145	Frame_Shift_Del	A	-	p.Y622fs
LIHC	TCGA-DD-A1EG-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12046528:12046726:12056022:12056183:12070743:12071523,	12056023	12056183	12056070	12056070	Frame_Shift_Del	A	-	p.L420fs
LIHC	TCGA-DD-A1EG-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12070747	12070747	Frame_Shift_Del	T	-	p.N381fs
LIHC	TCGA-DD-A1EG-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12070781	12070781	Frame_Shift_Del	C	-	p.D370fs
LIHC	TCGA-DD-A1EG-01	DHTKD1	ENST00000437298.1	chr10	12111022:12111186:12123470:12123626:12126538:12126750,	12123471	12123626	12123538	12123538	Frame_Shift_Del	C	-	p.N74fs
LIHC	TCGA-DD-A1EG-01	CDC123	ENST00000455773.3,ENST00000429258.2,ENST00000281141.4,ENST00000378900.2	chr10	12252288:12252321:12257738:12257834:12259359:12259466,	12257739	12257834	12257793	12257793	Frame_Shift_Del	G	-	p.G99fs
LIHC	TCGA-DD-A1EG-01	CDC123	ENST00000442050.1	chr10	12252288:12252321:12259359:12259466:12272946:12272977,	12259360	12259466	12259417	12259417	Frame_Shift_Del	T	-	p.F131fs
LIHC	TCGA-DD-A1EG-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13167945:13168039:13169744:13169903:13174066:13174197,	13169745	13169903	13169785	13169785	Frame_Shift_Del	A	-	p.E428fs
LIHC	TCGA-DD-A1EG-01	PHYH	ENST00000263038.4,ENST00000396913.2,ENST00000396920.3	chr10	13319842:13320354:13322975:13323110:13325689:13325806,	13322976	13323110	13323003	13323003	Frame_Shift_Del	A	-	p.F295fs
LIHC	TCGA-DD-A1EG-01	BEND7	ENST00000341083.3	chr10	13489265:13489319:13494538:13494658:13522898:13522976,	13494539	13494658	13494607	13494607	Frame_Shift_Del	G	-	p.P320fs
LIHC	TCGA-DD-A1EG-01	BEND7	ENST00000396900.2,ENST00000466271.1	chr10	13538787:13538888:13541777:13542080:13568137:13568221,	13541778	13542080	13541948	13541948	Frame_Shift_Del	A	-	p.L41fs
LIHC	TCGA-DD-A1EG-01	BEND7	ENST00000396898.2	chr10	13538787:13538888:13541738:13542080:13568137:13568221,	13541739	13542080	13541948	13541948	Frame_Shift_Del	A	-	p.L41fs
LIHC	TCGA-DD-A1EG-01	FRMD4A	ENST00000378503.1,ENST00000358621.4,ENST00000357447.2	chr10	13696415:13696512:13698635:13699522:13701322:13701490,	13698636	13699522	13698768	13698768	Frame_Shift_Del	C	-	p.E941fs
LIHC	TCGA-DD-A1EG-01	DCLRE1C	ENST00000378249.1,ENST00000378254.1,ENST00000378255.1,ENST00000378289.4,ENST00000378246.2,ENST00000378278.2,ENST00000453695.2,ENST00000396817.2,ENST00000378258.1,ENST00000357717.2	chr10	14968841:14968896:14970014:14970151:14974852:14974954,	14970015	14970151	14970031	14970031	Frame_Shift_Del	T	-	p.T181fs
LIHC	TCGA-DD-A1EG-01	RSU1	ENST00000345264.5,ENST00000377921.3,ENST00000464074.2,ENST00000602389.1,ENST00000377911.1	chr10	16794537:16794652:16794916:16794999:16796869:16796988,	16794917	16794999	16794962	16794962	Frame_Shift_Del	A	-	p.F146fs
LIHC	TCGA-DD-A1EG-01	NSUN6	ENST00000377304.4	chr10	18837040:18837166:18840751:18840900:18874877:18875022,	18840752	18840900	18840834	18840834	Frame_Shift_Del	C	-	p.G330fs
LIHC	TCGA-DD-A1EG-01	NEBL	ENST00000377122.4,ENST00000377119.1	chr10	21157592:21157694:21158668:21158770:21169722:21169833,	21158669	21158770	21158740	21158740	Frame_Shift_Del	G	-	p.H171fs
LIHC	TCGA-DD-A1EG-01	MLLT10	ENST00000377072.3,ENST00000476557.1,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21846549:21846753:21875222:21875277:21884259:21884307,21827761:21827841:21875222:21875277:21884259:21884307,	21875223	21875277	21875274	21875274	Frame_Shift_Del	G	-	p.G99fs
LIHC	TCGA-DD-A1EG-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962452	21962452	Frame_Shift_Del	G	-	p.G410fs
LIHC	TCGA-DD-A1EG-01	DNAJC1	ENST00000376980.3	chr10	22094908:22095028:22171210:22171368:22193450:22193541,	22171211	22171368	22171214	22171214	Frame_Shift_Del	T	-	p.K325fs
LIHC	TCGA-DD-A1EG-01	DNAJC1	ENST00000376980.3	chr10	22171210:22171368:22193450:22193541:22207707:22207801,	22193451	22193541	22193526	22193526	Frame_Shift_Del	A	-	p.Y249fs
LIHC	TCGA-DD-A1EG-01	ARMC3	ENST00000484642.1,ENST00000298032.5,ENST00000409049.3,ENST00000409983.3	chr10	23250867:23251007:23257234:23257418:23270268:23270382,	23257235	23257418	23257322	23257322	Frame_Shift_Del	G	-	p.G275fs
LIHC	TCGA-DD-A1EG-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24825702:24825822:24831621:24831699:24833909:24834032,24825702:24825822:24831621:24831699:24831811:24832637,	24831622	24831699	24831678	24831678	Frame_Shift_Del	C	-	p.G880fs
LIHC	TCGA-DD-A1EG-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909355	24909355	Frame_Shift_Del	T	-	p.N490fs
LIHC	TCGA-DD-A1EG-01	GPR158	ENST00000376351.3	chr10	25684839:25684942:25701178:25701402:25755579:25755648,	25701179	25701402	25701200	25701200	Frame_Shift_Del	T	-	p.I378fs
LIHC	TCGA-DD-A1EG-01	APBB1IP	ENST00000376236.4	chr10	26800675:26800835:26802467:26802589:26822367:26822454,	26802468	26802589	26802473	26802473	Frame_Shift_Del	T	-	p.F234fs
LIHC	TCGA-DD-A1EG-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27303422:27303640:27306430:27306721:27311486:27311616,	27306431	27306721	27306582	27306582	Frame_Shift_Del	T	-	p.K1453fs
LIHC	TCGA-DD-A1EG-01	MPP7	ENST00000375719.3,ENST00000540098.1,ENST00000337532.5,ENST00000375732.1,ENST00000496637.2,ENST00000481244.1	chr10	28438910:28438988:28491081:28491200:28527496:28527629,	28491082	28491200	28491102	28491102	Frame_Shift_Del	T	-	p.S46fs
LIHC	TCGA-DD-A1EG-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760080	29760080	Frame_Shift_Del	T	-	p.E1875fs
LIHC	TCGA-DD-A1EG-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29821546	29821546	Frame_Shift_Del	C	-	p.E584fs
LIHC	TCGA-DD-A1EG-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29821677	29821677	Frame_Shift_Del	T	-	p.K540fs
LIHC	TCGA-DD-A1EG-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29822295	29822295	Frame_Shift_Del	G	-	p.P334fs
LIHC	TCGA-DD-A1EG-01	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31137868	31137868	Frame_Shift_Del	G	-	p.P440fs
LIHC	TCGA-DD-A1EG-01	CCDC7	ENST00000277657.6,ENST00000362006.5	chr10	32762894:32762951:32780849:32780925:32806872:32806903,	32780850	32780925	32780901	32780901	Frame_Shift_Del	A	-	p.E283fs
LIHC	TCGA-DD-A1EG-01	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33200454:33200598:33200813:33201052:33208812:33209012,	33200814	33201052	33200820	33200820	Frame_Shift_Del	A	-	p.C568fs
LIHC	TCGA-DD-A1EG-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000455749.1,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000374875.1,ENST00000265371.4	chr10	33542955:33543122:33545243:33545399:33552573:33552632,	33545244	33545399	33545293	33545293	Frame_Shift_Del	T	-	p.K255fs
LIHC	TCGA-DD-A1EG-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000265371.4	chr10	33552573:33552801:33559602:33559784:33619635:33619810,	33559603	33559784	33559743	33559743	Frame_Shift_Del	C	-	p.G97fs
LIHC	TCGA-DD-A1EG-01	PARD3	ENST00000374789.3,ENST00000340077.5,ENST00000374773.1,ENST00000346874.4,ENST00000374788.3	chr10	34648998:34649187:34663801:34663930:34666894:34667028,34661425:34661464:34663801:34663930:34666894:34667034,	34663802	34663930	34663882	34663882	Frame_Shift_Del	G	-	p.L531fs
LIHC	TCGA-DD-A1EG-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000544292.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34671467:34671850:34673056:34673182:34688257:34688341,	34673057	34673182	34673119	34673119	Frame_Shift_Del	A	-	p.F318fs
LIHC	TCGA-DD-A1EG-01	CUL2	ENST00000374742.1,ENST00000374746.1,ENST00000374754.4,ENST00000374748.1,ENST00000374749.3,ENST00000602371.1,ENST00000374751.3,ENST00000537177.1,ENST00000421317.1	chr10	35333699:35333796:35338610:35338693:35343361:35343467,	35338611	35338693	35338673	35338673	Frame_Shift_Del	C	-	p.R148fs
LIHC	TCGA-DD-A1EG-01	CCNY	ENST00000339497.5,ENST00000374706.1,ENST00000265375.9,ENST00000492478.1,ENST00000374704.4	chr10	35814891:35814927:35818900:35818958:35819051:35819171,	35818901	35818958	35818949	35818949	Frame_Shift_Del	C	-	p.H150fs
LIHC	TCGA-DD-A1EG-01	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000475522.1	chr10	37476885:37476947:37478394:37478485:37481991:37482020,	37478395	37478485	37478475	37478475	Frame_Shift_Del	A	-	p.G897fs
LIHC	TCGA-DD-A1EG-01	BMS1	ENST00000374518.5	chr10	43282615:43282695:43285770:43285959:43287074:43287217,	43285771	43285959	43285795	43285795	Frame_Shift_Del	T	-	p.F158fs
LIHC	TCGA-DD-A1EG-01	ZNF485	ENST00000374435.3,ENST00000361807.3,ENST00000430885.1	chr10	44102444:44102522:44104061:44104188:44104702:44104798,	44104062	44104188	44104147	44104147	Frame_Shift_Del	G	-	p.R37fs
LIHC	TCGA-DD-A1EG-01	RASSF4	ENST00000374417.2,ENST00000472561.1	chr10	45467241:45467296:45477968:45478111:45479388:45479561,45467241:45467296:45477968:45478111:45479469:45479561,45467241:45467296:45477968:45478111:45480260:45480418,	45477969	45478111	45478070	45478070	Frame_Shift_Del	C	-	p.L62fs
LIHC	TCGA-DD-A1EG-01	RASSF4	ENST00000462822.1	chr10	45467241:45467296:45477972:45478111:45479317:45479360,	45477973	45478111	45478070	45478070	Frame_Shift_Del	C	-	p.L62fs
LIHC	TCGA-DD-A1EG-01	MARCH8	ENST00000453424.2	chr10	45956834:45956859:45958598:45959444:45959686:45959775,	45958599	45959444	45959080	45959080	Frame_Shift_Del	T	-	p.R203fs
LIHC	TCGA-DD-A1EG-01	ZFAND4	ENST00000497028.1	chr10	46148431:46148507:46158989:46159290:46167697:46167722,46147413:46147481:46158989:46159290:46167719:46168210,	46158990	46159290	46159041	46159041	Frame_Shift_Del	A	-	p.S45fs
LIHC	TCGA-DD-A1EG-01	ARHGAP22	ENST00000417247.2,ENST00000249601.4,ENST00000417912.2,ENST00000374172.1,ENST00000435790.2,ENST00000374170.1,ENST00000460425.1	chr10	49654600:49654662:49658303:49659183:49661346:49661468,	49658304	49659183	49659175	49659175	Frame_Shift_Del	G	-	p.L333fs
LIHC	TCGA-DD-A1EG-01	WDFY4	ENST00000325239.5,ENST00000413659.2	chr10	49982502:49982717:49983756:49983851:49984794:49984956,	49983757	49983851	49983802	49983802	Frame_Shift_Del	A	-	p.T938fs
LIHC	TCGA-DD-A1EG-01	OGDHL	ENST00000432695.1,ENST00000374103.4,ENST00000419399.1	chr10	50947706:50947885:50948755:50948883:50950873:50951024,	50948756	50948883	50948846	50948846	Frame_Shift_Del	G	-	p.R685fs
LIHC	TCGA-DD-A1EG-01	PARG	ENST00000402038.3	chr10	51073366:51073427:51077521:51077601:51087718:51087876,	51077522	51077601	51077558	51077558	Frame_Shift_Del	T	-	p.T193fs
LIHC	TCGA-DD-A1EG-01	SGMS1	ENST00000361781.2	chr10	52087037:52087082:52103251:52104105:52193235:52193316,	52103252	52104105	52103593	52103593	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A1EG-01	FAM13C	ENST00000422313.2,ENST00000442566.3,ENST00000513059.1,ENST00000468840.2,ENST00000419214.2,ENST00000277705.6,ENST00000373868.2,ENST00000435852.2,ENST00000373867.3	chr10	61062560:61062624:61083747:61083866:61112029:61112113,	61083748	61083866	61083790	61083790	Frame_Shift_Del	T	-	p.N52fs
LIHC	TCGA-DD-A1EG-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61414017	61414017	Frame_Shift_Del	T	-	p.N256fs
LIHC	TCGA-DD-A1EG-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828508	61828508	Frame_Shift_Del	C	-	p.G4045fs
LIHC	TCGA-DD-A1EG-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828580	61828580	Frame_Shift_Del	T	-	p.K4020fs
LIHC	TCGA-DD-A1EG-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830591	61830591	Frame_Shift_Del	A	-	p.S3350fs
LIHC	TCGA-DD-A1EG-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830822	61830822	Frame_Shift_Del	A	-	p.Y3273fs
LIHC	TCGA-DD-A1EG-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61835789	61835789	Frame_Shift_Del	T	-	p.N1617fs
LIHC	TCGA-DD-A1EG-01	CDK1	ENST00000395284.3,ENST00000519078.2	chr10	62545428:62545545:62547817:62547988:62551647:62551727,	62547818	62547988	62547955	62547955	Frame_Shift_Del	T	-	p.A152fs
LIHC	TCGA-DD-A1EG-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62631229:62631409:62631942:62632048:62634711:62634795,	62631943	62632048	62631961	62631961	Frame_Shift_Del	T	-	p.I635fs
LIHC	TCGA-DD-A1EG-01	RHOBTB1	ENST00000490827.1	chr10	62631229:62631409:62631800:62632048:62634711:62634795,	62631801	62632048	62631961	62631961	Frame_Shift_Del	T	-	p.I635fs
LIHC	TCGA-DD-A1EG-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62647969:62648943:62652567:62652753:62670644:62670748,	62652568	62652753	62652692	62652692	Frame_Shift_Del	T	-	p.S120fs
LIHC	TCGA-DD-A1EG-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000327520.7,ENST00000542921.1,ENST00000399251.1	chr10	64945974:64946143:64948927:64949206:64950653:64950868,	64948928	64949206	64949137	64949137	Frame_Shift_Del	T	-	p.I2121fs
LIHC	TCGA-DD-A1EG-01	REEP3	ENST00000298249.4,ENST00000373758.4	chr10	65358932:65359043:65369946:65370094:65379414:65379560,	65369947	65370094	65370057	65370057	Frame_Shift_Del	A	-	p.A176fs
LIHC	TCGA-DD-A1EG-01	CTNNA3	ENST00000433211.2,ENST00000373744.4	chr10	68280374:68280531:68381449:68381542:68526021:68526174,	68381450	68381542	68381494	68381494	Frame_Shift_Del	T	-	p.I444fs
LIHC	TCGA-DD-A1EG-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000473533.2,ENST00000395187.2,ENST00000412272.2	chr10	69752362:69752439:69773782:69773943:69785302:69785433,	69773783	69773943	69773811	69773811	Frame_Shift_Del	G	-	p.P347fs
LIHC	TCGA-DD-A1EG-01	RUFY2	ENST00000388768.2,ENST00000466493.1,ENST00000602465.1	chr10	70137931:70138427:70139180:70139278:70140988:70141013,70136609:70136729:70139180:70139278:70140988:70141013,	70139181	70139278	70139212	70139212	Frame_Shift_Del	T	-	p.I427fs
LIHC	TCGA-DD-A1EG-01	RUFY2	ENST00000454950.2,ENST00000388768.2,ENST00000399200.2,ENST00000466493.1,ENST00000602465.1	chr10	70143807:70143909:70145815:70145885:70152894:70152960,	70145816	70145885	70145841	70145841	Frame_Shift_Del	T	-	p.K267fs
LIHC	TCGA-DD-A1EG-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000399200.2,ENST00000466493.1,ENST00000602465.1	chr10	70152894:70152960:70153831:70153893:70154084:70154208,	70153832	70153893	70153841	70153841	Frame_Shift_Del	T	-	p.N227fs
LIHC	TCGA-DD-A1EG-01	CCAR1	ENST00000539250.1,ENST00000536012.1,ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000541012.1,ENST00000543225.1	chr10	70520763:70520949:70525644:70525836:70530962:70531058,	70525645	70525836	70525737	70525737	Frame_Shift_Del	A	-	p.P733fs
LIHC	TCGA-DD-A1EG-01	CCAR1	ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000265872.6	chr10	70547899:70548085:70549466:70549672:70550963:70551023,	70549467	70549672	70549538	70549538	Frame_Shift_Del	A	-	p.K1088fs
LIHC	TCGA-DD-A1EG-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645020	70645020	Frame_Shift_Del	A	-	p.K491fs
LIHC	TCGA-DD-A1EG-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645049	70645049	Frame_Shift_Del	T	-	p.G499fs
LIHC	TCGA-DD-A1EG-01	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000373382.1,ENST00000263559.6	chr10	70925797:70925866:70928244:70928387:70930911:70931016,	70928245	70928387	70928379	70928379	Frame_Shift_Del	A	-	p.K288fs
LIHC	TCGA-DD-A1EG-01	COL13A1	ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398968.3,ENST00000398973.3,ENST00000398972.3	chr10	71631939:71631966:71634883:71634919:71637794:71637821,71631939:71631966:71634883:71634919:71640258:71640309,	71634884	71634919	71634890	71634890	Frame_Shift_Del	A	-	p.K136fs
LIHC	TCGA-DD-A1EG-01	PPA1	ENST00000373232.3	chr10	71964628:71964671:71966019:71966089:71968960:71969046,	71966020	71966089	71966062	71966062	Frame_Shift_Del	G	-	p.P251fs
LIHC	TCGA-DD-A1EG-01	TBATA	ENST00000456372.2,ENST00000299290.1	chr10	72538256:72538389:72539348:72539498:72541556:72541792,72538312:72538392:72539348:72539498:72541556:72541792,	72539349	72539498	72539418	72539418	Frame_Shift_Del	T	-	p.M120fs
LIHC	TCGA-DD-A1EG-01	CDH23	ENST00000224721.6,ENST00000466757.3,ENST00000299366.7,ENST00000442677.2	chr10	73439143:73439249:73442201:73442329:73447403:73447476,	73442202	73442329	73442287	73442287	Frame_Shift_Del	C	-	p.N653fs
LIHC	TCGA-DD-A1EG-01	MICU1	ENST00000361114.5,ENST00000603011.1,ENST00000604238.1,ENST00000401998.3,ENST00000398761.4	chr10	74310936:74311099:74322652:74322821:74326390:74326517,	74322653	74322821	74322720	74322720	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-DD-A1EG-01	MCU	ENST00000536019.1,ENST00000604679.1,ENST00000357157.6,ENST00000604372.1,ENST00000605597.1,ENST00000373053.3	chr10	74594116:74594186:74618934:74619105:74620180:74620285,	74618935	74619105	74618947	74618947	Frame_Shift_Del	T	-	p.V29fs
LIHC	TCGA-DD-A1EG-01	PPP3CB	ENST00000545874.1,ENST00000495897.1,ENST00000394829.2,ENST00000394828.2,ENST00000342558.3,ENST00000394822.2,ENST00000360663.5	chr10	75227310:75227436:75230444:75230539:75230644:75230722,	75230445	75230539	75230481	75230481	Frame_Shift_Del	A	-	p.S316fs
LIHC	TCGA-DD-A1EG-01	USP54	ENST00000466048.2,ENST00000339859.4,ENST00000408019.1,ENST00000428547.1	chr10	75260412:75260596:75264607:75264748:75265080:75265184,75260412:75260596:75264607:75264748:75265065:75265184,	75264608	75264748	75264684	75264684	Frame_Shift_Del	A	-	p.L1412fs
LIHC	TCGA-DD-A1EG-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525596	75525596	Frame_Shift_Del	A	-	p.K469fs
LIHC	TCGA-DD-A1EG-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525630	75525630	Frame_Shift_Del	C	-	p.S480fs
LIHC	TCGA-DD-A1EG-01	SEC24C	ENST00000411652.2,ENST00000339365.2,ENST00000535742.1,ENST00000345254.4,ENST00000540668.1	chr10	75529593:75529773:75530037:75530229:75530466:75530556,	75530038	75530229	75530189	75530189	Frame_Shift_Del	T	-	p.L1005fs
LIHC	TCGA-DD-A1EG-01	CAMK2G	ENST00000472912.1,ENST00000444854.2,ENST00000441192.1,ENST00000322680.3,ENST00000433289.1	chr10	75583797:75583842:75585036:75585105:75587846:75587879,75583797:75583842:75585036:75585105:75597225:75597269,	75585037	75585105	75585086	75585086	Frame_Shift_Del	T	-	p.N369fs
LIHC	TCGA-DD-A1EG-01	CAMK2G	ENST00000474131.1	chr10	75583797:75583842:75585078:75585105:75597225:75597269,	75585079	75585105	75585086	75585086	Frame_Shift_Del	T	-	p.N369fs
LIHC	TCGA-DD-A1EG-01	CAMK2G	ENST00000477652.1,ENST00000305762.7,ENST00000351293.3,ENST00000472912.1,ENST00000423381.1,ENST00000322680.3,ENST00000372765.1,ENST00000433289.1,ENST00000394762.2,ENST00000322635.3	chr10	75607745:75607840:75608283:75608367:75608770:75608873,	75608284	75608367	75608352	75608352	Frame_Shift_Del	G	-	p.P178fs
LIHC	TCGA-DD-A1EG-01	CAMK2G	ENST00000477652.1,ENST00000305762.7,ENST00000351293.3,ENST00000472912.1,ENST00000423381.1,ENST00000322680.3,ENST00000372765.1,ENST00000433289.1,ENST00000394762.2,ENST00000322635.3	chr10	75607745:75607840:75608283:75608367:75608770:75608873,	75608284	75608367	75608363	75608363	Frame_Shift_Del	A	-	p.F174fs
LIHC	TCGA-DD-A1EG-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R184fs
LIHC	TCGA-DD-A1EG-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76729777:76729859:76732264:76732397:76735156:76735212,	76732265	76732397	76732308	76732308	Frame_Shift_Del	A	-	p.R324fs
LIHC	TCGA-DD-A1EG-01	DUSP13	ENST00000372702.3,ENST00000491677.2	chr10	76863750:76863855:76865418:76865626:76868766:76868891,76863750:76863855:76865418:76865626:76867749:76867967,	76865419	76865626	76865528	76865528	Frame_Shift_Del	C	-	p.V156fs
LIHC	TCGA-DD-A1EG-01	SAMD8	ENST00000372690.3,ENST00000542569.1,ENST00000372687.4	chr10	76924402:76924498:76928298:76928416:76935823:76935974,	76928299	76928416	76928366	76928366	Frame_Shift_Del	T	-	p.F248fs
LIHC	TCGA-DD-A1EG-01	DLG5	ENST00000475613.2,ENST00000372388.2,ENST00000424842.1,ENST00000372391.2,ENST00000463362.1,ENST00000459739.1	chr10	79556208:79556352:79565422:79565619:79566515:79566686,	79565423	79565619	79565499	79565499	Frame_Shift_Del	T	-	p.K1696fs
LIHC	TCGA-DD-A1EG-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79580992	79580992	Frame_Shift_Del	C	-	p.D1084fs
LIHC	TCGA-DD-A1EG-01	POLR3A	ENST00000473588.2	chr10	79767459:79767624:79769621:79769749:79770228:79770298,	79769622	79769749	79769657	79769657	Frame_Shift_Del	T	-	p.I579fs
LIHC	TCGA-DD-A1EG-01	ZMIZ1	ENST00000334512.5,ENST00000478357.1,ENST00000472035.1	chr10	81036937:81037082:81049531:81049646:81050715:81050842,	81049532	81049646	81049544	81049544	Frame_Shift_Del	C	-	p.F146fs
LIHC	TCGA-DD-A1EG-01	ZCCHC24	ENST00000372336.3,ENST00000372333.3	chr10	81145792:81146214:81154031:81154196:81192313:81192514,	81154032	81154196	81154153	81154153	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-DD-A1EG-01	SFTPA2	ENST00000372325.2,ENST00000372327.5,ENST00000417041.1	chr10	81317807:81317885:81318641:81318761:81319067:81319256,	81318642	81318761	81318666	81318666	Frame_Shift_Del	C	-	p.E90fs
LIHC	TCGA-DD-A1EG-01	ANXA11	ENST00000372231.3,ENST00000535999.1,ENST00000438331.1,ENST00000422982.3,ENST00000360615.4,ENST00000537102.1,ENST00000265447.4	chr10	81926981:81927069:81928724:81929114:81930555:81930671,	81928725	81929114	81928910	81928910	Frame_Shift_Del	C	-	p.A126fs
LIHC	TCGA-DD-A1EG-01	TSPAN14	ENST00000372164.3	chr10	82264483:82264534:82266983:82267130:82269056:82269227,82264483:82264534:82266983:82267130:82271899:82272025,82248972:82249070:82266983:82267130:82269056:82269227,	82266984	82267130	82267031	82267031	Frame_Shift_Del	C	-	p.D60fs
LIHC	TCGA-DD-A1EG-01	TSPAN14	ENST00000372157.2	chr10	82264483:82264534:82266954:82267130:82269056:82269227,	82266955	82267130	82267031	82267031	Frame_Shift_Del	C	-	p.D60fs
LIHC	TCGA-DD-A1EG-01	TSPAN14	ENST00000372157.2,ENST00000372158.1,ENST00000429989.3,ENST00000372164.3,ENST00000372156.1	chr10	82266983:82267130:82269056:82269227:82271899:82272025,	82269057	82269227	82269081	82269081	Frame_Shift_Del	T	-	p.F103fs
LIHC	TCGA-DD-A1EG-01	TSPAN14	ENST00000372157.2,ENST00000372158.1,ENST00000429989.3,ENST00000372164.3,ENST00000372156.1	chr10	82266983:82267130:82269056:82269227:82271899:82272025,	82269057	82269227	82269199	82269199	Frame_Shift_Del	A	-	p.Q141fs
LIHC	TCGA-DD-A1EG-01	SH2D4B	ENST00000470604.2	chr10	82369182:82369307:82394040:82394261:82403748:82406314,	82394041	82394261	82394125	82394125	Frame_Shift_Del	G	-	p.W356fs
LIHC	TCGA-DD-A1EG-01	GHITM	ENST00000372134.3	chr10	85909810:85909999:85910464:85910636:85912019:85913001,	85910465	85910636	85910626	85910626	Frame_Shift_Del	C	-	p.P315fs
LIHC	TCGA-DD-A1EG-01	LDB3	ENST00000361373.4	chr10	88452291:88452328:88466287:88466476:88469661:88469807,	88466288	88466476	88466394	88466394	Frame_Shift_Del	C	-	p.P335fs
LIHC	TCGA-DD-A1EG-01	BMPR1A	ENST00000372037.3	chr10	88659783:88659883:88671996:88672141:88676890:88677083,	88671997	88672141	88672121	88672121	Frame_Shift_Del	G	-	p.G219fs
LIHC	TCGA-DD-A1EG-01	MMRN2	ENST00000608090.1	chr10	88705126:88705233:88705317:88705568:88717134:88717328,	88705318	88705568	88705354	88705354	Frame_Shift_Del	G	-	p.P86fs
LIHC	TCGA-DD-A1EG-01	MMRN2	ENST00000474994.2	chr10	88705126:88705233:88705317:88705446:88728798:88728878,	88705318	88705446	88705354	88705354	Frame_Shift_Del	G	-	p.P86fs
LIHC	TCGA-DD-A1EG-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88820709:88820809:88822412:88822592:88827819:88827914,	88822413	88822592	88822543	88822543	Frame_Shift_Del	C	-	p.G264fs
LIHC	TCGA-DD-A1EG-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88827819:88827914:88834307:88834371:88835724:88835780,	88834308	88834371	88834319	88834319	Frame_Shift_Del	T	-	p.K212fs
LIHC	TCGA-DD-A1EG-01	ACTA2	ENST00000458208.1,ENST00000224784.6	chr10	90699263:90699455:90700985:90701147:90701541:90701626,	90700986	90701147	90701104	90701104	Frame_Shift_Del	G	-	p.P166fs
LIHC	TCGA-DD-A1EG-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91190055:91193083:91195816:91196076:91198360:91198940,	91195817	91196076	91196002	91196002	Frame_Shift_Del	G	-	p.P338fs
LIHC	TCGA-DD-A1EG-01	HTR7	ENST00000371721.3	chr10	92500577:92502285:92503607:92503705:92508595:92509351,	92503608	92503705	92503614	92503614	Frame_Shift_Del	A	-	p.C463fs
LIHC	TCGA-DD-A1EG-01	BTAF1	ENST00000265990.6,ENST00000544642.1	chr10	93757359:93757508:93767879:93768032:93768585:93768707,	93767880	93768032	93767970	93767970	Frame_Shift_Del	A	-	p.K1252fs
LIHC	TCGA-DD-A1EG-01	IDE	ENST00000265986.6,ENST00000496903.1,ENST00000371581.5	chr10	94220947:94221009:94223487:94223760:94225432:94225600,	94223488	94223760	94223688	94223688	Frame_Shift_Del	T	-	p.K854fs
LIHC	TCGA-DD-A1EG-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4,ENST00000463743.1	chr10	95066186:95066758:95069776:95069924:95070290:95070400,	95069777	95069924	95069871	95069871	Frame_Shift_Del	A	-	p.F2018fs
LIHC	TCGA-DD-A1EG-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371501.4	chr10	95082874:95082930:95083026:95083115:95085582:95085722,	95083027	95083115	95083071	95083071	Frame_Shift_Del	C	-	p.G1772fs
LIHC	TCGA-DD-A1EG-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4,ENST00000463743.1	chr10	95089420:95089591:95092977:95093069:95093514:95093670,	95092978	95093069	95093051	95093051	Frame_Shift_Del	T	-	p.I1580fs
LIHC	TCGA-DD-A1EG-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4,ENST00000463743.1	chr10	95103612:95103689:95107373:95107539:95109564:95109726,	95107374	95107539	95107385	95107385	Frame_Shift_Del	G	-	p.P1413fs
LIHC	TCGA-DD-A1EG-01	SLC35G1	ENST00000427197.1	chr10	95653778:95653968:95658327:95658508:95660508:95662490,	95658328	95658508	95658417	95658417	Frame_Shift_Del	A	-	p.K90fs
LIHC	TCGA-DD-A1EG-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	95995671:95995877:96005702:96006378:96012072:96012255,	96005703	96006378	96005968	96005968	Frame_Shift_Del	C	-	p.P896fs
LIHC	TCGA-DD-A1EG-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96064238:96064402:96066183:96066445:96068337:96068456,	96066184	96066445	96066228	96066228	Frame_Shift_Del	C	-	p.S1889fs
LIHC	TCGA-DD-A1EG-01	TBC1D12	ENST00000225235.4	chr10	96234424:96234540:96253121:96253204:96256811:96256929,	96253122	96253204	96253195	96253195	Frame_Shift_Del	A	-	p.K430fs
LIHC	TCGA-DD-A1EG-01	TBC1D12	ENST00000225235.4	chr10	96256811:96256929:96259977:96260084:96267023:96267104,	96259978	96260084	96260036	96260036	Frame_Shift_Del	G	-	p.G491fs
LIHC	TCGA-DD-A1EG-01	CYP2C18	ENST00000285979.6	chr10	96454673:96454834:96466540:96466717:96480152:96480294,	96466541	96466717	96466680	96466680	Frame_Shift_Del	G	-	p.R261fs
LIHC	TCGA-DD-A1EG-01	CYP2C8	ENST00000490994.2,ENST00000533320.1,ENST00000479946.2,ENST00000526814.1,ENST00000525991.1,ENST00000539050.1,ENST00000371270.3,ENST00000527953.1,ENST00000527420.1,ENST00000535898.1	chr10	96802646:96802834:96805566:96805708:96818091:96818228,	96805567	96805708	96805704	96805704	Frame_Shift_Del	T	-	p.K275fs
LIHC	TCGA-DD-A1EG-01	PDLIM1	ENST00000477757.1,ENST00000329399.6	chr10	96998390:96998442:97006971:97007123:97023620:97023817,	97006972	97007123	97007072	97007072	Frame_Shift_Del	T	-	p.E195fs
LIHC	TCGA-DD-A1EG-01	SORBS1	ENST00000393949.1,ENST00000354106.3	chr10	97154367:97154430:97154757:97154832:97156976:97157040,97146747:97146876:97154757:97154832:97156976:97157040,97143994:97144042:97154757:97154832:97156976:97157040,	97154758	97154832	97154764	97154764	Frame_Shift_Del	A	-	p.S431fs
LIHC	TCGA-DD-A1EG-01	TLL2	ENST00000469598.1	chr10	98205847:98205925:98240105:98240216:98273267:98273668,	98240106	98240216	98240124	98240124	Frame_Shift_Del	C	-	p.A90fs
LIHC	TCGA-DD-A1EG-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968707	99968707	Frame_Shift_Del	A	-	p.Q279fs
LIHC	TCGA-DD-A1EG-01	LOXL4	ENST00000260702.3	chr10	100019147:100019186:100020678:100020884:100021791:100021970,	100020679	100020884	100020711	100020711	Frame_Shift_Del	G	-	p.P210fs
LIHC	TCGA-DD-A1EG-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000359632.3	chr10	100185297:100185477:100185574:100185742:100186971:100187021,	100185575	100185742	100185680	100185680	Frame_Shift_Del	C	-	p.R350fs
LIHC	TCGA-DD-A1EG-01	CNNM1	ENST00000370528.3	chr10	101136811:101136975:101147576:101147760:101150062:101150164,	101147577	101147760	101147680	101147680	Frame_Shift_Del	C	-	p.A815fs
LIHC	TCGA-DD-A1EG-01	ENTPD7	ENST00000370489.4	chr10	101419618:101419721:101421202:101421385:101439017:101439223,	101421203	101421385	101421269	101421269	Frame_Shift_Del	C	-	p.L25fs
LIHC	TCGA-DD-A1EG-01	COX15	ENST00000016171.5,ENST00000370483.5	chr10	101476104:101476218:101478102:101478257:101480743:101480825,	101478103	101478257	101478142	101478142	Frame_Shift_Del	A	-	p.F316fs
LIHC	TCGA-DD-A1EG-01	DNMBP	ENST00000422692.1,ENST00000324109.4,ENST00000543621.1,ENST00000342239.3	chr10	101659675:101659823:101667751:101667851:101668709:101668903,	101667752	101667851	101667822	101667822	Frame_Shift_Del	A	-	p.F828fs
LIHC	TCGA-DD-A1EG-01	ERLIN1	ENST00000407654.3,ENST00000421367.2,ENST00000370408.2	chr10	101923760:101923852:101927104:101927163:101933964:101934038,	101927105	101927163	101927113	101927113	Frame_Shift_Del	A	-	p.F185fs
LIHC	TCGA-DD-A1EG-01	CWF19L1	ENST00000370379.1	chr10	101996606:101996726:101997778:101997988:102003454:102003529,101995423:101995521:101997778:101997988:102003454:102003529,	101997779	101997988	101997782	101997782	Frame_Shift_Del	T	-	p.L417fs
LIHC	TCGA-DD-A1EG-01	PAX2	ENST00000361791.3,ENST00000370296.2	chr10	102584404:102584506:102584658:102584741:102586765:102586852,	102584659	102584741	102584699	102584699	Frame_Shift_Del	G	-	p.P377fs
LIHC	TCGA-DD-A1EG-01	SEMA4G	ENST00000519649.1,ENST00000517724.1,ENST00000521006.1,ENST00000210633.3,ENST00000370250.4	chr10	102739604:102739749:102739878:102740101:102740334:102740450,	102739879	102740101	102739948	102739948	Frame_Shift_Del	T	-	p.F400fs
LIHC	TCGA-DD-A1EG-01	LZTS2	ENST00000370223.3,ENST00000370220.1	chr10	102762555:102762703:102763263:102763923:102765214:102765472,	102763264	102763923	102763726	102763726	Frame_Shift_Del	G	-	p.G292fs
LIHC	TCGA-DD-A1EG-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310472	103310472	Frame_Shift_Del	T	-	p.V558fs
LIHC	TCGA-DD-A1EG-01	POLL	ENST00000370162.3,ENST00000413344.1,ENST00000370172.1,ENST00000426919.1,ENST00000370169.1,ENST00000415897.1,ENST00000299206.4,ENST00000461587.1	chr10	103344634:103344676:103345072:103345235:103345618:103345913,	103345073	103345235	103345081	103345081	Frame_Shift_Del	G	-	p.Q189fs
LIHC	TCGA-DD-A1EG-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906667	103906667	Frame_Shift_Del	A	-	p.P1306fs
LIHC	TCGA-DD-A1EG-01	PPRC1	ENST00000278070.2,ENST00000370012.1,ENST00000413464.2	chr10	103908573:103908695:103908934:103909086:103909682:103909937,	103908935	103909086	103909059	103909059	Frame_Shift_Del	T	-	p.F1622fs
LIHC	TCGA-DD-A1EG-01	NFKB2	ENST00000189444.6,ENST00000428099.1,ENST00000336486.5,ENST00000467116.1,ENST00000369966.3	chr10	104157968:104158054:104158141:104158280:104158495:104158621,	104158142	104158280	104158163	104158163	Frame_Shift_Del	C	-	p.P293fs
LIHC	TCGA-DD-A1EG-01	NFKB2	ENST00000189444.6,ENST00000428099.1,ENST00000336486.5,ENST00000369966.3	chr10	104158141:104158280:104158495:104158621:104159044:104159254,	104158496	104158621	104158549	104158549	Frame_Shift_Del	C	-	p.P349fs
LIHC	TCGA-DD-A1EG-01	CYP17A1	ENST00000369887.3	chr10	104592749:104592965:104593792:104593879:104594541:104594771,	104593793	104593879	104593810	104593810	Frame_Shift_Del	T	-	p.I246fs
LIHC	TCGA-DD-A1EG-01	TAF5	ENST00000369839.3	chr10	105141477:105141598:105142994:105143124:105145082:105145247,	105142995	105143124	105143073	105143073	Frame_Shift_Del	T	-	p.I538fs
LIHC	TCGA-DD-A1EG-01	SFR1	ENST00000369727.3,ENST00000369729.3,ENST00000336358.5	chr10	105882722:105882844:105883471:105883882:105885270:105885602,	105883472	105883882	105883583	105883583	Frame_Shift_Del	T	-	p.F145fs
LIHC	TCGA-DD-A1EG-01	GSTO1	ENST00000369710.4,ENST00000369713.5	chr10	106013951:106014257:106014920:106015029:106019333:106019556,106014492:106014720:106014920:106015029:106019333:106019556,	106014921	106015029	106014949	106014949	Frame_Shift_Del	G	-	p.E21fs
LIHC	TCGA-DD-A1EG-01	ZDHHC6	ENST00000369404.3,ENST00000369405.3	chr10	114192997:114193039:114194054:114194222:114198093:114198147,	114194055	114194222	114194175	114194175	Frame_Shift_Del	A	-	p.F261fs
LIHC	TCGA-DD-A1EG-01	ZDHHC6	ENST00000369404.3,ENST00000369405.3	chr10	114198093:114198147:114200291:114200453:114201949:114202017,	114200292	114200453	114200298	114200298	Frame_Shift_Del	A	-	p.F225fs
LIHC	TCGA-DD-A1EG-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115350336:115350648:115351952:115352060:115355381:115355486,	115351953	115352060	115352030	115352030	Frame_Shift_Del	G	-	p.R1531fs
LIHC	TCGA-DD-A1EG-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115365936:115366041:115368172:115368271:115370217:115370322,	115368173	115368271	115368250	115368250	Frame_Shift_Del	G	-	p.H1217fs
LIHC	TCGA-DD-A1EG-01	TDRD1	ENST00000422662.1,ENST00000369280.1,ENST00000369282.1,ENST00000251864.2	chr10	115977303:115977414:115978172:115978343:115980326:115980602,	115978173	115978343	115978301	115978301	Frame_Shift_Del	T	-	p.F818fs
LIHC	TCGA-DD-A1EG-01	ATRNL1	ENST00000423111.2,ENST00000424738.1,ENST00000355044.3	chr10	117228681:117228839:117278772:117278834:117308967:117309037,	117278773	117278834	117278815	117278815	Frame_Shift_Del	T	-	p.F1234fs
LIHC	TCGA-DD-A1EG-01	PNLIP	ENST00000369221.2	chr10	118307871:118307994:118310609:118310744:118313238:118313350,	118310610	118310744	118310669	118310669	Frame_Shift_Del	A	-	p.R128fs
LIHC	TCGA-DD-A1EG-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120801787:120802284:120803565:120803654:120809312:120809497,	120803566	120803654	120803575	120803575	Frame_Shift_Del	G	-	p.P914fs
LIHC	TCGA-DD-A1EG-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120801787:120802284:120803565:120803654:120809312:120809497,	120803566	120803654	120803610	120803610	Frame_Shift_Del	T	-	p.K901fs
LIHC	TCGA-DD-A1EG-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120820735:120820840:120824910:120825082:120828957:120829166,	120824911	120825082	120824927	120824927	Frame_Shift_Del	C	-	p.G369fs
LIHC	TCGA-DD-A1EG-01	PRDX3	ENST00000298510.2	chr10	120933256:120933384:120933962:120934104:120936532:120936665,	120933963	120934104	120933995	120933995	Frame_Shift_Del	T	-	p.K93fs
LIHC	TCGA-DD-A1EG-01	GRK5	ENST00000369108.3,ENST00000392870.2	chr10	121199242:121199280:121201510:121201600:121203055:121203264,	121201511	121201600	121201551	121201551	Frame_Shift_Del	C	-	p.I336fs
LIHC	TCGA-DD-A1EG-01	INPP5F	ENST00000361976.2,ENST00000369083.3	chr10	121551380:121551548:121551668:121551725:121556226:121556425,	121551669	121551725	121551681	121551681	Frame_Shift_Del	T	-	p.F210fs
LIHC	TCGA-DD-A1EG-01	WDR11	ENST00000605178.1,ENST00000605202.1	chr10	122610915:122611039:122612035:122612147:122618154:122618308,	122612036	122612147	122612116	122612116	Frame_Shift_Del	T	-	p.V56fs
LIHC	TCGA-DD-A1EG-01	FGFR2	ENST00000490349.1,ENST00000604236.1	chr10	123274740:123274833:123278195:123278343:123279492:123279683,123276883:123276977:123278195:123278343:123279492:123279683,	123278196	123278343	123278272	123278272	Frame_Shift_Del	T	-	p.E337fs
LIHC	TCGA-DD-A1EG-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123659380:123659509:123661905:123662135:123670420:123670666,123658355:123658484:123661905:123662135:123670420:123670666,	123661906	123662135	123661942	123661942	Frame_Shift_Del	A	-	p.F259fs
LIHC	TCGA-DD-A1EG-01	ATE1	ENST00000423243.1,ENST00000540606.1,ENST00000224652.6,ENST00000369043.3,ENST00000455628.1,ENST00000369040.3	chr10	123662031:123662135:123670420:123670666:123681863:123681926,123662031:123662135:123670420:123670666:123673304:123673408,	123670421	123670666	123670534	123670534	Frame_Shift_Del	T	-	p.N157fs
LIHC	TCGA-DD-A1EG-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123842892	123842892	Frame_Shift_Del	G	-	p.G293fs
LIHC	TCGA-DD-A1EG-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123843760	123843760	Frame_Shift_Del	C	-	p.A582fs
LIHC	TCGA-DD-A1EG-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742364	124742364	Frame_Shift_Del	G	-	p.W111fs
LIHC	TCGA-DD-A1EG-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742446	124742446	Frame_Shift_Del	A	-	p.T138fs
LIHC	TCGA-DD-A1EG-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742491	124742491	Frame_Shift_Del	T	-	p.N153fs
LIHC	TCGA-DD-A1EG-01	ACADSB	ENST00000496730.2,ENST00000358776.4	chr10	124797262:124797363:124799981:124800188:124800724:124800895,	124799982	124800188	124800184	124800184	Frame_Shift_Del	A	-	p.E169fs
LIHC	TCGA-DD-A1EG-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805434	125805434	Frame_Shift_Del	A	-	p.S99fs
LIHC	TCGA-DD-A1EG-01	CTBP2	ENST00000411419.2,ENST00000309035.6,ENST00000494626.2,ENST00000531469.1,ENST00000334808.6,ENST00000337195.5	chr10	126682423:126682554:126683037:126683252:126686532:126686739,	126683038	126683252	126683193	126683193	Frame_Shift_Del	A	-	p.Y749fs
LIHC	TCGA-DD-A1EG-01	BCCIP	ENST00000429863.2	chr10	127516126:127516207:127519988:127520176:127522340:127522515,	127519989	127520176	127520050	127520050	Frame_Shift_Del	A	-	p.E158fs
LIHC	TCGA-DD-A1EG-01	BCCIP	ENST00000278100.6	chr10	127519988:127520176:127522340:127522515:127529823:127529899,127519988:127520176:127522340:127522515:127524672:127525122,	127522341	127522515	127522504	127522504	Frame_Shift_Del	T	-	p.F256fs
LIHC	TCGA-DD-A1EG-01	DHX32	ENST00000284690.3	chr10	127542529:127542772:127548171:127548544:127555558:127555752,	127548172	127548544	127548494	127548494	Frame_Shift_Del	A	-	p.L176fs
LIHC	TCGA-DD-A1EG-01	C10orf90	ENST00000454341.1	chr10	128147608:128147786:128149969:128150154:128192525:128192687,	128149970	128150154	128150122	128150122	Frame_Shift_Del	T	-	p.I523fs
LIHC	TCGA-DD-A1EG-01	DOCK1	ENST00000280333.6	chr10	128797617:128797699:128798435:128798571:128806995:128807068,	128798436	128798571	128798543	128798543	Frame_Shift_Del	G	-	p.S319fs
LIHC	TCGA-DD-A1EG-01	DOCK1	ENST00000280333.6	chr10	129242389:129242543:129245657:129245809:129249595:129250781,	129245658	129245809	129245680	129245680	Frame_Shift_Del	G	-	p.T1791fs
LIHC	TCGA-DD-A1EG-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913486	129913486	Frame_Shift_Del	A	-	p.S396fs
LIHC	TCGA-DD-A1EG-01	JAKMIP3	ENST00000298622.4	chr10	133978173:133978239:133980486:133980559:133981456:133982537,	133980487	133980559	133980505	133980505	Frame_Shift_Del	T	-	p.F836fs
LIHC	TCGA-DD-A1EG-01	STK32C	ENST00000368622.1,ENST00000462160.1,ENST00000298630.3,ENST00000368625.4	chr10	134037910:134038027:134038736:134038840:134039030:134039120,	134038737	134038840	134038758	134038758	Frame_Shift_Del	G	-	p.A168fs
LIHC	TCGA-DD-A1EG-01	ADAM8	ENST00000559180.1,ENST00000415217.3,ENST00000463298.1	chr10	135087662:135087739:135088987:135089091:135090275:135090354,	135088988	135089091	135089025	135089025	Frame_Shift_Del	G	-	p.P38fs
LIHC	TCGA-DD-A1EG-01	ADAM8	ENST00000559180.1,ENST00000415217.3,ENST00000463298.1	chr10	135087662:135087739:135088987:135089091:135090275:135090354,	135088988	135089091	135089068	135089068	Frame_Shift_Del	C	-	p.A24fs
LIHC	TCGA-DD-A1EG-01	TUBGCP2	ENST00000487796.2	chr10	135113488:135113617:135116295:135116484:135122326:135122352,135113488:135114051:135116295:135116484:135122326:135122352,	135116296	135116484	135116345	135116345	Frame_Shift_Del	T	-	p.K34fs
LIHC	TCGA-DD-A1EG-01	FUOM	ENST00000465384.1,ENST00000368551.1,ENST00000368552.3,ENST00000447176.1	chr10	135168657:135169009:135169241:135169315:135170143:135170242,135168794:135168940:135169241:135169315:135170143:135170242,	135169242	135169315	135169259	135169259	Frame_Shift_Del	A	-	p.F127fs
LIHC	TCGA-DD-A1EG-01	SIRT3	ENST00000529055.1,ENST00000530067.1,ENST00000532837.1	chr11	233208:233215:233342:233534:236047:236326,233208:233215:233342:233534:236193:236337,	233343	233534	233380	233380	Frame_Shift_Del	C	-	p.A146fs
LIHC	TCGA-DD-A1EG-01	SIRT3	ENST00000525237.1	chr11	233208:233215:233342:233486:236047:236326,	233343	233486	233380	233380	Frame_Shift_Del	C	-	p.A146fs
LIHC	TCGA-DD-A1EG-01	SIRT3	ENST00000526854.1	chr11	233208:233215:233342:233437:236193:236337,233208:233215:233342:233437:236047:236326,	233343	233437	233380	233380	Frame_Shift_Del	C	-	p.A146fs
LIHC	TCGA-DD-A1EG-01	PSMD13	ENST00000533717.1,ENST00000431206.2,ENST00000382671.4,ENST00000532097.1,ENST00000525665.1	chr11	250802:250865:251545:251626:251819:251894,	251546	251626	251592	251592	Frame_Shift_Del	A	-	p.E295fs
LIHC	TCGA-DD-A1EG-01	PSMD13	ENST00000532025.1,ENST00000431206.2,ENST00000382671.4,ENST00000532097.1,ENST00000525665.1	chr11	250802:250865:251819:251936:252504:252617,251545:251626:251819:251936:252504:252617,	251820	251936	251905	251905	Frame_Shift_Del	G	-	p.W335fs
LIHC	TCGA-DD-A1EG-01	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	280816	280816	Frame_Shift_Del	A	-	p.Y361fs
LIHC	TCGA-DD-A1EG-01	NLRP6	ENST00000312165.5,ENST00000534750.1	chr11	282704:282797:284229:284400:284474:284642,	284230	284400	284280	284280	Frame_Shift_Del	C	-	p.A750fs
LIHC	TCGA-DD-A1EG-01	ANO9	ENST00000532094.1,ENST00000528927.1,ENST00000332826.6	chr11	433313:433459:433814:433937:434023:434098,	433815	433937	433898	433898	Frame_Shift_Del	G	-	p.Q41fs
LIHC	TCGA-DD-A1EG-01	RASSF7	ENST00000531112.1	chr11	562384:562776:563188:563478:563557:563645,	563189	563478	563237	563237	Frame_Shift_Del	A	-	p.N291fs
LIHC	TCGA-DD-A1EG-01	RASSF7	ENST00000454668.2	chr11	562384:562776:563188:563317:563557:563645,	563189	563317	563237	563237	Frame_Shift_Del	A	-	p.N291fs
LIHC	TCGA-DD-A1EG-01	IRF7	ENST00000348655.6,ENST00000397570.1	chr11	613950:614037:614173:614399:614475:614531,613821:613865:614173:614399:614475:614531,	614174	614399	614202	614202	Frame_Shift_Del	C	-	p.G230fs
LIHC	TCGA-DD-A1EG-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618714	618714	Frame_Shift_Del	G	-	p.P615fs
LIHC	TCGA-DD-A1EG-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618853	618853	Frame_Shift_Del	C	-	p.G569fs
LIHC	TCGA-DD-A1EG-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618900	618900	Frame_Shift_Del	G	-	p.P553fs
LIHC	TCGA-DD-A1EG-01	DEAF1	ENST00000382409.3	chr11	684897:684963:686857:686997:687910:687936,	686858	686997	686988	686988	Frame_Shift_Del	C	-	p.G225fs
LIHC	TCGA-DD-A1EG-01	EPS8L2	ENST00000530636.1,ENST00000527832.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	725727:725847:726097:726170:726303:726484,	726098	726170	726143	726143	Frame_Shift_Del	C	-	p.P577fs
LIHC	TCGA-DD-A1EG-01	MUC6	ENST00000421673.2	chr11	1030212:1030335:1030572:1030780:1030946:1031056,	1030573	1030780	1030678	1030678	Frame_Shift_Del	G	-	p.Q263fs
LIHC	TCGA-DD-A1EG-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266225	1266225	Frame_Shift_Del	C	-	p.N2708fs
LIHC	TCGA-DD-A1EG-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266343	1266343	Frame_Shift_Del	C	-	p.P2749fs
LIHC	TCGA-DD-A1EG-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268355	1268355	Frame_Shift_Del	C	-	p.I3418fs
LIHC	TCGA-DD-A1EG-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269123	1269123	Frame_Shift_Del	C	-	p.C3674fs
LIHC	TCGA-DD-A1EG-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269332	1269332	Frame_Shift_Del	C	-	p.A3744fs
LIHC	TCGA-DD-A1EG-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1275923:1276110:1276270:1276496:1276612:1276788,	1276271	1276496	1276448	1276448	Frame_Shift_Del	C	-	p.T5284fs
LIHC	TCGA-DD-A1EG-01	MUC5B	ENST00000529681.1,ENST00000447027.1,ENST00000526859.1	chr11	1278855:1278940:1279328:1279433:1279559:1279597,	1279329	1279433	1279348	1279348	Frame_Shift_Del	C	-	p.C5493fs
LIHC	TCGA-DD-A1EG-01	TOLLIP	ENST00000527886.1,ENST00000263646.7,ENST00000317204.6	chr11	1309865:1310006:1311456:1311639:1330695:1330813,1309865:1310006:1311456:1311639:1316874:1316961,	1311457	1311639	1311494	1311494	Frame_Shift_Del	G	-	p.P41fs
LIHC	TCGA-DD-A1EG-01	SYT8	ENST00000424556.2,ENST00000381978.3,ENST00000341958.3,ENST00000381968.3	chr11	1857115:1857214:1857355:1857514:1857654:1857782,	1857356	1857514	1857460	1857460	Frame_Shift_Del	A	-	p.T154fs
LIHC	TCGA-DD-A1EG-01	SYT8	ENST00000424556.2,ENST00000381978.3,ENST00000341958.3,ENST00000381968.3,ENST00000535046.1	chr11	1857439:1857514:1857654:1857822:1857985:1858091,	1857655	1857822	1857804	1857804	Frame_Shift_Del	C	-	p.G222fs
LIHC	TCGA-DD-A1EG-01	LSP1	ENST00000406638.2,ENST00000421485.1,ENST00000451814.1,ENST00000432093.1,ENST00000405957.2,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1892581:1892642:1902661:1902826:1904648:1904658,1901316:1901454:1902661:1902826:1904648:1904658,	1902662	1902826	1902786	1902786	Frame_Shift_Del	C	-	p.P45fs
LIHC	TCGA-DD-A1EG-01	LSP1	ENST00000406638.2,ENST00000472974.1,ENST00000432093.1,ENST00000405957.2,ENST00000485341.1,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1902661:1902826:1904648:1904790:1905161:1905227,	1904649	1904790	1904757	1904757	Frame_Shift_Del	G	-	p.L93fs
LIHC	TCGA-DD-A1EG-01	CD81	ENST00000530648.1,ENST00000527343.1,ENST00000533417.1,ENST00000464784.2,ENST00000492252.1,ENST00000381036.3,ENST00000475945.2,ENST00000492627.1,ENST00000493525.2,ENST00000263645.5,ENST00000530239.1,ENST00000526072.1	chr11	2411675:2411756:2415324:2415422:2416201:2416243,	2415325	2415422	2415387	2415387	Frame_Shift_Del	G	-	p.G82fs
LIHC	TCGA-DD-A1EG-01	SLC22A18AS	ENST00000533594.1	chr11	2909326:2909865:2920625:2921020:2923813:2923939,	2920626	2921020	2920695	2920695	Frame_Shift_Del	A	-	p.F79fs
LIHC	TCGA-DD-A1EG-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660891	3660891	Frame_Shift_Del	A	-	p.F256fs
LIHC	TCGA-DD-A1EG-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660980	3660980	Frame_Shift_Del	G	-	p.H227fs
LIHC	TCGA-DD-A1EG-01	NUP98	ENST00000324932.7,ENST00000429801.1,ENST00000355260.3	chr11	3697738:3697850:3700783:3700938:3704429:3704577,	3700784	3700938	3700804	3700804	Frame_Shift_Del	T	-	p.M1685fs
LIHC	TCGA-DD-A1EG-01	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720389	3720389	Frame_Shift_Del	T	-	p.N1311fs
LIHC	TCGA-DD-A1EG-01	NUP98	ENST00000324932.7,ENST00000429801.1,ENST00000355260.3,ENST00000359171.4	chr11	3724001:3724122:3726429:3726586:3727674:3727765,	3726430	3726586	3726487	3726487	Frame_Shift_Del	T	-	p.I1009fs
LIHC	TCGA-DD-A1EG-01	NUP98	ENST00000324932.7,ENST00000355260.3,ENST00000359171.4	chr11	3727674:3727857:3733793:3733958:3735047:3735225,	3733794	3733958	3733882	3733882	Frame_Shift_Del	T	-	p.K886fs
LIHC	TCGA-DD-A1EG-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3740717:3740780:3741941:3742055:3744386:3744685,	3741942	3742055	3741982	3741982	Frame_Shift_Del	T	-	p.K740fs
LIHC	TCGA-DD-A1EG-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3740717:3740780:3741941:3742055:3744386:3744685,	3741942	3742055	3741996	3741996	Frame_Shift_Del	T	-	p.I736fs
LIHC	TCGA-DD-A1EG-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3744386:3744685:3746332:3746449:3752620:3752808,	3746333	3746449	3746418	3746418	Frame_Shift_Del	G	-	p.L588fs
LIHC	TCGA-DD-A1EG-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000527104.1,ENST00000397004.4,ENST00000355260.3,ENST00000397013.2,ENST00000359171.4	chr11	3756420:3756554:3765738:3765879:3774545:3774638,	3765739	3765879	3765751	3765751	Frame_Shift_Del	G	-	p.Q466fs
LIHC	TCGA-DD-A1EG-01	PGAP2	ENST00000464590.1,ENST00000489571.1	chr11	3832496:3832654:3844138:3844223:3845112:3845145,3829523:3829545:3844138:3844223:3844842:3844970,3832496:3832654:3844138:3844223:3844842:3844970,	3844139	3844223	3844192	3844192	Frame_Shift_Del	A	-	p.K6fs
LIHC	TCGA-DD-A1EG-01	STIM1	ENST00000533343.1,ENST00000527651.1,ENST00000526596.1,ENST00000533977.1,ENST00000300737.4	chr11	4103434:4103581:4104111:4104212:4104492:4104728,	4104112	4104212	4104123	4104123	Frame_Shift_Del	A	-	p.I383fs
LIHC	TCGA-DD-A1EG-01	TRIM68	ENST00000532108.1,ENST00000300747.5	chr11	4623473:4623642:4624474:4624570:4629256:4629368,4623473:4623642:4624474:4624570:4626308:4626791,	4624475	4624570	4624552	4624552	Frame_Shift_Del	G	-	p.L149fs
LIHC	TCGA-DD-A1EG-01	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687262	5687262	Frame_Shift_Del	T	-	p.R274fs
LIHC	TCGA-DD-A1EG-01	FAM160A2	ENST00000265978.4	chr11	6239034:6239380:6239787:6239993:6240200:6240280,	6239788	6239993	6239862	6239862	Frame_Shift_Del	G	-	p.P469fs
LIHC	TCGA-DD-A1EG-01	FAM160A2	ENST00000524416.1,ENST00000449352.2	chr11	6239034:6239380:6239829:6239993:6240200:6240280,	6239830	6239993	6239862	6239862	Frame_Shift_Del	G	-	p.P469fs
LIHC	TCGA-DD-A1EG-01	FAM160A2	ENST00000265978.4,ENST00000524416.1,ENST00000449352.2	chr11	6244309:6244468:6244839:6245478:6245608:6245937,	6244840	6245478	6244946	6244946	Frame_Shift_Del	C	-	p.G224fs
LIHC	TCGA-DD-A1EG-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6413286	6413286	Frame_Shift_Del	C	-	p.P332fs
LIHC	TCGA-DD-A1EG-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6423311:6423439:6423805:6423955:6424374:6424438,	6423806	6423955	6423827	6423827	Frame_Shift_Del	G	-	p.P411fs
LIHC	TCGA-DD-A1EG-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6423311:6423439:6423805:6423955:6424374:6424438,	6423806	6423955	6423843	6423843	Frame_Shift_Del	T	-	p.N407fs
LIHC	TCGA-DD-A1EG-01	APBB1	ENST00000311051.3	chr11	6424876:6425052:6431856:6432591:6440214:6440300,6424876:6425052:6431856:6432591:6440575:6440644,	6431857	6432591	6431980	6431980	Frame_Shift_Del	G	-	p.R200fs
LIHC	TCGA-DD-A1EG-01	HPX	ENST00000265983.3	chr11	6458854:6458882:6459585:6459739:6461394:6461516,	6459586	6459739	6459708	6459708	Frame_Shift_Del	T	-	p.K124fs
LIHC	TCGA-DD-A1EG-01	HPX	ENST00000525057.1	chr11	6458854:6458882:6459581:6459739:6461394:6461516,	6459582	6459739	6459708	6459708	Frame_Shift_Del	T	-	p.K124fs
LIHC	TCGA-DD-A1EG-01	DNHD1	ENST00000524401.2,ENST00000254579.6,ENST00000527990.2	chr11	6579714:6579923:6580131:6580336:6580410:6580513,	6580132	6580336	6580179	6580179	Frame_Shift_Del	A	-	p.K3087fs
LIHC	TCGA-DD-A1EG-01	DNHD1	ENST00000254579.6,ENST00000527990.2	chr11	6586924:6587221:6587470:6587623:6587816:6587995,	6587471	6587623	6587557	6587557	Frame_Shift_Del	C	-	p.P3714fs
LIHC	TCGA-DD-A1EG-01	DNHD1	ENST00000525883.1	chr11	6586924:6587221:6587330:6587623:6587816:6587995,	6587331	6587623	6587557	6587557	Frame_Shift_Del	C	-	p.P3714fs
LIHC	TCGA-DD-A1EG-01	DNHD1	ENST00000254579.6,ENST00000530197.1,ENST00000529821.1,ENST00000533635.1,ENST00000527990.2	chr11	6591476:6591626:6591847:6592653:6592865:6593044,	6591848	6592653	6591916	6591916	Frame_Shift_Del	C	-	p.P4392fs
LIHC	TCGA-DD-A1EG-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
LIHC	TCGA-DD-A1EG-01	TPP1	ENST00000528571.1	chr11	6640006:6640146:6640426:6640498:6640614:6640652,6638978:6639007:6640426:6640498:6640614:6640652,	6640427	6640498	6640441	6640441	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-DD-A1EG-01	TPP1	ENST00000528917.1	chr11	6638978:6639007:6640006:6640498:6640614:6640652,	6640007	6640498	6640441	6640441	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-DD-A1EG-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000530582.1,ENST00000534409.1,ENST00000532381.1,ENST00000533792.1,ENST00000530081.1	chr11	7655725:7655783:7656782:7656824:7660962:7661042,	7656783	7656824	7656819	7656819	Frame_Shift_Del	C	-	p.P411fs
LIHC	TCGA-DD-A1EG-01	CYB5R2	ENST00000299497.9,ENST00000524790.1	chr11	7686512:7686777:7687681:7687781:7688958:7688991,7687114:7687170:7687681:7687781:7688958:7688991,	7687682	7687781	7687742	7687742	Frame_Shift_Del	T	-	p.I200fs
LIHC	TCGA-DD-A1EG-01	EIF3F	ENST00000528763.1,ENST00000449102.2,ENST00000537635.1,ENST00000531329.1,ENST00000309828.4,ENST00000533626.1	chr11	8016560:8016665:8016800:8016914:8017491:8017565,	8016801	8016914	8016830	8016830	Frame_Shift_Del	G	-	p.V304fs
LIHC	TCGA-DD-A1EG-01	RPL27A	ENST00000532359.1	chr11	8705552:8705628:8706369:8706439:8707224:8707286,	8706370	8706439	8706407	8706407	Frame_Shift_Del	G	-	p.G96fs
LIHC	TCGA-DD-A1EG-01	RPL27A	ENST00000526562.1	chr11	8705552:8705628:8706232:8706439:8707224:8707286,	8706233	8706439	8706407	8706407	Frame_Shift_Del	G	-	p.G96fs
LIHC	TCGA-DD-A1EG-01	RPL27A	ENST00000534599.1,ENST00000524496.1,ENST00000530022.1,ENST00000314138.6	chr11	8705552:8705628:8706264:8706439:8707224:8707286,	8706265	8706439	8706407	8706407	Frame_Shift_Del	G	-	p.G96fs
LIHC	TCGA-DD-A1EG-01	ST5	ENST00000532871.1	chr11	8720479:8720521:8720759:8720937:8724118:8724204,8720479:8720521:8720759:8720937:8728631:8728772,	8720760	8720937	8720820	8720820	Frame_Shift_Del	G	-	p.P946fs
LIHC	TCGA-DD-A1EG-01	ST5	ENST00000526099.1,ENST00000534127.1,ENST00000526757.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1,ENST00000533020.1	chr11	8732672:8732778:8734097:8734282:8735544:8735589,	8734098	8734282	8734170	8734170	Frame_Shift_Del	A	-	p.F700fs
LIHC	TCGA-DD-A1EG-01	ST5	ENST00000526099.1,ENST00000534127.1,ENST00000526757.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1,ENST00000533020.1	chr11	8732672:8732778:8734097:8734282:8735544:8735589,	8734098	8734282	8734179	8734179	Frame_Shift_Del	A	-	p.F697fs
LIHC	TCGA-DD-A1EG-01	ST5	ENST00000532734.1,ENST00000526099.1,ENST00000530593.1,ENST00000534127.1,ENST00000526757.1,ENST00000528527.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1,ENST00000533020.1	chr11	8736156:8736253:8737149:8737365:8739287:8739383,	8737150	8737365	8737167	8737167	Frame_Shift_Del	C	-	p.A610fs
LIHC	TCGA-DD-A1EG-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752564	8752564	Frame_Shift_Del	G	-	p.T91fs
LIHC	TCGA-DD-A1EG-01	AKIP1	ENST00000534506.1	chr11	8932745:8932770:8932990:8933218:8933999:8934080,8932745:8932770:8932990:8933218:8936372:8936477,	8932991	8933218	8933100	8933100	Frame_Shift_Del	G	-	p.R35fs
LIHC	TCGA-DD-A1EG-01	TMEM41B	ENST00000524543.1,ENST00000299596.4,ENST00000533867.1,ENST00000528080.1	chr11	9305093:9305140:9308001:9308140:9309248:9309353,	9308002	9308140	9308040	9308040	Frame_Shift_Del	T	-	p.N223fs
LIHC	TCGA-DD-A1EG-01	TMEM41B	ENST00000524543.1,ENST00000299596.4,ENST00000533867.1,ENST00000528080.1	chr11	9305093:9305140:9308001:9308140:9309248:9309353,	9308002	9308140	9308092	9308092	Frame_Shift_Del	T	-	p.I206fs
LIHC	TCGA-DD-A1EG-01	TMEM41B	ENST00000524543.1,ENST00000533723.1,ENST00000527813.1,ENST00000528080.1	chr11	9316805:9316934:9321130:9321248:9335867:9336114,	9321131	9321248	9321145	9321145	Frame_Shift_Del	A	-	p.F75fs
LIHC	TCGA-DD-A1EG-01	TMEM41B	ENST00000524543.1,ENST00000533723.1,ENST00000527813.1,ENST00000528080.1	chr11	9316805:9316934:9321130:9321248:9335867:9336114,	9321131	9321248	9321219	9321219	Frame_Shift_Del	T	-	p.R51fs
LIHC	TCGA-DD-A1EG-01	SBF2	ENST00000420722.2,ENST00000533770.1,ENST00000256190.8	chr11	9985319:9985429:9989887:9990092:10011043:10011142,	9989888	9990092	9989920	9989920	Frame_Shift_Del	T	-	p.K524fs
LIHC	TCGA-DD-A1EG-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500180	10500180	Frame_Shift_Del	C	-	p.T119fs
LIHC	TCGA-DD-A1EG-01	EIF4G2	ENST00000534272.1	chr11	10820759:10820971:10821098:10821303:10821636:10821895,10820759:10820971:10821098:10821303:10821790:10821842,	10821099	10821303	10821178	10821178	Frame_Shift_Del	T	-	p.T749fs
LIHC	TCGA-DD-A1EG-01	GALNT18	ENST00000227756.4	chr11	11400627:11400811:11454167:11454334:11470290:11470483,	11454168	11454334	11454215	11454215	Frame_Shift_Del	G	-	p.P183fs
LIHC	TCGA-DD-A1EG-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12904547:12904672:12923486:12923660:12946458:12946599,	12923487	12923660	12923651	12923651	Frame_Shift_Del	A	-	p.V273fs
LIHC	TCGA-DD-A1EG-01	ARNTL	ENST00000529388.1,ENST00000396441.3,ENST00000530357.1,ENST00000389708.3,ENST00000401424.1,ENST00000361003.4,ENST00000403510.3,ENST00000403290.1,ENST00000389707.4,ENST00000403482.3	chr11	13378601:13378643:13379980:13380138:13381891:13381919,	13379981	13380138	13380018	13380018	Frame_Shift_Del	A	-	p.K87fs
LIHC	TCGA-DD-A1EG-01	BTBD10	ENST00000528120.1,ENST00000527102.2,ENST00000530907.1,ENST00000278174.5	chr11	13410248:13410688:13424714:13424825:13427205:13427403,	13424715	13424825	13424744	13424744	Frame_Shift_Del	C	-	p.G363fs
LIHC	TCGA-DD-A1EG-01	FAR1	ENST00000354817.3,ENST00000532701.1	chr11	13729446:13729626:13732239:13732417:13733310:13733355,	13732240	13732417	13732354	13732354	Frame_Shift_Del	A	-	p.A220fs
LIHC	TCGA-DD-A1EG-01	PDE3B	ENST00000282096.4	chr11	14793482:14793533:14807982:14808231:14810651:14810788,	14807983	14808231	14808211	14808211	Frame_Shift_Del	G	-	p.G420fs
LIHC	TCGA-DD-A1EG-01	SOX6	ENST00000316399.6,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16036487:16036596:16068059:16068247:16071258:16071484,16036487:16036596:16068059:16068247:16071300:16071484,	16068060	16068247	16068176	16068176	Frame_Shift_Del	C	-	p.A503fs
LIHC	TCGA-DD-A1EG-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16119154:16119234:16133348:16133469:16205431:16205500,	16133349	16133469	16133431	16133431	Frame_Shift_Del	A	-	p.F272fs
LIHC	TCGA-DD-A1EG-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16208328:16208501:16256127:16256217:16339991:16340199,	16256128	16256217	16256170	16256170	Frame_Shift_Del	T	-	p.M165fs
LIHC	TCGA-DD-A1EG-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17144248:17144360:17150846:17151014:17153462:17153585,	17150847	17151014	17150951	17150951	Frame_Shift_Del	A	-	p.F765fs
LIHC	TCGA-DD-A1EG-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17156657:17156706:17158028:17158172:17167214:17167278,	17158029	17158172	17158127	17158127	Frame_Shift_Del	T	-	p.I584fs
LIHC	TCGA-DD-A1EG-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190890	17190890	Frame_Shift_Del	A	-	p.F133fs
LIHC	TCGA-DD-A1EG-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17191033	17191033	Frame_Shift_Del	T	-	p.R86fs
LIHC	TCGA-DD-A1EG-01	ABCC8	ENST00000389817.3,ENST00000302539.4,ENST00000527905.1	chr11	17448595:17448701:17449413:17449489:17449835:17449952,	17449414	17449489	17449417	17449417	Frame_Shift_Del	G	-	p.R705fs
LIHC	TCGA-DD-A1EG-01	SERGEF	ENST00000533328.1	chr11	18017342:18017456:18022043:18022104:18025987:18026044,18017342:18017456:18022043:18022104:18028137:18028293,	18022044	18022104	18022083	18022083	Frame_Shift_Del	A	-	p.C157fs
LIHC	TCGA-DD-A1EG-01	SAAL1	ENST00000531751.1	chr11	18105081:18105278:18108412:18108601:18108689:18108753,18102957:18103050:18108412:18108601:18108689:18108753,	18108413	18108601	18108473	18108473	Frame_Shift_Del	A	-	p.S328fs
LIHC	TCGA-DD-A1EG-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000396253.3	chr11	18301164:18301489:18303496:18303767:18305341:18305448,	18303497	18303767	18303594	18303594	Frame_Shift_Del	C	-	p.A964fs
LIHC	TCGA-DD-A1EG-01	HPS5	ENST00000352460.3	chr11	18309439:18309560:18312988:18313566:18314445:18314523,18309439:18309560:18312988:18313566:18316566:18316716,	18312989	18313566	18313266	18313266	Frame_Shift_Del	A	-	p.F607fs
LIHC	TCGA-DD-A1EG-01	HPS5	ENST00000352460.3	chr11	18309439:18309560:18312988:18313566:18314445:18314523,18309439:18309560:18312988:18313566:18316566:18316716,	18312989	18313566	18313425	18313425	Frame_Shift_Del	T	-	p.K554fs
LIHC	TCGA-DD-A1EG-01	HPS5	ENST00000438420.2,ENST00000349215.3,ENST00000531848.1,ENST00000396253.3	chr11	18326968:18327040:18327681:18327894:18330492:18330626,	18327682	18327894	18327878	18327878	Frame_Shift_Del	T	-	p.I96fs
LIHC	TCGA-DD-A1EG-01	GTF2H1	ENST00000265963.4,ENST00000453096.2,ENST00000418116.2,ENST00000543932.1	chr11	18354606:18354775:18357300:18357493:18359655:18359821,	18357301	18357493	18357450	18357450	Frame_Shift_Del	A	-	p.K102fs
LIHC	TCGA-DD-A1EG-01	ZDHHC13	ENST00000399351.3,ENST00000446113.2,ENST00000525490.1	chr11	19174105:19174231:19177342:19177476:19180486:19180587,	19177343	19177476	19177426	19177426	Frame_Shift_Del	A	-	p.L319fs
LIHC	TCGA-DD-A1EG-01	ZDHHC13	ENST00000399351.3,ENST00000446113.2,ENST00000525490.1	chr11	19174105:19174231:19177342:19177476:19180486:19180587,	19177343	19177476	19177451	19177451	Frame_Shift_Del	T	-	p.F329fs
LIHC	TCGA-DD-A1EG-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256530	19256530	Frame_Shift_Del	T	-	p.N176fs
LIHC	TCGA-DD-A1EG-01	NAV2	ENST00000540292.1,ENST00000527559.2,ENST00000396087.3	chr11	20077314:20077503:20078075:20078174:20083852:20083905,	20078076	20078174	20078087	20078087	Frame_Shift_Del	A	-	p.K1569fs
LIHC	TCGA-DD-A1EG-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20112410:20112564:20113751:20113914:20114644:20114745,	20113752	20113914	20113852	20113852	Frame_Shift_Del	C	-	p.S1921fs
LIHC	TCGA-DD-A1EG-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20119122:20119291:20122482:20122718:20124800:20124955,	20122483	20122718	20122611	20122611	Frame_Shift_Del	A	-	p.K2107fs
LIHC	TCGA-DD-A1EG-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5,ENST00000532434.1	chr11	21135134:21135260:21250877:21251000:21392398:21392494,	21250878	21251000	21250978	21250978	Frame_Shift_Del	G	-	p.V537fs
LIHC	TCGA-DD-A1EG-01	SLC5A12	ENST00000280467.6,ENST00000527405.1,ENST00000533617.1,ENST00000396005.3	chr11	26718734:26718799:26719952:26720082:26725077:26725218,	26719953	26720082	26719998	26719998	Frame_Shift_Del	T	-	p.K302fs
LIHC	TCGA-DD-A1EG-01	BBOX1	ENST00000529202.1,ENST00000263182.3,ENST00000528583.1,ENST00000525090.1	chr11	27078747:27078862:27114714:27114913:27136998:27137104,	27114715	27114913	27114727	27114727	Frame_Shift_Del	G	-	p.W116fs
LIHC	TCGA-DD-A1EG-01	CCDC34	ENST00000328697.6	chr11	27362938:27363097:27371878:27371986:27378949:27379088,	27371879	27371986	27371889	27371889	Frame_Shift_Del	T	-	p.K199fs
LIHC	TCGA-DD-A1EG-01	CCDC34	ENST00000328697.6,ENST00000317945.6	chr11	27371878:27371986:27378949:27379088:27384382:27384781,	27378950	27379088	27378986	27378986	Frame_Shift_Del	T	-	p.K154fs
LIHC	TCGA-DD-A1EG-01	KIF18A	ENST00000263181.6	chr11	28083941:28084063:28090805:28090970:28098553:28098716,	28090806	28090970	28090819	28090819	Frame_Shift_Del	C	-	p.G526fs
LIHC	TCGA-DD-A1EG-01	KIF18A	ENST00000533466.1,ENST00000263181.6	chr11	28110070:28110268:28112163:28112274:28112955:28113060,	28112164	28112274	28112231	28112231	Frame_Shift_Del	T	-	p.N211fs
LIHC	TCGA-DD-A1EG-01	METTL15	ENST00000407364.3,ENST00000342303.5,ENST00000303459.6,ENST00000451385.2	chr11	28232608:28232745:28311752:28311944:28318343:28318478,28232608:28232745:28311752:28311944:28318299:28318478,	28311753	28311944	28311894	28311894	Frame_Shift_Del	T	-	p.G183fs
LIHC	TCGA-DD-A1EG-01	DCDC1	ENST00000597505.1,ENST00000452803.1	chr11	31287053:31287147:31312193:31312399:31327161:31327324,	31312194	31312399	31312239	31312239	Frame_Shift_Del	C	-	p.G305fs
LIHC	TCGA-DD-A1EG-01	IMMP1L	ENST00000531693.1	chr11	31482172:31482261:31484718:31484852:31495270:31495333,31482172:31482261:31484718:31484852:31531065:31531110,31455006:31455117:31484718:31484852:31531065:31531110,31477859:31477933:31484718:31484852:31491304:31491344,	31484719	31484852	31484799	31484799	Frame_Shift_Del	T	-	p.T9fs
LIHC	TCGA-DD-A1EG-01	EIF3M	ENST00000526267.1,ENST00000323213.5,ENST00000531120.1,ENST00000525054.1,ENST00000524896.1	chr11	32615411:32615495:32616459:32616559:32617511:32617556,	32616460	32616559	32616533	32616533	Frame_Shift_Del	T	-	p.F231fs
LIHC	TCGA-DD-A1EG-01	EIF3M	ENST00000531120.1,ENST00000525054.1,ENST00000524896.1	chr11	32622234:32622378:32623307:32623368:32623824:32623848,	32623308	32623368	32623334	32623334	Frame_Shift_Del	A	-	p.K324fs
LIHC	TCGA-DD-A1EG-01	EIF3M	ENST00000531120.1,ENST00000525054.1,ENST00000524896.1	chr11	32622234:32622378:32623307:32623368:32623824:32623848,	32623308	32623368	32623354	32623354	Frame_Shift_Del	A	-	p.R330fs
LIHC	TCGA-DD-A1EG-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635143	32635143	Frame_Shift_Del	G	-	p.P907fs
LIHC	TCGA-DD-A1EG-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635393	32635393	Frame_Shift_Del	T	-	p.N824fs
LIHC	TCGA-DD-A1EG-01	DEPDC7	ENST00000311388.3,ENST00000241051.3	chr11	33047204:33047595:33049231:33049359:33050148:33050338,	33049232	33049359	33049321	33049321	Frame_Shift_Del	C	-	p.S176fs
LIHC	TCGA-DD-A1EG-01	TCP11L1	ENST00000528107.1,ENST00000531632.2,ENST00000432887.1,ENST00000527661.1,ENST00000334274.4,ENST00000324357.9	chr11	33083075:33083272:33087375:33087557:33090232:33090405,	33087376	33087557	33087485	33087485	Frame_Shift_Del	T	-	p.I361fs
LIHC	TCGA-DD-A1EG-01	TCP11L1	ENST00000528107.1,ENST00000531632.2,ENST00000432887.1,ENST00000527661.1,ENST00000334274.4,ENST00000324357.9	chr11	33087375:33087557:33090232:33090405:33094019:33094199,	33090233	33090405	33090312	33090312	Frame_Shift_Del	G	-	p.G412fs
LIHC	TCGA-DD-A1EG-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308323	33308323	Frame_Shift_Del	C	-	p.G121fs
LIHC	TCGA-DD-A1EG-01	CAPRIN1	ENST00000389645.3	chr11	34073297:34073418:34073967:34074183:34093272:34093335,	34073968	34074183	34074178	34074178	Frame_Shift_Del	A	-	p.K72fs
LIHC	TCGA-DD-A1EG-01	PDHX	ENST00000430469.2,ENST00000227868.4	chr11	34938187:34938362:34952950:34953031:34969052:34969150,	34952951	34953031	34953022	34953022	Frame_Shift_Del	A	-	p.K64fs
LIHC	TCGA-DD-A1EG-01	CD44	ENST00000433354.2,ENST00000428726.2,ENST00000525685.1,ENST00000449691.2,ENST00000437706.2	chr11	35211561:35211612:35218292:35218421:35219667:35219793,	35218293	35218421	35218370	35218370	Frame_Shift_Del	T	-	p.F249fs
LIHC	TCGA-DD-A1EG-01	CD44	ENST00000434472.2	chr11	35223167:35223334:35232792:35232996:35236398:35236408,35211381:35211519:35232792:35232996:35236398:35236408,35231516:35231601:35232792:35232996:35236398:35236408,35229651:35229756:35232792:35232996:35236398:35236461,35211561:35211612:35232792:35232996:35236398:35236408,	35232793	35232996	35232892	35232892	Frame_Shift_Del	A	-	p.E569fs
LIHC	TCGA-DD-A1EG-01	SLC1A2	ENST00000606205.1,ENST00000395753.1,ENST00000278379.3,ENST00000531628.1,ENST00000395750.1	chr11	35308303:35308498:35313833:35314067:35323065:35323075,	35313834	35314067	35313881	35313881	Frame_Shift_Del	A	-	p.F348fs
LIHC	TCGA-DD-A1EG-01	LDLRAD3	ENST00000315571.5	chr11	36057652:36057799:36103202:36103328:36119876:36120011,	36103203	36103328	36103286	36103286	Frame_Shift_Del	G	-	p.G93fs
LIHC	TCGA-DD-A1EG-01	API5	ENST00000526394.1,ENST00000420461.2,ENST00000378852.3,ENST00000534600.1,ENST00000531273.1,ENST00000455725.2	chr11	43351535:43351608:43352057:43352114:43356827:43356904,	43352058	43352114	43352104	43352104	Frame_Shift_Del	T	-	p.V423fs
LIHC	TCGA-DD-A1EG-01	ACCS	ENST00000527346.1	chr11	44097080:44097142:44098872:44101170:44102569:44102615,	44098873	44101170	44101167	44101167	Frame_Shift_Del	A	-	p.E307fs
LIHC	TCGA-DD-A1EG-01	EXT2	ENST00000358681.4,ENST00000343631.3,ENST00000533608.1,ENST00000395673.3	chr11	44135734:44135851:44146338:44146534:44148365:44148505,	44146339	44146534	44146463	44146463	Frame_Shift_Del	T	-	p.S323fs
LIHC	TCGA-DD-A1EG-01	EXT2	ENST00000358681.4,ENST00000343631.3,ENST00000533608.1,ENST00000395673.3	chr11	44253902:44254046:44255664:44255793:44257842:44257925,	44255665	44255793	44255667	44255667	Frame_Shift_Del	T	-	p.Y636fs
LIHC	TCGA-DD-A1EG-01	CD82	ENST00000227155.4,ENST00000342935.3,ENST00000530931.1,ENST00000525898.1	chr11	44636821:44636923:44639711:44639915:44640189:44640273,	44639712	44639915	44639789	44639789	Frame_Shift_Del	C	-	p.Y172fs
LIHC	TCGA-DD-A1EG-01	CRY2	ENST00000443527.2,ENST00000417225.2,ENST00000533779.1	chr11	45880281:45880424:45882398:45882583:45883610:45883666,	45882399	45882583	45882475	45882475	Frame_Shift_Del	C	-	p.P203fs
LIHC	TCGA-DD-A1EG-01	MAPK8IP1	ENST00000241014.2,ENST00000395629.2	chr11	45921688:45922003:45923530:45923612:45923922:45924294,	45923531	45923612	45923558	45923558	Frame_Shift_Del	A	-	p.K175fs
LIHC	TCGA-DD-A1EG-01	MAPK8IP1	ENST00000241014.2,ENST00000395629.2	chr11	45925539:45925712:45926005:45926115:45926268:45926385,	45926006	45926115	45926014	45926014	Frame_Shift_Del	A	-	p.K549fs
LIHC	TCGA-DD-A1EG-01	DGKZ	ENST00000456247.2,ENST00000524984.1,ENST00000343674.6,ENST00000454345.1	chr11	46388864:46388949:46389201:46389297:46389551:46389557,46388864:46388949:46389201:46389297:46389554:46389629,	46389202	46389297	46389256	46389256	Frame_Shift_Del	T	-	p.F298fs
LIHC	TCGA-DD-A1EG-01	DGKZ	ENST00000532868.2	chr11	46388864:46388949:46389204:46389297:46389551:46389557,	46389205	46389297	46389256	46389256	Frame_Shift_Del	T	-	p.F298fs
LIHC	TCGA-DD-A1EG-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000524984.1,ENST00000531879.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000528173.1,ENST00000527911.1	chr11	46394510:46394651:46395706:46395785:46395948:46396004,	46395707	46395785	46395710	46395710	Frame_Shift_Del	C	-	p.P632fs
LIHC	TCGA-DD-A1EG-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000524984.1,ENST00000531879.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000528173.1,ENST00000527911.1	chr11	46396157:46396216:46396315:46396389:46396483:46396595,	46396316	46396389	46396358	46396358	Frame_Shift_Del	C	-	p.P711fs
LIHC	TCGA-DD-A1EG-01	MDK	ENST00000489525.1	chr11	46403843:46404011:46404136:46404743:46405018:46405120,	46404137	46404743	46404252	46404252	Frame_Shift_Del	C	-	p.I120fs
LIHC	TCGA-DD-A1EG-01	MDK	ENST00000395569.4	chr11	46403843:46404011:46404136:46404298:46405018:46405120,46403606:46403683:46404136:46404298:46405018:46405120,	46404137	46404298	46404252	46404252	Frame_Shift_Del	C	-	p.I120fs
LIHC	TCGA-DD-A1EG-01	MDK	ENST00000489525.1	chr11	46403843:46404011:46404136:46404743:46405018:46405120,	46404137	46404743	46404272	46404272	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-DD-A1EG-01	MDK	ENST00000395569.4	chr11	46403843:46404011:46404136:46404298:46405018:46405120,46403606:46403683:46404136:46404298:46405018:46405120,	46404137	46404298	46404272	46404272	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-DD-A1EG-01	AMBRA1	ENST00000526545.1	chr11	46418999:46419493:46430062:46430256:46431825:46431918,46418999:46419493:46430062:46430256:46439462:46439545,	46430063	46430256	46430199	46430199	Frame_Shift_Del	C	-	p.G1089fs
LIHC	TCGA-DD-A1EG-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46455023:46455178:46456398:46456587:46465037:46465148,	46456399	46456587	46456435	46456435	Frame_Shift_Del	G	-	p.H929fs
LIHC	TCGA-DD-A1EG-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46567250:46567326:46568662:46568846:46569366:46569425,	46568663	46568846	46568686	46568686	Frame_Shift_Del	C	-	p.E119fs
LIHC	TCGA-DD-A1EG-01	CKAP5	ENST00000533413.1,ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46765566:46765815:46765975:46766127:46771823:46771983,	46765976	46766127	46766087	46766087	Frame_Shift_Del	G	-	p.P1915fs
LIHC	TCGA-DD-A1EG-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46804823:46804918:46806037:46806223:46810230:46810323,	46806038	46806223	46806092	46806092	Frame_Shift_Del	T	-	p.K700fs
LIHC	TCGA-DD-A1EG-01	C11orf49	ENST00000534581.1,ENST00000527784.1,ENST00000525895.1,ENST00000395460.2,ENST00000543718.1,ENST00000536126.1,ENST00000378618.2,ENST00000528488.1,ENST00000278460.7,ENST00000534249.1,ENST00000378615.3	chr11	47178573:47178769:47179363:47179473:47182677:47182741,	47179364	47179473	47179386	47179386	Frame_Shift_Del	A	-	p.K224fs
LIHC	TCGA-DD-A1EG-01	DDB2	ENST00000378601.3,ENST00000256996.4	chr11	47237886:47238023:47238408:47238600:47254364:47254510,	47238409	47238600	47238541	47238541	Frame_Shift_Del	G	-	p.G134fs
LIHC	TCGA-DD-A1EG-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282864	47282864	Frame_Shift_Del	C	-	p.S191fs
LIHC	TCGA-DD-A1EG-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47314093:47314147:47315433:47315534:47317046:47317118,47312160:47312367:47315433:47315534:47317046:47317118,	47315434	47315534	47315481	47315481	Frame_Shift_Del	A	-	p.K1118fs
LIHC	TCGA-DD-A1EG-01	FNBP4	ENST00000263773.5	chr11	47738778:47739064:47741480:47741638:47744527:47744868,	47741481	47741638	47741598	47741598	Frame_Shift_Del	T	-	p.K949fs
LIHC	TCGA-DD-A1EG-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1,ENST00000528501.1	chr11	47837497:47837581:47839607:47839676:47840925:47841010,	47839608	47839676	47839653	47839653	Frame_Shift_Del	A	-	p.F462fs
LIHC	TCGA-DD-A1EG-01	TNKS1BP1	ENST00000528882.1	chr11	57085291:57085361:57087538:57088186:57089265:57089424,	57087539	57088186	57087609	57087609	Frame_Shift_Del	C	-	p.G224fs
LIHC	TCGA-DD-A1EG-01	TNKS1BP1	ENST00000532437.1,ENST00000358252.3	chr11	57085291:57085361:57087552:57088186:57089265:57089424,	57087553	57088186	57087609	57087609	Frame_Shift_Del	C	-	p.G224fs
LIHC	TCGA-DD-A1EG-01	TNKS1BP1	ENST00000528882.1	chr11	57085291:57085361:57087538:57088186:57089265:57089424,	57087539	57088186	57088152	57088152	Frame_Shift_Del	T	-	p.K43fs
LIHC	TCGA-DD-A1EG-01	TNKS1BP1	ENST00000532437.1,ENST00000358252.3	chr11	57085291:57085361:57087552:57088186:57089265:57089424,	57087553	57088186	57088152	57088152	Frame_Shift_Del	T	-	p.K43fs
LIHC	TCGA-DD-A1EG-01	SLC43A3	ENST00000395123.2,ENST00000529554.1,ENST00000352187.1,ENST00000395124.1,ENST00000533524.1	chr11	57176647:57176771:57177407:57177594:57182087:57182204,	57177408	57177594	57177497	57177497	Frame_Shift_Del	G	-	p.P386fs
LIHC	TCGA-DD-A1EG-01	SLC43A3	ENST00000533235.1,ENST00000529494.1,ENST00000395123.2,ENST00000529112.1,ENST00000529554.1,ENST00000528098.1,ENST00000352187.1,ENST00000525474.1,ENST00000530232.1,ENST00000530005.1,ENST00000533245.1,ENST00000395124.1	chr11	57191454:57191501:57193013:57193143:57193461:57193825,	57193014	57193143	57193030	57193030	Frame_Shift_Del	C	-	p.A100fs
LIHC	TCGA-DD-A1EG-01	SLC43A3	ENST00000528187.1,ENST00000533524.1	chr11	57191454:57191501:57193013:57193182:57193461:57193825,	57193014	57193182	57193030	57193030	Frame_Shift_Del	C	-	p.A100fs
LIHC	TCGA-DD-A1EG-01	SLC43A1	ENST00000528450.1,ENST00000278426.3	chr11	57252008:57252715:57254567:57254691:57256388:57256462,	57254568	57254691	57254648	57254648	Frame_Shift_Del	G	-	p.L485fs
LIHC	TCGA-DD-A1EG-01	SLC43A1	ENST00000530159.1	chr11	57259275:57259335:57261465:57261644:57263503:57263637,57259275:57259335:57261465:57261644:57268251:57268328,	57261466	57261644	57261616	57261616	Frame_Shift_Del	G	-	p.L241fs
LIHC	TCGA-DD-A1EG-01	TIMM10	ENST00000525158.1	chr11	57296113:57296391:57297591:57297766:57298130:57298207,	57297592	57297766	57297629	57297629	Frame_Shift_Del	C	-	p.E12fs
LIHC	TCGA-DD-A1EG-01	YPEL4	ENST00000534810.1,ENST00000529776.1	chr11	57414223:57414267:57414439:57414675:57417157:57417248,	57414440	57414675	57414563	57414563	Frame_Shift_Del	G	-	p.P6fs
LIHC	TCGA-DD-A1EG-01	YPEL4	ENST00000532314.1	chr11	57414223:57414267:57414439:57414764:57417157:57417248,57413822:57413878:57414439:57414764:57417157:57417248,	57414440	57414764	57414563	57414563	Frame_Shift_Del	G	-	p.P6fs
LIHC	TCGA-DD-A1EG-01	ZDHHC5	ENST00000529480.1	chr11	57455979:57456137:57457502:57457909:57460082:57460142,	57457503	57457909	57457562	57457562	Frame_Shift_Del	T	-	p.Y148fs
LIHC	TCGA-DD-A1EG-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1	chr11	57464232:57464345:57466030:57466890:57467337:57467835,	57466031	57466890	57466087	57466087	Frame_Shift_Del	C	-	p.H393fs
LIHC	TCGA-DD-A1EG-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1	chr11	57464232:57464345:57466030:57466890:57467337:57467835,	57466031	57466890	57466142	57466142	Frame_Shift_Del	T	-	p.F412fs
LIHC	TCGA-DD-A1EG-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1	chr11	57464232:57464345:57466030:57466890:57467337:57467835,	57466031	57466890	57466206	57466206	Frame_Shift_Del	C	-	p.A433fs
LIHC	TCGA-DD-A1EG-01	CTNND1	ENST00000532787.1,ENST00000361332.4,ENST00000399050.4,ENST00000533667.1,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000527467.1,ENST00000360682.6,ENST00000415361.2,ENST00000526357.1,ENST00000532844.1,ENST00000531014.1	chr11	57582865:57582972:57583386:57583473:57583768:57584189,	57583387	57583473	57583446	57583446	Frame_Shift_Del	G	-	p.E956fs
LIHC	TCGA-DD-A1EG-01	LPXN	ENST00000530561.1,ENST00000528954.1,ENST00000528489.1,ENST00000395074.2	chr11	58294511:58295196:58295515:58295664:58317258:58317336,	58295516	58295664	58295622	58295622	Frame_Shift_Del	A	-	p.F267fs
LIHC	TCGA-DD-A1EG-01	OSBP	ENST00000525357.1,ENST00000263847.1	chr11	59361482:59361728:59367968:59368100:59368291:59368329,	59367969	59368100	59368096	59368096	Frame_Shift_Del	T	-	p.K395fs
LIHC	TCGA-DD-A1EG-01	TCN1	ENST00000257264.3,ENST00000534531.1	chr11	59623415:59623531:59626549:59626740:59628999:59629152,	59626550	59626740	59626598	59626598	Frame_Shift_Del	T	-	p.K233fs
LIHC	TCGA-DD-A1EG-01	TCN1	ENST00000257264.3,ENST00000532419.1	chr11	59630054:59630195:59631379:59631559:59633864:59633944,	59631380	59631559	59631512	59631512	Frame_Shift_Del	T	-	p.M43fs
LIHC	TCGA-DD-A1EG-01	MS4A6A	ENST00000412309.2,ENST00000528851.1,ENST00000530179.1,ENST00000530839.1,ENST00000420732.2,ENST00000529054.1,ENST00000323961.3	chr11	59945732:59945789:59947303:59947438:59949053:59949139,	59947304	59947438	59947304	59947304	Frame_Shift_Del	A	-	p.F94fs
LIHC	TCGA-DD-A1EG-01	MS4A7	ENST00000300184.3	chr11	60150601:60150761:60152560:60152695:60154189:60154246,	60152561	60152695	60152678	60152678	Frame_Shift_Del	T	-	p.F89fs
LIHC	TCGA-DD-A1EG-01	MS4A7	ENST00000534016.1,ENST00000358246.1,ENST00000530614.1,ENST00000528808.1	chr11	60150601:60150761:60154189:60154246:60156862:60157069,	60154190	60154246	60154225	60154225	Frame_Shift_Del	A	-	p.G61fs
LIHC	TCGA-DD-A1EG-01	MS4A1	ENST00000527101.1,ENST00000533306.1	chr11	60229657:60229771:60229890:60230006:60230474:60230594,	60229891	60230006	60230000	60230000	Frame_Shift_Del	T	-	p.T51fs
LIHC	TCGA-DD-A1EG-01	MS4A8	ENST00000532953.1,ENST00000300226.2,ENST00000529752.1,ENST00000450141.2,ENST00000525458.1	chr11	60468449:60468552:60470850:60470973:60474460:60474520,	60470851	60470973	60470917	60470917	Frame_Shift_Del	G	-	p.G96fs
LIHC	TCGA-DD-A1EG-01	MS4A8	ENST00000533691.1	chr11	60468449:60468552:60470750:60470973:60474460:60474520,	60470751	60470973	60470917	60470917	Frame_Shift_Del	G	-	p.G96fs
LIHC	TCGA-DD-A1EG-01	MS4A8	ENST00000300226.2	chr11	60474460:60474520:60476122:60476254:60482493:60482607,	60476123	60476254	60476207	60476207	Frame_Shift_Del	C	-	p.P163fs
LIHC	TCGA-DD-A1EG-01	MS4A8	ENST00000300226.2	chr11	60476122:60476254:60482493:60482607:60482782:60482859,	60482494	60482607	60482567	60482567	Frame_Shift_Del	C	-	p.S203fs
LIHC	TCGA-DD-A1EG-01	MS4A15	ENST00000528170.1,ENST00000405633.3,ENST00000337911.4	chr11	60538763:60538820:60540864:60540957:60541309:60541423,	60540865	60540957	60540939	60540939	Frame_Shift_Del	T	-	p.D160fs
LIHC	TCGA-DD-A1EG-01	ZP1	ENST00000278853.5	chr11	60636629:60636739:60637009:60637373:60637804:60637948,	60637010	60637373	60637066	60637066	Frame_Shift_Del	G	-	p.V125fs
LIHC	TCGA-DD-A1EG-01	VWCE	ENST00000538438.1,ENST00000301770.6,ENST00000335613.5,ENST00000535710.1	chr11	61032427:61032510:61032593:61032684:61034933:61035016,	61032594	61032684	61032661	61032661	Frame_Shift_Del	G	-	p.P663fs
LIHC	TCGA-DD-A1EG-01	DDB1	ENST00000540166.1,ENST00000539332.1,ENST00000450997.2,ENST00000301764.7	chr11	61071336:61071507:61076454:61076549:61077267:61077432,	61076455	61076549	61076480	61076480	Frame_Shift_Del	T	-	p.K879fs
LIHC	TCGA-DD-A1EG-01	DDB1	ENST00000543162.1	chr11	61097429:61097546:61099014:61099163:61100379:61100480,61094250:61094365:61099014:61099163:61100379:61100480,	61099015	61099163	61099118	61099118	Frame_Shift_Del	T	-	p.N36fs
LIHC	TCGA-DD-A1EG-01	CPSF7	ENST00000537162.1,ENST00000544669.1,ENST00000394888.4,ENST00000340437.4	chr11	61183971:61183991:61187393:61187566:61188861:61189080,61183971:61183991:61187393:61187566:61187941:61188002,	61187394	61187566	61187524	61187524	Frame_Shift_Del	T	-	p.K183fs
LIHC	TCGA-DD-A1EG-01	CPSF7	ENST00000535222.1,ENST00000544585.1,ENST00000413232.1,ENST00000539952.1,ENST00000477890.2,ENST00000448745.1,ENST00000439958.3	chr11	61183971:61183991:61187420:61187566:61187941:61188002,	61187421	61187566	61187524	61187524	Frame_Shift_Del	T	-	p.K183fs
LIHC	TCGA-DD-A1EG-01	FADS1	ENST00000542506.1,ENST00000433932.1,ENST00000350997.7	chr11	61574135:61574196:61578222:61578351:61578445:61578547,	61578223	61578351	61578241	61578241	Frame_Shift_Del	C	-	p.G299fs
LIHC	TCGA-DD-A1EG-01	BEST1	ENST00000449131.2,ENST00000378043.4	chr11	61725617:61725973:61726969:61727050:61727363:61727515,61725617:61725770:61726969:61727050:61727363:61727515,	61726970	61727050	61727014	61727014	Frame_Shift_Del	T	-	p.D244fs
LIHC	TCGA-DD-A1EG-01	BEST1	ENST00000449131.2,ENST00000378043.4	chr11	61725617:61725973:61726969:61727050:61727363:61727515,61725617:61725770:61726969:61727050:61727363:61727515,	61726970	61727050	61727024	61727024	Frame_Shift_Del	A	-	p.N248fs
LIHC	TCGA-DD-A1EG-01	ASRGL1	ENST00000526096.1,ENST00000534571.1,ENST00000415229.2,ENST00000301776.5	chr11	62105465:62105639:62123796:62123939:62124458:62124604,	62123797	62123939	62123802	62123802	Frame_Shift_Del	G	-	p.G66fs
LIHC	TCGA-DD-A1EG-01	ASRGL1	ENST00000535727.1,ENST00000529226.1,ENST00000534183.1	chr11	62105465:62105639:62124458:62124616:62156604:62156637,	62124459	62124616	62124471	62124471	Frame_Shift_Del	T	-	p.F116fs
LIHC	TCGA-DD-A1EG-01	MTA2	ENST00000278823.2,ENST00000527204.1,ENST00000526844.1	chr11	62365993:62366111:62367637:62367731:62368093:62368161,	62367638	62367731	62367691	62367691	Frame_Shift_Del	A	-	p.F46fs
LIHC	TCGA-DD-A1EG-01	B3GAT3	ENST00000532585.1,ENST00000265471.5	chr11	62382922:62383271:62383977:62384268:62384458:62384819,	62383978	62384268	62384058	62384058	Frame_Shift_Del	G	-	p.R277fs
LIHC	TCGA-DD-A1EG-01	B3GAT3	ENST00000532585.1,ENST00000265471.5	chr11	62382922:62383271:62383977:62384268:62384458:62384819,	62383978	62384268	62384104	62384104	Frame_Shift_Del	G	-	p.P261fs
LIHC	TCGA-DD-A1EG-01	STX5	ENST00000491231.1,ENST00000294179.3	chr11	62595048:62595103:62598490:62598734:62599425:62599503,	62598491	62598734	62598585	62598585	Frame_Shift_Del	G	-	p.P44fs
LIHC	TCGA-DD-A1EG-01	SLC3A2	ENST00000377892.1,ENST00000536981.1,ENST00000377891.2,ENST00000377890.2,ENST00000377889.2,ENST00000457660.2,ENST00000535296.1,ENST00000538682.1,ENST00000539891.1,ENST00000338663.7,ENST00000542922.1,ENST00000541425.1	chr11	62652103:62652162:62652648:62652829:62652936:62653059,	62652649	62652829	62652772	62652772	Frame_Shift_Del	A	-	p.T446fs
LIHC	TCGA-DD-A1EG-01	SLC3A2	ENST00000535768.1	chr11	62652103:62652162:62652648:62653080:62655606:62655641,	62652649	62653080	62652772	62652772	Frame_Shift_Del	A	-	p.T446fs
LIHC	TCGA-DD-A1EG-01	SLC22A24	ENST00000417740.1	chr11	62871646:62871770:62886383:62886552:62886652:62886807,	62886384	62886552	62886410	62886410	Frame_Shift_Del	G	-	p.P268fs
LIHC	TCGA-DD-A1EG-01	SLC22A10	ENST00000544661.1,ENST00000533483.1	chr11	63057418:63057493:63057749:63058039:63059011:63059094,	63057750	63058039	63058018	63058018	Frame_Shift_Del	C	-	p.F127fs
LIHC	TCGA-DD-A1EG-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072213	63072213	Frame_Shift_Del	C	-	p.P484fs
LIHC	TCGA-DD-A1EG-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072237	63072237	Frame_Shift_Del	T	-	p.F493fs
LIHC	TCGA-DD-A1EG-01	SLC22A9	ENST00000279178.3,ENST00000310969.4	chr11	63175583:63175692:63176147:63176351:63177273:63177430,	63176148	63176351	63176160	63176160	Frame_Shift_Del	G	-	p.M470fs
LIHC	TCGA-DD-A1EG-01	RCOR2	ENST00000301459.4	chr11	63680341:63680419:63681425:63681641:63681732:63681802,	63681426	63681641	63681513	63681513	Frame_Shift_Del	T	-	p.E268fs
LIHC	TCGA-DD-A1EG-01	TRPT1	ENST00000317459.6,ENST00000539595.1,ENST00000394546.2,ENST00000536158.1,ENST00000394547.3,ENST00000539436.1	chr11	63991327:63991439:63991571:63991682:63991756:63991813,	63991572	63991682	63991650	63991650	Frame_Shift_Del	C	-	p.V200fs
LIHC	TCGA-DD-A1EG-01	PLCB3	ENST00000279230.6,ENST00000540288.1	chr11	64022219:64022288:64022369:64022510:64022705:64022785,	64022370	64022510	64022400	64022400	Frame_Shift_Del	G	-	p.G94fs
LIHC	TCGA-DD-A1EG-01	KCNK4	ENST00000539216.1,ENST00000394525.2,ENST00000422670.2	chr11	64064349:64064473:64064590:64064751:64064938:64065125,	64064591	64064751	64064641	64064641	Frame_Shift_Del	T	-	p.F122fs
LIHC	TCGA-DD-A1EG-01	KCNK4	ENST00000539216.1,ENST00000394525.2,ENST00000422670.2	chr11	64064349:64064473:64064590:64064751:64064938:64065125,	64064591	64064751	64064686	64064686	Frame_Shift_Del	G	-	p.G137fs
LIHC	TCGA-DD-A1EG-01	RPS6KA4	ENST00000528057.1,ENST00000532885.1,ENST00000334205.4,ENST00000528355.1,ENST00000530504.1,ENST00000294261.4	chr11	64129378:64129474:64132772:64132937:64135603:64135648,	64132773	64132937	64132824	64132824	Frame_Shift_Del	C	-	p.P320fs
LIHC	TCGA-DD-A1EG-01	RASGRP2	ENST00000464324.1,ENST00000377497.3,ENST00000377494.1,ENST00000421556.1,ENST00000488071.1,ENST00000354024.3,ENST00000394432.3	chr11	64496334:64496514:64497233:64497270:64497524:64497666,	64497234	64497270	64497248	64497248	Frame_Shift_Del	C	-	p.G526fs
LIHC	TCGA-DD-A1EG-01	RASGRP2	ENST00000394429.1	chr11	64508539:64508551:64508910:64509005:64510265:64510409,	64508911	64509005	64508927	64508927	Frame_Shift_Del	T	-	p.T75fs
LIHC	TCGA-DD-A1EG-01	PYGM	ENST00000377432.3,ENST00000164139.3	chr11	64514392:64514459:64514695:64514830:64517847:64518055,	64514696	64514830	64514749	64514749	Frame_Shift_Del	G	-	p.P753fs
LIHC	TCGA-DD-A1EG-01	PYGM	ENST00000377432.3,ENST00000164139.3	chr11	64514695:64514830:64517847:64518055:64518796:64518938,	64517848	64518055	64517902	64517902	Frame_Shift_Del	T	-	p.N708fs
LIHC	TCGA-DD-A1EG-01	CDC42BPG	ENST00000342711.5	chr11	64594142:64594266:64594521:64594639:64594749:64594870,	64594522	64594639	64594607	64594607	Frame_Shift_Del	T	-	p.K1435fs
LIHC	TCGA-DD-A1EG-01	EHD1	ENST00000359393.2,ENST00000320631.3,ENST00000421510.1	chr11	64622083:64622329:64622793:64622958:64627395:64627517,	64622794	64622958	64622891	64622891	Frame_Shift_Del	T	-	p.K329fs
LIHC	TCGA-DD-A1EG-01	EHD1	ENST00000359393.2,ENST00000320631.3,ENST00000433803.1,ENST00000421510.1	chr11	64622793:64622958:64627395:64627808:64641892:64641990,	64627396	64627808	64627737	64627737	Frame_Shift_Del	G	-	p.H192fs
LIHC	TCGA-DD-A1EG-01	EHD1	ENST00000359393.2,ENST00000466015.1,ENST00000433803.1	chr11	64627416:64627808:64641892:64641990:64645532:64645956,	64641893	64641990	64641963	64641963	Frame_Shift_Del	G	-	p.P144fs
LIHC	TCGA-DD-A1EG-01	ATG2A	ENST00000421419.2,ENST00000418259.1,ENST00000377264.3	chr11	64665557:64665642:64665732:64665834:64666107:64666314,	64665733	64665834	64665805	64665805	Frame_Shift_Del	G	-	p.P1569fs
LIHC	TCGA-DD-A1EG-01	PPP2R5B	ENST00000526559.1,ENST00000532850.1,ENST00000164133.2	chr11	64693319:64693405:64694183:64694380:64695273:64695375,	64694184	64694380	64694354	64694354	Frame_Shift_Del	C	-	p.P124fs
LIHC	TCGA-DD-A1EG-01	NAALADL1	ENST00000340252.4,ENST00000355369.2,ENST00000529274.1,ENST00000528977.1,ENST00000358658.3,ENST00000356632.3,ENST00000339885.2	chr11	64821926:64822210:64824842:64824965:64825346:64825468,	64824843	64824965	64824940	64824940	Frame_Shift_Del	C	-	p.G169fs
LIHC	TCGA-DD-A1EG-01	DPF2	ENST00000444314.2,ENST00000415073.2,ENST00000252268.4,ENST00000532102.1	chr11	65101347:65101389:65107855:65108016:65108436:65108544,	65107856	65108016	65107860	65107860	Frame_Shift_Del	G	-	p.G13fs
LIHC	TCGA-DD-A1EG-01	FRMD8	ENST00000317568.5,ENST00000416776.2,ENST00000355991.5	chr11	65168194:65168338:65172334:65172539:65178712:65179251,	65172335	65172539	65172379	65172379	Frame_Shift_Del	C	-	p.S372fs
LIHC	TCGA-DD-A1EG-01	MAP3K11	ENST00000524848.1,ENST00000530153.1,ENST00000309100.3,ENST00000532507.1	chr11	65366921:65367239:65373231:65373323:65373416:65373552,	65373232	65373323	65373266	65373266	Frame_Shift_Del	G	-	p.P599fs
LIHC	TCGA-DD-A1EG-01	EFEMP2	ENST00000526911.1	chr11	65634035:65634183:65634491:65634550:65635331:65635377,	65634492	65634550	65634496	65634496	Frame_Shift_Del	G	-	p.R409fs
LIHC	TCGA-DD-A1EG-01	EFEMP2	ENST00000524408.1	chr11	65634035:65634183:65634336:65634550:65635331:65635377,	65634337	65634550	65634496	65634496	Frame_Shift_Del	G	-	p.R409fs
LIHC	TCGA-DD-A1EG-01	EFEMP2	ENST00000531972.1	chr11	65634035:65634183:65634315:65634550:65635331:65635377,	65634316	65634550	65634496	65634496	Frame_Shift_Del	G	-	p.R409fs
LIHC	TCGA-DD-A1EG-01	EFEMP2	ENST00000526628.1	chr11	65634035:65634183:65634280:65634550:65635331:65635377,	65634281	65634550	65634496	65634496	Frame_Shift_Del	G	-	p.R409fs
LIHC	TCGA-DD-A1EG-01	CTSW	ENST00000526034.1,ENST00000528419.1	chr11	65647328:65647412:65647672:65647757:65648877:65648991,	65647673	65647757	65647744	65647744	Frame_Shift_Del	C	-	p.Y53fs
LIHC	TCGA-DD-A1EG-01	DRAP1	ENST00000312515.2,ENST00000531121.1,ENST00000527119.1,ENST00000532933.1	chr11	65687477:65687512:65687813:65687933:65688039:65688133,	65687814	65687933	65687886	65687886	Frame_Shift_Del	G	-	p.Q94fs
LIHC	TCGA-DD-A1EG-01	BANF1	ENST00000445560.2	chr11	65770314:65770541:65770705:65770844:65771096:65771149,65769786:65769984:65770705:65770844:65771096:65771149,	65770706	65770844	65770766	65770766	Frame_Shift_Del	G	-	p.M15fs
LIHC	TCGA-DD-A1EG-01	KLC2	ENST00000440228.2,ENST00000475757.2,ENST00000394078.1,ENST00000394067.2,ENST00000316924.5,ENST00000417856.1	chr11	66026054:66026293:66029212:66029443:66029593:66029632,	66029213	66029443	66029239	66029239	Frame_Shift_Del	G	-	p.L85fs
LIHC	TCGA-DD-A1EG-01	CNIH2	ENST00000528852.1,ENST00000530519.1,ENST00000311445.6	chr11	66049729:66049798:66050203:66050251:66050505:66050618,	66050204	66050251	66050215	66050215	Frame_Shift_Del	A	-	p.L54fs
LIHC	TCGA-DD-A1EG-01	RIN1	ENST00000424433.2,ENST00000530745.1	chr11	66103080:66103153:66103232:66103347:66103448:66103479,66103080:66103153:66103232:66103347:66103787:66103877,	66103233	66103347	66103273	66103273	Frame_Shift_Del	G	-	p.P114fs
LIHC	TCGA-DD-A1EG-01	SLC29A2	ENST00000541567.1	chr11	66136007:66136142:66136530:66136602:66136839:66136994,	66136531	66136602	66136577	66136577	Frame_Shift_Del	G	-	p.P123fs
LIHC	TCGA-DD-A1EG-01	SLC29A2	ENST00000357440.2,ENST00000544554.1,ENST00000311161.7,ENST00000540386.1,ENST00000546034.1	chr11	66136007:66136142:66136530:66136670:66136839:66136994,	66136531	66136670	66136577	66136577	Frame_Shift_Del	G	-	p.P123fs
LIHC	TCGA-DD-A1EG-01	DPP3	ENST00000541961.1,ENST00000532019.1,ENST00000360510.2,ENST00000532677.1,ENST00000531863.1,ENST00000453114.1,ENST00000531354.2	chr11	66249759:66249941:66252643:66252733:66254010:66254063,	66252644	66252733	66252728	66252728	Frame_Shift_Del	C	-	p.P138fs
LIHC	TCGA-DD-A1EG-01	KDM2A	ENST00000529006.2,ENST00000398645.2	chr11	66949316:66949363:66974980:66975159:66982810:66982917,	66974981	66975159	66975108	66975108	Frame_Shift_Del	C	-	p.S145fs
LIHC	TCGA-DD-A1EG-01	SSH3	ENST00000376757.5,ENST00000308127.4,ENST00000532181.1,ENST00000308298.7	chr11	67071593:67071626:67072243:67072478:67074308:67074381,	67072244	67072478	67072365	67072365	Frame_Shift_Del	G	-	p.G76fs
LIHC	TCGA-DD-A1EG-01	SSH3	ENST00000532881.1	chr11	67071593:67071626:67072247:67072478:67074308:67074381,	67072248	67072478	67072365	67072365	Frame_Shift_Del	G	-	p.G76fs
LIHC	TCGA-DD-A1EG-01	PITPNM1	ENST00000534749.1,ENST00000356404.3	chr11	67263648:67263816:67264701:67264907:67264992:67265150,67263648:67263819:67264701:67264907:67264992:67265150,	67264702	67264907	67264808	67264808	Frame_Shift_Del	G	-	p.P680fs
LIHC	TCGA-DD-A1EG-01	NDUFV1	ENST00000532303.1,ENST00000526169.1,ENST00000415352.2,ENST00000322776.6,ENST00000529927.1	chr11	67376922:67377106:67377851:67378041:67378465:67378678,	67377852	67378041	67378013	67378013	Frame_Shift_Del	C	-	p.R224fs
LIHC	TCGA-DD-A1EG-01	ALDH3B2	ENST00000530069.1,ENST00000349015.3,ENST00000534425.1,ENST00000525827.1	chr11	67433018:67433142:67433592:67433674:67433786:67433872,	67433593	67433674	67433644	67433644	Frame_Shift_Del	G	-	p.Q90fs
LIHC	TCGA-DD-A1EG-01	UNC93B1	ENST00000227471.2,ENST00000530331.1,ENST00000525743.1	chr11	67765165:67765269:67765828:67765922:67766642:67766664,	67765829	67765922	67765856	67765856	Frame_Shift_Del	G	-	p.H252fs
LIHC	TCGA-DD-A1EG-01	TCIRG1	ENST00000533947.1	chr11	67810109:67810330:67810412:67810964:67811037:67811057,	67810413	67810964	67810434	67810434	Frame_Shift_Del	G	-	p.G147fs
LIHC	TCGA-DD-A1EG-01	TCIRG1	ENST00000534673.1	chr11	67810109:67810330:67810412:67810498:67811037:67811057,	67810413	67810498	67810434	67810434	Frame_Shift_Del	G	-	p.G147fs
LIHC	TCGA-DD-A1EG-01	TCIRG1	ENST00000533947.1	chr11	67810109:67810330:67810412:67810964:67811037:67811057,	67810413	67810964	67810470	67810470	Frame_Shift_Del	G	-	p.G160fs
LIHC	TCGA-DD-A1EG-01	TCIRG1	ENST00000534673.1	chr11	67810109:67810330:67810412:67810498:67811037:67811057,	67810413	67810498	67810470	67810470	Frame_Shift_Del	G	-	p.G160fs
LIHC	TCGA-DD-A1EG-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68197045:68197168:68201069:68201306:68204356:68204462,	68201070	68201306	68201191	68201191	Frame_Shift_Del	C	-	p.C1295fs
LIHC	TCGA-DD-A1EG-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68204356:68204467:68205913:68206150:68207244:68207384,	68205914	68206150	68206110	68206110	Frame_Shift_Del	T	-	p.N1436fs
LIHC	TCGA-DD-A1EG-01	PPP6R3	ENST00000529710.1,ENST00000265636.5	chr11	68326109:68326147:68331770:68331900:68334481:68334634,68326109:68326147:68331770:68331900:68337215:68337365,	68331771	68331900	68331895	68331895	Frame_Shift_Del	C	-	p.P324fs
LIHC	TCGA-DD-A1EG-01	CPT1A	ENST00000565318.1,ENST00000569129.1,ENST00000376618.2,ENST00000539743.1,ENST00000265641.5	chr11	68575034:68575106:68579904:68580044:68582801:68582955,	68579905	68580044	68580009	68580009	Frame_Shift_Del	G	-	p.P59fs
LIHC	TCGA-DD-A1EG-01	ANO1	ENST00000531349.1,ENST00000398543.2,ENST00000355303.5,ENST00000530480.1,ENST00000316296.5,ENST00000538023.1,ENST00000530676.1	chr11	69970455:69970520:69972166:69972301:69978024:69978139,	69972167	69972301	69972233	69972233	Frame_Shift_Del	C	-	p.I343fs
LIHC	TCGA-DD-A1EG-01	PPFIA1	ENST00000389547.3,ENST00000530294.1,ENST00000253925.7	chr11	70189856:70189998:70194294:70194526:70200406:70200558,	70194295	70194526	70194511	70194511	Frame_Shift_Del	G	-	p.L716fs
LIHC	TCGA-DD-A1EG-01	FAM86C1	ENST00000528685.1	chr11	71500828:71500891:71507062:71507354:71510606:71511145,	71507063	71507354	71507218	71507218	Frame_Shift_Del	C	-	p.S105fs
LIHC	TCGA-DD-A1EG-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72422474:72422544:72423240:72423384:72423482:72423613,	72423241	72423384	72423301	72423301	Frame_Shift_Del	C	-	p.G321fs
LIHC	TCGA-DD-A1EG-01	STARD10	ENST00000545082.1,ENST00000537351.1,ENST00000543304.1,ENST00000544767.1,ENST00000538536.1,ENST00000537947.1,ENST00000334805.6	chr11	72466745:72466798:72468811:72468929:72469574:72469678,	72468812	72468929	72468858	72468858	Frame_Shift_Del	C	-	p.G177fs
LIHC	TCGA-DD-A1EG-01	ATG16L2	ENST00000544490.1,ENST00000536995.1,ENST00000439504.2,ENST00000541367.1,ENST00000321297.5,ENST00000540222.1,ENST00000435507.2	chr11	72539773:72539821:72539927:72540029:72540347:72540640,	72539928	72540029	72540022	72540022	Frame_Shift_Del	C	-	p.P589fs
LIHC	TCGA-DD-A1EG-01	FCHSD2	ENST00000409314.1,ENST00000311172.7,ENST00000409853.1,ENST00000458644.2,ENST00000409418.4	chr11	72578909:72579071:72598514:72598619:72600873:72600990,	72598515	72598619	72598550	72598550	Frame_Shift_Del	T	-	p.I395fs
LIHC	TCGA-DD-A1EG-01	FCHSD2	ENST00000409314.1,ENST00000311172.7,ENST00000422375.1,ENST00000409418.4	chr11	72712034:72712179:72726853:72726930:72794739:72794785,	72726854	72726930	72726886	72726886	Frame_Shift_Del	A	-	p.P70fs
LIHC	TCGA-DD-A1EG-01	FAM168A	ENST00000450446.2	chr11	73117027:73117789:73118557:73118688:73120531:73120706,73117027:73117789:73118557:73118688:73130918:73131044,	73118558	73118688	73118617	73118617	Frame_Shift_Del	G	-	p.Q232fs
LIHC	TCGA-DD-A1EG-01	RAB6A	ENST00000541588.1	chr11	73390730:73390765:73431890:73431944:73441809:73441868,	73431891	73431944	73431914	73431914	Frame_Shift_Del	T	-	p.T54fs
LIHC	TCGA-DD-A1EG-01	C2CD3	ENST00000538625.1,ENST00000334126.7	chr11	73744874:73745323:73748522:73748743:73753098:73753205,	73748523	73748743	73748673	73748673	Frame_Shift_Del	G	-	p.L1911fs
LIHC	TCGA-DD-A1EG-01	C2CD3	ENST00000442398.2	chr11	73744874:73745323:73748522:73748697:73753098:73753263,	73748523	73748697	73748673	73748673	Frame_Shift_Del	G	-	p.L1911fs
LIHC	TCGA-DD-A1EG-01	C2CD3	ENST00000313663.7,ENST00000415191.2,ENST00000539061.1,ENST00000334126.7	chr11	73850862:73850873:73872443:73872601:73879388:73879658,	73872444	73872601	73872486	73872486	Frame_Shift_Del	A	-	p.F147fs
LIHC	TCGA-DD-A1EG-01	XRRA1	ENST00000531449.1,ENST00000321448.8,ENST00000340360.6	chr11	74554394:74554498:74554898:74555004:74555212:74555328,	74554899	74555004	74554979	74554979	Frame_Shift_Del	G	-	p.P682fs
LIHC	TCGA-DD-A1EG-01	XRRA1	ENST00000321448.8	chr11	74570211:74570328:74574025:74574066:74617283:74617397,74563078:74563127:74574025:74574066:74617283:74617397,	74574026	74574066	74574037	74574037	Frame_Shift_Del	A	-	p.S337fs
LIHC	TCGA-DD-A1EG-01	NEU3	ENST00000531619.1	chr11	74700062:74700199:74705553:74705765:74716457:74716514,74700062:74700199:74705553:74705765:74715349:74715450,	74705554	74705765	74705655	74705655	Frame_Shift_Del	C	-	p.P67fs
LIHC	TCGA-DD-A1EG-01	GDPD5	ENST00000527820.1,ENST00000376282.3,ENST00000336898.3,ENST00000443276.2,ENST00000533784.1,ENST00000533805.1,ENST00000529721.1,ENST00000526177.1	chr11	75152734:75152848:75153407:75153626:75154180:75154331,	75153408	75153626	75153599	75153599	Frame_Shift_Del	G	-	p.L188fs
LIHC	TCGA-DD-A1EG-01	MAP6	ENST00000526740.1,ENST00000304771.3	chr11	75299155:75299229:75316852:75317049:75319153:75319367,	75316853	75317049	75316890	75316890	Frame_Shift_Del	T	-	p.S427fs
LIHC	TCGA-DD-A1EG-01	UVRAG	ENST00000356136.3,ENST00000528420.1,ENST00000532130.1,ENST00000531818.1	chr11	75719850:75719911:75727858:75728024:75776753:75776832,	75727859	75728024	75727883	75727883	Frame_Shift_Del	T	-	p.V362fs
LIHC	TCGA-DD-A1EG-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76372428	76372428	Frame_Shift_Del	C	-	p.G70fs
LIHC	TCGA-DD-A1EG-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873961	76873961	Frame_Shift_Del	C	-	p.I539fs
LIHC	TCGA-DD-A1EG-01	MYO7A	ENST00000409709.3,ENST00000458169.2,ENST00000481328.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76893472:76893645:76894112:76894202:76895632:76895760,	76894113	76894202	76894176	76894176	Frame_Shift_Del	A	-	p.K1119fs
LIHC	TCGA-DD-A1EG-01	PAK1	ENST00000356341.3,ENST00000527457.1,ENST00000525542.1	chr11	77036372:77036421:77043774:77043912:77047130:77047304,77040194:77040357:77043774:77043912:77047130:77047327,77034313:77034405:77043774:77043912:77047130:77047304,	77043775	77043912	77043866	77043866	Frame_Shift_Del	G	-	p.P487fs
LIHC	TCGA-DD-A1EG-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77411950	77411950	Frame_Shift_Del	A	-	p.L775fs
LIHC	TCGA-DD-A1EG-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77411983	77411983	Frame_Shift_Del	T	-	p.K764fs
LIHC	TCGA-DD-A1EG-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412557	77412557	Frame_Shift_Del	T	-	p.T573fs
LIHC	TCGA-DD-A1EG-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77413116	77413116	Frame_Shift_Del	T	-	p.K386fs
LIHC	TCGA-DD-A1EG-01	GAB2	ENST00000340149.2,ENST00000361507.4	chr11	77938002:77938097:77961202:77961446:77991646:77991947,	77961203	77961446	77961272	77961272	Frame_Shift_Del	A	-	p.L184fs
LIHC	TCGA-DD-A1EG-01	GAB2	ENST00000340149.2,ENST00000361507.4	chr11	77938002:77938097:77961202:77961446:77991646:77991947,	77961203	77961446	77961299	77961299	Frame_Shift_Del	G	-	p.P175fs
LIHC	TCGA-DD-A1EG-01	TENM4	ENST00000278550.7	chr11	78437123:78437267:78440420:78440688:78443360:78443622,	78440421	78440688	78440611	78440611	Frame_Shift_Del	T	-	p.K1072fs
LIHC	TCGA-DD-A1EG-01	PCF11	ENST00000530304.1,ENST00000530660.1	chr11	82868200:82868673:82872368:82872494:82874720:82874827,	82872369	82872494	82872456	82872456	Frame_Shift_Del	A	-	p.K94fs
LIHC	TCGA-DD-A1EG-01	PICALM	ENST00000532317.1,ENST00000356360.5,ENST00000534412.1,ENST00000526033.1,ENST00000528398.1,ENST00000393346.3	chr11	85714408:85714494:85718584:85718626:85722072:85722178,	85718585	85718626	85718590	85718590	Frame_Shift_Del	A	-	p.S268fs
LIHC	TCGA-DD-A1EG-01	ME3	ENST00000530520.1,ENST00000359636.2,ENST00000393324.3,ENST00000543262.1,ENST00000526504.1,ENST00000323418.6,ENST00000524826.1	chr11	86198378:86198482:86209004:86209166:86219833:86219909,	86209005	86209166	86209036	86209036	Frame_Shift_Del	G	-	p.P225fs
LIHC	TCGA-DD-A1EG-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87006823:87006865:87013337:87013484:87016977:87017047,	87013338	87013484	87013374	87013374	Frame_Shift_Del	T	-	p.S174fs
LIHC	TCGA-DD-A1EG-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87006823:87006865:87013337:87013484:87016977:87017047,	87013338	87013484	87013430	87013430	Frame_Shift_Del	A	-	p.E193fs
LIHC	TCGA-DD-A1EG-01	TYR	ENST00000263321.5	chr11	88960990:88961138:89017940:89018122:89028310:89028476,	89017941	89018122	89017943	89017943	Frame_Shift_Del	T	-	p.I396fs
LIHC	TCGA-DD-A1EG-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000263317.4,ENST00000413594.2,ENST00000527626.1,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89133184:89133247:89133382:89133547:89135493:89135710,	89133383	89133547	89133522	89133522	Frame_Shift_Del	A	-	p.L267fs
LIHC	TCGA-DD-A1EG-01	NAALAD2	ENST00000534061.1,ENST00000321955.4	chr11	89909139:89909230:89911020:89911285:89914787:89914869,	89911021	89911285	89911108	89911108	Frame_Shift_Del	A	-	p.K562fs
LIHC	TCGA-DD-A1EG-01	CHORDC1	ENST00000320585.6,ENST00000525317.1,ENST00000457199.2	chr11	89943703:89943762:89944382:89944486:89947185:89947343,	89944383	89944486	89944452	89944452	Frame_Shift_Del	T	-	p.I122fs
LIHC	TCGA-DD-A1EG-01	MED17	ENST00000533133.1	chr11	93523739:93523959:93526893:93527201:93528073:93528226,	93526894	93527201	93526996	93526996	Frame_Shift_Del	T	-	p.I247fs
LIHC	TCGA-DD-A1EG-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117195	96117195	Frame_Shift_Del	T	-	p.K239fs
LIHC	TCGA-DD-A1EG-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117221	96117221	Frame_Shift_Del	T	-	p.T231fs
LIHC	TCGA-DD-A1EG-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117362	96117362	Frame_Shift_Del	T	-	p.R184fs
LIHC	TCGA-DD-A1EG-01	ARHGAP42	ENST00000298815.8	chr11	100558406:100558563:100641073:100641169:100665835:100665897,	100641074	100641169	100641101	100641101	Frame_Shift_Del	C	-	p.S61fs
LIHC	TCGA-DD-A1EG-01	ARHGAP42	ENST00000298815.8	chr11	100665835:100665897:100730284:100730356:100784182:100784255,	100730285	100730356	100730332	100730332	Frame_Shift_Del	A	-	p.R120fs
LIHC	TCGA-DD-A1EG-01	TRPC6	ENST00000348423.4,ENST00000344327.3,ENST00000532133.1,ENST00000360497.4	chr11	101325748:101325832:101340157:101340232:101341913:101342117,	101340158	101340232	101340161	101340161	Frame_Shift_Del	T	-	p.K827fs
LIHC	TCGA-DD-A1EG-01	BIRC2	ENST00000532672.1	chr11	102219328:102219495:102220608:102221480:102221574:102221674,	102220609	102221480	102220798	102220798	Frame_Shift_Del	T	-	p.G71fs
LIHC	TCGA-DD-A1EG-01	BIRC2	ENST00000227758.2	chr11	102217999:102218107:102219328:102221480:102221574:102221674,	102219329	102221480	102220798	102220798	Frame_Shift_Del	T	-	p.G71fs
LIHC	TCGA-DD-A1EG-01	BIRC2	ENST00000530675.1	chr11	102217999:102218107:102220731:102221480:102221574:102221674,	102220732	102221480	102220798	102220798	Frame_Shift_Del	T	-	p.G71fs
LIHC	TCGA-DD-A1EG-01	BIRC2	ENST00000527910.1,ENST00000530675.1,ENST00000532672.1,ENST00000227758.2	chr11	102220731:102221480:102221574:102221674:102233626:102233705,	102221575	102221674	102221598	102221598	Frame_Shift_Del	T	-	p.F307fs
LIHC	TCGA-DD-A1EG-01	MMP7	ENST00000533366.1,ENST00000531200.1	chr11	102398254:102398403:102398487:102398714:102401323:102401478,	102398488	102398714	102398606	102398606	Frame_Shift_Del	T	-	p.M73fs
LIHC	TCGA-DD-A1EG-01	MMP10	ENST00000279441.4	chr11	102647342:102647507:102649354:102649480:102649943:102650092,	102649355	102649480	102649410	102649410	Frame_Shift_Del	C	-	p.G189fs
LIHC	TCGA-DD-A1EG-01	MMP10	ENST00000539681.1	chr11	102649943:102650092:102650234:102650476:102651217:102651359,	102650235	102650476	102650395	102650395	Frame_Shift_Del	T	-	p.I63fs
LIHC	TCGA-DD-A1EG-01	DCUN1D5	ENST00000529281.1,ENST00000260247.5,ENST00000531571.1,ENST00000527260.1,ENST00000525420.1	chr11	102937216:102937296:102953476:102953568:102953984:102954055,	102953477	102953568	102953515	102953515	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A1EG-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103182606:103182762:103187273:103187349:103191757:103191966,	103187274	103187349	103187295	103187295	Frame_Shift_Del	T	-	p.F3891fs
LIHC	TCGA-DD-A1EG-01	PDGFD	ENST00000302251.5,ENST00000393158.2	chr11	103777916:103780547:103797639:103797854:103814179:103814378,	103797640	103797854	103797713	103797713	Frame_Shift_Del	T	-	p.N299fs
LIHC	TCGA-DD-A1EG-01	KBTBD3	ENST00000526793.1	chr11	105925079:105925182:105929591:105929836:105947233:105947366,105925079:105925182:105929591:105929836:105948038:105948075,	105929592	105929836	105929664	105929664	Frame_Shift_Del	A	-	p.F54fs
LIHC	TCGA-DD-A1EG-01	AASDHPPT	ENST00000525660.1,ENST00000278618.4	chr11	105962042:105962204:105965309:105965381:105967469:105968025,	105965310	105965381	105965333	105965333	Frame_Shift_Del	T	-	p.H239fs
LIHC	TCGA-DD-A1EG-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299560	107299560	Frame_Shift_Del	T	-	p.K466fs
LIHC	TCGA-DD-A1EG-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299599	107299599	Frame_Shift_Del	T	-	p.K453fs
LIHC	TCGA-DD-A1EG-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299803	107299803	Frame_Shift_Del	T	-	p.K385fs
LIHC	TCGA-DD-A1EG-01	ALKBH8	ENST00000428149.2,ENST00000393100.3,ENST00000417449.2,ENST00000389568.3	chr11	107403039:107403132:107420478:107420549:107422533:107422638,	107420479	107420549	107420485	107420485	Frame_Shift_Del	C	-	p.G255fs
LIHC	TCGA-DD-A1EG-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107968362:107968481:107969132:107969256:107974916:107975629,	107969133	107969256	107969156	107969156	Frame_Shift_Del	G	-	p.R683fs
LIHC	TCGA-DD-A1EG-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044462	108044462	Frame_Shift_Del	A	-	p.S417fs
LIHC	TCGA-DD-A1EG-01	NPAT	ENST00000610253.1	chr11	108064683:108064744:108068028:108068147:108093226:108093343,	108068029	108068147	108068094	108068094	Frame_Shift_Del	T	-	p.S32fs
LIHC	TCGA-DD-A1EG-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108129712:108129802:108137897:108138069:108139136:108139336,	108137898	108138069	108138014	108138014	Frame_Shift_Del	C	-	p.Y861fs
LIHC	TCGA-DD-A1EG-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108138066:108138069:108139136:108139336:108141790:108141873,	108139137	108139336	108139250	108139250	Frame_Shift_Del	T	-	p.F918fs
LIHC	TCGA-DD-A1EG-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108202170:108202284:108202605:108202764:108203488:108203627,	108202606	108202764	108202632	108202632	Frame_Shift_Del	C	-	p.H2552fs
LIHC	TCGA-DD-A1EG-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000525178.1	chr11	108218005:108218092:108224492:108224607:108225537:108225601,	108224493	108224607	108224509	108224509	Frame_Shift_Del	G	-	p.Q2896fs
LIHC	TCGA-DD-A1EG-01	SIK2	ENST00000304987.3	chr11	111558724:111558886:111571609:111571734:111572175:111572299,	111571610	111571734	111571630	111571630	Frame_Shift_Del	T	-	p.F167fs
LIHC	TCGA-DD-A1EG-01	SIK2	ENST00000304987.3	chr11	111558724:111558886:111571609:111571734:111572175:111572299,	111571610	111571734	111571682	111571682	Frame_Shift_Del	C	-	p.A184fs
LIHC	TCGA-DD-A1EG-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113685895:113686104:113688379:113688559:113694326:113694422,	113688380	113688559	113688423	113688423	Frame_Shift_Del	A	-	p.S475fs
LIHC	TCGA-DD-A1EG-01	NNMT	ENST00000535401.1,ENST00000299964.3	chr11	114167149:114167432:114168672:114168880:114182766:114182930,	114168673	114168880	114168831	114168831	Frame_Shift_Del	T	-	p.F105fs
LIHC	TCGA-DD-A1EG-01	BUD13	ENST00000375445.3,ENST00000260210.4,ENST00000419189.1	chr11	116618885:116619291:116627861:116627943:116628481:116628656,	116627862	116627943	116627898	116627898	Frame_Shift_Del	T	-	p.N577fs
LIHC	TCGA-DD-A1EG-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116628984:116629123:116629789:116629895:116631450:116631668,	116629790	116629895	116629874	116629874	Frame_Shift_Del	C	-	p.A426fs
LIHC	TCGA-DD-A1EG-01	SIK3	ENST00000375300.1,ENST00000434315.2,ENST00000465421.1,ENST00000415541.1,ENST00000542607.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116729980:116730320:116731989:116732099:116732556:116732642,	116731990	116732099	116732018	116732018	Frame_Shift_Del	G	-	p.P751fs
LIHC	TCGA-DD-A1EG-01	SIK3	ENST00000542607.1,ENST00000445177.1,ENST00000446921.2	chr11	116732917:116733043:116734383:116734534:116738661:116738805,	116734384	116734534	116734419	116734419	Frame_Shift_Del	T	-	p.M642fs
LIHC	TCGA-DD-A1EG-01	SIK3	ENST00000375300.1,ENST00000434315.2,ENST00000375288.1,ENST00000415541.1,ENST00000542607.1,ENST00000413553.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116746968:116747079:116747639:116747758:116766968:116767092,	116747640	116747758	116747663	116747663	Frame_Shift_Del	C	-	p.D321fs
LIHC	TCGA-DD-A1EG-01	SIK3	ENST00000375300.1,ENST00000375288.1,ENST00000542607.1,ENST00000497049.1,ENST00000413553.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116767908:116768033:116797934:116798096:116824759:116824823,	116797935	116798096	116798063	116798063	Frame_Shift_Del	T	-	p.K163fs
LIHC	TCGA-DD-A1EG-01	SIDT2	ENST00000324225.4,ENST00000532062.1,ENST00000278951.7,ENST00000431081.2	chr11	117063868:117063974:117064568:117064679:117066517:117066631,	117064569	117064679	117064658	117064658	Frame_Shift_Del	C	-	p.F767fs
LIHC	TCGA-DD-A1EG-01	TMPRSS4	ENST00000517544.1,ENST00000517483.1,ENST00000522824.1,ENST00000437212.3,ENST00000519236.1,ENST00000534111.1	chr11	117965536:117965570:117973815:117973968:117975405:117975535,117969757:117969813:117973815:117973968:117975405:117975535,	117973816	117973968	117973946	117973946	Frame_Shift_Del	C	-	p.F94fs
LIHC	TCGA-DD-A1EG-01	MPZL2	ENST00000438295.2,ENST00000534175.2,ENST00000278937.2	chr11	118127952:118128028:118130768:118130916:118133152:118133363,	118130769	118130916	118130786	118130786	Frame_Shift_Del	T	-	p.K189fs
LIHC	TCGA-DD-A1EG-01	CD3E	ENST00000361763.4	chr11	118182867:118182885:118183332:118183581:118184421:118184459,	118183333	118183581	118183376	118183376	Frame_Shift_Del	C	-	p.C49fs
LIHC	TCGA-DD-A1EG-01	UBE4A	ENST00000252108.3,ENST00000431736.2	chr11	118244208:118244400:118245610:118245944:118247288:118247409,	118245611	118245944	118245702	118245702	Frame_Shift_Del	T	-	p.L403fs
LIHC	TCGA-DD-A1EG-01	UBE4A	ENST00000545354.1,ENST00000252108.3,ENST00000431736.2	chr11	118257152:118257327:118260439:118260620:118261371:118261519,	118260440	118260620	118260540	118260540	Frame_Shift_Del	A	-	p.L896fs
LIHC	TCGA-DD-A1EG-01	KMT2A	ENST00000389506.5,ENST00000354520.4,ENST00000534358.1,ENST00000531904.2,ENST00000392873.3	chr11	118352702:118352807:118353136:118353210:118354897:118355029,	118353137	118353210	118353169	118353169	Frame_Shift_Del	C	-	p.P1349fs
LIHC	TCGA-DD-A1EG-01	KMT2A	ENST00000389506.5,ENST00000534358.1	chr11	118354897:118355029:118355576:118355690:118359328:118359475,	118355577	118355690	118355602	118355602	Frame_Shift_Del	G	-	p.W1415fs
LIHC	TCGA-DD-A1EG-01	ARCN1	ENST00000264028.4	chr11	118443167:118443265:118451960:118452224:118453893:118454073,	118451961	118452224	118452062	118452062	Frame_Shift_Del	T	-	p.A76fs
LIHC	TCGA-DD-A1EG-01	ARCN1	ENST00000392859.3,ENST00000264028.4,ENST00000359415.4	chr11	118464304:118464413:118468421:118468626:118471339:118471708,	118468422	118468626	118468442	118468442	Frame_Shift_Del	T	-	p.V462fs
LIHC	TCGA-DD-A1EG-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629513	118629513	Frame_Shift_Del	T	-	p.K321fs
LIHC	TCGA-DD-A1EG-01	UPK2	ENST00000534788.1	chr11	118827679:118827724:118827917:118828024:118828307:118828378,	118827918	118828024	118827953	118827953	Frame_Shift_Del	G	-	p.G82fs
LIHC	TCGA-DD-A1EG-01	UPK2	ENST00000264031.2	chr11	118827679:118827724:118827917:118828056:118828307:118828378,	118827918	118828056	118827953	118827953	Frame_Shift_Del	G	-	p.G82fs
LIHC	TCGA-DD-A1EG-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850222	118850222	Frame_Shift_Del	G	-	p.R152fs
LIHC	TCGA-DD-A1EG-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850310	118850310	Frame_Shift_Del	A	-	p.L181fs
LIHC	TCGA-DD-A1EG-01	HYOU1	ENST00000404233.3,ENST00000532519.2,ENST00000530473.1,ENST00000543287.1,ENST00000525859.1,ENST00000529972.1	chr11	118922801:118922884:118923006:118923141:118923348:118923541,	118923007	118923141	118923061	118923061	Frame_Shift_Del	A	-	p.F356fs
LIHC	TCGA-DD-A1EG-01	DPAGT1	ENST00000409993.2	chr11	118971727:118971848:118972204:118972487:118972813:118973058,	118972205	118972487	118972284	118972284	Frame_Shift_Del	G	-	p.L28fs
LIHC	TCGA-DD-A1EG-01	PDZD3	ENST00000534790.1,ENST00000527028.1	chr11	119058272:119058409:119058648:119059260:119059348:119059576,	119058649	119059260	119058796	119058796	Frame_Shift_Del	G	-	p.G335fs
LIHC	TCGA-DD-A1EG-01	CCDC153	ENST00000415318.1,ENST00000375140.3	chr11	119065632:119065704:119066133:119066209:119066508:119066584,	119066134	119066209	119066174	119066174	Frame_Shift_Del	T	-	p.K8fs
LIHC	TCGA-DD-A1EG-01	POU2F3	ENST00000543440.2,ENST00000260264.4,ENST00000533620.1	chr11	120172994:120173077:120175738:120175921:120176352:120176494,	120175739	120175921	120175902	120175902	Frame_Shift_Del	T	-	p.I205fs
LIHC	TCGA-DD-A1EG-01	TMEM136	ENST00000529187.1,ENST00000314475.2	chr11	120196015:120196077:120197830:120198349:120200685:120200758,	120197831	120198349	120198153	120198153	Frame_Shift_Del	G	-	p.M23fs
LIHC	TCGA-DD-A1EG-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120690463:120690629:120702560:120702739:120707499:120707553,	120702561	120702739	120702651	120702651	Frame_Shift_Del	C	-	p.T201fs
LIHC	TCGA-DD-A1EG-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120707499:120707553:120732667:120732829:120744774:120744927,	120732668	120732829	120732764	120732764	Frame_Shift_Del	T	-	p.F281fs
LIHC	TCGA-DD-A1EG-01	GRIK4	ENST00000438375.2,ENST00000527524.2	chr11	120837903:120838032:120852814:120852933:120856612:120857970,	120852815	120852933	120852898	120852898	Frame_Shift_Del	T	-	p.F827fs
LIHC	TCGA-DD-A1EG-01	TBCEL	ENST00000533712.1	chr11	120925760:120926017:120929053:120929180:120930677:120930794,120924338:120924441:120929053:120929180:120930677:120930794,	120929054	120929180	120929095	120929095	Frame_Shift_Del	C	-	p.P252fs
LIHC	TCGA-DD-A1EG-01	SORL1	ENST00000260197.7	chr11	121414256:121414435:121415951:121416138:121420668:121420797,	121415952	121416138	121416051	121416051	Frame_Shift_Del	C	-	p.T655fs
LIHC	TCGA-DD-A1EG-01	CRTAM	ENST00000227348.4	chr11	122720775:122720922:122722400:122722553:122724650:122724794,	122722401	122722553	122722405	122722405	Frame_Shift_Del	A	-	p.L66fs
LIHC	TCGA-DD-A1EG-01	HSPA8	ENST00000534567.1,ENST00000525624.1,ENST00000527983.1,ENST00000532780.1,ENST00000534624.1,ENST00000532182.1,ENST00000227378.3,ENST00000528292.1,ENST00000527387.1,ENST00000532636.1,ENST00000453788.2	chr11	122930872:122930976:122931300:122931506:122931827:122931966,	122931301	122931506	122931466	122931466	Frame_Shift_Del	A	-	p.V83fs
LIHC	TCGA-DD-A1EG-01	GRAMD1B	ENST00000529750.1,ENST00000534764.1,ENST00000532581.1,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123474133:123474249:123476029:123476186:123477316:123477506,	123476030	123476186	123476080	123476080	Frame_Shift_Del	C	-	p.S263fs
LIHC	TCGA-DD-A1EG-01	GRAMD1B	ENST00000529750.1,ENST00000532581.1,ENST00000450171.2,ENST00000529432.1,ENST00000322282.7,ENST00000456860.2	chr11	123479366:123479510:123480502:123480621:123480903:123481046,	123480503	123480621	123480523	123480523	Frame_Shift_Del	A	-	p.K418fs
LIHC	TCGA-DD-A1EG-01	TBRG1	ENST00000530731.1,ENST00000375005.4,ENST00000284290.4	chr11	124494826:124494897:124495566:124495799:124496708:124496946,124494826:124494897:124495566:124495799:124496799:124496831,	124495567	124495799	124495778	124495778	Frame_Shift_Del	A	-	p.K145fs
LIHC	TCGA-DD-A1EG-01	TBRG1	ENST00000441174.3	chr11	124495661:124495799:124496368:124496505:124496799:124496831,	124496369	124496505	124496443	124496443	Frame_Shift_Del	C	-	p.P177fs
LIHC	TCGA-DD-A1EG-01	ROBO3	ENST00000528144.1	chr11	124746770:124746828:124747414:124747554:124748479:124748609,	124747415	124747554	124747438	124747438	Frame_Shift_Del	C	-	p.A957fs
LIHC	TCGA-DD-A1EG-01	ROBO3	ENST00000529658.1	chr11	124746770:124746828:124747414:124748027:124748193:124748332,	124747415	124748027	124747438	124747438	Frame_Shift_Del	C	-	p.A957fs
LIHC	TCGA-DD-A1EG-01	ROBO3	ENST00000528144.1	chr11	124746770:124746828:124747414:124747554:124748479:124748609,	124747415	124747554	124747484	124747484	Frame_Shift_Del	C	-	p.S972fs
LIHC	TCGA-DD-A1EG-01	ROBO3	ENST00000529658.1	chr11	124746770:124746828:124747414:124748027:124748193:124748332,	124747415	124748027	124747484	124747484	Frame_Shift_Del	C	-	p.S972fs
LIHC	TCGA-DD-A1EG-01	ROBO4	ENST00000306534.3,ENST00000533054.1	chr11	124754936:124755143:124756359:124756718:124756872:124756995,	124756360	124756718	124756593	124756593	Frame_Shift_Del	C	-	p.G854fs
LIHC	TCGA-DD-A1EG-01	ROBO4	ENST00000533054.1	chr11	124766511:124766566:124766827:124766951:124767621:124767742,	124766828	124766951	124766899	124766899	Frame_Shift_Del	C	-	p.G110fs
LIHC	TCGA-DD-A1EG-01	SLC37A2	ENST00000407458.1,ENST00000308074.4,ENST00000526405.1,ENST00000532000.1,ENST00000403796.2,ENST00000298280.5	chr11	124946652:124946734:124947125:124947219:124947345:124947424,	124947126	124947219	124947211	124947211	Frame_Shift_Del	C	-	p.A76fs
LIHC	TCGA-DD-A1EG-01	SLC37A2	ENST00000407458.1,ENST00000308074.4,ENST00000526405.1,ENST00000532000.1,ENST00000403796.2,ENST00000298280.5	chr11	124947345:124947424:124949007:124949143:124949579:124949656,	124949008	124949143	124949018	124949018	Frame_Shift_Del	G	-	p.G109fs
LIHC	TCGA-DD-A1EG-01	SLC37A2	ENST00000407458.1,ENST00000308074.4,ENST00000526405.1,ENST00000532000.1,ENST00000403796.2,ENST00000298280.5	chr11	124947345:124947424:124949007:124949143:124949579:124949656,	124949008	124949143	124949073	124949073	Frame_Shift_Del	T	-	p.L127fs
LIHC	TCGA-DD-A1EG-01	PKNOX2	ENST00000298282.9,ENST00000558705.1	chr11	125221179:125221288:125237741:125237881:125255446:125255514,	125237742	125237881	125237817	125237817	Frame_Shift_Del	C	-	p.P55fs
LIHC	TCGA-DD-A1EG-01	STT3A	ENST00000534472.1,ENST00000392708.4	chr11	125462761:125462813:125465775:125465898:125466953:125467014,	125465776	125465898	125465860	125465860	Frame_Shift_Del	T	-	p.L18fs
LIHC	TCGA-DD-A1EG-01	STT3A	ENST00000531491.1,ENST00000529196.1,ENST00000392708.4,ENST00000525946.1	chr11	125484218:125484321:125488267:125488456:125489905:125490021,	125488268	125488456	125488344	125488344	Frame_Shift_Del	T	-	p.Y618fs
LIHC	TCGA-DD-A1EG-01	DDX25	ENST00000526875.1,ENST00000263576.6,ENST00000525943.1	chr11	125788522:125788685:125791085:125791274:125792714:125792777,	125791086	125791274	125791202	125791202	Frame_Shift_Del	A	-	p.K441fs
LIHC	TCGA-DD-A1EG-01	TIRAP	ENST00000392680.2,ENST00000479770.1,ENST00000392679.1	chr11	126160750:126160856:126162371:126162950:126163562:126164534,	126162372	126162950	126162476	126162476	Frame_Shift_Del	C	-	p.P59fs
LIHC	TCGA-DD-A1EG-01	ETS1	ENST00000535549.1	chr11	128333403:128333522:128350085:128350346:128354717:128354966,128333403:128333522:128350085:128350346:128391807:128392205,	128350086	128350346	128350194	128350194	Frame_Shift_Del	G	-	p.L339fs
LIHC	TCGA-DD-A1EG-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842603	128842603	Frame_Shift_Del	G	-	p.P1252fs
LIHC	TCGA-DD-A1EG-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842690	128842690	Frame_Shift_Del	T	-	p.K1223fs
LIHC	TCGA-DD-A1EG-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128843283	128843283	Frame_Shift_Del	A	-	p.S1026fs
LIHC	TCGA-DD-A1EG-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128844191	128844191	Frame_Shift_Del	G	-	p.P953fs
LIHC	TCGA-DD-A1EG-01	TMEM45B	ENST00000524567.1,ENST00000281441.3	chr11	129725602:129725787:129727207:129727353:129728468:129729110,	129727208	129727353	129727277	129727277	Frame_Shift_Del	T	-	p.F214fs
LIHC	TCGA-DD-A1EG-01	PRDM10	ENST00000533431.1,ENST00000304538.6,ENST00000528746.1,ENST00000360871.3	chr11	129793142:129793298:129794776:129795124:129800910:129801153,	129794777	129795124	129795059	129795059	Frame_Shift_Del	C	-	p.G536fs
LIHC	TCGA-DD-A1EG-01	PRDM10	ENST00000423662.2,ENST00000358825.5,ENST00000304538.6,ENST00000526082.1,ENST00000528746.1,ENST00000360871.3	chr11	129812320:129812524:129814665:129814907:129817039:129817187,	129814666	129814907	129814855	129814855	Frame_Shift_Del	G	-	p.P191fs
LIHC	TCGA-DD-A1EG-01	APLP2	ENST00000539648.1,ENST00000533616.1,ENST00000263574.5	chr11	130005457:130005610:130007150:130007186:130010292:130010342,	130007151	130007186	130007180	130007180	Frame_Shift_Del	A	-	p.K624fs
LIHC	TCGA-DD-A1EG-01	ZBTB44	ENST00000357899.4,ENST00000397753.1,ENST00000525842.1	chr11	130109706:130109791:130130750:130131824:130184269:130184486,	130130751	130131824	130131584	130131584	Frame_Shift_Del	C	-	p.G62fs
LIHC	TCGA-DD-A1EG-01	NTM	ENST00000436745.1	chr11	131240701:131240783:131530822:131530942:131781457:131781510,	131530823	131530942	131530906	131530906	Frame_Shift_Del	G	-	p.G7fs
LIHC	TCGA-DD-A1EG-01	NTM	ENST00000498764.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000496094.1,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132177582:132177717:132180005:132180126:132184445:132184493,	132180006	132180126	132180043	132180043	Frame_Shift_Del	C	-	p.V233fs
LIHC	TCGA-DD-A1EG-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790646	133790646	Frame_Shift_Del	G	-	p.L992fs
LIHC	TCGA-DD-A1EG-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790691	133790691	Frame_Shift_Del	C	-	p.E977fs
LIHC	TCGA-DD-A1EG-01	GLB1L3	ENST00000431683.2,ENST00000455971.2	chr11	134180464:134180545:134180957:134181064:134182242:134182383,	134180958	134181064	134181005	134181005	Frame_Shift_Del	C	-	p.P411fs
LIHC	TCGA-DD-A1EG-01	SLC6A13	ENST00000542272.1	chr12	351779:351920:352844:352979:369016:369223,351779:351920:352844:352979:371954:371982,	352845	352979	352855	352855	Frame_Shift_Del	G	-	p.P109fs
LIHC	TCGA-DD-A1EG-01	SLC6A13	ENST00000539260.1,ENST00000343164.4,ENST00000536842.1	chr12	347113:347176:369016:369223:371954:371982,352844:352979:369016:369223:371954:371982,	369017	369223	369025	369025	Frame_Shift_Del	T	-	p.N65fs
LIHC	TCGA-DD-A1EG-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	431582:431733:432247:432372:432765:432947,	432248	432372	432324	432324	Frame_Shift_Del	T	-	p.K733fs
LIHC	TCGA-DD-A1EG-01	WNK1	ENST00000315939.6,ENST00000537687.1,ENST00000340908.4,ENST00000530271.2	chr12	999618:999679:1003727:1003801:1005236:1005898,	1003728	1003801	1003779	1003779	Frame_Shift_Del	T	-	p.V2114fs
LIHC	TCGA-DD-A1EG-01	ERC1	ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1100463:1100488:1136913:1137738:1192329:1192746,1100432:1100653:1136913:1137738:1192329:1192746,	1136914	1137738	1137560	1137560	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-DD-A1EG-01	ERC1	ENST00000592048.1	chr12	1100428:1100653:1137504:1137738:1192329:1192746,	1137505	1137738	1137560	1137560	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-DD-A1EG-01	CACNA1C	ENST00000399638.1,ENST00000480911.1,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2602367:2602552:2614007:2614111:2621977:2622150,	2614008	2614111	2614074	2614074	Frame_Shift_Del	T	-	p.F395fs
LIHC	TCGA-DD-A1EG-01	CACNA1C	ENST00000399638.1,ENST00000347598.4,ENST00000399629.1	chr12	2721068:2721179:2742794:2742878:2757640:2757673,2721068:2721179:2742794:2742878:2743462:2743540,	2742795	2742878	2742820	2742820	Frame_Shift_Del	T	-	p.V1285fs
LIHC	TCGA-DD-A1EG-01	TULP3	ENST00000397132.2,ENST00000540184.1,ENST00000448120.2	chr12	3018694:3018746:3029928:3030088:3031427:3031568,	3029929	3030088	3030064	3030064	Frame_Shift_Del	C	-	p.P77fs
LIHC	TCGA-DD-A1EG-01	TSPAN9	ENST00000011898.5	chr12	3192818:3192885:3310342:3310422:3387586:3387778,	3310343	3310422	3310367	3310367	Frame_Shift_Del	G	-	p.R3fs
LIHC	TCGA-DD-A1EG-01	RAD51AP1	ENST00000352618.4,ENST00000442992.2,ENST00000228843.9	chr12	4662148:4662313:4665518:4665668:4668022:4668134,	4665519	4665668	4665574	4665574	Frame_Shift_Del	A	-	p.P276fs
LIHC	TCGA-DD-A1EG-01	RAD51AP1	ENST00000398012.3,ENST00000543041.1,ENST00000535558.1	chr12	4662148:4662313:4665518:4665716:4668022:4668136,	4665519	4665716	4665574	4665574	Frame_Shift_Del	A	-	p.P276fs
LIHC	TCGA-DD-A1EG-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736677	4736677	Frame_Shift_Del	G	-	p.T464fs
LIHC	TCGA-DD-A1EG-01	TNFRSF1A	ENST00000536194.1	chr12	6442532:6442682:6442902:6443004:6443256:6443410,	6442903	6443004	6442944	6442944	Frame_Shift_Del	T	-	p.N94fs
LIHC	TCGA-DD-A1EG-01	TNFRSF1A	ENST00000162749.2,ENST00000366159.4,ENST00000437813.3,ENST00000539372.1,ENST00000440083.2	chr12	6442532:6442682:6442902:6443031:6443256:6443410,	6442903	6443031	6442944	6442944	Frame_Shift_Del	T	-	p.N94fs
LIHC	TCGA-DD-A1EG-01	SCNN1A	ENST00000228916.2,ENST00000360168.3,ENST00000358945.3,ENST00000396966.2,ENST00000543768.1	chr12	6464942:6465046:6471216:6471407:6472608:6472791,	6471217	6471407	6471359	6471359	Frame_Shift_Del	C	-	p.V245fs
LIHC	TCGA-DD-A1EG-01	SCNN1A	ENST00000542966.1,ENST00000540037.1	chr12	6464942:6465046:6471233:6471407:6472608:6472791,	6471234	6471407	6471359	6471359	Frame_Shift_Del	C	-	p.V245fs
LIHC	TCGA-DD-A1EG-01	TAPBPL	ENST00000266556.7,ENST00000543567.1,ENST00000539384.1	chr12	6562612:6562882:6566571:6566910:6567810:6567857,	6566572	6566910	6566707	6566707	Frame_Shift_Del	G	-	p.R234fs
LIHC	TCGA-DD-A1EG-01	TAPBPL	ENST00000266556.7,ENST00000543567.1,ENST00000539384.1	chr12	6562612:6562882:6566571:6566910:6567810:6567857,	6566572	6566910	6566817	6566817	Frame_Shift_Del	C	-	p.P271fs
LIHC	TCGA-DD-A1EG-01	MRPL51	ENST00000537701.1	chr12	6601316:6601633:6602027:6602138:6602882:6603006,	6602028	6602138	6602067	6602067	Frame_Shift_Del	T	-	p.R51fs
LIHC	TCGA-DD-A1EG-01	NCAPD2	ENST00000382457.4,ENST00000545732.1,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6623638:6623753:6623938:6624086:6625993:6626037,	6623939	6624086	6623978	6623978	Frame_Shift_Del	C	-	p.D293fs
LIHC	TCGA-DD-A1EG-01	NCAPD2	ENST00000545962.1,ENST00000539885.1,ENST00000315579.5,ENST00000539084.1	chr12	6638682:6638759:6638940:6639124:6639856:6639896,	6638941	6639124	6639044	6639044	Frame_Shift_Del	A	-	p.K1253fs
LIHC	TCGA-DD-A1EG-01	NCAPD2	ENST00000545962.1,ENST00000539885.1,ENST00000315579.5,ENST00000539084.1	chr12	6638682:6638759:6638940:6639124:6639856:6639896,	6638941	6639124	6639073	6639073	Frame_Shift_Del	T	-	p.A1262fs
LIHC	TCGA-DD-A1EG-01	CHD4	ENST00000309577.6,ENST00000544484.1,ENST00000357008.2,ENST00000544040.1,ENST00000545942.1	chr12	6709700:6709835:6710091:6710219:6710454:6710696,	6710092	6710219	6710133	6710133	Frame_Shift_Del	T	-	p.I296fs
LIHC	TCGA-DD-A1EG-01	ING4	ENST00000341550.4,ENST00000437149.2,ENST00000396807.4,ENST00000469749.1,ENST00000467678.1,ENST00000412586.2,ENST00000444704.2,ENST00000488381.1,ENST00000472002.1,ENST00000446105.2	chr12	6760530:6760551:6761436:6761584:6761827:6761933,	6761437	6761584	6761506	6761506	Frame_Shift_Del	G	-	p.P192fs
LIHC	TCGA-DD-A1EG-01	ENO2	ENST00000541477.1,ENST00000544774.1,ENST00000229277.1,ENST00000538763.1,ENST00000535366.1	chr12	7026744:7026878:7027103:7027326:7028729:7028927,	7027104	7027326	7027191	7027191	Frame_Shift_Del	T	-	p.F178fs
LIHC	TCGA-DD-A1EG-01	C12orf57	ENST00000545581.1	chr12	7052704:7052825:7053269:7053336:7053638:7053652,	7053270	7053336	7053301	7053301	Frame_Shift_Del	C	-	p.T6fs
LIHC	TCGA-DD-A1EG-01	C12orf57	ENST00000545581.1,ENST00000229281.5	chr12	7053284:7053336:7053638:7053815:7054933:7055084,	7053639	7053815	7053719	7053719	Frame_Shift_Del	A	-	p.N45fs
LIHC	TCGA-DD-A1EG-01	C12orf57	ENST00000537087.1	chr12	7053284:7053336:7053638:7053728:7054933:7055084,	7053639	7053728	7053719	7053719	Frame_Shift_Del	A	-	p.N45fs
LIHC	TCGA-DD-A1EG-01	C12orf57	ENST00000540506.2	chr12	7053284:7053336:7053542:7053815:7054933:7055084,	7053543	7053815	7053719	7053719	Frame_Shift_Del	A	-	p.N45fs
LIHC	TCGA-DD-A1EG-01	LPCAT3	ENST00000261407.4	chr12	7086528:7086687:7086759:7086907:7087502:7087669,	7086760	7086907	7086787	7086787	Frame_Shift_Del	T	-	p.E387fs
LIHC	TCGA-DD-A1EG-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000443875.1,ENST00000402681.3,ENST00000541647.1	chr12	7170193:7170371:7171570:7171696:7172403:7172482,	7171571	7171696	7171636	7171636	Frame_Shift_Del	G	-	p.G153fs
LIHC	TCGA-DD-A1EG-01	C1S	ENST00000443875.1	chr12	7173821:7173937:7174312:7174421:7174946:7174966,	7174313	7174421	7174390	7174390	Frame_Shift_Del	A	-	p.G345fs
LIHC	TCGA-DD-A1EG-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000470326.1,ENST00000360817.5,ENST00000402681.3	chr12	7173821:7173937:7174342:7174421:7174946:7174966,	7174343	7174421	7174390	7174390	Frame_Shift_Del	A	-	p.G345fs
LIHC	TCGA-DD-A1EG-01	MFAP5	ENST00000537009.1,ENST00000544889.1,ENST00000535411.1,ENST00000359478.2,ENST00000538694.1,ENST00000534833.1	chr12	8803159:8803185:8804257:8804287:8807032:8807077,	8804258	8804287	8804269	8804269	Frame_Shift_Del	T	-	p.N79fs
LIHC	TCGA-DD-A1EG-01	A2M	ENST00000318602.7,ENST00000472360.1	chr12	9251202:9251352:9251976:9252119:9253739:9253803,	9251977	9252119	9252105	9252105	Frame_Shift_Del	A	-	p.S525fs
LIHC	TCGA-DD-A1EG-01	A2M	ENST00000404455.2	chr12	9265955:9266139:9268359:9268462:9268723:9268825,	9268360	9268462	9268425	9268425	Frame_Shift_Del	A	-	p.L7fs
LIHC	TCGA-DD-A1EG-01	PZP	ENST00000381997.2,ENST00000535230.1,ENST00000261336.2	chr12	9307211:9307435:9309770:9309951:9310362:9310437,	9309771	9309951	9309821	9309821	Frame_Shift_Del	T	-	p.N1167fs
LIHC	TCGA-DD-A1EG-01	CLEC1B	ENST00000298527.6	chr12	10149758:10149878:10150880:10150979:10151635:10151879,	10150881	10150979	10150903	10150903	Frame_Shift_Del	C	-	p.G47fs
LIHC	TCGA-DD-A1EG-01	LRP6	ENST00000543091.1	chr12	12356136:12356334:12397195:12397589:12419614:12419703,	12397196	12397589	12397499	12397499	Frame_Shift_Del	C	-	p.G49fs
LIHC	TCGA-DD-A1EG-01	MANSC1	ENST00000396349.3,ENST00000535902.1	chr12	12482646:12483892:12491353:12491494:12496025:12496107,	12491354	12491494	12491398	12491398	Frame_Shift_Del	G	-	p.P107fs
LIHC	TCGA-DD-A1EG-01	RERG	ENST00000393736.3	chr12	15273998:15274053:15370362:15370537:15374128:15374202,15273998:15274053:15370362:15370537:15490310:15490404,	15370363	15370537	15370414	15370414	Frame_Shift_Del	T	-	p.S4fs
LIHC	TCGA-DD-A1EG-01	PTPRO	ENST00000348962.2,ENST00000543886.1,ENST00000281171.4	chr12	15652375:15652528:15654553:15654997:15656841:15657003,	15654554	15654997	15654569	15654569	Frame_Shift_Del	A	-	p.Q226fs
LIHC	TCGA-DD-A1EG-01	PTPRO	ENST00000348962.2,ENST00000543886.1,ENST00000281171.4	chr12	15652375:15652528:15654553:15654997:15656841:15657003,	15654554	15654997	15654595	15654595	Frame_Shift_Del	T	-	p.L235fs
LIHC	TCGA-DD-A1EG-01	MGST1	ENST00000543076.1	chr12	16500627:16500644:16510538:16510633:16520258:16520399,16507299:16507312:16510538:16510633:16516728:16516740,16507164:16507312:16510538:16510633:16536440:16536538,16507164:16507312:16510538:16510633:16520258:16520399,16507171:16507204:16510538:16510633:16516728:16516740,	16510539	16510633	16510600	16510600	Frame_Shift_Del	T	-	p.L63fs
LIHC	TCGA-DD-A1EG-01	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000535651.1,ENST00000433979.1	chr12	18491359:18491482:18496260:18496294:18499574:18499588,	18496261	18496294	18496290	18496290	Frame_Shift_Del	A	-	p.A475fs
LIHC	TCGA-DD-A1EG-01	PIK3C2G	ENST00000266497.5,ENST00000433979.1	chr12	18499722:18499770:18524113:18524245:18534699:18534814,	18524114	18524245	18524124	18524124	Frame_Shift_Del	C	-	p.P546fs
LIHC	TCGA-DD-A1EG-01	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000433979.1	chr12	18656214:18656351:18658225:18658395:18691089:18691246,	18658226	18658395	18658337	18658337	Frame_Shift_Del	T	-	p.F1048fs
LIHC	TCGA-DD-A1EG-01	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000433979.1	chr12	18699256:18699366:18715636:18715826:18716310:18716432,	18715637	18715826	18715742	18715742	Frame_Shift_Del	T	-	p.T1191fs
LIHC	TCGA-DD-A1EG-01	C2CD5	ENST00000333957.4	chr12	22606829:22606976:22609904:22610095:22622642:22622729,	22609905	22610095	22610047	22610047	Frame_Shift_Del	T	-	p.N861fs
LIHC	TCGA-DD-A1EG-01	C2CD5	ENST00000544930.1,ENST00000537643.1,ENST00000396028.2,ENST00000536386.1,ENST00000545552.1,ENST00000333957.4,ENST00000542676.1,ENST00000446597.1	chr12	22624900:22624999:22625219:22625281:22625677:22625741,	22625220	22625281	22625258	22625258	Frame_Shift_Del	T	-	p.I711fs
LIHC	TCGA-DD-A1EG-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26218163	26218163	Frame_Shift_Del	G	-	p.R279fs
LIHC	TCGA-DD-A1EG-01	BHLHE41	ENST00000242728.4	chr12	26276562:26276674:26277004:26277112:26277451:26277515,	26277005	26277112	26277064	26277064	Frame_Shift_Del	G	-	p.R59fs
LIHC	TCGA-DD-A1EG-01	TM7SF3	ENST00000343028.4,ENST00000545344.1	chr12	27127086:27127160:27128428:27128591:27129192:27129290,	27128429	27128591	27128545	27128545	Frame_Shift_Del	A	-	p.L445fs
LIHC	TCGA-DD-A1EG-01	STK38L	ENST00000545470.1,ENST00000539577.1,ENST00000389032.3	chr12	27462046:27462130:27465481:27465605:27467436:27467591,	27465482	27465605	27465519	27465519	Frame_Shift_Del	A	-	p.E144fs
LIHC	TCGA-DD-A1EG-01	PPFIBP1	ENST00000228425.6	chr12	27809548:27809663:27811748:27811781:27813816:27813878,	27811749	27811781	27811760	27811760	Frame_Shift_Del	A	-	p.K277fs
LIHC	TCGA-DD-A1EG-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31604927	31604927	Frame_Shift_Del	G	-	p.Q526fs
LIHC	TCGA-DD-A1EG-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32260229:32260478:32369180:32369393:32446927:32447080,	32369181	32369393	32369316	32369316	Frame_Shift_Del	A	-	p.K117fs
LIHC	TCGA-DD-A1EG-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000547733.1,ENST00000551264.1,ENST00000361961.3	chr12	39688225:39688319:39695281:39695481:39696766:39696937,	39695282	39695481	39695396	39695396	Frame_Shift_Del	C	-	p.G1607fs
LIHC	TCGA-DD-A1EG-01	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745735	39745735	Frame_Shift_Del	T	-	p.N506fs
LIHC	TCGA-DD-A1EG-01	SLC2A13	ENST00000380858.1	chr12	40422102:40422311:40441852:40442012:40499054:40499661,	40441853	40442012	40441958	40441958	Frame_Shift_Del	A	-	p.L204fs
LIHC	TCGA-DD-A1EG-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40631848:40631905:40634284:40634419:40637351:40637483,	40634285	40634419	40634397	40634397	Frame_Shift_Del	T	-	p.C228fs
LIHC	TCGA-DD-A1EG-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713819	40713819	Frame_Shift_Del	A	-	p.P1619fs
LIHC	TCGA-DD-A1EG-01	PPHLN1	ENST00000395568.2,ENST00000549190.1,ENST00000395580.3,ENST00000552761.1,ENST00000337898.6,ENST00000358314.7,ENST00000432191.2,ENST00000552202.1	chr12	42748962:42749024:42768664:42768876:42781257:42781324,42748962:42749024:42768664:42768876:42778741:42778798,	42768665	42768876	42768749	42768749	Frame_Shift_Del	T	-	p.T73fs
LIHC	TCGA-DD-A1EG-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148200	44148200	Frame_Shift_Del	T	-	p.K283fs
LIHC	TCGA-DD-A1EG-01	IRAK4	ENST00000431837.1,ENST00000550615.1	chr12	44152769:44152819:44161905:44162075:44164840:44164907,44152769:44152819:44161905:44162075:44165982:44166165,	44161906	44162075	44161921	44161921	Frame_Shift_Del	A	-	p.K3fs
LIHC	TCGA-DD-A1EG-01	TMEM117	ENST00000266534.3,ENST00000551577.1	chr12	44238666:44238731:44338012:44338145:44605072:44605170,44238666:44238731:44338012:44338145:44537327:44537427,	44338013	44338145	44338143	44338143	Frame_Shift_Del	G	-	p.M136fs
LIHC	TCGA-DD-A1EG-01	NELL2	ENST00000547751.1,ENST00000452445.2,ENST00000550313.1,ENST00000333837.4,ENST00000551601.1,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000429094.2	chr12	45059266:45059392:45097508:45097637:45105074:45105177,	45097509	45097637	45097583	45097583	Frame_Shift_Del	T	-	p.N415fs
LIHC	TCGA-DD-A1EG-01	ANO6	ENST00000426898.2,ENST00000423947.3,ENST00000435642.1,ENST00000425752.2,ENST00000320560.8,ENST00000441606.2	chr12	45781943:45782086:45784203:45784281:45795577:45795803,	45784204	45784281	45784232	45784232	Frame_Shift_Del	G	-	p.W446fs
LIHC	TCGA-DD-A1EG-01	ANO6	ENST00000423947.3,ENST00000435642.1,ENST00000425752.2,ENST00000320560.8,ENST00000441606.2	chr12	45810481:45810687:45814853:45815056:45816739:45816845,	45814854	45815056	45814929	45814929	Frame_Shift_Del	G	-	p.G765fs
LIHC	TCGA-DD-A1EG-01	ANO6	ENST00000423947.3,ENST00000320560.8,ENST00000441606.2	chr12	45814853:45815056:45816739:45816845:45822887:45823169,	45816740	45816845	45816770	45816770	Frame_Shift_Del	C	-	p.H817fs
LIHC	TCGA-DD-A1EG-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230579	46230579	Frame_Shift_Del	G	-	p.L276fs
LIHC	TCGA-DD-A1EG-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321150	46321150	Frame_Shift_Del	T	-	p.K463fs
LIHC	TCGA-DD-A1EG-01	RPAP3	ENST00000432584.3	chr12	48091379:48091502:48095246:48095387:48099734:48099769,	48095247	48095387	48095283	48095283	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-DD-A1EG-01	RPAP3	ENST00000432584.3	chr12	48091379:48091502:48095246:48095387:48099734:48099769,	48095247	48095387	48095293	48095293	Frame_Shift_Del	T	-	p.N83fs
LIHC	TCGA-DD-A1EG-01	RAPGEF3	ENST00000171000.4,ENST00000479866.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2	chr12	48134697:48134823:48135287:48135385:48137312:48137459,	48135288	48135385	48135307	48135307	Frame_Shift_Del	G	-	p.P593fs
LIHC	TCGA-DD-A1EG-01	RAPGEF3	ENST00000171000.4,ENST00000479866.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2	chr12	48134697:48134823:48135287:48135385:48137312:48137459,	48135288	48135385	48135336	48135336	Frame_Shift_Del	C	-	p.G583fs
LIHC	TCGA-DD-A1EG-01	RAPGEF3	ENST00000171000.4,ENST00000479866.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000482843.1,ENST00000549151.1,ENST00000449771.2	chr12	48135287:48135385:48137312:48137459:48137769:48137851,	48137313	48137459	48137344	48137344	Frame_Shift_Del	C	-	p.G556fs
LIHC	TCGA-DD-A1EG-01	HDAC7	ENST00000445237.2,ENST00000380610.4,ENST00000430670.1,ENST00000450805.1,ENST00000427332.2,ENST00000354334.3,ENST00000434070.1,ENST00000417107.1,ENST00000080059.7	chr12	48192422:48192435:48192567:48192755:48213549:48213568,48192422:48192435:48192567:48192755:48196006:48196057,	48192568	48192755	48192633	48192633	Frame_Shift_Del	G	-	p.Q65fs
LIHC	TCGA-DD-A1EG-01	TMEM106C	ENST00000547682.1,ENST00000550552.1,ENST00000256686.6,ENST00000449758.2,ENST00000550146.1,ENST00000548640.1	chr12	48359871:48360012:48360465:48360515:48360990:48361044,48359871:48359955:48360465:48360515:48360990:48361044,	48360466	48360515	48360502	48360502	Frame_Shift_Del	T	-	p.F197fs
LIHC	TCGA-DD-A1EG-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000359794.5,ENST00000546964.1,ENST00000340802.6,ENST00000550802.1,ENST00000312352.7,ENST00000395233.2,ENST00000551804.1	chr12	48535755:48535849:48536564:48536729:48537535:48537597,	48536565	48536729	48536634	48536634	Frame_Shift_Del	G	-	p.G646fs
LIHC	TCGA-DD-A1EG-01	ADCY6	ENST00000552099.1	chr12	49166290:49166326:49167251:49167881:49168184:49168289,	49167252	49167881	49167751	49167751	Frame_Shift_Del	C	-	p.G805fs
LIHC	TCGA-DD-A1EG-01	ADCY6	ENST00000307885.4	chr12	49167251:49167430:49167722:49167881:49168184:49168289,	49167723	49167881	49167751	49167751	Frame_Shift_Del	C	-	p.G805fs
LIHC	TCGA-DD-A1EG-01	ADCY6	ENST00000550422.1	chr12	49171890:49172040:49176353:49177221:49182688:49182820,	49176354	49177221	49177189	49177189	Frame_Shift_Del	G	-	p.P10fs
LIHC	TCGA-DD-A1EG-01	KMT2D	ENST00000301067.7	chr12	49416372:49416658:49418360:49418491:49418592:49418729,	49418361	49418491	49418482	49418482	Frame_Shift_Del	C	-	p.V5311fs
LIHC	TCGA-DD-A1EG-01	KMT2D	ENST00000301067.7	chr12	49447760:49447923:49448089:49448199:49448310:49448534,	49448090	49448199	49448147	49448147	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-DD-A1EG-01	FAM186B	ENST00000532262.1	chr12	49976668:49976892:49981344:49981535:49982236:49982406,49978060:49978397:49981344:49981535:49982236:49982406,	49981345	49981535	49981464	49981464	Frame_Shift_Del	T	-	p.K869fs
LIHC	TCGA-DD-A1EG-01	FMNL3	ENST00000293590.5,ENST00000352151.5,ENST00000549137.1,ENST00000550488.1,ENST00000335154.5	chr12	50043473:50043708:50044458:50044661:50044950:50045075,	50044459	50044661	50044609	50044609	Frame_Shift_Del	G	-	p.P617fs
LIHC	TCGA-DD-A1EG-01	GPD1	ENST00000301149.3,ENST00000548814.1	chr12	50500587:50500700:50501349:50501583:50501806:50501891,	50501350	50501583	50501388	50501388	Frame_Shift_Del	G	-	p.L217fs
LIHC	TCGA-DD-A1EG-01	SLC11A2	ENST00000262052.5,ENST00000548193.1,ENST00000547688.1,ENST00000262051.7,ENST00000541174.2,ENST00000545993.2,ENST00000394904.3,ENST00000546636.1,ENST00000547198.1,ENST00000547732.1,ENST00000546743.1	chr12	51398570:51398690:51399093:51399219:51402258:51402327,	51399094	51399219	51399202	51399202	Frame_Shift_Del	A	-	p.F96fs
LIHC	TCGA-DD-A1EG-01	LETMD1	ENST00000550755.1,ENST00000550929.1,ENST00000551261.1,ENST00000262055.4,ENST00000551477.1	chr12	51442860:51442968:51447560:51447643:51449932:51450028,51442860:51442968:51447560:51447643:51449926:51450004,51442860:51442968:51447560:51447643:51449617:51449631,51445874:51445990:51447560:51447643:51449617:51449631,	51447561	51447643	51447614	51447614	Frame_Shift_Del	T	-	p.P161fs
LIHC	TCGA-DD-A1EG-01	LETMD1	ENST00000549340.1	chr12	51442860:51442968:51447594:51447643:51449617:51449631,	51447595	51447643	51447614	51447614	Frame_Shift_Del	T	-	p.P161fs
LIHC	TCGA-DD-A1EG-01	TFCP2	ENST00000546822.1,ENST00000549867.1,ENST00000307660.4,ENST00000548115.1,ENST00000257915.5,ENST00000548108.1	chr12	51489805:51489823:51492558:51492701:51493437:51493525,	51492559	51492701	51492696	51492696	Frame_Shift_Del	G	-	p.H377fs
LIHC	TCGA-DD-A1EG-01	TFCP2	ENST00000549867.1,ENST00000257915.5,ENST00000548108.1	chr12	51501018:51501129:51502903:51503056:51504659:51504766,	51502904	51503056	51503002	51503002	Frame_Shift_Del	C	-	p.V207fs
LIHC	TCGA-DD-A1EG-01	SCN8A	ENST00000550891.1,ENST00000355133.3,ENST00000551216.1,ENST00000354534.6,ENST00000545061.1	chr12	52094927:52094991:52096556:52096698:52099200:52099407,	52096557	52096698	52096654	52096654	Frame_Shift_Del	T	-	p.F364fs
LIHC	TCGA-DD-A1EG-01	KRT7	ENST00000331817.5	chr12	52636868:52636921:52639195:52639416:52641960:52641995,	52639196	52639416	52639299	52639299	Frame_Shift_Del	G	-	p.R363fs
LIHC	TCGA-DD-A1EG-01	KRT7	ENST00000549127.1	chr12	52636868:52636921:52639273:52639416:52641960:52641995,	52639274	52639416	52639299	52639299	Frame_Shift_Del	G	-	p.R363fs
LIHC	TCGA-DD-A1EG-01	EIF4B	ENST00000416762.3,ENST00000262056.9	chr12	53428395:53428508:53431192:53431406:53432139:53432195,53428429:53428493:53431192:53431406:53432139:53432195,	53431193	53431406	53431226	53431226	Frame_Shift_Del	A	-	p.E447fs
LIHC	TCGA-DD-A1EG-01	SPRYD3	ENST00000547837.1,ENST00000301463.4	chr12	53460097:53460270:53460356:53460476:53461431:53461489,	53460357	53460476	53460381	53460381	Frame_Shift_Del	G	-	p.R333fs
LIHC	TCGA-DD-A1EG-01	SPRYD3	ENST00000547837.1,ENST00000550252.1,ENST00000301463.4	chr12	53467069:53467255:53468432:53468568:53468878:53469003,	53468433	53468568	53468443	53468443	Frame_Shift_Del	T	-	p.N166fs
LIHC	TCGA-DD-A1EG-01	ITGB7	ENST00000550743.2,ENST00000338737.4	chr12	53586113:53586322:53587491:53587685:53587981:53588042,	53587492	53587685	53587495	53587495	Frame_Shift_Del	C	-	p.C500fs
LIHC	TCGA-DD-A1EG-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000549572.1,ENST00000551741.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000456234.2,ENST00000552817.1	chr12	53898484:53898599:53898918:53899046:53899432:53899470,	53898919	53899046	53898933	53898933	Frame_Shift_Del	A	-	p.K211fs
LIHC	TCGA-DD-A1EG-01	ATF7	ENST00000588078.1,ENST00000548446.2,ENST00000591397.1,ENST00000456903.4,ENST00000420353.2,ENST00000548118.2,ENST00000328463.7,ENST00000415113.1	chr12	53937113:53937232:53946324:53946421:53994736:53994805,	53946325	53946421	53946349	53946349	Frame_Shift_Del	G	-	p.R41fs
LIHC	TCGA-DD-A1EG-01	ZNF385A	ENST00000552382.1	chr12	54767756:54767919:54769627:54769738:54778211:54778244,54767756:54767919:54769627:54769738:54772849:54772973,	54769628	54769738	54769700	54769700	Frame_Shift_Del	A	-	p.F42fs
LIHC	TCGA-DD-A1EG-01	ITGA5	ENST00000293379.4	chr12	54797928:54798030:54798213:54798259:54798486:54798678,	54798214	54798259	54798240	54798240	Frame_Shift_Del	A	-	p.F479fs
LIHC	TCGA-DD-A1EG-01	NCKAP1L	ENST00000548221.1,ENST00000293373.6,ENST00000545638.2	chr12	54917608:54917740:54920311:54920530:54922030:54922161,	54920312	54920530	54920496	54920496	Frame_Shift_Del	G	-	p.G781fs
LIHC	TCGA-DD-A1EG-01	CD63	ENST00000552754.1	chr12	56120673:56120748:56120934:56121054:56122059:56122133,	56120935	56121054	56121051	56121051	Frame_Shift_Del	C	-	p.A47fs
LIHC	TCGA-DD-A1EG-01	CD63	ENST00000420846.3,ENST00000552692.1,ENST00000546457.1,ENST00000551173.1,ENST00000552164.1,ENST00000549117.1,ENST00000257857.4	chr12	56120673:56120748:56120934:56121123:56122059:56122133,	56120935	56121123	56121051	56121051	Frame_Shift_Del	C	-	p.A47fs
LIHC	TCGA-DD-A1EG-01	CD63	ENST00000420846.3,ENST00000550050.1,ENST00000257857.4	chr12	56120934:56121123:56122059:56122136:56123065:56123177,56120934:56121123:56122059:56122136:56122736:56122784,	56122060	56122136	56122062	56122062	Frame_Shift_Del	A	-	p.C22fs
LIHC	TCGA-DD-A1EG-01	ORMDL2	ENST00000552672.1	chr12	56211827:56211896:56212874:56212957:56213125:56213204,	56212875	56212957	56212903	56212903	Frame_Shift_Del	C	-	p.I40fs
LIHC	TCGA-DD-A1EG-01	MMP19	ENST00000547685.1,ENST00000552872.1	chr12	56231626:56231791:56232283:56232518:56233279:56233525,	56232284	56232518	56232455	56232455	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A1EG-01	MMP19	ENST00000548629.1,ENST00000322569.4	chr12	56231626:56231791:56232389:56232518:56233279:56233525,	56232390	56232518	56232455	56232455	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A1EG-01	MMP19	ENST00000548629.1,ENST00000322569.4,ENST00000552872.1	chr12	56232389:56232518:56233279:56233525:56236136:56236222,56232389:56232518:56233279:56233525:56234450:56234597,	56233280	56233525	56233312	56233312	Frame_Shift_Del	G	-	p.P245fs
LIHC	TCGA-DD-A1EG-01	MMP19	ENST00000548629.1,ENST00000322569.4,ENST00000552872.1	chr12	56232389:56232518:56233279:56233525:56236136:56236222,56232389:56232518:56233279:56233525:56234450:56234597,	56233280	56233525	56233328	56233328	Frame_Shift_Del	G	-	p.H240fs
LIHC	TCGA-DD-A1EG-01	DGKA	ENST00000551296.1,ENST00000549079.2,ENST00000402956.3,ENST00000552478.1,ENST00000331886.5,ENST00000394147.1,ENST00000551156.1	chr12	56346124:56346215:56346517:56346716:56346823:56346944,	56346518	56346716	56346701	56346701	Frame_Shift_Del	A	-	p.K643fs
LIHC	TCGA-DD-A1EG-01	SUOX	ENST00000550478.1	chr12	56395997:56396055:56396387:56396504:56397401:56397440,	56396388	56396504	56396388	56396388	Frame_Shift_Del	C	-	p.P38fs
LIHC	TCGA-DD-A1EG-01	SUOX	ENST00000394109.3,ENST00000552258.1,ENST00000548274.1,ENST00000394115.2,ENST00000266971.3,ENST00000546833.1,ENST00000356124.4,ENST00000550065.1,ENST00000551841.2	chr12	56395997:56396055:56396326:56396504:56397401:56397440,	56396327	56396504	56396388	56396388	Frame_Shift_Del	C	-	p.P38fs
LIHC	TCGA-DD-A1EG-01	SUOX	ENST00000550478.1	chr12	56395997:56396055:56396387:56396504:56397401:56397440,	56396388	56396504	56396455	56396455	Frame_Shift_Del	C	-	p.T60fs
LIHC	TCGA-DD-A1EG-01	SUOX	ENST00000394109.3,ENST00000552258.1,ENST00000548274.1,ENST00000394115.2,ENST00000266971.3,ENST00000546833.1,ENST00000356124.4,ENST00000550065.1,ENST00000551841.2	chr12	56395997:56396055:56396326:56396504:56397401:56397440,	56396327	56396504	56396455	56396455	Frame_Shift_Del	C	-	p.T60fs
LIHC	TCGA-DD-A1EG-01	IKZF4	ENST00000262032.5,ENST00000547167.1	chr12	56415214:56415364:56417454:56417548:56418837:56418942,	56417455	56417548	56417476	56417476	Frame_Shift_Del	G	-	p.G37fs
LIHC	TCGA-DD-A1EG-01	ESYT1	ENST00000394048.5,ENST00000541590.1,ENST00000267113.4,ENST00000547667.1	chr12	56531125:56531157:56531282:56531459:56531615:56531698,	56531283	56531459	56531342	56531342	Frame_Shift_Del	G	-	p.L666fs
LIHC	TCGA-DD-A1EG-01	CS	ENST00000548849.1	chr12	56669947:56669979:56676643:56676775:56677575:56677605,56676203:56676392:56676643:56676775:56679699:56679807,	56676644	56676775	56676682	56676682	Frame_Shift_Del	A	-	p.W55fs
LIHC	TCGA-DD-A1EG-01	STAT2	ENST00000314128.4,ENST00000556539.1,ENST00000557235.1	chr12	56742781:56742843:56742946:56743045:56743209:56743283,	56742947	56743045	56742966	56742966	Frame_Shift_Del	A	-	p.L475fs
LIHC	TCGA-DD-A1EG-01	RBMS2	ENST00000262031.5,ENST00000552916.1,ENST00000550726.1,ENST00000552247.2,ENST00000542360.1	chr12	56982077:56982158:56982715:56982802:56982923:56983287,	56982716	56982802	56982778	56982778	Frame_Shift_Del	T	-	p.S402fs
LIHC	TCGA-DD-A1EG-01	BAZ2A	ENST00000547650.1	chr12	57000416:57000517:57003519:57003721:57003897:57003999,	57003520	57003721	57003541	57003541	Frame_Shift_Del	G	-	p.L661fs
LIHC	TCGA-DD-A1EG-01	BAZ2A	ENST00000551812.1,ENST00000549884.1,ENST00000379441.3,ENST00000179765.5	chr12	57000416:57000517:57003519:57003730:57003897:57003999,	57003520	57003730	57003541	57003541	Frame_Shift_Del	G	-	p.L661fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000550952.1	chr12	57108418:57108471:57109654:57109990:57113320:57113380,	57109655	57109990	57109927	57109927	Frame_Shift_Del	G	-	p.P1797fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57109927	57109927	Frame_Shift_Del	G	-	p.P1797fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112829	57112829	Frame_Shift_Del	A	-	p.S829fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57113608	57113608	Frame_Shift_Del	T	-	p.N569fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57113608	57113608	Frame_Shift_Del	T	-	p.N569fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114922	57114922	Frame_Shift_Del	G	-	p.P131fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114922	57114922	Frame_Shift_Del	G	-	p.P131fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57115009	57115009	Frame_Shift_Del	A	-	p.F102fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57115009	57115009	Frame_Shift_Del	A	-	p.F102fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57115024	57115024	Frame_Shift_Del	G	-	p.P97fs
LIHC	TCGA-DD-A1EG-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57115024	57115024	Frame_Shift_Del	G	-	p.P97fs
LIHC	TCGA-DD-A1EG-01	HSD17B6	ENST00000555805.1,ENST00000554643.1,ENST00000554150.1,ENST00000555159.1,ENST00000322165.1	chr12	57175873:57176016:57178636:57178800:57180908:57181129,	57178637	57178800	57178798	57178798	Frame_Shift_Del	C	-	p.A245fs
LIHC	TCGA-DD-A1EG-01	LRP1	ENST00000243077.3,ENST00000556356.1	chr12	57603811:57603952:57604089:57604263:57604500:57604662,	57604090	57604263	57604236	57604236	Frame_Shift_Del	G	-	p.G4244fs
LIHC	TCGA-DD-A1EG-01	ARHGAP9	ENST00000548148.1,ENST00000546200.1	chr12	57870159:57870237:57870372:57870746:57870938:57871052,	57870373	57870746	57870656	57870656	Frame_Shift_Del	G	-	p.H392fs
LIHC	TCGA-DD-A1EG-01	ARHGAP9	ENST00000548139.1,ENST00000430041.2,ENST00000356411.2,ENST00000393791.3,ENST00000550288.1,ENST00000393797.2,ENST00000424809.2	chr12	57870372:57870434:57870653:57870746:57870938:57871052,	57870654	57870746	57870656	57870656	Frame_Shift_Del	G	-	p.H392fs
LIHC	TCGA-DD-A1EG-01	ARHGAP9	ENST00000548148.1,ENST00000546200.1	chr12	57870159:57870237:57870372:57870746:57870938:57871052,	57870373	57870746	57870676	57870676	Frame_Shift_Del	G	-	p.P385fs
LIHC	TCGA-DD-A1EG-01	ARHGAP9	ENST00000548139.1,ENST00000430041.2,ENST00000356411.2,ENST00000393791.3,ENST00000550288.1,ENST00000393797.2,ENST00000424809.2	chr12	57870372:57870434:57870653:57870746:57870938:57871052,	57870654	57870746	57870676	57870676	Frame_Shift_Del	G	-	p.P385fs
LIHC	TCGA-DD-A1EG-01	MARS	ENST00000546971.1,ENST00000315473.5,ENST00000262027.5,ENST00000545888.2	chr12	57905790:57905886:57906018:57906136:57906533:57906747,	57906019	57906136	57906039	57906039	Frame_Shift_Del	G	-	p.M552fs
LIHC	TCGA-DD-A1EG-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.P733fs
LIHC	TCGA-DD-A1EG-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921929:57922343:57922448:57922501:57922728:57922792,	57922449	57922501	57922482	57922482	Frame_Shift_Del	G	-	p.G952fs
LIHC	TCGA-DD-A1EG-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921929:57922343:57922448:57922501:57922728:57922792,	57922449	57922501	57922493	57922493	Frame_Shift_Del	A	-	p.R955fs
LIHC	TCGA-DD-A1EG-01	DCTN2	ENST00000434715.3,ENST00000550750.1,ENST00000551400.1,ENST00000550086.1,ENST00000550201.1,ENST00000543672.1,ENST00000546965.1,ENST00000548249.1,ENST00000550954.1,ENST00000549394.1,ENST00000547345.1,ENST00000548949.1,ENST00000546670.1,ENST00000537439.1	chr12	57928842:57928937:57929266:57929328:57929531:57929628,	57929267	57929328	57929297	57929297	Frame_Shift_Del	C	-	p.R78fs
LIHC	TCGA-DD-A1EG-01	ARHGEF25	ENST00000333972.7,ENST00000286494.4,ENST00000471370.1	chr12	58009294:58009495:58009619:58009800:58010066:58010278,	58009620	58009800	58009786	58009786	Frame_Shift_Del	G	-	p.R469fs
LIHC	TCGA-DD-A1EG-01	TSPAN31	ENST00000546993.1,ENST00000257910.3,ENST00000553221.1,ENST00000552816.1,ENST00000548167.1	chr12	58139527:58139695:58139958:58140039:58140371:58140503,	58139959	58140039	58139995	58139995	Frame_Shift_Del	T	-	p.F90fs
LIHC	TCGA-DD-A1EG-01	LRIG3	ENST00000379141.4,ENST00000433272.2,ENST00000320743.3	chr12	59281570:59281714:59282110:59282254:59282600:59282744,	59282111	59282254	59282168	59282168	Frame_Shift_Del	T	-	p.N297fs
LIHC	TCGA-DD-A1EG-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62943447:62943610:62946660:62946954:62949773:62949972,	62946661	62946954	62946764	62946764	Frame_Shift_Del	T	-	p.V1008fs
LIHC	TCGA-DD-A1EG-01	DPY19L2	ENST00000324472.4,ENST00000439061.2,ENST00000413230.2	chr12	63954130:63954442:63963003:63963129:63964537:63964637,	63963004	63963129	63963081	63963081	Frame_Shift_Del	T	-	p.K683fs
LIHC	TCGA-DD-A1EG-01	DPY19L2	ENST00000324472.4,ENST00000413230.2	chr12	63964537:63964637:63974441:63974616:63976185:63976305,	63974442	63974616	63974471	63974471	Frame_Shift_Del	A	-	p.L624fs
LIHC	TCGA-DD-A1EG-01	DPY19L2	ENST00000324472.4,ENST00000306389.7	chr12	64038182:64038276:64041024:64041145:64055123:64055261,	64041025	64041145	64041034	64041034	Frame_Shift_Del	T	-	p.S234fs
LIHC	TCGA-DD-A1EG-01	XPOT	ENST00000332707.5	chr12	64815014:64815251:64816784:64816823:64816961:64817024,	64816785	64816823	64816807	64816807	Frame_Shift_Del	A	-	p.Q368fs
LIHC	TCGA-DD-A1EG-01	TBK1	ENST00000540417.1,ENST00000539810.1,ENST00000331710.5,ENST00000538890.1	chr12	64849696:64849737:64853968:64854109:64858113:64858179,	64853969	64854109	64854059	64854059	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A1EG-01	TBK1	ENST00000331710.5	chr12	64879705:64879797:64882266:64882368:64883820:64883899,	64882267	64882368	64882353	64882353	Frame_Shift_Del	A	-	p.E476fs
LIHC	TCGA-DD-A1EG-01	WIF1	ENST00000286574.4,ENST00000543094.1	chr12	65449876:65449906:65456260:65456356:65460420:65460439,	65456261	65456356	65456304	65456304	Frame_Shift_Del	T	-	p.K261fs
LIHC	TCGA-DD-A1EG-01	GRIP1	ENST00000540433.1,ENST00000538211.1,ENST00000398016.3	chr12	66839175:66839288:66849188:66849344:66856703:66856873,	66849189	66849344	66849205	66849205	Frame_Shift_Del	T	-	p.K446fs
LIHC	TCGA-DD-A1EG-01	GRIP1	ENST00000543172.1	chr12	66839175:66839288:66849188:66849341:66856703:66856873,	66849189	66849341	66849205	66849205	Frame_Shift_Del	T	-	p.K446fs
LIHC	TCGA-DD-A1EG-01	MDM1	ENST00000303145.7,ENST00000540418.1,ENST00000411698.2	chr12	68690702:68690762:68696399:68696652:68707222:68707332,	68696400	68696652	68696495	68696495	Frame_Shift_Del	G	-	p.P626fs
LIHC	TCGA-DD-A1EG-01	MDM1	ENST00000303145.7,ENST00000541686.1,ENST00000545724.1	chr12	68719220:68719355:68720436:68720801:68724886:68725001,	68720437	68720801	68720450	68720450	Frame_Shift_Del	T	-	p.N162fs
LIHC	TCGA-DD-A1EG-01	NUP107	ENST00000535718.1,ENST00000229179.4,ENST00000539906.1,ENST00000378905.2	chr12	69090630:69090702:69094505:69094633:69096515:69096564,	69094506	69094633	69094562	69094562	Frame_Shift_Del	A	-	p.S203fs
LIHC	TCGA-DD-A1EG-01	MDM2	ENST00000350057.5,ENST00000462284.1,ENST00000539479.1,ENST00000393415.3,ENST00000311420.9,ENST00000393417.3,ENST00000393416.2	chr12	69218142:69218210:69218334:69218431:69222550:69222711,	69218335	69218431	69218362	69218362	Frame_Shift_Del	A	-	p.K152fs
LIHC	TCGA-DD-A1EG-01	CCT2	ENST00000299300.6,ENST00000544368.2,ENST00000550010.1,ENST00000543146.2,ENST00000548787.1	chr12	69983358:69983467:69985838:69985939:69986755:69986883,	69985839	69985939	69985853	69985853	Frame_Shift_Del	A	-	p.K176fs
LIHC	TCGA-DD-A1EG-01	BEST3	ENST00000548658.1,ENST00000331471.4,ENST00000330891.5,ENST00000393365.1	chr12	70088149:70088244:70091426:70091593:70092984:70093065,	70091427	70091593	70091528	70091528	Frame_Shift_Del	A	-	p.F17fs
LIHC	TCGA-DD-A1EG-01	RAB3IP	ENST00000378809.4,ENST00000362025.5,ENST00000325555.9,ENST00000552199.1,ENST00000547591.1,ENST00000417413.3,ENST00000247833.7,ENST00000550536.1,ENST00000483530.2,ENST00000378815.6	chr12	70149350:70149439:70150184:70150443:70178499:70178595,	70150185	70150443	70150285	70150285	Frame_Shift_Del	T	-	p.F134fs
LIHC	TCGA-DD-A1EG-01	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70938336:70938443:70946556:70946800:70948939:70949089,	70946557	70946800	70946742	70946742	Frame_Shift_Del	C	-	p.R1734fs
LIHC	TCGA-DD-A1EG-01	TSPAN8	ENST00000247829.3,ENST00000552128.1,ENST00000546561.1,ENST00000393330.2	chr12	71523110:71523194:71526472:71526604:71531732:71531840,	71526473	71526604	71526588	71526588	Frame_Shift_Del	A	-	p.L154fs
LIHC	TCGA-DD-A1EG-01	LGR5	ENST00000540815.2,ENST00000536515.1,ENST00000266674.5,ENST00000550851.1	chr12	71898393:71898465:71918185:71918257:71928894:71928966,	71918186	71918257	71918195	71918195	Frame_Shift_Del	G	-	p.A98fs
LIHC	TCGA-DD-A1EG-01	LGR5	ENST00000540815.2,ENST00000266674.5,ENST00000550851.1	chr12	71928894:71928966:71946852:71947068:71950398:71950470,	71946853	71947068	71946912	71946912	Frame_Shift_Del	C	-	p.S163fs
LIHC	TCGA-DD-A1EG-01	LGR5	ENST00000540815.2,ENST00000266674.5,ENST00000550851.1	chr12	71928894:71928966:71946852:71947068:71950398:71950470,	71946853	71947068	71947005	71947005	Frame_Shift_Del	C	-	p.A194fs
LIHC	TCGA-DD-A1EG-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72013094:72013189:72013705:72013904:72013989:72014095,	72013706	72013904	72013758	72013758	Frame_Shift_Del	T	-	p.N1666fs
LIHC	TCGA-DD-A1EG-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038687	72038687	Frame_Shift_Del	T	-	p.T417fs
LIHC	TCGA-DD-A1EG-01	CAPS2	ENST00000409799.1,ENST00000409004.1	chr12	75692650:75692746:75693616:75693691:75698536:75698656,75692466:75692560:75693616:75693691:75698536:75698656,	75693617	75693691	75693662	75693662	Frame_Shift_Del	T	-	p.N57fs
LIHC	TCGA-DD-A1EG-01	GLIPR1L2	ENST00000378692.3,ENST00000320460.4,ENST00000441218.1,ENST00000550916.1	chr12	75804213:75804459:75807377:75807481:75816683:75816712,	75807378	75807481	75807428	75807428	Frame_Shift_Del	A	-	p.S177fs
LIHC	TCGA-DD-A1EG-01	NAP1L1	ENST00000550934.1,ENST00000431879.3	chr12	76453600:76453658:76453917:76454059:76467982:76468019,76449904:76449941:76453917:76454059:76461150:76461174,	76453918	76454059	76453924	76453924	Frame_Shift_Del	A	-	p.F114fs
LIHC	TCGA-DD-A1EG-01	ZDHHC17	ENST00000334822.5,ENST00000550876.1,ENST00000426126.2,ENST00000552453.1	chr12	77209677:77209799:77216185:77216311:77220687:77220694,	77216186	77216311	77216218	77216218	Frame_Shift_Del	A	-	p.R268fs
LIHC	TCGA-DD-A1EG-01	ACSS3	ENST00000548324.1,ENST00000261206.3,ENST00000548058.1	chr12	81545779:81545875:81568566:81568718:81593119:81593223,	81568567	81568718	81568680	81568680	Frame_Shift_Del	C	-	p.D404fs
LIHC	TCGA-DD-A1EG-01	TMTC2	ENST00000321196.3,ENST00000548305.1	chr12	83081259:83081448:83250788:83251359:83289596:83290425,	83250789	83251359	83251082	83251082	Frame_Shift_Del	A	-	p.H120fs
LIHC	TCGA-DD-A1EG-01	SLC6A15	ENST00000450363.3,ENST00000266682.5	chr12	85279689:85279847:85285610:85286087:85306301:85306484,	85285611	85286087	85285872	85285872	Frame_Shift_Del	T	-	p.R10fs
LIHC	TCGA-DD-A1EG-01	TSPAN19	ENST00000552392.1	chr12	85417103:85417178:85421676:85421801:85423496:85423569,85418429:85418550:85421676:85421801:85423496:85423569,	85421677	85421801	85421730	85421730	Frame_Shift_Del	A	-	p.C71fs
LIHC	TCGA-DD-A1EG-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85441024:85441248:85445954:85446029:85449324:85449385,	85445955	85446029	85446006	85446006	Frame_Shift_Del	A	-	p.K244fs
LIHC	TCGA-DD-A1EG-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450835	85450835	Frame_Shift_Del	T	-	p.I755fs
LIHC	TCGA-DD-A1EG-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454712	88454712	Frame_Shift_Del	T	-	p.K2139fs
LIHC	TCGA-DD-A1EG-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454732	88454732	Frame_Shift_Del	T	-	p.T2133fs
LIHC	TCGA-DD-A1EG-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88465070:88465226:88465557:88465703:88470998:88471121,	88465558	88465703	88465663	88465663	Frame_Shift_Del	T	-	p.K1917fs
LIHC	TCGA-DD-A1EG-01	TMTC3	ENST00000547034.1,ENST00000266712.6	chr12	88536083:88536264:88542064:88542281:88548064:88548101,88536083:88536264:88542064:88542281:88547067:88547286,	88542065	88542281	88542190	88542190	Frame_Shift_Del	T	-	p.V33fs
LIHC	TCGA-DD-A1EG-01	TMTC3	ENST00000547034.1,ENST00000266712.6	chr12	88536083:88536264:88542064:88542281:88548064:88548101,88536083:88536264:88542064:88542281:88547067:88547286,	88542065	88542281	88542268	88542268	Frame_Shift_Del	C	-	p.T59fs
LIHC	TCGA-DD-A1EG-01	ATP2B1	ENST00000359142.3,ENST00000261173.2,ENST00000428670.3,ENST00000393164.2,ENST00000348959.3	chr12	90013775:90014017:90015325:90015568:90017959:90018174,	90015326	90015568	90015381	90015381	Frame_Shift_Del	A	-	p.L511fs
LIHC	TCGA-DD-A1EG-01	DCN	ENST00000420120.2,ENST00000228329.5	chr12	91546872:91546966:91550851:91550965:91552072:91552286,91546872:91546966:91550851:91550965:91572118:91572178,	91550852	91550965	91550926	91550926	Frame_Shift_Del	T	-	p.N193fs
LIHC	TCGA-DD-A1EG-01	PLEKHG7	ENST00000344636.3	chr12	93147865:93148040:93149600:93149716:93150073:93150167,	93149601	93149716	93149640	93149640	Frame_Shift_Del	A	-	p.Q177fs
LIHC	TCGA-DD-A1EG-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93247690:93247730:93251050:93251116:93251206:93251261,	93251051	93251116	93251108	93251108	Frame_Shift_Del	T	-	p.K103fs
LIHC	TCGA-DD-A1EG-01	FGD6	ENST00000343958.4,ENST00000451107.3	chr12	95478273:95478422:95479555:95479684:95483344:95483472,	95479556	95479684	95479587	95479587	Frame_Shift_Del	T	-	p.N1359fs
LIHC	TCGA-DD-A1EG-01	FGD6	ENST00000551521.1,ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95498782:95498862:95500729:95500813:95501338:95501407,	95500730	95500813	95500758	95500758	Frame_Shift_Del	T	-	p.N1131fs
LIHC	TCGA-DD-A1EG-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603257	95603257	Frame_Shift_Del	G	-	p.P601fs
LIHC	TCGA-DD-A1EG-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95604662	95604662	Frame_Shift_Del	A	-	p.L133fs
LIHC	TCGA-DD-A1EG-01	NTN4	ENST00000553059.1	chr12	96131866:96131922:96180716:96181246:96184889:96184930,96131866:96131922:96180716:96181246:96184032:96184087,	96180717	96181246	96180860	96180860	Frame_Shift_Del	G	-	p.Q148fs
LIHC	TCGA-DD-A1EG-01	CCDC38	ENST00000344280.3	chr12	96284609:96284708:96288766:96288924:96292162:96292243,	96288767	96288924	96288803	96288803	Frame_Shift_Del	T	-	p.S246fs
LIHC	TCGA-DD-A1EG-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.K149fs
LIHC	TCGA-DD-A1EG-01	NEDD1	ENST00000411739.2	chr12	97301381:97301402:97311398:97311515:97313762:97313896,97306500:97306595:97311398:97311515:97313762:97313896,97301479:97301634:97311398:97311515:97313762:97313896,	97311399	97311515	97311485	97311485	Frame_Shift_Del	A	-	p.L106fs
LIHC	TCGA-DD-A1EG-01	TMPO	ENST00000393053.2	chr12	98938728:98938839:98940136:98940225:98941350:98941479,98931252:98931350:98940136:98940225:98941350:98941479,	98940137	98940225	98940144	98940144	Frame_Shift_Del	A	-	p.E333fs
LIHC	TCGA-DD-A1EG-01	APAF1	ENST00000546491.1,ENST00000550527.1,ENST00000551964.1	chr12	99093273:99093347:99097148:99097277:99100262:99100388,	99097149	99097277	99097261	99097261	Frame_Shift_Del	C	-	p.S849fs
LIHC	TCGA-DD-A1EG-01	APAF1	ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000552929.1,ENST00000551964.1,ENST00000357310.1	chr12	99117467:99117542:99119192:99119318:99120950:99121094,	99119193	99119318	99119233	99119233	Frame_Shift_Del	G	-	p.R1081fs
LIHC	TCGA-DD-A1EG-01	ANKS1B	ENST00000549866.1,ENST00000547776.2,ENST00000329257.7	chr12	100205932:100206089:100219086:100219167:100377881:100378015,	100219087	100219167	100219152	100219152	Frame_Shift_Del	G	-	p.P50fs
LIHC	TCGA-DD-A1EG-01	ACTR6	ENST00000551652.1,ENST00000188312.2,ENST00000553038.1,ENST00000549977.1,ENST00000547458.1,ENST00000551617.1,ENST00000546902.1,ENST00000552376.1	chr12	100598717:100598835:100599453:100599522:100601440:100601564,	100599454	100599522	100599507	100599507	Frame_Shift_Del	A	-	p.G80fs
LIHC	TCGA-DD-A1EG-01	ACTR6	ENST00000551517.1,ENST00000548180.1,ENST00000552064.1	chr12	100598717:100598835:100599453:100599535:100601440:100601564,	100599454	100599535	100599507	100599507	Frame_Shift_Del	A	-	p.G80fs
LIHC	TCGA-DD-A1EG-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1	chr12	100656041:100656187:100657274:100657671:100660697:100660833,	100657275	100657671	100657655	100657655	Frame_Shift_Del	A	-	p.F58fs
LIHC	TCGA-DD-A1EG-01	SCYL2	ENST00000360820.2,ENST00000549687.1	chr12	100676909:100676925:100685280:100685438:100691808:100691953,	100685281	100685438	100685424	100685424	Frame_Shift_Del	T	-	p.P107fs
LIHC	TCGA-DD-A1EG-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904862	100904862	Frame_Shift_Del	T	-	p.V129fs
LIHC	TCGA-DD-A1EG-01	ANO4	ENST00000392977.3,ENST00000392979.3,ENST00000550015.1,ENST00000299222.9	chr12	101491428:101491486:101491625:101491723:101493355:101493498,	101491626	101491723	101491628	101491628	Frame_Shift_Del	C	-	p.C602fs
LIHC	TCGA-DD-A1EG-01	ANO4	ENST00000392977.3,ENST00000392979.3,ENST00000550015.1,ENST00000299222.9	chr12	101505340:101505488:101510456:101510576:101514297:101514403,	101510457	101510576	101510501	101510501	Frame_Shift_Del	T	-	p.I797fs
LIHC	TCGA-DD-A1EG-01	UTP20	ENST00000551825.1,ENST00000261637.4	chr12	101680098:101680287:101682737:101682819:101683914:101684052,	101682738	101682819	101682780	101682780	Frame_Shift_Del	A	-	p.R186fs
LIHC	TCGA-DD-A1EG-01	UTP20	ENST00000261637.4	chr12	101740228:101740366:101745832:101745972:101746824:101746907,	101745833	101745972	101745957	101745957	Frame_Shift_Del	A	-	p.Q1670fs
LIHC	TCGA-DD-A1EG-01	GNPTAB	ENST00000549194.1,ENST00000550718.1,ENST00000299314.7	chr12	102150989:102151088:102151349:102151435:102153807:102153868,	102151350	102151435	102151384	102151384	Frame_Shift_Del	T	-	p.I1101fs
LIHC	TCGA-DD-A1EG-01	GNPTAB	ENST00000299314.7,ENST00000549940.1	chr12	102182325:102182367:102183715:102183835:102190454:102190540,	102183716	102183835	102183804	102183804	Frame_Shift_Del	A	-	p.Y79fs
LIHC	TCGA-DD-A1EG-01	NT5DC3	ENST00000447799.1	chr12	104169266:104169408:104170821:104171859:104174077:104174142,	104170822	104171859	104171649	104171649	Frame_Shift_Del	G	-	p.P535fs
LIHC	TCGA-DD-A1EG-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104324215:104324342:104325298:104325401:104326054:104326196,	104325299	104325401	104325358	104325358	Frame_Shift_Del	A	-	p.K37fs
LIHC	TCGA-DD-A1EG-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104327733:104328065:104331472:104331584:104332117:104332237,	104331473	104331584	104331534	104331534	Frame_Shift_Del	A	-	p.K270fs
LIHC	TCGA-DD-A1EG-01	C12orf73	ENST00000378090.4	chr12	104348652:104348746:104350408:104350526:104350846:104350912,104345361:104345408:104350408:104350526:104359293:104359473,104347191:104347312:104350408:104350526:104350846:104350912,104345361:104345408:104350408:104350526:104350846:104350912,	104350409	104350526	104350444	104350444	Frame_Shift_Del	C	-	p.A25fs
LIHC	TCGA-DD-A1EG-01	NFYB	ENST00000240055.3,ENST00000551727.1,ENST00000550189.1	chr12	104515031:104515099:104517003:104517201:104519891:104520022,	104517004	104517201	104517052	104517052	Frame_Shift_Del	A	-	p.F127fs
LIHC	TCGA-DD-A1EG-01	NFYB	ENST00000240055.3,ENST00000551727.1,ENST00000550189.1	chr12	104515031:104515099:104517003:104517201:104519891:104520022,	104517004	104517201	104517169	104517169	Frame_Shift_Del	T	-	p.E88fs
LIHC	TCGA-DD-A1EG-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529751.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000527688.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104719114:104719207:104720124:104720201:104721292:104721352,	104720125	104720201	104720198	104720198	Frame_Shift_Del	A	-	p.E363fs
LIHC	TCGA-DD-A1EG-01	POLR3B	ENST00000539066.1,ENST00000228347.4	chr12	106824050:106824251:106826095:106826258:106827496:106827650,	106826096	106826258	106826147	106826147	Frame_Shift_Del	A	-	p.M506fs
LIHC	TCGA-DD-A1EG-01	RIC8B	ENST00000470628.2,ENST00000392839.2,ENST00000462949.1	chr12	107168523:107168607:107177774:107177822:107219503:107219598,107168523:107168607:107177774:107177822:107208473:107208648,	107177775	107177822	107177790	107177790	Frame_Shift_Del	A	-	p.K34fs
LIHC	TCGA-DD-A1EG-01	PRDM4	ENST00000228437.5	chr12	108140051:108140201:108145191:108145986:108147700:108147886,	108145192	108145986	108145792	108145792	Frame_Shift_Del	G	-	p.Q176fs
LIHC	TCGA-DD-A1EG-01	PRDM4	ENST00000550376.1	chr12	108140051:108140201:108145423:108145986:108147700:108147886,	108145424	108145986	108145792	108145792	Frame_Shift_Del	G	-	p.Q176fs
LIHC	TCGA-DD-A1EG-01	WSCD2	ENST00000261400.3	chr12	108523582:108523703:108589058:108589991:108600065:108600180,	108589059	108589991	108589789	108589789	Frame_Shift_Del	G	-	p.E60fs
LIHC	TCGA-DD-A1EG-01	USP30	ENST00000392784.2,ENST00000536723.1,ENST00000257548.5	chr12	109494486:109494596:109495730:109495913:109505328:109505432,	109495731	109495913	109495865	109495865	Frame_Shift_Del	C	-	p.P111fs
LIHC	TCGA-DD-A1EG-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109644514:109644661:109646969:109647158:109650640:109650741,	109646970	109647158	109647001	109647001	Frame_Shift_Del	C	-	p.T1031fs
LIHC	TCGA-DD-A1EG-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109679027:109679086:109680241:109680397:109683430:109683553,	109680242	109680397	109680284	109680284	Frame_Shift_Del	G	-	p.G1689fs
LIHC	TCGA-DD-A1EG-01	KCTD10	ENST00000542262.1,ENST00000542858.1,ENST00000535747.1	chr12	109898440:109898610:109907319:109907533:109915064:109915094,	109907320	109907533	109907450	109907450	Frame_Shift_Del	G	-	p.P29fs
LIHC	TCGA-DD-A1EG-01	KCTD10	ENST00000542262.1,ENST00000542858.1,ENST00000535747.1	chr12	109898440:109898610:109907319:109907533:109915064:109915094,	109907320	109907533	109907479	109907479	Frame_Shift_Del	G	-	p.R20fs
LIHC	TCGA-DD-A1EG-01	TRPV4	ENST00000418703.2,ENST00000537083.1,ENST00000392719.2,ENST00000538125.1,ENST00000541794.1,ENST00000544971.1,ENST00000346520.2,ENST00000536838.1,ENST00000261740.2	chr12	110222120:110222242:110224514:110224642:110226204:110226521,	110224515	110224642	110224604	110224604	Frame_Shift_Del	G	-	p.P749fs
LIHC	TCGA-DD-A1EG-01	ANAPC7	ENST00000464697.1,ENST00000450008.2	chr12	110832905:110833025:110834070:110834257:110841331:110841469,	110834071	110834257	110834116	110834116	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-DD-A1EG-01	GPN3	ENST00000550228.1	chr12	110893642:110893735:110895314:110895439:110897499:110897667,110891616:110891676:110895314:110895439:110897499:110897667,	110895315	110895439	110895351	110895351	Frame_Shift_Del	A	-	p.F177fs
LIHC	TCGA-DD-A1EG-01	TCTN1	ENST00000471804.2,ENST00000397656.4,ENST00000377654.3,ENST00000397655.3,ENST00000480648.1,ENST00000551590.1,ENST00000397659.4	chr12	111051969:111052268:111057640:111057761:111064166:111064187,111051972:111052207:111057640:111057761:111064166:111064187,	111057641	111057761	111057733	111057733	Frame_Shift_Del	T	-	p.F105fs
LIHC	TCGA-DD-A1EG-01	TCTN1	ENST00000490514.1,ENST00000397656.4,ENST00000377654.3,ENST00000495659.2,ENST00000551590.1,ENST00000397659.4,ENST00000464809.1	chr12	111072200:111072268:111072474:111072584:111074285:111074306,111070276:111070364:111072474:111072584:111074285:111074306,	111072475	111072584	111072557	111072557	Frame_Shift_Del	T	-	p.A265fs
LIHC	TCGA-DD-A1EG-01	HVCN1	ENST00000356742.5,ENST00000548312.1,ENST00000549442.1,ENST00000242607.8	chr12	111093038:111093143:111098968:111099253:111121029:111121069,	111098969	111099253	111099006	111099006	Frame_Shift_Del	C	-	p.G90fs
LIHC	TCGA-DD-A1EG-01	HVCN1	ENST00000356742.5,ENST00000548312.1,ENST00000549442.1,ENST00000242607.8	chr12	111093038:111093143:111098968:111099253:111121029:111121069,	111098969	111099253	111099019	111099019	Frame_Shift_Del	G	-	p.L86fs
LIHC	TCGA-DD-A1EG-01	PPP1CC	ENST00000553024.1,ENST00000546933.1,ENST00000335007.5,ENST00000550991.1,ENST00000340766.5	chr12	111159939:111160074:111160276:111160500:111162464:111162519,	111160277	111160500	111160374	111160374	Frame_Shift_Del	C	-	p.G217fs
LIHC	TCGA-DD-A1EG-01	MYL2	ENST00000548438.1	chr12	111351049:111351128:111351989:111352128:111356907:111356997,	111351990	111352128	111352002	111352002	Frame_Shift_Del	C	-	p.E88fs
LIHC	TCGA-DD-A1EG-01	MYL2	ENST00000548438.1	chr12	111351049:111351128:111351989:111352128:111356907:111356997,	111351990	111352128	111352076	111352076	Frame_Shift_Del	T	-	p.N63fs
LIHC	TCGA-DD-A1EG-01	CUX2	ENST00000261726.6	chr12	111760224:111760384:111772244:111772514:111776089:111776278,	111772245	111772514	111772332	111772332	Frame_Shift_Del	C	-	p.S1005fs
LIHC	TCGA-DD-A1EG-01	ACAD10	ENST00000455480.2,ENST00000549590.1,ENST00000413681.3,ENST00000509936.1,ENST00000313698.4,ENST00000507135.1,ENST00000392636.2	chr12	112130500:112130700:112139965:112140114:112143541:112143736,	112139966	112140114	112139969	112139969	Frame_Shift_Del	G	-	p.W64fs
LIHC	TCGA-DD-A1EG-01	ACAD10	ENST00000455480.2,ENST00000549590.1,ENST00000413681.3,ENST00000509936.1,ENST00000313698.4,ENST00000507135.1,ENST00000392636.2	chr12	112139965:112140114:112143541:112143736:112147329:112147488,	112143542	112143736	112143679	112143679	Frame_Shift_Del	T	-	p.N158fs
LIHC	TCGA-DD-A1EG-01	ACAD10	ENST00000508303.1,ENST00000455480.2,ENST00000549590.1,ENST00000552177.1,ENST00000413681.3,ENST00000313698.4,ENST00000392636.2	chr12	112171726:112171872:112174634:112174808:112182446:112182752,	112174635	112174808	112174750	112174750	Frame_Shift_Del	T	-	p.A583fs
LIHC	TCGA-DD-A1EG-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2	chr12	112305375:112305473:112306556:112306665:112308074:112308111,	112306557	112306665	112306591	112306591	Frame_Shift_Del	G	-	p.G108fs
LIHC	TCGA-DD-A1EG-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2,ENST00000549875.1	chr12	112318250:112318331:112321384:112321572:112323719:112323840,	112321385	112321572	112321444	112321444	Frame_Shift_Del	T	-	p.P240fs
LIHC	TCGA-DD-A1EG-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2,ENST00000550968.1	chr12	112641439:112641576:112642289:112642427:112645677:112645804,	112642290	112642427	112642393	112642393	Frame_Shift_Del	A	-	p.F2576fs
LIHC	TCGA-DD-A1EG-01	RPH3A	ENST00000548197.1,ENST00000546703.1,ENST00000543106.2,ENST00000552667.1,ENST00000389385.4,ENST00000547840.1,ENST00000548866.1,ENST00000549769.1,ENST00000547728.1,ENST00000549736.1,ENST00000415485.3,ENST00000551198.1	chr12	113230051:113230068:113266105:113266194:113285500:113285536,113229947:113230068:113266105:113266194:113274295:113274307,	113266106	113266194	113266168	113266168	Frame_Shift_Del	C	-	p.Y15fs
LIHC	TCGA-DD-A1EG-01	RASAL1	ENST00000546530.1,ENST00000548055.1,ENST00000551051.1,ENST00000418411.2	chr12	113543518:113543691:113544901:113545046:113545889:113546027,	113544902	113545046	113544980	113544980	Frame_Shift_Del	G	-	p.L528fs
LIHC	TCGA-DD-A1EG-01	RASAL1	ENST00000546727.1	chr12	113543518:113543691:113544901:113545400:113545889:113546027,	113544902	113545400	113544980	113544980	Frame_Shift_Del	G	-	p.L528fs
LIHC	TCGA-DD-A1EG-01	RASAL1	ENST00000548972.1,ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000546727.1,ENST00000551051.1,ENST00000418411.2	chr12	113553004:113553069:113553439:113553593:113553738:113553856,	113553440	113553593	113553545	113553545	Frame_Shift_Del	C	-	p.D300fs
LIHC	TCGA-DD-A1EG-01	SDS	ENST00000257549.4	chr12	113830249:113830954:113831696:113831821:113834969:113835023,	113831697	113831821	113831787	113831787	Frame_Shift_Del	C	-	p.A230fs
LIHC	TCGA-DD-A1EG-01	SDS	ENST00000257549.4	chr12	113831696:113831821:113834969:113835197:113836319:113836411,	113834970	113835197	113834981	113834981	Frame_Shift_Del	G	-	p.P214fs
LIHC	TCGA-DD-A1EG-01	TBX5	ENST00000310346.4	chr12	114839630:114839725:114841556:114841741:114845618:114846192,	114841557	114841741	114841599	114841599	Frame_Shift_Del	G	-	p.P35fs
LIHC	TCGA-DD-A1EG-01	MED13L	ENST00000281928.3,ENST00000551197.1	chr12	116549232:116549317:116675272:116675510:116714864:116714886,	116675273	116675510	116675317	116675317	Frame_Shift_Del	C	-	p.G89fs
LIHC	TCGA-DD-A1EG-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117657879:117658074:117660519:117660668:117662820:117662942,	117660520	117660668	117660570	117660570	Frame_Shift_Del	C	-	p.V1309fs
LIHC	TCGA-DD-A1EG-01	TAOK3	ENST00000537305.1,ENST00000419821.2,ENST00000392533.3	chr12	118636855:118637062:118639100:118639268:118650718:118650800,	118639101	118639268	118639157	118639157	Frame_Shift_Del	T	-	p.I311fs
LIHC	TCGA-DD-A1EG-01	CIT	ENST00000537607.1,ENST00000392520.2,ENST00000392521.2,ENST00000261833.7,ENST00000545913.1	chr12	120148344:120148425:120149982:120150152:120150395:120150500,	120149983	120150152	120150058	120150058	Frame_Shift_Del	T	-	p.K1593fs
LIHC	TCGA-DD-A1EG-01	CIT	ENST00000392521.2,ENST00000261833.7	chr12	120260623:120260777:120262968:120263172:120270574:120270668,	120262969	120263172	120263103	120263103	Frame_Shift_Del	C	-	p.D275fs
LIHC	TCGA-DD-A1EG-01	COQ5	ENST00000288532.6,ENST00000551769.1,ENST00000552443.1	chr12	120947819:120947926:120954369:120954591:120960016:120960083,	120954370	120954591	120954402	120954402	Frame_Shift_Del	T	-	p.K181fs
LIHC	TCGA-DD-A1EG-01	RNF10	ENST00000535470.1	chr12	121003286:121003332:121004627:121004783:121008993:121009094,121003286:121003332:121004627:121004783:121013433:121013491,	121004628	121004783	121004728	121004728	Frame_Shift_Del	G	-	p.E662fs
LIHC	TCGA-DD-A1EG-01	RNF10	ENST00000535470.1	chr12	121003286:121003332:121004627:121004783:121008993:121009094,121003286:121003332:121004627:121004783:121013433:121013491,	121004628	121004783	121004735	121004735	Frame_Shift_Del	G	-	p.G665fs
LIHC	TCGA-DD-A1EG-01	POP5	ENST00000357500.4	chr12	121017576:121017726:121018917:121019060:121019145:121019182,	121018918	121019060	121019011	121019011	Frame_Shift_Del	G	-	p.L24fs
LIHC	TCGA-DD-A1EG-01	POP5	ENST00000543355.1	chr12	121017576:121017726:121018798:121019060:121019145:121019182,	121018799	121019060	121019011	121019011	Frame_Shift_Del	G	-	p.L24fs
LIHC	TCGA-DD-A1EG-01	OASL	ENST00000257570.5	chr12	121461792:121461940:121465378:121465620:121469244:121469397,	121465379	121465620	121465583	121465583	Frame_Shift_Del	G	-	p.P232fs
LIHC	TCGA-DD-A1EG-01	RNF34	ENST00000392464.2	chr12	121837949:121838021:121853961:121854180:121855306:121855324,	121853962	121854180	121854084	121854084	Frame_Shift_Del	A	-	p.P43fs
LIHC	TCGA-DD-A1EG-01	RNF34	ENST00000392464.2,ENST00000361234.5,ENST00000392465.3	chr12	121853961:121854180:121855306:121855714:121858044:121858137,	121855307	121855714	121855616	121855616	Frame_Shift_Del	T	-	p.F180fs
LIHC	TCGA-DD-A1EG-01	KDM2B	ENST00000377069.4,ENST00000538503.1,ENST00000377071.4,ENST00000538046.2,ENST00000543025.1,ENST00000536437.1	chr12	121932381:121932468:121947369:121947842:121951078:121951205,	121947370	121947842	121947606	121947606	Frame_Shift_Del	T	-	p.R440fs
LIHC	TCGA-DD-A1EG-01	KDM2B	ENST00000377069.4,ENST00000538503.1,ENST00000377071.4,ENST00000538046.2,ENST00000543025.1,ENST00000536437.1	chr12	121932381:121932468:121947369:121947842:121951078:121951205,	121947370	121947842	121947706	121947706	Frame_Shift_Del	T	-	p.K406fs
LIHC	TCGA-DD-A1EG-01	MORN3	ENST00000542364.1,ENST00000392462.2	chr12	122092179:122092339:122097096:122097254:122107244:122107418,	122097097	122097254	122097240	122097240	Frame_Shift_Del	C	-	p.V54fs
LIHC	TCGA-DD-A1EG-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277435:122277744:122277837:122277954:122281615:122281738,	122277838	122277954	122277945	122277945	Frame_Shift_Del	T	-	p.I283fs
LIHC	TCGA-DD-A1EG-01	MLXIP	ENST00000538698.1,ENST00000366272.2,ENST00000319080.7,ENST00000542417.1	chr12	122620174:122620213:122622015:122622137:122622740:122622842,	122622016	122622137	122622113	122622113	Frame_Shift_Del	C	-	p.D710fs
LIHC	TCGA-DD-A1EG-01	CLIP1	ENST00000537178.1	chr12	122821178:122821295:122825299:122826244:122837272:122837333,	122825300	122826244	122826013	122826013	Frame_Shift_Del	G	-	p.R569fs
LIHC	TCGA-DD-A1EG-01	CLIP1	ENST00000361654.4	chr12	122821178:122821295:122825527:122826244:122837272:122837333,	122825528	122826244	122826013	122826013	Frame_Shift_Del	G	-	p.R569fs
LIHC	TCGA-DD-A1EG-01	ZCCHC8	ENST00000536306.1	chr12	122967181:122967242:122967825:122967891:122973932:122974010,	122967826	122967891	122967852	122967852	Frame_Shift_Del	C	-	p.G215fs
LIHC	TCGA-DD-A1EG-01	ZCCHC8	ENST00000540586.1,ENST00000543897.1	chr12	122967181:122967242:122967825:122968110:122973932:122974010,	122967826	122968110	122967852	122967852	Frame_Shift_Del	C	-	p.G215fs
LIHC	TCGA-DD-A1EG-01	RSRC2	ENST00000527173.2,ENST00000532695.1	chr12	122991380:122991470:122992764:122992997:122995655:122995735,	122992765	122992997	122992950	122992950	Frame_Shift_Del	C	-	p.A284fs
LIHC	TCGA-DD-A1EG-01	RSRC2	ENST00000354654.2,ENST00000433877.2,ENST00000331738.7,ENST00000392442.2	chr12	122991380:122991470:122992764:122992994:122995655:122995735,	122992765	122992994	122992950	122992950	Frame_Shift_Del	C	-	p.A284fs
LIHC	TCGA-DD-A1EG-01	KNTC1	ENST00000333479.7	chr12	123060089:123060193:123060346:123060446:123061441:123061576,	123060347	123060446	123060394	123060394	Frame_Shift_Del	T	-	p.L846fs
LIHC	TCGA-DD-A1EG-01	KNTC1	ENST00000333479.7	chr12	123065149:123065217:123067251:123067532:123068824:123068997,	123067252	123067532	123067494	123067494	Frame_Shift_Del	A	-	p.L1075fs
LIHC	TCGA-DD-A1EG-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123339811:123339952:123340097:123340159:123340377:123340450,	123340098	123340159	123340131	123340131	Frame_Shift_Del	C	-	p.P344fs
LIHC	TCGA-DD-A1EG-01	HIP1R	ENST00000541712.1,ENST00000253083.4	chr12	123343384:123343492:123343607:123343744:123343972:123344083,	123343608	123343744	123343626	123343626	Frame_Shift_Del	G	-	p.R726fs
LIHC	TCGA-DD-A1EG-01	ABCB9	ENST00000540285.1,ENST00000346530.5,ENST00000542678.1,ENST00000546289.1,ENST00000392439.3,ENST00000280560.8	chr12	123414557:123414718:123416738:123416875:123419818:123419978,	123416739	123416875	123416800	123416800	Frame_Shift_Del	T	-	p.N660fs
LIHC	TCGA-DD-A1EG-01	ABCB9	ENST00000542678.1,ENST00000540971.1,ENST00000442833.2,ENST00000392439.3,ENST00000344275.7,ENST00000542448.1,ENST00000538895.1,ENST00000442028.2,ENST00000280560.8	chr12	123424753:123424831:123428937:123429066:123430571:123430769,123425492:123425542:123428937:123429066:123430571:123430767,	123428938	123429066	123428977	123428977	Frame_Shift_Del	G	-	p.A447fs
LIHC	TCGA-DD-A1EG-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000607619.1,ENST00000302349.5,ENST00000538250.1	chr12	123647630:123647681:123648496:123648637:123649848:123650009,	123648497	123648637	123648586	123648586	Frame_Shift_Del	T	-	p.K940fs
LIHC	TCGA-DD-A1EG-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123787370:123787447:123789128:123789266:123793856:123793949,	123789129	123789266	123789205	123789205	Frame_Shift_Del	A	-	p.F1231fs
LIHC	TCGA-DD-A1EG-01	SBNO1	ENST00000602750.1,ENST00000602398.1	chr12	123832581:123832680:123834856:123834988:123849247:123849375,	123834857	123834988	123834870	123834870	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-DD-A1EG-01	DDX55	ENST00000542286.1,ENST00000238146.4	chr12	124101104:124101150:124102304:124102419:124103157:124103325,124101104:124101150:124102304:124102419:124103215:124103384,	124102305	124102419	124102348	124102348	Frame_Shift_Del	G	-	p.G366fs
LIHC	TCGA-DD-A1EG-01	TCTN2	ENST00000426174.2,ENST00000303372.5	chr12	124163735:124163836:124171382:124171582:124172597:124172724,	124171383	124171582	124171534	124171534	Frame_Shift_Del	C	-	p.S239fs
LIHC	TCGA-DD-A1EG-01	ATP6V0A2	ENST00000544833.1,ENST00000330342.3,ENST00000534943.1	chr12	124238966:124239084:124241361:124241533:124242473:124242562,	124241362	124241533	124241500	124241500	Frame_Shift_Del	T	-	p.L811fs
LIHC	TCGA-DD-A1EG-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1	chr12	124824839:124824989:124825147:124825297:124826368:124826409,	124825148	124825297	124825249	124825249	Frame_Shift_Del	G	-	p.P1753fs
LIHC	TCGA-DD-A1EG-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1,ENST00000458234.1	chr12	124839023:124839128:124839382:124839485:124839977:124840117,	124839383	124839485	124839407	124839407	Frame_Shift_Del	G	-	p.L1161fs
LIHC	TCGA-DD-A1EG-01	SCARB1	ENST00000546215.1,ENST00000415380.2,ENST00000538291.1,ENST00000544327.1,ENST00000535005.1,ENST00000540495.1,ENST00000261693.6,ENST00000339570.5,ENST00000376788.1,ENST00000541205.1	chr12	125294719:125294835:125296415:125296511:125298747:125298951,	125296416	125296511	125296469	125296469	Frame_Shift_Del	C	-	p.V225fs
LIHC	TCGA-DD-A1EG-01	AACS	ENST00000441247.2,ENST00000316519.6,ENST00000261686.6,ENST00000316543.10	chr12	125599022:125599103:125603186:125603311:125609250:125609315,	125603187	125603311	125603221	125603221	Frame_Shift_Del	T	-	p.L345fs
LIHC	TCGA-DD-A1EG-01	AACS	ENST00000316543.10	chr12	125603186:125603311:125609250:125609570:125612706:125612820,	125609251	125609570	125609482	125609482	Frame_Shift_Del	C	-	p.I407fs
LIHC	TCGA-DD-A1EG-01	AACS	ENST00000316519.6,ENST00000538851.1,ENST00000545511.1,ENST00000261686.6	chr12	125609250:125609315:125609447:125609570:125612706:125612820,	125609448	125609570	125609482	125609482	Frame_Shift_Del	C	-	p.I407fs
LIHC	TCGA-DD-A1EG-01	AACS	ENST00000316543.10	chr12	125603186:125603311:125609250:125609570:125612706:125612820,	125609251	125609570	125609496	125609496	Frame_Shift_Del	C	-	p.S412fs
LIHC	TCGA-DD-A1EG-01	AACS	ENST00000316519.6,ENST00000538851.1,ENST00000545511.1,ENST00000261686.6	chr12	125609250:125609315:125609447:125609570:125612706:125612820,	125609448	125609570	125609496	125609496	Frame_Shift_Del	C	-	p.S412fs
LIHC	TCGA-DD-A1EG-01	SFSWAP	ENST00000535236.1,ENST00000538548.1,ENST00000541286.1,ENST00000261674.4	chr12	132241017:132241189:132249000:132249231:132250662:132250853,	132249001	132249231	132249061	132249061	Frame_Shift_Del	A	-	p.E594fs
LIHC	TCGA-DD-A1EG-01	SFSWAP	ENST00000535236.1,ENST00000538548.1,ENST00000541286.1,ENST00000261674.4	chr12	132241017:132241189:132249000:132249231:132250662:132250853,	132249001	132249231	132249168	132249168	Frame_Shift_Del	C	-	p.P630fs
LIHC	TCGA-DD-A1EG-01	MMP17	ENST00000545790.1	chr12	132313084:132313198:132322739:132322872:132323156:132323286,	132322740	132322872	132322767	132322767	Frame_Shift_Del	C	-	p.P64fs
LIHC	TCGA-DD-A1EG-01	ULK1	ENST00000541761.1,ENST00000321867.4	chr12	132401497:132401607:132401955:132402099:132403041:132403226,	132401956	132402099	132401995	132401995	Frame_Shift_Del	C	-	p.A741fs
LIHC	TCGA-DD-A1EG-01	FBRSL1	ENST00000261673.6	chr12	133067387:133067447:133084738:133084936:133102319:133102409,	133084739	133084936	133084822	133084822	Frame_Shift_Del	C	-	p.C125fs
LIHC	TCGA-DD-A1EG-01	FBRSL1	ENST00000542306.1,ENST00000261673.6,ENST00000434748.2	chr12	133151081:133151150:133153384:133153517:133158024:133158102,	133153385	133153517	133153399	133153399	Frame_Shift_Del	C	-	p.D615fs
LIHC	TCGA-DD-A1EG-01	PXMP2	ENST00000428960.2,ENST00000317479.3	chr12	133266848:133266962:133272469:133272632:133277835:133277955,	133272470	133272632	133272539	133272539	Frame_Shift_Del	C	-	p.V102fs
LIHC	TCGA-DD-A1EG-01	ANKLE2	ENST00000538766.1,ENST00000539605.1,ENST00000357997.5	chr12	133304617:133304749:133306264:133306856:133310970:133311046,	133306265	133306856	133306575	133306575	Frame_Shift_Del	G	-	p.H663fs
LIHC	TCGA-DD-A1EG-01	ZNF268	ENST00000541009.2,ENST00000536435.2,ENST00000416488.1,ENST00000228289.5	chr12	133758531:133758616:133764457:133764658:133768074:133768201,	133764458	133764658	133764640	133764640	Frame_Shift_Del	A	-	p.P72fs
LIHC	TCGA-DD-A1EG-01	ZNF268	ENST00000541975.2,ENST00000500625.3	chr12	133758531:133758616:133764450:133764658:133768074:133768201,	133764451	133764658	133764640	133764640	Frame_Shift_Del	A	-	p.P72fs
LIHC	TCGA-DD-A1EG-01	ZMYM5	ENST00000535942.1	chr13	20409616:20409829:20411795:20411961:20412839:20413125,20409616:20409829:20411795:20411961:20425494:20425588,	20411796	20411961	20411910	20411910	Frame_Shift_Del	T	-	p.K308fs
LIHC	TCGA-DD-A1EG-01	ZMYM2	ENST00000382869.3	chr13	20534097:20534166:20567202:20568059:20576989:20577275,	20567203	20568059	20567417	20567417	Frame_Shift_Del	C	-	p.P71fs
LIHC	TCGA-DD-A1EG-01	ZMYM2	ENST00000382871.2,ENST00000382881.3,ENST00000382874.2,ENST00000382869.3	chr13	20567965:20568059:20576989:20577275:20579213:20579379,	20576990	20577275	20577202	20577202	Frame_Shift_Del	T	-	p.F354fs
LIHC	TCGA-DD-A1EG-01	ZMYM2	ENST00000382871.2,ENST00000382874.2,ENST00000382883.3,ENST00000382869.3	chr13	20593686:20593758:20600751:20600902:20601342:20601458,	20600752	20600902	20600800	20600800	Frame_Shift_Del	T	-	p.F546fs
LIHC	TCGA-DD-A1EG-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000460931.1,ENST00000537103.1,ENST00000382778.4	chr13	21205155:21205241:21212470:21212657:21215428:21215537,	21212471	21212657	21212555	21212555	Frame_Shift_Del	G	-	p.G500fs
LIHC	TCGA-DD-A1EG-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1	chr13	21228014:21228067:21230503:21230569:21237636:21237743,	21230504	21230569	21230567	21230567	Frame_Shift_Del	A	-	p.E698fs
LIHC	TCGA-DD-A1EG-01	SKA3	ENST00000298260.4	chr13	21742360:21742538:21746477:21746643:21746758:21746820,21742360:21742538:21746477:21746643:21750513:21750612,	21746478	21746643	21746552	21746552	Frame_Shift_Del	T	-	p.N86fs
LIHC	TCGA-DD-A1EG-01	ZDHHC20	ENST00000494731.1,ENST00000382466.3,ENST00000542645.1,ENST00000320220.9,ENST00000415724.1,ENST00000400590.3	chr13	21961646:21961773:21965860:21965993:21974511:21974632,	21965861	21965993	21965875	21965875	Frame_Shift_Del	T	-	p.N238fs
LIHC	TCGA-DD-A1EG-01	SGCG	ENST00000537476.1,ENST00000218867.3,ENST00000545013.1	chr13	23869553:23869626:23894775:23894899:23898506:23898680,	23894776	23894899	23894811	23894811	Frame_Shift_Del	C	-	p.A205fs
LIHC	TCGA-DD-A1EG-01	PARP4	ENST00000381989.3	chr13	25068710:25068860:25072253:25072367:25073438:25073514,	25072254	25072367	25072304	25072304	Frame_Shift_Del	C	-	p.D181fs
LIHC	TCGA-DD-A1EG-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25276072:25276209:25280450:25280601:25281160:25281329,	25280451	25280601	25280558	25280558	Frame_Shift_Del	C	-	p.S715fs
LIHC	TCGA-DD-A1EG-01	CENPJ	ENST00000381884.4	chr13	25459743:25459808:25463453:25463538:25466780:25466993,	25463454	25463538	25463471	25463471	Frame_Shift_Del	T	-	p.N1095fs
LIHC	TCGA-DD-A1EG-01	CENPJ	ENST00000381884.4,ENST00000545981.1,ENST00000418179.1	chr13	25466780:25467005:25473556:25473722:25478063:25478132,	25473557	25473722	25473657	25473657	Frame_Shift_Del	T	-	p.K964fs
LIHC	TCGA-DD-A1EG-01	CENPJ	ENST00000381884.4,ENST00000545981.1,ENST00000418179.1	chr13	25466780:25467005:25473556:25473722:25478063:25478132,	25473557	25473722	25473686	25473686	Frame_Shift_Del	T	-	p.K954fs
LIHC	TCGA-DD-A1EG-01	CENPJ	ENST00000381884.4,ENST00000545981.1,ENST00000418179.1	chr13	25466780:25467005:25473556:25473722:25478063:25478132,	25473557	25473722	25473692	25473692	Frame_Shift_Del	T	-	p.K952fs
LIHC	TCGA-DD-A1EG-01	MTIF3	ENST00000461838.1,ENST00000381116.1,ENST00000405591.2,ENST00000431572.2,ENST00000381120.3	chr13	28009820:28010030:28011252:28011410:28014125:28014586,	28011253	28011410	28011260	28011260	Frame_Shift_Del	T	-	p.N204fs
LIHC	TCGA-DD-A1EG-01	MTIF3	ENST00000461838.1,ENST00000381116.1,ENST00000405591.2,ENST00000431572.2,ENST00000381120.3	chr13	28009820:28010030:28011252:28011410:28014125:28014586,	28011253	28011410	28011278	28011278	Frame_Shift_Del	T	-	p.N198fs
LIHC	TCGA-DD-A1EG-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014305	28014305	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A1EG-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014377	28014377	Frame_Shift_Del	T	-	p.K70fs
LIHC	TCGA-DD-A1EG-01	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28624231:28624359:28626681:28626811:28631483:28631599,	28626682	28626811	28626770	28626770	Frame_Shift_Del	T	-	p.M176fs
LIHC	TCGA-DD-A1EG-01	PAN3	ENST00000282391.5	chr13	28813769:28813833:28830428:28830676:28834583:28834688,	28830429	28830676	28830453	28830453	Frame_Shift_Del	C	-	p.S142fs
LIHC	TCGA-DD-A1EG-01	PAN3	ENST00000282391.5	chr13	28813769:28813833:28830428:28830676:28834583:28834688,	28830429	28830676	28830631	28830631	Frame_Shift_Del	G	-	p.T202fs
LIHC	TCGA-DD-A1EG-01	FLT1	ENST00000282397.4,ENST00000540678.1	chr13	28901598:28901687:28903751:28903865:28908161:28908266,	28903752	28903865	28903818	28903818	Frame_Shift_Del	T	-	p.I881fs
LIHC	TCGA-DD-A1EG-01	SLC46A3	ENST00000380814.4,ENST00000266943.6	chr13	29287116:29287687:29291946:29292159:29292632:29292978,	29291947	29292159	29291978	29291978	Frame_Shift_Del	T	-	p.N53fs
LIHC	TCGA-DD-A1EG-01	SLC46A3	ENST00000380814.4,ENST00000266943.6	chr13	29287116:29287687:29291946:29292159:29292632:29292978,	29291947	29292159	29292104	29292104	Frame_Shift_Del	A	-	p.F11fs
LIHC	TCGA-DD-A1EG-01	SLC7A1	ENST00000380752.5	chr13	30106960:30107119:30109955:30110339:30127897:30127997,	30109956	30110339	30110050	30110050	Frame_Shift_Del	G	-	p.P92fs
LIHC	TCGA-DD-A1EG-01	USPL1	ENST00000255304.4	chr13	31211880:31211994:31216764:31216894:31221068:31221194,	31216765	31216894	31216844	31216844	Frame_Shift_Del	T	-	p.S354fs
LIHC	TCGA-DD-A1EG-01	HSPH1	ENST00000445273.2,ENST00000320027.5,ENST00000380405.4	chr13	31726988:31727088:31728769:31728892:31729650:31729791,	31728770	31728892	31728794	31728794	Frame_Shift_Del	T	-	p.K135fs
LIHC	TCGA-DD-A1EG-01	N4BP2L1	ENST00000380139.4	chr13	32977286:32977337:32978339:32978408:32981386:32981475,	32978340	32978408	32978380	32978380	Frame_Shift_Del	A	-	p.F142fs
LIHC	TCGA-DD-A1EG-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306278	33306278	Frame_Shift_Del	C	-	p.P723fs
LIHC	TCGA-DD-A1EG-01	STARD13	ENST00000255486.4,ENST00000336934.5,ENST00000399365.3	chr13	33680894:33681071:33684009:33684227:33684822:33685044,	33684010	33684227	33684038	33684038	Frame_Shift_Del	G	-	p.H1007fs
LIHC	TCGA-DD-A1EG-01	NBEA	ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3	chr13	35691550:35691630:35692364:35692427:35692513:35692611,	35692365	35692427	35692406	35692406	Frame_Shift_Del	T	-	p.N708fs
LIHC	TCGA-DD-A1EG-01	SMAD9	ENST00000350148.5	chr13	37441409:37441520:37446794:37447052:37453414:37453966,37439673:37439895:37446794:37447052:37453414:37453966,	37446795	37447052	37447008	37447008	Frame_Shift_Del	G	-	p.Q153fs
LIHC	TCGA-DD-A1EG-01	SUPT20H	ENST00000356185.3,ENST00000360252.4,ENST00000470359.2,ENST00000497318.1,ENST00000475892.1,ENST00000493537.1,ENST00000464744.1,ENST00000350612.6	chr13	37622014:37622073:37622700:37622736:37625624:37625696,	37622701	37622736	37622714	37622714	Frame_Shift_Del	A	-	p.L9fs
LIHC	TCGA-DD-A1EG-01	POSTN	ENST00000379749.4,ENST00000379747.4	chr13	38144716:38144806:38145505:38145595:38151889:38151934,38144716:38144806:38145505:38145595:38148708:38148789,	38145506	38145595	38145572	38145572	Frame_Shift_Del	T	-	p.I705fs
LIHC	TCGA-DD-A1EG-01	POSTN	ENST00000379749.4,ENST00000379747.4	chr13	38144716:38144806:38145505:38145595:38151889:38151934,38144716:38144806:38145505:38145595:38148708:38148789,	38145506	38145595	38145579	38145579	Frame_Shift_Del	T	-	p.K702fs
LIHC	TCGA-DD-A1EG-01	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41517087:41517280:41517977:41518061:41523941:41524037,	41517978	41518061	41518028	41518028	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-DD-A1EG-01	WBP4	ENST00000542082.1,ENST00000379487.3	chr13	41650179:41650373:41654781:41654945:41656839:41657332,	41654782	41654945	41654831	41654831	Frame_Shift_Del	A	-	p.E269fs
LIHC	TCGA-DD-A1EG-01	MTRF1	ENST00000379480.4,ENST00000379477.1	chr13	41791213:41791364:41797391:41797490:41800567:41800704,	41797392	41797490	41797447	41797447	Frame_Shift_Del	A	-	p.F390fs
LIHC	TCGA-DD-A1EG-01	NAA16	ENST00000476980.1	chr13	41902859:41902979:41905409:41905505:41910785:41910823,41902859:41902979:41905409:41905505:41929279:41929352,	41905410	41905505	41905475	41905475	Frame_Shift_Del	C	-	p.P293fs
LIHC	TCGA-DD-A1EG-01	DGKH	ENST00000337343.4,ENST00000379274.2,ENST00000540693.1,ENST00000538674.1,ENST00000261491.5,ENST00000536612.1	chr13	42772613:42772731:42773701:42773812:42773948:42774045,	42773702	42773812	42773759	42773759	Frame_Shift_Del	A	-	p.A645fs
LIHC	TCGA-DD-A1EG-01	EPSTI1	ENST00000540470.1,ENST00000476830.2,ENST00000398762.3,ENST00000313640.7,ENST00000537828.1,ENST00000535677.1,ENST00000313624.7	chr13	43500526:43500565:43528083:43528157:43537390:43537474,	43528084	43528157	43528133	43528133	Frame_Shift_Del	T	-	p.R172fs
LIHC	TCGA-DD-A1EG-01	LACC1	ENST00000441843.1,ENST00000325686.6	chr13	44462892:44463118:44464249:44464410:44465584:44468067,	44464250	44464410	44464370	44464370	Frame_Shift_Del	T	-	p.N418fs
LIHC	TCGA-DD-A1EG-01	TPT1	ENST00000530705.1,ENST00000309246.5	chr13	45914303:45914319:45914846:45914920:45915176:45915221,	45914847	45914920	45914850	45914850	Frame_Shift_Del	C	-	p.G33fs
LIHC	TCGA-DD-A1EG-01	TPT1	ENST00000527226.1	chr13	45914303:45914319:45914846:45914955:45915176:45915221,	45914847	45914955	45914850	45914850	Frame_Shift_Del	C	-	p.G33fs
LIHC	TCGA-DD-A1EG-01	COG3	ENST00000349995.5	chr13	46090281:46090398:46092896:46092985:46093094:46093229,	46092897	46092985	46092931	46092931	Frame_Shift_Del	C	-	p.V655fs
LIHC	TCGA-DD-A1EG-01	LCP1	ENST00000323076.2,ENST00000398576.2	chr13	46718576:46718655:46721042:46721238:46722486:46722582,	46721043	46721238	46721102	46721102	Frame_Shift_Del	T	-	p.N372fs
LIHC	TCGA-DD-A1EG-01	LRRC63	ENST00000378805.3,ENST00000446175.1,ENST00000595396.1	chr13	46787169:46787254:46801646:46802324:46802799:46802868,	46801647	46802324	46801836	46801836	Frame_Shift_Del	C	-	p.S92fs
LIHC	TCGA-DD-A1EG-01	LRCH1	ENST00000443945.2,ENST00000389797.3,ENST00000389798.3	chr13	47127394:47127838:47224335:47224480:47243164:47243291,	47224336	47224480	47224441	47224441	Frame_Shift_Del	C	-	p.A138fs
LIHC	TCGA-DD-A1EG-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469818	47469818	Frame_Shift_Del	T	-	p.N75fs
LIHC	TCGA-DD-A1EG-01	MED4	ENST00000258648.2,ENST00000417167.1,ENST00000378586.1	chr13	48657506:48657564:48660417:48660588:48664487:48664554,	48660418	48660588	48660487	48660487	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-DD-A1EG-01	FNDC3A	ENST00000398316.3,ENST00000484074.1,ENST00000492622.2,ENST00000541916.1	chr13	49742748:49742887:49746178:49746232:49748570:49748695,	49746179	49746232	49746225	49746225	Frame_Shift_Del	G	-	p.W408fs
LIHC	TCGA-DD-A1EG-01	CDADC1	ENST00000251108.6	chr13	49829974:49830049:49833481:49833659:49840014:49840046,49829974:49830049:49833481:49833659:49841625:49841661,	49833482	49833659	49833613	49833613	Frame_Shift_Del	T	-	p.Y128fs
LIHC	TCGA-DD-A1EG-01	CDADC1	ENST00000251108.6,ENST00000444959.1	chr13	49841625:49842195:49848426:49848476:49852485:49852655,	49848427	49848476	49848460	49848460	Frame_Shift_Del	G	-	p.W345fs
LIHC	TCGA-DD-A1EG-01	CAB39L	ENST00000409130.1,ENST00000409308.1,ENST00000425242.1,ENST00000410043.1,ENST00000347776.5,ENST00000355854.4	chr13	49884787:49885129:49906082:49906226:49913812:49913878,	49906083	49906226	49906095	49906095	Frame_Shift_Del	A	-	p.F274fs
LIHC	TCGA-DD-A1EG-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50056872:50057098:50057599:50057699:50059765:50059859,	50057600	50057699	50057688	50057688	Frame_Shift_Del	G	-	p.G491fs
LIHC	TCGA-DD-A1EG-01	PHF11	ENST00000378319.3,ENST00000496612.1,ENST00000426879.1,ENST00000488958.1,ENST00000465045.1,ENST00000357596.3,ENST00000442195.1	chr13	50095029:50095076:50096178:50096243:50097310:50097343,	50096179	50096243	50096196	50096196	Frame_Shift_Del	A	-	p.K136fs
LIHC	TCGA-DD-A1EG-01	RNASEH2B	ENST00000422660.1	chr13	51483891:51484276:51501542:51501614:51503610:51503718,	51501543	51501614	51501572	51501572	Frame_Shift_Del	A	-	p.K32fs
LIHC	TCGA-DD-A1EG-01	RNASEH2B	ENST00000336617.3,ENST00000422660.1	chr13	51501542:51501614:51503610:51503718:51504818:51504895,	51503611	51503718	51503668	51503668	Frame_Shift_Del	T	-	p.V65fs
LIHC	TCGA-DD-A1EG-01	RNASEH2B	ENST00000495244.2,ENST00000336617.3,ENST00000422660.1	chr13	51503610:51503718:51504818:51504895:51509020:51509135,	51504819	51504895	51504847	51504847	Frame_Shift_Del	G	-	p.V91fs
LIHC	TCGA-DD-A1EG-01	INTS6	ENST00000420668.2	chr13	51961555:51961676:51963454:51963580:51969435:51969619,51961555:51961676:51963454:51963580:52004429:52004519,	51963455	51963580	51963528	51963528	Frame_Shift_Del	G	-	p.S222fs
LIHC	TCGA-DD-A1EG-01	INTS6	ENST00000425000.1,ENST00000491723.1,ENST00000485178.1,ENST00000469430.1,ENST00000311234.4,ENST00000420668.2,ENST00000463928.1,ENST00000461515.1,ENST00000486195.2,ENST00000483288.1,ENST00000398119.2	chr13	52004440:52004519:52025160:52025310:52026113:52026191,	52025161	52025310	52025262	52025262	Frame_Shift_Del	G	-	p.L80fs
LIHC	TCGA-DD-A1EG-01	WDFY2	ENST00000298125.5	chr13	52249305:52249379:52277731:52277786:52293333:52293484,	52277732	52277786	52277774	52277774	Frame_Shift_Del	A	-	p.K108fs
LIHC	TCGA-DD-A1EG-01	WDFY2	ENST00000298125.5	chr13	52301813:52301926:52313184:52313311:52325445:52325551,	52313185	52313311	52313279	52313279	Frame_Shift_Del	A	-	p.R231fs
LIHC	TCGA-DD-A1EG-01	ATP7B	ENST00000417240.2,ENST00000482841.1,ENST00000242839.4,ENST00000344297.5,ENST00000448424.2,ENST00000418097.2,ENST00000400366.3	chr13	52524142:52524297:52524407:52524535:52531651:52531743,	52524408	52524535	52524473	52524473	Frame_Shift_Del	C	-	p.G837fs
LIHC	TCGA-DD-A1EG-01	NEK5	ENST00000355568.4,ENST00000465811.3	chr13	52678633:52678688:52682453:52682540:52684475:52684546,	52682454	52682540	52682490	52682490	Frame_Shift_Del	G	-	p.P173fs
LIHC	TCGA-DD-A1EG-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971406	52971406	Frame_Shift_Del	A	-	p.S328fs
LIHC	TCGA-DD-A1EG-01	DIAPH3	ENST00000498416.1,ENST00000400319.1,ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4,ENST00000400320.1,ENST00000465066.1	chr13	60435540:60435670:60453362:60453602:60485868:60485970,	60453363	60453602	60453529	60453529	Frame_Shift_Del	T	-	p.N815fs
LIHC	TCGA-DD-A1EG-01	DIS3	ENST00000377767.4,ENST00000545453.1,ENST00000490646.1,ENST00000377780.4	chr13	73350062:73350230:73351557:73351631:73352324:73352518,	73351558	73351631	73351616	73351616	Frame_Shift_Del	T	-	p.K199fs
LIHC	TCGA-DD-A1EG-01	PIBF1	ENST00000326291.6	chr13	73482668:73482819:73491213:73491304:73505302:73505405,	73491214	73491304	73491244	73491244	Frame_Shift_Del	T	-	p.L557fs
LIHC	TCGA-DD-A1EG-01	KLF12	ENST00000377669.2,ENST00000472022.1,ENST00000377666.4	chr13	74387288:74387424:74419963:74420510:74518117:74518207,	74419964	74420510	74419990	74419990	Frame_Shift_Del	A	-	p.L215fs
LIHC	TCGA-DD-A1EG-01	TBC1D4	ENST00000413735.1,ENST00000377625.2	chr13	75884170:75884287:75886873:75887034:75900332:75900386,	75886874	75887034	75887015	75887015	Frame_Shift_Del	T	-	p.R748fs
LIHC	TCGA-DD-A1EG-01	TBC1D4	ENST00000431480.2,ENST00000488955.1	chr13	75894149:75894173:75898372:75898537:75900332:75900386,75886917:75887034:75898372:75898537:75900332:75900386,	75898373	75898537	75898377	75898377	Frame_Shift_Del	T	-	p.I732fs
LIHC	TCGA-DD-A1EG-01	LMO7	ENST00000447038.1	chr13	76378455:76378677:76381615:76382335:76383289:76383319,	76381616	76382335	76381703	76381703	Frame_Shift_Del	C	-	p.G480fs
LIHC	TCGA-DD-A1EG-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76410532:76410593:76412275:76412332:76414220:76414246,	76412276	76412332	76412318	76412318	Frame_Shift_Del	A	-	p.Q1198fs
LIHC	TCGA-DD-A1EG-01	MYCBP2	ENST00000357337.6,ENST00000429715.1,ENST00000544440.2,ENST00000407578.2	chr13	77631120:77631228:77632352:77632541:77633657:77633761,	77632353	77632541	77632477	77632477	Frame_Shift_Del	T	-	p.N4402fs
LIHC	TCGA-DD-A1EG-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671893	77671893	Frame_Shift_Del	T	-	p.K3132fs
LIHC	TCGA-DD-A1EG-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672729	77672729	Frame_Shift_Del	T	-	p.S2854fs
LIHC	TCGA-DD-A1EG-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672919	77672919	Frame_Shift_Del	G	-	p.P2790fs
LIHC	TCGA-DD-A1EG-01	RNF219	ENST00000282003.6	chr13	79188425:79191257:79209244:79209333:79212957:79213206,	79209245	79209333	79209322	79209322	Frame_Shift_Del	T	-	p.K187fs
LIHC	TCGA-DD-A1EG-01	TGDS	ENST00000261296.5	chr13	95226307:95227106:95228567:95228665:95229624:95229683,	95228568	95228665	95228625	95228625	Frame_Shift_Del	T	-	p.I309fs
LIHC	TCGA-DD-A1EG-01	ABCC4	ENST00000376887.4,ENST00000431522.1,ENST00000536256.1	chr13	95815863:95815901:95816631:95816772:95818411:95818621,	95816632	95816772	95816653	95816653	Frame_Shift_Del	A	-	p.I718fs
LIHC	TCGA-DD-A1EG-01	UGGT2	ENST00000376747.3	chr13	96511844:96511929:96513041:96513137:96515882:96515968,	96513042	96513137	96513116	96513116	Frame_Shift_Del	T	-	p.K1222fs
LIHC	TCGA-DD-A1EG-01	UGGT2	ENST00000491509.1,ENST00000376747.3	chr13	96519592:96519677:96529532:96529618:96529951:96530110,	96529533	96529618	96529601	96529601	Frame_Shift_Del	T	-	p.K1135fs
LIHC	TCGA-DD-A1EG-01	MBNL2	ENST00000469707.1,ENST00000345429.6	chr13	98009735:98009889:98018712:98018807:98043575:98043853,98017389:98017425:98018712:98018807:98043575:98043853,	98018713	98018807	98018715	98018715	Frame_Shift_Del	C	-	p.P333fs
LIHC	TCGA-DD-A1EG-01	FARP1	ENST00000595437.1,ENST00000376586.2,ENST00000319562.6	chr13	99064154:99064288:99076825:99076904:99083296:99083534,	99076826	99076904	99076843	99076843	Frame_Shift_Del	C	-	p.A615fs
LIHC	TCGA-DD-A1EG-01	FARP1	ENST00000595437.1,ENST00000376586.2,ENST00000319562.6	chr13	99076825:99076904:99083296:99083534:99087829:99087960,	99083297	99083534	99083426	99083426	Frame_Shift_Del	A	-	p.N679fs
LIHC	TCGA-DD-A1EG-01	STK24	ENST00000397517.2,ENST00000444574.1,ENST00000539966.1,ENST00000376547.3	chr13	99118629:99118815:99127074:99127232:99127503:99127612,	99127075	99127232	99127176	99127176	Frame_Shift_Del	C	-	p.A166fs
LIHC	TCGA-DD-A1EG-01	DOCK9	ENST00000419908.1,ENST00000339416.2,ENST00000400228.2,ENST00000376460.1	chr13	99452541:99452732:99457252:99457463:99459914:99460061,	99457253	99457463	99457289	99457289	Frame_Shift_Del	C	-	p.V1911fs
LIHC	TCGA-DD-A1EG-01	DOCK9	ENST00000449796.1,ENST00000448493.2,ENST00000339416.2,ENST00000340449.3,ENST00000376460.1	chr13	99483649:99483784:99483902:99484040:99489747:99489863,	99483903	99484040	99483963	99483963	Frame_Shift_Del	T	-	p.K1441fs
LIHC	TCGA-DD-A1EG-01	DOCK9	ENST00000449796.1,ENST00000448493.2,ENST00000339416.2,ENST00000340449.3,ENST00000376460.1	chr13	99483649:99483784:99483902:99484040:99489747:99489863,	99483903	99484040	99483990	99483990	Frame_Shift_Del	A	-	p.F1432fs
LIHC	TCGA-DD-A1EG-01	TM9SF2	ENST00000376387.4	chr13	100189992:100190117:100191699:100191811:100192967:100193047,	100191700	100191811	100191778	100191778	Frame_Shift_Del	A	-	p.I265fs
LIHC	TCGA-DD-A1EG-01	NALCN	ENST00000470333.1,ENST00000376200.5,ENST00000376196.3,ENST00000497170.1,ENST00000251127.6	chr13	102029267:102029407:102030920:102031004:102047533:102047716,	102030921	102031004	102030966	102030966	Frame_Shift_Del	A	-	p.F110fs
LIHC	TCGA-DD-A1EG-01	ITGBL1	ENST00000376180.3,ENST00000376162.3,ENST00000545560.2	chr13	102235565:102235706:102250502:102250649:102344934:102345051,	102250503	102250649	102250538	102250538	Frame_Shift_Del	A	-	p.K302fs
LIHC	TCGA-DD-A1EG-01	KDELC1	ENST00000376004.4,ENST00000460338.1	chr13	103440183:103440273:103441361:103441571:103443250:103443488,	103441362	103441571	103441460	103441460	Frame_Shift_Del	A	-	p.Y399fs
LIHC	TCGA-DD-A1EG-01	COL4A1	ENST00000375820.4,ENST00000543140.1	chr13	110866128:110866173:110866272:110866362:110895021:110895081,	110866273	110866362	110866334	110866334	Frame_Shift_Del	C	-	p.G58fs
LIHC	TCGA-DD-A1EG-01	ARHGEF7	ENST00000478679.1,ENST00000375737.5,ENST00000375739.2,ENST00000483189.1,ENST00000370623.3,ENST00000375741.2,ENST00000375723.1,ENST00000466143.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5	chr13	111919894:111920017:111926160:111926299:111927077:111927137,	111926161	111926299	111926230	111926230	Frame_Shift_Del	C	-	p.G402fs
LIHC	TCGA-DD-A1EG-01	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113490556:113490565:113496589:113496693:113505350:113505532,	113496590	113496693	113496633	113496633	Frame_Shift_Del	C	-	p.F583fs
LIHC	TCGA-DD-A1EG-01	PCID2	ENST00000375457.2,ENST00000375459.1	chr13	113852504:113852578:113854740:113854830:113862912:113862943,113852504:113852578:113854740:113854830:113862337:113862420,	113854741	113854830	113854774	113854774	Frame_Shift_Del	A	-	p.F29fs
LIHC	TCGA-DD-A1EG-01	LAMP1	ENST00000397181.3	chr13	113951699:113951810:113960799:113960921:113963957:113964020,	113960800	113960921	113960838	113960838	Frame_Shift_Del	A	-	p.K34fs
LIHC	TCGA-DD-A1EG-01	GRTP1	ENST00000375431.4	chr13	113978504:113978892:113979975:113980161:113980233:113980406,	113979976	113980161	113980064	113980064	Frame_Shift_Del	A	-	p.L278fs
LIHC	TCGA-DD-A1EG-01	ADPRHL1	ENST00000356501.4,ENST00000375418.3	chr13	114077140:114077294:114078531:114078664:114079366:114079494,	114078532	114078664	114078573	114078573	Frame_Shift_Del	T	-	p.N207fs
LIHC	TCGA-DD-A1EG-01	DCUN1D2	ENST00000496873.1	chr13	114128524:114128569:114134889:114135058:114144981:114145006,	114134890	114135058	114135038	114135038	Frame_Shift_Del	T	-	p.I81fs
LIHC	TCGA-DD-A1EG-01	TMCO3	ENST00000375391.1,ENST00000474393.1,ENST00000434316.2	chr13	114152656:114152836:114154272:114154464:114156066:114156195,	114154273	114154464	114154334	114154334	Frame_Shift_Del	A	-	p.Q229fs
LIHC	TCGA-DD-A1EG-01	TMCO3	ENST00000434316.2	chr13	114174930:114175048:114188359:114188555:114193671:114193797,	114188360	114188555	114188407	114188407	Frame_Shift_Del	T	-	p.L464fs
LIHC	TCGA-DD-A1EG-01	TMEM255B	ENST00000488362.1,ENST00000375353.3	chr13	114469136:114469230:114472070:114472133:114498120:114498210,	114472071	114472133	114472101	114472101	Frame_Shift_Del	G	-	p.G74fs
LIHC	TCGA-DD-A1EG-01	CDC16	ENST00000356221.3,ENST00000252458.6,ENST00000375308.1,ENST00000360383.3,ENST00000375310.1,ENST00000252457.5,ENST00000375312.3	chr13	115007595:115007755:115008731:115008823:115009330:115009464,	115008732	115008823	115008812	115008812	Frame_Shift_Del	A	-	p.K208fs
LIHC	TCGA-DD-A1EG-01	UPF3A	ENST00000474056.1	chr13	115051993:115052104:115056963:115057019:115057108:115057193,115048311:115048418:115056963:115057019:115057108:115057193,	115056964	115057019	115057004	115057004	Frame_Shift_Del	A	-	p.R224fs
LIHC	TCGA-DD-A1EG-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000555038.1,ENST00000553709.1	chr14	21538526:21538558:21541203:21541401:21542090:21543150,	21541204	21541401	21541274	21541274	Frame_Shift_Del	C	-	p.A25fs
LIHC	TCGA-DD-A1EG-01	HNRNPC	ENST00000555309.1,ENST00000554417.1,ENST00000557201.1,ENST00000556513.1,ENST00000554539.1,ENST00000320084.7,ENST00000554383.1,ENST00000555914.1,ENST00000554455.1,ENST00000420743.2,ENST00000556897.1,ENST00000556628.1,ENST00000430246.2,ENST00000553300.1,ENST00000556142.1,ENST00000557157.1,ENST00000553753.1,ENST00000449098.1,ENST00000336053.6,ENST00000554969.1	chr14	21679968:21680082:21681118:21681276:21698477:21698525,	21681119	21681276	21681132	21681132	Frame_Shift_Del	G	-	p.S170fs
LIHC	TCGA-DD-A1EG-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21881071:21881155:21882459:21882577:21883096:21883152,	21882460	21882577	21882511	21882511	Frame_Shift_Del	T	-	p.K697fs
LIHC	TCGA-DD-A1EG-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992069	21992069	Frame_Shift_Del	T	-	p.K598fs
LIHC	TCGA-DD-A1EG-01	LRP10	ENST00000546834.1,ENST00000359591.4	chr14	23341946:23341991:23342519:23342655:23344263:23344454,	23342520	23342655	23342530	23342530	Frame_Shift_Del	C	-	p.D30fs
LIHC	TCGA-DD-A1EG-01	LRP10	ENST00000553002.1,ENST00000546834.1,ENST00000359591.4	chr14	23342519:23342655:23344263:23344454:23344563:23344674,	23344264	23344454	23344373	23344373	Frame_Shift_Del	G	-	p.G110fs
LIHC	TCGA-DD-A1EG-01	SLC7A8	ENST00000532568.1,ENST00000529705.2,ENST00000316902.7,ENST00000453702.1	chr14	23608632:23608756:23609679:23609833:23612287:23612385,	23609680	23609833	23609739	23609739	Frame_Shift_Del	A	-	p.F243fs
LIHC	TCGA-DD-A1EG-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542776	24542776	Frame_Shift_Del	T	-	p.Y79fs
LIHC	TCGA-DD-A1EG-01	RNF31	ENST00000324103.6,ENST00000382687.3,ENST00000560787.1,ENST00000559275.1	chr14	24618685:24618792:24619269:24619657:24619806:24620097,	24619270	24619657	24619462	24619462	Frame_Shift_Del	G	-	p.L334fs
LIHC	TCGA-DD-A1EG-01	DHRS1	ENST00000559483.1,ENST00000288111.7,ENST00000561273.1,ENST00000558340.1,ENST00000396813.1	chr14	24765714:24765794:24765943:24766087:24768162:24768336,	24765944	24766087	24765949	24765949	Frame_Shift_Del	C	-	p.V97fs
LIHC	TCGA-DD-A1EG-01	ADCY4	ENST00000310677.4,ENST00000545213.1,ENST00000554781.1,ENST00000554577.1,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24787597:24787774:24787859:24787984:24788303:24788418,	24787860	24787984	24787922	24787922	Frame_Shift_Del	A	-	p.W1007fs
LIHC	TCGA-DD-A1EG-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845563	24845563	Frame_Shift_Del	C	-	p.T770fs
LIHC	TCGA-DD-A1EG-01	NFATC4	ENST00000554591.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000554966.1,ENST00000554050.1,ENST00000554473.1,ENST00000553469.1	chr14	24845279:24845307:24845499:24845760:24846843:24846911,	24845500	24845760	24845563	24845563	Frame_Shift_Del	C	-	p.T770fs
LIHC	TCGA-DD-A1EG-01	HECTD1	ENST00000555843.1,ENST00000553957.1,ENST00000553700.1,ENST00000399332.1,ENST00000554882.1	chr14	31582636:31582690:31583082:31583265:31583491:31583534,	31583083	31583265	31583117	31583117	Frame_Shift_Del	T	-	p.N1941fs
LIHC	TCGA-DD-A1EG-01	HECTD1	ENST00000555843.1,ENST00000553957.1,ENST00000553700.1,ENST00000399332.1,ENST00000554882.1	chr14	31582636:31582690:31583082:31583265:31583491:31583534,	31583083	31583265	31583130	31583130	Frame_Shift_Del	T	-	p.S1937fs
LIHC	TCGA-DD-A1EG-01	HECTD1	ENST00000553700.1,ENST00000399332.1	chr14	31597071:31597212:31597817:31598654:31602443:31602620,	31597818	31598654	31597840	31597840	Frame_Shift_Del	C	-	p.G1579fs
LIHC	TCGA-DD-A1EG-01	HECTD1	ENST00000553957.1	chr14	31597071:31597212:31597817:31598513:31602443:31602620,	31597818	31598513	31597840	31597840	Frame_Shift_Del	C	-	p.G1579fs
LIHC	TCGA-DD-A1EG-01	HEATR5A	ENST00000439727.1,ENST00000543095.2,ENST00000389961.3	chr14	31765114:31765269:31774110:31774383:31775937:31776085,31771500:31771725:31774110:31774383:31775937:31776016,	31774111	31774383	31774305	31774305	Frame_Shift_Del	T	-	p.K1682fs
LIHC	TCGA-DD-A1EG-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560649	32560649	Frame_Shift_Del	T	-	p.Y258fs
LIHC	TCGA-DD-A1EG-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560705	32560705	Frame_Shift_Del	A	-	p.E277fs
LIHC	TCGA-DD-A1EG-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562675	32562675	Frame_Shift_Del	T	-	p.F935fs
LIHC	TCGA-DD-A1EG-01	NPAS3	ENST00000356141.4,ENST00000551634.1,ENST00000546849.1,ENST00000551008.1,ENST00000549770.1,ENST00000341321.4,ENST00000548645.1	chr14	33684517:33684632:33836391:33836474:34029326:34029416,	33836392	33836474	33836453	33836453	Frame_Shift_Del	T	-	p.H117fs
LIHC	TCGA-DD-A1EG-01	NPAS3	ENST00000551492.1,ENST00000346562.2,ENST00000547068.1	chr14	33684517:33684632:33836397:33836474:34029326:34029416,	33836398	33836474	33836453	33836453	Frame_Shift_Del	T	-	p.H117fs
LIHC	TCGA-DD-A1EG-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000551008.1,ENST00000341321.4,ENST00000346562.2,ENST00000547068.1,ENST00000357798.5,ENST00000548645.1	chr14	33836397:33836474:34029326:34029416:34145416:34145591,	34029327	34029416	34029369	34029369	Frame_Shift_Del	T	-	p.F139fs
LIHC	TCGA-DD-A1EG-01	EAPP	ENST00000250454.3,ENST00000555705.1,ENST00000554792.1	chr14	34998563:34998681:35002649:35002745:35005299:35005481,	35002650	35002745	35002681	35002681	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-DD-A1EG-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3	chr14	35031865:35032381:35036891:35036977:35037059:35037219,	35036892	35036977	35036932	35036932	Frame_Shift_Del	T	-	p.N260fs
LIHC	TCGA-DD-A1EG-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3,ENST00000555416.1	chr14	35037097:35037219:35044961:35045048:35050766:35050806,	35044962	35045048	35044992	35044992	Frame_Shift_Del	T	-	p.K181fs
LIHC	TCGA-DD-A1EG-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3,ENST00000555416.1	chr14	35037097:35037219:35044961:35045048:35050766:35050806,	35044962	35045048	35045006	35045006	Frame_Shift_Del	A	-	p.S177fs
LIHC	TCGA-DD-A1EG-01	FAM177A1	ENST00000382406.3,ENST00000396472.1,ENST00000280987.4,ENST00000554794.1,ENST00000553955.2	chr14	35522483:35522657:35546355:35546422:35548132:35548218,	35546356	35546422	35546358	35546358	Frame_Shift_Del	A	-	p.T91fs
LIHC	TCGA-DD-A1EG-01	PPP2R3C	ENST00000555726.1,ENST00000553273.1,ENST00000261475.5,ENST00000557217.1,ENST00000554222.1,ENST00000554361.1,ENST00000555614.1	chr14	35565914:35565970:35568457:35568590:35576509:35576580,	35568458	35568590	35568528	35568528	Frame_Shift_Del	T	-	p.K212fs
LIHC	TCGA-DD-A1EG-01	MBIP	ENST00000604336.1,ENST00000359527.7,ENST00000603139.1,ENST00000318473.7,ENST00000605579.1,ENST00000416007.4	chr14	36780782:36780931:36781164:36781230:36783717:36783814,	36781165	36781230	36781199	36781199	Frame_Shift_Del	A	-	p.F201fs
LIHC	TCGA-DD-A1EG-01	SLC25A21	ENST00000331299.5,ENST00000555449.1	chr14	37153032:37153085:37153948:37154130:37180522:37180687,	37153949	37154130	37153981	37153981	Frame_Shift_Del	A	-	p.F251fs
LIHC	TCGA-DD-A1EG-01	MIPOL1	ENST00000539062.2,ENST00000556451.1,ENST00000327441.7,ENST00000536774.1,ENST00000396294.2,ENST00000545536.1,ENST00000537471.1	chr14	37838721:37838829:37892059:37892154:37969112:37969343,	37892060	37892154	37892111	37892111	Frame_Shift_Del	A	-	p.K331fs
LIHC	TCGA-DD-A1EG-01	SEC23A	ENST00000307712.6,ENST00000556092.1,ENST00000548032.2,ENST00000545328.2	chr14	39562390:39562448:39565101:39565343:39572235:39572279,	39565102	39565343	39565266	39565266	Frame_Shift_Del	A	-	p.F19fs
LIHC	TCGA-DD-A1EG-01	GEMIN2	ENST00000412033.2	chr14	39583527:39583679:39584032:39584117:39587202:39587292,39583509:39583599:39584032:39584117:39587202:39587292,	39584033	39584117	39584085	39584085	Frame_Shift_Del	A	-	p.K75fs
LIHC	TCGA-DD-A1EG-01	TRAPPC6B	ENST00000347691.5,ENST00000330149.5	chr14	39627488:39627606:39628686:39628754:39639218:39639518,	39628687	39628754	39628701	39628701	Frame_Shift_Del	T	-	p.Q45fs
LIHC	TCGA-DD-A1EG-01	TRAPPC6B	ENST00000555269.1,ENST00000556765.1	chr14	39627488:39627606:39628653:39628754:39639218:39639518,	39628654	39628754	39628701	39628701	Frame_Shift_Del	T	-	p.Q45fs
LIHC	TCGA-DD-A1EG-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42360958	42360958	Frame_Shift_Del	C	-	p.P631fs
LIHC	TCGA-DD-A1EG-01	C14orf28	ENST00000553841.1	chr14	45369958:45370162:45372409:45372499:45373597:45373732,45369958:45370162:45372409:45372499:45372725:45372816,	45372410	45372499	45372414	45372414	Frame_Shift_Del	C	-	p.P177fs
LIHC	TCGA-DD-A1EG-01	C14orf28	ENST00000553841.1	chr14	45369958:45370162:45372409:45372499:45373597:45373732,45369958:45370162:45372409:45372499:45372725:45372816,	45372410	45372499	45372465	45372465	Frame_Shift_Del	T	-	p.F194fs
LIHC	TCGA-DD-A1EG-01	MIS18BP1	ENST00000310806.4	chr14	45673601:45673656:45675285:45675373:45679582:45679731,	45675286	45675373	45675289	45675289	Frame_Shift_Del	T	-	p.K1079fs
LIHC	TCGA-DD-A1EG-01	MIS18BP1	ENST00000310806.4,ENST00000554093.1,ENST00000469020.1	chr14	45679665:45679731:45686221:45686382:45687484:45687635,	45686222	45686382	45686230	45686230	Frame_Shift_Del	T	-	p.R999fs
LIHC	TCGA-DD-A1EG-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693338	45693338	Frame_Shift_Del	C	-	p.E818fs
LIHC	TCGA-DD-A1EG-01	MIS18BP1	ENST00000454990.1,ENST00000310806.4	chr14	45706899:45706924:45711236:45711721:45711963:45712077,	45711237	45711721	45711691	45711691	Frame_Shift_Del	T	-	p.N230fs
LIHC	TCGA-DD-A1EG-01	LRR1	ENST00000298288.6,ENST00000540712.1	chr14	50069087:50069186:50074117:50074839:50080973:50081388,	50074118	50074839	50074744	50074744	Frame_Shift_Del	A	-	p.G303fs
LIHC	TCGA-DD-A1EG-01	NEMF	ENST00000556925.1	chr14	50295333:50295505:50295771:50295980:50296066:50296144,	50295772	50295980	50295969	50295969	Frame_Shift_Del	T	-	p.K345fs
LIHC	TCGA-DD-A1EG-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50597218:50597480:50600840:50600957:50605329:50605502,	50600841	50600957	50600913	50600913	Frame_Shift_Del	T	-	p.K1001fs
LIHC	TCGA-DD-A1EG-01	SOS2	ENST00000216373.5,ENST00000543680.1,ENST00000555794.1	chr14	50625282:50625364:50626148:50626804:50628199:50628327,	50626149	50626804	50626403	50626403	Frame_Shift_Del	T	-	p.N534fs
LIHC	TCGA-DD-A1EG-01	CDKL1	ENST00000395834.1	chr14	50796829:50796899:50798979:50799150:50801282:50801339,	50798980	50799150	50799040	50799040	Frame_Shift_Del	T	-	p.K303fs
LIHC	TCGA-DD-A1EG-01	MAP4K5	ENST00000554990.1,ENST00000013125.4	chr14	50885242:50886824:50889838:50889894:50892624:50892695,	50889839	50889894	50889879	50889879	Frame_Shift_Del	A	-	p.S805fs
LIHC	TCGA-DD-A1EG-01	MAP4K5	ENST00000554990.1,ENST00000013125.4	chr14	50892624:50892695:50895379:50895472:50895909:50895978,	50895380	50895472	50895423	50895423	Frame_Shift_Del	T	-	p.K761fs
LIHC	TCGA-DD-A1EG-01	ATL1	ENST00000354525.4,ENST00000441560.2	chr14	51089894:51089966:51094748:51095180:51096712:51096727,51089894:51089966:51094748:51095180:51098946:51099038,	51094749	51095180	51094944	51094944	Frame_Shift_Del	A	-	p.K439fs
LIHC	TCGA-DD-A1EG-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51225074	51225074	Frame_Shift_Del	G	-	p.Q892fs
LIHC	TCGA-DD-A1EG-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51230543:51230682:51233024:51233114:51233497:51233513,	51233025	51233114	51233043	51233043	Frame_Shift_Del	T	-	p.E539fs
LIHC	TCGA-DD-A1EG-01	TXNDC16	ENST00000281741.4	chr14	52922158:52922180:52923807:52923892:52936754:52936891,	52923808	52923892	52923855	52923855	Frame_Shift_Del	T	-	p.K552fs
LIHC	TCGA-DD-A1EG-01	PSMC6	ENST00000445930.2,ENST00000606149.1	chr14	53187578:53187699:53187827:53187908:53190682:53190754,	53187828	53187908	53187869	53187869	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-DD-A1EG-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529471	55529471	Frame_Shift_Del	G	-	p.G52fs
LIHC	TCGA-DD-A1EG-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529714	55529714	Frame_Shift_Del	C	-	p.P133fs
LIHC	TCGA-DD-A1EG-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529846	55529846	Frame_Shift_Del	C	-	p.P180fs
LIHC	TCGA-DD-A1EG-01	ATG14	ENST00000247178.5	chr14	55848679:55848909:55852576:55852814:55857628:55857710,	55852577	55852814	55852688	55852688	Frame_Shift_Del	T	-	p.K179fs
LIHC	TCGA-DD-A1EG-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000416613.1,ENST00000395314.3,ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56094629:56094746:56096674:56096815:56099952:56100059,	56096675	56096815	56096741	56096741	Frame_Shift_Del	T	-	p.L383fs
LIHC	TCGA-DD-A1EG-01	EXOC5	ENST00000555148.1,ENST00000413566.2,ENST00000554598.1	chr14	57706312:57706377:57710882:57711077:57713428:57713545,	57710883	57711077	57710898	57710898	Frame_Shift_Del	A	-	p.F150fs
LIHC	TCGA-DD-A1EG-01	EXOC5	ENST00000340918.7	chr14	57710996:57711077:57713428:57713576:57714335:57714361,57706312:57706377:57713428:57713576:57714335:57714361,	57713429	57713576	57713437	57713437	Frame_Shift_Del	T	-	p.S88fs
LIHC	TCGA-DD-A1EG-01	EXOC5	ENST00000555148.1	chr14	57710996:57711077:57713428:57713545:57714335:57714361,	57713429	57713545	57713437	57713437	Frame_Shift_Del	T	-	p.S88fs
LIHC	TCGA-DD-A1EG-01	SLC35F4	ENST00000339762.6,ENST00000554729.1,ENST00000556826.1	chr14	58038611:58038737:58047931:58048151:58055933:58056228,	58047932	58048151	58048047	58048047	Frame_Shift_Del	A	-	p.L232fs
LIHC	TCGA-DD-A1EG-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58956922:58956958:58958861:58958993:58965500:58965678,	58958862	58958993	58958883	58958883	Frame_Shift_Del	G	-	p.G1250fs
LIHC	TCGA-DD-A1EG-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58956922:58956958:58958861:58958993:58965500:58965678,	58958862	58958993	58958907	58958907	Frame_Shift_Del	A	-	p.K1259fs
LIHC	TCGA-DD-A1EG-01	JKAMP	ENST00000555491.1	chr14	59961735:59961805:59965444:59965626:59967908:59967965,	59965445	59965626	59965554	59965554	Frame_Shift_Del	A	-	p.K204fs
LIHC	TCGA-DD-A1EG-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60193811	60193811	Frame_Shift_Del	G	-	p.Q531fs
LIHC	TCGA-DD-A1EG-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60194308	60194308	Frame_Shift_Del	C	-	p.G365fs
LIHC	TCGA-DD-A1EG-01	DHRS7	ENST00000557751.1,ENST00000216500.5,ENST00000536410.2,ENST00000554101.1,ENST00000557185.1	chr14	60616176:60616286:60616782:60616905:60619656:60619892,	60616783	60616905	60616838	60616838	Frame_Shift_Del	G	-	p.P234fs
LIHC	TCGA-DD-A1EG-01	PPM1A	ENST00000325658.3	chr14	60716377:60716395:60749401:60750255:60752341:60752459,60717148:60717199:60749401:60750255:60752341:60752459,	60749402	60750255	60749626	60749626	Frame_Shift_Del	A	-	p.K69fs
LIHC	TCGA-DD-A1EG-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442429	61442429	Frame_Shift_Del	A	-	p.L403fs
LIHC	TCGA-DD-A1EG-01	SLC38A6	ENST00000528350.1	chr14	61497162:61497241:61504342:61504401:61509864:61509926,	61504343	61504401	61504372	61504372	Frame_Shift_Del	T	-	p.F201fs
LIHC	TCGA-DD-A1EG-01	HIF1A	ENST00000323441.6	chr14	62207472:62207906:62211422:62211531:62212408:62212535,62207472:62207906:62211422:62211531:62213651:62214190,	62211423	62211531	62211489	62211489	Frame_Shift_Del	A	-	p.R721fs
LIHC	TCGA-DD-A1EG-01	KCNH5	ENST00000322893.7,ENST00000394968.1	chr14	63246445:63246642:63269046:63269299:63316370:63316570,	63269047	63269299	63269102	63269102	Frame_Shift_Del	A	-	p.F589fs
LIHC	TCGA-DD-A1EG-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000554584.1,ENST00000557005.1	chr14	64469741:64470048:64473760:64473940:64476683:64476834,	64473761	64473940	64473925	64473925	Frame_Shift_Del	C	-	p.A1521fs
LIHC	TCGA-DD-A1EG-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64596765:64596966:64598982:64599156:64600786:64600918,	64598983	64599156	64599113	64599113	Frame_Shift_Del	A	-	p.E1209fs
LIHC	TCGA-DD-A1EG-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64596765:64596966:64598982:64599156:64600786:64600918,	64598983	64599156	64599125	64599125	Frame_Shift_Del	A	-	p.Q1213fs
LIHC	TCGA-DD-A1EG-01	ESR2	ENST00000344288.6	chr14	64701780:64701868:64716263:64716397:64723943:64724082,64701780:64701868:64716263:64716397:64727166:64727245,	64716264	64716397	64716358	64716358	Frame_Shift_Del	A	-	p.F377fs
LIHC	TCGA-DD-A1EG-01	MTHFD1	ENST00000557370.2,ENST00000545908.1,ENST00000556284.1,ENST00000216605.8	chr14	64916328:64916340:64920471:64920579:64921440:64921593,	64920472	64920579	64920487	64920487	Frame_Shift_Del	A	-	p.K825fs
LIHC	TCGA-DD-A1EG-01	MTHFD1	ENST00000545908.1	chr14	64920471:64920579:64921440:64921593:64924931:64925025,64920471:64920579:64921440:64921593:64926476:64926700,	64921441	64921593	64921578	64921578	Frame_Shift_Del	C	-	p.Y901fs
LIHC	TCGA-DD-A1EG-01	PPP1R36	ENST00000557202.1,ENST00000298705.1,ENST00000467261.1	chr14	65032074:65032172:65032343:65032410:65035066:65035165,	65032344	65032410	65032356	65032356	Frame_Shift_Del	T	-	p.L129fs
LIHC	TCGA-DD-A1EG-01	PLEKHG3	ENST00000490180.2	chr14	65197755:65197887:65198078:65198524:65198812:65198899,	65198079	65198524	65198202	65198202	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-DD-A1EG-01	PLEKHG3	ENST00000247226.7,ENST00000394691.1	chr14	65197755:65197887:65198078:65198261:65198431:65198524,	65198079	65198261	65198202	65198202	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-DD-A1EG-01	MAX	ENST00000358402.4,ENST00000556892.1,ENST00000358664.4	chr14	65543326:65543381:65544630:65544754:65560425:65560533,	65544631	65544754	65544693	65544693	Frame_Shift_Del	T	-	p.N78fs
LIHC	TCGA-DD-A1EG-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66188492:66188739:66190864:66191041:66199948:66200099,	66190865	66191041	66191024	66191024	Frame_Shift_Del	A	-	p.L414fs
LIHC	TCGA-DD-A1EG-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66188492:66188739:66190864:66191041:66199948:66200099,	66190865	66191041	66191033	66191033	Frame_Shift_Del	A	-	p.A417fs
LIHC	TCGA-DD-A1EG-01	FUT8	ENST00000417683.1,ENST00000342677.6	chr14	66190864:66191041:66199948:66200099:66208810:66209654,66136132:66136198:66199948:66200099:66208810:66209654,	66199949	66200099	66199984	66199984	Frame_Shift_Del	T	-	p.I432fs
LIHC	TCGA-DD-A1EG-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000557678.1,ENST00000305960.9,ENST00000543237.1,ENST00000555503.1	chr14	67610078:67610166:67626131:67626205:67631878:67631943,	67626132	67626205	67626179	67626179	Frame_Shift_Del	T	-	p.H628fs
LIHC	TCGA-DD-A1EG-01	ATP6V1D	ENST00000554087.1,ENST00000555723.1,ENST00000555625.1,ENST00000555431.1,ENST00000554236.1,ENST00000216442.7	chr14	67812484:67812588:67814125:67814170:67815753:67815778,	67814126	67814170	67814161	67814161	Frame_Shift_Del	A	-	p.L106fs
LIHC	TCGA-DD-A1EG-01	PLEK2	ENST00000216446.4,ENST00000553387.1	chr14	67854968:67855019:67857379:67857463:67859378:67859422,67854968:67855019:67857379:67857463:67862118:67862300,67854968:67855019:67857379:67857463:67859042:67859144,	67857380	67857463	67857428	67857428	Frame_Shift_Del	A	-	p.F269fs
LIHC	TCGA-DD-A1EG-01	ZFYVE26	ENST00000554523.1,ENST00000555452.1,ENST00000554557.1,ENST00000347230.4	chr14	68251050:68251153:68251775:68251994:68252574:68252739,	68251776	68251994	68251871	68251871	Frame_Shift_Del	G	-	p.P1143fs
LIHC	TCGA-DD-A1EG-01	ACTN1	ENST00000193403.6,ENST00000556083.1	chr14	69345174:69345240:69345705:69345786:69346678:69346825,69343798:69343957:69345705:69345786:69346678:69346825,	69345706	69345786	69345708	69345708	Frame_Shift_Del	G	-	p.Q787fs
LIHC	TCGA-DD-A1EG-01	ACTN1	ENST00000193403.6,ENST00000438964.2,ENST00000376839.3,ENST00000556083.1,ENST00000394419.4,ENST00000544964.2,ENST00000538545.2	chr14	69349589:69349772:69350884:69351025:69351491:69351600,	69350885	69351025	69350938	69350938	Frame_Shift_Del	C	-	p.A528fs
LIHC	TCGA-DD-A1EG-01	GALNT16	ENST00000337827.4	chr14	69814593:69814719:69818747:69818887:69820048:69821183,	69818748	69818887	69818759	69818759	Frame_Shift_Del	A	-	p.R517fs
LIHC	TCGA-DD-A1EG-01	SLC8A3	ENST00000356921.2	chr14	70518706:70518831:70527552:70527656:70546681:70546897,70518706:70518831:70527552:70527656:70633355:70635201,	70527553	70527656	70527589	70527589	Frame_Shift_Del	G	-	p.L618fs
LIHC	TCGA-DD-A1EG-01	MAP3K9	ENST00000555993.2,ENST00000554752.2	chr14	71201102:71201215:71202677:71202746:71204961:71205115,	71202678	71202746	71202687	71202687	Frame_Shift_Del	A	-	p.F635fs
LIHC	TCGA-DD-A1EG-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000554874.1,ENST00000381232.3	chr14	72191386:72191552:72196771:72197018:72200382:72200529,	72196772	72197018	72196883	72196883	Frame_Shift_Del	T	-	p.F1598fs
LIHC	TCGA-DD-A1EG-01	PSEN1	ENST00000553855.1,ENST00000394164.1,ENST00000261970.3,ENST00000324501.5,ENST00000406768.1,ENST00000557511.1,ENST00000555386.1,ENST00000357710.4,ENST00000344094.3	chr14	73640273:73640415:73653560:73653628:73659351:73659572,	73653561	73653628	73653606	73653606	Frame_Shift_Del	T	-	p.F177fs
LIHC	TCGA-DD-A1EG-01	PAPLN	ENST00000340738.5,ENST00000216658.5,ENST00000555445.1,ENST00000554301.1,ENST00000555700.1,ENST00000427855.1,ENST00000557061.1	chr14	73733208:73733336:73733430:73733539:73735264:73735431,	73733431	73733539	73733454	73733454	Frame_Shift_Del	C	-	p.P1140fs
LIHC	TCGA-DD-A1EG-01	ELMSAN1	ENST00000451078.1,ENST00000476562.1,ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74186085:74186204:74187999:74188212:74189400:74189550,	74188000	74188212	74188110	74188110	Frame_Shift_Del	C	-	p.E945fs
LIHC	TCGA-DD-A1EG-01	ELMSAN1	ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74196342:74196688:74203700:74204000:74205262:74206177,	74203701	74204000	74203931	74203931	Frame_Shift_Del	A	-	p.S507fs
LIHC	TCGA-DD-A1EG-01	FAM161B	ENST00000534936.1,ENST00000286544.3	chr14	74404304:74404404:74404650:74404815:74407628:74407756,	74404651	74404815	74404753	74404753	Frame_Shift_Del	T	-	p.K552fs
LIHC	TCGA-DD-A1EG-01	COQ6	ENST00000334571.2,ENST00000554341.2,ENST00000554320.1,ENST00000555511.1,ENST00000394026.4,ENST00000238709.4	chr14	74425864:74425927:74426117:74426225:74427875:74427959,	74426118	74426225	74426194	74426194	Frame_Shift_Del	A	-	p.E287fs
LIHC	TCGA-DD-A1EG-01	NPC2	ENST00000555592.1	chr14	74953031:74953139:74959895:74960040:74960272:74960311,	74959896	74960040	74959970	74959970	Frame_Shift_Del	A	-	p.F3fs
LIHC	TCGA-DD-A1EG-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74989492:74989621:74991826:74991928:74992777:74992817,	74991827	74991928	74991861	74991861	Frame_Shift_Del	G	-	p.P832fs
LIHC	TCGA-DD-A1EG-01	AREL1	ENST00000469797.1,ENST00000356357.4,ENST00000556202.1,ENST00000555330.1,ENST00000557401.1	chr14	75142843:75143024:75143285:75143455:75149998:75150098,	75143286	75143455	75143343	75143343	Frame_Shift_Del	G	-	p.P198fs
LIHC	TCGA-DD-A1EG-01	YLPM1	ENST00000238571.3,ENST00000325680.7	chr14	75230068:75231065:75245149:75245386:75247107:75247287,	75245150	75245386	75245212	75245212	Frame_Shift_Del	T	-	p.H312fs
LIHC	TCGA-DD-A1EG-01	DLST	ENST00000334212.6,ENST00000238671.7,ENST00000554806.1,ENST00000334220.4,ENST00000554612.1,ENST00000555089.1,ENST00000555190.1	chr14	75360050:75360127:75361014:75361112:75365071:75365158,	75361015	75361112	75361089	75361089	Frame_Shift_Del	A	-	p.T250fs
LIHC	TCGA-DD-A1EG-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514214	75514214	Frame_Shift_Del	G	-	p.P715fs
LIHC	TCGA-DD-A1EG-01	TTLL5	ENST00000298832.9,ENST00000555290.1,ENST00000557636.1,ENST00000286650.5,ENST00000556173.1	chr14	76147887:76147970:76149892:76149999:76156534:76156625,	76149893	76149999	76149995	76149995	Frame_Shift_Del	C	-	p.P123fs
LIHC	TCGA-DD-A1EG-01	TTLL5	ENST00000298832.9,ENST00000554148.1,ENST00000557636.1,ENST00000554935.1	chr14	76186121:76186169:76186938:76187046:76198680:76198762,	76186939	76187046	76186971	76186971	Frame_Shift_Del	A	-	p.K323fs
LIHC	TCGA-DD-A1EG-01	TTLL5	ENST00000555422.1,ENST00000298832.9	chr14	76203908:76203950:76211437:76211551:76211832:76211924,76201537:76201632:76211437:76211551:76211832:76211924,	76211438	76211551	76211474	76211474	Frame_Shift_Del	A	-	p.K440fs
LIHC	TCGA-DD-A1EG-01	GPATCH2L	ENST00000312858.5,ENST00000554125.1,ENST00000261530.7	chr14	76618278:76618334:76620696:76621368:76633005:76633070,	76620697	76621368	76621055	76621055	Frame_Shift_Del	T	-	p.F117fs
LIHC	TCGA-DD-A1EG-01	GPATCH2L	ENST00000312858.5	chr14	76642965:76643033:76644234:76644274:76647106:76647192,	76644235	76644274	76644254	76644254	Frame_Shift_Del	G	-	p.G358fs
LIHC	TCGA-DD-A1EG-01	TMEM63C	ENST00000298351.4	chr14	77706817:77706951:77708689:77708812:77709245:77709399,	77708690	77708812	77708776	77708776	Frame_Shift_Del	G	-	p.R384fs
LIHC	TCGA-DD-A1EG-01	TMEM63C	ENST00000298351.4	chr14	77709245:77709399:77710691:77710798:77712282:77712369,	77710692	77710798	77710715	77710715	Frame_Shift_Del	C	-	p.F455fs
LIHC	TCGA-DD-A1EG-01	VIPAS39	ENST00000553888.1,ENST00000557658.1,ENST00000553691.1,ENST00000343765.2,ENST00000556412.1	chr14	77916056:77916095:77917529:77917676:77919641:77919727,	77917530	77917676	77917534	77917534	Frame_Shift_Del	A	-	p.F113fs
LIHC	TCGA-DD-A1EG-01	VIPAS39	ENST00000553888.1,ENST00000557658.1,ENST00000553691.1,ENST00000343765.2,ENST00000556412.1	chr14	77916056:77916095:77917529:77917676:77919641:77919727,	77917530	77917676	77917607	77917607	Frame_Shift_Del	T	-	p.K89fs
LIHC	TCGA-DD-A1EG-01	AHSA1	ENST00000556369.1,ENST00000535854.2,ENST00000216479.3,ENST00000555473.1,ENST00000555133.1	chr14	77931916:77932010:77934425:77934527:77934799:77934851,	77934426	77934527	77934516	77934516	Frame_Shift_Del	T	-	p.F261fs
LIHC	TCGA-DD-A1EG-01	ISM2	ENST00000393684.3,ENST00000429906.1,ENST00000342219.4,ENST00000216481.6	chr14	77944917:77945058:77948664:77949010:77950665:77950908,	77948665	77949010	77948857	77948857	Frame_Shift_Del	C	-	p.A173fs
LIHC	TCGA-DD-A1EG-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251577	81251577	Frame_Shift_Del	G	-	p.Q625fs
LIHC	TCGA-DD-A1EG-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251798	81251798	Frame_Shift_Del	G	-	p.T551fs
LIHC	TCGA-DD-A1EG-01	CEP128	ENST00000281129.3,ENST00000555265.1	chr14	81259103:81259454:81297486:81297638:81302548:81302680,	81297487	81297638	81297511	81297511	Frame_Shift_Del	T	-	p.K395fs
LIHC	TCGA-DD-A1EG-01	CEP128	ENST00000281129.3,ENST00000554827.1,ENST00000216517.6,ENST00000555265.1	chr14	81307025:81307112:81329100:81329217:81362061:81362134,	81329101	81329217	81329131	81329131	Frame_Shift_Del	T	-	p.Q244fs
LIHC	TCGA-DD-A1EG-01	TSHR	ENST00000298171.2,ENST00000541158.2	chr14	81574718:81574796:81606022:81606211:81609283:81610693,	81606023	81606211	81606100	81606100	Frame_Shift_Del	C	-	p.T257fs
LIHC	TCGA-DD-A1EG-01	SEL1L	ENST00000336735.4,ENST00000554744.1,ENST00000555824.1	chr14	81969064:81969227:81970544:81970650:81972417:81972499,	81970545	81970650	81970549	81970549	Frame_Shift_Del	T	-	p.R204fs
LIHC	TCGA-DD-A1EG-01	SEL1L	ENST00000336735.4,ENST00000555824.1	chr14	81972417:81972585:81993076:81993308:81994044:81994082,	81993077	81993308	81993115	81993115	Frame_Shift_Del	T	-	p.N101fs
LIHC	TCGA-DD-A1EG-01	GALC	ENST00000474294.2,ENST00000261304.2,ENST00000554372.1,ENST00000557316.1	chr14	88454487:88454551:88454798:88454867:88459313:88459466,	88454799	88454867	88454858	88454858	Frame_Shift_Del	G	-	p.R69fs
LIHC	TCGA-DD-A1EG-01	ZC3H14	ENST00000557607.1,ENST00000302216.8	chr14	89042183:89042284:89044328:89044484:89068267:89068353,89042183:89042284:89044328:89044484:89063077:89063152,89042183:89042284:89044328:89044484:89073586:89073707,	89044329	89044484	89044419	89044419	Frame_Shift_Del	C	-	p.T405fs
LIHC	TCGA-DD-A1EG-01	ZC3H14	ENST00000556110.1	chr14	89042183:89042284:89044336:89044484:89068267:89068353,	89044337	89044484	89044419	89044419	Frame_Shift_Del	C	-	p.T405fs
LIHC	TCGA-DD-A1EG-01	ZC3H14	ENST00000557607.1,ENST00000302216.8	chr14	89042183:89042284:89044328:89044484:89068267:89068353,89042183:89042284:89044328:89044484:89063077:89063152,89042183:89042284:89044328:89044484:89073586:89073707,	89044329	89044484	89044442	89044442	Frame_Shift_Del	A	-	p.K413fs
LIHC	TCGA-DD-A1EG-01	ZC3H14	ENST00000556110.1	chr14	89042183:89042284:89044336:89044484:89068267:89068353,	89044337	89044484	89044442	89044442	Frame_Shift_Del	A	-	p.K413fs
LIHC	TCGA-DD-A1EG-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087182	89087182	Frame_Shift_Del	T	-	p.N1764fs
LIHC	TCGA-DD-A1EG-01	NRDE2	ENST00000354366.3	chr14	90770297:90770726:90778737:90778887:90782921:90783155,	90778738	90778887	90778772	90778772	Frame_Shift_Del	C	-	p.E175fs
LIHC	TCGA-DD-A1EG-01	TTC7B	ENST00000328459.6,ENST00000555894.1	chr14	91059829:91059970:91077085:91077183:91084272:91084367,	91077086	91077183	91077112	91077112	Frame_Shift_Del	A	-	p.L647fs
LIHC	TCGA-DD-A1EG-01	TTC7B	ENST00000357056.2,ENST00000328459.6	chr14	91146815:91146879:91155883:91156056:91161843:91161922,	91155884	91156056	91155927	91155927	Frame_Shift_Del	T	-	p.T303fs
LIHC	TCGA-DD-A1EG-01	RPS6KA5	ENST00000261991.3,ENST00000418736.2,ENST00000556178.1,ENST00000554206.1,ENST00000536315.2	chr14	91367018:91367080:91369151:91369313:91372492:91372643,	91369152	91369313	91369281	91369281	Frame_Shift_Del	T	-	p.K330fs
LIHC	TCGA-DD-A1EG-01	RPS6KA5	ENST00000261991.3,ENST00000418736.2,ENST00000536315.2	chr14	91389456:91389540:91409421:91409529:91413778:91413894,	91409422	91409529	91409495	91409495	Frame_Shift_Del	T	-	p.N182fs
LIHC	TCGA-DD-A1EG-01	RPS6KA5	ENST00000261991.3,ENST00000418736.2,ENST00000554206.1,ENST00000536315.2	chr14	91413778:91413894:91444649:91444868:91467431:91467503,	91444650	91444868	91444669	91444669	Frame_Shift_Del	G	-	p.T125fs
LIHC	TCGA-DD-A1EG-01	RPS6KA5	ENST00000418736.2,ENST00000554206.1	chr14	91444738:91444868:91467431:91467503:91526675:91526929,	91467432	91467503	91467460	91467460	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-DD-A1EG-01	CCDC88C	ENST00000389857.6	chr14	91791122:91791267:91792253:91792400:91804348:91804507,	91792254	91792400	91792321	91792321	Frame_Shift_Del	C	-	p.G377fs
LIHC	TCGA-DD-A1EG-01	CATSPERB	ENST00000256343.3	chr14	92136157:92136316:92139210:92139360:92140519:92140566,	92139211	92139360	92139282	92139282	Frame_Shift_Del	T	-	p.I353fs
LIHC	TCGA-DD-A1EG-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92470106	92470106	Frame_Shift_Del	A	-	p.L1405fs
LIHC	TCGA-DD-A1EG-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472174	92472174	Frame_Shift_Del	T	-	p.M716fs
LIHC	TCGA-DD-A1EG-01	ATXN3	ENST00000553570.1,ENST00000555958.1,ENST00000340660.6	chr14	92559595:92559662:92562436:92562481:92572872:92572906,92555111:92555161:92562436:92562481:92572872:92572906,92555111:92555161:92562436:92562481:92563017:92563182,92560089:92560175:92562436:92562481:92563017:92563182,92560089:92560175:92562436:92562481:92572872:92572906,	92562437	92562481	92562447	92562447	Frame_Shift_Del	A	-	p.F75fs
LIHC	TCGA-DD-A1EG-01	ATXN3	ENST00000554592.1	chr14	92560089:92560175:92562436:92562478:92563017:92563182,	92562437	92562478	92562447	92562447	Frame_Shift_Del	A	-	p.F75fs
LIHC	TCGA-DD-A1EG-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000216487.7	chr14	93107582:93107674:93117926:93119420:93125505:93125814,	93117927	93119420	93118768	93118768	Frame_Shift_Del	C	-	p.V458fs
LIHC	TCGA-DD-A1EG-01	CHGA	ENST00000216492.5	chr14	93396063:93396160:93397594:93398047:93398714:93398725,	93397595	93398047	93398010	93398010	Frame_Shift_Del	C	-	p.H257fs
LIHC	TCGA-DD-A1EG-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000334746.5	chr14	93719992:93720136:93723540:93723701:93727947:93728023,	93723541	93723701	93723648	93723648	Frame_Shift_Del	T	-	p.R502fs
LIHC	TCGA-DD-A1EG-01	BTBD7	ENST00000554565.1	chr14	93727947:93728023:93730130:93730339:93760203:93760274,93727947:93728023:93730130:93730339:93799165:93799367,	93730131	93730339	93730184	93730184	Frame_Shift_Del	A	-	p.Y440fs
LIHC	TCGA-DD-A1EG-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1,ENST00000555664.1	chr14	93995631:93995672:93998895:93998924:94004334:94004564,	93998896	93998924	93998919	93998919	Frame_Shift_Del	A	-	p.K374fs
LIHC	TCGA-DD-A1EG-01	DDX24	ENST00000555054.1,ENST00000544005.1,ENST00000330836.5	chr14	94519343:94519473:94521341:94521530:94524167:94524243,	94521342	94521530	94521360	94521360	Frame_Shift_Del	T	-	p.K720fs
LIHC	TCGA-DD-A1EG-01	DDX24	ENST00000555054.1,ENST00000544005.1,ENST00000330836.5	chr14	94519343:94519473:94521341:94521530:94524167:94524243,	94521342	94521530	94521423	94521423	Frame_Shift_Del	A	-	p.F699fs
LIHC	TCGA-DD-A1EG-01	IFI27	ENST00000553285.1,ENST00000557098.1,ENST00000555744.1,ENST00000298902.5,ENST00000556544.1	chr14	94578004:94578119:94582126:94582279:94582778:94582784,94581196:94581226:94582126:94582279:94582778:94582784,	94582127	94582279	94582231	94582231	Frame_Shift_Del	G	-	p.G78fs
LIHC	TCGA-DD-A1EG-01	PPP4R4	ENST00000304338.3	chr14	94703901:94704023:94707009:94707132:94708124:94708294,	94707010	94707132	94707055	94707055	Frame_Shift_Del	A	-	p.E300fs
LIHC	TCGA-DD-A1EG-01	SERPINA6	ENST00000341584.3	chr14	94776072:94776343:94780372:94781004:94789603:94789656,	94780373	94781004	94780786	94780786	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A1EG-01	SERPINA11	ENST00000334708.3	chr14	94909414:94909562:94912667:94912941:94914468:94914597,	94912668	94912941	94912837	94912837	Frame_Shift_Del	T	-	p.M250fs
LIHC	TCGA-DD-A1EG-01	DICER1	ENST00000393063.1,ENST00000556045.1,ENST00000527414.1,ENST00000526495.1,ENST00000343455.3	chr14	95557370:95557446:95557539:95557702:95560224:95560493,	95557540	95557702	95557687	95557687	Frame_Shift_Del	C	-	p.E1794fs
LIHC	TCGA-DD-A1EG-01	DICER1	ENST00000393063.1,ENST00000529720.1,ENST00000526495.1	chr14	95598947:95599014:95599651:95599840:95606995:95607096,	95599652	95599840	95599740	95599740	Frame_Shift_Del	G	-	p.P19fs
LIHC	TCGA-DD-A1EG-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669190	95669190	Frame_Shift_Del	G	-	p.P832fs
LIHC	TCGA-DD-A1EG-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670451	95670451	Frame_Shift_Del	T	-	p.K412fs
LIHC	TCGA-DD-A1EG-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670514	95670514	Frame_Shift_Del	C	-	p.G391fs
LIHC	TCGA-DD-A1EG-01	CLMN	ENST00000298912.4	chr14	95677022:95677216:95679555:95679746:95681977:95682070,	95679556	95679746	95679590	95679590	Frame_Shift_Del	C	-	p.A192fs
LIHC	TCGA-DD-A1EG-01	CLMN	ENST00000555336.2,ENST00000555615.1,ENST00000298912.4	chr14	95679656:95679746:95681977:95682070:95688027:95688111,	95681978	95682070	95682065	95682065	Frame_Shift_Del	T	-	p.K110fs
LIHC	TCGA-DD-A1EG-01	BCL11B	ENST00000357195.3	chr14	99640297:99642532:99697681:99697894:99723807:99724173,	99697682	99697894	99697775	99697775	Frame_Shift_Del	G	-	p.L183fs
LIHC	TCGA-DD-A1EG-01	SETD3	ENST00000357563.4,ENST00000329331.3,ENST00000453764.1,ENST00000446066.1,ENST00000436070.2	chr14	99929822:99929915:99932039:99932150:99947064:99947125,	99932040	99932150	99932118	99932118	Frame_Shift_Del	T	-	p.T9fs
LIHC	TCGA-DD-A1EG-01	HHIPL1	ENST00000330710.5,ENST00000357223.2	chr14	100118560:100119207:100123336:100123480:100125764:100126093,	100123337	100123480	100123390	100123390	Frame_Shift_Del	T	-	p.L319fs
LIHC	TCGA-DD-A1EG-01	SLC25A47	ENST00000557052.1,ENST00000361529.3	chr14	100793524:100793707:100795062:100795381:100795701:100796473,	100795063	100795381	100795168	100795168	Frame_Shift_Del	C	-	p.P146fs
LIHC	TCGA-DD-A1EG-01	SLC25A47	ENST00000557052.1,ENST00000361529.3	chr14	100793524:100793707:100795062:100795381:100795701:100796473,	100795063	100795381	100795186	100795186	Frame_Shift_Del	C	-	p.P152fs
LIHC	TCGA-DD-A1EG-01	PPP2R5C	ENST00000553890.1	chr14	102229264:102229307:102252354:102252520:102323022:102323094,102229264:102229307:102252354:102252520:102302505:102302769,	102252355	102252520	102252500	102252500	Frame_Shift_Del	A	-	p.Q80fs
LIHC	TCGA-DD-A1EG-01	PPP2R5C	ENST00000557621.1,ENST00000445439.3,ENST00000553730.1,ENST00000334743.5,ENST00000557095.1,ENST00000350249.3	chr14	102252457:102252520:102323022:102323222:102348497:102348542,102276241:102276373:102323022:102323222:102348497:102348542,	102323023	102323222	102323050	102323050	Frame_Shift_Del	T	-	p.L72fs
LIHC	TCGA-DD-A1EG-01	DYNC1H1	ENST00000360184.4	chr14	102461322:102461433:102461517:102461637:102463371:102463611,	102461518	102461637	102461602	102461602	Frame_Shift_Del	A	-	p.K1177fs
LIHC	TCGA-DD-A1EG-01	DYNC1H1	ENST00000360184.4	chr14	102478650:102478807:102481441:102481669:102482192:102482423,	102481442	102481669	102481656	102481656	Frame_Shift_Del	C	-	p.S2410fs
LIHC	TCGA-DD-A1EG-01	HSP90AA1	ENST00000216281.8,ENST00000334701.7	chr14	102547385:102548158:102548447:102548781:102549370:102549639,	102548448	102548781	102548493	102548493	Frame_Shift_Del	G	-	p.Q804fs
LIHC	TCGA-DD-A1EG-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675183	102675183	Frame_Shift_Del	T	-	p.F226fs
LIHC	TCGA-DD-A1EG-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675590	102675590	Frame_Shift_Del	C	-	p.R361fs
LIHC	TCGA-DD-A1EG-01	CINP	ENST00000216756.6,ENST00000559514.1,ENST00000536961.2	chr14	102816342:102816385:102822104:102822234:102825755:102825924,	102822105	102822234	102822108	102822108	Frame_Shift_Del	C	-	p.G101fs
LIHC	TCGA-DD-A1EG-01	RCOR1	ENST00000560472.1	chr14	103187656:103187714:103188523:103188753:103192804:103192898,103187358:103187421:103188523:103188753:103192804:103192922,	103188524	103188753	103188601	103188601	Frame_Shift_Del	T	-	p.F424fs
LIHC	TCGA-DD-A1EG-01	CDC42BPB	ENST00000361246.2	chr14	103470264:103470360:103474808:103474892:103478433:103478525,	103474809	103474892	103474844	103474844	Frame_Shift_Del	T	-	p.I106fs
LIHC	TCGA-DD-A1EG-01	MARK3	ENST00000303622.9,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000429436.2	chr14	103928741:103928798:103931893:103932130:103932308:103932428,	103931894	103932130	103932078	103932078	Frame_Shift_Del	T	-	p.I242fs
LIHC	TCGA-DD-A1EG-01	ASPG	ENST00000551177.1,ENST00000455920.2,ENST00000549809.1,ENST00000546892.2,ENST00000548372.1	chr14	104571664:104571787:104573135:104573231:104573518:104573556,	104573136	104573231	104573171	104573171	Frame_Shift_Del	C	-	p.S403fs
LIHC	TCGA-DD-A1EG-01	ASPG	ENST00000546892.2	chr14	104573566:104573682:104575565:104575652:104578256:104578337,	104575566	104575652	104575607	104575607	Frame_Shift_Del	C	-	p.S492fs
LIHC	TCGA-DD-A1EG-01	INF2	ENST00000398337.4,ENST00000392634.4	chr14	105155973:105156076:105167693:105168093:105169441:105169557,	105167694	105168093	105167756	105167756	Frame_Shift_Del	G	-	p.L18fs
LIHC	TCGA-DD-A1EG-01	INF2	ENST00000398337.4,ENST00000392634.4,ENST00000330634.7	chr14	105167693:105168093:105169441:105169557:105169631:105169791,	105169442	105169557	105169480	105169480	Frame_Shift_Del	T	-	p.F144fs
LIHC	TCGA-DD-A1EG-01	AKT1	ENST00000544168.1,ENST00000554848.1,ENST00000402615.2,ENST00000407796.2,ENST00000555458.1,ENST00000554581.1,ENST00000554585.1,ENST00000349310.3,ENST00000555528.1,ENST00000553506.1	chr14	105238701:105238789:105239214:105239429:105239587:105239651,	105239215	105239429	105239385	105239385	Frame_Shift_Del	C	-	p.G334fs
LIHC	TCGA-DD-A1EG-01	JAG2	ENST00000347004.2,ENST00000331782.3	chr14	105617619:105617733:105617962:105618076:105618274:105618394,	105617963	105618076	105617976	105617976	Frame_Shift_Del	G	-	p.P380fs
LIHC	TCGA-DD-A1EG-01	PACS2	ENST00000547217.1	chr14	105814829:105814917:105821388:105821514:105833549:105833587,	105821389	105821514	105821398	105821398	Frame_Shift_Del	T	-	p.F103fs
LIHC	TCGA-DD-A1EG-01	PACS2	ENST00000430725.2,ENST00000547217.1,ENST00000551692.1,ENST00000325438.8	chr14	105848250:105848383:105848813:105848918:105849143:105849250,	105848814	105848918	105848878	105848878	Frame_Shift_Del	A	-	p.E493fs
LIHC	TCGA-DD-A1EG-01	ATP10A	ENST00000356865.6,ENST00000555815.1	chr15	25924745:25925121:25925267:25925455:25925956:25926061,	25925268	25925455	25925415	25925415	Frame_Shift_Del	A	-	p.L1240fs
LIHC	TCGA-DD-A1EG-01	OCA2	ENST00000445578.1,ENST00000382996.2,ENST00000354638.3	chr15	28277210:28277309:28326793:28327041:28344369:28344442,	28326794	28327041	28326858	28326858	Frame_Shift_Del	C	-	p.A56fs
LIHC	TCGA-DD-A1EG-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346252	29346252	Frame_Shift_Del	C	-	p.S55fs
LIHC	TCGA-DD-A1EG-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346583	29346583	Frame_Shift_Del	C	-	p.P166fs
LIHC	TCGA-DD-A1EG-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000561069.1	chr15	29385283:29385423:29386480:29386516:29390692:29390779,	29386481	29386516	29386488	29386488	Frame_Shift_Del	A	-	p.Q408fs
LIHC	TCGA-DD-A1EG-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30000847	30000847	Frame_Shift_Del	C	-	p.G1589fs
LIHC	TCGA-DD-A1EG-01	FAN1	ENST00000565280.1,ENST00000362065.4	chr15	31200320:31200461:31202816:31203018:31206060:31206294,	31202817	31203018	31202945	31202945	Frame_Shift_Del	A	-	p.K502fs
LIHC	TCGA-DD-A1EG-01	MTMR10	ENST00000435680.1,ENST00000567567.1,ENST00000425768.1,ENST00000565728.1,ENST00000568604.1,ENST00000563714.1	chr15	31267133:31267206:31269021:31269158:31282979:31283040,	31269022	31269158	31269130	31269130	Frame_Shift_Del	A	-	p.F50fs
LIHC	TCGA-DD-A1EG-01	TRPM1	ENST00000560658.1,ENST00000558768.1,ENST00000560801.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31358278:31358450:31359265:31359390:31360081:31360268,	31359266	31359390	31359370	31359370	Frame_Shift_Del	C	-	p.D189fs
LIHC	TCGA-DD-A1EG-01	FMN1	ENST00000559047.1,ENST00000334528.9	chr15	33260914:33261678:33300214:33300276:33445248:33447115,33260914:33261678:33300214:33300276:33357157:33357275,	33300215	33300276	33300236	33300236	Frame_Shift_Del	T	-	p.K511fs
LIHC	TCGA-DD-A1EG-01	FMN1	ENST00000559047.1	chr15	33300214:33300276:33357157:33357275:33380999:33381175,	33357158	33357275	33357183	33357183	Frame_Shift_Del	T	-	p.K489fs
LIHC	TCGA-DD-A1EG-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34048506:34048574:34049675:34049797:34060858:34060908,	34049676	34049797	34049780	34049780	Frame_Shift_Del	G	-	p.E2896fs
LIHC	TCGA-DD-A1EG-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34445148	34445148	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A1EG-01	LPCAT4	ENST00000566581.1,ENST00000314891.6	chr15	34656394:34656507:34657208:34657429:34657759:34657902,	34657209	34657429	34657292	34657292	Frame_Shift_Del	A	-	p.F133fs
LIHC	TCGA-DD-A1EG-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35224518:35224635:35226771:35226836:35230937:35231014,	35226772	35226836	35226797	35226797	Frame_Shift_Del	A	-	p.F253fs
LIHC	TCGA-DD-A1EG-01	RASGRP1	ENST00000559830.1,ENST00000558432.1,ENST00000558164.1,ENST00000310803.5,ENST00000450598.2,ENST00000561180.1,ENST00000539159.1	chr15	38792303:38792340:38793343:38793488:38794512:38794622,	38793344	38793488	38793364	38793364	Frame_Shift_Del	A	-	p.C555fs
LIHC	TCGA-DD-A1EG-01	RASGRP1	ENST00000559830.1,ENST00000558432.1,ENST00000558164.1,ENST00000310803.5,ENST00000450598.2,ENST00000561180.1,ENST00000539159.1	chr15	38792303:38792340:38793343:38793488:38794512:38794622,	38793344	38793488	38793407	38793407	Frame_Shift_Del	A	-	p.F540fs
LIHC	TCGA-DD-A1EG-01	THBS1	ENST00000260356.5	chr15	39880321:39880419:39880726:39880900:39881159:39881287,	39880727	39880900	39880739	39880739	Frame_Shift_Del	G	-	p.W495fs
LIHC	TCGA-DD-A1EG-01	THBS1	ENST00000260356.5	chr15	39885597:39885869:39886299:39886397:39886501:39886641,	39886300	39886397	39886389	39886389	Frame_Shift_Del	T	-	p.G1119fs
LIHC	TCGA-DD-A1EG-01	BMF	ENST00000354670.4,ENST00000397573.1,ENST00000561360.1,ENST00000561282.1	chr15	40383991:40384089:40396380:40396541:40397995:40398287,	40396381	40396541	40396482	40396482	Frame_Shift_Del	C	-	p.E118fs
LIHC	TCGA-DD-A1EG-01	BMF	ENST00000431415.3	chr15	40383991:40384089:40396443:40396541:40397995:40398287,	40396444	40396541	40396482	40396482	Frame_Shift_Del	C	-	p.E118fs
LIHC	TCGA-DD-A1EG-01	DISP2	ENST00000267889.3	chr15	40657038:40657154:40657347:40657475:40657828:40657895,	40657348	40657475	40657468	40657468	Frame_Shift_Del	C	-	p.G280fs
LIHC	TCGA-DD-A1EG-01	SPINT1	ENST00000344051.4	chr15	41145746:41145825:41145908:41146127:41146257:41146284,	41145909	41146127	41146120	41146120	Frame_Shift_Del	C	-	p.F318fs
LIHC	TCGA-DD-A1EG-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41384224:41384380:41387798:41387866:41387956:41388126,	41387799	41387866	41387842	41387842	Frame_Shift_Del	A	-	p.L113fs
LIHC	TCGA-DD-A1EG-01	CHP1	ENST00000560784.1,ENST00000392151.2,ENST00000334660.5,ENST00000560397.1	chr15	41523501:41523647:41535864:41535937:41549107:41549188,	41535865	41535937	41535868	41535868	Frame_Shift_Del	C	-	p.S24fs
LIHC	TCGA-DD-A1EG-01	NUSAP1	ENST00000560318.1	chr15	41657628:41657787:41663724:41663882:41669393:41669470,41657628:41657787:41663724:41663882:41667909:41667949,41658013:41658061:41663724:41663882:41667909:41667949,	41663725	41663882	41663810	41663810	Frame_Shift_Del	G	-	p.G298fs
LIHC	TCGA-DD-A1EG-01	LTK	ENST00000453182.2	chr15	41799292:41799488:41799759:41799855:41800266:41800419,41799292:41799372:41799759:41799855:41800266:41800419,	41799760	41799855	41799772	41799772	Frame_Shift_Del	C	-	p.V445fs
LIHC	TCGA-DD-A1EG-01	LTK	ENST00000561619.1	chr15	41799292:41799488:41799711:41799855:41800266:41800419,	41799712	41799855	41799772	41799772	Frame_Shift_Del	C	-	p.V445fs
LIHC	TCGA-DD-A1EG-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961239	41961239	Frame_Shift_Del	T	-	p.A49fs
LIHC	TCGA-DD-A1EG-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961559	41961559	Frame_Shift_Del	T	-	p.V156fs
LIHC	TCGA-DD-A1EG-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42002888:42003547:42005348:42005694:42019377:42019604,	42005349	42005694	42005538	42005538	Frame_Shift_Del	G	-	p.G1093fs
LIHC	TCGA-DD-A1EG-01	MGA	ENST00000545763.1,ENST00000566586.1	chr15	42028378:42028896:42032250:42032401:42040834:42040910,	42032251	42032401	42032302	42032302	Frame_Shift_Del	C	-	p.P1496fs
LIHC	TCGA-DD-A1EG-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000568255.1,ENST00000570161.1,ENST00000389936.4	chr15	42052520:42052727:42053936:42054048:42054326:42054395,	42053937	42054048	42053976	42053976	Frame_Shift_Del	A	-	p.K2480fs
LIHC	TCGA-DD-A1EG-01	SPTBN5	ENST00000320955.6	chr15	42151087:42151178:42152783:42152956:42153616:42153694,	42152784	42152956	42152848	42152848	Frame_Shift_Del	G	-	p.L2642fs
LIHC	TCGA-DD-A1EG-01	SPTBN5	ENST00000320955.6	chr15	42169006:42169146:42169313:42169554:42170539:42170827,	42169314	42169554	42169520	42169520	Frame_Shift_Del	C	-	p.A1170fs
LIHC	TCGA-DD-A1EG-01	VPS39	ENST00000348544.4,ENST00000318006.5	chr15	42459591:42459735:42461921:42462064:42465920:42466050,	42461922	42462064	42462046	42462046	Frame_Shift_Del	C	-	p.G370fs
LIHC	TCGA-DD-A1EG-01	TMEM87A	ENST00000389834.4,ENST00000562946.1,ENST00000563371.1,ENST00000569075.1,ENST00000561578.1,ENST00000448392.1,ENST00000568400.1	chr15	42531867:42531929:42536247:42536365:42553155:42553200,	42536248	42536365	42536271	42536271	Frame_Shift_Del	T	-	p.N200fs
LIHC	TCGA-DD-A1EG-01	TMEM87A	ENST00000307216.6,ENST00000562946.1	chr15	42560144:42560230:42564260:42564321:42565452:42565513,	42564261	42564321	42564301	42564301	Frame_Shift_Del	A	-	p.F55fs
LIHC	TCGA-DD-A1EG-01	CAPN3	ENST00000349748.3,ENST00000397163.3,ENST00000318023.7,ENST00000357568.3,ENST00000356316.3	chr15	42676680:42676750:42678364:42678483:42679950:42680084,	42678365	42678483	42678455	42678455	Frame_Shift_Del	A	-	p.E157fs
LIHC	TCGA-DD-A1EG-01	CAPN3	ENST00000349748.3	chr15	42679950:42680084:42681125:42681294:42684836:42684920,	42681126	42681294	42681272	42681272	Frame_Shift_Del	C	-	p.S260fs
LIHC	TCGA-DD-A1EG-01	ZNF106	ENST00000263805.4,ENST00000565611.1,ENST00000565500.1,ENST00000565380.1	chr15	42707937:42709558:42710002:42710149:42713258:42713330,	42710003	42710149	42710109	42710109	Frame_Shift_Del	A	-	p.L1830fs
LIHC	TCGA-DD-A1EG-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742591	42742591	Frame_Shift_Del	T	-	p.I604fs
LIHC	TCGA-DD-A1EG-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742791	42742791	Frame_Shift_Del	T	-	p.K537fs
LIHC	TCGA-DD-A1EG-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42744097	42744097	Frame_Shift_Del	G	-	p.Q102fs
LIHC	TCGA-DD-A1EG-01	SNAP23	ENST00000567094.1,ENST00000566035.1,ENST00000249647.3,ENST00000568331.1,ENST00000564153.1,ENST00000349777.1	chr15	42787875:42787911:42804030:42804101:42805152:42805194,	42804031	42804101	42804067	42804067	Frame_Shift_Del	A	-	p.E8fs
LIHC	TCGA-DD-A1EG-01	CDAN1	ENST00000356231.3,ENST00000562465.1	chr15	43020401:43020465:43020849:43021008:43021220:43021324,	43020850	43021008	43020928	43020928	Frame_Shift_Del	C	-	p.G909fs
LIHC	TCGA-DD-A1EG-01	TTBK2	ENST00000267890.6,ENST00000567274.1,ENST00000567840.1	chr15	43075616:43075833:43086841:43086999:43102811:43102937,	43086842	43086999	43086917	43086917	Frame_Shift_Del	T	-	p.N302fs
LIHC	TCGA-DD-A1EG-01	TTBK2	ENST00000267890.6,ENST00000567840.1	chr15	43109229:43109295:43120125:43120230:43122135:43122276,	43120126	43120230	43120189	43120189	Frame_Shift_Del	T	-	p.K158fs
LIHC	TCGA-DD-A1EG-01	UBR1	ENST00000382177.2,ENST00000290650.4	chr15	43290389:43290463:43294752:43294902:43296034:43296128,	43294753	43294902	43294785	43294785	Frame_Shift_Del	G	-	p.P1209fs
LIHC	TCGA-DD-A1EG-01	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43348541:43348640:43350538:43350627:43351282:43351390,	43350539	43350627	43350584	43350584	Frame_Shift_Del	A	-	p.F379fs
LIHC	TCGA-DD-A1EG-01	TMEM62	ENST00000563859.1,ENST00000260403.2,ENST00000569369.1	chr15	43461790:43461875:43470804:43470909:43473378:43473497,	43470805	43470909	43470855	43470855	Frame_Shift_Del	A	-	p.K478fs
LIHC	TCGA-DD-A1EG-01	ZSCAN29	ENST00000566849.1	chr15	43653270:43654139:43656112:43656685:43658307:43658972,	43656113	43656685	43656160	43656160	Frame_Shift_Del	G	-	p.P548fs
LIHC	TCGA-DD-A1EG-01	ZSCAN29	ENST00000396976.2	chr15	43653270:43654139:43656112:43656580:43658307:43658972,	43656113	43656580	43656160	43656160	Frame_Shift_Del	G	-	p.P548fs
LIHC	TCGA-DD-A1EG-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000565548.1,ENST00000564079.1,ENST00000399460.3	chr15	43694015:43694048:43695880:43695997:43696610:43696750,	43695881	43695997	43695922	43695922	Frame_Shift_Del	T	-	p.S591fs
LIHC	TCGA-DD-A1EG-01	TUBGCP4	ENST00000566251.1	chr15	43694015:43694048:43695880:43696040:43696610:43696750,	43695881	43696040	43695922	43695922	Frame_Shift_Del	T	-	p.S591fs
LIHC	TCGA-DD-A1EG-01	STRC	ENST00000440125.1,ENST00000450892.2,ENST00000471703.1,ENST00000541030.1,ENST00000485556.1	chr15	43893593:43893749:43895439:43895609:43896193:43896350,	43895440	43895609	43895443	43895443	Frame_Shift_Del	T	-	p.K1514fs
LIHC	TCGA-DD-A1EG-01	WDR76	ENST00000381246.2,ENST00000263795.6	chr15	44149143:44149361:44150868:44151021:44153530:44153584,	44150869	44151021	44150965	44150965	Frame_Shift_Del	T	-	p.Y502fs
LIHC	TCGA-DD-A1EG-01	CTDSPL2	ENST00000558373.1,ENST00000396780.1,ENST00000558966.1,ENST00000260327.4	chr15	44806795:44806858:44806962:44807042:44811366:44811493,	44806963	44807042	44806970	44806970	Frame_Shift_Del	T	-	p.L347fs
LIHC	TCGA-DD-A1EG-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44903037:44903183:44905627:44905734:44907560:44907764,	44905628	44905734	44905698	44905698	Frame_Shift_Del	T	-	p.K1025fs
LIHC	TCGA-DD-A1EG-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44907625:44907764:44912387:44912601:44913956:44914132,	44912388	44912601	44912467	44912467	Frame_Shift_Del	G	-	p.L920fs
LIHC	TCGA-DD-A1EG-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44913956:44914132:44914417:44914545:44914925:44914997,	44914418	44914545	44914460	44914460	Frame_Shift_Del	A	-	p.L801fs
LIHC	TCGA-DD-A1EG-01	DUOX1	ENST00000561220.2	chr15	45433489:45433608:45434125:45434310:45435387:45435501,	45434126	45434310	45434249	45434249	Frame_Shift_Del	T	-	p.Y587fs
LIHC	TCGA-DD-A1EG-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3	chr15	45433489:45433608:45434172:45434310:45435387:45435501,	45434173	45434310	45434249	45434249	Frame_Shift_Del	T	-	p.Y587fs
LIHC	TCGA-DD-A1EG-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000561220.2	chr15	45437092:45437278:45439630:45439856:45440101:45440195,	45439631	45439856	45439748	45439748	Frame_Shift_Del	A	-	p.K814fs
LIHC	TCGA-DD-A1EG-01	DUOX1	ENST00000557893.1,ENST00000321429.4,ENST00000558446.1,ENST00000561166.1,ENST00000389037.3,ENST00000561220.2	chr15	45442829:45442899:45443320:45443446:45444071:45444079,	45443321	45443446	45443415	45443415	Frame_Shift_Del	C	-	p.P995fs
LIHC	TCGA-DD-A1EG-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000559716.2,ENST00000561220.2	chr15	45446148:45446198:45447999:45448127:45453034:45453188,	45448000	45448127	45448007	45448007	Frame_Shift_Del	G	-	p.T1194fs
LIHC	TCGA-DD-A1EG-01	SHF	ENST00000290894.8	chr15	45470362:45470504:45490969:45491318:45492924:45493069,	45490970	45491318	45491112	45491112	Frame_Shift_Del	T	-	p.N54fs
LIHC	TCGA-DD-A1EG-01	SLC28A2	ENST00000347644.3,ENST00000560438.1	chr15	45555258:45555442:45556078:45556220:45556852:45556881,	45556079	45556220	45556083	45556083	Frame_Shift_Del	T	-	p.F151fs
LIHC	TCGA-DD-A1EG-01	SLC30A4	ENST00000261867.4	chr15	45782925:45783079:45803335:45803482:45814161:45814434,	45803336	45803482	45803363	45803363	Frame_Shift_Del	T	-	p.R171fs
LIHC	TCGA-DD-A1EG-01	SLC12A1	ENST00000559641.1,ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48539533:48539657:48541771:48541873:48543811:48543967,	48541772	48541873	48541807	48541807	Frame_Shift_Del	T	-	p.F575fs
LIHC	TCGA-DD-A1EG-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577401	48577401	Frame_Shift_Del	A	-	p.K863fs
LIHC	TCGA-DD-A1EG-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48583974:48584061:48591336:48591472:48593511:48593579,	48591337	48591472	48591434	48591434	Frame_Shift_Del	A	-	p.K1020fs
LIHC	TCGA-DD-A1EG-01	FBN1	ENST00000561429.1,ENST00000316623.5,ENST00000559133.1	chr15	48703397:48703576:48704765:48704940:48707732:48707964,	48704766	48704940	48704791	48704791	Frame_Shift_Del	T	-	p.N2734fs
LIHC	TCGA-DD-A1EG-01	SHC4	ENST00000332408.4,ENST00000537958.1,ENST00000396535.3	chr15	49117975:49118323:49126965:49127219:49135605:49135785,	49126966	49127219	49127097	49127097	Frame_Shift_Del	C	-	p.A536fs
LIHC	TCGA-DD-A1EG-01	SHC4	ENST00000332408.4,ENST00000537958.1,ENST00000396535.3	chr15	49135605:49135785:49143384:49143445:49148149:49148321,	49143385	49143445	49143397	49143397	Frame_Shift_Del	T	-	p.S431fs
LIHC	TCGA-DD-A1EG-01	SECISBP2L	ENST00000380927.2,ENST00000261847.3,ENST00000559471.1	chr15	49320649:49320879:49325161:49325297:49327530:49327653,	49325162	49325297	49325195	49325195	Frame_Shift_Del	T	-	p.I211fs
LIHC	TCGA-DD-A1EG-01	GALK2	ENST00000559454.1,ENST00000544523.1,ENST00000560031.1,ENST00000559963.1,ENST00000327171.3,ENST00000559883.1,ENST00000560654.1,ENST00000396509.2,ENST00000558145.1,ENST00000560138.1	chr15	49493358:49493447:49509386:49509510:49528047:49528094,	49509387	49509510	49509467	49509467	Frame_Shift_Del	A	-	p.K64fs
LIHC	TCGA-DD-A1EG-01	FAM227B	ENST00000561319.1,ENST00000559905.1,ENST00000560246.1,ENST00000561064.1,ENST00000299338.6,ENST00000558615.1,ENST00000558594.1	chr15	49880212:49880280:49881972:49882204:49903411:49903465,	49881973	49882204	49882076	49882076	Frame_Shift_Del	A	-	p.F78fs
LIHC	TCGA-DD-A1EG-01	FAM227B	ENST00000561319.1,ENST00000559905.1,ENST00000560246.1,ENST00000561064.1,ENST00000299338.6,ENST00000558615.1,ENST00000558594.1	chr15	49880212:49880280:49881972:49882204:49903411:49903465,	49881973	49882204	49882136	49882136	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A1EG-01	ATP8B4	ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1	chr15	50215575:50215691:50223315:50223504:50226213:50226379,	50223316	50223504	50223331	50223331	Frame_Shift_Del	T	-	p.R543fs
LIHC	TCGA-DD-A1EG-01	HDC	ENST00000559190.1	chr15	50549621:50549744:50550600:50550714:50555431:50555512,50546726:50546861:50550600:50550714:50555431:50555512,	50550601	50550714	50550693	50550693	Frame_Shift_Del	G	-	p.H76fs
LIHC	TCGA-DD-A1EG-01	SPPL2A	ENST00000559527.1	chr15	51018517:51018574:51023161:51023236:51024799:51024881,51018517:51018574:51023161:51023236:51028297:51028399,	51023162	51023236	51023189	51023189	Frame_Shift_Del	A	-	p.F354fs
LIHC	TCGA-DD-A1EG-01	DMXL2	ENST00000543779.2,ENST00000561079.1,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51755575:51755693:51756871:51757073:51757762:51757848,	51756872	51757073	51756971	51756971	Frame_Shift_Del	G	-	p.P2569fs
LIHC	TCGA-DD-A1EG-01	DMXL2	ENST00000543779.2,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51758380:51758508:51763419:51763598:51766540:51766789,	51763420	51763598	51763465	51763465	Frame_Shift_Del	T	-	p.K2448fs
LIHC	TCGA-DD-A1EG-01	TMOD3	ENST00000308580.7,ENST00000544199.1	chr15	52155034:52155207:52161413:52161570:52179785:52179908,	52161414	52161570	52161549	52161549	Frame_Shift_Del	C	-	p.P88fs
LIHC	TCGA-DD-A1EG-01	MYO5A	ENST00000399231.3,ENST00000358212.6,ENST00000399233.2,ENST00000356338.6,ENST00000553916.1,ENST00000556196.1	chr15	52697483:52697590:52699488:52699596:52700255:52700333,	52699489	52699596	52699525	52699525	Frame_Shift_Del	C	-	p.E304fs
LIHC	TCGA-DD-A1EG-01	WDR72	ENST00000557913.1,ENST00000560036.1,ENST00000396328.1,ENST00000360509.5,ENST00000559418.1	chr15	54003532:54003678:54004968:54005088:54006630:54006704,	54004969	54005088	54004983	54004983	Frame_Shift_Del	A	-	p.S233fs
LIHC	TCGA-DD-A1EG-01	UNC13C	ENST00000545554.1,ENST00000260323.11,ENST00000561210.1,ENST00000537900.1	chr15	54624240:54624309:54625964:54626054:54630558:54630687,	54625965	54626054	54626040	54626040	Frame_Shift_Del	T	-	p.F1525fs
LIHC	TCGA-DD-A1EG-01	PIGB	ENST00000565502.1	chr15	55633935:55634000:55642896:55643001:55646995:55647176,	55642897	55643001	55642958	55642958	Frame_Shift_Del	A	-	p.S395fs
LIHC	TCGA-DD-A1EG-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55633935:55634000:55642896:55643110:55646995:55647176,	55642897	55643110	55642958	55642958	Frame_Shift_Del	A	-	p.S395fs
LIHC	TCGA-DD-A1EG-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652876	55652876	Frame_Shift_Del	T	-	p.K365fs
LIHC	TCGA-DD-A1EG-01	NEDD4	ENST00000514893.1,ENST00000506154.1,ENST00000435532.3,ENST00000502612.1,ENST00000507063.1,ENST00000508342.1	chr15	56161776:56161879:56164612:56164674:56166155:56166206,	56164613	56164674	56164667	56164667	Frame_Shift_Del	T	-	p.N536fs
LIHC	TCGA-DD-A1EG-01	NEDD4	ENST00000513957.1,ENST00000435532.3	chr15	56243573:56243612:56243708:56243787:56258670:56258744,	56243709	56243787	56243720	56243720	Frame_Shift_Del	T	-	p.T63fs
LIHC	TCGA-DD-A1EG-01	TEX9	ENST00000352903.2,ENST00000537232.1,ENST00000558083.2,ENST00000561221.2	chr15	56681515:56681598:56683440:56683616:56686362:56686445,	56683441	56683616	56683584	56683584	Frame_Shift_Del	T	-	p.I105fs
LIHC	TCGA-DD-A1EG-01	ZNF280D	ENST00000267807.7,ENST00000560002.1,ENST00000559237.1,ENST00000559000.1	chr15	56946582:56946701:56950621:56950684:56958592:56958733,	56950622	56950684	56950645	56950645	Frame_Shift_Del	A	-	p.F665fs
LIHC	TCGA-DD-A1EG-01	ZNF280D	ENST00000267807.7,ENST00000560002.1,ENST00000396245.1,ENST00000559237.1,ENST00000558002.1,ENST00000559000.1	chr15	56985295:56985413:56993130:56993270:56993370:56993436,	56993131	56993270	56993216	56993216	Frame_Shift_Del	T	-	p.N86fs
LIHC	TCGA-DD-A1EG-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58458871:58458998:58465266:58465404:58467116:58467235,	58465267	58465404	58465280	58465280	Frame_Shift_Del	C	-	p.N84fs
LIHC	TCGA-DD-A1EG-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58465266:58465404:58467116:58467235:58471326:58471544,	58467117	58467235	58467142	58467142	Frame_Shift_Del	A	-	p.G134fs
LIHC	TCGA-DD-A1EG-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58467116:58467235:58471326:58471544:58476159:58476639,	58471327	58471544	58471368	58471368	Frame_Shift_Del	C	-	p.I179fs
LIHC	TCGA-DD-A1EG-01	CCNB2	ENST00000561077.1	chr15	59397355:59397491:59399520:59399869:59406642:59406813,	59399521	59399869	59399597	59399597	Frame_Shift_Del	T	-	p.V34fs
LIHC	TCGA-DD-A1EG-01	MYO1E	ENST00000559489.1,ENST00000288235.4	chr15	59502712:59502799:59506426:59506513:59506838:59506919,	59506427	59506513	59506454	59506454	Frame_Shift_Del	A	-	p.F416fs
LIHC	TCGA-DD-A1EG-01	MYO1E	ENST00000559489.1,ENST00000288235.4	chr15	59502712:59502799:59506426:59506513:59506838:59506919,	59506427	59506513	59506469	59506469	Frame_Shift_Del	T	-	p.K411fs
LIHC	TCGA-DD-A1EG-01	FAM81A	ENST00000288228.5	chr15	59806487:59806623:59808843:59809039:59813452:59815748,	59808844	59809039	59808917	59808917	Frame_Shift_Del	A	-	p.Q287fs
LIHC	TCGA-DD-A1EG-01	ANXA2	ENST00000421017.2,ENST00000396024.3,ENST00000451270.2,ENST00000560014.1,ENST00000332680.4	chr15	60639865:60639888:60641273:60641396:60643391:60643450,	60641274	60641396	60641343	60641343	Frame_Shift_Del	T	-	p.E297fs
LIHC	TCGA-DD-A1EG-01	VPS13C	ENST00000261517.5,ENST00000249837.3	chr15	62148484:62148608:62155638:62155727:62160857:62160972,	62155639	62155727	62155714	62155714	Frame_Shift_Del	T	-	p.K3626fs
LIHC	TCGA-DD-A1EG-01	HERC1	ENST00000443617.2,ENST00000561400.1	chr15	64004973:64005094:64005551:64005864:64008500:64008672,	64005552	64005864	64005567	64005567	Frame_Shift_Del	C	-	p.G1484fs
LIHC	TCGA-DD-A1EG-01	SNX1	ENST00000560260.1	chr15	64415701:64415745:64418277:64418419:64419372:64419451,64404771:64404883:64418277:64418419:64419372:64419451,	64418278	64418419	64418316	64418316	Frame_Shift_Del	A	-	p.V183fs
LIHC	TCGA-DD-A1EG-01	TRIP4	ENST00000557834.1	chr15	64680060:64680247:64686205:64686314:64687596:64687730,	64686206	64686314	64686305	64686305	Frame_Shift_Del	A	-	p.K89fs
LIHC	TCGA-DD-A1EG-01	TRIP4	ENST00000261884.3	chr15	64717738:64717830:64737204:64737307:64747195:64747435,	64737205	64737307	64737242	64737242	Frame_Shift_Del	T	-	p.V538fs
LIHC	TCGA-DD-A1EG-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966717	64966717	Frame_Shift_Del	A	-	p.Q555fs
LIHC	TCGA-DD-A1EG-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966836	64966836	Frame_Shift_Del	G	-	p.G595fs
LIHC	TCGA-DD-A1EG-01	PIF1	ENST00000559239.1,ENST00000268043.4,ENST00000333425.6	chr15	65110455:65110543:65111315:65111422:65113180:65113287,65110455:65110543:65111315:65111422:65112045:65112185,	65111316	65111422	65111369	65111369	Frame_Shift_Del	G	-	p.L463fs
LIHC	TCGA-DD-A1EG-01	PIF1	ENST00000559239.1,ENST00000268043.4,ENST00000333425.6	chr15	65112045:65112218:65113180:65113287:65113365:65113480,65112045:65112185:65113180:65113287:65113365:65113480,	65113181	65113287	65113227	65113227	Frame_Shift_Del	C	-	p.A383fs
LIHC	TCGA-DD-A1EG-01	PARP16	ENST00000261888.6	chr15	65555486:65555658:65558899:65559106:65563272:65563410,	65558900	65559106	65559041	65559041	Frame_Shift_Del	A	-	p.F126fs
LIHC	TCGA-DD-A1EG-01	SLC24A1	ENST00000399033.4	chr15	65944007:65944097:65944979:65945146:65952616:65952676,65942719:65943280:65944979:65945146:65946167:65946417,	65944980	65945146	65945144	65945144	Frame_Shift_Del	G	-	p.V1016fs
LIHC	TCGA-DD-A1EG-01	MEGF11	ENST00000490495.1,ENST00000360698.4	chr15	66208485:66208614:66208935:66209294:66210303:66210432,	66208936	66209294	66209281	66209281	Frame_Shift_Del	C	-	p.G700fs
LIHC	TCGA-DD-A1EG-01	MEGF11	ENST00000288745.3,ENST00000395614.1,ENST00000409699.2,ENST00000395625.2,ENST00000422354.1	chr15	66208485:66208614:66209165:66209294:66210303:66210432,	66209166	66209294	66209281	66209281	Frame_Shift_Del	C	-	p.G700fs
LIHC	TCGA-DD-A1EG-01	MAP2K1	ENST00000307102.5,ENST00000566326.1	chr15	66779565:66779630:66781552:66781614:66782055:66782101,	66781553	66781614	66781592	66781592	Frame_Shift_Del	T	-	p.F334fs
LIHC	TCGA-DD-A1EG-01	MAP2K1	ENST00000307102.5,ENST00000566326.1	chr15	66781552:66781614:66782055:66782101:66782839:66783681,	66782056	66782101	66782086	66782086	Frame_Shift_Del	T	-	p.D351fs
LIHC	TCGA-DD-A1EG-01	SMAD3	ENST00000537194.2,ENST00000540846.2,ENST00000327367.4,ENST00000439724.3	chr15	67473578:67473791:67477064:67477202:67479702:67479785,	67477065	67477202	67477131	67477131	Frame_Shift_Del	T	-	p.I313fs
LIHC	TCGA-DD-A1EG-01	IQCH	ENST00000535744.1	chr15	67636400:67636529:67649682:67649759:67664448:67664508,	67649683	67649759	67649687	67649687	Frame_Shift_Del	T	-	p.T214fs
LIHC	TCGA-DD-A1EG-01	IQCH	ENST00000358767.3,ENST00000360277.4,ENST00000514049.1,ENST00000546225.1	chr15	67687628:67687901:67692451:67692643:67709268:67709389,67681168:67681344:67692451:67692643:67709268:67709389,	67692452	67692643	67692512	67692512	Frame_Shift_Del	A	-	p.K656fs
LIHC	TCGA-DD-A1EG-01	MAP2K5	ENST00000340972.4,ENST00000354498.5,ENST00000558392.1,ENST00000395476.2,ENST00000178640.5	chr15	67956934:67956983:67984816:67984890:67985855:67985906,	67984817	67984890	67984825	67984825	Frame_Shift_Del	C	-	p.P286fs
LIHC	TCGA-DD-A1EG-01	MAP2K5	ENST00000395476.2	chr15	68020253:68020283:68040568:68040595:68040906:68040939,67995695:67995746:68040568:68040595:68040906:68040939,	68040569	68040595	68040583	68040583	Frame_Shift_Del	G	-	p.Q363fs
LIHC	TCGA-DD-A1EG-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68457068:68457142:68466069:68466230:68467974:68468105,	68466070	68466230	68466143	68466143	Frame_Shift_Del	T	-	p.L363fs
LIHC	TCGA-DD-A1EG-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68468875:68468992:68473549:68473692:68475967:68476005,	68473550	68473692	68473661	68473661	Frame_Shift_Del	C	-	p.F533fs
LIHC	TCGA-DD-A1EG-01	ITGA11	ENST00000315757.7,ENST00000423218.2	chr15	68606116:68606206:68607988:68608065:68609602:68609701,	68607989	68608065	68608056	68608056	Frame_Shift_Del	G	-	p.R909fs
LIHC	TCGA-DD-A1EG-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331268	69331268	Frame_Shift_Del	C	-	p.I463fs
LIHC	TCGA-DD-A1EG-01	TLE3	ENST00000558201.1,ENST00000558379.1,ENST00000558939.1,ENST00000557919.1,ENST00000560525.1,ENST00000560589.1,ENST00000557907.1,ENST00000451782.2,ENST00000561453.1,ENST00000557997.1,ENST00000440567.3,ENST00000317509.8	chr15	70356792:70356809:70358352:70358557:70366871:70366934,	70358353	70358557	70358457	70358457	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A1EG-01	TLE3	ENST00000559048.1,ENST00000560939.1	chr15	70356792:70356809:70358352:70358554:70366871:70366934,	70358353	70358554	70358457	70358457	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A1EG-01	UACA	ENST00000539319.1	chr15	70987355:70987444:70991865:70991999:71055668:71055769,	70991866	70991999	70991908	70991908	Frame_Shift_Del	T	-	p.K57fs
LIHC	TCGA-DD-A1EG-01	LRRC49	ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558137.1,ENST00000560107.2,ENST00000559670.1,ENST00000561081.1,ENST00000260382.5,ENST00000443425.2	chr15	71196890:71197094:71203870:71203937:71211388:71211532,	71203871	71203937	71203901	71203901	Frame_Shift_Del	A	-	p.L177fs
LIHC	TCGA-DD-A1EG-01	THSD4	ENST00000567838.1,ENST00000357769.4,ENST00000355327.3,ENST00000261862.6,ENST00000567745.1	chr15	72020887:72021063:72023459:72023556:72030070:72030346,	72023460	72023556	72023528	72023528	Frame_Shift_Del	C	-	p.S534fs
LIHC	TCGA-DD-A1EG-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190431	72190431	Frame_Shift_Del	T	-	p.K1471fs
LIHC	TCGA-DD-A1EG-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190457	72190457	Frame_Shift_Del	T	-	p.T1463fs
LIHC	TCGA-DD-A1EG-01	BBS4	ENST00000569338.1,ENST00000268057.4,ENST00000565160.1,ENST00000561914.1	chr15	72978857:72978905:72987517:72987569:73002040:73002120,72978577:72978592:72987517:72987569:73002040:73002120,	72987518	72987569	72987549	72987549	Frame_Shift_Del	A	-	p.Q19fs
LIHC	TCGA-DD-A1EG-01	ADPGK	ENST00000569534.1,ENST00000567941.1,ENST00000311669.8	chr15	73047976:73047995:73048591:73048788:73052747:73052868,	73048592	73048788	73048766	73048766	Frame_Shift_Del	T	-	p.K222fs
LIHC	TCGA-DD-A1EG-01	NEO1	ENST00000261908.6,ENST00000560262.1,ENST00000560328.1,ENST00000339362.5,ENST00000560808.1,ENST00000558964.1	chr15	73590688:73590952:73593661:73593798:73594953:73595059,	73593662	73593798	73593698	73593698	Frame_Shift_Del	C	-	p.S1401fs
LIHC	TCGA-DD-A1EG-01	NPTN	ENST00000563691.1,ENST00000287226.8,ENST00000545878.1	chr15	73884348:73884478:73889362:73889710:73925465:73925562,	73889363	73889710	73889436	73889436	Frame_Shift_Del	G	-	p.P122fs
LIHC	TCGA-DD-A1EG-01	LOXL1	ENST00000261921.7,ENST00000566011.1	chr15	74235194:74235303:74238757:74238895:74239407:74239564,	74238758	74238895	74238851	74238851	Frame_Shift_Del	C	-	p.L435fs
LIHC	TCGA-DD-A1EG-01	CYP11A1	ENST00000566674.1,ENST00000268053.6,ENST00000450547.1,ENST00000358632.4,ENST00000435365.1	chr15	74636196:74636333:74637384:74637584:74640240:74640396,	74637385	74637584	74637421	74637421	Frame_Shift_Del	C	-	p.D39fs
LIHC	TCGA-DD-A1EG-01	CYP11A1	ENST00000566674.1,ENST00000268053.6,ENST00000450547.1,ENST00000358632.4,ENST00000435365.1	chr15	74636196:74636333:74637384:74637584:74640240:74640396,	74637385	74637584	74637502	74637502	Frame_Shift_Del	G	-	p.L13fs
LIHC	TCGA-DD-A1EG-01	SEMA7A	ENST00000261918.4,ENST00000543145.2,ENST00000542748.1	chr15	74706887:74707086:74707178:74707287:74708141:74708326,	74707179	74707287	74707202	74707202	Frame_Shift_Del	G	-	p.L358fs
LIHC	TCGA-DD-A1EG-01	SEMA7A	ENST00000261918.4,ENST00000543145.2,ENST00000542748.1	chr15	74706887:74707086:74707178:74707287:74708141:74708326,	74707179	74707287	74707241	74707241	Frame_Shift_Del	C	-	p.V345fs
LIHC	TCGA-DD-A1EG-01	ARID3B	ENST00000346246.5	chr15	74882160:74882344:74883491:74883775:74883900:74884155,	74883492	74883775	74883542	74883542	Frame_Shift_Del	C	-	p.S311fs
LIHC	TCGA-DD-A1EG-01	CLK3	ENST00000569406.1,ENST00000352989.5,ENST00000562078.1,ENST00000395066.3,ENST00000454830.2,ENST00000348245.3,ENST00000483723.1,ENST00000345005.4,ENST00000564468.1	chr15	74920944:74921024:74921282:74921373:74922047:74922303,	74921283	74921373	74921350	74921350	Frame_Shift_Del	A	-	p.K573fs
LIHC	TCGA-DD-A1EG-01	ULK3	ENST00000566631.1,ENST00000568273.1,ENST00000561725.1,ENST00000440863.2,ENST00000570276.1,ENST00000568667.1,ENST00000568210.1,ENST00000569437.1	chr15	75130097:75130139:75130492:75130533:75130606:75130685,	75130493	75130533	75130524	75130524	Frame_Shift_Del	G	-	p.P419fs
LIHC	TCGA-DD-A1EG-01	SCAMP2	ENST00000268099.9,ENST00000569251.1,ENST00000563829.1,ENST00000569904.1	chr15	75137546:75137558:75137813:75137934:75140940:75140986,	75137814	75137934	75137849	75137849	Frame_Shift_Del	G	-	p.L274fs
LIHC	TCGA-DD-A1EG-01	COMMD4	ENST00000564815.1	chr15	75628424:75628433:75630402:75630474:75630695:75630715,75628445:75628562:75630402:75630474:75630695:75630715,75628424:75628433:75630402:75630474:75630986:75631025,	75630403	75630474	75630440	75630440	Frame_Shift_Del	G	-	p.W14fs
LIHC	TCGA-DD-A1EG-01	COMMD4	ENST00000565517.1	chr15	75628424:75628433:75630402:75630479:75630695:75630715,	75630403	75630479	75630440	75630440	Frame_Shift_Del	G	-	p.W14fs
LIHC	TCGA-DD-A1EG-01	COMMD4	ENST00000566230.1,ENST00000567399.1	chr15	75628424:75628433:75630402:75630761:75630986:75631025,	75630403	75630761	75630440	75630440	Frame_Shift_Del	G	-	p.W14fs
LIHC	TCGA-DD-A1EG-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75672969:75673064:75673953:75674046:75676604:75676778,	75673954	75674046	75673983	75673983	Frame_Shift_Del	C	-	p.E1087fs
LIHC	TCGA-DD-A1EG-01	SNUPN	ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75893478:75893559:75897490:75897568:75899556:75899654,	75897491	75897568	75897505	75897505	Frame_Shift_Del	T	-	p.T264fs
LIHC	TCGA-DD-A1EG-01	FBXO22	ENST00000453211.2,ENST00000540507.1,ENST00000569022.1,ENST00000308275.3,ENST00000561885.1,ENST00000569054.1	chr15	76196831:76196970:76209570:76209735:76222224:76222390,76206454:76206546:76209570:76209735:76222224:76222390,	76209571	76209735	76209581	76209581	Frame_Shift_Del	G	-	p.M158fs
LIHC	TCGA-DD-A1EG-01	ETFA	ENST00000560044.1,ENST00000557943.1,ENST00000267950.8,ENST00000559602.1,ENST00000560899.1,ENST00000560816.1,ENST00000433983.2,ENST00000560726.1,ENST00000559758.1,ENST00000559973.1,ENST00000559075.1	chr15	76566823:76566835:76576097:76576166:76577977:76578079,	76576098	76576166	76576121	76576121	Frame_Shift_Del	A	-	p.L237fs
LIHC	TCGA-DD-A1EG-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1	chr15	76646289:76646481:76668502:76668652:76673718:76673956,	76668503	76668652	76668550	76668550	Frame_Shift_Del	C	-	p.V1024fs
LIHC	TCGA-DD-A1EG-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76696864:76697020:76726418:76726651:76763552:76763676,	76726419	76726651	76726445	76726445	Frame_Shift_Del	A	-	p.F849fs
LIHC	TCGA-DD-A1EG-01	SCAPER	ENST00000324767.7,ENST00000565507.1,ENST00000538941.2,ENST00000565970.1,ENST00000564590.1,ENST00000563290.1,ENST00000303521.6	chr15	77025569:77025725:77046148:77046289:77057301:77057413,	77046149	77046289	77046224	77046224	Frame_Shift_Del	T	-	p.K351fs
LIHC	TCGA-DD-A1EG-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425963	77425963	Frame_Shift_Del	G	-	p.P1154fs
LIHC	TCGA-DD-A1EG-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77471654	77471654	Frame_Shift_Del	G	-	p.P873fs
LIHC	TCGA-DD-A1EG-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77473383	77473383	Frame_Shift_Del	G	-	p.L296fs
LIHC	TCGA-DD-A1EG-01	IDH3A	ENST00000558554.1,ENST00000559803.1,ENST00000558933.1,ENST00000558509.1,ENST00000299518.2,ENST00000441490.2	chr15	78441750:78441772:78447554:78447617:78452433:78452548,78441750:78441772:78447554:78447617:78449914:78449973,78441750:78441772:78447554:78447617:78449889:78449921,	78447555	78447617	78447569	78447569	Frame_Shift_Del	G	-	p.L14fs
LIHC	TCGA-DD-A1EG-01	WDR61	ENST00000558459.1	chr15	78581960:78582054:78582292:78582441:78584957:78585130,78581960:78582054:78582292:78582441:78587287:78587315,	78582293	78582441	78582342	78582342	Frame_Shift_Del	T	-	p.K140fs
LIHC	TCGA-DD-A1EG-01	WDR61	ENST00000560610.1	chr15	78582292:78582441:78584957:78585227:78585508:78585614,	78584958	78585227	78584986	78584986	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-DD-A1EG-01	WDR61	ENST00000560569.1,ENST00000559848.1,ENST00000558311.1,ENST00000267973.2	chr15	78582292:78582441:78584957:78585130:78585508:78585614,	78584958	78585130	78584986	78584986	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-DD-A1EG-01	WDR61	ENST00000560610.1,ENST00000560063.1	chr15	78584957:78585130:78585508:78585614:78587287:78587315,78584973:78585227:78585508:78585614:78587287:78587315,	78585509	78585614	78585537	78585537	Frame_Shift_Del	G	-	p.L40fs
LIHC	TCGA-DD-A1EG-01	HYKK	ENST00000388988.4,ENST00000566332.1,ENST00000360519.3,ENST00000566289.1	chr15	78799958:78800013:78805425:78805767:78807309:78807449,	78805426	78805767	78805521	78805521	Frame_Shift_Del	G	-	p.G31fs
LIHC	TCGA-DD-A1EG-01	HYKK	ENST00000388988.4,ENST00000566332.1,ENST00000360519.3,ENST00000566289.1	chr15	78799958:78800013:78805425:78805767:78807309:78807449,	78805426	78805767	78805589	78805589	Frame_Shift_Del	A	-	p.S53fs
LIHC	TCGA-DD-A1EG-01	ADAMTS7	ENST00000565793.1	chr15	79066965:79067135:79068529:79069930:79080572:79080640,	79068530	79069930	79069099	79069099	Frame_Shift_Del	C	-	p.E518fs
LIHC	TCGA-DD-A1EG-01	ADAMTS7	ENST00000568712.1,ENST00000388820.4	chr15	79068529:79068675:79069090:79069183:79069785:79069930,	79069091	79069183	79069099	79069099	Frame_Shift_Del	C	-	p.E518fs
LIHC	TCGA-DD-A1EG-01	ADAMTS7	ENST00000565793.1	chr15	79066965:79067135:79068529:79069930:79080572:79080640,	79068530	79069930	79069873	79069873	Frame_Shift_Del	G	-	p.P460fs
LIHC	TCGA-DD-A1EG-01	CTSH	ENST00000528741.1	chr15	79228021:79228092:79229659:79229838:79231481:79231508,	79229660	79229838	79229703	79229703	Frame_Shift_Del	C	-	p.W62fs
LIHC	TCGA-DD-A1EG-01	CTSH	ENST00000529861.1,ENST00000530010.1,ENST00000530929.1,ENST00000534038.1,ENST00000220166.5	chr15	79228021:79228092:79229659:79229765:79231481:79231508,	79229660	79229765	79229703	79229703	Frame_Shift_Del	C	-	p.W62fs
LIHC	TCGA-DD-A1EG-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79292084:79292255:79294003:79294129:79296143:79296517,	79294004	79294129	79294012	79294012	Frame_Shift_Del	T	-	p.N872fs
LIHC	TCGA-DD-A1EG-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79292084:79292255:79294003:79294129:79296143:79296517,	79294004	79294129	79294087	79294087	Frame_Shift_Del	T	-	p.N847fs
LIHC	TCGA-DD-A1EG-01	FAH	ENST00000539156.1,ENST00000261755.5,ENST00000407106.1,ENST00000559217.1,ENST00000561421.1	chr15	80472465:80472567:80473383:80473501:80478471:80478682,	80473384	80473501	80473391	80473391	Frame_Shift_Del	A	-	p.E287fs
LIHC	TCGA-DD-A1EG-01	FSD2	ENST00000334574.8	chr15	83437631:83437782:83438501:83438636:83440824:83440980,	83438502	83438636	83438565	83438565	Frame_Shift_Del	A	-	p.W447fs
LIHC	TCGA-DD-A1EG-01	HOMER2	ENST00000561345.1,ENST00000399166.2,ENST00000450735.2	chr15	83527780:83527887:83532918:83533011:83544024:83544156,	83532919	83533011	83532921	83532921	Frame_Shift_Del	G	-	p.Q129fs
LIHC	TCGA-DD-A1EG-01	BTBD1	ENST00000379403.2	chr15	83686712:83686977:83687458:83687605:83689426:83689514,83686712:83686977:83687458:83687605:83698887:83699080,	83687459	83687605	83687586	83687586	Frame_Shift_Del	T	-	p.K388fs
LIHC	TCGA-DD-A1EG-01	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83932367	83932367	Frame_Shift_Del	T	-	p.I546fs
LIHC	TCGA-DD-A1EG-01	ADAMTSL3	ENST00000286744.5	chr15	84700086:84700184:84705524:84705739:84706451:84708594,	84705525	84705739	84705691	84705691	Frame_Shift_Del	A	-	p.K1643fs
LIHC	TCGA-DD-A1EG-01	ADAMTSL3	ENST00000567476.1	chr15	84700086:84700184:84705524:84705756:84706514:84708179,	84705525	84705756	84705691	84705691	Frame_Shift_Del	A	-	p.K1643fs
LIHC	TCGA-DD-A1EG-01	ZSCAN2	ENST00000546148.1	chr15	85144250:85144366:85147050:85147564:85163832:85166947,	85147051	85147564	85147370	85147370	Frame_Shift_Del	G	-	p.R71fs
LIHC	TCGA-DD-A1EG-01	ZNF592	ENST00000299927.3,ENST00000560079.2	chr15	85325887:85328126:85333935:85334114:85341099:85341276,	85333936	85334114	85334012	85334012	Frame_Shift_Del	C	-	p.S766fs
LIHC	TCGA-DD-A1EG-01	ZNF592	ENST00000559607.1	chr15	85325887:85328126:85333935:85334103:85341099:85341276,	85333936	85334103	85334012	85334012	Frame_Shift_Del	C	-	p.S766fs
LIHC	TCGA-DD-A1EG-01	ALPK3	ENST00000258888.5	chr15	85403267:85403303:85405865:85406146:85406782:85406871,	85405866	85406146	85406027	85406027	Frame_Shift_Del	G	-	p.G1633fs
LIHC	TCGA-DD-A1EG-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85658669:85658718:85659214:85659350:85660871:85661063,	85659215	85659350	85659293	85659293	Frame_Shift_Del	A	-	p.E493fs
LIHC	TCGA-DD-A1EG-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85658669:85658718:85659214:85659350:85660871:85661063,	85659215	85659350	85659320	85659320	Frame_Shift_Del	T	-	p.I502fs
LIHC	TCGA-DD-A1EG-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000561024.1,ENST00000557957.1,ENST00000559742.1	chr15	85664027:85664245:85666291:85666424:85669437:85669605,	85666292	85666424	85666374	85666374	Frame_Shift_Del	A	-	p.K679fs
LIHC	TCGA-DD-A1EG-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000561024.1,ENST00000557957.1,ENST00000559742.1	chr15	85669437:85669605:85679764:85679894:85681027:85681263,	85679765	85679894	85679833	85679833	Frame_Shift_Del	C	-	p.I774fs
LIHC	TCGA-DD-A1EG-01	AKAP13	ENST00000394518.2,ENST00000361243.2,ENST00000559362.1	chr15	86064658:86064806:86076814:86077111:86087002:86087186,	86076815	86077111	86077012	86077012	Frame_Shift_Del	G	-	p.G127fs
LIHC	TCGA-DD-A1EG-01	NTRK3	ENST00000557856.1,ENST00000317501.3,ENST00000540489.2,ENST00000542733.2,ENST00000558676.1,ENST00000357724.2,ENST00000355254.2,ENST00000394480.2,ENST00000360948.2	chr15	88576087:88576276:88669501:88669604:88670392:88670422,	88669502	88669604	88669575	88669575	Frame_Shift_Del	A	-	p.F441fs
LIHC	TCGA-DD-A1EG-01	DET1	ENST00000557842.1	chr15	89054789:89054817:89055581:89056371:89060012:89060204,	89055582	89056371	89056244	89056244	Frame_Shift_Del	A	-	p.S542fs
LIHC	TCGA-DD-A1EG-01	DET1	ENST00000268148.8,ENST00000444300.1,ENST00000557842.1,ENST00000564406.1	chr15	89060012:89060204:89070829:89071017:89073853:89074704,	89070830	89071017	89070910	89070910	Frame_Shift_Del	A	-	p.F408fs
LIHC	TCGA-DD-A1EG-01	DET1	ENST00000557842.1	chr15	89070829:89071017:89073853:89074704:89074843:89074946,	89073854	89074704	89073937	89073937	Frame_Shift_Del	T	-	p.M345fs
LIHC	TCGA-DD-A1EG-01	DET1	ENST00000557842.1	chr15	89070829:89071017:89073853:89074704:89074843:89074946,	89073854	89074704	89074386	89074386	Frame_Shift_Del	G	-	p.P195fs
LIHC	TCGA-DD-A1EG-01	MFGE8	ENST00000560937.1,ENST00000566497.1,ENST00000558018.1,ENST00000542878.1,ENST00000539437.1,ENST00000268150.8	chr15	89442691:89442763:89442886:89443042:89444781:89444869,	89442887	89443042	89443021	89443021	Frame_Shift_Del	C	-	p.E290fs
LIHC	TCGA-DD-A1EG-01	MFGE8	ENST00000558029.1,ENST00000566497.1,ENST00000268151.7,ENST00000268150.8	chr15	89450425:89450607:89453022:89453154:89456477:89456490,	89453023	89453154	89453139	89453139	Frame_Shift_Del	T	-	p.N22fs
LIHC	TCGA-DD-A1EG-01	ABHD2	ENST00000562073.1,ENST00000565973.1,ENST00000352732.5,ENST00000355100.3	chr15	89694907:89695083:89698597:89698765:89719042:89719226,	89698598	89698765	89698620	89698620	Frame_Shift_Del	C	-	p.C131fs
LIHC	TCGA-DD-A1EG-01	FANCI	ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89811629:89811756:89816607:89816700:89817398:89817535,	89816608	89816700	89816684	89816684	Frame_Shift_Del	A	-	p.Q320fs
LIHC	TCGA-DD-A1EG-01	FANCI	ENST00000566895.1	chr15	89824400:89824531:89824995:89826481:89828326:89828449,	89824996	89826481	89826429	89826429	Frame_Shift_Del	T	-	p.V549fs
LIHC	TCGA-DD-A1EG-01	FANCI	ENST00000566895.1,ENST00000310775.7	chr15	89836172:89836294:89837063:89837228:89843030:89843197,89836172:89836294:89837063:89837228:89838145:89838325,	89837064	89837228	89837107	89837107	Frame_Shift_Del	A	-	p.K780fs
LIHC	TCGA-DD-A1EG-01	POLG	ENST00000268124.5,ENST00000442287.2,ENST00000530292.1	chr15	89861771:89861980:89862161:89862330:89862458:89862493,	89862162	89862330	89862217	89862217	Frame_Shift_Del	G	-	p.P1073fs
LIHC	TCGA-DD-A1EG-01	SEMA4B	ENST00000559074.1,ENST00000332496.6,ENST00000411539.2,ENST00000560089.1,ENST00000558065.1,ENST00000379122.3	chr15	90764981:90764997:90766790:90766972:90767069:90767154,	90766791	90766972	90766922	90766922	Frame_Shift_Del	C	-	p.S331fs
LIHC	TCGA-DD-A1EG-01	IQGAP1	ENST00000560738.1,ENST00000268182.5,ENST00000560218.1	chr15	91026592:91026825:91027451:91027584:91029261:91029283,	91027452	91027584	91027456	91027456	Frame_Shift_Del	T	-	p.F1266fs
LIHC	TCGA-DD-A1EG-01	IQGAP1	ENST00000560738.1,ENST00000268182.5,ENST00000560218.1	chr15	91026592:91026825:91027451:91027584:91029261:91029283,	91027452	91027584	91027479	91027479	Frame_Shift_Del	C	-	p.V1272fs
LIHC	TCGA-DD-A1EG-01	BLM	ENST00000355112.3,ENST00000560136.1,ENST00000559724.1,ENST00000560509.1	chr15	91312362:91312461:91312667:91312816:91326051:91326158,	91312668	91312816	91312776	91312776	Frame_Shift_Del	A	-	p.K839fs
LIHC	TCGA-DD-A1EG-01	FURIN	ENST00000268171.3	chr15	91423096:91423214:91423323:91423503:91423920:91423986,	91423324	91423503	91423416	91423416	Frame_Shift_Del	G	-	p.R490fs
LIHC	TCGA-DD-A1EG-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91488265:91488293:91489843:91490144:91491025:91491120,	91489844	91490144	91489936	91489936	Frame_Shift_Del	G	-	p.R416fs
LIHC	TCGA-DD-A1EG-01	PRC1	ENST00000394249.3,ENST00000442656.2,ENST00000555455.1,ENST00000361188.5,ENST00000361919.3	chr15	91512805:91512853:91513633:91513744:91517365:91517476,	91513634	91513744	91513706	91513706	Frame_Shift_Del	A	-	p.S501fs
LIHC	TCGA-DD-A1EG-01	PRC1	ENST00000560914.1,ENST00000394249.3,ENST00000442656.2,ENST00000361188.5,ENST00000559828.1,ENST00000361919.3	chr15	91517814:91517961:91519905:91520001:91522387:91522524,	91519906	91520001	91519917	91519917	Frame_Shift_Del	T	-	p.M398fs
LIHC	TCGA-DD-A1EG-01	VPS33B	ENST00000333371.3,ENST00000535906.1,ENST00000574755.1,ENST00000554264.1,ENST00000556096.2,ENST00000535843.1	chr15	91553030:91553076:91557033:91557101:91557613:91557663,	91557034	91557101	91557082	91557082	Frame_Shift_Del	T	-	p.K103fs
LIHC	TCGA-DD-A1EG-01	CHD2	ENST00000309818.5	chr15	93470473:93470560:93472259:93472321:93480747:93480855,93470473:93470560:93472259:93472321:93482807:93482948,	93472260	93472321	93472289	93472289	Frame_Shift_Del	A	-	p.P137fs
LIHC	TCGA-DD-A1EG-01	CHD2	ENST00000557381.1,ENST00000394196.4	chr15	93541378:93541491:93541728:93541851:93543741:93543870,93540531:93540633:93541728:93541851:93543741:93543870,	93541729	93541851	93541761	93541761	Frame_Shift_Del	G	-	p.Q1306fs
LIHC	TCGA-DD-A1EG-01	CHD2	ENST00000557381.1,ENST00000394196.4	chr15	93541378:93541491:93541728:93541851:93543741:93543870,93540531:93540633:93541728:93541851:93543741:93543870,	93541729	93541851	93541827	93541827	Frame_Shift_Del	G	-	p.K1328fs
LIHC	TCGA-DD-A1EG-01	MCTP2	ENST00000456504.1,ENST00000357742.4	chr15	94945128:94945248:94983404:94983527:94986147:94986189,	94983405	94983527	94983428	94983428	Frame_Shift_Del	T	-	p.N703fs
LIHC	TCGA-DD-A1EG-01	MCTP2	ENST00000456504.1,ENST00000451018.3,ENST00000357742.4	chr15	95001365:95001475:95013561:95013671:95019924:95020022,	95013562	95013671	95013588	95013588	Frame_Shift_Del	T	-	p.L796fs
LIHC	TCGA-DD-A1EG-01	SNRPA1	ENST00000394082.4,ENST00000540017.2,ENST00000559309.1	chr15	101825171:101825265:101825930:101826006:101827112:101827215,	101825931	101826006	101825948	101825948	Frame_Shift_Del	C	-	p.D200fs
LIHC	TCGA-DD-A1EG-01	PCSK6	ENST00000348070.1,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000398185.2,ENST00000560921.1,ENST00000559678.1	chr15	101872056:101872236:101906400:101906537:101910539:101910673,	101906401	101906537	101906443	101906443	Frame_Shift_Del	T	-	p.I605fs
LIHC	TCGA-DD-A1EG-01	PCSK6	ENST00000561444.1,ENST00000348070.1,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000558716.1,ENST00000398185.2,ENST00000560921.1,ENST00000344273.2,ENST00000560271.1,ENST00000398181.2,ENST00000559678.1	chr15	101970191:101970268:101971524:101971668:101972194:101972290,	101971525	101971668	101971589	101971589	Frame_Shift_Del	T	-	p.N197fs
LIHC	TCGA-DD-A1EG-01	TARSL2	ENST00000335968.3,ENST00000558533.1,ENST00000539112.1	chr15	102201914:102202019:102211688:102211789:102211873:102211951,	102211689	102211789	102211777	102211777	Frame_Shift_Del	T	-	p.I627fs
LIHC	TCGA-DD-A1EG-01	NPRL3	ENST00000483663.1,ENST00000468260.1,ENST00000405960.3,ENST00000457916.1,ENST00000445810.1,ENST00000399953.3,ENST00000428323.2,ENST00000399957.3,ENST00000473674.1,ENST00000399951.3	chr16	148227:148299:150369:150507:160522:160604,	150370	150507	150403	150403	Frame_Shift_Del	G	-	p.P245fs
LIHC	TCGA-DD-A1EG-01	NPRL3	ENST00000483663.1,ENST00000468260.1,ENST00000405960.3,ENST00000457916.1,ENST00000445810.1,ENST00000399953.3,ENST00000428323.2,ENST00000399957.3,ENST00000473674.1,ENST00000399951.3	chr16	150369:150507:160522:160604:162620:162774,	160523	160604	160583	160583	Frame_Shift_Del	G	-	p.P190fs
LIHC	TCGA-DD-A1EG-01	TMEM8A	ENST00000476735.1	chr16	427426:427585:427670:427848:434255:434396,	427671	427848	427749	427749	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A1EG-01	TMEM8A	ENST00000476735.1	chr16	427426:427585:427670:427848:434255:434396,	427671	427848	427759	427759	Frame_Shift_Del	G	-	p.R71fs
LIHC	TCGA-DD-A1EG-01	CAPN15	ENST00000219611.2	chr16	586028:586142:596816:598287:598992:599201,	596817	598287	597908	597908	Frame_Shift_Del	C	-	p.A357fs
LIHC	TCGA-DD-A1EG-01	PIGQ	ENST00000540241.1,ENST00000321878.5,ENST00000480424.2,ENST00000409527.2	chr16	631198:631341:632247:632309:632483:632647,631198:631341:632247:632309:632882:632947,630884:630972:632247:632309:632882:632947,	632248	632309	632289	632289	Frame_Shift_Del	C	-	p.P525fs
LIHC	TCGA-DD-A1EG-01	WDR90	ENST00000552943.1	chr16	703524:703670:703745:705147:705306:705468,	703746	705147	705131	705131	Frame_Shift_Del	T	-	p.F515fs
LIHC	TCGA-DD-A1EG-01	WDR90	ENST00000549091.1,ENST00000420061.2,ENST00000293879.4,ENST00000549648.1	chr16	703785:703803:705028:705147:705306:705468,	705029	705147	705131	705131	Frame_Shift_Del	T	-	p.F515fs
LIHC	TCGA-DD-A1EG-01	WDR90	ENST00000549091.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000546516.1,ENST00000552943.1	chr16	707090:707221:707761:707892:708182:708344,	707762	707892	707826	707826	Frame_Shift_Del	C	-	p.R846fs
LIHC	TCGA-DD-A1EG-01	CCDC78	ENST00000293889.6,ENST00000485091.1,ENST00000345165.4	chr16	774321:774509:774680:774806:774910:774989,	774681	774806	774760	774760	Frame_Shift_Del	T	-	p.N229fs
LIHC	TCGA-DD-A1EG-01	MSLN	ENST00000563651.1,ENST00000563941.1,ENST00000566549.1,ENST00000569566.1,ENST00000545450.2,ENST00000382862.3	chr16	814022:814143:814646:814726:814906:815036,	814647	814726	814677	814677	Frame_Shift_Del	C	-	p.P112fs
LIHC	TCGA-DD-A1EG-01	RPUSD1	ENST00000007264.2,ENST00000567283.1,ENST00000567114.1,ENST00000565377.1,ENST00000561734.1	chr16	836148:836377:836826:836928:837076:837179,	836827	836928	836913	836913	Frame_Shift_Del	T	-	p.K142fs
LIHC	TCGA-DD-A1EG-01	CHTF18	ENST00000262315.9,ENST00000440239.1,ENST00000317063.6,ENST00000455171.2	chr16	841160:841370:841850:841948:842223:842347,	841851	841948	841869	841869	Frame_Shift_Del	C	-	p.P571fs
LIHC	TCGA-DD-A1EG-01	CHTF18	ENST00000565787.1	chr16	841160:841370:842223:842347:842438:842590,	842224	842347	842230	842230	Frame_Shift_Del	C	-	p.D598fs
LIHC	TCGA-DD-A1EG-01	CHTF18	ENST00000565787.1	chr16	841160:841370:842223:842347:842438:842590,	842224	842347	842340	842340	Frame_Shift_Del	C	-	p.A635fs
LIHC	TCGA-DD-A1EG-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000564954.1,ENST00000348261.5	chr16	1245028:1245083:1245431:1245565:1245925:1246023,	1245432	1245565	1245456	1245456	Frame_Shift_Del	T	-	p.F147fs
LIHC	TCGA-DD-A1EG-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000569107.1,ENST00000564927.1,ENST00000564231.1,ENST00000348261.5,ENST00000562079.1	chr16	1265522:1265593:1266931:1267010:1267918:1268040,	1266932	1267010	1266965	1266965	Frame_Shift_Del	T	-	p.F1761fs
LIHC	TCGA-DD-A1EG-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000569107.1,ENST00000564927.1,ENST00000348261.5	chr16	1268209:1268651:1268969:1269130:1269980:1271084,	1268970	1269130	1269084	1269084	Frame_Shift_Del	G	-	p.R2001fs
LIHC	TCGA-DD-A1EG-01	CACNA1H	ENST00000564231.1,ENST00000562079.1	chr16	1268209:1268651:1269002:1269130:1269980:1271084,	1269003	1269130	1269084	1269084	Frame_Shift_Del	G	-	p.R2001fs
LIHC	TCGA-DD-A1EG-01	UBE2I	ENST00000568288.1	chr16	1364045:1364097:1364293:1364377:1365654:1365727,1359758:1359774:1364293:1364377:1365654:1365727,	1364294	1364377	1364314	1364314	Frame_Shift_Del	A	-	p.T29fs
LIHC	TCGA-DD-A1EG-01	TELO2	ENST00000262319.6	chr16	1550563:1550700:1551420:1551500:1551663:1551774,	1551421	1551500	1551434	1551434	Frame_Shift_Del	A	-	p.E432fs
LIHC	TCGA-DD-A1EG-01	IFT140	ENST00000426508.2	chr16	1575887:1576078:1576619:1576797:1607935:1608135,	1576620	1576797	1576722	1576722	Frame_Shift_Del	C	-	p.G825fs
LIHC	TCGA-DD-A1EG-01	IFT140	ENST00000397417.2,ENST00000565298.1,ENST00000439987.2,ENST00000426508.2	chr16	1616161:1616292:1618217:1618335:1621407:1621535,	1618218	1618335	1618276	1618276	Frame_Shift_Del	C	-	p.G571fs
LIHC	TCGA-DD-A1EG-01	MLST8	ENST00000564088.1,ENST00000562352.1,ENST00000562479.1,ENST00000570224.1,ENST00000563067.1,ENST00000397124.1,ENST00000569848.1,ENST00000564319.1,ENST00000301724.10,ENST00000569457.1,ENST00000566835.1,ENST00000565250.1,ENST00000301725.7,ENST00000567282.1,ENST00000568194.1,ENST00000569417.1,ENST00000565330.1,ENST00000561651.1,ENST00000568542.1,ENST00000382450.4,ENST00000562851.1	chr16	2256555:2256660:2257035:2257111:2257197:2257298,2256555:2256660:2257035:2257111:2257193:2257251,	2257036	2257111	2257102	2257102	Frame_Shift_Del	C	-	p.H137fs
LIHC	TCGA-DD-A1EG-01	RNPS1	ENST00000569598.2,ENST00000565870.1,ENST00000561518.1,ENST00000561718.1,ENST00000301730.8,ENST00000566458.1,ENST00000320225.5,ENST00000566397.1,ENST00000565678.1,ENST00000568631.1,ENST00000397086.2	chr16	2304029:2304064:2305585:2305727:2312278:2312432,	2305586	2305727	2305699	2305699	Frame_Shift_Del	G	-	p.A235fs
LIHC	TCGA-DD-A1EG-01	ABCA3	ENST00000382381.3,ENST00000301732.5,ENST00000563623.1	chr16	2339434:2339621:2342140:2342239:2345590:2345741,	2342141	2342239	2342145	2342145	Frame_Shift_Del	G	-	p.L837fs
LIHC	TCGA-DD-A1EG-01	ABCA3	ENST00000382381.3,ENST00000301732.5,ENST00000563623.1	chr16	2339434:2339621:2342140:2342239:2345590:2345741,	2342141	2342239	2342170	2342170	Frame_Shift_Del	G	-	p.S828fs
LIHC	TCGA-DD-A1EG-01	PRSS27	ENST00000302641.3	chr16	2764312:2764337:2765718:2765881:2766500:2766527,	2765719	2765881	2765868	2765868	Frame_Shift_Del	G	-	p.P29fs
LIHC	TCGA-DD-A1EG-01	PRSS21	ENST00000005995.3,ENST00000450020.3,ENST00000575199.1	chr16	2867879:2867967:2868677:2868970:2870955:2871065,	2868678	2868970	2868871	2868871	Frame_Shift_Del	A	-	p.K149fs
LIHC	TCGA-DD-A1EG-01	PRSS21	ENST00000574265.1,ENST00000455114.1,ENST00000577043.1	chr16	2867879:2867967:2868683:2868970:2870955:2871065,	2868684	2868970	2868871	2868871	Frame_Shift_Del	A	-	p.K149fs
LIHC	TCGA-DD-A1EG-01	PRSS21	ENST00000570629.1	chr16	2867801:2867967:2868759:2868970:2870955:2871065,	2868760	2868970	2868871	2868871	Frame_Shift_Del	A	-	p.K149fs
LIHC	TCGA-DD-A1EG-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983149:2983583:2983716:2983980:2987121:2987271,	2983717	2983980	2983745	2983745	Frame_Shift_Del	G	-	p.L426fs
LIHC	TCGA-DD-A1EG-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983149:2983583:2983716:2983980:2987121:2987271,	2983717	2983980	2983825	2983825	Frame_Shift_Del	G	-	p.R453fs
LIHC	TCGA-DD-A1EG-01	CLDN6	ENST00000572154.1	chr16	3064857:3065182:3065929:3066043:3068149:3068171,	3065930	3066043	3065973	3065973	Frame_Shift_Del	C	-	p.G17fs
LIHC	TCGA-DD-A1EG-01	ZSCAN10	ENST00000576985.1	chr16	3141764:3141829:3142542:3143005:3149190:3149229,3142229:3142317:3142542:3143005:3149190:3149229,	3142543	3143005	3142768	3142768	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A1EG-01	ZSCAN10	ENST00000572548.1	chr16	3141764:3141829:3142677:3143005:3149190:3149229,	3142678	3143005	3142768	3142768	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A1EG-01	ZNF205	ENST00000570935.1,ENST00000219091.4,ENST00000414351.1,ENST00000382192.3	chr16	3165521:3165569:3165829:3165921:3166427:3166548,	3165830	3165921	3165834	3165834	Frame_Shift_Del	C	-	p.L92fs
LIHC	TCGA-DD-A1EG-01	ZNF263	ENST00000219069.5	chr16	3333954:3334205:3335680:3335754:3336022:3336060,3335058:3335239:3335680:3335754:3336022:3336060,	3335681	3335754	3335749	3335749	Frame_Shift_Del	C	-	p.P213fs
LIHC	TCGA-DD-A1EG-01	ZSCAN32	ENST00000576500.1	chr16	3433670:3433711:3434458:3434941:3440009:3440133,3433670:3433711:3434458:3434941:3447191:3447194,	3434459	3434941	3434796	3434796	Frame_Shift_Del	A	-	p.F299fs
LIHC	TCGA-DD-A1EG-01	CLUAP1	ENST00000576634.1,ENST00000341633.5,ENST00000576117.1,ENST00000417763.2,ENST00000571025.1	chr16	3551017:3551089:3556330:3556415:3558288:3558464,3554719:3554831:3556330:3556415:3558288:3558464,	3556331	3556415	3556384	3556384	Frame_Shift_Del	T	-	p.V63fs
LIHC	TCGA-DD-A1EG-01	CREBBP	ENST00000572134.1,ENST00000262367.5,ENST00000382070.3	chr16	3828011:3828183:3828700:3828818:3830732:3830868,	3828701	3828818	3828788	3828788	Frame_Shift_Del	G	-	p.P618fs
LIHC	TCGA-DD-A1EG-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3843386:3843627:3860603:3860780:3900297:3901010,	3860604	3860780	3860693	3860693	Frame_Shift_Del	G	-	p.Q296fs
LIHC	TCGA-DD-A1EG-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3843386:3843627:3860603:3860780:3900297:3901010,	3860604	3860780	3860713	3860713	Frame_Shift_Del	C	-	p.G289fs
LIHC	TCGA-DD-A1EG-01	CREBBP	ENST00000382070.3	chr16	3860603:3860780:3900297:3901010:3929832:3930121,	3900298	3901010	3900626	3900626	Frame_Shift_Del	T	-	p.K157fs
LIHC	TCGA-DD-A1EG-01	ADCY9	ENST00000294016.3	chr16	4012651:4016967:4024669:4024711:4027482:4027631,	4024670	4024711	4024692	4024692	Frame_Shift_Del	G	-	p.L950fs
LIHC	TCGA-DD-A1EG-01	ADCY9	ENST00000575550.1	chr16	4039089:4039097:4043406:4043511:4057368:4057559,	4043407	4043511	4043417	4043417	Frame_Shift_Del	T	-	p.N660fs
LIHC	TCGA-DD-A1EG-01	DNAJA3	ENST00000431375.2,ENST00000576911.1,ENST00000262375.6,ENST00000355296.4	chr16	4496886:4497015:4498733:4498849:4500400:4500498,	4498734	4498849	4498779	4498779	Frame_Shift_Del	A	-	p.K391fs
LIHC	TCGA-DD-A1EG-01	NMRAL1	ENST00000574425.1,ENST00000404295.3,ENST00000283429.6,ENST00000574733.1	chr16	4516211:4516403:4519227:4519466:4524093:4524167,	4519228	4519466	4519394	4519394	Frame_Shift_Del	T	-	p.N38fs
LIHC	TCGA-DD-A1EG-01	CDIP1	ENST00000562579.1,ENST00000399599.3,ENST00000586728.1,ENST00000562334.1,ENST00000563332.2,ENST00000563507.1,ENST00000567695.1,ENST00000589159.1	chr16	4563816:4563852:4564046:4564145:4564575:4564631,	4564047	4564145	4564112	4564112	Frame_Shift_Del	G	-	p.P8fs
LIHC	TCGA-DD-A1EG-01	SEPT12	ENST00000268231.8,ENST00000587603.1	chr16	4833649:4833767:4833931:4834069:4835807:4835837,	4833932	4834069	4833952	4833952	Frame_Shift_Del	A	-	p.F164fs
LIHC	TCGA-DD-A1EG-01	UBN1	ENST00000262376.6,ENST00000590769.1,ENST00000396658.4,ENST00000545171.1	chr16	4911059:4911103:4918833:4918904:4920212:4920342,	4918834	4918904	4918851	4918851	Frame_Shift_Del	G	-	p.E376fs
LIHC	TCGA-DD-A1EG-01	UBN1	ENST00000262376.6,ENST00000396658.4	chr16	4925272:4925435:4926871:4927112:4930083:4930295,4925272:4925435:4926871:4927112:4927385:4927475,	4926872	4927112	4926916	4926916	Frame_Shift_Del	G	-	p.M1023fs
LIHC	TCGA-DD-A1EG-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4940184:4940335:4940728:4940922:4941811:4941950,	4940729	4940922	4940734	4940734	Frame_Shift_Del	T	-	p.E719fs
LIHC	TCGA-DD-A1EG-01	C16orf89	ENST00000315997.5,ENST00000422873.1,ENST00000350219.4,ENST00000472572.3,ENST00000592343.1	chr16	5105246:5105351:5106053:5106189:5108493:5108611,	5106054	5106189	5106173	5106173	Frame_Shift_Del	C	-	p.G215fs
LIHC	TCGA-DD-A1EG-01	RBFOX1	ENST00000547372.1,ENST00000551752.1,ENST00000422070.4,ENST00000550418.1,ENST00000355637.4,ENST00000436368.2,ENST00000570626.1,ENST00000547338.1,ENST00000311745.5,ENST00000553186.1,ENST00000340209.4	chr16	7568148:7568391:7629778:7629922:7637248:7637302,	7629779	7629922	7629840	7629840	Frame_Shift_Del	A	-	p.E116fs
LIHC	TCGA-DD-A1EG-01	RBFOX1	ENST00000547605.1	chr16	7568148:7568391:7629781:7629922:7637248:7637302,	7629782	7629922	7629840	7629840	Frame_Shift_Del	A	-	p.E116fs
LIHC	TCGA-DD-A1EG-01	RBFOX1	ENST00000547372.1,ENST00000547605.1,ENST00000535565.2,ENST00000551752.1,ENST00000422070.4,ENST00000550418.1,ENST00000355637.4,ENST00000436368.2,ENST00000547338.1,ENST00000552089.1,ENST00000311745.5,ENST00000340209.4	chr16	7657286:7657340:7680604:7680685:7703816:7703848,	7680605	7680685	7680656	7680656	Frame_Shift_Del	C	-	p.A248fs
LIHC	TCGA-DD-A1EG-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551340	10551340	Frame_Shift_Del	A	-	p.K437fs
LIHC	TCGA-DD-A1EG-01	ATF7IP2	ENST00000535850.1,ENST00000568027.1,ENST00000543967.1,ENST00000356427.2,ENST00000565450.1,ENST00000396560.2	chr16	10567335:10567391:10567779:10567846:10574735:10574820,	10567780	10567846	10567818	10567818	Frame_Shift_Del	A	-	p.T507fs
LIHC	TCGA-DD-A1EG-01	NUBP1	ENST00000433392.2	chr16	10846466:10846535:10850546:10850637:10851729:10851851,	10850547	10850637	10850631	10850631	Frame_Shift_Del	A	-	p.K149fs
LIHC	TCGA-DD-A1EG-01	CLEC16A	ENST00000409790.1,ENST00000261657.5	chr16	11217756:11217803:11219835:11220003:11260244:11260409,	11219836	11220003	11219876	11219876	Frame_Shift_Del	G	-	p.L838fs
LIHC	TCGA-DD-A1EG-01	TXNDC11	ENST00000570917.1,ENST00000283033.5,ENST00000356957.3	chr16	11772938:11773693:11778020:11778101:11781712:11781822,	11778021	11778101	11778032	11778032	Frame_Shift_Del	A	-	p.F768fs
LIHC	TCGA-DD-A1EG-01	TXNDC11	ENST00000575591.1,ENST00000283033.5,ENST00000576969.1	chr16	11791989:11792181:11794307:11794420:11815169:11815291,11791989:11792181:11794307:11794420:11815432:11815526,	11794308	11794420	11794384	11794384	Frame_Shift_Del	T	-	p.N304fs
LIHC	TCGA-DD-A1EG-01	ZC3H7A	ENST00000571405.1,ENST00000571198.1,ENST00000355758.4,ENST00000396516.2	chr16	11856526:11856603:11857333:11857515:11858908:11859009,	11857334	11857515	11857349	11857349	Frame_Shift_Del	T	-	p.M663fs
LIHC	TCGA-DD-A1EG-01	GSPT1	ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11969942:11970032:11971263:11971437:11976871:11976952,	11971264	11971437	11971379	11971379	Frame_Shift_Del	G	-	p.P496fs
LIHC	TCGA-DD-A1EG-01	GSPT1	ENST00000565267.1,ENST00000439887.2	chr16	11988810:11988844:11990414:11990639:11991696:11991738,	11990415	11990639	11990564	11990564	Frame_Shift_Del	C	-	p.G173fs
LIHC	TCGA-DD-A1EG-01	GSPT1	ENST00000568849.1,ENST00000434724.2,ENST00000563468.1,ENST00000420576.2	chr16	11988810:11988844:11990414:11990642:11991696:11991738,	11990415	11990642	11990564	11990564	Frame_Shift_Del	C	-	p.G173fs
LIHC	TCGA-DD-A1EG-01	SNX29	ENST00000562510.1,ENST00000306030.3,ENST00000564791.1,ENST00000566228.1,ENST00000323433.4	chr16	12450109:12450136:12492302:12492358:12497304:12497386,	12492303	12492358	12492322	12492322	Frame_Shift_Del	A	-	p.Q640fs
LIHC	TCGA-DD-A1EG-01	ERCC4	ENST00000575156.1,ENST00000574194.1,ENST00000311895.7	chr16	14021978:14022092:14024566:14024747:14026013:14026096,	14024567	14024747	14024618	14024618	Frame_Shift_Del	A	-	p.K282fs
LIHC	TCGA-DD-A1EG-01	PARN	ENST00000437198.2,ENST00000341484.7,ENST00000539279.1,ENST00000569444.1,ENST00000420015.2,ENST00000564113.1	chr16	14678203:14678279:14678605:14678648:14680174:14680218,	14678606	14678648	14678609	14678609	Frame_Shift_Del	A	-	p.F334fs
LIHC	TCGA-DD-A1EG-01	BFAR	ENST00000566710.1,ENST00000261658.2,ENST00000426842.2	chr16	14738144:14738466:14748922:14749067:14755748:14755922,14743660:14743830:14748922:14749067:14755748:14755922,	14748923	14749067	14748928	14748928	Frame_Shift_Del	T	-	p.L216fs
LIHC	TCGA-DD-A1EG-01	NTAN1	ENST00000567420.1	chr16	15141711:15141777:15141853:15141956:15149597:15149644,	15141854	15141956	15141908	15141908	Frame_Shift_Del	G	-	p.Q44fs
LIHC	TCGA-DD-A1EG-01	RRN3	ENST00000540462.1,ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1	chr16	15163926:15164111:15164977:15165108:15166806:15166937,	15164978	15165108	15165070	15165070	Frame_Shift_Del	T	-	p.K389fs
LIHC	TCGA-DD-A1EG-01	RRN3	ENST00000540462.1,ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1	chr16	15164977:15165108:15166806:15166937:15168579:15168718,	15166807	15166937	15166889	15166889	Frame_Shift_Del	T	-	p.N349fs
LIHC	TCGA-DD-A1EG-01	RRN3	ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1,ENST00000561685.1	chr16	15168579:15168718:15170414:15170507:15173854:15173953,	15170415	15170507	15170468	15170468	Frame_Shift_Del	T	-	p.T269fs
LIHC	TCGA-DD-A1EG-01	RRN3	ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1,ENST00000564131.1	chr16	15173854:15173953:15177369:15177439:15178498:15178562,	15177370	15177439	15177394	15177394	Frame_Shift_Del	A	-	p.F214fs
LIHC	TCGA-DD-A1EG-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16043433:16043656:16101672:16101849:16103632:16103758,	16101673	16101849	16101702	16101702	Frame_Shift_Del	C	-	p.N26fs
LIHC	TCGA-DD-A1EG-01	ABCC1	ENST00000399408.2,ENST00000575422.1,ENST00000399410.3,ENST00000572882.1,ENST00000345148.5	chr16	16173208:16173335:16177222:16177399:16184261:16184445,16173208:16173335:16177222:16177399:16180680:16180815,	16177223	16177399	16177287	16177287	Frame_Shift_Del	T	-	p.L727fs
LIHC	TCGA-DD-A1EG-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16208622:16208933:16215831:16216031:16218645:16218772,	16215832	16216031	16215921	16215921	Frame_Shift_Del	G	-	p.L1170fs
LIHC	TCGA-DD-A1EG-01	ABCC6	ENST00000205557.7	chr16	16269767:16269843:16271308:16271483:16272654:16272822,	16271309	16271483	16271411	16271411	Frame_Shift_Del	C	-	p.A830fs
LIHC	TCGA-DD-A1EG-01	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2	chr16	16280980:16281068:16282687:16282831:16284020:16284224,	16282688	16282831	16282726	16282726	Frame_Shift_Del	G	-	p.Q581fs
LIHC	TCGA-DD-A1EG-01	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2,ENST00000577103.1	chr16	16297266:16297470:16302584:16302716:16306041:16306103,	16302585	16302716	16302677	16302677	Frame_Shift_Del	T	-	p.K234fs
LIHC	TCGA-DD-A1EG-01	NOMO3	ENST00000399336.4,ENST00000575225.1,ENST00000538468.1,ENST00000263012.6	chr16	16344784:16344937:16345819:16345957:16346289:16346379,	16345820	16345957	16345943	16345943	Frame_Shift_Del	G	-	p.G288fs
LIHC	TCGA-DD-A1EG-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18840607:18841077:18841247:18841437:18841540:18841691,	18841248	18841437	18841357	18841357	Frame_Shift_Del	A	-	p.F3008fs
LIHC	TCGA-DD-A1EG-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18849872:18850011:18851019:18851268:18852886:18853116,	18851020	18851268	18851223	18851223	Frame_Shift_Del	G	-	p.R2248fs
LIHC	TCGA-DD-A1EG-01	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000568469.1,ENST00000421369.3	chr16	19034434:19034517:19041545:19041691:19046997:19047132,	19041546	19041691	19041603	19041603	Frame_Shift_Del	T	-	p.F147fs
LIHC	TCGA-DD-A1EG-01	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19056662:19056760:19058384:19058571:19063007:19063138,	19058385	19058571	19058429	19058429	Frame_Shift_Del	G	-	p.W423fs
LIHC	TCGA-DD-A1EG-01	SYT17	ENST00000562034.1,ENST00000562711.2,ENST00000355377.2,ENST00000568115.1	chr16	19191712:19191861:19194849:19195469:19234366:19234487,	19194850	19195469	19194993	19194993	Frame_Shift_Del	C	-	p.P98fs
LIHC	TCGA-DD-A1EG-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19475097:19475346:19477403:19477555:19481002:19481147,	19477404	19477555	19477544	19477544	Frame_Shift_Del	T	-	p.S542fs
LIHC	TCGA-DD-A1EG-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19492691:19492787:19498266:19498342:19498514:19498648,	19498267	19498342	19498335	19498335	Frame_Shift_Del	C	-	p.S811fs
LIHC	TCGA-DD-A1EG-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548778	19548778	Frame_Shift_Del	A	-	p.Q596fs
LIHC	TCGA-DD-A1EG-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548844	19548844	Frame_Shift_Del	A	-	p.E618fs
LIHC	TCGA-DD-A1EG-01	KNOP1	ENST00000219837.7,ENST00000565844.1	chr16	19721830:19721908:19722693:19722762:19725439:19725899,	19722694	19722762	19722724	19722724	Frame_Shift_Del	T	-	p.K319fs
LIHC	TCGA-DD-A1EG-01	IQCK	ENST00000320394.6,ENST00000561839.1,ENST00000568300.2,ENST00000308214.9,ENST00000564955.1,ENST00000433597.2,ENST00000562762.1	chr16	19775356:19775434:19838347:19838459:19867808:19867883,19800159:19800244:19838347:19838459:19867808:19867883,	19838348	19838459	19838429	19838429	Frame_Shift_Del	A	-	p.K258fs
LIHC	TCGA-DD-A1EG-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331703	20331703	Frame_Shift_Del	C	-	p.E248fs
LIHC	TCGA-DD-A1EG-01	GP2	ENST00000381362.4	chr16	20334190:20334301:20335137:20335578:20337659:20337789,20334702:20334711:20335137:20335578:20337659:20337789,	20335138	20335578	20335493	20335493	Frame_Shift_Del	A	-	p.F60fs
LIHC	TCGA-DD-A1EG-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20355350:20355494:20357447:20357656:20359544:20359652,	20357448	20357656	20357621	20357621	Frame_Shift_Del	C	-	p.A370fs
LIHC	TCGA-DD-A1EG-01	ACSM2B	ENST00000565232.1,ENST00000569327.1,ENST00000329697.6,ENST00000569364.1,ENST00000414188.2,ENST00000567001.1	chr16	20566764:20566798:20570558:20570769:20575990:20576175,	20570559	20570769	20570713	20570713	Frame_Shift_Del	T	-	p.E78fs
LIHC	TCGA-DD-A1EG-01	ACSM1	ENST00000219151.4,ENST00000519031.1,ENST00000307493.4,ENST00000524149.1,ENST00000520010.1	chr16	20648692:20648773:20651782:20651906:20673115:20673195,	20651783	20651906	20651818	20651818	Frame_Shift_Del	G	-	p.L363fs
LIHC	TCGA-DD-A1EG-01	ACSM3	ENST00000568235.1	chr16	20775361:20775447:20781305:20781575:20787160:20787242,20766894:20766938:20781305:20781575:20787160:20787242,	20781306	20781575	20781418	20781418	Frame_Shift_Del	T	-	p.I21fs
LIHC	TCGA-DD-A1EG-01	ACSM3	ENST00000568235.1	chr16	20775361:20775447:20781305:20781575:20787160:20787242,20766894:20766938:20781305:20781575:20787160:20787242,	20781306	20781575	20781512	20781512	Frame_Shift_Del	G	-	p.L52fs
LIHC	TCGA-DD-A1EG-01	ERI2	ENST00000563117.1,ENST00000569729.1,ENST00000357967.4,ENST00000300005.3,ENST00000564349.1	chr16	20811278:20811360:20811623:20811724:20812524:20812681,	20811624	20811724	20811669	20811669	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-DD-A1EG-01	DNAH3	ENST00000261383.3,ENST00000415178.1,ENST00000572640.1	chr16	21011545:21011840:21014425:21014529:21030945:21031191,	21014426	21014529	21014444	21014444	Frame_Shift_Del	T	-	p.K2036fs
LIHC	TCGA-DD-A1EG-01	CDR2	ENST00000564542.1	chr16	22361021:22361170:22376222:22376335:22433481:22433535,	22376223	22376335	22376279	22376279	Frame_Shift_Del	C	-	p.E46fs
LIHC	TCGA-DD-A1EG-01	SCNN1B	ENST00000343070.2	chr16	23313590:23313758:23359912:23360231:23364121:23364234,	23359913	23360231	23360120	23360120	Frame_Shift_Del	G	-	p.W67fs
LIHC	TCGA-DD-A1EG-01	SCNN1B	ENST00000307331.5,ENST00000343070.2,ENST00000568923.1,ENST00000564275.1	chr16	23382643:23382783:23383096:23383204:23387058:23387176,	23383097	23383204	23383129	23383129	Frame_Shift_Del	C	-	p.S359fs
LIHC	TCGA-DD-A1EG-01	COG7	ENST00000307149.5	chr16	23404553:23404668:23409366:23409450:23415014:23415155,	23409367	23409450	23409434	23409434	Frame_Shift_Del	C	-	p.G607fs
LIHC	TCGA-DD-A1EG-01	GGA2	ENST00000309859.4	chr16	23481316:23481486:23486224:23486382:23489688:23489822,	23486225	23486382	23486284	23486284	Frame_Shift_Del	G	-	p.P464fs
LIHC	TCGA-DD-A1EG-01	GGA2	ENST00000570111.1,ENST00000569189.2,ENST00000563494.1	chr16	23505623:23505699:23507009:23507099:23521641:23521710,	23507010	23507099	23507045	23507045	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-DD-A1EG-01	GGA2	ENST00000562117.1,ENST00000562944.1,ENST00000568799.1,ENST00000567468.1	chr16	23505623:23505699:23507014:23507099:23521641:23521710,	23507015	23507099	23507045	23507045	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-DD-A1EG-01	PALB2	ENST00000261584.4,ENST00000568219.1	chr16	23619184:23619333:23625324:23625412:23632682:23632710,	23625325	23625412	23625402	23625402	Frame_Shift_Del	T	-	p.T1042fs
LIHC	TCGA-DD-A1EG-01	PLK1	ENST00000562272.1,ENST00000300093.4	chr16	23693384:23693478:23695190:23695410:23698789:23698945,	23695191	23695410	23695316	23695316	Frame_Shift_Del	C	-	p.L314fs
LIHC	TCGA-DD-A1EG-01	ERN2	ENST00000457008.2	chr16	23707214:23707299:23711859:23712025:23713472:23713594,	23711860	23712025	23711929	23711929	Frame_Shift_Del	C	-	p.A534fs
LIHC	TCGA-DD-A1EG-01	ERN2	ENST00000562562.1	chr16	23707214:23707299:23711859:23712435:23713472:23713594,	23711860	23712435	23711929	23711929	Frame_Shift_Del	C	-	p.A534fs
LIHC	TCGA-DD-A1EG-01	RBBP6	ENST00000564314.1,ENST00000319715.4	chr16	24578463:24578826:24579112:24579214:24580065:24581434,	24579113	24579214	24579207	24579207	Frame_Shift_Del	T	-	p.F683fs
LIHC	TCGA-DD-A1EG-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24741573:24741621:24762046:24762134:24769659:24769681,	24762047	24762134	24762087	24762087	Frame_Shift_Del	A	-	p.K35fs
LIHC	TCGA-DD-A1EG-01	TNRC6A	ENST00000491718.1,ENST00000315183.7,ENST00000567232.1,ENST00000395799.3,ENST00000450465.2	chr16	24805864:24806040:24807227:24807260:24808810:24808824,	24807228	24807260	24807240	24807240	Frame_Shift_Del	A	-	p.K1182fs
LIHC	TCGA-DD-A1EG-01	TNRC6A	ENST00000491718.1,ENST00000395799.3	chr16	24815497:24815640:24816025:24816172:24816334:24816472,	24816026	24816172	24816089	24816089	Frame_Shift_Del	C	-	p.P1302fs
LIHC	TCGA-DD-A1EG-01	SLC5A11	ENST00000569520.1,ENST00000568579.1,ENST00000424767.2,ENST00000567758.1,ENST00000545376.1	chr16	24857607:24857759:24869940:24870099:24873921:24873993,	24869941	24870099	24870022	24870022	Frame_Shift_Del	C	-	p.P20fs
LIHC	TCGA-DD-A1EG-01	LCMT1	ENST00000577157.1,ENST00000570981.1,ENST00000380962.5,ENST00000399069.3,ENST00000380966.4	chr16	25139795:25139887:25143722:25143844:25151491:25151568,	25143723	25143844	25143727	25143727	Frame_Shift_Del	T	-	p.Y70fs
LIHC	TCGA-DD-A1EG-01	IL4R	ENST00000566117.1,ENST00000563002.1,ENST00000395762.2,ENST00000449195.1,ENST00000543915.2,ENST00000170630.2,ENST00000566318.1,ENST00000563787.1,ENST00000561946.1	chr16	27351506:27351594:27353441:27353580:27356189:27356341,	27353442	27353580	27353565	27353565	Frame_Shift_Del	T	-	p.V65fs
LIHC	TCGA-DD-A1EG-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509009	27509009	Frame_Shift_Del	T	-	p.S767fs
LIHC	TCGA-DD-A1EG-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27523069:27523222:27539918:27540042:27544611:27544708,	27539919	27540042	27539983	27539983	Frame_Shift_Del	G	-	p.A303fs
LIHC	TCGA-DD-A1EG-01	KIAA0556	ENST00000261588.4	chr16	27642385:27642483:27659924:27660056:27665928:27666019,27642385:27642483:27659924:27660056:27689049:27689139,	27659925	27660056	27660009	27660009	Frame_Shift_Del	G	-	p.G165fs
LIHC	TCGA-DD-A1EG-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000562408.1	chr16	28124224:28124371:28132990:28133083:28137009:28137169,28128638:28128783:28132990:28133083:28137009:28137169,	28132991	28133083	28133047	28133047	Frame_Shift_Del	T	-	p.K601fs
LIHC	TCGA-DD-A1EG-01	SULT1A1	ENST00000562058.1,ENST00000314752.7,ENST00000395609.1,ENST00000563493.1,ENST00000566189.1,ENST00000395607.1,ENST00000569554.1,ENST00000564818.1	chr16	28619611:28619709:28619798:28619924:28620028:28620100,	28619799	28619924	28619913	28619913	Frame_Shift_Del	C	-	p.V54fs
LIHC	TCGA-DD-A1EG-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28877808	28877808	Frame_Shift_Del	C	-	p.G131fs
LIHC	TCGA-DD-A1EG-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28878076	28878076	Frame_Shift_Del	G	-	p.G221fs
LIHC	TCGA-DD-A1EG-01	RABEP2	ENST00000358201.4,ENST00000544477.1,ENST00000357573.6	chr16	28917339:28917517:28919929:28920085:28922208:28922307,	28919930	28920085	28920010	28920010	Frame_Shift_Del	C	-	p.A389fs
LIHC	TCGA-DD-A1EG-01	KIF22	ENST00000400751.5,ENST00000569382.2,ENST00000400750.2,ENST00000561482.1,ENST00000160827.4	chr16	29814168:29814258:29814769:29814929:29815318:29815386,	29814770	29814929	29814828	29814828	Frame_Shift_Del	A	-	p.E435fs
LIHC	TCGA-DD-A1EG-01	MAZ	ENST00000219782.6	chr16	29819999:29820062:29820860:29821085:29821397:29821408,	29820861	29821085	29820918	29820918	Frame_Shift_Del	C	-	p.A446fs
LIHC	TCGA-DD-A1EG-01	MVP	ENST00000570234.1,ENST00000563915.1,ENST00000357402.5,ENST00000395353.1	chr16	29841835:29841995:29842198:29842394:29845053:29845071,	29842199	29842394	29842232	29842232	Frame_Shift_Del	C	-	p.V53fs
LIHC	TCGA-DD-A1EG-01	SEZ6L2	ENST00000537485.1,ENST00000350527.3,ENST00000568407.2,ENST00000308713.5,ENST00000346932.5	chr16	29889607:29889746:29891184:29891385:29896906:29897070,	29891185	29891385	29891305	29891305	Frame_Shift_Del	C	-	p.A485fs
LIHC	TCGA-DD-A1EG-01	SEZ6L2	ENST00000562159.1	chr16	29899860:29900046:29906579:29906781:29908142:29908232,	29906580	29906781	29906706	29906706	Frame_Shift_Del	G	-	p.R243fs
LIHC	TCGA-DD-A1EG-01	ASPHD1	ENST00000483405.1	chr16	29911699:29912062:29912872:29913241:29916172:29916286,	29912873	29913241	29913181	29913181	Frame_Shift_Del	C	-	p.P297fs
LIHC	TCGA-DD-A1EG-01	ASPHD1	ENST00000308748.5,ENST00000563177.1,ENST00000483405.1,ENST00000414952.2,ENST00000566693.1	chr16	29912872:29913241:29916172:29916286:29917108:29917208,	29916173	29916286	29916227	29916227	Frame_Shift_Del	G	-	p.W335fs
LIHC	TCGA-DD-A1EG-01	TMEM219	ENST00000575829.2,ENST00000279396.6,ENST00000602948.1,ENST00000566848.1,ENST00000414689.2,ENST00000561899.2,ENST00000570255.1	chr16	29974492:29974629:29974720:29974910:29979345:29979438,	29974721	29974910	29974732	29974732	Frame_Shift_Del	T	-	p.S59fs
LIHC	TCGA-DD-A1EG-01	PPP4C	ENST00000279387.7,ENST00000563200.1,ENST00000563732.1,ENST00000567040.1,ENST00000561610.1,ENST00000563597.1	chr16	30093804:30093855:30094066:30094168:30094714:30094726,	30094067	30094168	30094105	30094105	Frame_Shift_Del	G	-	p.M80fs
LIHC	TCGA-DD-A1EG-01	PPP4C	ENST00000566749.1	chr16	30093806:30093855:30094066:30094284:30094714:30094888,	30094067	30094284	30094105	30094105	Frame_Shift_Del	G	-	p.M80fs
LIHC	TCGA-DD-A1EG-01	PPP4C	ENST00000279387.7,ENST00000562222.1,ENST00000563732.1,ENST00000561610.1,ENST00000566749.1,ENST00000562664.1	chr16	30094714:30094888:30094975:30095102:30095986:30096094,	30094976	30095102	30095001	30095001	Frame_Shift_Del	C	-	p.S168fs
LIHC	TCGA-DD-A1EG-01	MAPK3	ENST00000490298.1,ENST00000395199.3,ENST00000478356.1,ENST00000263025.4,ENST00000403394.1,ENST00000395200.1,ENST00000484663.1	chr16	30128271:30128324:30128474:30128606:30128990:30129021,	30128475	30128606	30128491	30128491	Frame_Shift_Del	G	-	p.P183fs
LIHC	TCGA-DD-A1EG-01	MAPK3	ENST00000466521.1	chr16	30128271:30128324:30128457:30128606:30128990:30129021,	30128458	30128606	30128491	30128491	Frame_Shift_Del	G	-	p.P183fs
LIHC	TCGA-DD-A1EG-01	CORO1A	ENST00000219150.5,ENST00000568763.1,ENST00000565497.1,ENST00000570045.1	chr16	30199048:30199150:30199262:30199408:30199512:30199570,	30199263	30199408	30199307	30199307	Frame_Shift_Del	T	-	p.P302fs
LIHC	TCGA-DD-A1EG-01	CORO1A	ENST00000219150.5,ENST00000568763.1,ENST00000570045.1	chr16	30199512:30199570:30199681:30199897:30200180:30200194,	30199682	30199897	30199775	30199775	Frame_Shift_Del	C	-	p.P387fs
LIHC	TCGA-DD-A1EG-01	CORO1A	ENST00000219150.5,ENST00000568763.1,ENST00000570045.1	chr16	30199512:30199570:30199681:30199897:30200180:30200194,	30199682	30199897	30199839	30199839	Frame_Shift_Del	G	-	p.R408fs
LIHC	TCGA-DD-A1EG-01	SEPT1	ENST00000321367.3,ENST00000568577.1,ENST00000571393.1,ENST00000573615.1,ENST00000566517.1,ENST00000563957.2	chr16	30392659:30392794:30393080:30393204:30393413:30393500,	30393081	30393204	30393103	30393103	Frame_Shift_Del	C	-	p.D142fs
LIHC	TCGA-DD-A1EG-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000564946.1,ENST00000568754.1,ENST00000287463.4	chr16	30664234:30664424:30664685:30664729:30665550:30665660,	30664686	30664729	30664702	30664702	Frame_Shift_Del	C	-	p.T174fs
LIHC	TCGA-DD-A1EG-01	FBRS	ENST00000356166.6	chr16	30673879:30674180:30675535:30675837:30676035:30676241,	30675536	30675837	30675585	30675585	Frame_Shift_Del	C	-	p.P370fs
LIHC	TCGA-DD-A1EG-01	FBRS	ENST00000356166.6	chr16	30673879:30674180:30675535:30675837:30676035:30676241,	30675536	30675837	30675657	30675657	Frame_Shift_Del	C	-	p.P394fs
LIHC	TCGA-DD-A1EG-01	SRCAP	ENST00000483083.1,ENST00000395059.2,ENST00000262518.4	chr16	30731482:30731652:30732033:30732299:30732509:30732797,	30732034	30732299	30732218	30732218	Frame_Shift_Del	C	-	p.P1059fs
LIHC	TCGA-DD-A1EG-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30740286:30740552:30740690:30740893:30744600:30744770,	30740691	30740893	30740725	30740725	Frame_Shift_Del	C	-	p.P1988fs
LIHC	TCGA-DD-A1EG-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30744922:30745119:30745214:30745329:30745816:30745936,	30745215	30745329	30745296	30745296	Frame_Shift_Del	G	-	p.E2192fs
LIHC	TCGA-DD-A1EG-01	FUS	ENST00000380244.3	chr16	31193718:31193743:31193833:31193985:31195178:31195323,31193718:31193743:31193833:31193985:31195181:31195323,	31193834	31193985	31193846	31193846	Frame_Shift_Del	C	-	p.Y17fs
LIHC	TCGA-DD-A1EG-01	ITGAM	ENST00000544665.3	chr16	31308834:31308975:31309062:31309275:31332561:31332692,	31309063	31309275	31309099	31309099	Frame_Shift_Del	G	-	p.G512fs
LIHC	TCGA-DD-A1EG-01	ITGAM	ENST00000287497.8	chr16	31308834:31308975:31309065:31309275:31332561:31332692,	31309066	31309275	31309099	31309099	Frame_Shift_Del	G	-	p.G512fs
LIHC	TCGA-DD-A1EG-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31340548:31340624:31341118:31341226:31341401:31341485,	31341119	31341226	31341145	31341145	Frame_Shift_Del	C	-	p.L966fs
LIHC	TCGA-DD-A1EG-01	ITGAX	ENST00000268296.4,ENST00000562522.1	chr16	31383917:31383991:31384569:31384711:31388119:31388236,	31384570	31384711	31384585	31384585	Frame_Shift_Del	G	-	p.L794fs
LIHC	TCGA-DD-A1EG-01	ITGAX	ENST00000268296.4,ENST00000562522.1	chr16	31383917:31383991:31384569:31384711:31388119:31388236,	31384570	31384711	31384588	31384588	Frame_Shift_Del	G	-	p.V795fs
LIHC	TCGA-DD-A1EG-01	ITGAD	ENST00000389202.2	chr16	31434672:31434780:31434891:31434969:31435165:31435279,	31434892	31434969	31434897	31434897	Frame_Shift_Del	C	-	p.L991fs
LIHC	TCGA-DD-A1EG-01	SLC5A2	ENST00000568188.1	chr16	31499358:31499494:31499703:31500369:31500443:31500659,	31499704	31500369	31500244	31500244	Frame_Shift_Del	C	-	p.P442fs
LIHC	TCGA-DD-A1EG-01	SLC5A2	ENST00000330498.3	chr16	31500012:31500093:31500200:31500369:31500443:31500659,	31500201	31500369	31500244	31500244	Frame_Shift_Del	C	-	p.P442fs
LIHC	TCGA-DD-A1EG-01	C16orf58	ENST00000567994.1,ENST00000567578.1,ENST00000327237.2,ENST00000570164.1,ENST00000430477.2,ENST00000564807.1	chr16	31508199:31508271:31510622:31510728:31510813:31510846,	31510623	31510728	31510722	31510722	Frame_Shift_Del	A	-	p.F167fs
LIHC	TCGA-DD-A1EG-01	SHCBP1	ENST00000566016.1	chr16	46651545:46651661:46652116:46652284:46655168:46655263,	46652117	46652284	46652158	46652158	Frame_Shift_Del	A	-	p.L77fs
LIHC	TCGA-DD-A1EG-01	SHCBP1	ENST00000566016.1	chr16	46651545:46651661:46652116:46652284:46655168:46655263,	46652117	46652284	46652171	46652171	Frame_Shift_Del	T	-	p.T73fs
LIHC	TCGA-DD-A1EG-01	VPS35	ENST00000568784.2,ENST00000562420.1,ENST00000299138.7	chr16	46696154:46696394:46696894:46697074:46702841:46702964,	46696895	46697074	46696970	46696970	Frame_Shift_Del	A	-	p.F584fs
LIHC	TCGA-DD-A1EG-01	VPS35	ENST00000568784.2,ENST00000299138.7,ENST00000569950.1	chr16	46711226:46711310:46712854:46713068:46714582:46714765,	46712855	46713068	46713029	46713029	Frame_Shift_Del	A	-	p.F182fs
LIHC	TCGA-DD-A1EG-01	C16orf87	ENST00000285697.4,ENST00000564250.1	chr16	46836914:46836982:46843514:46843697:46858297:46858394,	46843515	46843697	46843531	46843531	Frame_Shift_Del	T	-	p.K110fs
LIHC	TCGA-DD-A1EG-01	DNAJA2	ENST00000563158.1,ENST00000317089.5	chr16	46993186:46993331:46998522:46998719:47001424:47001558,	46998523	46998719	46998685	46998685	Frame_Shift_Del	T	-	p.K204fs
LIHC	TCGA-DD-A1EG-01	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005339	47005339	Frame_Shift_Del	C	-	p.G95fs
LIHC	TCGA-DD-A1EG-01	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005339	47005339	Frame_Shift_Del	C	-	p.G95fs
LIHC	TCGA-DD-A1EG-01	ITFG1	ENST00000537184.2,ENST00000565262.1,ENST00000567957.1,ENST00000568047.1,ENST00000542691.1,ENST00000320640.6	chr16	47189582:47189689:47192783:47192901:47195660:47195743,	47192784	47192901	47192824	47192824	Frame_Shift_Del	A	-	p.F580fs
LIHC	TCGA-DD-A1EG-01	ITFG1	ENST00000544001.2	chr16	47189582:47189689:47192783:47192845:47195660:47195743,	47192784	47192845	47192824	47192824	Frame_Shift_Del	A	-	p.F580fs
LIHC	TCGA-DD-A1EG-01	PHKB	ENST00000299167.8,ENST00000566044.1,ENST00000566275.2	chr16	47697587:47697645:47699852:47699943:47703125:47703328,	47699853	47699943	47699924	47699924	Frame_Shift_Del	T	-	p.V803fs
LIHC	TCGA-DD-A1EG-01	ABCC12	ENST00000534418.1,ENST00000532494.1,ENST00000311303.3,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48134782:48134920:48138052:48138279:48139049:48139247,	48138053	48138279	48138266	48138266	Frame_Shift_Del	G	-	p.P896fs
LIHC	TCGA-DD-A1EG-01	LONP2	ENST00000285737.4,ENST00000535754.1,ENST00000416006.3	chr16	48292528:48292651:48295334:48295498:48296688:48296783,	48295335	48295498	48295434	48295434	Frame_Shift_Del	A	-	p.K276fs
LIHC	TCGA-DD-A1EG-01	ADCY7	ENST00000394697.2,ENST00000254235.3	chr16	50343458:50343557:50344597:50344791:50345603:50345697,	50344598	50344791	50344621	50344621	Frame_Shift_Del	G	-	p.L728fs
LIHC	TCGA-DD-A1EG-01	NKD1	ENST00000268459.3	chr16	50642204:50642271:50655512:50655619:50659395:50659491,	50655513	50655619	50655582	50655582	Frame_Shift_Del	A	-	p.E110fs
LIHC	TCGA-DD-A1EG-01	CYLD	ENST00000564326.1,ENST00000566206.1,ENST00000311559.9,ENST00000568704.2,ENST00000540145.1,ENST00000427738.3,ENST00000398568.2,ENST00000569418.1	chr16	50820765:50820857:50821696:50821763:50825468:50825601,	50821697	50821763	50821733	50821733	Frame_Shift_Del	T	-	p.I693fs
LIHC	TCGA-DD-A1EG-01	CHD9	ENST00000564845.1,ENST00000566029.1,ENST00000564255.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53243691:53243725:53256555:53256667:53260277:53260315,	53256556	53256667	53256585	53256585	Frame_Shift_Del	A	-	p.Q605fs
LIHC	TCGA-DD-A1EG-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000398510.3	chr16	53301838:53302038:53307537:53307697:53308124:53308214,	53307538	53307697	53307669	53307669	Frame_Shift_Del	A	-	p.K1618fs
LIHC	TCGA-DD-A1EG-01	RBL2	ENST00000544405.2,ENST00000561512.1,ENST00000379935.4,ENST00000544545.1,ENST00000262133.6	chr16	53495680:53495762:53496463:53496567:53498137:53498275,	53496464	53496567	53496500	53496500	Frame_Shift_Del	T	-	p.L498fs
LIHC	TCGA-DD-A1EG-01	RBL2	ENST00000544405.2,ENST00000561512.1,ENST00000379935.4,ENST00000544545.1,ENST00000262133.6	chr16	53495680:53495762:53496463:53496567:53498137:53498275,	53496464	53496567	53496539	53496539	Frame_Shift_Del	A	-	p.Q511fs
LIHC	TCGA-DD-A1EG-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53500969:53501081:53503827:53504097:53504294:53504575,	53503828	53504097	53504002	53504002	Frame_Shift_Del	T	-	p.V717fs
LIHC	TCGA-DD-A1EG-01	MMP2	ENST00000437642.2,ENST00000570308.1,ENST00000564864.1,ENST00000219070.4,ENST00000543485.1	chr16	55517927:55518076:55519210:55519339:55519515:55519688,	55519211	55519339	55519268	55519268	Frame_Shift_Del	C	-	p.A196fs
LIHC	TCGA-DD-A1EG-01	CES1	ENST00000422046.2,ENST00000360526.3,ENST00000565403.1,ENST00000361503.4,ENST00000563005.1	chr16	55854283:55854391:55855279:55855433:55857461:55857595,	55855280	55855433	55855369	55855369	Frame_Shift_Del	C	-	p.V201fs
LIHC	TCGA-DD-A1EG-01	CES1	ENST00000360526.3	chr16	55860062:55860207:55862678:55862886:55866915:55867008,	55862679	55862886	55862771	55862771	Frame_Shift_Del	A	-	p.F55fs
LIHC	TCGA-DD-A1EG-01	CES1	ENST00000422046.2,ENST00000361503.4	chr16	55860062:55860207:55862678:55862883:55866915:55867008,	55862679	55862883	55862771	55862771	Frame_Shift_Del	A	-	p.F55fs
LIHC	TCGA-DD-A1EG-01	BBS2	ENST00000562012.1,ENST00000568104.1,ENST00000245157.5	chr16	56533743:56533819:56534765:56534937:56535264:56535409,	56534766	56534937	56534894	56534894	Frame_Shift_Del	A	-	p.F423fs
LIHC	TCGA-DD-A1EG-01	BBS2	ENST00000562012.1,ENST00000568104.1,ENST00000245157.5	chr16	56533743:56533819:56534765:56534937:56535264:56535409,	56534766	56534937	56534909	56534909	Frame_Shift_Del	A	-	p.F418fs
LIHC	TCGA-DD-A1EG-01	BBS2	ENST00000569342.1,ENST00000568104.1,ENST00000245157.5	chr16	56545070:56545196:56548364:56548592:56553657:56553908,	56548365	56548592	56548432	56548432	Frame_Shift_Del	A	-	p.L93fs
LIHC	TCGA-DD-A1EG-01	HERPUD1	ENST00000344114.4,ENST00000300302.5	chr16	56969153:56969224:56969315:56969387:56970598:56970729,	56969316	56969387	56969374	56969374	Frame_Shift_Del	A	-	p.E96fs
LIHC	TCGA-DD-A1EG-01	HERPUD1	ENST00000570273.1,ENST00000439977.2,ENST00000565966.1,ENST00000569569.1,ENST00000563343.1	chr16	56969153:56969224:56969312:56969387:56970598:56970729,	56969313	56969387	56969374	56969374	Frame_Shift_Del	A	-	p.E96fs
LIHC	TCGA-DD-A1EG-01	HERPUD1	ENST00000563781.1,ENST00000300302.5,ENST00000564678.1,ENST00000379792.2,ENST00000439977.2	chr16	56970635:56970729:56973806:56974157:56976043:56976114,56973160:56973271:56973806:56974157:56976043:56976114,	56973807	56974157	56974079	56974079	Frame_Shift_Del	T	-	p.V276fs
LIHC	TCGA-DD-A1EG-01	NLRC5	ENST00000534927.1,ENST00000262510.6,ENST00000540182.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57111207:57111291:57111630:57111714:57111854:57111932,	57111631	57111714	57111638	57111638	Frame_Shift_Del	G	-	p.G1643fs
LIHC	TCGA-DD-A1EG-01	CPNE2	ENST00000537605.1	chr16	57126518:57126702:57144619:57144834:57147199:57147264,	57144620	57144834	57144698	57144698	Frame_Shift_Del	C	-	p.A15fs
LIHC	TCGA-DD-A1EG-01	ARL2BP	ENST00000563234.1,ENST00000219204.3	chr16	57279991:57280053:57282448:57282555:57283678:57283764,	57282449	57282555	57282542	57282542	Frame_Shift_Del	T	-	p.I65fs
LIHC	TCGA-DD-A1EG-01	CCDC102A	ENST00000258214.2	chr16	57552536:57552653:57554979:57555088:57559812:57560039,	57554980	57555088	57555045	57555045	Frame_Shift_Del	C	-	p.E286fs
LIHC	TCGA-DD-A1EG-01	KATNB1	ENST00000566611.1,ENST00000379661.3,ENST00000566726.1,ENST00000562592.1,ENST00000563127.1	chr16	57778305:57778423:57784738:57784839:57785172:57785214,	57784739	57784839	57784798	57784798	Frame_Shift_Del	G	-	p.G117fs
LIHC	TCGA-DD-A1EG-01	KATNB1	ENST00000566611.1,ENST00000379661.3,ENST00000566726.1,ENST00000562592.1,ENST00000563127.1	chr16	57785172:57785214:57785552:57785636:57785851:57785948,	57785553	57785636	57785588	57785588	Frame_Shift_Del	C	-	p.S156fs
LIHC	TCGA-DD-A1EG-01	CNGB1	ENST00000564448.1,ENST00000251102.8	chr16	57946833:57946898:57949152:57949239:57950032:57950083,	57949153	57949239	57949179	57949179	Frame_Shift_Del	G	-	p.L755fs
LIHC	TCGA-DD-A1EG-01	SETD6	ENST00000427443.1	chr16	58550516:58550576:58550711:58550832:58551954:58552135,58550516:58550576:58550711:58550832:58551923:58552135,	58550712	58550832	58550759	58550759	Frame_Shift_Del	C	-	p.S171fs
LIHC	TCGA-DD-A1EG-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58616959:58617086:58619241:58619410:58620448:58620652,	58619242	58619410	58619249	58619249	Frame_Shift_Del	A	-	p.C267fs
LIHC	TCGA-DD-A1EG-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58616959:58617086:58619241:58619410:58620448:58620652,	58619242	58619410	58619303	58619303	Frame_Shift_Del	T	-	p.T249fs
LIHC	TCGA-DD-A1EG-01	SLC38A7	ENST00000566953.1	chr16	58704948:58705148:58705999:58706147:58709843:58709926,58704016:58704071:58705999:58706147:58709843:58709926,	58706000	58706147	58706015	58706015	Frame_Shift_Del	A	-	p.L339fs
LIHC	TCGA-DD-A1EG-01	SLC38A7	ENST00000219320.4,ENST00000564010.1,ENST00000566598.1,ENST00000570101.1,ENST00000565785.1,ENST00000564100.1,ENST00000562149.1	chr16	58711229:58711328:58712236:58712378:58712599:58712667,	58712237	58712378	58712346	58712346	Frame_Shift_Del	C	-	p.A168fs
LIHC	TCGA-DD-A1EG-01	GOT2	ENST00000564400.1,ENST00000245206.5,ENST00000496461.1	chr16	58753099:58753159:58756053:58756182:58757649:58757806,	58756054	58756182	58756127	58756127	Frame_Shift_Del	C	-	p.G101fs
LIHC	TCGA-DD-A1EG-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000577730.1	chr16	61747744:61747862:61760997:61761119:61823249:61823386,	61760998	61761119	61761014	61761014	Frame_Shift_Del	T	-	p.N507fs
LIHC	TCGA-DD-A1EG-01	CDH11	ENST00000268603.4,ENST00000566827.1,ENST00000394156.3	chr16	65015950:65016204:65022059:65022247:65025670:65025838,	65022060	65022247	65022206	65022206	Frame_Shift_Del	C	-	p.E286fs
LIHC	TCGA-DD-A1EG-01	CDH11	ENST00000566827.1	chr16	65026817:65026937:65032464:65032759:65087706:65087831,	65032465	65032759	65032685	65032685	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A1EG-01	CES2	ENST00000561697.1,ENST00000317091.4,ENST00000417689.1,ENST00000568470.1	chr16	66972058:66972144:66973119:66973261:66974124:66974258,	66973120	66973261	66973191	66973191	Frame_Shift_Del	C	-	p.S182fs
LIHC	TCGA-DD-A1EG-01	CES2	ENST00000317091.4,ENST00000568470.1	chr16	66976007:66976152:66976550:66976688:66977201:66977274,	66976551	66976688	66976654	66976654	Frame_Shift_Del	T	-	p.P526fs
LIHC	TCGA-DD-A1EG-01	CBFB	ENST00000290858.6,ENST00000412916.2,ENST00000561924.2	chr16	67063854:67064080:67070541:67070658:67100584:67100699,67063629:67063716:67070541:67070658:67100584:67100663,	67070542	67070658	67070578	67070578	Frame_Shift_Del	T	-	p.F69fs
LIHC	TCGA-DD-A1EG-01	HSF4	ENST00000584272.1,ENST00000421453.1	chr16	67201104:67201125:67201363:67201502:67201726:67201820,	67201364	67201502	67201467	67201467	Frame_Shift_Del	G	-	p.E273fs
LIHC	TCGA-DD-A1EG-01	HSF4	ENST00000519224.1,ENST00000522870.1,ENST00000520528.1	chr16	67201104:67201125:67201377:67201502:67201726:67201820,67201282:67201305:67201377:67201502:67201726:67201820,	67201378	67201502	67201467	67201467	Frame_Shift_Del	G	-	p.E273fs
LIHC	TCGA-DD-A1EG-01	KIAA0895L	ENST00000561621.1	chr16	67210673:67210878:67211912:67212000:67212101:67212407,	67211913	67212000	67211925	67211925	Frame_Shift_Del	G	-	p.T413fs
LIHC	TCGA-DD-A1EG-01	KIAA0895L	ENST00000290881.7,ENST00000569349.1,ENST00000563918.1,ENST00000563902.1,ENST00000561679.1	chr16	67210673:67210878:67211912:67212010:67212101:67212407,	67211913	67212010	67211925	67211925	Frame_Shift_Del	G	-	p.T413fs
LIHC	TCGA-DD-A1EG-01	FHOD1	ENST00000567752.1,ENST00000561922.1,ENST00000258201.4	chr16	67271141:67271285:67271377:67271472:67271559:67271671,	67271378	67271472	67271389	67271389	Frame_Shift_Del	G	-	p.L280fs
LIHC	TCGA-DD-A1EG-01	LRRC36	ENST00000290940.7,ENST00000567723.1	chr16	67399206:67399258:67400919:67401360:67404846:67405145,67397492:67397617:67400919:67401360:67404846:67405145,	67400920	67401360	67400996	67400996	Frame_Shift_Del	T	-	p.S277fs
LIHC	TCGA-DD-A1EG-01	ATP6V0D1	ENST00000564788.1	chr16	67473176:67473254:67477001:67477081:67487446:67487618,	67477002	67477081	67477072	67477072	Frame_Shift_Del	A	-	p.F164fs
LIHC	TCGA-DD-A1EG-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645339	Frame_Shift_Del	A	-	p.K203fs
LIHC	TCGA-DD-A1EG-01	ACD	ENST00000393919.4,ENST00000602382.1,ENST00000602320.1,ENST00000219251.8,ENST00000602850.1	chr16	67692622:67692719:67692830:67692982:67693131:67693166,	67692831	67692982	67692868	67692868	Frame_Shift_Del	G	-	p.P286fs
LIHC	TCGA-DD-A1EG-01	ACD	ENST00000393919.4,ENST00000602382.1,ENST00000602320.1,ENST00000219251.8,ENST00000602850.1	chr16	67692622:67692719:67692830:67692982:67693131:67693166,	67692831	67692982	67692926	67692926	Frame_Shift_Del	C	-	p.A267fs
LIHC	TCGA-DD-A1EG-01	C16orf86	ENST00000602365.1,ENST00000403458.4	chr16	67700792:67700975:67701198:67701428:67701780:67702001,	67701199	67701428	67701242	67701242	Frame_Shift_Del	C	-	p.A49fs
LIHC	TCGA-DD-A1EG-01	C16orf86	ENST00000445068.1	chr16	67700792:67700975:67701129:67701428:67701780:67702001,	67701130	67701428	67701242	67701242	Frame_Shift_Del	C	-	p.A49fs
LIHC	TCGA-DD-A1EG-01	RANBP10	ENST00000602887.1,ENST00000602815.1,ENST00000411657.2,ENST00000602677.1,ENST00000602525.1,ENST00000317506.3	chr16	67771915:67771938:67778190:67778358:67805936:67805989,	67778191	67778358	67778297	67778297	Frame_Shift_Del	C	-	p.G154fs
LIHC	TCGA-DD-A1EG-01	TSNAXIP1	ENST00000563363.1	chr16	67848204:67848304:67855001:67855128:67858485:67858674,67848204:67848304:67855001:67855128:67859039:67859165,67848204:67848304:67855001:67855128:67857528:67857622,	67855002	67855128	67855113	67855113	Frame_Shift_Del	G	-	p.Q70fs
LIHC	TCGA-DD-A1EG-01	TSNAXIP1	ENST00000487120.1,ENST00000415766.3,ENST00000568990.1,ENST00000567852.1	chr16	67848204:67848304:67858485:67858682:67859039:67859165,67855001:67855128:67858485:67858682:67859039:67859165,	67858486	67858682	67858647	67858647	Frame_Shift_Del	A	-	p.K162fs
LIHC	TCGA-DD-A1EG-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67985725:67985940:67986086:67986328:67988545:67988676,	67986087	67986328	67986120	67986120	Frame_Shift_Del	C	-	p.G297fs
LIHC	TCGA-DD-A1EG-01	NFATC3	ENST00000379165.4,ENST00000575270.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4	chr16	68119560:68119687:68155889:68157024:68160350:68160513,	68155890	68157024	68156204	68156204	Frame_Shift_Del	T	-	p.F140fs
LIHC	TCGA-DD-A1EG-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68265198:68265279:68265384:68265597:68265704:68266006,	68265385	68265597	68265478	68265478	Frame_Shift_Del	G	-	p.P473fs
LIHC	TCGA-DD-A1EG-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68265198:68265279:68265384:68265597:68265704:68266006,	68265385	68265597	68265548	68265548	Frame_Shift_Del	G	-	p.P450fs
LIHC	TCGA-DD-A1EG-01	SLC7A6	ENST00000219343.6,ENST00000379152.3	chr16	68300504:68300624:68308593:68309152:68321648:68321774,	68308594	68309152	68308640	68308640	Frame_Shift_Del	G	-	p.R4fs
LIHC	TCGA-DD-A1EG-01	SLC7A6	ENST00000219343.6,ENST00000379152.3,ENST00000566454.1	chr16	68325460:68325564:68328607:68328704:68330266:68330416,	68328608	68328704	68328674	68328674	Frame_Shift_Del	T	-	p.R363fs
LIHC	TCGA-DD-A1EG-01	PRMT7	ENST00000339507.5,ENST00000568975.1,ENST00000441236.1,ENST00000449359.3	chr16	68381533:68381581:68382244:68382334:68386150:68386218,	68382245	68382334	68382290	68382290	Frame_Shift_Del	A	-	p.K457fs
LIHC	TCGA-DD-A1EG-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000569036.2,ENST00000429102.2	chr16	68713701:68713877:68714870:68714999:68716204:68716295,	68714871	68714999	68714876	68714876	Frame_Shift_Del	C	-	p.V291fs
LIHC	TCGA-DD-A1EG-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000569036.2,ENST00000429102.2	chr16	68713701:68713877:68714870:68714999:68716204:68716295,	68714871	68714999	68714990	68714990	Frame_Shift_Del	C	-	p.D329fs
LIHC	TCGA-DD-A1EG-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000429102.2	chr16	68714870:68714999:68716204:68716390:68718485:68718727,	68716205	68716390	68716275	68716275	Frame_Shift_Del	C	-	p.A356fs
LIHC	TCGA-DD-A1EG-01	TANGO6	ENST00000261778.1	chr16	68896847:68896964:68900981:68901123:68909056:68909193,	68900982	68901123	68901100	68901100	Frame_Shift_Del	G	-	p.R324fs
LIHC	TCGA-DD-A1EG-01	SNTB2	ENST00000528525.1	chr16	69279504:69279718:69294073:69294163:69304045:69304084,	69294074	69294163	69294101	69294101	Frame_Shift_Del	G	-	p.G315fs
LIHC	TCGA-DD-A1EG-01	SNTB2	ENST00000336278.4	chr16	69279504:69279718:69293952:69294163:69304045:69304084,	69293953	69294163	69294101	69294101	Frame_Shift_Del	G	-	p.G315fs
LIHC	TCGA-DD-A1EG-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000567239.1	chr16	69660305:69660431:69680930:69681489:69687138:69687331,	69680931	69681489	69680962	69680962	Frame_Shift_Del	G	-	p.M95fs
LIHC	TCGA-DD-A1EG-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000349945.1,ENST00000393742.2,ENST00000565301.1,ENST00000426654.2,ENST00000567239.1	chr16	69727988:69728142:69729038:69729282:69730262:69730481,	69729039	69729282	69729240	69729240	Frame_Shift_Del	A	-	p.Q1445fs
LIHC	TCGA-DD-A1EG-01	NQO1	ENST00000561500.1	chr16	69740898:69741110:69744977:69745184:69746930:69747032,	69744978	69745184	69744981	69744981	Frame_Shift_Del	T	-	p.K241fs
LIHC	TCGA-DD-A1EG-01	WWP2	ENST00000359154.2,ENST00000544162.1,ENST00000448661.1,ENST00000356003.2,ENST00000569174.1,ENST00000563618.1,ENST00000542271.1	chr16	69875926:69876023:69905706:69905834:69921941:69922061,	69905707	69905834	69905825	69905825	Frame_Shift_Del	A	-	p.N232fs
LIHC	TCGA-DD-A1EG-01	WWP2	ENST00000359154.2,ENST00000544162.1,ENST00000448661.1,ENST00000356003.2,ENST00000567579.1,ENST00000569297.1,ENST00000542271.1	chr16	69942663:69942753:69951611:69951786:69959332:69959387,	69951612	69951786	69951747	69951747	Frame_Shift_Del	G	-	p.Q380fs
LIHC	TCGA-DD-A1EG-01	PDPR	ENST00000398122.3,ENST00000288050.4,ENST00000568530.1,ENST00000565186.1	chr16	70162861:70163025:70164325:70164447:70166053:70166203,70162861:70163025:70164325:70164447:70165204:70165322,	70164326	70164447	70164370	70164370	Frame_Shift_Del	A	-	p.K219fs
LIHC	TCGA-DD-A1EG-01	AARS	ENST00000261772.8,ENST00000565361.2	chr16	70289637:70289739:70291935:70292120:70292882:70293089,	70291936	70292120	70292012	70292012	Frame_Shift_Del	C	-	p.V701fs
LIHC	TCGA-DD-A1EG-01	FUK	ENST00000378912.2,ENST00000288078.6	chr16	70502751:70502871:70503054:70503226:70504216:70504261,	70503055	70503226	70503064	70503064	Frame_Shift_Del	T	-	p.F266fs
LIHC	TCGA-DD-A1EG-01	FUK	ENST00000464499.1	chr16	70512453:70512553:70512699:70513306:70513481:70513584,	70512700	70513306	70513191	70513191	Frame_Shift_Del	C	-	p.A1013fs
LIHC	TCGA-DD-A1EG-01	FUK	ENST00000378912.2,ENST00000571514.1,ENST00000288078.6,ENST00000498702.1	chr16	70512453:70512553:70513082:70513306:70513481:70513584,	70513083	70513306	70513191	70513191	Frame_Shift_Del	C	-	p.A1013fs
LIHC	TCGA-DD-A1EG-01	COG4	ENST00000323786.5,ENST00000526700.1,ENST00000482252.1,ENST00000564415.1,ENST00000530314.1	chr16	70531123:70531290:70531839:70531958:70534860:70534992,	70531840	70531958	70531854	70531854	Frame_Shift_Del	C	-	p.E434fs
LIHC	TCGA-DD-A1EG-01	SF3B3	ENST00000302516.5	chr16	70562775:70563102:70564647:70564820:70566381:70566523,	70564648	70564820	70564745	70564745	Frame_Shift_Del	T	-	p.T165fs
LIHC	TCGA-DD-A1EG-01	SF3B3	ENST00000302516.5,ENST00000572365.1	chr16	70572297:70572363:70573006:70573110:70575571:70575737,	70573007	70573110	70573083	70573083	Frame_Shift_Del	T	-	p.L347fs
LIHC	TCGA-DD-A1EG-01	SF3B3	ENST00000302516.5	chr16	70601313:70601439:70602185:70602398:70602945:70603044,	70602186	70602398	70602320	70602320	Frame_Shift_Del	C	-	p.Y1029fs
LIHC	TCGA-DD-A1EG-01	SF3B3	ENST00000302516.5,ENST00000565990.2	chr16	70603908:70604052:70604997:70605102:70605575:70606202,	70604998	70605102	70605062	70605062	Frame_Shift_Del	G	-	p.R1158fs
LIHC	TCGA-DD-A1EG-01	VAC14	ENST00000564685.1,ENST00000261776.5,ENST00000568548.1,ENST00000568886.1	chr16	70731041:70731160:70732539:70732714:70765397:70765530,	70732540	70732714	70732611	70732611	Frame_Shift_Del	G	-	p.L589fs
LIHC	TCGA-DD-A1EG-01	HYDIN	ENST00000393567.2,ENST00000378856.4	chr16	70894591:70894804:70895950:70896158:70896987:70897073,	70895951	70896158	70896145	70896145	Frame_Shift_Del	T	-	p.K3861fs
LIHC	TCGA-DD-A1EG-01	HYDIN	ENST00000393567.2	chr16	70900071:70900232:70902472:70902691:70905939:70906082,	70902473	70902691	70902520	70902520	Frame_Shift_Del	C	-	p.V3755fs
LIHC	TCGA-DD-A1EG-01	HYDIN	ENST00000393567.2	chr16	70900071:70900232:70902472:70902691:70905939:70906082,	70902473	70902691	70902554	70902554	Frame_Shift_Del	G	-	p.P3743fs
LIHC	TCGA-DD-A1EG-01	HYDIN	ENST00000393567.2	chr16	71022295:71022415:71025220:71025299:71025972:71026113,	71025221	71025299	71025247	71025247	Frame_Shift_Del	T	-	p.T1280fs
LIHC	TCGA-DD-A1EG-01	AP1G1	ENST00000423132.2,ENST00000565009.1,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000564155.1,ENST00000393512.3	chr16	71772844:71773005:71773136:71773244:71779046:71779173,	71773137	71773244	71773189	71773189	Frame_Shift_Del	G	-	p.P685fs
LIHC	TCGA-DD-A1EG-01	AP1G1	ENST00000433195.2,ENST00000569748.1,ENST00000450149.2,ENST00000299980.4	chr16	71798548:71798629:71799391:71799487:71803525:71803602,	71799392	71799487	71799476	71799476	Frame_Shift_Del	T	-	p.Q218fs
LIHC	TCGA-DD-A1EG-01	ZNF821	ENST00000563827.1	chr16	71895681:71895845:71898040:71898145:71901814:71901940,71894500:71894575:71898040:71898145:71901795:71901940,	71898041	71898145	71898074	71898074	Frame_Shift_Del	C	-	p.G128fs
LIHC	TCGA-DD-A1EG-01	IST1	ENST00000606369.1,ENST00000541571.2,ENST00000538850.1,ENST00000535424.1,ENST00000544564.1,ENST00000538565.1,ENST00000439924.2,ENST00000378799.6	chr16	71956529:71956583:71958671:71958720:71961516:71961741,71957253:71957283:71958671:71958720:71961516:71961741,	71958672	71958720	71958715	71958715	Frame_Shift_Del	T	-	p.I299fs
LIHC	TCGA-DD-A1EG-01	IST1	ENST00000329908.8	chr16	71957253:71957283:71958675:71958720:71961516:71961741,	71958676	71958720	71958715	71958715	Frame_Shift_Del	T	-	p.I299fs
LIHC	TCGA-DD-A1EG-01	DHX38	ENST00000564307.1,ENST00000268482.3	chr16	72130825:72130908:72131575:72131680:72132543:72132691,	72131576	72131680	72131661	72131661	Frame_Shift_Del	C	-	p.S199fs
LIHC	TCGA-DD-A1EG-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830234	72830234	Frame_Shift_Del	G	-	p.P2116fs
LIHC	TCGA-DD-A1EG-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831238	72831238	Frame_Shift_Del	G	-	p.P1781fs
LIHC	TCGA-DD-A1EG-01	PSMD7	ENST00000567958.1,ENST00000568717.1,ENST00000540379.1,ENST00000568615.2,ENST00000219313.4	chr16	74334012:74334104:74334949:74335042:74335452:74335550,	74334950	74335042	74334988	74334988	Frame_Shift_Del	T	-	p.F69fs
LIHC	TCGA-DD-A1EG-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000562090.1,ENST00000447066.2	chr16	74524898:74525113:74526854:74527038:74528657:74528729,	74526855	74527038	74527010	74527010	Frame_Shift_Del	T	-	p.K360fs
LIHC	TCGA-DD-A1EG-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000562090.1,ENST00000447066.2	chr16	74528657:74528729:74530338:74530542:74537428:74537644,	74530339	74530542	74530476	74530476	Frame_Shift_Del	T	-	p.R281fs
LIHC	TCGA-DD-A1EG-01	RFWD3	ENST00000571750.1,ENST00000361070.4	chr16	74666420:74666571:74670243:74670475:74671753:74671868,	74670244	74670475	74670423	74670423	Frame_Shift_Del	C	-	p.G416fs
LIHC	TCGA-DD-A1EG-01	WDR59	ENST00000569229.1,ENST00000562371.1,ENST00000262144.6	chr16	74943422:74943555:74943719:74943815:74946095:74946133,	74943720	74943815	74943812	74943812	Frame_Shift_Del	G	-	p.L465fs
LIHC	TCGA-DD-A1EG-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000471618.1,ENST00000478060.1,ENST00000469667.1	chr16	76461348:76461496:76481908:76482112:76482663:76482848,	76481909	76482112	76481934	76481934	Frame_Shift_Del	A	-	p.G187fs
LIHC	TCGA-DD-A1EG-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000471618.1,ENST00000478060.1,ENST00000469667.1	chr16	76461348:76461496:76481908:76482112:76482663:76482848,	76481909	76482112	76481997	76481997	Frame_Shift_Del	T	-	p.S208fs
LIHC	TCGA-DD-A1EG-01	ADAMTS18	ENST00000282849.5	chr16	77323160:77323308:77325162:77325375:77326972:77327155,	77325163	77325375	77325262	77325262	Frame_Shift_Del	T	-	p.K1101fs
LIHC	TCGA-DD-A1EG-01	VAT1L	ENST00000302536.2	chr16	77913065:77913121:77918504:77918699:78005746:78005830,	77918505	77918699	77918629	77918629	Frame_Shift_Del	A	-	p.E336fs
LIHC	TCGA-DD-A1EG-01	WWOX	ENST00000408984.3,ENST00000539474.2,ENST00000355860.3,ENST00000402655.2,ENST00000406884.2,ENST00000561846.1,ENST00000562214.1,ENST00000565562.1	chr16	78133631:78133782:78142319:78142384:78143674:78143732,	78142320	78142384	78142353	78142353	Frame_Shift_Del	A	-	p.P47fs
LIHC	TCGA-DD-A1EG-01	WWOX	ENST00000408984.3,ENST00000566780.1,ENST00000569332.1	chr16	78148872:78149051:78198079:78198186:79245504:79246564,78148872:78149051:78198079:78198186:78420756:78420845,	78198080	78198186	78198139	78198139	Frame_Shift_Del	A	-	p.N157fs
LIHC	TCGA-DD-A1EG-01	CDYL2	ENST00000570137.2	chr16	80654659:80654832:80666915:80667133:80718434:80719026,	80666916	80667133	80666932	80666932	Frame_Shift_Del	T	-	p.N273fs
LIHC	TCGA-DD-A1EG-01	PKD1L2	ENST00000526632.1,ENST00000525539.1,ENST00000299598.7,ENST00000531391.1,ENST00000533478.1,ENST00000337114.4	chr16	81211411:81211588:81213249:81213391:81214755:81214876,	81213250	81213391	81213276	81213276	Frame_Shift_Del	C	-	p.G745fs
LIHC	TCGA-DD-A1EG-01	CMIP	ENST00000537098.3,ENST00000539778.2,ENST00000398040.4,ENST00000566513.1	chr16	81703746:81703850:81705570:81705675:81711879:81712233,	81705571	81705675	81705601	81705601	Frame_Shift_Del	C	-	p.H320fs
LIHC	TCGA-DD-A1EG-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81934216:81934385:81939007:81939112:81941289:81941379,	81939008	81939112	81939079	81939079	Frame_Shift_Del	G	-	p.Q478fs
LIHC	TCGA-DD-A1EG-01	HSD17B2	ENST00000199936.4,ENST00000569351.2	chr16	82069245:82069294:82101774:82101987:82104546:82104675,	82101775	82101987	82101782	82101782	Frame_Shift_Del	T	-	p.D91fs
LIHC	TCGA-DD-A1EG-01	HSD17B2	ENST00000199936.4,ENST00000569351.2	chr16	82069245:82069294:82101774:82101987:82104546:82104675,	82101775	82101987	82101856	82101856	Frame_Shift_Del	A	-	p.E116fs
LIHC	TCGA-DD-A1EG-01	DNAAF1	ENST00000567918.1,ENST00000563093.1,ENST00000334315.5,ENST00000378553.5,ENST00000570298.1	chr16	84182611:84182747:84183855:84183947:84188181:84188403,	84183856	84183947	84183944	84183944	Frame_Shift_Del	A	-	p.K117fs
LIHC	TCGA-DD-A1EG-01	ATP2C2	ENST00000416219.2,ENST00000420010.2,ENST00000262429.4,ENST00000565631.1	chr16	84473032:84473130:84474462:84474564:84476115:84476205,	84474463	84474564	84474490	84474490	Frame_Shift_Del	G	-	p.G413fs
LIHC	TCGA-DD-A1EG-01	ATP2C2	ENST00000567222.1,ENST00000416219.2,ENST00000567892.1,ENST00000420010.2,ENST00000262429.4,ENST00000565631.1	chr16	84495319:84495418:84495593:84495735:84497219:84497336,	84495594	84495735	84495653	84495653	Frame_Shift_Del	G	-	p.L909fs
LIHC	TCGA-DD-A1EG-01	GSE1	ENST00000393243.1,ENST00000253458.7,ENST00000405402.2,ENST00000412692.1	chr16	85690882:85691210:85694751:85695371:85696586:85696699,	85694752	85695371	85695251	85695251	Frame_Shift_Del	C	-	p.P715fs
LIHC	TCGA-DD-A1EG-01	IRF8	ENST00000562492.1,ENST00000569607.1,ENST00000268638.5	chr16	85952022:85952409:85953714:85953830:85954711:85954880,	85953715	85953830	85953799	85953799	Frame_Shift_Del	C	-	p.A358fs
LIHC	TCGA-DD-A1EG-01	MTHFSD	ENST00000566050.1	chr16	86582093:86582183:86585578:86585752:86588250:86588354,	86585579	86585752	86585670	86585670	Frame_Shift_Del	G	-	p.P68fs
LIHC	TCGA-DD-A1EG-01	MTHFSD	ENST00000561989.1,ENST00000566469.1,ENST00000565482.1,ENST00000322911.6,ENST00000562940.2,ENST00000360900.6	chr16	86582093:86582183:86585638:86585752:86588250:86588354,	86585639	86585752	86585670	86585670	Frame_Shift_Del	G	-	p.P68fs
LIHC	TCGA-DD-A1EG-01	MTHFSD	ENST00000566050.1	chr16	86582093:86582183:86585578:86585752:86588250:86588354,	86585579	86585752	86585708	86585708	Frame_Shift_Del	A	-	p.F55fs
LIHC	TCGA-DD-A1EG-01	MTHFSD	ENST00000561989.1,ENST00000566469.1,ENST00000565482.1,ENST00000322911.6,ENST00000562940.2,ENST00000360900.6	chr16	86582093:86582183:86585638:86585752:86588250:86588354,	86585639	86585752	86585708	86585708	Frame_Shift_Del	A	-	p.F55fs
LIHC	TCGA-DD-A1EG-01	MTHFSD	ENST00000543303.2,ENST00000381214.5,ENST00000546093.1,ENST00000568037.1,ENST00000564364.1	chr16	86582093:86582183:86585784:86585898:86588250:86588354,	86585785	86585898	86585845	86585845	Frame_Shift_Del	G	-	p.A59fs
LIHC	TCGA-DD-A1EG-01	KLHDC4	ENST00000353170.5,ENST00000567298.1,ENST00000564396.1,ENST00000270583.5,ENST00000565328.1,ENST00000569747.1,ENST00000566661.1,ENST00000562155.1	chr16	87764241:87764250:87782278:87782415:87788799:87788860,	87782279	87782415	87782304	87782304	Frame_Shift_Del	C	-	p.A161fs
LIHC	TCGA-DD-A1EG-01	CA5A	ENST00000309893.2	chr16	87936030:87936126:87938391:87938510:87960353:87960551,	87938392	87938510	87938432	87938432	Frame_Shift_Del	C	-	p.G140fs
LIHC	TCGA-DD-A1EG-01	BANP	ENST00000393207.1,ENST00000538234.1,ENST00000286122.7	chr16	88017689:88017865:88037900:88038017:88039695:88039789,	88037901	88038017	88037951	88037951	Frame_Shift_Del	T	-	p.I130fs
LIHC	TCGA-DD-A1EG-01	BANP	ENST00000393208.2,ENST00000479780.2,ENST00000439677.1,ENST00000355163.5,ENST00000355022.4	chr16	88017689:88017865:88039695:88039871:88052033:88052061,	88039696	88039871	88039739	88039739	Frame_Shift_Del	C	-	p.P167fs
LIHC	TCGA-DD-A1EG-01	ZFPM1	ENST00000562417.1,ENST00000562437.1,ENST00000569086.1	chr16	88520034:88520086:88552346:88552451:88580794:88580928,88520034:88520086:88552346:88552451:88555438:88555561,	88552347	88552451	88552431	88552431	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-DD-A1EG-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88666243:88666356:88675341:88675459:88677675:88677944,	88675342	88675459	88675388	88675388	Frame_Shift_Del	T	-	p.F379fs
LIHC	TCGA-DD-A1EG-01	CTU2	ENST00000312060.5,ENST00000378384.3,ENST00000453996.2,ENST00000567949.1,ENST00000566637.1,ENST00000564105.1	chr16	88779029:88779313:88779719:88779855:88780054:88780186,	88779720	88779855	88779749	88779749	Frame_Shift_Del	C	-	p.A327fs
LIHC	TCGA-DD-A1EG-01	PIEZO1	ENST00000301015.9	chr16	88788215:88788474:88788625:88788805:88788990:88789097,	88788626	88788805	88788633	88788633	Frame_Shift_Del	G	-	p.L1650fs
LIHC	TCGA-DD-A1EG-01	PIEZO1	ENST00000301015.9	chr16	88790354:88790379:88791416:88791488:88791823:88791927,	88791417	88791488	88791470	88791470	Frame_Shift_Del	C	-	p.G1394fs
LIHC	TCGA-DD-A1EG-01	ACSF3	ENST00000537290.1	chr16	89165118:89165171:89167069:89167755:89169011:89169056,89160290:89160404:89167069:89167755:89169011:89169056,89160311:89160400:89167069:89167755:89169011:89169056,	89167070	89167755	89167307	89167307	Frame_Shift_Del	C	-	p.S73fs
LIHC	TCGA-DD-A1EG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89346437	89346437	Frame_Shift_Del	G	-	p.P2171fs
LIHC	TCGA-DD-A1EG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89346962	89346962	Frame_Shift_Del	G	-	p.P1996fs
LIHC	TCGA-DD-A1EG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348150	89348150	Frame_Shift_Del	C	-	p.R1600fs
LIHC	TCGA-DD-A1EG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350488	89350488	Frame_Shift_Del	T	-	p.N821fs
LIHC	TCGA-DD-A1EG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350984	89350984	Frame_Shift_Del	T	-	p.S656fs
LIHC	TCGA-DD-A1EG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351754	89351754	Frame_Shift_Del	G	-	p.P399fs
LIHC	TCGA-DD-A1EG-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351810	89351810	Frame_Shift_Del	A	-	p.F380fs
LIHC	TCGA-DD-A1EG-01	SPG7	ENST00000563218.1,ENST00000566221.1,ENST00000268704.2	chr16	89611133:89611180:89613065:89613168:89614410:89614521,	89613066	89613168	89613126	89613126	Frame_Shift_Del	T	-	p.F504fs
LIHC	TCGA-DD-A1EG-01	DPEP1	ENST00000564281.1	chr16	89680080:89680127:89696712:89696922:89702315:89702448,	89696713	89696922	89696843	89696843	Frame_Shift_Del	C	-	p.P9fs
LIHC	TCGA-DD-A1EG-01	FANCA	ENST00000389301.3,ENST00000568369.1	chr16	89833549:89833645:89836244:89836432:89836573:89836667,	89836245	89836432	89836267	89836267	Frame_Shift_Del	C	-	p.D828fs
LIHC	TCGA-DD-A1EG-01	SPIRE2	ENST00000378247.3,ENST00000393062.2	chr16	89895105:89895202:89911729:89911773:89916711:89916970,	89911730	89911773	89911769	89911769	Frame_Shift_Del	C	-	p.A95fs
LIHC	TCGA-DD-A1EG-01	TCF25	ENST00000568409.1	chr16	89958600:89958683:89960135:89960266:89961445:89961545,89958600:89958683:89960135:89960266:89961490:89961545,	89960136	89960266	89960161	89960161	Frame_Shift_Del	A	-	p.S241fs
LIHC	TCGA-DD-A1EG-01	DEF8	ENST00000566079.1	chr16	90015210:90015222:90020696:90020784:90021576:90021650,90015824:90015921:90020696:90020784:90021576:90021674,	90020697	90020784	90020765	90020765	Frame_Shift_Del	C	-	p.V35fs
LIHC	TCGA-DD-A1EG-01	DEF8	ENST00000569803.1,ENST00000561784.1,ENST00000570182.1,ENST00000563795.1,ENST00000566820.1,ENST00000418391.2,ENST00000563594.1,ENST00000567243.1,ENST00000568096.1	chr16	90015210:90015222:90020650:90020784:90021576:90021650,90015824:90015921:90020650:90020784:90021576:90021674,	90020651	90020784	90020765	90020765	Frame_Shift_Del	C	-	p.V35fs
LIHC	TCGA-DD-A1EG-01	PRDM7	ENST00000407825.1,ENST00000449207.2	chr16	90128808:90128910:90130019:90130176:90133268:90133318,	90130020	90130176	90130024	90130024	Frame_Shift_Del	T	-	p.K168fs
LIHC	TCGA-DD-A1EG-01	VPS53	ENST00000573028.1,ENST00000437048.2,ENST00000291074.5,ENST00000446250.2,ENST00000389040.5,ENST00000571805.1	chr17	489509:489604:505034:505136:526772:526909,	505035	505136	505114	505114	Frame_Shift_Del	G	-	p.P380fs
LIHC	TCGA-DD-A1EG-01	ABR	ENST00000574437.1,ENST00000536794.2,ENST00000291107.2,ENST00000544583.2,ENST00000574544.1,ENST00000302538.5	chr17	961209:961285:961984:962107:970316:970482,	961985	962107	962021	962021	Frame_Shift_Del	G	-	p.P377fs
LIHC	TCGA-DD-A1EG-01	MYO1C	ENST00000572615.1,ENST00000545534.2,ENST00000575158.1,ENST00000359786.5,ENST00000361007.2,ENST00000438665.2	chr17	1372824:1372908:1373468:1373628:1373728:1373778,	1373469	1373628	1373594	1373594	Frame_Shift_Del	G	-	p.R801fs
LIHC	TCGA-DD-A1EG-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1704102	1704102	Frame_Shift_Del	T	-	p.M196fs
LIHC	TCGA-DD-A1EG-01	PAFAH1B1	ENST00000397195.5,ENST00000574816.1,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2583457:2583614:2585022:2585038,2579798:2579900:2583457:2583614:2585022:2585038,	2583458	2583614	2583513	2583513	Frame_Shift_Del	T	-	p.I353fs
LIHC	TCGA-DD-A1EG-01	RAP1GAP2	ENST00000540393.2,ENST00000542807.1,ENST00000254695.8,ENST00000366401.4	chr17	2888276:2888360:2894590:2894691:2898630:2898760,	2894591	2894691	2894659	2894659	Frame_Shift_Del	G	-	p.L294fs
LIHC	TCGA-DD-A1EG-01	SPATA22	ENST00000355380.4,ENST00000397168.3,ENST00000573128.1,ENST00000575375.1,ENST00000572969.1,ENST00000541913.1	chr17	3343536:3343632:3346467:3346565:3349765:3349895,	3346468	3346565	3346476	3346476	Frame_Shift_Del	A	-	p.Y298fs
LIHC	TCGA-DD-A1EG-01	SPATA22	ENST00000355380.4,ENST00000397168.3,ENST00000573128.1,ENST00000575375.1,ENST00000572969.1,ENST00000541913.1	chr17	3343536:3343632:3346467:3346565:3349765:3349895,	3346468	3346565	3346506	3346506	Frame_Shift_Del	C	-	p.D288fs
LIHC	TCGA-DD-A1EG-01	ASPA	ENST00000456349.2,ENST00000263080.2	chr17	3379427:3379689:3384896:3385092:3386792:3386886,	3384897	3385092	3385063	3385063	Frame_Shift_Del	T	-	p.F135fs
LIHC	TCGA-DD-A1EG-01	SPNS2	ENST00000329078.3	chr17	4416541:4416607:4428351:4428488:4433926:4434078,	4428352	4428488	4428398	4428398	Frame_Shift_Del	G	-	p.L161fs
LIHC	TCGA-DD-A1EG-01	SPNS2	ENST00000329078.3	chr17	4435836:4435979:4436271:4436424:4436537:4436727,	4436272	4436424	4436296	4436296	Frame_Shift_Del	G	-	p.L320fs
LIHC	TCGA-DD-A1EG-01	ALOX15	ENST00000576572.1	chr17	4541511:4541672:4542144:4542267:4542345:4542427,	4542145	4542267	4542262	4542262	Frame_Shift_Del	C	-	p.G142fs
LIHC	TCGA-DD-A1EG-01	CXCL16	ENST00000293778.6,ENST00000575168.1,ENST00000574412.1	chr17	4637883:4637947:4638386:4638803:4641702:4641785,	4638387	4638803	4638648	4638648	Frame_Shift_Del	G	-	p.L172fs
LIHC	TCGA-DD-A1EG-01	CAMTA2	ENST00000361571.5	chr17	4884519:4884654:4884972:4885126:4885383:4885455,4884519:4884654:4884972:4885126:4886051:4886187,	4884973	4885126	4884990	4884990	Frame_Shift_Del	C	-	p.G182fs
LIHC	TCGA-DD-A1EG-01	CAMTA2	ENST00000574606.2	chr17	4884519:4884654:4884972:4885037:4886051:4886187,	4884973	4885037	4884990	4884990	Frame_Shift_Del	C	-	p.G182fs
LIHC	TCGA-DD-A1EG-01	KIF1C	ENST00000574165.1,ENST00000320785.5	chr17	4903144:4903265:4903514:4903647:4904066:4904143,	4903515	4903647	4903576	4903576	Frame_Shift_Del	T	-	p.V12fs
LIHC	TCGA-DD-A1EG-01	USP6	ENST00000304328.5,ENST00000575709.1,ENST00000250066.6,ENST00000332776.4,ENST00000574788.1,ENST00000572949.1	chr17	5045297:5045436:5045691:5045797:5047984:5048158,	5045692	5045797	5045757	5045757	Frame_Shift_Del	G	-	p.W593fs
LIHC	TCGA-DD-A1EG-01	RABEP1	ENST00000546142.2,ENST00000341923.6,ENST00000408982.2	chr17	5185781:5185815:5211988:5212117:5235243:5235447,	5211989	5212117	5212019	5212019	Frame_Shift_Del	A	-	p.E22fs
LIHC	TCGA-DD-A1EG-01	DERL2	ENST00000571971.1,ENST00000576551.1	chr17	5383443:5383464:5383706:5383863:5384420:5384459,	5383707	5383863	5383732	5383732	Frame_Shift_Del	C	-	p.G166fs
LIHC	TCGA-DD-A1EG-01	DERL2	ENST00000575605.1	chr17	5383443:5383464:5383706:5383779:5384420:5384459,	5383707	5383779	5383732	5383732	Frame_Shift_Del	C	-	p.G166fs
LIHC	TCGA-DD-A1EG-01	DERL2	ENST00000571971.1,ENST00000576551.1	chr17	5383443:5383464:5383706:5383863:5384420:5384459,	5383707	5383863	5383774	5383774	Frame_Shift_Del	G	-	p.P152fs
LIHC	TCGA-DD-A1EG-01	DERL2	ENST00000575605.1	chr17	5383443:5383464:5383706:5383779:5384420:5384459,	5383707	5383779	5383774	5383774	Frame_Shift_Del	G	-	p.P152fs
LIHC	TCGA-DD-A1EG-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5461998	5461998	Frame_Shift_Del	A	-	p.F673fs
LIHC	TCGA-DD-A1EG-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462368	5462368	Frame_Shift_Del	G	-	p.L550fs
LIHC	TCGA-DD-A1EG-01	WSCD1	ENST00000576083.1,ENST00000317744.5	chr17	5973933:5973972:5983690:5984405:5991309:5991424,	5983691	5984405	5984029	5984029	Frame_Shift_Del	C	-	p.F17fs
LIHC	TCGA-DD-A1EG-01	AIPL1	ENST00000574913.1,ENST00000575265.1,ENST00000571740.1,ENST00000381129.3,ENST00000576776.1	chr17	6331637:6331826:6337238:6337418:6338328:6338472,	6337239	6337418	6337292	6337292	Frame_Shift_Del	G	-	p.L76fs
LIHC	TCGA-DD-A1EG-01	AIPL1	ENST00000570466.1	chr17	6331637:6331826:6337238:6337352:6338328:6338472,	6337239	6337352	6337292	6337292	Frame_Shift_Del	G	-	p.L76fs
LIHC	TCGA-DD-A1EG-01	KIAA0753	ENST00000361413.3,ENST00000570790.1,ENST00000542606.1	chr17	6524249:6524318:6526201:6526417:6526828:6526891,	6526202	6526417	6526276	6526276	Frame_Shift_Del	A	-	p.S344fs
LIHC	TCGA-DD-A1EG-01	SLC13A5	ENST00000573648.1,ENST00000293800.6,ENST00000381074.4,ENST00000433363.2	chr17	6597415:6597516:6599044:6599260:6604322:6604445,	6599045	6599260	6599181	6599181	Frame_Shift_Del	G	-	p.R307fs
LIHC	TCGA-DD-A1EG-01	DLG4	ENST00000491753.1	chr17	7095211:7095321:7096263:7096436:7096801:7096876,7094585:7094677:7096263:7096436:7096801:7096876,	7096264	7096436	7096300	7096300	Frame_Shift_Del	C	-	p.G653fs
LIHC	TCGA-DD-A1EG-01	EIF4A1	ENST00000578495.1	chr17	7478505:7478576:7479847:7480010:7480373:7480428,	7479848	7480010	7479969	7479969	Frame_Shift_Del	C	-	p.T158fs
LIHC	TCGA-DD-A1EG-01	EIF4A1	ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000582746.1,ENST00000577731.1,ENST00000581384.1,ENST00000580888.1,ENST00000577269.1,ENST00000585024.1,ENST00000583802.1	chr17	7477865:7477996:7479841:7480010:7480373:7480428,7478505:7478576:7479841:7480010:7480373:7480428,	7479842	7480010	7479969	7479969	Frame_Shift_Del	C	-	p.T158fs
LIHC	TCGA-DD-A1EG-01	KDM6B	ENST00000570632.1,ENST00000254846.5,ENST00000448097.2	chr17	7748631:7748774:7748867:7749009:7749189:7749288,	7748868	7749009	7748930	7748930	Frame_Shift_Del	G	-	p.G21fs
LIHC	TCGA-DD-A1EG-01	PER1	ENST00000317276.4	chr17	8045966:8046153:8046583:8047194:8048068:8048165,	8046584	8047194	8046676	8046676	Frame_Shift_Del	G	-	p.R994fs
LIHC	TCGA-DD-A1EG-01	AURKB	ENST00000578549.1,ENST00000580998.1,ENST00000535053.1,ENST00000316199.6,ENST00000578753.1,ENST00000534871.1,ENST00000585124.1	chr17	8108278:8108362:8108533:8108708:8109808:8109957,	8108534	8108708	8108608	8108608	Frame_Shift_Del	A	-	p.C264fs
LIHC	TCGA-DD-A1EG-01	CTC1	ENST00000579066.1,ENST00000449476.2,ENST00000315684.8	chr17	8137951:8137973:8138066:8138244:8138370:8138603,	8138067	8138244	8138075	8138075	Frame_Shift_Del	G	-	p.L537fs
LIHC	TCGA-DD-A1EG-01	MYH10	ENST00000396239.1,ENST00000360416.3,ENST00000269243.4,ENST00000379980.4	chr17	8438704:8438819:8439075:8439249:8445424:8445598,	8439076	8439249	8439196	8439196	Frame_Shift_Del	T	-	p.K553fs
LIHC	TCGA-DD-A1EG-01	STX8	ENST00000306357.4,ENST00000574431.1,ENST00000575858.1	chr17	9281868:9281970:9395145:9395238:9408354:9408479,	9395146	9395238	9395189	9395189	Frame_Shift_Del	T	-	p.K166fs
LIHC	TCGA-DD-A1EG-01	USP43	ENST00000574408.1	chr17	9569964:9570068:9578207:9578300:9580062:9580198,9559752:9559851:9578207:9578300:9580062:9580198,	9578208	9578300	9578283	9578283	Frame_Shift_Del	C	-	p.I272fs
LIHC	TCGA-DD-A1EG-01	DNAH9	ENST00000608377.1,ENST00000396001.2,ENST00000262442.4	chr17	11827130:11827258:11833182:11833410:11835330:11835522,	11833183	11833410	11833357	11833357	Frame_Shift_Del	C	-	p.P4019fs
LIHC	TCGA-DD-A1EG-01	MAP2K4	ENST00000581941.1	chr17	11958205:11958308:11984672:11984847:11998891:11999011,11924292:11924318:11984672:11984847:11998891:11999011,11973072:11973166:11984672:11984847:11998891:11999011,	11984673	11984847	11984732	11984732	Frame_Shift_Del	A	-	p.Q104fs
LIHC	TCGA-DD-A1EG-01	MAP2K4	ENST00000353533.5,ENST00000602686.1,ENST00000415385.3,ENST00000602375.1,ENST00000602811.1,ENST00000536413.2,ENST00000602305.1	chr17	12028610:12028688:12032455:12032604:12043155:12043201,	12032456	12032604	12032574	12032574	Frame_Shift_Del	C	-	p.S348fs
LIHC	TCGA-DD-A1EG-01	NCOR1	ENST00000395857.3,ENST00000470782.1,ENST00000395849.2,ENST00000458113.2,ENST00000268712.3	chr17	15961784:15961913:15964714:15965208:15965418:15965584,	15964715	15965208	15964860	15964860	Frame_Shift_Del	T	-	p.K1912fs
LIHC	TCGA-DD-A1EG-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16024365:16024583:16029395:16029520:16040624:16040726,	16029396	16029520	16029416	16029416	Frame_Shift_Del	T	-	p.K538fs
LIHC	TCGA-DD-A1EG-01	DRG2	ENST00000577771.1,ENST00000582419.1,ENST00000583162.1,ENST00000225729.3,ENST00000580055.1,ENST00000395726.4,ENST00000579224.1	chr17	17997126:17997287:18001583:18001673:18002330:18002364,	18001584	18001673	18001657	18001657	Frame_Shift_Del	T	-	p.I100fs
LIHC	TCGA-DD-A1EG-01	MYO15A	ENST00000578472.1	chr17	18061659:18061679:18061836:18061952:18062238:18062311,	18061837	18061952	18061870	18061870	Frame_Shift_Del	G	-	p.G3001fs
LIHC	TCGA-DD-A1EG-01	MYO15A	ENST00000578472.1	chr17	18061659:18061679:18061836:18061952:18062238:18062311,	18061837	18061952	18061948	18061948	Frame_Shift_Del	C	-	p.P3027fs
LIHC	TCGA-DD-A1EG-01	MYO15A	ENST00000433411.3	chr17	18075470:18075604:18077094:18077235:18082082:18083116,18075470:18075604:18077094:18077235:18082030:18082184,18075520:18075730:18077094:18077235:18082082:18083116,	18077095	18077235	18077147	18077147	Frame_Shift_Del	G	-	p.R3468fs
LIHC	TCGA-DD-A1EG-01	LLGL1	ENST00000316843.4,ENST00000479155.1	chr17	18137589:18137722:18137962:18138017:18138152:18138307,	18137963	18138017	18137968	18137968	Frame_Shift_Del	T	-	p.F286fs
LIHC	TCGA-DD-A1EG-01	FLII	ENST00000478416.1,ENST00000584444.1,ENST00000578101.1,ENST00000578558.1,ENST00000579294.1,ENST00000327031.4	chr17	18157410:18157496:18157834:18157996:18158082:18158168,	18157835	18157996	18157964	18157964	Frame_Shift_Del	T	-	p.N149fs
LIHC	TCGA-DD-A1EG-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181472	18181472	Frame_Shift_Del	G	-	p.Q782fs
LIHC	TCGA-DD-A1EG-01	TOP3A	ENST00000321105.5,ENST00000542570.1,ENST00000583804.2,ENST00000584582.1,ENST00000580095.1,ENST00000582981.1	chr17	18194155:18194341:18195958:18196166:18198016:18198099,	18195959	18196166	18195992	18195992	Frame_Shift_Del	G	-	p.P416fs
LIHC	TCGA-DD-A1EG-01	LGALS9C	ENST00000577691.1,ENST00000579773.1,ENST00000412421.2,ENST00000328114.6	chr17	18390960:18391071:18392254:18392350:18394046:18394082,	18392255	18392350	18392346	18392346	Frame_Shift_Del	A	-	p.Q179fs
LIHC	TCGA-DD-A1EG-01	FBXW10	ENST00000574478.1,ENST00000395667.1,ENST00000308799.4,ENST00000395665.4	chr17	18671846:18671989:18673239:18673398:18675724:18675947,	18673240	18673398	18673390	18673390	Frame_Shift_Del	G	-	p.Q695fs
LIHC	TCGA-DD-A1EG-01	EPN2	ENST00000347697.2,ENST00000495155.1,ENST00000395628.2	chr17	19185291:19185390:19186262:19187027:19213197:19213310,	19186263	19187027	19186512	19186512	Frame_Shift_Del	C	-	p.A27fs
LIHC	TCGA-DD-A1EG-01	AKAP10	ENST00000225737.6	chr17	19823348:19823431:19827720:19827830:19839598:19839743,19823364:19823431:19827720:19827830:19835117:19835179,	19827721	19827830	19827793	19827793	Frame_Shift_Del	T	-	p.N560fs
LIHC	TCGA-DD-A1EG-01	AKAP10	ENST00000578898.1	chr17	19823364:19823431:19827720:19827825:19835117:19835179,	19827721	19827825	19827793	19827793	Frame_Shift_Del	T	-	p.N560fs
LIHC	TCGA-DD-A1EG-01	KSR1	ENST00000509603.2,ENST00000398988.3,ENST00000268763.6,ENST00000398982.2,ENST00000319524.6	chr17	25936221:25936355:25937092:25937224:25938519:25938655,	25937093	25937224	25937164	25937164	Frame_Shift_Del	C	-	p.T651fs
LIHC	TCGA-DD-A1EG-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
LIHC	TCGA-DD-A1EG-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26490568:26490654:26495473:26495683:26499542:26499644,	26495474	26495683	26495601	26495601	Frame_Shift_Del	T	-	p.I322fs
LIHC	TCGA-DD-A1EG-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26490568:26490654:26495473:26495683:26499542:26499644,	26495474	26495683	26495617	26495617	Frame_Shift_Del	G	-	p.V327fs
LIHC	TCGA-DD-A1EG-01	TMEM97	ENST00000583381.1	chr17	26646358:26646391:26652528:26652673:26653559:26653901,	26652529	26652673	26652591	26652591	Frame_Shift_Del	A	-	p.P63fs
LIHC	TCGA-DD-A1EG-01	SLC13A2	ENST00000545060.1,ENST00000579281.1,ENST00000314669.5,ENST00000459818.2,ENST00000537681.1,ENST00000444914.3	chr17	26818747:26818870:26820588:26820807:26821034:26821123,	26820589	26820807	26820758	26820758	Frame_Shift_Del	T	-	p.F400fs
LIHC	TCGA-DD-A1EG-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26850978:26851110:26851520:26851985:26854268:26854379,	26851521	26851985	26851587	26851587	Frame_Shift_Del	C	-	p.P65fs
LIHC	TCGA-DD-A1EG-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26850978:26851110:26851520:26851985:26854268:26854379,	26851521	26851985	26851701	26851701	Frame_Shift_Del	T	-	p.F102fs
LIHC	TCGA-DD-A1EG-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26941899:26942264:26942681:26942816:26943113:26943215,	26942682	26942816	26942782	26942782	Frame_Shift_Del	T	-	p.N2142fs
LIHC	TCGA-DD-A1EG-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26951250:26951408:26955282:26955577:26958496:26958696,	26955283	26955577	26955363	26955363	Frame_Shift_Del	C	-	p.G1505fs
LIHC	TCGA-DD-A1EG-01	SDF2	ENST00000587338.1	chr17	26976263:26976294:26982304:26982501:26989063:26989150,26978503:26978595:26982304:26982501:26988743:26988837,26978503:26978595:26982304:26982501:26989063:26989150,	26982305	26982501	26982431	26982431	Frame_Shift_Del	C	-	p.G74fs
LIHC	TCGA-DD-A1EG-01	CRYBA1	ENST00000225387.3	chr17	27577199:27577318:27579081:27579223:27580657:27580800,	27579082	27579223	27579208	27579208	Frame_Shift_Del	C	-	p.R114fs
LIHC	TCGA-DD-A1EG-01	TAOK1	ENST00000261716.3	chr17	27834913:27835150:27837881:27838010:27844470:27844674,	27837882	27838010	27837906	27837906	Frame_Shift_Del	A	-	p.K535fs
LIHC	TCGA-DD-A1EG-01	TAOK1	ENST00000261716.3	chr17	27834913:27835150:27837881:27838010:27844470:27844674,	27837882	27838010	27837972	27837972	Frame_Shift_Del	A	-	p.K556fs
LIHC	TCGA-DD-A1EG-01	SSH2	ENST00000592397.1,ENST00000579040.1,ENST00000394848.1,ENST00000324677.7,ENST00000577483.1,ENST00000540801.1,ENST00000269033.3	chr17	28004736:28004759:28011580:28011702:28022476:28022541,	28011581	28011702	28011648	28011648	Frame_Shift_Del	A	-	p.S111fs
LIHC	TCGA-DD-A1EG-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601120	28601120	Frame_Shift_Del	G	-	p.P247fs
LIHC	TCGA-DD-A1EG-01	CRLF3	ENST00000578692.1,ENST00000544695.1,ENST00000324238.6	chr17	29112936:29113049:29119457:29119590:29120467:29120690,	29119458	29119590	29119568	29119568	Frame_Shift_Del	C	-	p.G283fs
LIHC	TCGA-DD-A1EG-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29185178:29185341:29187450:29187630:29192721:29192818,	29187451	29187630	29187483	29187483	Frame_Shift_Del	A	-	p.K997fs
LIHC	TCGA-DD-A1EG-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29185178:29185341:29187450:29187630:29192721:29192818,	29187451	29187630	29187545	29187545	Frame_Shift_Del	A	-	p.S1017fs
LIHC	TCGA-DD-A1EG-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220776	29220776	Frame_Shift_Del	A	-	p.G1635fs
LIHC	TCGA-DD-A1EG-01	RAB11FIP4	ENST00000394744.2,ENST00000325874.8	chr17	29844668:29844895:29848183:29848378:29848932:29849067,	29848184	29848378	29848303	29848303	Frame_Shift_Del	C	-	p.A228fs
LIHC	TCGA-DD-A1EG-01	UTP6	ENST00000261708.4,ENST00000477128.1	chr17	30200691:30200772:30202252:30202432:30205268:30205346,	30202253	30202432	30202283	30202283	Frame_Shift_Del	A	-	p.F425fs
LIHC	TCGA-DD-A1EG-01	SUZ12	ENST00000322652.5,ENST00000580398.1	chr17	30315338:30315516:30320260:30320352:30320883:30321027,	30320261	30320352	30320298	30320298	Frame_Shift_Del	A	-	p.R413fs
LIHC	TCGA-DD-A1EG-01	PSMD11	ENST00000261712.3,ENST00000457654.2,ENST00000578397.1	chr17	30800818:30800963:30801781:30801842:30804538:30804601,	30801782	30801842	30801834	30801834	Frame_Shift_Del	G	-	p.G281fs
LIHC	TCGA-DD-A1EG-01	PSMD11	ENST00000261712.3,ENST00000457654.2	chr17	30804538:30804601:30806268:30806394:30806868:30806904,	30806269	30806394	30806379	30806379	Frame_Shift_Del	T	-	p.P341fs
LIHC	TCGA-DD-A1EG-01	SLFN5	ENST00000542451.1	chr17	33570107:33570162:33585669:33586721:33587989:33588115,	33585670	33586721	33586046	33586046	Frame_Shift_Del	T	-	p.L113fs
LIHC	TCGA-DD-A1EG-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749730	33749730	Frame_Shift_Del	A	-	p.F106fs
LIHC	TCGA-DD-A1EG-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749932	33749932	Frame_Shift_Del	T	-	p.K39fs
LIHC	TCGA-DD-A1EG-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749957	33749957	Frame_Shift_Del	T	-	p.M31fs
LIHC	TCGA-DD-A1EG-01	SLFN13	ENST00000285013.6	chr17	33770807:33770939:33771633:33772712:33774286:33774413,	33771634	33772712	33772446	33772446	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-DD-A1EG-01	SLFN13	ENST00000530782.1	chr17	33771633:33771720:33772391:33772712:33774286:33774413,	33772392	33772712	33772446	33772446	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-DD-A1EG-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806222	33806222	Frame_Shift_Del	T	-	p.K336fs
LIHC	TCGA-DD-A1EG-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806926	33806926	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A1EG-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33807084	33807084	Frame_Shift_Del	T	-	p.M49fs
LIHC	TCGA-DD-A1EG-01	AP2B1	ENST00000592191.1,ENST00000262325.7,ENST00000589344.1,ENST00000312678.8,ENST00000537622.2,ENST00000592545.1,ENST00000545922.2,ENST00000538556.1	chr17	33966613:33966779:33968895:33968994:33977548:33977808,	33968896	33968994	33968932	33968932	Frame_Shift_Del	T	-	p.F492fs
LIHC	TCGA-DD-A1EG-01	AP2B1	ENST00000589344.1,ENST00000312678.8,ENST00000537622.2,ENST00000592545.1,ENST00000545922.2	chr17	33984753:33984810:33997875:33997917:33998772:33998919,	33997876	33997917	33997894	33997894	Frame_Shift_Del	G	-	p.G671fs
LIHC	TCGA-DD-A1EG-01	CACNB1	ENST00000577582.1	chr17	37340577:37340636:37341036:37341117:37342748:37342825,	37341037	37341117	37341100	37341100	Frame_Shift_Del	G	-	p.P222fs
LIHC	TCGA-DD-A1EG-01	CACNB1	ENST00000344140.5	chr17	37341036:37341117:37342202:37342357:37342748:37342825,	37342203	37342357	37342261	37342261	Frame_Shift_Del	C	-	p.S242fs
LIHC	TCGA-DD-A1EG-01	STAC2	ENST00000584501.1	chr17	37373336:37373426:37374321:37374426:37381665:37381921,	37374322	37374426	37374362	37374362	Frame_Shift_Del	A	-	p.F53fs
LIHC	TCGA-DD-A1EG-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37588194:37588269:37590501:37590573:37595417:37595446,	37590502	37590573	37590565	37590565	Frame_Shift_Del	T	-	p.N146fs
LIHC	TCGA-DD-A1EG-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37881959:37882106:37882814:37882912:37883067:37883169,	37882815	37882912	37882888	37882888	Frame_Shift_Del	C	-	p.D952fs
LIHC	TCGA-DD-A1EG-01	PSMD3	ENST00000541736.1,ENST00000415039.3,ENST00000264639.4	chr17	38140711:38140737:38142827:38142965:38144935:38145072,	38142828	38142965	38142888	38142888	Frame_Shift_Del	C	-	p.P158fs
LIHC	TCGA-DD-A1EG-01	CASC3	ENST00000264645.7	chr17	38324102:38324201:38324455:38324670:38325576:38325632,	38324456	38324670	38324506	38324506	Frame_Shift_Del	C	-	p.P603fs
LIHC	TCGA-DD-A1EG-01	TOP2A	ENST00000423485.1	chr17	38548836:38548989:38551700:38551791:38552534:38552717,	38551701	38551791	38551710	38551710	Frame_Shift_Del	T	-	p.R1268fs
LIHC	TCGA-DD-A1EG-01	HAP1	ENST00000310778.5	chr17	39883304:39883396:39883549:39883705:39884013:39884088,	39883550	39883705	39883647	39883647	Frame_Shift_Del	C	-	p.G445fs
LIHC	TCGA-DD-A1EG-01	JUP	ENST00000393930.1,ENST00000393931.3,ENST00000310706.5	chr17	39921174:39921319:39923630:39923832:39925220:39925375,	39923631	39923832	39923725	39923725	Frame_Shift_Del	T	-	p.K272fs
LIHC	TCGA-DD-A1EG-01	FKBP10	ENST00000321562.4,ENST00000455106.1,ENST00000490938.1,ENST00000489591.1,ENST00000544340.1	chr17	39976520:39976713:39977198:39977341:39977905:39978069,	39977199	39977341	39977311	39977311	Frame_Shift_Del	C	-	p.P458fs
LIHC	TCGA-DD-A1EG-01	DHX58	ENST00000586522.1,ENST00000251642.3	chr17	40257035:40257185:40257753:40258007:40259621:40259813,	40257754	40258007	40257896	40257896	Frame_Shift_Del	C	-	p.G370fs
LIHC	TCGA-DD-A1EG-01	KCNH4	ENST00000607371.1	chr17	40308912:40309136:40311752:40312453:40314265:40314339,	40311753	40312453	40312113	40312113	Frame_Shift_Del	G	-	p.P1000fs
LIHC	TCGA-DD-A1EG-01	KCNH4	ENST00000264661.3	chr17	40308912:40309136:40311748:40312453:40314265:40314339,	40311749	40312453	40312113	40312113	Frame_Shift_Del	G	-	p.P1000fs
LIHC	TCGA-DD-A1EG-01	KCNH4	ENST00000607371.1	chr17	40308912:40309136:40311752:40312453:40314265:40314339,	40311753	40312453	40312169	40312169	Frame_Shift_Del	G	-	p.P981fs
LIHC	TCGA-DD-A1EG-01	KCNH4	ENST00000264661.3	chr17	40308912:40309136:40311748:40312453:40314265:40314339,	40311749	40312453	40312169	40312169	Frame_Shift_Del	G	-	p.P981fs
LIHC	TCGA-DD-A1EG-01	STAT5B	ENST00000468312.1	chr17	40379606:40379703:40384017:40384155:40428265:40428424,	40384018	40384155	40384068	40384068	Frame_Shift_Del	A	-	p.F26fs
LIHC	TCGA-DD-A1EG-01	STAT5A	ENST00000588868.1,ENST00000452307.2,ENST00000444283.1,ENST00000590949.1,ENST00000478897.1,ENST00000345506.4	chr17	40441419:40441557:40441883:40442040:40443989:40444055,	40441884	40442040	40441996	40441996	Frame_Shift_Del	T	-	p.F81fs
LIHC	TCGA-DD-A1EG-01	ATP6V0A1	ENST00000264649.6,ENST00000393829.2,ENST00000343619.4,ENST00000544137.1,ENST00000537728.1,ENST00000546249.1,ENST00000585525.1	chr17	40639364:40639385:40642504:40642655:40646351:40646491,	40642505	40642655	40642562	40642562	Frame_Shift_Del	C	-	p.P362fs
LIHC	TCGA-DD-A1EG-01	TUBG1	ENST00000251413.3,ENST00000591509.1	chr17	40764101:40764161:40764444:40764524:40764964:40765091,	40764445	40764524	40764456	40764456	Frame_Shift_Del	G	-	p.L137fs
LIHC	TCGA-DD-A1EG-01	TUBG2	ENST00000588870.1,ENST00000251412.7	chr17	40811851:40811964:40812166:40812334:40812656:40812725,	40812167	40812334	40812243	40812243	Frame_Shift_Del	C	-	p.S80fs
LIHC	TCGA-DD-A1EG-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40940698:40940815:40945609:40945747:40946631:40946686,	40945610	40945747	40945649	40945649	Frame_Shift_Del	T	-	p.F733fs
LIHC	TCGA-DD-A1EG-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40946631:40946686:40946789:40947400:40947478:40947539,	40946790	40947400	40946901	40946901	Frame_Shift_Del	C	-	p.T821fs
LIHC	TCGA-DD-A1EG-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40946631:40946686:40946789:40947400:40947478:40947539,	40946790	40947400	40947166	40947166	Frame_Shift_Del	C	-	p.C909fs
LIHC	TCGA-DD-A1EG-01	PSME3	ENST00000589469.1,ENST00000543428.1,ENST00000592169.1,ENST00000590720.1,ENST00000541124.1,ENST00000441946.2,ENST00000293362.3,ENST00000545225.1	chr17	40990961:40991029:40991128:40991183:40991310:40991320,	40991129	40991183	40991175	40991175	Frame_Shift_Del	C	-	p.P210fs
LIHC	TCGA-DD-A1EG-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41243876	41243876	Frame_Shift_Del	G	-	p.P928fs
LIHC	TCGA-DD-A1EG-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244434	41244434	Frame_Shift_Del	T	-	p.E742fs
LIHC	TCGA-DD-A1EG-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41341604:41341819:41342625:41342793:41343388:41343598,	41342626	41342793	41342677	41342677	Frame_Shift_Del	C	-	p.G249fs
LIHC	TCGA-DD-A1EG-01	DHX8	ENST00000262415.3,ENST00000540306.1,ENST00000587044.1	chr17	41597497:41597635:41598118:41598247:41598736:41598933,	41598119	41598247	41598152	41598152	Frame_Shift_Del	A	-	p.K991fs
LIHC	TCGA-DD-A1EG-01	ETV4	ENST00000545089.1	chr17	41607489:41607549:41610041:41610307:41610554:41610627,41607539:41607549:41610041:41610307:41611226:41611350,	41610042	41610307	41610189	41610189	Frame_Shift_Del	G	-	p.Q223fs
LIHC	TCGA-DD-A1EG-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610615	41610615	Frame_Shift_Del	A	-	p.F162fs
LIHC	TCGA-DD-A1EG-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610664	41610664	Frame_Shift_Del	G	-	p.L146fs
LIHC	TCGA-DD-A1EG-01	NAGS	ENST00000592915.1,ENST00000293404.3	chr17	42084690:42084862:42084958:42085141:42085815:42086428,	42084959	42085141	42085006	42085006	Frame_Shift_Del	C	-	p.T439fs
LIHC	TCGA-DD-A1EG-01	NAGS	ENST00000589767.1	chr17	42084690:42084862:42084934:42085141:42085815:42086428,	42084935	42085141	42085006	42085006	Frame_Shift_Del	C	-	p.T439fs
LIHC	TCGA-DD-A1EG-01	NAGS	ENST00000592915.1,ENST00000293404.3	chr17	42084690:42084862:42084958:42085141:42085815:42086428,	42084959	42085141	42085023	42085023	Frame_Shift_Del	T	-	p.F445fs
LIHC	TCGA-DD-A1EG-01	NAGS	ENST00000589767.1	chr17	42084690:42084862:42084934:42085141:42085815:42086428,	42084935	42085141	42085023	42085023	Frame_Shift_Del	T	-	p.F445fs
LIHC	TCGA-DD-A1EG-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000592385.1,ENST00000593013.1,ENST00000588419.1,ENST00000225983.6	chr17	42160912:42161020:42161172:42161222:42161922:42162043,	42161173	42161222	42161180	42161180	Frame_Shift_Del	C	-	p.G784fs
LIHC	TCGA-DD-A1EG-01	UBTF	ENST00000527034.1,ENST00000533177.1,ENST00000526094.1,ENST00000393606.3,ENST00000343638.5	chr17	42289240:42289374:42290186:42290307:42290585:42290650,	42290187	42290307	42290240	42290240	Frame_Shift_Del	G	-	p.Q204fs
LIHC	TCGA-DD-A1EG-01	HIGD1B	ENST00000586911.1	chr17	42925578:42925620:42926473:42926756:42927699:42927844,	42926474	42926756	42926712	42926712	Frame_Shift_Del	C	-	p.T64fs
LIHC	TCGA-DD-A1EG-01	HIGD1B	ENST00000591513.1,ENST00000253410.2	chr17	42925578:42925620:42926621:42926756:42927699:42927844,	42926622	42926756	42926712	42926712	Frame_Shift_Del	C	-	p.T64fs
LIHC	TCGA-DD-A1EG-01	EFTUD2	ENST00000589769.1,ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000590367.1,ENST00000590977.1,ENST00000426333.2,ENST00000586276.1	chr17	42928624:42928737:42929077:42929185:42929776:42929930,	42929078	42929185	42929092	42929092	Frame_Shift_Del	T	-	p.T937fs
LIHC	TCGA-DD-A1EG-01	GFAP	ENST00000376990.4,ENST00000588957.1,ENST00000435360.2,ENST00000586793.1,ENST00000253408.5	chr17	42989064:42989165:42990636:42990798:42991095:42991191,	42990637	42990798	42990684	42990684	Frame_Shift_Del	T	-	p.M245fs
LIHC	TCGA-DD-A1EG-01	GFAP	ENST00000376990.4,ENST00000588957.1,ENST00000435360.2,ENST00000586793.1,ENST00000253408.5	chr17	42989064:42989165:42990636:42990798:42991095:42991191,	42990637	42990798	42990709	42990709	Frame_Shift_Del	T	-	p.K236fs
LIHC	TCGA-DD-A1EG-01	DCAKD	ENST00000588499.1,ENST00000342350.5,ENST00000452796.2,ENST00000593094.1	chr17	43101869:43102092:43107459:43107547:43111554:43111758,	43107460	43107547	43107518	43107518	Frame_Shift_Del	G	-	p.L117fs
LIHC	TCGA-DD-A1EG-01	NMT1	ENST00000590114.1,ENST00000592782.1,ENST00000258960.2,ENST00000543908.1	chr17	43138701:43138828:43159011:43159120:43163875:43163903,	43159012	43159120	43159062	43159062	Frame_Shift_Del	A	-	p.Q61fs
LIHC	TCGA-DD-A1EG-01	NMT1	ENST00000592782.1,ENST00000258960.2	chr17	43181076:43181244:43182226:43182364:43182986:43183354,	43182227	43182364	43182230	43182230	Frame_Shift_Del	G	-	p.G446fs
LIHC	TCGA-DD-A1EG-01	KANSL1	ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1	chr17	44116024:44116052:44116392:44116581:44117067:44117250,	44116393	44116581	44116519	44116519	Frame_Shift_Del	C	-	p.A756fs
LIHC	TCGA-DD-A1EG-01	KANSL1	ENST00000393476.3,ENST00000575318.1	chr17	44116024:44116052:44117067:44117250:44127898:44128070,	44117068	44117250	44117084	44117084	Frame_Shift_Del	G	-	p.S729fs
LIHC	TCGA-DD-A1EG-01	EFCAB13	ENST00000331493.2,ENST00000523842.1,ENST00000517484.1,ENST00000520776.1,ENST00000522326.1	chr17	45456547:45456619:45468802:45468946:45471390:45471465,	45468803	45468946	45468832	45468832	Frame_Shift_Del	A	-	p.K538fs
LIHC	TCGA-DD-A1EG-01	NPEPPS	ENST00000528751.1,ENST00000526247.2,ENST00000532729.1,ENST00000530173.1	chr17	45600342:45600429:45608755:45608921:45623274:45623359,	45608756	45608921	45608877	45608877	Frame_Shift_Del	T	-	p.L72fs
LIHC	TCGA-DD-A1EG-01	NFE2L1	ENST00000585291.1,ENST00000357480.5	chr17	46128478:46128990:46133747:46133960:46134705:46134860,	46133748	46133960	46133809	46133809	Frame_Shift_Del	T	-	p.V191fs
LIHC	TCGA-DD-A1EG-01	TTLL6	ENST00000490027.1,ENST00000433608.2,ENST00000393382.3	chr17	46846350:46846616:46847089:46847459:46862284:46862563,	46847090	46847459	46847291	46847291	Frame_Shift_Del	G	-	p.Q737fs
LIHC	TCGA-DD-A1EG-01	TTLL6	ENST00000376681.3,ENST00000393382.3,ENST00000509809.1	chr17	46874491:46874566:46876965:46877122:46877433:46877640,46874491:46874566:46876965:46877122:46878616:46878744,	46876966	46877122	46876998	46876998	Frame_Shift_Del	C	-	p.E246fs
LIHC	TCGA-DD-A1EG-01	SNF8	ENST00000514929.1,ENST00000515174.1,ENST00000502492.1,ENST00000290330.3,ENST00000510558.2,ENST00000510195.1,ENST00000512243.1	chr17	47014381:47014486:47018285:47018424:47021286:47021337,	47018286	47018424	47018353	47018353	Frame_Shift_Del	C	-	p.R59fs
LIHC	TCGA-DD-A1EG-01	IGF2BP1	ENST00000290341.3	chr17	47109271:47109335:47115529:47115811:47117318:47117453,	47115530	47115811	47115716	47115716	Frame_Shift_Del	C	-	p.I196fs
LIHC	TCGA-DD-A1EG-01	ABI3	ENST00000225941.1,ENST00000419580.2	chr17	47295100:47295277:47296901:47296987:47297219:47297315,	47296902	47296987	47296925	47296925	Frame_Shift_Del	A	-	p.R162fs
LIHC	TCGA-DD-A1EG-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394260	47394260	Frame_Shift_Del	T	-	p.K276fs
LIHC	TCGA-DD-A1EG-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394555	47394555	Frame_Shift_Del	T	-	p.K178fs
LIHC	TCGA-DD-A1EG-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394748	47394748	Frame_Shift_Del	T	-	p.R114fs
LIHC	TCGA-DD-A1EG-01	TAC4	ENST00000398154.1	chr17	47915670:47916035:47917211:47917271:47918913:47918942,47915670:47916035:47917211:47917271:47921425:47921519,	47917212	47917271	47917232	47917232	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-DD-A1EG-01	ITGA3	ENST00000544892.1,ENST00000506401.2,ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48148674:48148882:48149349:48149546:48151279:48151368,	48149350	48149546	48149479	48149479	Frame_Shift_Del	C	-	p.G363fs
LIHC	TCGA-DD-A1EG-01	SGCA	ENST00000513821.1	chr17	48245882:48245933:48246452:48246615:48247503:48247549,48245882:48245933:48246452:48246615:48248000:48248027,	48246453	48246615	48246580	48246580	Frame_Shift_Del	C	-	p.P238fs
LIHC	TCGA-DD-A1EG-01	COL1A1	ENST00000225964.5	chr17	48266528:48266636:48266737:48266899:48267039:48267093,	48266738	48266899	48266742	48266742	Frame_Shift_Del	G	-	p.P942fs
LIHC	TCGA-DD-A1EG-01	ABCC3	ENST00000427699.1,ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48738283:48738475:48741041:48741219:48741310:48741472,	48741042	48741219	48741074	48741074	Frame_Shift_Del	C	-	p.A344fs
LIHC	TCGA-DD-A1EG-01	SPAG9	ENST00000505279.1,ENST00000357122.4,ENST00000262013.7	chr17	49048067:49048217:49052131:49052308:49054468:49054582,	49052132	49052308	49052208	49052208	Frame_Shift_Del	G	-	p.P1208fs
LIHC	TCGA-DD-A1EG-01	SPAG9	ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1,ENST00000511312.2	chr17	49054468:49054582:49057106:49057278:49059884:49060033,	49057107	49057278	49057218	49057218	Frame_Shift_Del	C	-	p.D1100fs
LIHC	TCGA-DD-A1EG-01	SPAG9	ENST00000514613.1,ENST00000505173.1,ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1	chr17	49072804:49072894:49073925:49074055:49075804:49075978,	49073926	49074055	49073956	49073956	Frame_Shift_Del	A	-	p.F646fs
LIHC	TCGA-DD-A1EG-01	MBTD1	ENST00000376381.2,ENST00000591270.1	chr17	49270142:49270377:49270788:49270871:49272574:49272722,49270142:49270377:49270788:49270871:49278952:49279057,	49270789	49270871	49270801	49270801	Frame_Shift_Del	T	-	p.K481fs
LIHC	TCGA-DD-A1EG-01	MBTD1	ENST00000415868.1,ENST00000405860.3,ENST00000586178.1	chr17	49270788:49270871:49272574:49272722:49278952:49279057,	49272575	49272722	49272639	49272639	Frame_Shift_Del	G	-	p.T436fs
LIHC	TCGA-DD-A1EG-01	UTP18	ENST00000225298.7	chr17	49362628:49362729:49365389:49365564:49371263:49371406,	49365390	49365564	49365444	49365444	Frame_Shift_Del	A	-	p.T461fs
LIHC	TCGA-DD-A1EG-01	MMD	ENST00000262065.3	chr17	53469973:53471895:53478829:53478899:53481127:53481229,	53478830	53478899	53478844	53478844	Frame_Shift_Del	C	-	p.V169fs
LIHC	TCGA-DD-A1EG-01	ANKFN1	ENST00000566473.2,ENST00000318698.2	chr17	54535223:54535340:54543716:54543932:54554848:54555015,	54543717	54543932	54543825	54543825	Frame_Shift_Del	T	-	p.F560fs
LIHC	TCGA-DD-A1EG-01	DGKE	ENST00000284061.3,ENST00000572944.1,ENST00000576869.1	chr17	54912326:54912620:54921379:54921539:54923050:54923170,	54921380	54921539	54921519	54921519	Frame_Shift_Del	A	-	p.K203fs
LIHC	TCGA-DD-A1EG-01	AKAP1	ENST00000571629.1,ENST00000539273.1,ENST00000481416.1,ENST00000573326.1,ENST00000572557.1,ENST00000337714.3	chr17	55189165:55189285:55189851:55189979:55191819:55191997,	55189852	55189979	55189932	55189932	Frame_Shift_Del	C	-	p.P687fs
LIHC	TCGA-DD-A1EG-01	MPO	ENST00000225275.3,ENST00000340482.3	chr17	56349015:56349253:56350108:56350279:56350774:56350853,	56350109	56350279	56350240	56350240	Frame_Shift_Del	G	-	p.P586fs
LIHC	TCGA-DD-A1EG-01	RAD51C	ENST00000475762.1	chr17	56798106:56798173:56801400:56801461:56809841:56809905,56798106:56798173:56801400:56801461:56809844:56809880,56787219:56787351:56801400:56801461:56809844:56809880,	56801401	56801461	56801446	56801446	Frame_Shift_Del	G	-	p.W317fs
LIHC	TCGA-DD-A1EG-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57089688:57089807:57092970:57093160:57094656:57094785,	57092971	57093160	57092993	57092993	Frame_Shift_Del	T	-	p.R731fs
LIHC	TCGA-DD-A1EG-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57125043:57125180:57126538:57126754:57128574:57128689,	57126539	57126754	57126682	57126682	Frame_Shift_Del	G	-	p.Q341fs
LIHC	TCGA-DD-A1EG-01	SKA2	ENST00000578519.1	chr17	57189622:57189706:57196679:57196856:57208641:57208687,57189622:57189706:57196679:57196856:57232491:57232535,57189622:57189706:57196679:57196856:57201667:57201789,	57196680	57196856	57196726	57196726	Frame_Shift_Del	T	-	p.K84fs
LIHC	TCGA-DD-A1EG-01	SKA2	ENST00000583380.1	chr17	57189622:57189706:57196659:57196856:57208641:57208687,	57196660	57196856	57196726	57196726	Frame_Shift_Del	T	-	p.K84fs
LIHC	TCGA-DD-A1EG-01	PRR11	ENST00000578777.1,ENST00000578542.1,ENST00000580177.1,ENST00000262293.4	chr17	57262414:57262565:57262800:57262923:57270852:57271047,	57262801	57262923	57262866	57262866	Frame_Shift_Del	A	-	p.V115fs
LIHC	TCGA-DD-A1EG-01	GDPD1	ENST00000581140.1,ENST00000581276.1,ENST00000284116.4	chr17	57326100:57326146:57335111:57335201:57344401:57344535,57334482:57334601:57335111:57335201:57344401:57344535,	57335112	57335201	57335158	57335158	Frame_Shift_Del	G	-	p.W178fs
LIHC	TCGA-DD-A1EG-01	GDPD1	ENST00000579076.1,ENST00000581140.1,ENST00000578026.1,ENST00000581276.1,ENST00000284116.4	chr17	57344404:57344535:57348296:57348356:57350145:57350166,	57348297	57348356	57348329	57348329	Frame_Shift_Del	A	-	p.Q248fs
LIHC	TCGA-DD-A1EG-01	CLTC	ENST00000269122.3,ENST00000393043.1	chr17	57721642:57721844:57724758:57725027:57725600:57725762,	57724759	57725027	57724862	57724862	Frame_Shift_Del	G	-	p.T118fs
LIHC	TCGA-DD-A1EG-01	VMP1	ENST00000539763.1,ENST00000262291.4,ENST00000592619.1,ENST00000591877.1,ENST00000537567.1,ENST00000536180.1,ENST00000545362.1	chr17	57886156:57886237:57889030:57889147:57895072:57895134,	57889031	57889147	57889076	57889076	Frame_Shift_Del	T	-	p.F281fs
LIHC	TCGA-DD-A1EG-01	TUBD1	ENST00000539018.1,ENST00000394239.3,ENST00000325752.3,ENST00000592426.1	chr17	57943969:57944110:57951899:57952064:57955463:57955637,	57951900	57952064	57951964	57951964	Frame_Shift_Del	A	-	p.F290fs
LIHC	TCGA-DD-A1EG-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57955661:57955695:57958254:57958471:57962021:57962117,57955661:57955695:57958254:57958471:57963443:57963591,	57958255	57958471	57958394	57958394	Frame_Shift_Del	A	-	p.F133fs
LIHC	TCGA-DD-A1EG-01	CA4	ENST00000300900.4	chr17	58234787:58234933:58235050:58235149:58235421:58235488,	58235051	58235149	58235077	58235077	Frame_Shift_Del	G	-	p.K147fs
LIHC	TCGA-DD-A1EG-01	USP32	ENST00000592339.1,ENST00000300896.4	chr17	58256471:58256789:58257905:58257998:58258684:58259034,	58257906	58257998	58257949	58257949	Frame_Shift_Del	T	-	p.N1533fs
LIHC	TCGA-DD-A1EG-01	USP32	ENST00000592339.1,ENST00000300896.4	chr17	58256471:58256789:58257905:58257998:58258684:58259034,	58257906	58257998	58257973	58257973	Frame_Shift_Del	C	-	p.G1525fs
LIHC	TCGA-DD-A1EG-01	USP32	ENST00000590133.1,ENST00000592339.1,ENST00000300896.4	chr17	58286777:58286904:58288373:58288479:58288736:58288875,	58288374	58288479	58288443	58288443	Frame_Shift_Del	T	-	p.K785fs
LIHC	TCGA-DD-A1EG-01	APPBP2	ENST00000585368.1,ENST00000590244.1	chr17	58571834:58571978:58577759:58577848:58603154:58603299,	58577760	58577848	58577789	58577789	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-DD-A1EG-01	APPBP2	ENST00000585368.1,ENST00000590244.1	chr17	58571834:58571978:58577759:58577848:58603154:58603299,	58577760	58577848	58577806	58577806	Frame_Shift_Del	A	-	p.C61fs
LIHC	TCGA-DD-A1EG-01	BCAS3	ENST00000407086.3,ENST00000586041.1,ENST00000585744.1,ENST00000588462.1,ENST00000408905.3,ENST00000390652.5,ENST00000586484.1,ENST00000589222.1,ENST00000586705.1,ENST00000590128.1,ENST00000588874.1	chr17	58967121:58967132:58979980:58980064:58987892:58988063,	58979981	58980064	58980062	58980062	Frame_Shift_Del	A	-	p.K274fs
LIHC	TCGA-DD-A1EG-01	BCAS3	ENST00000585744.1,ENST00000588462.1,ENST00000390652.5	chr17	59093111:59093262:59104226:59104271:59112026:59112151,	59104227	59104271	59104251	59104251	Frame_Shift_Del	T	-	p.C554fs
LIHC	TCGA-DD-A1EG-01	BCAS3	ENST00000585744.1,ENST00000588462.1,ENST00000390652.5	chr17	59093111:59093262:59104226:59104271:59112026:59112151,	59104227	59104271	59104265	59104265	Frame_Shift_Del	C	-	p.A559fs
LIHC	TCGA-DD-A1EG-01	TBX4	ENST00000589003.1,ENST00000393853.4,ENST00000240335.1	chr17	59534897:59534992:59543179:59543299:59544870:59545018,	59543180	59543299	59543222	59543222	Frame_Shift_Del	C	-	p.N108fs
LIHC	TCGA-DD-A1EG-01	BRIP1	ENST00000577598.1,ENST00000259008.2,ENST00000579028.1	chr17	59853761:59853923:59857621:59857762:59858200:59858366,	59857622	59857762	59857699	59857699	Frame_Shift_Del	T	-	p.M620fs
LIHC	TCGA-DD-A1EG-01	MED13	ENST00000397786.2	chr17	60032742:60032928:60033040:60033199:60033699:60033842,	60033041	60033199	60033168	60033168	Frame_Shift_Del	C	-	p.L1885fs
LIHC	TCGA-DD-A1EG-01	MED13	ENST00000397786.2	chr17	60043822:60044012:60045395:60045619:60050087:60050249,	60045396	60045619	60045420	60045420	Frame_Shift_Del	A	-	p.F1389fs
LIHC	TCGA-DD-A1EG-01	MED13	ENST00000397786.2	chr17	60045395:60045619:60050087:60050249:60059558:60060475,	60050088	60050249	60050166	60050166	Frame_Shift_Del	T	-	p.R1297fs
LIHC	TCGA-DD-A1EG-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072555	60072555	Frame_Shift_Del	T	-	p.K713fs
LIHC	TCGA-DD-A1EG-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60087967	60087967	Frame_Shift_Del	T	-	p.K637fs
LIHC	TCGA-DD-A1EG-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60088541	60088541	Frame_Shift_Del	A	-	p.L446fs
LIHC	TCGA-DD-A1EG-01	MED13	ENST00000397786.2,ENST00000583958.1	chr17	60087910:60088594:60106901:60107012:60107211:60107361,	60106902	60107012	60106940	60106940	Frame_Shift_Del	A	-	p.F415fs
LIHC	TCGA-DD-A1EG-01	MRC2	ENST00000303375.5,ENST00000583597.1,ENST00000446119.2	chr17	60765649:60765764:60765861:60766025:60766212:60766321,	60765862	60766025	60765911	60765911	Frame_Shift_Del	C	-	p.G1037fs
LIHC	TCGA-DD-A1EG-01	MRC2	ENST00000446119.2	chr17	60765861:60766025:60766212:60766321:60767254:60767294,	60766213	60766321	60766314	60766314	Frame_Shift_Del	G	-	p.K1109fs
LIHC	TCGA-DD-A1EG-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61428610:61428777:61432143:61432751:61457078:61457187,	61432144	61432751	61432175	61432175	Frame_Shift_Del	T	-	p.I595fs
LIHC	TCGA-DD-A1EG-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61428610:61428777:61432143:61432751:61457078:61457187,	61432144	61432751	61432274	61432274	Frame_Shift_Del	T	-	p.I628fs
LIHC	TCGA-DD-A1EG-01	DCAF7	ENST00000585252.2	chr17	61627907:61628176:61656697:61656809:61657185:61657211,	61656698	61656809	61656737	61656737	Frame_Shift_Del	A	-	p.N114fs
LIHC	TCGA-DD-A1EG-01	CCDC47	ENST00000403162.3,ENST00000225726.5,ENST00000582331.2,ENST00000582252.1	chr17	61830139:61830159:61831792:61831878:61833599:61833710,	61831793	61831878	61831827	61831827	Frame_Shift_Del	A	-	p.S334fs
LIHC	TCGA-DD-A1EG-01	DDX42	ENST00000578681.1	chr17	61851566:61851736:61864393:61864630:61869771:61869864,61852467:61852538:61864393:61864630:61869771:61869864,	61864394	61864630	61864624	61864624	Frame_Shift_Del	A	-	p.E72fs
LIHC	TCGA-DD-A1EG-01	ICAM2	ENST00000449662.2,ENST00000578313.1,ENST00000579788.1,ENST00000579687.1,ENST00000412356.1,ENST00000578379.1,ENST00000418105.1,ENST00000583366.1,ENST00000584084.1	chr17	62081229:62081324:62082466:62082733:62083990:62084031,	62082467	62082733	62082497	62082497	Frame_Shift_Del	C	-	p.E100fs
LIHC	TCGA-DD-A1EG-01	ICAM2	ENST00000583684.1	chr17	62081229:62081324:62082466:62082497:62083990:62084095,	62082467	62082497	62082497	62082497	Frame_Shift_Del	C	-	p.E100fs
LIHC	TCGA-DD-A1EG-01	TEX2	ENST00000583501.1,ENST00000258991.3,ENST00000583097.1,ENST00000584379.1,ENST00000577489.1	chr17	62248459:62248559:62254684:62254831:62265527:62265775,	62254685	62254831	62254690	62254690	Frame_Shift_Del	T	-	p.I863fs
LIHC	TCGA-DD-A1EG-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62291267	62291267	Frame_Shift_Del	G	-	p.P104fs
LIHC	TCGA-DD-A1EG-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62291401	62291401	Frame_Shift_Del	C	-	p.G59fs
LIHC	TCGA-DD-A1EG-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000581230.1,ENST00000578804.1,ENST00000540698.2,ENST00000450599.2,ENST00000578491.1	chr17	62498279:62498341:62498556:62498667:62499043:62499214,	62498557	62498667	62498570	62498570	Frame_Shift_Del	T	-	p.M361fs
LIHC	TCGA-DD-A1EG-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000581230.1,ENST00000578804.1,ENST00000579461.1,ENST00000540698.2,ENST00000579996.1,ENST00000450599.2	chr17	62498556:62498667:62499043:62499216:62499305:62499364,	62499044	62499216	62499109	62499109	Frame_Shift_Del	T	-	p.E306fs
LIHC	TCGA-DD-A1EG-01	SMURF2	ENST00000582081.1,ENST00000585301.1,ENST00000578386.1,ENST00000262435.9	chr17	62559000:62559084:62567915:62568074:62574609:62574694,	62567916	62568074	62567988	62567988	Frame_Shift_Del	A	-	p.F315fs
LIHC	TCGA-DD-A1EG-01	LRRC37A3	ENST00000584306.1	chr17	62888646:62888718:62890766:62893772:62894479:62894577,	62890767	62893772	62892975	62892975	Frame_Shift_Del	T	-	p.K134fs
LIHC	TCGA-DD-A1EG-01	LRRC37A3	ENST00000584306.1	chr17	62888646:62888718:62890766:62893772:62894479:62894577,	62890767	62893772	62893342	62893342	Frame_Shift_Del	C	-	p.V12fs
LIHC	TCGA-DD-A1EG-01	CEP112	ENST00000535342.2,ENST00000392769.2,ENST00000537949.1	chr17	63746787:63746842:63847921:63848152:63898269:63898452,	63847922	63848152	63847959	63847959	Frame_Shift_Del	T	-	p.K786fs
LIHC	TCGA-DD-A1EG-01	CEP112	ENST00000535342.2,ENST00000583358.1,ENST00000392769.2	chr17	64066032:64066119:64125863:64125941:64128787:64128881,64092702:64092750:64125863:64125941:64128787:64128881,	64125864	64125941	64125924	64125924	Frame_Shift_Del	T	-	p.K194fs
LIHC	TCGA-DD-A1EG-01	APOH	ENST00000577982.1,ENST00000205948.6,ENST00000581797.1	chr17	64219815:64219892:64222145:64222242:64224137:64224278,	64222146	64222242	64222205	64222205	Frame_Shift_Del	T	-	p.G93fs
LIHC	TCGA-DD-A1EG-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584008.1	chr17	65338301:65338379:65340721:65340896:65341860:65341973,	65340722	65340896	65340878	65340878	Frame_Shift_Del	A	-	p.F309fs
LIHC	TCGA-DD-A1EG-01	NOL11	ENST00000581966.1,ENST00000581375.1,ENST00000535137.1	chr17	65714060:65714204:65715789:65715903:65716021:65716078,	65715790	65715903	65715865	65715865	Frame_Shift_Del	T	-	p.F73fs
LIHC	TCGA-DD-A1EG-01	NOL11	ENST00000253247.4,ENST00000581375.1,ENST00000581106.1,ENST00000584942.1,ENST00000535137.1	chr17	65715789:65715903:65716021:65716078:65717493:65717556,	65716022	65716078	65716067	65716067	Frame_Shift_Del	T	-	p.F101fs
LIHC	TCGA-DD-A1EG-01	NOL11	ENST00000253247.4,ENST00000577687.1,ENST00000580833.1,ENST00000581375.1,ENST00000535137.1	chr17	65732781:65732870:65733186:65733261:65733623:65733733,	65733187	65733261	65733213	65733213	Frame_Shift_Del	T	-	p.S390fs
LIHC	TCGA-DD-A1EG-01	BPTF	ENST00000335221.5,ENST00000424123.3,ENST00000321892.4	chr17	65871035:65871136:65882243:65882432:65887959:65888078,65871671:65871860:65882243:65882432:65887959:65888078,	65882244	65882432	65882334	65882334	Frame_Shift_Del	A	-	p.E715fs
LIHC	TCGA-DD-A1EG-01	C17orf58	ENST00000334461.7	chr17	65987245:65988219:65989016:65989351:65989539:65989640,	65989017	65989351	65989046	65989046	Frame_Shift_Del	T	-	p.T73fs
LIHC	TCGA-DD-A1EG-01	ARSG	ENST00000448504.2,ENST00000452479.2,ENST00000582154.1	chr17	66381204:66381313:66391213:66391334:66397500:66397591,	66391214	66391334	66391243	66391243	Frame_Shift_Del	C	-	p.A374fs
LIHC	TCGA-DD-A1EG-01	ARSG	ENST00000448504.2,ENST00000452479.2,ENST00000582154.1	chr17	66391213:66391334:66397500:66397591:66416329:66416666,	66397501	66397591	66397512	66397512	Frame_Shift_Del	C	-	p.H408fs
LIHC	TCGA-DD-A1EG-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	66985167:66985259:66985953:66986071:66986977:66987098,	66985954	66986071	66985990	66985990	Frame_Shift_Del	T	-	p.I1307fs
LIHC	TCGA-DD-A1EG-01	ABCA10	ENST00000519732.1	chr17	67161104:67161224:67170421:67170535:67170747:67170918,67161104:67161224:67170421:67170535:67171546:67171654,	67170422	67170535	67170425	67170425	Frame_Shift_Del	A	-	p.F1053fs
LIHC	TCGA-DD-A1EG-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000432313.2,ENST00000523419.1,ENST00000522406.1	chr17	67193204:67193263:67197640:67197809:67210844:67210992,	67197641	67197809	67197759	67197759	Frame_Shift_Del	A	-	p.W353fs
LIHC	TCGA-DD-A1EG-01	ABCA5	ENST00000392676.3,ENST00000586811.1,ENST00000392677.2,ENST00000591234.1,ENST00000586995.1,ENST00000588877.1	chr17	67251683:67251775:67251873:67251991:67252297:67252424,	67251874	67251991	67251935	67251935	Frame_Shift_Del	A	-	p.F1305fs
LIHC	TCGA-DD-A1EG-01	ABCA5	ENST00000392676.3,ENST00000586811.1,ENST00000392677.2,ENST00000591234.1,ENST00000586995.1,ENST00000588877.1	chr17	67251683:67251775:67251873:67251991:67252297:67252424,	67251874	67251991	67251959	67251959	Frame_Shift_Del	T	-	p.K1297fs
LIHC	TCGA-DD-A1EG-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71231990	71231990	Frame_Shift_Del	A	-	p.L123fs
LIHC	TCGA-DD-A1EG-01	SDK2	ENST00000479356.1,ENST00000388726.3,ENST00000392650.3,ENST00000424778.1,ENST00000410094.1	chr17	71354217:71354343:71357822:71357984:71361396:71361534,	71357823	71357984	71357907	71357907	Frame_Shift_Del	C	-	p.V1795fs
LIHC	TCGA-DD-A1EG-01	TMEM104	ENST00000335464.5,ENST00000582330.1,ENST00000582773.1,ENST00000417024.2	chr17	72791150:72791250:72791662:72791771:72815888:72815982,	72791663	72791771	72791736	72791736	Frame_Shift_Del	C	-	p.P201fs
LIHC	TCGA-DD-A1EG-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73094132:73094276:73096101:73096911:73100064:73100275,	73096102	73096911	73096656	73096656	Frame_Shift_Del	T	-	p.F300fs
LIHC	TCGA-DD-A1EG-01	NUP85	ENST00000583548.1	chr17	73201814:73201889:73204631:73204715:73205917:73206080,	73204632	73204715	73204668	73204668	Frame_Shift_Del	G	-	p.W27fs
LIHC	TCGA-DD-A1EG-01	NUP85	ENST00000581104.1,ENST00000583948.1,ENST00000577208.1,ENST00000447371.2,ENST00000245544.4,ENST00000579298.1	chr17	73201814:73201889:73204621:73204715:73205917:73206080,	73204622	73204715	73204668	73204668	Frame_Shift_Del	G	-	p.W27fs
LIHC	TCGA-DD-A1EG-01	RECQL5	ENST00000580707.1,ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73625397:73625555:73625787:73625922:73626263:73626314,	73625788	73625922	73625827	73625827	Frame_Shift_Del	G	-	p.P636fs
LIHC	TCGA-DD-A1EG-01	RECQL5	ENST00000578201.1,ENST00000423245.2,ENST00000317905.5	chr17	73627571:73627748:73647265:73647345:73654377:73654440,	73647266	73647345	73647313	73647313	Frame_Shift_Del	G	-	p.A394fs
LIHC	TCGA-DD-A1EG-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73738662:73738842:73739793:73739942:73744921:73745126,	73739794	73739942	73739841	73739841	Frame_Shift_Del	G	-	p.G1004fs
LIHC	TCGA-DD-A1EG-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000584939.1,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73752509:73752698:73752784:73752940:73753023:73753083,	73752785	73752940	73752822	73752822	Frame_Shift_Del	C	-	p.G1645fs
LIHC	TCGA-DD-A1EG-01	UNC13D	ENST00000412096.2,ENST00000207549.4	chr17	73824154:73824167:73824867:73825064:73826108:73826228,	73824868	73825064	73825030	73825030	Frame_Shift_Del	C	-	p.A997fs
LIHC	TCGA-DD-A1EG-01	ZACN	ENST00000334586.5,ENST00000425015.1,ENST00000421794.1	chr17	74077680:74077836:74077962:74078130:74078543:74078747,	74077963	74078130	74078085	74078085	Frame_Shift_Del	G	-	p.G335fs
LIHC	TCGA-DD-A1EG-01	RNF157	ENST00000591355.1	chr17	74143349:74143390:74148435:74148546:74150363:74150409,	74148436	74148546	74148527	74148527	Frame_Shift_Del	A	-	p.F610fs
LIHC	TCGA-DD-A1EG-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74287413	74287413	Frame_Shift_Del	T	-	p.N966fs
LIHC	TCGA-DD-A1EG-01	RHBDF2	ENST00000389760.4,ENST00000587640.1,ENST00000591885.1,ENST00000313080.4	chr17	74472911:74473106:74473261:74473380:74473738:74473813,	74473262	74473380	74473337	74473337	Frame_Shift_Del	G	-	p.P282fs
LIHC	TCGA-DD-A1EG-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189591	75189591	Frame_Shift_Del	A	-	p.E145fs
LIHC	TCGA-DD-A1EG-01	SEPT9	ENST00000329047.8,ENST00000590294.1	chr17	75303222:75303279:75398140:75398785:75478225:75478417,75369418:75369634:75398140:75398785:75478225:75478417,75277532:75277636:75398140:75398785:75478225:75478417,75316394:75316430:75398140:75398785:75478225:75478417,	75398141	75398785	75398666	75398666	Frame_Shift_Del	C	-	p.A183fs
LIHC	TCGA-DD-A1EG-01	SEPT9	ENST00000590059.1	chr17	75369418:75369634:75398637:75398785:75478225:75478417,	75398638	75398785	75398666	75398666	Frame_Shift_Del	C	-	p.A183fs
LIHC	TCGA-DD-A1EG-01	TMC6	ENST00000322914.3,ENST00000593044.1,ENST00000591436.1,ENST00000322933.4,ENST00000392467.3,ENST00000590602.1	chr17	76113548:76113725:76113882:76114016:76115051:76115127,	76113883	76114016	76113927	76113927	Frame_Shift_Del	G	-	p.P659fs
LIHC	TCGA-DD-A1EG-01	AFMID	ENST00000588199.1	chr17	76198801:76198832:76201520:76201599:76201683:76201819,76198801:76198832:76201520:76201599:76202026:76202131,	76201521	76201599	76201549	76201549	Frame_Shift_Del	C	-	p.D198fs
LIHC	TCGA-DD-A1EG-01	AFMID	ENST00000588199.1	chr17	76198801:76198832:76201520:76201599:76201683:76201819,76198801:76198832:76201520:76201599:76202026:76202131,	76201521	76201599	76201588	76201588	Frame_Shift_Del	C	-	p.L211fs
LIHC	TCGA-DD-A1EG-01	CYTH1	ENST00000361101.4,ENST00000446868.3,ENST00000589296.1,ENST00000591455.1	chr17	76704278:76704343:76705731:76705814:76778283:76778371,	76705732	76705814	76705752	76705752	Frame_Shift_Del	C	-	p.E29fs
LIHC	TCGA-DD-A1EG-01	LGALS3BP	ENST00000591274.1,ENST00000589527.1,ENST00000589775.2,ENST00000591778.1,ENST00000262776.3,ENST00000585407.1,ENST00000588198.1	chr17	76970879:76970901:76972046:76972238:76973221:76973296,	76972047	76972238	76972131	76972131	Frame_Shift_Del	C	-	p.D54fs
LIHC	TCGA-DD-A1EG-01	LGALS3BP	ENST00000591274.1,ENST00000589527.1,ENST00000589775.2,ENST00000591778.1,ENST00000262776.3,ENST00000585407.1,ENST00000588198.1	chr17	76970879:76970901:76972046:76972238:76973221:76973296,	76972047	76972238	76972202	76972202	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-DD-A1EG-01	ENGASE	ENST00000579016.1,ENST00000300682.10,ENST00000584568.1,ENST00000577783.2	chr17	77079167:77079205:77079563:77079672:77079842:77079935,	77079564	77079672	77079569	77079569	Frame_Shift_Del	G	-	p.W383fs
LIHC	TCGA-DD-A1EG-01	RBFOX3	ENST00000584778.1,ENST00000415831.1,ENST00000580155.1,ENST00000583458.1,ENST00000453134.2	chr17	77097665:77097726:77099243:77099336:77100154:77100208,	77099244	77099336	77099316	77099316	Frame_Shift_Del	A	-	p.F144fs
LIHC	TCGA-DD-A1EG-01	GAA	ENST00000572803.1,ENST00000302262.3,ENST00000390015.3	chr17	78085781:78085899:78086376:78086510:78086674:78086747,	78086377	78086510	78086418	78086418	Frame_Shift_Del	C	-	p.S599fs
LIHC	TCGA-DD-A1EG-01	CARD14	ENST00000570421.1,ENST00000573754.1,ENST00000344227.2,ENST00000573882.1,ENST00000392434.2,ENST00000571450.1,ENST00000571861.1,ENST00000575500.1	chr17	78164640:78164698:78165121:78165271:78166301:78166418,	78165122	78165271	78165183	78165183	Frame_Shift_Del	C	-	p.S384fs
LIHC	TCGA-DD-A1EG-01	CARD14	ENST00000344227.2,ENST00000573882.1	chr17	78177620:78177684:78178025:78178140:78178833:78179004,	78178026	78178140	78178111	78178111	Frame_Shift_Del	G	-	p.R790fs
LIHC	TCGA-DD-A1EG-01	CARD14	ENST00000575500.1	chr17	78177620:78177684:78178025:78178150:78178833:78179004,	78178026	78178150	78178111	78178111	Frame_Shift_Del	G	-	p.R790fs
LIHC	TCGA-DD-A1EG-01	RNF213	ENST00000319921.4,ENST00000582970.1,ENST00000456466.1	chr17	78234668:78234701:78237372:78237577:78247039:78247203,	78237373	78237577	78237521	78237521	Frame_Shift_Del	C	-	p.T14fs
LIHC	TCGA-DD-A1EG-01	RNF213	ENST00000508628.2,ENST00000582970.1	chr17	78311632:78311797:78313000:78314156:78316931:78317125,	78313001	78314156	78313961	78313961	Frame_Shift_Del	G	-	p.G1932fs
LIHC	TCGA-DD-A1EG-01	RPTOR	ENST00000570891.1,ENST00000306801.3,ENST00000577161.1,ENST00000544334.2	chr17	78519465:78519591:78599490:78599593:78617527:78617610,	78599491	78599593	78599516	78599516	Frame_Shift_Del	T	-	p.V63fs
LIHC	TCGA-DD-A1EG-01	AATK	ENST00000374792.2,ENST00000417379.1,ENST00000326724.4	chr17	79096334:79096623:79096993:79097143:79098526:79098621,	79096994	79097143	79097029	79097029	Frame_Shift_Del	G	-	p.P359fs
LIHC	TCGA-DD-A1EG-01	SLC38A10	ENST00000546352.1	chr17	79234160:79234194:79244717:79244824:79249768:79249951,	79244718	79244824	79244802	79244802	Frame_Shift_Del	T	-	p.T349fs
LIHC	TCGA-DD-A1EG-01	SLC38A10	ENST00000288439.5,ENST00000542075.1,ENST00000374759.3	chr17	79246315:79246427:79249768:79249951:79250830:79250933,	79249769	79249951	79249854	79249854	Frame_Shift_Del	C	-	p.G276fs
LIHC	TCGA-DD-A1EG-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79803019:79803106:79803436:79803618:79803746:79803867,	79803437	79803618	79803564	79803564	Frame_Shift_Del	C	-	p.G411fs
LIHC	TCGA-DD-A1EG-01	PYCR1	ENST00000577756.1	chr17	79892321:79892365:79892528:79892621:79892801:79892858,79891231:79891252:79892528:79892621:79892801:79892858,	79892529	79892621	79892587	79892587	Frame_Shift_Del	C	-	p.G192fs
LIHC	TCGA-DD-A1EG-01	ASPSCR1	ENST00000344865.6,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000581484.1,ENST00000306739.4	chr17	79943382:79943483:79952696:79952754:79953867:79953941,	79952697	79952754	79952719	79952719	Frame_Shift_Del	G	-	p.G133fs
LIHC	TCGA-DD-A1EG-01	ASPSCR1	ENST00000344865.6,ENST00000582355.2,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000306739.4	chr17	79953867:79953941:79954295:79954722:79966912:79966915,	79954296	79954722	79954493	79954493	Frame_Shift_Del	G	-	p.R235fs
LIHC	TCGA-DD-A1EG-01	SECTM1	ENST00000581864.1,ENST00000269389.3	chr17	80279990:80280246:80280753:80280887:80282457:80282659,	80280754	80280887	80280812	80280812	Frame_Shift_Del	A	-	p.L160fs
LIHC	TCGA-DD-A1EG-01	RAB40B	ENST00000571995.1,ENST00000570676.1,ENST00000269347.6,ENST00000538809.2	chr17	80617455:80617533:80618862:80618923:80622371:80622432,	80618863	80618923	80618870	80618870	Frame_Shift_Del	C	-	p.G86fs
LIHC	TCGA-DD-A1EG-01	THOC1	ENST00000579232.1,ENST00000582313.1,ENST00000580038.1,ENST00000261600.6	chr18	259681:259730:260185:260304:264025:264092,	260186	260304	260205	260205	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A1EG-01	CLUL1	ENST00000338387.7,ENST00000400606.2,ENST00000540035.1,ENST00000579494.1	chr18	641471:641541:644909:645097:649897:650175,	644910	645097	645074	645074	Frame_Shift_Del	T	-	p.H483fs
LIHC	TCGA-DD-A1EG-01	CLUL1	ENST00000338387.7,ENST00000400606.2,ENST00000540035.1,ENST00000579494.1	chr18	641471:641541:644909:645097:649897:650175,	644910	645097	645090	645090	Frame_Shift_Del	A	-	p.K489fs
LIHC	TCGA-DD-A1EG-01	METTL4	ENST00000319888.6	chr18	2544193:2544285:2544651:2544758:2547353:2547528,2538451:2539144:2544651:2544758:2547353:2547528,	2544652	2544758	2544668	2544668	Frame_Shift_Del	T	-	p.T389fs
LIHC	TCGA-DD-A1EG-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000577880.1	chr18	2718312:2718432:2722516:2722661:2724896:2724993,	2722517	2722661	2722560	2722560	Frame_Shift_Del	T	-	p.P834fs
LIHC	TCGA-DD-A1EG-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000577880.1	chr18	2740700:2740819:2743758:2743926:2747519:2747645,	2743759	2743926	2743846	2743846	Frame_Shift_Del	T	-	p.F1241fs
LIHC	TCGA-DD-A1EG-01	EMILIN2	ENST00000254528.3,ENST00000583776.1,ENST00000308080.5	chr18	2908940:2908973:2909688:2909817:2913064:2913160,	2909689	2909817	2909754	2909754	Frame_Shift_Del	G	-	p.G922fs
LIHC	TCGA-DD-A1EG-01	LPIN2	ENST00000584294.1	chr18	2954513:2954597:2960646:2960847:3013084:3013313,	2960647	2960847	2960812	2960812	Frame_Shift_Del	C	-	p.G9fs
LIHC	TCGA-DD-A1EG-01	MYOM1	ENST00000581075.1,ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3086035:3086149:3089171:3089239:3089534:3089594,	3089172	3089239	3089178	3089178	Frame_Shift_Del	T	-	p.K1377fs
LIHC	TCGA-DD-A1EG-01	MYOM1	ENST00000356443.4,ENST00000400569.3	chr18	3126698:3126895:3129229:3129517:3131372:3131494,	3129230	3129517	3129251	3129251	Frame_Shift_Del	G	-	p.L925fs
LIHC	TCGA-DD-A1EG-01	EPB41L3	ENST00000341928.2,ENST00000342933.3	chr18	5410564:5410618:5415816:5416377:5419709:5419793,	5415817	5416377	5416131	5416131	Frame_Shift_Del	G	-	p.L585fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254355	9254355	Frame_Shift_Del	A	-	p.K341fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254930	9254930	Frame_Shift_Del	A	-	p.S532fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255286	9255286	Frame_Shift_Del	A	-	p.E651fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255348	9255348	Frame_Shift_Del	T	-	p.F672fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255362	9255362	Frame_Shift_Del	T	-	p.N676fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255369	9255369	Frame_Shift_Del	A	-	p.K679fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255445	9255445	Frame_Shift_Del	A	-	p.E704fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257009	9257009	Frame_Shift_Del	T	-	p.P1225fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9254208:9258929:9263787:9263886:9275521:9275665,	9263788	9263886	9263828	9263828	Frame_Shift_Del	T	-	p.L1879fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9275521:9275665:9279546:9279642:9280938:9283757,	9279547	9279642	9279572	9279572	Frame_Shift_Del	G	-	p.R1955fs
LIHC	TCGA-DD-A1EG-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9275521:9275665:9279546:9279642:9280938:9283757,	9279547	9279642	9279637	9279637	Frame_Shift_Del	T	-	p.L1977fs
LIHC	TCGA-DD-A1EG-01	TWSG1	ENST00000262120.5	chr18	9359969:9360069:9396277:9396544:9399343:9400815,	9396278	9396544	9396410	9396410	Frame_Shift_Del	T	-	p.V119fs
LIHC	TCGA-DD-A1EG-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9563375:9563548:9570154:9570681:9577061:9577189,	9570155	9570681	9570450	9570450	Frame_Shift_Del	T	-	p.K426fs
LIHC	TCGA-DD-A1EG-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9570154:9570681:9577061:9577189:9583114:9583273,	9577062	9577189	9577142	9577142	Frame_Shift_Del	A	-	p.F322fs
LIHC	TCGA-DD-A1EG-01	APCDD1	ENST00000582723.1	chr18	10454978:10455036:10471526:10472058:10485458:10485500,	10471527	10472058	10471822	10471822	Frame_Shift_Del	C	-	p.P180fs
LIHC	TCGA-DD-A1EG-01	NAPG	ENST00000580746.1,ENST00000582978.1,ENST00000322897.6	chr18	10526025:10526155:10530766:10530834:10532707:10532792,	10530767	10530834	10530785	10530785	Frame_Shift_Del	A	-	p.L25fs
LIHC	TCGA-DD-A1EG-01	NAPG	ENST00000582472.2,ENST00000582978.1,ENST00000322897.6	chr18	10530766:10530834:10532707:10532792:10533532:10533550,	10532708	10532792	10532745	10532745	Frame_Shift_Del	A	-	p.A54fs
LIHC	TCGA-DD-A1EG-01	PIEZO2	ENST00000538948.1,ENST00000285141.4,ENST00000503781.3,ENST00000580640.1,ENST00000582913.1,ENST00000302079.6	chr18	10696389:10696537:10697745:10697878:10698922:10699175,	10697746	10697878	10697810	10697810	Frame_Shift_Del	T	-	p.R2142fs
LIHC	TCGA-DD-A1EG-01	AFG3L2	ENST00000269143.3	chr18	12367274:12367381:12370847:12370925:12371590:12371690,	12370848	12370925	12370885	12370885	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-DD-A1EG-01	CEP76	ENST00000262127.2,ENST00000423709.2,ENST00000590143.1	chr18	12674534:12674752:12678107:12678441:12680660:12680827,	12678108	12678441	12678387	12678387	Frame_Shift_Del	T	-	p.K448fs
LIHC	TCGA-DD-A1EG-01	CEP76	ENST00000592660.1,ENST00000585751.1,ENST00000262127.2,ENST00000593250.1,ENST00000590143.1	chr18	12695252:12695350:12697221:12697407:12698977:12699122,	12697222	12697407	12697333	12697333	Frame_Shift_Del	T	-	p.T199fs
LIHC	TCGA-DD-A1EG-01	PTPN2	ENST00000309660.5,ENST00000591115.1,ENST00000592059.1,ENST00000353319.4,ENST00000327283.3,ENST00000592776.1	chr18	12830941:12831040:12836789:12836890:12859162:12859253,	12836790	12836890	12836871	12836871	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A1EG-01	SEH1L	ENST00000587761.1,ENST00000399892.2,ENST00000588251.1,ENST00000262124.11	chr18	12948137:12948231:12955461:12955608:12963158:12963370,12951853:12951904:12955461:12955608:12963158:12963370,	12955462	12955608	12955507	12955507	Frame_Shift_Del	T	-	p.F70fs
LIHC	TCGA-DD-A1EG-01	FAM210A	ENST00000592976.1,ENST00000402563.1	chr18	13666492:13666712:13681603:13682104:13726327:13726504,13671910:13671972:13681603:13682104:13687741:13687881,13671920:13671972:13681603:13682104:13726327:13726504,	13681604	13682104	13681777	13681777	Frame_Shift_Del	G	-	p.A100fs
LIHC	TCGA-DD-A1EG-01	ANKRD30B	ENST00000447268.2,ENST00000580206.1,ENST00000358984.4	chr18	14752837:14753011:14754897:14755004:14757813:14757951,	14754898	14755004	14754931	14754931	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-DD-A1EG-01	ANKRD30B	ENST00000320584.8,ENST00000358984.4	chr18	14848714:14848928:14850212:14850381:14851507:14852479,	14850213	14850381	14850295	14850295	Frame_Shift_Del	A	-	p.K1042fs
LIHC	TCGA-DD-A1EG-01	ANKRD30B	ENST00000320584.8,ENST00000358984.4	chr18	14848714:14848928:14850212:14850381:14851507:14852479,	14850213	14850381	14850372	14850372	Frame_Shift_Del	T	-	p.N1066fs
LIHC	TCGA-DD-A1EG-01	ROCK1	ENST00000399799.2	chr18	18533538:18533746:18534743:18535005:18535127:18535206,	18534744	18535005	18534827	18534827	Frame_Shift_Del	G	-	p.P1257fs
LIHC	TCGA-DD-A1EG-01	ROCK1	ENST00000399799.2,ENST00000583556.1	chr18	18550308:18550474:18559870:18559965:18562723:18562744,	18559871	18559965	18559877	18559877	Frame_Shift_Del	T	-	p.N883fs
LIHC	TCGA-DD-A1EG-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629179	18629179	Frame_Shift_Del	T	-	p.K96fs
LIHC	TCGA-DD-A1EG-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000584446.1,ENST00000580732.2,ENST00000578368.1,ENST00000400483.4,ENST00000431264.1	chr18	18975345:18975522:18981110:18981287:18983832:18983955,	18981111	18981287	18981113	18981113	Frame_Shift_Del	T	-	p.F179fs
LIHC	TCGA-DD-A1EG-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000578955.1,ENST00000580732.2,ENST00000400483.4	chr18	19057124:19057317:19065580:19065714:19069972:19070192,	19065581	19065714	19065645	19065645	Frame_Shift_Del	G	-	p.W874fs
LIHC	TCGA-DD-A1EG-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000580732.2,ENST00000400483.4	chr18	19098133:19098195:19100648:19100784:19102618:19102782,	19100649	19100784	19100709	19100709	Frame_Shift_Del	T	-	p.F1846fs
LIHC	TCGA-DD-A1EG-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19109263:19110451:19112433:19112621:19116002:19116146,	19112434	19112621	19112547	19112547	Frame_Shift_Del	T	-	p.K754fs
LIHC	TCGA-DD-A1EG-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19112433:19112621:19116002:19116146:19119880:19119970,	19116003	19116146	19116039	19116039	Frame_Shift_Del	T	-	p.K717fs
LIHC	TCGA-DD-A1EG-01	MIB1	ENST00000578646.1,ENST00000261537.6,ENST00000577749.1	chr18	19378044:19378189:19379801:19379935:19383867:19383975,	19379802	19379935	19379849	19379849	Frame_Shift_Del	G	-	p.G429fs
LIHC	TCGA-DD-A1EG-01	GATA6	ENST00000581694.1,ENST00000269216.3	chr18	19751068:19752240:19756915:19757082:19761413:19761539,	19756916	19757082	19757056	19757056	Frame_Shift_Del	C	-	p.P426fs
LIHC	TCGA-DD-A1EG-01	NPC1	ENST00000540608.1,ENST00000269228.5	chr18	21131590:21131691:21134721:21134948:21136206:21136577,	21134722	21134948	21134863	21134863	Frame_Shift_Del	G	-	p.P471fs
LIHC	TCGA-DD-A1EG-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21418744:21418842:21419748:21419893:21422358:21422454,	21419749	21419893	21419796	21419796	Frame_Shift_Del	T	-	p.I1080fs
LIHC	TCGA-DD-A1EG-01	LAMA3	ENST00000586751.1,ENST00000399516.3,ENST00000313654.9,ENST00000269217.6,ENST00000587184.1,ENST00000588770.1	chr18	21487513:21487630:21487719:21487899:21489116:21489259,	21487720	21487899	21487748	21487748	Frame_Shift_Del	A	-	p.A2288fs
LIHC	TCGA-DD-A1EG-01	LAMA3	ENST00000399516.3,ENST00000313654.9,ENST00000269217.6,ENST00000587184.1,ENST00000588770.1	chr18	21523849:21523935:21526107:21526248:21529728:21529888,	21526108	21526248	21526126	21526126	Frame_Shift_Del	G	-	p.G3077fs
LIHC	TCGA-DD-A1EG-01	LAMA3	ENST00000399516.3,ENST00000313654.9,ENST00000269217.6,ENST00000587184.1,ENST00000588770.1	chr18	21531647:21531741:21532953:21533073:21534466:21534612,	21532954	21533073	21533021	21533021	Frame_Shift_Del	C	-	p.I3268fs
LIHC	TCGA-DD-A1EG-01	TTC39C	ENST00000317571.3,ENST00000578150.1	chr18	21594876:21595002:21644103:21644152:21645975:21646104,	21644104	21644152	21644146	21644146	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A1EG-01	TTC39C	ENST00000304621.6,ENST00000579214.1,ENST00000317571.3,ENST00000540918.2	chr18	21694517:21694611:21698088:21698196:21703797:21703901,	21698089	21698196	21698147	21698147	Frame_Shift_Del	A	-	p.L72fs
LIHC	TCGA-DD-A1EG-01	OSBPL1A	ENST00000319481.3,ENST00000399443.3,ENST00000357041.4	chr18	21752339:21752447:21757976:21758159:21759701:21759799,	21757977	21758159	21758027	21758027	Frame_Shift_Del	C	-	p.G681fs
LIHC	TCGA-DD-A1EG-01	OSBPL1A	ENST00000319481.3,ENST00000399443.3,ENST00000357041.4	chr18	21752339:21752447:21757976:21758159:21759701:21759799,	21757977	21758159	21758036	21758036	Frame_Shift_Del	T	-	p.K678fs
LIHC	TCGA-DD-A1EG-01	IMPACT	ENST00000580706.1,ENST00000284202.4,ENST00000585067.1,ENST00000578221.1	chr18	22010285:22010348:22017918:22018004:22020459:22020582,	22017919	22018004	22017959	22017959	Frame_Shift_Del	A	-	p.K108fs
LIHC	TCGA-DD-A1EG-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805689	22805689	Frame_Shift_Del	A	-	p.F731fs
LIHC	TCGA-DD-A1EG-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806063	22806063	Frame_Shift_Del	G	-	p.L607fs
LIHC	TCGA-DD-A1EG-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807517	22807517	Frame_Shift_Del	A	-	p.F122fs
LIHC	TCGA-DD-A1EG-01	SS18	ENST00000539849.1,ENST00000269138.5	chr18	23632786:23632809:23637552:23637706:23667464:23667541,	23637553	23637706	23637648	23637648	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-DD-A1EG-01	DSC1	ENST00000257198.5,ENST00000257197.3	chr18	28712530:28712652:28713853:28714093:28714534:28714747,	28713854	28714093	28713893	28713893	Frame_Shift_Del	C	-	p.A693fs
LIHC	TCGA-DD-A1EG-01	DSC1	ENST00000257198.5,ENST00000257197.3	chr18	28712530:28712652:28713853:28714093:28714534:28714747,	28713854	28714093	28713913	28713913	Frame_Shift_Del	T	-	p.N686fs
LIHC	TCGA-DD-A1EG-01	TTR	ENST00000237014.3	chr18	29172858:29172989:29175082:29175218:29178530:29178565,	29175083	29175218	29175196	29175196	Frame_Shift_Del	C	-	p.S105fs
LIHC	TCGA-DD-A1EG-01	TRAPPC8	ENST00000578886.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29426713:29426780:29429528:29429702:29432408:29432467,	29429529	29429702	29429666	29429666	Frame_Shift_Del	A	-	p.Y1200fs
LIHC	TCGA-DD-A1EG-01	CCDC178	ENST00000583930.1,ENST00000406524.2,ENST00000383096.3,ENST00000402325.1,ENST00000579947.1,ENST00000300227.8,ENST00000403303.1	chr18	30847165:30847261:30873122:30873276:30903454:30903597,	30873123	30873276	30873125	30873125	Frame_Shift_Del	T	-	p.M392fs
LIHC	TCGA-DD-A1EG-01	ASXL3	ENST00000269197.5,ENST00000592288.1	chr18	31250636:31250754:31251710:31251830:31263368:31263532,	31251711	31251830	31251784	31251784	Frame_Shift_Del	A	-	p.G223fs
LIHC	TCGA-DD-A1EG-01	ASXL3	ENST00000269197.5,ENST00000592288.1	chr18	31250636:31250754:31251710:31251830:31263368:31263532,	31251711	31251830	31251805	31251805	Frame_Shift_Del	A	-	p.L230fs
LIHC	TCGA-DD-A1EG-01	NOL4	ENST00000538587.1,ENST00000586314.1,ENST00000261592.5,ENST00000535475.1,ENST00000535384.1,ENST00000590712.1	chr18	31432552:31432999:31463207:31463388:31523028:31523142,	31463208	31463388	31463282	31463282	Frame_Shift_Del	T	-	p.N550fs
LIHC	TCGA-DD-A1EG-01	NOL4	ENST00000538587.1,ENST00000586314.1,ENST00000261592.5,ENST00000269185.4,ENST00000535475.1,ENST00000589544.1,ENST00000590712.1	chr18	31538202:31538382:31599281:31599565:31673428:31673561,	31599282	31599565	31599349	31599349	Frame_Shift_Del	T	-	p.N330fs
LIHC	TCGA-DD-A1EG-01	NOL4	ENST00000538587.1,ENST00000586314.1,ENST00000261592.5,ENST00000269185.4,ENST00000535475.1,ENST00000589544.1,ENST00000590712.1	chr18	31538202:31538382:31599281:31599565:31673428:31673561,	31599282	31599565	31599407	31599407	Frame_Shift_Del	G	-	p.L311fs
LIHC	TCGA-DD-A1EG-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706229	33706229	Frame_Shift_Del	G	-	p.R248fs
LIHC	TCGA-DD-A1EG-01	MOCOS	ENST00000261326.5	chr18	33778652:33778719:33779645:33780287:33783075:33783152,	33779646	33780287	33779962	33779962	Frame_Shift_Del	T	-	p.F206fs
LIHC	TCGA-DD-A1EG-01	MOCOS	ENST00000261326.5	chr18	33778652:33778719:33779645:33780287:33783075:33783152,	33779646	33780287	33779979	33779979	Frame_Shift_Del	C	-	p.Y211fs
LIHC	TCGA-DD-A1EG-01	FHOD3	ENST00000587493.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34273171:34273386:34289057:34289354:34297794:34297934,	34289058	34289354	34289248	34289248	Frame_Shift_Del	G	-	p.E634fs
LIHC	TCGA-DD-A1EG-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298308	34298308	Frame_Shift_Del	G	-	p.R841fs
LIHC	TCGA-DD-A1EG-01	KIAA1328	ENST00000543923.1,ENST00000280020.5,ENST00000592611.1,ENST00000591619.1	chr18	34647302:34647508:34740162:34740344:34752935:34753044,	34740163	34740344	34740229	34740229	Frame_Shift_Del	C	-	p.D429fs
LIHC	TCGA-DD-A1EG-01	HAUS1	ENST00000588704.1,ENST00000282058.6,ENST00000593165.1,ENST00000591715.1,ENST00000592206.1	chr18	43698207:43698282:43699891:43700026:43702432:43702556,	43699892	43700026	43699898	43699898	Frame_Shift_Del	C	-	p.I116fs
LIHC	TCGA-DD-A1EG-01	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43795906	43795906	Frame_Shift_Del	A	-	p.P20fs
LIHC	TCGA-DD-A1EG-01	C18orf25	ENST00000321319.6	chr18	43753999:43754296:43795776:43796561:43833662:43833786,	43795777	43796561	43796476	43796476	Frame_Shift_Del	C	-	p.D210fs
LIHC	TCGA-DD-A1EG-01	PIAS2	ENST00000545673.1	chr18	44435527:44435578:44444126:44444211:44470542:44471017,44435527:44435578:44444126:44444211:44497284:44497308,	44444127	44444211	44444168	44444168	Frame_Shift_Del	A	-	p.F181fs
LIHC	TCGA-DD-A1EG-01	CTIF	ENST00000256413.3	chr18	46284289:46284776:46287760:46288060:46343591:46343747,	46287761	46288060	46288021	46288021	Frame_Shift_Del	G	-	p.E444fs
LIHC	TCGA-DD-A1EG-01	MYO5B	ENST00000285039.7	chr18	47379818:47380017:47383182:47383260:47389596:47389697,	47383183	47383260	47383243	47383243	Frame_Shift_Del	C	-	p.G1321fs
LIHC	TCGA-DD-A1EG-01	MYO5B	ENST00000285039.7	chr18	47479629:47479713:47480682:47480805:47488635:47488776,	47480683	47480805	47480697	47480697	Frame_Shift_Del	G	-	p.H552fs
LIHC	TCGA-DD-A1EG-01	MBD1	ENST00000591416.1,ENST00000339998.6,ENST00000424334.2,ENST00000398495.2,ENST00000269471.5,ENST00000349085.2,ENST00000457839.2,ENST00000590208.1,ENST00000398493.1,ENST00000585595.1,ENST00000347968.3,ENST00000398488.1,ENST00000269468.5,ENST00000436910.1,ENST00000588937.1,ENST00000587605.1,ENST00000586118.1,ENST00000589733.1,ENST00000382948.5,ENST00000591535.1	chr18	47802020:47802098:47802204:47802351:47802747:47802788,	47802205	47802351	47802292	47802292	Frame_Shift_Del	G	-	p.S192fs
LIHC	TCGA-DD-A1EG-01	MBD1	ENST00000590215.1	chr18	47803201:47803368:47803459:47803566:47806252:47806362,	47803460	47803566	47803463	47803463	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A1EG-01	MBD1	ENST00000591416.1,ENST00000339998.6,ENST00000424334.2,ENST00000398495.2,ENST00000269471.5,ENST00000349085.2,ENST00000457839.2,ENST00000590208.1,ENST00000398493.1,ENST00000585595.1,ENST00000353909.3,ENST00000347968.3,ENST00000585672.1,ENST00000398488.1,ENST00000269468.5,ENST00000436910.1,ENST00000588937.1,ENST00000587605.1,ENST00000586118.1,ENST00000382948.5,ENST00000591535.1	chr18	47803201:47803368:47803459:47803574:47806252:47806362,	47803460	47803574	47803463	47803463	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A1EG-01	CXXC1	ENST00000591190.1	chr18	47811101:47811209:47811371:47811617:47812118:47812298,	47811372	47811617	47811506	47811506	Frame_Shift_Del	C	-	p.A260fs
LIHC	TCGA-DD-A1EG-01	CXXC1	ENST00000412036.2,ENST00000285106.6,ENST00000589548.1,ENST00000586837.1,ENST00000589940.1	chr18	47812118:47812298:47812391:47812627:47812908:47813009,	47812392	47812627	47812544	47812544	Frame_Shift_Del	G	-	p.R103fs
LIHC	TCGA-DD-A1EG-01	SKA1	ENST00000398452.2,ENST00000285116.3,ENST00000417656.2	chr18	47902189:47902288:47906495:47906620:47908498:47908596,	47906496	47906620	47906598	47906598	Frame_Shift_Del	A	-	p.E64fs
LIHC	TCGA-DD-A1EG-01	MAPK4	ENST00000592595.1	chr18	48086511:48086613:48189458:48190874:48241448:48241593,	48189459	48190874	48190827	48190827	Frame_Shift_Del	G	-	p.G167fs
LIHC	TCGA-DD-A1EG-01	MAPK4	ENST00000592595.1	chr18	48086511:48086613:48189458:48190874:48241448:48241593,	48189459	48190874	48190836	48190836	Frame_Shift_Del	G	-	p.G170fs
LIHC	TCGA-DD-A1EG-01	MRO	ENST00000587291.1,ENST00000256425.2,ENST00000398439.3,ENST00000436348.2,ENST00000428869.2,ENST00000585524.1	chr18	48326416:48326513:48327718:48327874:48331523:48331706,	48327719	48327874	48327730	48327730	Frame_Shift_Del	G	-	p.Q192fs
LIHC	TCGA-DD-A1EG-01	ME2	ENST00000382927.3,ENST00000321341.5	chr18	48442537:48442613:48443716:48443878:48444479:48444583,	48443717	48443878	48443764	48443764	Frame_Shift_Del	G	-	p.L172fs
LIHC	TCGA-DD-A1EG-01	ME2	ENST00000585680.1	chr18	48458627:48458730:48466657:48466756:48473386:48473524,	48466658	48466756	48466697	48466697	Frame_Shift_Del	G	-	p.G510fs
LIHC	TCGA-DD-A1EG-01	POLI	ENST00000217800.5,ENST00000579434.1,ENST00000579534.1,ENST00000583136.1,ENST00000577971.1	chr18	51804141:51804225:51807036:51807273:51809206:51809281,	51807037	51807273	51807125	51807125	Frame_Shift_Del	G	-	p.L216fs
LIHC	TCGA-DD-A1EG-01	STARD6	ENST00000307844.3,ENST00000581310.1	chr18	51858111:51858229:51863494:51863621:51880423:51880473,	51863495	51863621	51863589	51863589	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-DD-A1EG-01	TCF4	ENST00000561992.1,ENST00000570177.2,ENST00000564228.1,ENST00000354452.3,ENST00000543082.1,ENST00000457482.3,ENST00000561831.3,ENST00000568673.1,ENST00000565018.2,ENST00000537856.3,ENST00000566279.1,ENST00000570287.2,ENST00000564999.1,ENST00000540999.1,ENST00000568740.1,ENST00000566286.1,ENST00000356073.4,ENST00000570146.1,ENST00000537578.1,ENST00000398339.1,ENST00000567880.1,ENST00000544241.2,ENST00000562680.1,ENST00000564403.2	chr18	52927179:52927258:52928696:52928764:52937061:52937194,	52928697	52928764	52928747	52928747	Frame_Shift_Del	C	-	p.A315fs
LIHC	TCGA-DD-A1EG-01	TXNL1	ENST00000217515.6,ENST00000587613.1,ENST00000590954.1,ENST00000586262.1	chr18	54285271:54285357:54291518:54291692:54293591:54293688,	54291519	54291692	54291581	54291581	Frame_Shift_Del	T	-	p.I103fs
LIHC	TCGA-DD-A1EG-01	TXNL1	ENST00000217515.6,ENST00000587613.1,ENST00000590954.1,ENST00000586262.1	chr18	54285271:54285357:54291518:54291692:54293591:54293688,	54291519	54291692	54291642	54291642	Frame_Shift_Del	A	-	p.F82fs
LIHC	TCGA-DD-A1EG-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55313660:55315944:55317598:55317729:55319265:55319404,	55317599	55317729	55317653	55317653	Frame_Shift_Del	G	-	p.P1159fs
LIHC	TCGA-DD-A1EG-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55361813:55361902:55362402:55362561:55362681:55362764,	55362403	55362561	55362485	55362485	Frame_Shift_Del	A	-	p.F286fs
LIHC	TCGA-DD-A1EG-01	ATP8B1	ENST00000536015.1	chr18	55371786:55371900:55373721:55373819:55398858:55399039,	55373722	55373819	55373795	55373795	Frame_Shift_Del	T	-	p.N69fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202092	56202092	Frame_Shift_Del	T	-	p.K1776fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202224	56202224	Frame_Shift_Del	A	-	p.L1732fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202653	56202653	Frame_Shift_Del	C	-	p.G1589fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204010	56204010	Frame_Shift_Del	C	-	p.V1137fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204249	56204249	Frame_Shift_Del	A	-	p.L1057fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246419	56246419	Frame_Shift_Del	C	-	p.G530fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246443	56246443	Frame_Shift_Del	C	-	p.G522fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246911	56246911	Frame_Shift_Del	A	-	p.F366fs
LIHC	TCGA-DD-A1EG-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L357fs
LIHC	TCGA-DD-A1EG-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56383166:56383199:56390279:56390483:56400628:56400806,	56390280	56390483	56390329	56390329	Frame_Shift_Del	C	-	p.H356fs
LIHC	TCGA-DD-A1EG-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56586774	56586774	Frame_Shift_Del	C	-	p.P420fs
LIHC	TCGA-DD-A1EG-01	ZNF532	ENST00000588956.1,ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000592249.1,ENST00000591230.1,ENST00000336078.4,ENST00000589131.1	chr18	56646286:56646399:56648701:56648849:56651203:56651326,	56648702	56648849	56648830	56648830	Frame_Shift_Del	A	-	p.E1131fs
LIHC	TCGA-DD-A1EG-01	SEC11C	ENST00000299714.3	chr18	56816744:56816854:56819767:56819844:56822919:56823039,	56819768	56819844	56819816	56819816	Frame_Shift_Del	A	-	p.T82fs
LIHC	TCGA-DD-A1EG-01	SEC11C	ENST00000509791.3,ENST00000587834.1,ENST00000588875.1	chr18	56816744:56816854:56819767:56819917:56822919:56823039,	56819768	56819917	56819816	56819816	Frame_Shift_Del	A	-	p.T82fs
LIHC	TCGA-DD-A1EG-01	CCBE1	ENST00000589116.1,ENST00000439986.4	chr18	57106908:57107048:57115214:57115335:57122082:57122183,	57115215	57115335	57115229	57115229	Frame_Shift_Del	C	-	p.G254fs
LIHC	TCGA-DD-A1EG-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60587191:60587347:60608950:60609151:60612341:60612504,	60608951	60609151	60609095	60609095	Frame_Shift_Del	C	-	p.H523fs
LIHC	TCGA-DD-A1EG-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60630600:60630705:60639746:60639941:60642629:60642858,	60639747	60639941	60639894	60639894	Frame_Shift_Del	A	-	p.T724fs
LIHC	TCGA-DD-A1EG-01	SERPINB5	ENST00000465652.1,ENST00000382771.4,ENST00000464346.1	chr18	61160185:61160328:61166352:61166520:61170562:61170608,	61166353	61166520	61166482	61166482	Frame_Shift_Del	C	-	p.P233fs
LIHC	TCGA-DD-A1EG-01	SERPINB7	ENST00000425392.1,ENST00000336429.2,ENST00000431370.1,ENST00000398019.2,ENST00000447428.1,ENST00000546027.1	chr18	61449588:61449774:61460394:61460511:61463499:61463546,61459626:61459677:61460394:61460511:61463499:61463546,	61460395	61460511	61460480	61460480	Frame_Shift_Del	T	-	p.L102fs
LIHC	TCGA-DD-A1EG-01	CDH19	ENST00000262150.2	chr18	64176231:64176483:64178804:64178922:64197081:64197203,	64178805	64178922	64178865	64178865	Frame_Shift_Del	A	-	p.Y506fs
LIHC	TCGA-DD-A1EG-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367668	66367668	Frame_Shift_Del	A	-	p.I123fs
LIHC	TCGA-DD-A1EG-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367677	66367677	Frame_Shift_Del	T	-	p.K119fs
LIHC	TCGA-DD-A1EG-01	CCDC102B	ENST00000360242.5,ENST00000358653.5	chr18	66465316:66465418:66503985:66504606:66505942:66506163,	66503986	66504606	66504585	66504585	Frame_Shift_Del	A	-	p.T195fs
LIHC	TCGA-DD-A1EG-01	RTTN	ENST00000255674.6,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67698111:67698217:67715206:67715424:67718646:67718784,	67715207	67715424	67715302	67715302	Frame_Shift_Del	T	-	p.T1816fs
LIHC	TCGA-DD-A1EG-01	RTTN	ENST00000255674.6,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67698111:67698217:67715206:67715424:67718646:67718784,	67715207	67715424	67715327	67715327	Frame_Shift_Del	T	-	p.K1807fs
LIHC	TCGA-DD-A1EG-01	RTTN	ENST00000437017.1,ENST00000255674.6	chr18	67806834:67806952:67807335:67807424:67809523:67809623,	67807336	67807424	67807397	67807397	Frame_Shift_Del	T	-	p.K870fs
LIHC	TCGA-DD-A1EG-01	FBXO15	ENST00000269500.5,ENST00000581214.1,ENST00000583443.1,ENST00000419743.2	chr18	71793209:71793336:71796639:71796849:71797650:71797893,	71796640	71796849	71796729	71796729	Frame_Shift_Del	T	-	p.K156fs
LIHC	TCGA-DD-A1EG-01	MBP	ENST00000581878.1,ENST00000579129.1,ENST00000397860.3,ENST00000580402.1,ENST00000397863.1,ENST00000355994.2,ENST00000490754.1	chr18	74729074:74729224:74778253:74778341:74817166:74817217,	74778254	74778341	74778307	74778307	Frame_Shift_Del	T	-	p.K29fs
LIHC	TCGA-DD-A1EG-01	ATP9B	ENST00000587878.1	chr18	76966976:76967012:77013380:77013541:77037053:77037196,	77013381	77013541	77013426	77013426	Frame_Shift_Del	T	-	p.F385fs
LIHC	TCGA-DD-A1EG-01	ATP9B	ENST00000590477.1,ENST00000426216.2,ENST00000307671.7,ENST00000543761.1,ENST00000589951.1	chr18	77119395:77119462:77132824:77132882:77133897:77134027,	77132825	77132882	77132843	77132843	Frame_Shift_Del	A	-	p.K1011fs
LIHC	TCGA-DD-A1EG-01	NFATC1	ENST00000542384.1,ENST00000587635.1,ENST00000329101.4,ENST00000427363.2,ENST00000592223.1,ENST00000586434.1,ENST00000545796.1,ENST00000253506.5,ENST00000591814.1,ENST00000318065.5,ENST00000590313.1,ENST00000397790.2	chr18	77193578:77193738:77208781:77208984:77210953:77211041,	77208782	77208984	77208925	77208925	Frame_Shift_Del	C	-	p.I510fs
LIHC	TCGA-DD-A1EG-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470370	77470370	Frame_Shift_Del	T	-	p.L266fs
LIHC	TCGA-DD-A1EG-01	THEG	ENST00000342640.4,ENST00000528213.1,ENST00000346878.2	chr19	371204:371322:372630:372700:373469:373531,	372631	372700	372648	372648	Frame_Shift_Del	T	-	p.E206fs
LIHC	TCGA-DD-A1EG-01	SHC2	ENST00000590170.1	chr19	418922:419056:422145:422379:430683:430747,	422146	422379	422360	422360	Frame_Shift_Del	G	-	p.P469fs
LIHC	TCGA-DD-A1EG-01	PALM	ENST00000338448.5,ENST00000264560.7,ENST00000589012.1,ENST00000592870.1	chr19	727563:727694:731094:731245:734172:734194,	731095	731245	731136	731136	Frame_Shift_Del	C	-	p.A104fs
LIHC	TCGA-DD-A1EG-01	PTBP1	ENST00000589575.1,ENST00000394601.4,ENST00000586944.1,ENST00000585535.1,ENST00000349038.4,ENST00000590887.1	chr19	797485:797505:799412:799443:808359:808452,797485:797505:799412:799443:807868:807902,797485:797505:799412:799443:803560:803632,	799413	799443	799419	799419	Frame_Shift_Del	C	-	p.V5fs
LIHC	TCGA-DD-A1EG-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3	chr19	1113533:1113703:1114229:1114421:1116019:1116102,	1114230	1114421	1114287	1114287	Frame_Shift_Del	G	-	p.L674fs
LIHC	TCGA-DD-A1EG-01	C19orf25	ENST00000427685.2	chr19	1475144:1475257:1478652:1478904:1479161:1479193,	1478653	1478904	1478746	1478746	Frame_Shift_Del	T	-	p.S53fs
LIHC	TCGA-DD-A1EG-01	C19orf25	ENST00000436106.2,ENST00000588871.1	chr19	1475144:1475257:1478772:1478904:1479161:1479193,	1478773	1478904	1478867	1478867	Frame_Shift_Del	G	-	p.P12fs
LIHC	TCGA-DD-A1EG-01	C19orf25	ENST00000427685.2	chr19	1475144:1475257:1478652:1478904:1479161:1479193,	1478653	1478904	1478867	1478867	Frame_Shift_Del	G	-	p.P12fs
LIHC	TCGA-DD-A1EG-01	PCSK4	ENST00000588195.1,ENST00000591303.1,ENST00000591201.1,ENST00000300954.5	chr19	1482437:1482474:1482894:1483019:1483282:1483435,	1482895	1483019	1482948	1482948	Frame_Shift_Del	G	-	p.P548fs
LIHC	TCGA-DD-A1EG-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918935	1918935	Frame_Shift_Del	C	-	p.A114fs
LIHC	TCGA-DD-A1EG-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918980	1918980	Frame_Shift_Del	G	-	p.W129fs
LIHC	TCGA-DD-A1EG-01	MKNK2	ENST00000589441.1	chr19	2037630:2037828:2039629:2039855:2040132:2040176,	2039630	2039855	2039662	2039662	Frame_Shift_Del	T	-	p.R450fs
LIHC	TCGA-DD-A1EG-01	DOT1L	ENST00000452696.1	chr19	2189730:2189794:2191082:2191239:2193687:2193782,	2191083	2191239	2191155	2191155	Frame_Shift_Del	G	-	p.G137fs
LIHC	TCGA-DD-A1EG-01	DOT1L	ENST00000398665.3	chr19	2189730:2189794:2191010:2191239:2193687:2193782,	2191011	2191239	2191155	2191155	Frame_Shift_Del	G	-	p.G137fs
LIHC	TCGA-DD-A1EG-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000591529.1,ENST00000587672.1,ENST00000589205.1,ENST00000426948.2,ENST00000443826.3	chr19	3011019:3011158:3013666:3013816:3014567:3014612,	3013667	3013816	3013778	3013778	Frame_Shift_Del	G	-	p.P254fs
LIHC	TCGA-DD-A1EG-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000591529.1,ENST00000587672.1,ENST00000589205.1,ENST00000426948.2,ENST00000443826.3	chr19	3011019:3011158:3013666:3013816:3014567:3014612,	3013667	3013816	3013796	3013796	Frame_Shift_Del	G	-	p.P248fs
LIHC	TCGA-DD-A1EG-01	TLE2	ENST00000592305.1,ENST00000592584.1,ENST00000455444.2,ENST00000262953.6,ENST00000590101.1,ENST00000590536.1,ENST00000591720.1,ENST00000586422.1,ENST00000591529.1,ENST00000426948.2,ENST00000443826.3	chr19	3015712:3015758:3025017:3025080:3027826:3027871,3019699:3019771:3025017:3025080:3027826:3027871,	3025018	3025080	3025033	3025033	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A1EG-01	GNA15	ENST00000586082.1,ENST00000262958.3	chr19	3150128:3150283:3151704:3151833:3155820:3155824,	3151705	3151833	3151781	3151781	Frame_Shift_Del	C	-	p.P188fs
LIHC	TCGA-DD-A1EG-01	FZR1	ENST00000588327.1	chr19	3506374:3506472:3522953:3523056:3525865:3525991,	3522954	3523056	3523036	3523036	Frame_Shift_Del	A	-	p.N17fs
LIHC	TCGA-DD-A1EG-01	CACTIN	ENST00000585942.1,ENST00000248420.5,ENST00000221899.3	chr19	3620704:3620800:3623685:3624160:3626593:3626813,	3623686	3624160	3623728	3623728	Frame_Shift_Del	G	-	p.P200fs
LIHC	TCGA-DD-A1EG-01	PIP5K1C	ENST00000589578.1,ENST00000539785.1,ENST00000537021.1,ENST00000335312.3	chr19	3643240:3643379:3644084:3644249:3645971:3646056,	3644085	3644249	3644182	3644182	Frame_Shift_Del	G	-	p.P471fs
LIHC	TCGA-DD-A1EG-01	PIP5K1C	ENST00000589578.1,ENST00000539785.1,ENST00000537021.1,ENST00000335312.3	chr19	3648622:3648706:3651823:3652029:3653287:3653587,	3651824	3652029	3651846	3651846	Frame_Shift_Del	C	-	p.E369fs
LIHC	TCGA-DD-A1EG-01	MAP2K2	ENST00000599345.1,ENST00000394867.4	chr19	4110506:4110653:4117416:4117627:4123780:4123812,	4117417	4117627	4117441	4117441	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A1EG-01	FSD1	ENST00000598179.1,ENST00000597590.1,ENST00000221856.6	chr19	4318380:4318502:4318868:4318948:4322982:4323143,	4318869	4318948	4318906	4318906	Frame_Shift_Del	G	-	p.G334fs
LIHC	TCGA-DD-A1EG-01	STAP2	ENST00000594605.1,ENST00000599736.1,ENST00000600324.1	chr19	4328671:4328806:4329957:4330058:4332018:4332071,	4329958	4330058	4330023	4330023	Frame_Shift_Del	C	-	p.G130fs
LIHC	TCGA-DD-A1EG-01	SH3GL1	ENST00000598230.1,ENST00000269886.3,ENST00000593591.1	chr19	4364084:4364218:4365478:4365622:4366497:4366567,	4365479	4365622	4365496	4365496	Frame_Shift_Del	C	-	p.G106fs
LIHC	TCGA-DD-A1EG-01	LONP1	ENST00000589473.1,ENST00000587552.1,ENST00000585374.1,ENST00000590729.1,ENST00000540670.2,ENST00000360614.3,ENST00000590558.1,ENST00000593119.1	chr19	5693308:5693473:5693562:5693780:5694397:5694557,	5693563	5693780	5693679	5693679	Frame_Shift_Del	C	-	p.E808fs
LIHC	TCGA-DD-A1EG-01	RANBP3	ENST00000340578.6,ENST00000592771.1,ENST00000592197.1,ENST00000034275.8,ENST00000591092.1,ENST00000541471.1,ENST00000439268.2,ENST00000587411.1,ENST00000586344.1	chr19	5921211:5921332:5923204:5923314:5923822:5923885,	5923205	5923314	5923250	5923250	Frame_Shift_Del	T	-	p.K388fs
LIHC	TCGA-DD-A1EG-01	RFX2	ENST00000586806.1	chr19	6016100:6016282:6026173:6026248:6039990:6040252,6016100:6016282:6026173:6026248:6110403:6110457,	6026174	6026248	6026218	6026218	Frame_Shift_Del	T	-	p.S185fs
LIHC	TCGA-DD-A1EG-01	GTF2F1	ENST00000595047.1,ENST00000394456.5	chr19	6383330:6383506:6387399:6387570:6389454:6389648,	6387400	6387570	6387565	6387565	Frame_Shift_Del	T	-	p.K111fs
LIHC	TCGA-DD-A1EG-01	KHSRP	ENST00000599395.1,ENST00000595112.1,ENST00000595548.1,ENST00000398148.3,ENST00000595258.1	chr19	6420432:6420482:6421288:6421328:6421660:6421699,	6421289	6421328	6421292	6421292	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A1EG-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7152736:7152938:7163042:7163210:7166164:7166415,	7163043	7163210	7163082	7163082	Frame_Shift_Del	C	-	p.E664fs
LIHC	TCGA-DD-A1EG-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7172300:7172445:7174593:7174742:7184326:7184648,	7174594	7174742	7174709	7174709	Frame_Shift_Del	G	-	p.P336fs
LIHC	TCGA-DD-A1EG-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8136931:8137082:8137946:8138181:8139954:8140074,	8137947	8138181	8138153	8138153	Frame_Shift_Del	G	-	p.P2577fs
LIHC	TCGA-DD-A1EG-01	CD320	ENST00000301458.5	chr19	8367660:8367864:8368738:8368972:8369914:8370040,	8368739	8368972	8368939	8368939	Frame_Shift_Del	G	-	p.P104fs
LIHC	TCGA-DD-A1EG-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8961951:8962031:8962353:8962395:8966649:8966816,	8962354	8962395	8962385	8962385	Frame_Shift_Del	G	-	p.P14438fs
LIHC	TCGA-DD-A1EG-01	ZNF562	ENST00000453792.2	chr19	9764433:9764557:9768684:9768811:9770054:9770143,9767222:9767329:9768684:9768811:9770054:9770143,9767222:9767329:9768684:9768811:9771395:9771497,9767222:9767329:9768684:9768811:9785690:9785720,	9768685	9768811	9768781	9768781	Frame_Shift_Del	C	-	p.E49fs
LIHC	TCGA-DD-A1EG-01	ZNF846	ENST00000588267.1	chr19	9863065:9863116:9868734:9869440:9872757:9872841,	9868735	9869440	9869275	9869275	Frame_Shift_Del	A	-	p.Y160fs
LIHC	TCGA-DD-A1EG-01	ZNF846	ENST00000588267.1	chr19	9863065:9863116:9868734:9869440:9872757:9872841,	9868735	9869440	9869390	9869390	Frame_Shift_Del	T	-	p.K121fs
LIHC	TCGA-DD-A1EG-01	ZNF846	ENST00000589412.1,ENST00000397902.2	chr19	9869424:9869440:9870535:9870618:9872757:9872819,	9870536	9870618	9870568	9870568	Frame_Shift_Del	A	-	p.S94fs
LIHC	TCGA-DD-A1EG-01	ZNF846	ENST00000589412.1,ENST00000397902.2	chr19	9869424:9869440:9870535:9870618:9872757:9872819,	9870536	9870618	9870598	9870598	Frame_Shift_Del	T	-	p.T84fs
LIHC	TCGA-DD-A1EG-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4	chr19	10257026:10257200:10259559:10259693:10260128:10260333,	10259560	10259693	10259588	10259588	Frame_Shift_Del	T	-	p.T882fs
LIHC	TCGA-DD-A1EG-01	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461622:10461644:10461727:10461838:10463109:10463168,	10461728	10461838	10461763	10461763	Frame_Shift_Del	C	-	p.E1132fs
LIHC	TCGA-DD-A1EG-01	ATG4D	ENST00000309469.4,ENST00000586417.1	chr19	10655795:10655806:10657514:10657791:10657864:10657929,	10657515	10657791	10657524	10657524	Frame_Shift_Del	G	-	p.W168fs
LIHC	TCGA-DD-A1EG-01	ATG4D	ENST00000587256.1	chr19	10655795:10655806:10657514:10657758:10657864:10657929,	10657515	10657758	10657524	10657524	Frame_Shift_Del	G	-	p.W168fs
LIHC	TCGA-DD-A1EG-01	ATG4D	ENST00000590096.1	chr19	10655795:10655806:10657514:10657929:10659579:10659710,	10657515	10657929	10657524	10657524	Frame_Shift_Del	G	-	p.W168fs
LIHC	TCGA-DD-A1EG-01	ATG4D	ENST00000588857.1	chr19	10655795:10655806:10657514:10657747:10657864:10657929,	10657515	10657747	10657524	10657524	Frame_Shift_Del	G	-	p.W168fs
LIHC	TCGA-DD-A1EG-01	ILF3	ENST00000587928.1	chr19	10794592:10794646:10795091:10795152:10798021:10798117,	10795092	10795152	10795126	10795126	Frame_Shift_Del	T	-	p.D702fs
LIHC	TCGA-DD-A1EG-01	ILF3	ENST00000590261.1,ENST00000318511.3,ENST00000449870.1,ENST00000588657.1	chr19	10794592:10794646:10798021:10798384:10799225:10799354,	10798022	10798384	10798248	10798248	Frame_Shift_Del	C	-	p.S766fs
LIHC	TCGA-DD-A1EG-01	CARM1	ENST00000586221.1,ENST00000344150.4,ENST00000590699.1,ENST00000589693.1,ENST00000590039.1	chr19	10982585:10982598:11015626:11015752:11018714:11018821,	11015627	11015752	11015708	11015708	Frame_Shift_Del	C	-	p.T101fs
LIHC	TCGA-DD-A1EG-01	CARM1	ENST00000586508.1,ENST00000586221.1,ENST00000344150.4,ENST00000327064.4,ENST00000590699.1	chr19	11030604:11030642:11031111:11031249:11031334:11031424,	11031112	11031249	11031146	11031146	Frame_Shift_Del	C	-	p.P411fs
LIHC	TCGA-DD-A1EG-01	LDLR	ENST00000558013.1,ENST00000560467.1,ENST00000545707.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1,ENST00000455727.2,ENST00000535915.1	chr19	11222189:11222315:11223953:11224125:11224210:11224300,	11223954	11224125	11224036	11224036	Frame_Shift_Del	C	-	p.I423fs
LIHC	TCGA-DD-A1EG-01	KANK2	ENST00000432929.2,ENST00000589359.1,ENST00000589894.1,ENST00000586659.1,ENST00000355150.5	chr19	11285148:11285368:11286577:11286665:11287253:11287493,	11286578	11286665	11286651	11286651	Frame_Shift_Del	G	-	p.P600fs
LIHC	TCGA-DD-A1EG-01	DOCK6	ENST00000587656.1,ENST00000294618.7,ENST00000319867.7	chr19	11322668:11322827:11323851:11324004:11324950:11325085,	11323852	11324004	11323948	11323948	Frame_Shift_Del	C	-	p.R1465fs
LIHC	TCGA-DD-A1EG-01	DOCK6	ENST00000587656.1,ENST00000294618.7,ENST00000319867.7	chr19	11327906:11328067:11332526:11332696:11332784:11332924,	11332527	11332696	11332626	11332626	Frame_Shift_Del	G	-	p.R1151fs
LIHC	TCGA-DD-A1EG-01	RGL3	ENST00000563726.1,ENST00000380456.3,ENST00000566153.1,ENST00000562663.1,ENST00000393423.3	chr19	11507958:11508034:11508120:11508273:11510530:11510627,	11508121	11508273	11508267	11508267	Frame_Shift_Del	G	-	p.L585fs
LIHC	TCGA-DD-A1EG-01	ZNF69	ENST00000340180.5	chr19	12014719:12014780:12015463:12015702:12024223:12025144,	12015464	12015702	12015521	12015521	Frame_Shift_Del	T	-	p.T103fs
LIHC	TCGA-DD-A1EG-01	ZNF563	ENST00000595977.1	chr19	12430000:12430125:12430243:12430647:12432085:12432146,	12430244	12430647	12430310	12430310	Frame_Shift_Del	T	-	p.T177fs
LIHC	TCGA-DD-A1EG-01	ZNF563	ENST00000595977.1	chr19	12430000:12430125:12430243:12430647:12432085:12432146,	12430244	12430647	12430315	12430315	Frame_Shift_Del	C	-	p.G175fs
LIHC	TCGA-DD-A1EG-01	ZNF791	ENST00000458122.3,ENST00000343325.4,ENST00000598225.1,ENST00000597691.1	chr19	12734513:12734640:12735463:12735524:12738534:12738619,	12735464	12735524	12735467	12735467	Frame_Shift_Del	A	-	p.E45fs
LIHC	TCGA-DD-A1EG-01	ZNF791	ENST00000458122.3,ENST00000343325.4,ENST00000598225.1,ENST00000597691.1	chr19	12734513:12734640:12735463:12735524:12738534:12738619,	12735464	12735524	12735480	12735480	Frame_Shift_Del	C	-	p.D49fs
LIHC	TCGA-DD-A1EG-01	FBXW9	ENST00000393261.3,ENST00000380339.3	chr19	12805452:12805536:12805612:12805752:12806986:12807432,	12805613	12805752	12805650	12805650	Frame_Shift_Del	C	-	p.G171fs
LIHC	TCGA-DD-A1EG-01	BEST2	ENST00000549706.1,ENST00000553030.1,ENST00000042931.1	chr19	12865690:12865845:12866192:12866270:12866428:12866581,	12866193	12866270	12866203	12866203	Frame_Shift_Del	T	-	p.V216fs
LIHC	TCGA-DD-A1EG-01	HOOK2	ENST00000397668.3,ENST00000264827.5	chr19	12874341:12874413:12874481:12874592:12875627:12875731,	12874482	12874592	12874550	12874550	Frame_Shift_Del	C	-	p.A622fs
LIHC	TCGA-DD-A1EG-01	GCDH	ENST00000588905.1,ENST00000457854.1,ENST00000222214.5,ENST00000590627.1,ENST00000591470.1,ENST00000591043.1,ENST00000585420.1,ENST00000587832.1	chr19	13002644:13002788:13002929:13002992:13004296:13004307,	13002930	13002992	13002958	13002958	Frame_Shift_Del	G	-	p.M100fs
LIHC	TCGA-DD-A1EG-01	FARSA	ENST00000586280.1,ENST00000588965.1,ENST00000314606.4,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13039568:13039661:13041036:13041155:13041242:13041341,	13041037	13041155	13041134	13041134	Frame_Shift_Del	C	-	p.V176fs
LIHC	TCGA-DD-A1EG-01	NFIX	ENST00000360105.4,ENST00000358552.3	chr19	13184719:13184840:13186348:13186485:13192493:13192649,	13186349	13186485	13186394	13186394	Frame_Shift_Del	C	-	p.S287fs
LIHC	TCGA-DD-A1EG-01	LYL1	ENST00000590974.1	chr19	13211503:13211562:13211650:13211862:13213344:13213681,	13211651	13211862	13211696	13211696	Frame_Shift_Del	G	-	p.P98fs
LIHC	TCGA-DD-A1EG-01	STX10	ENST00000593126.1,ENST00000589083.1,ENST00000591197.1,ENST00000587318.1,ENST00000242770.5,ENST00000588848.1,ENST00000440593.3,ENST00000587230.1	chr19	13256116:13256209:13259842:13259905:13260312:13260407,	13259843	13259905	13259862	13259862	Frame_Shift_Del	A	-	p.L115fs
LIHC	TCGA-DD-A1EG-01	ZSWIM4	ENST00000254323.2,ENST00000590508.1,ENST00000440752.2	chr19	13928029:13928167:13928535:13928790:13930170:13930306,	13928536	13928790	13928586	13928586	Frame_Shift_Del	G	-	p.G457fs
LIHC	TCGA-DD-A1EG-01	ZSWIM4	ENST00000254323.2,ENST00000590508.1,ENST00000440752.2	chr19	13928535:13928790:13930170:13930306:13934159:13934314,	13930171	13930306	13930185	13930185	Frame_Shift_Del	G	-	p.G530fs
LIHC	TCGA-DD-A1EG-01	CC2D1A	ENST00000589606.1	chr19	14017254:14017314:14020635:14020771:14023135:14023251,	14020636	14020771	14020677	14020677	Frame_Shift_Del	C	-	p.I34fs
LIHC	TCGA-DD-A1EG-01	DCAF15	ENST00000587307.1,ENST00000254337.6	chr19	14071098:14071203:14071276:14071392:14071751:14071913,	14071277	14071392	14071352	14071352	Frame_Shift_Del	C	-	p.G569fs
LIHC	TCGA-DD-A1EG-01	DCAF15	ENST00000588523.1	chr19	14070795:14070881:14071098:14071392:14071751:14071913,	14071099	14071392	14071352	14071352	Frame_Shift_Del	C	-	p.G569fs
LIHC	TCGA-DD-A1EG-01	PRKACA	ENST00000589994.1,ENST00000308677.4,ENST00000350356.3	chr19	14203861:14204049:14204439:14204604:14208172:14208213,	14204440	14204604	14204505	14204505	Frame_Shift_Del	C	-	p.V289fs
LIHC	TCGA-DD-A1EG-01	DDX39A	ENST00000586558.1	chr19	14522371:14522410:14523362:14524036:14530081:14530135,	14523363	14524036	14523944	14523944	Frame_Shift_Del	G	-	p.P30fs
LIHC	TCGA-DD-A1EG-01	GIPC1	ENST00000345425.2,ENST00000393033.4,ENST00000586027.1,ENST00000393029.3,ENST00000393028.1,ENST00000587210.1,ENST00000591349.1	chr19	14590223:14590336:14591116:14591297:14591404:14591590,	14591117	14591297	14591165	14591165	Frame_Shift_Del	G	-	p.R203fs
LIHC	TCGA-DD-A1EG-01	TECR	ENST00000601187.1,ENST00000598333.1,ENST00000599101.1,ENST00000436007.2,ENST00000600083.1,ENST00000215567.5,ENST00000601350.1,ENST00000593775.1,ENST00000597607.1,ENST00000596073.1,ENST00000598987.1	chr19	14675877:14675935:14676013:14676102:14676429:14676472,	14676014	14676102	14676049	14676049	Frame_Shift_Del	A	-	p.N79fs
LIHC	TCGA-DD-A1EG-01	SLC1A6	ENST00000600144.1,ENST00000221742.3,ENST00000544886.2,ENST00000598504.1,ENST00000596697.1	chr19	15075130:15075173:15079114:15079319:15082548:15082686,	15079115	15079319	15079190	15079190	Frame_Shift_Del	C	-	p.G158fs
LIHC	TCGA-DD-A1EG-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276861	15276861	Frame_Shift_Del	C	-	p.A1802fs
LIHC	TCGA-DD-A1EG-01	NOTCH3	ENST00000263388.2	chr19	15292386:15292612:15295105:15295261:15295716:15295830,	15295106	15295261	15295221	15295221	Frame_Shift_Del	G	-	p.P817fs
LIHC	TCGA-DD-A1EG-01	BRD4	ENST00000263377.2	chr19	15353710:15354298:15355041:15355411:15355520:15355573,	15355042	15355411	15355182	15355182	Frame_Shift_Del	C	-	p.G814fs
LIHC	TCGA-DD-A1EG-01	BRD4	ENST00000360016.5,ENST00000594841.1,ENST00000263377.2,ENST00000371835.4	chr19	15376437:15376454:15378226:15378362:15379715:15379853,	15378227	15378362	15378305	15378305	Frame_Shift_Del	T	-	p.I161fs
LIHC	TCGA-DD-A1EG-01	BRD4	ENST00000360016.5,ENST00000597315.1	chr19	15379823:15379853:15383625:15383944:15443100:15443254,	15383626	15383944	15383737	15383737	Frame_Shift_Del	C	-	p.R58fs
LIHC	TCGA-DD-A1EG-01	AKAP8L	ENST00000397410.5,ENST00000595879.1,ENST00000609519.1,ENST00000593845.1,ENST00000594594.2,ENST00000595465.2	chr19	15510112:15510221:15511105:15511169:15511604:15511675,	15511106	15511169	15511146	15511146	Frame_Shift_Del	T	-	p.K336fs
LIHC	TCGA-DD-A1EG-01	RASAL3	ENST00000602101.2	chr19	15562468:15562749:15562855:15563626:15563917:15564297,	15562856	15563626	15563569	15563569	Frame_Shift_Del	G	-	p.R910fs
LIHC	TCGA-DD-A1EG-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16612295	16612295	Frame_Shift_Del	A	-	p.E231fs
LIHC	TCGA-DD-A1EG-01	C19orf44	ENST00000594035.1,ENST00000221671.3,ENST00000593380.1	chr19	16611602:16612362:16613875:16614191:16617511:16617585,	16613876	16614191	16614100	16614100	Frame_Shift_Del	G	-	p.M328fs
LIHC	TCGA-DD-A1EG-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17081700:17081843:17085906:17086068:17086811:17086878,	17085907	17086068	17085999	17085999	Frame_Shift_Del	A	-	p.W708fs
LIHC	TCGA-DD-A1EG-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000601564.1,ENST00000598517.1,ENST00000595958.1,ENST00000593360.1	chr19	17169620:17169686:17170366:17170461:17170806:17170899,	17170367	17170461	17170374	17170374	Frame_Shift_Del	T	-	p.K77fs
LIHC	TCGA-DD-A1EG-01	MVB12A	ENST00000528911.1,ENST00000600514.1,ENST00000529939.1,ENST00000543795.1,ENST00000317040.7	chr19	17531346:17531443:17533140:17533267:17534501:17534608,17531346:17531443:17533140:17533267:17534306:17534426,	17533141	17533267	17533251	17533251	Frame_Shift_Del	G	-	p.G133fs
LIHC	TCGA-DD-A1EG-01	SLC27A1	ENST00000442725.1,ENST00000600297.1,ENST00000598424.1,ENST00000252595.7,ENST00000599380.1	chr19	17598268:17598338:17599656:17599748:17599816:17599874,	17599657	17599748	17599730	17599730	Frame_Shift_Del	C	-	p.P290fs
LIHC	TCGA-DD-A1EG-01	FCHO1	ENST00000596536.1,ENST00000598086.1,ENST00000598932.1,ENST00000596507.1,ENST00000597512.1,ENST00000597718.1,ENST00000389133.4,ENST00000595033.1,ENST00000594202.1,ENST00000252771.7,ENST00000596309.1,ENST00000600676.1,ENST00000595023.1,ENST00000600209.1,ENST00000593833.1,ENST00000539407.1,ENST00000594068.1,ENST00000597474.1,ENST00000596865.1,ENST00000596951.1,ENST00000595549.1	chr19	17873570:17873662:17875183:17875258:17877477:17877560,	17875184	17875258	17875256	17875256	Frame_Shift_Del	G	-	p.M64fs
LIHC	TCGA-DD-A1EG-01	MAST3	ENST00000609076.1,ENST00000262811.6	chr19	18255951:18256039:18256552:18256675:18257690:18257784,	18256553	18256675	18256570	18256570	Frame_Shift_Del	C	-	p.S990fs
LIHC	TCGA-DD-A1EG-01	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507616	18507616	Frame_Shift_Del	G	-	p.P53fs
LIHC	TCGA-DD-A1EG-01	SSBP4	ENST00000348495.6,ENST00000601357.2,ENST00000598159.2,ENST00000601614.2,ENST00000600628.2,ENST00000597724.2,ENST00000602088.3,ENST00000270061.7	chr19	18538160:18538233:18538561:18538623:18538707:18538792,	18538562	18538623	18538595	18538595	Frame_Shift_Del	C	-	p.P57fs
LIHC	TCGA-DD-A1EG-01	HOMER3	ENST00000221222.11,ENST00000599097.1,ENST00000596482.1,ENST00000542541.2,ENST00000594439.1,ENST00000600077.1,ENST00000433218.2,ENST00000539827.1,ENST00000392351.3,ENST00000355887.6	chr19	19049207:19049293:19049536:19049693:19049777:19049791,	19049537	19049693	19049575	19049575	Frame_Shift_Del	G	-	p.R45fs
LIHC	TCGA-DD-A1EG-01	SLC25A42	ENST00000594070.1,ENST00000318596.7	chr19	19212603:19212695:19215721:19215747:19216369:19216536,	19215722	19215747	19215729	19215729	Frame_Shift_Del	A	-	p.S65fs
LIHC	TCGA-DD-A1EG-01	SLC25A42	ENST00000600275.1	chr19	19212603:19212695:19217077:19217194:19218702:19218797,	19217078	19217194	19217085	19217085	Frame_Shift_Del	C	-	p.P131fs
LIHC	TCGA-DD-A1EG-01	NCAN	ENST00000252575.6	chr19	19327755:19327835:19329723:19330125:19334829:19335004,	19329724	19330125	19329754	19329754	Frame_Shift_Del	G	-	p.R35fs
LIHC	TCGA-DD-A1EG-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338483	19338483	Frame_Shift_Del	C	-	p.T685fs
LIHC	TCGA-DD-A1EG-01	NCAN	ENST00000585410.1,ENST00000538881.1,ENST00000252575.6	chr19	19351411:19351494:19356121:19356266:19360574:19360738,19351411:19351494:19356121:19356266:19359508:19359691,	19356122	19356266	19356125	19356125	Frame_Shift_Del	T	-	p.F1166fs
LIHC	TCGA-DD-A1EG-01	SUGP1	ENST00000247001.5,ENST00000591007.2,ENST00000589144.1,ENST00000588731.2,ENST00000587119.1	chr19	19390993:19391100:19407797:19408153:19413073:19413185,	19407798	19408153	19407931	19407931	Frame_Shift_Del	G	-	p.P370fs
LIHC	TCGA-DD-A1EG-01	SUGP1	ENST00000535070.1	chr19	19413138:19413197:19414156:19414215:19416657:19416885,	19414157	19414215	19414196	19414196	Frame_Shift_Del	T	-	p.R242fs
LIHC	TCGA-DD-A1EG-01	SUGP1	ENST00000585444.1	chr19	19420905:19421009:19427055:19427402:19431271:19431279,	19427056	19427402	19427355	19427355	Frame_Shift_Del	T	-	p.M28fs
LIHC	TCGA-DD-A1EG-01	SUGP1	ENST00000247001.5,ENST00000334782.5,ENST00000535070.1,ENST00000585763.1,ENST00000588731.2,ENST00000588580.2,ENST00000606725.1	chr19	19420905:19421009:19427230:19427402:19431271:19431279,	19427231	19427402	19427355	19427355	Frame_Shift_Del	T	-	p.M28fs
LIHC	TCGA-DD-A1EG-01	GATAD2A	ENST00000252577.5,ENST00000417582.2,ENST00000360315.3	chr19	19516646:19516828:19576148:19576423:19603114:19603125,19496831:19496947:19576148:19576423:19603114:19603125,	19576149	19576423	19576211	19576211	Frame_Shift_Del	A	-	p.P19fs
LIHC	TCGA-DD-A1EG-01	GATAD2A	ENST00000404158.1	chr19	19546939:19547028:19576153:19576423:19603114:19603125,	19576154	19576423	19576211	19576211	Frame_Shift_Del	A	-	p.P19fs
LIHC	TCGA-DD-A1EG-01	ATP13A1	ENST00000357324.6,ENST00000291503.5,ENST00000497556.1	chr19	19756011:19756341:19756455:19756599:19756682:19756794,	19756456	19756599	19756560	19756560	Frame_Shift_Del	G	-	p.L1134fs
LIHC	TCGA-DD-A1EG-01	ZNF93	ENST00000588146.1	chr19	20011869:20011900:20027368:20027464:20043990:20044083,	20027369	20027464	20027415	20027415	Frame_Shift_Del	A	-	p.G59fs
LIHC	TCGA-DD-A1EG-01	ZNF681	ENST00000395385.3,ENST00000531570.1	chr19	23927868:23928125:23937624:23937699:23941548:23941639,	23937625	23937699	23937671	23937671	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A1EG-01	ZNF681	ENST00000528059.1	chr19	23927868:23928125:23937624:23937720:23941548:23941639,	23937625	23937720	23937671	23937671	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A1EG-01	ANKRD27	ENST00000587352.1,ENST00000306065.4	chr19	33132929:33133051:33134028:33134105:33134192:33134206,	33134029	33134105	33134087	33134087	Frame_Shift_Del	T	-	p.I242fs
LIHC	TCGA-DD-A1EG-01	SLC7A9	ENST00000587772.1,ENST00000590341.1,ENST00000023064.4	chr19	33355001:33355244:33355534:33355682:33359353:33359445,	33355535	33355682	33355592	33355592	Frame_Shift_Del	C	-	p.E60fs
LIHC	TCGA-DD-A1EG-01	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000591698.1	chr19	33378657:33378747:33390762:33390904:33392150:33392318,	33390763	33390904	33390901	33390901	Frame_Shift_Del	T	-	p.K579fs
LIHC	TCGA-DD-A1EG-01	CEP89	ENST00000305768.5,ENST00000591698.1	chr19	33409129:33409245:33414344:33414448:33417095:33417179,	33414345	33414448	33414399	33414399	Frame_Shift_Del	T	-	p.N405fs
LIHC	TCGA-DD-A1EG-01	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000590597.2	chr19	33422334:33422477:33424356:33424575:33428536:33428579,	33424357	33424575	33424403	33424403	Frame_Shift_Del	T	-	p.K280fs
LIHC	TCGA-DD-A1EG-01	SLC7A10	ENST00000253188.4	chr19	33701372:33701522:33701707:33701804:33702130:33702234,	33701708	33701804	33701777	33701777	Frame_Shift_Del	C	-	p.G348fs
LIHC	TCGA-DD-A1EG-01	PEPD	ENST00000436370.3,ENST00000244137.7,ENST00000397032.4	chr19	33878795:33878987:33882200:33882385:33892626:33892775,	33882201	33882385	33882272	33882272	Frame_Shift_Del	C	-	p.A361fs
LIHC	TCGA-DD-A1EG-01	LSM14A	ENST00000540746.2,ENST00000433627.5	chr19	34710613:34710782:34712411:34712643:34718269:34718522,34710613:34710782:34712411:34712643:34717312:34717369,	34712412	34712643	34712466	34712466	Frame_Shift_Del	A	-	p.G397fs
LIHC	TCGA-DD-A1EG-01	GPI	ENST00000356487.5,ENST00000586425.1,ENST00000415930.3,ENST00000588991.2	chr19	34870422:34870467:34872370:34872424:34884152:34884213,	34872371	34872424	34872420	34872420	Frame_Shift_Del	G	-	p.W278fs
LIHC	TCGA-DD-A1EG-01	ZNF302	ENST00000505163.1,ENST00000446502.2,ENST00000423823.2,ENST00000509196.1,ENST00000457781.2,ENST00000505242.1	chr19	35173681:35173802:35174059:35174143:35175156:35175369,	35174060	35174143	35174128	35174128	Frame_Shift_Del	A	-	p.K68fs
LIHC	TCGA-DD-A1EG-01	GRAMD1A	ENST00000317991.5,ENST00000599564.1,ENST00000411896.2	chr19	35502387:35502458:35504159:35504272:35504444:35504595,	35504160	35504272	35504248	35504248	Frame_Shift_Del	C	-	p.S319fs
LIHC	TCGA-DD-A1EG-01	GRAMD1A	ENST00000504615.2,ENST00000317991.5,ENST00000599564.1,ENST00000411896.2,ENST00000600231.1	chr19	35504510:35504595:35505092:35505291:35506727:35506871,	35505093	35505291	35505249	35505249	Frame_Shift_Del	T	-	p.L430fs
LIHC	TCGA-DD-A1EG-01	FXYD3	ENST00000344013.6,ENST00000605552.1,ENST00000603181.1,ENST00000435734.2	chr19	35608209:35608282:35610071:35610155:35610266:35610320,35607223:35607263:35610071:35610155:35610266:35610320,	35610072	35610155	35610079	35610079	Frame_Shift_Del	T	-	p.S27fs
LIHC	TCGA-DD-A1EG-01	LGI4	ENST00000310123.3,ENST00000493050.1	chr19	35615569:35616411:35617173:35617679:35617756:35617921,	35617174	35617679	35617182	35617182	Frame_Shift_Del	C	-	p.G456fs
LIHC	TCGA-DD-A1EG-01	FXYD5	ENST00000392219.2,ENST00000588699.1,ENST00000423817.3,ENST00000541435.2,ENST00000592290.1,ENST00000590686.1,ENST00000591716.2,ENST00000342879.3,ENST00000543307.1,ENST00000496493.1	chr19	35651665:35651704:35655058:35655148:35657044:35657074,	35655059	35655148	35655101	35655101	Frame_Shift_Del	C	-	p.S112fs
LIHC	TCGA-DD-A1EG-01	MAG	ENST00000537831.2,ENST00000392213.3	chr19	35801514:35801546:35802820:35802920:35804192:35804707,	35802821	35802920	35802839	35802839	Frame_Shift_Del	C	-	p.S545fs
LIHC	TCGA-DD-A1EG-01	CD22	ENST00000598028.1	chr19	35823555:35823827:35826938:35827244:35831783:35831853,35820114:35820133:35826938:35827244:35828657:35828710,	35826939	35827244	35827072	35827072	Frame_Shift_Del	A	-	p.P182fs
LIHC	TCGA-DD-A1EG-01	CD22	ENST00000270311.6,ENST00000419549.2,ENST00000085219.5,ENST00000544992.2,ENST00000601769.1	chr19	35828657:35828924:35829070:35829334:35831783:35831853,	35829071	35829334	35829246	35829246	Frame_Shift_Del	C	-	p.L387fs
LIHC	TCGA-DD-A1EG-01	SBSN	ENST00000518157.1	chr19	36015760:36015826:36017545:36017779:36018808:36019123,	36017546	36017779	36017747	36017747	Frame_Shift_Del	C	-	p.G479fs
LIHC	TCGA-DD-A1EG-01	TMEM147	ENST00000477168.2	chr19	36037427:36037487:36037573:36037931:36038020:36038142,	36037574	36037931	36037643	36037643	Frame_Shift_Del	G	-	p.G44fs
LIHC	TCGA-DD-A1EG-01	TMEM147	ENST00000222284.5,ENST00000392205.1,ENST00000392204.2	chr19	36037427:36037487:36037573:36037710:36037846:36037931,	36037574	36037710	36037643	36037643	Frame_Shift_Del	G	-	p.G44fs
LIHC	TCGA-DD-A1EG-01	ATP4A	ENST00000262623.3	chr19	36045823:36045978:36046067:36046236:36046341:36046492,	36046068	36046236	36046212	36046212	Frame_Shift_Del	C	-	p.D728fs
LIHC	TCGA-DD-A1EG-01	RBM42	ENST00000588161.1	chr19	36122232:36122307:36124002:36124154:36124588:36124921,	36124003	36124154	36124052	36124052	Frame_Shift_Del	C	-	p.G194fs
LIHC	TCGA-DD-A1EG-01	RBM42	ENST00000360475.4,ENST00000589559.1	chr19	36122232:36122307:36123999:36124154:36124588:36124921,	36124000	36124154	36124052	36124052	Frame_Shift_Del	C	-	p.G194fs
LIHC	TCGA-DD-A1EG-01	RBM42	ENST00000589871.1	chr19	36122232:36122307:36123978:36124154:36124588:36124921,	36123979	36124154	36124052	36124052	Frame_Shift_Del	C	-	p.G194fs
LIHC	TCGA-DD-A1EG-01	COX6B1	ENST00000592141.1,ENST00000246554.3,ENST00000392201.1	chr19	36142146:36142251:36145472:36145573:36149495:36149628,	36145473	36145573	36145480	36145480	Frame_Shift_Del	C	-	p.H38fs
LIHC	TCGA-DD-A1EG-01	ARHGAP33	ENST00000590893.1,ENST00000314737.5,ENST00000007510.4	chr19	36266476:36266566:36268546:36268644:36268725:36268810,	36268547	36268644	36268610	36268610	Frame_Shift_Del	G	-	p.G25fs
LIHC	TCGA-DD-A1EG-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431480	36431480	Frame_Shift_Del	C	-	p.P389fs
LIHC	TCGA-DD-A1EG-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431584	36431584	Frame_Shift_Del	G	-	p.K419fs
LIHC	TCGA-DD-A1EG-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431683	36431683	Frame_Shift_Del	G	-	p.P452fs
LIHC	TCGA-DD-A1EG-01	CLIP3	ENST00000593074.1,ENST00000360535.4	chr19	36506937:36507114:36507808:36507881:36508287:36508352,	36507809	36507881	36507842	36507842	Frame_Shift_Del	G	-	p.P519fs
LIHC	TCGA-DD-A1EG-01	CAPNS1	ENST00000591041.1,ENST00000586963.1,ENST00000590049.1,ENST00000588815.1,ENST00000590874.1,ENST00000592354.1,ENST00000587718.1,ENST00000586851.1,ENST00000246533.3	chr19	36633810:36633868:36633965:36634030:36636707:36636742,	36633966	36634030	36633988	36633988	Frame_Shift_Del	T	-	p.G138fs
LIHC	TCGA-DD-A1EG-01	SIPA1L3	ENST00000222345.6	chr19	38519728:38519796:38571895:38573739:38579360:38579491,	38571896	38573739	38572578	38572578	Frame_Shift_Del	C	-	p.P126fs
LIHC	TCGA-DD-A1EG-01	DPF1	ENST00000438060.1,ENST00000355526.4,ENST00000473716.1,ENST00000414789.1,ENST00000416611.1,ENST00000412732.1,ENST00000418517.1,ENST00000471976.1,ENST00000456296.1	chr19	38706881:38706899:38706992:38707043:38708437:38708516,38706881:38706899:38706992:38707043:38708099:38708231,	38706993	38707043	38707020	38707020	Frame_Shift_Del	C	-	p.V252fs
LIHC	TCGA-DD-A1EG-01	CATSPERG	ENST00000410018.1,ENST00000409410.2,ENST00000409235.3	chr19	38837123:38837245:38842900:38843072:38845349:38845487,	38842901	38843072	38842939	38842939	Frame_Shift_Del	C	-	p.C288fs
LIHC	TCGA-DD-A1EG-01	PSMD8	ENST00000591216.1	chr19	38865427:38865601:38866799:38867094:38869879:38870003,	38866800	38867094	38867009	38867009	Frame_Shift_Del	G	-	p.G151fs
LIHC	TCGA-DD-A1EG-01	PSMD8	ENST00000592035.1,ENST00000592001.1,ENST00000602911.1,ENST00000215071.4,ENST00000591250.1,ENST00000592561.1	chr19	38866803:38866872:38866991:38867094:38869879:38870003,	38866992	38867094	38867009	38867009	Frame_Shift_Del	G	-	p.G151fs
LIHC	TCGA-DD-A1EG-01	GGN	ENST00000334928.6	chr19	38874992:38875169:38876060:38877920:38878400:38878462,	38876061	38877920	38877138	38877138	Frame_Shift_Del	G	-	p.P256fs
LIHC	TCGA-DD-A1EG-01	GGN	ENST00000585737.1	chr19	38876060:38876140:38876286:38877654:38878400:38878462,	38876287	38877654	38877138	38877138	Frame_Shift_Del	G	-	p.P256fs
LIHC	TCGA-DD-A1EG-01	SPRED3	ENST00000586301.1,ENST00000587013.1,ENST00000338502.4	chr19	38882851:38882928:38885282:38885426:38886119:38886788,	38885283	38885426	38885350	38885350	Frame_Shift_Del	C	-	p.A208fs
LIHC	TCGA-DD-A1EG-01	MAP4K1	ENST00000589130.1,ENST00000423454.2,ENST00000591921.1,ENST00000585583.1,ENST00000396857.2,ENST00000591517.1	chr19	39096048:39096131:39096207:39096370:39096812:39096855,	39096208	39096370	39096306	39096306	Frame_Shift_Del	G	-	p.P422fs
LIHC	TCGA-DD-A1EG-01	ACTN4	ENST00000390009.3,ENST00000424234.2,ENST00000252699.2	chr19	39217596:39217743:39218585:39218666:39219635:39219794,	39218586	39218666	39218660	39218660	Frame_Shift_Del	C	-	p.D804fs
LIHC	TCGA-DD-A1EG-01	LGALS4	ENST00000596628.1,ENST00000595278.1,ENST00000597153.1,ENST00000600070.1,ENST00000307751.4	chr19	39294508:39294535:39297100:39297235:39299383:39299435,	39297101	39297235	39297225	39297225	Frame_Shift_Del	T	-	p.N117fs
LIHC	TCGA-DD-A1EG-01	SIRT2	ENST00000462654.1,ENST00000249396.7,ENST00000392081.2	chr19	39370073:39370140:39370271:39370342:39371324:39371376,	39370272	39370342	39370325	39370325	Frame_Shift_Del	C	-	p.G298fs
LIHC	TCGA-DD-A1EG-01	SARS2	ENST00000594171.1,ENST00000600042.1,ENST00000600448.1,ENST00000448145.2,ENST00000221431.6,ENST00000430193.3	chr19	39410401:39410507:39410725:39410789:39412031:39412086,	39410726	39410789	39410786	39410786	Frame_Shift_Del	A	-	p.F198fs
LIHC	TCGA-DD-A1EG-01	PAF1	ENST00000595564.1,ENST00000221265.3,ENST00000221266.7	chr19	39877333:39877439:39878978:39879107:39879199:39879316,	39878979	39879107	39879036	39879036	Frame_Shift_Del	T	-	p.N310fs
LIHC	TCGA-DD-A1EG-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39915348	39915348	Frame_Shift_Del	A	-	p.Q1163fs
LIHC	TCGA-DD-A1EG-01	TIMM50	ENST00000602265.1,ENST00000595286.1,ENST00000607714.1,ENST00000602028.1,ENST00000599733.1,ENST00000597782.1,ENST00000598125.1,ENST00000544017.1,ENST00000601358.1	chr19	39971567:39971601:39972522:39972673:39976183:39976242,39971567:39971601:39972522:39972673:39973524:39973556,	39972523	39972673	39972604	39972604	Frame_Shift_Del	A	-	p.K168fs
LIHC	TCGA-DD-A1EG-01	TIMM50	ENST00000602265.1,ENST00000597666.1,ENST00000544017.1,ENST00000601358.1	chr19	39976183:39976242:39976327:39976447:39976826:39976931,39973774:39973796:39976327:39976447:39976826:39976931,	39976328	39976447	39976351	39976351	Frame_Shift_Del	T	-	p.P235fs
LIHC	TCGA-DD-A1EG-01	TIMM50	ENST00000602265.1,ENST00000314349.4,ENST00000601403.1,ENST00000595961.1,ENST00000607714.1,ENST00000602028.1,ENST00000597666.1,ENST00000544017.1,ENST00000601358.1	chr19	39976826:39976931:39977036:39977135:39978700:39978814,	39977037	39977135	39977043	39977043	Frame_Shift_Del	T	-	p.F305fs
LIHC	TCGA-DD-A1EG-01	DYRK1B	ENST00000597639.1,ENST00000348817.3	chr19	40317311:40317507:40317591:40317627:40317924:40318065,	40317592	40317627	40317617	40317617	Frame_Shift_Del	C	-	p.G369fs
LIHC	TCGA-DD-A1EG-01	DYRK1B	ENST00000593685.1,ENST00000323039.5	chr19	40316819:40316926:40317311:40317627:40317924:40318065,	40317312	40317627	40317617	40317617	Frame_Shift_Del	C	-	p.G369fs
LIHC	TCGA-DD-A1EG-01	FBL	ENST00000599159.1,ENST00000221801.3	chr19	40331053:40331155:40331256:40331427:40336930:40336969,	40331257	40331427	40331340	40331340	Frame_Shift_Del	C	-	p.G33fs
LIHC	TCGA-DD-A1EG-01	FBL	ENST00000599134.1	chr19	40331053:40331155:40331295:40331427:40336930:40336969,	40331296	40331427	40331340	40331340	Frame_Shift_Del	C	-	p.G33fs
LIHC	TCGA-DD-A1EG-01	FBL	ENST00000594309.1	chr19	40331053:40331155:40331259:40331427:40336930:40336969,	40331260	40331427	40331340	40331340	Frame_Shift_Del	C	-	p.G33fs
LIHC	TCGA-DD-A1EG-01	PSMC4	ENST00000455878.2,ENST00000593455.1,ENST00000601697.1,ENST00000157812.2	chr19	40480641:40480735:40485723:40485891:40485976:40486053,	40485724	40485891	40485888	40485888	Frame_Shift_Del	G	-	p.G280fs
LIHC	TCGA-DD-A1EG-01	MAP3K10	ENST00000597986.1,ENST00000253055.3	chr19	40718982:40719095:40719423:40720128:40720876:40721435,	40719424	40720128	40719462	40719462	Frame_Shift_Del	C	-	p.P627fs
LIHC	TCGA-DD-A1EG-01	LTBP4	ENST00000595665.1,ENST00000597071.1,ENST00000600499.1,ENST00000593463.1	chr19	41120220:41120352:41122794:41122926:41123005:41123094,41120220:41120352:41122794:41122926:41125251:41125281,	41122795	41122926	41122911	41122911	Frame_Shift_Del	G	-	p.G1046fs
LIHC	TCGA-DD-A1EG-01	LTBP4	ENST00000594448.1	chr19	41120220:41120352:41122794:41122948:41125251:41125281,	41122795	41122948	41122911	41122911	Frame_Shift_Del	G	-	p.G1046fs
LIHC	TCGA-DD-A1EG-01	CYP2F1	ENST00000331105.2,ENST00000532164.2	chr19	41630759:41630811:41631397:41631539:41633805:41634159,	41631398	41631539	41631472	41631472	Frame_Shift_Del	C	-	p.N409fs
LIHC	TCGA-DD-A1EG-01	CYP2S1	ENST00000310054.4	chr19	41704366:41704527:41704613:41704793:41707135:41707204,	41704614	41704793	41704644	41704644	Frame_Shift_Del	C	-	p.P229fs
LIHC	TCGA-DD-A1EG-01	CYP2S1	ENST00000310054.4	chr19	41704366:41704527:41704613:41704793:41707135:41707204,	41704614	41704793	41704655	41704655	Frame_Shift_Del	C	-	p.G232fs
LIHC	TCGA-DD-A1EG-01	HNRNPUL1	ENST00000595806.1,ENST00000378215.4,ENST00000352456.3	chr19	41810147:41810166:41811550:41811772:41812353:41812830,	41811551	41811772	41811722	41811722	Frame_Shift_Del	C	-	p.P803fs
LIHC	TCGA-DD-A1EG-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000595018.1,ENST00000263367.3,ENST00000593587.1	chr19	41810147:41810166:41811580:41811772:41812353:41812830,	41811581	41811772	41811722	41811722	Frame_Shift_Del	C	-	p.P803fs
LIHC	TCGA-DD-A1EG-01	TGFB1	ENST00000221930.5,ENST00000597453.1	chr19	41848074:41848152:41850651:41850769:41854199:41854246,	41850652	41850769	41850658	41850658	Frame_Shift_Del	G	-	p.R210fs
LIHC	TCGA-DD-A1EG-01	CEACAM4	ENST00000221954.2	chr19	42126947:42127000:42128023:42128141:42131974:42132334,	42128024	42128141	42128058	42128058	Frame_Shift_Del	G	-	p.L170fs
LIHC	TCGA-DD-A1EG-01	ARHGEF1	ENST00000347545.4,ENST00000594044.1,ENST00000337665.4,ENST00000600274.1,ENST00000599589.1,ENST00000595897.1,ENST00000354532.3,ENST00000378152.4,ENST00000599846.1	chr19	42406735:42406808:42406933:42407048:42407456:42407557,	42406934	42407048	42407036	42407036	Frame_Shift_Del	G	-	p.G632fs
LIHC	TCGA-DD-A1EG-01	POU2F2	ENST00000560558.1,ENST00000389341.5,ENST00000526816.2,ENST00000560398.1,ENST00000534559.1	chr19	42596018:42596092:42596220:42596422:42597980:42598047,42595381:42595743:42596220:42596422:42597980:42598047,	42596221	42596422	42596359	42596359	Frame_Shift_Del	C	-	p.G408fs
LIHC	TCGA-DD-A1EG-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795886	42795886	Frame_Shift_Del	C	-	p.P1869fs
LIHC	TCGA-DD-A1EG-01	PSG8	ENST00000306511.4	chr19	43262153:43262432:43268067:43268433:43269669:43269814,	43268068	43268433	43268320	43268320	Frame_Shift_Del	G	-	p.Q60fs
LIHC	TCGA-DD-A1EG-01	PSG6	ENST00000187910.2,ENST00000292125.2	chr19	43411073:43411328:43411727:43412006:43414731:43414956,	43411728	43412006	43411963	43411963	Frame_Shift_Del	G	-	p.P250fs
LIHC	TCGA-DD-A1EG-01	PSG6	ENST00000599753.1	chr19	43411073:43411328:43411727:43412089:43414731:43414956,	43411728	43412089	43411963	43411963	Frame_Shift_Del	G	-	p.P250fs
LIHC	TCGA-DD-A1EG-01	PSG11	ENST00000401740.1,ENST00000320078.7	chr19	43522921:43523200:43528842:43529208:43530460:43530618,	43528843	43529208	43528941	43528941	Frame_Shift_Del	T	-	p.N111fs
LIHC	TCGA-DD-A1EG-01	PSG5	ENST00000599812.1,ENST00000407356.1,ENST00000366175.3,ENST00000342951.6	chr19	43674206:43674290:43679366:43679621:43680021:43680300,	43679367	43679621	43679555	43679555	Frame_Shift_Del	A	-	p.L259fs
LIHC	TCGA-DD-A1EG-01	ETHE1	ENST00000602138.1,ENST00000292147.2,ENST00000600651.1	chr19	44015681:44015718:44030352:44030501:44030666:44030811,	44030353	44030501	44030418	44030418	Frame_Shift_Del	G	-	p.R104fs
LIHC	TCGA-DD-A1EG-01	CEACAM19	ENST00000480278.1,ENST00000403660.3,ENST00000358777.4	chr19	45179542:45179693:45182124:45182208:45183559:45183606,	45182125	45182208	45182146	45182146	Frame_Shift_Del	G	-	p.Q199fs
LIHC	TCGA-DD-A1EG-01	APOE	ENST00000446996.1	chr19	45409052:45409098:45409843:45409924:45411016:45411144,	45409844	45409924	45409887	45409887	Frame_Shift_Del	G	-	p.K2fs
LIHC	TCGA-DD-A1EG-01	APOE	ENST00000446996.1,ENST00000434152.1,ENST00000252486.4,ENST00000425718.1	chr19	45409873:45409924:45411016:45411209:45411789:45411859,	45411017	45411209	45411197	45411197	Frame_Shift_Del	C	-	p.T75fs
LIHC	TCGA-DD-A1EG-01	APOC1	ENST00000590334.1	chr19	45418395:45418474:45419446:45419582:45422429:45422466,45418130:45418206:45419446:45419582:45422429:45422466,45418130:45418206:45419446:45419582:45422097:45422126,	45419447	45419582	45419468	45419468	Frame_Shift_Del	C	-	p.T27fs
LIHC	TCGA-DD-A1EG-01	APOC1	ENST00000592885.1	chr19	45418130:45418206:45419446:45419727:45422429:45422466,	45419447	45419727	45419468	45419468	Frame_Shift_Del	C	-	p.T27fs
LIHC	TCGA-DD-A1EG-01	APOC1	ENST00000586638.1	chr19	45418130:45418206:45419446:45419616:45422429:45422466,	45419447	45419616	45419468	45419468	Frame_Shift_Del	C	-	p.T27fs
LIHC	TCGA-DD-A1EG-01	CLPTM1	ENST00000588855.1,ENST00000546079.1,ENST00000541297.2,ENST00000337392.5	chr19	45476343:45476467:45477695:45477854:45480599:45480717,	45477696	45477854	45477763	45477763	Frame_Shift_Del	G	-	p.W112fs
LIHC	TCGA-DD-A1EG-01	EML2	ENST00000590819.1	chr19	46124811:46124895:46127976:46128076:46129962:46130010,46124464:46124590:46127976:46128076:46129962:46130010,	46127977	46128076	46128036	46128036	Frame_Shift_Del	A	-	p.L408fs
LIHC	TCGA-DD-A1EG-01	EML2	ENST00000587804.1	chr19	46133221:46133304:46136118:46136397:46137579:46137729,	46136119	46136397	46136160	46136160	Frame_Shift_Del	C	-	p.V304fs
LIHC	TCGA-DD-A1EG-01	SYMPK	ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46331094:46331176:46332227:46332463:46333311:46333462,	46332228	46332463	46332356	46332356	Frame_Shift_Del	G	-	p.A619fs
LIHC	TCGA-DD-A1EG-01	SYMPK	ENST00000600237.1	chr19	46331094:46331176:46332312:46332463:46333311:46333462,	46332313	46332463	46332356	46332356	Frame_Shift_Del	G	-	p.A619fs
LIHC	TCGA-DD-A1EG-01	SYMPK	ENST00000593504.1,ENST00000600237.1,ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46333311:46333462:46334641:46334846:46338335:46338486,	46334642	46334846	46334706	46334706	Frame_Shift_Del	G	-	p.L512fs
LIHC	TCGA-DD-A1EG-01	NOVA2	ENST00000263257.5,ENST00000596784.1	chr19	46444151:46444203:46457037:46457204:46464267:46464411,	46457038	46457204	46457070	46457070	Frame_Shift_Del	G	-	p.Q122fs
LIHC	TCGA-DD-A1EG-01	IGFL2	ENST00000593592.1,ENST00000377693.4,ENST00000600243.1,ENST00000434646.2	chr19	46663671:46663725:46663870:46664138:46664326:46664545,	46663871	46664138	46663999	46663999	Frame_Shift_Del	C	-	p.P80fs
LIHC	TCGA-DD-A1EG-01	PRKD2	ENST00000602155.1,ENST00000291281.4,ENST00000601806.1,ENST00000597390.1,ENST00000597589.1,ENST00000600194.1,ENST00000433867.1	chr19	47178289:47178375:47181652:47181920:47184906:47185005,	47181653	47181920	47181707	47181707	Frame_Shift_Del	G	-	p.Q762fs
LIHC	TCGA-DD-A1EG-01	PRKD2	ENST00000599019.1,ENST00000595515.1	chr19	47178289:47178375:47181622:47181920:47184906:47185005,	47181623	47181920	47181707	47181707	Frame_Shift_Del	G	-	p.Q762fs
LIHC	TCGA-DD-A1EG-01	PRKD2	ENST00000602155.1,ENST00000291281.4,ENST00000601806.1,ENST00000597390.1,ENST00000597589.1,ENST00000600194.1,ENST00000433867.1	chr19	47178289:47178375:47181652:47181920:47184906:47185005,	47181653	47181920	47181831	47181831	Frame_Shift_Del	G	-	p.P720fs
LIHC	TCGA-DD-A1EG-01	PRKD2	ENST00000599019.1,ENST00000595515.1	chr19	47178289:47178375:47181622:47181920:47184906:47185005,	47181623	47181920	47181831	47181831	Frame_Shift_Del	G	-	p.P720fs
LIHC	TCGA-DD-A1EG-01	STRN4	ENST00000435164.2	chr19	47231163:47231264:47231874:47232034:47233988:47234114,47231150:47231383:47231874:47232034:47233988:47234114,	47231875	47232034	47231946	47231946	Frame_Shift_Del	C	-	p.G323fs
LIHC	TCGA-DD-A1EG-01	ZC3H4	ENST00000253048.5,ENST00000594019.1,ENST00000597069.1	chr19	47593275:47593446:47597226:47597337:47597645:47597744,	47597227	47597337	47597237	47597237	Frame_Shift_Del	G	-	p.P161fs
LIHC	TCGA-DD-A1EG-01	DHX34	ENST00000328771.4,ENST00000486327.2,ENST00000460681.1	chr19	47880356:47880463:47882966:47883242:47884072:47884249,	47882967	47883242	47882977	47882977	Frame_Shift_Del	T	-	p.L906fs
LIHC	TCGA-DD-A1EG-01	ZNF541	ENST00000314121.4,ENST00000448976.1	chr19	48047382:48049237:48052501:48052742:48058806:48059113,	48052502	48052742	48052646	48052646	Frame_Shift_Del	G	-	p.P135fs
LIHC	TCGA-DD-A1EG-01	ELSPBP1	ENST00000339841.2	chr19	48511907:48511994:48519149:48519296:48522975:48523134,48517427:48517565:48519149:48519296:48522975:48523134,	48519150	48519296	48519266	48519266	Frame_Shift_Del	A	-	p.K109fs
LIHC	TCGA-DD-A1EG-01	PLA2G4C	ENST00000599111.1,ENST00000599921.1,ENST00000596510.1,ENST00000413144.2,ENST00000354276.3	chr19	48556253:48556404:48558134:48558306:48565254:48565409,	48558135	48558306	48558163	48558163	Frame_Shift_Del	A	-	p.F467fs
LIHC	TCGA-DD-A1EG-01	LIG1	ENST00000601091.1,ENST00000594067.1,ENST00000263274.7,ENST00000536218.1,ENST00000594759.1,ENST00000427526.2	chr19	48619129:48619222:48620894:48621038:48622393:48622447,	48620895	48621038	48620964	48620964	Frame_Shift_Del	G	-	p.P838fs
LIHC	TCGA-DD-A1EG-01	LIG1	ENST00000601091.1,ENST00000594067.1,ENST00000263274.7,ENST00000536218.1,ENST00000594759.1,ENST00000427526.2	chr19	48636238:48636354:48637237:48637323:48638936:48638979,	48637238	48637323	48637310	48637310	Frame_Shift_Del	G	-	p.L513fs
LIHC	TCGA-DD-A1EG-01	CARD8	ENST00000518622.1,ENST00000447740.2,ENST00000521613.1,ENST00000517510.1,ENST00000359009.4,ENST00000522773.1,ENST00000519646.1,ENST00000519940.1,ENST00000520153.1,ENST00000521415.1,ENST00000391898.3,ENST00000522051.1,ENST00000357778.5	chr19	48718596:48718641:48724986:48725112:48733694:48733755,48722127:48722269:48724986:48725112:48733694:48733755,	48724987	48725112	48725034	48725034	Frame_Shift_Del	A	-	p.S373fs
LIHC	TCGA-DD-A1EG-01	CCDC114	ENST00000315396.7,ENST00000474199.1	chr19	48800846:48800925:48801256:48801354:48801433:48801597,	48801257	48801354	48801278	48801278	Frame_Shift_Del	G	-	p.P457fs
LIHC	TCGA-DD-A1EG-01	SYNGR4	ENST00000344846.2	chr19	48876773:48877011:48878869:48879009:48879341:48879528,	48878870	48879009	48878952	48878952	Frame_Shift_Del	G	-	p.L138fs
LIHC	TCGA-DD-A1EG-01	LMTK3	ENST00000270238.3	chr19	49013279:49013430:49013715:49013849:49014757:49014870,	49013716	49013849	49013820	49013820	Frame_Shift_Del	C	-	p.A36fs
LIHC	TCGA-DD-A1EG-01	LMTK3	ENST00000270238.3	chr19	49013279:49013430:49013715:49013849:49014757:49014870,	49013716	49013849	49013843	49013843	Frame_Shift_Del	A	-	p.F28fs
LIHC	TCGA-DD-A1EG-01	RPL18	ENST00000550973.1,ENST00000549370.1,ENST00000549920.1,ENST00000552588.1,ENST00000549273.1,ENST00000084795.5	chr19	49119187:49119203:49119335:49119459:49119982:49120081,	49119336	49119459	49119365	49119365	Frame_Shift_Del	G	-	p.P131fs
LIHC	TCGA-DD-A1EG-01	RPL18	ENST00000546623.1	chr19	49119187:49119203:49119335:49119477:49119982:49120081,	49119336	49119477	49119365	49119365	Frame_Shift_Del	G	-	p.P131fs
LIHC	TCGA-DD-A1EG-01	SPHK2	ENST00000601712.1	chr19	49123658:49123810:49129206:49129619:49130948:49131098,	49129207	49129619	49129367	49129367	Frame_Shift_Del	C	-	p.P149fs
LIHC	TCGA-DD-A1EG-01	SPHK2	ENST00000600537.1	chr19	49123771:49123810:49129324:49129619:49130948:49131098,	49129325	49129619	49129367	49129367	Frame_Shift_Del	C	-	p.P149fs
LIHC	TCGA-DD-A1EG-01	SPHK2	ENST00000598088.1,ENST00000245222.4,ENST00000340932.3	chr19	49123771:49123810:49129147:49129619:49130948:49131098,	49129148	49129619	49129367	49129367	Frame_Shift_Del	C	-	p.P149fs
LIHC	TCGA-DD-A1EG-01	NTN5	ENST00000596844.1,ENST00000270235.4	chr19	49165221:49165298:49166719:49166800:49167017:49167071,	49166720	49166800	49166759	49166759	Frame_Shift_Del	C	-	p.V356fs
LIHC	TCGA-DD-A1EG-01	RASIP1	ENST00000222145.4	chr19	49227593:49227766:49227973:49228217:49230041:49230145,	49227974	49228217	49228149	49228149	Frame_Shift_Del	C	-	p.G732fs
LIHC	TCGA-DD-A1EG-01	RASIP1	ENST00000222145.4	chr19	49230041:49230145:49230263:49230415:49230649:49230687,	49230264	49230415	49230397	49230397	Frame_Shift_Del	G	-	p.P630fs
LIHC	TCGA-DD-A1EG-01	NUCB1	ENST00000492367.1,ENST00000405315.4,ENST00000407032.1,ENST00000263273.5,ENST00000485798.1	chr19	49424410:49424581:49425083:49425189:49425574:49425722,	49425084	49425189	49425142	49425142	Frame_Shift_Del	C	-	p.A411fs
LIHC	TCGA-DD-A1EG-01	DHDH	ENST00000520557.1	chr19	49445696:49445821:49447613:49447764:49448080:49448216,49442705:49442958:49447613:49447764:49448080:49448216,	49447614	49447764	49447691	49447691	Frame_Shift_Del	A	-	p.P274fs
LIHC	TCGA-DD-A1EG-01	RUVBL2	ENST00000596247.1	chr19	49502575:49502630:49506535:49506591:49507533:49507639,49496872:49497159:49506535:49506591:49507533:49507639,49502575:49502630:49506535:49506591:49507463:49507675,	49506536	49506591	49506554	49506554	Frame_Shift_Del	G	-	p.R29fs
LIHC	TCGA-DD-A1EG-01	RUVBL2	ENST00000221413.6	chr19	49510558:49510625:49513032:49513128:49513229:49513323,	49513033	49513128	49513112	49513112	Frame_Shift_Del	C	-	p.S136fs
LIHC	TCGA-DD-A1EG-01	RUVBL2	ENST00000601968.1,ENST00000413176.2,ENST00000594017.1,ENST00000595090.1,ENST00000596247.1,ENST00000594338.1	chr19	49510558:49510625:49513032:49513139:49513229:49513323,	49513033	49513139	49513112	49513112	Frame_Shift_Del	C	-	p.S136fs
LIHC	TCGA-DD-A1EG-01	LIN7B	ENST00000391864.3	chr19	49618105:49618224:49618516:49618588:49619519:49619729,49618105:49618224:49618516:49618588:49621111:49621252,	49618517	49618588	49618586	49618586	Frame_Shift_Del	A	-	p.K76fs
LIHC	TCGA-DD-A1EG-01	TRPM4	ENST00000598502.1,ENST00000427978.2,ENST00000595519.1,ENST00000252826.5	chr19	49674841:49675026:49675265:49675365:49685834:49686179,49674834:49675026:49675265:49675365:49684605:49684718,	49675266	49675365	49675345	49675345	Frame_Shift_Del	T	-	p.V377fs
LIHC	TCGA-DD-A1EG-01	TEAD2	ENST00000311227.2	chr19	49862691:49862756:49863100:49863338:49865589:49865639,49862691:49862756:49863100:49863338:49865629:49865698,	49863101	49863338	49863147	49863147	Frame_Shift_Del	G	-	p.P62fs
LIHC	TCGA-DD-A1EG-01	ALDH16A1	ENST00000433981.2,ENST00000540132.1,ENST00000593417.1,ENST00000293350.4	chr19	49964875:49965057:49965140:49965293:49965826:49966012,	49965141	49965293	49965151	49965151	Frame_Shift_Del	C	-	p.A257fs
LIHC	TCGA-DD-A1EG-01	RPS11	ENST00000602252.1,ENST00000601216.1	chr19	49999710:49999728:50000450:50000852:50001173:50001303,	50000451	50000852	50000488	50000488	Frame_Shift_Del	A	-	p.Q18fs
LIHC	TCGA-DD-A1EG-01	RPS11	ENST00000594493.1	chr19	49999710:49999728:50000429:50000582:50000776:50000787,	50000430	50000582	50000488	50000488	Frame_Shift_Del	A	-	p.Q18fs
LIHC	TCGA-DD-A1EG-01	RPS11	ENST00000596873.1,ENST00000270625.2	chr19	49999710:49999728:50000450:50000582:50000776:50000787,	50000451	50000582	50000488	50000488	Frame_Shift_Del	A	-	p.Q18fs
LIHC	TCGA-DD-A1EG-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156035	50156035	Frame_Shift_Del	C	-	p.P798fs
LIHC	TCGA-DD-A1EG-01	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165275	50165275	Frame_Shift_Del	C	-	p.G304fs
LIHC	TCGA-DD-A1EG-01	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165275	50165275	Frame_Shift_Del	C	-	p.G304fs
LIHC	TCGA-DD-A1EG-01	IRF3	ENST00000600453.1	chr19	50166677:50166771:50167930:50168103:50168928:50169037,50166677:50166771:50167930:50168103:50168887:50168962,50166677:50166771:50167930:50168103:50168715:50169100,	50167931	50168103	50167986	50167986	Frame_Shift_Del	G	-	p.P37fs
LIHC	TCGA-DD-A1EG-01	IRF3	ENST00000598108.1	chr19	50166677:50166771:50167930:50168207:50168891:50169036,	50167931	50168207	50167986	50167986	Frame_Shift_Del	G	-	p.P37fs
LIHC	TCGA-DD-A1EG-01	MED25	ENST00000312865.6	chr19	50333078:50333205:50333344:50333475:50333767:50333855,	50333345	50333475	50333452	50333452	Frame_Shift_Del	C	-	p.P267fs
LIHC	TCGA-DD-A1EG-01	MED25	ENST00000312865.6,ENST00000538643.1	chr19	50333767:50333855:50333950:50334144:50334589:50334718,	50333951	50334144	50333983	50333983	Frame_Shift_Del	C	-	p.P314fs
LIHC	TCGA-DD-A1EG-01	MED25	ENST00000312865.6,ENST00000538643.1	chr19	50333767:50333855:50333950:50334144:50334589:50334718,	50333951	50334144	50334055	50334055	Frame_Shift_Del	C	-	p.P340fs
LIHC	TCGA-DD-A1EG-01	MED25	ENST00000593767.1	chr19	50338983:50339202:50339482:50339663:50341836:50342073,	50339483	50339663	50339594	50339594	Frame_Shift_Del	C	-	p.P694fs
LIHC	TCGA-DD-A1EG-01	PNKP	ENST00000600910.1,ENST00000594661.1,ENST00000322344.3,ENST00000596014.1,ENST00000593946.1,ENST00000600573.1	chr19	50367580:50367660:50368383:50368683:50369655:50369702,	50368384	50368683	50368572	50368572	Frame_Shift_Del	G	-	p.L104fs
LIHC	TCGA-DD-A1EG-01	AKT1S1	ENST00000391832.3,ENST00000391835.1,ENST00000344175.5,ENST00000391831.1,ENST00000391834.2	chr19	50374803:50374973:50375068:50375146:50376173:50376559,	50375069	50375146	50375100	50375100	Frame_Shift_Del	G	-	p.P142fs
LIHC	TCGA-DD-A1EG-01	VRK3	ENST00000596814.1,ENST00000316763.3,ENST00000594090.1,ENST00000593919.1,ENST00000377011.2,ENST00000594948.1,ENST00000594092.1,ENST00000600284.1,ENST00000601341.1,ENST00000599538.1,ENST00000601912.1,ENST00000443401.2,ENST00000593912.1	chr19	50491628:50491749:50492895:50493028:50496116:50496167,	50492896	50493028	50492935	50492935	Frame_Shift_Del	C	-	p.D353fs
LIHC	TCGA-DD-A1EG-01	VRK3	ENST00000596814.1,ENST00000377011.2,ENST00000601341.1,ENST00000600137.1,ENST00000601912.1,ENST00000443401.2	chr19	50504046:50504111:50510825:50511083:50519280:50519420,	50510826	50511083	50510840	50510840	Frame_Shift_Del	C	-	p.G178fs
LIHC	TCGA-DD-A1EG-01	KCNC3	ENST00000474951.1,ENST00000391818.2,ENST00000376959.2	chr19	50815198:50818247:50819289:50819348:50823849:50824041,	50819290	50819348	50819292	50819292	Frame_Shift_Del	G	-	p.P79fs
LIHC	TCGA-DD-A1EG-01	NAPSA	ENST00000598915.1,ENST00000253719.2	chr19	50862862:50862904:50862996:50863119:50864197:50864382,	50862997	50863119	50863069	50863069	Frame_Shift_Del	G	-	p.P240fs
LIHC	TCGA-DD-A1EG-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926122	50926122	Frame_Shift_Del	C	-	p.T56fs
LIHC	TCGA-DD-A1EG-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926156	50926156	Frame_Shift_Del	T	-	p.A67fs
LIHC	TCGA-DD-A1EG-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926264	50926264	Frame_Shift_Del	T	-	p.P103fs
LIHC	TCGA-DD-A1EG-01	MYBPC2	ENST00000357701.5	chr19	50964798:50964958:50965156:50965293:50967602:50967789,	50965157	50965293	50965249	50965249	Frame_Shift_Del	G	-	p.G1062fs
LIHC	TCGA-DD-A1EG-01	ASPDH	ENST00000389208.4	chr19	51016183:51016268:51016528:51016673:51017028:51017142,	51016529	51016673	51016612	51016612	Frame_Shift_Del	A	-	p.F38fs
LIHC	TCGA-DD-A1EG-01	KLK1	ENST00000593325.1,ENST00000448701.2	chr19	51323409:51323699:51324967:51326031:51326132:51326208,	51324968	51326031	51325019	51325019	Frame_Shift_Del	C	-	p.G52fs
LIHC	TCGA-DD-A1EG-01	KLK1	ENST00000301420.2	chr19	51323491:51323699:51324967:51325127:51326958:51327040,	51324968	51325127	51325019	51325019	Frame_Shift_Del	C	-	p.G52fs
LIHC	TCGA-DD-A1EG-01	KLK7	ENST00000597707.1	chr19	51483541:51483743:51485022:51485170:51485582:51485713,51483541:51483743:51485022:51485170:51487106:51487294,	51485023	51485170	51485051	51485051	Frame_Shift_Del	C	-	p.V65fs
LIHC	TCGA-DD-A1EG-01	KLK10	ENST00000601467.1	chr19	51519265:51519412:51520365:51520546:51522298:51522395,51519252:51519412:51520365:51520546:51521710:51522105,	51520366	51520546	51520519	51520519	Frame_Shift_Del	T	-	p.N39fs
LIHC	TCGA-DD-A1EG-01	KLK11	ENST00000391804.3	chr19	51526435:51526484:51527300:51527637:51527889:51528050,	51527301	51527637	51527449	51527449	Frame_Shift_Del	T	-	p.K137fs
LIHC	TCGA-DD-A1EG-01	KLK11	ENST00000319756.3	chr19	51526435:51526484:51527300:51527566:51527893:51528050,51526435:51526484:51527300:51527566:51527889:51528050,	51527301	51527566	51527449	51527449	Frame_Shift_Del	T	-	p.K137fs
LIHC	TCGA-DD-A1EG-01	KLK12	ENST00000530943.2,ENST00000250352.11,ENST00000529888.1,ENST00000526824.1	chr19	51532597:51532713:51534043:51534177:51537235:51537395,	51534044	51534177	51534120	51534120	Frame_Shift_Del	C	-	p.C62fs
LIHC	TCGA-DD-A1EG-01	SIGLEC10	ENST00000339313.5,ENST00000356298.5,ENST00000357375.4,ENST00000439889.2	chr19	51917675:51917769:51918077:51918362:51918434:51918613,	51918078	51918362	51918277	51918277	Frame_Shift_Del	G	-	p.P472fs
LIHC	TCGA-DD-A1EG-01	SIGLEC10	ENST00000339313.5,ENST00000436984.2,ENST00000441969.3,ENST00000353836.5,ENST00000356298.5,ENST00000432469.2,ENST00000439889.2	chr19	51918821:51918869:51919151:51919421:51919563:51919611,	51919152	51919421	51919237	51919237	Frame_Shift_Del	C	-	p.V313fs
LIHC	TCGA-DD-A1EG-01	SIGLEC12	ENST00000291707.3,ENST00000598614.1,ENST00000596742.1	chr19	52000133:52000230:52000602:52000699:52001271:52001541,	52000603	52000699	52000654	52000654	Frame_Shift_Del	C	-	p.G484fs
LIHC	TCGA-DD-A1EG-01	PPP2R1A	ENST00000462990.1,ENST00000322088.6,ENST00000444322.2	chr19	52719781:52719916:52722943:52723117:52723441:52723502,	52722944	52723117	52722957	52722957	Frame_Shift_Del	G	-	p.R381fs
LIHC	TCGA-DD-A1EG-01	ZNF480	ENST00000335090.6	chr19	52817405:52817532:52819086:52819215:52824831:52824900,52803646:52803737:52819086:52819215:52824831:52824900,	52819087	52819215	52819135	52819135	Frame_Shift_Del	G	-	p.R83fs
LIHC	TCGA-DD-A1EG-01	NLRP12	ENST00000535162.1,ENST00000345770.5,ENST00000492915.1,ENST00000391775.3,ENST00000324134.6,ENST00000391773.1	chr19	54304480:54304651:54307205:54307376:54308533:54308704,	54307206	54307376	54307230	54307230	Frame_Shift_Del	G	-	p.P854fs
LIHC	TCGA-DD-A1EG-01	NDUFA3	ENST00000451517.1	chr19	54606176:54606196:54606421:54606496:54609240:54609318,54606176:54606196:54606421:54606496:54608903:54609010,	54606422	54606496	54606487	54606487	Frame_Shift_Del	G	-	p.G27fs
LIHC	TCGA-DD-A1EG-01	LILRB2	ENST00000314446.5,ENST00000391748.1	chr19	54781403:54781454:54781742:54781793:54782113:54782398,54781403:54781451:54781742:54781793:54782113:54782398,	54781743	54781793	54781769	54781769	Frame_Shift_Del	G	-	p.P429fs
LIHC	TCGA-DD-A1EG-01	TTYH1	ENST00000425969.1	chr19	54926780:54926852:54930301:54930480:54932450:54932517,54926780:54926852:54930301:54930480:54933363:54933422,	54930302	54930480	54930421	54930421	Frame_Shift_Del	C	-	p.I82fs
LIHC	TCGA-DD-A1EG-01	TTYH1	ENST00000376531.3,ENST00000301194.4,ENST00000376530.3,ENST00000391739.3,ENST00000476757.1,ENST00000487134.1,ENST00000472198.1	chr19	54933372:54933584:54937849:54937945:54940484:54940531,	54937850	54937945	54937910	54937910	Frame_Shift_Del	G	-	p.L233fs
LIHC	TCGA-DD-A1EG-01	RDH13	ENST00000592573.1,ENST00000587721.1,ENST00000415061.3,ENST00000291892.6,ENST00000396247.3	chr19	55559696:55559909:55560026:55560131:55568020:55568176,	55560027	55560131	55560078	55560078	Frame_Shift_Del	G	-	p.H61fs
LIHC	TCGA-DD-A1EG-01	PPP1R12C	ENST00000435544.2,ENST00000263433.3,ENST00000376393.2,ENST00000592993.1	chr19	55606028:55606166:55606658:55606726:55606812:55606968,	55606659	55606726	55606695	55606695	Frame_Shift_Del	G	-	p.P473fs
LIHC	TCGA-DD-A1EG-01	DNAAF3	ENST00000534214.1,ENST00000528412.1	chr19	55676737:55676831:55677149:55677368:55677696:55677785,	55677150	55677368	55677268	55677268	Frame_Shift_Del	C	-	p.R130fs
LIHC	TCGA-DD-A1EG-01	DNAAF3	ENST00000526003.1,ENST00000391720.4,ENST00000524407.2	chr19	55676737:55676831:55677225:55677368:55677696:55677785,	55677226	55677368	55677268	55677268	Frame_Shift_Del	C	-	p.R130fs
LIHC	TCGA-DD-A1EG-01	DNAAF3	ENST00000527223.2	chr19	55676737:55676831:55677225:55677431:55677696:55677785,	55677226	55677431	55677268	55677268	Frame_Shift_Del	C	-	p.R130fs
LIHC	TCGA-DD-A1EG-01	PTPRH	ENST00000376350.3,ENST00000588559.1,ENST00000263434.5	chr19	55710010:55710280:55711603:55711870:55713423:55713690,	55711604	55711870	55711852	55711852	Frame_Shift_Del	T	-	p.N391fs
LIHC	TCGA-DD-A1EG-01	PTPRH	ENST00000376350.3,ENST00000588559.1	chr19	55713423:55713690:55715149:55715416:55716693:55716960,	55715150	55715416	55715343	55715343	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A1EG-01	PPP6R1	ENST00000412770.2,ENST00000587457.1,ENST00000587283.1	chr19	55741857:55741899:55741980:55742052:55742141:55742252,	55741981	55742052	55742008	55742008	Frame_Shift_Del	G	-	p.P872fs
LIHC	TCGA-DD-A1EG-01	PPP6R1	ENST00000591323.1,ENST00000412770.2,ENST00000587283.1	chr19	55751603:55751668:55752312:55752447:55752606:55752759,	55752313	55752447	55752316	55752316	Frame_Shift_Del	T	-	p.K431fs
LIHC	TCGA-DD-A1EG-01	IL11	ENST00000585513.1	chr19	55879850:55879937:55880136:55880309:55881671:55881741,	55880137	55880309	55880231	55880231	Frame_Shift_Del	G	-	p.P29fs
LIHC	TCGA-DD-A1EG-01	SSC5D	ENST00000389623.6,ENST00000588254.1,ENST00000587166.1	chr19	56000720:56001029:56001248:56001362:56001664:56001775,	56001249	56001362	56001287	56001287	Frame_Shift_Del	C	-	p.P134fs
LIHC	TCGA-DD-A1EG-01	EPN1	ENST00000411543.2	chr19	56188411:56188584:56188915:56189100:56189892:56190062,	56188916	56189100	56189004	56189004	Frame_Shift_Del	G	-	p.G46fs
LIHC	TCGA-DD-A1EG-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56201232:56201316:56203119:56203423:56204051:56204162,	56203120	56203423	56203184	56203184	Frame_Shift_Del	G	-	p.W362fs
LIHC	TCGA-DD-A1EG-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56201232:56201316:56203119:56203423:56204051:56204162,	56203120	56203423	56203198	56203198	Frame_Shift_Del	C	-	p.P367fs
LIHC	TCGA-DD-A1EG-01	NLRP11	ENST00000360133.3,ENST00000443188.1,ENST00000593244.1,ENST00000589093.1	chr19	56321601:56321704:56329269:56329602:56343328:56343353,	56329270	56329602	56329394	56329394	Frame_Shift_Del	T	-	p.K49fs
LIHC	TCGA-DD-A1EG-01	ZNF550	ENST00000457177.1	chr19	58053207:58054611:58057824:58059361:58063994:58064090,	58057825	58059361	58058940	58058940	Frame_Shift_Del	A	-	p.V192fs
LIHC	TCGA-DD-A1EG-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438999	58438999	Frame_Shift_Del	C	-	p.E184fs
LIHC	TCGA-DD-A1EG-01	ZNF274	ENST00000597818.1,ENST00000345813.3,ENST00000599438.1,ENST00000326804.4,ENST00000424679.2	chr19	58718363:58718568:58721326:58721439:58722925:58723052,	58721327	58721439	58721395	58721395	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-DD-A1EG-01	ZNF274	ENST00000597818.1,ENST00000345813.3,ENST00000599438.1,ENST00000326804.4,ENST00000424679.2	chr19	58718363:58718568:58721326:58721439:58722925:58723052,	58721327	58721439	58721400	58721400	Frame_Shift_Del	G	-	p.Q270fs
LIHC	TCGA-DD-A1EG-01	RBCK1	ENST00000356286.5,ENST00000353660.3	chr20	400201:400375:401514:401675:402770:402882,	401515	401675	401648	401648	Frame_Shift_Del	T	-	p.L297fs
LIHC	TCGA-DD-A1EG-01	RBCK1	ENST00000382214.3	chr20	400201:400375:401514:401650:402770:402882,	401515	401650	401648	401648	Frame_Shift_Del	T	-	p.L297fs
LIHC	TCGA-DD-A1EG-01	TBC1D20	ENST00000354200.4,ENST00000494633.1,ENST00000461304.1	chr20	425693:425774:428532:428718:442979:443175,	428533	428718	428697	428697	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-DD-A1EG-01	TBC1D20	ENST00000354200.4,ENST00000494633.1,ENST00000461304.1	chr20	425693:425774:428532:428718:442979:443175,	428533	428718	428704	428704	Frame_Shift_Del	T	-	p.R29fs
LIHC	TCGA-DD-A1EG-01	PSMF1	ENST00000246015.4,ENST00000479715.1,ENST00000381898.4,ENST00000484891.1,ENST00000333082.3,ENST00000335877.6	chr20	1115820:1115949:1143773:1143827:1144961:1145041,	1143774	1143827	1143781	1143781	Frame_Shift_Del	C	-	p.P187fs
LIHC	TCGA-DD-A1EG-01	PSMF1	ENST00000246015.4,ENST00000479715.1,ENST00000381898.4,ENST00000484891.1,ENST00000333082.3,ENST00000335877.6	chr20	1115820:1115949:1143773:1143827:1144961:1145041,	1143774	1143827	1143802	1143802	Frame_Shift_Del	G	-	p.G195fs
LIHC	TCGA-DD-A1EG-01	NSFL1C	ENST00000555568.1,ENST00000350991.4,ENST00000381653.5,ENST00000461211.1,ENST00000470376.1,ENST00000381658.4,ENST00000216879.4,ENST00000476071.1,ENST00000555944.1,ENST00000553571.1	chr20	1433764:1433785:1434857:1434950:1435611:1435682,	1434858	1434950	1434880	1434880	Frame_Shift_Del	T	-	p.K172fs
LIHC	TCGA-DD-A1EG-01	NSFL1C	ENST00000350991.4,ENST00000381653.5,ENST00000487086.1,ENST00000216879.4,ENST00000476071.1,ENST00000353088.2,ENST00000489203.2	chr20	1438844:1438919:1444973:1445071:1447364:1447467,	1444974	1445071	1445003	1445003	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-DD-A1EG-01	STK35	ENST00000246032.3,ENST00000381482.3	chr20	2083553:2084011:2097311:2098061:2124429:2124538,	2097312	2098061	2097610	2097610	Frame_Shift_Del	G	-	p.E397fs
LIHC	TCGA-DD-A1EG-01	TGM3	ENST00000381458.5	chr20	2308765:2309011:2312647:2312956:2315761:2315919,	2312648	2312956	2312685	2312685	Frame_Shift_Del	G	-	p.L457fs
LIHC	TCGA-DD-A1EG-01	IDH3B	ENST00000380851.5,ENST00000488299.1,ENST00000491065.1,ENST00000462967.1,ENST00000474315.1,ENST00000380843.4	chr20	2644091:2644212:2644305:2644404:2644570:2644651,	2644306	2644404	2644342	2644342	Frame_Shift_Del	C	-	p.G60fs
LIHC	TCGA-DD-A1EG-01	PCED1A	ENST00000356872.3,ENST00000360652.2	chr20	2815959:2816355:2816684:2816960:2818877:2818998,	2816685	2816960	2816762	2816762	Frame_Shift_Del	A	-	p.F347fs
LIHC	TCGA-DD-A1EG-01	PCED1A	ENST00000356872.3,ENST00000360652.2	chr20	2815959:2816355:2816684:2816960:2818877:2818998,	2816685	2816960	2816768	2816768	Frame_Shift_Del	G	-	p.P345fs
LIHC	TCGA-DD-A1EG-01	PTPRA	ENST00000425918.2,ENST00000399903.2,ENST00000358719.4,ENST00000356147.3,ENST00000380393.3,ENST00000318266.5,ENST00000216877.6	chr20	2968983:2969120:2985701:2985792:2987989:2988066,	2985702	2985792	2985763	2985763	Frame_Shift_Del	A	-	p.E258fs
LIHC	TCGA-DD-A1EG-01	ITPA	ENST00000609835.1	chr20	3190170:3190263:3193903:3194029:3194630:3194704,	3193904	3194029	3193978	3193978	Frame_Shift_Del	G	-	p.Q46fs
LIHC	TCGA-DD-A1EG-01	ITPA	ENST00000380113.3,ENST00000455664.2	chr20	3193814:3193872:3193964:3194029:3194630:3194704,	3193965	3194029	3193978	3193978	Frame_Shift_Del	G	-	p.Q46fs
LIHC	TCGA-DD-A1EG-01	ITPA	ENST00000460676.1	chr20	3193814:3193872:3193964:3194072:3194630:3194704,	3193965	3194072	3193978	3193978	Frame_Shift_Del	G	-	p.Q46fs
LIHC	TCGA-DD-A1EG-01	ADAM33	ENST00000350009.2,ENST00000356518.2,ENST00000466620.1,ENST00000379861.4	chr20	3652523:3652632:3652780:3652976:3653183:3653273,	3652781	3652976	3652888	3652888	Frame_Shift_Del	G	-	p.P497fs
LIHC	TCGA-DD-A1EG-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3677232:3677535:3677731:3677989:3678444:3678780,	3677732	3677989	3677846	3677846	Frame_Shift_Del	G	-	p.L756fs
LIHC	TCGA-DD-A1EG-01	CDC25B	ENST00000340833.4,ENST00000480816.1,ENST00000439880.2,ENST00000245960.5,ENST00000344256.6,ENST00000467519.1	chr20	3781900:3782035:3782368:3782449:3782570:3782661,	3782369	3782449	3782412	3782412	Frame_Shift_Del	C	-	p.A295fs
LIHC	TCGA-DD-A1EG-01	MAVS	ENST00000416600.2	chr20	3838281:3838456:3841978:3842151:3842900:3843060,3835271:3835388:3841978:3842151:3842900:3843060,	3841979	3842151	3842041	3842041	Frame_Shift_Del	C	-	p.P120fs
LIHC	TCGA-DD-A1EG-01	PANK2	ENST00000464452.1,ENST00000495692.1,ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3891223:3891477:3893104:3893281:3897573:3897697,	3893105	3893281	3893120	3893120	Frame_Shift_Del	T	-	p.T126fs
LIHC	TCGA-DD-A1EG-01	SLC23A2	ENST00000423430.1,ENST00000338244.1,ENST00000379333.1,ENST00000424750.2	chr20	4840012:4840030:4842593:4842731:4843423:4843553,	4842594	4842731	4842651	4842651	Frame_Shift_Del	A	-	p.S523fs
LIHC	TCGA-DD-A1EG-01	SLC23A2	ENST00000468355.1,ENST00000338244.1,ENST00000379333.1,ENST00000424750.2	chr20	4880200:4880358:4883087:4883204:4893525:4893624,	4883088	4883204	4883141	4883141	Frame_Shift_Del	A	-	p.Y91fs
LIHC	TCGA-DD-A1EG-01	PCNA	ENST00000379160.3	chr20	5099255:5099323:5099414:5099512:5100223:5100560,	5099415	5099512	5099460	5099460	Frame_Shift_Del	C	-	p.A92fs
LIHC	TCGA-DD-A1EG-01	GPCPD1	ENST00000418646.1,ENST00000379019.4,ENST00000481038.1	chr20	5527986:5528496:5538590:5538751:5539329:5539465,	5538591	5538751	5538692	5538692	Frame_Shift_Del	T	-	p.K576fs
LIHC	TCGA-DD-A1EG-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904345	5904345	Frame_Shift_Del	G	-	p.G519fs
LIHC	TCGA-DD-A1EG-01	CRLS1	ENST00000452938.1	chr20	5986795:5987198:5990420:5990558:5996006:5996136,	5990421	5990558	5990476	5990476	Frame_Shift_Del	C	-	p.A121fs
LIHC	TCGA-DD-A1EG-01	CRLS1	ENST00000452938.1	chr20	5986795:5987198:5990420:5990558:5996006:5996136,	5990421	5990558	5990530	5990530	Frame_Shift_Del	T	-	p.V139fs
LIHC	TCGA-DD-A1EG-01	FERMT1	ENST00000217289.4,ENST00000478194.1,ENST00000536936.1	chr20	6056668:6057993:6060082:6060224:6064686:6064811,	6060083	6060224	6060206	6060206	Frame_Shift_Del	T	-	p.K579fs
LIHC	TCGA-DD-A1EG-01	FERMT1	ENST00000217289.4,ENST00000536936.1	chr20	6068455:6068530:6069611:6069736:6075585:6075632,	6069612	6069736	6069659	6069659	Frame_Shift_Del	T	-	p.N406fs
LIHC	TCGA-DD-A1EG-01	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438083	9438083	Frame_Shift_Del	A	-	p.K996fs
LIHC	TCGA-DD-A1EG-01	ANKEF1	ENST00000378380.3	chr20	10016226:10016290:10018905:10019295:10023769:10023864,10015764:10015981:10018905:10019295:10023769:10023864,	10018906	10019295	10019093	10019093	Frame_Shift_Del	A	-	p.G48fs
LIHC	TCGA-DD-A1EG-01	ANKEF1	ENST00000488991.1,ENST00000378392.1,ENST00000378380.3	chr20	10023769:10023969:10025041:10025191:10026221:10026345,	10025042	10025191	10025081	10025081	Frame_Shift_Del	G	-	p.G196fs
LIHC	TCGA-DD-A1EG-01	ANKEF1	ENST00000488991.1,ENST00000378392.1,ENST00000378380.3	chr20	10023769:10023969:10025041:10025191:10026221:10026345,	10025042	10025191	10025183	10025183	Frame_Shift_Del	T	-	p.F231fs
LIHC	TCGA-DD-A1EG-01	MKKS	ENST00000347364.3,ENST00000399054.2	chr20	10389275:10389451:10393177:10394579:10401175:10401406,	10393178	10394579	10393947	10393947	Frame_Shift_Del	G	-	p.P72fs
LIHC	TCGA-DD-A1EG-01	SPTLC3	ENST00000399002.2	chr20	13090758:13090864:13098152:13098372:13107237:13107364,	13098153	13098372	13098195	13098195	Frame_Shift_Del	A	-	p.L325fs
LIHC	TCGA-DD-A1EG-01	NDUFAF5	ENST00000485738.1	chr20	13779106:13779146:13782153:13782329:13789487:13789537,	13782154	13782329	13782246	13782246	Frame_Shift_Del	T	-	p.F212fs
LIHC	TCGA-DD-A1EG-01	NDUFAF5	ENST00000476536.1,ENST00000481249.1,ENST00000378106.5,ENST00000464269.1,ENST00000463598.1,ENST00000378081.5,ENST00000475968.1,ENST00000479716.1	chr20	13779106:13779146:13782131:13782329:13789487:13789537,	13782132	13782329	13782246	13782246	Frame_Shift_Del	T	-	p.F212fs
LIHC	TCGA-DD-A1EG-01	SEL1L2	ENST00000486903.1,ENST00000378072.5	chr20	13845812:13845887:13847347:13847496:13850148:13850236,	13847348	13847496	13847449	13847449	Frame_Shift_Del	A	-	p.Y435fs
LIHC	TCGA-DD-A1EG-01	MACROD2	ENST00000477147.1,ENST00000494602.1,ENST00000490428.1,ENST00000217246.4,ENST00000310348.4	chr20	13982933:13983050:14066266:14066374:14474124:14474154,	14066267	14066374	14066312	14066312	Frame_Shift_Del	A	-	p.E70fs
LIHC	TCGA-DD-A1EG-01	PCSK2	ENST00000262545.2,ENST00000536609.1,ENST00000377899.1	chr20	17436992:17437093:17445970:17446198:17462228:17462436,	17445971	17446198	17446065	17446065	Frame_Shift_Del	G	-	p.G433fs
LIHC	TCGA-DD-A1EG-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17617221:17617374:17622441:17622564:17623623:17623772,	17622442	17622564	17622505	17622505	Frame_Shift_Del	T	-	p.K707fs
LIHC	TCGA-DD-A1EG-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639452	17639452	Frame_Shift_Del	C	-	p.G567fs
LIHC	TCGA-DD-A1EG-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639820	17639820	Frame_Shift_Del	C	-	p.A445fs
LIHC	TCGA-DD-A1EG-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640503	17640503	Frame_Shift_Del	T	-	p.N217fs
LIHC	TCGA-DD-A1EG-01	MGME1	ENST00000377709.1,ENST00000377710.5	chr20	17950699:17951013:17968808:17968941:17970581:17970874,17956341:17956546:17968808:17968941:17970581:17970874,	17968809	17968941	17968846	17968846	Frame_Shift_Del	A	-	p.K257fs
LIHC	TCGA-DD-A1EG-01	OVOL2	ENST00000483661.1,ENST00000278780.6	chr20	18005242:18005596:18022177:18022367:18037300:18037521,	18022178	18022367	18022253	18022253	Frame_Shift_Del	T	-	p.R146fs
LIHC	TCGA-DD-A1EG-01	DZANK1	ENST00000358866.6,ENST00000377630.5,ENST00000262547.5,ENST00000329494.5,ENST00000609267.1,ENST00000357236.4,ENST00000608192.1,ENST00000460891.1	chr20	18435890:18436005:18440796:18440950:18445893:18445986,	18440797	18440950	18440872	18440872	Frame_Shift_Del	T	-	p.N64fs
LIHC	TCGA-DD-A1EG-01	POLR3F	ENST00000377603.4,ENST00000489753.1,ENST00000462997.1	chr20	18455718:18455831:18460681:18460825:18461045:18461153,	18460682	18460825	18460765	18460765	Frame_Shift_Del	T	-	p.D171fs
LIHC	TCGA-DD-A1EG-01	POLR3F	ENST00000377603.4,ENST00000489753.1,ENST00000462997.1	chr20	18455718:18455831:18460681:18460825:18461045:18461153,	18460682	18460825	18460813	18460813	Frame_Shift_Del	C	-	p.F187fs
LIHC	TCGA-DD-A1EG-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19955468	19955468	Frame_Shift_Del	G	-	p.G316fs
LIHC	TCGA-DD-A1EG-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956092	19956092	Frame_Shift_Del	C	-	p.P525fs
LIHC	TCGA-DD-A1EG-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956394	19956394	Frame_Shift_Del	C	-	p.D624fs
LIHC	TCGA-DD-A1EG-01	NAA20	ENST00000310450.4	chr20	20006320:20006411:20007427:20007563:20013151:20013297,20006320:20006411:20007427:20007563:20013745:20014273,	20007428	20007563	20007505	20007505	Frame_Shift_Del	T	-	p.F71fs
LIHC	TCGA-DD-A1EG-01	RALGAPA2	ENST00000202677.7	chr20	20634173:20634231:20656879:20656932:20661334:20661445,	20656880	20656932	20656915	20656915	Frame_Shift_Del	T	-	p.R79fs
LIHC	TCGA-DD-A1EG-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21362631:21362695:21367505:21367644:21369910:21370263,	21367506	21367644	21367553	21367553	Frame_Shift_Del	C	-	p.T899fs
LIHC	TCGA-DD-A1EG-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21362631:21362695:21367505:21367644:21369910:21370263,	21367506	21367644	21367597	21367597	Frame_Shift_Del	G	-	p.G914fs
LIHC	TCGA-DD-A1EG-01	FOXA2	ENST00000377115.4	chr20	22561642:22563792:22564829:22564899:22565912:22566093,	22564830	22564899	22564872	22564872	Frame_Shift_Del	C	-	p.G9fs
LIHC	TCGA-DD-A1EG-01	GGTLC1	ENST00000286890.4,ENST00000335694.4,ENST00000278765.4	chr20	23965689:23965999:23966303:23966417:23966498:23966611,	23966304	23966417	23966360	23966360	Frame_Shift_Del	G	-	p.R159fs
LIHC	TCGA-DD-A1EG-01	APMAP	ENST00000217456.2	chr20	24945010:24945034:24949527:24949720:24950161:24950296,24944529:24944658:24949527:24949720:24950161:24950296,	24949528	24949720	24949624	24949624	Frame_Shift_Del	C	-	p.G315fs
LIHC	TCGA-DD-A1EG-01	APMAP	ENST00000451442.1,ENST00000217456.2,ENST00000447138.1	chr20	24952095:24952212:24954280:24954373:24959402:24959518,	24954281	24954373	24954286	24954286	Frame_Shift_Del	G	-	p.P139fs
LIHC	TCGA-DD-A1EG-01	APMAP	ENST00000451442.1,ENST00000217456.2,ENST00000447138.1	chr20	24954280:24954373:24959402:24959518:24964538:24964655,	24959403	24959518	24959441	24959441	Frame_Shift_Del	T	-	p.N97fs
LIHC	TCGA-DD-A1EG-01	PYGB	ENST00000216962.4	chr20	25257879:25257962:25258954:25259098:25259692:25259785,	25258955	25259098	25259029	25259029	Frame_Shift_Del	C	-	p.R311fs
LIHC	TCGA-DD-A1EG-01	PYGB	ENST00000216962.4	chr20	25264739:25264887:25269060:25269119:25271116:25271258,	25269061	25269119	25269111	25269111	Frame_Shift_Del	G	-	p.G608fs
LIHC	TCGA-DD-A1EG-01	NINL	ENST00000278886.6	chr20	25450626:25450731:25456678:25457725:25459558:25459663,	25456679	25457725	25456782	25456782	Frame_Shift_Del	T	-	p.I1049fs
LIHC	TCGA-DD-A1EG-01	NINL	ENST00000278886.6	chr20	25450626:25450731:25456678:25457725:25459558:25459663,	25456679	25457725	25457034	25457034	Frame_Shift_Del	C	-	p.A966fs
LIHC	TCGA-DD-A1EG-01	HM13	ENST00000376127.3,ENST00000469126.1,ENST00000335574.5,ENST00000340852.5,ENST00000344042.5,ENST00000398174.3	chr20	30115286:30115385:30132749:30132838:30137866:30137924,30125981:30126162:30132749:30132838:30136831:30136917,30125997:30126064:30132749:30132838:30136831:30136917,	30132750	30132838	30132781	30132781	Frame_Shift_Del	T	-	p.F133fs
LIHC	TCGA-DD-A1EG-01	HM13	ENST00000469097.1	chr20	30147413:30147450:30149436:30149539:30156922:30156977,	30149437	30149539	30149474	30149474	Frame_Shift_Del	T	-	p.F295fs
LIHC	TCGA-DD-A1EG-01	HM13	ENST00000468559.1	chr20	30147413:30147450:30149436:30149543:30156922:30157370,	30149437	30149543	30149474	30149474	Frame_Shift_Del	T	-	p.F295fs
LIHC	TCGA-DD-A1EG-01	DUSP15	ENST00000398084.2,ENST00000339738.5,ENST00000375966.4,ENST00000486996.1,ENST00000398083.1,ENST00000278979.3,ENST00000459848.1	chr20	30450389:30450545:30451709:30451784:30452755:30452805,	30451710	30451784	30451727	30451727	Frame_Shift_Del	C	-	p.G79fs
LIHC	TCGA-DD-A1EG-01	COMMD7	ENST00000278980.6,ENST00000446419.2,ENST00000610160.1	chr20	31291824:31291873:31292241:31292291:31292615:31292706,	31292242	31292291	31292246	31292246	Frame_Shift_Del	A	-	p.L157fs
LIHC	TCGA-DD-A1EG-01	BPIFB6	ENST00000542375.1,ENST00000349552.1	chr20	31624250:31624342:31625367:31625544:31626714:31626768,	31625368	31625544	31625518	31625518	Frame_Shift_Del	T	-	p.F274fs
LIHC	TCGA-DD-A1EG-01	BPIFA3	ENST00000375454.3,ENST00000471233.1,ENST00000490499.1	chr20	31811616:31811767:31812160:31812268:31812903:31813053,	31812161	31812268	31812261	31812261	Frame_Shift_Del	T	-	p.L127fs
LIHC	TCGA-DD-A1EG-01	BPIFA1	ENST00000375422.2,ENST00000354297.4,ENST00000375413.4	chr20	31825861:31826020:31827608:31827716:31828038:31828191,	31827609	31827716	31827624	31827624	Frame_Shift_Del	C	-	p.D112fs
LIHC	TCGA-DD-A1EG-01	CDK5RAP1	ENST00000427097.1,ENST00000461710.1,ENST00000473997.1,ENST00000482967.1,ENST00000339269.5,ENST00000346416.2,ENST00000357886.4,ENST00000496381.1	chr20	31954664:31954814:31958304:31958435:31960447:31960503,	31958305	31958435	31958330	31958330	Frame_Shift_Del	A	-	p.F470fs
LIHC	TCGA-DD-A1EG-01	CDK5RAP1	ENST00000477105.1,ENST00000461356.1,ENST00000473997.1,ENST00000339269.5,ENST00000488723.1,ENST00000346416.2,ENST00000357886.4,ENST00000544843.1	chr20	31973455:31973576:31975128:31975339:31979947:31980048,	31975129	31975339	31975292	31975292	Frame_Shift_Del	T	-	p.M198fs
LIHC	TCGA-DD-A1EG-01	CBFA2T2	ENST00000492345.1,ENST00000346541.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32210920:32211102:32212569:32212823:32216155:32216241,	32212570	32212823	32212688	32212688	Frame_Shift_Del	C	-	p.P280fs
LIHC	TCGA-DD-A1EG-01	PXMP4	ENST00000217398.3	chr20	32295294:32295775:32298360:32298579:32302479:32302542,	32298361	32298579	32298465	32298465	Frame_Shift_Del	G	-	p.L91fs
LIHC	TCGA-DD-A1EG-01	PXMP4	ENST00000409299.3	chr20	32295294:32295775:32298360:32298559:32302479:32302542,	32298361	32298559	32298465	32298465	Frame_Shift_Del	G	-	p.L91fs
LIHC	TCGA-DD-A1EG-01	ZNF341	ENST00000497876.1,ENST00000342427.2,ENST00000375200.1	chr20	32357898:32358098:32369096:32369193:32371537:32371670,	32369097	32369193	32369135	32369135	Frame_Shift_Del	C	-	p.A554fs
LIHC	TCGA-DD-A1EG-01	RALY	ENST00000375114.3,ENST00000246194.3	chr20	32664507:32664621:32664833:32665051:32666310:32666351,	32664834	32665051	32664985	32664985	Frame_Shift_Del	G	-	p.Q254fs
LIHC	TCGA-DD-A1EG-01	ITCH	ENST00000374864.4,ENST00000262650.6,ENST00000486883.1	chr20	32981596:32981687:32996456:32996598:33000320:33000445,	32996457	32996598	32996550	32996550	Frame_Shift_Del	A	-	p.E55fs
LIHC	TCGA-DD-A1EG-01	PIGU	ENST00000438215.1,ENST00000374820.2,ENST00000217446.3	chr20	33148706:33148783:33162907:33163050:33169351:33169476,	33162908	33163050	33162940	33162940	Frame_Shift_Del	A	-	p.Y368fs
LIHC	TCGA-DD-A1EG-01	PIGU	ENST00000452740.2,ENST00000462389.1,ENST00000217446.3	chr20	33231967:33232030:33233078:33233138:33244983:33245039,	33233079	33233138	33233110	33233110	Frame_Shift_Del	A	-	p.F75fs
LIHC	TCGA-DD-A1EG-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329537	33329537	Frame_Shift_Del	G	-	p.P1508fs
LIHC	TCGA-DD-A1EG-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329926	33329926	Frame_Shift_Del	G	-	p.P1378fs
LIHC	TCGA-DD-A1EG-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33330161	33330161	Frame_Shift_Del	G	-	p.P1300fs
LIHC	TCGA-DD-A1EG-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2,ENST00000451813.2	chr20	33622925:33623111:33632307:33632515:33637668:33637793,	33632308	33632515	33632364	33632364	Frame_Shift_Del	T	-	p.N270fs
LIHC	TCGA-DD-A1EG-01	EIF6	ENST00000415116.1	chr20	33867876:33867921:33871978:33872295:33872528:33872573,33868500:33868632:33871978:33872295:33872528:33872573,	33871979	33872295	33872100	33872100	Frame_Shift_Del	G	-	p.P64fs
LIHC	TCGA-DD-A1EG-01	EIF6	ENST00000415116.1	chr20	33867876:33867921:33871978:33872295:33872528:33872573,33868500:33868632:33871978:33872295:33872528:33872573,	33871979	33872295	33872177	33872177	Frame_Shift_Del	G	-	p.G39fs
LIHC	TCGA-DD-A1EG-01	EIF6	ENST00000415116.1	chr20	33867876:33867921:33871978:33872295:33872528:33872573,33868500:33868632:33871978:33872295:33872528:33872573,	33871979	33872295	33872229	33872229	Frame_Shift_Del	T	-	p.N21fs
LIHC	TCGA-DD-A1EG-01	EIF6	ENST00000447927.2,ENST00000374450.3	chr20	33871986:33872064:33872183:33872295:33872528:33872573,	33872184	33872295	33872229	33872229	Frame_Shift_Del	T	-	p.N21fs
LIHC	TCGA-DD-A1EG-01	CEP250	ENST00000461386.1,ENST00000342580.4,ENST00000397527.1	chr20	34055128:34055380:34057714:34057811:34059874:34059955,	34057715	34057811	34057771	34057771	Frame_Shift_Del	A	-	p.E303fs
LIHC	TCGA-DD-A1EG-01	ERGIC3	ENST00000496172.1,ENST00000482338.1,ENST00000357394.4,ENST00000447986.1,ENST00000416206.1,ENST00000413587.1,ENST00000348547.2,ENST00000279052.6,ENST00000465298.1	chr20	34142828:34142846:34143803:34143900:34143977:34144033,	34143804	34143900	34143840	34143840	Frame_Shift_Del	G	-	p.G252fs
LIHC	TCGA-DD-A1EG-01	ERGIC3	ENST00000357394.4,ENST00000447986.1,ENST00000416206.1,ENST00000348547.2,ENST00000279052.6	chr20	34143977:34144042:34144743:34144880:34144964:34144987,	34144744	34144880	34144762	34144762	Frame_Shift_Del	T	-	p.F300fs
LIHC	TCGA-DD-A1EG-01	ERGIC3	ENST00000451605.1	chr20	34143977:34144042:34144725:34144880:34144964:34144987,	34144726	34144880	34144762	34144762	Frame_Shift_Del	T	-	p.F300fs
LIHC	TCGA-DD-A1EG-01	ERGIC3	ENST00000442139.1	chr20	34143977:34144042:34144647:34144880:34144964:34144987,	34144648	34144880	34144762	34144762	Frame_Shift_Del	T	-	p.F300fs
LIHC	TCGA-DD-A1EG-01	NFS1	ENST00000374092.4,ENST00000541387.1,ENST00000374085.1,ENST00000397425.1,ENST00000489163.1,ENST00000540053.1	chr20	34262433:34262539:34262966:34263124:34268658:34268793,	34262967	34263124	34263006	34263006	Frame_Shift_Del	C	-	p.G303fs
LIHC	TCGA-DD-A1EG-01	NFS1	ENST00000374092.4,ENST00000541387.1,ENST00000374085.1,ENST00000397425.1,ENST00000489163.1,ENST00000540053.1	chr20	34262433:34262539:34262966:34263124:34268658:34268793,	34262967	34263124	34263057	34263057	Frame_Shift_Del	C	-	p.G286fs
LIHC	TCGA-DD-A1EG-01	PHF20	ENST00000374000.4,ENST00000481202.1,ENST00000439301.1,ENST00000339089.6,ENST00000374012.3	chr20	34389412:34389527:34430494:34430666:34435271:34435352,	34430495	34430666	34430639	34430639	Frame_Shift_Del	G	-	p.E76fs
LIHC	TCGA-DD-A1EG-01	AAR2	ENST00000320849.4	chr20	34824386:34824425:34827742:34828547:34832618:34832848,	34827743	34828547	34828531	34828531	Frame_Shift_Del	C	-	p.S247fs
LIHC	TCGA-DD-A1EG-01	DLGAP4	ENST00000373913.3,ENST00000373907.2,ENST00000401952.2	chr20	34995551:34995678:35060048:35061119:35064511:35064753,	35060049	35061119	35060292	35060292	Frame_Shift_Del	T	-	p.F58fs
LIHC	TCGA-DD-A1EG-01	SAMHD1	ENST00000262878.4	chr20	35518631:35521469:35526224:35526362:35526842:35526947,	35526225	35526362	35526264	35526264	Frame_Shift_Del	A	-	p.F569fs
LIHC	TCGA-DD-A1EG-01	MROH8	ENST00000217333.8,ENST00000417458.1,ENST00000441008.2,ENST00000343811.4,ENST00000400441.3	chr20	35743575:35743740:35748100:35748241:35748906:35749021,	35748101	35748241	35748132	35748132	Frame_Shift_Del	C	-	p.G780fs
LIHC	TCGA-DD-A1EG-01	MROH8	ENST00000217333.8,ENST00000417458.1,ENST00000441008.2,ENST00000343811.4,ENST00000400441.3	chr20	35748100:35748241:35748906:35749021:35749301:35749439,	35748907	35749021	35748949	35748949	Frame_Shift_Del	C	-	p.G729fs
LIHC	TCGA-DD-A1EG-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676865	36676865	Frame_Shift_Del	A	-	p.K133fs
LIHC	TCGA-DD-A1EG-01	LBP	ENST00000217407.2	chr20	36979213:36979342:36982683:36982839:36983745:36983809,	36982684	36982839	36982747	36982747	Frame_Shift_Del	G	-	p.L144fs
LIHC	TCGA-DD-A1EG-01	RALGAPB	ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3,ENST00000537204.1	chr20	37121572:37121775:37125995:37126159:37128089:37128276,	37125996	37126159	37126111	37126111	Frame_Shift_Del	T	-	p.F169fs
LIHC	TCGA-DD-A1EG-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3,ENST00000537204.1,ENST00000461423.1	chr20	37137727:37137851:37144834:37145013:37146148:37146297,	37144835	37145013	37144965	37144965	Frame_Shift_Del	T	-	p.F336fs
LIHC	TCGA-DD-A1EG-01	ACTR5	ENST00000243903.4	chr20	37394044:37394161:37394880:37395020:37396106:37396239,	37394881	37395020	37394914	37394914	Frame_Shift_Del	T	-	p.F443fs
LIHC	TCGA-DD-A1EG-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000477870.1,ENST00000483175.1,ENST00000373272.2	chr20	39797718:39797815:39798096:39798166:39798751:39798909,	39798097	39798166	39798114	39798114	Frame_Shift_Del	C	-	p.S866fs
LIHC	TCGA-DD-A1EG-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832962	39832962	Frame_Shift_Del	T	-	p.I199fs
LIHC	TCGA-DD-A1EG-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832962	39832962	Frame_Shift_Del	T	-	p.I199fs
LIHC	TCGA-DD-A1EG-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39833389	39833389	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-DD-A1EG-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39833389	39833389	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-DD-A1EG-01	LPIN3	ENST00000373257.3	chr20	39978413:39978534:39978694:39979037:39980460:39980560,	39978695	39979037	39978938	39978938	Frame_Shift_Del	G	-	p.G335fs
LIHC	TCGA-DD-A1EG-01	LPIN3	ENST00000373257.3	chr20	39978413:39978534:39978694:39979037:39980460:39980560,	39978695	39979037	39978952	39978952	Frame_Shift_Del	C	-	p.L339fs
LIHC	TCGA-DD-A1EG-01	LPIN3	ENST00000373257.3	chr20	39978413:39978534:39978694:39979037:39980460:39980560,	39978695	39979037	39979001	39979001	Frame_Shift_Del	C	-	p.P356fs
LIHC	TCGA-DD-A1EG-01	CHD6	ENST00000373233.3	chr20	40049147:40050719:40052131:40052340:40053817:40054029,	40052132	40052340	40052189	40052189	Frame_Shift_Del	A	-	p.Y1500fs
LIHC	TCGA-DD-A1EG-01	CHD6	ENST00000373233.3	chr20	40112991:40113247:40116304:40116448:40117067:40117244,	40116305	40116448	40116316	40116316	Frame_Shift_Del	T	-	p.T664fs
LIHC	TCGA-DD-A1EG-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42223361:42223457:42225074:42225162:42232399:42232529,	42225075	42225162	42225114	42225114	Frame_Shift_Del	G	-	p.V53fs
LIHC	TCGA-DD-A1EG-01	MYBL2	ENST00000396863.4	chr20	42302445:42302539:42311433:42311526:42315491:42315665,	42311434	42311526	42311496	42311496	Frame_Shift_Del	G	-	p.K83fs
LIHC	TCGA-DD-A1EG-01	MYBL2	ENST00000396863.4,ENST00000217026.4	chr20	42333858:42333998:42338602:42338702:42340127:42340241,	42338603	42338702	42338656	42338656	Frame_Shift_Del	C	-	p.T520fs
LIHC	TCGA-DD-A1EG-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694616	42694616	Frame_Shift_Del	C	-	p.P392fs
LIHC	TCGA-DD-A1EG-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694668	42694668	Frame_Shift_Del	C	-	p.A408fs
LIHC	TCGA-DD-A1EG-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694676	42694676	Frame_Shift_Del	C	-	p.P412fs
LIHC	TCGA-DD-A1EG-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694692	42694692	Frame_Shift_Del	C	-	p.T416fs
LIHC	TCGA-DD-A1EG-01	WISP2	ENST00000372868.2,ENST00000190983.4	chr20	43348627:43348762:43353378:43353633:43355727:43356122,43348537:43348754:43353378:43353633:43355727:43356122,	43353379	43353633	43353536	43353536	Frame_Shift_Del	C	-	p.C145fs
LIHC	TCGA-DD-A1EG-01	PABPC1L	ENST00000217073.2,ENST00000537323.1,ENST00000255136.3,ENST00000217074.4	chr20	43541300:43541494:43545396:43545512:43547546:43547686,	43545397	43545512	43545422	43545422	Frame_Shift_Del	G	-	p.R138fs
LIHC	TCGA-DD-A1EG-01	PABPC1L	ENST00000217073.2,ENST00000537323.1,ENST00000255136.3,ENST00000217074.4	chr20	43541300:43541494:43545396:43545512:43547546:43547686,	43545397	43545512	43545487	43545487	Frame_Shift_Del	G	-	p.G160fs
LIHC	TCGA-DD-A1EG-01	PABPC1L	ENST00000217073.2,ENST00000537323.1,ENST00000255136.3,ENST00000217074.4	chr20	43547634:43547686:43547823:43547918:43550234:43550372,	43547824	43547918	43547826	43547826	Frame_Shift_Del	A	-	p.K216fs
LIHC	TCGA-DD-A1EG-01	PABPC1L	ENST00000217073.2,ENST00000255136.3	chr20	43559161:43559367:43560982:43561073:43561712:43561826,	43560983	43561073	43561038	43561038	Frame_Shift_Del	C	-	p.A432fs
LIHC	TCGA-DD-A1EG-01	PABPC1L	ENST00000217073.2,ENST00000372819.1,ENST00000537323.1,ENST00000255136.3,ENST00000372824.1,ENST00000476056.1,ENST00000479873.1,ENST00000465761.1,ENST00000217075.2,ENST00000372826.2	chr20	43561775:43561826:43564031:43564138:43565277:43565371,	43564032	43564138	43564087	43564087	Frame_Shift_Del	C	-	p.G54fs
LIHC	TCGA-DD-A1EG-01	PABPC1L	ENST00000372826.2	chr20	43565277:43565371:43566701:43566832:43581283:43581345,43565277:43565371:43566701:43566832:43586977:43587448,	43566702	43566832	43566812	43566812	Frame_Shift_Del	C	-	p.P140fs
LIHC	TCGA-DD-A1EG-01	WFDC3	ENST00000471401.1	chr20	44403038:44403083:44404055:44404241:44420470:44420507,	44404056	44404241	44404219	44404219	Frame_Shift_Del	T	-	p.K172fs
LIHC	TCGA-DD-A1EG-01	UBE2C	ENST00000335046.3	chr20	44442075:44442103:44443022:44443109:44444179:44444196,44442075:44442103:44443022:44443109:44444028:44444179,	44443023	44443109	44443069	44443069	Frame_Shift_Del	T	-	p.L20fs
LIHC	TCGA-DD-A1EG-01	ACOT8	ENST00000461272.1	chr20	44470403:44470595:44472165:44472411:44472901:44473059,	44472166	44472411	44472323	44472323	Frame_Shift_Del	G	-	p.A228fs
LIHC	TCGA-DD-A1EG-01	ACOT8	ENST00000217455.4,ENST00000488679.1	chr20	44470403:44470595:44472165:44472360:44472901:44473059,	44472166	44472360	44472323	44472323	Frame_Shift_Del	G	-	p.A228fs
LIHC	TCGA-DD-A1EG-01	CTSA	ENST00000354880.5	chr20	44520554:44520666:44521036:44521123:44521363:44521403,	44521037	44521123	44521100	44521100	Frame_Shift_Del	T	-	p.F159fs
LIHC	TCGA-DD-A1EG-01	CTSA	ENST00000606066.1	chr20	44520554:44520666:44520911:44521123:44521363:44521403,	44520912	44521123	44521100	44521100	Frame_Shift_Del	T	-	p.F159fs
LIHC	TCGA-DD-A1EG-01	CTSA	ENST00000606788.1,ENST00000191018.5,ENST00000372484.3,ENST00000354880.5,ENST00000372459.2	chr20	44525642:44525679:44526355:44526445:44526643:44526748,	44526356	44526445	44526432	44526432	Frame_Shift_Del	C	-	p.S432fs
LIHC	TCGA-DD-A1EG-01	ZNF335	ENST00000322927.2,ENST00000426788.1	chr20	44582327:44582587:44586224:44586319:44586473:44586567,	44586225	44586319	44586230	44586230	Frame_Shift_Del	G	-	p.L813fs
LIHC	TCGA-DD-A1EG-01	MMP9	ENST00000372330.3	chr20	44640775:44640952:44641065:44641221:44641893:44642022,	44641066	44641221	44641176	44641176	Frame_Shift_Del	C	-	p.P430fs
LIHC	TCGA-DD-A1EG-01	SLC35C2	ENST00000484318.1,ENST00000481809.1	chr20	44986261:44986412:44987025:44987402:44993009:44993020,44986261:44986341:44987025:44987402:44993009:44993020,	44987026	44987402	44987140	44987140	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A1EG-01	SLC35C2	ENST00000543605.1	chr20	44986261:44986412:44987025:44987197:44987329:44987402,	44987026	44987197	44987140	44987140	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A1EG-01	SLC35C2	ENST00000243896.2	chr20	44986261:44986412:44987025:44987597:44991724:44991813,44986261:44986412:44987025:44987597:44993009:44993020,	44987026	44987597	44987140	44987140	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A1EG-01	SLC13A3	ENST00000472148.1,ENST00000417157.2,ENST00000468915.1	chr20	45239084:45239248:45242098:45242364:45279949:45280079,45239084:45239248:45242098:45242364:45298681:45298778,	45242099	45242364	45242226	45242226	Frame_Shift_Del	G	-	p.Q84fs
LIHC	TCGA-DD-A1EG-01	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000497062.2,ENST00000317304.6	chr20	45618639:45618758:45630066:45630112:45633580:45633718,	45630067	45630112	45630082	45630082	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-DD-A1EG-01	ZMYND8	ENST00000461685.1,ENST00000262975.4,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000446994.2,ENST00000471951.2	chr20	45839405:45839542:45841286:45841370:45848908:45848975,	45841287	45841370	45841334	45841334	Frame_Shift_Del	G	-	p.P1108fs
LIHC	TCGA-DD-A1EG-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45849964:45850125:45852969:45853209:45855945:45856024,	45852970	45853209	45853111	45853111	Frame_Shift_Del	C	-	p.V1019fs
LIHC	TCGA-DD-A1EG-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45874751:45875261:45878030:45878183:45891031:45891172,	45878031	45878183	45878120	45878120	Frame_Shift_Del	G	-	p.P542fs
LIHC	TCGA-DD-A1EG-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45874751:45875261:45878030:45878183:45891031:45891172,	45878031	45878183	45878159	45878159	Frame_Shift_Del	A	-	p.L529fs
LIHC	TCGA-DD-A1EG-01	ZMYND8	ENST00000461685.1,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000536340.1,ENST00000471951.2,ENST00000352431.2	chr20	45923409:45923523:45927472:45927691:45938799:45938948,	45927473	45927691	45927496	45927496	Frame_Shift_Del	C	-	p.D124fs
LIHC	TCGA-DD-A1EG-01	ZMYND8	ENST00000360911.3,ENST00000468376.2,ENST00000458360.2,ENST00000372023.3,ENST00000540497.1,ENST00000396281.4,ENST00000435836.1	chr20	45923409:45923523:45927472:45927616:45938799:45938948,	45927473	45927616	45927496	45927496	Frame_Shift_Del	C	-	p.D124fs
LIHC	TCGA-DD-A1EG-01	ZMYND8	ENST00000461685.1,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000536340.1,ENST00000471951.2,ENST00000352431.2	chr20	45927472:45927616:45938799:45938948:45976599:45976670,45927472:45927691:45938799:45938948:45976599:45976670,	45938800	45938948	45938851	45938851	Frame_Shift_Del	G	-	p.P41fs
LIHC	TCGA-DD-A1EG-01	NCOA3	ENST00000372004.3,ENST00000371998.3	chr20	46256665:46256767:46262239:46262380:46262791:46262939,	46262240	46262380	46262326	46262326	Frame_Shift_Del	T	-	p.F305fs
LIHC	TCGA-DD-A1EG-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46262791:46262939:46264065:46264457:46264634:46265506,	46264066	46264457	46264253	46264253	Frame_Shift_Del	G	-	p.G435fs
LIHC	TCGA-DD-A1EG-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46262791:46262939:46264065:46264457:46264634:46265506,	46264066	46264457	46264403	46264403	Frame_Shift_Del	C	-	p.P484fs
LIHC	TCGA-DD-A1EG-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46295003:46295232:46300941:46301137:46305237:46305367,	46300942	46301137	46300955	46300955	Frame_Shift_Del	T	-	p.K521fs
LIHC	TCGA-DD-A1EG-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46295003:46295232:46300941:46301137:46305237:46305367,	46300942	46301137	46301067	46301067	Frame_Shift_Del	C	-	p.G485fs
LIHC	TCGA-DD-A1EG-01	ARFGEF2	ENST00000371917.4	chr20	47569241:47569421:47570092:47570327:47580366:47580435,	47570093	47570327	47570226	47570226	Frame_Shift_Del	A	-	p.E246fs
LIHC	TCGA-DD-A1EG-01	ARFGEF2	ENST00000371917.4	chr20	47639587:47639718:47641849:47642018:47645066:47645205,	47641850	47642018	47641979	47641979	Frame_Shift_Del	A	-	p.N1629fs
LIHC	TCGA-DD-A1EG-01	ARFGEF2	ENST00000371917.4	chr20	47641849:47642018:47645066:47645205:47648585:47648703,	47645067	47645205	47645098	47645098	Frame_Shift_Del	A	-	p.L1652fs
LIHC	TCGA-DD-A1EG-01	CSE1L	ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47705783:47705934:47706074:47706283:47707278:47707376,	47706075	47706283	47706125	47706125	Frame_Shift_Del	A	-	p.K675fs
LIHC	TCGA-DD-A1EG-01	CSE1L	ENST00000469700.1,ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47708582:47708664:47710676:47710823:47711268:47711500,	47710677	47710823	47710697	47710697	Frame_Shift_Del	A	-	p.E823fs
LIHC	TCGA-DD-A1EG-01	SLC9A8	ENST00000541138.1	chr20	48456077:48456136:48466115:48466217:48471974:48472118,48461572:48461656:48466115:48466217:48471974:48472118,	48466116	48466217	48466181	48466181	Frame_Shift_Del	T	-	p.A166fs
LIHC	TCGA-DD-A1EG-01	SLC9A8	ENST00000541138.1	chr20	48471974:48472118:48481264:48481381:48491241:48491358,	48481265	48481381	48481334	48481334	Frame_Shift_Del	T	-	p.I320fs
LIHC	TCGA-DD-A1EG-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520438	49520438	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-DD-A1EG-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520492	49520492	Frame_Shift_Del	T	-	p.K14fs
LIHC	TCGA-DD-A1EG-01	NFATC2	ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000610033.1	chr20	50007945:50007988:50048603:50049293:50051724:50051851,50015179:50015267:50048603:50049293:50051724:50051851,	50048604	50049293	50049113	50049113	Frame_Shift_Del	G	-	p.P738fs
LIHC	TCGA-DD-A1EG-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50255881:50256043:50273476:50273689:50286535:50286648,	50273477	50273689	50273570	50273570	Frame_Shift_Del	G	-	p.P471fs
LIHC	TCGA-DD-A1EG-01	ZFP64	ENST00000467811.1,ENST00000456175.1,ENST00000395989.3,ENST00000371523.4,ENST00000361387.2,ENST00000371518.2	chr20	50704930:50705182:50713911:50713974:50714976:50715005,	50713912	50713974	50713918	50713918	Frame_Shift_Del	G	-	p.H324fs
LIHC	TCGA-DD-A1EG-01	ZFP64	ENST00000477786.1,ENST00000361387.2,ENST00000371518.2	chr20	50714976:50715126:50776661:50776913:50781233:50781296,	50776662	50776913	50776714	50776714	Frame_Shift_Del	G	-	p.P237fs
LIHC	TCGA-DD-A1EG-01	ZFP64	ENST00000477786.1,ENST00000361387.2,ENST00000371518.2	chr20	50714976:50715126:50776661:50776913:50781233:50781296,	50776662	50776913	50776773	50776773	Frame_Shift_Del	G	-	p.L218fs
LIHC	TCGA-DD-A1EG-01	ZNF217	ENST00000371471.2,ENST00000302342.3	chr20	52185358:52185803:52188259:52188392:52192265:52192566,	52188260	52188392	52188338	52188338	Frame_Shift_Del	T	-	p.N1031fs
LIHC	TCGA-DD-A1EG-01	DOK5	ENST00000395939.1,ENST00000262593.5	chr20	53208154:53208344:53226926:53227062:53259996:53260117,	53226927	53227062	53226973	53226973	Frame_Shift_Del	G	-	p.G216fs
LIHC	TCGA-DD-A1EG-01	CSTF1	ENST00000493039.1,ENST00000217109.4	chr20	54972699:54972897:54974022:54974413:54978523:54979518,	54974023	54974413	54974315	54974315	Frame_Shift_Del	T	-	p.I313fs
LIHC	TCGA-DD-A1EG-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208443	55208443	Frame_Shift_Del	C	-	p.L207fs
LIHC	TCGA-DD-A1EG-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099187	56099187	Frame_Shift_Del	T	-	p.K25fs
LIHC	TCGA-DD-A1EG-01	ZBP1	ENST00000343535.4,ENST00000432548.2,ENST00000541799.1	chr20	56190567:56190636:56191299:56191524:56195274:56195534,56190567:56190636:56191299:56191524:56195317:56195450,	56191300	56191524	56191476	56191476	Frame_Shift_Del	G	-	p.P28fs
LIHC	TCGA-DD-A1EG-01	PPP4R1L	ENST00000334187.8,ENST00000422302.1,ENST00000244070.3,ENST00000495058.1,ENST00000493688.1	chr20	56822377:56822562:56823170:56823329:56825942:56826008,	56823171	56823329	56823230	56823230	Frame_Shift_Del	C	-	p.V237fs
LIHC	TCGA-DD-A1EG-01	PPP4R1L	ENST00000334187.8,ENST00000244070.3,ENST00000495058.1	chr20	56826812:56826920:56846418:56846561:56847824:56847881,	56846419	56846561	56846507	56846507	Frame_Shift_Del	A	-	p.L116fs
LIHC	TCGA-DD-A1EG-01	APCDD1L	ENST00000425773.1,ENST00000439429.1	chr20	57045664:57045803:57088872:57089043:57089714:57089953,	57088873	57089043	57088906	57088906	Frame_Shift_Del	G	-	p.Q17fs
LIHC	TCGA-DD-A1EG-01	GNAS	ENST00000354359.7,ENST00000371085.3,ENST00000477931.1,ENST00000496934.1,ENST00000306090.10,ENST00000494081.1,ENST00000371102.4,ENST00000488546.1,ENST00000313949.7,ENST00000371095.3,ENST00000476196.1,ENST00000487862.1,ENST00000371100.4,ENST00000371075.3,ENST00000480975.1,ENST00000265620.7,ENST00000464624.2	chr20	57484738:57484859:57485005:57485136:57485388:57485420,	57485006	57485136	57485043	57485043	Frame_Shift_Del	A	-	p.K936fs
LIHC	TCGA-DD-A1EG-01	CTSZ	ENST00000503833.2,ENST00000488395.1,ENST00000217131.5	chr20	57572657:57572808:57576519:57576699:57581376:57581481,	57576520	57576699	57576574	57576574	Frame_Shift_Del	G	-	p.H145fs
LIHC	TCGA-DD-A1EG-01	EDN3	ENST00000311585.7	chr20	57896075:57896248:57897426:57897507:57899385:57899529,	57897427	57897507	57897501	57897501	Frame_Shift_Del	A	-	p.Q206fs
LIHC	TCGA-DD-A1EG-01	PHACTR3	ENST00000361300.4,ENST00000359926.3,ENST00000492611.1,ENST00000355648.4,ENST00000371015.1,ENST00000395636.2,ENST00000541461.1,ENST00000395639.4	chr20	58415427:58415485:58416449:58416590:58420243:58420320,	58416450	58416590	58416488	58416488	Frame_Shift_Del	A	-	p.R495fs
LIHC	TCGA-DD-A1EG-01	SYCP2	ENST00000357552.3,ENST00000371001.2,ENST00000412613.1	chr20	58440861:58440920:58441347:58441447:58441549:58441644,	58441348	58441447	58441387	58441387	Frame_Shift_Del	T	-	p.K1427fs
LIHC	TCGA-DD-A1EG-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452585	58452585	Frame_Shift_Del	T	-	p.K1002fs
LIHC	TCGA-DD-A1EG-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2,ENST00000474749.1	chr20	58456491:58456547:58456999:58457057:58457149:58457220,	58457000	58457057	58457006	58457006	Frame_Shift_Del	T	-	p.K884fs
LIHC	TCGA-DD-A1EG-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467316	58467316	Frame_Shift_Del	T	-	p.N698fs
LIHC	TCGA-DD-A1EG-01	TAF4	ENST00000252996.4,ENST00000436129.2	chr20	60574038:60574164:60575179:60575310:60575607:60575777,	60575180	60575310	60575303	60575303	Frame_Shift_Del	T	-	p.K888fs
LIHC	TCGA-DD-A1EG-01	PSMA7	ENST00000442551.1	chr20	60711962:60712005:60712419:60712521:60713226:60713346,	60712420	60712521	60712460	60712460	Frame_Shift_Del	T	-	p.N205fs
LIHC	TCGA-DD-A1EG-01	PSMA7	ENST00000486193.1,ENST00000370873.4,ENST00000484488.1,ENST00000370861.1	chr20	60711962:60712005:60712419:60712482:60713226:60713346,	60712420	60712482	60712460	60712460	Frame_Shift_Del	T	-	p.N205fs
LIHC	TCGA-DD-A1EG-01	LAMA5	ENST00000252999.3	chr20	60889610:60889781:60889854:60890003:60890083:60890263,	60889855	60890003	60889878	60889878	Frame_Shift_Del	G	-	p.Q2725fs
LIHC	TCGA-DD-A1EG-01	LAMA5	ENST00000252999.3	chr20	60901920:60902022:60902288:60902462:60902584:60902725,	60902289	60902462	60902294	60902294	Frame_Shift_Del	C	-	p.D1703fs
LIHC	TCGA-DD-A1EG-01	SLCO4A1	ENST00000370507.1,ENST00000217159.1,ENST00000497209.1	chr20	61287710:61288602:61290028:61290119:61291763:61291885,	61290029	61290119	61290111	61290111	Frame_Shift_Del	G	-	p.M293fs
LIHC	TCGA-DD-A1EG-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61835084	61835084	Frame_Shift_Del	G	-	p.L70fs
LIHC	TCGA-DD-A1EG-01	ARFGAP1	ENST00000519604.1,ENST00000353546.3,ENST00000547204.1	chr20	61916217:61916274:61917005:61917065:61917717:61917750,61916217:61916274:61917005:61917065:61917723:61917794,	61917006	61917065	61917022	61917022	Frame_Shift_Del	T	-	p.I264fs
LIHC	TCGA-DD-A1EG-01	COL20A1	ENST00000435874.1,ENST00000358894.6,ENST00000326996.6,ENST00000422202.1	chr20	61942982:61943100:61943267:61943407:61943771:61943901,	61943268	61943407	61943277	61943277	Frame_Shift_Del	C	-	p.A565fs
LIHC	TCGA-DD-A1EG-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000358894.6,ENST00000455906.1,ENST00000415763.1,ENST00000326996.6,ENST00000471582.1,ENST00000422202.1	chr20	61957447:61957501:61958103:61958175:61959303:61959339,	61958104	61958175	61958129	61958129	Frame_Shift_Del	G	-	p.R1168fs
LIHC	TCGA-DD-A1EG-01	SLC2A4RG	ENST00000474248.1,ENST00000266077.2	chr20	62372756:62372832:62373221:62373409:62373482:62373519,	62373222	62373409	62373347	62373347	Frame_Shift_Del	C	-	p.P174fs
LIHC	TCGA-DD-A1EG-01	ZBTB46	ENST00000245663.4,ENST00000395104.1,ENST00000302995.2	chr20	62384038:62384214:62407030:62407315:62421173:62421212,	62407031	62407315	62407053	62407053	Frame_Shift_Del	G	-	p.P400fs
LIHC	TCGA-DD-A1EG-01	TPD52L2	ENST00000217121.5,ENST00000352482.4,ENST00000346249.4	chr20	62500717:62500794:62505020:62505169:62514071:62514173,62500717:62500794:62505020:62505169:62507168:62507228,	62505021	62505169	62505113	62505113	Frame_Shift_Del	G	-	p.L86fs
LIHC	TCGA-DD-A1EG-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62595423:62595570:62595672:62595744:62595842:62596069,	62595673	62595744	62595720	62595720	Frame_Shift_Del	T	-	p.K429fs
LIHC	TCGA-DD-A1EG-01	OPRL1	ENST00000355631.4	chr20	62711548:62711705:62724040:62724306:62729154:62729510,	62724041	62724306	62724170	62724170	Frame_Shift_Del	C	-	p.P34fs
LIHC	TCGA-DD-A1EG-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839166	62839166	Frame_Shift_Del	C	-	p.A206fs
LIHC	TCGA-DD-A1EG-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62836905:62837153:62838946:62839840:62842558:62842693,	62838947	62839840	62839718	62839718	Frame_Shift_Del	A	-	p.E390fs
LIHC	TCGA-DD-A1EG-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62838946:62839840:62842558:62842693:62843400:62843491,	62842559	62842693	62842683	62842683	Frame_Shift_Del	C	-	p.I472fs
LIHC	TCGA-DD-A1EG-01	LIPI	ENST00000536861.1	chr21	15558281:15558390:15561354:15561740:15583120:15583166,	15561355	15561740	15561488	15561488	Frame_Shift_Del	A	-	p.L122fs
LIHC	TCGA-DD-A1EG-01	HSPA13	ENST00000285667.3	chr21	15747972:15748140:15750519:15750733:15753523:15753732,	15750520	15750733	15750669	15750669	Frame_Shift_Del	G	-	p.P144fs
LIHC	TCGA-DD-A1EG-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15884764:15884894:15889212:15889362:15893470:15893542,	15889213	15889362	15889284	15889284	Frame_Shift_Del	T	-	p.M138fs
LIHC	TCGA-DD-A1EG-01	CXADR	ENST00000400165.1	chr21	18919344:18919511:18924066:18924271:18931293:18931449,18919344:18919511:18924066:18924271:18937745:18937805,	18924067	18924271	18924223	18924223	Frame_Shift_Del	A	-	p.K124fs
LIHC	TCGA-DD-A1EG-01	CXADR	ENST00000400169.1,ENST00000284878.7	chr21	18931293:18931449:18933019:18933142:18933655:18933794,	18933020	18933142	18933045	18933045	Frame_Shift_Del	A	-	p.V199fs
LIHC	TCGA-DD-A1EG-01	APP	ENST00000354192.3,ENST00000348990.5,ENST00000448388.2,ENST00000359726.3,ENST00000439274.2,ENST00000448850.1,ENST00000440126.3,ENST00000415997.1,ENST00000357903.3,ENST00000358918.3,ENST00000346798.3	chr21	27347502:27347541:27348266:27348341:27354656:27354790,	27348267	27348341	27348291	27348291	Frame_Shift_Del	T	-	p.K425fs
LIHC	TCGA-DD-A1EG-01	USP16	ENST00000399976.2,ENST00000535828.1,ENST00000399975.3,ENST00000334352.4	chr21	30414835:30414849:30415743:30415920:30418987:30419642,	30415744	30415920	30415885	30415885	Frame_Shift_Del	A	-	p.K442fs
LIHC	TCGA-DD-A1EG-01	CCT8	ENST00000431234.1,ENST00000542732.1,ENST00000494296.1,ENST00000286788.4,ENST00000484403.1,ENST00000481059.1,ENST00000470450.1	chr21	30439910:30440026:30441743:30441823:30442567:30442658,	30441744	30441823	30441783	30441783	Frame_Shift_Del	A	-	p.F64fs
LIHC	TCGA-DD-A1EG-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698571	30698571	Frame_Shift_Del	A	-	p.R142fs
LIHC	TCGA-DD-A1EG-01	TIAM1	ENST00000469412.1,ENST00000541036.1,ENST00000286827.3	chr21	32598041:32598266:32617803:32617976:32624057:32624505,	32617804	32617976	32617961	32617961	Frame_Shift_Del	A	-	p.F476fs
LIHC	TCGA-DD-A1EG-01	TIAM1	ENST00000541036.1,ENST00000286827.3	chr21	32624057:32624505:32638325:32639299:32649047:32649083,	32638326	32639299	32638373	32638373	Frame_Shift_Del	T	-	p.I306fs
LIHC	TCGA-DD-A1EG-01	URB1	ENST00000382751.3	chr21	33688776:33689376:33689986:33690228:33691526:33691724,	33689987	33690228	33690213	33690213	Frame_Shift_Del	G	-	p.P1936fs
LIHC	TCGA-DD-A1EG-01	TMEM50B	ENST00000441128.1,ENST00000420455.1,ENST00000542230.2	chr21	34823111:34823170:34828033:34828091:34832719:34832812,	34828034	34828091	34828080	34828080	Frame_Shift_Del	A	-	p.Y129fs
LIHC	TCGA-DD-A1EG-01	TMEM50B	ENST00000420455.1,ENST00000542230.2	chr21	34828033:34828091:34832719:34832812:34837648:34837716,	34832720	34832812	34832772	34832772	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-DD-A1EG-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000467575.1,ENST00000381839.3,ENST00000381831.3	chr21	34894497:34894589:34897075:34897307:34900472:34900641,	34897076	34897307	34897247	34897247	Frame_Shift_Del	T	-	p.N376fs
LIHC	TCGA-DD-A1EG-01	GART	ENST00000381815.4,ENST00000381839.3,ENST00000361093.5,ENST00000381831.3	chr21	34897075:34897307:34900472:34900641:34900824:34900910,	34900473	34900641	34900487	34900487	Frame_Shift_Del	C	-	p.G351fs
LIHC	TCGA-DD-A1EG-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34924505	34924505	Frame_Shift_Del	C	-	p.P990fs
LIHC	TCGA-DD-A1EG-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34925253	34925253	Frame_Shift_Del	T	-	p.V1239fs
LIHC	TCGA-DD-A1EG-01	DONSON	ENST00000453626.1,ENST00000303071.5,ENST00000432378.1,ENST00000437395.1	chr21	34955793:34955972:34956895:34957074:34958283:34958487,	34956896	34957074	34956960	34956960	Frame_Shift_Del	T	-	p.M241fs
LIHC	TCGA-DD-A1EG-01	DONSON	ENST00000303113.6	chr21	34955793:34955972:34956895:34957032:34958283:34958487,	34956896	34957032	34956960	34956960	Frame_Shift_Del	T	-	p.M241fs
LIHC	TCGA-DD-A1EG-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122588	35122588	Frame_Shift_Del	C	-	p.P164fs
LIHC	TCGA-DD-A1EG-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122588	35122588	Frame_Shift_Del	C	-	p.P164fs
LIHC	TCGA-DD-A1EG-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35147271:35147412:35153764:35153852:35154297:35154437,	35153765	35153852	35153799	35153799	Frame_Shift_Del	A	-	p.E544fs
LIHC	TCGA-DD-A1EG-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000379960.5,ENST00000399326.3,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1	chr21	35172226:35172233:35183278:35183526:35186216:35186376,	35183279	35183526	35183366	35183366	Frame_Shift_Del	A	-	p.K803fs
LIHC	TCGA-DD-A1EG-01	CLIC6	ENST00000349499.2	chr21	36041687:36043061:36079577:36079687:36080241:36080367,	36079578	36079687	36079647	36079647	Frame_Shift_Del	A	-	p.K500fs
LIHC	TCGA-DD-A1EG-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252946	36252946	Frame_Shift_Del	T	-	p.N112fs
LIHC	TCGA-DD-A1EG-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37732481:37732556:37734480:37734526:37736390:37736557,	37734481	37734526	37734489	37734489	Frame_Shift_Del	A	-	p.E472fs
LIHC	TCGA-DD-A1EG-01	SIM2	ENST00000481185.1,ENST00000431229.1,ENST00000290399.6,ENST00000430056.3	chr21	38081480:38081550:38084832:38084922:38092121:38092230,	38084833	38084922	38084872	38084872	Frame_Shift_Del	A	-	p.K100fs
LIHC	TCGA-DD-A1EG-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000492275.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000463216.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38480691:38480746:38494116:38494279:38495282:38495328,	38494117	38494279	38494193	38494193	Frame_Shift_Del	A	-	p.Q326fs
LIHC	TCGA-DD-A1EG-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38538668	38538668	Frame_Shift_Del	T	-	p.Y1384fs
LIHC	TCGA-DD-A1EG-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38538761	38538761	Frame_Shift_Del	A	-	p.V1415fs
LIHC	TCGA-DD-A1EG-01	TTC3	ENST00000479930.1,ENST00000354749.2,ENST00000488522.1,ENST00000428693.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38567975:38568337:38569870:38569997:38570182:38570248,	38569871	38569997	38569893	38569893	Frame_Shift_Del	A	-	p.K1869fs
LIHC	TCGA-DD-A1EG-01	ERG	ENST00000442448.1,ENST00000398911.1,ENST00000398910.1,ENST00000468474.1,ENST00000417133.2,ENST00000398919.2	chr21	39795331:39795483:39817326:39817544:39870286:39870345,39795331:39795483:39817326:39817544:39947585:39947671,	39817327	39817544	39817430	39817430	Frame_Shift_Del	A	-	p.S52fs
LIHC	TCGA-DD-A1EG-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40581920:40582073:40582711:40582855:40584591:40584633,	40582712	40582855	40582837	40582837	Frame_Shift_Del	T	-	p.S1307fs
LIHC	TCGA-DD-A1EG-01	BRWD1	ENST00000473813.1	chr21	40581920:40582073:40582791:40582855:40584591:40584633,	40582792	40582855	40582837	40582837	Frame_Shift_Del	T	-	p.S1307fs
LIHC	TCGA-DD-A1EG-01	LCA5L	ENST00000418018.1,ENST00000288350.3,ENST00000358268.2,ENST00000485895.2,ENST00000380671.2	chr21	40795345:40795416:40800097:40800429:40801056:40801137,	40800098	40800429	40800113	40800113	Frame_Shift_Del	T	-	p.I103fs
LIHC	TCGA-DD-A1EG-01	MX2	ENST00000330714.3,ENST00000482953.1,ENST00000496774.1	chr21	42770911:42770946:42771122:42771264:42773896:42774055,	42771123	42771264	42771221	42771221	Frame_Shift_Del	T	-	p.D457fs
LIHC	TCGA-DD-A1EG-01	TMPRSS2	ENST00000398585.3,ENST00000454499.1,ENST00000458356.1,ENST00000424093.1,ENST00000332149.5	chr21	42861433:42861520:42866282:42866505:42870045:42870116,	42866283	42866505	42866370	42866370	Frame_Shift_Del	G	-	p.Q88fs
LIHC	TCGA-DD-A1EG-01	UBASH3A	ENST00000291535.6,ENST00000473381.1,ENST00000398367.1	chr21	43833518:43833632:43836550:43836720:43838509:43838718,43833132:43833331:43836550:43836720:43838509:43838718,	43836551	43836720	43836609	43836609	Frame_Shift_Del	C	-	p.Y242fs
LIHC	TCGA-DD-A1EG-01	RSPH1	ENST00000493019.1,ENST00000291536.3,ENST00000398352.3	chr21	43896007:43896157:43897400:43897554:43902746:43902818,	43897401	43897554	43897504	43897504	Frame_Shift_Del	T	-	p.K208fs
LIHC	TCGA-DD-A1EG-01	SLC37A1	ENST00000352133.2,ENST00000398341.3	chr21	43945885:43945967:43954807:43954940:43955581:43955660,	43954808	43954940	43954937	43954937	Frame_Shift_Del	T	-	p.F90fs
LIHC	TCGA-DD-A1EG-01	PDE9A	ENST00000335512.4,ENST00000398227.3,ENST00000490803.1,ENST00000467403.1,ENST00000335440.6,ENST00000470987.1,ENST00000398229.3,ENST00000539837.1,ENST00000398225.3,ENST00000460989.1,ENST00000468805.1,ENST00000398224.3,ENST00000380328.2,ENST00000398234.3,ENST00000349112.3,ENST00000398232.3,ENST00000495343.1,ENST00000495521.1,ENST00000328862.6,ENST00000462571.1,ENST00000489319.1,ENST00000398236.3,ENST00000291539.6,ENST00000497805.1	chr21	44185490:44185604:44188297:44188402:44189136:44189265,	44188298	44188402	44188382	44188382	Frame_Shift_Del	T	-	p.L481fs
LIHC	TCGA-DD-A1EG-01	CBS	ENST00000398158.1,ENST00000398168.1,ENST00000488526.1,ENST00000441030.1,ENST00000465732.1,ENST00000352178.5,ENST00000470912.1,ENST00000398165.3,ENST00000359624.3	chr21	44488618:44488725:44492094:44492311:44493375:44493413,	44492095	44492311	44492113	44492113	Frame_Shift_Del	G	-	p.P64fs
LIHC	TCGA-DD-A1EG-01	CBS	ENST00000398158.1,ENST00000398168.1,ENST00000488526.1,ENST00000441030.1,ENST00000465732.1,ENST00000352178.5,ENST00000470912.1,ENST00000398165.3,ENST00000359624.3	chr21	44488618:44488725:44492094:44492311:44493375:44493413,	44492095	44492311	44492180	44492180	Frame_Shift_Del	G	-	p.L42fs
LIHC	TCGA-DD-A1EG-01	HSF2BP	ENST00000443485.1,ENST00000291560.2	chr21	45064169:45064273:45076467:45076618:45077941:45078025,	45076468	45076618	45076589	45076589	Frame_Shift_Del	T	-	p.K22fs
LIHC	TCGA-DD-A1EG-01	TRAPPC10	ENST00000291574.4,ENST00000422875.1	chr21	45504002:45504144:45506682:45506841:45507579:45507809,	45506683	45506841	45506733	45506733	Frame_Shift_Del	G	-	p.G811fs
LIHC	TCGA-DD-A1EG-01	TRAPPC10	ENST00000459741.1,ENST00000291574.4,ENST00000422875.1	chr21	45513954:45514114:45518237:45518415:45522658:45522853,	45518238	45518415	45518268	45518268	Frame_Shift_Del	C	-	p.P1068fs
LIHC	TCGA-DD-A1EG-01	PWP2	ENST00000486126.1,ENST00000291576.7,ENST00000456705.1	chr21	45534505:45534649:45535144:45535280:45535571:45535625,	45535145	45535280	45535226	45535226	Frame_Shift_Del	G	-	p.L184fs
LIHC	TCGA-DD-A1EG-01	DNMT3L	ENST00000418993.1,ENST00000431166.1,ENST00000270172.3	chr21	45670692:45670832:45671505:45671581:45674499:45674588,	45671506	45671581	45671527	45671527	Frame_Shift_Del	G	-	p.H250fs
LIHC	TCGA-DD-A1EG-01	DNMT3L	ENST00000418993.1,ENST00000431166.1,ENST00000270172.3	chr21	45671505:45671581:45674499:45674588:45675949:45676037,	45674500	45674588	45674567	45674567	Frame_Shift_Del	A	-	p.L209fs
LIHC	TCGA-DD-A1EG-01	DNMT3L	ENST00000418993.1,ENST00000270172.3	chr21	45679319:45679432:45679514:45679594:45680677:45680722,	45679515	45679594	45679522	45679522	Frame_Shift_Del	G	-	p.P75fs
LIHC	TCGA-DD-A1EG-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309403	46309403	Frame_Shift_Del	C	-	p.G555fs
LIHC	TCGA-DD-A1EG-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46595941	46595941	Frame_Shift_Del	T	-	p.F109fs
LIHC	TCGA-DD-A1EG-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46595972	46595972	Frame_Shift_Del	T	-	p.V119fs
LIHC	TCGA-DD-A1EG-01	COL18A1	ENST00000359759.4,ENST00000355480.5,ENST00000400337.2	chr21	46893808:46893895:46895389:46895449:46896264:46896394,	46895390	46895449	46895411	46895411	Frame_Shift_Del	G	-	p.G669fs
LIHC	TCGA-DD-A1EG-01	COL6A1	ENST00000361866.3	chr21	47417613:47417676:47418034:47418085:47418311:47418347,	47418035	47418085	47418046	47418046	Frame_Shift_Del	C	-	p.G512fs
LIHC	TCGA-DD-A1EG-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47537787:47537850:47538527:47538590:47538943:47539033,	47538528	47538590	47538573	47538573	Frame_Shift_Del	G	-	p.G388fs
LIHC	TCGA-DD-A1EG-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47540473:47540491:47540974:47541037:47541469:47541532,	47540975	47541037	47541004	47541004	Frame_Shift_Del	C	-	p.G475fs
LIHC	TCGA-DD-A1EG-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000486937.1,ENST00000291688.1	chr21	47681193:47681325:47684030:47684131:47685234:47685437,	47684031	47684131	47684058	47684058	Frame_Shift_Del	C	-	p.G1103fs
LIHC	TCGA-DD-A1EG-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47819503:47819710:47821464:47821635:47822244:47822397,	47821465	47821635	47821569	47821569	Frame_Shift_Del	C	-	p.S1632fs
LIHC	TCGA-DD-A1EG-01	DIP2A	ENST00000400274.1,ENST00000427143.2,ENST00000417564.2,ENST00000318711.7	chr21	47969683:47969798:47970455:47970657:47971546:47971656,	47970456	47970657	47970533	47970533	Frame_Shift_Del	C	-	p.L906fs
LIHC	TCGA-DD-A1EG-01	DIP2A	ENST00000400274.1,ENST00000427143.2,ENST00000417564.2,ENST00000318711.7	chr21	47969683:47969798:47970455:47970657:47971546:47971656,	47970456	47970657	47970537	47970537	Frame_Shift_Del	G	-	p.G908fs
LIHC	TCGA-DD-A1EG-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48080764	48080764	Frame_Shift_Del	T	-	p.F285fs
LIHC	TCGA-DD-A1EG-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300932	18300932	Frame_Shift_Del	G	-	p.R1499fs
LIHC	TCGA-DD-A1EG-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301788	18301788	Frame_Shift_Del	G	-	p.P1213fs
LIHC	TCGA-DD-A1EG-01	CLTCL1	ENST00000263200.10,ENST00000505027.2,ENST00000413132.2,ENST00000427926.1,ENST00000353891.5	chr22	19223218:19223392:19226797:19226911:19230297:19230459,	19226798	19226911	19226837	19226837	Frame_Shift_Del	A	-	p.F252fs
LIHC	TCGA-DD-A1EG-01	GNB1L	ENST00000403325.1,ENST00000329517.6,ENST00000460402.1,ENST00000481086.1,ENST00000405009.1	chr22	19789625:19789739:19794181:19794280:19799807:19799970,	19794182	19794280	19794210	19794210	Frame_Shift_Del	C	-	p.G163fs
LIHC	TCGA-DD-A1EG-01	ARVCF	ENST00000406522.1,ENST00000263207.3,ENST00000344269.3,ENST00000406259.1,ENST00000495096.1,ENST00000401994.1	chr22	19959408:19959494:19959880:19959934:19960259:19960346,	19959881	19959934	19959886	19959886	Frame_Shift_Del	C	-	p.G897fs
LIHC	TCGA-DD-A1EG-01	TANGO2	ENST00000398042.2,ENST00000450664.1,ENST00000411907.1	chr22	20008661:20008769:20024282:20024377:20030877:20030966,20008624:20008657:20024282:20024377:20030877:20030966,	20024283	20024377	20024337	20024337	Frame_Shift_Del	T	-	p.F6fs
LIHC	TCGA-DD-A1EG-01	TANGO2	ENST00000399807.3	chr22	20008661:20008769:20024282:20024617:20030877:20030966,20008624:20008657:20024282:20024617:20030877:20030966,	20024283	20024617	20024337	20024337	Frame_Shift_Del	T	-	p.F6fs
LIHC	TCGA-DD-A1EG-01	TANGO2	ENST00000444651.1	chr22	20043470:20043536:20050860:20050965:20052064:20052216,	20050861	20050965	20050891	20050891	Frame_Shift_Del	G	-	p.Q212fs
LIHC	TCGA-DD-A1EG-01	TRMT2A	ENST00000252136.7,ENST00000439169.2,ENST00000404751.3,ENST00000403707.3	chr22	20102788:20102970:20103194:20103303:20103560:20103623,	20103195	20103303	20103200	20103200	Frame_Shift_Del	G	-	p.Q236fs
LIHC	TCGA-DD-A1EG-01	TRMT2A	ENST00000252136.7,ENST00000439169.2,ENST00000404751.3,ENST00000403707.3	chr22	20102788:20102970:20103194:20103303:20103560:20103623,	20103195	20103303	20103215	20103215	Frame_Shift_Del	C	-	p.V230fs
LIHC	TCGA-DD-A1EG-01	USP41	ENST00000454608.2,ENST00000486536.2,ENST00000292729.8	chr22	20718475:20718607:20720856:20721024:20721837:20721933,	20720857	20721024	20720919	20720919	Frame_Shift_Del	G	-	p.Q277fs
LIHC	TCGA-DD-A1EG-01	ZNF74	ENST00000357502.5	chr22	20748918:20748952:20749622:20749708:20753884:20753980,20748918:20748952:20749622:20749708:20754921:20755048,20748478:20748624:20749622:20749708:20754921:20755048,	20749623	20749708	20749683	20749683	Frame_Shift_Del	G	-	p.W32fs
LIHC	TCGA-DD-A1EG-01	KLHL22	ENST00000440659.2	chr22	20812094:20812287:20819144:20819863:20825636:20825802,20812094:20812287:20819144:20819863:20843271:20843499,	20819145	20819863	20819608	20819608	Frame_Shift_Del	C	-	p.A217fs
LIHC	TCGA-DD-A1EG-01	MED15	ENST00000492381.1,ENST00000433831.1,ENST00000406969.1,ENST00000542773.1,ENST00000541476.1,ENST00000263205.7,ENST00000382974.2,ENST00000292733.7,ENST00000425759.2	chr22	20918930:20918975:20920753:20921104:20922807:20922918,	20920754	20921104	20920922	20920922	Frame_Shift_Del	C	-	p.P287fs
LIHC	TCGA-DD-A1EG-01	MED15	ENST00000478831.1	chr22	20922852:20922918:20937126:20937254:20937399:20937534,	20937127	20937254	20937241	20937241	Frame_Shift_Del	T	-	p.P508fs
LIHC	TCGA-DD-A1EG-01	MED15	ENST00000542773.1	chr22	20938645:20938712:20939141:20939554:20940014:20940113,	20939142	20939554	20939248	20939248	Frame_Shift_Del	C	-	p.S637fs
LIHC	TCGA-DD-A1EG-01	MED15	ENST00000492381.1,ENST00000433831.1,ENST00000406969.1,ENST00000489651.1,ENST00000541476.1,ENST00000263205.7,ENST00000382974.2,ENST00000473244.1,ENST00000292733.7,ENST00000425759.2	chr22	20938645:20938712:20939141:20939302:20939387:20939554,	20939142	20939302	20939248	20939248	Frame_Shift_Del	C	-	p.S637fs
LIHC	TCGA-DD-A1EG-01	PI4KA	ENST00000477245.1,ENST00000572273.1,ENST00000482030.1,ENST00000414196.3,ENST00000255882.6	chr22	21065039:21065146:21065628:21065749:21066773:21066899,	21065629	21065749	21065746	21065746	Frame_Shift_Del	G	-	p.R1936fs
LIHC	TCGA-DD-A1EG-01	PI4KA	ENST00000477245.1,ENST00000572273.1,ENST00000414196.3,ENST00000255882.6	chr22	21083919:21083999:21084179:21084299:21087258:21087386,	21084180	21084299	21084216	21084216	Frame_Shift_Del	G	-	p.L1458fs
LIHC	TCGA-DD-A1EG-01	LZTR1	ENST00000389355.3	chr22	21340133:21340186:21341792:21341872:21342298:21342407,21337315:21337378:21341792:21341872:21342298:21342407,	21341793	21341872	21341819	21341819	Frame_Shift_Del	C	-	p.A116fs
LIHC	TCGA-DD-A1EG-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384089	21384089	Frame_Shift_Del	G	-	p.L516fs
LIHC	TCGA-DD-A1EG-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384367	21384367	Frame_Shift_Del	G	-	p.P420fs
LIHC	TCGA-DD-A1EG-01	UBE2L3	ENST00000496722.1	chr22	21922025:21922060:21947149:21947245:21965145:21965332,21922018:21922666:21947149:21947245:21965145:21965332,	21947150	21947245	21947180	21947180	Frame_Shift_Del	A	-	p.K20fs
LIHC	TCGA-DD-A1EG-01	BCR	ENST00000359540.3,ENST00000305877.8	chr22	23603541:23603727:23610594:23610702:23613718:23613779,	23610595	23610702	23610606	23610606	Frame_Shift_Del	G	-	p.L588fs
LIHC	TCGA-DD-A1EG-01	GSTT2B	ENST00000290765.4	chr22	24299805:24300119:24300471:24300645:24300737:24300888,	24300472	24300645	24300570	24300570	Frame_Shift_Del	G	-	p.L143fs
LIHC	TCGA-DD-A1EG-01	GSTT2B	ENST00000404172.3	chr22	24299805:24300119:24300513:24300645:24300737:24300888,	24300514	24300645	24300570	24300570	Frame_Shift_Del	G	-	p.L143fs
LIHC	TCGA-DD-A1EG-01	CABIN1	ENST00000445422.1,ENST00000454754.1	chr22	24434795:24434909:24439365:24439546:24445552:24445682,	24439366	24439546	24439458	24439458	Frame_Shift_Del	T	-	p.A146fs
LIHC	TCGA-DD-A1EG-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24483540:24483666:24487536:24487797:24491893:24492045,	24487537	24487797	24487790	24487790	Frame_Shift_Del	C	-	p.A1260fs
LIHC	TCGA-DD-A1EG-01	GGT5	ENST00000398292.3,ENST00000418439.2	chr22	24620963:24621074:24621212:24621382:24621513:24621620,	24621213	24621382	24621334	24621334	Frame_Shift_Del	G	-	p.P461fs
LIHC	TCGA-DD-A1EG-01	GGT5	ENST00000327365.4,ENST00000425408.1,ENST00000263112.7	chr22	24620963:24621074:24621212:24621379:24621513:24621620,	24621213	24621379	24621334	24621334	Frame_Shift_Del	G	-	p.P461fs
LIHC	TCGA-DD-A1EG-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622087	24622087	Frame_Shift_Del	C	-	p.E396fs
LIHC	TCGA-DD-A1EG-01	SGSM1	ENST00000473458.1,ENST00000400358.4,ENST00000480523.1,ENST00000400359.4	chr22	25263059:25263127:25264342:25264506:25264689:25264822,	25264343	25264506	25264377	25264377	Frame_Shift_Del	G	-	p.Q343fs
LIHC	TCGA-DD-A1EG-01	KIAA1671	ENST00000401395.1,ENST00000494730.2,ENST00000358431.3,ENST00000406486.4	chr22	25573314:25573489:25577665:25577790:25580943:25581086,	25577666	25577790	25577733	25577733	Frame_Shift_Del	T	-	p.P1714fs
LIHC	TCGA-DD-A1EG-01	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000343706.4,ENST00000404234.3,ENST00000360929.3,ENST00000403121.1	chr22	26692853:26693046:26694949:26695135:26701944:26702110,	26694950	26695135	26694991	26694991	Frame_Shift_Del	G	-	p.G402fs
LIHC	TCGA-DD-A1EG-01	TFIP11	ENST00000472918.1,ENST00000407148.1	chr22	26902843:26902894:26906029:26906247:26908064:26908141,	26906030	26906247	26906032	26906032	Frame_Shift_Del	T	-	p.K69fs
LIHC	TCGA-DD-A1EG-01	CHEK2	ENST00000425190.2,ENST00000439346.1,ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000402731.1,ENST00000491919.1,ENST00000464581.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000447421.1,ENST00000456369.1,ENST00000405598.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1,ENST00000433028.2	chr22	29095825:29095925:29099492:29099554:29105993:29106047,	29099493	29099554	29099525	29099525	Frame_Shift_Del	A	-	p.F71fs
LIHC	TCGA-DD-A1EG-01	CHEK2	ENST00000425190.2,ENST00000439346.1,ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000402731.1,ENST00000491919.1,ENST00000464581.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000447421.1,ENST00000456369.1,ENST00000405598.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1,ENST00000433028.2	chr22	29095825:29095925:29099492:29099554:29105993:29106047,	29099493	29099554	29099532	29099532	Frame_Shift_Del	T	-	p.N69fs
LIHC	TCGA-DD-A1EG-01	HSCB	ENST00000216027.3,ENST00000483861.1,ENST00000450178.1	chr22	29140602:29140697:29141851:29141996:29147228:29147276,29140602:29140692:29141851:29141996:29147228:29147276,	29141852	29141996	29141937	29141937	Frame_Shift_Del	A	-	p.E170fs
LIHC	TCGA-DD-A1EG-01	EWSR1	ENST00000397938.2,ENST00000333395.6,ENST00000331029.7,ENST00000437155.2,ENST00000483415.1,ENST00000406548.1,ENST00000332050.6	chr22	29669729:29669853:29674018:29674205:29678378:29678413,	29674019	29674205	29674037	29674037	Frame_Shift_Del	C	-	p.A82fs
LIHC	TCGA-DD-A1EG-01	EWSR1	ENST00000332035.6,ENST00000455726.1	chr22	29674119:29674205:29682911:29683123:29684594:29684668,	29682912	29683123	29683054	29683054	Frame_Shift_Del	C	-	p.P242fs
LIHC	TCGA-DD-A1EG-01	ASCC2	ENST00000542393.1,ENST00000307790.3,ENST00000397771.2,ENST00000487486.1	chr22	30189575:30189665:30196979:30197099:30197982:30198197,	30196980	30197099	30197074	30197074	Frame_Shift_Del	G	-	p.L533fs
LIHC	TCGA-DD-A1EG-01	SF3A1	ENST00000439242.1,ENST00000215793.8	chr22	30733014:30733169:30733678:30733886:30734777:30735023,	30733679	30733886	30733828	30733828	Frame_Shift_Del	G	-	p.P536fs
LIHC	TCGA-DD-A1EG-01	CCDC157	ENST00000338306.3,ENST00000405659.1,ENST00000475975.1	chr22	30767638:30767716:30768063:30768275:30769585:30769753,	30768064	30768275	30768089	30768089	Frame_Shift_Del	G	-	p.E384fs
LIHC	TCGA-DD-A1EG-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888035:30888142:30888460:30888544:30890136:30890197,	30888461	30888544	30888524	30888524	Frame_Shift_Del	C	-	p.A147fs
LIHC	TCGA-DD-A1EG-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888460:30888544:30890136:30890197:30890852:30890948,	30890137	30890197	30890192	30890192	Frame_Shift_Del	A	-	p.F121fs
LIHC	TCGA-DD-A1EG-01	SEC14L6	ENST00000437871.1,ENST00000402034.2	chr22	30921597:30921737:30921812:30921919:30925073:30925150,	30921813	30921919	30921840	30921840	Frame_Shift_Del	G	-	p.P248fs
LIHC	TCGA-DD-A1EG-01	SEC14L6	ENST00000437871.1,ENST00000402034.2	chr22	30921597:30921737:30921812:30921919:30925073:30925150,	30921813	30921919	30921861	30921861	Frame_Shift_Del	A	-	p.F241fs
LIHC	TCGA-DD-A1EG-01	OSBP2	ENST00000453621.1,ENST00000535268.1,ENST00000452656.1,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31285166:31285221:31285476:31285623:31286714:31286952,	31285477	31285623	31285540	31285540	Frame_Shift_Del	C	-	p.P514fs
LIHC	TCGA-DD-A1EG-01	OSBP2	ENST00000453621.1,ENST00000535268.1,ENST00000452656.1,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31285166:31285221:31285476:31285623:31286714:31286952,	31285477	31285623	31285598	31285598	Frame_Shift_Del	G	-	p.R533fs
LIHC	TCGA-DD-A1EG-01	SMTN	ENST00000347557.2,ENST00000489337.1,ENST00000358743.1,ENST00000460658.1,ENST00000466272.1,ENST00000333137.7	chr22	31486093:31486166:31486793:31486865:31486946:31487013,	31486794	31486865	31486840	31486840	Frame_Shift_Del	C	-	p.S304fs
LIHC	TCGA-DD-A1EG-01	DRG1	ENST00000433341.1,ENST00000416465.1	chr22	31806997:31807067:31816241:31816411:31819265:31819305,31806997:31807067:31816241:31816411:31817293:31817385,	31816242	31816411	31816314	31816314	Frame_Shift_Del	A	-	p.E162fs
LIHC	TCGA-DD-A1EG-01	EIF4ENIF1	ENST00000397525.1,ENST00000397523.1,ENST00000330125.5	chr22	31858917:31859119:31859666:31859953:31864160:31864288,	31859667	31859953	31859717	31859717	Frame_Shift_Del	C	-	p.D179fs
LIHC	TCGA-DD-A1EG-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000382111.2,ENST00000433147.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32241003:32241223:32242819:32242953:32253430:32253539,	32242820	32242953	32242870	32242870	Frame_Shift_Del	T	-	p.H1024fs
LIHC	TCGA-DD-A1EG-01	FBXO7	ENST00000397426.1	chr22	32871243:32871385:32874967:32875262:32879883:32879970,	32874968	32875262	32875044	32875044	Frame_Shift_Del	G	-	p.G67fs
LIHC	TCGA-DD-A1EG-01	TOM1	ENST00000491987.1	chr22	35728973:35729007:35729167:35729490:35730320:35730441,	35729168	35729490	35729484	35729484	Frame_Shift_Del	G	-	p.G341fs
LIHC	TCGA-DD-A1EG-01	TOM1	ENST00000436462.2,ENST00000382034.5,ENST00000404284.2,ENST00000449058.2,ENST00000447733.1,ENST00000411850.1,ENST00000424387.1,ENST00000425375.1	chr22	35728973:35729007:35729396:35729490:35730320:35730441,	35729397	35729490	35729484	35729484	Frame_Shift_Del	G	-	p.G341fs
LIHC	TCGA-DD-A1EG-01	MB	ENST00000419229.1	chr22	36007016:36007153:36013209:36013312:36019237:36019401,36007016:36007153:36013209:36013312:36018524:36018571,36007016:36007153:36013209:36013312:36018012:36018143,	36013210	36013312	36013257	36013257	Frame_Shift_Del	C	-	p.G16fs
LIHC	TCGA-DD-A1EG-01	MYH9	ENST00000216181.5	chr22	36715584:36715680:36716264:36716408:36716842:36716941,	36716265	36716408	36716330	36716330	Frame_Shift_Del	T	-	p.K316fs
LIHC	TCGA-DD-A1EG-01	FOXRED2	ENST00000216187.6,ENST00000397223.4,ENST00000397224.4	chr22	36897287:36897454:36900144:36900414:36900561:36900813,	36900145	36900414	36900216	36900216	Frame_Shift_Del	A	-	p.F326fs
LIHC	TCGA-DD-A1EG-01	EIF3D	ENST00000455547.1,ENST00000541106.1,ENST00000457241.1,ENST00000405442.1,ENST00000216190.8	chr22	36916679:36916735:36919255:36919328:36919941:36920025,	36919256	36919328	36919305	36919305	Frame_Shift_Del	T	-	p.K139fs
LIHC	TCGA-DD-A1EG-01	IFT27	ENST00000453009.2,ENST00000433985.2,ENST00000495555.2,ENST00000340630.5	chr22	37154254:37154453:37158947:37159057:37159962:37160080,	37158948	37159057	37158951	37158951	Frame_Shift_Del	G	-	p.S152fs
LIHC	TCGA-DD-A1EG-01	CSF2RB	ENST00000406230.1,ENST00000262825.5,ENST00000536485.1,ENST00000403662.3	chr22	37331671:37331729:37332590:37332694:37333418:37334653,	37332591	37332694	37332648	37332648	Frame_Shift_Del	C	-	p.P515fs
LIHC	TCGA-DD-A1EG-01	EIF3L	ENST00000477256.1,ENST00000412331.2,ENST00000482600.1,ENST00000406934.1,ENST00000381683.6	chr22	38266182:38266354:38270376:38270531:38271847:38272018,	38270377	38270531	38270397	38270397	Frame_Shift_Del	G	-	p.G258fs
LIHC	TCGA-DD-A1EG-01	MICALL1	ENST00000454685.1	chr22	38321853:38322050:38323417:38323827:38327805:38327940,	38323418	38323827	38323642	38323642	Frame_Shift_Del	G	-	p.G564fs
LIHC	TCGA-DD-A1EG-01	MICALL1	ENST00000215957.6	chr22	38321853:38322050:38323417:38323833:38327805:38327940,	38323418	38323833	38323642	38323642	Frame_Shift_Del	G	-	p.G564fs
LIHC	TCGA-DD-A1EG-01	C22orf23	ENST00000249079.2,ENST00000403305.1,ENST00000403026.1,ENST00000422191.1,ENST00000418863.1	chr22	38341167:38341180:38343287:38343470:38347466:38347529,	38343288	38343470	38343458	38343458	Frame_Shift_Del	A	-	p.L60fs
LIHC	TCGA-DD-A1EG-01	POLR2F	ENST00000407936.1,ENST00000606538.1,ENST00000443002.1,ENST00000405557.1,ENST00000484894.1,ENST00000470701.1,ENST00000442738.2	chr22	38352779:38352908:38355352:38355483:38363105:38363177,38352779:38352849:38355352:38355483:38363105:38363177,	38355353	38355483	38355465	38355465	Frame_Shift_Del	C	-	p.T68fs
LIHC	TCGA-DD-A1EG-01	SOX10	ENST00000396884.2,ENST00000360880.2	chr22	38374088:38374142:38379363:38379875:38380345:38380415,	38379364	38379875	38379376	38379376	Frame_Shift_Del	C	-	p.G139fs
LIHC	TCGA-DD-A1EG-01	SOX10	ENST00000396884.2,ENST00000360880.2	chr22	38374088:38374142:38379363:38379875:38380345:38380415,	38379364	38379875	38379585	38379585	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-DD-A1EG-01	PLA2G6	ENST00000436218.1,ENST00000471636.1,ENST00000402064.1	chr22	38541630:38541660:38565224:38565478:38577790:38577815,	38565225	38565478	38565320	38565320	Frame_Shift_Del	A	-	p.V38fs
LIHC	TCGA-DD-A1EG-01	TMEM184B	ENST00000361684.4,ENST00000436674.1,ENST00000361906.3	chr22	38620791:38620986:38621430:38621600:38622785:38622877,	38621431	38621600	38621483	38621483	Frame_Shift_Del	G	-	p.P245fs
LIHC	TCGA-DD-A1EG-01	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000396821.3,ENST00000432525.1,ENST00000381633.3	chr22	38890634:38890807:38890890:38891051:38891800:38891942,	38890891	38891051	38890927	38890927	Frame_Shift_Del	A	-	p.F335fs
LIHC	TCGA-DD-A1EG-01	FAM227A	ENST00000406767.2,ENST00000540952.1,ENST00000355830.6	chr22	38982069:38982204:38987365:38987545:38993208:38993360,	38987366	38987545	38987408	38987408	Frame_Shift_Del	C	-	p.G552fs
LIHC	TCGA-DD-A1EG-01	FAM227A	ENST00000406767.2,ENST00000540952.1,ENST00000355830.6	chr22	38982069:38982204:38987365:38987545:38993208:38993360,	38987366	38987545	38987413	38987413	Frame_Shift_Del	A	-	p.F550fs
LIHC	TCGA-DD-A1EG-01	FAM227A	ENST00000406767.2,ENST00000540952.1,ENST00000355830.6	chr22	38982069:38982204:38987365:38987545:38993208:38993360,	38987366	38987545	38987504	38987504	Frame_Shift_Del	T	-	p.K525fs
LIHC	TCGA-DD-A1EG-01	FAM227A	ENST00000535113.1	chr22	38982069:38982204:38987439:38987545:38993208:38993360,	38987440	38987545	38987504	38987504	Frame_Shift_Del	T	-	p.K525fs
LIHC	TCGA-DD-A1EG-01	APOBEC3B	ENST00000407298.3,ENST00000333467.3,ENST00000335760.5	chr22	39387411:39387631:39388038:39388154:39388435:39388551,	39388039	39388154	39388054	39388054	Frame_Shift_Del	G	-	p.W345fs
LIHC	TCGA-DD-A1EG-01	ATF4	ENST00000396680.1,ENST00000404241.2	chr22	39916568:39916756:39917358:39917676:39917777:39917962,	39917359	39917676	39917525	39917525	Frame_Shift_Del	G	-	p.L25fs
LIHC	TCGA-DD-A1EG-01	ENTHD1	ENST00000325157.6	chr22	40139048:40140288:40161227:40161614:40216997:40217118,	40161228	40161614	40161465	40161465	Frame_Shift_Del	T	-	p.T328fs
LIHC	TCGA-DD-A1EG-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661434	40661434	Frame_Shift_Del	G	-	p.L400fs
LIHC	TCGA-DD-A1EG-01	TNRC6B	ENST00000454349.2	chr22	40675998:40676147:40677122:40677293:40681648:40681774,	40677123	40677293	40677159	40677159	Frame_Shift_Del	G	-	p.G1150fs
LIHC	TCGA-DD-A1EG-01	SLC25A17	ENST00000412879.1	chr22	41175081:41175129:41195026:41195087:41215198:41215291,41190517:41190584:41195026:41195087:41215198:41215291,41188535:41188680:41195026:41195087:41215198:41215291,	41195027	41195087	41195058	41195058	Frame_Shift_Del	A	-	p.F28fs
LIHC	TCGA-DD-A1EG-01	XPNPEP3	ENST00000414396.1,ENST00000357137.4,ENST00000541156.1	chr22	41253134:41253249:41265002:41265119:41277773:41277928,	41265003	41265119	41265074	41265074	Frame_Shift_Del	T	-	p.L46fs
LIHC	TCGA-DD-A1EG-01	RANGAP1	ENST00000407260.4,ENST00000455915.2,ENST00000446258.1,ENST00000356244.3,ENST00000405486.1	chr22	41652194:41652294:41652714:41652828:41653951:41654110,	41652715	41652828	41652786	41652786	Frame_Shift_Del	C	-	p.D273fs
LIHC	TCGA-DD-A1EG-01	ZC3H7B	ENST00000352645.4,ENST00000351589.4	chr22	41738536:41738632:41739418:41739580:41742006:41742212,	41739419	41739580	41739538	41739538	Frame_Shift_Del	C	-	p.P473fs
LIHC	TCGA-DD-A1EG-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42049532:42049694:42052906:42053036:42054255:42054356,	42052907	42053036	42052930	42052930	Frame_Shift_Del	T	-	p.F439fs
LIHC	TCGA-DD-A1EG-01	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42263108	42263108	Frame_Shift_Del	T	-	p.V121fs
LIHC	TCGA-DD-A1EG-01	SREBF2	ENST00000361204.4,ENST00000424354.1	chr22	42271546:42271728:42273232:42273425:42273945:42274127,	42273233	42273425	42273331	42273331	Frame_Shift_Del	C	-	p.N495fs
LIHC	TCGA-DD-A1EG-01	SREBF2	ENST00000361204.4,ENST00000435061.1	chr22	42294679:42294785:42296333:42296502:42298973:42299007,	42296334	42296502	42296492	42296492	Frame_Shift_Del	C	-	p.A966fs
LIHC	TCGA-DD-A1EG-01	SREBF2	ENST00000361204.4,ENST00000424354.1,ENST00000491541.1	chr22	42296369:42296502:42298973:42299159:42300866:42300977,	42298974	42299159	42299029	42299029	Frame_Shift_Del	A	-	p.Q988fs
LIHC	TCGA-DD-A1EG-01	POLDIP3	ENST00000451060.2	chr22	42983511:42983578:42987960:42988090:42991542:42991609,42981892:42981974:42987960:42988090:42991542:42991609,	42987961	42988090	42988011	42988011	Frame_Shift_Del	T	-	p.K324fs
LIHC	TCGA-DD-A1EG-01	ARFGAP3	ENST00000437119.2,ENST00000263245.5,ENST00000429508.2	chr22	43203079:43203169:43204772:43204896:43206818:43206950,	43204773	43204896	43204794	43204794	Frame_Shift_Del	A	-	p.F433fs
LIHC	TCGA-DD-A1EG-01	ARFGAP3	ENST00000437119.2,ENST00000263245.5	chr22	43222945:43223005:43227554:43227642:43230247:43230331,	43227555	43227642	43227563	43227563	Frame_Shift_Del	T	-	p.N187fs
LIHC	TCGA-DD-A1EG-01	TTLL1	ENST00000331018.7,ENST00000266254.7	chr22	43465641:43465850:43471479:43471596:43475907:43475992,	43471480	43471596	43471484	43471484	Frame_Shift_Del	A	-	p.Y37fs
LIHC	TCGA-DD-A1EG-01	TSPO	ENST00000583777.1,ENST00000396265.3	chr22	43547578:43547610:43557057:43557196:43558808:43559216,	43557058	43557196	43557161	43557161	Frame_Shift_Del	C	-	p.P97fs
LIHC	TCGA-DD-A1EG-01	TSPO	ENST00000583777.1,ENST00000396265.3	chr22	43547578:43547610:43557057:43557196:43558808:43559216,	43557058	43557196	43557186	43557186	Frame_Shift_Del	A	-	p.Q104fs
LIHC	TCGA-DD-A1EG-01	MPPED1	ENST00000443721.1,ENST00000334209.5	chr22	43808019:43808164:43820913:43821215:43830953:43831087,	43820914	43821215	43821080	43821080	Frame_Shift_Del	C	-	p.S30fs
LIHC	TCGA-DD-A1EG-01	NUP50	ENST00000396096.2,ENST00000347635.4,ENST00000407019.2	chr22	45567480:45567564:45574118:45574781:45577166:45577248,45571774:45571961:45574118:45574781:45577166:45577248,	45574119	45574781	45574484	45574484	Frame_Shift_Del	T	-	p.F236fs
LIHC	TCGA-DD-A1EG-01	UPK3A	ENST00000216211.4	chr22	45681821:45681977:45683052:45683332:45684941:45685024,	45683053	45683332	45683127	45683127	Frame_Shift_Del	G	-	p.G95fs
LIHC	TCGA-DD-A1EG-01	SMC1B	ENST00000357450.4	chr22	45745608:45745678:45748330:45748482:45749857:45750012,	45748331	45748482	45748376	45748376	Frame_Shift_Del	C	-	p.G1127fs
LIHC	TCGA-DD-A1EG-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45779346:45779493:45782746:45782926:45785591:45785777,	45782747	45782926	45782881	45782881	Frame_Shift_Del	T	-	p.M593fs
LIHC	TCGA-DD-A1EG-01	FBLN1	ENST00000348697.2,ENST00000340923.5,ENST00000327858.6,ENST00000442170.2,ENST00000262722.7,ENST00000402984.3	chr22	45942964:45943084:45944492:45944624:45946371:45946495,	45944493	45944624	45944578	45944578	Frame_Shift_Del	C	-	p.C509fs
LIHC	TCGA-DD-A1EG-01	ATXN10	ENST00000498009.1,ENST00000252934.5,ENST00000470722.1	chr22	46085591:46085783:46088875:46088958:46096161:46096202,	46088876	46088958	46088919	46088919	Frame_Shift_Del	T	-	p.F118fs
LIHC	TCGA-DD-A1EG-01	PPARA	ENST00000407236.1,ENST00000396000.2,ENST00000402126.1,ENST00000262735.5	chr22	46614159:46614298:46627688:46628136:46631029:46631277,46615708:46615911:46627688:46628136:46631029:46631277,	46627689	46628136	46627691	46627691	Frame_Shift_Del	T	-	p.P238fs
LIHC	TCGA-DD-A1EG-01	CDPF1	ENST00000314567.3,ENST00000381037.4	chr22	46643021:46643118:46644068:46644181:46646152:46646186,	46644069	46644181	46644086	46644086	Frame_Shift_Del	G	-	p.P32fs
LIHC	TCGA-DD-A1EG-01	TTC38	ENST00000422713.1,ENST00000381031.3,ENST00000421359.1	chr22	46669794:46669966:46671144:46671318:46674482:46674558,	46671145	46671318	46671215	46671215	Frame_Shift_Del	A	-	p.K146fs
LIHC	TCGA-DD-A1EG-01	ALG12	ENST00000330817.6	chr22	50303541:50303736:50304081:50304255:50307032:50307165,	50304082	50304255	50304224	50304224	Frame_Shift_Del	A	-	p.F109fs
LIHC	TCGA-DD-A1EG-01	CRELD2	ENST00000403427.3,ENST00000483652.1,ENST00000328268.4,ENST00000482956.1,ENST00000450207.1,ENST00000407217.3	chr22	50313803:50313895:50315232:50315409:50316259:50316355,	50315233	50315409	50315265	50315265	Frame_Shift_Del	G	-	p.G150fs
LIHC	TCGA-DD-A1EG-01	IL17REL	ENST00000389983.2,ENST00000341280.5	chr22	50436453:50436498:50436565:50436738:50437719:50437774,	50436566	50436738	50436613	50436613	Frame_Shift_Del	C	-	p.A243fs
LIHC	TCGA-DD-A1EG-01	MOV10L1	ENST00000395858.3,ENST00000262794.5,ENST00000545383.1,ENST00000395852.1,ENST00000540615.1	chr22	50588043:50588143:50589163:50589328:50591473:50591647,	50589164	50589328	50589269	50589269	Frame_Shift_Del	C	-	p.P945fs
LIHC	TCGA-DD-A1EG-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50717283:50717440:50718058:50718205:50718433:50718500,	50718059	50718205	50718092	50718092	Frame_Shift_Del	C	-	p.G1452fs
LIHC	TCGA-DD-A1EG-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50722595:50722642:50723001:50723094:50724228:50724272,	50723002	50723094	50723034	50723034	Frame_Shift_Del	C	-	p.E717fs
LIHC	TCGA-DD-A1EG-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50722595:50722642:50723001:50723094:50724228:50724272,	50723002	50723094	50723048	50723048	Frame_Shift_Del	G	-	p.P712fs
LIHC	TCGA-DD-A1EG-01	PPP6R2	ENST00000359139.3,ENST00000427222.2	chr22	50876602:50876727:50877027:50877191:50878129:50878286,50876602:50876727:50877027:50877191:50878126:50878286,	50877028	50877191	50877036	50877036	Frame_Shift_Del	C	-	p.A631fs
LIHC	TCGA-DD-A1EG-01	SBF1	ENST00000380817.3,ENST00000348911.6,ENST00000470434.1,ENST00000390679.3	chr22	50893444:50893571:50893652:50893838:50893909:50894011,	50893653	50893838	50893747	50893747	Frame_Shift_Del	C	-	p.G1487fs
LIHC	TCGA-DD-A1EG-01	NCAPH2	ENST00000395701.3,ENST00000395698.3,ENST00000523045.1,ENST00000299821.11,ENST00000420993.2	chr22	50956401:50956481:50956561:50956707:50957077:50957161,	50956562	50956707	50956684	50956684	Frame_Shift_Del	C	-	p.S208fs
LIHC	TCGA-DD-A1EG-01	NCAPH2	ENST00000395701.3,ENST00000523045.1,ENST00000299821.11,ENST00000420993.2	chr22	50957077:50957161:50957618:50957749:50959393:50959465,	50957619	50957749	50957651	50957651	Frame_Shift_Del	G	-	p.G256fs
LIHC	TCGA-DD-A1EG-01	NCAPH2	ENST00000395701.3,ENST00000420993.2	chr22	50960771:50960844:50960929:50960998:50961099:50961149,	50960930	50960998	50960935	50960935	Frame_Shift_Del	T	-	p.F438fs
LIHC	TCGA-DD-A1EG-01	NCAPH2	ENST00000299821.11	chr22	50960771:50960844:50960926:50960998:50961099:50961149,	50960927	50960998	50960935	50960935	Frame_Shift_Del	T	-	p.F438fs
LIHC	TCGA-DD-A1EG-01	SHANK3	ENST00000262795.3,ENST00000414786.2,ENST00000445220.2	chr22	51117739:51117856:51121767:51121845:51123012:51123079,	51121768	51121845	51121785	51121785	Frame_Shift_Del	C	-	p.V301fs
LIHC	TCGA-DD-A1EG-01	DHRSX	ENST00000334651.5	chrX	2137556:2139270:2161063:2161271:2184780:2184978,	2161064	2161271	2161076	2161076	Frame_Shift_Del	C	-	p.W264fs
LIHC	TCGA-DD-A1EG-01	DHRSX	ENST00000334651.5,ENST00000444280.1	chrX	2255871:2256040:2326785:2326854:2343237:2343345,2310394:2310515:2326785:2326854:2343237:2343345,2209542:2209644:2326785:2326854:2343237:2343345,	2326786	2326854	2326808	2326808	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-DD-A1EG-01	CD99	ENST00000381192.3,ENST00000381187.3	chrX	2641354:2641405:2644300:2644414:2651397:2651415,2641360:2641405:2644300:2644414:2656240:2656297,	2644301	2644414	2644324	2644324	Frame_Shift_Del	G	-	p.G129fs
LIHC	TCGA-DD-A1EG-01	XG	ENST00000426774.1,ENST00000419513.2,ENST00000381174.5	chrX	2726225:2726261:2729376:2729493:2732404:2732589,	2729377	2729493	2729390	2729390	Frame_Shift_Del	A	-	p.A142fs
LIHC	TCGA-DD-A1EG-01	PRKX	ENST00000262848.5,ENST00000425240.1	chrX	3539299:3539357:3544459:3544555:3559892:3560012,	3544460	3544555	3544540	3544540	Frame_Shift_Del	A	-	p.F245fs
LIHC	TCGA-DD-A1EG-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7894068	7894068	Frame_Shift_Del	T	-	p.K31fs
LIHC	TCGA-DD-A1EG-01	SHROOM2	ENST00000380913.3	chrX	9841691:9841843:9859016:9859148:9862397:9864738,	9859017	9859148	9859094	9859094	Frame_Shift_Del	C	-	p.S132fs
LIHC	TCGA-DD-A1EG-01	SHROOM2	ENST00000380913.3	chrX	9841691:9841843:9859016:9859148:9862397:9864738,	9859017	9859148	9859122	9859122	Frame_Shift_Del	T	-	p.P141fs
LIHC	TCGA-DD-A1EG-01	WWC3	ENST00000454666.1,ENST00000380861.4	chrX	10093063:10093150:10094153:10094346:10096027:10096201,	10094154	10094346	10094173	10094173	Frame_Shift_Del	C	-	p.P646fs
LIHC	TCGA-DD-A1EG-01	ARHGAP6	ENST00000495242.1,ENST00000380732.3,ENST00000534860.1,ENST00000303025.6,ENST00000380736.1,ENST00000413512.3,ENST00000337414.4,ENST00000380717.3,ENST00000380718.1,ENST00000489330.2	chrX	11204355:11204551:11206847:11207104:11215044:11215116,	11206848	11207104	11207018	11207018	Frame_Shift_Del	C	-	p.D303fs
LIHC	TCGA-DD-A1EG-01	FANCB	ENST00000452869.1,ENST00000324138.3,ENST00000398334.1	chrX	14871160:14871289:14875983:14876076:14877303:14877456,	14875984	14876076	14876029	14876029	Frame_Shift_Del	T	-	p.Q384fs
LIHC	TCGA-DD-A1EG-01	FANCB	ENST00000452869.1,ENST00000324138.3,ENST00000398334.1	chrX	14871160:14871289:14875983:14876076:14877303:14877456,	14875984	14876076	14876032	14876032	Frame_Shift_Del	T	-	p.K383fs
LIHC	TCGA-DD-A1EG-01	ASB9	ENST00000473862.1,ENST00000380488.4,ENST00000477346.2,ENST00000546332.1,ENST00000380485.3	chrX	15266865:15267057:15268551:15268686:15270375:15270439,	15268552	15268686	15268647	15268647	Frame_Shift_Del	C	-	p.G158fs
LIHC	TCGA-DD-A1EG-01	ASB9	ENST00000380483.3	chrX	15266865:15267057:15268551:15268656:15270375:15270439,	15268552	15268656	15268647	15268647	Frame_Shift_Del	C	-	p.G158fs
LIHC	TCGA-DD-A1EG-01	PIGA	ENST00000333590.4,ENST00000463173.1,ENST00000542278.1,ENST00000428964.1,ENST00000482148.1	chrX	15339822:15339894:15342786:15342993:15343141:15343222,	15342787	15342993	15342893	15342893	Frame_Shift_Del	T	-	p.K361fs
LIHC	TCGA-DD-A1EG-01	BMX	ENST00000342014.6,ENST00000348343.6,ENST00000357607.2	chrX	15549450:15549530:15552334:15552462:15554475:15554550,	15552335	15552462	15552413	15552413	Frame_Shift_Del	T	-	p.C366fs
LIHC	TCGA-DD-A1EG-01	SYAP1	ENST00000380155.3	chrX	16754288:16754355:16759838:16759912:16761823:16761963,	16759839	16759912	16759878	16759878	Frame_Shift_Del	A	-	p.E134fs
LIHC	TCGA-DD-A1EG-01	RBBP7	ENST00000380084.4,ENST00000444437.1,ENST00000404022.1,ENST00000380087.2	chrX	16870673:16870751:16870871:16870998:16871804:16871965,	16870872	16870998	16870890	16870890	Frame_Shift_Del	G	-	p.A289fs
LIHC	TCGA-DD-A1EG-01	REPS2	ENST00000357277.3,ENST00000380064.4,ENST00000303843.7	chrX	17070504:17070568:17072930:17073073:17080560:17080655,	17072931	17073073	17072966	17072966	Frame_Shift_Del	C	-	p.T336fs
LIHC	TCGA-DD-A1EG-01	REPS2	ENST00000380064.4	chrX	17086527:17086594:17088062:17088116:17121840:17121902,	17088063	17088116	17088094	17088094	Frame_Shift_Del	A	-	p.P437fs
LIHC	TCGA-DD-A1EG-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17743599	17743599	Frame_Shift_Del	C	-	p.A437fs
LIHC	TCGA-DD-A1EG-01	MAP3K15	ENST00000359173.3,ENST00000518578.1,ENST00000338883.4,ENST00000469203.2	chrX	19413198:19413326:19416343:19416477:19418693:19418781,	19416344	19416477	19416433	19416433	Frame_Shift_Del	C	-	p.G659fs
LIHC	TCGA-DD-A1EG-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560172	19560172	Frame_Shift_Del	G	-	p.P588fs
LIHC	TCGA-DD-A1EG-01	PHEX	ENST00000379374.4,ENST00000535894.1,ENST00000418858.3	chrX	22245623:22245728:22263449:22263526:22265967:22266209,	22263450	22263526	22263496	22263496	Frame_Shift_Del	A	-	p.Q706fs
LIHC	TCGA-DD-A1EG-01	SAT1	ENST00000379270.4	chrX	23801777:23801826:23801916:23802000:23803444:23803546,	23801917	23802000	23801945	23801945	Frame_Shift_Del	C	-	p.H49fs
LIHC	TCGA-DD-A1EG-01	EIF2S3	ENST00000253039.4	chrX	24084114:24084209:24086080:24086225:24089674:24089844,	24086081	24086225	24086213	24086213	Frame_Shift_Del	G	-	p.G335fs
LIHC	TCGA-DD-A1EG-01	EIF2S3	ENST00000253039.4	chrX	24089829:24089844:24091207:24091380:24094838:24095023,	24091208	24091380	24091341	24091341	Frame_Shift_Del	A	-	p.E439fs
LIHC	TCGA-DD-A1EG-01	GK	ENST00000481024.1,ENST00000378943.3,ENST00000378946.3,ENST00000427190.1,ENST00000378945.3	chrX	30718530:30718566:30718954:30719022:30725672:30725715,	30718955	30719022	30719015	30719015	Frame_Shift_Del	A	-	p.K276fs
LIHC	TCGA-DD-A1EG-01	DMD	ENST00000541735.1,ENST00000378702.4,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31139884:31140047:31144758:31144790:31152218:31152311,	31144759	31144790	31144778	31144778	Frame_Shift_Del	G	-	p.P3676fs
LIHC	TCGA-DD-A1EG-01	RPGR	ENST00000474584.1,ENST00000342811.3,ENST00000339363.3,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38182105:38182198:38182651:38182777:38186592:38186675,	38182652	38182777	38182732	38182732	Frame_Shift_Del	T	-	p.N26fs
LIHC	TCGA-DD-A1EG-01	RPGR	ENST00000474584.1,ENST00000342811.3,ENST00000339363.3,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38182105:38182198:38182651:38182777:38186592:38186675,	38182652	38182777	38182748	38182748	Frame_Shift_Del	T	-	p.S20fs
LIHC	TCGA-DD-A1EG-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41064555:41064746:41069761:41069935:41073820:41073962,	41069762	41069935	41069811	41069811	Frame_Shift_Del	T	-	p.F1690fs
LIHC	TCGA-DD-A1EG-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41084301:41084390:41088505:41088662:41088819:41089032,	41088506	41088662	41088586	41088586	Frame_Shift_Del	A	-	p.Q2381fs
LIHC	TCGA-DD-A1EG-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44913073:44913200:44918250:44918349:44918491:44918711,	44918251	44918349	44918283	44918283	Frame_Shift_Del	C	-	p.A303fs
LIHC	TCGA-DD-A1EG-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44913073:44913200:44918250:44918349:44918491:44918711,	44918251	44918349	44918312	44918312	Frame_Shift_Del	A	-	p.K313fs
LIHC	TCGA-DD-A1EG-01	UBA1	ENST00000377351.4,ENST00000335972.6,ENST00000442035.1,ENST00000412206.1	chrX	47058878:47059013:47060292:47060399:47060674:47060765,	47060293	47060399	47060312	47060312	Frame_Shift_Del	C	-	p.T167fs
LIHC	TCGA-DD-A1EG-01	UBA1	ENST00000490869.1	chrX	47062532:47062613:47062939:47063095:47065346:47065512,47062532:47062613:47062939:47063095:47065476:47065512,	47062940	47063095	47063003	47063003	Frame_Shift_Del	G	-	p.G495fs
LIHC	TCGA-DD-A1EG-01	CDK16	ENST00000462827.2,ENST00000520141.1,ENST00000523344.1,ENST00000518022.1,ENST00000428400.1,ENST00000357227.4,ENST00000457458.2,ENST00000276052.6	chrX	47086579:47086622:47086777:47086868:47087965:47088009,	47086778	47086868	47086840	47086840	Frame_Shift_Del	G	-	p.L455fs
LIHC	TCGA-DD-A1EG-01	ARAF	ENST00000377045.4	chrX	47424650:47424749:47426037:47426179:47426282:47426310,	47426038	47426179	47426071	47426071	Frame_Shift_Del	C	-	p.F197fs
LIHC	TCGA-DD-A1EG-01	ARAF	ENST00000377045.4	chrX	47424650:47424749:47426037:47426179:47426282:47426310,	47426038	47426179	47426094	47426094	Frame_Shift_Del	C	-	p.A205fs
LIHC	TCGA-DD-A1EG-01	ELK1	ENST00000376983.3,ENST00000247161.3,ENST00000592066.1	chrX	47496411:47496513:47497149:47497581:47498293:47498737,	47497150	47497581	47497452	47497452	Frame_Shift_Del	C	-	p.E262fs
LIHC	TCGA-DD-A1EG-01	SSX5	ENST00000403001.3,ENST00000376923.1,ENST00000311798.1,ENST00000347757.1	chrX	48047062:48047167:48049568:48049704:48051667:48051717,	48049569	48049704	48049673	48049673	Frame_Shift_Del	T	-	p.N162fs
LIHC	TCGA-DD-A1EG-01	SLC38A5	ENST00000376875.1,ENST00000317669.5,ENST00000376876.3	chrX	48319371:48319472:48320103:48320183:48320392:48320530,	48320104	48320183	48320124	48320124	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A1EG-01	SLC38A5	ENST00000416711.1,ENST00000497336.1,ENST00000441948.1,ENST00000440085.1,ENST00000413668.1,ENST00000429543.1,ENST00000376875.1,ENST00000488083.1,ENST00000317669.5,ENST00000376876.3	chrX	48324401:48324480:48324616:48324709:48325185:48325259,	48324617	48324709	48324660	48324660	Frame_Shift_Del	C	-	p.G123fs
LIHC	TCGA-DD-A1EG-01	EBP	ENST00000498425.1	chrX	48380256:48380295:48382141:48382460:48385376:48385413,	48382142	48382460	48382333	48382333	Frame_Shift_Del	G	-	p.L58fs
LIHC	TCGA-DD-A1EG-01	EBP	ENST00000276096.6	chrX	48380256:48380295:48382310:48382460:48385376:48385413,	48382311	48382460	48382333	48382333	Frame_Shift_Del	G	-	p.L58fs
LIHC	TCGA-DD-A1EG-01	EBP	ENST00000498425.1	chrX	48380256:48380295:48382141:48382460:48385376:48385413,	48382142	48382460	48382410	48382410	Frame_Shift_Del	T	-	p.V84fs
LIHC	TCGA-DD-A1EG-01	EBP	ENST00000276096.6	chrX	48380256:48380295:48382310:48382460:48385376:48385413,	48382311	48382460	48382410	48382410	Frame_Shift_Del	T	-	p.V84fs
LIHC	TCGA-DD-A1EG-01	GATA1	ENST00000376665.3	chrX	48644980:48645053:48649497:48649736:48650250:48650628,	48649498	48649736	48649611	48649611	Frame_Shift_Del	T	-	p.V32fs
LIHC	TCGA-DD-A1EG-01	PIM2	ENST00000376509.4	chrX	48771672:48771848:48772296:48772669:48775057:48775108,	48772297	48772669	48772330	48772330	Frame_Shift_Del	G	-	p.L189fs
LIHC	TCGA-DD-A1EG-01	PLP2	ENST00000376327.5	chrX	49028272:49028443:49029475:49029628:49029734:49029830,	49029476	49029628	49029564	49029564	Frame_Shift_Del	T	-	p.I62fs
LIHC	TCGA-DD-A1EG-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50053617	50053617	Frame_Shift_Del	C	-	p.L816fs
LIHC	TCGA-DD-A1EG-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000375695.2	chrX	51641209:51641289:51641380:51641423:51641676:51641724,	51641381	51641423	51641419	51641419	Frame_Shift_Del	C	-	p.P649fs
LIHC	TCGA-DD-A1EG-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53222963:53223033:53223320:53223920:53224112:53224250,	53223321	53223920	53223343	53223343	Frame_Shift_Del	C	-	p.G1272fs
LIHC	TCGA-DD-A1EG-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3,ENST00000497100.1	chrX	53239595:53239758:53239857:53240039:53240678:53240837,	53239858	53240039	53239862	53239862	Frame_Shift_Del	G	-	p.H460fs
LIHC	TCGA-DD-A1EG-01	PHF8	ENST00000338154.6,ENST00000357988.5,ENST00000396282.2,ENST00000322659.8,ENST00000443302.1	chrX	54019234:54019272:54020033:54020336:54022125:54022215,	54020034	54020336	54020258	54020258	Frame_Shift_Del	G	-	p.L468fs
LIHC	TCGA-DD-A1EG-01	FAM120C	ENST00000375180.2	chrX	54112147:54112349:54114187:54114397:54117744:54117859,	54114188	54114397	54114326	54114326	Frame_Shift_Del	A	-	p.F833fs
LIHC	TCGA-DD-A1EG-01	MAGED2	ENST00000218439.4,ENST00000396224.1,ENST00000375053.2,ENST00000497484.1,ENST00000375058.1,ENST00000375068.1	chrX	54835735:54835809:54836154:54836646:54837253:54837337,	54836155	54836646	54836283	54836283	Frame_Shift_Del	A	-	p.S58fs
LIHC	TCGA-DD-A1EG-01	APEX2	ENST00000471758.1	chrX	55028683:55028864:55029394:55029541:55030231:55030301,55027978:55028062:55029394:55029541:55030231:55030301,	55029395	55029541	55029465	55029465	Frame_Shift_Del	C	-	p.P165fs
LIHC	TCGA-DD-A1EG-01	FAAH2	ENST00000374900.4	chrX	57337025:57337162:57358030:57358240:57367703:57367823,	57358031	57358240	57358110	57358110	Frame_Shift_Del	G	-	p.K164fs
LIHC	TCGA-DD-A1EG-01	FAAH2	ENST00000374900.4	chrX	57405083:57405219:57407344:57407462:57458350:57458470,	57407345	57407462	57407415	57407415	Frame_Shift_Del	T	-	p.F317fs
LIHC	TCGA-DD-A1EG-01	ARHGEF9	ENST00000437457.2,ENST00000253401.6,ENST00000374878.1,ENST00000374872.1,ENST00000374870.4	chrX	62863875:62863928:62875373:62875617:62893917:62894018,62863875:62863928:62875373:62875617:62885765:62885897,	62875374	62875617	62875434	62875434	Frame_Shift_Del	T	-	p.I414fs
LIHC	TCGA-DD-A1EG-01	MSN	ENST00000360270.5,ENST00000609672.1	chrX	64936679:64936763:64947675:64947771:64949299:64949418,	64947676	64947771	64947689	64947689	Frame_Shift_Del	T	-	p.I37fs
LIHC	TCGA-DD-A1EG-01	MSN	ENST00000360270.5	chrX	64951699:64951846:64953045:64953142:64955128:64955292,	64953046	64953142	64953131	64953131	Frame_Shift_Del	A	-	p.K263fs
LIHC	TCGA-DD-A1EG-01	IGBP1	ENST00000356413.4,ENST00000342206.6	chrX	69354372:69354666:69366482:69366678:69368610:69368690,	69366483	69366678	69366641	69366641	Frame_Shift_Del	A	-	p.E214fs
LIHC	TCGA-DD-A1EG-01	KIF4A	ENST00000374403.3	chrX	69626108:69626204:69626742:69626925:69637737:69637854,	69626743	69626925	69626745	69626745	Frame_Shift_Del	A	-	p.P1025fs
LIHC	TCGA-DD-A1EG-01	GDPD2	ENST00000472623.1,ENST00000374382.3,ENST00000538649.1,ENST00000536730.1,ENST00000453994.2	chrX	69652428:69652511:69652761:69652790:69652883:69653230,	69652762	69652790	69652784	69652784	Frame_Shift_Del	A	-	p.K572fs
LIHC	TCGA-DD-A1EG-01	DLG3	ENST00000489733.1,ENST00000463252.1,ENST00000542398.1,ENST00000374355.3	chrX	69712370:69712446:69713225:69713325:69715257:69715303,69712370:69712446:69713225:69713325:69717029:69717071,	69713226	69713325	69713252	69713252	Frame_Shift_Del	T	-	p.S263fs
LIHC	TCGA-DD-A1EG-01	SLC7A3	ENST00000298085.4,ENST00000374299.3	chrX	70146724:70146891:70147131:70147234:70147333:70147473,	70147132	70147234	70147160	70147160	Frame_Shift_Del	G	-	p.L420fs
LIHC	TCGA-DD-A1EG-01	SLC7A3	ENST00000298085.4,ENST00000374299.3	chrX	70146724:70146891:70147131:70147234:70147333:70147473,	70147132	70147234	70147182	70147182	Frame_Shift_Del	A	-	p.I412fs
LIHC	TCGA-DD-A1EG-01	IL2RG	ENST00000456850.2,ENST00000374202.2,ENST00000276110.2	chrX	70328126:70328196:70328448:70328545:70329077:70329118,	70328449	70328545	70328500	70328500	Frame_Shift_Del	C	-	p.G268fs
LIHC	TCGA-DD-A1EG-01	MED12	ENST00000333646.6,ENST00000374102.1,ENST00000374080.3	chrX	70339863:70340020:70340820:70341002:70341176:70341287,	70340821	70341002	70340934	70340934	Frame_Shift_Del	C	-	p.P223fs
LIHC	TCGA-DD-A1EG-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387282	70387282	Frame_Shift_Del	G	-	p.E425fs
LIHC	TCGA-DD-A1EG-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387541	70387541	Frame_Shift_Del	G	-	p.G512fs
LIHC	TCGA-DD-A1EG-01	ZMYM3	ENST00000353904.2,ENST00000489332.1,ENST00000373998.1,ENST00000373988.1,ENST00000314425.5	chrX	70461076:70461194:70462019:70462274:70462819:70462934,	70462020	70462274	70462159	70462159	Frame_Shift_Del	C	-	p.G1209fs
LIHC	TCGA-DD-A1EG-01	ZMYM3	ENST00000353904.2,ENST00000489332.1,ENST00000373998.1,ENST00000373988.1,ENST00000314425.5	chrX	70461076:70461194:70462019:70462274:70462819:70462934,	70462020	70462274	70462162	70462162	Frame_Shift_Del	A	-	p.F1208fs
LIHC	TCGA-DD-A1EG-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470502	70470502	Frame_Shift_Del	G	-	p.R286fs
LIHC	TCGA-DD-A1EG-01	TAF1	ENST00000373790.4,ENST00000478305.1,ENST00000449580.1,ENST00000423759.1,ENST00000276072.3	chrX	70608086:70608228:70608587:70608718:70609434:70609480,	70608588	70608718	70608622	70608622	Frame_Shift_Del	T	-	p.D867fs
LIHC	TCGA-DD-A1EG-01	OGT	ENST00000488174.1,ENST00000373719.3,ENST00000373701.3	chrX	70782696:70782867:70782979:70783096:70783178:70783349,	70782980	70783096	70783055	70783055	Frame_Shift_Del	A	-	p.K742fs
LIHC	TCGA-DD-A1EG-01	HDAC8	ENST00000373573.3,ENST00000421523.1,ENST00000373571.1,ENST00000436675.1,ENST00000439122.2,ENST00000415409.1,ENST00000373561.4	chrX	71715043:71715118:71787738:71787880:71791906:71791959,71715005:71715118:71787738:71787880:71788603:71788734,	71787739	71787880	71787824	71787824	Frame_Shift_Del	C	-	p.A118fs
LIHC	TCGA-DD-A1EG-01	SLC16A2	ENST00000587091.1,ENST00000276033.5	chrX	73745584:73745728:73749047:73749276:73751167:73752443,	73749048	73749276	73749172	73749172	Frame_Shift_Del	C	-	p.A506fs
LIHC	TCGA-DD-A1EG-01	ABCB7	ENST00000529949.1,ENST00000339447.4,ENST00000534570.1,ENST00000253577.3,ENST00000373394.3	chrX	74288841:74288971:74289125:74289289:74290199:74290357,	74289126	74289289	74289176	74289176	Frame_Shift_Del	A	-	p.F494fs
LIHC	TCGA-DD-A1EG-01	ABCB7	ENST00000529949.1,ENST00000339447.4,ENST00000253577.3,ENST00000373394.3	chrX	74290199:74290357:74291343:74291518:74293523:74293611,	74291344	74291518	74291443	74291443	Frame_Shift_Del	T	-	p.S371fs
LIHC	TCGA-DD-A1EG-01	ABCB7	ENST00000529949.1,ENST00000339447.4,ENST00000253577.3,ENST00000373394.3	chrX	74290199:74290357:74291343:74291518:74293523:74293611,	74291344	74291518	74291472	74291472	Frame_Shift_Del	A	-	p.L361fs
LIHC	TCGA-DD-A1EG-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1,ENST00000400866.2	chrX	76872080:76872198:76874273:76874449:76875862:76876000,	76874274	76874449	76874316	76874316	Frame_Shift_Del	T	-	p.K1802fs
LIHC	TCGA-DD-A1EG-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937914	76937914	Frame_Shift_Del	T	-	p.K945fs
LIHC	TCGA-DD-A1EG-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938401	76938401	Frame_Shift_Del	T	-	p.S784fs
LIHC	TCGA-DD-A1EG-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938996	76938996	Frame_Shift_Del	T	-	p.K584fs
LIHC	TCGA-DD-A1EG-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77243737:77244227:77244728:77245454:77253974:77254181,	77244729	77245454	77245318	77245318	Frame_Shift_Del	A	-	p.S400fs
LIHC	TCGA-DD-A1EG-01	POF1B	ENST00000373145.3,ENST00000262753.4	chrX	84570712:84570740:84585954:84586085:84600865:84601003,	84585955	84586085	84586056	84586056	Frame_Shift_Del	T	-	p.K251fs
LIHC	TCGA-DD-A1EG-01	POF1B	ENST00000373145.3,ENST00000262753.4	chrX	84600865:84601048:84606355:84606457:84614554:84614635,	84606356	84606457	84606391	84606391	Frame_Shift_Del	T	-	p.T169fs
LIHC	TCGA-DD-A1EG-01	CHM	ENST00000358786.4,ENST00000357749.2	chrX	85233770:85233895:85236740:85236813:85282494:85282561,	85236741	85236813	85236773	85236773	Frame_Shift_Del	A	-	p.S53fs
LIHC	TCGA-DD-A1EG-01	CHM	ENST00000358786.4	chrX	85236740:85236813:85282494:85282561:85302487:85302539,	85282495	85282561	85282523	85282523	Frame_Shift_Del	T	-	p.S30fs
LIHC	TCGA-DD-A1EG-01	KLHL4	ENST00000373114.4,ENST00000373119.4	chrX	86872934:86873131:86877210:86877423:86880609:86880796,	86877211	86877423	86877378	86877378	Frame_Shift_Del	G	-	p.L364fs
LIHC	TCGA-DD-A1EG-01	TNMD	ENST00000373031.4	chrX	99852500:99852654:99854012:99854179:99854504:99854882,	99854013	99854179	99854107	99854107	Frame_Shift_Del	C	-	p.V224fs
LIHC	TCGA-DD-A1EG-01	SYTL4	ENST00000263033.5,ENST00000454200.2,ENST00000372989.1,ENST00000455616.1,ENST00000276141.6	chrX	99941675:99941778:99942063:99942242:99943347:99943440,	99942064	99942242	99942115	99942115	Frame_Shift_Del	T	-	p.K378fs
LIHC	TCGA-DD-A1EG-01	NOX1	ENST00000372960.4,ENST00000372966.3,ENST00000217885.5	chrX	100117159:100117292:100117380:100117562:100117657:100117809,	100117381	100117562	100117419	100117419	Frame_Shift_Del	A	-	p.F211fs
LIHC	TCGA-DD-A1EG-01	DRP2	ENST00000402866.1,ENST00000395209.3,ENST00000372916.4,ENST00000541709.1,ENST00000538510.1	chrX	100503502:100503588:100505411:100505569:100505905:100506072,	100505412	100505569	100505566	100505566	Frame_Shift_Del	T	-	p.R565fs
LIHC	TCGA-DD-A1EG-01	NXF3	ENST00000425644.1	chrX	102339269:102339423:102339642:102339811:102347923:102348022,	102339643	102339811	102339788	102339788	Frame_Shift_Del	T	-	p.R19fs
LIHC	TCGA-DD-A1EG-01	TMSB15B	ENST00000567181.1	chrX	103217247:103217296:103219078:103219195:103227463:103229570,	103219079	103219195	103219183	103219183	Frame_Shift_Del	C	-	p.P30fs
LIHC	TCGA-DD-A1EG-01	TBC1D8B	ENST00000357242.5,ENST00000276175.3	chrX	106112714:106112771:106113945:106114043:106116799:106117347,	106113946	106114043	106114031	106114031	Frame_Shift_Del	A	-	p.P985fs
LIHC	TCGA-DD-A1EG-01	PSMD10	ENST00000361815.5,ENST00000217958.3	chrX	107330274:107331082:107331182:107331329:107331981:107332080,	107331183	107331329	107331262	107331262	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A1EG-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000468338.1,ENST00000394872.2,ENST00000334504.7	chrX	107464469:107464604:107553977:107554058:107681171:107681223,	107553978	107554058	107553996	107553996	Frame_Shift_Del	A	-	p.F42fs
LIHC	TCGA-DD-A1EG-01	COL4A5	ENST00000328300.6,ENST00000361603.2	chrX	107816803:107816884:107819139:107819202:107821181:107821217,	107819140	107819202	107819194	107819194	Frame_Shift_Del	G	-	p.G201fs
LIHC	TCGA-DD-A1EG-01	AMMECR1	ENST00000372057.1	chrX	109459745:109459860:109507716:109507827:109560826:109560984,	109507717	109507827	109507733	109507733	Frame_Shift_Del	C	-	p.E190fs
LIHC	TCGA-DD-A1EG-01	ALG13	ENST00000394780.3,ENST00000486578.1,ENST00000470971.1,ENST00000251943.4,ENST00000436609.1,ENST00000460092.1	chrX	110970903:110970998:110971412:110971533:110973622:110973655,	110971413	110971533	110971496	110971496	Frame_Shift_Del	T	-	p.T777fs
LIHC	TCGA-DD-A1EG-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112065639	112065639	Frame_Shift_Del	G	-	p.P240fs
LIHC	TCGA-DD-A1EG-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112066109	112066109	Frame_Shift_Del	C	-	p.G82fs
LIHC	TCGA-DD-A1EG-01	LRCH2	ENST00000538422.1,ENST00000317135.8	chrX	114384584:114384633:114391164:114391230:114398238:114398346,	114391165	114391230	114391188	114391188	Frame_Shift_Del	T	-	p.K502fs
LIHC	TCGA-DD-A1EG-01	LUZP4	ENST00000371920.3	chrX	114536556:114536688:114537864:114537983:114540769:114542119,	114537865	114537983	114537909	114537909	Frame_Shift_Del	A	-	p.K91fs
LIHC	TCGA-DD-A1EG-01	PLS3	ENST00000537301.1,ENST00000481823.1,ENST00000355899.3,ENST00000420625.2,ENST00000539310.1,ENST00000289290.3	chrX	114868311:114868393:114869192:114869358:114871147:114871290,	114869193	114869358	114869290	114869290	Frame_Shift_Del	T	-	p.V227fs
LIHC	TCGA-DD-A1EG-01	SLC25A43	ENST00000493093.1,ENST00000217909.7	chrX	118544152:118544325:118585971:118586106:118586827:118586904,	118585972	118586106	118586070	118586070	Frame_Shift_Del	G	-	p.L263fs
LIHC	TCGA-DD-A1EG-01	SEPT6	ENST00000343984.5	chrX	118759297:118759342:118763280:118763471:118767322:118767387,118752675:118752749:118763280:118763471:118767322:118767387,	118763281	118763471	118763418	118763418	Frame_Shift_Del	T	-	p.K381fs
LIHC	TCGA-DD-A1EG-01	SEPT6	ENST00000489216.1,ENST00000394617.2,ENST00000394610.1,ENST00000460411.1,ENST00000360156.7,ENST00000354416.3,ENST00000343984.5,ENST00000394616.4,ENST00000354228.4	chrX	118774654:118774751:118783899:118784061:118786816:118787003,	118783900	118784061	118783989	118783989	Frame_Shift_Del	T	-	p.I201fs
LIHC	TCGA-DD-A1EG-01	MCTS1	ENST00000371317.5,ENST00000493274.1,ENST00000371315.3	chrX	119739933:119740031:119742079:119742213:119744865:119744902,	119742080	119742213	119742127	119742127	Frame_Shift_Del	T	-	p.F105fs
LIHC	TCGA-DD-A1EG-01	MCTS1	ENST00000487133.1	chrX	119739933:119740031:119742079:119742318:119744865:119744933,	119742080	119742318	119742127	119742127	Frame_Shift_Del	T	-	p.F105fs
LIHC	TCGA-DD-A1EG-01	GRIA3	ENST00000542149.1	chrX	122598715:122598963:122613913:122614028:122616649:122616897,122599524:122599639:122613913:122614028:122616649:122616897,	122613914	122614028	122613972	122613972	Frame_Shift_Del	A	-	p.K795fs
LIHC	TCGA-DD-A1EG-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122800956:122801129:122802009:122802165:122805519:122805612,	122802010	122802165	122802060	122802060	Frame_Shift_Del	T	-	p.M323fs
LIHC	TCGA-DD-A1EG-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000394477.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1,ENST00000394478.1	chrX	123156380:123156521:123159689:123159768:123164810:123164898,	123159690	123159768	123159741	123159741	Frame_Shift_Del	A	-	p.G32fs
LIHC	TCGA-DD-A1EG-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128633708:128633818:128638710:128638779:128640056:128640188,	128638711	128638779	128638751	128638751	Frame_Shift_Del	T	-	p.N376fs
LIHC	TCGA-DD-A1EG-01	ZDHHC9	ENST00000406492.2	chrX	128962956:128963117:128975754:128975932:128977671:128977860,	128975755	128975932	128975852	128975852	Frame_Shift_Del	A	-	p.C25fs
LIHC	TCGA-DD-A1EG-01	UTP14A	ENST00000394422.3,ENST00000371042.3,ENST00000425117.2,ENST00000371051.5	chrX	129058770:129059171:129059894:129060088:129060215:129060315,	129059895	129060088	129060037	129060037	Frame_Shift_Del	G	-	p.W631fs
LIHC	TCGA-DD-A1EG-01	RBMX2	ENST00000305536.6,ENST00000469953.1	chrX	129536228:129536344:129537775:129537827:129543230:129543360,	129537776	129537827	129537778	129537778	Frame_Shift_Del	G	-	p.G42fs
LIHC	TCGA-DD-A1EG-01	ENOX2	ENST00000370935.1,ENST00000394363.1,ENST00000338144.3,ENST00000370927.1,ENST00000432489.1	chrX	129803938:129804172:129813515:129813722:129822836:129822992,	129813516	129813722	129813650	129813650	Frame_Shift_Del	T	-	p.N138fs
LIHC	TCGA-DD-A1EG-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130409952:130410222:130410912:130411200:130411829:130412108,	130410913	130411200	130411036	130411036	Frame_Shift_Del	C	-	p.A820fs
LIHC	TCGA-DD-A1EG-01	GPC4	ENST00000535467.1,ENST00000370828.3	chrX	132439799:132439946:132440051:132440182:132445285:132445451,	132440052	132440182	132440143	132440143	Frame_Shift_Del	A	-	p.F306fs
LIHC	TCGA-DD-A1EG-01	GPC3	ENST00000370818.3,ENST00000406757.2,ENST00000394299.2,ENST00000543339.1	chrX	132795757:132795878:132826396:132826522:132833922:132834056,	132826397	132826522	132826508	132826508	Frame_Shift_Del	T	-	p.K394fs
LIHC	TCGA-DD-A1EG-01	ZNF75D	ENST00000370766.3	chrX	134426206:134426399:134427655:134428184:134429693:134429848,	134427656	134428184	134427844	134427844	Frame_Shift_Del	G	-	p.H75fs
LIHC	TCGA-DD-A1EG-01	ZNF75D	ENST00000370766.3	chrX	134426206:134426399:134427655:134428184:134429693:134429848,	134427656	134428184	134427949	134427949	Frame_Shift_Del	T	-	p.I40fs
LIHC	TCGA-DD-A1EG-01	RBMX	ENST00000565438.1,ENST00000419968.2,ENST00000562646.1,ENST00000320676.7	chrX	135957629:135957744:135958661:135958814:135961175:135961282,135957629:135957744:135958661:135958814:135960073:135960123,	135958662	135958814	135958727	135958727	Frame_Shift_Del	C	-	p.G159fs
LIHC	TCGA-DD-A1EG-01	F9	ENST00000394090.2	chrX	138623245:138623348:138630521:138630650:138633220:138633406,138619520:138619545:138630521:138630650:138633220:138633406,	138630522	138630650	138630566	138630566	Frame_Shift_Del	A	-	p.K146fs
LIHC	TCGA-DD-A1EG-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000450801.1,ENST00000370557.1,ENST00000327569.3,ENST00000433868.1,ENST00000359686.2	chrX	138823149:138823253:138825717:138825783:138827880:138827950,	138825718	138825783	138825748	138825748	Frame_Shift_Del	A	-	p.F997fs
LIHC	TCGA-DD-A1EG-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2,ENST00000471746.1	chrX	138850418:138850593:138856848:138857112:138864705:138864792,	138856849	138857112	138856962	138856962	Frame_Shift_Del	G	-	p.T702fs
LIHC	TCGA-DD-A1EG-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138867384:138867458:138869331:138869403:138870350:138870502,	138869332	138869403	138869386	138869386	Frame_Shift_Del	A	-	p.L513fs
LIHC	TCGA-DD-A1EG-01	FMR1	ENST00000370477.1,ENST00000334557.6,ENST00000370470.1,ENST00000370471.3,ENST00000439526.2,ENST00000370475.4,ENST00000218200.8	chrX	147007057:147007151:147009839:147009911:147010176:147010325,	147009840	147009911	147009859	147009859	Frame_Shift_Del	A	-	p.E73fs
LIHC	TCGA-DD-A1EG-01	MAMLD1	ENST00000262858.5,ENST00000370401.2,ENST00000426613.2	chrX	149639693:149639762:149671543:149671787:149678231:149678316,149641951:149642074:149671543:149671787:149678231:149678316,	149671544	149671787	149671661	149671661	Frame_Shift_Del	T	-	p.F720fs
LIHC	TCGA-DD-A1EG-01	NSDHL	ENST00000370274.3,ENST00000432467.1,ENST00000440023.1	chrX	152014825:152014976:152018808:152018967:152027313:152027460,	152018809	152018967	152018832	152018832	Frame_Shift_Del	T	-	p.G45fs
LIHC	TCGA-DD-A1EG-01	NSDHL	ENST00000370274.3,ENST00000432467.1,ENST00000440023.1	chrX	152014825:152014976:152018808:152018967:152027313:152027460,	152018809	152018967	152018946	152018946	Frame_Shift_Del	G	-	p.L82fs
LIHC	TCGA-DD-A1EG-01	ZNF185	ENST00000370270.2,ENST00000318529.8,ENST00000535861.1,ENST00000324823.6,ENST00000449285.2,ENST00000370268.4,ENST00000539731.1,ENST00000436731.2,ENST00000426821.2,ENST00000318504.7	chrX	152106623:152106707:152113810:152114008:152128242:152128385,	152113811	152114008	152113817	152113817	Frame_Shift_Del	G	-	p.L437fs
LIHC	TCGA-DD-A1EG-01	SLC6A8	ENST00000442457.1,ENST00000430077.2,ENST00000253122.5	chrX	152959410:152959472:152959584:152959722:152959798:152959875,	152959585	152959722	152959658	152959658	Frame_Shift_Del	G	-	p.R443fs
LIHC	TCGA-DD-A1EG-01	PLXNB3	ENST00000538966.1	chrX	153030956:153031035:153031613:153031779:153032327:153033368,	153031614	153031779	153031731	153031731	Frame_Shift_Del	C	-	p.F22fs
LIHC	TCGA-DD-A1EG-01	PLXNB3	ENST00000538282.1	chrX	153030956:153031035:153033703:153033883:153034402:153034531,153030956:153031035:153033703:153033883:153034616:153034717,	153033704	153033883	153033856	153033856	Frame_Shift_Del	G	-	p.L436fs
LIHC	TCGA-DD-A1EG-01	IDH3G	ENST00000427365.2	chrX	153055649:153055747:153056250:153056306:153059700:153059780,	153056251	153056306	153056267	153056267	Frame_Shift_Del	A	-	p.S41fs
LIHC	TCGA-DD-A1EG-01	IDH3G	ENST00000217901.5,ENST00000491235.1,ENST00000495356.1,ENST00000370093.1	chrX	153056018:153056030:153056264:153056306:153059700:153059780,	153056265	153056306	153056267	153056267	Frame_Shift_Del	A	-	p.S41fs
LIHC	TCGA-DD-A1EG-01	IDH3G	ENST00000497043.1	chrX	153056018:153056030:153056264:153056426:153059700:153059780,	153056265	153056426	153056267	153056267	Frame_Shift_Del	A	-	p.S41fs
LIHC	TCGA-DD-A1EG-01	RENBP	ENST00000369997.3,ENST00000423624.1,ENST00000393700.3	chrX	153207025:153207106:153207402:153207484:153208306:153208486,	153207403	153207484	153207447	153207447	Frame_Shift_Del	C	-	p.G243fs
LIHC	TCGA-DD-A1EG-01	HCFC1	ENST00000354233.3,ENST00000310441.7,ENST00000369984.4	chrX	153219516:153220993:153221641:153221862:153222075:153222214,	153221642	153221862	153221757	153221757	Frame_Shift_Del	C	-	p.G914fs
LIHC	TCGA-DD-A1EG-01	HCFC1	ENST00000310441.7,ENST00000369984.4	chrX	153224781:153224942:153225252:153225612:153225685:153225865,	153225253	153225612	153225338	153225338	Frame_Shift_Del	G	-	p.P453fs
LIHC	TCGA-DD-A1EG-01	FLNA	ENST00000498491.1	chrX	153578398:153578575:153579276:153579409:153579948:153580064,153578398:153578575:153579276:153579409:153579507:153579571,	153579277	153579409	153579310	153579310	Frame_Shift_Del	G	-	p.L2367fs
LIHC	TCGA-DD-A1EG-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153588135:153588273:153588357:153588955:153589675:153589938,	153588358	153588955	153588717	153588717	Frame_Shift_Del	G	-	p.P1149fs
LIHC	TCGA-DD-A1EG-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153589675:153589938:153590037:153590155:153590346:153590516,	153590038	153590155	153590127	153590127	Frame_Shift_Del	C	-	p.G953fs
LIHC	TCGA-DD-A1EG-01	FLNA	ENST00000369850.3,ENST00000422373.1	chrX	153596209:153596458:153599240:153599729:153602873:153602994,	153599241	153599729	153599486	153599486	Frame_Shift_Del	T	-	p.K43fs
LIHC	TCGA-DD-A1EG-01	TAZ	ENST00000476679.1,ENST00000299328.5,ENST00000426231.1,ENST00000351413.4	chrX	153641865:153641904:153642437:153642527:153647881:153647962,	153642438	153642527	153642446	153642446	Frame_Shift_Del	T	-	p.F128fs
LIHC	TCGA-DD-A1EG-01	TAZ	ENST00000369776.4	chrX	153647884:153647962:153648370:153648603:153648996:153649023,	153648371	153648603	153648474	153648474	Frame_Shift_Del	G	-	p.V160fs
LIHC	TCGA-DD-A1EG-01	FUNDC2	ENST00000484175.1,ENST00000475165.1,ENST00000369498.3	chrX	154261700:154261828:154274783:154274859:154279944:154280007,	154274784	154274859	154274845	154274845	Frame_Shift_Del	T	-	p.F117fs
LIHC	TCGA-DD-A1EG-01	KDM5D	ENST00000382806.2	chrY	21897506:21897636:21901413:21901548:21903203:21903374,21897506:21897636:21901413:21901548:21903620:21903743,	21901414	21901548	21901428	21901428	Frame_Shift_Del	T	-	p.R215fs
LIHC	TCGA-DD-A1EG-01	KDM5D	ENST00000447300.1	chrY	21901413:21901548:21903203:21903374:21903620:21903743,21897506:21897636:21903203:21903374:21903620:21903743,	21903204	21903374	21903283	21903283	Frame_Shift_Del	T	-	p.N148fs
LIHC	TCGA-DD-A1EG-01	DVL1	ENST00000378891.5,ENST00000378888.5,ENST00000472445.1	chr1	1277432:1277536:1277742:1277864:1278068:1278138,	1277743	1277864	1277825	1277825	Frame_Shift_Del	G	-	p.Q94fs
LIHC	TCGA-DD-A1EG-01	GNB1	ENST00000439272.2	chr1	1737913:1737977:1747194:1747301:1749275:1749314,1737913:1737977:1747194:1747301:1756835:1756938,	1747195	1747301	1747239	1747239	Frame_Shift_Del	C	-	p.G53fs
LIHC	TCGA-DD-A1EG-01	NOL9	ENST00000377705.5	chr1	6604885:6604982:6605104:6605240:6609630:6609758,	6605105	6605240	6605171	6605171	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A1EG-01	THAP3	ENST00000307896.6,ENST00000487819.1,ENST00000054650.4,ENST00000484669.2	chr1	6690350:6690413:6692450:6692555:6692855:6693181,	6692451	6692555	6692526	6692526	Frame_Shift_Del	C	-	p.P145fs
LIHC	TCGA-DD-A1EG-01	PEX14	ENST00000356607.4,ENST00000491661.2	chr1	10596269:10596354:10659294:10659423:10678388:10678474,	10659295	10659423	10659396	10659396	Frame_Shift_Del	C	-	p.P92fs
LIHC	TCGA-DD-A1EG-01	VPS13D	ENST00000356315.4,ENST00000358136.3	chr1	12304593:12304674:12309279:12309396:12313778:12313883,	12309280	12309396	12309339	12309339	Frame_Shift_Del	T	-	p.P169fs
LIHC	TCGA-DD-A1EG-01	NECAP2	ENST00000406746.1,ENST00000457722.2,ENST00000504551.2,ENST00000513161.1,ENST00000492095.1,ENST00000337132.5	chr1	16775587:16775696:16778332:16778510:16785336:16785451,16775587:16775696:16778332:16778510:16782312:16782388,	16778333	16778510	16778420	16778420	Frame_Shift_Del	G	-	p.G194fs
LIHC	TCGA-DD-A1EG-01	DNAJC8	ENST00000489277.1,ENST00000263697.4	chr1	28531768:28531860:28534852:28534924:28536482:28536577,	28534853	28534924	28534907	28534907	Frame_Shift_Del	T	-	p.K139fs
LIHC	TCGA-DD-A1EG-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752411	36752411	Frame_Shift_Del	G	-	p.G194fs
LIHC	TCGA-DD-A1EG-01	PPIE	ENST00000495526.1	chr1	40209495:40209596:40211046:40214439:40214574:40214760,	40211047	40214439	40211062	40211062	Frame_Shift_Del	A	-	p.K135fs
LIHC	TCGA-DD-A1EG-01	PPIE	ENST00000497370.1,ENST00000372835.5,ENST00000482751.1,ENST00000474804.1,ENST00000356511.2,ENST00000324379.5,ENST00000372830.1	chr1	40209495:40209596:40211046:40211170:40214574:40214760,	40211047	40211170	40211062	40211062	Frame_Shift_Del	A	-	p.K135fs
LIHC	TCGA-DD-A1EG-01	IPO13	ENST00000372343.3	chr1	44426547:44426685:44426837:44426934:44429940:44429993,	44426838	44426934	44426874	44426874	Frame_Shift_Del	C	-	p.P763fs
LIHC	TCGA-DD-A1EG-01	STIL	ENST00000371877.3,ENST00000360380.3,ENST00000337817.5,ENST00000396221.2,ENST00000243182.6	chr1	47716293:47717594:47725960:47726211:47728574:47728734,	47725961	47726211	47726091	47726091	Frame_Shift_Del	T	-	p.T983fs
LIHC	TCGA-DD-A1EG-01	ANGPTL3	ENST00000371129.3	chr1	63067990:63068051:63069639:63069906:63070303:63071830,	63069640	63069906	63069752	63069752	Frame_Shift_Del	T	-	p.S348fs
LIHC	TCGA-DD-A1EG-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371026.3	chr1	67299673:67299831:67303392:67303479:67306151:67306354,67301308:67301460:67303392:67303479:67306151:67306354,	67303393	67303479	67303431	67303431	Frame_Shift_Del	T	-	p.R515fs
LIHC	TCGA-DD-A1EG-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67306151:67306354:67313166:67313361:67327829:67327985,	67313167	67313361	67313240	67313240	Frame_Shift_Del	A	-	p.F406fs
LIHC	TCGA-DD-A1EG-01	GBP5	ENST00000343435.5,ENST00000370459.3	chr1	89727902:89728084:89728365:89728468:89729418:89729631,	89728366	89728468	89728374	89728374	Frame_Shift_Del	T	-	p.K488fs
LIHC	TCGA-DD-A1EG-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478763	90478763	Frame_Shift_Del	A	-	p.E298fs
LIHC	TCGA-DD-A1EG-01	AHCYL1	ENST00000369799.5,ENST00000359172.3,ENST00000393614.4,ENST00000481423.1	chr1	110562169:110562248:110563352:110563473:110564295:110564319,	110563353	110563473	110563442	110563442	Frame_Shift_Del	A	-	p.K519fs
LIHC	TCGA-DD-A1EG-01	SLC16A4	ENST00000437429.2,ENST00000541986.1,ENST00000492412.2,ENST00000528649.1,ENST00000472422.2,ENST00000369779.4	chr1	110919571:110919783:110921474:110921978:110923603:110923765,	110921475	110921978	110921753	110921753	Frame_Shift_Del	T	-	p.N251fs
LIHC	TCGA-DD-A1EG-01	WDR3	ENST00000349139.5	chr1	118499690:118499819:118501532:118501626:118501914:118509165,	118501533	118501626	118501583	118501583	Frame_Shift_Del	A	-	p.E878fs
LIHC	TCGA-DD-A1EG-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368912.3,ENST00000368913.3	chr1	151112451:151112566:151114979:151115151:151116860:151116884,	151114980	151115151	151115007	151115007	Frame_Shift_Del	G	-	p.L31fs
LIHC	TCGA-DD-A1EG-01	SCNM1	ENST00000368902.1,ENST00000602841.1,ENST00000461862.1,ENST00000368905.4	chr1	151138946:151139017:151139409:151139498:151139596:151139694,	151139410	151139498	151139428	151139428	Frame_Shift_Del	C	-	p.C47fs
LIHC	TCGA-DD-A1EG-01	SELENBP1	ENST00000447402.3,ENST00000424475.1,ENST00000493560.1,ENST00000470345.1,ENST00000423070.1,ENST00000427977.2,ENST00000368868.5,ENST00000426705.2,ENST00000458566.1,ENST00000455397.1,ENST00000443708.1,ENST00000463664.1,ENST00000435071.1	chr1	151338147:151338160:151338243:151338322:151338750:151338929,	151338244	151338322	151338281	151338281	Frame_Shift_Del	G	-	p.P337fs
LIHC	TCGA-DD-A1EG-01	SELENBP1	ENST00000474352.1	chr1	151338147:151338160:151338243:151338929:151339197:151339380,	151338244	151338929	151338281	151338281	Frame_Shift_Del	G	-	p.P337fs
LIHC	TCGA-DD-A1EG-01	CHTOP	ENST00000368694.3,ENST00000368687.1	chr1	153614721:153614905:153615702:153615840:153617539:153617946,	153615703	153615840	153615792	153615792	Frame_Shift_Del	G	-	p.G166fs
LIHC	TCGA-DD-A1EG-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	153999981:154000073:154002371:154002530:154018544:154018676,	154002372	154002530	154002408	154002408	Frame_Shift_Del	C	-	p.G1273fs
LIHC	TCGA-DD-A1EG-01	HAX1	ENST00000447768.2,ENST00000435087.1	chr1	154245143:154245252:154245811:154246010:154246249:154246279,	154245812	154246010	154245926	154245926	Frame_Shift_Del	C	-	p.H56fs
LIHC	TCGA-DD-A1EG-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154245926	154245926	Frame_Shift_Del	C	-	p.H56fs
LIHC	TCGA-DD-A1EG-01	ADAM15	ENST00000355956.2	chr1	155033243:155033308:155033890:155033965:155034379:155034436,155033238:155033308:155033890:155033965:155034720:155034772,	155033891	155033965	155033916	155033916	Frame_Shift_Del	C	-	p.A768fs
LIHC	TCGA-DD-A1EG-01	ADAM15	ENST00000368412.3	chr1	155033243:155033308:155033893:155033965:155034379:155034436,155033238:155033308:155033893:155033965:155034051:155034122,155032680:155032819:155033893:155033965:155034720:155034772,	155033894	155033965	155033916	155033916	Frame_Shift_Del	C	-	p.A768fs
LIHC	TCGA-DD-A1EG-01	DAP3	ENST00000465375.1,ENST00000462002.1,ENST00000471523.1,ENST00000343043.3,ENST00000368336.5,ENST00000497826.1,ENST00000496863.1,ENST00000471214.1,ENST00000463575.1	chr1	155679563:155679615:155686796:155686919:155691307:155691409,	155686797	155686919	155686811	155686811	Frame_Shift_Del	T	-	p.R20fs
LIHC	TCGA-DD-A1EG-01	UCK2	ENST00000367879.4	chr1	165860462:165860559:165865426:165865569:165872418:165872516,	165865427	165865569	165865528	165865528	Frame_Shift_Del	T	-	p.L153fs
LIHC	TCGA-DD-A1EG-01	BLZF1	ENST00000367808.3,ENST00000426663.1,ENST00000329281.2	chr1	169345777:169346217:169347567:169347767:169349718:169349800,	169347568	169347767	169347582	169347582	Frame_Shift_Del	A	-	p.L161fs
LIHC	TCGA-DD-A1EG-01	RGSL1	ENST00000416676.1	chr1	182429138:182429268:182441530:182441692:182442709:182443677,182429138:182429268:182441530:182441692:182457419:182457482,	182441531	182441692	182441556	182441556	Frame_Shift_Del	C	-	p.I109fs
LIHC	TCGA-DD-A1EG-01	RGS2	ENST00000235382.5	chr1	192779499:192779561:192780110:192780277:192780531:192781403,	192780111	192780277	192780133	192780133	Frame_Shift_Del	T	-	p.A99fs
LIHC	TCGA-DD-A1EG-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072972	197072972	Frame_Shift_Del	T	-	p.K1803fs
LIHC	TCGA-DD-A1EG-01	CSRP1	ENST00000527662.1,ENST00000367306.1,ENST00000340006.2,ENST00000530120.1,ENST00000526723.1,ENST00000524951.1,ENST00000532460.1,ENST00000533432.1	chr1	201454410:201454504:201457982:201458112:201459303:201459419,	201457983	201458112	201458082	201458082	Frame_Shift_Del	G	-	p.P104fs
LIHC	TCGA-DD-A1EG-01	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782949	207782949	Frame_Shift_Del	C	-	p.P2071fs
LIHC	TCGA-DD-A1EG-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813306	214813306	Frame_Shift_Del	A	-	p.E542fs
LIHC	TCGA-DD-A1EG-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214820091	214820091	Frame_Shift_Del	A	-	p.E2393fs
LIHC	TCGA-DD-A1EG-01	ABCB10	ENST00000344517.4	chr1	229665945:229666155:229667382:229667478:229675202:229675338,	229667383	229667478	229667429	229667429	Frame_Shift_Del	C	-	p.G463fs
LIHC	TCGA-DD-A1EG-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236761177:236761279:236762782:236762924:236766459:236766676,	236762783	236762924	236762827	236762827	Frame_Shift_Del	T	-	p.I153fs
LIHC	TCGA-DD-A1EG-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370419	240370419	Frame_Shift_Del	C	-	p.C769fs
LIHC	TCGA-DD-A1EG-01	SMYD3	ENST00000541742.1,ENST00000490107.1,ENST00000388985.4,ENST00000366516.1,ENST00000366517.1	chr1	245912864:245912966:245927342:245927451:245977643:245977713,245912864:245912966:245927342:245927451:246021797:246021892,	245927343	245927451	245927443	245927443	Frame_Shift_Del	A	-	p.F303fs
LIHC	TCGA-DD-A1EG-01	ASAP2	ENST00000281419.3,ENST00000315273.4	chr2	9419445:9419518:9437428:9437574:9458652:9458727,	9437429	9437574	9437502	9437502	Frame_Shift_Del	C	-	p.D91fs
LIHC	TCGA-DD-A1EG-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11777841:11778042:11778796:11778935:11780416:11782489,	11778797	11778935	11778908	11778908	Frame_Shift_Del	T	-	p.F1887fs
LIHC	TCGA-DD-A1EG-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658018	27658018	Frame_Shift_Del	C	-	p.D195fs
LIHC	TCGA-DD-A1EG-01	SPDYA	ENST00000334056.5,ENST00000379579.4	chr2	29052015:29052185:29063037:29063335:29072715:29073300,	29063038	29063335	29063182	29063182	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-DD-A1EG-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1,ENST00000434523.2	chr2	48049356:48049442:48050281:48050499:48059487:48059590,	48050282	48050499	48050366	48050366	Frame_Shift_Del	C	-	p.G511fs
LIHC	TCGA-DD-A1EG-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8	chr2	48698449:48698506:48701821:48701958:48707062:48707155,	48701822	48701958	48701898	48701898	Frame_Shift_Del	A	-	p.K390fs
LIHC	TCGA-DD-A1EG-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650549	71650549	Frame_Shift_Del	A	-	p.E1302fs
LIHC	TCGA-DD-A1EG-01	SFXN5	ENST00000482289.1,ENST00000272433.2,ENST00000490056.1,ENST00000474528.1	chr2	73172154:73172228:73195576:73195662:73215386:73215477,73188330:73188377:73195576:73195662:73198698:73198814,	73195577	73195662	73195601	73195601	Frame_Shift_Del	G	-	p.P268fs
LIHC	TCGA-DD-A1EG-01	IL1R2	ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102636121:102636274:102638648:102638711:102640994:102641130,	102638649	102638711	102638682	102638682	Frame_Shift_Del	C	-	p.S241fs
LIHC	TCGA-DD-A1EG-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460097	107460097	Frame_Shift_Del	A	-	p.S114fs
LIHC	TCGA-DD-A1EG-01	ACTR3	ENST00000263238.2,ENST00000443297.1,ENST00000535589.2	chr2	114670748:114670804:114684921:114685032:114688877:114688946,114674460:114674585:114684921:114685032:114688877:114688946,	114684922	114685032	114685028	114685028	Frame_Shift_Del	T	-	p.L112fs
LIHC	TCGA-DD-A1EG-01	ZRANB3	ENST00000452187.2,ENST00000403017.2,ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	136033205:136033325:136071058:136071175:136072928:136073100,	136071059	136071175	136071080	136071080	Frame_Shift_Del	A	-	p.F315fs
LIHC	TCGA-DD-A1EG-01	SPOPL	ENST00000280098.4	chr2	139308543:139308624:139310123:139310251:139316591:139316769,	139310124	139310251	139310171	139310171	Frame_Shift_Del	A	-	p.K135fs
LIHC	TCGA-DD-A1EG-01	FMNL2	ENST00000288670.9	chr2	153437469:153437563:153463852:153463927:153468008:153468119,	153463853	153463927	153463863	153463863	Frame_Shift_Del	A	-	p.E296fs
LIHC	TCGA-DD-A1EG-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160255339:160255405:160257109:160257175:160261359:160261421,	160257110	160257175	160257151	160257151	Frame_Shift_Del	T	-	p.I953fs
LIHC	TCGA-DD-A1EG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102891	168102891	Frame_Shift_Del	A	-	p.I1663fs
LIHC	TCGA-DD-A1EG-01	WDR75	ENST00000436347.1,ENST00000427960.1,ENST00000314761.4	chr2	190334069:190334165:190334801:190334971:190335544:190335604,	190334802	190334971	190334844	190334844	Frame_Shift_Del	A	-	p.Q621fs
LIHC	TCGA-DD-A1EG-01	CCNYL1	ENST00000339882.5,ENST00000295414.3,ENST00000392209.3,ENST00000452312.1	chr2	208576823:208576840:208589523:208589598:208591565:208591600,	208589524	208589598	208589572	208589572	Frame_Shift_Del	T	-	p.I90fs
LIHC	TCGA-DD-A1EG-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208842118	208842118	Frame_Shift_Del	A	-	p.L268fs
LIHC	TCGA-DD-A1EG-01	ZNF142	ENST00000449707.1	chr2	219515223:219515249:219520872:219521186:219523423:219523524,	219520873	219521186	219520875	219520875	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A1EG-01	LHFPL4	ENST00000287585.6	chr3	9543480:9543995:9547650:9547887:9593957:9593991,	9547651	9547887	9547786	9547786	Frame_Shift_Del	C	-	p.D170fs
LIHC	TCGA-DD-A1EG-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10114936:10115046:10116213:10116357:10119764:10119881,	10116214	10116357	10116267	10116267	Frame_Shift_Del	T	-	p.A923fs
LIHC	TCGA-DD-A1EG-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10116213:10116357:10119764:10119881:10122783:10122912,	10119765	10119881	10119802	10119802	Frame_Shift_Del	T	-	p.L966fs
LIHC	TCGA-DD-A1EG-01	METTL6	ENST00000443029.1	chr3	15425408:15425694:15452751:15452944:15455527:15455604,	15452752	15452944	15452862	15452862	Frame_Shift_Del	T	-	p.K252fs
LIHC	TCGA-DD-A1EG-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365167	37365167	Frame_Shift_Del	A	-	p.E597fs
LIHC	TCGA-DD-A1EG-01	PHF7	ENST00000498509.2,ENST00000347025.2,ENST00000472337.1,ENST00000461861.1,ENST00000327906.3	chr3	52453935:52453950:52454326:52454451:52454918:52455011,	52454327	52454451	52454418	52454418	Frame_Shift_Del	G	-	p.R127fs
LIHC	TCGA-DD-A1EG-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543930	Frame_Shift_Del	G	-	p.G799fs
LIHC	TCGA-DD-A1EG-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54537518:54537681:54596826:54596958:54603821:54603882,	54596827	54596958	54596940	54596940	Frame_Shift_Del	T	-	p.F221fs
LIHC	TCGA-DD-A1EG-01	FAM208A	ENST00000431842.2	chr3	56667926:56667994:56672733:56672793:56674013:56674158,56667071:56667871:56672733:56672793:56674013:56674124,	56672734	56672793	56672759	56672759	Frame_Shift_Del	C	-	p.G537fs
LIHC	TCGA-DD-A1EG-01	PDHB	ENST00000383714.4,ENST00000469364.1,ENST00000480626.1,ENST00000461692.1,ENST00000302746.6,ENST00000474765.1	chr3	58415936:58415965:58416383:58416669:58417319:58417355,	58416384	58416669	58416538	58416538	Frame_Shift_Del	T	-	p.R145fs
LIHC	TCGA-DD-A1EG-01	GTPBP8	ENST00000488781.1	chr3	112709855:112710182:112711872:112711971:112715738:112715838,	112711873	112711971	112711963	112711963	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-DD-A1EG-01	NAA50	ENST00000493454.1,ENST00000493900.1,ENST00000481432.1,ENST00000497525.1,ENST00000240922.3	chr3	113440502:113440784:113441752:113441819:113442268:113442388,	113441753	113441819	113441779	113441779	Frame_Shift_Del	T	-	p.K102fs
LIHC	TCGA-DD-A1EG-01	GRAMD1C	ENST00000472384.1,ENST00000498183.1,ENST00000484714.2,ENST00000486457.1,ENST00000358160.4	chr3	113557746:113557783:113563349:113563496:113588353:113588438,	113563350	113563496	113563446	113563446	Frame_Shift_Del	A	-	p.K43fs
LIHC	TCGA-DD-A1EG-01	GTF2E1	ENST00000283875.5	chr3	120469369:120469847:120489574:120489776:120495269:120495507,	120489575	120489776	120489634	120489634	Frame_Shift_Del	A	-	p.K171fs
LIHC	TCGA-DD-A1EG-01	ATP2C1	ENST00000422190.2,ENST00000513801.1,ENST00000533801.2,ENST00000505330.1,ENST00000328560.8,ENST00000359644.3,ENST00000504948.1,ENST00000428331.2,ENST00000510168.1,ENST00000508532.1,ENST00000504381.1,ENST00000393221.4,ENST00000504612.1,ENST00000507488.2	chr3	130653465:130653555:130656271:130656307:130659473:130659535,	130656272	130656307	130656299	130656299	Frame_Shift_Del	T	-	p.F118fs
LIHC	TCGA-DD-A1EG-01	PPP2R3A	ENST00000490467.1,ENST00000334546.2,ENST00000264977.3	chr3	135789319:135789394:135797208:135797295:135801106:135801263,	135797209	135797295	135797253	135797253	Frame_Shift_Del	A	-	p.G863fs
LIHC	TCGA-DD-A1EG-01	ATR	ENST00000350721.4,ENST00000515863.1,ENST00000383101.3	chr3	142274911:142274981:142275224:142275417:142277465:142277618,	142275225	142275417	142275275	142275275	Frame_Shift_Del	A	-	p.F676fs
LIHC	TCGA-DD-A1EG-01	PLOD2	ENST00000360060.3,ENST00000460520.1,ENST00000282903.5,ENST00000494950.1	chr3	145799577:145799650:145802955:145803060:145804573:145804695,	145802956	145803060	145802975	145802975	Frame_Shift_Del	T	-	p.I405fs
LIHC	TCGA-DD-A1EG-01	HLTF	ENST00000465259.1	chr3	148773089:148773187:148777504:148777591:148778429:148778474,	148777505	148777591	148777507	148777507	Frame_Shift_Del	T	-	p.K458fs
LIHC	TCGA-DD-A1EG-01	HLTF	ENST00000392912.2,ENST00000494055.1,ENST00000310053.5,ENST00000493881.1	chr3	148773089:148773187:148777504:148777594:148778429:148778474,	148777505	148777594	148777507	148777507	Frame_Shift_Del	T	-	p.K458fs
LIHC	TCGA-DD-A1EG-01	HLTF	ENST00000465259.1	chr3	148773089:148773187:148777504:148777591:148778429:148778474,	148777505	148777591	148777522	148777522	Frame_Shift_Del	T	-	p.K454fs
LIHC	TCGA-DD-A1EG-01	HLTF	ENST00000392912.2,ENST00000494055.1,ENST00000310053.5,ENST00000493881.1	chr3	148773089:148773187:148777504:148777594:148778429:148778474,	148777505	148777594	148777522	148777522	Frame_Shift_Del	T	-	p.K454fs
LIHC	TCGA-DD-A1EG-01	ABCC5	ENST00000443497.1,ENST00000437205.1,ENST00000334444.6,ENST00000265586.6	chr3	183645117:183645231:183646534:183646613:183655688:183655848,	183646535	183646613	183646605	183646605	Frame_Shift_Del	A	-	p.L1288fs
LIHC	TCGA-DD-A1EG-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831294	2831294	Frame_Shift_Del	C	-	p.P221fs
LIHC	TCGA-DD-A1EG-01	WDR19	ENST00000512095.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3	chr4	39219602:39219725:39226503:39226653:39229829:39229977,	39226504	39226653	39226625	39226625	Frame_Shift_Del	A	-	p.E534fs
LIHC	TCGA-DD-A1EG-01	UGDH	ENST00000501493.2,ENST00000316423.6,ENST00000506179.1,ENST00000507089.1	chr4	39501530:39501873:39505494:39505605:39506036:39506128,	39505495	39505605	39505575	39505575	Frame_Shift_Del	T	-	p.M432fs
LIHC	TCGA-DD-A1EG-01	OCIAD2	ENST00000512087.1	chr4	48887421:48887582:48896022:48896070:48906500:48906615,48887421:48887582:48896022:48896070:48899820:48899852,48894874:48894906:48896022:48896070:48899820:48899852,48894849:48894906:48896022:48896070:48899170:48899220,	48896023	48896070	48896030	48896030	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-DD-A1EG-01	OCIAD2	ENST00000514576.1	chr4	48887421:48887582:48894788:48896070:48899820:48899852,	48894789	48896070	48896030	48896030	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-DD-A1EG-01	IGFBP7	ENST00000295666.4,ENST00000512512.1	chr4	57896938:57897502:57898591:57898718:57899360:57899477,	57898592	57898718	57898593	57898593	Frame_Shift_Del	T	-	p.K276fs
LIHC	TCGA-DD-A1EG-01	NAAA	ENST00000507956.1,ENST00000505594.1,ENST00000399497.3,ENST00000602782.1,ENST00000286733.4	chr4	76842103:76842276:76846887:76846964:76852366:76852457,	76846888	76846964	76846924	76846924	Frame_Shift_Del	A	-	p.F210fs
LIHC	TCGA-DD-A1EG-01	SDAD1	ENST00000395711.4,ENST00000395710.1,ENST00000356260.5	chr4	76878999:76879094:76881218:76881345:76882180:76882257,	76881219	76881345	76881269	76881269	Frame_Shift_Del	C	-	p.G478fs
LIHC	TCGA-DD-A1EG-01	HERC6	ENST00000264346.7	chr4	89345746:89345854:89349731:89349902:89352313:89352457,	89349732	89349902	89349778	89349778	Frame_Shift_Del	A	-	p.Q625fs
LIHC	TCGA-DD-A1EG-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122776643:122776716:122780146:122780333:122782658:122782834,	122780147	122780333	122780284	122780284	Frame_Shift_Del	G	-	p.H131fs
LIHC	TCGA-DD-A1EG-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151792496:151792605:151793814:151793907:151814203:151814301,	151793815	151793907	151793833	151793833	Frame_Shift_Del	A	-	p.L747fs
LIHC	TCGA-DD-A1EG-01	WWC2	ENST00000403733.3,ENST00000378925.3,ENST00000448232.2,ENST00000438543.1,ENST00000513834.1	chr4	184161335:184161415:184166568:184166698:184169866:184170013,	184166569	184166698	184166576	184166576	Frame_Shift_Del	A	-	p.K205fs
LIHC	TCGA-DD-A1EG-01	NNT	ENST00000344920.4	chr5	43603300:43603396:43609244:43609448:43613009:43613104,	43609245	43609448	43609390	43609390	Frame_Shift_Del	T	-	p.D31fs
LIHC	TCGA-DD-A1EG-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50090040:50090166:50090686:50091251:50092815:50092866,	50090687	50091251	50090703	50090703	Frame_Shift_Del	C	-	p.P295fs
LIHC	TCGA-DD-A1EG-01	NDUFS4	ENST00000296684.5,ENST00000506974.1,ENST00000502423.1,ENST00000507026.1	chr5	52942062:52942235:52954380:52954454:52978947:52978968,	52954381	52954454	52954446	52954446	Frame_Shift_Del	A	-	p.E139fs
LIHC	TCGA-DD-A1EG-01	SREK1IP1	ENST00000495198.2	chr5	64036962:64037027:64050141:64050189:64060871:64060948,64036962:64037027:64050141:64050189:64064331:64064446,	64050142	64050189	64050152	64050152	Frame_Shift_Del	T	-	p.K17fs
LIHC	TCGA-DD-A1EG-01	SLC30A5	ENST00000396591.3,ENST00000507354.1	chr5	68412350:68412429:68413065:68413223:68414325:68414455,	68413066	68413223	68413142	68413142	Frame_Shift_Del	T	-	p.L453fs
LIHC	TCGA-DD-A1EG-01	CHD1	ENST00000284049.3	chr5	98236514:98236786:98236889:98237039:98238603:98238668,	98236890	98237039	98236893	98236893	Frame_Shift_Del	T	-	p.N195fs
LIHC	TCGA-DD-A1EG-01	SLC12A2	ENST00000262461.2,ENST00000509205.1	chr5	127510235:127510358:127512796:127512844:127514258:127514381,	127512797	127512844	127512838	127512838	Frame_Shift_Del	A	-	p.K992fs
LIHC	TCGA-DD-A1EG-01	GDF9	ENST00000464378.1	chr5	132198157:132198248:132199828:132200005:132201128:132201311,	132199829	132200005	132199869	132199869	Frame_Shift_Del	G	-	p.P119fs
LIHC	TCGA-DD-A1EG-01	RNF14	ENST00000515613.1	chr5	141357867:141358395:141359687:141359916:141362944:141363117,141354368:141354520:141359687:141359916:141362944:141363117,141353147:141353307:141359687:141359916:141362944:141363117,	141359688	141359916	141359780	141359780	Frame_Shift_Del	C	-	p.C309fs
LIHC	TCGA-DD-A1EG-01	NDFIP1	ENST00000253814.4	chr5	141511372:141511460:141511776:141511907:141515294:141515382,	141511777	141511907	141511815	141511815	Frame_Shift_Del	C	-	p.P65fs
LIHC	TCGA-DD-A1EG-01	LARS	ENST00000511505.1,ENST00000545646.1,ENST00000274562.9,ENST00000505223.1	chr5	145552253:145552337:145557109:145557228:145562050:145562083,	145557110	145557228	145557197	145557197	Frame_Shift_Del	A	-	p.L13fs
LIHC	TCGA-DD-A1EG-01	ANXA6	ENST00000523714.1,ENST00000377751.5,ENST00000521512.1,ENST00000356496.5,ENST00000354546.5	chr5	150484805:150484864:150488015:150488111:150489313:150489400,	150488016	150488111	150488034	150488034	Frame_Shift_Del	C	-	p.D588fs
LIHC	TCGA-DD-A1EG-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000502673.1,ENST00000512607.2,ENST00000452673.2	chr5	179135978:179136060:179136873:179137066:179143105:179143202,	179136874	179137066	179137032	179137032	Frame_Shift_Del	T	-	p.Y229fs
LIHC	TCGA-DD-A1EG-01	CANX	ENST00000503126.1	chr5	179135978:179136060:179136919:179137066:179143105:179143202,	179136920	179137066	179137032	179137032	Frame_Shift_Del	T	-	p.Y229fs
LIHC	TCGA-DD-A1EG-01	HIVEP1	ENST00000487103.1,ENST00000478545.1,ENST00000379388.2,ENST00000491710.1	chr6	12015819:12015901:12089416:12089470:12120122:12120167,	12089417	12089470	12089463	12089463	Frame_Shift_Del	A	-	p.S29fs
LIHC	TCGA-DD-A1EG-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327823	16327823	Frame_Shift_Del	G	-	p.P241fs
LIHC	TCGA-DD-A1EG-01	KDM1B	ENST00000388870.2,ENST00000297792.5,ENST00000397244.1	chr6	18163065:18163155:18166497:18166609:18171593:18171710,	18166498	18166609	18166532	18166532	Frame_Shift_Del	A	-	p.K115fs
LIHC	TCGA-DD-A1EG-01	RGL2	ENST00000497454.1	chr6	33264808:33264892:33266231:33266428:33266646:33266701,	33266232	33266428	33266262	33266262	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A1EG-01	PHF1	ENST00000487667.1,ENST00000495509.2,ENST00000486845.1,ENST00000374516.3	chr6	33383037:33383106:33383366:33383447:33383586:33383648,	33383367	33383447	33383437	33383437	Frame_Shift_Del	C	-	p.P470fs
LIHC	TCGA-DD-A1EG-01	ABCC10	ENST00000463024.1,ENST00000244533.3,ENST00000372530.4	chr6	43406448:43406533:43409599:43409698:43410707:43410897,	43409600	43409698	43409629	43409629	Frame_Shift_Del	G	-	p.V691fs
LIHC	TCGA-DD-A1EG-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924381	82924381	Frame_Shift_Del	A	-	p.F589fs
LIHC	TCGA-DD-A1EG-01	SCML4	ENST00000369025.2	chr6	108029069:108029215:108041906:108042197:108066152:108066347,108029073:108029215:108041906:108042197:108053177:108053307,	108041907	108042197	108042104	108042104	Frame_Shift_Del	C	-	p.G201fs
LIHC	TCGA-DD-A1EG-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111636469:111636584:111643771:111643881:111650734:111650941,	111643772	111643881	111643800	111643800	Frame_Shift_Del	C	-	p.A2697fs
LIHC	TCGA-DD-A1EG-01	THBS2	ENST00000366787.3	chr6	169637264:169637441:169637719:169637890:169639693:169639790,	169637720	169637890	169637820	169637820	Frame_Shift_Del	C	-	p.G400fs
LIHC	TCGA-DD-A1EG-01	PHF14	ENST00000476009.1,ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11053447:11053533:11062494:11062606:11068307:11068387,	11062495	11062606	11062506	11062506	Frame_Shift_Del	T	-	p.I406fs
LIHC	TCGA-DD-A1EG-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24854677:24854822:24856228:24856307:24859793:24859857,	24856229	24856307	24856292	24856292	Frame_Shift_Del	T	-	p.N655fs
LIHC	TCGA-DD-A1EG-01	HOXA3	ENST00000317201.2	chr7	27146630:27148339:27149733:27150379:27162177:27162261,	27149734	27150379	27149752	27149752	Frame_Shift_Del	T	-	p.T170fs
LIHC	TCGA-DD-A1EG-01	CHN2	ENST00000424025.2,ENST00000412711.2,ENST00000421775.2,ENST00000410098.1,ENST00000539389.1,ENST00000409041.4,ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000546235.1	chr7	29546843:29546981:29548916:29549022:29552179:29552351,	29548917	29549022	29549018	29549018	Frame_Shift_Del	A	-	p.K412fs
LIHC	TCGA-DD-A1EG-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000439616.2,ENST00000543843.1,ENST00000447398.1,ENST00000449767.1	chr7	44721318:44721447:44733423:44733603:44734022:44734175,	44733424	44733603	44733525	44733525	Frame_Shift_Del	C	-	p.D479fs
LIHC	TCGA-DD-A1EG-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892415	72892415	Frame_Shift_Del	C	-	p.G459fs
LIHC	TCGA-DD-A1EG-01	BAIAP2L1	ENST00000005260.8,ENST00000473569.1,ENST00000462558.1	chr7	97946548:97946668:97949369:97949441:97949548:97949610,	97949370	97949441	97949433	97949433	Frame_Shift_Del	T	-	p.K95fs
LIHC	TCGA-DD-A1EG-01	TMEM130	ENST00000339375.4,ENST00000546258.1,ENST00000450876.1,ENST00000416379.2	chr7	98453639:98453806:98457801:98457961:98467399:98467489,98453639:98453806:98457801:98457961:98460717:98461023,	98457802	98457961	98457847	98457847	Frame_Shift_Del	A	-	p.F85fs
LIHC	TCGA-DD-A1EG-01	ZCWPW1	ENST00000472716.1	chr7	100016768:100016812:100017252:100017436:100018244:100018301,	100017253	100017436	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
LIHC	TCGA-DD-A1EG-01	ZCWPW1	ENST00000464510.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100016768:100016812:100017252:100017506:100018244:100018301,	100017253	100017506	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
LIHC	TCGA-DD-A1EG-01	TRIP6	ENST00000417475.1,ENST00000476870.1	chr7	100465015:100465228:100465532:100465610:100465729:100465855,	100465533	100465610	100465548	100465548	Frame_Shift_Del	G	-	p.G60fs
LIHC	TCGA-DD-A1EG-01	KLHDC10	ENST00000335420.5	chr7	129761893:129762042:129764290:129764375:129765704:129765771,	129764291	129764375	129764340	129764340	Frame_Shift_Del	G	-	p.G278fs
LIHC	TCGA-DD-A1EG-01	EPHB6	ENST00000411471.2,ENST00000422643.1,ENST00000425995.1,ENST00000442129.1,ENST00000392957.2	chr7	142563229:142563385:142563714:142564071:142564235:142564360,	142563715	142564071	142563797	142563797	Frame_Shift_Del	G	-	p.L395fs
LIHC	TCGA-DD-A1EG-01	TRPA1	ENST00000262209.4,ENST00000522271.1,ENST00000523582.1	chr8	72951099:72951262:72951961:72952032:72958747:72958780,	72951962	72952032	72951964	72951964	Frame_Shift_Del	T	-	p.K710fs
LIHC	TCGA-DD-A1EG-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041478	86041478	Frame_Shift_Del	A	-	p.Q477fs
LIHC	TCGA-DD-A1EG-01	EXT1	ENST00000437196.1,ENST00000378204.2	chr8	118819455:118819616:118825110:118825200:118830673:118830769,	118825111	118825200	118825183	118825183	Frame_Shift_Del	A	-	p.F550fs
LIHC	TCGA-DD-A1EG-01	PARP10	ENST00000313028.7,ENST00000525486.1,ENST00000527262.1,ENST00000525879.1,ENST00000528625.1,ENST00000531707.1,ENST00000531537.1,ENST00000529842.1,ENST00000532311.1,ENST00000528136.1,ENST00000529311.1,ENST00000530478.1,ENST00000524918.1,ENST00000528914.1	chr8	145060081:145060143:145060222:145060401:145060525:145060590,	145060223	145060401	145060249	145060249	Frame_Shift_Del	C	-	p.G52fs
LIHC	TCGA-DD-A1EG-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547423	35547423	Frame_Shift_Del	C	-	p.A302fs
LIHC	TCGA-DD-A1EG-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149933	39149933	Frame_Shift_Del	G	-	p.L507fs
LIHC	TCGA-DD-A1EG-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051651	96051651	Frame_Shift_Del	C	-	p.P1577fs
LIHC	TCGA-DD-A1EG-01	SLC35D2	ENST00000253270.7	chr9	99106185:99106278:99107580:99107683:99113384:99113453,	99107581	99107683	99107647	99107647	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-DD-A1EG-01	RAD23B	ENST00000419616.1,ENST00000358015.3	chr9	110045807:110045976:110062421:110062503:110064315:110064395,	110062422	110062503	110062491	110062491	Frame_Shift_Del	T	-	p.L46fs
LIHC	TCGA-DD-A1EG-01	ADAMTSL2	ENST00000393061.3,ENST00000354484.4,ENST00000393060.1	chr9	136401833:136401924:136402526:136402669:136403470:136403546,	136402527	136402669	136402626	136402626	Frame_Shift_Del	G	-	p.G175fs
LIHC	TCGA-DD-A1EG-01	DCLRE1C	ENST00000378249.1,ENST00000378254.1,ENST00000378255.1,ENST00000378289.4,ENST00000378246.2,ENST00000378278.2,ENST00000453695.2,ENST00000396817.2,ENST00000378258.1,ENST00000357717.2	chr10	14968841:14968896:14970014:14970151:14974852:14974954,	14970015	14970151	14970104	14970104	Frame_Shift_Del	G	-	p.S156fs
LIHC	TCGA-DD-A1EG-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000265371.4	chr10	33552573:33552801:33559602:33559784:33619635:33619810,	33559603	33559784	33559673	33559673	Frame_Shift_Del	A	-	p.F120fs
LIHC	TCGA-DD-A1EG-01	VPS26A	ENST00000395098.1,ENST00000541711.1,ENST00000546041.1,ENST00000489794.1,ENST00000467852.1,ENST00000489656.1,ENST00000373382.1,ENST00000263559.6	chr10	70917802:70917967:70922161:70922268:70925797:70925866,	70922162	70922268	70922216	70922216	Frame_Shift_Del	A	-	p.I202fs
LIHC	TCGA-DD-A1EG-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525560	75525560	Frame_Shift_Del	C	-	p.P458fs
LIHC	TCGA-DD-A1EG-01	KIF20B	ENST00000416354.1,ENST00000260753.4,ENST00000394289.2,ENST00000478929.1,ENST00000371728.3	chr10	91498714:91498853:91503564:91503684:91505655:91505716,	91503565	91503684	91503622	91503622	Frame_Shift_Del	A	-	p.K1357fs
LIHC	TCGA-DD-A1EG-01	SLK	ENST00000369755.3,ENST00000335753.4	chr10	105777917:105778047:105778541:105778666:105779491:105779680,	105778542	105778666	105778616	105778616	Frame_Shift_Del	A	-	p.K1028fs
LIHC	TCGA-DD-A1EG-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014792	119014792	Frame_Shift_Del	C	-	p.G235fs
LIHC	TCGA-DD-A1EG-01	PRDX3	ENST00000298510.2	chr10	120933962:120934104:120936532:120936665:120938266:120938345,	120936533	120936665	120936609	120936609	Frame_Shift_Del	C	-	p.R31fs
LIHC	TCGA-DD-A1EG-01	PTDSS2	ENST00000308020.5,ENST00000527479.1,ENST00000531520.1,ENST00000526878.1,ENST00000525727.1	chr11	460186:460288:473894:473977:479084:479090,	473895	473977	473947	473947	Frame_Shift_Del	A	-	p.K113fs
LIHC	TCGA-DD-A1EG-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618667	618667	Frame_Shift_Del	C	-	p.G631fs
LIHC	TCGA-DD-A1EG-01	AP2A2	ENST00000534328.1,ENST00000332231.5,ENST00000525796.1,ENST00000528815.1,ENST00000448903.2	chr11	972217:972255:977094:977224:981197:981299,	977095	977224	977157	977157	Frame_Shift_Del	C	-	p.S179fs
LIHC	TCGA-DD-A1EG-01	MRPL23	ENST00000397297.3	chr11	1974011:1974085:1993788:1993988:2005667:2005752,	1993789	1993988	1993874	1993874	Frame_Shift_Del	G	-	p.W128fs
LIHC	TCGA-DD-A1EG-01	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687267	5687267	Frame_Shift_Del	T	-	p.N271fs
LIHC	TCGA-DD-A1EG-01	FAM160A2	ENST00000265978.4	chr11	6239034:6239380:6239787:6239993:6240200:6240280,	6239788	6239993	6239867	6239867	Frame_Shift_Del	G	-	p.P466fs
LIHC	TCGA-DD-A1EG-01	FAM160A2	ENST00000524416.1,ENST00000449352.2	chr11	6239034:6239380:6239829:6239993:6240200:6240280,	6239830	6239993	6239867	6239867	Frame_Shift_Del	G	-	p.P466fs
LIHC	TCGA-DD-A1EG-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6423311:6423439:6423805:6423955:6424374:6424438,	6423806	6423955	6423808	6423808	Frame_Shift_Del	C	-	p.E418fs
LIHC	TCGA-DD-A1EG-01	SCUBE2	ENST00000309263.3,ENST00000519535.1,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9051430:9051592:9052304:9052442,9049035:9049108:9051430:9051592:9052304:9052472,	9051431	9051592	9051502	9051502	Frame_Shift_Del	T	-	p.N812fs
LIHC	TCGA-DD-A1EG-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000526707.1	chr11	9182259:9182412:9187382:9187514:9191402:9191496,	9187383	9187514	9187416	9187416	Frame_Shift_Del	A	-	p.F750fs
LIHC	TCGA-DD-A1EG-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500145	10500145	Frame_Shift_Del	C	-	p.G107fs
LIHC	TCGA-DD-A1EG-01	SLC5A12	ENST00000280467.6,ENST00000527405.1,ENST00000533617.1,ENST00000396005.3	chr11	26725077:26725218:26725339:26725494:26730858:26730926,	26725340	26725494	26725394	26725394	Frame_Shift_Del	C	-	p.G209fs
LIHC	TCGA-DD-A1EG-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308891	33308891	Frame_Shift_Del	A	-	p.K312fs
LIHC	TCGA-DD-A1EG-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000356696.3,ENST00000533034.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49178268:49178359:49179503:49179595:49186256:49186324,	49179504	49179595	49179535	49179535	Frame_Shift_Del	T	-	p.S486fs
LIHC	TCGA-DD-A1EG-01	TMEM132A	ENST00000005286.4,ENST00000453848.2	chr11	60701013:60701216:60701959:60702236:60702723:60702819,	60701960	60702236	60702216	60702216	Frame_Shift_Del	C	-	p.P607fs
LIHC	TCGA-DD-A1EG-01	PLA2G16	ENST00000415826.1	chr11	63357810:63357840:63365532:63365635:63381471:63381540,	63365533	63365635	63365592	63365592	Frame_Shift_Del	A	-	p.F20fs
LIHC	TCGA-DD-A1EG-01	PPP2R5B	ENST00000164133.2	chr11	64699030:64699081:64699220:64699340:64700236:64700364,	64699221	64699340	64699297	64699297	Frame_Shift_Del	T	-	p.L358fs
LIHC	TCGA-DD-A1EG-01	PPFIA1	ENST00000389547.3,ENST00000530294.1,ENST00000253925.7	chr11	70189856:70189998:70194294:70194526:70200406:70200558,	70194295	70194526	70194407	70194407	Frame_Shift_Del	C	-	p.P683fs
LIHC	TCGA-DD-A1EG-01	IL18BP	ENST00000534583.1	chr11	71712450:71712598:71712829:71712994:71713598:71713743,	71712830	71712994	71712851	71712851	Frame_Shift_Del	C	-	p.P178fs
LIHC	TCGA-DD-A1EG-01	RPS3	ENST00000531188.1,ENST00000422465.2,ENST00000532872.1,ENST00000530721.1,ENST00000526248.1,ENST00000525690.1	chr11	75115192:75115251:75115715:75115912:75116657:75116672,	75115716	75115912	75115814	75115814	Frame_Shift_Del	C	-	p.P213fs
LIHC	TCGA-DD-A1EG-01	DLAT	ENST00000533297.1,ENST00000280346.6	chr11	111899515:111899669:111904127:111904254:111907996:111908184,	111904128	111904254	111904183	111904183	Frame_Shift_Del	A	-	p.E239fs
LIHC	TCGA-DD-A1EG-01	KMT2A	ENST00000389506.5,ENST00000354520.4,ENST00000534358.1,ENST00000525408.1	chr11	118390671:118390779:118391516:118391600:118392002:118392132,	118391517	118391600	118391565	118391565	Frame_Shift_Del	A	-	p.L3826fs
LIHC	TCGA-DD-A1EG-01	TMEM25	ENST00000534181.1	chr11	118402492:118402586:118403124:118403176:118403631:118403664,	118403125	118403176	118403127	118403127	Frame_Shift_Del	C	-	p.D111fs
LIHC	TCGA-DD-A1EG-01	TMEM25	ENST00000525118.1	chr11	118402492:118402586:118402811:118403176:118403631:118403664,	118402812	118403176	118403127	118403127	Frame_Shift_Del	C	-	p.D111fs
LIHC	TCGA-DD-A1EG-01	TMEM25	ENST00000532762.1	chr11	118402492:118402586:118402864:118403176:118403631:118403664,118402492:118402586:118402864:118403176:118404571:118404602,	118402865	118403176	118403127	118403127	Frame_Shift_Del	C	-	p.D111fs
LIHC	TCGA-DD-A1EG-01	TMEM25	ENST00000533137.1	chr11	118402492:118402586:118402960:118403176:118403631:118403664,	118402961	118403176	118403127	118403127	Frame_Shift_Del	C	-	p.D111fs
LIHC	TCGA-DD-A1EG-01	ADAMTS8	ENST00000257359.6	chr11	130286834:130286970:130288947:130289187:130297461:130298888,	130288948	130289187	130289047	130289047	Frame_Shift_Del	C	-	p.G287fs
LIHC	TCGA-DD-A1EG-01	GLB1L3	ENST00000431683.2	chr11	134146634:134146657:134147219:134147345:134147593:134147806,	134147220	134147345	134147254	134147254	Frame_Shift_Del	T	-	p.F21fs
LIHC	TCGA-DD-A1EG-01	SLC2A3	ENST00000075120.7	chr12	8078439:8078544:8082279:8082467:8083075:8083238,	8082280	8082467	8082449	8082449	Frame_Shift_Del	C	-	p.G231fs
LIHC	TCGA-DD-A1EG-01	PIK3C2G	ENST00000546003.1	chr12	18435640:18435693:18439787:18439863:18443788:18443946,	18439788	18439863	18439843	18439843	Frame_Shift_Del	T	-	p.S247fs
LIHC	TCGA-DD-A1EG-01	PIK3C2G	ENST00000538779.1,ENST00000266497.5,ENST00000535651.1,ENST00000536967.1,ENST00000433979.1	chr12	18435640:18435693:18439780:18439863:18443788:18443946,	18439781	18439863	18439843	18439843	Frame_Shift_Del	T	-	p.S247fs
LIHC	TCGA-DD-A1EG-01	PDE3A	ENST00000359062.3,ENST00000544307.1	chr12	20799684:20799884:20801621:20801825:20803378:20803534,	20801622	20801825	20801683	20801683	Frame_Shift_Del	T	-	p.L876fs
LIHC	TCGA-DD-A1EG-01	TMEM117	ENST00000550495.1,ENST00000266534.3,ENST00000546868.1,ENST00000550623.1,ENST00000553253.1,ENST00000536799.1	chr12	44605072:44605170:44693362:44693522:44770377:44770439,	44693363	44693522	44693371	44693371	Frame_Shift_Del	T	-	p.L206fs
LIHC	TCGA-DD-A1EG-01	DPY19L2	ENST00000324472.4,ENST00000439061.2,ENST00000413230.2	chr12	63954130:63954442:63963003:63963129:63964537:63964637,	63963004	63963129	63963090	63963090	Frame_Shift_Del	T	-	p.K680fs
LIHC	TCGA-DD-A1EG-01	UHRF1BP1L	ENST00000551973.1,ENST00000279907.7,ENST00000545232.2,ENST00000356828.3	chr12	100476793:100476912:100478253:100478436:100480052:100480136,	100478254	100478436	100478385	100478385	Frame_Shift_Del	T	-	p.N386fs
LIHC	TCGA-DD-A1EG-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373671	104373671	Frame_Shift_Del	A	-	p.K78fs
LIHC	TCGA-DD-A1EG-01	MAPKAPK5	ENST00000550735.2	chr12	112326295:112326422:112326688:112326804:112327843:112327945,	112326689	112326804	112326794	112326794	Frame_Shift_Del	C	-	p.L402fs
LIHC	TCGA-DD-A1EG-01	MAPKAPK5	ENST00000551404.2,ENST00000552111.1,ENST00000547067.1,ENST00000549875.1	chr12	112326295:112326422:112326688:112326810:112327843:112327945,	112326689	112326810	112326794	112326794	Frame_Shift_Del	C	-	p.L402fs
LIHC	TCGA-DD-A1EG-01	ANKLE2	ENST00000538766.1,ENST00000539605.1,ENST00000357997.5	chr12	133304617:133304749:133306264:133306856:133310970:133311046,	133306265	133306856	133306790	133306790	Frame_Shift_Del	T	-	p.N591fs
LIHC	TCGA-DD-A1EG-01	PARP4	ENST00000381989.3	chr13	25072253:25072367:25073438:25073514:25074453:25074520,	25073439	25073514	25073469	25073469	Frame_Shift_Del	A	-	p.F149fs
LIHC	TCGA-DD-A1EG-01	CCDC122	ENST00000444614.3	chr13	44410487:44411565:44432916:44433033:44433807:44434206,	44432917	44433033	44432948	44432948	Frame_Shift_Del	T	-	p.K214fs
LIHC	TCGA-DD-A1EG-01	CCDC122	ENST00000444614.3	chr13	44410487:44411565:44432916:44433033:44433807:44434206,	44432917	44433033	44432973	44432973	Frame_Shift_Del	T	-	p.T206fs
LIHC	TCGA-DD-A1EG-01	ATP7B	ENST00000448424.2	chr13	52532446:52532680:52534283:52534458:52535972:52536051,52531651:52531743:52534283:52534458:52535972:52536049,	52534284	52534458	52534425	52534425	Frame_Shift_Del	A	-	p.F660fs
LIHC	TCGA-DD-A1EG-01	UBAC2	ENST00000468067.1,ENST00000403766.3,ENST00000473091.1	chr13	99896085:99896205:99896768:99896878:99966350:99966474,	99896769	99896878	99896772	99896772	Frame_Shift_Del	T	-	p.F95fs
LIHC	TCGA-DD-A1EG-01	EGLN3	ENST00000553215.1,ENST00000556785.1,ENST00000250457.3	chr14	34394716:34395128:34396165:34396239:34398281:34398418,	34396166	34396239	34396186	34396186	Frame_Shift_Del	T	-	p.K224fs
LIHC	TCGA-DD-A1EG-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56078773	56078773	Frame_Shift_Del	T	-	p.F3fs
LIHC	TCGA-DD-A1EG-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054755	72054755	Frame_Shift_Del	C	-	p.P57fs
LIHC	TCGA-DD-A1EG-01	ADCK1	ENST00000556048.1,ENST00000557501.1,ENST00000341211.5,ENST00000393639.4	chr14	78266481:78266513:78285310:78285456:78288777:78288861,	78285311	78285456	78285368	78285368	Frame_Shift_Del	T	-	p.L16fs
LIHC	TCGA-DD-A1EG-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92471409	92471409	Frame_Shift_Del	T	-	p.T971fs
LIHC	TCGA-DD-A1EG-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93263752:93264326:93273080:93273308:93275644:93275864,	93273081	93273308	93273171	93273171	Frame_Shift_Del	C	-	p.T212fs
LIHC	TCGA-DD-A1EG-01	MARK3	ENST00000303622.9,ENST00000560417.1,ENST00000440884.3,ENST00000553942.1,ENST00000216288.7,ENST00000558223.1,ENST00000561164.1,ENST00000558698.1,ENST00000429436.2	chr14	103918254:103918320:103923478:103923549:103928741:103928798,	103923479	103923549	103923521	103923521	Frame_Shift_Del	A	-	p.E152fs
LIHC	TCGA-DD-A1EG-01	GOLGA6L2	ENST00000567107.1,ENST00000312015.5	chr15	23689308:23689359:23689617:23689647:23690456:23690585,	23689618	23689647	23689637	23689637	Frame_Shift_Del	T	-	p.N75fs
LIHC	TCGA-DD-A1EG-01	FAN1	ENST00000565280.1,ENST00000562881.1,ENST00000568145.1,ENST00000362065.4	chr15	31220755:31220859:31221405:31221600:31222745:31222842,	31221406	31221600	31221411	31221411	Frame_Shift_Del	C	-	p.F866fs
LIHC	TCGA-DD-A1EG-01	BMF	ENST00000354670.4,ENST00000397573.1,ENST00000561360.1,ENST00000561282.1	chr15	40383991:40384089:40396380:40396541:40397995:40398287,	40396381	40396541	40396471	40396471	Frame_Shift_Del	G	-	p.P121fs
LIHC	TCGA-DD-A1EG-01	BMF	ENST00000431415.3	chr15	40383991:40384089:40396443:40396541:40397995:40398287,	40396444	40396541	40396471	40396471	Frame_Shift_Del	G	-	p.P121fs
LIHC	TCGA-DD-A1EG-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961551	41961551	Frame_Shift_Del	G	-	p.L153fs
LIHC	TCGA-DD-A1EG-01	ZNF106	ENST00000263805.4,ENST00000565611.1,ENST00000565500.1,ENST00000565380.1	chr15	42717031:42717223:42720215:42720332:42727581:42727716,	42720216	42720332	42720244	42720244	Frame_Shift_Del	T	-	p.N1634fs
LIHC	TCGA-DD-A1EG-01	CATSPER2	ENST00000354127.4,ENST00000396879.1,ENST00000381761.1	chr15	43924396:43924561:43924914:43925126:43927557:43927614,	43924915	43925126	43925001	43925001	Frame_Shift_Del	T	-	p.K435fs
LIHC	TCGA-DD-A1EG-01	CATSPER2	ENST00000321596.5	chr15	43924396:43924561:43924914:43925132:43927557:43927614,	43924915	43925132	43925001	43925001	Frame_Shift_Del	T	-	p.K435fs
LIHC	TCGA-DD-A1EG-01	WDR76	ENST00000381246.2,ENST00000263795.6,ENST00000452115.1	chr15	44120272:44120564:44127258:44127348:44128358:44128414,	44127259	44127348	44127322	44127322	Frame_Shift_Del	T	-	p.F177fs
LIHC	TCGA-DD-A1EG-01	CTDSPL2	ENST00000558966.1,ENST00000260327.4	chr15	44778751:44778898:44782981:44783197:44788577:44788656,	44782982	44783197	44783034	44783034	Frame_Shift_Del	A	-	p.V176fs
LIHC	TCGA-DD-A1EG-01	SCG3	ENST00000542355.2,ENST00000220478.3	chr15	51988071:51988188:51991515:51991599:51993303:51993441,	51991516	51991599	51991561	51991561	Frame_Shift_Del	A	-	p.E344fs
LIHC	TCGA-DD-A1EG-01	TCF12	ENST00000438423.2,ENST00000557947.1,ENST00000559609.1,ENST00000267811.5,ENST00000557843.1,ENST00000452095.2,ENST00000333725.5	chr15	57383986:57384089:57458599:57458664:57484355:57484437,	57458600	57458664	57458623	57458623	Frame_Shift_Del	T	-	p.F117fs
LIHC	TCGA-DD-A1EG-01	DET1	ENST00000557842.1	chr15	89070829:89071017:89073853:89074704:89074843:89074946,	89073854	89074704	89074424	89074424	Frame_Shift_Del	A	-	p.F182fs
LIHC	TCGA-DD-A1EG-01	CCDC78	ENST00000463539.1,ENST00000466708.1,ENST00000293889.6,ENST00000482152.1,ENST00000485091.1,ENST00000345165.4	chr16	773094:773161:773856:773936:774105:774205,	773857	773936	773899	773899	Frame_Shift_Del	T	-	p.K364fs
LIHC	TCGA-DD-A1EG-01	ZNF200	ENST00000575948.1,ENST00000414144.2	chr16	3282832:3282921:3283505:3283836:3285111:3285360,3282832:3282921:3283505:3283836:3284986:3285070,	3283506	3283836	3283724	3283724	Frame_Shift_Del	G	-	p.P11fs
LIHC	TCGA-DD-A1EG-01	CLUAP1	ENST00000574592.1,ENST00000575134.1,ENST00000572600.1,ENST00000574369.1,ENST00000574551.1,ENST00000576634.1,ENST00000341633.5,ENST00000417763.2,ENST00000571025.1	chr16	3565507:3565591:3569902:3570036:3573157:3573196,	3569903	3570036	3569976	3569976	Frame_Shift_Del	A	-	p.E218fs
LIHC	TCGA-DD-A1EG-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000565284.1,ENST00000564337.1	chr16	28146536:28146645:28157414:28157524:28163979:28164106,	28157415	28157524	28157475	28157475	Frame_Shift_Del	A	-	p.L425fs
LIHC	TCGA-DD-A1EG-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000545570.1,ENST00000395532.4,ENST00000359285.5,ENST00000322610.8	chr16	28880597:28880704:28883100:28883304:28883510:28883722,	28883101	28883304	28883208	28883208	Frame_Shift_Del	C	-	p.P474fs
LIHC	TCGA-DD-A1EG-01	VPS35	ENST00000568784.2,ENST00000299138.7	chr16	46693588:46694563:46695629:46695773:46696154:46696394,	46695630	46695773	46695735	46695735	Frame_Shift_Del	T	-	p.K702fs
LIHC	TCGA-DD-A1EG-01	ORC6	ENST00000219097.2,ENST00000563599.1,ENST00000566860.1	chr16	46727004:46727094:46729473:46729586:46729928:46729997,	46729474	46729586	46729525	46729525	Frame_Shift_Del	A	-	p.V118fs
LIHC	TCGA-DD-A1EG-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000569991.1,ENST00000394747.1,ENST00000567385.1,ENST00000394748.1	chr16	48258258:48258340:48261716:48261875:48264347:48264484,	48261717	48261875	48261759	48261759	Frame_Shift_Del	G	-	p.P119fs
LIHC	TCGA-DD-A1EG-01	CDH11	ENST00000567934.1,ENST00000268603.4,ENST00000394156.3	chr16	65032464:65032759:65038544:65038944:65087706:65087831,	65038545	65038944	65038686	65038686	Frame_Shift_Del	C	-	p.G29fs
LIHC	TCGA-DD-A1EG-01	SF3B3	ENST00000302516.5	chr16	70590081:70590237:70590788:70590932:70594371:70594494,	70590789	70590932	70590924	70590924	Frame_Shift_Del	G	-	p.G668fs
LIHC	TCGA-DD-A1EG-01	SMG6	ENST00000575454.1,ENST00000263073.6,ENST00000536871.2,ENST00000544865.1,ENST00000354901.4	chr17	1985209:1985250:1989018:1989195:2075951:2076153,	1989019	1989195	1989141	1989141	Frame_Shift_Del	G	-	p.L1107fs
LIHC	TCGA-DD-A1EG-01	MYO18A	ENST00000530254.2,ENST00000527372.1,ENST00000531253.1,ENST00000533112.1	chr17	27443461:27443473:27445062:27445207:27445394:27445458,	27445063	27445207	27445133	27445133	Frame_Shift_Del	G	-	p.P656fs
LIHC	TCGA-DD-A1EG-01	BLMH	ENST00000584603.2,ENST00000580709.1,ENST00000261714.6	chr17	28614841:28614965:28616390:28616500:28618328:28618526,	28616391	28616500	28616399	28616399	Frame_Shift_Del	A	-	p.W105fs
LIHC	TCGA-DD-A1EG-01	CRLF3	ENST00000578692.1,ENST00000544695.1,ENST00000324238.6	chr17	29120467:29120690:29123177:29123355:29124328:29124416,	29123178	29123355	29123265	29123265	Frame_Shift_Del	A	-	p.F172fs
LIHC	TCGA-DD-A1EG-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683564	29683564	Frame_Shift_Del	A	-	p.K2568fs
LIHC	TCGA-DD-A1EG-01	RPL23	ENST00000577407.1,ENST00000479035.2,ENST00000245857.5,ENST00000394332.1,ENST00000378096.3,ENST00000470646.1	chr17	37006691:37006728:37008856:37008985:37009274:37009358,	37008857	37008985	37008859	37008859	Frame_Shift_Del	T	-	p.K75fs
LIHC	TCGA-DD-A1EG-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40946631:40946686:40946789:40947400:40947478:40947539,	40946790	40947400	40947335	40947335	Frame_Shift_Del	C	-	p.P968fs
LIHC	TCGA-DD-A1EG-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394195	47394195	Frame_Shift_Del	T	-	p.N298fs
LIHC	TCGA-DD-A1EG-01	MBTD1	ENST00000415868.1,ENST00000586178.1	chr17	49254787:49258055:49269563:49269641:49270142:49270377,	49269564	49269641	49269599	49269599	Frame_Shift_Del	T	-	p.K578fs
LIHC	TCGA-DD-A1EG-01	MBTD1	ENST00000415868.1,ENST00000376381.2,ENST00000591270.1,ENST00000586178.1	chr17	49281151:49281286:49284248:49284366:49286674:49286791,49281151:49281286:49284248:49284366:49294694:49294777,	49284249	49284366	49284310	49284310	Frame_Shift_Del	G	-	p.P181fs
LIHC	TCGA-DD-A1EG-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000582678.1	chr17	61559826:61560050:61560389:61560534:61560820:61560919,	61560390	61560534	61560474	61560474	Frame_Shift_Del	G	-	p.W476fs
LIHC	TCGA-DD-A1EG-01	HELZ	ENST00000579953.1,ENST00000580168.1,ENST00000358691.5	chr17	65124766:65124971:65132085:65132314:65134046:65134230,	65132086	65132314	65132185	65132185	Frame_Shift_Del	A	-	p.L1028fs
LIHC	TCGA-DD-A1EG-01	CD300A	ENST00000582319.1	chr17	72462814:72462882:72469674:72470013:72470670:72470824,	72469675	72470013	72469709	72469709	Frame_Shift_Del	G	-	p.A25fs
LIHC	TCGA-DD-A1EG-01	UNK	ENST00000293218.3,ENST00000589666.1	chr17	73815819:73815866:73816000:73816189:73818557:73818739,	73816001	73816189	73816156	73816156	Frame_Shift_Del	T	-	p.F678fs
LIHC	TCGA-DD-A1EG-01	DSG4	ENST00000359747.4,ENST00000308128.4	chr18	28979234:28979506:28980843:28980983:28983378:28983597,	28980844	28980983	28980926	28980926	Frame_Shift_Del	A	-	p.K455fs
LIHC	TCGA-DD-A1EG-01	RNF138	ENST00000577999.1	chr18	29704696:29704808:29706689:29706763:29709081:29709265,	29706690	29706763	29706727	29706727	Frame_Shift_Del	A	-	p.L211fs
LIHC	TCGA-DD-A1EG-01	RNF138	ENST00000257190.5,ENST00000261593.3	chr18	29704696:29704808:29706655:29706763:29709081:29709265,	29706656	29706763	29706727	29706727	Frame_Shift_Del	A	-	p.L211fs
LIHC	TCGA-DD-A1EG-01	MRO	ENST00000587291.1,ENST00000256425.2,ENST00000398439.3,ENST00000436348.2,ENST00000428869.2,ENST00000585524.1	chr18	48326416:48326513:48327718:48327874:48331523:48331706,	48327719	48327874	48327797	48327797	Frame_Shift_Del	T	-	p.K169fs
LIHC	TCGA-DD-A1EG-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56587206	56587206	Frame_Shift_Del	C	-	p.P564fs
LIHC	TCGA-DD-A1EG-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918916	1918916	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-DD-A1EG-01	SLC1A6	ENST00000221742.3,ENST00000430939.2	chr19	15064946:15065141:15067287:15067521:15072813:15073157,	15067288	15067521	15067447	15067447	Frame_Shift_Del	C	-	p.G273fs
LIHC	TCGA-DD-A1EG-01	SUGP2	ENST00000601879.1,ENST00000600239.1,ENST00000337018.6,ENST00000452918.2,ENST00000456085.2,ENST00000598240.1,ENST00000594773.1,ENST00000600377.1,ENST00000330854.11	chr19	19119125:19119237:19120663:19121151:19129917:19130038,	19120664	19121151	19120959	19120959	Frame_Shift_Del	C	-	p.G681fs
LIHC	TCGA-DD-A1EG-01	GPI	ENST00000415930.3	chr19	34859553:34859607:34868639:34868786:34869838:34869910,	34868640	34868786	34868733	34868733	Frame_Shift_Del	A	-	p.K205fs
LIHC	TCGA-DD-A1EG-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599117.1,ENST00000598725.1	chr19	39965154:39965358:39966720:39966816:39966895:39967306,	39966721	39966816	39966797	39966797	Frame_Shift_Del	C	-	p.T1034fs
LIHC	TCGA-DD-A1EG-01	PPFIA3	ENST00000602351.1,ENST00000334186.4	chr19	49639980:49640168:49641461:49641684:49642924:49643088,	49641462	49641684	49641574	49641574	Frame_Shift_Del	C	-	p.P657fs
LIHC	TCGA-DD-A1EG-01	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165375	50165375	Frame_Shift_Del	C	-	p.G271fs
LIHC	TCGA-DD-A1EG-01	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165375	50165375	Frame_Shift_Del	C	-	p.G271fs
LIHC	TCGA-DD-A1EG-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000599857.1,ENST00000595904.1	chr19	50905034:50905181:50905255:50905381:50905461:50905630,	50905256	50905381	50905331	50905331	Frame_Shift_Del	G	-	p.R180fs
LIHC	TCGA-DD-A1EG-01	DZANK1	ENST00000487128.1,ENST00000358866.6,ENST00000377630.5,ENST00000262547.5,ENST00000329494.5,ENST00000609267.1,ENST00000470526.1,ENST00000357236.4,ENST00000608192.1,ENST00000460891.1	chr20	18414295:18414409:18423990:18424108:18429627:18429632,	18423991	18424108	18424086	18424086	Frame_Shift_Del	G	-	p.R104fs
LIHC	TCGA-DD-A1EG-01	DUSP15	ENST00000398084.2,ENST00000339738.5,ENST00000375966.4,ENST00000486996.1,ENST00000398083.1,ENST00000278979.3,ENST00000459848.1,ENST00000428829.1	chr20	30451709:30451784:30452755:30452805:30454873:30454956,	30452756	30452805	30452781	30452781	Frame_Shift_Del	C	-	p.V52fs
LIHC	TCGA-DD-A1EG-01	EPB41L1	ENST00000373950.2,ENST00000202028.5,ENST00000441639.1	chr20	34782136:34782282:34785780:34785963:34800193:34800298,34782136:34782282:34785780:34785963:34797409:34797820,	34785781	34785963	34785917	34785917	Frame_Shift_Del	C	-	p.S541fs
LIHC	TCGA-DD-A1EG-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676874	36676874	Frame_Shift_Del	C	-	p.P137fs
LIHC	TCGA-DD-A1EG-01	WFDC3	ENST00000493693.1	chr20	44405713:44405848:44416474:44416621:44417569:44417698,44404149:44404241:44416474:44416621:44420470:44420507,44404149:44404241:44416474:44416621:44417569:44417698,	44416475	44416621	44416533	44416533	Frame_Shift_Del	T	-	p.K100fs
LIHC	TCGA-DD-A1EG-01	RAB22A	ENST00000244040.3	chr20	56886105:56886178:56918773:56918855:56928328:56928400,	56918774	56918855	56918806	56918806	Frame_Shift_Del	A	-	p.Q50fs
LIHC	TCGA-DD-A1EG-01	LAMA5	ENST00000252999.3	chr20	60899496:60899610:60900371:60900602:60901732:60901816,	60900372	60900602	60900383	60900383	Frame_Shift_Del	C	-	p.D1840fs
LIHC	TCGA-DD-A1EG-01	PCMTD2	ENST00000299468.7,ENST00000308824.6	chr20	62887196:62887223:62891294:62891625:62895781:62895879,	62891295	62891625	62891612	62891612	Frame_Shift_Del	G	-	p.V98fs
LIHC	TCGA-DD-A1EG-01	GABPA	ENST00000400075.3,ENST00000487266.1,ENST00000354828.3	chr21	27117520:27117665:27121346:27121431:27124299:27124545,	27121347	27121431	27121382	27121382	Frame_Shift_Del	A	-	p.V86fs
LIHC	TCGA-DD-A1EG-01	MICAL3	ENST00000429452.1,ENST00000444520.1,ENST00000400561.2,ENST00000383094.3,ENST00000585038.1,ENST00000414725.2,ENST00000441493.2,ENST00000207726.7	chr22	18379489:18379747:18382213:18382314:18383607:18383763,	18382214	18382314	18382248	18382248	Frame_Shift_Del	T	-	p.K305fs
LIHC	TCGA-DD-A1EG-01	SLC2A11	ENST00000316185.8,ENST00000405340.2,ENST00000398356.2,ENST00000345044.6,ENST00000255830.3	chr22	24224945:24225056:24225958:24226060:24226135:24226211,	24225959	24226060	24226026	24226026	Frame_Shift_Del	G	-	p.W351fs
LIHC	TCGA-DD-A1EG-01	EIF4ENIF1	ENST00000397525.1,ENST00000397523.1,ENST00000330125.5	chr22	31858917:31859119:31859666:31859953:31864160:31864288,	31859667	31859953	31859707	31859707	Frame_Shift_Del	T	-	p.D182fs
LIHC	TCGA-DD-A1EG-01	PISD	ENST00000266095.5,ENST00000422020.1,ENST00000442379.1,ENST00000382151.2,ENST00000397500.1	chr22	32017847:32017871:32019669:32019835:32026789:32026810,32017847:32017871:32019669:32019835:32021566:32021772,32017847:32017871:32019669:32019835:32021748:32022002,	32019670	32019835	32019822	32019822	Frame_Shift_Del	G	-	p.Q23fs
LIHC	TCGA-DD-A1EG-01	PLA2G6	ENST00000335539.3,ENST00000402064.1,ENST00000332509.3	chr22	38539243:38539295:38541444:38541660:38565224:38565474,	38541445	38541660	38541574	38541574	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-DD-A1EG-01	TUBGCP6	ENST00000498611.1	chr22	50658385:50658444:50659703:50660303:50660456:50660531,	50659704	50660303	50660129	50660129	Frame_Shift_Del	C	-	p.A887fs
LIHC	TCGA-DD-A1EG-01	TUBGCP6	ENST00000439308.2	chr22	50658385:50658444:50658620:50660303:50660456:50660531,	50658621	50660303	50660129	50660129	Frame_Shift_Del	C	-	p.A887fs
LIHC	TCGA-DD-A1EG-01	TUBGCP6	ENST00000248846.5	chr22	50658385:50658444:50658679:50660303:50660456:50660531,	50658680	50660303	50660129	50660129	Frame_Shift_Del	C	-	p.A887fs
LIHC	TCGA-DD-A1EG-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745879	17745879	Frame_Shift_Del	A	-	p.E1197fs
LIHC	TCGA-DD-A1EG-01	SRPX	ENST00000343800.6,ENST00000538295.1,ENST00000544439.1,ENST00000378533.3	chrX	38024021:38024148:38031133:38031310:38033412:38033604,	38031134	38031310	38031194	38031194	Frame_Shift_Del	C	-	p.E156fs
LIHC	TCGA-DD-A1EG-01	MED14	ENST00000324817.1	chrX	40560416:40560495:40562695:40562821:40568599:40568711,	40562696	40562821	40562784	40562784	Frame_Shift_Del	G	-	p.P441fs
LIHC	TCGA-DD-A1EH-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000261023.3	chr2	187540546:187540654:187541539:187541662:187541923:187542168,	187541540	187541662	187541638	187541639	Frame_Shift_Ins	-	G	p.AF1009fs
LIHC	TCGA-DD-A1EH-01	IQCA1	ENST00000309507.5,ENST00000418802.1,ENST00000254653.5	chr2	237289255:237289276:237300618:237300714:237300886:237300993,237289211:237289279:237300618:237300714:237300886:237300993,	237300619	237300714	237300683	237300683	Frame_Shift_Del	T	-	p.N450fs
LIHC	TCGA-DD-A1EH-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125147	12125148	Frame_Shift_Ins	-	A	p.K1707fs
LIHC	TCGA-DD-A1EH-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549399	32549399	Frame_Shift_Del	C	-	p.S196fs
LIHC	TCGA-DD-A1EH-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549402	32549403	Frame_Shift_Ins	-	T	p.K195fs
LIHC	TCGA-DD-A1EH-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549584	32549585	Frame_Shift_Ins	-	T	p.N134fs
LIHC	TCGA-DD-A1EH-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
LIHC	TCGA-DD-A1EH-01	C11orf74	ENST00000528092.1	chr11	36631630:36631789:36669565:36669705:36680568:36680612,36657600:36657667:36669565:36669705:36680568:36680612,36654833:36654988:36669565:36669705:36680568:36680612,	36669566	36669705	36669639	36669642	Frame_Shift_Del	CCAG	-	p.AQ144fs
LIHC	TCGA-DD-A1EH-01	C11orf74	ENST00000528092.1	chr11	36631630:36631789:36669565:36669705:36680568:36680612,36657600:36657667:36669565:36669705:36680568:36680612,36654833:36654988:36669565:36669705:36680568:36680612,	36669566	36669705	36669648	36669649	Frame_Shift_Ins	-	C	p.L148fs
LIHC	TCGA-DD-A1EH-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347071	347072	Frame_Shift_Ins	-	G	p.Q647fs
LIHC	TCGA-DD-A1EI-01	SHROOM3	ENST00000296043.6	chr4	77675463:77676345:77677601:77678090:77680697:77680848,	77677602	77678090	77677614	77677618	Frame_Shift_Del	TTCTA	-	p.LSK1574fs
LIHC	TCGA-DD-A1EI-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310486	33310486	Frame_Shift_Del	A	-	p.T154fs
LIHC	TCGA-DD-A1EI-01	LIG3	ENST00000592690.1	chr17	33307595:33307641:33310250:33310571:33313006:33313150,	33310251	33310571	33310486	33310486	Frame_Shift_Del	A	-	p.T154fs
LIHC	TCGA-DD-A1EJ-01	DDX50	ENST00000373585.3,ENST00000460470.1	chr10	70673182:70673332:70673814:70673960:70679587:70679737,	70673815	70673960	70673882	70673882	Frame_Shift_Del	A	-	p.A337fs
LIHC	TCGA-DD-A1EJ-01	SWAP70	ENST00000524817.1,ENST00000318950.6	chr11	9715692:9715833:9735012:9735186:9746204:9746432,	9735013	9735186	9735070	9735070	Frame_Shift_Del	A	-	p.K101fs
LIHC	TCGA-DD-A1EJ-01	VEZT	ENST00000550803.1,ENST00000547484.1	chr12	95645742:95645847:95650925:95651015:95656681:95656835,95645742:95645847:95650925:95651015:95652020:95652058,95650325:95650398:95650925:95651015:95656681:95656835,95650325:95650398:95650925:95651015:95652020:95652058,	95650926	95651015	95650968	95650969	Frame_Shift_Ins	-	T	p.F71fs
LIHC	TCGA-DD-A1EJ-01	VEZT	ENST00000549624.1	chr12	95645742:95645847:95650929:95651015:95656681:95656835,95650325:95650398:95650929:95651015:95656681:95656835,	95650930	95651015	95650968	95650969	Frame_Shift_Ins	-	T	p.F71fs
LIHC	TCGA-DD-A1EJ-01	RMDN3	ENST00000560588.1,ENST00000260385.6,ENST00000558232.1,ENST00000338376.3,ENST00000558777.1	chr15	41029485:41029539:41029825:41029924:41030162:41030240,	41029826	41029924	41029894	41029894	Frame_Shift_Del	T	-	p.T386fs
LIHC	TCGA-DD-A1EJ-01	SLC22A31	ENST00000562855.2,ENST00000562916.1,ENST00000563595.2	chr16	89263705:89263817:89264529:89264744:89264849:89264958,	89264530	89264744	89264580	89264580	Frame_Shift_Del	C	-	p.G401fs
LIHC	TCGA-DD-A1EK-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000565605.1,ENST00000569240.1	chr16	58622724:58622810:58633139:58633415:58663631:58663719,	58633140	58633415	58633164	58633165	Frame_Shift_Ins	-	C	p.R26fs
LIHC	TCGA-DD-A39W-01	STEAP3	ENST00000393110.2,ENST00000425223.2,ENST00000393107.2,ENST00000393106.2,ENST00000354888.5,ENST00000393108.2	chr2	120005254:120005782:120012259:120012424:120020632:120020915,	120012260	120012424	120012401	120012401	Frame_Shift_Del	T	-	p.W388fs
LIHC	TCGA-DD-A39X-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283258	74283259	Frame_Shift_Del	CG	-	p.R434fs
LIHC	TCGA-DD-A39X-01	ZNFX1	ENST00000371754.4	chr20	47855479:47855837:47858346:47858460:47868063:47868159,	47858347	47858460	47858380	47858380	Frame_Shift_Del	A	-	p.F1131fs
LIHC	TCGA-DD-A39Y-01	AGRN	ENST00000379370.2	chr1	978618:978837:978917:979112:979202:979403,	978918	979112	979007	979007	Frame_Shift_Del	C	-	p.P565fs
LIHC	TCGA-DD-A39Y-01	C1orf159	ENST00000434641.1	chr1	1018295:1018367:1019294:1019391:1019732:1019763,	1019295	1019391	1019308	1019308	Frame_Shift_Del	G	-	p.P345fs
LIHC	TCGA-DD-A39Y-01	C1orf159	ENST00000467751.1,ENST00000379325.3	chr1	1018295:1018367:1019294:1019466:1019732:1019763,	1019295	1019466	1019308	1019308	Frame_Shift_Del	G	-	p.P345fs
LIHC	TCGA-DD-A39Y-01	SDF4	ENST00000545427.1,ENST00000465727.1,ENST00000263741.7	chr1	1159211:1159348:1163847:1164326:1167271:1167348,	1163848	1164326	1163998	1163998	Frame_Shift_Del	G	-	p.P59fs
LIHC	TCGA-DD-A39Y-01	UBE2J2	ENST00000473215.1,ENST00000400929.2,ENST00000435198.1,ENST00000509720.1,ENST00000360466.2,ENST00000450390.2,ENST00000349431.6,ENST00000339385.6,ENST00000348298.7,ENST00000464036.1,ENST00000400930.4,ENST00000347370.2	chr1	1190818:1190867:1191424:1191505:1192371:1192510,	1191425	1191505	1191502	1191502	Frame_Shift_Del	T	-	p.R88fs
LIHC	TCGA-DD-A39Y-01	UBE2J2	ENST00000473215.1,ENST00000400929.2,ENST00000466752.1,ENST00000435198.1,ENST00000360466.2,ENST00000450390.2,ENST00000349431.6,ENST00000339385.6,ENST00000348298.7,ENST00000400930.4,ENST00000471154.1,ENST00000347370.2	chr1	1192501:1192510:1192587:1192690:1198725:1198766,	1192588	1192690	1192662	1192662	Frame_Shift_Del	A	-	p.F15fs
LIHC	TCGA-DD-A39Y-01	UBE2J2	ENST00000473215.1,ENST00000400929.2,ENST00000466752.1,ENST00000435198.1,ENST00000360466.2,ENST00000450390.2,ENST00000349431.6,ENST00000339385.6,ENST00000348298.7,ENST00000400930.4,ENST00000471154.1,ENST00000347370.2	chr1	1192501:1192510:1192587:1192690:1198725:1198766,	1192588	1192690	1192671	1192671	Frame_Shift_Del	T	-	p.K12fs
LIHC	TCGA-DD-A39Y-01	UBE2J2	ENST00000400929.2	chr1	1192649:1192690:1198725:1198766:1203241:1203372,1192656:1192690:1198725:1198766:1209045:1209195,	1198726	1198766	1198734	1198734	Frame_Shift_Del	G	-	p.P3fs
LIHC	TCGA-DD-A39Y-01	UBE2J2	ENST00000349431.6,ENST00000461142.1,ENST00000477894.1,ENST00000348298.7,ENST00000464036.1	chr1	1198725:1198766:1203241:1203372:1206889:1207017,1198725:1198766:1203241:1203372:1208878:1209106,1198725:1198766:1203241:1203372:1209045:1209195,	1203242	1203372	1203361	1203361	Frame_Shift_Del	G	-	p.T4fs
LIHC	TCGA-DD-A39Y-01	UBE2J2	ENST00000473215.1,ENST00000503294.1,ENST00000347370.2	chr1	1198725:1198766:1203112:1203372:1209045:1209195,	1203113	1203372	1203361	1203361	Frame_Shift_Del	G	-	p.T4fs
LIHC	TCGA-DD-A39Y-01	SCNN1D	ENST00000400928.3,ENST00000379101.4,ENST00000338555.2	chr1	1217655:1217695:1219357:1219470:1221305:1221548,	1219358	1219470	1219428	1219428	Frame_Shift_Del	C	-	p.D8fs
LIHC	TCGA-DD-A39Y-01	VWA1	ENST00000476993.1	chr1	1371114:1371201:1372306:1372864:1374460:1375598,	1372307	1372864	1372689	1372689	Frame_Shift_Del	C	-	p.G152fs
LIHC	TCGA-DD-A39Y-01	ATAD3C	ENST00000378785.2	chr1	1391604:1391729:1392508:1392560:1394540:1394611,	1392509	1392560	1392529	1392529	Frame_Shift_Del	A	-	p.E237fs
LIHC	TCGA-DD-A39Y-01	ATAD3A	ENST00000378756.3,ENST00000536055.1,ENST00000339113.4	chr1	1451391:1451468:1452690:1452792:1453095:1453155,	1452691	1452792	1452776	1452776	Frame_Shift_Del	C	-	p.T171fs
LIHC	TCGA-DD-A39Y-01	CALML6	ENST00000307786.3	chr1	1846847:1847174:1847879:1848054:1848190:1848335,	1847880	1848054	1848005	1848005	Frame_Shift_Del	C	-	p.N68fs
LIHC	TCGA-DD-A39Y-01	PRKCZ	ENST00000400921.2,ENST00000461106.2,ENST00000478770.2,ENST00000486681.1,ENST00000503672.1,ENST00000378567.3,ENST00000479263.1,ENST00000400920.1	chr1	2080310:2080363:2082228:2082417:2087433:2087526,	2082229	2082417	2082322	2082322	Frame_Shift_Del	G	-	p.G78fs
LIHC	TCGA-DD-A39Y-01	PANK4	ENST00000505228.1,ENST00000435556.3,ENST00000502512.1,ENST00000378466.3	chr1	2443066:2443122:2444326:2444478:2445440:2445524,	2444327	2444478	2444343	2444343	Frame_Shift_Del	C	-	p.A571fs
LIHC	TCGA-DD-A39Y-01	PANK4	ENST00000505228.1,ENST00000435556.3,ENST00000378466.3	chr1	2445871:2445905:2447000:2447156:2449602:2449703,	2447001	2447156	2447037	2447037	Frame_Shift_Del	T	-	p.K446fs
LIHC	TCGA-DD-A39Y-01	MMEL1	ENST00000288709.6,ENST00000504800.1,ENST00000378412.3,ENST00000502556.1	chr1	2542719:2542779:2543565:2543643:2560769:2560933,	2543566	2543643	2543569	2543569	Frame_Shift_Del	G	-	p.R68fs
LIHC	TCGA-DD-A39Y-01	MMEL1	ENST00000288709.6,ENST00000504800.1,ENST00000378412.3,ENST00000502556.1	chr1	2542719:2542779:2543565:2543643:2560769:2560933,	2543566	2543643	2543585	2543585	Frame_Shift_Del	A	-	p.F62fs
LIHC	TCGA-DD-A39Y-01	MEGF6	ENST00000491842.1	chr1	3407488:3407523:3409202:3409331:3410334:3410361,3407488:3407523:3409202:3409331:3410559:3410688,	3409203	3409331	3409277	3409277	Frame_Shift_Del	C	-	p.G1482fs
LIHC	TCGA-DD-A39Y-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410404	3410404	Frame_Shift_Del	C	-	p.A1440fs
LIHC	TCGA-DD-A39Y-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000294599.4	chr1	3418359:3418485:3421771:3421906:3421985:3422120,	3421772	3421906	3421878	3421878	Frame_Shift_Del	C	-	p.G694fs
LIHC	TCGA-DD-A39Y-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000294599.4	chr1	3427346:3427466:3428113:3428251:3428569:3428692,	3428114	3428251	3428168	3428168	Frame_Shift_Del	G	-	p.L354fs
LIHC	TCGA-DD-A39Y-01	WRAP73	ENST00000270708.7,ENST00000465916.1,ENST00000378322.3,ENST00000497940.1	chr1	3551577:3551638:3551723:3551858:3552507:3552594,	3551724	3551858	3551763	3551763	Frame_Shift_Del	G	-	p.P233fs
LIHC	TCGA-DD-A39Y-01	CEP104	ENST00000378230.3	chr1	3745829:3745937:3746354:3746561:3747609:3747786,	3746355	3746561	3746497	3746497	Frame_Shift_Del	A	-	p.L634fs
LIHC	TCGA-DD-A39Y-01	NPHP4	ENST00000378169.3,ENST00000489180.2,ENST00000378156.4,ENST00000478423.2	chr1	6021853:6022009:6027358:6027423:6029146:6029319,	6027359	6027423	6027399	6027399	Frame_Shift_Del	G	-	p.P159fs
LIHC	TCGA-DD-A39Y-01	NPHP4	ENST00000378169.3,ENST00000489180.2,ENST00000378156.4	chr1	6027358:6027423:6029146:6029319:6038329:6038473,	6029147	6029319	6029252	6029252	Frame_Shift_Del	C	-	p.G116fs
LIHC	TCGA-DD-A39Y-01	ICMT	ENST00000489498.1,ENST00000343813.5	chr1	6284658:6285322:6291961:6292179:6294945:6295030,6284658:6285322:6291961:6292179:6293533:6293703,	6291962	6292179	6292055	6292055	Frame_Shift_Del	T	-	p.K193fs
LIHC	TCGA-DD-A39Y-01	GPR153	ENST00000377893.2	chr1	6311397:6311590:6313777:6314207:6314609:6315074,	6313778	6314207	6314089	6314089	Frame_Shift_Del	G	-	p.H159fs
LIHC	TCGA-DD-A39Y-01	ACOT7	ENST00000545482.1,ENST00000473466.1,ENST00000377845.3,ENST00000608083.1,ENST00000361521.4,ENST00000377842.3,ENST00000377855.2	chr1	6341312:6341346:6354923:6355040:6378551:6378638,	6354924	6355040	6354943	6354943	Frame_Shift_Del	A	-	p.F270fs
LIHC	TCGA-DD-A39Y-01	PLEKHG5	ENST00000535355.1,ENST00000377732.1,ENST00000400913.1,ENST00000340850.5,ENST00000489097.1,ENST00000377737.2,ENST00000487949.1,ENST00000537245.1,ENST00000377748.1,ENST00000377728.3,ENST00000400915.3	chr1	6527564:6527632:6527884:6528646:6529101:6529301,	6527885	6528646	6528098	6528098	Frame_Shift_Del	G	-	p.P1010fs
LIHC	TCGA-DD-A39Y-01	PLEKHG5	ENST00000535355.1,ENST00000377732.1,ENST00000400913.1,ENST00000340850.5,ENST00000489097.1,ENST00000377737.2,ENST00000487949.1,ENST00000537245.1,ENST00000377748.1,ENST00000377728.3,ENST00000400915.3	chr1	6527564:6527632:6527884:6528646:6529101:6529301,	6527885	6528646	6528137	6528137	Frame_Shift_Del	G	-	p.P997fs
LIHC	TCGA-DD-A39Y-01	NOL9	ENST00000377705.5	chr1	6604885:6604982:6605104:6605240:6609630:6609758,	6605105	6605240	6605171	6605171	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A39Y-01	NOL9	ENST00000377705.5	chr1	6605104:6605240:6609630:6609758:6610455:6610548,	6609631	6609758	6609677	6609677	Frame_Shift_Del	T	-	p.N233fs
LIHC	TCGA-DD-A39Y-01	THAP3	ENST00000377627.3,ENST00000472925.1,ENST00000054650.4	chr1	6685289:6685352:6688558:6688751:6690347:6690386,	6688559	6688751	6688612	6688612	Frame_Shift_Del	G	-	p.R43fs
LIHC	TCGA-DD-A39Y-01	ENO1	ENST00000234590.4,ENST00000464920.1	chr1	8923293:8923402:8923949:8924151:8925343:8925541,	8923950	8924151	8924065	8924065	Frame_Shift_Del	C	-	p.D319fs
LIHC	TCGA-DD-A39Y-01	CLSTN1	ENST00000435891.1,ENST00000377288.3	chr1	9795942:9796100:9801151:9801314:9803941:9804063,	9801152	9801314	9801164	9801164	Frame_Shift_Del	C	-	p.A503fs
LIHC	TCGA-DD-A39Y-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10384815:10384953:10386168:10386417:10394577:10394696,	10386169	10386417	10386335	10386335	Frame_Shift_Del	G	-	p.G948fs
LIHC	TCGA-DD-A39Y-01	KIF1B	ENST00000377086.1,ENST00000465635.1,ENST00000377081.1,ENST00000483340.1,ENST00000263934.6	chr1	10405902:10406011:10407818:10407885:10408706:10408791,	10407819	10407885	10407871	10407871	Frame_Shift_Del	T	-	p.F1284fs
LIHC	TCGA-DD-A39Y-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10425157:10425303:10425466:10425706:10428524:10428560,	10425467	10425706	10425485	10425485	Frame_Shift_Del	T	-	p.F1511fs
LIHC	TCGA-DD-A39Y-01	PGD	ENST00000491493.1,ENST00000538557.1,ENST00000270776.8,ENST00000465632.1	chr1	10459688:10459761:10460449:10460629:10464217:10464333,10459688:10459761:10460449:10460629:10463127:10463193,	10460450	10460629	10460516	10460516	Frame_Shift_Del	A	-	p.K38fs
LIHC	TCGA-DD-A39Y-01	PGD	ENST00000477958.1	chr1	10459688:10459761:10460432:10460629:10463127:10463193,	10460433	10460629	10460516	10460516	Frame_Shift_Del	A	-	p.K38fs
LIHC	TCGA-DD-A39Y-01	CASZ1	ENST00000377022.3,ENST00000344008.5	chr1	10710748:10710812:10710997:10711133:10713433:10714275,	10710998	10711133	10711047	10711047	Frame_Shift_Del	G	-	p.H923fs
LIHC	TCGA-DD-A39Y-01	CASZ1	ENST00000377022.3,ENST00000344008.5	chr1	10710748:10710812:10710997:10711133:10713433:10714275,	10710998	10711133	10711112	10711112	Frame_Shift_Del	G	-	p.P901fs
LIHC	TCGA-DD-A39Y-01	TARDBP	ENST00000473118.1,ENST00000473869.1,ENST00000240185.3,ENST00000315091.3	chr1	11073972:11074022:11076900:11077064:11078789:11078930,	11076901	11077064	11077023	11077023	Frame_Shift_Del	A	-	p.K121fs
LIHC	TCGA-DD-A39Y-01	EXOSC10	ENST00000470611.1	chr1	11136898:11137005:11137386:11137500:11137657:11137708,	11137387	11137500	11137496	11137496	Frame_Shift_Del	A	-	p.I654fs
LIHC	TCGA-DD-A39Y-01	EXOSC10	ENST00000304457.7,ENST00000376936.4	chr1	11136898:11137005:11137421:11137500:11137657:11137708,	11137422	11137500	11137496	11137496	Frame_Shift_Del	A	-	p.I654fs
LIHC	TCGA-DD-A39Y-01	FBXO44	ENST00000376768.1	chr1	11718323:11718450:11718589:11718685:11718792:11718925,11718325:11718421:11718589:11718685:11718792:11718925,	11718590	11718685	11718621	11718621	Frame_Shift_Del	A	-	p.K142fs
LIHC	TCGA-DD-A39Y-01	PLOD1	ENST00000376369.3,ENST00000196061.4	chr1	12023588:12023693:12024231:12024357:12024700:12024842,	12024232	12024357	12024315	12024315	Frame_Shift_Del	C	-	p.A429fs
LIHC	TCGA-DD-A39Y-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12052611:12052747:12056212:12056375:12057353:12057478,	12056213	12056375	12056332	12056332	Frame_Shift_Del	C	-	p.A144fs
LIHC	TCGA-DD-A39Y-01	MIIP	ENST00000235332.4,ENST00000436478.2	chr1	12081701:12081897:12082151:12082499:12082889:12082974,	12082152	12082499	12082258	12082258	Frame_Shift_Del	G	-	p.W74fs
LIHC	TCGA-DD-A39Y-01	MIIP	ENST00000235332.4,ENST00000436478.2	chr1	12081701:12081897:12082151:12082499:12082889:12082974,	12082152	12082499	12082405	12082405	Frame_Shift_Del	G	-	p.R123fs
LIHC	TCGA-DD-A39Y-01	MIIP	ENST00000235332.4,ENST00000436478.2	chr1	12081701:12081897:12082151:12082499:12082889:12082974,	12082152	12082499	12082459	12082459	Frame_Shift_Del	C	-	p.T141fs
LIHC	TCGA-DD-A39Y-01	VPS13D	ENST00000356315.4,ENST00000358136.3	chr1	12304593:12304674:12309279:12309396:12313778:12313883,	12309280	12309396	12309339	12309339	Frame_Shift_Del	T	-	p.P169fs
LIHC	TCGA-DD-A39Y-01	VPS13D	ENST00000356315.4,ENST00000460333.1,ENST00000011700.6,ENST00000358136.3	chr1	12409220:12409431:12414030:12414278:12415955:12416147,	12414031	12414278	12414184	12414184	Frame_Shift_Del	T	-	p.D3195fs
LIHC	TCGA-DD-A39Y-01	DHRS3	ENST00000376223.2	chr1	12628420:12628453:12632755:12632881:12640550:12640694,12628420:12628453:12632755:12632881:12638745:12638984,	12632756	12632881	12632781	12632781	Frame_Shift_Del	T	-	p.M267fs
LIHC	TCGA-DD-A39Y-01	AADACL3	ENST00000359318.5	chr1	12776117:12776347:12779476:12779693:12780884:12780948,	12779477	12779693	12779672	12779672	Frame_Shift_Del	G	-	p.G66fs
LIHC	TCGA-DD-A39Y-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107094	14107094	Frame_Shift_Del	C	-	p.A935fs
LIHC	TCGA-DD-A39Y-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108857	14108857	Frame_Shift_Del	A	-	p.K1523fs
LIHC	TCGA-DD-A39Y-01	PRDM2	ENST00000505823.1,ENST00000503842.1	chr1	14099572:14099683:14142921:14143065:14149653:14149914,	14142922	14143065	14143057	14143057	Frame_Shift_Del	C	-	p.S216fs
LIHC	TCGA-DD-A39Y-01	FHAD1	ENST00000375998.4,ENST00000375999.3,ENST00000358897.4,ENST00000417793.1	chr1	15578280:15578373:15598818:15599025:15615894:15616137,	15598819	15599025	15598934	15598934	Frame_Shift_Del	A	-	p.Q70fs
LIHC	TCGA-DD-A39Y-01	FHAD1	ENST00000375998.4,ENST00000375999.3,ENST00000358897.4,ENST00000375996.2,ENST00000417793.1	chr1	15644319:15644424:15650947:15651055:15653554:15653638,	15650948	15651055	15651034	15651034	Frame_Shift_Del	T	-	p.N484fs
LIHC	TCGA-DD-A39Y-01	FHAD1	ENST00000375998.4,ENST00000481324.1,ENST00000314740.8,ENST00000375999.3,ENST00000471347.1,ENST00000358897.4,ENST00000314668.9,ENST00000444385.1,ENST00000529606.1,ENST00000417793.1,ENST00000477846.1	chr1	15702195:15702226:15707196:15707292:15707726:15707947,	15707197	15707292	15707285	15707285	Frame_Shift_Del	A	-	p.E1243fs
LIHC	TCGA-DD-A39Y-01	CTRC	ENST00000483406.1,ENST00000375949.4	chr1	15766845:15766887:15766988:15767086:15768942:15769068,	15766989	15767086	15767023	15767023	Frame_Shift_Del	G	-	p.R56fs
LIHC	TCGA-DD-A39Y-01	CELA2B	ENST00000494280.1,ENST00000375910.3	chr1	15807592:15807690:15808759:15808888:15809758:15809863,	15808760	15808888	15808872	15808872	Frame_Shift_Del	G	-	p.D114fs
LIHC	TCGA-DD-A39Y-01	PLEKHM2	ENST00000375793.2	chr1	16045032:16045120:16046228:16046415:16051811:16052040,	16046229	16046415	16046251	16046251	Frame_Shift_Del	C	-	p.A163fs
LIHC	TCGA-DD-A39Y-01	PLEKHM2	ENST00000375799.3,ENST00000375793.2,ENST00000477849.1	chr1	16056339:16056424:16057026:16057217:16057686:16057752,	16057027	16057217	16057074	16057074	Frame_Shift_Del	C	-	p.D752fs
LIHC	TCGA-DD-A39Y-01	TMEM82	ENST00000375782.1	chr1	16069514:16069689:16070654:16071075:16073361:16073549,	16070655	16071075	16070988	16070988	Frame_Shift_Del	A	-	p.N224fs
LIHC	TCGA-DD-A39Y-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16095022:16095125:16096903:16097073:16101112:16101126,	16096904	16097073	16096934	16096934	Frame_Shift_Del	C	-	p.S191fs
LIHC	TCGA-DD-A39Y-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16095022:16095125:16096903:16097073:16101112:16101126,	16096904	16097073	16097050	16097050	Frame_Shift_Del	C	-	p.P230fs
LIHC	TCGA-DD-A39Y-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16377972:16378042:16378204:16378315:16378692:16378906,	16378205	16378315	16378297	16378297	Frame_Shift_Del	G	-	p.G465fs
LIHC	TCGA-DD-A39Y-01	ARHGEF19	ENST00000270747.3	chr1	16534438:16534720:16535137:16535578:16538996:16539104,	16535138	16535578	16535335	16535335	Frame_Shift_Del	G	-	p.P72fs
LIHC	TCGA-DD-A39Y-01	CROCC	ENST00000467938.1	chr1	17273361:17273486:17279796:17279976:17280717:17280852,	17279797	17279976	17279921	17279921	Frame_Shift_Del	C	-	p.A1044fs
LIHC	TCGA-DD-A39Y-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1	chr1	17320123:17320330:17322470:17322659:17322748:17322778,	17322471	17322659	17322499	17322499	Frame_Shift_Del	C	-	p.G500fs
LIHC	TCGA-DD-A39Y-01	PADI1	ENST00000537499.1,ENST00000413717.2	chr1	17559313:17559465:17563808:17563953:17565110:17565204,17559849:17559933:17563808:17563953:17565110:17565204,	17563809	17563953	17563921	17563921	Frame_Shift_Del	T	-	p.F476fs
LIHC	TCGA-DD-A39Y-01	PADI1	ENST00000537499.1,ENST00000375471.4,ENST00000413717.2	chr1	17563808:17563953:17565110:17565204:17566198:17566278,	17565111	17565204	17565183	17565183	Frame_Shift_Del	G	-	p.G511fs
LIHC	TCGA-DD-A39Y-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17747218:17747324:17748698:17748787:17749200:17749332,	17748699	17748787	17748705	17748705	Frame_Shift_Del	G	-	p.P246fs
LIHC	TCGA-DD-A39Y-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17752036:17752180:17755601:17755695:17764725:17765018,	17755602	17755695	17755679	17755679	Frame_Shift_Del	T	-	p.K101fs
LIHC	TCGA-DD-A39Y-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000375420.3,ENST00000434513.1,ENST00000475356.1,ENST00000167825.4,ENST00000452522.1	chr1	17961329:17961511:17964382:17964498:17965056:17965184,	17964383	17964498	17964399	17964399	Frame_Shift_Del	C	-	p.G648fs
LIHC	TCGA-DD-A39Y-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000167825.4,ENST00000452522.1	chr1	18014067:18014242:18021652:18021775:18023342:18024144,	18021653	18021775	18021704	18021704	Frame_Shift_Del	G	-	p.W1079fs
LIHC	TCGA-DD-A39Y-01	UBR4	ENST00000375226.2,ENST00000375224.1,ENST00000375254.3,ENST00000429347.2,ENST00000375267.2,ENST00000543981.1,ENST00000375217.2	chr1	19404469:19404560:19407842:19408067:19410997:19411192,	19407843	19408067	19407933	19407933	Frame_Shift_Del	G	-	p.P5048fs
LIHC	TCGA-DD-A39Y-01	UBR4	ENST00000375226.2,ENST00000375224.1,ENST00000375254.3,ENST00000375267.2,ENST00000375217.2	chr1	19423686:19423774:19426090:19426171:19426869:19427067,	19426091	19426171	19426120	19426120	Frame_Shift_Del	A	-	p.Y4425fs
LIHC	TCGA-DD-A39Y-01	EMC1	ENST00000375199.3,ENST00000477853.1,ENST00000375208.3	chr1	19557337:19557457:19557754:19557916:19559117:19559267,	19557755	19557916	19557849	19557849	Frame_Shift_Del	G	-	p.P617fs
LIHC	TCGA-DD-A39Y-01	MRTO4	ENST00000493700.1	chr1	19578328:19578742:19581275:19581334:19582441:19582545,	19581276	19581334	19581322	19581322	Frame_Shift_Del	C	-	p.N25fs
LIHC	TCGA-DD-A39Y-01	CAPZB	ENST00000375142.1,ENST00000264202.6,ENST00000482808.1	chr1	19711998:19712120:19746154:19746244:19811929:19811940,	19746155	19746244	19746177	19746177	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-DD-A39Y-01	TMCO4	ENST00000489135.1,ENST00000294543.6,ENST00000375122.2,ENST00000375127.1	chr1	20063864:20063949:20066316:20066453:20067269:20067434,	20066317	20066453	20066439	20066439	Frame_Shift_Del	G	-	p.L353fs
LIHC	TCGA-DD-A39Y-01	VWA5B1	ENST00000473325.1,ENST00000485375.2,ENST00000375079.2,ENST00000289815.8,ENST00000289825.4,ENST00000375083.4	chr1	20645874:20645999:20649848:20650025:20654382:20654493,	20649849	20650025	20649876	20649876	Frame_Shift_Del	A	-	p.K332fs
LIHC	TCGA-DD-A39Y-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21143890:21144031:21151592:21151691:21154109:21154191,	21151593	21151691	21151665	21151665	Frame_Shift_Del	C	-	p.W1382fs
LIHC	TCGA-DD-A39Y-01	EIF4G3	ENST00000411888.1	chr1	21306826:21306941:21307540:21307720:21324093:21324126,21306826:21306941:21307540:21307720:21329205:21329280,21306826:21306941:21307540:21307720:21327691:21327805,	21307541	21307720	21307682	21307682	Frame_Shift_Del	G	-	p.T30fs
LIHC	TCGA-DD-A39Y-01	ECE1	ENST00000264205.6,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21551847:21551933:21553651:21553719:21554423:21554534,	21553652	21553719	21553711	21553711	Frame_Shift_Del	T	-	p.N581fs
LIHC	TCGA-DD-A39Y-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000481130.2,ENST00000374893.6,ENST00000463334.2,ENST00000415912.2,ENST00000436918.2,ENST00000527991.1	chr1	21599327:21599404:21605683:21605825:21616562:21616649,	21605684	21605825	21605807	21605807	Frame_Shift_Del	G	-	p.R37fs
LIHC	TCGA-DD-A39Y-01	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21935342:21935429:21936067:21936139:21936612:21936717,	21936068	21936139	21936094	21936094	Frame_Shift_Del	G	-	p.L349fs
LIHC	TCGA-DD-A39Y-01	USP48	ENST00000529637.1,ENST00000464577.1,ENST00000308271.9	chr1	22016466:22016592:22021558:22021714:22027990:22028095,	22021559	22021714	22021574	22021574	Frame_Shift_Del	T	-	p.K956fs
LIHC	TCGA-DD-A39Y-01	USP48	ENST00000529637.1	chr1	22032959:22033082:22033236:22033400:22041881:22041950,	22033237	22033400	22033370	22033370	Frame_Shift_Del	A	-	p.L664fs
LIHC	TCGA-DD-A39Y-01	USP48	ENST00000529637.1,ENST00000421625.2,ENST00000400301.1,ENST00000308271.9	chr1	22073559:22073642:22074630:22074764:22077999:22078108,	22074631	22074764	22074731	22074731	Frame_Shift_Del	A	-	p.C270fs
LIHC	TCGA-DD-A39Y-01	HSPG2	ENST00000374695.3	chr1	22155327:22155572:22155875:22156097:22156485:22156584,	22155876	22156097	22156038	22156038	Frame_Shift_Del	G	-	p.L3944fs
LIHC	TCGA-DD-A39Y-01	HSPG2	ENST00000493940.2,ENST00000374695.3	chr1	22179456:22179563:22180685:22180836:22181103:22181149,	22180686	22180836	22180748	22180748	Frame_Shift_Del	T	-	p.K2126fs
LIHC	TCGA-DD-A39Y-01	HSPG2	ENST00000374695.3	chr1	22186058:22186169:22186327:22186495:22186669:22186728,	22186328	22186495	22186376	22186376	Frame_Shift_Del	G	-	p.R1712fs
LIHC	TCGA-DD-A39Y-01	HSPG2	ENST00000374695.3	chr1	22186058:22186169:22186327:22186495:22186669:22186728,	22186328	22186495	22186442	22186442	Frame_Shift_Del	G	-	p.Q1690fs
LIHC	TCGA-DD-A39Y-01	CDC42	ENST00000315554.8,ENST00000411827.1,ENST00000344548.3,ENST00000400259.1	chr1	22404921:22405076:22408214:22408287:22412931:22413041,	22408215	22408287	22408273	22408273	Frame_Shift_Del	T	-	p.L55fs
LIHC	TCGA-DD-A39Y-01	ZBTB40	ENST00000375647.4,ENST00000404138.1,ENST00000400239.2	chr1	22817892:22818026:22827984:22828177:22828791:22828934,	22827985	22828177	22828085	22828085	Frame_Shift_Del	C	-	p.S311fs
LIHC	TCGA-DD-A39Y-01	C1QB	ENST00000432749.2	chr1	22979681:22979796:22985932:22986136:22987304:22987331,22980500:22980653:22985932:22986136:22987304:22987385,	22985933	22986136	22986049	22986049	Frame_Shift_Del	C	-	p.P33fs
LIHC	TCGA-DD-A39Y-01	ASAP3	ENST00000437606.2,ENST00000495646.1,ENST00000336689.3	chr1	23758188:23758411:23759569:23759765:23759917:23760025,	23759570	23759765	23759617	23759617	Frame_Shift_Del	T	-	p.N759fs
LIHC	TCGA-DD-A39Y-01	PITHD1	ENST00000374524.1,ENST00000246151.4	chr1	24112164:24112269:24112804:24112913:24113764:24114722,	24112805	24112913	24112814	24112814	Frame_Shift_Del	T	-	p.R145fs
LIHC	TCGA-DD-A39Y-01	LYPLA2	ENST00000495365.1,ENST00000374514.3,ENST00000374502.3,ENST00000374503.3,ENST00000421070.1,ENST00000400061.1,ENST00000374505.2	chr1	24119146:24119250:24119497:24119529:24119640:24119706,	24119498	24119529	24119502	24119502	Frame_Shift_Del	T	-	p.I28fs
LIHC	TCGA-DD-A39Y-01	GRHL3	ENST00000342072.4,ENST00000236255.4,ENST00000361548.4,ENST00000356046.2,ENST00000350501.5,ENST00000528064.1	chr1	24663567:24663641:24664125:24664279:24664481:24664593,	24664126	24664279	24664169	24664169	Frame_Shift_Del	A	-	p.K244fs
LIHC	TCGA-DD-A39Y-01	SRRM1	ENST00000596378.1,ENST00000479034.1,ENST00000447431.2,ENST00000374389.4	chr1	24989150:24989295:24993305:24993416:24995613:24995755,24989673:24989715:24993305:24993416:24995613:24995755,	24993306	24993416	24993329	24993329	Frame_Shift_Del	C	-	p.S551fs
LIHC	TCGA-DD-A39Y-01	SYF2	ENST00000236273.4	chr1	25554608:25554726:25555488:25555614:25558594:25558702,	25555489	25555614	25555531	25555531	Frame_Shift_Del	T	-	p.K72fs
LIHC	TCGA-DD-A39Y-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104682	26104682	Frame_Shift_Del	G	-	p.M448fs
LIHC	TCGA-DD-A39Y-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104704	26104704	Frame_Shift_Del	G	-	p.G457fs
LIHC	TCGA-DD-A39Y-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000475314.1,ENST00000374332.4	chr1	26104595:26104815:26107430:26107603:26109075:26109191,	26107431	26107603	26107567	26107567	Frame_Shift_Del	C	-	p.N538fs
LIHC	TCGA-DD-A39Y-01	TRIM63	ENST00000374272.3	chr1	26380383:26380455:26383693:26383818:26384118:26384141,	26383694	26383818	26383701	26383701	Frame_Shift_Del	A	-	p.F324fs
LIHC	TCGA-DD-A39Y-01	UBXN11	ENST00000494942.1,ENST00000374222.1,ENST00000475591.1,ENST00000374217.2,ENST00000472155.1,ENST00000314675.7,ENST00000374221.3,ENST00000357089.4,ENST00000374223.1	chr1	26609354:26609428:26610632:26610736:26610852:26610952,	26610633	26610736	26610651	26610651	Frame_Shift_Del	G	-	p.P233fs
LIHC	TCGA-DD-A39Y-01	UBXN11	ENST00000496466.1	chr1	26609354:26609428:26610632:26610772:26610852:26610952,	26610633	26610772	26610651	26610651	Frame_Shift_Del	G	-	p.P233fs
LIHC	TCGA-DD-A39Y-01	UBXN11	ENST00000374222.1,ENST00000475591.1,ENST00000374217.2,ENST00000472155.1,ENST00000374215.1,ENST00000357089.4	chr1	26628184:26628213:26629303:26629409:26629533:26629658,26628184:26628213:26629303:26629409:26633082:26633100,	26629304	26629409	26629324	26629324	Frame_Shift_Del	G	-	p.P17fs
LIHC	TCGA-DD-A39Y-01	DHDDS	ENST00000360009.2,ENST00000434391.2,ENST00000236342.7,ENST00000416052.1	chr1	26772854:26772923:26774049:26774151:26784281:26784396,	26774050	26774151	26774121	26774121	Frame_Shift_Del	G	-	p.W171fs
LIHC	TCGA-DD-A39Y-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088659	27088659	Frame_Shift_Del	C	-	p.N756fs
LIHC	TCGA-DD-A39Y-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088669	27088669	Frame_Shift_Del	C	-	p.P760fs
LIHC	TCGA-DD-A39Y-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440400	27440400	Frame_Shift_Del	C	-	p.A244fs
LIHC	TCGA-DD-A39Y-01	WDTC1	ENST00000491239.2	chr1	27627716:27627952:27630111:27631684:27632676:27632941,	27630112	27631684	27631580	27631580	Frame_Shift_Del	G	-	p.G578fs
LIHC	TCGA-DD-A39Y-01	WDTC1	ENST00000361771.3,ENST00000319394.3	chr1	27630111:27630286:27631491:27631684:27632676:27632763,	27631492	27631684	27631580	27631580	Frame_Shift_Del	G	-	p.G578fs
LIHC	TCGA-DD-A39Y-01	WDTC1	ENST00000447062.2	chr1	27630111:27630286:27631549:27631684:27632676:27632763,	27631550	27631684	27631580	27631580	Frame_Shift_Del	G	-	p.G578fs
LIHC	TCGA-DD-A39Y-01	SYTL1	ENST00000483926.1,ENST00000543823.1,ENST00000490170.1,ENST00000318074.5	chr1	27677748:27677827:27677946:27678046:27679773:27679979,	27677947	27678046	27677983	27677983	Frame_Shift_Del	G	-	p.W427fs
LIHC	TCGA-DD-A39Y-01	MAP3K6	ENST00000493901.1,ENST00000357582.2	chr1	27690694:27690885:27691151:27691175:27691263:27691293,	27691152	27691175	27691165	27691165	Frame_Shift_Del	A	-	p.F164fs
LIHC	TCGA-DD-A39Y-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875231	27875231	Frame_Shift_Del	A	-	p.F1132fs
LIHC	TCGA-DD-A39Y-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875522	27875522	Frame_Shift_Del	G	-	p.A1035fs
LIHC	TCGA-DD-A39Y-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27877218	27877218	Frame_Shift_Del	C	-	p.G470fs
LIHC	TCGA-DD-A39Y-01	IFI6	ENST00000362020.4	chr1	27994869:27994886:27994968:27995046:27995755:27995857,27994736:27994886:27994968:27995046:27995743:27995857,	27994969	27995046	27995037	27995037	Frame_Shift_Del	T	-	p.K27fs
LIHC	TCGA-DD-A39Y-01	THEMIS2	ENST00000373925.1	chr1	28203194:28203239:28206154:28206565:28208481:28208588,28203194:28203239:28206154:28206565:28211805:28211928,	28206155	28206565	28206535	28206535	Frame_Shift_Del	C	-	p.P206fs
LIHC	TCGA-DD-A39Y-01	RPA2	ENST00000313433.7,ENST00000444045.1,ENST00000373909.3,ENST00000373912.3	chr1	28224143:28224218:28233438:28233552:28233691:28233793,	28233439	28233552	28233508	28233508	Frame_Shift_Del	G	-	p.T88fs
LIHC	TCGA-DD-A39Y-01	EYA3	ENST00000373863.3,ENST00000373871.3,ENST00000436342.2,ENST00000540618.1,ENST00000471498.1	chr1	28369081:28369161:28374893:28374937:28384504:28384598,	28374894	28374937	28374929	28374929	Frame_Shift_Del	T	-	p.K14fs
LIHC	TCGA-DD-A39Y-01	DNAJC8	ENST00000488868.1,ENST00000489277.1,ENST00000263697.4,ENST00000482674.1	chr1	28537081:28537148:28541450:28541507:28555432:28555534,	28541451	28541507	28541464	28541464	Frame_Shift_Del	T	-	p.K75fs
LIHC	TCGA-DD-A39Y-01	MED18	ENST00000398997.2,ENST00000373842.4	chr1	28655572:28655691:28657107:28657246:28660927:28661096,	28657108	28657246	28657210	28657210	Frame_Shift_Del	G	-	p.G14fs
LIHC	TCGA-DD-A39Y-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800273	28800273	Frame_Shift_Del	C	-	p.S344fs
LIHC	TCGA-DD-A39Y-01	RCC1	ENST00000373832.1	chr1	28844777:28844820:28856369:28856451:28858314:28858330,	28856370	28856451	28856410	28856410	Frame_Shift_Del	C	-	p.S11fs
LIHC	TCGA-DD-A39Y-01	TRNAU1AP	ENST00000484775.1,ENST00000491577.1,ENST00000373830.3,ENST00000480930.1	chr1	28891214:28891346:28893805:28893925:28897687:28897850,	28893806	28893925	28893884	28893884	Frame_Shift_Del	G	-	p.L163fs
LIHC	TCGA-DD-A39Y-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069013	29069013	Frame_Shift_Del	G	-	p.T77fs
LIHC	TCGA-DD-A39Y-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29362337:29362435:29365765:29365938:29379615:29379824,	29365766	29365938	29365885	29365885	Frame_Shift_Del	C	-	p.A528fs
LIHC	TCGA-DD-A39Y-01	MATN1	ENST00000477320.1,ENST00000373765.4	chr1	31188872:31189172:31189636:31189762:31191581:31191804,	31189637	31189762	31189701	31189701	Frame_Shift_Del	G	-	p.P242fs
LIHC	TCGA-DD-A39Y-01	PUM1	ENST00000524516.1,ENST00000257075.5,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3	chr1	31501642:31501711:31532050:31532424:31538462:31538523,	31532051	31532424	31532130	31532130	Frame_Shift_Del	C	-	p.G97fs
LIHC	TCGA-DD-A39Y-01	PUM1	ENST00000524516.1,ENST00000257075.5,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3	chr1	31501642:31501711:31532050:31532424:31538462:31538523,	31532051	31532424	31532353	31532353	Frame_Shift_Del	G	-	p.H21fs
LIHC	TCGA-DD-A39Y-01	PUM1	ENST00000526215.1,ENST00000525948.1	chr1	31501642:31501711:31532145:31532424:31538462:31538523,	31532146	31532424	31532353	31532353	Frame_Shift_Del	G	-	p.H21fs
LIHC	TCGA-DD-A39Y-01	FABP3	ENST00000482018.1	chr1	31840239:31840341:31842231:31842404:31845788:31845888,	31842232	31842404	31842273	31842273	Frame_Shift_Del	C	-	p.V69fs
LIHC	TCGA-DD-A39Y-01	HCRTR1	ENST00000403528.2	chr1	32084356:32084417:32084651:32084992:32086443:32086687,32084356:32084417:32084651:32084992:32085132:32085311,	32084652	32084992	32084855	32084855	Frame_Shift_Del	C	-	p.S21fs
LIHC	TCGA-DD-A39Y-01	PEF1	ENST00000440872.2	chr1	32100434:32100544:32100822:32101123:32110441:32110474,	32100823	32101123	32101058	32101058	Frame_Shift_Del	G	-	p.P30fs
LIHC	TCGA-DD-A39Y-01	COL16A1	ENST00000479100.1	chr1	32134402:32134456:32136156:32136247:32137215:32137260,	32136157	32136247	32136240	32136240	Frame_Shift_Del	G	-	p.P1053fs
LIHC	TCGA-DD-A39Y-01	COL16A1	ENST00000271069.6,ENST00000373672.3	chr1	32134402:32134456:32136202:32136247:32137215:32137260,	32136203	32136247	32136240	32136240	Frame_Shift_Del	G	-	p.P1053fs
LIHC	TCGA-DD-A39Y-01	SPOCD1	ENST00000533231.1,ENST00000360482.2,ENST00000257100.3,ENST00000373648.2,ENST00000531039.1	chr1	32259827:32259836:32262190:32262316:32263807:32263924,	32262191	32262316	32262193	32262193	Frame_Shift_Del	C	-	p.V757fs
LIHC	TCGA-DD-A39Y-01	SPOCD1	ENST00000360482.2,ENST00000373648.2	chr1	32267264:32267306:32279551:32280973:32281561:32281580,	32279552	32280973	32279593	32279593	Frame_Shift_Del	C	-	p.D448fs
LIHC	TCGA-DD-A39Y-01	KHDRBS1	ENST00000492989.1	chr1	32495898:32496023:32498788:32498935:32502510:32502644,	32498789	32498935	32498815	32498815	Frame_Shift_Del	C	-	p.D217fs
LIHC	TCGA-DD-A39Y-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503533	32503533	Frame_Shift_Del	C	-	p.P337fs
LIHC	TCGA-DD-A39Y-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503533	32503533	Frame_Shift_Del	C	-	p.P337fs
LIHC	TCGA-DD-A39Y-01	KPNA6	ENST00000373625.3,ENST00000537234.1,ENST00000545542.1,ENST00000469790.1	chr1	32623867:32623962:32625000:32625132:32626215:32626304,	32625001	32625132	32625122	32625122	Frame_Shift_Del	T	-	p.V183fs
LIHC	TCGA-DD-A39Y-01	LCK	ENST00000333070.4,ENST00000469765.1,ENST00000469956.1,ENST00000336890.5	chr1	32741549:32741664:32741937:32742090:32742207:32742387,	32741938	32742090	32742059	32742059	Frame_Shift_Del	G	-	p.L251fs
LIHC	TCGA-DD-A39Y-01	BSDC1	ENST00000527163.1,ENST00000446293.2,ENST00000373520.4,ENST00000527513.1,ENST00000526031.1,ENST00000444377.1,ENST00000455895.2,ENST00000449308.1,ENST00000341071.7,ENST00000419121.2	chr1	32843570:32843649:32843815:32843884:32844324:32844440,	32843816	32843884	32843841	32843841	Frame_Shift_Del	A	-	p.F208fs
LIHC	TCGA-DD-A39Y-01	KIAA1522	ENST00000294521.3	chr1	33233662:33233718:33234252:33234376:33238465:33238798,	33234253	33234376	33234310	33234310	Frame_Shift_Del	T	-	p.Y174fs
LIHC	TCGA-DD-A39Y-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33235771	33235771	Frame_Shift_Del	G	-	p.G331fs
LIHC	TCGA-DD-A39Y-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33235789	33235789	Frame_Shift_Del	C	-	p.P337fs
LIHC	TCGA-DD-A39Y-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236817	33236817	Frame_Shift_Del	C	-	p.S679fs
LIHC	TCGA-DD-A39Y-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237409	33237409	Frame_Shift_Del	C	-	p.P877fs
LIHC	TCGA-DD-A39Y-01	YARS	ENST00000481895.1,ENST00000373477.4	chr1	33251970:33252048:33252540:33252676:33256762:33256855,	33252541	33252676	33252567	33252567	Frame_Shift_Del	T	-	p.K265fs
LIHC	TCGA-DD-A39Y-01	YARS	ENST00000481895.1,ENST00000373477.4	chr1	33251970:33252048:33252540:33252676:33256762:33256855,	33252541	33252676	33252629	33252629	Frame_Shift_Del	T	-	p.K244fs
LIHC	TCGA-DD-A39Y-01	TMEM54	ENST00000373463.3,ENST00000463914.1	chr1	33360905:33361040:33361155:33361344:33363726:33363920,33360905:33361040:33361155:33361344:33361510:33361570,	33361156	33361344	33361177	33361177	Frame_Shift_Del	G	-	p.P146fs
LIHC	TCGA-DD-A39Y-01	TMEM54	ENST00000329151.5	chr1	33360905:33361040:33361155:33361245:33361510:33361570,33360905:33361040:33361155:33361245:33363726:33363920,	33361156	33361245	33361177	33361177	Frame_Shift_Del	G	-	p.P146fs
LIHC	TCGA-DD-A39Y-01	RNF19B	ENST00000235150.4,ENST00000356990.5,ENST00000373456.7	chr1	33403997:33404129:33407852:33408060:33409619:33409760,	33407853	33408060	33407861	33407861	Frame_Shift_Del	T	-	p.K534fs
LIHC	TCGA-DD-A39Y-01	PHC2	ENST00000485928.1,ENST00000467894.1	chr1	33797875:33798005:33799785:33799893:33815197:33815251,	33799786	33799893	33799792	33799792	Frame_Shift_Del	G	-	p.Q553fs
LIHC	TCGA-DD-A39Y-01	PHC2	ENST00000486897.1	chr1	33797875:33798005:33799785:33799891:33815197:33815251,	33799786	33799891	33799792	33799792	Frame_Shift_Del	G	-	p.Q553fs
LIHC	TCGA-DD-A39Y-01	PHC2	ENST00000257118.5,ENST00000419414.2,ENST00000431992.1,ENST00000373422.3,ENST00000373416.1	chr1	33797875:33798005:33799690:33799893:33815197:33815251,33797875:33798005:33799690:33799893:33820001:33820167,	33799691	33799893	33799792	33799792	Frame_Shift_Del	G	-	p.Q553fs
LIHC	TCGA-DD-A39Y-01	ZSCAN20	ENST00000373413.2,ENST00000480917.1	chr1	33938260:33938292:33944779:33945306:33954064:33954251,	33944780	33945306	33945082	33945082	Frame_Shift_Del	C	-	p.P65fs
LIHC	TCGA-DD-A39Y-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485090	35485090	Frame_Shift_Del	T	-	p.M98fs
LIHC	TCGA-DD-A39Y-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485108	35485108	Frame_Shift_Del	A	-	p.C92fs
LIHC	TCGA-DD-A39Y-01	ZMYM1	ENST00000359858.4,ENST00000417119.1,ENST00000463393.1,ENST00000373330.1,ENST00000373329.1	chr1	35570157:35570370:35575894:35576048:35577372:35577378,	35575895	35576048	35576035	35576035	Frame_Shift_Del	G	-	p.M316fs
LIHC	TCGA-DD-A39Y-01	ZMYM4	ENST00000441447.1	chr1	35734633:35734686:35790960:35791006:35824525:35824830,35761527:35761589:35790960:35791006:35824525:35824830,	35790961	35791006	35790968	35790968	Frame_Shift_Del	A	-	p.Q16fs
LIHC	TCGA-DD-A39Y-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836080	35836080	Frame_Shift_Del	A	-	p.K346fs
LIHC	TCGA-DD-A39Y-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35855548:35855699:35857812:35857953:35858247:35858285,	35857813	35857953	35857848	35857848	Frame_Shift_Del	C	-	p.P876fs
LIHC	TCGA-DD-A39Y-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2	chr1	35908506:35908629:35909761:35909904:35913773:35913800,	35909762	35909904	35909806	35909806	Frame_Shift_Del	T	-	p.K871fs
LIHC	TCGA-DD-A39Y-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2	chr1	35908506:35908629:35909761:35909904:35913773:35913800,	35909762	35909904	35909886	35909886	Frame_Shift_Del	A	-	p.F844fs
LIHC	TCGA-DD-A39Y-01	NCDN	ENST00000373253.3,ENST00000423723.1,ENST00000356090.4,ENST00000373243.2	chr1	36028068:36028234:36028802:36029027:36029367:36029510,	36028803	36029027	36028922	36028922	Frame_Shift_Del	C	-	p.S502fs
LIHC	TCGA-DD-A39Y-01	CLSPN	ENST00000520551.1,ENST00000373220.3,ENST00000318121.3,ENST00000251195.5	chr1	36211051:36211163:36212366:36212593:36213507:36213662,	36212367	36212593	36212446	36212446	Frame_Shift_Del	T	-	p.K925fs
LIHC	TCGA-DD-A39Y-01	CLSPN	ENST00000520551.1,ENST00000373220.3,ENST00000318121.3,ENST00000251195.5	chr1	36227598:36227671:36228004:36228082:36228760:36228922,	36228005	36228082	36228077	36228077	Frame_Shift_Del	T	-	p.K250fs
LIHC	TCGA-DD-A39Y-01	CLSPN	ENST00000520551.1,ENST00000373220.3,ENST00000318121.3,ENST00000251195.5	chr1	36228004:36228082:36228760:36228922:36229866:36230315,	36228761	36228922	36228768	36228768	Frame_Shift_Del	T	-	p.K246fs
LIHC	TCGA-DD-A39Y-01	AGO1	ENST00000373204.4,ENST00000373206.1	chr1	36358697:36358879:36359274:36359411:36359637:36359772,	36359275	36359411	36359382	36359382	Frame_Shift_Del	C	-	p.A207fs
LIHC	TCGA-DD-A39Y-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762241	36762241	Frame_Shift_Del	A	-	p.K726fs
LIHC	TCGA-DD-A39Y-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36766486:36766685:36767153:36767297:36769396:36769749,	36767154	36767297	36767228	36767228	Frame_Shift_Del	T	-	p.D859fs
LIHC	TCGA-DD-A39Y-01	STK40	ENST00000359297.2,ENST00000373132.3,ENST00000373129.3,ENST00000373130.3	chr1	36808964:36809049:36809460:36809580:36809720:36809865,	36809461	36809580	36809486	36809486	Frame_Shift_Del	C	-	p.A327fs
LIHC	TCGA-DD-A39Y-01	STK40	ENST00000359297.2,ENST00000373132.3,ENST00000373129.3,ENST00000373130.3	chr1	36808964:36809049:36809460:36809580:36809720:36809865,	36809461	36809580	36809519	36809519	Frame_Shift_Del	G	-	p.Q317fs
LIHC	TCGA-DD-A39Y-01	STK40	ENST00000482458.1,ENST00000373130.3	chr1	36823839:36823983:36824337:36824438:36826821:36826941,	36824338	36824438	36824418	36824418	Frame_Shift_Del	G	-	p.R40fs
LIHC	TCGA-DD-A39Y-01	STK40	ENST00000473733.1,ENST00000460417.1,ENST00000373132.3,ENST00000373129.3	chr1	36823839:36823983:36824337:36824423:36826821:36826941,	36824338	36824423	36824418	36824418	Frame_Shift_Del	G	-	p.R40fs
LIHC	TCGA-DD-A39Y-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.P468fs
LIHC	TCGA-DD-A39Y-01	MEAF6	ENST00000373074.1,ENST00000296214.5	chr1	37959534:37959708:37961485:37961519:37967404:37967597,	37961486	37961519	37961495	37961495	Frame_Shift_Del	T	-	p.K196fs
LIHC	TCGA-DD-A39Y-01	INPP5B	ENST00000373026.1,ENST00000373023.2,ENST00000373027.1,ENST00000373024.3	chr1	38332130:38332215:38334172:38334286:38338601:38338700,	38334173	38334286	38334236	38334236	Frame_Shift_Del	G	-	p.P826fs
LIHC	TCGA-DD-A39Y-01	RHBDL2	ENST00000540558.1	chr1	39381233:39381382:39384638:39385009:39407353:39407456,	39384639	39385009	39384905	39384905	Frame_Shift_Del	C	-	p.E62fs
LIHC	TCGA-DD-A39Y-01	NDUFS5	ENST00000372967.3	chr1	39491989:39492070:39494394:39494612:39500063:39500101,	39494395	39494612	39494501	39494501	Frame_Shift_Del	T	-	p.A35fs
LIHC	TCGA-DD-A39Y-01	MACF1	ENST00000372915.3,ENST00000530262.1,ENST00000539005.1,ENST00000545844.1,ENST00000496804.1,ENST00000317713.7,ENST00000524432.1,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39784124:39784287:39785335:39785419:39788279:39788387,	39785336	39785419	39785385	39785385	Frame_Shift_Del	A	-	p.Q1332fs
LIHC	TCGA-DD-A39Y-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39797017	39797017	Frame_Shift_Del	C	-	p.A1586fs
LIHC	TCGA-DD-A39Y-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798011	39798011	Frame_Shift_Del	A	-	p.L1917fs
LIHC	TCGA-DD-A39Y-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798298	39798298	Frame_Shift_Del	A	-	p.Q2013fs
LIHC	TCGA-DD-A39Y-01	MACF1	ENST00000289893.4,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000564288.1	chr1	39893212:39893286:39893632:39893959:39894913:39894998,	39893633	39893959	39893796	39893796	Frame_Shift_Del	G	-	p.R5547fs
LIHC	TCGA-DD-A39Y-01	MACF1	ENST00000360115.4,ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39920580:39920769:39924041:39924162:39924757:39924921,	39924042	39924162	39924050	39924050	Frame_Shift_Del	G	-	p.M7028fs
LIHC	TCGA-DD-A39Y-01	MACF1	ENST00000360115.4,ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39920580:39920769:39924041:39924162:39924757:39924921,	39924042	39924162	39924108	39924108	Frame_Shift_Del	A	-	p.K7048fs
LIHC	TCGA-DD-A39Y-01	PABPC4	ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000437136.1,ENST00000372862.3	chr1	40027744:40027875:40027994:40028088:40029285:40029401,	40027995	40028088	40028016	40028016	Frame_Shift_Del	G	-	p.Q565fs
LIHC	TCGA-DD-A39Y-01	PABPC4	ENST00000421687.2	chr1	40027744:40027875:40027994:40028052:40029285:40029401,	40027995	40028052	40028016	40028016	Frame_Shift_Del	G	-	p.Q565fs
LIHC	TCGA-DD-A39Y-01	PABPC4	ENST00000421687.2,ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000527718.1,ENST00000525669.1,ENST00000470443.1,ENST00000372862.3	chr1	40030970:40031050:40033422:40033518:40034473:40034528,	40033423	40033518	40033468	40033468	Frame_Shift_Del	T	-	p.K309fs
LIHC	TCGA-DD-A39Y-01	TRIT1	ENST00000462797.1,ENST00000372818.1,ENST00000316891.5,ENST00000469476.2	chr1	40315794:40315933:40318402:40318548:40319641:40319740,	40318403	40318548	40318494	40318494	Frame_Shift_Del	C	-	p.E157fs
LIHC	TCGA-DD-A39Y-01	MFSD2A	ENST00000483824.1	chr1	40420829:40421057:40422758:40422893:40424372:40424497,	40422759	40422893	40422826	40422826	Frame_Shift_Del	C	-	p.A54fs
LIHC	TCGA-DD-A39Y-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535528	40535528	Frame_Shift_Del	G	-	p.E325fs
LIHC	TCGA-DD-A39Y-01	ZMPSTE24	ENST00000372759.3	chr1	40734090:40734207:40735646:40735799:40737565:40737707,	40735647	40735799	40735746	40735746	Frame_Shift_Del	G	-	p.G193fs
LIHC	TCGA-DD-A39Y-01	ZMPSTE24	ENST00000372759.3	chr1	40747036:40747199:40751596:40751701:40756525:40756669,	40751597	40751701	40751681	40751681	Frame_Shift_Del	A	-	p.K347fs
LIHC	TCGA-DD-A39Y-01	COL9A2	ENST00000482722.1,ENST00000372748.3	chr1	40773117:40773171:40773374:40773428:40773863:40773917,	40773375	40773428	40773421	40773421	Frame_Shift_Del	G	-	p.P303fs
LIHC	TCGA-DD-A39Y-01	RIMS3	ENST00000372684.3,ENST00000372683.1	chr1	41098740:41098853:41101587:41101729:41107380:41107628,	41101588	41101729	41101652	41101652	Frame_Shift_Del	C	-	p.V99fs
LIHC	TCGA-DD-A39Y-01	RIMS3	ENST00000372684.3,ENST00000372683.1	chr1	41101587:41101729:41107380:41107628:41113339:41113434,	41107381	41107628	41107585	41107585	Frame_Shift_Del	C	-	p.E5fs
LIHC	TCGA-DD-A39Y-01	NFYC	ENST00000372669.4,ENST00000372654.1,ENST00000467203.1,ENST00000308733.5,ENST00000440226.3,ENST00000425457.2,ENST00000456393.2,ENST00000453631.1,ENST00000372652.1,ENST00000372653.1,ENST00000447388.3,ENST00000372651.1,ENST00000525290.1	chr1	41213205:41213277:41215244:41215358:41223792:41223966,41213209:41213277:41215244:41215358:41218822:41218888,	41215245	41215358	41215291	41215291	Frame_Shift_Del	T	-	p.I75fs
LIHC	TCGA-DD-A39Y-01	KCNQ4	ENST00000347132.5,ENST00000506017.1,ENST00000443478.3,ENST00000509682.2	chr1	41300638:41300770:41303336:41303466:41303982:41304195,	41303337	41303466	41303357	41303357	Frame_Shift_Del	G	-	p.R589fs
LIHC	TCGA-DD-A39Y-01	CTPS1	ENST00000498694.1,ENST00000541520.1,ENST00000463423.1,ENST00000372621.4,ENST00000372616.1	chr1	41474465:41474562:41475116:41475261:41475832:41475926,	41475117	41475261	41475214	41475214	Frame_Shift_Del	G	-	p.V548fs
LIHC	TCGA-DD-A39Y-01	SLFNL1	ENST00000359345.1,ENST00000372611.1,ENST00000302946.8,ENST00000439569.2	chr1	41481268:41481900:41482905:41483049:41483306:41483648,	41482906	41483049	41483023	41483023	Frame_Shift_Del	G	-	p.P328fs
LIHC	TCGA-DD-A39Y-01	SCMH1	ENST00000361191.5	chr1	41582593:41582682:41608549:41608784:41617285:41617356,41582593:41582682:41608549:41608784:41625396:41625605,41582593:41582682:41608549:41608784:41626546:41626567,	41608550	41608784	41608570	41608570	Frame_Shift_Del	C	-	p.G121fs
LIHC	TCGA-DD-A39Y-01	SCMH1	ENST00000361191.5	chr1	41582593:41582682:41608549:41608784:41617285:41617356,41582593:41582682:41608549:41608784:41625396:41625605,41582593:41582682:41608549:41608784:41626546:41626567,	41608550	41608784	41608579	41608579	Frame_Shift_Del	T	-	p.K118fs
LIHC	TCGA-DD-A39Y-01	SCMH1	ENST00000326197.7,ENST00000402904.2,ENST00000397174.2	chr1	41617285:41617356:41618270:41618413:41625396:41625605,	41618271	41618413	41618301	41618301	Frame_Shift_Del	G	-	p.L16fs
LIHC	TCGA-DD-A39Y-01	SCMH1	ENST00000326197.7,ENST00000402904.2,ENST00000397174.2	chr1	41617285:41617356:41618270:41618413:41625396:41625605,	41618271	41618413	41618304	41618304	Frame_Shift_Del	C	-	p.D15fs
LIHC	TCGA-DD-A39Y-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42045419	42045419	Frame_Shift_Del	G	-	p.R1684fs
LIHC	TCGA-DD-A39Y-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42047047	42047047	Frame_Shift_Del	G	-	p.P1142fs
LIHC	TCGA-DD-A39Y-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42047343	42047343	Frame_Shift_Del	T	-	p.K1042fs
LIHC	TCGA-DD-A39Y-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048970	42048970	Frame_Shift_Del	G	-	p.P500fs
LIHC	TCGA-DD-A39Y-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42049097	42049097	Frame_Shift_Del	G	-	p.R458fs
LIHC	TCGA-DD-A39Y-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42049453	42049453	Frame_Shift_Del	G	-	p.P340fs
LIHC	TCGA-DD-A39Y-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42049797	42049797	Frame_Shift_Del	G	-	p.P224fs
LIHC	TCGA-DD-A39Y-01	FOXJ3	ENST00000545068.1,ENST00000372573.1,ENST00000361776.1,ENST00000445886.1,ENST00000372572.1,ENST00000361346.1	chr1	42730785:42730860:42744018:42744343:42776720:42776781,	42744019	42744343	42744078	42744078	Frame_Shift_Del	T	-	p.I104fs
LIHC	TCGA-DD-A39Y-01	ZMYND12	ENST00000461083.1	chr1	42902091:42902214:42905526:42905696:42921558:42921682,	42905527	42905696	42905561	42905561	Frame_Shift_Del	T	-	p.N187fs
LIHC	TCGA-DD-A39Y-01	PPIH	ENST00000304979.3	chr1	43132217:43132258:43133021:43133111:43142254:43142429,	43133022	43133111	43133036	43133036	Frame_Shift_Del	C	-	p.G117fs
LIHC	TCGA-DD-A39Y-01	TIE1	ENST00000538015.1,ENST00000372476.3,ENST00000441333.2	chr1	43772510:43772666:43772812:43772944:43773102:43773243,	43772813	43772944	43772910	43772910	Frame_Shift_Del	C	-	p.C246fs
LIHC	TCGA-DD-A39Y-01	TIE1	ENST00000473014.1	chr1	43779448:43779639:43782869:43783743:43784905:43785019,	43782870	43783743	43783001	43783001	Frame_Shift_Del	G	-	p.E847fs
LIHC	TCGA-DD-A39Y-01	TIE1	ENST00000433781.2,ENST00000372476.3	chr1	43779448:43779639:43782869:43783080:43783234:43783345,	43782870	43783080	43783001	43783001	Frame_Shift_Del	G	-	p.E847fs
LIHC	TCGA-DD-A39Y-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43898187:43898275:43898398:43898470:43898659:43898861,	43898399	43898470	43898420	43898420	Frame_Shift_Del	G	-	p.R1794fs
LIHC	TCGA-DD-A39Y-01	PTPRF	ENST00000372413.3,ENST00000372414.3,ENST00000438120.1,ENST00000359947.4	chr1	44054401:44054671:44056642:44057224:44057482:44057619,	44056643	44057224	44057064	44057064	Frame_Shift_Del	C	-	p.R457fs
LIHC	TCGA-DD-A39Y-01	PTPRF	ENST00000422171.2,ENST00000414879.1	chr1	44058127:44058272:44064390:44064584:44069086:44069198,	44064391	44064584	44064528	44064528	Frame_Shift_Del	A	-	p.N753fs
LIHC	TCGA-DD-A39Y-01	PTPRF	ENST00000412568.2,ENST00000372407.4,ENST00000422171.2,ENST00000414879.1	chr1	44075059:44075169:44078438:44078471:44079288:44079386,	44078439	44078471	44078449	44078449	Frame_Shift_Del	C	-	p.V676fs
LIHC	TCGA-DD-A39Y-01	ARTN	ENST00000472435.1	chr1	44399869:44399932:44401326:44401388:44401740:44401903,	44401327	44401388	44401384	44401384	Frame_Shift_Del	A	-	p.Q20fs
LIHC	TCGA-DD-A39Y-01	ARTN	ENST00000479128.1,ENST00000414809.3,ENST00000491846.1	chr1	44399869:44399932:44401261:44401388:44401740:44401903,	44401262	44401388	44401384	44401384	Frame_Shift_Del	A	-	p.Q20fs
LIHC	TCGA-DD-A39Y-01	DPH2	ENST00000495421.1,ENST00000255108.3	chr1	44436267:44436489:44436637:44436861:44437058:44437198,44436267:44436380:44436637:44436861:44437829:44438006,44436267:44436380:44436637:44436861:44437058:44437086,	44436638	44436861	44436692	44436692	Frame_Shift_Del	T	-	p.H105fs
LIHC	TCGA-DD-A39Y-01	DPH2	ENST00000492306.1	chr1	44436267:44436380:44436577:44436861:44437058:44437086,	44436578	44436861	44436692	44436692	Frame_Shift_Del	T	-	p.H105fs
LIHC	TCGA-DD-A39Y-01	DPH2	ENST00000529729.1	chr1	44436267:44436380:44436637:44436892:44437058:44437129,	44436638	44436892	44436692	44436692	Frame_Shift_Del	T	-	p.H105fs
LIHC	TCGA-DD-A39Y-01	ERI3	ENST00000537474.1,ENST00000372259.5,ENST00000372257.2,ENST00000452396.1	chr1	44713657:44713710:44750506:44750579:44773981:44774073,	44750507	44750579	44750571	44750571	Frame_Shift_Del	C	-	p.G256fs
LIHC	TCGA-DD-A39Y-01	ERI3	ENST00000537474.1,ENST00000495828.1,ENST00000372259.5,ENST00000456170.1,ENST00000372257.2,ENST00000452396.1	chr1	44750506:44750579:44773981:44774073:44778840:44778900,	44773982	44774073	44774014	44774014	Frame_Shift_Del	A	-	p.F242fs
LIHC	TCGA-DD-A39Y-01	ERI3	ENST00000372257.2	chr1	44785299:44785416:44804716:44804994:44820563:44820880,44785299:44785416:44804716:44804994:44818521:44818581,	44804717	44804994	44804868	44804868	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-DD-A39Y-01	ERI3	ENST00000457571.1	chr1	44785299:44785416:44804716:44804988:44818521:44818581,	44804717	44804988	44804868	44804868	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-DD-A39Y-01	KIF2C	ENST00000372222.3,ENST00000372224.4,ENST00000372217.1,ENST00000455186.1	chr1	45216113:45216236:45218803:45218926:45219404:45219505,	45218804	45218926	45218913	45218913	Frame_Shift_Del	C	-	p.N129fs
LIHC	TCGA-DD-A39Y-01	PTCH2	ENST00000372192.3,ENST00000447098.2	chr1	45295580:45295702:45296519:45296715:45297377:45297469,	45296520	45296715	45296551	45296551	Frame_Shift_Del	G	-	p.P262fs
LIHC	TCGA-DD-A39Y-01	EIF2B3	ENST00000372183.3,ENST00000360403.2,ENST00000439363.1	chr1	45345489:45345680:45347283:45347411:45363026:45363116,	45347284	45347411	45347321	45347321	Frame_Shift_Del	T	-	p.K249fs
LIHC	TCGA-DD-A39Y-01	HECTD3	ENST00000372172.4	chr1	45475239:45475355:45475657:45475793:45475872:45475965,	45475658	45475793	45475712	45475712	Frame_Shift_Del	C	-	p.E235fs
LIHC	TCGA-DD-A39Y-01	MUTYH	ENST00000470256.1,ENST00000456914.2,ENST00000372100.5,ENST00000372115.3,ENST00000461495.1,ENST00000372110.3,ENST00000478796.1,ENST00000481571.1,ENST00000450313.1,ENST00000462388.1,ENST00000533178.1,ENST00000354383.6,ENST00000475516.1,ENST00000412971.1,ENST00000448481.1,ENST00000372098.3,ENST00000435155.1,ENST00000528013.2,ENST00000372104.1,ENST00000467940.1,ENST00000355498.2	chr1	45797894:45797982:45798062:45798160:45798245:45798359,	45798063	45798160	45798127	45798127	Frame_Shift_Del	C	-	p.V242fs
LIHC	TCGA-DD-A39Y-01	TESK2	ENST00000538496.1,ENST00000486676.1,ENST00000372086.3	chr1	45809970:45811230:45811548:45811666:45812650:45812734,45809970:45811230:45811548:45811666:45812364:45812451,	45811549	45811666	45811576	45811576	Frame_Shift_Del	C	-	p.D324fs
LIHC	TCGA-DD-A39Y-01	PRDX1	ENST00000319248.8	chr1	45981325:45981479:45984609:45984726:45987500:45987526,	45984610	45984726	45984677	45984677	Frame_Shift_Del	G	-	p.P13fs
LIHC	TCGA-DD-A39Y-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073055	46073055	Frame_Shift_Del	A	-	p.K159fs
LIHC	TCGA-DD-A39Y-01	NASP	ENST00000402363.3,ENST00000372052.4,ENST00000481782.1,ENST00000530073.1,ENST00000531612.1,ENST00000350030.3,ENST00000537798.1,ENST00000351223.3	chr1	46082372:46082375:46083134:46083263:46083732:46083885,	46083135	46083263	46083213	46083213	Frame_Shift_Del	G	-	p.G746fs
LIHC	TCGA-DD-A39Y-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120968	46120968	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-DD-A39Y-01	MAST2	ENST00000372009.2,ENST00000372008.2,ENST00000361297.2,ENST00000477968.1	chr1	46495137:46495239:46495502:46495625:46495800:46495910,	46495503	46495625	46495584	46495584	Frame_Shift_Del	T	-	p.I801fs
LIHC	TCGA-DD-A39Y-01	POMGNT1	ENST00000371992.1,ENST00000371986.3	chr1	46654390:46654652:46654913:46655029:46655129:46655239,46654390:46654652:46654913:46655029:46655155:46655239,	46654914	46655029	46654982	46654982	Frame_Shift_Del	G	-	p.P639fs
LIHC	TCGA-DD-A39Y-01	RAD54L	ENST00000442598.1,ENST00000371975.4,ENST00000493985.1,ENST00000469835.1	chr1	46724357:46724418:46725635:46725771:46726213:46726283,	46725636	46725771	46725705	46725705	Frame_Shift_Del	A	-	p.E114fs
LIHC	TCGA-DD-A39Y-01	RAD54L	ENST00000442598.1,ENST00000371975.4,ENST00000488942.1,ENST00000459678.1	chr1	46739809:46739888:46740209:46740389:46743488:46743652,	46740210	46740389	46740246	46740246	Frame_Shift_Del	G	-	p.G577fs
LIHC	TCGA-DD-A39Y-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46751210	46751210	Frame_Shift_Del	A	-	p.L440fs
LIHC	TCGA-DD-A39Y-01	FAAH	ENST00000243167.8	chr1	46877814:46877923:46878746:46878892:46879118:46879517,	46878747	46878892	46878852	46878852	Frame_Shift_Del	G	-	p.R524fs
LIHC	TCGA-DD-A39Y-01	FAAH	ENST00000484697.1	chr1	46877814:46877923:46878794:46878892:46879118:46879517,	46878795	46878892	46878852	46878852	Frame_Shift_Del	G	-	p.R524fs
LIHC	TCGA-DD-A39Y-01	ATPAF1	ENST00000534216.1,ENST00000576409.1,ENST00000529214.1,ENST00000371937.4,ENST00000532925.1,ENST00000542495.1,ENST00000492233.1	chr1	47101568:47101642:47108865:47108973:47110832:47110928,	47108866	47108973	47108869	47108869	Frame_Shift_Del	A	-	p.F286fs
LIHC	TCGA-DD-A39Y-01	ATPAF1	ENST00000534216.1,ENST00000576409.1,ENST00000529214.1,ENST00000371937.4,ENST00000532925.1,ENST00000542495.1	chr1	47108865:47108973:47110832:47110928:47118252:47118300,	47110833	47110928	47110887	47110887	Frame_Shift_Del	A	-	p.F233fs
LIHC	TCGA-DD-A39Y-01	CYP4B1	ENST00000371923.4,ENST00000371919.4,ENST00000526297.1,ENST00000452782.2	chr1	47278167:47278295:47279153:47279278:47279653:47279735,47278167:47278295:47279153:47279278:47279583:47279735,47278167:47278295:47279153:47279278:47279580:47279660,	47279154	47279278	47279190	47279190	Frame_Shift_Del	T	-	p.F178fs
LIHC	TCGA-DD-A39Y-01	CYP4A11	ENST00000371905.1,ENST00000310638.4	chr1	47400124:47400231:47400671:47400826:47401194:47401319,	47400672	47400826	47400774	47400774	Frame_Shift_Del	A	-	p.S230fs
LIHC	TCGA-DD-A39Y-01	CYP4A22	ENST00000485117.1,ENST00000294337.3,ENST00000371891.3	chr1	47608940:47609065:47609433:47609588:47610028:47610135,	47609434	47609588	47609481	47609481	Frame_Shift_Del	T	-	p.V228fs
LIHC	TCGA-DD-A39Y-01	PDZK1IP1	ENST00000294338.2,ENST00000371885.1	chr1	47650673:47650769:47652990:47653099:47655537:47655603,	47652991	47653099	47653046	47653046	Frame_Shift_Del	G	-	p.L41fs
LIHC	TCGA-DD-A39Y-01	SPATA6	ENST00000490850.1,ENST00000396199.3,ENST00000603831.1,ENST00000371847.3	chr1	48771476:48771550:48821341:48821441:48825257:48825394,	48821342	48821441	48821382	48821382	Frame_Shift_Del	T	-	p.N385fs
LIHC	TCGA-DD-A39Y-01	TTC39A	ENST00000534098.1	chr1	51756185:51756297:51760062:51760183:51763462:51763632,	51760063	51760183	51760172	51760172	Frame_Shift_Del	C	-	p.G422fs
LIHC	TCGA-DD-A39Y-01	TTC39A	ENST00000371750.5,ENST00000422925.1,ENST00000413473.2,ENST00000262676.5,ENST00000371747.3,ENST00000262675.7,ENST00000447632.2,ENST00000411642.2,ENST00000439482.1,ENST00000451380.1	chr1	51770752:51770818:51771648:51771748:51774932:51774997,	51771649	51771748	51771660	51771660	Frame_Shift_Del	C	-	p.A225fs
LIHC	TCGA-DD-A39Y-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000486505.1,ENST00000371730.2	chr1	51864703:51864837:51866589:51866625:51868106:51868197,	51866590	51866625	51866593	51866593	Frame_Shift_Del	T	-	p.I639fs
LIHC	TCGA-DD-A39Y-01	OSBPL9	ENST00000435274.2	chr1	52117662:52117713:52135105:52135486:52179674:52179751,	52135106	52135486	52135166	52135166	Frame_Shift_Del	A	-	p.K93fs
LIHC	TCGA-DD-A39Y-01	OSBPL9	ENST00000453295.1	chr1	52117662:52117713:52135105:52135184:52179674:52179751,52082785:52082893:52135105:52135184:52179674:52179751,	52135106	52135184	52135166	52135166	Frame_Shift_Del	A	-	p.K93fs
LIHC	TCGA-DD-A39Y-01	RAB3B	ENST00000371655.3	chr1	52398989:52399114:52402965:52403084:52442561:52442789,	52402966	52403084	52403009	52403009	Frame_Shift_Del	A	-	p.Y102fs
LIHC	TCGA-DD-A39Y-01	BTF3L4	ENST00000472944.2	chr1	52522003:52522051:52530496:52530610:52549011:52549172,	52530497	52530610	52530551	52530551	Frame_Shift_Del	A	-	p.K38fs
LIHC	TCGA-DD-A39Y-01	ZYG11B	ENST00000545132.1,ENST00000443756.2,ENST00000294353.6	chr1	53222129:53222295:53236691:53237446:53245524:53245665,	53236692	53237446	53236725	53236725	Frame_Shift_Del	G	-	p.R77fs
LIHC	TCGA-DD-A39Y-01	ECHDC2	ENST00000479183.2	chr1	53362219:53362269:53363108:53364896:53370317:53370505,	53363109	53364896	53364891	53364891	Frame_Shift_Del	G	-	p.P190fs
LIHC	TCGA-DD-A39Y-01	ECHDC2	ENST00000543419.1	chr1	53363108:53363156:53364845:53364896:53373539:53373626,53362219:53362269:53364845:53364896:53370317:53370505,53363108:53363156:53364845:53364896:53370317:53370505,53363108:53363156:53364845:53364896:53377237:53377325,	53364846	53364896	53364891	53364891	Frame_Shift_Del	G	-	p.P190fs
LIHC	TCGA-DD-A39Y-01	ECHDC2	ENST00000487866.1,ENST00000486170.2,ENST00000536120.1,ENST00000479593.1,ENST00000476477.2,ENST00000371522.4	chr1	53370460:53370505:53370705:53370762:53373539:53373626,53370460:53370505:53370705:53370762:53372190:53372283,	53370706	53370762	53370714	53370714	Frame_Shift_Del	G	-	p.P123fs
LIHC	TCGA-DD-A39Y-01	ECHDC2	ENST00000460612.1	chr1	53370460:53370505:53370705:53372283:53373539:53373626,	53370706	53372283	53370714	53370714	Frame_Shift_Del	G	-	p.P123fs
LIHC	TCGA-DD-A39Y-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2,ENST00000473584.1,ENST00000371513.5	chr1	53440440:53440504:53442354:53442441:53443888:53444039,	53442355	53442441	53442411	53442411	Frame_Shift_Del	T	-	p.V215fs
LIHC	TCGA-DD-A39Y-01	LRP8	ENST00000347547.2,ENST00000480045.1,ENST00000459674.1,ENST00000371454.2,ENST00000465675.1,ENST00000306052.6,ENST00000354412.3	chr1	53728117:53728236:53729840:53730068:53732144:53732261,	53729841	53730068	53729848	53729848	Frame_Shift_Del	G	-	p.L550fs
LIHC	TCGA-DD-A39Y-01	YIPF1	ENST00000371399.1,ENST00000072644.1	chr1	54317406:54317943:54325728:54325826:54331872:54332055,	54325729	54325826	54325815	54325815	Frame_Shift_Del	A	-	p.F281fs
LIHC	TCGA-DD-A39Y-01	YIPF1	ENST00000371399.1,ENST00000469457.1,ENST00000072644.1,ENST00000465897.1,ENST00000480151.1,ENST00000464950.2,ENST00000412288.1,ENST00000539954.1	chr1	54337044:54337161:54343987:54344075:54344314:54344395,	54343988	54344075	54344029	54344029	Frame_Shift_Del	T	-	p.N108fs
LIHC	TCGA-DD-A39Y-01	LRRC42	ENST00000319223.4,ENST00000371370.3,ENST00000444987.1	chr1	54418011:54418145:54423821:54423953:54426028:54426141,	54423822	54423953	54423839	54423839	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-DD-A39Y-01	LRRC42	ENST00000319223.4,ENST00000371370.3	chr1	54426028:54426147:54427706:54427795:54427968:54428082,	54427707	54427795	54427711	54427711	Frame_Shift_Del	C	-	p.N243fs
LIHC	TCGA-DD-A39Y-01	CYB5RL	ENST00000528287.1	chr1	54653324:54653412:54656410:54656569:54661091:54661388,	54656411	54656569	54656561	54656561	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-DD-A39Y-01	CYB5RL	ENST00000537208.1,ENST00000419823.2,ENST00000287899.8,ENST00000534324.1,ENST00000542737.1	chr1	54653324:54653412:54656420:54656569:54661091:54661388,	54656421	54656569	54656561	54656561	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-DD-A39Y-01	MRPL37	ENST00000360840.5,ENST00000605337.1	chr1	54670967:54671083:54675618:54675804:54678173:54678331,	54675619	54675804	54675792	54675792	Frame_Shift_Del	A	-	p.K274fs
LIHC	TCGA-DD-A39Y-01	MRPL37	ENST00000360840.5,ENST00000605337.1,ENST00000336230.6,ENST00000398219.2	chr1	54675620:54675804:54678173:54678331:54681813:54682017,	54678174	54678331	54678292	54678292	Frame_Shift_Del	T	-	p.A317fs
LIHC	TCGA-DD-A39Y-01	ACOT11	ENST00000371316.3,ENST00000343744.2,ENST00000481208.1	chr1	55070748:55070882:55072806:55072938:55073614:55073741,	55072807	55072938	55072889	55072889	Frame_Shift_Del	C	-	p.P485fs
LIHC	TCGA-DD-A39Y-01	TTC22	ENST00000371274.4	chr1	55253383:55253499:55253714:55253770:55266269:55266871,	55253715	55253770	55253766	55253766	Frame_Shift_Del	G	-	p.P191fs
LIHC	TCGA-DD-A39Y-01	DHCR24	ENST00000371269.3,ENST00000535035.1	chr1	55330975:55331119:55337022:55337286:55340765:55340884,	55337023	55337286	55337097	55337097	Frame_Shift_Del	C	-	p.E268fs
LIHC	TCGA-DD-A39Y-01	PCSK9	ENST00000543384.1,ENST00000302118.5	chr1	55524171:55524320:55525158:55525336:55527047:55527229,	55525159	55525336	55525320	55525320	Frame_Shift_Del	G	-	p.Q555fs
LIHC	TCGA-DD-A39Y-01	DAB1	ENST00000414851.2	chr1	57491653:57491716:57499195:57499246:57528556:57528616,	57499196	57499246	57499223	57499223	Frame_Shift_Del	A	-	p.F214fs
LIHC	TCGA-DD-A39Y-01	FGGY	ENST00000493891.1	chr1	60125890:60125965:60132954:60133075:60223602:60223664,	60132955	60133075	60133046	60133046	Frame_Shift_Del	T	-	p.L487fs
LIHC	TCGA-DD-A39Y-01	CYP2J2	ENST00000371204.3	chr1	60366636:60366775:60370542:60370730:60373457:60373592,	60370543	60370730	60370660	60370660	Frame_Shift_Del	G	-	p.S358fs
LIHC	TCGA-DD-A39Y-01	CYP2J2	ENST00000371204.3	chr1	60366636:60366775:60370542:60370730:60373457:60373592,	60370543	60370730	60370695	60370695	Frame_Shift_Del	G	-	p.Q347fs
LIHC	TCGA-DD-A39Y-01	NFIA	ENST00000407417.3,ENST00000485903.2,ENST00000479364.1,ENST00000371189.4,ENST00000371187.3,ENST00000371191.1,ENST00000403491.3	chr1	61743191:61743257:61798183:61798258:61818121:61818239,	61798184	61798258	61798223	61798223	Frame_Shift_Del	T	-	p.V222fs
LIHC	TCGA-DD-A39Y-01	TM2D1	ENST00000371180.2,ENST00000488206.1,ENST00000606498.1,ENST00000294613.5	chr1	62146916:62147022:62149088:62149218:62160368:62160442,	62149089	62149218	62149125	62149125	Frame_Shift_Del	T	-	p.T203fs
LIHC	TCGA-DD-A39Y-01	TM2D1	ENST00000496465.1,ENST00000371177.2,ENST00000371180.2,ENST00000371178.1,ENST00000488206.1,ENST00000468586.1,ENST00000606498.1,ENST00000294613.5	chr1	62166605:62166697:62175000:62175109:62189384:62189444,	62175001	62175109	62175025	62175025	Frame_Shift_Del	A	-	p.F108fs
LIHC	TCGA-DD-A39Y-01	KANK4	ENST00000317477.4,ENST00000371150.1,ENST00000354381.3,ENST00000371153.4	chr1	62703215:62704053:62713143:62713344:62718738:62718809,	62713144	62713344	62713189	62713189	Frame_Shift_Del	C	-	p.R946fs
LIHC	TCGA-DD-A39Y-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62739133	62739133	Frame_Shift_Del	G	-	p.P548fs
LIHC	TCGA-DD-A39Y-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62739223	62739223	Frame_Shift_Del	C	-	p.G518fs
LIHC	TCGA-DD-A39Y-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62739438	62739438	Frame_Shift_Del	C	-	p.G446fs
LIHC	TCGA-DD-A39Y-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910757	62910757	Frame_Shift_Del	A	-	p.S302fs
LIHC	TCGA-DD-A39Y-01	DOCK7	ENST00000251157.5,ENST00000454575.1	chr1	63009326:63009416:63010617:63010710:63018402:63018572,	63010618	63010710	63010658	63010658	Frame_Shift_Del	G	-	p.P940fs
LIHC	TCGA-DD-A39Y-01	DOCK7	ENST00000340370.5,ENST00000251157.5	chr1	63042932:63043034:63044498:63044637:63048854:63048925,	63044499	63044637	63044558	63044558	Frame_Shift_Del	A	-	p.Y651fs
LIHC	TCGA-DD-A39Y-01	ANGPTL3	ENST00000371129.3	chr1	63067990:63068051:63069639:63069906:63070303:63071830,	63069640	63069906	63069752	63069752	Frame_Shift_Del	T	-	p.S348fs
LIHC	TCGA-DD-A39Y-01	ANGPTL3	ENST00000371129.3	chr1	63067990:63068051:63069639:63069906:63070303:63071830,	63069640	63069906	63069849	63069849	Frame_Shift_Del	T	-	p.F381fs
LIHC	TCGA-DD-A39Y-01	ATG4C	ENST00000317868.4,ENST00000371120.3,ENST00000443289.1,ENST00000371118.1	chr1	63270842:63270926:63282245:63282479:63284675:63284736,	63282246	63282479	63282254	63282254	Frame_Shift_Del	A	-	p.K57fs
LIHC	TCGA-DD-A39Y-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63300446:63300523:63307098:63307218:63329662:63331184,	63307099	63307218	63307165	63307165	Frame_Shift_Del	T	-	p.F386fs
LIHC	TCGA-DD-A39Y-01	ALG6	ENST00000603108.1,ENST00000371108.4,ENST00000263440.4	chr1	63862183:63862268:63867924:63868014:63870123:63870212,	63867925	63868014	63867973	63867973	Frame_Shift_Del	C	-	p.Y72fs
LIHC	TCGA-DD-A39Y-01	ALG6	ENST00000603108.1,ENST00000462390.1,ENST00000371108.4,ENST00000263440.4,ENST00000465969.1	chr1	63885064:63885111:63894403:63894472:63894598:63894797,	63894404	63894472	63894446	63894446	Frame_Shift_Del	T	-	p.T367fs
LIHC	TCGA-DD-A39Y-01	ALG6	ENST00000603108.1,ENST00000462390.1,ENST00000371108.4,ENST00000263440.4,ENST00000465969.1	chr1	63885064:63885111:63894403:63894472:63894598:63894797,	63894404	63894472	63894450	63894450	Frame_Shift_Del	T	-	p.F369fs
LIHC	TCGA-DD-A39Y-01	CACHD1	ENST00000495994.1	chr1	65068488:65068595:65095037:65095164:65099726:65099943,	65095038	65095164	65095104	65095104	Frame_Shift_Del	T	-	p.I195fs
LIHC	TCGA-DD-A39Y-01	CACHD1	ENST00000495994.1,ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65130180:65130362:65131739:65131850:65137246:65137369,	65131740	65131850	65131746	65131746	Frame_Shift_Del	C	-	p.L761fs
LIHC	TCGA-DD-A39Y-01	RAVER2	ENST00000418058.1	chr1	65270455:65270521:65270673:65270788:65278420:65278532,	65270674	65270788	65270749	65270749	Frame_Shift_Del	A	-	p.K459fs
LIHC	TCGA-DD-A39Y-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147585	67147585	Frame_Shift_Del	A	-	p.E283fs
LIHC	TCGA-DD-A39Y-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147794	67147794	Frame_Shift_Del	G	-	p.G353fs
LIHC	TCGA-DD-A39Y-01	SGIP1	ENST00000371037.4,ENST00000371035.3,ENST00000237247.6	chr1	67155872:67155999:67161116:67161176:67184976:67185088,	67161117	67161176	67161158	67161158	Frame_Shift_Del	T	-	p.F538fs
LIHC	TCGA-DD-A39Y-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67306151:67306354:67313166:67313361:67327829:67327985,	67313167	67313361	67313328	67313328	Frame_Shift_Del	T	-	p.N377fs
LIHC	TCGA-DD-A39Y-01	WDR78	ENST00000531980.1	chr1	67327955:67327985:67337052:67337192:67356836:67356949,	67337053	67337192	67337090	67337090	Frame_Shift_Del	T	-	p.K301fs
LIHC	TCGA-DD-A39Y-01	WDR78	ENST00000431318.1,ENST00000371022.3,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67356836:67356949:67358911:67359096:67370883:67370986,	67358912	67359096	67358939	67358939	Frame_Shift_Del	T	-	p.N168fs
LIHC	TCGA-DD-A39Y-01	MIER1	ENST00000355356.3,ENST00000401041.1,ENST00000401042.3,ENST00000371018.3,ENST00000357692.2,ENST00000371016.1,ENST00000355977.6,ENST00000371014.1	chr1	67428770:67428843:67436490:67436642:67437337:67437419,	67436491	67436642	67436627	67436627	Frame_Shift_Del	A	-	p.I267fs
LIHC	TCGA-DD-A39Y-01	C1orf141	ENST00000371007.2,ENST00000544837.1,ENST00000371006.1	chr1	67561978:67562004:67581034:67581147:67591434:67591592,	67581035	67581147	67581102	67581102	Frame_Shift_Del	A	-	p.F93fs
LIHC	TCGA-DD-A39Y-01	IL12RB2	ENST00000371000.1,ENST00000544434.1	chr1	67773636:67773650:67786015:67786127:67787284:67787572,	67786016	67786127	67786063	67786063	Frame_Shift_Del	T	-	p.T4fs
LIHC	TCGA-DD-A39Y-01	DEPDC1	ENST00000456315.2	chr1	68947122:68947295:68947728:68948580:68949632:68949773,	68947729	68948580	68948121	68948121	Frame_Shift_Del	A	-	p.L457fs
LIHC	TCGA-DD-A39Y-01	ANKRD13C	ENST00000370944.4,ENST00000262346.6	chr1	70742447:70742527:70758070:70758232:70761812:70761944,	70758071	70758232	70758180	70758180	Frame_Shift_Del	A	-	p.L369fs
LIHC	TCGA-DD-A39Y-01	ANKRD13C	ENST00000370944.4,ENST00000262346.6,ENST00000490846.1	chr1	70758070:70758232:70761812:70761944:70766446:70766591,	70761813	70761944	70761828	70761828	Frame_Shift_Del	A	-	p.F346fs
LIHC	TCGA-DD-A39Y-01	ANKRD13C	ENST00000498735.1	chr1	70771906:70771973:70781163:70781249:70790535:70790640,	70781164	70781249	70781183	70781183	Frame_Shift_Del	A	-	p.L216fs
LIHC	TCGA-DD-A39Y-01	ANKRD13C	ENST00000498735.1	chr1	70771906:70771973:70781163:70781249:70790535:70790640,	70781164	70781249	70781194	70781194	Frame_Shift_Del	T	-	p.K211fs
LIHC	TCGA-DD-A39Y-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507112	74507112	Frame_Shift_Del	T	-	p.K501fs
LIHC	TCGA-DD-A39Y-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507427	74507427	Frame_Shift_Del	T	-	p.K396fs
LIHC	TCGA-DD-A39Y-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507427	74507427	Frame_Shift_Del	T	-	p.K396fs
LIHC	TCGA-DD-A39Y-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74507374:74507617:74540344:74540474:74575077:74575237,	74540345	74540474	74540391	74540391	Frame_Shift_Del	T	-	p.K317fs
LIHC	TCGA-DD-A39Y-01	CRYZ	ENST00000370871.3,ENST00000441120.1,ENST00000417775.1,ENST00000340866.5,ENST00000370870.1	chr1	75180262:75180314:75184892:75185056:75188801:75188942,	75184893	75185056	75184937	75184937	Frame_Shift_Del	G	-	p.A128fs
LIHC	TCGA-DD-A39Y-01	TYW3	ENST00000483990.1,ENST00000479111.1,ENST00000370867.3	chr1	75202225:75202306:75204373:75204472:75214434:75214506,	75204374	75204472	75204425	75204425	Frame_Shift_Del	T	-	p.F103fs
LIHC	TCGA-DD-A39Y-01	ACADM	ENST00000526129.1,ENST00000541113.1,ENST00000370834.5,ENST00000420607.2,ENST00000532509.1,ENST00000526196.1,ENST00000370841.4	chr1	76198537:76198607:76200475:76200556:76205664:76205795,76199212:76199313:76200475:76200556:76205664:76205795,	76200476	76200556	76200510	76200510	Frame_Shift_Del	A	-	p.Q141fs
LIHC	TCGA-DD-A39Y-01	RABGGTB	ENST00000471759.1,ENST00000319942.3,ENST00000462042.1,ENST00000473406.1,ENST00000535300.1,ENST00000470201.1,ENST00000370826.3,ENST00000491266.1	chr1	76253181:76253289:76254843:76255041:76255636:76255959,	76254844	76255041	76254887	76254887	Frame_Shift_Del	G	-	p.W52fs
LIHC	TCGA-DD-A39Y-01	ST6GALNAC5	ENST00000477717.1	chr1	77461141:77461205:77509888:77510298:77515942:77516001,77334181:77334427:77509888:77510298:77515942:77516001,	77509889	77510298	77509895	77509895	Frame_Shift_Del	A	-	p.K90fs
LIHC	TCGA-DD-A39Y-01	AK5	ENST00000317704.4	chr1	77752627:77752812:77759549:77759645:77763243:77763375,	77759550	77759645	77759626	77759626	Frame_Shift_Del	A	-	p.P106fs
LIHC	TCGA-DD-A39Y-01	AK5	ENST00000344720.5,ENST00000478407.1,ENST00000354567.2	chr1	77752627:77752812:77759477:77759645:77763243:77763375,	77759478	77759645	77759626	77759626	Frame_Shift_Del	A	-	p.P106fs
LIHC	TCGA-DD-A39Y-01	AK5	ENST00000344720.5,ENST00000354567.2	chr1	77987511:77987628:78001531:78001723:78024286:78024414,	78001532	78001723	78001705	78001705	Frame_Shift_Del	A	-	p.T508fs
LIHC	TCGA-DD-A39Y-01	USP33	ENST00000370793.1,ENST00000370794.3,ENST00000357428.1	chr1	78163547:78163616:78167053:78167156:78177431:78177540,	78167054	78167156	78167114	78167114	Frame_Shift_Del	A	-	p.Y848fs
LIHC	TCGA-DD-A39Y-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401649	78401649	Frame_Shift_Del	A	-	p.K402fs
LIHC	TCGA-DD-A39Y-01	GIPC2	ENST00000370759.3	chr1	78511585:78512018:78546358:78546544:78560635:78560816,	78546359	78546544	78546535	78546535	Frame_Shift_Del	T	-	p.A139fs
LIHC	TCGA-DD-A39Y-01	GIPC2	ENST00000370759.3	chr1	78546358:78546544:78560635:78560816:78585076:78585183,	78560636	78560816	78560764	78560764	Frame_Shift_Del	A	-	p.L185fs
LIHC	TCGA-DD-A39Y-01	IFI44L	ENST00000370751.5	chr1	79086153:79086256:79093590:79094078:79094635:79094684,	79093591	79094078	79093635	79093635	Frame_Shift_Del	A	-	p.E12fs
LIHC	TCGA-DD-A39Y-01	IFI44L	ENST00000370751.5	chr1	79086153:79086256:79093590:79094078:79094635:79094684,	79093591	79094078	79093649	79093649	Frame_Shift_Del	A	-	p.K17fs
LIHC	TCGA-DD-A39Y-01	IFI44	ENST00000370747.4,ENST00000438486.1,ENST00000545124.1,ENST00000470323.1,ENST00000472152.1,ENST00000495254.1	chr1	79119927:79119964:79120698:79120894:79121046:79121196,	79120699	79120894	79120808	79120808	Frame_Shift_Del	T	-	p.F203fs
LIHC	TCGA-DD-A39Y-01	TTLL7	ENST00000477524.1,ENST00000480174.1,ENST00000488014.1,ENST00000260505.8	chr1	84414310:84414378:84415547:84415669:84417527:84417610,	84415548	84415669	84415555	84415555	Frame_Shift_Del	T	-	p.N91fs
LIHC	TCGA-DD-A39Y-01	PRKACB	ENST00000470673.1,ENST00000432111.1,ENST00000394838.2,ENST00000446538.1,ENST00000370685.3,ENST00000370680.1,ENST00000370689.2,ENST00000450730.1,ENST00000370684.1,ENST00000370688.3,ENST00000413538.1,ENST00000417530.1,ENST00000436133.1,ENST00000370682.3	chr1	84647882:84648011:84649719:84649818:84650782:84650865,	84649720	84649818	84649759	84649759	Frame_Shift_Del	A	-	p.K93fs
LIHC	TCGA-DD-A39Y-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4	chr1	85124000:85124151:85127880:85128058:85128137:85128213,	85127881	85128058	85127987	85127987	Frame_Shift_Del	T	-	p.N247fs
LIHC	TCGA-DD-A39Y-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4,ENST00000460500.1	chr1	85128137:85128213:85130099:85130235:85131804:85131915,	85130100	85130235	85130227	85130227	Frame_Shift_Del	T	-	p.K155fs
LIHC	TCGA-DD-A39Y-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331330	85331330	Frame_Shift_Del	A	-	p.F158fs
LIHC	TCGA-DD-A39Y-01	WDR63	ENST00000294664.6,ENST00000464801.1,ENST00000370596.1,ENST00000326813.8	chr1	85594390:85594482:85595672:85595795:85598537:85598710,	85595673	85595795	85595787	85595787	Frame_Shift_Del	A	-	p.K843fs
LIHC	TCGA-DD-A39Y-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85647794	85647794	Frame_Shift_Del	T	-	p.K844fs
LIHC	TCGA-DD-A39Y-01	CYR61	ENST00000451137.2	chr1	86047047:86047261:86047610:86047967:86048098:86048307,	86047611	86047967	86047656	86047656	Frame_Shift_Del	A	-	p.Q108fs
LIHC	TCGA-DD-A39Y-01	ODF2L	ENST00000370566.3,ENST00000370567.1,ENST00000488879.2,ENST00000486557.1,ENST00000524695.1,ENST00000460698.2,ENST00000394731.1,ENST00000496592.1,ENST00000294678.2,ENST00000479890.1	chr1	86826114:86826219:86836700:86836836:86838113:86838223,	86836701	86836836	86836819	86836819	Frame_Shift_Del	A	-	p.L313fs
LIHC	TCGA-DD-A39Y-01	ODF2L	ENST00000394733.2	chr1	86850358:86850484:86851140:86851273:86852597:86852762,86850358:86850484:86851140:86851273:86861715:86861936,	86851141	86851273	86851147	86851147	Frame_Shift_Del	A	-	p.F80fs
LIHC	TCGA-DD-A39Y-01	CLCA2	ENST00000370565.4	chr1	86909469:86909694:86913190:86913461:86916245:86916282,	86913191	86913461	86913371	86913371	Frame_Shift_Del	T	-	p.F632fs
LIHC	TCGA-DD-A39Y-01	CLCA4	ENST00000370563.3	chr1	87029343:87029452:87030956:87031134:87031484:87031703,	87030957	87031134	87031097	87031097	Frame_Shift_Del	A	-	p.E233fs
LIHC	TCGA-DD-A39Y-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206717	89206717	Frame_Shift_Del	A	-	p.Q32fs
LIHC	TCGA-DD-A39Y-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206893	89206893	Frame_Shift_Del	A	-	p.K92fs
LIHC	TCGA-DD-A39Y-01	PKN2	ENST00000316005.7,ENST00000370513.5,ENST00000370505.3,ENST00000370521.3	chr1	89225904:89226059:89236034:89236152:89237103:89237249,	89236035	89236152	89236085	89236085	Frame_Shift_Del	A	-	p.T185fs
LIHC	TCGA-DD-A39Y-01	PKN2	ENST00000370513.5,ENST00000370505.3,ENST00000370521.3,ENST00000544045.1	chr1	89273366:89273458:89279239:89279416:89287623:89287686,	89279240	89279416	89279305	89279305	Frame_Shift_Del	T	-	p.L723fs
LIHC	TCGA-DD-A39Y-01	PKN2	ENST00000370513.5,ENST00000370505.3,ENST00000370521.3,ENST00000544045.1	chr1	89294163:89294306:89298426:89298534:89298759:89298840,	89298427	89298534	89298458	89298458	Frame_Shift_Del	T	-	p.V865fs
LIHC	TCGA-DD-A39Y-01	GBP6	ENST00000370456.4	chr1	89834097:89834300:89835104:89835232:89843661:89843771,	89835105	89835232	89835228	89835228	Frame_Shift_Del	A	-	p.E105fs
LIHC	TCGA-DD-A39Y-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90049953	90049953	Frame_Shift_Del	A	-	p.K583fs
LIHC	TCGA-DD-A39Y-01	ZNF326	ENST00000340281.4	chr1	90470691:90470803:90472903:90473309:90475646:90475845,	90472904	90473309	90473089	90473089	Frame_Shift_Del	G	-	p.W132fs
LIHC	TCGA-DD-A39Y-01	ZNF326	ENST00000340281.4	chr1	90470691:90470803:90472903:90473309:90475646:90475845,	90472904	90473309	90473111	90473111	Frame_Shift_Del	A	-	p.S139fs
LIHC	TCGA-DD-A39Y-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478763	90478763	Frame_Shift_Del	A	-	p.E298fs
LIHC	TCGA-DD-A39Y-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90486350:90486481:90487808:90487904:90492912:90493375,	90487809	90487904	90487858	90487858	Frame_Shift_Del	T	-	p.I452fs
LIHC	TCGA-DD-A39Y-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405028	91405028	Frame_Shift_Del	T	-	p.N628fs
LIHC	TCGA-DD-A39Y-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405109	91405109	Frame_Shift_Del	A	-	p.L601fs
LIHC	TCGA-DD-A39Y-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405540	91405540	Frame_Shift_Del	A	-	p.F457fs
LIHC	TCGA-DD-A39Y-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406332	91406332	Frame_Shift_Del	T	-	p.K193fs
LIHC	TCGA-DD-A39Y-01	HFM1	ENST00000430465.1	chr1	91781947:91782033:91784849:91784947:91788506:91788554,	91784850	91784947	91784876	91784876	Frame_Shift_Del	A	-	p.F885fs
LIHC	TCGA-DD-A39Y-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967288	91967288	Frame_Shift_Del	G	-	p.L5fs
LIHC	TCGA-DD-A39Y-01	BRDT	ENST00000427104.1	chr1	92415861:92416031:92428274:92428503:92430183:92430279,	92428275	92428503	92428381	92428381	Frame_Shift_Del	A	-	p.K24fs
LIHC	TCGA-DD-A39Y-01	BRDT	ENST00000427104.1	chr1	92415861:92416031:92428274:92428503:92430183:92430279,	92428275	92428503	92428418	92428418	Frame_Shift_Del	A	-	p.Q36fs
LIHC	TCGA-DD-A39Y-01	BRDT	ENST00000402388.1,ENST00000426141.1,ENST00000423434.1,ENST00000399546.2,ENST00000552654.1,ENST00000427104.1,ENST00000448194.1,ENST00000440509.1,ENST00000362005.3	chr1	92415861:92416031:92430183:92430321:92433702:92433781,92428363:92428503:92430183:92430321:92433702:92433781,	92430184	92430321	92430201	92430201	Frame_Shift_Del	A	-	p.I70fs
LIHC	TCGA-DD-A39Y-01	BTBD8	ENST00000342818.3,ENST00000540648.1,ENST00000370382.3	chr1	92568029:92568226:92573440:92573558:92595243:92595333,	92573441	92573558	92573525	92573525	Frame_Shift_Del	T	-	p.I210fs
LIHC	TCGA-DD-A39Y-01	RPAP2	ENST00000610020.1	chr1	92786155:92786191:92789001:92789932:92798947:92799030,	92789002	92789932	92789045	92789045	Frame_Shift_Del	A	-	p.K190fs
LIHC	TCGA-DD-A39Y-01	TMED5	ENST00000479918.1,ENST00000370280.1	chr1	93621856:93622040:93625685:93625783:93645610:93645818,	93625686	93625783	93625715	93625715	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-DD-A39Y-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93672667:93672955:93676358:93676483:93677657:93677818,	93676359	93676483	93676361	93676361	Frame_Shift_Del	A	-	p.L404fs
LIHC	TCGA-DD-A39Y-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93712394:93712511:93720027:93720171:93721891:93722095,	93720028	93720171	93720124	93720124	Frame_Shift_Del	A	-	p.K1099fs
LIHC	TCGA-DD-A39Y-01	BCAR3	ENST00000260502.6,ENST00000370244.1,ENST00000539242.1,ENST00000370243.1,ENST00000370247.3	chr1	94033296:94033408:94037226:94037398:94041570:94041686,	94037227	94037398	94037274	94037274	Frame_Shift_Del	C	-	p.D643fs
LIHC	TCGA-DD-A39Y-01	BCAR3	ENST00000260502.6,ENST00000370244.1,ENST00000539242.1,ENST00000370243.1,ENST00000370247.3	chr1	94037226:94037398:94041570:94041686:94047857:94048510,	94041571	94041686	94041638	94041638	Frame_Shift_Del	C	-	p.V579fs
LIHC	TCGA-DD-A39Y-01	BCAR3	ENST00000260502.6,ENST00000370244.1,ENST00000370243.1	chr1	94054639:94054976:94057821:94057950:94107859:94107899,	94057822	94057950	94057827	94057827	Frame_Shift_Del	G	-	p.R161fs
LIHC	TCGA-DD-A39Y-01	BCAR3	ENST00000370244.1	chr1	94107859:94107899:94140169:94140497:94147153:94147385,94107859:94107899:94140169:94140497:94171647:94171698,	94140170	94140497	94140264	94140264	Frame_Shift_Del	G	-	p.H75fs
LIHC	TCGA-DD-A39Y-01	ARHGAP29	ENST00000552844.1,ENST00000260526.6	chr1	94654771:94654908:94655481:94655639:94667275:94667413,	94655482	94655639	94655490	94655490	Frame_Shift_Del	T	-	p.K477fs
LIHC	TCGA-DD-A39Y-01	ABCD3	ENST00000536817.1,ENST00000484213.1,ENST00000370214.4,ENST00000454898.2,ENST00000394233.2	chr1	94972093:94972198:94980701:94980758:94982607:94982667,	94980702	94980758	94980735	94980735	Frame_Shift_Del	A	-	p.K627fs
LIHC	TCGA-DD-A39Y-01	SLC44A3	ENST00000530397.1,ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95307555:95307680:95310833:95311020:95322890:95323056,	95310834	95311020	95310970	95310970	Frame_Shift_Del	T	-	p.I341fs
LIHC	TCGA-DD-A39Y-01	DPYD	ENST00000370192.3	chr1	97543298:97544702:97547885:97548026:97564044:97564188,	97547886	97548026	97548012	97548012	Frame_Shift_Del	T	-	p.K927fs
LIHC	TCGA-DD-A39Y-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100327812:100327979:100329941:100330145:100335955:100336137,	100329942	100330145	100330034	100330034	Frame_Shift_Del	T	-	p.F185fs
LIHC	TCGA-DD-A39Y-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100335955:100336137:100336313:100336425:100340242:100340366,	100336314	100336425	100336342	100336342	Frame_Shift_Del	T	-	p.I292fs
LIHC	TCGA-DD-A39Y-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100357987:100358163:100361841:100361944:100366191:100366417,	100361842	100361944	100361852	100361852	Frame_Shift_Del	T	-	p.H1090fs
LIHC	TCGA-DD-A39Y-01	SLC35A3	ENST00000370153.1,ENST00000533028.1,ENST00000427993.2,ENST00000370156.3,ENST00000465289.1,ENST00000370155.3,ENST00000422078.1	chr1	100464816:100464971:100472589:100472712:100476920:100477089,	100472590	100472712	100472647	100472647	Frame_Shift_Del	A	-	p.K135fs
LIHC	TCGA-DD-A39Y-01	SLC35A3	ENST00000370153.1,ENST00000533028.1,ENST00000427993.2,ENST00000370156.3,ENST00000370155.3	chr1	100480857:100480976:100483237:100483371:100487941:100488512,	100483238	100483371	100483342	100483342	Frame_Shift_Del	T	-	p.Y286fs
LIHC	TCGA-DD-A39Y-01	SASS6	ENST00000535161.1,ENST00000462159.1,ENST00000287482.5	chr1	100553694:100553792:100568510:100568639:100571322:100571459,	100568511	100568639	100568527	100568527	Frame_Shift_Del	G	-	p.P553fs
LIHC	TCGA-DD-A39Y-01	SASS6	ENST00000535161.1,ENST00000462159.1,ENST00000287482.5	chr1	100553694:100553792:100568510:100568639:100571322:100571459,	100568511	100568639	100568539	100568539	Frame_Shift_Del	T	-	p.N549fs
LIHC	TCGA-DD-A39Y-01	SASS6	ENST00000462159.1,ENST00000287482.5	chr1	100587935:100588040:100588765:100588845:100591437:100591498,	100588766	100588845	100588802	100588802	Frame_Shift_Del	A	-	p.L57fs
LIHC	TCGA-DD-A39Y-01	NTNG1	ENST00000370067.1,ENST00000370074.4,ENST00000370070.2,ENST00000370071.2,ENST00000370065.1,ENST00000370068.1,ENST00000294649.4,ENST00000542803.1,ENST00000370061.3,ENST00000370073.2,ENST00000370066.1,ENST00000370072.3	chr1	107691215:107691461:107866903:107867544:107937775:107937948,	107866904	107867544	107867348	107867348	Frame_Shift_Del	T	-	p.F232fs
LIHC	TCGA-DD-A39Y-01	VAV3	ENST00000371846.4,ENST00000490388.2,ENST00000527011.1	chr1	108322055:108322114:108417522:108417639:108507287:108507475,	108417523	108417639	108417610	108417610	Frame_Shift_Del	A	-	p.F78fs
LIHC	TCGA-DD-A39Y-01	SLC25A24	ENST00000565488.1,ENST00000370041.4,ENST00000264128.9	chr1	108686164:108686332:108690900:108691008:108697604:108697757,	108690901	108691008	108690916	108690916	Frame_Shift_Del	A	-	p.F305fs
LIHC	TCGA-DD-A39Y-01	SLC25A24	ENST00000565488.1,ENST00000370041.4,ENST00000264128.9	chr1	108686164:108686332:108690900:108691008:108697604:108697757,	108690901	108691008	108690964	108690964	Frame_Shift_Del	A	-	p.F289fs
LIHC	TCGA-DD-A39Y-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109446746:109446876:109456959:109457030:109461234:109461411,	109456960	109457030	109457005	109457005	Frame_Shift_Del	A	-	p.E413fs
LIHC	TCGA-DD-A39Y-01	GPSM2	ENST00000264126.3,ENST00000441735.1,ENST00000406462.2	chr1	109456998:109457030:109461234:109461411:109465038:109465198,	109461235	109461411	109461337	109461337	Frame_Shift_Del	A	-	p.K456fs
LIHC	TCGA-DD-A39Y-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466643	109466643	Frame_Shift_Del	C	-	p.S541fs
LIHC	TCGA-DD-A39Y-01	TAF13	ENST00000338366.5	chr1	109608756:109608854:109617608:109617687:109618542:109618593,	109617609	109617687	109617618	109617618	Frame_Shift_Del	A	-	p.S33fs
LIHC	TCGA-DD-A39Y-01	KIAA1324	ENST00000369939.3,ENST00000527996.1,ENST00000369938.1,ENST00000369936.1,ENST00000529753.1,ENST00000490758.2,ENST00000457623.2	chr1	109730798:109730976:109731687:109731816:109732213:109732304,	109731688	109731816	109731756	109731756	Frame_Shift_Del	C	-	p.P430fs
LIHC	TCGA-DD-A39Y-01	KIAA1324	ENST00000369939.3,ENST00000527996.1,ENST00000369938.1,ENST00000369936.1,ENST00000529753.1,ENST00000457623.2	chr1	109735232:109735496:109737042:109737216:109740095:109740150,	109737043	109737216	109737090	109737090	Frame_Shift_Del	G	-	p.P665fs
LIHC	TCGA-DD-A39Y-01	SARS	ENST00000369923.4,ENST00000234677.2	chr1	109772035:109772194:109773499:109773643:109774252:109774408,	109773500	109773643	109773620	109773620	Frame_Shift_Del	G	-	p.G190fs
LIHC	TCGA-DD-A39Y-01	SARS	ENST00000369923.4,ENST00000234677.2	chr1	109777831:109778053:109778598:109778728:109779012:109779170,	109778599	109778728	109778690	109778690	Frame_Shift_Del	C	-	p.S354fs
LIHC	TCGA-DD-A39Y-01	CELSR2	ENST00000271332.3	chr1	109808356:109808540:109808726:109808828:109810169:109810264,	109808727	109808828	109808774	109808774	Frame_Shift_Del	C	-	p.P1987fs
LIHC	TCGA-DD-A39Y-01	CELSR2	ENST00000271332.3	chr1	109808356:109808540:109808726:109808828:109810169:109810264,	109808727	109808828	109808781	109808781	Frame_Shift_Del	C	-	p.T1989fs
LIHC	TCGA-DD-A39Y-01	CELSR2	ENST00000271332.3	chr1	109810169:109810264:109810472:109810682:109811202:109811386,	109810473	109810682	109810647	109810647	Frame_Shift_Del	G	-	p.G2095fs
LIHC	TCGA-DD-A39Y-01	CELSR2	ENST00000271332.3	chr1	109812554:109812755:109813047:109813222:109813548:109813661,	109813048	109813222	109813099	109813099	Frame_Shift_Del	T	-	p.F2454fs
LIHC	TCGA-DD-A39Y-01	PSRC1	ENST00000369907.3,ENST00000369909.2,ENST00000369903.2,ENST00000492431.1,ENST00000369904.3,ENST00000438534.2,ENST00000409267.1,ENST00000409138.2	chr1	109822206:109822778:109823017:109823111:109823398:109823538,	109823018	109823111	109823047	109823047	Frame_Shift_Del	G	-	p.P353fs
LIHC	TCGA-DD-A39Y-01	PSRC1	ENST00000429031.1,ENST00000369907.3,ENST00000369909.2,ENST00000369903.2,ENST00000369904.3,ENST00000438534.2,ENST00000409267.1,ENST00000409138.2,ENST00000418914.2	chr1	109823776:109823873:109824240:109824682:109825139:109825197,	109824241	109824682	109824295	109824295	Frame_Shift_Del	C	-	p.G155fs
LIHC	TCGA-DD-A39Y-01	SORT1	ENST00000538502.1,ENST00000256637.6	chr1	109856422:109856679:109856882:109857006:109857293:109857400,	109856883	109857006	109856914	109856914	Frame_Shift_Del	T	-	p.N817fs
LIHC	TCGA-DD-A39Y-01	PSMA5	ENST00000538610.1,ENST00000271308.4,ENST00000490870.1	chr1	109954698:109954806:109955689:109955757:109957858:109957972,	109955690	109955757	109955708	109955708	Frame_Shift_Del	T	-	p.K91fs
LIHC	TCGA-DD-A39Y-01	ATXN7L2	ENST00000369870.3	chr1	110026560:110026702:110028678:110028744:110029127:110029232,	110028679	110028744	110028702	110028702	Frame_Shift_Del	A	-	p.K51fs
LIHC	TCGA-DD-A39Y-01	AMPD2	ENST00000526301.1,ENST00000528667.1,ENST00000532851.1,ENST00000528454.1,ENST00000369840.2,ENST00000393688.3,ENST00000256578.3,ENST00000342115.4,ENST00000358729.4	chr1	110171000:110171117:110171264:110171428:110171730:110171857,	110171265	110171428	110171418	110171418	Frame_Shift_Del	C	-	p.P575fs
LIHC	TCGA-DD-A39Y-01	GSTM2	ENST00000464206.1,ENST00000460717.3,ENST00000476040.2,ENST00000241337.4,ENST00000369829.2,ENST00000369831.2,ENST00000467579.3,ENST00000369827.3,ENST00000568786.1,ENST00000442650.1	chr1	110211046:110211122:110211546:110211611:110211911:110211993,	110211547	110211611	110211580	110211580	Frame_Shift_Del	A	-	p.E49fs
LIHC	TCGA-DD-A39Y-01	KCNC4	ENST00000438661.2,ENST00000413138.3,ENST00000469655.1,ENST00000369787.3	chr1	110754769:110754799:110765585:110766522:110768596:110768800,	110765586	110766522	110765816	110765816	Frame_Shift_Del	C	-	p.C303fs
LIHC	TCGA-DD-A39Y-01	KCNC4	ENST00000438661.2,ENST00000413138.3,ENST00000469655.1,ENST00000369787.3	chr1	110754769:110754799:110765585:110766522:110768596:110768800,	110765586	110766522	110766145	110766145	Frame_Shift_Del	G	-	p.R413fs
LIHC	TCGA-DD-A39Y-01	KCNC4	ENST00000438661.2,ENST00000413138.3,ENST00000469655.1,ENST00000369787.3	chr1	110754769:110754799:110765585:110766522:110768596:110768800,	110765586	110766522	110766448	110766448	Frame_Shift_Del	C	-	p.S514fs
LIHC	TCGA-DD-A39Y-01	SLC16A4	ENST00000437429.2,ENST00000541986.1,ENST00000492412.2,ENST00000528649.1,ENST00000472422.2,ENST00000369779.4	chr1	110919571:110919783:110921474:110921978:110923603:110923765,	110921475	110921978	110921612	110921612	Frame_Shift_Del	T	-	p.N298fs
LIHC	TCGA-DD-A39Y-01	SLC16A4	ENST00000369781.4,ENST00000461647.2	chr1	110921565:110921978:110923603:110923765:110924273:110924417,110921565:110921978:110923603:110923765:110931858:110931977,110919571:110919783:110923603:110923765:110924273:110924417,	110923604	110923765	110923704	110923704	Frame_Shift_Del	T	-	p.K142fs
LIHC	TCGA-DD-A39Y-01	DRAM2	ENST00000286692.4,ENST00000539140.1,ENST00000484310.1	chr1	111662498:111662581:111663137:111663315:111668848:111668916,111662498:111662581:111663137:111663315:111667363:111667503,	111663138	111663315	111663306	111663306	Frame_Shift_Del	G	-	p.L117fs
LIHC	TCGA-DD-A39Y-01	CHI3L2	ENST00000369744.2,ENST00000477185.2,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000369748.4	chr1	111778260:111778385:111778645:111778775:111781371:111781381,	111778646	111778775	111778655	111778655	Frame_Shift_Del	T	-	p.D205fs
LIHC	TCGA-DD-A39Y-01	PIFO	ENST00000484512.1	chr1	111889241:111889293:111889531:111889671:111891137:111891268,111889241:111889293:111889531:111889671:111890295:111890394,	111889532	111889671	111889594	111889594	Frame_Shift_Del	C	-	p.P29fs
LIHC	TCGA-DD-A39Y-01	PIFO	ENST00000369738.4,ENST00000484512.1	chr1	111889531:111889671:111890295:111890394:111891137:111891170,	111890296	111890394	111890340	111890340	Frame_Shift_Del	A	-	p.I68fs
LIHC	TCGA-DD-A39Y-01	OVGP1	ENST00000369732.3	chr1	111962231:111962348:111963897:111964083:111964186:111964295,	111963898	111964083	111964018	111964018	Frame_Shift_Del	G	-	p.P261fs
LIHC	TCGA-DD-A39Y-01	OVGP1	ENST00000481495.1	chr1	111962231:111962348:111963897:111964295:111965548:111965673,	111963898	111964295	111964018	111964018	Frame_Shift_Del	G	-	p.P261fs
LIHC	TCGA-DD-A39Y-01	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000544629.1,ENST00000369666.1,ENST00000369669.1,ENST00000543570.1,ENST00000369668.2,ENST00000343210.7,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000360743.4,ENST00000361846.3	chr1	113120966:113121039:113124613:113124728:113124996:113125094,	113124614	113124728	113124621	113124621	Frame_Shift_Del	T	-	p.K354fs
LIHC	TCGA-DD-A39Y-01	MOV10	ENST00000468624.1,ENST00000496577.1,ENST00000369645.1,ENST00000413052.2,ENST00000369644.1,ENST00000357443.2	chr1	113238769:113238873:113239058:113239156:113239251:113239468,	113239059	113239156	113239132	113239132	Frame_Shift_Del	C	-	p.P597fs
LIHC	TCGA-DD-A39Y-01	FAM19A3	ENST00000361886.3	chr1	113265637:113265787:113266634:113266759:113269250:113269857,	113266635	113266759	113266684	113266684	Frame_Shift_Del	G	-	p.R128fs
LIHC	TCGA-DD-A39Y-01	FAM19A3	ENST00000369630.3	chr1	113265637:113265787:113266566:113266759:113269250:113269857,	113266567	113266759	113266684	113266684	Frame_Shift_Del	G	-	p.R128fs
LIHC	TCGA-DD-A39Y-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113459864	113459864	Frame_Shift_Del	G	-	p.S389fs
LIHC	TCGA-DD-A39Y-01	LRIG2	ENST00000466161.1,ENST00000361127.5,ENST00000492207.1	chr1	113650215:113650379:113652863:113653184:113655100:113655382,	113652864	113653184	113653086	113653086	Frame_Shift_Del	T	-	p.L567fs
LIHC	TCGA-DD-A39Y-01	PHTF1	ENST00000447664.2	chr1	114255900:114256060:114267380:114267515:114269039:114269080,114254561:114254735:114267380:114267515:114269039:114269080,	114267381	114267515	114267403	114267403	Frame_Shift_Del	A	-	p.W201fs
LIHC	TCGA-DD-A39Y-01	AP4B1	ENST00000369569.1,ENST00000489499.1,ENST00000369571.2,ENST00000256658.4	chr1	114442952:114443022:114445259:114445484:114447226:114447415,114444380:114444507:114445259:114445484:114447226:114447415,	114445260	114445484	114445448	114445448	Frame_Shift_Del	A	-	p.F50fs
LIHC	TCGA-DD-A39Y-01	DENND2C	ENST00000393277.1,ENST00000481894.1,ENST00000393274.1	chr1	115161006:115161103:115164515:115164686:115165607:115165720,	115164516	115164686	115164526	115164526	Frame_Shift_Del	T	-	p.N406fs
LIHC	TCGA-DD-A39Y-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115220530:115220662:115220953:115221148:115222199:115222329,	115220954	115221148	115221011	115221011	Frame_Shift_Del	A	-	p.F374fs
LIHC	TCGA-DD-A39Y-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115222309:115222329:115222879:115223099:115226819:115226985,	115222880	115223099	115222907	115222907	Frame_Shift_Del	A	-	p.L277fs
LIHC	TCGA-DD-A39Y-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115261233:115261366:115262199:115262363:115263159:115263338,	115262200	115262363	115262317	115262317	Frame_Shift_Del	A	-	p.F746fs
LIHC	TCGA-DD-A39Y-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115269603:115269711:115272878:115273043:115273128:115273269,	115272879	115273043	115272999	115272999	Frame_Shift_Del	T	-	p.K458fs
LIHC	TCGA-DD-A39Y-01	CSDE1	ENST00000369530.1,ENST00000438362.2	chr1	115282373:115282511:115284147:115284294:115292441:115292525,	115284148	115284294	115284178	115284178	Frame_Shift_Del	T	-	p.K36fs
LIHC	TCGA-DD-A39Y-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430252	115430252	Frame_Shift_Del	A	-	p.E399fs
LIHC	TCGA-DD-A39Y-01	ATP1A1	ENST00000488733.1,ENST00000295598.5	chr1	116915890:116916145:116926635:116926746:116927404:116927464,	116926636	116926746	116926702	116926702	Frame_Shift_Del	A	-	p.K28fs
LIHC	TCGA-DD-A39Y-01	ATP1A1	ENST00000369494.1,ENST00000537345.1,ENST00000295598.5,ENST00000369496.4	chr1	116929924:116930113:116930752:116930866:116931259:116931285,	116930753	116930866	116930822	116930822	Frame_Shift_Del	A	-	p.K153fs
LIHC	TCGA-DD-A39Y-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087123	117087123	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A39Y-01	PTGFRN	ENST00000393203.2	chr1	117484336:117484705:117487300:117487714:117491813:117492194,	117487301	117487714	117487534	117487534	Frame_Shift_Del	G	-	p.G218fs
LIHC	TCGA-DD-A39Y-01	VTCN1	ENST00000369458.3,ENST00000539893.1,ENST00000359008.4	chr1	117695830:117695991:117699195:117699543:117712728:117712784,	117699196	117699543	117699285	117699285	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A39Y-01	VTCN1	ENST00000463461.1	chr1	117695830:117695991:117699195:117699633:117712728:117712784,	117699196	117699633	117699285	117699285	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A39Y-01	SPAG17	ENST00000492438.1,ENST00000336338.5,ENST00000437255.1,ENST00000483383.1	chr1	118516104:118516184:118523892:118524024:118526433:118526536,	118523893	118524024	118523966	118523966	Frame_Shift_Del	T	-	p.K1977fs
LIHC	TCGA-DD-A39Y-01	SPAG17	ENST00000336338.5	chr1	118598355:118598537:118609367:118609522:118616476:118616590,	118609368	118609522	118609416	118609416	Frame_Shift_Del	A	-	p.L831fs
LIHC	TCGA-DD-A39Y-01	WARS2	ENST00000495746.1,ENST00000235521.4	chr1	119588204:119588285:119618972:119619230:119683177:119683261,	119618973	119619230	119619206	119619206	Frame_Shift_Del	A	-	p.S39fs
LIHC	TCGA-DD-A39Y-01	HMGCS2	ENST00000369406.3,ENST00000544913.2	chr1	120291006:120291464:120293419:120293531:120295171:120295297,	120293420	120293531	120293439	120293439	Frame_Shift_Del	G	-	p.R506fs
LIHC	TCGA-DD-A39Y-01	NOTCH2	ENST00000256646.2	chr1	120454175:120459317:120460287:120460385:120461028:120461176,	120460288	120460385	120460319	120460319	Frame_Shift_Del	T	-	p.N1999fs
LIHC	TCGA-DD-A39Y-01	NOTCH2	ENST00000256646.2	chr1	120484148:120484377:120491036:120491189:120491629:120491749,	120491037	120491189	120491167	120491167	Frame_Shift_Del	A	-	p.I874fs
LIHC	TCGA-DD-A39Y-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120510055:120510244:120510699:120510855:120512133:120512367,	120510700	120510855	120510722	120510722	Frame_Shift_Del	T	-	p.E414fs
LIHC	TCGA-DD-A39Y-01	PDE4DIP	ENST00000491426.2,ENST00000369354.3,ENST00000313382.9,ENST00000369349.3,ENST00000369359.4,ENST00000369351.3,ENST00000313431.9,ENST00000369356.4,ENST00000530740.1	chr1	144892500:144892589:144903076:144903204:144904624:144904679,	144903077	144903204	144903164	144903164	Frame_Shift_Del	C	-	p.A1073fs
LIHC	TCGA-DD-A39Y-01	PDE4DIP	ENST00000467859.2	chr1	144906420:144906537:144909868:144909960:144911881:144911963,144895088:144895290:144909868:144909960:144911881:144911963,	144909869	144909960	144909880	144909880	Frame_Shift_Del	T	-	p.R933fs
LIHC	TCGA-DD-A39Y-01	POLR3GL	ENST00000369313.3	chr1	145457547:145457604:145460096:145460263:145470321:145470374,145459651:145459781:145460096:145460263:145470321:145470374,	145460097	145460263	145460185	145460185	Frame_Shift_Del	C	-	p.G13fs
LIHC	TCGA-DD-A39Y-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561111	145561111	Frame_Shift_Del	C	-	p.P267fs
LIHC	TCGA-DD-A39Y-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561841	145561841	Frame_Shift_Del	G	-	p.R510fs
LIHC	TCGA-DD-A39Y-01	PIAS3	ENST00000393046.2,ENST00000369298.1,ENST00000369299.3,ENST00000498436.1,ENST00000393045.2	chr1	145578949:145579000:145579241:145579332:145580187:145580322,	145579242	145579332	145579285	145579285	Frame_Shift_Del	C	-	p.P209fs
LIHC	TCGA-DD-A39Y-01	PIAS3	ENST00000369298.1,ENST00000472114.1,ENST00000475261.1,ENST00000393045.2	chr1	145584128:145584297:145584481:145584615:145584798:145584836,	145584482	145584615	145584551	145584551	Frame_Shift_Del	T	-	p.D506fs
LIHC	TCGA-DD-A39Y-01	POLR3C	ENST00000369294.1,ENST00000471254.1	chr1	145608620:145608659:145609189:145609356:145610743:145610884,	145609190	145609356	145609216	145609216	Frame_Shift_Del	G	-	p.H41fs
LIHC	TCGA-DD-A39Y-01	GPR89A	ENST00000528944.1,ENST00000460277.1,ENST00000454423.3,ENST00000532574.1	chr1	145816708:145816740:145818766:145818826:145826887:145827015,	145818767	145818826	145818815	145818815	Frame_Shift_Del	A	-	p.F18fs
LIHC	TCGA-DD-A39Y-01	FMO5	ENST00000369272.3	chr1	146672733:146673086:146680413:146680613:146683960:146684103,146661755:146661828:146680413:146680613:146683960:146684103,	146680414	146680613	146680465	146680465	Frame_Shift_Del	T	-	p.K260fs
LIHC	TCGA-DD-A39Y-01	MTMR11	ENST00000369140.3,ENST00000439741.2	chr1	149902683:149902857:149903151:149903318:149903835:149903906,	149903152	149903318	149903171	149903171	Frame_Shift_Del	C	-	p.G424fs
LIHC	TCGA-DD-A39Y-01	VPS45	ENST00000369130.3,ENST00000462852.1	chr1	150048310:150048390:150048993:150049062:150049171:150049309,	150048994	150049062	150049046	150049046	Frame_Shift_Del	T	-	p.I141fs
LIHC	TCGA-DD-A39Y-01	ANP32E	ENST00000533654.1	chr1	150192839:150193063:150198939:150199127:150202905:150203028,	150198940	150199127	150198986	150198986	Frame_Shift_Del	C	-	p.G212fs
LIHC	TCGA-DD-A39Y-01	CA14	ENST00000607652.1,ENST00000369111.4,ENST00000483993.2	chr1	150233976:150234037:150234556:150234699:150234923:150235019,	150234557	150234699	150234603	150234603	Frame_Shift_Del	A	-	p.R101fs
LIHC	TCGA-DD-A39Y-01	CA14	ENST00000607652.1,ENST00000369111.4,ENST00000483993.2	chr1	150233976:150234037:150234556:150234699:150234923:150235019,	150234557	150234699	150234655	150234655	Frame_Shift_Del	G	-	p.G120fs
LIHC	TCGA-DD-A39Y-01	CA14	ENST00000369111.4	chr1	150235202:150235269:150235440:150235598:150235697:150235818,	150235441	150235598	150235533	150235533	Frame_Shift_Del	C	-	p.P220fs
LIHC	TCGA-DD-A39Y-01	C1orf54	ENST00000369099.3,ENST00000369102.1,ENST00000369098.3	chr1	150245201:150245266:150246489:150246573:150248149:150248208,	150246490	150246573	150246562	150246562	Frame_Shift_Del	C	-	p.T40fs
LIHC	TCGA-DD-A39Y-01	PRPF3	ENST00000543398.1	chr1	150307405:150307712:150310635:150310802:150312873:150312953,150307405:150307712:150310635:150310802:150312878:150312953,	150310636	150310802	150310760	150310760	Frame_Shift_Del	T	-	p.I387fs
LIHC	TCGA-DD-A39Y-01	RPRD2	ENST00000369068.4	chr1	150413398:150413499:150414356:150414434:150415706:150415759,	150414357	150414434	150414386	150414386	Frame_Shift_Del	A	-	p.K156fs
LIHC	TCGA-DD-A39Y-01	RPRD2	ENST00000401000.4,ENST00000539519.1,ENST00000492220.1,ENST00000369068.4	chr1	150429763:150430046:150432535:150432793:150437002:150437203,	150432536	150432793	150432551	150432551	Frame_Shift_Del	A	-	p.E364fs
LIHC	TCGA-DD-A39Y-01	ECM1	ENST00000346569.6,ENST00000369047.4	chr1	150482136:150482238:150482397:150482478:150482577:150482628,	150482398	150482478	150482403	150482403	Frame_Shift_Del	C	-	p.P79fs
LIHC	TCGA-DD-A39Y-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482403	150482403	Frame_Shift_Del	C	-	p.P79fs
LIHC	TCGA-DD-A39Y-01	ECM1	ENST00000346569.6,ENST00000369047.4	chr1	150482136:150482238:150482397:150482478:150482577:150482628,	150482398	150482478	150482425	150482425	Frame_Shift_Del	C	-	p.T84fs
LIHC	TCGA-DD-A39Y-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482425	150482425	Frame_Shift_Del	C	-	p.T84fs
LIHC	TCGA-DD-A39Y-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150528672:150528842:150529096:150529269:150529414:150529526,	150529097	150529269	150529166	150529166	Frame_Shift_Del	G	-	p.R549fs
LIHC	TCGA-DD-A39Y-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000489159.1,ENST00000369039.5	chr1	150531762:150531942:150532236:150532381:150532535:150533143,	150532237	150532381	150532301	150532301	Frame_Shift_Del	C	-	p.T1003fs
LIHC	TCGA-DD-A39Y-01	HORMAD1	ENST00000442853.1,ENST00000322343.7,ENST00000368987.1,ENST00000361824.2,ENST00000368995.4,ENST00000368993.2	chr1	150679105:150679285:150680731:150680883:150681369:150681437,	150680732	150680883	150680744	150680744	Frame_Shift_Del	A	-	p.Y180fs
LIHC	TCGA-DD-A39Y-01	HORMAD1	ENST00000442853.1,ENST00000322343.7,ENST00000368987.1,ENST00000361824.2,ENST00000368995.4,ENST00000368993.2	chr1	150679105:150679285:150680731:150680883:150681369:150681437,	150680732	150680883	150680841	150680841	Frame_Shift_Del	G	-	p.T146fs
LIHC	TCGA-DD-A39Y-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000368993.2	chr1	150686560:150686597:150689613:150689758:150691948:150692014,150687090:150687154:150689613:150689758:150691948:150692014,	150689614	150689758	150689655	150689655	Frame_Shift_Del	C	-	p.G46fs
LIHC	TCGA-DD-A39Y-01	HORMAD1	ENST00000476530.1	chr1	150687090:150687154:150689613:150689783:150691948:150692014,	150689614	150689783	150689655	150689655	Frame_Shift_Del	C	-	p.G46fs
LIHC	TCGA-DD-A39Y-01	CTSS	ENST00000448301.2,ENST00000368985.3	chr1	150720271:150720355:150722481:150722647:150724256:150724310,	150722482	150722647	150722598	150722598	Frame_Shift_Del	T	-	p.K226fs
LIHC	TCGA-DD-A39Y-01	CTSK	ENST00000271651.3,ENST00000443913.1	chr1	150778336:150778492:150778577:150778700:150779161:150779244,	150778578	150778700	150778663	150778663	Frame_Shift_Del	T	-	p.N53fs
LIHC	TCGA-DD-A39Y-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923065	150923065	Frame_Shift_Del	T	-	p.L571fs
LIHC	TCGA-DD-A39Y-01	CERS2	ENST00000345896.4,ENST00000460664.1,ENST00000560793.2,ENST00000561294.1,ENST00000368949.4,ENST00000368954.5,ENST00000271688.6	chr1	150939039:150939105:150939231:150939338:150939549:150939678,	150939232	150939338	150939264	150939264	Frame_Shift_Del	A	-	p.F272fs
LIHC	TCGA-DD-A39Y-01	GABPB2	ENST00000368917.1,ENST00000368918.3,ENST00000462520.1,ENST00000368916.1	chr1	151060945:151060993:151062881:151063049:151065667:151065862,151060665:151060773:151062881:151063049:151065667:151065862,	151062882	151063049	151062894	151062894	Frame_Shift_Del	C	-	p.P41fs
LIHC	TCGA-DD-A39Y-01	GABPB2	ENST00000368917.1,ENST00000368918.3,ENST00000462520.1,ENST00000368916.1	chr1	151060945:151060993:151062881:151063049:151065667:151065862,151060665:151060773:151062881:151063049:151065667:151065862,	151062882	151063049	151062991	151062991	Frame_Shift_Del	C	-	p.T73fs
LIHC	TCGA-DD-A39Y-01	GABPB2	ENST00000368918.3,ENST00000489549.1	chr1	151070327:151070478:151076037:151076151:151079512:151079653,	151076038	151076151	151076042	151076042	Frame_Shift_Del	C	-	p.D209fs
LIHC	TCGA-DD-A39Y-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368912.3,ENST00000368913.3	chr1	151107638:151107785:151108066:151108240:151108486:151108554,	151108067	151108240	151108115	151108115	Frame_Shift_Del	C	-	p.G462fs
LIHC	TCGA-DD-A39Y-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368912.3,ENST00000368913.3	chr1	151108486:151108639:151108923:151109055:151109332:151109403,	151108924	151109055	151108926	151108926	Frame_Shift_Del	G	-	p.P368fs
LIHC	TCGA-DD-A39Y-01	VPS72	ENST00000368892.4,ENST00000491094.2,ENST00000496809.1,ENST00000354473.4	chr1	151150476:151150621:151156792:151156969:151157981:151158096,	151156793	151156969	151156832	151156832	Frame_Shift_Del	C	-	p.E175fs
LIHC	TCGA-DD-A39Y-01	PIP5K1A	ENST00000368888.4,ENST00000349792.5,ENST00000409426.1,ENST00000368890.4,ENST00000489625.1,ENST00000441902.2	chr1	151214913:151215043:151219395:151219441:151220338:151220364,	151219396	151219441	151219437	151219437	Frame_Shift_Del	C	-	p.549fs
LIHC	TCGA-DD-A39Y-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288306	151288306	Frame_Shift_Del	C	-	p.A230fs
LIHC	TCGA-DD-A39Y-01	SELENBP1	ENST00000447402.3,ENST00000424475.1,ENST00000493560.1,ENST00000470345.1,ENST00000423070.1,ENST00000427977.2,ENST00000368868.5,ENST00000426705.2,ENST00000458566.1,ENST00000455397.1,ENST00000443708.1,ENST00000463664.1,ENST00000435071.1	chr1	151338147:151338160:151338243:151338322:151338750:151338929,	151338244	151338322	151338281	151338281	Frame_Shift_Del	G	-	p.P337fs
LIHC	TCGA-DD-A39Y-01	SELENBP1	ENST00000474352.1	chr1	151338147:151338160:151338243:151338929:151339197:151339380,	151338244	151338929	151338281	151338281	Frame_Shift_Del	G	-	p.P337fs
LIHC	TCGA-DD-A39Y-01	SELENBP1	ENST00000447402.3,ENST00000424475.1,ENST00000493560.1,ENST00000470345.1,ENST00000423070.1,ENST00000427977.2,ENST00000368868.5,ENST00000426705.2,ENST00000458566.1,ENST00000443708.1,ENST00000463664.1,ENST00000435071.1,ENST00000474352.1	chr1	151338750:151338929:151339197:151339380:151340674:151340795,	151339198	151339380	151339214	151339214	Frame_Shift_Del	G	-	p.P258fs
LIHC	TCGA-DD-A39Y-01	TUFT1	ENST00000353024.3,ENST00000538902.1,ENST00000392712.3,ENST00000368848.2,ENST00000368849.3	chr1	151546745:151546874:151547386:151547481:151551196:151551302,	151547387	151547481	151547478	151547478	Frame_Shift_Del	A	-	p.E272fs
LIHC	TCGA-DD-A39Y-01	SNX27	ENST00000368843.3,ENST00000458013.2	chr1	151584557:151584988:151611363:151611595:151630710:151630903,	151611364	151611595	151611382	151611382	Frame_Shift_Del	G	-	p.E110fs
LIHC	TCGA-DD-A39Y-01	TDRKH	ENST00000440583.2,ENST00000458431.2,ENST00000526413.1,ENST00000525790.1,ENST00000368827.6,ENST00000368822.1,ENST00000368823.1,ENST00000368824.3,ENST00000368825.3	chr1	151746888:151746980:151747185:151747282:151747540:151747642,	151747186	151747282	151747233	151747233	Frame_Shift_Del	T	-	p.K529fs
LIHC	TCGA-DD-A39Y-01	PGLYRP4	ENST00000359650.5	chr1	153315565:153315684:153317644:153317858:153318577:153318667,	153317645	153317858	153317788	153317788	Frame_Shift_Del	A	-	p.I66fs
LIHC	TCGA-DD-A39Y-01	PGLYRP4	ENST00000368739.3	chr1	153315565:153315684:153317644:153317846:153318577:153318667,	153317645	153317846	153317788	153317788	Frame_Shift_Del	A	-	p.I66fs
LIHC	TCGA-DD-A39Y-01	ILF2	ENST00000361891.4	chr1	153635494:153635609:153635690:153635752:153636518:153636606,	153635691	153635752	153635726	153635726	Frame_Shift_Del	G	-	p.P257fs
LIHC	TCGA-DD-A39Y-01	ILF2	ENST00000480213.1	chr1	153635180:153635271:153635494:153635752:153636518:153636606,	153635495	153635752	153635726	153635726	Frame_Shift_Del	G	-	p.P257fs
LIHC	TCGA-DD-A39Y-01	NPR1	ENST00000368680.3	chr1	153659491:153659563:153659675:153659832:153660109:153660265,	153659676	153659832	153659697	153659697	Frame_Shift_Del	G	-	p.G653fs
LIHC	TCGA-DD-A39Y-01	SLC27A3	ENST00000483574.2,ENST00000368661.3,ENST00000484014.1	chr1	153748442:153748640:153748993:153749203:153749537:153749696,	153748994	153749203	153749064	153749064	Frame_Shift_Del	C	-	p.G374fs
LIHC	TCGA-DD-A39Y-01	SLC27A3	ENST00000483574.2,ENST00000368661.3,ENST00000484014.1	chr1	153748442:153748640:153748993:153749203:153749537:153749696,	153748994	153749203	153749150	153749150	Frame_Shift_Del	C	-	p.S403fs
LIHC	TCGA-DD-A39Y-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153911375:153911521:153912064:153912280:153912631:153912732,	153912065	153912280	153912242	153912242	Frame_Shift_Del	G	-	p.L549fs
LIHC	TCGA-DD-A39Y-01	CRTC2	ENST00000368633.1,ENST00000303569.6,ENST00000461638.2	chr1	153921741:153921860:153923735:153924142:153924493:153924738,	153923736	153924142	153924090	153924090	Frame_Shift_Del	G	-	p.P350fs
LIHC	TCGA-DD-A39Y-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934772	153934772	Frame_Shift_Del	A	-	p.L81fs
LIHC	TCGA-DD-A39Y-01	CREB3L4	ENST00000492729.1,ENST00000368600.3	chr1	153940739:153940786:153940997:153941115:153941405:153941444,	153940998	153941115	153941097	153941097	Frame_Shift_Del	C	-	p.C32fs
LIHC	TCGA-DD-A39Y-01	CREB3L4	ENST00000479010.1,ENST00000368603.1,ENST00000368601.1	chr1	153940739:153940786:153940997:153941175:153941405:153941444,	153940998	153941175	153941097	153941097	Frame_Shift_Del	C	-	p.C32fs
LIHC	TCGA-DD-A39Y-01	CREB3L4	ENST00000449724.1,ENST00000461688.1,ENST00000368600.3	chr1	153940997:153941175:153941405:153941652:153941809:153941931,153941000:153941115:153941405:153941652:153941809:153941931,	153941406	153941652	153941513	153941513	Frame_Shift_Del	C	-	p.D94fs
LIHC	TCGA-DD-A39Y-01	CREB3L4	ENST00000492729.1	chr1	153941000:153941115:153941405:153941931:153945219:153945244,	153941406	153941931	153941513	153941513	Frame_Shift_Del	C	-	p.D94fs
LIHC	TCGA-DD-A39Y-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	153999981:154000073:154002371:154002530:154018544:154018676,	154002372	154002530	154002414	154002414	Frame_Shift_Del	A	-	p.F1271fs
LIHC	TCGA-DD-A39Y-01	NUP210L	ENST00000368559.3,ENST00000271854.3	chr1	154031040:154031169:154033015:154033117:154033417:154033522,	154033016	154033117	154033080	154033080	Frame_Shift_Del	A	-	p.L929fs
LIHC	TCGA-DD-A39Y-01	TPM3	ENST00000368530.2,ENST00000271850.7	chr1	154145559:154145677:154148590:154148724:154155463:154155554,154145559:154145677:154148590:154148724:154163661:154163787,	154148591	154148724	154148611	154148611	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A39Y-01	TPM3	ENST00000312970.8	chr1	154145559:154145677:154148590:154148655:154155463:154155554,	154148591	154148655	154148611	154148611	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A39Y-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246412	154246412	Frame_Shift_Del	G	-	p.W160fs
LIHC	TCGA-DD-A39Y-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246412	154246412	Frame_Shift_Del	G	-	p.W160fs
LIHC	TCGA-DD-A39Y-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246412	154246412	Frame_Shift_Del	G	-	p.W160fs
LIHC	TCGA-DD-A39Y-01	ATP8B2	ENST00000341822.2,ENST00000368489.3	chr1	154306978:154307067:154309823:154310020:154313329:154313538,	154309824	154310020	154309847	154309847	Frame_Shift_Del	G	-	p.M320fs
LIHC	TCGA-DD-A39Y-01	ADAR	ENST00000368471.3,ENST00000368474.4,ENST00000292205.5,ENST00000529168.1	chr1	154560600:154560734:154561026:154561149:154561844:154561938,	154561027	154561149	154561078	154561078	Frame_Shift_Del	C	-	p.G946fs
LIHC	TCGA-DD-A39Y-01	SHC1	ENST00000368453.4,ENST00000448116.2	chr1	154938018:154938257:154938421:154938556:154938637:154938707,	154938422	154938556	154938468	154938468	Frame_Shift_Del	G	-	p.P447fs
LIHC	TCGA-DD-A39Y-01	SHC1	ENST00000368445.5,ENST00000444664.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938018:154938257:154938421:154938553:154938637:154938707,	154938422	154938553	154938468	154938468	Frame_Shift_Del	G	-	p.P447fs
LIHC	TCGA-DD-A39Y-01	SHC1	ENST00000368445.5,ENST00000368453.4,ENST00000448116.2,ENST00000414115.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938637:154938707:154938794:154938993:154940146:154940273,	154938795	154938993	154938851	154938851	Frame_Shift_Del	C	-	p.A377fs
LIHC	TCGA-DD-A39Y-01	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3,ENST00000368428.1	chr1	154961252:154961325:154962035:154962183:154962634:154962733,	154962036	154962183	154962131	154962131	Frame_Shift_Del	G	-	p.G406fs
LIHC	TCGA-DD-A39Y-01	ADAM15	ENST00000360674.4,ENST00000474709.1	chr1	155033238:155033308:155034720:155034845:155034935:155035066,155032741:155032819:155034720:155034845:155034935:155035145,	155034721	155034845	155034745	155034745	Frame_Shift_Del	C	-	p.P818fs
LIHC	TCGA-DD-A39Y-01	THBS3	ENST00000541990.1	chr1	155174850:155175107:155175983:155176197:155177588:155177688,	155175984	155176197	155176079	155176079	Frame_Shift_Del	G	-	p.P66fs
LIHC	TCGA-DD-A39Y-01	THBS3	ENST00000368378.3	chr1	155174850:155175107:155175990:155176197:155177588:155177688,	155175991	155176197	155176079	155176079	Frame_Shift_Del	G	-	p.P66fs
LIHC	TCGA-DD-A39Y-01	GBA	ENST00000427500.3	chr1	155208354:155208441:155209676:155209868:155210420:155210508,	155209677	155209868	155209723	155209723	Frame_Shift_Del	C	-	p.R87fs
LIHC	TCGA-DD-A39Y-01	FAM189B	ENST00000491082.1,ENST00000361361.2,ENST00000350210.2,ENST00000472550.1	chr1	155221292:155221392:155221523:155221696:155223415:155223523,	155221524	155221696	155221578	155221578	Frame_Shift_Del	G	-	p.P249fs
LIHC	TCGA-DD-A39Y-01	FAM189B	ENST00000368368.3	chr1	155221292:155221392:155221523:155221699:155223415:155223523,	155221524	155221699	155221578	155221578	Frame_Shift_Del	G	-	p.P249fs
LIHC	TCGA-DD-A39Y-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000481822.1	chr1	155223415:155223523:155223649:155223769:155223874:155223985,	155223650	155223769	155223658	155223658	Frame_Shift_Del	C	-	p.A169fs
LIHC	TCGA-DD-A39Y-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155264272:155264543:155264906:155265093:155265227:155265359,	155264907	155265093	155264957	155264957	Frame_Shift_Del	C	-	p.G184fs
LIHC	TCGA-DD-A39Y-01	FDPS	ENST00000465559.1,ENST00000447866.1,ENST00000468479.1,ENST00000489003.1,ENST00000461507.1,ENST00000495308.1,ENST00000491013.1,ENST00000467076.1,ENST00000470171.1,ENST00000477057.1,ENST00000356657.6,ENST00000368356.4	chr1	155278704:155278756:155282045:155282186:155287731:155287773,155279854:155279996:155282045:155282186:155287731:155287773,	155282046	155282186	155282087	155282087	Frame_Shift_Del	T	-	p.G127fs
LIHC	TCGA-DD-A39Y-01	FDPS	ENST00000447866.1,ENST00000356657.6,ENST00000368356.4,ENST00000490140.1	chr1	155289401:155289479:155289584:155289719:155290199:155290400,	155289585	155289719	155289611	155289611	Frame_Shift_Del	C	-	p.D317fs
LIHC	TCGA-DD-A39Y-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155447847	155447847	Frame_Shift_Del	T	-	p.N1605fs
LIHC	TCGA-DD-A39Y-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449515	155449515	Frame_Shift_Del	T	-	p.K1049fs
LIHC	TCGA-DD-A39Y-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449696	155449696	Frame_Shift_Del	T	-	p.M989fs
LIHC	TCGA-DD-A39Y-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450183	155450183	Frame_Shift_Del	G	-	p.P826fs
LIHC	TCGA-DD-A39Y-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491186	155491186	Frame_Shift_Del	T	-	p.N42fs
LIHC	TCGA-DD-A39Y-01	YY1AP1	ENST00000295566.4,ENST00000407221.1,ENST00000311573.5,ENST00000535662.1,ENST00000404643.1,ENST00000368340.5	chr1	155638514:155638568:155640110:155640255:155642311:155642522,155638514:155638568:155640110:155640255:155642350:155642518,155638417:155638508:155640110:155640255:155642350:155642518,	155640111	155640255	155640163	155640163	Frame_Shift_Del	G	-	p.L364fs
LIHC	TCGA-DD-A39Y-01	DAP3	ENST00000465375.1,ENST00000462002.1,ENST00000471523.1,ENST00000343043.3,ENST00000368336.5,ENST00000497826.1,ENST00000496863.1,ENST00000471214.1,ENST00000463575.1	chr1	155679563:155679615:155686796:155686919:155691307:155691409,	155686797	155686919	155686811	155686811	Frame_Shift_Del	T	-	p.R20fs
LIHC	TCGA-DD-A39Y-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155722994:155723205:155724165:155724279:155726748:155726868,	155724166	155724279	155724195	155724195	Frame_Shift_Del	T	-	p.R1869fs
LIHC	TCGA-DD-A39Y-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000467009.1,ENST00000437809.1,ENST00000361040.5,ENST00000271883.5	chr1	155774739:155774932:155783424:155783595:155784120:155784240,	155783425	155783595	155783531	155783531	Frame_Shift_Del	G	-	p.P452fs
LIHC	TCGA-DD-A39Y-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823239	155823239	Frame_Shift_Del	A	-	p.F111fs
LIHC	TCGA-DD-A39Y-01	ARHGEF2	ENST00000368316.1,ENST00000361247.4,ENST00000313695.7,ENST00000313667.4,ENST00000368315.4,ENST00000470975.2,ENST00000462460.2	chr1	155922593:155922619:155924692:155924760:155927503:155927673,	155924693	155924760	155924755	155924755	Frame_Shift_Del	G	-	p.P546fs
LIHC	TCGA-DD-A39Y-01	ARHGEF2	ENST00000368316.1,ENST00000361247.4,ENST00000313695.7,ENST00000313667.4,ENST00000368315.4,ENST00000474428.2,ENST00000462460.2	chr1	155928110:155928187:155931451:155931700:155931895:155932013,	155931452	155931700	155931660	155931660	Frame_Shift_Del	C	-	p.G392fs
LIHC	TCGA-DD-A39Y-01	LMNA	ENST00000498722.2,ENST00000496738.1,ENST00000368299.3,ENST00000508500.1,ENST00000361308.4,ENST00000368297.1,ENST00000448611.2,ENST00000347559.2,ENST00000368301.2,ENST00000392353.3,ENST00000368300.4,ENST00000473598.2	chr1	156105877:156105912:156106004:156106227:156106711:156106819,	156106005	156106227	156106179	156106179	Frame_Shift_Del	G	-	p.E444fs
LIHC	TCGA-DD-A39Y-01	SEMA4A	ENST00000368285.3,ENST00000435124.1,ENST00000355014.2,ENST00000368286.2,ENST00000368282.1,ENST00000438830.1	chr1	156124340:156124508:156126204:156126365:156127860:156127923,	156126205	156126365	156126299	156126299	Frame_Shift_Del	G	-	p.V78fs
LIHC	TCGA-DD-A39Y-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156131136:156131309:156132734:156132885:156142616:156142797,	156132735	156132885	156132870	156132870	Frame_Shift_Del	C	-	p.N373fs
LIHC	TCGA-DD-A39Y-01	SMG5	ENST00000361813.5	chr1	156219823:156220461:156220648:156220787:156221193:156221268,	156220649	156220787	156220673	156220673	Frame_Shift_Del	G	-	p.P981fs
LIHC	TCGA-DD-A39Y-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255442	156255442	Frame_Shift_Del	A	-	p.Q142fs
LIHC	TCGA-DD-A39Y-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255442	156255442	Frame_Shift_Del	A	-	p.Q142fs
LIHC	TCGA-DD-A39Y-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255442	156255442	Frame_Shift_Del	A	-	p.Q142fs
LIHC	TCGA-DD-A39Y-01	CCT3	ENST00000368258.3,ENST00000368261.3,ENST00000472765.2,ENST00000295688.3,ENST00000368262.3,ENST00000368259.2	chr1	156280348:156280480:156280740:156280986:156281831:156282012,	156280741	156280986	156280905	156280905	Frame_Shift_Del	C	-	p.A413fs
LIHC	TCGA-DD-A39Y-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351945	156351945	Frame_Shift_Del	G	-	p.L323fs
LIHC	TCGA-DD-A39Y-01	MEF2D	ENST00000493077.1,ENST00000464356.2,ENST00000360595.3,ENST00000368240.2,ENST00000348159.4,ENST00000340875.5,ENST00000353795.3	chr1	156446803:156446994:156449081:156449138:156449377:156449572,	156449082	156449138	156449123	156449123	Frame_Shift_Del	C	-	p.G208fs
LIHC	TCGA-DD-A39Y-01	MEF2D	ENST00000360595.3,ENST00000368240.2,ENST00000348159.4	chr1	156449081:156449138:156449377:156449588:156452228:156452432,156449081:156449138:156449377:156449588:156450625:156450763,	156449378	156449588	156449462	156449462	Frame_Shift_Del	C	-	p.D175fs
LIHC	TCGA-DD-A39Y-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156503800:156503933:156504292:156504525:156504954:156505039,	156504293	156504525	156504420	156504420	Frame_Shift_Del	G	-	p.Q1205fs
LIHC	TCGA-DD-A39Y-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156532925:156533104:156533344:156533458:156533548:156533616,	156533345	156533458	156533383	156533383	Frame_Shift_Del	C	-	p.G194fs
LIHC	TCGA-DD-A39Y-01	TTC24	ENST00000368237.3,ENST00000368236.3	chr1	156555504:156555618:156555740:156555837:156556260:156556562,	156555741	156555837	156555823	156555823	Frame_Shift_Del	C	-	p.G551fs
LIHC	TCGA-DD-A39Y-01	GPATCH4	ENST00000438976.2,ENST00000531129.1,ENST00000368232.4	chr1	156565872:156565923:156566178:156566270:156568018:156568111,156565872:156565923:156566178:156566270:156567826:156567913,	156566179	156566270	156566196	156566196	Frame_Shift_Del	C	-	p.G136fs
LIHC	TCGA-DD-A39Y-01	BCAN	ENST00000329117.5,ENST00000496038.1	chr1	156627466:156627549:156627918:156628063:156628334:156628525,	156627919	156628063	156628056	156628056	Frame_Shift_Del	G	-	p.M810fs
LIHC	TCGA-DD-A39Y-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694105	156694105	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-DD-A39Y-01	MRPL24	ENST00000361531.2,ENST00000368211.4,ENST00000434558.1	chr1	156707321:156707326:156707437:156707568:156707822:156707926,	156707438	156707568	156707447	156707447	Frame_Shift_Del	T	-	p.T169fs
LIHC	TCGA-DD-A39Y-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708445	156708445	Frame_Shift_Del	G	-	p.H18fs
LIHC	TCGA-DD-A39Y-01	PEAR1	ENST00000292357.7,ENST00000455314.1	chr1	156871979:156872077:156873709:156873819:156874539:156874644,156863522:156863629:156873709:156873819:156874539:156874644,	156873710	156873819	156873757	156873757	Frame_Shift_Del	G	-	p.V13fs
LIHC	TCGA-DD-A39Y-01	PEAR1	ENST00000292357.7,ENST00000338302.3,ENST00000455314.1	chr1	156873709:156873819:156874539:156874644:156875115:156875216,	156874540	156874644	156874633	156874633	Frame_Shift_Del	C	-	p.C65fs
LIHC	TCGA-DD-A39Y-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2,ENST00000487682.1	chr1	156905721:156905850:156906607:156906797:156907040:156907288,	156906608	156906797	156906754	156906754	Frame_Shift_Del	C	-	p.G1495fs
LIHC	TCGA-DD-A39Y-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2,ENST00000487682.1	chr1	156911163:156911225:156911655:156911781:156912481:156912572,	156911656	156911781	156911698	156911698	Frame_Shift_Del	G	-	p.P1137fs
LIHC	TCGA-DD-A39Y-01	FCRL5	ENST00000368191.3,ENST00000361835.3,ENST00000368190.3,ENST00000356953.4,ENST00000368189.3	chr1	157508875:157509154:157512648:157512927:157514051:157514336,	157512649	157512927	157512790	157512790	Frame_Shift_Del	G	-	p.L328fs
LIHC	TCGA-DD-A39Y-01	FCRL5	ENST00000368191.3,ENST00000361835.3,ENST00000368190.3,ENST00000356953.4,ENST00000368189.3	chr1	157508875:157509154:157512648:157512927:157514051:157514336,	157512649	157512927	157512875	157512875	Frame_Shift_Del	A	-	p.F299fs
LIHC	TCGA-DD-A39Y-01	FCRL5	ENST00000361835.3,ENST00000368190.3,ENST00000368189.3	chr1	157516002:157516070:157516732:157516987:157519349:157519370,157514620:157514872:157516732:157516987:157519349:157519370,	157516733	157516987	157516739	157516739	Frame_Shift_Del	A	-	p.S102fs
LIHC	TCGA-DD-A39Y-01	FCRL4	ENST00000448509.2,ENST00000271532.1	chr1	157557065:157557350:157557654:157557909:157558993:157559041,	157557655	157557909	157557670	157557670	Frame_Shift_Del	T	-	p.I184fs
LIHC	TCGA-DD-A39Y-01	FCRL3	ENST00000468507.1,ENST00000477837.1,ENST00000473231.1,ENST00000368184.3,ENST00000480682.1,ENST00000492769.1,ENST00000494724.1,ENST00000485028.1,ENST00000368186.5	chr1	157650491:157650560:157650770:157650889:157653006:157653034,	157650771	157650889	157650800	157650800	Frame_Shift_Del	G	-	p.P643fs
LIHC	TCGA-DD-A39Y-01	FCRL3	ENST00000496769.1,ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157667448:157667709:157668173:157668419,157667005:157667214:157667448:157667709:157668173:157668419,	157667449	157667709	157667628	157667628	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A39Y-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157667628	157667628	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A39Y-01	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157736644:157736761:157737020:157737299:157738203:157738491,	157737021	157737299	157737142	157737142	Frame_Shift_Del	G	-	p.P347fs
LIHC	TCGA-DD-A39Y-01	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157736644:157736761:157737020:157737299:157738203:157738491,	157737021	157737299	157737255	157737255	Frame_Shift_Del	G	-	p.Q310fs
LIHC	TCGA-DD-A39Y-01	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157736644:157736761:157737020:157737299:157738203:157738491,	157737021	157737299	157737258	157737258	Frame_Shift_Del	C	-	p.A309fs
LIHC	TCGA-DD-A39Y-01	FCRL1	ENST00000368176.3,ENST00000358292.3,ENST00000491942.1,ENST00000368175.3	chr1	157772404:157772454:157773634:157773901:157776891:157776912,	157773635	157773901	157773790	157773790	Frame_Shift_Del	A	-	p.F55fs
LIHC	TCGA-DD-A39Y-01	PYHIN1	ENST00000392252.3,ENST00000368138.3,ENST00000368140.1,ENST00000392254.2	chr1	158908213:158908332:158908869:158909037:158911766:158912189,	158908870	158909037	158908875	158908875	Frame_Shift_Del	A	-	p.R139fs
LIHC	TCGA-DD-A39Y-01	CADM3	ENST00000416746.1,ENST00000368125.4,ENST00000368124.4	chr1	159162367:159162520:159163212:159163350:159163659:159163692,	159163213	159163350	159163261	159163261	Frame_Shift_Del	A	-	p.E144fs
LIHC	TCGA-DD-A39Y-01	FCRL6	ENST00000392235.3,ENST00000321935.6,ENST00000368106.3,ENST00000339348.5	chr1	159779883:159780006:159783278:159783344:159784010:159784082,	159783279	159783344	159783281	159783281	Frame_Shift_Del	C	-	p.P345fs
LIHC	TCGA-DD-A39Y-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898216	159898216	Frame_Shift_Del	C	-	p.A988fs
LIHC	TCGA-DD-A39Y-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898350	159898350	Frame_Shift_Del	G	-	p.P943fs
LIHC	TCGA-DD-A39Y-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898360	159898360	Frame_Shift_Del	C	-	p.D940fs
LIHC	TCGA-DD-A39Y-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898714	159898714	Frame_Shift_Del	C	-	p.D822fs
LIHC	TCGA-DD-A39Y-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912846	159912846	Frame_Shift_Del	G	-	p.L52fs
LIHC	TCGA-DD-A39Y-01	IGSF8	ENST00000314485.7,ENST00000368086.1	chr1	160062361:160062485:160062713:160063121:160063499:160063961,	160062714	160063121	160063025	160063025	Frame_Shift_Del	G	-	p.P334fs
LIHC	TCGA-DD-A39Y-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093106	160093106	Frame_Shift_Del	T	-	p.L94fs
LIHC	TCGA-DD-A39Y-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093111	160093111	Frame_Shift_Del	G	-	p.G97fs
LIHC	TCGA-DD-A39Y-01	VANGL2	ENST00000368061.2	chr1	160385851:160385972:160388791:160389399:160390200:160390337,	160388792	160389399	160388932	160388932	Frame_Shift_Del	G	-	p.A111fs
LIHC	TCGA-DD-A39Y-01	VANGL2	ENST00000368061.2	chr1	160389282:160389399:160390200:160390337:160390841:160390957,	160390201	160390337	160390228	160390228	Frame_Shift_Del	G	-	p.L276fs
LIHC	TCGA-DD-A39Y-01	SLAMF6	ENST00000368057.3	chr1	160460914:160461178:160465850:160466183:160492933:160493032,	160465851	160466183	160466101	160466101	Frame_Shift_Del	A	-	p.F44fs
LIHC	TCGA-DD-A39Y-01	ITLN1	ENST00000326245.3	chr1	160846328:160846606:160849100:160849204:160850377:160850498,	160849101	160849204	160849189	160849189	Frame_Shift_Del	C	-	p.G234fs
LIHC	TCGA-DD-A39Y-01	DEDD	ENST00000368005.1,ENST00000392188.1	chr1	161092140:161092313:161092774:161093011:161093628:161093718,	161092775	161093011	161092793	161092793	Frame_Shift_Del	C	-	p.A218fs
LIHC	TCGA-DD-A39Y-01	USP21	ENST00000368001.1,ENST00000368002.3,ENST00000289865.8	chr1	161133344:161133409:161133667:161133771:161133953:161134040,	161133668	161133771	161133740	161133740	Frame_Shift_Del	T	-	p.V396fs
LIHC	TCGA-DD-A39Y-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134345	161134345	Frame_Shift_Del	A	-	p.K443fs
LIHC	TCGA-DD-A39Y-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134708	161134708	Frame_Shift_Del	G	-	p.G490fs
LIHC	TCGA-DD-A39Y-01	B4GALT3	ENST00000319769.5,ENST00000493164.1	chr1	161144841:161145018:161145597:161145864:161146223:161146298,	161145598	161145864	161145762	161145762	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-DD-A39Y-01	B4GALT3	ENST00000367998.1,ENST00000496313.1,ENST00000487004.1	chr1	161144841:161145018:161145597:161145885:161146223:161146298,	161145598	161145885	161145762	161145762	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-DD-A39Y-01	NR1I3	ENST00000515621.1	chr1	161205636:161205767:161206319:161206388:161207830:161207880,	161206320	161206388	161206324	161206324	Frame_Shift_Del	C	-	p.C11fs
LIHC	TCGA-DD-A39Y-01	NR1I3	ENST00000367982.4,ENST00000502848.1,ENST00000367983.4,ENST00000502985.1,ENST00000511944.1,ENST00000428574.2,ENST00000367980.2,ENST00000505005.1,ENST00000515452.1,ENST00000442691.2,ENST00000367984.4,ENST00000367985.3	chr1	161205636:161205767:161206248:161206388:161207830:161207880,	161206249	161206388	161206324	161206324	Frame_Shift_Del	C	-	p.C11fs
LIHC	TCGA-DD-A39Y-01	FCRLA	ENST00000367957.2	chr1	161680997:161681264:161681723:161682008:161682874:161683242,161680549:161680702:161681723:161682008:161682874:161683242,161677084:161677133:161681723:161682008:161682874:161683242,	161681724	161682008	161681832	161681832	Frame_Shift_Del	C	-	p.A226fs
LIHC	TCGA-DD-A39Y-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681832	161681832	Frame_Shift_Del	C	-	p.A226fs
LIHC	TCGA-DD-A39Y-01	ATF6	ENST00000367942.3	chr1	161761913:161762117:161771841:161772062:161789422:161789608,	161771842	161772062	161771931	161771931	Frame_Shift_Del	G	-	p.G261fs
LIHC	TCGA-DD-A39Y-01	SH2D1B	ENST00000367929.2	chr1	162365372:162367105:162368712:162368877:162372528:162372592,	162368713	162368877	162368800	162368800	Frame_Shift_Del	C	-	p.G92fs
LIHC	TCGA-DD-A39Y-01	DDR2	ENST00000367921.3,ENST00000367922.3	chr1	162741813:162742037:162743258:162743386:162745441:162745633,	162743259	162743386	162743339	162743339	Frame_Shift_Del	C	-	p.V603fs
LIHC	TCGA-DD-A39Y-01	ALDH9A1	ENST00000471457.1	chr1	165652217:165652347:165664488:165664634:165667614:165667750,	165664489	165664634	165664554	165664554	Frame_Shift_Del	T	-	p.I88fs
LIHC	TCGA-DD-A39Y-01	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000392129.6,ENST00000580248.1	chr1	165697322:165697358:165712403:165712548:165721338:165721406,	165712404	165712548	165712505	165712505	Frame_Shift_Del	A	-	p.S174fs
LIHC	TCGA-DD-A39Y-01	TMCO1	ENST00000367881.5,ENST00000464650.1,ENST00000392129.6,ENST00000580248.1,ENST00000481278.1	chr1	165723464:165723511:165728761:165728821:165737428:165737481,	165728762	165728821	165728770	165728770	Frame_Shift_Del	T	-	p.K119fs
LIHC	TCGA-DD-A39Y-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166818499	166818499	Frame_Shift_Del	A	-	p.E228fs
LIHC	TCGA-DD-A39Y-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166818522	166818522	Frame_Shift_Del	A	-	p.K236fs
LIHC	TCGA-DD-A39Y-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166818562	166818562	Frame_Shift_Del	G	-	p.R249fs
LIHC	TCGA-DD-A39Y-01	GPA33	ENST00000367868.3	chr1	167038158:167038375:167042621:167042776:167059481:167059563,	167042622	167042776	167042699	167042699	Frame_Shift_Del	G	-	p.L41fs
LIHC	TCGA-DD-A39Y-01	CREG1	ENST00000370509.4	chr1	167510249:167511538:167515337:167515522:167517238:167517358,	167515338	167515522	167515375	167515375	Frame_Shift_Del	T	-	p.I208fs
LIHC	TCGA-DD-A39Y-01	RCSD1	ENST00000537350.1,ENST00000367854.3	chr1	167659285:167659357:167663335:167663539:167666335:167666524,	167663336	167663539	167663372	167663372	Frame_Shift_Del	G	-	p.G103fs
LIHC	TCGA-DD-A39Y-01	RCSD1	ENST00000537350.1,ENST00000367854.3	chr1	167659285:167659357:167663335:167663539:167666335:167666524,	167663336	167663539	167663436	167663436	Frame_Shift_Del	C	-	p.T124fs
LIHC	TCGA-DD-A39Y-01	RCSD1	ENST00000537350.1,ENST00000367854.3	chr1	167659285:167659357:167663335:167663539:167666335:167666524,	167663336	167663539	167663473	167663473	Frame_Shift_Del	G	-	p.E136fs
LIHC	TCGA-DD-A39Y-01	MPZL1	ENST00000448405.1	chr1	167734819:167734986:167742472:167742605:167745300:167745403,	167742473	167742605	167742580	167742580	Frame_Shift_Del	A	-	p.K194fs
LIHC	TCGA-DD-A39Y-01	ADCY10	ENST00000367848.1,ENST00000485964.1,ENST00000545172.1,ENST00000367851.4	chr1	167778914:167779076:167779961:167780150:167787309:167787505,	167779962	167780150	167780125	167780125	Frame_Shift_Del	T	-	p.N1411fs
LIHC	TCGA-DD-A39Y-01	ADCY10	ENST00000367848.1,ENST00000545172.1,ENST00000367851.4	chr1	167830108:167830301:167839494:167839648:167844368:167844424,	167839495	167839648	167839544	167839544	Frame_Shift_Del	T	-	p.S431fs
LIHC	TCGA-DD-A39Y-01	MPC2	ENST00000271373.4,ENST00000367846.4	chr1	167887305:167887597:167889216:167889328:167889784:167889869,	167889217	167889328	167889286	167889286	Frame_Shift_Del	T	-	p.N93fs
LIHC	TCGA-DD-A39Y-01	TIPRL	ENST00000367833.2	chr1	168154016:168154116:168160606:168160738:168165784:168165880,	168160607	168160738	168160686	168160686	Frame_Shift_Del	T	-	p.L155fs
LIHC	TCGA-DD-A39Y-01	TIPRL	ENST00000367833.2	chr1	168160606:168160738:168165784:168165880:168168156:168168219,	168165785	168165880	168165839	168165839	Frame_Shift_Del	G	-	p.G191fs
LIHC	TCGA-DD-A39Y-01	TBX19	ENST00000367821.3,ENST00000441464.1	chr1	168269659:168269721:168274245:168274434:168277979:168278115,	168274246	168274434	168274335	168274335	Frame_Shift_Del	C	-	p.P273fs
LIHC	TCGA-DD-A39Y-01	NME7	ENST00000525440.1	chr1	169101774:169102055:169138684:169138792:169199955:169199970,169101768:169102055:169138684:169138792:169159880:169159948,	169138685	169138792	169138732	169138732	Frame_Shift_Del	G	-	p.Q351fs
LIHC	TCGA-DD-A39Y-01	NME7	ENST00000493481.1	chr1	169101774:169102055:169138670:169138792:169199955:169199970,	169138671	169138792	169138732	169138732	Frame_Shift_Del	G	-	p.Q351fs
LIHC	TCGA-DD-A39Y-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351458	169351458	Frame_Shift_Del	A	-	p.Q319fs
LIHC	TCGA-DD-A39Y-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169495138:169495255:169497152:169497332:169498845:169499056,	169497153	169497332	169497220	169497220	Frame_Shift_Del	A	-	p.F1849fs
LIHC	TCGA-DD-A39Y-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511233	169511233	Frame_Shift_Del	T	-	p.K1039fs
LIHC	TCGA-DD-A39Y-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169512240	169512240	Frame_Shift_Del	A	-	p.F701fs
LIHC	TCGA-DD-A39Y-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169512307	169512307	Frame_Shift_Del	T	-	p.K679fs
LIHC	TCGA-DD-A39Y-01	SELP	ENST00000426706.2,ENST00000263686.6	chr1	169578741:169578927:169580729:169580915:169581454:169581640,	169580730	169580915	169580887	169580887	Frame_Shift_Del	G	-	p.P330fs
LIHC	TCGA-DD-A39Y-01	C1orf112	ENST00000496973.1,ENST00000498289.1,ENST00000472795.1,ENST00000359326.4,ENST00000286031.6,ENST00000456684.1	chr1	169768059:169768099:169770023:169770112:169771761:169771866,	169770024	169770112	169770050	169770050	Frame_Shift_Del	T	-	p.F2fs
LIHC	TCGA-DD-A39Y-01	SCYL3	ENST00000367771.6,ENST00000423670.1	chr1	169823651:169824105:169828181:169828353:169831753:169831938,	169828182	169828353	169828343	169828343	Frame_Shift_Del	C	-	p.G384fs
LIHC	TCGA-DD-A39Y-01	FMO3	ENST00000367755.4,ENST00000392085.2,ENST00000542847.1,ENST00000538429.1	chr1	171079938:171080138:171083146:171083502:171085347:171085420,	171083147	171083502	171083324	171083324	Frame_Shift_Del	C	-	p.Y335fs
LIHC	TCGA-DD-A39Y-01	FMO3	ENST00000367755.4,ENST00000392085.2,ENST00000542847.1,ENST00000538429.1	chr1	171079938:171080138:171083146:171083502:171085347:171085420,	171083147	171083502	171083371	171083371	Frame_Shift_Del	T	-	p.I351fs
LIHC	TCGA-DD-A39Y-01	FMO6P	ENST00000236166.3	chr1	171112309:171112498:171115495:171115658:171116764:171116907,	171115496	171115658	171115540	171115540	Frame_Shift_Del	G	-	p.T122fs
LIHC	TCGA-DD-A39Y-01	PRRC2C	ENST00000338920.4,ENST00000367742.3,ENST00000392078.3	chr1	171537385:171537478:171540458:171540560:171544065:171544267,	171540459	171540560	171540542	171540542	Frame_Shift_Del	T	-	p.T2245fs
LIHC	TCGA-DD-A39Y-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171544065:171544267:171546572:171546776:171548492:171548605,	171546573	171546776	171546720	171546720	Frame_Shift_Del	C	-	p.S2368fs
LIHC	TCGA-DD-A39Y-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173803610:173803657:173806077:173806184:173807327:173807397,	173806078	173806184	173806090	173806090	Frame_Shift_Del	T	-	p.F226fs
LIHC	TCGA-DD-A39Y-01	RC3H1	ENST00000258349.4,ENST00000367696.2,ENST00000367694.2	chr1	173933110:173933325:173933976:173934258:173939642:173939755,	173933977	173934258	173934020	173934020	Frame_Shift_Del	T	-	p.I525fs
LIHC	TCGA-DD-A39Y-01	RABGAP1L	ENST00000347255.2,ENST00000251507.4,ENST00000325589.5,ENST00000367687.1	chr1	174721450:174721492:174780969:174781098:174926593:174926686,	174780970	174781098	174780999	174780999	Frame_Shift_Del	T	-	p.D66fs
LIHC	TCGA-DD-A39Y-01	TNR	ENST00000422274.2	chr1	175362915:175363031:175365679:175365943:175372275:175372752,175362915:175363031:175365679:175365943:175375351:175375500,	175365680	175365943	175365823	175365823	Frame_Shift_Del	C	-	p.G366fs
LIHC	TCGA-DD-A39Y-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372615	175372615	Frame_Shift_Del	C	-	p.V213fs
LIHC	TCGA-DD-A39Y-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525710	176525710	Frame_Shift_Del	G	-	p.V84fs
LIHC	TCGA-DD-A39Y-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525780	176525780	Frame_Shift_Del	C	-	p.P109fs
LIHC	TCGA-DD-A39Y-01	SEC16B	ENST00000327037.4,ENST00000528461.1,ENST00000308284.6	chr1	177911034:177911175:177913695:177913801:177915554:177915666,	177913696	177913801	177913717	177913717	Frame_Shift_Del	T	-	p.K620fs
LIHC	TCGA-DD-A39Y-01	SEC16B	ENST00000327037.4,ENST00000528461.1,ENST00000308284.6	chr1	177911034:177911175:177913695:177913801:177915554:177915666,	177913696	177913801	177913752	177913752	Frame_Shift_Del	T	-	p.I609fs
LIHC	TCGA-DD-A39Y-01	SEC16B	ENST00000464631.2,ENST00000528461.1,ENST00000308284.6	chr1	177930724:177930869:177933305:177933414:177934181:177934302,	177933306	177933414	177933310	177933310	Frame_Shift_Del	T	-	p.N213fs
LIHC	TCGA-DD-A39Y-01	RASAL2	ENST00000367649.3	chr1	178421571:178421787:178423581:178423783:178425855:178426034,	178423582	178423783	178423703	178423703	Frame_Shift_Del	T	-	p.F693fs
LIHC	TCGA-DD-A39Y-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178777179:178777263:178780449:178780539:178790746:178790839,	178780450	178780539	178780487	178780487	Frame_Shift_Del	A	-	p.Q112fs
LIHC	TCGA-DD-A39Y-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178777179:178777263:178780449:178780539:178790746:178790839,	178780450	178780539	178780494	178780494	Frame_Shift_Del	A	-	p.L114fs
LIHC	TCGA-DD-A39Y-01	ANGPTL1	ENST00000234816.2,ENST00000367629.1	chr1	178821817:178822088:178822728:178822922:178834088:178834937,	178822729	178822922	178822796	178822796	Frame_Shift_Del	C	-	p.G317fs
LIHC	TCGA-DD-A39Y-01	FAM20B	ENST00000263733.4	chr1	178995030:178995233:179012849:179013359:179019413:179019451,	179012850	179013359	179013029	179013029	Frame_Shift_Del	T	-	p.I16fs
LIHC	TCGA-DD-A39Y-01	FAM20B	ENST00000263733.4	chr1	178995030:178995233:179012849:179013359:179019413:179019451,	179012850	179013359	179013265	179013265	Frame_Shift_Del	A	-	p.K95fs
LIHC	TCGA-DD-A39Y-01	TOR3A	ENST00000367627.3,ENST00000352445.6,ENST00000483887.1	chr1	179052074:179052188:179054762:179055028:179057045:179057218,	179054763	179055028	179054862	179054862	Frame_Shift_Del	A	-	p.E158fs
LIHC	TCGA-DD-A39Y-01	ABL2	ENST00000392043.3,ENST00000509520.1,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3,ENST00000504324.1	chr1	179090729:179091002:179095511:179095807:179100445:179100616,	179095512	179095807	179095689	179095689	Frame_Shift_Del	T	-	p.K170fs
LIHC	TCGA-DD-A39Y-01	SOAT1	ENST00000367619.3,ENST00000535686.1,ENST00000539888.1,ENST00000540564.1	chr1	179319430:179319566:179320451:179320597:179322719:179322942,	179320452	179320597	179320592	179320592	Frame_Shift_Del	A	-	p.K531fs
LIHC	TCGA-DD-A39Y-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414188	179414188	Frame_Shift_Del	G	-	p.Q549fs
LIHC	TCGA-DD-A39Y-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414242	179414242	Frame_Shift_Del	G	-	p.E567fs
LIHC	TCGA-DD-A39Y-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179604801:179605022:179608973:179609186:179609513:179609580,	179608974	179609186	179609025	179609025	Frame_Shift_Del	T	-	p.C524fs
LIHC	TCGA-DD-A39Y-01	TDRD5	ENST00000444136.1,ENST00000417329.1	chr1	179621173:179621332:179623335:179623497:179631238:179631421,	179623336	179623497	179623471	179623471	Frame_Shift_Del	C	-	p.P766fs
LIHC	TCGA-DD-A39Y-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179631238:179631421:179632482:179632626:179638328:179638539,	179632483	179632626	179632491	179632491	Frame_Shift_Del	T	-	p.C838fs
LIHC	TCGA-DD-A39Y-01	TOR1AIP1	ENST00000474875.1,ENST00000529091.1,ENST00000435319.4,ENST00000527391.1,ENST00000606911.2,ENST00000524653.1	chr1	179853826:179853904:179858447:179858504:179870436:179870522,179853826:179853904:179858447:179858504:179869260:179869302,	179858448	179858504	179858480	179858480	Frame_Shift_Del	C	-	p.P197fs
LIHC	TCGA-DD-A39Y-01	TOR1AIP1	ENST00000528443.2,ENST00000531726.1,ENST00000271583.3	chr1	179853826:179853904:179858444:179858504:179869260:179869302,	179858445	179858504	179858480	179858480	Frame_Shift_Del	C	-	p.P197fs
LIHC	TCGA-DD-A39Y-01	CEP350	ENST00000367607.3	chr1	179956377:179956421:179961196:179961356:179965687:179966098,179959641:179959756:179961196:179961356:179965687:179966098,	179961197	179961356	179961313	179961313	Frame_Shift_Del	A	-	p.K118fs
LIHC	TCGA-DD-A39Y-01	XPR1	ENST00000367590.4,ENST00000367589.3	chr1	180832899:180833010:180842938:180843078:180849211:180849433,	180842939	180843078	180843060	180843060	Frame_Shift_Del	C	-	p.A597fs
LIHC	TCGA-DD-A39Y-01	STX6	ENST00000258301.5	chr1	180959119:180959245:180962498:180962561:180991774:180992005,180959119:180959245:180962498:180962561:180971741:180971836,	180962499	180962561	180962506	180962506	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A39Y-01	CACNA1E	ENST00000526775.1,ENST00000357570.5,ENST00000367573.2,ENST00000367567.4,ENST00000358338.5,ENST00000367570.1,ENST00000360108.3	chr1	181752814:181752920:181753796:181753904:181754453:181754554,	181753797	181753904	181753833	181753833	Frame_Shift_Del	A	-	p.Q1817fs
LIHC	TCGA-DD-A39Y-01	NPL	ENST00000367554.3	chr1	182763490:182763574:182772832:182772906:182775279:182775367,182758910:182758940:182772832:182772906:182775279:182775367,	182772833	182772906	182772843	182772843	Frame_Shift_Del	T	-	p.F27fs
LIHC	TCGA-DD-A39Y-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000474446.1	chr1	182847155:182847308:182848384:182848545:182849631:182849743,	182848385	182848545	182848503	182848503	Frame_Shift_Del	C	-	p.P825fs
LIHC	TCGA-DD-A39Y-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183196652:183196832:183197508:183197754:183200095:183200238,	183197509	183197754	183197625	183197625	Frame_Shift_Del	G	-	p.G529fs
LIHC	TCGA-DD-A39Y-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000419169.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183506279:183506350:183507514:183507575:183510118:183510238,	183507515	183507575	183507550	183507550	Frame_Shift_Del	T	-	p.F453fs
LIHC	TCGA-DD-A39Y-01	SMG7	ENST00000508461.1,ENST00000507469.1,ENST00000367537.3	chr1	183515100:183515472:183516237:183516387:183518342:183518423,	183516238	183516387	183516351	183516351	Frame_Shift_Del	G	-	p.L935fs
LIHC	TCGA-DD-A39Y-01	NCF2	ENST00000420553.1,ENST00000367535.3,ENST00000419402.1,ENST00000418089.1,ENST00000413720.1,ENST00000367536.1	chr1	183532568:183532720:183533139:183533165:183534838:183534914,	183533140	183533165	183533152	183533152	Frame_Shift_Del	T	-	p.K293fs
LIHC	TCGA-DD-A39Y-01	NCF2	ENST00000420553.1	chr1	183533139:183533165:183534838:183534914:183538276:183538320,	183534839	183534914	183534851	183534851	Frame_Shift_Del	G	-	p.Q285fs
LIHC	TCGA-DD-A39Y-01	NCF2	ENST00000367535.3,ENST00000418089.1,ENST00000413720.1,ENST00000367536.1	chr1	183536338:183536480:183538276:183538320:183539914:183539974,	183538277	183538320	183538289	183538289	Frame_Shift_Del	G	-	p.P189fs
LIHC	TCGA-DD-A39Y-01	RGL1	ENST00000360851.3,ENST00000304685.4,ENST00000539189.1	chr1	183711260:183711424:183816699:183816908:183835129:183835207,183775508:183775619:183816699:183816908:183835129:183835207,	183816700	183816908	183816817	183816817	Frame_Shift_Del	G	-	p.G121fs
LIHC	TCGA-DD-A39Y-01	COLGALT2	ENST00000361927.4,ENST00000546159.1	chr1	183923895:183923972:183933034:183933154:183938402:183938607,	183933035	183933154	183933092	183933092	Frame_Shift_Del	G	-	p.H299fs
LIHC	TCGA-DD-A39Y-01	TSEN15	ENST00000533373.1,ENST00000361641.1	chr1	184023494:184023569:184023861:184023997:184041960:184042114,184023494:184023569:184023861:184023997:184041290:184041328,	184023862	184023997	184023864	184023864	Frame_Shift_Del	A	-	p.K74fs
LIHC	TCGA-DD-A39Y-01	TSEN15	ENST00000533373.1,ENST00000361641.1	chr1	184023494:184023569:184023861:184023997:184041960:184042114,184023494:184023569:184023861:184023997:184041290:184041328,	184023862	184023997	184023967	184023967	Frame_Shift_Del	C	-	p.T108fs
LIHC	TCGA-DD-A39Y-01	C1orf21	ENST00000235307.6	chr1	184446598:184446737:184476721:184476816:184559872:184559949,	184476722	184476816	184476769	184476769	Frame_Shift_Del	G	-	p.G48fs
LIHC	TCGA-DD-A39Y-01	FAM129A	ENST00000367511.3,ENST00000487074.1	chr1	184767212:184767324:184772718:184772826:184775079:184775119,	184772719	184772826	184772785	184772785	Frame_Shift_Del	A	-	p.F496fs
LIHC	TCGA-DD-A39Y-01	FAM129A	ENST00000367511.3,ENST00000487074.1	chr1	184775079:184775190:184777207:184777369:184787771:184787959,	184777208	184777369	184777252	184777252	Frame_Shift_Del	G	-	p.H431fs
LIHC	TCGA-DD-A39Y-01	FAM129A	ENST00000367511.3	chr1	184800980:184801096:184853766:184853934:184859241:184859319,	184853767	184853934	184853883	184853883	Frame_Shift_Del	A	-	p.F162fs
LIHC	TCGA-DD-A39Y-01	FAM129A	ENST00000367511.3	chr1	184859241:184859356:184863208:184863340:184868311:184868442,	184863209	184863340	184863289	184863289	Frame_Shift_Del	A	-	p.S80fs
LIHC	TCGA-DD-A39Y-01	TRMT1L	ENST00000367506.5,ENST00000367504.3	chr1	185106737:185106928:185108498:185108711:185109104:185109354,	185108499	185108711	185108581	185108581	Frame_Shift_Del	G	-	p.R259fs
LIHC	TCGA-DD-A39Y-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185183638:185183787:185190980:185191168:185200708:185200840,	185190981	185191168	185191102	185191102	Frame_Shift_Del	A	-	p.Q748fs
LIHC	TCGA-DD-A39Y-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186062617:186062801:186063407:186063505:186064374:186064653,	186063408	186063505	186063469	186063469	Frame_Shift_Del	G	-	p.G3420fs
LIHC	TCGA-DD-A39Y-01	HMCN1	ENST00000271588.4	chr1	186143645:186143774:186147547:186147898:186151299:186151419,	186147548	186147898	186147602	186147602	Frame_Shift_Del	C	-	p.T5333fs
LIHC	TCGA-DD-A39Y-01	HMCN1	ENST00000271588.4,ENST00000367492.2,ENST00000414277.1	chr1	186151299:186151419:186157014:186157141:186158643:186158797,	186157015	186157141	186157053	186157053	Frame_Shift_Del	C	-	p.P5485fs
LIHC	TCGA-DD-A39Y-01	PRG4	ENST00000367486.3,ENST00000367485.4,ENST00000445192.2	chr1	186265977:186266083:186269222:186269345:186270723:186270843,	186269223	186269345	186269249	186269249	Frame_Shift_Del	G	-	p.G35fs
LIHC	TCGA-DD-A39Y-01	PRG4	ENST00000367483.4,ENST00000445192.2,ENST00000367484.3	chr1	186270723:186270843:186273925:186274054:186275449:186275610,186273239:186273389:186273925:186274054:186275449:186275610,	186273926	186274054	186274012	186274012	Frame_Shift_Del	A	-	p.K186fs
LIHC	TCGA-DD-A39Y-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186275858	186275858	Frame_Shift_Del	A	-	p.E336fs
LIHC	TCGA-DD-A39Y-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186276817	186276817	Frame_Shift_Del	C	-	p.P656fs
LIHC	TCGA-DD-A39Y-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277962	186277962	Frame_Shift_Del	A	-	p.P1037fs
LIHC	TCGA-DD-A39Y-01	TPR	ENST00000367478.4,ENST00000467810.1	chr1	186287636:186287735:186287864:186287960:186289443:186289550,	186287865	186287960	186287943	186287943	Frame_Shift_Del	T	-	p.T2196fs
LIHC	TCGA-DD-A39Y-01	UCHL5	ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998661:192998787:193018875:193018981:193020883:193020947,	193018876	193018981	193018885	193018885	Frame_Shift_Del	A	-	p.F79fs
LIHC	TCGA-DD-A39Y-01	CDC73	ENST00000367435.3	chr1	193181519:193181607:193202122:193202284:193205385:193205486,	193202123	193202284	193202211	193202211	Frame_Shift_Del	G	-	p.G416fs
LIHC	TCGA-DD-A39Y-01	KCNT2	ENST00000610076.1	chr1	196309618:196309700:196311208:196311379:196342269:196342378,	196311209	196311379	196311262	196311262	Frame_Shift_Del	A	-	p.F500fs
LIHC	TCGA-DD-A39Y-01	KCNT2	ENST00000294725.9,ENST00000367433.5,ENST00000451324.2,ENST00000498426.1	chr1	196309618:196309700:196311208:196311358:196342269:196342378,	196311209	196311358	196311262	196311262	Frame_Shift_Del	A	-	p.F500fs
LIHC	TCGA-DD-A39Y-01	CFH	ENST00000439155.2,ENST00000367429.4,ENST00000359637.2	chr1	196642107:196642293:196642986:196643092:196645118:196645195,	196642987	196643092	196643045	196643045	Frame_Shift_Del	A	-	p.G101fs
LIHC	TCGA-DD-A39Y-01	CFH	ENST00000439155.2,ENST00000367429.4	chr1	196645118:196645195:196646605:196646797:196648752:196648923,	196646606	196646797	196646766	196646766	Frame_Shift_Del	T	-	p.G196fs
LIHC	TCGA-DD-A39Y-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070174	197070174	Frame_Shift_Del	A	-	p.L2736fs
LIHC	TCGA-DD-A39Y-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071496	197071496	Frame_Shift_Del	T	-	p.K2295fs
LIHC	TCGA-DD-A39Y-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071631	197071631	Frame_Shift_Del	A	-	p.F2250fs
LIHC	TCGA-DD-A39Y-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071651	197071651	Frame_Shift_Del	T	-	p.I2244fs
LIHC	TCGA-DD-A39Y-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072266	197072266	Frame_Shift_Del	T	-	p.R2039fs
LIHC	TCGA-DD-A39Y-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073354	197073354	Frame_Shift_Del	A	-	p.L1676fs
LIHC	TCGA-DD-A39Y-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197094175:197094321:197097619:197097795:197098316:197098447,	197097620	197097795	197097768	197097768	Frame_Shift_Del	A	-	p.S930fs
LIHC	TCGA-DD-A39Y-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390178	197390178	Frame_Shift_Del	A	-	p.Q407fs
LIHC	TCGA-DD-A39Y-01	NEK7	ENST00000367385.4,ENST00000493790.1,ENST00000538004.1	chr1	198262074:198262169:198266256:198266370:198288541:198288652,	198266257	198266370	198266351	198266351	Frame_Shift_Del	C	-	p.S260fs
LIHC	TCGA-DD-A39Y-01	NR5A2	ENST00000367357.3,ENST00000367362.3,ENST00000236914.3,ENST00000544748.1	chr1	200012937:200013020:200014570:200014712:200017299:200017946,	200014571	200014712	200014574	200014574	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-DD-A39Y-01	DDX59	ENST00000433235.1	chr1	200618201:200618354:200619552:200619804:200628154:200628244,200618201:200618354:200619552:200619804:200623568:200623678,	200619553	200619804	200619627	200619627	Frame_Shift_Del	A	-	p.C414fs
LIHC	TCGA-DD-A39Y-01	CACNA1S	ENST00000362061.3	chr1	201022586:201022715:201023632:201023689:201027535:201027619,	201023633	201023689	201023667	201023667	Frame_Shift_Del	C	-	p.G1211fs
LIHC	TCGA-DD-A39Y-01	IGFN1	ENST00000437879.2,ENST00000451870.2,ENST00000295591.8,ENST00000335211.4	chr1	201172865:201173034:201174209:201174482:201175210:201175262,	201174210	201174482	201174350	201174350	Frame_Shift_Del	A	-	p.K353fs
LIHC	TCGA-DD-A39Y-01	IGFN1	ENST00000437879.2,ENST00000451870.2,ENST00000295591.8,ENST00000335211.4	chr1	201172865:201173034:201174209:201174482:201175210:201175262,	201174210	201174482	201174465	201174465	Frame_Shift_Del	C	-	p.A391fs
LIHC	TCGA-DD-A39Y-01	IGFN1	ENST00000437879.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201187732:201187786:201190571:201190874:201191866:201191955,	201190572	201190874	201190574	201190574	Frame_Shift_Del	C	-	p.P3302fs
LIHC	TCGA-DD-A39Y-01	IGFN1	ENST00000295591.8,ENST00000473483.1	chr1	201190571:201190874:201191866:201191955:201193806:201194002,201190571:201190874:201191866:201191955:201194951:201195251,	201191867	201191955	201191878	201191878	Frame_Shift_Del	T	-	p.F3405fs
LIHC	TCGA-DD-A39Y-01	IGFN1	ENST00000437879.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201194951:201195251:201196009:201196336:201197513:201197776,	201196010	201196336	201196150	201196150	Frame_Shift_Del	C	-	p.P3643fs
LIHC	TCGA-DD-A39Y-01	CSRP1	ENST00000530120.1,ENST00000533188.1	chr1	201458000:201458112:201459303:201459472:201465319:201465389,201458000:201458112:201459303:201459472:201476197:201476231,	201459304	201459472	201459329	201459329	Frame_Shift_Del	C	-	p.E86fs
LIHC	TCGA-DD-A39Y-01	CSRP1	ENST00000367306.1,ENST00000340006.2,ENST00000471596.1,ENST00000527573.1,ENST00000458271.2,ENST00000531916.1	chr1	201459458:201459472:201465319:201465432:201476197:201476231,	201465320	201465432	201465398	201465398	Frame_Shift_Del	C	-	p.V12fs
LIHC	TCGA-DD-A39Y-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618428	201618428	Frame_Shift_Del	A	-	p.Q211fs
LIHC	TCGA-DD-A39Y-01	TIMM17A	ENST00000484647.1,ENST00000478378.1	chr1	201924637:201924680:201926408:201926508:201926638:201926702,	201926409	201926508	201926443	201926443	Frame_Shift_Del	T	-	p.F21fs
LIHC	TCGA-DD-A39Y-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981471:201981564:201981767:201981887:201982074:201982164,	201981768	201981887	201981862	201981862	Frame_Shift_Del	T	-	p.P191fs
LIHC	TCGA-DD-A39Y-01	PTPN7	ENST00000435759.2	chr1	202126866:202126951:202127245:202127448:202128408:202128469,	202127246	202127448	202127350	202127350	Frame_Shift_Del	G	-	p.R173fs
LIHC	TCGA-DD-A39Y-01	PTPN7	ENST00000308986.5,ENST00000477554.1,ENST00000476061.1,ENST00000486116.1,ENST00000309017.3,ENST00000464870.1,ENST00000495688.1	chr1	202126866:202126951:202127245:202127429:202128408:202128469,	202127246	202127429	202127350	202127350	Frame_Shift_Del	G	-	p.R173fs
LIHC	TCGA-DD-A39Y-01	PTPN7	ENST00000496197.1	chr1	202126866:202126951:202127245:202127376:202128408:202128469,	202127246	202127376	202127350	202127350	Frame_Shift_Del	G	-	p.R173fs
LIHC	TCGA-DD-A39Y-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128510	202128510	Frame_Shift_Del	C	-	p.G112fs
LIHC	TCGA-DD-A39Y-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128510	202128510	Frame_Shift_Del	C	-	p.G112fs
LIHC	TCGA-DD-A39Y-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128510	202128510	Frame_Shift_Del	C	-	p.G112fs
LIHC	TCGA-DD-A39Y-01	KDM5B	ENST00000367265.3,ENST00000235790.4	chr1	202733176:202733273:202736053:202736188:202742245:202742412,	202736054	202736188	202736080	202736080	Frame_Shift_Del	G	-	p.R230fs
LIHC	TCGA-DD-A39Y-01	KLHL12	ENST00000367258.1,ENST00000435533.3,ENST00000367261.3	chr1	202878137:202878252:202880181:202880331:202887298:202887516,	202880182	202880331	202880304	202880304	Frame_Shift_Del	C	-	p.A199fs
LIHC	TCGA-DD-A39Y-01	ADIPOR1	ENST00000436244.1,ENST00000340990.5,ENST00000417068.1	chr1	202912891:202913073:202914110:202914297:202915566:202915738,	202914111	202914297	202914276	202914276	Frame_Shift_Del	A	-	p.L151fs
LIHC	TCGA-DD-A39Y-01	ADIPOR1	ENST00000367254.3,ENST00000436244.1,ENST00000426229.1,ENST00000340990.5,ENST00000417068.1	chr1	202915566:202915738:202917431:202917548:202920057:202920292,	202917432	202917548	202917494	202917494	Frame_Shift_Del	C	-	p.V66fs
LIHC	TCGA-DD-A39Y-01	TMEM183A	ENST00000468449.1,ENST00000543891.1,ENST00000367242.3	chr1	202977867:202977938:202984016:202984176:202985087:202985222,	202984017	202984176	202984116	202984116	Frame_Shift_Del	T	-	p.I156fs
LIHC	TCGA-DD-A39Y-01	CHI3L1	ENST00000404436.2	chr1	203148674:203148713:203148888:203149005:203149597:203149780,203148674:203148713:203148888:203149005:203150289:203150413,	203148889	203149005	203148894	203148894	Frame_Shift_Del	T	-	p.S336fs
LIHC	TCGA-DD-A39Y-01	CHI3L1	ENST00000255409.3	chr1	203150327:203150413:203151858:203151980:203152768:203152919,	203151859	203151980	203151937	203151937	Frame_Shift_Del	T	-	p.K170fs
LIHC	TCGA-DD-A39Y-01	CHI3L1	ENST00000255409.3	chr1	203151858:203151980:203152768:203152919:203153703:203153760,	203152769	203152919	203152801	203152801	Frame_Shift_Del	T	-	p.R145fs
LIHC	TCGA-DD-A39Y-01	CHIT1	ENST00000255427.3,ENST00000484834.1,ENST00000367229.1,ENST00000535569.1,ENST00000503786.1,ENST00000491855.1	chr1	203188409:203188457:203188791:203188977:203191329:203191438,	203188792	203188977	203188878	203188878	Frame_Shift_Del	A	-	p.S277fs
LIHC	TCGA-DD-A39Y-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667346	203667346	Frame_Shift_Del	C	-	p.I85fs
LIHC	TCGA-DD-A39Y-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816653	203816653	Frame_Shift_Del	A	-	p.K462fs
LIHC	TCGA-DD-A39Y-01	SOX13	ENST00000367204.1	chr1	204042731:204042839:204082042:204082262:204083448:204083560,	204082043	204082262	204082223	204082223	Frame_Shift_Del	C	-	p.D60fs
LIHC	TCGA-DD-A39Y-01	ETNK2	ENST00000367202.4	chr1	204110442:204110585:204118830:204119090:204120722:204121022,204115769:204115892:204118830:204119090:204120722:204121022,	204118831	204119090	204118926	204118926	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-DD-A39Y-01	ETNK2	ENST00000367202.4	chr1	204110442:204110585:204118830:204119090:204120722:204121022,204115769:204115892:204118830:204119090:204120722:204121022,	204118831	204119090	204119003	204119003	Frame_Shift_Del	C	-	p.E88fs
LIHC	TCGA-DD-A39Y-01	REN	ENST00000367195.2,ENST00000272190.8	chr1	204123946:204124305:204124947:204125046:204125305:204125367,	204124948	204125046	204124984	204124984	Frame_Shift_Del	T	-	p.K338fs
LIHC	TCGA-DD-A39Y-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204411653:204411761:204412544:204412725:204413195:204413290,	204412545	204412725	204412580	204412580	Frame_Shift_Del	G	-	p.Q1006fs
LIHC	TCGA-DD-A39Y-01	MDM4	ENST00000391947.2,ENST00000454264.2,ENST00000463049.1,ENST00000507825.2,ENST00000367182.3,ENST00000470797.1,ENST00000470908.1,ENST00000367180.1	chr1	204495487:204495562:204499811:204499945:204501318:204501374,	204499812	204499945	204499913	204499913	Frame_Shift_Del	G	-	p.L85fs
LIHC	TCGA-DD-A39Y-01	MDM4	ENST00000454264.2	chr1	204507348:204507436:204511911:204512072:204515924:204515960,	204511912	204512072	204511927	204511927	Frame_Shift_Del	A	-	p.E176fs
LIHC	TCGA-DD-A39Y-01	MDM4	ENST00000454264.2	chr1	204507348:204507436:204511911:204512072:204515924:204515960,	204511912	204512072	204512004	204512004	Frame_Shift_Del	T	-	p.F202fs
LIHC	TCGA-DD-A39Y-01	MDM4	ENST00000391947.2,ENST00000463049.1,ENST00000367182.3,ENST00000470908.1,ENST00000367179.3	chr1	204511916:204512072:204513662:204513812:204515924:204515960,	204513663	204513812	204513708	204513708	Frame_Shift_Del	T	-	p.F240fs
LIHC	TCGA-DD-A39Y-01	NFASC	ENST00000539706.1,ENST00000404076.1,ENST00000367171.4,ENST00000404907.1,ENST00000360049.4,ENST00000513543.1,ENST00000512826.1	chr1	204945798:204945923:204948095:204948197:204948489:204948687,	204948096	204948197	204948110	204948110	Frame_Shift_Del	C	-	p.P631fs
LIHC	TCGA-DD-A39Y-01	NFASC	ENST00000367171.4,ENST00000367170.4,ENST00000413225.1,ENST00000401399.1,ENST00000367172.4,ENST00000339876.6	chr1	204957791:204957934:204971723:204971876:204978684:204978816,204970297:204970414:204971723:204971876:204978684:204978816,	204971724	204971876	204971735	204971735	Frame_Shift_Del	A	-	p.K1158fs
LIHC	TCGA-DD-A39Y-01	CNTN2	ENST00000481872.2,ENST00000331830.4	chr1	205038954:205039189:205039553:205039666:205041074:205041261,	205039554	205039666	205039636	205039636	Frame_Shift_Del	G	-	p.Q838fs
LIHC	TCGA-DD-A39Y-01	LEMD1	ENST00000367153.4	chr1	205353415:205353492:205385359:205385424:205389582:205389702,205353415:205353492:205385359:205385424:205388357:205388480,	205385360	205385424	205385377	205385377	Frame_Shift_Del	T	-	p.S85fs
LIHC	TCGA-DD-A39Y-01	LEMD1	ENST00000367154.1,ENST00000391936.2	chr1	205385359:205385424:205388357:205388480:205389582:205389702,205350512:205350984:205388357:205388480:205389582:205389702,	205388358	205388480	205388453	205388453	Frame_Shift_Del	T	-	p.K37fs
LIHC	TCGA-DD-A39Y-01	CDK18	ENST00000504648.1,ENST00000506784.1,ENST00000509056.1,ENST00000429964.2,ENST00000360066.2,ENST00000489617.1,ENST00000515494.1,ENST00000505932.1	chr1	205496955:205497045:205497175:205497296:205498126:205498224,	205497176	205497296	205497244	205497244	Frame_Shift_Del	C	-	p.P309fs
LIHC	TCGA-DD-A39Y-01	CDK18	ENST00000504648.1,ENST00000506784.1,ENST00000509056.1,ENST00000429964.2,ENST00000360066.2,ENST00000489617.1,ENST00000468954.1,ENST00000515494.1,ENST00000505932.1	chr1	205497258:205497296:205498126:205498224:205498451:205498557,	205498127	205498224	205498212	205498212	Frame_Shift_Del	T	-	p.F354fs
LIHC	TCGA-DD-A39Y-01	SLC41A1	ENST00000468057.1,ENST00000484228.1,ENST00000367137.3	chr1	205760047:205760846:205763997:205764146:205764471:205764606,	205763998	205764146	205764090	205764090	Frame_Shift_Del	C	-	p.V422fs
LIHC	TCGA-DD-A39Y-01	SLC26A9	ENST00000340781.4,ENST00000367135.3,ENST00000367134.2	chr1	205898331:205898484:205899019:205899184:205900987:205901116,	205899020	205899184	205899056	205899056	Frame_Shift_Del	G	-	p.T227fs
LIHC	TCGA-DD-A39Y-01	PIGR	ENST00000356495.4	chr1	207105015:207105147:207105800:207105922:207106330:207106511,	207105801	207105922	207105915	207105915	Frame_Shift_Del	C	-	p.E632fs
LIHC	TCGA-DD-A39Y-01	FCAMR	ENST00000400962.3,ENST00000488345.1,ENST00000450945.2,ENST00000324852.4,ENST00000487149.1	chr1	207139059:207139203:207140396:207140457:207140927:207140996,	207140397	207140457	207140424	207140424	Frame_Shift_Del	G	-	p.L48fs
LIHC	TCGA-DD-A39Y-01	CD55	ENST00000482390.2,ENST00000391920.4,ENST00000367067.4,ENST00000367063.2,ENST00000391921.4,ENST00000367062.4,ENST00000314754.8,ENST00000488171.1,ENST00000367064.3,ENST00000367065.5	chr1	207504452:207504641:207510037:207510163:207510673:207510754,	207510038	207510163	207510127	207510127	Frame_Shift_Del	A	-	p.K315fs
LIHC	TCGA-DD-A39Y-01	CR2	ENST00000367057.3,ENST00000367058.3,ENST00000367059.3	chr1	207644341:207644432:207644767:207644844:207646116:207646213,	207644768	207644844	207644788	207644788	Frame_Shift_Del	T	-	p.V505fs
LIHC	TCGA-DD-A39Y-01	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782667	207782667	Frame_Shift_Del	A	-	p.N1977fs
LIHC	TCGA-DD-A39Y-01	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782916	207782916	Frame_Shift_Del	A	-	p.T2060fs
LIHC	TCGA-DD-A39Y-01	CD46	ENST00000441839.2,ENST00000358170.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1,ENST00000367047.1	chr1	207932983:207933069:207934593:207934791:207940357:207940462,	207934594	207934791	207934716	207934716	Frame_Shift_Del	T	-	p.F200fs
LIHC	TCGA-DD-A39Y-01	PLXNA2	ENST00000367033.3	chr1	208255756:208255853:208257724:208257925:208266130:208266245,	208257725	208257925	208257870	208257870	Frame_Shift_Del	T	-	p.K718fs
LIHC	TCGA-DD-A39Y-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209795880:209796025:209796326:209796524:209796849:209796895,	209796327	209796524	209796384	209796384	Frame_Shift_Del	C	-	p.G833fs
LIHC	TCGA-DD-A39Y-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209796849:209797070:209797184:209797345:209798992:209799371,	209797185	209797345	209797206	209797206	Frame_Shift_Del	T	-	p.I706fs
LIHC	TCGA-DD-A39Y-01	LAMB3	ENST00000415782.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209811878:209811993:209823308:209823463:209824261:209824321,	209823309	209823463	209823419	209823419	Frame_Shift_Del	C	-	p.A25fs
LIHC	TCGA-DD-A39Y-01	HSD11B1	ENST00000261465.1	chr1	209859549:209859630:209878261:209878375:209879155:209879286,	209878262	209878375	209878300	209878300	Frame_Shift_Del	A	-	p.K6fs
LIHC	TCGA-DD-A39Y-01	TRAF3IP3	ENST00000367026.3,ENST00000367025.3,ENST00000010338.4,ENST00000367024.1	chr1	209952659:209952719:209953814:209953951:209954689:209954803,	209953815	209953951	209953826	209953826	Frame_Shift_Del	C	-	p.P442fs
LIHC	TCGA-DD-A39Y-01	IRF6	ENST00000542854.1	chr1	209968634:209968763:209969692:209969897:209974584:209974761,209968634:209968763:209969692:209969897:209979291:209979389,	209969693	209969897	209969861	209969861	Frame_Shift_Del	C	-	p.V71fs
LIHC	TCGA-DD-A39Y-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000367009.1,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210761241:210761443:210796869:210797014:210847629:210847751,	210796870	210797014	210796923	210796923	Frame_Shift_Del	T	-	p.S433fs
LIHC	TCGA-DD-A39Y-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000367009.1,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210761241:210761443:210796869:210797014:210847629:210847751,	210796870	210797014	210796966	210796966	Frame_Shift_Del	G	-	p.G449fs
LIHC	TCGA-DD-A39Y-01	TRAF5	ENST00000488428.1	chr1	211529708:211529810:211533223:211533418:211534043:211534121,	211533224	211533418	211533372	211533372	Frame_Shift_Del	A	-	p.E166fs
LIHC	TCGA-DD-A39Y-01	TRAF5	ENST00000336184.2,ENST00000261464.5,ENST00000367004.3	chr1	211529708:211529810:211533253:211533418:211534043:211534121,	211533254	211533418	211533372	211533372	Frame_Shift_Del	A	-	p.E166fs
LIHC	TCGA-DD-A39Y-01	TRAF5	ENST00000336184.2,ENST00000462410.1,ENST00000261464.5,ENST00000367004.3	chr1	211534043:211534121:211534429:211534504:211538717:211538810,	211534430	211534504	211534477	211534477	Frame_Shift_Del	T	-	p.P223fs
LIHC	TCGA-DD-A39Y-01	LPGAT1	ENST00000366996.1,ENST00000366997.4	chr1	211952341:211952386:211956570:211956844:211960973:211961069,	211956571	211956844	211956826	211956826	Frame_Shift_Del	G	-	p.Q159fs
LIHC	TCGA-DD-A39Y-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000366992.3,ENST00000440600.2,ENST00000366993.3	chr1	212141854:212142049:212148507:212148714:212149923:212150000,	212148508	212148714	212148578	212148578	Frame_Shift_Del	T	-	p.N582fs
LIHC	TCGA-DD-A39Y-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212220638:212220759:212236225:212236291:212238258:212238371,	212236226	212236291	212236285	212236285	Frame_Shift_Del	A	-	p.K175fs
LIHC	TCGA-DD-A39Y-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212241940:212242045:212245442:212245555:212251514:212251604,	212245443	212245555	212245511	212245511	Frame_Shift_Del	T	-	p.F331fs
LIHC	TCGA-DD-A39Y-01	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212506838:212506940:212515529:212515622:212519144:212519225,	212515530	212515622	212515540	212515540	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-DD-A39Y-01	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212506838:212506940:212515529:212515622:212519144:212519225,	212515530	212515622	212515589	212515589	Frame_Shift_Del	A	-	p.A180fs
LIHC	TCGA-DD-A39Y-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548580	212548580	Frame_Shift_Del	A	-	p.F282fs
LIHC	TCGA-DD-A39Y-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548597	212548597	Frame_Shift_Del	T	-	p.S277fs
LIHC	TCGA-DD-A39Y-01	NENF	ENST00000366988.3,ENST00000473900.1	chr1	212606332:212606462:212617680:212617784:212619171:212619714,212615910:212615967:212617680:212617784:212619171:212619714,	212617681	212617784	212617699	212617699	Frame_Shift_Del	C	-	p.A86fs
LIHC	TCGA-DD-A39Y-01	NENF	ENST00000366988.3,ENST00000473900.1	chr1	212606332:212606462:212617680:212617784:212619171:212619714,212615910:212615967:212617680:212617784:212619171:212619714,	212617681	212617784	212617774	212617774	Frame_Shift_Del	C	-	p.T111fs
LIHC	TCGA-DD-A39Y-01	ATF3	ENST00000465155.1,ENST00000341491.4	chr1	212782256:212782272:212788359:212788603:212791468:212791576,	212788360	212788603	212788580	212788580	Frame_Shift_Del	G	-	p.G73fs
LIHC	TCGA-DD-A39Y-01	BATF3	ENST00000243440.1	chr1	212859759:212860321:212870302:212870407:212873014:212873327,	212870303	212870407	212870364	212870364	Frame_Shift_Del	T	-	p.N45fs
LIHC	TCGA-DD-A39Y-01	TATDN3	ENST00000526997.1	chr1	212981077:212981190:212985592:212985670:212988354:212988517,212977960:212977993:212985592:212985670:212988354:212988517,	212985593	212985670	212985663	212985663	Frame_Shift_Del	A	-	p.E225fs
LIHC	TCGA-DD-A39Y-01	TATDN3	ENST00000532324.1	chr1	212981077:212981190:212985568:212985670:212988388:212988939,212981077:212981190:212985568:212985670:212988354:212988517,	212985569	212985670	212985663	212985663	Frame_Shift_Del	A	-	p.E225fs
LIHC	TCGA-DD-A39Y-01	TATDN3	ENST00000366974.4,ENST00000525574.1,ENST00000526641.1	chr1	212977960:212977993:212985589:212985670:212988354:212988517,212981077:212981190:212985589:212985670:212988354:212988517,	212985590	212985670	212985663	212985663	Frame_Shift_Del	A	-	p.E225fs
LIHC	TCGA-DD-A39Y-01	FLVCR1	ENST00000366971.4	chr1	213037066:213037211:213046019:213046160:213056712:213056780,	213046020	213046160	213046046	213046046	Frame_Shift_Del	C	-	p.P304fs
LIHC	TCGA-DD-A39Y-01	ANGEL2	ENST00000366962.3,ENST00000460337.1	chr1	213180470:213180540:213181551:213181808:213186434:213186760,	213181552	213181808	213181561	213181561	Frame_Shift_Del	A	-	p.F211fs
LIHC	TCGA-DD-A39Y-01	ANGEL2	ENST00000366962.3,ENST00000460337.1	chr1	213180470:213180540:213181551:213181808:213186434:213186760,	213181552	213181808	213181758	213181758	Frame_Shift_Del	T	-	p.T146fs
LIHC	TCGA-DD-A39Y-01	ANGEL2	ENST00000481918.1	chr1	213181551:213181808:213186434:213186760:213188567:213188835,	213186435	213186760	213186451	213186451	Frame_Shift_Del	T	-	p.K123fs
LIHC	TCGA-DD-A39Y-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213415378	213415378	Frame_Shift_Del	G	-	p.L853fs
LIHC	TCGA-DD-A39Y-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557610	214557610	Frame_Shift_Del	C	-	p.A530fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813282	214813282	Frame_Shift_Del	A	-	p.E534fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813306	214813306	Frame_Shift_Del	A	-	p.E542fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214816551	214816551	Frame_Shift_Del	T	-	p.L1624fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214817935	214817935	Frame_Shift_Del	A	-	p.S1674fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818340	214818340	Frame_Shift_Del	A	-	p.S1809fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818793	214818793	Frame_Shift_Del	A	-	p.R1960fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818858	214818858	Frame_Shift_Del	A	-	p.E1982fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819474	214819474	Frame_Shift_Del	A	-	p.L2187fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819512	214819512	Frame_Shift_Del	T	-	p.V2200fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819622	214819622	Frame_Shift_Del	A	-	p.K2237fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214820390	214820390	Frame_Shift_Del	A	-	p.K2493fs
LIHC	TCGA-DD-A39Y-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214820502	214820502	Frame_Shift_Del	A	-	p.Q2530fs
LIHC	TCGA-DD-A39Y-01	KCTD3	ENST00000259154.4,ENST00000448333.1	chr1	215751012:215751071:215751343:215751424:215752342:215752480,	215751344	215751424	215751398	215751398	Frame_Shift_Del	T	-	p.L124fs
LIHC	TCGA-DD-A39Y-01	ESRRG	ENST00000366938.2,ENST00000359162.2,ENST00000366940.2,ENST00000493748.1,ENST00000360012.3,ENST00000391890.3,ENST00000361395.2,ENST00000361525.3,ENST00000408911.3,ENST00000475275.1,ENST00000366937.1,ENST00000487276.1,ENST00000493603.1	chr1	216741329:216741440:216824314:216824431:216850417:216850833,	216824315	216824431	216824334	216824334	Frame_Shift_Del	T	-	p.K167fs
LIHC	TCGA-DD-A39Y-01	SPATA17	ENST00000366933.4	chr1	217804665:217804788:217822223:217822313:217824438:217824520,	217822224	217822313	217822242	217822242	Frame_Shift_Del	A	-	p.R29fs
LIHC	TCGA-DD-A39Y-01	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220198473:220198600:220203727:220203822:220205728:220205868,	220203728	220203822	220203809	220203809	Frame_Shift_Del	T	-	p.K181fs
LIHC	TCGA-DD-A39Y-01	BPNT1	ENST00000414869.2,ENST00000322067.7,ENST00000469520.2,ENST00000544404.1	chr1	220233027:220233133:220236098:220236296:220239414:220239459,220233027:220233133:220236098:220236296:220240643:220240735,	220236099	220236296	220236253	220236253	Frame_Shift_Del	A	-	p.L173fs
LIHC	TCGA-DD-A39Y-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220315144:220315290:220316285:220316476:220318850:220318995,	220316286	220316476	220316336	220316336	Frame_Shift_Del	A	-	p.K800fs
LIHC	TCGA-DD-A39Y-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220315144:220315290:220316285:220316476:220318850:220318995,	220316286	220316476	220316460	220316460	Frame_Shift_Del	T	-	p.L840fs
LIHC	TCGA-DD-A39Y-01	RAB3GAP2	ENST00000358951.2	chr1	220335539:220335610:220338074:220338141:220340634:220340741,	220338075	220338141	220338099	220338099	Frame_Shift_Del	T	-	p.I1044fs
LIHC	TCGA-DD-A39Y-01	RAB3GAP2	ENST00000358951.2	chr1	220368639:220368719:220369591:220369740:220375617:220375716,	220369592	220369740	220369697	220369697	Frame_Shift_Del	G	-	p.S285fs
LIHC	TCGA-DD-A39Y-01	DUSP10	ENST00000477026.1,ENST00000323825.3	chr1	221875768:221876019:221879436:221879808:221912275:221913129,221875768:221876019:221879436:221879808:221915322:221915431,	221879437	221879808	221879775	221879775	Frame_Shift_Del	T	-	p.N282fs
LIHC	TCGA-DD-A39Y-01	TAF1A	ENST00000350027.4,ENST00000352967.4,ENST00000543857.1	chr1	222750786:222750985:222753100:222753214:222761784:222761907,222750786:222750985:222753100:222753214:222757469:222757639,	222753101	222753214	222753126	222753126	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A39Y-01	TAF1A	ENST00000465263.1	chr1	222750786:222750985:222753100:222753232:222757469:222757639,	222753101	222753232	222753126	222753126	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A39Y-01	TAF1A	ENST00000487009.1	chr1	222750786:222750985:222753100:222753167:222757469:222757639,	222753101	222753167	222753126	222753126	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-DD-A39Y-01	MIA3	ENST00000344441.6,ENST00000344922.5,ENST00000340535.7	chr1	222827996:222828135:222832063:222832165:222832794:222832855,	222832064	222832165	222832154	222832154	Frame_Shift_Del	A	-	p.V1566fs
LIHC	TCGA-DD-A39Y-01	BROX	ENST00000426638.1,ENST00000537020.1,ENST00000340934.5	chr1	222892604:222892701:222895760:222895856:222897433:222897506,	222895761	222895856	222895778	222895778	Frame_Shift_Del	T	-	p.V108fs
LIHC	TCGA-DD-A39Y-01	BROX	ENST00000426638.1,ENST00000537020.1,ENST00000340934.5	chr1	222892604:222892701:222895760:222895856:222897433:222897506,	222895761	222895856	222895812	222895812	Frame_Shift_Del	T	-	p.A119fs
LIHC	TCGA-DD-A39Y-01	TP53BP2	ENST00000498843.1,ENST00000343537.7,ENST00000391878.2	chr1	223983875:223984292:223985916:223986379:223987600:223987749,	223985917	223986379	223986085	223986085	Frame_Shift_Del	G	-	p.Q465fs
LIHC	TCGA-DD-A39Y-01	FBXO28	ENST00000523990.1	chr1	224321775:224321914:224340843:224341039:224345053:224345272,224318173:224318283:224340843:224341039:224345053:224345724,	224340844	224341039	224340893	224340893	Frame_Shift_Del	C	-	p.A189fs
LIHC	TCGA-DD-A39Y-01	FBXO28	ENST00000523990.1	chr1	224321775:224321914:224340843:224341039:224345053:224345272,224318173:224318283:224340843:224341039:224345053:224345724,	224340844	224341039	224340991	224340991	Frame_Shift_Del	A	-	p.K222fs
LIHC	TCGA-DD-A39Y-01	DEGS1	ENST00000323699.4,ENST00000391877.3	chr1	224370967:224371120:224377278:224378021:224380033:224380055,	224377279	224378021	224377322	224377322	Frame_Shift_Del	T	-	p.N42fs
LIHC	TCGA-DD-A39Y-01	DEGS1	ENST00000323699.4,ENST00000391877.3	chr1	224370967:224371120:224377278:224378021:224380033:224380055,	224377279	224378021	224377368	224377368	Frame_Shift_Del	T	-	p.F58fs
LIHC	TCGA-DD-A39Y-01	WDR26	ENST00000295024.6,ENST00000414423.2	chr1	224592131:224592272:224599128:224599267:224605961:224606074,	224599129	224599267	224599155	224599155	Frame_Shift_Del	T	-	p.T378fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000430092.1,ENST00000400952.3,ENST00000439375.2	chr1	225155247:225155285:225156460:225156576:225157335:225157531,225155247:225155285:225156460:225156576:225161792:225161855,	225156461	225156576	225156484	225156484	Frame_Shift_Del	A	-	p.V225fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211543	225211543	Frame_Shift_Del	A	-	p.E445fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225231445:225231491:225231587:225231685:225237911:225238078,	225231588	225231685	225231645	225231645	Frame_Shift_Del	A	-	p.V624fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225266908:225267250:225268080:225268450:225270250:225270441,	225268081	225268450	225268445	225268445	Frame_Shift_Del	A	-	p.E1044fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000495456.1,ENST00000328556.5	chr1	225305672:225305701:225306921:225306996:225311228:225311316,	225306922	225306996	225306969	225306969	Frame_Shift_Del	A	-	p.E1380fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000328556.5	chr1	225311228:225311316:225328469:225328723:225332098:225332330,	225328470	225328723	225328500	225328500	Frame_Shift_Del	A	-	p.K1412fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225528158:225528403:225533663:225534082:225534157:225534356,	225533664	225534082	225533704	225533704	Frame_Shift_Del	A	-	p.R3480fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225528158:225528403:225533663:225534082:225534157:225534356,	225533664	225534082	225533752	225533752	Frame_Shift_Del	A	-	p.T3496fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225567860:225568024:225569084:225569281:225576080:225576193,	225569085	225569281	225569243	225569243	Frame_Shift_Del	A	-	p.N4245fs
LIHC	TCGA-DD-A39Y-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225569084:225569281:225576080:225576193:225577435:225577575,	225576081	225576193	225576121	225576121	Frame_Shift_Del	T	-	p.I4271fs
LIHC	TCGA-DD-A39Y-01	ENAH	ENST00000366844.3,ENST00000358675.2	chr1	225688693:225688772:225692692:225692755:225695652:225695719,	225692693	225692755	225692722	225692722	Frame_Shift_Del	A	-	p.F524fs
LIHC	TCGA-DD-A39Y-01	ENAH	ENST00000366844.3,ENST00000358675.2	chr1	225688693:225688772:225692692:225692755:225695652:225695719,	225692693	225692755	225692735	225692735	Frame_Shift_Del	T	-	p.N520fs
LIHC	TCGA-DD-A39Y-01	ENAH	ENST00000284563.6	chr1	225702297:225702602:225704897:225705692:225706899:225706976,	225704898	225705692	225705524	225705524	Frame_Shift_Del	G	-	p.P343fs
LIHC	TCGA-DD-A39Y-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.P133fs
LIHC	TCGA-DD-A39Y-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226924169	226924169	Frame_Shift_Del	G	-	p.R331fs
LIHC	TCGA-DD-A39Y-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226924397	226924397	Frame_Shift_Del	C	-	p.V255fs
LIHC	TCGA-DD-A39Y-01	CDC42BPA	ENST00000366769.3,ENST00000334218.5,ENST00000366767.3,ENST00000448940.1	chr1	227227831:227227937:227235627:227235711:227257477:227257554,	227235628	227235711	227235661	227235661	Frame_Shift_Del	T	-	p.K985fs
LIHC	TCGA-DD-A39Y-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366767.3,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227327276:227327443:227330645:227330725:227333189:227333438,	227330646	227330725	227330712	227330712	Frame_Shift_Del	G	-	p.P387fs
LIHC	TCGA-DD-A39Y-01	JMJD4	ENST00000366758.3,ENST00000438896.2	chr1	227920629:227920728:227921114:227921382:227921607:227921733,	227921115	227921382	227921212	227921212	Frame_Shift_Del	G	-	p.P288fs
LIHC	TCGA-DD-A39Y-01	JMJD4	ENST00000366758.3,ENST00000438896.2	chr1	227920629:227920728:227921114:227921382:227921607:227921733,	227921115	227921382	227921325	227921325	Frame_Shift_Del	C	-	p.G250fs
LIHC	TCGA-DD-A39Y-01	SNAP47	ENST00000426344.1,ENST00000366759.4,ENST00000315781.5	chr1	227923136:227923200:227935392:227935934:227946695:227947186,	227935393	227935934	227935790	227935790	Frame_Shift_Del	G	-	p.R163fs
LIHC	TCGA-DD-A39Y-01	GUK1	ENST00000493138.1	chr1	228333729:228333768:228334542:228334639:228335106:228335146,228333729:228333768:228334542:228334639:228335315:228335358,	228334543	228334639	228334619	228334619	Frame_Shift_Del	G	-	p.S77fs
LIHC	TCGA-DD-A39Y-01	GUK1	ENST00000462807.1,ENST00000435153.1,ENST00000492871.1,ENST00000366721.1,ENST00000485838.1,ENST00000464858.1,ENST00000460224.1,ENST00000478725.1,ENST00000472939.1	chr1	228333729:228333768:228334561:228334639:228335106:228335146,	228334562	228334639	228334619	228334619	Frame_Shift_Del	G	-	p.S77fs
LIHC	TCGA-DD-A39Y-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228401141:228401411:228401874:228402135:228402490:228402799,	228401875	228402135	228401974	228401974	Frame_Shift_Del	G	-	p.W453fs
LIHC	TCGA-DD-A39Y-01	OBSCN	ENST00000570156.2	chr1	228404713:228404989:228407024:228407300:228412159:228412435,	228407025	228407300	228407174	228407174	Frame_Shift_Del	A	-	p.K935fs
LIHC	TCGA-DD-A39Y-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228433113:228433389:228434228:228434504:228437665:228437941,	228434229	228434504	228434467	228434467	Frame_Shift_Del	T	-	p.A1424fs
LIHC	TCGA-DD-A39Y-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229601166:229601266:229602380:229602503:229606326:229606551,	229602381	229602503	229602443	229602443	Frame_Shift_Del	C	-	p.D713fs
LIHC	TCGA-DD-A39Y-01	CAPN9	ENST00000354537.1,ENST00000271971.2	chr1	230891082:230891152:230895257:230895376:230898398:230898532,	230895258	230895376	230895325	230895325	Frame_Shift_Del	C	-	p.I117fs
LIHC	TCGA-DD-A39Y-01	TTC13	ENST00000366662.4,ENST00000414259.1,ENST00000366661.4	chr1	231069561:231069607:231075131:231075242:231076185:231076302,	231075132	231075242	231075190	231075190	Frame_Shift_Del	T	-	p.N281fs
LIHC	TCGA-DD-A39Y-01	EGLN1	ENST00000476717.1,ENST00000366641.3	chr1	231503314:231503382:231506307:231506444:231509725:231509845,	231506308	231506444	231506359	231506359	Frame_Shift_Del	A	-	p.F366fs
LIHC	TCGA-DD-A39Y-01	SIPA1L2	ENST00000262861.4,ENST00000366630.1	chr1	232600585:232601162:232607116:232607274:232615372:232615476,	232607117	232607274	232607193	232607193	Frame_Shift_Del	T	-	p.S723fs
LIHC	TCGA-DD-A39Y-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3,ENST00000491632.1,ENST00000444620.1	chr1	235344899:235346108:235357327:235357526:235359345:235359430,	235357328	235357526	235357477	235357477	Frame_Shift_Del	T	-	p.N659fs
LIHC	TCGA-DD-A39Y-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235894331:235894477:235896802:235896991:235897129:235897206,	235896803	235896991	235896893	235896893	Frame_Shift_Del	T	-	p.K2904fs
LIHC	TCGA-DD-A39Y-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236716880:236717039:236717897:236718052:236718595:236718764,	236717898	236718052	236718039	236718039	Frame_Shift_Del	A	-	p.F1979fs
LIHC	TCGA-DD-A39Y-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236724524:236724571:236727797:236727961:236729218:236729345,	236727798	236727961	236727864	236727864	Frame_Shift_Del	C	-	p.R1511fs
LIHC	TCGA-DD-A39Y-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236724524:236724571:236727797:236727961:236729218:236729345,	236727798	236727961	236727924	236727924	Frame_Shift_Del	T	-	p.E1491fs
LIHC	TCGA-DD-A39Y-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236729945:236730176:236732295:236732424:236734650:236734772,	236732296	236732424	236732392	236732392	Frame_Shift_Del	A	-	p.F1327fs
LIHC	TCGA-DD-A39Y-01	HEATR1	ENST00000366581.2	chr1	236736024:236736128:236737501:236737633:236739518:236739677,	236737502	236737633	236737508	236737508	Frame_Shift_Del	A	-	p.F1151fs
LIHC	TCGA-DD-A39Y-01	ACTN2	ENST00000492634.1,ENST00000542672.1,ENST00000366578.4	chr1	236889232:236889320:236890977:236891056:236894532:236894614,	236890978	236891056	236890988	236890988	Frame_Shift_Del	G	-	p.G183fs
LIHC	TCGA-DD-A39Y-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000463959.1	chr1	237001713:237001899:237013643:237013823:237015820:237015937,	237013644	237013823	237013661	237013661	Frame_Shift_Del	A	-	p.T511fs
LIHC	TCGA-DD-A39Y-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000463959.1	chr1	237001713:237001899:237013643:237013823:237015820:237015937,	237013644	237013823	237013701	237013701	Frame_Shift_Del	A	-	p.K526fs
LIHC	TCGA-DD-A39Y-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000609119.1,ENST00000542537.1	chr1	237935311:237935400:237936819:237936948:237941965:237942070,	237936820	237936948	237936909	237936909	Frame_Shift_Del	G	-	p.V3912fs
LIHC	TCGA-DD-A39Y-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370419	240370419	Frame_Shift_Del	C	-	p.C769fs
LIHC	TCGA-DD-A39Y-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371005	240371005	Frame_Shift_Del	C	-	p.P965fs
LIHC	TCGA-DD-A39Y-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371203	240371203	Frame_Shift_Del	C	-	p.P1035fs
LIHC	TCGA-DD-A39Y-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371335	240371335	Frame_Shift_Del	C	-	p.P1079fs
LIHC	TCGA-DD-A39Y-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371368	240371368	Frame_Shift_Del	C	-	p.P1090fs
LIHC	TCGA-DD-A39Y-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371521	240371521	Frame_Shift_Del	G	-	p.G1137fs
LIHC	TCGA-DD-A39Y-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753511	241753511	Frame_Shift_Del	T	-	p.T402fs
LIHC	TCGA-DD-A39Y-01	WDR64	ENST00000425826.2,ENST00000468967.2,ENST00000366552.2,ENST00000437684.2,ENST00000414635.1	chr1	241951150:241951336:241953892:241953998:241958508:241958589,	241953893	241953998	241953948	241953948	Frame_Shift_Del	T	-	p.F973fs
LIHC	TCGA-DD-A39Y-01	COX20	ENST00000366528.3	chr1	244998960:244999058:245005245:245005360:245005500:245005560,244999786:244999822:245005245:245005360:245005496:245005560,	245005246	245005360	245005347	245005347	Frame_Shift_Del	T	-	p.H48fs
LIHC	TCGA-DD-A39Y-01	EFCAB2	ENST00000549220.1	chr1	245133724:245133745:245165422:245165534:245180543:245180628,245133724:245133745:245165422:245165534:245222687:245222760,	245165423	245165534	245165523	245165523	Frame_Shift_Del	G	-	p.W141fs
LIHC	TCGA-DD-A39Y-01	EFCAB2	ENST00000495271.1,ENST00000447569.2,ENST00000366523.1	chr1	245165454:245165534:245180543:245180628:245222687:245222760,245133724:245133745:245180543:245180628:245222687:245222760,	245180544	245180628	245180567	245180567	Frame_Shift_Del	A	-	p.K154fs
LIHC	TCGA-DD-A39Y-01	KIF26B	ENST00000407071.2	chr1	245319583:245319985:245530135:245530669:245582880:245583047,	245530136	245530669	245530496	245530496	Frame_Shift_Del	G	-	p.G276fs
LIHC	TCGA-DD-A39Y-01	TFB2M	ENST00000366514.4	chr1	246703861:246704504:246707822:246707983:246711846:246711909,	246707823	246707983	246707941	246707941	Frame_Shift_Del	T	-	p.M301fs
LIHC	TCGA-DD-A39Y-01	TFB2M	ENST00000544618.1	chr1	246714514:246714604:246719874:246720023:246720682:246720836,246714514:246714604:246719874:246720023:246727647:246727736,	246719875	246720023	246720010	246720010	Frame_Shift_Del	T	-	p.K190fs
LIHC	TCGA-DD-A39Y-01	CNST	ENST00000366513.4	chr1	246729815:246729965:246754813:246755243:246784730:246784886,	246754814	246755243	246755180	246755180	Frame_Shift_Del	A	-	p.K107fs
LIHC	TCGA-DD-A39Y-01	AHCTF1	ENST00000470300.1	chr1	247006003:247006078:247007096:247007230:247012916:247013151,247004263:247004300:247007096:247007230:247012916:247013151,	247007097	247007230	247007131	247007131	Frame_Shift_Del	T	-	p.N2199fs
LIHC	TCGA-DD-A39Y-01	ZNF124	ENST00000491848.1,ENST00000340684.6	chr1	247320218:247320519:247322307:247322368:247322988:247323115,	247322308	247322368	247322326	247322326	Frame_Shift_Del	T	-	p.N67fs
LIHC	TCGA-DD-A39Y-01	NLRP3	ENST00000391827.2,ENST00000336119.3,ENST00000391828.3	chr1	247597464:247597575:247599271:247599442:247607273:247607444,	247599272	247599442	247599403	247599403	Frame_Shift_Del	A	-	p.E877fs
LIHC	TCGA-DD-A39Y-01	ACP1	ENST00000484464.1,ENST00000453390.1,ENST00000442386.1,ENST00000272065.5,ENST00000463831.1,ENST00000272067.6	chr2	272036:272150:276979:277085:277226:277261,275139:275201:276979:277085:277226:277261,	276980	277085	277023	277023	Frame_Shift_Del	A	-	p.K113fs
LIHC	TCGA-DD-A39Y-01	TPO	ENST00000382201.3	chr2	1480857:1481376:1488367:1488626:1491592:1491763,1480857:1481376:1488367:1488626:1497573:1497811,	1488368	1488626	1488391	1488391	Frame_Shift_Del	C	-	p.I454fs
LIHC	TCGA-DD-A39Y-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652856	1652856	Frame_Shift_Del	G	-	p.P899fs
LIHC	TCGA-DD-A39Y-01	MYT1L	ENST00000428368.2	chr2	1915791:1915882:1920976:1921111:1926063:1927035,	1920977	1921111	1921068	1921068	Frame_Shift_Del	G	-	p.P509fs
LIHC	TCGA-DD-A39Y-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926075	1926075	Frame_Shift_Del	T	-	p.K489fs
LIHC	TCGA-DD-A39Y-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926075	1926075	Frame_Shift_Del	T	-	p.K489fs
LIHC	TCGA-DD-A39Y-01	RPS7	ENST00000403564.1,ENST00000304921.5,ENST00000406376.1,ENST00000462576.1	chr2	3625301:3625364:3627699:3627850:3628394:3628491,	3627700	3627850	3627848	3627848	Frame_Shift_Del	A	-	p.K169fs
LIHC	TCGA-DD-A39Y-01	COLEC11	ENST00000438814.1,ENST00000416132.1,ENST00000418971.2,ENST00000349077.4	chr2	3651904:3652060:3660900:3660972:3687867:3687921,3653641:3653833:3660900:3660972:3685122:3685194,3653641:3653833:3660900:3660972:3687867:3687921,3651904:3652060:3660900:3660972:3685122:3685194,	3660901	3660972	3660908	3660908	Frame_Shift_Del	G	-	p.A20fs
LIHC	TCGA-DD-A39Y-01	COLEC11	ENST00000438814.1,ENST00000416132.1,ENST00000418971.2,ENST00000349077.4	chr2	3651904:3652060:3660900:3660972:3687867:3687921,3653641:3653833:3660900:3660972:3685122:3685194,3653641:3653833:3660900:3660972:3687867:3687921,3651904:3652060:3660900:3660972:3685122:3685194,	3660901	3660972	3660931	3660931	Frame_Shift_Del	C	-	p.A28fs
LIHC	TCGA-DD-A39Y-01	COLEC11	ENST00000438814.1,ENST00000403096.3,ENST00000416132.1,ENST00000418971.2,ENST00000349077.4	chr2	3651904:3652060:3685122:3685194:3687867:3687921,3653641:3653833:3685122:3685194:3687867:3687921,3660900:3660972:3685122:3685194:3687867:3687921,	3685123	3685194	3685169	3685169	Frame_Shift_Del	A	-	p.G57fs
LIHC	TCGA-DD-A39Y-01	RSAD2	ENST00000382040.3	chr2	7018153:7018277:7023501:7023663:7027065:7027184,	7023502	7023663	7023550	7023550	Frame_Shift_Del	G	-	p.R132fs
LIHC	TCGA-DD-A39Y-01	MBOAT2	ENST00000305997.3	chr2	8998988:8999034:9000742:9000894:9002719:9002852,	9000743	9000894	9000763	9000763	Frame_Shift_Del	T	-	p.K439fs
LIHC	TCGA-DD-A39Y-01	ASAP2	ENST00000281419.3	chr2	9528511:9528675:9531190:9531325:9533610:9533776,	9531191	9531325	9531301	9531301	Frame_Shift_Del	C	-	p.P833fs
LIHC	TCGA-DD-A39Y-01	CPSF3	ENST00000475482.1,ENST00000238112.3,ENST00000460593.1	chr2	9570051:9570149:9570880:9571009:9572639:9572817,	9570881	9571009	9571002	9571002	Frame_Shift_Del	A	-	p.K75fs
LIHC	TCGA-DD-A39Y-01	IAH1	ENST00000545602.1,ENST00000481367.1	chr2	9624560:9624679:9628275:9628521:9634830:9634989,	9628276	9628521	9628363	9628363	Frame_Shift_Del	A	-	p.K106fs
LIHC	TCGA-DD-A39Y-01	ADAM17	ENST00000310823.3	chr2	9645294:9645494:9650107:9650260:9658029:9658118,	9650108	9650260	9650219	9650219	Frame_Shift_Del	A	-	p.F411fs
LIHC	TCGA-DD-A39Y-01	GRHL1	ENST00000324883.5,ENST00000464418.1,ENST00000324907.9,ENST00000405379.2	chr2	10130823:10130901:10132134:10132274:10133334:10133372,10130823:10130875:10132134:10132274:10133334:10133372,	10132135	10132274	10132264	10132264	Frame_Shift_Del	G	-	p.R484fs
LIHC	TCGA-DD-A39Y-01	NOL10	ENST00000381685.5,ENST00000542668.1,ENST00000538384.1,ENST00000431319.1	chr2	10784445:10784498:10794606:10794673:10799297:10799376,10784445:10784498:10794606:10794673:10797867:10798017,	10794607	10794673	10794667	10794667	Frame_Shift_Del	T	-	p.I255fs
LIHC	TCGA-DD-A39Y-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1	chr2	10808783:10808849:10811679:10811816:10813645:10813683,	10811680	10811816	10811753	10811753	Frame_Shift_Del	T	-	p.T131fs
LIHC	TCGA-DD-A39Y-01	ROCK2	ENST00000401753.1,ENST00000315872.6	chr2	11338616:11338711:11338806:11338900:11341082:11341269,	11338807	11338900	11338820	11338820	Frame_Shift_Del	T	-	p.K997fs
LIHC	TCGA-DD-A39Y-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11770122:11770235:11772034:11772239:11773014:11773189,	11772035	11772239	11772077	11772077	Frame_Shift_Del	G	-	p.G1552fs
LIHC	TCGA-DD-A39Y-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11777841:11778042:11778796:11778935:11780416:11782489,	11778797	11778935	11778892	11778892	Frame_Shift_Del	T	-	p.S1881fs
LIHC	TCGA-DD-A39Y-01	LPIN1	ENST00000256720.2,ENST00000396097.1,ENST00000425416.2,ENST00000449576.2,ENST00000396099.1,ENST00000404113.2	chr2	11945195:11945282:11955213:11955366:11959609:11959724,	11955214	11955366	11955243	11955243	Frame_Shift_Del	C	-	p.A724fs
LIHC	TCGA-DD-A39Y-01	LPIN1	ENST00000256720.2,ENST00000396097.1,ENST00000425416.2,ENST00000449576.2,ENST00000396099.1,ENST00000404113.2	chr2	11945195:11945282:11955213:11955366:11959609:11959724,	11955214	11955366	11955314	11955314	Frame_Shift_Del	C	-	p.P748fs
LIHC	TCGA-DD-A39Y-01	NBAS	ENST00000281513.5,ENST00000442506.1,ENST00000441750.1	chr2	15496426:15496540:15506703:15506817:15514731:15514844,	15506704	15506817	15506762	15506762	Frame_Shift_Del	G	-	p.P1253fs
LIHC	TCGA-DD-A39Y-01	FAM49A	ENST00000451689.1,ENST00000381323.3,ENST00000445605.1	chr2	16746913:16747035:16769317:16769397:16805131:16805284,	16769318	16769397	16769347	16769347	Frame_Shift_Del	T	-	p.N14fs
LIHC	TCGA-DD-A39Y-01	FAM49A	ENST00000451689.1,ENST00000381323.3,ENST00000445605.1	chr2	16746913:16747035:16769317:16769397:16805131:16805284,	16769318	16769397	16769380	16769380	Frame_Shift_Del	T	-	p.N3fs
LIHC	TCGA-DD-A39Y-01	SMC6	ENST00000402989.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17851689:17851842:17860125:17860231:17864904:17865030,	17860126	17860231	17860156	17860156	Frame_Shift_Del	A	-	p.F960fs
LIHC	TCGA-DD-A39Y-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17884423:17884559:17888485:17888646:17889905:17890020,	17888486	17888646	17888597	17888597	Frame_Shift_Del	T	-	p.N632fs
LIHC	TCGA-DD-A39Y-01	SMC6	ENST00000351948.4	chr2	17922945:17922996:17927093:17927218:17934892:17935040,	17927094	17927218	17927165	17927165	Frame_Shift_Del	T	-	p.R17fs
LIHC	TCGA-DD-A39Y-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511307	20511307	Frame_Shift_Del	T	-	p.I156fs
LIHC	TCGA-DD-A39Y-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511377	20511377	Frame_Shift_Del	T	-	p.K132fs
LIHC	TCGA-DD-A39Y-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000442400.1,ENST00000319801.5,ENST00000420234.1	chr2	20512059:20512184:20518297:20518406:20527070:20527139,	20518298	20518406	20518306	20518306	Frame_Shift_Del	C	-	p.G51fs
LIHC	TCGA-DD-A39Y-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000442400.1,ENST00000319801.5,ENST00000420234.1	chr2	20512059:20512184:20518297:20518406:20527070:20527139,	20518298	20518406	20518380	20518380	Frame_Shift_Del	T	-	p.E26fs
LIHC	TCGA-DD-A39Y-01	HS1BP3	ENST00000304031.3	chr2	20817581:20819005:20823655:20823791:20824491:20824533,	20823656	20823791	20823724	20823724	Frame_Shift_Del	T	-	p.P284fs
LIHC	TCGA-DD-A39Y-01	APOB	ENST00000233242.1	chr2	21238241:21238417:21239310:21239521:21241863:21241985,	21239311	21239521	21239381	21239381	Frame_Shift_Del	T	-	p.T1088fs
LIHC	TCGA-DD-A39Y-01	APOB	ENST00000233242.1,ENST00000399256.4	chr2	21259971:21260127:21260829:21260983:21263809:21263955,	21260830	21260983	21260942	21260942	Frame_Shift_Del	A	-	p.F142fs
LIHC	TCGA-DD-A39Y-01	ATAD2B	ENST00000238789.5,ENST00000381024.4,ENST00000474583.1	chr2	23977516:23977644:23980287:23980971:23985078:23985216,	23980288	23980971	23980463	23980463	Frame_Shift_Del	T	-	p.K1301fs
LIHC	TCGA-DD-A39Y-01	UBXN2A	ENST00000309033.4,ENST00000446425.2,ENST00000404924.1	chr2	24205765:24205903:24207542:24207701:24222541:24222807,	24207543	24207701	24207552	24207552	Frame_Shift_Del	A	-	p.P145fs
LIHC	TCGA-DD-A39Y-01	UBXN2A	ENST00000309033.4,ENST00000446425.2,ENST00000404924.1	chr2	24205765:24205903:24207542:24207701:24222541:24222807,	24207543	24207701	24207659	24207659	Frame_Shift_Del	C	-	p.A181fs
LIHC	TCGA-DD-A39Y-01	UBXN2A	ENST00000309033.4,ENST00000446425.2,ENST00000404924.1	chr2	24205765:24205903:24207542:24207701:24222541:24222807,	24207543	24207701	24207666	24207666	Frame_Shift_Del	A	-	p.G183fs
LIHC	TCGA-DD-A39Y-01	TP53I3	ENST00000238721.4,ENST00000335934.4	chr2	24300503:24300631:24302313:24302510:24303688:24303901,	24302314	24302510	24302362	24302362	Frame_Shift_Del	A	-	p.F256fs
LIHC	TCGA-DD-A39Y-01	TP53I3	ENST00000417886.1	chr2	24303688:24303901:24305870:24306022:24307058:24307181,	24305871	24306022	24305979	24305979	Frame_Shift_Del	A	-	p.L61fs
LIHC	TCGA-DD-A39Y-01	TP53I3	ENST00000238721.4,ENST00000335934.4,ENST00000407482.1,ENST00000313482.4,ENST00000413037.1	chr2	24303688:24303901:24305754:24306022:24307058:24307181,	24305755	24306022	24305979	24305979	Frame_Shift_Del	A	-	p.L61fs
LIHC	TCGA-DD-A39Y-01	TP53I3	ENST00000417886.1	chr2	24303688:24303901:24305870:24306022:24307058:24307181,	24305871	24306022	24306003	24306003	Frame_Shift_Del	G	-	p.P55fs
LIHC	TCGA-DD-A39Y-01	TP53I3	ENST00000238721.4,ENST00000335934.4,ENST00000407482.1,ENST00000313482.4,ENST00000413037.1	chr2	24303688:24303901:24305754:24306022:24307058:24307181,	24305755	24306022	24306003	24306003	Frame_Shift_Del	G	-	p.P55fs
LIHC	TCGA-DD-A39Y-01	TP53I3	ENST00000313482.4	chr2	24305870:24306022:24307058:24307201:24307600:24307655,	24307059	24307201	24307118	24307118	Frame_Shift_Del	C	-	p.E27fs
LIHC	TCGA-DD-A39Y-01	FAM228B	ENST00000407625.1,ENST00000420135.2	chr2	24357988:24358057:24360778:24360970:24362239:24362320,	24360779	24360970	24360947	24360947	Frame_Shift_Del	T	-	p.F113fs
LIHC	TCGA-DD-A39Y-01	ITSN2	ENST00000361999.3	chr2	24494673:24494810:24498581:24498718:24509080:24509220,	24498582	24498718	24498606	24498606	Frame_Shift_Del	T	-	p.K687fs
LIHC	TCGA-DD-A39Y-01	ITSN2	ENST00000361999.3	chr2	24498581:24498718:24509080:24509220:24516556:24516644,	24509081	24509220	24509192	24509192	Frame_Shift_Del	T	-	p.K584fs
LIHC	TCGA-DD-A39Y-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4,ENST00000412011.1	chr2	24521533:24521683:24522777:24523040:24524022:24524108,	24522778	24523040	24522850	24522850	Frame_Shift_Del	T	-	p.K424fs
LIHC	TCGA-DD-A39Y-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24916120:24916216:24920526:24920667:24927954:24928102,	24920527	24920667	24920612	24920612	Frame_Shift_Del	T	-	p.A298fs
LIHC	TCGA-DD-A39Y-01	ADCY3	ENST00000606682.1,ENST00000260600.5,ENST00000405392.1	chr2	25057353:25057515:25057662:25057805:25059785:25059914,	25057663	25057805	25057751	25057751	Frame_Shift_Del	C	-	p.A573fs
LIHC	TCGA-DD-A39Y-01	DTNB	ENST00000405222.1,ENST00000479898.1,ENST00000481841.1,ENST00000545439.1,ENST00000482145.1,ENST00000398951.2,ENST00000356599.5,ENST00000496972.2,ENST00000407186.1	chr2	25611186:25611230:25650403:25650500:25655754:25655868,	25650404	25650500	25650461	25650461	Frame_Shift_Del	C	-	p.L499fs
LIHC	TCGA-DD-A39Y-01	DTNB	ENST00000405222.1,ENST00000407038.3,ENST00000545439.1,ENST00000485845.1,ENST00000398951.2,ENST00000288642.8,ENST00000356599.5,ENST00000406818.3,ENST00000407661.3,ENST00000496972.2,ENST00000407186.1,ENST00000404103.3	chr2	25754341:25754466:25799706:25799873:25803589:25803695,	25799707	25799873	25799825	25799825	Frame_Shift_Del	C	-	p.G253fs
LIHC	TCGA-DD-A39Y-01	HADHA	ENST00000380649.3	chr2	26420559:26420646:26424017:26424189:26426930:26427065,	26424018	26424189	26424096	26424096	Frame_Shift_Del	A	-	p.F438fs
LIHC	TCGA-DD-A39Y-01	HADHB	ENST00000494615.1,ENST00000537713.1,ENST00000317799.5,ENST00000405867.3,ENST00000545822.1	chr2	26507756:26507825:26508274:26508439:26512785:26512910,	26508275	26508439	26508357	26508357	Frame_Shift_Del	G	-	p.R436fs
LIHC	TCGA-DD-A39Y-01	SLC35F6	ENST00000344420.5	chr2	26997118:26997191:26997911:26998083:26998331:26998544,	26997912	26998083	26998038	26998038	Frame_Shift_Del	C	-	p.P94fs
LIHC	TCGA-DD-A39Y-01	CENPA	ENST00000419525.1	chr2	27014998:27015108:27015369:27015701:27016012:27016194,	27015370	27015701	27015659	27015659	Frame_Shift_Del	G	-	p.V82fs
LIHC	TCGA-DD-A39Y-01	CENPA	ENST00000460030.1,ENST00000335756.4,ENST00000472719.1	chr2	27014998:27015108:27015623:27015701:27016012:27016194,	27015624	27015701	27015659	27015659	Frame_Shift_Del	G	-	p.V82fs
LIHC	TCGA-DD-A39Y-01	TMEM214	ENST00000404032.3,ENST00000321326.7,ENST00000238788.9	chr2	27256005:27256034:27256934:27257134:27258002:27258153,	27256935	27257134	27257015	27257015	Frame_Shift_Del	C	-	p.P79fs
LIHC	TCGA-DD-A39Y-01	AGBL5	ENST00000360131.4	chr2	27291915:27291962:27292440:27292574:27292959:27293488,27291499:27291612:27292440:27292574:27292959:27293488,	27292441	27292574	27292551	27292551	Frame_Shift_Del	G	-	p.L822fs
LIHC	TCGA-DD-A39Y-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305819	27305819	Frame_Shift_Del	G	-	p.L460fs
LIHC	TCGA-DD-A39Y-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305898	27305898	Frame_Shift_Del	G	-	p.G487fs
LIHC	TCGA-DD-A39Y-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306019	27306019	Frame_Shift_Del	C	-	p.A527fs
LIHC	TCGA-DD-A39Y-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000430533.1,ENST00000468045.1	chr2	27354877:27354950:27355097:27355271:27355470:27355488,	27355098	27355271	27355168	27355168	Frame_Shift_Del	C	-	p.D286fs
LIHC	TCGA-DD-A39Y-01	SLC30A3	ENST00000233535.4,ENST00000445870.1	chr2	27481028:27481175:27481620:27481802:27485679:27485739,	27481621	27481802	27481720	27481720	Frame_Shift_Del	G	-	p.L60fs
LIHC	TCGA-DD-A39Y-01	MPV17	ENST00000405983.1	chr2	27535546:27535639:27535860:27536021:27545314:27545389,	27535861	27536021	27535984	27535984	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-DD-A39Y-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27556840:27556866:27558464:27558573:27558783:27558895,	27558465	27558573	27558558	27558558	Frame_Shift_Del	G	-	p.R495fs
LIHC	TCGA-DD-A39Y-01	GTF3C2	ENST00000264720.3	chr2	27565857:27566014:27566174:27566445:27579605:27579634,	27566175	27566445	27566327	27566327	Frame_Shift_Del	T	-	p.N32fs
LIHC	TCGA-DD-A39Y-01	EIF2B4	ENST00000347454.4,ENST00000451130.2,ENST00000417567.1,ENST00000405940.2,ENST00000445933.2,ENST00000493344.2	chr2	27590323:27590426:27590612:27590689:27590891:27590980,	27590613	27590689	27590621	27590621	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-DD-A39Y-01	SNX17	ENST00000233575.2,ENST00000464279.1	chr2	27593531:27593673:27595489:27595607:27596113:27596178,27594135:27594210:27595489:27595607:27595906:27595971,27594135:27594210:27595489:27595607:27596113:27596155,	27595490	27595607	27595528	27595528	Frame_Shift_Del	C	-	p.F59fs
LIHC	TCGA-DD-A39Y-01	PPM1G	ENST00000350803.4	chr2	27609060:27609146:27609955:27610025:27632169:27632377,	27609956	27610025	27609977	27609977	Frame_Shift_Del	A	-	p.S57fs
LIHC	TCGA-DD-A39Y-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658018	27658018	Frame_Shift_Del	C	-	p.D195fs
LIHC	TCGA-DD-A39Y-01	SLC4A1AP	ENST00000326019.6	chr2	27910800:27910887:27911566:27911634:27916551:27916621,	27911567	27911634	27911608	27911608	Frame_Shift_Del	A	-	p.K751fs
LIHC	TCGA-DD-A39Y-01	SPDYA	ENST00000334056.5,ENST00000379579.4	chr2	29052015:29052185:29063037:29063335:29072715:29073300,	29063038	29063335	29063182	29063182	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-DD-A39Y-01	TRMT61B	ENST00000439947.1	chr2	29073193:29073271:29075273:29075365:29083983:29084174,	29075274	29075365	29075346	29075346	Frame_Shift_Del	T	-	p.N338fs
LIHC	TCGA-DD-A39Y-01	CAPN14	ENST00000444918.2,ENST00000403897.3,ENST00000398824.2	chr2	31399891:31400008:31400611:31400687:31401376:31401445,	31400612	31400687	31400647	31400647	Frame_Shift_Del	T	-	p.N607fs
LIHC	TCGA-DD-A39Y-01	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32341187:32341281:32352016:32352091:32353476:32353548,	32352017	32352091	32352071	32352071	Frame_Shift_Del	G	-	p.G385fs
LIHC	TCGA-DD-A39Y-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32474849	32474849	Frame_Shift_Del	T	-	p.K695fs
LIHC	TCGA-DD-A39Y-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475812	32475812	Frame_Shift_Del	T	-	p.N374fs
LIHC	TCGA-DD-A39Y-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476339	32476339	Frame_Shift_Del	T	-	p.K198fs
LIHC	TCGA-DD-A39Y-01	YIPF4	ENST00000238831.4	chr2	32515558:32515705:32517245:32517417:32523302:32523380,	32517246	32517417	32517380	32517380	Frame_Shift_Del	T	-	p.L123fs
LIHC	TCGA-DD-A39Y-01	YIPF4	ENST00000238831.4,ENST00000437765.1	chr2	32523302:32523380:32526450:32526564:32530557:32530935,	32526451	32526564	32526490	32526490	Frame_Shift_Del	T	-	p.L176fs
LIHC	TCGA-DD-A39Y-01	BIRC6	ENST00000421745.2	chr2	32690132:32690232:32692592:32692807:32692970:32693179,	32692593	32692807	32692618	32692618	Frame_Shift_Del	T	-	p.D1794fs
LIHC	TCGA-DD-A39Y-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859037	32859037	Frame_Shift_Del	T	-	p.F121fs
LIHC	TCGA-DD-A39Y-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33500031:33500157:33500867:33500990:33505105:33505225,	33500868	33500990	33500926	33500926	Frame_Shift_Del	G	-	p.V976fs
LIHC	TCGA-DD-A39Y-01	RASGRP3	ENST00000437184.1,ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33745018:33745081:33745619:33745751:33747021:33747169,	33745620	33745751	33745718	33745718	Frame_Shift_Del	A	-	p.E112fs
LIHC	TCGA-DD-A39Y-01	RASGRP3	ENST00000407811.1	chr2	33759389:33759467:33764163:33764277:33768578:33768694,	33764164	33764277	33764200	33764200	Frame_Shift_Del	C	-	p.P401fs
LIHC	TCGA-DD-A39Y-01	RASGRP3	ENST00000403687.3,ENST00000402538.3	chr2	33759389:33759467:33764160:33764277:33768578:33768694,	33764161	33764277	33764200	33764200	Frame_Shift_Del	C	-	p.P401fs
LIHC	TCGA-DD-A39Y-01	CRIM1	ENST00000280527.2	chr2	36744469:36744685:36749234:36749456:36764494:36764689,	36749235	36749456	36749288	36749288	Frame_Shift_Del	A	-	p.K754fs
LIHC	TCGA-DD-A39Y-01	FEZ2	ENST00000451623.1,ENST00000405912.3,ENST00000379245.4	chr2	36810495:36810612:36818045:36818154:36825019:36825285,	36818046	36818154	36818049	36818049	Frame_Shift_Del	T	-	p.K124fs
LIHC	TCGA-DD-A39Y-01	VIT	ENST00000379241.3,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1,ENST00000404084.1	chr2	37032580:37032807:37035614:37036128:37041325:37041576,	37035615	37036128	37035992	37035992	Frame_Shift_Del	G	-	p.T589fs
LIHC	TCGA-DD-A39Y-01	STRN	ENST00000379213.2,ENST00000263918.4	chr2	37075471:37076768:37076856:37076943:37078142:37078250,	37076857	37076943	37076895	37076895	Frame_Shift_Del	A	-	p.L712fs
LIHC	TCGA-DD-A39Y-01	STRN	ENST00000263918.4	chr2	37111074:37111218:37113858:37113969:37121040:37121176,	37113859	37113969	37113870	37113870	Frame_Shift_Del	T	-	p.K344fs
LIHC	TCGA-DD-A39Y-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37232774:37232902:37234192:37234447:37235753:37235991,	37234193	37234447	37234290	37234290	Frame_Shift_Del	T	-	p.K1560fs
LIHC	TCGA-DD-A39Y-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37232774:37232902:37234192:37234447:37235753:37235991,	37234193	37234447	37234429	37234429	Frame_Shift_Del	G	-	p.P1514fs
LIHC	TCGA-DD-A39Y-01	GPATCH11	ENST00000409774.1,ENST00000608836.1	chr2	37315511:37315583:37316782:37317009:37317823:37317865,	37316783	37317009	37316982	37316982	Frame_Shift_Del	A	-	p.K83fs
LIHC	TCGA-DD-A39Y-01	QPCT	ENST00000469098.1,ENST00000537448.1,ENST00000404976.1,ENST00000338415.3,ENST00000444022.1	chr2	37596827:37596927:37599498:37599615:37599824:37599885,	37599499	37599615	37599603	37599603	Frame_Shift_Del	T	-	p.F310fs
LIHC	TCGA-DD-A39Y-01	ATL2	ENST00000539122.1,ENST00000378954.4,ENST00000402054.1,ENST00000405384.2,ENST00000452935.2	chr2	38523049:38523255:38525285:38525717:38526397:38526469,	38525286	38525717	38525617	38525617	Frame_Shift_Del	T	-	p.K434fs
LIHC	TCGA-DD-A39Y-01	DHX57	ENST00000452978.1	chr2	39025493:39025584:39029856:39030057:39033700:39033835,39025493:39025584:39029856:39030057:39040962:39041037,	39029857	39030057	39030009	39030009	Frame_Shift_Del	T	-	p.T1289fs
LIHC	TCGA-DD-A39Y-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39237724:39237844:39239266:39239489:39240600:39240704,	39239267	39239489	39239315	39239315	Frame_Shift_Del	G	-	p.P781fs
LIHC	TCGA-DD-A39Y-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39241007:39241130:39241905:39241987:39249710:39250366,	39241906	39241987	39241943	39241943	Frame_Shift_Del	A	-	p.C635fs
LIHC	TCGA-DD-A39Y-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39250286:39250366:39251150:39251278:39262352:39262451,	39251151	39251278	39251185	39251185	Frame_Shift_Del	T	-	p.I390fs
LIHC	TCGA-DD-A39Y-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39250286:39250366:39251150:39251278:39262352:39262451,	39251151	39251278	39251263	39251263	Frame_Shift_Del	T	-	p.S364fs
LIHC	TCGA-DD-A39Y-01	SOS1	ENST00000428721.2,ENST00000461545.1,ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39262352:39262451:39262530:39262641:39278284:39278428,	39262531	39262641	39262585	39262585	Frame_Shift_Del	A	-	p.F307fs
LIHC	TCGA-DD-A39Y-01	CDKL4	ENST00000378803.1,ENST00000395035.3	chr2	39440540:39440613:39452979:39453101:39456505:39456729,	39452980	39453101	39452983	39452983	Frame_Shift_Del	T	-	p.N96fs
LIHC	TCGA-DD-A39Y-01	MAP4K3	ENST00000341681.5,ENST00000437545.1,ENST00000263881.3,ENST00000429397.1	chr2	39570528:39570593:39583389:39583480:39605206:39605264,	39583390	39583480	39583449	39583449	Frame_Shift_Del	A	-	p.I63fs
LIHC	TCGA-DD-A39Y-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000510781.2,ENST00000403537.3,ENST00000505747.1,ENST00000454352.2	chr2	39997156:39997259:39998644:39998780:40006253:40006380,	39998645	39998780	39998752	39998752	Frame_Shift_Del	A	-	p.F52fs
LIHC	TCGA-DD-A39Y-01	THUMPD2	ENST00000530522.1	chr2	39997156:39997259:39998654:39998780:40006253:40006380,	39998655	39998780	39998752	39998752	Frame_Shift_Del	A	-	p.F52fs
LIHC	TCGA-DD-A39Y-01	SLC8A1	ENST00000405269.1,ENST00000402441.1,ENST00000408028.2,ENST00000406785.2,ENST00000406391.2	chr2	40401964:40401982:40404891:40404995:40405526:40405629,40401964:40401982:40404891:40404995:40655612:40657411,	40404892	40404995	40404914	40404914	Frame_Shift_Del	T	-	p.K630fs
LIHC	TCGA-DD-A39Y-01	EML4	ENST00000409040.1,ENST00000401738.3,ENST00000318522.5	chr2	42472644:42472827:42483640:42483770:42488260:42488434,	42483641	42483770	42483674	42483674	Frame_Shift_Del	C	-	p.S81fs
LIHC	TCGA-DD-A39Y-01	EML4	ENST00000401738.3	chr2	42491845:42491871:42492058:42492091:42507989:42508113,	42492059	42492091	42492077	42492077	Frame_Shift_Del	A	-	p.E229fs
LIHC	TCGA-DD-A39Y-01	EML4	ENST00000402711.2,ENST00000406175.3,ENST00000401738.3,ENST00000318522.5	chr2	42522520:42522656:42528380:42528532:42530243:42530369,	42528381	42528532	42528484	42528484	Frame_Shift_Del	A	-	p.R531fs
LIHC	TCGA-DD-A39Y-01	MTA3	ENST00000484780.1	chr2	42797576:42797644:42806246:42806340:42836597:42836628,42797576:42797644:42806246:42806340:42867312:42867376,	42806247	42806340	42806283	42806283	Frame_Shift_Del	T	-	p.F45fs
LIHC	TCGA-DD-A39Y-01	HAAO	ENST00000402698.2,ENST00000294973.6,ENST00000402268.1,ENST00000404451.3,ENST00000406924.2,ENST00000431905.1	chr2	43010453:43010560:43010923:43011007:43015668:43015747,	43010924	43011007	43010965	43010965	Frame_Shift_Del	C	-	p.E68fs
LIHC	TCGA-DD-A39Y-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44040367:44040448:44041615:44041728:44047053:44047239,	44041616	44041728	44041683	44041683	Frame_Shift_Del	A	-	p.F170fs
LIHC	TCGA-DD-A39Y-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44041615:44041728:44047053:44047239:44049935:44050074,	44047054	44047239	44047079	44047079	Frame_Shift_Del	C	-	p.V147fs
LIHC	TCGA-DD-A39Y-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44058907:44059006:44059085:44059222:44064972:44065094,	44059086	44059222	44059167	44059167	Frame_Shift_Del	C	-	p.G26fs
LIHC	TCGA-DD-A39Y-01	PREPL	ENST00000378511.3,ENST00000410081.1,ENST00000409411.1,ENST00000409272.1,ENST00000438314.1,ENST00000409957.1,ENST00000426481.1,ENST00000541738.1,ENST00000425263.1,ENST00000260648.6,ENST00000378520.3,ENST00000409936.1	chr2	44571046:44571090:44571658:44571725:44573406:44573520,	44571659	44571725	44571698	44571698	Frame_Shift_Del	G	-	p.Q35fs
LIHC	TCGA-DD-A39Y-01	CAMKMT	ENST00000454433.1,ENST00000403853.3,ENST00000378494.3,ENST00000407131.1	chr2	44589243:44589284:44599854:44600027:44617379:44617444,	44599855	44600027	44599909	44599909	Frame_Shift_Del	T	-	p.F65fs
LIHC	TCGA-DD-A39Y-01	SRBD1	ENST00000493649.1,ENST00000535761.1,ENST00000263736.4	chr2	45778263:45778421:45780761:45780869:45789791:45789895,	45780762	45780869	45780797	45780797	Frame_Shift_Del	T	-	p.K494fs
LIHC	TCGA-DD-A39Y-01	SRBD1	ENST00000493649.1,ENST00000535761.1,ENST00000263736.4	chr2	45778263:45778421:45780761:45780869:45789791:45789895,	45780762	45780869	45780810	45780810	Frame_Shift_Del	T	-	p.N490fs
LIHC	TCGA-DD-A39Y-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607749	46607749	Frame_Shift_Del	T	-	p.H646fs
LIHC	TCGA-DD-A39Y-01	TTC7A	ENST00000394850.2,ENST00000409245.1,ENST00000441914.1,ENST00000319190.5,ENST00000263737.6	chr2	47177559:47177665:47183977:47184146:47202111:47202242,	47183978	47184146	47184066	47184066	Frame_Shift_Del	G	-	p.R146fs
LIHC	TCGA-DD-A39Y-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639588	47639588	Frame_Shift_Del	A	-	p.R227fs
LIHC	TCGA-DD-A39Y-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693875	47693875	Frame_Shift_Del	A	-	p.E530fs
LIHC	TCGA-DD-A39Y-01	MSH6	ENST00000445503.1	chr2	48010308:48010632:48018065:48018262:48023032:48023175,48010308:48010632:48018065:48018262:48025749:48025766,	48018066	48018262	48018178	48018178	Frame_Shift_Del	A	-	p.K125fs
LIHC	TCGA-DD-A39Y-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026404	48026404	Frame_Shift_Del	A	-	p.K428fs
LIHC	TCGA-DD-A39Y-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026404	48026404	Frame_Shift_Del	A	-	p.K428fs
LIHC	TCGA-DD-A39Y-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1	chr2	48045917:48046003:48046094:48046217:48047500:48047595,	48046095	48046217	48046117	48046117	Frame_Shift_Del	T	-	p.N633fs
LIHC	TCGA-DD-A39Y-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8	chr2	48698449:48698506:48701821:48701958:48707062:48707155,	48701822	48701958	48701898	48701898	Frame_Shift_Del	A	-	p.K390fs
LIHC	TCGA-DD-A39Y-01	PPP1R21	ENST00000431614.1,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8,ENST00000455978.1	chr2	48713769:48713897:48718156:48718309:48725631:48725640,48713769:48713897:48718156:48718309:48722817:48722910,	48718157	48718309	48718274	48718274	Frame_Shift_Del	A	-	p.K523fs
LIHC	TCGA-DD-A39Y-01	PPP1R21	ENST00000431614.1,ENST00000416913.1,ENST00000294952.8	chr2	48722817:48722910:48725631:48725874:48732702:48732735,	48725632	48725874	48725707	48725707	Frame_Shift_Del	A	-	p.K590fs
LIHC	TCGA-DD-A39Y-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3,ENST00000476586.1,ENST00000488687.1	chr2	54093284:54093360:54093883:54094017:54096512:54096675,	54093884	54094017	54093967	54093967	Frame_Shift_Del	A	-	p.S1773fs
LIHC	TCGA-DD-A39Y-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54125437:54125491:54127017:54127154:54128486:54128696,	54127018	54127154	54127105	54127105	Frame_Shift_Del	T	-	p.N1112fs
LIHC	TCGA-DD-A39Y-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54128486:54128696:54131161:54131293:54133734:54133830,	54131162	54131293	54131211	54131211	Frame_Shift_Del	A	-	p.L1009fs
LIHC	TCGA-DD-A39Y-01	C2orf73	ENST00000317627.5	chr2	54558123:54558138:54570856:54571010:54586095:54586211,	54570857	54571010	54570942	54570942	Frame_Shift_Del	A	-	p.Q107fs
LIHC	TCGA-DD-A39Y-01	C2orf73	ENST00000486488.1,ENST00000398634.2,ENST00000447328.1,ENST00000317627.5	chr2	54570856:54571010:54586095:54586211:54587339:54587408,	54586096	54586211	54586157	54586157	Frame_Shift_Del	T	-	p.S150fs
LIHC	TCGA-DD-A39Y-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000389980.3	chr2	54845214:54845330:54848536:54848649:54849436:54849624,	54848537	54848649	54848634	54848634	Frame_Shift_Del	A	-	p.G274fs
LIHC	TCGA-DD-A39Y-01	SPTBN1	ENST00000356805.4	chr2	54886290:54886403:54887072:54887136:54891589:54891828,	54887073	54887136	54887120	54887120	Frame_Shift_Del	A	-	p.E2122fs
LIHC	TCGA-DD-A39Y-01	EML6	ENST00000356458.6	chr2	55122409:55122537:55126777:55126919:55130180:55130333,	55126778	55126919	55126800	55126800	Frame_Shift_Del	G	-	p.W1002fs
LIHC	TCGA-DD-A39Y-01	RTN4	ENST00000354474.6,ENST00000317610.7,ENST00000438462.1,ENST00000357732.4,ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000394609.2,ENST00000357376.3,ENST00000402434.2,ENST00000337526.6	chr2	55200956:55201003:55201830:55201900:55209650:55209789,	55201831	55201900	55201854	55201854	Frame_Shift_Del	T	-	p.N1136fs
LIHC	TCGA-DD-A39Y-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252295	55252295	Frame_Shift_Del	T	-	p.K980fs
LIHC	TCGA-DD-A39Y-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253228	55253228	Frame_Shift_Del	T	-	p.K669fs
LIHC	TCGA-DD-A39Y-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253746	55253746	Frame_Shift_Del	T	-	p.I497fs
LIHC	TCGA-DD-A39Y-01	MTIF2	ENST00000417741.1	chr2	55481176:55481337:55481789:55481961:55489451:55489563,55479711:55479789:55481789:55481961:55489451:55489563,	55481790	55481961	55481808	55481808	Frame_Shift_Del	T	-	p.N162fs
LIHC	TCGA-DD-A39Y-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55563816:55563954:55566599:55566784:55570783:55570928,	55566600	55566784	55566632	55566632	Frame_Shift_Del	T	-	p.M496fs
LIHC	TCGA-DD-A39Y-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2	chr2	55883439:55883506:55887291:55887328:55889090:55889161,	55887292	55887328	55887319	55887319	Frame_Shift_Del	T	-	p.K419fs
LIHC	TCGA-DD-A39Y-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2	chr2	55899129:55899181:55900027:55900214:55906816:55906930,	55900028	55900214	55900170	55900170	Frame_Shift_Del	A	-	p.C242fs
LIHC	TCGA-DD-A39Y-01	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58311223:58311273:58312015:58312085:58313473:58313561,	58312016	58312085	58312061	58312061	Frame_Shift_Del	C	-	p.Q78fs
LIHC	TCGA-DD-A39Y-01	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58312015:58312085:58313473:58313561:58315475:58315581,	58313474	58313561	58313524	58313524	Frame_Shift_Del	T	-	p.F103fs
LIHC	TCGA-DD-A39Y-01	PAPOLG	ENST00000496283.1,ENST00000238714.3,ENST00000414060.1,ENST00000453839.1	chr2	60988875:60988942:60995604:60995686:60995915:60996025,	60995605	60995686	60995625	60995625	Frame_Shift_Del	G	-	p.V89fs
LIHC	TCGA-DD-A39Y-01	PAPOLG	ENST00000238714.3,ENST00000414060.1	chr2	60997592:60997646:60998653:60998765:61002168:61002258,	60998654	60998765	60998701	60998701	Frame_Shift_Del	T	-	p.N180fs
LIHC	TCGA-DD-A39Y-01	PAPOLG	ENST00000496283.1,ENST00000238714.3,ENST00000412217.1,ENST00000414060.1	chr2	61014081:61014201:61014645:61014755:61018895:61019017,	61014646	61014755	61014681	61014681	Frame_Shift_Del	T	-	p.I441fs
LIHC	TCGA-DD-A39Y-01	USP34	ENST00000411912.1,ENST00000398571.2	chr2	61438906:61439064:61441194:61441829:61447444:61447503,	61441195	61441829	61441483	61441483	Frame_Shift_Del	T	-	p.K2798fs
LIHC	TCGA-DD-A39Y-01	USP34	ENST00000453734.1,ENST00000411912.1,ENST00000398571.2	chr2	61463160:61463208:61463295:61463371:61463459:61463524,	61463296	61463371	61463320	61463320	Frame_Shift_Del	T	-	p.K2298fs
LIHC	TCGA-DD-A39Y-01	USP34	ENST00000398571.2	chr2	61510279:61510404:61510543:61510584:61512009:61512092,	61510544	61510584	61510575	61510575	Frame_Shift_Del	T	-	p.K1614fs
LIHC	TCGA-DD-A39Y-01	XPO1	ENST00000428210.1,ENST00000481073.1,ENST00000406957.1,ENST00000401558.2,ENST00000404992.2	chr2	61708319:61708416:61709514:61709674:61710091:61710226,	61709515	61709674	61709573	61709573	Frame_Shift_Del	T	-	p.I972fs
LIHC	TCGA-DD-A39Y-01	XPO1	ENST00000428210.1,ENST00000481073.1,ENST00000406957.1,ENST00000401558.2,ENST00000404992.2	chr2	61708319:61708416:61709514:61709674:61710091:61710226,	61709515	61709674	61709632	61709632	Frame_Shift_Del	A	-	p.L952fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62066725	62066725	Frame_Shift_Del	T	-	p.I472fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62066725	62066725	Frame_Shift_Del	T	-	p.I472fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62066918	62066918	Frame_Shift_Del	C	-	p.R407fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62066918	62066918	Frame_Shift_Del	C	-	p.R407fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067194	62067194	Frame_Shift_Del	T	-	p.K315fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067194	62067194	Frame_Shift_Del	T	-	p.K315fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067230	62067230	Frame_Shift_Del	T	-	p.K303fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067230	62067230	Frame_Shift_Del	T	-	p.K303fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067326	62067326	Frame_Shift_Del	T	-	p.K271fs
LIHC	TCGA-DD-A39Y-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067326	62067326	Frame_Shift_Del	T	-	p.K271fs
LIHC	TCGA-DD-A39Y-01	CCT4	ENST00000538252.1,ENST00000394440.3,ENST00000544079.1,ENST00000544185.1	chr2	62099216:62099451:62099592:62099723:62100136:62100247,	62099593	62099723	62099655	62099655	Frame_Shift_Del	A	-	p.I398fs
LIHC	TCGA-DD-A39Y-01	CCT4	ENST00000538252.1,ENST00000394440.3,ENST00000544079.1,ENST00000544185.1	chr2	62096574:62096688:62103229:62103369:62104054:62104161,62100331:62100428:62103229:62103369:62104054:62104161,	62103230	62103369	62103296	62103296	Frame_Shift_Del	A	-	p.L284fs
LIHC	TCGA-DD-A39Y-01	COMMD1	ENST00000311832.5	chr2	62132892:62132993:62227835:62228117:62362965:62363114,	62227836	62228117	62227896	62227896	Frame_Shift_Del	A	-	p.K82fs
LIHC	TCGA-DD-A39Y-01	COMMD1	ENST00000311832.5	chr2	62132892:62132993:62227835:62228117:62362965:62363114,	62227836	62228117	62227964	62227964	Frame_Shift_Del	A	-	p.T103fs
LIHC	TCGA-DD-A39Y-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63175997	63175997	Frame_Shift_Del	G	-	p.K707fs
LIHC	TCGA-DD-A39Y-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176136	63176136	Frame_Shift_Del	A	-	p.K755fs
LIHC	TCGA-DD-A39Y-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176147	63176147	Frame_Shift_Del	T	-	p.S757fs
LIHC	TCGA-DD-A39Y-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176205	63176205	Frame_Shift_Del	A	-	p.K778fs
LIHC	TCGA-DD-A39Y-01	EHBP1	ENST00000431489.1,ENST00000444311.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63176228:63176297:63182651:63182795:63206322:63206421,	63182652	63182795	63182767	63182767	Frame_Shift_Del	C	-	p.T846fs
LIHC	TCGA-DD-A39Y-01	WDPCP	ENST00000409562.3,ENST00000272321.7,ENST00000493315.1,ENST00000409835.1,ENST00000417238.1	chr2	63664590:63664688:63666890:63667005:63711737:63711797,	63666891	63667005	63667002	63667002	Frame_Shift_Del	G	-	p.L130fs
LIHC	TCGA-DD-A39Y-01	WDPCP	ENST00000490935.1	chr2	63711737:63711797:63712050:63712121:63713675:63713720,63711737:63711797:63712050:63712121:63714580:63714628,	63712051	63712121	63712094	63712094	Frame_Shift_Del	T	-	p.N94fs
LIHC	TCGA-DD-A39Y-01	WDPCP	ENST00000409562.3,ENST00000272321.7,ENST00000418148.1,ENST00000409835.1,ENST00000417238.1	chr2	63712075:63712121:63713675:63713720:63714580:63714628,	63713676	63713720	63713696	63713696	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-DD-A39Y-01	UGP2	ENST00000467648.2,ENST00000337130.5,ENST00000445915.2,ENST00000394417.2	chr2	64113474:64113672:64114535:64114778:64117214:64117319,	64114536	64114778	64114654	64114654	Frame_Shift_Del	C	-	p.T398fs
LIHC	TCGA-DD-A39Y-01	VPS54	ENST00000354504.3,ENST00000409558.4,ENST00000272322.4	chr2	64139673:64139795:64140356:64140444:64141315:64141421,	64140357	64140444	64140378	64140378	Frame_Shift_Del	T	-	p.T648fs
LIHC	TCGA-DD-A39Y-01	VPS54	ENST00000272322.4	chr2	64199299:64199378:64208779:64209021:64210997:64211153,	64208780	64209021	64208905	64208905	Frame_Shift_Del	T	-	p.R85fs
LIHC	TCGA-DD-A39Y-01	VPS54	ENST00000409558.4	chr2	64199299:64199378:64208779:64208985:64210997:64211153,	64208780	64208985	64208905	64208905	Frame_Shift_Del	T	-	p.R85fs
LIHC	TCGA-DD-A39Y-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64779570	64779570	Frame_Shift_Del	A	-	p.Q322fs
LIHC	TCGA-DD-A39Y-01	MEIS1	ENST00000272369.9,ENST00000407092.2,ENST00000488550.1,ENST00000560281.2	chr2	66662689:66663000:66664868:66665095:66666974:66667099,	66664869	66665095	66664881	66664881	Frame_Shift_Del	C	-	p.P9fs
LIHC	TCGA-DD-A39Y-01	MEIS1	ENST00000272369.9,ENST00000407092.2,ENST00000488550.1,ENST00000560281.2	chr2	66662689:66663000:66664868:66665095:66666974:66667099,	66664869	66665095	66664890	66664890	Frame_Shift_Del	G	-	p.G13fs
LIHC	TCGA-DD-A39Y-01	C1D	ENST00000410067.3,ENST00000409302.1,ENST00000407324.1,ENST00000355848.3	chr2	68273119:68273175:68273475:68273542:68274304:68274447,	68273476	68273542	68273519	68273519	Frame_Shift_Del	T	-	p.K54fs
LIHC	TCGA-DD-A39Y-01	APLF	ENST00000445692.1,ENST00000529851.1,ENST00000303795.4	chr2	68729862:68730035:68740211:68740359:68740679:68740812,	68740212	68740359	68740257	68740257	Frame_Shift_Del	A	-	p.P129fs
LIHC	TCGA-DD-A39Y-01	APLF	ENST00000445692.1,ENST00000529851.1,ENST00000303795.4	chr2	68729862:68730035:68740211:68740359:68740679:68740812,	68740212	68740359	68740262	68740262	Frame_Shift_Del	C	-	p.S131fs
LIHC	TCGA-DD-A39Y-01	GKN2	ENST00000328895.4,ENST00000481498.1	chr2	69174278:69174389:69177257:69177395:69177833:69177887,	69177258	69177395	69177322	69177322	Frame_Shift_Del	T	-	p.N47fs
LIHC	TCGA-DD-A39Y-01	AAK1	ENST00000409068.1,ENST00000406297.3,ENST00000409085.4	chr2	69747965:69748120:69752164:69752244:69754347:69754451,	69752165	69752244	69752183	69752183	Frame_Shift_Del	T	-	p.K346fs
LIHC	TCGA-DD-A39Y-01	GMCL1	ENST00000282570.3,ENST00000471404.1	chr2	70074674:70074759:70076783:70076874:70081954:70081992,	70076784	70076874	70076842	70076842	Frame_Shift_Del	A	-	p.E301fs
LIHC	TCGA-DD-A39Y-01	MPHOSPH10	ENST00000244230.2	chr2	71361755:71361927:71365619:71365761:71366924:71366992,	71365620	71365761	71365627	71365627	Frame_Shift_Del	A	-	p.E369fs
LIHC	TCGA-DD-A39Y-01	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71577092	71577092	Frame_Shift_Del	T	-	p.P336fs
LIHC	TCGA-DD-A39Y-01	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71577092	71577092	Frame_Shift_Del	T	-	p.P336fs
LIHC	TCGA-DD-A39Y-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650533	71650533	Frame_Shift_Del	A	-	p.K1298fs
LIHC	TCGA-DD-A39Y-01	ZNF638	ENST00000493576.2	chr2	71654479:71654544:71658456:71658558:71660294:71660413,	71658457	71658558	71658531	71658531	Frame_Shift_Del	A	-	p.K1909fs
LIHC	TCGA-DD-A39Y-01	SMYD5	ENST00000389501.4	chr2	73450553:73450660:73451074:73451131:73451993:73452088,	73451075	73451131	73451086	73451086	Frame_Shift_Del	T	-	p.F299fs
LIHC	TCGA-DD-A39Y-01	CCT7	ENST00000398422.2,ENST00000258091.5,ENST00000540468.1,ENST00000538797.1,ENST00000539919.1,ENST00000473786.1,ENST00000537131.1	chr2	73474889:73475054:73476118:73476307:73476946:73476972,	73476119	73476307	73476214	73476214	Frame_Shift_Del	C	-	p.L249fs
LIHC	TCGA-DD-A39Y-01	FBXO41	ENST00000520530.2,ENST00000521871.1,ENST00000295133.5	chr2	73490340:73490436:73490805:73490958:73491065:73491181,	73490806	73490958	73490910	73490910	Frame_Shift_Del	C	-	p.G657fs
LIHC	TCGA-DD-A39Y-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677033	73677033	Frame_Shift_Del	C	-	p.P1126fs
LIHC	TCGA-DD-A39Y-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73680278	73680278	Frame_Shift_Del	T	-	p.N2207fs
LIHC	TCGA-DD-A39Y-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6,ENST00000464408.2	chr2	73827961:73828008:73828321:73828563:73829311:73829495,	73828322	73828563	73828346	73828346	Frame_Shift_Del	A	-	p.E3965fs
LIHC	TCGA-DD-A39Y-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6,ENST00000464408.2	chr2	73827961:73828008:73828321:73828563:73829311:73829495,	73828322	73828563	73828373	73828373	Frame_Shift_Del	A	-	p.E3974fs
LIHC	TCGA-DD-A39Y-01	INO80B	ENST00000494986.1	chr2	74682618:74682725:74682928:74683063:74683229:74683399,	74682929	74683063	74683035	74683035	Frame_Shift_Del	C	-	p.V114fs
LIHC	TCGA-DD-A39Y-01	INO80B	ENST00000471577.1,ENST00000409917.1,ENST00000452361.1,ENST00000409493.2,ENST00000473618.1,ENST00000441673.1,ENST00000233331.7	chr2	74682618:74682725:74682944:74683063:74683229:74683399,	74682945	74683063	74683035	74683035	Frame_Shift_Del	C	-	p.V114fs
LIHC	TCGA-DD-A39Y-01	INO80B	ENST00000455562.1	chr2	74682618:74682725:74682944:74683077:74683229:74683399,	74682945	74683077	74683035	74683035	Frame_Shift_Del	C	-	p.V114fs
LIHC	TCGA-DD-A39Y-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755543:74755616:74755877:74756062:74756258:74756409,	74755878	74756062	74756042	74756042	Frame_Shift_Del	G	-	p.P120fs
LIHC	TCGA-DD-A39Y-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74756042	74756042	Frame_Shift_Del	G	-	p.P120fs
LIHC	TCGA-DD-A39Y-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755948:74756062:74756258:74756409:74756488:74756626,	74756259	74756409	74756376	74756376	Frame_Shift_Del	C	-	p.G74fs
LIHC	TCGA-DD-A39Y-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74756376	74756376	Frame_Shift_Del	C	-	p.G74fs
LIHC	TCGA-DD-A39Y-01	M1AP	ENST00000358434.2,ENST00000409585.1,ENST00000290536.5,ENST00000536235.1	chr2	74803582:74803745:74808800:74808974:74834181:74834350,	74808801	74808974	74808898	74808898	Frame_Shift_Del	T	-	p.K224fs
LIHC	TCGA-DD-A39Y-01	SEMA4F	ENST00000357877.2,ENST00000420077.1,ENST00000446927.1,ENST00000339773.5	chr2	74902049:74902162:74902288:74902511:74902651:74902761,	74902289	74902511	74902322	74902322	Frame_Shift_Del	G	-	p.G395fs
LIHC	TCGA-DD-A39Y-01	MRPL19	ENST00000409374.1	chr2	75882025:75882043:75882189:75882428:75897704:75897879,	75882190	75882428	75882240	75882240	Frame_Shift_Del	A	-	p.P236fs
LIHC	TCGA-DD-A39Y-01	SUCLG1	ENST00000487809.1,ENST00000393868.2	chr2	84652538:84652727:84658631:84658783:84660475:84660559,	84658632	84658783	84658648	84658648	Frame_Shift_Del	A	-	p.L270fs
LIHC	TCGA-DD-A39Y-01	SUCLG1	ENST00000393868.2	chr2	84658631:84658783:84660475:84660559:84668170:84668216,	84660476	84660559	84660512	84660512	Frame_Shift_Del	T	-	p.T214fs
LIHC	TCGA-DD-A39Y-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84756027:84756290:84771356:84771624:84774391:84774526,	84771357	84771624	84771425	84771425	Frame_Shift_Del	T	-	p.I244fs
LIHC	TCGA-DD-A39Y-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84756027:84756290:84771356:84771624:84774391:84774526,	84771357	84771624	84771566	84771566	Frame_Shift_Del	C	-	p.S291fs
LIHC	TCGA-DD-A39Y-01	DNAH6	ENST00000398278.2,ENST00000602588.1	chr2	84908480:84908652:84913607:84913681:84915562:84915717,	84913608	84913681	84913642	84913642	Frame_Shift_Del	T	-	p.Y2366fs
LIHC	TCGA-DD-A39Y-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	84931190:84931426:84932609:84932871:84934019:84934143,	84932610	84932871	84932750	84932750	Frame_Shift_Del	A	-	p.E2869fs
LIHC	TCGA-DD-A39Y-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	84936466:84936670:84937410:84937536:84940218:84940383,	84937411	84937536	84937466	84937466	Frame_Shift_Del	T	-	p.L3103fs
LIHC	TCGA-DD-A39Y-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	85040181:85040254:85041094:85041246:85042984:85043207,	85041095	85041246	85041117	85041117	Frame_Shift_Del	A	-	p.R4007fs
LIHC	TCGA-DD-A39Y-01	TRABD2A	ENST00000496500.1,ENST00000409520.2,ENST00000335459.5,ENST00000479944.1	chr2	85049065:85049224:85051076:85051328:85059178:85059269,	85051077	85051328	85051207	85051207	Frame_Shift_Del	G	-	p.L353fs
LIHC	TCGA-DD-A39Y-01	CAPG	ENST00000449030.1,ENST00000409724.1,ENST00000409670.1,ENST00000263867.4,ENST00000447219.2,ENST00000483659.1,ENST00000459793.2,ENST00000409275.1,ENST00000439385.1,ENST00000409921.1	chr2	85626357:85626408:85628287:85628452:85628651:85628711,	85628288	85628452	85628372	85628372	Frame_Shift_Del	C	-	p.G144fs
LIHC	TCGA-DD-A39Y-01	VAMP8	ENST00000263864.5	chr2	85804715:85804772:85806131:85806290:85808698:85808728,	85806132	85806290	85806162	85806181	Frame_Shift_Del	CGTGTGCGGAACCTGCAAAG	-	p.RVRNLQS12fs
LIHC	TCGA-DD-A39Y-01	SFTPB	ENST00000409383.1,ENST00000428225.1	chr2	85886789:85886805:85888576:85888658:85889151:85889232,85885894:85885978:85888576:85888658:85889151:85889232,	85888577	85888658	85888649	85888649	Frame_Shift_Del	C	-	p.V377fs
LIHC	TCGA-DD-A39Y-01	ST3GAL5	ENST00000393805.1,ENST00000377332.3,ENST00000393808.3	chr2	86071518:86071677:86073499:86073686:86074983:86075327,	86073500	86073686	86073637	86073637	Frame_Shift_Del	T	-	p.T239fs
LIHC	TCGA-DD-A39Y-01	ST3GAL5	ENST00000393805.1,ENST00000377332.3,ENST00000393808.3	chr2	86073616:86073686:86074983:86075327:86088303:86088415,	86074984	86075327	86075118	86075118	Frame_Shift_Del	T	-	p.E176fs
LIHC	TCGA-DD-A39Y-01	ST3GAL5	ENST00000306262.5	chr2	86073616:86073686:86074983:86075504:86088303:86088415,	86074984	86075504	86075118	86075118	Frame_Shift_Del	T	-	p.E176fs
LIHC	TCGA-DD-A39Y-01	POLR1A	ENST00000486964.1,ENST00000409681.1	chr2	86325733:86325883:86327090:86327295:86332822:86332996,	86327091	86327295	86327215	86327215	Frame_Shift_Del	A	-	p.L53fs
LIHC	TCGA-DD-A39Y-01	KDM3A	ENST00000441719.1,ENST00000312912.5,ENST00000427678.1,ENST00000409556.1,ENST00000409064.1,ENST00000452034.1	chr2	86669170:86669356:86676929:86677085:86678225:86678246,	86676930	86677085	86676942	86676942	Frame_Shift_Del	T	-	p.F67fs
LIHC	TCGA-DD-A39Y-01	RMND5A	ENST00000283632.4	chr2	86980580:86980681:86992149:86992316:86992981:86993147,	86992150	86992316	86992185	86992185	Frame_Shift_Del	A	-	p.Q186fs
LIHC	TCGA-DD-A39Y-01	CD8A	ENST00000409511.2,ENST00000538832.1,ENST00000283635.3	chr2	87015652:87015683:87016445:87016556:87016762:87016873,	87016446	87016556	87016498	87016498	Frame_Shift_Del	C	-	p.G191fs
LIHC	TCGA-DD-A39Y-01	SMYD1	ENST00000444564.2	chr2	88367380:88367520:88383834:88384011:88387380:88387594,	88383835	88384011	88383844	88383844	Frame_Shift_Del	T	-	p.N49fs
LIHC	TCGA-DD-A39Y-01	FABP1	ENST00000393750.3	chr2	88424012:88424105:88425694:88425867:88427469:88427560,	88425695	88425867	88425706	88425706	Frame_Shift_Del	C	-	p.E77fs
LIHC	TCGA-DD-A39Y-01	FABP1	ENST00000393750.3	chr2	88424012:88424105:88425694:88425867:88427469:88427560,	88425695	88425867	88425823	88425823	Frame_Shift_Del	C	-	p.V38fs
LIHC	TCGA-DD-A39Y-01	THNSL2	ENST00000324166.5,ENST00000377254.3,ENST00000343544.4,ENST00000449349.1,ENST00000496844.1,ENST00000402102.1,ENST00000358591.2	chr2	88474326:88474352:88474767:88474920:88478301:88478532,	88474768	88474920	88474914	88474914	Frame_Shift_Del	T	-	p.F189fs
LIHC	TCGA-DD-A39Y-01	EIF2AK3	ENST00000415570.1,ENST00000303236.3,ENST00000419748.1	chr2	88858434:88858497:88861806:88861908:88870391:88870559,	88861807	88861908	88861849	88861849	Frame_Shift_Del	A	-	p.F1015fs
LIHC	TCGA-DD-A39Y-01	EIF2AK3	ENST00000303236.3,ENST00000419748.1	chr2	88892789:88892923:88894986:88895181:88913241:88913371,	88894987	88895181	88895139	88895139	Frame_Shift_Del	G	-	p.L161fs
LIHC	TCGA-DD-A39Y-01	PROM2	ENST00000431567.1,ENST00000403131.2,ENST00000317620.9,ENST00000463580.1,ENST00000317668.4,ENST00000542147.1	chr2	95942380:95942405:95942719:95942809:95943111:95943244,	95942720	95942809	95942768	95942768	Frame_Shift_Del	C	-	p.S244fs
LIHC	TCGA-DD-A39Y-01	PROM2	ENST00000487138.1,ENST00000431567.1,ENST00000403131.2,ENST00000317620.9,ENST00000317668.4,ENST00000542147.1	chr2	95952880:95952961:95953143:95953212:95953958:95954048,	95953144	95953212	95953184	95953184	Frame_Shift_Del	C	-	p.S739fs
LIHC	TCGA-DD-A39Y-01	SNRNP200	ENST00000323853.5,ENST00000349783.5	chr2	96963374:96963458:96964021:96964158:96964340:96964440,	96964022	96964158	96964113	96964113	Frame_Shift_Del	T	-	p.K343fs
LIHC	TCGA-DD-A39Y-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025984	97025984	Frame_Shift_Del	A	-	p.T476fs
LIHC	TCGA-DD-A39Y-01	KANSL3	ENST00000354204.6,ENST00000597150.1,ENST00000599854.1,ENST00000441706.2,ENST00000452268.1,ENST00000420155.1,ENST00000447759.1,ENST00000440133.1,ENST00000431828.1,ENST00000448075.1,ENST00000418735.1,ENST00000444759.1	chr2	97278611:97278671:97279224:97279356:97285095:97285281,	97279225	97279356	97279239	97279239	Frame_Shift_Del	A	-	p.S174fs
LIHC	TCGA-DD-A39Y-01	CNNM3	ENST00000305510.3	chr2	97481986:97483239:97490794:97490938:97492569:97492646,	97490795	97490938	97490876	97490876	Frame_Shift_Del	C	-	p.T436fs
LIHC	TCGA-DD-A39Y-01	FAM178B	ENST00000490605.2,ENST00000520074.1,ENST00000417561.3,ENST00000478671.2,ENST00000327896.3	chr2	97589305:97589320:97594942:97595057:97613554:97613639,	97594943	97595057	97594963	97594963	Frame_Shift_Del	C	-	p.G539fs
LIHC	TCGA-DD-A39Y-01	TMEM131	ENST00000186436.5	chr2	98435075:98435184:98449827:98449889:98451083:98451140,	98449828	98449889	98449874	98449874	Frame_Shift_Del	A	-	p.L343fs
LIHC	TCGA-DD-A39Y-01	TMEM131	ENST00000425805.2,ENST00000418629.2,ENST00000438715.1,ENST00000186436.5	chr2	98458277:98458400:98460607:98460724:98475766:98475890,	98460608	98460724	98460648	98460648	Frame_Shift_Del	A	-	p.L187fs
LIHC	TCGA-DD-A39Y-01	INPP4A	ENST00000409851.3,ENST00000523221.1,ENST00000074304.5	chr2	99172015:99172154:99175925:99175958:99179927:99180100,99172015:99172271:99175925:99175958:99179927:99180100,	99175926	99175958	99175934	99175934	Frame_Shift_Del	C	-	p.P618fs
LIHC	TCGA-DD-A39Y-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232757	99232757	Frame_Shift_Del	T	-	p.A180fs
LIHC	TCGA-DD-A39Y-01	KIAA1211L	ENST00000462314.1	chr2	99443450:99443632:99448810:99448975:99454581:99454750,	99448811	99448975	99448857	99448857	Frame_Shift_Del	G	-	p.P165fs
LIHC	TCGA-DD-A39Y-01	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651852	99651852	Frame_Shift_Del	T	-	p.K485fs
LIHC	TCGA-DD-A39Y-01	TSGA10	ENST00000542655.1	chr2	99689480:99689536:99695121:99695276:99697744:99697860,99688268:99688337:99695121:99695276:99697744:99697860,	99695122	99695276	99695164	99695164	Frame_Shift_Del	T	-	p.K280fs
LIHC	TCGA-DD-A39Y-01	LYG1	ENST00000308528.4,ENST00000409448.1	chr2	99901150:99901283:99907699:99907884:99908998:99909103,	99907700	99907884	99907855	99907855	Frame_Shift_Del	T	-	p.I60fs
LIHC	TCGA-DD-A39Y-01	EIF5B	ENST00000289371.6	chr2	100006681:100006864:100007006:100007168:100009429:100009561,	100007007	100007168	100007067	100007067	Frame_Shift_Del	A	-	p.K883fs
LIHC	TCGA-DD-A39Y-01	AFF3	ENST00000356421.2,ENST00000445815.1,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2	chr2	100175336:100175430:100176826:100176898:100181948:100182085,	100176827	100176898	100176879	100176879	Frame_Shift_Del	T	-	p.T1047fs
LIHC	TCGA-DD-A39Y-01	LONRF2	ENST00000393437.3,ENST00000409647.1	chr2	100911893:100912015:100915297:100915412:100915687:100915781,	100915298	100915412	100915332	100915332	Frame_Shift_Del	G	-	p.P481fs
LIHC	TCGA-DD-A39Y-01	LONRF2	ENST00000393437.3,ENST00000409647.1	chr2	100915297:100915412:100915687:100915781:100916178:100916380,	100915688	100915781	100915732	100915732	Frame_Shift_Del	C	-	p.G439fs
LIHC	TCGA-DD-A39Y-01	NPAS2	ENST00000474550.1,ENST00000433408.1,ENST00000542504.1,ENST00000335681.5	chr2	101604540:101604738:101606717:101606908:101607241:101607334,	101606718	101606908	101606874	101606874	Frame_Shift_Del	C	-	p.P662fs
LIHC	TCGA-DD-A39Y-01	TBC1D8	ENST00000376840.4,ENST00000409318.1	chr2	101624078:101624735:101627390:101627488:101627912:101628002,	101627391	101627488	101627420	101627420	Frame_Shift_Del	T	-	p.T996fs
LIHC	TCGA-DD-A39Y-01	TBC1D8	ENST00000376840.4,ENST00000409318.1	chr2	101650005:101650220:101652479:101652630:101653993:101654170,	101652480	101652630	101652612	101652612	Frame_Shift_Del	T	-	p.I491fs
LIHC	TCGA-DD-A39Y-01	RFX8	ENST00000481179.1,ENST00000376826.2,ENST00000428343.1	chr2	102013865:102014186:102018897:102019214:102022404:102022519,	102018898	102019214	102018991	102018991	Frame_Shift_Del	G	-	p.P497fs
LIHC	TCGA-DD-A39Y-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102445965:102446056:102448182:102448313:102450870:102450925,	102448183	102448313	102448220	102448220	Frame_Shift_Del	G	-	p.V182fs
LIHC	TCGA-DD-A39Y-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000350198.4,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102493464:102493608:102499012:102499147:102501648:102501749,	102499013	102499147	102499141	102499141	Frame_Shift_Del	A	-	p.K942fs
LIHC	TCGA-DD-A39Y-01	MAP4K4	ENST00000350198.4	chr2	102501648:102501749:102503549:102503723:102504239:102504399,	102503550	102503723	102503705	102503705	Frame_Shift_Del	A	-	p.R1033fs
LIHC	TCGA-DD-A39Y-01	IL1R1	ENST00000422532.2	chr2	102781233:102781463:102781684:102781764:102782572:102782633,	102781685	102781764	102781717	102781717	Frame_Shift_Del	T	-	p.F148fs
LIHC	TCGA-DD-A39Y-01	IL1R1	ENST00000409929.1,ENST00000424272.1,ENST00000428279.1,ENST00000410023.1,ENST00000430171.1,ENST00000409329.1,ENST00000409288.1,ENST00000233946.3	chr2	102781233:102781468:102781574:102781764:102782572:102782719,	102781575	102781764	102781717	102781717	Frame_Shift_Del	T	-	p.F148fs
LIHC	TCGA-DD-A39Y-01	IL1RL2	ENST00000481806.1	chr2	102808384:102808580:102818015:102818175:102828559:102828634,102804315:102804385:102818015:102818175:102828559:102828634,	102818016	102818175	102818034	102818034	Frame_Shift_Del	G	-	p.G170fs
LIHC	TCGA-DD-A39Y-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000233957.1	chr2	103006518:103006677:103010928:103011087:103012990:103013346,	103010929	103011087	103010980	103010980	Frame_Shift_Del	A	-	p.E388fs
LIHC	TCGA-DD-A39Y-01	TMEM182	ENST00000486293.1	chr2	103380787:103380886:103414321:103414459:103431206:103431563,103380787:103380886:103414321:103414459:103459870:103460352,	103414322	103414459	103414356	103414356	Frame_Shift_Del	G	-	p.L122fs
LIHC	TCGA-DD-A39Y-01	MRPS9	ENST00000258455.3	chr2	105665628:105665808:105687770:105687833:105687916:105687947,	105687771	105687833	105687804	105687804	Frame_Shift_Del	T	-	p.F117fs
LIHC	TCGA-DD-A39Y-01	UXS1	ENST00000497604.1,ENST00000409032.1,ENST00000283148.7,ENST00000409501.3,ENST00000540130.1	chr2	106710059:106710613:106713173:106713277:106715171:106715229,	106713174	106713277	106713204	106713204	Frame_Shift_Del	T	-	p.K372fs
LIHC	TCGA-DD-A39Y-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109379851	109379851	Frame_Shift_Del	A	-	p.G952fs
LIHC	TCGA-DD-A39Y-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381394	109381394	Frame_Shift_Del	C	-	p.P1467fs
LIHC	TCGA-DD-A39Y-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381967	109381967	Frame_Shift_Del	T	-	p.F1658fs
LIHC	TCGA-DD-A39Y-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109382595	109382595	Frame_Shift_Del	A	-	p.E1867fs
LIHC	TCGA-DD-A39Y-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109382922	109382922	Frame_Shift_Del	A	-	p.E1976fs
LIHC	TCGA-DD-A39Y-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384578	109384578	Frame_Shift_Del	A	-	p.E2528fs
LIHC	TCGA-DD-A39Y-01	CCDC138	ENST00000295124.4,ENST00000412964.2,ENST00000409529.2	chr2	109410995:109411177:109414883:109415042:109421344:109421464,	109414884	109415042	109414937	109414937	Frame_Shift_Del	T	-	p.R210fs
LIHC	TCGA-DD-A39Y-01	CCDC138	ENST00000295124.4,ENST00000412964.2,ENST00000409529.2,ENST00000456512.1	chr2	109429275:109429383:109432396:109432561:109455640:109455757,	109432397	109432561	109432425	109432425	Frame_Shift_Del	T	-	p.L358fs
LIHC	TCGA-DD-A39Y-01	BUB1	ENST00000535254.1,ENST00000409311.1,ENST00000302759.6,ENST00000466333.1	chr2	111399695:111399811:111406810:111406954:111408122:111408316,	111406811	111406954	111406911	111406911	Frame_Shift_Del	T	-	p.K729fs
LIHC	TCGA-DD-A39Y-01	BUB1	ENST00000535254.1,ENST00000409311.1,ENST00000302759.6,ENST00000465029.1,ENST00000466333.1	chr2	111427029:111427130:111428101:111428145:111430237:111430434,	111428102	111428145	111428120	111428120	Frame_Shift_Del	T	-	p.T130fs
LIHC	TCGA-DD-A39Y-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112765959:112766052:112767524:112767643:112776989:112777099,	112767525	112767643	112767607	112767607	Frame_Shift_Del	T	-	p.T681fs
LIHC	TCGA-DD-A39Y-01	TMEM87B	ENST00000283206.4,ENST00000452614.1,ENST00000452029.1	chr2	112817553:112817614:112821738:112821830:112824512:112824644,	112821739	112821830	112821771	112821771	Frame_Shift_Del	T	-	p.F87fs
LIHC	TCGA-DD-A39Y-01	TMEM87B	ENST00000283206.4	chr2	112821738:112821830:112824512:112824644:112832488:112832539,	112824513	112824644	112824598	112824598	Frame_Shift_Del	A	-	p.E135fs
LIHC	TCGA-DD-A39Y-01	FBLN7	ENST00000472377.1,ENST00000409450.3,ENST00000409903.1,ENST00000331203.2	chr2	112917324:112917412:112922577:112922748:112933290:112933416,	112922578	112922748	112922588	112922588	Frame_Shift_Del	G	-	p.P82fs
LIHC	TCGA-DD-A39Y-01	FBLN7	ENST00000472377.1,ENST00000409450.3,ENST00000409903.1,ENST00000331203.2	chr2	112917324:112917412:112922577:112922748:112933290:112933416,	112922578	112922748	112922736	112922736	Frame_Shift_Del	C	-	p.P132fs
LIHC	TCGA-DD-A39Y-01	POLR1B	ENST00000541869.1,ENST00000537335.1,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113312100:113312155:113315486:113315658:113316869:113316972,113310221:113310393:113315486:113315658:113316869:113316972,	113315487	113315658	113315532	113315532	Frame_Shift_Del	A	-	p.K403fs
LIHC	TCGA-DD-A39Y-01	POLR1B	ENST00000541869.1,ENST00000537335.1,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113312100:113312155:113315486:113315658:113316869:113316972,113310221:113310393:113315486:113315658:113316869:113316972,	113315487	113315658	113315626	113315626	Frame_Shift_Del	T	-	p.L433fs
LIHC	TCGA-DD-A39Y-01	POLR1B	ENST00000541869.1,ENST00000484574.1,ENST00000537335.1,ENST00000333990.6,ENST00000448770.1,ENST00000263331.5,ENST00000417433.2	chr2	113321942:113322076:113325543:113325714:113326322:113326479,	113325544	113325714	113325632	113325632	Frame_Shift_Del	T	-	p.L612fs
LIHC	TCGA-DD-A39Y-01	NT5DC4	ENST00000497526.1,ENST00000327581.4	chr2	113482750:113482817:113482958:113483129:113483814:113483866,	113482959	113483129	113482995	113482995	Frame_Shift_Del	G	-	p.R308fs
LIHC	TCGA-DD-A39Y-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113940836	113940836	Frame_Shift_Del	G	-	p.W268fs
LIHC	TCGA-DD-A39Y-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113940951	113940951	Frame_Shift_Del	G	-	p.L306fs
LIHC	TCGA-DD-A39Y-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113941000	113941000	Frame_Shift_Del	C	-	p.P323fs
LIHC	TCGA-DD-A39Y-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113941050	113941050	Frame_Shift_Del	G	-	p.E339fs
LIHC	TCGA-DD-A39Y-01	PAX8	ENST00000497038.2,ENST00000485840.1,ENST00000429538.3	chr2	113984731:113984833:113992970:113993159:113994177:113994269,	113992971	113993159	113993122	113993122	Frame_Shift_Del	G	-	p.P312fs
LIHC	TCGA-DD-A39Y-01	ACTR3	ENST00000263238.2,ENST00000443297.1,ENST00000535589.2	chr2	114670748:114670804:114684921:114685032:114688877:114688946,114674460:114674585:114684921:114685032:114688877:114688946,	114684922	114685032	114684965	114684965	Frame_Shift_Del	A	-	p.E90fs
LIHC	TCGA-DD-A39Y-01	MARCO	ENST00000327097.4,ENST00000541757.1	chr2	119748164:119748209:119749352:119749451:119750007:119750052,	119749353	119749451	119749410	119749410	Frame_Shift_Del	C	-	p.A311fs
LIHC	TCGA-DD-A39Y-01	STEAP3	ENST00000409811.1	chr2	120012259:120012424:120015032:120015264:120020632:120020915,	120015033	120015264	120015181	120015181	Frame_Shift_Del	C	-	p.T445fs
LIHC	TCGA-DD-A39Y-01	PTPN4	ENST00000263708.2,ENST00000488279.2,ENST00000433888.1	chr2	120635039:120635118:120639361:120639406:120639672:120639722,	120639362	120639406	120639371	120639371	Frame_Shift_Del	T	-	p.Y126fs
LIHC	TCGA-DD-A39Y-01	PTPN4	ENST00000433888.1	chr2	120672754:120672818:120677644:120677817:120684173:120684242,120672754:120672818:120677644:120677817:120689999:120690125,	120677645	120677817	120677773	120677773	Frame_Shift_Del	T	-	p.N319fs
LIHC	TCGA-DD-A39Y-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120830753:120830796:120831675:120831754:120833051:120833096,	120831676	120831754	120831711	120831711	Frame_Shift_Del	T	-	p.F122fs
LIHC	TCGA-DD-A39Y-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120833276:120833329:120834546:120834667:120834804:120834892,	120834547	120834667	120834643	120834643	Frame_Shift_Del	T	-	p.I201fs
LIHC	TCGA-DD-A39Y-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000314490.11,ENST00000433812.1	chr2	121708818:121709021:121712820:121713006:121726289:121726491,	121712821	121713006	121712875	121712875	Frame_Shift_Del	C	-	p.T172fs
LIHC	TCGA-DD-A39Y-01	TSN	ENST00000495112.1	chr2	122514815:122514909:122516285:122516382:122518984:122519100,122513260:122513421:122516285:122516382:122518984:122519100,	122516286	122516382	122516317	122516317	Frame_Shift_Del	T	-	p.H64fs
LIHC	TCGA-DD-A39Y-01	TSN	ENST00000495112.1	chr2	122514815:122514909:122516285:122516382:122518984:122519100,122513260:122513421:122516285:122516382:122518984:122519100,	122516286	122516382	122516357	122516357	Frame_Shift_Del	A	-	p.K78fs
LIHC	TCGA-DD-A39Y-01	CNTNAP5	ENST00000431078.1	chr2	125530375:125530594:125547478:125547718:125555672:125555897,	125547479	125547718	125547637	125547637	Frame_Shift_Del	G	-	p.G971fs
LIHC	TCGA-DD-A39Y-01	BIN1	ENST00000376113.2,ENST00000348750.4	chr2	127807996:127808098:127808377:127808488:127816586:127816731,	127808378	127808488	127808394	127808394	Frame_Shift_Del	G	-	p.P519fs
LIHC	TCGA-DD-A39Y-01	BIN1	ENST00000466111.1,ENST00000409400.1	chr2	127808729:127808819:127816586:127816731:127819690:127819773,	127816587	127816731	127816665	127816665	Frame_Shift_Del	G	-	p.P308fs
LIHC	TCGA-DD-A39Y-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128028911:128029029:128030440:128030537:128036748:128036951,	128030441	128030537	128030464	128030464	Frame_Shift_Del	T	-	p.I538fs
LIHC	TCGA-DD-A39Y-01	WDR33	ENST00000322313.4	chr2	128480826:128480921:128481906:128482017:128482460:128482539,	128481907	128482017	128481975	128481975	Frame_Shift_Del	C	-	p.G376fs
LIHC	TCGA-DD-A39Y-01	WDR33	ENST00000409658.3,ENST00000393006.1	chr2	128526506:128526575:128528351:128528578:128568585:128568721,	128528352	128528578	128528454	128528454	Frame_Shift_Del	T	-	p.Q36fs
LIHC	TCGA-DD-A39Y-01	WDR33	ENST00000409658.3,ENST00000393006.1	chr2	128526506:128526575:128528351:128528578:128568585:128568721,	128528352	128528578	128528521	128528521	Frame_Shift_Del	A	-	p.F12fs
LIHC	TCGA-DD-A39Y-01	AMMECR1L	ENST00000272647.5,ENST00000393001.1	chr2	128628822:128628933:128631401:128631846:128641776:128641886,	128631402	128631846	128631683	128631683	Frame_Shift_Del	G	-	p.P42fs
LIHC	TCGA-DD-A39Y-01	SAP130	ENST00000259234.6,ENST00000259235.3,ENST00000357702.5	chr2	128753923:128754065:128757314:128757419:128757629:128757720,	128757315	128757419	128757320	128757320	Frame_Shift_Del	G	-	p.P429fs
LIHC	TCGA-DD-A39Y-01	POTEF	ENST00000361163.4,ENST00000409914.2,ENST00000360967.5,ENST00000357462.5	chr2	130843386:130843568:130843915:130843960:130845639:130845710,	130843916	130843960	130843944	130843944	Frame_Shift_Del	G	-	p.P523fs
LIHC	TCGA-DD-A39Y-01	POTEF	ENST00000361163.4,ENST00000409914.2,ENST00000360967.5,ENST00000357462.5	chr2	130843386:130843568:130843915:130843960:130845639:130845710,	130843916	130843960	130843946	130843946	Frame_Shift_Del	T	-	p.E522fs
LIHC	TCGA-DD-A39Y-01	SMPD4	ENST00000453750.1,ENST00000491319.2,ENST00000439886.1,ENST00000351288.6,ENST00000412570.1,ENST00000452225.2,ENST00000339679.7,ENST00000491128.1,ENST00000454468.1,ENST00000443958.2,ENST00000431183.2,ENST00000482171.1,ENST00000426662.2,ENST00000409031.1,ENST00000433118.1	chr2	130910682:130910744:130910891:130911023:130911274:130911508,	130910892	130911023	130910956	130910956	Frame_Shift_Del	T	-	p.K693fs
LIHC	TCGA-DD-A39Y-01	SMPD4	ENST00000452225.2	chr2	130914933:130914969:130918758:130918845:130921946:130922018,130915756:130915838:130918758:130918845:130921946:130922018,	130918759	130918845	130918795	130918795	Frame_Shift_Del	G	-	p.P344fs
LIHC	TCGA-DD-A39Y-01	ARHGEF4	ENST00000532720.1,ENST00000525839.1,ENST00000355771.3,ENST00000409303.1,ENST00000490728.1,ENST00000326016.5,ENST00000392953.3	chr2	131801024:131801156:131801871:131802115:131802941:131803019,	131801872	131802115	131801934	131801934	Frame_Shift_Del	G	-	p.V555fs
LIHC	TCGA-DD-A39Y-01	FAM168B	ENST00000389915.3	chr2	131829427:131829511:131840149:131840230:131850786:131851033,	131840150	131840230	131840186	131840186	Frame_Shift_Del	C	-	p.V12fs
LIHC	TCGA-DD-A39Y-01	TUBA3D	ENST00000321253.6	chr2	132236880:132237029:132237641:132238322:132240124:132240507,	132237642	132238322	132238002	132238002	Frame_Shift_Del	G	-	p.G246fs
LIHC	TCGA-DD-A39Y-01	TUBA3D	ENST00000321253.6	chr2	132236880:132237029:132237641:132238322:132240124:132240507,	132237642	132238322	132238104	132238104	Frame_Shift_Del	A	-	p.K280fs
LIHC	TCGA-DD-A39Y-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290249	132290249	Frame_Shift_Del	C	-	p.H257fs
LIHC	TCGA-DD-A39Y-01	NCKAP5	ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133636420:133636489:133721292:133721442:133751724:133751812,	133721293	133721442	133721416	133721416	Frame_Shift_Del	T	-	p.K152fs
LIHC	TCGA-DD-A39Y-01	MGAT5	ENST00000409645.1	chr2	134877752:134877862:135011832:135012215:135027956:135028121,	135011833	135012215	135012165	135012165	Frame_Shift_Del	A	-	p.E64fs
LIHC	TCGA-DD-A39Y-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135011832:135012215:135027956:135028121:135075099:135075176,	135027957	135028121	135027965	135027965	Frame_Shift_Del	A	-	p.K84fs
LIHC	TCGA-DD-A39Y-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135160558:135160708:135170439:135170586:135180373:135180490,	135170440	135170586	135170536	135170536	Frame_Shift_Del	A	-	p.K543fs
LIHC	TCGA-DD-A39Y-01	TMEM163	ENST00000281924.6	chr2	135223684:135223796:135260471:135260568:135308140:135308232,	135260472	135260568	135260549	135260549	Frame_Shift_Del	C	-	p.V160fs
LIHC	TCGA-DD-A39Y-01	RAB3GAP1	ENST00000539493.1,ENST00000264158.8,ENST00000442034.1,ENST00000487003.1	chr2	135870720:135870840:135872785:135872951:135878388:135878488,	135872786	135872951	135872809	135872809	Frame_Shift_Del	T	-	p.I169fs
LIHC	TCGA-DD-A39Y-01	ZRANB3	ENST00000452187.2,ENST00000472452.1,ENST00000403017.2,ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	136103119:136103205:136107553:136107785:136111019:136111198,	136107554	136107785	136107627	136107627	Frame_Shift_Del	A	-	p.L174fs
LIHC	TCGA-DD-A39Y-01	ZRANB3	ENST00000264159.6	chr2	136148371:136148390:136261898:136262066:136288095:136288146,136148371:136148390:136261898:136262066:136288696:136288769,	136261899	136262066	136261919	136261919	Frame_Shift_Del	A	-	p.F47fs
LIHC	TCGA-DD-A39Y-01	ZRANB3	ENST00000264159.6	chr2	136148371:136148390:136261898:136262066:136288095:136288146,136148371:136148390:136261898:136262066:136288696:136288769,	136261899	136262066	136261974	136261974	Frame_Shift_Del	A	-	p.L29fs
LIHC	TCGA-DD-A39Y-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136467628:136467801:136473119:136473264:136479493:136479576,	136473120	136473264	136473231	136473231	Frame_Shift_Del	C	-	p.P915fs
LIHC	TCGA-DD-A39Y-01	UBXN4	ENST00000416538.1	chr2	136505836:136505939:136511108:136511847:136513086:136513228,	136511109	136511847	136511125	136511125	Frame_Shift_Del	T	-	p.F68fs
LIHC	TCGA-DD-A39Y-01	MCM6	ENST00000264156.2	chr2	136610356:136610485:136614297:136614453:136615466:136615574,	136614298	136614453	136614382	136614382	Frame_Shift_Del	T	-	p.K514fs
LIHC	TCGA-DD-A39Y-01	MCM6	ENST00000264156.2	chr2	136610356:136610485:136614297:136614453:136615466:136615574,	136614298	136614453	136614405	136614405	Frame_Shift_Del	T	-	p.S507fs
LIHC	TCGA-DD-A39Y-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	137872693:137872863:137917782:137917938:137928310:137928485,	137917783	137917938	137917830	137917830	Frame_Shift_Del	C	-	p.P473fs
LIHC	TCGA-DD-A39Y-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	138417233:138417316:138420952:138421145:138425343:138425431,	138420953	138421145	138421061	138421061	Frame_Shift_Del	A	-	p.K1523fs
LIHC	TCGA-DD-A39Y-01	SPOPL	ENST00000420679.1,ENST00000280098.4	chr2	139307726:139307864:139308052:139308174:139308543:139308624,139307726:139307864:139308052:139308174:139308472:139308624,	139308053	139308174	139308092	139308092	Frame_Shift_Del	A	-	p.N40fs
LIHC	TCGA-DD-A39Y-01	SPOPL	ENST00000280098.4	chr2	139308543:139308624:139310123:139310251:139316591:139316769,	139310124	139310251	139310171	139310171	Frame_Shift_Del	A	-	p.K135fs
LIHC	TCGA-DD-A39Y-01	ARHGAP15	ENST00000548929.1,ENST00000548242.1,ENST00000295095.6	chr2	144193169:144193268:144194481:144194611:144244941:144245048,	144194482	144194611	144194484	144194484	Frame_Shift_Del	A	-	p.P192fs
LIHC	TCGA-DD-A39Y-01	ORC4	ENST00000535373.1,ENST00000495601.1,ENST00000457954.1,ENST00000416719.1,ENST00000440042.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000490200.1,ENST00000392858.1	chr2	148716359:148716435:148730307:148730398:148731016:148731093,	148730308	148730398	148730313	148730313	Frame_Shift_Del	T	-	p.T74fs
LIHC	TCGA-DD-A39Y-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247114	149247114	Frame_Shift_Del	A	-	p.K1072fs
LIHC	TCGA-DD-A39Y-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149248006	149248006	Frame_Shift_Del	C	-	p.S1369fs
LIHC	TCGA-DD-A39Y-01	EPC2	ENST00000258484.6,ENST00000457184.1,ENST00000397424.2	chr2	149447782:149447942:149501190:149501336:149511495:149511589,	149501191	149501336	149501317	149501317	Frame_Shift_Del	A	-	p.E147fs
LIHC	TCGA-DD-A39Y-01	MMADHC	ENST00000428879.1,ENST00000422782.2,ENST00000303319.5	chr2	150432950:150433056:150435944:150436162:150438640:150438785,	150435945	150436162	150436040	150436040	Frame_Shift_Del	T	-	p.S93fs
LIHC	TCGA-DD-A39Y-01	NMI	ENST00000243346.5	chr2	152135341:152135504:152138461:152138557:152139381:152139468,	152138462	152138557	152138502	152138502	Frame_Shift_Del	T	-	p.K46fs
LIHC	TCGA-DD-A39Y-01	RIF1	ENST00000433166.2,ENST00000444746.2,ENST00000494333.1,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152267773:152267852:152271336:152271433:152273074:152273202,	152271337	152271433	152271344	152271344	Frame_Shift_Del	T	-	p.I64fs
LIHC	TCGA-DD-A39Y-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152319553	152319553	Frame_Shift_Del	A	-	p.R1173fs
LIHC	TCGA-DD-A39Y-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320819	152320819	Frame_Shift_Del	A	-	p.I1595fs
LIHC	TCGA-DD-A39Y-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321834	152321834	Frame_Shift_Del	A	-	p.K1934fs
LIHC	TCGA-DD-A39Y-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152322173	152322173	Frame_Shift_Del	A	-	p.K2047fs
LIHC	TCGA-DD-A39Y-01	NEB	ENST00000413693.1,ENST00000509223.2	chr2	152350674:152350767:152352789:152352882:152359306:152359399,152350674:152350767:152352789:152352882:152353454:152353547,152350674:152350767:152352789:152352882:152359862:152359943,	152352790	152352882	152352857	152352857	Frame_Shift_Del	T	-	p.K8140fs
LIHC	TCGA-DD-A39Y-01	NEB	ENST00000424585.1	chr2	152352818:152352882:152353454:152353547:152359306:152359399,	152353455	152353547	152353531	152353531	Frame_Shift_Del	T	-	p.N8106fs
LIHC	TCGA-DD-A39Y-01	NEB	ENST00000397337.2,ENST00000397336.2	chr2	152354139:152354232:152354773:152354866:152355811:152355904,152354139:152354232:152354773:152354866:152357904:152357997,152354139:152354232:152354773:152354866:152359306:152359399,	152354774	152354866	152354825	152354825	Frame_Shift_Del	G	-	p.P8052fs
LIHC	TCGA-DD-A39Y-01	NEB	ENST00000603639.1,ENST00000489048.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000409198.1,ENST00000172853.10	chr2	152551035:152551143:152552091:152552196:152553150:152553249,	152552092	152552196	152552144	152552144	Frame_Shift_Del	G	-	p.P541fs
LIHC	TCGA-DD-A39Y-01	NEB	ENST00000603639.1,ENST00000489048.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000409198.1,ENST00000172853.10	chr2	152551035:152551143:152552091:152552196:152553150:152553249,	152552092	152552196	152552192	152552192	Frame_Shift_Del	T	-	p.N525fs
LIHC	TCGA-DD-A39Y-01	STAM2	ENST00000463854.1,ENST00000482997.1	chr2	153004738:153004814:153006658:153006743:153032116:153032243,	153006659	153006743	153006679	153006679	Frame_Shift_Del	T	-	p.K35fs
LIHC	TCGA-DD-A39Y-01	PRPF40A	ENST00000448428.1,ENST00000450303.2,ENST00000354363.6	chr2	153551055:153551136:153572508:153572640:153573869:153573945,	153572509	153572640	153572534	153572534	Frame_Shift_Del	G	-	p.P64fs
LIHC	TCGA-DD-A39Y-01	ARL6IP6	ENST00000463690.1,ENST00000495469.1,ENST00000326446.5,ENST00000425034.1	chr2	153577046:153577100:153591507:153591640:153616260:153616365,	153591508	153591640	153591561	153591561	Frame_Shift_Del	T	-	p.F170fs
LIHC	TCGA-DD-A39Y-01	ARL6IP6	ENST00000463690.1,ENST00000495469.1,ENST00000326446.5,ENST00000425034.1	chr2	153577046:153577100:153591507:153591640:153616260:153616365,	153591508	153591640	153591587	153591587	Frame_Shift_Del	T	-	p.D178fs
LIHC	TCGA-DD-A39Y-01	GPD2	ENST00000409674.1,ENST00000438166.2,ENST00000310454.6,ENST00000409125.4,ENST00000409861.1	chr2	157425874:157426050:157426598:157426730:157427645:157427804,	157426599	157426730	157426615	157426615	Frame_Shift_Del	C	-	p.A499fs
LIHC	TCGA-DD-A39Y-01	GPD2	ENST00000540309.1,ENST00000492005.1,ENST00000409674.1,ENST00000438166.2,ENST00000310454.6,ENST00000464846.1,ENST00000409125.4,ENST00000409861.1	chr2	157435597:157435676:157436201:157436300:157439304:157439426,	157436202	157436300	157436224	157436224	Frame_Shift_Del	A	-	p.E661fs
LIHC	TCGA-DD-A39Y-01	DAPL1	ENST00000343761.4	chr2	159663594:159663627:159682907:159682999:159718920:159719293,	159682908	159682999	159682952	159682952	Frame_Shift_Del	T	-	p.P84fs
LIHC	TCGA-DD-A39Y-01	TANC1	ENST00000470074.1,ENST00000263635.6,ENST00000454300.1	chr2	160055528:160055564:160074007:160074141:160075748:160075872,	160074008	160074141	160074031	160074031	Frame_Shift_Del	G	-	p.G1090fs
LIHC	TCGA-DD-A39Y-01	WDSUB1	ENST00000409990.3,ENST00000409124.1,ENST00000392796.3,ENST00000359774.4	chr2	160116320:160116354:160128212:160128306:160132056:160132149,	160128213	160128306	160128241	160128241	Frame_Shift_Del	A	-	p.S248fs
LIHC	TCGA-DD-A39Y-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160255339:160255405:160257109:160257175:160261359:160261421,	160257110	160257175	160257151	160257151	Frame_Shift_Del	T	-	p.I953fs
LIHC	TCGA-DD-A39Y-01	ITGB6	ENST00000409872.1,ENST00000409583.1,ENST00000428609.2,ENST00000283249.2	chr2	160964189:160964356:160968590:160968710:160980301:160980399,	160968591	160968710	160968665	160968665	Frame_Shift_Del	T	-	p.N676fs
LIHC	TCGA-DD-A39Y-01	RBMS1	ENST00000409075.1,ENST00000491781.1,ENST00000409972.1,ENST00000348849.3,ENST00000392753.3,ENST00000409289.2,ENST00000474820.1	chr2	161157161:161157241:161159840:161159998:161169666:161169758,	161159841	161159998	161159944	161159944	Frame_Shift_Del	C	-	p.D153fs
LIHC	TCGA-DD-A39Y-01	TANK	ENST00000392749.2,ENST00000259075.2	chr2	162081141:162081257:162087481:162088062:162091852:162091892,	162087482	162088062	162087883	162087883	Frame_Shift_Del	A	-	p.K308fs
LIHC	TCGA-DD-A39Y-01	PSMD14	ENST00000477232.1,ENST00000409682.3	chr2	162241974:162242082:162247614:162247689:162251588:162251714,	162247615	162247689	162247669	162247669	Frame_Shift_Del	A	-	p.K209fs
LIHC	TCGA-DD-A39Y-01	SLC4A10	ENST00000446228.1,ENST00000446997.1,ENST00000272716.5,ENST00000375514.5,ENST00000421911.1,ENST00000415876.2	chr2	162807196:162807358:162813498:162813750:162814996:162815065,	162813499	162813750	162813621	162813621	Frame_Shift_Del	A	-	p.L869fs
LIHC	TCGA-DD-A39Y-01	GCA	ENST00000437150.2,ENST00000233612.4	chr2	163215553:163215667:163216003:163216062:163227815:163228105,163215553:163215667:163216003:163216062:163216726:163217481,	163216004	163216062	163216047	163216047	Frame_Shift_Del	T	-	p.N204fs
LIHC	TCGA-DD-A39Y-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000263915.3	chr2	165349332:165349692:165350940:165351034:165353517:165353562,	165350941	165351034	165351001	165351001	Frame_Shift_Del	G	-	p.P472fs
LIHC	TCGA-DD-A39Y-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000469573.1,ENST00000263915.3,ENST00000446413.2	chr2	165378489:165378627:165381513:165381588:165383523:165383645,	165381514	165381588	165381559	165381559	Frame_Shift_Del	A	-	p.F211fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551660	165551660	Frame_Shift_Del	A	-	p.W748fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551660	165551660	Frame_Shift_Del	A	-	p.W748fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551880	165551880	Frame_Shift_Del	T	-	p.K674fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551880	165551880	Frame_Shift_Del	T	-	p.K674fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165552292	165552292	Frame_Shift_Del	T	-	p.N537fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165552292	165552292	Frame_Shift_Del	T	-	p.N537fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000342193.4,ENST00000456171.1,ENST00000194871.6,ENST00000375458.2,ENST00000392717.2,ENST00000409184.3,ENST00000493868.1	chr2	165561461:165561615:165578584:165578821:165578934:165579001,	165578585	165578821	165578633	165578633	Frame_Shift_Del	C	-	p.R316fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000342193.4,ENST00000456171.1,ENST00000194871.6,ENST00000375458.2,ENST00000392717.2,ENST00000409184.3,ENST00000493868.1	chr2	165561461:165561615:165578584:165578821:165578934:165579001,	165578585	165578821	165578685	165578685	Frame_Shift_Del	G	-	p.P299fs
LIHC	TCGA-DD-A39Y-01	COBLL1	ENST00000342193.4,ENST00000456171.1,ENST00000194871.6,ENST00000375458.2,ENST00000392717.2,ENST00000409184.3,ENST00000493868.1	chr2	165561461:165561615:165578584:165578821:165578934:165579001,	165578585	165578821	165578799	165578799	Frame_Shift_Del	G	-	p.P261fs
LIHC	TCGA-DD-A39Y-01	SLC38A11	ENST00000409058.1,ENST00000409662.1,ENST00000409149.3	chr2	165795959:165796066:165801078:165801144:165802102:165802237,	165801079	165801144	165801108	165801108	Frame_Shift_Del	A	-	p.L109fs
LIHC	TCGA-DD-A39Y-01	SLC38A11	ENST00000303735.4	chr2	165795959:165796066:165802102:165802237:165809216:165809291,	165802103	165802237	165802222	165802222	Frame_Shift_Del	A	-	p.L27fs
LIHC	TCGA-DD-A39Y-01	SCN3A	ENST00000440431.2,ENST00000283254.7	chr2	166019065:166019338:166020127:166020219:166020901:166021030,	166020128	166020219	166020146	166020146	Frame_Shift_Del	T	-	p.T226fs
LIHC	TCGA-DD-A39Y-01	TTC21B	ENST00000243344.7	chr2	166775785:166775943:166781058:166781188:166785644:166785845,	166781059	166781188	166781164	166781164	Frame_Shift_Del	A	-	p.C471fs
LIHC	TCGA-DD-A39Y-01	SCN1A	ENST00000423058.2,ENST00000303395.4,ENST00000375405.3,ENST00000409050.1	chr2	166856232:166856286:166858981:166859263:166866228:166866351,	166858982	166859263	166859172	166859172	Frame_Shift_Del	C	-	p.G1365fs
LIHC	TCGA-DD-A39Y-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141203	167141203	Frame_Shift_Del	A	-	p.F579fs
LIHC	TCGA-DD-A39Y-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141203	167141203	Frame_Shift_Del	A	-	p.F579fs
LIHC	TCGA-DD-A39Y-01	SCN9A	ENST00000409435.1,ENST00000303354.6,ENST00000409672.1,ENST00000472119.1	chr2	167159599:167159812:167160747:167160839:167162301:167162430,	167160748	167160839	167160766	167160766	Frame_Shift_Del	T	-	p.T225fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100394	168100394	Frame_Shift_Del	A	-	p.E831fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102891	168102891	Frame_Shift_Del	A	-	p.I1663fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103135	168103135	Frame_Shift_Del	T	-	p.F1746fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105095	168105095	Frame_Shift_Del	A	-	p.Q2398fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105224	168105224	Frame_Shift_Del	C	-	p.S2441fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105436	168105436	Frame_Shift_Del	A	-	p.K2513fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105629	168105629	Frame_Shift_Del	A	-	p.Q2576fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105932	168105932	Frame_Shift_Del	A	-	p.Q2677fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106672	168106672	Frame_Shift_Del	A	-	p.K2924fs
LIHC	TCGA-DD-A39Y-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107038	168107038	Frame_Shift_Del	C	-	p.P3046fs
LIHC	TCGA-DD-A39Y-01	STK39	ENST00000355999.4	chr2	168994597:168994731:168996798:168996900:168997158:168997268,	168996799	168996900	168996805	168996805	Frame_Shift_Del	G	-	p.P278fs
LIHC	TCGA-DD-A39Y-01	STK39	ENST00000355999.4	chr2	168994597:168994731:168996798:168996900:168997158:168997268,	168996799	168996900	168996837	168996837	Frame_Shift_Del	T	-	p.T268fs
LIHC	TCGA-DD-A39Y-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699551	169699551	Frame_Shift_Del	A	-	p.E185fs
LIHC	TCGA-DD-A39Y-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699602	169699602	Frame_Shift_Del	A	-	p.E202fs
LIHC	TCGA-DD-A39Y-01	SPC25	ENST00000282074.2	chr2	169732581:169732686:169733747:169733894:169745735:169745801,	169733748	169733894	169733824	169733824	Frame_Shift_Del	T	-	p.K90fs
LIHC	TCGA-DD-A39Y-01	SPC25	ENST00000282074.2	chr2	169732581:169732686:169733747:169733894:169745735:169745801,	169733748	169733894	169733858	169733858	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-DD-A39Y-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127490	170127490	Frame_Shift_Del	A	-	p.F748fs
LIHC	TCGA-DD-A39Y-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170401230:170401345:170402727:170403214:170411633:170411765,	170402728	170403214	170403083	170403083	Frame_Shift_Del	T	-	p.N450fs
LIHC	TCGA-DD-A39Y-01	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170592406	170592406	Frame_Shift_Del	T	-	p.P294fs
LIHC	TCGA-DD-A39Y-01	SSB	ENST00000260956.4,ENST00000409333.1	chr2	170666792:170666933:170667367:170667554:170667692:170667833,	170667368	170667554	170667489	170667489	Frame_Shift_Del	A	-	p.E311fs
LIHC	TCGA-DD-A39Y-01	SSB	ENST00000260956.4,ENST00000409333.1	chr2	170667367:170667554:170667692:170667833:170668177:170668574,	170667693	170667833	170667776	170667776	Frame_Shift_Del	A	-	p.K361fs
LIHC	TCGA-DD-A39Y-01	UBR3	ENST00000430321.1,ENST00000392631.1,ENST00000272793.5,ENST00000392632.2,ENST00000418381.1	chr2	170843243:170843304:170850832:170850966:170857813:170857924,	170850833	170850966	170850864	170850864	Frame_Shift_Del	A	-	p.P1272fs
LIHC	TCGA-DD-A39Y-01	UBR3	ENST00000430321.1,ENST00000392631.1,ENST00000272793.5,ENST00000392632.2,ENST00000418381.1	chr2	170843243:170843304:170850832:170850966:170857813:170857924,	170850833	170850966	170850903	170850903	Frame_Shift_Del	T	-	p.P1285fs
LIHC	TCGA-DD-A39Y-01	UBR3	ENST00000392631.1,ENST00000474426.1,ENST00000272793.5,ENST00000439681.1,ENST00000392632.2,ENST00000418381.1,ENST00000444475.1	chr2	170897391:170897495:170911969:170912094:170917588:170917696,	170911970	170912094	170911990	170911990	Frame_Shift_Del	A	-	p.K1561fs
LIHC	TCGA-DD-A39Y-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171884854:171884915:171902683:171902872:171906323:171906460,	171902684	171902872	171902741	171902741	Frame_Shift_Del	T	-	p.N323fs
LIHC	TCGA-DD-A39Y-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000486857.1,ENST00000409443.2,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171912980:171913076:171914660:171914707:171917590:171917666,	171914661	171914707	171914692	171914692	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-DD-A39Y-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195780	172195780	Frame_Shift_Del	A	-	p.S174fs
LIHC	TCGA-DD-A39Y-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195839	172195839	Frame_Shift_Del	T	-	p.N154fs
LIHC	TCGA-DD-A39Y-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195897	172195897	Frame_Shift_Del	T	-	p.T135fs
LIHC	TCGA-DD-A39Y-01	METTL8	ENST00000375258.4,ENST00000453846.1,ENST00000442778.1,ENST00000442541.1,ENST00000392599.2,ENST00000392604.2	chr2	172196050:172196064:172216931:172217023:172291183:172291290,172196050:172196064:172216931:172217023:172271112:172271236,172196050:172196064:172216931:172217023:172248552:172248707,	172216932	172217023	172216975	172216975	Frame_Shift_Del	T	-	p.K64fs
LIHC	TCGA-DD-A39Y-01	SLC25A12	ENST00000422440.2,ENST00000263812.4,ENST00000392592.4	chr2	172644298:172644457:172647960:172648099:172650136:172650277,	172647961	172648099	172647996	172647996	Frame_Shift_Del	C	-	p.G518fs
LIHC	TCGA-DD-A39Y-01	SLC25A12	ENST00000422440.2,ENST00000263812.4,ENST00000392592.4	chr2	172666733:172666786:172669848:172670007:172671630:172671712,	172669849	172670007	172669908	172669908	Frame_Shift_Del	T	-	p.N371fs
LIHC	TCGA-DD-A39Y-01	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335733	173335733	Frame_Shift_Del	T	-	p.T225fs
LIHC	TCGA-DD-A39Y-01	SP3	ENST00000418194.2,ENST00000416195.1,ENST00000455789.2,ENST00000310015.6	chr2	174773259:174774985:174777797:174777994:174783320:174783513,	174777798	174777994	174777846	174777846	Frame_Shift_Del	T	-	p.R661fs
LIHC	TCGA-DD-A39Y-01	CIR1	ENST00000362053.5,ENST00000464393.1,ENST00000342016.3	chr2	175213862:175213900:175215387:175215473:175216346:175216453,	175215388	175215473	175215427	175215427	Frame_Shift_Del	A	-	p.L213fs
LIHC	TCGA-DD-A39Y-01	SCRN3	ENST00000475928.1	chr2	175275071:175275231:175289202:175289377:175292440:175292592,	175289203	175289377	175289337	175289337	Frame_Shift_Del	A	-	p.Q351fs
LIHC	TCGA-DD-A39Y-01	CHRNA1	ENST00000409542.1,ENST00000348749.5,ENST00000261007.5,ENST00000435083.1	chr2	175612537:175612983:175613307:175613547:175614673:175614897,	175613308	175613547	175613429	175613429	Frame_Shift_Del	T	-	p.K374fs
LIHC	TCGA-DD-A39Y-01	ATF2	ENST00000538946.1,ENST00000417080.1,ENST00000415955.1,ENST00000428760.1,ENST00000409635.1,ENST00000264110.2,ENST00000429579.1,ENST00000345739.5,ENST00000392544.1,ENST00000426833.3,ENST00000456655.1,ENST00000435231.2	chr2	175976295:175976382:175978721:175978836:175979417:175979485,	175978722	175978836	175978787	175978787	Frame_Shift_Del	T	-	p.T226fs
LIHC	TCGA-DD-A39Y-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177033987	177033987	Frame_Shift_Del	C	-	p.P49fs
LIHC	TCGA-DD-A39Y-01	MTX2	ENST00000423461.2	chr2	177162576:177162623:177188119:177188192:177191552:177191629,177168968:177169093:177188119:177188192:177191552:177191629,	177188120	177188192	177188123	177188123	Frame_Shift_Del	T	-	p.F37fs
LIHC	TCGA-DD-A39Y-01	HNRNPA3	ENST00000411529.2,ENST00000392524.2,ENST00000435711.1	chr2	178081253:178081320:178081403:178081499:178081587:178081668,	178081404	178081499	178081487	178081487	Frame_Shift_Del	T	-	p.F221fs
LIHC	TCGA-DD-A39Y-01	NFE2L2	ENST00000423513.1,ENST00000446151.2,ENST00000397063.4	chr2	178097977:178098067:178098732:178098999:178129259:178129387,178097977:178098067:178098732:178098999:178128130:178128182,	178098733	178098999	178098886	178098886	Frame_Shift_Del	T	-	p.K53fs
LIHC	TCGA-DD-A39Y-01	PDE11A	ENST00000358450.4,ENST00000409504.1,ENST00000286063.6,ENST00000497003.1,ENST00000389683.3,ENST00000449286.2	chr2	178592753:178592900:178634050:178634101:178681555:178681648,	178634051	178634101	178634072	178634072	Frame_Shift_Del	T	-	p.K589fs
LIHC	TCGA-DD-A39Y-01	OSBPL6	ENST00000359685.3,ENST00000409045.3,ENST00000392505.2,ENST00000409631.1,ENST00000190611.4,ENST00000315022.2	chr2	179257138:179257265:179259039:179259162:179260177:179260348,	179259040	179259162	179259058	179259058	Frame_Shift_Del	T	-	p.N864fs
LIHC	TCGA-DD-A39Y-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000342992.6,ENST00000460472.2	chr2	179393000:179393154:179393254:179393946:179394686:179394843,	179393255	179393946	179393744	179393744	Frame_Shift_Del	T	-	p.K35578fs
LIHC	TCGA-DD-A39Y-01	TTN	ENST00000589042.1,ENST00000591111.1,ENST00000342992.6	chr2	179548725:179548809:179549056:179549140:179549392:179549476,	179549057	179549140	179549103	179549103	Frame_Shift_Del	T	-	p.K10892fs
LIHC	TCGA-DD-A39Y-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179603895	179603895	Frame_Shift_Del	A	-	p.S4689fs
LIHC	TCGA-DD-A39Y-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605049	179605049	Frame_Shift_Del	A	-	p.L4304fs
LIHC	TCGA-DD-A39Y-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605199	179605199	Frame_Shift_Del	T	-	p.K4254fs
LIHC	TCGA-DD-A39Y-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606537	179606537	Frame_Shift_Del	G	-	p.P3808fs
LIHC	TCGA-DD-A39Y-01	TTN	ENST00000359218.5	chr2	179617850:179617907:179622268:179622643:179623710:179623899,	179622269	179622643	179622409	179622409	Frame_Shift_Del	A	-	p.F3513fs
LIHC	TCGA-DD-A39Y-01	UBE2E3	ENST00000602479.1,ENST00000602888.1,ENST00000602959.1,ENST00000410062.4,ENST00000602710.1,ENST00000602303.1,ENST00000392415.2,ENST00000602291.1	chr2	181848769:181848820:181922419:181922552:181925391:181925537,	181922420	181922552	181922477	181922477	Frame_Shift_Del	G	-	p.P101fs
LIHC	TCGA-DD-A39Y-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000537515.1,ENST00000459930.1,ENST00000444005.1	chr2	183594574:183594668:183595756:183595834:183597225:183597269,	183595757	183595834	183595815	183595815	Frame_Shift_Del	T	-	p.T262fs
LIHC	TCGA-DD-A39Y-01	DUSP19	ENST00000354221.4	chr2	183943716:183943887:183948235:183948282:183951767:183951920,	183948236	183948282	183948271	183948271	Frame_Shift_Del	A	-	p.K89fs
LIHC	TCGA-DD-A39Y-01	NUP35	ENST00000409798.1,ENST00000479162.1,ENST00000374930.3,ENST00000295119.4,ENST00000446612.1	chr2	183993014:183993185:183995145:183995273:183998293:183998351,	183995146	183995273	183995187	183995187	Frame_Shift_Del	A	-	p.K85fs
LIHC	TCGA-DD-A39Y-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671929	186671929	Frame_Shift_Del	T	-	p.F6055fs
LIHC	TCGA-DD-A39Y-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186671986	186671986	Frame_Shift_Del	A	-	p.K6075fs
LIHC	TCGA-DD-A39Y-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672847	186672847	Frame_Shift_Del	A	-	p.K6361fs
LIHC	TCGA-DD-A39Y-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673611	186673611	Frame_Shift_Del	A	-	p.G6615fs
LIHC	TCGA-DD-A39Y-01	FSIP2	ENST00000343098.5,ENST00000415915.1,ENST00000424728.1	chr2	186678271:186678769:186680097:186680198:186689160:186689207,	186680098	186680198	186680105	186680105	Frame_Shift_Del	A	-	p.E6867fs
LIHC	TCGA-DD-A39Y-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000261023.3	chr2	187540546:187540654:187541539:187541662:187541923:187542168,	187541540	187541662	187541584	187541584	Frame_Shift_Del	T	-	p.P991fs
LIHC	TCGA-DD-A39Y-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189866261:189866315:189867023:189867077:189867680:189867755,	189867024	189867077	189867062	189867062	Frame_Shift_Del	T	-	p.G810fs
LIHC	TCGA-DD-A39Y-01	WDR75	ENST00000436347.1,ENST00000427960.1,ENST00000314761.4	chr2	190334069:190334165:190334801:190334971:190335544:190335604,	190334802	190334971	190334844	190334844	Frame_Shift_Del	A	-	p.Q621fs
LIHC	TCGA-DD-A39Y-01	ANKAR	ENST00000441800.1,ENST00000281412.6	chr2	190592581:190592823:190592992:190593146:190602408:190602567,	190592993	190593146	190593066	190593066	Frame_Shift_Del	A	-	p.Q984fs
LIHC	TCGA-DD-A39Y-01	ANKAR	ENST00000441800.1,ENST00000281412.6	chr2	190597832:190597955:190602408:190602567:190603290:190603408,190593385:190593547:190602408:190602567:190603290:190603408,190593078:190593146:190602408:190602567:190603290:190603408,	190602409	190602567	190602413	190602413	Frame_Shift_Del	T	-	p.I1143fs
LIHC	TCGA-DD-A39Y-01	PMS1	ENST00000424307.1,ENST00000441310.2,ENST00000432292.3,ENST00000342075.4,ENST00000418224.3,ENST00000447232.2	chr2	190708689:190708806:190717380:190717503:190718664:190718808,	190717381	190717503	190717487	190717487	Frame_Shift_Del	A	-	p.Q269fs
LIHC	TCGA-DD-A39Y-01	PMS1	ENST00000441310.2,ENST00000432292.3,ENST00000342075.4,ENST00000418224.3,ENST00000409823.3	chr2	190719748:190719854:190728468:190728954:190732524:190732655,	190728469	190728954	190728513	190728513	Frame_Shift_Del	A	-	p.Q634fs
LIHC	TCGA-DD-A39Y-01	PMS1	ENST00000450931.1	chr2	190718964:190719854:190728468:190728700:190738221:190738254,190719748:190719854:190728468:190728700:190732524:190732655,	190728469	190728700	190728513	190728513	Frame_Shift_Del	A	-	p.Q634fs
LIHC	TCGA-DD-A39Y-01	PMS1	ENST00000441310.2,ENST00000432292.3,ENST00000342075.4,ENST00000418224.3,ENST00000409823.3	chr2	190719748:190719854:190728468:190728954:190732524:190732655,	190728469	190728954	190728565	190728565	Frame_Shift_Del	A	-	p.R651fs
LIHC	TCGA-DD-A39Y-01	PMS1	ENST00000450931.1	chr2	190718964:190719854:190728468:190728700:190738221:190738254,190719748:190719854:190728468:190728700:190732524:190732655,	190728469	190728700	190728565	190728565	Frame_Shift_Del	A	-	p.R651fs
LIHC	TCGA-DD-A39Y-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191524590	191524590	Frame_Shift_Del	A	-	p.K230fs
LIHC	TCGA-DD-A39Y-01	GLS	ENST00000409428.1,ENST00000320717.3	chr2	191819309:191819386:191819480:191819544:191827555:191827714,	191819481	191819544	191819501	191819501	Frame_Shift_Del	T	-	p.F604fs
LIHC	TCGA-DD-A39Y-01	MYO1B	ENST00000339514.4,ENST00000304164.4,ENST00000451437.1,ENST00000392318.3,ENST00000392316.1	chr2	192214887:192214951:192225356:192225455:192226993:192227097,	192225357	192225455	192225403	192225403	Frame_Shift_Del	A	-	p.R203fs
LIHC	TCGA-DD-A39Y-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545001	196545001	Frame_Shift_Del	T	-	p.F80fs
LIHC	TCGA-DD-A39Y-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545126	196545126	Frame_Shift_Del	A	-	p.G120fs
LIHC	TCGA-DD-A39Y-01	SLC39A10	ENST00000465851.1,ENST00000444421.1,ENST00000409086.3,ENST00000541054.1,ENST00000430412.1,ENST00000359634.5	chr2	196545616:196545774:196548422:196548630:196571339:196571400,	196548423	196548630	196548551	196548551	Frame_Shift_Del	T	-	p.H379fs
LIHC	TCGA-DD-A39Y-01	DNAH7	ENST00000410072.1,ENST00000427816.1,ENST00000312428.6	chr2	196913019:196913128:196915910:196915973:196922777:196922840,	196915911	196915973	196915927	196915927	Frame_Shift_Del	A	-	p.L42fs
LIHC	TCGA-DD-A39Y-01	CCDC150	ENST00000389175.4,ENST00000431807.2,ENST00000272831.7	chr2	197541277:197541455:197542016:197542085:197559769:197559794,	197542017	197542085	197542077	197542077	Frame_Shift_Del	A	-	p.K501fs
LIHC	TCGA-DD-A39Y-01	CCDC150	ENST00000448409.1,ENST00000424427.1	chr2	197590696:197590823:197593916:197594585:197594680:197594842,	197593917	197594585	197594568	197594568	Frame_Shift_Del	A	-	p.K936fs
LIHC	TCGA-DD-A39Y-01	ANKRD44	ENST00000424317.1,ENST00000282272.8,ENST00000448801.1,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197863060:197863143:197863630:197863776:197865142:197865226,	197863631	197863776	197863643	197863643	Frame_Shift_Del	C	-	p.A860fs
LIHC	TCGA-DD-A39Y-01	SF3B1	ENST00000335508.6	chr2	198273092:198273305:198274493:198274731:198281464:198281635,	198274494	198274731	198274526	198274526	Frame_Shift_Del	T	-	p.N291fs
LIHC	TCGA-DD-A39Y-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000263960.2	chr2	198318216:198318388:198327262:198327455:198334793:198334895,198324655:198324805:198327262:198327455:198334793:198334895,	198327263	198327455	198327407	198327407	Frame_Shift_Del	G	-	p.L133fs
LIHC	TCGA-DD-A39Y-01	HSPD1	ENST00000388968.3,ENST00000345042.2	chr2	198351309:198351922:198352581:198352760:198353040:198353215,	198352582	198352760	198352603	198352603	Frame_Shift_Del	T	-	p.K516fs
LIHC	TCGA-DD-A39Y-01	SPATS2L	ENST00000409140.3,ENST00000358677.5,ENST00000409385.1,ENST00000409988.3,ENST00000451764.2,ENST00000409718.1,ENST00000409755.3,ENST00000409151.1	chr2	201283972:201284219:201303844:201304051:201305371:201305447,	201303845	201304051	201304019	201304019	Frame_Shift_Del	A	-	p.E207fs
LIHC	TCGA-DD-A39Y-01	NDUFB3	ENST00000237889.4	chr2	201936752:201936782:201943603:201943745:201950181:201950236,	201943604	201943745	201943610	201943610	Frame_Shift_Del	C	-	p.A2fs
LIHC	TCGA-DD-A39Y-01	CFLAR	ENST00000395148.2,ENST00000341582.6,ENST00000342795.5,ENST00000340870.5,ENST00000355558.4,ENST00000341222.6	chr2	201983386:201983624:201994451:201994869:201997751:201997825,201981129:201981204:201994451:201994869:201997751:201997825,	201994452	201994869	201994701	201994701	Frame_Shift_Del	G	-	p.R38fs
LIHC	TCGA-DD-A39Y-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050593	202050593	Frame_Shift_Del	G	-	p.L31fs
LIHC	TCGA-DD-A39Y-01	CASP8	ENST00000339403.6	chr2	202139611:202139676:202141549:202141827:202149538:202150040,	202141550	202141827	202141624	202141624	Frame_Shift_Del	A	-	p.A304fs
LIHC	TCGA-DD-A39Y-01	CASP8	ENST00000432109.2,ENST00000323492.7,ENST00000358485.4,ENST00000264275.5,ENST00000392263.2	chr2	202137620:202137665:202141549:202141691:202149538:202150040,202137360:202137499:202141549:202141691:202149538:202149673,202139611:202139676:202141549:202141691:202149538:202150040,	202141550	202141691	202141624	202141624	Frame_Shift_Del	A	-	p.A304fs
LIHC	TCGA-DD-A39Y-01	STRADB	ENST00000415688.1,ENST00000194530.3	chr2	202343285:202343324:202344211:202344254:202344754:202345071,	202344212	202344254	202344241	202344241	Frame_Shift_Del	T	-	p.V367fs
LIHC	TCGA-DD-A39Y-01	MPP4	ENST00000409143.1	chr2	202549786:202549868:202550641:202550773:202552013:202552094,202549786:202549868:202550641:202550773:202554924:202555002,	202550642	202550773	202550655	202550655	Frame_Shift_Del	T	-	p.N160fs
LIHC	TCGA-DD-A39Y-01	MPP4	ENST00000409143.1	chr2	202549786:202549868:202550641:202550773:202552013:202552094,202549786:202549868:202550641:202550773:202554924:202555002,	202550642	202550773	202550725	202550725	Frame_Shift_Del	G	-	p.L138fs
LIHC	TCGA-DD-A39Y-01	NOP58	ENST00000433543.2	chr2	203155847:203155993:203157499:203157626:203160396:203160560,203155847:203155993:203157499:203157626:203162101:203162236,	203157500	203157626	203157546	203157546	Frame_Shift_Del	A	-	p.Q276fs
LIHC	TCGA-DD-A39Y-01	NOP58	ENST00000264279.5	chr2	203162567:203162629:203164956:203165090:203167643:203167780,	203164957	203165090	203165066	203165066	Frame_Shift_Del	A	-	p.K461fs
LIHC	TCGA-DD-A39Y-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203397307:203397455:203407033:203407170:203417438:203417611,	203407034	203407170	203407062	203407062	Frame_Shift_Del	T	-	p.A435fs
LIHC	TCGA-DD-A39Y-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204058517:204058634:204062024:204062114:204064060:204064170,	204062025	204062114	204062056	204062056	Frame_Shift_Del	C	-	p.A2328fs
LIHC	TCGA-DD-A39Y-01	CYP20A1	ENST00000429815.2	chr2	204131236:204131404:204137368:204137471:204143295:204143411,	204137369	204137471	204137438	204137438	Frame_Shift_Del	A	-	p.K216fs
LIHC	TCGA-DD-A39Y-01	CYP20A1	ENST00000356079.4,ENST00000461371.1,ENST00000431118.1	chr2	204131236:204131404:204137392:204137471:204143295:204143411,	204137393	204137471	204137438	204137438	Frame_Shift_Del	A	-	p.K216fs
LIHC	TCGA-DD-A39Y-01	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204144781:204144836:204150334:204150455:204154487:204154599,	204150335	204150455	204150354	204150354	Frame_Shift_Del	T	-	p.C290fs
LIHC	TCGA-DD-A39Y-01	ABI2	ENST00000261016.6,ENST00000261017.5,ENST00000422511.2,ENST00000295851.5,ENST00000430574.1,ENST00000454023.1,ENST00000441061.1,ENST00000424558.1,ENST00000417864.1	chr2	204255768:204255866:204259422:204259569:204260381:204260503,204255768:204255866:204259422:204259569:204260378:204260503,	204259423	204259569	204259431	204259431	Frame_Shift_Del	C	-	p.S196fs
LIHC	TCGA-DD-A39Y-01	ABI2	ENST00000422719.1	chr2	204259470:204259569:204260378:204260503:204267298:204267400,204255768:204255866:204260378:204260503:204267298:204267400,	204260379	204260503	204260454	204260454	Frame_Shift_Del	G	-	p.V267fs
LIHC	TCGA-DD-A39Y-01	ABI2	ENST00000451591.2	chr2	204259470:204259569:204260381:204260503:204267298:204267400,	204260382	204260503	204260454	204260454	Frame_Shift_Del	G	-	p.V267fs
LIHC	TCGA-DD-A39Y-01	ADAM23	ENST00000264377.3	chr2	207460774:207460886:207474633:207474724:207482302:207482396,	207474634	207474724	207474715	207474715	Frame_Shift_Del	G	-	p.W814fs
LIHC	TCGA-DD-A39Y-01	MDH1B	ENST00000374412.3,ENST00000449792.1,ENST00000454776.2	chr2	207615657:207615799:207619732:207620229:207621621:207621764,	207619733	207620229	207619843	207619843	Frame_Shift_Del	A	-	p.L268fs
LIHC	TCGA-DD-A39Y-01	FASTKD2	ENST00000487777.1	chr2	207630155:207630471:207631367:207632194:207634814:207634918,207630370:207630378:207631367:207632194:207634814:207634918,	207631368	207632194	207631429	207631429	Frame_Shift_Del	T	-	p.T4fs
LIHC	TCGA-DD-A39Y-01	FASTKD2	ENST00000487777.1	chr2	207630155:207630471:207631367:207632194:207634814:207634918,207630370:207630378:207631367:207632194:207634814:207634918,	207631368	207632194	207631711	207631711	Frame_Shift_Del	A	-	p.L98fs
LIHC	TCGA-DD-A39Y-01	FASTKD2	ENST00000487777.1	chr2	207630155:207630471:207631367:207632194:207634814:207634918,207630370:207630378:207631367:207632194:207634814:207634918,	207631368	207632194	207631754	207631754	Frame_Shift_Del	T	-	p.F114fs
LIHC	TCGA-DD-A39Y-01	FASTKD2	ENST00000236980.6,ENST00000402774.3,ENST00000403094.3,ENST00000487777.1	chr2	207638948:207639121:207651456:207651623:207652660:207652879,	207651457	207651623	207651563	207651563	Frame_Shift_Del	C	-	p.P512fs
LIHC	TCGA-DD-A39Y-01	KLF7	ENST00000412414.2,ENST00000309446.6,ENST00000421199.1	chr2	207945739:207945988:207953181:207953305:207988497:207989128,	207953182	207953305	207953199	207953199	Frame_Shift_Del	T	-	p.K280fs
LIHC	TCGA-DD-A39Y-01	KLF7	ENST00000423015.1	chr2	207953181:207953305:207988699:207989128:208030190:208030295,	207988700	207989128	207989049	207989049	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-DD-A39Y-01	METTL21A	ENST00000458426.1,ENST00000425132.1	chr2	208477703:208478167:208486529:208486641:208488952:208489104,208446517:208446670:208486529:208486641:208488952:208489104,208446418:208446884:208486529:208486641:208488952:208489104,	208486530	208486641	208486592	208486592	Frame_Shift_Del	C	-	p.G66fs
LIHC	TCGA-DD-A39Y-01	CCNYL1	ENST00000339882.5,ENST00000452312.1	chr2	208602134:208602170:208606946:208607066:208611770:208611937,	208606947	208607066	208606951	208606951	Frame_Shift_Del	A	-	p.E175fs
LIHC	TCGA-DD-A39Y-01	IDH1	ENST00000446179.1,ENST00000345146.2,ENST00000415913.1	chr2	209108150:209108328:209110042:209110148:209113092:209113384,	209110043	209110148	209110072	209110072	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-DD-A39Y-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4	chr2	209168929:209169042:209169569:209169737:209176959:209177019,	209169570	209169737	209169732	209169732	Frame_Shift_Del	A	-	p.Q544fs
LIHC	TCGA-DD-A39Y-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4,ENST00000452564.1	chr2	209182590:209182665:209184975:209185083:209188865:209189006,	209184976	209185083	209184991	209184991	Frame_Shift_Del	A	-	p.K700fs
LIHC	TCGA-DD-A39Y-01	PIKFYVE	ENST00000264380.4	chr2	209210773:209210871:209212582:209212747:209214747:209214807,	209212583	209212747	209212736	209212736	Frame_Shift_Del	T	-	p.V1788fs
LIHC	TCGA-DD-A39Y-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210558162	210558162	Frame_Shift_Del	G	-	p.R423fs
LIHC	TCGA-DD-A39Y-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210558162	210558162	Frame_Shift_Del	G	-	p.R423fs
LIHC	TCGA-DD-A39Y-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559161	210559161	Frame_Shift_Del	C	-	p.A756fs
LIHC	TCGA-DD-A39Y-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559161	210559161	Frame_Shift_Del	C	-	p.A756fs
LIHC	TCGA-DD-A39Y-01	MAP2	ENST00000475600.1	chr2	210561037:210561074:210561265:210561472:210565000:210565062,	210561266	210561472	210561363	210561363	Frame_Shift_Del	A	-	p.R1426fs
LIHC	TCGA-DD-A39Y-01	KANSL1L	ENST00000428655.1,ENST00000452086.1,ENST00000438563.1,ENST00000418791.1,ENST00000281772.9,ENST00000457374.1	chr2	210962809:210962931:210968827:210969025:210993754:210993896,	210968828	210969025	210968914	210968914	Frame_Shift_Del	G	-	p.Q448fs
LIHC	TCGA-DD-A39Y-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211018399	211018399	Frame_Shift_Del	T	-	p.N303fs
LIHC	TCGA-DD-A39Y-01	SPAG16	ENST00000272898.7,ENST00000374309.3,ENST00000440779.1,ENST00000331683.5,ENST00000413312.1,ENST00000447990.1,ENST00000406979.2	chr2	214181942:214182080:214204886:214204994:214228799:214228869,214181942:214182080:214204886:214204994:214215251:214215369,	214204887	214204994	214204964	214204964	Frame_Shift_Del	A	-	p.E174fs
LIHC	TCGA-DD-A39Y-01	BARD1	ENST00000260947.4,ENST00000421162.1,ENST00000449967.2,ENST00000455743.1	chr2	215609790:215609883:215610445:215610578:215617170:215617202,	215610446	215610578	215610567	215610567	Frame_Shift_Del	C	-	p.G563fs
LIHC	TCGA-DD-A39Y-01	ATIC	ENST00000443953.1,ENST00000435675.1,ENST00000426233.1,ENST00000540518.1,ENST00000446622.1,ENST00000236959.9	chr2	216200757:216200847:216203501:216203630:216209501:216209594,	216203502	216203630	216203619	216203619	Frame_Shift_Del	A	-	p.K405fs
LIHC	TCGA-DD-A39Y-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216229601:216229708:216230227:216230353:216232585:216232750,	216230228	216230353	216230290	216230290	Frame_Shift_Del	T	-	p.N2361fs
LIHC	TCGA-DD-A39Y-01	FN1	ENST00000346544.3,ENST00000323926.6,ENST00000336916.4,ENST00000357009.2,ENST00000345488.5,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216243927:216244040:216245533:216245803:216246934:216247048,	216245534	216245803	216245724	216245724	Frame_Shift_Del	C	-	p.G1748fs
LIHC	TCGA-DD-A39Y-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000346544.3,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000480737.1,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216246934:216247048:216248050:216248206:216248742:216248803,	216248051	216248206	216248069	216248069	Frame_Shift_Del	T	-	p.T1678fs
LIHC	TCGA-DD-A39Y-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216273041:216273149:216274285:216274462:216274656:216274837,	216274286	216274462	216274306	216274306	Frame_Shift_Del	C	-	p.G760fs
LIHC	TCGA-DD-A39Y-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216295437:216295575:216296555:216296687:216298046:216298184,	216296556	216296687	216296669	216296669	Frame_Shift_Del	C	-	p.G145fs
LIHC	TCGA-DD-A39Y-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216296555:216296687:216298046:216298184:216299418:216299547,	216298047	216298184	216298136	216298136	Frame_Shift_Del	C	-	p.G109fs
LIHC	TCGA-DD-A39Y-01	XRCC5	ENST00000476360.1,ENST00000429133.1,ENST00000392133.3,ENST00000392132.2	chr2	216974073:216974180:216977738:216977852:216981381:216981565,	216977739	216977852	216977803	216977803	Frame_Shift_Del	C	-	p.S29fs
LIHC	TCGA-DD-A39Y-01	XRCC5	ENST00000460284.1,ENST00000392133.3,ENST00000392132.2	chr2	217054947:217055057:217057361:217057458:217059641:217059709,	217057362	217057458	217057430	217057430	Frame_Shift_Del	A	-	p.L671fs
LIHC	TCGA-DD-A39Y-01	SMARCAL1	ENST00000412913.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217280979:217281030:217285021:217285255:217288355:217288406,	217285022	217285255	217285226	217285226	Frame_Shift_Del	T	-	p.L356fs
LIHC	TCGA-DD-A39Y-01	TNS1	ENST00000430930.1,ENST00000490566.1,ENST00000419504.1,ENST00000446688.1,ENST00000171887.4	chr2	218673325:218673394:218674545:218674714:218674970:218675027,	218674546	218674714	218674647	218674647	Frame_Shift_Del	T	-	p.K1620fs
LIHC	TCGA-DD-A39Y-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218713218	218713218	Frame_Shift_Del	G	-	p.P549fs
LIHC	TCGA-DD-A39Y-01	TMBIM1	ENST00000453776.1,ENST00000444000.1,ENST00000451181.1,ENST00000453281.1,ENST00000396809.2,ENST00000444881.1,ENST00000440422.1	chr2	219144832:219144849:219146662:219146904:219157188:219157226,219144832:219144849:219146662:219146904:219150485:219150657,	219146663	219146904	219146853	219146853	Frame_Shift_Del	G	-	p.P4fs
LIHC	TCGA-DD-A39Y-01	VIL1	ENST00000248444.5,ENST00000392114.2	chr2	219296579:219296680:219296768:219296906:219297515:219297674,	219296769	219296906	219296832	219296832	Frame_Shift_Del	G	-	p.G424fs
LIHC	TCGA-DD-A39Y-01	VIL1	ENST00000248444.5,ENST00000392114.2,ENST00000419986.1	chr2	219299248:219299428:219300011:219300157:219301204:219301310,	219300012	219300157	219300125	219300125	Frame_Shift_Del	G	-	p.L598fs
LIHC	TCGA-DD-A39Y-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219321814:219321884:219324512:219324628:219328028:219328089,	219324513	219324628	219324564	219324564	Frame_Shift_Del	A	-	p.F864fs
LIHC	TCGA-DD-A39Y-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219350386:219350466:219353026:219353144:219360482:219360673,	219353027	219353144	219353075	219353075	Frame_Shift_Del	T	-	p.K514fs
LIHC	TCGA-DD-A39Y-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529514	219529514	Frame_Shift_Del	C	-	p.G250fs
LIHC	TCGA-DD-A39Y-01	TTLL4	ENST00000442769.1,ENST00000258398.4,ENST00000457313.1,ENST00000392102.1	chr2	219605243:219605307:219609831:219609956:219610413:219610524,	219609832	219609956	219609920	219609920	Frame_Shift_Del	C	-	p.P585fs
LIHC	TCGA-DD-A39Y-01	GLB1L	ENST00000295759.7,ENST00000392089.2,ENST00000356283.3,ENST00000497855.1,ENST00000409640.1	chr2	220102233:220102449:220102547:220102679:220102971:220103085,	220102548	220102679	220102633	220102633	Frame_Shift_Del	A	-	p.L463fs
LIHC	TCGA-DD-A39Y-01	STK16	ENST00000409638.3,ENST00000496443.1,ENST00000396738.2,ENST00000409260.1,ENST00000409516.3,ENST00000478018.1	chr2	220112136:220112257:220112383:220112479:220112914:220113036,	220112384	220112479	220112416	220112416	Frame_Shift_Del	C	-	p.Y198fs
LIHC	TCGA-DD-A39Y-01	TUBA4A	ENST00000462806.1	chr2	220116308:220116435:220116729:220116952:220142535:220142598,220116310:220116435:220116729:220116952:220118577:220118623,	220116730	220116952	220116820	220116820	Frame_Shift_Del	C	-	p.D32fs
LIHC	TCGA-DD-A39Y-01	DNPEP	ENST00000457935.1	chr2	220249087:220249165:220250352:220250428:220250689:220250807,	220250353	220250428	220250422	220250422	Frame_Shift_Del	G	-	p.P199fs
LIHC	TCGA-DD-A39Y-01	SPEG	ENST00000312358.7,ENST00000485813.1	chr2	220355130:220355370:220355454:220355678:220356515:220356591,	220355455	220355678	220355642	220355642	Frame_Shift_Del	C	-	p.P3117fs
LIHC	TCGA-DD-A39Y-01	SLC4A3	ENST00000425141.1,ENST00000317151.3,ENST00000373760.2,ENST00000358055.3	chr2	220493865:220494143:220494301:220494417:220494874:220495074,	220494302	220494417	220494340	220494340	Frame_Shift_Del	C	-	p.L178fs
LIHC	TCGA-DD-A39Y-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220501023:220501172:220501401:220501596:220502302:220502517,	220501402	220501596	220501562	220501562	Frame_Shift_Del	T	-	p.I834fs
LIHC	TCGA-DD-A39Y-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3	chr2	220502302:220502533:220502885:220502975:220503424:220503591,	220502886	220502975	220502907	220502907	Frame_Shift_Del	T	-	p.F930fs
LIHC	TCGA-DD-A39Y-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222301780:222301842:222307548:222307734:222308212:222308326,	222307549	222307734	222307637	222307637	Frame_Shift_Del	T	-	p.K662fs
LIHC	TCGA-DD-A39Y-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223488990:223489198:223489432:223489494:223493555:223493607,	223489433	223489494	223489444	223489444	Frame_Shift_Del	T	-	p.K317fs
LIHC	TCGA-DD-A39Y-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223504298:223504414:223505580:223505650:223507569:223507626,	223505581	223505650	223505607	223505607	Frame_Shift_Del	T	-	p.I105fs
LIHC	TCGA-DD-A39Y-01	ACSL3	ENST00000392066.3,ENST00000357430.3	chr2	223789271:223789313:223791734:223791907:223793579:223793654,	223791735	223791907	223791899	223791899	Frame_Shift_Del	T	-	p.I486fs
LIHC	TCGA-DD-A39Y-01	SERPINE2	ENST00000447280.2,ENST00000409840.3,ENST00000478966.1,ENST00000409304.1	chr2	224842260:224842344:224845027:224845114:224847397:224847498,	224845028	224845114	224845105	224845105	Frame_Shift_Del	T	-	p.N332fs
LIHC	TCGA-DD-A39Y-01	SERPINE2	ENST00000258405.4	chr2	224842260:224842344:224845027:224845117:224847397:224847498,	224845028	224845117	224845105	224845105	Frame_Shift_Del	T	-	p.N332fs
LIHC	TCGA-DD-A39Y-01	DOCK10	ENST00000409592.3,ENST00000258390.7	chr2	225721576:225721699:225727380:225727463:225729269:225729392,	225727381	225727463	225727443	225727443	Frame_Shift_Del	T	-	p.K535fs
LIHC	TCGA-DD-A39Y-01	COL4A3	ENST00000469504.1,ENST00000396578.3	chr2	228173919:228174034:228175491:228175664:228176501:228176586,	228175492	228175664	228175644	228175644	Frame_Shift_Del	A	-	p.L1636fs
LIHC	TCGA-DD-A39Y-01	MFF	ENST00000476924.1,ENST00000470090.1,ENST00000530359.1,ENST00000531278.1,ENST00000534203.1,ENST00000524634.1	chr2	228190080:228190143:228197134:228197304:228205007:228205070,	228197135	228197304	228197155	228197155	Frame_Shift_Del	T	-	p.F94fs
LIHC	TCGA-DD-A39Y-01	AGFG1	ENST00000373671.3	chr2	228395806:228395926:228398264:228398474:228399623:228399741,228395806:228395926:228398264:228398474:228399560:228399593,228389477:228389631:228398264:228398474:228399560:228399593,	228398265	228398474	228398410	228398410	Frame_Shift_Del	T	-	p.G320fs
LIHC	TCGA-DD-A39Y-01	SLC19A3	ENST00000258403.3,ENST00000541617.1,ENST00000425817.1	chr2	228552881:228553023:228560604:228560797:228563451:228564280,	228560605	228560797	228560748	228560748	Frame_Shift_Del	A	-	p.L344fs
LIHC	TCGA-DD-A39Y-01	SLC19A3	ENST00000258403.3,ENST00000425817.1	chr2	228560604:228560797:228563451:228564280:228566884:228567036,	228563452	228564280	228563776	228563776	Frame_Shift_Del	C	-	p.E219fs
LIHC	TCGA-DD-A39Y-01	DAW1	ENST00000309931.2,ENST00000545118.1,ENST00000454999.1,ENST00000373666.2	chr2	228758510:228758633:228762897:228762997:228767717:228767802,	228762898	228762997	228762958	228762958	Frame_Shift_Del	A	-	p.G167fs
LIHC	TCGA-DD-A39Y-01	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231755	230231755	Frame_Shift_Del	G	-	p.L646fs
LIHC	TCGA-DD-A39Y-01	DNER	ENST00000341772.4	chr2	230312031:230312256:230341855:230341969:230377498:230377652,	230341856	230341969	230341909	230341909	Frame_Shift_Del	T	-	p.N403fs
LIHC	TCGA-DD-A39Y-01	FBXO36	ENST00000373652.3,ENST00000283946.3	chr2	230840956:230841065:230861466:230861639:230875411:230876996,	230861467	230861639	230861519	230861519	Frame_Shift_Del	G	-	p.L55fs
LIHC	TCGA-DD-A39Y-01	SP110	ENST00000358662.4,ENST00000540870.1,ENST00000258381.6,ENST00000338556.3,ENST00000258382.5,ENST00000392048.3	chr2	231048287:231048356:231050709:231050859:231065600:231065681,	231050710	231050859	231050748	231050748	Frame_Shift_Del	T	-	p.K414fs
LIHC	TCGA-DD-A39Y-01	SP140L	ENST00000444636.1,ENST00000483728.1,ENST00000415673.2,ENST00000243810.6	chr2	231253273:231253348:231254633:231254738:231256801:231256944,	231254634	231254738	231254648	231254648	Frame_Shift_Del	A	-	p.K292fs
LIHC	TCGA-DD-A39Y-01	SP140L	ENST00000415673.2	chr2	231264841:231264957:231265669:231265778:231266080:231266158,	231265670	231265778	231265682	231265682	Frame_Shift_Del	T	-	p.N442fs
LIHC	TCGA-DD-A39Y-01	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1	chr2	231313802:231313865:231314275:231314425:231314886:231314970,	231314276	231314425	231314408	231314408	Frame_Shift_Del	A	-	p.Q240fs
LIHC	TCGA-DD-A39Y-01	SP100	ENST00000452345.1	chr2	231333757:231333811:231334729:231334813:231338098:231338155,	231334730	231334813	231334747	231334747	Frame_Shift_Del	T	-	p.F455fs
LIHC	TCGA-DD-A39Y-01	SP100	ENST00000264052.5,ENST00000340126.4,ENST00000409112.1	chr2	231334729:231334813:231338038:231338155:231339108:231339162,	231338039	231338155	231338088	231338088	Frame_Shift_Del	T	-	p.C493fs
LIHC	TCGA-DD-A39Y-01	CAB39	ENST00000478152.1,ENST00000258418.5,ENST00000410084.3,ENST00000409788.3	chr2	231655612:231655751:231657927:231658046:231663443:231663612,	231657928	231658046	231657931	231657931	Frame_Shift_Del	A	-	p.K96fs
LIHC	TCGA-DD-A39Y-01	CAB39	ENST00000478152.1,ENST00000258418.5,ENST00000410084.3,ENST00000409788.3	chr2	231655612:231655751:231657927:231658046:231663443:231663612,	231657928	231658046	231657969	231657969	Frame_Shift_Del	A	-	p.R108fs
LIHC	TCGA-DD-A39Y-01	PSMD1	ENST00000308696.6,ENST00000409643.1,ENST00000373635.4	chr2	231926961:231927035:231927219:231927389:231931619:231931825,	231927220	231927389	231927298	231927298	Frame_Shift_Del	G	-	p.L71fs
LIHC	TCGA-DD-A39Y-01	PSMD1	ENST00000440838.1	chr2	231926961:231927035:231927219:231927407:231931619:231931825,	231927220	231927407	231927298	231927298	Frame_Shift_Del	G	-	p.L71fs
LIHC	TCGA-DD-A39Y-01	COPS7B	ENST00000409295.1,ENST00000488111.1,ENST00000410024.1,ENST00000449174.1,ENST00000350033.3,ENST00000413197.1,ENST00000412922.2,ENST00000409091.1,ENST00000474042.1	chr2	232660896:232661018:232663568:232663674:232672196:232672332,	232663569	232663674	232663596	232663596	Frame_Shift_Del	G	-	p.L186fs
LIHC	TCGA-DD-A39Y-01	KCNJ13	ENST00000438786.1	chr2	233633190:233633523:233635612:233635855:233641154:233641265,	233635613	233635855	233635798	233635798	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A39Y-01	KCNJ13	ENST00000409779.1	chr2	233633190:233633523:233635848:233636088:233641154:233641265,	233635849	233636088	233636052	233636052	Frame_Shift_Del	T	-	p.K7fs
LIHC	TCGA-DD-A39Y-01	GIGYF2	ENST00000409480.1,ENST00000409451.3,ENST00000373566.3	chr2	233626105:233626146:233641121:233641187:233651859:233651957,	233641122	233641187	233641168	233641168	Frame_Shift_Del	G	-	p.L193fs
LIHC	TCGA-DD-A39Y-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233697570:233697803:233704558:233704681:233708755:233708906,	233704559	233704681	233704611	233704611	Frame_Shift_Del	C	-	p.S962fs
LIHC	TCGA-DD-A39Y-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233710441:233710596:233712057:233712281:233714971:233715119,	233712058	233712281	233712156	233712156	Frame_Shift_Del	T	-	p.F1209fs
LIHC	TCGA-DD-A39Y-01	DGKD	ENST00000264057.2,ENST00000490764.1,ENST00000474488.1,ENST00000409813.3	chr2	234346022:234346125:234346862:234347025:234350532:234350641,	234346863	234347025	234346986	234346986	Frame_Shift_Del	C	-	p.A349fs
LIHC	TCGA-DD-A39Y-01	USP40	ENST00000450966.1,ENST00000430158.1,ENST00000427112.2,ENST00000251722.6	chr2	234398010:234398129:234399812:234399907:234402070:234402123,	234399813	234399907	234399878	234399878	Frame_Shift_Del	A	-	p.S982fs
LIHC	TCGA-DD-A39Y-01	USP40	ENST00000450966.1,ENST00000427112.2,ENST00000251722.6	chr2	234442124:234442425:234449307:234449412:234450913:234451009,	234449308	234449412	234449369	234449369	Frame_Shift_Del	A	-	p.L369fs
LIHC	TCGA-DD-A39Y-01	MROH2A	ENST00000389758.3	chr2	234727297:234727416:234727962:234728115:234728547:234728702,	234727963	234728115	234728077	234728077	Frame_Shift_Del	T	-	p.F1108fs
LIHC	TCGA-DD-A39Y-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951126	235951126	Frame_Shift_Del	C	-	p.R571fs
LIHC	TCGA-DD-A39Y-01	AGAP1	ENST00000448025.1,ENST00000428334.2,ENST00000304032.8	chr2	236792038:236792093:236817381:236817550:236877105:236877267,236792038:236792093:236817381:236817550:236839408:236839567,	236817382	236817550	236817496	236817496	Frame_Shift_Del	A	-	p.K689fs
LIHC	TCGA-DD-A39Y-01	IQCA1	ENST00000431676.2,ENST00000309507.5,ENST00000409907.3	chr2	237246847:237247025:237253199:237253286:237272422:237272622,	237253200	237253286	237253235	237253235	Frame_Shift_Del	T	-	p.T641fs
LIHC	TCGA-DD-A39Y-01	IQCA1	ENST00000309507.5,ENST00000418802.1,ENST00000254653.5	chr2	237289255:237289276:237300618:237300714:237300886:237300993,237289211:237289279:237300618:237300714:237300886:237300993,	237300619	237300714	237300626	237300626	Frame_Shift_Del	T	-	p.K469fs
LIHC	TCGA-DD-A39Y-01	IQCA1	ENST00000309507.5,ENST00000418802.1,ENST00000254653.5	chr2	237289255:237289276:237300618:237300714:237300886:237300993,237289211:237289279:237300618:237300714:237300886:237300993,	237300619	237300714	237300683	237300683	Frame_Shift_Del	T	-	p.N450fs
LIHC	TCGA-DD-A39Y-01	COL6A3	ENST00000353578.4,ENST00000392003.2,ENST00000295550.4,ENST00000409809.1,ENST00000392004.3,ENST00000347401.3	chr2	238285760:238285987:238287278:238287878:238289557:238290142,	238287279	238287878	238287819	238287819	Frame_Shift_Del	T	-	p.T653fs
LIHC	TCGA-DD-A39Y-01	MLPH	ENST00000478712.1,ENST00000338530.4,ENST00000437893.1,ENST00000264605.3,ENST00000468178.1,ENST00000445024.2,ENST00000432475.1,ENST00000410032.1,ENST00000464123.1	chr2	238449091:238449176:238449444:238449600:238451209:238451302,	238449445	238449600	238449479	238449479	Frame_Shift_Del	A	-	p.E442fs
LIHC	TCGA-DD-A39Y-01	LRRFIP1	ENST00000308482.9	chr2	238664737:238664830:238666098:238666191:238667371:238667464,	238666099	238666191	238666189	238666189	Frame_Shift_Del	G	-	p.G408fs
LIHC	TCGA-DD-A39Y-01	ILKAP	ENST00000463129.1,ENST00000479400.1,ENST00000254654.3,ENST00000457149.1	chr2	239092660:239092754:239093821:239093928:239096771:239096872,	239093822	239093928	239093845	239093845	Frame_Shift_Del	T	-	p.N170fs
LIHC	TCGA-DD-A39Y-01	PER2	ENST00000254658.3,ENST00000254657.3	chr2	239169468:239169594:239170369:239170478:239170831:239170985,	239170370	239170478	239170423	239170423	Frame_Shift_Del	G	-	p.L455fs
LIHC	TCGA-DD-A39Y-01	TRAF3IP1	ENST00000391993.3,ENST00000391994.2,ENST00000373327.4	chr2	239237571:239237983:239241464:239241536:239242600:239242676,	239241465	239241536	239241513	239241513	Frame_Shift_Del	A	-	p.K322fs
LIHC	TCGA-DD-A39Y-01	TRAF3IP1	ENST00000391994.2,ENST00000373327.4	chr2	239242600:239242676:239247002:239247098:239253137:239253239,	239247003	239247098	239247029	239247029	Frame_Shift_Del	A	-	p.K364fs
LIHC	TCGA-DD-A39Y-01	TRAF3IP1	ENST00000462122.1,ENST00000391993.3,ENST00000391994.2,ENST00000373327.4	chr2	239261813:239261850:239264644:239264721:239306099:239306320,	239264645	239264721	239264656	239264656	Frame_Shift_Del	A	-	p.K543fs
LIHC	TCGA-DD-A39Y-01	HDAC4	ENST00000543185.1,ENST00000487617.1,ENST00000345617.3	chr2	240009254:240009310:240011704:240011812:240016705:240016752,	240011705	240011812	240011713	240011713	Frame_Shift_Del	C	-	p.E789fs
LIHC	TCGA-DD-A39Y-01	HDAC4	ENST00000541256.1,ENST00000463007.1,ENST00000535493.1,ENST00000345617.3,ENST00000493582.1	chr2	240061379:240061492:240066278:240066410:240078347:240078469,	240066279	240066410	240066367	240066367	Frame_Shift_Del	T	-	p.K259fs
LIHC	TCGA-DD-A39Y-01	NDUFA10	ENST00000307300.4,ENST00000404554.1,ENST00000485344.2,ENST00000252711.2,ENST00000407129.3,ENST00000443626.1,ENST00000497536.1	chr2	240960613:240960829:240961588:240961757:240964643:240964723,	240961589	240961757	240961679	240961679	Frame_Shift_Del	T	-	p.R52fs
LIHC	TCGA-DD-A39Y-01	ANKMY1	ENST00000401804.1,ENST00000272972.3,ENST00000391987.1	chr2	241465220:241465266:241465645:241465862:241468453:241468926,	241465646	241465862	241465723	241465723	Frame_Shift_Del	A	-	p.C276fs
LIHC	TCGA-DD-A39Y-01	ANKMY1	ENST00000405002.1,ENST00000462004.1,ENST00000496300.1,ENST00000464991.1	chr2	241492450:241492474:241494282:241494472:241500147:241500185,	241494283	241494472	241494339	241494339	Frame_Shift_Del	C	-	p.E5fs
LIHC	TCGA-DD-A39Y-01	KIF1A	ENST00000404283.3,ENST00000498729.2	chr2	241689845:241689964:241696735:241697011:241697776:241697910,	241696736	241697011	241696755	241696755	Frame_Shift_Del	G	-	p.L947fs
LIHC	TCGA-DD-A39Y-01	HDLBP	ENST00000442714.1	chr2	242196128:242196221:242202283:242202341:242203862:242204020,	242202284	242202341	242202326	242202326	Frame_Shift_Del	G	-	p.L84fs
LIHC	TCGA-DD-A39Y-01	HDLBP	ENST00000422933.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000428482.1,ENST00000452065.1,ENST00000310931.4	chr2	242196179:242196221:242202125:242202341:242203862:242204020,	242202126	242202341	242202326	242202326	Frame_Shift_Del	G	-	p.L84fs
LIHC	TCGA-DD-A39Y-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242375895:242375953:242380718:242380971:242396161:242396337,	242380719	242380971	242380756	242380756	Frame_Shift_Del	C	-	p.S399fs
LIHC	TCGA-DD-A39Y-01	FARP2	ENST00000412332.1	chr2	242432807:242432859:242433422:242433556:242433891:242434255,	242433423	242433556	242433441	242433441	Frame_Shift_Del	G	-	p.Q1022fs
LIHC	TCGA-DD-A39Y-01	STK25	ENST00000483603.1	chr2	242440194:242440211:242440892:242441214:242447420:242447550,	242440893	242441214	242440926	242440926	Frame_Shift_Del	G	-	p.P76fs
LIHC	TCGA-DD-A39Y-01	STK25	ENST00000442307.1	chr2	242440194:242440211:242440892:242441123:242447919:242447997,242440194:242440211:242440892:242441123:242448637:242448713,242440194:242440211:242440892:242441123:242447420:242447550,242440194:242440211:242440892:242441123:242447857:242447971,	242440893	242441123	242440926	242440926	Frame_Shift_Del	G	-	p.P76fs
LIHC	TCGA-DD-A39Y-01	ATG4B	ENST00000482507.1,ENST00000404914.3,ENST00000474739.2,ENST00000396411.3,ENST00000344376.5,ENST00000429899.1,ENST00000405546.3,ENST00000402096.1	chr2	242594685:242594758:242598522:242598602:242606059:242606184,	242598523	242598602	242598597	242598597	Frame_Shift_Del	A	-	p.E178fs
LIHC	TCGA-DD-A39Y-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1424976:1425092:1427294:1427481:1443116:1443229,	1427295	1427481	1427450	1427450	Frame_Shift_Del	C	-	p.S891fs
LIHC	TCGA-DD-A39Y-01	TRNT1	ENST00000280591.6,ENST00000434583.1	chr3	3168648:3168674:3170697:3170872:3178943:3178981,	3170698	3170872	3170827	3170827	Frame_Shift_Del	C	-	p.P35fs
LIHC	TCGA-DD-A39Y-01	TRNT1	ENST00000280591.6	chr3	3186267:3186394:3188113:3188247:3189133:3189387,	3188114	3188247	3188179	3188179	Frame_Shift_Del	A	-	p.E225fs
LIHC	TCGA-DD-A39Y-01	TRNT1	ENST00000434583.1,ENST00000251607.6	chr3	3186267:3186394:3188113:3188307:3189133:3189387,	3188114	3188307	3188179	3188179	Frame_Shift_Del	A	-	p.E225fs
LIHC	TCGA-DD-A39Y-01	CRBN	ENST00000231948.4,ENST00000480249.1,ENST00000482844.1,ENST00000432408.2,ENST00000491834.1,ENST00000424814.1	chr3	3197902:3197965:3209317:3209477:3214459:3214607,	3209318	3209477	3209372	3209372	Frame_Shift_Del	T	-	p.K211fs
LIHC	TCGA-DD-A39Y-01	CRBN	ENST00000432408.2	chr3	3215742:3215945:3216846:3216950:3221304:3221358,	3216847	3216950	3216892	3216892	Frame_Shift_Del	T	-	p.K43fs
LIHC	TCGA-DD-A39Y-01	CRBN	ENST00000231948.4,ENST00000478353.1,ENST00000424814.1,ENST00000450014.1,ENST00000498700.1	chr3	3215742:3215945:3216846:3216953:3221304:3221358,	3216847	3216953	3216892	3216892	Frame_Shift_Del	T	-	p.K43fs
LIHC	TCGA-DD-A39Y-01	SETMAR	ENST00000425863.1	chr3	4345054:4345210:4354581:4354913:4355350:4355445,4345054:4345210:4354581:4354913:4355330:4355445,	4354582	4354913	4354769	4354769	Frame_Shift_Del	T	-	p.V115fs
LIHC	TCGA-DD-A39Y-01	SUMF1	ENST00000448413.1,ENST00000534863.1	chr3	4403792:4403938:4418013:4418073:4452548:4452662,4110252:4110429:4418013:4418073:4452548:4452662,	4418014	4418073	4418063	4418063	Frame_Shift_Del	G	-	p.P322fs
LIHC	TCGA-DD-A39Y-01	SSUH2	ENST00000420394.1,ENST00000544814.1,ENST00000413305.1,ENST00000435138.1,ENST00000415132.1,ENST00000495366.1,ENST00000455157.2,ENST00000317371.4,ENST00000341795.3	chr3	8665234:8665342:8667227:8667333:8667914:8668007,	8667228	8667333	8667235	8667235	Frame_Shift_Del	T	-	p.N267fs
LIHC	TCGA-DD-A39Y-01	SSUH2	ENST00000420394.1,ENST00000544814.1,ENST00000413305.1,ENST00000435138.1,ENST00000415132.1,ENST00000495366.1,ENST00000455157.2,ENST00000317371.4,ENST00000341795.3	chr3	8669383:8669469:8671349:8671412:8672490:8672615,	8671350	8671412	8671378	8671378	Frame_Shift_Del	T	-	p.K165fs
LIHC	TCGA-DD-A39Y-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944121	8944121	Frame_Shift_Del	T	-	p.T371fs
LIHC	TCGA-DD-A39Y-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944155	8944155	Frame_Shift_Del	T	-	p.K359fs
LIHC	TCGA-DD-A39Y-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944197	8944197	Frame_Shift_Del	T	-	p.K345fs
LIHC	TCGA-DD-A39Y-01	SETD5	ENST00000407969.1	chr3	9471656:9471735:9475528:9475634:9476017:9476169,9470608:9470693:9475528:9475634:9475960:9476169,	9475529	9475634	9475626	9475626	Frame_Shift_Del	C	-	p.P57fs
LIHC	TCGA-DD-A39Y-01	MTMR14	ENST00000414996.1,ENST00000351233.5,ENST00000353332.5,ENST00000296003.4,ENST00000420925.1	chr3	9726894:9726931:9729504:9729575:9730379:9730438,	9729505	9729575	9729525	9729525	Frame_Shift_Del	T	-	p.N395fs
LIHC	TCGA-DD-A39Y-01	BRPF1	ENST00000457855.1,ENST00000383829.2,ENST00000302054.3,ENST00000424362.1	chr3	9785264:9785585:9785907:9786192:9786691:9786839,	9785908	9786192	9786049	9786049	Frame_Shift_Del	C	-	p.T926fs
LIHC	TCGA-DD-A39Y-01	OGG1	ENST00000302036.7,ENST00000339511.5,ENST00000429146.1,ENST00000302008.8,ENST00000344629.7,ENST00000449570.2,ENST00000383826.5,ENST00000349503.5	chr3	9792038:9792107:9792628:9792876:9793453:9793633,	9792629	9792876	9792829	9792829	Frame_Shift_Del	G	-	p.W113fs
LIHC	TCGA-DD-A39Y-01	TADA3	ENST00000440161.1,ENST00000301964.2,ENST00000343450.2,ENST00000492103.1	chr3	9825711:9825897:9826999:9827109:9828689:9828793,	9827000	9827109	9827046	9827046	Frame_Shift_Del	C	-	p.A292fs
LIHC	TCGA-DD-A39Y-01	TADA3	ENST00000440161.1,ENST00000301964.2,ENST00000343450.2	chr3	9831192:9831298:9831396:9831647:9832943:9833065,	9831397	9831647	9831558	9831558	Frame_Shift_Del	C	-	p.G99fs
LIHC	TCGA-DD-A39Y-01	TTLL3	ENST00000473661.1	chr3	9868680:9868756:9868898:9868924:9870643:9871079,	9868899	9868924	9868906	9868906	Frame_Shift_Del	C	-	p.S155fs
LIHC	TCGA-DD-A39Y-01	IL17RC	ENST00000490512.1,ENST00000412901.1,ENST00000438091.1,ENST00000436503.1	chr3	9959610:9959759:9960183:9960293:9962174:9962284,	9960184	9960293	9960224	9960224	Frame_Shift_Del	C	-	p.Y203fs
LIHC	TCGA-DD-A39Y-01	IL17RC	ENST00000416074.2,ENST00000451231.1	chr3	9959610:9959759:9960218:9960293:9962174:9962284,	9960219	9960293	9960224	9960224	Frame_Shift_Del	C	-	p.Y203fs
LIHC	TCGA-DD-A39Y-01	IL17RC	ENST00000494365.1	chr3	9971535:9971581:9971711:9971833:9972083:9972128,9971535:9971581:9971711:9971833:9972578:9972627,	9971712	9971833	9971778	9971778	Frame_Shift_Del	C	-	p.S479fs
LIHC	TCGA-DD-A39Y-01	CRELD1	ENST00000326434.5	chr3	9985165:9985199:9985585:9985779:9986048:9986107,	9985586	9985779	9985641	9985641	Frame_Shift_Del	G	-	p.L368fs
LIHC	TCGA-DD-A39Y-01	CRELD1	ENST00000326434.5	chr3	9985165:9985199:9985585:9985779:9986048:9986107,	9985586	9985779	9985651	9985651	Frame_Shift_Del	C	-	p.P372fs
LIHC	TCGA-DD-A39Y-01	FANCD2	ENST00000287647.3,ENST00000431693.1,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1,ENST00000438741.1	chr3	10077970:10078023:10080962:10081041:10081404:10081529,	10080963	10081041	10081011	10081011	Frame_Shift_Del	A	-	p.L180fs
LIHC	TCGA-DD-A39Y-01	GHRL	ENST00000449554.2,ENST00000335542.8,ENST00000457360.1,ENST00000287656.7,ENST00000429122.1,ENST00000481287.1,ENST00000430179.1,ENST00000437422.2,ENST00000449238.2,ENST00000491589.1,ENST00000450603.1	chr3	10327496:10327578:10328387:10328496:10331445:10331491,	10328388	10328496	10328400	10328400	Frame_Shift_Del	C	-	p.E109fs
LIHC	TCGA-DD-A39Y-01	ATG7	ENST00000434066.2	chr3	11356817:11356967:11372813:11372902:11374445:11374567,11356817:11356967:11372813:11372902:11382118:11382209,	11372814	11372902	11372876	11372876	Frame_Shift_Del	T	-	p.N247fs
LIHC	TCGA-DD-A39Y-01	ATG7	ENST00000354449.3,ENST00000446450.2,ENST00000354956.5	chr3	11399891:11400086:11402054:11402258:11404286:11404402,	11402055	11402258	11402075	11402075	Frame_Shift_Del	G	-	p.L500fs
LIHC	TCGA-DD-A39Y-01	ATG7	ENST00000414717.1,ENST00000354449.3,ENST00000446110.1,ENST00000427759.1	chr3	11406132:11406208:11421445:11421526:11468277:11468400,	11421446	11421526	11421450	11421450	Frame_Shift_Del	G	-	p.R627fs
LIHC	TCGA-DD-A39Y-01	TAMM41	ENST00000444133.2,ENST00000455809.1	chr3	11849306:11849369:11850990:11851156:11858665:11858811,	11850991	11851156	11851059	11851059	Frame_Shift_Del	T	-	p.N269fs
LIHC	TCGA-DD-A39Y-01	TAMM41	ENST00000444133.2,ENST00000455809.1	chr3	11849306:11849369:11850990:11851156:11858665:11858811,	11850991	11851156	11851147	11851147	Frame_Shift_Del	T	-	p.S240fs
LIHC	TCGA-DD-A39Y-01	PPARG	ENST00000397023.1,ENST00000309576.6,ENST00000397015.2,ENST00000397010.2,ENST00000397026.2,ENST00000287820.6,ENST00000397012.2	chr3	12447380:12447580:12458202:12458653:12475396:12475715,	12458203	12458653	12458270	12458270	Frame_Shift_Del	C	-	p.T274fs
LIHC	TCGA-DD-A39Y-01	HDAC11	ENST00000433119.1	chr3	13524963:13525064:13538235:13538352:13540012:13540055,13524966:13525064:13538235:13538352:13542212:13542289,	13538236	13538352	13538268	13538268	Frame_Shift_Del	C	-	p.I95fs
LIHC	TCGA-DD-A39Y-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612531	13612531	Frame_Shift_Del	G	-	p.G227fs
LIHC	TCGA-DD-A39Y-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13669331:13669469:13670404:13670548:13670663:13670792,	13670405	13670548	13670536	13670536	Frame_Shift_Del	A	-	p.T901fs
LIHC	TCGA-DD-A39Y-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670781	13670781	Frame_Shift_Del	G	-	p.R944fs
LIHC	TCGA-DD-A39Y-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13672828:13672957:13677944:13678068:13679061:13679072,	13677945	13678068	13677969	13677969	Frame_Shift_Del	C	-	p.T1080fs
LIHC	TCGA-DD-A39Y-01	SLC6A6	ENST00000360861.3,ENST00000427436.1,ENST00000416216.2	chr3	14457919:14457961:14485131:14485371:14487224:14487324,	14485132	14485371	14485221	14485221	Frame_Shift_Del	G	-	p.G27fs
LIHC	TCGA-DD-A39Y-01	SLC6A6	ENST00000458124.1,ENST00000454876.2	chr3	14457919:14457961:14485135:14485371:14487224:14487324,	14485136	14485371	14485221	14485221	Frame_Shift_Del	G	-	p.G27fs
LIHC	TCGA-DD-A39Y-01	SH3BP5	ENST00000253688.5,ENST00000408919.3,ENST00000383791.3,ENST00000450625.1	chr3	15303667:15303796:15311219:15311384:15345609:15345738,	15311220	15311384	15311364	15311364	Frame_Shift_Del	T	-	p.K117fs
LIHC	TCGA-DD-A39Y-01	COLQ	ENST00000383788.5,ENST00000383781.4,ENST00000435459.2,ENST00000383787.2,ENST00000603808.1,ENST00000383786.5,ENST00000383785.2	chr3	15497966:15498086:15499692:15499832:15507847:15507944,	15499693	15499832	15499731	15499731	Frame_Shift_Del	C	-	p.E306fs
LIHC	TCGA-DD-A39Y-01	COLQ	ENST00000605797.1,ENST00000383788.5,ENST00000383781.4,ENST00000435459.2,ENST00000603808.1,ENST00000383786.5,ENST00000383785.2	chr3	15518632:15518704:15520483:15520510:15520844:15520881,	15520484	15520510	15520507	15520507	Frame_Shift_Del	C	-	p.E124fs
LIHC	TCGA-DD-A39Y-01	GALNT15	ENST00000339732.5,ENST00000437509.1	chr3	16252630:16252748:16254075:16254270:16260909:16261041,	16254076	16254270	16254155	16254155	Frame_Shift_Del	C	-	p.S426fs
LIHC	TCGA-DD-A39Y-01	TBC1D5	ENST00000446818.2,ENST00000429924.2	chr3	17255698:17255862:17275176:17275242:17279654:17279749,	17275177	17275242	17275198	17275198	Frame_Shift_Del	G	-	p.Q545fs
LIHC	TCGA-DD-A39Y-01	TBC1D5	ENST00000429383.4,ENST00000253692.7,ENST00000414318.2	chr3	17255698:17255862:17279654:17279911:17299997:17300083,	17279655	17279911	17279831	17279831	Frame_Shift_Del	G	-	p.P471fs
LIHC	TCGA-DD-A39Y-01	KCNH8	ENST00000452398.1	chr3	19190025:19190287:19295145:19295379:19322689:19322821,	19295146	19295379	19295320	19295320	Frame_Shift_Del	A	-	p.E84fs
LIHC	TCGA-DD-A39Y-01	KCNH8	ENST00000328405.2	chr3	19491597:19491797:19492646:19492896:19498259:19498474,	19492647	19492896	19492793	19492793	Frame_Shift_Del	G	-	p.P574fs
LIHC	TCGA-DD-A39Y-01	EFHB	ENST00000295824.9,ENST00000344838.4	chr3	19925916:19926107:19929935:19930143:19938178:19938333,	19929936	19930143	19930120	19930120	Frame_Shift_Del	T	-	p.K583fs
LIHC	TCGA-DD-A39Y-01	KAT2B	ENST00000426228.1,ENST00000263754.4	chr3	20113824:20113951:20136754:20136900:20141353:20141446,	20136755	20136900	20136874	20136874	Frame_Shift_Del	A	-	p.K184fs
LIHC	TCGA-DD-A39Y-01	KAT2B	ENST00000263754.4	chr3	20167396:20167605:20168914:20169041:20178433:20178544,	20168915	20169041	20168922	20168922	Frame_Shift_Del	A	-	p.K544fs
LIHC	TCGA-DD-A39Y-01	KAT2B	ENST00000263754.4	chr3	20189739:20189798:20189894:20189979:20193823:20195896,	20189895	20189979	20189972	20189972	Frame_Shift_Del	C	-	p.F766fs
LIHC	TCGA-DD-A39Y-01	ZNF385D	ENST00000281523.2	chr3	21465454:21465556:21466983:21467162:21478461:21478695,	21466984	21467162	21467045	21467045	Frame_Shift_Del	T	-	p.N264fs
LIHC	TCGA-DD-A39Y-01	ZNF385D	ENST00000446749.1	chr3	21606093:21606176:21706377:21706520:21792386:21792606,	21706378	21706520	21706424	21706424	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-DD-A39Y-01	THRB	ENST00000453729.2,ENST00000447875.1,ENST00000416420.1,ENST00000431815.1,ENST00000396671.2,ENST00000356447.4,ENST00000415021.1,ENST00000447414.1	chr3	24193953:24193981:24231564:24231825:24270428:24270492,	24231565	24231825	24231580	24231580	Frame_Shift_Del	C	-	p.E90fs
LIHC	TCGA-DD-A39Y-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25660144:25660340:25661352:25661553:25662172:25662307,	25661353	25661553	25661392	25661392	Frame_Shift_Del	T	-	p.K1003fs
LIHC	TCGA-DD-A39Y-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25672291:25672430:25673936:25674074:25674183:25674285,	25673937	25674074	25674067	25674067	Frame_Shift_Del	T	-	p.N374fs
LIHC	TCGA-DD-A39Y-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000417874.2,ENST00000280699.9	chr3	25775362:25775473:25777494:25777640:25778824:25778946,	25777495	25777640	25777506	25777506	Frame_Shift_Del	A	-	p.S380fs
LIHC	TCGA-DD-A39Y-01	NGLY1	ENST00000493324.1	chr3	25775362:25775473:25777799:25778946:25781067:25781290,	25777800	25778946	25777838	25777838	Frame_Shift_Del	T	-	p.T353fs
LIHC	TCGA-DD-A39Y-01	NGLY1	ENST00000308710.5,ENST00000428257.1	chr3	25775362:25775473:25777799:25777891:25778824:25778946,	25777800	25777891	25777838	25777838	Frame_Shift_Del	T	-	p.T353fs
LIHC	TCGA-DD-A39Y-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781223	25781223	Frame_Shift_Del	A	-	p.F242fs
LIHC	TCGA-DD-A39Y-01	OXSM	ENST00000448177.1	chr3	25831584:25831638:25832480:25832806:25833260:25833332,	25832481	25832806	25832602	25832602	Frame_Shift_Del	T	-	p.F32fs
LIHC	TCGA-DD-A39Y-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25832602	25832602	Frame_Shift_Del	T	-	p.F32fs
LIHC	TCGA-DD-A39Y-01	SLC4A7	ENST00000440156.1,ENST00000454389.1,ENST00000428386.1,ENST00000455077.1,ENST00000419036.1,ENST00000437179.1,ENST00000295736.5,ENST00000428179.1,ENST00000446700.1,ENST00000388777.4,ENST00000435667.2,ENST00000445684.1	chr3	27446320:27446454:27450846:27451021:27453132:27453239,	27450847	27451021	27450974	27450974	Frame_Shift_Del	A	-	p.F596fs
LIHC	TCGA-DD-A39Y-01	SLC4A7	ENST00000437266.1,ENST00000425128.2,ENST00000457377.1,ENST00000438530.1	chr3	27446320:27446454:27453132:27453239:27459976:27460123,	27453133	27453239	27453177	27453177	Frame_Shift_Del	T	-	p.K565fs
LIHC	TCGA-DD-A39Y-01	STT3B	ENST00000488151.1,ENST00000295770.2	chr3	31670813:31670903:31674426:31674639:31677475:31677537,	31674427	31674639	31674442	31674442	Frame_Shift_Del	C	-	p.P736fs
LIHC	TCGA-DD-A39Y-01	STT3B	ENST00000463044.1	chr3	31670813:31670903:31674426:31674676:31677475:31677537,	31674427	31674676	31674442	31674442	Frame_Shift_Del	C	-	p.P736fs
LIHC	TCGA-DD-A39Y-01	STT3B	ENST00000488151.1,ENST00000295770.2	chr3	31670813:31670903:31674426:31674639:31677475:31677537,	31674427	31674639	31674450	31674450	Frame_Shift_Del	T	-	p.G737fs
LIHC	TCGA-DD-A39Y-01	STT3B	ENST00000463044.1	chr3	31670813:31670903:31674426:31674676:31677475:31677537,	31674427	31674676	31674450	31674450	Frame_Shift_Del	T	-	p.G737fs
LIHC	TCGA-DD-A39Y-01	GPD1L	ENST00000429432.1,ENST00000282541.5,ENST00000431009.1	chr3	32169567:32169745:32180078:32180219:32181719:32181853,	32180079	32180219	32180130	32180130	Frame_Shift_Del	T	-	p.F93fs
LIHC	TCGA-DD-A39Y-01	GPD1L	ENST00000282541.5,ENST00000428684.1	chr3	32188113:32188226:32200367:32200601:32201059:32201107,	32200368	32200601	32200445	32200445	Frame_Shift_Del	G	-	p.L232fs
LIHC	TCGA-DD-A39Y-01	CMTM7	ENST00000465248.1	chr3	32433530:32433557:32483331:32483505:32493883:32493965,32433530:32433557:32483331:32483505:32490945:32491032,32433530:32433557:32483331:32483505:32495732:32495850,	32483332	32483505	32483483	32483483	Frame_Shift_Del	C	-	p.T104fs
LIHC	TCGA-DD-A39Y-01	CNOT10	ENST00000463006.1,ENST00000538368.1,ENST00000485136.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5	chr3	32745359:32745454:32746302:32746464:32750161:32750267,	32746303	32746464	32746399	32746399	Frame_Shift_Del	T	-	p.F73fs
LIHC	TCGA-DD-A39Y-01	CNOT10	ENST00000463006.1,ENST00000538368.1,ENST00000485136.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5	chr3	32745359:32745454:32746302:32746464:32750161:32750267,	32746303	32746464	32746439	32746439	Frame_Shift_Del	A	-	p.Q85fs
LIHC	TCGA-DD-A39Y-01	CNOT10	ENST00000538368.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000416457.1	chr3	32766941:32767091:32769159:32769362:32774914:32775036,	32769160	32769362	32769180	32769180	Frame_Shift_Del	C	-	p.P345fs
LIHC	TCGA-DD-A39Y-01	CRTAP	ENST00000320954.6,ENST00000485310.1	chr3	33165899:33166071:33171430:33171559:33174046:33174092,	33171431	33171559	33171457	33171457	Frame_Shift_Del	A	-	p.K274fs
LIHC	TCGA-DD-A39Y-01	ARPP21	ENST00000417925.1,ENST00000458225.1,ENST00000187397.4,ENST00000481854.1	chr3	35758792:35758849:35763096:35763326:35770794:35770828,	35763097	35763326	35763227	35763227	Frame_Shift_Del	C	-	p.P376fs
LIHC	TCGA-DD-A39Y-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36896883	36896883	Frame_Shift_Del	G	-	p.Q1400fs
LIHC	TCGA-DD-A39Y-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897154	36897154	Frame_Shift_Del	A	-	p.F1309fs
LIHC	TCGA-DD-A39Y-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897427	36897427	Frame_Shift_Del	A	-	p.F1218fs
LIHC	TCGA-DD-A39Y-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897576	36897576	Frame_Shift_Del	A	-	p.S1169fs
LIHC	TCGA-DD-A39Y-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897747	36897747	Frame_Shift_Del	G	-	p.Q1112fs
LIHC	TCGA-DD-A39Y-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000456676.2,ENST00000536378.1,ENST00000441265.1,ENST00000231790.2,ENST00000455445.2	chr3	37055922:37056035:37058996:37059090:37067127:37067498,37055922:37056035:37058996:37059090:37061800:37061954,	37058997	37059090	37059085	37059085	Frame_Shift_Del	C	-	p.Y293fs
LIHC	TCGA-DD-A39Y-01	MLH1	ENST00000447829.1	chr3	37058996:37059090:37061800:37061954:37067127:37067498,37055922:37056035:37061800:37061954:37067127:37067410,	37061801	37061954	37061814	37061814	Frame_Shift_Del	C	-	p.P300fs
LIHC	TCGA-DD-A39Y-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000456676.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37061800:37061954:37067127:37067498:37070274:37070338,	37067128	37067498	37067396	37067396	Frame_Shift_Del	C	-	p.A436fs
LIHC	TCGA-DD-A39Y-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37163156:37163182:37169120:37169171:37170553:37170640,	37169121	37169171	37169140	37169140	Frame_Shift_Del	C	-	p.G70fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000444882.1,ENST00000419177.3	chr3	37284914:37285113:37292885:37292975:37315026:37315092,37284914:37285113:37292885:37292975:37323448:37323476,	37292886	37292975	37292937	37292937	Frame_Shift_Del	T	-	p.F42fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365206	37365206	Frame_Shift_Del	A	-	p.E610fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365716	37365716	Frame_Shift_Del	A	-	p.E780fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366235	37366235	Frame_Shift_Del	A	-	p.E953fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366291	37366291	Frame_Shift_Del	A	-	p.K973fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366996	37366996	Frame_Shift_Del	A	-	p.K1208fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367176	37367176	Frame_Shift_Del	A	-	p.K1267fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367594	37367594	Frame_Shift_Del	A	-	p.E1406fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368617	37368617	Frame_Shift_Del	A	-	p.E1747fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37369056	37369056	Frame_Shift_Del	A	-	p.R1893fs
LIHC	TCGA-DD-A39Y-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37381614:37381690:37388683:37388787:37396591:37396678,	37388684	37388787	37388748	37388748	Frame_Shift_Del	A	-	p.R2179fs
LIHC	TCGA-DD-A39Y-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38087033:38087184:38101232:38101343:38103659:38103859,	38101233	38101343	38101293	38101293	Frame_Shift_Del	C	-	p.S208fs
LIHC	TCGA-DD-A39Y-01	SCN5A	ENST00000413689.1,ENST00000443581.1,ENST00000455624.2,ENST00000423572.2,ENST00000333535.4,ENST00000449557.2,ENST00000451551.2,ENST00000450102.2	chr3	38597931:38598069:38598721:38598775:38601637:38601836,	38598722	38598775	38598767	38598767	Frame_Shift_Del	A	-	p.F1418fs
LIHC	TCGA-DD-A39Y-01	GORASP1	ENST00000453680.1,ENST00000470910.1,ENST00000437458.1,ENST00000416741.1,ENST00000441302.2,ENST00000319283.3,ENST00000452389.2,ENST00000431601.1	chr3	39142513:39142593:39144168:39144372:39144963:39145002,	39144169	39144372	39144337	39144337	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A39Y-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2,ENST00000431162.2,ENST00000493856.1,ENST00000472866.2	chr3	39175708:39175819:39176583:39176665:39177847:39177998,	39176584	39176665	39176607	39176607	Frame_Shift_Del	A	-	p.R970fs
LIHC	TCGA-DD-A39Y-01	EIF1B	ENST00000488260.1	chr3	40351316:40351463:40352383:40352547:40352960:40353062,	40352384	40352547	40352421	40352421	Frame_Shift_Del	C	-	p.L23fs
LIHC	TCGA-DD-A39Y-01	ENTPD3	ENST00000456402.1,ENST00000301825.3	chr3	40464827:40464892:40465316:40465454:40468762:40468999,	40465317	40465454	40465331	40465331	Frame_Shift_Del	C	-	p.L410fs
LIHC	TCGA-DD-A39Y-01	ENTPD3	ENST00000456402.1,ENST00000301825.3	chr3	40464827:40464892:40465316:40465454:40468762:40468999,	40465317	40465454	40465447	40465447	Frame_Shift_Del	A	-	p.E449fs
LIHC	TCGA-DD-A39Y-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000488914.1,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41266016:41266244:41266444:41266698:41266824:41267047,	41266445	41266698	41266674	41266674	Frame_Shift_Del	A	-	p.T157fs
LIHC	TCGA-DD-A39Y-01	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000438259.2,ENST00000443646.1,ENST00000325123.4,ENST00000439910.1	chr3	42573294:42573361:42573733:42573825:42576466:42576596,	42573734	42573825	42573788	42573788	Frame_Shift_Del	C	-	p.P285fs
LIHC	TCGA-DD-A39Y-01	SNRK	ENST00000429705.2	chr3	43328077:43328167:43344589:43345284:43373660:43373802,	43344590	43345284	43344814	43344814	Frame_Shift_Del	A	-	p.E40fs
LIHC	TCGA-DD-A39Y-01	ANO10	ENST00000414522.2,ENST00000350459.4,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43591211:43591340:43596769:43596961:43602711:43602894,	43596770	43596961	43596812	43596812	Frame_Shift_Del	T	-	p.K542fs
LIHC	TCGA-DD-A39Y-01	ANO10	ENST00000414522.2,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43616300:43616356:43618183:43618753:43621844:43621964,	43618184	43618753	43618507	43618507	Frame_Shift_Del	T	-	p.K280fs
LIHC	TCGA-DD-A39Y-01	ZKSCAN7	ENST00000273320.3,ENST00000447279.1,ENST00000431636.1,ENST00000341840.3,ENST00000496563.1,ENST00000426540.1	chr3	44606978:44607147:44609403:44609495:44609798:44609925,	44609404	44609495	44609454	44609454	Frame_Shift_Del	G	-	p.D215fs
LIHC	TCGA-DD-A39Y-01	ZNF197	ENST00000383744.4,ENST00000344387.4	chr3	44666586:44666635:44670565:44671036:44672553:44672713,	44670566	44671036	44670666	44670666	Frame_Shift_Del	C	-	p.A7fs
LIHC	TCGA-DD-A39Y-01	ZNF197	ENST00000383745.2	chr3	44666586:44666635:44670556:44671036:44672553:44672713,	44670557	44671036	44670666	44670666	Frame_Shift_Del	C	-	p.A7fs
LIHC	TCGA-DD-A39Y-01	KIF15	ENST00000438321.1,ENST00000326047.4	chr3	44822376:44822414:44826336:44826434:44827886:44828066,	44826337	44826434	44826383	44826383	Frame_Shift_Del	C	-	p.I136fs
LIHC	TCGA-DD-A39Y-01	KIF15	ENST00000438321.1,ENST00000425755.1,ENST00000326047.4,ENST00000453693.1	chr3	44879766:44879913:44881846:44881948:44882565:44882730,	44881847	44881948	44881898	44881898	Frame_Shift_Del	A	-	p.K1124fs
LIHC	TCGA-DD-A39Y-01	TGM4	ENST00000422219.1	chr3	44926816:44926990:44932094:44932224:44935068:44935187,	44932095	44932224	44932117	44932117	Frame_Shift_Del	C	-	p.S108fs
LIHC	TCGA-DD-A39Y-01	TGM4	ENST00000422219.1	chr3	44926816:44926990:44932094:44932224:44935068:44935187,	44932095	44932224	44932221	44932221	Frame_Shift_Del	A	-	p.K143fs
LIHC	TCGA-DD-A39Y-01	TGM4	ENST00000422219.1,ENST00000296125.4	chr3	44935068:44935187:44938200:44938308:44943015:44943062,	44938201	44938308	44938275	44938275	Frame_Shift_Del	C	-	p.D208fs
LIHC	TCGA-DD-A39Y-01	ZDHHC3	ENST00000296127.3,ENST00000479314.1	chr3	44970797:44970928:44974398:44974482:44974609:44974690,	44974399	44974482	44974426	44974426	Frame_Shift_Del	T	-	p.M223fs
LIHC	TCGA-DD-A39Y-01	CDCP1	ENST00000425231.2	chr3	45153828:45153937:45159903:45160113:45187697:45187914,	45159904	45160113	45159929	45159929	Frame_Shift_Del	A	-	p.F89fs
LIHC	TCGA-DD-A39Y-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000265537.3	chr3	45500234:45500378:45515734:45515842:45517959:45518119,	45515735	45515842	45515839	45515839	Frame_Shift_Del	A	-	p.L285fs
LIHC	TCGA-DD-A39Y-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000265537.3	chr3	45537766:45537865:45541933:45542071:45554626:45554727,	45541934	45542071	45542039	45542039	Frame_Shift_Del	T	-	p.H576fs
LIHC	TCGA-DD-A39Y-01	SACM1L	ENST00000389061.5,ENST00000455997.1,ENST00000463237.1,ENST00000445499.1,ENST00000464524.1,ENST00000418611.1,ENST00000478586.1	chr3	45746626:45746701:45748271:45748399:45750989:45751135,	45748272	45748399	45748348	45748348	Frame_Shift_Del	T	-	p.D94fs
LIHC	TCGA-DD-A39Y-01	LZTFL1	ENST00000536047.1,ENST00000411866.1,ENST00000296135.6,ENST00000418700.1,ENST00000448111.1,ENST00000539217.1	chr3	45869930:45870107:45872404:45872482:45872564:45872630,	45872405	45872482	45872444	45872444	Frame_Shift_Del	T	-	p.K187fs
LIHC	TCGA-DD-A39Y-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2	chr3	46477691:46477720:46479430:46479620:46480786:46480971,	46479431	46479620	46479553	46479553	Frame_Shift_Del	T	-	p.N659fs
LIHC	TCGA-DD-A39Y-01	PTH1R	ENST00000428220.1	chr3	46940151:46940347:46940792:46940946:46942514:46942575,46940151:46940347:46940792:46940946:46942903:46942970,	46940793	46940946	46940824	46940824	Frame_Shift_Del	T	-	p.L289fs
LIHC	TCGA-DD-A39Y-01	NBEAL2	ENST00000292309.5,ENST00000383740.2,ENST00000416683.1,ENST00000450053.3,ENST00000443829.1	chr3	47045984:47046080:47046461:47046586:47046670:47046811,	47046462	47046586	47046557	47046557	Frame_Shift_Del	C	-	p.N2130fs
LIHC	TCGA-DD-A39Y-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618333	47618333	Frame_Shift_Del	C	-	p.A395fs
LIHC	TCGA-DD-A39Y-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618739	47618739	Frame_Shift_Del	G	-	p.P259fs
LIHC	TCGA-DD-A39Y-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47747898:47748020:47752172:47752298:47755904:47755980,	47752173	47752298	47752203	47752203	Frame_Shift_Del	A	-	p.F296fs
LIHC	TCGA-DD-A39Y-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47777523:47777616:47787397:47787483:47814306:47814426,47779518:47779600:47787397:47787483:47814306:47814426,	47787398	47787483	47787410	47787410	Frame_Shift_Del	T	-	p.N130fs
LIHC	TCGA-DD-A39Y-01	MAP4	ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47898920:47899002:47908735:47908828:47912302:47912595,47898920:47899002:47908735:47908828:47910703:47910817,	47908736	47908828	47908808	47908808	Frame_Shift_Del	T	-	p.K2143fs
LIHC	TCGA-DD-A39Y-01	MAP4	ENST00000360240.6,ENST00000395734.3	chr3	47918906:47919013:47956306:47956429:47957440:47958031,	47956307	47956429	47956405	47956405	Frame_Shift_Del	T	-	p.K651fs
LIHC	TCGA-DD-A39Y-01	MAP4	ENST00000426837.2,ENST00000360240.6,ENST00000395734.3	chr3	47956306:47956429:47957440:47958664:47960208:47960241,	47957441	47958664	47957896	47957896	Frame_Shift_Del	G	-	p.P491fs
LIHC	TCGA-DD-A39Y-01	MAP4	ENST00000383737.4,ENST00000426837.2,ENST00000360240.6,ENST00000395734.3	chr3	47958359:47958664:47960208:47960331:47969717:47969792,47958377:47958664:47960208:47960331:47963254:47963368,	47960209	47960331	47960274	47960274	Frame_Shift_Del	T	-	p.N213fs
LIHC	TCGA-DD-A39Y-01	MAP4	ENST00000439356.1,ENST00000360240.6,ENST00000395734.3	chr3	48019354:48019423:48040127:48040369:48130262:48130314,	48040128	48040369	48040322	48040322	Frame_Shift_Del	A	-	p.L10fs
LIHC	TCGA-DD-A39Y-01	ZNF589	ENST00000427617.2	chr3	48289114:48289167:48302302:48302429:48309407:48309650,48289114:48289167:48302302:48302429:48309404:48309471,48289114:48289167:48302302:48302429:48327735:48328120,	48302303	48302429	48302387	48302387	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A39Y-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000485535.1,ENST00000448774.2,ENST00000483676.1,ENST00000456774.1,ENST00000358536.4	chr3	48448433:48448498:48450736:48450884:48450978:48451127,	48450737	48450884	48450849	48450849	Frame_Shift_Del	T	-	p.N1992fs
LIHC	TCGA-DD-A39Y-01	COL7A1	ENST00000454817.1,ENST00000328333.8	chr3	48630788:48630882:48630969:48631129:48631800:48631981,	48630970	48631129	48631094	48631094	Frame_Shift_Del	C	-	p.G101fs
LIHC	TCGA-DD-A39Y-01	SLC26A6	ENST00000395550.2,ENST00000489483.1,ENST00000414944.1,ENST00000383733.3,ENST00000496469.1,ENST00000337000.8,ENST00000421649.1,ENST00000358747.6,ENST00000420764.2,ENST00000444531.1,ENST00000480524.1,ENST00000455886.2,ENST00000307364.6	chr3	48667895:48667948:48668039:48668153:48668425:48668559,	48668040	48668153	48668050	48668050	Frame_Shift_Del	C	-	p.G392fs
LIHC	TCGA-DD-A39Y-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48687912:48688014:48688324:48688508:48688791:48688912,	48688325	48688508	48688486	48688486	Frame_Shift_Del	C	-	p.G2070fs
LIHC	TCGA-DD-A39Y-01	IP6K2	ENST00000432678.2	chr3	48731607:48731673:48731891:48731958:48732522:48732851,	48731892	48731958	48731924	48731924	Frame_Shift_Del	A	-	p.F79fs
LIHC	TCGA-DD-A39Y-01	P4HTM	ENST00000343546.4	chr3	49042293:49042603:49043150:49043300:49043496:49043620,	49043151	49043300	49043156	49043156	Frame_Shift_Del	C	-	p.S401fs
LIHC	TCGA-DD-A39Y-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49051048	49051048	Frame_Shift_Del	T	-	p.I724fs
LIHC	TCGA-DD-A39Y-01	WDR6	ENST00000415265.2	chr3	49044835:49044964:49050723:49051549:49051642:49051726,	49050724	49051549	49051048	49051048	Frame_Shift_Del	T	-	p.I724fs
LIHC	TCGA-DD-A39Y-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49051048	49051048	Frame_Shift_Del	T	-	p.I724fs
LIHC	TCGA-DD-A39Y-01	DALRD3	ENST00000440857.1	chr3	49053009:49053140:49053251:49053519:49053590:49053773,	49053252	49053519	49053437	49053437	Frame_Shift_Del	G	-	p.P304fs
LIHC	TCGA-DD-A39Y-01	DALRD3	ENST00000313778.5,ENST00000484831.1,ENST00000341949.4,ENST00000395462.4,ENST00000438585.1	chr3	49053251:49053305:49053405:49053519:49053590:49053773,	49053406	49053519	49053437	49053437	Frame_Shift_Del	G	-	p.P304fs
LIHC	TCGA-DD-A39Y-01	DALRD3	ENST00000441576.2	chr3	49053251:49053305:49053405:49053493:49053590:49053773,	49053406	49053493	49053437	49053437	Frame_Shift_Del	G	-	p.P304fs
LIHC	TCGA-DD-A39Y-01	QARS	ENST00000453392.1,ENST00000497635.1	chr3	49133426:49133512:49135624:49135691:49135785:49135913,	49135625	49135691	49135641	49135641	Frame_Shift_Del	A	-	p.L712fs
LIHC	TCGA-DD-A39Y-01	QARS	ENST00000470113.1,ENST00000459870.1	chr3	49133426:49133512:49135424:49135913:49136032:49136125,	49135425	49135913	49135641	49135641	Frame_Shift_Del	A	-	p.L712fs
LIHC	TCGA-DD-A39Y-01	USP19	ENST00000398892.3,ENST00000398896.1,ENST00000398898.2,ENST00000417901.1,ENST00000306026.5	chr3	49153156:49153371:49153479:49153595:49153712:49153784,49153156:49153377:49153479:49153595:49153712:49153784,	49153480	49153595	49153581	49153581	Frame_Shift_Del	G	-	p.P447fs
LIHC	TCGA-DD-A39Y-01	CCDC36	ENST00000452691.2,ENST00000296449.5,ENST00000366429.2,ENST00000438782.1	chr3	49249198:49249269:49273980:49274155:49278658:49278822,	49273981	49274155	49274073	49274073	Frame_Shift_Del	A	-	p.E50fs
LIHC	TCGA-DD-A39Y-01	C3orf62	ENST00000436325.1	chr3	49311481:49311573:49313859:49314274:49314618:49314652,	49313860	49314274	49313866	49313866	Frame_Shift_Del	T	-	p.N147fs
LIHC	TCGA-DD-A39Y-01	C3orf62	ENST00000436325.1	chr3	49311481:49311573:49313859:49314274:49314618:49314652,	49313860	49314274	49313926	49313926	Frame_Shift_Del	A	-	p.L127fs
LIHC	TCGA-DD-A39Y-01	RHOA	ENST00000418115.1,ENST00000445425.1,ENST00000422781.1	chr3	49399949:49400059:49405860:49405981:49412866:49413024,	49405861	49405981	49405952	49405952	Frame_Shift_Del	C	-	p.G62fs
LIHC	TCGA-DD-A39Y-01	AMT	ENST00000458307.2,ENST00000546031.1,ENST00000476127.1,ENST00000473163.1,ENST00000273588.3,ENST00000538581.1,ENST00000395338.2,ENST00000476226.1,ENST00000399379.2,ENST00000427987.1	chr3	49455113:49455151:49455250:49455406:49456403:49456584,	49455251	49455406	49455297	49455297	Frame_Shift_Del	G	-	p.P329fs
LIHC	TCGA-DD-A39Y-01	APEH	ENST00000296456.5,ENST00000457042.1,ENST00000462439.1,ENST00000463616.1,ENST00000438011.1	chr3	49711921:49712054:49712615:49712742:49713126:49713220,	49712616	49712742	49712736	49712736	Frame_Shift_Del	G	-	p.R89fs
LIHC	TCGA-DD-A39Y-01	APEH	ENST00000296456.5,ENST00000449966.1,ENST00000442186.1,ENST00000438011.1	chr3	49713323:49713399:49713810:49713948:49714041:49714133,49713550:49713652:49713810:49713948:49714041:49714133,	49713811	49713948	49713839	49713839	Frame_Shift_Del	G	-	p.W212fs
LIHC	TCGA-DD-A39Y-01	APEH	ENST00000463995.1	chr3	49713323:49713399:49713488:49713948:49714041:49714133,	49713489	49713948	49713839	49713839	Frame_Shift_Del	G	-	p.W212fs
LIHC	TCGA-DD-A39Y-01	APEH	ENST00000296456.5,ENST00000449966.1,ENST00000442186.1,ENST00000438011.1	chr3	49713323:49713399:49713810:49713948:49714041:49714133,49713550:49713652:49713810:49713948:49714041:49714133,	49713811	49713948	49713918	49713918	Frame_Shift_Del	G	-	p.E238fs
LIHC	TCGA-DD-A39Y-01	APEH	ENST00000463995.1	chr3	49713323:49713399:49713488:49713948:49714041:49714133,	49713489	49713948	49713918	49713918	Frame_Shift_Del	G	-	p.E238fs
LIHC	TCGA-DD-A39Y-01	IP6K1	ENST00000468463.1	chr3	49775704:49775855:49785250:49785601:49823786:49823960,	49785251	49785601	49785419	49785419	Frame_Shift_Del	C	-	p.A19fs
LIHC	TCGA-DD-A39Y-01	CDHR4	ENST00000487666.1,ENST00000412678.2	chr3	49829335:49829392:49829900:49830043:49830286:49830364,	49829901	49830043	49829924	49829924	Frame_Shift_Del	C	-	p.W705fs
LIHC	TCGA-DD-A39Y-01	CDHR4	ENST00000487666.1,ENST00000412678.2	chr3	49829335:49829392:49829900:49830043:49830286:49830364,	49829901	49830043	49829932	49829932	Frame_Shift_Del	G	-	p.L703fs
LIHC	TCGA-DD-A39Y-01	UBA7	ENST00000333486.3,ENST00000488536.1	chr3	49845818:49845901:49846408:49846592:49846822:49846897,	49846409	49846592	49846469	49846469	Frame_Shift_Del	G	-	p.Q764fs
LIHC	TCGA-DD-A39Y-01	MST1R	ENST00000411578.2,ENST00000468525.1,ENST00000296474.3,ENST00000344206.4	chr3	49934712:49934849:49934952:49935118:49935483:49935644,	49934953	49935118	49935057	49935057	Frame_Shift_Del	G	-	p.Q648fs
LIHC	TCGA-DD-A39Y-01	MON1A	ENST00000417270.1,ENST00000455683.2,ENST00000296473.3	chr3	49946305:49946587:49946685:49946833:49947551:49948317,	49946686	49946833	49946707	49946707	Frame_Shift_Del	G	-	p.P510fs
LIHC	TCGA-DD-A39Y-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50006149	50006149	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-DD-A39Y-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50006149	50006149	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-DD-A39Y-01	RBM6	ENST00000442092.1,ENST00000539992.1,ENST00000419610.1,ENST00000443081.1,ENST00000422955.1,ENST00000454079.1,ENST00000266022.4	chr3	50106122:50106197:50107887:50107985:50112633:50112763,	50107888	50107985	50107922	50107922	Frame_Shift_Del	A	-	p.E886fs
LIHC	TCGA-DD-A39Y-01	HYAL1	ENST00000457214.2	chr3	50338418:50338508:50339487:50340054:50340896:50341004,	50339488	50340054	50339997	50339997	Frame_Shift_Del	C	-	p.E131fs
LIHC	TCGA-DD-A39Y-01	HYAL1	ENST00000395143.2	chr3	50337912:50338231:50339487:50340411:50340896:50341004,	50339488	50340411	50339997	50339997	Frame_Shift_Del	C	-	p.E131fs
LIHC	TCGA-DD-A39Y-01	ZMYND10	ENST00000442887.1,ENST00000360165.3,ENST00000231749.3	chr3	50380548:50380637:50380737:50380875:50380993:50381047,	50380738	50380875	50380838	50380838	Frame_Shift_Del	A	-	p.L137fs
LIHC	TCGA-DD-A39Y-01	MAPKAPK3	ENST00000357955.2,ENST00000446044.1,ENST00000430409.1	chr3	50655140:50655215:50677796:50677936:50679137:50679202,	50677797	50677936	50677919	50677919	Frame_Shift_Del	C	-	p.L115fs
LIHC	TCGA-DD-A39Y-01	MAPKAPK3	ENST00000357955.2,ENST00000446044.1,ENST00000430409.1	chr3	50679686:50679763:50681839:50681963:50683140:50683216,	50681840	50681963	50681896	50681896	Frame_Shift_Del	T	-	p.D187fs
LIHC	TCGA-DD-A39Y-01	TEX264	ENST00000457927.1,ENST00000415259.1,ENST00000412249.1	chr3	51705311:51705347:51708286:51708578:51718428:51718483,51705289:51705563:51708286:51708578:51718428:51718483,51705260:51705304:51708286:51708578:51718428:51718477,51705910:51706099:51708286:51708578:51718428:51718483,51706356:51706408:51708286:51708578:51718428:51718483,51706243:51706317:51708286:51708578:51718428:51718483,	51708287	51708578	51708508	51708508	Frame_Shift_Del	T	-	p.L63fs
LIHC	TCGA-DD-A39Y-01	GLYCTK	ENST00000436784.2,ENST00000473032.1,ENST00000354773.4,ENST00000486393.1,ENST00000305690.8	chr3	52321871:52321892:52324319:52324735:52324975:52325127,	52324320	52324735	52324594	52324594	Frame_Shift_Del	A	-	p.Q79fs
LIHC	TCGA-DD-A39Y-01	GLYCTK	ENST00000489173.1	chr3	52325762:52325938:52326275:52327190:52327322:52327485,	52326276	52327190	52326906	52326906	Frame_Shift_Del	T	-	p.F446fs
LIHC	TCGA-DD-A39Y-01	GLYCTK	ENST00000489173.1	chr3	52325762:52325938:52326275:52327190:52327322:52327485,	52326276	52327190	52327044	52327044	Frame_Shift_Del	T	-	p.F493fs
LIHC	TCGA-DD-A39Y-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52360155:52360330:52360750:52360907:52361897:52362030,	52360751	52360907	52360850	52360850	Frame_Shift_Del	C	-	p.H227fs
LIHC	TCGA-DD-A39Y-01	DNAH1	ENST00000490713.1,ENST00000480649.1,ENST00000486752.1,ENST00000420323.2,ENST00000488988.1	chr3	52425194:52425344:52425458:52425619:52426479:52426572,	52425459	52425619	52425494	52425494	Frame_Shift_Del	G	-	p.L3309fs
LIHC	TCGA-DD-A39Y-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000488988.1	chr3	52431722:52431893:52432047:52432178:52432865:52433152,	52432048	52432178	52432067	52432067	Frame_Shift_Del	A	-	p.Q3993fs
LIHC	TCGA-DD-A39Y-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439271	52439271	Frame_Shift_Del	G	-	p.P324fs
LIHC	TCGA-DD-A39Y-01	SEMA3G	ENST00000231721.2	chr3	52473882:52474114:52474392:52474537:52474769:52474839,	52474393	52474537	52474411	52474411	Frame_Shift_Del	G	-	p.P375fs
LIHC	TCGA-DD-A39Y-01	SEMA3G	ENST00000231721.2	chr3	52473882:52474114:52474392:52474537:52474769:52474839,	52474393	52474537	52474421	52474421	Frame_Shift_Del	C	-	p.G372fs
LIHC	TCGA-DD-A39Y-01	STAB1	ENST00000321725.6	chr3	52549438:52549522:52550058:52550254:52550371:52550467,	52550059	52550254	52550119	52550119	Frame_Shift_Del	G	-	p.G1338fs
LIHC	TCGA-DD-A39Y-01	NT5DC2	ENST00000478091.1	chr3	52561309:52561391:52561632:52561947:52562028:52562089,	52561633	52561947	52561679	52561679	Frame_Shift_Del	C	-	p.V294fs
LIHC	TCGA-DD-A39Y-01	NT5DC2	ENST00000307092.4,ENST00000489316.1,ENST00000307076.4,ENST00000422318.2,ENST00000492555.1,ENST00000459839.1	chr3	52561309:52561391:52561632:52561734:52561844:52561947,	52561633	52561734	52561679	52561679	Frame_Shift_Del	C	-	p.V294fs
LIHC	TCGA-DD-A39Y-01	NT5DC2	ENST00000307092.4,ENST00000307076.4,ENST00000422318.2,ENST00000486792.1,ENST00000459839.1	chr3	52562207:52562327:52562461:52562555:52562652:52562708,	52562462	52562555	52562508	52562508	Frame_Shift_Del	C	-	p.G162fs
LIHC	TCGA-DD-A39Y-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588886	52588886	Frame_Shift_Del	C	-	p.G1402fs
LIHC	TCGA-DD-A39Y-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597340	52597340	Frame_Shift_Del	G	-	p.L1317fs
LIHC	TCGA-DD-A39Y-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52643328:52643971:52649366:52649472:52651277:52651554,	52649367	52649472	52649380	52649380	Frame_Shift_Del	G	-	p.P605fs
LIHC	TCGA-DD-A39Y-01	ITIH1	ENST00000540715.1,ENST00000542827.1,ENST00000273283.2	chr3	52812962:52813062:52813447:52813610:52814284:52814385,	52813448	52813610	52813454	52813454	Frame_Shift_Del	G	-	p.S139fs
LIHC	TCGA-DD-A39Y-01	ITIH1	ENST00000480409.1	chr3	52812962:52813062:52813447:52813893:52814284:52814385,	52813448	52813893	52813454	52813454	Frame_Shift_Del	G	-	p.S139fs
LIHC	TCGA-DD-A39Y-01	ITIH1	ENST00000428133.1,ENST00000540715.1,ENST00000542827.1,ENST00000273283.2,ENST00000537050.1	chr3	52818427:52818493:52819059:52819245:52820310:52820450,	52819060	52819245	52819084	52819084	Frame_Shift_Del	C	-	p.P478fs
LIHC	TCGA-DD-A39Y-01	ITIH3	ENST00000416872.2,ENST00000449956.2	chr3	52834980:52835162:52836349:52836535:52836682:52836712,	52836350	52836535	52836429	52836429	Frame_Shift_Del	C	-	p.T488fs
LIHC	TCGA-DD-A39Y-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53757460:53757686:53757818:53758026:53760905:53761026,	53757819	53758026	53758010	53758010	Frame_Shift_Del	T	-	p.L716fs
LIHC	TCGA-DD-A39Y-01	IL17RB	ENST00000475124.1	chr3	53890870:53891013:53891642:53892845:53894156:53894255,	53891643	53892845	53891691	53891691	Frame_Shift_Del	G	-	p.G241fs
LIHC	TCGA-DD-A39Y-01	ACTR8	ENST00000335754.3,ENST00000482349.1	chr3	53907058:53907154:53908237:53908391:53909974:53910107,	53908238	53908391	53908325	53908325	Frame_Shift_Del	C	-	p.G326fs
LIHC	TCGA-DD-A39Y-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000492460.1,ENST00000471363.1,ENST00000490478.1	chr3	54420741:54420801:54537518:54537681:54596826:54596942,	54537519	54537681	54537569	54537569	Frame_Shift_Del	T	-	p.N144fs
LIHC	TCGA-DD-A39Y-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1	chr3	56597711:56598153:56600621:56600787:56600977:56601081,	56600622	56600787	56600724	56600724	Frame_Shift_Del	A	-	p.E216fs
LIHC	TCGA-DD-A39Y-01	CCDC66	ENST00000434467.1,ENST00000341455.6	chr3	56597711:56598153:56600621:56600768:56600977:56601081,	56600622	56600768	56600724	56600724	Frame_Shift_Del	A	-	p.E216fs
LIHC	TCGA-DD-A39Y-01	CCDC66	ENST00000494672.1,ENST00000482673.1,ENST00000471681.1	chr3	56600978:56601081:56605208:56605330:56626997:56627089,56600978:56601081:56605208:56605330:56606364:56606456,	56605209	56605330	56605302	56605302	Frame_Shift_Del	A	-	p.E303fs
LIHC	TCGA-DD-A39Y-01	FAM208A	ENST00000431842.2,ENST00000355628.5,ENST00000493960.2	chr3	56661676:56661769:56662519:56662642:56667071:56667871,	56662520	56662642	56662568	56662568	Frame_Shift_Del	T	-	p.K837fs
LIHC	TCGA-DD-A39Y-01	FAM208A	ENST00000431842.2,ENST00000355628.5,ENST00000493960.2	chr3	56694996:56695045:56696412:56696518:56697568:56697600,	56696413	56696518	56696425	56696425	Frame_Shift_Del	A	-	p.L383fs
LIHC	TCGA-DD-A39Y-01	FAM208A	ENST00000355628.5,ENST00000493960.2	chr3	56703727:56703819:56704100:56704173:56705627:56705720,	56704101	56704173	56704153	56704153	Frame_Shift_Del	T	-	p.K197fs
LIHC	TCGA-DD-A39Y-01	APPL1	ENST00000482800.1,ENST00000288266.3	chr3	57286296:57286339:57287709:57287766:57290984:57291079,	57287710	57287766	57287741	57287741	Frame_Shift_Del	A	-	p.Q376fs
LIHC	TCGA-DD-A39Y-01	DNAH12	ENST00000495027.1,ENST00000351747.2	chr3	57440501:57440621:57443447:57443730:57443825:57443947,	57443448	57443730	57443646	57443646	Frame_Shift_Del	T	-	p.K1023fs
LIHC	TCGA-DD-A39Y-01	DENND6A	ENST00000311128.5	chr3	57616651:57616705:57618991:57619081:57620284:57620349,	57618992	57619081	57619023	57619023	Frame_Shift_Del	A	-	p.L441fs
LIHC	TCGA-DD-A39Y-01	DENND6A	ENST00000311128.5	chr3	57649362:57649443:57651849:57651962:57657982:57658025,	57651850	57651962	57651939	57651939	Frame_Shift_Del	A	-	p.C115fs
LIHC	TCGA-DD-A39Y-01	SLMAP	ENST00000417128.1,ENST00000295952.3,ENST00000428312.1,ENST00000442599.2,ENST00000449503.2,ENST00000494088.1,ENST00000416658.1,ENST00000295951.3,ENST00000495364.1	chr3	57898884:57899002:57902632:57902804:57908615:57908750,	57902633	57902804	57902753	57902753	Frame_Shift_Del	A	-	p.L719fs
LIHC	TCGA-DD-A39Y-01	RPP14	ENST00000295959.5	chr3	58292246:58292378:58296035:58296133:58296233:58296318,58292040:58292144:58296035:58296133:58296233:58296318,	58296036	58296133	58296064	58296064	Frame_Shift_Del	C	-	p.A3fs
LIHC	TCGA-DD-A39Y-01	RPP14	ENST00000466547.1	chr3	58292040:58292144:58296016:58296133:58296233:58296318,	58296017	58296133	58296064	58296064	Frame_Shift_Del	C	-	p.A3fs
LIHC	TCGA-DD-A39Y-01	PDHB	ENST00000383714.4,ENST00000469364.1,ENST00000480626.1,ENST00000461692.1,ENST00000302746.6,ENST00000474765.1	chr3	58415936:58415965:58416383:58416669:58417319:58417355,	58416384	58416669	58416538	58416538	Frame_Shift_Del	T	-	p.R145fs
LIHC	TCGA-DD-A39Y-01	FAM3D	ENST00000358781.2	chr3	58622020:58622147:58622867:58622952:58625853:58625904,	58622868	58622952	58622910	58622910	Frame_Shift_Del	C	-	p.G139fs
LIHC	TCGA-DD-A39Y-01	C3orf67	ENST00000482387.1,ENST00000484535.1,ENST00000295966.7	chr3	58739495:58739590:58792120:58792182:58817411:58817451,	58792121	58792182	58792142	58792142	Frame_Shift_Del	G	-	p.P489fs
LIHC	TCGA-DD-A39Y-01	CADPS	ENST00000283269.9	chr3	62484836:62484943:62499312:62499381:62501733:62501857,	62499313	62499381	62499321	62499321	Frame_Shift_Del	A	-	p.L881fs
LIHC	TCGA-DD-A39Y-01	SYNPR	ENST00000479198.1,ENST00000478300.1,ENST00000295894.5,ENST00000460711.1,ENST00000493532.1	chr3	63466507:63466632:63542218:63542417:63594800:63594992,	63542219	63542417	63542385	63542385	Frame_Shift_Del	A	-	p.K126fs
LIHC	TCGA-DD-A39Y-01	THOC7	ENST00000469584.1	chr3	63823667:63823738:63824047:63824175:63849447:63849475,	63824048	63824175	63824060	63824060	Frame_Shift_Del	A	-	p.Y85fs
LIHC	TCGA-DD-A39Y-01	THOC7	ENST00000469584.1	chr3	63823667:63823738:63824047:63824175:63849447:63849475,	63824048	63824175	63824063	63824063	Frame_Shift_Del	T	-	p.I84fs
LIHC	TCGA-DD-A39Y-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1	chr3	64592635:64592755:64599020:64599185:64600996:64601161,	64599021	64599185	64599030	64599030	Frame_Shift_Del	G	-	p.P1115fs
LIHC	TCGA-DD-A39Y-01	ADAMTS9	ENST00000295903.4,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64600996:64601161:64601635:64601846:64606789:64606916,	64601636	64601846	64601768	64601768	Frame_Shift_Del	T	-	p.K964fs
LIHC	TCGA-DD-A39Y-01	LRIG1	ENST00000383703.3,ENST00000273261.3,ENST00000496559.2,ENST00000495037.1	chr3	66436404:66436725:66444463:66444627:66448535:66448607,	66444464	66444627	66444574	66444574	Frame_Shift_Del	G	-	p.P477fs
LIHC	TCGA-DD-A39Y-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69072295:69072471:69073205:69073331:69074710:69074863,	69073206	69073331	69073307	69073307	Frame_Shift_Del	T	-	p.T1016fs
LIHC	TCGA-DD-A39Y-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69074710:69074863:69075146:69075248:69077050:69077143,	69075147	69075248	69075191	69075191	Frame_Shift_Del	T	-	p.S942fs
LIHC	TCGA-DD-A39Y-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69087993:69088160:69088701:69088844:69091957:69092063,	69088702	69088844	69088741	69088741	Frame_Shift_Del	T	-	p.K599fs
LIHC	TCGA-DD-A39Y-01	UBA3	ENST00000465627.1,ENST00000540295.1,ENST00000349511.4,ENST00000415609.2,ENST00000461934.1,ENST00000361055.4	chr3	69105150:69105214:69105333:69105434:69105762:69105844,	69105334	69105434	69105361	69105361	Frame_Shift_Del	A	-	p.L386fs
LIHC	TCGA-DD-A39Y-01	UBA3	ENST00000465627.1,ENST00000540295.1,ENST00000349511.4,ENST00000415609.2,ENST00000461934.1,ENST00000361055.4	chr3	69105762:69105844:69105929:69105966:69106406:69106460,	69105930	69105966	69105940	69105940	Frame_Shift_Del	T	-	p.I331fs
LIHC	TCGA-DD-A39Y-01	MITF	ENST00000472437.1,ENST00000394355.2,ENST00000328528.6,ENST00000352241.4,ENST00000448226.2,ENST00000314557.6,ENST00000314589.5,ENST00000394351.3,ENST00000461014.1,ENST00000451708.1	chr3	69987107:69987200:69988248:69988332:69990386:69990482,	69988249	69988332	69988252	69988252	Frame_Shift_Del	T	-	p.F196fs
LIHC	TCGA-DD-A39Y-01	MITF	ENST00000478490.1	chr3	69987107:69987200:69988248:69988297:69990386:69990482,	69988249	69988297	69988252	69988252	Frame_Shift_Del	T	-	p.F196fs
LIHC	TCGA-DD-A39Y-01	SHQ1	ENST00000325599.8,ENST00000444040.2,ENST00000463369.1,ENST00000482785.1	chr3	72890195:72890350:72891430:72891553:72893509:72893574,	72891431	72891553	72891507	72891507	Frame_Shift_Del	A	-	p.F85fs
LIHC	TCGA-DD-A39Y-01	GXYLT2	ENST00000491839.1,ENST00000389617.4	chr3	73004365:73004500:73006379:73006503:73016697:73016870,	73006380	73006503	73006424	73006424	Frame_Shift_Del	C	-	p.Y299fs
LIHC	TCGA-DD-A39Y-01	CNTN3	ENST00000263665.6	chr3	74414716:74414853:74418339:74418524:74419039:74419142,	74418340	74418524	74418369	74418369	Frame_Shift_Del	T	-	p.N306fs
LIHC	TCGA-DD-A39Y-01	ROBO1	ENST00000467549.1,ENST00000495273.1	chr3	78795892:78796050:78987750:78988077:79067556:79067694,	78987751	78988077	78988052	78988052	Frame_Shift_Del	A	-	p.F27fs
LIHC	TCGA-DD-A39Y-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93593087:93593249:93595809:93596035:93598006:93598158,	93595810	93596035	93595838	93595838	Frame_Shift_Del	T	-	p.K614fs
LIHC	TCGA-DD-A39Y-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93593087:93593249:93595809:93596035:93598006:93598158,	93595810	93596035	93595853	93595853	Frame_Shift_Del	T	-	p.K609fs
LIHC	TCGA-DD-A39Y-01	EPHA6	ENST00000389672.5,ENST00000502694.1,ENST00000514100.1,ENST00000508345.1,ENST00000442602.2	chr3	97251201:97251387:97311455:97311581:97329636:97329668,	97311456	97311581	97311563	97311563	Frame_Shift_Del	C	-	p.P833fs
LIHC	TCGA-DD-A39Y-01	ST3GAL6	ENST00000495376.1	chr3	98491656:98491760:98492763:98492827:98503788:98503820,98491656:98491760:98492763:98492827:98501701:98501761,98491656:98491760:98492763:98492827:98502406:98502583,	98492764	98492827	98492771	98492771	Frame_Shift_Del	T	-	p.Y7fs
LIHC	TCGA-DD-A39Y-01	ST3GAL6	ENST00000485145.1,ENST00000497621.1,ENST00000469105.1,ENST00000492254.1,ENST00000486334.2,ENST00000477574.1,ENST00000483910.1,ENST00000394162.1	chr3	98492763:98492827:98503788:98503884:98506879:98506916,	98503789	98503884	98503799	98503799	Frame_Shift_Del	A	-	p.K117fs
LIHC	TCGA-DD-A39Y-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000469648.1	chr3	98541512:98541585:98544158:98544210:98568304:98568442,	98544159	98544210	98544174	98544174	Frame_Shift_Del	A	-	p.L203fs
LIHC	TCGA-DD-A39Y-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000486004.1	chr3	98544177:98544210:98568304:98568442:98600383:98600611,	98568305	98568442	98568393	98568393	Frame_Shift_Del	T	-	p.K161fs
LIHC	TCGA-DD-A39Y-01	TBC1D23	ENST00000471098.1,ENST00000344949.5,ENST00000486274.1,ENST00000394144.4,ENST00000485687.1	chr3	100000585:100000691:100002450:100002655:100009421:100009489,	100002451	100002655	100002576	100002576	Frame_Shift_Del	A	-	p.K133fs
LIHC	TCGA-DD-A39Y-01	NIT2	ENST00000465368.1	chr3	100059916:100060005:100064428:100065099:100067646:100067725,	100064429	100065099	100064458	100064458	Frame_Shift_Del	A	-	p.G122fs
LIHC	TCGA-DD-A39Y-01	NIT2	ENST00000480073.1,ENST00000497785.1,ENST00000394140.4	chr3	100059916:100060005:100064428:100064522:100065024:100065099,	100064429	100064522	100064458	100064458	Frame_Shift_Del	A	-	p.G122fs
LIHC	TCGA-DD-A39Y-01	LNP1	ENST00000489752.1	chr3	100148540:100148729:100170523:100170793:100174620:100175032,	100170524	100170793	100170541	100170541	Frame_Shift_Del	T	-	p.N58fs
LIHC	TCGA-DD-A39Y-01	TFG	ENST00000490574.1	chr3	100428449:100428565:100432486:100432713:100438818:100438902,100428221:100428275:100432486:100432713:100438818:100438902,	100432487	100432713	100432598	100432598	Frame_Shift_Del	A	-	p.R23fs
LIHC	TCGA-DD-A39Y-01	TFG	ENST00000490574.1	chr3	100428449:100428565:100432486:100432713:100438818:100438902,100428221:100428275:100432486:100432713:100438818:100438902,	100432487	100432713	100432635	100432635	Frame_Shift_Del	T	-	p.L36fs
LIHC	TCGA-DD-A39Y-01	ABI3BP	ENST00000383691.4,ENST00000470336.1,ENST00000495591.1,ENST00000284322.5,ENST00000487012.1,ENST00000471714.1	chr3	100473455:100473535:100484684:100484793:100489586:100489796,	100484685	100484793	100484696	100484696	Frame_Shift_Del	T	-	p.K1604fs
LIHC	TCGA-DD-A39Y-01	ABI3BP	ENST00000383691.4,ENST00000470336.1,ENST00000495591.1,ENST00000284322.5,ENST00000487012.1,ENST00000471714.1,ENST00000486770.1	chr3	100489730:100489796:100493448:100493517:100494050:100494179,	100493449	100493517	100493465	100493465	Frame_Shift_Del	C	-	p.G1496fs
LIHC	TCGA-DD-A39Y-01	ABI3BP	ENST00000495063.1,ENST00000284322.5,ENST00000533855.1,ENST00000471714.1	chr3	100567644:100567719:100568888:100568963:100569503:100569578,	100568889	100568963	100568932	100568932	Frame_Shift_Del	T	-	p.K493fs
LIHC	TCGA-DD-A39Y-01	ABI3BP	ENST00000284322.5,ENST00000533855.1	chr3	100570718:100570784:100581154:100581229:100583676:100583751,	100581155	100581229	100581191	100581191	Frame_Shift_Del	T	-	p.I424fs
LIHC	TCGA-DD-A39Y-01	ABI3BP	ENST00000284322.5,ENST00000533855.1	chr3	100570718:100570784:100581154:100581229:100583676:100583751,	100581155	100581229	100581217	100581217	Frame_Shift_Del	T	-	p.K415fs
LIHC	TCGA-DD-A39Y-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101060489:101060623:101062529:101062798:101066715:101066757,	101062530	101062798	101062542	101062542	Frame_Shift_Del	T	-	p.K698fs
LIHC	TCGA-DD-A39Y-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101060489:101060623:101062529:101062798:101066715:101066757,	101062530	101062798	101062553	101062553	Frame_Shift_Del	T	-	p.M695fs
LIHC	TCGA-DD-A39Y-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101504245:101504533:101520078:101520833:101525896:101525970,	101520079	101520833	101520264	101520264	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-DD-A39Y-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101504245:101504533:101520078:101520833:101525896:101525970,	101520079	101520833	101520697	101520697	Frame_Shift_Del	T	-	p.F238fs
LIHC	TCGA-DD-A39Y-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101525896:101525970:101535638:101535845:101540247:101541667,	101535639	101535845	101535698	101535698	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-DD-A39Y-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105412337:105412432:105420937:105421303:105422831:105423017,	105420938	105421303	105421097	105421097	Frame_Shift_Del	C	-	p.G600fs
LIHC	TCGA-DD-A39Y-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105464760:105464882:105470305:105470462:105495239:105495386,	105470306	105470462	105470321	105470321	Frame_Shift_Del	A	-	p.F236fs
LIHC	TCGA-DD-A39Y-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105470305:105470462:105495239:105495386:105572257:105572508,	105495240	105495386	105495248	105495248	Frame_Shift_Del	A	-	p.F186fs
LIHC	TCGA-DD-A39Y-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491638	107491638	Frame_Shift_Del	A	-	p.E357fs
LIHC	TCGA-DD-A39Y-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491988	107491988	Frame_Shift_Del	A	-	p.K475fs
LIHC	TCGA-DD-A39Y-01	IFT57	ENST00000264538.3,ENST00000478157.1	chr3	107886639:107886711:107910367:107910490:107925474:107925543,	107910368	107910490	107910476	107910476	Frame_Shift_Del	A	-	p.T223fs
LIHC	TCGA-DD-A39Y-01	MYH15	ENST00000273353.3	chr3	108205269:108205373:108211346:108211442:108211960:108212024,	108211347	108211442	108211357	108211357	Frame_Shift_Del	T	-	p.K307fs
LIHC	TCGA-DD-A39Y-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363133	108363133	Frame_Shift_Del	A	-	p.K423fs
LIHC	TCGA-DD-A39Y-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363201	108363201	Frame_Shift_Del	T	-	p.P444fs
LIHC	TCGA-DD-A39Y-01	TRAT1	ENST00000493604.1,ENST00000478830.1	chr3	108541618:108541781:108549516:108549627:108557780:108557814,	108549517	108549627	108549534	108549534	Frame_Shift_Del	T	-	p.F10fs
LIHC	TCGA-DD-A39Y-01	DPPA4	ENST00000335658.6	chr3	109046371:109046871:109047736:109047935:109049370:109049659,	109047737	109047935	109047779	109047779	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-DD-A39Y-01	DPPA4	ENST00000463966.1	chr3	109046371:109046871:109047736:109047928:109050580:109050631,	109047737	109047928	109047779	109047779	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-DD-A39Y-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603917	111603917	Frame_Shift_Del	C	-	p.V331fs
LIHC	TCGA-DD-A39Y-01	TAGLN3	ENST00000486460.1,ENST00000393917.2,ENST00000273368.4,ENST00000478951.1,ENST00000455401.2	chr3	111719618:111719793:111730609:111730712:111732256:111732370,	111730610	111730712	111730647	111730647	Frame_Shift_Del	T	-	p.A131fs
LIHC	TCGA-DD-A39Y-01	BOC	ENST00000479182.1,ENST00000355385.3,ENST00000495514.1,ENST00000466059.1,ENST00000273395.4	chr3	112991256:112991550:112991915:112992188:112993221:112993529,	112991916	112992188	112991956	112991956	Frame_Shift_Del	C	-	p.I334fs
LIHC	TCGA-DD-A39Y-01	BOC	ENST00000479182.1,ENST00000355385.3,ENST00000495514.1,ENST00000466059.1,ENST00000273395.4	chr3	112991256:112991550:112991915:112992188:112993221:112993529,	112991916	112992188	112992097	112992097	Frame_Shift_Del	G	-	p.M381fs
LIHC	TCGA-DD-A39Y-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114070316	114070316	Frame_Shift_Del	C	-	p.G130fs
LIHC	TCGA-DD-A39Y-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114070529	114070529	Frame_Shift_Del	T	-	p.K59fs
LIHC	TCGA-DD-A39Y-01	UPK1B	ENST00000497685.1,ENST00000460625.1,ENST00000264234.3	chr3	118913065:118913245:118917903:118917987:118922763:118922959,	118917904	118917987	118917961	118917961	Frame_Shift_Del	T	-	p.F236fs
LIHC	TCGA-DD-A39Y-01	TMEM39A	ENST00000319172.5,ENST00000438581.2	chr3	119148346:119151061:119153608:119153729:119155637:119155663,	119153609	119153729	119153653	119153653	Frame_Shift_Del	A	-	p.Y397fs
LIHC	TCGA-DD-A39Y-01	TIMMDC1	ENST00000463927.2	chr3	119217427:119217774:119219541:119219707:119222378:119222467,119217429:119217789:119219541:119219707:119236051:119236162,	119219542	119219707	119219635	119219635	Frame_Shift_Del	T	-	p.A96fs
LIHC	TCGA-DD-A39Y-01	MAATS1	ENST00000482573.1,ENST00000482927.1,ENST00000468630.1,ENST00000475093.1,ENST00000273390.5,ENST00000483134.1	chr3	119451232:119451323:119452210:119452353:119456212:119456329,	119452211	119452353	119452236	119452236	Frame_Shift_Del	C	-	p.L409fs
LIHC	TCGA-DD-A39Y-01	GSK3B	ENST00000264235.8,ENST00000316626.5	chr3	119545547:119545702:119562101:119562200:119582265:119582452,	119562102	119562200	119562124	119562124	Frame_Shift_Del	G	-	p.P391fs
LIHC	TCGA-DD-A39Y-01	GPR156	ENST00000315843.3,ENST00000461057.1,ENST00000464295.1	chr3	119892158:119892317:119899971:119900208:119904145:119904241,	119899972	119900208	119899974	119899974	Frame_Shift_Del	G	-	p.Q311fs
LIHC	TCGA-DD-A39Y-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097648	121097648	Frame_Shift_Del	A	-	p.V778fs
LIHC	TCGA-DD-A39Y-01	POLQ	ENST00000264233.5	chr3	121151764:121151880:121154968:121155122:121158838:121158963,	121154969	121155122	121154972	121154972	Frame_Shift_Del	T	-	p.T2514fs
LIHC	TCGA-DD-A39Y-01	POLQ	ENST00000264233.5	chr3	121187151:121187278:121190836:121191011:121192196:121192334,	121190837	121191011	121190886	121190886	Frame_Shift_Del	A	-	p.F2223fs
LIHC	TCGA-DD-A39Y-01	POLQ	ENST00000474243.1	chr3	121187151:121187278:121195386:121195580:121200418:121200443,	121195387	121195580	121195416	121195416	Frame_Shift_Del	A	-	p.S2126fs
LIHC	TCGA-DD-A39Y-01	POLQ	ENST00000264233.5	chr3	121200418:121200659:121202232:121202429:121203887:121204031,	121202233	121202429	121202381	121202381	Frame_Shift_Del	A	-	p.L1941fs
LIHC	TCGA-DD-A39Y-01	HCLS1	ENST00000314583.3,ENST00000473883.1,ENST00000428394.2	chr3	121350561:121350829:121350947:121351031:121351178:121351410,	121350948	121351031	121350950	121350950	Frame_Shift_Del	C	-	p.G441fs
LIHC	TCGA-DD-A39Y-01	HCLS1	ENST00000314583.3,ENST00000473883.1,ENST00000428394.2	chr3	121350947:121351031:121351178:121351410:121351913:121352018,	121351179	121351410	121351194	121351194	Frame_Shift_Del	A	-	p.S410fs
LIHC	TCGA-DD-A39Y-01	HCLS1	ENST00000314583.3,ENST00000473883.1,ENST00000428394.2	chr3	121350947:121351031:121351178:121351410:121351913:121352018,	121351179	121351410	121351233	121351233	Frame_Shift_Del	C	-	p.D396fs
LIHC	TCGA-DD-A39Y-01	IQCB1	ENST00000460108.1,ENST00000349820.6,ENST00000393650.3,ENST00000310864.6	chr3	121526190:121526290:121527762:121527856:121544897:121545027,	121527763	121527856	121527845	121527845	Frame_Shift_Del	T	-	p.K135fs
LIHC	TCGA-DD-A39Y-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573569	121573569	Frame_Shift_Del	A	-	p.S79fs
LIHC	TCGA-DD-A39Y-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573634	121573634	Frame_Shift_Del	A	-	p.E101fs
LIHC	TCGA-DD-A39Y-01	ILDR1	ENST00000344209.5,ENST00000460554.1,ENST00000273691.3,ENST00000462014.1	chr3	121720154:121720301:121720591:121720711:121724090:121724240,	121720592	121720711	121720637	121720637	Frame_Shift_Del	C	-	p.D152fs
LIHC	TCGA-DD-A39Y-01	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828193	121828193	Frame_Shift_Del	T	-	p.V262fs
LIHC	TCGA-DD-A39Y-01	KPNA1	ENST00000344337.6,ENST00000466923.1,ENST00000470904.1,ENST00000494339.1,ENST00000485027.1	chr3	122152507:122152635:122156016:122156142:122160884:122160963,	122156017	122156142	122156048	122156048	Frame_Shift_Del	T	-	p.N364fs
LIHC	TCGA-DD-A39Y-01	DTX3L	ENST00000383661.3	chr3	122283273:122283460:122284705:122284917:122289301:122289519,	122284706	122284917	122284754	122284754	Frame_Shift_Del	A	-	p.E79fs
LIHC	TCGA-DD-A39Y-01	DTX3L	ENST00000296161.4	chr3	122287335:122288871:122289301:122289519:122290524:122290594,	122289302	122289519	122289423	122289423	Frame_Shift_Del	T	-	p.I686fs
LIHC	TCGA-DD-A39Y-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345823	122345823	Frame_Shift_Del	A	-	p.K462fs
LIHC	TCGA-DD-A39Y-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122420438	122420438	Frame_Shift_Del	G	-	p.G1013fs
LIHC	TCGA-DD-A39Y-01	HSPBAP1	ENST00000306103.2,ENST00000465044.1,ENST00000467643.1	chr3	122487547:122487729:122496567:122496753:122512463:122512507,	122496568	122496753	122496734	122496734	Frame_Shift_Del	A	-	p.F28fs
LIHC	TCGA-DD-A39Y-01	MYLK	ENST00000464489.1,ENST00000508240.1,ENST00000354792.5,ENST00000360304.3,ENST00000346322.5,ENST00000359169.1,ENST00000475616.1,ENST00000360772.3	chr3	123375991:123376275:123382951:123383105:123385065:123385193,	123382952	123383105	123382987	123382987	Frame_Shift_Del	C	-	p.G1317fs
LIHC	TCGA-DD-A39Y-01	CCDC14	ENST00000409657.1,ENST00000488653.2,ENST00000409697.3	chr3	123667792:123667979:123674689:123674812:123679990:123680055,123667792:123667979:123674689:123674812:123674892:123674962,	123674690	123674812	123674756	123674756	Frame_Shift_Del	T	-	p.R144fs
LIHC	TCGA-DD-A39Y-01	CCDC14	ENST00000495381.1	chr3	123667792:123667979:123674689:123675642:123679990:123680055,	123674690	123675642	123674756	123674756	Frame_Shift_Del	T	-	p.R144fs
LIHC	TCGA-DD-A39Y-01	CCDC14	ENST00000438440.2	chr3	123667792:123667979:123674689:123674962:123675201:123675274,	123674690	123674962	123674756	123674756	Frame_Shift_Del	T	-	p.R144fs
LIHC	TCGA-DD-A39Y-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124457032	124457032	Frame_Shift_Del	T	-	p.F310fs
LIHC	TCGA-DD-A39Y-01	UMPS	ENST00000474588.1	chr3	124453939:124454093:124456761:124457086:124458870:124459046,	124456762	124457086	124457032	124457032	Frame_Shift_Del	T	-	p.F310fs
LIHC	TCGA-DD-A39Y-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124457032	124457032	Frame_Shift_Del	T	-	p.F310fs
LIHC	TCGA-DD-A39Y-01	UMPS	ENST00000462091.1,ENST00000460034.1,ENST00000536109.1,ENST00000487622.1,ENST00000232607.2,ENST00000474588.1,ENST00000467167.1,ENST00000538242.1	chr3	124456977:124457086:124458870:124459046:124460998:124461113,	124458871	124459046	124458908	124458908	Frame_Shift_Del	A	-	p.V340fs
LIHC	TCGA-DD-A39Y-01	ITGB5	ENST00000481591.1,ENST00000296181.4	chr3	124487859:124487960:124492536:124492759:124515234:124515437,	124492537	124492759	124492736	124492736	Frame_Shift_Del	C	-	p.E573fs
LIHC	TCGA-DD-A39Y-01	ITGB5	ENST00000481591.1	chr3	124492665:124492759:124515234:124515664:124527868:124528003,124492665:124492759:124515234:124515664:124536467:124536557,	124515235	124515664	124515559	124515559	Frame_Shift_Del	C	-	p.V457fs
LIHC	TCGA-DD-A39Y-01	MUC13	ENST00000478191.1,ENST00000490147.1,ENST00000311075.3	chr3	124641043:124641150:124642373:124642496:124646378:124646447,	124642374	124642496	124642405	124642405	Frame_Shift_Del	C	-	p.G201fs
LIHC	TCGA-DD-A39Y-01	SLC12A8	ENST00000393469.4,ENST00000314584.7,ENST00000473262.1,ENST00000423114.2,ENST00000469902.1	chr3	124839442:124839530:124854512:124854626:124906080:124906272,124839442:124839530:124854512:124854626:124896586:124896808,	124854513	124854626	124854548	124854548	Frame_Shift_Del	A	-	p.F263fs
LIHC	TCGA-DD-A39Y-01	ROPN1B	ENST00000251776.4,ENST00000513830.1,ENST00000514116.1,ENST00000510450.1,ENST00000508088.1	chr3	125690885:125691013:125694405:125694523:125695846:125695920,	125694406	125694523	125694409	125694409	Frame_Shift_Del	T	-	p.Y40fs
LIHC	TCGA-DD-A39Y-01	SLC41A3	ENST00000315891.6,ENST00000360370.4,ENST00000383598.2,ENST00000508835.1,ENST00000514677.1,ENST00000513723.1,ENST00000346785.5	chr3	125741664:125741775:125745177:125745322:125752449:125752521,	125745178	125745322	125745302	125745302	Frame_Shift_Del	C	-	p.G132fs
LIHC	TCGA-DD-A39Y-01	SLC41A3	ENST00000507008.1	chr3	125741664:125741775:125745235:125745322:125752449:125752521,	125745236	125745322	125745302	125745302	Frame_Shift_Del	C	-	p.G132fs
LIHC	TCGA-DD-A39Y-01	ALDH1L1	ENST00000393431.2	chr3	125844458:125844564:125849065:125849136:125854377:125854505,	125849066	125849136	125849122	125849122	Frame_Shift_Del	G	-	p.P546fs
LIHC	TCGA-DD-A39Y-01	ZXDC	ENST00000389709.3	chr3	126160607:126160789:126178495:126178580:126180377:126181063,	126178496	126178580	126178522	126178522	Frame_Shift_Del	T	-	p.K729fs
LIHC	TCGA-DD-A39Y-01	TPRA1	ENST00000489960.1,ENST00000355552.3,ENST00000450633.2	chr3	127294027:127294108:127294591:127294652:127294782:127294893,127294245:127294348:127294591:127294652:127294782:127294893,	127294592	127294652	127294618	127294618	Frame_Shift_Del	G	-	p.P215fs
LIHC	TCGA-DD-A39Y-01	TPRA1	ENST00000489960.1,ENST00000355552.3,ENST00000450633.2,ENST00000483868.1	chr3	127294027:127294108:127294782:127294893:127295459:127295539,127294245:127294348:127294782:127294893:127295459:127295539,127294591:127294652:127294782:127294893:127295459:127295539,	127294783	127294893	127294891	127294891	Frame_Shift_Del	C	-	p.G167fs
LIHC	TCGA-DD-A39Y-01	MCM2	ENST00000265056.7,ENST00000491422.1,ENST00000474964.1	chr3	127336121:127336248:127336811:127336924:127337869:127338121,	127336812	127336924	127336880	127336880	Frame_Shift_Del	T	-	p.F657fs
LIHC	TCGA-DD-A39Y-01	MGLL	ENST00000479967.1,ENST00000453507.2,ENST00000434178.2,ENST00000265052.5,ENST00000398104.1	chr3	127441392:127441409:127500631:127500738:127540536:127540681,	127500632	127500738	127500726	127500726	Frame_Shift_Del	A	-	p.F46fs
LIHC	TCGA-DD-A39Y-01	KBTBD12	ENST00000405109.1,ENST00000405256.1	chr3	127634317:127634429:127646606:127646877:127648975:127649126,127642923:127642974:127646606:127646877:127648975:127649126,	127646607	127646877	127646636	127646636	Frame_Shift_Del	A	-	p.E367fs
LIHC	TCGA-DD-A39Y-01	KBTBD12	ENST00000405109.1,ENST00000405256.1	chr3	127634317:127634429:127646606:127646877:127648975:127649126,127642923:127642974:127646606:127646877:127648975:127649126,	127646607	127646877	127646725	127646725	Frame_Shift_Del	A	-	p.K397fs
LIHC	TCGA-DD-A39Y-01	KBTBD12	ENST00000405109.1,ENST00000405256.1	chr3	127634317:127634429:127646606:127646877:127648975:127649126,127642923:127642974:127646606:127646877:127648975:127649126,	127646607	127646877	127646785	127646785	Frame_Shift_Del	A	-	p.K417fs
LIHC	TCGA-DD-A39Y-01	RUVBL1	ENST00000464873.1,ENST00000417360.1,ENST00000472125.1,ENST00000322623.5	chr3	127817724:127817788:127819437:127819587:127820401:127820462,	127819438	127819587	127819499	127819499	Frame_Shift_Del	T	-	p.K172fs
LIHC	TCGA-DD-A39Y-01	RUVBL1	ENST00000464873.1,ENST00000417360.1,ENST00000322623.5	chr3	127823615:127823767:127831730:127831863:127838170:127838257,	127831731	127831863	127831806	127831806	Frame_Shift_Del	T	-	p.M36fs
LIHC	TCGA-DD-A39Y-01	EEFSEC	ENST00000483457.1	chr3	127965678:127965886:127980970:127981067:128060075:128060351,	127980971	127981067	127980978	127980978	Frame_Shift_Del	G	-	p.G178fs
LIHC	TCGA-DD-A39Y-01	EEFSEC	ENST00000483457.1	chr3	127965678:127965886:127980970:127981067:128060075:128060351,	127980971	127981067	127981010	127981010	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-DD-A39Y-01	RPN1	ENST00000296255.3,ENST00000497289.1	chr3	128348793:128348986:128350790:128351000:128356641:128356948,	128350791	128351000	128350915	128350915	Frame_Shift_Del	C	-	p.G240fs
LIHC	TCGA-DD-A39Y-01	ACAD9	ENST00000514643.1	chr3	128598471:128598684:128603499:128603589:128612397:128612499,	128603500	128603589	128603503	128603503	Frame_Shift_Del	T	-	p.V53fs
LIHC	TCGA-DD-A39Y-01	ACAD9	ENST00000308982.7	chr3	128598739:128598860:128603495:128603589:128612397:128612499,128598471:128598684:128603495:128603589:128612397:128612499,	128603496	128603589	128603503	128603503	Frame_Shift_Del	T	-	p.V53fs
LIHC	TCGA-DD-A39Y-01	ACAD9	ENST00000508971.1,ENST00000511325.1,ENST00000308982.7,ENST00000511526.1,ENST00000505867.1,ENST00000511227.1,ENST00000505192.1	chr3	128623228:128623348:128624963:128625092:128627027:128627107,	128624964	128625092	128625026	128625026	Frame_Shift_Del	G	-	p.L404fs
LIHC	TCGA-DD-A39Y-01	EFCC1	ENST00000436022.2,ENST00000481536.1,ENST00000480450.1	chr3	128751664:128751809:128753006:128753172:128755819:128755960,	128753007	128753172	128753082	128753082	Frame_Shift_Del	G	-	p.L16fs
LIHC	TCGA-DD-A39Y-01	EFCAB12	ENST00000514900.1,ENST00000505956.1,ENST00000503498.1,ENST00000326085.3	chr3	129123092:129123246:129127487:129127701:129130000:129130197,	129127488	129127701	129127648	129127648	Frame_Shift_Del	C	-	p.G363fs
LIHC	TCGA-DD-A39Y-01	MBD4	ENST00000509828.1,ENST00000429544.2,ENST00000393278.2,ENST00000249910.1	chr3	129150328:129150421:129151345:129151449:129151940:129152090,	129151346	129151449	129151366	129151366	Frame_Shift_Del	A	-	p.C543fs
LIHC	TCGA-DD-A39Y-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155567	129155567	Frame_Shift_Del	T	-	p.N307fs
LIHC	TCGA-DD-A39Y-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155567	129155567	Frame_Shift_Del	T	-	p.N307fs
LIHC	TCGA-DD-A39Y-01	IFT122	ENST00000431818.2,ENST00000512220.1,ENST00000296266.3,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000504021.1,ENST00000440957.2,ENST00000348417.2,ENST00000349441.2	chr3	129196858:129197061:129198627:129198765:129200372:129200537,	129198628	129198765	129198747	129198747	Frame_Shift_Del	G	-	p.V541fs
LIHC	TCGA-DD-A39Y-01	PLXND1	ENST00000324093.4,ENST00000393239.1	chr3	129292436:129292588:129293178:129293333:129294311:129294405,	129293179	129293333	129293235	129293235	Frame_Shift_Del	G	-	p.L877fs
LIHC	TCGA-DD-A39Y-01	COL6A6	ENST00000358511.6	chr3	130363834:130363846:130367912:130368406:130377519:130377616,	130367913	130368406	130368016	130368016	Frame_Shift_Del	T	-	p.A1781fs
LIHC	TCGA-DD-A39Y-01	PIK3R4	ENST00000356763.3	chr3	130442257:130442431:130447306:130447528:130449151:130449286,	130447307	130447528	130447320	130447320	Frame_Shift_Del	A	-	p.F598fs
LIHC	TCGA-DD-A39Y-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743291	130743291	Frame_Shift_Del	T	-	p.N287fs
LIHC	TCGA-DD-A39Y-01	NEK11	ENST00000510769.1	chr3	130852673:130852800:130881251:130881371:130884269:130884363,	130881252	130881371	130881254	130881254	Frame_Shift_Del	A	-	p.Q322fs
LIHC	TCGA-DD-A39Y-01	CPNE4	ENST00000512055.1,ENST00000429747.1,ENST00000515418.1,ENST00000512332.1,ENST00000511604.1,ENST00000502818.1	chr3	131274340:131274395:131283059:131283193:131293914:131293974,	131283060	131283193	131283082	131283082	Frame_Shift_Del	C	-	p.E347fs
LIHC	TCGA-DD-A39Y-01	ACPP	ENST00000475741.1,ENST00000336375.5,ENST00000351273.7	chr3	132068763:132068846:132071563:132071667:132075529:132075577,	132071564	132071667	132071663	132071663	Frame_Shift_Del	A	-	p.K322fs
LIHC	TCGA-DD-A39Y-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132172442:132172538:132172909:132173001:132175078:132175245,	132172910	132173001	132172935	132172935	Frame_Shift_Del	A	-	p.E289fs
LIHC	TCGA-DD-A39Y-01	UBA5	ENST00000468022.1,ENST00000494238.2	chr3	132379444:132379542:132384666:132384712:132384827:132384912,132379742:132379892:132384666:132384712:132384827:132384912,	132384667	132384712	132384688	132384688	Frame_Shift_Del	A	-	p.R61fs
LIHC	TCGA-DD-A39Y-01	UBA5	ENST00000473651.1,ENST00000468227.1,ENST00000493720.2,ENST00000264991.4,ENST00000356232.4,ENST00000494238.2	chr3	132390893:132391021:132394091:132394227:132394448:132394524,	132394092	132394227	132394119	132394119	Frame_Shift_Del	T	-	p.S280fs
LIHC	TCGA-DD-A39Y-01	UBA5	ENST00000468227.1,ENST00000264991.4,ENST00000494112.1,ENST00000356232.4,ENST00000494238.2	chr3	132394449:132394524:132394660:132394767:132395286:132395597,	132394661	132394767	132394699	132394699	Frame_Shift_Del	A	-	p.K355fs
LIHC	TCGA-DD-A39Y-01	UBA5	ENST00000468227.1,ENST00000264991.4,ENST00000494112.1,ENST00000356232.4,ENST00000494238.2	chr3	132394449:132394524:132394660:132394767:132395286:132395597,	132394661	132394767	132394761	132394761	Frame_Shift_Del	A	-	p.P375fs
LIHC	TCGA-DD-A39Y-01	NPHP3	ENST00000326682.8,ENST00000474871.1,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132407917:132408107:132409371:132409494:132410035:132410130,	132409372	132409494	132409446	132409446	Frame_Shift_Del	A	-	p.F873fs
LIHC	TCGA-DD-A39Y-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099674	133099674	Frame_Shift_Del	G	-	p.Q373fs
LIHC	TCGA-DD-A39Y-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099911	133099911	Frame_Shift_Del	G	-	p.E452fs
LIHC	TCGA-DD-A39Y-01	TOPBP1	ENST00000260810.5	chr3	133319416:133320237:133327378:133327540:133327716:133327806,	133327379	133327540	133327489	133327489	Frame_Shift_Del	A	-	p.S1439fs
LIHC	TCGA-DD-A39Y-01	RYK	ENST00000296084.4,ENST00000427044.2,ENST00000460933.1	chr3	133913925:133914026:133921573:133921718:133926315:133926369,	133921574	133921718	133921613	133921613	Frame_Shift_Del	A	-	p.L58fs
LIHC	TCGA-DD-A39Y-01	AMOTL2	ENST00000506326.1,ENST00000249883.5	chr3	134076392:134076605:134077381:134077561:134078124:134078345,	134077382	134077561	134077462	134077462	Frame_Shift_Del	G	-	p.P792fs
LIHC	TCGA-DD-A39Y-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000513145.1	chr3	134076392:134076605:134077381:134077558:134078124:134078345,	134077382	134077558	134077462	134077462	Frame_Shift_Del	G	-	p.P792fs
LIHC	TCGA-DD-A39Y-01	AMOTL2	ENST00000506326.1,ENST00000249883.5	chr3	134076392:134076605:134077381:134077561:134078124:134078345,	134077382	134077561	134077519	134077519	Frame_Shift_Del	G	-	p.P773fs
LIHC	TCGA-DD-A39Y-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000513145.1	chr3	134076392:134076605:134077381:134077558:134078124:134078345,	134077382	134077558	134077519	134077519	Frame_Shift_Del	G	-	p.P773fs
LIHC	TCGA-DD-A39Y-01	EPHB1	ENST00000398015.3	chr3	134644657:134644722:134670212:134670894:134825289:134825445,	134670213	134670894	134670328	134670328	Frame_Shift_Del	G	-	p.R80fs
LIHC	TCGA-DD-A39Y-01	EPHB1	ENST00000493838.1,ENST00000398015.3	chr3	134885783:134885848:134898701:134898824:134911417:134911665,	134898702	134898824	134898730	134898730	Frame_Shift_Del	C	-	p.D596fs
LIHC	TCGA-DD-A39Y-01	PCCB	ENST00000471595.1	chr3	136047599:136047699:136048746:136048826:136052243:136056737,	136048747	136048826	136048786	136048786	Frame_Shift_Del	C	-	p.A513fs
LIHC	TCGA-DD-A39Y-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136096501:136096594:136117590:136117671:136136726:136136814,	136117591	136117671	136117633	136117633	Frame_Shift_Del	A	-	p.I745fs
LIHC	TCGA-DD-A39Y-01	STAG1	ENST00000383202.2,ENST00000487065.1,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136196130:136196254:136219064:136219138:136221469:136221621,	136219065	136219138	136219110	136219110	Frame_Shift_Del	T	-	p.N286fs
LIHC	TCGA-DD-A39Y-01	CLDN18	ENST00000183605.5	chr3	137729057:137729287:137742499:137742664:137743448:137743566,	137742500	137742664	137742546	137742546	Frame_Shift_Del	G	-	p.L89fs
LIHC	TCGA-DD-A39Y-01	MRAS	ENST00000464896.1,ENST00000289104.4,ENST00000494949.1,ENST00000474559.1,ENST00000423968.2	chr3	138117310:138117410:138119375:138119455:138121011:138121034,	138119376	138119455	138119389	138119389	Frame_Shift_Del	A	-	p.E154fs
LIHC	TCGA-DD-A39Y-01	CEP70	ENST00000464035.1,ENST00000481834.1,ENST00000264982.3,ENST00000468900.1,ENST00000462419.1,ENST00000542237.1,ENST00000478673.1,ENST00000474781.1,ENST00000484888.1	chr3	138256019:138256189:138289159:138289340:138289875:138289976,	138289160	138289340	138289179	138289179	Frame_Shift_Del	T	-	p.K149fs
LIHC	TCGA-DD-A39Y-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138376531:138376677:138382747:138382871:138383877:138384045,	138382748	138382871	138382756	138382756	Frame_Shift_Del	T	-	p.T930fs
LIHC	TCGA-DD-A39Y-01	PIK3CB	ENST00000462898.1	chr3	138456548:138456728:138461399:138461597:138474595:138474821,	138461400	138461597	138461437	138461437	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-DD-A39Y-01	PIK3CB	ENST00000289153.2,ENST00000477593.1	chr3	138456548:138456728:138461399:138461623:138474595:138474821,	138461400	138461623	138461437	138461437	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-DD-A39Y-01	SLC25A36	ENST00000507429.1,ENST00000324194.6,ENST00000393015.4,ENST00000502594.1	chr3	140660742:140660937:140675368:140675533:140681968:140682069,140660742:140660937:140675368:140675533:140678304:140678382,	140675369	140675533	140675417	140675417	Frame_Shift_Del	A	-	p.V30fs
LIHC	TCGA-DD-A39Y-01	SLC25A36	ENST00000507429.1,ENST00000324194.6,ENST00000512023.1,ENST00000446041.2,ENST00000512506.1,ENST00000393015.4,ENST00000502594.1	chr3	140675468:140675533:140678304:140678382:140681968:140682069,	140678305	140678382	140678334	140678334	Frame_Shift_Del	C	-	p.S79fs
LIHC	TCGA-DD-A39Y-01	ATP1B3	ENST00000462082.1	chr3	141595696:141595752:141622461:141622590:141626008:141626116,141595696:141595752:141622461:141622590:141644372:141644485,	141622462	141622590	141622486	141622486	Frame_Shift_Del	T	-	p.V31fs
LIHC	TCGA-DD-A39Y-01	TFDP2	ENST00000475734.1	chr3	141712414:141712427:141724282:141724386:141747420:141747439,141713937:141713983:141724282:141724386:141811902:141811969,141713937:141713983:141724282:141724386:141772956:141772991,141713937:141713983:141724282:141724386:141747420:141747439,141713937:141713983:141724282:141724386:141868024:141868302,	141724283	141724386	141724285	141724285	Frame_Shift_Del	T	-	p.M62fs
LIHC	TCGA-DD-A39Y-01	TFDP2	ENST00000475734.1	chr3	141712414:141712427:141724282:141724386:141747420:141747439,141713937:141713983:141724282:141724386:141811902:141811969,141713937:141713983:141724282:141724386:141772956:141772991,141713937:141713983:141724282:141724386:141747420:141747439,141713937:141713983:141724282:141724386:141868024:141868302,	141724283	141724386	141724329	141724329	Frame_Shift_Del	A	-	p.L47fs
LIHC	TCGA-DD-A39Y-01	GK5	ENST00000492097.1,ENST00000480757.1	chr3	141901764:141901891:141903552:141904635:141904770:141904831,	141903553	141904635	141904622	141904622	Frame_Shift_Del	C	-	p.G277fs
LIHC	TCGA-DD-A39Y-01	GK5	ENST00000492097.1,ENST00000392993.2,ENST00000460544.1,ENST00000480757.1,ENST00000544571.1	chr3	141906545:141906621:141917643:141917775:141923536:141923630,	141917644	141917775	141917660	141917660	Frame_Shift_Del	A	-	p.L176fs
LIHC	TCGA-DD-A39Y-01	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142054289:142054351:142066075:142066184:142074242:142074338,	142066076	142066184	142066155	142066155	Frame_Shift_Del	T	-	p.Q1266fs
LIHC	TCGA-DD-A39Y-01	XRN1	ENST00000472697.1,ENST00000264951.4,ENST00000392981.2	chr3	142132976:142133133:142135981:142136071:142137345:142137451,	142135982	142136071	142136018	142136018	Frame_Shift_Del	A	-	p.L467fs
LIHC	TCGA-DD-A39Y-01	XRN1	ENST00000264951.4,ENST00000392981.2,ENST00000463916.1	chr3	142144270:142144380:142145585:142145683:142151502:142151735,	142145586	142145683	142145651	142145651	Frame_Shift_Del	T	-	p.K114fs
LIHC	TCGA-DD-A39Y-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000513291.1	chr3	142178068:142178225:142180781:142180932:142183938:142184082,	142180782	142180932	142180829	142180829	Frame_Shift_Del	T	-	p.N2382fs
LIHC	TCGA-DD-A39Y-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000507620.1	chr3	142215975:142216034:142217438:142217616:142218468:142218560,	142217439	142217616	142217557	142217557	Frame_Shift_Del	T	-	p.R1814fs
LIHC	TCGA-DD-A39Y-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142226772:142226951:142231101:142231312:142232342:142232480,	142231102	142231312	142231130	142231130	Frame_Shift_Del	T	-	p.K1608fs
LIHC	TCGA-DD-A39Y-01	PLS1	ENST00000483373.1,ENST00000495744.1,ENST00000497199.1	chr3	142346657:142346750:142383043:142383149:142388231:142388261,142364137:142364422:142383043:142383149:142388231:142388261,	142383044	142383149	142383084	142383084	Frame_Shift_Del	A	-	p.E2fs
LIHC	TCGA-DD-A39Y-01	TRPC1	ENST00000476941.1,ENST00000273482.6	chr3	142509860:142510000:142511665:142511809:142521010:142521186,	142511666	142511809	142511768	142511768	Frame_Shift_Del	T	-	p.F481fs
LIHC	TCGA-DD-A39Y-01	PCOLCE2	ENST00000485766.1,ENST00000295992.3,ENST00000483986.1	chr3	142557611:142557748:142561765:142561890:142567058:142567164,	142561766	142561890	142561844	142561844	Frame_Shift_Del	A	-	p.F165fs
LIHC	TCGA-DD-A39Y-01	U2SURP	ENST00000488497.3,ENST00000480029.1,ENST00000493598.2,ENST00000467348.1,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142761963:142762118:142769780:142769891:142772517:142772624,	142769781	142769891	142769829	142769829	Frame_Shift_Del	A	-	p.K457fs
LIHC	TCGA-DD-A39Y-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1	chr3	145804573:145804695:145806372:145806498:145809586:145809688,	145806373	145806498	145806469	145806469	Frame_Shift_Del	A	-	p.F303fs
LIHC	TCGA-DD-A39Y-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1,ENST00000469350.1	chr3	145828086:145828235:145838898:145839035:145841924:145842016,	145838899	145839035	145838977	145838977	Frame_Shift_Del	C	-	p.G87fs
LIHC	TCGA-DD-A39Y-01	PLSCR1	ENST00000462666.1,ENST00000487389.1,ENST00000472349.1,ENST00000342435.4,ENST00000494568.1	chr3	146243391:146243434:146246400:146246618:146251256:146251329,	146246401	146246618	146246504	146246504	Frame_Shift_Del	T	-	p.N70fs
LIHC	TCGA-DD-A39Y-01	HLTF	ENST00000392912.2,ENST00000494055.1,ENST00000310053.5,ENST00000465259.1	chr3	148757928:148757943:148759276:148759455:148759952:148760077,	148759277	148759455	148759411	148759411	Frame_Shift_Del	T	-	p.M748fs
LIHC	TCGA-DD-A39Y-01	HLTF	ENST00000467858.1	chr3	148757928:148757943:148759276:148759467:148759952:148760077,	148759277	148759467	148759411	148759411	Frame_Shift_Del	T	-	p.M748fs
LIHC	TCGA-DD-A39Y-01	HPS3	ENST00000486530.1	chr3	148847477:148847727:148857790:148858285:148858803:148858975,	148857791	148858285	148857977	148857977	Frame_Shift_Del	C	-	p.A135fs
LIHC	TCGA-DD-A39Y-01	HPS3	ENST00000460120.1,ENST00000296051.2	chr3	148876452:148876633:148877832:148878066:148879934:148880120,	148877833	148878066	148877860	148877860	Frame_Shift_Del	T	-	p.F634fs
LIHC	TCGA-DD-A39Y-01	CP	ENST00000264613.6,ENST00000490639.1	chr3	148928144:148928166:148930237:148930485:148939433:148939611,	148930238	148930485	148930300	148930300	Frame_Shift_Del	T	-	p.N111fs
LIHC	TCGA-DD-A39Y-01	TM4SF4	ENST00000463068.1,ENST00000305354.4	chr3	149193609:149193699:149205405:149205542:149216508:149216698,	149205406	149205542	149205444	149205444	Frame_Shift_Del	G	-	p.L101fs
LIHC	TCGA-DD-A39Y-01	WWTR1	ENST00000485244.1,ENST00000465804.1,ENST00000467467.1,ENST00000472417.1,ENST00000360632.3	chr3	149243799:149243912:149245622:149245756:149260121:149260226,	149245623	149245756	149245671	149245671	Frame_Shift_Del	G	-	p.P286fs
LIHC	TCGA-DD-A39Y-01	WWTR1	ENST00000465804.1,ENST00000467467.1,ENST00000360632.3	chr3	149260121:149260324:149290650:149290787:149374662:149375093,	149290651	149290787	149290699	149290699	Frame_Shift_Del	A	-	p.S174fs
LIHC	TCGA-DD-A39Y-01	COMMD2	ENST00000491617.1,ENST00000469896.1,ENST00000483708.1	chr3	149469189:149469272:149469996:149470074:149470164:149470237,	149469997	149470074	149470072	149470072	Frame_Shift_Del	C	-	p.V24fs
LIHC	TCGA-DD-A39Y-01	RNF13	ENST00000467996.1,ENST00000491086.1	chr3	149531051:149531140:149570302:149570383:149589815:149589836,	149570303	149570383	149570351	149570351	Frame_Shift_Del	T	-	p.F55fs
LIHC	TCGA-DD-A39Y-01	RNF13	ENST00000467996.1,ENST00000474348.1,ENST00000361785.6,ENST00000344229.3,ENST00000482083.3,ENST00000467977.1,ENST00000392894.3,ENST00000491086.1	chr3	149638920:149639014:149677842:149677923:149678526:149678537,	149677843	149677923	149677911	149677911	Frame_Shift_Del	C	-	p.P257fs
LIHC	TCGA-DD-A39Y-01	SERP1	ENST00000479209.1	chr3	150262099:150262285:150263489:150263565:150263838:150264286,	150263490	150263565	150263506	150263506	Frame_Shift_Del	A	-	p.F48fs
LIHC	TCGA-DD-A39Y-01	EIF2A	ENST00000494558.1	chr3	150276174:150276249:150281301:150281401:150282085:150282164,	150281302	150281401	150281385	150281385	Frame_Shift_Del	A	-	p.K127fs
LIHC	TCGA-DD-A39Y-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150293435:150293549:150300986:150301052,150290282:150290316:150293435:150293549:150299404:150299533,	150293436	150293549	150293543	150293543	Frame_Shift_Del	A	-	p.A497fs
LIHC	TCGA-DD-A39Y-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150299404:150299533:150300986:150301052,150293435:150293549:150299404:150299533:150300986:150301052,	150299405	150299533	150299448	150299448	Frame_Shift_Del	C	-	p.A514fs
LIHC	TCGA-DD-A39Y-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877708	150877708	Frame_Shift_Del	C	-	p.S309fs
LIHC	TCGA-DD-A39Y-01	DHX36	ENST00000481941.1,ENST00000496811.1,ENST00000544526.1,ENST00000329463.5,ENST00000308361.6	chr3	154018382:154018485:154018775:154018916:154021117:154021199,	154018776	154018916	154018859	154018859	Frame_Shift_Del	C	-	p.G425fs
LIHC	TCGA-DD-A39Y-01	DHX36	ENST00000481941.1,ENST00000496811.1,ENST00000544526.1,ENST00000329463.5,ENST00000308361.6	chr3	154018382:154018485:154018775:154018916:154021117:154021199,	154018776	154018916	154018869	154018869	Frame_Shift_Del	A	-	p.F422fs
LIHC	TCGA-DD-A39Y-01	SLC33A1	ENST00000359479.3	chr3	155551645:155551830:155560220:155560408:155571011:155571106,	155560221	155560408	155560344	155560344	Frame_Shift_Del	T	-	p.K280fs
LIHC	TCGA-DD-A39Y-01	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156395701	156395701	Frame_Shift_Del	T	-	p.V72fs
LIHC	TCGA-DD-A39Y-01	GFM1	ENST00000478254.1,ENST00000486715.1,ENST00000264263.5,ENST00000477721.1	chr3	158399895:158399946:158402312:158402457:158407951:158408112,	158402313	158402457	158402316	158402316	Frame_Shift_Del	T	-	p.F590fs
LIHC	TCGA-DD-A39Y-01	GFM1	ENST00000478254.1,ENST00000486715.1,ENST00000264263.5	chr3	158402419:158402457:158407951:158408112:158408927:158408981,	158407952	158408112	158408059	158408059	Frame_Shift_Del	G	-	p.G673fs
LIHC	TCGA-DD-A39Y-01	RARRES1	ENST00000479756.1,ENST00000237696.5	chr3	158422624:158422716:158428526:158428722:158431585:158431648,	158428527	158428722	158428553	158428553	Frame_Shift_Del	T	-	p.N170fs
LIHC	TCGA-DD-A39Y-01	SMC4	ENST00000472991.1	chr3	160117437:160117485:160120463:160120655:160122165:160122292,160119777:160119881:160120463:160120655:160122115:160122124,160117456:160117537:160120463:160120655:160122115:160122124,	160120464	160120655	160120549	160120549	Frame_Shift_Del	A	-	p.Q135fs
LIHC	TCGA-DD-A39Y-01	SMC4	ENST00000465563.1,ENST00000469858.1,ENST00000344722.5,ENST00000489573.1,ENST00000462787.1,ENST00000360111.2,ENST00000497984.1,ENST00000357388.3,ENST00000469762.1	chr3	160129707:160129765:160130113:160130241:160131260:160131272,160129809:160129872:160130113:160130241:160130317:160130637,160129809:160129872:160130113:160130241:160131260:160131272,	160130114	160130241	160130232	160130232	Frame_Shift_Del	A	-	p.Q324fs
LIHC	TCGA-DD-A39Y-01	SMC4	ENST00000468653.1	chr3	160129809:160129872:160130113:160130637:160131260:160131272,	160130114	160130637	160130232	160130232	Frame_Shift_Del	A	-	p.Q324fs
LIHC	TCGA-DD-A39Y-01	SMC4	ENST00000469858.1,ENST00000344722.5,ENST00000462787.1,ENST00000360111.2,ENST00000357388.3,ENST00000462668.1,ENST00000469762.1	chr3	160135510:160135744:160137145:160137331:160138527:160138689,	160137146	160137331	160137291	160137291	Frame_Shift_Del	A	-	p.E606fs
LIHC	TCGA-DD-A39Y-01	KPNA4	ENST00000334256.4	chr3	160239566:160239698:160243587:160243632:160243725:160243895,	160243588	160243632	160243620	160243620	Frame_Shift_Del	G	-	p.L247fs
LIHC	TCGA-DD-A39Y-01	NMD3	ENST00000472947.1,ENST00000351193.2,ENST00000463518.1,ENST00000493066.1,ENST00000460469.1	chr3	160952514:160952643:160952909:160953000:160955900:160955979,	160952910	160953000	160952919	160952919	Frame_Shift_Del	A	-	p.K167fs
LIHC	TCGA-DD-A39Y-01	NMD3	ENST00000472947.1,ENST00000351193.2,ENST00000460469.1	chr3	160967241:160967348:160968043:160968114:160968567:160968678,	160968044	160968114	160968092	160968092	Frame_Shift_Del	A	-	p.R453fs
LIHC	TCGA-DD-A39Y-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547795	165547795	Frame_Shift_Del	T	-	p.T343fs
LIHC	TCGA-DD-A39Y-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167240119:167240272:167245607:167245805:167246839:167247027,	167245608	167245805	167245762	167245762	Frame_Shift_Del	G	-	p.P465fs
LIHC	TCGA-DD-A39Y-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272493	167272493	Frame_Shift_Del	T	-	p.I249fs
LIHC	TCGA-DD-A39Y-01	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272493	167272493	Frame_Shift_Del	T	-	p.I249fs
LIHC	TCGA-DD-A39Y-01	PDCD10	ENST00000470131.1,ENST00000492396.1,ENST00000497056.2,ENST00000461494.1,ENST00000475915.2,ENST00000392750.2,ENST00000473645.2	chr3	167402126:167402177:167405021:167405104:167405402:167405481,	167405022	167405104	167405033	167405033	Frame_Shift_Del	A	-	p.F182fs
LIHC	TCGA-DD-A39Y-01	GOLIM4	ENST00000309027.4,ENST00000470487.1	chr3	167728022:167728206:167728530:167728611:167742313:167742382,	167728531	167728611	167728581	167728581	Frame_Shift_Del	T	-	p.R631fs
LIHC	TCGA-DD-A39Y-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514602	169514602	Frame_Shift_Del	T	-	p.N248fs
LIHC	TCGA-DD-A39Y-01	PHC3	ENST00000495893.2,ENST00000475729.1,ENST00000494943.1	chr3	169863210:169863309:169866873:169867032:169889177:169889238,169863210:169863309:169866873:169867032:169889160:169889238,	169866874	169867032	169866920	169866920	Frame_Shift_Del	G	-	p.P164fs
LIHC	TCGA-DD-A39Y-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998165	169998165	Frame_Shift_Del	A	-	p.K287fs
LIHC	TCGA-DD-A39Y-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078197	170078197	Frame_Shift_Del	C	-	p.S26fs
LIHC	TCGA-DD-A39Y-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078207	170078207	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-DD-A39Y-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078300	170078300	Frame_Shift_Del	C	-	p.P61fs
LIHC	TCGA-DD-A39Y-01	EIF5A2	ENST00000295822.2	chr3	170611137:170611208:170612080:170612212:170624777:170624882,	170612081	170612212	170612144	170612144	Frame_Shift_Del	T	-	p.K113fs
LIHC	TCGA-DD-A39Y-01	EIF5A2	ENST00000474096.1	chr3	170611137:170611208:170612080:170612172:170624777:170624882,	170612081	170612172	170612144	170612144	Frame_Shift_Del	T	-	p.K113fs
LIHC	TCGA-DD-A39Y-01	TNIK	ENST00000488470.1,ENST00000341852.6,ENST00000436636.2,ENST00000357327.5	chr3	170819237:170819422:170824971:170824995:170825853:170825951,	170824972	170824995	170824984	170824984	Frame_Shift_Del	T	-	p.K798fs
LIHC	TCGA-DD-A39Y-01	TNIK	ENST00000284483.8,ENST00000470834.1,ENST00000369326.5,ENST00000436636.2,ENST00000357327.5	chr3	170843700:170843940:170846502:170846667:170855979:170856168,	170846503	170846667	170846527	170846527	Frame_Shift_Del	G	-	p.P583fs
LIHC	TCGA-DD-A39Y-01	PLD1	ENST00000356327.5	chr3	171395355:171395484:171405160:171405374:171406465:171406666,	171405161	171405374	171405328	171405328	Frame_Shift_Del	T	-	p.N529fs
LIHC	TCGA-DD-A39Y-01	FNDC3B	ENST00000415807.2,ENST00000416957.1,ENST00000336824.4	chr3	172058902:172059021:172060800:172060906:172061875:172062024,	172060801	172060906	172060862	172060862	Frame_Shift_Del	G	-	p.R678fs
LIHC	TCGA-DD-A39Y-01	FNDC3B	ENST00000415807.2,ENST00000490832.1,ENST00000416957.1,ENST00000336824.4	chr3	172064116:172064230:172065001:172065151:172070592:172070668,	172065002	172065151	172065048	172065048	Frame_Shift_Del	G	-	p.W804fs
LIHC	TCGA-DD-A39Y-01	NCEH1	ENST00000424772.1,ENST00000538775.1	chr3	172363412:172363482:172365651:172365904:172428636:172428842,	172365652	172365904	172365826	172365826	Frame_Shift_Del	T	-	p.S73fs
LIHC	TCGA-DD-A39Y-01	NCEH1	ENST00000273512.3	chr3	172363412:172363482:172365675:172365904:172428636:172428842,	172365676	172365904	172365826	172365826	Frame_Shift_Del	T	-	p.S73fs
LIHC	TCGA-DD-A39Y-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1	chr3	174951720:174951994:174974199:174974319:175041963:175042114,	174974200	174974319	174974238	174974238	Frame_Shift_Del	T	-	p.D286fs
LIHC	TCGA-DD-A39Y-01	NAALADL2	ENST00000454872.1	chr3	175293828:175293975:175345078:175345174:175455093:175455187,	175345079	175345174	175345099	175345099	Frame_Shift_Del	G	-	p.E607fs
LIHC	TCGA-DD-A39Y-01	PIK3CA	ENST00000263967.3	chr3	178947791:178947909:178948012:178948164:178951881:178957881,	178948013	178948164	178948055	178948055	Frame_Shift_Del	A	-	p.K944fs
LIHC	TCGA-DD-A39Y-01	MFN1	ENST00000357390.4,ENST00000280653.7	chr3	179065522:179065598:179066632:179066751:179069687:179069823,	179066633	179066751	179066741	179066741	Frame_Shift_Del	T	-	p.H34fs
LIHC	TCGA-DD-A39Y-01	MRPL47	ENST00000259038.2,ENST00000476781.1,ENST00000392659.2	chr3	179306618:179306783:179310431:179310527:179311552:179311679,	179310432	179310527	179310506	179310506	Frame_Shift_Del	A	-	p.V185fs
LIHC	TCGA-DD-A39Y-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408038	179408038	Frame_Shift_Del	G	-	p.G102fs
LIHC	TCGA-DD-A39Y-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408081	179408081	Frame_Shift_Del	T	-	p.I116fs
LIHC	TCGA-DD-A39Y-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372674	180372674	Frame_Shift_Del	A	-	p.L353fs
LIHC	TCGA-DD-A39Y-01	FXR1	ENST00000468861.1	chr3	180651121:180651174:180652925:180653019:180665652:180665724,180630472:180630524:180652925:180653019:180665652:180665724,	180652926	180653019	180652951	180652951	Frame_Shift_Del	T	-	p.F44fs
LIHC	TCGA-DD-A39Y-01	FXR1	ENST00000468861.1	chr3	180651121:180651174:180652925:180653019:180665652:180665724,180630472:180630524:180652925:180653019:180665652:180665724,	180652926	180653019	180652986	180652986	Frame_Shift_Del	A	-	p.I55fs
LIHC	TCGA-DD-A39Y-01	FXR1	ENST00000357559.4,ENST00000491062.1,ENST00000445140.2,ENST00000468861.1,ENST00000465551.1,ENST00000472339.1,ENST00000480918.1,ENST00000469882.1,ENST00000475315.1,ENST00000484958.1,ENST00000305586.7	chr3	180666134:180666283:180666508:180666602:180667014:180667038,	180666509	180666602	180666565	180666565	Frame_Shift_Del	T	-	p.I159fs
LIHC	TCGA-DD-A39Y-01	FXR1	ENST00000357559.4,ENST00000491062.1,ENST00000445140.2,ENST00000468861.1,ENST00000472339.1,ENST00000480918.1,ENST00000475315.1,ENST00000305586.7	chr3	180669117:180669256:180671549:180671628:180675606:180675716,	180671550	180671628	180671564	180671564	Frame_Shift_Del	A	-	p.V272fs
LIHC	TCGA-DD-A39Y-01	FXR1	ENST00000357559.4,ENST00000480918.1,ENST00000475315.1,ENST00000305586.7	chr3	180688862:180688943:180693100:180693192:180693909:180694070,180688054:180688146:180693100:180693192:180693909:180694070,	180693101	180693192	180693164	180693164	Frame_Shift_Del	A	-	p.E556fs
LIHC	TCGA-DD-A39Y-01	DNAJC19	ENST00000478723.1,ENST00000479269.1,ENST00000486355.1,ENST00000382564.2	chr3	180703713:180703784:180705810:180705884:180705965:180706017,180704785:180704810:180705810:180705884:180707387:180707491,180704785:180704810:180705810:180705884:180705965:180706017,	180705811	180705884	180705829	180705829	Frame_Shift_Del	A	-	p.F37fs
LIHC	TCGA-DD-A39Y-01	ATP11B	ENST00000323116.5,ENST00000493826.1	chr3	182538047:182538164:182545907:182545997:182547459:182547540,	182545908	182545997	182545931	182545931	Frame_Shift_Del	A	-	p.P56fs
LIHC	TCGA-DD-A39Y-01	ATP11B	ENST00000323116.5,ENST00000493826.1	chr3	182538047:182538164:182545907:182545997:182547459:182547540,	182545908	182545997	182545986	182545986	Frame_Shift_Del	T	-	p.F75fs
LIHC	TCGA-DD-A39Y-01	DCUN1D1	ENST00000492563.1	chr3	182681787:182681837:182683466:182683541:182698274:182698308,	182683467	182683541	182683472	182683472	Frame_Shift_Del	T	-	p.T25fs
LIHC	TCGA-DD-A39Y-01	KLHL24	ENST00000242810.6,ENST00000454652.2	chr3	183361267:183361330:183368083:183369064:183381245:183381430,	183368084	183369064	183368259	183368259	Frame_Shift_Del	T	-	p.F40fs
LIHC	TCGA-DD-A39Y-01	YEATS2	ENST00000305135.5	chr3	183442206:183442319:183446477:183446639:183454505:183454617,	183446478	183446639	183446591	183446591	Frame_Shift_Del	G	-	p.W255fs
LIHC	TCGA-DD-A39Y-01	YEATS2	ENST00000305135.5	chr3	183465459:183465504:183469860:183470041:183471913:183472153,	183469861	183470041	183469973	183469973	Frame_Shift_Del	C	-	p.A361fs
LIHC	TCGA-DD-A39Y-01	ABCC5	ENST00000437205.1,ENST00000334444.6,ENST00000265586.6	chr3	183655688:183655848:183660514:183660704:183663637:183663727,	183660515	183660704	183660540	183660540	Frame_Shift_Del	A	-	p.I1223fs
LIHC	TCGA-DD-A39Y-01	ABCC5	ENST00000437205.1,ENST00000492216.1,ENST00000334444.6,ENST00000265586.6	chr3	183699514:183699662:183700238:183700412:183700561:183700795,	183700239	183700412	183700260	183700260	Frame_Shift_Del	A	-	p.F326fs
LIHC	TCGA-DD-A39Y-01	EIF2B5	ENST00000491144.1	chr3	183854399:183854524:183855407:183855863:183855953:183856034,	183855408	183855863	183855703	183855703	Frame_Shift_Del	A	-	p.E175fs
LIHC	TCGA-DD-A39Y-01	EIF2B5	ENST00000273783.3,ENST00000481054.1,ENST00000491008.1,ENST00000444495.1	chr3	183855407:183855593:183855685:183855863:183855953:183856034,	183855686	183855863	183855703	183855703	Frame_Shift_Del	A	-	p.E175fs
LIHC	TCGA-DD-A39Y-01	EIF2B5	ENST00000491144.1	chr3	183854399:183854524:183855407:183855863:183855953:183856034,	183855408	183855863	183855821	183855821	Frame_Shift_Del	T	-	p.H214fs
LIHC	TCGA-DD-A39Y-01	EIF2B5	ENST00000273783.3,ENST00000481054.1,ENST00000491008.1,ENST00000444495.1	chr3	183855407:183855593:183855685:183855863:183855953:183856034,	183855686	183855863	183855821	183855821	Frame_Shift_Del	T	-	p.H214fs
LIHC	TCGA-DD-A39Y-01	EIF2B5	ENST00000273783.3,ENST00000491144.1,ENST00000444495.1	chr3	183860839:183860930:183861229:183861353:183861886:183862012,	183861230	183861353	183861293	183861293	Frame_Shift_Del	C	-	p.F603fs
LIHC	TCGA-DD-A39Y-01	EIF4G1	ENST00000455679.1,ENST00000411531.1,ENST00000342981.4,ENST00000346169.2,ENST00000319274.6,ENST00000414031.1,ENST00000450424.1	chr3	184033919:184034006:184035108:184035285:184035504:184035604,	184035109	184035285	184035133	184035133	Frame_Shift_Del	C	-	p.P59fs
LIHC	TCGA-DD-A39Y-01	VPS8	ENST00000421069.1,ENST00000436792.2,ENST00000492449.1,ENST00000287546.4,ENST00000437079.3	chr3	184603897:184603944:184612490:184612713:184616352:184616442,	184612491	184612713	184612519	184612519	Frame_Shift_Del	A	-	p.K604fs
LIHC	TCGA-DD-A39Y-01	VPS8	ENST00000421069.1,ENST00000436792.2,ENST00000492449.1,ENST00000287546.4,ENST00000437079.3	chr3	184603897:184603944:184612490:184612713:184616352:184616442,	184612491	184612713	184612645	184612645	Frame_Shift_Del	A	-	p.K647fs
LIHC	TCGA-DD-A39Y-01	EHHADH	ENST00000475987.1	chr3	184953077:184953250:184966201:184966305:184971736:184971819,	184966202	184966305	184966242	184966242	Frame_Shift_Del	T	-	p.K46fs
LIHC	TCGA-DD-A39Y-01	MAP3K13	ENST00000443863.1,ENST00000438053.1,ENST00000424227.1,ENST00000446828.1,ENST00000535426.1,ENST00000265026.3	chr3	185195113:185195184:185198019:185198317:185200142:185200244,	185198020	185198317	185198204	185198204	Frame_Shift_Del	C	-	p.P896fs
LIHC	TCGA-DD-A39Y-01	LIPH	ENST00000296252.4	chr3	185241858:185241948:185245271:185245373:185251358:185251448,	185245272	185245373	185245315	185245315	Frame_Shift_Del	G	-	p.P195fs
LIHC	TCGA-DD-A39Y-01	SENP2	ENST00000430355.1,ENST00000465201.1,ENST00000545472.1,ENST00000296257.5	chr3	185307901:185307957:185316199:185316333:185318552:185318613,185307901:185307957:185316199:185316333:185316745:185316812,	185316200	185316333	185316320	185316320	Frame_Shift_Del	C	-	p.A93fs
LIHC	TCGA-DD-A39Y-01	SENP2	ENST00000458551.1	chr3	185307901:185307957:185316181:185316333:185316745:185316812,	185316182	185316333	185316320	185316320	Frame_Shift_Del	C	-	p.A93fs
LIHC	TCGA-DD-A39Y-01	SENP2	ENST00000413407.1,ENST00000473760.1,ENST00000545472.1,ENST00000427465.2,ENST00000296257.5	chr3	185324117:185324286:185327034:185327138:185329438:185329533,	185327035	185327138	185327116	185327116	Frame_Shift_Del	C	-	p.P234fs
LIHC	TCGA-DD-A39Y-01	TRA2B	ENST00000382191.4,ENST00000487615.1,ENST00000453386.2,ENST00000492417.1,ENST00000456380.1	chr3	185639830:185639914:185641583:185641772:185643251:185643414,	185641584	185641772	185641759	185641759	Frame_Shift_Del	G	-	p.P116fs
LIHC	TCGA-DD-A39Y-01	TRA2B	ENST00000465245.1	chr3	185639830:185639914:185641583:185641796:185643251:185643414,	185641584	185641796	185641759	185641759	Frame_Shift_Del	G	-	p.P116fs
LIHC	TCGA-DD-A39Y-01	TBCCD1	ENST00000338733.5,ENST00000424280.1,ENST00000446782.1	chr3	186264129:186264744:186268917:186269068:186272042:186272157,	186268918	186269068	186269020	186269020	Frame_Shift_Del	T	-	p.E531fs
LIHC	TCGA-DD-A39Y-01	KNG1	ENST00000447445.1,ENST00000265023.4,ENST00000287611.2	chr3	186456887:186456995:186457116:186457203:186459310:186459388,	186457117	186457203	186457162	186457162	Frame_Shift_Del	A	-	p.K363fs
LIHC	TCGA-DD-A39Y-01	ST6GAL1	ENST00000169298.3,ENST00000448044.1	chr3	186756529:186756661:186760441:186761098:186769036:186769134,	186760442	186761098	186760582	186760582	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-DD-A39Y-01	ST6GAL1	ENST00000169298.3,ENST00000448044.1	chr3	186756529:186756661:186760441:186761098:186769036:186769134,	186760442	186761098	186760872	186760872	Frame_Shift_Del	G	-	p.K127fs
LIHC	TCGA-DD-A39Y-01	ST6GAL1	ENST00000455441.1	chr3	186760895:186761098:186769036:186769134:186790636:186790689,186681572:186681714:186769036:186769134:186790636:186790689,	186769037	186769134	186769104	186769104	Frame_Shift_Del	A	-	p.T225fs
LIHC	TCGA-DD-A39Y-01	MASP1	ENST00000468121.1,ENST00000337774.5	chr3	186944194:186944308:186947547:186947685:186959268:186959343,	186947548	186947685	186947597	186947597	Frame_Shift_Del	G	-	p.A464fs
LIHC	TCGA-DD-A39Y-01	MASP1	ENST00000296280.6,ENST00000392472.2	chr3	186947547:186947685:186959268:186959343:186961271:186961373,186951871:186954355:186959268:186959343:186961271:186961373,	186959269	186959343	186959294	186959294	Frame_Shift_Del	C	-	p.G426fs
LIHC	TCGA-DD-A39Y-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327346	188327346	Frame_Shift_Del	T	-	p.I276fs
LIHC	TCGA-DD-A39Y-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327388	188327388	Frame_Shift_Del	C	-	p.A290fs
LIHC	TCGA-DD-A39Y-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327540	188327540	Frame_Shift_Del	A	-	p.N341fs
LIHC	TCGA-DD-A39Y-01	LPP	ENST00000471917.1,ENST00000543006.1,ENST00000312675.4	chr3	188327008:188327632:188426054:188426181:188477900:188477989,	188426055	188426181	188426133	188426133	Frame_Shift_Del	A	-	p.K399fs
LIHC	TCGA-DD-A39Y-01	TP63	ENST00000354600.5,ENST00000392463.2,ENST00000440651.2,ENST00000456148.1,ENST00000449992.1,ENST00000392460.3,ENST00000382063.4,ENST00000264731.3	chr3	189590647:189590784:189604182:189604340:189607128:189607273,	189604183	189604340	189604235	189604235	Frame_Shift_Del	A	-	p.K468fs
LIHC	TCGA-DD-A39Y-01	FGF12	ENST00000264730.3,ENST00000430714.1,ENST00000454309.2,ENST00000450716.1,ENST00000445105.2,ENST00000448795.1	chr3	191861848:191861916:191888246:191888445:192053149:192053253,	191888247	191888445	191888399	191888399	Frame_Shift_Del	T	-	p.N154fs
LIHC	TCGA-DD-A39Y-01	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000450950.2	chr3	193182728:193182917:193183813:193183971:193185104:193185137,	193183814	193183971	193183897	193183897	Frame_Shift_Del	C	-	p.D397fs
LIHC	TCGA-DD-A39Y-01	ATP13A4	ENST00000392443.3	chr3	193182728:193182917:193183870:193183971:193185104:193185137,	193183871	193183971	193183897	193183897	Frame_Shift_Del	C	-	p.D397fs
LIHC	TCGA-DD-A39Y-01	OPA1	ENST00000419435.1	chr3	193311140:193311198:193332511:193332830:193333462:193333559,193321288:193321346:193332511:193332830:193333462:193333559,	193332512	193332830	193332773	193332773	Frame_Shift_Del	A	-	p.L98fs
LIHC	TCGA-DD-A39Y-01	OPA1	ENST00000475899.1,ENST00000392438.3,ENST00000361150.2,ENST00000361715.2,ENST00000361908.3,ENST00000361510.2,ENST00000361828.2	chr3	193360553:193360634:193360763:193360838:193361161:193361233,	193360764	193360838	193360803	193360803	Frame_Shift_Del	A	-	p.K424fs
LIHC	TCGA-DD-A39Y-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194146070:194146258:194147803:194147981:194149573:194149646,	194147804	194147981	194147850	194147850	Frame_Shift_Del	A	-	p.W1027fs
LIHC	TCGA-DD-A39Y-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194165453:194165515:194167655:194167844:194168580:194168738,	194167656	194167844	194167727	194167727	Frame_Shift_Del	T	-	p.I476fs
LIHC	TCGA-DD-A39Y-01	ACAP2	ENST00000439758.1,ENST00000326793.6,ENST00000423531.1	chr3	195053810:195053852:195057660:195057705:195063199:195063338,	195057661	195057705	195057684	195057684	Frame_Shift_Del	T	-	p.R185fs
LIHC	TCGA-DD-A39Y-01	APOD	ENST00000458447.1,ENST00000421243.1,ENST00000343267.3,ENST00000453131.1	chr3	195295892:195296006:195298147:195298236:195300720:195300842,	195298148	195298236	195298187	195298187	Frame_Shift_Del	G	-	p.L99fs
LIHC	TCGA-DD-A39Y-01	APOD	ENST00000458447.1,ENST00000421243.1,ENST00000343267.3,ENST00000453131.1	chr3	195295892:195296006:195298147:195298236:195300720:195300842,	195298148	195298236	195298195	195298195	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-DD-A39Y-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195451713	195451713	Frame_Shift_Del	C	-	p.T80fs
LIHC	TCGA-DD-A39Y-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453192	195453192	Frame_Shift_Del	C	-	p.S402fs
LIHC	TCGA-DD-A39Y-01	MUC4	ENST00000466475.1,ENST00000477086.1,ENST00000448861.1,ENST00000346145.4,ENST00000463781.3,ENST00000478156.1,ENST00000392407.2,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1,ENST00000349607.4	chr3	195492140:195492320:195493533:195493622:195495892:195496023,	195493534	195493622	195493602	195493602	Frame_Shift_Del	T	-	p.N4517fs
LIHC	TCGA-DD-A39Y-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510244	195510244	Frame_Shift_Del	G	-	p.P2736fs
LIHC	TCGA-DD-A39Y-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195515236	195515236	Frame_Shift_Del	G	-	p.P1072fs
LIHC	TCGA-DD-A39Y-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516480	195516480	Frame_Shift_Del	G	-	p.P657fs
LIHC	TCGA-DD-A39Y-01	SLC51A	ENST00000475672.1,ENST00000484407.1,ENST00000296327.5	chr3	195954949:195955144:195955679:195955791:195956785:195956932,	195955680	195955791	195955742	195955742	Frame_Shift_Del	C	-	p.T195fs
LIHC	TCGA-DD-A39Y-01	PCYT1A	ENST00000292823.2,ENST00000431016.1,ENST00000419333.1	chr3	195965661:195965765:195966417:195966606:195968818:195968941,	195966418	195966606	195966504	195966504	Frame_Shift_Del	T	-	p.S271fs
LIHC	TCGA-DD-A39Y-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196083507:196083717:196088714:196088794:196089164:196089415,	196088715	196088794	196088753	196088753	Frame_Shift_Del	T	-	p.R424fs
LIHC	TCGA-DD-A39Y-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196089164:196089558:196094898:196095026:196096291:196096382,	196094899	196095026	196094917	196094917	Frame_Shift_Del	G	-	p.P272fs
LIHC	TCGA-DD-A39Y-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4	chr3	196096291:196096382:196098766:196098913:196118683:196118796,	196098767	196098913	196098861	196098861	Frame_Shift_Del	T	-	p.N174fs
LIHC	TCGA-DD-A39Y-01	WDR53	ENST00000332629.5	chr3	196281064:196281678:196287866:196288362:196293747:196294178,	196287867	196288362	196288206	196288206	Frame_Shift_Del	C	-	p.R47fs
LIHC	TCGA-DD-A39Y-01	PAK2	ENST00000327134.3	chr3	196544927:196545027:196547241:196547438:196554066:196554204,	196547242	196547438	196547351	196547351	Frame_Shift_Del	C	-	p.G421fs
LIHC	TCGA-DD-A39Y-01	PAK2	ENST00000327134.3	chr3	196547264:196547438:196554066:196554204:196555189:196555300,	196554067	196554204	196554173	196554173	Frame_Shift_Del	A	-	p.E486fs
LIHC	TCGA-DD-A39Y-01	DLG1	ENST00000450955.1,ENST00000346964.2,ENST00000357674.4	chr3	196803456:196803556:196807921:196807988:196812450:196812529,	196807922	196807988	196807936	196807936	Frame_Shift_Del	T	-	p.T664fs
LIHC	TCGA-DD-A39Y-01	FYTTD1	ENST00000415708.2,ENST00000424384.2,ENST00000428395.2,ENST00000241502.4	chr3	197503797:197503872:197505208:197505335:197508681:197509005,	197505209	197505335	197505329	197505329	Frame_Shift_Del	A	-	p.G193fs
LIHC	TCGA-DD-A39Y-01	LRCH3	ENST00000461674.1,ENST00000483442.1,ENST00000441090.2,ENST00000536618.1,ENST00000414675.2,ENST00000438796.2,ENST00000425562.2,ENST00000334859.4	chr3	197592293:197592342:197592982:197593090:197597030:197597047,	197592983	197593090	197593055	197593055	Frame_Shift_Del	T	-	p.L613fs
LIHC	TCGA-DD-A39Y-01	GAK	ENST00000511163.1,ENST00000314167.4,ENST00000509566.1	chr4	861134:861220:862326:862473:864498:864692,	862327	862473	862397	862397	Frame_Shift_Del	G	-	p.P775fs
LIHC	TCGA-DD-A39Y-01	RNF212	ENST00000508428.1	chr4	1073430:1073476:1075354:1075407:1079683:1079742,	1075355	1075407	1075388	1075388	Frame_Shift_Del	T	-	p.T128fs
LIHC	TCGA-DD-A39Y-01	MAEA	ENST00000509531.1,ENST00000514708.1	chr4	1309184:1309388:1326544:1326653:1330648:1330782,	1326545	1326653	1326608	1326608	Frame_Shift_Del	G	-	p.M240fs
LIHC	TCGA-DD-A39Y-01	MAEA	ENST00000509531.1,ENST00000514708.1	chr4	1309184:1309388:1326544:1326653:1330648:1330782,	1326545	1326653	1326643	1326643	Frame_Shift_Del	C	-	p.S252fs
LIHC	TCGA-DD-A39Y-01	LETM1	ENST00000466175.1	chr4	1843073:1843524:1850875:1850936:1857595:1857682,	1850876	1850936	1850890	1850890	Frame_Shift_Del	C	-	p.G43fs
LIHC	TCGA-DD-A39Y-01	NELFA	ENST00000431323.1	chr4	1991434:1991596:1993270:1993457:2010476:2010562,	1993271	1993457	1993273	1993273	Frame_Shift_Del	T	-	p.K138fs
LIHC	TCGA-DD-A39Y-01	NELFA	ENST00000411638.2	chr4	1991434:1991596:1993270:1993442:2010476:2010562,	1993271	1993442	1993273	1993273	Frame_Shift_Del	T	-	p.K138fs
LIHC	TCGA-DD-A39Y-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698177	2698177	Frame_Shift_Del	A	-	p.K832fs
LIHC	TCGA-DD-A39Y-01	SH3BP2	ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000512014.1,ENST00000356331.5,ENST00000515737.1,ENST00000452765.2,ENST00000504294.1,ENST00000508385.1	chr4	2826391:2826486:2826852:2826923:2828956:2829023,2826339:2826457:2826852:2826923:2828956:2829023,	2826853	2826923	2826896	2826896	Frame_Shift_Del	A	-	p.E134fs
LIHC	TCGA-DD-A39Y-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831252	2831252	Frame_Shift_Del	C	-	p.P208fs
LIHC	TCGA-DD-A39Y-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000355842.3,ENST00000398123.2,ENST00000264758.7,ENST00000446856.1,ENST00000509039.1,ENST00000503169.1,ENST00000511797.1,ENST00000398125.1,ENST00000503455.2,ENST00000508684.1	chr4	2877622:2877837:2883624:2883787:2886241:2886296,	2883625	2883787	2883681	2883681	Frame_Shift_Del	C	-	p.N84fs
LIHC	TCGA-DD-A39Y-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000355842.3,ENST00000398123.2,ENST00000264758.7,ENST00000446856.1,ENST00000509039.1,ENST00000503169.1,ENST00000511797.1,ENST00000398125.1,ENST00000503455.2,ENST00000508684.1	chr4	2877622:2877837:2883624:2883787:2886241:2886296,	2883625	2883787	2883717	2883717	Frame_Shift_Del	T	-	p.D96fs
LIHC	TCGA-DD-A39Y-01	MFSD10	ENST00000507272.1	chr4	2934077:2934239:2934326:2934417:2934832:2934904,	2934327	2934417	2934406	2934406	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-DD-A39Y-01	MFSD10	ENST00000503596.1	chr4	2934077:2934239:2934326:2934485:2934832:2934904,2934077:2934136:2934326:2934485:2934832:2934904,	2934327	2934485	2934406	2934406	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-DD-A39Y-01	NOP14	ENST00000416614.2,ENST00000314262.6	chr4	2941016:2941070:2941253:2941372:2943308:2943443,	2941254	2941372	2941339	2941339	Frame_Shift_Del	T	-	p.S745fs
LIHC	TCGA-DD-A39Y-01	NOP14	ENST00000416614.2,ENST00000314262.6	chr4	2941016:2941070:2941253:2941372:2943308:2943443,	2941254	2941372	2941345	2941345	Frame_Shift_Del	T	-	p.M743fs
LIHC	TCGA-DD-A39Y-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986269	2986269	Frame_Shift_Del	A	-	p.K29fs
LIHC	TCGA-DD-A39Y-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3176447:3176526:3176672:3176834:3179058:3179114,	3176673	3176834	3176723	3176723	Frame_Shift_Del	T	-	p.A1432fs
LIHC	TCGA-DD-A39Y-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3179058:3179114:3180024:3180173:3182241:3182378,	3180025	3180173	3180053	3180053	Frame_Shift_Del	T	-	p.F1500fs
LIHC	TCGA-DD-A39Y-01	TMEM128	ENST00000382753.4,ENST00000254742.2	chr4	4238602:4238804:4239553:4239662:4242047:4242206,4237279:4237983:4239553:4239662:4242047:4242206,	4239554	4239662	4239592	4239592	Frame_Shift_Del	C	-	p.V134fs
LIHC	TCGA-DD-A39Y-01	LYAR	ENST00000343470.4,ENST00000452476.1	chr4	4281173:4281257:4281368:4281476:4283509:4283624,	4281369	4281476	4281438	4281438	Frame_Shift_Del	G	-	p.P92fs
LIHC	TCGA-DD-A39Y-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5664833:5664973:5667241:5667376:5682986:5683040,	5667242	5667376	5667344	5667344	Frame_Shift_Del	C	-	p.G221fs
LIHC	TCGA-DD-A39Y-01	MAN2B2	ENST00000505907.1,ENST00000285599.3,ENST00000504248.1	chr4	6606974:6607056:6610833:6611025:6611524:6611768,	6610834	6611025	6610903	6610903	Frame_Shift_Del	G	-	p.Q628fs
LIHC	TCGA-DD-A39Y-01	KIAA0232	ENST00000307659.5,ENST00000425103.1	chr4	6873300:6873409:6878386:6878484:6882513:6882640,	6878387	6878484	6878457	6878457	Frame_Shift_Del	T	-	p.N1327fs
LIHC	TCGA-DD-A39Y-01	TBC1D14	ENST00000409757.4,ENST00000410031.1,ENST00000448507.1,ENST00000446947.2,ENST00000451522.2,ENST00000439515.2	chr4	7000909:7000929:7002871:7002978:7006570:7006651,	7002872	7002978	7002965	7002965	Frame_Shift_Del	A	-	p.L419fs
LIHC	TCGA-DD-A39Y-01	TBC1D14	ENST00000409757.4,ENST00000410031.1,ENST00000448507.1,ENST00000446947.2,ENST00000451522.2	chr4	7016174:7016284:7026730:7026989:7032053:7032547,	7026731	7026989	7026759	7026759	Frame_Shift_Del	C	-	p.P596fs
LIHC	TCGA-DD-A39Y-01	SORCS2	ENST00000329016.9,ENST00000507866.2	chr4	7715966:7716100:7716909:7717038:7719738:7719910,	7716910	7717038	7716932	7716932	Frame_Shift_Del	T	-	p.S718fs
LIHC	TCGA-DD-A39Y-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8228731	8228731	Frame_Shift_Del	T	-	p.L361fs
LIHC	TCGA-DD-A39Y-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229685	8229685	Frame_Shift_Del	C	-	p.A679fs
LIHC	TCGA-DD-A39Y-01	SLC2A9	ENST00000503280.1,ENST00000512342.1	chr4	9781490:9781689:9828043:9828224:9836504:9836632,9800701:9800865:9828043:9828224:9836504:9836632,	9828044	9828224	9828133	9828133	Frame_Shift_Del	T	-	p.N475fs
LIHC	TCGA-DD-A39Y-01	SLC2A9	ENST00000309065.3,ENST00000506583.1,ENST00000264784.3	chr4	9836504:9836632:9889190:9889266:9892233:9892335,	9889191	9889266	9889255	9889255	Frame_Shift_Del	G	-	p.P380fs
LIHC	TCGA-DD-A39Y-01	SLC2A9	ENST00000505104.1,ENST00000309065.3,ENST00000506583.1,ENST00000264784.3	chr4	9892233:9892335:9909858:9909969:9922008:9922196,	9909859	9909969	9909937	9909937	Frame_Shift_Del	T	-	p.K316fs
LIHC	TCGA-DD-A39Y-01	SLC2A9	ENST00000264784.3	chr4	9998404:9998565:10020598:10020697:10027527:10027630,9998404:9998565:10020598:10020697:10022903:10023107,	10020599	10020697	10020605	10020605	Frame_Shift_Del	G	-	p.P52fs
LIHC	TCGA-DD-A39Y-01	WDR1	ENST00000508949.1,ENST00000502962.1,ENST00000506246.1,ENST00000502702.1,ENST00000382451.2,ENST00000505543.1,ENST00000499869.2,ENST00000510848.1,ENST00000504739.1,ENST00000382452.2	chr4	10089399:10089564:10089916:10089997:10090287:10090365,	10089917	10089997	10089970	10089970	Frame_Shift_Del	C	-	p.E222fs
LIHC	TCGA-DD-A39Y-01	RAB28	ENST00000288723.4,ENST00000338176.4,ENST00000330852.5	chr4	13383114:13383218:13462322:13462452:13475941:13475946,	13462323	13462452	13462424	13462424	Frame_Shift_Del	T	-	p.N97fs
LIHC	TCGA-DD-A39Y-01	PROM1	ENST00000540805.1,ENST00000447510.2,ENST00000539194.1,ENST00000508167.1,ENST00000543373.1,ENST00000510224.1,ENST00000505450.1	chr4	15989285:15989339:15991354:15991447:15992844:15992916,	15991355	15991447	15991417	15991417	Frame_Shift_Del	T	-	p.R663fs
LIHC	TCGA-DD-A39Y-01	PROM1	ENST00000508167.1,ENST00000511153.1,ENST00000543373.1,ENST00000505450.1	chr4	16026898:16026935:16034926:16035132:16040568:16040624,	16034927	16035132	16034987	16034987	Frame_Shift_Del	T	-	p.N141fs
LIHC	TCGA-DD-A39Y-01	TAPT1	ENST00000505603.1,ENST00000304584.8,ENST00000399920.3,ENST00000513782.1,ENST00000405303.2	chr4	16177773:16177851:16181199:16181280:16188157:16188227,	16181200	16181280	16181226	16181226	Frame_Shift_Del	T	-	p.N324fs
LIHC	TCGA-DD-A39Y-01	LCORL	ENST00000510451.1,ENST00000539056.1	chr4	17887690:17887784:17910716:17910968:17963525:17963655,17847312:17847524:17910716:17910968:17963525:17963655,	17910717	17910968	17910911	17910911	Frame_Shift_Del	T	-	p.K163fs
LIHC	TCGA-DD-A39Y-01	SLIT2	ENST00000273739.5,ENST00000508824.1,ENST00000503837.1,ENST00000504154.1,ENST00000503823.1	chr4	20270432:20270504:20469374:20469446:20482338:20482410,	20469375	20469446	20469392	20469392	Frame_Shift_Del	A	-	p.Q138fs
LIHC	TCGA-DD-A39Y-01	PPARGC1A	ENST00000264867.2,ENST00000506055.1,ENST00000509702.1	chr4	23803352:23803504:23803846:23803968:23814369:23814490,	23803847	23803968	23803888	23803888	Frame_Shift_Del	A	-	p.F700fs
LIHC	TCGA-DD-A39Y-01	PI4K2B	ENST00000264864.6,ENST00000512921.1	chr4	25258164:25258296:25260658:25260812:25262145:25262213,	25260659	25260812	25260751	25260751	Frame_Shift_Del	A	-	p.R283fs
LIHC	TCGA-DD-A39Y-01	PI4K2B	ENST00000264864.6,ENST00000512921.1	chr4	25270064:25270198:25270765:25270825:25278635:25278928,	25270766	25270825	25270784	25270784	Frame_Shift_Del	A	-	p.K411fs
LIHC	TCGA-DD-A39Y-01	ZCCHC4	ENST00000302874.4	chr4	25366075:25366127:25366643:25366788:25370650:25371648,	25366644	25366788	25366702	25366702	Frame_Shift_Del	C	-	p.G440fs
LIHC	TCGA-DD-A39Y-01	ANAPC4	ENST00000510092.1,ENST00000315368.3,ENST00000515848.1	chr4	25417087:25417162:25418046:25418220:25419237:25419361,	25418047	25418220	25418100	25418100	Frame_Shift_Del	T	-	p.V652fs
LIHC	TCGA-DD-A39Y-01	ARAP2	ENST00000303965.4	chr4	36067619:36069900:36075310:36075445:36081837:36081901,	36075311	36075445	36075379	36075379	Frame_Shift_Del	T	-	p.I1559fs
LIHC	TCGA-DD-A39Y-01	TBC1D1	ENST00000446803.2,ENST00000261439.4,ENST00000508802.1,ENST00000491553.1	chr4	38016503:38016594:38019974:38020064:38022211:38022316,	38019975	38020064	38020014	38020014	Frame_Shift_Del	A	-	p.K309fs
LIHC	TCGA-DD-A39Y-01	TBC1D1	ENST00000446803.2,ENST00000421339.2,ENST00000261439.4	chr4	38037208:38037319:38051238:38051519:38055819:38055865,38047491:38047524:38051238:38051519:38055819:38055865,	38051239	38051519	38051255	38051255	Frame_Shift_Del	A	-	p.E549fs
LIHC	TCGA-DD-A39Y-01	TBC1D1	ENST00000261439.4,ENST00000510573.2,ENST00000508802.1	chr4	38091552:38091738:38097549:38097711:38104619:38104778,	38097550	38097711	38097685	38097685	Frame_Shift_Del	A	-	p.E791fs
LIHC	TCGA-DD-A39Y-01	KLHL5	ENST00000508137.2	chr4	39064559:39064655:39077584:39077767:39082722:39082802,39046679:39046716:39077584:39077767:39082722:39082802,	39077585	39077767	39077649	39077649	Frame_Shift_Del	T	-	p.F151fs
LIHC	TCGA-DD-A39Y-01	KLHL5	ENST00000359687.2,ENST00000515612.1	chr4	39114639:39114852:39116778:39116950:39122629:39122825,39114639:39114852:39116778:39116950:39128313:39128415,	39116779	39116950	39116879	39116879	Frame_Shift_Del	G	-	p.G669fs
LIHC	TCGA-DD-A39Y-01	WDR19	ENST00000502389.1,ENST00000503697.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3,ENST00000506503.1	chr4	39187345:39187437:39188158:39188224:39191275:39191401,	39188159	39188224	39188181	39188181	Frame_Shift_Del	T	-	p.F41fs
LIHC	TCGA-DD-A39Y-01	RFC1	ENST00000381897.1	chr4	39308211:39308321:39310255:39310652:39313064:39313169,39308253:39308324:39310255:39310652:39313064:39313169,	39310256	39310652	39310612	39310612	Frame_Shift_Del	T	-	p.N510fs
LIHC	TCGA-DD-A39Y-01	RFC1	ENST00000504849.1,ENST00000381897.1,ENST00000512275.1,ENST00000418436.1,ENST00000349703.2	chr4	39343964:39344087:39347020:39347096:39352967:39353096,	39347021	39347096	39347041	39347041	Frame_Shift_Del	T	-	p.K63fs
LIHC	TCGA-DD-A39Y-01	UGDH	ENST00000501493.2,ENST00000316423.6,ENST00000506179.1,ENST00000507089.1	chr4	39501530:39501873:39505494:39505605:39506036:39506128,	39505495	39505605	39505575	39505575	Frame_Shift_Del	T	-	p.M432fs
LIHC	TCGA-DD-A39Y-01	UGDH	ENST00000515021.1,ENST00000316423.6,ENST00000506179.1,ENST00000507089.1	chr4	39512130:39512170:39512280:39512481:39515702:39515800,	39512281	39512481	39512390	39512390	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A39Y-01	UBE2K	ENST00000295963.6,ENST00000510934.1,ENST00000445950.2	chr4	39699758:39699922:39739039:39739133:39747371:39747430,39699947:39700010:39739039:39739133:39747371:39747430,	39739040	39739133	39739124	39739124	Frame_Shift_Del	C	-	p.P50fs
LIHC	TCGA-DD-A39Y-01	UBE2K	ENST00000513231.1	chr4	39739039:39739133:39747371:39747430:39757276:39757359,39699947:39700010:39747371:39747430:39757276:39757359,	39747372	39747430	39747422	39747422	Frame_Shift_Del	C	-	p.P71fs
LIHC	TCGA-DD-A39Y-01	UBE2K	ENST00000438068.2,ENST00000513231.1,ENST00000503368.1,ENST00000261427.5,ENST00000510719.1	chr4	39776453:39776553:39779301:39779430:39779979:39780004,	39779302	39779430	39779309	39779309	Frame_Shift_Del	A	-	p.Q136fs
LIHC	TCGA-DD-A39Y-01	UBE2K	ENST00000438068.2,ENST00000513231.1,ENST00000503368.1,ENST00000261427.5,ENST00000510719.1	chr4	39776453:39776553:39779301:39779430:39779979:39780004,	39779302	39779430	39779392	39779392	Frame_Shift_Del	A	-	p.K165fs
LIHC	TCGA-DD-A39Y-01	PDS5A	ENST00000303538.8	chr4	39874605:39874764:39875908:39876032:39878612:39878773,	39875909	39876032	39876005	39876005	Frame_Shift_Del	T	-	p.K727fs
LIHC	TCGA-DD-A39Y-01	CHRNA9	ENST00000310169.2	chr4	40339302:40339381:40350898:40351431:40355995:40356111,	40350899	40351431	40351333	40351333	Frame_Shift_Del	A	-	p.E267fs
LIHC	TCGA-DD-A39Y-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000510871.1,ENST00000514014.1	chr4	40427428:40428160:40434667:40434879:40439787:40440814,40427428:40428160:40434667:40434879:40438457:40438661,	40434668	40434879	40434825	40434825	Frame_Shift_Del	G	-	p.P393fs
LIHC	TCGA-DD-A39Y-01	RBM47	ENST00000510871.1	chr4	40434725:40434879:40438457:40438902:40439787:40440814,	40438458	40438902	40438589	40438589	Frame_Shift_Del	C	-	p.G400fs
LIHC	TCGA-DD-A39Y-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000514014.1	chr4	40434725:40434879:40438457:40438664:40439787:40440814,	40438458	40438664	40438589	40438589	Frame_Shift_Del	C	-	p.G400fs
LIHC	TCGA-DD-A39Y-01	APBB2	ENST00000506352.1,ENST00000295974.8,ENST00000513140.1	chr4	40946881:40947090:41015599:41016415:41035252:41035321,40946881:40947087:41015599:41016415:41035252:41035321,	41015600	41016415	41016073	41016073	Frame_Shift_Del	T	-	p.N121fs
LIHC	TCGA-DD-A39Y-01	LIMCH1	ENST00000512946.1,ENST00000313860.7,ENST00000512820.1,ENST00000396595.3,ENST00000508466.1,ENST00000503057.1,ENST00000514096.1,ENST00000511496.1,ENST00000381753.4,ENST00000513024.1,ENST00000509277.1,ENST00000508501.1	chr4	41678398:41678479:41682022:41682115:41682971:41683076,	41682023	41682115	41682066	41682066	Frame_Shift_Del	A	-	p.E804fs
LIHC	TCGA-DD-A39Y-01	LIMCH1	ENST00000313860.7,ENST00000508466.1,ENST00000503057.1,ENST00000509277.1	chr4	41687726:41687847:41689856:41689934:41691543:41691652,	41689857	41689934	41689890	41689890	Frame_Shift_Del	T	-	p.P990fs
LIHC	TCGA-DD-A39Y-01	SLC30A9	ENST00000513699.1,ENST00000264451.7	chr4	42069101:42069209:42072542:42072708:42077673:42077803,	42072543	42072708	42072598	42072598	Frame_Shift_Del	G	-	p.M436fs
LIHC	TCGA-DD-A39Y-01	ATP8A1	ENST00000264449.10	chr4	42554571:42554627:42557984:42558057:42576635:42576724,	42557985	42558057	42557992	42557992	Frame_Shift_Del	T	-	p.N470fs
LIHC	TCGA-DD-A39Y-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42626552:42626651:42627630:42627730:42629011:42629126,	42627631	42627730	42627721	42627721	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A39Y-01	GUF1	ENST00000511493.1	chr4	44696428:44696530:44699424:44699461:44700560:44702696,	44699425	44699461	44699433	44699433	Frame_Shift_Del	C	-	p.A615fs
LIHC	TCGA-DD-A39Y-01	GUF1	ENST00000511493.1	chr4	44696428:44696530:44699424:44699461:44700560:44702696,	44699425	44699461	44699441	44699441	Frame_Shift_Del	A	-	p.K618fs
LIHC	TCGA-DD-A39Y-01	ATP10D	ENST00000273859.3	chr4	47548640:47548879:47556742:47556931:47559680:47560290,	47556743	47556931	47556846	47556846	Frame_Shift_Del	A	-	p.E580fs
LIHC	TCGA-DD-A39Y-01	NFXL1	ENST00000464756.2,ENST00000381538.3,ENST00000507131.1,ENST00000508115.1,ENST00000502448.1,ENST00000507489.1	chr4	47857075:47857180:47864862:47864932:47877143:47877310,	47864863	47864932	47864879	47864879	Frame_Shift_Del	T	-	p.N767fs
LIHC	TCGA-DD-A39Y-01	TXK	ENST00000264316.4,ENST00000510457.1	chr4	48091766:48091841:48096093:48096221:48097159:48097239,	48096094	48096221	48096183	48096183	Frame_Shift_Del	T	-	p.K207fs
LIHC	TCGA-DD-A39Y-01	SLAIN2	ENST00000506375.1,ENST00000264313.6	chr4	48371865:48372014:48379912:48380077:48381706:48381741,	48379913	48380077	48379944	48379944	Frame_Shift_Del	T	-	p.P190fs
LIHC	TCGA-DD-A39Y-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000513401.1,ENST00000514617.1,ENST00000507873.2	chr4	48541987:48542085:48542369:48542977:48544043:48544138,	48542370	48542977	48542652	48542652	Frame_Shift_Del	A	-	p.W2005fs
LIHC	TCGA-DD-A39Y-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000507711.1,ENST00000514617.1,ENST00000507873.2	chr4	48553510:48553595:48555231:48555400:48558994:48559135,	48555232	48555400	48555279	48555279	Frame_Shift_Del	G	-	p.P1463fs
LIHC	TCGA-DD-A39Y-01	OCIAD1	ENST00000396448.2	chr4	48851963:48852099:48853822:48854037:48862741:48862807,	48853823	48854037	48853885	48853885	Frame_Shift_Del	C	-	p.S147fs
LIHC	TCGA-DD-A39Y-01	OCIAD1	ENST00000444354.2,ENST00000506801.1,ENST00000425583.2	chr4	48851963:48852099:48853822:48853992:48859229:48859269,48851963:48852099:48853822:48853992:48862741:48862807,	48853823	48853992	48853885	48853885	Frame_Shift_Del	C	-	p.S147fs
LIHC	TCGA-DD-A39Y-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P230fs
LIHC	TCGA-DD-A39Y-01	OCIAD2	ENST00000381464.2,ENST00000508632.1,ENST00000514576.1,ENST00000273860.4	chr4	48896022:48896070:48899820:48899874:48906500:48906615,48896022:48896070:48899820:48899874:48901845:48901942,	48899821	48899874	48899863	48899863	Frame_Shift_Del	A	-	p.S59fs
LIHC	TCGA-DD-A39Y-01	OCIAD2	ENST00000510159.1	chr4	48899857:48899874:48901845:48901942:48906500:48906628,48899820:48899852:48901845:48901942:48906500:48906628,	48901846	48901942	48901922	48901922	Frame_Shift_Del	T	-	p.K29fs
LIHC	TCGA-DD-A39Y-01	CWH43	ENST00000513409.1,ENST00000226432.4	chr4	49000476:49000565:49005751:49006009:49009217:49009343,	49005752	49006009	49005844	49005844	Frame_Shift_Del	C	-	p.P299fs
LIHC	TCGA-DD-A39Y-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54319086:54319300:54324819:54324957:54325468:54325569,	54324820	54324957	54324933	54324933	Frame_Shift_Del	A	-	p.E538fs
LIHC	TCGA-DD-A39Y-01	CHIC2	ENST00000263921.3	chr4	54880229:54880286:54915121:54915277:54915417:54915472,	54915122	54915277	54915178	54915178	Frame_Shift_Del	A	-	p.C95fs
LIHC	TCGA-DD-A39Y-01	PDGFRA	ENST00000508170.1,ENST00000504461.1,ENST00000512522.1,ENST00000503856.1,ENST00000509490.1,ENST00000257290.5	chr4	55124923:55124984:55127261:55127579:55129833:55130094,	55127262	55127579	55127436	55127436	Frame_Shift_Del	A	-	p.E75fs
LIHC	TCGA-DD-A39Y-01	TMEM165	ENST00000381334.5	chr4	56269409:56269505:56277780:56278006:56283238:56283412,56262417:56262563:56277780:56278006:56283238:56283412,	56277781	56278006	56277887	56277887	Frame_Shift_Del	T	-	p.I105fs
LIHC	TCGA-DD-A39Y-01	CLOCK	ENST00000309964.4,ENST00000381322.1,ENST00000513440.1	chr4	56319220:56319296:56319843:56319991:56322063:56322170,	56319844	56319991	56319870	56319870	Frame_Shift_Del	A	-	p.F368fs
LIHC	TCGA-DD-A39Y-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000381322.1,ENST00000513440.1	chr4	56325314:56325428:56329851:56329972:56336883:56336973,	56329852	56329972	56329866	56329866	Frame_Shift_Del	G	-	p.P182fs
LIHC	TCGA-DD-A39Y-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56837435:56837574:56840911:56841135:56846308:56846461,	56840912	56841135	56840988	56840988	Frame_Shift_Del	T	-	p.R442fs
LIHC	TCGA-DD-A39Y-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56858099:56858251:56865467:56865583:56865656:56865811,	56865468	56865583	56865562	56865562	Frame_Shift_Del	A	-	p.K702fs
LIHC	TCGA-DD-A39Y-01	KIAA1211	ENST00000503618.1,ENST00000504228.1,ENST00000264229.6	chr4	57138569:57138658:57164379:57164515:57173700:57173731,	57164380	57164515	57164411	57164411	Frame_Shift_Del	T	-	p.F6fs
LIHC	TCGA-DD-A39Y-01	PAICS	ENST00000264221.2,ENST00000505164.1,ENST00000512576.1,ENST00000514888.1	chr4	57302427:57302494:57307828:57308026:57312860:57313039,	57307829	57308026	57307899	57307899	Frame_Shift_Del	A	-	p.G29fs
LIHC	TCGA-DD-A39Y-01	IGFBP7	ENST00000295666.4,ENST00000537922.1,ENST00000514062.1,ENST00000512512.1	chr4	57898706:57898718:57899360:57899477:57906989:57907099,	57899361	57899477	57899386	57899386	Frame_Shift_Del	T	-	p.K226fs
LIHC	TCGA-DD-A39Y-01	UBA6	ENST00000322244.5	chr4	68512441:68512509:68514785:68514929:68527906:68527973,	68514786	68514929	68514874	68514874	Frame_Shift_Del	A	-	p.L387fs
LIHC	TCGA-DD-A39Y-01	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69095165	69095165	Frame_Shift_Del	T	-	p.K252fs
LIHC	TCGA-DD-A39Y-01	YTHDC1	ENST00000355665.3,ENST00000579690.1,ENST00000344157.4	chr4	69195719:69195837:69195919:69196028:69197820:69197915,	69195920	69196028	69195927	69195927	Frame_Shift_Del	T	-	p.K408fs
LIHC	TCGA-DD-A39Y-01	UGT2A3	ENST00000251566.4	chr4	69796872:69796960:69798345:69798477:69811023:69811168,	69798346	69798477	69798467	69798467	Frame_Shift_Del	T	-	p.N292fs
LIHC	TCGA-DD-A39Y-01	UGT2B4	ENST00000502655.1,ENST00000381096.3	chr4	70359410:70359559:70360858:70361128:70391404:70391732,	70360859	70361128	70361035	70361035	Frame_Shift_Del	T	-	p.K182fs
LIHC	TCGA-DD-A39Y-01	SULT1B1	ENST00000512870.1	chr4	70620387:70620516:70620787:70620919:70626176:70626289,	70620788	70620919	70620845	70620845	Frame_Shift_Del	T	-	p.I31fs
LIHC	TCGA-DD-A39Y-01	SULT1E1	ENST00000226444.3	chr4	70713415:70713510:70715154:70715281:70719934:70720032,	70715155	70715281	70715180	70715180	Frame_Shift_Del	A	-	p.F157fs
LIHC	TCGA-DD-A39Y-01	HTN3	ENST00000533547.1,ENST00000529625.1,ENST00000530128.1,ENST00000381057.3	chr4	70894175:70894233:70896444:70896508:70897695:70897716,	70896445	70896508	70896464	70896464	Frame_Shift_Del	T	-	p.F4fs
LIHC	TCGA-DD-A39Y-01	RUFY3	ENST00000417478.2,ENST00000536664.1,ENST00000381006.3,ENST00000502653.1,ENST00000226328.4	chr4	71648807:71648900:71650512:71650596:71654522:71654690,	71650513	71650596	71650572	71650572	Frame_Shift_Del	A	-	p.L349fs
LIHC	TCGA-DD-A39Y-01	RUFY3	ENST00000504805.2	chr4	71655211:71655309:71659481:71659621:71660511:71660611,	71659482	71659621	71659569	71659569	Frame_Shift_Del	G	-	p.G469fs
LIHC	TCGA-DD-A39Y-01	RUFY3	ENST00000381006.3,ENST00000502653.1	chr4	71655211:71655309:71659501:71659621:71660511:71660611,	71659502	71659621	71659569	71659569	Frame_Shift_Del	G	-	p.G469fs
LIHC	TCGA-DD-A39Y-01	NPFFR2	ENST00000358749.3	chr4	72905090:72905130:72994301:72994636:73003756:73003856,	72994302	72994636	72994318	72994318	Frame_Shift_Del	A	-	p.K106fs
LIHC	TCGA-DD-A39Y-01	COX18	ENST00000510031.1	chr4	73930966:73931130:73933745:73933850:73935033:73935409,	73933746	73933850	73933756	73933756	Frame_Shift_Del	T	-	p.R142fs
LIHC	TCGA-DD-A39Y-01	COX18	ENST00000507544.2	chr4	73930966:73931130:73933745:73933846:73935033:73935409,	73933746	73933846	73933756	73933756	Frame_Shift_Del	T	-	p.R142fs
LIHC	TCGA-DD-A39Y-01	ANKRD17	ENST00000558247.1,ENST00000561029.1,ENST00000330838.6,ENST00000560372.1,ENST00000509867.2,ENST00000358602.4	chr4	73968191:73968264:73979508:73979625:73981537:73981633,	73979509	73979625	73979546	73979546	Frame_Shift_Del	T	-	p.N1455fs
LIHC	TCGA-DD-A39Y-01	ALB	ENST00000415165.2,ENST00000484992.1,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74280751:74280884:74281972:74282070:74283804:74283820,74280751:74280884:74281972:74282070:74283247:74283331,	74281973	74282070	74282022	74282022	Frame_Shift_Del	A	-	p.Q414fs
LIHC	TCGA-DD-A39Y-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283270	74283270	Frame_Shift_Del	A	-	p.K438fs
LIHC	TCGA-DD-A39Y-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74283982:74284028:74285223:74285356:74286808:74286910,74284016:74284028:74285223:74285356:74285970:74286038,	74285224	74285356	74285263	74285263	Frame_Shift_Del	A	-	p.T564fs
LIHC	TCGA-DD-A39Y-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74285333:74285356:74285970:74286038:74286808:74286910,	74285971	74286038	74285974	74285974	Frame_Shift_Del	A	-	p.K598fs
LIHC	TCGA-DD-A39Y-01	THAP6	ENST00000311638.3,ENST00000514480.1	chr4	76441981:76442189:76446945:76447071:76465068:76465169,76441981:76442189:76446945:76447071:76452169:76452424,	76446946	76447071	76446956	76446956	Frame_Shift_Del	A	-	p.E100fs
LIHC	TCGA-DD-A39Y-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76530705:76530818:76532366:76532545:76539438:76539633,	76532367	76532545	76532416	76532416	Frame_Shift_Del	G	-	p.R165fs
LIHC	TCGA-DD-A39Y-01	USO1	ENST00000264904.6,ENST00000514213.2	chr4	76711795:76711950:76714842:76715054:76720774:76720885,	76714843	76715054	76714960	76714960	Frame_Shift_Del	C	-	p.T455fs
LIHC	TCGA-DD-A39Y-01	PPEF2	ENST00000511880.3,ENST00000286719.7	chr4	76788465:76788572:76793177:76793320:76794279:76794465,	76793178	76793320	76793266	76793266	Frame_Shift_Del	C	-	p.A521fs
LIHC	TCGA-DD-A39Y-01	NAAA	ENST00000507956.1,ENST00000513045.1,ENST00000505594.1,ENST00000399497.3,ENST00000602782.1,ENST00000286733.4	chr4	76841890:76841953:76842103:76842276:76846887:76846964,	76842104	76842276	76842177	76842177	Frame_Shift_Del	G	-	p.R256fs
LIHC	TCGA-DD-A39Y-01	ART3	ENST00000355810.4,ENST00000341029.5,ENST00000513494.1,ENST00000349321.3	chr4	76997033:76997111:77002976:77003688:77018796:77018829,	77002977	77003688	77002992	77002992	Frame_Shift_Del	T	-	p.L29fs
LIHC	TCGA-DD-A39Y-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77304814:77304891:77305240:77305568:77305708:77305818,	77305241	77305568	77305435	77305435	Frame_Shift_Del	T	-	p.M179fs
LIHC	TCGA-DD-A39Y-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77305708:77305818:77317421:77317639:77324290:77324429,	77317422	77317639	77317620	77317620	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-DD-A39Y-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77661738	77661738	Frame_Shift_Del	T	-	p.G804fs
LIHC	TCGA-DD-A39Y-01	CCNI	ENST00000537948.1,ENST00000237654.4,ENST00000505609.1,ENST00000504697.1	chr4	77977217:77977255:77977401:77977476:77979659:77979788,	77977402	77977476	77977465	77977465	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-DD-A39Y-01	FRAS1	ENST00000502446.1,ENST00000264895.6,ENST00000325942.6,ENST00000264899.6	chr4	79173545:79173705:79176395:79176529:79186178:79186262,	79176396	79176529	79176479	79176479	Frame_Shift_Del	G	-	p.G185fs
LIHC	TCGA-DD-A39Y-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79385596:79385737:79387361:79387589:79391131:79391245,	79387362	79387589	79387583	79387583	Frame_Shift_Del	A	-	p.G2417fs
LIHC	TCGA-DD-A39Y-01	ANXA3	ENST00000508214.1,ENST00000503570.2,ENST00000264908.6,ENST00000514171.1,ENST00000512884.1	chr4	79500180:79500275:79503330:79503444:79507413:79507504,	79503331	79503444	79503370	79503370	Frame_Shift_Del	T	-	p.F80fs
LIHC	TCGA-DD-A39Y-01	PRKG2	ENST00000418486.2	chr4	82095946:82096113:82125740:82126214:82136089:82136218,	82125741	82126214	82125843	82125843	Frame_Shift_Del	C	-	p.G120fs
LIHC	TCGA-DD-A39Y-01	RASGEF1B	ENST00000335927.7	chr4	82369222:82369435:82377804:82377942:82380485:82380668,	82377805	82377942	82377919	82377919	Frame_Shift_Del	G	-	p.P108fs
LIHC	TCGA-DD-A39Y-01	HNRNPDL	ENST00000502762.1,ENST00000602300.1,ENST00000295470.5,ENST00000507721.1,ENST00000514511.1	chr4	83347189:83347282:83347615:83347786:83348342:83348344,	83347616	83347786	83347665	83347665	Frame_Shift_Del	C	-	p.G381fs
LIHC	TCGA-DD-A39Y-01	HNRNPDL	ENST00000502762.1,ENST00000602300.1,ENST00000295470.5,ENST00000514511.1	chr4	83347615:83347786:83348342:83348457:83348585:83348717,	83348343	83348457	83348398	83348398	Frame_Shift_Del	T	-	p.K322fs
LIHC	TCGA-DD-A39Y-01	ENOPH1	ENST00000273920.3,ENST00000509635.1	chr4	83369072:83369174:83372195:83372398:83375874:83376007,	83372196	83372398	83372391	83372391	Frame_Shift_Del	A	-	p.K128fs
LIHC	TCGA-DD-A39Y-01	TMEM150C	ENST00000508701.1,ENST00000454948.3,ENST00000449862.2,ENST00000515780.2	chr4	83424047:83424080:83424211:83424265:83425730:83425820,	83424212	83424265	83424233	83424233	Frame_Shift_Del	A	-	p.L38fs
LIHC	TCGA-DD-A39Y-01	SEC31A	ENST00000443462.2,ENST00000513858.1,ENST00000432794.1,ENST00000348405.4,ENST00000311785.7,ENST00000500777.2,ENST00000509142.1,ENST00000326950.5,ENST00000505984.1,ENST00000448323.1,ENST00000508502.1,ENST00000355196.2,ENST00000508479.1,ENST00000395310.2	chr4	83766353:83766446:83769956:83770130:83772583:83772757,83765538:83765662:83769956:83770130:83772583:83772757,	83769957	83770130	83770055	83770055	Frame_Shift_Del	T	-	p.I802fs
LIHC	TCGA-DD-A39Y-01	LIN54	ENST00000510557.1,ENST00000446851.2,ENST00000508171.1,ENST00000506560.1,ENST00000442461.2,ENST00000340417.3,ENST00000505397.1,ENST00000395282.2,ENST00000395283.2,ENST00000510877.1	chr4	83852095:83852298:83857133:83857271:83857431:83857534,	83857134	83857271	83857224	83857224	Frame_Shift_Del	T	-	p.K585fs
LIHC	TCGA-DD-A39Y-01	COPS4	ENST00000509093.1,ENST00000509317.1,ENST00000511653.1,ENST00000264389.2	chr4	83978410:83978561:83984228:83984399:83987590:83987706,	83984229	83984399	83984379	83984379	Frame_Shift_Del	A	-	p.Q289fs
LIHC	TCGA-DD-A39Y-01	COQ2	ENST00000311469.4,ENST00000503915.1,ENST00000439031.2,ENST00000311461.7	chr4	84188738:84188927:84191012:84191146:84193239:84193320,	84191013	84191146	84191060	84191060	Frame_Shift_Del	A	-	p.S289fs
LIHC	TCGA-DD-A39Y-01	HPSE	ENST00000509906.1	chr4	84223302:84223421:84229997:84230104:84230554:84230648,	84229998	84230104	84230059	84230059	Frame_Shift_Del	T	-	p.T344fs
LIHC	TCGA-DD-A39Y-01	HPSE	ENST00000513463.1	chr4	84231183:84231231:84231874:84232043:84234266:84234440,84231183:84231231:84231874:84232043:84240496:84240622,	84231875	84232043	84231938	84231938	Frame_Shift_Del	T	-	p.N260fs
LIHC	TCGA-DD-A39Y-01	HELQ	ENST00000508591.1,ENST00000295488.3	chr4	84367166:84367239:84367987:84368188:84369935:84370114,	84367988	84368188	84368039	84368039	Frame_Shift_Del	G	-	p.S447fs
LIHC	TCGA-DD-A39Y-01	WDFY3	ENST00000295888.4,ENST00000322366.6,ENST00000425179.2	chr4	85599320:85599432:85600071:85600395:85603526:85603623,	85600072	85600395	85600384	85600384	Frame_Shift_Del	G	-	p.Q3262fs
LIHC	TCGA-DD-A39Y-01	ARHGAP24	ENST00000506421.1,ENST00000503995.1	chr4	86396638:86396712:86491674:86491874:86643037:86643125,	86491675	86491874	86491826	86491826	Frame_Shift_Del	G	-	p.K44fs
LIHC	TCGA-DD-A39Y-01	ARHGAP24	ENST00000502537.1,ENST00000514229.1,ENST00000395184.1,ENST00000503995.1,ENST00000395183.2	chr4	86851425:86852195:86863218:86863426:86893188:86893321,86844886:86844923:86863218:86863426:86893188:86893321,	86863219	86863426	86863347	86863347	Frame_Shift_Del	T	-	p.F174fs
LIHC	TCGA-DD-A39Y-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6,ENST00000502971.1,ENST00000507902.1	chr4	87593517:87593696:87607862:87607928:87610157:87610214,	87607863	87607928	87607897	87607897	Frame_Shift_Del	G	-	p.W110fs
LIHC	TCGA-DD-A39Y-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87656746:87656899:87662786:87662969:87666118:87666281,	87662787	87662969	87662803	87662803	Frame_Shift_Del	C	-	p.T774fs
LIHC	TCGA-DD-A39Y-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87656746:87656899:87662786:87662969:87666118:87666281,	87662787	87662969	87662834	87662834	Frame_Shift_Del	C	-	p.H784fs
LIHC	TCGA-DD-A39Y-01	AFF1	ENST00000514970.1,ENST00000511722.1,ENST00000395146.4,ENST00000544085.1,ENST00000307808.6,ENST00000503477.1	chr4	88012944:88012981:88016066:88016121:88026779:88026834,	88016067	88016121	88016086	88016086	Frame_Shift_Del	A	-	p.S409fs
LIHC	TCGA-DD-A39Y-01	NUDT9	ENST00000512216.1,ENST00000473942.1,ENST00000302174.4	chr4	88359428:88359524:88362980:88363067:88370293:88370405,	88362981	88363067	88362995	88362995	Frame_Shift_Del	G	-	p.R103fs
LIHC	TCGA-DD-A39Y-01	SPARCL1	ENST00000282470.6,ENST00000503414.1,ENST00000418378.1	chr4	88394569:88394955:88400581:88400730:88401523:88401672,	88400582	88400730	88400586	88400586	Frame_Shift_Del	T	-	p.K654fs
LIHC	TCGA-DD-A39Y-01	SPARCL1	ENST00000541496.1	chr4	88416164:88416279:88420672:88420737:88450196:88450244,88416132:88416295:88420672:88420737:88450196:88450244,	88420673	88420737	88420715	88420715	Frame_Shift_Del	C	-	p.G4fs
LIHC	TCGA-DD-A39Y-01	PKD2	ENST00000237596.2	chr4	88967793:88968022:88973142:88973310:88977237:88977419,	88973143	88973310	88973293	88973293	Frame_Shift_Del	T	-	p.F568fs
LIHC	TCGA-DD-A39Y-01	PKD2	ENST00000508588.1,ENST00000502363.1,ENST00000237596.2	chr4	88977237:88977419:88979134:88979255:88983057:88983156,	88979135	88979255	88979226	88979226	Frame_Shift_Del	T	-	p.F664fs
LIHC	TCGA-DD-A39Y-01	ABCG2	ENST00000505480.1	chr4	89053727:89053787:89060944:89061166:89079537:89080064,89053727:89053787:89060944:89061166:89079728:89079823,	89060945	89061166	89061121	89061121	Frame_Shift_Del	A	-	p.F9fs
LIHC	TCGA-DD-A39Y-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326098	89326098	Frame_Shift_Del	A	-	p.E388fs
LIHC	TCGA-DD-A39Y-01	HERC6	ENST00000264346.7	chr4	89345011:89345125:89345746:89345854:89349731:89349893,	89345747	89345854	89345760	89345760	Frame_Shift_Del	C	-	p.T614fs
LIHC	TCGA-DD-A39Y-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90856153	90856153	Frame_Shift_Del	A	-	p.Q441fs
LIHC	TCGA-DD-A39Y-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90856162	90856162	Frame_Shift_Del	T	-	p.V444fs
LIHC	TCGA-DD-A39Y-01	SMARCAD1	ENST00000457823.2,ENST00000359052.4,ENST00000354268.4,ENST00000510105.1	chr4	95129496:95129735:95147269:95147447:95155104:95155273,	95147270	95147447	95147387	95147387	Frame_Shift_Del	C	-	p.S103fs
LIHC	TCGA-DD-A39Y-01	RAP1GDS1	ENST00000408927.3,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000408900.3	chr4	99313102:99313231:99325627:99325753:99337895:99338039,	99325628	99325753	99325748	99325748	Frame_Shift_Del	A	-	p.E253fs
LIHC	TCGA-DD-A39Y-01	EIF4E	ENST00000515638.1,ENST00000450253.2,ENST00000505194.1,ENST00000280892.6,ENST00000504432.1	chr4	99802160:99802293:99806072:99806212:99808229:99808318,	99806073	99806212	99806186	99806186	Frame_Shift_Del	A	-	p.F142fs
LIHC	TCGA-DD-A39Y-01	DNAJB14	ENST00000426476.1,ENST00000471738.1	chr4	100844196:100844342:100851606:100851778:100867595:100867715,100845916:100845972:100851606:100851778:100867595:100867715,	100851607	100851778	100851754	100851754	Frame_Shift_Del	T	-	p.N53fs
LIHC	TCGA-DD-A39Y-01	EMCN	ENST00000305864.3,ENST00000506323.1,ENST00000502569.1,ENST00000502327.1,ENST00000511970.1	chr4	101396194:101396266:101401073:101401196:101439007:101439155,	101401074	101401196	101401109	101401109	Frame_Shift_Del	T	-	p.N51fs
LIHC	TCGA-DD-A39Y-01	MANBA	ENST00000226578.4	chr4	103612036:103612114:103635594:103635718:103644027:103644198,103611752:103611928:103635594:103635718:103644027:103644198,	103635595	103635718	103635631	103635631	Frame_Shift_Del	A	-	p.C213fs
LIHC	TCGA-DD-A39Y-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104044027:104044246:104053849:104054053:104054851:104055049,	104053850	104054053	104053934	104053934	Frame_Shift_Del	A	-	p.F2280fs
LIHC	TCGA-DD-A39Y-01	CFI	ENST00000512148.1	chr4	110670654:110670758:110673623:110673659:110681425:110681536,	110673624	110673659	110673644	110673644	Frame_Shift_Del	A	-	p.L307fs
LIHC	TCGA-DD-A39Y-01	EGF	ENST00000503392.1,ENST00000265171.5,ENST00000509793.1	chr4	110885556:110885693:110890126:110890275:110895858:110895963,	110890127	110890275	110890197	110890197	Frame_Shift_Del	T	-	p.L549fs
LIHC	TCGA-DD-A39Y-01	ELOVL6	ENST00000302274.3,ENST00000503885.1,ENST00000506625.1,ENST00000394607.3	chr4	110980805:110980910:111026652:111026784:111119402:111119522,	111026653	111026784	111026703	111026703	Frame_Shift_Del	A	-	p.F57fs
LIHC	TCGA-DD-A39Y-01	ENPEP	ENST00000265162.5	chr4	111441370:111441522:111452353:111452433:111463906:111464043,	111452354	111452433	111452425	111452425	Frame_Shift_Del	A	-	p.E600fs
LIHC	TCGA-DD-A39Y-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114277701	114277701	Frame_Shift_Del	G	-	p.G2643fs
LIHC	TCGA-DD-A39Y-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824686	114824686	Frame_Shift_Del	A	-	p.Y182fs
LIHC	TCGA-DD-A39Y-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120180974:120181080:120181661:120181808:120182869:120183019,	120181662	120181808	120181682	120181682	Frame_Shift_Del	A	-	p.I232fs
LIHC	TCGA-DD-A39Y-01	USP53	ENST00000274030.6,ENST00000450251.1	chr4	120181661:120181808:120182869:120183019:120188474:120188590,	120182870	120183019	120182993	120182993	Frame_Shift_Del	T	-	p.F317fs
LIHC	TCGA-DD-A39Y-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000354960.3	chr4	120419695:120419893:120422324:120422408:120423735:120423810,	120422325	120422408	120422378	120422378	Frame_Shift_Del	T	-	p.I813fs
LIHC	TCGA-DD-A39Y-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000503412.1,ENST00000354960.3	chr4	120422324:120422408:120423735:120423810:120425690:120425754,	120423736	120423810	120423757	120423757	Frame_Shift_Del	T	-	p.K795fs
LIHC	TCGA-DD-A39Y-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000503412.1,ENST00000354960.3	chr4	120422324:120422408:120423735:120423810:120425690:120425754,	120423736	120423810	120423781	120423781	Frame_Shift_Del	A	-	p.F787fs
LIHC	TCGA-DD-A39Y-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000508914.1,ENST00000354960.3	chr4	120473704:120473792:120474792:120474901:120481450:120481518,	120474793	120474901	120474802	120474802	Frame_Shift_Del	A	-	p.F433fs
LIHC	TCGA-DD-A39Y-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000508914.1,ENST00000354960.3	chr4	120473704:120473792:120474792:120474901:120481450:120481518,	120474793	120474901	120474887	120474887	Frame_Shift_Del	T	-	p.N405fs
LIHC	TCGA-DD-A39Y-01	PDE5A	ENST00000394439.1,ENST00000420633.1	chr4	120517680:120517767:120527863:120528452:120548304:120548788,120517680:120517767:120527863:120528452:120549149:120549202,	120527864	120528452	120528008	120528008	Frame_Shift_Del	A	-	p.F199fs
LIHC	TCGA-DD-A39Y-01	ANXA5	ENST00000509648.1,ENST00000515717.1,ENST00000296511.5,ENST00000506395.1,ENST00000515017.1,ENST00000501272.2	chr4	122591108:122591167:122592701:122592797:122593687:122593713,	122592702	122592797	122592748	122592748	Frame_Shift_Del	A	-	p.I225fs
LIHC	TCGA-DD-A39Y-01	EXOSC9	ENST00000379663.3,ENST00000512454.1,ENST00000243498.5,ENST00000509980.1	chr4	122731140:122731254:122732737:122732826:122734388:122734448,	122732738	122732826	122732753	122732753	Frame_Shift_Del	A	-	p.K236fs
LIHC	TCGA-DD-A39Y-01	EXOSC9	ENST00000379663.3,ENST00000512454.1,ENST00000243498.5,ENST00000509980.1	chr4	122731140:122731254:122732737:122732826:122734388:122734448,	122732738	122732826	122732803	122732803	Frame_Shift_Del	T	-	p.A252fs
LIHC	TCGA-DD-A39Y-01	EXOSC9	ENST00000503236.1,ENST00000512454.1,ENST00000243498.5	chr4	122735020:122735202:122737523:122737602:122737926:122737995,	122737524	122737602	122737569	122737569	Frame_Shift_Del	T	-	p.I385fs
LIHC	TCGA-DD-A39Y-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122760785:122760851:122765081:122765156:122766658:122766851,	122765082	122765156	122765117	122765117	Frame_Shift_Del	A	-	p.S424fs
LIHC	TCGA-DD-A39Y-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122760785:122760851:122765081:122765156:122766658:122766851,	122765082	122765156	122765119	122765119	Frame_Shift_Del	T	-	p.N423fs
LIHC	TCGA-DD-A39Y-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000419325.1,ENST00000388738.3	chr4	123195497:123195591:123197126:123197177:123200929:123201136,	123197127	123197177	123197136	123197136	Frame_Shift_Del	T	-	p.D2850fs
LIHC	TCGA-DD-A39Y-01	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123264564:123264765:123265536:123265716:123267777:123267915,	123265537	123265716	123265592	123265592	Frame_Shift_Del	A	-	p.I4203fs
LIHC	TCGA-DD-A39Y-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123868387:123868643:123900386:123900541:123949340:123949550,	123900387	123900541	123900413	123900413	Frame_Shift_Del	A	-	p.K582fs
LIHC	TCGA-DD-A39Y-01	FAT4	ENST00000394329.3	chr4	126369615:126373965:126384717:126384822:126389666:126389974,	126384718	126384822	126384758	126384758	Frame_Shift_Del	C	-	p.N3945fs
LIHC	TCGA-DD-A39Y-01	INTU	ENST00000503626.1,ENST00000503952.1,ENST00000335251.6,ENST00000296461.5	chr4	128577790:128577876:128584535:128584739:128590190:128590309,	128584536	128584739	128584596	128584596	Frame_Shift_Del	A	-	p.K278fs
LIHC	TCGA-DD-A39Y-01	PLK4	ENST00000270861.5,ENST00000514379.1,ENST00000515069.1,ENST00000513090.1,ENST00000507249.1	chr4	128813519:128813669:128814439:128814573:128814667:128814759,	128814440	128814573	128814507	128814507	Frame_Shift_Del	A	-	p.L752fs
LIHC	TCGA-DD-A39Y-01	MFSD8	ENST00000541133.1	chr4	128854139:128854248:128859937:128859993:128861007:128861152,128854139:128854248:128859937:128859993:128863199:128863313,	128859938	128859993	128859945	128859945	Frame_Shift_Del	A	-	p.F249fs
LIHC	TCGA-DD-A39Y-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000508819.1,ENST00000354456.3	chr4	129035724:129035897:129042980:129043343:129083348:129083472,	129042981	129043343	129043162	129043162	Frame_Shift_Del	T	-	p.I448fs
LIHC	TCGA-DD-A39Y-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000264584.5,ENST00000507259.1,ENST00000354456.3	chr4	129099666:129099797:129100560:129100667:129120593:129120754,	129100561	129100667	129100622	129100622	Frame_Shift_Del	G	-	p.W653fs
LIHC	TCGA-DD-A39Y-01	LARP1B	ENST00000503725.1,ENST00000508648.1	chr4	129128410:129128538:129131010:129131148:129141509:129141595,	129131011	129131148	129131037	129131037	Frame_Shift_Del	A	-	p.R858fs
LIHC	TCGA-DD-A39Y-01	SCLT1	ENST00000281142.5,ENST00000502495.1	chr4	129880754:129880932:129886381:129886473:129891532:129891623,	129886382	129886473	129886393	129886393	Frame_Shift_Del	T	-	p.Q286fs
LIHC	TCGA-DD-A39Y-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138450971	138450971	Frame_Shift_Del	C	-	p.D758fs
LIHC	TCGA-DD-A39Y-01	SLC7A11	ENST00000280612.5	chr4	139140419:139140519:139144352:139144478:139153420:139153536,	139144353	139144478	139144421	139144421	Frame_Shift_Del	A	-	p.F193fs
LIHC	TCGA-DD-A39Y-01	SLC7A11	ENST00000280612.5	chr4	139140419:139140519:139144352:139144478:139153420:139153536,	139144353	139144478	139144460	139144460	Frame_Shift_Del	T	-	p.N180fs
LIHC	TCGA-DD-A39Y-01	ELF2	ENST00000379550.1,ENST00000265495.4,ENST00000358635.3,ENST00000394235.2,ENST00000510408.1	chr4	139981754:139981828:139983018:139983211:139988837:139988924,	139983019	139983211	139983038	139983038	Frame_Shift_Del	T	-	p.T251fs
LIHC	TCGA-DD-A39Y-01	ELF2	ENST00000379550.1,ENST00000265495.4,ENST00000358635.3,ENST00000394235.2,ENST00000510408.1	chr4	139981754:139981828:139983018:139983211:139988837:139988924,	139983019	139983211	139983120	139983120	Frame_Shift_Del	T	-	p.K223fs
LIHC	TCGA-DD-A39Y-01	NAA15	ENST00000296543.5	chr4	140297530:140297627:140299909:140300008:140305985:140306132,	140299910	140300008	140299943	140299943	Frame_Shift_Del	G	-	p.R697fs
LIHC	TCGA-DD-A39Y-01	SETD7	ENST00000506866.2,ENST00000274031.3	chr4	140444507:140444589:140450184:140450374:140454318:140454520,	140450185	140450374	140450233	140450233	Frame_Shift_Del	G	-	p.L172fs
LIHC	TCGA-DD-A39Y-01	SCOC	ENST00000394201.4,ENST00000394205.3,ENST00000512749.1,ENST00000608372.1,ENST00000506322.1,ENST00000502535.1,ENST00000338517.4,ENST00000394203.3,ENST00000510586.1	chr4	141300274:141300346:141300722:141300806:141302115:141302280,	141300723	141300806	141300756	141300756	Frame_Shift_Del	A	-	p.E59fs
LIHC	TCGA-DD-A39Y-01	TBC1D9	ENST00000442267.2	chr4	141580741:141580859:141583046:141583261:141590070:141590221,	141583047	141583261	141583074	141583074	Frame_Shift_Del	A	-	p.F592fs
LIHC	TCGA-DD-A39Y-01	INPP4B	ENST00000308502.4,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000514525.1,ENST00000508116.1,ENST00000511838.1,ENST00000510812.1,ENST00000262992.4	chr4	143066992:143067149:143081510:143081714:143094784:143094962,	143081511	143081714	143081569	143081569	Frame_Shift_Del	G	-	p.P502fs
LIHC	TCGA-DD-A39Y-01	INPP4B	ENST00000308502.4,ENST00000506297.1,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000514525.1,ENST00000508116.1,ENST00000511838.1,ENST00000510812.1,ENST00000262992.4	chr4	143159016:143159164:143181644:143181717:143191815:143191927,	143181645	143181717	143181653	143181653	Frame_Shift_Del	A	-	p.L227fs
LIHC	TCGA-DD-A39Y-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135825	144135825	Frame_Shift_Del	T	-	p.V899fs
LIHC	TCGA-DD-A39Y-01	ZNF827	ENST00000379448.4,ENST00000508784.1,ENST00000513320.1	chr4	146791452:146791630:146806829:146807310:146813394:146813561,	146806830	146807310	146807034	146807034	Frame_Shift_Del	C	-	p.A515fs
LIHC	TCGA-DD-A39Y-01	SLC10A7	ENST00000264986.3,ENST00000335472.7,ENST00000432059.2,ENST00000507030.1,ENST00000394062.3	chr4	147215081:147215247:147227077:147227161:147247112:147247148,	147227078	147227161	147227111	147227111	Frame_Shift_Del	A	-	p.F161fs
LIHC	TCGA-DD-A39Y-01	SLC10A7	ENST00000264986.3,ENST00000335472.7,ENST00000432059.2,ENST00000507030.1,ENST00000394062.3	chr4	147215081:147215247:147227077:147227161:147247112:147247148,	147227078	147227161	147227122	147227122	Frame_Shift_Del	A	-	p.S158fs
LIHC	TCGA-DD-A39Y-01	EDNRA	ENST00000510697.1	chr4	148406985:148407253:148441002:148441130:148453657:148453811,148402083:148402528:148441002:148441130:148453657:148453811,148406985:148407253:148441002:148441130:148457028:148457181,	148441003	148441130	148441089	148441089	Frame_Shift_Del	G	-	p.V169fs
LIHC	TCGA-DD-A39Y-01	EDNRA	ENST00000339690.5,ENST00000510697.1,ENST00000503721.1,ENST00000506066.1,ENST00000511804.1,ENST00000324300.5,ENST00000358556.4	chr4	148457028:148457181:148460968:148461102:148461528:148461637,	148460969	148461102	148460983	148460983	Frame_Shift_Del	A	-	p.A305fs
LIHC	TCGA-DD-A39Y-01	EDNRA	ENST00000339690.5,ENST00000510697.1,ENST00000503721.1,ENST00000506066.1,ENST00000511804.1,ENST00000324300.5,ENST00000358556.4	chr4	148457028:148457181:148460968:148461102:148461528:148461637,	148460969	148461102	148461009	148461009	Frame_Shift_Del	T	-	p.I314fs
LIHC	TCGA-DD-A39Y-01	TMEM184C	ENST00000296582.3	chr4	148552543:148552656:148554053:148554153:148554915:148555074,	148554054	148554153	148554081	148554081	Frame_Shift_Del	A	-	p.V269fs
LIHC	TCGA-DD-A39Y-01	ARHGAP10	ENST00000336498.3	chr4	148768301:148768373:148778703:148778805:148785996:148786107,	148778704	148778805	148778778	148778778	Frame_Shift_Del	A	-	p.A153fs
LIHC	TCGA-DD-A39Y-01	ARHGAP10	ENST00000506054.1,ENST00000336498.3,ENST00000506020.1	chr4	148968042:148968202:148984298:148984451:148985566:148985658,	148984299	148984451	148984411	148984411	Frame_Shift_Del	T	-	p.F714fs
LIHC	TCGA-DD-A39Y-01	DCLK2	ENST00000411937.2,ENST00000506325.1,ENST00000302176.8,ENST00000296550.7	chr4	151023629:151023964:151114289:151114392:151119153:151119255,	151114290	151114392	151114308	151114308	Frame_Shift_Del	T	-	p.F260fs
LIHC	TCGA-DD-A39Y-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151769969:151770150:151770573:151770727:151771875:151772054,	151770574	151770727	151770594	151770594	Frame_Shift_Del	A	-	p.S1380fs
LIHC	TCGA-DD-A39Y-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151792496:151792605:151793814:151793907:151814203:151814301,	151793815	151793907	151793833	151793833	Frame_Shift_Del	A	-	p.L747fs
LIHC	TCGA-DD-A39Y-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151793814:151793907:151814203:151814301:151817545:151817608,	151814204	151814301	151814261	151814261	Frame_Shift_Del	A	-	p.L703fs
LIHC	TCGA-DD-A39Y-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151829485:151829619:151829811:151830009:151835346:151835493,	151829812	151830009	151829842	151829842	Frame_Shift_Del	A	-	p.F443fs
LIHC	TCGA-DD-A39Y-01	RPS3A	ENST00000512690.1	chr4	152024210:152024231:152025336:152025438:152025623:152025642,	152025337	152025438	152025347	152025347	Frame_Shift_Del	A	-	p.G157fs
LIHC	TCGA-DD-A39Y-01	RPS3A	ENST00000507327.1,ENST00000510993.1,ENST00000514682.1,ENST00000274065.4,ENST00000509736.1,ENST00000515792.1,ENST00000506126.1	chr4	152024210:152024231:152025328:152025438:152025623:152025642,	152025329	152025438	152025347	152025347	Frame_Shift_Del	A	-	p.G157fs
LIHC	TCGA-DD-A39Y-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152053482:152053535:152054185:152054388:152056225:152056284,	152054186	152054388	152054240	152054240	Frame_Shift_Del	G	-	p.L599fs
LIHC	TCGA-DD-A39Y-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000478503.2,ENST00000514152.1	chr4	152065371:152065440:152069073:152069338:152070651:152070713,152065061:152065202:152069073:152069338:152070651:152070713,	152069074	152069338	152069285	152069285	Frame_Shift_Del	G	-	p.P344fs
LIHC	TCGA-DD-A39Y-01	FAM160A1	ENST00000435205.1,ENST00000505231.1	chr4	152487289:152487516:152498601:152499228:152507792:152507951,	152498602	152499228	152498628	152498628	Frame_Shift_Del	C	-	p.D44fs
LIHC	TCGA-DD-A39Y-01	TRIM2	ENST00000441616.1	chr4	154074269:154074422:154191489:154191671:154197044:154197282,154073644:154073764:154191489:154191671:154197044:154197282,	154191490	154191671	154191516	154191516	Frame_Shift_Del	C	-	p.G20fs
LIHC	TCGA-DD-A39Y-01	TRIM2	ENST00000494872.1,ENST00000479711.1,ENST00000338700.5	chr4	154178561:154178759:154191486:154191671:154197044:154197282,154125617:154125712:154191486:154191671:154197044:154197282,	154191487	154191671	154191516	154191516	Frame_Shift_Del	C	-	p.G20fs
LIHC	TCGA-DD-A39Y-01	RNF175	ENST00000513656.1	chr4	154644551:154644610:154649358:154649513:154666820:154666879,154644551:154644610:154649358:154649513:154680948:154681025,154644551:154644610:154649358:154649513:154669796:154669901,154644551:154644610:154649358:154649513:154672589:154672599,	154649359	154649513	154649378	154649378	Frame_Shift_Del	G	-	p.L128fs
LIHC	TCGA-DD-A39Y-01	PLRG1	ENST00000499023.2,ENST00000393905.2,ENST00000504341.1	chr4	155466987:155467075:155467274:155467365:155468162:155468216,	155467275	155467365	155467363	155467363	Frame_Shift_Del	C	-	p.V106fs
LIHC	TCGA-DD-A39Y-01	FGG	ENST00000404648.3,ENST00000405164.1,ENST00000492082.1	chr4	155525324:155525506:155526048:155526218:155527856:155527974,	155526049	155526218	155526154	155526154	Frame_Shift_Del	C	-	p.W398fs
LIHC	TCGA-DD-A39Y-01	MAP9	ENST00000433024.1,ENST00000311277.4,ENST00000515654.1	chr4	156276222:156276312:156276867:156277036:156278600:156278671,	156276868	156277036	156276929	156276929	Frame_Shift_Del	G	-	p.P410fs
LIHC	TCGA-DD-A39Y-01	GLRB	ENST00000510970.1,ENST00000541722.1,ENST00000509282.1,ENST00000264428.4,ENST00000506411.1	chr4	158057620:158057850:158057955:158058038:158059960:158060024,	158057956	158058038	158057983	158057983	Frame_Shift_Del	G	-	p.L185fs
LIHC	TCGA-DD-A39Y-01	RXFP1	ENST00000448688.2,ENST00000423548.1,ENST00000342048.5,ENST00000343542.5,ENST00000307765.5,ENST00000460056.2,ENST00000471616.1	chr4	159493849:159493987:159514552:159514651:159520477:159520583,	159514553	159514651	159514606	159514606	Frame_Shift_Del	A	-	p.K81fs
LIHC	TCGA-DD-A39Y-01	RXFP1	ENST00000448688.2,ENST00000342048.5,ENST00000343542.5,ENST00000307765.5,ENST00000460056.2,ENST00000471616.1,ENST00000470033.1	chr4	159533281:159533353:159533442:159533514:159538282:159538357,	159533443	159533514	159533486	159533486	Frame_Shift_Del	T	-	p.F218fs
LIHC	TCGA-DD-A39Y-01	ETFDH	ENST00000511912.1	chr4	159593556:159593642:159601618:159601759:159603346:159603576,	159601619	159601759	159601651	159601651	Frame_Shift_Del	A	-	p.K23fs
LIHC	TCGA-DD-A39Y-01	FNIP2	ENST00000504715.1,ENST00000264433.6,ENST00000512986.1,ENST00000379346.3	chr4	159772472:159772602:159780208:159780410:159780729:159780799,	159780209	159780410	159780300	159780300	Frame_Shift_Del	T	-	p.F317fs
LIHC	TCGA-DD-A39Y-01	FNIP2	ENST00000504715.1,ENST00000264433.6,ENST00000512986.1,ENST00000379346.3	chr4	159772472:159772602:159780208:159780410:159780729:159780799,	159780209	159780410	159780335	159780335	Frame_Shift_Del	T	-	p.N328fs
LIHC	TCGA-DD-A39Y-01	RAPGEF2	ENST00000264431.4	chr4	160264445:160264556:160265187:160265211:160266257:160266481,	160265188	160265211	160265209	160265209	Frame_Shift_Del	G	-	p.L931fs
LIHC	TCGA-DD-A39Y-01	NAF1	ENST00000274054.2	chr4	164050330:164050500:164054305:164054408:164058350:164058402,	164054306	164054408	164054331	164054331	Frame_Shift_Del	T	-	p.K336fs
LIHC	TCGA-DD-A39Y-01	TMA16	ENST00000508268.1,ENST00000513134.1,ENST00000358572.5,ENST00000513272.1	chr4	164415859:164415956:164428184:164428297:164433973:164434011,	164428185	164428297	164428285	164428285	Frame_Shift_Del	A	-	p.E35fs
LIHC	TCGA-DD-A39Y-01	DDX60	ENST00000393743.3	chr4	169206543:169206649:169208198:169208354:169209324:169209466,	169208199	169208354	169208329	169208329	Frame_Shift_Del	G	-	p.T403fs
LIHC	TCGA-DD-A39Y-01	DDX60L	ENST00000505890.1,ENST00000504793.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169341411:169341531:169342910:169343060:169343674:169343739,	169342911	169343060	169342991	169342991	Frame_Shift_Del	T	-	p.T772fs
LIHC	TCGA-DD-A39Y-01	CBR4	ENST00000306193.3	chr4	169815720:169815916:169923221:169923356:169927905:169927939,169908740:169911479:169923221:169923356:169927905:169927939,	169923222	169923356	169923315	169923315	Frame_Shift_Del	A	-	p.Y148fs
LIHC	TCGA-DD-A39Y-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170051196:170051307:170057468:170057771:170076630:170076726,	170057469	170057771	170057551	170057551	Frame_Shift_Del	G	-	p.P329fs
LIHC	TCGA-DD-A39Y-01	NEK1	ENST00000507142.1,ENST00000439128.2	chr4	170458959:170459062:170476870:170477002:170477082:170477186,	170476871	170477002	170476917	170476917	Frame_Shift_Del	T	-	p.T506fs
LIHC	TCGA-DD-A39Y-01	CLCN3	ENST00000507875.1,ENST00000513761.1,ENST00000347613.4,ENST00000511092.1,ENST00000504131.2,ENST00000360642.3	chr4	170601218:170601358:170608808:170608908:170610193:170610296,	170608809	170608908	170608847	170608847	Frame_Shift_Del	A	-	p.T119fs
LIHC	TCGA-DD-A39Y-01	SAP30	ENST00000296504.3	chr4	174292093:174292648:174294540:174294666:174295089:174295188,	174294541	174294666	174294571	174294571	Frame_Shift_Del	A	-	p.K116fs
LIHC	TCGA-DD-A39Y-01	FBXO8	ENST00000515664.1,ENST00000503293.1,ENST00000393674.2	chr4	175158509:175158750:175160144:175160341:175162250:175162369,	175160145	175160341	175160263	175160263	Frame_Shift_Del	A	-	p.F218fs
LIHC	TCGA-DD-A39Y-01	FBXO8	ENST00000513696.1,ENST00000503293.1,ENST00000393674.2	chr4	175162273:175162369:175180849:175180976:175183914:175183946,	175180850	175180976	175180868	175180868	Frame_Shift_Del	A	-	p.F146fs
LIHC	TCGA-DD-A39Y-01	FBXO8	ENST00000513696.1,ENST00000503293.1,ENST00000393674.2	chr4	175162273:175162369:175180849:175180976:175183914:175183946,	175180850	175180976	175180915	175180915	Frame_Shift_Del	A	-	p.S131fs
LIHC	TCGA-DD-A39Y-01	CEP44	ENST00000503780.1,ENST00000396791.3,ENST00000296519.4	chr4	175237316:175237441:175237680:175237718:175238485:175238530,	175237681	175237718	175237711	175237711	Frame_Shift_Del	A	-	p.K374fs
LIHC	TCGA-DD-A39Y-01	GLRA3	ENST00000340217.5	chr4	175563637:175565215:175580204:175580348:175598228:175598443,	175580205	175580348	175580241	175580241	Frame_Shift_Del	T	-	p.K345fs
LIHC	TCGA-DD-A39Y-01	WDR17	ENST00000507824.2,ENST00000280190.4,ENST00000508596.1,ENST00000393643.2	chr4	177032725:177032854:177036946:177037130:177041017:177041248,	177036947	177037130	177037098	177037098	Frame_Shift_Del	A	-	p.Q92fs
LIHC	TCGA-DD-A39Y-01	TENM3	ENST00000511685.1,ENST00000406950.2	chr4	183696070:183696306:183710245:183710542:183713426:183715038,	183710246	183710542	183710479	183710479	Frame_Shift_Del	G	-	p.Q1846fs
LIHC	TCGA-DD-A39Y-01	WWC2	ENST00000378925.3,ENST00000448232.2,ENST00000513834.1	chr4	184020644:184020775:184114751:184114861:184129105:184129309,	184114752	184114861	184114802	184114802	Frame_Shift_Del	G	-	p.W61fs
LIHC	TCGA-DD-A39Y-01	WWC2	ENST00000403733.3,ENST00000378925.3,ENST00000448232.2,ENST00000438543.1,ENST00000513834.1	chr4	184161335:184161415:184166568:184166698:184169866:184170013,	184166569	184166698	184166576	184166576	Frame_Shift_Del	A	-	p.K205fs
LIHC	TCGA-DD-A39Y-01	WWC2	ENST00000403733.3,ENST00000427431.1,ENST00000448232.2,ENST00000504005.1,ENST00000513834.1	chr4	184190123:184190316:184192232:184192394:184201928:184202050,	184192233	184192394	184192266	184192266	Frame_Shift_Del	T	-	p.F812fs
LIHC	TCGA-DD-A39Y-01	TRAPPC11	ENST00000357207.4,ENST00000512476.1,ENST00000334690.6	chr4	184606423:184606556:184607770:184607901:184612468:184612624,	184607771	184607901	184607869	184607869	Frame_Shift_Del	T	-	p.F621fs
LIHC	TCGA-DD-A39Y-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184932371	184932371	Frame_Shift_Del	A	-	p.K794fs
LIHC	TCGA-DD-A39Y-01	ACSL1	ENST00000281455.2,ENST00000504900.1,ENST00000507295.1	chr4	185709770:185709885:185724473:185724700:185747069:185747188,	185724474	185724700	185724525	185724525	Frame_Shift_Del	G	-	p.P48fs
LIHC	TCGA-DD-A39Y-01	SLC25A4	ENST00000491736.1	chr4	186066219:186066404:186066508:186067053:186067967:186068395,	186066509	186067053	186066943	186066943	Frame_Shift_Del	T	-	p.I210fs
LIHC	TCGA-DD-A39Y-01	SLC25A4	ENST00000281456.6	chr4	186066219:186066404:186066912:186067053:186067967:186068395,	186066913	186067053	186066943	186066943	Frame_Shift_Del	T	-	p.I210fs
LIHC	TCGA-DD-A39Y-01	SNX25	ENST00000264694.8,ENST00000504273.1,ENST00000504959.1	chr4	186263129:186263270:186267690:186267804:186274638:186274756,186263129:186263270:186267690:186267804:186272598:186272763,	186267691	186267804	186267796	186267796	Frame_Shift_Del	T	-	p.F601fs
LIHC	TCGA-DD-A39Y-01	SNX25	ENST00000512853.1	chr4	186272598:186272763:186274638:186274756:186278824:186278891,186267690:186267804:186274638:186274756:186278824:186278891,	186274639	186274756	186274739	186274739	Frame_Shift_Del	T	-	p.I692fs
LIHC	TCGA-DD-A39Y-01	LRP2BP	ENST00000505916.1	chr4	186298062:186298172:186299234:186299361:186315932:186315993,	186299235	186299361	186299240	186299240	Frame_Shift_Del	T	-	p.K34fs
LIHC	TCGA-DD-A39Y-01	LRP2BP	ENST00000505916.1	chr4	186298062:186298172:186299234:186299361:186315932:186315993,	186299235	186299361	186299270	186299270	Frame_Shift_Del	T	-	p.N24fs
LIHC	TCGA-DD-A39Y-01	LRP2BP	ENST00000505916.1	chr4	186298062:186298172:186299234:186299361:186315932:186315993,	186299235	186299361	186299305	186299305	Frame_Shift_Del	G	-	p.P12fs
LIHC	TCGA-DD-A39Y-01	UFSP2	ENST00000505357.1,ENST00000510755.1,ENST00000264689.6	chr4	186336964:186337021:186339594:186339661:186339740:186339924,	186339595	186339661	186339636	186339636	Frame_Shift_Del	T	-	p.R98fs
LIHC	TCGA-DD-A39Y-01	PDLIM3	ENST00000504011.1,ENST00000284767.5	chr4	186427675:186427806:186435856:186436044:186444515:186444600,186435423:186435491:186435856:186436044:186444515:186444600,	186435857	186436044	186435931	186435931	Frame_Shift_Del	C	-	p.G148fs
LIHC	TCGA-DD-A39Y-01	PDLIM3	ENST00000504011.1,ENST00000284767.5	chr4	186427675:186427806:186435856:186436044:186444515:186444600,186435423:186435491:186435856:186436044:186444515:186444600,	186435857	186436044	186435969	186435969	Frame_Shift_Del	T	-	p.R136fs
LIHC	TCGA-DD-A39Y-01	SORBS2	ENST00000430503.1,ENST00000444781.1,ENST00000445115.1,ENST00000457247.1,ENST00000445343.1,ENST00000319454.6,ENST00000421639.1,ENST00000393523.2,ENST00000393528.3,ENST00000450341.1	chr4	186583388:186583396:186599576:186599632:186599949:186599976,	186599577	186599632	186599628	186599628	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A39Y-01	SORBS2	ENST00000414724.1,ENST00000451958.1,ENST00000419063.1,ENST00000355634.5,ENST00000493709.1,ENST00000439914.1,ENST00000435480.1,ENST00000448662.2,ENST00000470685.1,ENST00000449407.2,ENST00000456596.1,ENST00000431808.1,ENST00000457934.1,ENST00000431902.1,ENST00000439049.1,ENST00000284776.7,ENST00000415274.1,ENST00000432655.1,ENST00000420158.1,ENST00000319471.9,ENST00000425679.1,ENST00000444771.1	chr4	186583388:186583396:186599576:186599701:186599949:186599976,	186599577	186599701	186599628	186599628	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A39Y-01	F11	ENST00000452239.1,ENST00000403665.2,ENST00000264692.4	chr4	187197008:187197050:187197384:187197544:187201165:187201275,	187197385	187197544	187197501	187197501	Frame_Shift_Del	T	-	p.F187fs
LIHC	TCGA-DD-A39Y-01	FAT1	ENST00000441802.2,ENST00000500085.2	chr4	187510225:187510374:187516842:187516980:187517693:187517995,	187516843	187516980	187516880	187516880	Frame_Shift_Del	A	-	p.S4367fs
LIHC	TCGA-DD-A39Y-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187518218	187518218	Frame_Shift_Del	C	-	p.G4159fs
LIHC	TCGA-DD-A39Y-01	FAT1	ENST00000507105.1	chr4	187516842:187516980:187518187:187518325:187518835:187518946,	187518188	187518325	187518218	187518218	Frame_Shift_Del	C	-	p.G4159fs
LIHC	TCGA-DD-A39Y-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539144	187539144	Frame_Shift_Del	T	-	p.T2866fs
LIHC	TCGA-DD-A39Y-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542666	187542666	Frame_Shift_Del	G	-	p.H1692fs
LIHC	TCGA-DD-A39Y-01	FRG1	ENST00000514482.1	chr4	190862178:190862226:190864356:190864427:190873316:190873442,	190864357	190864427	190864407	190864407	Frame_Shift_Del	A	-	p.E38fs
LIHC	TCGA-DD-A39Y-01	FRG1	ENST00000533157.1,ENST00000514482.1,ENST00000531991.2,ENST00000226798.4	chr4	190873316:190873442:190874222:190874280:190876191:190876305,	190874223	190874280	190874264	190874264	Frame_Shift_Del	A	-	p.K101fs
LIHC	TCGA-DD-A39Y-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163254	163254	Frame_Shift_Del	G	-	p.G667fs
LIHC	TCGA-DD-A39Y-01	SDHA	ENST00000504309.1,ENST00000264932.6,ENST00000505555.1,ENST00000504824.1	chr5	224474:224636:225533:225677:225997:226162,	225534	225677	225658	225658	Frame_Shift_Del	C	-	p.A146fs
LIHC	TCGA-DD-A39Y-01	EXOC3	ENST00000315013.5,ENST00000511015.1,ENST00000503889.2,ENST00000512944.1	chr5	462074:462185:462271:462422:464404:464527,	462272	462422	462358	462358	Frame_Shift_Del	T	-	p.I530fs
LIHC	TCGA-DD-A39Y-01	EXOC3	ENST00000515601.2	chr5	462074:462185:462271:462644:464404:464527,	462272	462644	462358	462358	Frame_Shift_Del	T	-	p.I530fs
LIHC	TCGA-DD-A39Y-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	474997:475247:475675:475786:476134:476207,	475676	475786	475755	475755	Frame_Shift_Del	G	-	p.P724fs
LIHC	TCGA-DD-A39Y-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	483376:483597:484634:484812:485267:485346,	484635	484812	484771	484771	Frame_Shift_Del	C	-	p.V267fs
LIHC	TCGA-DD-A39Y-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	483376:483597:484634:484812:485267:485346,	484635	484812	484785	484785	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-DD-A39Y-01	CLPTM1L	ENST00000507807.1,ENST00000320927.6	chr5	1325865:1325931:1331917:1331998:1334403:1334498,	1331918	1331998	1331970	1331970	Frame_Shift_Del	T	-	p.N307fs
LIHC	TCGA-DD-A39Y-01	LPCAT1	ENST00000475622.1,ENST00000283415.3	chr5	1461954:1463950:1466863:1467005:1470940:1471039,	1466864	1467005	1466905	1466905	Frame_Shift_Del	A	-	p.F460fs
LIHC	TCGA-DD-A39Y-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6607312:6607497:6609938:6610035:6611067:6611198,	6609939	6610035	6609972	6609972	Frame_Shift_Del	T	-	p.K430fs
LIHC	TCGA-DD-A39Y-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6607312:6607497:6609938:6610035:6611067:6611198,	6609939	6610035	6609993	6609993	Frame_Shift_Del	A	-	p.F423fs
LIHC	TCGA-DD-A39Y-01	CCT5	ENST00000515676.1,ENST00000506600.1,ENST00000280326.4,ENST00000515390.1,ENST00000503026.1	chr5	10261671:10261857:10262592:10262730:10263245:10263371,	10262593	10262730	10262680	10262680	Frame_Shift_Del	G	-	p.G423fs
LIHC	TCGA-DD-A39Y-01	CCT5	ENST00000515676.1,ENST00000506600.1,ENST00000280326.4,ENST00000511995.1,ENST00000515390.1,ENST00000503026.1	chr5	10262592:10262730:10263245:10263426:10264767:10265014,	10263246	10263426	10263319	10263319	Frame_Shift_Del	A	-	p.E464fs
LIHC	TCGA-DD-A39Y-01	ROPN1L	ENST00000510520.1	chr5	10450063:10450225:10461295:10461471:10471921:10472141,	10461296	10461471	10461380	10461380	Frame_Shift_Del	T	-	p.F168fs
LIHC	TCGA-DD-A39Y-01	CTNND2	ENST00000458100.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11083992:11084067:11098686:11098860:11110969:11111155,11082807:11082958:11098686:11098860:11110969:11111155,	11098687	11098860	11098777	11098777	Frame_Shift_Del	G	-	p.P849fs
LIHC	TCGA-DD-A39Y-01	DNAH5	ENST00000265104.4	chr5	13714513:13714729:13716595:13716799:13717423:13717629,	13716596	13716799	13716655	13716655	Frame_Shift_Del	A	-	p.Y4284fs
LIHC	TCGA-DD-A39Y-01	DNAH5	ENST00000265104.4	chr5	13811755:13811932:13814713:13814955:13817656:13817803,	13814714	13814955	13814754	13814754	Frame_Shift_Del	A	-	p.F2397fs
LIHC	TCGA-DD-A39Y-01	FBXL7	ENST00000504595.1,ENST00000329673.7,ENST00000510662.1	chr5	15616091:15616181:15927998:15928610:15936558:15937295,	15927999	15928610	15928582	15928582	Frame_Shift_Del	C	-	p.C237fs
LIHC	TCGA-DD-A39Y-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16676139:16676263:16680055:16680213:16681417:16681612,	16680056	16680213	16680083	16680083	Frame_Shift_Del	G	-	p.P1505fs
LIHC	TCGA-DD-A39Y-01	MYO10	ENST00000513882.1,ENST00000513610.1	chr5	16761572:16761655:16762153:16762222:16762653:16762746,	16762154	16762222	16762178	16762178	Frame_Shift_Del	A	-	p.F544fs
LIHC	TCGA-DD-A39Y-01	MYO10	ENST00000513882.1,ENST00000502436.1,ENST00000513610.1	chr5	16781813:16781938:16783443:16783578:16794754:16794942,	16783444	16783578	16783501	16783501	Frame_Shift_Del	A	-	p.L182fs
LIHC	TCGA-DD-A39Y-01	DROSHA	ENST00000344624.3,ENST00000511367.2	chr5	31515100:31515326:31521229:31521322:31526185:31526397,31515560:31515671:31521229:31521322:31526185:31526344,	31521230	31521322	31521250	31521250	Frame_Shift_Del	T	-	p.K309fs
LIHC	TCGA-DD-A39Y-01	PDZD2	ENST00000282493.3,ENST00000438447.1,ENST00000502489.1	chr5	31995681:31995824:32000244:32000377:32010435:32010588,	32000245	32000377	32000285	32000285	Frame_Shift_Del	A	-	p.N388fs
LIHC	TCGA-DD-A39Y-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087802	32087802	Frame_Shift_Del	A	-	p.P1416fs
LIHC	TCGA-DD-A39Y-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089327	32089327	Frame_Shift_Del	A	-	p.K1925fs
LIHC	TCGA-DD-A39Y-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089412	32089412	Frame_Shift_Del	C	-	p.S1953fs
LIHC	TCGA-DD-A39Y-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32097384:32097486:32098469:32098740:32101210:32101345,	32098470	32098740	32098482	32098482	Frame_Shift_Del	T	-	p.F2654fs
LIHC	TCGA-DD-A39Y-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32097384:32097486:32098469:32098740:32101210:32101345,	32098470	32098740	32098490	32098490	Frame_Shift_Del	G	-	p.Q2656fs
LIHC	TCGA-DD-A39Y-01	PDZD2	ENST00000513490.1,ENST00000515115.1	chr5	32100972:32101069:32101210:32101345:32108074:32108877,	32101211	32101345	32101288	32101288	Frame_Shift_Del	G	-	p.G2767fs
LIHC	TCGA-DD-A39Y-01	MTMR12	ENST00000382142.3	chr5	32230190:32230453:32233878:32234040:32235067:32235210,	32233879	32234040	32233940	32233940	Frame_Shift_Del	T	-	p.N538fs
LIHC	TCGA-DD-A39Y-01	MTMR12	ENST00000382142.3	chr5	32230190:32230453:32235067:32235235:32239106:32239209,32233878:32234040:32235067:32235235:32239106:32239209,	32235068	32235235	32235080	32235080	Frame_Shift_Del	T	-	p.K500fs
LIHC	TCGA-DD-A39Y-01	MTMR12	ENST00000505419.1	chr5	32271938:32272011:32274085:32274228:32312863:32313030,	32274086	32274228	32274114	32274114	Frame_Shift_Del	C	-	p.G86fs
LIHC	TCGA-DD-A39Y-01	ZFR	ENST00000510369.1	chr5	32379220:32379316:32380180:32380278:32385613:32385755,32379220:32379316:32380180:32380278:32383866:32383925,	32380181	32380278	32380226	32380226	Frame_Shift_Del	T	-	p.K898fs
LIHC	TCGA-DD-A39Y-01	ZFR	ENST00000265069.8	chr5	32395264:32395410:32397324:32397444:32400111:32400308,	32397325	32397444	32397401	32397401	Frame_Shift_Del	A	-	p.L586fs
LIHC	TCGA-DD-A39Y-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963809	33963809	Frame_Shift_Del	T	-	p.N292fs
LIHC	TCGA-DD-A39Y-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963815	33963815	Frame_Shift_Del	T	-	p.N290fs
LIHC	TCGA-DD-A39Y-01	RAI14	ENST00000514036.1,ENST00000514527.1,ENST00000512625.1,ENST00000265109.3,ENST00000513974.1,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000503673.1,ENST00000507276.1,ENST00000514873.1,ENST00000428746.2,ENST00000502736.1,ENST00000508315.1,ENST00000512305.1,ENST00000397449.1,ENST00000504052.1	chr5	34757572:34757703:34796043:34796132:34803816:34803873,	34796044	34796132	34796102	34796102	Frame_Shift_Del	G	-	p.G76fs
LIHC	TCGA-DD-A39Y-01	RAI14	ENST00000265109.3,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000503673.1,ENST00000508777.1,ENST00000428746.2,ENST00000397449.1	chr5	34814687:34814774:34818901:34818956:34821836:34821938,	34818902	34818956	34818924	34818924	Frame_Shift_Del	A	-	p.E321fs
LIHC	TCGA-DD-A39Y-01	RAI14	ENST00000265109.3,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000503673.1,ENST00000428746.2,ENST00000397449.1	chr5	34823060:34824596:34826434:34826584:34829836:34829902,	34826435	34826584	34826462	34826462	Frame_Shift_Del	A	-	p.K893fs
LIHC	TCGA-DD-A39Y-01	TTC23L	ENST00000502674.1,ENST00000505624.1,ENST00000514080.1,ENST00000506758.1	chr5	34845591:34845778:34850289:34850413:34863002:34863115,	34850290	34850413	34850342	34850342	Frame_Shift_Del	T	-	p.I103fs
LIHC	TCGA-DD-A39Y-01	RAD1	ENST00000325577.4	chr5	34911722:34911917:34914799:34915066:34915520:34915609,	34914800	34915066	34914991	34914991	Frame_Shift_Del	G	-	p.L4fs
LIHC	TCGA-DD-A39Y-01	DNAJC21	ENST00000382021.2	chr5	34945865:34945908:34949647:34949782:34950274:34950447,	34949648	34949782	34949704	34949704	Frame_Shift_Del	A	-	p.G414fs
LIHC	TCGA-DD-A39Y-01	AGXT2	ENST00000231420.6,ENST00000510428.1	chr5	35025867:35025960:35026514:35026615:35032836:35032930,	35026515	35026615	35026531	35026531	Frame_Shift_Del	A	-	p.F285fs
LIHC	TCGA-DD-A39Y-01	PRLR	ENST00000231423.3	chr5	35048876:35049513:35066050:35066204:35068317:35068387,	35066051	35066204	35066151	35066151	Frame_Shift_Del	G	-	p.P303fs
LIHC	TCGA-DD-A39Y-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985528	36985528	Frame_Shift_Del	A	-	p.Q749fs
LIHC	TCGA-DD-A39Y-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	36995851:36995906:37000474:37000672:37000918:37000990,	37000475	37000672	37000546	37000546	Frame_Shift_Del	G	-	p.G1126fs
LIHC	TCGA-DD-A39Y-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37057287:37057434:37058992:37059267:37060945:37061120,	37058993	37059267	37059139	37059139	Frame_Shift_Del	A	-	p.I2519fs
LIHC	TCGA-DD-A39Y-01	NUP155	ENST00000231498.3,ENST00000381843.2	chr5	37309230:37309369:37310653:37310845:37314299:37314428,	37310654	37310845	37310789	37310789	Frame_Shift_Del	T	-	p.K831fs
LIHC	TCGA-DD-A39Y-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2	chr5	37318089:37318187:37324093:37324209:37326002:37326069,	37324094	37324209	37324203	37324203	Frame_Shift_Del	T	-	p.S701fs
LIHC	TCGA-DD-A39Y-01	WDR70	ENST00000511906.1,ENST00000504564.1,ENST00000265107.4	chr5	37438023:37438083:37443340:37443474:37479935:37480089,	37443341	37443474	37443439	37443439	Frame_Shift_Del	T	-	p.S217fs
LIHC	TCGA-DD-A39Y-01	GDNF	ENST00000515058.1	chr5	37816127:37816237:37834825:37834924:37839608:37839782,	37834826	37834924	37834886	37834886	Frame_Shift_Del	C	-	p.D5fs
LIHC	TCGA-DD-A39Y-01	EGFLAM	ENST00000322350.5,ENST00000354891.3,ENST00000336740.6	chr5	38412605:38412750:38418167:38418357:38425068:38425194,	38418168	38418357	38418254	38418254	Frame_Shift_Del	A	-	p.T527fs
LIHC	TCGA-DD-A39Y-01	LIFR	ENST00000503088.1,ENST00000263409.4,ENST00000453190.2	chr5	38499614:38499685:38502738:38502901:38504077:38504223,	38502739	38502901	38502761	38502761	Frame_Shift_Del	T	-	p.K526fs
LIHC	TCGA-DD-A39Y-01	RICTOR	ENST00000357387.3,ENST00000296782.5	chr5	38945592:38945826:38946569:38946654:38947365:38947543,	38946570	38946654	38946623	38946623	Frame_Shift_Del	T	-	p.N1449fs
LIHC	TCGA-DD-A39Y-01	DAB2	ENST00000320816.6	chr5	39381555:39381718:39382719:39383373:39388406:39388469,	39382720	39383373	39382901	39382901	Frame_Shift_Del	T	-	p.N387fs
LIHC	TCGA-DD-A39Y-01	PRKAA1	ENST00000509874.1	chr5	40767608:40767792:40771820:40771965:40775511:40775605,	40771821	40771965	40771835	40771835	Frame_Shift_Del	T	-	p.K165fs
LIHC	TCGA-DD-A39Y-01	C7	ENST00000313164.9,ENST00000508185.1	chr5	40936439:40936587:40937653:40937792:40945299:40945462,	40937654	40937792	40937700	40937700	Frame_Shift_Del	A	-	p.K159fs
LIHC	TCGA-DD-A39Y-01	C6	ENST00000337836.5,ENST00000263413.3	chr5	41195893:41196035:41199869:41200014:41201659:41201816,	41199870	41200014	41199995	41199995	Frame_Shift_Del	A	-	p.L107fs
LIHC	TCGA-DD-A39Y-01	OXCT1	ENST00000514723.1	chr5	41749702:41749709:41762212:41762302:41794104:41794180,41749702:41749709:41762212:41762302:41840552:41840613,	41762213	41762302	41762248	41762248	Frame_Shift_Del	T	-	p.T435fs
LIHC	TCGA-DD-A39Y-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927142	41927142	Frame_Shift_Del	T	-	p.F73fs
LIHC	TCGA-DD-A39Y-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927297	41927297	Frame_Shift_Del	A	-	p.L124fs
LIHC	TCGA-DD-A39Y-01	ZNF131	ENST00000509156.1,ENST00000399534.1	chr5	43123310:43123412:43161350:43162033:43173419:43173550,43139266:43139411:43161350:43162033:43173419:43173550,	43161351	43162033	43161952	43161952	Frame_Shift_Del	A	-	p.K292fs
LIHC	TCGA-DD-A39Y-01	HMGCS1	ENST00000325110.6,ENST00000433297.2	chr5	43297103:43297268:43298110:43298236:43298619:43299077,	43298111	43298236	43298188	43298188	Frame_Shift_Del	C	-	p.G166fs
LIHC	TCGA-DD-A39Y-01	C5orf34	ENST00000514462.1	chr5	43505849:43506496:43508678:43508768:43514907:43515126,	43508679	43508768	43508713	43508713	Frame_Shift_Del	A	-	p.L84fs
LIHC	TCGA-DD-A39Y-01	PAIP1	ENST00000436644.2,ENST00000508537.1,ENST00000338972.4,ENST00000306846.3,ENST00000511321.1,ENST00000514514.1	chr5	43536955:43537046:43543105:43543218:43547829:43548015,43539030:43539137:43543105:43543218:43547829:43547939,	43543106	43543218	43543142	43543142	Frame_Shift_Del	G	-	p.P233fs
LIHC	TCGA-DD-A39Y-01	NNT	ENST00000344920.4	chr5	43603300:43603396:43609244:43609448:43613009:43613104,	43609245	43609448	43609306	43609306	Frame_Shift_Del	C	-	p.N3fs
LIHC	TCGA-DD-A39Y-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43628301:43628489:43644293:43644427:43644712:43644904,	43644294	43644427	43644296	43644296	Frame_Shift_Del	A	-	p.K324fs
LIHC	TCGA-DD-A39Y-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000503750.2,ENST00000281631.5,ENST00000503790.2,ENST00000515166.1,ENST00000503707.2,ENST00000510303.2,ENST00000502524.1,ENST00000503046.1	chr5	49963390:49963435:49963904:49963959:50045984:50046022,49962922:49963020:49963904:49963959:50045984:50046022,	49963905	49963959	49963928	49963928	Frame_Shift_Del	T	-	p.F39fs
LIHC	TCGA-DD-A39Y-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50122588:50122637:50123777:50123890:50124145:50124218,	50123778	50123890	50123859	50123859	Frame_Shift_Del	A	-	p.K688fs
LIHC	TCGA-DD-A39Y-01	ITGA2	ENST00000510722.1,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52344192:52344307:52344472:52344600:52347240:52347389,	52344473	52344600	52344549	52344549	Frame_Shift_Del	T	-	p.N193fs
LIHC	TCGA-DD-A39Y-01	NDUFS4	ENST00000296684.5,ENST00000506974.1,ENST00000502423.1,ENST00000507026.1	chr5	52942062:52942235:52954380:52954454:52978947:52978968,	52954381	52954454	52954446	52954446	Frame_Shift_Del	A	-	p.E139fs
LIHC	TCGA-DD-A39Y-01	ARL15	ENST00000510591.2,ENST00000502271.1,ENST00000504924.1	chr5	53182274:53182543:53409031:53409240:53450409:53450469,	53409032	53409240	53409081	53409081	Frame_Shift_Del	A	-	p.L138fs
LIHC	TCGA-DD-A39Y-01	ARL15	ENST00000505383.1,ENST00000507646.2,ENST00000505630.1,ENST00000504924.1	chr5	53450409:53450469:53467613:53467758:53606124:53606245,53450409:53450469:53467613:53467758:53606261:53606403,	53467614	53467758	53467671	53467671	Frame_Shift_Del	T	-	p.T46fs
LIHC	TCGA-DD-A39Y-01	GPX8	ENST00000506123.1	chr5	54456022:54456071:54456821:54457083:54459882:54459959,54456157:54456224:54456821:54457083:54459882:54459959,	54456822	54457083	54456932	54456932	Frame_Shift_Del	T	-	p.A105fs
LIHC	TCGA-DD-A39Y-01	GPX8	ENST00000511617.1	chr5	54456157:54456224:54456879:54457083:54459882:54459959,	54456880	54457083	54456932	54456932	Frame_Shift_Del	T	-	p.A105fs
LIHC	TCGA-DD-A39Y-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54552076:54552368:54555675:54555772:54557195:54557327,	54555676	54555772	54555768	54555768	Frame_Shift_Del	G	-	p.P1322fs
LIHC	TCGA-DD-A39Y-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54581120:54581244:54581523:54581689:54585097:54585256,	54581524	54581689	54581553	54581553	Frame_Shift_Del	T	-	p.K401fs
LIHC	TCGA-DD-A39Y-01	SLC38A9	ENST00000396865.2,ENST00000511233.1,ENST00000512595.1,ENST00000416547.2,ENST00000512208.1,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3,ENST00000507447.1	chr5	54960520:54960691:54965055:54965149:54965384:54965448,	54965056	54965149	54965103	54965103	Frame_Shift_Del	A	-	p.L160fs
LIHC	TCGA-DD-A39Y-01	IL31RA	ENST00000354961.4,ENST00000490985.1,ENST00000447346.2,ENST00000396834.1,ENST00000359040.5	chr5	55206359:55206500:55209304:55209398:55210674:55210756,	55209305	55209398	55209388	55209388	Frame_Shift_Del	A	-	p.K558fs
LIHC	TCGA-DD-A39Y-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247869	55247869	Frame_Shift_Del	T	-	p.K529fs
LIHC	TCGA-DD-A39Y-01	PDE4D	ENST00000546160.1,ENST00000505453.1,ENST00000360047.5,ENST00000309641.6,ENST00000358923.6,ENST00000317118.8,ENST00000503258.1,ENST00000502484.2,ENST00000515011.1,ENST00000507116.1,ENST00000340635.6,ENST00000405755.2	chr5	58286630:58286729:58287658:58287831:58289198:58289292,	58287659	58287831	58287677	58287677	Frame_Shift_Del	T	-	p.Q390fs
LIHC	TCGA-DD-A39Y-01	ELOVL7	ENST00000504455.1	chr5	60063649:60063730:60067775:60067920:60083160:60083258,	60067776	60067920	60067844	60067844	Frame_Shift_Del	A	-	p.F34fs
LIHC	TCGA-DD-A39Y-01	ELOVL7	ENST00000511799.1,ENST00000438340.1,ENST00000507047.1,ENST00000508821.1,ENST00000425382.1	chr5	60063649:60063730:60067729:60067920:60083160:60083258,	60067730	60067920	60067844	60067844	Frame_Shift_Del	A	-	p.F34fs
LIHC	TCGA-DD-A39Y-01	IPO11	ENST00000325324.6,ENST00000409296.3,ENST00000409534.1	chr5	61887403:61887499:61897590:61897675:61922980:61923396,	61897591	61897675	61897641	61897641	Frame_Shift_Del	A	-	p.E910fs
LIHC	TCGA-DD-A39Y-01	IPO11	ENST00000325324.6,ENST00000409296.3,ENST00000409534.1	chr5	61887403:61887499:61897590:61897675:61922980:61923396,	61897591	61897675	61897667	61897667	Frame_Shift_Del	A	-	p.K920fs
LIHC	TCGA-DD-A39Y-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63509768	63509768	Frame_Shift_Del	A	-	p.P205fs
LIHC	TCGA-DD-A39Y-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63510309	63510309	Frame_Shift_Del	A	-	p.K386fs
LIHC	TCGA-DD-A39Y-01	SREK1IP1	ENST00000495198.2	chr5	64036962:64037027:64050141:64050189:64060871:64060948,64036962:64037027:64050141:64050189:64064331:64064446,	64050142	64050189	64050152	64050152	Frame_Shift_Del	T	-	p.K17fs
LIHC	TCGA-DD-A39Y-01	TRAPPC13	ENST00000438419.2,ENST00000399438.3,ENST00000505553.1,ENST00000512009.1,ENST00000231526.4,ENST00000508304.1,ENST00000545191.1	chr5	64931773:64931870:64933522:64933607:64942881:64943009,	64933523	64933607	64933530	64933530	Frame_Shift_Del	T	-	p.F75fs
LIHC	TCGA-DD-A39Y-01	NLN	ENST00000506539.1,ENST00000511299.1,ENST00000502464.1,ENST00000506799.1,ENST00000380985.5	chr5	65081601:65081737:65083944:65084311:65088280:65088428,	65083945	65084311	65084282	65084282	Frame_Shift_Del	G	-	p.L432fs
LIHC	TCGA-DD-A39Y-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466697	65466697	Frame_Shift_Del	A	-	p.E469fs
LIHC	TCGA-DD-A39Y-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466714	65466714	Frame_Shift_Del	A	-	p.K476fs
LIHC	TCGA-DD-A39Y-01	MAST4	ENST00000490016.2,ENST00000403625.2,ENST00000447738.1,ENST00000436277.1,ENST00000261569.7,ENST00000403666.1	chr5	66385989:66386059:66391424:66391503:66396262:66396420,	66391425	66391503	66391458	66391458	Frame_Shift_Del	C	-	p.L292fs
LIHC	TCGA-DD-A39Y-01	MAST4	ENST00000405643.1,ENST00000403625.2,ENST00000261569.7,ENST00000403666.1,ENST00000404260.3	chr5	66441063:66441207:66445216:66445417:66448464:66448694,	66445217	66445417	66445410	66445410	Frame_Shift_Del	C	-	p.I1099fs
LIHC	TCGA-DD-A39Y-01	SLC30A5	ENST00000396591.3,ENST00000507354.1	chr5	68414325:68414455:68417520:68417722:68419025:68419247,	68417521	68417722	68417555	68417555	Frame_Shift_Del	T	-	p.I535fs
LIHC	TCGA-DD-A39Y-01	CCNB1	ENST00000506572.1,ENST00000256442.5	chr5	68470703:68470940:68471223:68471364:68473065:68473176,	68471224	68471364	68471289	68471289	Frame_Shift_Del	G	-	p.M336fs
LIHC	TCGA-DD-A39Y-01	CENPH	ENST00000283006.2,ENST00000515001.1,ENST00000502689.1	chr5	68498332:68498396:68498745:68498797:68504022:68504186,	68498746	68498797	68498765	68498765	Frame_Shift_Del	A	-	p.E152fs
LIHC	TCGA-DD-A39Y-01	CENPH	ENST00000283006.2,ENST00000515001.1,ENST00000502689.1	chr5	68498745:68498797:68504022:68504186:68505533:68505628,	68504023	68504186	68504134	68504134	Frame_Shift_Del	A	-	p.Q200fs
LIHC	TCGA-DD-A39Y-01	CDK7	ENST00000506789.1	chr5	68546571:68546658:68548244:68548278:68550428:68550494,68531220:68531280:68548244:68548278:68550428:68550494,68531220:68531280:68548244:68548278:68553869:68553980,	68548245	68548278	68548272	68548272	Frame_Shift_Del	A	-	p.K52fs
LIHC	TCGA-DD-A39Y-01	CDK7	ENST00000256443.3,ENST00000513629.1,ENST00000510106.1,ENST00000508726.1,ENST00000502604.1,ENST00000514676.1,ENST00000506563.1	chr5	68558031:68558131:68565033:68565120:68568718:68568731,	68565034	68565120	68565039	68565039	Frame_Shift_Del	T	-	p.P118fs
LIHC	TCGA-DD-A39Y-01	CCDC125	ENST00000511257.1,ENST00000383374.2,ENST00000396499.1,ENST00000396496.2	chr5	68595838:68595954:68599673:68599756:68602643:68602729,	68599674	68599756	68599710	68599710	Frame_Shift_Del	T	-	p.T222fs
LIHC	TCGA-DD-A39Y-01	CCDC125	ENST00000511257.1,ENST00000383374.2,ENST00000396499.1,ENST00000396496.2	chr5	68599673:68599756:68602643:68602729:68603777:68603855,	68602644	68602729	68602652	68602652	Frame_Shift_Del	T	-	p.K203fs
LIHC	TCGA-DD-A39Y-01	RAD17	ENST00000509734.1	chr5	68666910:68666998:68667280:68667384:68667860:68667881,68666910:68666998:68667280:68667384:68669656:68669709,	68667281	68667384	68667354	68667354	Frame_Shift_Del	T	-	p.T4fs
LIHC	TCGA-DD-A39Y-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70779668:70779723:70782310:70782454:70785230:70785509,	70782311	70782454	70782336	70782336	Frame_Shift_Del	T	-	p.D365fs
LIHC	TCGA-DD-A39Y-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70785230:70785509:70786810:70786958:70791076:70791235,	70786811	70786958	70786947	70786947	Frame_Shift_Del	C	-	p.I543fs
LIHC	TCGA-DD-A39Y-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2,ENST00000508157.3	chr5	70797388:70797480:70798425:70798618:70800447:70800578,	70798426	70798618	70798503	70798503	Frame_Shift_Del	A	-	p.Q709fs
LIHC	TCGA-DD-A39Y-01	BDP1	ENST00000358731.4,ENST00000380675.2	chr5	70855808:70856064:70858100:70858347:70860580:70863647,	70858101	70858347	70858114	70858114	Frame_Shift_Del	C	-	p.P2504fs
LIHC	TCGA-DD-A39Y-01	MCCC2	ENST00000512218.2,ENST00000509358.2,ENST00000505787.3,ENST00000323375.8,ENST00000340941.6	chr5	70895485:70895587:70898332:70898460:70900182:70900295,	70898333	70898460	70898400	70898400	Frame_Shift_Del	A	-	p.K152fs
LIHC	TCGA-DD-A39Y-01	MCCC2	ENST00000512218.2	chr5	70936829:70936910:70939597:70939722:70942037:70942104,	70939598	70939722	70939702	70939702	Frame_Shift_Del	T	-	p.F377fs
LIHC	TCGA-DD-A39Y-01	MRPS27	ENST00000522042.1,ENST00000513900.1,ENST00000508863.2,ENST00000261413.5,ENST00000457646.4	chr5	71521919:71522026:71524092:71524195:71528269:71528385,	71524093	71524195	71524145	71524145	Frame_Shift_Del	T	-	p.K214fs
LIHC	TCGA-DD-A39Y-01	PTCD2	ENST00000503315.1,ENST00000486995.1,ENST00000460837.2,ENST00000308077.5,ENST00000510676.2,ENST00000380639.5,ENST00000503868.1,ENST00000543322.1,ENST00000536805.1	chr5	71638788:71638863:71648467:71648581:71654029:71654045,	71648468	71648581	71648518	71648518	Frame_Shift_Del	A	-	p.L293fs
LIHC	TCGA-DD-A39Y-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72189203:72189362:72189442:72189530:72192284:72192383,	72189443	72189530	72189477	72189477	Frame_Shift_Del	C	-	p.A697fs
LIHC	TCGA-DD-A39Y-01	TNPO1	ENST00000337273.5,ENST00000503084.1,ENST00000506351.2,ENST00000454282.1	chr5	72199535:72199610:72201129:72201272:72204535:72204740,	72201130	72201272	72201157	72201157	Frame_Shift_Del	G	-	p.G873fs
LIHC	TCGA-DD-A39Y-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000430046.2	chr5	72373164:72373320:72374006:72374139:72377609:72377809,	72374007	72374139	72374106	72374106	Frame_Shift_Del	T	-	p.A649fs
LIHC	TCGA-DD-A39Y-01	ARHGEF28	ENST00000426542.2,ENST00000287898.5,ENST00000296794.6,ENST00000513042.2,ENST00000545377.1,ENST00000437974.1	chr5	73045661:73045809:73048733:73049027:73069679:73069863,	73048734	73049027	73048872	73048872	Frame_Shift_Del	C	-	p.A107fs
LIHC	TCGA-DD-A39Y-01	ARHGEF28	ENST00000296799.4	chr5	73091155:73091216:73128162:73128284:73136304:73136585,73109342:73109498:73128162:73128284:73136304:73136585,	73128163	73128284	73128182	73128182	Frame_Shift_Del	A	-	p.L348fs
LIHC	TCGA-DD-A39Y-01	GFM2	ENST00000296805.3,ENST00000509430.1,ENST00000345239.2	chr5	74021765:74021951:74026084:74026223:74026426:74026600,74021765:74021951:74026084:74026223:74028846:74028923,	74026085	74026223	74026202	74026202	Frame_Shift_Del	C	-	p.E537fs
LIHC	TCGA-DD-A39Y-01	GFM2	ENST00000427854.2,ENST00000296805.3,ENST00000509430.1,ENST00000345239.2	chr5	74046403:74046492:74047192:74047318:74054673:74054771,	74047193	74047318	74047264	74047264	Frame_Shift_Del	C	-	p.G120fs
LIHC	TCGA-DD-A39Y-01	FAM169A	ENST00000389156.4	chr5	74100980:74101109:74109664:74109844:74130250:74130422,	74109665	74109844	74109825	74109825	Frame_Shift_Del	A	-	p.F170fs
LIHC	TCGA-DD-A39Y-01	HMGCR	ENST00000511206.1,ENST00000343975.5,ENST00000287936.4	chr5	74639677:74639789:74640069:74640157:74641398:74641483,	74640070	74640157	74640101	74640101	Frame_Shift_Del	T	-	p.S103fs
LIHC	TCGA-DD-A39Y-01	POLK	ENST00000514141.1	chr5	74886177:74886265:74889702:74889874:74892046:74893003,74882850:74882883:74889702:74889874:74892046:74893003,	74889703	74889874	74889747	74889747	Frame_Shift_Del	A	-	p.V467fs
LIHC	TCGA-DD-A39Y-01	POC5	ENST00000428202.2,ENST00000514838.2,ENST00000446329.2	chr5	74970255:74970403:74973598:74973775:74981031:74981193,	74973599	74973775	74973684	74973684	Frame_Shift_Del	T	-	p.N500fs
LIHC	TCGA-DD-A39Y-01	POC5	ENST00000428202.2,ENST00000514838.2,ENST00000446329.2	chr5	74973598:74973775:74981031:74981309:74984836:74984990,	74981032	74981309	74981285	74981285	Frame_Shift_Del	T	-	p.K385fs
LIHC	TCGA-DD-A39Y-01	POC5	ENST00000510798.1,ENST00000428202.2,ENST00000503835.1,ENST00000515285.1,ENST00000380475.2,ENST00000446329.2	chr5	74990576:74990656:74998429:74998635:75001528:75001612,	74998430	74998635	74998461	74998461	Frame_Shift_Del	T	-	p.N161fs
LIHC	TCGA-DD-A39Y-01	POC5	ENST00000510798.1,ENST00000428202.2,ENST00000503835.1,ENST00000515285.1,ENST00000380475.2,ENST00000446329.2	chr5	74990576:74990656:74998429:74998635:75001528:75001612,	74998430	74998635	74998581	74998581	Frame_Shift_Del	A	-	p.F121fs
LIHC	TCGA-DD-A39Y-01	SV2C	ENST00000502798.2,ENST00000322285.7	chr5	75591602:75591767:75594618:75594752:75596553:75596757,	75594619	75594752	75594738	75594738	Frame_Shift_Del	T	-	p.V541fs
LIHC	TCGA-DD-A39Y-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3,ENST00000505766.1	chr5	75970465:75970534:75973042:75973175:75978939:75979042,	75973043	75973175	75973156	75973156	Frame_Shift_Del	A	-	p.E1214fs
LIHC	TCGA-DD-A39Y-01	AGGF1	ENST00000312916.7	chr5	76332380:76332545:76335355:76335544:76342171:76342502,	76335356	76335544	76335488	76335488	Frame_Shift_Del	A	-	p.K273fs
LIHC	TCGA-DD-A39Y-01	PDE8B	ENST00000340978.3,ENST00000333194.4,ENST00000505283.1,ENST00000342343.4,ENST00000346042.3,ENST00000264917.5	chr5	76708935:76709134:76714053:76714271:76715591:76715712,	76714054	76714271	76714253	76714253	Frame_Shift_Del	T	-	p.I704fs
LIHC	TCGA-DD-A39Y-01	AP3B1	ENST00000522901.1,ENST00000519295.1,ENST00000255194.6	chr5	77311233:77311372:77316515:77316613:77330184:77330269,	77316516	77316613	77316529	77316529	Frame_Shift_Del	A	-	p.F993fs
LIHC	TCGA-DD-A39Y-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334929	77334929	Frame_Shift_Del	T	-	p.N916fs
LIHC	TCGA-DD-A39Y-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77335068	77335068	Frame_Shift_Del	T	-	p.T870fs
LIHC	TCGA-DD-A39Y-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77523967:77524063:77536685:77536760:77563343:77563419,	77536686	77536760	77536741	77536741	Frame_Shift_Del	T	-	p.N75fs
LIHC	TCGA-DD-A39Y-01	DMGDH	ENST00000524206.1,ENST00000255189.3	chr5	78347109:78347314:78350006:78350171:78351632:78351727,	78350007	78350171	78350125	78350125	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A39Y-01	BHMT	ENST00000274353.5,ENST00000523508.1	chr5	78416178:78416364:78417040:78417188:78421868:78422051,	78417041	78417188	78417152	78417152	Frame_Shift_Del	C	-	p.P198fs
LIHC	TCGA-DD-A39Y-01	ZCCHC9	ENST00000407610.3	chr5	80597459:80597874:80600559:80600960:80604379:80604530,80597442:80597489:80600559:80600960:80604379:80604471,80597480:80597517:80600559:80600960:80604379:80604471,	80600560	80600960	80600949	80600949	Frame_Shift_Del	A	-	p.K125fs
LIHC	TCGA-DD-A39Y-01	ACOT12	ENST00000307624.3	chr5	80641703:80641823:80643592:80643749:80655721:80655857,	80643593	80643749	80643662	80643662	Frame_Shift_Del	T	-	p.N195fs
LIHC	TCGA-DD-A39Y-01	ACOT12	ENST00000307624.3	chr5	80641703:80641823:80643592:80643749:80655721:80655857,	80643593	80643749	80643739	80643739	Frame_Shift_Del	A	-	p.F169fs
LIHC	TCGA-DD-A39Y-01	SSBP2	ENST00000507655.1,ENST00000505980.1,ENST00000506960.1,ENST00000504174.1,ENST00000509053.1,ENST00000320672.4,ENST00000512098.1,ENST00000509013.2,ENST00000515395.1,ENST00000514493.1	chr5	80911304:80911376:80932375:80932437:80946085:80946158,	80932376	80932437	80932421	80932421	Frame_Shift_Del	T	-	p.N51fs
LIHC	TCGA-DD-A39Y-01	XRCC4	ENST00000282268.3,ENST00000542685.1,ENST00000338635.6,ENST00000509268.1,ENST00000511817.1,ENST00000396027.4	chr5	82400728:82400877:82406846:82407022:82491588:82491755,	82406847	82407022	82406968	82406968	Frame_Shift_Del	T	-	p.N87fs
LIHC	TCGA-DD-A39Y-01	XRCC4	ENST00000282268.3,ENST00000542685.1,ENST00000338635.6,ENST00000509268.1,ENST00000511817.1,ENST00000396027.4	chr5	82406846:82407022:82491588:82491755:82499370:82499526,	82491589	82491755	82491739	82491739	Frame_Shift_Del	A	-	p.N156fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815218	82815218	Frame_Shift_Del	C	-	p.P365fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816109	82816109	Frame_Shift_Del	A	-	p.K662fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816528	82816528	Frame_Shift_Del	A	-	p.S801fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82817197	82817197	Frame_Shift_Del	A	-	p.T1024fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82817584	82817584	Frame_Shift_Del	T	-	p.S1153fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833863	82833863	Frame_Shift_Del	T	-	p.F1682fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835434	82835434	Frame_Shift_Del	T	-	p.H2204fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835675	82835675	Frame_Shift_Del	C	-	p.P2285fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835898	82835898	Frame_Shift_Del	A	-	p.Q2359fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836572	82836572	Frame_Shift_Del	A	-	p.K2584fs
LIHC	TCGA-DD-A39Y-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82837629	82837629	Frame_Shift_Del	C	-	p.T2936fs
LIHC	TCGA-DD-A39Y-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86667934:86668012:86669979:86670137:86670656:86670733,	86669980	86670137	86670027	86670027	Frame_Shift_Del	A	-	p.V431fs
LIHC	TCGA-DD-A39Y-01	TMEM161B	ENST00000506536.1	chr5	87492192:87492305:87494792:87494967:87498778:87498892,	87494793	87494967	87494795	87494795	Frame_Shift_Del	T	-	p.M363fs
LIHC	TCGA-DD-A39Y-01	TMEM161B	ENST00000511087.1	chr5	87516475:87516536:87521585:87521683:87524261:87524345,87517117:87517288:87521585:87521683:87524261:87524345,87517490:87517577:87521585:87521683:87524261:87524345,	87521586	87521683	87521612	87521612	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-DD-A39Y-01	MEF2C	ENST00000506716.1,ENST00000513252.1,ENST00000424173.2	chr5	88047682:88047860:88056804:88056942:88100414:88100618,	88056805	88056942	88056849	88056849	Frame_Shift_Del	T	-	p.I138fs
LIHC	TCGA-DD-A39Y-01	FAM172A	ENST00000502503.1,ENST00000509163.1,ENST00000395965.3	chr5	93159853:93159973:93217175:93217394:93300162:93300228,93159853:93159973:93217175:93217394:93294481:93294673,	93217176	93217394	93217200	93217200	Frame_Shift_Del	T	-	p.K254fs
LIHC	TCGA-DD-A39Y-01	FAM172A	ENST00000502503.1,ENST00000509739.1	chr5	93300162:93300228:93388830:93388932:93410350:93410425,	93388831	93388932	93388892	93388892	Frame_Shift_Del	T	-	p.K49fs
LIHC	TCGA-DD-A39Y-01	FAM172A	ENST00000502503.1	chr5	93388830:93388932:93410350:93410474:93447215:93447340,	93410351	93410474	93410373	93410373	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-DD-A39Y-01	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505208.1,ENST00000429576.2,ENST00000312216.8,ENST00000510732.1,ENST00000513695.1,ENST00000503301.1,ENST00000514780.1,ENST00000507214.1	chr5	94278097:94278131:94288922:94289065:94353070:94353188,	94288923	94289065	94289016	94289016	Frame_Shift_Del	A	-	p.F296fs
LIHC	TCGA-DD-A39Y-01	TTC37	ENST00000507805.1,ENST00000358746.2	chr5	94852849:94853026:94856419:94856522:94857757:94857790,	94856420	94856522	94856440	94856440	Frame_Shift_Del	T	-	p.K698fs
LIHC	TCGA-DD-A39Y-01	TTC37	ENST00000514952.1,ENST00000358746.2	chr5	94861290:94861377:94863716:94863856:94864704:94864806,	94863717	94863856	94863772	94863772	Frame_Shift_Del	A	-	p.L360fs
LIHC	TCGA-DD-A39Y-01	ARSK	ENST00000504873.1,ENST00000380009.4	chr5	94901701:94901831:94903593:94903753:94918619:94918902,	94903594	94903753	94903640	94903640	Frame_Shift_Del	T	-	p.N101fs
LIHC	TCGA-DD-A39Y-01	SPATA9	ENST00000477047.2,ENST00000274432.8,ENST00000316087.8	chr5	94999656:94999752:95011115:95011343:95018231:95018320,	95011116	95011343	95011130	95011130	Frame_Shift_Del	G	-	p.L122fs
LIHC	TCGA-DD-A39Y-01	SPATA9	ENST00000477047.2,ENST00000274432.8,ENST00000316087.8	chr5	94999656:94999752:95011115:95011343:95018231:95018320,	95011116	95011343	95011134	95011134	Frame_Shift_Del	T	-	p.Q120fs
LIHC	TCGA-DD-A39Y-01	RHOBTB3	ENST00000504949.1,ENST00000379982.3,ENST00000506959.1	chr5	95067659:95067788:95072592:95072779:95084036:95084145,	95072593	95072779	95072721	95072721	Frame_Shift_Del	A	-	p.I119fs
LIHC	TCGA-DD-A39Y-01	RHOBTB3	ENST00000510313.1,ENST00000379982.3,ENST00000504179.1	chr5	95103843:95103870:95115955:95116129:95119500:95119573,	95115956	95116129	95116093	95116093	Frame_Shift_Del	T	-	p.F474fs
LIHC	TCGA-DD-A39Y-01	ELL2	ENST00000237853.4	chr5	95236659:95236784:95242226:95242486:95249474:95249638,	95242227	95242486	95242260	95242260	Frame_Shift_Del	T	-	p.K236fs
LIHC	TCGA-DD-A39Y-01	PCSK1	ENST00000509190.1	chr5	95764916:95765021:95768566:95768760:95769769:95769847,	95768567	95768760	95768622	95768622	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A39Y-01	CAST	ENST00000359176.4,ENST00000514055.1,ENST00000506811.1,ENST00000508117.2,ENST00000338252.3,ENST00000505143.1,ENST00000510156.1,ENST00000508830.1,ENST00000341926.3,ENST00000395813.1,ENST00000421689.2	chr5	96058342:96058422:96062497:96062563:96063192:96063234,96058342:96058402:96062497:96062563:96063192:96063234,	96062498	96062563	96062546	96062546	Frame_Shift_Del	A	-	p.K108fs
LIHC	TCGA-DD-A39Y-01	CAST	ENST00000511049.1	chr5	96058342:96058402:96062457:96062563:96063192:96063234,	96062458	96062563	96062546	96062546	Frame_Shift_Del	A	-	p.K108fs
LIHC	TCGA-DD-A39Y-01	CAST	ENST00000504465.1,ENST00000506811.1,ENST00000309190.5,ENST00000338252.3,ENST00000512620.1,ENST00000505143.1,ENST00000325674.7,ENST00000511097.2,ENST00000508608.1,ENST00000510156.1,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000395813.1,ENST00000508197.1,ENST00000511049.1,ENST00000510756.1,ENST00000509903.1	chr5	96063192:96063234:96064856:96064913:96065315:96065395,	96064857	96064913	96064875	96064875	Frame_Shift_Del	A	-	p.K134fs
LIHC	TCGA-DD-A39Y-01	CAST	ENST00000338252.3,ENST00000325674.7,ENST00000511097.2,ENST00000348386.3,ENST00000515063.1,ENST00000509903.1	chr5	96076448:96076487:96076969:96077062:96077197:96077284,96075741:96075822:96076969:96077062:96077197:96077284,	96076970	96077062	96077055	96077055	Frame_Shift_Del	A	-	p.E335fs
LIHC	TCGA-DD-A39Y-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000338252.3,ENST00000325674.7,ENST00000508608.1,ENST00000510156.1,ENST00000348386.3,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000510098.1,ENST00000508579.1,ENST00000395813.1,ENST00000437034.2,ENST00000395812.2,ENST00000515663.1,ENST00000510756.1,ENST00000509903.1	chr5	96093289:96093358:96097977:96098076:96100927:96101029,96093289:96093358:96097977:96098076:96100924:96101029,	96097978	96098076	96098057	96098057	Frame_Shift_Del	C	-	p.A638fs
LIHC	TCGA-DD-A39Y-01	ERAP1	ENST00000508227.1	chr5	96136636:96136703:96139105:96139530:96143562:96143612,	96139106	96139530	96139137	96139137	Frame_Shift_Del	T	-	p.S165fs
LIHC	TCGA-DD-A39Y-01	ERAP1	ENST00000443439.2	chr5	96136636:96136703:96139105:96139646:96143562:96143612,	96139106	96139646	96139137	96139137	Frame_Shift_Del	T	-	p.S165fs
LIHC	TCGA-DD-A39Y-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96230949:96231063:96232076:96232208:96232435:96232566,	96232077	96232208	96232085	96232085	Frame_Shift_Del	T	-	p.Y416fs
LIHC	TCGA-DD-A39Y-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515387.1,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96232106:96232208:96232435:96232567:96235824:96235893,	96232436	96232567	96232481	96232481	Frame_Shift_Del	A	-	p.K473fs
LIHC	TCGA-DD-A39Y-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96314855	96314855	Frame_Shift_Del	C	-	p.L11fs
LIHC	TCGA-DD-A39Y-01	LNPEP	ENST00000231368.5,ENST00000395770.3	chr5	96360224:96360386:96362320:96362461:96363436:96363518,	96362321	96362461	96362399	96362399	Frame_Shift_Del	T	-	p.H934fs
LIHC	TCGA-DD-A39Y-01	CHD1	ENST00000512844.1	chr5	98194667:98194719:98195675:98195772:98199111:98199290,98194667:98194719:98195675:98195772:98204198:98204243,	98195676	98195772	98195691	98195691	Frame_Shift_Del	T	-	p.K1503fs
LIHC	TCGA-DD-A39Y-01	CHD1	ENST00000284049.3,ENST00000511628.1	chr5	98216982:98217079:98217678:98217827:98218791:98218941,	98217679	98217827	98217714	98217714	Frame_Shift_Del	C	-	p.G944fs
LIHC	TCGA-DD-A39Y-01	CHD1	ENST00000284049.3	chr5	98221281:98221353:98223791:98223944:98224779:98224942,	98223792	98223944	98223857	98223857	Frame_Shift_Del	A	-	p.S811fs
LIHC	TCGA-DD-A39Y-01	CHD1	ENST00000284049.3	chr5	98239495:98239612:98240600:98240802:98262037:98262240,	98240601	98240802	98240758	98240758	Frame_Shift_Del	C	-	p.G33fs
LIHC	TCGA-DD-A39Y-01	SLCO6A1	ENST00000379807.3,ENST00000514551.1,ENST00000389019.3,ENST00000506729.1	chr5	101755626:101755725:101774320:101774465:101794085:101794195,	101774321	101774465	101774421	101774421	Frame_Shift_Del	T	-	p.K392fs
LIHC	TCGA-DD-A39Y-01	PAM	ENST00000438793.3,ENST00000502472.1,ENST00000509636.1,ENST00000346918.2,ENST00000274392.9,ENST00000345721.2,ENST00000304400.7,ENST00000379787.4,ENST00000348126.2,ENST00000506260.1,ENST00000455264.2	chr5	102249637:102249725:102260660:102260746:102262288:102262372,	102260661	102260746	102260739	102260739	Frame_Shift_Del	C	-	p.L145fs
LIHC	TCGA-DD-A39Y-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1	chr5	102491612:102491698:102493891:102494017:102494155:102494277,	102493892	102494017	102493919	102493919	Frame_Shift_Del	T	-	p.L507fs
LIHC	TCGA-DD-A39Y-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1,ENST00000507966.3	chr5	102515721:102515889:102518934:102519108:102520372:102520445,	102518935	102519108	102518965	102518965	Frame_Shift_Del	G	-	p.E985fs
LIHC	TCGA-DD-A39Y-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1,ENST00000507966.3	chr5	102515721:102515889:102518934:102519108:102520372:102520445,	102518935	102519108	102518978	102518978	Frame_Shift_Del	C	-	p.T989fs
LIHC	TCGA-DD-A39Y-01	PPIP5K2	ENST00000321521.9,ENST00000414217.1	chr5	102520372:102520445:102522020:102522140:102523014:102523077,102520372:102520445:102522020:102522140:102526542:102526683,	102522021	102522140	102522110	102522110	Frame_Shift_Del	A	-	p.K1088fs
LIHC	TCGA-DD-A39Y-01	EFNA5	ENST00000509503.1	chr5	106723406:106723472:106762917:106763210:107006189:107006328,	106762918	106763210	106762963	106762963	Frame_Shift_Del	A	-	p.S125fs
LIHC	TCGA-DD-A39Y-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
LIHC	TCGA-DD-A39Y-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
LIHC	TCGA-DD-A39Y-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290538	108290538	Frame_Shift_Del	T	-	p.F480fs
LIHC	TCGA-DD-A39Y-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290538	108290538	Frame_Shift_Del	T	-	p.F480fs
LIHC	TCGA-DD-A39Y-01	PJA2	ENST00000361189.2,ENST00000511624.1,ENST00000361557.3	chr5	108714867:108714955:108717203:108717404:108719103:108719221,	108717204	108717404	108717370	108717370	Frame_Shift_Del	G	-	p.P22fs
LIHC	TCGA-DD-A39Y-01	MAN2A1	ENST00000261483.4	chr5	109051860:109051965:109065042:109065214:109091029:109091157,	109065043	109065214	109065167	109065167	Frame_Shift_Del	A	-	p.S220fs
LIHC	TCGA-DD-A39Y-01	MAN2A1	ENST00000261483.4	chr5	109103235:109103409:109106055:109106242:109110488:109110666,	109106056	109106242	109106189	109106189	Frame_Shift_Del	T	-	p.G381fs
LIHC	TCGA-DD-A39Y-01	MAN2A1	ENST00000261483.4	chr5	109178028:109178162:109181565:109181707:109183357:109183491,	109181566	109181707	109181686	109181686	Frame_Shift_Del	G	-	p.G941fs
LIHC	TCGA-DD-A39Y-01	DCP2	ENST00000513585.1,ENST00000389063.2,ENST00000543319.1	chr5	112343634:112343739:112346452:112346504:112349017:112349546,	112346453	112346504	112346499	112346499	Frame_Shift_Del	A	-	p.E365fs
LIHC	TCGA-DD-A39Y-01	YTHDC2	ENST00000515883.1,ENST00000161863.4,ENST00000503857.1	chr5	112874770:112874878:112876664:112876813:112878064:112878200,	112876665	112876813	112876710	112876710	Frame_Shift_Del	A	-	p.E419fs
LIHC	TCGA-DD-A39Y-01	KCNN2	ENST00000512097.3,ENST00000264773.3	chr5	113699602:113699698:113740134:113740553:113798745:113798887,	113740135	113740553	113740310	113740310	Frame_Shift_Del	A	-	p.D253fs
LIHC	TCGA-DD-A39Y-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114606944	114606944	Frame_Shift_Del	T	-	p.N433fs
LIHC	TCGA-DD-A39Y-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114606951	114606951	Frame_Shift_Del	T	-	p.R431fs
LIHC	TCGA-DD-A39Y-01	CCDC112	ENST00000379611.5,ENST00000506442.1,ENST00000395557.4	chr5	114612661:114612751:114615343:114615465:114620483:114620605,	114615344	114615465	114615416	114615416	Frame_Shift_Del	T	-	p.S97fs
LIHC	TCGA-DD-A39Y-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506058	118506058	Frame_Shift_Del	T	-	p.F1859fs
LIHC	TCGA-DD-A39Y-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506469	118506469	Frame_Shift_Del	A	-	p.K1996fs
LIHC	TCGA-DD-A39Y-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506677	118506677	Frame_Shift_Del	A	-	p.E2064fs
LIHC	TCGA-DD-A39Y-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506919	118506919	Frame_Shift_Del	G	-	p.G2146fs
LIHC	TCGA-DD-A39Y-01	SNCAIP	ENST00000542191.1,ENST00000512385.1,ENST00000508017.1,ENST00000379538.3,ENST00000515215.2,ENST00000510658.1	chr5	121726829:121726886:121739487:121739560:121767663:121767777,	121739488	121739560	121739514	121739514	Frame_Shift_Del	C	-	p.I75fs
LIHC	TCGA-DD-A39Y-01	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121758562:121759434:121767663:121767777,121739487:121739560:121758562:121759434:121761046:121761226,	121758563	121759434	121758754	121758754	Frame_Shift_Del	G	-	p.G156fs
LIHC	TCGA-DD-A39Y-01	CSNK1G3	ENST00000345990.4,ENST00000395411.1	chr5	122847953:122848264:122881110:122881535:122888800:122888841,	122881111	122881535	122881495	122881495	Frame_Shift_Del	A	-	p.G46fs
LIHC	TCGA-DD-A39Y-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123983920	123983920	Frame_Shift_Del	T	-	p.K719fs
LIHC	TCGA-DD-A39Y-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124080053	124080053	Frame_Shift_Del	G	-	p.S210fs
LIHC	TCGA-DD-A39Y-01	ALDH7A1	ENST00000409134.3,ENST00000497231.2,ENST00000503281.1	chr5	125891698:125891707:125894931:125895026:125896774:125896816,	125894932	125895026	125895002	125895002	Frame_Shift_Del	A	-	p.L313fs
LIHC	TCGA-DD-A39Y-01	PHAX	ENST00000297540.4,ENST00000511371.1	chr5	125944055:125944176:125952941:125953025:125960266:125960901,	125952942	125953025	125952973	125952973	Frame_Shift_Del	T	-	p.V288fs
LIHC	TCGA-DD-A39Y-01	LMNB1	ENST00000504788.1,ENST00000512460.1,ENST00000261366.5,ENST00000460265.1	chr5	126156601:126156827:126158472:126158577:126161679:126161799,	126158473	126158577	126158505	126158505	Frame_Shift_Del	A	-	p.R473fs
LIHC	TCGA-DD-A39Y-01	LMNB1	ENST00000504788.1,ENST00000261366.5,ENST00000460265.1	chr5	126158472:126158577:126161679:126161799:126168385:126168493,	126161680	126161799	126161712	126161712	Frame_Shift_Del	C	-	p.S508fs
LIHC	TCGA-DD-A39Y-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127622409:127622541:127622999:127623122:127624129:127624249,	127623000	127623122	127623064	127623064	Frame_Shift_Del	A	-	p.F2272fs
LIHC	TCGA-DD-A39Y-01	HINT1	ENST00000513345.1	chr5	130495296:130495304:130498264:130498369:130500752:130500913,	130498265	130498369	130498333	130498333	Frame_Shift_Del	T	-	p.T50fs
LIHC	TCGA-DD-A39Y-01	LYRM7	ENST00000510516.1	chr5	130506681:130506731:130515787:130515860:130517921:130517992,130506681:130506731:130515787:130515860:130535223:130535346,	130515788	130515860	130515831	130515831	Frame_Shift_Del	T	-	p.V21fs
LIHC	TCGA-DD-A39Y-01	CDC42SE2	ENST00000395246.1,ENST00000505065.1,ENST00000360515.3	chr5	130694901:130695240:130721235:130721337:130726685:130726801,	130721236	130721337	130721284	130721284	Frame_Shift_Del	T	-	p.F35fs
LIHC	TCGA-DD-A39Y-01	ACSL6	ENST00000379255.1,ENST00000379249.3,ENST00000379244.1,ENST00000296869.4,ENST00000431707.1,ENST00000413683.1,ENST00000379272.2,ENST00000543479.1,ENST00000493861.1,ENST00000544770.1,ENST00000379264.2,ENST00000357096.1,ENST00000379246.1,ENST00000379240.1	chr5	131296212:131296314:131298227:131298371:131302108:131302225,	131298228	131298371	131298340	131298340	Frame_Shift_Del	T	-	p.K582fs
LIHC	TCGA-DD-A39Y-01	P4HA2	ENST00000379104.2,ENST00000166534.4,ENST00000360568.3,ENST00000379086.1,ENST00000401867.1,ENST00000379100.2	chr5	131544830:131545024:131545976:131546216:131549608:131549746,	131545977	131546216	131546160	131546160	Frame_Shift_Del	C	-	p.A176fs
LIHC	TCGA-DD-A39Y-01	P4HA2	ENST00000379104.2,ENST00000417528.1,ENST00000395164.1,ENST00000166534.4,ENST00000360568.3,ENST00000379086.1,ENST00000401867.1,ENST00000439698.1,ENST00000379100.2,ENST00000431054.1	chr5	131546182:131546216:131549608:131549746:131552889:131553041,	131549609	131549746	131549676	131549676	Frame_Shift_Del	T	-	p.K134fs
LIHC	TCGA-DD-A39Y-01	PDLIM4	ENST00000253754.3,ENST00000379018.3,ENST00000418373.1	chr5	131602156:131602238:131606607:131606786:131606995:131607029,	131606608	131606786	131606779	131606779	Frame_Shift_Del	C	-	p.P168fs
LIHC	TCGA-DD-A39Y-01	IRF1	ENST00000437654.1	chr5	131822653:131822822:131825083:131825175:131826236:131826418,131823617:131823717:131825083:131825175:131826236:131826418,	131825084	131825175	131825102	131825102	Frame_Shift_Del	C	-	p.G23fs
LIHC	TCGA-DD-A39Y-01	SEPT8	ENST00000448933.1,ENST00000296873.7,ENST00000378706.1,ENST00000378721.4,ENST00000378699.2,ENST00000378701.1,ENST00000458488.2,ENST00000378719.2	chr5	132097192:132097318:132097491:132097588:132098175:132098337,	132097492	132097588	132097503	132097503	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-DD-A39Y-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232372	132232372	Frame_Shift_Del	G	-	p.S651fs
LIHC	TCGA-DD-A39Y-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232405	132232405	Frame_Shift_Del	T	-	p.K639fs
LIHC	TCGA-DD-A39Y-01	HSPA4	ENST00000304858.2	chr5	132435236:132435344:132437450:132437570:132439556:132439718,	132437451	132437570	132437558	132437558	Frame_Shift_Del	T	-	p.S715fs
LIHC	TCGA-DD-A39Y-01	HSPA4	ENST00000304858.2	chr5	132435236:132435344:132437450:132437570:132439556:132439718,	132437451	132437570	132437562	132437562	Frame_Shift_Del	A	-	p.K717fs
LIHC	TCGA-DD-A39Y-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316639	133316639	Frame_Shift_Del	T	-	p.N111fs
LIHC	TCGA-DD-A39Y-01	VDAC1	ENST00000466080.1,ENST00000395047.2,ENST00000395044.3,ENST00000265333.3,ENST00000425992.1	chr5	133326692:133326845:133327996:133328046:133328636:133328706,	133327997	133328046	133328017	133328017	Frame_Shift_Del	T	-	p.T33fs
LIHC	TCGA-DD-A39Y-01	VDAC1	ENST00000466080.1,ENST00000395047.2	chr5	133327996:133328046:133328636:133328709:133340337:133340383,	133328637	133328709	133328674	133328674	Frame_Shift_Del	A	-	p.L10fs
LIHC	TCGA-DD-A39Y-01	TCF7	ENST00000524342.1	chr5	133477906:133477995:133478411:133479168:133479282:133479331,	133478412	133479168	133478556	133478556	Frame_Shift_Del	C	-	p.N300fs
LIHC	TCGA-DD-A39Y-01	TCF7	ENST00000522653.1	chr5	133477906:133477995:133478411:133478791:133479282:133479331,	133478412	133478791	133478556	133478556	Frame_Shift_Del	C	-	p.N300fs
LIHC	TCGA-DD-A39Y-01	CDKL3	ENST00000523054.1	chr5	133685984:133686118:133695587:133695782:133706688:133706695,	133695588	133695782	133695766	133695766	Frame_Shift_Del	T	-	p.N61fs
LIHC	TCGA-DD-A39Y-01	SEC24A	ENST00000513123.1,ENST00000398844.2,ENST00000322887.4	chr5	134018062:134018172:134022479:134022592:134023870:134023989,	134022480	134022592	134022562	134022562	Frame_Shift_Del	T	-	p.V525fs
LIHC	TCGA-DD-A39Y-01	CAMLG	ENST00000297156.2	chr5	134074272:134074482:134079676:134079742:134086448:134087067,134077155:134077213:134079676:134079742:134086448:134087067,	134079677	134079742	134079692	134079692	Frame_Shift_Del	T	-	p.F217fs
LIHC	TCGA-DD-A39Y-01	DDX46	ENST00000452510.2,ENST00000354283.4	chr5	134102606:134102750:134106592:134106689:134109385:134109551,	134106593	134106689	134106642	134106642	Frame_Shift_Del	A	-	p.K135fs
LIHC	TCGA-DD-A39Y-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4	chr5	134106592:134106689:134109385:134109551:134113263:134113415,	134109386	134109551	134109464	134109464	Frame_Shift_Del	A	-	p.K177fs
LIHC	TCGA-DD-A39Y-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4,ENST00000503946.1,ENST00000507053.1	chr5	134154605:134154694:134162636:134162710:134164348:134164436,	134162637	134162710	134162660	134162660	Frame_Shift_Del	A	-	p.K1001fs
LIHC	TCGA-DD-A39Y-01	TXNDC15	ENST00000507024.1,ENST00000546290.1,ENST00000508779.1,ENST00000358387.4	chr5	134210065:134210220:134229181:134229345:134231983:134232114,134223842:134223872:134229181:134229345:134231983:134232114,	134229182	134229345	134229314	134229314	Frame_Shift_Del	T	-	p.F242fs
LIHC	TCGA-DD-A39Y-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000604555.1,ENST00000305126.8,ENST00000515433.1,ENST00000514554.1,ENST00000442011.2	chr5	135385204:135385269:135388595:135388808:135389631:135389724,	135388596	135388808	135388703	135388703	Frame_Shift_Del	G	-	p.G341fs
LIHC	TCGA-DD-A39Y-01	KLHL3	ENST00000309755.4,ENST00000394937.3,ENST00000508657.1	chr5	137033975:137034097:137045438:137045545:137056153:137056273,	137045439	137045545	137045490	137045490	Frame_Shift_Del	G	-	p.H32fs
LIHC	TCGA-DD-A39Y-01	GFRA3	ENST00000274721.3	chr5	137593327:137593640:137595245:137595338:137599949:137600237,	137595246	137595338	137595313	137595313	Frame_Shift_Del	G	-	p.P135fs
LIHC	TCGA-DD-A39Y-01	CDC25C	ENST00000348983.3,ENST00000415130.2	chr5	137627673:137627805:137654907:137655063:137661503:137661593,137627673:137627805:137654907:137655063:137664172:137664218,	137654908	137655063	137654967	137654967	Frame_Shift_Del	G	-	p.Q186fs
LIHC	TCGA-DD-A39Y-01	CDC25C	ENST00000503022.1,ENST00000513970.1,ENST00000323760.6	chr5	137654907:137655063:137661503:137661593:137664172:137664218,137654907:137655063:137661503:137661593:137661709:137661743,	137661504	137661593	137661562	137661562	Frame_Shift_Del	A	-	p.L134fs
LIHC	TCGA-DD-A39Y-01	KDM3B	ENST00000510866.1,ENST00000314358.5,ENST00000512928.1	chr5	137708481:137708530:137710781:137710895:137713408:137713514,	137710782	137710895	137710791	137710791	Frame_Shift_Del	C	-	p.P124fs
LIHC	TCGA-DD-A39Y-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137726897	137726897	Frame_Shift_Del	T	-	p.F527fs
LIHC	TCGA-DD-A39Y-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137728859:137729061:137733866:137734081:137735548:137735588,	137733867	137734081	137734018	137734018	Frame_Shift_Del	G	-	p.G995fs
LIHC	TCGA-DD-A39Y-01	HSPA9	ENST00000297185.3,ENST00000507097.1	chr5	137894241:137894346:137895552:137895780:137897268:137897478,	137895553	137895780	137895754	137895754	Frame_Shift_Del	A	-	p.F403fs
LIHC	TCGA-DD-A39Y-01	HSPA9	ENST00000297185.3,ENST00000507097.1,ENST00000504902.1	chr5	137903143:137903250:137903337:137903411:137904613:137904738,	137903338	137903411	137903384	137903384	Frame_Shift_Del	T	-	p.N188fs
LIHC	TCGA-DD-A39Y-01	CTNNA1	ENST00000517980.1,ENST00000523912.1,ENST00000518825.1,ENST00000520158.1,ENST00000519113.1,ENST00000522227.1,ENST00000302763.7	chr5	138117611:138117718:138118865:138119061:138145726:138145778,	138118866	138119061	138118896	138118896	Frame_Shift_Del	G	-	p.G46fs
LIHC	TCGA-DD-A39Y-01	CTNNA1	ENST00000517980.1,ENST00000523912.1,ENST00000518825.1,ENST00000520158.1,ENST00000519113.1,ENST00000522227.1,ENST00000302763.7	chr5	138117611:138117718:138118865:138119061:138145726:138145778,	138118866	138119061	138119054	138119054	Frame_Shift_Del	A	-	p.R98fs
LIHC	TCGA-DD-A39Y-01	CTNNA1	ENST00000540387.1,ENST00000518825.1,ENST00000355078.5,ENST00000521724.1,ENST00000302763.7	chr5	138240087:138240130:138253430:138253587:138260198:138260235,	138253431	138253587	138253498	138253498	Frame_Shift_Del	T	-	p.L486fs
LIHC	TCGA-DD-A39Y-01	PAIP2	ENST00000265192.4,ENST00000510409.1	chr5	138677607:138677669:138699447:138699611:138704421:138704487,138677550:138677669:138699447:138699611:138700252:138700429,	138699448	138699611	138699580	138699580	Frame_Shift_Del	G	-	p.W36fs
LIHC	TCGA-DD-A39Y-01	SLC23A1	ENST00000348729.3	chr5	138715644:138715765:138715896:138716078:138716253:138716296,	138715897	138716078	138715974	138715974	Frame_Shift_Del	G	-	p.P194fs
LIHC	TCGA-DD-A39Y-01	SLC23A1	ENST00000508270.1	chr5	138718180:138718294:138718906:138718968:138720046:138720242,	138718907	138718968	138718936	138718936	Frame_Shift_Del	C	-	p.A3fs
LIHC	TCGA-DD-A39Y-01	TMEM173	ENST00000510817.1,ENST00000512606.1,ENST00000330794.4	chr5	138860374:138860483:138860743:138860927:138861794:138861881,138860374:138860483:138860743:138860927:138861062:138861135,	138860744	138860927	138860866	138860866	Frame_Shift_Del	C	-	p.A97fs
LIHC	TCGA-DD-A39Y-01	TMEM173	ENST00000514119.1,ENST00000511850.1	chr5	138860374:138860483:138860743:138861289:138861794:138861881,	138860744	138861289	138860866	138860866	Frame_Shift_Del	C	-	p.A97fs
LIHC	TCGA-DD-A39Y-01	NRG2	ENST00000289422.7,ENST00000340391.3,ENST00000378238.4,ENST00000361474.1,ENST00000394770.1	chr5	139245133:139245210:139251305:139251426:139260440:139260559,	139251306	139251426	139251398	139251398	Frame_Shift_Del	C	-	p.G340fs
LIHC	TCGA-DD-A39Y-01	CYSTM1	ENST00000504227.1,ENST00000509589.1	chr5	139554772:139554870:139574030:139574237:139622889:139623048,	139574031	139574237	139574188	139574188	Frame_Shift_Del	C	-	p.Y46fs
LIHC	TCGA-DD-A39Y-01	SLC4A9	ENST00000506545.1	chr5	139745104:139745163:139745735:139745849:139747004:139747166,	139745736	139745849	139745801	139745801	Frame_Shift_Del	T	-	p.A679fs
LIHC	TCGA-DD-A39Y-01	SLC4A9	ENST00000507527.1,ENST00000506545.1,ENST00000432095.2,ENST00000230993.6,ENST00000506757.2	chr5	139747004:139747166:139747304:139747483:139748171:139748244,	139747305	139747483	139747450	139747450	Frame_Shift_Del	C	-	p.A798fs
LIHC	TCGA-DD-A39Y-01	APBB3	ENST00000356738.2,ENST00000354402.5,ENST00000515056.1,ENST00000412920.3,ENST00000357560.4,ENST00000511896.1,ENST00000509914.1,ENST00000510241.1,ENST00000467078.1,ENST00000508496.2	chr5	139939985:139940089:139940223:139940339:139940602:139940686,	139940224	139940339	139940292	139940292	Frame_Shift_Del	C	-	p.D322fs
LIHC	TCGA-DD-A39Y-01	NDUFA2	ENST00000252102.4	chr5	140025213:140025263:140026840:140026947:140027067:140027230,	140026841	140026947	140026850	140026850	Frame_Shift_Del	C	-	p.A67fs
LIHC	TCGA-DD-A39Y-01	RELL2	ENST00000518025.1	chr5	141018361:141018427:141019030:141019216:141019486:141019569,	141019031	141019216	141019102	141019102	Frame_Shift_Del	C	-	p.A130fs
LIHC	TCGA-DD-A39Y-01	RELL2	ENST00000520674.1	chr5	141019030:141019216:141019486:141019862:141019978:141020012,141018361:141018427:141019486:141019862:141019978:141020012,	141019487	141019862	141019650	141019650	Frame_Shift_Del	C	-	p.P224fs
LIHC	TCGA-DD-A39Y-01	FCHSD1	ENST00000522126.1,ENST00000523856.1,ENST00000435817.2,ENST00000518499.1	chr5	141024586:141024715:141025337:141025499:141025653:141025758,	141025338	141025499	141025454	141025454	Frame_Shift_Del	C	-	p.A399fs
LIHC	TCGA-DD-A39Y-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243165	141243165	Frame_Shift_Del	T	-	p.S911fs
LIHC	TCGA-DD-A39Y-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243711	141243711	Frame_Shift_Del	G	-	p.Q729fs
LIHC	TCGA-DD-A39Y-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243922	141243922	Frame_Shift_Del	A	-	p.F658fs
LIHC	TCGA-DD-A39Y-01	RNF14	ENST00000394514.2	chr5	141350268:141350442:141353147:141353307:141357867:141357959,	141353148	141353307	141353260	141353260	Frame_Shift_Del	C	-	p.T36fs
LIHC	TCGA-DD-A39Y-01	RNF14	ENST00000515613.1	chr5	141357867:141358395:141359687:141359916:141362944:141363117,141354368:141354520:141359687:141359916:141362944:141363117,141353147:141353307:141359687:141359916:141362944:141363117,	141359688	141359916	141359780	141359780	Frame_Shift_Del	C	-	p.C309fs
LIHC	TCGA-DD-A39Y-01	ARHGAP26	ENST00000274498.4,ENST00000475287.1,ENST00000378004.3	chr5	142264862:142264964:142273802:142273913:142281499:142281578,	142273803	142273913	142273896	142273896	Frame_Shift_Del	T	-	p.F194fs
LIHC	TCGA-DD-A39Y-01	ARHGAP26	ENST00000274498.4,ENST00000378004.3	chr5	142281499:142281604:142283104:142283234:142287268:142287369,	142283105	142283234	142283153	142283153	Frame_Shift_Del	A	-	p.K252fs
LIHC	TCGA-DD-A39Y-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586440	143586440	Frame_Shift_Del	T	-	p.F55fs
LIHC	TCGA-DD-A39Y-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586730	143586730	Frame_Shift_Del	C	-	p.C151fs
LIHC	TCGA-DD-A39Y-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586936	143586936	Frame_Shift_Del	A	-	p.E220fs
LIHC	TCGA-DD-A39Y-01	PRELID2	ENST00000511435.1,ENST00000334744.4,ENST00000358004.2,ENST00000505416.1,ENST00000515475.1	chr5	145199507:145199581:145202639:145202697:145214739:145214796,	145202640	145202697	145202643	145202643	Frame_Shift_Del	T	-	p.R44fs
LIHC	TCGA-DD-A39Y-01	SH3RF2	ENST00000511705.1	chr5	145435543:145435776:145439428:145439787:145441988:145442297,145435543:145435794:145439428:145439787:145441988:145442297,	145439429	145439787	145439647	145439647	Frame_Shift_Del	T	-	p.W592fs
LIHC	TCGA-DD-A39Y-01	LARS	ENST00000545646.1,ENST00000274562.9,ENST00000510191.1,ENST00000394434.2	chr5	145531424:145531565:145532736:145532790:145533296:145533373,	145532737	145532790	145532743	145532743	Frame_Shift_Del	A	-	p.F426fs
LIHC	TCGA-DD-A39Y-01	LARS	ENST00000511505.1,ENST00000545646.1,ENST00000274562.9,ENST00000505223.1	chr5	145552253:145552337:145557109:145557228:145562050:145562083,	145557110	145557228	145557118	145557118	Frame_Shift_Del	T	-	p.K39fs
LIHC	TCGA-DD-A39Y-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145609279:145609473:145610219:145610480:145613012:145613306,	145610220	145610480	145610299	145610299	Frame_Shift_Del	A	-	p.P223fs
LIHC	TCGA-DD-A39Y-01	TCERG1	ENST00000549332.1,ENST00000394421.2,ENST00000296702.5	chr5	145826908:145826971:145834618:145834844:145836745:145836898,	145834619	145834844	145834659	145834659	Frame_Shift_Del	C	-	p.P36fs
LIHC	TCGA-DD-A39Y-01	DPYSL3	ENST00000519672.1,ENST00000343218.5,ENST00000398514.3	chr5	146788290:146788359:146792170:146792251:146793158:146793220,	146792171	146792251	146792215	146792215	Frame_Shift_Del	C	-	p.A307fs
LIHC	TCGA-DD-A39Y-01	SPINK5	ENST00000398454.1,ENST00000256084.7,ENST00000359874.3	chr5	147499857:147499954:147503395:147503523:147504327:147504400,	147503396	147503523	147503411	147503411	Frame_Shift_Del	T	-	p.F852fs
LIHC	TCGA-DD-A39Y-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147806940	147806940	Frame_Shift_Del	A	-	p.K696fs
LIHC	TCGA-DD-A39Y-01	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147806940	147806940	Frame_Shift_Del	A	-	p.K696fs
LIHC	TCGA-DD-A39Y-01	ABLIM3	ENST00000504238.1,ENST00000356541.3,ENST00000515171.1	chr5	148612815:148612863:148619321:148619451:148624443:148624578,	148619322	148619451	148619410	148619410	Frame_Shift_Del	C	-	p.S388fs
LIHC	TCGA-DD-A39Y-01	AFAP1L1	ENST00000515000.1,ENST00000455574.2,ENST00000296721.4	chr5	148681980:148682089:148685868:148685967:148686964:148687080,	148685869	148685967	148685930	148685930	Frame_Shift_Del	C	-	p.Y166fs
LIHC	TCGA-DD-A39Y-01	CSNK1A1	ENST00000504676.1,ENST00000261798.5,ENST00000515768.1,ENST00000515435.1,ENST00000503350.2,ENST00000377843.2,ENST00000606826.1,ENST00000606719.1	chr5	148886589:148886696:148889441:148889516:148891356:148891435,	148889442	148889516	148889476	148889476	Frame_Shift_Del	T	-	p.K240fs
LIHC	TCGA-DD-A39Y-01	ARHGEF37	ENST00000333677.6	chr5	149003574:149003703:149006638:149006834:149008371:149008529,	149006639	149006834	149006760	149006760	Frame_Shift_Del	G	-	p.R529fs
LIHC	TCGA-DD-A39Y-01	HMGXB3	ENST00000502717.1,ENST00000503427.1	chr5	149386035:149386210:149389673:149390171:149391817:149391916,	149389674	149390171	149389864	149389864	Frame_Shift_Del	C	-	p.A168fs
LIHC	TCGA-DD-A39Y-01	HMGXB3	ENST00000502717.1,ENST00000503427.1	chr5	149391817:149391916:149398128:149398260:149403824:149403971,	149398129	149398260	149398236	149398236	Frame_Shift_Del	C	-	p.F339fs
LIHC	TCGA-DD-A39Y-01	CAMK2A	ENST00000351010.6,ENST00000398376.3,ENST00000348628.6	chr5	149607754:149607849:149610867:149610943:149618262:149618311,	149610868	149610943	149610921	149610921	Frame_Shift_Del	T	-	p.K352fs
LIHC	TCGA-DD-A39Y-01	CAMK2A	ENST00000510347.1,ENST00000398376.3,ENST00000348628.6	chr5	149637125:149637180:149644518:149644578:149652627:149652722,	149644519	149644578	149644526	149644526	Frame_Shift_Del	G	-	p.P70fs
LIHC	TCGA-DD-A39Y-01	TCOF1	ENST00000377797.3,ENST00000515035.1,ENST00000513346.1,ENST00000451292.1,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149749091:149749165:149751568:149751799:149753736:149753949,	149751569	149751799	149751692	149751692	Frame_Shift_Del	G	-	p.G255fs
LIHC	TCGA-DD-A39Y-01	TCOF1	ENST00000377797.3,ENST00000515035.1,ENST00000513346.1,ENST00000451292.1,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149749091:149749165:149751568:149751799:149753736:149753949,	149751569	149751799	149751701	149751701	Frame_Shift_Del	C	-	p.P259fs
LIHC	TCGA-DD-A39Y-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000514442.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149754516:149754726:149754901:149755117:149755283:149755472,	149754902	149755117	149754917	149754917	Frame_Shift_Del	A	-	p.K502fs
LIHC	TCGA-DD-A39Y-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000427724.2	chr5	149772985:149773115:149775844:149776405:149777916:149777932,	149775845	149776405	149776164	149776164	Frame_Shift_Del	G	-	p.L1404fs
LIHC	TCGA-DD-A39Y-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000427724.2	chr5	149772985:149773115:149775844:149776405:149777916:149777932,	149775845	149776405	149776196	149776196	Frame_Shift_Del	C	-	p.S1415fs
LIHC	TCGA-DD-A39Y-01	CD74	ENST00000517791.1	chr5	149785821:149785884:149786443:149786887:149792187:149792295,	149786444	149786887	149786455	149786455	Frame_Shift_Del	G	-	p.L123fs
LIHC	TCGA-DD-A39Y-01	CD74	ENST00000353334.6,ENST00000518797.1,ENST00000524315.1,ENST00000523208.1,ENST00000523836.1,ENST00000377795.3,ENST00000517752.1,ENST00000009530.7	chr5	149785821:149785884:149786443:149786523:149786714:149786742,	149786444	149786523	149786455	149786455	Frame_Shift_Del	G	-	p.L123fs
LIHC	TCGA-DD-A39Y-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028531	150028531	Frame_Shift_Del	C	-	p.P477fs
LIHC	TCGA-DD-A39Y-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028657	150028657	Frame_Shift_Del	C	-	p.P519fs
LIHC	TCGA-DD-A39Y-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028706	150028706	Frame_Shift_Del	C	-	p.S534fs
LIHC	TCGA-DD-A39Y-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922633	150922633	Frame_Shift_Del	T	-	p.K2685fs
LIHC	TCGA-DD-A39Y-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922719	150922719	Frame_Shift_Del	G	-	p.L2657fs
LIHC	TCGA-DD-A39Y-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924388	150924388	Frame_Shift_Del	C	-	p.G2100fs
LIHC	TCGA-DD-A39Y-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150924558	150924558	Frame_Shift_Del	C	-	p.D2044fs
LIHC	TCGA-DD-A39Y-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150925144	150925144	Frame_Shift_Del	A	-	p.P1848fs
LIHC	TCGA-DD-A39Y-01	FAT2	ENST00000261800.5	chr5	150932737:150932948:150933922:150934234:150935904:150935963,	150933923	150934234	150934213	150934213	Frame_Shift_Del	C	-	p.E1219fs
LIHC	TCGA-DD-A39Y-01	GRIA1	ENST00000448073.4,ENST00000340592.5,ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153078426:153078633:153085256:153085627:153143993:153144192,	153085257	153085627	153085300	153085300	Frame_Shift_Del	G	-	p.R499fs
LIHC	TCGA-DD-A39Y-01	GRIA1	ENST00000448073.4,ENST00000340592.5,ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153078426:153078633:153085256:153085627:153143993:153144192,	153085257	153085627	153085303	153085303	Frame_Shift_Del	A	-	p.E501fs
LIHC	TCGA-DD-A39Y-01	FAM114A2	ENST00000520667.1,ENST00000351797.4,ENST00000520313.1,ENST00000522858.1	chr5	153382406:153382529:153390800:153390880:153405958:153406082,	153390801	153390880	153390867	153390867	Frame_Shift_Del	A	-	p.F309fs
LIHC	TCGA-DD-A39Y-01	FAM114A2	ENST00000520667.1,ENST00000351797.4,ENST00000522395.1,ENST00000520313.1,ENST00000518900.1,ENST00000523705.1,ENST00000522858.1	chr5	153407839:153407843:153409048:153409140:153413350:153413437,	153409049	153409140	153409124	153409124	Frame_Shift_Del	T	-	p.K140fs
LIHC	TCGA-DD-A39Y-01	MFAP3	ENST00000436816.1	chr5	153418533:153418571:153429116:153429577:153432479:153432512,	153429117	153429577	153429339	153429339	Frame_Shift_Del	T	-	p.A19fs
LIHC	TCGA-DD-A39Y-01	GALNT10	ENST00000425427.2,ENST00000297107.6	chr5	153709131:153709298:153755836:153756022:153760007:153760191,	153755837	153756022	153755937	153755937	Frame_Shift_Del	G	-	p.L223fs
LIHC	TCGA-DD-A39Y-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173399	154173399	Frame_Shift_Del	C	-	p.T226fs
LIHC	TCGA-DD-A39Y-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173399	154173399	Frame_Shift_Del	C	-	p.T226fs
LIHC	TCGA-DD-A39Y-01	GEMIN5	ENST00000285873.7	chr5	154278750:154278870:154280898:154281046:154282098:154282236,	154280899	154281046	154280991	154280991	Frame_Shift_Del	A	-	p.F974fs
LIHC	TCGA-DD-A39Y-01	TIMD4	ENST00000274532.2	chr5	156353273:156353323:156375426:156375510:156376661:156376742,	156375427	156375510	156375460	156375460	Frame_Shift_Del	T	-	p.T271fs
LIHC	TCGA-DD-A39Y-01	HAVCR1	ENST00000339252.3,ENST00000522693.1,ENST00000523175.1,ENST00000544197.1,ENST00000517644.1,ENST00000425854.1	chr5	156464257:156464372:156469637:156469693:156476048:156476153,	156469638	156469693	156469655	156469655	Frame_Shift_Del	A	-	p.W274fs
LIHC	TCGA-DD-A39Y-01	ADAM19	ENST00000257527.4,ENST00000517374.1,ENST00000517905.1,ENST00000517951.1,ENST00000430702.2,ENST00000394020.1	chr5	156918622:156918731:156918842:156918920:156919980:156920185,	156918843	156918920	156918891	156918891	Frame_Shift_Del	G	-	p.T646fs
LIHC	TCGA-DD-A39Y-01	SOX30	ENST00000265007.6	chr5	157073644:157073824:157075664:157075904:157078119:157079372,	157075665	157075904	157075697	157075697	Frame_Shift_Del	T	-	p.K392fs
LIHC	TCGA-DD-A39Y-01	TTC1	ENST00000231238.5	chr5	159436119:159436200:159437506:159437865:159462146:159462207,	159437507	159437865	159437644	159437644	Frame_Shift_Del	A	-	p.K37fs
LIHC	TCGA-DD-A39Y-01	ATP10B	ENST00000326831.3	chr5	160076177:160076263:160097469:160097674:160111841:160112392,	160097470	160097674	160097568	160097568	Frame_Shift_Del	A	-	p.S194fs
LIHC	TCGA-DD-A39Y-01	MAT2B	ENST00000421814.2,ENST00000523606.1,ENST00000280969.5,ENST00000518095.1,ENST00000321757.6	chr5	162940573:162940675:162940847:162941000:162943523:162943621,	162940848	162941000	162940952	162940952	Frame_Shift_Del	G	-	p.G160fs
LIHC	TCGA-DD-A39Y-01	MAT2B	ENST00000421814.2,ENST00000523606.1,ENST00000280969.5,ENST00000518095.1,ENST00000321757.6	chr5	162940573:162940675:162940847:162941000:162943523:162943621,	162940848	162941000	162940974	162940974	Frame_Shift_Del	A	-	p.E167fs
LIHC	TCGA-DD-A39Y-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167836926:167837000:167841352:167841595:167849012:167849053,	167841353	167841595	167841405	167841405	Frame_Shift_Del	G	-	p.G332fs
LIHC	TCGA-DD-A39Y-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167849012:167849102:167850537:167851073:167855037:167855146,	167850538	167851073	167850894	167850894	Frame_Shift_Del	C	-	p.S544fs
LIHC	TCGA-DD-A39Y-01	WWC1	ENST00000521089.1	chr5	167887654:167887747:167891715:167891967:167894847:167894969,167887654:167887747:167891715:167891967:167894844:167894893,	167891716	167891967	167891720	167891720	Frame_Shift_Del	C	-	p.S974fs
LIHC	TCGA-DD-A39Y-01	RARS	ENST00000231572.3,ENST00000521939.1,ENST00000519346.1,ENST00000521329.1	chr5	167915696:167915741:167919663:167919852:167920898:167920963,	167919664	167919852	167919694	167919694	Frame_Shift_Del	A	-	p.K71fs
LIHC	TCGA-DD-A39Y-01	RARS	ENST00000522834.1	chr5	167915696:167915741:167919663:167919796:167920898:167920963,	167919664	167919796	167919694	167919694	Frame_Shift_Del	A	-	p.K71fs
LIHC	TCGA-DD-A39Y-01	RARS	ENST00000231572.3,ENST00000521939.1,ENST00000519346.1	chr5	167919663:167919852:167920898:167921007:167921554:167921655,	167920899	167921007	167920993	167920993	Frame_Shift_Del	A	-	p.E155fs
LIHC	TCGA-DD-A39Y-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937649	167937649	Frame_Shift_Del	A	-	p.L470fs
LIHC	TCGA-DD-A39Y-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937675	167937675	Frame_Shift_Del	A	-	p.E479fs
LIHC	TCGA-DD-A39Y-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167943782:167943955:167944819:167945067:167946085:167946303,	167944820	167945067	167944861	167944861	Frame_Shift_Del	A	-	p.Q556fs
LIHC	TCGA-DD-A39Y-01	PANK3	ENST00000239231.6	chr5	167988397:167988521:167990893:167991070:167993017:167993069,	167990894	167991070	167991047	167991047	Frame_Shift_Del	C	-	p.G220fs
LIHC	TCGA-DD-A39Y-01	SPDL1	ENST00000265295.4,ENST00000507232.1	chr5	169025479:169025583:169025975:169026163:169028283:169028629,	169025976	169026163	169026147	169026147	Frame_Shift_Del	A	-	p.L436fs
LIHC	TCGA-DD-A39Y-01	KCNIP1	ENST00000434108.1	chr5	170147324:170147394:170148761:170148907:170149716:170149824,	170148762	170148907	170148852	170148852	Frame_Shift_Del	C	-	p.A91fs
LIHC	TCGA-DD-A39Y-01	KCNIP1	ENST00000520740.1,ENST00000390656.4,ENST00000377360.4,ENST00000411494.1,ENST00000328939.4	chr5	170147324:170147394:170148836:170148907:170149716:170149824,	170148837	170148907	170148852	170148852	Frame_Shift_Del	C	-	p.A91fs
LIHC	TCGA-DD-A39Y-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000521759.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170640634:170640742:170648761:170648844:170667931:170668146,	170648762	170648844	170648833	170648833	Frame_Shift_Del	T	-	p.V804fs
LIHC	TCGA-DD-A39Y-01	FBXW11	ENST00000296933.6,ENST00000523843.1,ENST00000393802.2,ENST00000265094.5,ENST00000522891.1,ENST00000425623.2	chr5	171305014:171305133:171318470:171318608:171326007:171326098,	171318471	171318608	171318503	171318503	Frame_Shift_Del	T	-	p.I241fs
LIHC	TCGA-DD-A39Y-01	FBXW11	ENST00000523843.1,ENST00000425623.2	chr5	171337737:171337801:171341346:171341409:171384600:171384702,171337737:171337801:171341346:171341409:171423893:171423991,	171341347	171341409	171341369	171341369	Frame_Shift_Del	G	-	p.P29fs
LIHC	TCGA-DD-A39Y-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171800793:171800819:171809039:171809131:171821566:171821643,	171809040	171809131	171809111	171809111	Frame_Shift_Del	G	-	p.P110fs
LIHC	TCGA-DD-A39Y-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172513503:172513629:172517317:172518404:172535626:172535821,	172517318	172518404	172517650	172517650	Frame_Shift_Del	C	-	p.Y156fs
LIHC	TCGA-DD-A39Y-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172513503:172513629:172517317:172518404:172535626:172535821,	172517318	172518404	172518173	172518173	Frame_Shift_Del	A	-	p.K332fs
LIHC	TCGA-DD-A39Y-01	SFXN1	ENST00000321442.5,ENST00000507823.1	chr5	174943616:174943666:174948921:174948971:174949377:174949425,	174948922	174948971	174948927	174948927	Frame_Shift_Del	C	-	p.F260fs
LIHC	TCGA-DD-A39Y-01	THOC3	ENST00000265097.4,ENST00000511062.1,ENST00000514250.1,ENST00000510300.1,ENST00000513482.1	chr5	175388422:175388437:175391953:175392158:175394113:175394270,	175391954	175392158	175392156	175392156	Frame_Shift_Del	C	-	p.E143fs
LIHC	TCGA-DD-A39Y-01	FAM153B	ENST00000508296.1,ENST00000510151.1,ENST00000253490.4,ENST00000393522.4,ENST00000515817.1,ENST00000512862.1,ENST00000503533.1	chr5	175516465:175516524:175517372:175517397:175520197:175520277,	175517373	175517397	175517379	175517379	Frame_Shift_Del	A	-	p.K81fs
LIHC	TCGA-DD-A39Y-01	RNF44	ENST00000274811.4	chr5	175958463:175958631:175959004:175959194:175959366:175959517,	175959005	175959194	175959175	175959175	Frame_Shift_Del	G	-	p.L43fs
LIHC	TCGA-DD-A39Y-01	UIMC1	ENST00000377227.4,ENST00000512031.1,ENST00000506128.1,ENST00000511320.1	chr5	176335633:176335695:176338311:176338390:176370335:176370489,	176338312	176338390	176338344	176338344	Frame_Shift_Del	C	-	p.G549fs
LIHC	TCGA-DD-A39Y-01	UIMC1	ENST00000377219.2	chr5	176335633:176335695:176338311:176338393:176370335:176370489,	176338312	176338393	176338344	176338344	Frame_Shift_Del	C	-	p.G549fs
LIHC	TCGA-DD-A39Y-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000511320.1	chr5	176385093:176385155:176395555:176396292:176396601:176396707,	176395556	176396292	176395590	176395590	Frame_Shift_Del	A	-	p.L390fs
LIHC	TCGA-DD-A39Y-01	UIMC1	ENST00000506128.1	chr5	176385093:176385155:176396053:176396292:176396601:176396707,	176396054	176396292	176396191	176396191	Frame_Shift_Del	T	-	p.T189fs
LIHC	TCGA-DD-A39Y-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000511320.1	chr5	176385093:176385155:176395555:176396292:176396601:176396707,	176395556	176396292	176396191	176396191	Frame_Shift_Del	T	-	p.T189fs
LIHC	TCGA-DD-A39Y-01	ZNF346	ENST00000503039.1,ENST00000512315.1	chr5	176489058:176489152:176491512:176491602:176506382:176507555,	176491513	176491602	176491519	176491519	Frame_Shift_Del	A	-	p.P293fs
LIHC	TCGA-DD-A39Y-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176636646	176636646	Frame_Shift_Del	A	-	p.K416fs
LIHC	TCGA-DD-A39Y-01	F12	ENST00000253496.3	chr5	176832323:176832434:176832735:176832806:176832962:176833062,	176832736	176832806	176832791	176832791	Frame_Shift_Del	G	-	p.P77fs
LIHC	TCGA-DD-A39Y-01	GRK6	ENST00000506296.1,ENST00000508705.1,ENST00000507633.1,ENST00000393576.3,ENST00000528793.1,ENST00000515666.1,ENST00000355472.5,ENST00000355958.5	chr5	176860147:176860240:176860347:176860411:176860536:176860666,	176860348	176860411	176860406	176860406	Frame_Shift_Del	G	-	p.G198fs
LIHC	TCGA-DD-A39Y-01	DBN1	ENST00000477391.2,ENST00000309007.5,ENST00000393565.1,ENST00000292385.5	chr5	176894255:176894333:176894481:176894628:176894743:176894818,	176894482	176894628	176894531	176894531	Frame_Shift_Del	G	-	p.P145fs
LIHC	TCGA-DD-A39Y-01	FAM193B	ENST00000443375.2,ENST00000524677.1	chr5	176952197:176952206:176958282:176958522:176959443:176959534,	176958283	176958522	176958287	176958287	Frame_Shift_Del	T	-	p.K51fs
LIHC	TCGA-DD-A39Y-01	FAM193B	ENST00000329540.5,ENST00000443375.2,ENST00000506955.1,ENST00000514747.1	chr5	176959443:176959642:176963358:176963746:176964873:176965020,	176963359	176963746	176963531	176963531	Frame_Shift_Del	G	-	p.H189fs
LIHC	TCGA-DD-A39Y-01	HNRNPAB	ENST00000504898.1,ENST00000358344.3	chr5	177634094:177634226:177636330:177636448:177637132:177637273,	177636331	177636448	177636388	177636388	Frame_Shift_Del	G	-	p.G244fs
LIHC	TCGA-DD-A39Y-01	HNRNPAB	ENST00000506339.1	chr5	177634094:177634226:177636330:177636433:177637132:177637273,	177636331	177636433	177636388	177636388	Frame_Shift_Del	G	-	p.G244fs
LIHC	TCGA-DD-A39Y-01	COL23A1	ENST00000390654.3	chr5	177674526:177674553:177674775:177674832:177675192:177675255,	177674776	177674832	177674804	177674804	Frame_Shift_Del	G	-	p.P414fs
LIHC	TCGA-DD-A39Y-01	CLK4	ENST00000521621.1,ENST00000519583.1,ENST00000520878.1,ENST00000316308.4	chr5	178030844:178030935:178032303:178032383:178035376:178035459,	178032304	178032383	178032333	178032333	Frame_Shift_Del	G	-	p.P395fs
LIHC	TCGA-DD-A39Y-01	RUFY1	ENST00000377001.2,ENST00000502984.1,ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1,ENST00000393448.2	chr5	178989631:178989665:178994461:178994563:178996302:178996383,	178994462	178994563	178994509	178994509	Frame_Shift_Del	A	-	p.Q217fs
LIHC	TCGA-DD-A39Y-01	RUFY1	ENST00000377001.2,ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000508609.1,ENST00000393448.2,ENST00000502434.1	chr5	179018625:179018742:179020478:179020646:179021866:179021899,	179020479	179020646	179020486	179020486	Frame_Shift_Del	A	-	p.E418fs
LIHC	TCGA-DD-A39Y-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000502673.1,ENST00000512607.2,ENST00000452673.2	chr5	179135978:179136060:179136873:179137066:179143105:179143202,	179136874	179137066	179136964	179136964	Frame_Shift_Del	A	-	p.K207fs
LIHC	TCGA-DD-A39Y-01	CANX	ENST00000503126.1	chr5	179135978:179136060:179136919:179137066:179143105:179143202,	179136920	179137066	179136964	179136964	Frame_Shift_Del	A	-	p.K207fs
LIHC	TCGA-DD-A39Y-01	MGAT4B	ENST00000518867.1,ENST00000518980.1,ENST00000518702.1,ENST00000292591.7,ENST00000520918.1,ENST00000523382.1,ENST00000518778.1,ENST00000337755.5,ENST00000519836.1,ENST00000523108.1	chr5	179227183:179227259:179227483:179227597:179227906:179227928,	179227484	179227597	179227545	179227545	Frame_Shift_Del	G	-	p.H235fs
LIHC	TCGA-DD-A39Y-01	SQSTM1	ENST00000389805.4,ENST00000402874.3,ENST00000376929.3,ENST00000360718.5	chr5	179252145:179252226:179260031:179260246:179260586:179260782,	179260032	179260246	179260153	179260153	Frame_Shift_Del	C	-	p.D292fs
LIHC	TCGA-DD-A39Y-01	TBC1D9B	ENST00000522180.1,ENST00000444477.2,ENST00000519746.1,ENST00000519757.1,ENST00000356834.3,ENST00000521469.1,ENST00000355235.3	chr5	179296768:179296834:179297254:179297495:179298461:179298501,	179297255	179297495	179297273	179297273	Frame_Shift_Del	C	-	p.E903fs
LIHC	TCGA-DD-A39Y-01	TBC1D9B	ENST00000522180.1,ENST00000444477.2,ENST00000519746.1,ENST00000519757.1,ENST00000356834.3,ENST00000521469.1,ENST00000355235.3	chr5	179296768:179296834:179297254:179297495:179298461:179298501,	179297255	179297495	179297299	179297299	Frame_Shift_Del	T	-	p.N894fs
LIHC	TCGA-DD-A39Y-01	TBC1D9B	ENST00000356834.3,ENST00000355235.3	chr5	179306046:179306197:179306627:179306789:179315102:179315192,	179306628	179306789	179306735	179306735	Frame_Shift_Del	G	-	p.L437fs
LIHC	TCGA-DD-A39Y-01	CNOT6	ENST00000502447.1	chr5	179956274:179956388:179976930:179977117:179991488:179991578,	179976931	179977117	179977071	179977071	Frame_Shift_Del	A	-	p.K85fs
LIHC	TCGA-DD-A39Y-01	CNOT6	ENST00000393356.1,ENST00000261951.4	chr5	179976930:179977117:179980385:179980471:179991488:179991578,	179980386	179980471	179980437	179980437	Frame_Shift_Del	A	-	p.G117fs
LIHC	TCGA-DD-A39Y-01	IRF4	ENST00000493114.1,ENST00000380956.4	chr6	397110:397252:398827:398935:401423:401777,	398828	398935	398848	398848	Frame_Shift_Del	T	-	p.F220fs
LIHC	TCGA-DD-A39Y-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	555953:556013:556483:556564:562783:562845,	556484	556564	556513	556513	Frame_Shift_Del	C	-	p.V635fs
LIHC	TCGA-DD-A39Y-01	GMDS	ENST00000380805.2,ENST00000530927.1,ENST00000380815.4,ENST00000531690.1	chr6	1726649:1726746:1742701:1742820:1930336:1930464,	1742702	1742820	1742731	1742731	Frame_Shift_Del	T	-	p.K287fs
LIHC	TCGA-DD-A39Y-01	GMDS	ENST00000530927.1,ENST00000380815.4	chr6	2116004:2116114:2117702:2117790:2124920:2124965,	2117703	2117790	2117758	2117758	Frame_Shift_Del	A	-	p.F60fs
LIHC	TCGA-DD-A39Y-01	SERPINB1	ENST00000380739.5,ENST00000537185.1	chr6	2833641:2834246:2836089:2836257:2836341:2836484,	2836090	2836257	2836216	2836216	Frame_Shift_Del	T	-	p.K203fs
LIHC	TCGA-DD-A39Y-01	SERPINB1	ENST00000380739.5,ENST00000537185.1	chr6	2833641:2834246:2836089:2836257:2836341:2836484,	2836090	2836257	2836245	2836245	Frame_Shift_Del	T	-	p.T194fs
LIHC	TCGA-DD-A39Y-01	SERPINB6	ENST00000380546.3,ENST00000335686.5,ENST00000380524.1,ENST00000380529.1,ENST00000380539.1	chr6	2954825:2954943:2955757:2955904:2959401:2959576,	2955758	2955904	2955777	2955777	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-DD-A39Y-01	SERPINB6	ENST00000380539.1	chr6	2955757:2955904:2959401:2959576:2971724:2971819,2955757:2955904:2959401:2959576:2971350:2971440,2955757:2955904:2959401:2959576:2971766:2972090,2955757:2955904:2959401:2959576:2962127:2962342,2955757:2955904:2959401:2959576:2971481:2971539,	2959402	2959576	2959520	2959520	Frame_Shift_Del	A	-	p.L16fs
LIHC	TCGA-DD-A39Y-01	RIPK1	ENST00000380409.2,ENST00000259808.4,ENST00000479389.1	chr6	3078012:3078169:3081212:3081350:3083318:3083547,	3081213	3081350	3081253	3081253	Frame_Shift_Del	A	-	p.E121fs
LIHC	TCGA-DD-A39Y-01	BPHL	ENST00000434640.1,ENST00000488487.2,ENST00000380368.2,ENST00000424847.2,ENST00000380379.5,ENST00000380375.3,ENST00000490918.1,ENST00000430655.2,ENST00000433912.1	chr6	3127475:3127642:3129278:3129432:3137595:3137656,	3129279	3129432	3129298	3129298	Frame_Shift_Del	T	-	p.V116fs
LIHC	TCGA-DD-A39Y-01	SLC22A23	ENST00000380302.4,ENST00000406686.3,ENST00000497691.1,ENST00000490273.1	chr6	3273589:3273646:3284085:3284209:3285312:3285345,	3284086	3284209	3284133	3284133	Frame_Shift_Del	C	-	p.G560fs
LIHC	TCGA-DD-A39Y-01	PRPF4B	ENST00000538861.1,ENST00000337659.6,ENST00000481109.1,ENST00000480058.1	chr6	4037652:4037804:4041005:4041161:4042720:4042802,	4041006	4041161	4041106	4041106	Frame_Shift_Del	A	-	p.K505fs
LIHC	TCGA-DD-A39Y-01	C6orf201	ENST00000333388.5,ENST00000380175.4	chr6	4099233:4099432:4122182:4122280:4130375:4130595,	4122183	4122280	4122249	4122249	Frame_Shift_Del	C	-	p.N117fs
LIHC	TCGA-DD-A39Y-01	RPP40	ENST00000468105.1,ENST00000380051.2,ENST00000464646.1	chr6	5000042:5000138:5000796:5000865:5002334:5002479,	5000797	5000865	5000809	5000809	Frame_Shift_Del	G	-	p.L110fs
LIHC	TCGA-DD-A39Y-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7230261	7230261	Frame_Shift_Del	C	-	p.Y643fs
LIHC	TCGA-DD-A39Y-01	RREB1	ENST00000334984.6	chr6	7229229:7232140:7240670:7240835:7246656:7247454,7229229:7232140:7240670:7240835:7248743:7249457,	7240671	7240835	7240784	7240784	Frame_Shift_Del	G	-	p.G1308fs
LIHC	TCGA-DD-A39Y-01	DSP	ENST00000418664.2,ENST00000379802.3	chr6	7558348:7558497:7559458:7559633:7562884:7563013,	7559459	7559633	7559589	7559589	Frame_Shift_Del	A	-	p.K185fs
LIHC	TCGA-DD-A39Y-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580157	7580157	Frame_Shift_Del	A	-	p.E1245fs
LIHC	TCGA-DD-A39Y-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580646	7580646	Frame_Shift_Del	A	-	p.E1408fs
LIHC	TCGA-DD-A39Y-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120428	12120428	Frame_Shift_Del	C	-	p.P134fs
LIHC	TCGA-DD-A39Y-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12122963	12122963	Frame_Shift_Del	A	-	p.K979fs
LIHC	TCGA-DD-A39Y-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125097	12125097	Frame_Shift_Del	A	-	p.Q1690fs
LIHC	TCGA-DD-A39Y-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125210	12125210	Frame_Shift_Del	A	-	p.K1728fs
LIHC	TCGA-DD-A39Y-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13621038	13621038	Frame_Shift_Del	A	-	p.R251fs
LIHC	TCGA-DD-A39Y-01	RANBP9	ENST00000539980.1,ENST00000011619.3	chr6	13642710:13642823:13644776:13644961:13652890:13652913,	13644777	13644961	13644931	13644931	Frame_Shift_Del	T	-	p.T320fs
LIHC	TCGA-DD-A39Y-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15452236:15452406:15468772:15468949:15487537:15487773,	15468773	15468949	15468865	15468865	Frame_Shift_Del	A	-	p.K196fs
LIHC	TCGA-DD-A39Y-01	DTNBP1	ENST00000515875.1	chr6	15637974:15638035:15652317:15652371:15663044:15663151,	15652318	15652371	15652335	15652335	Frame_Shift_Del	T	-	p.K31fs
LIHC	TCGA-DD-A39Y-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16328049	16328049	Frame_Shift_Del	C	-	p.A165fs
LIHC	TCGA-DD-A39Y-01	CAP2	ENST00000476263.1,ENST00000465994.1,ENST00000378990.2,ENST00000493172.1,ENST00000489374.1,ENST00000479291.1	chr6	17393962:17393977:17421785:17421907:17426820:17426921,	17421786	17421907	17421868	17421868	Frame_Shift_Del	C	-	p.P29fs
LIHC	TCGA-DD-A39Y-01	CAP2	ENST00000489374.1	chr6	17426820:17426921:17463226:17463304:17507399:17507543,17426820:17426921:17463226:17463304:17539499:17539521,	17463227	17463304	17463289	17463289	Frame_Shift_Del	C	-	p.Y95fs
LIHC	TCGA-DD-A39Y-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17624791:17625064:17626038:17626395:17628885:17629311,	17626039	17626395	17626365	17626365	Frame_Shift_Del	A	-	p.F1192fs
LIHC	TCGA-DD-A39Y-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17765089	17765089	Frame_Shift_Del	A	-	p.F1509fs
LIHC	TCGA-DD-A39Y-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000378826.2	chr6	17764385:17765177:17772138:17772290:17773708:17773814,	17772139	17772290	17772215	17772215	Frame_Shift_Del	A	-	p.F1454fs
LIHC	TCGA-DD-A39Y-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000378816.5,ENST00000358380.6,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17779177:17779330:17779822:17779915:17780960:17781137,	17779823	17779915	17779867	17779867	Frame_Shift_Del	A	-	p.Y1286fs
LIHC	TCGA-DD-A39Y-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788023	Frame_Shift_Del	T	-	p.K1102fs
LIHC	TCGA-DD-A39Y-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837308	17837308	Frame_Shift_Del	C	-	p.G319fs
LIHC	TCGA-DD-A39Y-01	TPMT	ENST00000309983.4	chr6	18143826:18143959:18148053:18148146:18149218:18149402,	18148054	18148146	18148071	18148071	Frame_Shift_Del	T	-	p.K72fs
LIHC	TCGA-DD-A39Y-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18249928	18249928	Frame_Shift_Del	T	-	p.N239fs
LIHC	TCGA-DD-A39Y-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18249934	18249934	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-DD-A39Y-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18250049	18250049	Frame_Shift_Del	T	-	p.T199fs
LIHC	TCGA-DD-A39Y-01	DEK	ENST00000397239.3,ENST00000515742.1	chr6	18258183:18258293:18258534:18258636:18264073:18264227,	18258535	18258636	18258596	18258596	Frame_Shift_Del	T	-	p.K62fs
LIHC	TCGA-DD-A39Y-01	CDKAL1	ENST00000274695.4,ENST00000378610.1	chr6	20546578:20546754:20548823:20548936:20649523:20649608,	20548824	20548936	20548862	20548862	Frame_Shift_Del	G	-	p.W71fs
LIHC	TCGA-DD-A39Y-01	CDKAL1	ENST00000274695.4,ENST00000378610.1	chr6	21000457:21000603:21065278:21065459:21108631:21108694,	21065279	21065459	21065432	21065432	Frame_Shift_Del	A	-	p.A403fs
LIHC	TCGA-DD-A39Y-01	MRS2	ENST00000274747.7,ENST00000483634.1	chr6	24405395:24405469:24408635:24408672:24412449:24412623,	24408636	24408672	24408638	24408638	Frame_Shift_Del	A	-	p.T89fs
LIHC	TCGA-DD-A39Y-01	MRS2	ENST00000274747.7,ENST00000378353.1,ENST00000483634.1,ENST00000443868.2,ENST00000535061.1,ENST00000378386.3	chr6	24412513:24412623:24415260:24415391:24416624:24416741,	24415261	24415391	24415332	24415332	Frame_Shift_Del	C	-	p.D220fs
LIHC	TCGA-DD-A39Y-01	MRS2	ENST00000543597.1	chr6	24412513:24412623:24415243:24415391:24416624:24416741,	24415244	24415391	24415332	24415332	Frame_Shift_Del	C	-	p.D220fs
LIHC	TCGA-DD-A39Y-01	ALDH5A1	ENST00000546278.1,ENST00000491546.1,ENST00000357578.3	chr6	24505096:24505213:24515394:24515538:24520628:24520772,	24515395	24515538	24515400	24515400	Frame_Shift_Del	A	-	p.A244fs
LIHC	TCGA-DD-A39Y-01	KIAA0319	ENST00000543707.1,ENST00000378214.3,ENST00000430948.2,ENST00000535378.1	chr6	24547255:24547571:24551661:24551753:24554768:24554859,	24551662	24551753	24551725	24551725	Frame_Shift_Del	T	-	p.T984fs
LIHC	TCGA-DD-A39Y-01	KIAA0319	ENST00000543707.1	chr6	24596100:24596846:24601276:24601436:24645963:24646383,24596664:24596846:24601276:24601436:24645854:24646249,	24601277	24601436	24601320	24601320	Frame_Shift_Del	G	-	p.P4fs
LIHC	TCGA-DD-A39Y-01	SLC17A4	ENST00000377905.4	chr6	25770472:25770528:25770611:25770699:25771153:25771240,	25770612	25770699	25770638	25770638	Frame_Shift_Del	A	-	p.S186fs
LIHC	TCGA-DD-A39Y-01	SLC17A1	ENST00000476801.1,ENST00000244527.4	chr6	25813058:25813220:25813322:25813441:25819295:25819382,	25813323	25813441	25813354	25813354	Frame_Shift_Del	T	-	p.K235fs
LIHC	TCGA-DD-A39Y-01	SLC17A3	ENST00000509714.1,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25855371:25855458:25861851:25861939:25862460:25862672,	25861852	25861939	25861923	25861923	Frame_Shift_Del	C	-	p.G185fs
LIHC	TCGA-DD-A39Y-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26093113	26093113	Frame_Shift_Del	C	-	p.P274fs
LIHC	TCGA-DD-A39Y-01	BTN3A2	ENST00000524682.1	chr6	26368948:26369140:26370549:26370831:26373124:26373170,26368948:26369140:26370549:26370831:26373503:26373524,	26370550	26370831	26370616	26370616	Frame_Shift_Del	G	-	p.R167fs
LIHC	TCGA-DD-A39Y-01	PRSS16	ENST00000470870.1,ENST00000230582.3	chr6	27215673:27215827:27216625:27216725:27220586:27220728,27215673:27215827:27216625:27216725:27216878:27217008,	27216626	27216725	27216628	27216628	Frame_Shift_Del	T	-	p.R80fs
LIHC	TCGA-DD-A39Y-01	PRSS16	ENST00000481125.1	chr6	27215673:27215827:27220586:27220728:27222471:27222478,27216878:27217008:27220586:27220728:27222471:27222478,27216714:27216725:27220586:27220728:27222471:27222478,27218995:27219043:27220586:27220728:27222764:27222898,27218995:27219043:27220586:27220728:27222471:27222478,27219528:27219819:27220586:27220728:27222471:27222478,27219100:27219280:27220586:27220728:27222764:27222910,27219528:27219819:27220586:27220728:27222764:27222898,	27220587	27220728	27220623	27220623	Frame_Shift_Del	T	-	p.F349fs
LIHC	TCGA-DD-A39Y-01	ZSCAN31	ENST00000439158.1	chr6	28295248:28295310:28297079:28297555:28303858:28303911,28295248:28295310:28297079:28297555:28303606:28303713,	28297080	28297555	28297301	28297301	Frame_Shift_Del	G	-	p.R54fs
LIHC	TCGA-DD-A39Y-01	ZSCAN31	ENST00000447021.1	chr6	28295248:28295310:28297079:28297491:28303858:28303911,28295248:28295310:28297079:28297491:28304566:28304720,28295248:28295310:28297079:28297491:28303606:28303713,	28297080	28297491	28297301	28297301	Frame_Shift_Del	G	-	p.R54fs
LIHC	TCGA-DD-A39Y-01	ZSCAN23	ENST00000289788.4	chr6	28403236:28403384:28403635:28404120:28411175:28411244,	28403636	28404120	28403865	28403865	Frame_Shift_Del	G	-	p.P60fs
LIHC	TCGA-DD-A39Y-01	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3	chr6	28876584:28876617:28876749:28876865:28879472:28879495,	28876750	28876865	28876818	28876818	Frame_Shift_Del	A	-	p.L273fs
LIHC	TCGA-DD-A39Y-01	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3,ENST00000498117.1	chr6	28879472:28879495:28887788:28888019:28889668:28889753,	28887789	28888019	28887978	28887978	Frame_Shift_Del	A	-	p.F186fs
LIHC	TCGA-DD-A39Y-01	HLA-F	ENST00000606273.1	chr6	29692193:29692225:29692807:29693083:29693223:29693340,29692193:29692225:29692807:29693083:29693228:29693340,	29692808	29693083	29693065	29693065	Frame_Shift_Del	C	-	p.P172fs
LIHC	TCGA-DD-A39Y-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29912060	29912060	Frame_Shift_Del	G	-	p.G261fs
LIHC	TCGA-DD-A39Y-01	TRIM31	ENST00000485864.1,ENST00000376734.3,ENST00000540829.1	chr6	30072972:30073019:30075829:30075945:30076802:30076825,	30075830	30075945	30075837	30075837	Frame_Shift_Del	T	-	p.K292fs
LIHC	TCGA-DD-A39Y-01	HLA-E	ENST00000376630.4,ENST00000493699.1	chr6	30457502:30457772:30458016:30458292:30458913:30459060,	30458017	30458292	30458218	30458218	Frame_Shift_Del	C	-	p.A179fs
LIHC	TCGA-DD-A39Y-01	GNL1	ENST00000376621.3	chr6	30520243:30520438:30520860:30520956:30521126:30521334,	30520861	30520956	30520865	30520865	Frame_Shift_Del	C	-	p.G300fs
LIHC	TCGA-DD-A39Y-01	GNL1	ENST00000376621.3	chr6	30520243:30520438:30520860:30520956:30521126:30521334,	30520861	30520956	30520931	30520931	Frame_Shift_Del	C	-	p.G278fs
LIHC	TCGA-DD-A39Y-01	ABCF1	ENST00000441867.1,ENST00000326195.8	chr6	30548182:30548296:30550170:30550284:30550842:30550965,	30550171	30550284	30550237	30550237	Frame_Shift_Del	C	-	p.P249fs
LIHC	TCGA-DD-A39Y-01	ABCF1	ENST00000475993.1,ENST00000376545.3,ENST00000326195.8	chr6	30551581:30551667:30551968:30552108:30552194:30552343,	30551969	30552108	30552076	30552076	Frame_Shift_Del	G	-	p.G404fs
LIHC	TCGA-DD-A39Y-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610661	30610661	Frame_Shift_Del	C	-	p.P281fs
LIHC	TCGA-DD-A39Y-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610714	30610714	Frame_Shift_Del	C	-	p.C298fs
LIHC	TCGA-DD-A39Y-01	C6orf136	ENST00000488383.1,ENST00000376473.5	chr6	30615382:30615623:30617334:30617736:30618770:30618859,30614962:30615080:30617334:30617736:30618770:30618859,	30617335	30617736	30617532	30617532	Frame_Shift_Del	G	-	p.K271fs
LIHC	TCGA-DD-A39Y-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30653117	30653117	Frame_Shift_Del	C	-	p.E227fs
LIHC	TCGA-DD-A39Y-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30653394	30653394	Frame_Shift_Del	G	-	p.P134fs
LIHC	TCGA-DD-A39Y-01	FLOT1	ENST00000456573.2	chr6	30708285:30708368:30708455:30708575:30708966:30709110,30708285:30708368:30708455:30708575:30709390:30709481,	30708456	30708575	30708552	30708552	Frame_Shift_Del	T	-	p.K126fs
LIHC	TCGA-DD-A39Y-01	DDR1	ENST00000376568.3,ENST00000376575.3,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8	chr6	30862364:30862448:30864397:30864642:30864790:30864823,30863180:30863291:30864397:30864642:30864790:30864823,	30864398	30864642	30864471	30864471	Frame_Shift_Del	C	-	p.V566fs
LIHC	TCGA-DD-A39Y-01	DDR1	ENST00000376568.3,ENST00000376575.3,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8	chr6	30862364:30862448:30864397:30864642:30864790:30864823,30863180:30863291:30864397:30864642:30864790:30864823,	30864398	30864642	30864571	30864571	Frame_Shift_Del	C	-	p.P601fs
LIHC	TCGA-DD-A39Y-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30863180:30863291:30864507:30864642:30864790:30864823,	30864508	30864642	30864571	30864571	Frame_Shift_Del	C	-	p.P601fs
LIHC	TCGA-DD-A39Y-01	VARS2	ENST00000421263.1	chr6	30882042:30882121:30882586:30882814:30882932:30883014,30882158:30882246:30882586:30882814:30882932:30883014,	30882587	30882814	30882633	30882633	Frame_Shift_Del	C	-	p.A7fs
LIHC	TCGA-DD-A39Y-01	VARS2	ENST00000541562.1	chr6	30882042:30882121:30882581:30882814:30882932:30883014,30882158:30882246:30882581:30882814:30882932:30883014,	30882582	30882814	30882633	30882633	Frame_Shift_Del	C	-	p.A7fs
LIHC	TCGA-DD-A39Y-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000542001.1,ENST00000541562.1,ENST00000321897.5	chr6	30884881:30885001:30885471:30885583:30886603:30886692,	30885472	30885583	30885564	30885564	Frame_Shift_Del	C	-	p.F322fs
LIHC	TCGA-DD-A39Y-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000469358.1,ENST00000542001.1,ENST00000541562.1,ENST00000321897.5	chr6	30889365:30889468:30889701:30889772:30889892:30890018,	30889702	30889772	30889742	30889742	Frame_Shift_Del	C	-	p.F592fs
LIHC	TCGA-DD-A39Y-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000542001.1,ENST00000541562.1,ENST00000321897.5	chr6	30889701:30889772:30889892:30890018:30890226:30890331,	30889893	30890018	30889982	30889982	Frame_Shift_Del	G	-	p.L632fs
LIHC	TCGA-DD-A39Y-01	MUC21	ENST00000376296.3	chr6	30951494:30951796:30954013:30955458:30955776:30956414,	30954014	30955458	30954478	30954478	Frame_Shift_Del	G	-	p.G176fs
LIHC	TCGA-DD-A39Y-01	MUC21	ENST00000376296.3	chr6	30951494:30951796:30954013:30955458:30955776:30956414,	30954014	30955458	30954973	30954973	Frame_Shift_Del	G	-	p.G341fs
LIHC	TCGA-DD-A39Y-01	MUC21	ENST00000376296.3	chr6	30951494:30951796:30954013:30955458:30955776:30956414,	30954014	30955458	30955018	30955018	Frame_Shift_Del	G	-	p.G356fs
LIHC	TCGA-DD-A39Y-01	HLA-C	ENST00000376237.4	chr6	31238215:31238262:31238849:31239108:31239375:31239533,	31238850	31239108	31239049	31239049	Frame_Shift_Del	G	-	p.S140fs
LIHC	TCGA-DD-A39Y-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000495835.1,ENST00000415537.1	chr6	31238215:31238262:31238849:31239125:31239375:31239533,	31238850	31239125	31239049	31239049	Frame_Shift_Del	G	-	p.S140fs
LIHC	TCGA-DD-A39Y-01	MICA	ENST00000421350.1	chr6	31379037:31379136:31379723:31380002:31380101:31380237,31378319:31378574:31379723:31380002:31380101:31380237,	31379724	31380002	31379823	31379823	Frame_Shift_Del	C	-	p.T238fs
LIHC	TCGA-DD-A39Y-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31602574:31602754:31602908:31603049:31603170:31603242,	31602909	31603049	31603020	31603020	Frame_Shift_Del	C	-	p.P1759fs
LIHC	TCGA-DD-A39Y-01	PRRC2A	ENST00000376033.2,ENST00000376007.4,ENST00000487839.1	chr6	31603743:31603826:31603985:31604196:31604286:31604385,	31603986	31604196	31604005	31604005	Frame_Shift_Del	C	-	p.P1883fs
LIHC	TCGA-DD-A39Y-01	CLIC1	ENST00000395892.1,ENST00000375780.2,ENST00000375779.2	chr6	31701612:31701738:31701930:31702040:31704038:31704127,	31701931	31702040	31701998	31701998	Frame_Shift_Del	G	-	p.Q28fs
LIHC	TCGA-DD-A39Y-01	VWA7	ENST00000447450.1,ENST00000467576.1,ENST00000375686.3	chr6	31743940:31744019:31744322:31744571:31744885:31745049,	31744323	31744571	31744482	31744482	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-DD-A39Y-01	VARS	ENST00000482996.1,ENST00000428445.1,ENST00000375663.3	chr6	31748327:31748345:31748481:31748560:31748646:31748715,	31748482	31748560	31748540	31748540	Frame_Shift_Del	C	-	p.G913fs
LIHC	TCGA-DD-A39Y-01	SLC44A4	ENST00000544672.1,ENST00000375562.4,ENST00000229729.6	chr6	31831353:31831525:31832428:31832513:31832592:31832687,	31832429	31832513	31832440	31832440	Frame_Shift_Del	A	-	p.F591fs
LIHC	TCGA-DD-A39Y-01	SLC44A4	ENST00000544672.1,ENST00000375562.4,ENST00000229729.6	chr6	31837372:31837414:31839090:31839174:31839250:31839338,31838588:31838824:31839090:31839174:31839250:31839338,	31839091	31839174	31839149	31839149	Frame_Shift_Del	G	-	p.R139fs
LIHC	TCGA-DD-A39Y-01	EHMT2	ENST00000465429.1,ENST00000375528.4,ENST00000375530.4,ENST00000375537.4,ENST00000395728.3	chr6	31864039:31864293:31864382:31864601:31864699:31864766,	31864383	31864601	31864543	31864543	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-DD-A39Y-01	STK19	ENST00000478486.1	chr6	31940173:31940288:31940397:31940696:31946679:31946775,	31940398	31940696	31940438	31940438	Frame_Shift_Del	C	-	p.F157fs
LIHC	TCGA-DD-A39Y-01	STK19	ENST00000473983.1,ENST00000375331.2,ENST00000466132.1,ENST00000492583.1,ENST00000375333.2,ENST00000466336.1	chr6	31940173:31940288:31940397:31940534:31946679:31946775,	31940398	31940534	31940438	31940438	Frame_Shift_Del	C	-	p.F157fs
LIHC	TCGA-DD-A39Y-01	C4B	ENST00000425700.2,ENST00000435363.2	chr6	31994430:31994501:31994759:31994899:31995012:31995222,	31994760	31994899	31994775	31994775	Frame_Shift_Del	C	-	p.T823fs
LIHC	TCGA-DD-A39Y-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32017774:32018098:32020446:32020770:32021164:32021482,	32020447	32020770	32020693	32020693	Frame_Shift_Del	C	-	p.E2957fs
LIHC	TCGA-DD-A39Y-01	ATF6B	ENST00000375203.3,ENST00000375201.4	chr6	32085363:32085471:32085635:32085815:32086551:32086638,	32085636	32085815	32085754	32085754	Frame_Shift_Del	G	-	p.R434fs
LIHC	TCGA-DD-A39Y-01	ATF6B	ENST00000495579.1,ENST00000375203.3,ENST00000485314.1,ENST00000375201.4	chr6	32088547:32088679:32088765:32088901:32089039:32089125,	32088766	32088901	32088781	32088781	Frame_Shift_Del	G	-	p.L226fs
LIHC	TCGA-DD-A39Y-01	PBX2	ENST00000375050.4	chr6	32152511:32154251:32154380:32154467:32154589:32154678,	32154381	32154467	32154389	32154389	Frame_Shift_Del	C	-	p.E398fs
LIHC	TCGA-DD-A39Y-01	PBX2	ENST00000375050.4	chr6	32152511:32154251:32154380:32154467:32154589:32154678,	32154381	32154467	32154433	32154433	Frame_Shift_Del	C	-	p.G383fs
LIHC	TCGA-DD-A39Y-01	PBX2	ENST00000375050.4	chr6	32152511:32154251:32154380:32154467:32154589:32154678,	32154381	32154467	32154441	32154441	Frame_Shift_Del	C	-	p.G380fs
LIHC	TCGA-DD-A39Y-01	NOTCH4	ENST00000375023.3,ENST00000474612.1	chr6	32166434:32166507:32166702:32166922:32168607:32168783,	32166703	32166922	32166916	32166916	Frame_Shift_Del	G	-	p.P1441fs
LIHC	TCGA-DD-A39Y-01	NOTCH4	ENST00000375023.3	chr6	32169188:32169277:32169852:32170376:32171546:32171659,	32169853	32170376	32170147	32170147	Frame_Shift_Del	C	-	p.G1154fs
LIHC	TCGA-DD-A39Y-01	HLA-DRA	ENST00000395388.2	chr6	32410227:32410470:32410961:32411243:32411532:32411698,	32410962	32411243	32411211	32411211	Frame_Shift_Del	G	-	p.W193fs
LIHC	TCGA-DD-A39Y-01	HLA-DRA	ENST00000374982.5	chr6	32410227:32410470:32411036:32411243:32411532:32411698,	32411037	32411243	32411211	32411211	Frame_Shift_Del	G	-	p.W193fs
LIHC	TCGA-DD-A39Y-01	HLA-DRB5	ENST00000374975.3	chr6	32485830:32485854:32486332:32486443:32487146:32487338,	32486333	32486443	32486383	32486383	Frame_Shift_Del	C	-	p.G238fs
LIHC	TCGA-DD-A39Y-01	HLA-DRB1	ENST00000360004.5	chr6	32548023:32548047:32548522:32548633:32549333:32549430,	32548523	32548633	32548585	32548585	Frame_Shift_Del	C	-	p.G234fs
LIHC	TCGA-DD-A39Y-01	HLA-DQA1	ENST00000482745.1,ENST00000343139.5,ENST00000374949.2,ENST00000395363.1	chr6	32609086:32609335:32609748:32610030:32610386:32610561,	32609749	32610030	32609998	32609998	Frame_Shift_Del	G	-	p.W194fs
LIHC	TCGA-DD-A39Y-01	PSMB8	ENST00000395339.3,ENST00000374881.2,ENST00000374882.3,ENST00000484003.1	chr6	32808797:32808824:32809307:32809512:32809910:32810040,	32809308	32809512	32809422	32809422	Frame_Shift_Del	C	-	p.V206fs
LIHC	TCGA-DD-A39Y-01	PSMB8	ENST00000395339.3,ENST00000374881.2,ENST00000374882.3,ENST00000484003.1	chr6	32809307:32809512:32809910:32810040:32810448:32810488,	32809911	32810040	32809990	32809990	Frame_Shift_Del	T	-	p.K149fs
LIHC	TCGA-DD-A39Y-01	COL11A2	ENST00000357486.1,ENST00000374708.4,ENST00000374713.1,ENST00000374712.1,ENST00000341947.2,ENST00000395197.1,ENST00000361917.1,ENST00000374714.1	chr6	33139243:33139351:33139489:33139597:33139826:33139880,	33139490	33139597	33139560	33139560	Frame_Shift_Del	C	-	p.G1027fs
LIHC	TCGA-DD-A39Y-01	COL11A2	ENST00000357486.1,ENST00000374708.4,ENST00000374713.1,ENST00000374712.1,ENST00000341947.2,ENST00000395197.1,ENST00000361917.1,ENST00000374714.1	chr6	33140065:33140155:33140306:33140414:33140836:33140890,	33140307	33140414	33140319	33140319	Frame_Shift_Del	T	-	p.K962fs
LIHC	TCGA-DD-A39Y-01	COL11A2	ENST00000341947.2,ENST00000457788.1,ENST00000374714.1	chr6	33148887:33148947:33151921:33152101:33153477:33153555,33148887:33148947:33151921:33152101:33154403:33154595,33148887:33148947:33151921:33152101:33152768:33152831,	33151922	33152101	33152075	33152075	Frame_Shift_Del	G	-	p.P322fs
LIHC	TCGA-DD-A39Y-01	COL11A2	ENST00000341947.2,ENST00000395197.1,ENST00000457788.1	chr6	33148887:33148947:33153477:33153555:33154403:33154595,33151921:33152101:33153477:33153555:33154403:33154595,33152768:33152831:33153477:33153555:33154403:33154595,	33153478	33153555	33153488	33153488	Frame_Shift_Del	G	-	p.P289fs
LIHC	TCGA-DD-A39Y-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169152	33169152	Frame_Shift_Del	G	-	p.G44fs
LIHC	TCGA-DD-A39Y-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177402:33177563:33177691:33177907:33178934:33178964,	33177692	33177907	33177752	33177752	Frame_Shift_Del	C	-	p.D100fs
LIHC	TCGA-DD-A39Y-01	VPS52	ENST00000464425.1	chr6	33236275:33236426:33236790:33236995:33237266:33237334,	33236791	33236995	33236841	33236841	Frame_Shift_Del	C	-	p.G166fs
LIHC	TCGA-DD-A39Y-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000463486.1,ENST00000478934.1,ENST00000445902.2	chr6	33236275:33236426:33236790:33236966:33237266:33237334,	33236791	33236966	33236841	33236841	Frame_Shift_Del	C	-	p.G166fs
LIHC	TCGA-DD-A39Y-01	RPS18	ENST00000474626.1,ENST00000496813.1	chr6	33239875:33239899:33240404:33240503:33243573:33243660,	33240405	33240503	33240474	33240474	Frame_Shift_Del	A	-	p.K25fs
LIHC	TCGA-DD-A39Y-01	RPS18	ENST00000474973.1	chr6	33239875:33239899:33240363:33240503:33243573:33243660,	33240364	33240503	33240474	33240474	Frame_Shift_Del	A	-	p.K25fs
LIHC	TCGA-DD-A39Y-01	PFDN6	ENST00000463584.1	chr6	33257950:33258021:33258102:33258227:33258492:33258639,33257950:33258021:33258102:33258227:33264605:33266178,	33258103	33258227	33258174	33258174	Frame_Shift_Del	G	-	p.L69fs
LIHC	TCGA-DD-A39Y-01	RGL2	ENST00000437840.2,ENST00000497454.1,ENST00000491168.1,ENST00000476616.1	chr6	33260871:33261083:33261189:33261301:33261380:33261476,	33261190	33261301	33261239	33261239	Frame_Shift_Del	C	-	p.G556fs
LIHC	TCGA-DD-A39Y-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263921	33263921	Frame_Shift_Del	G	-	p.Q218fs
LIHC	TCGA-DD-A39Y-01	DAXX	ENST00000266000.6,ENST00000374542.5	chr6	33288161:33288368:33288512:33289344:33290638:33290695,33288161:33288368:33288512:33289344:33289495:33289646,	33288513	33289344	33289253	33289253	Frame_Shift_Del	A	-	p.L100fs
LIHC	TCGA-DD-A39Y-01	PHF1	ENST00000374516.3	chr6	33382512:33382606:33382731:33382921:33383011:33383106,	33382732	33382921	33382871	33382871	Frame_Shift_Del	C	-	p.P397fs
LIHC	TCGA-DD-A39Y-01	PHF1	ENST00000374512.3	chr6	33382512:33382606:33382742:33382921:33383011:33383106,33382512:33382606:33382742:33382921:33383366:33383447,	33382743	33382921	33382871	33382871	Frame_Shift_Del	C	-	p.P397fs
LIHC	TCGA-DD-A39Y-01	PHF1	ENST00000374516.3	chr6	33382512:33382606:33382731:33382921:33383011:33383106,	33382732	33382921	33382896	33382896	Frame_Shift_Del	G	-	p.R405fs
LIHC	TCGA-DD-A39Y-01	PHF1	ENST00000374512.3	chr6	33382512:33382606:33382742:33382921:33383011:33383106,33382512:33382606:33382742:33382921:33383366:33383447,	33382743	33382921	33382896	33382896	Frame_Shift_Del	G	-	p.R405fs
LIHC	TCGA-DD-A39Y-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33626461:33626605:33626797:33626896:33627242:33627326,	33626798	33626896	33626806	33626806	Frame_Shift_Del	G	-	p.V179fs
LIHC	TCGA-DD-A39Y-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33658693:33658886:33659391:33659496:33659577:33659705,	33659392	33659496	33659396	33659396	Frame_Shift_Del	C	-	p.S2410fs
LIHC	TCGA-DD-A39Y-01	HMGA1	ENST00000401473.3,ENST00000311487.5,ENST00000447654.1,ENST00000347617.6,ENST00000478214.1,ENST00000374116.3	chr6	34210488:34210572:34211244:34211295:34212607:34212928,	34211245	34211295	34211287	34211287	Frame_Shift_Del	A	-	p.K89fs
LIHC	TCGA-DD-A39Y-01	RPS10	ENST00000344700.3	chr6	34385230:34385324:34385574:34385674:34386145:34386201,	34385575	34385674	34385629	34385629	Frame_Shift_Del	T	-	p.R168fs
LIHC	TCGA-DD-A39Y-01	C6orf106	ENST00000374021.1,ENST00000374023.3	chr6	34574577:34574681:34614377:34614575:34622401:34622556,	34614378	34614575	34614530	34614530	Frame_Shift_Del	C	-	p.G120fs
LIHC	TCGA-DD-A39Y-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34803932:34804125:34823393:34823480:34824015:34824186,	34823394	34823480	34823461	34823461	Frame_Shift_Del	T	-	p.Y368fs
LIHC	TCGA-DD-A39Y-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34835242:34835393:34838630:34838893:34839360:34839469,	34838631	34838893	34838727	34838727	Frame_Shift_Del	C	-	p.S1272fs
LIHC	TCGA-DD-A39Y-01	TAF11	ENST00000420584.2	chr6	34848065:34848153:34850708:34850857:34855563:34855819,	34850709	34850857	34850780	34850780	Frame_Shift_Del	T	-	p.K83fs
LIHC	TCGA-DD-A39Y-01	ANKS1A	ENST00000360359.3	chr6	34985249:34985836:35021875:35021942:35027923:35028030,	35021876	35021942	35021882	35021882	Frame_Shift_Del	A	-	p.K673fs
LIHC	TCGA-DD-A39Y-01	TCP11	ENST00000444780.2,ENST00000412155.2,ENST00000507706.1,ENST00000418521.2,ENST00000512012.1,ENST00000373974.4,ENST00000311875.5,ENST00000504758.1,ENST00000505911.1,ENST00000505400.1	chr6	35090085:35090114:35096838:35096959:35108981:35109030,35090085:35090114:35096838:35096959:35108523:35108661,35090085:35090114:35096838:35096959:35107796:35108002,35090085:35090114:35096838:35096959:35103883:35103980,	35096839	35096959	35096927	35096927	Frame_Shift_Del	T	-	p.N103fs
LIHC	TCGA-DD-A39Y-01	ZNF76	ENST00000440666.2,ENST00000373953.3,ENST00000339411.5,ENST00000469195.1	chr6	35259054:35259180:35259334:35259514:35260316:35260564,35259054:35259180:35259334:35259514:35260330:35260419,	35259335	35259514	35259354	35259354	Frame_Shift_Del	C	-	p.C257fs
LIHC	TCGA-DD-A39Y-01	DEF6	ENST00000316637.5	chr6	35280078:35280315:35280402:35280549:35285667:35285776,	35280403	35280549	35280512	35280512	Frame_Shift_Del	G	-	p.R257fs
LIHC	TCGA-DD-A39Y-01	FKBP5	ENST00000540787.1,ENST00000539068.1,ENST00000357266.4,ENST00000536438.1	chr6	35543175:35543719:35544770:35545010:35547812:35547998,	35544771	35545010	35544981	35544981	Frame_Shift_Del	T	-	p.K352fs
LIHC	TCGA-DD-A39Y-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000373822.1,ENST00000423325.2,ENST00000346162.6,ENST00000510290.1	chr6	35837443:35837678:35838057:35838271:35838710:35838732,	35838058	35838271	35838076	35838076	Frame_Shift_Del	T	-	p.M325fs
LIHC	TCGA-DD-A39Y-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000373822.1,ENST00000423325.2,ENST00000346162.6,ENST00000510290.1	chr6	35837443:35837678:35838057:35838271:35838710:35838732,	35838058	35838271	35838145	35838145	Frame_Shift_Del	T	-	p.R302fs
LIHC	TCGA-DD-A39Y-01	MAPK14	ENST00000229794.4,ENST00000229795.3,ENST00000468133.1	chr6	36070347:36070426:36075231:36075405:36076156:36076286,	36075232	36075405	36075369	36075369	Frame_Shift_Del	T	-	p.F327fs
LIHC	TCGA-DD-A39Y-01	BRPF3	ENST00000534400.1	chr6	36185693:36185787:36189944:36190042:36193043:36193141,36185693:36185787:36189944:36190042:36193047:36193141,36185693:36185787:36189944:36190042:36196678:36196833,	36189945	36190042	36189961	36189961	Frame_Shift_Del	A	-	p.K1034fs
LIHC	TCGA-DD-A39Y-01	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36269803	36269803	Frame_Shift_Del	G	-	p.W314fs
LIHC	TCGA-DD-A39Y-01	RNF8	ENST00000469731.1,ENST00000479516.1	chr6	37321866:37322051:37328221:37328350:37336259:37336314,	37328222	37328350	37328266	37328266	Frame_Shift_Del	A	-	p.S52fs
LIHC	TCGA-DD-A39Y-01	RNF8	ENST00000498460.1	chr6	37342395:37342485:37344701:37344809:37358517:37358838,37342395:37342485:37344701:37344809:37348925:37349130,37339287:37339350:37344701:37344809:37358517:37358838,	37344702	37344809	37344787	37344787	Frame_Shift_Del	T	-	p.I405fs
LIHC	TCGA-DD-A39Y-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38743529:38743727:38746163:38746240:38747741:38747841,	38746164	38746240	38746200	38746200	Frame_Shift_Del	A	-	p.K450fs
LIHC	TCGA-DD-A39Y-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38850685:38850828:38851097:38851232:38851651:38851774,	38851098	38851232	38851130	38851130	Frame_Shift_Del	A	-	p.A2461fs
LIHC	TCGA-DD-A39Y-01	KIF6	ENST00000287152.7,ENST00000538893.1,ENST00000373215.3,ENST00000373216.3,ENST00000458470.1	chr6	39563829:39564036:39580964:39581094:39602624:39602734,	39580965	39581094	39580993	39580993	Frame_Shift_Del	A	-	p.L204fs
LIHC	TCGA-DD-A39Y-01	KIF6	ENST00000287152.7,ENST00000538893.1,ENST00000373215.3,ENST00000373216.3,ENST00000458470.1	chr6	39563829:39564036:39580964:39581094:39602624:39602734,	39580965	39581094	39581058	39581058	Frame_Shift_Del	A	-	p.I182fs
LIHC	TCGA-DD-A39Y-01	MOCS1	ENST00000308559.7,ENST00000432280.2,ENST00000340692.5,ENST00000425303.2,ENST00000373188.2,ENST00000373181.4,ENST00000373186.4,ENST00000373195.3,ENST00000373175.4	chr6	39881060:39881172:39881517:39881579:39883811:39883976,	39881518	39881579	39881558	39881558	Frame_Shift_Del	C	-	p.G202fs
LIHC	TCGA-DD-A39Y-01	TSPO2	ENST00000373161.1,ENST00000470917.1	chr6	41010704:41010897:41011295:41011437:41011678:41011951,	41011296	41011437	41011345	41011345	Frame_Shift_Del	C	-	p.P75fs
LIHC	TCGA-DD-A39Y-01	TSPO2	ENST00000373161.1,ENST00000470917.1	chr6	41010704:41010897:41011295:41011437:41011678:41011951,	41011296	41011437	41011411	41011411	Frame_Shift_Del	T	-	p.F98fs
LIHC	TCGA-DD-A39Y-01	NFYA	ENST00000353205.5,ENST00000341376.6	chr6	41059284:41059433:41060650:41060824:41062134:41062236,	41060651	41060824	41060683	41060683	Frame_Shift_Del	C	-	p.I249fs
LIHC	TCGA-DD-A39Y-01	MDFI	ENST00000419164.1,ENST00000373051.2,ENST00000230321.6,ENST00000432027.1	chr6	41613991:41614046:41617356:41617581:41621056:41621182,	41617357	41617581	41617562	41617562	Frame_Shift_Del	C	-	p.I94fs
LIHC	TCGA-DD-A39Y-01	BYSL	ENST00000230340.4,ENST00000372996.2	chr6	41895172:41895274:41897869:41898008:41898372:41898506,	41897870	41898008	41897875	41897875	Frame_Shift_Del	C	-	p.T146fs
LIHC	TCGA-DD-A39Y-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236222	42236222	Frame_Shift_Del	A	-	p.I369fs
LIHC	TCGA-DD-A39Y-01	UBR2	ENST00000372899.1,ENST00000372901.1,ENST00000372903.2	chr6	42541471:42541731:42559888:42559967:42561928:42562042,	42559889	42559967	42559932	42559932	Frame_Shift_Del	T	-	p.F128fs
LIHC	TCGA-DD-A39Y-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43006579:43006725:43007893:43008164:43008267:43008484,	43007894	43008164	43007923	43007923	Frame_Shift_Del	A	-	p.L1506fs
LIHC	TCGA-DD-A39Y-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43006579:43006725:43007893:43008164:43008267:43008484,	43007894	43008164	43007958	43007958	Frame_Shift_Del	G	-	p.P1494fs
LIHC	TCGA-DD-A39Y-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43014617:43014845:43015885:43015991:43016069:43016307,	43015886	43015991	43015912	43015912	Frame_Shift_Del	G	-	p.L799fs
LIHC	TCGA-DD-A39Y-01	MRPL2	ENST00000388752.3,ENST00000230413.5,ENST00000480286.1,ENST00000470667.1,ENST00000491898.1	chr6	43023818:43023934:43024044:43024183:43025802:43025971,	43024045	43024183	43024086	43024086	Frame_Shift_Del	G	-	p.P121fs
LIHC	TCGA-DD-A39Y-01	PTK7	ENST00000470019.1	chr6	43097464:43097567:43098248:43098399:43099753:43099902,	43098249	43098399	43098344	43098344	Frame_Shift_Del	C	-	p.P254fs
LIHC	TCGA-DD-A39Y-01	SRF	ENST00000265354.4,ENST00000457278.2	chr6	43141584:43141851:43143443:43143705:43144285:43144405,	43143444	43143705	43143596	43143596	Frame_Shift_Del	C	-	p.S311fs
LIHC	TCGA-DD-A39Y-01	CRIP3	ENST00000274990.4,ENST00000372569.3	chr6	43273956:43274051:43274183:43274255:43275349:43275481,	43274184	43274255	43274226	43274226	Frame_Shift_Del	C	-	p.E120fs
LIHC	TCGA-DD-A39Y-01	ZNF318	ENST00000318149.3,ENST00000605935.1,ENST00000361428.2	chr6	43316061:43316363:43320114:43320214:43322401:43323883,	43320115	43320214	43320194	43320194	Frame_Shift_Del	T	-	p.K897fs
LIHC	TCGA-DD-A39Y-01	XPO5	ENST00000486936.2,ENST00000265351.7,ENST00000488195.2	chr6	43492844:43492952:43493576:43493659:43494422:43494485,	43493577	43493659	43493628	43493628	Frame_Shift_Del	G	-	p.P1005fs
LIHC	TCGA-DD-A39Y-01	XPO5	ENST00000496341.2,ENST00000265351.7	chr6	43517629:43517671:43519034:43519190:43521109:43521240,	43519035	43519190	43519049	43519049	Frame_Shift_Del	G	-	p.Q572fs
LIHC	TCGA-DD-A39Y-01	POLH	ENST00000372226.1,ENST00000535400.1,ENST00000372236.4	chr6	43555008:43555226:43565432:43565602:43568724:43568828,	43565433	43565602	43565456	43565456	Frame_Shift_Del	T	-	p.F172fs
LIHC	TCGA-DD-A39Y-01	POLH	ENST00000372226.1,ENST00000535400.1,ENST00000372236.4	chr6	43555008:43555226:43565432:43565602:43568724:43568828,	43565433	43565602	43565569	43565569	Frame_Shift_Del	T	-	p.G209fs
LIHC	TCGA-DD-A39Y-01	C6orf223	ENST00000448947.2	chr6	43968756:43968880:43969789:43969864:43970417:43971142,43968368:43968437:43969789:43969864:43970417:43971142,	43969790	43969864	43969799	43969799	Frame_Shift_Del	C	-	p.T73fs
LIHC	TCGA-DD-A39Y-01	TMEM63B	ENST00000532634.1,ENST00000323267.6	chr6	44095375:44095415:44102297:44102480:44102753:44102833,	44102298	44102480	44102359	44102359	Frame_Shift_Del	C	-	p.A13fs
LIHC	TCGA-DD-A39Y-01	TMEM63B	ENST00000534326.1	chr6	44095375:44095415:44102156:44102480:44102753:44102833,	44102157	44102480	44102359	44102359	Frame_Shift_Del	C	-	p.A13fs
LIHC	TCGA-DD-A39Y-01	TMEM63B	ENST00000371893.2,ENST00000323267.6,ENST00000533121.1,ENST00000259746.9	chr6	44117595:44117702:44117960:44118047:44118300:44118366,	44117961	44118047	44118015	44118015	Frame_Shift_Del	G	-	p.M525fs
LIHC	TCGA-DD-A39Y-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44217757:44217891:44218027:44218336:44218784:44218950,	44218028	44218336	44218116	44218116	Frame_Shift_Del	A	-	p.E246fs
LIHC	TCGA-DD-A39Y-01	AARS2	ENST00000244571.4	chr6	44267390:44268448:44268892:44269003:44269117:44269157,	44268893	44269003	44268923	44268923	Frame_Shift_Del	C	-	p.G921fs
LIHC	TCGA-DD-A39Y-01	AARS2	ENST00000244571.4	chr6	44274985:44275131:44278035:44278180:44278730:44278898,	44278036	44278180	44278107	44278107	Frame_Shift_Del	C	-	p.A275fs
LIHC	TCGA-DD-A39Y-01	PLA2G7	ENST00000538237.1,ENST00000541026.1,ENST00000274793.7,ENST00000537365.1	chr6	46678281:46678395:46679232:46679356:46680005:46680074,	46679233	46679356	46679294	46679294	Frame_Shift_Del	T	-	p.K201fs
LIHC	TCGA-DD-A39Y-01	PLA2G7	ENST00000538237.1,ENST00000274793.7,ENST00000537365.1	chr6	46680005:46680074:46682196:46682290:46702916:46703076,46680005:46680074:46682196:46682290:46684120:46684265,	46682197	46682290	46682257	46682257	Frame_Shift_Del	G	-	p.P137fs
LIHC	TCGA-DD-A39Y-01	TFAP2B	ENST00000263046.4,ENST00000393655.3	chr6	50791119:50791578:50796331:50796392:50803773:50803993,	50796332	50796392	50796386	50796386	Frame_Shift_Del	A	-	p.K209fs
LIHC	TCGA-DD-A39Y-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51524613	51524613	Frame_Shift_Del	A	-	p.F3437fs
LIHC	TCGA-DD-A39Y-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51656033:51656171:51695658:51695787:51701201:51701267,	51695659	51695787	51695740	51695740	Frame_Shift_Del	T	-	p.T2741fs
LIHC	TCGA-DD-A39Y-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51751930:51752043:51768394:51768525:51768783:51768840,	51768395	51768525	51768495	51768495	Frame_Shift_Del	T	-	p.N2300fs
LIHC	TCGA-DD-A39Y-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52880880:52881048:52883127:52883299:52884024:52884157,	52883128	52883299	52883251	52883251	Frame_Shift_Del	G	-	p.P180fs
LIHC	TCGA-DD-A39Y-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52883127:52883299:52884024:52884157:52895862:52895942,	52884025	52884157	52884057	52884057	Frame_Shift_Del	T	-	p.K153fs
LIHC	TCGA-DD-A39Y-01	ELOVL5	ENST00000304434.6,ENST00000542638.1	chr6	53140976:53141054:53156573:53156761:53160439:53160505,	53156574	53156761	53156712	53156712	Frame_Shift_Del	A	-	p.F36fs
LIHC	TCGA-DD-A39Y-01	GCLC	ENST00000229416.6,ENST00000513939.1,ENST00000514004.1	chr6	53385575:53385758:53387212:53387325:53409293:53409406,	53387213	53387325	53387229	53387229	Frame_Shift_Del	C	-	p.E83fs
LIHC	TCGA-DD-A39Y-01	LRRC1	ENST00000370888.1	chr6	53778651:53778767:53784295:53784468:53785422:53785546,	53784296	53784468	53784418	53784418	Frame_Shift_Del	T	-	p.I410fs
LIHC	TCGA-DD-A39Y-01	MLIP	ENST00000370876.2,ENST00000358276.5	chr6	54054667:54054712:54066902:54067031:54122105:54122159,	54066903	54067031	54066993	54066993	Frame_Shift_Del	A	-	p.K883fs
LIHC	TCGA-DD-A39Y-01	BMP5	ENST00000446683.2	chr6	55620357:55620480:55625254:55625331:55638846:55639041,	55625255	55625331	55625309	55625309	Frame_Shift_Del	T	-	p.K350fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000361203.3,ENST00000446842.2,ENST00000370788.2,ENST00000421834.2,ENST00000370769.4	chr6	56462537:56462804:56463273:56463507:56464866:56465019,	56463274	56463507	56463323	56463323	Frame_Shift_Del	T	-	p.K3929fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56468954	56468954	Frame_Shift_Del	T	-	p.N3458fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469345	56469345	Frame_Shift_Del	T	-	p.S3328fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469569	56469569	Frame_Shift_Del	T	-	p.N3253fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469928	56469928	Frame_Shift_Del	A	-	p.F3133fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470093	56470093	Frame_Shift_Del	T	-	p.K3078fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470405	56470405	Frame_Shift_Del	T	-	p.K2974fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471951	56471951	Frame_Shift_Del	C	-	p.G2459fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473013	56473013	Frame_Shift_Del	A	-	p.L2105fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473598	56473598	Frame_Shift_Del	T	-	p.N1910fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56473906	56473906	Frame_Shift_Del	T	-	p.K1807fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483364	56483364	Frame_Shift_Del	T	-	p.N1823fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483552	56483552	Frame_Shift_Del	T	-	p.K1760fs
LIHC	TCGA-DD-A39Y-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483969	56483969	Frame_Shift_Del	A	-	p.F1621fs
LIHC	TCGA-DD-A39Y-01	BEND6	ENST00000370746.3	chr6	56846508:56846728:56857175:56857353:56879930:56879958,	56857176	56857353	56857291	56857291	Frame_Shift_Del	A	-	p.E79fs
LIHC	TCGA-DD-A39Y-01	ZNF451	ENST00000491832.2,ENST00000370706.4	chr6	57015516:57015660:57017018:57017149:57018658:57018845,	57017019	57017149	57017131	57017131	Frame_Shift_Del	T	-	p.D955fs
LIHC	TCGA-DD-A39Y-01	PRIM2	ENST00000470638.1,ENST00000389488.2,ENST00000607273.1	chr6	57372287:57372355:57393111:57393184:57398131:57398317,	57393112	57393184	57393166	57393166	Frame_Shift_Del	T	-	p.S272fs
LIHC	TCGA-DD-A39Y-01	PHF3	ENST00000509330.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64346015:64346055:64389900:64390062:64394029:64394146,64346015:64346055:64389900:64390062:64401626:64401933,64356523:64356700:64389900:64390062:64394029:64394146,	64389901	64390062	64389979	64389979	Frame_Shift_Del	T	-	p.I108fs
LIHC	TCGA-DD-A39Y-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395187	64395187	Frame_Shift_Del	A	-	p.K522fs
LIHC	TCGA-DD-A39Y-01	PHF3	ENST00000515594.1	chr6	64394029:64395812:64401626:64401933:64404470:64404580,64389900:64390062:64401626:64401933:64404470:64404580,	64401627	64401933	64401661	64401661	Frame_Shift_Del	T	-	p.F742fs
LIHC	TCGA-DD-A39Y-01	COL9A1	ENST00000357250.6,ENST00000370496.3	chr6	71003869:71004266:71009745:71009878:71010011:71010089,	71009746	71009878	71009776	71009776	Frame_Shift_Del	C	-	p.G90fs
LIHC	TCGA-DD-A39Y-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71235776	71235776	Frame_Shift_Del	A	-	p.K998fs
LIHC	TCGA-DD-A39Y-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71235776	71235776	Frame_Shift_Del	A	-	p.K998fs
LIHC	TCGA-DD-A39Y-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71235865	71235865	Frame_Shift_Del	T	-	p.P1026fs
LIHC	TCGA-DD-A39Y-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71235865	71235865	Frame_Shift_Del	T	-	p.P1026fs
LIHC	TCGA-DD-A39Y-01	FAM135A	ENST00000418814.2,ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000505868.1,ENST00000361499.3	chr6	71245962:71246114:71247993:71248104:71266452:71266566,	71247994	71248104	71248017	71248017	Frame_Shift_Del	A	-	p.K1382fs
LIHC	TCGA-DD-A39Y-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71501391:71501472:71508359:71508440,	71501392	71501472	71501458	71501458	Frame_Shift_Del	A	-	p.K161fs
LIHC	TCGA-DD-A39Y-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508387	71508387	Frame_Shift_Del	A	-	p.K176fs
LIHC	TCGA-DD-A39Y-01	SMAP1	ENST00000370452.3,ENST00000316999.5,ENST00000370455.3	chr6	71508359:71508440:71546643:71546731:71562242:71562367,	71546644	71546731	71546674	71546674	Frame_Shift_Del	A	-	p.K204fs
LIHC	TCGA-DD-A39Y-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351534	74351534	Frame_Shift_Del	C	-	p.G135fs
LIHC	TCGA-DD-A39Y-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351629	74351629	Frame_Shift_Del	C	-	p.D104fs
LIHC	TCGA-DD-A39Y-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75833663:75833810:75833970:75834087:75834842:75834989,	75833971	75834087	75833987	75833987	Frame_Shift_Del	T	-	p.K2236fs
LIHC	TCGA-DD-A39Y-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75833663:75833810:75833970:75834087:75834842:75834989,	75833971	75834087	75834013	75834013	Frame_Shift_Del	G	-	p.R2228fs
LIHC	TCGA-DD-A39Y-01	SENP6	ENST00000370014.3,ENST00000327284.8,ENST00000447266.2	chr6	76311939:76312292:76331247:76331341:76332466:76332574,76311939:76312292:76331247:76331341:76333615:76333676,	76331248	76331341	76331286	76331286	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-DD-A39Y-01	SENP6	ENST00000370010.2,ENST00000541192.1,ENST00000370014.3,ENST00000503501.1,ENST00000447266.2	chr6	76423228:76423297:76423390:76423541:76425100:76425593,	76423391	76423541	76423436	76423436	Frame_Shift_Del	T	-	p.S1008fs
LIHC	TCGA-DD-A39Y-01	MYO6	ENST00000369977.3,ENST00000369981.3	chr6	76604962:76604977:76608089:76608128:76617321:76617425,	76608090	76608128	76608118	76608118	Frame_Shift_Del	T	-	p.F1066fs
LIHC	TCGA-DD-A39Y-01	PHIP	ENST00000479165.1,ENST00000275034.4	chr6	79680497:79680605:79688308:79688428:79692602:79692660,	79688309	79688428	79688344	79688344	Frame_Shift_Del	G	-	p.R953fs
LIHC	TCGA-DD-A39Y-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000471036.1,ENST00000510291.1,ENST00000445419.2,ENST00000503631.1	chr6	82891595:82891745:82900789:82900933:82901503:82901571,	82900790	82900933	82900829	82900829	Frame_Shift_Del	A	-	p.L1179fs
LIHC	TCGA-DD-A39Y-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000471036.1,ENST00000510291.1,ENST00000445419.2,ENST00000503631.1	chr6	82891595:82891745:82900789:82900933:82901503:82901571,	82900790	82900933	82900887	82900887	Frame_Shift_Del	T	-	p.M1160fs
LIHC	TCGA-DD-A39Y-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924027	82924027	Frame_Shift_Del	T	-	p.K707fs
LIHC	TCGA-DD-A39Y-01	PGM3	ENST00000505470.1	chr6	83898463:83898517:83900527:83900733:83902897:83902950,83898463:83898517:83900527:83900733:83900905:83901042,83898332:83898513:83900527:83900733:83902897:83902950,	83900528	83900733	83900604	83900604	Frame_Shift_Del	C	-	p.G43fs
LIHC	TCGA-DD-A39Y-01	ME1	ENST00000541327.1,ENST00000369705.3,ENST00000543031.1	chr6	83938544:83938650:83947435:83947549:83949257:83949355,	83947436	83947549	83947505	83947505	Frame_Shift_Del	T	-	p.K319fs
LIHC	TCGA-DD-A39Y-01	ME1	ENST00000369705.3	chr6	84061782:84061858:84108085:84108235:84140595:84140764,84061782:84061858:84108085:84108235:84117486:84117620,	84108086	84108235	84108136	84108136	Frame_Shift_Del	G	-	p.P104fs
LIHC	TCGA-DD-A39Y-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634252	84634252	Frame_Shift_Del	G	-	p.W252fs
LIHC	TCGA-DD-A39Y-01	CYB5R4	ENST00000369681.5,ENST00000479164.1	chr6	84644313:84644454:84645942:84646095:84649774:84649925,	84645943	84646095	84646043	84646043	Frame_Shift_Del	A	-	p.I352fs
LIHC	TCGA-DD-A39Y-01	ZNF292	ENST00000369577.3	chr6	87928313:87928449:87943042:87943245:87953192:87953285,	87943043	87943245	87943051	87943051	Frame_Shift_Del	T	-	p.F183fs
LIHC	TCGA-DD-A39Y-01	ZNF292	ENST00000369577.3	chr6	87928313:87928449:87943042:87943245:87953192:87953285,	87943043	87943245	87943065	87943065	Frame_Shift_Del	G	-	p.E187fs
LIHC	TCGA-DD-A39Y-01	RARS2	ENST00000369536.5	chr6	88239259:88239366:88240501:88240660:88251635:88251712,	88240502	88240660	88240610	88240610	Frame_Shift_Del	T	-	p.K221fs
LIHC	TCGA-DD-A39Y-01	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4,ENST00000417380.2	chr6	88321806:88321966:88326031:88326145:88331071:88331205,	88326032	88326145	88326098	88326098	Frame_Shift_Del	T	-	p.F314fs
LIHC	TCGA-DD-A39Y-01	RNGTT	ENST00000369485.4,ENST00000369475.3	chr6	89479492:89479593:89511282:89511351:89554075:89554198,	89511283	89511351	89511295	89511295	Frame_Shift_Del	A	-	p.F442fs
LIHC	TCGA-DD-A39Y-01	UBE2J1	ENST00000435041.2	chr6	90045020:90045150:90047923:90048029:90048177:90048262,	90047924	90048029	90047978	90047978	Frame_Shift_Del	C	-	p.G125fs
LIHC	TCGA-DD-A39Y-01	RRAGD	ENST00000359203.3,ENST00000369415.4	chr6	90082155:90082304:90087389:90087532:90088942:90089057,	90087390	90087532	90087487	90087487	Frame_Shift_Del	T	-	p.I269fs
LIHC	TCGA-DD-A39Y-01	RRAGD	ENST00000492783.1,ENST00000369415.4	chr6	90088942:90089057:90089886:90090086:90097013:90097115,	90089887	90090086	90090053	90090053	Frame_Shift_Del	G	-	p.L160fs
LIHC	TCGA-DD-A39Y-01	USP45	ENST00000500704.2,ENST00000539675.1,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6,ENST00000369233.2	chr6	99883419:99883722:99885121:99885275:99887644:99887731,	99885122	99885275	99885136	99885136	Frame_Shift_Del	T	-	p.K768fs
LIHC	TCGA-DD-A39Y-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99894094	99894094	Frame_Shift_Del	C	-	p.G518fs
LIHC	TCGA-DD-A39Y-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99894172	99894172	Frame_Shift_Del	T	-	p.K492fs
LIHC	TCGA-DD-A39Y-01	USP45	ENST00000507717.1	chr6	99912955:99913012:99916412:99916494:99924018:99924083,	99916413	99916494	99916446	99916446	Frame_Shift_Del	T	-	p.T328fs
LIHC	TCGA-DD-A39Y-01	ASCC3	ENST00000324696.4,ENST00000369162.2	chr6	101095163:101095327:101098413:101098590:101099435:101099522,	101098414	101098590	101098556	101098556	Frame_Shift_Del	A	-	p.L1038fs
LIHC	TCGA-DD-A39Y-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296173	101296173	Frame_Shift_Del	T	-	p.T218fs
LIHC	TCGA-DD-A39Y-01	HACE1	ENST00000369127.4,ENST00000416605.2,ENST00000517424.1,ENST00000262903.4,ENST00000517995.1	chr6	105192386:105192485:105198215:105198347:105219067:105219264,	105198216	105198347	105198231	105198231	Frame_Shift_Del	A	-	p.F776fs
LIHC	TCGA-DD-A39Y-01	PREP	ENST00000369110.3	chr6	105776703:105776901:105781188:105781380:105800846:105800952,	105781189	105781380	105781361	105781361	Frame_Shift_Del	T	-	p.K281fs
LIHC	TCGA-DD-A39Y-01	ATG5	ENST00000369076.3,ENST00000476518.1,ENST00000369070.1,ENST00000343245.3	chr6	106649846:106649964:106696024:106696119:106727535:106727698,	106696025	106696119	106696071	106696071	Frame_Shift_Del	G	-	p.P176fs
LIHC	TCGA-DD-A39Y-01	QRSL1	ENST00000369046.4	chr6	107100341:107100457:107102604:107102797:107103489:107103607,	107102605	107102797	107102702	107102702	Frame_Shift_Del	C	-	p.S316fs
LIHC	TCGA-DD-A39Y-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107955078	107955078	Frame_Shift_Del	A	-	p.K344fs
LIHC	TCGA-DD-A39Y-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107956410	107956410	Frame_Shift_Del	A	-	p.K789fs
LIHC	TCGA-DD-A39Y-01	SCML4	ENST00000459992.1,ENST00000369022.2,ENST00000426221.1,ENST00000440927.1,ENST00000369021.3,ENST00000369020.3,ENST00000463507.1	chr6	108066152:108066347:108067892:108068093:108070887:108071017,	108067893	108068093	108068059	108068059	Frame_Shift_Del	C	-	p.G49fs
LIHC	TCGA-DD-A39Y-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214702	108214702	Frame_Shift_Del	T	-	p.N553fs
LIHC	TCGA-DD-A39Y-01	ARMC2	ENST00000392644.4,ENST00000368972.3	chr6	109220896:109220995:109225432:109225608:109232101:109232204,	109225433	109225608	109225451	109225451	Frame_Shift_Del	T	-	p.V289fs
LIHC	TCGA-DD-A39Y-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000456101.2	chr6	109771172:109771288:109771502:109771760:109772802:109772903,	109771503	109771760	109771641	109771641	Frame_Shift_Del	A	-	p.F370fs
LIHC	TCGA-DD-A39Y-01	AK9	ENST00000424296.2,ENST00000470564.1	chr6	109818998:109819168:109820246:109820443:109827529:109827621,	109820247	109820443	109820270	109820270	Frame_Shift_Del	T	-	p.M1675fs
LIHC	TCGA-DD-A39Y-01	DDO	ENST00000368924.3	chr6	110712973:110714545:110725976:110726153:110729536:110729645,	110725977	110726153	110726023	110726023	Frame_Shift_Del	T	-	p.T166fs
LIHC	TCGA-DD-A39Y-01	SLC22A16	ENST00000330550.4	chr6	110768075:110768193:110777740:110778006:110778102:110778220,	110777741	110778006	110777862	110777862	Frame_Shift_Del	T	-	p.S138fs
LIHC	TCGA-DD-A39Y-01	CDK19	ENST00000413605.2	chr6	110953232:110953364:110959851:110959909:110988636:110988777,110953232:110953364:110959851:110959909:110964393:110964521,	110959852	110959909	110959899	110959899	Frame_Shift_Del	T	-	p.N156fs
LIHC	TCGA-DD-A39Y-01	AMD1	ENST00000368877.5	chr6	111208707:111208794:111210059:111210186:111211456:111211559,111195987:111196418:111210059:111210186:111211456:111211559,	111210060	111210186	111210172	111210172	Frame_Shift_Del	T	-	p.F104fs
LIHC	TCGA-DD-A39Y-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111636469:111636584:111643771:111643881:111650734:111650941,	111643772	111643881	111643800	111643800	Frame_Shift_Del	C	-	p.A2697fs
LIHC	TCGA-DD-A39Y-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111654325:111654570:111656671:111656813:111665127:111665246,	111656672	111656813	111656697	111656697	Frame_Shift_Del	A	-	p.L2474fs
LIHC	TCGA-DD-A39Y-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111678216:111678328:111680024:111680217:111685055:111685181,	111680025	111680217	111680079	111680079	Frame_Shift_Del	T	-	p.T2262fs
LIHC	TCGA-DD-A39Y-01	TRAF3IP2	ENST00000528599.1,ENST00000532708.1,ENST00000359831.4,ENST00000392556.4,ENST00000340026.6,ENST00000368761.5	chr6	111894097:111894186:111896845:111897024:111901399:111901592,	111896846	111897024	111896860	111896860	Frame_Shift_Del	A	-	p.L396fs
LIHC	TCGA-DD-A39Y-01	TRAF3IP2	ENST00000528599.1,ENST00000532708.1,ENST00000359831.4,ENST00000392556.4,ENST00000340026.6,ENST00000368761.5	chr6	111894097:111894186:111896845:111897024:111901399:111901592,	111896846	111897024	111896902	111896902	Frame_Shift_Del	G	-	p.P382fs
LIHC	TCGA-DD-A39Y-01	FYN	ENST00000368682.3,ENST00000467921.2,ENST00000538466.1,ENST00000368678.4,ENST00000229470.5,ENST00000229471.4,ENST00000368667.2,ENST00000354650.3,ENST00000356013.2	chr6	111982962:111983150:111995701:111995833:112015577:112015731,	111995702	111995833	111995751	111995751	Frame_Shift_Del	A	-	p.F452fs
LIHC	TCGA-DD-A39Y-01	FYN	ENST00000496864.2,ENST00000476769.2,ENST00000368667.2,ENST00000354650.3	chr6	112017502:112017659:112021306:112021471:112024087:112024189,	112021307	112021471	112021319	112021319	Frame_Shift_Del	C	-	p.E284fs
LIHC	TCGA-DD-A39Y-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000521693.1,ENST00000230538.7,ENST00000604740.1,ENST00000522006.1	chr6	112443263:112443404:112450123:112450277:112451077:112451190,	112450124	112450277	112450158	112450158	Frame_Shift_Del	T	-	p.N1418fs
LIHC	TCGA-DD-A39Y-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000521693.1,ENST00000230538.7,ENST00000604740.1,ENST00000522006.1	chr6	112443263:112443404:112450123:112450277:112451077:112451190,	112450124	112450277	112450248	112450248	Frame_Shift_Del	A	-	p.F1388fs
LIHC	TCGA-DD-A39Y-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112454550:112454689:112455668:112455811:112457324:112457456,	112455669	112455811	112455781	112455781	Frame_Shift_Del	T	-	p.M1149fs
LIHC	TCGA-DD-A39Y-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949374	116949374	Frame_Shift_Del	T	-	p.F502fs
LIHC	TCGA-DD-A39Y-01	GPRC6A	ENST00000310357.3	chr6	117121746:117121959:117127532:117128369:117130476:117130780,	117127533	117128369	117128075	117128075	Frame_Shift_Del	T	-	p.I266fs
LIHC	TCGA-DD-A39Y-01	GPRC6A	ENST00000530250.1	chr6	117121746:117121959:117128057:117128369:117130476:117130780,	117128058	117128369	117128075	117128075	Frame_Shift_Del	T	-	p.I266fs
LIHC	TCGA-DD-A39Y-01	DCBLD1	ENST00000534777.1,ENST00000296955.8,ENST00000338728.5	chr6	117860471:117860542:117861830:117861978:117862080:117862188,	117861831	117861978	117861839	117861839	Frame_Shift_Del	G	-	p.Q370fs
LIHC	TCGA-DD-A39Y-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118886884	118886884	Frame_Shift_Del	T	-	p.K276fs
LIHC	TCGA-DD-A39Y-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118887049	118887049	Frame_Shift_Del	T	-	p.K221fs
LIHC	TCGA-DD-A39Y-01	MCM9	ENST00000316316.6,ENST00000316068.3	chr6	119232814:119232934:119234459:119234585:119238725:119238926,	119234460	119234585	119234497	119234497	Frame_Shift_Del	C	-	p.G331fs
LIHC	TCGA-DD-A39Y-01	FAM184A	ENST00000475529.2	chr6	119281267:119281349:119282925:119283128:119285831:119285905,119281267:119281349:119282925:119283128:119287999:119288117,119281933:119282028:119282925:119283128:119285831:119285936,	119282926	119283128	119282929	119282929	Frame_Shift_Del	A	-	p.L1113fs
LIHC	TCGA-DD-A39Y-01	FAM184A	ENST00000368475.4,ENST00000521531.1,ENST00000352896.5,ENST00000522284.1,ENST00000338891.7	chr6	119337911:119338109:119341142:119341324:119344109:119344245,	119341143	119341324	119341254	119341254	Frame_Shift_Del	T	-	p.K407fs
LIHC	TCGA-DD-A39Y-01	MAN1A1	ENST00000368468.3	chr6	119532010:119532095:119569424:119569519:119611847:119611928,119525923:119526047:119569424:119569519:119611847:119611928,	119569425	119569519	119569484	119569484	Frame_Shift_Del	T	-	p.K311fs
LIHC	TCGA-DD-A39Y-01	SMPDL3A	ENST00000487215.1	chr6	123110470:123110603:123116821:123117035:123117968:123118113,	123116822	123117035	123116886	123116886	Frame_Shift_Del	A	-	p.T59fs
LIHC	TCGA-DD-A39Y-01	SMPDL3A	ENST00000368440.4,ENST00000539041.1	chr6	123117974:123118113:123122454:123122551:123124808:123124978,	123122455	123122551	123122479	123122479	Frame_Shift_Del	A	-	p.K166fs
LIHC	TCGA-DD-A39Y-01	SMPDL3A	ENST00000368440.4,ENST00000539041.1	chr6	123126053:123126234:123127377:123127502:123130235:123130862,	123127378	123127502	123127438	123127438	Frame_Shift_Del	A	-	p.E327fs
LIHC	TCGA-DD-A39Y-01	TRDN	ENST00000334268.4,ENST00000398178.3	chr6	123594481:123594508:123595785:123595815:123599462:123599492,	123595786	123595815	123595799	123595799	Frame_Shift_Del	T	-	p.K528fs
LIHC	TCGA-DD-A39Y-01	TRDN	ENST00000334268.4,ENST00000398178.3	chr6	123600200:123600227:123637601:123637640:123653023:123653074,	123637602	123637640	123637624	123637624	Frame_Shift_Del	T	-	p.K496fs
LIHC	TCGA-DD-A39Y-01	TRDN	ENST00000334268.4,ENST00000546248.1,ENST00000398178.3	chr6	123837285:123837351:123851650:123851710:123868484:123868517,	123851651	123851710	123851685	123851685	Frame_Shift_Del	T	-	p.K150fs
LIHC	TCGA-DD-A39Y-01	HEY2	ENST00000368365.1,ENST00000368364.3	chr6	126073152:126073236:126075610:126075692:126080262:126082415,	126075611	126075692	126075655	126075655	Frame_Shift_Del	G	-	p.V97fs
LIHC	TCGA-DD-A39Y-01	ECHDC1	ENST00000528402.1	chr6	127637603:127637647:127648146:127648289:127664480:127664493,127636010:127636041:127648146:127648289:127664480:127664493,	127648147	127648289	127648202	127648202	Frame_Shift_Del	T	-	p.N109fs
LIHC	TCGA-DD-A39Y-01	ECHDC1	ENST00000368292.6,ENST00000368287.1,ENST00000309620.9,ENST00000368291.2,ENST00000479525.2	chr6	127648155:127648289:127651953:127652175:127664105:127664491,127648155:127648289:127651953:127652175:127663500:127663552,127648155:127648289:127651953:127652175:127664480:127664493,	127651954	127652175	127652056	127652056	Frame_Shift_Del	T	-	p.T46fs
LIHC	TCGA-DD-A39Y-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000495748.1,ENST00000368207.3,ENST00000532331.1	chr6	128563665:128563747:128643183:128643455:128718710:128718762,	128643184	128643455	128643201	128643201	Frame_Shift_Del	A	-	p.W160fs
LIHC	TCGA-DD-A39Y-01	ARHGAP18	ENST00000368149.2	chr6	129939831:129939997:129950497:129950667:129955186:129955250,	129950498	129950667	129950533	129950533	Frame_Shift_Del	T	-	p.I251fs
LIHC	TCGA-DD-A39Y-01	L3MBTL3	ENST00000526019.1,ENST00000533560.1,ENST00000529410.1,ENST00000361794.2,ENST00000368139.2,ENST00000368136.2	chr6	130415409:130415512:130425570:130425720:130442023:130442103,	130425571	130425720	130425608	130425608	Frame_Shift_Del	A	-	p.K592fs
LIHC	TCGA-DD-A39Y-01	ARG1	ENST00000275196.5,ENST00000356962.2,ENST00000368087.3	chr6	131900252:131900425:131902358:131902518:131903760:131903855,	131902359	131902518	131902509	131902509	Frame_Shift_Del	A	-	p.L152fs
LIHC	TCGA-DD-A39Y-01	ARG1	ENST00000275196.5,ENST00000356962.2,ENST00000368087.3	chr6	131903760:131903855:131904199:131904304:131904494:131904538,	131904200	131904304	131904302	131904302	Frame_Shift_Del	A	-	p.G221fs
LIHC	TCGA-DD-A39Y-01	MED23	ENST00000354577.4,ENST00000368068.3,ENST00000540546.1,ENST00000368053.4,ENST00000539158.1,ENST00000403834.3,ENST00000368060.3,ENST00000368058.1	chr6	131940966:131941036:131941767:131941869:131943020:131943119,	131941768	131941869	131941798	131941798	Frame_Shift_Del	T	-	p.K189fs
LIHC	TCGA-DD-A39Y-01	ENPP3	ENST00000414305.1,ENST00000543135.1,ENST00000357639.3,ENST00000358229.5,ENST00000494023.1	chr6	131992387:131992467:131995301:131995421:131996219:131996329,	131995302	131995421	131995352	131995352	Frame_Shift_Del	A	-	p.V231fs
LIHC	TCGA-DD-A39Y-01	ENPP3	ENST00000427707.1,ENST00000427148.2	chr6	131992387:131992467:131995301:131995550:131996219:131996329,	131995302	131995550	131995352	131995352	Frame_Shift_Del	A	-	p.V231fs
LIHC	TCGA-DD-A39Y-01	VNN3	ENST00000414302.2	chr6	133046059:133046118:133047860:133048151:133049879:133050072,133046059:133046118:133047860:133048151:133055391:133055472,	133047861	133048151	133048040	133048040	Frame_Shift_Del	A	-	p.S217fs
LIHC	TCGA-DD-A39Y-01	VNN2	ENST00000326499.6,ENST00000525270.1	chr6	133072283:133072657:133073599:133073888:133076981:133077174,	133073600	133073888	133073701	133073701	Frame_Shift_Del	A	-	p.L242fs
LIHC	TCGA-DD-A39Y-01	VNN2	ENST00000422400.2	chr6	133072283:133072657:133073599:133073716:133073811:133073888,	133073600	133073716	133073701	133073701	Frame_Shift_Del	A	-	p.L242fs
LIHC	TCGA-DD-A39Y-01	SLC18B1	ENST00000275227.4	chr6	133105071:133105228:133108572:133108720:133110902:133110976,	133108573	133108720	133108642	133108642	Frame_Shift_Del	A	-	p.F144fs
LIHC	TCGA-DD-A39Y-01	SLC18B1	ENST00000275227.4	chr6	133105071:133105228:133108572:133108720:133110902:133110976,	133108573	133108720	133108710	133108710	Frame_Shift_Del	G	-	p.R122fs
LIHC	TCGA-DD-A39Y-01	EYA4	ENST00000531861.1,ENST00000367895.5,ENST00000355286.6,ENST00000531901.1,ENST00000525849.1,ENST00000430974.2,ENST00000452339.2,ENST00000355167.3,ENST00000431403.2	chr6	133595918:133595951:133703529:133703579:133767767:133767892,	133703530	133703579	133703558	133703558	Frame_Shift_Del	T	-	p.V21fs
LIHC	TCGA-DD-A39Y-01	EYA4	ENST00000421413.2,ENST00000355286.6,ENST00000525849.1	chr6	133767767:133767892:133777693:133777786:133782251:133782263,	133777694	133777786	133777773	133777773	Frame_Shift_Del	T	-	p.T119fs
LIHC	TCGA-DD-A39Y-01	MYB	ENST00000525940.1,ENST00000526320.1	chr6	135515493:135515598:135516885:135517055:135520045:135520188,	135516886	135517055	135516913	135516913	Frame_Shift_Del	G	-	p.G326fs
LIHC	TCGA-DD-A39Y-01	MYB	ENST00000524588.1,ENST00000528343.1,ENST00000534044.1,ENST00000339290.5,ENST00000527615.1,ENST00000525002.1,ENST00000367814.4,ENST00000367812.2,ENST00000316528.8	chr6	135515493:135515598:135516885:135517140:135520045:135520188,	135516886	135517140	135516913	135516913	Frame_Shift_Del	G	-	p.G326fs
LIHC	TCGA-DD-A39Y-01	AHI1	ENST00000265602.6,ENST00000417892.2,ENST00000475846.2,ENST00000367800.4,ENST00000327035.6,ENST00000457866.2,ENST00000367799.2	chr6	135752345:135752452:135754164:135754394:135759512:135759636,	135754165	135754394	135754198	135754198	Frame_Shift_Del	T	-	p.S745fs
LIHC	TCGA-DD-A39Y-01	PEX7	ENST00000318471.4,ENST00000541292.1	chr6	137167210:137167319:137187764:137187871:137191027:137191141,	137187765	137187871	137187860	137187860	Frame_Shift_Del	A	-	p.K208fs
LIHC	TCGA-DD-A39Y-01	PEX7	ENST00000318471.4,ENST00000541292.1	chr6	137193335:137193391:137219279:137219379:137234595:137235037,	137219280	137219379	137219349	137219349	Frame_Shift_Del	T	-	p.G291fs
LIHC	TCGA-DD-A39Y-01	IL20RA	ENST00000541547.1,ENST00000367746.3,ENST00000316649.5	chr6	137330453:137330629:137332410:137332589:137338104:137338240,	137332411	137332589	137332468	137332468	Frame_Shift_Del	A	-	p.W116fs
LIHC	TCGA-DD-A39Y-01	IFNGR1	ENST00000367739.4,ENST00000543628.1	chr6	137518968:137519776:137522017:137522145:137524635:137524822,	137522018	137522145	137522062	137522062	Frame_Shift_Del	T	-	p.I273fs
LIHC	TCGA-DD-A39Y-01	TNFAIP3	ENST00000237289.4	chr6	138199568:138200488:138201207:138201389:138202171:138204449,	138201208	138201389	138201237	138201237	Frame_Shift_Del	C	-	p.P646fs
LIHC	TCGA-DD-A39Y-01	ECT2L	ENST00000495970.1,ENST00000423192.1,ENST00000541398.1,ENST00000367682.2	chr6	139175162:139175291:139183763:139183856:139186132:139186315,	139183764	139183856	139183821	139183821	Frame_Shift_Del	C	-	p.A419fs
LIHC	TCGA-DD-A39Y-01	REPS1	ENST00000409812.2,ENST00000367663.4,ENST00000450536.2,ENST00000258062.5,ENST00000415951.2,ENST00000529597.1,ENST00000431346.2	chr6	139264649:139264713:139264989:139265152:139265634:139265682,	139264990	139265152	139265065	139265065	Frame_Shift_Del	T	-	p.I281fs
LIHC	TCGA-DD-A39Y-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091954	143091954	Frame_Shift_Del	T	-	p.T1308fs
LIHC	TCGA-DD-A39Y-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143092095	143092095	Frame_Shift_Del	C	-	p.A1261fs
LIHC	TCGA-DD-A39Y-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143092145	143092145	Frame_Shift_Del	T	-	p.K1244fs
LIHC	TCGA-DD-A39Y-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094119	143094119	Frame_Shift_Del	G	-	p.P586fs
LIHC	TCGA-DD-A39Y-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094258	143094258	Frame_Shift_Del	G	-	p.L540fs
LIHC	TCGA-DD-A39Y-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094818	143094818	Frame_Shift_Del	G	-	p.P353fs
LIHC	TCGA-DD-A39Y-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095258	143095258	Frame_Shift_Del	T	-	p.K206fs
LIHC	TCGA-DD-A39Y-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095863	143095863	Frame_Shift_Del	C	-	p.D5fs
LIHC	TCGA-DD-A39Y-01	AIG1	ENST00000367598.5,ENST00000275235.4,ENST00000494282.2,ENST00000357847.4,ENST00000367601.4	chr6	143382083:143382203:143457971:143458127:143486218:143486320,	143457972	143458127	143457987	143457987	Frame_Shift_Del	T	-	p.F54fs
LIHC	TCGA-DD-A39Y-01	PEX3	ENST00000367591.4	chr6	143792693:143792748:143793296:143793465:143795922:143795993,	143793297	143793465	143793338	143793338	Frame_Shift_Del	A	-	p.Q207fs
LIHC	TCGA-DD-A39Y-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000420771.2,ENST00000542769.1,ENST00000367582.3	chr6	144070121:144070202:144074890:144075049:144086397:144086611,	144074891	144075049	144075008	144075008	Frame_Shift_Del	A	-	p.E127fs
LIHC	TCGA-DD-A39Y-01	UTRN	ENST00000367545.3	chr6	144800947:144801118:144803344:144803524:144806520:144806655,	144803345	144803524	144803426	144803426	Frame_Shift_Del	C	-	p.P1197fs
LIHC	TCGA-DD-A39Y-01	STXBP5	ENST00000179882.6,ENST00000321680.6,ENST00000367481.3,ENST00000367480.3	chr6	147599216:147599340:147612229:147612308:147631219:147631374,	147612230	147612308	147612238	147612238	Frame_Shift_Del	T	-	p.L283fs
LIHC	TCGA-DD-A39Y-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700017	149700017	Frame_Shift_Del	A	-	p.R322fs
LIHC	TCGA-DD-A39Y-01	KATNA1	ENST00000367411.2,ENST00000444282.1,ENST00000335643.8	chr6	149953894:149954052:149959521:149959696:149969604:149969829,	149959522	149959696	149959625	149959625	Frame_Shift_Del	C	-	p.G20fs
LIHC	TCGA-DD-A39Y-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150004429	150004429	Frame_Shift_Del	T	-	p.N599fs
LIHC	TCGA-DD-A39Y-01	PCMT1	ENST00000484601.1,ENST00000495487.1,ENST00000367384.2,ENST00000367380.5,ENST00000367378.1,ENST00000486585.1,ENST00000544496.1,ENST00000464889.1	chr6	150094273:150094305:150111089:150111194:150114684:150114768,	150111090	150111194	150111138	150111138	Frame_Shift_Del	A	-	p.K139fs
LIHC	TCGA-DD-A39Y-01	LRP11	ENST00000546019.1	chr6	150164118:150164260:150174138:150174296:150184543:150185162,150164118:150164260:150174138:150174296:150186020:150186199,	150174139	150174296	150174231	150174231	Frame_Shift_Del	C	-	p.V228fs
LIHC	TCGA-DD-A39Y-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151054719:151055228:151089773:151089874:151107525:151107595,	151089774	151089874	151089799	151089799	Frame_Shift_Del	A	-	p.Q146fs
LIHC	TCGA-DD-A39Y-01	PLEKHG1	ENST00000358517.2,ENST00000475490.1,ENST00000367328.1	chr6	151089821:151089874:151107525:151107595:151116991:151117038,	151107526	151107595	151107591	151107591	Frame_Shift_Del	C	-	p.S193fs
LIHC	TCGA-DD-A39Y-01	PLEKHG1	ENST00000358517.2,ENST00000475490.1,ENST00000367328.1	chr6	151140814:151140910:151142330:151142369:151144789:151144812,	151142331	151142369	151142355	151142355	Frame_Shift_Del	T	-	p.V478fs
LIHC	TCGA-DD-A39Y-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151151943	151151943	Frame_Shift_Del	T	-	p.F566fs
LIHC	TCGA-DD-A39Y-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151153068	151153068	Frame_Shift_Del	C	-	p.P941fs
LIHC	TCGA-DD-A39Y-01	MTHFD1L	ENST00000367307.4,ENST00000443074.1	chr6	151206769:151206870:151208980:151209117:151226785:151226897,151206769:151206870:151208980:151209117:151219995:151220043,	151208981	151209117	151209005	151209005	Frame_Shift_Del	T	-	p.I223fs
LIHC	TCGA-DD-A39Y-01	MTHFD1L	ENST00000367308.4	chr6	151206769:151206870:151208977:151209117:151219995:151220043,151206769:151206870:151208977:151209117:151226785:151226897,	151208978	151209117	151209005	151209005	Frame_Shift_Del	T	-	p.I223fs
LIHC	TCGA-DD-A39Y-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670415	151670415	Frame_Shift_Del	A	-	p.K298fs
LIHC	TCGA-DD-A39Y-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151671638	151671638	Frame_Shift_Del	A	-	p.P704fs
LIHC	TCGA-DD-A39Y-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151674622	151674622	Frame_Shift_Del	A	-	p.E1699fs
LIHC	TCGA-DD-A39Y-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151674773	151674773	Frame_Shift_Del	A	-	p.G1749fs
LIHC	TCGA-DD-A39Y-01	RMND1	ENST00000367303.4	chr6	151757580:151757689:151766442:151766960:151773150:151773254,	151766443	151766960	151766726	151766726	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A39Y-01	CCDC170	ENST00000239374.7,ENST00000367290.5	chr6	151869438:151869624:151894308:151894626:151907023:151907224,	151894309	151894626	151894485	151894485	Frame_Shift_Del	A	-	p.T318fs
LIHC	TCGA-DD-A39Y-01	ESR1	ENST00000440973.1	chr6	152023009:152023140:152128977:152129499:152163731:152163922,	152128978	152129499	152129164	152129164	Frame_Shift_Del	G	-	p.L39fs
LIHC	TCGA-DD-A39Y-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367251.3,ENST00000367255.5,ENST00000367256.5,ENST00000367257.4,ENST00000265368.4,ENST00000478916.1,ENST00000539504.1,ENST00000354674.4,ENST00000536990.1,ENST00000460912.2,ENST00000448038.1,ENST00000347037.5,ENST00000409694.2,ENST00000423061.1	chr6	152461084:152461296:152462337:152462464:152464757:152464900,	152462338	152462464	152462398	152462398	Frame_Shift_Del	C	-	p.E8399fs
LIHC	TCGA-DD-A39Y-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152563374:152563575:152565671:152565791:152570295:152570397,	152565672	152565791	152565756	152565756	Frame_Shift_Del	A	-	p.F6536fs
LIHC	TCGA-DD-A39Y-01	SYNE1	ENST00000341594.5,ENST00000466159.2,ENST00000367255.5,ENST00000413186.2,ENST00000265368.4,ENST00000367253.4,ENST00000448038.1,ENST00000423061.1	chr6	152809530:152809638:152819876:152819927:152823767:152823877,	152819877	152819927	152819880	152819880	Frame_Shift_Del	A	-	p.F312fs
LIHC	TCGA-DD-A39Y-01	SYNE1	ENST00000341594.5,ENST00000466159.2,ENST00000367255.5,ENST00000413186.2,ENST00000265368.4,ENST00000367253.4,ENST00000448038.1,ENST00000423061.1	chr6	152809530:152809638:152819876:152819927:152823767:152823877,	152819877	152819927	152819884	152819884	Frame_Shift_Del	T	-	p.N311fs
LIHC	TCGA-DD-A39Y-01	FBXO5	ENST00000367241.3,ENST00000229758.3	chr6	153291663:153292549:153293406:153293589:153294180:153294271,	153293407	153293589	153293482	153293482	Frame_Shift_Del	T	-	p.K293fs
LIHC	TCGA-DD-A39Y-01	MTRF1L	ENST00000461949.1	chr6	153310939:153311230:153312319:153312551:153313991:153314109,	153312320	153312551	153312325	153312325	Frame_Shift_Del	T	-	p.I313fs
LIHC	TCGA-DD-A39Y-01	MTRF1L	ENST00000367233.5,ENST00000464135.1,ENST00000414771.1	chr6	153310939:153311230:153312319:153312456:153313991:153314109,	153312320	153312456	153312325	153312325	Frame_Shift_Del	T	-	p.I313fs
LIHC	TCGA-DD-A39Y-01	SCAF8	ENST00000367178.3,ENST00000464628.1,ENST00000367186.4,ENST00000417268.1,ENST00000461219.1	chr6	155099134:155099179:155108994:155109156:155113956:155113992,	155108995	155109156	155109120	155109120	Frame_Shift_Del	T	-	p.T95fs
LIHC	TCGA-DD-A39Y-01	TIAM2	ENST00000461783.3,ENST00000318981.5,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1	chr6	155448623:155448734:155450351:155451551:155458310:155458746,	155450352	155451551	155451100	155451100	Frame_Shift_Del	C	-	p.S248fs
LIHC	TCGA-DD-A39Y-01	TIAM2	ENST00000461783.3,ENST00000318981.5,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1	chr6	155448623:155448734:155450351:155451551:155458310:155458746,	155450352	155451551	155451163	155451163	Frame_Shift_Del	C	-	p.A269fs
LIHC	TCGA-DD-A39Y-01	ARID1B	ENST00000414678.2	chr6	157431605:157431695:157454161:157454341:157469757:157470085,157405899:157406039:157454161:157454341:157469757:157470085,	157454162	157454341	157454202	157454202	Frame_Shift_Del	G	-	p.Q804fs
LIHC	TCGA-DD-A39Y-01	ARID1B	ENST00000452544.1	chr6	157431605:157431695:157454173:157454341:157469757:157470085,	157454174	157454341	157454202	157454202	Frame_Shift_Del	G	-	p.Q804fs
LIHC	TCGA-DD-A39Y-01	ARID1B	ENST00000478761.2,ENST00000367148.1,ENST00000319584.6,ENST00000275248.4,ENST00000414678.2	chr6	157495159:157495251:157495980:157496139:157502102:157502312,	157495981	157496139	157496011	157496011	Frame_Shift_Del	C	-	p.P1044fs
LIHC	TCGA-DD-A39Y-01	ARID1B	ENST00000478761.2,ENST00000367148.1,ENST00000319584.6,ENST00000275248.4,ENST00000414678.2	chr6	157495159:157495251:157495980:157496139:157502102:157502312,	157495981	157496139	157496018	157496018	Frame_Shift_Del	C	-	p.T1045fs
LIHC	TCGA-DD-A39Y-01	ZDHHC14	ENST00000359775.5,ENST00000414563.2,ENST00000523468.1,ENST00000518214.1	chr6	157963620:157963777:158014019:158014178:158049380:158049406,	158014020	158014178	158014043	158014043	Frame_Shift_Del	G	-	p.G145fs
LIHC	TCGA-DD-A39Y-01	ZDHHC14	ENST00000359775.5,ENST00000414563.2,ENST00000523468.1,ENST00000518214.1	chr6	157963620:157963777:158014019:158014178:158049380:158049406,	158014020	158014178	158014061	158014061	Frame_Shift_Del	C	-	p.P150fs
LIHC	TCGA-DD-A39Y-01	ZDHHC14	ENST00000341375.8,ENST00000359775.5,ENST00000414563.2	chr6	158014040:158014178:158049380:158049518:158053865:158053914,	158049381	158049518	158049504	158049504	Frame_Shift_Del	C	-	p.T230fs
LIHC	TCGA-DD-A39Y-01	ZDHHC14	ENST00000340347.7	chr6	158014040:158014178:158049479:158049518:158053865:158053914,	158049480	158049518	158049504	158049504	Frame_Shift_Del	C	-	p.T230fs
LIHC	TCGA-DD-A39Y-01	SYNJ2	ENST00000367121.3,ENST00000367122.2,ENST00000355585.4	chr6	158487475:158487667:158489678:158489760:158490564:158490705,	158489679	158489760	158489710	158489710	Frame_Shift_Del	G	-	p.V583fs
LIHC	TCGA-DD-A39Y-01	SERAC1	ENST00000607742.1,ENST00000367104.3,ENST00000607071.1,ENST00000367101.1,ENST00000367102.2	chr6	158549139:158549302:158551404:158551518:158564087:158564216,	158551405	158551518	158551473	158551473	Frame_Shift_Del	T	-	p.S262fs
LIHC	TCGA-DD-A39Y-01	TULP4	ENST00000367097.3,ENST00000367094.2	chr6	158914604:158914749:158915784:158915878:158919700:158919844,	158915785	158915878	158915819	158915819	Frame_Shift_Del	G	-	p.W604fs
LIHC	TCGA-DD-A39Y-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923160	158923160	Frame_Shift_Del	C	-	p.A822fs
LIHC	TCGA-DD-A39Y-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923198	158923198	Frame_Shift_Del	C	-	p.P836fs
LIHC	TCGA-DD-A39Y-01	SYTL3	ENST00000297239.9,ENST00000367081.3,ENST00000360448.3	chr6	159178242:159178413:159181671:159181777:159183107:159183210,	159181672	159181777	159181724	159181724	Frame_Shift_Del	G	-	p.R454fs
LIHC	TCGA-DD-A39Y-01	C6orf99	ENST00000367073.4,ENST00000608817.1	chr6	159294559:159294653:159316252:159316398:159330998:159331268,	159316253	159316398	159316291	159316291	Frame_Shift_Del	G	-	p.P85fs
LIHC	TCGA-DD-A39Y-01	RSPH3	ENST00000252655.1	chr6	159403516:159403720:159414870:159414958:159420466:159420813,159407311:159407453:159414870:159414958:159420466:159420638,	159414871	159414958	159414912	159414912	Frame_Shift_Del	C	-	p.V55fs
LIHC	TCGA-DD-A39Y-01	TCP1	ENST00000544255.1,ENST00000392168.2,ENST00000321394.7	chr6	160200016:160200293:160200658:160200822:160200926:160201112,	160200659	160200822	160200661	160200661	Frame_Shift_Del	T	-	p.K484fs
LIHC	TCGA-DD-A39Y-01	TCP1	ENST00000544255.1,ENST00000539756.1,ENST00000420894.2,ENST00000392168.2,ENST00000321394.7	chr6	160200947:160201119:160201474:160201598:160201966:160202142,	160201475	160201598	160201535	160201535	Frame_Shift_Del	C	-	p.G346fs
LIHC	TCGA-DD-A39Y-01	TCP1	ENST00000544255.1,ENST00000539756.1,ENST00000420894.2,ENST00000392168.2,ENST00000321394.7	chr6	160201474:160201598:160201966:160202142:160204972:160205099,	160201967	160202142	160201997	160201997	Frame_Shift_Del	C	-	p.D315fs
LIHC	TCGA-DD-A39Y-01	TCP1	ENST00000544255.1,ENST00000539756.1,ENST00000420894.2,ENST00000392168.2,ENST00000321394.7	chr6	160201474:160201598:160201966:160202142:160204972:160205099,	160201967	160202142	160202000	160202000	Frame_Shift_Del	T	-	p.R314fs
LIHC	TCGA-DD-A39Y-01	IGF2R	ENST00000356956.1	chr6	160479937:160480130:160481578:160481749:160482534:160482678,	160481579	160481749	160481582	160481582	Frame_Shift_Del	C	-	p.T1032fs
LIHC	TCGA-DD-A39Y-01	IGF2R	ENST00000356956.1,ENST00000475584.1	chr6	160517478:160517657:160523550:160523703:160524777:160524847,	160523551	160523703	160523576	160523576	Frame_Shift_Del	G	-	p.G2290fs
LIHC	TCGA-DD-A39Y-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470190	161470190	Frame_Shift_Del	A	-	p.N296fs
LIHC	TCGA-DD-A39Y-01	PACRG	ENST00000366888.2,ENST00000337019.3,ENST00000366889.2	chr6	163149191:163149423:163235178:163235313:163483181:163483353,	163235179	163235313	163235273	163235273	Frame_Shift_Del	C	-	p.A84fs
LIHC	TCGA-DD-A39Y-01	QKI	ENST00000453779.2,ENST00000361758.4	chr6	163983013:163983101:163984451:163984751:163987752:163987827,163983013:163983101:163984451:163984751:163986977:163987827,	163984452	163984751	163984463	163984463	Frame_Shift_Del	T	-	p.F216fs
LIHC	TCGA-DD-A39Y-01	SFT2D1	ENST00000478705.1,ENST00000487841.1,ENST00000488773.1,ENST00000361731.3	chr6	166741763:166741845:166742994:166743077:166743648:166743735,	166742995	166743077	166743036	166743036	Frame_Shift_Del	A	-	p.F64fs
LIHC	TCGA-DD-A39Y-01	RPS6KA2	ENST00000509742.1,ENST00000265678.4,ENST00000481261.2,ENST00000510118.1,ENST00000405189.3,ENST00000503859.1	chr6	166827281:166827419:166831712:166831830:166833369:166833446,	166831713	166831830	166831813	166831813	Frame_Shift_Del	T	-	p.N638fs
LIHC	TCGA-DD-A39Y-01	KIF25	ENST00000351261.3	chr6	168440744:168440896:168442648:168442831:168445506:168445743,	168442649	168442831	168442685	168442685	Frame_Shift_Del	A	-	p.Q228fs
LIHC	TCGA-DD-A39Y-01	FRMD1	ENST00000509157.1,ENST00000283309.6,ENST00000537786.1,ENST00000440994.2	chr6	168463350:168463419:168463573:168463639:168464280:168464436,168462486:168462661:168463573:168463639:168464280:168464436,	168463574	168463639	168463619	168463619	Frame_Shift_Del	G	-	p.P275fs
LIHC	TCGA-DD-A39Y-01	THBS2	ENST00000366787.3	chr6	169639693:169639790:169640546:169640687:169641856:169642053,	169640547	169640687	169640647	169640647	Frame_Shift_Del	G	-	p.P312fs
LIHC	TCGA-DD-A39Y-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170626822	170626822	Frame_Shift_Del	T	-	p.I115fs
LIHC	TCGA-DD-A39Y-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170627418	170627418	Frame_Shift_Del	T	-	p.F315fs
LIHC	TCGA-DD-A39Y-01	FAM120B	ENST00000252510.9,ENST00000540480.1,ENST00000476287.1,ENST00000537664.1	chr6	170667313:170667406:170697374:170697581:170700100:170700209,	170697375	170697581	170697389	170697389	Frame_Shift_Del	C	-	p.N766fs
LIHC	TCGA-DD-A39Y-01	PDCD2	ENST00000167218.5	chr6	170886681:170886805:170887944:170888058:170892144:170892276,	170887945	170888058	170887975	170887975	Frame_Shift_Del	G	-	p.P282fs
LIHC	TCGA-DD-A39Y-01	FAM20C	ENST00000313766.5	chr7	195624:195732:208897:208976:286380:286473,	208898	208976	208908	208908	Frame_Shift_Del	G	-	p.S265fs
LIHC	TCGA-DD-A39Y-01	PDGFA	ENST00000354513.5	chr7	538129:538211:540067:540136:540752:540879,	540068	540136	540104	540104	Frame_Shift_Del	T	-	p.R205fs
LIHC	TCGA-DD-A39Y-01	PRKAR1B	ENST00000400758.2,ENST00000544935.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1	chr7	591025:591107:618892:619014:624144:624205,	618893	619014	618940	618940	Frame_Shift_Del	T	-	p.I282fs
LIHC	TCGA-DD-A39Y-01	CYP2W1	ENST00000308919.7,ENST00000340150.6	chr7	1024801:1024959:1026259:1026433:1026742:1026881,	1026260	1026433	1026414	1026414	Frame_Shift_Del	C	-	p.A211fs
LIHC	TCGA-DD-A39Y-01	MICALL2	ENST00000413446.1	chr7	1478560:1478631:1479560:1479721:1480226:1480320,1478475:1478627:1479560:1479721:1480226:1480320,	1479561	1479721	1479613	1479613	Frame_Shift_Del	G	-	p.P638fs
LIHC	TCGA-DD-A39Y-01	INTS1	ENST00000493446.1,ENST00000389470.4,ENST00000404767.3	chr7	1510481:1510591:1510768:1510860:1511206:1511277,	1510769	1510860	1510797	1510797	Frame_Shift_Del	C	-	p.A2311fs
LIHC	TCGA-DD-A39Y-01	INTS1	ENST00000389470.4	chr7	1524733:1524838:1524925:1525162:1526260:1526410,	1524926	1525162	1525008	1525008	Frame_Shift_Del	C	-	p.G1187fs
LIHC	TCGA-DD-A39Y-01	INTS1	ENST00000468115.1,ENST00000404767.3	chr7	1524733:1524838:1524925:1525105:1526260:1526410,	1524926	1525105	1525008	1525008	Frame_Shift_Del	C	-	p.G1187fs
LIHC	TCGA-DD-A39Y-01	INTS1	ENST00000389470.4	chr7	1524733:1524838:1524925:1525162:1526260:1526410,	1524926	1525162	1525046	1525046	Frame_Shift_Del	G	-	p.P1174fs
LIHC	TCGA-DD-A39Y-01	INTS1	ENST00000468115.1,ENST00000404767.3	chr7	1524733:1524838:1524925:1525105:1526260:1526410,	1524926	1525105	1525046	1525046	Frame_Shift_Del	G	-	p.P1174fs
LIHC	TCGA-DD-A39Y-01	BRAT1	ENST00000340611.4	chr7	2579177:2579276:2579419:2579522:2580612:2580658,	2579420	2579522	2579441	2579441	Frame_Shift_Del	G	-	p.L493fs
LIHC	TCGA-DD-A39Y-01	IQCE	ENST00000490913.1,ENST00000476665.1,ENST00000404984.1,ENST00000325997.9,ENST00000402050.2,ENST00000438376.2,ENST00000470731.1,ENST00000325979.7	chr7	2629540:2629740:2632655:2632760:2634519:2634610,	2632656	2632760	2632686	2632686	Frame_Shift_Del	G	-	p.K425fs
LIHC	TCGA-DD-A39Y-01	TTYH3	ENST00000258796.7	chr7	2687051:2687272:2687592:2687688:2689200:2689273,	2687593	2687688	2687662	2687662	Frame_Shift_Del	C	-	p.I232fs
LIHC	TCGA-DD-A39Y-01	TTYH3	ENST00000407643.1,ENST00000498454.1,ENST00000403167.1,ENST00000258796.7	chr7	2692554:2692644:2695725:2695818:2696031:2696168,	2695726	2695818	2695728	2695728	Frame_Shift_Del	C	-	p.D341fs
LIHC	TCGA-DD-A39Y-01	AMZ1	ENST00000312371.4	chr7	2748221:2748350:2748708:2748878:2749273:2749450,	2748709	2748878	2748758	2748758	Frame_Shift_Del	G	-	p.S217fs
LIHC	TCGA-DD-A39Y-01	FOXK1	ENST00000328914.4	chr7	4721939:4722499:4780468:4780654:4794089:4794246,	4780469	4780654	4780576	4780576	Frame_Shift_Del	C	-	p.S223fs
LIHC	TCGA-DD-A39Y-01	AP5Z1	ENST00000348624.4,ENST00000401897.1,ENST00000496303.1	chr7	4820809:4820943:4821198:4821385:4822946:4823057,	4821199	4821385	4821327	4821327	Frame_Shift_Del	G	-	p.W103fs
LIHC	TCGA-DD-A39Y-01	RADIL	ENST00000473130.1	chr7	4856869:4856982:4862024:4862181:4871771:4871809,	4862025	4862181	4862113	4862113	Frame_Shift_Del	C	-	p.W509fs
LIHC	TCGA-DD-A39Y-01	RADIL	ENST00000538469.1,ENST00000484211.1,ENST00000445392.1,ENST00000399583.3	chr7	4856869:4856982:4862024:4862185:4871771:4871809,	4862025	4862185	4862113	4862113	Frame_Shift_Del	C	-	p.W509fs
LIHC	TCGA-DD-A39Y-01	TNRC18	ENST00000328270.3,ENST00000430969.1	chr7	5352741:5353494:5354614:5354779:5355586:5355703,	5354615	5354779	5354617	5354617	Frame_Shift_Del	C	-	p.G2343fs
LIHC	TCGA-DD-A39Y-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5385192:5385441:5391449:5391725:5396546:5396907,	5391450	5391725	5391675	5391675	Frame_Shift_Del	G	-	p.Q1749fs
LIHC	TCGA-DD-A39Y-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5399028:5399200:5401224:5401353:5401527:5401658,	5401225	5401353	5401259	5401259	Frame_Shift_Del	G	-	p.R1543fs
LIHC	TCGA-DD-A39Y-01	ACTB	ENST00000477812.1	chr7	5568323:5568350:5568791:5569294:5570154:5570235,	5568792	5569294	5568827	5568827	Frame_Shift_Del	G	-	p.L110fs
LIHC	TCGA-DD-A39Y-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5781281	5781281	Frame_Shift_Del	C	-	p.A123fs
LIHC	TCGA-DD-A39Y-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6027157	6027157	Frame_Shift_Del	T	-	p.K413fs
LIHC	TCGA-DD-A39Y-01	EIF2AK1	ENST00000536084.1,ENST00000199389.6	chr7	6078190:6078302:6080522:6080850:6082563:6082621,	6080523	6080850	6080772	6080772	Frame_Shift_Del	T	-	p.K290fs
LIHC	TCGA-DD-A39Y-01	RAC1	ENST00000348035.4,ENST00000497741.1,ENST00000356142.4,ENST00000473564.1,ENST00000488373.1	chr7	6439756:6439819:6441498:6441658:6441946:6441996,	6441499	6441658	6441598	6441598	Frame_Shift_Del	A	-	p.K130fs
LIHC	TCGA-DD-A39Y-01	DAGLB	ENST00000436575.1,ENST00000428902.2,ENST00000297056.6	chr7	6464382:6464466:6465618:6465745:6472467:6472590,6464382:6464466:6465618:6465745:6470110:6470238,	6465619	6465745	6465648	6465648	Frame_Shift_Del	C	-	p.D343fs
LIHC	TCGA-DD-A39Y-01	RSPH10B2	ENST00000359718.3,ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6803558:6803732:6805336:6805422:6806387:6806508,	6805337	6805422	6805400	6805400	Frame_Shift_Del	A	-	p.K214fs
LIHC	TCGA-DD-A39Y-01	RSPH10B2	ENST00000359718.3,ENST00000485920.2,ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6831534:6831628:6836198:6836397:6837993:6838215,	6836199	6836397	6836358	6836358	Frame_Shift_Del	C	-	p.A798fs
LIHC	TCGA-DD-A39Y-01	C1GALT1	ENST00000419721.1,ENST00000436587.2	chr7	7222260:7222451:7273933:7274170:7277885:7277965,	7273934	7274170	7273974	7273974	Frame_Shift_Del	T	-	p.N8fs
LIHC	TCGA-DD-A39Y-01	COL28A1	ENST00000399429.3,ENST00000444268.1	chr7	7483215:7483284:7484048:7484120:7491949:7492018,	7484049	7484120	7484100	7484100	Frame_Shift_Del	C	-	p.G510fs
LIHC	TCGA-DD-A39Y-01	MIOS	ENST00000405785.1,ENST00000340080.4	chr7	7613728:7613827:7622748:7623003:7625266:7625436,	7622749	7623003	7622886	7622886	Frame_Shift_Del	T	-	p.F511fs
LIHC	TCGA-DD-A39Y-01	MIOS	ENST00000405785.1,ENST00000340080.4,ENST00000493227.1	chr7	7628128:7628194:7629035:7629194:7634610:7634763,	7629036	7629194	7629169	7629169	Frame_Shift_Del	A	-	p.Q673fs
LIHC	TCGA-DD-A39Y-01	RPA3	ENST00000396682.2,ENST00000223129.4	chr7	7677494:7677603:7678700:7678775:7679950:7680208,	7678701	7678775	7678726	7678726	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-DD-A39Y-01	RPA3	ENST00000396682.2,ENST00000223129.4	chr7	7677494:7677603:7678700:7678775:7679950:7680208,	7678701	7678775	7678732	7678732	Frame_Shift_Del	C	-	p.G48fs
LIHC	TCGA-DD-A39Y-01	PHF14	ENST00000476009.1,ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11030329:11030474:11053373:11053533:11062494:11062606,	11053374	11053533	11053509	11053509	Frame_Shift_Del	T	-	p.I394fs
LIHC	TCGA-DD-A39Y-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975473	13975473	Frame_Shift_Del	G	-	p.P120fs
LIHC	TCGA-DD-A39Y-01	AGMO	ENST00000342526.3	chr7	15405138:15405244:15405764:15405847:15425070:15425187,	15405765	15405847	15405772	15405772	Frame_Shift_Del	C	-	p.D384fs
LIHC	TCGA-DD-A39Y-01	ANKMY2	ENST00000306999.2,ENST00000447802.1	chr7	16644345:16644474:16649254:16649390:16650173:16650388,	16649255	16649390	16649381	16649381	Frame_Shift_Del	T	-	p.K252fs
LIHC	TCGA-DD-A39Y-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409389.1,ENST00000409076.2	chr7	17854456:17854567:17855804:17855912:17861131:17861271,	17855805	17855912	17855827	17855827	Frame_Shift_Del	T	-	p.K655fs
LIHC	TCGA-DD-A39Y-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409389.1,ENST00000409076.2	chr7	17854456:17854567:17855804:17855912:17861131:17861271,	17855805	17855912	17855872	17855872	Frame_Shift_Del	T	-	p.K640fs
LIHC	TCGA-DD-A39Y-01	HDAC9	ENST00000456174.2,ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000405010.3,ENST00000523867.1	chr7	18633530:18633652:18674249:18674365:18684293:18684416,18668972:18669104:18674249:18674365:18684293:18684416,	18674250	18674365	18674325	18674325	Frame_Shift_Del	A	-	p.E288fs
LIHC	TCGA-DD-A39Y-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000401921.1,ENST00000523867.1,ENST00000461159.2	chr7	18788627:18788761:18801779:18801900:18806728:18806778,	18801780	18801900	18801881	18801881	Frame_Shift_Del	G	-	p.L712fs
LIHC	TCGA-DD-A39Y-01	TWISTNB	ENST00000222567.5	chr7	19738187:19738350:19739694:19739903:19744401:19744543,	19739695	19739903	19739829	19739829	Frame_Shift_Del	T	-	p.K157fs
LIHC	TCGA-DD-A39Y-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198977	20198977	Frame_Shift_Del	T	-	p.K336fs
LIHC	TCGA-DD-A39Y-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20766666:20766763:20767937:20768078:20778605:20778762,	20767938	20768078	20768017	20768017	Frame_Shift_Del	G	-	p.G936fs
LIHC	TCGA-DD-A39Y-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20767937:20768078:20778605:20778762:20782499:20782697,	20778606	20778762	20778608	20778608	Frame_Shift_Del	T	-	p.V957fs
LIHC	TCGA-DD-A39Y-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21726999:21727145:21730382:21730499:21737692:21737831,	21730383	21730499	21730493	21730493	Frame_Shift_Del	T	-	p.L2019fs
LIHC	TCGA-DD-A39Y-01	RAPGEF5	ENST00000488366.1,ENST00000401957.2,ENST00000344041.6	chr7	22165221:22165276:22170654:22170719:22175655:22175690,	22170655	22170719	22170690	22170690	Frame_Shift_Del	T	-	p.T663fs
LIHC	TCGA-DD-A39Y-01	FAM126A	ENST00000409923.1,ENST00000432176.2,ENST00000440481.1	chr7	23015828:23015924:23016311:23016427:23016959:23017040,	23016312	23016427	23016382	23016382	Frame_Shift_Del	G	-	p.Q154fs
LIHC	TCGA-DD-A39Y-01	FAM126A	ENST00000409923.1,ENST00000432176.2,ENST00000440481.1	chr7	23016959:23017040:23017887:23018067:23023562:23023664,	23017888	23018067	23017971	23017971	Frame_Shift_Del	A	-	p.W84fs
LIHC	TCGA-DD-A39Y-01	KLHL7	ENST00000322275.5,ENST00000339077.5	chr7	23157529:23157583:23163395:23163498:23164306:23164400,23145735:23145765:23163395:23163498:23164306:23164400,	23163396	23163498	23163434	23163434	Frame_Shift_Del	A	-	p.R31fs
LIHC	TCGA-DD-A39Y-01	KLHL7	ENST00000322275.5,ENST00000339077.5	chr7	23157529:23157583:23163395:23163498:23164306:23164400,23145735:23145765:23163395:23163498:23164306:23164400,	23163396	23163498	23163476	23163476	Frame_Shift_Del	T	-	p.H45fs
LIHC	TCGA-DD-A39Y-01	GPNMB	ENST00000258733.4,ENST00000539136.1	chr7	23299598:23299757:23300074:23300392:23306099:23306234,23299598:23299757:23300074:23300392:23306135:23306234,	23300075	23300392	23300230	23300230	Frame_Shift_Del	G	-	p.G286fs
LIHC	TCGA-DD-A39Y-01	IGF2BP3	ENST00000476938.1,ENST00000258729.3	chr7	23401308:23401360:23458394:23458443:23508100:23508161,	23458395	23458443	23458405	23458405	Frame_Shift_Del	A	-	p.L92fs
LIHC	TCGA-DD-A39Y-01	CCDC126	ENST00000409765.1	chr7	23637585:23637670:23650789:23651172:23682549:23682555,23637133:23637224:23650789:23651172:23682549:23682555,	23650790	23651172	23650955	23650955	Frame_Shift_Del	A	-	p.R7fs
LIHC	TCGA-DD-A39Y-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775341	23775341	Frame_Shift_Del	A	-	p.E200fs
LIHC	TCGA-DD-A39Y-01	MPP6	ENST00000222644.5	chr7	24613631:24613897:24663284:24663403:24681334:24681431,24613084:24613212:24663284:24663403:24681334:24681431,	24663285	24663403	24663367	24663367	Frame_Shift_Del	A	-	p.G27fs
LIHC	TCGA-DD-A39Y-01	OSBPL3	ENST00000352860.1,ENST00000431825.2,ENST00000353930.1	chr7	24911601:24911688:24931995:24932240:25019504:25019760,	24931996	24932240	24932053	24932053	Frame_Shift_Del	T	-	p.K13fs
LIHC	TCGA-DD-A39Y-01	C7orf31	ENST00000443822.1,ENST00000283905.3,ENST00000409280.1	chr7	25198119:25198149:25200807:25200879:25207907:25208084,	25200808	25200879	25200833	25200833	Frame_Shift_Del	T	-	p.S120fs
LIHC	TCGA-DD-A39Y-01	C7orf31	ENST00000443822.1,ENST00000283905.3,ENST00000409280.1	chr7	25198119:25198149:25200807:25200879:25207907:25208084,	25200808	25200879	25200857	25200857	Frame_Shift_Del	A	-	p.Y113fs
LIHC	TCGA-DD-A39Y-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26236426:26236637:26236934:26237081:26237241:26237350,	26236935	26237081	26236971	26236971	Frame_Shift_Del	C	-	p.G88fs
LIHC	TCGA-DD-A39Y-01	HNRNPA2B1	ENST00000356674.7	chr7	26236934:26237081:26237241:26237352:26240191:26240366,	26237242	26237352	26237285	26237285	Frame_Shift_Del	A	-	p.L37fs
LIHC	TCGA-DD-A39Y-01	SKAP2	ENST00000345317.2,ENST00000539623.1	chr7	26709709:26709811:26724354:26724467:26729903:26729981,	26724355	26724467	26724438	26724438	Frame_Shift_Del	A	-	p.Y302fs
LIHC	TCGA-DD-A39Y-01	HOXA3	ENST00000317201.2	chr7	27146630:27148339:27149733:27150379:27162177:27162261,	27149734	27150379	27150209	27150209	Frame_Shift_Del	G	-	p.P17fs
LIHC	TCGA-DD-A39Y-01	TAX1BP1	ENST00000396319.2,ENST00000543117.1,ENST00000265393.6,ENST00000416801.2,ENST00000433216.2	chr7	27835737:27835838:27839583:27839709:27855967:27856013,	27839584	27839709	27839625	27839625	Frame_Shift_Del	A	-	p.A560fs
LIHC	TCGA-DD-A39Y-01	TAX1BP1	ENST00000396319.2,ENST00000543117.1,ENST00000265393.6,ENST00000416801.2,ENST00000433216.2	chr7	27835737:27835838:27839583:27839709:27855967:27856013,	27839584	27839709	27839638	27839638	Frame_Shift_Del	A	-	p.K565fs
LIHC	TCGA-DD-A39Y-01	TAX1BP1	ENST00000409980.1,ENST00000457186.2	chr7	27839583:27839709:27842727:27842799:27855967:27856013,	27842728	27842799	27842780	27842780	Frame_Shift_Del	A	-	p.E606fs
LIHC	TCGA-DD-A39Y-01	CHN2	ENST00000474070.1,ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000546235.1	chr7	29437988:29438102:29440158:29440444:29519894:29519972,	29440159	29440444	29440359	29440359	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-DD-A39Y-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30491196	30491196	Frame_Shift_Del	G	-	p.L613fs
LIHC	TCGA-DD-A39Y-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30492073	30492073	Frame_Shift_Del	C	-	p.G320fs
LIHC	TCGA-DD-A39Y-01	GGCT	ENST00000409436.1,ENST00000426081.1	chr7	30536692:30536851:30538418:30538554:30540151:30540296,30537356:30537512:30538418:30538554:30540151:30540296,	30538419	30538554	30538538	30538538	Frame_Shift_Del	T	-	p.S102fs
LIHC	TCGA-DD-A39Y-01	ADCYAP1R1	ENST00000409489.1	chr7	31132302:31132349:31139740:31139824:31142850:31142980,31135280:31135364:31139740:31139824:31142850:31142980,	31139741	31139824	31139815	31139815	Frame_Shift_Del	C	-	p.T402fs
LIHC	TCGA-DD-A39Y-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142962	31142962	Frame_Shift_Del	G	-	p.L386fs
LIHC	TCGA-DD-A39Y-01	AVL9	ENST00000404479.1,ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32588458:32588530:32590945:32591035:32591840:32591862,	32590946	32591035	32590969	32590969	Frame_Shift_Del	A	-	p.A132fs
LIHC	TCGA-DD-A39Y-01	BBS9	ENST00000482941.1	chr7	33169178:33169653:33185880:33185976:33192312:33192448,	33185881	33185976	33185922	33185922	Frame_Shift_Del	T	-	p.F20fs
LIHC	TCGA-DD-A39Y-01	BBS9	ENST00000354265.4,ENST00000242067.6,ENST00000350941.3,ENST00000433714.1,ENST00000425508.2,ENST00000396127.2,ENST00000355070.2	chr7	33169178:33169653:33185853:33185976:33192312:33192448,	33185854	33185976	33185922	33185922	Frame_Shift_Del	T	-	p.F20fs
LIHC	TCGA-DD-A39Y-01	NPSR1	ENST00000381544.2	chr7	34818106:34818177:34851381:34851475:34867012:34867214,34724163:34724296:34851381:34851475:34867012:34867214,	34851382	34851475	34851419	34851419	Frame_Shift_Del	C	-	p.S141fs
LIHC	TCGA-DD-A39Y-01	DPY19L1	ENST00000310974.4	chr7	34979764:34979939:34981376:34981496:34982226:34982251,	34981377	34981496	34981447	34981447	Frame_Shift_Del	A	-	p.L467fs
LIHC	TCGA-DD-A39Y-01	TBX20	ENST00000408931.3,ENST00000492961.1	chr7	35284560:35284669:35288288:35288453:35289562:35289815,	35288289	35288453	35288416	35288416	Frame_Shift_Del	C	-	p.V140fs
LIHC	TCGA-DD-A39Y-01	SEPT7	ENST00000350320.6,ENST00000425198.1,ENST00000399035.3,ENST00000435235.1,ENST00000399034.2,ENST00000494488.2	chr7	35922093:35922186:35923500:35923597:35925437:35925489,	35923501	35923597	35923555	35923555	Frame_Shift_Del	A	-	p.K246fs
LIHC	TCGA-DD-A39Y-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373623	36373623	Frame_Shift_Del	A	-	p.L332fs
LIHC	TCGA-DD-A39Y-01	KIAA0895	ENST00000436884.1	chr7	36374654:36374787:36396510:36397199:36406524:36406810,36374654:36374787:36396510:36397199:36406312:36406522,36375762:36375906:36396510:36397199:36406524:36406810,36375762:36375906:36396510:36397199:36406719:36406780,	36396511	36397199	36397022	36397022	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A39Y-01	ANLN	ENST00000265748.2,ENST00000396068.2,ENST00000424865.1	chr7	36435874:36436028:36438687:36439002:36445789:36445875,	36438688	36439002	36438716	36438716	Frame_Shift_Del	A	-	p.S67fs
LIHC	TCGA-DD-A39Y-01	ANLN	ENST00000452877.1	chr7	36447342:36447565:36450122:36450313:36455366:36455392,	36450123	36450313	36450252	36450252	Frame_Shift_Del	A	-	p.E409fs
LIHC	TCGA-DD-A39Y-01	ANLN	ENST00000441696.1,ENST00000265748.2,ENST00000396068.2	chr7	36450122:36450313:36450667:36450775:36455366:36455392,	36450668	36450775	36450704	36450704	Frame_Shift_Del	T	-	p.F442fs
LIHC	TCGA-DD-A39Y-01	ANLN	ENST00000396068.2	chr7	36450667:36450775:36455366:36455493:36456688:36456757,36450667:36450775:36455366:36455493:36458852:36459076,	36455367	36455493	36455469	36455469	Frame_Shift_Del	A	-	p.K500fs
LIHC	TCGA-DD-A39Y-01	ELMO1	ENST00000448602.1,ENST00000310758.4,ENST00000442504.1,ENST00000396045.3,ENST00000341056.3,ENST00000396040.2	chr7	36917614:36917722:36927164:36927277:36934458:36934613,	36927165	36927277	36927202	36927202	Frame_Shift_Del	C	-	p.G559fs
LIHC	TCGA-DD-A39Y-01	SFRP4	ENST00000436072.2,ENST00000447200.2	chr7	37951720:37951919:37953814:37953880:37953974:37954055,	37953815	37953880	37953847	37953847	Frame_Shift_Del	A	-	p.L187fs
LIHC	TCGA-DD-A39Y-01	AMPH	ENST00000428293.2,ENST00000356264.2,ENST00000325590.5	chr7	38500882:38501011:38502574:38502713:38505066:38505149,	38502575	38502713	38502655	38502655	Frame_Shift_Del	G	-	p.L270fs
LIHC	TCGA-DD-A39Y-01	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027733	40027733	Frame_Shift_Del	A	-	p.K583fs
LIHC	TCGA-DD-A39Y-01	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027789	40027789	Frame_Shift_Del	T	-	p.A601fs
LIHC	TCGA-DD-A39Y-01	GLI3	ENST00000395925.3,ENST00000448703.1	chr7	42116350:42116456:42187824:42188067:42262728:42262894,	42187825	42188067	42187991	42187991	Frame_Shift_Del	C	-	p.G67fs
LIHC	TCGA-DD-A39Y-01	COA1	ENST00000415076.2,ENST00000415798.1,ENST00000310564.6,ENST00000395879.1,ENST00000223336.6,ENST00000438444.1,ENST00000446564.1,ENST00000446330.2,ENST00000431651.1,ENST00000395880.3	chr7	43684849:43684998:43687133:43687233:43688198:43688251,	43687134	43687233	43687163	43687163	Frame_Shift_Del	C	-	p.G29fs
LIHC	TCGA-DD-A39Y-01	BLVRA	ENST00000265523.4,ENST00000402924.1	chr7	43832313:43832411:43840063:43840171:43843274:43843434,	43840064	43840171	43840134	43840134	Frame_Shift_Del	G	-	p.V141fs
LIHC	TCGA-DD-A39Y-01	DBNL	ENST00000423561.2,ENST00000494774.1,ENST00000452943.1,ENST00000468694.1,ENST00000456905.1,ENST00000464762.1	chr7	44084328:44084419:44089823:44089879:44096355:44096502,44084328:44084419:44089823:44089879:44092465:44092540,44084328:44084419:44089823:44089879:44091428:44091541,	44089824	44089879	44089876	44089876	Frame_Shift_Del	G	-	p.G46fs
LIHC	TCGA-DD-A39Y-01	DBNL	ENST00000423561.2,ENST00000448521.1,ENST00000494774.1,ENST00000468694.1,ENST00000456905.1,ENST00000464762.1,ENST00000498733.1	chr7	44084328:44084419:44091428:44091541:44092465:44092540,44089842:44089879:44091428:44091541:44096355:44096502,44089842:44089879:44091428:44091541:44092465:44092540,	44091429	44091541	44091524	44091524	Frame_Shift_Del	T	-	p.F79fs
LIHC	TCGA-DD-A39Y-01	AEBP1	ENST00000223357.3	chr7	44147037:44147109:44147227:44147299:44147407:44147530,	44147228	44147299	44147282	44147282	Frame_Shift_Del	G	-	p.R241fs
LIHC	TCGA-DD-A39Y-01	AEBP1	ENST00000223357.3	chr7	44147227:44147299:44147407:44147530:44147605:44147683,	44147408	44147530	44147443	44147443	Frame_Shift_Del	C	-	p.P260fs
LIHC	TCGA-DD-A39Y-01	POLD2	ENST00000406581.2,ENST00000452185.1,ENST00000436844.1,ENST00000223361.3	chr7	44156028:44156109:44156415:44156614:44156731:44156846,	44156416	44156614	44156475	44156475	Frame_Shift_Del	C	-	p.V241fs
LIHC	TCGA-DD-A39Y-01	POLD2	ENST00000406581.2,ENST00000433715.1,ENST00000452185.1,ENST00000223361.3	chr7	44156535:44156614:44156731:44156846:44161432:44161504,44156535:44156614:44156731:44156846:44157217:44157341,	44156732	44156846	44156763	44156763	Frame_Shift_Del	G	-	p.Q184fs
LIHC	TCGA-DD-A39Y-01	POLD2	ENST00000463464.1,ENST00000456038.1,ENST00000406581.2,ENST00000433715.1,ENST00000452185.1,ENST00000418438.1,ENST00000461116.1,ENST00000470867.1,ENST00000223361.3	chr7	44157239:44157341:44157541:44157663:44161432:44161504,	44157542	44157663	44157566	44157566	Frame_Shift_Del	G	-	p.S106fs
LIHC	TCGA-DD-A39Y-01	CAMK2B	ENST00000497584.1,ENST00000466584.1,ENST00000457475.1,ENST00000353625.4,ENST00000353185.3,ENST00000395749.2,ENST00000440254.2,ENST00000258682.6,ENST00000350811.3,ENST00000358707.3,ENST00000425809.1,ENST00000489429.1,ENST00000346990.4,ENST00000395747.2	chr7	44259660:44259893:44260214:44260309:44260424:44260500,	44260215	44260309	44260246	44260246	Frame_Shift_Del	C	-	p.G579fs
LIHC	TCGA-DD-A39Y-01	CAMK2B	ENST00000497584.1,ENST00000457475.1,ENST00000353185.3,ENST00000395749.2,ENST00000440254.2,ENST00000258682.6,ENST00000523845.1,ENST00000350811.3,ENST00000433930.1,ENST00000502837.2,ENST00000395747.2	chr7	44270604:44270653:44273988:44274060:44274237:44274275,44272420:44272465:44273988:44274060:44274237:44274275,	44273989	44274060	44274038	44274038	Frame_Shift_Del	T	-	p.N361fs
LIHC	TCGA-DD-A39Y-01	TMED4	ENST00000457408.2	chr7	44617492:44619227:44620691:44620838:44621047:44621155,	44620692	44620838	44620776	44620776	Frame_Shift_Del	T	-	p.K150fs
LIHC	TCGA-DD-A39Y-01	OGDH	ENST00000222673.5,ENST00000443864.2	chr7	44687255:44687358:44706334:44706450:44713385:44713540,	44706335	44706450	44706428	44706428	Frame_Shift_Del	G	-	p.R204fs
LIHC	TCGA-DD-A39Y-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000439616.2,ENST00000543843.1,ENST00000447398.1,ENST00000449767.1	chr7	44721318:44721447:44733423:44733603:44734022:44734175,	44733424	44733603	44733461	44733461	Frame_Shift_Del	C	-	p.S458fs
LIHC	TCGA-DD-A39Y-01	ZMIZ2	ENST00000309315.4,ENST00000433667.1,ENST00000413916.1,ENST00000441627.1,ENST00000265346.7	chr7	44796976:44797160:44797446:44797707:44798879:44799059,	44797447	44797707	44797495	44797495	Frame_Shift_Del	C	-	p.P201fs
LIHC	TCGA-DD-A39Y-01	ZMIZ2	ENST00000309315.4,ENST00000478045.1,ENST00000433667.1,ENST00000413916.1,ENST00000441627.1,ENST00000463056.1,ENST00000265346.7	chr7	44804933:44805178:44805762:44805932:44806019:44806153,	44805763	44805932	44805855	44805855	Frame_Shift_Del	C	-	p.P780fs
LIHC	TCGA-DD-A39Y-01	MYO1G	ENST00000488554.1,ENST00000495831.1,ENST00000258787.7,ENST00000483585.1	chr7	45007482:45007557:45009011:45009082:45009303:45009474,	45009012	45009082	45009019	45009019	Frame_Shift_Del	C	-	p.D523fs
LIHC	TCGA-DD-A39Y-01	MYO1G	ENST00000463516.1	chr7	45007482:45007557:45008518:45009082:45009303:45009474,	45008519	45009082	45009019	45009019	Frame_Shift_Del	C	-	p.D523fs
LIHC	TCGA-DD-A39Y-01	MYO1G	ENST00000258787.7,ENST00000464434.1,ENST00000480503.1,ENST00000483585.1	chr7	45016162:45016256:45016461:45016670:45018465:45018599,	45016462	45016670	45016613	45016613	Frame_Shift_Del	G	-	p.P51fs
LIHC	TCGA-DD-A39Y-01	IGFBP3	ENST00000428530.1,ENST00000417621.1,ENST00000381086.5,ENST00000275521.6,ENST00000381083.4	chr7	45954403:45954544:45956146:45956266:45956811:45956996,	45956147	45956266	45956161	45956161	Frame_Shift_Del	A	-	p.Y246fs
LIHC	TCGA-DD-A39Y-01	ABCA13	ENST00000484268.1,ENST00000435803.1	chr7	48407390:48407505:48411764:48412094:48413943:48414013,	48411765	48412094	48411972	48411972	Frame_Shift_Del	T	-	p.F3672fs
LIHC	TCGA-DD-A39Y-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
LIHC	TCGA-DD-A39Y-01	COBL	ENST00000265136.7,ENST00000445054.1	chr7	51111079:51111389:51152862:51153001:51203854:51204028,	51152863	51153001	51152914	51152914	Frame_Shift_Del	G	-	p.L374fs
LIHC	TCGA-DD-A39Y-01	CCT6A	ENST00000540286.1,ENST00000335503.3,ENST00000275603.4	chr7	56123316:56123490:56124003:56124107:56125685:56125796,	56124004	56124107	56124031	56124031	Frame_Shift_Del	A	-	p.K181fs
LIHC	TCGA-DD-A39Y-01	ASL	ENST00000395332.3,ENST00000304874.9,ENST00000380839.4	chr7	65554077:65554162:65554262:65554322:65554598:65554682,	65554263	65554322	65554296	65554296	Frame_Shift_Del	C	-	p.P318fs
LIHC	TCGA-DD-A39Y-01	SBDS	ENST00000414306.1,ENST00000246868.2	chr7	66452730:66453486:66456123:66456288:66458203:66458404,	66456124	66456288	66456262	66456262	Frame_Shift_Del	T	-	p.K162fs
LIHC	TCGA-DD-A39Y-01	SBDS	ENST00000414306.1,ENST00000490953.1	chr7	66458203:66458404:66459206:66459328:66460276:66460377,	66459207	66459328	66459281	66459281	Frame_Shift_Del	T	-	p.N59fs
LIHC	TCGA-DD-A39Y-01	AUTS2	ENST00000406775.2,ENST00000342771.4,ENST00000498384.1	chr7	70242088:70242160:70246600:70246742:70249927:70250005,	70246601	70246742	70246643	70246643	Frame_Shift_Del	A	-	p.K683fs
LIHC	TCGA-DD-A39Y-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72396799:72397015:72397339:72397501:72398922:72399003,	72397340	72397501	72397489	72397489	Frame_Shift_Del	A	-	p.E72fs
LIHC	TCGA-DD-A39Y-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72880625:72880731:72883846:72883980:72884674:72884813,	72883847	72883980	72883935	72883935	Frame_Shift_Del	T	-	p.K926fs
LIHC	TCGA-DD-A39Y-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72891325	72891325	Frame_Shift_Del	T	-	p.K822fs
LIHC	TCGA-DD-A39Y-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892145	72892145	Frame_Shift_Del	T	-	p.K550fs
LIHC	TCGA-DD-A39Y-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892193	72892193	Frame_Shift_Del	T	-	p.K533fs
LIHC	TCGA-DD-A39Y-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72903523:72903721:72907129:72907251:72912826:72913028,	72907130	72907251	72907202	72907202	Frame_Shift_Del	T	-	p.K207fs
LIHC	TCGA-DD-A39Y-01	LIMK1	ENST00000435201.1	chr7	73520406:73520573:73521400:73521523:73522200:73522287,	73521401	73521523	73521482	73521482	Frame_Shift_Del	G	-	p.G372fs
LIHC	TCGA-DD-A39Y-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000483414.1	chr7	73520406:73520573:73521339:73521523:73522200:73522287,	73521340	73521523	73521482	73521482	Frame_Shift_Del	G	-	p.G372fs
LIHC	TCGA-DD-A39Y-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000435201.1	chr7	73526262:73526328:73530131:73530288:73534912:73534968,	73530132	73530288	73530248	73530248	Frame_Shift_Del	G	-	p.V540fs
LIHC	TCGA-DD-A39Y-01	RFC2	ENST00000352131.3,ENST00000055077.3	chr7	73646433:73646546:73649861:73649975:73651691:73651772,	73649862	73649975	73649916	73649916	Frame_Shift_Del	A	-	p.F300fs
LIHC	TCGA-DD-A39Y-01	RFC2	ENST00000480432.1	chr7	73657475:73657576:73660991:73661093:73663341:73663438,73657475:73657576:73660991:73661093:73664068:73664110,	73660992	73661093	73661045	73661045	Frame_Shift_Del	T	-	p.K127fs
LIHC	TCGA-DD-A39Y-01	GTF2IRD2B	ENST00000398546.3,ENST00000430511.2,ENST00000423666.1,ENST00000312575.7,ENST00000356115.5	chr7	74528190:74528329:74536691:74536811:74538936:74538990,	74536692	74536811	74536795	74536795	Frame_Shift_Del	T	-	p.Y114fs
LIHC	TCGA-DD-A39Y-01	POR	ENST00000454934.1,ENST00000496888.1,ENST00000450476.1,ENST00000545601.1,ENST00000419840.1,ENST00000461988.1,ENST00000439269.1,ENST00000447222.1,ENST00000394893.1	chr7	75614094:75614276:75614375:75614525:75614896:75615031,	75614376	75614525	75614451	75614451	Frame_Shift_Del	C	-	p.P443fs
LIHC	TCGA-DD-A39Y-01	STYXL1	ENST00000248600.1,ENST00000359697.3,ENST00000360591.3,ENST00000438695.1,ENST00000340062.5,ENST00000431581.1	chr7	75625816:75625917:75630207:75630320:75633075:75633173,	75630208	75630320	75630253	75630253	Frame_Shift_Del	G	-	p.A256fs
LIHC	TCGA-DD-A39Y-01	DTX2	ENST00000468546.1,ENST00000446820.2,ENST00000413936.2,ENST00000446600.1,ENST00000324432.5,ENST00000479915.1,ENST00000307569.8,ENST00000430490.2	chr7	76131614:76131773:76132742:76132904:76133672:76133762,	76132743	76132904	76132803	76132803	Frame_Shift_Del	C	-	p.P484fs
LIHC	TCGA-DD-A39Y-01	PTPN12	ENST00000460731.1	chr7	77166870:77166962:77200394:77200503:77210743:77210782,	77200395	77200503	77200473	77200473	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A39Y-01	PTPN12	ENST00000248594.6,ENST00000435495.2,ENST00000522115.2,ENST00000415482.2	chr7	77229980:77230123:77236551:77236618:77240081:77240119,	77236552	77236618	77236603	77236603	Frame_Shift_Del	T	-	p.N249fs
LIHC	TCGA-DD-A39Y-01	RSBN1L	ENST00000468035.1,ENST00000445512.1,ENST00000334955.8,ENST00000445288.1	chr7	77394811:77394949:77397977:77398120:77402463:77402631,	77397978	77398120	77397991	77397991	Frame_Shift_Del	G	-	p.W499fs
LIHC	TCGA-DD-A39Y-01	RSBN1L	ENST00000468035.1,ENST00000445512.1,ENST00000334955.8,ENST00000445288.1	chr7	77394811:77394949:77397977:77398120:77402463:77402631,	77397978	77398120	77398072	77398072	Frame_Shift_Del	A	-	p.Q526fs
LIHC	TCGA-DD-A39Y-01	PHTF2	ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2	chr7	77558469:77558644:77567026:77567155:77569346:77569619,	77567027	77567155	77567067	77567067	Frame_Shift_Del	A	-	p.E426fs
LIHC	TCGA-DD-A39Y-01	PHTF2	ENST00000307305.8,ENST00000422959.2,ENST00000248550.7,ENST00000416283.2	chr7	77569515:77569619:77572016:77572103:77578994:77579150,77569844:77569976:77572016:77572103:77578994:77579150,	77572017	77572103	77572086	77572086	Frame_Shift_Del	T	-	p.F614fs
LIHC	TCGA-DD-A39Y-01	MAGI2	ENST00000354212.4,ENST00000519748.1,ENST00000522391.1,ENST00000419488.1	chr7	77755010:77755154:77756513:77756733:77762205:77762377,	77756514	77756733	77756533	77756533	Frame_Shift_Del	G	-	p.S1135fs
LIHC	TCGA-DD-A39Y-01	CD36	ENST00000419819.2,ENST00000394788.3,ENST00000432207.1,ENST00000435819.1,ENST00000433696.2,ENST00000413265.1,ENST00000538969.1,ENST00000438020.1,ENST00000447544.2,ENST00000309881.7,ENST00000426978.1,ENST00000544133.1	chr7	80276024:80276176:80285855:80286016:80290378:80290526,	80285856	80286016	80285889	80285889	Frame_Shift_Del	A	-	p.K52fs
LIHC	TCGA-DD-A39Y-01	CD36	ENST00000419819.2,ENST00000394788.3,ENST00000432207.1,ENST00000435819.1,ENST00000433696.2,ENST00000447544.2,ENST00000309881.7,ENST00000534394.1,ENST00000544133.1	chr7	80290445:80290526:80292305:80292485:80293721:80293813,	80292306	80292485	80292432	80292432	Frame_Shift_Del	T	-	p.F186fs
LIHC	TCGA-DD-A39Y-01	SEMA3C	ENST00000265361.3,ENST00000544525.1,ENST00000419255.2	chr7	80380584:80380652:80387646:80387804:80390931:80390973,	80387647	80387804	80387771	80387771	Frame_Shift_Del	A	-	p.S507fs
LIHC	TCGA-DD-A39Y-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82476462:82476563:82508652:82508778:82523712:82523770,82476462:82476563:82508652:82508778:82531966:82532057,	82508653	82508778	82508685	82508685	Frame_Shift_Del	C	-	p.G4541fs
LIHC	TCGA-DD-A39Y-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579856	82579856	Frame_Shift_Del	A	-	p.W3350fs
LIHC	TCGA-DD-A39Y-01	SEMA3A	ENST00000436949.1,ENST00000265362.4	chr7	83689780:83689874:83739785:83739905:83758438:83758501,	83739786	83739905	83739833	83739833	Frame_Shift_Del	C	-	p.A136fs
LIHC	TCGA-DD-A39Y-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415784	86415784	Frame_Shift_Del	G	-	p.G226fs
LIHC	TCGA-DD-A39Y-01	KIAA1324L	ENST00000490995.1,ENST00000474609.1,ENST00000394714.2,ENST00000297222.6,ENST00000450689.2,ENST00000423294.1,ENST00000416314.1	chr7	86542341:86542520:86544038:86544176:86547757:86547860,	86544039	86544176	86544120	86544120	Frame_Shift_Del	T	-	p.K550fs
LIHC	TCGA-DD-A39Y-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817444	86817444	Frame_Shift_Del	A	-	p.Q147fs
LIHC	TCGA-DD-A39Y-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817444	86817444	Frame_Shift_Del	A	-	p.Q147fs
LIHC	TCGA-DD-A39Y-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000359206.3	chr7	87038551:87038708:87041208:87041349:87042932:87043033,	87041209	87041349	87041282	87041282	Frame_Shift_Del	A	-	p.S951fs
LIHC	TCGA-DD-A39Y-01	ABCB1	ENST00000488737.2,ENST00000543898.1,ENST00000265724.3,ENST00000496821.1	chr7	87144546:87144744:87145824:87145981:87148641:87148782,	87145825	87145981	87145866	87145866	Frame_Shift_Del	T	-	p.T1015fs
LIHC	TCGA-DD-A39Y-01	RUNDC3B	ENST00000394654.3,ENST00000312373.8,ENST00000338056.3,ENST00000489461.1,ENST00000493037.1,ENST00000466676.1	chr7	87329736:87329870:87339885:87339971:87369106:87369196,	87339886	87339971	87339917	87339917	Frame_Shift_Del	A	-	p.E152fs
LIHC	TCGA-DD-A39Y-01	STEAP1	ENST00000297205.2,ENST00000475789.1	chr7	89789071:89789186:89790118:89790631:89791227:89791392,	89790119	89790631	89790542	89790542	Frame_Shift_Del	T	-	p.F171fs
LIHC	TCGA-DD-A39Y-01	CDK14	ENST00000406263.1,ENST00000380050.3,ENST00000436577.2,ENST00000265741.3	chr7	90546915:90547039:90585011:90585132:90613462:90613556,	90585012	90585132	90585068	90585068	Frame_Shift_Del	T	-	p.L249fs
LIHC	TCGA-DD-A39Y-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603248	91603248	Frame_Shift_Del	A	-	p.E103fs
LIHC	TCGA-DD-A39Y-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91660825:91660918:91667732:91668086:91669987:91670212,	91667733	91668086	91667987	91667987	Frame_Shift_Del	A	-	p.S1543fs
LIHC	TCGA-DD-A39Y-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91691587:91691800:91694544:91694777:91695740:91695860,	91694545	91694777	91694769	91694769	Frame_Shift_Del	T	-	p.F2080fs
LIHC	TCGA-DD-A39Y-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708684	91708684	Frame_Shift_Del	A	-	p.K2425fs
LIHC	TCGA-DD-A39Y-01	LRRD1	ENST00000430130.2,ENST00000458448.1	chr7	91774197:91774388:91775396:91775514:91779847:91780009,	91775397	91775514	91775438	91775438	Frame_Shift_Del	T	-	p.K785fs
LIHC	TCGA-DD-A39Y-01	KRIT1	ENST00000394503.2	chr7	91863762:91863906:91864121:91864237:91864716:91864960,91863762:91863906:91864121:91864237:91864847:91864929,91855839:91855996:91864121:91864237:91864716:91864960,	91864122	91864237	91864180	91864180	Frame_Shift_Del	T	-	p.I263fs
LIHC	TCGA-DD-A39Y-01	ANKIB1	ENST00000422095.1,ENST00000265742.3	chr7	92015822:92015957:92017111:92017198:92017288:92017355,	92017112	92017198	92017118	92017118	Frame_Shift_Del	A	-	p.K588fs
LIHC	TCGA-DD-A39Y-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92138642:92138725:92140257:92140361:92140893:92141017,	92140258	92140361	92140297	92140297	Frame_Shift_Del	A	-	p.F516fs
LIHC	TCGA-DD-A39Y-01	CDK6	ENST00000265734.4,ENST00000424848.2	chr7	92300739:92300849:92354939:92355107:92404009:92404145,	92354940	92355107	92355034	92355034	Frame_Shift_Del	G	-	p.P148fs
LIHC	TCGA-DD-A39Y-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000341723.4	chr7	92826797:92826923:92837892:92838189:92844713:92844998,	92837893	92838189	92838074	92838074	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A39Y-01	COL1A2	ENST00000297268.6	chr7	94029507:94029600:94030878:94030932:94033867:94033912,	94030879	94030932	94030918	94030918	Frame_Shift_Del	G	-	p.G89fs
LIHC	TCGA-DD-A39Y-01	COL1A2	ENST00000297268.6	chr7	94037158:94037203:94037494:94037548:94037647:94037692,	94037495	94037548	94037535	94037535	Frame_Shift_Del	C	-	p.A227fs
LIHC	TCGA-DD-A39Y-01	COL1A2	ENST00000297268.6	chr7	94039553:94039607:94039731:94039839:94040200:94040254,	94039732	94039839	94039779	94039779	Frame_Shift_Del	A	-	p.G379fs
LIHC	TCGA-DD-A39Y-01	CASD1	ENST00000297273.4	chr7	94174856:94175013:94176407:94176487:94178844:94178946,	94176408	94176487	94176449	94176449	Frame_Shift_Del	T	-	p.F559fs
LIHC	TCGA-DD-A39Y-01	SGCE	ENST00000428696.2	chr7	94214781:94214827:94217089:94217124:94218000:94218044,	94217090	94217124	94217112	94217112	Frame_Shift_Del	A	-	p.L428fs
LIHC	TCGA-DD-A39Y-01	SLC25A13	ENST00000416240.2,ENST00000265631.5	chr7	95838149:95838289:95864113:95864229:95906507:95906650,	95864114	95864229	95864166	95864166	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A39Y-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97822844	97822844	Frame_Shift_Del	C	-	p.P1024fs
LIHC	TCGA-DD-A39Y-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000479975.1,ENST00000476659.1,ENST00000490842.1	chr7	97852973:97853030:97854112:97854192:97854317:97854414,	97854113	97854192	97854139	97854139	Frame_Shift_Del	C	-	p.G888fs
LIHC	TCGA-DD-A39Y-01	TECPR1	ENST00000542604.1	chr7	97870162:97870263:97870381:97870583:97872778:97872904,	97870382	97870583	97870521	97870521	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A39Y-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000463648.1	chr7	97870162:97870263:97870381:97870556:97872778:97872886,	97870382	97870556	97870521	97870521	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A39Y-01	BAIAP2L1	ENST00000005260.8,ENST00000462558.1	chr7	97944771:97944924:97946530:97946668:97949369:97949441,	97946531	97946668	97946630	97946630	Frame_Shift_Del	T	-	p.K129fs
LIHC	TCGA-DD-A39Y-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98639740:98639855:98643320:98643424:98645306:98645505,	98643321	98643424	98643377	98643377	Frame_Shift_Del	T	-	p.K426fs
LIHC	TCGA-DD-A39Y-01	ARPC1A	ENST00000262942.5,ENST00000432786.1,ENST00000432884.2,ENST00000441989.2	chr7	98941915:98942138:98946474:98946582:98951531:98951569,	98946475	98946582	98946494	98946494	Frame_Shift_Del	A	-	p.K92fs
LIHC	TCGA-DD-A39Y-01	CYP3A7	ENST00000336374.2,ENST00000477357.1	chr7	99311091:99311158:99312177:99312305:99313380:99313529,	99312178	99312305	99312205	99312205	Frame_Shift_Del	T	-	p.K257fs
LIHC	TCGA-DD-A39Y-01	CYP3A43	ENST00000434806.1	chr7	99447601:99447722:99453213:99453341:99454455:99454522,	99453214	99453341	99453316	99453316	Frame_Shift_Del	A	-	p.E258fs
LIHC	TCGA-DD-A39Y-01	CYP3A43	ENST00000415413.1,ENST00000481362.1,ENST00000417625.1,ENST00000434806.1,ENST00000354829.2,ENST00000491648.1	chr7	99459235:99459462:99461159:99461322:99463528:99463624,	99461160	99461322	99461276	99461276	Frame_Shift_Del	T	-	p.I457fs
LIHC	TCGA-DD-A39Y-01	CYP3A43	ENST00000222382.5	chr7	99459235:99459462:99461156:99461322:99463528:99463624,	99461157	99461322	99461276	99461276	Frame_Shift_Del	T	-	p.I457fs
LIHC	TCGA-DD-A39Y-01	TRIM4	ENST00000355947.2,ENST00000354241.5,ENST00000447480.1,ENST00000349062.2	chr7	99501198:99501221:99506204:99506435:99507187:99507221,	99506205	99506435	99506289	99506289	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-DD-A39Y-01	AP4M1	ENST00000463195.1,ENST00000359593.4,ENST00000394061.3,ENST00000429084.1,ENST00000422582.1,ENST00000421755.1,ENST00000416938.1,ENST00000446007.1,ENST00000478501.1	chr7	99700297:99700404:99700486:99700583:99701031:99701068,	99700487	99700583	99700529	99700529	Frame_Shift_Del	G	-	p.E106fs
LIHC	TCGA-DD-A39Y-01	AP4M1	ENST00000450807.1,ENST00000359593.4,ENST00000445295.1,ENST00000438383.1,ENST00000429084.1,ENST00000422582.1,ENST00000421755.1,ENST00000416938.1,ENST00000445208.1	chr7	99703581:99703626:99703863:99703914:99704025:99704137,	99703864	99703914	99703891	99703891	Frame_Shift_Del	C	-	p.L341fs
LIHC	TCGA-DD-A39Y-01	TAF6	ENST00000453269.2,ENST00000421980.1,ENST00000418432.2,ENST00000472509.1,ENST00000344095.4,ENST00000452041.1,ENST00000437822.2	chr7	99704790:99705246:99705548:99705746:99705989:99706163,	99705549	99705746	99705562	99705562	Frame_Shift_Del	G	-	p.P548fs
LIHC	TCGA-DD-A39Y-01	TAF6	ENST00000453269.2,ENST00000421980.1,ENST00000418432.2,ENST00000472509.1,ENST00000344095.4,ENST00000452041.1,ENST00000437822.2	chr7	99707570:99707696:99707822:99707897:99708761:99708944,	99707823	99707897	99707857	99707857	Frame_Shift_Del	C	-	p.G375fs
LIHC	TCGA-DD-A39Y-01	GPC2	ENST00000480087.1,ENST00000471050.1,ENST00000292377.2,ENST00000490629.1	chr7	99769812:99769840:99771457:99771620:99772307:99772347,	99771458	99771620	99771554	99771554	Frame_Shift_Del	C	-	p.V266fs
LIHC	TCGA-DD-A39Y-01	GPC2	ENST00000480087.1	chr7	99771457:99771620:99772307:99772388:99773829:99773988,	99772308	99772388	99772364	99772364	Frame_Shift_Del	G	-	p.R225fs
LIHC	TCGA-DD-A39Y-01	STAG3	ENST00000426455.1,ENST00000317296.5,ENST00000496157.1	chr7	99780345:99780462:99783822:99783919:99786075:99786152,	99783823	99783919	99783892	99783892	Frame_Shift_Del	T	-	p.F137fs
LIHC	TCGA-DD-A39Y-01	ZCWPW1	ENST00000398027.2	chr7	99998716:99998959:100000138:100000199:100001316:100001408,99999511:99999664:100000138:100000199:100001316:100001408,	100000139	100000199	100000151	100000151	Frame_Shift_Del	T	-	p.T487fs
LIHC	TCGA-DD-A39Y-01	ZCWPW1	ENST00000472716.1	chr7	100016768:100016812:100017252:100017436:100018244:100018301,	100017253	100017436	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
LIHC	TCGA-DD-A39Y-01	ZCWPW1	ENST00000464510.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100016768:100016812:100017252:100017506:100018244:100018301,	100017253	100017506	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
LIHC	TCGA-DD-A39Y-01	TSC22D4	ENST00000393991.1	chr7	100071896:100072063:100074899:100075082:100076416:100076792,	100074900	100075082	100075075	100075075	Frame_Shift_Del	G	-	p.P196fs
LIHC	TCGA-DD-A39Y-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075075	100075075	Frame_Shift_Del	G	-	p.P196fs
LIHC	TCGA-DD-A39Y-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075651	100075651	Frame_Shift_Del	C	-	p.G4fs
LIHC	TCGA-DD-A39Y-01	LRCH4	ENST00000485071.1,ENST00000497245.1,ENST00000467201.1,ENST00000310300.6	chr7	100174895:100175012:100175119:100175181:100175286:100175363,	100175120	100175181	100175145	100175145	Frame_Shift_Del	C	-	p.D385fs
LIHC	TCGA-DD-A39Y-01	FBXO24	ENST00000241071.6,ENST00000468962.1,ENST00000488079.1,ENST00000427939.2	chr7	100192005:100192164:100192724:100192846:100193197:100193244,	100192725	100192846	100192801	100192801	Frame_Shift_Del	C	-	p.D343fs
LIHC	TCGA-DD-A39Y-01	ACTL6B	ENST00000487125.1,ENST00000160382.5	chr7	100240764:100240949:100243871:100243958:100244173:100244269,	100243872	100243958	100243891	100243891	Frame_Shift_Del	C	-	p.G394fs
LIHC	TCGA-DD-A39Y-01	EPHB4	ENST00000492878.1,ENST00000487222.1,ENST00000477446.1,ENST00000358173.3,ENST00000360620.3	chr7	100416172:100416266:100417178:100417511:100417762:100417918,	100417179	100417511	100417210	100417210	Frame_Shift_Del	A	-	p.F422fs
LIHC	TCGA-DD-A39Y-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459519	100459519	Frame_Shift_Del	C	-	p.T566fs
LIHC	TCGA-DD-A39Y-01	TRIP6	ENST00000417475.1,ENST00000437505.1,ENST00000200457.4,ENST00000476870.1	chr7	100465742:100465855:100466116:100466488:100467991:100468085,	100466117	100466488	100466126	100466126	Frame_Shift_Del	C	-	p.P129fs
LIHC	TCGA-DD-A39Y-01	ACHE	ENST00000442452.1	chr7	100488789:100488959:100489954:100490264:100490785:100491525,	100489955	100490264	100490040	100490040	Frame_Shift_Del	G	-	p.L490fs
LIHC	TCGA-DD-A39Y-01	ACHE	ENST00000419336.2	chr7	100488789:100488959:100489954:100490175:100490785:100491525,	100489955	100490175	100490040	100490040	Frame_Shift_Del	G	-	p.L490fs
LIHC	TCGA-DD-A39Y-01	ACHE	ENST00000412389.1,ENST00000241069.5,ENST00000411582.1,ENST00000428317.1,ENST00000302913.4	chr7	100488789:100488959:100489954:100490439:100490785:100491525,	100489955	100490439	100490040	100490040	Frame_Shift_Del	G	-	p.L490fs
LIHC	TCGA-DD-A39Y-01	MUC17	ENST00000379439.3,ENST00000306151.4	chr7	100695083:100695243:100696266:100696428:100696619:100696717,	100696267	100696428	100696348	100696348	Frame_Shift_Del	G	-	p.V4395fs
LIHC	TCGA-DD-A39Y-01	MOGAT3	ENST00000440203.2,ENST00000223114.4	chr7	100839177:100839381:100841471:100841646:100841906:100842111,100839467:100839670:100841471:100841646:100841906:100842111,	100841472	100841646	100841562	100841562	Frame_Shift_Del	C	-	p.G193fs
LIHC	TCGA-DD-A39Y-01	PLOD3	ENST00000223127.3	chr7	100850059:100850185:100850858:100851005:100852133:100852238,	100850859	100851005	100850940	100850940	Frame_Shift_Del	C	-	p.G618fs
LIHC	TCGA-DD-A39Y-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000425244.2	chr7	101559394:101559505:101671377:101671425:101713618:101713697,	101671378	101671425	101671418	101671418	Frame_Shift_Del	A	-	p.Q72fs
LIHC	TCGA-DD-A39Y-01	CUX1	ENST00000560541.1,ENST00000546411.2,ENST00000547394.2,ENST00000437600.4,ENST00000292538.4,ENST00000558469.1,ENST00000497815.1,ENST00000549414.2,ENST00000558836.1,ENST00000606749.1,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7,ENST00000393824.3	chr7	101713618:101713697:101740643:101740781:101747615:101747739,	101740644	101740781	101740758	101740758	Frame_Shift_Del	A	-	p.E139fs
LIHC	TCGA-DD-A39Y-01	PRKRIP1	ENST00000397912.3,ENST00000496391.1,ENST00000354783.4	chr7	102016665:102016769:102038066:102038145:102039994:102040095,102036881:102036984:102038066:102038145:102039994:102040095,	102038067	102038145	102038125	102038125	Frame_Shift_Del	A	-	p.E62fs
LIHC	TCGA-DD-A39Y-01	PRKRIP1	ENST00000397912.3,ENST00000496391.1,ENST00000354783.4	chr7	102016665:102016769:102038066:102038145:102039994:102040095,102036881:102036984:102038066:102038145:102039994:102040095,	102038067	102038145	102038127	102038127	Frame_Shift_Del	T	-	p.F63fs
LIHC	TCGA-DD-A39Y-01	FBXL13	ENST00000379308.3,ENST00000455112.2	chr7	102453721:102453978:102462486:102462650:102495223:102495307,	102462487	102462650	102462595	102462595	Frame_Shift_Del	A	-	p.L609fs
LIHC	TCGA-DD-A39Y-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000440067.1,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102667895:102668005:102669046:102669195:102669797:102669865,	102669047	102669195	102669143	102669143	Frame_Shift_Del	T	-	p.M41fs
LIHC	TCGA-DD-A39Y-01	ARMC10	ENST00000428183.2,ENST00000454559.1	chr7	102724128:102724277:102727076:102727211:102732923:102733100,102724128:102724277:102727076:102727211:102737723:102737795,	102727077	102727211	102727115	102727115	Frame_Shift_Del	A	-	p.A144fs
LIHC	TCGA-DD-A39Y-01	ARMC10	ENST00000431642.1,ENST00000425331.1	chr7	102727085:102727211:102732923:102733100:102737723:102737795,102727085:102727211:102732923:102733100:102738745:102738884,	102732924	102733100	102733085	102733085	Frame_Shift_Del	A	-	p.G230fs
LIHC	TCGA-DD-A39Y-01	DNAJC2	ENST00000475065.1,ENST00000249270.7,ENST00000454277.1,ENST00000379263.3,ENST00000379257.3	chr7	102964044:102964110:102964928:102965009:102966989:102967131,	102964929	102965009	102964939	102964939	Frame_Shift_Del	A	-	p.Y215fs
LIHC	TCGA-DD-A39Y-01	DNAJC2	ENST00000249270.7,ENST00000454277.1,ENST00000464253.1,ENST00000379263.3	chr7	102964928:102965009:102966989:102967131:102968102:102968201,	102966990	102967131	102967038	102967038	Frame_Shift_Del	T	-	p.K175fs
LIHC	TCGA-DD-A39Y-01	PSMC2	ENST00000544811.1,ENST00000435765.1,ENST00000292644.3	chr7	103004589:103004754:103006522:103006610:103007859:103008062,	103006523	103006610	103006564	103006564	Frame_Shift_Del	A	-	p.T266fs
LIHC	TCGA-DD-A39Y-01	KMT2E	ENST00000334914.7,ENST00000474203.1,ENST00000495267.1,ENST00000257745.4,ENST00000334884.5,ENST00000482560.2,ENST00000476671.1,ENST00000334877.4,ENST00000311117.3	chr7	104681321:104681470:104702610:104702725:104703797:104703824,	104702611	104702725	104702713	104702713	Frame_Shift_Del	T	-	p.G58fs
LIHC	TCGA-DD-A39Y-01	KMT2E	ENST00000334914.7,ENST00000257745.4,ENST00000334884.5,ENST00000334877.4,ENST00000311117.3	chr7	104742332:104742641:104745885:104746140:104746305:104746402,	104745886	104746140	104745930	104745930	Frame_Shift_Del	A	-	p.G747fs
LIHC	TCGA-DD-A39Y-01	SYPL1	ENST00000455385.2,ENST00000011473.2	chr7	105732144:105732385:105733394:105733583:105738135:105738224,	105733395	105733583	105733552	105733552	Frame_Shift_Del	A	-	p.L145fs
LIHC	TCGA-DD-A39Y-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106508725	106508725	Frame_Shift_Del	C	-	p.T240fs
LIHC	TCGA-DD-A39Y-01	PIK3CG	ENST00000496166.1,ENST00000473541.1,ENST00000440650.2,ENST00000359195.3	chr7	106512981:106513047:106513157:106513383:106515144:106515248,	106513158	106513383	106513176	106513176	Frame_Shift_Del	T	-	p.F694fs
LIHC	TCGA-DD-A39Y-01	PIK3CG	ENST00000496166.1,ENST00000473541.1,ENST00000440650.2,ENST00000359195.3	chr7	106512981:106513047:106513157:106513383:106515144:106515248,	106513158	106513383	106513324	106513324	Frame_Shift_Del	A	-	p.Q743fs
LIHC	TCGA-DD-A39Y-01	BCAP29	ENST00000445771.2,ENST00000442065.1,ENST00000466094.1,ENST00000482371.1,ENST00000486326.1	chr7	107220716:107220746:107221203:107221309:107224326:107224427,	107221204	107221309	107221273	107221273	Frame_Shift_Del	T	-	p.I19fs
LIHC	TCGA-DD-A39Y-01	BCAP29	ENST00000479917.1	chr7	107220716:107220746:107221090:107221309:107224326:107224427,	107221091	107221309	107221273	107221273	Frame_Shift_Del	T	-	p.I19fs
LIHC	TCGA-DD-A39Y-01	BCAP29	ENST00000379119.2,ENST00000445771.2	chr7	107253777:107253877:107254098:107254177:107258772:107259060,	107254099	107254177	107254126	107254126	Frame_Shift_Del	A	-	p.K240fs
LIHC	TCGA-DD-A39Y-01	SLC26A4	ENST00000265715.3	chr7	107303740:107303880:107312582:107312693:107314608:107314793,	107312583	107312693	107312638	107312638	Frame_Shift_Del	T	-	p.A120fs
LIHC	TCGA-DD-A39Y-01	SLC26A4	ENST00000265715.3	chr7	107315389:107315554:107323646:107323799:107323899:107323982,	107323647	107323799	107323741	107323741	Frame_Shift_Del	A	-	p.E287fs
LIHC	TCGA-DD-A39Y-01	SLC26A4	ENST00000265715.3	chr7	107323899:107323982:107329497:107329645:107330568:107330682,	107329498	107329645	107329556	107329556	Frame_Shift_Del	T	-	p.F354fs
LIHC	TCGA-DD-A39Y-01	SLC26A4	ENST00000265715.3,ENST00000480841.1,ENST00000543100.1,ENST00000541474.1,ENST00000544569.1	chr7	107340530:107340620:107341545:107341641:107342271:107342502,	107341546	107341641	107341614	107341614	Frame_Shift_Del	A	-	p.I592fs
LIHC	TCGA-DD-A39Y-01	SLC26A4	ENST00000265715.3,ENST00000543100.1,ENST00000541474.1,ENST00000544569.1	chr7	107342271:107342502:107344775:107344830:107350498:107350644,	107344776	107344830	107344782	107344782	Frame_Shift_Del	A	-	p.K681fs
LIHC	TCGA-DD-A39Y-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564717	107564717	Frame_Shift_Del	T	-	p.T1752fs
LIHC	TCGA-DD-A39Y-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107571801:107571945:107572618:107572822:107575859:107576101,	107572619	107572822	107572682	107572682	Frame_Shift_Del	T	-	p.K1467fs
LIHC	TCGA-DD-A39Y-01	LAMB1	ENST00000474380.1	chr7	107571801:107571945:107572618:107572938:107575859:107576101,	107572619	107572938	107572682	107572682	Frame_Shift_Del	T	-	p.K1467fs
LIHC	TCGA-DD-A39Y-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107577537:107577722:107580433:107580803:107591670:107591767,	107580434	107580803	107580681	107580681	Frame_Shift_Del	C	-	p.V1196fs
LIHC	TCGA-DD-A39Y-01	LAMB1	ENST00000476039.1,ENST00000393561.1,ENST00000222399.6	chr7	107591670:107591767:107592453:107592668:107593974:107594094,	107592454	107592668	107592647	107592647	Frame_Shift_Del	C	-	p.G1058fs
LIHC	TCGA-DD-A39Y-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107592453:107592668:107593974:107594199:107595911:107596075,	107593975	107594199	107594141	107594141	Frame_Shift_Del	C	-	p.G995fs
LIHC	TCGA-DD-A39Y-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107626466:107626530:107626619:107626808:107635331:107635405,	107626620	107626808	107626680	107626680	Frame_Shift_Del	T	-	p.K208fs
LIHC	TCGA-DD-A39Y-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107635331:107635405:107638801:107638937:107642002:107642178,	107638802	107638937	107638926	107638926	Frame_Shift_Del	T	-	p.K99fs
LIHC	TCGA-DD-A39Y-01	LAMB4	ENST00000205386.4,ENST00000388781.3,ENST00000388780.3,ENST00000422975.1	chr7	107692541:107692702:107696076:107696452:107698276:107698373,	107696077	107696452	107696213	107696213	Frame_Shift_Del	T	-	p.R1207fs
LIHC	TCGA-DD-A39Y-01	NRCAM	ENST00000351718.4,ENST00000465585.1,ENST00000413765.2	chr7	107800805:107800937:107816874:107817051:107818434:107818557,	107816875	107817051	107817027	107817027	Frame_Shift_Del	G	-	p.P1000fs
LIHC	TCGA-DD-A39Y-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155275	108155275	Frame_Shift_Del	T	-	p.M221fs
LIHC	TCGA-DD-A39Y-01	PNPLA8	ENST00000453144.1	chr7	108154587:108154737:108154879:108155891:108161919:108161965,108154725:108154737:108154879:108155891:108166472:108166564,	108154880	108155891	108155275	108155275	Frame_Shift_Del	T	-	p.M221fs
LIHC	TCGA-DD-A39Y-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155681	108155681	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-DD-A39Y-01	PNPLA8	ENST00000453144.1	chr7	108154587:108154737:108154879:108155891:108161919:108161965,108154725:108154737:108154879:108155891:108166472:108166564,	108154880	108155891	108155681	108155681	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-DD-A39Y-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000476846.1,ENST00000437633.1,ENST00000468571.1	chr7	111638502:111638558:111640548:111640589:111644102:111644186,	111640549	111640589	111640562	111640562	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-DD-A39Y-01	ZNF277	ENST00000450657.1	chr7	111846755:111846862:111926927:111927129:111935923:111936012,	111926928	111927129	111926967	111926967	Frame_Shift_Del	A	-	p.E44fs
LIHC	TCGA-DD-A39Y-01	ZNF277	ENST00000361946.4	chr7	111846755:111846862:111926931:111927129:111935923:111936012,	111926932	111927129	111926967	111926967	Frame_Shift_Del	A	-	p.E44fs
LIHC	TCGA-DD-A39Y-01	ZNF277	ENST00000457808.1,ENST00000361946.4,ENST00000361822.3,ENST00000450657.1	chr7	111936283:111936366:111958236:111958328:111967771:111967882,	111958237	111958328	111958281	111958281	Frame_Shift_Del	T	-	p.N170fs
LIHC	TCGA-DD-A39Y-01	IFRD1	ENST00000403825.3,ENST00000005558.4,ENST00000535603.1,ENST00000466459.1	chr7	112097050:112097093:112098915:112099073:112101920:112101971,	112098916	112099073	112099005	112099005	Frame_Shift_Del	A	-	p.K167fs
LIHC	TCGA-DD-A39Y-01	IFRD1	ENST00000403825.3,ENST00000005558.4,ENST00000535603.1,ENST00000466459.1	chr7	112097050:112097093:112098915:112099073:112101920:112101971,	112098916	112099073	112099029	112099029	Frame_Shift_Del	A	-	p.K175fs
LIHC	TCGA-DD-A39Y-01	TMEM168	ENST00000418785.1	chr7	112407229:112407799:112412835:112412873:112415230:112415373,	112412836	112412873	112412870	112412870	Frame_Shift_Del	C	-	p.G504fs
LIHC	TCGA-DD-A39Y-01	TMEM168	ENST00000447395.1,ENST00000312814.6,ENST00000454074.1	chr7	112407229:112407799:112412835:112413110:112415230:112415373,	112412836	112413110	112412870	112412870	Frame_Shift_Del	C	-	p.G504fs
LIHC	TCGA-DD-A39Y-01	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619677	114619677	Frame_Shift_Del	G	-	p.G221fs
LIHC	TCGA-DD-A39Y-01	MET	ENST00000397752.3,ENST00000436117.2,ENST00000318493.6	chr7	116380905:116381079:116395408:116395569:116397490:116397593,	116395409	116395569	116395452	116395452	Frame_Shift_Del	C	-	p.T582fs
LIHC	TCGA-DD-A39Y-01	MET	ENST00000397752.3,ENST00000422097.1	chr7	116398570:116398674:116399444:116399544:116403103:116403134,	116399445	116399544	116399473	116399473	Frame_Shift_Del	A	-	p.K765fs
LIHC	TCGA-DD-A39Y-01	MET	ENST00000318493.6	chr7	116398570:116398674:116399390:116399544:116403103:116403134,	116399391	116399544	116399473	116399473	Frame_Shift_Del	A	-	p.K765fs
LIHC	TCGA-DD-A39Y-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117250572:117250723:117251634:117251862:117254666:117254767,	117251635	117251862	117251812	117251812	Frame_Shift_Del	T	-	p.I1106fs
LIHC	TCGA-DD-A39Y-01	CTTNBP2	ENST00000446636.1,ENST00000160373.3,ENST00000441556.1	chr7	117417564:117417819:117420494:117420645:117422915:117423015,	117420495	117420645	117420559	117420559	Frame_Shift_Del	T	-	p.N820fs
LIHC	TCGA-DD-A39Y-01	CPED1	ENST00000310396.5	chr7	120907268:120907356:120911337:120911484:120935493:120935652,	120911338	120911484	120911457	120911457	Frame_Shift_Del	G	-	p.Q947fs
LIHC	TCGA-DD-A39Y-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000462699.1,ENST00000334010.7,ENST00000449022.2	chr7	121960090:121960392:121965530:121965635:121985627:121985735,	121965531	121965635	121965563	121965563	Frame_Shift_Del	A	-	p.Y1227fs
LIHC	TCGA-DD-A39Y-01	CADPS2	ENST00000412584.2,ENST00000313070.7,ENST00000334010.7,ENST00000449022.2	chr7	122255234:122255353:122261534:122261771:122269301:122269382,	122261535	122261771	122261566	122261566	Frame_Shift_Del	T	-	p.K358fs
LIHC	TCGA-DD-A39Y-01	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000434450.1,ENST00000324698.6	chr7	123109267:123109438:123119848:123120024:123136749:123136960,	123119849	123120024	123119856	123119856	Frame_Shift_Del	A	-	p.L468fs
LIHC	TCGA-DD-A39Y-01	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000469057.1,ENST00000434450.1,ENST00000324698.6	chr7	123136749:123136960:123142650:123142806:123142997:123143170,	123142651	123142806	123142787	123142787	Frame_Shift_Del	T	-	p.N296fs
LIHC	TCGA-DD-A39Y-01	POT1	ENST00000608057.1,ENST00000357628.3,ENST00000609106.1,ENST00000607932.1	chr7	124499031:124499166:124503403:124503694:124532319:124532434,124499031:124499166:124503403:124503694:124510964:124511095,	124503404	124503694	124503494	124503494	Frame_Shift_Del	T	-	p.K152fs
LIHC	TCGA-DD-A39Y-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173278	126173278	Frame_Shift_Del	G	-	p.H720fs
LIHC	TCGA-DD-A39Y-01	SND1	ENST00000354725.3	chr7	127569240:127569382:127630999:127631109:127714553:127714674,	127631000	127631109	127631078	127631078	Frame_Shift_Del	T	-	p.L583fs
LIHC	TCGA-DD-A39Y-01	SND1	ENST00000354725.3	chr7	127725762:127725832:127726989:127727103:127729540:127729744,	127726990	127727103	127727095	127727095	Frame_Shift_Del	C	-	p.P804fs
LIHC	TCGA-DD-A39Y-01	SND1	ENST00000489417.1,ENST00000354725.3	chr7	127726989:127727103:127729540:127729744:127731888:127731933,	127729541	127729744	127729612	127729612	Frame_Shift_Del	G	-	p.V830fs
LIHC	TCGA-DD-A39Y-01	RBM28	ENST00000223073.2,ENST00000415472.2,ENST00000481788.1	chr7	127950532:127950984:127953227:127953327:127954816:127955024,	127953228	127953327	127953286	127953286	Frame_Shift_Del	T	-	p.K696fs
LIHC	TCGA-DD-A39Y-01	IMPDH1	ENST00000480861.1	chr7	128040386:128040593:128040885:128040945:128041068:128041170,	128040886	128040945	128040905	128040905	Frame_Shift_Del	G	-	p.P182fs
LIHC	TCGA-DD-A39Y-01	IMPDH1	ENST00000348127.6,ENST00000378717.4,ENST00000338791.6,ENST00000497868.1,ENST00000419067.2,ENST00000354269.5	chr7	128040386:128040593:128040870:128040945:128041068:128041170,	128040871	128040945	128040905	128040905	Frame_Shift_Del	G	-	p.P182fs
LIHC	TCGA-DD-A39Y-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138133	128138133	Frame_Shift_Del	G	-	p.G221fs
LIHC	TCGA-DD-A39Y-01	FAM71F2	ENST00000474069.1,ENST00000434001.2,ENST00000378704.3,ENST00000480462.1	chr7	128315701:128315913:128317617:128317867:128320084:128320203,	128317618	128317867	128317624	128317624	Frame_Shift_Del	C	-	p.L124fs
LIHC	TCGA-DD-A39Y-01	CALU	ENST00000542996.2,ENST00000449187.2	chr7	128394319:128394509:128394582:128394776:128398924:128399091,128388626:128388858:128394582:128394776:128398924:128399091,	128394583	128394776	128394631	128394631	Frame_Shift_Del	G	-	p.E98fs
LIHC	TCGA-DD-A39Y-01	CCDC136	ENST00000464672.1,ENST00000494552.1,ENST00000297788.4	chr7	128446428:128446449:128446741:128446912:128447413:128447599,	128446742	128446912	128446803	128446803	Frame_Shift_Del	A	-	p.E437fs
LIHC	TCGA-DD-A39Y-01	CCDC136	ENST00000297788.4	chr7	128454702:128454973:128455667:128455985:128457811:128457918,	128455668	128455985	128455784	128455784	Frame_Shift_Del	A	-	p.A1054fs
LIHC	TCGA-DD-A39Y-01	FLNC	ENST00000388853.3,ENST00000325888.8,ENST00000346177.6	chr7	128482284:128482428:128482628:128482752:128482847:128482912,	128482629	128482752	128482676	128482676	Frame_Shift_Del	C	-	p.G771fs
LIHC	TCGA-DD-A39Y-01	TNPO3	ENST00000482320.1,ENST00000471166.1,ENST00000393245.1,ENST00000265388.5,ENST00000471234.1	chr7	128633860:128633968:128637442:128637589:128640482:128640621,	128637443	128637589	128637503	128637503	Frame_Shift_Del	T	-	p.K366fs
LIHC	TCGA-DD-A39Y-01	TNPO3	ENST00000482320.1	chr7	128657036:128657110:128658010:128658211:128694704:128694937,128657036:128657110:128658010:128658211:128681610:128681771,	128658011	128658211	128658070	128658070	Frame_Shift_Del	C	-	p.D88fs
LIHC	TCGA-DD-A39Y-01	TSPAN33	ENST00000289407.4	chr7	128801519:128801577:128802234:128802362:128802673:128802748,	128802235	128802362	128802287	128802287	Frame_Shift_Del	G	-	p.V71fs
LIHC	TCGA-DD-A39Y-01	NRF1	ENST00000223190.4,ENST00000393231.3,ENST00000454688.1,ENST00000393230.2,ENST00000353868.4,ENST00000311967.2,ENST00000393232.1	chr7	129297190:129297414:129311268:129311383:129317471:129317598,	129311269	129311383	129311334	129311334	Frame_Shift_Del	T	-	p.F97fs
LIHC	TCGA-DD-A39Y-01	KLHDC10	ENST00000335420.5,ENST00000468226.1	chr7	129756284:129756506:129760588:129760743:129761893:129762042,	129760589	129760743	129760712	129760712	Frame_Shift_Del	G	-	p.R200fs
LIHC	TCGA-DD-A39Y-01	KLHDC10	ENST00000335420.5	chr7	129767243:129767291:129769276:129769416:129770376:129775560,	129769277	129769416	129769282	129769282	Frame_Shift_Del	T	-	p.F329fs
LIHC	TCGA-DD-A39Y-01	CPA5	ENST00000495736.1	chr7	130003281:130003350:130007212:130007831:130008250:130008438,	130007213	130007831	130007805	130007805	Frame_Shift_Del	T	-	p.I366fs
LIHC	TCGA-DD-A39Y-01	CPA5	ENST00000485477.1,ENST00000393213.3,ENST00000461828.1,ENST00000474905.1,ENST00000466363.2,ENST00000355388.3	chr7	130007212:130007412:130007746:130007831:130008250:130008438,	130007747	130007831	130007805	130007805	Frame_Shift_Del	T	-	p.I366fs
LIHC	TCGA-DD-A39Y-01	CHCHD3	ENST00000542753.1,ENST00000448878.1,ENST00000466644.1,ENST00000481152.1,ENST00000262570.5	chr7	132659928:132660046:132709305:132709387:132754901:132754989,	132709306	132709387	132709364	132709364	Frame_Shift_Del	T	-	p.R65fs
LIHC	TCGA-DD-A39Y-01	CALD1	ENST00000361675.2	chr7	134617944:134618141:134620438:134620516:134625842:134625988,134618651:134618828:134620438:134620516:134625842:134625988,	134620439	134620516	134620469	134620469	Frame_Shift_Del	A	-	p.K218fs
LIHC	TCGA-DD-A39Y-01	CALD1	ENST00000361675.2	chr7	134617944:134618141:134620438:134620516:134625842:134625988,134618651:134618828:134620438:134620516:134625842:134625988,	134620439	134620516	134620476	134620476	Frame_Shift_Del	A	-	p.E220fs
LIHC	TCGA-DD-A39Y-01	AGBL3	ENST00000359383.3,ENST00000476700.1	chr7	134674000:134674061:134678243:134678429:134701802:134701910,134674000:134674061:134678243:134678429:134694792:134695016,	134678244	134678429	134678412	134678412	Frame_Shift_Del	A	-	p.E72fs
LIHC	TCGA-DD-A39Y-01	AGBL3	ENST00000436302.2	chr7	134766470:134766542:134800131:134800363:134819592:134820521,	134800132	134800363	134800216	134800216	Frame_Shift_Del	A	-	p.E787fs
LIHC	TCGA-DD-A39Y-01	CNOT4	ENST00000361528.4,ENST00000315544.5,ENST00000428680.2,ENST00000356162.4,ENST00000451834.1,ENST00000423368.2	chr7	135107062:135107102:135122905:135123171:135194636:135194686,	135122906	135123171	135122931	135122931	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-DD-A39Y-01	SLC13A4	ENST00000471405.1,ENST00000354042.4	chr7	135365988:135366448:135368871:135369009:135370269:135370431,	135368872	135369009	135368985	135368985	Frame_Shift_Del	G	-	p.L544fs
LIHC	TCGA-DD-A39Y-01	CREB3L2	ENST00000330387.6	chr7	137559724:137565297:137567157:137567374:137569740:137569867,	137567158	137567374	137567253	137567253	Frame_Shift_Del	C	-	p.G464fs
LIHC	TCGA-DD-A39Y-01	CREB3L2	ENST00000330387.6	chr7	137559724:137565297:137567157:137567374:137569740:137569867,	137567158	137567374	137567290	137567290	Frame_Shift_Del	C	-	p.G452fs
LIHC	TCGA-DD-A39Y-01	TRIM24	ENST00000343526.4,ENST00000464210.1,ENST00000497516.1,ENST00000415680.2	chr7	138199956:138200104:138203933:138204066:138209985:138210059,	138203934	138204066	138203981	138203981	Frame_Shift_Del	A	-	p.K228fs
LIHC	TCGA-DD-A39Y-01	TRIM24	ENST00000343526.4,ENST00000497516.1,ENST00000415680.2	chr7	138209985:138210102:138213860:138213975:138223401:138223548,	138213861	138213975	138213878	138213878	Frame_Shift_Del	A	-	p.Q300fs
LIHC	TCGA-DD-A39Y-01	TRIM24	ENST00000343526.4,ENST00000497516.1,ENST00000415680.2	chr7	138209985:138210102:138213860:138213975:138223401:138223548,	138213861	138213975	138213943	138213943	Frame_Shift_Del	A	-	p.K323fs
LIHC	TCGA-DD-A39Y-01	TRIM24	ENST00000343526.4	chr7	138235807:138235925:138239442:138239711:138252225:138252399,	138239443	138239711	138239447	138239447	Frame_Shift_Del	T	-	p.S422fs
LIHC	TCGA-DD-A39Y-01	TRIM24	ENST00000497516.1,ENST00000415680.2	chr7	138235807:138235925:138239442:138239609:138252225:138252399,	138239443	138239609	138239447	138239447	Frame_Shift_Del	T	-	p.S422fs
LIHC	TCGA-DD-A39Y-01	SVOPL	ENST00000478865.1,ENST00000419765.3,ENST00000288513.5,ENST00000421622.1,ENST00000436657.1	chr7	138281161:138281275:138305790:138305880:138310713:138310795,	138305791	138305880	138305872	138305872	Frame_Shift_Del	G	-	p.P304fs
LIHC	TCGA-DD-A39Y-01	SVOPL	ENST00000419765.3	chr7	138347818:138347890:138356763:138356862:138363178:138363270,	138356764	138356862	138356800	138356800	Frame_Shift_Del	C	-	p.W79fs
LIHC	TCGA-DD-A39Y-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603221	138603221	Frame_Shift_Del	G	-	p.P384fs
LIHC	TCGA-DD-A39Y-01	HIPK2	ENST00000428878.2,ENST00000406875.3	chr7	139259873:139260034:139268562:139268810:139281462:139281744,	139268563	139268810	139268635	139268635	Frame_Shift_Del	G	-	p.R965fs
LIHC	TCGA-DD-A39Y-01	TBXAS1	ENST00000438104.1,ENST00000336425.5,ENST00000263552.6	chr7	139487136:139487225:139529110:139529278:139572033:139572127,	139529111	139529278	139529223	139529223	Frame_Shift_Del	A	-	p.N13fs
LIHC	TCGA-DD-A39Y-01	DENND2A	ENST00000537639.1,ENST00000496613.1,ENST00000275884.6,ENST00000469373.1,ENST00000492720.1,ENST00000461883.1	chr7	140244417:140244566:140246598:140246739:140255435:140255513,	140246599	140246739	140246718	140246718	Frame_Shift_Del	T	-	p.R688fs
LIHC	TCGA-DD-A39Y-01	DENND2A	ENST00000537639.1,ENST00000496613.1,ENST00000475837.1,ENST00000275884.6,ENST00000492720.1,ENST00000461883.1	chr7	140273607:140273808:140285388:140285510:140287452:140287580,	140285389	140285510	140285453	140285453	Frame_Shift_Del	C	-	p.G394fs
LIHC	TCGA-DD-A39Y-01	ADCK2	ENST00000072869.4,ENST00000476491.1,ENST00000498423.1,ENST00000483369.1	chr7	140374410:140374557:140378954:140379083:140380841:140380937,	140378955	140379083	140379029	140379029	Frame_Shift_Del	C	-	p.F385fs
LIHC	TCGA-DD-A39Y-01	MRPS33	ENST00000324787.5	chr7	140705968:140706335:140710218:140710460:140714151:140714229,140705968:140706335:140710218:140710460:140714710:140714749,	140710219	140710460	140710377	140710377	Frame_Shift_Del	A	-	p.F19fs
LIHC	TCGA-DD-A39Y-01	MRPS33	ENST00000467334.1	chr7	140705968:140706335:140710218:140710417:140714710:140714749,	140710219	140710417	140710377	140710377	Frame_Shift_Del	A	-	p.F19fs
LIHC	TCGA-DD-A39Y-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141799412:141799537:141800601:141800690:141802429:141802479,	141800602	141800690	141800654	141800654	Frame_Shift_Del	G	-	p.G2644fs
LIHC	TCGA-DD-A39Y-01	KEL	ENST00000355265.2	chr7	142640362:142640430:142640572:142640683:142640869:142640926,	142640573	142640683	142640597	142640597	Frame_Shift_Del	G	-	p.P560fs
LIHC	TCGA-DD-A39Y-01	CASP2	ENST00000310447.5,ENST00000481483.1,ENST00000493642.1	chr7	142989392:142989560:142989709:142989791:142991322:142991417,	142989710	142989791	142989765	142989765	Frame_Shift_Del	T	-	p.L150fs
LIHC	TCGA-DD-A39Y-01	ZYX	ENST00000322764.5,ENST00000449423.2,ENST00000354434.4,ENST00000392910.2	chr7	143080092:143080415:143085311:143085432:143085581:143085593,	143085312	143085432	143085328	143085328	Frame_Shift_Del	C	-	p.A347fs
LIHC	TCGA-DD-A39Y-01	ZYX	ENST00000322764.5,ENST00000449423.2,ENST00000354434.4,ENST00000392910.2	chr7	143080092:143080415:143085311:143085432:143085581:143085593,	143085312	143085432	143085333	143085333	Frame_Shift_Del	G	-	p.G349fs
LIHC	TCGA-DD-A39Y-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098162	144098162	Frame_Shift_Del	T	-	p.K274fs
LIHC	TCGA-DD-A39Y-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098414	144098414	Frame_Shift_Del	C	-	p.G190fs
LIHC	TCGA-DD-A39Y-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098436	144098436	Frame_Shift_Del	C	-	p.E183fs
LIHC	TCGA-DD-A39Y-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148454074:148454242:148456395:148456446:148456639:148456730,	148456396	148456446	148456441	148456441	Frame_Shift_Del	A	-	p.K177fs
LIHC	TCGA-DD-A39Y-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148464710:148464841:148480874:148480982:148481062:148481169,	148480875	148480982	148480914	148480914	Frame_Shift_Del	A	-	p.K376fs
LIHC	TCGA-DD-A39Y-01	ZNF425	ENST00000483014.1,ENST00000378061.2	chr7	148802580:148802658:148809228:148809387:148815313:148815440,	148809229	148809387	148809376	148809376	Frame_Shift_Del	A	-	p.S53fs
LIHC	TCGA-DD-A39Y-01	KRBA1	ENST00000496259.1,ENST00000485033.2,ENST00000255992.10,ENST00000479560.1,ENST00000319551.8,ENST00000466546.1	chr7	149419512:149419644:149419873:149420047:149420824:149420980,	149419874	149420047	149419942	149419942	Frame_Shift_Del	C	-	p.P223fs
LIHC	TCGA-DD-A39Y-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559070	149559070	Frame_Shift_Del	C	-	p.P942fs
LIHC	TCGA-DD-A39Y-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559371	149559371	Frame_Shift_Del	G	-	p.R1041fs
LIHC	TCGA-DD-A39Y-01	TMEM176A	ENST00000004103.3	chr7	150497875:150497916:150498623:150498812:150499302:150499413,	150498624	150498812	150498667	150498667	Frame_Shift_Del	C	-	p.A10fs
LIHC	TCGA-DD-A39Y-01	TMEM176A	ENST00000475007.1,ENST00000475536.1	chr7	150500707:150500920:150501449:150501573:150501914:150502024,	150501450	150501573	150501516	150501516	Frame_Shift_Del	A	-	p.T208fs
LIHC	TCGA-DD-A39Y-01	TMEM176A	ENST00000004103.3,ENST00000461345.1,ENST00000484928.1,ENST00000494349.1	chr7	150500707:150500920:150501449:150501560:150501914:150502024,	150501450	150501560	150501516	150501516	Frame_Shift_Del	A	-	p.T208fs
LIHC	TCGA-DD-A39Y-01	NOS3	ENST00000467517.1,ENST00000297494.3,ENST00000484524.1	chr7	150692290:150692402:150693491:150693640:150693850:150694013,	150693492	150693640	150693569	150693569	Frame_Shift_Del	C	-	p.G116fs
LIHC	TCGA-DD-A39Y-01	ABCB8	ENST00000498578.1	chr7	150739047:150739195:150741057:150741233:150742295:150742496,	150741058	150741233	150741081	150741081	Frame_Shift_Del	G	-	p.G598fs
LIHC	TCGA-DD-A39Y-01	ABCB8	ENST00000482899.1,ENST00000542328.1,ENST00000358849.4,ENST00000482309.1,ENST00000297504.6,ENST00000466514.1,ENST00000356058.4	chr7	150739047:150739195:150741057:150741308:150742295:150742496,	150741058	150741308	150741081	150741081	Frame_Shift_Del	G	-	p.G598fs
LIHC	TCGA-DD-A39Y-01	CDK5	ENST00000297518.4	chr7	150752385:150752460:150752618:150752693:150753666:150753723,	150752619	150752693	150752646	150752646	Frame_Shift_Del	C	-	p.G152fs
LIHC	TCGA-DD-A39Y-01	FASTK	ENST00000460980.1,ENST00000482571.1,ENST00000489884.1,ENST00000297532.6,ENST00000353841.2	chr7	150774077:150774114:150774187:150774323:150774396:150774488,	150774188	150774323	150774230	150774230	Frame_Shift_Del	C	-	p.G462fs
LIHC	TCGA-DD-A39Y-01	FASTK	ENST00000482806.1	chr7	150774077:150774114:150774187:150774488:150774707:150774867,	150774188	150774488	150774230	150774230	Frame_Shift_Del	C	-	p.G462fs
LIHC	TCGA-DD-A39Y-01	FASTK	ENST00000467237.1,ENST00000483953.1	chr7	150773802:150773919:150773999:150774323:150774396:150774488,	150774000	150774323	150774230	150774230	Frame_Shift_Del	C	-	p.G462fs
LIHC	TCGA-DD-A39Y-01	FASTK	ENST00000482806.1,ENST00000482571.1,ENST00000483953.1,ENST00000489884.1,ENST00000297532.6,ENST00000353841.2	chr7	150774396:150774488:150774707:150774867:150774965:150775179,	150774708	150774867	150774755	150774755	Frame_Shift_Del	G	-	p.P384fs
LIHC	TCGA-DD-A39Y-01	FASTK	ENST00000482806.1,ENST00000482571.1,ENST00000483953.1,ENST00000489884.1,ENST00000297532.6,ENST00000353841.2	chr7	150774396:150774488:150774707:150774867:150774965:150775179,	150774708	150774867	150774781	150774781	Frame_Shift_Del	G	-	p.R376fs
LIHC	TCGA-DD-A39Y-01	FASTK	ENST00000482571.1	chr7	150775648:150775788:150776009:150776108:150776586:150777009,	150776010	150776108	150776030	150776030	Frame_Shift_Del	G	-	p.P195fs
LIHC	TCGA-DD-A39Y-01	FASTK	ENST00000482806.1,ENST00000297532.6	chr7	150775648:150775788:150775928:150776108:150777771:150777877,150775648:150775788:150775928:150776108:150776586:150777009,	150775929	150776108	150776030	150776030	Frame_Shift_Del	G	-	p.P195fs
LIHC	TCGA-DD-A39Y-01	AGAP3	ENST00000397238.2	chr7	150831568:150831655:150835229:150835400:150837065:150837203,	150835230	150835400	150835379	150835379	Frame_Shift_Del	C	-	p.P550fs
LIHC	TCGA-DD-A39Y-01	PRKAG2	ENST00000491938.1,ENST00000476632.1,ENST00000488258.1,ENST00000493872.1,ENST00000392801.2,ENST00000418337.2,ENST00000492843.1,ENST00000433631.2,ENST00000287878.4	chr7	151271976:151272035:151273456:151273538:151292430:151292537,	151273457	151273538	151273470	151273470	Frame_Shift_Del	T	-	p.K311fs
LIHC	TCGA-DD-A39Y-01	GALNT11	ENST00000430044.2	chr7	151722835:151722969:151791274:151791607:151797882:151798006,	151791275	151791607	151791468	151791468	Frame_Shift_Del	A	-	p.P52fs
LIHC	TCGA-DD-A39Y-01	KMT2C	ENST00000558084.1,ENST00000360104.3,ENST00000262189.6,ENST00000355193.2,ENST00000424877.1,ENST00000473186.1	chr7	151847984:151848092:151848526:151848666:151849789:151850039,	151848527	151848666	151848557	151848557	Frame_Shift_Del	T	-	p.K4269fs
LIHC	TCGA-DD-A39Y-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151900018:151900149:151902190:151902310:151904384:151904513,	151902191	151902310	151902237	151902237	Frame_Shift_Del	T	-	p.K1305fs
LIHC	TCGA-DD-A39Y-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151949630:151949800:151960100:151960215:151962122:151962294,	151960101	151960215	151960151	151960151	Frame_Shift_Del	A	-	p.C417fs
LIHC	TCGA-DD-A39Y-01	DPP6	ENST00000332007.3,ENST00000377770.3,ENST00000427557.1,ENST00000404039.1	chr7	154680981:154681054:154681166:154681240:154684043:154684248,	154681167	154681240	154681215	154681215	Frame_Shift_Del	G	-	p.R745fs
LIHC	TCGA-DD-A39Y-01	INSIG1	ENST00000340368.4	chr7	155090270:155090407:155094456:155094556:155099950:155100467,155093960:155094127:155094456:155094556:155099950:155100467,	155094457	155094556	155094506	155094506	Frame_Shift_Del	T	-	p.F253fs
LIHC	TCGA-DD-A39Y-01	RBM33	ENST00000392761.3,ENST00000401878.3	chr7	155530753:155531097:155532408:155532720:155534512:155534800,	155532409	155532720	155532607	155532607	Frame_Shift_Del	C	-	p.P648fs
LIHC	TCGA-DD-A39Y-01	RNF32	ENST00000432459.2	chr7	156433572:156433649:156436494:156436586:156437192:156437233,156433464:156433505:156436494:156436586:156437192:156437233,156433477:156433698:156436494:156436586:156437192:156437233,	156436495	156436586	156436577	156436577	Frame_Shift_Del	A	-	p.L2fs
LIHC	TCGA-DD-A39Y-01	LMBR1	ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156476253:156476857:156480723:156480885:156516805:156516872,	156480724	156480885	156480828	156480828	Frame_Shift_Del	A	-	p.F428fs
LIHC	TCGA-DD-A39Y-01	LMBR1	ENST00000461603.1,ENST00000448926.1,ENST00000540390.1,ENST00000359422.4,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156520623:156520701:156521337:156521414:156526870:156526951,	156521338	156521414	156521402	156521402	Frame_Shift_Del	T	-	p.K284fs
LIHC	TCGA-DD-A39Y-01	LMBR1	ENST00000434503.1,ENST00000448926.1,ENST00000540390.1,ENST00000359422.4,ENST00000477983.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156549086:156549159:156554827:156554892:156555801:156555870,	156554828	156554892	156554872	156554872	Frame_Shift_Del	A	-	p.S214fs
LIHC	TCGA-DD-A39Y-01	LMBR1	ENST00000485985.1,ENST00000444719.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1	chr7	156626446:156626486:156629506:156629579:156685621:156685681,	156629507	156629579	156629511	156629511	Frame_Shift_Del	T	-	p.K45fs
LIHC	TCGA-DD-A39Y-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157370712:157370832:157387929:157388007:157396693:157396767,	157387930	157388007	157387984	157387984	Frame_Shift_Del	G	-	p.P785fs
LIHC	TCGA-DD-A39Y-01	NCAPG2	ENST00000541468.1,ENST00000275830.10,ENST00000441982.1	chr7	158439151:158439255:158444984:158445172:158447286:158447386,	158444985	158445172	158445051	158445051	Frame_Shift_Del	T	-	p.K956fs
LIHC	TCGA-DD-A39Y-01	NCAPG2	ENST00000541468.1,ENST00000449727.2,ENST00000409423.1,ENST00000275830.10,ENST00000409339.3,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3,ENST00000432615.1	chr7	158451029:158451100:158454885:158455059:158456875:158456988,	158454886	158455059	158454895	158454895	Frame_Shift_Del	T	-	p.K660fs
LIHC	TCGA-DD-A39Y-01	ESYT2	ENST00000251527.5,ENST00000275418.7	chr7	158534213:158534587:158536219:158536369:158540884:158540971,	158536220	158536369	158536321	158536321	Frame_Shift_Del	G	-	p.L592fs
LIHC	TCGA-DD-A39Y-01	FBXO25	ENST00000382824.1,ENST00000352684.2	chr8	363072:363213:381340:381444:385614:385700,	381341	381444	381419	381419	Frame_Shift_Del	T	-	p.I21fs
LIHC	TCGA-DD-A39Y-01	AGPAT5	ENST00000530716.1,ENST00000523234.1,ENST00000285518.6	chr8	6605204:6605349:6612571:6612695:6614683:6614707,	6612572	6612695	6612625	6612625	Frame_Shift_Del	A	-	p.K268fs
LIHC	TCGA-DD-A39Y-01	SPAG11A	ENST00000434307.2	chr8	7716699:7716807:7717868:7717944:7718167:7718504,7706214:7706365:7717868:7717944:7718167:7718245,	7717869	7717944	7717922	7717922	Frame_Shift_Del	T	-	p.F90fs
LIHC	TCGA-DD-A39Y-01	DLC1	ENST00000276297.4,ENST00000503161.2,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12958197:12958279:12960298:12960362:12968250:12968332,	12960299	12960362	12960302	12960302	Frame_Shift_Del	T	-	p.K521fs
LIHC	TCGA-DD-A39Y-01	TUSC3	ENST00000509380.1,ENST00000507400.1,ENST00000515859.1,ENST00000510836.1,ENST00000506802.1,ENST00000511783.2,ENST00000382020.4,ENST00000503731.1	chr8	15480588:15480758:15508205:15508323:15517015:15517156,	15508206	15508323	15508260	15508260	Frame_Shift_Del	T	-	p.A121fs
LIHC	TCGA-DD-A39Y-01	ZDHHC2	ENST00000262096.8	chr8	17072745:17072858:17074680:17074755:17077764:17082308,	17074681	17074755	17074708	17074708	Frame_Shift_Del	A	-	p.E364fs
LIHC	TCGA-DD-A39Y-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000544260.1,ENST00000521772.1,ENST00000381869.3,ENST00000262102.6,ENST00000518713.1,ENST00000381861.3,ENST00000517413.1	chr8	17512072:17512175:17513371:17513574:17532694:17532761,	17513372	17513574	17513449	17513449	Frame_Shift_Del	A	-	p.Y957fs
LIHC	TCGA-DD-A39Y-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19297387:19297442:19315936:19316153:19362711:19363641,	19315937	19316153	19315974	19315974	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A39Y-01	INTS10	ENST00000522114.1,ENST00000397977.3	chr8	19675785:19675853:19677083:19677187:19677889:19678029,	19677084	19677187	19677178	19677178	Frame_Shift_Del	T	-	p.F98fs
LIHC	TCGA-DD-A39Y-01	FAM160B2	ENST00000289921.7,ENST00000450006.3,ENST00000427751.1	chr8	21953847:21954020:21955026:21955131:21955227:21955350,	21955027	21955131	21955092	21955092	Frame_Shift_Del	C	-	p.H121fs
LIHC	TCGA-DD-A39Y-01	HR	ENST00000312841.8	chr8	21972581:21973275:21973812:21973941:21976462:21976578,	21973813	21973941	21973853	21973853	Frame_Shift_Del	C	-	p.G1156fs
LIHC	TCGA-DD-A39Y-01	SFTPC	ENST00000518615.1,ENST00000318561.3,ENST00000522109.1,ENST00000437090.2,ENST00000521315.1	chr8	22019321:22019383:22020086:22020245:22020592:22020627,	22020087	22020245	22020231	22020231	Frame_Shift_Del	A	-	p.K63fs
LIHC	TCGA-DD-A39Y-01	POLR3D	ENST00000397802.4,ENST00000306433.4,ENST00000517789.1	chr8	22105993:22106162:22106556:22106822:22107587:22107672,	22106557	22106822	22106726	22106726	Frame_Shift_Del	C	-	p.L275fs
LIHC	TCGA-DD-A39Y-01	SLC39A14	ENST00000289952.5,ENST00000359741.5,ENST00000381237.1	chr8	22273585:22273793:22275163:22275348:22277064:22277653,	22275164	22275348	22275223	22275223	Frame_Shift_Del	T	-	p.F403fs
LIHC	TCGA-DD-A39Y-01	PPP3CC	ENST00000289963.8,ENST00000240139.5,ENST00000397775.3,ENST00000518852.1	chr8	22333104:22333137:22355513:22355625:22368598:22368744,	22355514	22355625	22355537	22355537	Frame_Shift_Del	A	-	p.L132fs
LIHC	TCGA-DD-A39Y-01	PDLIM2	ENST00000397761.2,ENST00000397760.4,ENST00000265810.4,ENST00000464275.1,ENST00000308354.7,ENST00000409417.1,ENST00000448520.1	chr8	22447108:22447254:22449063:22449181:22451245:22451801,	22449064	22449181	22449098	22449098	Frame_Shift_Del	C	-	p.S266fs
LIHC	TCGA-DD-A39Y-01	ADAM28	ENST00000397649.3,ENST00000437154.2,ENST00000520448.1,ENST00000265769.4	chr8	24168873:24168950:24170900:24171093:24177748:24177815,	24170901	24171093	24170994	24170994	Frame_Shift_Del	C	-	p.N159fs
LIHC	TCGA-DD-A39Y-01	DOCK5	ENST00000467709.2,ENST00000276440.7,ENST00000481728.2,ENST00000444569.1	chr8	25209246:25209342:25216478:25216577:25220562:25220657,	25216479	25216577	25216557	25216557	Frame_Shift_Del	A	-	p.K977fs
LIHC	TCGA-DD-A39Y-01	PTK2B	ENST00000412793.1,ENST00000420218.2,ENST00000544172.1,ENST00000346049.5,ENST00000338238.4,ENST00000517339.1,ENST00000397501.1	chr8	27278173:27278261:27279820:27279900:27287609:27287672,	27279821	27279900	27279892	27279892	Frame_Shift_Del	G	-	p.L181fs
LIHC	TCGA-DD-A39Y-01	CHRNA2	ENST00000520933.2,ENST00000407991.1,ENST00000240132.2,ENST00000523529.1	chr8	27319119:27319271:27320495:27321510:27324745:27324855,	27320496	27321510	27321440	27321440	Frame_Shift_Del	C	-	p.V174fs
LIHC	TCGA-DD-A39Y-01	SCARA5	ENST00000524352.1,ENST00000354914.3	chr8	27779087:27779762:27823930:27824059:27845020:27845132,	27823931	27824059	27824013	27824013	Frame_Shift_Del	C	-	p.G53fs
LIHC	TCGA-DD-A39Y-01	ELP3	ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000542181.1,ENST00000537665.1,ENST00000523687.1,ENST00000524103.1,ENST00000523357.1,ENST00000519261.1,ENST00000521015.1	chr8	28016114:28016150:28017745:28017973:28019513:28019595,	28017746	28017973	28017825	28017825	Frame_Shift_Del	T	-	p.I446fs
LIHC	TCGA-DD-A39Y-01	KIF13B	ENST00000524189.1	chr8	28970979:28971072:28974347:28974524:28976384:28976509,	28974348	28974524	28974466	28974466	Frame_Shift_Del	C	-	p.G1240fs
LIHC	TCGA-DD-A39Y-01	WRN	ENST00000298139.5,ENST00000521620.1	chr8	31001065:31001139:31004568:31004644:31004879:31004992,	31004569	31004644	31004619	31004619	Frame_Shift_Del	T	-	p.I1145fs
LIHC	TCGA-DD-A39Y-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36788468:36788663:36790437:36790550:36793032:36793643,	36790438	36790550	36790481	36790481	Frame_Shift_Del	T	-	p.L992fs
LIHC	TCGA-DD-A39Y-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730181	37730181	Frame_Shift_Del	T	-	p.K713fs
LIHC	TCGA-DD-A39Y-01	DDHD2	ENST00000520272.2,ENST00000397166.2,ENST00000526237.1	chr8	38095055:38095145:38095606:38095727:38097792:38097882,	38095607	38095727	38095634	38095634	Frame_Shift_Del	G	-	p.G177fs
LIHC	TCGA-DD-A39Y-01	ADAM9	ENST00000487273.2	chr8	38940486:38940592:38947565:38947707:38948777:38948865,	38947566	38947707	38947638	38947638	Frame_Shift_Del	T	-	p.I714fs
LIHC	TCGA-DD-A39Y-01	KAT6A	ENST00000418721.1,ENST00000265713.2,ENST00000406337.1,ENST00000396930.3	chr8	41798359:41798962:41800310:41800518:41801265:41801497,	41800311	41800518	41800351	41800351	Frame_Shift_Del	T	-	p.N799fs
LIHC	TCGA-DD-A39Y-01	POLB	ENST00000522610.1,ENST00000265421.4,ENST00000532157.1,ENST00000518925.1,ENST00000520008.1	chr8	42202477:42202537:42206533:42206608:42207524:42207583,	42206534	42206608	42206573	42206573	Frame_Shift_Del	T	-	p.F76fs
LIHC	TCGA-DD-A39Y-01	HGSNAT	ENST00000458501.2,ENST00000379644.4,ENST00000522082.1	chr8	43028855:43028886:43033216:43033377:43037287:43037403,	43033217	43033377	43033319	43033319	Frame_Shift_Del	T	-	p.S346fs
LIHC	TCGA-DD-A39Y-01	HGSNAT	ENST00000458501.2,ENST00000379644.4,ENST00000519705.1,ENST00000521576.1,ENST00000297798.7	chr8	43052814:43052885:43052982:43053095:43054530:43055001,	43052983	43053095	43053061	43053061	Frame_Shift_Del	G	-	p.K592fs
LIHC	TCGA-DD-A39Y-01	SPIDR	ENST00000521214.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48203641:48203726:48308935:48309186:48352884:48352959,48203641:48203726:48308935:48309186:48320422:48320523,48206455:48206619:48308935:48309186:48320422:48320523,	48308936	48309186	48309013	48309013	Frame_Shift_Del	T	-	p.D201fs
LIHC	TCGA-DD-A39Y-01	SPIDR	ENST00000521214.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48508372:48508568:48511507:48511758:48586362:48586503,	48511508	48511758	48511710	48511710	Frame_Shift_Del	G	-	p.R499fs
LIHC	TCGA-DD-A39Y-01	PRKDC	ENST00000523565.1,ENST00000314191.2,ENST00000521331.1	chr8	48691564:48691654:48694722:48694815:48694938:48695152,	48694723	48694815	48694789	48694789	Frame_Shift_Del	T	-	p.N3807fs
LIHC	TCGA-DD-A39Y-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48766643:48766775:48767782:48767934:48769716:48769860,	48767783	48767934	48767862	48767862	Frame_Shift_Del	T	-	p.R2227fs
LIHC	TCGA-DD-A39Y-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48798504:48798708:48800107:48800266:48801078:48801211,	48800108	48800266	48800117	48800117	Frame_Shift_Del	A	-	p.F1520fs
LIHC	TCGA-DD-A39Y-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48809720:48809854:48811029:48811129:48812932:48813027,	48811030	48811129	48811075	48811075	Frame_Shift_Del	T	-	p.K1141fs
LIHC	TCGA-DD-A39Y-01	PRKDC	ENST00000540819.1,ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48866909:48867006:48868433:48868508:48869730:48869823,	48868434	48868508	48868460	48868460	Frame_Shift_Del	T	-	p.I125fs
LIHC	TCGA-DD-A39Y-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48883070:48883436:48883900:48884028:48885416:48885624,	48883901	48884028	48883979	48883979	Frame_Shift_Del	A	-	p.K628fs
LIHC	TCGA-DD-A39Y-01	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52384746:52384864:52387531:52387701:52396202:52396274,	52387532	52387701	52387649	52387649	Frame_Shift_Del	C	-	p.E193fs
LIHC	TCGA-DD-A39Y-01	PCMTD1	ENST00000522514.1	chr8	52758220:52758323:52773404:52773806:52811489:52811530,	52773405	52773806	52773460	52773460	Frame_Shift_Del	A	-	p.F84fs
LIHC	TCGA-DD-A39Y-01	PCMTD1	ENST00000522514.1	chr8	52758220:52758323:52773404:52773806:52811489:52811530,	52773405	52773806	52773556	52773556	Frame_Shift_Del	T	-	p.K52fs
LIHC	TCGA-DD-A39Y-01	RB1CC1	ENST00000435644.2,ENST00000539297.1,ENST00000025008.5	chr8	53571432:53571536:53573155:53573217:53573485:53573567,	53573156	53573217	53573205	53573205	Frame_Shift_Del	A	-	p.L547fs
LIHC	TCGA-DD-A39Y-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54656146:54656250:54669114:54669216:54708206:54708321,54656186:54656250:54669114:54669216:54682177:54682248,	54669115	54669216	54669195	54669195	Frame_Shift_Del	T	-	p.E381fs
LIHC	TCGA-DD-A39Y-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54682213:54682303:54684548:54684727:54708206:54708321,	54684549	54684727	54684713	54684713	Frame_Shift_Del	T	-	p.K277fs
LIHC	TCGA-DD-A39Y-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54684548:54684727:54708206:54708399:54714358:54714428,	54708207	54708399	54708303	54708303	Frame_Shift_Del	T	-	p.E240fs
LIHC	TCGA-DD-A39Y-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56708536:56708711:56711472:56711779:56715015:56715165,	56711473	56711779	56711477	56711477	Frame_Shift_Del	A	-	p.E516fs
LIHC	TCGA-DD-A39Y-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56708536:56708711:56711472:56711779:56715015:56715165,	56711473	56711779	56711599	56711599	Frame_Shift_Del	A	-	p.K558fs
LIHC	TCGA-DD-A39Y-01	LYN	ENST00000520050.1,ENST00000520220.2,ENST00000519728.1	chr8	56860176:56860282:56863017:56863116:56863239:56863307,	56863018	56863116	56863054	56863054	Frame_Shift_Del	A	-	p.T86fs
LIHC	TCGA-DD-A39Y-01	SDR16C5	ENST00000303749.3,ENST00000522671.1	chr8	57221486:57221586:57224715:57224847:57228573:57228920,	57224716	57224847	57224839	57224839	Frame_Shift_Del	T	-	p.K114fs
LIHC	TCGA-DD-A39Y-01	NSMAF	ENST00000038176.3,ENST00000427130.2	chr8	59512308:59512429:59512528:59512580:59513843:59513907,	59512529	59512580	59512535	59512535	Frame_Shift_Del	A	-	p.F442fs
LIHC	TCGA-DD-A39Y-01	CHD7	ENST00000525508.1,ENST00000423902.2	chr8	61655590:61655656:61693558:61693989:61707544:61707686,	61693559	61693989	61693948	61693948	Frame_Shift_Del	A	-	p.A685fs
LIHC	TCGA-DD-A39Y-01	CHD7	ENST00000525508.1,ENST00000423902.2	chr8	61693558:61693989:61707544:61707686:61712946:61713084,	61707545	61707686	61707633	61707633	Frame_Shift_Del	A	-	p.K729fs
LIHC	TCGA-DD-A39Y-01	CLVS1	ENST00000519846.1,ENST00000325897.4	chr8	62212235:62212841:62289163:62289338:62366699:62366787,	62289164	62289338	62289272	62289272	Frame_Shift_Del	T	-	p.N188fs
LIHC	TCGA-DD-A39Y-01	MTFR1	ENST00000522239.1	chr8	66582107:66582253:66594562:66594686:66605878:66605994,	66594563	66594686	66594636	66594636	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-DD-A39Y-01	MTFR1	ENST00000424808.2,ENST00000262146.4	chr8	66582215:66582253:66594587:66594686:66605878:66605994,	66594588	66594686	66594636	66594636	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-DD-A39Y-01	PDE7A	ENST00000523253.1,ENST00000396642.3,ENST00000379419.4,ENST00000519626.1,ENST00000401827.3	chr8	66659999:66660038:66691954:66692038:66695017:66695078,	66691955	66692038	66691997	66691997	Frame_Shift_Del	T	-	p.R82fs
LIHC	TCGA-DD-A39Y-01	ADHFE1	ENST00000396623.3,ENST00000496501.1,ENST00000449512.1,ENST00000415254.1,ENST00000379385.4,ENST00000276576.7,ENST00000426810.1,ENST00000424777.2	chr8	67356871:67356983:67357452:67357649:67359498:67359576,	67357453	67357649	67357612	67357612	Frame_Shift_Del	A	-	p.G171fs
LIHC	TCGA-DD-A39Y-01	MCMDC2	ENST00000469823.1,ENST00000541540.1,ENST00000492775.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3	chr8	67786761:67786821:67789583:67789779:67790808:67790931,	67789584	67789779	67789732	67789732	Frame_Shift_Del	A	-	p.Q145fs
LIHC	TCGA-DD-A39Y-01	CSPP1	ENST00000521324.1,ENST00000521168.1,ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68089914:68089961:68092097:68092161:68102884:68102994,	68092098	68092161	68092125	68092125	Frame_Shift_Del	A	-	p.K1057fs
LIHC	TCGA-DD-A39Y-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70594418:70594578:70617265:70617464:70650274:70650439,	70617266	70617464	70617333	70617333	Frame_Shift_Del	A	-	p.S519fs
LIHC	TCGA-DD-A39Y-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70594418:70594578:70617265:70617464:70650274:70650439,	70617266	70617464	70617403	70617403	Frame_Shift_Del	T	-	p.K495fs
LIHC	TCGA-DD-A39Y-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70650274:70650439:70667658:70667876:70673977:70674110,	70667659	70667876	70667805	70667805	Frame_Shift_Del	T	-	p.K371fs
LIHC	TCGA-DD-A39Y-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71086990:71087094:71126137:71126310:71128894:71128999,	71126138	71126310	71126145	71126145	Frame_Shift_Del	T	-	p.K84fs
LIHC	TCGA-DD-A39Y-01	TRAM1	ENST00000262213.2,ENST00000521425.1,ENST00000536748.1	chr8	71499340:71499411:71506740:71506825:71508497:71508556,	71506741	71506825	71506818	71506818	Frame_Shift_Del	T	-	p.M79fs
LIHC	TCGA-DD-A39Y-01	EYA1	ENST00000303824.7,ENST00000496494.1,ENST00000465115.1,ENST00000388741.2,ENST00000388740.3,ENST00000388743.2,ENST00000388742.4,ENST00000340726.3	chr8	72129199:72129258:72156837:72156927:72181974:72182058,	72156838	72156927	72156850	72156850	Frame_Shift_Del	A	-	p.F376fs
LIHC	TCGA-DD-A39Y-01	STAU2	ENST00000521727.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521447.1	chr8	74529526:74529686:74585341:74585477:74600888:74601048,	74585342	74585477	74585429	74585429	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A39Y-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75157119	75157119	Frame_Shift_Del	T	-	p.K517fs
LIHC	TCGA-DD-A39Y-01	IL7	ENST00000520215.1	chr8	79648708:79648762:79652236:79652317:79710306:79710443,79648708:79648762:79652236:79652317:79710362:79710443,	79652237	79652317	79652264	79652264	Frame_Shift_Del	A	-	p.F67fs
LIHC	TCGA-DD-A39Y-01	IMPA1	ENST00000449740.2,ENST00000522997.1,ENST00000523942.1,ENST00000256108.5,ENST00000519816.1,ENST00000519964.1,ENST00000311489.4	chr8	82588468:82588514:82591360:82591465:82592884:82593018,	82591361	82591465	82591428	82591428	Frame_Shift_Del	T	-	p.S79fs
LIHC	TCGA-DD-A39Y-01	IMPA1	ENST00000518202.1,ENST00000521360.1,ENST00000519816.1,ENST00000521979.1,ENST00000518188.1,ENST00000311489.4	chr8	82592884:82593018:82593732:82593819:82598486:82598517,	82593733	82593819	82593814	82593814	Frame_Shift_Del	A	-	p.F53fs
LIHC	TCGA-DD-A39Y-01	IMPA1	ENST00000449740.2	chr8	82593732:82593819:82597997:82598198:82598486:82598517,	82597998	82598198	82598090	82598090	Frame_Shift_Del	T	-	p.R21fs
LIHC	TCGA-DD-A39Y-01	LRRCC1	ENST00000523669.1	chr8	86022349:86022415:86025166:86025334:86037026:86037174,	86025167	86025334	86025290	86025290	Frame_Shift_Del	T	-	p.I147fs
LIHC	TCGA-DD-A39Y-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041562	86041562	Frame_Shift_Del	A	-	p.E505fs
LIHC	TCGA-DD-A39Y-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86042153:86042293:86043994:86044196:86047081:86047267,	86043995	86044196	86044017	86044017	Frame_Shift_Del	T	-	p.F578fs
LIHC	TCGA-DD-A39Y-01	MMP16	ENST00000520568.1,ENST00000522726.1,ENST00000544227.1	chr8	89198704:89198827:89209386:89209535:89339303:89339415,	89209387	89209535	89209407	89209407	Frame_Shift_Del	T	-	p.K87fs
LIHC	TCGA-DD-A39Y-01	RIPK2	ENST00000220751.4,ENST00000522965.1,ENST00000540020.1	chr8	90792315:90792388:90796277:90796367:90798820:90798914,	90796278	90796367	90796320	90796320	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-DD-A39Y-01	RIPK2	ENST00000220751.4,ENST00000522965.1,ENST00000540020.1	chr8	90792315:90792388:90796277:90796367:90798820:90798914,	90796278	90796367	90796325	90796325	Frame_Shift_Del	G	-	p.M329fs
LIHC	TCGA-DD-A39Y-01	NBN	ENST00000517772.1,ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90982747:90982785:90983400:90983518:90990447:90990551,	90983401	90983518	90983414	90983414	Frame_Shift_Del	A	-	p.L230fs
LIHC	TCGA-DD-A39Y-01	NBN	ENST00000265433.3,ENST00000409330.1	chr8	90992961:90993121:90993602:90993751:90994180:90994230,90992961:90993121:90993602:90993751:90994949:90995083,	90993603	90993751	90993626	90993626	Frame_Shift_Del	A	-	p.F99fs
LIHC	TCGA-DD-A39Y-01	DECR1	ENST00000517761.1	chr8	91018263:91018505:91029351:91029554:91031136:91031194,91013744:91013789:91029351:91029554:91031136:91031194,91013744:91013789:91029351:91029554:91031043:91031194,91017519:91017597:91029351:91029554:91031136:91031194,91027768:91027894:91029351:91029554:91031136:91031194,	91029352	91029554	91029478	91029478	Frame_Shift_Del	G	-	p.G59fs
LIHC	TCGA-DD-A39Y-01	DECR1	ENST00000517314.1	chr8	91013744:91013789:91029430:91029554:91031136:91031194,	91029431	91029554	91029478	91029478	Frame_Shift_Del	G	-	p.G59fs
LIHC	TCGA-DD-A39Y-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000309536.2,ENST00000522181.1	chr8	92352631:92352779:92355580:92355694:92364037:92364115,	92355581	92355694	92355620	92355620	Frame_Shift_Del	T	-	p.F358fs
LIHC	TCGA-DD-A39Y-01	TMEM67	ENST00000323130.3,ENST00000452276.1,ENST00000453321.3,ENST00000521517.1	chr8	94768005:94768094:94770710:94770804:94776069:94776161,	94770711	94770804	94770773	94770773	Frame_Shift_Del	A	-	p.G125fs
LIHC	TCGA-DD-A39Y-01	DPY19L4	ENST00000523020.1	chr8	95777410:95777542:95777938:95778037:95778839:95778913,95773929:95774062:95777938:95778037:95778839:95778913,	95777939	95778037	95777989	95777989	Frame_Shift_Del	T	-	p.N351fs
LIHC	TCGA-DD-A39Y-01	INTS8	ENST00000519457.1	chr8	95835603:95835789:95837120:95837295:95839490:95839581,95835437:95835529:95837120:95837295:95839490:95839581,95835603:95835789:95837120:95837295:95839949:95840021,	95837121	95837295	95837164	95837164	Frame_Shift_Del	T	-	p.A58fs
LIHC	TCGA-DD-A39Y-01	INTS8	ENST00000523206.1,ENST00000524333.1	chr8	95844219:95844402:95848751:95848859:95850690:95850846,95844219:95844402:95848751:95848859:95850721:95850846,	95848752	95848859	95848830	95848830	Frame_Shift_Del	T	-	p.F279fs
LIHC	TCGA-DD-A39Y-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95853718:95853819:95854574:95854716:95861689:95861760,	95854575	95854716	95854599	95854599	Frame_Shift_Del	T	-	p.C381fs
LIHC	TCGA-DD-A39Y-01	TP53INP1	ENST00000448464.2	chr8	95938199:95942956:95944297:95944335:95952087:95952241,	95944298	95944335	95944325	95944325	Frame_Shift_Del	T	-	p.S162fs
LIHC	TCGA-DD-A39Y-01	LAPTM4B	ENST00000521545.2	chr8	98788076:98788336:98817580:98817692:98827555:98827629,	98817581	98817692	98817618	98817618	Frame_Shift_Del	C	-	p.A137fs
LIHC	TCGA-DD-A39Y-01	RPL30	ENST00000287038.3,ENST00000521726.1,ENST00000521291.1	chr8	99054034:99054078:99054872:99055003:99057170:99057316,	99054873	99055003	99054966	99054966	Frame_Shift_Del	T	-	p.T69fs
LIHC	TCGA-DD-A39Y-01	STK3	ENST00000523601.1,ENST00000419617.2	chr8	99466922:99468228:99538969:99539145:99560196:99560389,	99538970	99539145	99539012	99539012	Frame_Shift_Del	A	-	p.F453fs
LIHC	TCGA-DD-A39Y-01	STK3	ENST00000518165.1,ENST00000424861.2,ENST00000521649.1,ENST00000419617.2	chr8	99779470:99779599:99786966:99787047:99837742:99837874,	99786967	99787047	99786993	99786993	Frame_Shift_Del	A	-	p.F55fs
LIHC	TCGA-DD-A39Y-01	VPS13B	ENST00000355155.1,ENST00000358544.2,ENST00000441350.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100025987:100026163:100050650:100050794:100108539:100108660,	100050651	100050794	100050671	100050671	Frame_Shift_Del	T	-	p.T56fs
LIHC	TCGA-DD-A39Y-01	VPS13B	ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100205103:100205285:100286425:100286560:100287308:100287482,	100286426	100286560	100286538	100286538	Frame_Shift_Del	A	-	p.I876fs
LIHC	TCGA-DD-A39Y-01	COX6C	ENST00000524245.1	chr8	100899759:100899846:100904135:100904280:100905866:100905908,100899717:100899846:100904135:100904280:100905546:100905851,100899717:100899846:100904135:100904280:100905670:100905850,100899717:100899846:100904135:100904280:100905240:100905363,	100904136	100904280	100904233	100904233	Frame_Shift_Del	A	-	p.L6fs
LIHC	TCGA-DD-A39Y-01	COX6C	ENST00000517682.2,ENST00000297564.2	chr8	100899759:100899846:100904135:100904275:100905866:100905908,	100904136	100904275	100904233	100904233	Frame_Shift_Del	A	-	p.L6fs
LIHC	TCGA-DD-A39Y-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100994164:100994344:100999685:100999847:101008689:101008758,	100999686	100999847	100999692	100999692	Frame_Shift_Del	T	-	p.K1058fs
LIHC	TCGA-DD-A39Y-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075899	101075899	Frame_Shift_Del	A	-	p.L366fs
LIHC	TCGA-DD-A39Y-01	POLR2K	ENST00000522439.1	chr8	101162852:101162937:101163574:101163644:101164051:101164144,	101163575	101163644	101163613	101163613	Frame_Shift_Del	A	-	p.P10fs
LIHC	TCGA-DD-A39Y-01	SPAG1	ENST00000520643.1,ENST00000251809.3,ENST00000520508.1,ENST00000388798.2	chr8	101178041:101178201:101190043:101190169:101195602:101195664,	101190044	101190169	101190077	101190077	Frame_Shift_Del	A	-	p.K112fs
LIHC	TCGA-DD-A39Y-01	RNF19A	ENST00000523644.1	chr8	101271391:101271474:101272081:101272225:101273769:101273983,101271391:101271474:101272081:101272225:101276261:101276308,	101272082	101272225	101272111	101272111	Frame_Shift_Del	G	-	p.S599fs
LIHC	TCGA-DD-A39Y-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300230	101300230	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A39Y-01	ANKRD46	ENST00000519597.1,ENST00000358990.3,ENST00000520552.1,ENST00000335659.3,ENST00000520311.1	chr8	101534741:101534999:101540072:101540231:101541750:101542028,	101540073	101540231	101540177	101540177	Frame_Shift_Del	T	-	p.K122fs
LIHC	TCGA-DD-A39Y-01	SNX31	ENST00000520352.1,ENST00000311812.2,ENST00000520661.1	chr8	101629871:101629958:101642554:101642619:101648124:101648239,	101642555	101642619	101642571	101642571	Frame_Shift_Del	A	-	p.L102fs
LIHC	TCGA-DD-A39Y-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721904	101721904	Frame_Shift_Del	G	-	p.P343fs
LIHC	TCGA-DD-A39Y-01	PABPC1	ENST00000519100.1,ENST00000318607.5,ENST00000519622.1,ENST00000519596.1,ENST00000519004.1,ENST00000522387.1	chr8	101724609:101724685:101724879:101725017:101725314:101725409,	101724880	101725017	101724979	101724979	Frame_Shift_Del	T	-	p.K259fs
LIHC	TCGA-DD-A39Y-01	PABPC1	ENST00000519100.1	chr8	101725369:101725409:101727698:101727829:101730000:101730116,	101727699	101727829	101727739	101727739	Frame_Shift_Del	A	-	p.F198fs
LIHC	TCGA-DD-A39Y-01	PABPC1	ENST00000318607.5,ENST00000523555.1,ENST00000517921.1,ENST00000519004.1,ENST00000522387.1	chr8	101725369:101725409:101727689:101727829:101730000:101730116,	101727690	101727829	101727739	101727739	Frame_Shift_Del	A	-	p.F198fs
LIHC	TCGA-DD-A39Y-01	YWHAZ	ENST00000457309.1	chr8	101937149:101937267:101960823:101961128:101965496:101965569,101937149:101937267:101960823:101961128:101964156:101964197,101937149:101937267:101960823:101961128:101965077:101965111,	101960824	101961128	101960893	101960893	Frame_Shift_Del	T	-	p.K75fs
LIHC	TCGA-DD-A39Y-01	YWHAZ	ENST00000395948.2	chr8	101937149:101937267:101960823:101960960:101965077:101965111,	101960824	101960960	101960893	101960893	Frame_Shift_Del	T	-	p.K75fs
LIHC	TCGA-DD-A39Y-01	RRM2B	ENST00000251810.3,ENST00000522368.1,ENST00000395912.2	chr8	103231041:103231175:103236273:103236368:103237112:103237246,	103236274	103236368	103236360	103236360	Frame_Shift_Del	A	-	p.L155fs
LIHC	TCGA-DD-A39Y-01	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103273373:103273487:103274142:103274298:103276701:103276786,	103274143	103274298	103274272	103274272	Frame_Shift_Del	A	-	p.F2571fs
LIHC	TCGA-DD-A39Y-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104337631	104337631	Frame_Shift_Del	G	-	p.G433fs
LIHC	TCGA-DD-A39Y-01	DCAF13	ENST00000297579.5,ENST00000521999.1,ENST00000518554.1	chr8	104442839:104442917:104444886:104444969:104447853:104448018,	104444887	104444969	104444907	104444907	Frame_Shift_Del	A	-	p.T393fs
LIHC	TCGA-DD-A39Y-01	EMC2	ENST00000519450.1,ENST00000220853.3,ENST00000520294.1	chr8	109489010:109489121:109491234:109491339:109498740:109498792,	109491235	109491339	109491320	109491320	Frame_Shift_Del	A	-	p.Q263fs
LIHC	TCGA-DD-A39Y-01	PKHD1L1	ENST00000378402.5	chr8	110437313:110437461:110439230:110439385:110441568:110441691,	110439231	110439385	110439367	110439367	Frame_Shift_Del	A	-	p.G994fs
LIHC	TCGA-DD-A39Y-01	EBAG9	ENST00000527709.1,ENST00000529502.1,ENST00000531677.1,ENST00000529931.1,ENST00000337573.5,ENST00000395785.2,ENST00000530629.1	chr8	110566093:110566172:110566957:110567116:110569163:110569256,	110566958	110567116	110567008	110567008	Frame_Shift_Del	A	-	p.V71fs
LIHC	TCGA-DD-A39Y-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631705	116631705	Frame_Shift_Del	C	-	p.G207fs
LIHC	TCGA-DD-A39Y-01	EXT1	ENST00000437196.1,ENST00000378204.2	chr8	118819455:118819616:118825110:118825200:118830673:118830769,	118825111	118825200	118825183	118825183	Frame_Shift_Del	A	-	p.F550fs
LIHC	TCGA-DD-A39Y-01	ENPP2	ENST00000259486.6	chr8	120605991:120606100:120608086:120608242:120612917:120612990,	120608087	120608242	120608143	120608143	Frame_Shift_Del	T	-	p.R360fs
LIHC	TCGA-DD-A39Y-01	TAF2	ENST00000378164.2	chr8	120756527:120756633:120758944:120759174:120768245:120768355,	120758945	120759174	120759047	120759047	Frame_Shift_Del	T	-	p.K1002fs
LIHC	TCGA-DD-A39Y-01	TAF2	ENST00000378164.2	chr8	120807771:120807871:120809229:120809343:120809901:120810070,	120809230	120809343	120809248	120809248	Frame_Shift_Del	A	-	p.F358fs
LIHC	TCGA-DD-A39Y-01	COL14A1	ENST00000537875.1,ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000498051.2	chr8	121174664:121174808:121180399:121180486:121209029:121209185,	121180400	121180486	121180412	121180412	Frame_Shift_Del	A	-	p.E121fs
LIHC	TCGA-DD-A39Y-01	COL14A1	ENST00000537875.1,ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000498051.2,ENST00000434620.1	chr8	121237326:121237453:121238865:121239005:121239458:121239591,	121238866	121239005	121238955	121238955	Frame_Shift_Del	G	-	p.G652fs
LIHC	TCGA-DD-A39Y-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000440844.1	chr8	121357684:121357802:121379409:121379487:121381568:121381724,	121379410	121379487	121379455	121379455	Frame_Shift_Del	C	-	p.T1708fs
LIHC	TCGA-DD-A39Y-01	MRPL13	ENST00000306185.3	chr8	121437545:121437606:121455424:121455548:121457307:121457339,121444269:121444363:121455424:121455548:121457307:121457339,	121455425	121455548	121455503	121455503	Frame_Shift_Del	T	-	p.M25fs
LIHC	TCGA-DD-A39Y-01	MRPL13	ENST00000306185.3	chr8	121437545:121437606:121455424:121455548:121457307:121457339,121444269:121444363:121455424:121455548:121457307:121457339,	121455425	121455548	121455507	121455507	Frame_Shift_Del	C	-	p.G23fs
LIHC	TCGA-DD-A39Y-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965917	123965917	Frame_Shift_Del	G	-	p.G724fs
LIHC	TCGA-DD-A39Y-01	DERL1	ENST00000405944.3	chr8	124037225:124037290:124042844:124042956:124054209:124054362,	124042845	124042956	124042953	124042953	Frame_Shift_Del	A	-	p.W53fs
LIHC	TCGA-DD-A39Y-01	TBC1D31	ENST00000522276.1,ENST00000378080.2,ENST00000309336.3,ENST00000518099.1,ENST00000522420.1,ENST00000521676.1,ENST00000524307.1,ENST00000521980.1,ENST00000327098.5,ENST00000287380.1	chr8	124096401:124096580:124105830:124105982:124109521:124109623,	124105831	124105982	124105886	124105886	Frame_Shift_Del	T	-	p.I192fs
LIHC	TCGA-DD-A39Y-01	FAM83A	ENST00000536633.1,ENST00000518448.1	chr8	124192398:124192469:124194265:124195576:124204042:124204210,	124194266	124195576	124195328	124195328	Frame_Shift_Del	C	-	p.P79fs
LIHC	TCGA-DD-A39Y-01	ATAD2	ENST00000521903.1	chr8	124359331:124359646:124360426:124360513:124361524:124361661,	124360427	124360513	124360449	124360449	Frame_Shift_Del	A	-	p.L624fs
LIHC	TCGA-DD-A39Y-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000517666.1,ENST00000521496.1	chr8	124359331:124359646:124360422:124360513:124361524:124361661,	124360423	124360513	124360449	124360449	Frame_Shift_Del	A	-	p.L624fs
LIHC	TCGA-DD-A39Y-01	FAM91A1	ENST00000519721.1,ENST00000334705.7,ENST00000521166.1	chr8	124799903:124799990:124801852:124801985:124810329:124810478,	124801853	124801985	124801888	124801888	Frame_Shift_Del	T	-	p.Y438fs
LIHC	TCGA-DD-A39Y-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125029867:125029958:125033789:125033909:125035683:125035836,	125033790	125033909	125033884	125033884	Frame_Shift_Del	A	-	p.E703fs
LIHC	TCGA-DD-A39Y-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047670	125047670	Frame_Shift_Del	C	-	p.H813fs
LIHC	TCGA-DD-A39Y-01	MTSS1	ENST00000519168.1,ENST00000395508.2	chr8	125568501:125568595:125569921:125570116:125575022:125575230,125568472:125568646:125569921:125570116:125575022:125575230,125568472:125568646:125569921:125570116:125570953:125571073,	125569922	125570116	125570074	125570074	Frame_Shift_Del	G	-	p.H360fs
LIHC	TCGA-DD-A39Y-01	SQLE	ENST00000265896.5,ENST00000518931.1,ENST00000523430.1	chr8	126030300:126030443:126030872:126030969:126033025:126033113,	126030873	126030969	126030876	126030876	Frame_Shift_Del	A	-	p.K452fs
LIHC	TCGA-DD-A39Y-01	NSMCE2	ENST00000517315.1,ENST00000522563.1,ENST00000287437.3	chr8	126369460:126369561:126369953:126370060:126379009:126379317,	126369954	126370060	126369975	126369975	Frame_Shift_Del	A	-	p.K181fs
LIHC	TCGA-DD-A39Y-01	FAM49B	ENST00000401979.2,ENST00000519824.2,ENST00000519540.1,ENST00000522250.1,ENST00000522941.1,ENST00000522746.1,ENST00000517654.1,ENST00000523509.1,ENST00000519110.1	chr8	130861488:130861615:130863080:130863160:130864407:130864524,	130863081	130863160	130863127	130863127	Frame_Shift_Del	A	-	p.C223fs
LIHC	TCGA-DD-A39Y-01	ASAP1	ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131104218:131104389:131124339:131124568:131127873:131127981,	131124340	131124568	131124499	131124499	Frame_Shift_Del	G	-	p.Q748fs
LIHC	TCGA-DD-A39Y-01	ASAP1	ENST00000521426.1,ENST00000524299.1,ENST00000521075.1,ENST00000357668.1,ENST00000520927.1,ENST00000518721.1	chr8	131226890:131226947:131249167:131249240:131370262:131370389,	131249168	131249240	131249190	131249190	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-DD-A39Y-01	ADCY8	ENST00000286355.5	chr8	131848522:131848695:131859669:131859759:131861847:131862049,	131859670	131859759	131859713	131859713	Frame_Shift_Del	A	-	p.F820fs
LIHC	TCGA-DD-A39Y-01	LRRC6	ENST00000518642.1,ENST00000519085.1,ENST00000522597.1,ENST00000250173.1,ENST00000519595.1	chr8	133623539:133623609:133627283:133627343:133634856:133634934,	133627284	133627343	133627314	133627314	Frame_Shift_Del	T	-	p.K315fs
LIHC	TCGA-DD-A39Y-01	PHF20L1	ENST00000220847.7,ENST00000460236.1,ENST00000395390.2,ENST00000395386.2	chr8	133849956:133850056:133851631:133851827:133854759:133855120,	133851632	133851827	133851648	133851648	Frame_Shift_Del	A	-	p.A736fs
LIHC	TCGA-DD-A39Y-01	PHF20L1	ENST00000220847.7,ENST00000477051.1,ENST00000460236.1,ENST00000395390.2,ENST00000395386.2	chr8	133854759:133855120:133856400:133856563:133858025:133858872,	133856401	133856563	133856440	133856440	Frame_Shift_Del	A	-	p.K931fs
LIHC	TCGA-DD-A39Y-01	PHF20L1	ENST00000220847.7,ENST00000477051.1,ENST00000460236.1,ENST00000395390.2,ENST00000395386.2	chr8	133854759:133855120:133856400:133856563:133858025:133858872,	133856401	133856563	133856518	133856518	Frame_Shift_Del	A	-	p.N956fs
LIHC	TCGA-DD-A39Y-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899043	133899043	Frame_Shift_Del	T	-	p.F476fs
LIHC	TCGA-DD-A39Y-01	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133920430:133920585:133923621:133923778:133925291:133925480,	133923622	133923778	133923630	133923630	Frame_Shift_Del	T	-	p.T1337fs
LIHC	TCGA-DD-A39Y-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133980122:133980215:133981702:133981814:133984038:133984118,	133981703	133981814	133981796	133981796	Frame_Shift_Del	A	-	p.E1986fs
LIHC	TCGA-DD-A39Y-01	KHDRBS3	ENST00000355849.5,ENST00000517394.1,ENST00000524199.1	chr8	136533479:136533598:136554896:136555013:136560996:136561143,	136554897	136555013	136554908	136554908	Frame_Shift_Del	G	-	p.V73fs
LIHC	TCGA-DD-A39Y-01	KHDRBS3	ENST00000355849.5,ENST00000517859.1,ENST00000524199.1,ENST00000524282.1	chr8	136560996:136561143:136569690:136569830:136594120:136594316,	136569691	136569830	136569815	136569815	Frame_Shift_Del	C	-	p.A199fs
LIHC	TCGA-DD-A39Y-01	KHDRBS3	ENST00000355849.5,ENST00000524199.1,ENST00000522079.1	chr8	136569698:136569830:136594120:136594316:136619197:136619270,	136594121	136594316	136594256	136594256	Frame_Shift_Del	C	-	p.V249fs
LIHC	TCGA-DD-A39Y-01	TRAPPC9	ENST00000521667.1,ENST00000438773.2,ENST00000389328.4,ENST00000520532.1,ENST00000520857.1,ENST00000389327.3	chr8	141034033:141034176:141231557:141231682:141262875:141263028,	141231558	141231682	141231656	141231656	Frame_Shift_Del	G	-	p.L918fs
LIHC	TCGA-DD-A39Y-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000520917.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000518509.1,ENST00000340930.3,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141745349:141745554:141749116:141749206:141753328:141753429,	141749117	141749206	141749145	141749145	Frame_Shift_Del	A	-	p.F599fs
LIHC	TCGA-DD-A39Y-01	DENND3	ENST00000424248.1,ENST00000519811.1,ENST00000262585.2,ENST00000520482.1,ENST00000518668.1	chr8	142176288:142176488:142178102:142178624:142185298:142185378,	142178103	142178624	142178416	142178416	Frame_Shift_Del	G	-	p.E689fs
LIHC	TCGA-DD-A39Y-01	SLC45A4	ENST00000024061.3,ENST00000517878.1,ENST00000433583.2,ENST00000519067.1	chr8	142225857:142226069:142227188:142227288:142228109:142229128,	142227189	142227288	142227236	142227236	Frame_Shift_Del	C	-	p.G510fs
LIHC	TCGA-DD-A39Y-01	CYP11B1	ENST00000377675.3	chr8	143960447:143960603:143960761:143960896:143960990:143961236,	143960762	143960896	143960864	143960864	Frame_Shift_Del	C	-	p.G91fs
LIHC	TCGA-DD-A39Y-01	TOP1MT	ENST00000329245.4,ENST00000521193.1,ENST00000519148.1,ENST00000523676.1	chr8	144392237:144392387:144397896:144397991:144398168:144398296,	144397897	144397991	144397981	144397981	Frame_Shift_Del	T	-	p.K393fs
LIHC	TCGA-DD-A39Y-01	SCRIB	ENST00000525051.1,ENST00000546337.1,ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144874778:144874805:144874877:144875037:144875145:144875253,	144874878	144875037	144874940	144874940	Frame_Shift_Del	C	-	p.G1372fs
LIHC	TCGA-DD-A39Y-01	SCRIB	ENST00000531942.1	chr8	144888576:144888654:144889093:144889183:144890778:144890847,	144889094	144889183	144889102	144889102	Frame_Shift_Del	C	-	p.D755fs
LIHC	TCGA-DD-A39Y-01	PUF60	ENST00000532884.1	chr8	144900031:144900143:144900245:144900455:144900542:144900646,	144900246	144900455	144900376	144900376	Frame_Shift_Del	C	-	p.G197fs
LIHC	TCGA-DD-A39Y-01	PUF60	ENST00000531951.1,ENST00000529999.1,ENST00000313352.7,ENST00000349157.6,ENST00000526683.1,ENST00000524570.1,ENST00000453551.2,ENST00000527744.1,ENST00000456095.2,ENST00000531897.1,ENST00000527197.1,ENST00000528999.1,ENST00000526459.1	chr8	144900165:144900245:144900362:144900455:144900542:144900646,	144900363	144900455	144900376	144900376	Frame_Shift_Del	C	-	p.G197fs
LIHC	TCGA-DD-A39Y-01	PUF60	ENST00000526151.1,ENST00000349157.6,ENST00000532127.1	chr8	144903987:144904083:144906482:144906569:144911153:144911196,144903987:144904083:144906482:144906569:144911449:144911469,	144906483	144906569	144906495	144906495	Frame_Shift_Del	C	-	p.W33fs
LIHC	TCGA-DD-A39Y-01	PUF60	ENST00000527744.1,ENST00000526459.1	chr8	144903987:144904083:144906482:144906566:144911449:144911469,	144906483	144906566	144906495	144906495	Frame_Shift_Del	C	-	p.W33fs
LIHC	TCGA-DD-A39Y-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998337	144998337	Frame_Shift_Del	C	-	p.R2058fs
LIHC	TCGA-DD-A39Y-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000528025.1,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000528131.1,ENST00000527816.1,ENST00000356346.3,ENST00000354589.3,ENST00000526416.1,ENST00000357649.2	chr8	145010146:145010182:145011146:145011239:145011332:145011410,	145011147	145011239	145011192	145011192	Frame_Shift_Del	G	-	p.P267fs
LIHC	TCGA-DD-A39Y-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057661	145057661	Frame_Shift_Del	G	-	p.P699fs
LIHC	TCGA-DD-A39Y-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057661	145057661	Frame_Shift_Del	G	-	p.P699fs
LIHC	TCGA-DD-A39Y-01	PARP10	ENST00000313028.7,ENST00000525486.1,ENST00000527262.1,ENST00000525879.1,ENST00000528625.1,ENST00000531707.1,ENST00000531537.1,ENST00000529842.1,ENST00000532311.1,ENST00000528136.1,ENST00000529311.1,ENST00000530478.1,ENST00000524918.1,ENST00000528914.1	chr8	145060081:145060143:145060222:145060401:145060525:145060590,	145060223	145060401	145060249	145060249	Frame_Shift_Del	C	-	p.G52fs
LIHC	TCGA-DD-A39Y-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065620	145065620	Frame_Shift_Del	G	-	p.G78fs
LIHC	TCGA-DD-A39Y-01	MROH1	ENST00000534366.1,ENST00000527552.1,ENST00000326134.5,ENST00000528919.1,ENST00000532255.1,ENST00000398656.4,ENST00000423230.2,ENST00000525287.1	chr8	145218673:145218751:145223197:145223343:145234357:145234489,	145223198	145223343	145223238	145223238	Frame_Shift_Del	C	-	p.D21fs
LIHC	TCGA-DD-A39Y-01	MROH1	ENST00000534366.1,ENST00000527552.1,ENST00000326134.5,ENST00000528919.1,ENST00000532255.1,ENST00000398656.4,ENST00000423230.2,ENST00000525287.1	chr8	145218673:145218751:145223197:145223343:145234357:145234489,	145223198	145223343	145223295	145223295	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-DD-A39Y-01	HSF1	ENST00000532338.1,ENST00000527328.1,ENST00000528838.1	chr8	145535451:145535522:145535648:145535930:145537196:145537302,	145535649	145535930	145535810	145535810	Frame_Shift_Del	C	-	p.A341fs
LIHC	TCGA-DD-A39Y-01	ADCK5	ENST00000308860.6	chr8	145616560:145616674:145616779:145616911:145616982:145617066,	145616780	145616911	145616895	145616895	Frame_Shift_Del	G	-	p.W305fs
LIHC	TCGA-DD-A39Y-01	ADCK5	ENST00000308860.6	chr8	145616779:145616911:145616982:145617066:145617140:145617222,	145616983	145617066	145617048	145617048	Frame_Shift_Del	G	-	p.Q332fs
LIHC	TCGA-DD-A39Y-01	CPSF1	ENST00000349769.3	chr8	145622957:145623094:145623168:145623347:145623691:145623833,	145623169	145623347	145623307	145623307	Frame_Shift_Del	G	-	p.P645fs
LIHC	TCGA-DD-A39Y-01	VPS28	ENST00000531924.1	chr8	145651100:145651155:145651408:145651591:145652291:145652362,	145651409	145651591	145651588	145651588	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-DD-A39Y-01	VPS28	ENST00000526734.1,ENST00000377348.2,ENST00000530790.1,ENST00000526204.1,ENST00000527797.2,ENST00000292510.4,ENST00000530836.1,ENST00000531032.1,ENST00000533806.1,ENST00000526054.1	chr8	145651408:145651446:145651562:145651591:145652291:145652362,	145651563	145651591	145651588	145651588	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-DD-A39Y-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145755794:145756000:145756085:145756255:145757688:145757780,	145756086	145756255	145756093	145756093	Frame_Shift_Del	A	-	p.F1017fs
LIHC	TCGA-DD-A39Y-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145773004	145773004	Frame_Shift_Del	G	-	p.P489fs
LIHC	TCGA-DD-A39Y-01	ZNF251	ENST00000292562.7,ENST00000525191.1	chr8	145979067:145979181:145979576:145979706:145980080:145980130,	145979577	145979706	145979637	145979637	Frame_Shift_Del	G	-	p.Q36fs
LIHC	TCGA-DD-A39Y-01	ZNF250	ENST00000533221.1	chr8	146112224:146112287:146114965:146115079:146115317:146115444,146108144:146108221:146114965:146115079:146115317:146115444,	146114966	146115079	146114986	146114986	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-DD-A39Y-01	SMARCA2	ENST00000349721.2,ENST00000382203.1,ENST00000357248.2,ENST00000382194.1	chr9	2097384:2097471:2101569:2101616:2104002:2104169,	2101570	2101616	2101603	2101603	Frame_Shift_Del	G	-	p.G1038fs
LIHC	TCGA-DD-A39Y-01	VLDLR	ENST00000382099.2,ENST00000382100.3	chr9	2645573:2645745:2646333:2646552:2647473:2647592,	2646334	2646552	2646368	2646368	Frame_Shift_Del	A	-	p.K507fs
LIHC	TCGA-DD-A39Y-01	GLIS3	ENST00000324333.10,ENST00000381971.3,ENST00000461870.1	chr9	3827697:3828408:3829309:3829492:3856008:3856184,	3829310	3829492	3829482	3829482	Frame_Shift_Del	C	-	p.G673fs
LIHC	TCGA-DD-A39Y-01	GLIS3	ENST00000324333.10,ENST00000381971.3,ENST00000461870.1	chr9	3829309:3829492:3856008:3856184:3879426:3879595,	3856009	3856184	3856144	3856144	Frame_Shift_Del	G	-	p.R626fs
LIHC	TCGA-DD-A39Y-01	SLC1A1	ENST00000262352.3,ENST00000422398.1	chr9	4572334:4572388:4573906:4574014:4576000:4576123,	4573907	4574014	4573924	4573924	Frame_Shift_Del	T	-	p.I262fs
LIHC	TCGA-DD-A39Y-01	SPATA6L	ENST00000461761.1,ENST00000454239.2,ENST00000381890.5,ENST00000475086.1	chr9	4622407:4622510:4625326:4625566:4629090:4629168,	4625327	4625566	4625489	4625489	Frame_Shift_Del	T	-	p.K169fs
LIHC	TCGA-DD-A39Y-01	SPATA6L	ENST00000223517.5,ENST00000485616.1	chr9	4625525:4625566:4626425:4626555:4627752:4627856,4625525:4625566:4626425:4626555:4629090:4629168,	4626426	4626555	4626481	4626481	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A39Y-01	SPATA6L	ENST00000461761.1,ENST00000496798.1,ENST00000223517.5,ENST00000471669.1,ENST00000406861.2,ENST00000485616.1,ENST00000454239.2,ENST00000381890.5,ENST00000451763.2,ENST00000381895.5,ENST00000486047.1	chr9	4635274:4635399:4661898:4662036:4666211:4666256,4656040:4656089:4661898:4662036:4666211:4666256,	4661899	4662036	4661985	4661985	Frame_Shift_Del	C	-	p.V31fs
LIHC	TCGA-DD-A39Y-01	KIAA2026	ENST00000540714.1,ENST00000399933.3	chr9	5929043:5929159:5954015:5954095:5968018:5968081,5944870:5944960:5954015:5954095:5968018:5968081,	5954016	5954095	5954051	5954051	Frame_Shift_Del	T	-	p.T753fs
LIHC	TCGA-DD-A39Y-01	KIAA2026	ENST00000540714.1,ENST00000399933.3	chr9	5929043:5929159:5954015:5954095:5968018:5968081,5944870:5944960:5954015:5954095:5968018:5968081,	5954016	5954095	5954073	5954073	Frame_Shift_Del	T	-	p.K745fs
LIHC	TCGA-DD-A39Y-01	GLDC	ENST00000321612.6	chr9	6536063:6536236:6540050:6540146:6550802:6550914,	6540051	6540146	6540101	6540101	Frame_Shift_Del	T	-	p.K872fs
LIHC	TCGA-DD-A39Y-01	GLDC	ENST00000321612.6	chr9	6536063:6536236:6540050:6540146:6550802:6550914,	6540051	6540146	6540127	6540127	Frame_Shift_Del	A	-	p.F863fs
LIHC	TCGA-DD-A39Y-01	GLDC	ENST00000321612.6	chr9	6602108:6602205:6604587:6604784:6605130:6605272,	6604588	6604784	6604644	6604644	Frame_Shift_Del	A	-	p.F334fs
LIHC	TCGA-DD-A39Y-01	GLDC	ENST00000321612.6	chr9	6605130:6605278:6606591:6606669:6610191:6610356,	6606592	6606669	6606635	6606635	Frame_Shift_Del	G	-	p.R224fs
LIHC	TCGA-DD-A39Y-01	GLDC	ENST00000321612.6	chr9	6605130:6605278:6606591:6606669:6610191:6610356,	6606592	6606669	6606642	6606642	Frame_Shift_Del	A	-	p.V221fs
LIHC	TCGA-DD-A39Y-01	KDM4C	ENST00000535193.1,ENST00000489243.1,ENST00000438023.1,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3,ENST00000401787.3	chr9	6792971:6793132:6805598:6805774:6814630:6814745,	6805599	6805774	6805725	6805725	Frame_Shift_Del	A	-	p.K92fs
LIHC	TCGA-DD-A39Y-01	KDM4C	ENST00000535193.1,ENST00000489243.1,ENST00000438023.1,ENST00000442236.2,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3	chr9	6814630:6814745:6849506:6849700:6880011:6880061,	6849507	6849700	6849546	6849546	Frame_Shift_Del	T	-	p.L159fs
LIHC	TCGA-DD-A39Y-01	KDM4C	ENST00000535193.1,ENST00000536108.1,ENST00000428870.2,ENST00000438023.1,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3	chr9	6984280:6984404:6986343:6986666:6990415:6990524,	6986344	6986666	6986613	6986613	Frame_Shift_Del	G	-	p.G542fs
LIHC	TCGA-DD-A39Y-01	KDM4C	ENST00000536108.1	chr9	7015852:7015929:7046861:7046917:7103684:7103870,	7046862	7046917	7046879	7046879	Frame_Shift_Del	T	-	p.N759fs
LIHC	TCGA-DD-A39Y-01	MPDZ	ENST00000447879.1,ENST00000541718.1,ENST00000536827.1,ENST00000381015.4,ENST00000546205.1,ENST00000319217.7,ENST00000381022.2	chr9	13193165:13193312:13196119:13196229:13205034:13205106,	13196120	13196229	13196180	13196180	Frame_Shift_Del	T	-	p.K532fs
LIHC	TCGA-DD-A39Y-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380894.1	chr9	14748398:14748637:14750124:14750274:14756371:14756444,	14750125	14750274	14750187	14750187	Frame_Shift_Del	G	-	p.P1833fs
LIHC	TCGA-DD-A39Y-01	TTC39B	ENST00000380850.4,ENST00000512701.2,ENST00000507993.1,ENST00000355694.2,ENST00000297615.5,ENST00000541445.1,ENST00000507285.1,ENST00000505732.1	chr9	15190552:15190660:15191187:15191253:15192587:15192693,	15191188	15191253	15191199	15191199	Frame_Shift_Del	A	-	p.S263fs
LIHC	TCGA-DD-A39Y-01	PSIP1	ENST00000380738.4,ENST00000380733.4	chr9	15464063:15465578:15466745:15466857:15468627:15468841,	15466746	15466857	15466795	15466795	Frame_Shift_Del	C	-	p.E495fs
LIHC	TCGA-DD-A39Y-01	CCDC171	ENST00000535968.1,ENST00000380701.3,ENST00000297641.3	chr9	15594038:15594170:15623264:15623411:15657124:15657217,	15623265	15623411	15623305	15623305	Frame_Shift_Del	A	-	p.E239fs
LIHC	TCGA-DD-A39Y-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436413	16436413	Frame_Shift_Del	G	-	p.P593fs
LIHC	TCGA-DD-A39Y-01	CNTLN	ENST00000380647.3	chr9	17273730:17273864:17298187:17298350:17309055:17309250,	17298188	17298350	17298346	17298346	Frame_Shift_Del	A	-	p.Q381fs
LIHC	TCGA-DD-A39Y-01	CNTLN	ENST00000262360.5,ENST00000425824.1,ENST00000380647.3	chr9	17298191:17298350:17309055:17309250:17330629:17330806,	17309056	17309250	17309214	17309214	Frame_Shift_Del	T	-	p.P435fs
LIHC	TCGA-DD-A39Y-01	HAUS6	ENST00000380502.3	chr9	19053140:19056402:19057958:19058999:19060085:19060221,	19057959	19058999	19058461	19058461	Frame_Shift_Del	A	-	p.F768fs
LIHC	TCGA-DD-A39Y-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19078173:19078300:19080476:19080670:19082870:19083041,	19080477	19080670	19080524	19080524	Frame_Shift_Del	T	-	p.K339fs
LIHC	TCGA-DD-A39Y-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19300184:19300329:19305349:19305525:19316414:19316515,	19305350	19305525	19305386	19305386	Frame_Shift_Del	C	-	p.P214fs
LIHC	TCGA-DD-A39Y-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000380432.2,ENST00000602925.1	chr9	19316618:19316837:19324359:19324505:19325936:19325972,	19324360	19324505	19324482	19324482	Frame_Shift_Del	T	-	p.F409fs
LIHC	TCGA-DD-A39Y-01	CAAP1	ENST00000333916.5,ENST00000517946.1,ENST00000535437.1	chr9	26884807:26884883:26886101:26886186:26887310:26887476,	26886102	26886186	26886160	26886160	Frame_Shift_Del	T	-	p.K177fs
LIHC	TCGA-DD-A39Y-01	IFT74	ENST00000443698.1,ENST00000433700.1,ENST00000380062.5	chr9	27047271:27047369:27048145:27048272:27055606:27055770,	27048146	27048272	27048239	27048239	Frame_Shift_Del	A	-	p.K434fs
LIHC	TCGA-DD-A39Y-01	SMU1	ENST00000397149.3,ENST00000536631.1	chr9	33057595:33057712:33060462:33060582:33062046:33062175,	33060463	33060582	33060546	33060546	Frame_Shift_Del	A	-	p.S223fs
LIHC	TCGA-DD-A39Y-01	SMU1	ENST00000397149.3	chr9	33068821:33068932:33071737:33071890:33073593:33073804,	33071738	33071890	33071838	33071838	Frame_Shift_Del	A	-	p.L97fs
LIHC	TCGA-DD-A39Y-01	NFX1	ENST00000379521.4,ENST00000318524.6,ENST00000379540.3	chr9	33332469:33332500:33338507:33338587:33342743:33342852,	33338508	33338587	33338547	33338547	Frame_Shift_Del	G	-	p.R692fs
LIHC	TCGA-DD-A39Y-01	AQP3	ENST00000473153.1	chr9	33442849:33442968:33443176:33443456:33443763:33443890,	33443177	33443456	33443376	33443376	Frame_Shift_Del	G	-	p.L106fs
LIHC	TCGA-DD-A39Y-01	AQP3	ENST00000297991.4	chr9	33442849:33442968:33443318:33443456:33443763:33443890,	33443319	33443456	33443376	33443376	Frame_Shift_Del	G	-	p.L106fs
LIHC	TCGA-DD-A39Y-01	ANKRD18B	ENST00000474881.2,ENST00000484634.1	chr9	33534367:33534505:33536875:33536943:33539446:33539500,	33536876	33536943	33536901	33536901	Frame_Shift_Del	A	-	p.K256fs
LIHC	TCGA-DD-A39Y-01	UBE2R2	ENST00000263228.3	chr9	33886878:33886965:33900171:33900269:33911961:33912096,	33900172	33900269	33900188	33900188	Frame_Shift_Del	T	-	p.I94fs
LIHC	TCGA-DD-A39Y-01	UBAP1	ENST00000543944.1	chr9	34234213:34234338:34241182:34242106:34249776:34249959,34220905:34220946:34241182:34242106:34249776:34249959,	34241183	34242106	34241461	34241461	Frame_Shift_Del	C	-	p.S146fs
LIHC	TCGA-DD-A39Y-01	UBAP1	ENST00000540348.1,ENST00000297661.4,ENST00000545103.1,ENST00000536252.1,ENST00000543944.1,ENST00000359544.2	chr9	34241850:34242106:34249776:34249959:34250655:34250757,	34249777	34249959	34249936	34249936	Frame_Shift_Del	A	-	p.K416fs
LIHC	TCGA-DD-A39Y-01	DNAI1	ENST00000437363.1,ENST00000488369.1,ENST00000242317.4	chr9	34489320:34489447:34490009:34490122:34490366:34490486,	34490010	34490122	34490093	34490093	Frame_Shift_Del	G	-	p.G158fs
LIHC	TCGA-DD-A39Y-01	CNTFR	ENST00000351266.4,ENST00000417345.1,ENST00000378980.3	chr9	34557523:34557690:34557864:34557982:34564596:34564830,	34557865	34557982	34557928	34557928	Frame_Shift_Del	A	-	p.F125fs
LIHC	TCGA-DD-A39Y-01	CCL21	ENST00000259607.2	chr9	34709001:34709424:34709496:34709679:34709773:34709894,	34709497	34709679	34709581	34709581	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-DD-A39Y-01	PIGO	ENST00000378617.3,ENST00000298004.5,ENST00000341666.3,ENST00000361778.2	chr9	35089376:35089447:35090062:35090277:35090462:35090597,	35090063	35090277	35090078	35090078	Frame_Shift_Del	A	-	p.F1018fs
LIHC	TCGA-DD-A39Y-01	PIGO	ENST00000378617.3,ENST00000298004.5,ENST00000341666.3,ENST00000361778.2	chr9	35093026:35093206:35093417:35093577:35093897:35094021,	35093418	35093577	35093528	35093528	Frame_Shift_Del	C	-	p.D277fs
LIHC	TCGA-DD-A39Y-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35093528	35093528	Frame_Shift_Del	C	-	p.D277fs
LIHC	TCGA-DD-A39Y-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35094217	35094217	Frame_Shift_Del	G	-	p.P217fs
LIHC	TCGA-DD-A39Y-01	PIGO	ENST00000465745.2,ENST00000341666.3,ENST00000361778.2	chr9	35094212:35094356:35095051:35095563:35096557:35096573,	35095052	35095563	35095307	35095307	Frame_Shift_Del	G	-	p.Q86fs
LIHC	TCGA-DD-A39Y-01	STOML2	ENST00000356493.5,ENST00000452248.2	chr9	35099957:35100169:35100594:35100723:35100928:35101008,	35100595	35100723	35100623	35100623	Frame_Shift_Del	G	-	p.P302fs
LIHC	TCGA-DD-A39Y-01	STOML2	ENST00000488050.1,ENST00000356493.5	chr9	35100928:35101008:35101131:35101276:35101706:35101808,35100928:35101008:35101131:35101276:35101422:35101490,	35101132	35101276	35101229	35101229	Frame_Shift_Del	C	-	p.G209fs
LIHC	TCGA-DD-A39Y-01	FAM214B	ENST00000605244.1,ENST00000488109.2,ENST00000378561.1,ENST00000603301.1,ENST00000378566.1,ENST00000322813.5,ENST00000378557.1	chr9	35104138:35105371:35105678:35105854:35105937:35106006,	35105679	35105854	35105748	35105748	Frame_Shift_Del	A	-	p.L465fs
LIHC	TCGA-DD-A39Y-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4,ENST00000485086.1	chr9	35231116:35231216:35236465:35236583:35237699:35237823,	35236466	35236583	35236538	35236538	Frame_Shift_Del	G	-	p.V75fs
LIHC	TCGA-DD-A39Y-01	UNC13B	ENST00000396787.1	chr9	35258989:35259047:35291065:35291101:35295692:35295927,	35291066	35291101	35291075	35291075	Frame_Shift_Del	C	-	p.T179fs
LIHC	TCGA-DD-A39Y-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35546810	35546810	Frame_Shift_Del	A	-	p.K98fs
LIHC	TCGA-DD-A39Y-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547557	35547557	Frame_Shift_Del	G	-	p.G348fs
LIHC	TCGA-DD-A39Y-01	RUSC2	ENST00000361226.3,ENST00000455600.1	chr9	35558193:35558368:35558458:35558564:35559222:35559269,	35558459	35558564	35558494	35558494	Frame_Shift_Del	A	-	p.K1091fs
LIHC	TCGA-DD-A39Y-01	CA9	ENST00000493245.1,ENST00000378357.4	chr9	35680114:35680136:35680749:35680831:35680961:35681135,	35680750	35680831	35680762	35680762	Frame_Shift_Del	C	-	p.A417fs
LIHC	TCGA-DD-A39Y-01	CA9	ENST00000493245.1,ENST00000378357.4	chr9	35680114:35680136:35680749:35680831:35680961:35681135,	35680750	35680831	35680768	35680768	Frame_Shift_Del	T	-	p.V419fs
LIHC	TCGA-DD-A39Y-01	RECK	ENST00000377966.3	chr9	36083361:36083559:36087690:36087958:36091160:36091340,	36087691	36087958	36087762	36087762	Frame_Shift_Del	A	-	p.K237fs
LIHC	TCGA-DD-A39Y-01	RECK	ENST00000377966.3	chr9	36083361:36083559:36087690:36087958:36091160:36091340,	36087691	36087958	36087842	36087842	Frame_Shift_Del	T	-	p.C263fs
LIHC	TCGA-DD-A39Y-01	RECK	ENST00000377966.3	chr9	36112301:36112473:36116981:36117174:36118753:36118964,	36116982	36117174	36117144	36117144	Frame_Shift_Del	A	-	p.G741fs
LIHC	TCGA-DD-A39Y-01	RNF38	ENST00000357058.3	chr9	36376004:36376124:36390463:36390613:36401094:36401193,36376004:36376124:36390463:36390613:36424609:36424680,36376004:36376124:36390463:36390613:36400550:36400869,	36390464	36390613	36390519	36390519	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-DD-A39Y-01	MELK	ENST00000541717.1	chr9	36657237:36657360:36665346:36665578:36669306:36669403,36651742:36651874:36665346:36665578:36669306:36669403,	36665347	36665578	36665430	36665430	Frame_Shift_Del	A	-	p.L388fs
LIHC	TCGA-DD-A39Y-01	PAX5	ENST00000523241.1,ENST00000414447.1,ENST00000377853.2,ENST00000523493.1,ENST00000377852.2,ENST00000520281.1,ENST00000520154.1,ENST00000377840.2,ENST00000377847.2	chr9	37014993:37015191:37020632:37020798:37033982:37034028,	37020633	37020798	37020744	37020744	Frame_Shift_Del	G	-	p.P34fs
LIHC	TCGA-DD-A39Y-01	PAX5	ENST00000523241.1,ENST00000414447.1,ENST00000377853.2,ENST00000523493.1,ENST00000377852.2,ENST00000520281.1,ENST00000520154.1,ENST00000377840.2,ENST00000377847.2	chr9	37014993:37015191:37020632:37020798:37033982:37034028,	37020633	37020798	37020764	37020764	Frame_Shift_Del	A	-	p.F27fs
LIHC	TCGA-DD-A39Y-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149933	39149933	Frame_Shift_Del	G	-	p.L507fs
LIHC	TCGA-DD-A39Y-01	CNTNAP3B	ENST00000276974.6,ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43800863:43801011:43815784:43815988:43816636:43816821,	43815785	43815988	43815973	43815973	Frame_Shift_Del	T	-	p.F244fs
LIHC	TCGA-DD-A39Y-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43844143:43844315:43849744:43849851:43853496:43853616,	43849745	43849851	43849817	43849817	Frame_Shift_Del	A	-	p.L574fs
LIHC	TCGA-DD-A39Y-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72962528:72962633:72962834:72962954:72965029:72965209,	72962835	72962954	72962887	72962887	Frame_Shift_Del	A	-	p.E941fs
LIHC	TCGA-DD-A39Y-01	TRPM3	ENST00000423814.3,ENST00000377105.1,ENST00000408909.2,ENST00000377110.3,ENST00000377111.2,ENST00000377106.1,ENST00000396292.4,ENST00000396285.1	chr9	73234991:73235281:73236159:73236189:73240106:73240247,	73236160	73236189	73236167	73236167	Frame_Shift_Del	C	-	p.G599fs
LIHC	TCGA-DD-A39Y-01	TMC1	ENST00000297784.5,ENST00000396237.3,ENST00000340019.3,ENST00000486417.1	chr9	75445366:75445445:75445546:75445598:75450866:75450977,	75445547	75445598	75445562	75445562	Frame_Shift_Del	A	-	p.K742fs
LIHC	TCGA-DD-A39Y-01	ALDH1A1	ENST00000297785.3	chr9	75520929:75520948:75524517:75524675:75526873:75527038,	75524518	75524675	75524525	75524525	Frame_Shift_Del	T	-	p.T451fs
LIHC	TCGA-DD-A39Y-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377263	77377263	Frame_Shift_Del	G	-	p.Q1442fs
LIHC	TCGA-DD-A39Y-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377271	77377271	Frame_Shift_Del	G	-	p.P1439fs
LIHC	TCGA-DD-A39Y-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77418709:77418802:77422949:77423090:77425730:77425784,	77422950	77423090	77422956	77422956	Frame_Shift_Del	T	-	p.K544fs
LIHC	TCGA-DD-A39Y-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000360280.3,ENST00000357409.5	chr9	79959924:79960058:79966232:79966362:79968324:79968547,	79966233	79966362	79966270	79966270	Frame_Shift_Del	A	-	p.K2443fs
LIHC	TCGA-DD-A39Y-01	VPS13A	ENST00000376636.3,ENST00000360280.3	chr9	79985941:79986065:79996891:79997003:80018151:80018237,	79996892	79997003	79996938	79996938	Frame_Shift_Del	T	-	p.F3042fs
LIHC	TCGA-DD-A39Y-01	GNA14	ENST00000341700.6,ENST00000464095.1	chr9	80039043:80039085:80040477:80040631:80043822:80043952,	80040478	80040631	80040581	80040581	Frame_Shift_Del	G	-	p.P258fs
LIHC	TCGA-DD-A39Y-01	GNA14	ENST00000341700.6,ENST00000464095.1	chr9	80039043:80039085:80040477:80040631:80043822:80043952,	80040478	80040631	80040598	80040598	Frame_Shift_Del	T	-	p.T253fs
LIHC	TCGA-DD-A39Y-01	GNAQ	ENST00000286548.4,ENST00000397476.3	chr9	80409378:80409508:80412435:80412564:80430531:80430686,	80412436	80412564	80412439	80412439	Frame_Shift_Del	A	-	p.F201fs
LIHC	TCGA-DD-A39Y-01	TLE4	ENST00000376537.4,ENST00000376520.4	chr9	82320803:82320857:82321661:82321814:82323032:82323077,82320803:82320857:82321661:82321814:82322037:82322133,	82321662	82321814	82321719	82321719	Frame_Shift_Del	A	-	p.K281fs
LIHC	TCGA-DD-A39Y-01	FRMD3	ENST00000376438.1,ENST00000376434.1	chr9	85857904:85858130:85862969:85863431:85905517:85905642,	85862970	85863431	85863257	85863257	Frame_Shift_Del	G	-	p.P457fs
LIHC	TCGA-DD-A39Y-01	KIF27	ENST00000297814.2	chr9	86485462:86485547:86495211:86495409:86498727:86498933,	86495212	86495409	86495259	86495259	Frame_Shift_Del	T	-	p.R866fs
LIHC	TCGA-DD-A39Y-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000337006.4,ENST00000376083.3	chr9	88201745:88201875:88203212:88203393:88204442:88204596,	88203213	88203393	88203323	88203323	Frame_Shift_Del	T	-	p.K931fs
LIHC	TCGA-DD-A39Y-01	GOLM1	ENST00000470762.2	chr9	88655655:88655783:88661384:88661487:88692326:88692454,	88661385	88661487	88661429	88661429	Frame_Shift_Del	A	-	p.F141fs
LIHC	TCGA-DD-A39Y-01	CTSL	ENST00000375894.5,ENST00000343150.5,ENST00000482054.1,ENST00000340342.6	chr9	90343164:90343311:90343499:90343724:90344487:90344595,	90343500	90343724	90343523	90343523	Frame_Shift_Del	T	-	p.A140fs
LIHC	TCGA-DD-A39Y-01	SPIN1	ENST00000469017.2,ENST00000541629.1,ENST00000483785.1,ENST00000485804.1,ENST00000375859.3	chr9	91063855:91063904:91077410:91077664:91083286:91083392,	91077411	91077664	91077555	91077555	Frame_Shift_Del	A	-	p.V82fs
LIHC	TCGA-DD-A39Y-01	SECISBP2	ENST00000534113.2,ENST00000339901.4,ENST00000375807.3	chr9	91972325:91972480:91972913:91973106:91973635:91974078,	91972914	91973106	91973069	91973069	Frame_Shift_Del	C	-	p.G808fs
LIHC	TCGA-DD-A39Y-01	ROR2	ENST00000550066.1,ENST00000375715.1,ENST00000375708.3	chr9	94488822:94489025:94493191:94493437:94495403:94495718,	94493192	94493437	94493271	94493271	Frame_Shift_Del	G	-	p.P368fs
LIHC	TCGA-DD-A39Y-01	SPTLC1	ENST00000262554.2	chr9	94797091:94797165:94800529:94800647:94808280:94808335,	94800530	94800647	94800609	94800609	Frame_Shift_Del	G	-	p.P392fs
LIHC	TCGA-DD-A39Y-01	CENPP	ENST00000375587.3	chr9	95094451:95094633:95099822:95099911:95107980:95108069,	95099823	95099911	95099830	95099830	Frame_Shift_Del	A	-	p.R99fs
LIHC	TCGA-DD-A39Y-01	ECM2	ENST00000444490.2,ENST00000344604.5	chr9	95272180:95272316:95274292:95274408:95276912:95276992,	95274293	95274408	95274333	95274333	Frame_Shift_Del	T	-	p.N378fs
LIHC	TCGA-DD-A39Y-01	ECM2	ENST00000375540.1,ENST00000344604.5,ENST00000395534.2	chr9	95279969:95280157:95284856:95285175:95298214:95298254,	95284857	95285175	95284966	95284966	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-DD-A39Y-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96019229:96019421:96021212:96021896:96024095:96024389,	96021213	96021896	96021234	96021234	Frame_Shift_Del	C	-	p.P803fs
LIHC	TCGA-DD-A39Y-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96019229:96019421:96021212:96021896:96024095:96024389,	96021213	96021896	96021499	96021499	Frame_Shift_Del	C	-	p.A890fs
LIHC	TCGA-DD-A39Y-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051651	96051651	Frame_Shift_Del	C	-	p.P1577fs
LIHC	TCGA-DD-A39Y-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051699	96051699	Frame_Shift_Del	A	-	p.K1592fs
LIHC	TCGA-DD-A39Y-01	WNK2	ENST00000411624.1	chr9	96060134:96060349:96070609:96070866:96079801:96079913,	96070610	96070866	96070631	96070631	Frame_Shift_Del	C	-	p.A2131fs
LIHC	TCGA-DD-A39Y-01	PHF2	ENST00000359246.4	chr9	96428271:96428342:96429361:96429522:96435866:96436144,	96429362	96429522	96429514	96429514	Frame_Shift_Del	C	-	p.N780fs
LIHC	TCGA-DD-A39Y-01	FANCC	ENST00000289081.3,ENST00000375305.1	chr9	97897627:97897784:97912204:97912369:97933360:97933425,	97912205	97912369	97912208	97912208	Frame_Shift_Del	A	-	p.L229fs
LIHC	TCGA-DD-A39Y-01	HSD17B3	ENST00000375262.2,ENST00000375263.3	chr9	99015084:99015192:99017149:99017225:99060697:99060744,	99017150	99017225	99017175	99017175	Frame_Shift_Del	T	-	p.K84fs
LIHC	TCGA-DD-A39Y-01	SLC35D2	ENST00000253270.7	chr9	99084279:99084362:99086372:99086451:99098998:99099066,	99086373	99086451	99086448	99086448	Frame_Shift_Del	A	-	p.F252fs
LIHC	TCGA-DD-A39Y-01	SLC35D2	ENST00000253270.7	chr9	99086372:99086451:99098998:99099066:99106185:99106275,	99098999	99099066	99099002	99099002	Frame_Shift_Del	A	-	p.L250fs
LIHC	TCGA-DD-A39Y-01	HABP4	ENST00000375251.3,ENST00000466976.1,ENST00000375249.4	chr9	99246743:99246915:99250370:99250556:99252263:99253618,	99250371	99250556	99250405	99250405	Frame_Shift_Del	T	-	p.V345fs
LIHC	TCGA-DD-A39Y-01	CTSV	ENST00000538255.1,ENST00000259470.5	chr9	99797809:99797975:99798804:99799029:99799533:99799680,	99798805	99799029	99798864	99798864	Frame_Shift_Del	G	-	p.Q188fs
LIHC	TCGA-DD-A39Y-01	CCDC180	ENST00000529487.1,ENST00000375202.2,ENST00000494917.2,ENST00000357054.1,ENST00000395220.1	chr9	100075517:100075627:100076674:100076803:100076899:100077010,	100076675	100076803	100076702	100076702	Frame_Shift_Del	G	-	p.G208fs
LIHC	TCGA-DD-A39Y-01	CCDC180	ENST00000529487.1,ENST00000375202.2,ENST00000494917.2,ENST00000357054.1,ENST00000395220.1	chr9	100075517:100075627:100076674:100076803:100076899:100077010,	100076675	100076803	100076769	100076769	Frame_Shift_Del	A	-	p.E229fs
LIHC	TCGA-DD-A39Y-01	TSTD2	ENST00000354801.2,ENST00000341170.4	chr9	100387962:100388279:100389679:100389894:100395524:100395583,	100389680	100389894	100389705	100389705	Frame_Shift_Del	T	-	p.K48fs
LIHC	TCGA-DD-A39Y-01	TSTD2	ENST00000375172.2	chr9	100387962:100388279:100389587:100389894:100395524:100395583,	100389588	100389894	100389705	100389705	Frame_Shift_Del	T	-	p.K48fs
LIHC	TCGA-DD-A39Y-01	NCBP1	ENST00000375147.3	chr9	100403843:100403944:100405485:100405642:100407398:100407506,	100405486	100405642	100405558	100405558	Frame_Shift_Del	T	-	p.N99fs
LIHC	TCGA-DD-A39Y-01	NCBP1	ENST00000478100.1,ENST00000375147.3	chr9	100409773:100409843:100410289:100410505:100412784:100412844,	100410290	100410505	100410326	100410326	Frame_Shift_Del	A	-	p.K241fs
LIHC	TCGA-DD-A39Y-01	TRIM14	ENST00000478401.1,ENST00000342043.3,ENST00000341469.2,ENST00000375098.3	chr9	100857148:100857311:100862212:100862446:100872170:100872266,	100862213	100862446	100862329	100862329	Frame_Shift_Del	G	-	p.L141fs
LIHC	TCGA-DD-A39Y-01	ANKS6	ENST00000444472.1,ENST00000375019.2,ENST00000375018.1,ENST00000540940.1,ENST00000353234.4	chr9	101498808:101498905:101507840:101507957:101513310:101513378,	101507841	101507957	101507889	101507889	Frame_Shift_Del	C	-	p.G821fs
LIHC	TCGA-DD-A39Y-01	ANKS6	ENST00000375019.2,ENST00000375018.1,ENST00000540940.1,ENST00000353234.4	chr9	101540507:101540706:101542470:101542619:101544748:101544855,	101542471	101542619	101542492	101542492	Frame_Shift_Del	G	-	p.P449fs
LIHC	TCGA-DD-A39Y-01	ANKS6	ENST00000375019.2,ENST00000375018.1,ENST00000540940.1,ENST00000353234.4	chr9	101542470:101542619:101544748:101544855:101546234:101546439,	101544749	101544855	101544793	101544793	Frame_Shift_Del	T	-	p.N392fs
LIHC	TCGA-DD-A39Y-01	GALNT12	ENST00000375011.3	chr9	101594053:101594239:101597530:101597648:101599253:101599430,	101597531	101597648	101597643	101597643	Frame_Shift_Del	T	-	p.F344fs
LIHC	TCGA-DD-A39Y-01	TGFBR1	ENST00000374990.2	chr9	101867431:101867584:101891136:101891382:101894790:101895008,101867431:101867584:101891136:101891382:101900140:101900346,	101891137	101891382	101891309	101891309	Frame_Shift_Del	A	-	p.S90fs
LIHC	TCGA-DD-A39Y-01	TGFBR1	ENST00000374994.4,ENST00000549766.1,ENST00000550253.1,ENST00000552516.1	chr9	101894790:101895021:101900140:101900371:101904817:101904985,	101900141	101900371	101900203	101900203	Frame_Shift_Del	A	-	p.K213fs
LIHC	TCGA-DD-A39Y-01	TEX10	ENST00000429235.1,ENST00000535814.1,ENST00000374902.4,ENST00000537512.1	chr9	103092212:103092451:103102538:103102651:103108353:103108597,	103102539	103102651	103102592	103102592	Frame_Shift_Del	A	-	p.F399fs
LIHC	TCGA-DD-A39Y-01	ALDOB	ENST00000374855.4	chr9	104182859:104184186:104187124:104187324:104187734:104187909,	104187125	104187324	104187180	104187180	Frame_Shift_Del	C	-	p.G316fs
LIHC	TCGA-DD-A39Y-01	SMC2	ENST00000440179.1,ENST00000374793.3,ENST00000303219.8,ENST00000374787.3,ENST00000286398.7	chr9	106862373:106862484:106862669:106862714:106864240:106864474,	106862670	106862714	106862708	106862708	Frame_Shift_Del	A	-	p.L210fs
LIHC	TCGA-DD-A39Y-01	NIPSNAP3A	ENST00000374767.4	chr9	107515186:107515345:107516831:107516981:107521365:107521411,	107516832	107516981	107516883	107516883	Frame_Shift_Del	G	-	p.W161fs
LIHC	TCGA-DD-A39Y-01	NIPSNAP3B	ENST00000374762.3	chr9	107531143:107531302:107533129:107533279:107535102:107535189,	107533130	107533279	107533148	107533148	Frame_Shift_Del	T	-	p.V150fs
LIHC	TCGA-DD-A39Y-01	ABCA1	ENST00000374736.3	chr9	107565564:107565597:107566906:107567001:107568521:107568711,	107566907	107567001	107566996	107566996	Frame_Shift_Del	T	-	p.K1490fs
LIHC	TCGA-DD-A39Y-01	RAD23B	ENST00000419616.1,ENST00000358015.3	chr9	110045807:110045976:110062421:110062503:110064315:110064395,	110062422	110062503	110062453	110062453	Frame_Shift_Del	A	-	p.E33fs
LIHC	TCGA-DD-A39Y-01	PTPN3	ENST00000374541.2	chr9	112211090:112211135:112216775:112216854:112219452:112219495,	112216776	112216854	112216814	112216814	Frame_Shift_Del	A	-	p.F110fs
LIHC	TCGA-DD-A39Y-01	TXN	ENST00000374517.5	chr9	113013099:113013159:113013637:113013742:113018691:113018746,	113013638	113013742	113013641	113013641	Frame_Shift_Del	A	-	p.F42fs
LIHC	TCGA-DD-A39Y-01	ZNF483	ENST00000358151.4,ENST00000309235.5,ENST00000355824.3	chr9	114289547:114290087:114293154:114293243:114296018:114296145,	114293155	114293243	114293208	114293208	Frame_Shift_Del	A	-	p.K156fs
LIHC	TCGA-DD-A39Y-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114348277:114348445:114355205:114355262:114356501:114356545,	114355206	114355262	114355214	114355214	Frame_Shift_Del	T	-	p.Q67fs
LIHC	TCGA-DD-A39Y-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114348277:114348445:114355205:114355262:114356501:114356545,	114355206	114355262	114355220	114355220	Frame_Shift_Del	C	-	p.G65fs
LIHC	TCGA-DD-A39Y-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000532348.1,ENST00000415074.1,ENST00000374270.3	chr9	114875071:114875148:114886536:114886716:114904599:114904746,	114886537	114886716	114886605	114886605	Frame_Shift_Del	G	-	p.P273fs
LIHC	TCGA-DD-A39Y-01	SLC31A1	ENST00000374212.4	chr9	115983866:115983958:116018393:116018557:116019392:116019465,	116018394	116018557	116018439	116018439	Frame_Shift_Del	C	-	p.S4fs
LIHC	TCGA-DD-A39Y-01	RGS3	ENST00000394646.3,ENST00000478599.1,ENST00000462143.1,ENST00000343817.5,ENST00000462403.1,ENST00000342620.5,ENST00000374134.3,ENST00000374140.2,ENST00000487344.1,ENST00000350696.5	chr9	116357198:116357260:116357878:116358045:116359047:116360003,	116357879	116358045	116357959	116357959	Frame_Shift_Del	T	-	p.F1109fs
LIHC	TCGA-DD-A39Y-01	KIF12	ENST00000374118.3	chr9	116854821:116854922:116855508:116855613:116855686:116855777,	116855509	116855613	116855535	116855535	Frame_Shift_Del	G	-	p.L386fs
LIHC	TCGA-DD-A39Y-01	COL27A1	ENST00000356083.3	chr9	116993358:116993412:116994101:116994146:116997878:116997932,	116994102	116994146	116994119	116994119	Frame_Shift_Del	G	-	p.V846fs
LIHC	TCGA-DD-A39Y-01	COL27A1	ENST00000494090.2	chr9	116993358:116993412:116994101:116994138:116997878:116997932,	116994102	116994138	116994119	116994119	Frame_Shift_Del	G	-	p.V846fs
LIHC	TCGA-DD-A39Y-01	ORM1	ENST00000259396.8,ENST00000477456.1	chr9	117086301:117086368:117087069:117087177:117087328:117087432,	117087070	117087177	117087160	117087160	Frame_Shift_Del	G	-	p.W140fs
LIHC	TCGA-DD-A39Y-01	ORM2	ENST00000431067.2,ENST00000412657.1	chr9	117093071:117093142:117093846:117093954:117094105:117094201,	117093847	117093954	117093933	117093933	Frame_Shift_Del	A	-	p.N139fs
LIHC	TCGA-DD-A39Y-01	PAPPA	ENST00000328252.3	chr9	118989709:118989831:118997417:118997916:119028135:119028264,	118997418	118997916	118997604	118997604	Frame_Shift_Del	G	-	p.W807fs
LIHC	TCGA-DD-A39Y-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119495677:119495802:119567910:119568099:119582895:119583062,	119567911	119568099	119568063	119568063	Frame_Shift_Del	T	-	p.K748fs
LIHC	TCGA-DD-A39Y-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4,ENST00000425647.1	chr9	123184970:123185019:123199572:123199805:123201676:123202250,	123199573	123199805	123199783	123199783	Frame_Shift_Del	G	-	p.Q1249fs
LIHC	TCGA-DD-A39Y-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123230137:123230275:123232388:123232498:123234025:123234140,	123232389	123232498	123232412	123232412	Frame_Shift_Del	A	-	p.S649fs
LIHC	TCGA-DD-A39Y-01	PHF19	ENST00000467266.1	chr9	123623388:123623452:123624195:123624283:123624865:123625027,123623388:123623452:123624195:123624283:123624890:123625304,	123624196	123624283	123624231	123624231	Frame_Shift_Del	T	-	p.R395fs
LIHC	TCGA-DD-A39Y-01	C5	ENST00000223642.1	chr9	123734207:123734270:123737056:123737209:123738977:123739183,	123737057	123737209	123737121	123737121	Frame_Shift_Del	T	-	p.K1318fs
LIHC	TCGA-DD-A39Y-01	CNTRL	ENST00000373855.1,ENST00000373851.2,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123887998:123888214:123898083:123898260:123900822:123900957,	123898084	123898260	123898194	123898194	Frame_Shift_Del	A	-	p.L712fs
LIHC	TCGA-DD-A39Y-01	CNTRL	ENST00000431571.1,ENST00000373855.1,ENST00000373851.2,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123907120:123907237:123907521:123907663:123908385:123908534,	123907522	123907663	123907580	123907580	Frame_Shift_Del	A	-	p.E1076fs
LIHC	TCGA-DD-A39Y-01	CNTRL	ENST00000373845.2,ENST00000373855.1,ENST00000238341.5,ENST00000373850.1	chr9	123931888:123932094:123933685:123933826:123935520:123935787,	123933686	123933826	123933720	123933720	Frame_Shift_Del	A	-	p.E2104fs
LIHC	TCGA-DD-A39Y-01	RAB14	ENST00000373840.4,ENST00000451303.1	chr9	123949230:123949297:123952831:123953009:123954448:123954502,	123952832	123953009	123952938	123952938	Frame_Shift_Del	T	-	p.I60fs
LIHC	TCGA-DD-A39Y-01	GSN	ENST00000432226.1,ENST00000341272.2,ENST00000373823.3	chr9	124043788:124043840:124064240:124064445:124065188:124065343,	124064241	124064445	124064348	124064348	Frame_Shift_Del	C	-	p.N33fs
LIHC	TCGA-DD-A39Y-01	GSN	ENST00000432226.1,ENST00000341272.2,ENST00000373823.3	chr9	124043788:124043840:124064240:124064445:124065188:124065343,	124064241	124064445	124064350	124064350	Frame_Shift_Del	T	-	p.L34fs
LIHC	TCGA-DD-A39Y-01	RC3H2	ENST00000335387.5,ENST00000373665.2,ENST00000423239.2,ENST00000357244.2,ENST00000373670.1,ENST00000498479.1	chr9	125645482:125645658:125652590:125652824:125655187:125655305,	125652591	125652824	125652757	125652757	Frame_Shift_Del	G	-	p.N139fs
LIHC	TCGA-DD-A39Y-01	RC3H2	ENST00000335387.5,ENST00000373665.2,ENST00000423239.2,ENST00000357244.2,ENST00000373670.1,ENST00000498479.1	chr9	125645482:125645658:125652590:125652824:125655187:125655305,	125652591	125652824	125652788	125652788	Frame_Shift_Del	G	-	p.P129fs
LIHC	TCGA-DD-A39Y-01	RABGAP1	ENST00000373647.4,ENST00000317419.7	chr9	125703368:125703372:125719289:125719488:125748493:125748695,125703368:125703372:125719289:125719488:125746763:125746867,	125719290	125719488	125719362	125719362	Frame_Shift_Del	A	-	p.G8fs
LIHC	TCGA-DD-A39Y-01	CRB2	ENST00000460253.1,ENST00000373629.2,ENST00000373631.3	chr9	126136857:126136974:126137495:126137622:126139116:126139954,	126137496	126137622	126137529	126137529	Frame_Shift_Del	C	-	p.N1180fs
LIHC	TCGA-DD-A39Y-01	DENND1A	ENST00000473039.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000373618.1,ENST00000394215.2,ENST00000474676.1	chr9	126414291:126414402:126429304:126429358:126433569:126433650,	126429305	126429358	126429339	126429339	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A39Y-01	PSMB7	ENST00000259457.3	chr9	127146876:127146935:127167595:127167711:127174630:127174771,	127167596	127167711	127167673	127167673	Frame_Shift_Del	C	-	p.G145fs
LIHC	TCGA-DD-A39Y-01	MAPKAP1	ENST00000373503.3	chr9	128419947:128420078:128432096:128432186:128469249:128469456,	128432097	128432186	128432132	128432132	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A39Y-01	MAPKAP1	ENST00000373503.3	chr9	128419947:128420078:128432096:128432186:128469249:128469456,	128432097	128432186	128432150	128432150	Frame_Shift_Del	T	-	p.N99fs
LIHC	TCGA-DD-A39Y-01	PBX3	ENST00000373492.2,ENST00000538998.1,ENST00000342287.5	chr9	128697750:128697886:128722962:128723128:128725290:128725380,	128722963	128723128	128723034	128723034	Frame_Shift_Del	C	-	p.N326fs
LIHC	TCGA-DD-A39Y-01	MVB12B	ENST00000545391.1,ENST00000489637.1	chr9	129089140:129089289:129102786:129102909:129143342:129143450,	129102787	129102909	129102858	129102858	Frame_Shift_Del	G	-	p.T51fs
LIHC	TCGA-DD-A39Y-01	RALGPS1	ENST00000319107.4	chr9	129739973:129740024:129796709:129796793:129812321:129812411,129739973:129740024:129796709:129796793:129815125:129815218,	129796710	129796793	129796756	129796756	Frame_Shift_Del	C	-	p.A88fs
LIHC	TCGA-DD-A39Y-01	RALGPS1	ENST00000319107.4	chr9	129739973:129740024:129796709:129796793:129812321:129812411,129739973:129740024:129796709:129796793:129815125:129815218,	129796710	129796793	129796785	129796785	Frame_Shift_Del	T	-	p.F98fs
LIHC	TCGA-DD-A39Y-01	RALGPS1	ENST00000319107.4	chr9	129739973:129740024:129796709:129796793:129812321:129812411,129739973:129740024:129796709:129796793:129815125:129815218,	129796710	129796793	129796788	129796788	Frame_Shift_Del	A	-	p.N99fs
LIHC	TCGA-DD-A39Y-01	RALGPS1	ENST00000259351.5,ENST00000424082.2,ENST00000438723.1,ENST00000471643.1	chr9	129974954:129974998:129975222:129975328:129977029:129977121,	129975223	129975328	129975246	129975246	Frame_Shift_Del	G	-	p.K490fs
LIHC	TCGA-DD-A39Y-01	RALGPS1	ENST00000373434.1	chr9	129974954:129974998:129975246:129975328:129977029:129977121,	129975247	129975328	129975248	129975248	Frame_Shift_Del	T	-	p.V491fs
LIHC	TCGA-DD-A39Y-01	RALGPS1	ENST00000259351.5,ENST00000424082.2,ENST00000438723.1,ENST00000471643.1	chr9	129974954:129974998:129975222:129975328:129977029:129977121,	129975223	129975328	129975248	129975248	Frame_Shift_Del	T	-	p.V491fs
LIHC	TCGA-DD-A39Y-01	STXBP1	ENST00000373302.3,ENST00000373299.1	chr9	130420653:130420730:130422308:130422387:130423380:130423484,	130422309	130422387	130422341	130422341	Frame_Shift_Del	C	-	p.D93fs
LIHC	TCGA-DD-A39Y-01	FPGS	ENST00000460181.1,ENST00000393706.2,ENST00000489522.1,ENST00000488506.1,ENST00000488307.1,ENST00000373247.2,ENST00000373225.3,ENST00000467826.1	chr9	130570542:130570590:130570836:130570984:130571078:130571161,	130570837	130570984	130570879	130570879	Frame_Shift_Del	G	-	p.G240fs
LIHC	TCGA-DD-A39Y-01	ENG	ENST00000373203.4	chr9	130577290:130578085:130578221:130578332:130579427:130579482,	130578222	130578332	130578273	130578273	Frame_Shift_Del	G	-	p.L601fs
LIHC	TCGA-DD-A39Y-01	SLC25A25	ENST00000373069.5,ENST00000373064.5,ENST00000373066.5,ENST00000433501.1,ENST00000432073.2,ENST00000373068.2	chr9	130866000:130866118:130868007:130868160:130868428:130868536,	130868008	130868160	130868074	130868074	Frame_Shift_Del	G	-	p.G270fs
LIHC	TCGA-DD-A39Y-01	PTGES2	ENST00000493205.1,ENST00000496594.1	chr9	130883104:130883552:130884640:130885413:130885980:130886034,	130884641	130885413	130884666	130884666	Frame_Shift_Del	C	-	p.G327fs
LIHC	TCGA-DD-A39Y-01	DNM1	ENST00000372923.3,ENST00000393594.3,ENST00000486160.1,ENST00000475805.1,ENST00000441149.2,ENST00000341179.7	chr9	130981327:130981531:130982266:130982365:130982459:130982620,	130982267	130982365	130982281	130982281	Frame_Shift_Del	G	-	p.G202fs
LIHC	TCGA-DD-A39Y-01	DNM1	ENST00000393594.3,ENST00000486160.1,ENST00000475805.1	chr9	130985071:130985139:130988313:130988452:130994264:130994403,130985071:130985139:130988313:130988452:130996299:130996386,	130988314	130988452	130988393	130988393	Frame_Shift_Del	A	-	p.K426fs
LIHC	TCGA-DD-A39Y-01	DNM1	ENST00000372923.3,ENST00000393594.3,ENST00000486160.1,ENST00000475805.1,ENST00000441149.2,ENST00000341179.7	chr9	131004510:131004624:131008672:131008782:131009653:131009666,	131008673	131008782	131008736	131008736	Frame_Shift_Del	T	-	p.F579fs
LIHC	TCGA-DD-A39Y-01	SLC27A4	ENST00000300456.4	chr9	131103006:131103117:131105405:131105572:131107433:131107828,	131105406	131105572	131105435	131105435	Frame_Shift_Del	G	-	p.V8fs
LIHC	TCGA-DD-A39Y-01	CERCAM	ENST00000372842.1,ENST00000463535.1,ENST00000372838.4	chr9	131193537:131193582:131196380:131196508:131196688:131196886,	131196381	131196508	131196403	131196403	Frame_Shift_Del	G	-	p.R331fs
LIHC	TCGA-DD-A39Y-01	GLE1	ENST00000372770.4,ENST00000539582.1	chr9	131267084:131267183:131271154:131271376:131277807:131277918,	131271155	131271376	131271305	131271305	Frame_Shift_Del	T	-	p.F84fs
LIHC	TCGA-DD-A39Y-01	GLE1	ENST00000309971.4,ENST00000372770.4,ENST00000539582.1	chr9	131289734:131289804:131295791:131295934:131296039:131296230,	131295792	131295934	131295852	131295852	Frame_Shift_Del	A	-	p.Q458fs
LIHC	TCGA-DD-A39Y-01	GLE1	ENST00000309971.4,ENST00000372770.4,ENST00000539582.1	chr9	131289734:131289804:131295791:131295934:131296039:131296230,	131295792	131295934	131295886	131295886	Frame_Shift_Del	C	-	p.N469fs
LIHC	TCGA-DD-A39Y-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131348026:131348244:131349884:131349977:131351087:131351222,	131349885	131349977	131349950	131349950	Frame_Shift_Del	T	-	p.A948fs
LIHC	TCGA-DD-A39Y-01	ZDHHC12	ENST00000452105.1,ENST00000372672.2	chr9	131484287:131484365:131484716:131484853:131486272:131486385,	131484717	131484853	131484827	131484827	Frame_Shift_Del	C	-	p.E57fs
LIHC	TCGA-DD-A39Y-01	ZDHHC12	ENST00000406904.2	chr9	131484287:131484365:131484716:131485018:131486272:131486385,	131484717	131485018	131484827	131484827	Frame_Shift_Del	C	-	p.E57fs
LIHC	TCGA-DD-A39Y-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131669818	131669818	Frame_Shift_Del	C	-	p.F125fs
LIHC	TCGA-DD-A39Y-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131671231	131671231	Frame_Shift_Del	G	-	p.L596fs
LIHC	TCGA-DD-A39Y-01	PHYHD1	ENST00000424503.1	chr9	131689324:131689475:131696005:131696136:131696289:131696337,	131696006	131696136	131696122	131696122	Frame_Shift_Del	T	-	p.V85fs
LIHC	TCGA-DD-A39Y-01	PHYHD1	ENST00000426694.1,ENST00000412476.1,ENST00000451000.1,ENST00000421063.2,ENST00000308941.5,ENST00000372592.3,ENST00000353176.5	chr9	131689324:131689475:131696060:131696136:131696289:131696337,	131696061	131696136	131696122	131696122	Frame_Shift_Del	T	-	p.V85fs
LIHC	TCGA-DD-A39Y-01	SH3GLB2	ENST00000372559.1,ENST00000416629.1,ENST00000416230.1,ENST00000372554.4,ENST00000483980.1,ENST00000417224.1	chr9	131783369:131783498:131784560:131784702:131790370:131790464,	131784561	131784702	131784649	131784649	Frame_Shift_Del	A	-	p.F39fs
LIHC	TCGA-DD-A39Y-01	GPR107	ENST00000372410.3,ENST00000493417.1,ENST00000347136.6	chr9	132816199:132816352:132837914:132838028:132838690:132838741,	132837915	132838028	132837930	132837930	Frame_Shift_Del	A	-	p.K53fs
LIHC	TCGA-DD-A39Y-01	HMCN2	ENST00000428715.1	chr9	133285957:133286039:133294158:133294428:133297963:133298113,	133294159	133294428	133294182	133294182	Frame_Shift_Del	C	-	p.P39fs
LIHC	TCGA-DD-A39Y-01	ABL1	ENST00000318560.5,ENST00000372348.2	chr9	133730187:133730483:133738149:133738422:133747515:133747600,	133738150	133738422	133738360	133738360	Frame_Shift_Del	G	-	p.G254fs
LIHC	TCGA-DD-A39Y-01	ABL1	ENST00000318560.5,ENST00000372348.2	chr9	133748246:133748424:133750254:133750439:133753801:133753954,	133750255	133750439	133750337	133750337	Frame_Shift_Del	G	-	p.G390fs
LIHC	TCGA-DD-A39Y-01	ABL1	ENST00000318560.5,ENST00000372348.2	chr9	133748246:133748424:133750254:133750439:133753801:133753954,	133750255	133750439	133750379	133750379	Frame_Shift_Del	A	-	p.K404fs
LIHC	TCGA-DD-A39Y-01	NUP214	ENST00000451030.1,ENST00000359428.5,ENST00000411637.2	chr9	134010284:134010391:134011326:134011393:134014667:134014736,	134011327	134011393	134011383	134011383	Frame_Shift_Del	A	-	p.Q332fs
LIHC	TCGA-DD-A39Y-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000357304.4	chr9	134305531:134305646:134308003:134308181:134312006:134312109,	134308004	134308181	134308161	134308161	Frame_Shift_Del	G	-	p.Q91fs
LIHC	TCGA-DD-A39Y-01	PRRC2B	ENST00000405995.1,ENST00000458550.1	chr9	134346174:134346370:134348894:134349111:134353130:134353336,	134348895	134349111	134348979	134348979	Frame_Shift_Del	A	-	p.Q731fs
LIHC	TCGA-DD-A39Y-01	PRRC2B	ENST00000405995.1,ENST00000458550.1	chr9	134346174:134346370:134348894:134349111:134353130:134353336,	134348895	134349111	134348994	134348994	Frame_Shift_Del	C	-	p.T736fs
LIHC	TCGA-DD-A39Y-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134350710	134350710	Frame_Shift_Del	G	-	p.R1065fs
LIHC	TCGA-DD-A39Y-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000372249.1,ENST00000357304.4	chr9	134357112:134357195:134357757:134357949:134358096:134358294,	134357758	134357949	134357760	134357760	Frame_Shift_Del	G	-	p.Q1662fs
LIHC	TCGA-DD-A39Y-01	POMT1	ENST00000418774.1	chr9	134378395:134378460:134379575:134379727:134381500:134381607,134378395:134378460:134379575:134379727:134381789:134381840,134378345:134378700:134379575:134379727:134381500:134381607,	134379576	134379727	134379680	134379680	Frame_Shift_Del	G	-	p.M25fs
LIHC	TCGA-DD-A39Y-01	POMT1	ENST00000448212.1,ENST00000402686.3,ENST00000441334.1,ENST00000430619.1,ENST00000415075.1,ENST00000404875.2,ENST00000372228.3,ENST00000423007.1,ENST00000341012.7	chr9	134381789:134381840:134382754:134382901:134384297:134384409,	134382755	134382901	134382872	134382872	Frame_Shift_Del	C	-	p.A133fs
LIHC	TCGA-DD-A39Y-01	POMT1	ENST00000354713.4	chr9	134381789:134381840:134382737:134382901:134384297:134384409,	134382738	134382901	134382872	134382872	Frame_Shift_Del	C	-	p.A133fs
LIHC	TCGA-DD-A39Y-01	SETX	ENST00000224140.5,ENST00000372169.2,ENST00000436441.1	chr9	135145001:135145089:135147096:135147195:135150642:135150769,	135147097	135147195	135147148	135147148	Frame_Shift_Del	T	-	p.D2383fs
LIHC	TCGA-DD-A39Y-01	SETX	ENST00000224140.5,ENST00000372169.2,ENST00000436441.1	chr9	135147096:135147195:135150642:135150807:135152446:135152539,	135150643	135150807	135150692	135150692	Frame_Shift_Del	G	-	p.Q2351fs
LIHC	TCGA-DD-A39Y-01	SETX	ENST00000224140.5,ENST00000372169.2,ENST00000436441.1	chr9	135147096:135147195:135150642:135150807:135152446:135152539,	135150643	135150807	135150739	135150739	Frame_Shift_Del	T	-	p.K2335fs
LIHC	TCGA-DD-A39Y-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2,ENST00000436441.1	chr9	135173466:135173699:135176016:135176190:135187143:135187243,	135176017	135176190	135176096	135176096	Frame_Shift_Del	T	-	p.K1823fs
LIHC	TCGA-DD-A39Y-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203232	135203232	Frame_Shift_Del	T	-	p.K1251fs
LIHC	TCGA-DD-A39Y-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203565	135203565	Frame_Shift_Del	T	-	p.E1140fs
LIHC	TCGA-DD-A39Y-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135205006	135205006	Frame_Shift_Del	G	-	p.A660fs
LIHC	TCGA-DD-A39Y-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135209994:135210114:135211682:135211902:135218076:135218186,	135211683	135211902	135211807	135211807	Frame_Shift_Del	T	-	p.K198fs
LIHC	TCGA-DD-A39Y-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135766736:135772141:135772570:135772732:135772809:135772997,	135772571	135772732	135772615	135772615	Frame_Shift_Del	T	-	p.K977fs
LIHC	TCGA-DD-A39Y-01	GTF3C5	ENST00000372099.6,ENST00000372097.5	chr9	135929794:135929875:135930098:135930196:135931398:135931481,	135930099	135930196	135930148	135930148	Frame_Shift_Del	G	-	p.S373fs
LIHC	TCGA-DD-A39Y-01	SLC2A6	ENST00000371899.4,ENST00000432868.1	chr9	136342156:136342363:136343375:136343538:136344089:136344197,	136343376	136343538	136343522	136343522	Frame_Shift_Del	T	-	p.R37fs
LIHC	TCGA-DD-A39Y-01	VAV2	ENST00000406606.3	chr9	136633563:136633718:136635499:136635623:136637080:136637168,	136635500	136635623	136635539	136635539	Frame_Shift_Del	G	-	p.R760fs
LIHC	TCGA-DD-A39Y-01	RXRA	ENST00000481739.1	chr9	137218425:137218505:137293477:137293728:137299994:137300145,	137293478	137293728	137293616	137293616	Frame_Shift_Del	C	-	p.S56fs
LIHC	TCGA-DD-A39Y-01	PAEP	ENST00000371768.3	chr9	138454665:138454739:138456089:138456200:138457255:138457360,138454665:138454739:138456089:138456200:138457259:138457360,	138456090	138456200	138456155	138456155	Frame_Shift_Del	C	-	p.Q126fs
LIHC	TCGA-DD-A39Y-01	SOHLH1	ENST00000298466.5,ENST00000425225.1	chr9	138586232:138586303:138586895:138587109:138588457:138588651,	138586896	138587109	138587082	138587082	Frame_Shift_Del	G	-	p.P230fs
LIHC	TCGA-DD-A39Y-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1,ENST00000313084.5,ENST00000277537.6	chr9	139342020:139342132:139342304:139342361:139342535:139342613,	139342305	139342361	139342331	139342331	Frame_Shift_Del	C	-	p.V2141fs
LIHC	TCGA-DD-A39Y-01	NOTCH1	ENST00000277541.6	chr9	139410432:139410546:139411723:139411837:139412203:139412389,	139411724	139411837	139411752	139411752	Frame_Shift_Del	G	-	p.I509fs
LIHC	TCGA-DD-A39Y-01	NOTCH1	ENST00000277541.6	chr9	139412203:139412389:139412588:139412744:139413042:139413276,	139412589	139412744	139412672	139412672	Frame_Shift_Del	G	-	p.P391fs
LIHC	TCGA-DD-A39Y-01	LCN15	ENST00000316144.5,ENST00000482511.1	chr9	139656238:139656305:139656639:139656741:139657808:139657919,	139656640	139656741	139656646	139656646	Frame_Shift_Del	G	-	p.Q172fs
LIHC	TCGA-DD-A39Y-01	LCN15	ENST00000316144.5,ENST00000482511.1	chr9	139656238:139656305:139656639:139656741:139657808:139657919,	139656640	139656741	139656718	139656718	Frame_Shift_Del	G	-	p.Q148fs
LIHC	TCGA-DD-A39Y-01	MAMDC4	ENST00000317446.2,ENST00000485732.1,ENST00000445819.1	chr9	139749388:139749562:139749705:139749790:139749882:139750071,	139749706	139749790	139749732	139749732	Frame_Shift_Del	G	-	p.P408fs
LIHC	TCGA-DD-A39Y-01	MAMDC4	ENST00000445819.1	chr9	139750708:139750833:139750915:139751027:139751161:139751278,	139750916	139751027	139750967	139750967	Frame_Shift_Del	G	-	p.G633fs
LIHC	TCGA-DD-A39Y-01	NDOR1	ENST00000344894.5,ENST00000427047.2,ENST00000371521.4	chr9	140109571:140109654:140109858:140109973:140110110:140110257,	140109859	140109973	140109876	140109876	Frame_Shift_Del	G	-	p.L397fs
LIHC	TCGA-DD-A39Y-01	EXD3	ENST00000487745.1,ENST00000342129.4,ENST00000340951.4,ENST00000491734.2	chr9	140218176:140218308:140218541:140218595:140242522:140242603,	140218542	140218595	140218557	140218557	Frame_Shift_Del	C	-	p.G679fs
LIHC	TCGA-DD-A39Y-01	CACNA1B	ENST00000277551.2,ENST00000371357.1,ENST00000371363.1,ENST00000371372.1,ENST00000277549.5,ENST00000371355.4	chr9	140972565:140972710:140990935:140991063:140997162:140997259,	140990936	140991063	140990953	140990953	Frame_Shift_Del	G	-	p.V898fs
LIHC	TCGA-DD-A39Y-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890957	890957	Frame_Shift_Del	G	-	p.R157fs
LIHC	TCGA-DD-A39Y-01	WDR37	ENST00000381329.1,ENST00000263150.4,ENST00000358220.1	chr10	1118055:1118233:1123846:1123943:1125950:1126046,	1123847	1123943	1123853	1123853	Frame_Shift_Del	A	-	p.K49fs
LIHC	TCGA-DD-A39Y-01	AKR1E2	ENST00000298375.7,ENST00000532248.1,ENST00000334019.4,ENST00000474119.1,ENST00000462718.3,ENST00000533295.1,ENST00000345253.5,ENST00000463345.1	chr10	4872876:4873034:4875541:4875658:4877866:4878001,	4875542	4875658	4875556	4875556	Frame_Shift_Del	C	-	p.C74fs
LIHC	TCGA-DD-A39Y-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000602997.1,ENST00000605781.1,ENST00000380554.3	chr10	5138601:5138769:5139625:5139742:5140993:5141071,	5139626	5139742	5139685	5139685	Frame_Shift_Del	G	-	p.K105fs
LIHC	TCGA-DD-A39Y-01	FAM208B	ENST00000328090.5	chr10	5765639:5765740:5766392:5766496:5768847:5768920,	5766393	5766496	5766397	5766397	Frame_Shift_Del	T	-	p.C84fs
LIHC	TCGA-DD-A39Y-01	GDI2	ENST00000380181.3	chr10	5836870:5836982:5838725:5838825:5842560:5842668,5827968:5828013:5838725:5838825:5842560:5842668,	5838726	5838825	5838807	5838807	Frame_Shift_Del	T	-	p.I58fs
LIHC	TCGA-DD-A39Y-01	GDI2	ENST00000380132.4,ENST00000609712.1	chr10	5842560:5842668:5853836:5853919:5855176:5855350,	5853837	5853919	5853860	5853860	Frame_Shift_Del	A	-	p.Y12fs
LIHC	TCGA-DD-A39Y-01	GDI2	ENST00000380132.4,ENST00000609712.1	chr10	5842560:5842668:5853836:5853919:5855176:5855350,	5853837	5853919	5853873	5853873	Frame_Shift_Del	T	-	p.K7fs
LIHC	TCGA-DD-A39Y-01	IL15RA	ENST00000379972.2	chr10	6005705:6005804:6008107:6008302:6019739:6019798,6005705:6005804:6008107:6008302:6019367:6019455,6002357:6002530:6008107:6008302:6019367:6019455,6002357:6002530:6008107:6008302:6019739:6019798,6002329:6002431:6008107:6008302:6019739:6019798,	6008108	6008302	6008124	6008124	Frame_Shift_Del	G	-	p.P53fs
LIHC	TCGA-DD-A39Y-01	ITIH5	ENST00000446830.2,ENST00000298441.6,ENST00000256861.6	chr10	7605078:7605347:7607992:7608370:7611630:7611747,	7607993	7608370	7608076	7608076	Frame_Shift_Del	T	-	p.K815fs
LIHC	TCGA-DD-A39Y-01	ITIH2	ENST00000429820.1,ENST00000473227.1,ENST00000358415.4	chr10	7749163:7749196:7750984:7751154:7755143:7755226,	7750985	7751154	7751085	7751085	Frame_Shift_Del	C	-	p.S98fs
LIHC	TCGA-DD-A39Y-01	PROSER2	ENST00000277570.5	chr10	11893995:11894214:11908529:11908782:11911488:11914276,	11908530	11908782	11908581	11908581	Frame_Shift_Del	T	-	p.F65fs
LIHC	TCGA-DD-A39Y-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12009339:12009453:12021055:12021164:12039670:12039756,	12021056	12021164	12021088	12021088	Frame_Shift_Del	A	-	p.C641fs
LIHC	TCGA-DD-A39Y-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12009339:12009453:12021055:12021164:12039670:12039756,	12021056	12021164	12021145	12021145	Frame_Shift_Del	A	-	p.Y622fs
LIHC	TCGA-DD-A39Y-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12046528:12046726:12056022:12056183:12070743:12071523,	12056023	12056183	12056070	12056070	Frame_Shift_Del	A	-	p.L420fs
LIHC	TCGA-DD-A39Y-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12070875	12070875	Frame_Shift_Del	A	-	p.F338fs
LIHC	TCGA-DD-A39Y-01	DHTKD1	ENST00000263035.4	chr10	12123522:12123626:12126538:12126750:12129533:12129728,	12126539	12126750	12126717	12126717	Frame_Shift_Del	A	-	p.R163fs
LIHC	TCGA-DD-A39Y-01	DHTKD1	ENST00000263035.4	chr10	12129533:12129728:12136071:12136270:12139682:12139957,12133511:12133683:12136071:12136270:12139682:12139957,	12136072	12136270	12136260	12136260	Frame_Shift_Del	A	-	p.K450fs
LIHC	TCGA-DD-A39Y-01	DHTKD1	ENST00000263035.4	chr10	12149907:12150014:12154898:12155063:12159671:12159754,	12154899	12155063	12154919	12154919	Frame_Shift_Del	G	-	p.E725fs
LIHC	TCGA-DD-A39Y-01	CDC123	ENST00000455773.3,ENST00000429258.2,ENST00000281141.4,ENST00000378900.2	chr10	12252288:12252321:12257738:12257834:12259359:12259466,	12257739	12257834	12257742	12257742	Frame_Shift_Del	C	-	p.P81fs
LIHC	TCGA-DD-A39Y-01	CDC123	ENST00000440613.1	chr10	12280455:12280484:12288147:12288276:12291579:12291705,12280455:12280484:12288147:12288276:12292309:12292358,	12288148	12288276	12288249	12288249	Frame_Shift_Del	T	-	p.D273fs
LIHC	TCGA-DD-A39Y-01	CDC123	ENST00000281141.4,ENST00000498747.1,ENST00000378900.2	chr10	12288147:12288276:12291579:12291717:12292309:12292358,	12291580	12291717	12291584	12291584	Frame_Shift_Del	C	-	p.S284fs
LIHC	TCGA-DD-A39Y-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13165994:13166110:13167417:13167567:13167945:13168039,	13167418	13167567	13167564	13167564	Frame_Shift_Del	A	-	p.E382fs
LIHC	TCGA-DD-A39Y-01	BEND7	ENST00000396898.2,ENST00000396900.2,ENST00000341083.3,ENST00000378605.3	chr10	13494538:13494658:13522898:13523124:13534610:13534826,	13522899	13523124	13523020	13523020	Frame_Shift_Del	T	-	p.K262fs
LIHC	TCGA-DD-A39Y-01	BEND7	ENST00000396900.2,ENST00000466271.1	chr10	13538787:13538888:13541777:13542080:13568137:13568221,	13541778	13542080	13542056	13542056	Frame_Shift_Del	T	-	p.K5fs
LIHC	TCGA-DD-A39Y-01	BEND7	ENST00000396898.2	chr10	13538787:13538888:13541738:13542080:13568137:13568221,	13541739	13542080	13542056	13542056	Frame_Shift_Del	T	-	p.K5fs
LIHC	TCGA-DD-A39Y-01	FRMD4A	ENST00000358621.4,ENST00000357447.2	chr10	13688333:13689035:13693902:13693974:13696415:13696512,	13693903	13693974	13693960	13693960	Frame_Shift_Del	T	-	p.N1022fs
LIHC	TCGA-DD-A39Y-01	MEIG1	ENST00000407572.1	chr10	15001508:15001556:15008438:15008605:15014511:15014680,	15008439	15008605	15008510	15008510	Frame_Shift_Del	A	-	p.K16fs
LIHC	TCGA-DD-A39Y-01	PTER	ENST00000423462.2	chr10	16479361:16479489:16526335:16526815:16528350:16528616,16478982:16479046:16526335:16526815:16528350:16528616,	16526336	16526815	16526415	16526415	Frame_Shift_Del	T	-	p.V11fs
LIHC	TCGA-DD-A39Y-01	CUBN	ENST00000377833.4	chr10	16882883:16883046:16893233:16893442:16911634:16911852,	16893234	16893442	16893370	16893370	Frame_Shift_Del	T	-	p.N3176fs
LIHC	TCGA-DD-A39Y-01	TRDMT1	ENST00000424636.2,ENST00000358282.7	chr10	17202303:17202373:17203481:17203547:17210839:17210916,17202303:17202373:17203481:17203547:17204164:17204236,17202303:17202373:17203481:17203547:17216549:17216659,	17203482	17203547	17203499	17203499	Frame_Shift_Del	A	-	p.F124fs
LIHC	TCGA-DD-A39Y-01	STAM	ENST00000540523.1	chr10	17686263:17686378:17702462:17702547:17730025:17730156,	17702463	17702547	17702508	17702508	Frame_Shift_Del	T	-	p.I29fs
LIHC	TCGA-DD-A39Y-01	TMEM236	ENST00000338221.5	chr10	17794259:17794551:17813307:17813380:17818027:17818169,	17813308	17813380	17813360	17813360	Frame_Shift_Del	T	-	p.F104fs
LIHC	TCGA-DD-A39Y-01	CACNB2	ENST00000377331.2,ENST00000352115.6	chr10	18795399:18795476:18803908:18803970:18807264:18807345,	18803909	18803970	18803941	18803941	Frame_Shift_Del	A	-	p.K235fs
LIHC	TCGA-DD-A39Y-01	NSUN6	ENST00000377304.4	chr10	18885136:18885256:18898773:18898855:18903388:18903542,	18898774	18898855	18898847	18898847	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-DD-A39Y-01	MLLT10	ENST00000377072.3,ENST00000476557.1,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21846549:21846753:21875222:21875277:21884259:21884307,21827761:21827841:21875222:21875277:21884259:21884307,	21875223	21875277	21875238	21875238	Frame_Shift_Del	C	-	p.P86fs
LIHC	TCGA-DD-A39Y-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21903759:21903853:21906040:21906136:21940601:21940697,	21906041	21906136	21906131	21906131	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-DD-A39Y-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	22016784:22016857:22019828:22019983:22021827:22022016,	22019829	22019983	22019921	22019921	Frame_Shift_Del	T	-	p.L736fs
LIHC	TCGA-DD-A39Y-01	MLLT10	ENST00000307729.7	chr10	22024067:22024164:22028958:22029165:22030867:22032554,	22028959	22029165	22028974	22028974	Frame_Shift_Del	T	-	p.F991fs
LIHC	TCGA-DD-A39Y-01	DNAJC1	ENST00000376980.3	chr10	22171210:22171368:22193450:22193541:22207707:22207801,	22193451	22193541	22193508	22193508	Frame_Shift_Del	T	-	p.T255fs
LIHC	TCGA-DD-A39Y-01	ARMC3	ENST00000468003.1	chr10	23247998:23248067:23248327:23248503:23257234:23257418,	23248328	23248503	23248414	23248414	Frame_Shift_Del	G	-	p.G151fs
LIHC	TCGA-DD-A39Y-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24825702:24825822:24831621:24831699:24833909:24834032,24825702:24825822:24831621:24831699:24831811:24832637,	24831622	24831699	24831665	24831665	Frame_Shift_Del	A	-	p.E876fs
LIHC	TCGA-DD-A39Y-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24833333	24833333	Frame_Shift_Del	C	-	p.P1395fs
LIHC	TCGA-DD-A39Y-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24908895	24908895	Frame_Shift_Del	A	-	p.F643fs
LIHC	TCGA-DD-A39Y-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909027	24909027	Frame_Shift_Del	A	-	p.F599fs
LIHC	TCGA-DD-A39Y-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909311	24909311	Frame_Shift_Del	T	-	p.T505fs
LIHC	TCGA-DD-A39Y-01	MYO3A	ENST00000265944.5,ENST00000376302.1,ENST00000543632.1	chr10	26224716:26224759:26241022:26241207:26243802:26243937,	26241023	26241207	26241101	26241101	Frame_Shift_Del	G	-	p.W21fs
LIHC	TCGA-DD-A39Y-01	MYO3A	ENST00000265944.5,ENST00000376302.1,ENST00000543632.1	chr10	26224716:26224759:26241022:26241207:26243802:26243937,	26241023	26241207	26241163	26241163	Frame_Shift_Del	A	-	p.K42fs
LIHC	TCGA-DD-A39Y-01	APBB1IP	ENST00000376236.4	chr10	26800675:26800835:26802467:26802589:26822367:26822454,	26802468	26802589	26802489	26802489	Frame_Shift_Del	A	-	p.E238fs
LIHC	TCGA-DD-A39Y-01	ABI1	ENST00000536334.1,ENST00000490841.2	chr10	27037498:27037674:27040526:27040712:27054146:27054247,	27040527	27040712	27040546	27040546	Frame_Shift_Del	G	-	p.P445fs
LIHC	TCGA-DD-A39Y-01	ABI1	ENST00000536334.1,ENST00000490841.2	chr10	27037498:27037674:27040526:27040712:27054146:27054247,	27040527	27040712	27040688	27040688	Frame_Shift_Del	G	-	p.P402fs
LIHC	TCGA-DD-A39Y-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27295845:27295891:27301810:27302039:27303422:27303608,	27301811	27302039	27302003	27302003	Frame_Shift_Del	A	-	p.L1588fs
LIHC	TCGA-DD-A39Y-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27301810:27302039:27303422:27303640:27306430:27306721,	27303423	27303640	27303455	27303455	Frame_Shift_Del	T	-	p.K1564fs
LIHC	TCGA-DD-A39Y-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27303422:27303640:27306430:27306721:27311486:27311616,	27306431	27306721	27306435	27306435	Frame_Shift_Del	A	-	p.L1501fs
LIHC	TCGA-DD-A39Y-01	MASTL	ENST00000375946.4	chr10	27458872:27460012:27462049:27462188:27470408:27470510,27458872:27460012:27462049:27462188:27469881:27469995,	27462050	27462188	27462183	27462183	Frame_Shift_Del	C	-	p.A753fs
LIHC	TCGA-DD-A39Y-01	MASTL	ENST00000375940.4	chr10	27458872:27460012:27462046:27462188:27475307:27475647,27458872:27460012:27462046:27462188:27469881:27469995,	27462047	27462188	27462183	27462183	Frame_Shift_Del	C	-	p.A753fs
LIHC	TCGA-DD-A39Y-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375897.3,ENST00000375888.1	chr10	27494126:27494177:27497174:27497374:27499742:27500010,	27497175	27497374	27497326	27497326	Frame_Shift_Del	C	-	p.G418fs
LIHC	TCGA-DD-A39Y-01	ACBD5	ENST00000476758.1,ENST00000375905.4,ENST00000375901.1,ENST00000396271.3,ENST00000375888.1	chr10	27504463:27504570:27506908:27507112:27508651:27508732,	27506909	27507112	27506961	27506961	Frame_Shift_Del	G	-	p.P259fs
LIHC	TCGA-DD-A39Y-01	WAC	ENST00000442148.1,ENST00000424454.1,ENST00000375664.4,ENST00000354911.4,ENST00000375646.1,ENST00000428935.1,ENST00000347934.4,ENST00000420266.1,ENST00000345541.6,ENST00000414108.1,ENST00000439676.1	chr10	28824614:28824686:28872327:28872434:28878664:28878780,	28872328	28872434	28872349	28872349	Frame_Shift_Del	A	-	p.E54fs
LIHC	TCGA-DD-A39Y-01	ARHGAP12	ENST00000396144.4,ENST00000375245.4,ENST00000344936.2,ENST00000492028.1,ENST00000375250.5,ENST00000311380.4	chr10	32097921:32098056:32098157:32098235:32099576:32099675,	32098158	32098235	32098180	32098180	Frame_Shift_Del	T	-	p.K672fs
LIHC	TCGA-DD-A39Y-01	ARHGAP12	ENST00000396144.4,ENST00000344936.2,ENST00000375250.5	chr10	32141444:32141525:32150322:32150586:32197099:32197802,32142993:32143134:32150322:32150586:32197099:32197802,	32150323	32150586	32150541	32150541	Frame_Shift_Del	C	-	p.A244fs
LIHC	TCGA-DD-A39Y-01	EPC1	ENST00000263062.8,ENST00000319778.6,ENST00000375110.2	chr10	32580090:32580250:32581423:32581572:32581915:32582122,	32581424	32581572	32581482	32581482	Frame_Shift_Del	T	-	p.R254fs
LIHC	TCGA-DD-A39Y-01	CCDC7	ENST00000277657.6,ENST00000362006.5	chr10	32762894:32762951:32780849:32780925:32806872:32806903,	32780850	32780925	32780897	32780897	Frame_Shift_Del	T	-	p.F282fs
LIHC	TCGA-DD-A39Y-01	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33200813:33201052:33208812:33209012:33209172:33209313,	33208813	33209012	33208923	33208923	Frame_Shift_Del	T	-	p.E453fs
LIHC	TCGA-DD-A39Y-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000265371.4	chr10	33545243:33545399:33552573:33552801:33559602:33559784,	33552574	33552801	33552734	33552734	Frame_Shift_Del	T	-	p.K166fs
LIHC	TCGA-DD-A39Y-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000265371.4	chr10	33552573:33552801:33559602:33559784:33619635:33619810,	33559603	33559784	33559707	33559707	Frame_Shift_Del	G	-	p.P111fs
LIHC	TCGA-DD-A39Y-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000544292.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34671467:34671850:34673056:34673182:34688257:34688341,	34673057	34673182	34673119	34673119	Frame_Shift_Del	A	-	p.F318fs
LIHC	TCGA-DD-A39Y-01	CCNY	ENST00000339497.5,ENST00000374706.1,ENST00000265375.9,ENST00000374704.4	chr10	35841946:35842113:35854950:35855113:35857981:35860840,	35854951	35855113	35855072	35855072	Frame_Shift_Del	C	-	p.P290fs
LIHC	TCGA-DD-A39Y-01	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000361713.1	chr10	37422843:37422981:37425534:37425599:37430645:37431218,	37425535	37425599	37425575	37425575	Frame_Shift_Del	A	-	p.K210fs
LIHC	TCGA-DD-A39Y-01	RET	ENST00000340058.5,ENST00000355710.3	chr10	43595906:43596170:43597789:43598077:43600399:43600641,	43597790	43598077	43597936	43597936	Frame_Shift_Del	C	-	p.P162fs
LIHC	TCGA-DD-A39Y-01	CSGALNACT2	ENST00000374466.3	chr10	43655941:43656043:43659313:43659492:43662451:43662546,	43659314	43659492	43659386	43659386	Frame_Shift_Del	G	-	p.V351fs
LIHC	TCGA-DD-A39Y-01	ALOX5	ENST00000374391.2,ENST00000542434.1	chr10	45891302:45891384:45907638:45907761:45919488:45919595,	45907639	45907761	45907739	45907739	Frame_Shift_Del	T	-	p.F178fs
LIHC	TCGA-DD-A39Y-01	ALOX5	ENST00000374391.2,ENST00000542434.1	chr10	45924065:45924212:45935877:45936081:45936791:45936878,	45935878	45936081	45936029	45936029	Frame_Shift_Del	T	-	p.V378fs
LIHC	TCGA-DD-A39Y-01	MARCH8	ENST00000453424.2	chr10	45956834:45956859:45958598:45959444:45959686:45959775,	45958599	45959444	45959080	45959080	Frame_Shift_Del	T	-	p.R203fs
LIHC	TCGA-DD-A39Y-01	MARCH8	ENST00000453424.2	chr10	45956834:45956859:45958598:45959444:45959686:45959775,	45958599	45959444	45959096	45959096	Frame_Shift_Del	A	-	p.F197fs
LIHC	TCGA-DD-A39Y-01	MAPK8	ENST00000432379.1,ENST00000374176.4,ENST00000374174.1,ENST00000395611.3,ENST00000374182.3,ENST00000476134.1,ENST00000360332.3,ENST00000374179.3,ENST00000374189.1,ENST00000426557.1	chr10	49609654:49609825:49612894:49613024:49617921:49617980,	49612895	49613024	49612978	49612978	Frame_Shift_Del	G	-	p.R69fs
LIHC	TCGA-DD-A39Y-01	ARHGAP22	ENST00000417247.2,ENST00000249601.4,ENST00000417912.2,ENST00000374172.1,ENST00000435790.2,ENST00000374170.1,ENST00000460425.1	chr10	49654600:49654662:49658303:49659183:49661346:49661468,	49658304	49659183	49659175	49659175	Frame_Shift_Del	G	-	p.L333fs
LIHC	TCGA-DD-A39Y-01	VSTM4	ENST00000332853.4	chr10	50285263:50285371:50293999:50294068:50315638:50316040,	50294000	50294068	50294063	50294063	Frame_Shift_Del	A	-	p.S155fs
LIHC	TCGA-DD-A39Y-01	PARG	ENST00000402038.3	chr10	51073366:51073427:51077521:51077601:51087718:51087876,	51077522	51077601	51077558	51077558	Frame_Shift_Del	T	-	p.T193fs
LIHC	TCGA-DD-A39Y-01	PARG	ENST00000402038.3	chr10	51073366:51073427:51077521:51077601:51087718:51087876,	51077522	51077601	51077574	51077574	Frame_Shift_Del	T	-	p.K187fs
LIHC	TCGA-DD-A39Y-01	SGMS1	ENST00000361781.2	chr10	52087037:52087082:52103251:52104105:52193235:52193316,	52103252	52104105	52103593	52103593	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A39Y-01	BICC1	ENST00000373886.3	chr10	60548129:60548183:60549021:60549216:60549441:60549693,	60549022	60549216	60549095	60549095	Frame_Shift_Del	C	-	p.S225fs
LIHC	TCGA-DD-A39Y-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61414017	61414017	Frame_Shift_Del	T	-	p.N256fs
LIHC	TCGA-DD-A39Y-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829290	61829290	Frame_Shift_Del	T	-	p.K3783fs
LIHC	TCGA-DD-A39Y-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829527	61829527	Frame_Shift_Del	T	-	p.K3704fs
LIHC	TCGA-DD-A39Y-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829988	61829988	Frame_Shift_Del	C	-	p.D3552fs
LIHC	TCGA-DD-A39Y-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831249	61831249	Frame_Shift_Del	C	-	p.G3130fs
LIHC	TCGA-DD-A39Y-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832038	61832038	Frame_Shift_Del	T	-	p.K2867fs
LIHC	TCGA-DD-A39Y-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832206	61832206	Frame_Shift_Del	T	-	p.K2811fs
LIHC	TCGA-DD-A39Y-01	CDK1	ENST00000395284.3,ENST00000519078.2	chr10	62545428:62545545:62547817:62547988:62551647:62551727,	62547818	62547988	62547906	62547906	Frame_Shift_Del	T	-	p.I136fs
LIHC	TCGA-DD-A39Y-01	CDK1	ENST00000395284.3,ENST00000519078.2	chr10	62545428:62545545:62547817:62547988:62551647:62551727,	62547818	62547988	62547943	62547943	Frame_Shift_Del	C	-	p.G148fs
LIHC	TCGA-DD-A39Y-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62647969:62648943:62652567:62652753:62670644:62670748,	62652568	62652753	62652662	62652662	Frame_Shift_Del	A	-	p.C130fs
LIHC	TCGA-DD-A39Y-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022524	64022524	Frame_Shift_Del	C	-	p.W39fs
LIHC	TCGA-DD-A39Y-01	RUFY2	ENST00000388768.2,ENST00000466493.1,ENST00000602465.1	chr10	70137931:70138427:70139180:70139278:70140988:70141013,70136609:70136729:70139180:70139278:70140988:70141013,	70139181	70139278	70139212	70139212	Frame_Shift_Del	T	-	p.I427fs
LIHC	TCGA-DD-A39Y-01	RUFY2	ENST00000388768.2,ENST00000466493.1,ENST00000602465.1	chr10	70137931:70138427:70139180:70139278:70140988:70141013,70136609:70136729:70139180:70139278:70140988:70141013,	70139181	70139278	70139221	70139221	Frame_Shift_Del	T	-	p.T424fs
LIHC	TCGA-DD-A39Y-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644469	70644469	Frame_Shift_Del	A	-	p.E306fs
LIHC	TCGA-DD-A39Y-01	DDX50	ENST00000471475.1,ENST00000373585.3,ENST00000483593.1	chr10	70670062:70670138:70670823:70671002:70672917:70672986,	70670824	70671002	70670942	70670942	Frame_Shift_Del	C	-	p.I193fs
LIHC	TCGA-DD-A39Y-01	DDX50	ENST00000373585.3,ENST00000460470.1	chr10	70673182:70673332:70673814:70673960:70679587:70679737,	70673815	70673960	70673938	70673938	Frame_Shift_Del	A	-	p.Q356fs
LIHC	TCGA-DD-A39Y-01	DDX50	ENST00000373585.3	chr10	70679609:70679737:70693954:70694116:70694554:70694639,	70693955	70694116	70693973	70693973	Frame_Shift_Del	G	-	p.G420fs
LIHC	TCGA-DD-A39Y-01	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000467852.1,ENST00000489656.1,ENST00000373382.1,ENST00000263559.6	chr10	70922161:70922268:70925797:70925866:70928244:70928288,	70925798	70925866	70925840	70925840	Frame_Shift_Del	A	-	p.E234fs
LIHC	TCGA-DD-A39Y-01	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000373382.1,ENST00000263559.6	chr10	70925797:70925866:70928244:70928387:70930911:70931016,	70928245	70928387	70928313	70928313	Frame_Shift_Del	A	-	p.K267fs
LIHC	TCGA-DD-A39Y-01	TSPAN15	ENST00000459981.1,ENST00000373290.2,ENST00000486093.1,ENST00000490083.1	chr10	71264197:71264241:71265879:71265996:71266584:71266612,	71265880	71265996	71265911	71265911	Frame_Shift_Del	G	-	p.R217fs
LIHC	TCGA-DD-A39Y-01	COL13A1	ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398968.3,ENST00000398973.3,ENST00000398972.3	chr10	71637794:71637821:71640258:71640309:71647211:71647247,71631939:71631966:71640258:71640309:71647211:71647247,71634883:71634919:71640258:71640309:71647211:71647247,	71640259	71640309	71640303	71640303	Frame_Shift_Del	C	-	p.G160fs
LIHC	TCGA-DD-A39Y-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000456019.1,ENST00000398975.2,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000398972.3	chr10	71707062:71707098:71712637:71712724:71716759:71716798,	71712638	71712724	71712718	71712718	Frame_Shift_Del	C	-	p.C702fs
LIHC	TCGA-DD-A39Y-01	CDH23	ENST00000398809.4,ENST00000299366.7,ENST00000461841.3,ENST00000398842.3	chr10	73270876:73270969:73326498:73326693:73330546:73330675,	73326499	73326693	73326586	73326586	Frame_Shift_Del	C	-	p.P179fs
LIHC	TCGA-DD-A39Y-01	CDH23	ENST00000224721.6,ENST00000466757.3,ENST00000299366.7,ENST00000442677.2	chr10	73439143:73439249:73442201:73442329:73447403:73447476,	73442202	73442329	73442218	73442218	Frame_Shift_Del	C	-	p.R630fs
LIHC	TCGA-DD-A39Y-01	ASCC1	ENST00000530394.1	chr10	73857011:73857208:73862091:73862170:73862607:73862725,73857011:73857208:73862091:73862170:73887839:73887925,	73862092	73862170	73862140	73862140	Frame_Shift_Del	G	-	p.P397fs
LIHC	TCGA-DD-A39Y-01	ASCC1	ENST00000342444.4,ENST00000317168.6,ENST00000317126.4,ENST00000394919.1,ENST00000530394.1,ENST00000486689.2,ENST00000394915.3,ENST00000545550.1	chr10	73892814:73892939:73912626:73912746:73921295:73921314,	73912627	73912746	73912653	73912653	Frame_Shift_Del	T	-	p.K268fs
LIHC	TCGA-DD-A39Y-01	FAM149B1	ENST00000445951.1,ENST00000242505.6,ENST00000372955.3	chr10	74968454:74968544:74970008:74970196:74987817:74987918,	74970009	74970196	74970061	74970061	Frame_Shift_Del	T	-	p.L255fs
LIHC	TCGA-DD-A39Y-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525560	75525560	Frame_Shift_Del	C	-	p.P458fs
LIHC	TCGA-DD-A39Y-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R184fs
LIHC	TCGA-DD-A39Y-01	ADK	ENST00000541550.1,ENST00000286621.2,ENST00000372734.3,ENST00000539909.1	chr10	76349039:76349075:76360136:76360251:76429940:76430027,	76360137	76360251	76360161	76360161	Frame_Shift_Del	A	-	p.K247fs
LIHC	TCGA-DD-A39Y-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76729777:76729859:76732264:76732397:76735156:76735212,	76732265	76732397	76732308	76732308	Frame_Shift_Del	A	-	p.R324fs
LIHC	TCGA-DD-A39Y-01	DUSP13	ENST00000372702.3,ENST00000491677.2	chr10	76863750:76863855:76865418:76865626:76868766:76868891,76863750:76863855:76865418:76865626:76867749:76867967,	76865419	76865626	76865423	76865423	Frame_Shift_Del	C	-	p.G28fs
LIHC	TCGA-DD-A39Y-01	VDAC2	ENST00000332211.6,ENST00000447677.1,ENST00000313132.4,ENST00000413289.1,ENST00000298468.5,ENST00000344036.4,ENST00000481876.1,ENST00000543351.1	chr10	76971987:76972056:76973778:76973828:76977645:76977749,76971987:76972056:76973778:76973828:76978820:76978954,	76973779	76973828	76973805	76973805	Frame_Shift_Del	A	-	p.K43fs
LIHC	TCGA-DD-A39Y-01	KCNMA1	ENST00000406533.3,ENST00000372408.2,ENST00000372421.5,ENST00000354353.5,ENST00000372443.1,ENST00000286627.5,ENST00000286628.8,ENST00000372440.1,ENST00000457953.1,ENST00000372437.1,ENST00000372403.4,ENST00000434208.1,ENST00000404771.3,ENST00000604624.1,ENST00000404857.1	chr10	78674693:78674807:78704530:78704723:78708899:78709124,	78704531	78704723	78704693	78704693	Frame_Shift_Del	C	-	p.A856fs
LIHC	TCGA-DD-A39Y-01	DLG5	ENST00000475613.2,ENST00000372388.2,ENST00000424842.1,ENST00000372391.2,ENST00000463362.1,ENST00000459739.1	chr10	79556208:79556352:79565422:79565619:79566515:79566686,	79565423	79565619	79565520	79565520	Frame_Shift_Del	A	-	p.F1689fs
LIHC	TCGA-DD-A39Y-01	SFTPA2	ENST00000372327.5	chr10	81318641:81318761:81319067:81319262:81319724:81319754,81318641:81318761:81319067:81319262:81320119:81320151,	81319068	81319262	81319212	81319212	Frame_Shift_Del	G	-	p.L10fs
LIHC	TCGA-DD-A39Y-01	ANXA11	ENST00000372231.3,ENST00000535999.1,ENST00000438331.1,ENST00000422982.3,ENST00000360615.4,ENST00000537102.1,ENST00000265447.4	chr10	81926981:81927069:81928724:81929114:81930555:81930671,	81928725	81929114	81928910	81928910	Frame_Shift_Del	C	-	p.A126fs
LIHC	TCGA-DD-A39Y-01	CCSER2	ENST00000494586.1,ENST00000543283.1,ENST00000493409.1,ENST00000224756.8,ENST00000372088.2	chr10	86185486:86185649:86198267:86198463:86223688:86223701,	86198268	86198463	86198424	86198424	Frame_Shift_Del	A	-	p.V675fs
LIHC	TCGA-DD-A39Y-01	LDB3	ENST00000372056.4,ENST00000429277.2	chr10	88439838:88439914:88441192:88441560:88451652:88451822,88439838:88439914:88441192:88441560:88445434:88445457,88439838:88439914:88441192:88441560:88446825:88447029,	88441193	88441560	88441462	88441462	Frame_Shift_Del	C	-	p.N197fs
LIHC	TCGA-DD-A39Y-01	LDB3	ENST00000372056.4,ENST00000429277.2	chr10	88439838:88439914:88441192:88441560:88451652:88451822,88439838:88439914:88441192:88441560:88445434:88445457,88439838:88439914:88441192:88441560:88446825:88447029,	88441193	88441560	88441488	88441488	Frame_Shift_Del	C	-	p.T206fs
LIHC	TCGA-DD-A39Y-01	BMPR1A	ENST00000372037.3	chr10	88635623:88635842:88649818:88649981:88651883:88651986,	88649819	88649981	88649922	88649922	Frame_Shift_Del	T	-	p.P57fs
LIHC	TCGA-DD-A39Y-01	MMRN2	ENST00000372027.5	chr10	88695296:88696882:88702073:88703885:88704018:88704192,	88702074	88703885	88703322	88703322	Frame_Shift_Del	G	-	p.R407fs
LIHC	TCGA-DD-A39Y-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88819917:88819998:88820444:88820582:88820671:88820809,	88820445	88820582	88820544	88820544	Frame_Shift_Del	G	-	p.P366fs
LIHC	TCGA-DD-A39Y-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88820709:88820809:88822412:88822592:88827819:88827914,	88822413	88822592	88822543	88822543	Frame_Shift_Del	C	-	p.G264fs
LIHC	TCGA-DD-A39Y-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88827819:88827914:88834307:88834371:88835724:88835780,	88834308	88834371	88834319	88834319	Frame_Shift_Del	T	-	p.K212fs
LIHC	TCGA-DD-A39Y-01	ATAD1	ENST00000328142.3,ENST00000541004.1,ENST00000308448.7	chr10	89527429:89527480:89536077:89536184:89544226:89544427,89530708:89530798:89536077:89536184:89544226:89544427,	89536078	89536184	89536169	89536169	Frame_Shift_Del	T	-	p.N200fs
LIHC	TCGA-DD-A39Y-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690834	89690834	Frame_Shift_Del	T	-	p.F81fs
LIHC	TCGA-DD-A39Y-01	LIPF	ENST00000238983.4,ENST00000394375.3,ENST00000496797.1,ENST00000355843.2,ENST00000608620.1	chr10	90435342:90435414:90435965:90436037:90438201:90438271,	90435966	90436037	90436000	90436000	Frame_Shift_Del	G	-	p.W318fs
LIHC	TCGA-DD-A39Y-01	PANK1	ENST00000307534.4	chr10	91359008:91359262:91371452:91371805:91404356:91405215,	91371453	91371805	91371619	91371619	Frame_Shift_Del	T	-	p.N297fs
LIHC	TCGA-DD-A39Y-01	KIF20B	ENST00000416354.1,ENST00000260753.4,ENST00000394289.2,ENST00000371728.3	chr10	91477332:91477479:91478466:91478629:91479175:91479463,	91478467	91478629	91478521	91478521	Frame_Shift_Del	T	-	p.S442fs
LIHC	TCGA-DD-A39Y-01	KIF20B	ENST00000260753.4,ENST00000394289.2,ENST00000478929.1,ENST00000371728.3	chr10	91488884:91489004:91492659:91492813:91497143:91498374,	91492660	91492813	91492761	91492761	Frame_Shift_Del	A	-	p.R831fs
LIHC	TCGA-DD-A39Y-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93247438:93247535:93250956:93251064,	93247439	93247535	93247492	93247492	Frame_Shift_Del	T	-	p.I388fs
LIHC	TCGA-DD-A39Y-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93250956:93251064:93252108:93252241,93247438:93247535:93250956:93251064:93252108:93252241,	93250957	93251064	93251016	93251016	Frame_Shift_Del	A	-	p.L421fs
LIHC	TCGA-DD-A39Y-01	BTAF1	ENST00000265990.6,ENST00000544642.1	chr10	93757359:93757508:93767879:93768032:93768585:93768707,	93767880	93768032	93767988	93767988	Frame_Shift_Del	A	-	p.K1257fs
LIHC	TCGA-DD-A39Y-01	EXOC6	ENST00000443748.2,ENST00000260762.6,ENST00000371552.4,ENST00000371547.4	chr10	94733809:94733989:94757230:94757372:94773950:94774024,	94757231	94757372	94757329	94757329	Frame_Shift_Del	G	-	p.M679fs
LIHC	TCGA-DD-A39Y-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95134519:95134712:95137079:95137186:95139619:95139744,	95137080	95137186	95137144	95137144	Frame_Shift_Del	T	-	p.I682fs
LIHC	TCGA-DD-A39Y-01	TBC1D12	ENST00000225235.4	chr10	96271339:96271411:96281711:96281840:96282100:96282210,	96281712	96281840	96281817	96281817	Frame_Shift_Del	T	-	p.F624fs
LIHC	TCGA-DD-A39Y-01	HELLS	ENST00000394036.1	chr10	96317895:96317952:96322447:96322484:96331144:96331186,	96322448	96322484	96322451	96322451	Frame_Shift_Del	A	-	p.K113fs
LIHC	TCGA-DD-A39Y-01	HELLS	ENST00000394044.1,ENST00000348459.5,ENST00000239026.6,ENST00000371332.4,ENST00000419900.1,ENST00000394045.1	chr10	96322447:96322484:96322568:96322633:96331144:96331186,	96322569	96322633	96322627	96322627	Frame_Shift_Del	A	-	p.S143fs
LIHC	TCGA-DD-A39Y-01	CYP2C8	ENST00000490994.2,ENST00000533320.1,ENST00000479946.2,ENST00000526814.1,ENST00000525991.1,ENST00000539050.1,ENST00000371270.3,ENST00000527953.1,ENST00000527420.1,ENST00000535898.1	chr10	96802646:96802834:96805566:96805708:96818091:96818228,	96805567	96805708	96805692	96805692	Frame_Shift_Del	T	-	p.K279fs
LIHC	TCGA-DD-A39Y-01	SORBS1	ENST00000607232.1	chr10	97114638:97114724:97115383:97116862:97117387:97117534,	97115384	97116862	97116166	97116166	Frame_Shift_Del	T	-	p.K709fs
LIHC	TCGA-DD-A39Y-01	BLNK	ENST00000427367.2,ENST00000467799.2,ENST00000413476.2,ENST00000224337.5	chr10	97969593:97969663:97975076:97975145:97976408:97976490,	97975077	97975145	97975115	97975115	Frame_Shift_Del	T	-	p.N213fs
LIHC	TCGA-DD-A39Y-01	DNTT	ENST00000371174.2,ENST00000419175.1	chr10	98084022:98084146:98087224:98087357:98088481:98088587,	98087225	98087357	98087296	98087296	Frame_Shift_Del	A	-	p.K316fs
LIHC	TCGA-DD-A39Y-01	PIK3AP1	ENST00000371110.2,ENST00000371109.3,ENST00000467625.1,ENST00000339364.5	chr10	98355321:98355391:98362036:98362155:98363735:98363806,	98362037	98362155	98362109	98362109	Frame_Shift_Del	G	-	p.P763fs
LIHC	TCGA-DD-A39Y-01	RRP12	ENST00000536831.1,ENST00000315563.6,ENST00000479481.1,ENST00000370992.4,ENST00000414986.1	chr10	99129181:99129339:99129923:99130031:99130211:99130317,	99129924	99130031	99129956	99129956	Frame_Shift_Del	A	-	p.L922fs
LIHC	TCGA-DD-A39Y-01	RRP12	ENST00000536831.1,ENST00000315563.6,ENST00000479481.1,ENST00000370992.4,ENST00000414986.1	chr10	99129181:99129339:99129923:99130031:99130211:99130317,	99129924	99130031	99129986	99129986	Frame_Shift_Del	C	-	p.G912fs
LIHC	TCGA-DD-A39Y-01	EXOSC1	ENST00000477692.2	chr10	99197479:99197507:99198419:99198460:99200927:99201016,99196296:99196308:99198419:99198460:99200927:99201016,	99198420	99198460	99198433	99198433	Frame_Shift_Del	T	-	p.K113fs
LIHC	TCGA-DD-A39Y-01	EXOSC1	ENST00000485122.2	chr10	99197479:99197507:99198426:99198460:99200927:99201016,99196296:99196308:99198426:99198460:99200927:99201016,	99198427	99198460	99198433	99198433	Frame_Shift_Del	T	-	p.K113fs
LIHC	TCGA-DD-A39Y-01	ZDHHC16	ENST00000462924.1,ENST00000353979.3,ENST00000370846.4,ENST00000352634.4	chr10	99205968:99206110:99211427:99211675:99212171:99212222,99205968:99206110:99211427:99211675:99211846:99212041,	99211428	99211675	99211608	99211608	Frame_Shift_Del	C	-	p.T59fs
LIHC	TCGA-DD-A39Y-01	ZDHHC16	ENST00000370854.3,ENST00000462924.1,ENST00000353979.3,ENST00000370842.2,ENST00000414567.1,ENST00000420089.1,ENST00000417044.1,ENST00000370846.4,ENST00000492610.1,ENST00000393760.1,ENST00000352634.4,ENST00000495735.1	chr10	99211607:99211675:99211846:99212041:99212171:99212222,	99211847	99212041	99211957	99211957	Frame_Shift_Del	T	-	p.H118fs
LIHC	TCGA-DD-A39Y-01	MMS19	ENST00000434538.1,ENST00000438925.2,ENST00000495415.1,ENST00000355839.6,ENST00000370782.2,ENST00000478452.1,ENST00000415383.1,ENST00000327238.10	chr10	99221584:99221653:99221773:99221876:99222339:99222439,	99221774	99221876	99221805	99221805	Frame_Shift_Del	T	-	p.N695fs
LIHC	TCGA-DD-A39Y-01	CRTAC1	ENST00000370597.3	chr10	99624757:99625471:99640005:99640149:99642542:99642585,	99640006	99640149	99640100	99640100	Frame_Shift_Del	G	-	p.P575fs
LIHC	TCGA-DD-A39Y-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968288	99968288	Frame_Shift_Del	T	-	p.H139fs
LIHC	TCGA-DD-A39Y-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968658	99968658	Frame_Shift_Del	G	-	p.G263fs
LIHC	TCGA-DD-A39Y-01	LOXL4	ENST00000260702.3	chr10	100013309:100013553:100015333:100015496:100016536:100016704,	100015334	100015496	100015415	100015415	Frame_Shift_Del	G	-	p.L504fs
LIHC	TCGA-DD-A39Y-01	ENTPD7	ENST00000370489.4	chr10	101455712:101455879:101458290:101458615:101460729:101460815,	101458291	101458615	101458541	101458541	Frame_Shift_Del	T	-	p.F422fs
LIHC	TCGA-DD-A39Y-01	DNMBP	ENST00000324109.4,ENST00000543621.1	chr10	101654702:101654807:101656023:101656154:101657842:101658019,	101656024	101656154	101656110	101656110	Frame_Shift_Del	T	-	p.I1013fs
LIHC	TCGA-DD-A39Y-01	CWF19L1	ENST00000496796.1	chr10	102013177:102013296:102016018:102016233:102020722:102020785,102013177:102013296:102016018:102016233:102019974:102020076,102013177:102013296:102016018:102016233:102027327:102027355,	102016019	102016233	102016037	102016037	Frame_Shift_Del	C	-	p.G162fs
LIHC	TCGA-DD-A39Y-01	SCD	ENST00000370355.2	chr10	102114183:102114389:102116288:102116521:102120490:102120541,	102116289	102116521	102116354	102116354	Frame_Shift_Del	G	-	p.W238fs
LIHC	TCGA-DD-A39Y-01	PAX2	ENST00000553492.1,ENST00000556085.1,ENST00000361791.3,ENST00000554363.1,ENST00000355243.3	chr10	102539254:102539340:102541002:102541122:102566186:102566356,	102541003	102541122	102541005	102541005	Frame_Shift_Del	C	-	p.P167fs
LIHC	TCGA-DD-A39Y-01	PAX2	ENST00000554172.1	chr10	102539254:102539340:102541002:102541098:102566186:102566356,	102541003	102541098	102541005	102541005	Frame_Shift_Del	C	-	p.P167fs
LIHC	TCGA-DD-A39Y-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103285769:103285956:103290993:103291090:103292051:103292189,	103290994	103291090	103291010	103291010	Frame_Shift_Del	A	-	p.K254fs
LIHC	TCGA-DD-A39Y-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103285769:103285956:103290993:103291090:103292051:103292189,	103290994	103291090	103291040	103291040	Frame_Shift_Del	C	-	p.P264fs
LIHC	TCGA-DD-A39Y-01	POLL	ENST00000429502.1,ENST00000339310.3,ENST00000370158.3	chr10	103342519:103342648:103343264:103343438:103344358:103344477,103342519:103342648:103343264:103343438:103344634:103344676,103342519:103342648:103343264:103343438:103345618:103345913,103342519:103342648:103343264:103343438:103347002:103347139,	103343265	103343438	103343302	103343302	Frame_Shift_Del	C	-	p.G343fs
LIHC	TCGA-DD-A39Y-01	KCNIP2	ENST00000356640.2,ENST00000461105.1,ENST00000348850.5,ENST00000355657.2,ENST00000472764.1,ENST00000343195.4,ENST00000353068.3,ENST00000358038.3	chr10	103587645:103587750:103588145:103588216:103588383:103588453,103587907:103588015:103588145:103588216:103588383:103588453,	103588146	103588216	103588179	103588179	Frame_Shift_Del	A	-	p.F134fs
LIHC	TCGA-DD-A39Y-01	PPRC1	ENST00000278070.2,ENST00000413464.2	chr10	103898476:103898522:103898635:103898737:103898856:103901761,	103898636	103898737	103898666	103898666	Frame_Shift_Del	C	-	p.P175fs
LIHC	TCGA-DD-A39Y-01	GBF1	ENST00000369983.3	chr10	104118262:104118486:104119026:104119192:104119940:104120152,	104119027	104119192	104119043	104119043	Frame_Shift_Del	A	-	p.E343fs
LIHC	TCGA-DD-A39Y-01	PSD	ENST00000461698.1	chr10	104165104:104165293:104166979:104167023:104168651:104169047,	104166980	104167023	104166984	104166984	Frame_Shift_Del	C	-	p.A711fs
LIHC	TCGA-DD-A39Y-01	PSD	ENST00000406432.1,ENST00000020673.5	chr10	104171903:104171984:104172137:104172332:104173525:104173954,	104172138	104172332	104172154	104172154	Frame_Shift_Del	G	-	p.R578fs
LIHC	TCGA-DD-A39Y-01	SUFU	ENST00000369902.3	chr10	104375024:104375159:104377046:104377185:104386931:104387000,	104377047	104377185	104377138	104377138	Frame_Shift_Del	T	-	p.F417fs
LIHC	TCGA-DD-A39Y-01	TAF5	ENST00000369839.3	chr10	105142994:105143124:105145082:105145247:105146931:105147109,	105145083	105145247	105145225	105145225	Frame_Shift_Del	G	-	p.G604fs
LIHC	TCGA-DD-A39Y-01	PDCD11	ENST00000369797.3	chr10	105179294:105179465:105181104:105181324:105182744:105182894,	105181105	105181324	105181239	105181239	Frame_Shift_Del	G	-	p.L804fs
LIHC	TCGA-DD-A39Y-01	SFR1	ENST00000369727.3,ENST00000369729.3,ENST00000336358.5	chr10	105882722:105882844:105883471:105883882:105885270:105885602,	105883472	105883882	105883800	105883800	Frame_Shift_Del	A	-	p.E217fs
LIHC	TCGA-DD-A39Y-01	SORCS3	ENST00000369701.3	chr10	107015459:107015559:107016576:107016682:107022088:107022249,	107016577	107016682	107016616	107016616	Frame_Shift_Del	C	-	p.A1126fs
LIHC	TCGA-DD-A39Y-01	ADD3	ENST00000356080.4,ENST00000277900.8,ENST00000475954.1	chr10	111765561:111765909:111860382:111860606:111872534:111872652,111768009:111768057:111860382:111860606:111872534:111872652,	111860383	111860606	111860507	111860507	Frame_Shift_Del	C	-	p.D32fs
LIHC	TCGA-DD-A39Y-01	SMC3	ENST00000361804.4	chr10	112341680:112341856:112342319:112342400:112343141:112343306,	112342320	112342400	112342397	112342397	Frame_Shift_Del	G	-	p.M267fs
LIHC	TCGA-DD-A39Y-01	SMC3	ENST00000361804.4	chr10	112361723:112361936:112362231:112362423:112362582:112362760,	112362232	112362423	112362362	112362362	Frame_Shift_Del	G	-	p.R1079fs
LIHC	TCGA-DD-A39Y-01	SMC3	ENST00000361804.4	chr10	112361723:112361936:112362231:112362423:112362582:112362760,	112362232	112362423	112362387	112362387	Frame_Shift_Del	C	-	p.V1087fs
LIHC	TCGA-DD-A39Y-01	ACSL5	ENST00000369410.3,ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000354655.4	chr10	114181350:114181423:114181704:114181793:114182082:114182199,	114181705	114181793	114181719	114181719	Frame_Shift_Del	C	-	p.P468fs
LIHC	TCGA-DD-A39Y-01	TCF7L2	ENST00000369395.1,ENST00000355717.4,ENST00000542695.1,ENST00000369397.4,ENST00000352065.5	chr10	114710965:114711032:114711241:114711366:114724314:114724383,114710965:114711032:114711241:114711366:114799783:114799885,	114711242	114711366	114711294	114711294	Frame_Shift_Del	C	-	p.Y103fs
LIHC	TCGA-DD-A39Y-01	TCF7L2	ENST00000346198.4,ENST00000355717.4	chr10	114799783:114799885:114849158:114849299:114900942:114901075,	114849159	114849299	114849271	114849271	Frame_Shift_Del	A	-	p.Q199fs
LIHC	TCGA-DD-A39Y-01	TCF7L2	ENST00000369395.1	chr10	114799783:114799885:114849155:114849299:114900942:114901075,	114849156	114849299	114849271	114849271	Frame_Shift_Del	A	-	p.Q199fs
LIHC	TCGA-DD-A39Y-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115365936:115366041:115368172:115368271:115370217:115370322,	115368173	115368271	115368250	115368250	Frame_Shift_Del	G	-	p.H1217fs
LIHC	TCGA-DD-A39Y-01	NHLRC2	ENST00000369301.3	chr10	115644009:115644139:115657868:115657968:115661424:115661656,	115657869	115657968	115657964	115657964	Frame_Shift_Del	A	-	p.K379fs
LIHC	TCGA-DD-A39Y-01	TDRD1	ENST00000369280.1,ENST00000369282.1,ENST00000251864.2,ENST00000369281.2	chr10	115963146:115963326:115963831:115963975:115964480:115964652,	115963832	115963975	115963927	115963927	Frame_Shift_Del	A	-	p.L359fs
LIHC	TCGA-DD-A39Y-01	TDRD1	ENST00000369280.1,ENST00000369282.1,ENST00000251864.2	chr10	115970618:115970726:115971624:115971795:115973104:115973347,	115971625	115971795	115971708	115971708	Frame_Shift_Del	T	-	p.F582fs
LIHC	TCGA-DD-A39Y-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115987018	115987018	Frame_Shift_Del	A	-	p.A1121fs
LIHC	TCGA-DD-A39Y-01	TDRD1	ENST00000422662.1,ENST00000369282.1,ENST00000251864.2,ENST00000369281.2	chr10	115987668:115987715:115987796:115987884:115991244:115991486,	115987797	115987884	115987869	115987869	Frame_Shift_Del	A	-	p.K1176fs
LIHC	TCGA-DD-A39Y-01	VWA2	ENST00000603594.1,ENST00000298715.4,ENST00000392982.3	chr10	116013409:116013484:116014673:116014807:116020944:116021054,	116014674	116014807	116014798	116014798	Frame_Shift_Del	C	-	p.S84fs
LIHC	TCGA-DD-A39Y-01	VWA2	ENST00000603594.1,ENST00000298715.4,ENST00000392982.3	chr10	116044621:116044729:116045697:116046270:116048696:116049248,	116045698	116046270	116045891	116045891	Frame_Shift_Del	G	-	p.V397fs
LIHC	TCGA-DD-A39Y-01	ATRNL1	ENST00000423111.2,ENST00000424738.1,ENST00000355044.3	chr10	117228681:117228839:117278772:117278834:117308967:117309037,	117278773	117278834	117278815	117278815	Frame_Shift_Del	T	-	p.F1234fs
LIHC	TCGA-DD-A39Y-01	ENO4	ENST00000369207.2,ENST00000341276.5	chr10	118630638:118630803:118633586:118633712:118635575:118635771,	118633587	118633712	118633623	118633623	Frame_Shift_Del	A	-	p.K421fs
LIHC	TCGA-DD-A39Y-01	ENO4	ENST00000409522.1	chr10	118630635:118630803:118635575:118635771:118638801:118638869,	118635576	118635771	118635713	118635713	Frame_Shift_Del	A	-	p.I496fs
LIHC	TCGA-DD-A39Y-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120796630:120796821:120797749:120797951:120801505:120801697,	120797750	120797951	120797935	120797935	Frame_Shift_Del	T	-	p.K1181fs
LIHC	TCGA-DD-A39Y-01	SFXN4	ENST00000369131.4,ENST00000330036.6,ENST00000461438.1,ENST00000355697.2,ENST00000466218.1	chr10	120907289:120907372:120914573:120914689:120916189:120916268,	120914574	120914689	120914634	120914634	Frame_Shift_Del	C	-	p.G224fs
LIHC	TCGA-DD-A39Y-01	SFXN4	ENST00000369131.4,ENST00000330036.6,ENST00000461438.1,ENST00000355697.2,ENST00000466218.1	chr10	120907289:120907372:120914573:120914689:120916189:120916268,	120914574	120914689	120914657	120914657	Frame_Shift_Del	G	-	p.R217fs
LIHC	TCGA-DD-A39Y-01	SFXN4	ENST00000330036.6,ENST00000419372.1,ENST00000462913.1,ENST00000466218.1	chr10	120919239:120919265:120920426:120920481:120921851:120921926,	120920427	120920481	120920446	120920446	Frame_Shift_Del	G	-	p.P105fs
LIHC	TCGA-DD-A39Y-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121685547:121685739:121689118:121689274:121689840:121689943,	121689119	121689274	121689145	121689145	Frame_Shift_Del	T	-	p.D780fs
LIHC	TCGA-DD-A39Y-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121689156:121689274:121689840:121689943:121691644:121691830,	121689841	121689943	121689927	121689927	Frame_Shift_Del	A	-	p.R852fs
LIHC	TCGA-DD-A39Y-01	FGFR2	ENST00000359354.2,ENST00000457416.2,ENST00000357555.5,ENST00000351936.6,ENST00000369061.4,ENST00000358487.5,ENST00000360144.3,ENST00000490349.1,ENST00000369060.4,ENST00000369058.3,ENST00000346997.2,ENST00000336553.6,ENST00000369056.1	chr10	123298105:123298229:123310803:123310973:123353222:123353343,123298105:123298229:123310803:123310973:123324015:123324093,	123310804	123310973	123310847	123310847	Frame_Shift_Del	T	-	p.N194fs
LIHC	TCGA-DD-A39Y-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123629520:123629553:123658355:123658484:123661905:123662053,	123658356	123658484	123658461	123658461	Frame_Shift_Del	A	-	p.F279fs
LIHC	TCGA-DD-A39Y-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123659380:123659509:123661905:123662135:123670420:123670666,123658355:123658484:123661905:123662135:123670420:123670666,	123661906	123662135	123661934	123661934	Frame_Shift_Del	A	-	p.L262fs
LIHC	TCGA-DD-A39Y-01	ATE1	ENST00000423243.1,ENST00000540606.1,ENST00000224652.6,ENST00000369043.3,ENST00000455628.1,ENST00000369040.3	chr10	123662031:123662135:123670420:123670666:123681863:123681926,123662031:123662135:123670420:123670666:123673304:123673408,	123670421	123670666	123670534	123670534	Frame_Shift_Del	T	-	p.N157fs
LIHC	TCGA-DD-A39Y-01	ATE1	ENST00000535655.1	chr10	123670420:123670666:123673304:123673408:123681863:123681926,123670420:123670666:123673304:123673408:123683780:123683844,	123673305	123673408	123673361	123673361	Frame_Shift_Del	A	-	p.L94fs
LIHC	TCGA-DD-A39Y-01	NSMCE4A	ENST00000369023.3,ENST00000468209.1,ENST00000489266.1	chr10	123718879:123718925:123719015:123719110:123719872:123719921,	123719016	123719110	123719080	123719080	Frame_Shift_Del	C	-	p.G340fs
LIHC	TCGA-DD-A39Y-01	NSMCE4A	ENST00000369023.3,ENST00000369017.5,ENST00000464321.1,ENST00000538652.1,ENST00000468209.1,ENST00000489266.1	chr10	123724857:123724900:123727169:123727321:123730453:123730530,	123727170	123727321	123727189	123727189	Frame_Shift_Del	T	-	p.T53fs
LIHC	TCGA-DD-A39Y-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123846934	123846934	Frame_Shift_Del	T	-	p.V1640fs
LIHC	TCGA-DD-A39Y-01	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000338354.3	chr10	124344786:124344825:124345575:124345899:124348459:124348783,	124345576	124345899	124345751	124345751	Frame_Shift_Del	A	-	p.G545fs
LIHC	TCGA-DD-A39Y-01	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000338354.3	chr10	124344786:124344825:124345575:124345899:124348459:124348783,	124345576	124345899	124345835	124345835	Frame_Shift_Del	C	-	p.C573fs
LIHC	TCGA-DD-A39Y-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742491	124742491	Frame_Shift_Del	T	-	p.N153fs
LIHC	TCGA-DD-A39Y-01	PSTK	ENST00000405485.1	chr10	124742805:124742986:124745815:124747020:124749689:124749851,	124745816	124747020	124745831	124745831	Frame_Shift_Del	T	-	p.D241fs
LIHC	TCGA-DD-A39Y-01	PSTK	ENST00000483755.1	chr10	124742805:124742986:124745815:124745891:124746384:124746478,124742805:124742986:124745815:124745891:124749689:124749851,	124745816	124745891	124745831	124745831	Frame_Shift_Del	T	-	p.D241fs
LIHC	TCGA-DD-A39Y-01	ACADSB	ENST00000411816.1,ENST00000496730.2,ENST00000358776.4	chr10	124793871:124794031:124797262:124797363:124799981:124800173,	124797263	124797363	124797265	124797265	Frame_Shift_Del	A	-	p.K70fs
LIHC	TCGA-DD-A39Y-01	ACADSB	ENST00000496730.2,ENST00000358776.4	chr10	124797262:124797363:124799981:124800188:124800724:124800895,	124799982	124800188	124800030	124800030	Frame_Shift_Del	T	-	p.F118fs
LIHC	TCGA-DD-A39Y-01	OAT	ENST00000368845.5	chr10	126097461:126097534:126100541:126100769:126107441:126107505,	126100542	126100769	126100609	126100609	Frame_Shift_Del	A	-	p.F44fs
LIHC	TCGA-DD-A39Y-01	CTBP2	ENST00000411419.2,ENST00000494626.2,ENST00000531469.1,ENST00000337195.5	chr10	126691528:126691673:126691906:126692061:126727565:126727724,	126691907	126692061	126692017	126692017	Frame_Shift_Del	G	-	p.L575fs
LIHC	TCGA-DD-A39Y-01	CTBP2	ENST00000411419.2,ENST00000494626.2,ENST00000531469.1,ENST00000337195.5	chr10	126691528:126691673:126691906:126692061:126727565:126727724,	126691907	126692061	126692050	126692050	Frame_Shift_Del	G	-	p.Q564fs
LIHC	TCGA-DD-A39Y-01	BCCIP	ENST00000429863.2	chr10	127516126:127516207:127519988:127520176:127522340:127522515,	127519989	127520176	127520079	127520079	Frame_Shift_Del	T	-	p.F168fs
LIHC	TCGA-DD-A39Y-01	BCCIP	ENST00000278100.6	chr10	127519988:127520176:127522340:127522515:127529823:127529899,127519988:127520176:127522340:127522515:127524672:127525122,	127522341	127522515	127522504	127522504	Frame_Shift_Del	T	-	p.F256fs
LIHC	TCGA-DD-A39Y-01	DHX32	ENST00000284690.3	chr10	127541111:127541211:127542529:127542772:127548171:127548544,	127542530	127542772	127542585	127542585	Frame_Shift_Del	A	-	p.L346fs
LIHC	TCGA-DD-A39Y-01	DHX32	ENST00000284690.3	chr10	127542529:127542772:127548171:127548544:127555558:127555752,	127548172	127548544	127548407	127548407	Frame_Shift_Del	A	-	p.L206fs
LIHC	TCGA-DD-A39Y-01	DHX32	ENST00000415732.1	chr10	127555697:127555752:127569111:127569640:127584786:127585005,	127569112	127569640	127569190	127569190	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A39Y-01	FANK1	ENST00000368693.1	chr10	127661998:127662064:127668729:127668907:127677119:127677244,127585179:127585224:127668729:127668907:127677119:127677208,	127668730	127668907	127668875	127668875	Frame_Shift_Del	C	-	p.D47fs
LIHC	TCGA-DD-A39Y-01	C10orf90	ENST00000454341.1	chr10	128147608:128147786:128149969:128150154:128192525:128192687,	128149970	128150154	128150122	128150122	Frame_Shift_Del	T	-	p.I523fs
LIHC	TCGA-DD-A39Y-01	DOCK1	ENST00000280333.6	chr10	128925932:128926028:129046271:129046373:129055598:129055693,	129046272	129046373	129046353	129046353	Frame_Shift_Del	A	-	p.K956fs
LIHC	TCGA-DD-A39Y-01	PTPRE	ENST00000479896.1,ENST00000419012.2,ENST00000306042.5,ENST00000254667.3	chr10	129854386:129854477:129859202:129859279:129859942:129859979,	129859203	129859279	129859215	129859215	Frame_Shift_Del	G	-	p.R175fs
LIHC	TCGA-DD-A39Y-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913274	129913274	Frame_Shift_Del	T	-	p.K466fs
LIHC	TCGA-DD-A39Y-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913422	129913422	Frame_Shift_Del	T	-	p.N417fs
LIHC	TCGA-DD-A39Y-01	JAKMIP3	ENST00000298622.4	chr10	133978173:133978239:133980486:133980559:133981456:133982537,	133980487	133980559	133980505	133980505	Frame_Shift_Del	T	-	p.F836fs
LIHC	TCGA-DD-A39Y-01	ECHS1	ENST00000368547.3	chr10	135175983:135176437:135178161:135178229:135179479:135179599,	135178162	135178229	135178179	135178179	Frame_Shift_Del	A	-	p.Y264fs
LIHC	TCGA-DD-A39Y-01	SIRT3	ENST00000524564.1	chr11	230451:230552:232982:233215:236047:236326,	232983	233215	233111	233111	Frame_Shift_Del	A	-	p.F193fs
LIHC	TCGA-DD-A39Y-01	PSMD13	ENST00000533717.1,ENST00000431206.2,ENST00000382671.4,ENST00000532097.1,ENST00000528906.1,ENST00000525665.1	chr11	249008:249057:250802:250865:252504:252617,248931:249057:250802:250865:251819:251894,249008:249057:250802:250865:251545:251611,	250803	250865	250839	250839	Frame_Shift_Del	A	-	p.K271fs
LIHC	TCGA-DD-A39Y-01	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	280147	280147	Frame_Shift_Del	C	-	p.A138fs
LIHC	TCGA-DD-A39Y-01	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	281519	281519	Frame_Shift_Del	G	-	p.E595fs
LIHC	TCGA-DD-A39Y-01	SIGIRR	ENST00000332725.3,ENST00000527987.1,ENST00000397632.3,ENST00000431843.2	chr11	405727:406059:406348:406538:407061:407135,405727:406059:406348:406538:406842:406993,	406349	406538	406457	406457	Frame_Shift_Del	G	-	p.Q321fs
LIHC	TCGA-DD-A39Y-01	ANO9	ENST00000534161.1,ENST00000528927.1,ENST00000332826.6	chr11	418887:418989:419581:419729:420462:420615,	419582	419729	419640	419640	Frame_Shift_Del	G	-	p.R626fs
LIHC	TCGA-DD-A39Y-01	ANO9	ENST00000526142.1	chr11	418887:418989:419581:420615:420717:420860,	419582	420615	419640	419640	Frame_Shift_Del	G	-	p.R626fs
LIHC	TCGA-DD-A39Y-01	RASSF7	ENST00000454668.2,ENST00000397583.3,ENST00000344375.4,ENST00000397582.3,ENST00000431809.1	chr11	561761:561892:562078:562776:563188:563317,	562079	562776	562258	562258	Frame_Shift_Del	C	-	p.P103fs
LIHC	TCGA-DD-A39Y-01	RASSF7	ENST00000414138.2	chr11	561761:561892:562083:562776:563188:563317,	562084	562776	562258	562258	Frame_Shift_Del	C	-	p.P103fs
LIHC	TCGA-DD-A39Y-01	PHRF1	ENST00000264555.5,ENST00000533464.1,ENST00000413872.2,ENST00000416188.2	chr11	607065:609720:610195:610347:610500:610761,	610196	610347	610321	610321	Frame_Shift_Del	G	-	p.G1464fs
LIHC	TCGA-DD-A39Y-01	IRF7	ENST00000397566.1,ENST00000525445.1,ENST00000330243.5,ENST00000397574.2	chr11	613821:613865:613950:614037:614475:614531,613821:613865:613950:614037:614173:614399,	613951	614037	613972	613972	Frame_Shift_Del	G	-	p.Q262fs
LIHC	TCGA-DD-A39Y-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3,ENST00000531088.1,ENST00000349570.7	chr11	621561:621663:621811:621904:624212:624263,	621812	621904	621842	621842	Frame_Shift_Del	G	-	p.P125fs
LIHC	TCGA-DD-A39Y-01	EPS8L2	ENST00000530636.1,ENST00000524474.1,ENST00000533256.1,ENST00000526909.1,ENST00000526198.1,ENST00000318562.8	chr11	721564:721691:722090:722165:722400:722500,721904:721991:722090:722165:722400:722500,	722091	722165	722131	722131	Frame_Shift_Del	A	-	p.E342fs
LIHC	TCGA-DD-A39Y-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000530452.2,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722400:722549:722672:722805:723240:723345,	722673	722805	722732	722732	Frame_Shift_Del	G	-	p.W423fs
LIHC	TCGA-DD-A39Y-01	EPS8L2	ENST00000530636.1,ENST00000527832.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	725727:725847:726097:726170:726303:726484,	726098	726170	726143	726143	Frame_Shift_Del	C	-	p.P577fs
LIHC	TCGA-DD-A39Y-01	TALDO1	ENST00000319006.3,ENST00000533796.1,ENST00000530119.1,ENST00000528097.1	chr11	755878:756002:758949:759057:760121:760253,	758950	759057	758969	758969	Frame_Shift_Del	A	-	p.K81fs
LIHC	TCGA-DD-A39Y-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016161	1016161	Frame_Shift_Del	G	-	p.H2214fs
LIHC	TCGA-DD-A39Y-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264823	1264823	Frame_Shift_Del	T	-	p.L2241fs
LIHC	TCGA-DD-A39Y-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1265400	1265400	Frame_Shift_Del	G	-	p.P2433fs
LIHC	TCGA-DD-A39Y-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267023	1267023	Frame_Shift_Del	C	-	p.C2974fs
LIHC	TCGA-DD-A39Y-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267324	1267324	Frame_Shift_Del	T	-	p.F3075fs
LIHC	TCGA-DD-A39Y-01	LSP1	ENST00000406638.2,ENST00000472974.1,ENST00000432093.1,ENST00000405957.2,ENST00000485341.1,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1902661:1902826:1904648:1904790:1905161:1905227,	1904649	1904790	1904673	1904673	Frame_Shift_Del	G	-	p.K65fs
LIHC	TCGA-DD-A39Y-01	LSP1	ENST00000406638.2,ENST00000472974.1,ENST00000432093.1,ENST00000405957.2,ENST00000485341.1,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1902661:1902826:1904648:1904790:1905161:1905227,	1904649	1904790	1904721	1904721	Frame_Shift_Del	G	-	p.E81fs
LIHC	TCGA-DD-A39Y-01	TH	ENST00000333684.5,ENST00000381178.1,ENST00000324155.4,ENST00000352909.3,ENST00000381175.1	chr11	2186523:2186595:2186897:2186993:2187231:2187288,	2186898	2186993	2186948	2186948	Frame_Shift_Del	C	-	p.E415fs
LIHC	TCGA-DD-A39Y-01	TH	ENST00000333684.5,ENST00000381178.1,ENST00000324155.4,ENST00000352909.3,ENST00000381168.3,ENST00000381175.1	chr11	2189320:2189409:2189720:2189895:2190879:2190925,	2189721	2189895	2189734	2189734	Frame_Shift_Del	G	-	p.P189fs
LIHC	TCGA-DD-A39Y-01	C11orf21	ENST00000456145.2	chr11	2320654:2320937:2321749:2321843:2321913:2323102,	2321750	2321843	2321783	2321783	Frame_Shift_Del	C	-	p.W38fs
LIHC	TCGA-DD-A39Y-01	TSPAN32	ENST00000493924.1,ENST00000182290.4,ENST00000479508.1,ENST00000451520.2,ENST00000339046.4,ENST00000446063.2,ENST00000461200.1,ENST00000381121.3,ENST00000493948.1,ENST00000498313.1,ENST00000484104.1	chr11	2325336:2325434:2329965:2330040:2334883:2334938,	2329966	2330040	2330031	2330031	Frame_Shift_Del	C	-	p.S115fs
LIHC	TCGA-DD-A39Y-01	CD81	ENST00000530648.1,ENST00000527343.1,ENST00000533417.1,ENST00000464784.2,ENST00000492252.1,ENST00000381036.3,ENST00000475945.2,ENST00000492627.1,ENST00000493525.2,ENST00000263645.5,ENST00000530239.1,ENST00000526072.1	chr11	2411675:2411756:2415324:2415422:2416201:2416243,	2415325	2415422	2415416	2415416	Frame_Shift_Del	G	-	p.L91fs
LIHC	TCGA-DD-A39Y-01	ZNF195	ENST00000399602.4,ENST00000526540.1	chr11	3381707:3381795:3381949:3382018:3392204:3392300,3381707:3381795:3381949:3382018:3382972:3383119,	3381950	3382018	3381976	3381976	Frame_Shift_Del	A	-	p.L139fs
LIHC	TCGA-DD-A39Y-01	ART5	ENST00000397067.3	chr11	3659994:3660149:3660232:3660265:3661075:3661601,	3660233	3660265	3660250	3660250	Frame_Shift_Del	C	-	p.G268fs
LIHC	TCGA-DD-A39Y-01	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720389	3720389	Frame_Shift_Del	T	-	p.N1311fs
LIHC	TCGA-DD-A39Y-01	NUP98	ENST00000324932.7,ENST00000355260.3,ENST00000359171.4	chr11	3720311:3720578:3721839:3722069:3723692:3723881,	3721840	3722069	3722033	3722033	Frame_Shift_Del	T	-	p.K1183fs
LIHC	TCGA-DD-A39Y-01	PGAP2	ENST00000278243.4	chr11	3829828:3829881:3832479:3832654:3844842:3844970,3829828:3829881:3832479:3832654:3845112:3845145,3829527:3829545:3832479:3832654:3844138:3844223,3829527:3829545:3832479:3832654:3838582:3838765,3829527:3829545:3832479:3832654:3845499:3845550,3829527:3829545:3832479:3832654:3845112:3845145,3829828:3829881:3832479:3832654:3838582:3838765,	3832480	3832654	3832636	3832636	Frame_Shift_Del	A	-	p.T50fs
LIHC	TCGA-DD-A39Y-01	RRM1	ENST00000423050.2,ENST00000537197.1,ENST00000533349.1,ENST00000534285.1,ENST00000532170.1,ENST00000533495.1,ENST00000300738.5	chr11	4147913:4148063:4148264:4148486:4150303:4150380,	4148265	4148486	4148388	4148388	Frame_Shift_Del	T	-	p.F532fs
LIHC	TCGA-DD-A39Y-01	FAM160A2	ENST00000265978.4,ENST00000449352.2	chr11	6235640:6235803:6235962:6236141:6238600:6239380,	6235963	6236141	6235984	6235984	Frame_Shift_Del	G	-	p.P805fs
LIHC	TCGA-DD-A39Y-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6413286	6413286	Frame_Shift_Del	C	-	p.P332fs
LIHC	TCGA-DD-A39Y-01	APBB1	ENST00000311051.3	chr11	6424876:6425052:6431856:6432591:6440214:6440300,6424876:6425052:6431856:6432591:6440575:6440644,	6431857	6432591	6432412	6432412	Frame_Shift_Del	C	-	p.E56fs
LIHC	TCGA-DD-A39Y-01	DNHD1	ENST00000254579.6,ENST00000527990.2	chr11	6586924:6587221:6587470:6587623:6587816:6587995,	6587471	6587623	6587618	6587618	Frame_Shift_Del	A	-	p.E3734fs
LIHC	TCGA-DD-A39Y-01	DNHD1	ENST00000525883.1	chr11	6586924:6587221:6587330:6587623:6587816:6587995,	6587331	6587623	6587618	6587618	Frame_Shift_Del	A	-	p.E3734fs
LIHC	TCGA-DD-A39Y-01	TAF10	ENST00000527248.1,ENST00000299424.4	chr11	6632136:6632242:6632419:6632534:6632618:6632683,	6632420	6632534	6632476	6632476	Frame_Shift_Del	G	-	p.L171fs
LIHC	TCGA-DD-A39Y-01	ZNF215	ENST00000527171.1	chr11	6962801:6962884:6964776:6964872:6976920:6977013,	6964777	6964872	6964824	6964824	Frame_Shift_Del	A	-	p.K223fs
LIHC	TCGA-DD-A39Y-01	SYT9	ENST00000318881.6	chr11	7324269:7324621:7334625:7335172:7437272:7437393,	7334626	7335172	7334688	7334688	Frame_Shift_Del	A	-	p.Q187fs
LIHC	TCGA-DD-A39Y-01	SYT9	ENST00000318881.6	chr11	7324269:7324621:7334625:7335172:7437272:7437393,	7334626	7335172	7334882	7334882	Frame_Shift_Del	T	-	p.F252fs
LIHC	TCGA-DD-A39Y-01	TUB	ENST00000534099.1,ENST00000299506.2,ENST00000305253.4	chr11	8111615:8111778:8115592:8115736:8117044:8117212,	8115593	8115736	8115688	8115688	Frame_Shift_Del	G	-	p.G173fs
LIHC	TCGA-DD-A39Y-01	RIC3	ENST00000531450.1	chr11	8132453:8132684:8148205:8148438:8158924:8159014,	8148206	8148438	8148254	8148254	Frame_Shift_Del	A	-	p.S46fs
LIHC	TCGA-DD-A39Y-01	RIC3	ENST00000524799.1,ENST00000343202.4	chr11	8132453:8132684:8148205:8148351:8190412:8190536,8132453:8132684:8148205:8148351:8158924:8159014,	8148206	8148351	8148254	8148254	Frame_Shift_Del	A	-	p.S46fs
LIHC	TCGA-DD-A39Y-01	RIC3	ENST00000309737.6,ENST00000539720.1,ENST00000528463.1	chr11	8132453:8132684:8148205:8148354:8158924:8159014,	8148206	8148354	8148254	8148254	Frame_Shift_Del	A	-	p.S46fs
LIHC	TCGA-DD-A39Y-01	STK33	ENST00000396672.1,ENST00000315204.1,ENST00000396673.1,ENST00000457885.2,ENST00000534493.1,ENST00000447869.1,ENST00000418597.1,ENST00000422559.2	chr11	8486255:8486369:8494709:8494823:8496227:8496302,	8494710	8494823	8494774	8494774	Frame_Shift_Del	C	-	p.G92fs
LIHC	TCGA-DD-A39Y-01	TRIM66	ENST00000530502.1	chr11	8641992:8642119:8642578:8642784:8643191:8643366,	8642579	8642784	8642705	8642705	Frame_Shift_Del	G	-	p.P993fs
LIHC	TCGA-DD-A39Y-01	TRIM66	ENST00000299550.6,ENST00000402157.2,ENST00000481014.2	chr11	8641992:8642119:8642578:8642868:8643191:8643366,	8642579	8642868	8642705	8642705	Frame_Shift_Del	G	-	p.P993fs
LIHC	TCGA-DD-A39Y-01	RPL27A	ENST00000531978.1,ENST00000530585.1,ENST00000532359.1	chr11	8704338:8704363:8704748:8704812:8705552:8705628,	8704749	8704812	8704780	8704780	Frame_Shift_Del	G	-	p.R12fs
LIHC	TCGA-DD-A39Y-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752124	8752124	Frame_Shift_Del	G	-	p.P238fs
LIHC	TCGA-DD-A39Y-01	AKIP1	ENST00000525005.1,ENST00000309357.4,ENST00000524577.1,ENST00000309377.4,ENST00000534147.1,ENST00000530281.1	chr11	8933161:8933218:8933999:8934080:8936372:8936477,	8934000	8934080	8934019	8934019	Frame_Shift_Del	C	-	p.T81fs
LIHC	TCGA-DD-A39Y-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2	chr11	9052304:9052472:9055172:9055343:9068902:9069109,	9055173	9055343	9055215	9055215	Frame_Shift_Del	C	-	p.A711fs
LIHC	TCGA-DD-A39Y-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1	chr11	9173904:9173989:9182259:9182412:9187382:9187514,	9182260	9182412	9182322	9182322	Frame_Shift_Del	G	-	p.L792fs
LIHC	TCGA-DD-A39Y-01	DENND5A	ENST00000328194.3,ENST00000530044.1,ENST00000526707.1	chr11	9191469:9191496:9192173:9192324:9199678:9199795,	9192174	9192324	9192267	9192267	Frame_Shift_Del	A	-	p.L656fs
LIHC	TCGA-DD-A39Y-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500077	10500077	Frame_Shift_Del	A	-	p.K85fs
LIHC	TCGA-DD-A39Y-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500145	10500145	Frame_Shift_Del	C	-	p.G107fs
LIHC	TCGA-DD-A39Y-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500209	10500209	Frame_Shift_Del	C	-	p.P129fs
LIHC	TCGA-DD-A39Y-01	AMPD3	ENST00000529834.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000444303.2,ENST00000534047.1	chr11	10518358:10518485:10521632:10521796:10523016:10523137,	10521633	10521796	10521638	10521638	Frame_Shift_Del	G	-	p.T362fs
LIHC	TCGA-DD-A39Y-01	AMPD3	ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000529744.1,ENST00000528723.1,ENST00000444303.2,ENST00000534047.1	chr11	10524329:10524441:10526095:10526206:10527254:10527359,	10526096	10526206	10526109	10526109	Frame_Shift_Del	A	-	p.E519fs
LIHC	TCGA-DD-A39Y-01	LYVE1	ENST00000531706.1,ENST00000256178.3	chr11	10582041:10582347:10585486:10585626:10585749:10585777,	10585487	10585626	10585572	10585572	Frame_Shift_Del	G	-	p.P104fs
LIHC	TCGA-DD-A39Y-01	MRVI1	ENST00000527509.2,ENST00000531107.1,ENST00000421747.1,ENST00000534266.2,ENST00000552103.1,ENST00000424001.1,ENST00000545852.1,ENST00000529448.1,ENST00000547195.1,ENST00000558540.1,ENST00000436272.1,ENST00000423302.2	chr11	10645324:10645403:10647512:10648130:10649262:10649304,	10647513	10648130	10648006	10648006	Frame_Shift_Del	T	-	p.N201fs
LIHC	TCGA-DD-A39Y-01	CTR9	ENST00000361367.2	chr11	10786094:10786278:10787948:10788037:10789352:10789538,	10787949	10788037	10787990	10787990	Frame_Shift_Del	T	-	p.F547fs
LIHC	TCGA-DD-A39Y-01	EIF4G2	ENST00000339995.5,ENST00000532082.1,ENST00000531416.1,ENST00000525681.1,ENST00000396525.2,ENST00000526148.1	chr11	10824807:10824841:10825026:10825137:10825445:10825597,	10825027	10825137	10825105	10825105	Frame_Shift_Del	T	-	p.K245fs
LIHC	TCGA-DD-A39Y-01	EIF4G2	ENST00000339995.5,ENST00000532152.1,ENST00000524932.1,ENST00000532082.1,ENST00000531416.1,ENST00000525681.1,ENST00000532570.1,ENST00000396525.2,ENST00000527419.1,ENST00000528562.1,ENST00000531507.1,ENST00000526148.1,ENST00000525972.1	chr11	10825947:10825965:10826459:10826562:10827453:10827496,	10826460	10826562	10826532	10826532	Frame_Shift_Del	A	-	p.F93fs
LIHC	TCGA-DD-A39Y-01	GALNT18	ENST00000227756.4	chr11	11394061:11394176:11398728:11398926:11400627:11400811,	11398729	11398926	11398770	11398770	Frame_Shift_Del	G	-	p.P312fs
LIHC	TCGA-DD-A39Y-01	USP47	ENST00000399455.2,ENST00000539466.1,ENST00000527733.1,ENST00000339865.5	chr11	11906013:11906127:11913514:11913653:11919143:11919240,	11913515	11913653	11913584	11913584	Frame_Shift_Del	G	-	p.G76fs
LIHC	TCGA-DD-A39Y-01	USP47	ENST00000399455.2,ENST00000539466.1,ENST00000527733.1,ENST00000339865.5	chr11	11913514:11913653:11919143:11919240:11924261:11924407,	11919144	11919240	11919192	11919192	Frame_Shift_Del	T	-	p.L115fs
LIHC	TCGA-DD-A39Y-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12923486:12923660:12946458:12946599:12951720:12951873,	12946459	12946599	12946497	12946497	Frame_Shift_Del	T	-	p.A289fs
LIHC	TCGA-DD-A39Y-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12923486:12923660:12946458:12946599:12951720:12951873,	12946459	12946599	12946532	12946532	Frame_Shift_Del	A	-	p.E301fs
LIHC	TCGA-DD-A39Y-01	ARNTL	ENST00000497429.1,ENST00000396441.3,ENST00000389708.3,ENST00000401424.1,ENST00000361003.4,ENST00000403510.3,ENST00000403290.1,ENST00000389707.4,ENST00000403482.3	chr11	13381891:13381971:13387046:13387139:13388211:13388329,	13387047	13387139	13387059	13387059	Frame_Shift_Del	T	-	p.F158fs
LIHC	TCGA-DD-A39Y-01	INSC	ENST00000379554.3,ENST00000424273.1,ENST00000525218.1,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15170675:15170776:15197286:15197632:15198656:15198709,	15197287	15197632	15197622	15197622	Frame_Shift_Del	A	-	p.E178fs
LIHC	TCGA-DD-A39Y-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16119154:16119234:16133348:16133469:16205431:16205500,	16133349	16133469	16133431	16133431	Frame_Shift_Del	A	-	p.F272fs
LIHC	TCGA-DD-A39Y-01	PLEKHA7	ENST00000355661.3,ENST00000531066.1,ENST00000448080.2	chr11	16877349:16877461:16892645:16892729:17035535:17035593,	16892646	16892729	16892670	16892670	Frame_Shift_Del	T	-	p.N94fs
LIHC	TCGA-DD-A39Y-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17131978:17132108:17134120:17134213:17135907:17136012,	17134121	17134213	17134175	17134175	Frame_Shift_Del	T	-	p.K1120fs
LIHC	TCGA-DD-A39Y-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17144248:17144360:17150846:17151014:17153462:17153585,	17150847	17151014	17150951	17150951	Frame_Shift_Del	A	-	p.F765fs
LIHC	TCGA-DD-A39Y-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17156657:17156706:17158028:17158172:17167214:17167278,	17158029	17158172	17158127	17158127	Frame_Shift_Del	T	-	p.I584fs
LIHC	TCGA-DD-A39Y-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190949	17190949	Frame_Shift_Del	T	-	p.T114fs
LIHC	TCGA-DD-A39Y-01	ABCC8	ENST00000389817.3,ENST00000302539.4,ENST00000527905.1,ENST00000532728.1	chr11	17491647:17491769:17496432:17496574:17498175:17498354,	17496433	17496574	17496568	17496568	Frame_Shift_Del	C	-	p.G52fs
LIHC	TCGA-DD-A39Y-01	USH1C	ENST00000318024.4,ENST00000526181.1,ENST00000526313.1,ENST00000527720.1,ENST00000005226.7	chr11	17544429:17544473:17544757:17544814:17544965:17545025,	17544758	17544814	17544807	17544807	Frame_Shift_Del	T	-	p.N276fs
LIHC	TCGA-DD-A39Y-01	SAAL1	ENST00000524803.1	chr11	18102957:18103050:18105081:18105278:18108412:18108507,	18105082	18105278	18105138	18105138	Frame_Shift_Del	T	-	p.I395fs
LIHC	TCGA-DD-A39Y-01	SAAL1	ENST00000534721.1	chr11	18102957:18103050:18105081:18105256:18108412:18108507,	18105082	18105256	18105138	18105138	Frame_Shift_Del	T	-	p.I395fs
LIHC	TCGA-DD-A39Y-01	SAAL1	ENST00000300013.4	chr11	18102957:18103050:18105081:18105275:18108412:18108507,	18105082	18105275	18105138	18105138	Frame_Shift_Del	T	-	p.I395fs
LIHC	TCGA-DD-A39Y-01	SAAL1	ENST00000531751.1	chr11	18105081:18105278:18108412:18108601:18108689:18108753,18102957:18103050:18108412:18108601:18108689:18108753,	18108413	18108601	18108504	18108504	Frame_Shift_Del	T	-	p.Q317fs
LIHC	TCGA-DD-A39Y-01	HPS5	ENST00000352460.3	chr11	18309439:18309560:18312988:18313566:18314445:18314523,18309439:18309560:18312988:18313566:18316566:18316716,	18312989	18313566	18313352	18313352	Frame_Shift_Del	T	-	p.R579fs
LIHC	TCGA-DD-A39Y-01	LDHC	ENST00000280704.4,ENST00000539369.1,ENST00000541669.1,ENST00000536880.1,ENST00000396215.3	chr11	18460074:18460192:18467756:18467880:18472509:18472674,	18467757	18467880	18467768	18467768	Frame_Shift_Del	T	-	p.I242fs
LIHC	TCGA-DD-A39Y-01	LDHC	ENST00000280704.4,ENST00000539369.1,ENST00000541669.1,ENST00000536880.1,ENST00000396215.3	chr11	18460074:18460192:18467756:18467880:18472509:18472674,	18467757	18467880	18467781	18467781	Frame_Shift_Del	G	-	p.K245fs
LIHC	TCGA-DD-A39Y-01	CSRP3	ENST00000533783.1	chr11	19209682:19209851:19213883:19214023:19223500:19223589,	19213884	19214023	19213969	19213969	Frame_Shift_Del	T	-	p.K9fs
LIHC	TCGA-DD-A39Y-01	E2F8	ENST00000527884.1,ENST00000250024.4	chr11	19255906:19256068:19256290:19256605:19258860:19259017,	19256291	19256605	19256425	19256425	Frame_Shift_Del	T	-	p.K212fs
LIHC	TCGA-DD-A39Y-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000533746.1,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20127076:20127273:20129209:20129328:20136137:20136226,	20129210	20129328	20129292	20129292	Frame_Shift_Del	C	-	p.I2311fs
LIHC	TCGA-DD-A39Y-01	HTATIP2	ENST00000443524.2,ENST00000419348.2,ENST00000421577.2,ENST00000451739.2	chr11	20388719:20388827:20398125:20398263:20403723:20403785,	20398126	20398263	20398242	20398242	Frame_Shift_Del	T	-	p.N140fs
LIHC	TCGA-DD-A39Y-01	PRMT3	ENST00000330796.5,ENST00000437750.2,ENST00000331079.6	chr11	20417348:20417508:20419122:20419267:20424464:20424530,	20419123	20419267	20419203	20419203	Frame_Shift_Del	A	-	p.E214fs
LIHC	TCGA-DD-A39Y-01	PRMT3	ENST00000330796.5,ENST00000437750.2,ENST00000331079.6	chr11	20417348:20417508:20419122:20419267:20424464:20424530,	20419123	20419267	20419235	20419235	Frame_Shift_Del	G	-	p.G225fs
LIHC	TCGA-DD-A39Y-01	PRMT3	ENST00000330796.5,ENST00000437750.2,ENST00000331079.6	chr11	20417348:20417508:20419122:20419267:20424464:20424530,	20419123	20419267	20419240	20419240	Frame_Shift_Del	T	-	p.H226fs
LIHC	TCGA-DD-A39Y-01	MUC15	ENST00000436318.2,ENST00000529533.1,ENST00000455601.2	chr11	26582308:26582772:26584662:26584812:26586711:26587443,	26584663	26584812	26584717	26584717	Frame_Shift_Del	T	-	p.R291fs
LIHC	TCGA-DD-A39Y-01	SLC5A12	ENST00000280467.6,ENST00000527405.1,ENST00000533617.1,ENST00000396005.3	chr11	26725077:26725218:26725339:26725494:26730858:26730926,	26725340	26725494	26725361	26725361	Frame_Shift_Del	C	-	p.G220fs
LIHC	TCGA-DD-A39Y-01	BBOX1	ENST00000529202.1,ENST00000263182.3,ENST00000528583.1,ENST00000525090.1	chr11	27078747:27078862:27114714:27114913:27136998:27137104,	27114715	27114913	27114906	27114906	Frame_Shift_Del	T	-	p.F176fs
LIHC	TCGA-DD-A39Y-01	BBOX1	ENST00000529202.1,ENST00000263182.3,ENST00000528583.1,ENST00000525090.1	chr11	27136998:27137104:27141195:27141392:27147200:27147367,	27141196	27141392	27141256	27141256	Frame_Shift_Del	G	-	p.G234fs
LIHC	TCGA-DD-A39Y-01	LGR4	ENST00000379214.4	chr11	27412640:27412712:27413993:27414065:27493664:27493861,27412640:27412712:27413993:27414065:27434335:27434407,	27413994	27414065	27414014	27414014	Frame_Shift_Del	C	-	p.G103fs
LIHC	TCGA-DD-A39Y-01	MPPED2	ENST00000448418.2,ENST00000358117.5	chr11	30526282:30526380:30557540:30557722:30601792:30602041,30516842:30517068:30557540:30557722:30601792:30602041,	30557541	30557722	30557616	30557616	Frame_Shift_Del	C	-	p.D79fs
LIHC	TCGA-DD-A39Y-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P389fs
LIHC	TCGA-DD-A39Y-01	EIF3M	ENST00000526267.1,ENST00000323213.5,ENST00000531120.1,ENST00000525054.1,ENST00000524896.1	chr11	32615411:32615495:32616459:32616559:32617511:32617556,	32616460	32616559	32616533	32616533	Frame_Shift_Del	T	-	p.F231fs
LIHC	TCGA-DD-A39Y-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635181	32635181	Frame_Shift_Del	T	-	p.T895fs
LIHC	TCGA-DD-A39Y-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635393	32635393	Frame_Shift_Del	T	-	p.N824fs
LIHC	TCGA-DD-A39Y-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635880	32635880	Frame_Shift_Del	T	-	p.I662fs
LIHC	TCGA-DD-A39Y-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636152	32636152	Frame_Shift_Del	T	-	p.N572fs
LIHC	TCGA-DD-A39Y-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636271	32636271	Frame_Shift_Del	A	-	p.F531fs
LIHC	TCGA-DD-A39Y-01	PRRG4	ENST00000257836.3	chr11	32852053:32852178:32858203:32858367:32860427:32860476,	32858204	32858367	32858297	32858297	Frame_Shift_Del	A	-	p.E66fs
LIHC	TCGA-DD-A39Y-01	PRRG4	ENST00000257836.3	chr11	32852053:32852178:32858203:32858367:32860427:32860476,	32858204	32858367	32858345	32858345	Frame_Shift_Del	T	-	p.I82fs
LIHC	TCGA-DD-A39Y-01	QSER1	ENST00000527788.1,ENST00000399302.2,ENST00000524678.1	chr11	32979414:32979632:32987845:32987983:32990591:32990614,	32987846	32987983	32987878	32987878	Frame_Shift_Del	T	-	p.F1539fs
LIHC	TCGA-DD-A39Y-01	DEPDC7	ENST00000311388.3,ENST00000241051.3	chr11	33049231:33049359:33050148:33050338:33052923:33053135,	33050149	33050338	33050179	33050179	Frame_Shift_Del	T	-	p.I199fs
LIHC	TCGA-DD-A39Y-01	DEPDC7	ENST00000311388.3,ENST00000241051.3	chr11	33049231:33049359:33050148:33050338:33052923:33053135,	33050149	33050338	33050250	33050250	Frame_Shift_Del	A	-	p.K223fs
LIHC	TCGA-DD-A39Y-01	TCP11L1	ENST00000527661.1,ENST00000334274.4	chr11	33061560:33061752:33065295:33065482:33076138:33076271,33061132:33061338:33065295:33065482:33076138:33076271,	33065296	33065482	33065429	33065429	Frame_Shift_Del	A	-	p.Q37fs
LIHC	TCGA-DD-A39Y-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308540	33308540	Frame_Shift_Del	A	-	p.K194fs
LIHC	TCGA-DD-A39Y-01	HIPK3	ENST00000303296.4	chr11	33369401:33369559:33369711:33369774:33370067:33370364,	33369712	33369774	33369717	33369717	Frame_Shift_Del	T	-	p.I771fs
LIHC	TCGA-DD-A39Y-01	KIAA1549L	ENST00000321505.4,ENST00000526400.1,ENST00000389726.3	chr11	33604883:33605047:33612782:33612967:33620365:33620493,	33612783	33612967	33612828	33612828	Frame_Shift_Del	G	-	p.G1241fs
LIHC	TCGA-DD-A39Y-01	KIAA1549L	ENST00000321505.4,ENST00000389726.3	chr11	33640078:33640208:33667231:33667582:33677557:33677655,	33667232	33667582	33667360	33667360	Frame_Shift_Del	G	-	p.E1549fs
LIHC	TCGA-DD-A39Y-01	ELF5	ENST00000528709.1	chr11	34503977:34504046:34511555:34511606:34515025:34515259,34503977:34504046:34511555:34511606:34527175:34527300,	34511556	34511606	34511593	34511593	Frame_Shift_Del	A	-	p.F133fs
LIHC	TCGA-DD-A39Y-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34664174:34664274:34667985:34668231:34670565:34670628,	34667986	34668231	34668013	34668013	Frame_Shift_Del	G	-	p.W42fs
LIHC	TCGA-DD-A39Y-01	APIP	ENST00000278359.5,ENST00000527830.1,ENST00000532428.2,ENST00000395787.3	chr11	34904222:34904363:34904883:34905051:34909839:34909975,	34904884	34905051	34904909	34904909	Frame_Shift_Del	C	-	p.E202fs
LIHC	TCGA-DD-A39Y-01	PDHX	ENST00000477173.3	chr11	35006179:35006275:35013861:35013926:35016460:35016724,35006179:35006275:35013861:35013926:35041754:35042138,	35013862	35013926	35013874	35013874	Frame_Shift_Del	A	-	p.K384fs
LIHC	TCGA-DD-A39Y-01	ALKBH3	ENST00000532129.1	chr11	43913590:43913679:43923065:43923275:43940587:43940592,43911311:43911378:43923065:43923275:43940587:43940592,	43923066	43923275	43923192	43923192	Frame_Shift_Del	C	-	p.P196fs
LIHC	TCGA-DD-A39Y-01	ACCS	ENST00000527346.1	chr11	44097080:44097142:44098872:44101170:44102569:44102615,	44098873	44101170	44100295	44100295	Frame_Shift_Del	C	-	p.S265fs
LIHC	TCGA-DD-A39Y-01	ACCS	ENST00000531940.1	chr11	44098828:44098926:44099394:44100334:44101080:44101157,	44099395	44100334	44100295	44100295	Frame_Shift_Del	C	-	p.S265fs
LIHC	TCGA-DD-A39Y-01	ACCS	ENST00000263776.8	chr11	44099394:44099472:44100233:44100334:44101080:44101157,	44100234	44100334	44100295	44100295	Frame_Shift_Del	C	-	p.S265fs
LIHC	TCGA-DD-A39Y-01	MAPK8IP1	ENST00000241014.2,ENST00000395629.2	chr11	45925539:45925712:45926005:45926115:45926268:45926385,	45926006	45926115	45926040	45926040	Frame_Shift_Del	C	-	p.F557fs
LIHC	TCGA-DD-A39Y-01	PEX16	ENST00000378750.5,ENST00000525229.1,ENST00000525192.1,ENST00000241041.3,ENST00000532681.1	chr11	45937253:45937387:45937777:45937854:45939008:45939044,	45937778	45937854	45937788	45937788	Frame_Shift_Del	T	-	p.K72fs
LIHC	TCGA-DD-A39Y-01	PHF21A	ENST00000530587.1,ENST00000527401.1,ENST00000418153.2,ENST00000323180.6,ENST00000257821.4	chr11	45957244:45957290:45958044:45958120:45959707:45959815,	45958045	45958120	45958049	45958049	Frame_Shift_Del	T	-	p.K560fs
LIHC	TCGA-DD-A39Y-01	PHF21A	ENST00000527401.1,ENST00000418153.2,ENST00000257821.4	chr11	45958044:45958120:45959707:45959863:45967390:45967420,	45959708	45959863	45959760	45959760	Frame_Shift_Del	G	-	p.P519fs
LIHC	TCGA-DD-A39Y-01	PHF21A	ENST00000418153.2	chr11	45986865:45987159:45991365:45991452:45992666:45992918,	45991366	45991452	45991403	45991403	Frame_Shift_Del	G	-	p.P223fs
LIHC	TCGA-DD-A39Y-01	PHF21A	ENST00000323180.6,ENST00000257821.4	chr11	45986865:45987159:45991365:45991455:45992666:45992918,	45991366	45991455	45991403	45991403	Frame_Shift_Del	G	-	p.P223fs
LIHC	TCGA-DD-A39Y-01	PHF21A	ENST00000323180.6,ENST00000257821.4	chr11	45991365:45991452:45992666:45992918:46001310:46001517,45991365:45991455:45992666:45992918:46001310:46001517,	45992667	45992918	45992680	45992680	Frame_Shift_Del	T	-	p.N200fs
LIHC	TCGA-DD-A39Y-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000524984.1,ENST00000531879.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000528173.1,ENST00000527911.1	chr11	46393977:46394060:46394166:46394227:46394320:46394393,	46394167	46394227	46394213	46394213	Frame_Shift_Del	G	-	p.G542fs
LIHC	TCGA-DD-A39Y-01	MDK	ENST00000359803.3,ENST00000395566.4,ENST00000533952.1,ENST00000481047.1,ENST00000407067.1,ENST00000395565.1,ENST00000490240.1,ENST00000489525.1,ENST00000405308.2	chr11	46403242:46403308:46403843:46404011:46404136:46404286,46403606:46403683:46403843:46404011:46404136:46404147,	46403844	46404011	46403892	46403892	Frame_Shift_Del	G	-	p.W42fs
LIHC	TCGA-DD-A39Y-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46567250:46567326:46568662:46568846:46569366:46569425,	46568663	46568846	46568732	46568732	Frame_Shift_Del	A	-	p.F103fs
LIHC	TCGA-DD-A39Y-01	ATG13	ENST00000528984.1,ENST00000529655.1,ENST00000359513.4,ENST00000526508.1,ENST00000434074.1,ENST00000534610.1,ENST00000527907.1,ENST00000524625.1,ENST00000451945.1,ENST00000312040.4,ENST00000530500.1,ENST00000528494.1	chr11	46678644:46678741:46679073:46679172:46680941:46680952,	46679074	46679172	46679088	46679088	Frame_Shift_Del	C	-	p.T204fs
LIHC	TCGA-DD-A39Y-01	F2	ENST00000311907.5,ENST00000530231.1,ENST00000442468.1	chr11	46742339:46742390:46744729:46744835:46744931:46745068,	46744730	46744835	46744781	46744781	Frame_Shift_Del	C	-	p.T123fs
LIHC	TCGA-DD-A39Y-01	F2	ENST00000311907.5	chr11	46749545:46749713:46750213:46750387:46750929:46751003,	46750214	46750387	46750297	46750297	Frame_Shift_Del	G	-	p.R461fs
LIHC	TCGA-DD-A39Y-01	CKAP5	ENST00000533413.1,ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46782161:46782334:46783549:46783743:46784176:46784312,	46783550	46783743	46783680	46783680	Frame_Shift_Del	G	-	p.P1364fs
LIHC	TCGA-DD-A39Y-01	CKAP5	ENST00000533413.1,ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1,ENST00000526943.1	chr11	46784695:46784729:46785030:46785180:46786680:46786806,	46785031	46785180	46785155	46785155	Frame_Shift_Del	G	-	p.P1188fs
LIHC	TCGA-DD-A39Y-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46804823:46804918:46806037:46806223:46810230:46810323,	46806038	46806223	46806169	46806169	Frame_Shift_Del	A	-	p.S675fs
LIHC	TCGA-DD-A39Y-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46822749:46822854:46829580:46829694:46830949:46831050,	46829581	46829694	46829661	46829661	Frame_Shift_Del	G	-	p.L300fs
LIHC	TCGA-DD-A39Y-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46822749:46822854:46829580:46829694:46830949:46831050,	46829581	46829694	46829683	46829683	Frame_Shift_Del	T	-	p.K292fs
LIHC	TCGA-DD-A39Y-01	CKAP5	ENST00000354558.3,ENST00000526496.1,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46837753:46837955:46839860:46840054:46842725:46842808,	46839861	46840054	46839947	46839947	Frame_Shift_Del	T	-	p.K55fs
LIHC	TCGA-DD-A39Y-01	ARFGAP2	ENST00000529455.1	chr11	47193862:47193884:47196732:47196864:47197401:47197474,	47196733	47196864	47196853	47196853	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A39Y-01	MADD	ENST00000395336.3,ENST00000311027.5	chr11	47312160:47312367:47314093:47314147:47315433:47315534,	47314094	47314147	47314120	47314120	Frame_Shift_Del	A	-	p.K1131fs
LIHC	TCGA-DD-A39Y-01	MYBPC3	ENST00000545968.1,ENST00000256993.4,ENST00000544791.1,ENST00000399249.2	chr11	47360070:47360230:47360874:47360955:47361201:47361341,	47360875	47360955	47360918	47360918	Frame_Shift_Del	G	-	p.P702fs
LIHC	TCGA-DD-A39Y-01	SPI1	ENST00000378538.3,ENST00000227163.4	chr11	47376651:47377097:47380394:47380557:47381403:47381591,	47380395	47380557	47380511	47380511	Frame_Shift_Del	G	-	p.P126fs
LIHC	TCGA-DD-A39Y-01	RAPSN	ENST00000298854.2,ENST00000529341.1,ENST00000352508.3	chr11	47463374:47463473:47464207:47464366:47469363:47469702,	47464208	47464366	47464340	47464340	Frame_Shift_Del	G	-	p.P186fs
LIHC	TCGA-DD-A39Y-01	KBTBD4	ENST00000533290.1,ENST00000526005.1,ENST00000430070.2,ENST00000395288.2	chr11	47593778:47595342:47597144:47597251:47598962:47599576,	47597145	47597251	47597190	47597190	Frame_Shift_Del	T	-	p.K242fs
LIHC	TCGA-DD-A39Y-01	NDUFS3	ENST00000524568.1,ENST00000263774.4	chr11	47602076:47602174:47602386:47602536:47603639:47603765,	47602387	47602536	47602512	47602512	Frame_Shift_Del	C	-	p.V119fs
LIHC	TCGA-DD-A39Y-01	MTCH2	ENST00000530428.1,ENST00000542981.1,ENST00000302503.3,ENST00000525649.1	chr11	47650504:47650598:47652106:47652166:47652587:47652639,	47652107	47652166	47652110	47652110	Frame_Shift_Del	A	-	p.F179fs
LIHC	TCGA-DD-A39Y-01	AGBL2	ENST00000357610.3,ENST00000528244.1,ENST00000530577.1,ENST00000298861.4,ENST00000529154.1,ENST00000525123.1	chr11	47726094:47726280:47731928:47732063:47735835:47735899,47727415:47727469:47731928:47732063:47735835:47735899,	47731929	47732063	47731972	47731972	Frame_Shift_Del	T	-	p.K63fs
LIHC	TCGA-DD-A39Y-01	FNBP4	ENST00000263773.5	chr11	47738778:47739064:47741480:47741638:47744527:47744868,	47741481	47741638	47741598	47741598	Frame_Shift_Del	T	-	p.K949fs
LIHC	TCGA-DD-A39Y-01	PTPRJ	ENST00000440289.2,ENST00000526550.1,ENST00000418331.2	chr11	48131609:48131628:48134298:48134535:48142554:48142651,	48134299	48134535	48134347	48134347	Frame_Shift_Del	A	-	p.E55fs
LIHC	TCGA-DD-A39Y-01	SLC43A3	ENST00000533235.1,ENST00000529494.1,ENST00000395123.2,ENST00000529112.1,ENST00000529554.1,ENST00000528098.1,ENST00000352187.1,ENST00000525474.1,ENST00000530232.1,ENST00000530005.1,ENST00000533245.1,ENST00000395124.1	chr11	57191454:57191501:57193013:57193143:57193461:57193825,	57193014	57193143	57193097	57193097	Frame_Shift_Del	C	-	p.G77fs
LIHC	TCGA-DD-A39Y-01	SLC43A3	ENST00000528187.1,ENST00000533524.1	chr11	57191454:57191501:57193013:57193182:57193461:57193825,	57193014	57193182	57193097	57193097	Frame_Shift_Del	C	-	p.G77fs
LIHC	TCGA-DD-A39Y-01	SERPING1	ENST00000378323.4	chr11	57365743:57365794:57367336:57367850:57369507:57369642,	57367337	57367850	57367805	57367805	Frame_Shift_Del	T	-	p.F203fs
LIHC	TCGA-DD-A39Y-01	SERPING1	ENST00000378324.2	chr11	57365743:57365794:57367351:57367850:57369507:57369642,57365162:57365195:57367351:57367850:57369507:57369642,	57367352	57367850	57367805	57367805	Frame_Shift_Del	T	-	p.F203fs
LIHC	TCGA-DD-A39Y-01	ZDHHC5	ENST00000529480.1	chr11	57455979:57456137:57457502:57457909:57460082:57460142,	57457503	57457909	57457506	57457506	Frame_Shift_Del	T	-	p.F130fs
LIHC	TCGA-DD-A39Y-01	ZDHHC5	ENST00000529480.1	chr11	57455979:57456137:57457502:57457909:57460082:57460142,	57457503	57457909	57457562	57457562	Frame_Shift_Del	T	-	p.Y148fs
LIHC	TCGA-DD-A39Y-01	CTNND1	ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000531007.1,ENST00000526772.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57577616:57577695:57578870:57578958:57582865:57582953,57577616:57577695:57578870:57578958:57581782:57581845,	57578871	57578958	57578950	57578950	Frame_Shift_Del	A	-	p.Q871fs
LIHC	TCGA-DD-A39Y-01	OSBP	ENST00000263847.1	chr11	59348923:59349027:59361076:59361197:59361482:59361728,	59361077	59361197	59361095	59361095	Frame_Shift_Del	G	-	p.L554fs
LIHC	TCGA-DD-A39Y-01	OSBP	ENST00000525357.1,ENST00000263847.1	chr11	59361482:59361728:59367968:59368100:59368291:59368329,	59367969	59368100	59367975	59367975	Frame_Shift_Del	G	-	p.P435fs
LIHC	TCGA-DD-A39Y-01	MS4A4A	ENST00000532114.1,ENST00000337908.4,ENST00000355131.3,ENST00000529950.1,ENST00000343968.4,ENST00000395016.3	chr11	60059697:60059857:60064669:60064798:60068473:60068530,	60064670	60064798	60064785	60064785	Frame_Shift_Del	G	-	p.W87fs
LIHC	TCGA-DD-A39Y-01	MS4A7	ENST00000300184.3	chr11	60150601:60150761:60152560:60152695:60154189:60154246,	60152561	60152695	60152678	60152678	Frame_Shift_Del	T	-	p.F89fs
LIHC	TCGA-DD-A39Y-01	MS4A1	ENST00000532073.1	chr11	60231760:60231817:60233393:60233630:60234431:60234533,60231760:60231817:60233393:60233630:60234470:60234533,	60233394	60233630	60233402	60233402	Frame_Shift_Del	A	-	p.G115fs
LIHC	TCGA-DD-A39Y-01	MS4A1	ENST00000532073.1	chr11	60231760:60231817:60233393:60233630:60234431:60234533,60231760:60231817:60233393:60233630:60234470:60234533,	60233394	60233630	60233571	60233571	Frame_Shift_Del	C	-	p.P172fs
LIHC	TCGA-DD-A39Y-01	TMEM132A	ENST00000005286.4,ENST00000453848.2	chr11	60701013:60701216:60701959:60702236:60702723:60702819,	60701960	60702236	60702219	60702219	Frame_Shift_Del	G	-	p.G608fs
LIHC	TCGA-DD-A39Y-01	SLC15A3	ENST00000227880.3,ENST00000541505.1	chr11	60711160:60711308:60714003:60714293:60718465:60718838,	60714004	60714293	60714127	60714127	Frame_Shift_Del	A	-	p.F242fs
LIHC	TCGA-DD-A39Y-01	CD5	ENST00000347785.3	chr11	60889082:60889376:60890378:60890504:60891355:60891409,	60890379	60890504	60890473	60890473	Frame_Shift_Del	C	-	p.G398fs
LIHC	TCGA-DD-A39Y-01	DDB1	ENST00000540166.1,ENST00000539332.1,ENST00000450997.2,ENST00000301764.7	chr11	61071336:61071507:61076454:61076549:61077267:61077432,	61076455	61076549	61076525	61076525	Frame_Shift_Del	T	-	p.K864fs
LIHC	TCGA-DD-A39Y-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093160	61093160	Frame_Shift_Del	C	-	p.A229fs
LIHC	TCGA-DD-A39Y-01	CPSF7	ENST00000394888.4,ENST00000448745.1,ENST00000340437.4,ENST00000439958.3	chr11	61171890:61172176:61178409:61178577:61179240:61179409,	61178410	61178577	61178429	61178429	Frame_Shift_Del	C	-	p.D511fs
LIHC	TCGA-DD-A39Y-01	MYRF	ENST00000278836.5,ENST00000265460.5	chr11	61536731:61536793:61537717:61537997:61538971:61539222,	61537718	61537997	61537896	61537896	Frame_Shift_Del	C	-	p.I213fs
LIHC	TCGA-DD-A39Y-01	FADS1	ENST00000424501.1	chr11	61580060:61580140:61580714:61580825:61584026:61584074,	61580715	61580825	61580794	61580794	Frame_Shift_Del	C	-	p.G136fs
LIHC	TCGA-DD-A39Y-01	BEST1	ENST00000526988.1	chr11	61722814:61722859:61723189:61723423:61724315:61724338,	61723190	61723423	61723395	61723395	Frame_Shift_Del	C	-	p.F91fs
LIHC	TCGA-DD-A39Y-01	FTH1	ENST00000533138.1	chr11	61732309:61732363:61732458:61732987:61734783:61734843,	61732459	61732987	61732461	61732461	Frame_Shift_Del	G	-	p.H129fs
LIHC	TCGA-DD-A39Y-01	FTH1	ENST00000526640.1,ENST00000534180.1,ENST00000273550.7,ENST00000532601.1	chr11	61732309:61732363:61732458:61732584:61732840:61732857,	61732459	61732584	61732461	61732461	Frame_Shift_Del	G	-	p.H129fs
LIHC	TCGA-DD-A39Y-01	FTH1	ENST00000532829.1	chr11	61732309:61732363:61732458:61732577:61732840:61732857,	61732459	61732577	61732461	61732461	Frame_Shift_Del	G	-	p.H129fs
LIHC	TCGA-DD-A39Y-01	INCENP	ENST00000528037.1,ENST00000394818.3,ENST00000278849.4	chr11	61896241:61896355:61897253:61898062:61905303:61905355,	61897254	61898062	61898000	61898000	Frame_Shift_Del	G	-	p.R334fs
LIHC	TCGA-DD-A39Y-01	ASRGL1	ENST00000415229.2,ENST00000301776.5	chr11	62156604:62156723:62158993:62159104:62159550:62160040,	62158994	62159104	62159047	62159047	Frame_Shift_Del	G	-	p.G222fs
LIHC	TCGA-DD-A39Y-01	MTA2	ENST00000524902.1,ENST00000278823.2,ENST00000527204.1	chr11	62363750:62363809:62363929:62364004:62364108:62364297,	62363930	62364004	62363968	62363968	Frame_Shift_Del	A	-	p.Y308fs
LIHC	TCGA-DD-A39Y-01	GANAB	ENST00000525994.1,ENST00000534613.1,ENST00000346178.4,ENST00000534779.1	chr11	62400916:62400986:62401781:62401847:62402292:62402472,	62401782	62401847	62401788	62401788	Frame_Shift_Del	A	-	p.F207fs
LIHC	TCGA-DD-A39Y-01	GANAB	ENST00000529737.1	chr11	62406830:62406939:62407102:62407203:62414033:62414074,	62407103	62407203	62407158	62407158	Frame_Shift_Del	C	-	p.G28fs
LIHC	TCGA-DD-A39Y-01	GANAB	ENST00000346178.4,ENST00000356638.3	chr11	62406830:62406939:62407098:62407203:62414033:62414074,	62407099	62407203	62407158	62407158	Frame_Shift_Del	C	-	p.G28fs
LIHC	TCGA-DD-A39Y-01	UBXN1	ENST00000528907.1,ENST00000294119.2,ENST00000533476.1,ENST00000532904.1,ENST00000526919.1,ENST00000436354.2,ENST00000533908.1,ENST00000534176.1,ENST00000529640.1,ENST00000527421.1,ENST00000524762.1,ENST00000301935.5,ENST00000525717.1	chr11	62445810:62445880:62445966:62446073:62446161:62446215,	62445967	62446073	62446058	62446058	Frame_Shift_Del	T	-	p.E43fs
LIHC	TCGA-DD-A39Y-01	POLR2G	ENST00000301788.7,ENST00000527435.1,ENST00000533442.1	chr11	62529266:62529376:62530338:62530498:62532653:62532704,	62530339	62530498	62530460	62530460	Frame_Shift_Del	G	-	p.G82fs
LIHC	TCGA-DD-A39Y-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63059011:63059115:63064774:63064929:63065030:63065199,	63064775	63064929	63064861	63064861	Frame_Shift_Del	T	-	p.V43fs
LIHC	TCGA-DD-A39Y-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072237	63072237	Frame_Shift_Del	T	-	p.F493fs
LIHC	TCGA-DD-A39Y-01	SLC22A9	ENST00000279178.3,ENST00000536333.1,ENST00000310969.4	chr11	63143116:63143240:63149630:63149749:63173968:63174183,	63149631	63149749	63149649	63149649	Frame_Shift_Del	A	-	p.K326fs
LIHC	TCGA-DD-A39Y-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63487019	63487019	Frame_Shift_Del	A	-	p.K349fs
LIHC	TCGA-DD-A39Y-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63487019	63487019	Frame_Shift_Del	A	-	p.K349fs
LIHC	TCGA-DD-A39Y-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63487802	63487802	Frame_Shift_Del	A	-	p.K610fs
LIHC	TCGA-DD-A39Y-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63487802	63487802	Frame_Shift_Del	A	-	p.K610fs
LIHC	TCGA-DD-A39Y-01	TRPT1	ENST00000394546.2,ENST00000545812.1	chr11	63992125:63992189:63992266:63992442:63992970:63993052,	63992267	63992442	63992318	63992318	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A39Y-01	TRPT1	ENST00000539595.1,ENST00000536234.1,ENST00000539436.1	chr11	63992125:63992189:63992272:63993052:63993257:63993341,	63992273	63993052	63992318	63992318	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A39Y-01	TRPT1	ENST00000317459.6,ENST00000541278.1,ENST00000394547.3,ENST00000546089.1	chr11	63992125:63992189:63992272:63992442:63992970:63993052,	63992273	63992442	63992318	63992318	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A39Y-01	DNAJC4	ENST00000321685.3,ENST00000535246.1	chr11	63999981:64000086:64000175:64000337:64001365:64001452,	64000176	64000337	64000186	64000186	Frame_Shift_Del	C	-	p.P127fs
LIHC	TCGA-DD-A39Y-01	DNAJC4	ENST00000321460.5	chr11	63999981:64000086:64000172:64000337:64001365:64001452,	64000173	64000337	64000186	64000186	Frame_Shift_Del	C	-	p.P127fs
LIHC	TCGA-DD-A39Y-01	VEGFB	ENST00000309422.2	chr11	64004671:64004694:64004891:64005127:64005827:64006247,	64004892	64005127	64004963	64004963	Frame_Shift_Del	C	-	p.S161fs
LIHC	TCGA-DD-A39Y-01	GPR137	ENST00000438980.2,ENST00000539851.1,ENST00000313074.3,ENST00000411458.1	chr11	64055381:64055418:64055536:64055686:64055811:64055940,	64055537	64055686	64055607	64055607	Frame_Shift_Del	A	-	p.Y235fs
LIHC	TCGA-DD-A39Y-01	KCNK4	ENST00000422670.2	chr11	64059203:64059257:64060413:64060679:64064349:64064473,64058891:64059038:64060413:64060679:64064349:64064473,	64060414	64060679	64060607	64060607	Frame_Shift_Del	G	-	p.L39fs
LIHC	TCGA-DD-A39Y-01	TRMT112	ENST00000539854.1,ENST00000544844.1	chr11	64084529:64084619:64084735:64084837:64084920:64085025,	64084736	64084837	64084799	64084799	Frame_Shift_Del	G	-	p.P39fs
LIHC	TCGA-DD-A39Y-01	RPS6KA4	ENST00000528057.1,ENST00000532885.1,ENST00000334205.4,ENST00000528355.1,ENST00000530504.1,ENST00000294261.4	chr11	64129378:64129474:64132772:64132937:64135603:64135648,	64132773	64132937	64132781	64132781	Frame_Shift_Del	T	-	p.D305fs
LIHC	TCGA-DD-A39Y-01	SLC22A11	ENST00000377581.3,ENST00000301891.4	chr11	64332693:64332809:64335070:64335285:64336141:64336250,	64335071	64335285	64335210	64335210	Frame_Shift_Del	G	-	p.G400fs
LIHC	TCGA-DD-A39Y-01	SLC22A12	ENST00000377574.1	chr11	64360250:64360354:64360876:64361031:64361106:64361275,	64360877	64361031	64360992	64360992	Frame_Shift_Del	T	-	p.F208fs
LIHC	TCGA-DD-A39Y-01	NRXN2	ENST00000377559.3	chr11	64387765:64387844:64390224:64390550:64393934:64394024,64387765:64387844:64390224:64390550:64397873:64398045,	64390225	64390550	64390411	64390411	Frame_Shift_Del	G	-	p.P1329fs
LIHC	TCGA-DD-A39Y-01	MAP4K2	ENST00000468062.1,ENST00000377350.3,ENST00000435926.1,ENST00000493428.1,ENST00000294066.2	chr11	64568235:64568298:64568371:64568503:64568582:64568655,	64568372	64568503	64568432	64568432	Frame_Shift_Del	C	-	p.G201fs
LIHC	TCGA-DD-A39Y-01	CDC42BPG	ENST00000342711.5	chr11	64600391:64600431:64600702:64600808:64601071:64601131,	64600703	64600808	64600726	64600726	Frame_Shift_Del	C	-	p.G903fs
LIHC	TCGA-DD-A39Y-01	EHD1	ENST00000359393.2,ENST00000320631.3,ENST00000433803.1,ENST00000421510.1	chr11	64622793:64622958:64627395:64627808:64641892:64641990,	64627396	64627808	64627570	64627570	Frame_Shift_Del	G	-	p.P247fs
LIHC	TCGA-DD-A39Y-01	ZFPL1	ENST00000526945.1,ENST00000532200.1,ENST00000526334.1,ENST00000294258.3	chr11	64852624:64852698:64853886:64854080:64854191:64854256,	64853887	64854080	64854058	64854058	Frame_Shift_Del	G	-	p.R129fs
LIHC	TCGA-DD-A39Y-01	POLA2	ENST00000527850.1,ENST00000532469.1,ENST00000265465.3,ENST00000532391.1,ENST00000541089.1	chr11	65036142:65036200:65043362:65043469:65046200:65046297,	65043363	65043469	65043397	65043397	Frame_Shift_Del	C	-	p.T130fs
LIHC	TCGA-DD-A39Y-01	DPF2	ENST00000530993.1,ENST00000528416.1,ENST00000532264.1,ENST00000252268.4	chr11	65108436:65108544:65108869:65109033:65111215:65111308,	65108870	65109033	65108974	65108974	Frame_Shift_Del	C	-	p.P136fs
LIHC	TCGA-DD-A39Y-01	SCYL1	ENST00000279270.6,ENST00000524944.1,ENST00000533862.1,ENST00000270176.5,ENST00000420247.2,ENST00000525364.1,ENST00000527009.1	chr11	65293395:65293514:65293594:65293821:65294253:65294344,	65293595	65293821	65293774	65293774	Frame_Shift_Del	C	-	p.D185fs
LIHC	TCGA-DD-A39Y-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65350605	65350605	Frame_Shift_Del	C	-	p.T821fs
LIHC	TCGA-DD-A39Y-01	EHBP1L1	ENST00000309295.4	chr11	65357221:65357291:65357406:65357462:65357557:65357676,	65357407	65357462	65357441	65357441	Frame_Shift_Del	C	-	p.S1346fs
LIHC	TCGA-DD-A39Y-01	MAP3K11	ENST00000524848.1,ENST00000530153.1,ENST00000309100.3,ENST00000532507.1	chr11	65366921:65367239:65373231:65373323:65373416:65373552,	65373232	65373323	65373266	65373266	Frame_Shift_Del	G	-	p.P599fs
LIHC	TCGA-DD-A39Y-01	MAP3K11	ENST00000524848.1,ENST00000530153.1,ENST00000309100.3	chr11	65373416:65373552:65374161:65374275:65374740:65374984,	65374162	65374275	65374180	65374180	Frame_Shift_Del	G	-	p.R529fs
LIHC	TCGA-DD-A39Y-01	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000394227.3,ENST00000527525.1	chr11	65414854:65415129:65416732:65416951:65417031:65417143,	65416733	65416951	65416736	65416736	Frame_Shift_Del	T	-	p.S770fs
LIHC	TCGA-DD-A39Y-01	RELA	ENST00000529389.1,ENST00000406246.3,ENST00000532999.1,ENST00000531484.1,ENST00000308639.9,ENST00000525693.1	chr11	65423327:65423406:65425757:65425970:65426188:65426293,	65425758	65425970	65425855	65425855	Frame_Shift_Del	G	-	p.P260fs
LIHC	TCGA-DD-A39Y-01	EFEMP2	ENST00000532084.1,ENST00000526628.1,ENST00000531005.1,ENST00000531972.1,ENST00000307998.6,ENST00000528176.1	chr11	65635360:65635527:65635765:65635892:65635980:65636007,	65635766	65635892	65635845	65635845	Frame_Shift_Del	T	-	p.T299fs
LIHC	TCGA-DD-A39Y-01	EFEMP2	ENST00000527969.1	chr11	65637327:65637447:65637591:65638129:65638627:65638673,	65637592	65638129	65638042	65638042	Frame_Shift_Del	G	-	p.P152fs
LIHC	TCGA-DD-A39Y-01	EFEMP2	ENST00000531972.1,ENST00000530850.1,ENST00000307998.6,ENST00000527378.1,ENST00000528176.1,ENST00000526624.1,ENST00000533347.1	chr11	65637686:65637708:65638006:65638129:65638627:65638673,	65638007	65638129	65638042	65638042	Frame_Shift_Del	G	-	p.P152fs
LIHC	TCGA-DD-A39Y-01	DRAP1	ENST00000376991.2	chr11	65687886:65687933:65688018:65688133:65688354:65688443,	65688019	65688133	65688068	65688068	Frame_Shift_Del	A	-	p.K120fs
LIHC	TCGA-DD-A39Y-01	DRAP1	ENST00000312515.2,ENST00000531121.1,ENST00000527119.1,ENST00000532933.1,ENST00000534333.1,ENST00000525501.1	chr11	65687886:65687933:65688039:65688133:65688354:65688443,	65688040	65688133	65688068	65688068	Frame_Shift_Del	A	-	p.K120fs
LIHC	TCGA-DD-A39Y-01	SART1	ENST00000312397.5,ENST00000533386.1	chr11	65744484:65744572:65745033:65745124:65745234:65745370,	65745034	65745124	65745076	65745076	Frame_Shift_Del	C	-	p.A663fs
LIHC	TCGA-DD-A39Y-01	SF3B2	ENST00000530981.1,ENST00000528302.1,ENST00000322535.6	chr11	65829156:65829246:65829361:65829469:65830479:65830587,	65829362	65829469	65829416	65829416	Frame_Shift_Del	C	-	p.P626fs
LIHC	TCGA-DD-A39Y-01	KLC2	ENST00000440228.2,ENST00000475757.2,ENST00000394078.1,ENST00000394067.2,ENST00000316924.5,ENST00000417856.1	chr11	66026054:66026293:66029212:66029443:66029593:66029632,	66029213	66029443	66029239	66029239	Frame_Shift_Del	G	-	p.L85fs
LIHC	TCGA-DD-A39Y-01	CNIH2	ENST00000528852.1,ENST00000530519.1,ENST00000311445.6	chr11	66049729:66049798:66050203:66050251:66050505:66050618,	66050204	66050251	66050215	66050215	Frame_Shift_Del	A	-	p.L54fs
LIHC	TCGA-DD-A39Y-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
LIHC	TCGA-DD-A39Y-01	YIF1A	ENST00000376899.4,ENST00000528575.1,ENST00000431556.2,ENST00000359461.6,ENST00000376901.4	chr11	66055068:66055147:66055551:66055763:66056425:66056478,66055282:66055387:66055551:66055763:66056425:66056478,	66055552	66055763	66055554	66055554	Frame_Shift_Del	C	-	p.E81fs
LIHC	TCGA-DD-A39Y-01	MRPL11	ENST00000430466.2	chr11	66204820:66204914:66205634:66205730:66206180:66206319,	66205635	66205730	66205721	66205721	Frame_Shift_Del	A	-	p.S45fs
LIHC	TCGA-DD-A39Y-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66367027	66367027	Frame_Shift_Del	G	-	p.E116fs
LIHC	TCGA-DD-A39Y-01	RBM4B	ENST00000310046.4	chr11	66433018:66433049:66436085:66436762:66444138:66444562,	66436086	66436762	66436133	66436133	Frame_Shift_Del	C	-	p.E348fs
LIHC	TCGA-DD-A39Y-01	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66457509:66457754:66458754:66459129:66460006:66460211,	66458755	66459129	66458757	66458757	Frame_Shift_Del	G	-	p.Q1855fs
LIHC	TCGA-DD-A39Y-01	RHOD	ENST00000308831.2	chr11	66833366:66833454:66834208:66834318:66837895:66838030,	66834209	66834318	66834235	66834235	Frame_Shift_Del	C	-	p.P83fs
LIHC	TCGA-DD-A39Y-01	ANKRD13D	ENST00000511455.2,ENST00000308440.6,ENST00000514166.1,ENST00000506531.1,ENST00000512231.1,ENST00000504186.1,ENST00000447274.2	chr11	67067000:67067082:67067297:67067359:67067463:67067505,	67067298	67067359	67067309	67067309	Frame_Shift_Del	C	-	p.P211fs
LIHC	TCGA-DD-A39Y-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67167031:67167136:67168159:67168390:67168538:67168670,	67168160	67168390	67168304	67168304	Frame_Shift_Del	C	-	p.D92fs
LIHC	TCGA-DD-A39Y-01	PPP1CA	ENST00000376745.4,ENST00000527663.1	chr11	67168329:67168390:67168538:67168670:67169198:67169259,	67168539	67168670	67168588	67168588	Frame_Shift_Del	A	-	p.F46fs
LIHC	TCGA-DD-A39Y-01	CORO1B	ENST00000393893.1,ENST00000341356.5	chr11	67207701:67207734:67207805:67207910:67208595:67208715,	67207806	67207910	67207859	67207859	Frame_Shift_Del	C	-	p.A270fs
LIHC	TCGA-DD-A39Y-01	PITPNM1	ENST00000534749.1,ENST00000356404.3	chr11	67263648:67263816:67264701:67264907:67264992:67265150,67263648:67263819:67264701:67264907:67264992:67265150,	67264702	67264907	67264867	67264867	Frame_Shift_Del	G	-	p.R662fs
LIHC	TCGA-DD-A39Y-01	TCIRG1	ENST00000533947.1	chr11	67810109:67810330:67810412:67810964:67811037:67811057,	67810413	67810964	67810465	67810465	Frame_Shift_Del	C	-	p.A157fs
LIHC	TCGA-DD-A39Y-01	TCIRG1	ENST00000534673.1	chr11	67810109:67810330:67810412:67810498:67811037:67811057,	67810413	67810498	67810465	67810465	Frame_Shift_Del	C	-	p.A157fs
LIHC	TCGA-DD-A39Y-01	TCIRG1	ENST00000533947.1	chr11	67810109:67810330:67810412:67810964:67811037:67811057,	67810413	67810964	67810470	67810470	Frame_Shift_Del	G	-	p.G160fs
LIHC	TCGA-DD-A39Y-01	TCIRG1	ENST00000534673.1	chr11	67810109:67810330:67810412:67810498:67811037:67811057,	67810413	67810498	67810470	67810470	Frame_Shift_Del	G	-	p.G160fs
LIHC	TCGA-DD-A39Y-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68131288:68131411:68133038:68133170:68153783:68154180,	68133039	68133170	68133124	68133124	Frame_Shift_Del	C	-	p.C323fs
LIHC	TCGA-DD-A39Y-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68201069:68201306:68204356:68204467:68205913:68206076,	68204357	68204467	68204368	68204368	Frame_Shift_Del	C	-	p.P1338fs
LIHC	TCGA-DD-A39Y-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68201069:68201306:68204356:68204467:68205913:68206076,	68204357	68204467	68204430	68204430	Frame_Shift_Del	C	-	p.F1358fs
LIHC	TCGA-DD-A39Y-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000531244.1,ENST00000265636.5,ENST00000529172.1,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68287102:68287119:68312305:68312492:68315534:68315656,68305283:68305359:68312305:68312492:68315534:68315672,	68312306	68312492	68312444	68312444	Frame_Shift_Del	T	-	p.S122fs
LIHC	TCGA-DD-A39Y-01	PPP6R3	ENST00000529710.1,ENST00000265637.4,ENST00000524904.1,ENST00000265636.5,ENST00000524845.1,ENST00000393800.2,ENST00000393801.3,ENST00000393799.2,ENST00000527403.2	chr11	68318588:68318654:68321612:68321725:68326033:68326147,	68321613	68321725	68321697	68321697	Frame_Shift_Del	C	-	p.P235fs
LIHC	TCGA-DD-A39Y-01	MRPL21	ENST00000565125.1,ENST00000541279.1	chr11	68660436:68660461:68660789:68660923:68663982:68664146,	68660790	68660923	68660914	68660914	Frame_Shift_Del	C	-	p.V51fs
LIHC	TCGA-DD-A39Y-01	MRPL21	ENST00000362034.2,ENST00000567045.1,ENST00000450904.2,ENST00000544567.1	chr11	68660436:68660461:68660870:68660923:68663982:68664146,	68660871	68660923	68660914	68660914	Frame_Shift_Del	C	-	p.V51fs
LIHC	TCGA-DD-A39Y-01	CCND1	ENST00000227507.2	chr11	69457798:69458014:69458599:69458759:69462761:69462910,	69458600	69458759	69458617	69458617	Frame_Shift_Del	G	-	p.L144fs
LIHC	TCGA-DD-A39Y-01	ANO1	ENST00000531349.1,ENST00000398543.2,ENST00000355303.5,ENST00000530480.1,ENST00000316296.5,ENST00000538023.1,ENST00000530676.1	chr11	69970455:69970520:69972166:69972301:69978024:69978139,	69972167	69972301	69972173	69972173	Frame_Shift_Del	T	-	p.Y323fs
LIHC	TCGA-DD-A39Y-01	ANO1	ENST00000530676.1	chr11	70031695:70031801:70033843:70034203:70035174:70035358,	70033844	70034203	70033956	70033956	Frame_Shift_Del	G	-	p.R936fs
LIHC	TCGA-DD-A39Y-01	PPFIA1	ENST00000526262.1,ENST00000389547.3,ENST00000532443.1,ENST00000530798.1,ENST00000532504.1,ENST00000253925.7	chr11	70181718:70181800:70183470:70183533:70184479:70184540,	70183471	70183533	70183500	70183500	Frame_Shift_Del	A	-	p.A486fs
LIHC	TCGA-DD-A39Y-01	PPFIA1	ENST00000527612.1,ENST00000528750.1,ENST00000526262.1,ENST00000389547.3,ENST00000532504.1,ENST00000253925.7,ENST00000530390.1	chr11	70201744:70201917:70202266:70202360:70208200:70208281,	70202267	70202360	70202322	70202322	Frame_Shift_Del	G	-	p.L848fs
LIHC	TCGA-DD-A39Y-01	PPFIA1	ENST00000526262.1,ENST00000530548.1,ENST00000532504.1,ENST00000253925.7,ENST00000531657.1	chr11	70222637:70222706:70224135:70224301:70228193:70228264,	70224136	70224301	70224174	70224174	Frame_Shift_Del	A	-	p.R1141fs
LIHC	TCGA-DD-A39Y-01	CTTN	ENST00000376561.3,ENST00000301843.8,ENST00000529736.1,ENST00000533931.1,ENST00000538675.1,ENST00000393747.2,ENST00000346329.3	chr11	70275227:70275305:70277296:70277386:70279206:70279384,	70277297	70277386	70277324	70277324	Frame_Shift_Del	C	-	p.P403fs
LIHC	TCGA-DD-A39Y-01	FAM86C1	ENST00000528685.1	chr11	71500828:71500891:71507062:71507354:71510606:71511145,	71507063	71507354	71507218	71507218	Frame_Shift_Del	C	-	p.S105fs
LIHC	TCGA-DD-A39Y-01	IL18BP	ENST00000534583.1	chr11	71712450:71712598:71712829:71712994:71713598:71713743,	71712830	71712994	71712851	71712851	Frame_Shift_Del	C	-	p.P178fs
LIHC	TCGA-DD-A39Y-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726125	71726125	Frame_Shift_Del	T	-	p.K808fs
LIHC	TCGA-DD-A39Y-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71727069	71727069	Frame_Shift_Del	C	-	p.A494fs
LIHC	TCGA-DD-A39Y-01	ANAPC15	ENST00000545944.1	chr11	71821635:71821649:71822202:71822332:71823695:71823732,	71822203	71822332	71822305	71822305	Frame_Shift_Del	G	-	p.P6fs
LIHC	TCGA-DD-A39Y-01	CLPB	ENST00000437826.2,ENST00000535990.1,ENST00000538021.1,ENST00000538039.1,ENST00000340729.5,ENST00000543042.1,ENST00000294053.3	chr11	72005065:72005170:72005368:72005488:72005663:72005737,	72005369	72005488	72005390	72005390	Frame_Shift_Del	T	-	p.E583fs
LIHC	TCGA-DD-A39Y-01	PDE2A	ENST00000334456.5,ENST00000441209.2,ENST00000540345.1,ENST00000418754.2,ENST00000376450.3,ENST00000539367.1,ENST00000444035.2,ENST00000544570.1	chr11	72293487:72293610:72294481:72294559:72295244:72295357,	72294482	72294559	72294542	72294542	Frame_Shift_Del	T	-	p.K556fs
LIHC	TCGA-DD-A39Y-01	PDE2A	ENST00000334456.5,ENST00000540345.1,ENST00000376450.3,ENST00000444035.2,ENST00000544570.1,ENST00000536308.1	chr11	72316242:72316270:72319705:72319795:72342121:72342183,72316242:72316270:72319705:72319795:72353297:72353370,	72319706	72319795	72319711	72319711	Frame_Shift_Del	G	-	p.R77fs
LIHC	TCGA-DD-A39Y-01	ARAP1	ENST00000541623.1	chr11	72397139:72397236:72398483:72398783:72399499:72399526,	72398484	72398783	72398775	72398775	Frame_Shift_Del	A	-	p.F1349fs
LIHC	TCGA-DD-A39Y-01	RELT	ENST00000544075.1	chr11	73087452:73087544:73100156:73100226:73101595:73101670,	73100157	73100226	73100206	73100206	Frame_Shift_Del	C	-	p.P9fs
LIHC	TCGA-DD-A39Y-01	FAM168A	ENST00000450446.2	chr11	73117027:73117789:73118557:73118688:73120531:73120706,73117027:73117789:73118557:73118688:73130918:73131044,	73118558	73118688	73118607	73118607	Frame_Shift_Del	G	-	p.P235fs
LIHC	TCGA-DD-A39Y-01	RAB6A	ENST00000336083.3,ENST00000537446.1,ENST00000545625.1,ENST00000400470.2,ENST00000541588.1	chr11	73431890:73431944:73441809:73441868:73471610:73471655,	73441810	73441868	73441825	73441825	Frame_Shift_Del	A	-	p.F38fs
LIHC	TCGA-DD-A39Y-01	UCP2	ENST00000310473.3,ENST00000536983.1	chr11	73687867:73688062:73688930:73689141:73689297:73689522,	73688931	73689141	73689042	73689042	Frame_Shift_Del	G	-	p.R76fs
LIHC	TCGA-DD-A39Y-01	C2CD3	ENST00000542484.1	chr11	73765651:73765716:73768450:73768589:73785297:73785645,73765651:73765716:73768450:73768589:73781550:73781914,	73768451	73768589	73768490	73768490	Frame_Shift_Del	T	-	p.N1684fs
LIHC	TCGA-DD-A39Y-01	C2CD3	ENST00000542484.1	chr11	73765651:73765716:73768450:73768589:73785297:73785645,73765651:73765716:73768450:73768589:73781550:73781914,	73768451	73768589	73768580	73768580	Frame_Shift_Del	A	-	p.L1654fs
LIHC	TCGA-DD-A39Y-01	XRRA1	ENST00000527087.1	chr11	74574025:74574066:74617283:74617501:74618189:74618266,74563078:74563127:74617283:74617501:74618189:74618266,74562132:74562248:74617283:74617501:74618189:74618266,	74617284	74617501	74617475	74617475	Frame_Shift_Del	T	-	p.N263fs
LIHC	TCGA-DD-A39Y-01	ARRB1	ENST00000532525.1,ENST00000360025.3,ENST00000393505.4,ENST00000532447.1,ENST00000420843.2	chr11	74985243:74985255:74987882:74987955:74988407:74988492,	74987883	74987955	74987928	74987928	Frame_Shift_Del	A	-	p.F244fs
LIHC	TCGA-DD-A39Y-01	GDPD5	ENST00000527820.1,ENST00000376282.3,ENST00000336898.3,ENST00000443276.2,ENST00000533784.1,ENST00000533805.1,ENST00000529721.1,ENST00000526177.1	chr11	75152734:75152848:75153407:75153626:75154180:75154331,	75153408	75153626	75153485	75153485	Frame_Shift_Del	G	-	p.R226fs
LIHC	TCGA-DD-A39Y-01	UVRAG	ENST00000356136.3,ENST00000528420.1,ENST00000533454.1,ENST00000532130.1,ENST00000531818.1,ENST00000539288.1	chr11	75715048:75715133:75718577:75718665:75719850:75719911,	75718578	75718665	75718649	75718649	Frame_Shift_Del	T	-	p.I328fs
LIHC	TCGA-DD-A39Y-01	UVRAG	ENST00000356136.3,ENST00000528420.1,ENST00000533454.1,ENST00000532130.1,ENST00000531818.1,ENST00000539288.1	chr11	75727858:75728024:75776753:75776832:75826967:75827059,	75776754	75776832	75776791	75776791	Frame_Shift_Del	T	-	p.F422fs
LIHC	TCGA-DD-A39Y-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76371356	76371356	Frame_Shift_Del	C	-	p.G427fs
LIHC	TCGA-DD-A39Y-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76371429	76371429	Frame_Shift_Del	G	-	p.P403fs
LIHC	TCGA-DD-A39Y-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1	chr11	76841634:76841698:76853754:76853868:76858843:76858996,	76853755	76853868	76853782	76853782	Frame_Shift_Del	T	-	p.L16fs
LIHC	TCGA-DD-A39Y-01	CLNS1A	ENST00000532069.1	chr11	77330650:77330740:77333544:77333718:77336007:77336076,77330650:77330740:77333544:77333718:77340807:77340944,	77333545	77333718	77333678	77333678	Frame_Shift_Del	T	-	p.E172fs
LIHC	TCGA-DD-A39Y-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412004	77412004	Frame_Shift_Del	T	-	p.N757fs
LIHC	TCGA-DD-A39Y-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412043	77412043	Frame_Shift_Del	T	-	p.K745fs
LIHC	TCGA-DD-A39Y-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412285	77412285	Frame_Shift_Del	T	-	p.K663fs
LIHC	TCGA-DD-A39Y-01	RSF1	ENST00000308488.6,ENST00000528095.1,ENST00000360355.2	chr11	77413445:77413540:77436589:77436744:77451775:77451981,	77436590	77436744	77436676	77436676	Frame_Shift_Del	T	-	p.N216fs
LIHC	TCGA-DD-A39Y-01	AAMDC	ENST00000393427.2,ENST00000526164.1	chr11	77532200:77532287:77553524:77553674:77580767:77580863,	77553525	77553674	77553574	77553574	Frame_Shift_Del	G	-	p.W11fs
LIHC	TCGA-DD-A39Y-01	USP35	ENST00000530546.1,ENST00000529308.1,ENST00000526425.1,ENST00000441408.2,ENST00000528910.1	chr11	77911178:77911280:77911695:77911854:77916887:77917081,	77911696	77911854	77911701	77911701	Frame_Shift_Del	C	-	p.L348fs
LIHC	TCGA-DD-A39Y-01	GAB2	ENST00000340149.2,ENST00000361507.4	chr11	77938002:77938097:77961202:77961446:77991646:77991947,	77961203	77961446	77961299	77961299	Frame_Shift_Del	G	-	p.P175fs
LIHC	TCGA-DD-A39Y-01	PCF11	ENST00000298281.4	chr11	82879469:82881037:82882859:82882956:82888126:82888246,	82882860	82882956	82882927	82882927	Frame_Shift_Del	A	-	p.Q1243fs
LIHC	TCGA-DD-A39Y-01	TMEM126B	ENST00000526822.1	chr11	85342730:85342852:85345129:85345323:85346710:85346804,85339673:85339732:85345129:85345323:85346710:85346804,	85345130	85345323	85345297	85345297	Frame_Shift_Del	T	-	p.L124fs
LIHC	TCGA-DD-A39Y-01	SYTL2	ENST00000525423.1,ENST00000525702.1,ENST00000359152.5,ENST00000389958.3,ENST00000389959.4,ENST00000527523.1,ENST00000354566.3,ENST00000528231.1,ENST00000316356.4,ENST00000529581.1,ENST00000524452.1,ENST00000389960.4,ENST00000532995.1,ENST00000530351.1,ENST00000533892.1	chr11	85411557:85411636:85415900:85416071:85418471:85418574,	85415901	85416071	85416057	85416057	Frame_Shift_Del	T	-	p.K1552fs
LIHC	TCGA-DD-A39Y-01	SYTL2	ENST00000525423.1,ENST00000525702.1,ENST00000359152.5,ENST00000533057.1,ENST00000389958.3,ENST00000389959.4,ENST00000527523.1,ENST00000354566.3,ENST00000528231.1,ENST00000316356.4,ENST00000529581.1,ENST00000524452.1,ENST00000527794.1,ENST00000389960.4,ENST00000530351.1,ENST00000529534.1,ENST00000533892.1	chr11	85416034:85416071:85418471:85418574:85420373:85420420,	85418472	85418574	85418522	85418522	Frame_Shift_Del	T	-	p.T1531fs
LIHC	TCGA-DD-A39Y-01	SYTL2	ENST00000533057.1	chr11	85418471:85418574:85420373:85420420:85425455:85425492,	85420374	85420420	85420388	85420388	Frame_Shift_Del	T	-	p.K1508fs
LIHC	TCGA-DD-A39Y-01	SYTL2	ENST00000524452.1,ENST00000527794.1,ENST00000389960.4,ENST00000530351.1,ENST00000533892.1	chr11	85418471:85418574:85420373:85420543:85425455:85425492,	85420374	85420543	85420388	85420388	Frame_Shift_Del	T	-	p.K1508fs
LIHC	TCGA-DD-A39Y-01	CCDC83	ENST00000526729.1,ENST00000376067.1	chr11	85584273:85584338:85593555:85593718:85606335:85606427,	85593556	85593718	85593622	85593622	Frame_Shift_Del	A	-	p.K83fs
LIHC	TCGA-DD-A39Y-01	PICALM	ENST00000532317.1,ENST00000525162.1,ENST00000356360.5,ENST00000528256.1,ENST00000526033.1,ENST00000528398.1,ENST00000531930.1,ENST00000393346.3	chr11	85733420:85733512:85737333:85737409:85742510:85742653,	85737334	85737409	85737346	85737346	Frame_Shift_Del	T	-	p.S113fs
LIHC	TCGA-DD-A39Y-01	ME3	ENST00000530520.1,ENST00000359636.2,ENST00000393324.3,ENST00000543262.1,ENST00000526504.1,ENST00000323418.6,ENST00000524826.1	chr11	86198378:86198482:86209004:86209166:86219833:86219909,	86209005	86209166	86209079	86209079	Frame_Shift_Del	G	-	p.L211fs
LIHC	TCGA-DD-A39Y-01	TMEM135	ENST00000526733.1	chr11	86749081:86749228:86778735:86778863:86782564:86782657,86749081:86749228:86778735:86778863:86802403:86802437,	86778736	86778863	86778857	86778857	Frame_Shift_Del	T	-	p.I88fs
LIHC	TCGA-DD-A39Y-01	TYR	ENST00000263321.5	chr11	88960990:88961138:89017940:89018122:89028310:89028476,	89017941	89018122	89018040	89018040	Frame_Shift_Del	T	-	p.P428fs
LIHC	TCGA-DD-A39Y-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000525278.1,ENST00000529343.1,ENST00000263317.4,ENST00000525196.1,ENST00000413594.2,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89182607:89182692:89184952:89185063:89223625:89223721,	89184953	89185063	89184999	89184999	Frame_Shift_Del	A	-	p.L49fs
LIHC	TCGA-DD-A39Y-01	NAALAD2	ENST00000534061.1	chr11	89891312:89891406:89892406:89892505:89896116:89896202,	89892407	89892505	89892446	89892446	Frame_Shift_Del	G	-	p.K310fs
LIHC	TCGA-DD-A39Y-01	NAALAD2	ENST00000534061.1,ENST00000321955.4	chr11	89902096:89902160:89903236:89903304:89906991:89907083,	89903237	89903304	89903290	89903290	Frame_Shift_Del	A	-	p.K466fs
LIHC	TCGA-DD-A39Y-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471604	93471604	Frame_Shift_Del	C	-	p.E44fs
LIHC	TCGA-DD-A39Y-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471604	93471604	Frame_Shift_Del	C	-	p.E44fs
LIHC	TCGA-DD-A39Y-01	C11orf54	ENST00000530620.1,ENST00000354421.3,ENST00000528099.1,ENST00000540113.1,ENST00000331239.4	chr11	93487101:93487203:93488375:93488552:93490481:93490587,	93488376	93488552	93488524	93488524	Frame_Shift_Del	T	-	p.L160fs
LIHC	TCGA-DD-A39Y-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533094	94533094	Frame_Shift_Del	G	-	p.K246fs
LIHC	TCGA-DD-A39Y-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533194	94533194	Frame_Shift_Del	C	-	p.P280fs
LIHC	TCGA-DD-A39Y-01	SESN3	ENST00000393234.1,ENST00000536441.1,ENST00000416495.2	chr11	94918419:94918656:94922942:94923125:94924567:94924765,	94922943	94923125	94922955	94922955	Frame_Shift_Del	T	-	p.K171fs
LIHC	TCGA-DD-A39Y-01	FAM76B	ENST00000358780.5	chr11	95511985:95512121:95512770:95512851:95513042:95513090,	95512771	95512851	95512807	95512807	Frame_Shift_Del	T	-	p.K219fs
LIHC	TCGA-DD-A39Y-01	CEP57	ENST00000325542.5,ENST00000539855.1,ENST00000541150.1,ENST00000540830.1,ENST00000537677.1	chr11	95555040:95555142:95555662:95555740:95560949:95561065,	95555663	95555740	95555680	95555680	Frame_Shift_Del	T	-	p.Y275fs
LIHC	TCGA-DD-A39Y-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117368	96117368	Frame_Shift_Del	T	-	p.R182fs
LIHC	TCGA-DD-A39Y-01	CNTN5	ENST00000528682.1,ENST00000524871.1,ENST00000528727.1,ENST00000527185.1,ENST00000279463.3	chr11	99426945:99427000:99690274:99690496:99715583:99715707,	99690275	99690496	99690282	99690282	Frame_Shift_Del	A	-	p.S21fs
LIHC	TCGA-DD-A39Y-01	ARHGAP42	ENST00000524892.2,ENST00000531183.1,ENST00000298815.8	chr11	100792224:100792335:100803886:100803991:100806933:100807063,	100803887	100803991	100803916	100803916	Frame_Shift_Del	T	-	p.T175fs
LIHC	TCGA-DD-A39Y-01	PGR	ENST00000325455.5,ENST00000534780.1,ENST00000534013.1	chr11	100922154:100922299:100933177:100933483:100962490:100962607,	100933178	100933483	100933404	100933404	Frame_Shift_Del	A	-	p.V662fs
LIHC	TCGA-DD-A39Y-01	TRPC6	ENST00000348423.4,ENST00000344327.3,ENST00000360497.4	chr11	101344239:101344504:101347031:101347265:101353679:101353896,	101347032	101347265	101347222	101347222	Frame_Shift_Del	G	-	p.P518fs
LIHC	TCGA-DD-A39Y-01	TRPC6	ENST00000360497.4	chr11	101353679:101353896:101362286:101362469:101374754:101374821,	101362287	101362469	101362370	101362370	Frame_Shift_Del	C	-	p.D349fs
LIHC	TCGA-DD-A39Y-01	ANGPTL5	ENST00000534527.1	chr11	101771160:101771281:101776474:101776578:101777833:101777978,	101776475	101776578	101776532	101776532	Frame_Shift_Del	T	-	p.K96fs
LIHC	TCGA-DD-A39Y-01	BIRC2	ENST00000527910.1,ENST00000530675.1,ENST00000532672.1,ENST00000227758.2	chr11	102220731:102221480:102221574:102221674:102233626:102233705,	102221575	102221674	102221647	102221647	Frame_Shift_Del	G	-	p.W323fs
LIHC	TCGA-DD-A39Y-01	MMP7	ENST00000533366.1,ENST00000531200.1	chr11	102398254:102398403:102398487:102398714:102401323:102401478,	102398488	102398714	102398514	102398514	Frame_Shift_Del	T	-	p.K103fs
LIHC	TCGA-DD-A39Y-01	MMP10	ENST00000539681.1	chr11	102649943:102650092:102650234:102650476:102651217:102651359,	102650235	102650476	102650395	102650395	Frame_Shift_Del	T	-	p.I63fs
LIHC	TCGA-DD-A39Y-01	DCUN1D5	ENST00000529281.1,ENST00000260247.5,ENST00000531571.1,ENST00000527260.1,ENST00000525420.1	chr11	102937216:102937296:102953476:102953568:102953984:102954055,	102953477	102953568	102953515	102953515	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A39Y-01	DYNC2H1	ENST00000334267.7,ENST00000398093.3,ENST00000375735.2	chr11	102984831:102984967:102985905:102986024:102987298:102987443,	102985906	102986024	102985935	102985935	Frame_Shift_Del	T	-	p.F178fs
LIHC	TCGA-DD-A39Y-01	DYNC2H1	ENST00000334267.7,ENST00000398093.3,ENST00000375735.2	chr11	102984831:102984967:102985905:102986024:102987298:102987443,	102985906	102986024	102985994	102985994	Frame_Shift_Del	T	-	p.Y197fs
LIHC	TCGA-DD-A39Y-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103182606:103182762:103187273:103187349:103191757:103191966,	103187274	103187349	103187295	103187295	Frame_Shift_Del	T	-	p.F3891fs
LIHC	TCGA-DD-A39Y-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874011	104874011	Frame_Shift_Del	T	-	p.N191fs
LIHC	TCGA-DD-A39Y-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104877827	104877827	Frame_Shift_Del	T	-	p.K152fs
LIHC	TCGA-DD-A39Y-01	CWF19L2	ENST00000532251.1,ENST00000282251.5	chr11	107205606:107205687:107207283:107207439:107219662:107219779,	107207284	107207439	107207381	107207381	Frame_Shift_Del	A	-	p.L754fs
LIHC	TCGA-DD-A39Y-01	CWF19L2	ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107224249:107224462:107260799:107260937:107263504:107263621,	107260800	107260937	107260852	107260852	Frame_Shift_Del	T	-	p.K607fs
LIHC	TCGA-DD-A39Y-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107263504:107263621:107286934:107287024:107288919:107289010,	107286935	107287024	107286947	107286947	Frame_Shift_Del	T	-	p.K535fs
LIHC	TCGA-DD-A39Y-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299599	107299599	Frame_Shift_Del	T	-	p.K453fs
LIHC	TCGA-DD-A39Y-01	ALKBH8	ENST00000428149.2,ENST00000417449.2,ENST00000389568.3	chr11	107381612:107381762:107393024:107393281:107396166:107396318,	107393025	107393281	107393238	107393238	Frame_Shift_Del	G	-	p.P358fs
LIHC	TCGA-DD-A39Y-01	SLC35F2	ENST00000532513.2	chr11	107675443:107675496:107676084:107676241:107677442:107677602,107673726:107673881:107676084:107676241:107677442:107677602,	107676085	107676241	107676130	107676130	Frame_Shift_Del	A	-	p.L229fs
LIHC	TCGA-DD-A39Y-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107904527:107904637:107916996:107917096:107920616:107920793,	107916997	107917096	107917039	107917039	Frame_Shift_Del	A	-	p.A59fs
LIHC	TCGA-DD-A39Y-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920758	107920758	Frame_Shift_Del	A	-	p.K127fs
LIHC	TCGA-DD-A39Y-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107925601:107925682:107940822:107940916:107943058:107943189,	107940823	107940916	107940885	107940885	Frame_Shift_Del	C	-	p.C281fs
LIHC	TCGA-DD-A39Y-01	CUL5	ENST00000531427.1	chr11	107969187:107969256:107974916:107975629:107976933:107977579,	107974917	107975629	107974995	107974995	Frame_Shift_Del	A	-	p.K743fs
LIHC	TCGA-DD-A39Y-01	ACAT1	ENST00000299355.6,ENST00000524833.1,ENST00000531813.1	chr11	107992310:107992405:108002633:108002681:108004546:108004664,	108002634	108002681	108002675	108002675	Frame_Shift_Del	T	-	p.T38fs
LIHC	TCGA-DD-A39Y-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108043411	108043411	Frame_Shift_Del	T	-	p.N767fs
LIHC	TCGA-DD-A39Y-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044552	108044552	Frame_Shift_Del	A	-	p.C387fs
LIHC	TCGA-DD-A39Y-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108099904:108100050:108106396:108106561:108114679:108114811,	108106397	108106561	108106514	108106514	Frame_Shift_Del	T	-	p.L150fs
LIHC	TCGA-DD-A39Y-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108128207:108128333:108129712:108129802:108137897:108138069,	108129713	108129802	108129794	108129794	Frame_Shift_Del	A	-	p.K820fs
LIHC	TCGA-DD-A39Y-01	C11orf65	ENST00000533583.1,ENST00000393084.1,ENST00000525729.1,ENST00000529391.1,ENST00000527531.1	chr11	108264039:108264105:108276155:108276286:108277489:108277690,	108276156	108276286	108276175	108276175	Frame_Shift_Del	T	-	p.I132fs
LIHC	TCGA-DD-A39Y-01	EXPH5	ENST00000525344.1	chr11	108409750:108409913:108412378:108412539:108464144:108464231,	108412379	108412539	108412454	108412454	Frame_Shift_Del	A	-	p.C69fs
LIHC	TCGA-DD-A39Y-01	RDX	ENST00000528498.1,ENST00000544551.1,ENST00000530131.1,ENST00000530749.1,ENST00000528900.1,ENST00000343115.4,ENST00000405097.1	chr11	110106823:110106916:110108216:110108377:110118427:110118558,	110108217	110108377	110108253	110108253	Frame_Shift_Del	T	-	p.K405fs
LIHC	TCGA-DD-A39Y-01	RDX	ENST00000528498.1,ENST00000544551.1,ENST00000530131.1,ENST00000530749.1,ENST00000343115.4,ENST00000405097.1	chr11	110108216:110108377:110118427:110118558:110124670:110124834,	110118428	110118558	110118487	110118487	Frame_Shift_Del	T	-	p.K344fs
LIHC	TCGA-DD-A39Y-01	RDX	ENST00000530301.1	chr11	110128903:110128914:110134684:110134959:110143260:110143344,	110134685	110134959	110134936	110134936	Frame_Shift_Del	T	-	p.K72fs
LIHC	TCGA-DD-A39Y-01	LAYN	ENST00000530962.1,ENST00000375615.3,ENST00000375614.2,ENST00000533265.1,ENST00000525126.1,ENST00000533999.1	chr11	111414647:111414945:111420342:111420500:111425285:111425318,	111420343	111420500	111420413	111420413	Frame_Shift_Del	C	-	p.P152fs
LIHC	TCGA-DD-A39Y-01	SIK2	ENST00000304987.3	chr11	111486966:111487083:111491062:111491126:111558724:111558886,	111491063	111491126	111491089	111491089	Frame_Shift_Del	C	-	p.Y93fs
LIHC	TCGA-DD-A39Y-01	SIK2	ENST00000304987.3	chr11	111558724:111558886:111571609:111571734:111572175:111572299,	111571610	111571734	111571682	111571682	Frame_Shift_Del	C	-	p.A184fs
LIHC	TCGA-DD-A39Y-01	PIH1D2	ENST00000431456.1,ENST00000532211.1,ENST00000530641.1,ENST00000528775.1,ENST00000280350.4	chr11	111941159:111941425:111941761:111942007:111942358:111942482,	111941762	111942007	111941932	111941932	Frame_Shift_Del	T	-	p.N126fs
LIHC	TCGA-DD-A39Y-01	PIH1D2	ENST00000525072.1	chr11	111941159:111941425:111941761:111941956:111942358:111942482,	111941762	111941956	111941932	111941932	Frame_Shift_Del	T	-	p.N126fs
LIHC	TCGA-DD-A39Y-01	PTS	ENST00000528679.1,ENST00000531673.1	chr11	112100930:112100953:112101348:112101405:112103885:112103956,112099316:112099396:112101348:112101405:112103885:112103951,	112101349	112101405	112101391	112101391	Frame_Shift_Del	A	-	p.K78fs
LIHC	TCGA-DD-A39Y-01	HTR3B	ENST00000537778.1,ENST00000260191.2	chr11	113803657:113803815:113813703:113813914:113815294:113815424,	113813704	113813914	113813721	113813721	Frame_Shift_Del	C	-	p.H238fs
LIHC	TCGA-DD-A39Y-01	NNMT	ENST00000535401.1	chr11	114133609:114133656:114167149:114167432:114168672:114168880,	114167150	114167432	114167405	114167405	Frame_Shift_Del	A	-	p.K43fs
LIHC	TCGA-DD-A39Y-01	NNMT	ENST00000535401.1,ENST00000299964.3	chr11	114167149:114167432:114168672:114168880:114182766:114182930,	114168673	114168880	114168750	114168750	Frame_Shift_Del	T	-	p.F78fs
LIHC	TCGA-DD-A39Y-01	NXPE1	ENST00000251921.2,ENST00000424269.1,ENST00000536271.1	chr11	114392437:114393225:114393600:114393813:114398561:114398623,	114393601	114393813	114393668	114393668	Frame_Shift_Del	T	-	p.K63fs
LIHC	TCGA-DD-A39Y-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116627861:116627943:116628481:116628666:116628984:116629123,	116628482	116628666	116628539	116628539	Frame_Shift_Del	C	-	p.D543fs
LIHC	TCGA-DD-A39Y-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116627861:116627943:116628481:116628666:116628984:116629123,	116628482	116628666	116628607	116628607	Frame_Shift_Del	T	-	p.K520fs
LIHC	TCGA-DD-A39Y-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116628481:116628666:116628984:116629123:116629789:116629895,	116628985	116629123	116629103	116629103	Frame_Shift_Del	T	-	p.T461fs
LIHC	TCGA-DD-A39Y-01	APOA1	ENST00000375323.1,ENST00000236850.4,ENST00000375320.1,ENST00000359492.2	chr11	116706979:116707127:116707716:116707873:116708060:116708123,	116707717	116707873	116707820	116707820	Frame_Shift_Del	C	-	p.D33fs
LIHC	TCGA-DD-A39Y-01	SIK3	ENST00000375300.1,ENST00000375288.1,ENST00000542607.1,ENST00000497049.1,ENST00000413553.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116767908:116768033:116797934:116798096:116824759:116824823,	116797935	116798096	116797973	116797973	Frame_Shift_Del	T	-	p.N193fs
LIHC	TCGA-DD-A39Y-01	PAFAH1B2	ENST00000419197.2,ENST00000533206.1,ENST00000530272.1,ENST00000529887.2	chr11	117015097:117015134:117023156:117023244:117030649:117030739,	117023157	117023244	117023240	117023240	Frame_Shift_Del	C	-	p.S26fs
LIHC	TCGA-DD-A39Y-01	SIDT2	ENST00000324225.4,ENST00000532062.1,ENST00000278951.7,ENST00000431081.2	chr11	117063868:117063974:117064568:117064679:117066517:117066631,	117064569	117064679	117064598	117064598	Frame_Shift_Del	C	-	p.I747fs
LIHC	TCGA-DD-A39Y-01	CEP164	ENST00000533223.1,ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117265838:117265907:117266262:117266438:117266769:117266896,	117266263	117266438	117266387	117266387	Frame_Shift_Del	C	-	p.S1013fs
LIHC	TCGA-DD-A39Y-01	TMPRSS4	ENST00000522151.1	chr11	117965536:117965570:117969699:117969813:117973815:117973968,117965536:117965570:117969699:117969813:117975405:117975535,	117969700	117969813	117969752	117969752	Frame_Shift_Del	G	-	p.V30fs
LIHC	TCGA-DD-A39Y-01	MPZL3	ENST00000278949.4,ENST00000527472.1	chr11	118106177:118106304:118107764:118107975:118110925:118111092,	118107765	118107975	118107815	118107815	Frame_Shift_Del	G	-	p.P134fs
LIHC	TCGA-DD-A39Y-01	CD3E	ENST00000361763.4	chr11	118182867:118182885:118183332:118183581:118184421:118184459,	118183333	118183581	118183466	118183466	Frame_Shift_Del	G	-	p.E79fs
LIHC	TCGA-DD-A39Y-01	CD3G	ENST00000532917.1,ENST00000532903.1,ENST00000292144.4	chr11	118220457:118220685:118221266:118221398:118222342:118222386,	118221267	118221398	118221349	118221349	Frame_Shift_Del	T	-	p.A130fs
LIHC	TCGA-DD-A39Y-01	KMT2A	ENST00000389506.5,ENST00000354520.4,ENST00000534358.1	chr11	118362458:118362643:118363771:118363945:118365002:118365113,	118363772	118363945	118363830	118363830	Frame_Shift_Del	C	-	p.S1688fs
LIHC	TCGA-DD-A39Y-01	KMT2A	ENST00000389506.5,ENST00000354520.4,ENST00000534358.1,ENST00000525408.1	chr11	118390671:118390779:118391516:118391600:118392002:118392132,	118391517	118391600	118391565	118391565	Frame_Shift_Del	A	-	p.L3826fs
LIHC	TCGA-DD-A39Y-01	ARCN1	ENST00000264028.4	chr11	118443167:118443265:118451960:118452224:118453893:118454073,	118451961	118452224	118451987	118451987	Frame_Shift_Del	A	-	p.T51fs
LIHC	TCGA-DD-A39Y-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118495649:118495775:118498020:118499366:118501923:118502196,	118498021	118499366	118498072	118498072	Frame_Shift_Del	G	-	p.R178fs
LIHC	TCGA-DD-A39Y-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000534140.1,ENST00000527898.1,ENST00000534672.1,ENST00000528594.1,ENST00000525698.1	chr11	118509879:118509969:118514517:118514658:118514789:118514892,	118514518	118514658	118514560	118514560	Frame_Shift_Del	C	-	p.P974fs
LIHC	TCGA-DD-A39Y-01	TREH	ENST00000264029.4,ENST00000531295.1,ENST00000529101.1	chr11	118532101:118532218:118532598:118532699:118533589:118533677,118532345:118532438:118532598:118532699:118533589:118533677,	118532599	118532699	118532674	118532674	Frame_Shift_Del	G	-	p.P150fs
LIHC	TCGA-DD-A39Y-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118635916:118636063:118638930:118639060:118650340:118650445,	118638931	118639060	118639005	118639005	Frame_Shift_Del	T	-	p.N142fs
LIHC	TCGA-DD-A39Y-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850268	118850268	Frame_Shift_Del	G	-	p.A167fs
LIHC	TCGA-DD-A39Y-01	HYOU1	ENST00000532519.2,ENST00000543287.1	chr11	118919425:118919598:118919729:118920082:118920267:118920347,	118919730	118920082	118919757	118919757	Frame_Shift_Del	T	-	p.K655fs
LIHC	TCGA-DD-A39Y-01	HYOU1	ENST00000404233.3	chr11	118919425:118919598:118919729:118919915:118920267:118920347,	118919730	118919915	118919757	118919757	Frame_Shift_Del	T	-	p.K655fs
LIHC	TCGA-DD-A39Y-01	HYOU1	ENST00000404233.3,ENST00000532519.2,ENST00000530473.1,ENST00000543287.1,ENST00000525859.1,ENST00000529972.1	chr11	118922149:118922337:118922530:118922663:118922801:118922884,	118922531	118922663	118922614	118922614	Frame_Shift_Del	C	-	p.A419fs
LIHC	TCGA-DD-A39Y-01	HINFP	ENST00000529354.1,ENST00000527410.1	chr11	118992325:118992349:118997644:118997835:119001434:119001553,	118997645	118997835	118997710	118997710	Frame_Shift_Del	G	-	p.W19fs
LIHC	TCGA-DD-A39Y-01	HINFP	ENST00000527354.1	chr11	118997644:118997835:119001434:119001664:119002244:119002356,118992325:118992349:119001434:119001664:119002244:119002356,	119001435	119001664	119001583	119001583	Frame_Shift_Del	C	-	p.G110fs
LIHC	TCGA-DD-A39Y-01	ABCG4	ENST00000307417.3,ENST00000531739.1,ENST00000449422.2	chr11	119029538:119029639:119030936:119031095:119031247:119031366,	119030937	119031095	119031052	119031052	Frame_Shift_Del	A	-	p.Q518fs
LIHC	TCGA-DD-A39Y-01	TMEM136	ENST00000529187.1,ENST00000314475.2	chr11	120196015:120196077:120197830:120198349:120200685:120200758,	120197831	120198349	120198275	120198275	Frame_Shift_Del	C	-	p.T42fs
LIHC	TCGA-DD-A39Y-01	GRIK4	ENST00000438375.2,ENST00000527524.2	chr11	120837903:120838032:120852814:120852933:120856612:120857970,	120852815	120852933	120852898	120852898	Frame_Shift_Del	T	-	p.F827fs
LIHC	TCGA-DD-A39Y-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	121058540:121058703:121059788:121059876:121060472:121060589,	121059789	121059876	121059827	121059827	Frame_Shift_Del	A	-	p.T2067fs
LIHC	TCGA-DD-A39Y-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	121059788:121059876:121060472:121060589:121061414:121061515,	121060473	121060589	121060512	121060512	Frame_Shift_Del	T	-	p.I2097fs
LIHC	TCGA-DD-A39Y-01	SORL1	ENST00000532451.1,ENST00000260197.7	chr11	121367577:121367758:121383711:121383813:121384860:121385030,	121383712	121383813	121383790	121383790	Frame_Shift_Del	T	-	p.F340fs
LIHC	TCGA-DD-A39Y-01	CLMP	ENST00000527977.1	chr11	122944413:122944482:122945409:122945558:122953792:122953915,	122945410	122945558	122945485	122945485	Frame_Shift_Del	A	-	p.F249fs
LIHC	TCGA-DD-A39Y-01	CLMP	ENST00000530371.1	chr11	122944413:122944482:122945409:122945524:122953792:122953915,	122945410	122945524	122945485	122945485	Frame_Shift_Del	A	-	p.F249fs
LIHC	TCGA-DD-A39Y-01	CLMP	ENST00000448775.2	chr11	122944413:122944482:122945409:122945551:122953792:122953915,	122945410	122945551	122945485	122945485	Frame_Shift_Del	A	-	p.F249fs
LIHC	TCGA-DD-A39Y-01	TBRG1	ENST00000530731.1,ENST00000473629.2,ENST00000441174.3,ENST00000375005.4,ENST00000284290.4,ENST00000529543.1,ENST00000438907.2	chr11	124496799:124496946:124500283:124500381:124500640:124500751,	124500284	124500381	124500307	124500307	Frame_Shift_Del	C	-	p.D254fs
LIHC	TCGA-DD-A39Y-01	VSIG2	ENST00000326621.5	chr11	124617367:124617563:124618285:124618430:124618539:124618659,	124618286	124618430	124618298	124618298	Frame_Shift_Del	C	-	p.G280fs
LIHC	TCGA-DD-A39Y-01	ROBO3	ENST00000528144.1	chr11	124746770:124746828:124747414:124747554:124748479:124748609,	124747415	124747554	124747438	124747438	Frame_Shift_Del	C	-	p.A957fs
LIHC	TCGA-DD-A39Y-01	ROBO3	ENST00000529658.1	chr11	124746770:124746828:124747414:124748027:124748193:124748332,	124747415	124748027	124747438	124747438	Frame_Shift_Del	C	-	p.A957fs
LIHC	TCGA-DD-A39Y-01	ROBO4	ENST00000306534.3,ENST00000533054.1	chr11	124754936:124755143:124756359:124756718:124756872:124756995,	124756360	124756718	124756550	124756550	Frame_Shift_Del	G	-	p.P868fs
LIHC	TCGA-DD-A39Y-01	ROBO4	ENST00000306534.3,ENST00000533054.1	chr11	124754936:124755143:124756359:124756718:124756872:124756995,	124756360	124756718	124756604	124756604	Frame_Shift_Del	C	-	p.G850fs
LIHC	TCGA-DD-A39Y-01	TMEM218	ENST00000279968.4	chr11	124971096:124971152:124972027:124972247:124972629:124972705,124971151:124971199:124972027:124972247:124972532:124972705,	124972028	124972247	124972100	124972100	Frame_Shift_Del	A	-	p.F13fs
LIHC	TCGA-DD-A39Y-01	TMEM218	ENST00000527271.1,ENST00000526175.1,ENST00000529583.1	chr11	124971151:124971199:124972027:124972213:124972532:124972705,124971096:124971152:124972027:124972213:124972532:124972705,124971151:124971199:124972027:124972213:124972629:124972705,	124972028	124972213	124972100	124972100	Frame_Shift_Del	A	-	p.F13fs
LIHC	TCGA-DD-A39Y-01	TMEM218	ENST00000533273.1	chr11	124971151:124971199:124972027:124972705:124980539:124980642,124971151:124971199:124972027:124972705:124981434:124981475,	124972028	124972705	124972100	124972100	Frame_Shift_Del	A	-	p.F13fs
LIHC	TCGA-DD-A39Y-01	TMEM218	ENST00000527766.1	chr11	124971151:124971199:124972027:124972198:124972629:124972705,	124972028	124972198	124972100	124972100	Frame_Shift_Del	A	-	p.F13fs
LIHC	TCGA-DD-A39Y-01	TMEM218	ENST00000279968.4	chr11	124971096:124971152:124972027:124972247:124972629:124972705,124971151:124971199:124972027:124972247:124972532:124972705,	124972028	124972247	124972106	124972106	Frame_Shift_Del	C	-	p.G11fs
LIHC	TCGA-DD-A39Y-01	TMEM218	ENST00000527271.1,ENST00000526175.1,ENST00000529583.1	chr11	124971151:124971199:124972027:124972213:124972532:124972705,124971096:124971152:124972027:124972213:124972532:124972705,124971151:124971199:124972027:124972213:124972629:124972705,	124972028	124972213	124972106	124972106	Frame_Shift_Del	C	-	p.G11fs
LIHC	TCGA-DD-A39Y-01	TMEM218	ENST00000533273.1	chr11	124971151:124971199:124972027:124972705:124980539:124980642,124971151:124971199:124972027:124972705:124981434:124981475,	124972028	124972705	124972106	124972106	Frame_Shift_Del	C	-	p.G11fs
LIHC	TCGA-DD-A39Y-01	TMEM218	ENST00000527766.1	chr11	124971151:124971199:124972027:124972198:124972629:124972705,	124972028	124972198	124972106	124972106	Frame_Shift_Del	C	-	p.G11fs
LIHC	TCGA-DD-A39Y-01	PKNOX2	ENST00000526955.1	chr11	125267769:125267958:125279934:125281761:125298907:125298984,	125279935	125281761	125280739	125280739	Frame_Shift_Del	C	-	p.I261fs
LIHC	TCGA-DD-A39Y-01	PKNOX2	ENST00000298282.9,ENST00000530517.1,ENST00000532623.1,ENST00000542175.1,ENST00000531116.1	chr11	125280103:125280221:125280674:125280772:125281641:125281761,	125280675	125280772	125280739	125280739	Frame_Shift_Del	C	-	p.I261fs
LIHC	TCGA-DD-A39Y-01	PUS3	ENST00000534158.1	chr11	125765564:125765684:125765801:125766225:125773064:125773116,	125765802	125766225	125766131	125766131	Frame_Shift_Del	T	-	p.R17fs
LIHC	TCGA-DD-A39Y-01	CDON	ENST00000263577.7,ENST00000392693.3,ENST00000531738.1	chr11	125864765:125864947:125867101:125867305:125871613:125871745,	125867102	125867305	125867221	125867221	Frame_Shift_Del	C	-	p.G748fs
LIHC	TCGA-DD-A39Y-01	ST3GAL4	ENST00000534083.1,ENST00000444328.2,ENST00000227495.6,ENST00000532243.1,ENST00000526727.1,ENST00000392669.2,ENST00000449406.2,ENST00000530591.1,ENST00000531217.1,ENST00000356132.4,ENST00000534457.1,ENST00000524860.1	chr11	126278344:126278391:126279162:126279306:126283399:126283543,	126279163	126279306	126279200	126279200	Frame_Shift_Del	G	-	p.W222fs
LIHC	TCGA-DD-A39Y-01	FLI1	ENST00000534087.2,ENST00000344954.6,ENST00000281428.8,ENST00000429175.3,ENST00000525560.1,ENST00000608303.1,ENST00000527786.2	chr11	128651852:128651918:128675260:128675326:128677074:128677134,	128675261	128675326	128675294	128675294	Frame_Shift_Del	G	-	p.W197fs
LIHC	TCGA-DD-A39Y-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128843246	128843246	Frame_Shift_Del	T	-	p.N1038fs
LIHC	TCGA-DD-A39Y-01	TMEM45B	ENST00000527754.1,ENST00000524567.1,ENST00000281441.3	chr11	129722369:129722555:129724504:129724711:129725602:129725787,	129724505	129724711	129724612	129724612	Frame_Shift_Del	T	-	p.F96fs
LIHC	TCGA-DD-A39Y-01	NFRKB	ENST00000304521.5,ENST00000524746.1,ENST00000446488.3,ENST00000524794.1	chr11	129734598:129734745:129734860:129734996:129735771:129735878,	129734861	129734996	129734982	129734982	Frame_Shift_Del	C	-	p.G1218fs
LIHC	TCGA-DD-A39Y-01	ST14	ENST00000278742.5	chr11	130068841:130068964:130069845:130070032:130078304:130078579,	130069846	130070032	130069887	130069887	Frame_Shift_Del	G	-	p.G618fs
LIHC	TCGA-DD-A39Y-01	ZBTB44	ENST00000357899.4,ENST00000397753.1,ENST00000525842.1	chr11	130109706:130109791:130130750:130131824:130184269:130184486,	130130751	130131824	130131288	130131288	Frame_Shift_Del	A	-	p.S161fs
LIHC	TCGA-DD-A39Y-01	ZBTB44	ENST00000357899.4,ENST00000397753.1,ENST00000525842.1	chr11	130109706:130109791:130130750:130131824:130184269:130184486,	130130751	130131824	130131470	130131470	Frame_Shift_Del	T	-	p.N100fs
LIHC	TCGA-DD-A39Y-01	ADAMTS8	ENST00000257359.6,ENST00000531752.1	chr11	130274819:130276023:130278358:130278534:130278662:130278835,	130278359	130278534	130278417	130278417	Frame_Shift_Del	C	-	p.V681fs
LIHC	TCGA-DD-A39Y-01	NTM	ENST00000539799.1,ENST00000427481.2,ENST00000425719.2	chr11	132187548:132187584:132200046:132200079:132204939:132204945,132184445:132184597:132200046:132200079:132204939:132204945,	132200047	132200079	132200062	132200062	Frame_Shift_Del	C	-	p.A317fs
LIHC	TCGA-DD-A39Y-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018560	134018560	Frame_Shift_Del	G	-	p.Q277fs
LIHC	TCGA-DD-A39Y-01	VPS26B	ENST00000527586.1	chr11	134104855:134104947:134109884:134110049:134113012:134113090,134095192:134095239:134109884:134110049:134113012:134113090,	134109885	134110049	134109898	134109898	Frame_Shift_Del	G	-	p.A132fs
LIHC	TCGA-DD-A39Y-01	THYN1	ENST00000531135.1,ENST00000392595.2,ENST00000392594.3,ENST00000533975.1,ENST00000352327.5,ENST00000341541.3	chr11	134119060:134119156:134119721:134119814:134120168:134120232,	134119722	134119814	134119771	134119771	Frame_Shift_Del	A	-	p.F113fs
LIHC	TCGA-DD-A39Y-01	GLB1L2	ENST00000535456.2,ENST00000389881.3,ENST00000525089.2,ENST00000339772.7	chr11	134241645:134241724:134243614:134243702:134244038:134244150,	134243615	134243702	134243695	134243695	Frame_Shift_Del	T	-	p.F530fs
LIHC	TCGA-DD-A39Y-01	SLC6A13	ENST00000543722.1	chr12	333157:333295:333566:333679:335555:335650,333191:333282:333566:333679:335555:335680,	333567	333679	333604	333604	Frame_Shift_Del	A	-	p.F381fs
LIHC	TCGA-DD-A39Y-01	WNK1	ENST00000537687.1	chr12	971400:971436:977031:978270:980430:980514,	977032	978270	977604	977604	Frame_Shift_Del	G	-	p.Q904fs
LIHC	TCGA-DD-A39Y-01	WNK1	ENST00000537687.1	chr12	988738:989197:989886:990165:990857:990955,987437:987527:989886:990165:990857:990955,	989887	990165	990120	990120	Frame_Shift_Del	T	-	p.S1282fs
LIHC	TCGA-DD-A39Y-01	ADIPOR2	ENST00000357103.4	chr12	1889616:1889803:1890054:1890242:1893045:1893239,	1890055	1890242	1890201	1890201	Frame_Shift_Del	G	-	p.W266fs
LIHC	TCGA-DD-A39Y-01	CACNA2D4	ENST00000585708.1,ENST00000586184.1,ENST00000444595.2,ENST00000587995.1,ENST00000588077.1,ENST00000280663.8,ENST00000382722.5	chr12	1969310:1969372:1983769:1983841:1984416:1984503,	1983770	1983841	1983814	1983814	Frame_Shift_Del	T	-	p.T612fs
LIHC	TCGA-DD-A39Y-01	CACNA1C	ENST00000399638.1,ENST00000480911.1,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2602367:2602552:2614007:2614111:2621977:2622150,	2614008	2614111	2614074	2614074	Frame_Shift_Del	T	-	p.F395fs
LIHC	TCGA-DD-A39Y-01	CACNA1C	ENST00000347598.4,ENST00000399606.1	chr12	2705039:2705169:2706395:2706455:2711019:2711126,2705039:2705169:2706395:2706455:2706602:2706662,	2706396	2706455	2706402	2706402	Frame_Shift_Del	T	-	p.F934fs
LIHC	TCGA-DD-A39Y-01	CACNA1C	ENST00000347598.4,ENST00000399606.1	chr12	2705039:2705169:2706395:2706455:2711019:2711126,2705039:2705169:2706395:2706455:2706602:2706662,	2706396	2706455	2706407	2706407	Frame_Shift_Del	T	-	p.Y935fs
LIHC	TCGA-DD-A39Y-01	FOXM1	ENST00000361953.3,ENST00000342628.2,ENST00000359843.3	chr12	2981261:2981413:2983142:2983691:2986085:2986107,	2983143	2983691	2983307	2983307	Frame_Shift_Del	C	-	p.G113fs
LIHC	TCGA-DD-A39Y-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736689	4736689	Frame_Shift_Del	A	-	p.L460fs
LIHC	TCGA-DD-A39Y-01	VWF	ENST00000261405.5	chr12	6134745:6134859:6135071:6135212:6138507:6138654,	6135072	6135212	6135122	6135122	Frame_Shift_Del	C	-	p.D1020fs
LIHC	TCGA-DD-A39Y-01	VWF	ENST00000261405.5	chr12	6134745:6134859:6135071:6135212:6138507:6138654,	6135072	6135212	6135183	6135183	Frame_Shift_Del	A	-	p.F999fs
LIHC	TCGA-DD-A39Y-01	LTBR	ENST00000543190.1	chr12	6495231:6495328:6495512:6495610:6497563:6497671,6495231:6495328:6495512:6495610:6496963:6497076,6494392:6494545:6495512:6495610:6497563:6497671,	6495513	6495610	6495574	6495574	Frame_Shift_Del	A	-	p.K211fs
LIHC	TCGA-DD-A39Y-01	ZNF384	ENST00000361959.3,ENST00000396801.3	chr12	6779925:6780004:6781515:6781698:6782381:6782561,	6781516	6781698	6781651	6781651	Frame_Shift_Del	G	-	p.P320fs
LIHC	TCGA-DD-A39Y-01	TPI1	ENST00000396705.5	chr12	6976694:6976845:6978027:6978151:6978262:6978347,	6978028	6978151	6978129	6978129	Frame_Shift_Del	G	-	p.G110fs
LIHC	TCGA-DD-A39Y-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000402681.3	chr12	7173120:7173274:7173821:7173937:7174342:7174421,	7173822	7173937	7173848	7173848	Frame_Shift_Del	C	-	p.P300fs
LIHC	TCGA-DD-A39Y-01	CLSTN3	ENST00000535313.1	chr12	7303523:7303659:7310084:7310287:7310536:7310901,7309306:7309525:7310084:7310287:7310536:7310901,	7310085	7310287	7310134	7310134	Frame_Shift_Del	G	-	p.L871fs
LIHC	TCGA-DD-A39Y-01	CLSTN3	ENST00000331148.5	chr12	7309306:7309525:7310084:7310342:7310536:7310901,	7310085	7310342	7310134	7310134	Frame_Shift_Del	G	-	p.L871fs
LIHC	TCGA-DD-A39Y-01	CLEC4A	ENST00000360500.3	chr12	8278156:8278273:8281859:8281958:8288180:8288332,8276507:8276556:8281859:8281958:8288180:8288332,	8281860	8281958	8281937	8281937	Frame_Shift_Del	A	-	p.K94fs
LIHC	TCGA-DD-A39Y-01	AICDA	ENST00000537228.1	chr12	8756880:8756933:8757402:8757488:8757810:8758081,	8757403	8757488	8757470	8757470	Frame_Shift_Del	A	-	p.F159fs
LIHC	TCGA-DD-A39Y-01	AICDA	ENST00000229335.6,ENST00000545512.1	chr12	8756880:8756933:8757402:8757518:8757810:8758081,	8757403	8757518	8757470	8757470	Frame_Shift_Del	A	-	p.F159fs
LIHC	TCGA-DD-A39Y-01	PHC1	ENST00000433083.2	chr12	9073580:9073661:9075252:9075384:9083030:9083140,9074196:9074346:9075252:9075384:9083030:9083140,	9075253	9075384	9075313	9075313	Frame_Shift_Del	G	-	p.G136fs
LIHC	TCGA-DD-A39Y-01	PHC1	ENST00000433847.2,ENST00000543824.1,ENST00000544916.1	chr12	9074196:9074346:9075228:9075384:9083030:9083140,	9075229	9075384	9075313	9075313	Frame_Shift_Del	G	-	p.G136fs
LIHC	TCGA-DD-A39Y-01	PHC1	ENST00000433847.2,ENST00000536844.1,ENST00000540574.1,ENST00000543824.1,ENST00000433083.2,ENST00000544916.1	chr12	9075339:9075384:9083030:9083523:9085158:9085409,	9083031	9083523	9083346	9083346	Frame_Shift_Del	G	-	p.G265fs
LIHC	TCGA-DD-A39Y-01	A2M	ENST00000318602.7,ENST00000404455.2	chr12	9264754:9264807:9264972:9265132:9265955:9266135,	9264973	9265132	9264980	9264980	Frame_Shift_Del	C	-	p.G141fs
LIHC	TCGA-DD-A39Y-01	CLEC7A	ENST00000534609.1	chr12	10277895:10278047:10279169:10280444:10282578:10282681,	10279170	10280444	10279176	10279176	Frame_Shift_Del	T	-	p.T113fs
LIHC	TCGA-DD-A39Y-01	CLEC7A	ENST00000529761.1,ENST00000304084.8,ENST00000531192.1,ENST00000533022.1	chr12	10277895:10278047:10279169:10279307:10280345:10280444,	10279170	10279307	10279176	10279176	Frame_Shift_Del	T	-	p.T113fs
LIHC	TCGA-DD-A39Y-01	CLEC7A	ENST00000534609.1	chr12	10277895:10278047:10279169:10280444:10282578:10282681,	10279170	10280444	10280396	10280396	Frame_Shift_Del	C	-	p.G51fs
LIHC	TCGA-DD-A39Y-01	CLEC7A	ENST00000528799.1,ENST00000298523.5	chr12	10277895:10278047:10280345:10280444:10282578:10282681,	10280346	10280444	10280396	10280396	Frame_Shift_Del	C	-	p.G51fs
LIHC	TCGA-DD-A39Y-01	EMP1	ENST00000544053.1	chr12	13349719:13349806:13366412:13366509:13366614:13366755,	13366413	13366509	13366453	13366453	Frame_Shift_Del	T	-	p.L40fs
LIHC	TCGA-DD-A39Y-01	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000541695.1,ENST00000542762.1,ENST00000540270.1,ENST00000318197.6	chr12	18854625:18854710:18858099:18858249:18865775:18865844,	18858100	18858249	18858124	18858124	Frame_Shift_Del	A	-	p.F280fs
LIHC	TCGA-DD-A39Y-01	AEBP2	ENST00000541908.1,ENST00000512223.2,ENST00000266508.9,ENST00000360995.4,ENST00000398864.3,ENST00000398731.2	chr12	19665331:19665399:19667604:19667718:19671020:19671047,	19667605	19667718	19667647	19667647	Frame_Shift_Del	A	-	p.L470fs
LIHC	TCGA-DD-A39Y-01	PYROXD1	ENST00000375266.4,ENST00000538582.1,ENST00000240651.9	chr12	21602496:21602625:21605014:21605088:21608065:21608226,	21605015	21605088	21605042	21605042	Frame_Shift_Del	A	-	p.K77fs
LIHC	TCGA-DD-A39Y-01	BCAT1	ENST00000261192.7,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24982756:24982831:24985656:24985797:24989444:24989530,	24985657	24985797	24985714	24985714	Frame_Shift_Del	A	-	p.F329fs
LIHC	TCGA-DD-A39Y-01	BCAT1	ENST00000261192.7,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24982756:24982831:24985656:24985797:24989444:24989530,	24985657	24985797	24985735	24985735	Frame_Shift_Del	C	-	p.G322fs
LIHC	TCGA-DD-A39Y-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26218295	26218295	Frame_Shift_Del	T	-	p.L323fs
LIHC	TCGA-DD-A39Y-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000539545.1,ENST00000405154.2,ENST00000282884.9	chr12	26217960:26218320:26220501:26220646:26221629:26221856,	26220502	26220646	26220542	26220542	Frame_Shift_Del	G	-	p.R345fs
LIHC	TCGA-DD-A39Y-01	FGFR1OP2	ENST00000327214.5,ENST00000395941.4,ENST00000546072.1	chr12	27091432:27091643:27107077:27107226:27109475:27109520,	27107078	27107226	27107141	27107141	Frame_Shift_Del	A	-	p.E17fs
LIHC	TCGA-DD-A39Y-01	CAPRIN2	ENST00000537553.1	chr12	30869556:30869610:30872012:30873849:30876192:30876248,	30872013	30873849	30872146	30872146	Frame_Shift_Del	G	-	p.P721fs
LIHC	TCGA-DD-A39Y-01	CAPRIN2	ENST00000395805.2	chr12	30869556:30869610:30872012:30872159:30873744:30873849,30869556:30869610:30872012:30872159:30876192:30876248,	30872013	30872159	30872146	30872146	Frame_Shift_Del	G	-	p.P721fs
LIHC	TCGA-DD-A39Y-01	CAPRIN2	ENST00000308433.5,ENST00000454014.2,ENST00000548676.1,ENST00000537553.1	chr12	30883172:30883216:30884276:30884444:30887901:30887948,	30884277	30884444	30884313	30884313	Frame_Shift_Del	T	-	p.T342fs
LIHC	TCGA-DD-A39Y-01	TSPAN11	ENST00000546076.1,ENST00000261177.9,ENST00000544427.1,ENST00000535215.1	chr12	31132500:31132605:31135466:31135625:31135998:31136085,	31135467	31135625	31135528	31135528	Frame_Shift_Del	G	-	p.R173fs
LIHC	TCGA-DD-A39Y-01	DDX11	ENST00000536265.1,ENST00000407793.2,ENST00000251758.5,ENST00000350437.4,ENST00000542838.1,ENST00000536580.1,ENST00000435753.2,ENST00000542129.1,ENST00000228264.6,ENST00000539049.1,ENST00000539673.1,ENST00000545668.1	chr12	31245795:31245826:31246178:31246258:31247523:31247567,	31246179	31246258	31246237	31246237	Frame_Shift_Del	A	-	p.K450fs
LIHC	TCGA-DD-A39Y-01	DDX11	ENST00000536265.1,ENST00000407793.2,ENST00000251758.5,ENST00000350437.4,ENST00000542838.1,ENST00000435753.2,ENST00000228264.6,ENST00000539699.1,ENST00000545668.1	chr12	31249847:31249924:31250818:31250931:31253568:31253641,	31250819	31250931	31250913	31250913	Frame_Shift_Del	G	-	p.A619fs
LIHC	TCGA-DD-A39Y-01	DENND5B	ENST00000389082.5,ENST00000306833.6,ENST00000536562.1	chr12	31551108:31551296:31552587:31552706:31555431:31555577,	31552588	31552706	31552696	31552696	Frame_Shift_Del	A	-	p.L987fs
LIHC	TCGA-DD-A39Y-01	DENND5B	ENST00000389082.5,ENST00000306833.6,ENST00000536562.1	chr12	31562196:31562318:31566369:31566498:31568300:31568382,	31566370	31566498	31566487	31566487	Frame_Shift_Del	T	-	p.N855fs
LIHC	TCGA-DD-A39Y-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31613172:31613315:31632522:31633189:31648743:31648836,	31632523	31633189	31632715	31632715	Frame_Shift_Del	G	-	p.L238fs
LIHC	TCGA-DD-A39Y-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32458630:32459056:32480394:32481489:32487449:32487601,	32480395	32481489	32480942	32480942	Frame_Shift_Del	T	-	p.L518fs
LIHC	TCGA-DD-A39Y-01	DNM1L	ENST00000547932.1	chr12	32854348:32854496:32860300:32860347:32861086:32861140,32854348:32854496:32860300:32860347:32863862:32863937,32854348:32854496:32860300:32860347:32871576:32871652,	32860301	32860347	32860319	32860319	Frame_Shift_Del	G	-	p.W90fs
LIHC	TCGA-DD-A39Y-01	DNM1L	ENST00000434676.2	chr12	32866142:32866305:32871576:32871697:32873597:32873729,32863862:32863949:32871576:32871697:32873597:32873729,	32871577	32871697	32871623	32871623	Frame_Shift_Del	G	-	p.A222fs
LIHC	TCGA-DD-A39Y-01	KIF21A	ENST00000544797.2,ENST00000552961.1,ENST00000361418.5,ENST00000541463.2,ENST00000395670.3,ENST00000547733.1,ENST00000551264.1,ENST00000361961.3	chr12	39688225:39688319:39695281:39695481:39696766:39696937,	39695282	39695481	39695396	39695396	Frame_Shift_Del	C	-	p.G1607fs
LIHC	TCGA-DD-A39Y-01	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745682	39745682	Frame_Shift_Del	A	-	p.S524fs
LIHC	TCGA-DD-A39Y-01	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745735	39745735	Frame_Shift_Del	T	-	p.N506fs
LIHC	TCGA-DD-A39Y-01	C12orf40	ENST00000324616.5,ENST00000468200.2	chr12	40078668:40078729:40085850:40085914:40110557:40110640,	40085851	40085914	40085883	40085883	Frame_Shift_Del	A	-	p.L460fs
LIHC	TCGA-DD-A39Y-01	SLC2A13	ENST00000280871.4	chr12	40265599:40265763:40345058:40345167:40422102:40422311,	40345059	40345167	40345116	40345116	Frame_Shift_Del	A	-	p.L326fs
LIHC	TCGA-DD-A39Y-01	SLC2A13	ENST00000280871.4	chr12	40265599:40265763:40345058:40345167:40422102:40422311,	40345059	40345167	40345131	40345131	Frame_Shift_Del	G	-	p.P321fs
LIHC	TCGA-DD-A39Y-01	SLC2A13	ENST00000380858.1	chr12	40422102:40422311:40441852:40442012:40499054:40499661,	40441853	40442012	40441929	40441929	Frame_Shift_Del	G	-	p.L214fs
LIHC	TCGA-DD-A39Y-01	LRRK2	ENST00000298910.7,ENST00000430804.1	chr12	40758643:40758852:40760807:40760879:40761445:40761563,	40760808	40760879	40760816	40760816	Frame_Shift_Del	A	-	p.K2467fs
LIHC	TCGA-DD-A39Y-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148934	44148934	Frame_Shift_Del	T	-	p.I39fs
LIHC	TCGA-DD-A39Y-01	TMEM117	ENST00000266534.3,ENST00000551577.1	chr12	44238666:44238731:44338012:44338145:44605072:44605170,44238666:44238731:44338012:44338145:44537327:44537427,	44338013	44338145	44338029	44338029	Frame_Shift_Del	A	-	p.L98fs
LIHC	TCGA-DD-A39Y-01	TMEM117	ENST00000550495.1,ENST00000266534.3,ENST00000546868.1,ENST00000550623.1,ENST00000553253.1,ENST00000536799.1	chr12	44605072:44605170:44693362:44693522:44770377:44770439,	44693363	44693522	44693371	44693371	Frame_Shift_Del	T	-	p.L206fs
LIHC	TCGA-DD-A39Y-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320542	46320542	Frame_Shift_Del	T	-	p.N666fs
LIHC	TCGA-DD-A39Y-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321943	46321943	Frame_Shift_Del	T	-	p.N199fs
LIHC	TCGA-DD-A39Y-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46322387	46322387	Frame_Shift_Del	T	-	p.K51fs
LIHC	TCGA-DD-A39Y-01	SLC38A1	ENST00000398637.5,ENST00000546893.1,ENST00000552197.1,ENST00000549049.1,ENST00000549633.1,ENST00000439706.1	chr12	46592510:46592526:46594880:46594981:46596792:46596872,	46594881	46594981	46594900	46594900	Frame_Shift_Del	A	-	p.F328fs
LIHC	TCGA-DD-A39Y-01	RPAP3	ENST00000005386.3,ENST00000432584.3	chr12	48063889:48064128:48073275:48073377:48073486:48073557,	48073276	48073377	48073326	48073326	Frame_Shift_Del	T	-	p.R413fs
LIHC	TCGA-DD-A39Y-01	RPAP3	ENST00000432584.3	chr12	48091379:48091502:48095246:48095387:48099734:48099769,	48095247	48095387	48095315	48095315	Frame_Shift_Del	T	-	p.T76fs
LIHC	TCGA-DD-A39Y-01	RAPGEF3	ENST00000171000.4,ENST00000548434.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000549151.1,ENST00000449771.2,ENST00000488250.1	chr12	48134087:48134178:48134424:48134606:48134697:48134823,	48134425	48134606	48134478	48134478	Frame_Shift_Del	G	-	p.P684fs
LIHC	TCGA-DD-A39Y-01	SLC48A1	ENST00000442218.2	chr12	48165952:48166103:48172810:48172978:48173927:48174072,48166990:48167223:48172810:48172978:48173927:48174072,	48172811	48172978	48172881	48172881	Frame_Shift_Del	G	-	p.K69fs
LIHC	TCGA-DD-A39Y-01	HDAC7	ENST00000477203.2	chr12	48189369:48189550:48189997:48190081:48190799:48190925,	48189998	48190081	48190072	48190072	Frame_Shift_Del	G	-	p.P238fs
LIHC	TCGA-DD-A39Y-01	HDAC7	ENST00000470668.1,ENST00000430670.1,ENST00000354334.3	chr12	48189449:48189550:48189989:48190081:48190799:48190925,	48189990	48190081	48190072	48190072	Frame_Shift_Del	G	-	p.P238fs
LIHC	TCGA-DD-A39Y-01	HDAC7	ENST00000445237.2,ENST00000380610.4,ENST00000430670.1,ENST00000450805.1,ENST00000427332.2,ENST00000354334.3,ENST00000434070.1,ENST00000417107.1,ENST00000080059.7	chr12	48192422:48192435:48192567:48192755:48213549:48213568,48192422:48192435:48192567:48192755:48196006:48196057,	48192568	48192755	48192633	48192633	Frame_Shift_Del	G	-	p.Q65fs
LIHC	TCGA-DD-A39Y-01	SENP1	ENST00000551330.1,ENST00000552189.1,ENST00000339976.6,ENST00000549518.1,ENST00000004980.5,ENST00000549595.1,ENST00000448372.1	chr12	48468472:48468576:48477373:48477545:48482583:48482743,	48477374	48477545	48477476	48477476	Frame_Shift_Del	A	-	p.F150fs
LIHC	TCGA-DD-A39Y-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000359794.5,ENST00000546964.1,ENST00000340802.6,ENST00000312352.7	chr12	48529073:48529166:48531503:48531629:48533067:48533132,	48531504	48531629	48531606	48531606	Frame_Shift_Del	C	-	p.P418fs
LIHC	TCGA-DD-A39Y-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000359794.5,ENST00000546964.1,ENST00000340802.6,ENST00000550802.1,ENST00000312352.7,ENST00000395233.2,ENST00000551804.1	chr12	48535755:48535849:48536564:48536729:48537535:48537597,	48536565	48536729	48536630	48536630	Frame_Shift_Del	G	-	p.M644fs
LIHC	TCGA-DD-A39Y-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000359794.5,ENST00000546964.1,ENST00000340802.6,ENST00000550802.1,ENST00000312352.7,ENST00000395233.2,ENST00000551804.1	chr12	48535755:48535849:48537535:48537597:48537828:48537856,48536564:48536729:48537535:48537597:48537828:48537856,	48537536	48537597	48537582	48537582	Frame_Shift_Del	G	-	p.R693fs
LIHC	TCGA-DD-A39Y-01	CCDC65	ENST00000320516.4,ENST00000266984.5,ENST00000547861.1	chr12	49308186:49308356:49310752:49310891:49312057:49312255,	49310753	49310891	49310883	49310883	Frame_Shift_Del	A	-	p.K201fs
LIHC	TCGA-DD-A39Y-01	KMT2D	ENST00000301067.7	chr12	49437650:49437781:49437982:49438087:49438185:49438305,	49437983	49438087	49438036	49438036	Frame_Shift_Del	T	-	p.K1712fs
LIHC	TCGA-DD-A39Y-01	KMT2D	ENST00000301067.7	chr12	49447760:49447923:49448089:49448199:49448310:49448534,	49448090	49448199	49448147	49448147	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-DD-A39Y-01	TUBA1A	ENST00000295766.5,ENST00000550767.1,ENST00000552924.1,ENST00000547939.1,ENST00000301071.7	chr12	49579707:49579773:49580092:49580241:49580393:49580616,	49580093	49580241	49580136	49580136	Frame_Shift_Del	C	-	p.G111fs
LIHC	TCGA-DD-A39Y-01	TROAP	ENST00000257909.3	chr12	49723645:49723774:49723927:49724726:49724996:49725190,	49723928	49724726	49723979	49723979	Frame_Shift_Del	G	-	p.G452fs
LIHC	TCGA-DD-A39Y-01	TROAP	ENST00000547923.1	chr12	49723639:49723774:49723927:49724356:49724443:49724726,	49723928	49724356	49723979	49723979	Frame_Shift_Del	G	-	p.G452fs
LIHC	TCGA-DD-A39Y-01	SPATS2	ENST00000549412.1,ENST00000552557.1,ENST00000321898.6,ENST00000553127.1,ENST00000552918.1	chr12	49888523:49888785:49890615:49890792:49893852:49893988,	49890616	49890792	49890733	49890733	Frame_Shift_Del	A	-	p.E215fs
LIHC	TCGA-DD-A39Y-01	SPATS2	ENST00000552557.1,ENST00000321898.6,ENST00000553127.1,ENST00000552918.1	chr12	49890615:49890792:49893852:49893988:49908337:49908396,	49893853	49893988	49893954	49893954	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-DD-A39Y-01	FMNL3	ENST00000293590.5,ENST00000352151.5,ENST00000549137.1,ENST00000550488.1,ENST00000335154.5	chr12	50043473:50043708:50044458:50044661:50044950:50045075,	50044459	50044661	50044620	50044620	Frame_Shift_Del	T	-	p.K613fs
LIHC	TCGA-DD-A39Y-01	TMBIM6	ENST00000552635.1	chr12	50152009:50152058:50152134:50152263:50152465:50152469,	50152135	50152263	50152216	50152216	Frame_Shift_Del	C	-	p.T187fs
LIHC	TCGA-DD-A39Y-01	TMBIM6	ENST00000549385.1,ENST00000395006.4,ENST00000547798.1,ENST00000547013.1,ENST00000423828.1,ENST00000552370.1,ENST00000552699.1,ENST00000550445.1,ENST00000267115.5	chr12	50152009:50152058:50152165:50152263:50152465:50152469,	50152166	50152263	50152216	50152216	Frame_Shift_Del	C	-	p.T187fs
LIHC	TCGA-DD-A39Y-01	TMBIM6	ENST00000549385.1,ENST00000395006.4,ENST00000547798.1,ENST00000547013.1,ENST00000423828.1,ENST00000552370.1,ENST00000552699.1,ENST00000267115.5	chr12	50152165:50152263:50152465:50152545:50153003:50153104,	50152466	50152545	50152535	50152535	Frame_Shift_Del	G	-	p.W226fs
LIHC	TCGA-DD-A39Y-01	TMBIM6	ENST00000549385.1,ENST00000395006.4,ENST00000547798.1,ENST00000547013.1,ENST00000423828.1,ENST00000552370.1,ENST00000552699.1,ENST00000267115.5	chr12	50152165:50152263:50152465:50152545:50153003:50153104,	50152466	50152545	50152538	50152538	Frame_Shift_Del	T	-	p.L227fs
LIHC	TCGA-DD-A39Y-01	TMBIM6	ENST00000549385.1,ENST00000395006.4,ENST00000547798.1,ENST00000547013.1,ENST00000423828.1,ENST00000552699.1,ENST00000267115.5	chr12	50152465:50152545:50153003:50153104:50155486:50155562,	50153004	50153104	50153047	50153047	Frame_Shift_Del	T	-	p.L244fs
LIHC	TCGA-DD-A39Y-01	NCKAP5L	ENST00000335999.6,ENST00000433948.1	chr12	50186228:50186371:50186460:50186769:50187134:50187216,	50186461	50186769	50186540	50186540	Frame_Shift_Del	C	-	p.G1190fs
LIHC	TCGA-DD-A39Y-01	SMARCD1	ENST00000381513.4	chr12	50484275:50484373:50488219:50488355:50492496:50492598,	50488220	50488355	50488239	50488239	Frame_Shift_Del	A	-	p.K386fs
LIHC	TCGA-DD-A39Y-01	LIMA1	ENST00000552720.1,ENST00000552909.1,ENST00000552783.1,ENST00000552823.1,ENST00000341247.4,ENST00000394943.3	chr12	50594559:50594667:50598334:50598483:50599766:50599851,	50598335	50598483	50598461	50598461	Frame_Shift_Del	A	-	p.F246fs
LIHC	TCGA-DD-A39Y-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000550260.1,ENST00000522085.1,ENST00000548993.1,ENST00000347328.5,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50824280:50824353:50829270:50829407:50831517:50831561,	50829271	50829407	50829361	50829361	Frame_Shift_Del	A	-	p.I163fs
LIHC	TCGA-DD-A39Y-01	SLC11A2	ENST00000262052.5,ENST00000547688.1,ENST00000262051.7,ENST00000541174.2,ENST00000545993.2,ENST00000394904.3,ENST00000546636.1,ENST00000547198.1,ENST00000546743.1	chr12	51388326:51388413:51389411:51389570:51390599:51390755,	51389412	51389570	51389557	51389557	Frame_Shift_Del	T	-	p.N311fs
LIHC	TCGA-DD-A39Y-01	CSRNP2	ENST00000228515.1	chr12	51461681:51461752:51467605:51467865:51470193:51470430,	51467606	51467865	51467654	51467654	Frame_Shift_Del	A	-	p.I121fs
LIHC	TCGA-DD-A39Y-01	TFCP2	ENST00000546822.1,ENST00000549867.1,ENST00000307660.4,ENST00000548115.1,ENST00000257915.5,ENST00000548108.1	chr12	51489805:51489823:51492558:51492701:51493437:51493525,	51492559	51492701	51492648	51492648	Frame_Shift_Del	T	-	p.I393fs
LIHC	TCGA-DD-A39Y-01	POU6F1	ENST00000550824.1,ENST00000333640.10,ENST00000389243.4	chr12	51586172:51586254:51589752:51589956:51591552:51591568,51586172:51586254:51589752:51589956:51590581:51590710,	51589753	51589956	51589812	51589812	Frame_Shift_Del	G	-	p.L64fs
LIHC	TCGA-DD-A39Y-01	SCN8A	ENST00000550891.1,ENST00000355133.3,ENST00000354534.6,ENST00000545061.1	chr12	52139686:52139819:52145138:52145377:52156286:52156460,	52145139	52145377	52145227	52145227	Frame_Shift_Del	A	-	p.I740fs
LIHC	TCGA-DD-A39Y-01	ACVRL1	ENST00000547400.1	chr12	52306253:52306319:52306882:52307134:52308222:52308345,	52306883	52307134	52307021	52307021	Frame_Shift_Del	G	-	p.R81fs
LIHC	TCGA-DD-A39Y-01	KRT6C	ENST00000252250.6	chr12	52864915:52865080:52865204:52865300:52865455:52865515,	52865205	52865300	52865273	52865273	Frame_Shift_Del	C	-	p.V282fs
LIHC	TCGA-DD-A39Y-01	SPRYD3	ENST00000547837.1,ENST00000301463.4,ENST00000550564.1	chr12	53462074:53462088:53467069:53467255:53468432:53468568,	53467070	53467255	53467101	53467101	Frame_Shift_Del	C	-	p.G221fs
LIHC	TCGA-DD-A39Y-01	ZNF740	ENST00000552593.1	chr12	53575538:53575776:53578674:53578824:53579170:53579260,53575460:53575974:53578674:53578824:53579170:53579260,	53578675	53578824	53578772	53578772	Frame_Shift_Del	C	-	p.A36fs
LIHC	TCGA-DD-A39Y-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53662807:53663869:53664161:53664266:53664461:53664582,	53664162	53664266	53664241	53664241	Frame_Shift_Del	T	-	p.V408fs
LIHC	TCGA-DD-A39Y-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1,ENST00000552600.1	chr12	53682321:53682483:53682873:53683087:53683187:53683244,	53682874	53683087	53682883	53682883	Frame_Shift_Del	C	-	p.T1573fs
LIHC	TCGA-DD-A39Y-01	TARBP2	ENST00000547064.1	chr12	53895843:53895968:53896810:53896913:53897513:53897592,53895843:53895968:53896810:53896913:53897496:53897592,53895402:53895492:53896810:53896913:53897496:53897592,53895149:53895245:53896810:53896913:53897496:53897592,	53896811	53896913	53896876	53896876	Frame_Shift_Del	G	-	p.G98fs
LIHC	TCGA-DD-A39Y-01	TARBP2	ENST00000548971.1	chr12	53895843:53895968:53896810:53896996:53897513:53897592,53895843:53895968:53896810:53896996:53897496:53897592,	53896811	53896996	53896876	53896876	Frame_Shift_Del	G	-	p.G98fs
LIHC	TCGA-DD-A39Y-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000549572.1,ENST00000551741.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000456234.2,ENST00000552817.1	chr12	53898484:53898599:53898918:53899046:53899432:53899470,	53898919	53899046	53898963	53898963	Frame_Shift_Del	A	-	p.K220fs
LIHC	TCGA-DD-A39Y-01	SMUG1	ENST00000337581.3,ENST00000504338.1,ENST00000513838.1,ENST00000514685.1	chr12	54576368:54576407:54577439:54577743:54582734:54582756,54576368:54576407:54577439:54577743:54581602:54581624,	54577440	54577743	54577477	54577477	Frame_Shift_Del	C	-	p.G83fs
LIHC	TCGA-DD-A39Y-01	COPZ1	ENST00000550027.1,ENST00000416254.2,ENST00000553009.1,ENST00000552362.1,ENST00000552218.1,ENST00000551779.1,ENST00000552848.1,ENST00000550171.1,ENST00000551412.1,ENST00000551962.1,ENST00000262061.2	chr12	54718934:54718965:54734330:54734399:54739243:54739259,54718934:54718965:54734330:54734399:54735989:54736071,	54734331	54734399	54734389	54734389	Frame_Shift_Del	T	-	p.L26fs
LIHC	TCGA-DD-A39Y-01	COPZ1	ENST00000549043.1	chr12	54718934:54718965:54734246:54734399:54735989:54736071,	54734247	54734399	54734389	54734389	Frame_Shift_Del	T	-	p.L26fs
LIHC	TCGA-DD-A39Y-01	ZNF385A	ENST00000338010.5,ENST00000550779.1,ENST00000551109.1,ENST00000552382.1,ENST00000546970.1,ENST00000352268.6,ENST00000551771.1,ENST00000394313.2	chr12	54763945:54764270:54764409:54764505:54764710:54764880,	54764410	54764505	54764418	54764418	Frame_Shift_Del	C	-	p.E288fs
LIHC	TCGA-DD-A39Y-01	ZNF385A	ENST00000338010.5,ENST00000550779.1,ENST00000551109.1,ENST00000552382.1,ENST00000546970.1,ENST00000352268.6,ENST00000551771.1,ENST00000394313.2	chr12	54763945:54764270:54764409:54764505:54764710:54764880,	54764410	54764505	54764426	54764426	Frame_Shift_Del	C	-	p.G285fs
LIHC	TCGA-DD-A39Y-01	ZNF385A	ENST00000550774.1,ENST00000338010.5,ENST00000551109.1,ENST00000552382.1,ENST00000546970.1,ENST00000546919.1,ENST00000547210.1,ENST00000394313.2	chr12	54764807:54764880:54767756:54767919:54769627:54769738,54765467:54765499:54767756:54767919:54778211:54778244,54765467:54765499:54767756:54767919:54769627:54769738,	54767757	54767919	54767798	54767798	Frame_Shift_Del	C	-	p.G107fs
LIHC	TCGA-DD-A39Y-01	ITGA5	ENST00000552387.1,ENST00000293379.4,ENST00000552564.1,ENST00000552431.1	chr12	54791149:54791271:54792380:54792482:54793428:54793542,	54792381	54792482	54792390	54792390	Frame_Shift_Del	T	-	p.K978fs
LIHC	TCGA-DD-A39Y-01	ITGA5	ENST00000293379.4,ENST00000551564.1,ENST00000552564.1	chr12	54795864:54795877:54795963:54796114:54796766:54796834,	54795964	54796114	54796064	54796064	Frame_Shift_Del	A	-	p.F678fs
LIHC	TCGA-DD-A39Y-01	MUCL1	ENST00000308796.6	chr12	55233152:55233231:55248899:55248941:55250553:55250676,55248320:55248424:55248899:55248941:55250553:55250676,	55248900	55248941	55248935	55248935	Frame_Shift_Del	C	-	p.P32fs
LIHC	TCGA-DD-A39Y-01	CD63	ENST00000552754.1	chr12	56120673:56120748:56120934:56121054:56122059:56122133,	56120935	56121054	56121008	56121008	Frame_Shift_Del	C	-	p.G61fs
LIHC	TCGA-DD-A39Y-01	CD63	ENST00000420846.3,ENST00000552692.1,ENST00000546457.1,ENST00000551173.1,ENST00000552164.1,ENST00000549117.1,ENST00000257857.4	chr12	56120673:56120748:56120934:56121123:56122059:56122133,	56120935	56121123	56121008	56121008	Frame_Shift_Del	C	-	p.G61fs
LIHC	TCGA-DD-A39Y-01	MMP19	ENST00000547685.1,ENST00000552872.1	chr12	56231626:56231791:56232283:56232518:56233279:56233525,	56232284	56232518	56232375	56232375	Frame_Shift_Del	G	-	p.L222fs
LIHC	TCGA-DD-A39Y-01	MMP19	ENST00000547685.1,ENST00000552872.1	chr12	56231626:56231791:56232283:56232518:56233279:56233525,	56232284	56232518	56232455	56232455	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A39Y-01	MMP19	ENST00000548629.1,ENST00000322569.4	chr12	56231626:56231791:56232389:56232518:56233279:56233525,	56232390	56232518	56232455	56232455	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A39Y-01	MMP19	ENST00000548629.1,ENST00000322569.4,ENST00000552872.1	chr12	56232389:56232518:56233279:56233525:56236136:56236222,56232389:56232518:56233279:56233525:56234450:56234597,	56233280	56233525	56233389	56233389	Frame_Shift_Del	C	-	p.G219fs
LIHC	TCGA-DD-A39Y-01	MMP19	ENST00000552763.1	chr12	56232389:56232518:56234450:56234666:56236136:56236222,	56234451	56234666	56234604	56234604	Frame_Shift_Del	G	-	p.H123fs
LIHC	TCGA-DD-A39Y-01	ERBB3	ENST00000415288.2,ENST00000551085.1,ENST00000267101.3,ENST00000551242.1	chr12	56480314:56480440:56481360:56481426:56481578:56481697,	56481361	56481426	56481363	56481363	Frame_Shift_Del	C	-	p.P185fs
LIHC	TCGA-DD-A39Y-01	ERBB3	ENST00000415288.2,ENST00000551085.1,ENST00000267101.3,ENST00000551242.1	chr12	56481360:56481426:56481578:56481697:56481804:56481848,	56481579	56481697	56481662	56481662	Frame_Shift_Del	G	-	p.G234fs
LIHC	TCGA-DD-A39Y-01	ESYT1	ENST00000394048.5,ENST00000541590.1,ENST00000267113.4,ENST00000547667.1	chr12	56531125:56531157:56531282:56531459:56531615:56531698,	56531283	56531459	56531342	56531342	Frame_Shift_Del	G	-	p.L666fs
LIHC	TCGA-DD-A39Y-01	RBMS2	ENST00000262031.5,ENST00000552916.1,ENST00000550726.1,ENST00000542360.1	chr12	56975616:56975663:56975842:56975936:56980632:56980710,	56975843	56975936	56975854	56975854	Frame_Shift_Del	C	-	p.A264fs
LIHC	TCGA-DD-A39Y-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57110533	57110533	Frame_Shift_Del	G	-	p.P1594fs
LIHC	TCGA-DD-A39Y-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57111007	57111007	Frame_Shift_Del	G	-	p.P1436fs
LIHC	TCGA-DD-A39Y-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112560	57112560	Frame_Shift_Del	G	-	p.P918fs
LIHC	TCGA-DD-A39Y-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57113608	57113608	Frame_Shift_Del	T	-	p.N569fs
LIHC	TCGA-DD-A39Y-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57113608	57113608	Frame_Shift_Del	T	-	p.N569fs
LIHC	TCGA-DD-A39Y-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57115043	57115043	Frame_Shift_Del	G	-	p.L91fs
LIHC	TCGA-DD-A39Y-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57115043	57115043	Frame_Shift_Del	G	-	p.L91fs
LIHC	TCGA-DD-A39Y-01	HSD17B6	ENST00000555805.1,ENST00000554643.1,ENST00000554150.1,ENST00000555159.1,ENST00000322165.1	chr12	57175873:57176016:57178636:57178800:57180908:57181129,	57178637	57178800	57178697	57178697	Frame_Shift_Del	G	-	p.T211fs
LIHC	TCGA-DD-A39Y-01	STAT6	ENST00000554764.1,ENST00000543873.2,ENST00000300134.3,ENST00000555222.1,ENST00000454075.3,ENST00000538913.2,ENST00000537215.2,ENST00000556155.1	chr12	57490632:57490761:57490850:57490916:57492287:57492373,	57490851	57490916	57490895	57490895	Frame_Shift_Del	G	-	p.P727fs
LIHC	TCGA-DD-A39Y-01	R3HDM2	ENST00000547019.1	chr12	57682791:57682823:57686354:57686450:57689181:57689290,57677606:57677839:57686354:57686450:57689181:57689290,	57686355	57686450	57686381	57686381	Frame_Shift_Del	C	-	p.V294fs
LIHC	TCGA-DD-A39Y-01	MARS	ENST00000546971.1,ENST00000315473.5,ENST00000262027.5,ENST00000545888.2	chr12	57905790:57905886:57906018:57906136:57906533:57906747,	57906019	57906136	57906043	57906043	Frame_Shift_Del	A	-	p.K554fs
LIHC	TCGA-DD-A39Y-01	MARS	ENST00000537638.2,ENST00000552914.1,ENST00000262027.5	chr12	57909702:57909774:57910027:57910120:57910217:57910347,	57910028	57910120	57910114	57910114	Frame_Shift_Del	A	-	p.T850fs
LIHC	TCGA-DD-A39Y-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919295	57919295	Frame_Shift_Del	G	-	p.G183fs
LIHC	TCGA-DD-A39Y-01	MBD6	ENST00000547844.1	chr12	57922784:57922792:57922942:57923108:57923716:57923926,	57922943	57923108	57922951	57922951	Frame_Shift_Del	C	-	p.V982fs
LIHC	TCGA-DD-A39Y-01	METTL1	ENST00000553125.1	chr12	58163362:58163461:58164876:58165040:58165756:58165859,58163554:58163739:58164876:58165040:58165262:58165388,	58164877	58165040	58164936	58164936	Frame_Shift_Del	T	-	p.K72fs
LIHC	TCGA-DD-A39Y-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62877949:62878013:62887694:62887822:62888795:62888927,	62887695	62887822	62887741	62887741	Frame_Shift_Del	T	-	p.G74fs
LIHC	TCGA-DD-A39Y-01	DPY19L2	ENST00000306389.7	chr12	64015017:64015117:64020248:64020306:64038182:64038276,	64020249	64020306	64020262	64020262	Frame_Shift_Del	A	-	p.F283fs
LIHC	TCGA-DD-A39Y-01	TBK1	ENST00000331710.5	chr12	64879705:64879797:64882266:64882368:64883820:64883899,	64882267	64882368	64882353	64882353	Frame_Shift_Del	A	-	p.E476fs
LIHC	TCGA-DD-A39Y-01	LEMD3	ENST00000308330.2	chr12	65632448:65632594:65633708:65633810:65633915:65634018,	65633709	65633810	65633758	65633758	Frame_Shift_Del	A	-	p.T657fs
LIHC	TCGA-DD-A39Y-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67700171	67700171	Frame_Shift_Del	T	-	p.L910fs
LIHC	TCGA-DD-A39Y-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67700316	67700316	Frame_Shift_Del	A	-	p.G956fs
LIHC	TCGA-DD-A39Y-01	CAND1	ENST00000544619.1,ENST00000545606.1	chr12	67703680:67703850:67703931:67704096:67705472:67705580,	67703932	67704096	67703978	67703978	Frame_Shift_Del	T	-	p.I1081fs
LIHC	TCGA-DD-A39Y-01	DYRK2	ENST00000344096.3	chr12	68042900:68042962:68043576:68043725:68050885:68051187,	68043577	68043725	68043595	68043595	Frame_Shift_Del	C	-	p.A23fs
LIHC	TCGA-DD-A39Y-01	MDM1	ENST00000303145.7,ENST00000541686.1,ENST00000545724.1	chr12	68719220:68719355:68720436:68720801:68724886:68725001,	68720437	68720801	68720489	68720489	Frame_Shift_Del	T	-	p.N149fs
LIHC	TCGA-DD-A39Y-01	RAP1B	ENST00000250559.9,ENST00000540209.1,ENST00000539091.1,ENST00000543393.1,ENST00000463493.1,ENST00000537460.1,ENST00000378985.3,ENST00000538980.1,ENST00000535492.1,ENST00000450214.2,ENST00000393436.5,ENST00000341355.5	chr12	69047904:69048032:69050085:69050229:69050880:69050919,	69050086	69050229	69050119	69050119	Frame_Shift_Del	T	-	p.L120fs
LIHC	TCGA-DD-A39Y-01	RAP1B	ENST00000250559.9,ENST00000540209.1,ENST00000539091.1,ENST00000543393.1,ENST00000463493.1,ENST00000537460.1,ENST00000378985.3,ENST00000538980.1,ENST00000535492.1,ENST00000450214.2,ENST00000393436.5,ENST00000341355.5	chr12	69047904:69048032:69050085:69050229:69050880:69050919,	69050086	69050229	69050211	69050211	Frame_Shift_Del	A	-	p.S150fs
LIHC	TCGA-DD-A39Y-01	NUP107	ENST00000535718.1,ENST00000229179.4,ENST00000539906.1,ENST00000378905.2	chr12	69090630:69090702:69094505:69094633:69096515:69096564,	69094506	69094633	69094562	69094562	Frame_Shift_Del	A	-	p.S203fs
LIHC	TCGA-DD-A39Y-01	NUP107	ENST00000538993.1,ENST00000229179.4,ENST00000539906.1	chr12	69120278:69120397:69121130:69121169:69124889:69125040,	69121131	69121169	69121154	69121154	Frame_Shift_Del	A	-	p.L573fs
LIHC	TCGA-DD-A39Y-01	CPM	ENST00000546373.1,ENST00000338356.3,ENST00000551568.1,ENST00000551897.1	chr12	69252702:69252851:69260675:69260828:69263104:69263275,	69260676	69260828	69260727	69260727	Frame_Shift_Del	A	-	p.W297fs
LIHC	TCGA-DD-A39Y-01	CCT2	ENST00000299300.6,ENST00000544368.2,ENST00000550010.1,ENST00000543146.2	chr12	69981929:69982042:69983264:69983467:69985838:69985939,	69983265	69983467	69983292	69983292	Frame_Shift_Del	T	-	p.D111fs
LIHC	TCGA-DD-A39Y-01	CCT2	ENST00000299300.6,ENST00000544368.2,ENST00000543146.2	chr12	69991465:69991546:69991747:69991851:69992101:69992201,	69991748	69991851	69991807	69991807	Frame_Shift_Del	A	-	p.K384fs
LIHC	TCGA-DD-A39Y-01	RAB3IP	ENST00000378809.4,ENST00000362025.5,ENST00000325555.9,ENST00000552199.1,ENST00000547591.1,ENST00000550647.1,ENST00000417413.3,ENST00000247833.7,ENST00000550536.1,ENST00000551641.1,ENST00000483530.2,ENST00000378815.6,ENST00000553099.1	chr12	70178499:70178595:70188216:70188294:70188920:70188996,	70188217	70188294	70188276	70188276	Frame_Shift_Del	A	-	p.L238fs
LIHC	TCGA-DD-A39Y-01	TSPAN8	ENST00000247829.3,ENST00000552128.1,ENST00000546561.1,ENST00000393330.2	chr12	71526472:71526604:71531732:71531840:71531935:71532010,	71531733	71531840	71531806	71531806	Frame_Shift_Del	T	-	p.N124fs
LIHC	TCGA-DD-A39Y-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3,ENST00000546771.1	chr12	72008985:72009096:72013094:72013189:72013705:72013745,	72013095	72013189	72013097	72013097	Frame_Shift_Del	A	-	p.F1714fs
LIHC	TCGA-DD-A39Y-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72013094:72013189:72013705:72013904:72013989:72014095,	72013706	72013904	72013758	72013758	Frame_Shift_Del	T	-	p.N1666fs
LIHC	TCGA-DD-A39Y-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72032197:72032295:72036215:72036339:72037874:72038098,	72036216	72036339	72036228	72036228	Frame_Shift_Del	T	-	p.T539fs
LIHC	TCGA-DD-A39Y-01	GLIPR1L2	ENST00000378692.3,ENST00000320460.4,ENST00000441218.1,ENST00000550916.1	chr12	75804213:75804459:75807377:75807481:75816683:75816712,	75807378	75807481	75807428	75807428	Frame_Shift_Del	A	-	p.S177fs
LIHC	TCGA-DD-A39Y-01	KRR1	ENST00000229214.4	chr12	75895702:75895780:75897683:75897854:75898977:75899034,	75897684	75897854	75897734	75897734	Frame_Shift_Del	T	-	p.T261fs
LIHC	TCGA-DD-A39Y-01	NAP1L1	ENST00000552147.1,ENST00000542344.1	chr12	76448827:76448870:76449812:76449938:76453577:76453658,	76449813	76449938	76449846	76449846	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-DD-A39Y-01	NAP1L1	ENST00000535020.2,ENST00000547529.2,ENST00000547773.1,ENST00000393263.3,ENST00000544816.1,ENST00000549596.1,ENST00000548273.1,ENST00000548044.1,ENST00000551992.1,ENST00000261182.8,ENST00000552056.1	chr12	76448827:76448870:76449812:76449941:76453917:76454059,76448827:76448870:76449812:76449941:76453577:76453658,	76449813	76449941	76449846	76449846	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-DD-A39Y-01	NAP1L1	ENST00000552147.1,ENST00000542344.1	chr12	76448827:76448870:76449812:76449938:76453577:76453658,	76449813	76449938	76449900	76449900	Frame_Shift_Del	T	-	p.K157fs
LIHC	TCGA-DD-A39Y-01	NAP1L1	ENST00000535020.2,ENST00000547529.2,ENST00000547773.1,ENST00000393263.3,ENST00000544816.1,ENST00000549596.1,ENST00000548273.1,ENST00000548044.1,ENST00000551992.1,ENST00000261182.8,ENST00000552056.1	chr12	76448827:76448870:76449812:76449941:76453917:76454059,76448827:76448870:76449812:76449941:76453577:76453658,	76449813	76449941	76449900	76449900	Frame_Shift_Del	T	-	p.K157fs
LIHC	TCGA-DD-A39Y-01	OSBPL8	ENST00000393250.4,ENST00000393249.2,ENST00000261183.3	chr12	76752485:76752591:76762993:76763081:76763416:76763602,	76762994	76763081	76763036	76763036	Frame_Shift_Del	T	-	p.K762fs
LIHC	TCGA-DD-A39Y-01	NAV3	ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78516041:78516208:78520946:78520988:78522485:78522646,	78520947	78520988	78520975	78520975	Frame_Shift_Del	A	-	p.K1424fs
LIHC	TCGA-DD-A39Y-01	OTOGL	ENST00000546620.1,ENST00000551340.1,ENST00000547103.1,ENST00000550182.1,ENST00000298820.3,ENST00000458043.2	chr12	80761340:80761519:80761984:80762089:80764349:80764469,	80761985	80762089	80762036	80762036	Frame_Shift_Del	A	-	p.K2179fs
LIHC	TCGA-DD-A39Y-01	PTPRQ	ENST00000266688.5	chr12	80935333:80935624:80935867:80936143:80936508:80936660,	80935868	80936143	80935900	80935900	Frame_Shift_Del	A	-	p.K1156fs
LIHC	TCGA-DD-A39Y-01	PTPRQ	ENST00000266688.5	chr12	80935333:80935624:80935867:80936143:80936508:80936660,	80935868	80936143	80936071	80936071	Frame_Shift_Del	T	-	p.F1214fs
LIHC	TCGA-DD-A39Y-01	PTPRQ	ENST00000266688.5	chr12	80940334:80940476:80943243:80943513:80981907:80982231,	80943244	80943513	80943384	80943384	Frame_Shift_Del	C	-	p.P1382fs
LIHC	TCGA-DD-A39Y-01	PTPRQ	ENST00000266688.5	chr12	81013932:81014155:81015839:81015913:81025970:81026070,	81015840	81015913	81015894	81015894	Frame_Shift_Del	T	-	p.S1885fs
LIHC	TCGA-DD-A39Y-01	METTL25	ENST00000248306.3,ENST00000548432.1	chr12	82850505:82850599:82870422:82870497:82871059:82871131,	82870423	82870497	82870488	82870488	Frame_Shift_Del	T	-	p.A546fs
LIHC	TCGA-DD-A39Y-01	TMTC2	ENST00000321196.3,ENST00000548305.1	chr12	83081259:83081448:83250788:83251359:83289596:83290425,	83250789	83251359	83251082	83251082	Frame_Shift_Del	A	-	p.H120fs
LIHC	TCGA-DD-A39Y-01	TMTC2	ENST00000321196.3,ENST00000551915.1,ENST00000549919.1,ENST00000548305.1	chr12	83250788:83251359:83289596:83290425:83324209:83324324,	83289597	83290425	83290306	83290306	Frame_Shift_Del	T	-	p.I449fs
LIHC	TCGA-DD-A39Y-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450322	85450322	Frame_Shift_Del	A	-	p.Q584fs
LIHC	TCGA-DD-A39Y-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454712	88454712	Frame_Shift_Del	T	-	p.K2139fs
LIHC	TCGA-DD-A39Y-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88465070:88465226:88465557:88465703:88470998:88471121,	88465558	88465703	88465649	88465649	Frame_Shift_Del	T	-	p.I1922fs
LIHC	TCGA-DD-A39Y-01	CEP290	ENST00000397838.3,ENST00000552810.1,ENST00000547926.2,ENST00000604024.1	chr12	88512259:88512347:88512419:88512520:88513890:88514053,	88512420	88512520	88512423	88512423	Frame_Shift_Del	T	-	p.K540fs
LIHC	TCGA-DD-A39Y-01	CEP290	ENST00000309041.7,ENST00000552810.1,ENST00000547926.2	chr12	88524321:88524342:88524941:88524995:88530419:88530563,	88524942	88524995	88524954	88524954	Frame_Shift_Del	T	-	p.K161fs
LIHC	TCGA-DD-A39Y-01	CEP290	ENST00000309041.7,ENST00000552810.1,ENST00000547926.2	chr12	88524941:88524995:88530419:88530563:88532921:88532968,	88530420	88530563	88530454	88530454	Frame_Shift_Del	T	-	p.K136fs
LIHC	TCGA-DD-A39Y-01	TMTC3	ENST00000547034.1,ENST00000266712.6	chr12	88536083:88536264:88542064:88542281:88548064:88548101,88536083:88536264:88542064:88542281:88547067:88547286,	88542065	88542281	88542178	88542178	Frame_Shift_Del	T	-	p.V29fs
LIHC	TCGA-DD-A39Y-01	POC1B	ENST00000378528.2,ENST00000549035.1,ENST00000541909.1,ENST00000313546.3,ENST00000547496.1,ENST00000393179.4	chr12	89814930:89815034:89818937:89819156:89853414:89853495,	89818938	89819156	89819042	89819042	Frame_Shift_Del	T	-	p.T280fs
LIHC	TCGA-DD-A39Y-01	DCN	ENST00000052754.5,ENST00000393155.1,ENST00000552962.1	chr12	91550851:91550965:91552072:91552286:91558381:91558494,	91552073	91552286	91552231	91552231	Frame_Shift_Del	G	-	p.P127fs
LIHC	TCGA-DD-A39Y-01	DCN	ENST00000549513.1,ENST00000052754.5,ENST00000393155.1,ENST00000550563.1,ENST00000552145.1,ENST00000552962.1,ENST00000547937.1	chr12	91540012:91540029:91558381:91558494:91572118:91572178,91552252:91552286:91558381:91558494:91572118:91572329,	91558382	91558494	91558429	91558429	Frame_Shift_Del	T	-	p.I93fs
LIHC	TCGA-DD-A39Y-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93221687:93221837:93226287:93226626:93236240:93236357,	93226288	93226626	93226495	93226495	Frame_Shift_Del	A	-	p.L349fs
LIHC	TCGA-DD-A39Y-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93221687:93221837:93226287:93226626:93236240:93236357,	93226288	93226626	93226544	93226544	Frame_Shift_Del	T	-	p.K333fs
LIHC	TCGA-DD-A39Y-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93247690:93247730:93251050:93251116:93251206:93251261,	93251051	93251116	93251072	93251072	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-DD-A39Y-01	NUDT4	ENST00000547014.1,ENST00000337179.5	chr12	93788401:93788495:93789264:93789309:93792546:93792631,93788384:93788495:93789264:93789309:93792543:93792631,	93789265	93789309	93789279	93789279	Frame_Shift_Del	A	-	p.G75fs
LIHC	TCGA-DD-A39Y-01	PLXNC1	ENST00000258526.4,ENST00000551850.1,ENST00000546733.1	chr12	94562928:94563069:94575221:94575356:94580148:94580249,	94575222	94575356	94575262	94575262	Frame_Shift_Del	T	-	p.V415fs
LIHC	TCGA-DD-A39Y-01	PLXNC1	ENST00000545312.1,ENST00000258526.4,ENST00000547057.1	chr12	94691091:94691199:94692407:94692571:94694685:94694833,	94692408	94692571	94692430	94692430	Frame_Shift_Del	A	-	p.E1366fs
LIHC	TCGA-DD-A39Y-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603186	95603186	Frame_Shift_Del	T	-	p.N625fs
LIHC	TCGA-DD-A39Y-01	VEZT	ENST00000550803.1,ENST00000547484.1	chr12	95645742:95645847:95650925:95651015:95656681:95656835,95645742:95645847:95650925:95651015:95652020:95652058,95650325:95650398:95650925:95651015:95656681:95656835,95650325:95650398:95650925:95651015:95652020:95652058,	95650926	95651015	95650969	95650969	Frame_Shift_Del	T	-	p.I71fs
LIHC	TCGA-DD-A39Y-01	VEZT	ENST00000549624.1	chr12	95645742:95645847:95650929:95651015:95656681:95656835,95650325:95650398:95650929:95651015:95656681:95656835,	95650930	95651015	95650969	95650969	Frame_Shift_Del	T	-	p.I71fs
LIHC	TCGA-DD-A39Y-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95911918:95912129:95914772:95914978:95918455:95918564,	95914773	95914978	95914816	95914816	Frame_Shift_Del	A	-	p.F632fs
LIHC	TCGA-DD-A39Y-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96052861:96052998:96059585:96059756:96076482:96076598,96052861:96052998:96059585:96059756:96063853:96063922,	96059586	96059756	96059704	96059704	Frame_Shift_Del	G	-	p.V544fs
LIHC	TCGA-DD-A39Y-01	CCDC38	ENST00000344280.3	chr12	96284609:96284708:96288766:96288924:96292162:96292243,	96288767	96288924	96288870	96288870	Frame_Shift_Del	A	-	p.F223fs
LIHC	TCGA-DD-A39Y-01	HAL	ENST00000261208.3,ENST00000538703.1,ENST00000546999.1,ENST00000548808.1,ENST00000541929.1,ENST00000544080.2	chr12	96370375:96370484:96371721:96371856:96374333:96374446,	96371722	96371856	96371777	96371777	Frame_Shift_Del	G	-	p.S533fs
LIHC	TCGA-DD-A39Y-01	TMPO	ENST00000343315.5	chr12	98938007:98938127:98938219:98938315:98938728:98938839,98931252:98931350:98938219:98938315:98938728:98938839,	98938220	98938315	98938304	98938304	Frame_Shift_Del	A	-	p.N290fs
LIHC	TCGA-DD-A39Y-01	TMPO	ENST00000393053.2	chr12	98938728:98938839:98940136:98940225:98941350:98941479,98931252:98931350:98940136:98940225:98941350:98941479,	98940137	98940225	98940144	98940144	Frame_Shift_Del	A	-	p.E333fs
LIHC	TCGA-DD-A39Y-01	SLC25A3	ENST00000547534.1,ENST00000548847.1,ENST00000401722.3,ENST00000552981.1,ENST00000188376.5,ENST00000549338.1	chr12	98987756:98987913:98989504:98989626:98991633:98991812,	98989505	98989626	98989597	98989597	Frame_Shift_Del	C	-	p.P84fs
LIHC	TCGA-DD-A39Y-01	SLC25A3	ENST00000228318.3,ENST00000551917.1,ENST00000401722.3,ENST00000552981.1,ENST00000188376.5,ENST00000549338.1,ENST00000546766.1,ENST00000551123.1	chr12	98992299:98992481:98993732:98993905:98994948:98995059,	98993733	98993905	98993742	98993742	Frame_Shift_Del	G	-	p.K217fs
LIHC	TCGA-DD-A39Y-01	IKBIP	ENST00000299157.4	chr12	99007182:99008118:99028073:99028191:99038300:99038732,99018026:99020544:99028073:99028191:99038300:99038732,	99028074	99028191	99028131	99028131	Frame_Shift_Del	T	-	p.K80fs
LIHC	TCGA-DD-A39Y-01	APAF1	ENST00000552268.1,ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000333991.1,ENST00000551964.1,ENST00000357310.1	chr12	99043264:99043462:99052937:99053121:99056233:99056346,	99052938	99053121	99052965	99052965	Frame_Shift_Del	T	-	p.V185fs
LIHC	TCGA-DD-A39Y-01	ANKS1B	ENST00000547776.2,ENST00000329257.7	chr12	100169325:100169439:100173648:100173750:100175799:100175875,	100173649	100173750	100173658	100173658	Frame_Shift_Del	G	-	p.L281fs
LIHC	TCGA-DD-A39Y-01	ACTR6	ENST00000551652.1,ENST00000188312.2,ENST00000553038.1,ENST00000549977.1,ENST00000547458.1,ENST00000551617.1,ENST00000546902.1,ENST00000552376.1	chr12	100598717:100598835:100599453:100599522:100601440:100601564,	100599454	100599522	100599500	100599500	Frame_Shift_Del	T	-	p.L78fs
LIHC	TCGA-DD-A39Y-01	ACTR6	ENST00000551517.1,ENST00000548180.1,ENST00000552064.1	chr12	100598717:100598835:100599453:100599535:100601440:100601564,	100599454	100599535	100599500	100599500	Frame_Shift_Del	T	-	p.L78fs
LIHC	TCGA-DD-A39Y-01	ACTR6	ENST00000553038.1	chr12	100599453:100599535:100601440:100601564:100603850:100603913,100599453:100599522:100601440:100601564:100603850:100603913,100599453:100599522:100601440:100601564:100604072:100604098,	100601441	100601564	100601475	100601475	Frame_Shift_Del	A	-	p.E97fs
LIHC	TCGA-DD-A39Y-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1	chr12	100656041:100656187:100657274:100657671:100660697:100660833,	100657275	100657671	100657315	100657315	Frame_Shift_Del	T	-	p.R172fs
LIHC	TCGA-DD-A39Y-01	SCYL2	ENST00000360820.2,ENST00000549687.1	chr12	100676909:100676925:100685280:100685438:100691808:100691953,	100685281	100685438	100685305	100685305	Frame_Shift_Del	A	-	p.K69fs
LIHC	TCGA-DD-A39Y-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100930289:100930388:100930725:100930825:100934449:100934596,	100930726	100930825	100930812	100930812	Frame_Shift_Del	A	-	p.T302fs
LIHC	TCGA-DD-A39Y-01	UTP20	ENST00000261637.4	chr12	101769401:101769534:101773148:101773336:101774917:101774989,	101773149	101773336	101773277	101773277	Frame_Shift_Del	A	-	p.K2510fs
LIHC	TCGA-DD-A39Y-01	MYBPC1	ENST00000547405.1,ENST00000547509.1,ENST00000392934.3,ENST00000553190.1,ENST00000541119.1,ENST00000361685.2,ENST00000536007.1,ENST00000361466.2,ENST00000551300.1,ENST00000545503.2	chr12	102056135:102056324:102057203:102057338:102061509:102061677,	102057204	102057338	102057274	102057274	Frame_Shift_Del	C	-	p.R752fs
LIHC	TCGA-DD-A39Y-01	CHPT1	ENST00000229266.3,ENST00000549128.1,ENST00000549872.1	chr12	102110507:102110590:102113900:102114032:102116945:102117032,	102113901	102114032	102113975	102113975	Frame_Shift_Del	A	-	p.S241fs
LIHC	TCGA-DD-A39Y-01	GNPTAB	ENST00000299314.7,ENST00000549940.1	chr12	102174334:102174399:102179789:102179995:102182325:102182367,	102179790	102179995	102179837	102179837	Frame_Shift_Del	T	-	p.N175fs
LIHC	TCGA-DD-A39Y-01	GNPTAB	ENST00000299314.7,ENST00000549940.1	chr12	102174334:102174399:102179789:102179995:102182325:102182367,	102179790	102179995	102179949	102179949	Frame_Shift_Del	T	-	p.M138fs
LIHC	TCGA-DD-A39Y-01	DRAM1	ENST00000549365.1,ENST00000258534.8	chr12	102291640:102291708:102295068:102295211:102301963:102302105,	102295069	102295211	102295141	102295141	Frame_Shift_Del	T	-	p.V91fs
LIHC	TCGA-DD-A39Y-01	PARPBP	ENST00000417507.2	chr12	102572369:102572548:102576326:102576405:102589089:102589225,102559506:102559661:102576326:102576405:102589728:102589865,	102576327	102576405	102576394	102576394	Frame_Shift_Del	A	-	p.K338fs
LIHC	TCGA-DD-A39Y-01	PAH	ENST00000551337.1	chr12	103306568:103306676:103310848:103311003:103351972:103352144,	103310849	103311003	103310883	103310883	Frame_Shift_Del	G	-	p.P9fs
LIHC	TCGA-DD-A39Y-01	C12orf42	ENST00000552977.1,ENST00000315192.8,ENST00000550650.1,ENST00000547347.1,ENST00000546526.1	chr12	103699759:103700123:103762664:103762776:103795384:103795453,103670927:103670988:103762664:103762776:103795384:103795453,	103762665	103762776	103762678	103762678	Frame_Shift_Del	A	-	p.F15fs
LIHC	TCGA-DD-A39Y-01	NT5DC3	ENST00000392876.3	chr12	104187187:104187290:104187714:104187775:104190671:104190809,	104187715	104187775	104187749	104187749	Frame_Shift_Del	T	-	p.K260fs
LIHC	TCGA-DD-A39Y-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104327733:104328065:104331472:104331584:104332117:104332237,	104331473	104331584	104331534	104331534	Frame_Shift_Del	A	-	p.K270fs
LIHC	TCGA-DD-A39Y-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104333286:104333403:104335187:104335325:104335406:104335484,	104335188	104335325	104335305	104335305	Frame_Shift_Del	A	-	p.K405fs
LIHC	TCGA-DD-A39Y-01	GLT8D2	ENST00000548660.1,ENST00000546436.1,ENST00000360814.4	chr12	104383057:104383355:104387169:104387282:104388112:104388279,	104387170	104387282	104387213	104387213	Frame_Shift_Del	C	-	p.G279fs
LIHC	TCGA-DD-A39Y-01	CHST11	ENST00000303694.5	chr12	104850778:104851292:104995683:104995769:105150726:105151117,104850750:104851307:104995683:104995769:105150726:105151117,	104995684	104995769	104995736	104995736	Frame_Shift_Del	A	-	p.R57fs
LIHC	TCGA-DD-A39Y-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3	chr12	105583768:105583933:105589038:105589127:105589222:105589279,	105589039	105589127	105589059	105589059	Frame_Shift_Del	T	-	p.K407fs
LIHC	TCGA-DD-A39Y-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000553097.1,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3,ENST00000546768.1	chr12	105601935:105601977:105605007:105605095:105610846:105610918,	105605008	105605095	105605019	105605019	Frame_Shift_Del	T	-	p.K121fs
LIHC	TCGA-DD-A39Y-01	POLR3B	ENST00000539066.1,ENST00000228347.4	chr12	106895100:106895214:106897858:106898032:106903197:106903974,	106897859	106898032	106898018	106898018	Frame_Shift_Del	G	-	p.L1086fs
LIHC	TCGA-DD-A39Y-01	RIC8B	ENST00000470628.2,ENST00000392839.2,ENST00000462949.1	chr12	107168523:107168607:107177774:107177822:107219503:107219598,107168523:107168607:107177774:107177822:107208473:107208648,	107177775	107177822	107177790	107177790	Frame_Shift_Del	A	-	p.K34fs
LIHC	TCGA-DD-A39Y-01	RIC8B	ENST00000392837.4	chr12	107254045:107254190:107264600:107264720:107268258:107268345,107254045:107254190:107264600:107264720:107279681:107279959,	107264601	107264720	107264710	107264710	Frame_Shift_Del	A	-	p.K521fs
LIHC	TCGA-DD-A39Y-01	WSCD2	ENST00000261400.3	chr12	108523582:108523703:108589058:108589991:108600065:108600180,	108589059	108589991	108589789	108589789	Frame_Shift_Del	G	-	p.E60fs
LIHC	TCGA-DD-A39Y-01	SART3	ENST00000546815.1	chr12	108936887:108936928:108938202:108938308:108938914:108939099,	108938203	108938308	108938246	108938246	Frame_Shift_Del	T	-	p.K246fs
LIHC	TCGA-DD-A39Y-01	SART3	ENST00000550322.1,ENST00000228284.3,ENST00000431469.2,ENST00000546728.1,ENST00000547528.1	chr12	108936887:108936928:108938202:108938254:108938914:108939099,	108938203	108938254	108938246	108938246	Frame_Shift_Del	T	-	p.K246fs
LIHC	TCGA-DD-A39Y-01	ACACB	ENST00000377848.3,ENST00000338432.7	chr12	109654507:109654511:109654600:109654725:109660311:109660425,	109654601	109654725	109654631	109654631	Frame_Shift_Del	G	-	p.R1157fs
LIHC	TCGA-DD-A39Y-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109690819:109690963:109692018:109692139:109693944:109694041,	109692019	109692139	109692057	109692057	Frame_Shift_Del	C	-	p.D2028fs
LIHC	TCGA-DD-A39Y-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109690819:109690963:109692018:109692139:109693944:109694041,	109692019	109692139	109692105	109692105	Frame_Shift_Del	C	-	p.D2044fs
LIHC	TCGA-DD-A39Y-01	FOXN4	ENST00000299162.5	chr12	109724452:109724549:109725201:109725329:109725648:109725762,	109725202	109725329	109725234	109725234	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-DD-A39Y-01	UBE3B	ENST00000539599.1,ENST00000434735.2,ENST00000449510.2,ENST00000280774.5,ENST00000342494.3	chr12	109937437:109937615:109939175:109939339:109940827:109940995,	109939176	109939339	109939223	109939223	Frame_Shift_Del	G	-	p.W389fs
LIHC	TCGA-DD-A39Y-01	GLTP	ENST00000540772.1,ENST00000544393.1	chr12	110295387:110295464:110296487:110296546:110318076:110318130,	110296488	110296546	110296502	110296502	Frame_Shift_Del	T	-	p.S50fs
LIHC	TCGA-DD-A39Y-01	GIT2	ENST00000320063.9,ENST00000547815.1,ENST00000457474.2,ENST00000360185.4,ENST00000553118.1,ENST00000551455.1,ENST00000356259.4,ENST00000551209.1,ENST00000338373.5,ENST00000355312.3,ENST00000343646.5,ENST00000550186.1,ENST00000361006.5,ENST00000354574.4	chr12	110399082:110399180:110399417:110399490:110403330:110403379,	110399418	110399490	110399440	110399440	Frame_Shift_Del	A	-	p.V289fs
LIHC	TCGA-DD-A39Y-01	ANKRD13A	ENST00000550404.1,ENST00000553025.1,ENST00000261739.4	chr12	110450929:110451054:110454192:110454238:110456149:110456293,	110454193	110454238	110454201	110454201	Frame_Shift_Del	T	-	p.D121fs
LIHC	TCGA-DD-A39Y-01	C12orf76	ENST00000309050.5	chr12	110494993:110495101:110496792:110496968:110503664:110503838,	110496793	110496968	110496915	110496915	Frame_Shift_Del	A	-	p.F23fs
LIHC	TCGA-DD-A39Y-01	IFT81	ENST00000550156.1,ENST00000242591.5,ENST00000361948.4,ENST00000552912.1	chr12	110566754:110566935:110570351:110570441:110572752:110572818,	110570352	110570441	110570376	110570376	Frame_Shift_Del	A	-	p.K152fs
LIHC	TCGA-DD-A39Y-01	ATP2A2	ENST00000308664.6,ENST00000539276.2,ENST00000552636.1,ENST00000395494.2,ENST00000377685.5	chr12	110720517:110720600:110729824:110729929:110734403:110734517,	110729825	110729929	110729886	110729886	Frame_Shift_Del	T	-	p.I94fs
LIHC	TCGA-DD-A39Y-01	GPN3	ENST00000550228.1	chr12	110893642:110893735:110895314:110895439:110897499:110897667,110891616:110891676:110895314:110895439:110897499:110897667,	110895315	110895439	110895351	110895351	Frame_Shift_Del	A	-	p.F177fs
LIHC	TCGA-DD-A39Y-01	FAM216A	ENST00000548869.1,ENST00000538285.2,ENST00000377673.5	chr12	110910882:110910923:110922882:110923004:110924129:110924259,	110922883	110923004	110922942	110922942	Frame_Shift_Del	A	-	p.K82fs
LIHC	TCGA-DD-A39Y-01	VPS29	ENST00000548259.1	chr12	110930800:110931036:110933816:110934008:110937339:110937351,110930800:110931036:110933816:110934008:110939853:110939883,	110933817	110934008	110933940	110933940	Frame_Shift_Del	T	-	p.K24fs
LIHC	TCGA-DD-A39Y-01	RAD9B	ENST00000433301.1	chr12	110944383:110944498:110952854:110952961:110956480:110956511,	110952855	110952961	110952888	110952888	Frame_Shift_Del	A	-	p.S103fs
LIHC	TCGA-DD-A39Y-01	PPTC7	ENST00000548721.1,ENST00000354300.3	chr12	110974573:110974900:110975948:110976078:110977626:110977750,	110975949	110976078	110975986	110975986	Frame_Shift_Del	A	-	p.F273fs
LIHC	TCGA-DD-A39Y-01	TCTN1	ENST00000490514.1,ENST00000397656.4,ENST00000377654.3,ENST00000495659.2,ENST00000551590.1,ENST00000397659.4,ENST00000464809.1	chr12	111072200:111072268:111072474:111072584:111074285:111074306,111070276:111070364:111072474:111072584:111074285:111074306,	111072475	111072584	111072557	111072557	Frame_Shift_Del	T	-	p.A265fs
LIHC	TCGA-DD-A39Y-01	ATXN2	ENST00000389153.4,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111947722:111947802:111948188:111948386:111951160:111951343,	111948189	111948386	111948366	111948366	Frame_Shift_Del	T	-	p.T687fs
LIHC	TCGA-DD-A39Y-01	BRAP	ENST00000419234.4,ENST00000539060.1,ENST00000327551.6,ENST00000547043.1	chr12	112087742:112087846:112093369:112093459:112096539:112096649,	112093370	112093459	112093407	112093407	Frame_Shift_Del	T	-	p.N425fs
LIHC	TCGA-DD-A39Y-01	BRAP	ENST00000419234.4,ENST00000327551.6	chr12	112103442:112103591:112110464:112110578:112116954:112117140,	112110465	112110578	112110560	112110560	Frame_Shift_Del	A	-	p.Y218fs
LIHC	TCGA-DD-A39Y-01	ACAD10	ENST00000546647.1,ENST00000508303.1,ENST00000455480.2,ENST00000413681.3,ENST00000313698.4,ENST00000504803.1,ENST00000392636.2	chr12	112182446:112182847:112183947:112184088:112184852:112184990,	112183948	112184088	112184008	112184008	Frame_Shift_Del	A	-	p.K758fs
LIHC	TCGA-DD-A39Y-01	ACAD10	ENST00000546647.1,ENST00000508303.1,ENST00000455480.2,ENST00000413681.3,ENST00000313698.4,ENST00000504803.1,ENST00000392636.2	chr12	112182446:112182847:112183947:112184088:112184852:112184990,	112183948	112184088	112184081	112184081	Frame_Shift_Del	C	-	p.A781fs
LIHC	TCGA-DD-A39Y-01	TMEM116	ENST00000548283.2	chr12	112370389:112370463:112371689:112374634:112374963:112375047,	112371690	112374634	112371796	112371796	Frame_Shift_Del	A	-	p.F117fs
LIHC	TCGA-DD-A39Y-01	TMEM116	ENST00000550831.3,ENST00000547878.2,ENST00000354825.3,ENST00000552374.2,ENST00000355445.3,ENST00000437003.2	chr12	112370389:112370463:112371689:112371834:112374963:112375047,112370389:112370463:112371689:112371834:112374495:112374634,	112371690	112371834	112371796	112371796	Frame_Shift_Del	A	-	p.F117fs
LIHC	TCGA-DD-A39Y-01	TMEM116	ENST00000548283.2	chr12	112370389:112370463:112371689:112374634:112374963:112375047,	112371690	112374634	112374520	112374520	Frame_Shift_Del	A	-	p.F96fs
LIHC	TCGA-DD-A39Y-01	TMEM116	ENST00000550831.3,ENST00000547878.2,ENST00000354825.3,ENST00000552374.2,ENST00000355445.3,ENST00000437003.2	chr12	112371689:112371834:112374495:112374634:112374963:112375047,	112374496	112374634	112374520	112374520	Frame_Shift_Del	A	-	p.F96fs
LIHC	TCGA-DD-A39Y-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2	chr12	112684704:112684880:112685265:112685354:112685870:112685975,	112685266	112685354	112685348	112685348	Frame_Shift_Del	T	-	p.M1273fs
LIHC	TCGA-DD-A39Y-01	OAS1	ENST00000549820.1	chr12	113344856:113345024:113346340:113346629:113348855:113349040,113344856:113345024:113346340:113346629:113348902:113349040,	113346341	113346629	113346584	113346584	Frame_Shift_Del	G	-	p.G142fs
LIHC	TCGA-DD-A39Y-01	OAS1	ENST00000551241.1,ENST00000445409.2,ENST00000550689.1,ENST00000452357.2,ENST00000202917.5	chr12	113346427:113346629:113348855:113349040:113354313:113354383,	113348856	113349040	113348930	113348930	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-DD-A39Y-01	OAS1	ENST00000549820.1	chr12	113346427:113346629:113348902:113349040:113354313:113354383,	113348903	113349040	113348930	113348930	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-DD-A39Y-01	OAS3	ENST00000228928.7	chr12	113376350:113376512:113382280:113382456:113384547:113384784,113379452:113379657:113382280:113382456:113384547:113384784,	113382281	113382456	113382349	113382349	Frame_Shift_Del	G	-	p.G178fs
LIHC	TCGA-DD-A39Y-01	DDX54	ENST00000314045.7,ENST00000306014.5	chr12	113603448:113603522:113603606:113603837:113607574:113607709,	113603607	113603837	113603629	113603629	Frame_Shift_Del	C	-	p.G541fs
LIHC	TCGA-DD-A39Y-01	DDX54	ENST00000314045.7,ENST00000306014.5	chr12	113603448:113603522:113603606:113603837:113607574:113607709,	113603607	113603837	113603732	113603732	Frame_Shift_Del	C	-	p.G507fs
LIHC	TCGA-DD-A39Y-01	DDX54	ENST00000314045.7,ENST00000306014.5	chr12	113607574:113607709:113610157:113610368:113612444:113612576,	113610158	113610368	113610189	113610189	Frame_Shift_Del	G	-	p.P416fs
LIHC	TCGA-DD-A39Y-01	IQCD	ENST00000546692.1	chr12	113638567:113638618:113645242:113646314:113658801:113658832,	113645243	113646314	113645821	113645821	Frame_Shift_Del	T	-	p.R51fs
LIHC	TCGA-DD-A39Y-01	IQCD	ENST00000416617.2	chr12	113638567:113638618:113645242:113646064:113658801:113658832,	113645243	113646064	113645821	113645821	Frame_Shift_Del	T	-	p.R51fs
LIHC	TCGA-DD-A39Y-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000552542.1,ENST00000548465.1,ENST00000552642.1,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000552897.1,ENST00000550785.1	chr12	113698172:113698297:113703984:113704161:113705647:113705684,	113703985	113704161	113704017	113704017	Frame_Shift_Del	C	-	p.H162fs
LIHC	TCGA-DD-A39Y-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000550785.1	chr12	113705647:113705761:113706546:113706677:113707561:113707650,	113706547	113706677	113706638	113706638	Frame_Shift_Del	T	-	p.I279fs
LIHC	TCGA-DD-A39Y-01	PLBD2	ENST00000280800.3,ENST00000548997.1,ENST00000545182.2	chr12	113810453:113810612:113812278:113812379:113812597:113812665,	113812279	113812379	113812303	113812303	Frame_Shift_Del	A	-	p.K190fs
LIHC	TCGA-DD-A39Y-01	PLBD2	ENST00000280800.3,ENST00000545182.2	chr12	113824741:113824894:113825548:113825711:113826263:113827043,	113825549	113825711	113825694	113825694	Frame_Shift_Del	G	-	p.G530fs
LIHC	TCGA-DD-A39Y-01	SDSL	ENST00000553248.1,ENST00000403593.4,ENST00000345635.4	chr12	113866224:113866264:113866964:113867104:113871938:113872027,	113866965	113867104	113867032	113867032	Frame_Shift_Del	C	-	p.L94fs
LIHC	TCGA-DD-A39Y-01	SDSL	ENST00000553248.1,ENST00000546672.1,ENST00000403593.4,ENST00000345635.4	chr12	113871938:113872027:113873133:113873361:113874555:113874574,	113873134	113873361	113873280	113873280	Frame_Shift_Del	T	-	p.I197fs
LIHC	TCGA-DD-A39Y-01	RBM19	ENST00000392561.3,ENST00000552386.1,ENST00000545145.2,ENST00000261741.5	chr12	114356196:114356252:114358415:114358495:114362501:114362562,	114358416	114358495	114358473	114358473	Frame_Shift_Del	A	-	p.F776fs
LIHC	TCGA-DD-A39Y-01	MED13L	ENST00000281928.3	chr12	116401211:116401324:116403886:116404048:116406744:116406902,	116403887	116404048	116403943	116403943	Frame_Shift_Del	G	-	p.Q2111fs
LIHC	TCGA-DD-A39Y-01	C12orf49	ENST00000536380.1,ENST00000547630.1	chr12	117157567:117157681:117158100:117158252:117160871:117161028,117157567:117157681:117158100:117158252:117175594:117175641,	117158101	117158252	117158244	117158244	Frame_Shift_Del	A	-	p.C93fs
LIHC	TCGA-DD-A39Y-01	FBXW8	ENST00000455858.2,ENST00000309909.5	chr12	117402501:117402659:117423010:117423207:117426467:117426674,	117423011	117423207	117423035	117423035	Frame_Shift_Del	G	-	p.R221fs
LIHC	TCGA-DD-A39Y-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117657879:117658074:117660519:117660668:117662820:117662942,	117660520	117660668	117660570	117660570	Frame_Shift_Del	C	-	p.V1309fs
LIHC	TCGA-DD-A39Y-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117718529:117718671:117723045:117723137:117723908:117724071,	117723046	117723137	117723057	117723057	Frame_Shift_Del	T	-	p.K457fs
LIHC	TCGA-DD-A39Y-01	TAOK3	ENST00000537305.1,ENST00000537952.1,ENST00000419821.2,ENST00000392533.3	chr12	118610261:118610465:118615005:118615134:118619175:118619412,	118615006	118615134	118615014	118615014	Frame_Shift_Del	T	-	p.I563fs
LIHC	TCGA-DD-A39Y-01	TAOK3	ENST00000541186.1,ENST00000542902.1,ENST00000419821.2,ENST00000392533.3,ENST00000541878.1	chr12	118682718:118682770:118693252:118693460:118704459:118704564,	118693253	118693460	118693301	118693301	Frame_Shift_Del	A	-	p.F24fs
LIHC	TCGA-DD-A39Y-01	TAOK3	ENST00000541186.1,ENST00000542902.1,ENST00000419821.2,ENST00000392533.3,ENST00000541878.1	chr12	118682718:118682770:118693252:118693460:118704459:118704564,	118693253	118693460	118693360	118693360	Frame_Shift_Del	C	-	p.V5fs
LIHC	TCGA-DD-A39Y-01	CCDC60	ENST00000327554.2	chr12	119926563:119926671:119937882:119937973:119942873:119943108,	119937883	119937973	119937911	119937911	Frame_Shift_Del	A	-	p.K197fs
LIHC	TCGA-DD-A39Y-01	PRKAB1	ENST00000229328.5,ENST00000545223.1,ENST00000545870.1,ENST00000541640.1,ENST00000540121.1	chr12	120112144:120112259:120114341:120114475:120117737:120117756,	120114342	120114475	120114416	120114416	Frame_Shift_Del	C	-	p.P204fs
LIHC	TCGA-DD-A39Y-01	CIT	ENST00000537607.1,ENST00000392520.2,ENST00000392521.2,ENST00000261833.7,ENST00000545913.1	chr12	120151007:120151099:120151272:120151453:120152001:120152139,	120151273	120151453	120151336	120151336	Frame_Shift_Del	G	-	p.P1475fs
LIHC	TCGA-DD-A39Y-01	MSI1	ENST00000257552.2	chr12	120783372:120783435:120783937:120784125:120785248:120785317,	120783938	120784125	120784098	120784098	Frame_Shift_Del	G	-	p.P297fs
LIHC	TCGA-DD-A39Y-01	MSI1	ENST00000257552.2	chr12	120802516:120802558:120805810:120805895:120805994:120806076,	120805811	120805895	120805858	120805858	Frame_Shift_Del	C	-	p.V74fs
LIHC	TCGA-DD-A39Y-01	RNF10	ENST00000535470.1	chr12	121003286:121003332:121004627:121004783:121008993:121009094,121003286:121003332:121004627:121004783:121013433:121013491,	121004628	121004783	121004645	121004645	Frame_Shift_Del	C	-	p.P635fs
LIHC	TCGA-DD-A39Y-01	HNF1A	ENST00000400024.2,ENST00000543427.1,ENST00000560968.1,ENST00000541924.1,ENST00000402929.1,ENST00000544413.1,ENST00000541395.1	chr12	121416871:121416897:121426635:121426835:121431322:121431509,	121426636	121426835	121426791	121426791	Frame_Shift_Del	C	-	p.A161fs
LIHC	TCGA-DD-A39Y-01	OASL	ENST00000339275.5	chr12	121469254:121469420:121471263:121471546:121476576:121476750,	121471264	121471546	121471396	121471396	Frame_Shift_Del	C	-	p.D117fs
LIHC	TCGA-DD-A39Y-01	CAMKK2	ENST00000404169.3,ENST00000402834.4,ENST00000347034.2,ENST00000324774.5	chr12	121675572:121678345:121682375:121682418:121682942:121683043,121678404:121678672:121682375:121682418:121682942:121683043,	121682376	121682418	121682412	121682412	Frame_Shift_Del	T	-	p.K520fs
LIHC	TCGA-DD-A39Y-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000337174.3,ENST00000402834.4,ENST00000392474.2,ENST00000446440.2,ENST00000347034.2,ENST00000324774.5,ENST00000392473.2,ENST00000538733.1	chr12	121698121:121698158:121701608:121701742:121706440:121706492,	121701609	121701742	121701645	121701645	Frame_Shift_Del	C	-	p.K242fs
LIHC	TCGA-DD-A39Y-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000402834.4	chr12	121708700:121708748:121711858:121712388:121735341:121735860,121708700:121708748:121711858:121712388:121734440:121734489,	121711859	121712388	121711906	121711906	Frame_Shift_Del	G	-	p.R143fs
LIHC	TCGA-DD-A39Y-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000402834.4	chr12	121708700:121708748:121711858:121712388:121735341:121735860,121708700:121708748:121711858:121712388:121734440:121734489,	121711859	121712388	121712259	121712259	Frame_Shift_Del	C	-	p.G24fs
LIHC	TCGA-DD-A39Y-01	ANAPC5	ENST00000441917.2,ENST00000535482.1,ENST00000344395.4,ENST00000541887.1,ENST00000544314.1,ENST00000261819.3,ENST00000535641.1	chr12	121747503:121747666:121756079:121756227:121756303:121756411,	121756080	121756227	121756183	121756183	Frame_Shift_Del	G	-	p.P597fs
LIHC	TCGA-DD-A39Y-01	ANAPC5	ENST00000539079.1	chr12	121747503:121747666:121756079:121756207:121756303:121756411,	121756080	121756207	121756183	121756183	Frame_Shift_Del	G	-	p.P597fs
LIHC	TCGA-DD-A39Y-01	KDM2B	ENST00000377069.4,ENST00000538503.1,ENST00000377071.4,ENST00000538046.2,ENST00000543025.1,ENST00000536437.1	chr12	121932381:121932468:121947369:121947842:121951078:121951205,	121947370	121947842	121947606	121947606	Frame_Shift_Del	T	-	p.R440fs
LIHC	TCGA-DD-A39Y-01	MORN3	ENST00000542364.1,ENST00000392462.2	chr12	122090980:122091165:122092179:122092339:122097096:122097254,122090633:122090714:122092179:122092339:122097096:122097254,	122092180	122092339	122092320	122092320	Frame_Shift_Del	A	-	p.F108fs
LIHC	TCGA-DD-A39Y-01	TMEM120B	ENST00000449592.2,ENST00000541467.1,ENST00000342607.6	chr12	122208812:122208878:122209393:122209455:122211326:122211419,	122209394	122209455	122209447	122209447	Frame_Shift_Del	T	-	p.I224fs
LIHC	TCGA-DD-A39Y-01	WDR66	ENST00000397454.2,ENST00000288912.4	chr12	122389385:122389436:122392025:122392240:122394979:122395174,	122392026	122392240	122392084	122392084	Frame_Shift_Del	A	-	p.Q460fs
LIHC	TCGA-DD-A39Y-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122794308:122794429:122801295:122801402:122803778:122803895,	122801296	122801402	122801318	122801318	Frame_Shift_Del	T	-	p.M1140fs
LIHC	TCGA-DD-A39Y-01	RSRC2	ENST00000527173.2,ENST00000532695.1	chr12	122991380:122991470:122992764:122992997:122995655:122995735,	122992765	122992997	122992797	122992797	Frame_Shift_Del	T	-	p.R335fs
LIHC	TCGA-DD-A39Y-01	RSRC2	ENST00000354654.2,ENST00000433877.2,ENST00000331738.7,ENST00000392442.2	chr12	122991380:122991470:122992764:122992994:122995655:122995735,	122992765	122992994	122992797	122992797	Frame_Shift_Del	T	-	p.R335fs
LIHC	TCGA-DD-A39Y-01	RSRC2	ENST00000525335.2	chr12	123005931:123005975:123006689:123006876:123011394:123011496,	123006690	123006876	123006781	123006781	Frame_Shift_Del	T	-	p.K24fs
LIHC	TCGA-DD-A39Y-01	RSRC2	ENST00000527399.3,ENST00000532695.1,ENST00000527796.2,ENST00000354654.2,ENST00000433877.2,ENST00000525387.1	chr12	123005931:123005975:123006689:123006846:123011394:123011483,	123006690	123006846	123006781	123006781	Frame_Shift_Del	T	-	p.K24fs
LIHC	TCGA-DD-A39Y-01	KNTC1	ENST00000450485.2,ENST00000333479.7	chr12	123024222:123024301:123026596:123026674:123028146:123028181,	123026597	123026674	123026632	123026632	Frame_Shift_Del	T	-	p.F162fs
LIHC	TCGA-DD-A39Y-01	KNTC1	ENST00000333479.7	chr12	123065149:123065217:123067251:123067532:123068824:123068997,	123067252	123067532	123067494	123067494	Frame_Shift_Del	A	-	p.L1075fs
LIHC	TCGA-DD-A39Y-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123339811:123339952:123340097:123340159:123340377:123340450,	123340098	123340159	123340131	123340131	Frame_Shift_Del	C	-	p.P344fs
LIHC	TCGA-DD-A39Y-01	ABCB9	ENST00000542678.1,ENST00000540971.1,ENST00000442833.2,ENST00000392439.3,ENST00000344275.7,ENST00000542448.1,ENST00000538895.1,ENST00000442028.2,ENST00000280560.8	chr12	123424753:123424831:123428937:123429066:123430571:123430769,123425492:123425542:123428937:123429066:123430571:123430767,	123428938	123429066	123429023	123429023	Frame_Shift_Del	C	-	p.G432fs
LIHC	TCGA-DD-A39Y-01	PITPNM2	ENST00000280562.5	chr12	123472780:123472897:123473270:123473419:123475091:123475256,	123473271	123473419	123473346	123473346	Frame_Shift_Del	G	-	p.P929fs
LIHC	TCGA-DD-A39Y-01	PITPNM2	ENST00000392428.1,ENST00000320201.4,ENST00000542749.1	chr12	123475091:123475256:123477045:123477216:123479347:123479475,	123477046	123477216	123477213	123477213	Frame_Shift_Del	A	-	p.F746fs
LIHC	TCGA-DD-A39Y-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123787370:123787447:123789128:123789266:123793856:123793949,	123789129	123789266	123789214	123789214	Frame_Shift_Del	T	-	p.K1229fs
LIHC	TCGA-DD-A39Y-01	DDX55	ENST00000542286.1,ENST00000238146.4	chr12	124101104:124101150:124102304:124102419:124103157:124103325,124101104:124101150:124102304:124102419:124103215:124103384,	124102305	124102419	124102415	124102415	Frame_Shift_Del	A	-	p.Q387fs
LIHC	TCGA-DD-A39Y-01	TCTN2	ENST00000426174.2,ENST00000303372.5	chr12	124163735:124163836:124171382:124171582:124172597:124172724,	124171383	124171582	124171534	124171534	Frame_Shift_Del	C	-	p.S239fs
LIHC	TCGA-DD-A39Y-01	DNAH10	ENST00000409039.3,ENST00000492261.1	chr12	124416487:124416655:124417877:124418058:124419167:124419313,	124417878	124418058	124417893	124417893	Frame_Shift_Del	C	-	p.P4320fs
LIHC	TCGA-DD-A39Y-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000542565.1,ENST00000458234.1	chr12	124970986:124971114:124979692:124979914:125020110:125020149,	124979693	124979914	124979758	124979758	Frame_Shift_Del	C	-	p.A14fs
LIHC	TCGA-DD-A39Y-01	SCARB1	ENST00000538291.1	chr12	125263044:125263132:125267228:125271049:125271951:125272003,	125267229	125271049	125267323	125267323	Frame_Shift_Del	T	-	p.K479fs
LIHC	TCGA-DD-A39Y-01	SCARB1	ENST00000261693.6,ENST00000376788.1	chr12	125263044:125263132:125267228:125267357:125270986:125271049,125263044:125263132:125267228:125267357:125270902:125271039,	125267229	125267357	125267323	125267323	Frame_Shift_Del	T	-	p.K479fs
LIHC	TCGA-DD-A39Y-01	SLC15A4	ENST00000266771.5	chr12	129293940:129294018:129294487:129294656:129299319:129299615,	129294488	129294656	129294525	129294525	Frame_Shift_Del	A	-	p.F325fs
LIHC	TCGA-DD-A39Y-01	SLC15A4	ENST00000376740.4	chr12	129293940:129294018:129294487:129294598:129299319:129299615,	129294488	129294598	129294525	129294525	Frame_Shift_Del	A	-	p.F325fs
LIHC	TCGA-DD-A39Y-01	PIWIL1	ENST00000245255.3	chr12	130842025:130842098:130845724:130845925:130846042:130846146,	130845725	130845925	130845773	130845773	Frame_Shift_Del	A	-	p.K573fs
LIHC	TCGA-DD-A39Y-01	ULK1	ENST00000541761.1,ENST00000321867.4	chr12	132401497:132401607:132401955:132402099:132403041:132403226,	132401956	132402099	132402003	132402003	Frame_Shift_Del	G	-	p.G745fs
LIHC	TCGA-DD-A39Y-01	PUS1	ENST00000440818.2,ENST00000376649.3,ENST00000443358.2,ENST00000542167.2	chr12	132423717:132423820:132425836:132426528:132428083:132428402,	132425837	132426528	132425908	132425908	Frame_Shift_Del	C	-	p.P153fs
LIHC	TCGA-DD-A39Y-01	NOC4L	ENST00000541954.1,ENST00000330579.1,ENST00000535343.1	chr12	132632616:132632651:132633153:132633204:132633328:132633440,	132633154	132633204	132633167	132633167	Frame_Shift_Del	T	-	p.V251fs
LIHC	TCGA-DD-A39Y-01	FBRSL1	ENST00000542306.1,ENST00000261673.6,ENST00000434748.2	chr12	133151081:133151150:133153384:133153517:133158024:133158102,	133153385	133153517	133153494	133153494	Frame_Shift_Del	C	-	p.A647fs
LIHC	TCGA-DD-A39Y-01	ANKLE2	ENST00000538766.1,ENST00000539605.1,ENST00000357997.5	chr12	133304617:133304749:133306264:133306856:133310970:133311046,	133306265	133306856	133306790	133306790	Frame_Shift_Del	T	-	p.N591fs
LIHC	TCGA-DD-A39Y-01	ZNF268	ENST00000541009.2,ENST00000536435.2,ENST00000416488.1,ENST00000228289.5	chr12	133758531:133758616:133764457:133764658:133768074:133768201,	133764458	133764658	133764559	133764559	Frame_Shift_Del	C	-	p.L45fs
LIHC	TCGA-DD-A39Y-01	ZNF268	ENST00000541975.2,ENST00000500625.3	chr12	133758531:133758616:133764450:133764658:133768074:133768201,	133764451	133764658	133764559	133764559	Frame_Shift_Del	C	-	p.L45fs
LIHC	TCGA-DD-A39Y-01	PSPC1	ENST00000492741.1,ENST00000338910.4,ENST00000471658.1	chr13	20304378:20304484:20315704:20315789:20325410:20325607,	20315705	20315789	20315725	20315725	Frame_Shift_Del	T	-	p.K344fs
LIHC	TCGA-DD-A39Y-01	ZMYM5	ENST00000535942.1	chr13	20409616:20409829:20411795:20411961:20412839:20413125,20409616:20409829:20411795:20411961:20425494:20425588,	20411796	20411961	20411844	20411844	Frame_Shift_Del	T	-	p.K330fs
LIHC	TCGA-DD-A39Y-01	ZMYM2	ENST00000382869.3	chr13	20534097:20534166:20567202:20568059:20576989:20577275,	20567203	20568059	20567315	20567315	Frame_Shift_Del	T	-	p.F35fs
LIHC	TCGA-DD-A39Y-01	ZMYM2	ENST00000382869.3	chr13	20534097:20534166:20567202:20568059:20576989:20577275,	20567203	20568059	20567689	20567689	Frame_Shift_Del	T	-	p.S159fs
LIHC	TCGA-DD-A39Y-01	ZMYM2	ENST00000382871.2,ENST00000382881.3,ENST00000382874.2,ENST00000382869.3	chr13	20567965:20568059:20576989:20577275:20579213:20579379,	20576990	20577275	20577145	20577145	Frame_Shift_Del	A	-	p.K336fs
LIHC	TCGA-DD-A39Y-01	CRYL1	ENST00000382812.1,ENST00000298248.7	chr13	20978773:20978880:20987420:20987526:21006240:21006435,	20987421	20987526	20987448	20987448	Frame_Shift_Del	G	-	p.L216fs
LIHC	TCGA-DD-A39Y-01	CRYL1	ENST00000382812.1,ENST00000298248.7	chr13	20987420:20987526:21006240:21006435:21013731:21013893,	21006241	21006435	21006377	21006377	Frame_Shift_Del	G	-	p.P144fs
LIHC	TCGA-DD-A39Y-01	IFT88	ENST00000351808.5,ENST00000537103.1	chr13	21142023:21142136:21148518:21148614:21157095:21157155,21141304:21141395:21148518:21148614:21157095:21157155,	21148519	21148614	21148523	21148523	Frame_Shift_Del	A	-	p.Q9fs
LIHC	TCGA-DD-A39Y-01	PARP4	ENST00000381989.3	chr13	25015983:25016106:25016727:25016823:25017787:25017868,	25016728	25016823	25016803	25016803	Frame_Shift_Del	T	-	p.K1156fs
LIHC	TCGA-DD-A39Y-01	PARP4	ENST00000381989.3	chr13	25072253:25072367:25073438:25073514:25074453:25074520,	25073439	25073514	25073469	25073469	Frame_Shift_Del	A	-	p.F149fs
LIHC	TCGA-DD-A39Y-01	MTIF3	ENST00000461838.1,ENST00000381116.1,ENST00000405591.2,ENST00000431572.2,ENST00000381120.3	chr13	28009820:28010030:28011252:28011410:28014125:28014586,	28011253	28011410	28011313	28011313	Frame_Shift_Del	T	-	p.K186fs
LIHC	TCGA-DD-A39Y-01	PAN3	ENST00000282391.5	chr13	28813769:28813833:28830428:28830676:28834583:28834688,	28830429	28830676	28830465	28830465	Frame_Shift_Del	C	-	p.S146fs
LIHC	TCGA-DD-A39Y-01	TEX26	ENST00000380473.3	chr13	31513833:31513915:31526796:31526962:31531009:31531166,	31526797	31526962	31526912	31526912	Frame_Shift_Del	A	-	p.K88fs
LIHC	TCGA-DD-A39Y-01	FRY	ENST00000380250.3	chr13	32698931:32699012:32705808:32705977:32709040:32709133,	32705809	32705977	32705950	32705950	Frame_Shift_Del	T	-	p.D286fs
LIHC	TCGA-DD-A39Y-01	FRY	ENST00000380250.3	chr13	32721418:32721522:32721975:32722084:32723884:32723971,	32721976	32722084	32722006	32722006	Frame_Shift_Del	C	-	p.F438fs
LIHC	TCGA-DD-A39Y-01	FRY	ENST00000380250.3	chr13	32761682:32761793:32768279:32768434:32776077:32776177,	32768280	32768434	32768339	32768339	Frame_Shift_Del	A	-	p.I1217fs
LIHC	TCGA-DD-A39Y-01	FRY	ENST00000380250.3	chr13	32761682:32761793:32768279:32768434:32776077:32776177,	32768280	32768434	32768344	32768344	Frame_Shift_Del	T	-	p.L1219fs
LIHC	TCGA-DD-A39Y-01	FRY	ENST00000477712.1,ENST00000380250.3,ENST00000542859.1	chr13	32841379:32841496:32848978:32849128:32850600:32850699,	32848979	32849128	32849043	32849043	Frame_Shift_Del	G	-	p.R2734fs
LIHC	TCGA-DD-A39Y-01	POSTN	ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4,ENST00000541179.1	chr13	38160918:38161065:38161958:38162123:38164508:38164666,	38161959	38162123	38161981	38161981	Frame_Shift_Del	A	-	p.F195fs
LIHC	TCGA-DD-A39Y-01	POSTN	ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4,ENST00000541179.1	chr13	38160918:38161065:38161958:38162123:38164508:38164666,	38161959	38162123	38162077	38162077	Frame_Shift_Del	T	-	p.N163fs
LIHC	TCGA-DD-A39Y-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39586858	39586858	Frame_Shift_Del	T	-	p.N844fs
LIHC	TCGA-DD-A39Y-01	COG6	ENST00000455146.3,ENST00000356576.4,ENST00000416691.1	chr13	40251604:40251716:40253674:40253757:40254111:40254182,	40253675	40253757	40253677	40253677	Frame_Shift_Del	T	-	p.D181fs
LIHC	TCGA-DD-A39Y-01	MTRF1	ENST00000430347.2,ENST00000379480.4,ENST00000379477.1	chr13	41797391:41797490:41800567:41800704:41808025:41808143,	41800568	41800704	41800658	41800658	Frame_Shift_Del	T	-	p.K345fs
LIHC	TCGA-DD-A39Y-01	NAA16	ENST00000476980.1	chr13	41902859:41902979:41905409:41905505:41910785:41910823,41902859:41902979:41905409:41905505:41929279:41929352,	41905410	41905505	41905459	41905459	Frame_Shift_Del	C	-	p.H287fs
LIHC	TCGA-DD-A39Y-01	VWA8	ENST00000379310.3	chr13	42266997:42267108:42273206:42273406:42275527:42275666,	42273207	42273406	42273247	42273247	Frame_Shift_Del	C	-	p.G1175fs
LIHC	TCGA-DD-A39Y-01	FAM124A	ENST00000322475.8	chr13	51805483:51805515:51825603:51826337:51854585:51855616,	51825604	51826337	51826193	51826193	Frame_Shift_Del	C	-	p.C230fs
LIHC	TCGA-DD-A39Y-01	INTS6	ENST00000490542.1,ENST00000469430.1,ENST00000311234.4,ENST00000483746.1,ENST00000497989.1,ENST00000483441.1,ENST00000398119.2,ENST00000493153.1	chr13	51953677:51953708:51956164:51956259:51957464:51957597,	51956165	51956259	51956200	51956200	Frame_Shift_Del	T	-	p.S414fs
LIHC	TCGA-DD-A39Y-01	INTS6	ENST00000490542.1,ENST00000469430.1,ENST00000311234.4,ENST00000483746.1,ENST00000497989.1,ENST00000483441.1,ENST00000398119.2,ENST00000493153.1	chr13	51953677:51953708:51956164:51956259:51957464:51957597,	51956165	51956259	51956204	51956204	Frame_Shift_Del	A	-	p.F412fs
LIHC	TCGA-DD-A39Y-01	INTS6	ENST00000420668.2	chr13	51961555:51961676:51963454:51963580:51969435:51969619,51961555:51961676:51963454:51963580:52004429:52004519,	51963455	51963580	51963483	51963483	Frame_Shift_Del	T	-	p.K237fs
LIHC	TCGA-DD-A39Y-01	NEK5	ENST00000355568.4	chr13	52657395:52657488:52660412:52660499:52661473:52661590,	52660413	52660499	52660460	52660460	Frame_Shift_Del	G	-	p.H478fs
LIHC	TCGA-DD-A39Y-01	SUGT1	ENST00000483074.1,ENST00000310528.8,ENST00000535397.1	chr13	53233313:53233384:53236783:53236837:53237230:53237247,	53236784	53236837	53236813	53236813	Frame_Shift_Del	A	-	p.K64fs
LIHC	TCGA-DD-A39Y-01	DIAPH3	ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4	chr13	60616823:60616954:60667761:60667866:60686143:60686320,	60667762	60667866	60667801	60667801	Frame_Shift_Del	T	-	p.K152fs
LIHC	TCGA-DD-A39Y-01	TDRD3	ENST00000377881.2,ENST00000377882.3,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61018820:61018882:61034513:61034674:61041371:61041513,	61034514	61034674	61034542	61034542	Frame_Shift_Del	A	-	p.Q74fs
LIHC	TCGA-DD-A39Y-01	TDRD3	ENST00000377881.2,ENST00000377882.3,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61041371:61041513:61057908:61057980:61059932:61060033,	61057909	61057980	61057962	61057962	Frame_Shift_Del	T	-	p.P90fs
LIHC	TCGA-DD-A39Y-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103053	61103053	Frame_Shift_Del	A	-	p.E472fs
LIHC	TCGA-DD-A39Y-01	DIS3	ENST00000377780.4	chr13	73354983:73355141:73355426:73355494:73355742:73355992,73352324:73352518:73355426:73355494:73355742:73355992,	73355427	73355494	73355436	73355436	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-DD-A39Y-01	PIBF1	ENST00000326291.6	chr13	73482668:73482819:73491213:73491304:73505302:73505405,	73491214	73491304	73491244	73491244	Frame_Shift_Del	T	-	p.L557fs
LIHC	TCGA-DD-A39Y-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2	chr13	75876378:75876537:75880448:75880607:75884077:75884287,	75880449	75880607	75880524	75880524	Frame_Shift_Del	A	-	p.W893fs
LIHC	TCGA-DD-A39Y-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000447038.1	chr13	76393528:76393671:76395312:76395745:76397700:76398009,	76395313	76395745	76395695	76395695	Frame_Shift_Del	C	-	p.P916fs
LIHC	TCGA-DD-A39Y-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000525107.2,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000525914.1,ENST00000447038.1	chr13	76408434:76408523:76409368:76409475:76410532:76410593,	76409369	76409475	76409382	76409382	Frame_Shift_Del	A	-	p.T1132fs
LIHC	TCGA-DD-A39Y-01	LMO7	ENST00000524651.1,ENST00000526202.1,ENST00000485987.1	chr13	76408434:76408523:76409287:76409475:76410532:76410593,	76409288	76409475	76409382	76409382	Frame_Shift_Del	A	-	p.T1132fs
LIHC	TCGA-DD-A39Y-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2,ENST00000360084.5	chr13	77699470:77699603:77700452:77700677:77713330:77713471,	77700453	77700677	77700649	77700649	Frame_Shift_Del	A	-	p.F2563fs
LIHC	TCGA-DD-A39Y-01	SCEL	ENST00000471491.1,ENST00000377246.3	chr13	78163278:78163359:78165529:78165595:78167648:78167708,78163278:78163359:78165529:78165595:78171679:78171724,	78165530	78165595	78165546	78165546	Frame_Shift_Del	A	-	p.K193fs
LIHC	TCGA-DD-A39Y-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000377246.3	chr13	78188030:78188090:78191733:78191793:78191937:78191997,	78191734	78191793	78191775	78191775	Frame_Shift_Del	T	-	p.I456fs
LIHC	TCGA-DD-A39Y-01	SLAIN1	ENST00000358679.3,ENST00000351546.3,ENST00000474663.1,ENST00000488699.1,ENST00000466548.1,ENST00000441784.1,ENST00000442759.1,ENST00000418532.1,ENST00000267219.8	chr13	78318417:78318567:78320648:78320990:78327337:78327376,	78320649	78320990	78320952	78320952	Frame_Shift_Del	C	-	p.A385fs
LIHC	TCGA-DD-A39Y-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121101	95121101	Frame_Shift_Del	C	-	p.G165fs
LIHC	TCGA-DD-A39Y-01	TGDS	ENST00000261296.5	chr13	95226307:95227106:95228567:95228665:95229624:95229683,	95228568	95228665	95228642	95228642	Frame_Shift_Del	G	-	p.P303fs
LIHC	TCGA-DD-A39Y-01	ABCC4	ENST00000376887.4,ENST00000471041.1,ENST00000412704.1	chr13	95695935:95696041:95696519:95696692:95705348:95705438,	95696520	95696692	95696565	95696565	Frame_Shift_Del	T	-	p.N1195fs
LIHC	TCGA-DD-A39Y-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95696519:95696692:95705348:95705438:95714957:95715113,	95705349	95705438	95705428	95705428	Frame_Shift_Del	A	-	p.L1126fs
LIHC	TCGA-DD-A39Y-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95705348:95705438:95714957:95715113:95723915:95724107,	95714958	95715113	95715080	95715080	Frame_Shift_Del	T	-	p.S1083fs
LIHC	TCGA-DD-A39Y-01	ABCC4	ENST00000376887.4,ENST00000431522.1,ENST00000536256.1	chr13	95815863:95815901:95816631:95816772:95818411:95818621,	95816632	95816772	95816660	95816660	Frame_Shift_Del	A	-	p.F716fs
LIHC	TCGA-DD-A39Y-01	DNAJC3	ENST00000602402.1	chr13	96375495:96375620:96377431:96377506:96409897:96410050,	96377432	96377506	96377498	96377498	Frame_Shift_Del	A	-	p.K130fs
LIHC	TCGA-DD-A39Y-01	DNAJC3	ENST00000602402.1	chr13	96377431:96377506:96409897:96410050:96412293:96412475,	96409898	96410050	96409996	96409996	Frame_Shift_Del	T	-	p.A164fs
LIHC	TCGA-DD-A39Y-01	UGGT2	ENST00000376747.3	chr13	96511844:96511929:96513041:96513137:96515882:96515968,	96513042	96513137	96513079	96513079	Frame_Shift_Del	A	-	p.S1235fs
LIHC	TCGA-DD-A39Y-01	UGGT2	ENST00000491509.1,ENST00000376747.3	chr13	96519592:96519677:96529532:96529618:96529951:96530110,	96529533	96529618	96529559	96529559	Frame_Shift_Del	T	-	p.K1149fs
LIHC	TCGA-DD-A39Y-01	FARP1	ENST00000319562.6	chr13	99083334:99083534:99087829:99087960:99091057:99091126,	99087830	99087960	99087888	99087888	Frame_Shift_Del	G	-	p.M734fs
LIHC	TCGA-DD-A39Y-01	FARP1	ENST00000319562.6	chr13	99087829:99087960:99091057:99091126:99091360:99091450,	99091058	99091126	99091093	99091093	Frame_Shift_Del	G	-	p.S801fs
LIHC	TCGA-DD-A39Y-01	STK24	ENST00000397517.2,ENST00000444574.1,ENST00000539966.1,ENST00000376547.3	chr13	99118629:99118815:99127074:99127232:99127503:99127612,	99127075	99127232	99127124	99127124	Frame_Shift_Del	G	-	p.P183fs
LIHC	TCGA-DD-A39Y-01	SLC15A1	ENST00000376503.5	chr13	99336054:99337169:99338443:99338551:99339834:99339978,	99338444	99338551	99338447	99338447	Frame_Shift_Del	T	-	p.K644fs
LIHC	TCGA-DD-A39Y-01	SLC15A1	ENST00000376503.5	chr13	99364751:99364838:99368131:99368214:99371490:99371574,	99368132	99368214	99368203	99368203	Frame_Shift_Del	G	-	p.L218fs
LIHC	TCGA-DD-A39Y-01	DOCK9	ENST00000419908.1,ENST00000339416.2,ENST00000400228.2,ENST00000376460.1	chr13	99452541:99452732:99457252:99457463:99459914:99460061,	99457253	99457463	99457272	99457272	Frame_Shift_Del	T	-	p.K1916fs
LIHC	TCGA-DD-A39Y-01	DOCK9	ENST00000449796.1,ENST00000448493.2,ENST00000339416.2,ENST00000340449.3,ENST00000376460.1	chr13	99483649:99483784:99483902:99484040:99489747:99489863,	99483903	99484040	99483990	99483990	Frame_Shift_Del	A	-	p.F1432fs
LIHC	TCGA-DD-A39Y-01	DOCK9	ENST00000442173.1,ENST00000448493.2,ENST00000339416.2,ENST00000376460.1	chr13	99540885:99540965:99549741:99549864:99550432:99550515,	99549742	99549864	99549826	99549826	Frame_Shift_Del	T	-	p.N542fs
LIHC	TCGA-DD-A39Y-01	UBAC2	ENST00000355700.5,ENST00000480738.1,ENST00000460562.1,ENST00000403766.3,ENST00000376440.2,ENST00000473194.1,ENST00000494576.1	chr13	99992688:99992819:100020040:100020160:100037481:100037569,	100020041	100020160	100020066	100020066	Frame_Shift_Del	T	-	p.L243fs
LIHC	TCGA-DD-A39Y-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181762	100181762	Frame_Shift_Del	A	-	p.T125fs
LIHC	TCGA-DD-A39Y-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181814	100181814	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-DD-A39Y-01	TM9SF2	ENST00000376387.4	chr13	100189992:100190117:100191699:100191811:100192967:100193047,	100191700	100191811	100191778	100191778	Frame_Shift_Del	A	-	p.I265fs
LIHC	TCGA-DD-A39Y-01	NALCN	ENST00000470333.1,ENST00000376200.5,ENST00000376196.3,ENST00000497170.1,ENST00000251127.6	chr13	102029267:102029407:102030920:102031004:102047533:102047716,	102030921	102031004	102030966	102030966	Frame_Shift_Del	A	-	p.F110fs
LIHC	TCGA-DD-A39Y-01	TPP2	ENST00000376065.4,ENST00000376052.3	chr13	103271071:103271196:103275226:103275390:103279361:103279516,	103275227	103275390	103275301	103275301	Frame_Shift_Del	A	-	p.E232fs
LIHC	TCGA-DD-A39Y-01	TEX30	ENST00000376032.4,ENST00000376019.1,ENST00000376021.4	chr13	103418459:103418930:103419622:103419828:103420609:103420661,	103419623	103419828	103419750	103419750	Frame_Shift_Del	C	-	p.G85fs
LIHC	TCGA-DD-A39Y-01	KDELC1	ENST00000376004.4,ENST00000460338.1	chr13	103440183:103440273:103441361:103441571:103443250:103443488,	103441362	103441571	103441392	103441392	Frame_Shift_Del	T	-	p.K421fs
LIHC	TCGA-DD-A39Y-01	COL4A1	ENST00000375820.4	chr13	110804680:110804853:110807629:110807744:110813538:110813716,	110807630	110807744	110807672	110807672	Frame_Shift_Del	G	-	p.P1571fs
LIHC	TCGA-DD-A39Y-01	ARHGEF7	ENST00000375741.2	chr13	111806251:111806338:111811373:111811436:111857635:111857720,	111811374	111811436	111811409	111811409	Frame_Shift_Del	G	-	p.L96fs
LIHC	TCGA-DD-A39Y-01	ARHGEF7	ENST00000426768.2,ENST00000375737.5,ENST00000375739.2,ENST00000375741.2,ENST00000375723.1,ENST00000466143.1,ENST00000449979.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5,ENST00000467053.1	chr13	111857635:111857720:111862218:111862349:111870025:111870147,	111862219	111862349	111862229	111862229	Frame_Shift_Del	G	-	p.L137fs
LIHC	TCGA-DD-A39Y-01	TUBGCP3	ENST00000261965.3	chr13	113140157:113140465:113143894:113144011:113153358:113153499,	113143895	113144011	113143971	113143971	Frame_Shift_Del	T	-	p.N830fs
LIHC	TCGA-DD-A39Y-01	TUBGCP3	ENST00000375669.3,ENST00000261965.3	chr13	113153358:113153499:113158345:113158477:113158939:113159028,	113158346	113158477	113158422	113158422	Frame_Shift_Del	A	-	p.L744fs
LIHC	TCGA-DD-A39Y-01	TUBGCP3	ENST00000375669.3,ENST00000464139.1	chr13	113219424:113219492:113223465:113223573:113242218:113242439,	113223466	113223573	113223492	113223492	Frame_Shift_Del	A	-	p.L53fs
LIHC	TCGA-DD-A39Y-01	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113490556:113490565:113496589:113496693:113505350:113505532,	113496590	113496693	113496633	113496633	Frame_Shift_Del	C	-	p.F583fs
LIHC	TCGA-DD-A39Y-01	ATP11A	ENST00000418678.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000471555.1,ENST00000283558.8	chr13	113512131:113512234:113512458:113512604:113513706:113513766,	113512459	113512604	113512556	113512556	Frame_Shift_Del	T	-	p.H873fs
LIHC	TCGA-DD-A39Y-01	MCF2L	ENST00000375604.2,ENST00000421756.1,ENST00000375597.4,ENST00000535094.2,ENST00000409954.2,ENST00000397030.1,ENST00000434480.2,ENST00000375601.3,ENST00000423482.2,ENST00000375608.3,ENST00000442652.2	chr13	113669076:113669160:113678957:113679072:113699584:113699636,	113678958	113679072	113678964	113678964	Frame_Shift_Del	G	-	p.R90fs
LIHC	TCGA-DD-A39Y-01	F7	ENST00000375581.3,ENST00000444337.1,ENST00000541084.1,ENST00000346342.3	chr13	113768160:113768274:113769973:113770114:113771079:113771102,	113769974	113770114	113770041	113770041	Frame_Shift_Del	G	-	p.T166fs
LIHC	TCGA-DD-A39Y-01	PCID2	ENST00000475433.1	chr13	113839798:113839874:113845185:113845289:113849384:113849439,113838659:113838801:113845185:113845289:113849384:113849439,	113845186	113845289	113845233	113845233	Frame_Shift_Del	T	-	p.K138fs
LIHC	TCGA-DD-A39Y-01	GRTP1	ENST00000375430.4,ENST00000326039.3,ENST00000375431.4	chr13	113979975:113980161:113980233:113980406:113999177:113999274,	113980234	113980406	113980341	113980341	Frame_Shift_Del	C	-	p.A210fs
LIHC	TCGA-DD-A39Y-01	ADPRHL1	ENST00000356501.4,ENST00000375418.3	chr13	114077140:114077294:114078531:114078664:114079366:114079494,	114078532	114078664	114078630	114078630	Frame_Shift_Del	C	-	p.G188fs
LIHC	TCGA-DD-A39Y-01	RASA3	ENST00000542651.1	chr13	114817526:114817630:114839194:114839312:114897909:114898027,	114839195	114839312	114839293	114839293	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-DD-A39Y-01	CDC16	ENST00000356221.3,ENST00000252458.6,ENST00000375308.1,ENST00000360383.3,ENST00000375310.1,ENST00000252457.5,ENST00000375312.3	chr13	115028353:115028489:115030624:115030715:115037658:115037952,	115030625	115030715	115030652	115030652	Frame_Shift_Del	T	-	p.F514fs
LIHC	TCGA-DD-A39Y-01	UPF3A	ENST00000375299.3	chr13	115047495:115047602:115048311:115048418:115056963:115057019,115047495:115047602:115048311:115048418:115051993:115052104,115047495:115047602:115048311:115048418:115051776:115051875,	115048312	115048418	115048374	115048374	Frame_Shift_Del	T	-	p.L126fs
LIHC	TCGA-DD-A39Y-01	UPF3A	ENST00000480362.1,ENST00000351487.5	chr13	115048353:115048418:115051993:115052104:115056963:115057019,	115051994	115052104	115052070	115052070	Frame_Shift_Del	G	-	p.L199fs
LIHC	TCGA-DD-A39Y-01	UPF3A	ENST00000475218.2,ENST00000375299.3,ENST00000351487.5	chr13	115064314:115064475:115067205:115067500:115070263:115070424,	115067206	115067500	115067419	115067419	Frame_Shift_Del	G	-	p.P407fs
LIHC	TCGA-DD-A39Y-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1857fs
LIHC	TCGA-DD-A39Y-01	METTL17	ENST00000555640.2	chr14	21460699:21460781:21461276:21462222:21462701:21462772,	21461277	21462222	21462145	21462145	Frame_Shift_Del	G	-	p.W207fs
LIHC	TCGA-DD-A39Y-01	METTL3	ENST00000544500.1,ENST00000538267.1,ENST00000537163.1,ENST00000539760.1,ENST00000298717.4	chr14	21969148:21969271:21969869:21970045:21971315:21971434,	21969870	21970045	21970017	21970017	Frame_Shift_Del	T	-	p.N251fs
LIHC	TCGA-DD-A39Y-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991262	21991262	Frame_Shift_Del	C	-	p.G867fs
LIHC	TCGA-DD-A39Y-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991973	21991973	Frame_Shift_Del	G	-	p.P630fs
LIHC	TCGA-DD-A39Y-01	RBM23	ENST00000555714.1,ENST00000553920.1	chr14	23375558:23375577:23377541:23377589:23378691:23378804,23375558:23375577:23377541:23377589:23380536:23380612,	23377542	23377589	23377548	23377548	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A39Y-01	RBM23	ENST00000556984.1	chr14	23375558:23375577:23377541:23377608:23378691:23378804,	23377542	23377608	23377548	23377548	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A39Y-01	RBM23	ENST00000555714.1,ENST00000553920.1	chr14	23375558:23375577:23377541:23377589:23378691:23378804,23375558:23375577:23377541:23377589:23380536:23380612,	23377542	23377589	23377561	23377561	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A39Y-01	RBM23	ENST00000556984.1	chr14	23375558:23375577:23377541:23377608:23378691:23378804,	23377542	23377608	23377561	23377561	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A39Y-01	PRMT5	ENST00000538452.1,ENST00000421938.2,ENST00000553915.1,ENST00000556616.1,ENST00000557415.1,ENST00000324366.8,ENST00000397441.2,ENST00000553641.1,ENST00000554910.1,ENST00000555530.1	chr14	23395945:23396023:23396734:23396869:23397334:23397352,	23396735	23396869	23396867	23396867	Frame_Shift_Del	G	-	p.A106fs
LIHC	TCGA-DD-A39Y-01	CDH24	ENST00000397359.3,ENST00000485922.1,ENST00000487137.2,ENST00000554034.1,ENST00000267383.5	chr14	23517372:23517688:23518235:23518484:23518835:23518947,	23518236	23518484	23518429	23518429	Frame_Shift_Del	G	-	p.P589fs
LIHC	TCGA-DD-A39Y-01	SLC22A17	ENST00000397267.1,ENST00000206544.8,ENST00000397260.3,ENST00000354772.3	chr14	23817099:23817205:23817369:23817515:23817714:23817755,	23817370	23817515	23817433	23817433	Frame_Shift_Del	G	-	p.L259fs
LIHC	TCGA-DD-A39Y-01	EFS	ENST00000216733.3	chr14	23829131:23829248:23829349:23829490:23829763:23830042,	23829350	23829490	23829426	23829426	Frame_Shift_Del	G	-	p.P122fs
LIHC	TCGA-DD-A39Y-01	CMTM5	ENST00000555731.1,ENST00000553750.1,ENST00000359320.3	chr14	23846460:23846586:23848239:23848332:23848507:23848592,23847671:23847710:23848239:23848332:23848507:23848592,	23848240	23848332	23848262	23848262	Frame_Shift_Del	C	-	p.A101fs
LIHC	TCGA-DD-A39Y-01	AP1G2	ENST00000465445.2,ENST00000554554.1,ENST00000397120.3,ENST00000308724.5,ENST00000557391.1,ENST00000535852.2,ENST00000460049.2	chr14	24028897:24029059:24029146:24029245:24029463:24029627,	24029147	24029245	24029193	24029193	Frame_Shift_Del	C	-	p.G738fs
LIHC	TCGA-DD-A39Y-01	PSME1	ENST00000559123.1,ENST00000206451.6,ENST00000382708.3,ENST00000561142.1,ENST00000561435.1,ENST00000470718.1	chr14	24606193:24606226:24606351:24606414:24606529:24606640,	24606352	24606414	24606406	24606406	Frame_Shift_Del	T	-	p.F43fs
LIHC	TCGA-DD-A39Y-01	EMC9	ENST00000560403.1	chr14	24608597:24608663:24608753:24608998:24610097:24610174,	24608754	24608998	24608868	24608868	Frame_Shift_Del	A	-	p.F3fs
LIHC	TCGA-DD-A39Y-01	EMC9	ENST00000560600.1	chr14	24608597:24608663:24608753:24609025:24610097:24610174,	24608754	24609025	24608868	24608868	Frame_Shift_Del	A	-	p.F3fs
LIHC	TCGA-DD-A39Y-01	EMC9	ENST00000216799.4,ENST00000560600.1	chr14	24610097:24610174:24610315:24610525:24610646:24610696,	24610316	24610525	24610449	24610449	Frame_Shift_Del	G	-	p.P22fs
LIHC	TCGA-DD-A39Y-01	RNF31	ENST00000324103.6,ENST00000382687.3,ENST00000560787.1,ENST00000559275.1	chr14	24618685:24618792:24619269:24619657:24619806:24620097,	24619270	24619657	24619475	24619475	Frame_Shift_Del	C	-	p.P339fs
LIHC	TCGA-DD-A39Y-01	RNF31	ENST00000324103.6,ENST00000382687.3,ENST00000560787.1,ENST00000559275.1	chr14	24618685:24618792:24619269:24619657:24619806:24620097,	24619270	24619657	24619604	24619604	Frame_Shift_Del	C	-	p.P382fs
LIHC	TCGA-DD-A39Y-01	RABGGTA	ENST00000560871.1	chr14	24737574:24737626:24737719:24738032:24738116:24738199,	24737720	24738032	24737725	24737725	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-DD-A39Y-01	RABGGTA	ENST00000216840.6,ENST00000559551.1,ENST00000558376.1,ENST00000560998.1,ENST00000399409.3,ENST00000559974.1,ENST00000543002.1	chr14	24737574:24737626:24737719:24737825:24737930:24738032,	24737720	24737825	24737725	24737725	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-DD-A39Y-01	NOP9	ENST00000267425.3,ENST00000396802.3,ENST00000557362.1	chr14	24771610:24771630:24772279:24772420:24772937:24773063,	24772280	24772420	24772343	24772343	Frame_Shift_Del	G	-	p.G403fs
LIHC	TCGA-DD-A39Y-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845517	24845517	Frame_Shift_Del	C	-	p.P755fs
LIHC	TCGA-DD-A39Y-01	NFATC4	ENST00000554591.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000554966.1,ENST00000554050.1,ENST00000554473.1,ENST00000553469.1	chr14	24845279:24845307:24845499:24845760:24846843:24846911,	24845500	24845760	24845517	24845517	Frame_Shift_Del	C	-	p.P755fs
LIHC	TCGA-DD-A39Y-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845595	24845595	Frame_Shift_Del	C	-	p.P781fs
LIHC	TCGA-DD-A39Y-01	NFATC4	ENST00000554591.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000554966.1,ENST00000554050.1,ENST00000554473.1,ENST00000553469.1	chr14	24845279:24845307:24845499:24845760:24846843:24846911,	24845500	24845760	24845595	24845595	Frame_Shift_Del	C	-	p.P781fs
LIHC	TCGA-DD-A39Y-01	NOVA1	ENST00000344429.5,ENST00000465357.2,ENST00000547619.1,ENST00000539517.2,ENST00000574031.1	chr14	26949182:26949349:27064615:27064759:27066506:27066642,	27064616	27064759	27064622	27064622	Frame_Shift_Del	A	-	p.Y92fs
LIHC	TCGA-DD-A39Y-01	STRN3	ENST00000357479.5	chr14	31382729:31382863:31398406:31398517:31404368:31404506,31388171:31388312:31398406:31398517:31404368:31404506,	31398407	31398517	31398413	31398413	Frame_Shift_Del	C	-	p.V365fs
LIHC	TCGA-DD-A39Y-01	HECTD1	ENST00000555843.1,ENST00000553957.1,ENST00000553700.1,ENST00000399332.1,ENST00000554882.1	chr14	31583082:31583265:31583491:31583546:31585441:31585664,	31583492	31583546	31583502	31583502	Frame_Shift_Del	T	-	p.N1888fs
LIHC	TCGA-DD-A39Y-01	HECTD1	ENST00000555843.1,ENST00000553957.1,ENST00000553700.1,ENST00000399332.1,ENST00000554882.1	chr14	31583491:31583546:31585441:31585664:31588915:31589072,	31585442	31585664	31585513	31585513	Frame_Shift_Del	T	-	p.K1849fs
LIHC	TCGA-DD-A39Y-01	HECTD1	ENST00000553700.1,ENST00000399332.1	chr14	31597071:31597212:31597817:31598654:31602443:31602620,	31597818	31598654	31598119	31598119	Frame_Shift_Del	A	-	p.V1486fs
LIHC	TCGA-DD-A39Y-01	HECTD1	ENST00000553957.1	chr14	31597071:31597212:31597817:31598513:31602443:31602620,	31597818	31598513	31598119	31598119	Frame_Shift_Del	A	-	p.V1486fs
LIHC	TCGA-DD-A39Y-01	NUBPL	ENST00000536705.1,ENST00000281081.7,ENST00000547839.1,ENST00000418681.2	chr14	32295834:32295920:32315676:32315797:32319324:32319407,	32315677	32315797	32315693	32315693	Frame_Shift_Del	A	-	p.Q237fs
LIHC	TCGA-DD-A39Y-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560530	32560530	Frame_Shift_Del	A	-	p.K220fs
LIHC	TCGA-DD-A39Y-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561107	32561107	Frame_Shift_Del	A	-	p.E411fs
LIHC	TCGA-DD-A39Y-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562545	32562545	Frame_Shift_Del	T	-	p.D890fs
LIHC	TCGA-DD-A39Y-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563077	32563077	Frame_Shift_Del	A	-	p.K1068fs
LIHC	TCGA-DD-A39Y-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563495	32563495	Frame_Shift_Del	G	-	p.W1207fs
LIHC	TCGA-DD-A39Y-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000551008.1,ENST00000341321.4,ENST00000346562.2,ENST00000547068.1,ENST00000357798.5,ENST00000548645.1	chr14	33836397:33836474:34029326:34029416:34145416:34145591,	34029327	34029416	34029369	34029369	Frame_Shift_Del	T	-	p.F139fs
LIHC	TCGA-DD-A39Y-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3	chr14	35031865:35032381:35036891:35036977:35037059:35037219,	35036892	35036977	35036932	35036932	Frame_Shift_Del	T	-	p.N260fs
LIHC	TCGA-DD-A39Y-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3,ENST00000555416.1	chr14	35044961:35045048:35050766:35050806:35055435:35055511,	35050767	35050806	35050772	35050772	Frame_Shift_Del	T	-	p.T161fs
LIHC	TCGA-DD-A39Y-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35227909:35228052:35230962:35231429:35233912:35234139,	35230963	35231429	35230975	35230975	Frame_Shift_Del	T	-	p.R1411fs
LIHC	TCGA-DD-A39Y-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35295218:35295362:35331249:35331528:35343697:35343868,	35331250	35331528	35331291	35331291	Frame_Shift_Del	A	-	p.F117fs
LIHC	TCGA-DD-A39Y-01	FAM177A1	ENST00000553955.2	chr14	35515809:35515834:35522483:35522657:35546355:35546422,35515886:35516290:35522483:35522657:35546355:35546422,	35522484	35522657	35522638	35522638	Frame_Shift_Del	T	-	p.V84fs
LIHC	TCGA-DD-A39Y-01	FAM177A1	ENST00000382406.3,ENST00000396472.1,ENST00000280987.4,ENST00000554794.1,ENST00000553955.2	chr14	35522483:35522657:35546355:35546422:35548132:35548218,	35546356	35546422	35546374	35546374	Frame_Shift_Del	C	-	p.P97fs
LIHC	TCGA-DD-A39Y-01	PPP2R3C	ENST00000261475.5,ENST00000557217.1,ENST00000554222.1	chr14	35560275:35560413:35564253:35564390:35565763:35565839,	35564254	35564390	35564368	35564368	Frame_Shift_Del	T	-	p.K287fs
LIHC	TCGA-DD-A39Y-01	PPP2R3C	ENST00000554563.1	chr14	35577344:35577442:35579730:35579835:35585815:35585943,	35579731	35579835	35579776	35579776	Frame_Shift_Del	A	-	p.F82fs
LIHC	TCGA-DD-A39Y-01	NFKBIA	ENST00000555371.1	chr14	35871131:35871266:35871599:35872065:35872355:35872444,	35871600	35872065	35871730	35871730	Frame_Shift_Del	C	-	p.G259fs
LIHC	TCGA-DD-A39Y-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000554704.1,ENST00000307138.6,ENST00000554652.1	chr14	36211573:36211771:36217790:36218030:36219687:36219735,	36217791	36218030	36217990	36217990	Frame_Shift_Del	T	-	p.N351fs
LIHC	TCGA-DD-A39Y-01	MBIP	ENST00000359527.7,ENST00000318473.7,ENST00000605579.1	chr14	36783906:36784121:36785898:36786018:36789665:36789783,	36785899	36786018	36785903	36785903	Frame_Shift_Del	A	-	p.L82fs
LIHC	TCGA-DD-A39Y-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39517855:39517933:39524346:39524500:39530968:39531075,	39524347	39524500	39524400	39524400	Frame_Shift_Del	T	-	p.T334fs
LIHC	TCGA-DD-A39Y-01	FBXO33	ENST00000298097.7	chr14	39868769:39868991:39870379:39871065:39871604:39871715,	39870380	39871065	39870775	39870775	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-DD-A39Y-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42355949	42355949	Frame_Shift_Del	G	-	p.G41fs
LIHC	TCGA-DD-A39Y-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42356672	42356672	Frame_Shift_Del	T	-	p.F282fs
LIHC	TCGA-DD-A39Y-01	PRPF39	ENST00000554081.1,ENST00000477626.1,ENST00000554439.1,ENST00000424478.1,ENST00000355765.6,ENST00000554429.1	chr14	45576653:45576819:45577617:45577725:45578818:45578983,	45577618	45577725	45577697	45577697	Frame_Shift_Del	T	-	p.V328fs
LIHC	TCGA-DD-A39Y-01	FANCM	ENST00000267430.5,ENST00000556036.1,ENST00000542564.2	chr14	45618039:45618198:45620599:45620731:45623122:45623255,	45620600	45620731	45620671	45620671	Frame_Shift_Del	A	-	p.T330fs
LIHC	TCGA-DD-A39Y-01	FANCM	ENST00000267430.5,ENST00000542564.2,ENST00000556250.1	chr14	45636152:45636366:45639791:45639949:45642257:45642413,	45639792	45639949	45639909	45639909	Frame_Shift_Del	A	-	p.Q707fs
LIHC	TCGA-DD-A39Y-01	FANCM	ENST00000267430.5,ENST00000542564.2,ENST00000556250.1	chr14	45658004:45658565:45665374:45665750:45667846:45668038,	45665375	45665750	45665511	45665511	Frame_Shift_Del	A	-	p.E1826fs
LIHC	TCGA-DD-A39Y-01	FANCM	ENST00000555484.1	chr14	45665656:45665750:45667846:45668038:45669072:45669130,	45667847	45668038	45667928	45667928	Frame_Shift_Del	T	-	p.L1933fs
LIHC	TCGA-DD-A39Y-01	FANCM	ENST00000267430.5,ENST00000554809.1,ENST00000542564.2,ENST00000556250.1	chr14	45665656:45665750:45667846:45668138:45669072:45669130,	45667847	45668138	45667928	45667928	Frame_Shift_Del	T	-	p.L1933fs
LIHC	TCGA-DD-A39Y-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693376	45693376	Frame_Shift_Del	T	-	p.K805fs
LIHC	TCGA-DD-A39Y-01	MIS18BP1	ENST00000454990.1,ENST00000310806.4	chr14	45696028:45696039:45696865:45697017:45700343:45700501,	45696866	45697017	45696945	45696945	Frame_Shift_Del	T	-	p.N556fs
LIHC	TCGA-DD-A39Y-01	LRR1	ENST00000298288.6,ENST00000540712.1	chr14	50069087:50069186:50074117:50074839:50080973:50081388,	50074118	50074839	50074691	50074691	Frame_Shift_Del	T	-	p.F286fs
LIHC	TCGA-DD-A39Y-01	POLE2	ENST00000554396.1,ENST00000539565.2,ENST00000556584.1,ENST00000216367.5	chr14	50121722:50121812:50122388:50122561:50130032:50130105,	50122389	50122561	50122448	50122448	Frame_Shift_Del	A	-	p.L264fs
LIHC	TCGA-DD-A39Y-01	POLE2	ENST00000554396.1,ENST00000216367.5	chr14	50140840:50140934:50141067:50141145:50146442:50146518,	50141068	50141145	50141076	50141076	Frame_Shift_Del	T	-	p.K105fs
LIHC	TCGA-DD-A39Y-01	NEMF	ENST00000555411.1,ENST00000555970.1,ENST00000545773.1,ENST00000556925.1,ENST00000298310.5,ENST00000546046.1	chr14	50269170:50269291:50269386:50269445:50269954:50270012,	50269387	50269445	50269439	50269439	Frame_Shift_Del	T	-	p.K641fs
LIHC	TCGA-DD-A39Y-01	CDKL1	ENST00000216378.2,ENST00000395834.1,ENST00000528197.1	chr14	50808849:50808940:50811703:50811776:50825745:50825867,	50811704	50811776	50811710	50811710	Frame_Shift_Del	T	-	p.K120fs
LIHC	TCGA-DD-A39Y-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51214709:51214823:51219235:51219451:51221280:51221350,	51219236	51219451	51219368	51219368	Frame_Shift_Del	T	-	p.K1606fs
LIHC	TCGA-DD-A39Y-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51214709:51214823:51219235:51219451:51221280:51221350,	51219236	51219451	51219378	51219378	Frame_Shift_Del	T	-	p.N1603fs
LIHC	TCGA-DD-A39Y-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223533	51223533	Frame_Shift_Del	T	-	p.K1405fs
LIHC	TCGA-DD-A39Y-01	TRIM9	ENST00000298355.3	chr14	51448571:51448821:51464767:51464906:51467400:51467546,	51464768	51464906	51464816	51464816	Frame_Shift_Del	T	-	p.T519fs
LIHC	TCGA-DD-A39Y-01	TXNDC16	ENST00000281741.4	chr14	52922158:52922180:52923807:52923892:52936754:52936891,	52923808	52923892	52923814	52923814	Frame_Shift_Del	A	-	p.L568fs
LIHC	TCGA-DD-A39Y-01	TXNDC16	ENST00000281741.4	chr14	52957556:52957723:52977957:52978108:52981597:52981688,	52977958	52978108	52978072	52978072	Frame_Shift_Del	A	-	p.F214fs
LIHC	TCGA-DD-A39Y-01	PSMC6	ENST00000445930.2,ENST00000606149.1	chr14	53184798:53184860:53184946:53185070:53190682:53190754,53184798:53184860:53184946:53185070:53185694:53185756,	53184947	53185070	53185044	53185044	Frame_Shift_Del	T	-	p.I244fs
LIHC	TCGA-DD-A39Y-01	STYX	ENST00000442123.2,ENST00000354586.4	chr14	53211569:53211602:53213143:53213197:53217400:53217498,	53213144	53213197	53213189	53213189	Frame_Shift_Del	A	-	p.K46fs
LIHC	TCGA-DD-A39Y-01	DDHD1	ENST00000323669.5,ENST00000395606.1,ENST00000555400.1,ENST00000556027.1,ENST00000357758.3	chr14	53521155:53521347:53522377:53522630:53525194:53525344,	53522378	53522630	53522542	53522542	Frame_Shift_Del	G	-	p.P694fs
LIHC	TCGA-DD-A39Y-01	CGRRF1	ENST00000216420.7,ENST00000556216.1	chr14	54976629:54976781:54989171:54989311:54996766:54996944,	54989172	54989311	54989202	54989202	Frame_Shift_Del	A	-	p.R45fs
LIHC	TCGA-DD-A39Y-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529521	55529521	Frame_Shift_Del	A	-	p.P68fs
LIHC	TCGA-DD-A39Y-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529714	55529714	Frame_Shift_Del	C	-	p.P133fs
LIHC	TCGA-DD-A39Y-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56079016	56079016	Frame_Shift_Del	T	-	p.F84fs
LIHC	TCGA-DD-A39Y-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56079022	56079022	Frame_Shift_Del	T	-	p.L86fs
LIHC	TCGA-DD-A39Y-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000553360.1,ENST00000395314.3,ENST00000459737.1,ENST00000554570.1,ENST00000554306.1,ENST00000395308.1,ENST00000395311.1	chr14	56125263:56125332:56126383:56126421:56128239:56128304,	56126384	56126421	56126396	56126396	Frame_Shift_Del	C	-	p.P993fs
LIHC	TCGA-DD-A39Y-01	EXOC5	ENST00000554011.1,ENST00000555148.1,ENST00000340918.7,ENST00000413566.2	chr14	57676670:57676779:57684699:57684786:57686039:57686160,	57684700	57684786	57684747	57684747	Frame_Shift_Del	T	-	p.K522fs
LIHC	TCGA-DD-A39Y-01	EXOC5	ENST00000555148.1,ENST00000413566.2,ENST00000554598.1	chr14	57706312:57706377:57710882:57711077:57713428:57713545,	57710883	57711077	57710898	57710898	Frame_Shift_Del	A	-	p.F150fs
LIHC	TCGA-DD-A39Y-01	SLC35F4	ENST00000339762.6,ENST00000554729.1,ENST00000556826.1	chr14	58038611:58038737:58047931:58048151:58055933:58056228,	58047932	58048151	58047986	58047986	Frame_Shift_Del	G	-	p.A251fs
LIHC	TCGA-DD-A39Y-01	ACTR10	ENST00000555337.1	chr14	58681922:58682002:58686411:58686447:58690339:58690419,58681922:58682002:58686411:58686447:58697116:58697198,	58686412	58686447	58686444	58686444	Frame_Shift_Del	A	-	p.K211fs
LIHC	TCGA-DD-A39Y-01	ARID4A	ENST00000355431.3	chr14	58832741:58832948:58833600:58833747:58838603:58838678,	58833601	58833747	58833728	58833728	Frame_Shift_Del	A	-	p.L1217fs
LIHC	TCGA-DD-A39Y-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58956922:58956958:58965500:58965678:58975272:58975427,58958861:58958993:58965500:58965678:58975272:58975427,	58965501	58965678	58965626	58965626	Frame_Shift_Del	G	-	p.L1328fs
LIHC	TCGA-DD-A39Y-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60193811	60193811	Frame_Shift_Del	G	-	p.Q531fs
LIHC	TCGA-DD-A39Y-01	MNAT1	ENST00000261245.4,ENST00000556525.1,ENST00000539616.2	chr14	61264804:61264878:61275042:61275146:61278704:61278845,	61275043	61275146	61275065	61275065	Frame_Shift_Del	G	-	p.V113fs
LIHC	TCGA-DD-A39Y-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442739	61442739	Frame_Shift_Del	C	-	p.D300fs
LIHC	TCGA-DD-A39Y-01	TRMT5	ENST00000261249.6	chr14	61442192:61442844:61444231:61444356:61445948:61446604,	61444232	61444356	61444270	61444270	Frame_Shift_Del	T	-	p.M252fs
LIHC	TCGA-DD-A39Y-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62194170:62194373:62199135:62199242:62200855:62201003,	62199136	62199242	62199205	62199205	Frame_Shift_Del	T	-	p.A282fs
LIHC	TCGA-DD-A39Y-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62207260:62207345:62207472:62207906:62211422:62211531,	62207473	62207906	62207855	62207855	Frame_Shift_Del	A	-	p.E682fs
LIHC	TCGA-DD-A39Y-01	HIF1A	ENST00000323441.6	chr14	62207472:62207906:62211422:62211531:62212408:62212535,62207472:62207906:62211422:62211531:62213651:62214190,	62211423	62211531	62211512	62211512	Frame_Shift_Del	T	-	p.L729fs
LIHC	TCGA-DD-A39Y-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000394997.1,ENST00000557538.1	chr14	62211430:62211531:62212408:62212535:62213651:62214190,	62212409	62212535	62212471	62212471	Frame_Shift_Del	A	-	p.V756fs
LIHC	TCGA-DD-A39Y-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63851248:63851289:63856329:63856449:63858534:63858585,	63856330	63856449	63856333	63856333	Frame_Shift_Del	A	-	p.F357fs
LIHC	TCGA-DD-A39Y-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63851248:63851289:63856329:63856449:63858534:63858585,	63856330	63856449	63856338	63856338	Frame_Shift_Del	G	-	p.H356fs
LIHC	TCGA-DD-A39Y-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000554584.1,ENST00000557005.1	chr14	64469741:64470048:64473760:64473940:64476683:64476834,	64473761	64473940	64473892	64473892	Frame_Shift_Del	A	-	p.Q1510fs
LIHC	TCGA-DD-A39Y-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000553308.1,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64568703:64568760:64574208:64574325:64580058:64580289,	64574209	64574325	64574306	64574306	Frame_Shift_Del	G	-	p.R582fs
LIHC	TCGA-DD-A39Y-01	SYNE2	ENST00000357395.3,ENST00000555612.1,ENST00000358025.3,ENST00000553289.1,ENST00000394768.2,ENST00000344113.4,ENST00000555002.1	chr14	64630172:64630299:64632002:64632128:64633950:64634105,	64632003	64632128	64632109	64632109	Frame_Shift_Del	A	-	p.E1914fs
LIHC	TCGA-DD-A39Y-01	SYNE2	ENST00000357395.3,ENST00000555612.1,ENST00000358025.3,ENST00000553289.1,ENST00000394768.2,ENST00000344113.4,ENST00000555002.1	chr14	64644075:64644201:64653141:64653297:64655267:64655426,	64653142	64653297	64653254	64653254	Frame_Shift_Del	A	-	p.Q2275fs
LIHC	TCGA-DD-A39Y-01	SYNE2	ENST00000357395.3,ENST00000557084.1,ENST00000555612.1,ENST00000555022.1,ENST00000553289.1,ENST00000554805.1,ENST00000394768.2,ENST00000344113.4	chr14	64680911:64681188:64682965:64683105:64685115:64685230,	64682966	64683105	64683070	64683070	Frame_Shift_Del	C	-	p.P2866fs
LIHC	TCGA-DD-A39Y-01	ESR2	ENST00000344288.6	chr14	64701780:64701868:64716263:64716397:64723943:64724082,64701780:64701868:64716263:64716397:64727166:64727245,	64716264	64716397	64716388	64716388	Frame_Shift_Del	C	-	p.G367fs
LIHC	TCGA-DD-A39Y-01	ESR2	ENST00000353772.3,ENST00000554572.1,ENST00000358599.5,ENST00000555278.1,ENST00000357782.2,ENST00000542956.1,ENST00000341099.4,ENST00000556275.1,ENST00000557772.1,ENST00000553796.1	chr14	64701780:64701868:64723943:64724082:64727166:64727245,64716263:64716397:64723943:64724082:64727166:64727245,	64723944	64724082	64724009	64724009	Frame_Shift_Del	C	-	p.G342fs
LIHC	TCGA-DD-A39Y-01	ESR2	ENST00000555483.1	chr14	64716263:64716397:64723943:64724133:64727166:64727466,	64723944	64724133	64724009	64724009	Frame_Shift_Del	C	-	p.G342fs
LIHC	TCGA-DD-A39Y-01	MTHFD1	ENST00000545908.1,ENST00000555252.1,ENST00000216605.8	chr14	64882356:64882457:64884605:64884742:64886531:64886643,	64884606	64884742	64884663	64884663	Frame_Shift_Del	C	-	p.A179fs
LIHC	TCGA-DD-A39Y-01	PPP1R36	ENST00000557202.1,ENST00000298705.1,ENST00000467261.1	chr14	65031468:65031555:65032074:65032172:65032343:65032410,	65032075	65032172	65032118	65032118	Frame_Shift_Del	A	-	p.K105fs
LIHC	TCGA-DD-A39Y-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000557654.1,ENST00000553936.1	chr14	67243181:67243239:67291191:67291284:67309395:67309434,67243181:67243239:67291191:67291284:67346656:67346750,	67291192	67291284	67291217	67291217	Frame_Shift_Del	A	-	p.E76fs
LIHC	TCGA-DD-A39Y-01	PLEK2	ENST00000216446.4,ENST00000553387.1	chr14	67854968:67855019:67859042:67859144:67859378:67859422,67857439:67857463:67859042:67859144:67859378:67859422,	67859043	67859144	67859064	67859064	Frame_Shift_Del	T	-	p.K250fs
LIHC	TCGA-DD-A39Y-01	ACTN1	ENST00000394419.4	chr14	69343798:69343957:69345174:69345240:69346678:69346825,69343798:69343957:69345174:69345240:69345705:69345786,	69345175	69345240	69345209	69345209	Frame_Shift_Del	A	-	p.F798fs
LIHC	TCGA-DD-A39Y-01	ACTN1	ENST00000193403.6,ENST00000556083.1	chr14	69345174:69345240:69345705:69345786:69346678:69346825,69343798:69343957:69345705:69345786:69346678:69346825,	69345706	69345786	69345708	69345708	Frame_Shift_Del	G	-	p.Q787fs
LIHC	TCGA-DD-A39Y-01	EXD2	ENST00000409018.3,ENST00000449989.1,ENST00000312994.5,ENST00000409675.1,ENST00000409014.1,ENST00000409949.1,ENST00000409242.1	chr14	69697188:69697315:69701416:69701748:69702762:69702869,	69701417	69701748	69701478	69701478	Frame_Shift_Del	A	-	p.Y135fs
LIHC	TCGA-DD-A39Y-01	GALNT16	ENST00000337827.4	chr14	69814593:69814719:69818747:69818887:69820048:69821183,	69818748	69818887	69818807	69818807	Frame_Shift_Del	A	-	p.T533fs
LIHC	TCGA-DD-A39Y-01	SLC39A9	ENST00000336643.5,ENST00000555245.1,ENST00000538956.1,ENST00000556605.1,ENST00000555840.1	chr14	69890810:69890919:69919957:69920026:69921528:69921614,69908785:69908983:69919957:69920026:69921528:69921614,	69919958	69920026	69919987	69919987	Frame_Shift_Del	A	-	p.K79fs
LIHC	TCGA-DD-A39Y-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054746	72054746	Frame_Shift_Del	C	-	p.P53fs
LIHC	TCGA-DD-A39Y-01	PSEN1	ENST00000553855.1,ENST00000394164.1,ENST00000261970.3,ENST00000324501.5,ENST00000406768.1,ENST00000557511.1,ENST00000555386.1,ENST00000357710.4,ENST00000344094.3	chr14	73640273:73640415:73653560:73653628:73659351:73659572,	73653561	73653628	73653606	73653606	Frame_Shift_Del	T	-	p.F177fs
LIHC	TCGA-DD-A39Y-01	HEATR4	ENST00000560393.1,ENST00000334988.2,ENST00000553558.1	chr14	73985726:73985867:73987555:73987743:73988975:73989928,	73987556	73987743	73987741	73987741	Frame_Shift_Del	A	-	p.L295fs
LIHC	TCGA-DD-A39Y-01	DNAL1	ENST00000554871.1,ENST00000553645.2,ENST00000540526.1,ENST00000554339.1,ENST00000311089.3	chr14	74153961:74154088:74156077:74156218:74162604:74162645,	74156078	74156218	74156125	74156125	Frame_Shift_Del	T	-	p.F34fs
LIHC	TCGA-DD-A39Y-01	ZNF410	ENST00000334521.4,ENST00000555730.1,ENST00000324593.6,ENST00000412490.3,ENST00000541357.2,ENST00000398139.3,ENST00000557363.1,ENST00000555044.1,ENST00000556797.1	chr14	74360499:74360635:74363018:74363237:74364773:74364965,	74363019	74363237	74363070	74363070	Frame_Shift_Del	T	-	p.V74fs
LIHC	TCGA-DD-A39Y-01	ZNF410	ENST00000554582.1,ENST00000556396.1,ENST00000555602.2	chr14	74360499:74360635:74363050:74363237:74364773:74364965,	74363051	74363237	74363070	74363070	Frame_Shift_Del	T	-	p.V74fs
LIHC	TCGA-DD-A39Y-01	ZNF410	ENST00000334521.4,ENST00000555730.1,ENST00000324593.6,ENST00000412490.3,ENST00000541357.2,ENST00000398139.3,ENST00000557363.1,ENST00000555044.1,ENST00000556797.1	chr14	74360499:74360635:74363018:74363237:74364773:74364965,	74363019	74363237	74363139	74363139	Frame_Shift_Del	C	-	p.S97fs
LIHC	TCGA-DD-A39Y-01	ZNF410	ENST00000554582.1,ENST00000556396.1,ENST00000555602.2	chr14	74360499:74360635:74363050:74363237:74364773:74364965,	74363051	74363237	74363139	74363139	Frame_Shift_Del	C	-	p.S97fs
LIHC	TCGA-DD-A39Y-01	ALDH6A1	ENST00000554501.1	chr14	74535562:74535684:74537897:74538363:74538598:74538677,	74537898	74538363	74538133	74538133	Frame_Shift_Del	T	-	p.K165fs
LIHC	TCGA-DD-A39Y-01	ALDH6A1	ENST00000350259.4,ENST00000553458.1	chr14	74535562:74535684:74537897:74538200:74538598:74538677,	74537898	74538200	74538133	74538133	Frame_Shift_Del	T	-	p.K165fs
LIHC	TCGA-DD-A39Y-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74971685:74971877:74972750:74972894:74973400:74973526,	74972751	74972894	74972757	74972757	Frame_Shift_Del	C	-	p.A1391fs
LIHC	TCGA-DD-A39Y-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74976793:74976916:74977947:74978067:74983524:74983644,	74977948	74978067	74978010	74978010	Frame_Shift_Del	G	-	p.P989fs
LIHC	TCGA-DD-A39Y-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74995185:74995401:74995660:74995825:74999128:74999251,	74995661	74995825	74995680	74995680	Frame_Shift_Del	T	-	p.K711fs
LIHC	TCGA-DD-A39Y-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1,ENST00000557425.1	chr14	75002634:75002703:75016565:75016668:75017766:75018053,	75016566	75016668	75016599	75016599	Frame_Shift_Del	C	-	p.V586fs
LIHC	TCGA-DD-A39Y-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	75022205:75022396:75052556:75052821:75070337:75070408,	75052557	75052821	75052580	75052580	Frame_Shift_Del	G	-	p.P269fs
LIHC	TCGA-DD-A39Y-01	AREL1	ENST00000469797.1,ENST00000356357.4,ENST00000555330.1,ENST00000557401.1	chr14	75143285:75143455:75149998:75150236:75151156:75151383,	75149999	75150236	75150037	75150037	Frame_Shift_Del	T	-	p.N148fs
LIHC	TCGA-DD-A39Y-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264298	75264298	Frame_Shift_Del	A	-	p.R767fs
LIHC	TCGA-DD-A39Y-01	YLPM1	ENST00000238571.3,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7	chr14	75269258:75269379:75276082:75276500:75276612:75276705,	75276083	75276500	75276295	75276295	Frame_Shift_Del	T	-	p.S1578fs
LIHC	TCGA-DD-A39Y-01	DLST	ENST00000334212.6,ENST00000238671.7,ENST00000334220.4,ENST00000554612.1	chr14	75366991:75367075:75367768:75367936:75368898:75369155,	75367769	75367936	75367774	75367774	Frame_Shift_Del	A	-	p.R355fs
LIHC	TCGA-DD-A39Y-01	PGF	ENST00000555567.1,ENST00000238607.6	chr14	75409412:75409436:75412915:75412978:75413081:75413111,	75412916	75412978	75412957	75412957	Frame_Shift_Del	C	-	p.G148fs
LIHC	TCGA-DD-A39Y-01	MLH3	ENST00000553713.1,ENST00000556740.1,ENST00000355774.2,ENST00000544985.1,ENST00000556453.1,ENST00000238662.7,ENST00000555144.1	chr14	75489697:75489721:75497245:75497405:75498770:75498882,	75497246	75497405	75497376	75497376	Frame_Shift_Del	C	-	p.G1286fs
LIHC	TCGA-DD-A39Y-01	TMED10	ENST00000555873.1,ENST00000555085.1	chr14	75614366:75614440:75618734:75618846:75643057:75643300,	75618735	75618846	75618781	75618781	Frame_Shift_Del	A	-	p.F97fs
LIHC	TCGA-DD-A39Y-01	FOS	ENST00000554212.1	chr14	75745530:75745826:75746608:75746831:75747262:75747310,	75746609	75746831	75746737	75746737	Frame_Shift_Del	C	-	p.A100fs
LIHC	TCGA-DD-A39Y-01	FOS	ENST00000555242.1	chr14	75745679:75745826:75746579:75746831:75747262:75747310,	75746580	75746831	75746737	75746737	Frame_Shift_Del	C	-	p.A100fs
LIHC	TCGA-DD-A39Y-01	FOS	ENST00000555686.1,ENST00000303562.4	chr14	75746761:75746831:75747262:75747370:75747485:75747860,	75747263	75747370	75747345	75747345	Frame_Shift_Del	G	-	p.R159fs
LIHC	TCGA-DD-A39Y-01	TTLL5	ENST00000298832.9,ENST00000555290.1,ENST00000557636.1,ENST00000286650.5,ENST00000556173.1	chr14	76147887:76147970:76149892:76149999:76156534:76156625,	76149893	76149999	76149992	76149992	Frame_Shift_Del	T	-	p.F122fs
LIHC	TCGA-DD-A39Y-01	GPATCH2L	ENST00000312858.5,ENST00000554125.1,ENST00000261530.7	chr14	76618278:76618334:76620696:76621368:76633005:76633070,	76620697	76621368	76620732	76620732	Frame_Shift_Del	C	-	p.A9fs
LIHC	TCGA-DD-A39Y-01	ESRRB	ENST00000505752.1,ENST00000261532.7	chr14	76964556:76964795:76965068:76965255:76966205:76966409,	76965069	76965255	76965183	76965183	Frame_Shift_Del	C	-	p.P472fs
LIHC	TCGA-DD-A39Y-01	TMEM63C	ENST00000298351.4	chr14	77706817:77706951:77708689:77708812:77709245:77709399,	77708690	77708812	77708730	77708730	Frame_Shift_Del	C	-	p.P369fs
LIHC	TCGA-DD-A39Y-01	TMEM63C	ENST00000298351.4	chr14	77709245:77709399:77710691:77710798:77712282:77712369,	77710692	77710798	77710732	77710732	Frame_Shift_Del	G	-	p.W461fs
LIHC	TCGA-DD-A39Y-01	VIPAS39	ENST00000553888.1,ENST00000557658.1,ENST00000553691.1,ENST00000343765.2,ENST00000556412.1	chr14	77916056:77916095:77917529:77917676:77919641:77919727,	77917530	77917676	77917621	77917621	Frame_Shift_Del	C	-	p.G84fs
LIHC	TCGA-DD-A39Y-01	AHSA1	ENST00000556369.1,ENST00000535854.2,ENST00000216479.3,ENST00000555473.1,ENST00000555133.1	chr14	77931916:77932010:77934425:77934527:77934799:77934851,	77934426	77934527	77934463	77934463	Frame_Shift_Del	A	-	p.E243fs
LIHC	TCGA-DD-A39Y-01	AHSA1	ENST00000216479.3,ENST00000555473.1,ENST00000555133.1	chr14	77934425:77934527:77934799:77934851:77935419:77935590,	77934800	77934851	77934843	77934843	Frame_Shift_Del	G	-	p.W279fs
LIHC	TCGA-DD-A39Y-01	ISM2	ENST00000342219.4,ENST00000472744.1,ENST00000493585.1	chr14	77950665:77950908:77951019:77951262:77964995:77965210,	77951020	77951262	77951147	77951147	Frame_Shift_Del	G	-	p.P86fs
LIHC	TCGA-DD-A39Y-01	SPTLC2	ENST00000216484.2,ENST00000554901.1	chr14	78043109:78043258:78045297:78045452:78063528:78063664,	78045298	78045452	78045421	78045421	Frame_Shift_Del	T	-	p.N120fs
LIHC	TCGA-DD-A39Y-01	ALKBH1	ENST00000216489.3	chr14	78146227:78146313:78161080:78161243:78170711:78170795,	78161081	78161243	78161103	78161103	Frame_Shift_Del	C	-	p.E145fs
LIHC	TCGA-DD-A39Y-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251862	81251862	Frame_Shift_Del	T	-	p.T530fs
LIHC	TCGA-DD-A39Y-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251881	81251881	Frame_Shift_Del	T	-	p.K523fs
LIHC	TCGA-DD-A39Y-01	SEL1L	ENST00000336735.4	chr14	81945955:81946084:81950568:81950741:81952015:81952090,	81950569	81950741	81950572	81950572	Frame_Shift_Del	T	-	p.K681fs
LIHC	TCGA-DD-A39Y-01	SEL1L	ENST00000336735.4	chr14	81945955:81946084:81950568:81950741:81952015:81952090,	81950569	81950741	81950579	81950579	Frame_Shift_Del	C	-	p.G679fs
LIHC	TCGA-DD-A39Y-01	ZC3H14	ENST00000557607.1,ENST00000302216.8	chr14	89042183:89042284:89044328:89044484:89068267:89068353,89042183:89042284:89044328:89044484:89063077:89063152,89042183:89042284:89044328:89044484:89073586:89073707,	89044329	89044484	89044473	89044473	Frame_Shift_Del	A	-	p.E423fs
LIHC	TCGA-DD-A39Y-01	ZC3H14	ENST00000556110.1	chr14	89042183:89042284:89044336:89044484:89068267:89068353,	89044337	89044484	89044473	89044473	Frame_Shift_Del	A	-	p.E423fs
LIHC	TCGA-DD-A39Y-01	EML5	ENST00000553973.1,ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89082161:89082198:89082485:89082586:89083069:89083223,	89082486	89082586	89082581	89082581	Frame_Shift_Del	T	-	p.K1934fs
LIHC	TCGA-DD-A39Y-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087137	89087137	Frame_Shift_Del	C	-	p.G1779fs
LIHC	TCGA-DD-A39Y-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087207	89087207	Frame_Shift_Del	C	-	p.D1756fs
LIHC	TCGA-DD-A39Y-01	EML5	ENST00000380664.5,ENST00000554922.1	chr14	89153559:89153671:89154614:89154817:89160650:89160751,	89154615	89154817	89154774	89154774	Frame_Shift_Del	C	-	p.G861fs
LIHC	TCGA-DD-A39Y-01	FOXN3	ENST00000555353.1,ENST00000557258.1	chr14	89629221:89629313:89647044:89647150:89656727:89656793,89629221:89629313:89647044:89647150:89747293:89747358,	89647045	89647150	89647104	89647104	Frame_Shift_Del	C	-	p.G286fs
LIHC	TCGA-DD-A39Y-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878473	89878473	Frame_Shift_Del	G	-	p.P116fs
LIHC	TCGA-DD-A39Y-01	NRDE2	ENST00000553409.1,ENST00000556189.1,ENST00000357904.3,ENST00000354366.3,ENST00000555903.1	chr14	90745405:90745477:90752697:90752836:90754560:90755229,	90752698	90752836	90752767	90752767	Frame_Shift_Del	A	-	p.F1076fs
LIHC	TCGA-DD-A39Y-01	NRDE2	ENST00000553409.1,ENST00000357904.3,ENST00000354366.3	chr14	90767582:90767716:90769063:90769469:90770278:90770726,	90769064	90769469	90769414	90769414	Frame_Shift_Del	T	-	p.K354fs
LIHC	TCGA-DD-A39Y-01	TTC7B	ENST00000328459.6,ENST00000555894.1	chr14	91059829:91059970:91077085:91077183:91084272:91084367,	91077086	91077183	91077147	91077147	Frame_Shift_Del	G	-	p.T635fs
LIHC	TCGA-DD-A39Y-01	TTC7B	ENST00000357056.2,ENST00000554654.1,ENST00000328459.6,ENST00000555239.1,ENST00000555005.1,ENST00000553972.1	chr14	91077137:91077183:91084272:91084389:91110391:91110552,	91084273	91084389	91084275	91084275	Frame_Shift_Del	G	-	p.P622fs
LIHC	TCGA-DD-A39Y-01	RPS6KA5	ENST00000418736.2,ENST00000554206.1	chr14	91444738:91444868:91467431:91467503:91526675:91526929,	91467432	91467503	91467440	91467440	Frame_Shift_Del	C	-	p.G56fs
LIHC	TCGA-DD-A39Y-01	TC2N	ENST00000340892.5,ENST00000360594.5,ENST00000435962.2	chr14	92253856:92253971:92258710:92258902:92264128:92264240,	92258711	92258902	92258752	92258752	Frame_Shift_Del	T	-	p.M336fs
LIHC	TCGA-DD-A39Y-01	TC2N	ENST00000360594.5,ENST00000556018.1	chr14	92278655:92278889:92280046:92280169:92302714:92302791,	92280047	92280169	92280054	92280054	Frame_Shift_Del	T	-	p.K20fs
LIHC	TCGA-DD-A39Y-01	FBLN5	ENST00000267620.10,ENST00000556154.1,ENST00000342058.4	chr14	92336570:92336729:92343830:92344026:92347635:92347762,	92343831	92344026	92343887	92343887	Frame_Shift_Del	C	-	p.A418fs
LIHC	TCGA-DD-A39Y-01	FBLN5	ENST00000267620.10,ENST00000556154.1,ENST00000342058.4	chr14	92357564:92357681:92361293:92361416:92403290:92403343,	92361294	92361416	92361376	92361376	Frame_Shift_Del	G	-	p.P181fs
LIHC	TCGA-DD-A39Y-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92439060:92439205:92440970:92441087:92441515:92441630,	92440971	92441087	92441021	92441021	Frame_Shift_Del	T	-	p.S1842fs
LIHC	TCGA-DD-A39Y-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92471853	92471853	Frame_Shift_Del	T	-	p.R823fs
LIHC	TCGA-DD-A39Y-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472096	92472096	Frame_Shift_Del	T	-	p.T742fs
LIHC	TCGA-DD-A39Y-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472197	92472197	Frame_Shift_Del	T	-	p.N708fs
LIHC	TCGA-DD-A39Y-01	ATXN3	ENST00000554214.1,ENST00000555816.1,ENST00000556315.1,ENST00000359366.5,ENST00000554040.1,ENST00000556288.1,ENST00000556274.1,ENST00000553488.1,ENST00000554672.1,ENST00000556082.1	chr14	92555073:92555161:92559595:92559662:92560089:92560175,92555111:92555161:92559595:92559662:92562436:92562478,	92559596	92559662	92559599	92559599	Frame_Shift_Del	T	-	p.K128fs
LIHC	TCGA-DD-A39Y-01	NDUFB1	ENST00000553514.1	chr14	92582469:92582573:92583841:92583986:92587985:92588068,92582469:92582573:92583841:92583986:92587539:92587743,92582469:92582573:92583841:92583986:92585192:92585290,	92583842	92583986	92583974	92583974	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-DD-A39Y-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000556418.1,ENST00000216487.7	chr14	93125729:93125814:93142819:93142951:93151331:93151495,	93142820	93142951	93142831	93142831	Frame_Shift_Del	G	-	p.G783fs
LIHC	TCGA-DD-A39Y-01	CHGA	ENST00000216492.5	chr14	93396063:93396160:93397594:93398047:93398714:93398725,	93397595	93398047	93397666	93397666	Frame_Shift_Del	G	-	p.G143fs
LIHC	TCGA-DD-A39Y-01	CHGA	ENST00000216492.5	chr14	93396063:93396160:93397594:93398047:93398714:93398725,	93397595	93398047	93398010	93398010	Frame_Shift_Del	C	-	p.H257fs
LIHC	TCGA-DD-A39Y-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000334746.5	chr14	93719992:93720136:93723540:93723701:93727947:93728023,	93723541	93723701	93723648	93723648	Frame_Shift_Del	T	-	p.R502fs
LIHC	TCGA-DD-A39Y-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760606	93760606	Frame_Shift_Del	A	-	p.S255fs
LIHC	TCGA-DD-A39Y-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760822	93760822	Frame_Shift_Del	T	-	p.I182fs
LIHC	TCGA-DD-A39Y-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761163	93761163	Frame_Shift_Del	T	-	p.K69fs
LIHC	TCGA-DD-A39Y-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761170	93761170	Frame_Shift_Del	G	-	p.L66fs
LIHC	TCGA-DD-A39Y-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1	chr14	94097146:94097254:94100866:94100983:94103561:94103645,	94100867	94100983	94100954	94100954	Frame_Shift_Del	C	-	p.A1957fs
LIHC	TCGA-DD-A39Y-01	ASB2	ENST00000555507.1,ENST00000555019.1,ENST00000315988.4	chr14	94413694:94413866:94417344:94417590:94419697:94419853,	94417345	94417590	94417403	94417403	Frame_Shift_Del	G	-	p.P274fs
LIHC	TCGA-DD-A39Y-01	DDX24	ENST00000330836.5	chr14	94528820:94528967:94545370:94546093:94547464:94547492,	94545371	94546093	94545796	94545796	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-DD-A39Y-01	DDX24	ENST00000555054.1	chr14	94528820:94528967:94545370:94545967:94547464:94547492,	94545371	94545967	94545796	94545796	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-DD-A39Y-01	IFI27L1	ENST00000555341.1,ENST00000393115.3,ENST00000555523.1,ENST00000553664.1,ENST00000554166.1	chr14	94567084:94567117:94568159:94568321:94568822:94568882,	94568160	94568321	94568273	94568273	Frame_Shift_Del	G	-	p.G60fs
LIHC	TCGA-DD-A39Y-01	IFI27L1	ENST00000554562.1,ENST00000556381.1	chr14	94567084:94567117:94568159:94568405:94568822:94568882,	94568160	94568405	94568273	94568273	Frame_Shift_Del	G	-	p.G60fs
LIHC	TCGA-DD-A39Y-01	PPP4R4	ENST00000304338.3	chr14	94731214:94731284:94731723:94731810:94732130:94732224,	94731724	94731810	94731767	94731767	Frame_Shift_Del	C	-	p.I747fs
LIHC	TCGA-DD-A39Y-01	SERPINA10	ENST00000261994.4,ENST00000393096.1,ENST00000554723.1,ENST00000554173.1	chr14	94752444:94752595:94754622:94754896:94756212:94756980,	94754623	94754896	94754866	94754866	Frame_Shift_Del	A	-	p.F290fs
LIHC	TCGA-DD-A39Y-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4	chr14	94847207:94847478:94848928:94849578:94854896:94854926,	94848929	94849578	94848998	94848998	Frame_Shift_Del	T	-	p.I193fs
LIHC	TCGA-DD-A39Y-01	DICER1	ENST00000393063.1,ENST00000529720.1,ENST00000526495.1	chr14	95598947:95599014:95599651:95599840:95606995:95607096,	95599652	95599840	95599722	95599722	Frame_Shift_Del	C	-	p.G25fs
LIHC	TCGA-DD-A39Y-01	DICER1	ENST00000393063.1,ENST00000529720.1,ENST00000526495.1	chr14	95598947:95599014:95599651:95599840:95606995:95607096,	95599652	95599840	95599726	95599726	Frame_Shift_Del	T	-	p.M24fs
LIHC	TCGA-DD-A39Y-01	DICER1	ENST00000393063.1,ENST00000529720.1,ENST00000526495.1	chr14	95598947:95599014:95599651:95599840:95606995:95607096,	95599652	95599840	95599740	95599740	Frame_Shift_Del	G	-	p.P19fs
LIHC	TCGA-DD-A39Y-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669202	95669202	Frame_Shift_Del	T	-	p.K828fs
LIHC	TCGA-DD-A39Y-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669231	95669231	Frame_Shift_Del	G	-	p.H819fs
LIHC	TCGA-DD-A39Y-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670007	95670007	Frame_Shift_Del	G	-	p.P560fs
LIHC	TCGA-DD-A39Y-01	SYNE3	ENST00000555759.1,ENST00000557275.1,ENST00000334258.5,ENST00000553340.1	chr14	95921713:95922061:95923513:95923675:95932267:95932577,	95923514	95923675	95923615	95923615	Frame_Shift_Del	C	-	p.D230fs
LIHC	TCGA-DD-A39Y-01	ATG2B	ENST00000359933.4	chr14	96798641:96798747:96798837:96798992:96800024:96800210,	96798838	96798992	96798914	96798914	Frame_Shift_Del	G	-	p.P429fs
LIHC	TCGA-DD-A39Y-01	AK7	ENST00000267584.4	chr14	96924419:96924549:96937814:96937943:96939023:96939092,	96937815	96937943	96937909	96937909	Frame_Shift_Del	A	-	p.P484fs
LIHC	TCGA-DD-A39Y-01	VRK1	ENST00000216639.3,ENST00000555351.1	chr14	97304098:97304154:97312431:97312501:97313593:97313681,	97312432	97312501	97312447	97312447	Frame_Shift_Del	G	-	p.G78fs
LIHC	TCGA-DD-A39Y-01	BCL11B	ENST00000357195.3	chr14	99640297:99642532:99697681:99697894:99723807:99724173,	99697682	99697894	99697837	99697837	Frame_Shift_Del	G	-	p.P162fs
LIHC	TCGA-DD-A39Y-01	BCL11B	ENST00000357195.3	chr14	99640297:99642532:99697681:99697894:99723807:99724173,	99697682	99697894	99697877	99697877	Frame_Shift_Del	G	-	p.Q149fs
LIHC	TCGA-DD-A39Y-01	SETD3	ENST00000331768.5,ENST00000453764.1	chr14	99876140:99876552:99879287:99879402:99880212:99880271,99872852:99872927:99879287:99879402:99880212:99880271,	99879288	99879402	99879375	99879375	Frame_Shift_Del	C	-	p.R254fs
LIHC	TCGA-DD-A39Y-01	SETD3	ENST00000357563.4,ENST00000453764.1,ENST00000453938.1,ENST00000446066.1	chr14	99924635:99924872:99925449:99925522:99929822:99929915,	99925450	99925522	99925461	99925461	Frame_Shift_Del	T	-	p.N136fs
LIHC	TCGA-DD-A39Y-01	EML1	ENST00000327921.9,ENST00000262233.6,ENST00000334192.4	chr14	100380912:100381034:100384118:100384186:100387125:100387214,	100384119	100384186	100384152	100384152	Frame_Shift_Del	G	-	p.G596fs
LIHC	TCGA-DD-A39Y-01	WARS	ENST00000557239.1	chr14	100820896:100820903:100828044:100828258:100835423:100835558,	100828045	100828258	100828216	100828216	Frame_Shift_Del	T	-	p.M48fs
LIHC	TCGA-DD-A39Y-01	PPP2R5C	ENST00000553890.1	chr14	102229264:102229307:102252354:102252520:102323022:102323094,102229264:102229307:102252354:102252520:102302505:102302769,	102252355	102252520	102252516	102252516	Frame_Shift_Del	A	-	p.L85fs
LIHC	TCGA-DD-A39Y-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675684	102675684	Frame_Shift_Del	C	-	p.P393fs
LIHC	TCGA-DD-A39Y-01	CINP	ENST00000216756.6,ENST00000559504.1,ENST00000559514.1,ENST00000536961.2	chr14	102814847:102815096:102816255:102816385:102822104:102822234,	102816256	102816385	102816360	102816360	Frame_Shift_Del	T	-	p.K111fs
LIHC	TCGA-DD-A39Y-01	CDC42BPB	ENST00000361246.2,ENST00000558321.1,ENST00000561271.1	chr14	103452846:103452917:103465901:103466050:103470264:103470360,	103465902	103466050	103465997	103465997	Frame_Shift_Del	T	-	p.K167fs
LIHC	TCGA-DD-A39Y-01	TNFAIP2	ENST00000559406.1,ENST00000560869.1,ENST00000333007.1	chr14	103592725:103593029:103596076:103596191:103596338:103596370,103593912:103593966:103596076:103596191:103596338:103596370,	103596077	103596191	103596104	103596104	Frame_Shift_Del	G	-	p.V296fs
LIHC	TCGA-DD-A39Y-01	EIF5	ENST00000216554.3,ENST00000558506.1,ENST00000392715.2	chr14	103805508:103805670:103805975:103806140:103806763:103806898,	103805976	103806140	103805991	103805991	Frame_Shift_Del	A	-	p.K309fs
LIHC	TCGA-DD-A39Y-01	MARK3	ENST00000303622.9,ENST00000560417.1,ENST00000440884.3,ENST00000553942.1,ENST00000216288.7,ENST00000558223.1,ENST00000561164.1,ENST00000558698.1,ENST00000429436.2	chr14	103918254:103918320:103923478:103923549:103928741:103928798,	103923479	103923549	103923521	103923521	Frame_Shift_Del	A	-	p.E152fs
LIHC	TCGA-DD-A39Y-01	APOPT1	ENST00000477116.1,ENST00000247618.4,ENST00000409074.2,ENST00000489117.1,ENST00000474271.1	chr14	104037959:104038157:104040443:104040507:104053610:104053701,	104040444	104040507	104040488	104040488	Frame_Shift_Del	G	-	p.L135fs
LIHC	TCGA-DD-A39Y-01	TDRD9	ENST00000557332.1,ENST00000409874.4,ENST00000339063.5	chr14	104508405:104508524:104515944:104516017:104518317:104518618,	104515945	104516017	104515989	104515989	Frame_Shift_Del	G	-	p.W1340fs
LIHC	TCGA-DD-A39Y-01	TDRD9	ENST00000557332.1,ENST00000409874.4,ENST00000339063.5	chr14	104508405:104508524:104515944:104516017:104518317:104518618,	104515945	104516017	104515995	104515995	Frame_Shift_Del	A	-	p.E1342fs
LIHC	TCGA-DD-A39Y-01	ADSSL1	ENST00000555486.1,ENST00000557582.1,ENST00000332972.5,ENST00000553540.1,ENST00000330877.2	chr14	105207175:105207257:105207453:105207580:105208184:105208338,	105207454	105207580	105207522	105207522	Frame_Shift_Del	C	-	p.G288fs
LIHC	TCGA-DD-A39Y-01	SIVA1	ENST00000556195.1,ENST00000329967.6	chr14	105219538:105219656:105222940:105223097:105225764:105225915,105221966:105222161:105222940:105223097:105233126:105233234,105221966:105222161:105222940:105223097:105225764:105225915,	105222941	105223097	105222962	105222962	Frame_Shift_Del	T	-	p.I112fs
LIHC	TCGA-DD-A39Y-01	PLD4	ENST00000557573.1,ENST00000540372.1,ENST00000392593.4	chr14	105395643:105395764:105396314:105396442:105397078:105397138,	105396315	105396442	105396354	105396354	Frame_Shift_Del	G	-	p.R217fs
LIHC	TCGA-DD-A39Y-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021325	23021325	Frame_Shift_Del	C	-	p.G4fs
LIHC	TCGA-DD-A39Y-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616576	25616576	Frame_Shift_Del	T	-	p.I249fs
LIHC	TCGA-DD-A39Y-01	GABRB3	ENST00000541819.2,ENST00000311550.5,ENST00000299267.4	chr15	26828478:26828561:26866460:26866681:27017548:27017616,	26866461	26866681	26866509	26866509	Frame_Shift_Del	T	-	p.N194fs
LIHC	TCGA-DD-A39Y-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28090104:28090198:28096527:28096621:28116299:28116404,	28096528	28096621	28096590	28096590	Frame_Shift_Del	G	-	p.P759fs
LIHC	TCGA-DD-A39Y-01	HERC2	ENST00000261609.7,ENST00000564734.1	chr15	28501234:28501463:28502206:28502407:28505922:28506116,	28502207	28502407	28502327	28502327	Frame_Shift_Del	A	-	p.F799fs
LIHC	TCGA-DD-A39Y-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346563	29346563	Frame_Shift_Del	A	-	p.D159fs
LIHC	TCGA-DD-A39Y-01	FAM189A1	ENST00000261275.4	chr15	29443936:29444044:29488633:29488768:29544571:29544682,	29488634	29488768	29488720	29488720	Frame_Shift_Del	G	-	p.Q146fs
LIHC	TCGA-DD-A39Y-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30000914	30000914	Frame_Shift_Del	T	-	p.T1567fs
LIHC	TCGA-DD-A39Y-01	TJP1	ENST00000545208.2,ENST00000400011.2	chr15	30011096:30011342:30012561:30012912:30018582:30018683,	30012562	30012912	30012897	30012897	Frame_Shift_Del	T	-	p.S810fs
LIHC	TCGA-DD-A39Y-01	FAN1	ENST00000565280.1,ENST00000362065.4	chr15	31206060:31206294:31210366:31210498:31212747:31212856,	31210367	31210498	31210457	31210457	Frame_Shift_Del	A	-	p.A634fs
LIHC	TCGA-DD-A39Y-01	FAN1	ENST00000565280.1,ENST00000562881.1,ENST00000568145.1,ENST00000362065.4	chr15	31220755:31220859:31221405:31221600:31222745:31222842,	31221406	31221600	31221411	31221411	Frame_Shift_Del	C	-	p.F866fs
LIHC	TCGA-DD-A39Y-01	FAN1	ENST00000565280.1,ENST00000562881.1,ENST00000568145.1,ENST00000362065.4	chr15	31220755:31220859:31221405:31221600:31222745:31222842,	31221406	31221600	31221530	31221530	Frame_Shift_Del	G	-	p.W906fs
LIHC	TCGA-DD-A39Y-01	MTMR10	ENST00000435680.1,ENST00000567567.1,ENST00000425768.1,ENST00000566338.1	chr15	31233411:31234275:31235092:31235275:31239332:31239503,	31235093	31235275	31235105	31235105	Frame_Shift_Del	A	-	p.F573fs
LIHC	TCGA-DD-A39Y-01	MTMR10	ENST00000435680.1,ENST00000567567.1,ENST00000425768.1,ENST00000565728.1,ENST00000568604.1,ENST00000563714.1	chr15	31267133:31267206:31269021:31269158:31282979:31283040,	31269022	31269158	31269130	31269130	Frame_Shift_Del	A	-	p.F50fs
LIHC	TCGA-DD-A39Y-01	ARHGAP11A	ENST00000565905.1,ENST00000543522.1,ENST00000564918.1,ENST00000361627.3,ENST00000562481.1	chr15	32926133:32926242:32927977:32928116:32928457:32928497,	32927978	32928116	32928028	32928028	Frame_Shift_Del	A	-	p.A465fs
LIHC	TCGA-DD-A39Y-01	ARHGAP11A	ENST00000565905.1,ENST00000543522.1,ENST00000564918.1,ENST00000361627.3,ENST00000562481.1	chr15	32926133:32926242:32927977:32928116:32928457:32928497,	32927978	32928116	32928109	32928109	Frame_Shift_Del	A	-	p.P492fs
LIHC	TCGA-DD-A39Y-01	SCG5	ENST00000494364.1,ENST00000413748.2,ENST00000497208.1	chr15	32933902:32933979:32935786:32936019:32971966:32972116,	32935787	32936019	32936003	32936003	Frame_Shift_Del	C	-	p.G70fs
LIHC	TCGA-DD-A39Y-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34130740	34130740	Frame_Shift_Del	T	-	p.F4188fs
LIHC	TCGA-DD-A39Y-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34445148	34445148	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A39Y-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34445168	34445168	Frame_Shift_Del	T	-	p.K87fs
LIHC	TCGA-DD-A39Y-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35168135:35168207:35174702:35174840:35176725:35176935,	35174703	35174840	35174733	35174733	Frame_Shift_Del	T	-	p.K1045fs
LIHC	TCGA-DD-A39Y-01	AQR	ENST00000543879.2	chr15	35252974:35253015:35256434:35256491:35261739:35261934,	35256435	35256491	35256480	35256480	Frame_Shift_Del	T	-	p.K29fs
LIHC	TCGA-DD-A39Y-01	MEIS2	ENST00000338564.5,ENST00000219869.9,ENST00000557796.2,ENST00000607277.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000397624.3,ENST00000340545.5,ENST00000382766.2,ENST00000559561.1,ENST00000561208.1,ENST00000424352.2	chr15	37242524:37242601:37329014:37329160:37375971:37376086,	37329015	37329160	37329063	37329063	Frame_Shift_Del	G	-	p.P284fs
LIHC	TCGA-DD-A39Y-01	RASGRP1	ENST00000558432.1,ENST00000310803.5,ENST00000450598.2,ENST00000561180.1,ENST00000539159.1,ENST00000414708.2	chr15	38782754:38782889:38786582:38786968:38790994:38791147,	38786583	38786968	38786637	38786637	Frame_Shift_Del	T	-	p.K735fs
LIHC	TCGA-DD-A39Y-01	RASGRP1	ENST00000557875.1	chr15	38786652:38786968:38790994:38791385:38792303:38792340,	38790995	38791385	38791122	38791122	Frame_Shift_Del	T	-	p.Q582fs
LIHC	TCGA-DD-A39Y-01	RASGRP1	ENST00000559830.1	chr15	38786652:38786968:38790994:38791147:38792303:38792340,38782754:38782889:38790994:38791147:38792303:38792340,	38790995	38791147	38791122	38791122	Frame_Shift_Del	T	-	p.Q582fs
LIHC	TCGA-DD-A39Y-01	THBS1	ENST00000260356.5	chr15	39885597:39885869:39886299:39886397:39886501:39886641,	39886300	39886397	39886389	39886389	Frame_Shift_Del	T	-	p.G1119fs
LIHC	TCGA-DD-A39Y-01	INO80	ENST00000558357.1	chr15	41308285:41308413:41313097:41313323:41319793:41319797,41297790:41297885:41313097:41313323:41319793:41319797,	41313098	41313323	41313239	41313239	Frame_Shift_Del	C	-	p.A1046fs
LIHC	TCGA-DD-A39Y-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41366567:41366763:41371898:41372102:41373217:41373271,	41371899	41372102	41372054	41372054	Frame_Shift_Del	G	-	p.Q326fs
LIHC	TCGA-DD-A39Y-01	CHP1	ENST00000560965.1,ENST00000560633.1,ENST00000334660.5,ENST00000560411.1,ENST00000560397.1	chr15	41549107:41549188:41554953:41555081:41562754:41562816,	41554954	41555081	41555022	41555022	Frame_Shift_Del	A	-	p.E97fs
LIHC	TCGA-DD-A39Y-01	CHP1	ENST00000558351.1,ENST00000334660.5,ENST00000560411.1	chr15	41562754:41562816:41570964:41571087:41571533:41571600,	41570965	41571087	41571069	41571069	Frame_Shift_Del	T	-	p.S172fs
LIHC	TCGA-DD-A39Y-01	NUSAP1	ENST00000560747.1,ENST00000260359.6,ENST00000414849.2,ENST00000559659.1,ENST00000450318.1,ENST00000560177.1,ENST00000558582.1,ENST00000559596.1	chr15	41625110:41625248:41634583:41634652:41641295:41641439,	41634584	41634652	41634634	41634634	Frame_Shift_Del	A	-	p.R48fs
LIHC	TCGA-DD-A39Y-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021442	42021442	Frame_Shift_Del	A	-	p.R1246fs
LIHC	TCGA-DD-A39Y-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42053936:42054048:42054326:42054560:42057083:42057260,	42054327	42054560	42054403	42054403	Frame_Shift_Del	A	-	p.R2529fs
LIHC	TCGA-DD-A39Y-01	CAPN3	ENST00000397204.4	chr15	42695938:42695975:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42701500:42701578,	42698124	42698141	42698130	42698130	Frame_Shift_Del	A	-	p.K598fs
LIHC	TCGA-DD-A39Y-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742177	42742177	Frame_Shift_Del	T	-	p.T742fs
LIHC	TCGA-DD-A39Y-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742679	42742679	Frame_Shift_Del	T	-	p.K574fs
LIHC	TCGA-DD-A39Y-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742957	42742957	Frame_Shift_Del	A	-	p.S482fs
LIHC	TCGA-DD-A39Y-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42743876	42743876	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-DD-A39Y-01	ZNF106	ENST00000567041.1,ENST00000564754.1	chr15	42743864:42744152:42749155:42749356:42758250:42758312,	42749156	42749356	42749203	42749203	Frame_Shift_Del	A	-	p.F67fs
LIHC	TCGA-DD-A39Y-01	ZNF106	ENST00000567041.1,ENST00000564754.1	chr15	42743864:42744152:42749155:42749356:42758250:42758312,	42749156	42749356	42749286	42749286	Frame_Shift_Del	A	-	p.S40fs
LIHC	TCGA-DD-A39Y-01	HAUS2	ENST00000562398.1,ENST00000564279.1	chr15	42850395:42850488:42851536:42851606:42855946:42856013,42850395:42850488:42851536:42851606:42853467:42853600,42841064:42841163:42851536:42851606:42853467:42853600,42841064:42841163:42851536:42851606:42852979:42853068,42850395:42850488:42851536:42851606:42852979:42853068,	42851537	42851606	42851600	42851600	Frame_Shift_Del	T	-	p.F84fs
LIHC	TCGA-DD-A39Y-01	TTBK2	ENST00000267890.6,ENST00000567274.1,ENST00000567840.1	chr15	43075616:43075833:43086841:43086999:43102811:43102937,	43086842	43086999	43086844	43086844	Frame_Shift_Del	A	-	p.I326fs
LIHC	TCGA-DD-A39Y-01	TTBK2	ENST00000267890.6,ENST00000567840.1	chr15	43103885:43103978:43109229:43109295:43120125:43120230,	43109230	43109295	43109275	43109275	Frame_Shift_Del	A	-	p.F186fs
LIHC	TCGA-DD-A39Y-01	UBR1	ENST00000382177.2,ENST00000290650.4	chr15	43270077:43270145:43276094:43276191:43277084:43277140,	43276095	43276191	43276117	43276117	Frame_Shift_Del	T	-	p.K1376fs
LIHC	TCGA-DD-A39Y-01	UBR1	ENST00000382177.2,ENST00000290650.4	chr15	43290389:43290463:43294752:43294902:43296034:43296128,	43294753	43294902	43294762	43294762	Frame_Shift_Del	T	-	p.K1217fs
LIHC	TCGA-DD-A39Y-01	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43348541:43348640:43350538:43350627:43351282:43351390,	43350539	43350627	43350584	43350584	Frame_Shift_Del	A	-	p.F379fs
LIHC	TCGA-DD-A39Y-01	TMEM62	ENST00000563859.1,ENST00000260403.2,ENST00000569369.1	chr15	43470804:43470909:43473378:43473497:43476457:43476583,	43473379	43473497	43473387	43473387	Frame_Shift_Del	T	-	p.F500fs
LIHC	TCGA-DD-A39Y-01	EPB42	ENST00000441366.2,ENST00000568508.1,ENST00000300215.3	chr15	43503613:43503732:43507292:43507526:43508465:43508651,	43507293	43507526	43507422	43507422	Frame_Shift_Del	A	-	p.S131fs
LIHC	TCGA-DD-A39Y-01	TGM7	ENST00000452443.2	chr15	43577011:43577150:43579477:43579655:43579738:43579867,	43579478	43579655	43579560	43579560	Frame_Shift_Del	G	-	p.A261fs
LIHC	TCGA-DD-A39Y-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43672281:43672361:43675500:43675702:43677988:43678114,	43675501	43675702	43675532	43675532	Frame_Shift_Del	A	-	p.K185fs
LIHC	TCGA-DD-A39Y-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3,ENST00000411772.1	chr15	43730521:43730614:43733723:43733781:43738584:43738788,	43733724	43733781	43733757	43733757	Frame_Shift_Del	T	-	p.N1017fs
LIHC	TCGA-DD-A39Y-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43738730:43738788:43739563:43739683:43748089:43748222,	43739564	43739683	43739595	43739595	Frame_Shift_Del	T	-	p.K930fs
LIHC	TCGA-DD-A39Y-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748661	43748661	Frame_Shift_Del	T	-	p.K710fs
LIHC	TCGA-DD-A39Y-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44060720:44060795:44061715:44061844:44062447:44062527,	44061716	44061844	44061733	44061733	Frame_Shift_Del	T	-	p.N385fs
LIHC	TCGA-DD-A39Y-01	WDR76	ENST00000381246.2,ENST00000263795.6	chr15	44134825:44134869:44136098:44136252:44143284:44143443,	44136099	44136252	44136148	44136148	Frame_Shift_Del	A	-	p.K310fs
LIHC	TCGA-DD-A39Y-01	WDR76	ENST00000381246.2,ENST00000263795.6	chr15	44136098:44136252:44143284:44143443:44149143:44149361,	44143285	44143443	44143316	44143316	Frame_Shift_Del	T	-	p.V355fs
LIHC	TCGA-DD-A39Y-01	FRMD5	ENST00000421674.1,ENST00000451277.1,ENST00000402883.1,ENST00000458630.1	chr15	44211964:44212007:44216402:44216507:44487150:44487238,	44216403	44216507	44216496	44216496	Frame_Shift_Del	T	-	p.K38fs
LIHC	TCGA-DD-A39Y-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44921430:44921586:44925702:44925835:44941063:44941209,	44925703	44925835	44925801	44925801	Frame_Shift_Del	T	-	p.N546fs
LIHC	TCGA-DD-A39Y-01	PATL2	ENST00000558481.1,ENST00000434130.1,ENST00000560775.1	chr15	44965432:44965575:44966347:44966428:44967683:44967817,	44966348	44966428	44966409	44966409	Frame_Shift_Del	G	-	p.P81fs
LIHC	TCGA-DD-A39Y-01	DUOX2	ENST00000603300.1,ENST00000389039.6	chr15	45384852:45386470:45386760:45386889:45387133:45387289,	45386761	45386889	45386863	45386863	Frame_Shift_Del	T	-	p.K1474fs
LIHC	TCGA-DD-A39Y-01	SEMA6D	ENST00000316364.5,ENST00000536845.2,ENST00000560006.1	chr15	48058812:48058874:48060777:48060945:48062693:48062962,48059233:48059290:48060777:48060945:48062693:48062962,	48060778	48060945	48060882	48060882	Frame_Shift_Del	T	-	p.F624fs
LIHC	TCGA-DD-A39Y-01	MYEF2	ENST00000324324.7	chr15	48441228:48441280:48441359:48441568:48443669:48443768,48441228:48441280:48441359:48441568:48443296:48443368,	48441360	48441568	48441430	48441430	Frame_Shift_Del	A	-	p.L506fs
LIHC	TCGA-DD-A39Y-01	SLC12A1	ENST00000559641.1,ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48539533:48539657:48541771:48541873:48543811:48543967,	48541772	48541873	48541807	48541807	Frame_Shift_Del	T	-	p.F575fs
LIHC	TCGA-DD-A39Y-01	DUT	ENST00000558367.1,ENST00000331200.3,ENST00000559852.1,ENST00000558472.1,ENST00000558813.1,ENST00000455976.2,ENST00000559416.1	chr15	48633485:48633560:48633711:48633782:48634218:48634230,	48633712	48633782	48633754	48633754	Frame_Shift_Del	T	-	p.I225fs
LIHC	TCGA-DD-A39Y-01	SHC4	ENST00000332408.4,ENST00000537958.1,ENST00000396535.3	chr15	49117975:49118323:49126965:49127219:49135605:49135785,	49126966	49127219	49127063	49127063	Frame_Shift_Del	A	-	p.L547fs
LIHC	TCGA-DD-A39Y-01	SECISBP2L	ENST00000380927.2,ENST00000261847.3,ENST00000559471.1	chr15	49320649:49320879:49325161:49325297:49327530:49327653,	49325162	49325297	49325248	49325248	Frame_Shift_Del	T	-	p.N193fs
LIHC	TCGA-DD-A39Y-01	SECISBP2L	ENST00000380927.2,ENST00000261847.3,ENST00000559471.1	chr15	49320649:49320879:49325161:49325297:49327530:49327653,	49325162	49325297	49325270	49325270	Frame_Shift_Del	T	-	p.S186fs
LIHC	TCGA-DD-A39Y-01	FAM227B	ENST00000561319.1,ENST00000559905.1,ENST00000560246.1,ENST00000561064.1,ENST00000299338.6,ENST00000558615.1,ENST00000558594.1	chr15	49880212:49880280:49881972:49882204:49903411:49903465,	49881973	49882204	49882141	49882141	Frame_Shift_Del	T	-	p.I57fs
LIHC	TCGA-DD-A39Y-01	SLC27A2	ENST00000380902.4,ENST00000544960.1,ENST00000267842.5,ENST00000559938.1	chr15	50497549:50497560:50515161:50515356:50518184:50518275,	50515162	50515356	50515317	50515317	Frame_Shift_Del	A	-	p.R376fs
LIHC	TCGA-DD-A39Y-01	USP8	ENST00000433963.1,ENST00000425032.3,ENST00000559329.1,ENST00000560527.1,ENST00000560730.1,ENST00000396444.3,ENST00000307179.4	chr15	50754476:50754519:50757243:50757388:50763829:50763932,	50757244	50757388	50757281	50757281	Frame_Shift_Del	G	-	p.T193fs
LIHC	TCGA-DD-A39Y-01	TRPM7	ENST00000313478.7,ENST00000560955.1,ENST00000560638.1	chr15	50897062:50897341:50899396:50899525:50901777:50901921,	50899397	50899525	50899424	50899424	Frame_Shift_Del	A	-	p.F894fs
LIHC	TCGA-DD-A39Y-01	TRPM7	ENST00000313478.7,ENST00000560955.1,ENST00000560638.1	chr15	50897062:50897341:50899396:50899525:50901777:50901921,	50899397	50899525	50899490	50899490	Frame_Shift_Del	A	-	p.F872fs
LIHC	TCGA-DD-A39Y-01	SPPL2A	ENST00000558934.1,ENST00000261854.5	chr15	51023161:51023236:51024799:51024881:51028297:51028399,	51024800	51024881	51024823	51024823	Frame_Shift_Del	T	-	p.T331fs
LIHC	TCGA-DD-A39Y-01	LEO1	ENST00000315141.5	chr15	52254585:52254690:52257945:52258701:52263884:52263973,	52257946	52258701	52258349	52258349	Frame_Shift_Del	T	-	p.K137fs
LIHC	TCGA-DD-A39Y-01	MYO5C	ENST00000443683.2,ENST00000261839.7,ENST00000560809.1,ENST00000558902.1	chr15	52539113:52539211:52539654:52539789:52540896:52540976,	52539655	52539789	52539766	52539766	Frame_Shift_Del	A	-	p.F590fs
LIHC	TCGA-DD-A39Y-01	FAM214A	ENST00000534964.2,ENST00000399202.4,ENST00000546305.2,ENST00000261844.7	chr15	52879347:52879416:52885774:52885933:52892323:52892432,	52885775	52885933	52885847	52885847	Frame_Shift_Del	G	-	p.P912fs
LIHC	TCGA-DD-A39Y-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652300	55652300	Frame_Shift_Del	T	-	p.E557fs
LIHC	TCGA-DD-A39Y-01	NEDD4	ENST00000506154.1,ENST00000338963.2,ENST00000435532.3,ENST00000508871.1,ENST00000508342.1,ENST00000503468.1	chr15	56144621:56144741:56148328:56148394:56152604:56152772,	56148329	56148394	56148353	56148353	Frame_Shift_Del	A	-	p.F753fs
LIHC	TCGA-DD-A39Y-01	TEX9	ENST00000352903.2,ENST00000537232.1,ENST00000558083.2,ENST00000561221.2	chr15	56681515:56681598:56683440:56683616:56686362:56686445,	56683441	56683616	56683519	56683519	Frame_Shift_Del	A	-	p.A83fs
LIHC	TCGA-DD-A39Y-01	TEX9	ENST00000352903.2,ENST00000537232.1	chr15	56686918:56687032:56704499:56704634:56719802:56719937,	56704500	56704634	56704512	56704512	Frame_Shift_Del	A	-	p.K206fs
LIHC	TCGA-DD-A39Y-01	ZNF280D	ENST00000267807.7,ENST00000560002.1,ENST00000559237.1,ENST00000559000.1	chr15	56946582:56946701:56950621:56950684:56958592:56958733,	56950622	56950684	56950653	56950653	Frame_Shift_Del	A	-	p.C663fs
LIHC	TCGA-DD-A39Y-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58465266:58465404:58467116:58467235:58471326:58471544,	58467117	58467235	58467180	58467180	Frame_Shift_Del	T	-	p.I147fs
LIHC	TCGA-DD-A39Y-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58467116:58467235:58471326:58471544:58476159:58476639,	58471327	58471544	58471479	58471479	Frame_Shift_Del	C	-	p.N216fs
LIHC	TCGA-DD-A39Y-01	LIPC	ENST00000356113.6,ENST00000433326.2,ENST00000299022.5	chr15	58853062:58853180:58855703:58855922:58860914:58861072,	58855704	58855922	58855796	58855796	Frame_Shift_Del	A	-	p.E421fs
LIHC	TCGA-DD-A39Y-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
LIHC	TCGA-DD-A39Y-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
LIHC	TCGA-DD-A39Y-01	MYO1E	ENST00000288235.4	chr15	59506838:59506919:59510089:59510286:59515257:59515390,	59510090	59510286	59510199	59510199	Frame_Shift_Del	C	-	p.G334fs
LIHC	TCGA-DD-A39Y-01	BNIP2	ENST00000267859.3,ENST00000415213.2,ENST00000439052.1,ENST00000607373.1	chr15	59961090:59961189:59961474:59961561:59963381:59963513,	59961475	59961561	59961550	59961550	Frame_Shift_Del	T	-	p.N361fs
LIHC	TCGA-DD-A39Y-01	ANXA2	ENST00000504475.2	chr15	60641273:60641396:60643391:60643450:60643922:60644018,60639540:60639888:60643391:60643450:60643922:60644018,	60643392	60643450	60643427	60643427	Frame_Shift_Del	G	-	p.L268fs
LIHC	TCGA-DD-A39Y-01	RORA	ENST00000309157.4,ENST00000261523.5,ENST00000335670.6,ENST00000449337.2	chr15	60797804:60797828:60803424:60803820:60806814:60806956,	60803425	60803820	60803793	60803793	Frame_Shift_Del	T	-	p.K151fs
LIHC	TCGA-DD-A39Y-01	RAB8B	ENST00000448330.2,ENST00000558990.1,ENST00000559006.1,ENST00000321437.4,ENST00000559927.1	chr15	63541843:63541904:63547705:63547783:63548703:63548793,	63547706	63547783	63547757	63547757	Frame_Shift_Del	A	-	p.K100fs
LIHC	TCGA-DD-A39Y-01	RAB8B	ENST00000558119.1,ENST00000321437.4,ENST00000559927.1	chr15	63551825:63551891:63554890:63554941:63555725:63555795,	63554891	63554941	63554923	63554923	Frame_Shift_Del	A	-	p.T171fs
LIHC	TCGA-DD-A39Y-01	RAB8B	ENST00000558119.1,ENST00000321437.4,ENST00000559927.1	chr15	63551825:63551891:63554890:63554941:63555725:63555795,	63554891	63554941	63554935	63554935	Frame_Shift_Del	A	-	p.R175fs
LIHC	TCGA-DD-A39Y-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000561442.1,ENST00000559771.1	chr15	63824845:63824906:63829223:63829355:63845913:63845932,	63829224	63829355	63829242	63829242	Frame_Shift_Del	A	-	p.A35fs
LIHC	TCGA-DD-A39Y-01	USP3	ENST00000380324.3,ENST00000559711.1,ENST00000559257.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000539772.1,ENST00000538686.2,ENST00000559192.1,ENST00000540797.1	chr15	63866521:63866602:63880503:63880622:63880900:63881014,	63880504	63880622	63880592	63880592	Frame_Shift_Del	A	-	p.T373fs
LIHC	TCGA-DD-A39Y-01	HERC1	ENST00000443617.2,ENST00000560897.1	chr15	63926161:63926169:63926931:63927087:63928159:63928341,	63926932	63927087	63926977	63926977	Frame_Shift_Del	T	-	p.K4175fs
LIHC	TCGA-DD-A39Y-01	HERC1	ENST00000443617.2,ENST00000561400.1	chr15	64004973:64005094:64005551:64005864:64008500:64008672,	64005552	64005864	64005793	64005793	Frame_Shift_Del	C	-	p.A1408fs
LIHC	TCGA-DD-A39Y-01	TRIP4	ENST00000261884.3	chr15	64717738:64717830:64737204:64737307:64747195:64747435,	64737205	64737307	64737280	64737280	Frame_Shift_Del	T	-	p.F551fs
LIHC	TCGA-DD-A39Y-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966317	64966317	Frame_Shift_Del	C	-	p.P422fs
LIHC	TCGA-DD-A39Y-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966921	64966921	Frame_Shift_Del	C	-	p.A623fs
LIHC	TCGA-DD-A39Y-01	ZNF609	ENST00000326648.3	chr15	64972844:64973061:64973507:64973586:64973890:64978264,	64973508	64973586	64973567	64973567	Frame_Shift_Del	C	-	p.P1409fs
LIHC	TCGA-DD-A39Y-01	PIF1	ENST00000559239.1,ENST00000268043.4,ENST00000333425.6	chr15	65110455:65110543:65111315:65111422:65113180:65113287,65110455:65110543:65111315:65111422:65112045:65112185,	65111316	65111422	65111369	65111369	Frame_Shift_Del	G	-	p.L463fs
LIHC	TCGA-DD-A39Y-01	RASL12	ENST00000434605.2,ENST00000421977.3,ENST00000220062.4	chr15	65347114:65347612:65350764:65350955:65351682:65351756,	65350765	65350955	65350944	65350944	Frame_Shift_Del	C	-	p.R82fs
LIHC	TCGA-DD-A39Y-01	IGDCC3	ENST00000558354.1,ENST00000327987.4	chr15	65625594:65625753:65627065:65627203:65627628:65627759,	65627066	65627203	65627160	65627160	Frame_Shift_Del	C	-	p.G243fs
LIHC	TCGA-DD-A39Y-01	DPP8	ENST00000300141.6,ENST00000339244.5,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6,ENST00000558529.1	chr15	65790288:65790370:65792943:65793117:65799580:65799693,	65792944	65793117	65793066	65793066	Frame_Shift_Del	T	-	p.R158fs
LIHC	TCGA-DD-A39Y-01	IQCH	ENST00000358767.3,ENST00000335894.4,ENST00000360277.4,ENST00000514049.1,ENST00000546225.1	chr15	67692451:67692643:67709268:67709389:67713628:67713915,	67709269	67709389	67709295	67709295	Frame_Shift_Del	G	-	p.E709fs
LIHC	TCGA-DD-A39Y-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68473549:68473692:68475967:68476005:68479879:68480402,	68475968	68476005	68475994	68475994	Frame_Shift_Del	G	-	p.G553fs
LIHC	TCGA-DD-A39Y-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331221	69331221	Frame_Shift_Del	C	-	p.P449fs
LIHC	TCGA-DD-A39Y-01	GLCE	ENST00000261858.2	chr15	69502654:69502745:69548132:69548731:69553425:69553668,	69548133	69548731	69548398	69548398	Frame_Shift_Del	C	-	p.P86fs
LIHC	TCGA-DD-A39Y-01	KIF23	ENST00000260363.4,ENST00000352331.4,ENST00000558585.1,ENST00000395392.2,ENST00000537891.1,ENST00000559456.1,ENST00000559279.1,ENST00000561089.1	chr15	69728476:69728600:69728902:69729061:69730586:69730699,	69728903	69729061	69728957	69728957	Frame_Shift_Del	A	-	p.E484fs
LIHC	TCGA-DD-A39Y-01	UACA	ENST00000560523.1,ENST00000379983.2,ENST00000558758.1,ENST00000322954.6,ENST00000558308.1,ENST00000560441.1	chr15	70975096:70975134:70976603:70976785:70979878:70979982,	70976604	70976785	70976723	70976723	Frame_Shift_Del	T	-	p.N222fs
LIHC	TCGA-DD-A39Y-01	LRRC49	ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558137.1,ENST00000560107.2,ENST00000559670.1,ENST00000561081.1,ENST00000260382.5,ENST00000443425.2	chr15	71196890:71197094:71203870:71203937:71211388:71211532,	71203871	71203937	71203901	71203901	Frame_Shift_Del	A	-	p.L177fs
LIHC	TCGA-DD-A39Y-01	LRRC49	ENST00000559685.1,ENST00000559069.1	chr15	71272439:71272523:71276432:71276596:71300717:71300777,71256123:71256271:71276432:71276596:71300717:71300777,	71276433	71276596	71276439	71276439	Frame_Shift_Del	A	-	p.K338fs
LIHC	TCGA-DD-A39Y-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190314	72190314	Frame_Shift_Del	T	-	p.K1510fs
LIHC	TCGA-DD-A39Y-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000566885.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5,ENST00000567560.1	chr15	72270511:72270633:72283443:72283578:72286809:72286926,	72283444	72283578	72283549	72283549	Frame_Shift_Del	A	-	p.F539fs
LIHC	TCGA-DD-A39Y-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000566885.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5,ENST00000567560.1	chr15	72313258:72313358:72320071:72320134:72324834:72324929,	72320072	72320134	72320119	72320119	Frame_Shift_Del	T	-	p.K317fs
LIHC	TCGA-DD-A39Y-01	PKM	ENST00000567087.1,ENST00000564178.1,ENST00000569857.1,ENST00000389093.3,ENST00000562997.1,ENST00000568459.1,ENST00000565154.1,ENST00000561609.1,ENST00000319622.6,ENST00000562784.1,ENST00000335181.5,ENST00000565184.1	chr15	72502123:72502200:72502687:72502819:72509749:72509792,	72502688	72502819	72502719	72502719	Frame_Shift_Del	C	-	p.G116fs
LIHC	TCGA-DD-A39Y-01	BBS4	ENST00000569338.1,ENST00000268057.4,ENST00000565160.1,ENST00000561914.1	chr15	72978857:72978905:72987517:72987569:73002040:73002120,72978577:72978592:72987517:72987569:73002040:73002120,	72987518	72987569	72987563	72987563	Frame_Shift_Del	A	-	p.K25fs
LIHC	TCGA-DD-A39Y-01	NEO1	ENST00000261908.6,ENST00000560262.1,ENST00000339362.5,ENST00000558964.1	chr15	73408880:73409198:73414865:73415141:73418757:73418911,	73414866	73415141	73415066	73415066	Frame_Shift_Del	G	-	p.G217fs
LIHC	TCGA-DD-A39Y-01	NEO1	ENST00000261908.6,ENST00000560262.1,ENST00000560328.1,ENST00000339362.5,ENST00000558964.1	chr15	73547057:73547170:73551106:73551217:73552611:73552806,	73551107	73551217	73551116	73551116	Frame_Shift_Del	G	-	p.R701fs
LIHC	TCGA-DD-A39Y-01	EDC3	ENST00000315127.4,ENST00000568176.1,ENST00000426797.3	chr15	74932901:74932960:74948073:74948409:74963795:74963940,	74948074	74948409	74948215	74948215	Frame_Shift_Del	T	-	p.R228fs
LIHC	TCGA-DD-A39Y-01	LMAN1L	ENST00000379709.3,ENST00000309664.5	chr15	75115899:75116023:75116691:75116819:75117816:75118095,	75116692	75116819	75116775	75116775	Frame_Shift_Del	C	-	p.Y469fs
LIHC	TCGA-DD-A39Y-01	LMAN1L	ENST00000565585.1	chr15	75114982:75115050:75115899:75116819:75117813:75118095,	75115900	75116819	75116775	75116775	Frame_Shift_Del	C	-	p.Y469fs
LIHC	TCGA-DD-A39Y-01	ULK3	ENST00000566631.1,ENST00000568273.1,ENST00000561725.1,ENST00000440863.2,ENST00000570276.1,ENST00000568667.1,ENST00000568210.1,ENST00000569437.1	chr15	75130492:75130533:75130606:75130685:75130780:75130843,	75130607	75130685	75130667	75130667	Frame_Shift_Del	C	-	p.E396fs
LIHC	TCGA-DD-A39Y-01	PPCDC	ENST00000568649.1,ENST00000568207.1	chr15	75315945:75315967:75320587:75320794:75340893:75341062,75315945:75315967:75320587:75320794:75335781:75335833,	75320588	75320794	75320707	75320707	Frame_Shift_Del	A	-	p.R16fs
LIHC	TCGA-DD-A39Y-01	PPCDC	ENST00000342932.3,ENST00000563393.1,ENST00000569562.1	chr15	75320589:75320794:75336726:75336855:75340893:75340989,75335781:75335877:75336726:75336855:75340893:75340989,	75336727	75336855	75336819	75336819	Frame_Shift_Del	G	-	p.L108fs
LIHC	TCGA-DD-A39Y-01	MAN2C1	ENST00000565683.1	chr15	75651399:75651532:75651668:75651779:75651960:75652116,	75651669	75651779	75651695	75651695	Frame_Shift_Del	G	-	p.P678fs
LIHC	TCGA-DD-A39Y-01	MAN2C1	ENST00000563441.1,ENST00000569482.1,ENST00000563368.1,ENST00000563622.1,ENST00000267978.5	chr15	75651399:75651494:75651668:75651766:75651960:75652116,	75651669	75651766	75651695	75651695	Frame_Shift_Del	G	-	p.P678fs
LIHC	TCGA-DD-A39Y-01	MAN2C1	ENST00000565683.1	chr15	75651399:75651532:75651668:75651779:75651960:75652116,	75651669	75651779	75651720	75651720	Frame_Shift_Del	G	-	p.H670fs
LIHC	TCGA-DD-A39Y-01	MAN2C1	ENST00000563441.1,ENST00000569482.1,ENST00000563368.1,ENST00000563622.1,ENST00000267978.5	chr15	75651399:75651494:75651668:75651766:75651960:75652116,	75651669	75651766	75651720	75651720	Frame_Shift_Del	G	-	p.H670fs
LIHC	TCGA-DD-A39Y-01	UBE2Q2	ENST00000338677.4,ENST00000267938.4,ENST00000426727.2,ENST00000561851.1,ENST00000569423.1	chr15	76161291:76161351:76165768:76165909:76175706:76175765,76161291:76161351:76165768:76165909:76168527:76168612,	76165769	76165909	76165823	76165823	Frame_Shift_Del	A	-	p.K169fs
LIHC	TCGA-DD-A39Y-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76696864:76697020:76726418:76726651:76763552:76763676,	76726419	76726651	76726470	76726470	Frame_Shift_Del	T	-	p.N841fs
LIHC	TCGA-DD-A39Y-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76696864:76697020:76726418:76726651:76763552:76763676,	76726419	76726651	76726601	76726601	Frame_Shift_Del	T	-	p.K797fs
LIHC	TCGA-DD-A39Y-01	TSPAN3	ENST00000561277.1	chr15	77346519:77346621:77348405:77348597:77363233:77363376,77348130:77348205:77348405:77348597:77363346:77363464,	77348406	77348597	77348457	77348457	Frame_Shift_Del	C	-	p.G68fs
LIHC	TCGA-DD-A39Y-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425820	77425820	Frame_Shift_Del	A	-	p.S1202fs
LIHC	TCGA-DD-A39Y-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472298	77472298	Frame_Shift_Del	G	-	p.T658fs
LIHC	TCGA-DD-A39Y-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472771	77472771	Frame_Shift_Del	T	-	p.S503fs
LIHC	TCGA-DD-A39Y-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77474065	77474065	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A39Y-01	IREB2	ENST00000258886.8,ENST00000560840.1,ENST00000558570.1,ENST00000560440.1	chr15	78732136:78732223:78755263:78755429:78757592:78757606,	78755264	78755429	78755395	78755395	Frame_Shift_Del	T	-	p.F81fs
LIHC	TCGA-DD-A39Y-01	HYKK	ENST00000388988.4,ENST00000566332.1,ENST00000360519.3,ENST00000566289.1	chr15	78799958:78800013:78805425:78805767:78807309:78807449,	78805426	78805767	78805589	78805589	Frame_Shift_Del	A	-	p.S53fs
LIHC	TCGA-DD-A39Y-01	PSMA4	ENST00000559365.1,ENST00000560217.1,ENST00000560737.1,ENST00000559934.1,ENST00000413382.2,ENST00000559082.1,ENST00000044462.7,ENST00000560099.1	chr15	78837975:78838106:78838916:78839040:78841131:78841162,	78838917	78839040	78839035	78839035	Frame_Shift_Del	A	-	p.E209fs
LIHC	TCGA-DD-A39Y-01	CHRNB4	ENST00000261751.3	chr15	78916749:78917633:78921308:78922287:78923417:78923527,	78921309	78922287	78921420	78921420	Frame_Shift_Del	G	-	p.P409fs
LIHC	TCGA-DD-A39Y-01	ADAMTS7	ENST00000565793.1	chr15	79066965:79067135:79068529:79069930:79080572:79080640,	79068530	79069930	79068644	79068644	Frame_Shift_Del	C	-	p.G531fs
LIHC	TCGA-DD-A39Y-01	ADAMTS7	ENST00000568712.1,ENST00000565793.1,ENST00000388820.4,ENST00000566303.1	chr15	79082030:79082180:79083011:79083136:79083481:79083565,	79083012	79083136	79083055	79083055	Frame_Shift_Del	C	-	p.D329fs
LIHC	TCGA-DD-A39Y-01	MORF4L1	ENST00000558522.1,ENST00000379535.4,ENST00000558830.1,ENST00000558502.1,ENST00000426013.2,ENST00000331268.5,ENST00000559751.1,ENST00000560422.1,ENST00000559930.1,ENST00000559158.1,ENST00000559345.1,ENST00000559690.1,ENST00000559258.1,ENST00000559244.1	chr15	79178540:79178569:79179610:79179691:79183330:79183356,	79179611	79179691	79179678	79179678	Frame_Shift_Del	A	-	p.K143fs
LIHC	TCGA-DD-A39Y-01	MORF4L1	ENST00000379535.4,ENST00000558502.1,ENST00000426013.2,ENST00000331268.5,ENST00000559345.1	chr15	79186399:79186572:79187161:79187246:79189324:79189419,	79187162	79187246	79187226	79187226	Frame_Shift_Del	T	-	p.N328fs
LIHC	TCGA-DD-A39Y-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000560943.1,ENST00000419573.3	chr15	79272998:79273041:79277348:79277546:79282530:79282615,	79277349	79277546	79277374	79277374	Frame_Shift_Del	T	-	p.K1146fs
LIHC	TCGA-DD-A39Y-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79291060:79291167:79292084:79292255:79294003:79294129,	79292085	79292255	79292126	79292126	Frame_Shift_Del	G	-	p.P918fs
LIHC	TCGA-DD-A39Y-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79292084:79292255:79294003:79294129:79296143:79296517,	79294004	79294129	79294018	79294018	Frame_Shift_Del	T	-	p.N870fs
LIHC	TCGA-DD-A39Y-01	FAH	ENST00000539156.1,ENST00000558627.1,ENST00000261755.5,ENST00000407106.1,ENST00000561421.1	chr15	80460605:80460658:80464490:80464590:80465355:80465486,	80464491	80464590	80464493	80464493	Frame_Shift_Del	T	-	p.A133fs
LIHC	TCGA-DD-A39Y-01	IL16	ENST00000302987.4,ENST00000394660.2,ENST00000360547.5,ENST00000560241.1,ENST00000559388.1,ENST00000559383.1	chr15	81561878:81561989:81565430:81565545:81571157:81571231,	81565431	81565545	81565452	81565452	Frame_Shift_Del	G	-	p.G234fs
LIHC	TCGA-DD-A39Y-01	STARD5	ENST00000325346.6,ENST00000560723.1,ENST00000302824.6	chr15	81605008:81605744:81610749:81610843:81611679:81611797,	81610750	81610843	81610813	81610813	Frame_Shift_Del	G	-	p.P144fs
LIHC	TCGA-DD-A39Y-01	AP3B2	ENST00000535359.1,ENST00000261722.3,ENST00000535348.1,ENST00000543938.1	chr15	83332552:83332727:83333118:83333242:83333586:83333695,	83333119	83333242	83333186	83333186	Frame_Shift_Del	C	-	p.E713fs
LIHC	TCGA-DD-A39Y-01	BTBD1	ENST00000559652.1	chr15	83698887:83699080:83710479:83710677:83718824:83718930,83698887:83699080:83710479:83710677:83725140:83725231,	83710480	83710677	83710521	83710521	Frame_Shift_Del	A	-	p.L274fs
LIHC	TCGA-DD-A39Y-01	BTBD1	ENST00000559652.1	chr15	83698887:83699080:83710479:83710677:83718824:83718930,83698887:83699080:83710479:83710677:83725140:83725231,	83710480	83710677	83710630	83710630	Frame_Shift_Del	T	-	p.S238fs
LIHC	TCGA-DD-A39Y-01	TM6SF1	ENST00000564988.1,ENST00000379386.4,ENST00000565982.1,ENST00000379390.6,ENST00000258909.9,ENST00000565774.1,ENST00000379384.5,ENST00000322019.9	chr15	83781548:83781652:83784596:83784694:83788329:83788433,	83784597	83784694	83784606	83784606	Frame_Shift_Del	T	-	p.V69fs
LIHC	TCGA-DD-A39Y-01	ADAMTSL3	ENST00000567476.1,ENST00000569510.1,ENST00000561483.1,ENST00000565653.1,ENST00000286744.5	chr15	84373140:84373260:84442274:84442402:84473401:84473447,	84442275	84442402	84442318	84442318	Frame_Shift_Del	G	-	p.W78fs
LIHC	TCGA-DD-A39Y-01	SEC11A	ENST00000560266.1	chr15	85213252:85213300:85223943:85224063:85230855:85231005,85213955:85214013:85223943:85224063:85234765:85234875,85213955:85214013:85223943:85224063:85230855:85230999,85223162:85223200:85223943:85224063:85230855:85231005,	85223944	85224063	85223955	85223955	Frame_Shift_Del	C	-	p.G140fs
LIHC	TCGA-DD-A39Y-01	ZNF592	ENST00000299927.3,ENST00000560079.2	chr15	85325887:85328126:85333935:85334114:85341099:85341276,	85333936	85334114	85334012	85334012	Frame_Shift_Del	C	-	p.S766fs
LIHC	TCGA-DD-A39Y-01	ZNF592	ENST00000559607.1	chr15	85325887:85328126:85333935:85334103:85341099:85341276,	85333936	85334103	85334012	85334012	Frame_Shift_Del	C	-	p.S766fs
LIHC	TCGA-DD-A39Y-01	PDE8A	ENST00000559086.1	chr15	85607600:85607657:85610244:85610435:85619092:85619149,85607600:85607657:85610244:85610435:85626786:85626875,	85610245	85610435	85610267	85610267	Frame_Shift_Del	A	-	p.E89fs
LIHC	TCGA-DD-A39Y-01	PDE8A	ENST00000310298.4,ENST00000394553.1,ENST00000557957.1	chr15	85626786:85626875:85634274:85634412:85641178:85641267,85632568:85632647:85634274:85634412:85641178:85641267,	85634275	85634412	85634360	85634360	Frame_Shift_Del	A	-	p.E267fs
LIHC	TCGA-DD-A39Y-01	PDE8A	ENST00000560789.1,ENST00000559742.1	chr15	85626786:85626875:85641178:85641267:85643245:85643297,	85641179	85641267	85641231	85641231	Frame_Shift_Del	A	-	p.Q302fs
LIHC	TCGA-DD-A39Y-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85658669:85658718:85659214:85659350:85660871:85661063,	85659215	85659350	85659320	85659320	Frame_Shift_Del	T	-	p.I502fs
LIHC	TCGA-DD-A39Y-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85659280:85659350:85660871:85661070:85664027:85664245,	85660872	85661070	85660964	85660964	Frame_Shift_Del	A	-	p.Q543fs
LIHC	TCGA-DD-A39Y-01	NTRK3	ENST00000317501.3,ENST00000540489.2	chr15	88522581:88522694:88524456:88524591:88576087:88576115,	88524457	88524591	88524481	88524481	Frame_Shift_Del	C	-	p.E566fs
LIHC	TCGA-DD-A39Y-01	NTRK3	ENST00000557856.1,ENST00000317501.3,ENST00000540489.2,ENST00000542733.2,ENST00000558676.1,ENST00000357724.2,ENST00000559188.1,ENST00000355254.2,ENST00000394480.2,ENST00000360948.2	chr15	88680691:88680792:88690565:88690634:88726648:88726720,	88690566	88690634	88690624	88690624	Frame_Shift_Del	T	-	p.S136fs
LIHC	TCGA-DD-A39Y-01	MRPS11	ENST00000325844.4,ENST00000558406.1	chr15	89011138:89012376:89015857:89015956:89018340:89018470,89011193:89011255:89015857:89015956:89018402:89018470,89011193:89011255:89015857:89015956:89018340:89018470,	89015858	89015956	89015913	89015913	Frame_Shift_Del	T	-	p.F80fs
LIHC	TCGA-DD-A39Y-01	DET1	ENST00000557842.1	chr15	89070829:89071017:89073853:89074704:89074843:89074946,	89073854	89074704	89074424	89074424	Frame_Shift_Del	A	-	p.F182fs
LIHC	TCGA-DD-A39Y-01	ISG20	ENST00000306072.5,ENST00000560741.1	chr15	89182683:89182825:89195340:89195541:89198645:89198742,	89195341	89195541	89195504	89195504	Frame_Shift_Del	G	-	p.R131fs
LIHC	TCGA-DD-A39Y-01	ISG20	ENST00000558942.1,ENST00000560573.1	chr15	89182683:89182825:89193465:89195541:89198645:89198742,	89193466	89195541	89195504	89195504	Frame_Shift_Del	G	-	p.R131fs
LIHC	TCGA-DD-A39Y-01	ISG20	ENST00000559876.1	chr15	89182683:89182825:89195400:89195541:89198645:89198742,	89195401	89195541	89195504	89195504	Frame_Shift_Del	G	-	p.R131fs
LIHC	TCGA-DD-A39Y-01	ACAN	ENST00000558704.1	chr15	89416199:89416256:89417072:89417290:89417635:89417712,	89417073	89417290	89417117	89417117	Frame_Shift_Del	G	-	p.G2460fs
LIHC	TCGA-DD-A39Y-01	ACAN	ENST00000439576.2,ENST00000561243.1,ENST00000559004.1	chr15	89416199:89416256:89417072:89417255:89417635:89417712,	89417073	89417255	89417117	89417117	Frame_Shift_Del	G	-	p.G2460fs
LIHC	TCGA-DD-A39Y-01	MFGE8	ENST00000560937.1,ENST00000566497.1,ENST00000558018.1,ENST00000542878.1,ENST00000539437.1,ENST00000268150.8	chr15	89442691:89442763:89442886:89443042:89444781:89444869,	89442887	89443042	89442991	89442991	Frame_Shift_Del	G	-	p.R300fs
LIHC	TCGA-DD-A39Y-01	MFGE8	ENST00000560937.1,ENST00000566497.1,ENST00000558018.1,ENST00000542878.1,ENST00000539437.1,ENST00000268150.8	chr15	89442691:89442763:89442886:89443042:89444781:89444869,	89442887	89443042	89443018	89443018	Frame_Shift_Del	C	-	p.V291fs
LIHC	TCGA-DD-A39Y-01	FANCI	ENST00000567891.1,ENST00000300027.8,ENST00000310775.7,ENST00000567996.1,ENST00000563250.1,ENST00000565255.1,ENST00000451393.2,ENST00000447611.2	chr15	89803943:89804074:89804815:89804972:89805051:89805078,	89804816	89804972	89804945	89804945	Frame_Shift_Del	A	-	p.K141fs
LIHC	TCGA-DD-A39Y-01	RHCG	ENST00000560081.1	chr15	90020316:90020437:90020747:90020808:90021067:90021205,	90020748	90020808	90020753	90020753	Frame_Shift_Del	T	-	p.K369fs
LIHC	TCGA-DD-A39Y-01	RHCG	ENST00000558360.1,ENST00000558030.1,ENST00000544600.1,ENST00000268122.4	chr15	90020316:90020437:90020747:90020884:90021067:90021205,	90020748	90020884	90020753	90020753	Frame_Shift_Del	T	-	p.K369fs
LIHC	TCGA-DD-A39Y-01	TICRR	ENST00000268138.7,ENST00000560985.1	chr15	90128938:90129173:90135277:90135407:90137645:90137785,	90135278	90135407	90135355	90135355	Frame_Shift_Del	T	-	p.F497fs
LIHC	TCGA-DD-A39Y-01	IDH2	ENST00000560061.1,ENST00000539790.1,ENST00000540499.2,ENST00000330062.3,ENST00000559482.1	chr15	90630343:90630495:90630670:90630807:90631590:90631734,	90630671	90630807	90630757	90630757	Frame_Shift_Del	T	-	p.K243fs
LIHC	TCGA-DD-A39Y-01	SEMA4B	ENST00000332496.6,ENST00000411539.2,ENST00000560089.1,ENST00000558065.1,ENST00000379122.3	chr15	90763024:90763123:90764213:90764325:90764598:90764624,	90764214	90764325	90764294	90764294	Frame_Shift_Del	C	-	p.D188fs
LIHC	TCGA-DD-A39Y-01	SEMA4B	ENST00000332496.6,ENST00000411539.2,ENST00000560089.1,ENST00000558065.1,ENST00000379122.3	chr15	90764598:90764712:90764845:90764997:90766790:90766972,	90764846	90764997	90764956	90764956	Frame_Shift_Del	T	-	p.F274fs
LIHC	TCGA-DD-A39Y-01	ZNF774	ENST00000379090.5	chr15	90895571:90895643:90897873:90897996:90902082:90902189,	90897874	90897996	90897914	90897914	Frame_Shift_Del	A	-	p.K8fs
LIHC	TCGA-DD-A39Y-01	IQGAP1	ENST00000560738.1,ENST00000268182.5	chr15	91035776:91035943:91037944:91038067:91040463:91040572,	91037945	91038067	91038025	91038025	Frame_Shift_Del	A	-	p.E1570fs
LIHC	TCGA-DD-A39Y-01	BLM	ENST00000355112.3,ENST00000560136.1,ENST00000559724.1,ENST00000560509.1	chr15	91312667:91312816:91326051:91326158:91328150:91328311,	91326052	91326158	91326083	91326083	Frame_Shift_Del	A	-	p.K863fs
LIHC	TCGA-DD-A39Y-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91486141:91486312:91488121:91488293:91489843:91490144,	91488122	91488293	91488127	91488127	Frame_Shift_Del	A	-	p.K331fs
LIHC	TCGA-DD-A39Y-01	PRC1	ENST00000394249.3,ENST00000442656.2,ENST00000555455.1,ENST00000361188.5,ENST00000361919.3	chr15	91513633:91513744:91517365:91517476:91517814:91517961,	91517366	91517476	91517459	91517459	Frame_Shift_Del	T	-	p.K456fs
LIHC	TCGA-DD-A39Y-01	PRC1	ENST00000560914.1,ENST00000394249.3,ENST00000442656.2,ENST00000361188.5,ENST00000559828.1,ENST00000361919.3	chr15	91517814:91517961:91519905:91520001:91522387:91522524,	91519906	91520001	91519939	91519939	Frame_Shift_Del	T	-	p.K390fs
LIHC	TCGA-DD-A39Y-01	SLCO3A1	ENST00000555210.1	chr15	92690213:92690389:92694184:92694244:92705985:92706176,	92694185	92694244	92694210	92694210	Frame_Shift_Del	T	-	p.A573fs
LIHC	TCGA-DD-A39Y-01	SLCO3A1	ENST00000424469.2,ENST00000318445.6,ENST00000555549.1	chr15	92690213:92690389:92694179:92694244:92705985:92706176,	92694180	92694244	92694210	92694210	Frame_Shift_Del	T	-	p.A573fs
LIHC	TCGA-DD-A39Y-01	SLCO3A1	ENST00000424469.2	chr15	92694184:92694244:92705985:92706228:92715009:92715077,	92705986	92706228	92706012	92706012	Frame_Shift_Del	G	-	p.G594fs
LIHC	TCGA-DD-A39Y-01	RGMA	ENST00000329082.7	chr15	93595549:93595737:93616144:93616260:93632147:93632433,	93616145	93616260	93616222	93616222	Frame_Shift_Del	C	-	p.G18fs
LIHC	TCGA-DD-A39Y-01	MCTP2	ENST00000456504.1,ENST00000357742.4	chr15	94945128:94945248:94983404:94983527:94986147:94986189,	94983405	94983527	94983495	94983495	Frame_Shift_Del	A	-	p.K726fs
LIHC	TCGA-DD-A39Y-01	MEF2A	ENST00000354410.5	chr15	100173182:100173378:100185765:100185969:100211527:100211659,100173182:100173378:100185765:100185969:100211724:100211862,	100185766	100185969	100185806	100185806	Frame_Shift_Del	C	-	p.A32fs
LIHC	TCGA-DD-A39Y-01	ALDH1A3	ENST00000329841.5,ENST00000561338.1	chr15	101427776:101427917:101432714:101432844:101433149:101433192,	101432715	101432844	101432756	101432756	Frame_Shift_Del	T	-	p.A129fs
LIHC	TCGA-DD-A39Y-01	PCSK6	ENST00000348070.1,ENST00000561109.1,ENST00000561177.1,ENST00000398185.2	chr15	101866585:101866684:101871855:101871894:101872056:101872090,	101871856	101871894	101871882	101871882	Frame_Shift_Del	G	-	p.P683fs
LIHC	TCGA-DD-A39Y-01	TARSL2	ENST00000335968.3,ENST00000558533.1,ENST00000539112.1	chr15	102201914:102202019:102211688:102211789:102211873:102211951,	102211689	102211789	102211777	102211777	Frame_Shift_Del	T	-	p.I627fs
LIHC	TCGA-DD-A39Y-01	WASH4P	ENST00000462860.1,ENST00000538848.2,ENST00000483390.2,ENST00000326592.9	chr16	66540:66738:66915:67051:67290:67427,	66916	67051	66952	66952	Frame_Shift_Del	G	-	p.P228fs
LIHC	TCGA-DD-A39Y-01	MPG	ENST00000219431.4	chr16	128255:128332:129137:129330:129423:129699,	129138	129330	129299	129299	Frame_Shift_Del	C	-	p.T3fs
LIHC	TCGA-DD-A39Y-01	PDIA2	ENST00000404312.1,ENST00000467212.1,ENST00000219406.6	chr16	335311:335437:335505:335703:336352:336473,	335506	335703	335582	335582	Frame_Shift_Del	C	-	p.A333fs
LIHC	TCGA-DD-A39Y-01	WDR90	ENST00000552943.1	chr16	703524:703670:703745:705147:705306:705468,	703746	705147	705131	705131	Frame_Shift_Del	T	-	p.F515fs
LIHC	TCGA-DD-A39Y-01	WDR90	ENST00000549091.1,ENST00000420061.2,ENST00000293879.4,ENST00000549648.1	chr16	703785:703803:705028:705147:705306:705468,	705029	705147	705131	705131	Frame_Shift_Del	T	-	p.F515fs
LIHC	TCGA-DD-A39Y-01	WDR90	ENST00000549091.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000546516.1,ENST00000552943.1	chr16	707090:707221:707761:707892:708182:708344,	707762	707892	707793	707793	Frame_Shift_Del	C	-	p.S835fs
LIHC	TCGA-DD-A39Y-01	HAGHL	ENST00000564537.1,ENST00000341413.4,ENST00000562141.1,ENST00000389703.3,ENST00000549114.1,ENST00000567414.1,ENST00000389701.5,ENST00000561546.1,ENST00000568141.1	chr16	777481:777614:777964:778029:778115:778233,	777965	778029	777984	777984	Frame_Shift_Del	G	-	p.R42fs
LIHC	TCGA-DD-A39Y-01	CHTF18	ENST00000565787.1	chr16	841160:841370:842223:842347:842438:842590,	842224	842347	842336	842336	Frame_Shift_Del	G	-	p.G634fs
LIHC	TCGA-DD-A39Y-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000569107.1,ENST00000564927.1,ENST00000564231.1,ENST00000348261.5,ENST00000562079.1	chr16	1265522:1265593:1266931:1267010:1267918:1268040,	1266932	1267010	1266934	1266934	Frame_Shift_Del	G	-	p.V1749fs
LIHC	TCGA-DD-A39Y-01	UBE2I	ENST00000568288.1	chr16	1364045:1364097:1364293:1364377:1365654:1365727,1359758:1359774:1364293:1364377:1365654:1365727,	1364294	1364377	1364314	1364314	Frame_Shift_Del	A	-	p.T29fs
LIHC	TCGA-DD-A39Y-01	UNKL	ENST00000389221.4,ENST00000502438.2,ENST00000301712.5,ENST00000508903.2,ENST00000382757.5	chr16	1449374:1449510:1451568:1451702:1453168:1453191,	1451569	1451702	1451593	1451593	Frame_Shift_Del	G	-	p.L192fs
LIHC	TCGA-DD-A39Y-01	MAPK8IP3	ENST00000561765.1,ENST00000356010.5,ENST00000250894.4,ENST00000564098.1	chr16	1774557:1774678:1779138:1779209:1779487:1779579,	1779139	1779209	1779194	1779194	Frame_Shift_Del	C	-	p.H165fs
LIHC	TCGA-DD-A39Y-01	NTHL1	ENST00000566380.1	chr16	2093567:2093727:2096128:2096367:2097709:2097744,	2096129	2096367	2096190	2096190	Frame_Shift_Del	T	-	p.K106fs
LIHC	TCGA-DD-A39Y-01	TSC2	ENST00000461648.2,ENST00000353929.4,ENST00000350773.4,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2098033:2098066:2098587:2098754:2100400:2100487,	2098588	2098754	2098593	2098593	Frame_Shift_Del	T	-	p.F4fs
LIHC	TCGA-DD-A39Y-01	TSC2	ENST00000353929.4,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2107105:2107179:2108747:2108874:2110670:2110814,	2108748	2108874	2108788	2108788	Frame_Shift_Del	T	-	p.F298fs
LIHC	TCGA-DD-A39Y-01	TSC2	ENST00000353929.4,ENST00000568566.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2114272:2114428:2115519:2115636:2120456:2120579,	2115520	2115636	2115615	2115615	Frame_Shift_Del	G	-	p.L565fs
LIHC	TCGA-DD-A39Y-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2133695:2133817:2134228:2134716:2134951:2135027,	2134229	2134716	2134294	2134294	Frame_Shift_Del	C	-	p.I1357fs
LIHC	TCGA-DD-A39Y-01	PKD1	ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2142047:2142189:2142480:2142593:2143544:2143739,2142047:2142189:2142480:2142593:2142954:2143094,	2142481	2142593	2142515	2142515	Frame_Shift_Del	C	-	p.G3745fs
LIHC	TCGA-DD-A39Y-01	PKD1	ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2143811:2144014:2144092:2144211:2147148:2147242,	2144093	2144211	2144208	2144208	Frame_Shift_Del	G	-	p.S3502fs
LIHC	TCGA-DD-A39Y-01	MLST8	ENST00000564088.1,ENST00000562352.1,ENST00000562479.1,ENST00000570224.1,ENST00000563067.1,ENST00000397124.1,ENST00000569848.1,ENST00000564319.1,ENST00000301724.10,ENST00000569457.1,ENST00000566835.1,ENST00000565250.1,ENST00000301725.7,ENST00000567282.1,ENST00000568194.1,ENST00000569417.1,ENST00000565330.1,ENST00000561651.1,ENST00000568542.1,ENST00000382450.4,ENST00000562851.1	chr16	2256555:2256660:2257035:2257111:2257197:2257298,2256555:2256660:2257035:2257111:2257193:2257251,	2257036	2257111	2257079	2257079	Frame_Shift_Del	C	-	p.P130fs
LIHC	TCGA-DD-A39Y-01	RNPS1	ENST00000567147.1,ENST00000570051.1,ENST00000566458.1	chr16	2313260:2313288:2314176:2314332:2318055:2318072,	2314177	2314332	2314308	2314308	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-DD-A39Y-01	KCTD5	ENST00000301738.4	chr16	2745935:2746044:2747906:2747998:2749821:2749917,	2747907	2747998	2747927	2747927	Frame_Shift_Del	T	-	p.F128fs
LIHC	TCGA-DD-A39Y-01	SRRM2	ENST00000576894.1,ENST00000575701.1	chr16	2802716:2802855:2806334:2806607:2807472:2807575,2802714:2802847:2806334:2806607:2807472:2807575,	2806335	2806607	2806520	2806520	Frame_Shift_Del	G	-	p.R52fs
LIHC	TCGA-DD-A39Y-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983149:2983583:2983716:2983980:2987121:2987271,	2983717	2983980	2983745	2983745	Frame_Shift_Del	G	-	p.L426fs
LIHC	TCGA-DD-A39Y-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983802:2983980:2987121:2987385:2988184:2988457,	2987122	2987385	2987145	2987145	Frame_Shift_Del	C	-	p.P562fs
LIHC	TCGA-DD-A39Y-01	FLYWCH1	ENST00000399667.2,ENST00000570752.1,ENST00000574985.1,ENST00000573564.1,ENST00000253928.9,ENST00000416288.2,ENST00000344592.5	chr16	2987121:2987385:2988184:2988457:2990032:2990093,	2988185	2988457	2988222	2988222	Frame_Shift_Del	G	-	p.L654fs
LIHC	TCGA-DD-A39Y-01	ZNF263	ENST00000219069.5	chr16	3333954:3334205:3338453:3338570:3339392:3339690,3336022:3336149:3338453:3338570:3339392:3339835,	3338454	3338570	3338560	3338560	Frame_Shift_Del	C	-	p.G292fs
LIHC	TCGA-DD-A39Y-01	ZNF75A	ENST00000572999.1,ENST00000574298.1	chr16	3362676:3362768:3363048:3363175:3366911:3366924,	3363049	3363175	3363147	3363147	Frame_Shift_Del	G	-	p.Q24fs
LIHC	TCGA-DD-A39Y-01	ZSCAN32	ENST00000576500.1	chr16	3433670:3433711:3434458:3434941:3440009:3440133,3433670:3433711:3434458:3434941:3447191:3447194,	3434459	3434941	3434579	3434579	Frame_Shift_Del	C	-	p.E372fs
LIHC	TCGA-DD-A39Y-01	ZSCAN32	ENST00000422427.2	chr16	3434839:3434941:3440009:3440183:3440422:3440517,3434839:3434941:3440009:3440183:3443648:3443814,	3440010	3440183	3440037	3440037	Frame_Shift_Del	G	-	p.Q242fs
LIHC	TCGA-DD-A39Y-01	ZSCAN32	ENST00000571906.1,ENST00000573327.1,ENST00000396852.4,ENST00000574940.1,ENST00000396846.3	chr16	3434839:3434941:3440009:3440133:3440422:3440517,	3440010	3440133	3440037	3440037	Frame_Shift_Del	G	-	p.Q242fs
LIHC	TCGA-DD-A39Y-01	TRAP1	ENST00000571538.1,ENST00000571804.1,ENST00000538171.1,ENST00000246957.5	chr16	3729735:3729791:3735996:3736137:3739055:3739076,	3735997	3736137	3736090	3736090	Frame_Shift_Del	T	-	p.K126fs
LIHC	TCGA-DD-A39Y-01	CREBBP	ENST00000571763.1,ENST00000576720.1,ENST00000262367.5,ENST00000382070.3	chr16	3781911:3781938:3786036:3786204:3786650:3786816,	3786037	3786204	3786071	3786071	Frame_Shift_Del	T	-	p.K1565fs
LIHC	TCGA-DD-A39Y-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3820570:3820987:3823751:3823931:3824569:3824694,	3823752	3823931	3823862	3823862	Frame_Shift_Del	C	-	p.A785fs
LIHC	TCGA-DD-A39Y-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3843386:3843627:3860603:3860780:3900297:3901010,	3860604	3860780	3860693	3860693	Frame_Shift_Del	G	-	p.Q296fs
LIHC	TCGA-DD-A39Y-01	CDIP1	ENST00000562579.1,ENST00000399599.3,ENST00000586728.1,ENST00000562334.1,ENST00000563332.2,ENST00000563507.1,ENST00000567695.1,ENST00000589159.1	chr16	4563816:4563852:4564046:4564145:4564575:4564631,	4564047	4564145	4564112	4564112	Frame_Shift_Del	G	-	p.P8fs
LIHC	TCGA-DD-A39Y-01	MGRN1	ENST00000399577.5,ENST00000536343.1,ENST00000415496.1,ENST00000586183.1,ENST00000585676.1,ENST00000592256.1,ENST00000262370.7,ENST00000587747.1,ENST00000588994.1	chr16	4731550:4731777:4732823:4732947:4733224:4733270,	4732824	4732947	4732844	4732844	Frame_Shift_Del	C	-	p.S460fs
LIHC	TCGA-DD-A39Y-01	MGRN1	ENST00000399577.5,ENST00000536343.1,ENST00000415496.1,ENST00000586183.1,ENST00000585676.1,ENST00000592256.1,ENST00000262370.7,ENST00000587747.1,ENST00000588994.1	chr16	4731550:4731777:4732823:4732947:4733224:4733270,	4732824	4732947	4732897	4732897	Frame_Shift_Del	C	-	p.P479fs
LIHC	TCGA-DD-A39Y-01	ANKS3	ENST00000591185.1,ENST00000592077.1,ENST00000585773.1,ENST00000589035.1,ENST00000590803.1,ENST00000590193.1,ENST00000446014.2,ENST00000304283.4,ENST00000591653.1,ENST00000588513.1	chr16	4747353:4747417:4747977:4748063:4748427:4748600,	4747978	4748063	4748013	4748013	Frame_Shift_Del	C	-	p.G592fs
LIHC	TCGA-DD-A39Y-01	ANKS3	ENST00000585773.1	chr16	4776659:4776781:4776979:4777178:4779980:4780152,4774825:4774832:4776979:4777178:4779980:4780152,4776659:4776781:4776979:4777178:4784156:4784193,	4776980	4777178	4777050	4777050	Frame_Shift_Del	G	-	p.P100fs
LIHC	TCGA-DD-A39Y-01	C16orf71	ENST00000299320.5,ENST00000590191.1	chr16	4796927:4797026:4797343:4797635:4798725:4799396,	4797344	4797635	4797483	4797483	Frame_Shift_Del	G	-	p.G474fs
LIHC	TCGA-DD-A39Y-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000589389.1,ENST00000321919.9,ENST00000586901.1,ENST00000591451.1	chr16	4873821:4873908:4881979:4882222:4882774:4882913,	4881980	4882222	4882115	4882115	Frame_Shift_Del	C	-	p.G134fs
LIHC	TCGA-DD-A39Y-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944512	4944512	Frame_Shift_Del	A	-	p.F450fs
LIHC	TCGA-DD-A39Y-01	NAGPA	ENST00000562746.1,ENST00000312251.3,ENST00000568202.1	chr16	5077135:5077199:5077278:5077380:5077846:5077894,	5077279	5077380	5077358	5077358	Frame_Shift_Del	C	-	p.G399fs
LIHC	TCGA-DD-A39Y-01	C16orf89	ENST00000315997.5,ENST00000422873.1,ENST00000350219.4,ENST00000472572.3,ENST00000592343.1	chr16	5105246:5105351:5106053:5106189:5108493:5108611,	5106054	5106189	5106184	5106184	Frame_Shift_Del	C	-	p.G211fs
LIHC	TCGA-DD-A39Y-01	METTL22	ENST00000163678.7	chr16	8722901:8722967:8729024:8729169:8732947:8733019,	8729025	8729169	8729032	8729032	Frame_Shift_Del	G	-	p.R188fs
LIHC	TCGA-DD-A39Y-01	PMM2	ENST00000569958.1	chr16	8895655:8895767:8905498:8905570:8906847:8906924,	8905499	8905570	8905548	8905548	Frame_Shift_Del	A	-	p.G167fs
LIHC	TCGA-DD-A39Y-01	PMM2	ENST00000570076.1	chr16	8900172:8900264:8905494:8905570:8906847:8906924,8895655:8895767:8905494:8905570:8906847:8906924,	8905495	8905570	8905548	8905548	Frame_Shift_Del	A	-	p.G167fs
LIHC	TCGA-DD-A39Y-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551290	10551290	Frame_Shift_Del	A	-	p.E419fs
LIHC	TCGA-DD-A39Y-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551340	10551340	Frame_Shift_Del	A	-	p.K437fs
LIHC	TCGA-DD-A39Y-01	NUBP1	ENST00000433392.2	chr16	10846466:10846535:10850546:10850637:10851729:10851851,	10850547	10850637	10850564	10850564	Frame_Shift_Del	G	-	p.L126fs
LIHC	TCGA-DD-A39Y-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001500	11001500	Frame_Shift_Del	G	-	p.L717fs
LIHC	TCGA-DD-A39Y-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001500	11001500	Frame_Shift_Del	G	-	p.L717fs
LIHC	TCGA-DD-A39Y-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001510	11001510	Frame_Shift_Del	T	-	p.W721fs
LIHC	TCGA-DD-A39Y-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001510	11001510	Frame_Shift_Del	T	-	p.W721fs
LIHC	TCGA-DD-A39Y-01	CIITA	ENST00000381835.5	chr16	10998600:10998669:11002839:11003044:11004044:11004100,	11002840	11003044	11002935	11002935	Frame_Shift_Del	G	-	p.G903fs
LIHC	TCGA-DD-A39Y-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11002935	11002935	Frame_Shift_Del	G	-	p.G903fs
LIHC	TCGA-DD-A39Y-01	TXNDC11	ENST00000570917.1,ENST00000283033.5,ENST00000356957.3	chr16	11772938:11773693:11778020:11778101:11781712:11781822,	11778021	11778101	11778032	11778032	Frame_Shift_Del	A	-	p.F768fs
LIHC	TCGA-DD-A39Y-01	TXNDC11	ENST00000283033.5,ENST00000356957.3	chr16	11782158:11782301:11785145:11785938:11791980:11792181,	11785146	11785938	11785409	11785409	Frame_Shift_Del	G	-	p.P573fs
LIHC	TCGA-DD-A39Y-01	TXNDC11	ENST00000283033.5,ENST00000356957.3	chr16	11815432:11815526:11824500:11824630:11827837:11827855,	11824501	11824630	11824590	11824590	Frame_Shift_Del	A	-	p.Y204fs
LIHC	TCGA-DD-A39Y-01	ZC3H7A	ENST00000571198.1,ENST00000355758.4,ENST00000396516.2	chr16	11852286:11852395:11855261:11855367:11855765:11855899,	11855262	11855367	11855319	11855319	Frame_Shift_Del	C	-	p.K755fs
LIHC	TCGA-DD-A39Y-01	RSL1D1	ENST00000542106.1,ENST00000396503.3	chr16	11940590:11940700:11941524:11941663:11944135:11944270,11940590:11940700:11941524:11941663:11945264:11945365,	11941525	11941663	11941569	11941569	Frame_Shift_Del	A	-	p.Y114fs
LIHC	TCGA-DD-A39Y-01	GSPT1	ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11966975:11967028:11969617:11969786:11971263:11971437,11966975:11967028:11969617:11969786:11969942:11970032,	11969618	11969786	11969760	11969760	Frame_Shift_Del	T	-	p.K573fs
LIHC	TCGA-DD-A39Y-01	GSPT1	ENST00000565267.1,ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11980633:11980788:11981426:11981607:11984918:11984996,	11981427	11981607	11981555	11981555	Frame_Shift_Del	T	-	p.T277fs
LIHC	TCGA-DD-A39Y-01	GSPT1	ENST00000565267.1,ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11980633:11980788:11981426:11981607:11984918:11984996,	11981427	11981607	11981559	11981559	Frame_Shift_Del	A	-	p.G275fs
LIHC	TCGA-DD-A39Y-01	PARN	ENST00000437198.2,ENST00000341484.7,ENST00000539279.1,ENST00000420015.2	chr16	14530524:14530629:14540744:14540938:14576494:14576684,	14540745	14540938	14540772	14540772	Frame_Shift_Del	T	-	p.R613fs
LIHC	TCGA-DD-A39Y-01	PARN	ENST00000437198.2,ENST00000341484.7,ENST00000539279.1,ENST00000569444.1,ENST00000420015.2	chr16	14678605:14678648:14680174:14680218:14687157:14687235,	14680175	14680218	14680181	14680181	Frame_Shift_Del	A	-	p.F319fs
LIHC	TCGA-DD-A39Y-01	PARN	ENST00000563641.1,ENST00000437198.2,ENST00000341484.7,ENST00000420015.2	chr16	14693791:14693817:14698002:14698083:14700340:14700383,	14698003	14698083	14698009	14698009	Frame_Shift_Del	T	-	p.K259fs
LIHC	TCGA-DD-A39Y-01	NOMO1	ENST00000287667.7,ENST00000566883.1,ENST00000566917.1	chr16	14947793:14947883:14951073:14951179:14951361:14951408,	14951074	14951179	14951176	14951176	Frame_Shift_Del	A	-	p.K356fs
LIHC	TCGA-DD-A39Y-01	PDXDC1	ENST00000563679.1,ENST00000450288.2,ENST00000535621.2,ENST00000565362.1,ENST00000569715.1,ENST00000325823.7,ENST00000570001.1,ENST00000396410.4	chr16	15092199:15092262:15100250:15100440:15102635:15102697,15098043:15098190:15100250:15100440:15102635:15102697,	15100251	15100440	15100286	15100286	Frame_Shift_Del	A	-	p.E142fs
LIHC	TCGA-DD-A39Y-01	NTAN1	ENST00000567420.1	chr16	15141711:15141777:15141853:15141956:15149597:15149644,	15141854	15141956	15141908	15141908	Frame_Shift_Del	G	-	p.Q44fs
LIHC	TCGA-DD-A39Y-01	RRN3	ENST00000540462.1,ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1	chr16	15163926:15164111:15164977:15165108:15166806:15166937,	15164978	15165108	15165070	15165070	Frame_Shift_Del	T	-	p.K389fs
LIHC	TCGA-DD-A39Y-01	RRN3	ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1,ENST00000564131.1	chr16	15173854:15173953:15177369:15177439:15178498:15178562,	15177370	15177439	15177385	15177385	Frame_Shift_Del	T	-	p.K217fs
LIHC	TCGA-DD-A39Y-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15826420:15826565:15829222:15829435:15831305:15831477,	15829223	15829435	15829274	15829274	Frame_Shift_Del	T	-	p.K1152fs
LIHC	TCGA-DD-A39Y-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15831305:15831477:15832421:15832545:15833907:15834045,	15832422	15832545	15832454	15832454	Frame_Shift_Del	T	-	p.N1030fs
LIHC	TCGA-DD-A39Y-01	MYH11	ENST00000570785.1,ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15850197:15850371:15851683:15851857:15853432:15853585,	15851684	15851857	15851726	15851726	Frame_Shift_Del	A	-	p.F511fs
LIHC	TCGA-DD-A39Y-01	MYH11	ENST00000576790.2,ENST00000300036.5	chr16	15872636:15872700:15876241:15876334:15880486:15880589,	15876242	15876334	15876271	15876271	Frame_Shift_Del	T	-	p.T233fs
LIHC	TCGA-DD-A39Y-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978038	15978038	Frame_Shift_Del	T	-	p.K18fs
LIHC	TCGA-DD-A39Y-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000574224.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16139692:16139870:16141998:16142160:16146580:16146673,	16141999	16142160	16142120	16142120	Frame_Shift_Del	C	-	p.A447fs
LIHC	TCGA-DD-A39Y-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16146580:16146673:16149948:16150152:16162012:16162159,	16149949	16150152	16149995	16149995	Frame_Shift_Del	A	-	p.E507fs
LIHC	TCGA-DD-A39Y-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000574761.1,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16205231:16205439:16208622:16208933:16215831:16215960,	16208623	16208933	16208661	16208661	Frame_Shift_Del	G	-	p.G1051fs
LIHC	TCGA-DD-A39Y-01	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2	chr16	16280980:16281068:16282687:16282831:16284020:16284224,	16282688	16282831	16282743	16282743	Frame_Shift_Del	T	-	p.N575fs
LIHC	TCGA-DD-A39Y-01	XYLT1	ENST00000261381.6	chr16	17195625:17202874:17211502:17211836:17221522:17221718,	17211503	17211836	17211787	17211787	Frame_Shift_Del	C	-	p.G758fs
LIHC	TCGA-DD-A39Y-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18840607:18841077:18841247:18841437:18841540:18841691,	18841248	18841437	18841357	18841357	Frame_Shift_Del	A	-	p.F3008fs
LIHC	TCGA-DD-A39Y-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18849872:18850011:18851019:18851268:18852886:18853116,	18851020	18851268	18851223	18851223	Frame_Shift_Del	G	-	p.R2248fs
LIHC	TCGA-DD-A39Y-01	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19046997:19047145:19049195:19049369:19051610:19051768,	19049196	19049369	19049319	19049319	Frame_Shift_Del	T	-	p.F267fs
LIHC	TCGA-DD-A39Y-01	SYT17	ENST00000562034.1,ENST00000562711.2,ENST00000355377.2,ENST00000568115.1	chr16	19191712:19191861:19194849:19195469:19234366:19234487,	19194850	19195469	19194993	19194993	Frame_Shift_Del	C	-	p.P98fs
LIHC	TCGA-DD-A39Y-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19492691:19492787:19498266:19498342:19498514:19498648,	19498267	19498342	19498285	19498285	Frame_Shift_Del	C	-	p.C794fs
LIHC	TCGA-DD-A39Y-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547454	19547454	Frame_Shift_Del	A	-	p.K155fs
LIHC	TCGA-DD-A39Y-01	ACSM2A	ENST00000575558.1,ENST00000417235.2	chr16	20471428:20471613:20476838:20477049:20480833:20480867,20462932:20463003:20476838:20477049:20480833:20480867,	20476839	20477049	20476852	20476852	Frame_Shift_Del	T	-	p.L64fs
LIHC	TCGA-DD-A39Y-01	ACSM2B	ENST00000565232.1,ENST00000569327.1,ENST00000329697.6,ENST00000569364.1,ENST00000414188.2,ENST00000567001.1	chr16	20566764:20566798:20570558:20570769:20575990:20576175,	20570559	20570769	20570573	20570573	Frame_Shift_Del	C	-	p.G125fs
LIHC	TCGA-DD-A39Y-01	ACSM2B	ENST00000565232.1,ENST00000569327.1,ENST00000329697.6,ENST00000569364.1,ENST00000414188.2,ENST00000567001.1	chr16	20566764:20566798:20570558:20570769:20575990:20576175,	20570559	20570769	20570604	20570604	Frame_Shift_Del	G	-	p.R115fs
LIHC	TCGA-DD-A39Y-01	ZP2	ENST00000574091.1,ENST00000574002.1,ENST00000219593.4	chr16	21210099:21210183:21210890:21210987:21211063:21211199,	21210891	21210987	21210944	21210944	Frame_Shift_Del	G	-	p.P625fs
LIHC	TCGA-DD-A39Y-01	METTL9	ENST00000567404.1	chr16	21610912:21611219:21623965:21624156:21629185:21629330,21611038:21611149:21623965:21624156:21629185:21629330,21608542:21608621:21623965:21624156:21629185:21629330,	21623966	21624156	21624120	21624120	Frame_Shift_Del	T	-	p.V107fs
LIHC	TCGA-DD-A39Y-01	METTL9	ENST00000567404.1,ENST00000396014.4,ENST00000358154.3,ENST00000562961.1	chr16	21610912:21611219:21629185:21629395:21636251:21636435,21624020:21624156:21629185:21629395:21636251:21636435,	21629186	21629395	21629327	21629327	Frame_Shift_Del	T	-	p.H166fs
LIHC	TCGA-DD-A39Y-01	METTL9	ENST00000567404.1,ENST00000396014.4,ENST00000358154.3,ENST00000562961.1	chr16	21610912:21611219:21629185:21629395:21636251:21636435,21624020:21624156:21629185:21629395:21636251:21636435,	21629186	21629395	21629382	21629382	Frame_Shift_Del	A	-	p.K187fs
LIHC	TCGA-DD-A39Y-01	UQCRC2	ENST00000268379.4,ENST00000561553.1,ENST00000563898.1,ENST00000563711.1	chr16	21976728:21976826:21979948:21980006:21982845:21982941,	21979949	21980006	21979987	21979987	Frame_Shift_Del	A	-	p.R217fs
LIHC	TCGA-DD-A39Y-01	VWA3A	ENST00000299840.6,ENST00000566668.1,ENST00000389397.4,ENST00000389398.5	chr16	22134405:22134486:22134933:22135028:22137498:22137618,	22134934	22135028	22134990	22134990	Frame_Shift_Del	G	-	p.L498fs
LIHC	TCGA-DD-A39Y-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000389398.5	chr16	22153988:22154086:22155567:22155705:22157556:22157665,	22155568	22155705	22155589	22155589	Frame_Shift_Del	A	-	p.K873fs
LIHC	TCGA-DD-A39Y-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000389398.5	chr16	22153988:22154086:22155567:22155705:22157556:22157665,	22155568	22155705	22155641	22155641	Frame_Shift_Del	A	-	p.Q889fs
LIHC	TCGA-DD-A39Y-01	ERN2	ENST00000256797.4	chr16	23711859:23712025:23712279:23712435:23713472:23713594,	23712280	23712435	23712378	23712378	Frame_Shift_Del	T	-	p.T469fs
LIHC	TCGA-DD-A39Y-01	ERN2	ENST00000562562.1	chr16	23707214:23707299:23711859:23712435:23713472:23713594,	23711860	23712435	23712378	23712378	Frame_Shift_Del	T	-	p.T469fs
LIHC	TCGA-DD-A39Y-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24762046:24762134:24769659:24769681:24788253:24788348,	24769660	24769681	24769670	24769670	Frame_Shift_Del	A	-	p.Q51fs
LIHC	TCGA-DD-A39Y-01	AQP8	ENST00000219660.5,ENST00000566125.1	chr16	25232777:25232904:25235682:25235897:25238388:25238523,	25235683	25235897	25235728	25235728	Frame_Shift_Del	T	-	p.F145fs
LIHC	TCGA-DD-A39Y-01	KDM8	ENST00000441782.2,ENST00000286096.4	chr16	27221902:27221942:27224905:27225072:27226196:27226329,	27224906	27225072	27224949	27224949	Frame_Shift_Del	A	-	p.E181fs
LIHC	TCGA-DD-A39Y-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000562408.1	chr16	28124224:28124371:28132990:28133083:28137009:28137169,28128638:28128783:28132990:28133083:28137009:28137169,	28132991	28133083	28133072	28133072	Frame_Shift_Del	A	-	p.V593fs
LIHC	TCGA-DD-A39Y-01	XPO6	ENST00000304658.5,ENST00000574435.1,ENST00000565698.1	chr16	28157492:28157524:28163979:28164106:28167394:28167438,	28163980	28164106	28164026	28164026	Frame_Shift_Del	G	-	p.P393fs
LIHC	TCGA-DD-A39Y-01	XPO6	ENST00000565698.1	chr16	28188540:28188653:28192261:28192352:28222686:28222797,28188540:28188653:28192261:28192352:28220307:28220376,	28192262	28192352	28192272	28192272	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-DD-A39Y-01	XPO6	ENST00000565698.1	chr16	28188540:28188653:28192261:28192352:28222686:28222797,28188540:28188653:28192261:28192352:28220307:28220376,	28192262	28192352	28192299	28192299	Frame_Shift_Del	A	-	p.F19fs
LIHC	TCGA-DD-A39Y-01	SULT1A2	ENST00000533150.1	chr16	28603583:28603802:28606687:28606996:28607103:28607255,	28606688	28606996	28606767	28606767	Frame_Shift_Del	T	-	p.K126fs
LIHC	TCGA-DD-A39Y-01	SULT1A2	ENST00000335715.4	chr16	28606870:28606996:28607103:28607255:28608317:28608430,	28607104	28607255	28607200	28607200	Frame_Shift_Del	C	-	p.V18fs
LIHC	TCGA-DD-A39Y-01	SH2B1	ENST00000545570.1,ENST00000359285.5	chr16	28883660:28883722:28883854:28884079:28884490:28884590,	28883855	28884079	28884047	28884047	Frame_Shift_Del	G	-	p.G640fs
LIHC	TCGA-DD-A39Y-01	SPNS1	ENST00000566059.1,ENST00000323081.8,ENST00000565975.1,ENST00000564476.1,ENST00000334536.8,ENST00000311008.11,ENST00000568388.1,ENST00000567771.1,ENST00000568900.1	chr16	28986518:28986713:28986812:28986878:28989228:28989365,	28986813	28986878	28986848	28986848	Frame_Shift_Del	G	-	p.G93fs
LIHC	TCGA-DD-A39Y-01	MVP	ENST00000357402.5,ENST00000395353.1	chr16	29852916:29853161:29853235:29853433:29855813:29856200,	29853236	29853433	29853331	29853331	Frame_Shift_Del	G	-	p.R512fs
LIHC	TCGA-DD-A39Y-01	KCTD13	ENST00000308768.5	chr16	29916332:29916472:29917813:29918429:29922298:29922494,	29917814	29918429	29918366	29918366	Frame_Shift_Del	G	-	p.R273fs
LIHC	TCGA-DD-A39Y-01	KCTD13	ENST00000563264.1,ENST00000566842.1,ENST00000308768.5,ENST00000568995.1,ENST00000568000.1	chr16	29923135:29923188:29923280:29923370:29934510:29934558,	29923281	29923370	29923364	29923364	Frame_Shift_Del	T	-	p.R141fs
LIHC	TCGA-DD-A39Y-01	TMEM219	ENST00000279396.6,ENST00000566848.1,ENST00000414689.2	chr16	29979345:29979575:29982728:29982899:29984270:29984339,	29982729	29982899	29982835	29982835	Frame_Shift_Del	G	-	p.R231fs
LIHC	TCGA-DD-A39Y-01	HIRIP3	ENST00000279392.3	chr16	30004969:30005129:30005226:30006164:30006423:30006538,	30005227	30006164	30005689	30005689	Frame_Shift_Del	G	-	p.P259fs
LIHC	TCGA-DD-A39Y-01	INO80E	ENST00000304516.7	chr16	30012078:30012157:30012249:30012361:30012734:30012851,30012078:30012157:30012249:30012361:30016541:30016644,	30012250	30012361	30012335	30012335	Frame_Shift_Del	G	-	p.G124fs
LIHC	TCGA-DD-A39Y-01	INO80E	ENST00000563197.1	chr16	30012314:30012361:30012734:30012851:30016688:30016756,30012328:30012361:30012734:30012851:30016541:30016644,	30012735	30012851	30012808	30012808	Frame_Shift_Del	G	-	p.R157fs
LIHC	TCGA-DD-A39Y-01	INO80E	ENST00000567705.1	chr16	30012314:30012361:30012785:30012851:30016541:30016644,	30012786	30012851	30012808	30012808	Frame_Shift_Del	G	-	p.R157fs
LIHC	TCGA-DD-A39Y-01	INO80E	ENST00000567065.1	chr16	30012291:30012361:30012532:30012851:30015888:30015978,30012328:30012361:30012532:30012851:30016541:30016644,	30012533	30012851	30012808	30012808	Frame_Shift_Del	G	-	p.R157fs
LIHC	TCGA-DD-A39Y-01	INO80E	ENST00000569957.1	chr16	30012328:30012361:30012532:30015978:30016541:30016644,	30012533	30015978	30012808	30012808	Frame_Shift_Del	G	-	p.R157fs
LIHC	TCGA-DD-A39Y-01	CORO1A	ENST00000219150.5,ENST00000568763.1,ENST00000570045.1	chr16	30199512:30199570:30199681:30199897:30200180:30200194,	30199682	30199897	30199756	30199756	Frame_Shift_Del	G	-	p.L380fs
LIHC	TCGA-DD-A39Y-01	CD2BP2	ENST00000569466.1,ENST00000305596.3	chr16	30365221:30365379:30365504:30365643:30365924:30366028,	30365505	30365643	30365545	30365545	Frame_Shift_Del	C	-	p.G59fs
LIHC	TCGA-DD-A39Y-01	ITGAL	ENST00000454514.2,ENST00000562857.1,ENST00000565864.1,ENST00000356798.6,ENST00000569725.1	chr16	30486626:30486721:30486833:30486901:30490411:30490495,	30486834	30486901	30486897	30486897	Frame_Shift_Del	T	-	p.I108fs
LIHC	TCGA-DD-A39Y-01	ITGAL	ENST00000563615.1,ENST00000358164.5,ENST00000356798.6	chr16	30516709:30516783:30518035:30518177:30521681:30521716,	30518036	30518177	30518138	30518138	Frame_Shift_Del	C	-	p.F823fs
LIHC	TCGA-DD-A39Y-01	SRCAP	ENST00000483083.1,ENST00000262518.4	chr16	30733445:30733607:30733883:30734069:30734283:30734550,	30733884	30734069	30733910	30733910	Frame_Shift_Del	G	-	p.G1246fs
LIHC	TCGA-DD-A39Y-01	SRCAP	ENST00000483083.1,ENST00000262518.4	chr16	30733445:30733607:30733883:30734069:30734283:30734550,	30733884	30734069	30733979	30733979	Frame_Shift_Del	G	-	p.G1268fs
LIHC	TCGA-DD-A39Y-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30735241	30735241	Frame_Shift_Del	C	-	p.S1499fs
LIHC	TCGA-DD-A39Y-01	RNF40	ENST00000566703.1,ENST00000324685.6,ENST00000493683.1	chr16	30776745:30776820:30777483:30777603:30777699:30777879,	30777484	30777603	30777512	30777512	Frame_Shift_Del	A	-	p.E341fs
LIHC	TCGA-DD-A39Y-01	SETD1A	ENST00000262519.8	chr16	30976921:30977707:30978204:30978381:30978821:30978909,	30978205	30978381	30978284	30978284	Frame_Shift_Del	C	-	p.S862fs
LIHC	TCGA-DD-A39Y-01	STX4	ENST00000487411.1,ENST00000496977.1,ENST00000313843.3,ENST00000394998.1,ENST00000493902.1	chr16	31049246:31049355:31049434:31049511:31049830:31049968,	31049435	31049511	31049466	31049466	Frame_Shift_Del	G	-	p.L171fs
LIHC	TCGA-DD-A39Y-01	FUS	ENST00000487509.2,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31195181:31195323:31195529:31195717:31196259:31196500,	31195530	31195717	31195576	31195576	Frame_Shift_Del	G	-	p.G128fs
LIHC	TCGA-DD-A39Y-01	FUS	ENST00000568685.1	chr16	31199645:31199678:31200440:31200547:31200985:31201016,	31200441	31200547	31200487	31200487	Frame_Shift_Del	G	-	p.L292fs
LIHC	TCGA-DD-A39Y-01	FUS	ENST00000487509.2,ENST00000474990.1,ENST00000380244.3,ENST00000254108.7,ENST00000568901.2,ENST00000566605.1	chr16	31199645:31199678:31200443:31200547:31200985:31201016,	31200444	31200547	31200487	31200487	Frame_Shift_Del	G	-	p.L292fs
LIHC	TCGA-DD-A39Y-01	FUS	ENST00000487509.2,ENST00000474990.1,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31200985:31201115:31201360:31201462:31201595:31201719,	31201361	31201462	31201396	31201396	Frame_Shift_Del	T	-	p.F368fs
LIHC	TCGA-DD-A39Y-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31282274:31282405:31283167:31283313:31284685:31284839,	31283168	31283313	31283222	31283222	Frame_Shift_Del	T	-	p.F205fs
LIHC	TCGA-DD-A39Y-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31340548:31340624:31341118:31341226:31341401:31341485,	31341119	31341226	31341205	31341205	Frame_Shift_Del	C	-	p.R986fs
LIHC	TCGA-DD-A39Y-01	ITGAD	ENST00000389202.2	chr16	31435422:31435524:31435787:31435898:31437335:31437826,	31435788	31435898	31435853	31435853	Frame_Shift_Del	G	-	p.V1109fs
LIHC	TCGA-DD-A39Y-01	TGFB1I1	ENST00000564176.1	chr16	31484761:31484877:31485002:31485298:31485472:31485560,	31485003	31485298	31485238	31485238	Frame_Shift_Del	G	-	p.G89fs
LIHC	TCGA-DD-A39Y-01	TGFB1I1	ENST00000568142.2,ENST00000394863.3,ENST00000569254.1,ENST00000569703.1,ENST00000567066.2,ENST00000565454.1,ENST00000361773.3,ENST00000394858.2,ENST00000567607.1	chr16	31484761:31484877:31485155:31485298:31485472:31485560,31485002:31485055:31485155:31485298:31485472:31485560,	31485156	31485298	31485238	31485238	Frame_Shift_Del	G	-	p.G89fs
LIHC	TCGA-DD-A39Y-01	SLC5A2	ENST00000330498.3,ENST00000419665.2	chr16	31497490:31497596:31498640:31498721:31498850:31499080,	31498641	31498721	31498680	31498680	Frame_Shift_Del	C	-	p.T205fs
LIHC	TCGA-DD-A39Y-01	SLC5A2	ENST00000568188.1	chr16	31499358:31499494:31499703:31500369:31500443:31500659,	31499704	31500369	31500236	31500236	Frame_Shift_Del	C	-	p.A439fs
LIHC	TCGA-DD-A39Y-01	SLC5A2	ENST00000330498.3	chr16	31500012:31500093:31500200:31500369:31500443:31500659,	31500201	31500369	31500236	31500236	Frame_Shift_Del	C	-	p.A439fs
LIHC	TCGA-DD-A39Y-01	SHCBP1	ENST00000566016.1	chr16	46651545:46651661:46652116:46652284:46655168:46655263,	46652117	46652284	46652176	46652176	Frame_Shift_Del	A	-	p.F71fs
LIHC	TCGA-DD-A39Y-01	VPS35	ENST00000568784.2,ENST00000562420.1,ENST00000299138.7	chr16	46696154:46696394:46696894:46697074:46702841:46702964,	46696895	46697074	46696929	46696929	Frame_Shift_Del	T	-	p.N598fs
LIHC	TCGA-DD-A39Y-01	VPS35	ENST00000568784.2,ENST00000562420.1,ENST00000299138.7	chr16	46696154:46696394:46696894:46697074:46702841:46702964,	46696895	46697074	46697038	46697038	Frame_Shift_Del	A	-	p.S562fs
LIHC	TCGA-DD-A39Y-01	ORC6	ENST00000219097.2,ENST00000563599.1,ENST00000566860.1	chr16	46727004:46727094:46729473:46729586:46729928:46729997,	46729474	46729586	46729525	46729525	Frame_Shift_Del	A	-	p.V118fs
LIHC	TCGA-DD-A39Y-01	GPT2	ENST00000440783.2,ENST00000562801.1,ENST00000340124.4	chr16	46956153:46956328:46958300:46958456:46960836:46960949,	46958301	46958456	46958396	46958396	Frame_Shift_Del	G	-	p.Q336fs
LIHC	TCGA-DD-A39Y-01	PHKB	ENST00000323584.5,ENST00000299167.8,ENST00000455779.1,ENST00000566044.1	chr16	47627410:47627468:47628047:47628125:47630283:47630442,	47628048	47628125	47628093	47628093	Frame_Shift_Del	T	-	p.L385fs
LIHC	TCGA-DD-A39Y-01	ABCC11	ENST00000353782.5,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48209168:48209328:48210834:48211024:48212507:48212597,	48210835	48211024	48210976	48210976	Frame_Shift_Del	G	-	p.Q1133fs
LIHC	TCGA-DD-A39Y-01	LONP2	ENST00000285737.4,ENST00000535754.1,ENST00000416006.3	chr16	48292528:48292651:48295334:48295498:48296688:48296783,	48295335	48295498	48295473	48295473	Frame_Shift_Del	A	-	p.K288fs
LIHC	TCGA-DD-A39Y-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53281204:53281415:53283782:53283978:53288349:53288517,	53283783	53283978	53283941	53283941	Frame_Shift_Del	T	-	p.I1275fs
LIHC	TCGA-DD-A39Y-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53500969:53501081:53503827:53504097:53504294:53504575,	53503828	53504097	53503947	53503947	Frame_Shift_Del	C	-	p.P700fs
LIHC	TCGA-DD-A39Y-01	AKTIP	ENST00000563928.1,ENST00000568022.1,ENST00000561799.1,ENST00000565408.1,ENST00000568596.1,ENST00000566045.1,ENST00000563108.1,ENST00000300245.4,ENST00000570004.1,ENST00000394657.7	chr16	53529173:53529238:53532302:53532508:53534129:53534241,	53532303	53532508	53532427	53532427	Frame_Shift_Del	A	-	p.S42fs
LIHC	TCGA-DD-A39Y-01	RPGRIP1L	ENST00000564374.1,ENST00000562588.1,ENST00000379925.3,ENST00000262135.4,ENST00000562230.1,ENST00000563746.1	chr16	53726138:53726276:53730062:53730207:53734550:53734638,	53730063	53730207	53730105	53730105	Frame_Shift_Del	A	-	p.L64fs
LIHC	TCGA-DD-A39Y-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000568653.3,ENST00000563746.1,ENST00000566096.1	chr16	53730124:53730207:53734550:53734642:53737714:53737756,	53734551	53734642	53734591	53734591	Frame_Shift_Del	T	-	p.K15fs
LIHC	TCGA-DD-A39Y-01	RPGRIP1L	ENST00000562230.1	chr16	53730124:53730207:53734550:53734638:53737714:53737756,	53734551	53734638	53734591	53734591	Frame_Shift_Del	T	-	p.K15fs
LIHC	TCGA-DD-A39Y-01	LPCAT2	ENST00000564084.1,ENST00000262134.5	chr16	55563746:55563859:55565825:55565886:55566735:55566794,	55565826	55565886	55565833	55565833	Frame_Shift_Del	T	-	p.V217fs
LIHC	TCGA-DD-A39Y-01	SLC6A2	ENST00000568529.2,ENST00000566163.1	chr16	55705849:55706087:55719054:55719193:55727921:55728025,	55719055	55719193	55719086	55719086	Frame_Shift_Del	G	-	p.G226fs
LIHC	TCGA-DD-A39Y-01	SLC6A2	ENST00000219833.8,ENST00000566163.1,ENST00000561820.1,ENST00000568943.1,ENST00000567238.1,ENST00000414754.3,ENST00000379906.2	chr16	55729189:55729314:55730136:55730249:55731808:55731937,	55730137	55730249	55730211	55730211	Frame_Shift_Del	T	-	p.F409fs
LIHC	TCGA-DD-A39Y-01	CES1	ENST00000422046.2,ENST00000360526.3,ENST00000361503.4	chr16	55850835:55850874:55853446:55853551:55854283:55854391,	55853447	55853551	55853493	55853493	Frame_Shift_Del	A	-	p.L286fs
LIHC	TCGA-DD-A39Y-01	CES5A	ENST00000518005.1,ENST00000521228.2,ENST00000520435.1,ENST00000290567.9,ENST00000544479.1,ENST00000521992.1,ENST00000541580.1	chr16	55880679:55880752:55883535:55883685:55886792:55886940,	55883536	55883685	55883551	55883551	Frame_Shift_Del	C	-	p.D499fs
LIHC	TCGA-DD-A39Y-01	BBS2	ENST00000562012.1,ENST00000568104.1,ENST00000245157.5	chr16	56533743:56533819:56534765:56534937:56535264:56535409,	56534766	56534937	56534909	56534909	Frame_Shift_Del	A	-	p.F418fs
LIHC	TCGA-DD-A39Y-01	NUP93	ENST00000563405.1,ENST00000564887.1,ENST00000542526.1,ENST00000308159.5,ENST00000569842.1	chr16	56870536:56870629:56871519:56871638:56872863:56872981,	56871520	56871638	56871570	56871570	Frame_Shift_Del	C	-	p.V527fs
LIHC	TCGA-DD-A39Y-01	SLC12A3	ENST00000563236.1,ENST00000262502.5,ENST00000566786.1,ENST00000438926.2	chr16	56914090:56914165:56916307:56916409:56917960:56918116,	56916308	56916409	56916335	56916335	Frame_Shift_Del	T	-	p.I532fs
LIHC	TCGA-DD-A39Y-01	CPNE2	ENST00000537605.1	chr16	57126518:57126702:57144619:57144834:57147199:57147264,	57144620	57144834	57144698	57144698	Frame_Shift_Del	C	-	p.A15fs
LIHC	TCGA-DD-A39Y-01	ARL2BP	ENST00000563234.1,ENST00000219204.3	chr16	57279991:57280053:57282448:57282555:57283678:57283764,	57282449	57282555	57282542	57282542	Frame_Shift_Del	T	-	p.I65fs
LIHC	TCGA-DD-A39Y-01	CIAPIN1	ENST00000568940.1,ENST00000565961.1,ENST00000569370.1	chr16	57463088:57463192:57464169:57464251:57465062:57465178,57463088:57463192:57464169:57464251:57466398:57466472,	57464170	57464251	57464216	57464216	Frame_Shift_Del	T	-	p.K261fs
LIHC	TCGA-DD-A39Y-01	KATNB1	ENST00000566611.1,ENST00000379661.3,ENST00000566726.1,ENST00000562592.1,ENST00000563127.1	chr16	57785172:57785214:57785552:57785636:57785851:57785948,	57785553	57785636	57785588	57785588	Frame_Shift_Del	C	-	p.S156fs
LIHC	TCGA-DD-A39Y-01	CNGB1	ENST00000564448.1,ENST00000251102.8	chr16	57957016:57957284:57965619:57965782:57973333:57973453,	57965620	57965782	57965720	57965720	Frame_Shift_Del	G	-	p.L473fs
LIHC	TCGA-DD-A39Y-01	CSNK2A2	ENST00000262506.3,ENST00000566813.1	chr16	58202513:58202597:58208354:58208414:58218163:58218214,	58208355	58208414	58208375	58208375	Frame_Shift_Del	A	-	p.Y137fs
LIHC	TCGA-DD-A39Y-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58590765:58590897:58592376:58592578:58594115:58594266,	58592377	58592578	58592447	58592447	Frame_Shift_Del	A	-	p.F754fs
LIHC	TCGA-DD-A39Y-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58616959:58617086:58619241:58619410:58620448:58620652,	58619242	58619410	58619249	58619249	Frame_Shift_Del	A	-	p.C267fs
LIHC	TCGA-DD-A39Y-01	GOT2	ENST00000434819.2,ENST00000245206.5	chr16	58743320:58743471:58749917:58750083:58750566:58750717,	58749918	58750083	58749964	58749964	Frame_Shift_Del	G	-	p.R325fs
LIHC	TCGA-DD-A39Y-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000577730.1,ENST00000584337.1	chr16	61760997:61761119:61823249:61823386:61851382:61851636,	61823250	61823386	61823382	61823382	Frame_Shift_Del	A	-	p.S428fs
LIHC	TCGA-DD-A39Y-01	CDH16	ENST00000394055.3	chr16	66943888:66943996:66944162:66944339:66945084:66945218,	66944163	66944339	66944227	66944227	Frame_Shift_Del	G	-	p.P701fs
LIHC	TCGA-DD-A39Y-01	CDH16	ENST00000565796.1	chr16	66943888:66943996:66944162:66944288:66945084:66945218,	66944163	66944288	66944227	66944227	Frame_Shift_Del	G	-	p.P701fs
LIHC	TCGA-DD-A39Y-01	CDH16	ENST00000568698.1,ENST00000570262.1,ENST00000568632.1,ENST00000299752.4	chr16	66943888:66943996:66944162:66944405:66945084:66945218,	66944163	66944405	66944227	66944227	Frame_Shift_Del	G	-	p.P701fs
LIHC	TCGA-DD-A39Y-01	CDH16	ENST00000394055.3	chr16	66943888:66943996:66944162:66944339:66945084:66945218,	66944163	66944339	66944236	66944236	Frame_Shift_Del	C	-	p.G698fs
LIHC	TCGA-DD-A39Y-01	CDH16	ENST00000565796.1	chr16	66943888:66943996:66944162:66944288:66945084:66945218,	66944163	66944288	66944236	66944236	Frame_Shift_Del	C	-	p.G698fs
LIHC	TCGA-DD-A39Y-01	CDH16	ENST00000568698.1,ENST00000570262.1,ENST00000568632.1,ENST00000299752.4	chr16	66943888:66943996:66944162:66944405:66945084:66945218,	66944163	66944405	66944236	66944236	Frame_Shift_Del	C	-	p.G698fs
LIHC	TCGA-DD-A39Y-01	CES2	ENST00000568470.1	chr16	66969466:66969614:66971939:66972144:66973119:66973261,66968373:66969879:66971939:66972144:66973119:66973261,	66971940	66972144	66972086	66972086	Frame_Shift_Del	C	-	p.P140fs
LIHC	TCGA-DD-A39Y-01	CES4A	ENST00000540947.2,ENST00000543561.1,ENST00000541479.1,ENST00000326686.5,ENST00000338718.4,ENST00000398354.1,ENST00000540579.1,ENST00000538199.1	chr16	67034540:67034682:67034759:67034893:67035210:67035364,	67034760	67034893	67034883	67034883	Frame_Shift_Del	G	-	p.G176fs
LIHC	TCGA-DD-A39Y-01	CES4A	ENST00000535543.1	chr16	67034540:67034682:67034759:67034949:67035210:67035364,	67034760	67034949	67034883	67034883	Frame_Shift_Del	G	-	p.G176fs
LIHC	TCGA-DD-A39Y-01	CES4A	ENST00000535696.1	chr16	67034540:67034682:67034759:67034905:67035210:67035364,	67034760	67034905	67034883	67034883	Frame_Shift_Del	G	-	p.G176fs
LIHC	TCGA-DD-A39Y-01	C16orf70	ENST00000569626.1	chr16	67165188:67165232:67166348:67166814:67168070:67168168,	67166349	67166814	67166358	67166358	Frame_Shift_Del	T	-	p.H95fs
LIHC	TCGA-DD-A39Y-01	C16orf70	ENST00000569626.1	chr16	67165188:67165232:67166348:67166814:67168070:67168168,	67166349	67166814	67166755	67166755	Frame_Shift_Del	T	-	p.F131fs
LIHC	TCGA-DD-A39Y-01	HSF4	ENST00000522295.1,ENST00000584272.1,ENST00000522870.1,ENST00000523562.1,ENST00000517750.1,ENST00000520528.1,ENST00000421453.1,ENST00000520833.1,ENST00000434833.2	chr16	67201415:67201502:67201726:67201850:67202733:67202786,	67201727	67201850	67201727	67201727	Frame_Shift_Del	C	-	p.A320fs
LIHC	TCGA-DD-A39Y-01	HSF4	ENST00000521314.1,ENST00000264009.8,ENST00000521374.1	chr16	67201415:67201502:67201622:67201850:67202733:67202786,	67201623	67201850	67201727	67201727	Frame_Shift_Del	C	-	p.A320fs
LIHC	TCGA-DD-A39Y-01	LRRC36	ENST00000565019.2,ENST00000567823.1,ENST00000563189.1,ENST00000329956.6	chr16	67409217:67409315:67410629:67410775:67412491:67412615,	67410630	67410775	67410726	67410726	Frame_Shift_Del	G	-	p.R587fs
LIHC	TCGA-DD-A39Y-01	LRRC36	ENST00000565019.2,ENST00000567823.1,ENST00000563189.1,ENST00000329956.6	chr16	67409217:67409315:67412491:67412615:67416035:67416150,67410629:67410775:67412491:67412615:67416035:67416150,	67412492	67412615	67412533	67412533	Frame_Shift_Del	C	-	p.N616fs
LIHC	TCGA-DD-A39Y-01	ACD	ENST00000602860.1,ENST00000393919.4,ENST00000219251.8	chr16	67691664:67691756:67691888:67692265:67692457:67692544,	67691889	67692265	67692103	67692103	Frame_Shift_Del	G	-	p.P414fs
LIHC	TCGA-DD-A39Y-01	RANBP10	ENST00000602887.1,ENST00000602815.1,ENST00000411657.2,ENST00000602677.1,ENST00000602525.1,ENST00000317506.3	chr16	67771915:67771938:67778190:67778358:67805936:67805989,	67778191	67778358	67778250	67778250	Frame_Shift_Del	C	-	p.G170fs
LIHC	TCGA-DD-A39Y-01	NFATC3	ENST00000379165.4,ENST00000575270.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4	chr16	68119560:68119687:68155889:68157024:68160350:68160513,	68155890	68157024	68156036	68156036	Frame_Shift_Del	A	-	p.K84fs
LIHC	TCGA-DD-A39Y-01	NFATC3	ENST00000569766.1,ENST00000570212.1,ENST00000567152.1,ENST00000346183.3	chr16	68217142:68217269:68224670:68225678:68248231:68248335,68217142:68217269:68224670:68225678:68260252:68260374,	68224671	68225678	68225137	68225137	Frame_Shift_Del	T	-	p.H855fs
LIHC	TCGA-DD-A39Y-01	SLC7A6	ENST00000219343.6,ENST00000379152.3,ENST00000566454.1	chr16	68325460:68325564:68328607:68328704:68330266:68330416,	68328608	68328704	68328674	68328674	Frame_Shift_Del	T	-	p.R363fs
LIHC	TCGA-DD-A39Y-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000569036.2,ENST00000429102.2	chr16	68713701:68713877:68714870:68714999:68716204:68716295,	68714871	68714999	68714990	68714990	Frame_Shift_Del	C	-	p.D329fs
LIHC	TCGA-DD-A39Y-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000429102.2	chr16	68714870:68714999:68716204:68716390:68718485:68718727,	68716205	68716390	68716350	68716350	Frame_Shift_Del	C	-	p.T381fs
LIHC	TCGA-DD-A39Y-01	CDH1	ENST00000566510.1,ENST00000566612.1,ENST00000422392.2	chr16	68771254:68771366:68772199:68772314:68835572:68835796,	68772200	68772314	68772307	68772307	Frame_Shift_Del	G	-	p.L52fs
LIHC	TCGA-DD-A39Y-01	HAS3	ENST00000566118.1	chr16	69140511:69140618:69143298:69143934:69147343:69147445,	69143299	69143934	69143391	69143391	Frame_Shift_Del	G	-	p.T31fs
LIHC	TCGA-DD-A39Y-01	CHTF8	ENST00000448552.2,ENST00000306585.6,ENST00000398235.2	chr16	69154198:69154552:69154955:69155073:69166386:69166470,69154198:69154552:69154955:69155073:69155338:69155395,	69154956	69155073	69155015	69155015	Frame_Shift_Del	C	-	p.A28fs
LIHC	TCGA-DD-A39Y-01	NIP7	ENST00000254940.5	chr16	69374178:69374235:69375082:69375223:69375435:69377007,	69375083	69375223	69375168	69375168	Frame_Shift_Del	A	-	p.E123fs
LIHC	TCGA-DD-A39Y-01	TERF2	ENST00000603068.1,ENST00000566257.1,ENST00000254942.3,ENST00000569280.1,ENST00000566750.1,ENST00000567296.2,ENST00000569611.2	chr16	69404436:69404532:69406171:69406258:69418482:69418553,	69406172	69406258	69406199	69406199	Frame_Shift_Del	T	-	p.K222fs
LIHC	TCGA-DD-A39Y-01	WWP2	ENST00000359154.2,ENST00000544162.1,ENST00000448661.1,ENST00000356003.2,ENST00000569174.1,ENST00000563618.1,ENST00000542271.1	chr16	69875926:69876023:69905706:69905834:69921941:69922061,	69905707	69905834	69905742	69905742	Frame_Shift_Del	C	-	p.T204fs
LIHC	TCGA-DD-A39Y-01	WWP2	ENST00000359154.2,ENST00000570104.1,ENST00000544162.1,ENST00000448661.1,ENST00000356003.2,ENST00000569174.1,ENST00000542271.1	chr16	69905706:69905834:69921941:69922152:69942663:69942753,	69921942	69922152	69922029	69922029	Frame_Shift_Del	C	-	p.T264fs
LIHC	TCGA-DD-A39Y-01	WWP2	ENST00000359154.2,ENST00000544162.1,ENST00000448661.1,ENST00000356003.2,ENST00000567579.1,ENST00000569297.1,ENST00000542271.1	chr16	69942663:69942753:69951611:69951786:69959332:69959387,	69951612	69951786	69951747	69951747	Frame_Shift_Del	G	-	p.Q380fs
LIHC	TCGA-DD-A39Y-01	CLEC18C	ENST00000314151.8,ENST00000536907.2,ENST00000569347.2,ENST00000564976.1,ENST00000569201.2,ENST00000541793.2	chr16	70208849:70208941:70211143:70211383:70215752:70215850,	70211144	70211383	70211205	70211205	Frame_Shift_Del	C	-	p.T93fs
LIHC	TCGA-DD-A39Y-01	DDX19A	ENST00000443119.2,ENST00000569771.1,ENST00000566574.1,ENST00000569319.1,ENST00000575878.1,ENST00000417604.2,ENST00000302243.7	chr16	70400526:70400764:70404125:70404288:70405274:70405466,	70404126	70404288	70404283	70404283	Frame_Shift_Del	C	-	p.A393fs
LIHC	TCGA-DD-A39Y-01	COG4	ENST00000323786.5,ENST00000482252.1,ENST00000564415.1,ENST00000530314.1	chr16	70524232:70524295:70530168:70530334:70531123:70531290,	70530169	70530334	70530267	70530267	Frame_Shift_Del	C	-	p.V517fs
LIHC	TCGA-DD-A39Y-01	SF3B3	ENST00000302516.5	chr16	70590081:70590237:70590788:70590932:70594371:70594494,	70590789	70590932	70590821	70590821	Frame_Shift_Del	C	-	p.L633fs
LIHC	TCGA-DD-A39Y-01	SF3B3	ENST00000302516.5,ENST00000568539.1	chr16	70594371:70594494:70595532:70595687:70597778:70597936,	70595533	70595687	70595631	70595631	Frame_Shift_Del	T	-	p.G744fs
LIHC	TCGA-DD-A39Y-01	SF3B3	ENST00000302516.5	chr16	70599270:70599427:70601313:70601439:70602185:70602398,	70601314	70601439	70601376	70601376	Frame_Shift_Del	G	-	p.V963fs
LIHC	TCGA-DD-A39Y-01	MTSS1L	ENST00000338779.6	chr16	70699368:70699443:70708208:70708431:70710783:70710881,	70708209	70708431	70708286	70708286	Frame_Shift_Del	G	-	p.H326fs
LIHC	TCGA-DD-A39Y-01	VAC14	ENST00000261776.5,ENST00000568548.1,ENST00000566655.1	chr16	70818015:70818123:70818678:70818741:70819604:70819772,	70818679	70818741	70818683	70818683	Frame_Shift_Del	A	-	p.L161fs
LIHC	TCGA-DD-A39Y-01	CALB2	ENST00000302628.4,ENST00000349553.5,ENST00000562305.1	chr16	71406080:71406132:71408647:71408737:71411569:71411650,	71408648	71408737	71408666	71408666	Frame_Shift_Del	T	-	p.F64fs
LIHC	TCGA-DD-A39Y-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000299980.4,ENST00000564155.1,ENST00000393512.3	chr16	71766287:71767062:71768511:71768610:71772844:71773005,	71768512	71768610	71768551	71768551	Frame_Shift_Del	C	-	p.G776fs
LIHC	TCGA-DD-A39Y-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000450149.2,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3	chr16	71795414:71795470:71798252:71798351:71798548:71798578,	71798253	71798351	71798290	71798290	Frame_Shift_Del	A	-	p.L294fs
LIHC	TCGA-DD-A39Y-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828384	72828384	Frame_Shift_Del	G	-	p.R2733fs
LIHC	TCGA-DD-A39Y-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829585	72829585	Frame_Shift_Del	T	-	p.K2332fs
LIHC	TCGA-DD-A39Y-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830489	72830489	Frame_Shift_Del	G	-	p.P2031fs
LIHC	TCGA-DD-A39Y-01	CLEC18B	ENST00000339953.5	chr16	74444433:74444530:74444802:74444932:74445566:74445673,	74444803	74444932	74444920	74444920	Frame_Shift_Del	C	-	p.V333fs
LIHC	TCGA-DD-A39Y-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000561481.1,ENST00000447066.2	chr16	74497253:74497377:74499573:74499711:74501653:74501746,	74499574	74499711	74499649	74499649	Frame_Shift_Del	A	-	p.F864fs
LIHC	TCGA-DD-A39Y-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000562090.1,ENST00000447066.2	chr16	74524898:74525113:74526854:74527038:74528657:74528729,	74526855	74527038	74526957	74526957	Frame_Shift_Del	T	-	p.S378fs
LIHC	TCGA-DD-A39Y-01	WWOX	ENST00000408984.3,ENST00000563358.1,ENST00000566780.1,ENST00000355860.3,ENST00000406884.2,ENST00000569332.1,ENST00000561846.1	chr16	78143674:78143732:78148872:78149051:78198079:78198186,	78148873	78149051	78148883	78148883	Frame_Shift_Del	A	-	p.K81fs
LIHC	TCGA-DD-A39Y-01	CDYL2	ENST00000563890.1,ENST00000566173.1,ENST00000562812.1,ENST00000570137.2	chr16	80637812:80638443:80641988:80642132:80646522:80646733,	80641989	80642132	80642049	80642049	Frame_Shift_Del	G	-	p.P434fs
LIHC	TCGA-DD-A39Y-01	CENPN	ENST00000569461.1,ENST00000299572.5,ENST00000393335.3,ENST00000439957.3,ENST00000568445.1,ENST00000428963.2	chr16	81040867:81040882:81045534:81045715:81047740:81047786,	81045535	81045715	81045631	81045631	Frame_Shift_Del	T	-	p.D29fs
LIHC	TCGA-DD-A39Y-01	C16orf46	ENST00000299578.5	chr16	81095314:81095743:81097350:81097598:81099797:81099886,	81097351	81097598	81097402	81097402	Frame_Shift_Del	T	-	p.E53fs
LIHC	TCGA-DD-A39Y-01	C16orf46	ENST00000299578.5	chr16	81095314:81095743:81097350:81097598:81099797:81099886,	81097351	81097598	81097455	81097455	Frame_Shift_Del	T	-	p.S36fs
LIHC	TCGA-DD-A39Y-01	C16orf46	ENST00000299578.5	chr16	81095314:81095743:81097350:81097598:81099797:81099886,	81097351	81097598	81097514	81097514	Frame_Shift_Del	T	-	p.N17fs
LIHC	TCGA-DD-A39Y-01	HSD17B2	ENST00000199936.4,ENST00000569351.2	chr16	82069245:82069294:82101774:82101987:82104546:82104675,	82101775	82101987	82101889	82101889	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-DD-A39Y-01	CDH13	ENST00000565636.1,ENST00000268613.10,ENST00000566620.1,ENST00000446376.2,ENST00000431540.3	chr16	82891966:82892078:83065614:83065823:83158989:83159106,	83065615	83065823	83065698	83065698	Frame_Shift_Del	T	-	p.L81fs
LIHC	TCGA-DD-A39Y-01	MBTPS1	ENST00000343411.3	chr16	84129206:84129410:84132657:84132915:84135225:84135712,	84132658	84132915	84132740	84132740	Frame_Shift_Del	C	-	p.G113fs
LIHC	TCGA-DD-A39Y-01	DNAAF1	ENST00000567918.1,ENST00000563093.1,ENST00000334315.5,ENST00000378553.5,ENST00000570298.1	chr16	84182611:84182747:84183855:84183947:84188181:84188403,	84183856	84183947	84183934	84183934	Frame_Shift_Del	T	-	p.Y113fs
LIHC	TCGA-DD-A39Y-01	ATP2C2	ENST00000416219.2,ENST00000420010.2,ENST00000262429.4,ENST00000565631.1	chr16	84482138:84482295:84485526:84485697:84486743:84486841,	84485527	84485697	84485666	84485666	Frame_Shift_Del	G	-	p.T600fs
LIHC	TCGA-DD-A39Y-01	GSE1	ENST00000393243.1,ENST00000253458.7,ENST00000405402.2,ENST00000412692.1	chr16	85690882:85691210:85694751:85695371:85696586:85696699,	85694752	85695371	85695251	85695251	Frame_Shift_Del	C	-	p.P715fs
LIHC	TCGA-DD-A39Y-01	C16orf74	ENST00000602675.1	chr16	85741259:85741672:85743769:85743891:85768795:85768841,	85743770	85743891	85743813	85743813	Frame_Shift_Del	G	-	p.P31fs
LIHC	TCGA-DD-A39Y-01	C16orf74	ENST00000602719.1	chr16	85741259:85741672:85743769:85743913:85768795:85768841,85723775:85724383:85743769:85743913:85768795:85768841,	85743770	85743913	85743813	85743813	Frame_Shift_Del	G	-	p.P31fs
LIHC	TCGA-DD-A39Y-01	COX4I1	ENST00000564544.1	chr16	85834810:85834884:85838542:85838759:85839338:85839470,	85838543	85838759	85838566	85838566	Frame_Shift_Del	T	-	p.F33fs
LIHC	TCGA-DD-A39Y-01	COX4I1	ENST00000561569.1,ENST00000253452.2,ENST00000564903.1,ENST00000562336.1,ENST00000568794.1	chr16	85834810:85834884:85838542:85838710:85839338:85839470,	85838543	85838710	85838566	85838566	Frame_Shift_Del	T	-	p.F33fs
LIHC	TCGA-DD-A39Y-01	COX4I1	ENST00000566405.1	chr16	85834810:85834884:85838546:85838710:85839338:85839470,	85838547	85838710	85838566	85838566	Frame_Shift_Del	T	-	p.F33fs
LIHC	TCGA-DD-A39Y-01	MTHFSD	ENST00000543303.2,ENST00000381214.5,ENST00000546093.1,ENST00000568037.1,ENST00000564364.1	chr16	86582093:86582183:86585784:86585898:86588250:86588354,	86585785	86585898	86585814	86585814	Frame_Shift_Del	G	-	p.Q70fs
LIHC	TCGA-DD-A39Y-01	ZCCHC14	ENST00000268616.4,ENST00000568020.1	chr16	87457415:87457487:87466733:87466807:87493613:87493737,	87466734	87466807	87466762	87466762	Frame_Shift_Del	T	-	p.N110fs
LIHC	TCGA-DD-A39Y-01	KLHDC4	ENST00000566349.1,ENST00000353170.5,ENST00000567298.1,ENST00000347925.5,ENST00000270583.5,ENST00000562155.1	chr16	87741955:87742072:87742870:87743273:87744840:87745049,	87742871	87743273	87743257	87743257	Frame_Shift_Del	T	-	p.K356fs
LIHC	TCGA-DD-A39Y-01	ZFPM1	ENST00000319555.3	chr16	88580794:88580928:88593221:88593324:88594439:88594646,	88593222	88593324	88593283	88593283	Frame_Shift_Del	C	-	p.A155fs
LIHC	TCGA-DD-A39Y-01	PIEZO1	ENST00000301015.9	chr16	88793481:88793600:88793964:88794069:88798113:88798318,	88793965	88794069	88794049	88794049	Frame_Shift_Del	G	-	p.R1073fs
LIHC	TCGA-DD-A39Y-01	PIEZO1	ENST00000301015.9	chr16	88793964:88794069:88798113:88798318:88798742:88798943,	88798114	88798318	88798128	88798128	Frame_Shift_Del	G	-	p.P1061fs
LIHC	TCGA-DD-A39Y-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347629	89347629	Frame_Shift_Del	T	-	p.N1774fs
LIHC	TCGA-DD-A39Y-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348096	89348096	Frame_Shift_Del	G	-	p.P1618fs
LIHC	TCGA-DD-A39Y-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348518	89348518	Frame_Shift_Del	C	-	p.D1478fs
LIHC	TCGA-DD-A39Y-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351769	89351769	Frame_Shift_Del	T	-	p.N395fs
LIHC	TCGA-DD-A39Y-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351794	89351794	Frame_Shift_Del	T	-	p.M386fs
LIHC	TCGA-DD-A39Y-01	CPNE7	ENST00000529800.1,ENST00000319518.8,ENST00000268720.5	chr16	89657414:89657466:89657534:89657668:89661774:89661831,	89657535	89657668	89657657	89657657	Frame_Shift_Del	G	-	p.G506fs
LIHC	TCGA-DD-A39Y-01	DPEP1	ENST00000564281.1	chr16	89680080:89680127:89696712:89696922:89702315:89702448,	89696713	89696922	89696907	89696907	Frame_Shift_Del	C	-	p.S30fs
LIHC	TCGA-DD-A39Y-01	CDK10	ENST00000510811.2,ENST00000505473.1,ENST00000331006.8,ENST00000561477.1,ENST00000353379.7,ENST00000564192.1	chr16	89759681:89759734:89759805:89759875:89760580:89760640,	89759806	89759875	89759854	89759854	Frame_Shift_Del	C	-	p.T149fs
LIHC	TCGA-DD-A39Y-01	ZNF276	ENST00000563541.1,ENST00000568295.1,ENST00000568064.1,ENST00000562530.1,ENST00000446326.2	chr16	89790013:89790117:89793686:89793733:89795642:89795726,	89793687	89793733	89793732	89793732	Frame_Shift_Del	G	-	p.R276fs
LIHC	TCGA-DD-A39Y-01	ZNF276	ENST00000443381.2,ENST00000569426.1,ENST00000563983.1,ENST00000561536.1,ENST00000289816.5	chr16	89790013:89790117:89793686:89793765:89795642:89795726,	89793687	89793765	89793732	89793732	Frame_Shift_Del	G	-	p.R276fs
LIHC	TCGA-DD-A39Y-01	FANCA	ENST00000561722.1,ENST00000564475.1,ENST00000568626.1,ENST00000389301.3,ENST00000564870.1,ENST00000568369.1	chr16	89805689:89805697:89805885:89805961:89806401:89806486,	89805886	89805961	89805890	89805890	Frame_Shift_Del	A	-	p.Y1336fs
LIHC	TCGA-DD-A39Y-01	FANCA	ENST00000561722.1,ENST00000564475.1,ENST00000568626.1,ENST00000389301.3,ENST00000564870.1,ENST00000568369.1	chr16	89805689:89805697:89805885:89805961:89806401:89806486,	89805886	89805961	89805925	89805925	Frame_Shift_Del	G	-	p.P1324fs
LIHC	TCGA-DD-A39Y-01	FANCA	ENST00000563673.1,ENST00000389302.3,ENST00000543736.1,ENST00000534992.1,ENST00000389301.3,ENST00000567621.1,ENST00000566889.1,ENST00000568369.1	chr16	89866012:89866046:89869666:89869749:89871687:89871800,	89869667	89869749	89869675	89869675	Frame_Shift_Del	T	-	p.M262fs
LIHC	TCGA-DD-A39Y-01	GAS8	ENST00000540721.1,ENST00000569558.1,ENST00000565062.1,ENST00000536122.1,ENST00000268699.4	chr16	90099125:90099332:90102040:90102095:90102788:90102994,	90102041	90102095	90102076	90102076	Frame_Shift_Del	T	-	p.D177fs
LIHC	TCGA-DD-A39Y-01	VPS53	ENST00000437048.2,ENST00000576149.1	chr17	424840:424978:436081:436151:440267:440416,	436082	436151	436126	436126	Frame_Shift_Del	G	-	p.H681fs
LIHC	TCGA-DD-A39Y-01	VPS53	ENST00000573028.1,ENST00000437048.2,ENST00000291074.5,ENST00000446250.2,ENST00000389040.5,ENST00000571805.1	chr17	489509:489604:505034:505136:526772:526909,	505035	505136	505042	505042	Frame_Shift_Del	A	-	p.L404fs
LIHC	TCGA-DD-A39Y-01	ABR	ENST00000574437.1,ENST00000536794.2,ENST00000291107.2,ENST00000544583.2,ENST00000574544.1,ENST00000302538.5	chr17	961209:961285:961984:962107:970316:970482,	961985	962107	962021	962021	Frame_Shift_Del	G	-	p.P377fs
LIHC	TCGA-DD-A39Y-01	MYO1C	ENST00000572615.1,ENST00000545534.2,ENST00000575158.1,ENST00000359786.5,ENST00000361007.2,ENST00000438665.2	chr17	1372824:1372908:1373468:1373628:1373728:1373778,	1373469	1373628	1373545	1373545	Frame_Shift_Del	A	-	p.L818fs
LIHC	TCGA-DD-A39Y-01	PRPF8	ENST00000304992.6,ENST00000572621.1	chr17	1564564:1564700:1564904:1565084:1565199:1565332,	1564905	1565084	1564981	1564981	Frame_Shift_Del	C	-	p.E1376fs
LIHC	TCGA-DD-A39Y-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1704010	1704010	Frame_Shift_Del	T	-	p.E226fs
LIHC	TCGA-DD-A39Y-01	METTL16	ENST00000263092.6,ENST00000571669.2	chr17	2367641:2367644:2371054:2371170:2380979:2381179,2367641:2367644:2371054:2371170:2376817:2376958,	2371055	2371170	2371076	2371076	Frame_Shift_Del	A	-	p.F188fs
LIHC	TCGA-DD-A39Y-01	RAP1GAP2	ENST00000574515.1	chr17	2901514:2901670:2908634:2908734:2909248:2909335,	2908635	2908734	2908717	2908717	Frame_Shift_Del	C	-	p.P420fs
LIHC	TCGA-DD-A39Y-01	RAP1GAP2	ENST00000540393.2,ENST00000542807.1,ENST00000254695.8,ENST00000366401.4	chr17	2901514:2901670:2908662:2908734:2909248:2909335,	2908663	2908734	2908717	2908717	Frame_Shift_Del	C	-	p.P420fs
LIHC	TCGA-DD-A39Y-01	CAMKK1	ENST00000573483.1	chr17	3783639:3783728:3784920:3785858:3786335:3786469,	3784921	3785858	3785608	3785608	Frame_Shift_Del	G	-	p.H248fs
LIHC	TCGA-DD-A39Y-01	CAMKK1	ENST00000381771.2,ENST00000158166.5	chr17	3784920:3784942:3785550:3785664:3785821:3785858,	3785551	3785664	3785608	3785608	Frame_Shift_Del	G	-	p.H248fs
LIHC	TCGA-DD-A39Y-01	ANKFY1	ENST00000572412.1,ENST00000574367.1	chr17	4084548:4084667:4085475:4085647:4086692:4086846,	4085476	4085647	4085568	4085568	Frame_Shift_Del	G	-	p.R677fs
LIHC	TCGA-DD-A39Y-01	ANKFY1	ENST00000341657.4,ENST00000570535.1	chr17	4084548:4084667:4085475:4085644:4086692:4086846,	4085476	4085644	4085568	4085568	Frame_Shift_Del	G	-	p.R677fs
LIHC	TCGA-DD-A39Y-01	CXCL16	ENST00000293778.6,ENST00000575168.1,ENST00000574412.1	chr17	4637883:4637947:4638386:4638803:4641702:4641785,	4638387	4638803	4638546	4638546	Frame_Shift_Del	C	-	p.E206fs
LIHC	TCGA-DD-A39Y-01	RABEP1	ENST00000546142.2,ENST00000341923.6,ENST00000408982.2	chr17	5185781:5185815:5211988:5212117:5235243:5235447,	5211989	5212117	5212061	5212061	Frame_Shift_Del	A	-	p.E36fs
LIHC	TCGA-DD-A39Y-01	RABEP1	ENST00000546142.2,ENST00000341923.6,ENST00000408982.2	chr17	5185781:5185815:5211988:5212117:5235243:5235447,	5211989	5212117	5212093	5212093	Frame_Shift_Del	A	-	p.K47fs
LIHC	TCGA-DD-A39Y-01	RPAIN	ENST00000575599.1	chr17	5329555:5329619:5331390:5331531:5335861:5335928,5329295:5329402:5331390:5331531:5335861:5335928,5326088:5326149:5331390:5331531:5335861:5335928,	5331391	5331531	5331463	5331463	Frame_Shift_Del	C	-	p.P188fs
LIHC	TCGA-DD-A39Y-01	RPAIN	ENST00000573126.1	chr17	5326088:5326149:5329290:5331531:5335861:5335928,	5329291	5331531	5331463	5331463	Frame_Shift_Del	C	-	p.P188fs
LIHC	TCGA-DD-A39Y-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462399	5462399	Frame_Shift_Del	T	-	p.K539fs
LIHC	TCGA-DD-A39Y-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462960	5462960	Frame_Shift_Del	C	-	p.G352fs
LIHC	TCGA-DD-A39Y-01	KIAA0753	ENST00000572370.1,ENST00000589033.1,ENST00000361413.3,ENST00000542826.2,ENST00000570790.1,ENST00000542606.1	chr17	6493126:6493323:6493829:6493950:6498291:6498319,	6493830	6493950	6493942	6493942	Frame_Shift_Del	T	-	p.I817fs
LIHC	TCGA-DD-A39Y-01	DVL2	ENST00000005340.5,ENST00000575458.1	chr17	7130973:7131102:7131295:7131363:7132287:7132354,	7131296	7131363	7131360	7131360	Frame_Shift_Del	G	-	p.P346fs
LIHC	TCGA-DD-A39Y-01	PER1	ENST00000581082.1,ENST00000354903.5,ENST00000582719.1,ENST00000317276.4	chr17	8049982:8050083:8050214:8050320:8050567:8050699,	8050215	8050320	8050224	8050224	Frame_Shift_Del	G	-	p.R576fs
LIHC	TCGA-DD-A39Y-01	AURKB	ENST00000578549.1,ENST00000580998.1,ENST00000535053.1,ENST00000316199.6,ENST00000578753.1,ENST00000534871.1,ENST00000585124.1	chr17	8108278:8108362:8108533:8108708:8109808:8109957,	8108534	8108708	8108670	8108670	Frame_Shift_Del	G	-	p.P243fs
LIHC	TCGA-DD-A39Y-01	AURKB	ENST00000584972.1	chr17	8108176:8108362:8108635:8108708:8109808:8109957,	8108636	8108708	8108670	8108670	Frame_Shift_Del	G	-	p.P243fs
LIHC	TCGA-DD-A39Y-01	STX8	ENST00000306357.4,ENST00000574431.1,ENST00000575858.1	chr17	9281868:9281970:9395145:9395238:9408354:9408479,	9395146	9395238	9395189	9395189	Frame_Shift_Del	T	-	p.K166fs
LIHC	TCGA-DD-A39Y-01	USP43	ENST00000574408.1	chr17	9569964:9570068:9578207:9578300:9580062:9580198,9559752:9559851:9578207:9578300:9580062:9580198,	9578208	9578300	9578224	9578224	Frame_Shift_Del	C	-	p.P253fs
LIHC	TCGA-DD-A39Y-01	USP43	ENST00000570827.2,ENST00000574408.1,ENST00000575346.1,ENST00000570475.1,ENST00000285199.7	chr17	9578207:9578300:9580062:9580198:9583547:9583683,	9580063	9580198	9580087	9580087	Frame_Shift_Del	C	-	p.F286fs
LIHC	TCGA-DD-A39Y-01	GLP2R	ENST00000262441.5	chr17	9729220:9729569:9737123:9737211:9739687:9739792,	9737124	9737211	9737203	9737203	Frame_Shift_Del	A	-	p.E90fs
LIHC	TCGA-DD-A39Y-01	ARHGAP44	ENST00000262444.9,ENST00000340825.3,ENST00000580768.1,ENST00000379672.5	chr17	12877405:12877627:12883374:12883550:12887847:12888225,	12883375	12883550	12883461	12883461	Frame_Shift_Del	A	-	p.Q617fs
LIHC	TCGA-DD-A39Y-01	NCOR1	ENST00000458113.2	chr17	15968798:15969008:15971207:15971435:15973478:15973612,15968798:15969005:15971207:15971435:15973478:15973612,	15971208	15971435	15971301	15971301	Frame_Shift_Del	G	-	p.H1551fs
LIHC	TCGA-DD-A39Y-01	CCDC144A	ENST00000360495.5,ENST00000360524.8,ENST00000340621.5,ENST00000443444.2,ENST00000399273.1	chr17	16610782:16610856:16612109:16612949:16614992:16615129,	16612110	16612949	16612479	16612479	Frame_Shift_Del	A	-	p.K370fs
LIHC	TCGA-DD-A39Y-01	MPRIP	ENST00000584067.1,ENST00000444976.1	chr17	17041229:17041389:17045940:17046079:17049349:17049406,	17045941	17046079	17046013	17046013	Frame_Shift_Del	G	-	p.V323fs
LIHC	TCGA-DD-A39Y-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696797	17696797	Frame_Shift_Del	C	-	p.P179fs
LIHC	TCGA-DD-A39Y-01	SREBF1	ENST00000355815.4	chr17	17723718:17723835:17726831:17726921:17740040:17740131,	17726832	17726921	17726876	17726876	Frame_Shift_Del	G	-	p.P46fs
LIHC	TCGA-DD-A39Y-01	TOM1L2	ENST00000581396.1,ENST00000537091.2	chr17	17782940:17783057:17787947:17788082:17796974:17797124,17786018:17786177:17787947:17788082:17796974:17797124,17786018:17786177:17787947:17788082:17801909:17801988,	17787948	17788082	17788004	17788004	Frame_Shift_Del	C	-	p.V99fs
LIHC	TCGA-DD-A39Y-01	ATPAF2	ENST00000496852.1,ENST00000474627.3,ENST00000488753.1	chr17	17924436:17924552:17925058:17925171:17927937:17927985,	17925059	17925171	17925113	17925113	Frame_Shift_Del	T	-	p.T188fs
LIHC	TCGA-DD-A39Y-01	MYO15A	ENST00000205890.5	chr17	18047810:18047906:18049185:18049421:18051342:18051524,	18049186	18049421	18049243	18049243	Frame_Shift_Del	A	-	p.N2111fs
LIHC	TCGA-DD-A39Y-01	MYO15A	ENST00000433411.3	chr17	18075470:18075604:18077094:18077235:18082082:18083116,18075470:18075604:18077094:18077235:18082030:18082184,18075520:18075730:18077094:18077235:18082082:18083116,	18077095	18077235	18077149	18077149	Frame_Shift_Del	C	-	p.P3469fs
LIHC	TCGA-DD-A39Y-01	MYO15A	ENST00000433411.3	chr17	18075470:18075604:18077094:18077235:18082082:18083116,18075470:18075604:18077094:18077235:18082030:18082184,18075520:18075730:18077094:18077235:18082082:18083116,	18077095	18077235	18077190	18077190	Frame_Shift_Del	G	-	p.L3482fs
LIHC	TCGA-DD-A39Y-01	SLC5A10	ENST00000395645.3,ENST00000417251.2,ENST00000395647.2	chr17	18863860:18863965:18872364:18872470:18874325:18874531,18863860:18863965:18872364:18872470:18872654:18872735,	18872365	18872470	18872379	18872379	Frame_Shift_Del	G	-	p.A100fs
LIHC	TCGA-DD-A39Y-01	SLC5A10	ENST00000395645.3,ENST00000417251.2,ENST00000395647.2	chr17	18872364:18872470:18872654:18872735:18874325:18874531,	18872655	18872735	18872710	18872710	Frame_Shift_Del	G	-	p.V205fs
LIHC	TCGA-DD-A39Y-01	RNF112	ENST00000461366.1	chr17	19315810:19316096:19316250:19316457:19316592:19316711,	19316251	19316457	19316325	19316325	Frame_Shift_Del	G	-	p.M152fs
LIHC	TCGA-DD-A39Y-01	SLC47A1	ENST00000575377.1,ENST00000573009.1,ENST00000497548.1,ENST00000270570.4,ENST00000395585.1,ENST00000457293.1	chr17	19470451:19470541:19474790:19474885:19476092:19476174,	19474791	19474885	19474851	19474851	Frame_Shift_Del	T	-	p.I458fs
LIHC	TCGA-DD-A39Y-01	ALDH3A1	ENST00000426645.2,ENST00000494157.2,ENST00000395555.3,ENST00000468746.1,ENST00000457500.2,ENST00000225740.6,ENST00000444455.1,ENST00000439102.2,ENST00000479677.2	chr17	19644405:19644523:19645316:19645525:19645857:19645943,	19645317	19645525	19645432	19645432	Frame_Shift_Del	C	-	p.V192fs
LIHC	TCGA-DD-A39Y-01	MAP2K3	ENST00000526076.2,ENST00000395491.2,ENST00000342679.4,ENST00000496046.1,ENST00000316920.6,ENST00000361818.5	chr17	21203856:21203970:21204185:21204305:21205454:21205571,	21204186	21204305	21204266	21204266	Frame_Shift_Del	T	-	p.C120fs
LIHC	TCGA-DD-A39Y-01	WSB1	ENST00000348811.2,ENST00000262394.2,ENST00000467843.2	chr17	25637086:25637200:25638534:25638642:25639235:25639913,	25638535	25638642	25638593	25638593	Frame_Shift_Del	A	-	p.N353fs
LIHC	TCGA-DD-A39Y-01	WSB1	ENST00000348811.2,ENST00000262394.2,ENST00000467843.2	chr17	25637086:25637200:25638534:25638642:25639235:25639913,	25638535	25638642	25638600	25638600	Frame_Shift_Del	T	-	p.L355fs
LIHC	TCGA-DD-A39Y-01	KSR1	ENST00000581975.1	chr17	25919583:25919652:25924293:25924462:25930859:25930914,	25924294	25924462	25924422	25924422	Frame_Shift_Del	C	-	p.N339fs
LIHC	TCGA-DD-A39Y-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
LIHC	TCGA-DD-A39Y-01	IFT20	ENST00000585313.1,ENST00000585089.1,ENST00000395418.3	chr17	26655362:26655759:26656198:26656302:26657468:26657554,	26656199	26656302	26656212	26656212	Frame_Shift_Del	T	-	p.M128fs
LIHC	TCGA-DD-A39Y-01	SLC13A2	ENST00000545060.1,ENST00000579281.1,ENST00000314669.5,ENST00000459818.2,ENST00000537681.1,ENST00000444914.3	chr17	26818747:26818870:26820588:26820807:26821034:26821123,	26820589	26820807	26820679	26820679	Frame_Shift_Del	C	-	p.G372fs
LIHC	TCGA-DD-A39Y-01	SLC13A2	ENST00000545060.1,ENST00000579281.1,ENST00000314669.5,ENST00000459818.2,ENST00000537681.1,ENST00000444914.3	chr17	26818747:26818870:26820588:26820807:26821034:26821123,	26820589	26820807	26820758	26820758	Frame_Shift_Del	T	-	p.F400fs
LIHC	TCGA-DD-A39Y-01	PIGS	ENST00000465444.1,ENST00000268758.9,ENST00000395346.2,ENST00000582615.2,ENST00000308360.7,ENST00000543734.1	chr17	26887066:26887209:26888439:26888647:26890448:26890540,	26888440	26888647	26888540	26888540	Frame_Shift_Del	G	-	p.A192fs
LIHC	TCGA-DD-A39Y-01	SDF2	ENST00000587338.1	chr17	26976263:26976294:26982304:26982501:26989063:26989150,26978503:26978595:26982304:26982501:26988743:26988837,26978503:26978595:26982304:26982501:26989063:26989150,	26982305	26982501	26982354	26982354	Frame_Shift_Del	C	-	p.G100fs
LIHC	TCGA-DD-A39Y-01	RAB34	ENST00000415040.2	chr17	27042658:27042723:27042817:27042919:27043920:27044012,	27042818	27042919	27042875	27042875	Frame_Shift_Del	C	-	p.G86fs
LIHC	TCGA-DD-A39Y-01	MYO18A	ENST00000354329.4,ENST00000530254.2,ENST00000527372.1,ENST00000531253.1	chr17	27419872:27420019:27420340:27420445:27420997:27421108,	27420341	27420445	27420440	27420440	Frame_Shift_Del	T	-	p.K1609fs
LIHC	TCGA-DD-A39Y-01	MYO18A	ENST00000354329.4,ENST00000590242.1,ENST00000530254.2,ENST00000527372.1,ENST00000531253.1,ENST00000533112.1,ENST00000528564.1	chr17	27448127:27448229:27448564:27448741:27448868:27448975,	27448565	27448741	27448594	27448594	Frame_Shift_Del	G	-	p.R448fs
LIHC	TCGA-DD-A39Y-01	TAOK1	ENST00000261716.3	chr17	27834913:27835150:27837881:27838010:27844470:27844674,	27837882	27838010	27837906	27837906	Frame_Shift_Del	A	-	p.K535fs
LIHC	TCGA-DD-A39Y-01	NSRP1	ENST00000247026.5	chr17	28443856:28443881:28445097:28445191:28483557:28483680,28444319:28444350:28445097:28445191:28499559:28499610,28443856:28443881:28445097:28445191:28499559:28499610,	28445098	28445191	28445142	28445142	Frame_Shift_Del	T	-	p.V22fs
LIHC	TCGA-DD-A39Y-01	BLMH	ENST00000578090.1,ENST00000261714.6,ENST00000394819.3	chr17	28575849:28576186:28593902:28593972:28598288:28598406,	28593903	28593972	28593923	28593923	Frame_Shift_Del	C	-	p.G399fs
LIHC	TCGA-DD-A39Y-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601076	28601076	Frame_Shift_Del	A	-	p.F262fs
LIHC	TCGA-DD-A39Y-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601139	28601139	Frame_Shift_Del	T	-	p.N241fs
LIHC	TCGA-DD-A39Y-01	BLMH	ENST00000584603.2,ENST00000580709.1,ENST00000261714.6	chr17	28614841:28614965:28616390:28616500:28618328:28618526,	28616391	28616500	28616399	28616399	Frame_Shift_Del	A	-	p.W105fs
LIHC	TCGA-DD-A39Y-01	GOSR1	ENST00000427274.2,ENST00000467635.2,ENST00000451249.2	chr17	28804444:28804482:28808160:28808275:28811231:28811319,	28808161	28808275	28808169	28808169	Frame_Shift_Del	A	-	p.K14fs
LIHC	TCGA-DD-A39Y-01	GOSR1	ENST00000581721.1,ENST00000491489.2	chr17	28804444:28804482:28808160:28808281:28811231:28811319,	28808161	28808281	28808169	28808169	Frame_Shift_Del	A	-	p.K14fs
LIHC	TCGA-DD-A39Y-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29170930:29171057:29171852:29171934:29182160:29182345,	29171853	29171934	29171920	29171920	Frame_Shift_Del	T	-	p.S812fs
LIHC	TCGA-DD-A39Y-01	TEFM	ENST00000581216.1	chr17	29226003:29226624:29227430:29227580:29231083:29231547,	29227431	29227580	29227529	29227529	Frame_Shift_Del	C	-	p.A183fs
LIHC	TCGA-DD-A39Y-01	TEFM	ENST00000306049.5	chr17	29226003:29226624:29227430:29227539:29231083:29231547,	29227431	29227539	29227529	29227529	Frame_Shift_Del	C	-	p.A183fs
LIHC	TCGA-DD-A39Y-01	ADAP2	ENST00000580525.1,ENST00000584828.1,ENST00000585130.1,ENST00000330889.3	chr17	29272059:29272071:29276304:29276388:29280305:29280368,	29276305	29276388	29276355	29276355	Frame_Shift_Del	A	-	p.L236fs
LIHC	TCGA-DD-A39Y-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654765	29654765	Frame_Shift_Del	C	-	p.I1839fs
LIHC	TCGA-DD-A39Y-01	NF1	ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29663350:29663491:29663652:29663932:29664385:29664600,	29663653	29663932	29663744	29663744	Frame_Shift_Del	T	-	p.I2080fs
LIHC	TCGA-DD-A39Y-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683558	29683558	Frame_Shift_Del	C	-	p.P2567fs
LIHC	TCGA-DD-A39Y-01	RAB11FIP4	ENST00000394744.2	chr17	29815135:29815290:29844668:29844895:29848183:29848202,	29844669	29844895	29844713	29844713	Frame_Shift_Del	C	-	p.I127fs
LIHC	TCGA-DD-A39Y-01	RAB11FIP4	ENST00000394744.2	chr17	29815135:29815290:29844668:29844895:29848183:29848202,	29844669	29844895	29844723	29844723	Frame_Shift_Del	C	-	p.P131fs
LIHC	TCGA-DD-A39Y-01	UTP6	ENST00000484661.1,ENST00000261708.4,ENST00000477128.1	chr17	30193673:30193734:30195064:30195131:30200396:30200414,30192384:30192457:30195064:30195131:30200396:30200414,	30195065	30195131	30195129	30195129	Frame_Shift_Del	A	-	p.L500fs
LIHC	TCGA-DD-A39Y-01	UTP6	ENST00000261708.4,ENST00000477128.1	chr17	30200691:30200772:30202252:30202432:30205268:30205346,	30202253	30202432	30202283	30202283	Frame_Shift_Del	A	-	p.F425fs
LIHC	TCGA-DD-A39Y-01	SUZ12	ENST00000322652.5,ENST00000580398.1	chr17	30315338:30315516:30320260:30320352:30320883:30321027,	30320261	30320352	30320330	30320330	Frame_Shift_Del	A	-	p.Q424fs
LIHC	TCGA-DD-A39Y-01	RHBDL3	ENST00000536287.1	chr17	30594920:30594944:30615810:30616035:30621312:30621461,	30615811	30616035	30615996	30615996	Frame_Shift_Del	C	-	p.C160fs
LIHC	TCGA-DD-A39Y-01	CCT6B	ENST00000436961.3,ENST00000314144.5,ENST00000421975.3	chr17	33266201:33266349:33266635:33266732:33267557:33267640,	33266636	33266732	33266693	33266693	Frame_Shift_Del	A	-	p.F336fs
LIHC	TCGA-DD-A39Y-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310049	33310049	Frame_Shift_Del	T	-	p.F9fs
LIHC	TCGA-DD-A39Y-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310415	33310415	Frame_Shift_Del	G	-	p.G132fs
LIHC	TCGA-DD-A39Y-01	LIG3	ENST00000592690.1	chr17	33307595:33307641:33310250:33310571:33313006:33313150,	33310251	33310571	33310415	33310415	Frame_Shift_Del	G	-	p.G132fs
LIHC	TCGA-DD-A39Y-01	LIG3	ENST00000586435.1,ENST00000588109.1,ENST00000378526.4,ENST00000585740.1,ENST00000585941.1,ENST00000262327.5	chr17	33313112:33313150:33316484:33316682:33317981:33318084,	33316485	33316682	33316509	33316509	Frame_Shift_Del	C	-	p.A239fs
LIHC	TCGA-DD-A39Y-01	NLE1	ENST00000589367.1	chr17	33466302:33466333:33466838:33467085:33468997:33469141,	33466839	33467085	33467076	33467076	Frame_Shift_Del	G	-	p.L58fs
LIHC	TCGA-DD-A39Y-01	NLE1	ENST00000442241.4,ENST00000360831.5,ENST00000593176.1	chr17	33466302:33466333:33466867:33467085:33468997:33469141,	33466868	33467085	33467076	33467076	Frame_Shift_Del	G	-	p.L58fs
LIHC	TCGA-DD-A39Y-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749049	33749049	Frame_Shift_Del	G	-	p.T333fs
LIHC	TCGA-DD-A39Y-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749730	33749730	Frame_Shift_Del	A	-	p.F106fs
LIHC	TCGA-DD-A39Y-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806857	33806857	Frame_Shift_Del	A	-	p.F124fs
LIHC	TCGA-DD-A39Y-01	AP2B1	ENST00000589344.1,ENST00000312678.8,ENST00000537622.2,ENST00000592545.1,ENST00000545922.2	chr17	33984753:33984810:33997875:33997917:33998772:33998919,	33997876	33997917	33997894	33997894	Frame_Shift_Del	G	-	p.G671fs
LIHC	TCGA-DD-A39Y-01	CACNB1	ENST00000577582.1	chr17	37340577:37340636:37341036:37341117:37342748:37342825,	37341037	37341117	37341059	37341059	Frame_Shift_Del	C	-	p.G236fs
LIHC	TCGA-DD-A39Y-01	CACNB1	ENST00000577582.1	chr17	37340577:37340636:37341036:37341117:37342748:37342825,	37341037	37341117	37341100	37341100	Frame_Shift_Del	G	-	p.P222fs
LIHC	TCGA-DD-A39Y-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37588194:37588269:37590501:37590573:37595417:37595446,	37590502	37590573	37590535	37590535	Frame_Shift_Del	C	-	p.G156fs
LIHC	TCGA-DD-A39Y-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37588194:37588269:37590501:37590573:37595417:37595446,	37590502	37590573	37590551	37590551	Frame_Shift_Del	A	-	p.S151fs
LIHC	TCGA-DD-A39Y-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37588194:37588269:37590501:37590573:37595417:37595446,	37590502	37590573	37590565	37590565	Frame_Shift_Del	T	-	p.N146fs
LIHC	TCGA-DD-A39Y-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37596875:37596930:37599802:37599881:37604050:37604157,	37599803	37599881	37599829	37599829	Frame_Shift_Del	A	-	p.L62fs
LIHC	TCGA-DD-A39Y-01	MED1	ENST00000300651.6,ENST00000577831.1	chr17	37599802:37599881:37604050:37604157:37607290:37607521,	37604051	37604157	37604072	37604072	Frame_Shift_Del	A	-	p.I37fs
LIHC	TCGA-DD-A39Y-01	STARD3	ENST00000544210.2	chr17	37814665:37814775:37814961:37815073:37815303:37815359,	37814962	37815073	37815055	37815055	Frame_Shift_Del	C	-	p.P211fs
LIHC	TCGA-DD-A39Y-01	STARD3	ENST00000394250.4,ENST00000580611.1,ENST00000578232.1,ENST00000336308.5,ENST00000488876.1,ENST00000578577.1	chr17	37814756:37814775:37814974:37815073:37815303:37815359,	37814975	37815073	37815055	37815055	Frame_Shift_Del	C	-	p.P211fs
LIHC	TCGA-DD-A39Y-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37881579:37881655:37881959:37882106:37882814:37882912,	37881960	37882106	37882058	37882058	Frame_Shift_Del	C	-	p.P912fs
LIHC	TCGA-DD-A39Y-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37881579:37881655:37881959:37882106:37882814:37882912,	37881960	37882106	37882064	37882064	Frame_Shift_Del	C	-	p.P915fs
LIHC	TCGA-DD-A39Y-01	ERBB2	ENST00000406381.2,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37883067:37883256:37883547:37883800:37883941:37884049,	37883548	37883800	37883733	37883733	Frame_Shift_Del	C	-	p.D1085fs
LIHC	TCGA-DD-A39Y-01	GRB7	ENST00000394204.1,ENST00000309185.3,ENST00000309156.4,ENST00000394209.2,ENST00000473071.1,ENST00000394211.3,ENST00000578702.1,ENST00000445327.2	chr17	37899524:37899554:37899645:37899723:37900322:37900356,	37899646	37899723	37899662	37899662	Frame_Shift_Del	A	-	p.E201fs
LIHC	TCGA-DD-A39Y-01	GRB7	ENST00000394204.1,ENST00000309185.3,ENST00000309156.4,ENST00000394209.2,ENST00000394211.3,ENST00000445327.2	chr17	37901138:37901237:37901495:37901576:37901674:37901791,	37901496	37901576	37901499	37901499	Frame_Shift_Del	G	-	p.G339fs
LIHC	TCGA-DD-A39Y-01	IKZF3	ENST00000377944.3	chr17	37933903:37934020:37944510:37944627:37947668:37947836,37933903:37934020:37944510:37944627:37985639:37985741,	37944511	37944627	37944522	37944522	Frame_Shift_Del	G	-	p.P233fs
LIHC	TCGA-DD-A39Y-01	IKZF3	ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000535189.1	chr17	37944510:37944627:37947668:37947836:37985639:37985741,37944510:37944627:37947668:37947836:37948925:37949186,	37947669	37947836	37947739	37947739	Frame_Shift_Del	A	-	p.F174fs
LIHC	TCGA-DD-A39Y-01	IKZF3	ENST00000351680.3,ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000346243.3	chr17	37944510:37944627:37948925:37949186:37985639:37985741,37947668:37947836:37948925:37949186:37985639:37985741,	37948926	37949186	37949117	37949117	Frame_Shift_Del	C	-	p.G78fs
LIHC	TCGA-DD-A39Y-01	PSMD3	ENST00000485835.1,ENST00000541736.1,ENST00000415039.3,ENST00000264639.4	chr17	38151206:38151321:38151428:38151548:38151676:38151780,	38151429	38151548	38151479	38151479	Frame_Shift_Del	G	-	p.G383fs
LIHC	TCGA-DD-A39Y-01	TOP2A	ENST00000423485.1	chr17	38551700:38551791:38552534:38552717:38554809:38554893,	38552535	38552717	38552697	38552697	Frame_Shift_Del	T	-	p.K1186fs
LIHC	TCGA-DD-A39Y-01	SMARCE1	ENST00000377808.4,ENST00000400122.3	chr17	38785030:38785245:38786459:38786538:38786965:38787176,	38786460	38786538	38786506	38786506	Frame_Shift_Del	G	-	p.L319fs
LIHC	TCGA-DD-A39Y-01	SMARCE1	ENST00000377808.4,ENST00000400122.3	chr17	38785030:38785245:38786459:38786538:38786965:38787176,	38786460	38786538	38786509	38786509	Frame_Shift_Del	T	-	p.T318fs
LIHC	TCGA-DD-A39Y-01	KRT16	ENST00000301653.4	chr17	39766217:39766281:39766441:39766488:39766582:39766626,	39766442	39766488	39766478	39766478	Frame_Shift_Del	G	-	p.Q432fs
LIHC	TCGA-DD-A39Y-01	FKBP10	ENST00000321562.4,ENST00000455106.1,ENST00000490938.1,ENST00000489591.1,ENST00000544340.1	chr17	39976520:39976713:39977198:39977341:39977905:39978069,	39977199	39977341	39977306	39977306	Frame_Shift_Del	T	-	p.I455fs
LIHC	TCGA-DD-A39Y-01	DHX58	ENST00000586522.1,ENST00000251642.3	chr17	40257035:40257185:40257753:40258007:40259621:40259813,	40257754	40258007	40257938	40257938	Frame_Shift_Del	T	-	p.K356fs
LIHC	TCGA-DD-A39Y-01	KAT2A	ENST00000225916.5,ENST00000465682.1	chr17	40269695:40269832:40269924:40270035:40270314:40270421,	40269925	40270035	40269940	40269940	Frame_Shift_Del	C	-	p.A426fs
LIHC	TCGA-DD-A39Y-01	EZH1	ENST00000592743.1,ENST00000589846.1,ENST00000586103.1,ENST00000585912.1,ENST00000590078.1,ENST00000435174.1,ENST00000415827.2,ENST00000428826.2,ENST00000585893.1,ENST00000585550.1,ENST00000588897.1,ENST00000591330.1	chr17	40858024:40858203:40859975:40860101:40860893:40860934,	40859976	40860101	40860046	40860046	Frame_Shift_Del	G	-	p.P530fs
LIHC	TCGA-DD-A39Y-01	EZH1	ENST00000586089.1,ENST00000585893.1	chr17	40872455:40872467:40874812:40874933:40876322:40876442,40872455:40872467:40874812:40874933:40879652:40879781,	40874813	40874933	40874914	40874914	Frame_Shift_Del	A	-	p.L129fs
LIHC	TCGA-DD-A39Y-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939795:40939917:40940147:40940206:40940307:40940413,	40940148	40940206	40940150	40940150	Frame_Shift_Del	T	-	p.A622fs
LIHC	TCGA-DD-A39Y-01	VAT1	ENST00000590924.1,ENST00000589709.1,ENST00000355653.3,ENST00000420567.3,ENST00000587173.1	chr17	41169858:41169947:41170052:41170223:41170608:41170816,	41170053	41170223	41170062	41170062	Frame_Shift_Del	A	-	p.S253fs
LIHC	TCGA-DD-A39Y-01	RND2	ENST00000587250.2,ENST00000544533.1	chr17	41177976:41178064:41179199:41179309:41180077:41180212,	41179200	41179309	41179280	41179280	Frame_Shift_Del	C	-	p.P91fs
LIHC	TCGA-DD-A39Y-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41243622	41243622	Frame_Shift_Del	T	-	p.N1013fs
LIHC	TCGA-DD-A39Y-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244581	41244581	Frame_Shift_Del	A	-	p.F693fs
LIHC	TCGA-DD-A39Y-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244816	41244816	Frame_Shift_Del	C	-	p.G615fs
LIHC	TCGA-DD-A39Y-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41246109	41246109	Frame_Shift_Del	T	-	p.N184fs
LIHC	TCGA-DD-A39Y-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1	chr17	41327807:41327918:41329952:41330015:41331410:41331429,	41329953	41330015	41329988	41329988	Frame_Shift_Del	A	-	p.I46fs
LIHC	TCGA-DD-A39Y-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41345364:41345655:41346366:41346516:41346980:41347056,	41346367	41346516	41346456	41346456	Frame_Shift_Del	A	-	p.A538fs
LIHC	TCGA-DD-A39Y-01	TMEM106A	ENST00000541594.1,ENST00000592564.1,ENST00000331615.3,ENST00000588659.1,ENST00000588693.1	chr17	41365846:41365910:41367806:41367960:41368467:41368482,	41367807	41367960	41367865	41367865	Frame_Shift_Del	T	-	p.F113fs
LIHC	TCGA-DD-A39Y-01	MPP3	ENST00000398393.1,ENST00000589375.1,ENST00000496503.1,ENST00000398389.4	chr17	41901298:41901373:41903123:41903209:41905118:41905200,	41903124	41903209	41903169	41903169	Frame_Shift_Del	C	-	p.G213fs
LIHC	TCGA-DD-A39Y-01	UBTF	ENST00000302904.4,ENST00000527034.1,ENST00000537550.1,ENST00000529383.1,ENST00000533177.1,ENST00000526094.1,ENST00000436088.1,ENST00000393606.3,ENST00000343638.5	chr17	42293021:42293177:42293273:42293357:42293896:42294072,	42293274	42293357	42293299	42293299	Frame_Shift_Del	T	-	p.N98fs
LIHC	TCGA-DD-A39Y-01	ITGA2B	ENST00000377068.3,ENST00000592226.1,ENST00000353281.4,ENST00000262407.5	chr17	42458246:42458429:42460860:42461072:42461261:42461314,	42460861	42461072	42460966	42460966	Frame_Shift_Del	G	-	p.H369fs
LIHC	TCGA-DD-A39Y-01	CCDC43	ENST00000457422.2,ENST00000588210.1,ENST00000315286.8,ENST00000592333.1	chr17	42759370:42759506:42761239:42761327:42766917:42767093,	42761240	42761327	42761244	42761244	Frame_Shift_Del	T	-	p.K96fs
LIHC	TCGA-DD-A39Y-01	EFTUD2	ENST00000589769.1,ENST00000590977.1	chr17	42929077:42929185:42929776:42929930:42930663:42930758,42929077:42929185:42929776:42929930:42930884:42931003,	42929777	42929930	42929901	42929901	Frame_Shift_Del	G	-	p.P864fs
LIHC	TCGA-DD-A39Y-01	EFTUD2	ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000426333.2	chr17	42945654:42945718:42949813:42949938:42953301:42953468,	42949814	42949938	42949903	42949903	Frame_Shift_Del	G	-	p.P302fs
LIHC	TCGA-DD-A39Y-01	EFTUD2	ENST00000593072.1,ENST00000591382.1,ENST00000589825.1,ENST00000592701.1,ENST00000592576.1,ENST00000426333.2	chr17	42962654:42962702:42963952:42964118:42971784:42971865,	42963953	42964118	42964066	42964066	Frame_Shift_Del	G	-	p.P53fs
LIHC	TCGA-DD-A39Y-01	KIF18B	ENST00000593135.1,ENST00000438933.2,ENST00000587309.1,ENST00000339151.4,ENST00000590129.1	chr17	43011600:43011798:43011874:43011985:43012198:43012303,	43011875	43011985	43011944	43011944	Frame_Shift_Del	C	-	p.G206fs
LIHC	TCGA-DD-A39Y-01	PLCD3	ENST00000322765.5,ENST00000540511.1,ENST00000544333.1	chr17	43190939:43190973:43191617:43191734:43192461:43192496,	43191618	43191734	43191686	43191686	Frame_Shift_Del	G	-	p.P586fs
LIHC	TCGA-DD-A39Y-01	PLCD3	ENST00000412978.2,ENST00000540511.1	chr17	43191617:43191734:43192461:43192611:43192710:43192745,	43192462	43192611	43192482	43192482	Frame_Shift_Del	T	-	p.K564fs
LIHC	TCGA-DD-A39Y-01	ACBD4	ENST00000376955.4	chr17	43215294:43215355:43216387:43216527:43220809:43221217,43215289:43215355:43216387:43216527:43219949:43220326,	43216388	43216527	43216410	43216410	Frame_Shift_Del	G	-	p.R237fs
LIHC	TCGA-DD-A39Y-01	PLEKHM1	ENST00000581448.1	chr17	43530720:43531638:43535534:43535805:43552465:43553092,	43535535	43535805	43535757	43535757	Frame_Shift_Del	C	-	p.E453fs
LIHC	TCGA-DD-A39Y-01	CRHR1	ENST00000339069.5,ENST00000577353.1,ENST00000352855.5,ENST00000293493.7,ENST00000398285.3,ENST00000314537.5,ENST00000347197.5	chr17	43907459:43907580:43907782:43907936:43908245:43908306,	43907783	43907936	43907854	43907854	Frame_Shift_Del	G	-	p.E209fs
LIHC	TCGA-DD-A39Y-01	CRHR1	ENST00000352855.5,ENST00000293493.7,ENST00000398285.3,ENST00000314537.5,ENST00000347197.5	chr17	43910817:43910903:43911079:43911215:43911989:43912207,43910817:43910903:43911079:43911215:43911372:43911414,	43911080	43911215	43911111	43911111	Frame_Shift_Del	C	-	p.P321fs
LIHC	TCGA-DD-A39Y-01	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44060656	44060656	Frame_Shift_Del	C	-	p.G162fs
LIHC	TCGA-DD-A39Y-01	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44060865	44060865	Frame_Shift_Del	C	-	p.S232fs
LIHC	TCGA-DD-A39Y-01	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44061169	44061169	Frame_Shift_Del	G	-	p.E333fs
LIHC	TCGA-DD-A39Y-01	KANSL1	ENST00000393476.3,ENST00000575318.1	chr17	44116024:44116052:44117067:44117250:44127898:44128070,	44117068	44117250	44117213	44117213	Frame_Shift_Del	T	-	p.K686fs
LIHC	TCGA-DD-A39Y-01	NPEPPS	ENST00000544660.1	chr17	45656755:45656877:45662865:45663066:45663513:45663610,	45662866	45663066	45662920	45662920	Frame_Shift_Del	T	-	p.F235fs
LIHC	TCGA-DD-A39Y-01	NPEPPS	ENST00000525048.1	chr17	45679081:45679113:45681280:45681415:45682831:45682918,	45681281	45681415	45681363	45681363	Frame_Shift_Del	T	-	p.L608fs
LIHC	TCGA-DD-A39Y-01	SCRN2	ENST00000581645.1	chr17	45915701:45915816:45915896:45916085:45916156:45916372,	45915897	45916085	45915944	45915944	Frame_Shift_Del	G	-	p.P297fs
LIHC	TCGA-DD-A39Y-01	SCRN2	ENST00000290216.9,ENST00000407215.3,ENST00000584123.1,ENST00000579856.1,ENST00000584567.1,ENST00000582459.1	chr17	45915701:45915816:45915896:45916062:45916156:45916372,	45915897	45916062	45915944	45915944	Frame_Shift_Del	G	-	p.P297fs
LIHC	TCGA-DD-A39Y-01	PNPO	ENST00000544840.1	chr17	46020708:46020796:46021981:46022081:46022924:46022978,46020708:46020796:46021981:46022081:46023226:46023278,	46021982	46022081	46022025	46022025	Frame_Shift_Del	G	-	p.G103fs
LIHC	TCGA-DD-A39Y-01	COPZ2	ENST00000006101.4,ENST00000584666.1,ENST00000581756.1,ENST00000579263.1	chr17	46110051:46110107:46110576:46110668:46111228:46111238,	46110577	46110668	46110647	46110647	Frame_Shift_Del	C	-	p.G95fs
LIHC	TCGA-DD-A39Y-01	SKAP1	ENST00000584924.1,ENST00000581400.2,ENST00000336915.6	chr17	46265204:46265288:46266784:46266862:46423266:46423327,	46266785	46266862	46266791	46266791	Frame_Shift_Del	T	-	p.S118fs
LIHC	TCGA-DD-A39Y-01	CALCOCO2	ENST00000509415.1,ENST00000503463.1,ENST00000416445.2,ENST00000505071.1	chr17	46908417:46908440:46919059:46919249:46925425:46925444,	46919060	46919249	46919091	46919091	Frame_Shift_Del	C	-	p.P9fs
LIHC	TCGA-DD-A39Y-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394474	47394474	Frame_Shift_Del	G	-	p.P205fs
LIHC	TCGA-DD-A39Y-01	SLC35B1	ENST00000502406.1	chr17	47782583:47782643:47783227:47783671:47784326:47784429,	47783228	47783671	47783658	47783658	Frame_Shift_Del	G	-	p.R83fs
LIHC	TCGA-DD-A39Y-01	SLC35B1	ENST00000503334.1,ENST00000507773.1,ENST00000505765.2,ENST00000511657.1	chr17	47783246:47783258:47783565:47783671:47784326:47784429,	47783566	47783671	47783658	47783658	Frame_Shift_Del	G	-	p.R83fs
LIHC	TCGA-DD-A39Y-01	SLC35B1	ENST00000240333.6,ENST00000514907.1,ENST00000508520.1,ENST00000415270.2,ENST00000515850.1,ENST00000435059.2	chr17	47783246:47783258:47783565:47783696:47784326:47784429,	47783566	47783696	47783658	47783658	Frame_Shift_Del	G	-	p.R83fs
LIHC	TCGA-DD-A39Y-01	FAM117A	ENST00000514018.1,ENST00000240364.2,ENST00000505159.1,ENST00000513602.1,ENST00000515240.1	chr17	47797765:47797798:47799860:47799956:47809912:47810082,	47799861	47799956	47799864	47799864	Frame_Shift_Del	T	-	p.K153fs
LIHC	TCGA-DD-A39Y-01	ITGA3	ENST00000544892.1,ENST00000506401.2,ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48148236:48148294:48148674:48148882:48149349:48149546,	48148675	48148882	48148738	48148738	Frame_Shift_Del	C	-	p.A272fs
LIHC	TCGA-DD-A39Y-01	COL1A1	ENST00000225964.5	chr17	48266528:48266636:48266737:48266899:48267039:48267093,	48266738	48266899	48266883	48266883	Frame_Shift_Del	G	-	p.P895fs
LIHC	TCGA-DD-A39Y-01	COL1A1	ENST00000225964.5	chr17	48267219:48267273:48267361:48267469:48267687:48267741,	48267362	48267469	48267399	48267399	Frame_Shift_Del	G	-	p.P841fs
LIHC	TCGA-DD-A39Y-01	COL1A1	ENST00000225964.5	chr17	48273515:48273560:48273674:48273728:48273844:48273889,	48273675	48273728	48273722	48273722	Frame_Shift_Del	G	-	p.R304fs
LIHC	TCGA-DD-A39Y-01	COL1A1	ENST00000225964.5	chr17	48275521:48275566:48275793:48275865:48276586:48276688,	48275794	48275865	48275860	48275860	Frame_Shift_Del	A	-	p.F159fs
LIHC	TCGA-DD-A39Y-01	XYLT2	ENST00000017003.2	chr17	48433871:48434134:48435567:48435901:48437329:48438512,48434478:48434613:48435567:48435901:48437329:48438512,	48435568	48435901	48435865	48435865	Frame_Shift_Del	C	-	p.P747fs
LIHC	TCGA-DD-A39Y-01	MRPL27	ENST00000503633.1,ENST00000225969.4,ENST00000442592.3	chr17	48447392:48447460:48447815:48447947:48450491:48450536,	48447816	48447947	48447866	48447866	Frame_Shift_Del	T	-	p.N41fs
LIHC	TCGA-DD-A39Y-01	ACSF2	ENST00000502667.1,ENST00000504392.1,ENST00000510410.1,ENST00000541920.1,ENST00000427954.2,ENST00000300441.4	chr17	48539896:48539946:48540516:48540612:48540755:48540913,	48540517	48540612	48540581	48540581	Frame_Shift_Del	T	-	p.I311fs
LIHC	TCGA-DD-A39Y-01	RSAD1	ENST00000443328.2	chr17	48556220:48556380:48556989:48557123:48559451:48559589,48556263:48556380:48556989:48557123:48557240:48557279,	48556990	48557123	48557046	48557046	Frame_Shift_Del	C	-	p.R65fs
LIHC	TCGA-DD-A39Y-01	SPATA20	ENST00000503063.1	chr17	48628094:48628278:48628358:48629541:48631611:48631811,	48628359	48629541	48628367	48628367	Frame_Shift_Del	G	-	p.K464fs
LIHC	TCGA-DD-A39Y-01	SPATA20	ENST00000006658.6,ENST00000393244.3,ENST00000504271.1,ENST00000356488.4,ENST00000504334.1,ENST00000503127.1	chr17	48628094:48628278:48628358:48628551:48628871:48629030,	48628359	48628551	48628367	48628367	Frame_Shift_Del	G	-	p.K464fs
LIHC	TCGA-DD-A39Y-01	SPATA20	ENST00000511937.1	chr17	48628094:48628278:48628358:48628583:48628871:48629030,	48628359	48628583	48628367	48628367	Frame_Shift_Del	G	-	p.K464fs
LIHC	TCGA-DD-A39Y-01	SPATA20	ENST00000006658.6,ENST00000393244.3,ENST00000356488.4,ENST00000504334.1,ENST00000511937.1,ENST00000503127.1	chr17	48628871:48629040:48629329:48629541:48631611:48631811,	48629330	48629541	48629463	48629463	Frame_Shift_Del	T	-	p.F627fs
LIHC	TCGA-DD-A39Y-01	SPATA20	ENST00000503063.1	chr17	48628094:48628278:48628358:48629541:48631611:48631811,	48628359	48629541	48629463	48629463	Frame_Shift_Del	T	-	p.F627fs
LIHC	TCGA-DD-A39Y-01	ABCC3	ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48745795:48745878:48746213:48746280:48746500:48746627,	48746214	48746280	48746264	48746264	Frame_Shift_Del	C	-	p.P642fs
LIHC	TCGA-DD-A39Y-01	ABCC3	ENST00000505699.1,ENST00000502426.1,ENST00000503337.1,ENST00000285238.8	chr17	48761309:48761468:48762069:48762236:48764896:48765091,	48762070	48762236	48762175	48762175	Frame_Shift_Del	T	-	p.F1407fs
LIHC	TCGA-DD-A39Y-01	LUC7L3	ENST00000504563.2,ENST00000508045.1,ENST00000240304.1,ENST00000507200.1,ENST00000544170.1,ENST00000505658.1,ENST00000508482.1,ENST00000507503.1,ENST00000393227.2	chr17	48818462:48818607:48819017:48819092:48821066:48821153,	48819018	48819092	48819046	48819046	Frame_Shift_Del	A	-	p.E127fs
LIHC	TCGA-DD-A39Y-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827868	48827868	Frame_Shift_Del	G	-	p.R382fs
LIHC	TCGA-DD-A39Y-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827882	48827882	Frame_Shift_Del	A	-	p.K388fs
LIHC	TCGA-DD-A39Y-01	SPAG9	ENST00000505279.1,ENST00000357122.4	chr17	49133772:49133843:49156944:49157065:49197714:49198095,	49156945	49157065	49156959	49156959	Frame_Shift_Del	T	-	p.N137fs
LIHC	TCGA-DD-A39Y-01	TOM1L1	ENST00000348161.4	chr17	52981073:52981153:52982849:52982928:52991108:52991207,52981073:52981153:52982849:52982928:52990026:52990176,52978237:52978284:52982849:52982928:52990026:52990176,	52982850	52982928	52982878	52982878	Frame_Shift_Del	A	-	p.K58fs
LIHC	TCGA-DD-A39Y-01	TOM1L1	ENST00000572158.1,ENST00000572405.1,ENST00000570977.1,ENST00000575882.1,ENST00000575333.1,ENST00000570371.1,ENST00000536554.1,ENST00000575909.1,ENST00000572576.1,ENST00000576932.1,ENST00000348161.4,ENST00000570965.1,ENST00000445275.2	chr17	52991179:52991234:52991999:52992104:52993106:52993208,	52992000	52992104	52992071	52992071	Frame_Shift_Del	A	-	p.P190fs
LIHC	TCGA-DD-A39Y-01	PCTP	ENST00000417982.2	chr17	53844695:53844813:53848466:53848562:53851016:53851256,	53848467	53848562	53848529	53848529	Frame_Shift_Del	C	-	p.P108fs
LIHC	TCGA-DD-A39Y-01	ANKFN1	ENST00000566473.2,ENST00000318698.2	chr17	54535223:54535340:54543716:54543932:54554848:54555015,	54543717	54543932	54543925	54543925	Frame_Shift_Del	C	-	p.T592fs
LIHC	TCGA-DD-A39Y-01	DGKE	ENST00000284061.3,ENST00000572944.1,ENST00000576869.1	chr17	54912326:54912620:54921379:54921539:54923050:54923170,	54921380	54921539	54921519	54921519	Frame_Shift_Del	A	-	p.K203fs
LIHC	TCGA-DD-A39Y-01	TRIM25	ENST00000572021.1,ENST00000537230.1,ENST00000316881.4	chr17	54972703:54972802:54972881:54972965:54973286:54973313,	54972882	54972965	54972898	54972898	Frame_Shift_Del	T	-	p.K416fs
LIHC	TCGA-DD-A39Y-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448297	56448297	Frame_Shift_Del	C	-	p.R117fs
LIHC	TCGA-DD-A39Y-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492759	56492759	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A39Y-01	SEPT4	ENST00000317268.3,ENST00000579371.1,ENST00000393086.1,ENST00000457347.2,ENST00000426861.1,ENST00000577440.1,ENST00000317256.6,ENST00000584488.1,ENST00000580844.1,ENST00000583114.1,ENST00000583273.1,ENST00000580796.1,ENST00000412945.3	chr17	56598614:56598711:56598905:56599007:56599096:56599214,	56598906	56599007	56598923	56598923	Frame_Shift_Del	G	-	p.Q349fs
LIHC	TCGA-DD-A39Y-01	RAD51C	ENST00000475762.1	chr17	56798106:56798173:56801400:56801461:56809841:56809905,56798106:56798173:56801400:56801461:56809844:56809880,56787219:56787351:56801400:56801461:56809844:56809880,	56801401	56801461	56801444	56801444	Frame_Shift_Del	T	-	p.H316fs
LIHC	TCGA-DD-A39Y-01	TRIM37	ENST00000585287.1	chr17	57076741:57076820:57078958:57079102:57089688:57089768,	57078959	57079102	57078967	57078967	Frame_Shift_Del	G	-	p.P935fs
LIHC	TCGA-DD-A39Y-01	TRIM37	ENST00000262294.7,ENST00000393065.2,ENST00000393066.3	chr17	57076741:57076820:57078958:57079075:57089688:57089768,	57078959	57079075	57078967	57078967	Frame_Shift_Del	G	-	p.P935fs
LIHC	TCGA-DD-A39Y-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57094656:57094785:57105775:57106084:57109256:57109451,	57105776	57106084	57106004	57106004	Frame_Shift_Del	T	-	p.R555fs
LIHC	TCGA-DD-A39Y-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57128574:57128689:57134235:57134415:57138392:57138469,	57134236	57134415	57134293	57134293	Frame_Shift_Del	A	-	p.L259fs
LIHC	TCGA-DD-A39Y-01	TRIM37	ENST00000580620.1,ENST00000262294.7,ENST00000584889.1,ENST00000376149.3,ENST00000580973.1,ENST00000577554.1,ENST00000583387.1,ENST00000393066.3,ENST00000580122.1	chr17	57168660:57168701:57181653:57181755:57183801:57183820,	57181654	57181755	57181707	57181707	Frame_Shift_Del	C	-	p.D24fs
LIHC	TCGA-DD-A39Y-01	PRR11	ENST00000578777.1,ENST00000578542.1,ENST00000580177.1,ENST00000262293.4	chr17	57262414:57262565:57262800:57262923:57270852:57271047,	57262801	57262923	57262913	57262913	Frame_Shift_Del	A	-	p.E131fs
LIHC	TCGA-DD-A39Y-01	GDPD1	ENST00000581140.1,ENST00000579020.1,ENST00000581276.1,ENST00000284116.4	chr17	57326100:57326146:57334482:57334601:57335111:57335201,	57334483	57334601	57334531	57334531	Frame_Shift_Del	T	-	p.V139fs
LIHC	TCGA-DD-A39Y-01	GDPD1	ENST00000581140.1,ENST00000578026.1,ENST00000581276.1,ENST00000284116.4	chr17	57335111:57335201:57344401:57344535:57348296:57348356,	57344402	57344535	57344501	57344501	Frame_Shift_Del	T	-	p.F227fs
LIHC	TCGA-DD-A39Y-01	DHX40	ENST00000584385.1	chr17	57643990:57644070:57647878:57648024:57650476:57650596,57643987:57644155:57647878:57648024:57650476:57650596,57642973:57643144:57647878:57648024:57650476:57650596,	57647879	57648024	57648003	57648003	Frame_Shift_Del	T	-	p.R36fs
LIHC	TCGA-DD-A39Y-01	DHX40	ENST00000425628.3,ENST00000251241.4,ENST00000451169.2	chr17	57657057:57657240:57663513:57663594:57665256:57665414,	57663514	57663594	57663549	57663549	Frame_Shift_Del	T	-	p.I412fs
LIHC	TCGA-DD-A39Y-01	DHX40	ENST00000577549.1,ENST00000425628.3,ENST00000251241.4,ENST00000451169.2	chr17	57682475:57682545:57682806:57683035:57684393:57684619,	57682807	57683035	57682857	57682857	Frame_Shift_Del	G	-	p.L626fs
LIHC	TCGA-DD-A39Y-01	CLTC	ENST00000269122.3,ENST00000393043.1	chr17	57738803:57739004:57741202:57741355:57742147:57742270,	57741203	57741355	57741339	57741339	Frame_Shift_Del	T	-	p.V502fs
LIHC	TCGA-DD-A39Y-01	CLTC	ENST00000579456.1,ENST00000269122.3,ENST00000393043.1	chr17	57759678:57759789:57759989:57760154:57760267:57760375,	57759990	57760154	57760012	57760012	Frame_Shift_Del	A	-	p.E1208fs
LIHC	TCGA-DD-A39Y-01	VMP1	ENST00000539763.1,ENST00000262291.4,ENST00000592619.1,ENST00000591877.1,ENST00000537567.1,ENST00000536180.1,ENST00000545362.1	chr17	57886156:57886237:57889030:57889147:57895072:57895134,	57889031	57889147	57889087	57889087	Frame_Shift_Del	T	-	p.P284fs
LIHC	TCGA-DD-A39Y-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57943969:57944110:57963443:57963591:57970057:57970076,57958298:57958471:57963443:57963591:57970057:57970076,57958298:57958471:57963443:57963591:57968191:57968364,	57963444	57963591	57963473	57963473	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-DD-A39Y-01	RPS6KB1	ENST00000443572.2	chr17	57987922:57987972:57990044:57990165:58003795:58003943,	57990045	57990165	57990104	57990104	Frame_Shift_Del	A	-	p.E84fs
LIHC	TCGA-DD-A39Y-01	HEATR6	ENST00000184956.6,ENST00000585976.1,ENST00000587003.1	chr17	58121033:58121495:58123385:58123590:58124669:58124766,	58123386	58123590	58123522	58123522	Frame_Shift_Del	T	-	p.K946fs
LIHC	TCGA-DD-A39Y-01	USP32	ENST00000590133.1,ENST00000592339.1,ENST00000300896.4	chr17	58286777:58286904:58288373:58288479:58288736:58288875,	58288374	58288479	58288455	58288455	Frame_Shift_Del	C	-	p.G781fs
LIHC	TCGA-DD-A39Y-01	USP32	ENST00000590133.1,ENST00000300896.4,ENST00000393003.3	chr17	58365883:58366043:58372043:58372162:58378959:58379065,	58372044	58372162	58372131	58372131	Frame_Shift_Del	C	-	p.G108fs
LIHC	TCGA-DD-A39Y-01	BCAS3	ENST00000585744.1,ENST00000588462.1,ENST00000390652.5	chr17	59093111:59093262:59104226:59104271:59112026:59112151,	59104227	59104271	59104251	59104251	Frame_Shift_Del	T	-	p.C554fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2	chr17	60032742:60032928:60033040:60033199:60033699:60033842,	60033041	60033199	60033103	60033103	Frame_Shift_Del	G	-	p.P1907fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2	chr17	60043822:60044012:60045395:60045619:60050087:60050249,	60045396	60045619	60045420	60045420	Frame_Shift_Del	A	-	p.F1389fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2	chr17	60043822:60044012:60045395:60045619:60050087:60050249,	60045396	60045619	60045571	60045571	Frame_Shift_Del	C	-	p.G1339fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2	chr17	60043822:60044012:60045395:60045619:60050087:60050249,	60045396	60045619	60045577	60045577	Frame_Shift_Del	A	-	p.L1338fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2	chr17	60045395:60045619:60050087:60050249:60059558:60060475,	60050088	60050249	60050166	60050166	Frame_Shift_Del	T	-	p.R1297fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2	chr17	60050087:60050249:60059558:60060475:60061531:60061728,	60059559	60060475	60059965	60059965	Frame_Shift_Del	T	-	p.K1133fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60087940	60087940	Frame_Shift_Del	A	-	p.F646fs
LIHC	TCGA-DD-A39Y-01	MED13	ENST00000397786.2,ENST00000578132.1	chr17	60106901:60107012:60107211:60107374:60108804:60108999,	60107212	60107374	60107343	60107343	Frame_Shift_Del	T	-	p.K347fs
LIHC	TCGA-DD-A39Y-01	MRC2	ENST00000303375.5	chr17	60754629:60754847:60755864:60756007:60757160:60757263,	60755865	60756007	60755938	60755938	Frame_Shift_Del	C	-	p.A709fs
LIHC	TCGA-DD-A39Y-01	TANC2	ENST00000424789.2,ENST00000389520.4	chr17	61490903:61490995:61492888:61493035:61495667:61495768,	61492889	61493035	61492970	61492970	Frame_Shift_Del	A	-	p.K1284fs
LIHC	TCGA-DD-A39Y-01	CYB561	ENST00000582297.1	chr17	61511838:61511955:61512446:61512604:61513048:61513152,61510505:61510776:61512446:61512604:61513048:61513152,	61512447	61512604	61512572	61512572	Frame_Shift_Del	G	-	p.P162fs
LIHC	TCGA-DD-A39Y-01	CYB561	ENST00000392976.1,ENST00000584031.1	chr17	61513414:61513513:61514706:61514921:61523605:61523652,61513414:61513513:61514706:61514921:61523258:61523545,	61514707	61514921	61514848	61514848	Frame_Shift_Del	G	-	p.Q21fs
LIHC	TCGA-DD-A39Y-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000582678.1	chr17	61559826:61560050:61560389:61560534:61560820:61560919,	61560390	61560534	61560426	61560426	Frame_Shift_Del	A	-	p.E460fs
LIHC	TCGA-DD-A39Y-01	LIMD2	ENST00000578402.1,ENST00000578061.1,ENST00000583211.1,ENST00000582055.1,ENST00000259006.3,ENST00000584645.1,ENST00000580222.1	chr17	61775968:61776071:61776158:61776298:61776387:61776429,	61776159	61776298	61776204	61776204	Frame_Shift_Del	A	-	p.F60fs
LIHC	TCGA-DD-A39Y-01	CCDC47	ENST00000403162.3,ENST00000225726.5,ENST00000582331.2,ENST00000582252.1	chr17	61830139:61830159:61831792:61831878:61833599:61833710,	61831793	61831878	61831827	61831827	Frame_Shift_Del	A	-	p.S334fs
LIHC	TCGA-DD-A39Y-01	DDX42	ENST00000578681.1	chr17	61851566:61851736:61864393:61864630:61869771:61869864,61852467:61852538:61864393:61864630:61869771:61869864,	61864394	61864630	61864425	61864425	Frame_Shift_Del	G	-	p.G7fs
LIHC	TCGA-DD-A39Y-01	DDX42	ENST00000389924.2,ENST00000359353.5,ENST00000578681.1,ENST00000457800.2,ENST00000584010.1,ENST00000583590.1,ENST00000577940.2	chr17	61883894:61884014:61885083:61885260:61886179:61886308,	61885084	61885260	61885129	61885129	Frame_Shift_Del	A	-	p.K298fs
LIHC	TCGA-DD-A39Y-01	DDX42	ENST00000389924.2,ENST00000359353.5,ENST00000578681.1,ENST00000457800.2,ENST00000584010.1,ENST00000583590.1,ENST00000577940.2	chr17	61883894:61884014:61885083:61885260:61886179:61886308,	61885084	61885260	61885237	61885237	Frame_Shift_Del	C	-	p.P334fs
LIHC	TCGA-DD-A39Y-01	SMARCD2	ENST00000584400.1,ENST00000323347.10,ENST00000225742.9,ENST00000448276.2	chr17	61912850:61912927:61914281:61914404:61914554:61914597,	61914282	61914404	61914354	61914354	Frame_Shift_Del	A	-	p.F165fs
LIHC	TCGA-DD-A39Y-01	SMARCD2	ENST00000584400.1,ENST00000323347.10,ENST00000225742.9,ENST00000448276.2	chr17	61912850:61912927:61914281:61914404:61914554:61914597,	61914282	61914404	61914398	61914398	Frame_Shift_Del	C	-	p.E151fs
LIHC	TCGA-DD-A39Y-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62290647	62290647	Frame_Shift_Del	C	-	p.E312fs
LIHC	TCGA-DD-A39Y-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62290972	62290972	Frame_Shift_Del	T	-	p.K202fs
LIHC	TCGA-DD-A39Y-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62291267	62291267	Frame_Shift_Del	G	-	p.P104fs
LIHC	TCGA-DD-A39Y-01	CEP95	ENST00000553956.2,ENST00000577960.1,ENST00000556440.2,ENST00000553412.1	chr17	62517519:62517645:62518819:62519013:62521887:62521952,	62518820	62519013	62518829	62518829	Frame_Shift_Del	T	-	p.L242fs
LIHC	TCGA-DD-A39Y-01	SMURF2	ENST00000585301.1	chr17	62589557:62589691:62594499:62594608:62657946:62658015,	62594500	62594608	62594521	62594521	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A39Y-01	CEP112	ENST00000535342.2,ENST00000582795.1,ENST00000580482.1,ENST00000580694.1,ENST00000392769.2,ENST00000317442.8,ENST00000581739.1,ENST00000537949.1	chr17	63685300:63685336:63739185:63739335:63746779:63746842,	63739186	63739335	63739277	63739277	Frame_Shift_Del	T	-	p.Q839fs
LIHC	TCGA-DD-A39Y-01	CEP112	ENST00000541355.1,ENST00000535342.2,ENST00000583358.1,ENST00000392769.2,ENST00000537949.1	chr17	64025240:64025370:64025986:64026141:64049853:64049997,	64025987	64026141	64026046	64026046	Frame_Shift_Del	T	-	p.K438fs
LIHC	TCGA-DD-A39Y-01	APOH	ENST00000205948.6	chr17	64208156:64208306:64210570:64210768:64212905:64213082,	64210571	64210768	64210639	64210639	Frame_Shift_Del	T	-	p.K306fs
LIHC	TCGA-DD-A39Y-01	APOH	ENST00000205948.6	chr17	64208156:64208306:64210570:64210768:64212905:64213082,	64210571	64210768	64210757	64210757	Frame_Shift_Del	C	-	p.V266fs
LIHC	TCGA-DD-A39Y-01	APOH	ENST00000205948.6,ENST00000581797.1	chr17	64212908:64213085:64216671:64216860:64219815:64219891,	64216672	64216860	64216752	64216752	Frame_Shift_Del	A	-	p.L175fs
LIHC	TCGA-DD-A39Y-01	APOH	ENST00000205948.6,ENST00000581797.1	chr17	64212908:64213085:64216671:64216860:64219815:64219891,	64216672	64216860	64216760	64216760	Frame_Shift_Del	A	-	p.F172fs
LIHC	TCGA-DD-A39Y-01	APOH	ENST00000577982.1	chr17	64222145:64222242:64224137:64224314:64225433:64225535,	64224138	64224314	64224264	64224264	Frame_Shift_Del	T	-	p.T39fs
LIHC	TCGA-DD-A39Y-01	PRKCA	ENST00000284384.6,ENST00000413366.3	chr17	64685068:64685165:64728805:64728943:64731606:64731780,	64728806	64728943	64728928	64728928	Frame_Shift_Del	G	-	p.K347fs
LIHC	TCGA-DD-A39Y-01	HELZ	ENST00000579953.1,ENST00000580168.1,ENST00000358691.5	chr17	65116520:65116728:65119085:65119276:65120078:65120130,	65119086	65119276	65119129	65119129	Frame_Shift_Del	G	-	p.P1196fs
LIHC	TCGA-DD-A39Y-01	HELZ	ENST00000579953.1,ENST00000580168.1,ENST00000358691.5	chr17	65116520:65116728:65119085:65119276:65120078:65120130,	65119086	65119276	65119216	65119216	Frame_Shift_Del	G	-	p.P1167fs
LIHC	TCGA-DD-A39Y-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584008.1	chr17	65337090:65337168:65338301:65338379:65340721:65340896,	65338302	65338379	65338334	65338334	Frame_Shift_Del	T	-	p.R377fs
LIHC	TCGA-DD-A39Y-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584008.1	chr17	65338301:65338379:65340721:65340896:65341860:65341973,	65340722	65340896	65340757	65340757	Frame_Shift_Del	T	-	p.R350fs
LIHC	TCGA-DD-A39Y-01	PITPNC1	ENST00000581322.1,ENST00000335257.6,ENST00000299954.9	chr17	65374270:65374318:65528917:65529066:65548372:65548461,	65528918	65529066	65529059	65529059	Frame_Shift_Del	C	-	p.L64fs
LIHC	TCGA-DD-A39Y-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65899904:65900034:65900817:65900956:65905697:65905877,	65900818	65900956	65900828	65900828	Frame_Shift_Del	A	-	p.Q1021fs
LIHC	TCGA-DD-A39Y-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65906992:65909303:65914829:65914954:65916130:65916259,	65914830	65914954	65914921	65914921	Frame_Shift_Del	A	-	p.K1925fs
LIHC	TCGA-DD-A39Y-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000582467.1,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65916215:65916259:65918955:65919106:65920662:65920705,	65918956	65919106	65919049	65919049	Frame_Shift_Del	A	-	p.E2010fs
LIHC	TCGA-DD-A39Y-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2,ENST00000580465.1	chr17	65936678:65936772:65940265:65940488:65941524:65941687,	65940266	65940488	65940388	65940388	Frame_Shift_Del	A	-	p.A2326fs
LIHC	TCGA-DD-A39Y-01	ARSG	ENST00000448504.2,ENST00000452479.2,ENST00000582154.1	chr17	66352807:66352945:66364688:66364885:66366584:66366665,	66364689	66364885	66364805	66364805	Frame_Shift_Del	G	-	p.W274fs
LIHC	TCGA-DD-A39Y-01	ARSG	ENST00000448504.2,ENST00000452479.2,ENST00000582154.1	chr17	66366584:66366665:66381204:66381313:66391213:66391334,	66381205	66381313	66381251	66381251	Frame_Shift_Del	C	-	p.V343fs
LIHC	TCGA-DD-A39Y-01	ARSG	ENST00000448504.2,ENST00000452479.2,ENST00000582154.1	chr17	66381204:66381313:66391213:66391334:66397500:66397591,	66391214	66391334	66391225	66391225	Frame_Shift_Del	T	-	p.I368fs
LIHC	TCGA-DD-A39Y-01	PRKAR1A	ENST00000536854.2,ENST00000392710.4,ENST00000585981.1,ENST00000358598.2,ENST00000589228.1,ENST00000588188.2,ENST00000586397.1,ENST00000592800.1,ENST00000392711.1	chr17	66522022:66522053:66523980:66524041:66525010:66525132,	66523981	66524041	66524036	66524036	Frame_Shift_Del	T	-	p.I255fs
LIHC	TCGA-DD-A39Y-01	ABCA8	ENST00000269080.2,ENST00000430352.2,ENST00000586539.1	chr17	66864441:66864497:66865840:66865920:66871400:66871541,	66865841	66865920	66865851	66865851	Frame_Shift_Del	T	-	p.K1527fs
LIHC	TCGA-DD-A39Y-01	ABCA8	ENST00000269080.2,ENST00000430352.2,ENST00000586539.1	chr17	66864441:66864497:66865840:66865920:66871400:66871541,	66865841	66865920	66865858	66865858	Frame_Shift_Del	A	-	p.F1526fs
LIHC	TCGA-DD-A39Y-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	66985167:66985259:66985953:66986071:66986977:66987098,	66985954	66986071	66986008	66986008	Frame_Shift_Del	A	-	p.S1301fs
LIHC	TCGA-DD-A39Y-01	ABCA10	ENST00000519732.1	chr17	67161104:67161224:67170421:67170535:67170747:67170918,67161104:67161224:67170421:67170535:67171546:67171654,	67170422	67170535	67170425	67170425	Frame_Shift_Del	A	-	p.F1053fs
LIHC	TCGA-DD-A39Y-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67170421:67170535:67170747:67170918:67171546:67171654,	67170748	67170918	67170804	67170804	Frame_Shift_Del	T	-	p.I998fs
LIHC	TCGA-DD-A39Y-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67170421:67170535:67170747:67170918:67171546:67171654,	67170748	67170918	67170914	67170914	Frame_Shift_Del	T	-	p.N961fs
LIHC	TCGA-DD-A39Y-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67186498:67186618:67187316:67187456:67188703:67188794,	67187317	67187456	67187422	67187422	Frame_Shift_Del	T	-	p.I636fs
LIHC	TCGA-DD-A39Y-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000586995.1,ENST00000588877.1	chr17	67285317:67285437:67286002:67286178:67287356:67287467,	67286003	67286178	67286116	67286116	Frame_Shift_Del	T	-	p.M557fs
LIHC	TCGA-DD-A39Y-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71231737	71231737	Frame_Shift_Del	A	-	p.Q39fs
LIHC	TCGA-DD-A39Y-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232310	71232310	Frame_Shift_Del	T	-	p.I230fs
LIHC	TCGA-DD-A39Y-01	SDK2	ENST00000479356.1,ENST00000388726.3,ENST00000392650.3,ENST00000424778.1,ENST00000410094.1	chr17	71357822:71357984:71361396:71361534:71364545:71364732,	71361397	71361534	71361469	71361469	Frame_Shift_Del	C	-	p.E1745fs
LIHC	TCGA-DD-A39Y-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436514	72436514	Frame_Shift_Del	C	-	p.S245fs
LIHC	TCGA-DD-A39Y-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436578	72436578	Frame_Shift_Del	G	-	p.L266fs
LIHC	TCGA-DD-A39Y-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436590	72436590	Frame_Shift_Del	G	-	p.L270fs
LIHC	TCGA-DD-A39Y-01	NAT9	ENST00000578822.1	chr17	72769747:72769824:72771760:72771991:72772405:72772437,72769714:72769827:72771760:72771991:72772405:72772437,	72771761	72771991	72771763	72771763	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-DD-A39Y-01	NAT9	ENST00000584409.1,ENST00000581136.1,ENST00000583689.1,ENST00000582524.1,ENST00000583476.1,ENST00000582993.1	chr17	72769747:72769824:72771760:72771846:72772405:72772437,72769714:72769827:72771760:72771846:72772405:72772437,	72771761	72771846	72771763	72771763	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-DD-A39Y-01	NAT9	ENST00000578798.1	chr17	72769747:72769824:72771737:72771846:72772405:72772437,	72771738	72771846	72771763	72771763	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-DD-A39Y-01	TMEM104	ENST00000335464.5,ENST00000582330.1,ENST00000582773.1,ENST00000417024.2	chr17	72791150:72791250:72791662:72791771:72815888:72815982,	72791663	72791771	72791736	72791736	Frame_Shift_Del	C	-	p.P201fs
LIHC	TCGA-DD-A39Y-01	FDXR	ENST00000442102.2	chr17	72862567:72862690:72862905:72863127:72868160:72868232,	72862906	72863127	72863052	72863052	Frame_Shift_Del	C	-	p.A85fs
LIHC	TCGA-DD-A39Y-01	HID1	ENST00000425042.2,ENST00000318565.7,ENST00000534480.1	chr17	72954297:72954314:72954421:72954573:72954767:72954858,	72954422	72954573	72954520	72954520	Frame_Shift_Del	C	-	p.E432fs
LIHC	TCGA-DD-A39Y-01	HID1	ENST00000425042.2,ENST00000525128.1,ENST00000534480.1	chr17	72959865:72960005:72960577:72960727:72968685:72968811,	72960578	72960727	72960646	72960646	Frame_Shift_Del	C	-	p.V50fs
LIHC	TCGA-DD-A39Y-01	NT5C	ENST00000578095.1,ENST00000577523.1,ENST00000582160.1,ENST00000245552.2	chr17	73126567:73126732:73126847:73126962:73127139:73127200,73126665:73126737:73126847:73126962:73127059:73127176,73126665:73126737:73126847:73126962:73127139:73127200,	73126848	73126962	73126881	73126881	Frame_Shift_Del	C	-	p.D140fs
LIHC	TCGA-DD-A39Y-01	NUP85	ENST00000581104.1,ENST00000447371.2	chr17	73209170:73209214:73211848:73211918:73214279:73214401,73209170:73209214:73211848:73211918:73221197:73221332,	73211849	73211918	73211898	73211898	Frame_Shift_Del	T	-	p.F25fs
LIHC	TCGA-DD-A39Y-01	NUP85	ENST00000583877.1	chr17	73214387:73214401:73221218:73221332:73221436:73221559,	73221219	73221332	73221299	73221299	Frame_Shift_Del	G	-	p.M65fs
LIHC	TCGA-DD-A39Y-01	NUP85	ENST00000581104.1,ENST00000447371.2	chr17	73214387:73214401:73221197:73221332:73221436:73221559,73211895:73211918:73221197:73221332:73221436:73221559,	73221198	73221332	73221299	73221299	Frame_Shift_Del	G	-	p.M65fs
LIHC	TCGA-DD-A39Y-01	GRB2	ENST00000316615.5,ENST00000316804.5	chr17	73328780:73328878:73389631:73389846:73401569:73401734,	73389632	73389846	73389643	73389643	Frame_Shift_Del	C	-	p.D23fs
LIHC	TCGA-DD-A39Y-01	GRB2	ENST00000316615.5,ENST00000316804.5	chr17	73328780:73328878:73389631:73389846:73401569:73401734,	73389632	73389846	73389649	73389649	Frame_Shift_Del	T	-	p.R21fs
LIHC	TCGA-DD-A39Y-01	RECQL5	ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73624751:73624842:73625013:73625555:73625787:73625922,	73625014	73625555	73625290	73625290	Frame_Shift_Del	C	-	p.G738fs
LIHC	TCGA-DD-A39Y-01	RECQL5	ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73624751:73624842:73625013:73625555:73625787:73625922,	73625014	73625555	73625303	73625303	Frame_Shift_Del	T	-	p.S736fs
LIHC	TCGA-DD-A39Y-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73744921:73745126:73746191:73746349:73746760:73746871,	73746192	73746349	73746239	73746239	Frame_Shift_Del	C	-	p.P1123fs
LIHC	TCGA-DD-A39Y-01	UNK	ENST00000293218.3,ENST00000589666.1,ENST00000586217.1	chr17	73808535:73808666:73809158:73809294:73809841:73809959,	73809159	73809294	73809206	73809206	Frame_Shift_Del	C	-	p.P301fs
LIHC	TCGA-DD-A39Y-01	UNK	ENST00000293218.3,ENST00000589666.1	chr17	73815819:73815866:73816000:73816189:73818557:73818739,	73816001	73816189	73816156	73816156	Frame_Shift_Del	T	-	p.F678fs
LIHC	TCGA-DD-A39Y-01	WBP2	ENST00000586257.1,ENST00000585462.1,ENST00000591831.1,ENST00000591399.1,ENST00000589642.1,ENST00000254806.3,ENST00000593002.1,ENST00000588373.1,ENST00000344296.4	chr17	73843655:73843690:73843876:73844011:73844650:73844743,	73843877	73844011	73843882	73843882	Frame_Shift_Del	G	-	p.P177fs
LIHC	TCGA-DD-A39Y-01	TRIM65	ENST00000269383.3	chr17	73887357:73887428:73888091:73888266:73888347:73888384,73887893:73887959:73888091:73888266:73888347:73888384,	73888092	73888266	73888244	73888244	Frame_Shift_Del	G	-	p.P256fs
LIHC	TCGA-DD-A39Y-01	ACOX1	ENST00000301608.4	chr17	73956295:73956456:73969705:73969866:73974614:73974774,73953595:73953647:73969705:73969866:73974614:73974774,	73969706	73969866	73969776	73969776	Frame_Shift_Del	T	-	p.K120fs
LIHC	TCGA-DD-A39Y-01	ACOX1	ENST00000301608.4	chr17	73956295:73956456:73969705:73969866:73974614:73974774,73953595:73953647:73969705:73969866:73974614:73974774,	73969706	73969866	73969815	73969815	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-DD-A39Y-01	TEN1	ENST00000416485.1,ENST00000397640.1	chr17	73982267:73982365:73987546:73987704:73996221:73996602,	73987547	73987704	73987632	73987632	Frame_Shift_Del	A	-	p.K60fs
LIHC	TCGA-DD-A39Y-01	TEN1	ENST00000588202.1	chr17	73982267:73982365:73987546:73987658:73996221:73996602,	73987547	73987658	73987632	73987632	Frame_Shift_Del	A	-	p.K60fs
LIHC	TCGA-DD-A39Y-01	CDK3	ENST00000425876.2,ENST00000448471.1	chr17	73998591:73998693:73999275:73999479:74001378:74002078,	73999276	73999479	73999284	73999284	Frame_Shift_Del	A	-	p.R199fs
LIHC	TCGA-DD-A39Y-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74288949	74288949	Frame_Shift_Del	A	-	p.L454fs
LIHC	TCGA-DD-A39Y-01	UBE2O	ENST00000319380.7,ENST00000587127.1	chr17	74387836:74387894:74387990:74388194:74391805:74391942,	74387991	74388194	74388089	74388089	Frame_Shift_Del	G	-	p.H1018fs
LIHC	TCGA-DD-A39Y-01	RHBDF2	ENST00000389760.4,ENST00000587640.1,ENST00000591885.1,ENST00000313080.4	chr17	74472911:74473106:74473261:74473380:74473738:74473813,	74473262	74473380	74473282	74473282	Frame_Shift_Del	G	-	p.P300fs
LIHC	TCGA-DD-A39Y-01	RHBDF2	ENST00000592123.1,ENST00000313080.4	chr17	74475293:74475359:74475814:74476023:74477456:74477609,	74475815	74476023	74475952	74475952	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A39Y-01	CYGB	ENST00000590175.1,ENST00000589145.1,ENST00000293230.5	chr17	74524615:74524693:74527060:74527224:74527541:74527773,	74527061	74527224	74527072	74527072	Frame_Shift_Del	G	-	p.P176fs
LIHC	TCGA-DD-A39Y-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000565675.1	chr17	74864905:74865179:74868932:74869045:74878232:74878380,	74868933	74869045	74868972	74868972	Frame_Shift_Del	C	-	p.F36fs
LIHC	TCGA-DD-A39Y-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000565675.1	chr17	74864905:74865179:74868932:74869045:74878232:74878380,	74868933	74869045	74869014	74869014	Frame_Shift_Del	G	-	p.L50fs
LIHC	TCGA-DD-A39Y-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189579	75189579	Frame_Shift_Del	A	-	p.E141fs
LIHC	TCGA-DD-A39Y-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189626	75189626	Frame_Shift_Del	A	-	p.K158fs
LIHC	TCGA-DD-A39Y-01	SYNGR2	ENST00000589168.1	chr17	76164780:76164796:76166897:76167135:76167590:76167730,76164698:76164796:76166897:76167135:76167819:76168023,	76166898	76167135	76167021	76167021	Frame_Shift_Del	G	-	p.G75fs
LIHC	TCGA-DD-A39Y-01	SYNGR2	ENST00000589183.1	chr17	76164698:76164796:76166692:76167135:76167819:76168023,	76166693	76167135	76167021	76167021	Frame_Shift_Del	G	-	p.G75fs
LIHC	TCGA-DD-A39Y-01	BIRC5	ENST00000590925.2,ENST00000350051.3	chr17	76210465:76210508:76210760:76210870:76212744:76212862,	76210761	76210870	76210865	76210865	Frame_Shift_Del	C	-	p.D72fs
LIHC	TCGA-DD-A39Y-01	PGS1	ENST00000589426.1	chr17	76396911:76396936:76399648:76400170:76410959:76411108,76396911:76396936:76399648:76400170:76411032:76411108,	76399649	76400170	76399903	76399903	Frame_Shift_Del	G	-	p.G379fs
LIHC	TCGA-DD-A39Y-01	CYTH1	ENST00000361101.4,ENST00000446868.3,ENST00000589296.1,ENST00000591455.1	chr17	76704278:76704343:76705731:76705814:76778283:76778371,	76705732	76705814	76705756	76705756	Frame_Shift_Del	T	-	p.K27fs
LIHC	TCGA-DD-A39Y-01	USP36	ENST00000588086.1,ENST00000312010.6,ENST00000542802.3,ENST00000589225.1	chr17	76798542:76798617:76799466:76800060:76802237:76802368,	76799467	76800060	76799861	76799861	Frame_Shift_Del	G	-	p.Q806fs
LIHC	TCGA-DD-A39Y-01	LGALS3BP	ENST00000589527.1,ENST00000588508.1,ENST00000587251.1,ENST00000262776.3	chr17	76968638:76968786:76969051:76969304:76970769:76970854,	76969052	76969304	76969167	76969167	Frame_Shift_Del	G	-	p.H172fs
LIHC	TCGA-DD-A39Y-01	LGALS3BP	ENST00000588198.1	chr17	76968638:76968786:76969051:76969425:76970769:76970854,	76969052	76969425	76969167	76969167	Frame_Shift_Del	G	-	p.H172fs
LIHC	TCGA-DD-A39Y-01	ENPP7	ENST00000576512.1,ENST00000328313.5	chr17	77709339:77709468:77710839:77711059:77711714:77711861,	77710840	77711059	77710876	77710876	Frame_Shift_Del	T	-	p.F355fs
LIHC	TCGA-DD-A39Y-01	GAA	ENST00000577106.1	chr17	78075609:78075689:78078353:78078931:78079547:78079627,78075609:78075724:78078353:78078931:78079547:78079627,	78078354	78078931	78078637	78078637	Frame_Shift_Del	C	-	p.V84fs
LIHC	TCGA-DD-A39Y-01	GAA	ENST00000572803.1,ENST00000302262.3,ENST00000390015.3	chr17	78085781:78085899:78086376:78086510:78086674:78086747,	78086377	78086510	78086394	78086394	Frame_Shift_Del	G	-	p.R591fs
LIHC	TCGA-DD-A39Y-01	SGSH	ENST00000534910.1,ENST00000573150.1,ENST00000576941.1,ENST00000572257.1,ENST00000570923.1,ENST00000326317.6	chr17	78186003:78186073:78187602:78187684:78187970:78188127,	78187603	78187684	78187667	78187667	Frame_Shift_Del	G	-	p.P227fs
LIHC	TCGA-DD-A39Y-01	RNF213	ENST00000336301.6,ENST00000508628.2,ENST00000582970.1,ENST00000558116.1	chr17	78343567:78343667:78345673:78345785:78346320:78346534,	78345674	78345785	78345719	78345719	Frame_Shift_Del	A	-	p.L4157fs
LIHC	TCGA-DD-A39Y-01	RPTOR	ENST00000575542.1,ENST00000306801.3,ENST00000577161.1	chr17	78857580:78857772:78858807:78858948:78865519:78865637,	78858808	78858948	78858850	78858850	Frame_Shift_Del	A	-	p.N629fs
LIHC	TCGA-DD-A39Y-01	AATK	ENST00000374792.2,ENST00000417379.1,ENST00000572339.1,ENST00000326724.4	chr17	79098761:79098814:79100226:79100360:79101382:79101470,	79100227	79100360	79100300	79100300	Frame_Shift_Del	G	-	p.R228fs
LIHC	TCGA-DD-A39Y-01	SLC38A10	ENST00000288439.5,ENST00000542075.1,ENST00000374759.3	chr17	79246315:79246427:79249768:79249951:79250830:79250933,	79249769	79249951	79249795	79249795	Frame_Shift_Del	G	-	p.L296fs
LIHC	TCGA-DD-A39Y-01	NPLOC4	ENST00000574897.1,ENST00000539314.1	chr17	79577235:79577284:79580343:79580520:79589191:79589304,79575753:79575848:79580343:79580520:79589191:79589304,	79580344	79580520	79580436	79580436	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-DD-A39Y-01	NPLOC4	ENST00000574897.1,ENST00000539314.1	chr17	79577235:79577284:79580343:79580520:79589191:79589304,79575753:79575848:79580343:79580520:79589191:79589304,	79580344	79580520	79580443	79580443	Frame_Shift_Del	C	-	p.G96fs
LIHC	TCGA-DD-A39Y-01	CCDC137	ENST00000571916.1	chr17	79634798:79634892:79637259:79637483:79638773:79638856,	79637260	79637483	79637305	79637305	Frame_Shift_Del	C	-	p.P107fs
LIHC	TCGA-DD-A39Y-01	CCDC137	ENST00000575223.1,ENST00000329214.8	chr17	79634798:79634892:79637254:79637483:79638773:79638856,	79637255	79637483	79637305	79637305	Frame_Shift_Del	C	-	p.P107fs
LIHC	TCGA-DD-A39Y-01	HGS	ENST00000576498.1,ENST00000572392.1,ENST00000329138.4,ENST00000576393.1	chr17	79651062:79651133:79652634:79652719:79653341:79653417,	79652635	79652719	79652680	79652680	Frame_Shift_Del	T	-	p.I28fs
LIHC	TCGA-DD-A39Y-01	HGS	ENST00000575058.1,ENST00000329138.4	chr17	79660704:79660782:79660899:79660995:79661844:79661883,	79660900	79660995	79660945	79660945	Frame_Shift_Del	C	-	p.P296fs
LIHC	TCGA-DD-A39Y-01	P4HB	ENST00000576052.1	chr17	79805202:79805223:79817054:79817263:79818202:79818354,	79817055	79817263	79817227	79817227	Frame_Shift_Del	G	-	p.P61fs
LIHC	TCGA-DD-A39Y-01	ARHGDIA	ENST00000269321.7,ENST00000541078.2,ENST00000584461.1,ENST00000580685.1,ENST00000583868.1,ENST00000400721.4,ENST00000583111.1,ENST00000579121.1	chr17	79827205:79827282:79827417:79827501:79827616:79827629,	79827418	79827501	79827497	79827497	Frame_Shift_Del	G	-	p.P65fs
LIHC	TCGA-DD-A39Y-01	SIRT7	ENST00000577065.1,ENST00000575360.1,ENST00000328666.6,ENST00000572350.1,ENST00000536038.1,ENST00000571915.1,ENST00000572902.1	chr17	79872318:79872406:79872479:79872578:79873315:79873388,	79872480	79872578	79872542	79872542	Frame_Shift_Del	G	-	p.H173fs
LIHC	TCGA-DD-A39Y-01	ASPSCR1	ENST00000344865.6,ENST00000582355.2,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000306739.4	chr17	79953867:79953941:79954295:79954722:79966912:79966915,	79954296	79954722	79954545	79954545	Frame_Shift_Del	G	-	p.L252fs
LIHC	TCGA-DD-A39Y-01	ASPSCR1	ENST00000582355.2,ENST00000583744.1,ENST00000577733.1,ENST00000306729.7,ENST00000581608.1,ENST00000584454.1,ENST00000583142.1,ENST00000585140.1,ENST00000580534.1,ENST00000578361.1,ENST00000306739.4,ENST00000582404.1	chr17	79974351:79974403:79974675:79974745:79974816:79974913,	79974676	79974745	79974690	79974690	Frame_Shift_Del	C	-	p.P568fs
LIHC	TCGA-DD-A39Y-01	GPS1	ENST00000578552.1,ENST00000584460.1,ENST00000355130.2,ENST00000320548.4,ENST00000306823.6,ENST00000392358.2	chr17	80014161:80014267:80014345:80014426:80014504:80014642,	80014346	80014426	80014374	80014374	Frame_Shift_Del	C	-	p.A395fs
LIHC	TCGA-DD-A39Y-01	FASN	ENST00000306749.2	chr17	80050572:80050688:80050772:80050895:80051094:80051295,	80050773	80050895	80050816	80050816	Frame_Shift_Del	G	-	p.T245fs
LIHC	TCGA-DD-A39Y-01	CSNK1D	ENST00000314028.6,ENST00000403276.3,ENST00000579316.1,ENST00000392334.2,ENST00000584472.1,ENST00000398519.5	chr17	80213313:80213453:80223561:80223672:80231181:80231245,	80223562	80223672	80223619	80223619	Frame_Shift_Del	T	-	p.T44fs
LIHC	TCGA-DD-A39Y-01	FOXK2	ENST00000473637.2,ENST00000531030.1,ENST00000526383.2,ENST00000570585.1,ENST00000335255.5	chr17	80521229:80521424:80525929:80526077:80529599:80529746,	80525930	80526077	80526046	80526046	Frame_Shift_Del	A	-	p.E244fs
LIHC	TCGA-DD-A39Y-01	FOXK2	ENST00000473637.2,ENST00000531030.1,ENST00000526383.2,ENST00000335255.5	chr17	80525929:80526077:80529599:80529746:80540616:80540790,	80529600	80529746	80529705	80529705	Frame_Shift_Del	A	-	p.K290fs
LIHC	TCGA-DD-A39Y-01	FOXK2	ENST00000473637.2,ENST00000335255.5	chr17	80541888:80542064:80543779:80544076:80544938:80545148,	80543780	80544076	80544026	80544026	Frame_Shift_Del	C	-	p.A509fs
LIHC	TCGA-DD-A39Y-01	WDR45B	ENST00000573656.1,ENST00000573616.1,ENST00000572583.1	chr17	80576939:80577004:80579484:80579675:80583264:80583359,80576918:80576970:80579484:80579675:80583264:80583359,	80579485	80579675	80579569	80579569	Frame_Shift_Del	G	-	p.P178fs
LIHC	TCGA-DD-A39Y-01	THOC1	ENST00000579232.1,ENST00000582313.1,ENST00000580038.1,ENST00000261600.6	chr18	259681:259730:260185:260304:264025:264092,	260186	260304	260205	260205	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A39Y-01	CLUL1	ENST00000338387.7,ENST00000400606.2,ENST00000540035.1,ENST00000579494.1	chr18	641471:641541:644909:645097:649897:650175,	644910	645097	645082	645082	Frame_Shift_Del	A	-	p.E486fs
LIHC	TCGA-DD-A39Y-01	ENOSF1	ENST00000251101.7,ENST00000581475.1,ENST00000585128.2,ENST00000340116.7,ENST00000584453.1,ENST00000580982.1,ENST00000583973.1,ENST00000584646.1,ENST00000582745.1,ENST00000584259.2,ENST00000319815.6,ENST00000383578.3	chr18	675320:675402:677344:677444:677742:677836,	677345	677444	677391	677391	Frame_Shift_Del	G	-	p.L138fs
LIHC	TCGA-DD-A39Y-01	ENOSF1	ENST00000584453.1	chr18	690566:690631:691067:691106:691203:691276,690566:690631:691067:691106:693881:693908,	691068	691106	691075	691075	Frame_Shift_Del	T	-	p.K94fs
LIHC	TCGA-DD-A39Y-01	METTL4	ENST00000319888.6	chr18	2544193:2544285:2544651:2544758:2547353:2547528,2538451:2539144:2544651:2544758:2547353:2547528,	2544652	2544758	2544668	2544668	Frame_Shift_Del	T	-	p.T389fs
LIHC	TCGA-DD-A39Y-01	MYOM1	ENST00000356443.4,ENST00000400569.3	chr18	3126698:3126895:3129229:3129517:3131372:3131494,	3129230	3129517	3129251	3129251	Frame_Shift_Del	G	-	p.L925fs
LIHC	TCGA-DD-A39Y-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000400111.3,ENST00000545076.1,ENST00000427684.2,ENST00000542652.2	chr18	5393178:5393477:5395065:5395146:5395607:5395706,5394681:5394792:5395065:5395146:5395607:5395706,	5395066	5395146	5395089	5395089	Frame_Shift_Del	C	-	p.D1044fs
LIHC	TCGA-DD-A39Y-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6080879:6080950:6093353:6093527:6138192:6138295,	6093354	6093527	6093409	6093409	Frame_Shift_Del	T	-	p.S440fs
LIHC	TCGA-DD-A39Y-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000583809.1,ENST00000581231.1,ENST00000583054.1,ENST00000317931.7	chr18	6263945:6264037:6301901:6301956:6311552:6311655,	6301902	6301956	6301937	6301937	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-DD-A39Y-01	ARHGAP28	ENST00000584287.1,ENST00000577524.1	chr18	6851032:6851125:6859829:6859896:6868148:6868230,	6859830	6859896	6859858	6859858	Frame_Shift_Del	A	-	p.K71fs
LIHC	TCGA-DD-A39Y-01	ARHGAP28	ENST00000532996.1,ENST00000314319.3,ENST00000400091.2,ENST00000418986.1,ENST00000581099.1,ENST00000383472.4,ENST00000262227.3,ENST00000419673.2	chr18	6851032:6851125:6859806:6859896:6868148:6868230,	6859807	6859896	6859858	6859858	Frame_Shift_Del	A	-	p.K71fs
LIHC	TCGA-DD-A39Y-01	PTPRM	ENST00000444013.1,ENST00000578571.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	8076452:8076562:8085668:8085870:8088746:8088849,	8085669	8085870	8085765	8085765	Frame_Shift_Del	T	-	p.F551fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254634	9254634	Frame_Shift_Del	A	-	p.K435fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255261	9255261	Frame_Shift_Del	A	-	p.K644fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255362	9255362	Frame_Shift_Del	T	-	p.N676fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256143	9256143	Frame_Shift_Del	A	-	p.K938fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257212	9257212	Frame_Shift_Del	T	-	p.I1293fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9254208:9258929:9263787:9263886:9275521:9275665,	9263788	9263886	9263828	9263828	Frame_Shift_Del	T	-	p.L1879fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9263787:9263886:9275521:9275665:9279546:9279642,	9275522	9275665	9275595	9275595	Frame_Shift_Del	A	-	p.Q1923fs
LIHC	TCGA-DD-A39Y-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9275521:9275665:9279546:9279642:9280938:9283757,	9279547	9279642	9279634	9279634	Frame_Shift_Del	A	-	p.K1976fs
LIHC	TCGA-DD-A39Y-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9577061:9577189:9583114:9583273:9584512:9584578,	9583115	9583273	9583260	9583260	Frame_Shift_Del	A	-	p.F258fs
LIHC	TCGA-DD-A39Y-01	VAPA	ENST00000584796.1,ENST00000583475.1,ENST00000400000.2,ENST00000583879.1	chr18	9944920:9945055:9950391:9950565:9954049:9954140,9936982:9937063:9950391:9950565:9954049:9954140,	9950392	9950565	9950504	9950504	Frame_Shift_Del	A	-	p.E178fs
LIHC	TCGA-DD-A39Y-01	MPPE1	ENST00000592977.1,ENST00000592331.1,ENST00000588072.1,ENST00000589731.1,ENST00000317251.4,ENST00000592894.1,ENST00000496196.1,ENST00000344987.7,ENST00000309976.9,ENST00000317235.7,ENST00000399978.2,ENST00000592447.1	chr18	11886915:11887024:11888667:11888742:11889385:11889414,	11888668	11888742	11888727	11888727	Frame_Shift_Del	T	-	p.K170fs
LIHC	TCGA-DD-A39Y-01	AFG3L2	ENST00000269143.3	chr18	12367274:12367381:12370847:12370925:12371590:12371690,	12370848	12370925	12370885	12370885	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-DD-A39Y-01	SPIRE1	ENST00000410092.3,ENST00000449797.1,ENST00000409402.4,ENST00000462226.1,ENST00000497844.2,ENST00000453447.2,ENST00000383356.2	chr18	12535476:12535600:12546672:12546903:12635060:12635095,	12546673	12546903	12546819	12546819	Frame_Shift_Del	G	-	p.L153fs
LIHC	TCGA-DD-A39Y-01	PSMG2	ENST00000317615.6,ENST00000585331.2,ENST00000586445.1,ENST00000590217.1	chr18	12706548:12706720:12712700:12712759:12718515:12718634,	12712701	12712759	12712749	12712749	Frame_Shift_Del	T	-	p.I93fs
LIHC	TCGA-DD-A39Y-01	PSMG2	ENST00000317615.6,ENST00000585331.2,ENST00000586445.1,ENST00000590217.1	chr18	12718515:12718634:12720508:12720682:12724497:12724519,	12720509	12720682	12720592	12720592	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-DD-A39Y-01	PSMG2	ENST00000317615.6,ENST00000585331.2,ENST00000586445.1,ENST00000590217.1	chr18	12718515:12718634:12720508:12720682:12724497:12724519,	12720509	12720682	12720662	12720662	Frame_Shift_Del	A	-	p.T187fs
LIHC	TCGA-DD-A39Y-01	PTPN2	ENST00000309660.5,ENST00000353319.4,ENST00000591497.1,ENST00000327283.3	chr18	12814323:12814354:12817154:12817364:12830941:12831040,12814323:12814354:12817154:12817364:12825808:12825943,	12817155	12817364	12817335	12817335	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-DD-A39Y-01	FAM210A	ENST00000322247.3,ENST00000592976.1,ENST00000402563.1	chr18	13666492:13666712:13671860:13671972:13681603:13682104,	13671861	13671972	13671904	13671904	Frame_Shift_Del	T	-	p.N181fs
LIHC	TCGA-DD-A39Y-01	FAM210A	ENST00000592976.1,ENST00000402563.1	chr18	13666492:13666712:13681603:13682104:13726327:13726504,13671910:13671972:13681603:13682104:13687741:13687881,13671920:13671972:13681603:13682104:13726327:13726504,	13681604	13682104	13681620	13681620	Frame_Shift_Del	A	-	p.Y154fs
LIHC	TCGA-DD-A39Y-01	RNMT	ENST00000383314.2,ENST00000589866.1,ENST00000592764.1	chr18	13730625:13730754:13731474:13731933:13734462:13734598,	13731475	13731933	13731590	13731590	Frame_Shift_Del	A	-	p.E25fs
LIHC	TCGA-DD-A39Y-01	RNMT	ENST00000383314.2,ENST00000589866.1,ENST00000592764.1	chr18	13730625:13730754:13731474:13731933:13734462:13734598,	13731475	13731933	13731617	13731617	Frame_Shift_Del	A	-	p.E34fs
LIHC	TCGA-DD-A39Y-01	RNMT	ENST00000383314.2,ENST00000589866.1,ENST00000592764.1	chr18	13730625:13730754:13731474:13731933:13734462:13734598,	13731475	13731933	13731783	13731783	Frame_Shift_Del	C	-	p.V89fs
LIHC	TCGA-DD-A39Y-01	ANKRD30B	ENST00000320584.8,ENST00000358984.4	chr18	14848714:14848928:14850212:14850381:14851507:14852479,	14850213	14850381	14850266	14850266	Frame_Shift_Del	A	-	p.E1031fs
LIHC	TCGA-DD-A39Y-01	ANKRD30B	ENST00000320584.8,ENST00000358984.4	chr18	14848714:14848928:14850212:14850381:14851507:14852479,	14850213	14850381	14850295	14850295	Frame_Shift_Del	A	-	p.K1042fs
LIHC	TCGA-DD-A39Y-01	ROCK1	ENST00000399799.2	chr18	18533538:18533746:18534743:18535005:18535127:18535206,	18534744	18535005	18534827	18534827	Frame_Shift_Del	G	-	p.P1257fs
LIHC	TCGA-DD-A39Y-01	ROCK1	ENST00000399799.2	chr18	18533538:18533746:18534743:18535005:18535127:18535206,	18534744	18535005	18534973	18534973	Frame_Shift_Del	T	-	p.K1208fs
LIHC	TCGA-DD-A39Y-01	ROCK1	ENST00000399799.2,ENST00000583556.1	chr18	18550308:18550474:18559870:18559965:18562723:18562744,	18559871	18559965	18559877	18559877	Frame_Shift_Del	T	-	p.N883fs
LIHC	TCGA-DD-A39Y-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629105	18629105	Frame_Shift_Del	A	-	p.F121fs
LIHC	TCGA-DD-A39Y-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154128	19154128	Frame_Shift_Del	T	-	p.K226fs
LIHC	TCGA-DD-A39Y-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154286	19154286	Frame_Shift_Del	T	-	p.K173fs
LIHC	TCGA-DD-A39Y-01	RBBP8	ENST00000399725.2,ENST00000582354.1,ENST00000399722.2,ENST00000327155.5,ENST00000399721.2,ENST00000360790.5	chr18	20529580:20529676:20548768:20548881:20555115:20555182,	20548769	20548881	20548821	20548821	Frame_Shift_Del	A	-	p.K102fs
LIHC	TCGA-DD-A39Y-01	RBBP8	ENST00000585177.1,ENST00000399725.2,ENST00000399722.2,ENST00000327155.5,ENST00000399721.2,ENST00000360790.5	chr18	20562180:20562356:20564848:20564953:20569183:20569281,	20564849	20564953	20564900	20564900	Frame_Shift_Del	A	-	p.E219fs
LIHC	TCGA-DD-A39Y-01	RBBP8	ENST00000399725.2,ENST00000399722.2,ENST00000327155.5	chr18	20577582:20577697:20581548:20581692:20586325:20586395,	20581549	20581692	20581634	20581634	Frame_Shift_Del	T	-	p.S743fs
LIHC	TCGA-DD-A39Y-01	RBBP8	ENST00000360790.5	chr18	20577582:20577697:20581533:20581692:20586325:20586395,	20581534	20581692	20581634	20581634	Frame_Shift_Del	T	-	p.S743fs
LIHC	TCGA-DD-A39Y-01	TMEM241	ENST00000497608.1,ENST00000450466.2,ENST00000582336.1,ENST00000383233.3,ENST00000581444.1	chr18	20936593:20936627:20951385:20951434:20953675:20953727,20948678:20948714:20951385:20951434:20953675:20953727,20950179:20950225:20951385:20951434:20953675:20953727,	20951386	20951434	20951413	20951413	Frame_Shift_Del	A	-	p.W153fs
LIHC	TCGA-DD-A39Y-01	RIOK3	ENST00000581585.1,ENST00000577501.1,ENST00000339486.3,ENST00000581302.1	chr18	21047362:21047490:21053392:21053590:21054911:21055071,	21053393	21053590	21053560	21053560	Frame_Shift_Del	G	-	p.W328fs
LIHC	TCGA-DD-A39Y-01	LAMA3	ENST00000588004.1	chr18	21529992:21530123:21531647:21531741:21532953:21533073,21529992:21530123:21531647:21531741:21534466:21534612,	21531648	21531741	21531662	21531662	Frame_Shift_Del	G	-	p.M3219fs
LIHC	TCGA-DD-A39Y-01	TTC39C	ENST00000304621.6,ENST00000317571.3	chr18	21645975:21646104:21649120:21649235:21660548:21660737,	21649121	21649235	21649140	21649140	Frame_Shift_Del	C	-	p.A122fs
LIHC	TCGA-DD-A39Y-01	TTC39C	ENST00000304621.6,ENST00000579214.1,ENST00000317571.3,ENST00000540918.2	chr18	21694517:21694611:21698088:21698196:21703797:21703901,	21698089	21698196	21698147	21698147	Frame_Shift_Del	A	-	p.L72fs
LIHC	TCGA-DD-A39Y-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21736217	21736217	Frame_Shift_Del	A	-	p.E153fs
LIHC	TCGA-DD-A39Y-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22804359	22804359	Frame_Shift_Del	T	-	p.T1175fs
LIHC	TCGA-DD-A39Y-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805404	22805404	Frame_Shift_Del	T	-	p.K826fs
LIHC	TCGA-DD-A39Y-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806136	22806136	Frame_Shift_Del	T	-	p.K582fs
LIHC	TCGA-DD-A39Y-01	TAF4B	ENST00000578121.1,ENST00000269142.5	chr18	23873389:23873495:23895192:23895362:23901033:23901164,	23895193	23895362	23895285	23895285	Frame_Shift_Del	T	-	p.V642fs
LIHC	TCGA-DD-A39Y-01	DSC3	ENST00000434452.1,ENST00000360428.4	chr18	28604314:28604459:28605725:28605881:28609474:28609594,	28605726	28605881	28605729	28605729	Frame_Shift_Del	A	-	p.F209fs
LIHC	TCGA-DD-A39Y-01	DSC2	ENST00000251081.6,ENST00000280904.6	chr18	28650691:28650816:28651570:28651807:28654648:28654873,	28651571	28651807	28651672	28651672	Frame_Shift_Del	T	-	p.N675fs
LIHC	TCGA-DD-A39Y-01	B4GALT6	ENST00000237019.7	chr18	29225317:29225442:29237938:29238052:29246218:29246335,29225317:29225442:29237938:29238052:29264274:29264467,	29237939	29238052	29237989	29237989	Frame_Shift_Del	T	-	p.N99fs
LIHC	TCGA-DD-A39Y-01	TRAPPC8	ENST00000578886.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29426713:29426780:29429528:29429702:29432408:29432467,	29429529	29429702	29429604	29429604	Frame_Shift_Del	T	-	p.K1220fs
LIHC	TCGA-DD-A39Y-01	RNF125	ENST00000580863.1,ENST00000217740.3,ENST00000583384.1	chr18	29625604:29625695:29645864:29645972:29648260:29648391,	29645865	29645972	29645921	29645921	Frame_Shift_Del	T	-	p.S187fs
LIHC	TCGA-DD-A39Y-01	RNF138	ENST00000257190.5,ENST00000261593.3	chr18	29704696:29704808:29706655:29706763:29709081:29709265,	29706656	29706763	29706684	29706684	Frame_Shift_Del	G	-	p.W197fs
LIHC	TCGA-DD-A39Y-01	MEP1B	ENST00000581447.1,ENST00000269202.6	chr18	29784144:29784323:29787214:29787433:29788081:29788234,	29787215	29787433	29787304	29787304	Frame_Shift_Del	A	-	p.K213fs
LIHC	TCGA-DD-A39Y-01	ASXL3	ENST00000269197.5,ENST00000592288.1	chr18	31250636:31250754:31251710:31251830:31263368:31263532,	31251711	31251830	31251768	31251768	Frame_Shift_Del	A	-	p.Q218fs
LIHC	TCGA-DD-A39Y-01	NOL4	ENST00000538587.1,ENST00000261592.5,ENST00000535384.1	chr18	31523028:31523142:31537289:31537481:31538202:31538382,	31537290	31537481	31537347	31537347	Frame_Shift_Del	T	-	p.K457fs
LIHC	TCGA-DD-A39Y-01	GALNT1	ENST00000589189.1,ENST00000269195.5	chr18	33234619:33234765:33243591:33243766:33257554:33257721,	33243592	33243766	33243607	33243607	Frame_Shift_Del	A	-	p.Q52fs
LIHC	TCGA-DD-A39Y-01	SLC39A6	ENST00000269187.5,ENST00000590986.1	chr18	33689655:33689708:33691021:33691212:33692463:33692544,	33691022	33691212	33691205	33691205	Frame_Shift_Del	A	-	p.F644fs
LIHC	TCGA-DD-A39Y-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000535093.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33724901:33724997:33725910:33726011:33726212:33726339,	33725911	33726011	33725958	33725958	Frame_Shift_Del	A	-	p.K314fs
LIHC	TCGA-DD-A39Y-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000350494.6,ENST00000542824.1,ENST00000351393.6,ENST00000358232.6,ENST00000543861.1,ENST00000442325.2	chr18	33739720:33739793:33739920:33739978:33747063:33747185,33739720:33739793:33739920:33739978:33740894:33740967,	33739921	33739978	33739972	33739972	Frame_Shift_Del	A	-	p.Q561fs
LIHC	TCGA-DD-A39Y-01	ELP2	ENST00000423854.2,ENST00000350494.6,ENST00000542824.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33739920:33739978:33747063:33747185:33750025:33750159,33744437:33744630:33747063:33747185:33750025:33750159,	33747064	33747185	33747079	33747079	Frame_Shift_Del	T	-	p.L657fs
LIHC	TCGA-DD-A39Y-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000350494.6,ENST00000542824.1,ENST00000545302.1,ENST00000541748.1,ENST00000351393.6,ENST00000358232.6,ENST00000540766.1,ENST00000442325.2	chr18	33747118:33747185:33750025:33750159:33751009:33751123,	33750026	33750159	33750106	33750106	Frame_Shift_Del	G	-	p.V719fs
LIHC	TCGA-DD-A39Y-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298425	34298425	Frame_Shift_Del	T	-	p.V880fs
LIHC	TCGA-DD-A39Y-01	TPGS2	ENST00000587129.1,ENST00000590692.1,ENST00000591823.1,ENST00000590842.1,ENST00000589049.1,ENST00000585635.1,ENST00000587382.1,ENST00000334295.4,ENST00000591906.1	chr18	34380187:34380274:34385336:34385465:34387809:34387897,	34385337	34385465	34385419	34385419	Frame_Shift_Del	T	-	p.K100fs
LIHC	TCGA-DD-A39Y-01	PIK3C3	ENST00000588156.1,ENST00000587328.1,ENST00000593098.1,ENST00000588631.1,ENST00000262039.4,ENST00000398870.3	chr18	39644703:39644794:39647351:39647477:39661086:39661148,	39647352	39647477	39647437	39647437	Frame_Shift_Del	T	-	p.L870fs
LIHC	TCGA-DD-A39Y-01	SLC14A1	ENST00000590246.1	chr18	43304914:43304978:43310979:43311169:43314238:43314297,43307338:43307383:43310979:43311169:43314238:43314297,	43310980	43311169	43311103	43311103	Frame_Shift_Del	G	-	p.W92fs
LIHC	TCGA-DD-A39Y-01	HAUS1	ENST00000588704.1,ENST00000282058.6,ENST00000593165.1,ENST00000591715.1,ENST00000592206.1	chr18	43698207:43698282:43699891:43700026:43702432:43702556,	43699892	43700026	43699951	43699951	Frame_Shift_Del	A	-	p.E135fs
LIHC	TCGA-DD-A39Y-01	LOXHD1	ENST00000579038.1,ENST00000335730.2,ENST00000300591.6,ENST00000398722.4,ENST00000441551.2,ENST00000536736.1,ENST00000441893.2,ENST00000582408.1	chr18	44113124:44113287:44114297:44114414:44118118:44118300,	44114298	44114414	44114384	44114384	Frame_Shift_Del	T	-	p.I1376fs
LIHC	TCGA-DD-A39Y-01	PIAS2	ENST00000545673.1	chr18	44435527:44435578:44444126:44444211:44470542:44471017,44435527:44435578:44444126:44444211:44497284:44497308,	44444127	44444211	44444168	44444168	Frame_Shift_Del	A	-	p.F181fs
LIHC	TCGA-DD-A39Y-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470593	44470593	Frame_Shift_Del	T	-	p.N150fs
LIHC	TCGA-DD-A39Y-01	DYM	ENST00000269445.6,ENST00000442713.2	chr18	46623771:46623885:46645113:46645296:46690054:46690157,	46645114	46645296	46645124	46645124	Frame_Shift_Del	T	-	p.N579fs
LIHC	TCGA-DD-A39Y-01	LIPG	ENST00000427224.2,ENST00000261292.4	chr18	47107784:47108027:47108731:47108852:47109925:47110144,	47108732	47108852	47108797	47108797	Frame_Shift_Del	T	-	p.F368fs
LIHC	TCGA-DD-A39Y-01	ACAA2	ENST00000589432.1,ENST00000587994.1,ENST00000285093.10	chr18	47309874:47310301:47311566:47311721:47313660:47313731,	47311567	47311721	47311707	47311707	Frame_Shift_Del	A	-	p.F323fs
LIHC	TCGA-DD-A39Y-01	MYO5B	ENST00000285039.7	chr18	47379818:47380017:47383182:47383260:47389596:47389697,	47383183	47383260	47383243	47383243	Frame_Shift_Del	C	-	p.G1321fs
LIHC	TCGA-DD-A39Y-01	MYO5B	ENST00000285039.7	chr18	47431041:47431198:47432788:47433000:47438431:47438543,	47432789	47433000	47432883	47432883	Frame_Shift_Del	T	-	p.T774fs
LIHC	TCGA-DD-A39Y-01	MBD1	ENST00000591416.1,ENST00000424334.2,ENST00000398495.2,ENST00000457839.2,ENST00000590208.1,ENST00000398493.1,ENST00000585595.1,ENST00000353909.3,ENST00000347968.3,ENST00000585672.1,ENST00000269468.5,ENST00000382948.5	chr18	47799217:47799325:47799703:47799841:47799933:47799985,	47799704	47799841	47799799	47799799	Frame_Shift_Del	G	-	p.Q497fs
LIHC	TCGA-DD-A39Y-01	MBD1	ENST00000585672.1	chr18	47800049:47800233:47800555:47800720:47801346:47801415,	47800556	47800720	47800684	47800684	Frame_Shift_Del	C	-	p.A340fs
LIHC	TCGA-DD-A39Y-01	MBD1	ENST00000269471.5,ENST00000436910.1,ENST00000588937.1,ENST00000591535.1	chr18	47800049:47800233:47800555:47800723:47801346:47801415,47799977:47800233:47800555:47800723:47801498:47801525,	47800556	47800723	47800684	47800684	Frame_Shift_Del	C	-	p.A340fs
LIHC	TCGA-DD-A39Y-01	MBD1	ENST00000585672.1	chr18	47800555:47800723:47801346:47801415:47801498:47801525,47799977:47800233:47801346:47801415:47801498:47801525,47800555:47800720:47801346:47801415:47801498:47801525,	47801347	47801415	47801395	47801395	Frame_Shift_Del	G	-	p.P310fs
LIHC	TCGA-DD-A39Y-01	ME2	ENST00000585680.1	chr18	48458627:48458730:48466657:48466756:48473386:48473524,	48466658	48466756	48466692	48466692	Frame_Shift_Del	C	-	p.A508fs
LIHC	TCGA-DD-A39Y-01	POLI	ENST00000217800.5,ENST00000585023.1,ENST00000579434.1,ENST00000406285.3,ENST00000577361.1,ENST00000581950.1,ENST00000579534.1,ENST00000582366.1	chr18	51813650:51813781:51818202:51818408:51820018:51820129,	51818203	51818408	51818248	51818248	Frame_Shift_Del	T	-	p.L415fs
LIHC	TCGA-DD-A39Y-01	CCDC68	ENST00000337363.4,ENST00000432185.1,ENST00000591504.1	chr18	52604063:52604189:52605187:52605328:52608227:52608289,	52605188	52605328	52605193	52605193	Frame_Shift_Del	T	-	p.I114fs
LIHC	TCGA-DD-A39Y-01	TCF4	ENST00000561992.1,ENST00000570177.2,ENST00000564228.1,ENST00000354452.3,ENST00000543082.1,ENST00000457482.3,ENST00000561831.3,ENST00000568673.1,ENST00000565018.2,ENST00000537856.3,ENST00000566279.1,ENST00000570287.2,ENST00000564999.1,ENST00000540999.1,ENST00000568740.1,ENST00000566286.1,ENST00000356073.4,ENST00000570146.1,ENST00000537578.1,ENST00000398339.1,ENST00000567880.1,ENST00000544241.2,ENST00000562680.1,ENST00000564403.2	chr18	52927179:52927258:52928696:52928764:52937061:52937194,	52928697	52928764	52928712	52928712	Frame_Shift_Del	C	-	p.G325fs
LIHC	TCGA-DD-A39Y-01	TCF4	ENST00000566279.1	chr18	53252547:53252583:53254275:53254367:53255268:53255391,53252547:53252583:53254275:53254367:53256527:53256751,53252547:53252583:53254275:53254367:53255700:53255766,	53254276	53254367	53254283	53254283	Frame_Shift_Del	A	-	p.F22fs
LIHC	TCGA-DD-A39Y-01	TXNL1	ENST00000217515.6,ENST00000587613.1,ENST00000590954.1,ENST00000586262.1	chr18	54285271:54285357:54291518:54291692:54293591:54293688,	54291519	54291692	54291581	54291581	Frame_Shift_Del	T	-	p.I103fs
LIHC	TCGA-DD-A39Y-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54363472:54363693:54385194:54385390:54398613:54398828,	54385195	54385390	54385264	54385264	Frame_Shift_Del	A	-	p.K551fs
LIHC	TCGA-DD-A39Y-01	FECH	ENST00000585494.1,ENST00000262093.5,ENST00000382873.3,ENST00000591977.1	chr18	55218546:55218606:55221491:55221656:55222076:55222184,	55221492	55221656	55221502	55221502	Frame_Shift_Del	A	-	p.L356fs
LIHC	TCGA-DD-A39Y-01	FECH	ENST00000585878.1,ENST00000382873.3	chr18	55240477:55240597:55247286:55247431:55253785:55253844,	55247287	55247431	55247335	55247335	Frame_Shift_Del	C	-	p.G55fs
LIHC	TCGA-DD-A39Y-01	FECH	ENST00000592699.1,ENST00000585494.1,ENST00000592111.1,ENST00000585747.1	chr18	55240477:55240597:55247304:55247431:55253785:55253844,	55247305	55247431	55247335	55247335	Frame_Shift_Del	C	-	p.G55fs
LIHC	TCGA-DD-A39Y-01	NARS	ENST00000586807.1,ENST00000256854.5,ENST00000423481.2	chr18	55273847:55273983:55274365:55274565:55274675:55274715,	55274366	55274565	55274480	55274480	Frame_Shift_Del	A	-	p.L296fs
LIHC	TCGA-DD-A39Y-01	NARS	ENST00000591599.1,ENST00000586807.1,ENST00000587194.1,ENST00000540592.1,ENST00000423481.2,ENST00000587366.1	chr18	55283048:55283207:55287800:55287883:55288939:55288969,	55287801	55287883	55287812	55287812	Frame_Shift_Del	T	-	p.T28fs
LIHC	TCGA-DD-A39Y-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55317598:55317729:55319265:55319404:55319715:55319961,	55319266	55319404	55319354	55319354	Frame_Shift_Del	A	-	p.F1104fs
LIHC	TCGA-DD-A39Y-01	NEDD4L	ENST00000400345.3,ENST00000256832.7,ENST00000256830.9,ENST00000382850.4	chr18	55711892:55711940:55833019:55833093:55912658:55912721,	55833020	55833093	55833027	55833027	Frame_Shift_Del	C	-	p.S19fs
LIHC	TCGA-DD-A39Y-01	ALPK2	ENST00000361673.3	chr18	56191166:56191294:56196322:56196470:56202065:56204351,	56196323	56196470	56196355	56196355	Frame_Shift_Del	T	-	p.K1823fs
LIHC	TCGA-DD-A39Y-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203064	56203064	Frame_Shift_Del	A	-	p.L1452fs
LIHC	TCGA-DD-A39Y-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246267	56246267	Frame_Shift_Del	T	-	p.R581fs
LIHC	TCGA-DD-A39Y-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56367672:56367823:56376609:56376788:56377207:56377304,	56376610	56376788	56376667	56376667	Frame_Shift_Del	A	-	p.Q236fs
LIHC	TCGA-DD-A39Y-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56383166:56383199:56390279:56390483:56400628:56400806,	56390280	56390483	56390329	56390329	Frame_Shift_Del	C	-	p.H356fs
LIHC	TCGA-DD-A39Y-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56585963	56585963	Frame_Shift_Del	C	-	p.D148fs
LIHC	TCGA-DD-A39Y-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56587383	56587383	Frame_Shift_Del	G	-	p.G622fs
LIHC	TCGA-DD-A39Y-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56587507	56587507	Frame_Shift_Del	C	-	p.S663fs
LIHC	TCGA-DD-A39Y-01	LMAN1	ENST00000251047.5	chr18	56998694:56998771:57000322:57000476:57005788:57005859,	57000323	57000476	57000352	57000352	Frame_Shift_Del	C	-	p.D449fs
LIHC	TCGA-DD-A39Y-01	CDH20	ENST00000538374.1,ENST00000536675.2,ENST00000262717.4	chr18	59212259:59212377:59217210:59217462:59221422:59221591,	59217211	59217462	59217418	59217418	Frame_Shift_Del	G	-	p.R619fs
LIHC	TCGA-DD-A39Y-01	PIGN	ENST00000400334.3,ENST00000357637.5	chr18	59777066:59777206:59780366:59780549:59781793:59781872,	59780367	59780549	59780388	59780388	Frame_Shift_Del	T	-	p.K471fs
LIHC	TCGA-DD-A39Y-01	TNFRSF11A	ENST00000586569.1	chr18	60027187:60027282:60028912:60029026:60033940:60033993,	60028913	60029026	60029005	60029005	Frame_Shift_Del	A	-	p.K238fs
LIHC	TCGA-DD-A39Y-01	ZCCHC2	ENST00000585873.1,ENST00000591145.1	chr18	60242530:60242783:60243744:60243885:60251678:60251828,	60243745	60243885	60243776	60243776	Frame_Shift_Del	C	-	p.L1167fs
LIHC	TCGA-DD-A39Y-01	VPS4B	ENST00000589604.1,ENST00000588059.1	chr18	61070939:61071059:61077522:61077679:61078699:61078811,	61077523	61077679	61077573	61077573	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A39Y-01	SERPINB13	ENST00000269489.5,ENST00000431153.1,ENST00000479842.1,ENST00000344731.5,ENST00000438844.1	chr18	61254662:61254684:61255884:61256066:61256889:61256946,	61255885	61256066	61256030	61256030	Frame_Shift_Del	G	-	p.L43fs
LIHC	TCGA-DD-A39Y-01	CDH19	ENST00000262150.2	chr18	64176231:64176483:64178804:64178922:64197081:64197203,	64178805	64178922	64178865	64178865	Frame_Shift_Del	A	-	p.Y506fs
LIHC	TCGA-DD-A39Y-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367659	66367659	Frame_Shift_Del	A	-	p.F125fs
LIHC	TCGA-DD-A39Y-01	RTTN	ENST00000437017.1,ENST00000255674.6,ENST00000583043.1,ENST00000454359.1,ENST00000581161.1	chr18	67788791:67788936:67794737:67794977:67795593:67795782,	67794738	67794977	67794862	67794862	Frame_Shift_Del	C	-	p.E1087fs
LIHC	TCGA-DD-A39Y-01	RTTN	ENST00000437017.1,ENST00000255674.6	chr18	67806834:67806952:67807335:67807424:67809523:67809623,	67807336	67807424	67807377	67807377	Frame_Shift_Del	T	-	p.I878fs
LIHC	TCGA-DD-A39Y-01	CNDP2	ENST00000579847.1,ENST00000581272.1,ENST00000581513.1,ENST00000584768.1,ENST00000582589.1,ENST00000324262.4,ENST00000582666.1,ENST00000582260.1,ENST00000583785.1,ENST00000577355.1,ENST00000583216.1	chr18	72168620:72168707:72173083:72173246:72179682:72179692,72168620:72168707:72173083:72173246:72176074:72176078,	72173084	72173246	72173153	72173153	Frame_Shift_Del	A	-	p.K92fs
LIHC	TCGA-DD-A39Y-01	MBP	ENST00000581878.1,ENST00000579129.1,ENST00000397860.3,ENST00000580402.1,ENST00000397863.1,ENST00000355994.2,ENST00000490754.1	chr18	74729074:74729224:74778253:74778341:74817166:74817217,	74778254	74778341	74778307	74778307	Frame_Shift_Del	T	-	p.K29fs
LIHC	TCGA-DD-A39Y-01	ATP9B	ENST00000426216.2,ENST00000585674.1,ENST00000307671.7,ENST00000490210.2	chr18	76966976:76967012:76973961:76974038:77013380:77013541,	76973962	76974038	76974029	76974029	Frame_Shift_Del	A	-	p.P366fs
LIHC	TCGA-DD-A39Y-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000543761.1,ENST00000490210.2,ENST00000588921.1	chr18	77107906:77107925:77108131:77108196:77119353:77119462,	77108132	77108196	77108194	77108194	Frame_Shift_Del	G	-	p.V967fs
LIHC	TCGA-DD-A39Y-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470348	77470348	Frame_Shift_Del	T	-	p.F259fs
LIHC	TCGA-DD-A39Y-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470370	77470370	Frame_Shift_Del	T	-	p.L266fs
LIHC	TCGA-DD-A39Y-01	PALM	ENST00000338448.5,ENST00000264560.7,ENST00000589012.1,ENST00000592870.1	chr19	727563:727694:731094:731245:734172:734194,	731095	731245	731184	731184	Frame_Shift_Del	C	-	p.A120fs
LIHC	TCGA-DD-A39Y-01	CNN2	ENST00000565096.2	chr19	1032390:1032457:1032557:1032662:1036128:1036245,	1032558	1032662	1032576	1032576	Frame_Shift_Del	T	-	p.F91fs
LIHC	TCGA-DD-A39Y-01	CNN2	ENST00000566695.1,ENST00000568865.1,ENST00000263097.4	chr19	1032390:1032457:1032557:1032695:1036414:1036561,1032390:1032457:1032557:1032695:1036128:1036245,	1032558	1032695	1032576	1032576	Frame_Shift_Del	T	-	p.F91fs
LIHC	TCGA-DD-A39Y-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6	chr19	1043723:1043840:1044575:1044743:1045000:1045230,	1044576	1044743	1044707	1044707	Frame_Shift_Del	G	-	p.V393fs
LIHC	TCGA-DD-A39Y-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3	chr19	1113533:1113703:1114229:1114421:1116019:1116102,	1114230	1114421	1114325	1114325	Frame_Shift_Del	G	-	p.P661fs
LIHC	TCGA-DD-A39Y-01	C19orf25	ENST00000427685.2	chr19	1475144:1475257:1478652:1478904:1479161:1479193,	1478653	1478904	1478730	1478730	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-DD-A39Y-01	PCSK4	ENST00000588195.1,ENST00000591303.1,ENST00000591201.1,ENST00000300954.5	chr19	1482437:1482474:1482894:1483019:1483282:1483435,	1482895	1483019	1482967	1482967	Frame_Shift_Del	G	-	p.H542fs
LIHC	TCGA-DD-A39Y-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918916	1918916	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-DD-A39Y-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918980	1918980	Frame_Shift_Del	G	-	p.W129fs
LIHC	TCGA-DD-A39Y-01	MKNK2	ENST00000309340.7,ENST00000591142.1	chr19	2037630:2037828:2040132:2040176:2041038:2041203,	2040133	2040176	2040169	2040169	Frame_Shift_Del	G	-	p.P373fs
LIHC	TCGA-DD-A39Y-01	AP3D1	ENST00000345016.5,ENST00000356926.4,ENST00000355272.6	chr19	2130500:2130536:2132469:2132577:2137009:2137090,	2132470	2132577	2132510	2132510	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A39Y-01	DOT1L	ENST00000398665.3	chr19	2210619:2210854:2211097:2211211:2211749:2211841,	2211098	2211211	2211158	2211158	Frame_Shift_Del	C	-	p.S471fs
LIHC	TCGA-DD-A39Y-01	AMH	ENST00000221496.4	chr19	2249307:2249743:2250335:2250478:2250650:2250748,	2250336	2250478	2250394	2250394	Frame_Shift_Del	C	-	p.G157fs
LIHC	TCGA-DD-A39Y-01	SGTA	ENST00000221566.2	chr19	2757690:2757780:2759254:2759292:2761457:2761520,	2759255	2759292	2759268	2759268	Frame_Shift_Del	G	-	p.Q242fs
LIHC	TCGA-DD-A39Y-01	THOP1	ENST00000585338.1,ENST00000585673.1,ENST00000307741.6	chr19	2790418:2790631:2794761:2794910:2796078:2796186,	2794762	2794910	2794880	2794880	Frame_Shift_Del	G	-	p.E116fs
LIHC	TCGA-DD-A39Y-01	TLE6	ENST00000468176.3,ENST00000482627.1	chr19	2977577:2977617:2978195:2978282:2980097:2980180,2977561:2977608:2978195:2978282:2980097:2980180,	2978196	2978282	2978264	2978264	Frame_Shift_Del	C	-	p.G11fs
LIHC	TCGA-DD-A39Y-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000591529.1,ENST00000426948.2,ENST00000443826.3	chr19	3002350:3002501:3005434:3005582:3005718:3005966,	3005435	3005582	3005437	3005437	Frame_Shift_Del	G	-	p.Q632fs
LIHC	TCGA-DD-A39Y-01	GNA15	ENST00000586082.1,ENST00000262958.3	chr19	3150128:3150283:3151704:3151833:3155820:3155824,	3151705	3151833	3151774	3151774	Frame_Shift_Del	C	-	p.S185fs
LIHC	TCGA-DD-A39Y-01	NFIC	ENST00000589123.1,ENST00000589164.1,ENST00000443272.2	chr19	3452638:3452664:3453760:3453914:3456547:3456598,	3453761	3453914	3453767	3453767	Frame_Shift_Del	G	-	p.G417fs
LIHC	TCGA-DD-A39Y-01	PIP5K1C	ENST00000589578.1,ENST00000539785.1,ENST00000537021.1,ENST00000335312.3	chr19	3643240:3643379:3644084:3644249:3645971:3646056,	3644085	3644249	3644115	3644115	Frame_Shift_Del	C	-	p.A494fs
LIHC	TCGA-DD-A39Y-01	PIP5K1C	ENST00000589578.1,ENST00000539785.1,ENST00000537021.1,ENST00000335312.3	chr19	3648622:3648706:3651823:3652029:3653287:3653587,	3651824	3652029	3651905	3651905	Frame_Shift_Del	C	-	p.G349fs
LIHC	TCGA-DD-A39Y-01	TJP3	ENST00000589378.1,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9,ENST00000587912.1	chr19	3708500:3708559:3728601:3728711:3730025:3730128,3728421:3728478:3728601:3728711:3730025:3730128,	3728602	3728711	3728617	3728617	Frame_Shift_Del	T	-	p.F22fs
LIHC	TCGA-DD-A39Y-01	TJP3	ENST00000590545.1	chr19	3728421:3728478:3728571:3728711:3730025:3730128,	3728572	3728711	3728617	3728617	Frame_Shift_Del	T	-	p.F22fs
LIHC	TCGA-DD-A39Y-01	TJP3	ENST00000589378.1,ENST00000539908.2,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9,ENST00000586032.1	chr19	3747791:3748079:3750135:3750182:3750579:3750682,	3750136	3750182	3750150	3750150	Frame_Shift_Del	C	-	p.H875fs
LIHC	TCGA-DD-A39Y-01	MAP2K2	ENST00000601786.1,ENST00000262948.5,ENST00000394867.4	chr19	4097276:4097341:4099198:4099412:4101016:4101045,	4099199	4099412	4099312	4099312	Frame_Shift_Del	G	-	p.P270fs
LIHC	TCGA-DD-A39Y-01	MAP2K2	ENST00000601786.1,ENST00000262948.5,ENST00000394867.4	chr19	4097276:4097341:4099198:4099412:4101016:4101045,	4099199	4099412	4099320	4099320	Frame_Shift_Del	G	-	p.P266fs
LIHC	TCGA-DD-A39Y-01	STAP2	ENST00000597593.1,ENST00000594605.1,ENST00000599736.1,ENST00000602007.1,ENST00000600324.1	chr19	4325212:4325305:4325392:4325542:4326938:4326949,	4325393	4325542	4325433	4325433	Frame_Shift_Del	G	-	p.P313fs
LIHC	TCGA-DD-A39Y-01	SH3GL1	ENST00000598230.1,ENST00000269886.3,ENST00000593591.1	chr19	4364084:4364218:4365478:4365622:4366497:4366567,	4365479	4365622	4365496	4365496	Frame_Shift_Del	C	-	p.G106fs
LIHC	TCGA-DD-A39Y-01	UBXN6	ENST00000590466.1	chr19	4445472:4445620:4446045:4446194:4446279:4446410,4445472:4445620:4446045:4446194:4446496:4446617,	4446046	4446194	4446098	4446098	Frame_Shift_Del	C	-	p.G384fs
LIHC	TCGA-DD-A39Y-01	UBXN6	ENST00000587324.1,ENST00000587009.1	chr19	4445472:4445620:4446045:4446410:4446496:4446617,	4446046	4446410	4446098	4446098	Frame_Shift_Del	C	-	p.G384fs
LIHC	TCGA-DD-A39Y-01	DPP9	ENST00000597145.1,ENST00000598800.1,ENST00000262960.9,ENST00000597849.1,ENST00000594671.1	chr19	4694672:4694835:4695389:4695567:4697562:4697663,	4695390	4695567	4695508	4695508	Frame_Shift_Del	G	-	p.P412fs
LIHC	TCGA-DD-A39Y-01	DPP9	ENST00000597145.1,ENST00000598800.1,ENST00000597726.1,ENST00000599163.1,ENST00000601764.1,ENST00000262960.9,ENST00000597849.1,ENST00000594671.1	chr19	4702695:4702728:4703897:4704066:4704142:4704163,	4703898	4704066	4704003	4704003	Frame_Shift_Del	T	-	p.I222fs
LIHC	TCGA-DD-A39Y-01	KDM4B	ENST00000159111.4,ENST00000536461.1,ENST00000381759.4	chr19	5016335:5016350:5032876:5033042:5039846:5040022,	5032877	5033042	5032941	5032941	Frame_Shift_Del	A	-	p.K14fs
LIHC	TCGA-DD-A39Y-01	PTPRS	ENST00000588552.1,ENST00000262963.6,ENST00000592099.1,ENST00000588012.1,ENST00000348075.2,ENST00000353284.2	chr19	5243911:5244493:5245786:5246056:5258027:5258138,	5245787	5246056	5245996	5245996	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-DD-A39Y-01	SAFB2	ENST00000591123.1	chr19	5610005:5610106:5610649:5610699:5612550:5612578,	5610650	5610699	5610693	5610693	Frame_Shift_Del	A	-	p.F384fs
LIHC	TCGA-DD-A39Y-01	RANBP3	ENST00000340578.6,ENST00000592771.1,ENST00000592197.1,ENST00000034275.8,ENST00000591092.1,ENST00000541471.1,ENST00000439268.2,ENST00000587411.1,ENST00000586344.1	chr19	5921211:5921332:5923204:5923314:5923822:5923885,	5923205	5923314	5923250	5923250	Frame_Shift_Del	T	-	p.K388fs
LIHC	TCGA-DD-A39Y-01	RANBP3	ENST00000587411.1	chr19	5923822:5923925:5924837:5925748:5927978:5928098,	5924838	5925748	5925666	5925666	Frame_Shift_Del	A	-	p.F299fs
LIHC	TCGA-DD-A39Y-01	RFX2	ENST00000586806.1	chr19	6016100:6016282:6026173:6026248:6039990:6040252,6016100:6016282:6026173:6026248:6110403:6110457,	6026174	6026248	6026218	6026218	Frame_Shift_Del	T	-	p.S185fs
LIHC	TCGA-DD-A39Y-01	GTF2F1	ENST00000595047.1,ENST00000394456.5	chr19	6383330:6383506:6387399:6387570:6389454:6389648,	6387400	6387570	6387504	6387504	Frame_Shift_Del	G	-	p.P131fs
LIHC	TCGA-DD-A39Y-01	C3	ENST00000596238.1,ENST00000245907.6,ENST00000596548.1	chr19	6684570:6684661:6684785:6684845:6684998:6685049,	6684786	6684845	6684835	6684835	Frame_Shift_Del	T	-	p.N1327fs
LIHC	TCGA-DD-A39Y-01	TRIP10	ENST00000313244.9	chr19	6744810:6745005:6746039:6746207:6746462:6746572,	6746040	6746207	6746205	6746205	Frame_Shift_Del	G	-	p.G384fs
LIHC	TCGA-DD-A39Y-01	TRIP10	ENST00000600677.1	chr19	6744810:6745005:6746188:6746207:6746443:6746572,	6746189	6746207	6746205	6746205	Frame_Shift_Del	G	-	p.G384fs
LIHC	TCGA-DD-A39Y-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755137	6755137	Frame_Shift_Del	G	-	p.P229fs
LIHC	TCGA-DD-A39Y-01	SH2D3A	ENST00000597687.1,ENST00000245908.6,ENST00000595681.1,ENST00000595369.1	chr19	6759604:6759681:6760648:6760998:6763690:6763827,	6760649	6760998	6760810	6760810	Frame_Shift_Del	G	-	p.P86fs
LIHC	TCGA-DD-A39Y-01	VAV1	ENST00000602142.1,ENST00000539284.1,ENST00000304076.2,ENST00000599806.1,ENST00000596764.1	chr19	6821632:6821691:6821801:6821870:6822231:6822340,	6821802	6821870	6821817	6821817	Frame_Shift_Del	G	-	p.E134fs
LIHC	TCGA-DD-A39Y-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7166164:7166415:7167978:7168105:7170547:7170762,	7167979	7168105	7168086	7168086	Frame_Shift_Del	T	-	p.K501fs
LIHC	TCGA-DD-A39Y-01	PNPLA6	ENST00000450331.3,ENST00000414982.3,ENST00000221249.6	chr19	7616247:7616323:7618757:7618901:7619094:7619129,	7618758	7618901	7618771	7618771	Frame_Shift_Del	G	-	p.L719fs
LIHC	TCGA-DD-A39Y-01	PNPLA6	ENST00000545201.2,ENST00000600737.1,ENST00000599951.1	chr19	7616247:7616323:7618760:7618901:7619094:7619129,	7618761	7618901	7618771	7618771	Frame_Shift_Del	G	-	p.L719fs
LIHC	TCGA-DD-A39Y-01	CAMSAP3	ENST00000446248.2	chr19	7671662:7671695:7672706:7672754:7673011:7673150,	7672707	7672754	7672746	7672746	Frame_Shift_Del	C	-	p.P233fs
LIHC	TCGA-DD-A39Y-01	STXBP2	ENST00000595950.1,ENST00000597068.1,ENST00000414284.2,ENST00000221283.5,ENST00000441779.2	chr19	7705785:7705889:7706590:7706739:7706919:7707004,	7706591	7706739	7706719	7706719	Frame_Shift_Del	C	-	p.Y197fs
LIHC	TCGA-DD-A39Y-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8151083:8151209:8151960:8152095:8152708:8152831,	8151961	8152095	8152002	8152002	Frame_Shift_Del	G	-	p.P2238fs
LIHC	TCGA-DD-A39Y-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8174110:8174272:8174514:8174637:8175728:8175851,	8174515	8174637	8174579	8174579	Frame_Shift_Del	G	-	p.P1464fs
LIHC	TCGA-DD-A39Y-01	ANGPTL4	ENST00000301455.2,ENST00000595079.1,ENST00000593998.1,ENST00000541807.1,ENST00000393962.2	chr19	8435939:8436035:8436124:8436406:8438588:8438839,	8436125	8436406	8436322	8436322	Frame_Shift_Del	C	-	p.P319fs
LIHC	TCGA-DD-A39Y-01	HNRNPM	ENST00000348943.3,ENST00000600092.1,ENST00000596984.1	chr19	8528476:8528570:8530207:8530246:8530363:8530399,	8530208	8530246	8530242	8530242	Frame_Shift_Del	A	-	p.Q158fs
LIHC	TCGA-DD-A39Y-01	PRAM1	ENST00000423345.4,ENST00000255612.3	chr19	8563109:8563173:8563259:8564664:8567448:8567495,	8563260	8564664	8564152	8564152	Frame_Shift_Del	G	-	p.P180fs
LIHC	TCGA-DD-A39Y-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000397910.4,ENST00000601404.1	chr19	8976259:8976432:8976580:8976648:8976738:8976804,	8976581	8976648	8976585	8976585	Frame_Shift_Del	G	-	p.L14131fs
LIHC	TCGA-DD-A39Y-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4	chr19	8994416:8994538:8995634:8995700:8995953:8995989,	8995635	8995700	8995687	8995687	Frame_Shift_Del	G	-	p.P13767fs
LIHC	TCGA-DD-A39Y-01	ZNF561	ENST00000483768.1,ENST00000443819.1,ENST00000444611.1,ENST00000302851.3,ENST00000424629.1	chr19	9721883:9722012:9724696:9724779:9727720:9727847,	9724697	9724779	9724728	9724728	Frame_Shift_Del	A	-	p.L98fs
LIHC	TCGA-DD-A39Y-01	ZNF562	ENST00000541032.1,ENST00000453372.2,ENST00000453792.2,ENST00000588653.1,ENST00000448622.1	chr19	9763496:9764554:9767222:9767329:9770054:9770143,9763496:9764554:9767222:9767329:9768684:9768811,9764433:9764557:9767222:9767329:9771395:9771497,9764433:9764557:9767222:9767329:9768684:9768811,	9767223	9767329	9767320	9767320	Frame_Shift_Del	A	-	p.F84fs
LIHC	TCGA-DD-A39Y-01	DNMT1	ENST00000586799.1,ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4	chr19	10262073:10262221:10262425:10262523:10264968:10265155,	10262426	10262523	10262483	10262483	Frame_Shift_Del	T	-	p.K671fs
LIHC	TCGA-DD-A39Y-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291157	10291157	Frame_Shift_Del	C	-	p.G105fs
LIHC	TCGA-DD-A39Y-01	ICAM1	ENST00000588645.1	chr19	10381795:10381902:10385440:10385704:10394156:10394170,	10385441	10385704	10385569	10385569	Frame_Shift_Del	A	-	p.K67fs
LIHC	TCGA-DD-A39Y-01	ICAM5	ENST00000586480.1,ENST00000221980.4	chr19	10402164:10402485:10402710:10402998:10403287:10403542,	10402711	10402998	10402835	10402835	Frame_Shift_Del	G	-	p.L266fs
LIHC	TCGA-DD-A39Y-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433320:10433415:10433820:10433950:10434050:10434242,	10433821	10433950	10433828	10433828	Frame_Shift_Del	C	-	p.G374fs
LIHC	TCGA-DD-A39Y-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433320:10433415:10433820:10433950:10434050:10434242,	10433821	10433950	10433886	10433886	Frame_Shift_Del	C	-	p.G355fs
LIHC	TCGA-DD-A39Y-01	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461727:10461838:10463109:10463227:10463601:10463750,	10463110	10463227	10463113	10463113	Frame_Shift_Del	G	-	p.P1105fs
LIHC	TCGA-DD-A39Y-01	TYK2	ENST00000525621.1,ENST00000592137.1,ENST00000264818.6,ENST00000524462.1	chr19	10463643:10463774:10464203:10464322:10464717:10464779,	10464204	10464322	10464284	10464284	Frame_Shift_Del	G	-	p.L983fs
LIHC	TCGA-DD-A39Y-01	ATG4D	ENST00000309469.4,ENST00000586417.1	chr19	10655795:10655806:10657514:10657791:10657864:10657929,	10657515	10657791	10657543	10657543	Frame_Shift_Del	G	-	p.L174fs
LIHC	TCGA-DD-A39Y-01	ATG4D	ENST00000587256.1	chr19	10655795:10655806:10657514:10657758:10657864:10657929,	10657515	10657758	10657543	10657543	Frame_Shift_Del	G	-	p.L174fs
LIHC	TCGA-DD-A39Y-01	ATG4D	ENST00000590096.1	chr19	10655795:10655806:10657514:10657929:10659579:10659710,	10657515	10657929	10657543	10657543	Frame_Shift_Del	G	-	p.L174fs
LIHC	TCGA-DD-A39Y-01	ATG4D	ENST00000588857.1	chr19	10655795:10655806:10657514:10657747:10657864:10657929,	10657515	10657747	10657543	10657543	Frame_Shift_Del	G	-	p.L174fs
LIHC	TCGA-DD-A39Y-01	KRI1	ENST00000546063.1,ENST00000536689.1,ENST00000361821.5,ENST00000539027.1,ENST00000312962.6,ENST00000478863.1,ENST00000432197.1	chr19	10672466:10672521:10673404:10673513:10675604:10675710,	10673405	10673513	10673461	10673461	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-DD-A39Y-01	KRI1	ENST00000544397.1	chr19	10672466:10672521:10673404:10673497:10675604:10675710,	10673405	10673497	10673461	10673461	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-DD-A39Y-01	ILF3	ENST00000591649.1,ENST00000590261.1,ENST00000318511.3,ENST00000449870.1,ENST00000587928.1,ENST00000588657.1	chr19	10794592:10794646:10799225:10799354:10799854:10799988,10798275:10798384:10799225:10799354:10799854:10799988,	10799226	10799354	10799276	10799276	Frame_Shift_Del	G	-	p.G829fs
LIHC	TCGA-DD-A39Y-01	DNM2	ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000359692.6	chr19	10828883:10829079:10870413:10870487:10883154:10883183,	10870414	10870487	10870480	10870480	Frame_Shift_Del	A	-	p.S76fs
LIHC	TCGA-DD-A39Y-01	CARM1	ENST00000586221.1,ENST00000344150.4,ENST00000590699.1,ENST00000589693.1,ENST00000590039.1	chr19	10982585:10982598:11015626:11015752:11018714:11018821,	11015627	11015752	11015679	11015679	Frame_Shift_Del	C	-	p.S91fs
LIHC	TCGA-DD-A39Y-01	RGL3	ENST00000563726.1	chr19	11517499:11517540:11526612:11526824:11527287:11527336,11521928:11522120:11526612:11526824:11527287:11527336,	11526613	11526824	11526663	11526663	Frame_Shift_Del	A	-	p.L196fs
LIHC	TCGA-DD-A39Y-01	RGL3	ENST00000562663.1	chr19	11517499:11517540:11526622:11526824:11527287:11527336,	11526623	11526824	11526663	11526663	Frame_Shift_Del	A	-	p.L196fs
LIHC	TCGA-DD-A39Y-01	CNN1	ENST00000586059.1,ENST00000544952.1,ENST00000586577.1,ENST00000592338.1,ENST00000252456.2,ENST00000535659.2,ENST00000592923.1	chr19	11657522:11657556:11657646:11657784:11658611:11658721,	11657647	11657784	11657708	11657708	Frame_Shift_Del	T	-	p.I55fs
LIHC	TCGA-DD-A39Y-01	ZNF791	ENST00000458122.3,ENST00000343325.4,ENST00000598225.1,ENST00000597691.1	chr19	12734513:12734640:12735463:12735524:12738534:12738619,	12735464	12735524	12735467	12735467	Frame_Shift_Del	A	-	p.E45fs
LIHC	TCGA-DD-A39Y-01	MAN2B1	ENST00000466794.1,ENST00000221363.4,ENST00000456935.2	chr19	12759949:12760030:12760154:12760242:12760726:12760828,	12760155	12760242	12760227	12760227	Frame_Shift_Del	G	-	p.P761fs
LIHC	TCGA-DD-A39Y-01	HOOK2	ENST00000586188.1,ENST00000264827.5	chr19	12875812:12875895:12876503:12876538:12876740:12876772,	12876504	12876538	12876523	12876523	Frame_Shift_Del	T	-	p.R539fs
LIHC	TCGA-DD-A39Y-01	HOOK2	ENST00000592079.1,ENST00000586284.1,ENST00000586719.1,ENST00000590839.1,ENST00000397668.3,ENST00000264827.5,ENST00000589400.1	chr19	12882090:12882133:12882210:12882291:12883003:12883066,	12882211	12882291	12882249	12882249	Frame_Shift_Del	C	-	p.D188fs
LIHC	TCGA-DD-A39Y-01	RAD23A	ENST00000316856.3,ENST00000588329.1,ENST00000588826.2,ENST00000592268.1,ENST00000586534.1	chr19	13058667:13058823:13058990:13059172:13059499:13059627,13058661:13058823:13058990:13059172:13059310:13059366,	13058991	13059172	13059043	13059043	Frame_Shift_Del	C	-	p.A96fs
LIHC	TCGA-DD-A39Y-01	NFIX	ENST00000360105.4,ENST00000358552.3	chr19	13184719:13184840:13186348:13186485:13192493:13192649,	13186349	13186485	13186361	13186361	Frame_Shift_Del	C	-	p.R276fs
LIHC	TCGA-DD-A39Y-01	NFIX	ENST00000585575.1,ENST00000587260.1,ENST00000397661.2,ENST00000585382.1,ENST00000592199.1,ENST00000586797.1,ENST00000588228.1,ENST00000587760.1	chr19	13186348:13186485:13189426:13189549:13192493:13192649,	13189427	13189549	13189493	13189493	Frame_Shift_Del	C	-	p.S341fs
LIHC	TCGA-DD-A39Y-01	TRMT1	ENST00000588746.1	chr19	13226092:13226216:13226439:13226582:13226810:13226841,13226277:13226280:13226439:13226582:13226810:13226841,13226277:13226280:13226439:13226582:13226919:13227245,	13226440	13226582	13226551	13226551	Frame_Shift_Del	T	-	p.K114fs
LIHC	TCGA-DD-A39Y-01	TRMT1	ENST00000592814.1,ENST00000592062.1,ENST00000588229.1	chr19	13226092:13226280:13226959:13227245:13227466:13227516,13226810:13226866:13226959:13227245:13227466:13227516,	13226960	13227245	13227056	13227056	Frame_Shift_Del	T	-	p.Q53fs
LIHC	TCGA-DD-A39Y-01	TRMT1	ENST00000591425.1	chr19	13226092:13226280:13226919:13227245:13227466:13227516,	13226920	13227245	13227056	13227056	Frame_Shift_Del	T	-	p.Q53fs
LIHC	TCGA-DD-A39Y-01	TRMT1	ENST00000593157.1	chr19	13226810:13226866:13226959:13227154:13227466:13227516,	13226960	13227154	13227056	13227056	Frame_Shift_Del	T	-	p.Q53fs
LIHC	TCGA-DD-A39Y-01	TRMT1	ENST00000592892.1	chr19	13226810:13226866:13226985:13227245:13227466:13227516,	13226986	13227245	13227056	13227056	Frame_Shift_Del	T	-	p.Q53fs
LIHC	TCGA-DD-A39Y-01	TRMT1	ENST00000588813.1	chr19	13226810:13226866:13227000:13227154:13227466:13227516,	13227001	13227154	13227056	13227056	Frame_Shift_Del	T	-	p.Q53fs
LIHC	TCGA-DD-A39Y-01	TRMT1	ENST00000586224.1	chr19	13226810:13226866:13227000:13227245:13227466:13227516,	13227001	13227245	13227056	13227056	Frame_Shift_Del	T	-	p.Q53fs
LIHC	TCGA-DD-A39Y-01	CACNA1A	ENST00000360228.5,ENST00000573710.2	chr19	13470419:13470613:13476130:13476283:13482501:13482593,	13476131	13476283	13476195	13476195	Frame_Shift_Del	A	-	p.F240fs
LIHC	TCGA-DD-A39Y-01	ZSWIM4	ENST00000590508.1,ENST00000440752.2	chr19	13919883:13920034:13923810:13923978:13928029:13928167,13919883:13920034:13923810:13923978:13925328:13925679,	13923811	13923978	13923839	13923839	Frame_Shift_Del	C	-	p.S347fs
LIHC	TCGA-DD-A39Y-01	ZSWIM4	ENST00000254323.2,ENST00000590508.1,ENST00000440752.2	chr19	13928029:13928167:13928535:13928790:13930170:13930306,	13928536	13928790	13928702	13928702	Frame_Shift_Del	G	-	p.E496fs
LIHC	TCGA-DD-A39Y-01	CC2D1A	ENST00000589138.1,ENST00000589606.1,ENST00000318003.7	chr19	14029942:14030015:14030630:14030764:14031369:14031481,	14030631	14030764	14030635	14030635	Frame_Shift_Del	C	-	p.F409fs
LIHC	TCGA-DD-A39Y-01	PRKACA	ENST00000589994.1,ENST00000593092.1,ENST00000587372.1,ENST00000308677.4,ENST00000536649.1,ENST00000350356.3	chr19	14211637:14211720:14213627:14213726:14217571:14217672,	14213628	14213726	14213686	14213686	Frame_Shift_Del	T	-	p.K93fs
LIHC	TCGA-DD-A39Y-01	TECR	ENST00000601187.1,ENST00000598333.1,ENST00000599101.1,ENST00000436007.2,ENST00000600083.1,ENST00000215567.5,ENST00000601350.1,ENST00000593775.1,ENST00000597607.1,ENST00000596073.1,ENST00000598987.1	chr19	14675877:14675935:14676013:14676102:14676429:14676472,	14676014	14676102	14676051	14676051	Frame_Shift_Del	C	-	p.N79fs
LIHC	TCGA-DD-A39Y-01	SLC1A6	ENST00000221742.3,ENST00000430939.2	chr19	15064946:15065141:15067287:15067521:15072813:15073157,	15067288	15067521	15067330	15067330	Frame_Shift_Del	C	-	p.G312fs
LIHC	TCGA-DD-A39Y-01	EPHX3	ENST00000221730.3,ENST00000435261.1,ENST00000602233.1	chr19	15338581:15338718:15338807:15338911:15341772:15341901,	15338808	15338911	15338847	15338847	Frame_Shift_Del	G	-	p.P227fs
LIHC	TCGA-DD-A39Y-01	BRD4	ENST00000360016.5,ENST00000594841.1,ENST00000263377.2,ENST00000371835.4	chr19	15376437:15376454:15378226:15378362:15379715:15379853,	15378227	15378362	15378255	15378255	Frame_Shift_Del	T	-	p.K177fs
LIHC	TCGA-DD-A39Y-01	BRD4	ENST00000360016.5,ENST00000597315.1	chr19	15379823:15379853:15383625:15383944:15443100:15443254,	15383626	15383944	15383768	15383768	Frame_Shift_Del	G	-	p.P48fs
LIHC	TCGA-DD-A39Y-01	BRD4	ENST00000360016.5,ENST00000597315.1	chr19	15379823:15379853:15383625:15383944:15443100:15443254,	15383626	15383944	15383835	15383835	Frame_Shift_Del	T	-	p.M26fs
LIHC	TCGA-DD-A39Y-01	CYP4F12	ENST00000550308.1,ENST00000550627.1,ENST00000546608.1,ENST00000518629.3,ENST00000324632.10,ENST00000517734.1	chr19	15795877:15796007:15806745:15806879:15806970:15807035,	15806746	15806879	15806807	15806807	Frame_Shift_Del	C	-	p.P394fs
LIHC	TCGA-DD-A39Y-01	EPS15L1	ENST00000602022.1,ENST00000596151.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000602009.1,ENST00000592031.1,ENST00000535753.2	chr19	16528362:16528448:16528758:16528915:16532129:16532244,	16528759	16528915	16528806	16528806	Frame_Shift_Del	G	-	p.L200fs
LIHC	TCGA-DD-A39Y-01	CALR3	ENST00000269881.3	chr19	16595973:16596068:16601177:16601381:16606561:16606663,	16601178	16601381	16601329	16601329	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A39Y-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16612295	16612295	Frame_Shift_Del	A	-	p.E231fs
LIHC	TCGA-DD-A39Y-01	NWD1	ENST00000379808.3,ENST00000549814.1,ENST00000438489.2,ENST00000524140.2,ENST00000523826.1,ENST00000552788.1,ENST00000518676.1,ENST00000339803.6	chr19	16902160:16902433:16905273:16905364:16908542:16908697,	16905274	16905364	16905350	16905350	Frame_Shift_Del	C	-	p.S1097fs
LIHC	TCGA-DD-A39Y-01	NWD1	ENST00000379808.3,ENST00000438489.2,ENST00000524140.2,ENST00000523826.1,ENST00000552788.1,ENST00000518676.1,ENST00000339803.6	chr19	16908542:16908697:16910696:16910973:16918396:16918947,	16910697	16910973	16910717	16910717	Frame_Shift_Del	G	-	p.Q1160fs
LIHC	TCGA-DD-A39Y-01	NWD1	ENST00000549814.1,ENST00000438489.2,ENST00000523826.1,ENST00000552788.1,ENST00000518676.1,ENST00000339803.6	chr19	16918396:16918947:16923555:16923661:16925838:16927537,	16923556	16923661	16923571	16923571	Frame_Shift_Del	G	-	p.G1435fs
LIHC	TCGA-DD-A39Y-01	CPAMD8	ENST00000443236.1	chr19	17085906:17086068:17086811:17086961:17088177:17088350,	17086812	17086961	17086922	17086922	Frame_Shift_Del	C	-	p.E647fs
LIHC	TCGA-DD-A39Y-01	CPAMD8	ENST00000388925.4,ENST00000443236.1,ENST00000291440.3	chr19	17111223:17111332:17113075:17113160:17115082:17115196,	17113076	17113160	17113130	17113130	Frame_Shift_Del	G	-	p.P283fs
LIHC	TCGA-DD-A39Y-01	CPAMD8	ENST00000388925.4,ENST00000443236.1,ENST00000291440.3	chr19	17111223:17111332:17113075:17113160:17115082:17115196,	17113076	17113160	17113157	17113157	Frame_Shift_Del	A	-	p.L273fs
LIHC	TCGA-DD-A39Y-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000598517.1,ENST00000593360.1	chr19	17160873:17160986:17163634:17163776:17166670:17166812,	17163635	17163776	17163653	17163653	Frame_Shift_Del	T	-	p.K243fs
LIHC	TCGA-DD-A39Y-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000601564.1,ENST00000598517.1,ENST00000595958.1,ENST00000593360.1	chr19	17169620:17169686:17170366:17170461:17170806:17170899,	17170367	17170461	17170383	17170383	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A39Y-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000601564.1,ENST00000598517.1,ENST00000595958.1,ENST00000593360.1	chr19	17169620:17169686:17170366:17170461:17170806:17170899,	17170367	17170461	17170443	17170443	Frame_Shift_Del	T	-	p.K54fs
LIHC	TCGA-DD-A39Y-01	OCEL1	ENST00000599286.1	chr19	17338648:17338814:17339064:17339118:17339817:17340024,17338648:17338814:17339064:17339118:17339611:17339635,17337966:17338008:17339064:17339118:17339611:17339635,17337966:17338008:17339064:17339118:17339817:17340024,	17339065	17339118	17339096	17339096	Frame_Shift_Del	G	-	p.R217fs
LIHC	TCGA-DD-A39Y-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000596925.1	chr19	17420382:17420466:17424831:17424912:17425146:17425198,	17424832	17424912	17424837	17424837	Frame_Shift_Del	T	-	p.D3fs
LIHC	TCGA-DD-A39Y-01	MVB12A	ENST00000528911.1,ENST00000600514.1,ENST00000529939.1,ENST00000543795.1,ENST00000317040.7,ENST00000594784.1,ENST00000524382.1	chr19	17517053:17517105:17534306:17534426:17534501:17534608,17531346:17531443:17534306:17534426:17534501:17534608,17533252:17533267:17534306:17534426:17534501:17534608,	17534307	17534426	17534330	17534330	Frame_Shift_Del	G	-	p.W146fs
LIHC	TCGA-DD-A39Y-01	FCHO1	ENST00000600676.1,ENST00000601247.1	chr19	17865125:17865170:17865926:17866000:17873570:17873662,	17865927	17866000	17865982	17865982	Frame_Shift_Del	T	-	p.Y3fs
LIHC	TCGA-DD-A39Y-01	FCHO1	ENST00000596536.1,ENST00000598086.1,ENST00000598932.1,ENST00000596507.1,ENST00000597512.1,ENST00000597718.1,ENST00000389133.4,ENST00000595033.1,ENST00000594202.1,ENST00000252771.7,ENST00000596309.1,ENST00000600676.1,ENST00000595023.1,ENST00000600209.1,ENST00000593833.1,ENST00000539407.1,ENST00000594068.1,ENST00000597474.1,ENST00000596865.1,ENST00000596951.1,ENST00000595549.1	chr19	17873570:17873662:17875183:17875258:17877477:17877560,	17875184	17875258	17875249	17875249	Frame_Shift_Del	C	-	p.T62fs
LIHC	TCGA-DD-A39Y-01	FCHO1	ENST00000596536.1,ENST00000598086.1,ENST00000598932.1,ENST00000596507.1,ENST00000597512.1,ENST00000597718.1,ENST00000389133.4,ENST00000595033.1,ENST00000594202.1,ENST00000252771.7,ENST00000596309.1,ENST00000600676.1,ENST00000595023.1,ENST00000600209.1,ENST00000593833.1,ENST00000539407.1,ENST00000594068.1,ENST00000597474.1,ENST00000596865.1,ENST00000596951.1,ENST00000595549.1	chr19	17873570:17873662:17875183:17875258:17877477:17877560,	17875184	17875258	17875256	17875256	Frame_Shift_Del	G	-	p.M64fs
LIHC	TCGA-DD-A39Y-01	B3GNT3	ENST00000318683.6	chr19	17905965:17906015:17918566:17919183:17922379:17922562,	17918567	17919183	17918641	17918641	Frame_Shift_Del	C	-	p.P9fs
LIHC	TCGA-DD-A39Y-01	B3GNT3	ENST00000595387.1	chr19	17905965:17906015:17918547:17919183:17922379:17922562,	17918548	17919183	17918641	17918641	Frame_Shift_Del	C	-	p.P9fs
LIHC	TCGA-DD-A39Y-01	B3GNT3	ENST00000318683.6	chr19	17905965:17906015:17918566:17919183:17922379:17922562,	17918567	17919183	17918745	17918745	Frame_Shift_Del	C	-	p.I43fs
LIHC	TCGA-DD-A39Y-01	B3GNT3	ENST00000595387.1	chr19	17905965:17906015:17918547:17919183:17922379:17922562,	17918548	17919183	17918745	17918745	Frame_Shift_Del	C	-	p.I43fs
LIHC	TCGA-DD-A39Y-01	SLC5A5	ENST00000222248.3	chr19	17985472:17985540:17986760:17986915:17988531:17988672,	17986761	17986915	17986863	17986863	Frame_Shift_Del	C	-	p.P216fs
LIHC	TCGA-DD-A39Y-01	IL12RB1	ENST00000593993.2,ENST00000600835.2	chr19	18177351:18177507:18179198:18179336:18180355:18180523,	18179199	18179336	18179299	18179299	Frame_Shift_Del	C	-	p.G409fs
LIHC	TCGA-DD-A39Y-01	TMEM59L	ENST00000262817.3,ENST00000600490.1,ENST00000598660.1,ENST00000594859.1	chr19	18724913:18725005:18726784:18726937:18727809:18727912,	18726785	18726937	18726813	18726813	Frame_Shift_Del	C	-	p.A146fs
LIHC	TCGA-DD-A39Y-01	CRTC1	ENST00000338797.6,ENST00000594658.1,ENST00000321949.8	chr19	18876213:18876338:18879294:18879603:18882251:18882356,	18879295	18879603	18879546	18879546	Frame_Shift_Del	C	-	p.L437fs
LIHC	TCGA-DD-A39Y-01	DDX49	ENST00000602113.1,ENST00000438170.2,ENST00000595858.1,ENST00000601803.1,ENST00000247003.4,ENST00000601772.1,ENST00000599156.1	chr19	19033518:19033553:19035041:19035117:19035431:19035508,	19035042	19035117	19035084	19035084	Frame_Shift_Del	C	-	p.F166fs
LIHC	TCGA-DD-A39Y-01	DDX49	ENST00000602113.1,ENST00000438170.2,ENST00000595858.1,ENST00000247003.4,ENST00000598277.1,ENST00000599156.1	chr19	19035690:19035788:19037111:19037186:19038574:19038642,	19037112	19037186	19037176	19037176	Frame_Shift_Del	G	-	p.E365fs
LIHC	TCGA-DD-A39Y-01	SUGP2	ENST00000601879.1,ENST00000600239.1,ENST00000337018.6,ENST00000452918.2,ENST00000456085.2,ENST00000598240.1,ENST00000594773.1,ENST00000600377.1,ENST00000330854.11	chr19	19119125:19119237:19120663:19121151:19129917:19130038,	19120664	19121151	19120728	19120728	Frame_Shift_Del	G	-	p.P758fs
LIHC	TCGA-DD-A39Y-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338372	19338372	Frame_Shift_Del	C	-	p.T648fs
LIHC	TCGA-DD-A39Y-01	SUGP1	ENST00000247001.5,ENST00000590439.2,ENST00000591350.1	chr19	19414159:19414257:19414532:19414656:19416657:19416885,	19414533	19414656	19414571	19414571	Frame_Shift_Del	T	-	p.K208fs
LIHC	TCGA-DD-A39Y-01	SUGP1	ENST00000588731.2,ENST00000587119.1	chr19	19414159:19414257:19414532:19414852:19416657:19416885,	19414533	19414852	19414571	19414571	Frame_Shift_Del	T	-	p.K208fs
LIHC	TCGA-DD-A39Y-01	SUGP1	ENST00000585444.1	chr19	19420905:19421009:19427055:19427402:19431271:19431279,	19427056	19427402	19427289	19427289	Frame_Shift_Del	T	-	p.M50fs
LIHC	TCGA-DD-A39Y-01	SUGP1	ENST00000247001.5,ENST00000334782.5,ENST00000535070.1,ENST00000585763.1,ENST00000588731.2,ENST00000588580.2,ENST00000606725.1	chr19	19420905:19421009:19427230:19427402:19431271:19431279,	19427231	19427402	19427289	19427289	Frame_Shift_Del	T	-	p.M50fs
LIHC	TCGA-DD-A39Y-01	SUGP1	ENST00000590439.2	chr19	19420905:19421009:19427230:19427331:19431271:19431279,	19427231	19427331	19427289	19427289	Frame_Shift_Del	T	-	p.M50fs
LIHC	TCGA-DD-A39Y-01	GATAD2A	ENST00000252577.5,ENST00000417582.2,ENST00000360315.3	chr19	19516646:19516828:19576148:19576423:19603114:19603125,19496831:19496947:19576148:19576423:19603114:19603125,	19576149	19576423	19576254	19576254	Frame_Shift_Del	G	-	p.G34fs
LIHC	TCGA-DD-A39Y-01	GATAD2A	ENST00000404158.1	chr19	19546939:19547028:19576153:19576423:19603114:19603125,	19576154	19576423	19576254	19576254	Frame_Shift_Del	G	-	p.G34fs
LIHC	TCGA-DD-A39Y-01	GMIP	ENST00000203556.4,ENST00000587238.1,ENST00000445806.2	chr19	19744919:19744999:19745315:19745512:19745600:19745738,	19745316	19745512	19745417	19745417	Frame_Shift_Del	G	-	p.P661fs
LIHC	TCGA-DD-A39Y-01	ATP13A1	ENST00000357324.6,ENST00000291503.5	chr19	19767468:19767575:19767655:19767725:19767802:19767958,	19767656	19767725	19767699	19767699	Frame_Shift_Del	G	-	p.P311fs
LIHC	TCGA-DD-A39Y-01	ZNF737	ENST00000594419.1	chr19	20728701:20728782:20735280:20735376:20736514:20736641,20728701:20728782:20735280:20735376:20748443:20748541,	20735281	20735376	20735324	20735324	Frame_Shift_Del	T	-	p.K61fs
LIHC	TCGA-DD-A39Y-01	ZNF681	ENST00000395385.3,ENST00000531570.1	chr19	23927868:23928125:23937624:23937699:23941548:23941639,	23937625	23937699	23937671	23937671	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A39Y-01	ZNF681	ENST00000528059.1	chr19	23927868:23928125:23937624:23937720:23941548:23941639,	23937625	23937720	23937671	23937671	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A39Y-01	CCNE1	ENST00000444983.2,ENST00000576532.1,ENST00000262643.3,ENST00000575243.1	chr19	30308312:30308448:30311608:30311755:30312628:30312675,	30311609	30311755	30311706	30311706	Frame_Shift_Del	T	-	p.L188fs
LIHC	TCGA-DD-A39Y-01	ANKRD27	ENST00000306065.4	chr19	33106563:33106686:33108494:33108539:33110165:33110285,	33108495	33108539	33108526	33108526	Frame_Shift_Del	A	-	p.L674fs
LIHC	TCGA-DD-A39Y-01	TDRD12	ENST00000444215.2,ENST00000421545.2	chr19	33229761:33229898:33233686:33233806:33239381:33239437,	33233687	33233806	33233732	33233732	Frame_Shift_Del	A	-	p.A122fs
LIHC	TCGA-DD-A39Y-01	SLC7A9	ENST00000587772.1,ENST00000590465.1,ENST00000590341.1,ENST00000023064.4,ENST00000592232.1	chr19	33321525:33321590:33324054:33324229:33333073:33333223,	33324055	33324229	33324212	33324212	Frame_Shift_Del	G	-	p.P414fs
LIHC	TCGA-DD-A39Y-01	RHPN2	ENST00000254260.3	chr19	33502584:33502709:33503552:33503630:33512476:33512552,	33503553	33503630	33503593	33503593	Frame_Shift_Del	A	-	p.L143fs
LIHC	TCGA-DD-A39Y-01	GPATCH1	ENST00000170564.2	chr19	33597600:33597805:33600622:33600922:33602629:33602808,	33600623	33600922	33600869	33600869	Frame_Shift_Del	A	-	p.E511fs
LIHC	TCGA-DD-A39Y-01	GPATCH1	ENST00000170564.2	chr19	33602629:33602808:33603391:33603519:33604672:33604809,	33603392	33603519	33603494	33603494	Frame_Shift_Del	T	-	p.F623fs
LIHC	TCGA-DD-A39Y-01	PEPD	ENST00000436370.3,ENST00000244137.7,ENST00000397032.4	chr19	33878795:33878987:33882200:33882385:33892626:33892775,	33882201	33882385	33882272	33882272	Frame_Shift_Del	C	-	p.A361fs
LIHC	TCGA-DD-A39Y-01	LSM14A	ENST00000544216.3,ENST00000433627.5	chr19	34687538:34687668:34699833:34699956:34706500:34706566,34687571:34687668:34699833:34699956:34706028:34706205,	34699834	34699956	34699937	34699937	Frame_Shift_Del	A	-	p.L173fs
LIHC	TCGA-DD-A39Y-01	UBA2	ENST00000246548.4,ENST00000592791.1,ENST00000439527.2	chr19	34951374:34951471:34954930:34955036:34957782:34957919,	34954931	34955036	34954998	34954998	Frame_Shift_Del	C	-	p.F426fs
LIHC	TCGA-DD-A39Y-01	WTIP	ENST00000585928.1,ENST00000590071.2,ENST00000270288.6	chr19	34984396:34984527:34985490:34985542:34986607:34986676,	34985491	34985542	34985493	34985493	Frame_Shift_Del	T	-	p.V345fs
LIHC	TCGA-DD-A39Y-01	ZNF302	ENST00000505163.1,ENST00000446502.2,ENST00000423823.2,ENST00000509196.1,ENST00000457781.2,ENST00000505242.1	chr19	35173681:35173802:35174059:35174143:35175156:35175369,	35174060	35174143	35174139	35174139	Frame_Shift_Del	A	-	p.S70fs
LIHC	TCGA-DD-A39Y-01	GRAMD1A	ENST00000504615.2,ENST00000598118.1,ENST00000317991.5,ENST00000599564.1,ENST00000411896.2,ENST00000600231.1	chr19	35514201:35514247:35514330:35514451:35516952:35517373,	35514331	35514451	35514337	35514337	Frame_Shift_Del	C	-	p.F739fs
LIHC	TCGA-DD-A39Y-01	GRAMD1A	ENST00000504615.2,ENST00000598118.1,ENST00000317991.5,ENST00000599564.1,ENST00000411896.2,ENST00000600231.1	chr19	35514201:35514247:35514330:35514451:35516952:35517373,	35514331	35514451	35514426	35514426	Frame_Shift_Del	G	-	p.R769fs
LIHC	TCGA-DD-A39Y-01	HPN	ENST00000593305.1,ENST00000599363.1,ENST00000262626.2,ENST00000392226.1,ENST00000541345.2	chr19	35551263:35551416:35551530:35551721:35556153:35556249,	35551531	35551721	35551650	35551650	Frame_Shift_Del	G	-	p.R247fs
LIHC	TCGA-DD-A39Y-01	LGI4	ENST00000310123.3,ENST00000392225.3,ENST00000493050.1,ENST00000587780.1	chr19	35617756:35617921:35622289:35622459:35622692:35622761,	35622290	35622459	35622296	35622296	Frame_Shift_Del	C	-	p.A208fs
LIHC	TCGA-DD-A39Y-01	LGI4	ENST00000310123.3,ENST00000392225.3,ENST00000493050.1,ENST00000587780.1	chr19	35617756:35617921:35622289:35622459:35622692:35622761,	35622290	35622459	35622354	35622354	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-DD-A39Y-01	FXYD7	ENST00000586063.1,ENST00000270310.2	chr19	35639596:35639626:35642156:35642231:35642342:35642376,	35642157	35642231	35642179	35642179	Frame_Shift_Del	G	-	p.V28fs
LIHC	TCGA-DD-A39Y-01	FXYD7	ENST00000588265.1	chr19	35639596:35639626:35642156:35642385:35642535:35642552,	35642157	35642385	35642179	35642179	Frame_Shift_Del	G	-	p.V28fs
LIHC	TCGA-DD-A39Y-01	CD22	ENST00000270311.6,ENST00000419549.2,ENST00000085219.5,ENST00000544992.2,ENST00000601769.1	chr19	35828657:35828924:35829070:35829334:35831783:35831853,	35829071	35829334	35829246	35829246	Frame_Shift_Del	C	-	p.L387fs
LIHC	TCGA-DD-A39Y-01	RBM42	ENST00000262633.4	chr19	36122232:36122307:36123837:36123903:36123978:36124004,	36123838	36123903	36123844	36123844	Frame_Shift_Del	C	-	p.A150fs
LIHC	TCGA-DD-A39Y-01	ETV2	ENST00000479824.1,ENST00000403402.1,ENST00000379026.2,ENST00000402764.2	chr19	36134567:36134655:36135136:36135249:36135553:36135754,	36135137	36135249	36135201	36135201	Frame_Shift_Del	C	-	p.I288fs
LIHC	TCGA-DD-A39Y-01	ARHGAP33	ENST00000587447.3,ENST00000314737.5,ENST00000588248.2,ENST00000378944.5,ENST00000593034.1,ENST00000007510.4	chr19	36275854:36276008:36276090:36276236:36276310:36276385,	36276091	36276236	36276107	36276107	Frame_Shift_Del	G	-	p.G580fs
LIHC	TCGA-DD-A39Y-01	NFKBID	ENST00000585925.1	chr19	36387814:36387960:36388552:36388758:36389373:36389434,36387814:36388005:36388552:36388758:36389373:36389434,	36388553	36388758	36388599	36388599	Frame_Shift_Del	G	-	p.P140fs
LIHC	TCGA-DD-A39Y-01	SYNE4	ENST00000465425.1,ENST00000490730.1,ENST00000324444.3,ENST00000340477.5	chr19	36494211:36494422:36494514:36494573:36496234:36496312,	36494515	36494573	36494523	36494523	Frame_Shift_Del	C	-	p.G341fs
LIHC	TCGA-DD-A39Y-01	SYNE4	ENST00000340477.5	chr19	36496234:36496339:36497324:36497573:36497651:36497837,36496234:36496339:36497324:36497573:36499118:36499269,	36497325	36497573	36497332	36497332	Frame_Shift_Del	C	-	p.G287fs
LIHC	TCGA-DD-A39Y-01	ALKBH6	ENST00000490483.1	chr19	36501468:36501585:36501795:36501967:36502305:36502366,	36501796	36501967	36501902	36501902	Frame_Shift_Del	G	-	p.P54fs
LIHC	TCGA-DD-A39Y-01	ALKBH6	ENST00000252984.7,ENST00000378875.3	chr19	36501468:36501585:36501795:36501947:36502305:36502366,	36501796	36501947	36501902	36501902	Frame_Shift_Del	G	-	p.P54fs
LIHC	TCGA-DD-A39Y-01	ALKBH6	ENST00000490986.1	chr19	36501468:36501585:36501795:36501979:36502305:36502366,	36501796	36501979	36501902	36501902	Frame_Shift_Del	G	-	p.P54fs
LIHC	TCGA-DD-A39Y-01	THAP8	ENST00000538849.1,ENST00000522483.2	chr19	36526049:36526494:36530224:36530620:36545036:36545166,	36530225	36530620	36530439	36530439	Frame_Shift_Del	G	-	p.P153fs
LIHC	TCGA-DD-A39Y-01	THAP8	ENST00000538849.1,ENST00000522483.2	chr19	36526049:36526494:36530224:36530620:36545036:36545166,	36530225	36530620	36530492	36530492	Frame_Shift_Del	G	-	p.P135fs
LIHC	TCGA-DD-A39Y-01	THAP8	ENST00000538849.1,ENST00000522483.2	chr19	36526049:36526494:36530224:36530620:36545036:36545166,	36530225	36530620	36530538	36530538	Frame_Shift_Del	G	-	p.P120fs
LIHC	TCGA-DD-A39Y-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210375	37210375	Frame_Shift_Del	A	-	p.E219fs
LIHC	TCGA-DD-A39Y-01	ZNF790	ENST00000528994.1,ENST00000525288.1,ENST00000356725.4,ENST00000586323.1	chr19	37310838:37311016:37314186:37314282:37314568:37314692,	37314187	37314282	37314249	37314249	Frame_Shift_Del	A	-	p.L57fs
LIHC	TCGA-DD-A39Y-01	SIPA1L3	ENST00000222345.6	chr19	38519728:38519796:38571895:38573739:38579360:38579491,	38571896	38573739	38572578	38572578	Frame_Shift_Del	C	-	p.P126fs
LIHC	TCGA-DD-A39Y-01	SIPA1L3	ENST00000222345.6	chr19	38633212:38633350:38643479:38643607:38652892:38653011,	38643480	38643607	38643517	38643517	Frame_Shift_Del	C	-	p.P1191fs
LIHC	TCGA-DD-A39Y-01	CATSPERG	ENST00000410018.1,ENST00000409410.2,ENST00000409235.3	chr19	38837123:38837245:38842900:38843072:38845349:38845487,	38842901	38843072	38843026	38843026	Frame_Shift_Del	T	-	p.Y317fs
LIHC	TCGA-DD-A39Y-01	CATSPERG	ENST00000412458.2,ENST00000410018.1,ENST00000215069.4,ENST00000409235.3,ENST00000471517.1,ENST00000312265.5	chr19	38852287:38852501:38852849:38852912:38853015:38853214,	38852850	38852912	38852873	38852873	Frame_Shift_Del	C	-	p.D706fs
LIHC	TCGA-DD-A39Y-01	CATSPERG	ENST00000412458.2,ENST00000410018.1,ENST00000215069.4,ENST00000409235.3,ENST00000312265.5	chr19	38853015:38853214:38853353:38853472:38855530:38855611,	38853354	38853472	38853455	38853455	Frame_Shift_Del	A	-	p.N820fs
LIHC	TCGA-DD-A39Y-01	CATSPERG	ENST00000471517.1	chr19	38852849:38852912:38853015:38853472:38855530:38855611,	38853016	38853472	38853455	38853455	Frame_Shift_Del	A	-	p.N820fs
LIHC	TCGA-DD-A39Y-01	FAM98C	ENST00000586372.1,ENST00000588348.1,ENST00000252530.5	chr19	38894304:38894334:38895547:38895753:38895983:38896061,	38895548	38895753	38895607	38895607	Frame_Shift_Del	C	-	p.P137fs
LIHC	TCGA-DD-A39Y-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39071009:39071144:39075582:39075739:39076577:39076642,	39075583	39075739	39075648	39075648	Frame_Shift_Del	C	-	p.D4899fs
LIHC	TCGA-DD-A39Y-01	EIF3K	ENST00000248342.4,ENST00000545173.2,ENST00000593149.1,ENST00000591409.1,ENST00000538434.1,ENST00000590134.1	chr19	39123069:39123136:39123240:39123318:39125632:39125661,	39123241	39123318	39123306	39123306	Frame_Shift_Del	G	-	p.G163fs
LIHC	TCGA-DD-A39Y-01	ACTN4	ENST00000390009.3,ENST00000424234.2,ENST00000252699.2	chr19	39217596:39217743:39218585:39218666:39219635:39219794,	39218586	39218666	39218660	39218660	Frame_Shift_Del	C	-	p.D804fs
LIHC	TCGA-DD-A39Y-01	RINL	ENST00000598904.1,ENST00000591812.1,ENST00000340740.3	chr19	39361717:39361867:39362286:39362351:39362437:39362510,	39362287	39362351	39362319	39362319	Frame_Shift_Del	G	-	p.P27fs
LIHC	TCGA-DD-A39Y-01	PAK4	ENST00000358301.3,ENST00000435673.2,ENST00000593690.1,ENST00000360442.3	chr19	39660171:39660397:39663557:39664016:39664215:39664291,	39663558	39664016	39663913	39663913	Frame_Shift_Del	C	-	p.T187fs
LIHC	TCGA-DD-A39Y-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914653	39914653	Frame_Shift_Del	C	-	p.G931fs
LIHC	TCGA-DD-A39Y-01	LGALS14	ENST00000360675.3	chr19	40195141:40195183:40196344:40196649:40197236:40197313,	40196345	40196649	40196558	40196558	Frame_Shift_Del	C	-	p.T4fs
LIHC	TCGA-DD-A39Y-01	C19orf47	ENST00000392035.2,ENST00000582006.1,ENST00000582783.1	chr19	40832315:40832393:40834319:40834457:40839757:40839836,	40834320	40834457	40834399	40834399	Frame_Shift_Del	G	-	p.P157fs
LIHC	TCGA-DD-A39Y-01	SHKBP1	ENST00000595726.1	chr19	41092801:41092850:41096635:41096759:41096881:41096993,41095006:41095084:41096635:41096759:41096881:41096993,	41096636	41096759	41096727	41096727	Frame_Shift_Del	C	-	p.L620fs
LIHC	TCGA-DD-A39Y-01	SHKBP1	ENST00000596163.1,ENST00000594862.1	chr19	41095006:41095084:41096638:41096759:41096881:41096993,	41096639	41096759	41096727	41096727	Frame_Shift_Del	C	-	p.L620fs
LIHC	TCGA-DD-A39Y-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000396819.3,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000602240.1	chr19	41115458:41115567:41115651:41115777:41116437:41116563,	41115652	41115777	41115675	41115675	Frame_Shift_Del	C	-	p.P597fs
LIHC	TCGA-DD-A39Y-01	C19orf54	ENST00000339153.3,ENST00000470681.1,ENST00000469741.2,ENST00000598729.1,ENST00000598485.2,ENST00000597507.1	chr19	41251034:41251103:41255385:41255512:41256189:41256207,	41255386	41255512	41255511	41255511	Frame_Shift_Del	C	-	p.G66fs
LIHC	TCGA-DD-A39Y-01	AXL	ENST00000593513.1,ENST00000359092.3,ENST00000599659.1,ENST00000301178.4	chr19	41743848:41744059:41744374:41744514:41745068:41745219,	41744375	41744514	41744377	41744377	Frame_Shift_Del	C	-	p.P333fs
LIHC	TCGA-DD-A39Y-01	TGFB1	ENST00000221930.5	chr19	41838032:41838186:41847787:41847935:41848074:41848152,	41847788	41847935	41847810	41847810	Frame_Shift_Del	G	-	p.L280fs
LIHC	TCGA-DD-A39Y-01	CEACAM4	ENST00000221954.2	chr19	42125343:42125768:42126042:42126084:42126583:42126615,	42126043	42126084	42126080	42126080	Frame_Shift_Del	G	-	p.P211fs
LIHC	TCGA-DD-A39Y-01	POU2F2	ENST00000533720.1,ENST00000529952.1,ENST00000389341.5,ENST00000342301.4,ENST00000530982.3,ENST00000531773.1,ENST00000526816.2,ENST00000529067.1,ENST00000528894.4	chr19	42603867:42603973:42621401:42621518:42626277:42626334,	42621402	42621518	42621418	42621418	Frame_Shift_Del	C	-	p.G96fs
LIHC	TCGA-DD-A39Y-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621418	42621418	Frame_Shift_Del	C	-	p.G96fs
LIHC	TCGA-DD-A39Y-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795886	42795886	Frame_Shift_Del	C	-	p.P1869fs
LIHC	TCGA-DD-A39Y-01	PSG6	ENST00000402603.4,ENST00000292125.2,ENST00000402456.4	chr19	43414731:43415010:43420276:43420639:43421880:43422039,	43420277	43420639	43420587	43420587	Frame_Shift_Del	T	-	p.E39fs
LIHC	TCGA-DD-A39Y-01	PSG11	ENST00000401740.1,ENST00000320078.7	chr19	43522921:43523200:43528842:43529208:43530460:43530618,	43528843	43529208	43529129	43529129	Frame_Shift_Del	C	-	p.G48fs
LIHC	TCGA-DD-A39Y-01	PSG9	ENST00000244293.7,ENST00000593948.1	chr19	43763008:43763287:43766011:43766290:43771935:43772301,43762353:43762608:43766011:43766290:43771935:43772301,	43766012	43766290	43766247	43766247	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A39Y-01	ETHE1	ENST00000602138.1,ENST00000292147.2,ENST00000600651.1	chr19	44015681:44015718:44030352:44030501:44030666:44030811,	44030353	44030501	44030461	44030461	Frame_Shift_Del	C	-	p.G89fs
LIHC	TCGA-DD-A39Y-01	XRCC1	ENST00000262887.5,ENST00000543982.1	chr19	44050203:44050258:44050746:44050879:44051035:44051129,	44050747	44050879	44050856	44050856	Frame_Shift_Del	G	-	p.P439fs
LIHC	TCGA-DD-A39Y-01	PLAUR	ENST00000340093.3	chr19	44152731:44153295:44156376:44156523:44160630:44160725,44150246:44150700:44156376:44156523:44159590:44159725,44152731:44153295:44156376:44156523:44159590:44159725,	44156377	44156523	44156402	44156402	Frame_Shift_Del	T	-	p.Q198fs
LIHC	TCGA-DD-A39Y-01	PLAUR	ENST00000340093.3	chr19	44152731:44153295:44156376:44156523:44160630:44160725,44150246:44150700:44156376:44156523:44159590:44159725,44152731:44153295:44156376:44156523:44159590:44159725,	44156377	44156523	44156433	44156433	Frame_Shift_Del	A	-	p.F188fs
LIHC	TCGA-DD-A39Y-01	PVR	ENST00000425690.3,ENST00000187830.2	chr19	45161029:45161178:45162009:45162168:45164558:45164590,	45162010	45162168	45162095	45162095	Frame_Shift_Del	G	-	p.L359fs
LIHC	TCGA-DD-A39Y-01	CLPTM1	ENST00000588855.1,ENST00000546079.1,ENST00000541297.2,ENST00000337392.5	chr19	45476343:45476467:45477695:45477854:45480599:45480717,	45477696	45477854	45477763	45477763	Frame_Shift_Del	G	-	p.W112fs
LIHC	TCGA-DD-A39Y-01	CLPTM1	ENST00000546079.1,ENST00000541297.2,ENST00000337392.5	chr19	45494107:45494203:45494495:45494631:45495490:45495658,	45494496	45494631	45494579	45494579	Frame_Shift_Del	G	-	p.K487fs
LIHC	TCGA-DD-A39Y-01	ERCC1	ENST00000013807.5,ENST00000589165.1,ENST00000300853.3,ENST00000591636.1,ENST00000588300.1,ENST00000340192.7,ENST00000592083.1,ENST00000592905.1,ENST00000589214.1,ENST00000592023.1	chr19	45923581:45923685:45924435:45924651:45926527:45926639,	45924436	45924651	45924537	45924537	Frame_Shift_Del	C	-	p.A74fs
LIHC	TCGA-DD-A39Y-01	VASP	ENST00000245932.6	chr19	46021186:46021352:46024579:46024664:46025425:46025475,	46024580	46024664	46024584	46024584	Frame_Shift_Del	T	-	p.G117fs
LIHC	TCGA-DD-A39Y-01	DMPK	ENST00000458663.2,ENST00000600757.1,ENST00000596686.1	chr19	46274228:46274318:46274607:46274654:46274825:46274923,46274228:46274314:46274607:46274654:46274825:46274923,	46274608	46274654	46274631	46274631	Frame_Shift_Del	G	-	p.R547fs
LIHC	TCGA-DD-A39Y-01	DMPK	ENST00000588522.1,ENST00000291270.4,ENST00000596686.1,ENST00000343373.4	chr19	46278206:46278292:46280584:46280848:46280924:46280981,	46280585	46280848	46280672	46280672	Frame_Shift_Del	G	-	p.P363fs
LIHC	TCGA-DD-A39Y-01	DMPK	ENST00000354227.5,ENST00000458663.2,ENST00000600757.1,ENST00000447742.2	chr19	46278206:46278292:46280599:46280848:46280924:46280981,	46280600	46280848	46280672	46280672	Frame_Shift_Del	G	-	p.P363fs
LIHC	TCGA-DD-A39Y-01	SYMPK	ENST00000598329.2,ENST00000593504.1,ENST00000600237.1,ENST00000245934.7,ENST00000598155.1	chr19	46320055:46320232:46321216:46321404:46324641:46324743,	46321217	46321404	46321352	46321352	Frame_Shift_Del	G	-	p.A982fs
LIHC	TCGA-DD-A39Y-01	SYMPK	ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46331094:46331176:46332227:46332463:46333311:46333462,	46332228	46332463	46332361	46332361	Frame_Shift_Del	G	-	p.L618fs
LIHC	TCGA-DD-A39Y-01	SYMPK	ENST00000600237.1	chr19	46331094:46331176:46332312:46332463:46333311:46333462,	46332313	46332463	46332361	46332361	Frame_Shift_Del	G	-	p.L618fs
LIHC	TCGA-DD-A39Y-01	SYMPK	ENST00000593504.1,ENST00000598896.1,ENST00000600237.1,ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46345507:46345747:46347287:46347458:46351009:46351259,	46347288	46347458	46347357	46347357	Frame_Shift_Del	G	-	p.L260fs
LIHC	TCGA-DD-A39Y-01	IGFL4	ENST00000601672.1	chr19	46543580:46543674:46543775:46543826:46544309:46544368,	46543776	46543826	46543810	46543810	Frame_Shift_Del	A	-	p.F12fs
LIHC	TCGA-DD-A39Y-01	HIF3A	ENST00000528563.1	chr19	46815417:46815524:46815762:46815910:46823699:46823818,46815417:46815524:46815762:46815910:46823703:46823818,	46815763	46815910	46815869	46815869	Frame_Shift_Del	C	-	p.G272fs
LIHC	TCGA-DD-A39Y-01	PRKD2	ENST00000291281.4,ENST00000601806.1,ENST00000595515.1,ENST00000600194.1,ENST00000433867.1	chr19	47204055:47204209:47204291:47204369:47207425:47207648,	47204292	47204369	47204310	47204310	Frame_Shift_Del	C	-	p.E317fs
LIHC	TCGA-DD-A39Y-01	STRN4	ENST00000595357.1,ENST00000435164.2,ENST00000391910.3	chr19	47228737:47228905:47230708:47230824:47231150:47231216,	47230709	47230824	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
LIHC	TCGA-DD-A39Y-01	STRN4	ENST00000601631.2,ENST00000263280.6,ENST00000539396.1,ENST00000594357.2	chr19	47228737:47228905:47230708:47230803:47231150:47231216,	47230709	47230803	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
LIHC	TCGA-DD-A39Y-01	STRN4	ENST00000600358.3,ENST00000602223.1	chr19	47228737:47228905:47230708:47230948:47231150:47231216,	47230709	47230948	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
LIHC	TCGA-DD-A39Y-01	SLC1A5	ENST00000594991.1,ENST00000412532.2,ENST00000542575.2,ENST00000593713.1,ENST00000434726.2	chr19	47281931:47282165:47285639:47285806:47287353:47287401,	47285640	47285806	47285707	47285707	Frame_Shift_Del	C	-	p.E253fs
LIHC	TCGA-DD-A39Y-01	SAE1	ENST00000270225.7,ENST00000414294.2,ENST00000413379.3,ENST00000594144.1,ENST00000596995.1,ENST00000392776.3,ENST00000597808.1,ENST00000600706.1	chr19	47653458:47653632:47656154:47656297:47658370:47658434,	47656155	47656297	47656243	47656243	Frame_Shift_Del	T	-	p.V158fs
LIHC	TCGA-DD-A39Y-01	DHX34	ENST00000328771.4,ENST00000460681.1	chr19	47884072:47884249:47884442:47884581:47885236:47885536,	47884443	47884581	47884512	47884512	Frame_Shift_Del	C	-	p.P1077fs
LIHC	TCGA-DD-A39Y-01	DHX34	ENST00000328771.4,ENST00000460681.1	chr19	47884072:47884249:47884442:47884581:47885236:47885536,	47884443	47884581	47884575	47884575	Frame_Shift_Del	C	-	p.P1099fs
LIHC	TCGA-DD-A39Y-01	ZNF541	ENST00000391901.3,ENST00000314121.4,ENST00000595558.1	chr19	48025110:48025251:48032206:48032295:48032833:48032909,	48032207	48032295	48032258	48032258	Frame_Shift_Del	A	-	p.F1192fs
LIHC	TCGA-DD-A39Y-01	ELSPBP1	ENST00000339841.2	chr19	48523061:48523134:48525426:48525591:48528208:48528391,	48525427	48525591	48525477	48525477	Frame_Shift_Del	A	-	p.K189fs
LIHC	TCGA-DD-A39Y-01	ELSPBP1	ENST00000593782.1	chr19	48523061:48523134:48525426:48525633:48528208:48528391,	48525427	48525633	48525477	48525477	Frame_Shift_Del	A	-	p.K189fs
LIHC	TCGA-DD-A39Y-01	PLA2G4C	ENST00000599300.1	chr19	48581027:48581081:48588315:48588369:48591942:48591969,48581027:48581081:48588315:48588369:48593620:48593666,	48588316	48588369	48588337	48588337	Frame_Shift_Del	T	-	p.S275fs
LIHC	TCGA-DD-A39Y-01	LIG1	ENST00000601091.1,ENST00000594067.1,ENST00000263274.7,ENST00000536218.1,ENST00000594759.1,ENST00000427526.2	chr19	48636238:48636354:48637237:48637323:48638936:48638979,	48637238	48637323	48637293	48637293	Frame_Shift_Del	G	-	p.P518fs
LIHC	TCGA-DD-A39Y-01	LIG1	ENST00000601091.1,ENST00000594067.1,ENST00000263274.7,ENST00000536218.1,ENST00000594759.1,ENST00000427526.2,ENST00000597901.1	chr19	48639010:48639036:48639290:48639382:48640264:48640341,	48639291	48639382	48639309	48639309	Frame_Shift_Del	G	-	p.L469fs
LIHC	TCGA-DD-A39Y-01	CARD8	ENST00000518622.1,ENST00000447740.2,ENST00000521613.1,ENST00000517510.1,ENST00000359009.4,ENST00000522773.1,ENST00000519646.1,ENST00000519940.1,ENST00000520153.1,ENST00000523579.1,ENST00000521415.1,ENST00000391898.3,ENST00000522051.1,ENST00000357778.5	chr19	48718596:48718641:48722127:48722269:48724986:48725112,	48722128	48722269	48722192	48722192	Frame_Shift_Del	G	-	p.P413fs
LIHC	TCGA-DD-A39Y-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132288	49132288	Frame_Shift_Del	C	-	p.A470fs
LIHC	TCGA-DD-A39Y-01	NTN5	ENST00000600468.1	chr19	49167835:49168024:49173612:49174263:49176188:49176264,	49173613	49174263	49173634	49173634	Frame_Shift_Del	G	-	p.R204fs
LIHC	TCGA-DD-A39Y-01	NUCB1	ENST00000405315.4,ENST00000452087.1,ENST00000407032.1,ENST00000263273.5	chr19	49407636:49407711:49409009:49409142:49414405:49414509,	49409010	49409142	49409076	49409076	Frame_Shift_Del	A	-	p.K104fs
LIHC	TCGA-DD-A39Y-01	NUCB1	ENST00000492367.1,ENST00000405315.4,ENST00000407032.1,ENST00000263273.5,ENST00000485798.1	chr19	49424410:49424581:49425083:49425189:49425574:49425722,	49425084	49425189	49425142	49425142	Frame_Shift_Del	C	-	p.A411fs
LIHC	TCGA-DD-A39Y-01	FTL	ENST00000331825.6	chr19	49469026:49469173:49469537:49469663:49469839:49469850,	49469538	49469663	49469601	49469601	Frame_Shift_Del	A	-	p.K106fs
LIHC	TCGA-DD-A39Y-01	GYS1	ENST00000457974.1	chr19	49490450:49490642:49494558:49494795:49496251:49496329,	49494559	49494795	49494661	49494661	Frame_Shift_Del	C	-	p.G66fs
LIHC	TCGA-DD-A39Y-01	SNRNP70	ENST00000598441.1,ENST00000401730.1,ENST00000597936.1,ENST00000595231.1,ENST00000221448.5	chr19	49588751:49588893:49589661:49589818:49593547:49593610,	49589662	49589818	49589712	49589712	Frame_Shift_Del	C	-	p.A14fs
LIHC	TCGA-DD-A39Y-01	CD37	ENST00000426897.2,ENST00000323906.4,ENST00000391859.2,ENST00000595725.1	chr19	49841986:49842193:49842586:49842670:49842914:49843284,49842109:49842193:49842586:49842670:49843507:49843723,	49842587	49842670	49842598	49842598	Frame_Shift_Del	G	-	p.Q232fs
LIHC	TCGA-DD-A39Y-01	TEAD2	ENST00000311227.2	chr19	49862691:49862756:49863100:49863338:49865589:49865639,49862691:49862756:49863100:49863338:49865629:49865698,	49863101	49863338	49863236	49863236	Frame_Shift_Del	C	-	p.A33fs
LIHC	TCGA-DD-A39Y-01	PIH1D1	ENST00000599366.1	chr19	49951257:49951319:49952596:49952911:49954038:49954093,	49952597	49952911	49952872	49952872	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-DD-A39Y-01	PIH1D1	ENST00000597415.1,ENST00000601807.1,ENST00000262265.5,ENST00000596049.1,ENST00000593900.1,ENST00000595516.1	chr19	49951261:49951319:49952731:49952911:49954038:49954093,	49952732	49952911	49952872	49952872	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-DD-A39Y-01	ALDH16A1	ENST00000433981.2,ENST00000593417.1	chr19	49956555:49956678:49962926:49963105:49964078:49964156,	49962927	49963105	49963074	49963074	Frame_Shift_Del	G	-	p.Q156fs
LIHC	TCGA-DD-A39Y-01	RPL13A	ENST00000479992.1,ENST00000484279.1,ENST00000477613.2,ENST00000391857.4	chr19	49993785:49993833:49994035:49994121:49994296:49994347,	49994036	49994121	49994110	49994110	Frame_Shift_Del	C	-	p.P111fs
LIHC	TCGA-DD-A39Y-01	SCAF1	ENST00000601038.1,ENST00000595242.1,ENST00000360565.3,ENST00000598359.1	chr19	50148277:50148391:50148610:50148668:50149364:50149459,	50148611	50148668	50148646	50148646	Frame_Shift_Del	G	-	p.Q48fs
LIHC	TCGA-DD-A39Y-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156365	50156365	Frame_Shift_Del	G	-	p.G907fs
LIHC	TCGA-DD-A39Y-01	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165251	50165251	Frame_Shift_Del	G	-	p.P312fs
LIHC	TCGA-DD-A39Y-01	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165251	50165251	Frame_Shift_Del	G	-	p.P312fs
LIHC	TCGA-DD-A39Y-01	MED25	ENST00000312865.6,ENST00000595185.1	chr19	50321827:50321873:50322428:50322553:50331705:50331804,	50322429	50322553	50322432	50322432	Frame_Shift_Del	G	-	p.G63fs
LIHC	TCGA-DD-A39Y-01	MED25	ENST00000312865.6,ENST00000538643.1	chr19	50333767:50333855:50333950:50334144:50334589:50334718,	50333951	50334144	50334028	50334028	Frame_Shift_Del	C	-	p.P330fs
LIHC	TCGA-DD-A39Y-01	AKT1S1	ENST00000391832.3,ENST00000391835.1,ENST00000344175.5,ENST00000391831.1,ENST00000391834.2	chr19	50374803:50374973:50375068:50375146:50376173:50376559,	50375069	50375146	50375100	50375100	Frame_Shift_Del	G	-	p.P142fs
LIHC	TCGA-DD-A39Y-01	MYH14	ENST00000425460.1,ENST00000262269.8,ENST00000598205.1,ENST00000440075.2,ENST00000596571.1,ENST00000599920.1,ENST00000601313.1,ENST00000376970.2	chr19	50730159:50730223:50733781:50733880:50735186:50735327,	50733782	50733880	50733855	50733855	Frame_Shift_Del	G	-	p.L316fs
LIHC	TCGA-DD-A39Y-01	NR1H2	ENST00000597790.1,ENST00000598168.1,ENST00000597130.1,ENST00000542413.1,ENST00000597157.1,ENST00000253727.5,ENST00000599105.1,ENST00000593532.1,ENST00000593926.1	chr19	50880843:50880905:50880989:50881127:50881405:50881569,	50880990	50881127	50880997	50880997	Frame_Shift_Del	C	-	p.G17fs
LIHC	TCGA-DD-A39Y-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000599857.1,ENST00000595904.1	chr19	50905034:50905181:50905255:50905381:50905461:50905630,	50905256	50905381	50905324	50905324	Frame_Shift_Del	G	-	p.G179fs
LIHC	TCGA-DD-A39Y-01	ASPDH	ENST00000389208.4	chr19	51015616:51015837:51015917:51016067:51016183:51016268,	51015918	51016067	51015925	51015925	Frame_Shift_Del	C	-	p.G142fs
LIHC	TCGA-DD-A39Y-01	SHANK1	ENST00000293441.1,ENST00000391814.1	chr19	51192453:51192536:51200352:51200379:51200845:51200921,	51200353	51200379	51200359	51200359	Frame_Shift_Del	G	-	p.P653fs
LIHC	TCGA-DD-A39Y-01	KLK6	ENST00000391808.1,ENST00000594641.1,ENST00000376851.3,ENST00000310157.2,ENST00000599690.1	chr19	51464999:51465136:51466557:51466805:51470424:51470581,	51466558	51466805	51466736	51466736	Frame_Shift_Del	A	-	p.V90fs
LIHC	TCGA-DD-A39Y-01	KLK10	ENST00000391805.1,ENST00000358789.3,ENST00000601467.1,ENST00000309958.3	chr19	51518672:51518806:51519137:51519412:51520365:51520546,	51519138	51519412	51519311	51519311	Frame_Shift_Del	C	-	p.G124fs
LIHC	TCGA-DD-A39Y-01	KLK12	ENST00000531374.1	chr19	51534114:51534177:51535035:51535391:51537235:51537395,	51535036	51535391	51535204	51535204	Frame_Shift_Del	G	-	p.L129fs
LIHC	TCGA-DD-A39Y-01	KLK12	ENST00000319590.4,ENST00000525263.1,ENST00000250351.4	chr19	51534114:51534177:51535131:51535391:51537235:51537395,	51535132	51535391	51535204	51535204	Frame_Shift_Del	G	-	p.L129fs
LIHC	TCGA-DD-A39Y-01	SIGLEC9	ENST00000440804.3	chr19	51628164:51628652:51628853:51629132:51629337:51629385,	51628854	51629132	51629035	51629035	Frame_Shift_Del	C	-	p.I201fs
LIHC	TCGA-DD-A39Y-01	CD33	ENST00000391796.3,ENST00000262262.4	chr19	51728353:51728411:51728473:51728854:51729058:51729337,	51728474	51728854	51728796	51728796	Frame_Shift_Del	G	-	p.M120fs
LIHC	TCGA-DD-A39Y-01	SIGLEC10	ENST00000339313.5,ENST00000353836.5,ENST00000356298.5,ENST00000525998.1,ENST00000432469.2	chr19	51919919:51920204:51920335:51920719:51920798:51920965,	51920336	51920719	51920403	51920403	Frame_Shift_Del	A	-	p.F118fs
LIHC	TCGA-DD-A39Y-01	SIGLEC10	ENST00000530476.1	chr19	51919919:51920204:51920335:51920612:51920798:51920965,	51920336	51920612	51920403	51920403	Frame_Shift_Del	A	-	p.F118fs
LIHC	TCGA-DD-A39Y-01	SIGLEC6	ENST00000343300.4,ENST00000391797.3	chr19	52023252:52023509:52032977:52033235:52033690:52033738,	52032978	52033235	52033227	52033227	Frame_Shift_Del	T	-	p.I239fs
LIHC	TCGA-DD-A39Y-01	PPP2R1A	ENST00000462990.1,ENST00000473820.1,ENST00000322088.6,ENST00000444322.2	chr19	52719256:52719327:52719781:52719916:52722943:52722987,	52719782	52719916	52719910	52719910	Frame_Shift_Del	G	-	p.K374fs
LIHC	TCGA-DD-A39Y-01	PPP2R1A	ENST00000462990.1,ENST00000322088.6,ENST00000444322.2	chr19	52719781:52719916:52722943:52723117:52723441:52723502,	52722944	52723117	52722976	52722976	Frame_Shift_Del	C	-	p.N387fs
LIHC	TCGA-DD-A39Y-01	ZNF480	ENST00000335090.6	chr19	52817405:52817532:52819086:52819215:52824831:52824900,52803646:52803737:52819086:52819215:52824831:52824900,	52819087	52819215	52819132	52819132	Frame_Shift_Del	G	-	p.R83fs
LIHC	TCGA-DD-A39Y-01	ZNF610	ENST00000327920.8,ENST00000403906.3,ENST00000321287.8	chr19	52856934:52857061:52857503:52857632:52868950:52870111,	52857504	52857632	52857528	52857528	Frame_Shift_Del	T	-	p.I73fs
LIHC	TCGA-DD-A39Y-01	ZNF415	ENST00000598578.1,ENST00000600120.1	chr19	53618510:53618585:53618956:53619177:53619565:53619686,53613129:53613161:53618956:53619177:53619565:53619686,	53618957	53619177	53619030	53619030	Frame_Shift_Del	G	-	p.P57fs
LIHC	TCGA-DD-A39Y-01	ZNF415	ENST00000440291.1	chr19	53618462:53618560:53618956:53619064:53619565:53619686,53618510:53618585:53618956:53619064:53619565:53619686,53613129:53613161:53618956:53619064:53619565:53619686,	53618957	53619064	53619030	53619030	Frame_Shift_Del	G	-	p.P57fs
LIHC	TCGA-DD-A39Y-01	CNOT3	ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54647472:54647485:54647741:54647870:54647972:54648068,	54647742	54647870	54647778	54647778	Frame_Shift_Del	A	-	p.K99fs
LIHC	TCGA-DD-A39Y-01	CNOT3	ENST00000482247.1,ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54650336:54650393:54651882:54652270:54652354:54652432,	54651883	54652270	54651966	54651966	Frame_Shift_Del	C	-	p.G326fs
LIHC	TCGA-DD-A39Y-01	TMC4	ENST00000376591.4,ENST00000301187.4	chr19	54667455:54667619:54668167:54668335:54669152:54669300,	54668168	54668335	54668254	54668254	Frame_Shift_Del	C	-	p.V349fs
LIHC	TCGA-DD-A39Y-01	TMC4	ENST00000376591.4,ENST00000301187.4,ENST00000446291.1,ENST00000476013.2	chr19	54671896:54672018:54672173:54672406:54673249:54673398,	54672174	54672406	54672303	54672303	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-DD-A39Y-01	RPS9	ENST00000495002.1	chr19	54705354:54705477:54710143:54710592:54711265:54711278,	54710144	54710592	54710370	54710370	Frame_Shift_Del	C	-	p.C149fs
LIHC	TCGA-DD-A39Y-01	LILRB2	ENST00000314446.5,ENST00000391748.1	chr19	54781403:54781454:54781742:54781793:54782113:54782398,54781403:54781451:54781742:54781793:54782113:54782398,	54781743	54781793	54781769	54781769	Frame_Shift_Del	G	-	p.P429fs
LIHC	TCGA-DD-A39Y-01	LILRB1	ENST00000396315.1,ENST00000396332.4,ENST00000427581.2,ENST00000324602.7	chr19	55147007:55147060:55147944:55148103:55148182:55148470,	55147945	55148103	55147993	55147993	Frame_Shift_Del	A	-	p.K566fs
LIHC	TCGA-DD-A39Y-01	LILRB1	ENST00000396331.1,ENST00000434867.2,ENST00000396327.3,ENST00000421584.1,ENST00000396321.2,ENST00000396317.1,ENST00000448689.1,ENST00000418536.2	chr19	55147007:55147060:55147947:55148103:55148182:55148470,	55147948	55148103	55147993	55147993	Frame_Shift_Del	A	-	p.K566fs
LIHC	TCGA-DD-A39Y-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451618	55451618	Frame_Shift_Del	T	-	p.K218fs
LIHC	TCGA-DD-A39Y-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451634	55451634	Frame_Shift_Del	T	-	p.T214fs
LIHC	TCGA-DD-A39Y-01	DNAAF3	ENST00000534214.1,ENST00000528412.1	chr19	55676737:55676831:55677149:55677368:55677696:55677785,	55677150	55677368	55677319	55677319	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-DD-A39Y-01	DNAAF3	ENST00000526003.1,ENST00000391720.4,ENST00000524407.2	chr19	55676737:55676831:55677225:55677368:55677696:55677785,	55677226	55677368	55677319	55677319	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-DD-A39Y-01	DNAAF3	ENST00000527223.2	chr19	55676737:55676831:55677225:55677431:55677696:55677785,	55677226	55677431	55677319	55677319	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-DD-A39Y-01	PTPRH	ENST00000376350.3,ENST00000263434.5	chr19	55698880:55698971:55699445:55699536:55702868:55702916,	55699446	55699536	55699519	55699519	Frame_Shift_Del	G	-	p.P801fs
LIHC	TCGA-DD-A39Y-01	PTPRH	ENST00000376350.3,ENST00000588559.1	chr19	55711603:55711870:55713423:55713690:55715149:55715416,	55713424	55713690	55713470	55713470	Frame_Shift_Del	C	-	p.G369fs
LIHC	TCGA-DD-A39Y-01	PTPRH	ENST00000376350.3,ENST00000588559.1	chr19	55713423:55713690:55715149:55715416:55716693:55716960,	55715150	55715416	55715269	55715269	Frame_Shift_Del	T	-	p.N256fs
LIHC	TCGA-DD-A39Y-01	PPP6R1	ENST00000591323.1,ENST00000412770.2,ENST00000587283.1	chr19	55751603:55751668:55752312:55752447:55752606:55752759,	55752313	55752447	55752395	55752395	Frame_Shift_Del	C	-	p.G405fs
LIHC	TCGA-DD-A39Y-01	PPP6R1	ENST00000591323.1,ENST00000412770.2,ENST00000587283.1	chr19	55752606:55752759:55752844:55753007:55753533:55753647,	55752845	55753007	55752888	55752888	Frame_Shift_Del	G	-	p.P322fs
LIHC	TCGA-DD-A39Y-01	U2AF2	ENST00000308924.4,ENST00000450554.2	chr19	56172403:56172555:56173867:56173984:56174971:56175110,	56173868	56173984	56173906	56173906	Frame_Shift_Del	G	-	p.L175fs
LIHC	TCGA-DD-A39Y-01	U2AF2	ENST00000590551.1,ENST00000450554.2	chr19	56180035:56180158:56180448:56180535:56180809:56181058,	56180449	56180535	56180478	56180478	Frame_Shift_Del	G	-	p.L325fs
LIHC	TCGA-DD-A39Y-01	U2AF2	ENST00000308924.4	chr19	56180035:56180158:56180448:56180547:56180809:56181058,	56180449	56180547	56180478	56180478	Frame_Shift_Del	G	-	p.L325fs
LIHC	TCGA-DD-A39Y-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56204319:56204403:56206091:56206349:56206513:56206631,	56206092	56206349	56206220	56206220	Frame_Shift_Del	C	-	p.P552fs
LIHC	TCGA-DD-A39Y-01	ZNF304	ENST00000391705.3,ENST00000282286.5	chr19	57862859:57863065:57865092:57865219:57867397:57870148,	57865093	57865219	57865158	57865158	Frame_Shift_Del	G	-	p.E33fs
LIHC	TCGA-DD-A39Y-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438230	58438230	Frame_Shift_Del	T	-	p.N440fs
LIHC	TCGA-DD-A39Y-01	SLC27A5	ENST00000595851.1	chr19	58994898:58995013:59009860:59010058:59010151:59010282,	59009861	59010058	59010029	59010029	Frame_Shift_Del	T	-	p.K642fs
LIHC	TCGA-DD-A39Y-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	469321:469422:470423:470525:472897:473008,	470424	470525	470449	470449	Frame_Shift_Del	A	-	p.F233fs
LIHC	TCGA-DD-A39Y-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	472897:473008:476362:476446:478364:478424,	476363	476446	476395	476395	Frame_Shift_Del	G	-	p.H160fs
LIHC	TCGA-DD-A39Y-01	PSMF1	ENST00000484891.1,ENST00000333082.3,ENST00000335877.6	chr20	1143773:1143827:1144961:1145120:1145672:1145703,	1144962	1145120	1145059	1145059	Frame_Shift_Del	G	-	p.G235fs
LIHC	TCGA-DD-A39Y-01	RAD21L1	ENST00000409241.1	chr20	1224689:1224814:1226853:1226949:1229269:1229347,	1226854	1226949	1226877	1226877	Frame_Shift_Del	T	-	p.S444fs
LIHC	TCGA-DD-A39Y-01	RAD21L1	ENST00000409241.1	chr20	1224689:1224814:1226853:1226949:1229269:1229347,	1226854	1226949	1226924	1226924	Frame_Shift_Del	A	-	p.E460fs
LIHC	TCGA-DD-A39Y-01	SDCBP2	ENST00000360779.3,ENST00000381812.1,ENST00000339987.3	chr20	1298961:1299062:1300233:1300303:1301006:1301079,	1300234	1300303	1300242	1300242	Frame_Shift_Del	G	-	p.P41fs
LIHC	TCGA-DD-A39Y-01	TGM6	ENST00000202625.2	chr20	2411091:2411246:2411539:2411673:2413135:2413399,	2411540	2411673	2411560	2411560	Frame_Shift_Del	G	-	p.V618fs
LIHC	TCGA-DD-A39Y-01	IDH3B	ENST00000380851.5,ENST00000474315.1,ENST00000380843.4	chr20	2640908:2641011:2641102:2641236:2641342:2641475,	2641103	2641236	2641141	2641141	Frame_Shift_Del	C	-	p.G209fs
LIHC	TCGA-DD-A39Y-01	IDH3B	ENST00000488299.1	chr20	2640908:2641011:2641102:2641475:2641554:2641615,	2641103	2641475	2641141	2641141	Frame_Shift_Del	C	-	p.G209fs
LIHC	TCGA-DD-A39Y-01	PTPRA	ENST00000425918.2,ENST00000399903.2,ENST00000358719.4,ENST00000356147.3,ENST00000380393.3,ENST00000318266.5,ENST00000216877.6	chr20	2968983:2969120:2985701:2985792:2987989:2988066,	2985702	2985792	2985763	2985763	Frame_Shift_Del	A	-	p.E258fs
LIHC	TCGA-DD-A39Y-01	C20orf194	ENST00000252032.9,ENST00000453730.2	chr20	3297369:3297440:3298935:3299047:3302863:3302909,	3298936	3299047	3298965	3298965	Frame_Shift_Del	A	-	p.L480fs
LIHC	TCGA-DD-A39Y-01	ADAM33	ENST00000350009.2,ENST00000356518.2,ENST00000466620.1,ENST00000379861.4	chr20	3649945:3650017:3650192:3650284:3651652:3651800,	3650193	3650284	3650215	3650215	Frame_Shift_Del	G	-	p.A770fs
LIHC	TCGA-DD-A39Y-01	ADAM33	ENST00000350009.2,ENST00000356518.2,ENST00000466620.1,ENST00000379861.4	chr20	3652523:3652632:3652780:3652976:3653183:3653273,	3652781	3652976	3652939	3652939	Frame_Shift_Del	C	-	p.G480fs
LIHC	TCGA-DD-A39Y-01	PANK2	ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3897573:3897697:3899317:3899443:3903890:3904349,	3899318	3899443	3899410	3899410	Frame_Shift_Del	G	-	p.K252fs
LIHC	TCGA-DD-A39Y-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163024	4163024	Frame_Shift_Del	C	-	p.P300fs
LIHC	TCGA-DD-A39Y-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163028	4163028	Frame_Shift_Del	G	-	p.R301fs
LIHC	TCGA-DD-A39Y-01	MCM8	ENST00000265187.4,ENST00000378896.3	chr20	5952652:5952683:5953701:5953842:5958521:5958663,	5953702	5953842	5953822	5953822	Frame_Shift_Del	G	-	p.G459fs
LIHC	TCGA-DD-A39Y-01	CRLS1	ENST00000378868.4,ENST00000378863.4	chr20	5996006:5996136:6011930:6012016:6012657:6012726,	6011931	6012016	6011982	6011982	Frame_Shift_Del	T	-	p.V209fs
LIHC	TCGA-DD-A39Y-01	FERMT1	ENST00000217289.4,ENST00000478194.1,ENST00000536936.1	chr20	6064686:6064811:6065712:6065934:6068423:6068530,	6065713	6065934	6065885	6065885	Frame_Shift_Del	C	-	p.G474fs
LIHC	TCGA-DD-A39Y-01	FERMT1	ENST00000536936.1	chr20	6078170:6078278:6088178:6088281:6090944:6091158,6078170:6078278:6088178:6088281:6093123:6093270,	6088179	6088281	6088183	6088183	Frame_Shift_Del	G	-	p.P282fs
LIHC	TCGA-DD-A39Y-01	FERMT1	ENST00000217289.4	chr20	6088178:6088281:6090944:6091158:6093123:6093270,	6090945	6091158	6091015	6091015	Frame_Shift_Del	G	-	p.Q226fs
LIHC	TCGA-DD-A39Y-01	FERMT1	ENST00000536936.1	chr20	6096457:6096691:6100067:6100219:6103420:6103677,	6100068	6100219	6100139	6100139	Frame_Shift_Del	G	-	p.P21fs
LIHC	TCGA-DD-A39Y-01	FERMT1	ENST00000217289.4	chr20	6096457:6096691:6100050:6100219:6103420:6103677,	6100051	6100219	6100139	6100139	Frame_Shift_Del	G	-	p.P21fs
LIHC	TCGA-DD-A39Y-01	TMX4	ENST00000527925.1,ENST00000246024.2	chr20	7964440:7964504:7967934:7968036:7976672:7976718,	7967935	7968036	7967975	7967975	Frame_Shift_Del	A	-	p.F192fs
LIHC	TCGA-DD-A39Y-01	PLCB4	ENST00000482123.1,ENST00000473151.1	chr20	9351860:9351942:9352949:9353050:9360700:9360809,	9352950	9353050	9352974	9352974	Frame_Shift_Del	T	-	p.F204fs
LIHC	TCGA-DD-A39Y-01	TASP1	ENST00000337743.4,ENST00000480436.1,ENST00000539805.1	chr20	13398094:13398168:13415690:13415801:13463873:13463984,	13415691	13415801	13415708	13415708	Frame_Shift_Del	T	-	p.N360fs
LIHC	TCGA-DD-A39Y-01	TASP1	ENST00000337743.4,ENST00000480436.1,ENST00000465381.1	chr20	13561543:13561628:13567896:13568017:13604092:13604161,	13567897	13568017	13567989	13567989	Frame_Shift_Del	C	-	p.G104fs
LIHC	TCGA-DD-A39Y-01	MACROD2	ENST00000477147.1,ENST00000494602.1,ENST00000490428.1,ENST00000217246.4,ENST00000310348.4	chr20	13982933:13983050:14066266:14066374:14474124:14474154,	14066267	14066374	14066312	14066312	Frame_Shift_Del	A	-	p.E70fs
LIHC	TCGA-DD-A39Y-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639507	17639507	Frame_Shift_Del	T	-	p.K549fs
LIHC	TCGA-DD-A39Y-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639813	17639813	Frame_Shift_Del	T	-	p.N447fs
LIHC	TCGA-DD-A39Y-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639820	17639820	Frame_Shift_Del	C	-	p.A445fs
LIHC	TCGA-DD-A39Y-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640971	17640971	Frame_Shift_Del	T	-	p.K62fs
LIHC	TCGA-DD-A39Y-01	DZANK1	ENST00000358866.6,ENST00000377630.5,ENST00000262547.5,ENST00000329494.5,ENST00000609267.1,ENST00000357236.4,ENST00000608192.1,ENST00000460891.1	chr20	18435890:18436005:18440796:18440950:18445893:18445986,	18440797	18440950	18440825	18440825	Frame_Shift_Del	T	-	p.I79fs
LIHC	TCGA-DD-A39Y-01	DZANK1	ENST00000358866.6,ENST00000377630.5,ENST00000262547.5,ENST00000329494.5,ENST00000609267.1,ENST00000357236.4,ENST00000608192.1,ENST00000460891.1	chr20	18435890:18436005:18440796:18440950:18445893:18445986,	18440797	18440950	18440882	18440882	Frame_Shift_Del	A	-	p.Y60fs
LIHC	TCGA-DD-A39Y-01	SEC23B	ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000450074.1,ENST00000262544.2	chr20	18496293:18496380:18505076:18505313:18505578:18505664,	18505077	18505313	18505079	18505079	Frame_Shift_Del	A	-	p.R123fs
LIHC	TCGA-DD-A39Y-01	RIN2	ENST00000255006.6,ENST00000440354.2,ENST00000484638.1	chr20	19972811:19972943:19977322:19977486:19981256:19981992,	19977323	19977486	19977465	19977465	Frame_Shift_Del	C	-	p.I830fs
LIHC	TCGA-DD-A39Y-01	RALGAPA2	ENST00000202677.7,ENST00000424981.1	chr20	20616061:20616261:20618006:20618145:20620428:20620544,	20618007	20618145	20618041	20618041	Frame_Shift_Del	A	-	p.F257fs
LIHC	TCGA-DD-A39Y-01	SYNDIG1	ENST00000376862.3	chr20	24523655:24524213:24565491:24565629:24645981:24646176,	24565492	24565629	24565540	24565540	Frame_Shift_Del	C	-	p.P178fs
LIHC	TCGA-DD-A39Y-01	ABHD12	ENST00000339157.5,ENST00000376542.3	chr20	25303960:25304066:25319862:25319987:25371148:25371389,	25319863	25319987	25319915	25319915	Frame_Shift_Del	A	-	p.F88fs
LIHC	TCGA-DD-A39Y-01	GINS1	ENST00000262460.4	chr20	25397739:25397838:25398740:25398831:25405846:25405963,	25398741	25398831	25398819	25398819	Frame_Shift_Del	G	-	p.M106fs
LIHC	TCGA-DD-A39Y-01	TTLL9	ENST00000375922.4,ENST00000375921.2,ENST00000310998.4	chr20	30512811:30512852:30513675:30513763:30521602:30521661,	30513676	30513763	30513735	30513735	Frame_Shift_Del	C	-	p.R182fs
LIHC	TCGA-DD-A39Y-01	COMMD7	ENST00000278980.6,ENST00000446419.2,ENST00000610160.1	chr20	31291824:31291873:31292241:31292291:31292615:31292706,	31292242	31292291	31292246	31292246	Frame_Shift_Del	A	-	p.L157fs
LIHC	TCGA-DD-A39Y-01	EFCAB8	ENST00000400522.4	chr20	31473310:31473446:31477106:31477212:31480018:31480103,	31477107	31477212	31477189	31477189	Frame_Shift_Del	T	-	p.V217fs
LIHC	TCGA-DD-A39Y-01	BPIFB2	ENST00000170150.3	chr20	31596353:31596489:31598829:31598923:31600608:31600713,	31598830	31598923	31598848	31598848	Frame_Shift_Del	C	-	p.A43fs
LIHC	TCGA-DD-A39Y-01	CBFA2T2	ENST00000491618.1	chr20	32210920:32211102:32211578:32211660:32212569:32212823,	32211579	32211660	32211627	32211627	Frame_Shift_Del	T	-	p.Y227fs
LIHC	TCGA-DD-A39Y-01	CBFA2T2	ENST00000491618.1,ENST00000492345.1,ENST00000346541.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32216155:32216241:32217524:32217720:32224445:32224468,	32217525	32217720	32217624	32217624	Frame_Shift_Del	A	-	p.K387fs
LIHC	TCGA-DD-A39Y-01	PXMP4	ENST00000344022.3	chr20	32295294:32295775:32302479:32302542:32307900:32308106,	32302480	32302542	32302529	32302529	Frame_Shift_Del	T	-	p.I43fs
LIHC	TCGA-DD-A39Y-01	ITCH	ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33059305:33059320:33065576:33065665:33067434:33067594,	33065577	33065665	33065623	33065623	Frame_Shift_Del	T	-	p.I539fs
LIHC	TCGA-DD-A39Y-01	ITCH	ENST00000483727.1	chr20	33059305:33059320:33065576:33065711:33067434:33067594,	33065577	33065711	33065623	33065623	Frame_Shift_Del	T	-	p.I539fs
LIHC	TCGA-DD-A39Y-01	PIGU	ENST00000438215.1,ENST00000452740.2,ENST00000374820.2,ENST00000217446.3	chr20	33162907:33163050:33169351:33169476:33173240:33173284,	33169352	33169476	33169403	33169403	Frame_Shift_Del	C	-	p.D314fs
LIHC	TCGA-DD-A39Y-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33328784	33328784	Frame_Shift_Del	G	-	p.P1759fs
LIHC	TCGA-DD-A39Y-01	ACSS2	ENST00000253382.5	chr20	33502125:33502240:33503020:33503059:33507237:33507375,	33503021	33503059	33503054	33503054	Frame_Shift_Del	C	-	p.P290fs
LIHC	TCGA-DD-A39Y-01	MYH7B	ENST00000262873.7	chr20	33568835:33568863:33570261:33570358:33572494:33572518,	33570262	33570358	33570271	33570271	Frame_Shift_Del	G	-	p.S221fs
LIHC	TCGA-DD-A39Y-01	EDEM2	ENST00000541621.1,ENST00000374492.3,ENST00000374491.3,ENST00000542871.1	chr20	33703169:33703736:33706400:33706522:33711692:33711837,	33706401	33706522	33706430	33706430	Frame_Shift_Del	T	-	p.I362fs
LIHC	TCGA-DD-A39Y-01	EDEM2	ENST00000541621.1,ENST00000374492.3,ENST00000374491.3,ENST00000540582.1,ENST00000542871.1	chr20	33711692:33711837:33714053:33714178:33719444:33719586,	33714054	33714178	33714108	33714108	Frame_Shift_Del	C	-	p.G264fs
LIHC	TCGA-DD-A39Y-01	CEP250	ENST00000461386.1,ENST00000342580.4,ENST00000397527.1	chr20	34055128:34055380:34057714:34057811:34059874:34059955,	34057715	34057811	34057771	34057771	Frame_Shift_Del	A	-	p.E303fs
LIHC	TCGA-DD-A39Y-01	SPAG4	ENST00000454819.1,ENST00000463973.1,ENST00000374273.3	chr20	34205057:34205162:34205441:34205508:34205700:34205762,	34205442	34205508	34205455	34205455	Frame_Shift_Del	G	-	p.Q141fs
LIHC	TCGA-DD-A39Y-01	SPAG4	ENST00000468248.1	chr20	34205057:34205162:34205441:34205762:34206008:34206052,	34205442	34205762	34205455	34205455	Frame_Shift_Del	G	-	p.Q141fs
LIHC	TCGA-DD-A39Y-01	NFS1	ENST00000374092.4,ENST00000541387.1,ENST00000374085.1,ENST00000397425.1,ENST00000489163.1,ENST00000540053.1	chr20	34262433:34262539:34262966:34263124:34268658:34268793,	34262967	34263124	34263057	34263057	Frame_Shift_Del	C	-	p.G286fs
LIHC	TCGA-DD-A39Y-01	NFS1	ENST00000374092.4,ENST00000374085.1,ENST00000397425.1,ENST00000440385.1	chr20	34269886:34269903:34278334:34278487:34284298:34284382,	34278335	34278487	34278439	34278439	Frame_Shift_Del	G	-	p.Q153fs
LIHC	TCGA-DD-A39Y-01	RBM39	ENST00000403542.2,ENST00000253363.6,ENST00000494274.1,ENST00000429968.1,ENST00000361162.6,ENST00000461283.1,ENST00000463004.1,ENST00000492779.1,ENST00000528062.3,ENST00000444878.1,ENST00000490484.2,ENST00000407261.4,ENST00000338163.6	chr20	34302106:34302311:34304661:34304727:34309661:34309795,	34304662	34304727	34304678	34304678	Frame_Shift_Del	C	-	p.G292fs
LIHC	TCGA-DD-A39Y-01	PHF20	ENST00000374000.4,ENST00000481202.1,ENST00000439301.1,ENST00000339089.6,ENST00000374012.3	chr20	34459571:34459751:34487291:34487570:34501170:34501238,	34487292	34487570	34487389	34487389	Frame_Shift_Del	A	-	p.L460fs
LIHC	TCGA-DD-A39Y-01	AAR2	ENST00000320849.4	chr20	34824386:34824425:34827742:34828547:34832618:34832848,	34827743	34828547	34827887	34827887	Frame_Shift_Del	G	-	p.G33fs
LIHC	TCGA-DD-A39Y-01	MROH8	ENST00000400440.2,ENST00000421643.1,ENST00000441008.2,ENST00000343811.4,ENST00000400441.3	chr20	35766292:35766373:35769564:35769717:35772119:35772244,	35769565	35769717	35769587	35769587	Frame_Shift_Del	T	-	p.N489fs
LIHC	TCGA-DD-A39Y-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640067	36640067	Frame_Shift_Del	C	-	p.V718fs
LIHC	TCGA-DD-A39Y-01	DHX35	ENST00000373325.2,ENST00000484417.1,ENST00000252011.3,ENST00000373323.4	chr20	37643522:37643577:37647446:37647542:37650483:37650578,	37647447	37647542	37647524	37647524	Frame_Shift_Del	A	-	p.K494fs
LIHC	TCGA-DD-A39Y-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000373272.2	chr20	39794089:39794191:39794278:39794466:39794833:39795034,	39794279	39794466	39794394	39794394	Frame_Shift_Del	C	-	p.T576fs
LIHC	TCGA-DD-A39Y-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000373272.2	chr20	39795115:39795235:39795318:39795499:39796491:39796569,	39795319	39795499	39795461	39795461	Frame_Shift_Del	C	-	p.P755fs
LIHC	TCGA-DD-A39Y-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39833317	39833317	Frame_Shift_Del	T	-	p.K80fs
LIHC	TCGA-DD-A39Y-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39833317	39833317	Frame_Shift_Del	T	-	p.K80fs
LIHC	TCGA-DD-A39Y-01	LPIN3	ENST00000373257.3	chr20	39980699:39980860:39981245:39981339:39981437:39981507,	39981246	39981339	39981313	39981313	Frame_Shift_Del	A	-	p.P477fs
LIHC	TCGA-DD-A39Y-01	CHD6	ENST00000373233.3	chr20	40049147:40050719:40052131:40052340:40053817:40054029,	40052132	40052340	40052269	40052269	Frame_Shift_Del	T	-	p.K1474fs
LIHC	TCGA-DD-A39Y-01	CHD6	ENST00000470470.1,ENST00000373233.3,ENST00000309279.7,ENST00000373222.3	chr20	40141484:40141634:40143443:40143591:40161688:40161924,	40143444	40143591	40143533	40143533	Frame_Shift_Del	T	-	p.T206fs
LIHC	TCGA-DD-A39Y-01	CHD6	ENST00000373222.3	chr20	40161794:40162209:40192649:40192790:40246978:40247014,	40192650	40192790	40192676	40192676	Frame_Shift_Del	G	-	p.Q38fs
LIHC	TCGA-DD-A39Y-01	L3MBTL1	ENST00000445228.1	chr20	42158973:42159059:42161412:42161564:42161981:42162058,	42161413	42161564	42161533	42161533	Frame_Shift_Del	T	-	p.F379fs
LIHC	TCGA-DD-A39Y-01	MYBL2	ENST00000396863.4,ENST00000217026.4	chr20	42328396:42328684:42331129:42331543:42333858:42333998,	42331130	42331543	42331165	42331165	Frame_Shift_Del	C	-	p.D329fs
LIHC	TCGA-DD-A39Y-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694616	42694616	Frame_Shift_Del	C	-	p.P392fs
LIHC	TCGA-DD-A39Y-01	HNF4A	ENST00000316673.4,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000316099.4	chr20	43048360:43048516:43052657:43052894:43056974:43057097,	43052658	43052894	43052725	43052725	Frame_Shift_Del	G	-	p.E320fs
LIHC	TCGA-DD-A39Y-01	STK4	ENST00000396731.4,ENST00000372801.1,ENST00000499879.2,ENST00000372806.3	chr20	43623730:43623898:43625809:43625947:43629032:43629161,	43625810	43625947	43625851	43625851	Frame_Shift_Del	A	-	p.R245fs
LIHC	TCGA-DD-A39Y-01	SDC4	ENST00000372733.3,ENST00000537976.1	chr20	43955115:43956055:43959005:43959204:43961662:43961709,	43959006	43959204	43959060	43959060	Frame_Shift_Del	T	-	p.M131fs
LIHC	TCGA-DD-A39Y-01	WFDC3	ENST00000471401.1	chr20	44403038:44403083:44404055:44404241:44420470:44420507,	44404056	44404241	44404208	44404208	Frame_Shift_Del	C	-	p.G176fs
LIHC	TCGA-DD-A39Y-01	WFDC3	ENST00000243938.4	chr20	44417569:44417698:44418532:44418621:44420470:44420507,	44418533	44418621	44418567	44418567	Frame_Shift_Del	C	-	p.G16fs
LIHC	TCGA-DD-A39Y-01	CD40	ENST00000477696.1	chr20	44747011:44747033:44750362:44750537:44750871:44750882,	44750363	44750537	44750490	44750490	Frame_Shift_Del	A	-	p.E28fs
LIHC	TCGA-DD-A39Y-01	CD40	ENST00000372276.3,ENST00000489304.1,ENST00000466205.1	chr20	44747011:44747033:44750458:44750537:44750871:44750882,	44750459	44750537	44750490	44750490	Frame_Shift_Del	A	-	p.E28fs
LIHC	TCGA-DD-A39Y-01	CD40	ENST00000489304.1,ENST00000372285.3	chr20	44751248:44751395:44751764:44751858:44756776:44756847,44751254:44751395:44751764:44751858:44755278:44755340,	44751765	44751858	44751799	44751799	Frame_Shift_Del	C	-	p.C146fs
LIHC	TCGA-DD-A39Y-01	ELMO2	ENST00000290246.6,ENST00000396391.1,ENST00000460474.1,ENST00000497412.1,ENST00000439931.2,ENST00000450812.1,ENST00000372176.1,ENST00000469801.1	chr20	45014764:45014914:45015976:45016076:45017677:45017859,	45015977	45016076	45016027	45016027	Frame_Shift_Del	C	-	p.D71fs
LIHC	TCGA-DD-A39Y-01	ELMO2	ENST00000352077.2	chr20	45014764:45014914:45015976:45016070:45017677:45017859,	45015977	45016070	45016027	45016027	Frame_Shift_Del	C	-	p.D71fs
LIHC	TCGA-DD-A39Y-01	ELMO2	ENST00000290246.6,ENST00000396391.1,ENST00000460474.1,ENST00000497412.1,ENST00000439931.2,ENST00000450812.1,ENST00000372176.1,ENST00000469801.1	chr20	45014764:45014914:45015976:45016076:45017677:45017859,	45015977	45016076	45016051	45016051	Frame_Shift_Del	G	-	p.L63fs
LIHC	TCGA-DD-A39Y-01	ELMO2	ENST00000352077.2	chr20	45014764:45014914:45015976:45016070:45017677:45017859,	45015977	45016070	45016051	45016051	Frame_Shift_Del	G	-	p.L63fs
LIHC	TCGA-DD-A39Y-01	SLC13A3	ENST00000472148.1,ENST00000396360.1	chr20	45212210:45212308:45217798:45217894:45221042:45221085,	45217799	45217894	45217814	45217814	Frame_Shift_Del	T	-	p.N334fs
LIHC	TCGA-DD-A39Y-01	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000497062.2,ENST00000317304.6	chr20	45618639:45618758:45630066:45630112:45633580:45633718,	45630067	45630112	45630082	45630082	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-DD-A39Y-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45855945:45856024:45858471:45858552:45865069:45865260,	45858472	45858552	45858497	45858497	Frame_Shift_Del	T	-	p.N951fs
LIHC	TCGA-DD-A39Y-01	ZMYND8	ENST00000458360.2	chr20	45858471:45858552:45865069:45865260:45867639:45867882,45858471:45858552:45865069:45865260:45874751:45875261,	45865070	45865260	45865153	45865153	Frame_Shift_Del	G	-	p.L905fs
LIHC	TCGA-DD-A39Y-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45874790	45874790	Frame_Shift_Del	T	-	p.N729fs
LIHC	TCGA-DD-A39Y-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4,ENST00000435836.1	chr20	45920539:45920632:45923409:45923523:45927472:45927616,	45923410	45923523	45923424	45923424	Frame_Shift_Del	T	-	p.M165fs
LIHC	TCGA-DD-A39Y-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46262791:46262939:46264065:46264457:46264634:46265506,	46264066	46264457	46264281	46264281	Frame_Shift_Del	C	-	p.T443fs
LIHC	TCGA-DD-A39Y-01	NCOA3	ENST00000371997.3	chr20	46266391:46266527:46267751:46267946:46268320:46268566,46266391:46266527:46267751:46267946:46268365:46268566,	46267752	46267946	46267849	46267849	Frame_Shift_Del	A	-	p.V870fs
LIHC	TCGA-DD-A39Y-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46294600:46294697:46295003:46295232:46300941:46301137,	46295004	46295232	46295131	46295131	Frame_Shift_Del	G	-	p.R560fs
LIHC	TCGA-DD-A39Y-01	PREX1	ENST00000396220.1,ENST00000371941.3	chr20	47342826:47342928:47351082:47351187:47361561:47361684,	47351083	47351187	47351121	47351121	Frame_Shift_Del	C	-	p.E161fs
LIHC	TCGA-DD-A39Y-01	ARFGEF2	ENST00000371917.4	chr20	47569241:47569421:47570092:47570327:47580366:47580435,	47570093	47570327	47570131	47570131	Frame_Shift_Del	A	-	p.S214fs
LIHC	TCGA-DD-A39Y-01	CSE1L	ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47691854:47692057:47693516:47693601:47695097:47695159,	47693517	47693601	47693562	47693562	Frame_Shift_Del	T	-	p.F461fs
LIHC	TCGA-DD-A39Y-01	CSE1L	ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47705783:47705934:47706074:47706283:47707278:47707376,	47706075	47706283	47706158	47706158	Frame_Shift_Del	T	-	p.F686fs
LIHC	TCGA-DD-A39Y-01	CSE1L	ENST00000469700.1,ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47708582:47708664:47710676:47710823:47711268:47711500,	47710677	47710823	47710744	47710744	Frame_Shift_Del	A	-	p.K840fs
LIHC	TCGA-DD-A39Y-01	CSE1L	ENST00000469700.1,ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47708582:47708664:47710676:47710823:47711268:47711500,	47710677	47710823	47710789	47710789	Frame_Shift_Del	C	-	p.P855fs
LIHC	TCGA-DD-A39Y-01	ZNFX1	ENST00000371754.4	chr20	47855479:47855837:47858346:47858460:47868063:47868159,	47858347	47858460	47858380	47858380	Frame_Shift_Del	A	-	p.F1131fs
LIHC	TCGA-DD-A39Y-01	DDX27	ENST00000471144.1,ENST00000371764.4,ENST00000484427.1	chr20	47858619:47858743:47859130:47859218:47860165:47860240,	47859131	47859218	47859197	47859197	Frame_Shift_Del	C	-	p.A759fs
LIHC	TCGA-DD-A39Y-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47887338	47887338	Frame_Shift_Del	G	-	p.P337fs
LIHC	TCGA-DD-A39Y-01	PTGIS	ENST00000478971.1,ENST00000244043.4	chr20	48124520:48124601:48127564:48127716:48129616:48129798,	48127565	48127716	48127617	48127617	Frame_Shift_Del	C	-	p.A436fs
LIHC	TCGA-DD-A39Y-01	SLC9A8	ENST00000541138.1	chr20	48471974:48472118:48481264:48481381:48491241:48491358,	48481265	48481381	48481334	48481334	Frame_Shift_Del	T	-	p.I320fs
LIHC	TCGA-DD-A39Y-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520470	49520470	Frame_Shift_Del	T	-	p.I22fs
LIHC	TCGA-DD-A39Y-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520488	49520488	Frame_Shift_Del	G	-	p.R16fs
LIHC	TCGA-DD-A39Y-01	NFATC2	ENST00000609943.1,ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000396009.3,ENST00000610033.1	chr20	50071084:50071225:50090516:50090689:50091994:50092197,	50090517	50090689	50090527	50090527	Frame_Shift_Del	G	-	p.P566fs
LIHC	TCGA-DD-A39Y-01	ZNF217	ENST00000371471.2,ENST00000302342.3	chr20	52185358:52185803:52188259:52188392:52192265:52192566,	52188260	52188392	52188288	52188288	Frame_Shift_Del	T	-	p.T1048fs
LIHC	TCGA-DD-A39Y-01	CYP24A1	ENST00000216862.3,ENST00000395954.3	chr20	52773707:52773828:52773926:52774124:52774624:52774703,	52773927	52774124	52774022	52774022	Frame_Shift_Del	T	-	p.I447fs
LIHC	TCGA-DD-A39Y-01	PFDN4	ENST00000441080.2	chr20	52824633:52824663:52830889:52830997:52831838:52831979,	52830890	52830997	52830934	52830934	Frame_Shift_Del	A	-	p.I23fs
LIHC	TCGA-DD-A39Y-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208411	55208411	Frame_Shift_Del	C	-	p.P197fs
LIHC	TCGA-DD-A39Y-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208464	55208464	Frame_Shift_Del	G	-	p.V214fs
LIHC	TCGA-DD-A39Y-01	BMP7	ENST00000395863.3,ENST00000460817.1,ENST00000395864.3	chr20	55746094:55746164:55748255:55748366:55749986:55750063,	55748256	55748366	55748295	55748295	Frame_Shift_Del	G	-	p.S369fs
LIHC	TCGA-DD-A39Y-01	BMP7	ENST00000395863.3,ENST00000460817.1,ENST00000395864.3	chr20	55746094:55746164:55748255:55748366:55749986:55750063,	55748256	55748366	55748318	55748318	Frame_Shift_Del	C	-	p.E362fs
LIHC	TCGA-DD-A39Y-01	BMP7	ENST00000450594.2,ENST00000395864.3	chr20	55777530:55777679:55803284:55803477:55840760:55840834,	55803285	55803477	55803397	55803397	Frame_Shift_Del	C	-	p.E167fs
LIHC	TCGA-DD-A39Y-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000411894.1,ENST00000395841.2,ENST00000492498.1,ENST00000429339.1,ENST00000371242.2,ENST00000452119.1	chr20	55929087:55929184:55929767:55929872:55931501:55931568,	55929768	55929872	55929806	55929806	Frame_Shift_Del	T	-	p.G43fs
LIHC	TCGA-DD-A39Y-01	RAE1	ENST00000462438.1,ENST00000395840.2,ENST00000395841.2,ENST00000492498.1,ENST00000371242.2	chr20	55948718:55948794:55949662:55949857:55953068:55953155,	55949663	55949857	55949755	55949755	Frame_Shift_Del	A	-	p.T306fs
LIHC	TCGA-DD-A39Y-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099166	56099166	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-DD-A39Y-01	ZBP1	ENST00000343535.4,ENST00000371173.3,ENST00000340462.4,ENST00000395822.3	chr20	56185204:56185423:56186782:56186986:56188218:56188386,	56186783	56186986	56186797	56186797	Frame_Shift_Del	G	-	p.P264fs
LIHC	TCGA-DD-A39Y-01	ZBP1	ENST00000343535.4,ENST00000538947.1,ENST00000371173.3,ENST00000541799.1	chr20	56189942:56190116:56190567:56190636:56191299:56191524,	56190568	56190636	56190594	56190594	Frame_Shift_Del	G	-	p.P101fs
LIHC	TCGA-DD-A39Y-01	ZBP1	ENST00000343535.4,ENST00000432548.2,ENST00000541799.1	chr20	56190567:56190636:56191299:56191524:56195274:56195534,56190567:56190636:56191299:56191524:56195317:56195450,	56191300	56191524	56191434	56191434	Frame_Shift_Del	T	-	p.K42fs
LIHC	TCGA-DD-A39Y-01	PPP4R1L	ENST00000334187.8,ENST00000422302.1,ENST00000244070.3,ENST00000495058.1,ENST00000493688.1	chr20	56822377:56822562:56823170:56823329:56825942:56826008,	56823171	56823329	56823235	56823235	Frame_Shift_Del	G	-	p.P235fs
LIHC	TCGA-DD-A39Y-01	RAB22A	ENST00000244040.3	chr20	56918773:56918855:56928328:56928400:56928487:56928594,	56928329	56928400	56928359	56928359	Frame_Shift_Del	G	-	p.G77fs
LIHC	TCGA-DD-A39Y-01	CTSZ	ENST00000503833.2,ENST00000488395.1,ENST00000217131.5	chr20	57572657:57572808:57576519:57576699:57581376:57581481,	57576520	57576699	57576603	57576603	Frame_Shift_Del	C	-	p.G135fs
LIHC	TCGA-DD-A39Y-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452585	58452585	Frame_Shift_Del	T	-	p.K1002fs
LIHC	TCGA-DD-A39Y-01	SYCP2	ENST00000425931.1	chr20	58495413:58495542:58496364:58496505:58497444:58497473,	58496365	58496505	58496471	58496471	Frame_Shift_Del	T	-	p.N21fs
LIHC	TCGA-DD-A39Y-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58495413:58495542:58496364:58496508:58497444:58497473,	58496365	58496508	58496471	58496471	Frame_Shift_Del	T	-	p.N21fs
LIHC	TCGA-DD-A39Y-01	TAF4	ENST00000252996.4,ENST00000436129.2	chr20	60574038:60574164:60575179:60575310:60575607:60575777,	60575180	60575310	60575188	60575188	Frame_Shift_Del	A	-	p.S927fs
LIHC	TCGA-DD-A39Y-01	OSBPL2	ENST00000439951.2	chr20	60859101:60859225:60861638:60861767:60864262:60864386,60859101:60859225:60861638:60861767:60866758:60866849,	60861639	60861767	60861691	60861691	Frame_Shift_Del	C	-	p.A350fs
LIHC	TCGA-DD-A39Y-01	ADRM1	ENST00000253003.2	chr20	60881703:60881790:60882426:60882508:60882651:60882884,	60882427	60882508	60882434	60882434	Frame_Shift_Del	G	-	p.L183fs
LIHC	TCGA-DD-A39Y-01	LAMA5	ENST00000252999.3	chr20	60901920:60902022:60902288:60902462:60902584:60902725,	60902289	60902462	60902311	60902311	Frame_Shift_Del	G	-	p.P1698fs
LIHC	TCGA-DD-A39Y-01	LAMA5	ENST00000252999.3	chr20	60902584:60902725:60902921:60903066:60903296:60903501,	60902922	60903066	60903002	60903002	Frame_Shift_Del	G	-	p.R1573fs
LIHC	TCGA-DD-A39Y-01	LAMA5	ENST00000252999.3	chr20	60908619:60908762:60908956:60909095:60909241:60909398,	60908957	60909095	60909020	60909020	Frame_Shift_Del	C	-	p.A939fs
LIHC	TCGA-DD-A39Y-01	LAMA5	ENST00000252999.3	chr20	60908619:60908762:60908956:60909095:60909241:60909398,	60908957	60909095	60909052	60909052	Frame_Shift_Del	A	-	p.F928fs
LIHC	TCGA-DD-A39Y-01	LAMA5	ENST00000252999.3	chr20	60912645:60912783:60912859:60912994:60913071:60913206,	60912860	60912994	60912973	60912973	Frame_Shift_Del	C	-	p.G638fs
LIHC	TCGA-DD-A39Y-01	SLCO4A1	ENST00000370507.1,ENST00000217159.1,ENST00000497209.1	chr20	61287710:61288602:61290028:61290119:61291763:61291885,	61290029	61290119	61290054	61290054	Frame_Shift_Del	G	-	p.L274fs
LIHC	TCGA-DD-A39Y-01	COL9A3	ENST00000343916.3,ENST00000452372.1,ENST00000477612.1,ENST00000489045.1	chr20	61453942:61453984:61455796:61455853:61456319:61456373,	61455797	61455853	61455821	61455821	Frame_Shift_Del	C	-	p.P183fs
LIHC	TCGA-DD-A39Y-01	COL9A3	ENST00000343916.3,ENST00000452372.1,ENST00000489045.1	chr20	61455796:61455853:61456319:61456373:61457168:61457222,	61456320	61456373	61456346	61456346	Frame_Shift_Del	G	-	p.Q201fs
LIHC	TCGA-DD-A39Y-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61834194	61834194	Frame_Shift_Del	G	-	p.P366fs
LIHC	TCGA-DD-A39Y-01	COL20A1	ENST00000435874.1,ENST00000358894.6,ENST00000326996.6,ENST00000422202.1	chr20	61942982:61943100:61943267:61943407:61943771:61943901,	61943268	61943407	61943290	61943290	Frame_Shift_Del	C	-	p.H569fs
LIHC	TCGA-DD-A39Y-01	PTK6	ENST00000542869.1,ENST00000217185.2	chr20	62162098:62162280:62163878:62164040:62164903:62165057,	62163879	62164040	62163934	62163934	Frame_Shift_Del	G	-	p.P259fs
LIHC	TCGA-DD-A39Y-01	ARFRP1	ENST00000609243.1	chr20	62331992:62332054:62333181:62333250:62333487:62333569,	62333182	62333250	62333215	62333215	Frame_Shift_Del	G	-	p.P128fs
LIHC	TCGA-DD-A39Y-01	ARFRP1	ENST00000440854.1,ENST00000359715.5,ENST00000609142.1,ENST00000607873.1,ENST00000324228.2	chr20	62331992:62332054:62333181:62333252:62333487:62333569,	62333182	62333252	62333215	62333215	Frame_Shift_Del	G	-	p.P128fs
LIHC	TCGA-DD-A39Y-01	SLC2A4RG	ENST00000474248.1,ENST00000266077.2	chr20	62372756:62372832:62373221:62373409:62373482:62373519,	62373222	62373409	62373347	62373347	Frame_Shift_Del	C	-	p.P174fs
LIHC	TCGA-DD-A39Y-01	OPRL1	ENST00000355631.4	chr20	62711548:62711705:62724040:62724306:62729154:62729510,	62724041	62724306	62724102	62724102	Frame_Shift_Del	G	-	p.W10fs
LIHC	TCGA-DD-A39Y-01	OPRL1	ENST00000355631.4	chr20	62711548:62711705:62724040:62724306:62729154:62729510,	62724041	62724306	62724224	62724224	Frame_Shift_Del	A	-	p.K51fs
LIHC	TCGA-DD-A39Y-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15884764:15884894:15889212:15889362:15893470:15893542,	15889213	15889362	15889252	15889252	Frame_Shift_Del	T	-	p.K148fs
LIHC	TCGA-DD-A39Y-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15884764:15884894:15889212:15889362:15893470:15893542,	15889213	15889362	15889284	15889284	Frame_Shift_Del	T	-	p.M138fs
LIHC	TCGA-DD-A39Y-01	CXADR	ENST00000400165.1	chr21	18919344:18919511:18924066:18924271:18931293:18931449,18919344:18919511:18924066:18924271:18937745:18937805,	18924067	18924271	18924223	18924223	Frame_Shift_Del	A	-	p.K124fs
LIHC	TCGA-DD-A39Y-01	CXADR	ENST00000400165.1	chr21	18919344:18919511:18924066:18924271:18931293:18931449,18919344:18919511:18924066:18924271:18937745:18937805,	18924067	18924271	18924254	18924254	Frame_Shift_Del	T	-	p.I133fs
LIHC	TCGA-DD-A39Y-01	CXADR	ENST00000306618.10	chr21	18931293:18931449:18933655:18933794:18937745:18937805,	18933656	18933794	18933699	18933699	Frame_Shift_Del	T	-	p.T246fs
LIHC	TCGA-DD-A39Y-01	MRPL39	ENST00000419219.1,ENST00000352957.4,ENST00000307301.7	chr21	26973679:26973779:26976107:26976247:26978760:26978967,	26976108	26976247	26976193	26976193	Frame_Shift_Del	G	-	p.P112fs
LIHC	TCGA-DD-A39Y-01	GABPA	ENST00000400075.3	chr21	27107699:27107889:27113883:27113986:27117520:27117665,	27113884	27113986	27113916	27113916	Frame_Shift_Del	A	-	p.K3fs
LIHC	TCGA-DD-A39Y-01	GABPA	ENST00000400075.3,ENST00000487266.1,ENST00000354828.3	chr21	27117520:27117665:27121346:27121431:27124299:27124545,	27121347	27121431	27121353	27121353	Frame_Shift_Del	C	-	p.P77fs
LIHC	TCGA-DD-A39Y-01	GABPA	ENST00000400075.3,ENST00000487266.1,ENST00000354828.3	chr21	27117520:27117665:27121346:27121431:27124299:27124545,	27121347	27121431	27121382	27121382	Frame_Shift_Del	A	-	p.V86fs
LIHC	TCGA-DD-A39Y-01	APP	ENST00000448850.1,ENST00000440126.3,ENST00000357903.3	chr21	27369674:27369731:27372329:27372497:27394155:27394243,27354656:27354790:27372329:27372497:27394155:27394243,	27372330	27372497	27372361	27372361	Frame_Shift_Del	T	-	p.E335fs
LIHC	TCGA-DD-A39Y-01	LTN1	ENST00000389194.2,ENST00000361371.5	chr21	30315583:30315658:30315988:30316226:30316704:30316918,	30315989	30316226	30316046	30316046	Frame_Shift_Del	G	-	p.P1388fs
LIHC	TCGA-DD-A39Y-01	LTN1	ENST00000389194.2,ENST00000361371.5	chr21	30329083:30329270:30329653:30329798:30330707:30330861,	30329654	30329798	30329700	30329700	Frame_Shift_Del	G	-	p.P949fs
LIHC	TCGA-DD-A39Y-01	LTN1	ENST00000389195.2	chr21	30333638:30333855:30336898:30337088:30338186:30338228,	30336899	30337088	30337040	30337040	Frame_Shift_Del	T	-	p.I784fs
LIHC	TCGA-DD-A39Y-01	LTN1	ENST00000389195.2,ENST00000389194.2,ENST00000483326.1,ENST00000361371.5	chr21	30342873:30343064:30343592:30343766:30353440:30353621,	30343593	30343766	30343636	30343636	Frame_Shift_Del	G	-	p.P314fs
LIHC	TCGA-DD-A39Y-01	MAP3K7CL	ENST00000339024.4,ENST00000399925.1,ENST00000451489.1,ENST00000399934.1,ENST00000399928.1,ENST00000286791.5,ENST00000399926.1,ENST00000399935.2	chr21	30505626:30505735:30521509:30521571:30532261:30532377,	30521510	30521571	30521518	30521518	Frame_Shift_Del	C	-	p.P28fs
LIHC	TCGA-DD-A39Y-01	GRIK1	ENST00000472429.1,ENST00000399909.1,ENST00000399914.1,ENST00000389125.3,ENST00000399907.1,ENST00000389124.2,ENST00000309434.7,ENST00000399913.1,ENST00000535441.1	chr21	31062047:31062305:31066214:31066382:31311700:31311818,	31066215	31066382	31066240	31066240	Frame_Shift_Del	A	-	p.F87fs
LIHC	TCGA-DD-A39Y-01	TIAM1	ENST00000541036.1,ENST00000286827.3	chr21	32624057:32624505:32638325:32639299:32649047:32649083,	32638326	32639299	32638533	32638533	Frame_Shift_Del	T	-	p.K252fs
LIHC	TCGA-DD-A39Y-01	URB1	ENST00000382751.3	chr21	33716878:33717065:33717682:33717884:33719264:33720120,	33717683	33717884	33717715	33717715	Frame_Shift_Del	G	-	p.P1346fs
LIHC	TCGA-DD-A39Y-01	SYNJ1	ENST00000357345.3,ENST00000382491.3,ENST00000382499.2,ENST00000433931.2,ENST00000322229.7	chr21	34022493:34022656:34025597:34025676:34028996:34029212,	34025598	34025676	34025644	34025644	Frame_Shift_Del	A	-	p.L982fs
LIHC	TCGA-DD-A39Y-01	TMEM50B	ENST00000420455.1,ENST00000542230.2	chr21	34828033:34828091:34832719:34832812:34837648:34837716,	34832720	34832812	34832794	34832794	Frame_Shift_Del	A	-	p.F100fs
LIHC	TCGA-DD-A39Y-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34925266	34925266	Frame_Shift_Del	G	-	p.E1243fs
LIHC	TCGA-DD-A39Y-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34926212	34926212	Frame_Shift_Del	G	-	p.G1559fs
LIHC	TCGA-DD-A39Y-01	ITSN1	ENST00000399367.3,ENST00000381291.4,ENST00000487427.1,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35191544:35191627:35195790:35195957:35199121:35199167,	35195791	35195957	35195864	35195864	Frame_Shift_Del	G	-	p.L1030fs
LIHC	TCGA-DD-A39Y-01	RUNX1	ENST00000399240.1	chr21	36164082:36164907:36171597:36171759:36206706:36206898,36164082:36164907:36171597:36171759:36231770:36231875,	36171598	36171759	36171699	36171699	Frame_Shift_Del	C	-	p.G262fs
LIHC	TCGA-DD-A39Y-01	RUNX1	ENST00000455571.1	chr21	36252902:36253010:36259139:36259393:36265221:36265260,36252902:36253010:36259139:36259393:36421138:36421255,	36259140	36259393	36259165	36259165	Frame_Shift_Del	T	-	p.N82fs
LIHC	TCGA-DD-A39Y-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37732481:37732556:37734480:37734526:37736390:37736557,	37734481	37734526	37734489	37734489	Frame_Shift_Del	A	-	p.E472fs
LIHC	TCGA-DD-A39Y-01	SIM2	ENST00000481185.1,ENST00000290399.6,ENST00000430056.3	chr21	38071990:38072221:38081467:38081550:38084832:38084922,	38081468	38081550	38081483	38081483	Frame_Shift_Del	G	-	p.W64fs
LIHC	TCGA-DD-A39Y-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38269159:38269431:38302550:38302733:38308748:38309692,	38302551	38302733	38302580	38302580	Frame_Shift_Del	T	-	p.T384fs
LIHC	TCGA-DD-A39Y-01	PIGP	ENST00000329667.3	chr21	38437673:38438012:38439561:38439680:38441851:38441924,38437673:38438012:38439561:38439680:38444733:38444837,	38439562	38439680	38439611	38439611	Frame_Shift_Del	C	-	p.G99fs
LIHC	TCGA-DD-A39Y-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000492275.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000463216.1,ENST00000494243.1,ENST00000355666.1,ENST00000476784.1,ENST00000481605.1,ENST00000399017.2	chr21	38498379:38498443:38501302:38501363:38504981:38505066,	38501303	38501363	38501330	38501330	Frame_Shift_Del	A	-	p.Q442fs
LIHC	TCGA-DD-A39Y-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38538333	38538333	Frame_Shift_Del	G	-	p.G1273fs
LIHC	TCGA-DD-A39Y-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38538400	38538400	Frame_Shift_Del	C	-	p.S1295fs
LIHC	TCGA-DD-A39Y-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555091	38555091	Frame_Shift_Del	T	-	p.L1545fs
LIHC	TCGA-DD-A39Y-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555184	38555184	Frame_Shift_Del	A	-	p.K1576fs
LIHC	TCGA-DD-A39Y-01	ETS2	ENST00000360214.3,ENST00000360938.3	chr21	40177894:40178044:40181958:40182030:40184926:40185038,	40181959	40182030	40181996	40181996	Frame_Shift_Del	C	-	p.A13fs
LIHC	TCGA-DD-A39Y-01	ETS2	ENST00000432278.1,ENST00000360214.3,ENST00000360938.3,ENST00000456966.1	chr21	40181958:40182030:40184926:40185038:40186196:40186316,	40184927	40185038	40184970	40184970	Frame_Shift_Del	T	-	p.V39fs
LIHC	TCGA-DD-A39Y-01	PSMG1	ENST00000380900.2	chr21	40549360:40549497:40550374:40550573:40552210:40552362,	40550375	40550573	40550450	40550450	Frame_Shift_Del	T	-	p.T194fs
LIHC	TCGA-DD-A39Y-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40781904:40782022:40782189:40782293:40783643:40783728,	40782190	40782293	40782254	40782254	Frame_Shift_Del	A	-	p.L367fs
LIHC	TCGA-DD-A39Y-01	BACE2	ENST00000328735.6,ENST00000347667.5	chr21	42539727:42540502:42598192:42598281:42609439:42609656,	42598193	42598281	42598242	42598242	Frame_Shift_Del	C	-	p.T121fs
LIHC	TCGA-DD-A39Y-01	MX2	ENST00000330714.3,ENST00000482953.1,ENST00000496774.1	chr21	42770911:42770946:42771122:42771264:42773896:42774055,	42771123	42771264	42771221	42771221	Frame_Shift_Del	T	-	p.D457fs
LIHC	TCGA-DD-A39Y-01	TMPRSS2	ENST00000398585.3,ENST00000454499.1,ENST00000458356.1,ENST00000424093.1,ENST00000332149.5	chr21	42861433:42861520:42866282:42866505:42870045:42870116,	42866283	42866505	42866377	42866377	Frame_Shift_Del	G	-	p.P85fs
LIHC	TCGA-DD-A39Y-01	C2CD2	ENST00000467074.2,ENST00000482084.1,ENST00000482186.1,ENST00000380486.3,ENST00000329623.7	chr21	43325832:43325946:43327100:43327275:43327768:43327893,	43327101	43327275	43327183	43327183	Frame_Shift_Del	G	-	p.P412fs
LIHC	TCGA-DD-A39Y-01	C2CD2	ENST00000467074.2,ENST00000482084.1,ENST00000482186.1,ENST00000380486.3,ENST00000329623.7	chr21	43325832:43325946:43327100:43327275:43327768:43327893,	43327101	43327275	43327243	43327243	Frame_Shift_Del	G	-	p.S392fs
LIHC	TCGA-DD-A39Y-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413528	43413528	Frame_Shift_Del	A	-	p.L226fs
LIHC	TCGA-DD-A39Y-01	ABCG1	ENST00000398457.2,ENST00000347800.2,ENST00000398449.3,ENST00000462050.1,ENST00000361802.2,ENST00000398437.1,ENST00000496783.1,ENST00000472587.1,ENST00000340588.4,ENST00000343687.3	chr21	43710159:43710328:43711201:43711302:43711607:43711766,	43711202	43711302	43711297	43711297	Frame_Shift_Del	T	-	p.F655fs
LIHC	TCGA-DD-A39Y-01	RSPH1	ENST00000398352.3	chr21	43906480:43906571:43912867:43912973:43916242:43916296,	43912868	43912973	43912954	43912954	Frame_Shift_Del	T	-	p.N63fs
LIHC	TCGA-DD-A39Y-01	PDE9A	ENST00000398225.3,ENST00000398232.3,ENST00000328862.6,ENST00000291539.6	chr21	44119077:44119121:44151879:44152059:44153465:44153536,44119077:44119121:44151879:44152059:44152179:44152234,	44151880	44152059	44151966	44151966	Frame_Shift_Del	C	-	p.P117fs
LIHC	TCGA-DD-A39Y-01	NDUFV3	ENST00000460259.1,ENST00000354250.2	chr21	44317048:44317157:44323291:44324386:44328973:44329215,	44323292	44324386	44323476	44323476	Frame_Shift_Del	A	-	p.R118fs
LIHC	TCGA-DD-A39Y-01	NDUFV3	ENST00000460259.1,ENST00000354250.2	chr21	44317048:44317157:44323291:44324386:44328973:44329215,	44323292	44324386	44324300	44324300	Frame_Shift_Del	A	-	p.E393fs
LIHC	TCGA-DD-A39Y-01	CBS	ENST00000398158.1,ENST00000398168.1,ENST00000544202.1,ENST00000352178.5,ENST00000461686.1,ENST00000398165.3,ENST00000359624.3	chr21	44485496:44485631:44485725:44485805:44486352:44486487,	44485726	44485805	44485772	44485772	Frame_Shift_Del	C	-	p.G162fs
LIHC	TCGA-DD-A39Y-01	HSF2BP	ENST00000542962.1,ENST00000291560.2	chr21	45033731:45033828:45050202:45050335:45053152:45053302,	45050203	45050335	45050316	45050316	Frame_Shift_Del	A	-	p.F154fs
LIHC	TCGA-DD-A39Y-01	TRAPPC10	ENST00000459741.1,ENST00000291574.4,ENST00000422875.1,ENST00000468864.1	chr21	45518237:45518415:45522658:45522853:45523173:45524614,	45522659	45522853	45522816	45522816	Frame_Shift_Del	C	-	p.L1168fs
LIHC	TCGA-DD-A39Y-01	PWP2	ENST00000486126.1,ENST00000291576.7,ENST00000456705.1	chr21	45534505:45534649:45535144:45535280:45535571:45535625,	45535145	45535280	45535226	45535226	Frame_Shift_Del	G	-	p.L184fs
LIHC	TCGA-DD-A39Y-01	ICOSLG	ENST00000344330.4,ENST00000407780.3,ENST00000400379.3	chr21	45655154:45655445:45656749:45657100:45658330:45658371,	45656750	45657100	45656975	45656975	Frame_Shift_Del	T	-	p.T61fs
LIHC	TCGA-DD-A39Y-01	DNMT3L	ENST00000418993.1,ENST00000431166.1,ENST00000270172.3	chr21	45670692:45670832:45671505:45671581:45674499:45674588,	45671506	45671581	45671533	45671533	Frame_Shift_Del	G	-	p.L248fs
LIHC	TCGA-DD-A39Y-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309220	46309220	Frame_Shift_Del	G	-	p.P616fs
LIHC	TCGA-DD-A39Y-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309314	46309314	Frame_Shift_Del	G	-	p.P585fs
LIHC	TCGA-DD-A39Y-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309403	46309403	Frame_Shift_Del	C	-	p.G555fs
LIHC	TCGA-DD-A39Y-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47536683:47536728:47537313:47537367:47537787:47537850,	47537314	47537367	47537349	47537349	Frame_Shift_Del	G	-	p.K345fs
LIHC	TCGA-DD-A39Y-01	MCM3AP	ENST00000397708.1,ENST00000486937.1,ENST00000291688.1	chr21	47685234:47685437:47685838:47686080:47686895:47687056,	47685839	47686080	47685855	47685855	Frame_Shift_Del	G	-	p.P1005fs
LIHC	TCGA-DD-A39Y-01	DIP2A	ENST00000400274.1,ENST00000427143.2,ENST00000417564.2,ENST00000318711.7	chr21	47969683:47969798:47970455:47970657:47971546:47971656,	47970456	47970657	47970496	47970496	Frame_Shift_Del	C	-	p.A894fs
LIHC	TCGA-DD-A39Y-01	PRMT2	ENST00000458387.2	chr21	48081711:48081848:48083294:48083466:48084206:48084857,48069609:48069651:48083294:48083466:48084206:48084857,	48083295	48083466	48083429	48083429	Frame_Shift_Del	G	-	p.W411fs
LIHC	TCGA-DD-A39Y-01	BCL2L13	ENST00000538149.1	chr22	18165979:18166087:18185008:18185152:18209442:18210300,18171839:18171908:18185008:18185152:18209442:18209734,18178906:18178976:18185008:18185152:18209442:18209734,18138477:18138598:18185008:18185152:18209442:18210300,	18185009	18185152	18185043	18185043	Frame_Shift_Del	T	-	p.L165fs
LIHC	TCGA-DD-A39Y-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300684	18300684	Frame_Shift_Del	C	-	p.G1581fs
LIHC	TCGA-DD-A39Y-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301834	18301834	Frame_Shift_Del	A	-	p.F1198fs
LIHC	TCGA-DD-A39Y-01	MICAL3	ENST00000429452.1,ENST00000585038.1	chr22	18362111:18362168:18363970:18364069:18368643:18368817,	18363971	18364069	18364031	18364031	Frame_Shift_Del	T	-	p.K760fs
LIHC	TCGA-DD-A39Y-01	MICAL3	ENST00000429452.1,ENST00000444520.1,ENST00000400561.2,ENST00000383094.3,ENST00000585038.1,ENST00000414725.2,ENST00000441493.2,ENST00000461307.1,ENST00000207726.7,ENST00000495076.1	chr22	18371799:18371996:18374250:18374398:18376573:18376670,	18374251	18374398	18374376	18374376	Frame_Shift_Del	T	-	p.K523fs
LIHC	TCGA-DD-A39Y-01	SLC25A1	ENST00000470922.1	chr22	19165454:19165554:19165645:19165753:19166092:19166148,	19165646	19165753	19165741	19165741	Frame_Shift_Del	C	-	p.G37fs
LIHC	TCGA-DD-A39Y-01	CLTCL1	ENST00000263200.10,ENST00000505027.2,ENST00000413132.2,ENST00000427926.1,ENST00000353891.5	chr22	19223218:19223392:19226797:19226911:19230297:19230459,	19226798	19226911	19226837	19226837	Frame_Shift_Del	A	-	p.F252fs
LIHC	TCGA-DD-A39Y-01	TANGO2	ENST00000450019.1,ENST00000484373.1,ENST00000327374.4,ENST00000471707.1,ENST00000430807.1,ENST00000485715.2,ENST00000444651.1,ENST00000462579.1,ENST00000401886.1,ENST00000432883.1,ENST00000398042.2,ENST00000434168.1,ENST00000450664.1,ENST00000432198.1,ENST00000447208.2,ENST00000411907.1,ENST00000420290.2	chr22	20024282:20024377:20030877:20030966:20039987:20040107,	20030878	20030966	20030940	20030940	Frame_Shift_Del	G	-	p.W40fs
LIHC	TCGA-DD-A39Y-01	TRMT2A	ENST00000252136.7,ENST00000492988.1,ENST00000404751.3,ENST00000494820.1,ENST00000403707.3	chr22	20100640:20100757:20100954:20101030:20101208:20101321,	20100955	20101030	20100964	20100964	Frame_Shift_Del	G	-	p.Q475fs
LIHC	TCGA-DD-A39Y-01	TRMT2A	ENST00000439169.2,ENST00000487668.1	chr22	20100640:20100757:20100954:20101084:20101208:20101321,	20100955	20101084	20100964	20100964	Frame_Shift_Del	G	-	p.Q475fs
LIHC	TCGA-DD-A39Y-01	USP41	ENST00000454608.2,ENST00000486536.2,ENST00000292729.8	chr22	20717914:20717964:20718475:20718607:20720856:20720962,	20718476	20718607	20718599	20718599	Frame_Shift_Del	C	-	p.G300fs
LIHC	TCGA-DD-A39Y-01	MAPK1	ENST00000398822.3,ENST00000544786.1,ENST00000215832.6	chr22	22142982:22143097:22153300:22153417:22160138:22160328,	22153301	22153417	22153318	22153318	Frame_Shift_Del	T	-	p.I198fs
LIHC	TCGA-DD-A39Y-01	BCR	ENST00000359540.3,ENST00000305877.8,ENST00000436990.2	chr22	23656154:23656260:23656738:23656901:23657619:23657711,	23656739	23656901	23656799	23656799	Frame_Shift_Del	C	-	p.G1208fs
LIHC	TCGA-DD-A39Y-01	CHCHD10	ENST00000484558.2	chr22	24108314:24108462:24109560:24109780:24110020:24110063,	24109561	24109780	24109594	24109594	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A39Y-01	CHCHD10	ENST00000517886.1	chr22	24108314:24108462:24109560:24109727:24110020:24110063,	24109561	24109727	24109594	24109594	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A39Y-01	GSTT2	ENST00000402588.3	chr22	24324888:24324969:24325061:24325193:24325587:24325797,	24325062	24325193	24325095	24325095	Frame_Shift_Del	A	-	p.K129fs
LIHC	TCGA-DD-A39Y-01	GSTT2	ENST00000215780.5	chr22	24324888:24324969:24325061:24325235:24325587:24325797,	24325062	24325235	24325095	24325095	Frame_Shift_Del	A	-	p.K129fs
LIHC	TCGA-DD-A39Y-01	SNRPD3	ENST00000404603.1,ENST00000215829.3	chr22	24953642:24953768:24963951:24964144:24967883:24967985,	24963952	24964144	24964119	24964119	Frame_Shift_Del	A	-	p.G98fs
LIHC	TCGA-DD-A39Y-01	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000411842.2,ENST00000404234.3	chr22	26743754:26743879:26747017:26747209:26771540:26771655,26743754:26743879:26747017:26747209:26761337:26761532,	26747018	26747209	26747034	26747034	Frame_Shift_Del	C	-	p.D808fs
LIHC	TCGA-DD-A39Y-01	HPS4	ENST00000466781.1,ENST00000439453.1,ENST00000398145.2,ENST00000336873.5,ENST00000422379.2	chr22	26872958:26873102:26875230:26875321:26877687:26878206,	26875231	26875321	26875248	26875248	Frame_Shift_Del	A	-	p.Y39fs
LIHC	TCGA-DD-A39Y-01	TTC28	ENST00000397906.2	chr22	28501266:28501790:28503049:28504391:28559079:28559587,	28503050	28504391	28504044	28504044	Frame_Shift_Del	G	-	p.L597fs
LIHC	TCGA-DD-A39Y-01	CHEK2	ENST00000382580.2,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000404276.1	chr22	29091114:29091230:29091697:29091861:29095825:29095925,29091114:29091230:29091697:29091861:29092888:29092975,	29091698	29091861	29091703	29091703	Frame_Shift_Del	A	-	p.F197fs
LIHC	TCGA-DD-A39Y-01	CHEK2	ENST00000433728.1,ENST00000382566.1	chr22	29095825:29095925:29105993:29106047:29107896:29107919,	29105994	29106047	29106004	29106004	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A39Y-01	KREMEN1	ENST00000407188.1,ENST00000400335.4,ENST00000327813.5,ENST00000400338.2	chr22	29494849:29494941:29517344:29517469:29521250:29521404,	29517345	29517469	29517445	29517445	Frame_Shift_Del	T	-	p.S151fs
LIHC	TCGA-DD-A39Y-01	KREMEN1	ENST00000407188.1,ENST00000400335.4,ENST00000327813.5,ENST00000400338.2	chr22	29494849:29494941:29517344:29517469:29521250:29521404,	29517345	29517469	29517462	29517462	Frame_Shift_Del	G	-	p.R157fs
LIHC	TCGA-DD-A39Y-01	EMID1	ENST00000404755.3	chr22	29629367:29629457:29629602:29629655:29630125:29630188,29629367:29629457:29629602:29629655:29630293:29630338,	29629603	29629655	29629611	29629611	Frame_Shift_Del	G	-	p.G308fs
LIHC	TCGA-DD-A39Y-01	EWSR1	ENST00000332035.6,ENST00000455726.1	chr22	29674119:29674205:29682911:29683123:29684594:29684668,	29682912	29683123	29683054	29683054	Frame_Shift_Del	C	-	p.P242fs
LIHC	TCGA-DD-A39Y-01	EWSR1	ENST00000332035.6,ENST00000455726.1	chr22	29674119:29674205:29682911:29683123:29684594:29684668,	29682912	29683123	29683114	29683114	Frame_Shift_Del	G	-	p.G262fs
LIHC	TCGA-DD-A39Y-01	GAS2L1	ENST00000471961.1,ENST00000406549.3,ENST00000407647.2,ENST00000360113.2,ENST00000407854.1,ENST00000341313.6,ENST00000403764.1	chr22	29704076:29704728:29706428:29706536:29706627:29706724,	29706429	29706536	29706464	29706464	Frame_Shift_Del	C	-	p.D223fs
LIHC	TCGA-DD-A39Y-01	AP1B1	ENST00000415447.1,ENST00000317368.7,ENST00000356015.2,ENST00000432560.2,ENST00000405198.1,ENST00000357586.2,ENST00000402502.1	chr22	29736644:29736846:29737489:29737749:29738273:29738372,	29737490	29737749	29737543	29737543	Frame_Shift_Del	A	-	p.F581fs
LIHC	TCGA-DD-A39Y-01	AP1B1	ENST00000415447.1,ENST00000317368.7,ENST00000356015.2,ENST00000432560.2,ENST00000405198.1,ENST00000357586.2,ENST00000421126.1,ENST00000402502.1	chr22	29750638:29750860:29752414:29752605:29754714:29754960,	29752415	29752605	29752529	29752529	Frame_Shift_Del	G	-	p.P201fs
LIHC	TCGA-DD-A39Y-01	CCDC157	ENST00000338306.3,ENST00000405659.1	chr22	30765420:30765592:30766314:30766939:30767638:30767716,	30766315	30766939	30766636	30766636	Frame_Shift_Del	C	-	p.P248fs
LIHC	TCGA-DD-A39Y-01	CCDC157	ENST00000475975.1	chr22	30769911:30770080:30771474:30771652:30772247:30772336,	30771475	30771652	30771617	30771617	Frame_Shift_Del	A	-	p.K608fs
LIHC	TCGA-DD-A39Y-01	CCDC157	ENST00000338306.3,ENST00000405659.1	chr22	30769911:30770080:30771467:30771652:30772247:30772336,	30771468	30771652	30771617	30771617	Frame_Shift_Del	A	-	p.K608fs
LIHC	TCGA-DD-A39Y-01	SEC14L6	ENST00000437871.1,ENST00000402034.2	chr22	30921597:30921737:30921812:30921919:30925073:30925150,	30921813	30921919	30921894	30921894	Frame_Shift_Del	T	-	p.K230fs
LIHC	TCGA-DD-A39Y-01	PES1	ENST00000406208.3,ENST00000354694.7,ENST00000402281.1,ENST00000433575.1,ENST00000466614.1,ENST00000402284.3,ENST00000405677.1,ENST00000335214.6	chr22	30983272:30983382:30984007:30984161:30985177:30985257,	30984008	30984161	30984130	30984130	Frame_Shift_Del	G	-	p.H46fs
LIHC	TCGA-DD-A39Y-01	DUSP18	ENST00000407308.1	chr22	31048082:31048284:31059390:31060067:31063448:31063796,31048082:31048284:31059390:31060067:31062793:31062925,	31059391	31060067	31059698	31059698	Frame_Shift_Del	C	-	p.G61fs
LIHC	TCGA-DD-A39Y-01	OSBP2	ENST00000453621.1,ENST00000535268.1,ENST00000452656.1,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31285166:31285221:31285476:31285623:31286714:31286952,	31285477	31285623	31285538	31285538	Frame_Shift_Del	T	-	p.I513fs
LIHC	TCGA-DD-A39Y-01	MORC2	ENST00000397641.3,ENST00000215862.4	chr22	31328531:31328756:31328875:31329017:31329452:31329507,	31328876	31329017	31328942	31328942	Frame_Shift_Del	T	-	p.K757fs
LIHC	TCGA-DD-A39Y-01	RNF185	ENST00000518626.1,ENST00000326132.6,ENST00000426256.2	chr22	31592921:31592976:31597483:31597601:31600474:31600557,	31597484	31597601	31597538	31597538	Frame_Shift_Del	G	-	p.G140fs
LIHC	TCGA-DD-A39Y-01	DRG1	ENST00000433341.1,ENST00000416465.1	chr22	31806997:31807067:31816241:31816411:31819265:31819305,31806997:31807067:31816241:31816411:31817293:31817385,	31816242	31816411	31816245	31816245	Frame_Shift_Del	C	-	p.A139fs
LIHC	TCGA-DD-A39Y-01	SFI1	ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000484806.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000382162.3	chr22	31974367:31974438:31976257:31976350:31979860:31979863,	31976258	31976350	31976278	31976278	Frame_Shift_Del	A	-	p.L310fs
LIHC	TCGA-DD-A39Y-01	DEPDC5	ENST00000266091.3,ENST00000400242.3,ENST00000535622.1,ENST00000382105.2,ENST00000456178.1,ENST00000382111.2,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32160960:32161046:32162570:32162654:32164799:32164849,	32162571	32162654	32162646	32162646	Frame_Shift_Del	A	-	p.K119fs
LIHC	TCGA-DD-A39Y-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400248.2	chr22	32289567:32289737:32293467:32293639:32297727:32297788,	32293468	32293639	32293582	32293582	Frame_Shift_Del	T	-	p.F1440fs
LIHC	TCGA-DD-A39Y-01	RFPL2	ENST00000400237.1,ENST00000400236.3	chr22	32588888:32589179:32590331:32590477:32598319:32598537,	32590332	32590477	32590413	32590413	Frame_Shift_Del	T	-	p.R62fs
LIHC	TCGA-DD-A39Y-01	RFPL2	ENST00000400237.1,ENST00000400236.3	chr22	32588888:32589179:32590331:32590477:32598319:32598537,	32590332	32590477	32590442	32590442	Frame_Shift_Del	G	-	p.P52fs
LIHC	TCGA-DD-A39Y-01	FBXO7	ENST00000397426.1	chr22	32871243:32871385:32874967:32875262:32879883:32879970,	32874968	32875262	32875051	32875051	Frame_Shift_Del	T	-	p.V69fs
LIHC	TCGA-DD-A39Y-01	FBXO7	ENST00000397426.1	chr22	32871243:32871385:32874967:32875262:32879883:32879970,	32874968	32875262	32875056	32875056	Frame_Shift_Del	G	-	p.G71fs
LIHC	TCGA-DD-A39Y-01	RBFOX2	ENST00000438146.2,ENST00000408983.2	chr22	36177646:36177790:36205826:36206051:36334894:36334945,36177646:36177793:36205826:36206051:36334894:36334945,	36205827	36206051	36205871	36205871	Frame_Shift_Del	C	-	p.E70fs
LIHC	TCGA-DD-A39Y-01	APOL1	ENST00000427990.1,ENST00000397278.3,ENST00000319136.4,ENST00000422706.1,ENST00000426053.1,ENST00000397279.4	chr22	36649180:36649265:36657641:36657768:36661196:36661361,36655714:36655902:36657641:36657768:36661196:36661361,36653364:36653453:36657641:36657768:36661196:36661327,	36657642	36657768	36657684	36657684	Frame_Shift_Del	A	-	p.E93fs
LIHC	TCGA-DD-A39Y-01	MYH9	ENST00000216181.5	chr22	36702459:36702653:36705326:36705441:36708093:36708267,	36705327	36705441	36705430	36705430	Frame_Shift_Del	T	-	p.K580fs
LIHC	TCGA-DD-A39Y-01	FOXRED2	ENST00000216187.6,ENST00000366463.3,ENST00000397223.4,ENST00000397224.4	chr22	36889679:36889850:36892013:36892255:36894037:36894203,	36892014	36892255	36892180	36892180	Frame_Shift_Del	C	-	p.R486fs
LIHC	TCGA-DD-A39Y-01	KCTD17	ENST00000403888.3	chr22	37456862:37456962:37457143:37457215:37457578:37457604,	37457144	37457215	37457161	37457161	Frame_Shift_Del	C	-	p.P251fs
LIHC	TCGA-DD-A39Y-01	MFNG	ENST00000356998.3,ENST00000416983.3	chr22	37868480:37868566:37870549:37870715:37872933:37873019,	37870550	37870715	37870632	37870632	Frame_Shift_Del	C	-	p.G245fs
LIHC	TCGA-DD-A39Y-01	SH3BP1	ENST00000357436.4,ENST00000469947.1,ENST00000442465.2,ENST00000336738.5,ENST00000417536.1	chr22	38037132:38037175:38037380:38037485:38038545:38038622,	38037381	38037485	38037403	38037403	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-DD-A39Y-01	SH3BP1	ENST00000417536.1	chr22	38044325:38044442:38046092:38046256:38046548:38046621,	38046093	38046256	38046114	38046114	Frame_Shift_Del	G	-	p.L446fs
LIHC	TCGA-DD-A39Y-01	LGALS1	ENST00000425542.1,ENST00000215909.5,ENST00000489315.1	chr22	38073005:38073072:38074489:38074661:38075609:38075647,	38074490	38074661	38074509	38074509	Frame_Shift_Del	A	-	p.K37fs
LIHC	TCGA-DD-A39Y-01	LGALS1	ENST00000472321.1	chr22	38073005:38073072:38074382:38074661:38075609:38075647,	38074383	38074661	38074509	38074509	Frame_Shift_Del	A	-	p.K37fs
LIHC	TCGA-DD-A39Y-01	MICALL1	ENST00000454685.1	chr22	38321853:38322050:38323417:38323827:38327805:38327940,	38323418	38323827	38323592	38323592	Frame_Shift_Del	C	-	p.T547fs
LIHC	TCGA-DD-A39Y-01	MICALL1	ENST00000215957.6	chr22	38321853:38322050:38323417:38323833:38327805:38327940,	38323418	38323833	38323592	38323592	Frame_Shift_Del	C	-	p.T547fs
LIHC	TCGA-DD-A39Y-01	C22orf23	ENST00000249079.2,ENST00000403305.1,ENST00000403026.1,ENST00000422191.1,ENST00000418863.1	chr22	38341167:38341180:38343287:38343470:38347466:38347529,	38343288	38343470	38343453	38343453	Frame_Shift_Del	G	-	p.L62fs
LIHC	TCGA-DD-A39Y-01	PICK1	ENST00000466374.1,ENST00000356976.3,ENST00000424694.1,ENST00000484021.1,ENST00000468288.1,ENST00000435166.1,ENST00000437453.1,ENST00000404072.3	chr22	38455240:38455352:38461008:38461137:38463710:38463777,	38461009	38461137	38461031	38461031	Frame_Shift_Del	C	-	p.A59fs
LIHC	TCGA-DD-A39Y-01	BAIAP2L2	ENST00000428572.1	chr22	38481171:38481382:38482248:38482456:38483130:38483271,	38482249	38482456	38482439	38482439	Frame_Shift_Del	C	-	p.G426fs
LIHC	TCGA-DD-A39Y-01	PLA2G6	ENST00000335539.3,ENST00000402064.1,ENST00000332509.3,ENST00000448094.1,ENST00000427114.1,ENST00000452542.1	chr22	38525547:38525569:38528837:38529020:38530994:38531070,	38528838	38529020	38529000	38529000	Frame_Shift_Del	T	-	p.K305fs
LIHC	TCGA-DD-A39Y-01	TMEM184B	ENST00000361684.4,ENST00000436674.1,ENST00000361906.3	chr22	38615330:38617717:38620791:38620986:38621430:38621600,	38620792	38620986	38620841	38620841	Frame_Shift_Del	C	-	p.R311fs
LIHC	TCGA-DD-A39Y-01	DDX17	ENST00000216019.7	chr22	38881882:38882445:38883883:38888120:38889714:38889776,	38883884	38888120	38883927	38883927	Frame_Shift_Del	T	-	p.K547fs
LIHC	TCGA-DD-A39Y-01	JOSD1	ENST00000427389.1	chr22	39085078:39085134:39085300:39085429:39095807:39095975,	39085301	39085429	39085418	39085418	Frame_Shift_Del	T	-	p.N66fs
LIHC	TCGA-DD-A39Y-01	GTPBP1	ENST00000216044.5	chr22	39122010:39122155:39122262:39122445:39123217:39123353,	39122263	39122445	39122340	39122340	Frame_Shift_Del	C	-	p.D432fs
LIHC	TCGA-DD-A39Y-01	GRAP2	ENST00000478445.1	chr22	40343096:40343188:40351822:40351914:40356058:40356178,40322652:40322857:40351822:40351914:40356058:40356178,	40351823	40351914	40351883	40351883	Frame_Shift_Del	C	-	p.P47fs
LIHC	TCGA-DD-A39Y-01	SGSM3	ENST00000478085.1,ENST00000248929.9,ENST00000485962.1,ENST00000454798.2	chr22	40801652:40801848:40802081:40802227:40802441:40802666,	40802082	40802227	40802116	40802116	Frame_Shift_Del	G	-	p.T283fs
LIHC	TCGA-DD-A39Y-01	POLR3H	ENST00000431534.1	chr22	41928122:41928161:41928607:41928749:41936702:41936799,	41928608	41928749	41928688	41928688	Frame_Shift_Del	T	-	p.K90fs
LIHC	TCGA-DD-A39Y-01	POLR3H	ENST00000432789.1,ENST00000355209.4,ENST00000407461.1,ENST00000396504.2	chr22	41928122:41928161:41928662:41928749:41936702:41936799,	41928663	41928749	41928688	41928688	Frame_Shift_Del	T	-	p.K90fs
LIHC	TCGA-DD-A39Y-01	PMM1	ENST00000485648.1,ENST00000216259.7,ENST00000482178.1,ENST00000472620.1,ENST00000463617.1	chr22	41972940:41973444:41973811:41973927:41974809:41974885,	41973812	41973927	41973830	41973830	Frame_Shift_Del	A	-	p.F216fs
LIHC	TCGA-DD-A39Y-01	PMM1	ENST00000466645.1,ENST00000216259.7,ENST00000414636.1	chr22	41980023:41980062:41980284:41980376:41980530:41980607,	41980285	41980376	41980352	41980352	Frame_Shift_Del	C	-	p.E103fs
LIHC	TCGA-DD-A39Y-01	SREBF2	ENST00000361204.4	chr22	42273232:42273425:42273945:42274127:42276719:42276996,	42273946	42274127	42273951	42273951	Frame_Shift_Del	G	-	p.G530fs
LIHC	TCGA-DD-A39Y-01	WBP2NL	ENST00000329620.5,ENST00000445185.1,ENST00000475341.1,ENST00000436265.1,ENST00000543212.1,ENST00000328823.9	chr22	42416007:42416100:42418252:42418360:42422769:42422798,	42418253	42418360	42418321	42418321	Frame_Shift_Del	G	-	p.G159fs
LIHC	TCGA-DD-A39Y-01	RRP7A	ENST00000483303.1	chr22	42912016:42912302:42914010:42914153:42915719:42915800,	42914011	42914153	42914041	42914041	Frame_Shift_Del	A	-	p.F62fs
LIHC	TCGA-DD-A39Y-01	CYB5R3	ENST00000402438.1,ENST00000361740.4,ENST00000352397.5,ENST00000396303.3,ENST00000438270.1,ENST00000407332.1,ENST00000407623.3	chr22	43026887:43026994:43027383:43027456:43032720:43032852,	43027384	43027456	43027424	43027424	Frame_Shift_Del	A	-	p.F95fs
LIHC	TCGA-DD-A39Y-01	ARFGAP3	ENST00000437119.2,ENST00000263245.5,ENST00000429508.2,ENST00000453516.1	chr22	43213734:43213863:43218275:43218415:43219661:43219708,	43218276	43218415	43218401	43218401	Frame_Shift_Del	T	-	p.K229fs
LIHC	TCGA-DD-A39Y-01	TTLL1	ENST00000331018.7,ENST00000266254.7	chr22	43464415:43464596:43465641:43465850:43471479:43471596,	43465642	43465850	43465728	43465728	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-DD-A39Y-01	EFCAB6	ENST00000262726.7,ENST00000396231.2,ENST00000461800.1	chr22	43924659:43924855:43926694:43926844:43930567:43930752,	43926695	43926844	43926715	43926715	Frame_Shift_Del	T	-	p.S1455fs
LIHC	TCGA-DD-A39Y-01	EFCAB6	ENST00000468552.1	chr22	43995948:43996143:44004361:44004480:44022326:44022559,	44004362	44004480	44004396	44004396	Frame_Shift_Del	G	-	p.L883fs
LIHC	TCGA-DD-A39Y-01	EFCAB6	ENST00000262726.7,ENST00000468552.1,ENST00000396231.2	chr22	44064751:44064925:44067852:44068013:44068125:44068150,	44067853	44068013	44067899	44067899	Frame_Shift_Del	T	-	p.I532fs
LIHC	TCGA-DD-A39Y-01	EFCAB6	ENST00000404038.1,ENST00000262726.7,ENST00000396231.2	chr22	44079626:44079735:44083350:44083461:44107354:44107503,	44083351	44083461	44083392	44083392	Frame_Shift_Del	C	-	p.G367fs
LIHC	TCGA-DD-A39Y-01	EFCAB6	ENST00000356087.4,ENST00000358439.4	chr22	44151645:44151712:44161184:44161273:44178059:44178205,	44161185	44161273	44161254	44161254	Frame_Shift_Del	C	-	p.G124fs
LIHC	TCGA-DD-A39Y-01	SMC1B	ENST00000357450.4	chr22	45745608:45745678:45748330:45748482:45749857:45750012,	45748331	45748482	45748376	45748376	Frame_Shift_Del	C	-	p.G1127fs
LIHC	TCGA-DD-A39Y-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45789513:45789721:45790564:45790647:45792225:45792366,	45790565	45790647	45790574	45790574	Frame_Shift_Del	T	-	p.K443fs
LIHC	TCGA-DD-A39Y-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45792225:45792366:45794974:45795233:45798212:45798451,	45794975	45795233	45795033	45795033	Frame_Shift_Del	T	-	p.K352fs
LIHC	TCGA-DD-A39Y-01	CDPF1	ENST00000314567.3	chr22	46640992:46641135:46643006:46643118:46646152:46646186,46640992:46641135:46643006:46643118:46644068:46644181,	46643007	46643118	46643035	46643035	Frame_Shift_Del	A	-	p.L66fs
LIHC	TCGA-DD-A39Y-01	FAM19A5	ENST00000358295.5,ENST00000402357.1	chr22	49042408:49042558:49103528:49103656:49145650:49146220,	49103529	49103656	49103578	49103578	Frame_Shift_Del	G	-	p.E97fs
LIHC	TCGA-DD-A39Y-01	CRELD2	ENST00000404488.3,ENST00000483652.1,ENST00000328268.4	chr22	50316259:50316355:50318007:50318103:50319064:50319205,50316881:50316965:50318007:50318103:50319064:50319205,	50318008	50318103	50318041	50318041	Frame_Shift_Del	A	-	p.E318fs
LIHC	TCGA-DD-A39Y-01	MOV10L1	ENST00000395858.3,ENST00000262794.5,ENST00000545383.1,ENST00000395852.1,ENST00000540615.1	chr22	50588043:50588143:50589163:50589328:50591473:50591647,	50589164	50589328	50589245	50589245	Frame_Shift_Del	T	-	p.F937fs
LIHC	TCGA-DD-A39Y-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50721139:50721310:50721478:50721615:50721765:50721874,	50721479	50721615	50721534	50721534	Frame_Shift_Del	C	-	p.D921fs
LIHC	TCGA-DD-A39Y-01	PPP6R2	ENST00000359139.3,ENST00000427222.2	chr22	50876602:50876727:50877027:50877191:50878129:50878286,50876602:50876727:50877027:50877191:50878126:50878286,	50877028	50877191	50877166	50877166	Frame_Shift_Del	G	-	p.A674fs
LIHC	TCGA-DD-A39Y-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000401672.3,ENST00000427222.2,ENST00000216061.5	chr22	50879250:50879455:50882294:50882546:50882627:50882800,	50882295	50882546	50882377	50882377	Frame_Shift_Del	C	-	p.P863fs
LIHC	TCGA-DD-A39Y-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000401672.3,ENST00000427222.2,ENST00000216061.5	chr22	50879250:50879455:50882294:50882546:50882627:50882800,	50882295	50882546	50882479	50882479	Frame_Shift_Del	G	-	p.G896fs
LIHC	TCGA-DD-A39Y-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000401672.3,ENST00000427222.2,ENST00000216061.5	chr22	50879250:50879455:50882294:50882546:50882627:50882800,	50882295	50882546	50882538	50882538	Frame_Shift_Del	A	-	p.T915fs
LIHC	TCGA-DD-A39Y-01	SBF1	ENST00000380817.3,ENST00000399627.3,ENST00000348911.6,ENST00000390679.3	chr22	50904859:50904911:50905033:50905139:50905766:50905872,	50905034	50905139	50905121	50905121	Frame_Shift_Del	C	-	p.A190fs
LIHC	TCGA-DD-A39Y-01	MIOX	ENST00000395732.3	chr22	50927825:50927875:50927960:50928059:50928176:50928405,	50927961	50928059	50928058	50928058	Frame_Shift_Del	G	-	p.W245fs
LIHC	TCGA-DD-A39Y-01	MIOX	ENST00000451761.1,ENST00000216075.6	chr22	50927825:50927875:50927960:50928073:50928176:50928405,	50927961	50928073	50928058	50928058	Frame_Shift_Del	G	-	p.W245fs
LIHC	TCGA-DD-A39Y-01	LMF2	ENST00000505981.1,ENST00000380796.3,ENST00000474879.2,ENST00000216080.5	chr22	50944124:50944244:50944463:50944642:50944713:50944931,	50944464	50944642	50944500	50944500	Frame_Shift_Del	G	-	p.P221fs
LIHC	TCGA-DD-A39Y-01	NCAPH2	ENST00000395701.3,ENST00000395698.3,ENST00000523045.1,ENST00000299821.11,ENST00000420993.2	chr22	50956401:50956481:50956561:50956707:50957077:50957161,	50956562	50956707	50956617	50956617	Frame_Shift_Del	C	-	p.P186fs
LIHC	TCGA-DD-A39Y-01	NCAPH2	ENST00000395701.3,ENST00000395698.3,ENST00000523045.1,ENST00000299821.11,ENST00000420993.2	chr22	50956401:50956481:50956561:50956707:50957077:50957161,	50956562	50956707	50956660	50956660	Frame_Shift_Del	C	-	p.S200fs
LIHC	TCGA-DD-A39Y-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51160703	51160703	Frame_Shift_Del	G	-	p.R1467fs
LIHC	TCGA-DD-A39Y-01	RABL2B	ENST00000436958.1	chr22	51207468:51207552:51207852:51207980:51214199:51214261,	51207853	51207980	51207895	51207895	Frame_Shift_Del	G	-	p.T165fs
LIHC	TCGA-DD-A39Y-01	RABL2B	ENST00000425098.1	chr22	51207468:51207552:51207882:51207980:51214199:51214261,	51207883	51207980	51207895	51207895	Frame_Shift_Del	G	-	p.T165fs
LIHC	TCGA-DD-A39Y-01	RABL2B	ENST00000464740.1,ENST00000395598.3,ENST00000395590.1	chr22	51216379:51216409:51220615:51220775:51221928:51222028,	51220616	51220775	51220707	51220707	Frame_Shift_Del	T	-	p.T6fs
LIHC	TCGA-DD-A39Y-01	RABL2B	ENST00000354869.3,ENST00000436958.1,ENST00000395591.1	chr22	51216379:51216409:51220615:51220779:51221928:51222028,	51220616	51220779	51220707	51220707	Frame_Shift_Del	T	-	p.T6fs
LIHC	TCGA-DD-A39Y-01	PPP2R3B	ENST00000445792.2,ENST00000496630.1,ENST00000390665.3	chrX	307968:308071:308324:308428:322139:322251,	308325	308428	308336	308336	Frame_Shift_Del	G	-	p.A201fs
LIHC	TCGA-DD-A39Y-01	DHRSX	ENST00000334651.5,ENST00000444280.1	chrX	2255871:2256040:2326785:2326854:2343237:2343345,2310394:2310515:2326785:2326854:2343237:2343345,2209542:2209644:2326785:2326854:2343237:2343345,	2326786	2326854	2326808	2326808	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-DD-A39Y-01	DHRSX	ENST00000334651.5,ENST00000444280.1	chrX	2255871:2256040:2326785:2326854:2343237:2343345,2310394:2310515:2326785:2326854:2343237:2343345,2209542:2209644:2326785:2326854:2343237:2343345,	2326786	2326854	2326813	2326813	Frame_Shift_Del	T	-	p.I87fs
LIHC	TCGA-DD-A39Y-01	ARSF	ENST00000537104.1,ENST00000381127.1,ENST00000359361.2	chrX	3019127:3019262:3021802:3021965:3028168:3028293,	3021803	3021965	3021917	3021917	Frame_Shift_Del	T	-	p.I406fs
LIHC	TCGA-DD-A39Y-01	NLGN4X	ENST00000275857.6,ENST00000381095.3,ENST00000538097.1,ENST00000381092.1,ENST00000381093.2	chrX	5821117:5821907:5827094:5827280:5947320:5947473,	5827095	5827280	5827143	5827143	Frame_Shift_Del	C	-	p.A255fs
LIHC	TCGA-DD-A39Y-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7894100	7894100	Frame_Shift_Del	C	-	p.A22fs
LIHC	TCGA-DD-A39Y-01	GPR143	ENST00000447366.1,ENST00000380929.2,ENST00000467482.1,ENST00000431126.1	chrX	9716613:9716706:9727371:9727466:9728756:9728866,	9727372	9727466	9727435	9727435	Frame_Shift_Del	A	-	p.F131fs
LIHC	TCGA-DD-A39Y-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13765009	13765009	Frame_Shift_Del	A	-	p.A115fs
LIHC	TCGA-DD-A39Y-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000380550.3,ENST00000340096.6	chrX	13780462:13780563:13785245:13785403:13786172:13786343,13781869:13781974:13785245:13785403:13786172:13786343,	13785246	13785403	13785285	13785285	Frame_Shift_Del	A	-	p.E740fs
LIHC	TCGA-DD-A39Y-01	GPM6B	ENST00000454189.2	chrX	13801567:13801640:13803740:13803927:13956625:13956757,	13803741	13803927	13803780	13803780	Frame_Shift_Del	A	-	p.F51fs
LIHC	TCGA-DD-A39Y-01	MOSPD2	ENST00000482354.1,ENST00000380492.3,ENST00000495110.1	chrX	14921087:14921126:14926981:14927106:14929358:14929535,	14926982	14927106	14927047	14927047	Frame_Shift_Del	A	-	p.K215fs
LIHC	TCGA-DD-A39Y-01	ASB9	ENST00000473862.1,ENST00000380488.4,ENST00000477346.2,ENST00000546332.1,ENST00000380485.3	chrX	15266865:15267057:15268551:15268686:15270375:15270439,	15268552	15268686	15268577	15268577	Frame_Shift_Del	G	-	p.A181fs
LIHC	TCGA-DD-A39Y-01	ASB9	ENST00000380483.3	chrX	15266865:15267057:15268551:15268656:15270375:15270439,	15268552	15268656	15268577	15268577	Frame_Shift_Del	G	-	p.A181fs
LIHC	TCGA-DD-A39Y-01	ASB11	ENST00000380470.3	chrX	15311291:15311442:15315695:15315752:15320849:15320929,	15315696	15315752	15315706	15315706	Frame_Shift_Del	T	-	p.N99fs
LIHC	TCGA-DD-A39Y-01	ASB11	ENST00000480796.1,ENST00000485437.2,ENST00000344384.4,ENST00000537676.1	chrX	15311291:15311442:15315695:15315803:15320849:15320929,	15315696	15315803	15315706	15315706	Frame_Shift_Del	T	-	p.N99fs
LIHC	TCGA-DD-A39Y-01	ZRSR2	ENST00000307771.7	chrX	15818005:15818076:15821810:15821919:15822233:15822320,	15821811	15821919	15821896	15821896	Frame_Shift_Del	A	-	p.K98fs
LIHC	TCGA-DD-A39Y-01	SYAP1	ENST00000495743.1	chrX	16737893:16738022:16753349:16753468:16754288:16754355,	16753350	16753468	16753423	16753423	Frame_Shift_Del	A	-	p.I83fs
LIHC	TCGA-DD-A39Y-01	TXLNG	ENST00000398155.4,ENST00000380122.5	chrX	16855715:16855808:16857943:16858039:16859550:16862640,	16857944	16858039	16857959	16857959	Frame_Shift_Del	A	-	p.K391fs
LIHC	TCGA-DD-A39Y-01	REPS2	ENST00000380064.4	chrX	17086527:17086594:17088062:17088116:17121840:17121902,	17088063	17088116	17088068	17088068	Frame_Shift_Del	A	-	p.K429fs
LIHC	TCGA-DD-A39Y-01	SCML2	ENST00000398048.3,ENST00000251900.4	chrX	18265888:18266002:18274967:18275150:18276163:18276367,	18274968	18275150	18274976	18274976	Frame_Shift_Del	T	-	p.N483fs
LIHC	TCGA-DD-A39Y-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379697.3,ENST00000379698.4	chrX	19649981:19650076:19663517:19663593:19688979:19689116,19649981:19650076:19663517:19663593:19701940:19702146,	19663518	19663593	19663542	19663542	Frame_Shift_Del	T	-	p.T260fs
LIHC	TCGA-DD-A39Y-01	MAP7D2	ENST00000452324.3,ENST00000485173.1,ENST00000543767.1,ENST00000379651.3,ENST00000379643.5,ENST00000443379.3	chrX	20031686:20031743:20033340:20033445:20034211:20034289,	20033341	20033445	20033418	20033418	Frame_Shift_Del	C	-	p.E517fs
LIHC	TCGA-DD-A39Y-01	CNKSR2	ENST00000379510.3,ENST00000279451.4,ENST00000425654.2	chrX	21519637:21519706:21534602:21534749:21544984:21545118,	21534603	21534749	21534618	21534618	Frame_Shift_Del	A	-	p.K276fs
LIHC	TCGA-DD-A39Y-01	MBTPS2	ENST00000379484.5	chrX	21887615:21887796:21896159:21896254:21896614:21896810,	21896160	21896254	21896222	21896222	Frame_Shift_Del	T	-	p.F345fs
LIHC	TCGA-DD-A39Y-01	SMS	ENST00000379404.1	chrX	21958895:21958991:21985313:21985434:21995178:21995354,	21985314	21985434	21985342	21985342	Frame_Shift_Del	C	-	p.L26fs
LIHC	TCGA-DD-A39Y-01	ACOT9	ENST00000473710.1,ENST00000336430.7,ENST00000494361.1,ENST00000379303.5,ENST00000449612.2,ENST00000379295.1	chrX	23725993:23726061:23731251:23731325:23739997:23740101,	23731252	23731325	23731307	23731307	Frame_Shift_Del	A	-	p.C203fs
LIHC	TCGA-DD-A39Y-01	APOO	ENST00000490078.1	chrX	23876758:23876850:23886709:23886805:23892519:23892574,23876758:23876850:23886709:23886805:23897031:23897151,	23886710	23886805	23886784	23886784	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A39Y-01	EIF2S3	ENST00000253039.4	chrX	24084114:24084209:24086080:24086225:24089674:24089844,	24086081	24086225	24086175	24086175	Frame_Shift_Del	T	-	p.L321fs
LIHC	TCGA-DD-A39Y-01	ZFX	ENST00000379177.1,ENST00000539115.1,ENST00000338565.3,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24226334:24226487:24227016:24227157:24228309:24229716,	24227017	24227157	24227110	24227110	Frame_Shift_Del	A	-	p.Q396fs
LIHC	TCGA-DD-A39Y-01	GK	ENST00000481024.1,ENST00000378943.3,ENST00000427190.1,ENST00000378941.3,ENST00000378945.3	chrX	30671654:30671732:30683627:30683701:30695491:30695569,30671654:30671732:30683627:30683701:30686128:30686235,	30683628	30683701	30683678	30683678	Frame_Shift_Del	A	-	p.I43fs
LIHC	TCGA-DD-A39Y-01	GK	ENST00000471362.1	chrX	30709239:30709316:30712516:30712654:30714158:30714179,30695491:30695569:30712516:30712654:30714158:30714179,	30712517	30712654	30712536	30712536	Frame_Shift_Del	T	-	p.L145fs
LIHC	TCGA-DD-A39Y-01	GK	ENST00000471362.1	chrX	30709239:30709316:30712516:30712654:30714158:30714179,30695491:30695569:30712516:30712654:30714158:30714179,	30712517	30712654	30712611	30712611	Frame_Shift_Del	A	-	p.E170fs
LIHC	TCGA-DD-A39Y-01	GK	ENST00000481024.1,ENST00000378943.3,ENST00000378946.3,ENST00000427190.1,ENST00000378945.3	chrX	30718530:30718566:30718954:30719022:30725672:30725715,	30718955	30719022	30718989	30718989	Frame_Shift_Del	A	-	p.Q267fs
LIHC	TCGA-DD-A39Y-01	DMD	ENST00000357033.4,ENST00000378677.2	chrX	32364059:32364197:32366522:32366645:32380904:32381075,	32366523	32366645	32366595	32366595	Frame_Shift_Del	T	-	p.K1792fs
LIHC	TCGA-DD-A39Y-01	RPGR	ENST00000474584.1,ENST00000342811.3,ENST00000318842.7,ENST00000339363.3,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38160499:38160624:38163887:38164043:38169867:38170023,	38163888	38164043	38163979	38163979	Frame_Shift_Del	A	-	p.F281fs
LIHC	TCGA-DD-A39Y-01	RPGR	ENST00000474584.1,ENST00000342811.3,ENST00000339363.3,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38182105:38182198:38182651:38182777:38186592:38186675,	38182652	38182777	38182705	38182705	Frame_Shift_Del	T	-	p.N34fs
LIHC	TCGA-DD-A39Y-01	ATP6AP2	ENST00000378438.4,ENST00000447485.1,ENST00000544975.1	chrX	40450485:40450617:40456500:40456596:40456778:40456916,	40456501	40456596	40456571	40456571	Frame_Shift_Del	T	-	p.V124fs
LIHC	TCGA-DD-A39Y-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41048561:41048728:41055503:41055612:41055844:41055991,	41055504	41055612	41055561	41055561	Frame_Shift_Del	G	-	p.M1345fs
LIHC	TCGA-DD-A39Y-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41048561:41048728:41055503:41055612:41055844:41055991,	41055504	41055612	41055609	41055609	Frame_Shift_Del	G	-	p.L1361fs
LIHC	TCGA-DD-A39Y-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41057780:41058003:41060312:41060533:41064555:41064746,	41060313	41060533	41060510	41060510	Frame_Shift_Del	G	-	p.G1601fs
LIHC	TCGA-DD-A39Y-01	DDX3X	ENST00000542215.1	chrX	41201989:41202089:41202468:41202604:41202989:41203075,41201989:41202089:41202468:41202604:41203282:41203381,	41202469	41202604	41202501	41202501	Frame_Shift_Del	G	-	p.M192fs
LIHC	TCGA-DD-A39Y-01	KRBOX4	ENST00000344302.4,ENST00000360017.5,ENST00000476762.1,ENST00000377919.2,ENST00000298190.6,ENST00000478600.1,ENST00000487081.1	chrX	46309865:46309910:46322182:46322309:46322632:46322712,	46322183	46322309	46322216	46322216	Frame_Shift_Del	T	-	p.F17fs
LIHC	TCGA-DD-A39Y-01	UBA1	ENST00000377351.4,ENST00000335972.6	chrX	47062939:47063095:47065346:47065512:47065646:47065729,	47065347	47065512	47065460	47065460	Frame_Shift_Del	T	-	p.D563fs
LIHC	TCGA-DD-A39Y-01	CDK16	ENST00000462827.2,ENST00000520141.1,ENST00000523344.1,ENST00000518022.1,ENST00000428400.1,ENST00000357227.4,ENST00000457458.2,ENST00000276052.6	chrX	47086579:47086622:47086777:47086868:47087965:47088009,	47086778	47086868	47086783	47086783	Frame_Shift_Del	G	-	p.E436fs
LIHC	TCGA-DD-A39Y-01	CFP	ENST00000485991.1,ENST00000396992.3,ENST00000247153.3,ENST00000377005.2	chrX	47485726:47485918:47486171:47486345:47486539:47486731,	47486172	47486345	47486308	47486308	Frame_Shift_Del	G	-	p.P268fs
LIHC	TCGA-DD-A39Y-01	WDR13	ENST00000479279.1,ENST00000471334.1,ENST00000498631.1,ENST00000376729.5,ENST00000497756.2,ENST00000218056.5	chrX	48457740:48457850:48457974:48458105:48458706:48458889,	48457975	48458105	48458030	48458030	Frame_Shift_Del	G	-	p.G150fs
LIHC	TCGA-DD-A39Y-01	WDR13	ENST00000466962.1	chrX	48457740:48457850:48457986:48458105:48458706:48458889,	48457987	48458105	48458030	48458030	Frame_Shift_Del	G	-	p.G150fs
LIHC	TCGA-DD-A39Y-01	WAS	ENST00000376701.4	chrX	48546688:48546842:48547048:48547455:48547708:48547823,	48547049	48547455	48547102	48547102	Frame_Shift_Del	C	-	p.P330fs
LIHC	TCGA-DD-A39Y-01	WAS	ENST00000376701.4	chrX	48546688:48546842:48547048:48547455:48547708:48547823,	48547049	48547455	48547113	48547113	Frame_Shift_Del	G	-	p.V332fs
LIHC	TCGA-DD-A39Y-01	WAS	ENST00000376701.4	chrX	48546688:48546842:48547048:48547455:48547708:48547823,	48547049	48547455	48547192	48547192	Frame_Shift_Del	C	-	p.P362fs
LIHC	TCGA-DD-A39Y-01	HDAC6	ENST00000441703.1,ENST00000462730.1	chrX	48660516:48660549:48661069:48661192:48661277:48661337,48660598:48660642:48661069:48661192:48661277:48661337,48660397:48660429:48661069:48661192:48661277:48661406,48660613:48660679:48661069:48661192:48661277:48661337,	48661070	48661192	48661166	48661166	Frame_Shift_Del	C	-	p.P24fs
LIHC	TCGA-DD-A39Y-01	OTUD5	ENST00000156084.4,ENST00000376488.3,ENST00000455452.1,ENST00000396743.3,ENST00000428668.2	chrX	48780413:48780572:48780909:48781023:48781127:48781329,	48780910	48781023	48780976	48780976	Frame_Shift_Del	G	-	p.L510fs
LIHC	TCGA-DD-A39Y-01	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49065721:49065853:49066088:49066219:49066400:49066502,	49066089	49066219	49066137	49066137	Frame_Shift_Del	T	-	p.K1602fs
LIHC	TCGA-DD-A39Y-01	FOXP3	ENST00000376199.2,ENST00000557224.1,ENST00000376197.1,ENST00000518685.1	chrX	49113381:49113469:49113883:49114022:49114752:49114901,	49113884	49114022	49113971	49113971	Frame_Shift_Del	G	-	p.L123fs
LIHC	TCGA-DD-A39Y-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50053624	50053624	Frame_Shift_Del	C	-	p.P819fs
LIHC	TCGA-DD-A39Y-01	SMC1A	ENST00000322213.4	chrX	53407540:53407651:53407938:53408008:53409152:53409304,	53407939	53408008	53407993	53407993	Frame_Shift_Del	G	-	p.P1151fs
LIHC	TCGA-DD-A39Y-01	SMC1A	ENST00000375340.6,ENST00000322213.4	chrX	53432424:53432604:53432702:53432888:53435992:53436200,	53432703	53432888	53432821	53432821	Frame_Shift_Del	A	-	p.L538fs
LIHC	TCGA-DD-A39Y-01	HUWE1	ENST00000427052.1,ENST00000218328.8,ENST00000342160.3,ENST00000262854.6	chrX	53620323:53620561:53621458:53621581:53622146:53622363,	53621459	53621581	53621494	53621494	Frame_Shift_Del	T	-	p.K1156fs
LIHC	TCGA-DD-A39Y-01	RRAGB	ENST00000262850.7	chrX	55748623:55748718:55753739:55753823:55755726:55755793,	55753740	55753823	55753816	55753816	Frame_Shift_Del	A	-	p.T101fs
LIHC	TCGA-DD-A39Y-01	FAAH2	ENST00000374900.4	chrX	57405083:57405219:57407344:57407462:57458350:57458470,	57407345	57407462	57407360	57407360	Frame_Shift_Del	A	-	p.T298fs
LIHC	TCGA-DD-A39Y-01	ARHGEF9	ENST00000437457.2,ENST00000253401.6,ENST00000374878.1,ENST00000374872.1,ENST00000374870.4	chrX	62863875:62863928:62875373:62875617:62893917:62894018,62863875:62863928:62875373:62875617:62885765:62885897,	62875374	62875617	62875398	62875398	Frame_Shift_Del	T	-	p.M426fs
LIHC	TCGA-DD-A39Y-01	MTMR8	ENST00000374852.3	chrX	63576055:63576218:63579284:63579407:63615219:63615311,	63579285	63579407	63579332	63579332	Frame_Shift_Del	G	-	p.H34fs
LIHC	TCGA-DD-A39Y-01	ZC4H2	ENST00000337990.2,ENST00000374839.3,ENST00000476032.1,ENST00000545618.1,ENST00000488831.1	chrX	64137737:64137776:64138921:64139084:64139960:64140007,	64138922	64139084	64139033	64139033	Frame_Shift_Del	G	-	p.P145fs
LIHC	TCGA-DD-A39Y-01	MSN	ENST00000360270.5	chrX	64947675:64947771:64949299:64949574:64950968:64951052,	64949300	64949574	64949368	64949368	Frame_Shift_Del	G	-	p.E87fs
LIHC	TCGA-DD-A39Y-01	VSIG4	ENST00000412866.2	chrX	65247891:65247954:65253315:65253672:65259785:65259902,	65253316	65253672	65253560	65253560	Frame_Shift_Del	C	-	p.W56fs
LIHC	TCGA-DD-A39Y-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393637	65393637	Frame_Shift_Del	A	-	p.K261fs
LIHC	TCGA-DD-A39Y-01	AR	ENST00000396043.2,ENST00000374690.3	chrX	66941674:66941805:66942668:66942826:66943527:66943778,	66942669	66942826	66942686	66942686	Frame_Shift_Del	A	-	p.K823fs
LIHC	TCGA-DD-A39Y-01	IGBP1	ENST00000356413.4	chrX	69353572:69353985:69354372:69354666:69366482:69366678,	69354373	69354666	69354566	69354566	Frame_Shift_Del	A	-	p.K128fs
LIHC	TCGA-DD-A39Y-01	GDPD2	ENST00000536730.1	chrX	69642990:69643232:69645203:69645307:69645612:69645706,	69645204	69645307	69645270	69645270	Frame_Shift_Del	G	-	p.G58fs
LIHC	TCGA-DD-A39Y-01	DLG3	ENST00000489733.1,ENST00000463252.1,ENST00000542398.1,ENST00000374355.3	chrX	69712370:69712446:69713225:69713325:69715257:69715303,69712370:69712446:69713225:69713325:69717029:69717071,	69713226	69713325	69713244	69713244	Frame_Shift_Del	A	-	p.K262fs
LIHC	TCGA-DD-A39Y-01	TEX11	ENST00000374333.2,ENST00000395889.2,ENST00000374320.2,ENST00000344304.3	chrX	69844688:69844774:69849460:69849585:69871299:69871402,	69849461	69849585	69849507	69849507	Frame_Shift_Del	C	-	p.G536fs
LIHC	TCGA-DD-A39Y-01	SLC7A3	ENST00000298085.4	chrX	70148693:70148852:70149477:70149848:70150826:70150946,	70149478	70149848	70149625	70149625	Frame_Shift_Del	G	-	p.L75fs
LIHC	TCGA-DD-A39Y-01	MED12	ENST00000333646.6,ENST00000374102.1,ENST00000374080.3	chrX	70352226:70352388:70352694:70352806:70352972:70353062,	70352695	70352806	70352784	70352784	Frame_Shift_Del	C	-	p.S1502fs
LIHC	TCGA-DD-A39Y-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387067	70387067	Frame_Shift_Del	T	-	p.F354fs
LIHC	TCGA-DD-A39Y-01	ZMYM3	ENST00000353904.2,ENST00000489332.1,ENST00000373998.1,ENST00000373988.1,ENST00000314425.5	chrX	70461076:70461194:70462019:70462274:70462819:70462934,	70462020	70462274	70462162	70462162	Frame_Shift_Del	A	-	p.F1208fs
LIHC	TCGA-DD-A39Y-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470457	70470457	Frame_Shift_Del	C	-	p.A300fs
LIHC	TCGA-DD-A39Y-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472675	70472675	Frame_Shift_Del	A	-	p.L144fs
LIHC	TCGA-DD-A39Y-01	TAF1	ENST00000373790.4,ENST00000478305.1,ENST00000449580.1,ENST00000423759.1,ENST00000276072.3	chrX	70608086:70608228:70608587:70608718:70609434:70609480,	70608588	70608718	70608628	70608628	Frame_Shift_Del	T	-	p.R869fs
LIHC	TCGA-DD-A39Y-01	OGT	ENST00000498566.1	chrX	70753149:70753186:70756027:70756208:70757678:70757922,	70756028	70756208	70756036	70756036	Frame_Shift_Del	A	-	p.K16fs
LIHC	TCGA-DD-A39Y-01	OGT	ENST00000488174.1,ENST00000373719.3,ENST00000373701.3	chrX	70782696:70782867:70782979:70783096:70783178:70783349,	70782980	70783096	70782997	70782997	Frame_Shift_Del	T	-	p.D722fs
LIHC	TCGA-DD-A39Y-01	SLC16A2	ENST00000587091.1,ENST00000276033.5	chrX	73744193:73744644:73745584:73745728:73749047:73749276,	73745585	73745728	73745648	73745648	Frame_Shift_Del	G	-	p.G438fs
LIHC	TCGA-DD-A39Y-01	SLC16A2	ENST00000587091.1,ENST00000276033.5	chrX	73745584:73745728:73749047:73749276:73751167:73752443,	73749048	73749276	73749108	73749108	Frame_Shift_Del	G	-	p.G486fs
LIHC	TCGA-DD-A39Y-01	ABCB7	ENST00000529949.1,ENST00000339447.4,ENST00000534570.1,ENST00000253577.3,ENST00000373394.3	chrX	74288841:74288971:74289125:74289289:74290199:74290357,	74289126	74289289	74289197	74289197	Frame_Shift_Del	T	-	p.K487fs
LIHC	TCGA-DD-A39Y-01	ABCB7	ENST00000529949.1,ENST00000339447.4,ENST00000253577.3,ENST00000373394.3	chrX	74290199:74290357:74291343:74291518:74293523:74293611,	74291344	74291518	74291443	74291443	Frame_Shift_Del	T	-	p.S371fs
LIHC	TCGA-DD-A39Y-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918921	76918921	Frame_Shift_Del	T	-	p.K1357fs
LIHC	TCGA-DD-A39Y-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77243737:77244227:77244728:77245454:77253974:77254181,	77244729	77245454	77245318	77245318	Frame_Shift_Del	A	-	p.S400fs
LIHC	TCGA-DD-A39Y-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77264598:77264760:77266672:77266749:77266945:77267171,	77266673	77266749	77266681	77266681	Frame_Shift_Del	T	-	p.G626fs
LIHC	TCGA-DD-A39Y-01	BRWD3	ENST00000478415.1,ENST00000373275.4	chrX	80047352:80047451:80049120:80049271:80064037:80064097,	80049121	80049271	80049238	80049238	Frame_Shift_Del	G	-	p.L73fs
LIHC	TCGA-DD-A39Y-01	KLHL4	ENST00000373114.4,ENST00000373119.4	chrX	86872934:86873131:86877210:86877423:86880609:86880796,	86877211	86877423	86877231	86877231	Frame_Shift_Del	A	-	p.I315fs
LIHC	TCGA-DD-A39Y-01	CENPI	ENST00000423383.1,ENST00000372927.1,ENST00000218507.5	chrX	100387380:100387445:100395654:100395749:100400052:100400188,	100395655	100395749	100395738	100395738	Frame_Shift_Del	A	-	p.T518fs
LIHC	TCGA-DD-A39Y-01	TMSB15B	ENST00000567181.1	chrX	103217247:103217296:103219078:103219195:103227463:103229570,	103219079	103219195	103219169	103219169	Frame_Shift_Del	A	-	p.E25fs
LIHC	TCGA-DD-A39Y-01	NRK	ENST00000243300.9,ENST00000428173.2	chrX	105187932:105188033:105189863:105190007:105190306:105190456,	105189864	105190007	105189999	105189999	Frame_Shift_Del	A	-	p.K1400fs
LIHC	TCGA-DD-A39Y-01	TBC1D8B	ENST00000357242.5,ENST00000276175.3	chrX	106112714:106112771:106113945:106114043:106116799:106117347,	106113946	106114043	106114002	106114002	Frame_Shift_Del	A	-	p.K977fs
LIHC	TCGA-DD-A39Y-01	NUP62CL	ENST00000421752.1,ENST00000484614.1	chrX	106410878:106411014:106418318:106418423:106449502:106449663,	106418319	106418423	106418348	106418348	Frame_Shift_Del	A	-	p.L10fs
LIHC	TCGA-DD-A39Y-01	COL4A5	ENST00000328300.6,ENST00000361603.2	chrX	107816803:107816884:107819139:107819202:107821181:107821217,	107819140	107819202	107819196	107819196	Frame_Shift_Del	T	-	p.G201fs
LIHC	TCGA-DD-A39Y-01	COL4A5	ENST00000328300.6,ENST00000361603.2	chrX	107930711:107930924:107935977:107936155:107938036:107938151,	107935978	107936155	107936118	107936118	Frame_Shift_Del	C	-	p.P1557fs
LIHC	TCGA-DD-A39Y-01	PAK3	ENST00000372010.1,ENST00000262836.4	chrX	110385370:110385424:110389748:110389793:110390964:110391118,	110389749	110389793	110389779	110389779	Frame_Shift_Del	G	-	p.G103fs
LIHC	TCGA-DD-A39Y-01	PAK3	ENST00000446737.1,ENST00000519681.1,ENST00000518291.1,ENST00000360648.4,ENST00000372010.1,ENST00000372007.5,ENST00000425146.1,ENST00000417227.1,ENST00000262836.4	chrX	110406789:110406955:110416245:110416309:110435354:110435403,	110416246	110416309	110416294	110416294	Frame_Shift_Del	A	-	p.E293fs
LIHC	TCGA-DD-A39Y-01	ALG13	ENST00000394780.3,ENST00000251943.4,ENST00000495283.1	chrX	110928198:110928331:110951254:110951621:110952192:110952257,	110951255	110951621	110951444	110951444	Frame_Shift_Del	T	-	p.A191fs
LIHC	TCGA-DD-A39Y-01	ALG13	ENST00000394780.3,ENST00000470971.1,ENST00000251943.4,ENST00000436609.1	chrX	110970559:110970673:110970841:110970998:110971412:110971533,	110970842	110970998	110970889	110970889	Frame_Shift_Del	C	-	p.S713fs
LIHC	TCGA-DD-A39Y-01	ALG13	ENST00000394780.3,ENST00000486578.1,ENST00000470971.1,ENST00000251943.4,ENST00000436609.1,ENST00000460092.1	chrX	110970903:110970998:110971412:110971533:110973622:110973655,	110971413	110971533	110971419	110971419	Frame_Shift_Del	G	-	p.G753fs
LIHC	TCGA-DD-A39Y-01	LUZP4	ENST00000371920.3	chrX	114536556:114536688:114537864:114537983:114540769:114542119,	114537865	114537983	114537909	114537909	Frame_Shift_Del	A	-	p.K91fs
LIHC	TCGA-DD-A39Y-01	DOCK11	ENST00000276202.7,ENST00000276204.6	chrX	117775152:117775268:117777419:117777557:117782907:117783090,	117777420	117777557	117777459	117777459	Frame_Shift_Del	A	-	p.K1435fs
LIHC	TCGA-DD-A39Y-01	DOCK11	ENST00000276202.7,ENST00000276204.6	chrX	117775152:117775268:117777419:117777557:117782907:117783090,	117777420	117777557	117777485	117777485	Frame_Shift_Del	T	-	p.A1442fs
LIHC	TCGA-DD-A39Y-01	UBE2A	ENST00000371558.2	chrX	118709337:118709363:118715469:118715559:118716550:118716639,	118715470	118715559	118715555	118715555	Frame_Shift_Del	A	-	p.P4fs
LIHC	TCGA-DD-A39Y-01	GRIA3	ENST00000371251.1,ENST00000264357.5	chrX	122598715:122598963:122599524:122599639:122613913:122614028,122598715:122598963:122599524:122599639:122616649:122616897,	122599525	122599639	122599563	122599563	Frame_Shift_Del	A	-	p.Q788fs
LIHC	TCGA-DD-A39Y-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123164810:123164975:123171376:123171473:123176418:123176495,	123171377	123171473	123171470	123171470	Frame_Shift_Del	A	-	p.K128fs
LIHC	TCGA-DD-A39Y-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123211806:123211908:123215229:123215378:123217270:123217399,	123215230	123215378	123215328	123215328	Frame_Shift_Del	T	-	p.T958fs
LIHC	TCGA-DD-A39Y-01	SMARCA1	ENST00000478420.1,ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128642031:128642073:128645780:128645960:128649663:128649764,	128645781	128645960	128645824	128645824	Frame_Shift_Del	G	-	p.P256fs
LIHC	TCGA-DD-A39Y-01	ZNF280C	ENST00000370978.4	chrX	129354322:129354454:129360732:129360879:129361655:129361756,	129360733	129360879	129360760	129360760	Frame_Shift_Del	G	-	p.P456fs
LIHC	TCGA-DD-A39Y-01	ZNF280C	ENST00000370978.4	chrX	129354322:129354454:129361655:129361756:129362950:129363108,129360732:129360879:129361655:129361756:129362950:129363108,	129361656	129361756	129361708	129361708	Frame_Shift_Del	A	-	p.L399fs
LIHC	TCGA-DD-A39Y-01	RBMX2	ENST00000305536.6,ENST00000469953.1	chrX	129536228:129536344:129537775:129537827:129543230:129543360,	129537776	129537827	129537778	129537778	Frame_Shift_Del	G	-	p.G42fs
LIHC	TCGA-DD-A39Y-01	RBMX2	ENST00000305536.6,ENST00000469953.1	chrX	129537775:129537827:129543230:129543360:129545321:129545498,	129543231	129543360	129543335	129543335	Frame_Shift_Del	C	-	p.A93fs
LIHC	TCGA-DD-A39Y-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2,ENST00000471746.1	chrX	138850418:138850593:138856848:138857112:138864705:138864792,	138856849	138857112	138856955	138856955	Frame_Shift_Del	T	-	p.T704fs
LIHC	TCGA-DD-A39Y-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138867384:138867458:138869331:138869403:138870350:138870502,	138869332	138869403	138869386	138869386	Frame_Shift_Del	A	-	p.L513fs
LIHC	TCGA-DD-A39Y-01	PASD1	ENST00000464219.1,ENST00000370357.4	chrX	150769998:150770053:150773117:150773206:150780135:150780225,	150773118	150773206	150773168	150773168	Frame_Shift_Del	T	-	p.F27fs
LIHC	TCGA-DD-A39Y-01	HAUS7	ENST00000370210.1,ENST00000490453.1,ENST00000370211.4,ENST00000464993.1,ENST00000370212.3	chrX	152728067:152728129:152730445:152730513:152734603:152734719,	152730446	152730513	152730466	152730466	Frame_Shift_Del	G	-	p.P101fs
LIHC	TCGA-DD-A39Y-01	PNCK	ENST00000370142.1,ENST00000466074.1,ENST00000472324.1,ENST00000393831.2,ENST00000447676.2,ENST00000340888.3,ENST00000370145.4	chrX	152935187:152935581:152935904:152936049:152936198:152936269,152935474:152935585:152935904:152936049:152936198:152936269,	152935905	152936049	152935967	152935967	Frame_Shift_Del	C	-	p.G349fs
LIHC	TCGA-DD-A39Y-01	PNCK	ENST00000488994.1,ENST00000411968.1,ENST00000370142.1,ENST00000422811.1,ENST00000393831.2,ENST00000433470.1,ENST00000447676.2,ENST00000370150.1,ENST00000340888.3,ENST00000439087.1,ENST00000370145.4,ENST00000489536.1,ENST00000466638.1	chrX	152937007:152937127:152937334:152937473:152937580:152937655,	152937335	152937473	152937410	152937410	Frame_Shift_Del	G	-	p.A113fs
LIHC	TCGA-DD-A39Y-01	SLC6A8	ENST00000442457.1,ENST00000430077.2,ENST00000253122.5	chrX	152959410:152959472:152959584:152959722:152959798:152959875,	152959585	152959722	152959650	152959650	Frame_Shift_Del	T	-	p.R440fs
LIHC	TCGA-DD-A39Y-01	PLXNB3	ENST00000538966.1	chrX	153030956:153031035:153031613:153031779:153032327:153033368,	153031614	153031779	153031731	153031731	Frame_Shift_Del	C	-	p.F22fs
LIHC	TCGA-DD-A39Y-01	PLXNB3	ENST00000538282.1	chrX	153030956:153031035:153033703:153033883:153034402:153034531,153030956:153031035:153033703:153033883:153034616:153034717,	153033704	153033883	153033817	153033817	Frame_Shift_Del	G	-	p.V423fs
LIHC	TCGA-DD-A39Y-01	PLXNB3	ENST00000538282.1,ENST00000361971.5,ENST00000538776.1,ENST00000538966.1	chrX	153036764:153036858:153036940:153037110:153037318:153037470,	153036941	153037110	153037068	153037068	Frame_Shift_Del	G	-	p.P848fs
LIHC	TCGA-DD-A39Y-01	ARHGAP4	ENST00000393721.1,ENST00000350060.5,ENST00000494302.1,ENST00000537206.1,ENST00000370028.3,ENST00000370016.1,ENST00000420383.1,ENST00000470209.1,ENST00000404127.2	chrX	153176582:153176643:153178153:153178256:153178477:153178505,	153178154	153178256	153178176	153178176	Frame_Shift_Del	C	-	p.G547fs
LIHC	TCGA-DD-A39Y-01	ARHGAP4	ENST00000393721.1,ENST00000350060.5,ENST00000537206.1,ENST00000370028.3,ENST00000370016.1,ENST00000420383.1,ENST00000404127.2	chrX	153178477:153178505:153178671:153178756:153178862:153178970,	153178672	153178756	153178747	153178747	Frame_Shift_Del	C	-	p.E486fs
LIHC	TCGA-DD-A39Y-01	RENBP	ENST00000442361.1,ENST00000412763.1	chrX	153205554:153205686:153206930:153207106:153208306:153208486,	153206931	153207106	153207006	153207006	Frame_Shift_Del	G	-	p.P290fs
LIHC	TCGA-DD-A39Y-01	HCFC1	ENST00000354233.3,ENST00000444191.1,ENST00000310441.7,ENST00000369984.4	chrX	153215693:153215994:153216263:153216449:153216800:153216938,	153216264	153216449	153216272	153216272	Frame_Shift_Del	T	-	p.I1899fs
LIHC	TCGA-DD-A39Y-01	HCFC1	ENST00000354233.3,ENST00000310441.7,ENST00000369984.4	chrX	153219516:153220993:153221641:153221862:153222075:153222214,	153221642	153221862	153221802	153221802	Frame_Shift_Del	C	-	p.G899fs
LIHC	TCGA-DD-A39Y-01	HCFC1	ENST00000354233.3,ENST00000310441.7,ENST00000369984.4	chrX	153221641:153221862:153222075:153222214:153222368:153222511,	153222076	153222214	153222153	153222153	Frame_Shift_Del	C	-	p.G853fs
LIHC	TCGA-DD-A39Y-01	HCFC1	ENST00000354233.3,ENST00000310441.7,ENST00000369984.4	chrX	153223475:153223700:153224019:153224217:153224781:153224921,	153224020	153224217	153224141	153224141	Frame_Shift_Del	G	-	p.P561fs
LIHC	TCGA-DD-A39Y-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153588135:153588273:153588357:153588955:153589675:153589938,	153588358	153588955	153588557	153588557	Frame_Shift_Del	C	-	p.G1202fs
LIHC	TCGA-DD-A39Y-01	TAZ	ENST00000476679.1,ENST00000299328.5,ENST00000426231.1,ENST00000351413.4	chrX	153641865:153641904:153642437:153642527:153647881:153647962,	153642438	153642527	153642446	153642446	Frame_Shift_Del	T	-	p.F128fs
LIHC	TCGA-DD-A39Y-01	TAZ	ENST00000476679.1,ENST00000299328.5,ENST00000426231.1,ENST00000351413.4	chrX	153641865:153641904:153642437:153642527:153647881:153647962,	153642438	153642527	153642511	153642511	Frame_Shift_Del	A	-	p.G148fs
LIHC	TCGA-DD-A39Y-01	TAZ	ENST00000369776.4	chrX	153647884:153647962:153648370:153648603:153648996:153649023,	153648371	153648603	153648405	153648405	Frame_Shift_Del	C	-	p.N206fs
LIHC	TCGA-DD-A39Y-01	PLXNA3	ENST00000369682.3	chrX	153694965:153695136:153695399:153695493:153695574:153695814,	153695400	153695493	153695456	153695456	Frame_Shift_Del	G	-	p.R1055fs
LIHC	TCGA-DD-A39Y-01	FUNDC2	ENST00000484175.1,ENST00000475165.1,ENST00000369498.3	chrX	154261700:154261828:154274783:154274859:154279944:154280007,	154274784	154274859	154274845	154274845	Frame_Shift_Del	T	-	p.F117fs
LIHC	TCGA-DD-A39Y-01	VAMP7	ENST00000479687.1	chrX	155111040:155111111:155119120:155119296:155125285:155125343,	155119121	155119296	155119140	155119140	Frame_Shift_Del	T	-	p.L4fs
LIHC	TCGA-DD-A39Y-01	VAMP7	ENST00000460621.1	chrX	155111040:155111111:155119120:155119210:155127775:155127913,	155119121	155119210	155119140	155119140	Frame_Shift_Del	T	-	p.L4fs
LIHC	TCGA-DD-A39Y-01	VAMP7	ENST00000488344.1	chrX	155111040:155111111:155119120:155119275:155125285:155125343,155111040:155111111:155119120:155119275:155127775:155127913,	155119121	155119275	155119140	155119140	Frame_Shift_Del	T	-	p.L4fs
LIHC	TCGA-DD-A39Y-01	ZFY	ENST00000383052.1	chrY	2803545:2803810:2821949:2822038:2829114:2829327,2803321:2803487:2821949:2822038:2829114:2829327,	2821950	2822038	2822023	2822023	Frame_Shift_Del	T	-	p.F17fs
LIHC	TCGA-DD-A39Y-01	USP9Y	ENST00000426564.2,ENST00000338981.3	chrY	14928058:14928279:14930354:14930545:14945613:14945787,	14930355	14930545	14930529	14930529	Frame_Shift_Del	T	-	p.F1669fs
LIHC	TCGA-DD-A39Y-01	UTY	ENST00000538878.1,ENST00000331397.4,ENST00000382896.4,ENST00000540140.1,ENST00000362096.4,ENST00000545955.1,ENST00000329134.5	chrY	15438100:15438230:15447442:15448215:15466882:15467278,	15447443	15448215	15447565	15447565	Frame_Shift_Del	C	-	p.G807fs
LIHC	TCGA-DD-A39Y-01	UTY	ENST00000545955.1	chrY	15469756:15469849:15470967:15471102:15471646:15471866,15470343:15470433:15470967:15471102:15471646:15471866,	15470968	15471102	15471013	15471013	Frame_Shift_Del	G	-	p.P425fs
LIHC	TCGA-DD-A39Z-01	RIMS2	ENST00000262231.10	chr8	104897525:104898451:104922548:104922757:104924280:104924400,	104922549	104922757	104922585	104922585	Frame_Shift_Del	A	-	p.Q362fs
LIHC	TCGA-DD-A3A0-01	NOC2L	ENST00000327044.6,ENST00000477976.1	chr1	883869:883983:886506:886618:887379:887519,	886507	886618	886529	886529	Frame_Shift_Del	G	-	p.P474fs
LIHC	TCGA-DD-A3A0-01	NOC2L	ENST00000327044.6,ENST00000477976.1	chr1	883869:883983:886506:886618:887379:887519,	886507	886618	886592	886592	Frame_Shift_Del	G	-	p.P453fs
LIHC	TCGA-DD-A3A0-01	SCNN1D	ENST00000400928.3,ENST00000325425.8,ENST00000379101.4,ENST00000379099.3,ENST00000379116.5,ENST00000338555.2	chr1	1223318:1223417:1225650:1225768:1225856:1225935,	1225651	1225768	1225728	1225728	Frame_Shift_Del	G	-	p.A416fs
LIHC	TCGA-DD-A3A0-01	PUSL1	ENST00000379031.5	chr1	1246013:1246068:1246288:1246451:1246709:1247056,	1246289	1246451	1246327	1246327	Frame_Shift_Del	G	-	p.L246fs
LIHC	TCGA-DD-A3A0-01	ATAD3B	ENST00000308647.7,ENST00000472194.2	chr1	1417924:1417994:1420395:1420551:1421161:1421218,	1420396	1420551	1420423	1420423	Frame_Shift_Del	G	-	p.G260fs
LIHC	TCGA-DD-A3A0-01	ATAD3A	ENST00000378756.3,ENST00000536055.1,ENST00000339113.4	chr1	1451391:1451468:1452690:1452792:1453095:1453155,	1452691	1452792	1452718	1452718	Frame_Shift_Del	A	-	p.K152fs
LIHC	TCGA-DD-A3A0-01	GNB1	ENST00000439272.2	chr1	1737913:1737977:1747194:1747301:1749275:1749314,1737913:1737977:1747194:1747301:1756835:1756938,	1747195	1747301	1747239	1747239	Frame_Shift_Del	C	-	p.G53fs
LIHC	TCGA-DD-A3A0-01	MORN1	ENST00000449373.1,ENST00000378525.2,ENST00000378529.3,ENST00000378531.3,ENST00000606372.1	chr1	2316416:2316504:2317245:2317336:2318857:2318968,	2317246	2317336	2317264	2317264	Frame_Shift_Del	G	-	p.P144fs
LIHC	TCGA-DD-A3A0-01	PANK4	ENST00000505228.1,ENST00000435556.3,ENST00000378466.3,ENST00000486396.1	chr1	2450642:2450763:2451239:2451393:2451760:2451853,	2451240	2451393	2451274	2451274	Frame_Shift_Del	G	-	p.A273fs
LIHC	TCGA-DD-A3A0-01	TNFRSF14	ENST00000463471.2,ENST00000435221.2,ENST00000434817.1,ENST00000426449.1,ENST00000482074.2,ENST00000496064.1,ENST00000451778.1,ENST00000409119.1,ENST00000355716.4,ENST00000442392.2	chr1	2488023:2488172:2489164:2489273:2489781:2489907,	2489165	2489273	2489202	2489202	Frame_Shift_Del	C	-	p.A36fs
LIHC	TCGA-DD-A3A0-01	PRDM16	ENST00000270722.5,ENST00000378391.2,ENST00000514189.1,ENST00000441472.2,ENST00000442529.2,ENST00000378398.3	chr1	2985774:2985860:3102688:3103038:3160650:3160701,	3102689	3103038	3102721	3102721	Frame_Shift_Del	C	-	p.P24fs
LIHC	TCGA-DD-A3A0-01	TP73	ENST00000604566.1,ENST00000378280.1	chr1	3645890:3646012:3647490:3647629:3649310:3649643,3645890:3646012:3647490:3647629:3648026:3648120,	3647491	3647629	3647598	3647598	Frame_Shift_Del	C	-	p.P486fs
LIHC	TCGA-DD-A3A0-01	SMIM1	ENST00000444870.2	chr1	3689626:3689745:3691862:3692047:3692358:3692546,	3691863	3692047	3691944	3691944	Frame_Shift_Del	C	-	p.P3fs
LIHC	TCGA-DD-A3A0-01	AJAP1	ENST00000378191.4	chr1	4715104:4715514:4771959:4772759:4829912:4830000,	4771960	4772759	4771981	4771981	Frame_Shift_Del	G	-	p.P17fs
LIHC	TCGA-DD-A3A0-01	NPHP4	ENST00000378169.3,ENST00000489180.2,ENST00000378156.4,ENST00000478423.2	chr1	5927799:5927956:5933311:5933395:5934530:5934717,	5933312	5933395	5933327	5933327	Frame_Shift_Del	G	-	p.P1100fs
LIHC	TCGA-DD-A3A0-01	NPHP4	ENST00000378169.3,ENST00000489180.2,ENST00000378156.4	chr1	6038329:6038473:6046214:6046387:6052303:6052484,	6046215	6046387	6046301	6046301	Frame_Shift_Del	G	-	p.H17fs
LIHC	TCGA-DD-A3A0-01	RNF207	ENST00000377948.2,ENST00000377939.4	chr1	6266595:6266786:6267438:6267571:6268940:6269085,	6267439	6267571	6267457	6267457	Frame_Shift_Del	G	-	p.K70fs
LIHC	TCGA-DD-A3A0-01	RNF207	ENST00000492476.1,ENST00000377939.4	chr1	6271094:6271178:6271926:6272113:6272290:6272476,	6271927	6272113	6271996	6271996	Frame_Shift_Del	G	-	p.S393fs
LIHC	TCGA-DD-A3A0-01	GPR153	ENST00000377893.2	chr1	6310615:6310684:6311397:6311590:6313777:6314207,	6311398	6311590	6311428	6311428	Frame_Shift_Del	G	-	p.L317fs
LIHC	TCGA-DD-A3A0-01	GPR153	ENST00000377893.2	chr1	6311397:6311590:6313777:6314207:6314609:6315074,	6313778	6314207	6313833	6313833	Frame_Shift_Del	C	-	p.G244fs
LIHC	TCGA-DD-A3A0-01	GPR153	ENST00000377893.2	chr1	6311397:6311590:6313777:6314207:6314609:6315074,	6313778	6314207	6314166	6314166	Frame_Shift_Del	C	-	p.G133fs
LIHC	TCGA-DD-A3A0-01	NOL9	ENST00000377705.5	chr1	6604885:6604982:6605104:6605240:6609630:6609758,	6605105	6605240	6605171	6605171	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A3A0-01	TAS1R1	ENST00000333172.6	chr1	6631000:6631275:6634690:6635452:6636474:6636687,	6634691	6635452	6634759	6634759	Frame_Shift_Del	C	-	p.I189fs
LIHC	TCGA-DD-A3A0-01	CAMTA1	ENST00000467404.2	chr1	6845611:6845635:6885151:6885270:6931816:6931900,6867047:6867148:6885151:6885270:6931816:6931900,	6885152	6885270	6885183	6885183	Frame_Shift_Del	A	-	p.V49fs
LIHC	TCGA-DD-A3A0-01	CAMTA1	ENST00000467404.2	chr1	6845611:6845635:6885151:6885270:6931816:6931900,6867047:6867148:6885151:6885270:6931816:6931900,	6885152	6885270	6885190	6885190	Frame_Shift_Del	T	-	p.F52fs
LIHC	TCGA-DD-A3A0-01	PER3	ENST00000361923.2,ENST00000377532.3	chr1	7880174:7880299:7880526:7880700:7886539:7886770,	7880527	7880700	7880671	7880671	Frame_Shift_Del	C	-	p.T643fs
LIHC	TCGA-DD-A3A0-01	SLC2A5	ENST00000486632.1,ENST00000484798.1,ENST00000487835.1,ENST00000377424.4,ENST00000377414.3,ENST00000474145.1,ENST00000479813.1	chr1	9101916:9101996:9107668:9107793:9117506:9117667,	9107669	9107793	9107686	9107686	Frame_Shift_Del	A	-	p.L134fs
LIHC	TCGA-DD-A3A0-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10209241:10209340:10211383:10211619:10218413:10218540,	10211384	10211619	10211539	10211539	Frame_Shift_Del	C	-	p.T704fs
LIHC	TCGA-DD-A3A0-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10209241:10209340:10211383:10211619:10218413:10218540,	10211384	10211619	10211547	10211547	Frame_Shift_Del	T	-	p.F708fs
LIHC	TCGA-DD-A3A0-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10425157:10425303:10425466:10425706:10428524:10428560,	10425467	10425706	10425669	10425669	Frame_Shift_Del	A	-	p.E1572fs
LIHC	TCGA-DD-A3A0-01	PEX14	ENST00000356607.4,ENST00000491661.2	chr1	10555330:10555378:10596269:10596354:10659294:10659423,	10596270	10596354	10596351	10596351	Frame_Shift_Del	A	-	p.K56fs
LIHC	TCGA-DD-A3A0-01	CASZ1	ENST00000377022.3,ENST00000344008.5	chr1	10710748:10710812:10710997:10711133:10713433:10714275,	10710998	10711133	10711047	10711047	Frame_Shift_Del	G	-	p.H923fs
LIHC	TCGA-DD-A3A0-01	TNFRSF1B	ENST00000376259.3,ENST00000492361.1	chr1	12254640:12254675:12262023:12262228:12266796:12269285,	12262024	12262228	12262049	12262049	Frame_Shift_Del	G	-	p.R309fs
LIHC	TCGA-DD-A3A0-01	VPS13D	ENST00000356315.4	chr1	12290123:12290177:12294247:12294420:12302569:12302647,	12294248	12294420	12294368	12294368	Frame_Shift_Del	A	-	p.G15fs
LIHC	TCGA-DD-A3A0-01	VPS13D	ENST00000356315.4,ENST00000358136.3	chr1	12309279:12309396:12313778:12313883:12316389:12316560,	12313779	12313883	12313821	12313821	Frame_Shift_Del	T	-	p.F203fs
LIHC	TCGA-DD-A3A0-01	VPS13D	ENST00000356315.4,ENST00000358136.3	chr1	12327901:12327977:12328762:12328933:12331050:12331181,	12328763	12328933	12328784	12328784	Frame_Shift_Del	T	-	p.V608fs
LIHC	TCGA-DD-A3A0-01	VPS13D	ENST00000356315.4,ENST00000496628.1,ENST00000543766.1,ENST00000011700.6,ENST00000358136.3	chr1	12475139:12475274:12476712:12476880:12516053:12516127,	12476713	12476880	12476727	12476727	Frame_Shift_Del	G	-	p.Q4060fs
LIHC	TCGA-DD-A3A0-01	PRDM2	ENST00000484063.2	chr1	14057512:14057612:14059273:14059350:14068499:14068652,	14059274	14059350	14059336	14059336	Frame_Shift_Del	A	-	p.K65fs
LIHC	TCGA-DD-A3A0-01	PRDM2	ENST00000376048.5,ENST00000235372.7,ENST00000311066.5	chr1	14057512:14057612:14059273:14059377:14068499:14068652,	14059274	14059377	14059336	14059336	Frame_Shift_Del	A	-	p.K65fs
LIHC	TCGA-DD-A3A0-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14105319	14105319	Frame_Shift_Del	C	-	p.I343fs
LIHC	TCGA-DD-A3A0-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14106270	14106270	Frame_Shift_Del	C	-	p.V660fs
LIHC	TCGA-DD-A3A0-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14106327	14106327	Frame_Shift_Del	C	-	p.F679fs
LIHC	TCGA-DD-A3A0-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107841	14107841	Frame_Shift_Del	T	-	p.L1184fs
LIHC	TCGA-DD-A3A0-01	CASP9	ENST00000474305.2,ENST00000400777.3,ENST00000546424.1,ENST00000375890.4,ENST00000333868.5	chr1	15820386:15820496:15821767:15821947:15831105:15831253,	15821768	15821947	15821790	15821790	Frame_Shift_Del	A	-	p.F342fs
LIHC	TCGA-DD-A3A0-01	CASP9	ENST00000474305.2,ENST00000400777.3,ENST00000546424.1,ENST00000447522.1,ENST00000375890.4,ENST00000424908.1,ENST00000333868.5	chr1	15831119:15831253:15832484:15832574:15833393:15833547,	15832485	15832574	15832571	15832571	Frame_Shift_Del	T	-	p.M212fs
LIHC	TCGA-DD-A3A0-01	PLEKHM2	ENST00000375799.3,ENST00000375793.2,ENST00000477849.1	chr1	16058844:16059024:16059106:16059223:16060291:16060610,	16059107	16059223	16059136	16059136	Frame_Shift_Del	C	-	p.L945fs
LIHC	TCGA-DD-A3A0-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16095022:16095125:16096903:16097073:16101112:16101126,	16096904	16097073	16096934	16096934	Frame_Shift_Del	C	-	p.S191fs
LIHC	TCGA-DD-A3A0-01	FBLIM1	ENST00000400773.1,ENST00000332305.5,ENST00000375771.1,ENST00000375766.3	chr1	16101112:16101291:16103664:16103782:16111042:16111180,	16103665	16103782	16103763	16103763	Frame_Shift_Del	A	-	p.E330fs
LIHC	TCGA-DD-A3A0-01	SPEN	ENST00000442985.1,ENST00000375759.3	chr1	16235818:16235976:16237595:16237796:16242622:16242774,	16237596	16237796	16237617	16237617	Frame_Shift_Del	T	-	p.L355fs
LIHC	TCGA-DD-A3A0-01	HSPB7	ENST00000311890.9,ENST00000375718.4	chr1	16341993:16342254:16343568:16343702:16344259:16344320,	16343569	16343702	16343688	16343688	Frame_Shift_Del	C	-	p.A72fs
LIHC	TCGA-DD-A3A0-01	HSPB7	ENST00000406363.2	chr1	16341993:16342254:16343568:16343714:16344259:16344320,	16343569	16343714	16343688	16343688	Frame_Shift_Del	C	-	p.A72fs
LIHC	TCGA-DD-A3A0-01	HSPB7	ENST00000487046.1	chr1	16341993:16342254:16343568:16343717:16344259:16344320,	16343569	16343717	16343688	16343688	Frame_Shift_Del	C	-	p.A72fs
LIHC	TCGA-DD-A3A0-01	HSPB7	ENST00000463576.1	chr1	16341993:16342254:16343583:16343717:16344259:16344320,	16343584	16343717	16343688	16343688	Frame_Shift_Del	C	-	p.A72fs
LIHC	TCGA-DD-A3A0-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16376309:16376411:16377010:16377095:16377369:16377543,	16377011	16377095	16377043	16377043	Frame_Shift_Del	T	-	p.V334fs
LIHC	TCGA-DD-A3A0-01	FAM131C	ENST00000375662.4,ENST00000494078.1	chr1	16385988:16386099:16386363:16386546:16388593:16388687,	16386364	16386546	16386447	16386447	Frame_Shift_Del	G	-	p.P123fs
LIHC	TCGA-DD-A3A0-01	ARHGEF19	ENST00000270747.3	chr1	16534438:16534720:16535137:16535578:16538996:16539104,	16535138	16535578	16535271	16535271	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-DD-A3A0-01	ARHGEF19	ENST00000270747.3	chr1	16534438:16534720:16535137:16535578:16538996:16539104,	16535138	16535578	16535395	16535395	Frame_Shift_Del	G	-	p.P52fs
LIHC	TCGA-DD-A3A0-01	ARHGEF19	ENST00000270747.3	chr1	16534438:16534720:16535137:16535578:16538996:16539104,	16535138	16535578	16535398	16535398	Frame_Shift_Del	A	-	p.F51fs
LIHC	TCGA-DD-A3A0-01	SZRD1	ENST00000475554.1,ENST00000472351.1,ENST00000401088.4	chr1	16693759:16693803:16719722:16719977:16721532:16721565,16717869:16717919:16719722:16719977:16721532:16721565,	16719723	16719977	16719843	16719843	Frame_Shift_Del	C	-	p.S74fs
LIHC	TCGA-DD-A3A0-01	SZRD1	ENST00000375590.3,ENST00000492354.1	chr1	16717869:16717919:16719725:16719977:16721532:16721565,16693759:16693803:16719725:16719977:16721532:16721565,	16719726	16719977	16719843	16719843	Frame_Shift_Del	C	-	p.S74fs
LIHC	TCGA-DD-A3A0-01	SPATA21	ENST00000466212.1	chr1	16737272:16737410:16748405:16748689:16752018:16752226,	16748406	16748689	16748411	16748411	Frame_Shift_Del	T	-	p.K30fs
LIHC	TCGA-DD-A3A0-01	CROCC	ENST00000375541.5,ENST00000445545.2,ENST00000467938.1	chr1	17256923:17257089:17257785:17257892:17263131:17263368,	17257786	17257892	17257848	17257848	Frame_Shift_Del	G	-	p.V304fs
LIHC	TCGA-DD-A3A0-01	ATP13A2	ENST00000326735.8,ENST00000452699.1	chr1	17312475:17312853:17312957:17313127:17313299:17313370,	17312958	17313127	17312998	17312998	Frame_Shift_Del	C	-	p.G1117fs
LIHC	TCGA-DD-A3A0-01	ATP13A2	ENST00000326735.8,ENST00000452699.1	chr1	17312475:17312853:17312957:17313127:17313299:17313370,	17312958	17313127	17313051	17313051	Frame_Shift_Del	C	-	p.G1099fs
LIHC	TCGA-DD-A3A0-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1	chr1	17318980:17319076:17320123:17320330:17322470:17322659,	17320124	17320330	17320157	17320157	Frame_Shift_Del	G	-	p.P567fs
LIHC	TCGA-DD-A3A0-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1	chr1	17318980:17319076:17320123:17320330:17322470:17322659,	17320124	17320330	17320291	17320291	Frame_Shift_Del	C	-	p.V524fs
LIHC	TCGA-DD-A3A0-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1	chr1	17320123:17320330:17322470:17322659:17322748:17322778,	17322471	17322659	17322499	17322499	Frame_Shift_Del	C	-	p.G500fs
LIHC	TCGA-DD-A3A0-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1,ENST00000510069.1	chr1	17326894:17327002:17328528:17328598:17328790:17328868,17326894:17327029:17328528:17328598:17328790:17328868,	17328529	17328598	17328546	17328546	Frame_Shift_Del	G	-	p.Q225fs
LIHC	TCGA-DD-A3A0-01	PADI1	ENST00000375471.4	chr1	17548784:17548965:17550115:17550188:17550861:17550923,	17550116	17550188	17550131	17550131	Frame_Shift_Del	T	-	p.F97fs
LIHC	TCGA-DD-A3A0-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17752036:17752180:17755601:17755695:17764725:17765018,	17755602	17755695	17755654	17755654	Frame_Shift_Del	A	-	p.F109fs
LIHC	TCGA-DD-A3A0-01	ARHGEF10L	ENST00000361221.3,ENST00000434513.1	chr1	17934296:17934472:17939552:17939669:17942588:17942697,	17939553	17939669	17939625	17939625	Frame_Shift_Del	G	-	p.G229fs
LIHC	TCGA-DD-A3A0-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000434513.1,ENST00000475356.1,ENST00000167825.4,ENST00000452522.1	chr1	17975048:17975170:17981130:17981217:17982373:17982597,	17981131	17981217	17981164	17981164	Frame_Shift_Del	C	-	p.P810fs
LIHC	TCGA-DD-A3A0-01	PAX7	ENST00000420770.2	chr1	19029587:19029790:19062125:19062372:19071307:19075360,	19062126	19062372	19062159	19062159	Frame_Shift_Del	C	-	p.P398fs
LIHC	TCGA-DD-A3A0-01	UBR4	ENST00000375226.2,ENST00000375254.3,ENST00000375267.2,ENST00000375217.2,ENST00000494503.1	chr1	19433330:19433460:19436589:19436717:19436873:19436958,	19436590	19436717	19436608	19436608	Frame_Shift_Del	G	-	p.P4029fs
LIHC	TCGA-DD-A3A0-01	UBR4	ENST00000425413.1,ENST00000375254.3,ENST00000375267.2,ENST00000375217.2	chr1	19475056:19475120:19477070:19477287:19478136:19478194,	19477071	19477287	19477100	19477100	Frame_Shift_Del	G	-	p.P2467fs
LIHC	TCGA-DD-A3A0-01	EMC1	ENST00000375199.3,ENST00000477853.1,ENST00000375208.3,ENST00000494770.1	chr1	19547257:19547342:19549117:19549328:19549889:19550000,	19549118	19549328	19549220	19549220	Frame_Shift_Del	G	-	p.Q829fs
LIHC	TCGA-DD-A3A0-01	HP1BP3	ENST00000491748.1,ENST00000375003.2,ENST00000488722.1,ENST00000312239.5	chr1	21072084:21072149:21074036:21074148:21076215:21076240,	21074037	21074148	21074076	21074076	Frame_Shift_Del	A	-	p.F253fs
LIHC	TCGA-DD-A3A0-01	HP1BP3	ENST00000424732.1,ENST00000375003.2,ENST00000312239.5,ENST00000438032.1	chr1	21083691:21083749:21091869:21092024:21094076:21094157,	21091870	21092024	21091903	21091903	Frame_Shift_Del	G	-	p.S134fs
LIHC	TCGA-DD-A3A0-01	HP1BP3	ENST00000424732.1,ENST00000375003.2,ENST00000312239.5,ENST00000438032.1	chr1	21091869:21092024:21094076:21094157:21097422:21097554,	21094077	21094157	21094103	21094103	Frame_Shift_Del	T	-	p.T85fs
LIHC	TCGA-DD-A3A0-01	EIF4G3	ENST00000544689.1	chr1	21231375:21231464:21267751:21267888:21267983:21268111,	21267752	21267888	21267776	21267776	Frame_Shift_Del	A	-	p.S34fs
LIHC	TCGA-DD-A3A0-01	EIF4G3	ENST00000544689.1	chr1	21231375:21231464:21267751:21267888:21267983:21268111,	21267752	21267888	21267852	21267852	Frame_Shift_Del	A	-	p.F8fs
LIHC	TCGA-DD-A3A0-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268462	21268462	Frame_Shift_Del	G	-	p.P345fs
LIHC	TCGA-DD-A3A0-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21563238:21563337:21564626:21564737:21571481:21571596,	21564627	21564737	21564641	21564641	Frame_Shift_Del	C	-	p.D443fs
LIHC	TCGA-DD-A3A0-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21563238:21563337:21564626:21564737:21571481:21571596,	21564627	21564737	21564694	21564694	Frame_Shift_Del	T	-	p.N426fs
LIHC	TCGA-DD-A3A0-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000528294.1,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21571481:21571596:21573713:21573856:21582439:21582598,	21573714	21573856	21573824	21573824	Frame_Shift_Del	A	-	p.F335fs
LIHC	TCGA-DD-A3A0-01	RAP1GAP	ENST00000374763.2	chr1	21929296:21929406:21930150:21930405:21932558:21932690,	21930151	21930405	21930312	21930312	Frame_Shift_Del	C	-	p.A509fs
LIHC	TCGA-DD-A3A0-01	USP48	ENST00000529637.1,ENST00000464577.1,ENST00000308271.9	chr1	22016466:22016592:22021558:22021714:22027990:22028095,	22021559	22021714	22021622	22021622	Frame_Shift_Del	T	-	p.K940fs
LIHC	TCGA-DD-A3A0-01	USP48	ENST00000529637.1	chr1	22032959:22033082:22033236:22033400:22041881:22041950,	22033237	22033400	22033370	22033370	Frame_Shift_Del	A	-	p.L664fs
LIHC	TCGA-DD-A3A0-01	HSPG2	ENST00000486901.1,ENST00000374695.3	chr1	22150108:22150212:22150613:22150697:22150798:22150866,	22150614	22150697	22150678	22150678	Frame_Shift_Del	C	-	p.E4279fs
LIHC	TCGA-DD-A3A0-01	HSPG2	ENST00000374695.3	chr1	22158144:22158289:22158987:22159099:22159760:22159815,	22158988	22159099	22159003	22159003	Frame_Shift_Del	C	-	p.G3731fs
LIHC	TCGA-DD-A3A0-01	HSPG2	ENST00000493940.2,ENST00000374695.3	chr1	22179456:22179563:22180685:22180836:22181103:22181149,	22180686	22180836	22180754	22180754	Frame_Shift_Del	C	-	p.G2124fs
LIHC	TCGA-DD-A3A0-01	HSPG2	ENST00000374695.3	chr1	22192209:22192302:22198678:22198870:22199112:22199253,	22198679	22198870	22198759	22198759	Frame_Shift_Del	G	-	p.Q1381fs
LIHC	TCGA-DD-A3A0-01	KDM1A	ENST00000494920.1,ENST00000356634.3,ENST00000542151.1,ENST00000400181.4	chr1	23406045:23406160:23407938:23408066:23408712:23408859,	23407939	23408066	23408041	23408041	Frame_Shift_Del	T	-	p.I758fs
LIHC	TCGA-DD-A3A0-01	GRHL3	ENST00000342072.4,ENST00000236255.4,ENST00000361548.4,ENST00000356046.2,ENST00000350501.5,ENST00000528064.1	chr1	24661134:24661196:24662971:24663317:24663567:24663641,	24662972	24663317	24663009	24663009	Frame_Shift_Del	C	-	p.P102fs
LIHC	TCGA-DD-A3A0-01	NIPAL3	ENST00000339255.2,ENST00000374399.4,ENST00000003912.3	chr1	24779897:24779994:24782627:24782763:24785377:24785466,	24782628	24782763	24782707	24782707	Frame_Shift_Del	C	-	p.Y157fs
LIHC	TCGA-DD-A3A0-01	RCAN3	ENST00000436717.2	chr1	24829386:24829640:24840803:24841057:24857707:24857881,	24840804	24841057	24841008	24841008	Frame_Shift_Del	T	-	p.L49fs
LIHC	TCGA-DD-A3A0-01	RUNX3	ENST00000308873.6,ENST00000399916.1,ENST00000496967.1,ENST00000338888.3,ENST00000540420.1	chr1	25229062:25229157:25233749:25233908:25245730:25245835,	25233750	25233908	25233807	25233807	Frame_Shift_Del	G	-	p.R230fs
LIHC	TCGA-DD-A3A0-01	SYF2	ENST00000236273.4	chr1	25554608:25554726:25555488:25555614:25558594:25558702,	25555489	25555614	25555531	25555531	Frame_Shift_Del	T	-	p.K72fs
LIHC	TCGA-DD-A3A0-01	TMEM50A	ENST00000374358.4,ENST00000498135.1,ENST00000491936.1	chr1	25678116:25678184:25683283:25683344:25687150:25687458,25679372:25679465:25683283:25683344:25687150:25687458,	25683284	25683344	25683316	25683316	Frame_Shift_Del	T	-	p.F135fs
LIHC	TCGA-DD-A3A0-01	RHCE	ENST00000527187.1,ENST00000243186.6,ENST00000349438.4,ENST00000374352.2,ENST00000294413.7,ENST00000413854.1,ENST00000349320.3	chr1	25715466:25715604:25717239:25717406:25718484:25718632,	25717240	25717406	25717257	25717257	Frame_Shift_Del	G	-	p.Q246fs
LIHC	TCGA-DD-A3A0-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104704	26104704	Frame_Shift_Del	G	-	p.G457fs
LIHC	TCGA-DD-A3A0-01	EXTL1	ENST00000374280.3	chr1	26357622:26357755:26357950:26358057:26358886:26358976,	26357951	26358057	26357995	26357995	Frame_Shift_Del	C	-	p.P428fs
LIHC	TCGA-DD-A3A0-01	SLC30A2	ENST00000374278.3	chr1	26369039:26369199:26369888:26370042:26370788:26370935,26369039:26369199:26369888:26370042:26371487:26371708,	26369889	26370042	26369933	26369933	Frame_Shift_Del	C	-	p.G127fs
LIHC	TCGA-DD-A3A0-01	SLC30A2	ENST00000374278.3	chr1	26369039:26369199:26369888:26370042:26370788:26370935,26369039:26369199:26369888:26370042:26371487:26371708,	26369889	26370042	26369992	26369992	Frame_Shift_Del	C	-	p.V108fs
LIHC	TCGA-DD-A3A0-01	PDIK1L	ENST00000374269.1	chr1	26438339:26438406:26440782:26441084:26448327:26448615,	26440783	26441084	26440911	26440911	Frame_Shift_Del	A	-	p.K38fs
LIHC	TCGA-DD-A3A0-01	CNKSR1	ENST00000482227.1,ENST00000361530.6,ENST00000531191.1,ENST00000528001.1,ENST00000374253.5	chr1	26510561:26510632:26510704:26510778:26510891:26510900,	26510705	26510778	26510747	26510747	Frame_Shift_Del	C	-	p.N65fs
LIHC	TCGA-DD-A3A0-01	CNKSR1	ENST00000482227.1,ENST00000528281.1,ENST00000361530.6,ENST00000531191.1,ENST00000374253.5	chr1	26511504:26511677:26513658:26513732:26513901:26513973,	26513659	26513732	26513703	26513703	Frame_Shift_Del	G	-	p.L193fs
LIHC	TCGA-DD-A3A0-01	CEP85	ENST00000453146.1,ENST00000451429.2,ENST00000252992.4,ENST00000476272.2	chr1	26584633:26584751:26586107:26586293:26594973:26595126,	26586108	26586293	26586121	26586121	Frame_Shift_Del	A	-	p.E390fs
LIHC	TCGA-DD-A3A0-01	ZNF683	ENST00000349618.3,ENST00000374204.1,ENST00000403843.1,ENST00000436292.1	chr1	26689516:26689645:26691022:26691717:26694083:26694138,	26691023	26691717	26691515	26691515	Frame_Shift_Del	G	-	p.P174fs
LIHC	TCGA-DD-A3A0-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101438	27101438	Frame_Shift_Del	C	-	p.P1576fs
LIHC	TCGA-DD-A3A0-01	SLC9A1	ENST00000374089.1,ENST00000545949.1,ENST00000263980.3,ENST00000447808.1	chr1	27428506:27428621:27428875:27429049:27429163:27429234,	27428876	27429049	27428982	27428982	Frame_Shift_Del	G	-	p.Q572fs
LIHC	TCGA-DD-A3A0-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440641	27440641	Frame_Shift_Del	G	-	p.L163fs
LIHC	TCGA-DD-A3A0-01	MAP3K6	ENST00000493901.1,ENST00000357582.2,ENST00000470890.1,ENST00000374040.3	chr1	27681881:27681960:27682159:27682236:27682516:27682570,	27682160	27682236	27682167	27682167	Frame_Shift_Del	G	-	p.R1261fs
LIHC	TCGA-DD-A3A0-01	MAP3K6	ENST00000472410.1,ENST00000493901.1,ENST00000357582.2,ENST00000374040.3	chr1	27684201:27684367:27684671:27684810:27684909:27685102,	27684672	27684810	27684804	27684804	Frame_Shift_Del	G	-	p.P928fs
LIHC	TCGA-DD-A3A0-01	MAP3K6	ENST00000472410.1,ENST00000493901.1,ENST00000357582.2,ENST00000374040.3	chr1	27688010:27688118:27688195:27688358:27688581:27688741,	27688196	27688358	27688293	27688293	Frame_Shift_Del	G	-	p.P494fs
LIHC	TCGA-DD-A3A0-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27874005	27874005	Frame_Shift_Del	G	-	p.P1541fs
LIHC	TCGA-DD-A3A0-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27875492	27875492	Frame_Shift_Del	G	-	p.P1045fs
LIHC	TCGA-DD-A3A0-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876340	27876340	Frame_Shift_Del	C	-	p.E763fs
LIHC	TCGA-DD-A3A0-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876447	27876447	Frame_Shift_Del	C	-	p.G727fs
LIHC	TCGA-DD-A3A0-01	FGR	ENST00000374005.3,ENST00000374004.1,ENST00000399173.1,ENST00000545953.1,ENST00000374003.3,ENST00000457296.1	chr1	27948163:27948168:27949552:27949655:27950201:27950440,	27949553	27949655	27949641	27949641	Frame_Shift_Del	G	-	p.L81fs
LIHC	TCGA-DD-A3A0-01	FAM76A	ENST00000373954.6,ENST00000010299.6,ENST00000373949.1,ENST00000530324.1,ENST00000234549.7	chr1	28059113:28059168:28060541:28060694:28071164:28071322,	28060542	28060694	28060615	28060615	Frame_Shift_Del	A	-	p.E92fs
LIHC	TCGA-DD-A3A0-01	STX12	ENST00000373943.4,ENST00000440806.2,ENST00000468761.1	chr1	28116072:28116142:28120043:28120143:28128188:28128326,	28120044	28120143	28120117	28120117	Frame_Shift_Del	C	-	p.P88fs
LIHC	TCGA-DD-A3A0-01	RPA2	ENST00000313433.7,ENST00000444045.1,ENST00000373909.3,ENST00000373912.3	chr1	28223515:28223632:28224143:28224218:28233438:28233552,	28224144	28224218	28224187	28224187	Frame_Shift_Del	G	-	p.P122fs
LIHC	TCGA-DD-A3A0-01	RPA2	ENST00000373909.3	chr1	28233691:28233793:28240573:28240680:28241137:28241257,	28240574	28240680	28240614	28240614	Frame_Shift_Del	C	-	p.G26fs
LIHC	TCGA-DD-A3A0-01	SMPDL3B	ENST00000549094.1,ENST00000373888.4	chr1	28261620:28261755:28271742:28271956:28275575:28275673,	28271743	28271956	28271857	28271857	Frame_Shift_Del	G	-	p.W59fs
LIHC	TCGA-DD-A3A0-01	SMPDL3B	ENST00000549094.1,ENST00000373894.3,ENST00000548116.1,ENST00000373888.4	chr1	28280864:28281037:28282194:28282375:28282459:28282593,	28282195	28282375	28282216	28282216	Frame_Shift_Del	C	-	p.P239fs
LIHC	TCGA-DD-A3A0-01	DNAJC8	ENST00000489277.1,ENST00000263697.4	chr1	28530257:28530333:28531768:28531860:28534852:28534924,	28531769	28531860	28531809	28531809	Frame_Shift_Del	T	-	p.I175fs
LIHC	TCGA-DD-A3A0-01	DNAJC8	ENST00000489277.1,ENST00000263697.4	chr1	28534852:28534924:28536482:28536577:28537081:28537148,	28536483	28536577	28536501	28536501	Frame_Shift_Del	T	-	p.K127fs
LIHC	TCGA-DD-A3A0-01	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785673	28785673	Frame_Shift_Del	A	-	p.K32fs
LIHC	TCGA-DD-A3A0-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800596	28800596	Frame_Shift_Del	T	-	p.F452fs
LIHC	TCGA-DD-A3A0-01	PHACTR4	ENST00000373836.3,ENST00000373839.3	chr1	28815681:28815737:28817462:28817524:28818161:28818299,	28817463	28817524	28817465	28817465	Frame_Shift_Del	A	-	p.K607fs
LIHC	TCGA-DD-A3A0-01	RCC1	ENST00000486790.2,ENST00000411533.1	chr1	28856374:28856451:28857034:28857085:28858314:28858330,	28857035	28857085	28857041	28857041	Frame_Shift_Del	G	-	p.R27fs
LIHC	TCGA-DD-A3A0-01	RCC1	ENST00000373831.3	chr1	28856374:28856451:28857034:28857127:28858314:28858330,	28857035	28857127	28857041	28857041	Frame_Shift_Del	G	-	p.R27fs
LIHC	TCGA-DD-A3A0-01	RCC1	ENST00000373833.6,ENST00000429051.1,ENST00000430407.1,ENST00000427469.1,ENST00000398958.2,ENST00000419074.1,ENST00000373831.3,ENST00000411533.1,ENST00000373832.1	chr1	28858446:28858502:28858682:28858862:28861561:28861658,	28858683	28858862	28858849	28858849	Frame_Shift_Del	G	-	p.W143fs
LIHC	TCGA-DD-A3A0-01	TAF12	ENST00000373824.4	chr1	28944464:28944542:28948425:28948677:28969503:28969578,	28948426	28948677	28948463	28948463	Frame_Shift_Del	G	-	p.P44fs
LIHC	TCGA-DD-A3A0-01	GMEB1	ENST00000373816.1,ENST00000480454.1,ENST00000294409.2,ENST00000361872.4	chr1	29019453:29019557:29023438:29023596:29028949:29029081,	29023439	29023596	29023581	29023581	Frame_Shift_Del	C	-	p.P195fs
LIHC	TCGA-DD-A3A0-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000347529.3,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29362337:29362435:29365765:29365938:29379615:29379824,	29365766	29365938	29365885	29365885	Frame_Shift_Del	C	-	p.A528fs
LIHC	TCGA-DD-A3A0-01	SRSF4	ENST00000466448.1	chr1	29476614:29476704:29481207:29481422:29485885:29485998,29475528:29475738:29481207:29481422:29485885:29485998,	29481208	29481422	29481356	29481356	Frame_Shift_Del	C	-	p.V144fs
LIHC	TCGA-DD-A3A0-01	PTPRU	ENST00000323874.8,ENST00000460170.2,ENST00000345512.3,ENST00000373779.3,ENST00000428026.2,ENST00000356870.3	chr1	29585772:29585854:29585960:29586076:29586381:29586556,	29585961	29586076	29586051	29586051	Frame_Shift_Del	C	-	p.A217fs
LIHC	TCGA-DD-A3A0-01	PUM1	ENST00000257075.5,ENST00000373741.4,ENST00000440538.2,ENST00000480602.1,ENST00000426105.2,ENST00000525843.1,ENST00000373747.3,ENST00000525948.1	chr1	31468028:31468067:31478699:31478878:31479840:31479946,	31478700	31478878	31478731	31478731	Frame_Shift_Del	G	-	p.P230fs
LIHC	TCGA-DD-A3A0-01	PUM1	ENST00000524516.1,ENST00000257075.5,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3	chr1	31501642:31501711:31532050:31532424:31538462:31538523,	31532051	31532424	31532130	31532130	Frame_Shift_Del	C	-	p.G97fs
LIHC	TCGA-DD-A3A0-01	ZCCHC17	ENST00000479629.1,ENST00000546109.1	chr1	31769893:31769943:31782890:31783011:31791955:31792013,31769854:31770060:31782890:31783011:31791955:31792013,31769882:31769922:31782890:31783011:31791013:31791083,	31782891	31783011	31782974	31782974	Frame_Shift_Del	A	-	p.E10fs
LIHC	TCGA-DD-A3A0-01	COL16A1	ENST00000271069.6,ENST00000470799.1,ENST00000373672.3,ENST00000488128.2,ENST00000466829.1,ENST00000488897.1,ENST00000440437.1,ENST00000482910.1	chr1	32126188:32126239:32126666:32126720:32127014:32127059,	32126667	32126720	32126706	32126706	Frame_Shift_Del	T	-	p.K1262fs
LIHC	TCGA-DD-A3A0-01	COL16A1	ENST00000271069.6,ENST00000373668.3,ENST00000373672.3	chr1	32148934:32148970:32149307:32149349:32149550:32149604,	32149308	32149349	32149310	32149310	Frame_Shift_Del	G	-	p.Q793fs
LIHC	TCGA-DD-A3A0-01	COL16A1	ENST00000271069.6,ENST00000373668.3,ENST00000373672.3	chr1	32162820:32162901:32163506:32163773:32164083:32164207,	32163507	32163773	32163752	32163752	Frame_Shift_Del	G	-	p.Q138fs
LIHC	TCGA-DD-A3A0-01	SPOCD1	ENST00000533231.1,ENST00000360482.2,ENST00000528791.1,ENST00000257100.3	chr1	32265616:32265742:32266041:32266218:32267264:32267303,	32266042	32266218	32266074	32266074	Frame_Shift_Del	T	-	p.R524fs
LIHC	TCGA-DD-A3A0-01	KHDRBS1	ENST00000484270.2,ENST00000307714.8,ENST00000327300.7	chr1	32495898:32496023:32497124:32497241:32498788:32498935,	32497125	32497241	32497211	32497211	Frame_Shift_Del	G	-	p.L198fs
LIHC	TCGA-DD-A3A0-01	KPNA6	ENST00000471599.1	chr1	32573658:32573735:32620188:32620322:32622453:32622528,	32620189	32620322	32620206	32620206	Frame_Shift_Del	G	-	p.G8fs
LIHC	TCGA-DD-A3A0-01	KPNA6	ENST00000373625.3,ENST00000537234.1,ENST00000545542.1,ENST00000471599.1	chr1	32631705:32631831:32632769:32632897:32635482:32635661,	32632770	32632897	32632882	32632882	Frame_Shift_Del	C	-	p.T410fs
LIHC	TCGA-DD-A3A0-01	TXLNA	ENST00000373609.1,ENST00000373610.3	chr1	32650125:32650217:32653554:32653725:32655655:32655850,	32653555	32653725	32653600	32653600	Frame_Shift_Del	A	-	p.K216fs
LIHC	TCGA-DD-A3A0-01	DCDC2B	ENST00000409358.1	chr1	32677361:32677438:32677670:32677802:32678090:32678237,	32677671	32677802	32677684	32677684	Frame_Shift_Del	G	-	p.G137fs
LIHC	TCGA-DD-A3A0-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33235721	33235721	Frame_Shift_Del	C	-	p.A314fs
LIHC	TCGA-DD-A3A0-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236297	33236297	Frame_Shift_Del	C	-	p.S506fs
LIHC	TCGA-DD-A3A0-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236735	33236735	Frame_Shift_Del	C	-	p.T652fs
LIHC	TCGA-DD-A3A0-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236980	33236980	Frame_Shift_Del	C	-	p.P735fs
LIHC	TCGA-DD-A3A0-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237067	33237067	Frame_Shift_Del	C	-	p.P763fs
LIHC	TCGA-DD-A3A0-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237345	33237345	Frame_Shift_Del	C	-	p.L855fs
LIHC	TCGA-DD-A3A0-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237689	33237689	Frame_Shift_Del	C	-	p.A970fs
LIHC	TCGA-DD-A3A0-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237893	33237893	Frame_Shift_Del	C	-	p.S1038fs
LIHC	TCGA-DD-A3A0-01	RNF19B	ENST00000235150.4,ENST00000356990.5,ENST00000373456.7	chr1	33403997:33404129:33407852:33408060:33409619:33409760,	33407853	33408060	33407901	33407901	Frame_Shift_Del	C	-	p.G521fs
LIHC	TCGA-DD-A3A0-01	ZNF362	ENST00000373428.5,ENST00000539719.1	chr1	33741948:33742195:33745724:33746058:33747187:33747412,	33745725	33746058	33745933	33745933	Frame_Shift_Del	C	-	p.G186fs
LIHC	TCGA-DD-A3A0-01	ZNF362	ENST00000373428.5,ENST00000539719.1	chr1	33741948:33742195:33745724:33746058:33747187:33747412,	33745725	33746058	33745981	33745981	Frame_Shift_Del	G	-	p.P202fs
LIHC	TCGA-DD-A3A0-01	PHC2	ENST00000485928.1,ENST00000467894.1	chr1	33797875:33798005:33799785:33799893:33815197:33815251,	33799786	33799893	33799792	33799792	Frame_Shift_Del	G	-	p.Q553fs
LIHC	TCGA-DD-A3A0-01	PHC2	ENST00000486897.1	chr1	33797875:33798005:33799785:33799891:33815197:33815251,	33799786	33799891	33799792	33799792	Frame_Shift_Del	G	-	p.Q553fs
LIHC	TCGA-DD-A3A0-01	PHC2	ENST00000257118.5,ENST00000419414.2,ENST00000431992.1,ENST00000373422.3,ENST00000373416.1	chr1	33797875:33798005:33799690:33799893:33815197:33815251,33797875:33798005:33799690:33799893:33820001:33820167,	33799691	33799893	33799792	33799792	Frame_Shift_Del	G	-	p.Q553fs
LIHC	TCGA-DD-A3A0-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485084	35485084	Frame_Shift_Del	A	-	p.Y100fs
LIHC	TCGA-DD-A3A0-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485090	35485090	Frame_Shift_Del	T	-	p.M98fs
LIHC	TCGA-DD-A3A0-01	ZMYM1	ENST00000359858.4,ENST00000417119.1,ENST00000476269.1,ENST00000373330.1,ENST00000488455.1	chr1	35544991:35545043:35561419:35561492:35562917:35563079,35559514:35559610:35561419:35561492:35562917:35563079,35559514:35559684:35561419:35561492:35562917:35563079,	35561420	35561492	35561465	35561465	Frame_Shift_Del	A	-	p.K48fs
LIHC	TCGA-DD-A3A0-01	SFPQ	ENST00000357214.5,ENST00000470472.1	chr1	35654603:35654688:35654786:35654983:35656098:35656175,	35654787	35654983	35654893	35654893	Frame_Shift_Del	T	-	p.K502fs
LIHC	TCGA-DD-A3A0-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2	chr1	35908506:35908629:35909761:35909904:35913773:35913800,	35909762	35909904	35909886	35909886	Frame_Shift_Del	A	-	p.F844fs
LIHC	TCGA-DD-A3A0-01	KIAA0319L	ENST00000325722.3,ENST00000426982.2,ENST00000440579.1,ENST00000470388.1	chr1	35932210:35932296:35936463:35936561:35940405:35940507,	35936464	35936561	35936497	35936497	Frame_Shift_Del	T	-	p.E360fs
LIHC	TCGA-DD-A3A0-01	KIAA0319L	ENST00000431916.1	chr1	35940469:35940507:35944566:35944813:36019950:36020120,35940469:35940507:35944566:35944813:35972212:35972468,35936463:35936561:35944566:35944813:35972212:35972468,	35944567	35944813	35944748	35944748	Frame_Shift_Del	C	-	p.G244fs
LIHC	TCGA-DD-A3A0-01	NCDN	ENST00000373253.3,ENST00000423723.1,ENST00000356090.4,ENST00000373243.2	chr1	36028068:36028234:36028802:36029027:36029367:36029510,	36028803	36029027	36028922	36028922	Frame_Shift_Del	C	-	p.S502fs
LIHC	TCGA-DD-A3A0-01	AGO4	ENST00000373210.3	chr1	36292348:36292436:36297027:36297175:36297412:36297532,	36297028	36297175	36297115	36297115	Frame_Shift_Del	C	-	p.Y312fs
LIHC	TCGA-DD-A3A0-01	COL8A2	ENST00000397799.1	chr1	36563107:36565088:36565650:36565859:36581308:36581353,	36565651	36565859	36565686	36565686	Frame_Shift_Del	C	-	p.G53fs
LIHC	TCGA-DD-A3A0-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752026	36752026	Frame_Shift_Del	A	-	p.P65fs
LIHC	TCGA-DD-A3A0-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36766486:36766685:36767153:36767297:36769396:36769749,	36767154	36767297	36767274	36767274	Frame_Shift_Del	C	-	p.P875fs
LIHC	TCGA-DD-A3A0-01	SH3D21	ENST00000312808.4,ENST00000373139.2,ENST00000505871.1,ENST00000453908.2,ENST00000480549.1	chr1	36772767:36772886:36773117:36773208:36773370:36773426,	36773118	36773208	36773138	36773138	Frame_Shift_Del	G	-	p.L122fs
LIHC	TCGA-DD-A3A0-01	SH3D21	ENST00000312808.4,ENST00000373139.2,ENST00000505871.1,ENST00000453908.2,ENST00000426732.2	chr1	36773518:36773564:36773709:36773810:36773989:36774076,	36773710	36773810	36773739	36773739	Frame_Shift_Del	T	-	p.F190fs
LIHC	TCGA-DD-A3A0-01	CSF3R	ENST00000373104.1,ENST00000484762.1,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4,ENST00000464465.2	chr1	36932221:36932428:36932830:36932912:36933158:36933252,	36932831	36932912	36932899	36932899	Frame_Shift_Del	G	-	p.L658fs
LIHC	TCGA-DD-A3A0-01	GRIK3	ENST00000373091.3,ENST00000373093.4	chr1	37335348:37335402:37337788:37337970:37346234:37346492,	37337789	37337970	37337803	37337803	Frame_Shift_Del	G	-	p.Q240fs
LIHC	TCGA-DD-A3A0-01	GNL2	ENST00000373062.3	chr1	38049467:38049534:38052911:38053096:38056306:38056446,	38052912	38053096	38053061	38053061	Frame_Shift_Del	A	-	p.F140fs
LIHC	TCGA-DD-A3A0-01	RSPO1	ENST00000373059.1,ENST00000401068.1,ENST00000401069.1,ENST00000356545.2	chr1	38077483:38078593:38079375:38079564:38079855:38080005,	38079376	38079564	38079530	38079530	Frame_Shift_Del	C	-	p.G157fs
LIHC	TCGA-DD-A3A0-01	RSPO1	ENST00000401070.1,ENST00000401069.1,ENST00000401071.2	chr1	38082155:38082347:38095239:38095621:38097958:38098025,	38095240	38095621	38095252	38095252	Frame_Shift_Del	T	-	p.R28fs
LIHC	TCGA-DD-A3A0-01	CDCA8	ENST00000327331.2,ENST00000373055.1	chr1	38167425:38167490:38168923:38169019:38171112:38171239,	38168924	38169019	38168991	38168991	Frame_Shift_Del	C	-	p.P186fs
LIHC	TCGA-DD-A3A0-01	EPHA10	ENST00000373048.4,ENST00000540011.1,ENST00000427468.2,ENST00000330210.7,ENST00000446149.2,ENST00000437645.1,ENST00000534097.1	chr1	38185580:38185730:38186022:38186226:38186454:38186516,	38186023	38186226	38186215	38186215	Frame_Shift_Del	C	-	p.G740fs
LIHC	TCGA-DD-A3A0-01	EPHA10	ENST00000373048.4,ENST00000540011.1,ENST00000427468.2,ENST00000330210.7,ENST00000446149.2,ENST00000437645.1,ENST00000534097.1	chr1	38188982:38189044:38192773:38192882:38197082:38197166,	38192774	38192882	38192820	38192820	Frame_Shift_Del	G	-	p.L577fs
LIHC	TCGA-DD-A3A0-01	EPHA10	ENST00000373048.4,ENST00000540011.1,ENST00000427468.2,ENST00000437645.1	chr1	38197082:38197254:38200928:38201062:38218547:38218578,	38200929	38201062	38201018	38201018	Frame_Shift_Del	G	-	p.Q468fs
LIHC	TCGA-DD-A3A0-01	INPP5B	ENST00000373026.1,ENST00000373023.2,ENST00000373027.1,ENST00000373024.3	chr1	38328011:38328102:38329983:38330095:38331432:38331560,	38329984	38330095	38330037	38330037	Frame_Shift_Del	A	-	p.L938fs
LIHC	TCGA-DD-A3A0-01	SF3A3	ENST00000460925.1,ENST00000448721.2,ENST00000373019.4	chr1	38435242:38435407:38442555:38442625:38444391:38444499,	38442556	38442625	38442595	38442595	Frame_Shift_Del	A	-	p.F322fs
LIHC	TCGA-DD-A3A0-01	SF3A3	ENST00000448721.2,ENST00000470585.1,ENST00000461869.1	chr1	38453455:38453508:38455219:38455267:38455541:38455645,38450378:38450451:38455219:38455267:38455541:38455645,	38455220	38455267	38455231	38455231	Frame_Shift_Del	C	-	p.A45fs
LIHC	TCGA-DD-A3A0-01	FHL3	ENST00000475084.1	chr1	38463016:38463231:38463355:38463542:38464645:38464820,	38463356	38463542	38463405	38463405	Frame_Shift_Del	A	-	p.F213fs
LIHC	TCGA-DD-A3A0-01	RHBDL2	ENST00000372990.1,ENST00000372985.3,ENST00000538156.1,ENST00000289248.2	chr1	39358835:39358896:39361640:39361741:39376993:39377106,	39361641	39361741	39361656	39361656	Frame_Shift_Del	A	-	p.F198fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39797807	39797807	Frame_Shift_Del	G	-	p.M1849fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798447	39798447	Frame_Shift_Del	A	-	p.K2064fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799171	39799171	Frame_Shift_Del	A	-	p.Q2304fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800244	39800244	Frame_Shift_Del	A	-	p.K2662fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39801848	39801848	Frame_Shift_Del	A	-	p.S3196fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39827031:39827349:39833819:39833986:39835701:39835858,	39833820	39833986	39833948	39833948	Frame_Shift_Del	A	-	p.R4300fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000289893.4,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000564288.1	chr1	39893212:39893286:39893632:39893959:39894913:39894998,	39893633	39893959	39893921	39893921	Frame_Shift_Del	A	-	p.K5589fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000360115.4,ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39920580:39920769:39924041:39924162:39924757:39924921,	39924042	39924162	39924108	39924108	Frame_Shift_Del	A	-	p.K7048fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000422234.2,ENST00000567887.1,ENST00000564288.1	chr1	39934314:39934404:39935218:39935287:39945469:39945552,	39935219	39935287	39935236	39935236	Frame_Shift_Del	A	-	p.K7303fs
LIHC	TCGA-DD-A3A0-01	MACF1	ENST00000442046.1,ENST00000446276.1,ENST00000567887.1,ENST00000564288.1	chr1	39945469:39945681:39950272:39950402:39951209:39952652,39946591:39946702:39950272:39950402:39951209:39952652,	39950273	39950402	39950317	39950317	Frame_Shift_Del	T	-	p.T7442fs
LIHC	TCGA-DD-A3A0-01	PABPC4	ENST00000421687.2,ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000437136.1,ENST00000372862.3,ENST00000492468.1	chr1	40027399:40027459:40027744:40027875:40027994:40028052,	40027745	40027875	40027763	40027763	Frame_Shift_Del	G	-	p.P609fs
LIHC	TCGA-DD-A3A0-01	PABPC4	ENST00000470443.1	chr1	40035534:40035674:40036768:40037021:40038064:40038090,	40036769	40037021	40036983	40036983	Frame_Shift_Del	A	-	p.F142fs
LIHC	TCGA-DD-A3A0-01	PABPC4	ENST00000421687.2,ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000372862.3	chr1	40035534:40035674:40036905:40037021:40038064:40038090,	40036906	40037021	40036983	40036983	Frame_Shift_Del	A	-	p.F142fs
LIHC	TCGA-DD-A3A0-01	PPIE	ENST00000372830.1	chr1	40218581:40218724:40228188:40228323:40229360:40229586,	40228189	40228323	40228289	40228289	Frame_Shift_Del	C	-	p.T313fs
LIHC	TCGA-DD-A3A0-01	TRIT1	ENST00000495175.2,ENST00000441669.2,ENST00000316891.5,ENST00000492612.2,ENST00000545233.1	chr1	40310202:40310312:40312891:40312969:40348989:40349152,40310202:40310312:40312891:40312969:40313219:40313328,	40312892	40312969	40312897	40312897	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-DD-A3A0-01	TRIT1	ENST00000462797.1,ENST00000372818.1,ENST00000316891.5,ENST00000469476.2	chr1	40315794:40315933:40318402:40318548:40319641:40319740,	40318403	40318548	40318545	40318545	Frame_Shift_Del	G	-	p.Q140fs
LIHC	TCGA-DD-A3A0-01	MFSD2A	ENST00000491515.1	chr1	40432757:40432841:40433299:40433588:40434005:40434149,	40433300	40433588	40433311	40433311	Frame_Shift_Del	T	-	p.T354fs
LIHC	TCGA-DD-A3A0-01	MFSD2A	ENST00000480630.1	chr1	40432757:40432841:40433299:40433383:40433475:40433588,40432333:40432363:40433299:40433383:40433475:40433588,	40433300	40433383	40433311	40433311	Frame_Shift_Del	T	-	p.T354fs
LIHC	TCGA-DD-A3A0-01	ZMPSTE24	ENST00000372759.3	chr1	40747036:40747199:40751596:40751701:40756525:40756669,	40751597	40751701	40751681	40751681	Frame_Shift_Del	A	-	p.K347fs
LIHC	TCGA-DD-A3A0-01	COL9A2	ENST00000482722.1,ENST00000372748.3	chr1	40773117:40773171:40773374:40773428:40773863:40773917,	40773375	40773428	40773421	40773421	Frame_Shift_Del	G	-	p.P303fs
LIHC	TCGA-DD-A3A0-01	COL9A2	ENST00000461118.1	chr1	40781261:40781336:40782794:40782981:40783259:40783488,	40782795	40782981	40782839	40782839	Frame_Shift_Del	G	-	p.L12fs
LIHC	TCGA-DD-A3A0-01	SMAP2	ENST00000372718.3,ENST00000539317.1,ENST00000372708.1	chr1	40878687:40878774:40879830:40879912:40880943:40881041,	40879831	40879912	40879837	40879837	Frame_Shift_Del	A	-	p.K87fs
LIHC	TCGA-DD-A3A0-01	KCNQ4	ENST00000347132.5,ENST00000506017.1	chr1	41287985:41288074:41289768:41289930:41296755:41296976,	41289769	41289930	41289804	41289804	Frame_Shift_Del	C	-	p.A389fs
LIHC	TCGA-DD-A3A0-01	KCNQ4	ENST00000347132.5,ENST00000506017.1,ENST00000443478.3,ENST00000509682.2	chr1	41300638:41300770:41303336:41303466:41303982:41304195,	41303337	41303466	41303357	41303357	Frame_Shift_Del	G	-	p.R589fs
LIHC	TCGA-DD-A3A0-01	KCNQ4	ENST00000347132.5,ENST00000506017.1,ENST00000443478.3,ENST00000509682.2	chr1	41300638:41300770:41303336:41303466:41303982:41304195,	41303337	41303466	41303365	41303365	Frame_Shift_Del	G	-	p.G592fs
LIHC	TCGA-DD-A3A0-01	CTPS1	ENST00000543104.1,ENST00000541520.1,ENST00000372621.4,ENST00000480420.1,ENST00000372616.1	chr1	41456836:41456920:41457436:41457517:41461588:41461740,	41457437	41457517	41457462	41457462	Frame_Shift_Del	T	-	p.L222fs
LIHC	TCGA-DD-A3A0-01	SLFNL1	ENST00000359345.1,ENST00000372611.1,ENST00000302946.8,ENST00000439569.2	chr1	41481268:41481900:41482905:41483049:41483306:41483648,	41482906	41483049	41483023	41483023	Frame_Shift_Del	G	-	p.P328fs
LIHC	TCGA-DD-A3A0-01	SCMH1	ENST00000326197.7,ENST00000472037.1,ENST00000372595.1,ENST00000402904.2,ENST00000498793.1	chr1	41494313:41494398:41499654:41499720:41503033:41503124,	41499655	41499720	41499676	41499676	Frame_Shift_Del	A	-	p.W565fs
LIHC	TCGA-DD-A3A0-01	SCMH1	ENST00000326197.7,ENST00000372595.1,ENST00000402904.2,ENST00000361705.3,ENST00000397174.2,ENST00000397171.2,ENST00000361191.5,ENST00000372597.1,ENST00000372596.1,ENST00000337495.5	chr1	41536266:41536393:41540890:41541123:41608549:41608784,41536266:41536393:41540890:41541123:41578954:41579198,	41540891	41541123	41541049	41541049	Frame_Shift_Del	T	-	p.T264fs
LIHC	TCGA-DD-A3A0-01	SCMH1	ENST00000326197.7,ENST00000372595.1,ENST00000402904.2,ENST00000361705.3,ENST00000397174.2,ENST00000397171.2,ENST00000361191.5,ENST00000372597.1,ENST00000372596.1,ENST00000337495.5	chr1	41578954:41579198:41582593:41582682:41608549:41608784,	41582594	41582682	41582643	41582643	Frame_Shift_Del	A	-	p.L141fs
LIHC	TCGA-DD-A3A0-01	EDN2	ENST00000460255.1	chr1	41945124:41945173:41946765:41946864:41948136:41948255,41946371:41946546:41946765:41946864:41948136:41948259,	41946766	41946864	41946773	41946773	Frame_Shift_Del	T	-	p.R146fs
LIHC	TCGA-DD-A3A0-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42050097	42050097	Frame_Shift_Del	G	-	p.P124fs
LIHC	TCGA-DD-A3A0-01	CCDC30	ENST00000342022.4,ENST00000340612.4,ENST00000428554.2	chr1	43002243:43002272:43004843:43004981:43011080:43011250,	43004844	43004981	43004927	43004927	Frame_Shift_Del	T	-	p.H67fs
LIHC	TCGA-DD-A3A0-01	ZNF691	ENST00000372504.1	chr1	43315235:43315413:43316329:43316414:43316620:43317425,	43316330	43316414	43316404	43316404	Frame_Shift_Del	T	-	p.L16fs
LIHC	TCGA-DD-A3A0-01	EBNA1BP2	ENST00000472982.1,ENST00000461557.2,ENST00000491223.1,ENST00000236051.2,ENST00000431635.2	chr1	43637280:43637322:43637556:43637640:43637723:43637812,	43637557	43637640	43637622	43637622	Frame_Shift_Del	G	-	p.R84fs
LIHC	TCGA-DD-A3A0-01	EBNA1BP2	ENST00000472982.1,ENST00000461557.2,ENST00000491223.1,ENST00000236051.2,ENST00000431635.2	chr1	43637280:43637322:43637556:43637640:43637723:43637812,	43637557	43637640	43637625	43637625	Frame_Shift_Del	A	-	p.S83fs
LIHC	TCGA-DD-A3A0-01	TIE1	ENST00000433781.2	chr1	43773466:43773595:43774656:43774802:43775058:43775099,43773102:43773243:43774656:43774802:43775058:43775099,	43774657	43774802	43774664	43774664	Frame_Shift_Del	C	-	p.I350fs
LIHC	TCGA-DD-A3A0-01	TIE1	ENST00000473014.1	chr1	43779448:43779639:43782869:43783743:43784905:43785019,	43782870	43783743	43783001	43783001	Frame_Shift_Del	G	-	p.E847fs
LIHC	TCGA-DD-A3A0-01	TIE1	ENST00000433781.2,ENST00000372476.3	chr1	43779448:43779639:43782869:43783080:43783234:43783345,	43782870	43783080	43783001	43783001	Frame_Shift_Del	G	-	p.E847fs
LIHC	TCGA-DD-A3A0-01	MED8	ENST00000372455.4,ENST00000290663.6,ENST00000372457.4	chr1	43850716:43850777:43851648:43851897:43852259:43852341,	43851649	43851897	43851676	43851676	Frame_Shift_Del	C	-	p.V239fs
LIHC	TCGA-DD-A3A0-01	SZT2	ENST00000470139.1,ENST00000562955.1,ENST00000372442.1	chr1	43892385:43892480:43892726:43892850:43892951:43893116,	43892727	43892850	43892772	43892772	Frame_Shift_Del	C	-	p.P1063fs
LIHC	TCGA-DD-A3A0-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43909022:43909148:43909267:43909467:43911564:43911655,	43909268	43909467	43909448	43909448	Frame_Shift_Del	C	-	p.P2880fs
LIHC	TCGA-DD-A3A0-01	HYI	ENST00000372426.1,ENST00000372432.1,ENST00000583037.1,ENST00000372425.4,ENST00000470662.1,ENST00000372433.1,ENST00000372434.1,ENST00000372430.3,ENST00000487366.1,ENST00000486909.1,ENST00000372427.1	chr1	43917498:43917518:43917605:43917684:43917875:43917990,	43917606	43917684	43917633	43917633	Frame_Shift_Del	G	-	p.Q160fs
LIHC	TCGA-DD-A3A0-01	PTPRF	ENST00000372413.3,ENST00000372414.3,ENST00000438120.1,ENST00000359947.4	chr1	44054401:44054671:44056642:44057224:44057482:44057619,	44056643	44057224	44057205	44057205	Frame_Shift_Del	G	-	p.Q504fs
LIHC	TCGA-DD-A3A0-01	PTPRF	ENST00000372413.3,ENST00000496447.1,ENST00000372414.3,ENST00000438120.1,ENST00000359947.4,ENST00000422171.2,ENST00000414879.1	chr1	44069086:44069204:44069281:44069860:44070573:44070671,	44069282	44069860	44069475	44069475	Frame_Shift_Del	G	-	p.K884fs
LIHC	TCGA-DD-A3A0-01	KDM4A	ENST00000372396.3	chr1	44137175:44137546:44149354:44149475:44154584:44154766,	44149355	44149475	44149456	44149456	Frame_Shift_Del	G	-	p.Q612fs
LIHC	TCGA-DD-A3A0-01	ST3GAL3	ENST00000372375.2,ENST00000372372.2,ENST00000372368.2,ENST00000262915.3,ENST00000361746.4,ENST00000351035.3	chr1	44280562:44280605:44290402:44290564:44303890:44303918,	44290403	44290564	44290470	44290470	Frame_Shift_Del	A	-	p.K109fs
LIHC	TCGA-DD-A3A0-01	IPO13	ENST00000372343.3,ENST00000492152.1	chr1	44422481:44422648:44422866:44422987:44423073:44423221,	44422867	44422987	44422909	44422909	Frame_Shift_Del	G	-	p.L438fs
LIHC	TCGA-DD-A3A0-01	IPO13	ENST00000372343.3	chr1	44426837:44426934:44429940:44429993:44432246:44432313,	44429941	44429993	44429973	44429973	Frame_Shift_Del	T	-	p.F793fs
LIHC	TCGA-DD-A3A0-01	ATP6V0B	ENST00000472174.2,ENST00000498664.1,ENST00000471859.2,ENST00000236067.4,ENST00000473485.1	chr1	44442444:44442496:44442697:44442888:44443652:44443695,	44442698	44442888	44442819	44442819	Frame_Shift_Del	A	-	p.V174fs
LIHC	TCGA-DD-A3A0-01	ATP6V0B	ENST00000472174.2,ENST00000498664.1,ENST00000471859.2,ENST00000236067.4,ENST00000473485.1	chr1	44442444:44442496:44442697:44442888:44443652:44443695,	44442698	44442888	44442865	44442865	Frame_Shift_Del	G	-	p.G190fs
LIHC	TCGA-DD-A3A0-01	SLC6A9	ENST00000537678.1	chr1	44474268:44474295:44475636:44475768:44489919:44490034,	44475637	44475768	44475664	44475664	Frame_Shift_Del	C	-	p.V98fs
LIHC	TCGA-DD-A3A0-01	RPS8	ENST00000372209.3,ENST00000485390.1,ENST00000396651.3,ENST00000464658.1	chr1	45243285:45243461:45243671:45243801:45244247:45244411,	45243672	45243801	45243711	45243711	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-DD-A3A0-01	PLK3	ENST00000465443.1,ENST00000372201.4	chr1	45268626:45268825:45268939:45269063:45269271:45269293,	45268940	45269063	45268997	45268997	Frame_Shift_Del	C	-	p.P337fs
LIHC	TCGA-DD-A3A0-01	PLK3	ENST00000492398.1	chr1	45270010:45270173:45270937:45271051:45271158:45271272,	45270938	45271051	45270983	45270983	Frame_Shift_Del	C	-	p.P561fs
LIHC	TCGA-DD-A3A0-01	EIF2B3	ENST00000372183.3,ENST00000360403.2,ENST00000439363.1	chr1	45345489:45345680:45347283:45347411:45363026:45363116,	45347284	45347411	45347301	45347301	Frame_Shift_Del	T	-	p.K256fs
LIHC	TCGA-DD-A3A0-01	HECTD3	ENST00000372172.4	chr1	45473911:45473993:45474207:45474373:45474815:45474898,	45474208	45474373	45474317	45474317	Frame_Shift_Del	C	-	p.E377fs
LIHC	TCGA-DD-A3A0-01	PRDX1	ENST00000262746.1,ENST00000372079.1,ENST00000319248.8	chr1	45977004:45977086:45980178:45980309:45980544:45980567,	45980179	45980309	45980300	45980300	Frame_Shift_Del	A	-	p.F131fs
LIHC	TCGA-DD-A3A0-01	NASP	ENST00000350030.3,ENST00000437901.2,ENST00000464190.2,ENST00000534101.1,ENST00000351223.3	chr1	46056894:46056942:46067926:46068037:46072153:46072204,46056894:46056942:46067926:46068037:46070607:46070637,	46067927	46068037	46067987	46067987	Frame_Shift_Del	G	-	p.M56fs
LIHC	TCGA-DD-A3A0-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073002	46073002	Frame_Shift_Del	G	-	p.R140fs
LIHC	TCGA-DD-A3A0-01	PIK3R3	ENST00000354242.4,ENST00000372006.1,ENST00000425892.1,ENST00000420542.1,ENST00000423209.1	chr1	46543186:46543285:46546313:46546422:46597518:46597628,	46546314	46546422	46546324	46546324	Frame_Shift_Del	C	-	p.D69fs
LIHC	TCGA-DD-A3A0-01	RAD54L	ENST00000442598.1,ENST00000371975.4,ENST00000493985.1,ENST00000469835.1	chr1	46724357:46724418:46725635:46725771:46726213:46726283,	46725636	46725771	46725687	46725687	Frame_Shift_Del	C	-	p.A108fs
LIHC	TCGA-DD-A3A0-01	RAD54L	ENST00000442598.1,ENST00000371975.4,ENST00000493985.1,ENST00000469835.1	chr1	46724357:46724418:46725635:46725771:46726213:46726283,	46725636	46725771	46725705	46725705	Frame_Shift_Del	A	-	p.E114fs
LIHC	TCGA-DD-A3A0-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46751381	46751381	Frame_Shift_Del	G	-	p.P383fs
LIHC	TCGA-DD-A3A0-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46752129	46752129	Frame_Shift_Del	A	-	p.S134fs
LIHC	TCGA-DD-A3A0-01	FAAH	ENST00000468718.1,ENST00000493735.1	chr1	46860042:46860215:46867762:46867876:46870685:46870820,	46867763	46867876	46867799	46867799	Frame_Shift_Del	C	-	p.P78fs
LIHC	TCGA-DD-A3A0-01	EFCAB14	ENST00000371933.3	chr1	47173577:47173723:47181966:47182115:47183574:47184736,	47181967	47182115	47181994	47181994	Frame_Shift_Del	C	-	p.D103fs
LIHC	TCGA-DD-A3A0-01	CYP4B1	ENST00000371923.4,ENST00000526297.1,ENST00000271153.4,ENST00000464439.2,ENST00000468637.3,ENST00000452782.2	chr1	47264753:47264933:47278167:47278295:47279153:47279278,47276811:47276856:47278167:47278295:47279153:47279278,	47278168	47278295	47278190	47278190	Frame_Shift_Del	G	-	p.E130fs
LIHC	TCGA-DD-A3A0-01	STIL	ENST00000371877.3,ENST00000360380.3,ENST00000337817.5,ENST00000396221.2,ENST00000243182.6	chr1	47716293:47717594:47725960:47726211:47728574:47728734,	47725961	47726211	47726013	47726013	Frame_Shift_Del	T	-	p.I1009fs
LIHC	TCGA-DD-A3A0-01	SPATA6	ENST00000371843.3	chr1	48764319:48764565:48771458:48771550:48821341:48821441,48764319:48764565:48771458:48771550:48821389:48821441,	48771459	48771550	48771517	48771517	Frame_Shift_Del	C	-	p.E410fs
LIHC	TCGA-DD-A3A0-01	SPATA6	ENST00000487543.1,ENST00000371843.3,ENST00000396199.3,ENST00000463938.1,ENST00000371847.3	chr1	48865254:48865316:48869473:48869554:48877135:48877260,	48869474	48869554	48869530	48869530	Frame_Shift_Del	A	-	p.S144fs
LIHC	TCGA-DD-A3A0-01	SPATA6	ENST00000487543.1	chr1	48869473:48869554:48877135:48877276:48917223:48917272,	48877136	48877276	48877209	48877209	Frame_Shift_Del	G	-	p.P111fs
LIHC	TCGA-DD-A3A0-01	SPATA6	ENST00000396199.3	chr1	48869473:48869554:48877135:48877260:48917223:48917258,	48877136	48877260	48877209	48877209	Frame_Shift_Del	G	-	p.P111fs
LIHC	TCGA-DD-A3A0-01	FAF1	ENST00000487898.1,ENST00000396153.2,ENST00000371778.4	chr1	51204534:51204626:51210355:51210447:51253671:51253877,	51210356	51210447	51210386	51210386	Frame_Shift_Del	T	-	p.K143fs
LIHC	TCGA-DD-A3A0-01	TTC39A	ENST00000371750.5,ENST00000422925.1,ENST00000413473.2,ENST00000262676.5,ENST00000371747.3,ENST00000262675.7,ENST00000447632.2,ENST00000411642.2,ENST00000439482.1,ENST00000451380.1	chr1	51770752:51770818:51771648:51771748:51774932:51774997,	51771649	51771748	51771660	51771660	Frame_Shift_Del	C	-	p.A225fs
LIHC	TCGA-DD-A3A0-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000493793.1	chr1	51871576:51871780:51873806:51874004:51875206:51875368,	51873807	51874004	51873990	51873990	Frame_Shift_Del	T	-	p.K430fs
LIHC	TCGA-DD-A3A0-01	TXNDC12	ENST00000371626.4,ENST00000472624.1	chr1	52486597:52486684:52489162:52489246:52490181:52490251,	52489163	52489246	52489181	52489181	Frame_Shift_Del	A	-	p.Y141fs
LIHC	TCGA-DD-A3A0-01	TXNDC12	ENST00000371626.4,ENST00000472624.1	chr1	52486597:52486684:52489162:52489246:52490181:52490251,	52489163	52489246	52489242	52489242	Frame_Shift_Del	G	-	p.P120fs
LIHC	TCGA-DD-A3A0-01	TXNDC12	ENST00000371626.4,ENST00000472624.1	chr1	52490181:52490251:52492946:52493020:52494249:52494302,	52492947	52493020	52492973	52492973	Frame_Shift_Del	G	-	p.H87fs
LIHC	TCGA-DD-A3A0-01	BTF3L4	ENST00000472944.2	chr1	52522003:52522051:52530496:52530610:52549011:52549172,	52530497	52530610	52530551	52530551	Frame_Shift_Del	A	-	p.K38fs
LIHC	TCGA-DD-A3A0-01	ZYG11B	ENST00000545132.1,ENST00000443756.2,ENST00000294353.6	chr1	53250548:53250725:53255674:53255739:53261963:53262063,	53255675	53255739	53255716	53255716	Frame_Shift_Del	C	-	p.I437fs
LIHC	TCGA-DD-A3A0-01	ZYG11A	ENST00000371528.1	chr1	53320136:53320302:53322669:53323421:53326402:53326519,	53322670	53323421	53323269	53323269	Frame_Shift_Del	A	-	p.N286fs
LIHC	TCGA-DD-A3A0-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2,ENST00000371513.5	chr1	53427174:53427301:53440440:53440504:53442354:53442384,	53440441	53440504	53440476	53440476	Frame_Shift_Del	A	-	p.K187fs
LIHC	TCGA-DD-A3A0-01	PODN	ENST00000371500.3,ENST00000312553.5	chr1	53540277:53540342:53541533:53541643:53542861:53543018,	53541534	53541643	53541546	53541546	Frame_Shift_Del	C	-	p.P191fs
LIHC	TCGA-DD-A3A0-01	CPT2	ENST00000371486.3	chr1	53666390:53666471:53667994:53668101:53675686:53676922,	53667995	53668101	53668029	53668029	Frame_Shift_Del	G	-	p.G90fs
LIHC	TCGA-DD-A3A0-01	LRP8	ENST00000465675.1,ENST00000354412.3	chr1	53736898:53737018:53741302:53741425:53746258:53746387,	53741303	53741425	53741387	53741387	Frame_Shift_Del	C	-	p.D308fs
LIHC	TCGA-DD-A3A0-01	NDC1	ENST00000371429.3,ENST00000540001.1,ENST00000537333.1,ENST00000234725.8	chr1	54233562:54233706:54238001:54238162:54252830:54252931,	54238002	54238162	54238078	54238078	Frame_Shift_Del	T	-	p.T629fs
LIHC	TCGA-DD-A3A0-01	YIPF1	ENST00000371399.1,ENST00000072644.1	chr1	54317406:54317943:54325728:54325826:54331872:54332055,	54325729	54325826	54325815	54325815	Frame_Shift_Del	A	-	p.F281fs
LIHC	TCGA-DD-A3A0-01	HSPB11	ENST00000371377.3,ENST00000194214.5,ENST00000371378.2	chr1	54394044:54394113:54395711:54395818:54405657:54405770,	54395712	54395818	54395778	54395778	Frame_Shift_Del	G	-	p.Q47fs
LIHC	TCGA-DD-A3A0-01	HSPB11	ENST00000371377.3,ENST00000194214.5	chr1	54395748:54395818:54405657:54405770:54411227:54411245,	54405658	54405770	54405684	54405684	Frame_Shift_Del	T	-	p.K24fs
LIHC	TCGA-DD-A3A0-01	LRRC42	ENST00000319223.4,ENST00000371370.3,ENST00000444987.1	chr1	54418011:54418145:54423821:54423953:54426028:54426141,	54423822	54423953	54423879	54423879	Frame_Shift_Del	C	-	p.C177fs
LIHC	TCGA-DD-A3A0-01	TMEM59	ENST00000371348.1,ENST00000371344.1,ENST00000371341.1,ENST00000234831.5,ENST00000452421.1,ENST00000440019.1,ENST00000420738.1	chr1	54502282:54502391:54506428:54506510:54507396:54507478,	54506429	54506510	54506473	54506473	Frame_Shift_Del	A	-	p.F90fs
LIHC	TCGA-DD-A3A0-01	TCEANC2	ENST00000371331.1,ENST00000234827.1	chr1	54520053:54520197:54534428:54534570:54554269:54554463,	54534429	54534570	54534452	54534452	Frame_Shift_Del	A	-	p.I42fs
LIHC	TCGA-DD-A3A0-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.P117fs
LIHC	TCGA-DD-A3A0-01	PCSK9	ENST00000490692.1,ENST00000302118.5	chr1	55523100:55523187:55523708:55523882:55524171:55524320,	55523709	55523882	55523861	55523861	Frame_Shift_Del	C	-	p.P446fs
LIHC	TCGA-DD-A3A0-01	PCSK9	ENST00000543384.1,ENST00000302118.5	chr1	55524171:55524320:55525158:55525336:55527047:55527229,	55525159	55525336	55525184	55525184	Frame_Shift_Del	G	-	p.R510fs
LIHC	TCGA-DD-A3A0-01	C8B	ENST00000535057.1,ENST00000543257.1,ENST00000371237.4	chr1	57409368:57409497:57411493:57411734:57415227:57415425,	57411494	57411734	57411576	57411576	Frame_Shift_Del	C	-	p.G289fs
LIHC	TCGA-DD-A3A0-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59787207:59787422:59805629:59805741:59811918:59812041,	59805630	59805741	59805700	59805700	Frame_Shift_Del	T	-	p.V91fs
LIHC	TCGA-DD-A3A0-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812017	59812017	Frame_Shift_Del	G	-	p.G139fs
LIHC	TCGA-DD-A3A0-01	FGGY	ENST00000495718.1,ENST00000371218.4,ENST00000371212.1,ENST00000303721.7,ENST00000485720.1,ENST00000430447.1,ENST00000475949.1,ENST00000474476.1,ENST00000371210.1	chr1	60019795:60019899:60073474:60073582:60091659:60091695,	60073475	60073582	60073514	60073514	Frame_Shift_Del	C	-	p.P315fs
LIHC	TCGA-DD-A3A0-01	C1orf87	ENST00000488027.1,ENST00000486478.1,ENST00000371201.3,ENST00000491817.2,ENST00000395552.1,ENST00000450089.2	chr1	60456471:60456505:60463280:60463488:60466748:60466828,	60463281	60463488	60463409	60463409	Frame_Shift_Del	T	-	p.K451fs
LIHC	TCGA-DD-A3A0-01	NFIA	ENST00000476646.1,ENST00000407417.3,ENST00000485903.2,ENST00000371189.4,ENST00000371187.3,ENST00000371191.1,ENST00000403491.3	chr1	61554083:61554352:61743191:61743257:61798183:61798258,	61743192	61743257	61743239	61743239	Frame_Shift_Del	A	-	p.K203fs
LIHC	TCGA-DD-A3A0-01	TM2D1	ENST00000496465.1,ENST00000371177.2,ENST00000371180.2,ENST00000371178.1,ENST00000488206.1,ENST00000468586.1,ENST00000606498.1,ENST00000294613.5	chr1	62166605:62166697:62175000:62175109:62189384:62189444,	62175001	62175109	62175056	62175056	Frame_Shift_Del	T	-	p.T98fs
LIHC	TCGA-DD-A3A0-01	KANK4	ENST00000371153.4	chr1	62733958:62734177:62737149:62737261:62738875:62740759,	62737150	62737261	62737180	62737180	Frame_Shift_Del	T	-	p.K661fs
LIHC	TCGA-DD-A3A0-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62739778	62739778	Frame_Shift_Del	C	-	p.G333fs
LIHC	TCGA-DD-A3A0-01	USP1	ENST00000339950.4	chr1	62902325:62903071:62905469:62905708:62907158:62907251,	62905470	62905708	62905646	62905646	Frame_Shift_Del	T	-	p.A36fs
LIHC	TCGA-DD-A3A0-01	USP1	ENST00000339950.4	chr1	62902325:62903071:62905469:62905708:62907158:62907251,	62905470	62905708	62905652	62905652	Frame_Shift_Del	T	-	p.D38fs
LIHC	TCGA-DD-A3A0-01	DOCK7	ENST00000340370.5,ENST00000251157.5	chr1	63024659:63024891:63027287:63027374:63042932:63043034,	63027288	63027374	63027327	63027327	Frame_Shift_Del	A	-	p.F720fs
LIHC	TCGA-DD-A3A0-01	ANGPTL3	ENST00000371129.3	chr1	63067990:63068051:63069639:63069906:63070303:63071830,	63069640	63069906	63069849	63069849	Frame_Shift_Del	T	-	p.F381fs
LIHC	TCGA-DD-A3A0-01	ATG4C	ENST00000317868.4,ENST00000371120.3,ENST00000443289.1,ENST00000371118.1	chr1	63270842:63270926:63282245:63282479:63284675:63284736,	63282246	63282479	63282307	63282307	Frame_Shift_Del	A	-	p.G74fs
LIHC	TCGA-DD-A3A0-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284957	63284957	Frame_Shift_Del	A	-	p.K227fs
LIHC	TCGA-DD-A3A0-01	EFCAB7	ENST00000371088.4	chr1	64017395:64017505:64021028:64021186:64022784:64022918,	64021029	64021186	64021104	64021104	Frame_Shift_Del	A	-	p.K379fs
LIHC	TCGA-DD-A3A0-01	CACHD1	ENST00000495994.1,ENST00000290039.5,ENST00000371073.2	chr1	65016276:65016339:65047838:65047987:65068488:65068595,	65047839	65047987	65047845	65047845	Frame_Shift_Del	A	-	p.K91fs
LIHC	TCGA-DD-A3A0-01	CACHD1	ENST00000495994.1,ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65124387:65124556:65129377:65129520:65130180:65130362,	65129378	65129520	65129417	65129417	Frame_Shift_Del	C	-	p.S664fs
LIHC	TCGA-DD-A3A0-01	CACHD1	ENST00000495994.1,ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65130180:65130362:65131739:65131850:65137246:65137369,	65131740	65131850	65131765	65131765	Frame_Shift_Del	G	-	p.G768fs
LIHC	TCGA-DD-A3A0-01	LEPR	ENST00000344610.8,ENST00000406510.3,ENST00000462765.1,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66031228:66031288:66036155:66036485:66038008:66038132,	66036156	66036485	66036365	66036365	Frame_Shift_Del	A	-	p.K84fs
LIHC	TCGA-DD-A3A0-01	LEPR	ENST00000344610.8,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66075629:66075789:66075896:66075979:66081690:66081907,	66075897	66075979	66075947	66075947	Frame_Shift_Del	A	-	p.K656fs
LIHC	TCGA-DD-A3A0-01	PDE4B	ENST00000329654.4,ENST00000371049.3,ENST00000341517.4	chr1	66378997:66379039:66384279:66384518:66713142:66713227,	66384280	66384518	66384501	66384501	Frame_Shift_Del	A	-	p.T89fs
LIHC	TCGA-DD-A3A0-01	PDE4B	ENST00000329654.4,ENST00000371049.3,ENST00000371045.5,ENST00000423207.2,ENST00000341517.4,ENST00000480109.2	chr1	66833625:66833748:66834469:66834652:66837995:66838361,	66834470	66834652	66834563	66834563	Frame_Shift_Del	T	-	p.F572fs
LIHC	TCGA-DD-A3A0-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147585	67147585	Frame_Shift_Del	A	-	p.E283fs
LIHC	TCGA-DD-A3A0-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147796	67147796	Frame_Shift_Del	C	-	p.G353fs
LIHC	TCGA-DD-A3A0-01	SGIP1	ENST00000371037.4,ENST00000371035.3,ENST00000237247.6	chr1	67155872:67155999:67161116:67161176:67184976:67185088,	67161117	67161176	67161154	67161154	Frame_Shift_Del	A	-	p.G536fs
LIHC	TCGA-DD-A3A0-01	WDR78	ENST00000531980.1	chr1	67327955:67327985:67337052:67337192:67356836:67356949,	67337053	67337192	67337109	67337109	Frame_Shift_Del	T	-	p.N295fs
LIHC	TCGA-DD-A3A0-01	WDR78	ENST00000531980.1	chr1	67327955:67327985:67337052:67337192:67356836:67356949,	67337053	67337192	67337140	67337140	Frame_Shift_Del	G	-	p.L285fs
LIHC	TCGA-DD-A3A0-01	C1orf141	ENST00000371007.2,ENST00000544837.1,ENST00000448166.2,ENST00000371006.1	chr1	67559241:67559287:67560917:67561104:67561934:67562004,	67560918	67561104	67561015	67561015	Frame_Shift_Del	T	-	p.K170fs
LIHC	TCGA-DD-A3A0-01	IL12RB2	ENST00000371000.1,ENST00000544434.1	chr1	67773636:67773650:67786015:67786127:67787284:67787572,	67786016	67786127	67786063	67786063	Frame_Shift_Del	T	-	p.T4fs
LIHC	TCGA-DD-A3A0-01	SERBP1	ENST00000361219.6,ENST00000370990.5,ENST00000370995.2,ENST00000370994.4,ENST00000493607.1	chr1	67880955:67881022:67885691:67885869:67889882:67889960,	67885692	67885869	67885779	67885779	Frame_Shift_Del	T	-	p.K282fs
LIHC	TCGA-DD-A3A0-01	SERBP1	ENST00000370990.5,ENST00000490406.1,ENST00000370994.4	chr1	67890570:67890642:67890765:67890906:67891817:67891968,	67890766	67890906	67890850	67890850	Frame_Shift_Del	C	-	p.G174fs
LIHC	TCGA-DD-A3A0-01	WLS	ENST00000354777.2	chr1	68624866:68624930:68659637:68659904:68697876:68697963,	68659638	68659904	68659857	68659857	Frame_Shift_Del	G	-	p.R54fs
LIHC	TCGA-DD-A3A0-01	WLS	ENST00000530486.1	chr1	68624866:68624930:68659637:68659910:68697876:68697963,68624866:68624930:68659637:68659910:68698342:68698701,	68659638	68659910	68659857	68659857	Frame_Shift_Del	G	-	p.R54fs
LIHC	TCGA-DD-A3A0-01	DEPDC1	ENST00000370966.5	chr1	68955252:68955291:68960112:68960378:68962634:68962765,	68960113	68960378	68960331	68960331	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-DD-A3A0-01	ANKRD13C	ENST00000370944.4,ENST00000262346.6	chr1	70742447:70742527:70758070:70758232:70761812:70761944,	70758071	70758232	70758074	70758074	Frame_Shift_Del	A	-	p.F404fs
LIHC	TCGA-DD-A3A0-01	CTH	ENST00000464926.1,ENST00000411986.2,ENST00000370938.3	chr1	70887248:70887358:70889967:70890099:70895476:70895534,	70889968	70890099	70889994	70889994	Frame_Shift_Del	C	-	p.N129fs
LIHC	TCGA-DD-A3A0-01	PTGER3	ENST00000370932.2	chr1	71419445:71419472:71477987:71478167:71512363:71513281,71439979:71440071:71477987:71478167:71512363:71513281,71318255:71318542:71477987:71478167:71512363:71513281,	71477988	71478167	71478069	71478069	Frame_Shift_Del	A	-	p.V332fs
LIHC	TCGA-DD-A3A0-01	PTGER3	ENST00000351052.5	chr1	71439979:71440071:71477900:71478167:71512363:71513281,	71477901	71478167	71478069	71478069	Frame_Shift_Del	A	-	p.V332fs
LIHC	TCGA-DD-A3A0-01	NEGR1	ENST00000306821.3,ENST00000357731.5	chr1	72076726:72076829:72163690:72163822:72241854:72241980,	72163691	72163822	72163738	72163738	Frame_Shift_Del	T	-	p.N207fs
LIHC	TCGA-DD-A3A0-01	NEGR1	ENST00000306821.3,ENST00000357731.5,ENST00000467479.1	chr1	72163690:72163822:72241854:72241980:72400761:72400994,	72241855	72241980	72241898	72241898	Frame_Shift_Del	C	-	p.G164fs
LIHC	TCGA-DD-A3A0-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507427	74507427	Frame_Shift_Del	T	-	p.K396fs
LIHC	TCGA-DD-A3A0-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507427	74507427	Frame_Shift_Del	T	-	p.K396fs
LIHC	TCGA-DD-A3A0-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74507374:74507617:74540344:74540474:74575077:74575237,	74540345	74540474	74540369	74540369	Frame_Shift_Del	T	-	p.T325fs
LIHC	TCGA-DD-A3A0-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74507374:74507617:74540344:74540474:74575077:74575237,	74540345	74540474	74540391	74540391	Frame_Shift_Del	T	-	p.K317fs
LIHC	TCGA-DD-A3A0-01	CRYZ	ENST00000370872.3,ENST00000417775.1,ENST00000340866.5	chr1	75172582:75172678:75172786:75172888:75175781:75175931,	75172787	75172888	75172833	75172833	Frame_Shift_Del	T	-	p.N229fs
LIHC	TCGA-DD-A3A0-01	CRYZ	ENST00000370871.3,ENST00000340866.5	chr1	75188801:75188954:75190394:75190518:75198639:75198702,	75190395	75190518	75190464	75190464	Frame_Shift_Del	A	-	p.F14fs
LIHC	TCGA-DD-A3A0-01	TYW3	ENST00000457880.2	chr1	75204373:75204472:75214434:75214506:75217975:75218059,75202225:75202306:75214434:75214506:75217975:75218059,	75214435	75214506	75214494	75214494	Frame_Shift_Del	A	-	p.G138fs
LIHC	TCGA-DD-A3A0-01	SLC44A5	ENST00000370859.3,ENST00000535611.1,ENST00000370855.5	chr1	75679603:75679674:75680289:75680363:75681438:75681542,	75680290	75680363	75680299	75680299	Frame_Shift_Del	T	-	p.N598fs
LIHC	TCGA-DD-A3A0-01	ACADM	ENST00000370834.5	chr1	76198537:76198607:76198735:76198834:76199212:76199313,	76198736	76198834	76198786	76198786	Frame_Shift_Del	T	-	p.F114fs
LIHC	TCGA-DD-A3A0-01	ACADM	ENST00000532207.1,ENST00000529059.1,ENST00000526129.1,ENST00000525808.1,ENST00000541113.1,ENST00000370834.5,ENST00000420607.2,ENST00000526196.1,ENST00000543667.1,ENST00000370841.4,ENST00000534334.1	chr1	76211519:76211599:76215103:76215244:76216135:76216231,	76215104	76215244	76215202	76215202	Frame_Shift_Del	T	-	p.G269fs
LIHC	TCGA-DD-A3A0-01	ACADM	ENST00000529059.1,ENST00000525808.1,ENST00000541113.1,ENST00000370834.5,ENST00000420607.2,ENST00000526196.1,ENST00000543667.1,ENST00000370841.4	chr1	76216135:76216231:76226806:76227055:76228376:76228494,	76226807	76227055	76227002	76227002	Frame_Shift_Del	T	-	p.F381fs
LIHC	TCGA-DD-A3A0-01	RABGGTB	ENST00000471759.1,ENST00000319942.3,ENST00000462042.1,ENST00000473406.1,ENST00000535300.1,ENST00000470201.1,ENST00000370826.3,ENST00000491266.1	chr1	76253181:76253289:76254843:76255041:76255636:76255959,	76254844	76255041	76255016	76255016	Frame_Shift_Del	T	-	p.L96fs
LIHC	TCGA-DD-A3A0-01	ST6GALNAC5	ENST00000477717.1	chr1	77509888:77510298:77515942:77516050:77528659:77529743,	77515943	77516050	77516034	77516034	Frame_Shift_Del	C	-	p.P256fs
LIHC	TCGA-DD-A3A0-01	ST6GALNAC5	ENST00000318803.6	chr1	77509888:77510298:77515946:77516050:77528659:77529743,	77515947	77516050	77516034	77516034	Frame_Shift_Del	C	-	p.P256fs
LIHC	TCGA-DD-A3A0-01	PIGK	ENST00000370812.3,ENST00000359130.1	chr1	77629530:77629627:77632403:77632515:77634944:77635004,	77632404	77632515	77632496	77632496	Frame_Shift_Del	A	-	p.L132fs
LIHC	TCGA-DD-A3A0-01	AK5	ENST00000344720.5,ENST00000354567.2	chr1	77987511:77987628:78001531:78001723:78024286:78024414,	78001532	78001723	78001705	78001705	Frame_Shift_Del	A	-	p.T508fs
LIHC	TCGA-DD-A3A0-01	USP33	ENST00000370793.1,ENST00000370794.3,ENST00000357428.1	chr1	78167053:78167156:78177431:78177540:78178884:78178966,	78177432	78177540	78177455	78177455	Frame_Shift_Del	T	-	p.T826fs
LIHC	TCGA-DD-A3A0-01	USP33	ENST00000370793.1,ENST00000370792.3,ENST00000370794.3,ENST00000357428.1	chr1	78191306:78191447:78193979:78194397:78195544:78195623,	78193980	78194397	78194144	78194144	Frame_Shift_Del	T	-	p.N356fs
LIHC	TCGA-DD-A3A0-01	NEXN	ENST00000330010.8	chr1	78354346:78354444:78381739:78381818:78383644:78383723,	78381740	78381818	78381808	78381808	Frame_Shift_Del	A	-	p.Q6fs
LIHC	TCGA-DD-A3A0-01	NEXN	ENST00000294624.8,ENST00000457030.1,ENST00000440324.1,ENST00000334785.7	chr1	78381739:78381818:78383250:78383442:78383644:78383723,	78383251	78383442	78383295	78383295	Frame_Shift_Del	A	-	p.P24fs
LIHC	TCGA-DD-A3A0-01	NEXN	ENST00000294624.8,ENST00000457030.1,ENST00000440324.1,ENST00000334785.7	chr1	78381739:78381818:78383250:78383442:78383644:78383723,	78383251	78383442	78383394	78383394	Frame_Shift_Del	A	-	p.R57fs
LIHC	TCGA-DD-A3A0-01	NEXN	ENST00000401035.3,ENST00000330010.8	chr1	78381739:78381818:78383644:78383723:78383809:78383958,	78383645	78383723	78383690	78383690	Frame_Shift_Del	A	-	p.K25fs
LIHC	TCGA-DD-A3A0-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401562	78401562	Frame_Shift_Del	A	-	p.K372fs
LIHC	TCGA-DD-A3A0-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401649	78401649	Frame_Shift_Del	A	-	p.K402fs
LIHC	TCGA-DD-A3A0-01	IFI44	ENST00000370747.4,ENST00000438486.1,ENST00000545124.1,ENST00000470323.1,ENST00000472152.1,ENST00000495254.1	chr1	79119927:79119964:79120698:79120894:79121046:79121196,	79120699	79120894	79120808	79120808	Frame_Shift_Del	T	-	p.F203fs
LIHC	TCGA-DD-A3A0-01	IFI44	ENST00000370747.4,ENST00000438486.1,ENST00000545124.1,ENST00000470323.1,ENST00000472152.1,ENST00000495254.1	chr1	79119927:79119964:79120698:79120894:79121046:79121196,	79120699	79120894	79120830	79120830	Frame_Shift_Del	T	-	p.V209fs
LIHC	TCGA-DD-A3A0-01	IFI44	ENST00000485662.1	chr1	79125003:79125168:79126238:79126376:79128388:79128441,	79126239	79126376	79126353	79126353	Frame_Shift_Del	C	-	p.A93fs
LIHC	TCGA-DD-A3A0-01	SAMD13	ENST00000370671.3	chr1	84765240:84765327:84768885:84768970:84791319:84791431,	84768886	84768970	84768965	84768965	Frame_Shift_Del	A	-	p.V30fs
LIHC	TCGA-DD-A3A0-01	GNG5	ENST00000370645.4,ENST00000370641.3	chr1	84964011:84964231:84967508:84967653:84971693:84971984,	84967509	84967653	84967561	84967561	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-DD-A3A0-01	CTBS	ENST00000370625.1,ENST00000370630.5	chr1	85031523:85031695:85035613:85035822:85036264:85036403,	85035614	85035822	85035807	85035807	Frame_Shift_Del	T	-	p.K111fs
LIHC	TCGA-DD-A3A0-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4	chr1	85124000:85124151:85127880:85128058:85128137:85128213,	85127881	85128058	85127931	85127931	Frame_Shift_Del	A	-	p.S266fs
LIHC	TCGA-DD-A3A0-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4	chr1	85124000:85124151:85127880:85128058:85128137:85128213,	85127881	85128058	85128000	85128000	Frame_Shift_Del	T	-	p.I243fs
LIHC	TCGA-DD-A3A0-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331685	85331685	Frame_Shift_Del	A	-	p.F40fs
LIHC	TCGA-DD-A3A0-01	MCOLN3	ENST00000341115.4,ENST00000370589.2,ENST00000474447.1	chr1	85484590:85484940:85486752:85486959:85487752:85487875,	85486753	85486959	85486925	85486925	Frame_Shift_Del	A	-	p.F452fs
LIHC	TCGA-DD-A3A0-01	MCOLN3	ENST00000370589.2,ENST00000370587.1	chr1	85499780:85499934:85506692:85506860:85510815:85511043,	85506693	85506860	85506712	85506712	Frame_Shift_Del	A	-	p.L126fs
LIHC	TCGA-DD-A3A0-01	WDR63	ENST00000294664.6,ENST00000464801.1	chr1	85551513:85551713:85555798:85555915:85559140:85559331,	85555799	85555915	85555869	85555869	Frame_Shift_Del	A	-	p.K271fs
LIHC	TCGA-DD-A3A0-01	WDR63	ENST00000294664.6,ENST00000464801.1,ENST00000484007.1,ENST00000370596.1,ENST00000326813.8	chr1	85592235:85592398:85594390:85594482:85595672:85595795,	85594391	85594482	85594419	85594419	Frame_Shift_Del	T	-	p.D782fs
LIHC	TCGA-DD-A3A0-01	SYDE2	ENST00000341460.5	chr1	85622555:85624932:85630208:85630440:85634726:85634908,	85630209	85630440	85630249	85630249	Frame_Shift_Del	T	-	p.K1015fs
LIHC	TCGA-DD-A3A0-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648015	85648015	Frame_Shift_Del	A	-	p.F770fs
LIHC	TCGA-DD-A3A0-01	ODF2L	ENST00000370566.3,ENST00000370567.1,ENST00000488879.2,ENST00000486557.1,ENST00000524695.1,ENST00000460698.2,ENST00000394731.1,ENST00000496592.1,ENST00000294678.2,ENST00000479890.1	chr1	86826114:86826219:86836700:86836836:86838113:86838223,	86836701	86836836	86836783	86836783	Frame_Shift_Del	T	-	p.N325fs
LIHC	TCGA-DD-A3A0-01	ODF2L	ENST00000479890.1	chr1	86841915:86842101:86848613:86848685:86848816:86848879,	86848614	86848685	86848637	86848637	Frame_Shift_Del	A	-	p.S162fs
LIHC	TCGA-DD-A3A0-01	SH3GLB1	ENST00000482504.1	chr1	87170577:87170654:87181406:87181548:87185189:87185318,	87181407	87181548	87181518	87181518	Frame_Shift_Del	C	-	p.Q62fs
LIHC	TCGA-DD-A3A0-01	SH3GLB1	ENST00000482504.1,ENST00000535010.1,ENST00000370558.4	chr1	87185189:87185318:87188222:87188356:87189995:87190088,	87188223	87188356	87188253	87188253	Frame_Shift_Del	A	-	p.Q125fs
LIHC	TCGA-DD-A3A0-01	SH3GLB1	ENST00000482504.1,ENST00000535010.1,ENST00000370558.4	chr1	87185189:87185318:87188222:87188356:87189995:87190088,	87188223	87188356	87188327	87188327	Frame_Shift_Del	T	-	p.F150fs
LIHC	TCGA-DD-A3A0-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206728	89206728	Frame_Shift_Del	T	-	p.F36fs
LIHC	TCGA-DD-A3A0-01	PKN2	ENST00000316005.7,ENST00000370513.5,ENST00000370505.3,ENST00000370521.3	chr1	89225904:89226059:89236034:89236152:89237103:89237249,	89236035	89236152	89236085	89236085	Frame_Shift_Del	A	-	p.T185fs
LIHC	TCGA-DD-A3A0-01	PKN2	ENST00000316005.7,ENST00000370513.5,ENST00000370505.3,ENST00000370521.3	chr1	89225904:89226059:89236034:89236152:89237103:89237249,	89236035	89236152	89236124	89236124	Frame_Shift_Del	C	-	p.V198fs
LIHC	TCGA-DD-A3A0-01	PKN2	ENST00000316005.7,ENST00000370505.3,ENST00000370521.3,ENST00000544045.1,ENST00000436111.1	chr1	89251786:89251896:89270073:89270217:89270528:89270577,	89270074	89270217	89270163	89270163	Frame_Shift_Del	C	-	p.N457fs
LIHC	TCGA-DD-A3A0-01	PKN2	ENST00000370513.5,ENST00000370505.3,ENST00000370521.3,ENST00000544045.1	chr1	89273366:89273458:89279239:89279416:89287623:89287686,	89279240	89279416	89279320	89279320	Frame_Shift_Del	A	-	p.Q728fs
LIHC	TCGA-DD-A3A0-01	PKN2	ENST00000370513.5,ENST00000370505.3,ENST00000370521.3,ENST00000544045.1	chr1	89294163:89294306:89298426:89298534:89298759:89298840,	89298427	89298534	89298458	89298458	Frame_Shift_Del	T	-	p.V865fs
LIHC	TCGA-DD-A3A0-01	GBP1	ENST00000370473.4	chr1	89520364:89520558:89520795:89520898:89521698:89521742,	89520796	89520898	89520812	89520812	Frame_Shift_Del	T	-	p.K485fs
LIHC	TCGA-DD-A3A0-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90049953	90049953	Frame_Shift_Del	A	-	p.K583fs
LIHC	TCGA-DD-A3A0-01	HFM1	ENST00000370425.3,ENST00000370424.3,ENST00000430465.1	chr1	91728037:91728149:91731573:91731664:91733301:91733409,	91731574	91731664	91731617	91731617	Frame_Shift_Del	G	-	p.L1311fs
LIHC	TCGA-DD-A3A0-01	HFM1	ENST00000370425.3,ENST00000488023.1,ENST00000481900.1,ENST00000294696.5,ENST00000455133.1	chr1	91859729:91859959:91861849:91861962:91866568:91866666,	91861850	91861962	91861924	91861924	Frame_Shift_Del	G	-	p.P38fs
LIHC	TCGA-DD-A3A0-01	BRDT	ENST00000427104.1	chr1	92415861:92416031:92428274:92428503:92430183:92430279,	92428275	92428503	92428381	92428381	Frame_Shift_Del	A	-	p.K24fs
LIHC	TCGA-DD-A3A0-01	BRDT	ENST00000427104.1	chr1	92415861:92416031:92428274:92428503:92430183:92430279,	92428275	92428503	92428431	92428431	Frame_Shift_Del	A	-	p.L40fs
LIHC	TCGA-DD-A3A0-01	BRDT	ENST00000402388.1,ENST00000426141.1,ENST00000423434.1,ENST00000399546.2,ENST00000552654.1,ENST00000427104.1,ENST00000448194.1,ENST00000440509.1,ENST00000362005.3	chr1	92415861:92416031:92430183:92430321:92433702:92433781,92428363:92428503:92430183:92430321:92433702:92433781,	92430184	92430321	92430201	92430201	Frame_Shift_Del	A	-	p.I70fs
LIHC	TCGA-DD-A3A0-01	BRDT	ENST00000402388.1,ENST00000426141.1,ENST00000423434.1,ENST00000399546.2,ENST00000552654.1,ENST00000427104.1,ENST00000448194.1,ENST00000440509.1,ENST00000362005.3	chr1	92415861:92416031:92430183:92430321:92433702:92433781,92428363:92428503:92430183:92430321:92433702:92433781,	92430184	92430321	92430306	92430306	Frame_Shift_Del	T	-	p.C32fs
LIHC	TCGA-DD-A3A0-01	EVI5	ENST00000492513.1,ENST00000468580.1,ENST00000543509.1,ENST00000491940.1,ENST00000370331.1,ENST00000540033.1	chr1	93073172:93073284:93089732:93089891:93091350:93091491,	93089733	93089891	93089842	93089842	Frame_Shift_Del	T	-	p.N557fs
LIHC	TCGA-DD-A3A0-01	RPL5	ENST00000370321.3	chr1	93301746:93301949:93303012:93303190:93306107:93306196,	93303013	93303190	93303017	93303017	Frame_Shift_Del	A	-	p.K178fs
LIHC	TCGA-DD-A3A0-01	MTF2	ENST00000471953.1,ENST00000370303.4,ENST00000370298.4	chr1	93544867:93545088:93575786:93575985:93576101:93576183,	93575787	93575985	93575962	93575962	Frame_Shift_Del	T	-	p.F61fs
LIHC	TCGA-DD-A3A0-01	CCDC18	ENST00000401026.3,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93682192:93682303:93683294:93683426:93687165:93687300,	93683295	93683426	93683400	93683400	Frame_Shift_Del	A	-	p.K645fs
LIHC	TCGA-DD-A3A0-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93691889:93692006:93697982:93698150:93701804:93701947,	93697983	93698150	93698012	93698012	Frame_Shift_Del	A	-	p.I773fs
LIHC	TCGA-DD-A3A0-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93711661:93711761:93712394:93712511:93720027:93720171,	93712395	93712511	93712444	93712444	Frame_Shift_Del	A	-	p.Q1043fs
LIHC	TCGA-DD-A3A0-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93712394:93712511:93720027:93720171:93721891:93722095,	93720028	93720171	93720124	93720124	Frame_Shift_Del	A	-	p.K1099fs
LIHC	TCGA-DD-A3A0-01	CCDC18	ENST00000370276.1,ENST00000343253.7	chr1	93730257:93730458:93735903:93736371:93744019:93744034,	93735904	93736371	93736023	93736023	Frame_Shift_Del	A	-	p.P1334fs
LIHC	TCGA-DD-A3A0-01	FNBP1L	ENST00000260506.8,ENST00000370256.4,ENST00000370253.2,ENST00000604705.1,ENST00000271234.7	chr1	93965024:93965140:93987638:93987692:93988900:93989048,	93987639	93987692	93987660	93987660	Frame_Shift_Del	C	-	p.C54fs
LIHC	TCGA-DD-A3A0-01	BCAR3	ENST00000260502.6,ENST00000370244.1,ENST00000539242.1,ENST00000370243.1,ENST00000370247.3	chr1	94033296:94033408:94037226:94037398:94041570:94041686,	94037227	94037398	94037274	94037274	Frame_Shift_Del	C	-	p.D643fs
LIHC	TCGA-DD-A3A0-01	DNTTIP2	ENST00000436063.2	chr1	94338674:94338770:94341200:94341339:94341823:94341971,	94341201	94341339	94341211	94341211	Frame_Shift_Del	T	-	p.K600fs
LIHC	TCGA-DD-A3A0-01	ABCA4	ENST00000370225.3	chr1	94520666:94520871:94522156:94522378:94526092:94526315,	94522157	94522378	94522350	94522350	Frame_Shift_Del	G	-	p.P730fs
LIHC	TCGA-DD-A3A0-01	ARHGAP29	ENST00000370217.3,ENST00000260526.6	chr1	94685813:94685948:94696962:94697199:94702970:94703121,	94696963	94697199	94697132	94697132	Frame_Shift_Del	T	-	p.K12fs
LIHC	TCGA-DD-A3A0-01	SLC44A3	ENST00000530397.1,ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95307555:95307680:95310833:95311020:95322890:95323056,	95310834	95311020	95310970	95310970	Frame_Shift_Del	T	-	p.I341fs
LIHC	TCGA-DD-A3A0-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95332889:95332973:95356685:95356823:95360373:95360585,95332889:95332973:95356685:95356823:95357836:95358073,	95356686	95356823	95356749	95356749	Frame_Shift_Del	A	-	p.K516fs
LIHC	TCGA-DD-A3A0-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95332889:95332973:95356685:95356823:95360373:95360585,95332889:95332973:95356685:95356823:95357836:95358073,	95356686	95356823	95356803	95356803	Frame_Shift_Del	T	-	p.F534fs
LIHC	TCGA-DD-A3A0-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95358025	95358025	Frame_Shift_Del	A	-	p.T603fs
LIHC	TCGA-DD-A3A0-01	PTBP2	ENST00000370197.1,ENST00000609116.1,ENST00000394184.3,ENST00000459735.1,ENST00000426398.2,ENST00000370198.1,ENST00000482253.1	chr1	97270355:97270495:97271974:97272008:97272421:97272514,	97271975	97272008	97271984	97271984	Frame_Shift_Del	C	-	p.P352fs
LIHC	TCGA-DD-A3A0-01	DPYD	ENST00000370192.3	chr1	97700407:97700550:97770814:97770934:97771732:97771853,	97770815	97770934	97770859	97770859	Frame_Shift_Del	G	-	p.P752fs
LIHC	TCGA-DD-A3A0-01	DPYD	ENST00000370192.3	chr1	97981281:97981497:98015115:98015300:98039315:98039526,	98015116	98015300	98015167	98015167	Frame_Shift_Del	T	-	p.E491fs
LIHC	TCGA-DD-A3A0-01	DPYD	ENST00000370192.3	chr1	98157276:98157354:98164906:98165103:98187065:98187210,	98164907	98165103	98165051	98165051	Frame_Shift_Del	G	-	p.P179fs
LIHC	TCGA-DD-A3A0-01	SNX7	ENST00000306121.3,ENST00000528824.1,ENST00000370189.5	chr1	99156630:99156741:99157090:99157255:99161073:99161272,	99157091	99157255	99157214	99157214	Frame_Shift_Del	T	-	p.F136fs
LIHC	TCGA-DD-A3A0-01	PALMD	ENST00000496843.1,ENST00000263174.4	chr1	100152631:100152745:100154330:100155428:100159574:100160097,	100154331	100155428	100154442	100154442	Frame_Shift_Del	T	-	p.V209fs
LIHC	TCGA-DD-A3A0-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100335955:100336137:100336313:100336425:100340242:100340366,	100336314	100336425	100336368	100336368	Frame_Shift_Del	T	-	p.F302fs
LIHC	TCGA-DD-A3A0-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000477753.1,ENST00000370163.3,ENST00000294724.4	chr1	100340709:100340812:100340913:100341011:100342013:100342153,	100340914	100341011	100340970	100340970	Frame_Shift_Del	A	-	p.P414fs
LIHC	TCGA-DD-A3A0-01	RTCA	ENST00000370128.4	chr1	100732079:100732180:100733707:100733851:100736112:100736236,	100733708	100733851	100733731	100733731	Frame_Shift_Del	A	-	p.E57fs
LIHC	TCGA-DD-A3A0-01	RTCA	ENST00000498617.1	chr1	100732079:100732180:100733629:100733851:100736112:100736236,	100733630	100733851	100733731	100733731	Frame_Shift_Del	A	-	p.E57fs
LIHC	TCGA-DD-A3A0-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
LIHC	TCGA-DD-A3A0-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000370124.3,ENST00000336454.3	chr1	100920960:100921048:100928206:100928437:100933511:100933650,	100928207	100928437	100928248	100928248	Frame_Shift_Del	A	-	p.S187fs
LIHC	TCGA-DD-A3A0-01	VCAM1	ENST00000370115.1,ENST00000347652.2,ENST00000294728.2	chr1	101185319:101185480:101186031:101186307:101188575:101188896,	101186032	101186307	101186056	101186056	Frame_Shift_Del	C	-	p.T30fs
LIHC	TCGA-DD-A3A0-01	SLC30A7	ENST00000357650.4,ENST00000370112.4	chr1	101387261:101387397:101427383:101427474:101431324:101431474,	101427384	101427474	101427436	101427436	Frame_Shift_Del	C	-	p.P299fs
LIHC	TCGA-DD-A3A0-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.G557fs
LIHC	TCGA-DD-A3A0-01	COL11A1	ENST00000358392.2,ENST00000427239.1	chr1	103491076:103491169:103491355:103491508:103496671:103496800,	103491356	103491508	103491416	103491416	Frame_Shift_Del	T	-	p.K291fs
LIHC	TCGA-DD-A3A0-01	VAV3	ENST00000371846.4,ENST00000490388.2,ENST00000527011.1	chr1	108322055:108322114:108417522:108417639:108507287:108507475,	108417523	108417639	108417586	108417586	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-DD-A3A0-01	SLC25A24	ENST00000565488.1,ENST00000370041.4,ENST00000264128.9	chr1	108677444:108679459:108681679:108681830:108686164:108686332,	108681680	108681830	108681801	108681801	Frame_Shift_Del	A	-	p.F376fs
LIHC	TCGA-DD-A3A0-01	STXBP3	ENST00000370008.3	chr1	109342841:109342927:109350022:109350171:109351404:109352148,	109350023	109350171	109350124	109350124	Frame_Shift_Del	G	-	p.C546fs
LIHC	TCGA-DD-A3A0-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109446746:109446876:109456959:109457030:109461234:109461411,	109456960	109457030	109457013	109457013	Frame_Shift_Del	A	-	p.K416fs
LIHC	TCGA-DD-A3A0-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466643	109466643	Frame_Shift_Del	C	-	p.S541fs
LIHC	TCGA-DD-A3A0-01	PSRC1	ENST00000429031.1,ENST00000369907.3,ENST00000369909.2,ENST00000369903.2,ENST00000369904.3,ENST00000438534.2,ENST00000409267.1,ENST00000409138.2,ENST00000418914.2	chr1	109823776:109823873:109824240:109824682:109825139:109825197,	109824241	109824682	109824338	109824338	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A3A0-01	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110086638	110086638	Frame_Shift_Del	T	-	p.F332fs
LIHC	TCGA-DD-A3A0-01	AMPD2	ENST00000474459.1	chr1	110162761:110162900:110168283:110168414:110168781:110168820,	110168284	110168414	110168340	110168340	Frame_Shift_Del	C	-	p.F147fs
LIHC	TCGA-DD-A3A0-01	GSTM2	ENST00000464206.1,ENST00000460717.3,ENST00000476040.2,ENST00000241337.4,ENST00000369829.2,ENST00000369831.2,ENST00000467579.3,ENST00000369827.3,ENST00000568786.1,ENST00000442650.1	chr1	110211046:110211122:110211546:110211611:110211911:110211993,	110211547	110211611	110211580	110211580	Frame_Shift_Del	A	-	p.E49fs
LIHC	TCGA-DD-A3A0-01	EPS8L3	ENST00000361965.4,ENST00000361852.4,ENST00000369805.3	chr1	110300565:110300680:110300937:110301053:110301145:110301285,	110300938	110301053	110301038	110301038	Frame_Shift_Del	G	-	p.P207fs
LIHC	TCGA-DD-A3A0-01	SLC6A17	ENST00000331565.4	chr1	110719250:110719361:110734593:110734835:110735127:110735320,	110734594	110734835	110734611	110734611	Frame_Shift_Del	C	-	p.D294fs
LIHC	TCGA-DD-A3A0-01	SLC16A4	ENST00000437429.2,ENST00000541986.1,ENST00000492412.2,ENST00000528649.1,ENST00000472422.2,ENST00000369779.4	chr1	110919571:110919783:110921474:110921978:110923603:110923765,	110921475	110921978	110921901	110921901	Frame_Shift_Del	T	-	p.S202fs
LIHC	TCGA-DD-A3A0-01	SLC16A4	ENST00000369781.4,ENST00000461647.2	chr1	110921565:110921978:110923603:110923765:110924273:110924417,110921565:110921978:110923603:110923765:110931858:110931977,110919571:110919783:110923603:110923765:110924273:110924417,	110923604	110923765	110923648	110923648	Frame_Shift_Del	A	-	p.L161fs
LIHC	TCGA-DD-A3A0-01	SLC16A4	ENST00000369781.4,ENST00000461647.2	chr1	110921565:110921978:110923603:110923765:110924273:110924417,110921565:110921978:110923603:110923765:110931858:110931977,110919571:110919783:110923603:110923765:110924273:110924417,	110923604	110923765	110923704	110923704	Frame_Shift_Del	T	-	p.K142fs
LIHC	TCGA-DD-A3A0-01	LAMTOR5	ENST00000256644.4,ENST00000464240.1,ENST00000474861.2,ENST00000602858.1,ENST00000602318.1,ENST00000483260.1	chr1	110943878:110944205:110946540:110946658:110948939:110949001,	110946541	110946658	110946579	110946579	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-DD-A3A0-01	DENND2D	ENST00000357640.4,ENST00000369752.5	chr1	111730752:111730992:111731323:111731408:111731833:111731875,	111731324	111731408	111731340	111731340	Frame_Shift_Del	C	-	p.G361fs
LIHC	TCGA-DD-A3A0-01	CHI3L2	ENST00000477185.2,ENST00000474304.2,ENST00000528451.1,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000526684.1,ENST00000486561.2,ENST00000369748.4	chr1	111772479:111772503:111773363:111773565:111773859:111773916,	111773364	111773565	111773501	111773501	Frame_Shift_Del	A	-	p.K70fs
LIHC	TCGA-DD-A3A0-01	CHI3L2	ENST00000369744.2,ENST00000477185.2,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000369748.4	chr1	111778260:111778385:111778645:111778775:111781371:111781381,	111778646	111778775	111778693	111778693	Frame_Shift_Del	G	-	p.W218fs
LIHC	TCGA-DD-A3A0-01	CHI3L2	ENST00000369744.2,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000369748.4	chr1	111778645:111778775:111781371:111781554:111783948:111784065,	111781372	111781554	111781487	111781487	Frame_Shift_Del	C	-	p.A284fs
LIHC	TCGA-DD-A3A0-01	PIFO	ENST00000484512.1	chr1	111889241:111889293:111889531:111889671:111891137:111891268,111889241:111889293:111889531:111889671:111890295:111890394,	111889532	111889671	111889594	111889594	Frame_Shift_Del	C	-	p.P29fs
LIHC	TCGA-DD-A3A0-01	PIFO	ENST00000369738.4,ENST00000484512.1	chr1	111889531:111889671:111890295:111890394:111891137:111891170,	111890296	111890394	111890377	111890377	Frame_Shift_Del	T	-	p.F81fs
LIHC	TCGA-DD-A3A0-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959047	111959047	Frame_Shift_Del	C	-	p.A352fs
LIHC	TCGA-DD-A3A0-01	C1orf162	ENST00000369718.3	chr1	112019423:112019489:112019955:112020050:112020272:112020397,112019423:112019489:112019955:112020050:112020347:112020397,	112019956	112020050	112019978	112019978	Frame_Shift_Del	T	-	p.F44fs
LIHC	TCGA-DD-A3A0-01	DDX20	ENST00000533164.1,ENST00000369702.4,ENST00000536167.1	chr1	112303327:112303470:112303608:112303747:112303847:112303906,	112303609	112303747	112303721	112303721	Frame_Shift_Del	T	-	p.A312fs
LIHC	TCGA-DD-A3A0-01	DDX20	ENST00000533164.1,ENST00000369702.4,ENST00000536167.1	chr1	112303847:112303906:112304876:112304959:112305298:112305404,	112304877	112304959	112304946	112304946	Frame_Shift_Del	T	-	p.I364fs
LIHC	TCGA-DD-A3A0-01	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000544629.1,ENST00000369666.1,ENST00000497457.1,ENST00000369669.1,ENST00000369668.2,ENST00000343210.7,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000361846.3	chr1	113084572:113084712:113093222:113093315:113119607:113119710,113084572:113084712:113093222:113093315:113098489:113098498,	113093223	113093315	113093271	113093271	Frame_Shift_Del	A	-	p.Y481fs
LIHC	TCGA-DD-A3A0-01	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000480988.1,ENST00000369666.1,ENST00000497457.1,ENST00000369664.1,ENST00000543570.1,ENST00000369668.2,ENST00000343210.7,ENST00000479436.1,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000360743.4,ENST00000361846.3,ENST00000418497.1	chr1	113134146:113134225:113140592:113140708:113143415:113143470,	113140593	113140708	113140631	113140631	Frame_Shift_Del	A	-	p.F195fs
LIHC	TCGA-DD-A3A0-01	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000480988.1,ENST00000470519.1,ENST00000459630.1,ENST00000369666.1,ENST00000497457.1,ENST00000369664.1,ENST00000543570.1,ENST00000369668.2,ENST00000343210.7,ENST00000479436.1,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000360743.4,ENST00000361846.3,ENST00000418497.1	chr1	113140643:113140708:113143415:113143470:113153462:113153528,	113143416	113143470	113143437	113143437	Frame_Shift_Del	A	-	p.F162fs
LIHC	TCGA-DD-A3A0-01	PHTF1	ENST00000369598.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000447664.2	chr1	114269039:114269196:114280731:114280890:114281351:114281408,	114280732	114280890	114280832	114280832	Frame_Shift_Del	C	-	p.G77fs
LIHC	TCGA-DD-A3A0-01	AP4B1	ENST00000369569.1,ENST00000369567.1,ENST00000256658.4	chr1	114438378:114438660:114438879:114439087:114440461:114440565,	114438880	114439087	114438897	114438897	Frame_Shift_Del	A	-	p.L499fs
LIHC	TCGA-DD-A3A0-01	DCLRE1B	ENST00000369563.3	chr1	114448030:114448397:114450630:114450813:114453752:114454460,114449617:114449783:114450630:114450813:114453752:114454460,	114450631	114450813	114450806	114450806	Frame_Shift_Del	A	-	p.I177fs
LIHC	TCGA-DD-A3A0-01	SYT6	ENST00000609117.1,ENST00000610096.1,ENST00000369547.1,ENST00000607941.1,ENST00000393296.1,ENST00000610222.1	chr1	114636380:114636425:114640348:114640499:114641715:114641887,	114640349	114640499	114640405	114640405	Frame_Shift_Del	G	-	p.R487fs
LIHC	TCGA-DD-A3A0-01	TRIM33	ENST00000450349.2,ENST00000448034.1	chr1	114952805:114952938:114963001:114963073:114964057:114964258,	114963002	114963073	114963006	114963006	Frame_Shift_Del	T	-	p.N318fs
LIHC	TCGA-DD-A3A0-01	TRIM33	ENST00000358465.2,ENST00000369543.2	chr1	114952805:114952938:114964057:114964258:114967212:114967377,	114964058	114964258	114964251	114964251	Frame_Shift_Del	T	-	p.N623fs
LIHC	TCGA-DD-A3A0-01	DENND2C	ENST00000495031.1,ENST00000393276.3,ENST00000393274.1	chr1	115127152:115128252:115130007:115130094:115130336:115130573,	115130008	115130094	115130019	115130019	Frame_Shift_Del	A	-	p.L915fs
LIHC	TCGA-DD-A3A0-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115220530:115220662:115220953:115221148:115222199:115222329,	115220954	115221148	115221073	115221073	Frame_Shift_Del	T	-	p.I354fs
LIHC	TCGA-DD-A3A0-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115222309:115222329:115222879:115223099:115226819:115226985,	115222880	115223099	115222907	115222907	Frame_Shift_Del	A	-	p.L277fs
LIHC	TCGA-DD-A3A0-01	SIKE1	ENST00000060969.5,ENST00000475335.1	chr1	115321822:115321905:115322730:115322836:115323057:115323158,115321822:115321905:115322730:115322836:115323069:115323133,	115322731	115322836	115322736	115322736	Frame_Shift_Del	T	-	p.N91fs
LIHC	TCGA-DD-A3A0-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115400064:115400118:115401167:115401332:115402363:115402431,	115401168	115401332	115401207	115401207	Frame_Shift_Del	A	-	p.K111fs
LIHC	TCGA-DD-A3A0-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430252	115430252	Frame_Shift_Del	A	-	p.E399fs
LIHC	TCGA-DD-A3A0-01	SYCP1	ENST00000369522.3,ENST00000493377.1,ENST00000369518.1,ENST00000455987.1	chr1	115455653:115455771:115456595:115456666:115466069:115466151,	115456596	115456666	115456654	115456654	Frame_Shift_Del	A	-	p.E569fs
LIHC	TCGA-DD-A3A0-01	TSPAN2	ENST00000369516.2,ENST00000433172.1,ENST00000369514.2	chr1	115601503:115601602:115603084:115603159:115604755:115604853,	115603085	115603159	115603154	115603154	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A3A0-01	ATP1A1	ENST00000369494.1,ENST00000537345.1,ENST00000418797.1,ENST00000295598.5,ENST00000369496.4	chr1	116927404:116927464:116929909:116930113:116930752:116930777,	116929910	116930113	116930059	116930059	Frame_Shift_Del	T	-	p.C111fs
LIHC	TCGA-DD-A3A0-01	ATP1A1	ENST00000537345.1,ENST00000295598.5,ENST00000369496.4	chr1	116944175:116944277:116946505:116946597:116947037:116947394,	116946506	116946597	116946590	116946590	Frame_Shift_Del	C	-	p.R1012fs
LIHC	TCGA-DD-A3A0-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087123	117087123	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A3A0-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087180	117087180	Frame_Shift_Del	C	-	p.G39fs
LIHC	TCGA-DD-A3A0-01	PTGFRN	ENST00000393203.2	chr1	117503864:117504290:117509532:117509952:117516837:117516945,	117509533	117509952	117509779	117509779	Frame_Shift_Del	T	-	p.V629fs
LIHC	TCGA-DD-A3A0-01	VTCN1	ENST00000369458.3,ENST00000539893.1,ENST00000359008.4	chr1	117695830:117695991:117699195:117699543:117712728:117712784,	117699196	117699543	117699285	117699285	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A3A0-01	VTCN1	ENST00000463461.1	chr1	117695830:117695991:117699195:117699633:117712728:117712784,	117699196	117699633	117699285	117699285	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A3A0-01	WDR3	ENST00000349139.5	chr1	118472390:118472405:118475910:118476113:118477095:118477305,	118475911	118476113	118476082	118476082	Frame_Shift_Del	T	-	p.V47fs
LIHC	TCGA-DD-A3A0-01	WDR3	ENST00000349139.5	chr1	118497202:118497250:118497937:118497981:118499690:118499819,	118497938	118497981	118497960	118497960	Frame_Shift_Del	T	-	p.I811fs
LIHC	TCGA-DD-A3A0-01	SPAG17	ENST00000336338.5,ENST00000437255.1	chr1	118530456:118530504:118530727:118530827:118533483:118533529,	118530728	118530827	118530737	118530737	Frame_Shift_Del	T	-	p.K1871fs
LIHC	TCGA-DD-A3A0-01	SPAG17	ENST00000336338.5	chr1	118609367:118609522:118616476:118616590:118617161:118617223,	118616477	118616590	118616498	118616498	Frame_Shift_Del	A	-	p.F788fs
LIHC	TCGA-DD-A3A0-01	SPAG17	ENST00000336338.5	chr1	118634552:118634625:118635778:118635940:118640292:118640474,	118635779	118635940	118635917	118635917	Frame_Shift_Del	A	-	p.F345fs
LIHC	TCGA-DD-A3A0-01	TBX15	ENST00000207157.3,ENST00000369429.3	chr1	119466058:119466226:119467268:119467440:119469132:119469234,	119467269	119467440	119467373	119467373	Frame_Shift_Del	A	-	p.Y197fs
LIHC	TCGA-DD-A3A0-01	PHGDH	ENST00000493622.1,ENST00000369407.3,ENST00000369409.4	chr1	120263792:120263944:120265998:120266064:120269473:120269528,	120265999	120266064	120266001	120266001	Frame_Shift_Del	C	-	p.T64fs
LIHC	TCGA-DD-A3A0-01	PHGDH	ENST00000493622.1,ENST00000369407.3,ENST00000369409.4	chr1	120265998:120266064:120269473:120269528:120269626:120269725,	120269474	120269528	120269481	120269481	Frame_Shift_Del	C	-	p.P88fs
LIHC	TCGA-DD-A3A0-01	HMGCS2	ENST00000544913.2	chr1	120299895:120300061:120301740:120301905:120302486:120302612,120299895:120300061:120301740:120301905:120306794:120307249,	120301741	120301905	120301857	120301857	Frame_Shift_Del	T	-	p.N245fs
LIHC	TCGA-DD-A3A0-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000313382.9,ENST00000369359.4,ENST00000534367.1,ENST00000530062.1,ENST00000530130.1,ENST00000369356.4,ENST00000530740.1	chr1	144855855:144855883:144856815:144857042:144857611:144857728,	144856816	144857042	144856827	144856827	Frame_Shift_Del	G	-	p.Q2356fs
LIHC	TCGA-DD-A3A0-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562101	145562101	Frame_Shift_Del	G	-	p.G597fs
LIHC	TCGA-DD-A3A0-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562331	145562331	Frame_Shift_Del	G	-	p.V673fs
LIHC	TCGA-DD-A3A0-01	PIAS3	ENST00000393046.2,ENST00000369298.1,ENST00000369299.3,ENST00000498436.1,ENST00000393045.2	chr1	145578949:145579000:145579241:145579332:145580187:145580322,	145579242	145579332	145579285	145579285	Frame_Shift_Del	C	-	p.P209fs
LIHC	TCGA-DD-A3A0-01	NUDT17	ENST00000477878.1	chr1	145588609:145588635:145588871:145589055:145589235:145589409,	145588872	145589055	145588891	145588891	Frame_Shift_Del	G	-	p.P119fs
LIHC	TCGA-DD-A3A0-01	NUDT17	ENST00000477878.1	chr1	145588609:145588635:145588871:145589055:145589235:145589409,	145588872	145589055	145589045	145589045	Frame_Shift_Del	A	-	p.F68fs
LIHC	TCGA-DD-A3A0-01	GPR89A	ENST00000528944.1,ENST00000460277.1,ENST00000454423.3,ENST00000532574.1	chr1	145816708:145816740:145818766:145818826:145826887:145827015,	145818767	145818826	145818798	145818798	Frame_Shift_Del	A	-	p.F25fs
LIHC	TCGA-DD-A3A0-01	PRKAB2	ENST00000254101.3	chr1	146638424:146638518:146639345:146639512:146643567:146643746,	146639346	146639512	146639387	146639387	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A3A0-01	CHD1L	ENST00000361293.5	chr1	146728184:146728216:146731490:146731572:146736080:146736243,146714395:146714480:146731490:146731572:146737590:146737746,	146731491	146731572	146731534	146731534	Frame_Shift_Del	A	-	p.K180fs
LIHC	TCGA-DD-A3A0-01	CHD1L	ENST00000361293.5	chr1	146728184:146728216:146731490:146731572:146736080:146736243,146714395:146714480:146731490:146731572:146737590:146737746,	146731491	146731572	146731541	146731541	Frame_Shift_Del	A	-	p.Q182fs
LIHC	TCGA-DD-A3A0-01	CHD1L	ENST00000369259.3,ENST00000488864.1	chr1	146714395:146714480:146737590:146737746:146739084:146739177,	146737591	146737746	146737605	146737605	Frame_Shift_Del	A	-	p.K252fs
LIHC	TCGA-DD-A3A0-01	SV2A	ENST00000369145.1,ENST00000369146.3	chr1	149881352:149881442:149882121:149882255:149882377:149882529,	149882122	149882255	149882136	149882136	Frame_Shift_Del	G	-	p.R359fs
LIHC	TCGA-DD-A3A0-01	MTMR11	ENST00000369140.3,ENST00000439741.2	chr1	149902683:149902857:149903151:149903318:149903835:149903906,	149903152	149903318	149903171	149903171	Frame_Shift_Del	C	-	p.G424fs
LIHC	TCGA-DD-A3A0-01	VPS45	ENST00000535106.1,ENST00000369130.3,ENST00000369128.5	chr1	150054799:150054967:150064030:150064189:150064395:150064503,	150064031	150064189	150064186	150064186	Frame_Shift_Del	A	-	p.R420fs
LIHC	TCGA-DD-A3A0-01	ANP32E	ENST00000369119.3,ENST00000314136.8	chr1	150199085:150199127:150201404:150201570:150202905:150203028,	150201405	150201570	150201490	150201490	Frame_Shift_Del	A	-	p.F136fs
LIHC	TCGA-DD-A3A0-01	ANP32E	ENST00000369119.3,ENST00000314136.8	chr1	150199085:150199127:150201404:150201570:150202905:150203028,	150201405	150201570	150201557	150201557	Frame_Shift_Del	T	-	p.N114fs
LIHC	TCGA-DD-A3A0-01	PRPF3	ENST00000496202.1,ENST00000543398.1,ENST00000324862.6,ENST00000467329.1	chr1	150300778:150300925:150305154:150305238:150305449:150305670,	150305155	150305238	150305223	150305223	Frame_Shift_Del	C	-	p.S164fs
LIHC	TCGA-DD-A3A0-01	RPRD2	ENST00000401000.4,ENST00000369067.3,ENST00000539519.1,ENST00000369068.4	chr1	150337186:150337395:150390071:150390201:150413398:150413499,	150390072	150390201	150390137	150390137	Frame_Shift_Del	A	-	p.K91fs
LIHC	TCGA-DD-A3A0-01	TARS2	ENST00000369064.3,ENST00000606933.1,ENST00000369054.2	chr1	150461439:150461563:150463076:150463201:150463869:150463987,	150463077	150463201	150463106	150463106	Frame_Shift_Del	G	-	p.L139fs
LIHC	TCGA-DD-A3A0-01	TARS2	ENST00000480070.1	chr1	150463933:150463987:150464886:150464965:150470005:150470063,	150464887	150464965	150464917	150464917	Frame_Shift_Del	C	-	p.G242fs
LIHC	TCGA-DD-A3A0-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150528672:150528842:150529096:150529269:150529414:150529526,	150529097	150529269	150529111	150529111	Frame_Shift_Del	G	-	p.G532fs
LIHC	TCGA-DD-A3A0-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000489159.1,ENST00000369039.5	chr1	150531762:150531942:150532236:150532381:150532535:150533143,	150532237	150532381	150532301	150532301	Frame_Shift_Del	C	-	p.T1003fs
LIHC	TCGA-DD-A3A0-01	GOLPH3L	ENST00000427665.1	chr1	150634289:150634404:150636107:150636239:150667131:150667326,150634289:150634404:150636107:150636239:150666583:150666649,	150636108	150636239	150636142	150636142	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-DD-A3A0-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000368995.4,ENST00000368993.2	chr1	150671029:150671210:150672587:150672659:150675785:150675869,	150672588	150672659	150672594	150672594	Frame_Shift_Del	C	-	p.G366fs
LIHC	TCGA-DD-A3A0-01	HORMAD1	ENST00000442853.1,ENST00000322343.7,ENST00000368987.1,ENST00000361824.2,ENST00000368995.4,ENST00000368993.2	chr1	150679105:150679285:150680731:150680883:150681369:150681437,	150680732	150680883	150680744	150680744	Frame_Shift_Del	A	-	p.Y180fs
LIHC	TCGA-DD-A3A0-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000476530.1,ENST00000368993.2	chr1	150686560:150686597:150687090:150687154:150689613:150689758,	150687091	150687154	150687121	150687121	Frame_Shift_Del	T	-	p.N71fs
LIHC	TCGA-DD-A3A0-01	CTSS	ENST00000448301.2,ENST00000368985.3	chr1	150720271:150720355:150722481:150722647:150724256:150724310,	150722482	150722647	150722621	150722621	Frame_Shift_Del	T	-	p.K218fs
LIHC	TCGA-DD-A3A0-01	CTSK	ENST00000480670.1	chr1	150776516:150776715:150778336:150778492:150779161:150779244,	150778337	150778492	150778341	150778341	Frame_Shift_Del	T	-	p.N132fs
LIHC	TCGA-DD-A3A0-01	BNIPL	ENST00000295294.7	chr1	151009090:151009242:151009790:151010138:151010979:151011044,	151009791	151010138	151010133	151010133	Frame_Shift_Del	C	-	p.F44fs
LIHC	TCGA-DD-A3A0-01	GABPB2	ENST00000368917.1,ENST00000368918.3,ENST00000462520.1,ENST00000486076.1,ENST00000368916.1	chr1	151062881:151063049:151065667:151065862:151070327:151070391,	151065668	151065862	151065797	151065797	Frame_Shift_Del	T	-	p.F136fs
LIHC	TCGA-DD-A3A0-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368912.3,ENST00000368913.3	chr1	151107273:151107351:151107638:151107785:151108066:151108240,	151107639	151107785	151107697	151107697	Frame_Shift_Del	A	-	p.S508fs
LIHC	TCGA-DD-A3A0-01	SEMA6C	ENST00000341697.3,ENST00000368914.3,ENST00000368913.3	chr1	151110484:151110581:151110791:151110882:151111105:151111159,	151110792	151110882	151110829	151110829	Frame_Shift_Del	G	-	p.P170fs
LIHC	TCGA-DD-A3A0-01	SCNM1	ENST00000368902.1,ENST00000602841.1,ENST00000461862.1,ENST00000368905.4	chr1	151138946:151139017:151139409:151139498:151139596:151139694,	151139410	151139498	151139428	151139428	Frame_Shift_Del	C	-	p.C47fs
LIHC	TCGA-DD-A3A0-01	TMOD4	ENST00000416280.2,ENST00000295314.4	chr1	151143395:151143539:151143908:151144016:151144108:151144239,	151143909	151144016	151143918	151143918	Frame_Shift_Del	G	-	p.P170fs
LIHC	TCGA-DD-A3A0-01	PIP5K1A	ENST00000368888.4,ENST00000349792.5,ENST00000409426.1,ENST00000441902.2	chr1	151212430:151212515:151214598:151214745:151214913:151215043,	151214599	151214745	151214700	151214700	Frame_Shift_Del	G	-	p.G477fs
LIHC	TCGA-DD-A3A0-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261079	151261079	Frame_Shift_Del	C	-	p.P732fs
LIHC	TCGA-DD-A3A0-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261124	151261124	Frame_Shift_Del	A	-	p.N746fs
LIHC	TCGA-DD-A3A0-01	PI4KB	ENST00000368874.4,ENST00000368875.2,ENST00000271657.5,ENST00000529142.1,ENST00000368873.1,ENST00000368872.1	chr1	151274319:151274443:151274669:151274774:151276016:151276126,	151274670	151274774	151274729	151274729	Frame_Shift_Del	T	-	p.K534fs
LIHC	TCGA-DD-A3A0-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288659	151288659	Frame_Shift_Del	T	-	p.E113fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000455397.1	chr1	151338243:151338322:151338750:151338929:151339197:151339310,151338243:151338322:151338750:151338929:151340674:151340795,	151338751	151338929	151338807	151338807	Frame_Shift_Del	G	-	p.Q199fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000474352.1	chr1	151338147:151338160:151338243:151338929:151339197:151339380,	151338244	151338929	151338807	151338807	Frame_Shift_Del	G	-	p.Q199fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000498494.1,ENST00000423070.1,ENST00000427977.2,ENST00000473693.1,ENST00000368868.5,ENST00000427867.2,ENST00000426705.2,ENST00000455397.1,ENST00000443708.1,ENST00000435071.1	chr1	151340674:151340795:151341917:151342030:151342188:151342245,151341543:151341665:151341917:151342030:151342188:151342245,	151341918	151342030	151341939	151341939	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000470345.1,ENST00000474352.1	chr1	151340674:151340795:151341479:151342245:151345113:151345159,	151341480	151342245	151341939	151341939	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000458566.1	chr1	151341543:151341665:151341917:151341982:151342188:151342245,	151341918	151341982	151341939	151341939	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A3A0-01	SELENBP1	ENST00000492643.1,ENST00000493560.1,ENST00000463664.1	chr1	151340674:151340795:151341479:151342030:151342188:151342245,	151341480	151342030	151341939	151341939	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A3A0-01	SNX27	ENST00000482791.1,ENST00000368843.3,ENST00000458013.2,ENST00000368838.1,ENST00000368841.2	chr1	151634719:151634746:151638408:151638487:151640947:151641111,	151638409	151638487	151638454	151638454	Frame_Shift_Del	T	-	p.F318fs
LIHC	TCGA-DD-A3A0-01	THEM5	ENST00000368817.5	chr1	151819757:151819890:151820213:151820338:151820657:151820768,	151820214	151820338	151820329	151820329	Frame_Shift_Del	G	-	p.P195fs
LIHC	TCGA-DD-A3A0-01	PGLYRP4	ENST00000359650.5	chr1	153315565:153315684:153317644:153317858:153318577:153318667,	153317645	153317858	153317811	153317811	Frame_Shift_Del	C	-	p.A59fs
LIHC	TCGA-DD-A3A0-01	PGLYRP4	ENST00000368739.3	chr1	153315565:153315684:153317644:153317846:153318577:153318667,	153317645	153317846	153317811	153317811	Frame_Shift_Del	C	-	p.A59fs
LIHC	TCGA-DD-A3A0-01	PGLYRP4	ENST00000359650.5	chr1	153315565:153315684:153317644:153317858:153318577:153318667,	153317645	153317858	153317851	153317851	Frame_Shift_Del	G	-	p.P49fs
LIHC	TCGA-DD-A3A0-01	S100A2	ENST00000368707.4	chr1	153534052:153534067:153535890:153536012:153536209:153536329,	153535891	153536012	153535923	153535923	Frame_Shift_Del	C	-	p.G77fs
LIHC	TCGA-DD-A3A0-01	CHTOP	ENST00000403433.1	chr1	153606555:153606819:153609047:153609129:153610770:153610924,	153609048	153609129	153609097	153609097	Frame_Shift_Del	A	-	p.L11fs
LIHC	TCGA-DD-A3A0-01	CHTOP	ENST00000368694.3,ENST00000368687.1	chr1	153614721:153614905:153615702:153615840:153617539:153617946,	153615703	153615840	153615792	153615792	Frame_Shift_Del	G	-	p.G166fs
LIHC	TCGA-DD-A3A0-01	ILF2	ENST00000368681.1	chr1	153642311:153642354:153642646:153642706:153643393:153643458,	153642647	153642706	153642679	153642679	Frame_Shift_Del	C	-	p.G11fs
LIHC	TCGA-DD-A3A0-01	INTS3	ENST00000503133.1	chr1	153730112:153730239:153734045:153734152:153735203:153735316,	153734046	153734152	153734056	153734056	Frame_Shift_Del	C	-	p.P268fs
LIHC	TCGA-DD-A3A0-01	INTS3	ENST00000476843.1,ENST00000368669.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000368670.1,ENST00000512605.1,ENST00000481797.1,ENST00000503133.1	chr1	153740149:153740303:153741368:153741437:153742244:153742320,	153741369	153741437	153741379	153741379	Frame_Shift_Del	A	-	p.E546fs
LIHC	TCGA-DD-A3A0-01	SLC27A3	ENST00000532853.1	chr1	153750987:153751029:153751321:153751361:153751589:153751687,	153751322	153751361	153751323	153751323	Frame_Shift_Del	T	-	p.G664fs
LIHC	TCGA-DD-A3A0-01	SLC27A3	ENST00000524676.1	chr1	153750987:153751029:153751233:153751361:153751589:153751687,	153751234	153751361	153751323	153751323	Frame_Shift_Del	T	-	p.G664fs
LIHC	TCGA-DD-A3A0-01	SLC27A3	ENST00000368661.3,ENST00000458027.1,ENST00000271857.2,ENST00000484014.1	chr1	153750987:153751029:153751162:153751361:153751589:153751687,	153751163	153751361	153751323	153751323	Frame_Shift_Del	T	-	p.G664fs
LIHC	TCGA-DD-A3A0-01	DENND4B	ENST00000492898.1	chr1	153903014:153903079:153903167:153903540:153904679:153904731,	153903168	153903540	153903279	153903279	Frame_Shift_Del	A	-	p.L1390fs
LIHC	TCGA-DD-A3A0-01	DENND4B	ENST00000361217.4	chr1	153903014:153903079:153903167:153903333:153903422:153903540,	153903168	153903333	153903279	153903279	Frame_Shift_Del	A	-	p.L1390fs
LIHC	TCGA-DD-A3A0-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153914404:153914589:153915031:153915101:153915353:153915557,153914662:153914832:153915031:153915101:153915353:153915557,	153915032	153915101	153915097	153915097	Frame_Shift_Del	C	-	p.G192fs
LIHC	TCGA-DD-A3A0-01	CRTC2	ENST00000368630.3,ENST00000487235.1,ENST00000368633.1,ENST00000303569.6	chr1	153920153:153920805:153920933:153921120:153921590:153921860,	153920934	153921120	153921068	153921068	Frame_Shift_Del	G	-	p.P576fs
LIHC	TCGA-DD-A3A0-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934781	153934781	Frame_Shift_Del	C	-	p.G78fs
LIHC	TCGA-DD-A3A0-01	CREB3L4	ENST00000468845.1	chr1	153941871:153941931:153945219:153945554:153945670:153945739,	153945220	153945554	153945462	153945462	Frame_Shift_Del	C	-	p.V217fs
LIHC	TCGA-DD-A3A0-01	CREB3L4	ENST00000368603.1,ENST00000271889.4,ENST00000368607.3,ENST00000368600.3,ENST00000405694.3	chr1	153945219:153945312:153945447:153945554:153945670:153945739,	153945448	153945554	153945462	153945462	Frame_Shift_Del	C	-	p.V217fs
LIHC	TCGA-DD-A3A0-01	JTB	ENST00000471173.1	chr1	153948314:153948381:153949168:153949398:153949814:153949870,153948314:153948381:153949168:153949398:153949645:153949747,	153949169	153949398	153949211	153949211	Frame_Shift_Del	A	-	p.F54fs
LIHC	TCGA-DD-A3A0-01	JTB	ENST00000356648.1,ENST00000368589.1	chr1	153948314:153948381:153949168:153949489:153949645:153949747,	153949169	153949489	153949211	153949211	Frame_Shift_Del	A	-	p.F54fs
LIHC	TCGA-DD-A3A0-01	JTB	ENST00000271843.4,ENST00000461365.1	chr1	153948314:153948381:153949168:153949251:153949451:153949489,	153949169	153949251	153949211	153949211	Frame_Shift_Del	A	-	p.F54fs
LIHC	TCGA-DD-A3A0-01	RAB13	ENST00000495720.1,ENST00000368575.3	chr1	153954866:153954920:153955010:153955076:153955194:153955284,	153955011	153955076	153955048	153955048	Frame_Shift_Del	A	-	p.F148fs
LIHC	TCGA-DD-A3A0-01	C1orf43	ENST00000368518.1,ENST00000368519.1	chr1	154186932:154187050:154192311:154192413:154192817:154193009,	154192312	154192413	154192377	154192377	Frame_Shift_Del	T	-	p.I35fs
LIHC	TCGA-DD-A3A0-01	UBAP2L	ENST00000437652.1	chr1	154201090:154201201:154207066:154207214:154207671:154207767,	154207067	154207214	154207074	154207074	Frame_Shift_Del	G	-	p.W96fs
LIHC	TCGA-DD-A3A0-01	UBAP2L	ENST00000428931.1,ENST00000343815.6,ENST00000456325.1,ENST00000441890.1,ENST00000412596.1,ENST00000361546.2	chr1	154201090:154201201:154207066:154207235:154207671:154207767,	154207067	154207235	154207074	154207074	Frame_Shift_Del	G	-	p.W96fs
LIHC	TCGA-DD-A3A0-01	UBAP2L	ENST00000271877.7,ENST00000368504.1	chr1	154201090:154201201:154207066:154207268:154207671:154207767,	154207067	154207268	154207074	154207074	Frame_Shift_Del	G	-	p.W96fs
LIHC	TCGA-DD-A3A0-01	UBAP2L	ENST00000271877.7,ENST00000428931.1,ENST00000343815.6,ENST00000361546.2	chr1	154223956:154224129:154226375:154226565:154227311:154227366,	154226376	154226565	154226539	154226539	Frame_Shift_Del	C	-	p.P610fs
LIHC	TCGA-DD-A3A0-01	UBAP2L	ENST00000271877.7,ENST00000465855.1,ENST00000428931.1,ENST00000343815.6,ENST00000433615.1,ENST00000428595.1,ENST00000361546.2,ENST00000475373.1	chr1	154232423:154232505:154233367:154233585:154234067:154234173,	154233368	154233585	154233433	154233433	Frame_Shift_Del	C	-	p.P882fs
LIHC	TCGA-DD-A3A0-01	ATP8B2	ENST00000368489.3	chr1	154317797:154318021:154318275:154318359:154318706:154318952,	154318276	154318359	154318344	154318344	Frame_Shift_Del	G	-	p.M954fs
LIHC	TCGA-DD-A3A0-01	ADAM15	ENST00000271836.6,ENST00000368413.1,ENST00000368412.3,ENST00000526491.1,ENST00000355956.2,ENST00000461564.2,ENST00000498481.2,ENST00000531455.1,ENST00000527418.1,ENST00000356955.2,ENST00000360674.4,ENST00000359280.4,ENST00000529473.1,ENST00000368410.2,ENST00000472434.1,ENST00000461234.1,ENST00000449910.2	chr1	155030721:155030917:155031185:155031263:155032377:155032450,	155031186	155031263	155031261	155031261	Frame_Shift_Del	G	-	p.G665fs
LIHC	TCGA-DD-A3A0-01	ADAM15	ENST00000271836.6,ENST00000368413.1,ENST00000526491.1,ENST00000462116.1,ENST00000355956.2,ENST00000461564.2,ENST00000498481.2,ENST00000531455.1,ENST00000527418.1,ENST00000356955.2,ENST00000359280.4,ENST00000529473.1,ENST00000368410.2,ENST00000472434.1,ENST00000461234.1,ENST00000449910.2	chr1	155032377:155032450:155032680:155032819:155034720:155034845,155032377:155032450:155032680:155032819:155033238:155033308,	155032681	155032819	155032701	155032701	Frame_Shift_Del	G	-	p.G697fs
LIHC	TCGA-DD-A3A0-01	SLC50A1	ENST00000475824.1,ENST00000488609.1,ENST00000368404.4	chr1	155108774:155108852:155110036:155110198:155110454:155110570,155109303:155109427:155110036:155110198:155110454:155110570,	155110037	155110198	155110070	155110070	Frame_Shift_Del	G	-	p.G106fs
LIHC	TCGA-DD-A3A0-01	SLC50A1	ENST00000490770.1	chr1	155109303:155109427:155110054:155110198:155110454:155110570,	155110055	155110198	155110070	155110070	Frame_Shift_Del	G	-	p.G106fs
LIHC	TCGA-DD-A3A0-01	SLC50A1	ENST00000475824.1,ENST00000488609.1,ENST00000368404.4	chr1	155108774:155108852:155110036:155110198:155110454:155110570,155109303:155109427:155110036:155110198:155110454:155110570,	155110037	155110198	155110097	155110097	Frame_Shift_Del	T	-	p.F115fs
LIHC	TCGA-DD-A3A0-01	SLC50A1	ENST00000490770.1	chr1	155109303:155109427:155110054:155110198:155110454:155110570,	155110055	155110198	155110097	155110097	Frame_Shift_Del	T	-	p.F115fs
LIHC	TCGA-DD-A3A0-01	THBS3	ENST00000457183.2,ENST00000541576.1,ENST00000368378.3,ENST00000541990.1,ENST00000469769.1	chr1	155165635:155165690:155165777:155165917:155166831:155167000,	155165778	155165917	155165845	155165845	Frame_Shift_Del	C	-	p.G915fs
LIHC	TCGA-DD-A3A0-01	GBA	ENST00000427500.3	chr1	155208354:155208441:155209676:155209868:155210420:155210508,	155209677	155209868	155209781	155209781	Frame_Shift_Del	G	-	p.P68fs
LIHC	TCGA-DD-A3A0-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155264272:155264543:155264906:155265093:155265227:155265359,	155264907	155265093	155264957	155264957	Frame_Shift_Del	C	-	p.G184fs
LIHC	TCGA-DD-A3A0-01	FDPS	ENST00000368356.4	chr1	155278775:155278867:155279579:155279756:155279833:155279996,155278704:155278756:155279579:155279756:155279833:155279996,	155279580	155279756	155279584	155279584	Frame_Shift_Del	C	-	p.P2fs
LIHC	TCGA-DD-A3A0-01	FDPS	ENST00000491013.1	chr1	155278775:155278867:155279543:155279756:155279833:155279996,155278704:155278756:155279543:155279756:155279833:155279996,	155279544	155279756	155279584	155279584	Frame_Shift_Del	C	-	p.P2fs
LIHC	TCGA-DD-A3A0-01	FDPS	ENST00000368356.4	chr1	155278775:155278867:155279579:155279756:155279833:155279996,155278704:155278756:155279579:155279756:155279833:155279996,	155279580	155279756	155279610	155279610	Frame_Shift_Del	G	-	p.V10fs
LIHC	TCGA-DD-A3A0-01	FDPS	ENST00000491013.1	chr1	155278775:155278867:155279543:155279756:155279833:155279996,155278704:155278756:155279543:155279756:155279833:155279996,	155279544	155279756	155279610	155279610	Frame_Shift_Del	G	-	p.V10fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155309118:155309159:155311726:155311893:155313104:155313277,	155311727	155311893	155311757	155311757	Frame_Shift_Del	G	-	p.P2815fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155319117:155319250:155319332:155319387:155322496:155322649,	155319333	155319387	155319339	155319339	Frame_Shift_Del	T	-	p.K2479fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408569	155408569	Frame_Shift_Del	G	-	p.H1794fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155447783	155447783	Frame_Shift_Del	T	-	p.K1626fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450003	155450003	Frame_Shift_Del	A	-	p.F886fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451393	155451393	Frame_Shift_Del	T	-	p.N423fs
LIHC	TCGA-DD-A3A0-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491186	155491186	Frame_Shift_Del	T	-	p.N42fs
LIHC	TCGA-DD-A3A0-01	YY1AP1	ENST00000436865.1,ENST00000295566.4,ENST00000405763.3,ENST00000407221.1,ENST00000438245.2,ENST00000368339.5,ENST00000476093.1,ENST00000361831.5,ENST00000368330.2,ENST00000359205.5,ENST00000311573.5,ENST00000454523.1,ENST00000347088.5,ENST00000354691.5,ENST00000404643.1,ENST00000355499.4,ENST00000368340.5,ENST00000493625.1,ENST00000443231.1	chr1	155642350:155642518:155644800:155644887:155646338:155646462,155642350:155642522:155644800:155644887:155646338:155646462,	155644801	155644887	155644840	155644840	Frame_Shift_Del	G	-	p.P262fs
LIHC	TCGA-DD-A3A0-01	YY1AP1	ENST00000295566.4,ENST00000405763.3,ENST00000476027.1,ENST00000438245.2,ENST00000368339.5,ENST00000361140.4,ENST00000454523.1,ENST00000354691.5,ENST00000404643.1,ENST00000355499.4,ENST00000368340.5	chr1	155649718:155649799:155650206:155650247:155657861:155657992,155649199:155649303:155650206:155650247:155658449:155658477,155649199:155649303:155650206:155650247:155658720:155658764,155649199:155649303:155650206:155650247:155657861:155657992,	155650207	155650247	155650224	155650224	Frame_Shift_Del	C	-	p.E140fs
LIHC	TCGA-DD-A3A0-01	YY1AP1	ENST00000407221.1,ENST00000311573.5	chr1	155649199:155649303:155650172:155650247:155657861:155657992,	155650173	155650247	155650224	155650224	Frame_Shift_Del	C	-	p.E140fs
LIHC	TCGA-DD-A3A0-01	DAP3	ENST00000465375.1,ENST00000462002.1,ENST00000471523.1,ENST00000343043.3,ENST00000368336.5,ENST00000497826.1,ENST00000496863.1,ENST00000471214.1,ENST00000463575.1	chr1	155679563:155679615:155686796:155686919:155691307:155691409,	155686797	155686919	155686811	155686811	Frame_Shift_Del	T	-	p.R20fs
LIHC	TCGA-DD-A3A0-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735992	155735992	Frame_Shift_Del	A	-	p.L1092fs
LIHC	TCGA-DD-A3A0-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000467009.1,ENST00000437809.1,ENST00000361040.5,ENST00000271883.5	chr1	155774739:155774932:155783424:155783595:155784120:155784240,	155783425	155783595	155783531	155783531	Frame_Shift_Del	G	-	p.P452fs
LIHC	TCGA-DD-A3A0-01	RIT1	ENST00000461050.1	chr1	155880240:155880297:155880446:155880595:155880668:155880706,155880240:155880297:155880446:155880595:155881033:155881135,	155880447	155880595	155880562	155880562	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-DD-A3A0-01	ARHGEF2	ENST00000368316.1,ENST00000361247.4,ENST00000313695.7,ENST00000313667.4,ENST00000368315.4,ENST00000470975.2,ENST00000462460.2	chr1	155924692:155924760:155927503:155927673:155928110:155928187,	155927504	155927673	155927602	155927602	Frame_Shift_Del	A	-	p.F511fs
LIHC	TCGA-DD-A3A0-01	ARHGEF2	ENST00000368316.1,ENST00000361247.4,ENST00000313695.7,ENST00000313667.4,ENST00000368315.4,ENST00000474428.2,ENST00000462460.2	chr1	155928110:155928187:155931451:155931700:155931895:155932013,	155931452	155931700	155931534	155931534	Frame_Shift_Del	G	-	p.P434fs
LIHC	TCGA-DD-A3A0-01	SSR2	ENST00000484320.2,ENST00000529008.1,ENST00000472898.1,ENST00000466905.1,ENST00000532074.1,ENST00000368311.1,ENST00000474377.1,ENST00000531790.1,ENST00000480176.1	chr1	155981600:155981678:155989803:155989958:155990678:155990694,155988060:155988159:155989803:155989958:155990678:155990694,	155989804	155989958	155989911	155989911	Frame_Shift_Del	T	-	p.Q16fs
LIHC	TCGA-DD-A3A0-01	RAB25	ENST00000473336.1,ENST00000487325.1	chr1	156035701:156035897:156038060:156038254:156039461:156039542,156031173:156031234:156038060:156038254:156039461:156039542,	156038061	156038254	156038190	156038190	Frame_Shift_Del	G	-	p.V123fs
LIHC	TCGA-DD-A3A0-01	SEMA4A	ENST00000368285.3,ENST00000435124.1,ENST00000355014.2,ENST00000368286.2,ENST00000368282.1,ENST00000438830.1	chr1	156124340:156124508:156126204:156126365:156127860:156127923,	156126205	156126365	156126254	156126254	Frame_Shift_Del	T	-	p.D63fs
LIHC	TCGA-DD-A3A0-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156142616:156142797:156144612:156144731:156144876:156145023,	156144613	156144731	156144645	156144645	Frame_Shift_Del	G	-	p.G450fs
LIHC	TCGA-DD-A3A0-01	SEMA4A	ENST00000368284.1,ENST00000368285.3,ENST00000355014.2,ENST00000368286.2,ENST00000487358.1,ENST00000368282.1,ENST00000462892.1	chr1	156142616:156142797:156144612:156144731:156144876:156145023,	156144613	156144731	156144721	156144721	Frame_Shift_Del	C	-	p.A475fs
LIHC	TCGA-DD-A3A0-01	PAQR6	ENST00000340183.5,ENST00000491107.1	chr1	156214564:156214702:156214932:156215029:156215325:156215387,156214564:156214702:156214932:156215029:156215572:156215586,	156214933	156215029	156214962	156214962	Frame_Shift_Del	G	-	p.L88fs
LIHC	TCGA-DD-A3A0-01	PAQR6	ENST00000480773.1	chr1	156214564:156214702:156214932:156215068:156215572:156215586,	156214933	156215068	156214962	156214962	Frame_Shift_Del	G	-	p.L88fs
LIHC	TCGA-DD-A3A0-01	PAQR6	ENST00000340183.5,ENST00000491107.1	chr1	156214564:156214702:156214932:156215029:156215325:156215387,156214564:156214702:156214932:156215029:156215572:156215586,	156214933	156215029	156215005	156215005	Frame_Shift_Del	C	-	p.G73fs
LIHC	TCGA-DD-A3A0-01	PAQR6	ENST00000480773.1	chr1	156214564:156214702:156214932:156215068:156215572:156215586,	156214933	156215068	156215005	156215005	Frame_Shift_Del	C	-	p.G73fs
LIHC	TCGA-DD-A3A0-01	SMG5	ENST00000361813.5	chr1	156219823:156220461:156220648:156220787:156221193:156221268,	156220649	156220787	156220673	156220673	Frame_Shift_Del	G	-	p.P981fs
LIHC	TCGA-DD-A3A0-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255288	156255288	Frame_Shift_Del	C	-	p.P92fs
LIHC	TCGA-DD-A3A0-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255288	156255288	Frame_Shift_Del	C	-	p.P92fs
LIHC	TCGA-DD-A3A0-01	CCT3	ENST00000368258.3,ENST00000368261.3,ENST00000472765.2,ENST00000295688.3,ENST00000368262.3,ENST00000368259.2	chr1	156280348:156280480:156280740:156280986:156281831:156282012,	156280741	156280986	156280791	156280791	Frame_Shift_Del	G	-	p.L451fs
LIHC	TCGA-DD-A3A0-01	RHBG	ENST00000368246.2,ENST00000368247.1,ENST00000368249.1,ENST00000255013.3,ENST00000446171.1,ENST00000466013.1	chr1	156347153:156347278:156347780:156347931:156348042:156348190,	156347781	156347931	156347805	156347805	Frame_Shift_Del	G	-	p.A64fs
LIHC	TCGA-DD-A3A0-01	RHBG	ENST00000400992.2,ENST00000544720.1,ENST00000368245.3,ENST00000451864.2	chr1	156347153:156347278:156347780:156348190:156351137:156351304,	156347781	156348190	156347805	156347805	Frame_Shift_Del	G	-	p.A64fs
LIHC	TCGA-DD-A3A0-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351880	156351880	Frame_Shift_Del	A	-	p.K302fs
LIHC	TCGA-DD-A3A0-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351924	156351924	Frame_Shift_Del	G	-	p.P316fs
LIHC	TCGA-DD-A3A0-01	MEF2D	ENST00000360595.3,ENST00000368240.2,ENST00000348159.4	chr1	156449081:156449138:156449377:156449588:156452228:156452432,156449081:156449138:156449377:156449588:156450625:156450763,	156449378	156449588	156449441	156449441	Frame_Shift_Del	G	-	p.Q183fs
LIHC	TCGA-DD-A3A0-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156503800:156503933:156504292:156504525:156504954:156505039,	156504293	156504525	156504402	156504402	Frame_Shift_Del	C	-	p.A1211fs
LIHC	TCGA-DD-A3A0-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156503800:156503933:156504292:156504525:156504954:156505039,	156504293	156504525	156504420	156504420	Frame_Shift_Del	G	-	p.Q1205fs
LIHC	TCGA-DD-A3A0-01	TTC24	ENST00000368237.3,ENST00000368236.3	chr1	156555504:156555618:156555740:156555837:156556260:156556562,	156555741	156555837	156555823	156555823	Frame_Shift_Del	C	-	p.G551fs
LIHC	TCGA-DD-A3A0-01	GPATCH4	ENST00000438976.2,ENST00000531129.1,ENST00000368232.4	chr1	156565872:156565923:156566178:156566270:156568018:156568111,156565872:156565923:156566178:156566270:156567826:156567913,	156566179	156566270	156566196	156566196	Frame_Shift_Del	C	-	p.G136fs
LIHC	TCGA-DD-A3A0-01	GPATCH4	ENST00000463513.1,ENST00000531900.1,ENST00000506832.2,ENST00000474904.1,ENST00000498756.1,ENST00000415314.2	chr1	156568018:156568111:156568759:156568896:156571200:156571254,156568212:156568286:156568759:156568896:156571200:156571254,	156568760	156568896	156568825	156568825	Frame_Shift_Del	G	-	p.P5fs
LIHC	TCGA-DD-A3A0-01	HAPLN2	ENST00000456112.1,ENST00000255039.1	chr1	156593258:156593367:156593598:156593952:156594142:156594259,	156593599	156593952	156593799	156593799	Frame_Shift_Del	C	-	p.P96fs
LIHC	TCGA-DD-A3A0-01	BCAN	ENST00000329117.5	chr1	156621247:156621481:156622039:156622684:156626073:156626181,	156622040	156622684	156622114	156622114	Frame_Shift_Del	A	-	p.K458fs
LIHC	TCGA-DD-A3A0-01	BCAN	ENST00000329117.5	chr1	156622606:156622684:156626073:156626181:156626729:156626832,	156626074	156626181	156626084	156626084	Frame_Shift_Del	C	-	p.V651fs
LIHC	TCGA-DD-A3A0-01	RRNAD1	ENST00000368216.4	chr1	156703168:156703312:156703800:156704285:156705516:156705592,	156703801	156704285	156703910	156703910	Frame_Shift_Del	G	-	p.R249fs
LIHC	TCGA-DD-A3A0-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708319	156708319	Frame_Shift_Del	C	-	p.D60fs
LIHC	TCGA-DD-A3A0-01	PRCC	ENST00000271526.4,ENST00000491853.1	chr1	156752077:156752121:156756399:156756966:156764456:156764596,156752077:156752121:156756399:156756966:156761488:156761584,	156756400	156756966	156756497	156756497	Frame_Shift_Del	C	-	p.S205fs
LIHC	TCGA-DD-A3A0-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761553	156761553	Frame_Shift_Del	C	-	p.A383fs
LIHC	TCGA-DD-A3A0-01	NTRK1	ENST00000368196.3,ENST00000524377.1,ENST00000534682.1,ENST00000497019.2,ENST00000392302.2	chr1	156844697:156844800:156845311:156845458:156845871:156845991,	156845312	156845458	156845436	156845436	Frame_Shift_Del	C	-	p.N487fs
LIHC	TCGA-DD-A3A0-01	NTRK1	ENST00000530298.1	chr1	156844697:156844800:156845311:156846002:156846191:156846364,	156845312	156846002	156845436	156845436	Frame_Shift_Del	C	-	p.N487fs
LIHC	TCGA-DD-A3A0-01	PEAR1	ENST00000292357.7,ENST00000455314.1	chr1	156871979:156872077:156873709:156873819:156874539:156874644,156863522:156863629:156873709:156873819:156874539:156874644,	156873710	156873819	156873737	156873737	Frame_Shift_Del	C	-	p.P7fs
LIHC	TCGA-DD-A3A0-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2	chr1	156914810:156914989:156915836:156915954:156916453:156916579,	156915837	156915954	156915930	156915930	Frame_Shift_Del	G	-	p.R908fs
LIHC	TCGA-DD-A3A0-01	FCRL5	ENST00000361835.3,ENST00000368190.3,ENST00000368189.3	chr1	157516002:157516070:157516732:157516987:157519349:157519370,157514620:157514872:157516732:157516987:157519349:157519370,	157516733	157516987	157516848	157516848	Frame_Shift_Del	T	-	p.K64fs
LIHC	TCGA-DD-A3A0-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A3A0-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A3A0-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666960	157666960	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A3A0-01	FCRL2	ENST00000368178.3,ENST00000361516.3	chr1	157718342:157718408:157718664:157718750:157719439:157719467,	157718665	157718750	157718700	157718700	Frame_Shift_Del	G	-	p.P453fs
LIHC	TCGA-DD-A3A0-01	FCRL1	ENST00000368175.3	chr1	157769847:157769875:157771250:157771381:157771704:157771757,	157771251	157771381	157771254	157771254	Frame_Shift_Del	T	-	p.I334fs
LIHC	TCGA-DD-A3A0-01	FCRL1	ENST00000368176.3,ENST00000491942.1	chr1	157769847:157769875:157771250:157771367:157771704:157771757,	157771251	157771367	157771254	157771254	Frame_Shift_Del	T	-	p.I334fs
LIHC	TCGA-DD-A3A0-01	FCRL1	ENST00000368176.3,ENST00000358292.3,ENST00000491942.1,ENST00000368175.3	chr1	157772404:157772454:157773634:157773901:157776891:157776912,	157773635	157773901	157773747	157773747	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-DD-A3A0-01	PYHIN1	ENST00000368138.3,ENST00000368140.1	chr1	158914664:158914832:158943436:158943561:158946490:158946518,	158943437	158943561	158943504	158943504	Frame_Shift_Del	C	-	p.A476fs
LIHC	TCGA-DD-A3A0-01	IFI16	ENST00000430894.2,ENST00000359709.3	chr1	158985667:158985777:158988018:158988441:158990130:158990319,	158988019	158988441	158988142	158988142	Frame_Shift_Del	A	-	p.K226fs
LIHC	TCGA-DD-A3A0-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000295809.7	chr1	159002313:159002481:159015086:159015254:159021468:159021732,159002319:159002481:159015086:159015254:159019221:159019389,	159015087	159015254	159015108	159015108	Frame_Shift_Del	A	-	p.K451fs
LIHC	TCGA-DD-A3A0-01	FCRL6	ENST00000368106.3	chr1	159784010:159784082:159785217:159785249:159785330:159785382,159784010:159784082:159785217:159785249:159785325:159785451,	159785218	159785249	159785240	159785240	Frame_Shift_Del	G	-	p.V397fs
LIHC	TCGA-DD-A3A0-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898350	159898350	Frame_Shift_Del	G	-	p.P943fs
LIHC	TCGA-DD-A3A0-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898656	159898656	Frame_Shift_Del	G	-	p.P841fs
LIHC	TCGA-DD-A3A0-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912774	159912774	Frame_Shift_Del	G	-	p.R76fs
LIHC	TCGA-DD-A3A0-01	SLAMF9	ENST00000368093.3	chr1	159921281:159921656:159922051:159922324:159923098:159923439,	159922052	159922324	159922101	159922101	Frame_Shift_Del	G	-	p.P205fs
LIHC	TCGA-DD-A3A0-01	SLAMF9	ENST00000368093.3	chr1	159921281:159921656:159922051:159922324:159923098:159923439,	159922052	159922324	159922196	159922196	Frame_Shift_Del	C	-	p.D174fs
LIHC	TCGA-DD-A3A0-01	IGSF8	ENST00000314485.7,ENST00000368086.1	chr1	160062361:160062485:160062713:160063121:160063499:160063961,	160062714	160063121	160062964	160062964	Frame_Shift_Del	C	-	p.G354fs
LIHC	TCGA-DD-A3A0-01	IGSF8	ENST00000368086.1,ENST00000448417.1	chr1	160063549:160063961:160064658:160065036:160068198:160068307,	160064659	160065036	160064894	160064894	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-DD-A3A0-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160268634:160268781:160268891:160269054:160275222:160275361,	160268892	160269054	160268901	160268901	Frame_Shift_Del	T	-	p.K607fs
LIHC	TCGA-DD-A3A0-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160276244:160276283:160276952:160277035:160278890:160278966,	160276953	160277035	160277032	160277032	Frame_Shift_Del	G	-	p.P408fs
LIHC	TCGA-DD-A3A0-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160293220:160293320:160295332:160295442:160302237:160302347,	160295333	160295442	160295380	160295380	Frame_Shift_Del	C	-	p.V187fs
LIHC	TCGA-DD-A3A0-01	SLAMF1	ENST00000235739.5	chr1	160589565:160589639:160604402:160604687:160606980:160607319,	160604403	160604687	160604595	160604595	Frame_Shift_Del	C	-	p.D170fs
LIHC	TCGA-DD-A3A0-01	SLAMF1	ENST00000355199.3,ENST00000538290.1,ENST00000235739.5	chr1	160604402:160604687:160606980:160607319:160616659:160616811,	160606981	160607319	160607277	160607277	Frame_Shift_Del	C	-	p.G40fs
LIHC	TCGA-DD-A3A0-01	ITLN1	ENST00000326245.3	chr1	160851746:160851994:160853217:160853316:160854609:160854673,	160853218	160853316	160853240	160853240	Frame_Shift_Del	T	-	p.K45fs
LIHC	TCGA-DD-A3A0-01	ARHGAP30	ENST00000461003.1,ENST00000368015.1,ENST00000490279.1,ENST00000368016.3,ENST00000368013.3	chr1	161019384:161019479:161021103:161021505:161022075:161022153,	161021104	161021505	161021229	161021229	Frame_Shift_Del	G	-	p.P432fs
LIHC	TCGA-DD-A3A0-01	ARHGAP30	ENST00000368015.1,ENST00000490279.1,ENST00000368016.3,ENST00000368013.3	chr1	161022075:161022153:161022229:161022333:161022415:161022587,	161022230	161022333	161022242	161022242	Frame_Shift_Del	C	-	p.A310fs
LIHC	TCGA-DD-A3A0-01	UFC1	ENST00000368003.5	chr1	161127406:161127483:161127910:161128001:161128201:161128299,	161127911	161128001	161127952	161127952	Frame_Shift_Del	G	-	p.W125fs
LIHC	TCGA-DD-A3A0-01	PPOX	ENST00000497522.1,ENST00000544598.1	chr1	161136629:161136724:161136889:161137024:161140409:161140559,	161136890	161137024	161136978	161136978	Frame_Shift_Del	G	-	p.R59fs
LIHC	TCGA-DD-A3A0-01	PPOX	ENST00000479246.1,ENST00000352210.5,ENST00000367999.4	chr1	161137160:161137276:161137784:161137917:161138782:161138973,161137160:161137276:161137784:161137917:161138221:161138335,	161137785	161137917	161137804	161137804	Frame_Shift_Del	C	-	p.P121fs
LIHC	TCGA-DD-A3A0-01	PPOX	ENST00000470607.1	chr1	161137884:161137917:161138782:161138973:161139449:161139510,	161138783	161138973	161138906	161138906	Frame_Shift_Del	G	-	p.R247fs
LIHC	TCGA-DD-A3A0-01	B4GALT3	ENST00000319769.5,ENST00000367998.1	chr1	161142016:161142121:161143394:161143517:161143648:161143839,	161143395	161143517	161143442	161143442	Frame_Shift_Del	G	-	p.P252fs
LIHC	TCGA-DD-A3A0-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681031	161681031	Frame_Shift_Del	T	-	p.V112fs
LIHC	TCGA-DD-A3A0-01	FCRLA	ENST00000540926.1,ENST00000367953.3,ENST00000367959.2,ENST00000236938.6	chr1	161680549:161680702:161680997:161681264:161682874:161683242,161680549:161680702:161680997:161681264:161681723:161682008,	161680998	161681264	161681031	161681031	Frame_Shift_Del	T	-	p.V112fs
LIHC	TCGA-DD-A3A0-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681126	161681126	Frame_Shift_Del	C	-	p.P145fs
LIHC	TCGA-DD-A3A0-01	FCRLA	ENST00000540926.1,ENST00000367953.3,ENST00000367959.2,ENST00000236938.6	chr1	161680549:161680702:161680997:161681264:161682874:161683242,161680549:161680702:161680997:161681264:161681723:161682008,	161680998	161681264	161681126	161681126	Frame_Shift_Del	C	-	p.P145fs
LIHC	TCGA-DD-A3A0-01	HSD17B7	ENST00000254521.3,ENST00000470195.2,ENST00000367917.3,ENST00000485405.1	chr1	162774056:162774113:162775183:162775282:162782087:162782316,	162775184	162775282	162775200	162775200	Frame_Shift_Del	A	-	p.Q239fs
LIHC	TCGA-DD-A3A0-01	PBX1	ENST00000340699.3	chr1	164528643:164528766:164528958:164529250:164532474:164532548,	164528959	164529250	164529096	164529096	Frame_Shift_Del	G	-	p.G13fs
LIHC	TCGA-DD-A3A0-01	MGST3	ENST00000367885.1	chr1	165601299:165601379:165601467:165601511:165619077:165619201,165600494:165600530:165601467:165601511:165619077:165619201,	165601468	165601511	165601480	165601480	Frame_Shift_Del	C	-	p.P2fs
LIHC	TCGA-DD-A3A0-01	MGST3	ENST00000477450.1,ENST00000367885.1,ENST00000367884.2,ENST00000367886.2,ENST00000367889.3,ENST00000495447.1,ENST00000367888.4,ENST00000367883.1	chr1	165619084:165619201:165620250:165620324:165621214:165621272,	165620251	165620324	165620293	165620293	Frame_Shift_Del	T	-	p.F54fs
LIHC	TCGA-DD-A3A0-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166818320	166818320	Frame_Shift_Del	C	-	p.Y168fs
LIHC	TCGA-DD-A3A0-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166818478	166818478	Frame_Shift_Del	C	-	p.A221fs
LIHC	TCGA-DD-A3A0-01	MPC2	ENST00000458574.1,ENST00000271373.4,ENST00000367846.4	chr1	167889248:167889328:167889784:167889869:167893734:167893775,	167889785	167889869	167889822	167889822	Frame_Shift_Del	T	-	p.K66fs
LIHC	TCGA-DD-A3A0-01	DCAF6	ENST00000367840.3,ENST00000432587.2	chr1	167973974:167974031:167985018:167985189:167992225:167992285,	167985019	167985189	167985021	167985021	Frame_Shift_Del	T	-	p.F461fs
LIHC	TCGA-DD-A3A0-01	ATP1B1	ENST00000494797.1,ENST00000499679.3,ENST00000367816.1,ENST00000367813.3,ENST00000367815.4	chr1	169080607:169080736:169094121:169094277:169096461:169096637,	169094122	169094277	169094260	169094260	Frame_Shift_Del	T	-	p.I122fs
LIHC	TCGA-DD-A3A0-01	NME7	ENST00000524967.1,ENST00000485609.1,ENST00000528517.1,ENST00000367811.3,ENST00000480478.1,ENST00000525440.1,ENST00000472647.1,ENST00000483228.1	chr1	169267842:169268001:169272382:169272433:169279207:169279309,	169272383	169272433	169272386	169272386	Frame_Shift_Del	A	-	p.F146fs
LIHC	TCGA-DD-A3A0-01	NME7	ENST00000485609.1	chr1	169279207:169279318:169293630:169293738:169336945:169336968,	169293631	169293738	169293657	169293657	Frame_Shift_Del	A	-	p.Y29fs
LIHC	TCGA-DD-A3A0-01	CCDC181	ENST00000545005.1,ENST00000491570.1,ENST00000367805.3,ENST00000367806.3	chr1	169388250:169388397:169390600:169391551:169394048:169394168,	169390601	169391551	169390953	169390953	Frame_Shift_Del	A	-	p.L239fs
LIHC	TCGA-DD-A3A0-01	SELE	ENST00000333360.7	chr1	169696879:169697068:169697198:169697387:169698326:169698515,	169697199	169697387	169697261	169697261	Frame_Shift_Del	C	-	p.G406fs
LIHC	TCGA-DD-A3A0-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169806067:169806253:169811557:169811680:169812814:169812910,	169811558	169811680	169811662	169811662	Frame_Shift_Del	T	-	p.A610fs
LIHC	TCGA-DD-A3A0-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169806067:169806253:169811557:169811680:169812814:169812910,	169811558	169811680	169811668	169811668	Frame_Shift_Del	A	-	p.L612fs
LIHC	TCGA-DD-A3A0-01	SCYL3	ENST00000367771.6,ENST00000423670.1	chr1	169823651:169824105:169828181:169828353:169831753:169831938,	169828182	169828353	169828217	169828217	Frame_Shift_Del	G	-	p.P426fs
LIHC	TCGA-DD-A3A0-01	FMO3	ENST00000367755.4,ENST00000392085.2,ENST00000542847.1,ENST00000538429.1	chr1	171079938:171080138:171083146:171083502:171085347:171085420,	171083147	171083502	171083315	171083315	Frame_Shift_Del	T	-	p.S332fs
LIHC	TCGA-DD-A3A0-01	FMO2	ENST00000441535.1	chr1	171154440:171154498:171154846:171154984:171162473:171162649,	171154847	171154984	171154982	171154982	Frame_Shift_Del	A	-	p.K44fs
LIHC	TCGA-DD-A3A0-01	FMO2	ENST00000529935.1	chr1	171162473:171162662:171165787:171165950:171168484:171168564,171162473:171162662:171165787:171165950:171173003:171173128,	171165788	171165950	171165944	171165944	Frame_Shift_Del	T	-	p.F160fs
LIHC	TCGA-DD-A3A0-01	FMO1	ENST00000433267.1,ENST00000367750.3,ENST00000354841.4	chr1	171227228:171227358:171236681:171236870:171244484:171244647,	171236682	171236870	171236823	171236823	Frame_Shift_Del	A	-	p.K92fs
LIHC	TCGA-DD-A3A0-01	FMO4	ENST00000367749.3,ENST00000462992.1	chr1	171293276:171293439:171300778:171300921:171301847:171302047,	171300779	171300921	171300871	171300871	Frame_Shift_Del	G	-	p.G193fs
LIHC	TCGA-DD-A3A0-01	PRRC2C	ENST00000367742.3,ENST00000476522.1	chr1	171454734:171454874:171481170:171481339:171482139:171482311,171454734:171454874:171481170:171481339:171482133:171482311,	171481171	171481339	171481270	171481270	Frame_Shift_Del	A	-	p.K16fs
LIHC	TCGA-DD-A3A0-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171510968:171511368:171514617:171514826:171519224:171519379,	171514618	171514826	171514769	171514769	Frame_Shift_Del	A	-	p.K1640fs
LIHC	TCGA-DD-A3A0-01	PRRC2C	ENST00000338920.4,ENST00000367742.3,ENST00000392078.3	chr1	171535730:171535982:171537385:171537478:171540458:171540560,	171537386	171537478	171537418	171537418	Frame_Shift_Del	T	-	p.S2198fs
LIHC	TCGA-DD-A3A0-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171544065:171544267:171546572:171546776:171548492:171548605,	171546573	171546776	171546694	171546694	Frame_Shift_Del	T	-	p.H2359fs
LIHC	TCGA-DD-A3A0-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171553557:171553665:171556141:171556360:171556786:171556890,	171556142	171556360	171556303	171556303	Frame_Shift_Del	T	-	p.P2637fs
LIHC	TCGA-DD-A3A0-01	PRRC2C	ENST00000338920.4,ENST00000498596.1,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171556211:171556360:171556786:171556890:171557517:171557602,	171556787	171556890	171556831	171556831	Frame_Shift_Del	A	-	p.I2671fs
LIHC	TCGA-DD-A3A0-01	VAMP4	ENST00000474047.1,ENST00000236192.7,ENST00000482519.1	chr1	171688310:171688361:171697663:171697710:171707488:171707603,	171697664	171697710	171697666	171697666	Frame_Shift_Del	A	-	p.F37fs
LIHC	TCGA-DD-A3A0-01	SUCO	ENST00000263688.3,ENST00000610051.1,ENST00000608804.1,ENST00000367723.4,ENST00000608151.1	chr1	172525008:172525163:172526419:172526557:172526783:172526934,	172526420	172526557	172526503	172526503	Frame_Shift_Del	C	-	p.A335fs
LIHC	TCGA-DD-A3A0-01	SLC9C2	ENST00000536496.1,ENST00000479367.1	chr1	173567044:173567171:173570788:173570855:173571889:173572189,	173570789	173570855	173570799	173570799	Frame_Shift_Del	A	-	p.V40fs
LIHC	TCGA-DD-A3A0-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173797470:173797537:173799797:173799899:173800672:173800768,	173799798	173799899	173799820	173799820	Frame_Shift_Del	T	-	p.I106fs
LIHC	TCGA-DD-A3A0-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173800672:173800768:173802513:173802637:173803610:173803657,	173802514	173802637	173802607	173802607	Frame_Shift_Del	A	-	p.K196fs
LIHC	TCGA-DD-A3A0-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173802513:173802637:173803610:173803657:173806077:173806184,	173803611	173803657	173803629	173803629	Frame_Shift_Del	C	-	p.T212fs
LIHC	TCGA-DD-A3A0-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173803610:173803657:173806077:173806184:173807327:173807397,	173806078	173806184	173806120	173806120	Frame_Shift_Del	T	-	p.F236fs
LIHC	TCGA-DD-A3A0-01	RC3H1	ENST00000258349.4,ENST00000367696.2,ENST00000367694.2	chr1	173916506:173916720:173921123:173921276:173930214:173930382,	173921124	173921276	173921238	173921238	Frame_Shift_Del	T	-	p.K803fs
LIHC	TCGA-DD-A3A0-01	RABGAP1L	ENST00000357444.6,ENST00000251507.4,ENST00000457696.1,ENST00000367689.3	chr1	174190109:174190302:174200282:174200493:174210620:174210795,	174200283	174200493	174200443	174200443	Frame_Shift_Del	C	-	p.Y164fs
LIHC	TCGA-DD-A3A0-01	RABGAP1L	ENST00000357444.6,ENST00000251507.4,ENST00000457696.1,ENST00000367689.3	chr1	174190109:174190302:174200282:174200493:174210620:174210795,	174200283	174200493	174200447	174200447	Frame_Shift_Del	T	-	p.F166fs
LIHC	TCGA-DD-A3A0-01	RABGAP1L	ENST00000251507.4,ENST00000474375.1	chr1	174606515:174606626:174652659:174652734:174668662:174668788,	174652660	174652734	174652707	174652707	Frame_Shift_Del	T	-	p.S624fs
LIHC	TCGA-DD-A3A0-01	MRPS14	ENST00000476371.1	chr1	174983380:174983987:174987553:174987712:174992499:174992561,	174987554	174987712	174987688	174987688	Frame_Shift_Del	G	-	p.Q24fs
LIHC	TCGA-DD-A3A0-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525948	176525948	Frame_Shift_Del	A	-	p.K164fs
LIHC	TCGA-DD-A3A0-01	SEC16B	ENST00000464631.2,ENST00000528461.1,ENST00000308284.6	chr1	177930724:177930869:177933305:177933414:177934181:177934302,	177933306	177933414	177933332	177933332	Frame_Shift_Del	G	-	p.L207fs
LIHC	TCGA-DD-A3A0-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178777179:178777263:178780449:178780539:178790746:178790839,	178780450	178780539	178780494	178780494	Frame_Shift_Del	A	-	p.L114fs
LIHC	TCGA-DD-A3A0-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178777179:178777263:178780449:178780539:178790746:178790839,	178780450	178780539	178780511	178780511	Frame_Shift_Del	T	-	p.V120fs
LIHC	TCGA-DD-A3A0-01	ANGPTL1	ENST00000234816.2,ENST00000367629.1	chr1	178821817:178822088:178822728:178822922:178834088:178834937,	178822729	178822922	178822866	178822866	Frame_Shift_Del	A	-	p.Y294fs
LIHC	TCGA-DD-A3A0-01	RALGPS2	ENST00000367632.2,ENST00000367634.2,ENST00000367635.3,ENST00000478871.1	chr1	178863053:178863159:178866798:178866891:178871240:178871346,	178866799	178866891	178866845	178866845	Frame_Shift_Del	T	-	p.L493fs
LIHC	TCGA-DD-A3A0-01	TOR3A	ENST00000367627.3,ENST00000352445.6,ENST00000483887.1	chr1	179052074:179052188:179054762:179055028:179057045:179057218,	179054763	179055028	179054862	179054862	Frame_Shift_Del	A	-	p.E158fs
LIHC	TCGA-DD-A3A0-01	SOAT1	ENST00000367619.3,ENST00000535686.1,ENST00000539888.1,ENST00000540564.1	chr1	179312724:179312770:179314081:179314211:179316734:179316832,	179314082	179314211	179314131	179314131	Frame_Shift_Del	C	-	p.A346fs
LIHC	TCGA-DD-A3A0-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414152	179414152	Frame_Shift_Del	A	-	p.S537fs
LIHC	TCGA-DD-A3A0-01	NPHS2	ENST00000367615.4	chr1	179523610:179523666:179526161:179526365:179528813:179528896,	179526162	179526365	179526354	179526354	Frame_Shift_Del	T	-	p.K182fs
LIHC	TCGA-DD-A3A0-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179609513:179609580:179620001:179620202:179621173:179621332,	179620002	179620202	179620064	179620064	Frame_Shift_Del	G	-	p.V621fs
LIHC	TCGA-DD-A3A0-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179609513:179609580:179620001:179620202:179621173:179621332,	179620002	179620202	179620124	179620124	Frame_Shift_Del	A	-	p.S641fs
LIHC	TCGA-DD-A3A0-01	TDRD5	ENST00000444136.1,ENST00000417329.1	chr1	179621173:179621332:179623335:179623497:179631238:179631421,	179623336	179623497	179623462	179623462	Frame_Shift_Del	A	-	p.N763fs
LIHC	TCGA-DD-A3A0-01	TOR1AIP1	ENST00000474875.1,ENST00000529091.1,ENST00000435319.4,ENST00000527391.1,ENST00000606911.2,ENST00000524653.1	chr1	179853826:179853904:179858447:179858504:179870436:179870522,179853826:179853904:179858447:179858504:179869260:179869302,	179858448	179858504	179858480	179858480	Frame_Shift_Del	C	-	p.P197fs
LIHC	TCGA-DD-A3A0-01	TOR1AIP1	ENST00000528443.2,ENST00000531726.1,ENST00000271583.3	chr1	179853826:179853904:179858444:179858504:179869260:179869302,	179858445	179858504	179858480	179858480	Frame_Shift_Del	C	-	p.P197fs
LIHC	TCGA-DD-A3A0-01	CEP350	ENST00000367607.3	chr1	180022884:180023069:180023549:180023637:180031354:180031501,	180023550	180023637	180023610	180023610	Frame_Shift_Del	T	-	p.G1745fs
LIHC	TCGA-DD-A3A0-01	CEP350	ENST00000429851.1,ENST00000367607.3	chr1	180053152:180053313:180056712:180056852:180059848:180059883,	180056713	180056852	180056794	180056794	Frame_Shift_Del	A	-	p.K2123fs
LIHC	TCGA-DD-A3A0-01	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180905471	180905471	Frame_Shift_Del	C	-	p.T809fs
LIHC	TCGA-DD-A3A0-01	MR1	ENST00000367579.3,ENST00000367580.5	chr1	181019281:181019422:181021370:181021646:181022708:181022813,	181021371	181021646	181021412	181021412	Frame_Shift_Del	G	-	p.G216fs
LIHC	TCGA-DD-A3A0-01	CACNA1E	ENST00000526775.1,ENST00000357570.5,ENST00000367573.2,ENST00000367567.4,ENST00000358338.5,ENST00000367570.1,ENST00000360108.3	chr1	181752814:181752920:181753796:181753904:181754453:181754554,	181753797	181753904	181753842	181753842	Frame_Shift_Del	C	-	p.T1820fs
LIHC	TCGA-DD-A3A0-01	CACNA1E	ENST00000526775.1,ENST00000357570.5,ENST00000367573.2,ENST00000367567.4,ENST00000358338.5,ENST00000367570.1,ENST00000360108.3	chr1	181752814:181752920:181753796:181753904:181754453:181754554,	181753797	181753904	181753898	181753898	Frame_Shift_Del	C	-	p.P1839fs
LIHC	TCGA-DD-A3A0-01	RGSL1	ENST00000542961.1,ENST00000443996.2,ENST00000367561.5,ENST00000294854.8	chr1	182441530:182441692:182442709:182443677:182457419:182457482,	182442710	182443677	182443151	182443151	Frame_Shift_Del	A	-	p.E302fs
LIHC	TCGA-DD-A3A0-01	RGS8	ENST00000258302.4,ENST00000367556.1,ENST00000367557.4,ENST00000483095.2	chr1	182615869:182616052:182617271:182617438:182635103:182635168,	182617272	182617438	182617403	182617403	Frame_Shift_Del	C	-	p.E77fs
LIHC	TCGA-DD-A3A0-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183204709:183204865:183205594:183205739:183206486:183206639,	183205595	183205739	183205602	183205602	Frame_Shift_Del	A	-	p.K822fs
LIHC	TCGA-DD-A3A0-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000419169.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183506279:183506350:183507514:183507575:183510118:183510238,	183507515	183507575	183507550	183507550	Frame_Shift_Del	T	-	p.F453fs
LIHC	TCGA-DD-A3A0-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515214	183515214	Frame_Shift_Del	A	-	p.I811fs
LIHC	TCGA-DD-A3A0-01	NCF2	ENST00000367535.3,ENST00000418089.1,ENST00000413720.1,ENST00000367536.1	chr1	183536338:183536480:183538276:183538320:183539914:183539974,	183538277	183538320	183538289	183538289	Frame_Shift_Del	G	-	p.P189fs
LIHC	TCGA-DD-A3A0-01	RGL1	ENST00000360851.3,ENST00000304685.4,ENST00000539189.1	chr1	183711260:183711424:183816699:183816908:183835129:183835207,183775508:183775619:183816699:183816908:183835129:183835207,	183816700	183816908	183816823	183816823	Frame_Shift_Del	A	-	p.N123fs
LIHC	TCGA-DD-A3A0-01	RGL1	ENST00000360851.3,ENST00000304685.4,ENST00000539189.1	chr1	183711260:183711424:183816699:183816908:183835129:183835207,183775508:183775619:183816699:183816908:183835129:183835207,	183816700	183816908	183816851	183816851	Frame_Shift_Del	T	-	p.L132fs
LIHC	TCGA-DD-A3A0-01	RNF2	ENST00000367510.3,ENST00000453650.1	chr1	185060710:185060871:185067203:185067476:185068922:185068925,185062192:185062408:185067203:185067476:185068922:185068925,	185067204	185067476	185067452	185067452	Frame_Shift_Del	A	-	p.E238fs
LIHC	TCGA-DD-A3A0-01	TRMT1L	ENST00000367506.5	chr1	185119510:185119624:185120956:185121067:185125609:185126113,	185120957	185121067	185120997	185120997	Frame_Shift_Del	A	-	p.F102fs
LIHC	TCGA-DD-A3A0-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185143503:185144245:185149522:185149582:185151077:185151189,	185149523	185149582	185149525	185149525	Frame_Shift_Del	T	-	p.S323fs
LIHC	TCGA-DD-A3A0-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185159680:185159774:185171785:185171931:185173831:185173995,	185171786	185171931	185171880	185171880	Frame_Shift_Del	A	-	p.N540fs
LIHC	TCGA-DD-A3A0-01	IVNS1ABP	ENST00000367498.3	chr1	185274667:185274775:185276145:185276271:185276620:185276794,	185276146	185276271	185276211	185276211	Frame_Shift_Del	C	-	p.V198fs
LIHC	TCGA-DD-A3A0-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186086125:186086247:186086590:186086755:186088322:186088430,	186086591	186086755	186086701	186086701	Frame_Shift_Del	A	-	p.K3932fs
LIHC	TCGA-DD-A3A0-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186275827	186275827	Frame_Shift_Del	A	-	p.K326fs
LIHC	TCGA-DD-A3A0-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186276566	186276566	Frame_Shift_Del	C	-	p.T572fs
LIHC	TCGA-DD-A3A0-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277462	186277462	Frame_Shift_Del	A	-	p.K871fs
LIHC	TCGA-DD-A3A0-01	PRG4	ENST00000367483.4,ENST00000367486.3,ENST00000367485.4,ENST00000445192.2,ENST00000367484.3	chr1	186278924:186279002:186280165:186280302:186280571:186280728,	186280166	186280302	186280244	186280244	Frame_Shift_Del	C	-	p.S1193fs
LIHC	TCGA-DD-A3A0-01	TPR	ENST00000367478.4	chr1	186292817:186293002:186294895:186294986:186295235:186295352,	186294896	186294986	186294963	186294963	Frame_Shift_Del	A	-	p.G2015fs
LIHC	TCGA-DD-A3A0-01	UCHL5	ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998661:192998787:193018875:193018981:193020883:193020947,	193018876	193018981	193018885	193018885	Frame_Shift_Del	A	-	p.F79fs
LIHC	TCGA-DD-A3A0-01	CDC73	ENST00000367435.3	chr1	193172924:193172982:193181194:193181230:193181519:193181607,	193181195	193181230	193181212	193181212	Frame_Shift_Del	C	-	p.P351fs
LIHC	TCGA-DD-A3A0-01	CDC73	ENST00000367435.3	chr1	193202155:193202284:193205385:193205486:193218859:193219001,	193205386	193205486	193205403	193205403	Frame_Shift_Del	T	-	p.V445fs
LIHC	TCGA-DD-A3A0-01	CFHR2	ENST00000367415.5	chr1	196912987:196913068:196918584:196918779:196920029:196920158,196912987:196913068:196918584:196918779:196919981:196920069,	196918585	196918779	196918604	196918604	Frame_Shift_Del	A	-	p.P26fs
LIHC	TCGA-DD-A3A0-01	CFHR2	ENST00000489703.1	chr1	196912987:196913068:196918565:196918779:196919981:196920069,	196918566	196918779	196918604	196918604	Frame_Shift_Del	A	-	p.P26fs
LIHC	TCGA-DD-A3A0-01	CFHR5	ENST00000256785.4,ENST00000367414.5	chr1	196965151:196965331:196967257:196967434:196971611:196971794,	196967258	196967434	196967301	196967301	Frame_Shift_Del	A	-	p.I362fs
LIHC	TCGA-DD-A3A0-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197059979:197060171:197061036:197061186:197062181:197062391,	197061037	197061186	197061182	197061182	Frame_Shift_Del	A	-	p.L3100fs
LIHC	TCGA-DD-A3A0-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070804	197070804	Frame_Shift_Del	T	-	p.N2526fs
LIHC	TCGA-DD-A3A0-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072803	197072803	Frame_Shift_Del	C	-	p.A1860fs
LIHC	TCGA-DD-A3A0-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197074268	197074268	Frame_Shift_Del	T	-	p.K1371fs
LIHC	TCGA-DD-A3A0-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197094175:197094321:197097619:197097795:197098316:197098447,	197097620	197097795	197097768	197097768	Frame_Shift_Del	A	-	p.S930fs
LIHC	TCGA-DD-A3A0-01	ZBTB41	ENST00000367405.4,ENST00000467322.1	chr1	197127571:197129144:197141289:197141378:197144139:197144245,	197141290	197141378	197141333	197141333	Frame_Shift_Del	A	-	p.F677fs
LIHC	TCGA-DD-A3A0-01	ZBTB41	ENST00000367405.4,ENST00000467322.1	chr1	197127571:197129144:197141289:197141378:197144139:197144245,	197141290	197141378	197141347	197141347	Frame_Shift_Del	A	-	p.C673fs
LIHC	TCGA-DD-A3A0-01	DENND1B	ENST00000235453.4,ENST00000294737.7,ENST00000400967.2,ENST00000422998.1,ENST00000496935.1	chr1	197611902:197611951:197614819:197614873:197621364:197621445,	197614820	197614873	197614854	197614854	Frame_Shift_Del	G	-	p.P146fs
LIHC	TCGA-DD-A3A0-01	PTPRC	ENST00000352140.3,ENST00000529828.1	chr1	198661475:198661502:198668692:198668833:198672426:198672475,198661475:198661502:198668692:198668833:198671515:198671659,198666009:198666038:198668692:198668833:198672426:198672475,	198668693	198668833	198668796	198668796	Frame_Shift_Del	A	-	p.A132fs
LIHC	TCGA-DD-A3A0-01	NR5A2	ENST00000367357.3,ENST00000367362.3,ENST00000236914.3,ENST00000544748.1	chr1	200012937:200013020:200014570:200014712:200017299:200017946,	200014571	200014712	200014574	200014574	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-DD-A3A0-01	KIF21B	ENST00000461742.2,ENST00000332129.2,ENST00000422435.2,ENST00000360529.5	chr1	200973467:200973583:200973893:200974061:200974435:200974570,	200973894	200974061	200973916	200973916	Frame_Shift_Del	C	-	p.G293fs
LIHC	TCGA-DD-A3A0-01	IGFN1	ENST00000437879.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201194951:201195251:201196009:201196336:201197513:201197776,	201196010	201196336	201196194	201196194	Frame_Shift_Del	C	-	p.N3657fs
LIHC	TCGA-DD-A3A0-01	TNNT2	ENST00000466570.1,ENST00000458432.2,ENST00000491504.1,ENST00000455702.1,ENST00000360372.4,ENST00000438742.1,ENST00000367322.1,ENST00000515042.1,ENST00000367315.2,ENST00000421663.2,ENST00000367318.5,ENST00000236918.7,ENST00000503459.1,ENST00000509001.1,ENST00000367317.4	chr1	201333425:201333503:201334318:201334435:201334737:201334798,	201334319	201334435	201334336	201334336	Frame_Shift_Del	A	-	p.S122fs
LIHC	TCGA-DD-A3A0-01	TNNT2	ENST00000466570.1,ENST00000458432.2,ENST00000491504.1,ENST00000455702.1,ENST00000360372.4,ENST00000438742.1,ENST00000367322.1,ENST00000515042.1,ENST00000367315.2,ENST00000421663.2,ENST00000367318.5,ENST00000236918.7,ENST00000503459.1,ENST00000509001.1,ENST00000367317.4	chr1	201333425:201333503:201334318:201334435:201334737:201334798,	201334319	201334435	201334414	201334414	Frame_Shift_Del	C	-	p.E96fs
LIHC	TCGA-DD-A3A0-01	LAD1	ENST00000503578.1,ENST00000367313.3,ENST00000391967.2,ENST00000488842.1	chr1	201351813:201351867:201352201:201352339:201352444:201352517,	201352202	201352339	201352228	201352228	Frame_Shift_Del	G	-	p.R454fs
LIHC	TCGA-DD-A3A0-01	LAD1	ENST00000503578.1,ENST00000367313.3,ENST00000391967.2,ENST00000488842.1	chr1	201351813:201351867:201352201:201352339:201352444:201352517,	201352202	201352339	201352314	201352314	Frame_Shift_Del	C	-	p.G425fs
LIHC	TCGA-DD-A3A0-01	CSRP1	ENST00000527662.1,ENST00000367306.1,ENST00000340006.2,ENST00000530120.1,ENST00000526723.1,ENST00000524951.1,ENST00000532460.1,ENST00000533432.1	chr1	201454410:201454504:201457982:201458112:201459303:201459419,	201457983	201458112	201458033	201458033	Frame_Shift_Del	G	-	p.R121fs
LIHC	TCGA-DD-A3A0-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618428	201618428	Frame_Shift_Del	A	-	p.Q211fs
LIHC	TCGA-DD-A3A0-01	IPO9	ENST00000361565.4	chr1	201840288:201840455:201841955:201842089:201843377:201843500,	201841956	201842089	201842086	201842086	Frame_Shift_Del	A	-	p.K903fs
LIHC	TCGA-DD-A3A0-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981471:201981564:201981767:201981887:201982074:201982164,	201981768	201981887	201981852	201981852	Frame_Shift_Del	C	-	p.A188fs
LIHC	TCGA-DD-A3A0-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128547	202128547	Frame_Shift_Del	G	-	p.P100fs
LIHC	TCGA-DD-A3A0-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128547	202128547	Frame_Shift_Del	G	-	p.P100fs
LIHC	TCGA-DD-A3A0-01	PPP1R12B	ENST00000608999.1,ENST00000356764.2,ENST00000336894.4,ENST00000480184.1	chr1	202391747:202391866:202394693:202394853:202396167:202396312,	202394694	202394853	202394716	202394716	Frame_Shift_Del	A	-	p.R188fs
LIHC	TCGA-DD-A3A0-01	PPP1R12B	ENST00000608999.1,ENST00000466968.1,ENST00000356764.2,ENST00000336894.4,ENST00000480184.1,ENST00000488330.1,ENST00000476364.1	chr1	202397982:202398057:202399858:202399938:202400607:202400747,	202399859	202399938	202399934	202399934	Frame_Shift_Del	A	-	p.K333fs
LIHC	TCGA-DD-A3A0-01	KDM5B	ENST00000367265.3,ENST00000235790.4,ENST00000367264.2	chr1	202725485:202725644:202727518:202727638:202729542:202729701,	202727519	202727638	202727590	202727590	Frame_Shift_Del	C	-	p.D376fs
LIHC	TCGA-DD-A3A0-01	KDM5B	ENST00000367265.3,ENST00000235790.4	chr1	202733176:202733273:202736053:202736188:202742245:202742412,	202736054	202736188	202736085	202736085	Frame_Shift_Del	G	-	p.P227fs
LIHC	TCGA-DD-A3A0-01	ADIPOR1	ENST00000367254.3	chr1	202917431:202917548:202920057:202920292:202927312:202927413,	202920058	202920292	202920102	202920102	Frame_Shift_Del	G	-	p.L34fs
LIHC	TCGA-DD-A3A0-01	TMEM183A	ENST00000468449.1,ENST00000543891.1,ENST00000367242.3	chr1	202977867:202977938:202984016:202984176:202985087:202985222,	202984017	202984176	202984154	202984154	Frame_Shift_Del	T	-	p.F169fs
LIHC	TCGA-DD-A3A0-01	TMEM183A	ENST00000468449.1	chr1	202984019:202984176:202985087:202985268:202987608:202987689,202984019:202984176:202985087:202985268:202986883:202987047,	202985088	202985268	202985228	202985228	Frame_Shift_Del	C	-	p.A223fs
LIHC	TCGA-DD-A3A0-01	PPFIA4	ENST00000295706.4,ENST00000600426.1,ENST00000447715.2,ENST00000414050.2	chr1	203018045:203018108:203018803:203018895:203020896:203021005,	203018804	203018895	203018864	203018864	Frame_Shift_Del	G	-	p.G474fs
LIHC	TCGA-DD-A3A0-01	CHI3L1	ENST00000255409.3	chr1	203151858:203151980:203152768:203152919:203153703:203153760,	203152769	203152919	203152915	203152915	Frame_Shift_Del	A	-	p.S107fs
LIHC	TCGA-DD-A3A0-01	ATP2B4	ENST00000391954.2,ENST00000367218.3,ENST00000367219.3	chr1	203595927:203596347:203651869:203652526:203667284:203667482,	203651870	203652526	203652515	203652515	Frame_Shift_Del	C	-	p.S61fs
LIHC	TCGA-DD-A3A0-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667452	203667452	Frame_Shift_Del	T	-	p.F121fs
LIHC	TCGA-DD-A3A0-01	ATP2B4	ENST00000391954.2,ENST00000484746.1,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203696595:203696699:203702350:203702528:203708673:203708772,	203702351	203702528	203702484	203702484	Frame_Shift_Del	C	-	p.S1148fs
LIHC	TCGA-DD-A3A0-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4,ENST00000453771.1	chr1	203799250:203799331:203800788:203800899:203802918:203802981,	203800789	203800899	203800846	203800846	Frame_Shift_Del	A	-	p.E253fs
LIHC	TCGA-DD-A3A0-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816753	203816753	Frame_Shift_Del	C	-	p.S495fs
LIHC	TCGA-DD-A3A0-01	SOX13	ENST00000367204.1	chr1	204042731:204042839:204082042:204082262:204083448:204083560,	204082043	204082262	204082150	204082150	Frame_Shift_Del	C	-	p.A36fs
LIHC	TCGA-DD-A3A0-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204192589:204192713:204197210:204197356:204197855:204197989,	204197211	204197356	204197325	204197325	Frame_Shift_Del	C	-	p.D973fs
LIHC	TCGA-DD-A3A0-01	PLEKHA6	ENST00000414478.1	chr1	204230465:204230636:204234069:204234170:204236602:204236675,	204234070	204234170	204234135	204234135	Frame_Shift_Del	G	-	p.L107fs
LIHC	TCGA-DD-A3A0-01	PLEKHA6	ENST00000414478.1	chr1	204230465:204230636:204234069:204234170:204236602:204236675,	204234070	204234170	204234146	204234146	Frame_Shift_Del	C	-	p.G102fs
LIHC	TCGA-DD-A3A0-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204418312:204418424:204418977:204419145:204423796:204423919,	204418978	204419145	204419065	204419065	Frame_Shift_Del	G	-	p.P717fs
LIHC	TCGA-DD-A3A0-01	MDM4	ENST00000391947.2,ENST00000454264.2,ENST00000463049.1,ENST00000507825.2,ENST00000367182.3,ENST00000470797.1,ENST00000470908.1,ENST00000367180.1	chr1	204495487:204495562:204499811:204499945:204501318:204501374,	204499812	204499945	204499852	204499852	Frame_Shift_Del	T	-	p.L65fs
LIHC	TCGA-DD-A3A0-01	MDM4	ENST00000454264.2	chr1	204507348:204507436:204511911:204512072:204515924:204515960,	204511912	204512072	204511978	204511978	Frame_Shift_Del	G	-	p.W193fs
LIHC	TCGA-DD-A3A0-01	MDM4	ENST00000391947.2,ENST00000463049.1,ENST00000367182.3,ENST00000470908.1,ENST00000367179.3	chr1	204511916:204512072:204513662:204513812:204515924:204515960,	204513663	204513812	204513708	204513708	Frame_Shift_Del	T	-	p.F240fs
LIHC	TCGA-DD-A3A0-01	NFASC	ENST00000367171.4,ENST00000367170.4,ENST00000413225.1,ENST00000401399.1,ENST00000367172.4,ENST00000339876.6	chr1	204957791:204957934:204971723:204971876:204978684:204978816,204970297:204970414:204971723:204971876:204978684:204978816,	204971724	204971876	204971735	204971735	Frame_Shift_Del	A	-	p.K1158fs
LIHC	TCGA-DD-A3A0-01	NFASC	ENST00000367171.4,ENST00000367170.4,ENST00000413225.1,ENST00000401399.1,ENST00000367172.4,ENST00000339876.6	chr1	204957791:204957934:204971723:204971876:204978684:204978816,204970297:204970414:204971723:204971876:204978684:204978816,	204971724	204971876	204971826	204971826	Frame_Shift_Del	G	-	p.R1187fs
LIHC	TCGA-DD-A3A0-01	TMCC2	ENST00000358024.3,ENST00000545499.1,ENST00000495538.1	chr1	205210641:205211172:205238077:205239012:205240247:205240383,	205238078	205239012	205238607	205238607	Frame_Shift_Del	G	-	p.R426fs
LIHC	TCGA-DD-A3A0-01	LEMD1	ENST00000367153.4	chr1	205353415:205353492:205385359:205385424:205389582:205389702,205353415:205353492:205385359:205385424:205388357:205388480,	205385360	205385424	205385377	205385377	Frame_Shift_Del	T	-	p.S85fs
LIHC	TCGA-DD-A3A0-01	SLC26A9	ENST00000491127.1,ENST00000340781.4,ENST00000367135.3,ENST00000367134.2	chr1	205895662:205895758:205896338:205896416:205896619:205896733,	205896339	205896416	205896363	205896363	Frame_Shift_Del	C	-	p.G423fs
LIHC	TCGA-DD-A3A0-01	SLC26A9	ENST00000469392.1,ENST00000340781.4,ENST00000367135.3,ENST00000367134.2	chr1	205897954:205898037:205898331:205898484:205899019:205899184,	205898332	205898484	205898454	205898454	Frame_Shift_Del	G	-	p.H250fs
LIHC	TCGA-DD-A3A0-01	EIF2D	ENST00000367114.3,ENST00000468891.1,ENST00000271764.2	chr1	206772356:206772446:206772816:206772966:206773086:206773172,	206772817	206772966	206772934	206772934	Frame_Shift_Del	G	-	p.P362fs
LIHC	TCGA-DD-A3A0-01	EIF2D	ENST00000367114.3,ENST00000271764.2	chr1	206772816:206772966:206773086:206773190:206773616:206773662,	206773087	206773190	206773124	206773124	Frame_Shift_Del	C	-	p.V339fs
LIHC	TCGA-DD-A3A0-01	IL20	ENST00000367098.1,ENST00000367096.3	chr1	207039828:207039981:207040728:207040803:207041831:207041909,	207040729	207040803	207040753	207040753	Frame_Shift_Del	G	-	p.G135fs
LIHC	TCGA-DD-A3A0-01	PIGR	ENST00000356495.4	chr1	207107764:207108091:207108830:207109163:207110439:207110544,	207108831	207109163	207109093	207109093	Frame_Shift_Del	G	-	p.P372fs
LIHC	TCGA-DD-A3A0-01	PIGR	ENST00000356495.4	chr1	207110986:207111096:207112463:207112808:207113833:207113929,	207112464	207112808	207112724	207112724	Frame_Shift_Del	G	-	p.P44fs
LIHC	TCGA-DD-A3A0-01	FCAMR	ENST00000400962.3,ENST00000488345.1,ENST00000450945.2,ENST00000324852.4,ENST00000487149.1	chr1	207135699:207135896:207139059:207139203:207140396:207140457,	207139060	207139203	207139171	207139171	Frame_Shift_Del	G	-	p.H68fs
LIHC	TCGA-DD-A3A0-01	FCAMR	ENST00000324863.2	chr1	207135699:207135896:207139059:207139297:207140396:207140457,	207139060	207139297	207139171	207139171	Frame_Shift_Del	G	-	p.H68fs
LIHC	TCGA-DD-A3A0-01	C4BPA	ENST00000367070.3	chr1	207314450:207314621:207317162:207317338:207317888:207318317,	207317163	207317338	207317276	207317276	Frame_Shift_Del	C	-	p.P520fs
LIHC	TCGA-DD-A3A0-01	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782652	207782652	Frame_Shift_Del	C	-	p.P1973fs
LIHC	TCGA-DD-A3A0-01	CD46	ENST00000469535.1,ENST00000441839.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1	chr1	207925401:207925654:207930358:207930547:207930884:207930987,	207930359	207930547	207930497	207930497	Frame_Shift_Del	T	-	p.I79fs
LIHC	TCGA-DD-A3A0-01	CD46	ENST00000441839.2,ENST00000358170.2,ENST00000322875.4,ENST00000354848.1,ENST00000367042.1,ENST00000367047.1	chr1	207940357:207940540:207943665:207943707:207956636:207956675,207941123:207941168:207943665:207943707:207956636:207956675,	207943666	207943707	207943683	207943683	Frame_Shift_Del	A	-	p.K322fs
LIHC	TCGA-DD-A3A0-01	PLXNA2	ENST00000367033.3	chr1	208255756:208255853:208257724:208257925:208266130:208266245,	208257725	208257925	208257877	208257877	Frame_Shift_Del	C	-	p.E716fs
LIHC	TCGA-DD-A3A0-01	PLXNA2	ENST00000367033.3	chr1	208315673:208315808:208383624:208383807:208390079:208390359,	208383625	208383807	208383655	208383655	Frame_Shift_Del	A	-	p.F447fs
LIHC	TCGA-DD-A3A0-01	CAMK1G	ENST00000361322.2,ENST00000009105.1	chr1	209784809:209784897:209785136:209785561:209786129:209786257,	209785137	209785561	209785503	209785503	Frame_Shift_Del	A	-	p.K428fs
LIHC	TCGA-DD-A3A0-01	TRAF3IP3	ENST00000478359.1,ENST00000367025.3,ENST00000367024.1	chr1	209933516:209933729:209935859:209936007:209936157:209936215,	209935860	209936007	209935884	209935884	Frame_Shift_Del	T	-	p.F124fs
LIHC	TCGA-DD-A3A0-01	HHAT	ENST00000391905.3,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000261458.3	chr1	210502296:210502448:210536195:210536263:210560811:210560925,210522276:210522410:210536195:210536263:210560811:210560925,	210536196	210536263	210536246	210536246	Frame_Shift_Del	T	-	p.F48fs
LIHC	TCGA-DD-A3A0-01	RCOR3	ENST00000526255.1	chr1	211477424:211477482:211486061:211486303:211486765:211486816,211485696:211485829:211486061:211486303:211486765:211486816,	211486062	211486303	211486252	211486252	Frame_Shift_Del	A	-	p.T364fs
LIHC	TCGA-DD-A3A0-01	NEK2	ENST00000366999.4,ENST00000366998.3,ENST00000540251.1	chr1	211844543:211844626:211846824:211847065:211847637:211847855,	211846825	211847065	211846857	211846857	Frame_Shift_Del	T	-	p.T175fs
LIHC	TCGA-DD-A3A0-01	LPGAT1	ENST00000366996.1,ENST00000366997.4	chr1	211952341:211952386:211956570:211956844:211960973:211961069,	211956571	211956844	211956693	211956693	Frame_Shift_Del	T	-	p.N203fs
LIHC	TCGA-DD-A3A0-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000461212.1,ENST00000366992.3,ENST00000440600.2,ENST00000366993.3	chr1	212141219:212141323:212141854:212142049:212148507:212148684,	212141855	212142049	212142005	212142005	Frame_Shift_Del	A	-	p.F620fs
LIHC	TCGA-DD-A3A0-01	INTS7	ENST00000366994.3,ENST00000366992.3,ENST00000366993.3	chr1	212190227:212190365:212193463:212193610:212194424:212194554,	212193464	212193610	212193510	212193510	Frame_Shift_Del	A	-	p.S109fs
LIHC	TCGA-DD-A3A0-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212253956:212254092:212273593:212274426:212276183:212276604,	212273594	212274426	212273948	212273948	Frame_Shift_Del	C	-	p.S539fs
LIHC	TCGA-DD-A3A0-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212253956:212254092:212273593:212274426:212276183:212276604,	212273594	212274426	212274310	212274310	Frame_Shift_Del	A	-	p.K660fs
LIHC	TCGA-DD-A3A0-01	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212506838:212506940:212515529:212515622:212519144:212519225,	212515530	212515622	212515554	212515554	Frame_Shift_Del	T	-	p.F169fs
LIHC	TCGA-DD-A3A0-01	TMEM206	ENST00000467822.1,ENST00000261455.4,ENST00000535273.1	chr1	212548589:212548642:212550903:212551048:212553236:212553250,	212550904	212551048	212550983	212550983	Frame_Shift_Del	C	-	p.G235fs
LIHC	TCGA-DD-A3A0-01	TATDN3	ENST00000525574.1,ENST00000530441.1	chr1	212970453:212970538:212976042:212976105:212977661:212977771,212969858:212969932:212976042:212976105:212977661:212977771,	212976043	212976105	212976093	212976093	Frame_Shift_Del	G	-	p.L103fs
LIHC	TCGA-DD-A3A0-01	TATDN3	ENST00000526997.1	chr1	212981077:212981190:212985592:212985670:212988354:212988517,212977960:212977993:212985592:212985670:212988354:212988517,	212985593	212985670	212985636	212985636	Frame_Shift_Del	A	-	p.E216fs
LIHC	TCGA-DD-A3A0-01	TATDN3	ENST00000532324.1	chr1	212981077:212981190:212985568:212985670:212988388:212988939,212981077:212981190:212985568:212985670:212988354:212988517,	212985569	212985670	212985636	212985636	Frame_Shift_Del	A	-	p.E216fs
LIHC	TCGA-DD-A3A0-01	TATDN3	ENST00000366974.4,ENST00000525574.1,ENST00000526641.1	chr1	212977960:212977993:212985589:212985670:212988354:212988517,212981077:212981190:212985589:212985670:212988354:212988517,	212985590	212985670	212985636	212985636	Frame_Shift_Del	A	-	p.E216fs
LIHC	TCGA-DD-A3A0-01	FLVCR1	ENST00000366971.4	chr1	213037066:213037211:213046019:213046160:213056712:213056780,	213046020	213046160	213046029	213046029	Frame_Shift_Del	A	-	p.E298fs
LIHC	TCGA-DD-A3A0-01	FLVCR1	ENST00000483790.1,ENST00000419102.1,ENST00000366971.4	chr1	213061830:213061936:213062487:213062599:213068327:213068395,	213062488	213062599	213062578	213062578	Frame_Shift_Del	T	-	p.F502fs
LIHC	TCGA-DD-A3A0-01	ANGEL2	ENST00000366962.3,ENST00000460337.1	chr1	213180470:213180540:213181551:213181808:213186434:213186760,	213181552	213181808	213181758	213181758	Frame_Shift_Del	T	-	p.T146fs
LIHC	TCGA-DD-A3A0-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213415431	213415431	Frame_Shift_Del	A	-	p.E871fs
LIHC	TCGA-DD-A3A0-01	SMYD2	ENST00000491455.1,ENST00000366957.5,ENST00000471645.1,ENST00000415093.2	chr1	214478534:214478593:214488104:214488215:214491421:214491482,	214488105	214488215	214488151	214488151	Frame_Shift_Del	T	-	p.V95fs
LIHC	TCGA-DD-A3A0-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214556732	214556732	Frame_Shift_Del	T	-	p.K822fs
LIHC	TCGA-DD-A3A0-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557975	214557975	Frame_Shift_Del	G	-	p.P408fs
LIHC	TCGA-DD-A3A0-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813561	214813561	Frame_Shift_Del	A	-	p.E627fs
LIHC	TCGA-DD-A3A0-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813635	214813635	Frame_Shift_Del	A	-	p.K652fs
LIHC	TCGA-DD-A3A0-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814126	214814126	Frame_Shift_Del	T	-	p.R815fs
LIHC	TCGA-DD-A3A0-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814471	214814471	Frame_Shift_Del	A	-	p.L930fs
LIHC	TCGA-DD-A3A0-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818202	214818202	Frame_Shift_Del	G	-	p.L1763fs
LIHC	TCGA-DD-A3A0-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819575	214819575	Frame_Shift_Del	A	-	p.E2221fs
LIHC	TCGA-DD-A3A0-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214820531	214820531	Frame_Shift_Del	A	-	p.K2540fs
LIHC	TCGA-DD-A3A0-01	CENPF	ENST00000467765.1,ENST00000366955.3	chr1	214822017:214822170:214825052:214825229:214826170:214826332,	214825053	214825229	214825224	214825224	Frame_Shift_Del	A	-	p.K2719fs
LIHC	TCGA-DD-A3A0-01	KCTD3	ENST00000259154.4	chr1	215752342:215752480:215753251:215753342:215759837:215760028,	215753252	215753342	215753321	215753321	Frame_Shift_Del	C	-	p.A202fs
LIHC	TCGA-DD-A3A0-01	ESRRG	ENST00000366938.2,ENST00000359162.2,ENST00000366940.2,ENST00000493748.1,ENST00000360012.3,ENST00000391890.3,ENST00000361395.2,ENST00000361525.3,ENST00000408911.3,ENST00000463665.1,ENST00000366937.1,ENST00000487276.1,ENST00000493603.1	chr1	216680129:216680525:216692493:216692763:216737560:216737722,	216692494	216692763	216692528	216692528	Frame_Shift_Del	A	-	p.F350fs
LIHC	TCGA-DD-A3A0-01	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220198473:220198600:220203727:220203822:220205728:220205868,	220203728	220203822	220203793	220203793	Frame_Shift_Del	T	-	p.K186fs
LIHC	TCGA-DD-A3A0-01	IARS2	ENST00000366922.1,ENST00000302637.5	chr1	220315144:220315290:220316285:220316476:220318850:220318995,	220316286	220316476	220316309	220316309	Frame_Shift_Del	G	-	p.G790fs
LIHC	TCGA-DD-A3A0-01	RAB3GAP2	ENST00000491305.1,ENST00000491005.1,ENST00000358951.2	chr1	220324947:220325106:220326526:220326748:220327309:220327399,	220326527	220326748	220326565	220326565	Frame_Shift_Del	C	-	p.E1277fs
LIHC	TCGA-DD-A3A0-01	RAB3GAP2	ENST00000484658.1,ENST00000474178.1,ENST00000358951.2	chr1	220383729:220383831:220384142:220384218:220384296:220384344,	220384143	220384218	220384173	220384173	Frame_Shift_Del	A	-	p.F160fs
LIHC	TCGA-DD-A3A0-01	AIDA	ENST00000497112.1,ENST00000474863.1,ENST00000470437.1,ENST00000340020.6,ENST00000541237.1,ENST00000355727.2	chr1	222860936:222861000:222867130:222867185:222867551:222867605,	222867131	222867185	222867142	222867142	Frame_Shift_Del	T	-	p.K93fs
LIHC	TCGA-DD-A3A0-01	BROX	ENST00000426638.1,ENST00000537020.1,ENST00000340934.5	chr1	222892604:222892701:222895760:222895856:222897433:222897506,	222895761	222895856	222895853	222895853	Frame_Shift_Del	A	-	p.E133fs
LIHC	TCGA-DD-A3A0-01	SUSD4	ENST00000483818.1,ENST00000494793.2,ENST00000608996.1,ENST00000344029.6,ENST00000478605.1,ENST00000366878.4	chr1	223441843:223442017:223465780:223465993:223536619:223536679,	223465781	223465993	223465932	223465932	Frame_Shift_Del	G	-	p.P70fs
LIHC	TCGA-DD-A3A0-01	CAPN8	ENST00000419193.2	chr1	223803671:223803847:223806994:223807155:223807893:223807968,	223806995	223807155	223807012	223807012	Frame_Shift_Del	C	-	p.G373fs
LIHC	TCGA-DD-A3A0-01	CAPN8	ENST00000419193.2	chr1	223803671:223803847:223806994:223807155:223807893:223807968,	223806995	223807155	223807096	223807096	Frame_Shift_Del	G	-	p.P345fs
LIHC	TCGA-DD-A3A0-01	TP53BP2	ENST00000498843.1,ENST00000343537.7,ENST00000391878.2	chr1	223983875:223984292:223985916:223986379:223987600:223987749,	223985917	223986379	223985982	223985982	Frame_Shift_Del	T	-	p.N499fs
LIHC	TCGA-DD-A3A0-01	TP53BP2	ENST00000498843.1,ENST00000343537.7,ENST00000391878.2	chr1	223983875:223984292:223985916:223986379:223987600:223987749,	223985917	223986379	223986043	223986043	Frame_Shift_Del	G	-	p.Q479fs
LIHC	TCGA-DD-A3A0-01	NVL	ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000361463.3,ENST00000469075.1,ENST00000281701.6	chr1	224475476:224475695:224477185:224477435:224481968:224482043,	224477186	224477435	224477262	224477262	Frame_Shift_Del	T	-	p.N500fs
LIHC	TCGA-DD-A3A0-01	NVL	ENST00000467882.1,ENST00000482491.1,ENST00000391875.2,ENST00000340871.4,ENST00000469968.1,ENST00000361463.3,ENST00000469075.1,ENST00000281701.6	chr1	224481968:224482113:224484202:224484320:224488263:224488365,	224484203	224484320	224484266	224484266	Frame_Shift_Del	T	-	p.R373fs
LIHC	TCGA-DD-A3A0-01	WDR26	ENST00000295024.6,ENST00000486652.1,ENST00000414423.2,ENST00000366852.2,ENST00000479727.1,ENST00000480676.2	chr1	224585798:224585928:224586216:224586295:224586590:224586736,	224586217	224586295	224586258	224586258	Frame_Shift_Del	A	-	p.S535fs
LIHC	TCGA-DD-A3A0-01	WDR26	ENST00000295024.6,ENST00000414423.2	chr1	224599128:224599267:224605961:224606118:224607219:224607317,	224605962	224606118	224605969	224605969	Frame_Shift_Del	A	-	p.C338fs
LIHC	TCGA-DD-A3A0-01	DNAH14	ENST00000430092.1,ENST00000439375.2,ENST00000328556.5	chr1	225284819:225284941:225288414:225288586:225305385:225305490,	225288415	225288586	225288464	225288464	Frame_Shift_Del	A	-	p.K1250fs
LIHC	TCGA-DD-A3A0-01	DNAH14	ENST00000495456.1,ENST00000328556.5	chr1	225305672:225305701:225306921:225306996:225311228:225311316,	225306922	225306996	225306969	225306969	Frame_Shift_Del	A	-	p.E1380fs
LIHC	TCGA-DD-A3A0-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225488570:225488732:225490857:225491049:225492609:225492791,	225490858	225491049	225490880	225490880	Frame_Shift_Del	T	-	p.I2792fs
LIHC	TCGA-DD-A3A0-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225519138:225519279:225520992:225521208:225524967:225525198,	225520993	225521208	225521046	225521046	Frame_Shift_Del	G	-	p.L3213fs
LIHC	TCGA-DD-A3A0-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225539348:225539585:225541504:225541590:225546197:225546354,	225541505	225541590	225541586	225541586	Frame_Shift_Del	T	-	p.I3779fs
LIHC	TCGA-DD-A3A0-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225567860:225568024:225569084:225569281:225576080:225576193,	225569085	225569281	225569248	225569248	Frame_Shift_Del	T	-	p.S4246fs
LIHC	TCGA-DD-A3A0-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225576080:225576193:225577435:225577575:225579992:225580153,	225577436	225577575	225577494	225577494	Frame_Shift_Del	A	-	p.K4315fs
LIHC	TCGA-DD-A3A0-01	LBR	ENST00000338179.2,ENST00000424022.1,ENST00000272163.4	chr1	225594465:225594534:225597992:225598118:225599038:225599119,	225597993	225598118	225598093	225598093	Frame_Shift_Del	A	-	p.L405fs
LIHC	TCGA-DD-A3A0-01	ENAH	ENST00000366844.3,ENST00000358675.2	chr1	225688693:225688772:225692692:225692755:225695652:225695719,	225692693	225692755	225692722	225692722	Frame_Shift_Del	A	-	p.F524fs
LIHC	TCGA-DD-A3A0-01	EPHX1	ENST00000272167.5	chr1	226013054:226013245:226016425:226016613:226019479:226019614,225997796:225997871:226016425:226016613:226019479:226019614,	226016426	226016613	226016504	226016504	Frame_Shift_Del	A	-	p.E25fs
LIHC	TCGA-DD-A3A0-01	EPHX1	ENST00000272167.5	chr1	226013054:226013245:226016425:226016613:226019479:226019614,225997796:225997871:226016425:226016613:226019479:226019614,	226016426	226016613	226016580	226016580	Frame_Shift_Del	T	-	p.P50fs
LIHC	TCGA-DD-A3A0-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226924041	226924041	Frame_Shift_Del	C	-	p.G373fs
LIHC	TCGA-DD-A3A0-01	CDC42BPA	ENST00000366769.3,ENST00000334218.5,ENST00000366767.3,ENST00000448940.1	chr1	227227831:227227937:227235627:227235711:227257477:227257554,	227235628	227235711	227235645	227235645	Frame_Shift_Del	T	-	p.T991fs
LIHC	TCGA-DD-A3A0-01	CDC42BPA	ENST00000366769.3,ENST00000334218.5,ENST00000366767.3,ENST00000448940.1	chr1	227227831:227227937:227235627:227235711:227257477:227257554,	227235628	227235711	227235661	227235661	Frame_Shift_Del	T	-	p.K985fs
LIHC	TCGA-DD-A3A0-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227300012:227300123:227300371:227300614:227307504:227307638,	227300372	227300614	227300375	227300375	Frame_Shift_Del	T	-	p.K629fs
LIHC	TCGA-DD-A3A0-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366767.3,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227307504:227307638:227316809:227316932:227327276:227327443,	227316810	227316932	227316851	227316851	Frame_Shift_Del	T	-	p.N491fs
LIHC	TCGA-DD-A3A0-01	JMJD4	ENST00000366758.3,ENST00000438896.2	chr1	227920629:227920728:227921114:227921382:227921607:227921733,	227921115	227921382	227921299	227921299	Frame_Shift_Del	G	-	p.P259fs
LIHC	TCGA-DD-A3A0-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228433113:228433389:228434228:228434504:228437665:228437941,	228434229	228434504	228434467	228434467	Frame_Shift_Del	T	-	p.A1424fs
LIHC	TCGA-DD-A3A0-01	OBSCN	ENST00000570156.2,ENST00000359599.6	chr1	228444351:228444627:228447201:228447477:228451816:228452092,	228447202	228447477	228447441	228447441	Frame_Shift_Del	G	-	p.G1702fs
LIHC	TCGA-DD-A3A0-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6,ENST00000422127.1	chr1	228475761:228476025:228476325:228476589:228479598:228479862,	228476326	228476589	228476457	228476457	Frame_Shift_Del	G	-	p.G3832fs
LIHC	TCGA-DD-A3A0-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6,ENST00000422127.1	chr1	228475761:228476025:228476325:228476589:228479598:228479862,	228476326	228476589	228476532	228476532	Frame_Shift_Del	G	-	p.G3857fs
LIHC	TCGA-DD-A3A0-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228525990:228526073:228526553:228526727:228527645:228527802,	228526554	228526727	228526647	228526647	Frame_Shift_Del	C	-	p.C6683fs
LIHC	TCGA-DD-A3A0-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422305	229422305	Frame_Shift_Del	A	-	p.E35fs
LIHC	TCGA-DD-A3A0-01	RAB4A	ENST00000366690.4	chr1	229422232:229422313:229424475:229424590:229431594:229431657,	229424476	229424590	229424489	229424489	Frame_Shift_Del	A	-	p.S42fs
LIHC	TCGA-DD-A3A0-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229593907:229594043:229596357:229596516:229599289:229599423,	229596358	229596516	229596416	229596416	Frame_Shift_Del	A	-	p.L929fs
LIHC	TCGA-DD-A3A0-01	ABCB10	ENST00000344517.4	chr1	229665945:229666155:229667382:229667478:229675202:229675338,	229667383	229667478	229667429	229667429	Frame_Shift_Del	C	-	p.G463fs
LIHC	TCGA-DD-A3A0-01	C1orf198	ENST00000366663.5,ENST00000523410.1,ENST00000470540.1	chr1	230975366:230975654:230979099:230979642:230991413:230991464,	230979100	230979642	230979187	230979187	Frame_Shift_Del	G	-	p.P280fs
LIHC	TCGA-DD-A3A0-01	C1orf198	ENST00000366663.5,ENST00000523410.1,ENST00000470540.1	chr1	230975366:230975654:230979099:230979642:230991413:230991464,	230979100	230979642	230979359	230979359	Frame_Shift_Del	T	-	p.K223fs
LIHC	TCGA-DD-A3A0-01	TTC13	ENST00000366662.4,ENST00000414259.1,ENST00000481976.2,ENST00000522821.1,ENST00000366661.4	chr1	231090078:231090149:231093969:231094045:231096954:231097049,	231093970	231094045	231094001	231094001	Frame_Shift_Del	G	-	p.A137fs
LIHC	TCGA-DD-A3A0-01	C1orf131	ENST00000318906.2,ENST00000366649.2	chr1	231362718:231362814:231364895:231364955:231374602:231374639,	231364896	231364955	231364936	231364936	Frame_Shift_Del	A	-	p.L157fs
LIHC	TCGA-DD-A3A0-01	C1orf131	ENST00000486384.1,ENST00000366651.3	chr1	231362718:231362814:231364895:231364952:231374602:231374639,	231364896	231364952	231364936	231364936	Frame_Shift_Del	A	-	p.L157fs
LIHC	TCGA-DD-A3A0-01	SIPA1L2	ENST00000308942.4	chr1	232538137:232538219:232539193:232539317:232551239:232551371,	232539194	232539317	232539255	232539255	Frame_Shift_Del	C	-	p.A1627fs
LIHC	TCGA-DD-A3A0-01	SIPA1L2	ENST00000262861.4,ENST00000366630.1	chr1	232539278:232539317:232539870:232539924:232551239:232551371,	232539871	232539924	232539899	232539899	Frame_Shift_Del	C	-	p.G1596fs
LIHC	TCGA-DD-A3A0-01	SIPA1L2	ENST00000308942.4	chr1	232539870:232539924:232551239:232551371:232561334:232561554,232539278:232539317:232551239:232551371:232561334:232561554,	232551240	232551371	232551270	232551270	Frame_Shift_Del	G	-	p.H1578fs
LIHC	TCGA-DD-A3A0-01	SIPA1L2	ENST00000262861.4,ENST00000366630.1	chr1	232600585:232601162:232607116:232607274:232615372:232615476,	232607117	232607274	232607262	232607262	Frame_Shift_Del	T	-	p.R700fs
LIHC	TCGA-DD-A3A0-01	SLC35F3	ENST00000366618.3,ENST00000366617.3	chr1	234454496:234454689:234455843:234455933:234458753:234460257,	234455844	234455933	234455885	234455885	Frame_Shift_Del	C	-	p.P397fs
LIHC	TCGA-DD-A3A0-01	TARBP1	ENST00000496673.1	chr1	234527343:234527491:234528161:234528298:234529107:234529222,234527343:234527491:234528161:234528298:234529391:234529583,	234528162	234528298	234528214	234528214	Frame_Shift_Del	T	-	p.S1549fs
LIHC	TCGA-DD-A3A0-01	RBM34	ENST00000366606.3,ENST00000474086.1,ENST00000408888.3	chr1	235311718:235311762:235316020:235316080:235318195:235318427,	235316021	235316080	235316030	235316030	Frame_Shift_Del	A	-	p.F216fs
LIHC	TCGA-DD-A3A0-01	ARID4B	ENST00000366603.2,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3	chr1	235359345:235359430:235377083:235377341:235383107:235383283,	235377084	235377341	235377115	235377115	Frame_Shift_Del	A	-	p.Y604fs
LIHC	TCGA-DD-A3A0-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000536965.1,ENST00000389793.2	chr1	235929538:235929577:235933459:235933597:235937141:235937291,	235933460	235933597	235933585	235933585	Frame_Shift_Del	C	-	p.E1933fs
LIHC	TCGA-DD-A3A0-01	NID1	ENST00000264187.6	chr1	236154185:236154358:236156944:236157172:236175220:236175343,	236156945	236157172	236156947	236156947	Frame_Shift_Del	G	-	p.P918fs
LIHC	TCGA-DD-A3A0-01	NID1	ENST00000264187.6	chr1	236154185:236154358:236156944:236157172:236175220:236175343,	236156945	236157172	236157116	236157116	Frame_Shift_Del	C	-	p.A862fs
LIHC	TCGA-DD-A3A0-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236195700:236195952:236201403:236201553:236205209:236205592,	236201404	236201553	236201533	236201533	Frame_Shift_Del	A	-	p.S386fs
LIHC	TCGA-DD-A3A0-01	EDARADD	ENST00000334232.4,ENST00000439430.1,ENST00000359362.5	chr1	236577559:236577599:236590691:236590750:236631530:236631576,	236590692	236590750	236590742	236590742	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A3A0-01	LGALS8	ENST00000406509.3,ENST00000434231.2,ENST00000454943.2,ENST00000352231.2,ENST00000366583.2,ENST00000526589.1,ENST00000341872.6,ENST00000366584.4,ENST00000323938.6,ENST00000526634.1,ENST00000450372.2,ENST00000527974.1	chr1	236702259:236702389:236703863:236703983:236704953:236704972,	236703864	236703983	236703918	236703918	Frame_Shift_Del	A	-	p.K134fs
LIHC	TCGA-DD-A3A0-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236716880:236717039:236717897:236718052:236718595:236718764,	236717898	236718052	236718039	236718039	Frame_Shift_Del	A	-	p.F1979fs
LIHC	TCGA-DD-A3A0-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236729945:236730176:236732295:236732424:236734650:236734772,	236732296	236732424	236732386	236732386	Frame_Shift_Del	A	-	p.F1329fs
LIHC	TCGA-DD-A3A0-01	HEATR1	ENST00000366581.2	chr1	236736024:236736128:236737501:236737633:236739518:236739677,	236737502	236737633	236737542	236737542	Frame_Shift_Del	T	-	p.N1140fs
LIHC	TCGA-DD-A3A0-01	MTR	ENST00000366577.5,ENST00000418145.2,ENST00000535889.1,ENST00000463959.1	chr1	236976037:236976144:236978903:236978963:236979748:236979843,	236978904	236978963	236978923	236978923	Frame_Shift_Del	A	-	p.Q210fs
LIHC	TCGA-DD-A3A0-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000463959.1	chr1	237001713:237001899:237013643:237013823:237015820:237015937,	237013644	237013823	237013661	237013661	Frame_Shift_Del	A	-	p.T511fs
LIHC	TCGA-DD-A3A0-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370325	240370325	Frame_Shift_Del	T	-	p.I738fs
LIHC	TCGA-DD-A3A0-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371203	240371203	Frame_Shift_Del	C	-	p.P1035fs
LIHC	TCGA-DD-A3A0-01	WDR64	ENST00000425826.2,ENST00000468967.2,ENST00000366552.2,ENST00000437684.2,ENST00000414635.1	chr1	241951150:241951336:241953892:241953998:241958508:241958589,	241953893	241953998	241953922	241953922	Frame_Shift_Del	T	-	p.L964fs
LIHC	TCGA-DD-A3A0-01	SDCCAG8	ENST00000355875.4,ENST00000366541.3,ENST00000343783.6,ENST00000391846.1,ENST00000435549.1	chr1	243468014:243468079:243471290:243471479:243480056:243480144,	243471291	243471479	243471428	243471428	Frame_Shift_Del	T	-	p.L293fs
LIHC	TCGA-DD-A3A0-01	SDCCAG8	ENST00000435549.1	chr1	243542022:243542165:243589728:243589860:243652315:243652442,	243589729	243589860	243589755	243589755	Frame_Shift_Del	A	-	p.E627fs
LIHC	TCGA-DD-A3A0-01	AKT3	ENST00000336199.5,ENST00000263826.5,ENST00000366539.1,ENST00000366540.1	chr1	243708811:243708899:243716030:243716245:243727021:243727150,	243716031	243716245	243716129	243716129	Frame_Shift_Del	A	-	p.F355fs
LIHC	TCGA-DD-A3A0-01	HNRNPU	ENST00000483966.1,ENST00000366525.3,ENST00000283179.9,ENST00000444376.2	chr1	245020899:245021019:245021312:245021576:245022030:245022143,	245021313	245021576	245021536	245021536	Frame_Shift_Del	T	-	p.N405fs
LIHC	TCGA-DD-A3A0-01	HNRNPU	ENST00000476241.1	chr1	245025762:245025836:245025920:245026032:245026918:245027773,245025762:245025836:245025920:245026032:245026975:245027793,	245025921	245026032	245026021	245026021	Frame_Shift_Del	T	-	p.T216fs
LIHC	TCGA-DD-A3A0-01	SMYD3	ENST00000541742.1,ENST00000490107.1,ENST00000453676.1,ENST00000388985.4	chr1	246093199:246093239:246490502:246490639:246493781:246493839,	246490503	246490639	246490518	246490518	Frame_Shift_Del	A	-	p.F113fs
LIHC	TCGA-DD-A3A0-01	TFB2M	ENST00000544618.1	chr1	246714514:246714604:246719874:246720023:246720682:246720836,246714514:246714604:246719874:246720023:246727647:246727736,	246719875	246720023	246719903	246719903	Frame_Shift_Del	T	-	p.N226fs
LIHC	TCGA-DD-A3A0-01	CNST	ENST00000366513.4	chr1	246729815:246729965:246754813:246755243:246784730:246784886,	246754814	246755243	246755045	246755045	Frame_Shift_Del	C	-	p.P61fs
LIHC	TCGA-DD-A3A0-01	AHCTF1	ENST00000483900.1,ENST00000366508.1,ENST00000326225.3,ENST00000391829.2	chr1	247027225:247027418:247030545:247030653:247030962:247031113,	247030546	247030653	247030553	247030553	Frame_Shift_Del	T	-	p.I1149fs
LIHC	TCGA-DD-A3A0-01	NLRP3	ENST00000336119.3,ENST00000366497.2,ENST00000391828.3,ENST00000366496.2	chr1	247587148:247588901:247592886:247593057:247597404:247597575,	247592887	247593057	247592989	247592989	Frame_Shift_Del	G	-	p.L753fs
LIHC	TCGA-DD-A3A0-01	SH3BP5L	ENST00000366472.5,ENST00000411742.2,ENST00000475978.1	chr1	249105898:249106569:249107187:249107361:249108647:249108809,	249107188	249107361	249107346	249107346	Frame_Shift_Del	C	-	p.E186fs
LIHC	TCGA-DD-A3A0-01	ZNF692	ENST00000366469.5,ENST00000451251.1,ENST00000463519.1,ENST00000366471.3,ENST00000474351.1,ENST00000478107.1,ENST00000427146.1,ENST00000306601.4	chr1	249149582:249149657:249149756:249149834:249149923:249150138,	249149757	249149834	249149794	249149794	Frame_Shift_Del	C	-	p.D313fs
LIHC	TCGA-DD-A3A0-01	SH3YL1	ENST00000403658.1,ENST00000479739.2	chr2	234159:234272:243502:243562:247537:247602,239560:242176:243502:243562:247537:247602,242797:242871:243502:243562:247537:247602,	243503	243562	243536	243536	Frame_Shift_Del	A	-	p.S106fs
LIHC	TCGA-DD-A3A0-01	SNTG2	ENST00000308624.5	chr2	1168777:1168869:1204788:1204916:1243509:1243548,1168777:1168869:1204788:1204916:1241659:1241789,	1204789	1204916	1204902	1204902	Frame_Shift_Del	A	-	p.G235fs
LIHC	TCGA-DD-A3A0-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1651983	1651983	Frame_Shift_Del	T	-	p.N1190fs
LIHC	TCGA-DD-A3A0-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926816	1926816	Frame_Shift_Del	T	-	p.N242fs
LIHC	TCGA-DD-A3A0-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926816	1926816	Frame_Shift_Del	T	-	p.N242fs
LIHC	TCGA-DD-A3A0-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926910	1926910	Frame_Shift_Del	T	-	p.I211fs
LIHC	TCGA-DD-A3A0-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926910	1926910	Frame_Shift_Del	T	-	p.I211fs
LIHC	TCGA-DD-A3A0-01	ADI1	ENST00000382093.5,ENST00000327435.6	chr2	3502697:3502853:3504584:3504764:3517627:3517747,	3504585	3504764	3504640	3504640	Frame_Shift_Del	C	-	p.G116fs
LIHC	TCGA-DD-A3A0-01	COLEC11	ENST00000438814.1,ENST00000403096.3,ENST00000416132.1,ENST00000418971.2,ENST00000349077.4	chr2	3651904:3652060:3685122:3685194:3687867:3687921,3653641:3653833:3685122:3685194:3687867:3687921,3660900:3660972:3685122:3685194:3687867:3687921,	3685123	3685194	3685169	3685169	Frame_Shift_Del	A	-	p.G57fs
LIHC	TCGA-DD-A3A0-01	RSAD2	ENST00000382040.3	chr2	7018153:7018277:7023501:7023663:7027065:7027184,	7023502	7023663	7023506	7023506	Frame_Shift_Del	G	-	p.M117fs
LIHC	TCGA-DD-A3A0-01	RNF144A	ENST00000320892.6,ENST00000416587.1	chr2	7081078:7081278:7137046:7137192:7154584:7154614,	7137047	7137192	7137130	7137130	Frame_Shift_Del	G	-	p.G25fs
LIHC	TCGA-DD-A3A0-01	IAH1	ENST00000545602.1,ENST00000481367.1	chr2	9624560:9624679:9628275:9628521:9634830:9634989,	9628276	9628521	9628363	9628363	Frame_Shift_Del	A	-	p.K106fs
LIHC	TCGA-DD-A3A0-01	TAF1B	ENST00000263663.5	chr2	10008404:10008558:10015993:10016147:10022834:10022934,	10015994	10016147	10016039	10016039	Frame_Shift_Del	A	-	p.Q200fs
LIHC	TCGA-DD-A3A0-01	KLF11	ENST00000305883.1	chr2	10183681:10183885:10186276:10186546:10187776:10187882,	10186277	10186546	10186519	10186519	Frame_Shift_Del	A	-	p.P78fs
LIHC	TCGA-DD-A3A0-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1	chr2	10711998:10712316:10717761:10717864:10729168:10729416,	10717762	10717864	10717826	10717826	Frame_Shift_Del	T	-	p.N578fs
LIHC	TCGA-DD-A3A0-01	ATP6V1C2	ENST00000272238.4,ENST00000480289.1,ENST00000381661.3	chr2	10918697:10918795:10922368:10922501:10923299:10923369,	10922369	10922501	10922482	10922482	Frame_Shift_Del	C	-	p.A347fs
LIHC	TCGA-DD-A3A0-01	PDIA6	ENST00000381611.4,ENST00000272227.3,ENST00000404371.2,ENST00000540494.1,ENST00000404824.2	chr2	10924161:10924452:10925059:10925156:10927406:10927565,	10925060	10925156	10925110	10925110	Frame_Shift_Del	C	-	p.A454fs
LIHC	TCGA-DD-A3A0-01	ROCK2	ENST00000401753.1,ENST00000315872.6	chr2	11348412:11348573:11351806:11351966:11354482:11354589,	11351807	11351966	11351854	11351854	Frame_Shift_Del	T	-	p.N719fs
LIHC	TCGA-DD-A3A0-01	ROCK2	ENST00000401753.1,ENST00000261535.3,ENST00000315872.6	chr2	11355485:11355538:11355635:11355771:11356283:11356332,	11355636	11355771	11355698	11355698	Frame_Shift_Del	T	-	p.N512fs
LIHC	TCGA-DD-A3A0-01	GREB1	ENST00000381483.2,ENST00000263834.5,ENST00000381486.2,ENST00000234142.5	chr2	11696743:11696897:11702588:11702708:11706605:11706782,	11702589	11702708	11702653	11702653	Frame_Shift_Del	C	-	p.G74fs
LIHC	TCGA-DD-A3A0-01	LPIN1	ENST00000449576.2,ENST00000396098.1,ENST00000396099.1	chr2	11913745:11913871:11916211:11916319:11919644:11919771,	11916212	11916319	11916238	11916238	Frame_Shift_Del	C	-	p.A256fs
LIHC	TCGA-DD-A3A0-01	LPIN1	ENST00000256720.2,ENST00000396097.1,ENST00000425416.2,ENST00000449576.2,ENST00000396099.1,ENST00000404113.2	chr2	11945195:11945282:11955213:11955366:11959609:11959724,	11955214	11955366	11955300	11955300	Frame_Shift_Del	G	-	p.R743fs
LIHC	TCGA-DD-A3A0-01	TRIB2	ENST00000381465.2	chr2	12857060:12857136:12863385:12863678:12880451:12882860,	12863386	12863678	12863525	12863525	Frame_Shift_Del	T	-	p.M137fs
LIHC	TCGA-DD-A3A0-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15618368:15618413:15629017:15629146:15644268:15644337,	15629018	15629146	15629049	15629049	Frame_Shift_Del	T	-	p.K351fs
LIHC	TCGA-DD-A3A0-01	NBAS	ENST00000281513.5,ENST00000441750.1	chr2	15644268:15644337:15651335:15651474:15674666:15674765,	15651336	15651474	15651426	15651426	Frame_Shift_Del	T	-	p.K265fs
LIHC	TCGA-DD-A3A0-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17884423:17884559:17888485:17888646:17889905:17890020,	17888486	17888646	17888490	17888490	Frame_Shift_Del	T	-	p.I668fs
LIHC	TCGA-DD-A3A0-01	SMC6	ENST00000351948.4	chr2	17922945:17922996:17927093:17927218:17934892:17935040,	17927094	17927218	17927130	17927130	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-DD-A3A0-01	LAPTM4A	ENST00000175091.4	chr2	20234077:20234176:20234727:20234823:20237076:20237199,	20234728	20234823	20234731	20234731	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-DD-A3A0-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20453582:20453775:20454623:20454745:20454976:20455102,	20454624	20454745	20454673	20454673	Frame_Shift_Del	A	-	p.S943fs
LIHC	TCGA-DD-A3A0-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000442400.1,ENST00000319801.5,ENST00000420234.1	chr2	20512059:20512184:20518297:20518406:20527070:20527139,	20518298	20518406	20518350	20518350	Frame_Shift_Del	T	-	p.K36fs
LIHC	TCGA-DD-A3A0-01	HS1BP3	ENST00000304031.3	chr2	20817581:20819005:20823655:20823791:20824491:20824533,	20823656	20823791	20823747	20823747	Frame_Shift_Del	G	-	p.L277fs
LIHC	TCGA-DD-A3A0-01	APOB	ENST00000233242.1	chr2	21246396:21246564:21247804:21247996:21249659:21249836,	21247805	21247996	21247810	21247810	Frame_Shift_Del	G	-	p.Q811fs
LIHC	TCGA-DD-A3A0-01	ATAD2B	ENST00000238789.5	chr2	24056788:24056948:24080284:24080373:24086250:24086425,	24080285	24080373	24080334	24080334	Frame_Shift_Del	T	-	p.I507fs
LIHC	TCGA-DD-A3A0-01	ATAD2B	ENST00000238789.5,ENST00000366438.2	chr2	24080284:24080373:24086250:24086425:24087678:24087794,	24086251	24086425	24086257	24086257	Frame_Shift_Del	A	-	p.F491fs
LIHC	TCGA-DD-A3A0-01	UBXN2A	ENST00000309033.4,ENST00000446425.2,ENST00000404924.1	chr2	24205765:24205903:24207542:24207701:24222541:24222807,	24207543	24207701	24207552	24207552	Frame_Shift_Del	A	-	p.P145fs
LIHC	TCGA-DD-A3A0-01	TP53I3	ENST00000238721.4,ENST00000335934.4	chr2	24300503:24300631:24303688:24303901:24305754:24306022,24302371:24302510:24303688:24303901:24305754:24306022,	24303689	24303901	24303726	24303726	Frame_Shift_Del	T	-	p.K194fs
LIHC	TCGA-DD-A3A0-01	FAM228B	ENST00000407625.1,ENST00000420135.2	chr2	24357988:24358057:24360778:24360970:24362239:24362320,	24360779	24360970	24360965	24360965	Frame_Shift_Del	A	-	p.K120fs
LIHC	TCGA-DD-A3A0-01	ITSN2	ENST00000406921.3,ENST00000361999.3,ENST00000355123.4	chr2	24477235:24477300:24480756:24480962:24483974:24484119,	24480757	24480962	24480920	24480920	Frame_Shift_Del	A	-	p.W909fs
LIHC	TCGA-DD-A3A0-01	ITSN2	ENST00000361999.3	chr2	24494673:24494810:24498581:24498718:24509080:24509220,	24498582	24498718	24498693	24498693	Frame_Shift_Del	T	-	p.Q658fs
LIHC	TCGA-DD-A3A0-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000407230.1,ENST00000348332.3,ENST00000405141.1	chr2	24951176:24951345:24952369:24952684:24962300:24962402,	24952370	24952684	24952576	24952576	Frame_Shift_Del	T	-	p.A1031fs
LIHC	TCGA-DD-A3A0-01	ADCY3	ENST00000450524.1,ENST00000260600.5,ENST00000455323.1	chr2	25050431:25050477:25050770:25051030:25053577:25053694,	25050771	25051030	25050836	25050836	Frame_Shift_Del	G	-	p.T789fs
LIHC	TCGA-DD-A3A0-01	ADCY3	ENST00000606682.1,ENST00000405392.1	chr2	25050431:25050477:25050770:25050892:25053577:25053694,	25050771	25050892	25050836	25050836	Frame_Shift_Del	G	-	p.T789fs
LIHC	TCGA-DD-A3A0-01	EFR3B	ENST00000401432.3,ENST00000403714.3,ENST00000402191.1	chr2	25326505:25326656:25344541:25344663:25351051:25351201,	25344542	25344663	25344621	25344621	Frame_Shift_Del	A	-	p.E148fs
LIHC	TCGA-DD-A3A0-01	DTNB	ENST00000405222.1,ENST00000407038.3,ENST00000545439.1,ENST00000485845.1,ENST00000398951.2,ENST00000288642.8,ENST00000356599.5,ENST00000406818.3,ENST00000407661.3,ENST00000496972.2,ENST00000407186.1,ENST00000404103.3	chr2	25705664:25705742:25754341:25754466:25799706:25799873,	25754342	25754466	25754396	25754396	Frame_Shift_Del	G	-	p.P316fs
LIHC	TCGA-DD-A3A0-01	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25972564:25973282:25976402:25976508:25978886:25978983,	25976403	25976508	25976435	25976435	Frame_Shift_Del	T	-	p.K370fs
LIHC	TCGA-DD-A3A0-01	HADHA	ENST00000380649.3	chr2	26424017:26424189:26426930:26427065:26432648:26432758,	26426931	26427065	26426999	26426999	Frame_Shift_Del	C	-	p.G384fs
LIHC	TCGA-DD-A3A0-01	HADHB	ENST00000494615.1,ENST00000537713.1,ENST00000317799.5,ENST00000405867.3,ENST00000545822.1	chr2	26502861:26502983:26505712:26505792:26505871:26505919,	26505713	26505792	26505750	26505750	Frame_Shift_Del	A	-	p.E324fs
LIHC	TCGA-DD-A3A0-01	CENPA	ENST00000419525.1	chr2	27014998:27015108:27015369:27015701:27016012:27016194,	27015370	27015701	27015642	27015642	Frame_Shift_Del	A	-	p.K77fs
LIHC	TCGA-DD-A3A0-01	CENPA	ENST00000460030.1,ENST00000335756.4,ENST00000472719.1	chr2	27014998:27015108:27015623:27015701:27016012:27016194,	27015624	27015701	27015642	27015642	Frame_Shift_Del	A	-	p.K77fs
LIHC	TCGA-DD-A3A0-01	AGBL5	ENST00000487078.1,ENST00000489683.1,ENST00000477136.1,ENST00000323064.8,ENST00000360131.4	chr2	27274548:27274661:27275780:27276041:27276269:27276441,	27275781	27276041	27275901	27275901	Frame_Shift_Del	G	-	p.V25fs
LIHC	TCGA-DD-A3A0-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305819	27305819	Frame_Shift_Del	G	-	p.L460fs
LIHC	TCGA-DD-A3A0-01	KHK	ENST00000260598.5	chr2	27317344:27317479:27317667:27317802:27319596:27319669,27315199:27315316:27317667:27317802:27319596:27319669,	27317668	27317802	27317739	27317739	Frame_Shift_Del	C	-	p.T94fs
LIHC	TCGA-DD-A3A0-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000430533.1,ENST00000468045.1	chr2	27354877:27354950:27355097:27355271:27355470:27355488,	27355098	27355271	27355191	27355191	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-DD-A3A0-01	SLC5A6	ENST00000310574.3,ENST00000412471.1,ENST00000408041.1,ENST00000488743.2	chr2	27429350:27429402:27429744:27429810:27430125:27430658,	27429745	27429810	27429786	27429786	Frame_Shift_Del	T	-	p.T140fs
LIHC	TCGA-DD-A3A0-01	CAD	ENST00000264705.4,ENST00000403525.1	chr2	27444085:27444215:27445061:27445204:27445386:27445528,	27445062	27445204	27445177	27445177	Frame_Shift_Del	C	-	p.R156fs
LIHC	TCGA-DD-A3A0-01	CAD	ENST00000264705.4	chr2	27448572:27448794:27448998:27449187:27449392:27449517,	27448999	27449187	27449165	27449165	Frame_Shift_Del	C	-	p.A670fs
LIHC	TCGA-DD-A3A0-01	SLC30A3	ENST00000233535.4,ENST00000497341.1,ENST00000445870.1,ENST00000447008.2	chr2	27478253:27478328:27479253:27479388:27479655:27479761,	27479254	27479388	27479380	27479380	Frame_Shift_Del	G	-	p.R298fs
LIHC	TCGA-DD-A3A0-01	MPV17	ENST00000492879.1	chr2	27535081:27535114:27535860:27535976:27545314:27545389,27535546:27535639:27535860:27535976:27545314:27545389,27535546:27535639:27535860:27535976:27539944:27540040,	27535861	27535976	27535864	27535864	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-DD-A3A0-01	MPV17	ENST00000426513.2,ENST00000497981.1,ENST00000402722.1	chr2	27535546:27535639:27535860:27535941:27545314:27545389,	27535861	27535941	27535864	27535864	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-DD-A3A0-01	MPV17	ENST00000405983.1	chr2	27535546:27535639:27535860:27536021:27545314:27545389,	27535861	27536021	27535864	27535864	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-DD-A3A0-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27556840:27556866:27558464:27558573:27558783:27558895,	27558465	27558573	27558498	27558498	Frame_Shift_Del	G	-	p.H515fs
LIHC	TCGA-DD-A3A0-01	EIF2B4	ENST00000405940.2	chr2	27590891:27591006:27591238:27591330:27591520:27591594,27590891:27590980:27591238:27591330:27591520:27591594,	27591239	27591330	27591276	27591276	Frame_Shift_Del	G	-	p.Q206fs
LIHC	TCGA-DD-A3A0-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658018	27658018	Frame_Shift_Del	C	-	p.D195fs
LIHC	TCGA-DD-A3A0-01	IFT172	ENST00000507184.1,ENST00000260570.3,ENST00000509128.1,ENST00000443889.1	chr2	27676250:27676380:27676496:27676606:27676848:27676954,	27676497	27676606	27676501	27676501	Frame_Shift_Del	C	-	p.A1273fs
LIHC	TCGA-DD-A3A0-01	IFT172	ENST00000507184.1,ENST00000260570.3	chr2	27688277:27688385:27688612:27688749:27693794:27693962,	27688613	27688749	27688658	27688658	Frame_Shift_Del	C	-	p.G595fs
LIHC	TCGA-DD-A3A0-01	IFT172	ENST00000507184.1,ENST00000260570.3	chr2	27688277:27688385:27688612:27688749:27693794:27693962,	27688613	27688749	27688718	27688718	Frame_Shift_Del	C	-	p.G575fs
LIHC	TCGA-DD-A3A0-01	IFT172	ENST00000416524.2,ENST00000359466.6,ENST00000507184.1,ENST00000511842.1,ENST00000476264.2,ENST00000260570.3	chr2	27700083:27700187:27700425:27700479:27700861:27701023,	27700426	27700479	27700433	27700433	Frame_Shift_Del	T	-	p.N405fs
LIHC	TCGA-DD-A3A0-01	GPN1	ENST00000424214.1,ENST00000264718.3,ENST00000503738.1,ENST00000458167.2,ENST00000461249.1,ENST00000610189.1,ENST00000515877.1,ENST00000407583.3	chr2	27864106:27864146:27865295:27865386:27870702:27870761,	27865296	27865386	27865343	27865343	Frame_Shift_Del	A	-	p.R310fs
LIHC	TCGA-DD-A3A0-01	SUPT7L	ENST00000405491.1	chr2	27880301:27880536:27883850:27884468:27885045:27885148,	27883851	27884468	27884120	27884120	Frame_Shift_Del	G	-	p.P50fs
LIHC	TCGA-DD-A3A0-01	SUPT7L	ENST00000337768.5	chr2	27880301:27880536:27883850:27884255:27885045:27885148,	27883851	27884255	27884120	27884120	Frame_Shift_Del	G	-	p.P50fs
LIHC	TCGA-DD-A3A0-01	SLC4A1AP	ENST00000326019.6	chr2	27900604:27900791:27905114:27905226:27907903:27908144,	27905115	27905226	27905224	27905224	Frame_Shift_Del	G	-	p.G625fs
LIHC	TCGA-DD-A3A0-01	RBKS	ENST00000444339.2,ENST00000302188.3,ENST00000449378.1	chr2	28069908:28069971:28070900:28070964:28081305:28081438,	28070901	28070964	28070920	28070920	Frame_Shift_Del	T	-	p.K89fs
LIHC	TCGA-DD-A3A0-01	FOSL2	ENST00000264716.4	chr2	28615724:28616689:28626973:28627225:28631625:28631669,	28626974	28627225	28627120	28627120	Frame_Shift_Del	C	-	p.S83fs
LIHC	TCGA-DD-A3A0-01	PLB1	ENST00000327757.5,ENST00000404858.1,ENST00000422425.2	chr2	28815527:28815586:28816547:28816621:28816838:28818924,28815527:28815586:28816547:28816621:28820871:28820915,	28816548	28816621	28816583	28816583	Frame_Shift_Del	C	-	p.L750fs
LIHC	TCGA-DD-A3A0-01	SPDYA	ENST00000334056.5,ENST00000379579.4	chr2	29052015:29052185:29063037:29063335:29072715:29073300,	29063038	29063335	29063182	29063182	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-DD-A3A0-01	TRMT61B	ENST00000439947.1	chr2	29073193:29073271:29075273:29075365:29083983:29084174,	29075274	29075365	29075320	29075320	Frame_Shift_Del	A	-	p.Y347fs
LIHC	TCGA-DD-A3A0-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379233	29379233	Frame_Shift_Del	A	-	p.S393fs
LIHC	TCGA-DD-A3A0-01	LBH	ENST00000406087.1	chr2	30454402:30454630:30457270:30457377:30480298:30480414,	30457271	30457377	30457346	30457346	Frame_Shift_Del	C	-	p.S34fs
LIHC	TCGA-DD-A3A0-01	XDH	ENST00000379416.3	chr2	31571764:31571846:31572551:31572697:31572897:31573089,	31572552	31572697	31572684	31572684	Frame_Shift_Del	T	-	p.N946fs
LIHC	TCGA-DD-A3A0-01	DPY30	ENST00000422413.1,ENST00000342166.5,ENST00000452582.1,ENST00000430665.1,ENST00000414013.1	chr2	32264347:32264395:32264489:32264561:32264801:32264823,	32264490	32264561	32264500	32264500	Frame_Shift_Del	C	-	p.G9fs
LIHC	TCGA-DD-A3A0-01	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32366972:32367015:32368404:32368484:32370005:32370076,	32368405	32368484	32368460	32368460	Frame_Shift_Del	A	-	p.Q531fs
LIHC	TCGA-DD-A3A0-01	SLC30A6	ENST00000282587.5,ENST00000357055.3,ENST00000454324.1,ENST00000435660.1,ENST00000379343.2,ENST00000457724.1	chr2	32390950:32390972:32396355:32396442:32399131:32399216,	32396356	32396442	32396392	32396392	Frame_Shift_Del	T	-	p.F15fs
LIHC	TCGA-DD-A3A0-01	BIRC6	ENST00000421745.2	chr2	32626230:32626453:32626530:32626691:32631566:32631625,	32626531	32626691	32626686	32626686	Frame_Shift_Del	A	-	p.G471fs
LIHC	TCGA-DD-A3A0-01	BIRC6	ENST00000421745.2	chr2	32710709:32710826:32712713:32712868:32713654:32713781,	32712714	32712868	32712752	32712752	Frame_Shift_Del	G	-	p.G2619fs
LIHC	TCGA-DD-A3A0-01	BIRC6	ENST00000421745.2	chr2	32718606:32718734:32724613:32725176:32726779:32726955,	32724614	32725176	32724825	32724825	Frame_Shift_Del	G	-	p.G2895fs
LIHC	TCGA-DD-A3A0-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859010	32859010	Frame_Shift_Del	C	-	p.P113fs
LIHC	TCGA-DD-A3A0-01	TTC27	ENST00000317907.4	chr2	32958894:32958990:32961760:32961883:32983358:32983586,	32961761	32961883	32961807	32961807	Frame_Shift_Del	C	-	p.A459fs
LIHC	TCGA-DD-A3A0-01	RASGRP3	ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33783277:33783403:33783738:33784097:33787795:33789672,	33783739	33784097	33783975	33783975	Frame_Shift_Del	A	-	p.K648fs
LIHC	TCGA-DD-A3A0-01	CRIM1	ENST00000280527.2	chr2	36669757:36669878:36691676:36691798:36704031:36704214,	36691677	36691798	36691756	36691756	Frame_Shift_Del	G	-	p.G317fs
LIHC	TCGA-DD-A3A0-01	VIT	ENST00000379241.3,ENST00000457137.2,ENST00000389975.3,ENST00000379242.3,ENST00000497382.1,ENST00000401530.1,ENST00000404084.1	chr2	36970242:36970399:36982063:36982197:36986111:36986189,	36982064	36982197	36982083	36982083	Frame_Shift_Del	G	-	p.G100fs
LIHC	TCGA-DD-A3A0-01	STRN	ENST00000263918.4	chr2	37111074:37111218:37113858:37113969:37121040:37121176,	37113859	37113969	37113875	37113875	Frame_Shift_Del	C	-	p.G342fs
LIHC	TCGA-DD-A3A0-01	CEBPZ	ENST00000234170.5,ENST00000489306.1	chr2	37428926:37429046:37429926:37430008:37430092:37430151,	37429927	37430008	37429970	37429970	Frame_Shift_Del	A	-	p.F994fs
LIHC	TCGA-DD-A3A0-01	CEBPZ	ENST00000234170.5	chr2	37443458:37443561:37444126:37444180:37447527:37447616,	37444127	37444180	37444145	37444145	Frame_Shift_Del	A	-	p.F730fs
LIHC	TCGA-DD-A3A0-01	PRKD3	ENST00000379066.1,ENST00000494667.1,ENST00000234179.2	chr2	37505008:37505132:37506888:37507072:37509684:37509762,	37506889	37507072	37506994	37506994	Frame_Shift_Del	C	-	p.G356fs
LIHC	TCGA-DD-A3A0-01	RMDN2	ENST00000407257.1,ENST00000234195.3	chr2	38177653:38177738:38178375:38179344:38201182:38201357,	38178376	38179344	38179152	38179152	Frame_Shift_Del	T	-	p.I265fs
LIHC	TCGA-DD-A3A0-01	ATL2	ENST00000539122.1,ENST00000378954.4,ENST00000402054.1,ENST00000405384.2,ENST00000452935.2	chr2	38523049:38523255:38525285:38525717:38526397:38526469,	38525286	38525717	38525518	38525518	Frame_Shift_Del	T	-	p.N467fs
LIHC	TCGA-DD-A3A0-01	ATL2	ENST00000539122.1,ENST00000378954.4,ENST00000402054.1,ENST00000405384.2,ENST00000452935.2	chr2	38523049:38523255:38525285:38525717:38526397:38526469,	38525286	38525717	38525617	38525617	Frame_Shift_Del	T	-	p.K434fs
LIHC	TCGA-DD-A3A0-01	DHX57	ENST00000452978.1	chr2	39025493:39025584:39029856:39030057:39033700:39033835,39025493:39025584:39029856:39030057:39040962:39041037,	39029857	39030057	39030009	39030009	Frame_Shift_Del	T	-	p.T1289fs
LIHC	TCGA-DD-A3A0-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39250286:39250366:39251150:39251278:39262352:39262451,	39251151	39251278	39251173	39251173	Frame_Shift_Del	T	-	p.S394fs
LIHC	TCGA-DD-A3A0-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39285813:39285945:39294768:39294894:39347476:39347591,	39294769	39294894	39294789	39294789	Frame_Shift_Del	G	-	p.R65fs
LIHC	TCGA-DD-A3A0-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39285813:39285945:39294768:39294894:39347476:39347591,	39294769	39294894	39294815	39294815	Frame_Shift_Del	A	-	p.L56fs
LIHC	TCGA-DD-A3A0-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000510781.2,ENST00000403537.3,ENST00000505747.1,ENST00000454352.2	chr2	39997156:39997259:39998644:39998780:40006253:40006380,	39998645	39998780	39998752	39998752	Frame_Shift_Del	A	-	p.F52fs
LIHC	TCGA-DD-A3A0-01	THUMPD2	ENST00000530522.1	chr2	39997156:39997259:39998654:39998780:40006253:40006380,	39998655	39998780	39998752	39998752	Frame_Shift_Del	A	-	p.F52fs
LIHC	TCGA-DD-A3A0-01	MTA3	ENST00000430763.1,ENST00000407270.3,ENST00000406911.1,ENST00000405094.1,ENST00000454356.1,ENST00000409019.1	chr2	42722302:42722394:42797576:42797644:42806246:42806340,42795885:42795913:42797576:42797644:42806246:42806340,	42797577	42797644	42797617	42797617	Frame_Shift_Del	A	-	p.L23fs
LIHC	TCGA-DD-A3A0-01	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43926790	43926790	Frame_Shift_Del	G	-	p.M231fs
LIHC	TCGA-DD-A3A0-01	DYNC2LI1	ENST00000406852.3,ENST00000479242.1,ENST00000443170.3,ENST00000605786.1,ENST00000398823.2	chr2	44001224:44001285:44003920:44004038:44010658:44010693,	44003921	44004038	44004030	44004030	Frame_Shift_Del	A	-	p.K40fs
LIHC	TCGA-DD-A3A0-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44041615:44041728:44047053:44047239:44049935:44050074,	44047054	44047239	44047079	44047079	Frame_Shift_Del	C	-	p.V147fs
LIHC	TCGA-DD-A3A0-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44041615:44041728:44047053:44047239:44049935:44050074,	44047054	44047239	44047175	44047175	Frame_Shift_Del	G	-	p.H115fs
LIHC	TCGA-DD-A3A0-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44047053:44047239:44049935:44050074:44051051:44051257,	44049936	44050074	44049980	44049980	Frame_Shift_Del	G	-	p.P78fs
LIHC	TCGA-DD-A3A0-01	ABCG5	ENST00000260645.1	chr2	44052027:44052157:44053520:44053660:44055121:44055254,	44053521	44053660	44053538	44053538	Frame_Shift_Del	G	-	p.R253fs
LIHC	TCGA-DD-A3A0-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44058907:44059006:44059085:44059222:44064972:44065094,	44059086	44059222	44059211	44059211	Frame_Shift_Del	T	-	p.T13fs
LIHC	TCGA-DD-A3A0-01	LRPPRC	ENST00000409659.1,ENST00000409946.1	chr2	44206964:44207087:44209376:44209573:44222937:44223117,	44209377	44209573	44209500	44209500	Frame_Shift_Del	A	-	p.S76fs
LIHC	TCGA-DD-A3A0-01	PREPL	ENST00000410081.1,ENST00000409411.1,ENST00000409272.1,ENST00000409957.1,ENST00000426481.1,ENST00000541738.1,ENST00000425263.1,ENST00000260648.6,ENST00000409936.1	chr2	44556075:44556251:44559597:44559795:44566285:44566502,44556075:44556251:44559597:44559795:44565489:44565675,	44559598	44559795	44559660	44559660	Frame_Shift_Del	T	-	p.T342fs
LIHC	TCGA-DD-A3A0-01	PREPL	ENST00000378511.3,ENST00000410081.1,ENST00000409411.1,ENST00000409272.1,ENST00000438314.1,ENST00000409957.1,ENST00000426481.1,ENST00000541738.1,ENST00000425263.1,ENST00000260648.6,ENST00000378520.3,ENST00000409936.1	chr2	44571046:44571090:44571658:44571725:44573406:44573520,	44571659	44571725	44571704	44571704	Frame_Shift_Del	A	-	p.Y34fs
LIHC	TCGA-DD-A3A0-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607658	46607658	Frame_Shift_Del	C	-	p.S616fs
LIHC	TCGA-DD-A3A0-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607749	46607749	Frame_Shift_Del	T	-	p.H646fs
LIHC	TCGA-DD-A3A0-01	EPAS1	ENST00000263734.3,ENST00000466465.1	chr2	46609113:46609228:46609563:46609737:46611647:46613835,	46609564	46609737	46609673	46609673	Frame_Shift_Del	C	-	p.F799fs
LIHC	TCGA-DD-A3A0-01	RHOQ	ENST00000238738.4	chr2	46770287:46770327:46770892:46770951:46803225:46803388,	46770893	46770951	46770906	46770906	Frame_Shift_Del	G	-	p.V52fs
LIHC	TCGA-DD-A3A0-01	MCFD2	ENST00000319466.4,ENST00000412438.1,ENST00000409973.1,ENST00000409218.1,ENST00000409207.1,ENST00000409105.1	chr2	47132604:47132733:47134948:47135108:47142861:47142919,47132604:47132733:47134948:47135108:47168710:47168853,47132604:47132733:47134948:47135108:47136161:47136211,	47134949	47135108	47135023	47135023	Frame_Shift_Del	T	-	p.M79fs
LIHC	TCGA-DD-A3A0-01	TTC7A	ENST00000394850.2,ENST00000409245.1,ENST00000441914.1,ENST00000319190.5,ENST00000263737.6	chr2	47183977:47184146:47202111:47202242:47205930:47206046,	47202112	47202242	47202124	47202124	Frame_Shift_Del	A	-	p.E177fs
LIHC	TCGA-DD-A3A0-01	TTC7A	ENST00000394850.2,ENST00000409825.1,ENST00000491786.1,ENST00000409245.1,ENST00000441914.1,ENST00000484061.1,ENST00000319190.5,ENST00000263737.6	chr2	47278967:47279019:47287907:47288110:47300840:47301062,	47287908	47288110	47288007	47288007	Frame_Shift_Del	G	-	p.R751fs
LIHC	TCGA-DD-A3A0-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47639552:47639699:47641407:47641557:47643434:47643568,	47641408	47641557	47641494	47641494	Frame_Shift_Del	T	-	p.T293fs
LIHC	TCGA-DD-A3A0-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693895	47693895	Frame_Shift_Del	A	-	p.K537fs
LIHC	TCGA-DD-A3A0-01	MSH6	ENST00000445503.1	chr2	48010308:48010632:48018065:48018262:48023032:48023175,48010308:48010632:48018065:48018262:48025749:48025766,	48018066	48018262	48018114	48018114	Frame_Shift_Del	C	-	p.Y103fs
LIHC	TCGA-DD-A3A0-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1,ENST00000434523.2	chr2	48049356:48049442:48050281:48050499:48059487:48059590,	48050282	48050499	48050330	48050330	Frame_Shift_Del	T	-	p.N524fs
LIHC	TCGA-DD-A3A0-01	PPP1R21	ENST00000449090.2,ENST00000281394.4,ENST00000294952.8	chr2	48667995:48668149:48678146:48678215:48681733:48681867,	48678147	48678215	48678171	48678171	Frame_Shift_Del	A	-	p.K29fs
LIHC	TCGA-DD-A3A0-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8	chr2	48687233:48687292:48688276:48688371:48692075:48692128,	48688277	48688371	48688348	48688348	Frame_Shift_Del	A	-	p.E224fs
LIHC	TCGA-DD-A3A0-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8	chr2	48698449:48698506:48701821:48701958:48707062:48707155,	48701822	48701958	48701898	48701898	Frame_Shift_Del	A	-	p.K390fs
LIHC	TCGA-DD-A3A0-01	PPP1R21	ENST00000431614.1,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8,ENST00000455978.1	chr2	48713769:48713897:48718156:48718309:48725631:48725640,48713769:48713897:48718156:48718309:48722817:48722910,	48718157	48718309	48718274	48718274	Frame_Shift_Del	A	-	p.K523fs
LIHC	TCGA-DD-A3A0-01	NRXN1	ENST00000401710.1,ENST00000406316.2,ENST00000406859.3,ENST00000342183.5	chr2	50170850:50170929:50280408:50280728:50318460:50318632,	50280409	50280728	50280531	50280531	Frame_Shift_Del	T	-	p.T1376fs
LIHC	TCGA-DD-A3A0-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54096512:54096675:54101475:54101631:54102763:54102892,	54101476	54101631	54101495	54101495	Frame_Shift_Del	A	-	p.L1694fs
LIHC	TCGA-DD-A3A0-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54119944:54120097:54120810:54120936:54122143:54122213,	54120811	54120936	54120851	54120851	Frame_Shift_Del	C	-	p.G1333fs
LIHC	TCGA-DD-A3A0-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54125437:54125491:54127017:54127154:54128486:54128696,	54127018	54127154	54127105	54127105	Frame_Shift_Del	T	-	p.N1112fs
LIHC	TCGA-DD-A3A0-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252753	55252753	Frame_Shift_Del	T	-	p.I828fs
LIHC	TCGA-DD-A3A0-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252761	55252761	Frame_Shift_Del	T	-	p.K825fs
LIHC	TCGA-DD-A3A0-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55254255	55254255	Frame_Shift_Del	T	-	p.N327fs
LIHC	TCGA-DD-A3A0-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55254556	55254556	Frame_Shift_Del	C	-	p.V227fs
LIHC	TCGA-DD-A3A0-01	CLHC1	ENST00000463300.1	chr2	55445480:55445736:55449370:55449629:55459371:55459399,	55449371	55449629	55449477	55449477	Frame_Shift_Del	A	-	p.L24fs
LIHC	TCGA-DD-A3A0-01	MTIF2	ENST00000394600.3,ENST00000263629.4,ENST00000403721.1	chr2	55476530:55476670:55479612:55479789:55481176:55481337,	55479613	55479789	55479772	55479772	Frame_Shift_Del	C	-	p.E228fs
LIHC	TCGA-DD-A3A0-01	MTIF2	ENST00000417741.1	chr2	55481176:55481337:55481789:55481961:55489451:55489563,55479711:55479789:55481789:55481961:55489451:55489563,	55481790	55481961	55481808	55481808	Frame_Shift_Del	T	-	p.N162fs
LIHC	TCGA-DD-A3A0-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544393	55544393	Frame_Shift_Del	T	-	p.N1232fs
LIHC	TCGA-DD-A3A0-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544399	55544399	Frame_Shift_Del	T	-	p.N1230fs
LIHC	TCGA-DD-A3A0-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544412	55544412	Frame_Shift_Del	T	-	p.M1226fs
LIHC	TCGA-DD-A3A0-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55563816:55563954:55566599:55566784:55570783:55570928,	55566600	55566784	55566624	55566624	Frame_Shift_Del	T	-	p.K498fs
LIHC	TCGA-DD-A3A0-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55563816:55563954:55566599:55566784:55570783:55570928,	55566600	55566784	55566641	55566641	Frame_Shift_Del	T	-	p.I493fs
LIHC	TCGA-DD-A3A0-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55573310:55573469:55576653:55576735:55582714:55582887,	55576654	55576735	55576686	55576686	Frame_Shift_Del	T	-	p.M284fs
LIHC	TCGA-DD-A3A0-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2,ENST00000415489.1	chr2	55894125:55894228:55894996:55895093:55898453:55898503,	55894997	55895093	55895026	55895026	Frame_Shift_Del	A	-	p.F348fs
LIHC	TCGA-DD-A3A0-01	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58311223:58311273:58312015:58312085:58313473:58313561,	58312016	58312085	58312072	58312072	Frame_Shift_Del	A	-	p.A81fs
LIHC	TCGA-DD-A3A0-01	FANCL	ENST00000403676.1,ENST00000402135.3,ENST00000449070.1,ENST00000233741.4,ENST00000403295.3,ENST00000446381.1	chr2	58388757:58388773:58390000:58390082:58390163:58390209,	58390001	58390082	58390056	58390056	Frame_Shift_Del	T	-	p.N288fs
LIHC	TCGA-DD-A3A0-01	PAPOLG	ENST00000496283.1,ENST00000238714.3,ENST00000412217.1,ENST00000414060.1	chr2	61014081:61014201:61014645:61014755:61018895:61019017,	61014646	61014755	61014705	61014705	Frame_Shift_Del	A	-	p.E449fs
LIHC	TCGA-DD-A3A0-01	REL	ENST00000295025.8,ENST00000394479.3	chr2	61121531:61121680:61128126:61128218:61144011:61144152,	61128127	61128218	61128158	61128158	Frame_Shift_Del	A	-	p.K113fs
LIHC	TCGA-DD-A3A0-01	REL	ENST00000394479.3	chr2	61147175:61147244:61147708:61147777:61148897:61150119,	61147709	61147777	61147771	61147771	Frame_Shift_Del	A	-	p.K362fs
LIHC	TCGA-DD-A3A0-01	PEX13	ENST00000295030.5	chr2	61244864:61244986:61258553:61259248:61272860:61272986,	61258554	61259248	61258989	61258989	Frame_Shift_Del	A	-	p.T176fs
LIHC	TCGA-DD-A3A0-01	PEX13	ENST00000295030.5	chr2	61244864:61244986:61258553:61259248:61272860:61272986,	61258554	61259248	61259004	61259004	Frame_Shift_Del	T	-	p.A181fs
LIHC	TCGA-DD-A3A0-01	PEX13	ENST00000295030.5	chr2	61258553:61259248:61272860:61272986:61275606:61279125,	61272861	61272986	61272942	61272942	Frame_Shift_Del	A	-	p.E290fs
LIHC	TCGA-DD-A3A0-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61298792:61298927:61304054:61304293:61308586:61308645,61300592:61300686:61304054:61304293:61308586:61308645,	61304055	61304293	61304106	61304106	Frame_Shift_Del	T	-	p.D161fs
LIHC	TCGA-DD-A3A0-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61298792:61298927:61304054:61304293:61308586:61308645,61300592:61300686:61304054:61304293:61308586:61308645,	61304055	61304293	61304248	61304248	Frame_Shift_Del	A	-	p.K209fs
LIHC	TCGA-DD-A3A0-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61304054:61304293:61308586:61308645:61310288:61310449,	61308587	61308645	61308630	61308630	Frame_Shift_Del	A	-	p.L238fs
LIHC	TCGA-DD-A3A0-01	USP34	ENST00000411912.1,ENST00000436269.1,ENST00000398571.2	chr2	61414684:61415844:61416044:61416204:61417405:61417549,	61416045	61416204	61416051	61416051	Frame_Shift_Del	T	-	p.T3343fs
LIHC	TCGA-DD-A3A0-01	USP34	ENST00000398571.2	chr2	61510279:61510404:61510543:61510584:61512009:61512092,	61510544	61510584	61510575	61510575	Frame_Shift_Del	T	-	p.K1614fs
LIHC	TCGA-DD-A3A0-01	USP34	ENST00000398571.2	chr2	61546307:61546462:61552509:61552592:61558410:61558506,	61552510	61552592	61552537	61552537	Frame_Shift_Del	A	-	p.S996fs
LIHC	TCGA-DD-A3A0-01	XPO1	ENST00000428210.1,ENST00000481073.1,ENST00000406957.1,ENST00000401558.2,ENST00000404992.2	chr2	61709514:61709674:61710091:61710226:61711071:61711240,	61710092	61710226	61710196	61710196	Frame_Shift_Del	T	-	p.N903fs
LIHC	TCGA-DD-A3A0-01	XPO1	ENST00000481073.1,ENST00000406957.1,ENST00000401558.2,ENST00000404992.2	chr2	61719701:61719883:61720049:61720188:61721028:61721226,	61720050	61720188	61720116	61720116	Frame_Shift_Del	C	-	p.V441fs
LIHC	TCGA-DD-A3A0-01	FAM161A	ENST00000405894.3,ENST00000456262.1	chr2	62054238:62054393:62063144:62063244:62066555:62066659,	62063145	62063244	62063156	62063156	Frame_Shift_Del	T	-	p.R614fs
LIHC	TCGA-DD-A3A0-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62066691	62066691	Frame_Shift_Del	A	-	p.L483fs
LIHC	TCGA-DD-A3A0-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62066691	62066691	Frame_Shift_Del	A	-	p.L483fs
LIHC	TCGA-DD-A3A0-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62066725	62066725	Frame_Shift_Del	T	-	p.I472fs
LIHC	TCGA-DD-A3A0-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62066725	62066725	Frame_Shift_Del	T	-	p.I472fs
LIHC	TCGA-DD-A3A0-01	CCT4	ENST00000538252.1,ENST00000394440.3,ENST00000544079.1,ENST00000544185.1	chr2	62096574:62096688:62103229:62103369:62104054:62104161,62100331:62100428:62103229:62103369:62104054:62104161,	62103230	62103369	62103241	62103241	Frame_Shift_Del	T	-	p.K302fs
LIHC	TCGA-DD-A3A0-01	COMMD1	ENST00000311832.5	chr2	62132892:62132993:62227835:62228117:62362965:62363114,	62227836	62228117	62227964	62227964	Frame_Shift_Del	A	-	p.T103fs
LIHC	TCGA-DD-A3A0-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176136	63176136	Frame_Shift_Del	A	-	p.K755fs
LIHC	TCGA-DD-A3A0-01	WDPCP	ENST00000409354.2,ENST00000272321.7,ENST00000398544.3,ENST00000409120.1,ENST00000409199.1	chr2	63380048:63380080:63380629:63380709:63401804:63401967,	63380630	63380709	63380656	63380656	Frame_Shift_Del	A	-	p.L519fs
LIHC	TCGA-DD-A3A0-01	WDPCP	ENST00000418148.1	chr2	63664590:63664688:63666890:63666989:63711737:63711797,	63666891	63666989	63666946	63666946	Frame_Shift_Del	T	-	p.K148fs
LIHC	TCGA-DD-A3A0-01	WDPCP	ENST00000409562.3,ENST00000272321.7,ENST00000493315.1,ENST00000409835.1,ENST00000417238.1	chr2	63664590:63664688:63666890:63667005:63711737:63711797,	63666891	63667005	63666946	63666946	Frame_Shift_Del	T	-	p.K148fs
LIHC	TCGA-DD-A3A0-01	VPS54	ENST00000354504.3,ENST00000409558.4,ENST00000272322.4	chr2	64139673:64139795:64140356:64140444:64141315:64141421,	64140357	64140444	64140372	64140372	Frame_Shift_Del	T	-	p.T651fs
LIHC	TCGA-DD-A3A0-01	PELI1	ENST00000358912.4	chr2	64327531:64327633:64331834:64331964:64335373:64335513,	64331835	64331964	64331882	64331882	Frame_Shift_Del	C	-	p.V52fs
LIHC	TCGA-DD-A3A0-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64779581	64779581	Frame_Shift_Del	T	-	p.F325fs
LIHC	TCGA-DD-A3A0-01	SLC1A4	ENST00000480594.1,ENST00000234256.3,ENST00000531327.1	chr2	65245204:65245399:65245678:65245813:65248045:65248528,	65245679	65245813	65245781	65245781	Frame_Shift_Del	C	-	p.D444fs
LIHC	TCGA-DD-A3A0-01	CEP68	ENST00000377990.2,ENST00000546106.1,ENST00000260569.4	chr2	65283598:65283662:65296532:65296935:65298587:65298750,	65296533	65296935	65296693	65296693	Frame_Shift_Del	G	-	p.G39fs
LIHC	TCGA-DD-A3A0-01	RAB1A	ENST00000356214.7	chr2	65315430:65315824:65316072:65316204:65318116:65318212,65315430:65315824:65316072:65316204:65331867:65331940,65315430:65315824:65316072:65316204:65325104:65325198,	65316073	65316204	65316122	65316122	Frame_Shift_Del	T	-	p.N124fs
LIHC	TCGA-DD-A3A0-01	MEIS1	ENST00000272369.9,ENST00000407092.2,ENST00000488550.1,ENST00000560281.2	chr2	66662689:66663000:66664868:66665095:66666974:66667099,	66664869	66665095	66664890	66664890	Frame_Shift_Del	G	-	p.G13fs
LIHC	TCGA-DD-A3A0-01	ETAA1	ENST00000272342.5	chr2	67626358:67626429:67626681:67626758:67629993:67630106,	67626682	67626758	67626692	67626692	Frame_Shift_Del	A	-	p.R121fs
LIHC	TCGA-DD-A3A0-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049596	69049596	Frame_Shift_Del	A	-	p.Q441fs
LIHC	TCGA-DD-A3A0-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049633	69049633	Frame_Shift_Del	T	-	p.A453fs
LIHC	TCGA-DD-A3A0-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049677	69049677	Frame_Shift_Del	A	-	p.E468fs
LIHC	TCGA-DD-A3A0-01	GMCL1	ENST00000282570.3	chr2	70092031:70092107:70096850:70096996:70098876:70098964,	70096851	70096996	70096926	70096926	Frame_Shift_Del	A	-	p.K432fs
LIHC	TCGA-DD-A3A0-01	SNRNP27	ENST00000450162.2,ENST00000409116.1	chr2	70121095:70121150:70122225:70122346:70123567:70123680,	70122226	70122346	70122238	70122238	Frame_Shift_Del	C	-	p.S16fs
LIHC	TCGA-DD-A3A0-01	ADD2	ENST00000413157.2,ENST00000403045.2,ENST00000355733.3,ENST00000264436.4,ENST00000407644.2,ENST00000430656.1	chr2	70905835:70906093:70910722:70910899:70915155:70915254,	70910723	70910899	70910874	70910874	Frame_Shift_Del	C	-	p.G325fs
LIHC	TCGA-DD-A3A0-01	CLEC4F	ENST00000426626.1,ENST00000272367.2	chr2	71043125:71044244:71046486:71046576:71046906:71047023,	71046487	71046576	71046497	71046497	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-DD-A3A0-01	ANKRD53	ENST00000441349.1	chr2	71206328:71206473:71206790:71206990:71209706:71209825,	71206791	71206990	71206794	71206794	Frame_Shift_Del	T	-	p.F141fs
LIHC	TCGA-DD-A3A0-01	ANKRD53	ENST00000441349.1	chr2	71206328:71206473:71206790:71206990:71209706:71209825,	71206791	71206990	71206816	71206816	Frame_Shift_Del	C	-	p.A148fs
LIHC	TCGA-DD-A3A0-01	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351450	71351450	Frame_Shift_Del	A	-	p.F88fs
LIHC	TCGA-DD-A3A0-01	MPHOSPH10	ENST00000244230.2,ENST00000476969.1	chr2	71371557:71371668:71375128:71375236:71376352:71376417,	71375129	71375236	71375187	71375187	Frame_Shift_Del	C	-	p.A539fs
LIHC	TCGA-DD-A3A0-01	ZNF638	ENST00000377802.2,ENST00000264447.4,ENST00000355812.3	chr2	71503774:71503884:71575882:71577401:71582848:71582898,71558911:71559005:71575882:71577401:71582848:71582910,	71575883	71577401	71576849	71576849	Frame_Shift_Del	A	-	p.P255fs
LIHC	TCGA-DD-A3A0-01	ZNF638	ENST00000409544.1	chr2	71558911:71558995:71575556:71577401:71582848:71582910,	71575557	71577401	71576849	71576849	Frame_Shift_Del	A	-	p.P255fs
LIHC	TCGA-DD-A3A0-01	ZNF638	ENST00000494621.1,ENST00000466975.1,ENST00000377802.2,ENST00000410075.1,ENST00000409544.1,ENST00000475743.1,ENST00000264447.4,ENST00000355812.3,ENST00000464375.1,ENST00000466330.1	chr2	71590282:71590321:71591083:71591382:71592558:71592618,	71591084	71591382	71591299	71591299	Frame_Shift_Del	T	-	p.I545fs
LIHC	TCGA-DD-A3A0-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650512	71650512	Frame_Shift_Del	G	-	p.G1290fs
LIHC	TCGA-DD-A3A0-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650776	71650776	Frame_Shift_Del	A	-	p.K1378fs
LIHC	TCGA-DD-A3A0-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650996	71650996	Frame_Shift_Del	A	-	p.E1451fs
LIHC	TCGA-DD-A3A0-01	DYSF	ENST00000409582.3,ENST00000409762.1,ENST00000409651.1,ENST00000413539.2,ENST00000410041.1,ENST00000410020.3	chr2	71738936:71739051:71740369:71740462:71740845:71741051,	71740370	71740462	71740454	71740454	Frame_Shift_Del	C	-	p.A181fs
LIHC	TCGA-DD-A3A0-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71797728:71797871:71801327:71801501:71816722:71816816,	71801328	71801501	71801492	71801492	Frame_Shift_Del	G	-	p.E1113fs
LIHC	TCGA-DD-A3A0-01	EXOC6B	ENST00000410112.2,ENST00000410104.1,ENST00000272427.6	chr2	72786581:72786650:72802620:72802797:72945231:72945436,	72802621	72802797	72802794	72802794	Frame_Shift_Del	G	-	p.Q227fs
LIHC	TCGA-DD-A3A0-01	CCT7	ENST00000258091.5,ENST00000399032.2,ENST00000539919.1,ENST00000469844.1,ENST00000461290.1	chr2	73467564:73467671:73470131:73470257:73471124:73471157,	73470132	73470257	73470157	73470157	Frame_Shift_Del	C	-	p.T54fs
LIHC	TCGA-DD-A3A0-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73676401	73676401	Frame_Shift_Del	T	-	p.I915fs
LIHC	TCGA-DD-A3A0-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73677342	73677342	Frame_Shift_Del	G	-	p.G1229fs
LIHC	TCGA-DD-A3A0-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717681	73717681	Frame_Shift_Del	A	-	p.V2864fs
LIHC	TCGA-DD-A3A0-01	TPRKB	ENST00000318190.7,ENST00000409716.2	chr2	73957711:73957863:73959289:73959412:73961555:73961715,73957711:73957863:73959289:73959412:73959710:73959827,	73959290	73959412	73959398	73959398	Frame_Shift_Del	A	-	p.F91fs
LIHC	TCGA-DD-A3A0-01	TPRKB	ENST00000409716.2	chr2	73959710:73959827:73961555:73961715:73964428:73964462,	73961556	73961715	73961623	73961623	Frame_Shift_Del	T	-	p.N25fs
LIHC	TCGA-DD-A3A0-01	TPRKB	ENST00000497464.1,ENST00000272424.5,ENST00000484969.1	chr2	73959710:73959827:73961555:73961718:73964428:73964462,73959289:73959412:73961555:73961718:73964428:73964462,	73961556	73961718	73961623	73961623	Frame_Shift_Del	T	-	p.N25fs
LIHC	TCGA-DD-A3A0-01	ACTG2	ENST00000438902.2	chr2	74129486:74129615:74135416:74135910:74136181:74136266,	74135417	74135910	74135850	74135850	Frame_Shift_Del	C	-	p.H102fs
LIHC	TCGA-DD-A3A0-01	ACTG2	ENST00000409624.1,ENST00000345517.3	chr2	74129486:74129615:74135799:74135910:74136181:74136266,	74135800	74135910	74135850	74135850	Frame_Shift_Del	C	-	p.H102fs
LIHC	TCGA-DD-A3A0-01	DGUOK	ENST00000489796.1	chr2	74173845:74174033:74177727:74177859:74185272:74185372,	74177728	74177859	74177732	74177732	Frame_Shift_Del	T	-	p.L155fs
LIHC	TCGA-DD-A3A0-01	DGUOK	ENST00000356837.6,ENST00000264093.4	chr2	74173845:74174033:74177711:74177859:74184251:74184367,	74177712	74177859	74177732	74177732	Frame_Shift_Del	T	-	p.L155fs
LIHC	TCGA-DD-A3A0-01	SLC4A5	ENST00000425249.1,ENST00000444570.1,ENST00000436454.1,ENST00000357822.5,ENST00000346834.4,ENST00000394019.2,ENST00000377632.1,ENST00000377634.4,ENST00000423644.1	chr2	74512899:74513029:74531615:74531807:74542071:74542152,	74531616	74531807	74531665	74531665	Frame_Shift_Del	C	-	p.G74fs
LIHC	TCGA-DD-A3A0-01	SLC4A5	ENST00000425249.1,ENST00000444570.1,ENST00000436454.1,ENST00000357822.5,ENST00000346834.4,ENST00000394019.2,ENST00000377632.1,ENST00000377634.4,ENST00000423644.1	chr2	74512899:74513029:74531615:74531807:74542071:74542152,	74531616	74531807	74531785	74531785	Frame_Shift_Del	C	-	p.G34fs
LIHC	TCGA-DD-A3A0-01	DCTN1	ENST00000409240.1,ENST00000434055.1,ENST00000409567.3	chr2	74598801:74598855:74604558:74604593:74604774:74604853,	74604559	74604593	74604590	74604590	Frame_Shift_Del	C	-	p.G121fs
LIHC	TCGA-DD-A3A0-01	DCTN1	ENST00000409240.1,ENST00000454119.1,ENST00000417090.1,ENST00000434055.1,ENST00000361874.3,ENST00000458655.1,ENST00000409567.3,ENST00000409868.1,ENST00000394003.3	chr2	74604558:74604593:74604774:74604853:74605126:74605372,	74604775	74604853	74604788	74604788	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-DD-A3A0-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755543:74755616:74755877:74756062:74756258:74756409,	74755878	74756062	74755943	74755943	Frame_Shift_Del	G	-	p.P153fs
LIHC	TCGA-DD-A3A0-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74755943	74755943	Frame_Shift_Del	G	-	p.P153fs
LIHC	TCGA-DD-A3A0-01	SEMA4F	ENST00000357877.2,ENST00000420077.1,ENST00000446927.1,ENST00000339773.5	chr2	74902049:74902162:74902288:74902511:74902651:74902761,	74902289	74902511	74902319	74902319	Frame_Shift_Del	T	-	p.F394fs
LIHC	TCGA-DD-A3A0-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000470197.1,ENST00000427862.1,ENST00000409857.3	chr2	75891770:75891909:75893054:75893179:75897263:75897340,	75893055	75893179	75893145	75893145	Frame_Shift_Del	T	-	p.N713fs
LIHC	TCGA-DD-A3A0-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000470197.1,ENST00000409857.3	chr2	75914952:75915103:75916151:75916351:75917094:75917207,	75916152	75916351	75916320	75916320	Frame_Shift_Del	A	-	p.F457fs
LIHC	TCGA-DD-A3A0-01	CTNNA2	ENST00000466387.1,ENST00000496558.1,ENST00000402739.4,ENST00000541047.1,ENST00000361291.4,ENST00000409971.2,ENST00000540488.1	chr2	79878682:79878784:79971512:79971708:80085138:80085192,	79971513	79971708	79971555	79971555	Frame_Shift_Del	A	-	p.K51fs
LIHC	TCGA-DD-A3A0-01	SUCLG1	ENST00000487809.1,ENST00000393868.2	chr2	84652538:84652727:84658631:84658783:84660475:84660559,	84658632	84658783	84658685	84658685	Frame_Shift_Del	T	-	p.I258fs
LIHC	TCGA-DD-A3A0-01	SUCLG1	ENST00000393868.2	chr2	84658631:84658783:84660475:84660559:84668170:84668216,	84660476	84660559	84660512	84660512	Frame_Shift_Del	T	-	p.T214fs
LIHC	TCGA-DD-A3A0-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84756027:84756290:84771356:84771624:84774391:84774526,	84771357	84771624	84771511	84771511	Frame_Shift_Del	T	-	p.F273fs
LIHC	TCGA-DD-A3A0-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84774391:84774526:84774615:84774736:84775411:84775541,	84774616	84774736	84774679	84774679	Frame_Shift_Del	T	-	p.F377fs
LIHC	TCGA-DD-A3A0-01	CAPG	ENST00000449030.1,ENST00000409724.1,ENST00000409670.1,ENST00000263867.4,ENST00000447219.2,ENST00000459793.2,ENST00000409275.1,ENST00000439385.1,ENST00000409921.1	chr2	85628294:85628452:85628651:85628806:85628907:85629063,	85628652	85628806	85628792	85628792	Frame_Shift_Del	G	-	p.R71fs
LIHC	TCGA-DD-A3A0-01	GGCX	ENST00000496962.1,ENST00000423570.1	chr2	85786128:85786198:85787937:85788108:85788508:85788596,	85787938	85788108	85788002	85788002	Frame_Shift_Del	C	-	p.R50fs
LIHC	TCGA-DD-A3A0-01	RNF181	ENST00000441634.1,ENST00000306368.4	chr2	85823656:85823772:85823944:85824054:85824226:85824301,	85823945	85824054	85823955	85823955	Frame_Shift_Del	C	-	p.C76fs
LIHC	TCGA-DD-A3A0-01	USP39	ENST00000490193.1,ENST00000409025.1	chr2	85868177:85868241:85872070:85872206:85875052:85875139,85868177:85868241:85872070:85872206:85875883:85875976,	85872071	85872206	85872123	85872123	Frame_Shift_Del	A	-	p.N494fs
LIHC	TCGA-DD-A3A0-01	SFTPB	ENST00000519937.2,ENST00000409383.1,ENST00000393822.3,ENST00000342375.3,ENST00000428225.1	chr2	85890877:85890970:85892411:85892501:85892728:85892917,	85892412	85892501	85892415	85892415	Frame_Shift_Del	G	-	p.P223fs
LIHC	TCGA-DD-A3A0-01	ST3GAL5	ENST00000525834.2	chr2	86078630:86078826:86079982:86080214:86088303:86088415,	86079983	86080214	86080065	86080065	Frame_Shift_Del	G	-	p.P156fs
LIHC	TCGA-DD-A3A0-01	POLR1A	ENST00000263857.6,ENST00000409681.1	chr2	86297140:86297395:86302152:86302383:86304981:86305104,	86302153	86302383	86302179	86302179	Frame_Shift_Del	C	-	p.A529fs
LIHC	TCGA-DD-A3A0-01	POLR1A	ENST00000424089.1,ENST00000263857.6,ENST00000486964.1,ENST00000409681.1	chr2	86308739:86308829:86310204:86310291:86315688:86315792,	86310205	86310291	86310266	86310266	Frame_Shift_Del	T	-	p.K252fs
LIHC	TCGA-DD-A3A0-01	PTCD3	ENST00000487043.1,ENST00000254630.7	chr2	86361418:86361500:86361961:86362110:86363643:86363685,	86361962	86362110	86362079	86362079	Frame_Shift_Del	T	-	p.F583fs
LIHC	TCGA-DD-A3A0-01	IMMT	ENST00000410111.3,ENST00000442664.2,ENST00000254636.5,ENST00000419070.2,ENST00000409051.2,ENST00000449247.2	chr2	86373190:86373320:86374824:86374956:86378419:86378643,	86374825	86374956	86374928	86374928	Frame_Shift_Del	T	-	p.N477fs
LIHC	TCGA-DD-A3A0-01	MRPL35	ENST00000409180.1,ENST00000337109.4	chr2	86426585:86426656:86433228:86433418:86434305:86434450,	86433229	86433418	86433393	86433393	Frame_Shift_Del	G	-	p.G70fs
LIHC	TCGA-DD-A3A0-01	MRPL35	ENST00000409180.1,ENST00000254644.8,ENST00000337109.4	chr2	86433228:86433418:86434305:86434450:86437602:86437736,	86434306	86434450	86434361	86434361	Frame_Shift_Del	T	-	p.F97fs
LIHC	TCGA-DD-A3A0-01	KDM3A	ENST00000441719.1,ENST00000312912.5,ENST00000542128.1,ENST00000409556.1,ENST00000409064.1	chr2	86697326:86697531:86701898:86702113:86704999:86705152,	86701899	86702113	86701996	86701996	Frame_Shift_Del	A	-	p.K608fs
LIHC	TCGA-DD-A3A0-01	RMND5A	ENST00000283632.4	chr2	86980580:86980681:86992149:86992316:86992981:86993147,	86992150	86992316	86992280	86992280	Frame_Shift_Del	A	-	p.K218fs
LIHC	TCGA-DD-A3A0-01	CIAO1	ENST00000469320.1	chr2	96931983:96932227:96933027:96933207:96933362:96933416,	96933028	96933207	96933086	96933086	Frame_Shift_Del	T	-	p.L56fs
LIHC	TCGA-DD-A3A0-01	CIAO1	ENST00000491394.1	chr2	96931983:96932227:96933058:96933207:96933362:96933416,	96933059	96933207	96933086	96933086	Frame_Shift_Del	T	-	p.L56fs
LIHC	TCGA-DD-A3A0-01	SNRNP200	ENST00000323853.5,ENST00000497539.1	chr2	96940994:96941087:96942641:96942723:96942818:96942979,	96942642	96942723	96942670	96942670	Frame_Shift_Del	C	-	p.G2049fs
LIHC	TCGA-DD-A3A0-01	ARID5A	ENST00000497920.1,ENST00000412735.1,ENST00000357485.3,ENST00000454558.2,ENST00000467498.1	chr2	97215924:97216022:97216310:97216470:97216835:97216902,	97216311	97216470	97216409	97216409	Frame_Shift_Del	G	-	p.R102fs
LIHC	TCGA-DD-A3A0-01	KANSL3	ENST00000354204.6,ENST00000597150.1,ENST00000599854.1,ENST00000447759.1,ENST00000440133.1,ENST00000431828.1,ENST00000444759.1	chr2	97267379:97267513:97267852:97268075:97268489:97268599,	97267853	97268075	97267966	97267966	Frame_Shift_Del	C	-	p.G703fs
LIHC	TCGA-DD-A3A0-01	CNNM3	ENST00000305510.3	chr2	97481986:97483239:97490794:97490938:97492569:97492646,	97490795	97490938	97490813	97490813	Frame_Shift_Del	T	-	p.I415fs
LIHC	TCGA-DD-A3A0-01	ANKRD23	ENST00000462692.1,ENST00000318357.4,ENST00000418232.1	chr2	97506152:97506251:97506523:97506649:97507796:97507922,	97506524	97506649	97506539	97506539	Frame_Shift_Del	G	-	p.P137fs
LIHC	TCGA-DD-A3A0-01	FAHD2B	ENST00000463096.1	chr2	97749943:97750014:97751435:97751935:97755845:97756062,	97751436	97751935	97751923	97751923	Frame_Shift_Del	C	-	p.E159fs
LIHC	TCGA-DD-A3A0-01	FAHD2B	ENST00000414820.1,ENST00000440566.2,ENST00000272610.3	chr2	97751435:97751598:97751875:97751935:97755845:97756062,	97751876	97751935	97751923	97751923	Frame_Shift_Del	C	-	p.E159fs
LIHC	TCGA-DD-A3A0-01	FAHD2B	ENST00000483657.1,ENST00000272610.3	chr2	97755845:97756062:97757198:97757449:97760437:97760557,	97757199	97757449	97757215	97757215	Frame_Shift_Del	G	-	p.L77fs
LIHC	TCGA-DD-A3A0-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97788623:97788730:97790196:97790334:97792803:97792871,	97790197	97790334	97790229	97790229	Frame_Shift_Del	A	-	p.E209fs
LIHC	TCGA-DD-A3A0-01	ACTR1B	ENST00000289228.5	chr2	98272430:98273423:98273614:98273655:98273910:98273972,	98273615	98273655	98273645	98273645	Frame_Shift_Del	G	-	p.P333fs
LIHC	TCGA-DD-A3A0-01	TMEM131	ENST00000186436.5	chr2	98377255:98377377:98378497:98378663:98382576:98382726,	98378498	98378663	98378612	98378612	Frame_Shift_Del	A	-	p.F1592fs
LIHC	TCGA-DD-A3A0-01	TMEM131	ENST00000186436.5	chr2	98382940:98383065:98388759:98388887:98392305:98392481,	98388760	98388887	98388812	98388812	Frame_Shift_Del	T	-	p.S1466fs
LIHC	TCGA-DD-A3A0-01	TMEM131	ENST00000186436.5	chr2	98382940:98383065:98388759:98388887:98392305:98392481,	98388760	98388887	98388871	98388871	Frame_Shift_Del	T	-	p.K1446fs
LIHC	TCGA-DD-A3A0-01	TMEM131	ENST00000186436.5	chr2	98392305:98392481:98408848:98409447:98409857:98410016,	98408849	98409447	98409215	98409215	Frame_Shift_Del	T	-	p.T1260fs
LIHC	TCGA-DD-A3A0-01	TMEM131	ENST00000186436.5	chr2	98431661:98431770:98435075:98435184:98449827:98449889,	98435076	98435184	98435162	98435162	Frame_Shift_Del	T	-	p.N366fs
LIHC	TCGA-DD-A3A0-01	VWA3B	ENST00000490947.2,ENST00000473149.1,ENST00000477737.1,ENST00000432242.1,ENST00000495571.1,ENST00000489630.1	chr2	98914369:98914494:98916541:98916679:98920164:98920265,	98916542	98916679	98916563	98916563	Frame_Shift_Del	A	-	p.K1102fs
LIHC	TCGA-DD-A3A0-01	VWA3B	ENST00000490947.2,ENST00000473149.1,ENST00000477737.1,ENST00000432242.1,ENST00000495571.1,ENST00000489630.1	chr2	98916541:98916679:98920164:98920265:98928281:98928464,	98920165	98920265	98920240	98920240	Frame_Shift_Del	C	-	p.P1167fs
LIHC	TCGA-DD-A3A0-01	INPP4A	ENST00000409851.3,ENST00000545415.1,ENST00000523221.1,ENST00000409016.4,ENST00000409540.3,ENST00000074304.5	chr2	99155990:99156138:99160339:99160470:99162431:99162536,	99160340	99160470	99160399	99160399	Frame_Shift_Del	A	-	p.Q293fs
LIHC	TCGA-DD-A3A0-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232757	99232757	Frame_Shift_Del	T	-	p.A180fs
LIHC	TCGA-DD-A3A0-01	MGAT4A	ENST00000393487.1,ENST00000409391.1,ENST00000414521.2,ENST00000264968.3	chr2	99260385:99260516:99261890:99262005:99271907:99271983,	99261891	99262005	99261956	99261956	Frame_Shift_Del	T	-	p.N275fs
LIHC	TCGA-DD-A3A0-01	MGAT4A	ENST00000393487.1,ENST00000460768.1	chr2	99294883:99294934:99342701:99343030:99347510:99347556,	99342702	99343030	99342734	99342734	Frame_Shift_Del	A	-	p.L21fs
LIHC	TCGA-DD-A3A0-01	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651852	99651852	Frame_Shift_Del	T	-	p.K485fs
LIHC	TCGA-DD-A3A0-01	TSGA10	ENST00000542655.1	chr2	99689480:99689536:99695121:99695276:99697744:99697860,99688268:99688337:99695121:99695276:99697744:99697860,	99695122	99695276	99695195	99695195	Frame_Shift_Del	T	-	p.K270fs
LIHC	TCGA-DD-A3A0-01	TXNDC9	ENST00000264255.3,ENST00000409434.1,ENST00000409705.1	chr2	99938573:99938672:99943997:99944116:99949446:99949705,99938573:99938672:99943997:99944116:99949484:99949705,	99943998	99944116	99944107	99944107	Frame_Shift_Del	A	-	p.S67fs
LIHC	TCGA-DD-A3A0-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99978101	99978101	Frame_Shift_Del	A	-	p.E246fs
LIHC	TCGA-DD-A3A0-01	EIF5B	ENST00000289371.6	chr2	99999242:99999384:100006180:100006312:100006681:100006864,	100006181	100006312	100006258	100006258	Frame_Shift_Del	A	-	p.T783fs
LIHC	TCGA-DD-A3A0-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000465835.1,ENST00000413697.1	chr2	100027156:100027329:100029192:100029413:100035289:100035409,	100029193	100029413	100029366	100029366	Frame_Shift_Del	T	-	p.T667fs
LIHC	TCGA-DD-A3A0-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000465835.1,ENST00000413697.1	chr2	100029192:100029413:100035289:100035409:100037960:100038115,	100035290	100035409	100035342	100035342	Frame_Shift_Del	T	-	p.K633fs
LIHC	TCGA-DD-A3A0-01	LONRF2	ENST00000393437.3,ENST00000409647.1	chr2	100906719:100906882:100910690:100910849:100911893:100912015,	100910691	100910849	100910804	100910804	Frame_Shift_Del	G	-	p.P548fs
LIHC	TCGA-DD-A3A0-01	CHST10	ENST00000264249.3,ENST00000542617.1,ENST00000409701.1	chr2	101009706:101010244:101011970:101012076:101014369:101014604,	101011971	101012076	101012043	101012043	Frame_Shift_Del	T	-	p.N154fs
LIHC	TCGA-DD-A3A0-01	NPAS2	ENST00000433408.1,ENST00000542504.1,ENST00000335681.5	chr2	101598715:101598839:101604540:101604738:101606717:101606908,	101604541	101604738	101604657	101604657	Frame_Shift_Del	C	-	p.G582fs
LIHC	TCGA-DD-A3A0-01	MAP4K4	ENST00000350198.4	chr2	102501648:102501749:102503549:102503723:102504239:102504399,	102503550	102503723	102503711	102503711	Frame_Shift_Del	C	-	p.N1035fs
LIHC	TCGA-DD-A3A0-01	IL1RL2	ENST00000481806.1	chr2	102808384:102808580:102818015:102818175:102828559:102828634,102804315:102804385:102818015:102818175:102828559:102828634,	102818016	102818175	102818031	102818031	Frame_Shift_Del	A	-	p.K169fs
LIHC	TCGA-DD-A3A0-01	IL1RL1	ENST00000404917.2,ENST00000409584.1,ENST00000311734.2,ENST00000233954.1	chr2	102956557:102956732:102957125:102957288:102958682:102958754,	102957126	102957288	102957171	102957171	Frame_Shift_Del	T	-	p.F165fs
LIHC	TCGA-DD-A3A0-01	IL1RL1	ENST00000427077.1	chr2	102957125:102957288:102957647:102957817:102958682:102958754,	102957648	102957817	102957771	102957771	Frame_Shift_Del	T	-	p.V245fs
LIHC	TCGA-DD-A3A0-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000233957.1	chr2	103003320:103003460:103006515:103006677:103010928:103011087,	103006516	103006677	103006638	103006638	Frame_Shift_Del	T	-	p.F358fs
LIHC	TCGA-DD-A3A0-01	TMEM182	ENST00000486293.1	chr2	103380787:103380886:103414321:103414459:103431206:103431563,103380787:103380886:103414321:103414459:103459870:103460352,	103414322	103414459	103414356	103414356	Frame_Shift_Del	G	-	p.L122fs
LIHC	TCGA-DD-A3A0-01	TMEM182	ENST00000486293.1	chr2	103380787:103380886:103414321:103414459:103431206:103431563,103380787:103380886:103414321:103414459:103459870:103460352,	103414322	103414459	103414384	103414384	Frame_Shift_Del	T	-	p.F132fs
LIHC	TCGA-DD-A3A0-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107459975	107459975	Frame_Shift_Del	G	-	p.P153fs
LIHC	TCGA-DD-A3A0-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460077	107460077	Frame_Shift_Del	T	-	p.K119fs
LIHC	TCGA-DD-A3A0-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107460097	107460097	Frame_Shift_Del	A	-	p.S114fs
LIHC	TCGA-DD-A3A0-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088352	109088352	Frame_Shift_Del	C	-	p.A856fs
LIHC	TCGA-DD-A3A0-01	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6,ENST00000447558.1	chr2	109098165:109098272:109098742:109098907:109099517:109099612,	109098743	109098907	109098890	109098890	Frame_Shift_Del	A	-	p.K1110fs
LIHC	TCGA-DD-A3A0-01	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6	chr2	109098742:109098907:109099517:109099622:109100604:109100767,	109099518	109099622	109099572	109099572	Frame_Shift_Del	C	-	p.Q1134fs
LIHC	TCGA-DD-A3A0-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109379941	109379941	Frame_Shift_Del	A	-	p.T982fs
LIHC	TCGA-DD-A3A0-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380295	109380295	Frame_Shift_Del	T	-	p.N1100fs
LIHC	TCGA-DD-A3A0-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380321	109380321	Frame_Shift_Del	T	-	p.I1109fs
LIHC	TCGA-DD-A3A0-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380906	109380906	Frame_Shift_Del	T	-	p.I1304fs
LIHC	TCGA-DD-A3A0-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381591	109381591	Frame_Shift_Del	A	-	p.L1532fs
LIHC	TCGA-DD-A3A0-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383757	109383757	Frame_Shift_Del	A	-	p.R2254fs
LIHC	TCGA-DD-A3A0-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384116	109384116	Frame_Shift_Del	G	-	p.R2374fs
LIHC	TCGA-DD-A3A0-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384168	109384168	Frame_Shift_Del	T	-	p.T2391fs
LIHC	TCGA-DD-A3A0-01	SH3RF3	ENST00000309415.6	chr2	109745996:109746569:109964129:109964405:109988041:109988137,	109964130	109964405	109964207	109964207	Frame_Shift_Del	G	-	p.K217fs
LIHC	TCGA-DD-A3A0-01	SEPT10	ENST00000415095.1,ENST00000397712.2	chr2	110332157:110332344:110350627:110350696:110371374:110371412,110325495:110325553:110350627:110350696:110371374:110371412,110343324:110343415:110350627:110350696:110371374:110371412,	110350628	110350696	110350669	110350669	Frame_Shift_Del	T	-	p.T21fs
LIHC	TCGA-DD-A3A0-01	SEPT10	ENST00000425498.1	chr2	110325495:110325553:110350623:110350696:110371374:110371412,	110350624	110350696	110350669	110350669	Frame_Shift_Del	T	-	p.T21fs
LIHC	TCGA-DD-A3A0-01	BUB1	ENST00000535254.1,ENST00000409311.1,ENST00000302759.6,ENST00000466333.1	chr2	111399695:111399811:111406810:111406954:111408122:111408316,	111406811	111406954	111406911	111406911	Frame_Shift_Del	T	-	p.K729fs
LIHC	TCGA-DD-A3A0-01	ACOXL	ENST00000439055.1,ENST00000417074.1,ENST00000389811.4	chr2	111598947:111598982:111666365:111666482:111691065:111691219,	111666366	111666482	111666385	111666385	Frame_Shift_Del	A	-	p.K270fs
LIHC	TCGA-DD-A3A0-01	MERTK	ENST00000439966.1	chr2	112656240:112656373:112686696:112686881:112702536:112702637,	112686697	112686881	112686743	112686743	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-DD-A3A0-01	MERTK	ENST00000421804.2	chr2	112656240:112656373:112686696:112687117:112702536:112702637,	112686697	112687117	112686743	112686743	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-DD-A3A0-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112740418:112740570:112751827:112751981:112754899:112755053,	112751828	112751981	112751928	112751928	Frame_Shift_Del	G	-	p.R466fs
LIHC	TCGA-DD-A3A0-01	TTL	ENST00000233336.6,ENST00000476615.1	chr2	113258862:113258918:113260488:113260758:113277858:113278002,	113260489	113260758	113260579	113260579	Frame_Shift_Del	T	-	p.N232fs
LIHC	TCGA-DD-A3A0-01	TTL	ENST00000233336.6,ENST00000476615.1	chr2	113258862:113258918:113260488:113260758:113277858:113278002,	113260489	113260758	113260589	113260589	Frame_Shift_Del	A	-	p.K236fs
LIHC	TCGA-DD-A3A0-01	TTL	ENST00000233336.6	chr2	113260491:113260758:113277858:113278002:113286257:113286505,	113277859	113278002	113277926	113277926	Frame_Shift_Del	T	-	p.F315fs
LIHC	TCGA-DD-A3A0-01	POLR1B	ENST00000541869.1,ENST00000537335.1,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2	chr2	113312100:113312155:113315486:113315658:113316869:113316972,113310221:113310393:113315486:113315658:113316869:113316972,	113315487	113315658	113315525	113315525	Frame_Shift_Del	T	-	p.A399fs
LIHC	TCGA-DD-A3A0-01	SLC20A1	ENST00000272542.3	chr2	113404139:113404739:113404900:113405041:113405229:113405315,	113404901	113405041	113404930	113404930	Frame_Shift_Del	T	-	p.F122fs
LIHC	TCGA-DD-A3A0-01	NT5DC4	ENST00000327581.4	chr2	113481670:113481703:113482357:113482465:113482750:113482817,	113482358	113482465	113482421	113482421	Frame_Shift_Del	C	-	p.P259fs
LIHC	TCGA-DD-A3A0-01	NT5DC4	ENST00000497526.1,ENST00000327581.4	chr2	113482750:113482817:113482958:113483129:113483814:113483866,	113482959	113483129	113483028	113483028	Frame_Shift_Del	T	-	p.I319fs
LIHC	TCGA-DD-A3A0-01	CKAP2L	ENST00000302450.6,ENST00000474331.1,ENST00000435431.1,ENST00000541405.1	chr2	113500282:113500346:113503996:113504152:113509843:113510051,	113503997	113504152	113504002	113504002	Frame_Shift_Del	C	-	p.A420fs
LIHC	TCGA-DD-A3A0-01	CKAP2L	ENST00000435431.1	chr2	113509843:113510051:113513553:113513711:113514469:113514791,	113513554	113513711	113513593	113513593	Frame_Shift_Del	T	-	p.N287fs
LIHC	TCGA-DD-A3A0-01	CKAP2L	ENST00000302450.6,ENST00000497357.1,ENST00000435431.1,ENST00000541405.1	chr2	113514770:113514791:113518289:113518341:113520079:113520146,	113518290	113518341	113518293	113518293	Frame_Shift_Del	T	-	p.K51fs
LIHC	TCGA-DD-A3A0-01	IL36G	ENST00000259205.4	chr2	113736196:113736270:113736797:113736902:113737585:113737725,	113736798	113736902	113736897	113736897	Frame_Shift_Del	C	-	p.T52fs
LIHC	TCGA-DD-A3A0-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113940185	113940185	Frame_Shift_Del	G	-	p.W51fs
LIHC	TCGA-DD-A3A0-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113940442	113940442	Frame_Shift_Del	A	-	p.N137fs
LIHC	TCGA-DD-A3A0-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113940843	113940843	Frame_Shift_Del	T	-	p.A270fs
LIHC	TCGA-DD-A3A0-01	RABL2A	ENST00000452831.1	chr2	114391733:114391809:114398929:114399027:114399357:114399441,114392627:114392707:114398929:114399027:114399357:114399441,	114398930	114399027	114398948	114398948	Frame_Shift_Del	A	-	p.Q142fs
LIHC	TCGA-DD-A3A0-01	RABL2A	ENST00000450954.1	chr2	114392627:114392707:114398929:114399057:114399357:114399441,	114398930	114399057	114398948	114398948	Frame_Shift_Del	A	-	p.Q142fs
LIHC	TCGA-DD-A3A0-01	SLC35F5	ENST00000409342.1,ENST00000409106.1,ENST00000245680.2,ENST00000498768.1	chr2	114503853:114503916:114508001:114508145:114512741:114512883,	114508002	114508145	114508072	114508072	Frame_Shift_Del	A	-	p.L116fs
LIHC	TCGA-DD-A3A0-01	DPP10	ENST00000429914.1,ENST00000486885.1,ENST00000393147.2,ENST00000409163.1,ENST00000393146.2,ENST00000410059.1,ENST00000310323.8,ENST00000461250.1,ENST00000419287.1	chr2	116101392:116101488:116257085:116257180:116283473:116283548,	116257086	116257180	116257177	116257177	Frame_Shift_Del	T	-	p.T121fs
LIHC	TCGA-DD-A3A0-01	MARCO	ENST00000327097.4,ENST00000541757.1	chr2	119735046:119735091:119735403:119735511:119738984:119739083,	119735404	119735511	119735490	119735490	Frame_Shift_Del	A	-	p.K171fs
LIHC	TCGA-DD-A3A0-01	DBI	ENST00000535757.1	chr2	120124552:120124666:120125139:120125220:120125763:120125881,	120125140	120125220	120125165	120125165	Frame_Shift_Del	G	-	p.W2fs
LIHC	TCGA-DD-A3A0-01	DBI	ENST00000409094.1	chr2	120124645:120124790:120125134:120125220:120125763:120125879,120124564:120124636:120125134:120125220:120125763:120125879,	120125135	120125220	120125165	120125165	Frame_Shift_Del	G	-	p.W2fs
LIHC	TCGA-DD-A3A0-01	SCTR	ENST00000485440.1	chr2	120223364:120223462:120231028:120231132:120236386:120236494,120221698:120221831:120231028:120231132:120236386:120236494,	120231029	120231132	120231083	120231083	Frame_Shift_Del	G	-	p.P117fs
LIHC	TCGA-DD-A3A0-01	SCTR	ENST00000485440.1	chr2	120223364:120223462:120231028:120231132:120236386:120236494,120221698:120221831:120231028:120231132:120236386:120236494,	120231029	120231132	120231117	120231117	Frame_Shift_Del	T	-	p.N106fs
LIHC	TCGA-DD-A3A0-01	PTPN4	ENST00000433888.1	chr2	120672754:120672818:120677644:120677817:120684173:120684242,120672754:120672818:120677644:120677817:120689999:120690125,	120677645	120677817	120677711	120677711	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-DD-A3A0-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000466241.1,ENST00000443124.1,ENST00000263713.5	chr2	120776723:120776840:120799581:120799686:120830753:120830796,	120799582	120799686	120799616	120799616	Frame_Shift_Del	T	-	p.I72fs
LIHC	TCGA-DD-A3A0-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120833276:120833329:120834546:120834667:120834804:120834892,	120834547	120834667	120834643	120834643	Frame_Shift_Del	T	-	p.I201fs
LIHC	TCGA-DD-A3A0-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000314490.11	chr2	121684936:121685042:121708818:121709021:121712820:121713006,	121708819	121709021	121708914	121708914	Frame_Shift_Del	C	-	p.A117fs
LIHC	TCGA-DD-A3A0-01	TFCP2L1	ENST00000263707.5	chr2	121999934:122000045:122004393:122004546:122005739:122005812,	122004394	122004546	122004503	122004503	Frame_Shift_Del	C	-	p.G183fs
LIHC	TCGA-DD-A3A0-01	CLASP1	ENST00000263710.4,ENST00000541377.1,ENST00000397587.3,ENST00000455322.2	chr2	122287822:122287901:122363276:122363756:122406947:122407052,	122363277	122363756	122363415	122363415	Frame_Shift_Del	T	-	p.K19fs
LIHC	TCGA-DD-A3A0-01	TSN	ENST00000495112.1	chr2	122514815:122514909:122516285:122516382:122518984:122519100,122513260:122513421:122516285:122516382:122518984:122519100,	122516286	122516382	122516329	122516329	Frame_Shift_Del	A	-	p.V68fs
LIHC	TCGA-DD-A3A0-01	BIN1	ENST00000376113.2,ENST00000348750.4	chr2	127807996:127808098:127808377:127808488:127816586:127816731,	127808378	127808488	127808394	127808394	Frame_Shift_Del	G	-	p.P519fs
LIHC	TCGA-DD-A3A0-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128016871:128017024:128018803:128018922:128028911:128029029,	128018804	128018922	128018892	128018892	Frame_Shift_Del	A	-	p.F595fs
LIHC	TCGA-DD-A3A0-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128018803:128018922:128028911:128029029:128030440:128030537,	128028912	128029029	128028945	128028945	Frame_Shift_Del	G	-	p.Q574fs
LIHC	TCGA-DD-A3A0-01	IWS1	ENST00000295321.4	chr2	128253573:128253724:128255715:128255813:128260390:128260448,	128255716	128255813	128255781	128255781	Frame_Shift_Del	T	-	p.K500fs
LIHC	TCGA-DD-A3A0-01	MYO7B	ENST00000428314.1,ENST00000389524.4,ENST00000409816.2	chr2	128331494:128331637:128334169:128334283:128335707:128335861,	128334170	128334283	128334257	128334257	Frame_Shift_Del	C	-	p.P275fs
LIHC	TCGA-DD-A3A0-01	WDR33	ENST00000409658.3,ENST00000393006.1	chr2	128526506:128526575:128528351:128528578:128568585:128568721,	128528352	128528578	128528390	128528390	Frame_Shift_Del	T	-	p.T56fs
LIHC	TCGA-DD-A3A0-01	WDR33	ENST00000409658.3,ENST00000393006.1	chr2	128526506:128526575:128528351:128528578:128568585:128568721,	128528352	128528578	128528521	128528521	Frame_Shift_Del	A	-	p.F12fs
LIHC	TCGA-DD-A3A0-01	POLR2D	ENST00000409955.1	chr2	128608163:128608259:128610498:128610679:128615339:128615523,128605414:128605759:128610498:128610679:128615601:128615691,	128610499	128610679	128610526	128610526	Frame_Shift_Del	T	-	p.N76fs
LIHC	TCGA-DD-A3A0-01	SAP130	ENST00000259234.6,ENST00000450957.1	chr2	128775253:128775489:128783754:128783872:128785513:128785633,	128783755	128783872	128783832	128783832	Frame_Shift_Del	G	-	p.P38fs
LIHC	TCGA-DD-A3A0-01	UGGT1	ENST00000259253.6,ENST00000376723.3,ENST00000375990.3	chr2	128855002:128855138:128861505:128861588:128865511:128865628,	128861506	128861588	128861537	128861537	Frame_Shift_Del	T	-	p.F52fs
LIHC	TCGA-DD-A3A0-01	UGGT1	ENST00000259253.6,ENST00000376723.3,ENST00000375990.3	chr2	128855002:128855138:128861505:128861588:128865511:128865628,	128861506	128861588	128861545	128861545	Frame_Shift_Del	T	-	p.N54fs
LIHC	TCGA-DD-A3A0-01	POTEF	ENST00000361163.4,ENST00000409914.2,ENST00000360967.5,ENST00000357462.5	chr2	130843386:130843568:130843915:130843960:130845639:130845710,	130843916	130843960	130843944	130843944	Frame_Shift_Del	G	-	p.P523fs
LIHC	TCGA-DD-A3A0-01	POTEF	ENST00000361163.4,ENST00000409914.2,ENST00000360967.5,ENST00000357462.5	chr2	130843386:130843568:130843915:130843960:130845639:130845710,	130843916	130843960	130843946	130843946	Frame_Shift_Del	T	-	p.E522fs
LIHC	TCGA-DD-A3A0-01	SMPD4	ENST00000453750.1,ENST00000439886.1,ENST00000351288.6,ENST00000412570.1,ENST00000452225.2,ENST00000339679.7,ENST00000491128.1,ENST00000454468.1,ENST00000443958.2,ENST00000431183.2,ENST00000482171.1,ENST00000426662.2,ENST00000409031.1,ENST00000433118.1	chr2	130910318:130910457:130910615:130910744:130910891:130911023,	130910616	130910744	130910702	130910702	Frame_Shift_Del	C	-	p.D729fs
LIHC	TCGA-DD-A3A0-01	MZT2B	ENST00000409255.1	chr2	130940252:130940348:130941359:130941539:130948041:130948052,	130941360	130941539	130941490	130941490	Frame_Shift_Del	C	-	p.G150fs
LIHC	TCGA-DD-A3A0-01	ARHGEF4	ENST00000532720.1,ENST00000525839.1,ENST00000355771.3,ENST00000409303.1,ENST00000490728.1,ENST00000326016.5,ENST00000392953.3	chr2	131799387:131799517:131801024:131801156:131801871:131802115,	131801025	131801156	131801066	131801066	Frame_Shift_Del	G	-	p.S503fs
LIHC	TCGA-DD-A3A0-01	PLEKHB2	ENST00000409158.1	chr2	131888293:131888333:131890474:131890588:131897739:131897848,	131890475	131890588	131890575	131890575	Frame_Shift_Del	C	-	p.T145fs
LIHC	TCGA-DD-A3A0-01	TUBA3D	ENST00000321253.6	chr2	132236880:132237029:132237641:132238322:132240124:132240507,	132237642	132238322	132238205	132238205	Frame_Shift_Del	G	-	p.M313fs
LIHC	TCGA-DD-A3A0-01	NCKAP5	ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133430861:133430878:133483199:133483332:133486388:133486525,	133483200	133483332	133483202	133483202	Frame_Shift_Del	G	-	p.P1904fs
LIHC	TCGA-DD-A3A0-01	NCKAP5	ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133430861:133430878:133483199:133483332:133486388:133486525,	133483200	133483332	133483303	133483303	Frame_Shift_Del	A	-	p.S1870fs
LIHC	TCGA-DD-A3A0-01	TMEM163	ENST00000476823.1,ENST00000281924.6	chr2	135213334:135214347:135215602:135215744:135223684:135223796,	135215603	135215744	135215714	135215714	Frame_Shift_Del	C	-	p.G233fs
LIHC	TCGA-DD-A3A0-01	CCNT2	ENST00000295238.6,ENST00000452839.1,ENST00000537343.1,ENST00000419781.1,ENST00000417175.1,ENST00000475094.1,ENST00000264157.5	chr2	135677379:135677461:135694410:135694539:135696571:135696632,	135694411	135694539	135694507	135694507	Frame_Shift_Del	C	-	p.P113fs
LIHC	TCGA-DD-A3A0-01	ZRANB3	ENST00000412849.1,ENST00000403017.2,ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	135957923:135958010:135960401:135960533:135965003:135965088,	135960402	135960533	135960511	135960511	Frame_Shift_Del	G	-	p.P1009fs
LIHC	TCGA-DD-A3A0-01	ZRANB3	ENST00000452187.2,ENST00000403017.2,ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	136033205:136033325:136071058:136071175:136072928:136073100,	136071059	136071175	136071120	136071120	Frame_Shift_Del	C	-	p.G302fs
LIHC	TCGA-DD-A3A0-01	ZRANB3	ENST00000264159.6	chr2	136148371:136148390:136261898:136262066:136288095:136288146,136148371:136148390:136261898:136262066:136288696:136288769,	136261899	136262066	136261974	136261974	Frame_Shift_Del	A	-	p.L29fs
LIHC	TCGA-DD-A3A0-01	DARS	ENST00000264161.4,ENST00000537273.1,ENST00000422708.1	chr2	136672038:136672081:136673795:136673942:136678022:136678123,	136673796	136673942	136673883	136673883	Frame_Shift_Del	A	-	p.L340fs
LIHC	TCGA-DD-A3A0-01	DARS	ENST00000537273.1	chr2	136718965:136719068:136736843:136736936:136740966:136741017,136718965:136719068:136736843:136736936:136742972:136743062,	136736844	136736936	136736896	136736896	Frame_Shift_Del	T	-	p.K55fs
LIHC	TCGA-DD-A3A0-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	137872693:137872863:137917782:137917938:137928310:137928485,	137917783	137917938	137917909	137917909	Frame_Shift_Del	A	-	p.E499fs
LIHC	TCGA-DD-A3A0-01	LRP1B	ENST00000389484.3	chr2	141747100:141747226:141751563:141751704:141762903:141763026,	141751564	141751704	141751647	141751647	Frame_Shift_Del	T	-	p.N854fs
LIHC	TCGA-DD-A3A0-01	KYNU	ENST00000264170.4,ENST00000375773.2,ENST00000409512.1,ENST00000410015.2	chr2	143642923:143643105:143676177:143676298:143685227:143685310,	143676178	143676298	143676248	143676248	Frame_Shift_Del	A	-	p.P80fs
LIHC	TCGA-DD-A3A0-01	ARHGAP15	ENST00000295095.6	chr2	144244941:144245064:144276834:144276933:144313976:144314054,	144276835	144276933	144276861	144276861	Frame_Shift_Del	A	-	p.K285fs
LIHC	TCGA-DD-A3A0-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156870	145156870	Frame_Shift_Del	A	-	p.F628fs
LIHC	TCGA-DD-A3A0-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157069	145157069	Frame_Shift_Del	A	-	p.L562fs
LIHC	TCGA-DD-A3A0-01	ORC4	ENST00000535373.1,ENST00000536575.1,ENST00000264169.2,ENST00000392857.5,ENST00000542387.1,ENST00000540442.1,ENST00000392858.1	chr2	148692855:148693267:148695714:148695782:148695866:148695962,	148695715	148695782	148695730	148695730	Frame_Shift_Del	T	-	p.K369fs
LIHC	TCGA-DD-A3A0-01	ORC4	ENST00000535373.1,ENST00000536575.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000392858.1	chr2	148701004:148701091:148705619:148705793:148712915:148712964,148701004:148701091:148705619:148705793:148709941:148710082,	148705620	148705793	148705769	148705769	Frame_Shift_Del	T	-	p.R205fs
LIHC	TCGA-DD-A3A0-01	ORC4	ENST00000535373.1,ENST00000457954.1,ENST00000416719.1,ENST00000440042.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000496670.2,ENST00000490200.1,ENST00000392858.1	chr2	148715871:148715952:148716359:148716435:148778201:148778292,148715871:148715952:148716359:148716435:148730307:148730398,	148716360	148716435	148716383	148716383	Frame_Shift_Del	T	-	p.N93fs
LIHC	TCGA-DD-A3A0-01	ORC4	ENST00000535373.1,ENST00000495601.1,ENST00000457954.1,ENST00000416719.1,ENST00000440042.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000490200.1,ENST00000392858.1	chr2	148716359:148716435:148730307:148730398:148731016:148731093,	148730308	148730398	148730313	148730313	Frame_Shift_Del	T	-	p.T74fs
LIHC	TCGA-DD-A3A0-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247480	149247480	Frame_Shift_Del	A	-	p.K1195fs
LIHC	TCGA-DD-A3A0-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149248069	149248069	Frame_Shift_Del	G	-	p.W1390fs
LIHC	TCGA-DD-A3A0-01	NMI	ENST00000243346.5	chr2	152126978:152127389:152128139:152128246:152131997:152132184,	152128140	152128246	152128147	152128147	Frame_Shift_Del	T	-	p.K245fs
LIHC	TCGA-DD-A3A0-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152319553	152319553	Frame_Shift_Del	A	-	p.R1173fs
LIHC	TCGA-DD-A3A0-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320527	152320527	Frame_Shift_Del	A	-	p.E1498fs
LIHC	TCGA-DD-A3A0-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320541	152320541	Frame_Shift_Del	A	-	p.K1505fs
LIHC	TCGA-DD-A3A0-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320751	152320751	Frame_Shift_Del	A	-	p.K1573fs
LIHC	TCGA-DD-A3A0-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320767	152320767	Frame_Shift_Del	A	-	p.E1578fs
LIHC	TCGA-DD-A3A0-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321050	152321050	Frame_Shift_Del	A	-	p.S1672fs
LIHC	TCGA-DD-A3A0-01	NEB	ENST00000421461.2	chr2	152355811:152355904:152357904:152357997:152359306:152359399,152354773:152354866:152357904:152357997:152359306:152359399,	152357905	152357997	152357924	152357924	Frame_Shift_Del	T	-	p.N8001fs
LIHC	TCGA-DD-A3A0-01	CACNB4	ENST00000397327.2,ENST00000534999.1,ENST00000539935.1,ENST00000360283.6,ENST00000427385.1,ENST00000439467.1	chr2	152695627:152695893:152698416:152698602:152709961:152710057,	152698417	152698602	152698438	152698438	Frame_Shift_Del	G	-	p.P394fs
LIHC	TCGA-DD-A3A0-01	GALNT13	ENST00000392825.3,ENST00000409237.1,ENST00000487047.1	chr2	155252502:155252642:155265495:155265594:155295103:155295188,	155265496	155265594	155265558	155265558	Frame_Shift_Del	G	-	p.V453fs
LIHC	TCGA-DD-A3A0-01	GALNT13	ENST00000409237.1	chr2	155295165:155295238:155303109:155303277:155306922:155307206,	155303110	155303277	155303160	155303160	Frame_Shift_Del	G	-	p.V527fs
LIHC	TCGA-DD-A3A0-01	GALNT13	ENST00000453715.1	chr2	155295165:155295238:155303079:155303277:155306922:155307206,	155303080	155303277	155303160	155303160	Frame_Shift_Del	G	-	p.V527fs
LIHC	TCGA-DD-A3A0-01	GPD2	ENST00000540309.1,ENST00000409674.1,ENST00000438166.2,ENST00000415049.1,ENST00000310454.6,ENST00000409861.1	chr2	157332609:157332719:157352555:157352727:157367307:157367346,	157352556	157352727	157352679	157352679	Frame_Shift_Del	G	-	p.G78fs
LIHC	TCGA-DD-A3A0-01	GPD2	ENST00000540309.1,ENST00000492005.1,ENST00000409674.1,ENST00000438166.2,ENST00000310454.6,ENST00000464846.1,ENST00000409125.4,ENST00000409861.1	chr2	157435597:157435676:157436201:157436300:157439304:157439426,	157436202	157436300	157436265	157436265	Frame_Shift_Del	A	-	p.K675fs
LIHC	TCGA-DD-A3A0-01	PKP4	ENST00000389757.3,ENST00000481115.2,ENST00000389759.3,ENST00000457109.1,ENST00000421462.1,ENST00000462335.1,ENST00000426248.3	chr2	159389691:159389828:159459581:159459616:159477501:159477534,159433852:159433895:159459581:159459616:159477501:159477534,	159459582	159459616	159459598	159459598	Frame_Shift_Del	T	-	p.F88fs
LIHC	TCGA-DD-A3A0-01	PKP4	ENST00000421462.1,ENST00000426248.3	chr2	159477742:159477933:159481466:159481939:159488264:159488444,	159481467	159481939	159481694	159481694	Frame_Shift_Del	C	-	p.T303fs
LIHC	TCGA-DD-A3A0-01	PKP4	ENST00000481115.2	chr2	159477742:159477933:159481636:159481939:159488264:159488444,	159481637	159481939	159481694	159481694	Frame_Shift_Del	C	-	p.T303fs
LIHC	TCGA-DD-A3A0-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1	chr2	159477742:159477933:159481389:159481939:159488264:159488444,	159481390	159481939	159481694	159481694	Frame_Shift_Del	C	-	p.T303fs
LIHC	TCGA-DD-A3A0-01	PKP4	ENST00000421462.1,ENST00000426248.3	chr2	159477742:159477933:159481466:159481939:159488264:159488444,	159481467	159481939	159481722	159481722	Frame_Shift_Del	G	-	p.V312fs
LIHC	TCGA-DD-A3A0-01	PKP4	ENST00000481115.2	chr2	159477742:159477933:159481636:159481939:159488264:159488444,	159481637	159481939	159481722	159481722	Frame_Shift_Del	G	-	p.V312fs
LIHC	TCGA-DD-A3A0-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1	chr2	159477742:159477933:159481389:159481939:159488264:159488444,	159481390	159481939	159481722	159481722	Frame_Shift_Del	G	-	p.V312fs
LIHC	TCGA-DD-A3A0-01	DAPL1	ENST00000343761.4	chr2	159663594:159663627:159682907:159682999:159718920:159719293,	159682908	159682999	159682952	159682952	Frame_Shift_Del	T	-	p.P84fs
LIHC	TCGA-DD-A3A0-01	TANC1	ENST00000263635.6,ENST00000454300.1	chr2	160050767:160051004:160053118:160053304:160055485:160055564,	160053119	160053304	160053165	160053165	Frame_Shift_Del	C	-	p.A1009fs
LIHC	TCGA-DD-A3A0-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000548440.1,ENST00000355831.2,ENST00000392783.2	chr2	160181321:160181465:160182163:160182429:160189050:160189197,	160182164	160182429	160182380	160182380	Frame_Shift_Del	T	-	p.K1998fs
LIHC	TCGA-DD-A3A0-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160255339:160255405:160257109:160257175:160261359:160261421,	160257110	160257175	160257160	160257160	Frame_Shift_Del	T	-	p.I950fs
LIHC	TCGA-DD-A3A0-01	BAZ2B	ENST00000437839.1,ENST00000355831.2,ENST00000392783.2	chr2	160304752:160304914:160310123:160310312:160335085:160335232,160304826:160304920:160310123:160310312:160335085:160335232,	160310124	160310312	160310128	160310128	Frame_Shift_Del	A	-	p.F110fs
LIHC	TCGA-DD-A3A0-01	MARCH7	ENST00000259050.4,ENST00000409175.1	chr2	160585519:160585686:160599571:160599764:160604315:160604624,160585519:160585686:160599571:160599764:160602280:160602448,	160599572	160599764	160599685	160599685	Frame_Shift_Del	A	-	p.S89fs
LIHC	TCGA-DD-A3A0-01	PLA2R1	ENST00000283243.7,ENST00000392771.1	chr2	160806118:160806287:160807850:160808089:160811709:160811857,	160807851	160808089	160807894	160807894	Frame_Shift_Del	T	-	p.N1166fs
LIHC	TCGA-DD-A3A0-01	PLA2R1	ENST00000283243.7,ENST00000392771.1	chr2	160843666:160843869:160862162:160862332:160869773:160869886,	160862163	160862332	160862226	160862226	Frame_Shift_Del	A	-	p.W591fs
LIHC	TCGA-DD-A3A0-01	ITGB6	ENST00000409872.1,ENST00000283249.2,ENST00000409967.2	chr2	161051879:161052126:161052726:161052931:161056513:161056534,161051879:161052126:161052726:161052931:161055689:161055769,	161052727	161052931	161052783	161052783	Frame_Shift_Del	T	-	p.N97fs
LIHC	TCGA-DD-A3A0-01	RBMS1	ENST00000409075.1,ENST00000409972.1,ENST00000348849.3,ENST00000409289.2	chr2	161137824:161137875:161141285:161141379:161141505:161141555,	161141286	161141379	161141330	161141330	Frame_Shift_Del	T	-	p.T286fs
LIHC	TCGA-DD-A3A0-01	RBMS1	ENST00000409075.1,ENST00000409972.1,ENST00000348849.3,ENST00000409289.2	chr2	161137824:161137875:161141285:161141379:161141505:161141555,	161141286	161141379	161141375	161141375	Frame_Shift_Del	A	-	p.Y271fs
LIHC	TCGA-DD-A3A0-01	TANK	ENST00000392749.2,ENST00000259075.2	chr2	162081141:162081257:162087481:162088062:162091852:162091892,	162087482	162088062	162087805	162087805	Frame_Shift_Del	A	-	p.K282fs
LIHC	TCGA-DD-A3A0-01	PSMD14	ENST00000477232.1,ENST00000409682.3	chr2	162247614:162247689:162251588:162251714:162265347:162265410,	162251589	162251714	162251703	162251703	Frame_Shift_Del	A	-	p.N254fs
LIHC	TCGA-DD-A3A0-01	DPP4	ENST00000360534.3,ENST00000434918.2	chr2	162849792:162849894:162851470:162851544:162851809:162851882,	162851471	162851544	162851503	162851503	Frame_Shift_Del	G	-	p.L723fs
LIHC	TCGA-DD-A3A0-01	FAP	ENST00000480838.1,ENST00000188790.4,ENST00000443424.1	chr2	163072407:163072511:163074495:163074650:163075572:163075693,	163074496	163074650	163074601	163074601	Frame_Shift_Del	T	-	p.K219fs
LIHC	TCGA-DD-A3A0-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000469573.1,ENST00000263915.3,ENST00000446413.2	chr2	165378489:165378627:165381513:165381588:165383523:165383645,	165381514	165381588	165381559	165381559	Frame_Shift_Del	A	-	p.F211fs
LIHC	TCGA-DD-A3A0-01	COBLL1	ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165555914:165556009:165557031:165557266:165560953:165561028,	165557032	165557266	165557045	165557045	Frame_Shift_Del	T	-	p.S483fs
LIHC	TCGA-DD-A3A0-01	SLC38A11	ENST00000303735.4	chr2	165795959:165796066:165802102:165802237:165809216:165809291,	165802103	165802237	165802117	165802117	Frame_Shift_Del	A	-	p.L61fs
LIHC	TCGA-DD-A3A0-01	SLC38A11	ENST00000303735.4	chr2	165795959:165796066:165802102:165802237:165809216:165809291,	165802103	165802237	165802152	165802152	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-DD-A3A0-01	SLC38A11	ENST00000409058.1	chr2	165802102:165802237:165811140:165811255:165811718:165811756,	165811141	165811255	165811178	165811178	Frame_Shift_Del	A	-	p.F39fs
LIHC	TCGA-DD-A3A0-01	TTC21B	ENST00000243344.7	chr2	166771710:166771949:166773766:166773991:166775785:166775943,	166773767	166773991	166773940	166773940	Frame_Shift_Del	T	-	p.M576fs
LIHC	TCGA-DD-A3A0-01	TTC21B	ENST00000243344.7	chr2	166775785:166775943:166781058:166781188:166785644:166785845,	166781059	166781188	166781075	166781075	Frame_Shift_Del	T	-	p.K500fs
LIHC	TCGA-DD-A3A0-01	TTC21B	ENST00000243344.7	chr2	166775785:166775943:166781058:166781188:166785644:166785845,	166781059	166781188	166781174	166781174	Frame_Shift_Del	C	-	p.G467fs
LIHC	TCGA-DD-A3A0-01	SCN1A	ENST00000423058.2,ENST00000303395.4,ENST00000375405.3,ENST00000409050.1	chr2	166856232:166856286:166858981:166859263:166866228:166866351,	166858982	166859263	166859244	166859244	Frame_Shift_Del	A	-	p.L1341fs
LIHC	TCGA-DD-A3A0-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141111	167141111	Frame_Shift_Del	G	-	p.P611fs
LIHC	TCGA-DD-A3A0-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141111	167141111	Frame_Shift_Del	G	-	p.P611fs
LIHC	TCGA-DD-A3A0-01	SCN7A	ENST00000424326.1,ENST00000409855.1	chr2	167262022:167263156:167266174:167266445:167266729:167266834,	167266175	167266445	167266356	167266356	Frame_Shift_Del	G	-	p.A1267fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099815	168099815	Frame_Shift_Del	A	-	p.E638fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099958	168099958	Frame_Shift_Del	G	-	p.G687fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100107	168100107	Frame_Shift_Del	T	-	p.C735fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101225	168101225	Frame_Shift_Del	A	-	p.E1108fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101275	168101275	Frame_Shift_Del	A	-	p.K1125fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102792	168102792	Frame_Shift_Del	G	-	p.K1630fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103282	168103282	Frame_Shift_Del	A	-	p.K1794fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103964	168103964	Frame_Shift_Del	C	-	p.A2021fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104668	168104668	Frame_Shift_Del	A	-	p.K2256fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105292	168105292	Frame_Shift_Del	A	-	p.K2465fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106361	168106361	Frame_Shift_Del	A	-	p.E2820fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106749	168106749	Frame_Shift_Del	A	-	p.R2949fs
LIHC	TCGA-DD-A3A0-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107547	168107547	Frame_Shift_Del	C	-	p.I3215fs
LIHC	TCGA-DD-A3A0-01	STK39	ENST00000355999.4	chr2	169020248:169020390:169023808:169023917:169038487:169038600,	169023809	169023917	169023915	169023915	Frame_Shift_Del	T	-	p.K108fs
LIHC	TCGA-DD-A3A0-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699576	169699576	Frame_Shift_Del	G	-	p.A193fs
LIHC	TCGA-DD-A3A0-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699599	169699599	Frame_Shift_Del	G	-	p.W201fs
LIHC	TCGA-DD-A3A0-01	LRP2	ENST00000263816.3	chr2	170044479:170044775:170048341:170048543:170050270:170050402,	170048342	170048543	170048472	170048472	Frame_Shift_Del	G	-	p.Q2968fs
LIHC	TCGA-DD-A3A0-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170413696:170413807:170416896:170417295:170419734:170419860,	170416897	170417295	170417098	170417098	Frame_Shift_Del	A	-	p.L257fs
LIHC	TCGA-DD-A3A0-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170413696:170413807:170416896:170417295:170419734:170419860,	170416897	170417295	170417171	170417171	Frame_Shift_Del	T	-	p.S233fs
LIHC	TCGA-DD-A3A0-01	PPIG	ENST00000260970.3,ENST00000530152.1,ENST00000462903.1,ENST00000414307.1,ENST00000448752.2	chr2	170460696:170460771:170462548:170462656:170463613:170463658,	170462549	170462656	170462625	170462625	Frame_Shift_Del	T	-	p.D71fs
LIHC	TCGA-DD-A3A0-01	PPIG	ENST00000417938.2	chr2	170460696:170460771:170462612:170462656:170463613:170463658,	170462613	170462656	170462625	170462625	Frame_Shift_Del	T	-	p.D71fs
LIHC	TCGA-DD-A3A0-01	PPIG	ENST00000466142.1,ENST00000260970.3,ENST00000433207.1,ENST00000409714.3,ENST00000482772.1,ENST00000448752.2	chr2	170488284:170488443:170489669:170489757:170492601:170492738,	170489670	170489757	170489711	170489711	Frame_Shift_Del	T	-	p.L325fs
LIHC	TCGA-DD-A3A0-01	SSB	ENST00000260956.4,ENST00000409333.1	chr2	170666792:170666933:170667367:170667554:170667692:170667833,	170667368	170667554	170667387	170667387	Frame_Shift_Del	A	-	p.E277fs
LIHC	TCGA-DD-A3A0-01	MYO3B	ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171260756:171260910:171262054:171262143:171264224:171264354,	171262055	171262143	171262096	171262096	Frame_Shift_Del	C	-	p.P834fs
LIHC	TCGA-DD-A3A0-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171906573:171906684:171910270:171910363:171911592:171911682,	171910271	171910363	171910318	171910318	Frame_Shift_Del	T	-	p.I181fs
LIHC	TCGA-DD-A3A0-01	METTL8	ENST00000447486.1,ENST00000392604.2	chr2	172180752:172180872:172182350:172182416:172187068:172187126,	172182351	172182416	172182398	172182398	Frame_Shift_Del	T	-	p.N329fs
LIHC	TCGA-DD-A3A0-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195760	172195760	Frame_Shift_Del	T	-	p.K180fs
LIHC	TCGA-DD-A3A0-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195897	172195897	Frame_Shift_Del	T	-	p.T135fs
LIHC	TCGA-DD-A3A0-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172196023	172196023	Frame_Shift_Del	A	-	p.Y93fs
LIHC	TCGA-DD-A3A0-01	METTL8	ENST00000375258.4,ENST00000453846.1,ENST00000442778.1,ENST00000442541.1,ENST00000392599.2,ENST00000392604.2	chr2	172196050:172196064:172216931:172217023:172291183:172291290,172196050:172196064:172216931:172217023:172271112:172271236,172196050:172196064:172216931:172217023:172248552:172248707,	172216932	172217023	172216975	172216975	Frame_Shift_Del	T	-	p.K64fs
LIHC	TCGA-DD-A3A0-01	DCAF17	ENST00000339506.3,ENST00000468592.1,ENST00000375255.3	chr2	172325486:172325540:172330375:172330485:172333369:172333460,	172330376	172330485	172330378	172330378	Frame_Shift_Del	A	-	p.A328fs
LIHC	TCGA-DD-A3A0-01	DYNC1I2	ENST00000409773.1,ENST00000508530.1,ENST00000410079.3,ENST00000397119.3,ENST00000409453.1,ENST00000340296.4,ENST00000534253.2,ENST00000482454.1,ENST00000358002.6,ENST00000263811.4,ENST00000409317.1,ENST00000479806.1,ENST00000409197.1	chr2	172583300:172583426:172584330:172584477:172584814:172584928,	172584331	172584477	172584369	172584369	Frame_Shift_Del	A	-	p.P345fs
LIHC	TCGA-DD-A3A0-01	SLC25A12	ENST00000422440.2,ENST00000263812.4,ENST00000392592.4	chr2	172644298:172644457:172647960:172648099:172650136:172650277,	172647961	172648099	172647987	172647987	Frame_Shift_Del	T	-	p.N520fs
LIHC	TCGA-DD-A3A0-01	SLC25A12	ENST00000422440.2,ENST00000263812.4,ENST00000485880.1,ENST00000392592.4	chr2	172671630:172671712:172683307:172683392:172690472:172690566,	172683308	172683392	172683339	172683339	Frame_Shift_Del	A	-	p.L300fs
LIHC	TCGA-DD-A3A0-01	HAT1	ENST00000457761.2,ENST00000477327.1,ENST00000412731.1,ENST00000392584.1,ENST00000494601.1,ENST00000264108.4	chr2	172823363:172823470:172841095:172841247:172844159:172844276,	172841096	172841247	172841169	172841169	Frame_Shift_Del	T	-	p.C299fs
LIHC	TCGA-DD-A3A0-01	METAP1D	ENST00000315796.4	chr2	172928438:172928588:172930331:172930480:172930991:172931034,	172930332	172930480	172930427	172930427	Frame_Shift_Del	A	-	p.P148fs
LIHC	TCGA-DD-A3A0-01	PDK1	ENST00000543905.1,ENST00000439519.1,ENST00000282077.3,ENST00000410055.1,ENST00000443353.1	chr2	173423435:173423577:173426947:173427019:173429230:173429415,	173426948	173427019	173427013	173427013	Frame_Shift_Del	T	-	p.I135fs
LIHC	TCGA-DD-A3A0-01	PDK1	ENST00000543905.1,ENST00000439519.1,ENST00000282077.3,ENST00000410055.1,ENST00000443353.1	chr2	173427468:173427528:173429230:173429415:173429705:173429801,173426947:173427019:173429230:173429415:173429705:173429801,	173429231	173429415	173429382	173429382	Frame_Shift_Del	C	-	p.R188fs
LIHC	TCGA-DD-A3A0-01	CDCA7	ENST00000306721.3	chr2	174223442:174223565:174223982:174224219:174227953:174228190,	174223983	174224219	174224181	174224181	Frame_Shift_Del	T	-	p.F116fs
LIHC	TCGA-DD-A3A0-01	CDCA7	ENST00000410101.3	chr2	174223442:174223565:174224114:174224219:174227953:174228190,	174224115	174224219	174224181	174224181	Frame_Shift_Del	T	-	p.F116fs
LIHC	TCGA-DD-A3A0-01	CDCA7	ENST00000435616.1	chr2	174223442:174223565:174224070:174224219:174227953:174228190,	174224071	174224219	174224181	174224181	Frame_Shift_Del	T	-	p.F116fs
LIHC	TCGA-DD-A3A0-01	SCRN3	ENST00000490927.1	chr2	175260472:175260545:175264649:175264831:175265717:175265782,	175264650	175264831	175264720	175264720	Frame_Shift_Del	G	-	p.W77fs
LIHC	TCGA-DD-A3A0-01	SCRN3	ENST00000490927.1	chr2	175260472:175260545:175264649:175264831:175265717:175265782,	175264650	175264831	175264777	175264777	Frame_Shift_Del	G	-	p.W96fs
LIHC	TCGA-DD-A3A0-01	SCRN3	ENST00000272732.6,ENST00000458563.1,ENST00000548031.1,ENST00000409673.3,ENST00000490927.1	chr2	175264649:175264831:175265717:175265917:175268830:175268918,	175265718	175265917	175265780	175265780	Frame_Shift_Del	A	-	p.E135fs
LIHC	TCGA-DD-A3A0-01	SCRN3	ENST00000272732.6,ENST00000409673.3,ENST00000490927.1	chr2	175265717:175265917:175268830:175269043:175287612:175287775,	175268831	175269043	175268889	175268889	Frame_Shift_Del	C	-	p.H200fs
LIHC	TCGA-DD-A3A0-01	GPR155	ENST00000295500.4,ENST00000392552.2,ENST00000392551.2	chr2	175311338:175311475:175318464:175318569:175324605:175324816,	175318465	175318569	175318527	175318527	Frame_Shift_Del	G	-	p.P605fs
LIHC	TCGA-DD-A3A0-01	WIPF1	ENST00000392546.2,ENST00000359761.3,ENST00000392547.2,ENST00000409891.1,ENST00000272746.5	chr2	175431804:175431911:175432588:175432801:175436403:175437174,	175432589	175432801	175432679	175432679	Frame_Shift_Del	G	-	p.L418fs
LIHC	TCGA-DD-A3A0-01	WIPF1	ENST00000392546.2,ENST00000359761.3,ENST00000392547.2,ENST00000409891.1,ENST00000272746.5	chr2	175431804:175431911:175432588:175432801:175436403:175437174,	175432589	175432801	175432748	175432748	Frame_Shift_Del	G	-	p.L395fs
LIHC	TCGA-DD-A3A0-01	ATF2	ENST00000409437.1	chr2	175962171:175962321:175976295:175976382:175978721:175978836,175962171:175962321:175976295:175976382:175979417:175979596,175962171:175962321:175976295:175976382:175982717:175982846,	175976296	175976382	175976298	175976298	Frame_Shift_Del	T	-	p.M276fs
LIHC	TCGA-DD-A3A0-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177034063	177034063	Frame_Shift_Del	C	-	p.A74fs
LIHC	TCGA-DD-A3A0-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177034143	177034143	Frame_Shift_Del	G	-	p.G104fs
LIHC	TCGA-DD-A3A0-01	MTX2	ENST00000249442.6,ENST00000392529.2,ENST00000443241.1,ENST00000420864.1	chr2	177193601:177193640:177194028:177194154:177195311:177195388,	177194029	177194154	177194090	177194090	Frame_Shift_Del	A	-	p.Q150fs
LIHC	TCGA-DD-A3A0-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3,ENST00000474793.1	chr2	179301000:179301046:179306336:179306431:179307993:179308111,	179306337	179306431	179306402	179306402	Frame_Shift_Del	T	-	p.R182fs
LIHC	TCGA-DD-A3A0-01	FKBP7	ENST00000424785.2	chr2	179330496:179330658:179334378:179334512:179337755:179337869,179330496:179330658:179334378:179334512:179343005:179343044,179330496:179330658:179334378:179334512:179341788:179341940,	179334379	179334512	179334424	179334424	Frame_Shift_Del	A	-	p.F154fs
LIHC	TCGA-DD-A3A0-01	FKBP7	ENST00000434643.2	chr2	179330496:179330658:179334378:179334509:179341788:179341940,	179334379	179334509	179334424	179334424	Frame_Shift_Del	A	-	p.F154fs
LIHC	TCGA-DD-A3A0-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179603904	179603904	Frame_Shift_Del	T	-	p.T4686fs
LIHC	TCGA-DD-A3A0-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605199	179605199	Frame_Shift_Del	T	-	p.K4254fs
LIHC	TCGA-DD-A3A0-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606516	179606516	Frame_Shift_Del	T	-	p.K3815fs
LIHC	TCGA-DD-A3A0-01	ITGA4	ENST00000397033.2,ENST00000465522.1,ENST00000233573.6	chr2	182343483:182343551:182344863:182344993:182346324:182346410,	182344864	182344993	182344913	182344913	Frame_Shift_Del	T	-	p.L225fs
LIHC	TCGA-DD-A3A0-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000418559.1	chr2	183623886:183624034:183627408:183627528:183640042:183640147,	183627409	183627528	183627502	183627502	Frame_Shift_Del	A	-	p.K747fs
LIHC	TCGA-DD-A3A0-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183800020:183800103:183806797:183806891:183817132:183817230,	183806798	183806891	183806841	183806841	Frame_Shift_Del	A	-	p.F890fs
LIHC	TCGA-DD-A3A0-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183850898:183850955:183853757:183853914:183859566:183859615,	183853758	183853914	183853803	183853803	Frame_Shift_Del	A	-	p.F307fs
LIHC	TCGA-DD-A3A0-01	DUSP19	ENST00000354221.4	chr2	183943716:183943887:183948235:183948282:183951767:183951920,	183948236	183948282	183948271	183948271	Frame_Shift_Del	A	-	p.K89fs
LIHC	TCGA-DD-A3A0-01	NUP35	ENST00000409798.1,ENST00000479162.1,ENST00000374930.3,ENST00000295119.4,ENST00000446612.1	chr2	183993014:183993185:183995145:183995273:183998293:183998351,	183995146	183995273	183995187	183995187	Frame_Shift_Del	A	-	p.K85fs
LIHC	TCGA-DD-A3A0-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673793	186673793	Frame_Shift_Del	A	-	p.E6676fs
LIHC	TCGA-DD-A3A0-01	ZSWIM2	ENST00000295131.2	chr2	187703685:187703896:187709443:187709484:187712445:187712522,	187709444	187709484	187709469	187709469	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-DD-A3A0-01	GULP1	ENST00000476422.1,ENST00000409843.1,ENST00000409580.1,ENST00000409609.1,ENST00000359135.3,ENST00000409830.1,ENST00000495745.1	chr2	189393898:189393922:189405907:189406045:189433965:189434082,	189405908	189406045	189406038	189406038	Frame_Shift_Del	A	-	p.E131fs
LIHC	TCGA-DD-A3A0-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189860850:189860904:189861123:189861222:189861890:189861943,	189861124	189861222	189861172	189861172	Frame_Shift_Del	C	-	p.P571fs
LIHC	TCGA-DD-A3A0-01	COL5A2	ENST00000374866.3	chr2	189918884:189918938:189921698:189921752:189922045:189922153,	189921699	189921752	189921735	189921735	Frame_Shift_Del	T	-	p.K785fs
LIHC	TCGA-DD-A3A0-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2,ENST00000433782.2	chr2	190561026:190561095:190569748:190569950:190571663:190571868,	190569749	190569950	190569865	190569865	Frame_Shift_Del	T	-	p.F609fs
LIHC	TCGA-DD-A3A0-01	PMS1	ENST00000441310.2,ENST00000421722.1,ENST00000409985.1,ENST00000450931.1,ENST00000424766.1,ENST00000374826.4,ENST00000409823.3,ENST00000447232.2,ENST00000424059.1	chr2	190656535:190656667:190660494:190660677:190670377:190670480,	190660495	190660677	190660513	190660513	Frame_Shift_Del	A	-	p.K51fs
LIHC	TCGA-DD-A3A0-01	PMS1	ENST00000424307.1,ENST00000441310.2,ENST00000447232.2	chr2	190670377:190670480:190682742:190682906:190708689:190708806,	190682743	190682906	190682810	190682810	Frame_Shift_Del	A	-	p.A162fs
LIHC	TCGA-DD-A3A0-01	HIBCH	ENST00000392332.3,ENST00000409934.1,ENST00000359678.5	chr2	191116964:191117033:191125881:191125960:191152311:191152364,	191125882	191125960	191125914	191125914	Frame_Shift_Del	T	-	p.K162fs
LIHC	TCGA-DD-A3A0-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191524267	191524267	Frame_Shift_Del	A	-	p.E122fs
LIHC	TCGA-DD-A3A0-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191524535	191524535	Frame_Shift_Del	A	-	p.P211fs
LIHC	TCGA-DD-A3A0-01	GLS	ENST00000409428.1,ENST00000409215.1	chr2	191792418:191792456:191795162:191795294:191796270:191796363,	191795163	191795294	191795213	191795213	Frame_Shift_Del	C	-	p.V492fs
LIHC	TCGA-DD-A3A0-01	MYO1B	ENST00000339514.4,ENST00000392318.3	chr2	192110114:192110352:192141612:192141756:192160836:192160952,	192141613	192141756	192141628	192141628	Frame_Shift_Del	A	-	p.K3fs
LIHC	TCGA-DD-A3A0-01	MYO1B	ENST00000339514.4,ENST00000304164.4,ENST00000439065.2,ENST00000392318.3,ENST00000392316.1	chr2	192257798:192257948:192261154:192261223:192265107:192265194,	192261155	192261223	192261178	192261178	Frame_Shift_Del	A	-	p.T750fs
LIHC	TCGA-DD-A3A0-01	SLC39A10	ENST00000465851.1,ENST00000444421.1,ENST00000409086.3,ENST00000541054.1,ENST00000430412.1,ENST00000359634.5	chr2	196545616:196545774:196548422:196548630:196571339:196571400,	196548423	196548630	196548492	196548492	Frame_Shift_Del	T	-	p.F360fs
LIHC	TCGA-DD-A3A0-01	SLC39A10	ENST00000465851.1,ENST00000409086.3,ENST00000541054.1,ENST00000430412.1,ENST00000359634.5	chr2	196548422:196548630:196571339:196571509:196573379:196573568,	196571340	196571509	196571358	196571358	Frame_Shift_Del	T	-	p.I412fs
LIHC	TCGA-DD-A3A0-01	DNAH7	ENST00000312428.6	chr2	196791149:196791290:196799314:196799513:196801322:196801516,	196799315	196799513	196799425	196799426	Frame_Shift_Del	CG	-	p.SE1120fs
LIHC	TCGA-DD-A3A0-01	DNAH7	ENST00000312428.6	chr2	196851789:196851917:196852680:196852953:196865427:196865607,	196852681	196852953	196852808	196852808	Frame_Shift_Del	A	-	p.L500fs
LIHC	TCGA-DD-A3A0-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197090495:197090594:197092825:197092978:197105172:197105286,	197092826	197092978	197092963	197092963	Frame_Shift_Del	C	-	p.G1260fs
LIHC	TCGA-DD-A3A0-01	CCDC150	ENST00000389175.4,ENST00000471546.1	chr2	197504438:197504502:197511064:197511228:197521356:197521577,	197511065	197511228	197511184	197511184	Frame_Shift_Del	T	-	p.S45fs
LIHC	TCGA-DD-A3A0-01	GTF3C3	ENST00000263956.3	chr2	197629302:197629409:197631288:197631441:197634638:197634758,	197631289	197631441	197631352	197631352	Frame_Shift_Del	C	-	p.G825fs
LIHC	TCGA-DD-A3A0-01	PGAP1	ENST00000470179.1,ENST00000354764.4,ENST00000423035.1	chr2	197709247:197709298:197710605:197710741:197711726:197711924,	197710606	197710741	197710688	197710688	Frame_Shift_Del	A	-	p.L735fs
LIHC	TCGA-DD-A3A0-01	ANKRD44	ENST00000424317.1,ENST00000282272.8,ENST00000448801.1,ENST00000450567.1,ENST00000337207.5,ENST00000328737.2	chr2	197863060:197863143:197863630:197863776:197865142:197865226,	197863631	197863776	197863769	197863769	Frame_Shift_Del	G	-	p.L818fs
LIHC	TCGA-DD-A3A0-01	SF3B1	ENST00000335508.6,ENST00000424674.1	chr2	198260779:198261052:198262708:198262840:198263184:198263305,	198262709	198262840	198262763	198262763	Frame_Shift_Del	T	-	p.K1071fs
LIHC	TCGA-DD-A3A0-01	SF3B1	ENST00000335508.6,ENST00000470268.1	chr2	198274506:198274731:198281464:198281635:198283232:198283312,	198281465	198281635	198281606	198281606	Frame_Shift_Del	T	-	p.K175fs
LIHC	TCGA-DD-A3A0-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000263960.2	chr2	198318216:198318388:198327262:198327455:198334793:198334895,198324655:198324805:198327262:198327455:198334793:198334895,	198327263	198327455	198327314	198327314	Frame_Shift_Del	G	-	p.K102fs
LIHC	TCGA-DD-A3A0-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000263960.2	chr2	198318216:198318388:198327262:198327455:198334793:198334895,198324655:198324805:198327262:198327455:198334793:198334895,	198327263	198327455	198327333	198327333	Frame_Shift_Del	A	-	p.K110fs
LIHC	TCGA-DD-A3A0-01	HSPD1	ENST00000486181.1,ENST00000388968.3,ENST00000452200.1,ENST00000345042.2,ENST00000430176.1,ENST00000440114.1	chr2	198359386:198359476:198360017:198360100:198361863:198362116,	198360018	198360100	198360058	198360058	Frame_Shift_Del	T	-	p.K157fs
LIHC	TCGA-DD-A3A0-01	PLCL1	ENST00000487695.2,ENST00000435320.1,ENST00000437704.2,ENST00000428675.1	chr2	198966008:198966084:198968550:198968660:199011503:199011658,	198968551	198968660	198968582	198968582	Frame_Shift_Del	G	-	p.L1009fs
LIHC	TCGA-DD-A3A0-01	PLCL1	ENST00000487695.2,ENST00000435320.1,ENST00000437704.2,ENST00000428675.1	chr2	198966008:198966084:198968550:198968660:199011503:199011658,	198968551	198968660	198968609	198968609	Frame_Shift_Del	A	-	p.R1018fs
LIHC	TCGA-DD-A3A0-01	SPATS2L	ENST00000453663.1,ENST00000449647.1,ENST00000438761.1,ENST00000409397.2,ENST00000360760.5	chr2	201281101:201281151:201283972:201284219:201305371:201305447,	201283973	201284219	201284054	201284054	Frame_Shift_Del	G	-	p.G94fs
LIHC	TCGA-DD-A3A0-01	KCTD18	ENST00000478816.1,ENST00000359878.3,ENST00000409157.1	chr2	201363724:201363807:201369470:201369682:201371579:201371814,	201369471	201369682	201369496	201369496	Frame_Shift_Del	A	-	p.L116fs
LIHC	TCGA-DD-A3A0-01	KCTD18	ENST00000468413.1,ENST00000447556.1	chr2	201363724:201363807:201369492:201369682:201371579:201371814,	201369493	201369682	201369496	201369496	Frame_Shift_Del	A	-	p.L116fs
LIHC	TCGA-DD-A3A0-01	KCTD18	ENST00000478816.1,ENST00000447556.1,ENST00000409157.1	chr2	201369492:201369682:201371579:201371814:201374733:201374791,	201371580	201371814	201371592	201371592	Frame_Shift_Del	T	-	p.T50fs
LIHC	TCGA-DD-A3A0-01	AOX1	ENST00000465297.1,ENST00000374700.2	chr2	201480693:201480786:201485372:201485542:201485842:201485969,	201485373	201485542	201485450	201485450	Frame_Shift_Del	G	-	p.T594fs
LIHC	TCGA-DD-A3A0-01	ORC2	ENST00000234296.2	chr2	201791490:201791623:201796061:201796171:201798598:201798697,	201796062	201796171	201796091	201796091	Frame_Shift_Del	T	-	p.K296fs
LIHC	TCGA-DD-A3A0-01	CFLAR	ENST00000309955.3,ENST00000341582.6,ENST00000423241.2,ENST00000474842.1,ENST00000443227.1	chr2	202014476:202014558:202025154:202025665:202027718:202027803,202014476:202014558:202025154:202025665:202028557:202028696,	202025155	202025665	202025354	202025354	Frame_Shift_Del	C	-	p.L331fs
LIHC	TCGA-DD-A3A0-01	TRAK2	ENST00000430254.1	chr2	202272125:202272320:202285139:202285429:202316072:202316176,	202285140	202285429	202285204	202285204	Frame_Shift_Del	A	-	p.F9fs
LIHC	TCGA-DD-A3A0-01	STRADB	ENST00000194530.3,ENST00000392249.2	chr2	202319468:202319575:202323506:202323587:202337677:202337799,202319468:202319575:202323506:202323587:202334675:202334775,	202323507	202323587	202323553	202323553	Frame_Shift_Del	A	-	p.E20fs
LIHC	TCGA-DD-A3A0-01	ALS2	ENST00000439495.1,ENST00000482891.1,ENST00000264276.6,ENST00000457679.2	chr2	202591934:202592001:202592427:202592498:202593234:202593363,	202592428	202592498	202592479	202592479	Frame_Shift_Del	A	-	p.F954fs
LIHC	TCGA-DD-A3A0-01	SUMO1	ENST00000409205.1	chr2	203079079:203079157:203084754:203084829:203103162:203103185,203079079:203079152:203084754:203084829:203103162:203103185,	203084755	203084829	203084799	203084799	Frame_Shift_Del	C	-	p.D15fs
LIHC	TCGA-DD-A3A0-01	NOP58	ENST00000472050.1,ENST00000488403.1,ENST00000426814.1	chr2	203130501:203130709:203139835:203139912:203142672:203142725,	203139836	203139912	203139908	203139908	Frame_Shift_Del	A	-	p.K40fs
LIHC	TCGA-DD-A3A0-01	NOP58	ENST00000264279.5	chr2	203162567:203162629:203164956:203165090:203167643:203167780,	203164957	203165090	203165060	203165060	Frame_Shift_Del	A	-	p.K458fs
LIHC	TCGA-DD-A3A0-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383696	203383696	Frame_Shift_Del	C	-	p.A258fs
LIHC	TCGA-DD-A3A0-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420584	203420584	Frame_Shift_Del	T	-	p.C732fs
LIHC	TCGA-DD-A3A0-01	NBEAL1	ENST00000449802.1	chr2	203991546:203991649:203992503:203992660:203995040:203995199,	203992504	203992660	203992617	203992617	Frame_Shift_Del	A	-	p.Q1092fs
LIHC	TCGA-DD-A3A0-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204058517:204058634:204062024:204062114:204064060:204064170,	204062025	204062114	204062067	204062067	Frame_Shift_Del	A	-	p.K2332fs
LIHC	TCGA-DD-A3A0-01	CYP20A1	ENST00000428265.1,ENST00000449301.1,ENST00000463131.1	chr2	204131236:204131404:204143295:204143411:204144781:204144836,	204143296	204143411	204143333	204143333	Frame_Shift_Del	A	-	p.I239fs
LIHC	TCGA-DD-A3A0-01	PARD3B	ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205990332:205990461:206023445:206023631:206036934:206037105,	206023446	206023631	206023508	206023508	Frame_Shift_Del	C	-	p.I499fs
LIHC	TCGA-DD-A3A0-01	PARD3B	ENST00000358768.2,ENST00000462231.1,ENST00000406610.2,ENST00000349953.3	chr2	206110501:206110546:206165253:206165460:206166187:206166235,	206165254	206165460	206165288	206165288	Frame_Shift_Del	T	-	p.G740fs
LIHC	TCGA-DD-A3A0-01	ADAM23	ENST00000374415.3,ENST00000264377.3,ENST00000374416.1	chr2	207345955:207346032:207395608:207395672:207406775:207406858,	207395609	207395672	207395627	207395627	Frame_Shift_Del	T	-	p.D176fs
LIHC	TCGA-DD-A3A0-01	FASTKD2	ENST00000236980.6,ENST00000402774.3,ENST00000403094.3,ENST00000487777.1	chr2	207638948:207639121:207651456:207651623:207652660:207652879,	207651457	207651623	207651591	207651591	Frame_Shift_Del	A	-	p.Q521fs
LIHC	TCGA-DD-A3A0-01	KLF7	ENST00000423015.1	chr2	207953181:207953305:207988699:207989128:208030190:208030295,	207988700	207989128	207988806	207988806	Frame_Shift_Del	G	-	p.P142fs
LIHC	TCGA-DD-A3A0-01	CREB1	ENST00000445803.1	chr2	208394827:208394858:208420351:208420473:208424949:208425072,208394646:208394742:208420351:208420473:208424949:208425072,	208420352	208420473	208420421	208420421	Frame_Shift_Del	A	-	p.E21fs
LIHC	TCGA-DD-A3A0-01	CREB1	ENST00000421139.1	chr2	208394827:208394858:208424949:208425096:208432186:208432280,	208424950	208425096	208425086	208425086	Frame_Shift_Del	A	-	p.Q84fs
LIHC	TCGA-DD-A3A0-01	CCNYL1	ENST00000295414.3,ENST00000392209.3,ENST00000452312.1	chr2	208591565:208591600:208598670:208598771:208602134:208602170,	208598671	208598771	208598680	208598680	Frame_Shift_Del	G	-	p.G114fs
LIHC	TCGA-DD-A3A0-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208841635	208841635	Frame_Shift_Del	A	-	p.F429fs
LIHC	TCGA-DD-A3A0-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208842022	208842022	Frame_Shift_Del	C	-	p.G300fs
LIHC	TCGA-DD-A3A0-01	C2orf80	ENST00000428015.1	chr2	209035729:209035787:209036711:209036799:209045468:209045540,209030201:209030539:209036711:209036799:209045468:209045540,	209036712	209036799	209036761	209036761	Frame_Shift_Del	G	-	p.P135fs
LIHC	TCGA-DD-A3A0-01	PTH2R	ENST00000413482.1,ENST00000272847.2	chr2	209324619:209324686:209345794:209345889:209353736:209353875,	209345795	209345889	209345840	209345840	Frame_Shift_Del	A	-	p.K343fs
LIHC	TCGA-DD-A3A0-01	PTH2R	ENST00000413482.1,ENST00000272847.2	chr2	209345794:209345889:209353736:209353875:209355363:209355405,	209353737	209353875	209353870	209353870	Frame_Shift_Del	T	-	p.F404fs
LIHC	TCGA-DD-A3A0-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210558174	210558174	Frame_Shift_Del	C	-	p.T427fs
LIHC	TCGA-DD-A3A0-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210558174	210558174	Frame_Shift_Del	C	-	p.T427fs
LIHC	TCGA-DD-A3A0-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559813	210559813	Frame_Shift_Del	A	-	p.S973fs
LIHC	TCGA-DD-A3A0-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559813	210559813	Frame_Shift_Del	A	-	p.S973fs
LIHC	TCGA-DD-A3A0-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210560952	210560952	Frame_Shift_Del	C	-	p.S1353fs
LIHC	TCGA-DD-A3A0-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210560952	210560952	Frame_Shift_Del	C	-	p.S1353fs
LIHC	TCGA-DD-A3A0-01	UNC80	ENST00000439458.1,ENST00000489023.1,ENST00000272845.6	chr2	210810570:210810667:210818823:210818994:210822367:210822460,	210818824	210818994	210818955	210818955	Frame_Shift_Del	C	-	p.S2407fs
LIHC	TCGA-DD-A3A0-01	KANSL1L	ENST00000418791.1	chr2	210893568:210893693:210894526:210894642:210896144:210896270,210893568:210893693:210894526:210894642:210905143:210905251,	210894527	210894642	210894611	210894611	Frame_Shift_Del	A	-	p.F729fs
LIHC	TCGA-DD-A3A0-01	KANSL1L	ENST00000281772.9	chr2	210896144:210896270:210905143:210905251:210908662:210908828,	210905144	210905251	210905212	210905212	Frame_Shift_Del	T	-	p.K654fs
LIHC	TCGA-DD-A3A0-01	KANSL1L	ENST00000428655.1,ENST00000452086.1,ENST00000418791.1,ENST00000281772.9,ENST00000457374.1	chr2	210940275:210940480:210962809:210962931:210968827:210968919,	210962810	210962931	210962836	210962836	Frame_Shift_Del	T	-	p.K508fs
LIHC	TCGA-DD-A3A0-01	VWC2L	ENST00000312504.5	chr2	215278837:215279307:215301352:215301482:215440395:215443683,	215301353	215301482	215301476	215301476	Frame_Shift_Del	A	-	p.K172fs
LIHC	TCGA-DD-A3A0-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645975	215645975	Frame_Shift_Del	T	-	p.K209fs
LIHC	TCGA-DD-A3A0-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000323926.6,ENST00000336916.4	chr2	216236631:216236738:216236831:216237098:216238044:216238133,	216236832	216237098	216237041	216237041	Frame_Shift_Del	A	-	p.L2102fs
LIHC	TCGA-DD-A3A0-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000346544.3,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000480737.1,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216246934:216247048:216248050:216248206:216248742:216248803,	216248051	216248206	216248063	216248063	Frame_Shift_Del	T	-	p.T1680fs
LIHC	TCGA-DD-A3A0-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000346544.3,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000480737.1,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216246934:216247048:216248050:216248206:216248742:216248803,	216248051	216248206	216248069	216248069	Frame_Shift_Del	T	-	p.T1678fs
LIHC	TCGA-DD-A3A0-01	FN1	ENST00000432072.2,ENST00000323926.6,ENST00000354785.4	chr2	216256354:216256537:216257653:216257926:216259250:216259442,	216257654	216257926	216257857	216257857	Frame_Shift_Del	G	-	p.P1289fs
LIHC	TCGA-DD-A3A0-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216272830:216272920:216273020:216273149:216274285:216274462,	216273021	216273149	216273047	216273047	Frame_Shift_Del	A	-	p.L801fs
LIHC	TCGA-DD-A3A0-01	XRCC5	ENST00000460284.1,ENST00000392133.3,ENST00000392132.2	chr2	217054947:217055057:217057361:217057458:217059641:217059709,	217057362	217057458	217057430	217057430	Frame_Shift_Del	A	-	p.L671fs
LIHC	TCGA-DD-A3A0-01	TNS1	ENST00000419504.1	chr2	218677090:218677168:218677937:218678027:218678407:218678539,	218677938	218678027	218677943	218677943	Frame_Shift_Del	T	-	p.N1546fs
LIHC	TCGA-DD-A3A0-01	TNS1	ENST00000430930.1,ENST00000490566.1,ENST00000446688.1,ENST00000171887.4	chr2	218677090:218677168:218677937:218678030:218678407:218678539,	218677938	218678030	218677943	218677943	Frame_Shift_Del	T	-	p.N1546fs
LIHC	TCGA-DD-A3A0-01	TNS1	ENST00000430930.1,ENST00000446688.1	chr2	218686462:218686661:218696177:218696270:218699813:218699889,	218696178	218696270	218696207	218696207	Frame_Shift_Del	G	-	p.P990fs
LIHC	TCGA-DD-A3A0-01	ARPC2	ENST00000478612.1	chr2	219099074:219099120:219103386:219103573:219104113:219104207,219093525:219093573:219103386:219103573:219104113:219104207,	219103387	219103573	219103400	219103400	Frame_Shift_Del	T	-	p.S94fs
LIHC	TCGA-DD-A3A0-01	ARPC2	ENST00000478612.1,ENST00000477992.1,ENST00000295685.10,ENST00000315717.5,ENST00000470146.1	chr2	219103441:219103573:219104113:219104207:219110142:219110180,	219104114	219104207	219104127	219104127	Frame_Shift_Del	A	-	p.K158fs
LIHC	TCGA-DD-A3A0-01	TMBIM1	ENST00000466012.1,ENST00000445635.1	chr2	219144060:219144076:219144748:219144849:219146662:219146904,219144060:219144076:219144748:219144849:219157188:219157226,	219144749	219144849	219144801	219144801	Frame_Shift_Del	A	-	p.F84fs
LIHC	TCGA-DD-A3A0-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219350386:219350466:219353026:219353144:219360482:219360673,	219353027	219353144	219353126	219353126	Frame_Shift_Del	G	-	p.P497fs
LIHC	TCGA-DD-A3A0-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1,ENST00000338465.5	chr2	219394678:219394763:219399331:219399429:219410943:219411021,	219399332	219399429	219399361	219399361	Frame_Shift_Del	A	-	p.L250fs
LIHC	TCGA-DD-A3A0-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1,ENST00000338465.5	chr2	219394678:219394763:219399331:219399429:219410943:219411021,	219399332	219399429	219399373	219399373	Frame_Shift_Del	T	-	p.K246fs
LIHC	TCGA-DD-A3A0-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1,ENST00000338465.5	chr2	219394678:219394763:219399331:219399429:219410943:219411021,	219399332	219399429	219399405	219399405	Frame_Shift_Del	G	-	p.P235fs
LIHC	TCGA-DD-A3A0-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1,ENST00000338465.5	chr2	219411641:219411814:219414531:219414632:219418275:219418447,	219414532	219414632	219414587	219414587	Frame_Shift_Del	C	-	p.G125fs
LIHC	TCGA-DD-A3A0-01	PLCD4	ENST00000459791.1,ENST00000417849.1,ENST00000432688.1,ENST00000450993.2,ENST00000473443.1	chr2	219494241:219494386:219495372:219495525:219496858:219497035,	219495373	219495525	219495493	219495493	Frame_Shift_Del	G	-	p.G414fs
LIHC	TCGA-DD-A3A0-01	CYP27A1	ENST00000258415.4	chr2	219646896:219647160:219674299:219674490:219676944:219677038,	219674300	219674490	219674477	219674477	Frame_Shift_Del	G	-	p.G145fs
LIHC	TCGA-DD-A3A0-01	WNT10A	ENST00000258411.3	chr2	219746965:219747145:219754705:219755085:219757495:219757868,	219754706	219755085	219754905	219754905	Frame_Shift_Del	C	-	p.V192fs
LIHC	TCGA-DD-A3A0-01	SLC23A3	ENST00000498327.1,ENST00000396775.3	chr2	220032935:220033040:220033750:220033824:220034030:220034128,	220033751	220033824	220033804	220033804	Frame_Shift_Del	A	-	p.C155fs
LIHC	TCGA-DD-A3A0-01	GLB1L	ENST00000295759.7,ENST00000392089.2,ENST00000356283.3,ENST00000497855.1,ENST00000409640.1	chr2	220102233:220102449:220102547:220102679:220102971:220103085,	220102548	220102679	220102584	220102584	Frame_Shift_Del	C	-	p.G479fs
LIHC	TCGA-DD-A3A0-01	GLB1L	ENST00000295759.7,ENST00000392089.2,ENST00000356283.3,ENST00000497855.1,ENST00000409640.1	chr2	220102233:220102449:220102547:220102679:220102971:220103085,	220102548	220102679	220102633	220102633	Frame_Shift_Del	A	-	p.L463fs
LIHC	TCGA-DD-A3A0-01	GLB1L	ENST00000356283.3,ENST00000447002.1,ENST00000409640.1	chr2	220104282:220104404:220104496:220104555:220104912:220104956,220104282:220104404:220104496:220104555:220107235:220107296,	220104497	220104555	220104508	220104508	Frame_Shift_Del	G	-	p.H257fs
LIHC	TCGA-DD-A3A0-01	PTPRN	ENST00000295718.2,ENST00000462351.1,ENST00000423636.2	chr2	220164026:220164106:220164421:220164508:220164706:220164981,	220164422	220164508	220164504	220164504	Frame_Shift_Del	G	-	p.L481fs
LIHC	TCGA-DD-A3A0-01	DNPEP	ENST00000373966.1,ENST00000273075.4,ENST00000373972.1,ENST00000429013.1,ENST00000523282.1,ENST00000373963.1	chr2	220249087:220249165:220250145:220250253:220250352:220250408,	220250146	220250253	220250211	220250211	Frame_Shift_Del	G	-	p.H237fs
LIHC	TCGA-DD-A3A0-01	GMPPA	ENST00000358215.3,ENST00000443704.1,ENST00000435316.1,ENST00000313597.5,ENST00000373908.1,ENST00000373917.3,ENST00000341142.3	chr2	220368804:220368935:220369949:220370084:220370179:220370253,	220369950	220370084	220369963	220369963	Frame_Shift_Del	G	-	p.G212fs
LIHC	TCGA-DD-A3A0-01	CHPF	ENST00000535926.1,ENST00000243776.6	chr2	220404093:220405364:220405667:220405847:220406337:220406911,	220405668	220405847	220405747	220405747	Frame_Shift_Del	G	-	p.P330fs
LIHC	TCGA-DD-A3A0-01	TMEM198	ENST00000344458.2,ENST00000373883.3	chr2	220409482:220409615:220412227:220412803:220413873:220414076,	220412228	220412803	220412254	220412254	Frame_Shift_Del	T	-	p.F65fs
LIHC	TCGA-DD-A3A0-01	STK11IP	ENST00000295641.10,ENST00000456909.1	chr2	220474084:220474262:220476325:220476556:220476676:220476780,	220476326	220476556	220476386	220476386	Frame_Shift_Del	G	-	p.R722fs
LIHC	TCGA-DD-A3A0-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220499992:220500218:220500394:220500613:220501023:220501172,	220500395	220500613	220500501	220500501	Frame_Shift_Del	C	-	p.Y693fs
LIHC	TCGA-DD-A3A0-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220501023:220501172:220501401:220501596:220502302:220502517,	220501402	220501596	220501412	220501412	Frame_Shift_Del	C	-	p.A784fs
LIHC	TCGA-DD-A3A0-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222291183:222291339:222294677:222294871:222298861:222298969,	222294678	222294871	222294713	222294713	Frame_Shift_Del	G	-	p.P885fs
LIHC	TCGA-DD-A3A0-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222291183:222291339:222294677:222294871:222298861:222298969,	222294678	222294871	222294728	222294728	Frame_Shift_Del	T	-	p.K880fs
LIHC	TCGA-DD-A3A0-01	SERPINE2	ENST00000258405.4	chr2	224862831:224863059:224866358:224866639:224903815:224904005,	224866359	224866639	224866413	224866413	Frame_Shift_Del	C	-	p.A69fs
LIHC	TCGA-DD-A3A0-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225367708:225367789:225368368:225368539:225370672:225370849,	225368369	225368539	225368413	225368413	Frame_Shift_Del	T	-	p.S445fs
LIHC	TCGA-DD-A3A0-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225367708:225367789:225368368:225368539:225370672:225370849,	225368369	225368539	225368504	225368504	Frame_Shift_Del	T	-	p.K414fs
LIHC	TCGA-DD-A3A0-01	DOCK10	ENST00000422684.1,ENST00000409592.3,ENST00000258390.7	chr2	225664878:225664980:225666632:225666757:225668828:225668930,	225666633	225666757	225666708	225666708	Frame_Shift_Del	T	-	p.T1434fs
LIHC	TCGA-DD-A3A0-01	RHBDD1	ENST00000392062.2,ENST00000341329.3	chr2	227729345:227729842:227731901:227732034:227771508:227771597,	227731902	227732034	227731962	227731962	Frame_Shift_Del	T	-	p.I165fs
LIHC	TCGA-DD-A3A0-01	COL4A4	ENST00000329662.7,ENST00000396625.3	chr2	227872733:227873020:227875028:227875217:227876896:227877013,	227875029	227875217	227875107	227875107	Frame_Shift_Del	G	-	p.L1482fs
LIHC	TCGA-DD-A3A0-01	SLC19A3	ENST00000258403.3,ENST00000425817.1	chr2	228560604:228560797:228563451:228564280:228566884:228567036,	228563452	228564280	228563479	228563479	Frame_Shift_Del	C	-	p.A318fs
LIHC	TCGA-DD-A3A0-01	SLC19A3	ENST00000258403.3,ENST00000425817.1	chr2	228560604:228560797:228563451:228564280:228566884:228567036,	228563452	228564280	228563834	228563834	Frame_Shift_Del	A	-	p.F199fs
LIHC	TCGA-DD-A3A0-01	DNER	ENST00000341772.4	chr2	230222344:230223367:230231588:230231835:230252980:230253112,	230231589	230231835	230231744	230231744	Frame_Shift_Del	G	-	p.A649fs
LIHC	TCGA-DD-A3A0-01	TRIP12	ENST00000459841.1,ENST00000283943.5,ENST00000389045.3,ENST00000418123.1,ENST00000389044.4	chr2	230638812:230638977:230642030:230642195:230643148:230643181,	230642031	230642195	230642054	230642054	Frame_Shift_Del	T	-	p.R1761fs
LIHC	TCGA-DD-A3A0-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661375	230661375	Frame_Shift_Del	T	-	p.S1175fs
LIHC	TCGA-DD-A3A0-01	TRIP12	ENST00000389044.4,ENST00000409677.1,ENST00000543084.1	chr2	230725121:230725247:230744697:230744844:230786595:230786619,	230744698	230744844	230744763	230744763	Frame_Shift_Del	C	-	p.G11fs
LIHC	TCGA-DD-A3A0-01	SLC16A14	ENST00000295190.4	chr2	230899697:230902247:230910460:230911438:230914476:230914620,	230910461	230911438	230911208	230911208	Frame_Shift_Del	G	-	p.L212fs
LIHC	TCGA-DD-A3A0-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000476126.1,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231135300:231135354:231149060:231149126:231150466:231150547,	231149061	231149126	231149107	231149107	Frame_Shift_Del	G	-	p.Q515fs
LIHC	TCGA-DD-A3A0-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231155174:231155279:231157360:231157503:231158985:231159033,	231157361	231157503	231157406	231157406	Frame_Shift_Del	C	-	p.T624fs
LIHC	TCGA-DD-A3A0-01	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000466710.1,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1	chr2	231314886:231314970:231325976:231326129:231327149:231327224,	231325977	231326129	231326010	231326010	Frame_Shift_Del	A	-	p.Q285fs
LIHC	TCGA-DD-A3A0-01	SP100	ENST00000431952.1	chr2	231372707:231372746:231375839:231375881:231403981:231404097,231371017:231371160:231375839:231375881:231403981:231404097,	231375840	231375881	231375875	231375875	Frame_Shift_Del	C	-	p.D696fs
LIHC	TCGA-DD-A3A0-01	PSMD1	ENST00000308696.6,ENST00000431051.1,ENST00000409643.1,ENST00000373635.4	chr2	231951830:231951895:232003449:232003564:232010953:232011070,	232003450	232003564	232003468	232003468	Frame_Shift_Del	A	-	p.P634fs
LIHC	TCGA-DD-A3A0-01	ARMC9	ENST00000440107.1,ENST00000349938.4,ENST00000482392.1,ENST00000483477.1	chr2	232070951:232071002:232072839:232072965:232079543:232079714,	232072840	232072965	232072894	232072894	Frame_Shift_Del	A	-	p.K36fs
LIHC	TCGA-DD-A3A0-01	ARMC9	ENST00000440107.1,ENST00000349938.4,ENST00000482392.1,ENST00000483477.1	chr2	232070951:232071002:232072839:232072965:232079543:232079714,	232072840	232072965	232072918	232072918	Frame_Shift_Del	A	-	p.K44fs
LIHC	TCGA-DD-A3A0-01	ARMC9	ENST00000349938.4,ENST00000486787.1,ENST00000428662.1,ENST00000483477.1	chr2	232160910:232160966:232196504:232196609:232209686:232209802,	232196505	232196609	232196606	232196606	Frame_Shift_Del	G	-	p.L625fs
LIHC	TCGA-DD-A3A0-01	PTMA	ENST00000466801.1,ENST00000412128.1,ENST00000468027.1,ENST00000409115.3,ENST00000448874.1,ENST00000410064.1,ENST00000409321.1	chr2	232576057:232576129:232576599:232576693:232577152:232577183,	232576600	232576693	232576607	232576607	Frame_Shift_Del	A	-	p.E42fs
LIHC	TCGA-DD-A3A0-01	PTMA	ENST00000341369.7	chr2	232576057:232576129:232576596:232576693:232577152:232577183,	232576597	232576693	232576607	232576607	Frame_Shift_Del	A	-	p.E42fs
LIHC	TCGA-DD-A3A0-01	COPS7B	ENST00000409295.1,ENST00000488111.1,ENST00000410024.1,ENST00000449174.1,ENST00000350033.3,ENST00000413197.1,ENST00000412922.2,ENST00000409091.1,ENST00000474042.1	chr2	232660896:232661018:232663568:232663674:232672196:232672332,	232663569	232663674	232663596	232663596	Frame_Shift_Del	G	-	p.L186fs
LIHC	TCGA-DD-A3A0-01	COPS7B	ENST00000461350.1,ENST00000410017.1	chr2	232663568:232663674:232665849:232665917:232672196:232672332,	232665850	232665917	232665869	232665869	Frame_Shift_Del	A	-	p.E214fs
LIHC	TCGA-DD-A3A0-01	COPS7B	ENST00000373608.3	chr2	232663568:232663674:232665864:232665917:232672196:232672332,	232665865	232665917	232665869	232665869	Frame_Shift_Del	A	-	p.E214fs
LIHC	TCGA-DD-A3A0-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000390005.5,ENST00000273009.6	chr2	232952196:232952431:232995328:232995429:233001181:233001429,	232995329	232995429	232995396	232995396	Frame_Shift_Del	T	-	p.A223fs
LIHC	TCGA-DD-A3A0-01	DIS3L2	ENST00000360410.4	chr2	232995328:232995429:233001181:233001433:233028172:233028230,	233001182	233001433	233001200	233001200	Frame_Shift_Del	A	-	p.K242fs
LIHC	TCGA-DD-A3A0-01	DIS3L2	ENST00000433430.1,ENST00000325385.7,ENST00000409307.1,ENST00000390005.5,ENST00000273009.6	chr2	232995328:232995429:233001181:233001429:233028168:233028342,	233001182	233001429	233001200	233001200	Frame_Shift_Del	A	-	p.K242fs
LIHC	TCGA-DD-A3A0-01	DIS3L2	ENST00000360410.4	chr2	232995328:232995429:233001181:233001433:233028172:233028230,	233001182	233001433	233001423	233001423	Frame_Shift_Del	C	-	p.A315fs
LIHC	TCGA-DD-A3A0-01	DIS3L2	ENST00000433430.1,ENST00000325385.7,ENST00000409307.1,ENST00000390005.5,ENST00000273009.6	chr2	232995328:232995429:233001181:233001429:233028168:233028342,	233001182	233001429	233001423	233001423	Frame_Shift_Del	C	-	p.A315fs
LIHC	TCGA-DD-A3A0-01	INPP5D	ENST00000538935.1,ENST00000359570.5,ENST00000496402.1,ENST00000451407.1	chr2	233986925:233986967:233990454:233990629:233995217:233995358,	233990455	233990629	233990537	233990537	Frame_Shift_Del	T	-	p.P144fs
LIHC	TCGA-DD-A3A0-01	INPP5D	ENST00000474278.1,ENST00000422935.1	chr2	233986925:233986967:233990457:233990629:233995217:233995358,	233990458	233990629	233990537	233990537	Frame_Shift_Del	T	-	p.P144fs
LIHC	TCGA-DD-A3A0-01	SAG	ENST00000471884.1,ENST00000409110.1,ENST00000412969.2,ENST00000474220.1,ENST00000476500.1	chr2	234250916:234250972:234255048:234255058:234255452:234255700,	234255049	234255058	234255055	234255055	Frame_Shift_Del	A	-	p.E370fs
LIHC	TCGA-DD-A3A0-01	DGKD	ENST00000264057.2,ENST00000490764.1,ENST00000474488.1,ENST00000409813.3	chr2	234346022:234346125:234346862:234347025:234350532:234350641,	234346863	234347025	234346924	234346924	Frame_Shift_Del	A	-	p.S328fs
LIHC	TCGA-DD-A3A0-01	DGKD	ENST00000264057.2,ENST00000490764.1,ENST00000474488.1,ENST00000409813.3	chr2	234346022:234346125:234346862:234347025:234350532:234350641,	234346863	234347025	234346981	234346981	Frame_Shift_Del	C	-	p.N347fs
LIHC	TCGA-DD-A3A0-01	DGKD	ENST00000264057.2,ENST00000490764.1,ENST00000474488.1,ENST00000409813.3	chr2	234346022:234346125:234346862:234347025:234350532:234350641,	234346863	234347025	234346990	234346990	Frame_Shift_Del	G	-	p.Q350fs
LIHC	TCGA-DD-A3A0-01	DGKD	ENST00000430834.1,ENST00000264057.2,ENST00000490764.1,ENST00000409813.3	chr2	234354268:234354408:234355357:234355442:234356732:234356827,	234355358	234355442	234355388	234355388	Frame_Shift_Del	C	-	p.L455fs
LIHC	TCGA-DD-A3A0-01	USP40	ENST00000450966.1,ENST00000427112.2,ENST00000251722.6	chr2	234438076:234438158:234442124:234442425:234449307:234449412,	234442125	234442425	234442246	234442246	Frame_Shift_Del	A	-	p.F449fs
LIHC	TCGA-DD-A3A0-01	MROH2A	ENST00000389758.3	chr2	234723227:234723323:234725426:234725531:234726647:234726771,	234725427	234725531	234725440	234725440	Frame_Shift_Del	G	-	p.W957fs
LIHC	TCGA-DD-A3A0-01	MROH2A	ENST00000487979.1,ENST00000389758.3	chr2	234738265:234738421:234740054:234740186:234740822:234740925,	234740055	234740186	234740115	234740115	Frame_Shift_Del	C	-	p.P1557fs
LIHC	TCGA-DD-A3A0-01	TRPM8	ENST00000444298.1,ENST00000439148.1,ENST00000324695.4,ENST00000433712.2	chr2	234916713:234916747:234923205:234923298:234925942:234925973,	234923206	234923298	234923251	234923251	Frame_Shift_Del	A	-	p.K1104fs
LIHC	TCGA-DD-A3A0-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235950972	235950972	Frame_Shift_Del	C	-	p.A520fs
LIHC	TCGA-DD-A3A0-01	AGAP1	ENST00000409538.1,ENST00000428334.2,ENST00000336665.5,ENST00000304032.8,ENST00000409457.1	chr2	236653407:236653483:236658997:236659132:236706402:236706530,	236658998	236659132	236659022	236659022	Frame_Shift_Del	G	-	p.R453fs
LIHC	TCGA-DD-A3A0-01	AGAP1	ENST00000409538.1,ENST00000336665.5	chr2	236839408:236839567:236877105:236877267:236945204:236945341,236817485:236817550:236877105:236877267:236945204:236945341,	236877106	236877267	236877137	236877137	Frame_Shift_Del	C	-	p.S717fs
LIHC	TCGA-DD-A3A0-01	IQCA1	ENST00000309507.5,ENST00000409907.3,ENST00000418802.1,ENST00000465621.1,ENST00000254653.5	chr2	237308055:237308131:237327791:237327914:237349682:237349767,	237327792	237327914	237327822	237327822	Frame_Shift_Del	T	-	p.K368fs
LIHC	TCGA-DD-A3A0-01	IQCA1	ENST00000309507.5,ENST00000409907.3,ENST00000418802.1,ENST00000465621.1,ENST00000254653.5	chr2	237308055:237308131:237327791:237327914:237349682:237349767,	237327792	237327914	237327843	237327843	Frame_Shift_Del	T	-	p.K361fs
LIHC	TCGA-DD-A3A0-01	IQCA1	ENST00000431676.2,ENST00000309507.5,ENST00000409907.3,ENST00000418802.1,ENST00000254653.5	chr2	237395476:237395543:237396642:237396834:237402410:237402530,	237396643	237396834	237396649	237396649	Frame_Shift_Del	A	-	p.I214fs
LIHC	TCGA-DD-A3A0-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000491769.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238242092:238242191:238243268:238243532:238244777:238244823,	238243269	238243532	238243464	238243464	Frame_Shift_Del	C	-	p.A3012fs
LIHC	TCGA-DD-A3A0-01	MLPH	ENST00000437893.1	chr2	238428621:238428672:238434243:238434448:238443206:238443290,	238434244	238434448	238434429	238434429	Frame_Shift_Del	G	-	p.L287fs
LIHC	TCGA-DD-A3A0-01	TRAF3IP1	ENST00000391993.3,ENST00000391994.2,ENST00000373327.4	chr2	239237571:239237983:239241464:239241536:239242600:239242676,	239241465	239241536	239241520	239241520	Frame_Shift_Del	C	-	p.S324fs
LIHC	TCGA-DD-A3A0-01	TRAF3IP1	ENST00000462122.1,ENST00000391993.3,ENST00000391994.2,ENST00000373327.4	chr2	239261813:239261850:239264644:239264721:239306099:239306320,	239264645	239264721	239264656	239264656	Frame_Shift_Del	A	-	p.K543fs
LIHC	TCGA-DD-A3A0-01	TRAF3IP1	ENST00000462122.1,ENST00000391993.3,ENST00000391994.2,ENST00000373327.4	chr2	239261813:239261850:239264644:239264721:239306099:239306320,	239264645	239264721	239264713	239264713	Frame_Shift_Del	G	-	p.G561fs
LIHC	TCGA-DD-A3A0-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954221	240954221	Frame_Shift_Del	G	-	p.H202fs
LIHC	TCGA-DD-A3A0-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954221	240954221	Frame_Shift_Del	G	-	p.H202fs
LIHC	TCGA-DD-A3A0-01	ANKMY1	ENST00000401804.1,ENST00000272972.3,ENST00000403283.1,ENST00000361678.4,ENST00000373320.4,ENST00000373318.2,ENST00000391987.1,ENST00000406958.1	chr2	241452236:241452359:241459778:241459950:241463301:241463426,	241459779	241459950	241459896	241459896	Frame_Shift_Del	G	-	p.P540fs
LIHC	TCGA-DD-A3A0-01	RNPEPL1	ENST00000437406.1,ENST00000471657.1,ENST00000486058.1,ENST00000270357.4,ENST00000481757.1,ENST00000464550.1	chr2	241516016:241516182:241516264:241516407:241517015:241517059,	241516265	241516407	241516298	241516298	Frame_Shift_Del	C	-	p.S361fs
LIHC	TCGA-DD-A3A0-01	SNED1	ENST00000342631.6,ENST00000401884.1,ENST00000310397.8,ENST00000405547.3	chr2	241989233:241989350:241991160:241991277:241991457:241991574,	241991161	241991277	241991231	241991231	Frame_Shift_Del	C	-	p.Y602fs
LIHC	TCGA-DD-A3A0-01	PPP1R7	ENST00000439916.1	chr2	242097221:242097277:242097880:242097964:242098627:242098718,	242097881	242097964	242097907	242097907	Frame_Shift_Del	T	-	p.D82fs
LIHC	TCGA-DD-A3A0-01	PPP1R7	ENST00000438799.1,ENST00000406106.3,ENST00000234038.6,ENST00000272983.8,ENST00000423280.1,ENST00000427172.1,ENST00000401987.1,ENST00000402734.1,ENST00000407025.1,ENST00000485630.1	chr2	242097221:242097277:242097898:242097964:242098627:242098718,	242097899	242097964	242097907	242097907	Frame_Shift_Del	T	-	p.D82fs
LIHC	TCGA-DD-A3A0-01	PPP1R7	ENST00000467159.1,ENST00000404405.3,ENST00000450367.1	chr2	242097221:242097277:242097898:242097946:242098627:242098718,	242097899	242097946	242097907	242097907	Frame_Shift_Del	T	-	p.D82fs
LIHC	TCGA-DD-A3A0-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000452931.1,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000310931.4	chr2	242186470:242186557:242187417:242187531:242187658:242187763,	242187418	242187531	242187498	242187498	Frame_Shift_Del	T	-	p.S551fs
LIHC	TCGA-DD-A3A0-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000467435.1,ENST00000453141.1,ENST00000310931.4	chr2	242192414:242192450:242192807:242192912:242194465:242194573,	242192808	242192912	242192814	242192814	Frame_Shift_Del	T	-	p.K429fs
LIHC	TCGA-DD-A3A0-01	HDLBP	ENST00000391975.1,ENST00000391976.2,ENST00000310931.4	chr2	242194556:242194573:242194788:242194995:242195598:242195814,	242194789	242194995	242194991	242194991	Frame_Shift_Del	T	-	p.K294fs
LIHC	TCGA-DD-A3A0-01	STK25	ENST00000487962.1,ENST00000478403.1,ENST00000405883.3,ENST00000535007.1,ENST00000316586.4,ENST00000405585.1,ENST00000401869.1,ENST00000543554.1,ENST00000403346.3	chr2	242437030:242437102:242437649:242437764:242438053:242438199,	242437650	242437764	242437714	242437714	Frame_Shift_Del	G	-	p.P323fs
LIHC	TCGA-DD-A3A0-01	DTYMK	ENST00000400770.2	chr2	242617866:242618064:242625183:242625292:242626068:242626127,	242625184	242625292	242625206	242625206	Frame_Shift_Del	A	-	p.S73fs
LIHC	TCGA-DD-A3A0-01	D2HGDH	ENST00000400769.2	chr2	242690660:242690803:242695263:242695429:242707124:242707363,242684123:242684292:242695263:242695429:242707124:242707363,	242695264	242695429	242695337	242695337	Frame_Shift_Del	C	-	p.S405fs
LIHC	TCGA-DD-A3A0-01	CHL1	ENST00000445697.1	chr3	433357:433480:436375:436555:440699:440831,	436376	436555	436515	436515	Frame_Shift_Del	A	-	p.G1018fs
LIHC	TCGA-DD-A3A0-01	CHL1	ENST00000445697.1	chr3	433357:433480:436375:436555:440699:440831,	436376	436555	436527	436527	Frame_Shift_Del	G	-	p.T1022fs
LIHC	TCGA-DD-A3A0-01	CHL1	ENST00000453040.1,ENST00000397491.2,ENST00000256509.2	chr3	436375:436555:439909:440068:440699:440831,	439910	440068	440036	440036	Frame_Shift_Del	T	-	p.I1074fs
LIHC	TCGA-DD-A3A0-01	IL5RA	ENST00000430514.2,ENST00000446632.2,ENST00000383846.1,ENST00000456302.1,ENST00000311981.8,ENST00000256452.3,ENST00000438560.1	chr3	3133907:3134046:3136982:3137128:3139553:3139741,	3136983	3137128	3137043	3137043	Frame_Shift_Del	A	-	p.F265fs
LIHC	TCGA-DD-A3A0-01	SETMAR	ENST00000425863.1	chr3	4345054:4345210:4354581:4354913:4355350:4355445,4345054:4345210:4354581:4354913:4355330:4355445,	4354582	4354913	4354660	4354660	Frame_Shift_Del	A	-	p.K79fs
LIHC	TCGA-DD-A3A0-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4776847:4777038:4808213:4808394:4810194:4810448,	4808214	4808394	4808220	4808220	Frame_Shift_Del	T	-	p.F1837fs
LIHC	TCGA-DD-A3A0-01	EDEM1	ENST00000465369.1,ENST00000445686.1,ENST00000256497.4	chr3	5249777:5249948:5251859:5251933:5252804:5252875,	5251860	5251933	5251915	5251915	Frame_Shift_Del	A	-	p.E522fs
LIHC	TCGA-DD-A3A0-01	LMCD1	ENST00000157600.3,ENST00000535732.1,ENST00000415597.1	chr3	8543573:8543666:8578870:8579126:8590253:8590549,8574422:8574511:8578870:8579126:8590253:8590549,	8578871	8579126	8579048	8579048	Frame_Shift_Del	C	-	p.N103fs
LIHC	TCGA-DD-A3A0-01	RAD18	ENST00000264926.2	chr3	8953995:8954056:8955327:8955404:8977554:8977739,	8955328	8955404	8955396	8955396	Frame_Shift_Del	T	-	p.I300fs
LIHC	TCGA-DD-A3A0-01	SETD5	ENST00000466242.1,ENST00000413704.1,ENST00000443339.1,ENST00000493918.1,ENST00000402198.1,ENST00000302463.6,ENST00000399686.2,ENST00000407969.1,ENST00000402466.1,ENST00000406341.1	chr3	9488733:9488991:9489369:9489690:9490071:9490314,	9489370	9489690	9489613	9489613	Frame_Shift_Del	G	-	p.G578fs
LIHC	TCGA-DD-A3A0-01	SETD5	ENST00000466242.1,ENST00000413704.1,ENST00000493918.1,ENST00000402198.1,ENST00000302463.6,ENST00000399686.2,ENST00000407969.1,ENST00000402466.1,ENST00000406341.1	chr3	9506108:9506356:9512142:9512613:9514919:9515056,	9512143	9512613	9512154	9512154	Frame_Shift_Del	A	-	p.R814fs
LIHC	TCGA-DD-A3A0-01	SETD5	ENST00000466242.1,ENST00000413704.1,ENST00000493918.1,ENST00000402198.1,ENST00000302463.6,ENST00000399686.2,ENST00000407969.1,ENST00000402466.1,ENST00000406341.1	chr3	9506108:9506356:9512142:9512613:9514919:9515056,	9512143	9512613	9512172	9512172	Frame_Shift_Del	A	-	p.A820fs
LIHC	TCGA-DD-A3A0-01	SETD5	ENST00000466242.1,ENST00000413704.1,ENST00000493918.1,ENST00000402198.1,ENST00000302463.6,ENST00000399686.2,ENST00000407969.1,ENST00000402466.1,ENST00000406341.1	chr3	9506108:9506356:9512142:9512613:9514919:9515056,	9512143	9512613	9512381	9512381	Frame_Shift_Del	C	-	p.S890fs
LIHC	TCGA-DD-A3A0-01	MTMR14	ENST00000414996.1,ENST00000351233.5,ENST00000353332.5,ENST00000296003.4,ENST00000420925.1	chr3	9726894:9726931:9729504:9729575:9730379:9730438,	9729505	9729575	9729525	9729525	Frame_Shift_Del	T	-	p.N395fs
LIHC	TCGA-DD-A3A0-01	CPNE9	ENST00000273027.6,ENST00000383832.3,ENST00000383831.3	chr3	9759712:9759894:9760158:9760286:9767632:9767735,	9760159	9760286	9760215	9760215	Frame_Shift_Del	T	-	p.Y390fs
LIHC	TCGA-DD-A3A0-01	CPNE9	ENST00000273027.6,ENST00000383832.3,ENST00000383831.3	chr3	9759712:9759894:9760158:9760286:9767632:9767735,	9760159	9760286	9760258	9760258	Frame_Shift_Del	T	-	p.F405fs
LIHC	TCGA-DD-A3A0-01	BRPF1	ENST00000457855.1,ENST00000383829.2,ENST00000302054.3,ENST00000424362.1	chr3	9785264:9785585:9785907:9786192:9786691:9786839,	9785908	9786192	9785912	9785912	Frame_Shift_Del	G	-	p.L880fs
LIHC	TCGA-DD-A3A0-01	BRPF1	ENST00000457855.1,ENST00000383829.2,ENST00000302054.3,ENST00000424362.1	chr3	9785264:9785585:9785907:9786192:9786691:9786839,	9785908	9786192	9786089	9786089	Frame_Shift_Del	C	-	p.L939fs
LIHC	TCGA-DD-A3A0-01	CAMK1	ENST00000397277.2,ENST00000256460.3,ENST00000421120.1	chr3	9801355:9801434:9802339:9802452:9803144:9803220,	9802340	9802452	9802393	9802393	Frame_Shift_Del	A	-	p.L231fs
LIHC	TCGA-DD-A3A0-01	TTLL3	ENST00000547186.1,ENST00000430793.1,ENST00000483051.1,ENST00000426895.4	chr3	9870643:9871079:9874787:9874929:9876364:9876591,	9874788	9874929	9874880	9874880	Frame_Shift_Del	G	-	p.M549fs
LIHC	TCGA-DD-A3A0-01	RPUSD3	ENST00000424438.1	chr3	9883882:9883927:9885148:9885285:9885573:9885660,9883666:9883766:9885148:9885285:9885573:9885660,9883882:9883927:9885148:9885285:9885408:9885626,	9885149	9885285	9885236	9885236	Frame_Shift_Del	C	-	p.D59fs
LIHC	TCGA-DD-A3A0-01	IL17RC	ENST00000490512.1,ENST00000412901.1,ENST00000438091.1,ENST00000436503.1	chr3	9959610:9959759:9960183:9960293:9962174:9962284,	9960184	9960293	9960242	9960242	Frame_Shift_Del	C	-	p.V209fs
LIHC	TCGA-DD-A3A0-01	IL17RC	ENST00000416074.2,ENST00000451231.1	chr3	9959610:9959759:9960218:9960293:9962174:9962284,	9960219	9960293	9960242	9960242	Frame_Shift_Del	C	-	p.V209fs
LIHC	TCGA-DD-A3A0-01	FANCD2	ENST00000287647.3,ENST00000431693.1,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10074515:10074656:10076152:10076220:10076378:10076482,	10076153	10076220	10076172	10076172	Frame_Shift_Del	C	-	p.F75fs
LIHC	TCGA-DD-A3A0-01	FANCD2	ENST00000287647.3,ENST00000431693.1,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10074515:10074656:10076152:10076220:10076378:10076482,	10076153	10076220	10076218	10076218	Frame_Shift_Del	A	-	p.K91fs
LIHC	TCGA-DD-A3A0-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10108892:10109001:10114554:10114665:10114936:10115046,	10114555	10114665	10114597	10114597	Frame_Shift_Del	A	-	p.E846fs
LIHC	TCGA-DD-A3A0-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10114936:10115046:10116213:10116357:10119764:10119881,	10116214	10116357	10116267	10116267	Frame_Shift_Del	T	-	p.A923fs
LIHC	TCGA-DD-A3A0-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10127495:10127606:10128817:10128948:10130132:10130226,	10128818	10128948	10128904	10128904	Frame_Shift_Del	T	-	p.I1141fs
LIHC	TCGA-DD-A3A0-01	ATP2B2	ENST00000360273.2,ENST00000352432.4	chr3	10419935:10420094:10420926:10420968:10429960:10430086,10419935:10420094:10420926:10420968:10426951:10427008,	10420927	10420968	10420940	10420940	Frame_Shift_Del	G	-	p.A343fs
LIHC	TCGA-DD-A3A0-01	ATP2B2	ENST00000360273.2,ENST00000352432.4	chr3	10419935:10420094:10420926:10420968:10429960:10430086,10419935:10420094:10420926:10420968:10426951:10427008,	10420927	10420968	10420963	10420963	Frame_Shift_Del	T	-	p.M336fs
LIHC	TCGA-DD-A3A0-01	SLC6A11	ENST00000254488.2	chr3	10885898:10886031:10916645:10916780:10953774:10953878,	10916646	10916780	10916669	10916669	Frame_Shift_Del	C	-	p.F260fs
LIHC	TCGA-DD-A3A0-01	SLC6A11	ENST00000254488.2	chr3	10885898:10886031:10916645:10916780:10953774:10953878,	10916646	10916780	10916718	10916718	Frame_Shift_Del	G	-	p.G277fs
LIHC	TCGA-DD-A3A0-01	VGLL4	ENST00000273038.3,ENST00000445411.1,ENST00000404339.1,ENST00000451674.2,ENST00000424529.2,ENST00000426568.1,ENST00000413604.1,ENST00000430365.2	chr3	11600231:11600301:11600805:11600929:11606270:11606493,	11600806	11600929	11600921	11600921	Frame_Shift_Del	G	-	p.P162fs
LIHC	TCGA-DD-A3A0-01	RAF1	ENST00000251849.4,ENST00000534997.1,ENST00000542177.1,ENST00000471449.1,ENST00000423275.1,ENST00000442415.2,ENST00000432427.2	chr3	12625844:12626156:12626345:12626480:12626620:12626752,	12626346	12626480	12626352	12626352	Frame_Shift_Del	A	-	p.F599fs
LIHC	TCGA-DD-A3A0-01	RAF1	ENST00000442415.2	chr3	12650731:12650834:12660013:12660246:12705311:12705616,12653448:12653561:12660013:12660246:12705311:12705616,	12660014	12660246	12660176	12660176	Frame_Shift_Del	A	-	p.F15fs
LIHC	TCGA-DD-A3A0-01	NUP210	ENST00000254508.5	chr3	13370270:13370446:13371959:13372134:13373792:13373884,	13371960	13372134	13372087	13372087	Frame_Shift_Del	T	-	p.K1328fs
LIHC	TCGA-DD-A3A0-01	FBLN2	ENST00000535798.1,ENST00000295760.7	chr3	13660403:13660517:13661229:13661331:13667944:13668079,	13661230	13661331	13661265	13661265	Frame_Shift_Del	G	-	p.G698fs
LIHC	TCGA-DD-A3A0-01	FBLN2	ENST00000535798.1,ENST00000404922.3,ENST00000492059.1,ENST00000295760.7	chr3	13670404:13670548:13670663:13670792:13671319:13671445,	13670664	13670792	13670781	13670781	Frame_Shift_Del	G	-	p.R944fs
LIHC	TCGA-DD-A3A0-01	CHCHD4	ENST00000396914.3	chr3	14154643:14154694:14157925:14158024:14166154:14166249,	14157926	14158024	14157983	14157983	Frame_Shift_Del	T	-	p.T35fs
LIHC	TCGA-DD-A3A0-01	SLC6A6	ENST00000360861.3,ENST00000427436.1,ENST00000416216.2	chr3	14457919:14457961:14485131:14485371:14487224:14487324,	14485132	14485371	14485250	14485250	Frame_Shift_Del	A	-	p.G36fs
LIHC	TCGA-DD-A3A0-01	SLC6A6	ENST00000458124.1,ENST00000454876.2	chr3	14457919:14457961:14485135:14485371:14487224:14487324,	14485136	14485371	14485250	14485250	Frame_Shift_Del	A	-	p.G36fs
LIHC	TCGA-DD-A3A0-01	SLC6A6	ENST00000458124.1,ENST00000360861.3,ENST00000427436.1,ENST00000454876.2,ENST00000416216.2	chr3	14485135:14485371:14487224:14487359:14489089:14489324,	14487225	14487359	14487317	14487317	Frame_Shift_Del	G	-	p.G109fs
LIHC	TCGA-DD-A3A0-01	SLC6A6	ENST00000458124.1,ENST00000360861.3,ENST00000427436.1,ENST00000454876.2	chr3	14489089:14489324:14499457:14499590:14508023:14508158,	14499458	14499590	14499532	14499532	Frame_Shift_Del	T	-	p.L226fs
LIHC	TCGA-DD-A3A0-01	SLC6A6	ENST00000458124.1,ENST00000427436.1	chr3	14509360:14509464:14513712:14513825:14518712:14518850,	14513713	14513825	14513772	14513772	Frame_Shift_Del	T	-	p.F386fs
LIHC	TCGA-DD-A3A0-01	NR2C2	ENST00000406272.2,ENST00000393102.3,ENST00000478572.1,ENST00000323373.6,ENST00000475707.1,ENST00000425241.1	chr3	15070092:15070226:15071781:15071959:15073885:15074007,	15071782	15071959	15071849	15071849	Frame_Shift_Del	G	-	p.G334fs
LIHC	TCGA-DD-A3A0-01	MRPS25	ENST00000420267.1	chr3	15094031:15094140:15094797:15094974:15100875:15100982,15091387:15091442:15094797:15094974:15100875:15100982,	15094798	15094974	15094903	15094903	Frame_Shift_Del	T	-	p.I105fs
LIHC	TCGA-DD-A3A0-01	MRPS25	ENST00000253686.2	chr3	15091387:15091442:15094886:15094974:15100875:15100982,15094031:15094140:15094886:15094974:15100875:15100982,	15094887	15094974	15094903	15094903	Frame_Shift_Del	T	-	p.I105fs
LIHC	TCGA-DD-A3A0-01	MRPS25	ENST00000420267.1	chr3	15094031:15094140:15094797:15094974:15100875:15100982,15091387:15091442:15094797:15094974:15100875:15100982,	15094798	15094974	15094966	15094966	Frame_Shift_Del	C	-	p.E84fs
LIHC	TCGA-DD-A3A0-01	MRPS25	ENST00000253686.2	chr3	15091387:15091442:15094886:15094974:15100875:15100982,15094031:15094140:15094886:15094974:15100875:15100982,	15094887	15094974	15094966	15094966	Frame_Shift_Del	C	-	p.E84fs
LIHC	TCGA-DD-A3A0-01	CAPN7	ENST00000472400.1,ENST00000253693.2,ENST00000463417.1	chr3	15288833:15288964:15292437:15292530:15292622:15292753,	15292438	15292530	15292490	15292490	Frame_Shift_Del	G	-	p.G753fs
LIHC	TCGA-DD-A3A0-01	CAPN7	ENST00000443567.1	chr3	15288833:15288964:15292481:15292530:15292622:15292753,	15292482	15292530	15292490	15292490	Frame_Shift_Del	G	-	p.G753fs
LIHC	TCGA-DD-A3A0-01	METTL6	ENST00000383790.3,ENST00000443029.1,ENST00000450816.2	chr3	15452842:15452944:15455527:15455669:15457004:15457090,15452842:15452944:15455527:15455669:15456236:15456421,15452842:15452944:15455527:15455669:15457278:15457367,	15455528	15455669	15455535	15455535	Frame_Shift_Del	A	-	p.F222fs
LIHC	TCGA-DD-A3A0-01	ANKRD28	ENST00000399451.2,ENST00000497037.1,ENST00000383777.1,ENST00000412318.1	chr3	15719715:15719861:15720807:15720891:15720982:15721070,	15720808	15720891	15720813	15720813	Frame_Shift_Del	T	-	p.K822fs
LIHC	TCGA-DD-A3A0-01	RFTN1	ENST00000334133.4,ENST00000432519.1	chr3	16399438:16399554:16411582:16411786:16419224:16419609,	16411583	16411786	16411765	16411765	Frame_Shift_Del	A	-	p.F283fs
LIHC	TCGA-DD-A3A0-01	TBC1D5	ENST00000445294.1,ENST00000446818.2,ENST00000253692.7	chr3	17469941:17470011:17549965:17550097:17664139:17664257,17469941:17470011:17549965:17550097:17783972:17783990,17447963:17448018:17549965:17550097:17664139:17664257,17447963:17448018:17549965:17550097:17665340:17665405,17447963:17448018:17549965:17550097:17783972:17783990,17469941:17470011:17549965:17550097:17665340:17665405,	17549966	17550097	17549994	17549994	Frame_Shift_Del	G	-	p.P23fs
LIHC	TCGA-DD-A3A0-01	KAT2B	ENST00000426228.1,ENST00000263754.4	chr3	20113824:20113951:20136754:20136900:20141353:20141446,	20136755	20136900	20136764	20136764	Frame_Shift_Del	T	-	p.V147fs
LIHC	TCGA-DD-A3A0-01	THRB	ENST00000416420.1,ENST00000413780.1,ENST00000396671.2,ENST00000356447.4	chr3	24188208:24188313:24193880:24193981:24231564:24231825,	24193881	24193981	24193971	24193971	Frame_Shift_Del	G	-	p.P98fs
LIHC	TCGA-DD-A3A0-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25672291:25672430:25673936:25674074:25674183:25674285,	25673937	25674074	25674051	25674051	Frame_Shift_Del	A	-	p.F379fs
LIHC	TCGA-DD-A3A0-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9	chr3	25770623:25770809:25773809:25773974:25775362:25775469,	25773810	25773974	25773865	25773865	Frame_Shift_Del	C	-	p.G439fs
LIHC	TCGA-DD-A3A0-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000417874.2,ENST00000280699.9	chr3	25775362:25775473:25777494:25777640:25778824:25778946,	25777495	25777640	25777501	25777501	Frame_Shift_Del	T	-	p.K381fs
LIHC	TCGA-DD-A3A0-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000417874.2,ENST00000280699.9	chr3	25775362:25775473:25777494:25777640:25778824:25778946,	25777495	25777640	25777506	25777506	Frame_Shift_Del	A	-	p.S380fs
LIHC	TCGA-DD-A3A0-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781128	25781128	Frame_Shift_Del	C	-	p.G274fs
LIHC	TCGA-DD-A3A0-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781223	25781223	Frame_Shift_Del	A	-	p.F242fs
LIHC	TCGA-DD-A3A0-01	NEK10	ENST00000341435.5,ENST00000429845.2	chr3	27329188:27329234:27332107:27332245:27332752:27332881,	27332108	27332245	27332175	27332175	Frame_Shift_Del	T	-	p.K559fs
LIHC	TCGA-DD-A3A0-01	SLC4A7	ENST00000440156.1,ENST00000454389.1,ENST00000428386.1,ENST00000455077.1,ENST00000419036.1,ENST00000437179.1,ENST00000295736.5,ENST00000428179.1,ENST00000446700.1,ENST00000388777.4,ENST00000435667.2,ENST00000445684.1	chr3	27446320:27446454:27450846:27451021:27453132:27453239,	27450847	27451021	27450974	27450974	Frame_Shift_Del	A	-	p.F596fs
LIHC	TCGA-DD-A3A0-01	ZCWPW2	ENST00000419130.1,ENST00000383768.2,ENST00000457897.1,ENST00000421010.1	chr3	28555554:28555613:28557044:28557112:28562482:28562607,	28557045	28557112	28557099	28557099	Frame_Shift_Del	A	-	p.S257fs
LIHC	TCGA-DD-A3A0-01	RBMS3	ENST00000383766.2	chr3	29323106:29323247:29476236:29476406:29529931:29529990,	29476237	29476406	29476257	29476257	Frame_Shift_Del	C	-	p.H32fs
LIHC	TCGA-DD-A3A0-01	RBMS3	ENST00000445033.1,ENST00000396583.3,ENST00000383767.2,ENST00000456853.1,ENST00000273139.9,ENST00000452462.1	chr3	29323106:29323247:29476233:29476406:29529931:29529990,	29476234	29476406	29476257	29476257	Frame_Shift_Del	C	-	p.H32fs
LIHC	TCGA-DD-A3A0-01	RBMS3	ENST00000383766.2	chr3	29323106:29323247:29476236:29476406:29529931:29529990,	29476237	29476406	29476336	29476336	Frame_Shift_Del	A	-	p.K59fs
LIHC	TCGA-DD-A3A0-01	RBMS3	ENST00000445033.1,ENST00000396583.3,ENST00000383767.2,ENST00000456853.1,ENST00000273139.9,ENST00000452462.1	chr3	29323106:29323247:29476233:29476406:29529931:29529990,	29476234	29476406	29476336	29476336	Frame_Shift_Del	A	-	p.K59fs
LIHC	TCGA-DD-A3A0-01	STT3B	ENST00000423527.1,ENST00000295770.2	chr3	31575116:31575178:31617887:31617996:31621300:31621588,31574463:31574804:31617887:31617996:31621300:31621588,	31617888	31617996	31617925	31617925	Frame_Shift_Del	G	-	p.G118fs
LIHC	TCGA-DD-A3A0-01	STT3B	ENST00000423527.1,ENST00000295770.2	chr3	31575116:31575178:31617887:31617996:31621300:31621588,31574463:31574804:31617887:31617996:31621300:31621588,	31617888	31617996	31617937	31617937	Frame_Shift_Del	T	-	p.F122fs
LIHC	TCGA-DD-A3A0-01	STT3B	ENST00000423527.1,ENST00000295770.2,ENST00000462235.1,ENST00000453168.1	chr3	31621300:31621588:31638289:31638355:31641851:31641951,	31638290	31638355	31638315	31638315	Frame_Shift_Del	T	-	p.V246fs
LIHC	TCGA-DD-A3A0-01	STT3B	ENST00000423527.1,ENST00000295770.2,ENST00000436236.1,ENST00000453168.1	chr3	31656596:31656695:31658420:31658567:31659431:31659480,	31658421	31658567	31658426	31658426	Frame_Shift_Del	T	-	p.F328fs
LIHC	TCGA-DD-A3A0-01	STT3B	ENST00000295770.2	chr3	31659431:31659480:31661167:31661322:31663588:31663800,	31661168	31661322	31661295	31661295	Frame_Shift_Del	A	-	p.K434fs
LIHC	TCGA-DD-A3A0-01	OSBPL10	ENST00000396556.2,ENST00000485205.1,ENST00000467955.1	chr3	31789505:31789612:31871531:31871723:31917924:31918004,	31871532	31871723	31871622	31871622	Frame_Shift_Del	G	-	p.P213fs
LIHC	TCGA-DD-A3A0-01	GPD1L	ENST00000282541.5	chr3	32148124:32148250:32169567:32169745:32180078:32180219,	32169568	32169745	32169702	32169702	Frame_Shift_Del	A	-	p.E61fs
LIHC	TCGA-DD-A3A0-01	GPD1L	ENST00000282541.5,ENST00000428684.1	chr3	32188113:32188226:32200367:32200601:32201059:32201107,	32200368	32200601	32200535	32200535	Frame_Shift_Del	C	-	p.D262fs
LIHC	TCGA-DD-A3A0-01	CMTM8	ENST00000307526.3	chr3	32280170:32280611:32398864:32399038:32409363:32409480,	32398865	32399038	32399015	32399015	Frame_Shift_Del	C	-	p.P100fs
LIHC	TCGA-DD-A3A0-01	DYNC1LI1	ENST00000273130.4,ENST00000481915.1	chr3	32578502:32578596:32582528:32582698:32586367:32586598,	32582529	32582698	32582632	32582632	Frame_Shift_Del	T	-	p.N212fs
LIHC	TCGA-DD-A3A0-01	DYNC1LI1	ENST00000273130.4,ENST00000481915.1	chr3	32586480:32586598:32587340:32587457:32611837:32611911,	32587341	32587457	32587412	32587412	Frame_Shift_Del	C	-	p.G89fs
LIHC	TCGA-DD-A3A0-01	CNOT10	ENST00000463006.1,ENST00000538368.1,ENST00000485136.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5	chr3	32745359:32745454:32746302:32746464:32750161:32750267,	32746303	32746464	32746405	32746405	Frame_Shift_Del	A	-	p.K74fs
LIHC	TCGA-DD-A3A0-01	GLB1	ENST00000399402.3,ENST00000307363.5,ENST00000445488.2,ENST00000438227.1,ENST00000446732.1	chr3	33094982:33095041:33099580:33099761:33106954:33107049,	33099581	33099761	33099735	33099735	Frame_Shift_Del	A	-	p.F193fs
LIHC	TCGA-DD-A3A0-01	CRTAP	ENST00000449224.1	chr3	33155545:33156040:33161835:33161985:33165899:33166071,	33161836	33161985	33161838	33161838	Frame_Shift_Del	A	-	p.A158fs
LIHC	TCGA-DD-A3A0-01	CRTAP	ENST00000449224.1	chr3	33171430:33171559:33174046:33174192:33175673:33175757,33165899:33166071:33174046:33174192:33175673:33175757,	33174047	33174192	33174068	33174068	Frame_Shift_Del	C	-	p.A315fs
LIHC	TCGA-DD-A3A0-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000459659.1,ENST00000484478.1	chr3	33863526:33863574:33866678:33866832:33867971:33868031,	33866679	33866832	33866716	33866716	Frame_Shift_Del	T	-	p.V167fs
LIHC	TCGA-DD-A3A0-01	PDCD6IP	ENST00000457054.2	chr3	33867971:33868072:33870329:33870461:33877535:33877664,	33870330	33870461	33870332	33870332	Frame_Shift_Del	T	-	p.Y240fs
LIHC	TCGA-DD-A3A0-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000487821.1	chr3	33870344:33870461:33877535:33877758:33879695:33879733,	33877536	33877758	33877752	33877752	Frame_Shift_Del	T	-	p.F351fs
LIHC	TCGA-DD-A3A0-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000473593.1	chr3	33905497:33905621:33906734:33906922:33907842:33907960,	33906735	33906922	33906750	33906750	Frame_Shift_Del	C	-	p.P755fs
LIHC	TCGA-DD-A3A0-01	ARPP21	ENST00000417925.1,ENST00000337271.5,ENST00000444190.1,ENST00000458225.1,ENST00000187397.4	chr3	35725217:35725307:35729230:35729375:35730798:35730877,	35729231	35729375	35729346	35729346	Frame_Shift_Del	A	-	p.E126fs
LIHC	TCGA-DD-A3A0-01	TRANK1	ENST00000429976.2,ENST00000428977.2,ENST00000301807.6	chr3	36872363:36875410:36876252:36876398:36879862:36879995,	36876253	36876398	36876379	36876379	Frame_Shift_Del	A	-	p.F1802fs
LIHC	TCGA-DD-A3A0-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36898060	36898060	Frame_Shift_Del	G	-	p.P1007fs
LIHC	TCGA-DD-A3A0-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36898417	36898417	Frame_Shift_Del	C	-	p.G888fs
LIHC	TCGA-DD-A3A0-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37114280:37114373:37116514:37116607,37107714:37107816:37114280:37114373:37116514:37116607,	37114281	37114373	37114286	37114286	Frame_Shift_Del	T	-	p.I487fs
LIHC	TCGA-DD-A3A0-01	GOLGA4	ENST00000435830.2,ENST00000361924.2,ENST00000437131.1,ENST00000450863.2,ENST00000356847.4	chr3	37340323:37340511:37340778:37340862:37343675:37343823,	37340779	37340862	37340829	37340829	Frame_Shift_Del	A	-	p.A351fs
LIHC	TCGA-DD-A3A0-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365107	37365107	Frame_Shift_Del	A	-	p.E577fs
LIHC	TCGA-DD-A3A0-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365263	37365263	Frame_Shift_Del	A	-	p.E629fs
LIHC	TCGA-DD-A3A0-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367068	37367068	Frame_Shift_Del	A	-	p.K1231fs
LIHC	TCGA-DD-A3A0-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367279	37367279	Frame_Shift_Del	A	-	p.E1301fs
LIHC	TCGA-DD-A3A0-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367549	37367549	Frame_Shift_Del	A	-	p.E1391fs
LIHC	TCGA-DD-A3A0-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367631	37367631	Frame_Shift_Del	T	-	p.S1418fs
LIHC	TCGA-DD-A3A0-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368650	37368650	Frame_Shift_Del	A	-	p.E1758fs
LIHC	TCGA-DD-A3A0-01	ITGA9	ENST00000264741.5	chr3	37785416:37785525:37791952:37792060:37818882:37819008,	37791953	37792060	37792040	37792040	Frame_Shift_Del	T	-	p.F841fs
LIHC	TCGA-DD-A3A0-01	ITGA9	ENST00000264741.5	chr3	37791952:37792060:37818882:37819008:37821392:37821512,	37818883	37819008	37818978	37818978	Frame_Shift_Del	T	-	p.A879fs
LIHC	TCGA-DD-A3A0-01	ITGA9	ENST00000264741.5	chr3	37826472:37826569:37845313:37845433:37860381:37860881,	37845314	37845433	37845344	37845344	Frame_Shift_Del	C	-	p.P974fs
LIHC	TCGA-DD-A3A0-01	PLCD1	ENST00000461445.1	chr3	38049764:38049858:38049948:38050649:38050762:38050922,	38049949	38050649	38050102	38050102	Frame_Shift_Del	C	-	p.G604fs
LIHC	TCGA-DD-A3A0-01	PLCD1	ENST00000463876.1,ENST00000334661.4	chr3	38049764:38049858:38049948:38050127:38050532:38050649,	38049949	38050127	38050102	38050102	Frame_Shift_Del	C	-	p.G604fs
LIHC	TCGA-DD-A3A0-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38125648:38125736:38126764:38126938:38127731:38127760,	38126765	38126938	38126778	38126778	Frame_Shift_Del	A	-	p.G425fs
LIHC	TCGA-DD-A3A0-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38125648:38125736:38126764:38126938:38127731:38127760,	38126765	38126938	38126901	38126901	Frame_Shift_Del	C	-	p.I466fs
LIHC	TCGA-DD-A3A0-01	MYD88	ENST00000421516.1,ENST00000417037.2	chr3	38181354:38181489:38181878:38182083:38182247:38182339,	38181879	38182083	38182053	38182053	Frame_Shift_Del	A	-	p.E226fs
LIHC	TCGA-DD-A3A0-01	MYD88	ENST00000424893.1	chr3	38181354:38181489:38181878:38182059:38182247:38182339,38180155:38180519:38181878:38182059:38182247:38182339,	38181879	38182059	38182053	38182053	Frame_Shift_Del	A	-	p.E226fs
LIHC	TCGA-DD-A3A0-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2	chr3	39166822:39167023:39167751:39167881:39169821:39169979,	39167752	39167881	39167788	39167788	Frame_Shift_Del	A	-	p.K485fs
LIHC	TCGA-DD-A3A0-01	CSRNP1	ENST00000514182.1,ENST00000273153.5	chr3	39185457:39185535:39185627:39185942:39186487:39186747,	39185628	39185942	39185855	39185855	Frame_Shift_Del	C	-	p.A185fs
LIHC	TCGA-DD-A3A0-01	MYRIP	ENST00000302541.6,ENST00000396217.3,ENST00000539167.1,ENST00000459828.1,ENST00000458441.1,ENST00000444716.1	chr3	40251344:40251584:40275349:40275544:40285936:40286098,	40275350	40275544	40275444	40275444	Frame_Shift_Del	G	-	p.W667fs
LIHC	TCGA-DD-A3A0-01	MYRIP	ENST00000458292.1	chr3	40251344:40251584:40275386:40275544:40285936:40286098,	40275387	40275544	40275444	40275444	Frame_Shift_Del	G	-	p.W667fs
LIHC	TCGA-DD-A3A0-01	ULK4	ENST00000301831.4	chr3	41290979:41291065:41439569:41439755:41496987:41497086,	41439570	41439755	41439607	41439607	Frame_Shift_Del	T	-	p.K1214fs
LIHC	TCGA-DD-A3A0-01	ULK4	ENST00000301831.4,ENST00000481226.1,ENST00000420927.1	chr3	41949411:41949433:41952808:41952878:41953032:41953151,	41952809	41952878	41952875	41952875	Frame_Shift_Del	T	-	p.N340fs
LIHC	TCGA-DD-A3A0-01	VIPR1	ENST00000543411.1,ENST00000433647.1,ENST00000438259.2,ENST00000443646.1,ENST00000325123.4,ENST00000439910.1	chr3	42573733:42573825:42576466:42576596:42576834:42576876,	42576467	42576596	42576497	42576497	Frame_Shift_Del	C	-	p.I306fs
LIHC	TCGA-DD-A3A0-01	SEC22C	ENST00000264454.3,ENST00000456515.1,ENST00000450981.1,ENST00000423701.2,ENST00000273156.7,ENST00000417572.1	chr3	42602706:42602788:42605014:42605178:42608235:42608328,42602706:42602788:42605014:42605178:42610356:42610565,	42605015	42605178	42605050	42605050	Frame_Shift_Del	C	-	p.G104fs
LIHC	TCGA-DD-A3A0-01	SEC22C	ENST00000264454.3,ENST00000423701.2,ENST00000273156.7	chr3	42605100:42605178:42610356:42610565:42623337:42623393,	42610357	42610565	42610521	42610521	Frame_Shift_Del	A	-	p.F6fs
LIHC	TCGA-DD-A3A0-01	CCDC13	ENST00000310232.6	chr3	42754653:42754808:42771958:42772081:42774378:42774414,	42771959	42772081	42772067	42772067	Frame_Shift_Del	G	-	p.P537fs
LIHC	TCGA-DD-A3A0-01	SNRK	ENST00000429705.2	chr3	43328077:43328167:43344589:43345284:43373660:43373802,	43344590	43345284	43344761	43344761	Frame_Shift_Del	G	-	p.L22fs
LIHC	TCGA-DD-A3A0-01	ANO10	ENST00000350459.4,ENST00000451430.2,ENST00000448045.1,ENST00000396091.3,ENST00000292246.3	chr3	43408380:43408466:43474102:43474219:43591211:43591340,	43474103	43474219	43474148	43474148	Frame_Shift_Del	T	-	p.K623fs
LIHC	TCGA-DD-A3A0-01	ANO10	ENST00000414522.2,ENST00000350459.4,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43596769:43596961:43602711:43602894:43607144:43607219,	43602712	43602894	43602819	43602819	Frame_Shift_Del	T	-	p.R457fs
LIHC	TCGA-DD-A3A0-01	TCAIM	ENST00000342649.4,ENST00000412611.2,ENST00000417768.1,ENST00000417237.1	chr3	44409023:44409200:44434346:44434469:44437891:44437989,	44434347	44434469	44434381	44434381	Frame_Shift_Del	A	-	p.K204fs
LIHC	TCGA-DD-A3A0-01	TCAIM	ENST00000342649.4,ENST00000431657.1,ENST00000412611.2,ENST00000417768.1,ENST00000417237.1	chr3	44434346:44434469:44437891:44437989:44438234:44438326,	44437892	44437989	44437906	44437906	Frame_Shift_Del	G	-	p.W237fs
LIHC	TCGA-DD-A3A0-01	KIF15	ENST00000438321.1,ENST00000425755.1,ENST00000326047.4,ENST00000453693.1	chr3	44868950:44869020:44869705:44869792:44871462:44871567,	44869706	44869792	44869749	44869749	Frame_Shift_Del	A	-	p.E967fs
LIHC	TCGA-DD-A3A0-01	SLC6A20	ENST00000456124.2,ENST00000358525.4	chr3	45821500:45821592:45823574:45823715:45837790:45837852,	45823575	45823715	45823639	45823639	Frame_Shift_Del	C	-	p.G66fs
LIHC	TCGA-DD-A3A0-01	TDGF1	ENST00000542931.1,ENST00000296145.5	chr3	46621228:46621343:46621440:46621550:46622621:46623950,	46621441	46621550	46621457	46621457	Frame_Shift_Del	C	-	p.P119fs
LIHC	TCGA-DD-A3A0-01	ALS2CL	ENST00000434140.1,ENST00000415953.1,ENST00000318962.4,ENST00000431015.1,ENST00000423707.1,ENST00000450172.1	chr3	46727797:46727929:46728472:46728638:46729108:46729174,	46728473	46728638	46728529	46728529	Frame_Shift_Del	G	-	p.H161fs
LIHC	TCGA-DD-A3A0-01	NBEAL2	ENST00000292309.5,ENST00000383740.2,ENST00000450053.3	chr3	47032708:47032794:47032895:47033178:47033329:47033436,	47032896	47033178	47032954	47032954	Frame_Shift_Del	G	-	p.R234fs
LIHC	TCGA-DD-A3A0-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143010	47143010	Frame_Shift_Del	A	-	p.F1651fs
LIHC	TCGA-DD-A3A0-01	SETD2	ENST00000445387.1,ENST00000409792.3	chr3	47144835:47144913:47147486:47147610:47155365:47155494,	47147487	47147610	47147524	47147524	Frame_Shift_Del	T	-	p.N1601fs
LIHC	TCGA-DD-A3A0-01	KIF9	ENST00000452770.2,ENST00000425853.1	chr3	47316814:47316980:47318771:47318869:47323984:47324027,47316814:47316980:47318771:47318869:47323629:47323688,	47318772	47318869	47318774	47318774	Frame_Shift_Del	T	-	p.R31fs
LIHC	TCGA-DD-A3A0-01	KLHL18	ENST00000455924.2,ENST00000442272.1	chr3	47324448:47324584:47364057:47364198:47371440:47371639,	47364058	47364198	47364136	47364136	Frame_Shift_Del	G	-	p.M113fs
LIHC	TCGA-DD-A3A0-01	PTPN23	ENST00000431726.1	chr3	47422559:47422670:47437632:47437707:47446141:47446269,47422559:47422670:47437632:47437707:47446494:47446571,	47437633	47437707	47437659	47437659	Frame_Shift_Del	C	-	p.N37fs
LIHC	TCGA-DD-A3A0-01	SCAP	ENST00000265565.5	chr3	47458611:47458697:47458793:47459316:47459623:47459739,	47458794	47459316	47459120	47459120	Frame_Shift_Del	A	-	p.S882fs
LIHC	TCGA-DD-A3A0-01	SCAP	ENST00000320017.6,ENST00000441517.2,ENST00000545718.1	chr3	47458611:47458697:47458793:47459313:47459623:47459739,	47458794	47459313	47459120	47459120	Frame_Shift_Del	A	-	p.S882fs
LIHC	TCGA-DD-A3A0-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618526	47618526	Frame_Shift_Del	C	-	p.G330fs
LIHC	TCGA-DD-A3A0-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618779	47618779	Frame_Shift_Del	G	-	p.P246fs
LIHC	TCGA-DD-A3A0-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47702783:47702945:47703823:47704082:47712147:47712207,	47703824	47704082	47703877	47703877	Frame_Shift_Del	A	-	p.L702fs
LIHC	TCGA-DD-A3A0-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47777523:47777616:47787397:47787483:47814306:47814426,47779518:47779600:47787397:47787483:47814306:47814426,	47787398	47787483	47787410	47787410	Frame_Shift_Del	T	-	p.N130fs
LIHC	TCGA-DD-A3A0-01	SMARCC1	ENST00000454240.1	chr3	47787397:47787483:47814306:47814426:47823092:47823371,	47814307	47814426	47814343	47814343	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-DD-A3A0-01	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1,ENST00000474183.1	chr3	47889958:47890040:47890113:47890307:47890409:47890486,	47890114	47890307	47890246	47890246	Frame_Shift_Del	T	-	p.V864fs
LIHC	TCGA-DD-A3A0-01	MAP4	ENST00000426837.2	chr3	47918906:47919013:47950527:47953911:47956306:47956429,	47950528	47953911	47950691	47950691	Frame_Shift_Del	T	-	p.K1757fs
LIHC	TCGA-DD-A3A0-01	MAP4	ENST00000426837.2	chr3	47918906:47919013:47950527:47953911:47956306:47956429,	47950528	47953911	47951520	47951520	Frame_Shift_Del	T	-	p.N1481fs
LIHC	TCGA-DD-A3A0-01	MAP4	ENST00000360240.6,ENST00000395734.3	chr3	47918906:47919013:47956306:47956429:47957440:47958031,	47956307	47956429	47956365	47956365	Frame_Shift_Del	T	-	p.K664fs
LIHC	TCGA-DD-A3A0-01	MAP4	ENST00000439356.1,ENST00000360240.6,ENST00000395734.3	chr3	48019354:48019423:48040127:48040369:48130262:48130314,	48040128	48040369	48040156	48040156	Frame_Shift_Del	T	-	p.K65fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000485535.1,ENST00000448774.2,ENST00000456774.1,ENST00000358536.4	chr3	48451863:48451967:48452276:48452445:48453271:48453376,	48452277	48452445	48452307	48452307	Frame_Shift_Del	G	-	p.Q1796fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000449094.1,ENST00000456774.1,ENST00000358536.4	chr3	48457439:48457576:48457754:48457860:48459319:48459471,	48457755	48457860	48457795	48457795	Frame_Shift_Del	C	-	p.G1147fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000449094.1,ENST00000456774.1,ENST00000358536.4	chr3	48457439:48457576:48457754:48457860:48459319:48459471,	48457755	48457860	48457832	48457832	Frame_Shift_Del	C	-	p.E1136fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000449094.1,ENST00000456774.1,ENST00000358536.4	chr3	48460325:48460448:48460652:48460775:48460985:48461083,	48460653	48460775	48460743	48460743	Frame_Shift_Del	G	-	p.P914fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000449094.1	chr3	48460652:48460775:48460985:48461083:48462073:48462182,	48460986	48461083	48461077	48461077	Frame_Shift_Del	C	-	p.G873fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461077	48461077	Frame_Shift_Del	C	-	p.G873fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461290	48461290	Frame_Shift_Del	G	-	p.P802fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461490	48461490	Frame_Shift_Del	G	-	p.P735fs
LIHC	TCGA-DD-A3A0-01	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461513	48461513	Frame_Shift_Del	C	-	p.A728fs
LIHC	TCGA-DD-A3A0-01	PFKFB4	ENST00000496767.1,ENST00000490115.1,ENST00000468162.1	chr3	48577129:48577204:48581012:48581079:48587296:48587328,48577129:48577204:48581012:48581079:48585964:48586092,	48581013	48581079	48581023	48581023	Frame_Shift_Del	C	-	p.G123fs
LIHC	TCGA-DD-A3A0-01	COL7A1	ENST00000459756.1,ENST00000454817.1,ENST00000487017.1,ENST00000328333.8,ENST00000467985.1	chr3	48605931:48605967:48606216:48606288:48606807:48606879,	48606217	48606288	48606260	48606260	Frame_Shift_Del	C	-	p.G2572fs
LIHC	TCGA-DD-A3A0-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48609935:48609971:48610103:48610172:48610294:48610375,	48610104	48610172	48610137	48610137	Frame_Shift_Del	T	-	p.K2289fs
LIHC	TCGA-DD-A3A0-01	COL7A1	ENST00000454817.1,ENST00000328333.8	chr3	48630788:48630882:48630969:48631129:48631800:48631981,	48630970	48631129	48631052	48631052	Frame_Shift_Del	C	-	p.G115fs
LIHC	TCGA-DD-A3A0-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48680986:48681110:48681648:48681728:48682148:48682261,	48681649	48681728	48681711	48681711	Frame_Shift_Del	A	-	p.F2706fs
LIHC	TCGA-DD-A3A0-01	IP6K2	ENST00000432678.2	chr3	48731607:48731673:48731891:48731958:48732522:48732851,	48731892	48731958	48731909	48731909	Frame_Shift_Del	C	-	p.G84fs
LIHC	TCGA-DD-A3A0-01	PRKAR2A	ENST00000265563.8,ENST00000437821.2,ENST00000296446.8,ENST00000454963.1	chr3	48802680:48802782:48810387:48810541:48820418:48820525,	48810388	48810541	48810501	48810501	Frame_Shift_Del	G	-	p.R195fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49049902	49049902	Frame_Shift_Del	G	-	p.W342fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49049902	49049902	Frame_Shift_Del	G	-	p.W342fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49050468	49050468	Frame_Shift_Del	C	-	p.P532fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49050468	49050468	Frame_Shift_Del	C	-	p.P532fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49050519	49050519	Frame_Shift_Del	T	-	p.F548fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49050519	49050519	Frame_Shift_Del	T	-	p.F548fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49051112	49051112	Frame_Shift_Del	G	-	p.L745fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000415265.2	chr3	49044835:49044964:49050723:49051549:49051642:49051726,	49050724	49051549	49051112	49051112	Frame_Shift_Del	G	-	p.L745fs
LIHC	TCGA-DD-A3A0-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49051112	49051112	Frame_Shift_Del	G	-	p.L745fs
LIHC	TCGA-DD-A3A0-01	QRICH1	ENST00000479449.1	chr3	49084501:49084679:49094294:49094476:49095224:49095308,	49094295	49094476	49094309	49094309	Frame_Shift_Del	G	-	p.Q442fs
LIHC	TCGA-DD-A3A0-01	QRICH1	ENST00000357496.2,ENST00000424300.1,ENST00000395443.2	chr3	49084501:49084679:49094294:49095323:49114141:49114471,	49094295	49095323	49094309	49094309	Frame_Shift_Del	G	-	p.Q442fs
LIHC	TCGA-DD-A3A0-01	QRICH1	ENST00000357496.2,ENST00000424300.1,ENST00000395443.2	chr3	49084501:49084679:49094294:49095323:49114141:49114471,	49094295	49095323	49094672	49094672	Frame_Shift_Del	C	-	p.D321fs
LIHC	TCGA-DD-A3A0-01	USP19	ENST00000398896.1,ENST00000398888.2	chr3	49154166:49154376:49154869:49155003:49155089:49155144,	49154870	49155003	49154901	49154901	Frame_Shift_Del	T	-	p.K192fs
LIHC	TCGA-DD-A3A0-01	LAMB2	ENST00000494831.1,ENST00000418109.1,ENST00000305544.4	chr3	49168811:49168875:49168967:49169156:49169548:49169587,	49168968	49169156	49169047	49169047	Frame_Shift_Del	G	-	p.P190fs
LIHC	TCGA-DD-A3A0-01	C3orf62	ENST00000436325.1	chr3	49311481:49311573:49313859:49314274:49314618:49314652,	49313860	49314274	49313871	49313871	Frame_Shift_Del	T	-	p.K145fs
LIHC	TCGA-DD-A3A0-01	USP4	ENST00000486549.1	chr3	49338027:49338124:49339816:49339975:49343147:49343321,49335984:49336068:49339816:49339975:49343147:49343321,	49339817	49339975	49339870	49339870	Frame_Shift_Del	C	-	p.V365fs
LIHC	TCGA-DD-A3A0-01	APEH	ENST00000447541.1	chr3	49713126:49713220:49713323:49713399:49713810:49713939,	49713324	49713399	49713375	49713375	Frame_Shift_Del	A	-	p.K140fs
LIHC	TCGA-DD-A3A0-01	APEH	ENST00000447541.1,ENST00000296456.5,ENST00000482301.1,ENST00000447436.1,ENST00000446089.1,ENST00000442186.1,ENST00000438011.1	chr3	49714209:49714250:49714335:49714457:49715005:49715066,	49714336	49714457	49714427	49714427	Frame_Shift_Del	C	-	p.I323fs
LIHC	TCGA-DD-A3A0-01	MST1	ENST00000449682.2,ENST00000494828.2,ENST00000383728.3	chr3	49724581:49724718:49724796:49724911:49724988:49725101,	49724797	49724911	49724866	49724866	Frame_Shift_Del	C	-	p.G134fs
LIHC	TCGA-DD-A3A0-01	UBA7	ENST00000333486.3,ENST00000488536.1	chr3	49845818:49845901:49846408:49846592:49846822:49846897,	49846409	49846592	49846455	49846455	Frame_Shift_Del	G	-	p.P767fs
LIHC	TCGA-DD-A3A0-01	MST1R	ENST00000411578.2,ENST00000296474.3,ENST00000344206.4	chr3	49924597:49924995:49927356:49927493:49927917:49928083,	49927357	49927493	49927447	49927447	Frame_Shift_Del	G	-	p.P1287fs
LIHC	TCGA-DD-A3A0-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005050	50005050	Frame_Shift_Del	T	-	p.P64fs
LIHC	TCGA-DD-A3A0-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005050	50005050	Frame_Shift_Del	T	-	p.P64fs
LIHC	TCGA-DD-A3A0-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50006149	50006149	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-DD-A3A0-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50006149	50006149	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-DD-A3A0-01	RBM5	ENST00000395174.2,ENST00000347869.3,ENST00000474818.1,ENST00000496179.1	chr3	50142981:50143142:50144199:50144297:50144914:50145002,	50144200	50144297	50144260	50144260	Frame_Shift_Del	A	-	p.K306fs
LIHC	TCGA-DD-A3A0-01	SEMA3F	ENST00000002829.3	chr3	50212528:50212621:50214200:50214294:50219716:50219836,	50214201	50214294	50214267	50214267	Frame_Shift_Del	A	-	p.K206fs
LIHC	TCGA-DD-A3A0-01	IFRD2	ENST00000483071.1,ENST00000429673.2,ENST00000336089.4,ENST00000436390.1,ENST00000474556.1,ENST00000417626.2	chr3	50326685:50326787:50326877:50327059:50327142:50327193,50326685:50326791:50326877:50327059:50327142:50327193,	50326878	50327059	50326998	50326998	Frame_Shift_Del	C	-	p.G220fs
LIHC	TCGA-DD-A3A0-01	IFRD2	ENST00000414734.1	chr3	50326685:50326791:50326877:50327193:50327359:50327517,	50326878	50327193	50326998	50326998	Frame_Shift_Del	C	-	p.G220fs
LIHC	TCGA-DD-A3A0-01	HYAL3	ENST00000415204.1,ENST00000336307.1	chr3	50330475:50330946:50331062:50331152:50332139:50332284,	50331063	50331152	50331086	50331086	Frame_Shift_Del	C	-	p.D321fs
LIHC	TCGA-DD-A3A0-01	HYAL1	ENST00000395143.2	chr3	50337912:50338231:50339487:50340411:50340896:50341004,	50339488	50340411	50340066	50340066	Frame_Shift_Del	G	-	p.R108fs
LIHC	TCGA-DD-A3A0-01	ZMYND10	ENST00000442887.1,ENST00000231749.3	chr3	50379467:50379571:50379827:50380000:50380348:50380449,	50379828	50380000	50379954	50379954	Frame_Shift_Del	G	-	p.P249fs
LIHC	TCGA-DD-A3A0-01	NPRL2	ENST00000232501.3,ENST00000476064.1,ENST00000487632.1,ENST00000461020.1,ENST00000479512.1	chr3	50385189:50385332:50385554:50385672:50385747:50385841,	50385555	50385672	50385649	50385649	Frame_Shift_Del	C	-	p.D280fs
LIHC	TCGA-DD-A3A0-01	CACNA2D2	ENST00000423994.2,ENST00000435965.1,ENST00000360963.3,ENST00000395083.1,ENST00000424201.2,ENST00000266039.3,ENST00000479441.1,ENST00000429770.1	chr3	50413393:50413465:50413544:50413619:50414897:50414972,	50413545	50413619	50413547	50413547	Frame_Shift_Del	G	-	p.Q567fs
LIHC	TCGA-DD-A3A0-01	CACNA2D2	ENST00000423994.2,ENST00000435965.1,ENST00000360963.3,ENST00000395083.1,ENST00000424201.2,ENST00000266039.3,ENST00000479441.1,ENST00000429770.1	chr3	50417155:50417255:50417398:50417449:50418178:50418236,	50417399	50417449	50417436	50417436	Frame_Shift_Del	C	-	p.A286fs
LIHC	TCGA-DD-A3A0-01	MAPKAPK3	ENST00000357955.2,ENST00000446044.1,ENST00000430409.1	chr3	50655140:50655215:50677796:50677936:50679137:50679202,	50677797	50677936	50677859	50677859	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A3A0-01	PCBP4	ENST00000471622.1,ENST00000498822.1,ENST00000355852.2,ENST00000461554.1,ENST00000497390.1,ENST00000322099.7	chr3	51993592:51993667:51993910:51994039:51994204:51994336,	51993911	51994039	51994032	51994032	Frame_Shift_Del	C	-	p.G132fs
LIHC	TCGA-DD-A3A0-01	PPM1M	ENST00000296487.4,ENST00000467471.1,ENST00000489606.1,ENST00000457351.2,ENST00000323588.4	chr3	52280710:52280828:52280989:52281244:52281697:52281810,	52280990	52281244	52281136	52281136	Frame_Shift_Del	C	-	p.H2fs
LIHC	TCGA-DD-A3A0-01	GLYCTK	ENST00000436784.2,ENST00000473032.1,ENST00000354773.4,ENST00000486393.1,ENST00000305690.8	chr3	52321871:52321892:52324319:52324735:52324975:52325127,	52324320	52324735	52324700	52324700	Frame_Shift_Del	G	-	p.K114fs
LIHC	TCGA-DD-A3A0-01	GLYCTK	ENST00000461183.1,ENST00000436784.2,ENST00000471180.1,ENST00000305690.8	chr3	52324975:52325127:52325762:52325938:52326275:52326320,	52325763	52325938	52325863	52325863	Frame_Shift_Del	G	-	p.Q210fs
LIHC	TCGA-DD-A3A0-01	GLYCTK	ENST00000486393.1	chr3	52324975:52325127:52325760:52325938:52326275:52326320,	52325761	52325938	52325863	52325863	Frame_Shift_Del	G	-	p.Q210fs
LIHC	TCGA-DD-A3A0-01	GLYCTK	ENST00000489173.1	chr3	52325762:52325938:52326275:52327190:52327322:52327485,	52326276	52327190	52326593	52326593	Frame_Shift_Del	A	-	p.V341fs
LIHC	TCGA-DD-A3A0-01	GLYCTK	ENST00000489173.1	chr3	52325762:52325938:52326275:52327190:52327322:52327485,	52326276	52327190	52326906	52326906	Frame_Shift_Del	T	-	p.F446fs
LIHC	TCGA-DD-A3A0-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52379510:52379722:52380487:52380786:52381839:52381990,	52380488	52380786	52380594	52380594	Frame_Shift_Del	G	-	p.W588fs
LIHC	TCGA-DD-A3A0-01	DNAH1	ENST00000486752.1,ENST00000420323.2	chr3	52409255:52409429:52409970:52410009:52412617:52412796,	52409971	52410009	52409986	52409986	Frame_Shift_Del	A	-	p.E2392fs
LIHC	TCGA-DD-A3A0-01	DNAH1	ENST00000486752.1,ENST00000420323.2	chr3	52409970:52410009:52412617:52412796:52413920:52414151,	52412618	52412796	52412620	52412620	Frame_Shift_Del	G	-	p.G2401fs
LIHC	TCGA-DD-A3A0-01	BAP1	ENST00000460680.1	chr3	52440268:52440392:52440844:52440923:52441189:52441332,	52440845	52440923	52440912	52440912	Frame_Shift_Del	C	-	p.E198fs
LIHC	TCGA-DD-A3A0-01	PHF7	ENST00000498509.2,ENST00000347025.2,ENST00000472337.1,ENST00000461861.1,ENST00000327906.3	chr3	52453935:52453950:52454326:52454451:52454918:52455011,	52454327	52454451	52454435	52454435	Frame_Shift_Del	T	-	p.F134fs
LIHC	TCGA-DD-A3A0-01	PHF7	ENST00000498509.2	chr3	52455031:52455078:52455663:52456897:52457106:52457299,	52455664	52456897	52456306	52456306	Frame_Shift_Del	C	-	p.A250fs
LIHC	TCGA-DD-A3A0-01	PHF7	ENST00000461861.1,ENST00000327906.3	chr3	52455663:52455770:52456237:52456354:52456775:52456852,	52456238	52456354	52456306	52456306	Frame_Shift_Del	C	-	p.A250fs
LIHC	TCGA-DD-A3A0-01	NISCH	ENST00000345716.4,ENST00000488380.1,ENST00000479054.1,ENST00000420808.2	chr3	52491858:52491942:52492677:52492860:52504874:52504923,	52492678	52492860	52492820	52492820	Frame_Shift_Del	C	-	p.T107fs
LIHC	TCGA-DD-A3A0-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543930	Frame_Shift_Del	G	-	p.G799fs
LIHC	TCGA-DD-A3A0-01	STAB1	ENST00000321725.6	chr3	52549438:52549522:52550058:52550254:52550371:52550467,	52550059	52550254	52550119	52550119	Frame_Shift_Del	G	-	p.G1338fs
LIHC	TCGA-DD-A3A0-01	NT5DC2	ENST00000307092.4,ENST00000307076.4,ENST00000422318.2,ENST00000492555.1,ENST00000478091.1,ENST00000466112.1,ENST00000459839.1,ENST00000463947.1	chr3	52559075:52559119:52559224:52559311:52561309:52561382,	52559225	52559311	52559300	52559300	Frame_Shift_Del	A	-	p.F340fs
LIHC	TCGA-DD-A3A0-01	NT5DC2	ENST00000307092.4,ENST00000307076.4,ENST00000422318.2,ENST00000486792.1,ENST00000459839.1	chr3	52562207:52562327:52562461:52562555:52562652:52562708,	52562462	52562555	52562508	52562508	Frame_Shift_Del	C	-	p.G162fs
LIHC	TCGA-DD-A3A0-01	GNL3	ENST00000496254.1,ENST00000492349.1,ENST00000479230.1,ENST00000394799.2,ENST00000418458.1,ENST00000474423.1,ENST00000468146.1,ENST00000462550.1	chr3	52720784:52720843:52721261:52721399:52721517:52721631,	52721262	52721399	52721352	52721352	Frame_Shift_Del	C	-	p.P43fs
LIHC	TCGA-DD-A3A0-01	GNL3	ENST00000496254.1	chr3	52723089:52723222:52724607:52725087:52725557:52725645,	52724608	52725087	52725020	52725020	Frame_Shift_Del	G	-	p.E226fs
LIHC	TCGA-DD-A3A0-01	GNL3	ENST00000496254.1,ENST00000394799.2,ENST00000418458.1	chr3	52726887:52727062:52727202:52727345:52727423:52727560,	52727203	52727345	52727248	52727248	Frame_Shift_Del	T	-	p.F353fs
LIHC	TCGA-DD-A3A0-01	NEK4	ENST00000233027.5,ENST00000383721.4,ENST00000535191.1,ENST00000461689.1	chr3	52794810:52794952:52797485:52797640:52799902:52800010,	52797486	52797640	52797518	52797518	Frame_Shift_Del	C	-	p.R263fs
LIHC	TCGA-DD-A3A0-01	ITIH1	ENST00000428133.1,ENST00000405128.3,ENST00000540715.1,ENST00000542827.1,ENST00000273283.2,ENST00000537050.1	chr3	52823668:52823870:52824764:52824937:52825532:52825615,	52824765	52824937	52824855	52824855	Frame_Shift_Del	G	-	p.K804fs
LIHC	TCGA-DD-A3A0-01	SFMBT1	ENST00000358080.2,ENST00000394752.3,ENST00000394750.1	chr3	52938627:52939292:52940128:52940257:52941084:52941330,	52940129	52940257	52940208	52940208	Frame_Shift_Del	A	-	p.L794fs
LIHC	TCGA-DD-A3A0-01	TKT	ENST00000462138.1,ENST00000423525.2,ENST00000296289.6,ENST00000423516.1,ENST00000450814.2	chr3	53264472:53264637:53265372:53265566:53267171:53267290,	53265373	53265566	53265564	53265564	Frame_Shift_Del	C	-	p.V251fs
LIHC	TCGA-DD-A3A0-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1,ENST00000540742.1	chr3	53810629:53810757:53810886:53810983:53814052:53814155,	53810887	53810983	53810896	53810896	Frame_Shift_Del	A	-	p.I1520fs
LIHC	TCGA-DD-A3A0-01	IL17RB	ENST00000475124.1,ENST00000288167.3	chr3	53886897:53887024:53889320:53889368:53890870:53891004,	53889321	53889368	53889347	53889347	Frame_Shift_Del	A	-	p.K172fs
LIHC	TCGA-DD-A3A0-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1,ENST00000341455.6	chr3	56593596:56593622:56597711:56598153:56600621:56600734,	56597712	56598153	56598124	56598124	Frame_Shift_Del	C	-	p.S172fs
LIHC	TCGA-DD-A3A0-01	CCDC66	ENST00000494672.1,ENST00000482673.1,ENST00000471681.1	chr3	56600978:56601081:56605208:56605330:56626997:56627089,56600978:56601081:56605208:56605330:56606364:56606456,	56605209	56605330	56605302	56605302	Frame_Shift_Del	A	-	p.E303fs
LIHC	TCGA-DD-A3A0-01	CCDC66	ENST00000422222.1,ENST00000436465.2,ENST00000484623.1,ENST00000394672.3,ENST00000326595.7,ENST00000468108.1,ENST00000341455.6	chr3	56627739:56627769:56627971:56628056:56647616:56647778,	56627972	56628056	56628037	56628037	Frame_Shift_Del	A	-	p.Q462fs
LIHC	TCGA-DD-A3A0-01	ARHGEF3	ENST00000413728.2,ENST00000338458.4,ENST00000465659.1,ENST00000496106.1,ENST00000296315.3,ENST00000497267.1	chr3	56763048:56763650:56766265:56766452:56771212:56771383,	56766266	56766452	56766287	56766287	Frame_Shift_Del	C	-	p.A409fs
LIHC	TCGA-DD-A3A0-01	APPL1	ENST00000444459.1,ENST00000482800.1,ENST00000288266.3	chr3	57271519:57271579:57272072:57272144:57274492:57274580,	57272073	57272144	57272129	57272129	Frame_Shift_Del	A	-	p.S90fs
LIHC	TCGA-DD-A3A0-01	DNAH12	ENST00000495027.1,ENST00000351747.2	chr3	57440501:57440621:57443447:57443730:57443825:57443947,	57443448	57443730	57443575	57443575	Frame_Shift_Del	C	-	p.G1047fs
LIHC	TCGA-DD-A3A0-01	DENND6A	ENST00000311128.5	chr3	57649362:57649443:57651849:57651962:57657982:57658025,	57651850	57651962	57651934	57651934	Frame_Shift_Del	A	-	p.F116fs
LIHC	TCGA-DD-A3A0-01	SLMAP	ENST00000417128.1,ENST00000295952.3,ENST00000428312.1,ENST00000442599.2,ENST00000449503.2,ENST00000494088.1,ENST00000416658.1,ENST00000295951.3,ENST00000495364.1	chr3	57898884:57899002:57902632:57902804:57908615:57908750,	57902633	57902804	57902753	57902753	Frame_Shift_Del	A	-	p.L719fs
LIHC	TCGA-DD-A3A0-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58067355:58067503:58080562:58080681:58081867:58081945,	58080563	58080681	58080673	58080673	Frame_Shift_Del	A	-	p.K300fs
LIHC	TCGA-DD-A3A0-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58148880:58149057:58154166:58154385:58155316:58155520,	58154167	58154385	58154250	58154250	Frame_Shift_Del	A	-	p.K2428fs
LIHC	TCGA-DD-A3A0-01	DNASE1L3	ENST00000394549.2,ENST00000483681.1,ENST00000461914.3,ENST00000318316.3	chr3	58186796:58186836:58190495:58190608:58193944:58194033,58186796:58186836:58190495:58190608:58191197:58191278,	58190496	58190608	58190502	58190502	Frame_Shift_Del	G	-	p.H143fs
LIHC	TCGA-DD-A3A0-01	RPP14	ENST00000466547.1,ENST00000476007.1,ENST00000295959.5,ENST00000463550.1,ENST00000461393.1,ENST00000445193.3,ENST00000481972.1	chr3	58296233:58296318:58302241:58302318:58302641:58302720,	58302242	58302318	58302259	58302259	Frame_Shift_Del	T	-	p.P60fs
LIHC	TCGA-DD-A3A0-01	RPP14	ENST00000466547.1,ENST00000476007.1,ENST00000295959.5,ENST00000463550.1,ENST00000461393.1,ENST00000445193.3,ENST00000481972.1	chr3	58296233:58296318:58302241:58302318:58302641:58302720,	58302242	58302318	58302290	58302290	Frame_Shift_Del	T	-	p.L71fs
LIHC	TCGA-DD-A3A0-01	ACOX2	ENST00000492530.1,ENST00000466810.1,ENST00000459701.2,ENST00000302819.5	chr3	58517047:58517093:58517419:58517539:58519171:58519279,	58517420	58517539	58517450	58517450	Frame_Shift_Del	G	-	p.R225fs
LIHC	TCGA-DD-A3A0-01	FAM3D	ENST00000482623.1,ENST00000483787.1,ENST00000489857.1,ENST00000358781.2	chr3	58625853:58625904:58629388:58629447:58631235:58631351,	58629389	58629447	58629427	58629427	Frame_Shift_Del	T	-	p.N96fs
LIHC	TCGA-DD-A3A0-01	C3orf67	ENST00000295966.7	chr3	58792120:58792182:58817411:58817615:58834757:58834952,58792120:58792182:58817411:58817615:58849283:58849618,	58817412	58817615	58817533	58817533	Frame_Shift_Del	T	-	p.N434fs
LIHC	TCGA-DD-A3A0-01	PTPRG	ENST00000474889.1,ENST00000295874.10	chr3	61547584:61548046:61734551:61734656:61975298:61975478,	61734552	61734656	61734637	61734637	Frame_Shift_Del	C	-	p.D57fs
LIHC	TCGA-DD-A3A0-01	PTPRG	ENST00000474889.1,ENST00000295874.10	chr3	62142740:62142898:62153644:62153837:62177142:62177327,	62153645	62153837	62153666	62153666	Frame_Shift_Del	T	-	p.F288fs
LIHC	TCGA-DD-A3A0-01	PTPRG	ENST00000295874.10	chr3	62188846:62189624:62204524:62204657:62229480:62229572,	62204525	62204657	62204528	62204528	Frame_Shift_Del	A	-	p.E720fs
LIHC	TCGA-DD-A3A0-01	PTPRG	ENST00000475012.1,ENST00000474889.1,ENST00000295874.10	chr3	62267237:62267384:62268401:62268544:62278095:62278231,	62268402	62268544	62268502	62268502	Frame_Shift_Del	A	-	p.E1339fs
LIHC	TCGA-DD-A3A0-01	CADPS	ENST00000283269.9,ENST00000383710.4,ENST00000357948.3,ENST00000473635.1	chr3	62423814:62423886:62431439:62431472:62451041:62451125,	62431440	62431472	62431455	62431455	Frame_Shift_Del	T	-	p.K1218fs
LIHC	TCGA-DD-A3A0-01	CADPS	ENST00000357948.3	chr3	62477964:62478121:62484836:62484943:62501733:62501857,	62484837	62484943	62484882	62484882	Frame_Shift_Del	T	-	p.E887fs
LIHC	TCGA-DD-A3A0-01	SYNPR	ENST00000478300.1,ENST00000295894.5,ENST00000460711.1,ENST00000450542.2	chr3	63542218:63542417:63594800:63594992:63600899:63601212,	63594801	63594992	63594939	63594939	Frame_Shift_Del	A	-	p.N183fs
LIHC	TCGA-DD-A3A0-01	THOC7	ENST00000469584.1	chr3	63823667:63823738:63824047:63824175:63849447:63849475,	63824048	63824175	63824063	63824063	Frame_Shift_Del	T	-	p.I84fs
LIHC	TCGA-DD-A3A0-01	ATXN7	ENST00000487717.1,ENST00000474112.1,ENST00000484332.1,ENST00000538065.1,ENST00000295900.6,ENST00000398590.3	chr3	63965590:63965843:63967861:63968121:63968614:63968697,	63967862	63968121	63967899	63967899	Frame_Shift_Del	A	-	p.K264fs
LIHC	TCGA-DD-A3A0-01	ATXN7	ENST00000487717.1,ENST00000474112.1,ENST00000484332.1,ENST00000538065.1,ENST00000295900.6,ENST00000398590.3	chr3	63965590:63965843:63967861:63968121:63968614:63968697,	63967862	63968121	63967985	63967985	Frame_Shift_Del	C	-	p.C292fs
LIHC	TCGA-DD-A3A0-01	PSMD6	ENST00000480205.1,ENST00000492933.1,ENST00000497315.1,ENST00000476464.1,ENST00000475036.1,ENST00000482510.1,ENST00000295901.4,ENST00000394431.2	chr3	64004338:64004383:64004493:64004713:64004971:64005010,	64004494	64004713	64004514	64004514	Frame_Shift_Del	T	-	p.R286fs
LIHC	TCGA-DD-A3A0-01	ADAMTS9	ENST00000459780.1,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64641251:64641367:64641467:64641551:64644177:64644467,	64641468	64641551	64641514	64641514	Frame_Shift_Del	A	-	p.L336fs
LIHC	TCGA-DD-A3A0-01	SLC25A26	ENST00000536651.1,ENST00000336733.6,ENST00000464350.2	chr3	66286967:66287124:66293626:66293736:66312474:66312579,66271489:66271553:66293626:66293736:66312474:66312579,	66293627	66293736	66293635	66293635	Frame_Shift_Del	T	-	p.H14fs
LIHC	TCGA-DD-A3A0-01	SUCLG2	ENST00000307227.5,ENST00000492795.1,ENST00000493112.1	chr3	67548557:67548719:67559230:67559327:67568670:67568760,	67559231	67559327	67559283	67559283	Frame_Shift_Del	A	-	p.I235fs
LIHC	TCGA-DD-A3A0-01	TMF1	ENST00000543976.1,ENST00000398559.2	chr3	69077376:69077446:69078965:69079158:69082698:69082855,	69078966	69079158	69079066	69079066	Frame_Shift_Del	C	-	p.E835fs
LIHC	TCGA-DD-A3A0-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69087993:69088160:69088701:69088844:69091957:69092063,	69088702	69088844	69088741	69088741	Frame_Shift_Del	T	-	p.K599fs
LIHC	TCGA-DD-A3A0-01	FRMD4B	ENST00000459638.1,ENST00000460709.1,ENST00000473188.1,ENST00000398540.3,ENST00000473029.1,ENST00000470070.2,ENST00000542259.1	chr3	69336902:69336987:69351493:69351586:69360413:69360508,	69351494	69351586	69351550	69351550	Frame_Shift_Del	A	-	p.V66fs
LIHC	TCGA-DD-A3A0-01	FOXP1	ENST00000493089.1,ENST00000498215.1,ENST00000468577.1,ENST00000475937.1,ENST00000318789.4,ENST00000497355.1,ENST00000484350.1,ENST00000491238.1,ENST00000327590.4	chr3	71050122:71050210:71064699:71064804:71090478:71090683,	71064700	71064804	71064732	71064732	Frame_Shift_Del	T	-	p.E314fs
LIHC	TCGA-DD-A3A0-01	GXYLT2	ENST00000389617.4	chr3	72971354:72971486:73004248:73004500:73006379:73006503,	73004249	73004500	73004309	73004309	Frame_Shift_Del	C	-	p.P221fs
LIHC	TCGA-DD-A3A0-01	GXYLT2	ENST00000491839.1,ENST00000389617.4	chr3	73004365:73004500:73006379:73006503:73016697:73016870,	73006380	73006503	73006412	73006412	Frame_Shift_Del	G	-	p.E295fs
LIHC	TCGA-DD-A3A0-01	GXYLT2	ENST00000491839.1,ENST00000389617.4	chr3	73004365:73004500:73006379:73006503:73016697:73016870,	73006380	73006503	73006424	73006424	Frame_Shift_Del	C	-	p.Y299fs
LIHC	TCGA-DD-A3A0-01	VGLL3	ENST00000398399.2	chr3	86987118:86996217:87017739:87018273:87027675:87027793,	87017740	87018273	87017851	87017851	Frame_Shift_Del	G	-	p.Q276fs
LIHC	TCGA-DD-A3A0-01	ARL13B	ENST00000471138.1,ENST00000394222.3	chr3	93715406:93715528:93722502:93722752:93754174:93754280,93714721:93714788:93722502:93722752:93754174:93754280,	93722503	93722752	93722608	93722608	Frame_Shift_Del	G	-	p.R79fs
LIHC	TCGA-DD-A3A0-01	EPHA6	ENST00000389672.5,ENST00000502694.1,ENST00000514100.1,ENST00000508345.1,ENST00000442602.2	chr3	97251201:97251387:97311455:97311581:97329636:97329668,	97311456	97311581	97311548	97311548	Frame_Shift_Del	G	-	p.G829fs
LIHC	TCGA-DD-A3A0-01	ARL6	ENST00000335979.2,ENST00000463745.1,ENST00000493990.1,ENST00000394206.1	chr3	97506833:97506963:97510614:97510670:97516867:97517047,	97510615	97510670	97510630	97510630	Frame_Shift_Del	A	-	p.I165fs
LIHC	TCGA-DD-A3A0-01	CRYBG3	ENST00000182096.4	chr3	97631010:97631120:97634453:97634580:97652537:97652677,	97634454	97634580	97634541	97634541	Frame_Shift_Del	C	-	p.C786fs
LIHC	TCGA-DD-A3A0-01	ST3GAL6	ENST00000485145.1,ENST00000497621.1,ENST00000469105.1,ENST00000492254.1,ENST00000486334.2,ENST00000493953.1,ENST00000477899.1,ENST00000483910.1,ENST00000462152.1,ENST00000394162.1	chr3	98503788:98503884:98506879:98507066:98507169:98507246,	98506880	98507066	98506920	98506920	Frame_Shift_Del	G	-	p.G40fs
LIHC	TCGA-DD-A3A0-01	DCBLD2	ENST00000326840.6,ENST00000326857.9,ENST00000486004.1	chr3	98544177:98544210:98568304:98568442:98600383:98600611,	98568305	98568442	98568423	98568423	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-DD-A3A0-01	COL8A1	ENST00000261037.3,ENST00000452013.1,ENST00000273342.4	chr3	99463740:99463865:99509523:99509854:99513073:99513086,	99509524	99509854	99509683	99509683	Frame_Shift_Del	C	-	p.P53fs
LIHC	TCGA-DD-A3A0-01	TBC1D23	ENST00000344949.5,ENST00000394144.4	chr3	99979855:99979915:99998492:99998604:100000585:100000691,	99998493	99998604	99998593	99998593	Frame_Shift_Del	A	-	p.K52fs
LIHC	TCGA-DD-A3A0-01	TBC1D23	ENST00000471098.1,ENST00000344949.5,ENST00000486274.1,ENST00000394144.4,ENST00000485687.1	chr3	100000585:100000691:100002450:100002655:100009421:100009489,	100002451	100002655	100002490	100002490	Frame_Shift_Del	T	-	p.L105fs
LIHC	TCGA-DD-A3A0-01	NIT2	ENST00000465368.1	chr3	100059916:100060005:100064428:100065099:100067646:100067725,	100064429	100065099	100064480	100064480	Frame_Shift_Del	A	-	p.K130fs
LIHC	TCGA-DD-A3A0-01	NIT2	ENST00000480073.1,ENST00000497785.1,ENST00000394140.4	chr3	100059916:100060005:100064428:100064522:100065024:100065099,	100064429	100064522	100064480	100064480	Frame_Shift_Del	A	-	p.K130fs
LIHC	TCGA-DD-A3A0-01	TMEM45A	ENST00000449609.1,ENST00000462884.1,ENST00000403410.1	chr3	100238376:100238452:100274052:100274245:100275603:100275666,	100274053	100274245	100274058	100274058	Frame_Shift_Del	G	-	p.M17fs
LIHC	TCGA-DD-A3A0-01	TMEM45A	ENST00000449609.1,ENST00000323523.4,ENST00000403410.1	chr3	100274052:100274245:100275603:100275816:100277248:100277371,	100275604	100275816	100275720	100275720	Frame_Shift_Del	G	-	p.G119fs
LIHC	TCGA-DD-A3A0-01	TFG	ENST00000490574.1,ENST00000476228.1,ENST00000479672.1,ENST00000418917.2,ENST00000240851.4,ENST00000463568.1,ENST00000487505.1	chr3	100432486:100432713:100438818:100438902:100447555:100447672,	100438819	100438902	100438858	100438858	Frame_Shift_Del	C	-	p.S75fs
LIHC	TCGA-DD-A3A0-01	ABI3BP	ENST00000383691.4,ENST00000471901.1,ENST00000495591.1,ENST00000284322.5,ENST00000487012.1,ENST00000471714.1	chr3	100511534:100511612:100513766:100513847:100515252:100515312,	100513767	100513847	100513802	100513802	Frame_Shift_Del	G	-	p.P1295fs
LIHC	TCGA-DD-A3A0-01	PCNP	ENST00000469941.1	chr3	101298685:101298848:101304280:101304355:101311470:101311615,101298685:101298848:101304280:101304355:101309058:101309114,101293062:101293123:101304280:101304355:101309058:101309114,	101304281	101304355	101304337	101304337	Frame_Shift_Del	T	-	p.A112fs
LIHC	TCGA-DD-A3A0-01	RPL24	ENST00000495401.1	chr3	101399939:101400059:101401614:101401751:101404661:101404733,	101401615	101401751	101401733	101401733	Frame_Shift_Del	T	-	p.R71fs
LIHC	TCGA-DD-A3A0-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101504245:101504533:101520078:101520833:101525896:101525970,	101520079	101520833	101520487	101520487	Frame_Shift_Del	T	-	p.F168fs
LIHC	TCGA-DD-A3A0-01	NFKBIZ	ENST00000326172.5,ENST00000394054.2,ENST00000326151.5,ENST00000483180.1	chr3	101573905:101574052:101574238:101574302:101574576:101574746,	101574239	101574302	101574259	101574259	Frame_Shift_Del	G	-	p.V537fs
LIHC	TCGA-DD-A3A0-01	NFKBIZ	ENST00000326172.5,ENST00000394054.2,ENST00000326151.5,ENST00000483180.1	chr3	101574576:101574746:101575916:101576027:101576135:101576303,	101575917	101576027	101575986	101575986	Frame_Shift_Del	T	-	p.F632fs
LIHC	TCGA-DD-A3A0-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105412337:105412432:105420937:105421303:105422831:105423017,	105420938	105421303	105421017	105421017	Frame_Shift_Del	C	-	p.G627fs
LIHC	TCGA-DD-A3A0-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105464760:105464882:105470305:105470462:105495239:105495386,	105470306	105470462	105470344	105470344	Frame_Shift_Del	A	-	p.S229fs
LIHC	TCGA-DD-A3A0-01	CBLB	ENST00000394027.3,ENST00000405772.1,ENST00000264122.4,ENST00000403724.1	chr3	105495239:105495386:105572257:105572508:105586253:105586435,	105572258	105572508	105572352	105572352	Frame_Shift_Del	T	-	p.I109fs
LIHC	TCGA-DD-A3A0-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491988	107491988	Frame_Shift_Del	A	-	p.K475fs
LIHC	TCGA-DD-A3A0-01	BBX	ENST00000325805.8,ENST00000473542.1,ENST00000443253.1,ENST00000416476.2	chr3	107497349:107497366:107508633:107508723:107510086:107510146,	107508634	107508723	107508669	107508669	Frame_Shift_Del	A	-	p.K747fs
LIHC	TCGA-DD-A3A0-01	CD47	ENST00000355354.7,ENST00000361309.5	chr3	107779591:107779699:107789939:107790029:107798837:107799191,	107789940	107790029	107790005	107790005	Frame_Shift_Del	T	-	p.N142fs
LIHC	TCGA-DD-A3A0-01	IFT57	ENST00000264538.3	chr3	107884281:107884340:107885700:107885832:107886639:107886711,	107885701	107885832	107885768	107885768	Frame_Shift_Del	T	-	p.K305fs
LIHC	TCGA-DD-A3A0-01	IFT57	ENST00000264538.3	chr3	107884281:107884340:107885700:107885832:107886639:107886711,	107885701	107885832	107885825	107885825	Frame_Shift_Del	A	-	p.L286fs
LIHC	TCGA-DD-A3A0-01	MYH15	ENST00000478998.1,ENST00000273353.3	chr3	108127126:108127251:108129429:108129779:108133078:108133275,	108129430	108129779	108129733	108129733	Frame_Shift_Del	C	-	p.V1418fs
LIHC	TCGA-DD-A3A0-01	DZIP3	ENST00000479138.1	chr3	108308580:108308686:108324181:108324285:108326935:108327005,108308901:108308943:108324181:108324285:108326935:108327005,	108324182	108324285	108324275	108324275	Frame_Shift_Del	T	-	p.F9fs
LIHC	TCGA-DD-A3A0-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363185	108363185	Frame_Shift_Del	T	-	p.L439fs
LIHC	TCGA-DD-A3A0-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363460	108363460	Frame_Shift_Del	A	-	p.K532fs
LIHC	TCGA-DD-A3A0-01	DPPA4	ENST00000478791.1,ENST00000463966.1	chr3	109050793:109050878:109052716:109052840:109056310:109056362,	109052717	109052840	109052773	109052773	Frame_Shift_Del	A	-	p.L41fs
LIHC	TCGA-DD-A3A0-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111603888	111603888	Frame_Shift_Del	A	-	p.N322fs
LIHC	TCGA-DD-A3A0-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604022	111604022	Frame_Shift_Del	T	-	p.H366fs
LIHC	TCGA-DD-A3A0-01	GCSAM	ENST00000470085.1,ENST00000495418.1	chr3	111846863:111847075:111849291:111849360:111851938:111852013,	111849292	111849360	111849332	111849332	Frame_Shift_Del	A	-	p.W20fs
LIHC	TCGA-DD-A3A0-01	GCSAM	ENST00000484193.1	chr3	111846863:111846908:111849291:111849366:111851938:111852013,	111849292	111849366	111849332	111849332	Frame_Shift_Del	A	-	p.W20fs
LIHC	TCGA-DD-A3A0-01	CD200	ENST00000473539.1,ENST00000315711.8,ENST00000383681.3	chr3	112063808:112064135:112066404:112066677:112068558:112068666,	112066405	112066677	112066410	112066410	Frame_Shift_Del	C	-	p.P143fs
LIHC	TCGA-DD-A3A0-01	CD200	ENST00000478595.1,ENST00000498096.1	chr3	112063808:112064135:112066409:112066677:112068558:112068666,	112066410	112066677	112066410	112066410	Frame_Shift_Del	C	-	p.P143fs
LIHC	TCGA-DD-A3A0-01	CD200	ENST00000473539.1,ENST00000315711.8,ENST00000383681.3	chr3	112063808:112064135:112066404:112066677:112068558:112068666,	112066405	112066677	112066451	112066451	Frame_Shift_Del	A	-	p.L156fs
LIHC	TCGA-DD-A3A0-01	CD200	ENST00000478595.1,ENST00000498096.1	chr3	112063808:112064135:112066409:112066677:112068558:112068666,	112066410	112066677	112066451	112066451	Frame_Shift_Del	A	-	p.L156fs
LIHC	TCGA-DD-A3A0-01	BTLA	ENST00000334529.5	chr3	112188604:112188651:112190058:112190202:112198301:112198616,	112190059	112190202	112190164	112190164	Frame_Shift_Del	T	-	p.M148fs
LIHC	TCGA-DD-A3A0-01	SLC35A5	ENST00000484995.1,ENST00000492406.1,ENST00000494706.1,ENST00000261034.2,ENST00000460615.1	chr3	112289386:112289517:112292735:112292803:112299392:112299406,	112292736	112292803	112292759	112292759	Frame_Shift_Del	T	-	p.N128fs
LIHC	TCGA-DD-A3A0-01	CD200R1	ENST00000471858.1,ENST00000308611.3	chr3	112643336:112643382:112643931:112644040:112647662:112647911,	112643932	112644040	112644024	112644024	Frame_Shift_Del	T	-	p.K239fs
LIHC	TCGA-DD-A3A0-01	GTPBP8	ENST00000488781.1	chr3	112709855:112710182:112711872:112711971:112715738:112715838,	112711873	112711971	112711963	112711963	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-DD-A3A0-01	GTPBP8	ENST00000473129.1,ENST00000467752.1,ENST00000383678.2	chr3	112709855:112710182:112713981:112714112:112715738:112715838,112711885:112711971:112713981:112714112:112715738:112715838,	112713982	112714112	112714002	112714002	Frame_Shift_Del	T	-	p.N119fs
LIHC	TCGA-DD-A3A0-01	BOC	ENST00000355385.3,ENST00000495514.1,ENST00000273395.4	chr3	112987145:112987292:112989647:112989791:112991256:112991550,	112989648	112989791	112989719	112989719	Frame_Shift_Del	A	-	p.K199fs
LIHC	TCGA-DD-A3A0-01	SPICE1	ENST00000295872.4	chr3	113166884:113166987:113169182:113169363:113172312:113172797,	113169183	113169363	113169274	113169274	Frame_Shift_Del	T	-	p.K744fs
LIHC	TCGA-DD-A3A0-01	SIDT1	ENST00000463226.1,ENST00000393830.3,ENST00000264852.4	chr3	113327265:113327383:113329854:113329991:113330932:113331041,	113329855	113329991	113329930	113329930	Frame_Shift_Del	C	-	p.A599fs
LIHC	TCGA-DD-A3A0-01	GRAMD1C	ENST00000452134.2,ENST00000358160.4,ENST00000479212.1	chr3	113594330:113594434:113595011:113595107:113601598:113601679,	113595012	113595107	113595103	113595103	Frame_Shift_Del	A	-	p.E152fs
LIHC	TCGA-DD-A3A0-01	ZDHHC23	ENST00000498275.1	chr3	113667532:113667581:113667666:113667810:113672546:113672829,	113667667	113667810	113667750	113667750	Frame_Shift_Del	A	-	p.E34fs
LIHC	TCGA-DD-A3A0-01	GAP43	ENST00000393780.3	chr3	115342356:115342566:115382367:115382763:115394859:115395457,	115382368	115382763	115382668	115382668	Frame_Shift_Del	T	-	p.F15fs
LIHC	TCGA-DD-A3A0-01	LSAMP	ENST00000490035.2,ENST00000333617.4,ENST00000539563.1,ENST00000498645.1	chr3	115561304:115561425:115571329:115571464:115738361:115738487,	115571330	115571464	115571411	115571411	Frame_Shift_Del	C	-	p.E190fs
LIHC	TCGA-DD-A3A0-01	UPK1B	ENST00000460625.1	chr3	118909091:118909166:118909852:118909951:118913065:118913105,	118909853	118909951	118909907	118909907	Frame_Shift_Del	A	-	p.K142fs
LIHC	TCGA-DD-A3A0-01	UPK1B	ENST00000497685.1,ENST00000494855.1,ENST00000479520.1,ENST00000264234.3	chr3	118909091:118909166:118909828:118909951:118913065:118913105,	118909829	118909951	118909907	118909907	Frame_Shift_Del	A	-	p.K142fs
LIHC	TCGA-DD-A3A0-01	UPK1B	ENST00000497685.1,ENST00000460625.1,ENST00000264234.3	chr3	118913065:118913245:118917903:118917987:118922763:118922959,	118917904	118917987	118917947	118917947	Frame_Shift_Del	G	-	p.W231fs
LIHC	TCGA-DD-A3A0-01	B4GALT4	ENST00000480814.1,ENST00000483209.1,ENST00000393765.2,ENST00000467604.1	chr3	118945655:118945888:118948693:118949091:118953991:118954074,118945835:118945888:118948693:118949091:118955699:118955917,	118948694	118949091	118948927	118948927	Frame_Shift_Del	A	-	p.F7fs
LIHC	TCGA-DD-A3A0-01	ADPRH	ENST00000478927.1	chr3	119298522:119298698:119300980:119301314:119305131:119305210,	119300981	119301314	119301201	119301201	Frame_Shift_Del	C	-	p.A62fs
LIHC	TCGA-DD-A3A0-01	GSK3B	ENST00000264235.8,ENST00000316626.5	chr3	119545547:119545702:119562101:119562200:119582265:119582452,	119562102	119562200	119562124	119562124	Frame_Shift_Del	G	-	p.P391fs
LIHC	TCGA-DD-A3A0-01	GSK3B	ENST00000264235.8	chr3	119545547:119545702:119582265:119582452:119595259:119595355,119562101:119562200:119582265:119582452:119595259:119595355,	119582266	119582452	119582342	119582342	Frame_Shift_Del	A	-	p.F340fs
LIHC	TCGA-DD-A3A0-01	POLQ	ENST00000264233.5	chr3	121190836:121191011:121192196:121192334:121195386:121195580,	121192197	121192334	121192271	121192271	Frame_Shift_Del	T	-	p.T2157fs
LIHC	TCGA-DD-A3A0-01	POLQ	ENST00000474243.1	chr3	121187151:121187278:121195386:121195580:121200418:121200443,	121195387	121195580	121195412	121195412	Frame_Shift_Del	A	-	p.F2127fs
LIHC	TCGA-DD-A3A0-01	POLQ	ENST00000264233.5	chr3	121258279:121258436:121260195:121260326:121263573:121263753,	121260196	121260326	121260297	121260297	Frame_Shift_Del	C	-	p.A125fs
LIHC	TCGA-DD-A3A0-01	GOLGB1	ENST00000393667.3,ENST00000482512.1,ENST00000340645.5	chr3	121396131:121396297:121400533:121400712:121409516:121411428,	121400534	121400712	121400599	121400599	Frame_Shift_Del	A	-	p.F2936fs
LIHC	TCGA-DD-A3A0-01	GOLGB1	ENST00000393667.3,ENST00000482512.1,ENST00000340645.5	chr3	121396131:121396297:121400533:121400712:121409516:121411428,	121400534	121400712	121400605	121400605	Frame_Shift_Del	T	-	p.K2934fs
LIHC	TCGA-DD-A3A0-01	PARP9	ENST00000360356.2,ENST00000462315.1,ENST00000489652.1,ENST00000477522.2,ENST00000492382.1,ENST00000471785.1	chr3	122255789:122255920:122259318:122259699:122264278:122264336,	122259319	122259699	122259345	122259345	Frame_Shift_Del	T	-	p.K580fs
LIHC	TCGA-DD-A3A0-01	DTX3L	ENST00000383661.3	chr3	122283273:122283460:122284705:122284917:122289301:122289519,	122284706	122284917	122284817	122284817	Frame_Shift_Del	A	-	p.Q100fs
LIHC	TCGA-DD-A3A0-01	DTX3L	ENST00000296161.4	chr3	122284705:122284917:122287335:122288871:122289301:122289382,	122287336	122288871	122288294	122288294	Frame_Shift_Del	T	-	p.L455fs
LIHC	TCGA-DD-A3A0-01	PARP15	ENST00000465304.1	chr3	122329340:122329577:122331887:122332115:122334625:122334704,122329340:122329577:122331887:122332115:122334132:122334167,	122331888	122332115	122331997	122331997	Frame_Shift_Del	T	-	p.V218fs
LIHC	TCGA-DD-A3A0-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345823	122345823	Frame_Shift_Del	A	-	p.K462fs
LIHC	TCGA-DD-A3A0-01	PARP14	ENST00000474629.2	chr3	122405926:122405960:122411147:122411390:122414272:122414473,	122411148	122411390	122411353	122411353	Frame_Shift_Del	T	-	p.D187fs
LIHC	TCGA-DD-A3A0-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418835	122418835	Frame_Shift_Del	T	-	p.Y478fs
LIHC	TCGA-DD-A3A0-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122422588:122422825:122423373:122423595:122427036:122427115,	122423374	122423595	122423539	122423539	Frame_Shift_Del	A	-	p.K1162fs
LIHC	TCGA-DD-A3A0-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437236	122437236	Frame_Shift_Del	A	-	p.Q1413fs
LIHC	TCGA-DD-A3A0-01	HSPBAP1	ENST00000383659.1	chr3	122471437:122471521:122474106:122474278:122477618:122477700,	122474107	122474278	122474158	122474158	Frame_Shift_Del	A	-	p.F230fs
LIHC	TCGA-DD-A3A0-01	SEMA5B	ENST00000393583.2	chr3	122667428:122667556:122679986:122680148:122693949:122694217,122667428:122667556:122679986:122680148:122746310:122746425,122667428:122667556:122679986:122680148:122711631:122712120,	122679987	122680148	122680077	122680077	Frame_Shift_Del	G	-	p.H13fs
LIHC	TCGA-DD-A3A0-01	PDIA5	ENST00000489923.1,ENST00000316218.7	chr3	122835077:122835145:122842912:122843004:122843118:122843190,	122842913	122843004	122842958	122842958	Frame_Shift_Del	A	-	p.K219fs
LIHC	TCGA-DD-A3A0-01	ADCY5	ENST00000462833.1,ENST00000309879.5,ENST00000491190.1	chr3	123003424:123003583:123005531:123005656:123008596:123008801,	123005532	123005656	123005640	123005640	Frame_Shift_Del	G	-	p.P1183fs
LIHC	TCGA-DD-A3A0-01	MYLK	ENST00000360304.3,ENST00000346322.5,ENST00000359169.1,ENST00000360772.3	chr3	123471177:123471385:123512523:123512691:123550394:123550517,	123512524	123512691	123512573	123512573	Frame_Shift_Del	G	-	p.P39fs
LIHC	TCGA-DD-A3A0-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124153180:124153372:124157734:124157884:124160791:124160906,	124157735	124157884	124157840	124157840	Frame_Shift_Del	C	-	p.P1050fs
LIHC	TCGA-DD-A3A0-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124153180:124153372:124157734:124157884:124160791:124160906,	124157735	124157884	124157862	124157862	Frame_Shift_Del	A	-	p.E1057fs
LIHC	TCGA-DD-A3A0-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124456530	124456530	Frame_Shift_Del	G	-	p.E142fs
LIHC	TCGA-DD-A3A0-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124456530	124456530	Frame_Shift_Del	G	-	p.E142fs
LIHC	TCGA-DD-A3A0-01	ITGB5	ENST00000296181.4	chr3	124515437:124515664:124536467:124536557:124538585:124538681,124527868:124528003:124536467:124536557:124538585:124538681,	124536468	124536557	124536499	124536499	Frame_Shift_Del	T	-	p.N366fs
LIHC	TCGA-DD-A3A0-01	ITGB5	ENST00000481591.1,ENST00000296181.4,ENST00000476988.2	chr3	124527868:124528003:124538585:124538681:124540159:124540305,124536467:124536557:124538585:124538681:124540159:124540305,	124538586	124538681	124538605	124538605	Frame_Shift_Del	T	-	p.N340fs
LIHC	TCGA-DD-A3A0-01	ITGB5	ENST00000296181.4,ENST00000496703.1	chr3	124538585:124538681:124540159:124540321:124560229:124560398,	124540160	124540321	124540287	124540287	Frame_Shift_Del	A	-	p.L273fs
LIHC	TCGA-DD-A3A0-01	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1,ENST00000483944.1	chr3	124802654:124802896:124807153:124807214:124810282:124810400,	124807154	124807214	124807190	124807190	Frame_Shift_Del	A	-	p.F678fs
LIHC	TCGA-DD-A3A0-01	SNX4	ENST00000536067.1,ENST00000251775.4,ENST00000471751.1	chr3	125166554:125166670:125170148:125170263:125172653:125172799,	125170149	125170263	125170213	125170213	Frame_Shift_Del	T	-	p.K414fs
LIHC	TCGA-DD-A3A0-01	SNX4	ENST00000536067.1,ENST00000251775.4,ENST00000471751.1	chr3	125199090:125199163:125208251:125208307:125216184:125216232,	125208252	125208307	125208261	125208261	Frame_Shift_Del	T	-	p.N215fs
LIHC	TCGA-DD-A3A0-01	ALDH1L1	ENST00000472186.1,ENST00000473607.1,ENST00000273450.3,ENST00000413612.1,ENST00000452905.2,ENST00000393431.2,ENST00000393434.2	chr3	125869248:125869374:125872286:125872424:125873396:125873462,	125872287	125872424	125872334	125872334	Frame_Shift_Del	C	-	p.V272fs
LIHC	TCGA-DD-A3A0-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000490367.1,ENST00000393431.2,ENST00000393434.2,ENST00000488356.1,ENST00000460368.1	chr3	125876242:125876351:125877247:125877482:125879695:125879845,	125877248	125877482	125877315	125877315	Frame_Shift_Del	G	-	p.R99fs
LIHC	TCGA-DD-A3A0-01	TPRA1	ENST00000489960.1,ENST00000355552.3,ENST00000490290.1,ENST00000393400.2,ENST00000469111.1,ENST00000296210.7,ENST00000483868.1,ENST00000490643.1	chr3	127295832:127295919:127298582:127298715:127298864:127299006,	127298583	127298715	127298601	127298601	Frame_Shift_Del	A	-	p.F80fs
LIHC	TCGA-DD-A3A0-01	SEC61A1	ENST00000243253.3	chr3	127771268:127771402:127771677:127771745:127774358:127774424,	127771678	127771745	127771731	127771731	Frame_Shift_Del	A	-	p.K21fs
LIHC	TCGA-DD-A3A0-01	RUVBL1	ENST00000478892.1,ENST00000322623.5	chr3	127800096:127800252:127801325:127801417:127806548:127806638,	127801326	127801417	127801351	127801351	Frame_Shift_Del	C	-	p.E396fs
LIHC	TCGA-DD-A3A0-01	EEFSEC	ENST00000483457.1	chr3	127872510:127872666:127965678:127965886:127980970:127981067,	127965679	127965886	127965801	127965801	Frame_Shift_Del	A	-	p.K147fs
LIHC	TCGA-DD-A3A0-01	RPN1	ENST00000296255.3,ENST00000497289.1	chr3	128348793:128348986:128350790:128351000:128356641:128356948,	128350791	128351000	128350794	128350794	Frame_Shift_Del	A	-	p.F280fs
LIHC	TCGA-DD-A3A0-01	RAB7A	ENST00000464496.1,ENST00000265062.3	chr3	128516785:128516912:128525214:128525433:128526385:128526437,	128525215	128525433	128525368	128525368	Frame_Shift_Del	C	-	p.P112fs
LIHC	TCGA-DD-A3A0-01	EFCC1	ENST00000436022.2,ENST00000481536.1,ENST00000480450.1	chr3	128751664:128751809:128753006:128753172:128755819:128755960,	128753007	128753172	128753082	128753082	Frame_Shift_Del	G	-	p.L16fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000509828.1,ENST00000429544.2,ENST00000393278.2,ENST00000249910.1	chr3	129150328:129150421:129151345:129151449:129151940:129152090,	129151346	129151449	129151366	129151366	Frame_Shift_Del	A	-	p.C543fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155343	129155343	Frame_Shift_Del	T	-	p.M382fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155343	129155343	Frame_Shift_Del	T	-	p.M382fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155502	129155502	Frame_Shift_Del	T	-	p.T329fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155502	129155502	Frame_Shift_Del	T	-	p.T329fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155743	129155743	Frame_Shift_Del	T	-	p.K248fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155743	129155743	Frame_Shift_Del	T	-	p.K248fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155930	129155930	Frame_Shift_Del	T	-	p.K186fs
LIHC	TCGA-DD-A3A0-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155930	129155930	Frame_Shift_Del	T	-	p.K186fs
LIHC	TCGA-DD-A3A0-01	IFT122	ENST00000296266.3,ENST00000507564.1	chr3	129177441:129177520:129179696:129179849:129180070:129180120,	129179697	129179849	129179752	129179752	Frame_Shift_Del	A	-	p.K110fs
LIHC	TCGA-DD-A3A0-01	PLXND1	ENST00000393239.1,ENST00000512744.1	chr3	129277378:129277418:129278455:129278626:129279172:129279257,	129278456	129278626	129278510	129278510	Frame_Shift_Del	C	-	p.K1750fs
LIHC	TCGA-DD-A3A0-01	PLXND1	ENST00000324093.4,ENST00000506979.1,ENST00000508630.1	chr3	129277378:129277418:129278462:129278626:129279172:129279257,	129278463	129278626	129278510	129278510	Frame_Shift_Del	C	-	p.K1750fs
LIHC	TCGA-DD-A3A0-01	PLXND1	ENST00000324093.4,ENST00000393239.1	chr3	129292436:129292588:129293178:129293333:129294311:129294405,	129293179	129293333	129293227	129293227	Frame_Shift_Del	C	-	p.G879fs
LIHC	TCGA-DD-A3A0-01	COL6A6	ENST00000358511.6	chr3	130363834:130363846:130367912:130368406:130377519:130377616,	130367913	130368406	130367926	130367926	Frame_Shift_Del	C	-	p.C1751fs
LIHC	TCGA-DD-A3A0-01	COL6A6	ENST00000358511.6	chr3	130363834:130363846:130367912:130368406:130377519:130377616,	130367913	130368406	130368141	130368141	Frame_Shift_Del	A	-	p.Q1823fs
LIHC	TCGA-DD-A3A0-01	COL6A6	ENST00000358511.6	chr3	130363834:130363846:130367912:130368406:130377519:130377616,	130367913	130368406	130368236	130368236	Frame_Shift_Del	A	-	p.K1855fs
LIHC	TCGA-DD-A3A0-01	ATP2C1	ENST00000422190.2,ENST00000513801.1,ENST00000533801.2,ENST00000505330.1,ENST00000359644.3,ENST00000507194.1,ENST00000504948.1,ENST00000428331.2,ENST00000514654.1,ENST00000510168.1,ENST00000508532.1,ENST00000504381.1,ENST00000393221.4,ENST00000504612.1,ENST00000507488.2	chr3	130717137:130717233:130718361:130718503:130734995:130735400,130717137:130717233:130718361:130718503:130720063:130720158,	130718362	130718503	130718404	130718404	Frame_Shift_Del	T	-	p.F844fs
LIHC	TCGA-DD-A3A0-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743653	130743653	Frame_Shift_Del	A	-	p.F166fs
LIHC	TCGA-DD-A3A0-01	NEK11	ENST00000510823.1,ENST00000507910.1,ENST00000510688.1,ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000383366.4,ENST00000508196.1,ENST00000356918.4,ENST00000511262.1	chr3	130884273:130884363:130887673:130887781:130889616:130889731,	130887674	130887781	130887702	130887702	Frame_Shift_Del	A	-	p.E402fs
LIHC	TCGA-DD-A3A0-01	DNAJC13	ENST00000260818.6	chr3	132203431:132203516:132207141:132207296:132207819:132207865,	132207142	132207296	132207190	132207190	Frame_Shift_Del	T	-	p.L1106fs
LIHC	TCGA-DD-A3A0-01	DNAJC13	ENST00000260818.6	chr3	132222057:132222225:132224145:132224259:132226080:132226197,	132224146	132224259	132224254	132224254	Frame_Shift_Del	A	-	p.K1666fs
LIHC	TCGA-DD-A3A0-01	UBA5	ENST00000473651.1,ENST00000468227.1,ENST00000493720.2,ENST00000264991.4,ENST00000356232.4,ENST00000494238.2	chr3	132390893:132391021:132394091:132394227:132394448:132394524,	132394092	132394227	132394149	132394149	Frame_Shift_Del	T	-	p.D290fs
LIHC	TCGA-DD-A3A0-01	NPHP3	ENST00000326682.8,ENST00000337331.5,ENST00000469232.1,ENST00000343113.4	chr3	132437837:132437988:132438548:132438674:132440806:132440851,	132438549	132438674	132438662	132438662	Frame_Shift_Del	T	-	p.T136fs
LIHC	TCGA-DD-A3A0-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133098869	133098869	Frame_Shift_Del	C	-	p.T105fs
LIHC	TCGA-DD-A3A0-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133098904	133098904	Frame_Shift_Del	C	-	p.P117fs
LIHC	TCGA-DD-A3A0-01	TOPBP1	ENST00000260810.5	chr3	133336003:133336170:133337056:133337277:133338998:133339191,	133337057	133337277	133337234	133337234	Frame_Shift_Del	G	-	p.Q1139fs
LIHC	TCGA-DD-A3A0-01	TOPBP1	ENST00000260810.5	chr3	133368777:133368787:133371306:133371473:133372188:133372312,	133371307	133371473	133371359	133371359	Frame_Shift_Del	T	-	p.N346fs
LIHC	TCGA-DD-A3A0-01	TOPBP1	ENST00000572787.1	chr3	133368777:133368787:133371306:133371391:133372188:133372312,	133371307	133371391	133371359	133371359	Frame_Shift_Del	T	-	p.N346fs
LIHC	TCGA-DD-A3A0-01	TOPBP1	ENST00000508524.1	chr3	133368777:133368787:133371306:133371458:133372188:133372312,	133371307	133371458	133371359	133371359	Frame_Shift_Del	T	-	p.N346fs
LIHC	TCGA-DD-A3A0-01	SLCO2A1	ENST00000481359.3,ENST00000493729.1,ENST00000310926.4	chr3	133667497:133667544:133667736:133667815:133670051:133670188,	133667737	133667815	133667773	133667773	Frame_Shift_Del	C	-	p.A302fs
LIHC	TCGA-DD-A3A0-01	RYK	ENST00000296084.4,ENST00000427044.2,ENST00000460933.1	chr3	133913925:133914026:133921573:133921718:133926315:133926369,	133921574	133921718	133921674	133921674	Frame_Shift_Del	A	-	p.Y38fs
LIHC	TCGA-DD-A3A0-01	CEP63	ENST00000337090.3,ENST00000513612.2,ENST00000606977.1	chr3	134270770:134270854:134276983:134277189:134277991:134278147,	134276984	134277189	134277140	134277140	Frame_Shift_Del	T	-	p.F542fs
LIHC	TCGA-DD-A3A0-01	EPHB1	ENST00000398015.3	chr3	134644657:134644722:134670212:134670894:134825289:134825445,	134670213	134670894	134670462	134670462	Frame_Shift_Del	A	-	p.K125fs
LIHC	TCGA-DD-A3A0-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000434713.2,ENST00000483235.1	chr3	136059332:136059447:136060282:136060393:136062673:136062848,	136060283	136060393	136060343	136060343	Frame_Shift_Del	T	-	p.N1166fs
LIHC	TCGA-DD-A3A0-01	STAG1	ENST00000383202.2,ENST00000487065.1,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136196130:136196254:136219064:136219138:136221469:136221621,	136219065	136219138	136219128	136219128	Frame_Shift_Del	T	-	p.N280fs
LIHC	TCGA-DD-A3A0-01	CLDN18	ENST00000183605.5,ENST00000343735.4	chr3	137742499:137742664:137743448:137743566:137748638:137748749,	137743449	137743566	137743478	137743478	Frame_Shift_Del	T	-	p.F139fs
LIHC	TCGA-DD-A3A0-01	CLDN18	ENST00000183605.5,ENST00000343735.4	chr3	137743448:137743566:137748638:137748749:137749811:137749947,	137748639	137748749	137748725	137748725	Frame_Shift_Del	G	-	p.R197fs
LIHC	TCGA-DD-A3A0-01	DBR1	ENST00000505015.2,ENST00000260803.4	chr3	137882619:137882700:137885922:137886147:137888948:137889034,	137885923	137886147	137885967	137885967	Frame_Shift_Del	A	-	p.S224fs
LIHC	TCGA-DD-A3A0-01	DBR1	ENST00000463982.2	chr3	137888948:137889034:137890474:137890555:137892343:137892468,137890161:137890310:137890474:137890555:137892343:137892468,	137890475	137890555	137890536	137890536	Frame_Shift_Del	T	-	p.K114fs
LIHC	TCGA-DD-A3A0-01	ARMC8	ENST00000489213.1,ENST00000471709.1,ENST00000393058.3,ENST00000470821.1,ENST00000461822.1,ENST00000466749.1,ENST00000469044.1,ENST00000481646.1,ENST00000491704.1,ENST00000461600.1,ENST00000471453.1,ENST00000485396.1,ENST00000538260.1,ENST00000358441.2	chr3	137940767:137940839:137942230:137942373:137942477:137942575,	137942231	137942373	137942274	137942274	Frame_Shift_Del	A	-	p.K80fs
LIHC	TCGA-DD-A3A0-01	NME9	ENST00000536478.1,ENST00000478220.1,ENST00000474690.1,ENST00000317876.4,ENST00000383180.2,ENST00000492993.1	chr3	138034368:138034485:138036989:138037061:138038319:138038422,138033173:138033249:138036989:138037061:138038319:138038422,	138036990	138037061	138036995	138036995	Frame_Shift_Del	A	-	p.Y66fs
LIHC	TCGA-DD-A3A0-01	MRAS	ENST00000474559.1	chr3	138067535:138067609:138091707:138091918:138116165:138116319,138068103:138068221:138091707:138091918:138116165:138116319,	138091708	138091918	138091822	138091822	Frame_Shift_Del	T	-	p.F34fs
LIHC	TCGA-DD-A3A0-01	CEP70	ENST00000489254.1	chr3	138251355:138251412:138256019:138256189:138289159:138289340,138251355:138251412:138256019:138256189:138310695:138310798,	138256020	138256189	138256131	138256131	Frame_Shift_Del	A	-	p.L175fs
LIHC	TCGA-DD-A3A0-01	PIK3CB	ENST00000462898.1	chr3	138456548:138456728:138461399:138461597:138474595:138474821,	138461400	138461597	138461461	138461461	Frame_Shift_Del	T	-	p.N187fs
LIHC	TCGA-DD-A3A0-01	PIK3CB	ENST00000289153.2,ENST00000477593.1	chr3	138456548:138456728:138461399:138461623:138474595:138474821,	138461400	138461623	138461461	138461461	Frame_Shift_Del	T	-	p.N187fs
LIHC	TCGA-DD-A3A0-01	COPB2	ENST00000507777.1,ENST00000333188.5	chr3	139077585:139077654:139077839:139078020:139078111:139078204,	139077840	139078020	139078011	139078011	Frame_Shift_Del	T	-	p.K771fs
LIHC	TCGA-DD-A3A0-01	SLC25A36	ENST00000507429.1,ENST00000324194.6,ENST00000512023.1,ENST00000446041.2,ENST00000512506.1,ENST00000393015.4,ENST00000502594.1	chr3	140675468:140675533:140678304:140678382:140681968:140682069,	140678305	140678382	140678339	140678339	Frame_Shift_Del	T	-	p.F81fs
LIHC	TCGA-DD-A3A0-01	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141292785:141292909:141295841:141295948:141299209:141299287,	141295842	141295948	141295883	141295883	Frame_Shift_Del	T	-	p.F509fs
LIHC	TCGA-DD-A3A0-01	TFDP2	ENST00000475734.1	chr3	141712414:141712427:141724282:141724386:141747420:141747439,141713937:141713983:141724282:141724386:141811902:141811969,141713937:141713983:141724282:141724386:141772956:141772991,141713937:141713983:141724282:141724386:141747420:141747439,141713937:141713983:141724282:141724386:141868024:141868302,	141724283	141724386	141724328	141724328	Frame_Shift_Del	T	-	p.L47fs
LIHC	TCGA-DD-A3A0-01	GK5	ENST00000492097.1,ENST00000392993.2,ENST00000460544.1,ENST00000480757.1,ENST00000544571.1	chr3	141917698:141917775:141923536:141923630:141932367:141932443,	141923537	141923630	141923626	141923626	Frame_Shift_Del	T	-	p.T108fs
LIHC	TCGA-DD-A3A0-01	GK5	ENST00000487672.1	chr3	141917698:141917775:141923058:141923630:141932367:141932443,	141923059	141923630	141923626	141923626	Frame_Shift_Del	T	-	p.T108fs
LIHC	TCGA-DD-A3A0-01	XRN1	ENST00000264951.4	chr3	142031439:142031600:142031977:142032016:142037433:142037536,	142031978	142032016	142031981	142031981	Frame_Shift_Del	C	-	p.A1553fs
LIHC	TCGA-DD-A3A0-01	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142037631:142037745:142048275:142048457:142051216:142051266,	142048276	142048457	142048378	142048378	Frame_Shift_Del	G	-	p.P1433fs
LIHC	TCGA-DD-A3A0-01	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142054289:142054351:142066075:142066184:142074242:142074338,	142066076	142066184	142066137	142066137	Frame_Shift_Del	T	-	p.K1272fs
LIHC	TCGA-DD-A3A0-01	XRN1	ENST00000498077.2,ENST00000467077.1,ENST00000264951.4,ENST00000392981.2	chr3	142083888:142084021:142084151:142084208:142089326:142089430,	142084152	142084208	142084162	142084162	Frame_Shift_Del	A	-	p.L1085fs
LIHC	TCGA-DD-A3A0-01	XRN1	ENST00000498077.2,ENST00000264951.4,ENST00000392981.2	chr3	142084151:142084208:142089326:142089462:142090080:142090170,	142089327	142089462	142089334	142089334	Frame_Shift_Del	T	-	p.K1066fs
LIHC	TCGA-DD-A3A0-01	XRN1	ENST00000472697.1,ENST00000264951.4,ENST00000392981.2,ENST00000477237.1,ENST00000463916.1	chr3	142142401:142142484:142144063:142144174:142144270:142144377,	142144064	142144174	142144101	142144101	Frame_Shift_Del	T	-	p.N197fs
LIHC	TCGA-DD-A3A0-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000513291.1	chr3	142176445:142176597:142177799:142177953:142178068:142178225,	142177800	142177953	142177900	142177900	Frame_Shift_Del	C	-	p.G2468fs
LIHC	TCGA-DD-A3A0-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000513291.1	chr3	142178068:142178225:142180781:142180932:142183938:142184082,	142180782	142180932	142180855	142180855	Frame_Shift_Del	T	-	p.E2373fs
LIHC	TCGA-DD-A3A0-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142241569:142241683:142242834:142243041:142253921:142254047,	142242835	142243041	142243008	142243008	Frame_Shift_Del	T	-	p.T1327fs
LIHC	TCGA-DD-A3A0-01	TRPC1	ENST00000460401.1	chr3	142443406:142443573:142467099:142467302:142496473:142496500,	142467100	142467302	142467161	142467161	Frame_Shift_Del	T	-	p.I130fs
LIHC	TCGA-DD-A3A0-01	TRPC1	ENST00000476941.1,ENST00000273482.6	chr3	142509860:142510000:142511665:142511809:142521010:142521186,	142511666	142511809	142511768	142511768	Frame_Shift_Del	T	-	p.F481fs
LIHC	TCGA-DD-A3A0-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1	chr3	145804573:145804695:145806372:145806498:145809586:145809688,	145806373	145806498	145806385	145806385	Frame_Shift_Del	A	-	p.F331fs
LIHC	TCGA-DD-A3A0-01	ZIC4	ENST00000525172.2,ENST00000473123.1,ENST00000484399.1,ENST00000425731.3,ENST00000383075.3	chr3	147108717:147109033:147113638:147114256:147120514:147120599,	147113639	147114256	147113996	147113996	Frame_Shift_Del	G	-	p.H111fs
LIHC	TCGA-DD-A3A0-01	CPA3	ENST00000296046.3,ENST00000477926.1	chr3	148600291:148600382:148601399:148601602:148603879:148603964,	148601400	148601602	148601558	148601558	Frame_Shift_Del	C	-	p.P313fs
LIHC	TCGA-DD-A3A0-01	HPS3	ENST00000486530.1	chr3	148847477:148847727:148857790:148858285:148858803:148858975,	148857791	148858285	148857977	148857977	Frame_Shift_Del	C	-	p.A135fs
LIHC	TCGA-DD-A3A0-01	HPS3	ENST00000460120.1,ENST00000296051.2	chr3	148876452:148876633:148877832:148878066:148879934:148880120,	148877833	148878066	148877860	148877860	Frame_Shift_Del	T	-	p.F634fs
LIHC	TCGA-DD-A3A0-01	CP	ENST00000264613.6,ENST00000490639.1	chr3	148928144:148928166:148930237:148930485:148939433:148939611,	148930238	148930485	148930354	148930354	Frame_Shift_Del	A	-	p.L93fs
LIHC	TCGA-DD-A3A0-01	RNF13	ENST00000467996.1,ENST00000474348.1,ENST00000459632.1,ENST00000466795.1,ENST00000344229.3,ENST00000392894.3,ENST00000491086.1,ENST00000468648.1,ENST00000490631.1	chr3	149531051:149531140:149589815:149589941:149613259:149613285,149570302:149570383:149589815:149589941:149613259:149613285,	149589816	149589941	149589818	149589818	Frame_Shift_Del	T	-	p.G66fs
LIHC	TCGA-DD-A3A0-01	RNF13	ENST00000474348.1,ENST00000361785.6,ENST00000482083.3,ENST00000467977.1,ENST00000491086.1	chr3	149613259:149613347:149619858:149619949:149629764:149629870,149613259:149613357:149619858:149619949:149629764:149629870,	149619859	149619949	149619943	149619943	Frame_Shift_Del	A	-	p.E165fs
LIHC	TCGA-DD-A3A0-01	RNF13	ENST00000467996.1,ENST00000474348.1,ENST00000361785.6,ENST00000344229.3,ENST00000482083.3,ENST00000467977.1,ENST00000392894.3,ENST00000491086.1	chr3	149638920:149639014:149677842:149677923:149678526:149678537,	149677843	149677923	149677864	149677864	Frame_Shift_Del	C	-	p.A241fs
LIHC	TCGA-DD-A3A0-01	EIF2A	ENST00000494558.1	chr3	150276174:150276249:150281301:150281401:150282085:150282164,	150281302	150281401	150281352	150281352	Frame_Shift_Del	A	-	p.K115fs
LIHC	TCGA-DD-A3A0-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877769	150877769	Frame_Shift_Del	G	-	p.G330fs
LIHC	TCGA-DD-A3A0-01	MED12L	ENST00000488092.1	chr3	151112443:151112655:151134099:151134210:151148086:151148168,	151134100	151134210	151134136	151134136	Frame_Shift_Del	C	-	p.P2077fs
LIHC	TCGA-DD-A3A0-01	MBNL1	ENST00000485910.1,ENST00000465907.2,ENST00000282488.7,ENST00000545754.1	chr3	152017986:152018156:152132729:152132900:152150505:152150706,151986751:151986881:152132729:152132900:152150505:152150706,152017986:152018156:152132729:152132900:152163070:152163263,	152132730	152132900	152132851	152132851	Frame_Shift_Del	A	-	p.Q99fs
LIHC	TCGA-DD-A3A0-01	MBNL1	ENST00000493459.1,ENST00000463374.1,ENST00000282486.6,ENST00000498502.1	chr3	152163070:152163328:152164492:152164546:152165408:152165562,	152164493	152164546	152164534	152164534	Frame_Shift_Del	A	-	p.A283fs
LIHC	TCGA-DD-A3A0-01	MBNL1	ENST00000485910.1,ENST00000282488.7,ENST00000355460.2	chr3	152163070:152163328:152165408:152165562:152173330:152173366,152163070:152163328:152165408:152165562:152177059:152177091,152163070:152163328:152165408:152165562:152174055:152174150,	152165409	152165562	152165441	152165441	Frame_Shift_Del	A	-	p.P298fs
LIHC	TCGA-DD-A3A0-01	DHX36	ENST00000481941.1,ENST00000496811.1,ENST00000544526.1,ENST00000329463.5,ENST00000481332.1,ENST00000308361.6	chr3	154002602:154002776:154006654:154006753:154007497:154007615,	154006655	154006753	154006724	154006724	Frame_Shift_Del	A	-	p.F654fs
LIHC	TCGA-DD-A3A0-01	DHX36	ENST00000481941.1,ENST00000496811.1,ENST00000544526.1,ENST00000329463.5,ENST00000308361.6	chr3	154018382:154018485:154018775:154018916:154021117:154021199,	154018776	154018916	154018908	154018908	Frame_Shift_Del	G	-	p.P409fs
LIHC	TCGA-DD-A3A0-01	MME	ENST00000462745.1,ENST00000492661.1,ENST00000493237.1,ENST00000360490.2,ENST00000460393.1	chr3	154859779:154859916:154860025:154860119:154861231:154861360,	154860026	154860119	154860088	154860088	Frame_Shift_Del	C	-	p.T386fs
LIHC	TCGA-DD-A3A0-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000469040.1,ENST00000334686.6,ENST00000494598.1	chr3	155211929:155212037:155212126:155212306:155215108:155215206,	155212127	155212306	155212216	155212216	Frame_Shift_Del	T	-	p.K632fs
LIHC	TCGA-DD-A3A0-01	KCNAB1	ENST00000302490.8,ENST00000389634.5	chr3	156009708:156009917:156139404:156139448:156170687:156170725,	156139405	156139448	156139431	156139431	Frame_Shift_Del	T	-	p.V83fs
LIHC	TCGA-DD-A3A0-01	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156395741	156395741	Frame_Shift_Del	A	-	p.L85fs
LIHC	TCGA-DD-A3A0-01	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156396208	156396208	Frame_Shift_Del	A	-	p.E241fs
LIHC	TCGA-DD-A3A0-01	RSRC1	ENST00000480119.1	chr3	157841660:157841780:157920860:157921034:158015827:158015864,157841654:157841780:157920860:157921034:157943445:157943522,	157920861	157921034	157920905	157920905	Frame_Shift_Del	A	-	p.E122fs
LIHC	TCGA-DD-A3A0-01	SMC4	ENST00000465563.1,ENST00000469858.1,ENST00000344722.5,ENST00000489573.1,ENST00000462787.1,ENST00000360111.2,ENST00000497984.1,ENST00000357388.3,ENST00000469762.1	chr3	160129707:160129765:160130113:160130241:160131260:160131272,160129809:160129872:160130113:160130241:160130317:160130637,160129809:160129872:160130113:160130241:160131260:160131272,	160130114	160130241	160130142	160130142	Frame_Shift_Del	A	-	p.E294fs
LIHC	TCGA-DD-A3A0-01	SMC4	ENST00000468653.1	chr3	160129809:160129872:160130113:160130637:160131260:160131272,	160130114	160130637	160130142	160130142	Frame_Shift_Del	A	-	p.E294fs
LIHC	TCGA-DD-A3A0-01	NMD3	ENST00000472947.1,ENST00000351193.2,ENST00000460469.1	chr3	160967241:160967348:160968043:160968114:160968567:160968678,	160968044	160968114	160968092	160968092	Frame_Shift_Del	A	-	p.R453fs
LIHC	TCGA-DD-A3A0-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548296	165548296	Frame_Shift_Del	C	-	p.V176fs
LIHC	TCGA-DD-A3A0-01	ZBBX	ENST00000307529.5,ENST00000455345.2,ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167016092:167016246:167023430:167023738:167031761:167031904,	167023431	167023738	167023636	167023636	Frame_Shift_Del	T	-	p.K507fs
LIHC	TCGA-DD-A3A0-01	SERPINI2	ENST00000471111.1,ENST00000476257.1,ENST00000461846.1,ENST00000264677.4	chr3	167167103:167167190:167170723:167170821:167182993:167183186,	167170724	167170821	167170783	167170783	Frame_Shift_Del	A	-	p.L302fs
LIHC	TCGA-DD-A3A0-01	PDCD10	ENST00000470131.1,ENST00000492396.1,ENST00000497056.2,ENST00000461494.1,ENST00000475915.2,ENST00000392750.2,ENST00000473645.2	chr3	167402126:167402177:167405021:167405104:167405402:167405481,	167405022	167405104	167405058	167405058	Frame_Shift_Del	A	-	p.F174fs
LIHC	TCGA-DD-A3A0-01	MYNN	ENST00000392733.1,ENST00000602391.1	chr3	169500252:169500431:169501264:169501348:169502409:169502464,169500252:169500431:169501264:169501348:169501517:169501537,	169501265	169501348	169501302	169501302	Frame_Shift_Del	T	-	p.S479fs
LIHC	TCGA-DD-A3A0-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514602	169514602	Frame_Shift_Del	T	-	p.N248fs
LIHC	TCGA-DD-A3A0-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514647	169514647	Frame_Shift_Del	T	-	p.N233fs
LIHC	TCGA-DD-A3A0-01	SEC62	ENST00000480708.1	chr3	169706027:169706147:169710381:169710889:169711442:169711619,	169710382	169710889	169710434	169710434	Frame_Shift_Del	C	-	p.H261fs
LIHC	TCGA-DD-A3A0-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998178	169998178	Frame_Shift_Del	T	-	p.V290fs
LIHC	TCGA-DD-A3A0-01	SLC2A2	ENST00000382808.4,ENST00000497642.1,ENST00000314251.3,ENST00000469787.1	chr3	170715543:170715892:170715981:170716185:170716853:170716955,	170715982	170716185	170716076	170716076	Frame_Shift_Del	A	-	p.F427fs
LIHC	TCGA-DD-A3A0-01	TNIK	ENST00000488470.1,ENST00000341852.6,ENST00000436636.2,ENST00000357327.5	chr3	170819237:170819422:170824971:170824995:170825853:170825951,	170824972	170824995	170824984	170824984	Frame_Shift_Del	T	-	p.K798fs
LIHC	TCGA-DD-A3A0-01	TNIK	ENST00000538048.1,ENST00000460047.1,ENST00000488470.1,ENST00000341852.6,ENST00000284483.8,ENST00000475336.1,ENST00000470834.1,ENST00000369326.5,ENST00000436636.2,ENST00000468757.1,ENST00000357327.5	chr3	170875339:170875453:170879058:170879125:170884883:170885059,	170879059	170879125	170879068	170879068	Frame_Shift_Del	C	-	p.G336fs
LIHC	TCGA-DD-A3A0-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5,ENST00000342215.6,ENST00000471075.1	chr3	171392289:171392403:171394504:171394623:171395355:171395484,	171394505	171394623	171394597	171394597	Frame_Shift_Del	G	-	p.R637fs
LIHC	TCGA-DD-A3A0-01	FNDC3B	ENST00000469491.1,ENST00000415807.2,ENST00000443501.1,ENST00000416957.1,ENST00000336824.4	chr3	171944660:171944737:171965322:171965566:171969049:171969246,	171965323	171965566	171965431	171965431	Frame_Shift_Del	C	-	p.P125fs
LIHC	TCGA-DD-A3A0-01	NCEH1	ENST00000421723.1,ENST00000543711.1	chr3	172353705:172353877:172363412:172363482:172428636:172428842,	172363413	172363482	172363439	172363439	Frame_Shift_Del	T	-	p.E137fs
LIHC	TCGA-DD-A3A0-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1	chr3	174951720:174951994:174974199:174974319:175041963:175042114,	174974200	174974319	174974259	174974259	Frame_Shift_Del	A	-	p.I293fs
LIHC	TCGA-DD-A3A0-01	NAALADL2	ENST00000473253.1,ENST00000454872.1	chr3	175041963:175042114:175165016:175165160:175181188:175181281,	175165017	175165160	175165079	175165079	Frame_Shift_Del	C	-	p.P385fs
LIHC	TCGA-DD-A3A0-01	PIK3CA	ENST00000263967.3	chr3	178947791:178947909:178948012:178948164:178951881:178957881,	178948013	178948164	178948055	178948055	Frame_Shift_Del	A	-	p.K944fs
LIHC	TCGA-DD-A3A0-01	MFN1	ENST00000480636.1	chr3	179095131:179095236:179096128:179096602:179103356:179103509,	179096129	179096602	179096194	179096194	Frame_Shift_Del	A	-	p.V465fs
LIHC	TCGA-DD-A3A0-01	MFN1	ENST00000480636.1	chr3	179095131:179095236:179096128:179096602:179103356:179103509,	179096129	179096602	179096543	179096543	Frame_Shift_Del	T	-	p.F535fs
LIHC	TCGA-DD-A3A0-01	PEX5L	ENST00000263962.8,ENST00000465751.1,ENST00000476138.1,ENST00000467460.1,ENST00000463761.1	chr3	179597753:179597911:179605460:179605572:179615929:179615998,	179605461	179605572	179605542	179605542	Frame_Shift_Del	G	-	p.L78fs
LIHC	TCGA-DD-A3A0-01	TTC14	ENST00000465625.1	chr3	180325435:180325553:180326488:180326598:180327417:180327791,180325950:180326059:180326488:180326598:180327417:180327791,	180326489	180326598	180326546	180326546	Frame_Shift_Del	A	-	p.K450fs
LIHC	TCGA-DD-A3A0-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372604	180372604	Frame_Shift_Del	T	-	p.K376fs
LIHC	TCGA-DD-A3A0-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372658	180372658	Frame_Shift_Del	C	-	p.G358fs
LIHC	TCGA-DD-A3A0-01	FXR1	ENST00000357559.4,ENST00000491062.1,ENST00000445140.2,ENST00000468861.1,ENST00000465551.1,ENST00000472339.1,ENST00000480918.1,ENST00000469882.1,ENST00000475315.1,ENST00000484958.1,ENST00000305586.7	chr3	180666134:180666283:180666508:180666602:180667014:180667038,	180666509	180666602	180666565	180666565	Frame_Shift_Del	T	-	p.I159fs
LIHC	TCGA-DD-A3A0-01	FXR1	ENST00000357559.4,ENST00000491062.1,ENST00000445140.2,ENST00000468861.1,ENST00000472339.1,ENST00000480918.1,ENST00000475315.1,ENST00000305586.7	chr3	180669117:180669256:180671549:180671628:180675606:180675716,	180671550	180671628	180671579	180671579	Frame_Shift_Del	T	-	p.G277fs
LIHC	TCGA-DD-A3A0-01	DNAJC19	ENST00000478723.1,ENST00000479269.1,ENST00000486355.1,ENST00000382564.2	chr3	180703713:180703784:180705810:180705884:180705965:180706017,180704785:180704810:180705810:180705884:180707387:180707491,180704785:180704810:180705810:180705884:180705965:180706017,	180705811	180705884	180705829	180705829	Frame_Shift_Del	A	-	p.F37fs
LIHC	TCGA-DD-A3A0-01	ATP11B	ENST00000323116.5,ENST00000493826.1	chr3	182538047:182538164:182545907:182545997:182547459:182547540,	182545908	182545997	182545931	182545931	Frame_Shift_Del	A	-	p.P56fs
LIHC	TCGA-DD-A3A0-01	ATP11B	ENST00000323116.5,ENST00000498086.1	chr3	182575665:182575816:182576949:182577147:182583243:182583486,	182576950	182577147	182576979	182576979	Frame_Shift_Del	T	-	p.A344fs
LIHC	TCGA-DD-A3A0-01	MCCC1	ENST00000495767.1,ENST00000497830.1,ENST00000265594.4,ENST00000539926.1,ENST00000492597.1,ENST00000476176.1	chr3	182751787:182751865:182755005:182755222:182756813:182756923,	182755006	182755222	182755209	182755209	Frame_Shift_Del	T	-	p.H355fs
LIHC	TCGA-DD-A3A0-01	MCCC1	ENST00000486226.1	chr3	182804480:182804576:182810196:182810333:182812346:182812393,182808723:182808819:182810196:182810333:182812346:182812393,	182810197	182810333	182810280	182810280	Frame_Shift_Del	C	-	p.V64fs
LIHC	TCGA-DD-A3A0-01	YEATS2	ENST00000305135.5	chr3	183469860:183470041:183471913:183472153:183474315:183474477,	183471914	183472153	183472018	183472018	Frame_Shift_Del	T	-	p.F419fs
LIHC	TCGA-DD-A3A0-01	YEATS2	ENST00000305135.5	chr3	183471913:183472153:183474315:183474477:183476649:183476753,	183474316	183474477	183474319	183474319	Frame_Shift_Del	C	-	p.S465fs
LIHC	TCGA-DD-A3A0-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000435888.1	chr3	183584412:183584553:183585652:183585848:183602509:183602515,	183585653	183585848	183585774	183585774	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A3A0-01	ABCC5	ENST00000437205.1,ENST00000334444.6	chr3	183665111:183665298:183667540:183667669:183667759:183667913,	183667541	183667669	183667589	183667589	Frame_Shift_Del	C	-	p.G1060fs
LIHC	TCGA-DD-A3A0-01	VPS8	ENST00000436792.2,ENST00000446204.2,ENST00000437079.3	chr3	184529983:184530013:184542332:184542573:184543950:184544019,	184542333	184542573	184542562	184542562	Frame_Shift_Del	A	-	p.K48fs
LIHC	TCGA-DD-A3A0-01	IGF2BP2	ENST00000382199.2,ENST00000457616.2,ENST00000421047.2	chr3	185376128:185376197:185390328:185390457:185393083:185393219,	185390329	185390457	185390353	185390353	Frame_Shift_Del	G	-	p.P392fs
LIHC	TCGA-DD-A3A0-01	TRA2B	ENST00000485530.1	chr3	185643251:185643414:185644388:185644522:185649364:185649406,185643251:185643414:185644388:185644522:185655612:185655775,	185644389	185644522	185644475	185644475	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-DD-A3A0-01	ETV5	ENST00000537818.1,ENST00000306376.5,ENST00000434744.1,ENST00000480706.1	chr3	185766603:185766649:185769818:185769920:185774863:185775033,	185769819	185769920	185769835	185769835	Frame_Shift_Del	T	-	p.K432fs
LIHC	TCGA-DD-A3A0-01	ETV5	ENST00000537818.1,ENST00000306376.5,ENST00000434744.1,ENST00000480706.1	chr3	185766603:185766649:185769818:185769920:185774863:185775033,	185769819	185769920	185769904	185769904	Frame_Shift_Del	C	-	p.G409fs
LIHC	TCGA-DD-A3A0-01	AHSG	ENST00000411641.2,ENST00000273784.5	chr3	186334975:186335139:186336324:186336426:186337645:186337729,	186336325	186336426	186336382	186336382	Frame_Shift_Del	A	-	p.K211fs
LIHC	TCGA-DD-A3A0-01	HRG	ENST00000232003.4	chr3	186390579:186390656:186392877:186392979:186394835:186396020,	186392878	186392979	186392941	186392941	Frame_Shift_Del	A	-	p.K235fs
LIHC	TCGA-DD-A3A0-01	KNG1	ENST00000447445.1,ENST00000265023.4	chr3	186435366:186435526:186437893:186438004:186440225:186440310,	186437894	186438004	186437938	186437938	Frame_Shift_Del	G	-	p.E80fs
LIHC	TCGA-DD-A3A0-01	RFC4	ENST00000433496.1	chr3	186507688:186507853:186507930:186508044:186508114:186508195,186507688:186507853:186507930:186508044:186509513:186509639,	186507931	186508044	186507937	186507937	Frame_Shift_Del	T	-	p.K330fs
LIHC	TCGA-DD-A3A0-01	ST6GAL1	ENST00000455441.1	chr3	186760895:186761098:186769036:186769134:186790636:186790689,186681572:186681714:186769036:186769134:186790636:186790689,	186769037	186769134	186769104	186769104	Frame_Shift_Del	A	-	p.T225fs
LIHC	TCGA-DD-A3A0-01	BCL6	ENST00000438077.1,ENST00000450123.2,ENST00000232014.4,ENST00000406870.2,ENST00000430339.1	chr3	187449567:187449718:187451320:187451491:187452656:187452670,	187451321	187451491	187451416	187451416	Frame_Shift_Del	A	-	p.L22fs
LIHC	TCGA-DD-A3A0-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327247	188327247	Frame_Shift_Del	T	-	p.I243fs
LIHC	TCGA-DD-A3A0-01	TPRG1	ENST00000433971.1,ENST00000345063.3,ENST00000425670.1	chr3	188933088:188933172:188956521:188956698:189028174:189028328,	188956522	188956698	188956693	188956693	Frame_Shift_Del	G	-	p.L158fs
LIHC	TCGA-DD-A3A0-01	TP63	ENST00000354600.5,ENST00000392463.2,ENST00000440651.2,ENST00000456148.1,ENST00000449992.1,ENST00000392460.3,ENST00000382063.4,ENST00000264731.3	chr3	189590647:189590784:189604182:189604340:189607128:189607273,	189604183	189604340	189604282	189604282	Frame_Shift_Del	C	-	p.N483fs
LIHC	TCGA-DD-A3A0-01	CLDN16	ENST00000264734.2	chr3	190122589:190122715:190126102:190126294:190127691:190127797,	190126103	190126294	190126249	190126249	Frame_Shift_Del	T	-	p.F247fs
LIHC	TCGA-DD-A3A0-01	CCDC50	ENST00000392456.3	chr3	191087707:191087825:191092850:191093378:191097947:191098063,	191092851	191093378	191093308	191093308	Frame_Shift_Del	A	-	p.R302fs
LIHC	TCGA-DD-A3A0-01	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000450950.2	chr3	193182728:193182917:193183813:193183971:193185104:193185137,	193183814	193183971	193183897	193183897	Frame_Shift_Del	C	-	p.D397fs
LIHC	TCGA-DD-A3A0-01	ATP13A4	ENST00000392443.3	chr3	193182728:193182917:193183870:193183971:193185104:193185137,	193183871	193183971	193183897	193183897	Frame_Shift_Del	C	-	p.D397fs
LIHC	TCGA-DD-A3A0-01	OPA1	ENST00000434811.1,ENST00000495476.1,ENST00000497189.1,ENST00000392438.3,ENST00000361150.2,ENST00000361715.2,ENST00000361908.3,ENST00000361510.2,ENST00000361828.2	chr3	193349400:193349454:193353206:193353311:193354983:193355001,	193353207	193353311	193353238	193353238	Frame_Shift_Del	A	-	p.E292fs
LIHC	TCGA-DD-A3A0-01	LRRC15	ENST00000428839.1	chr3	194079600:194081775:194084084:194084141:194090389:194090460,	194084085	194084141	194084092	194084092	Frame_Shift_Del	A	-	p.L3fs
LIHC	TCGA-DD-A3A0-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194140607:194140696:194146070:194146258:194147803:194147981,	194146071	194146258	194146150	194146150	Frame_Shift_Del	A	-	p.F1078fs
LIHC	TCGA-DD-A3A0-01	TMEM44	ENST00000381975.3	chr3	194309257:194309368:194325015:194325170:194331644:194331707,	194325016	194325170	194325125	194325125	Frame_Shift_Del	C	-	p.G403fs
LIHC	TCGA-DD-A3A0-01	TMEM44	ENST00000392432.2,ENST00000347147.4,ENST00000477651.1,ENST00000452358.1	chr3	194309257:194309368:194325015:194325174:194331644:194331707,	194325016	194325174	194325125	194325125	Frame_Shift_Del	C	-	p.G403fs
LIHC	TCGA-DD-A3A0-01	TMEM44	ENST00000429560.1	chr3	194309257:194309368:194325042:194325170:194331644:194331707,	194325043	194325170	194325125	194325125	Frame_Shift_Del	C	-	p.G403fs
LIHC	TCGA-DD-A3A0-01	TMEM44	ENST00000452358.1	chr3	194331654:194331749:194336297:194336399:194343952:194344039,	194336298	194336399	194336305	194336305	Frame_Shift_Del	T	-	p.N349fs
LIHC	TCGA-DD-A3A0-01	LSG1	ENST00000475763.1,ENST00000265245.5,ENST00000460584.1	chr3	194362901:194362976:194365301:194365475:194366892:194366972,	194365302	194365475	194365309	194365309	Frame_Shift_Del	A	-	p.F597fs
LIHC	TCGA-DD-A3A0-01	ACAP2	ENST00000439758.1,ENST00000326793.6,ENST00000423531.1	chr3	195053810:195053852:195057660:195057705:195063199:195063338,	195057661	195057705	195057684	195057684	Frame_Shift_Del	T	-	p.R185fs
LIHC	TCGA-DD-A3A0-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452634	195452634	Frame_Shift_Del	C	-	p.A216fs
LIHC	TCGA-DD-A3A0-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453386	195453386	Frame_Shift_Del	C	-	p.P468fs
LIHC	TCGA-DD-A3A0-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195509764	195509764	Frame_Shift_Del	G	-	p.P2896fs
LIHC	TCGA-DD-A3A0-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516276	195516276	Frame_Shift_Del	C	-	p.G725fs
LIHC	TCGA-DD-A3A0-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196083507:196083717:196088714:196088794:196089164:196089415,	196088715	196088794	196088753	196088753	Frame_Shift_Del	T	-	p.R424fs
LIHC	TCGA-DD-A3A0-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196089164:196089558:196094898:196095026:196096291:196096382,	196094899	196095026	196094917	196094917	Frame_Shift_Del	G	-	p.P272fs
LIHC	TCGA-DD-A3A0-01	PIGX	ENST00000314118.4,ENST00000426755.1,ENST00000453218.2,ENST00000392391.3	chr3	196449285:196449427:196454793:196455007:196457862:196457963,	196454794	196455007	196454828	196454828	Frame_Shift_Del	C	-	p.A77fs
LIHC	TCGA-DD-A3A0-01	PAK2	ENST00000426668.1,ENST00000327134.3	chr3	196539609:196539722:196541321:196541439:196544927:196545027,	196541322	196541439	196541368	196541368	Frame_Shift_Del	G	-	p.G329fs
LIHC	TCGA-DD-A3A0-01	PAK2	ENST00000327134.3	chr3	196544927:196545027:196547241:196547438:196554066:196554204,	196547242	196547438	196547351	196547351	Frame_Shift_Del	C	-	p.G421fs
LIHC	TCGA-DD-A3A0-01	SENP5	ENST00000323460.5	chr3	196594815:196594944:196612021:196613565:196626536:196626642,	196612022	196613565	196612143	196612143	Frame_Shift_Del	T	-	p.F31fs
LIHC	TCGA-DD-A3A0-01	SENP5	ENST00000323460.5	chr3	196594815:196594944:196612021:196613565:196626536:196626642,	196612022	196613565	196612452	196612452	Frame_Shift_Del	A	-	p.K134fs
LIHC	TCGA-DD-A3A0-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000475394.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000422288.1,ENST00000346964.2,ENST00000469371.1,ENST00000357674.4	chr3	196778447:196778539:196786759:196786869:196792146:196792309,	196786760	196786869	196786777	196786777	Frame_Shift_Del	T	-	p.K855fs
LIHC	TCGA-DD-A3A0-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000475394.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000422288.1,ENST00000346964.2,ENST00000469371.1,ENST00000357674.4	chr3	196778447:196778539:196786759:196786869:196792146:196792309,	196786760	196786869	196786838	196786838	Frame_Shift_Del	T	-	p.N835fs
LIHC	TCGA-DD-A3A0-01	DLG1	ENST00000450955.1,ENST00000346964.2,ENST00000357674.4	chr3	196803456:196803556:196807921:196807988:196812450:196812529,	196807922	196807988	196807957	196807957	Frame_Shift_Del	T	-	p.T657fs
LIHC	TCGA-DD-A3A0-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000392381.3,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4	chr3	196817782:196817897:196831773:196831876:196842797:196842954,	196831774	196831876	196831818	196831818	Frame_Shift_Del	T	-	p.N534fs
LIHC	TCGA-DD-A3A0-01	LRCH3	ENST00000536618.1,ENST00000438796.2,ENST00000425562.2,ENST00000334859.4	chr3	197559067:197559188:197562544:197562693:197566191:197566268,	197562545	197562693	197562619	197562619	Frame_Shift_Del	C	-	p.P393fs
LIHC	TCGA-DD-A3A0-01	IQCG	ENST00000490748.1,ENST00000478903.1,ENST00000265239.6,ENST00000455191.1	chr3	197616283:197616585:197618316:197618418:197619498:197619630,	197618317	197618418	197618375	197618375	Frame_Shift_Del	T	-	p.K380fs
LIHC	TCGA-DD-A3A0-01	ZNF141	ENST00000240499.7,ENST00000512994.1	chr4	337570:337697:338123:338219:351996:352339,337570:337697:338123:338219:366452:366796,	338124	338219	338170	338170	Frame_Shift_Del	A	-	p.R59fs
LIHC	TCGA-DD-A3A0-01	PIGG	ENST00000506402.1,ENST00000310340.5,ENST00000296306.7,ENST00000503111.1,ENST00000453061.2,ENST00000504346.1,ENST00000509768.1	chr4	494250:494390:499506:499716:501193:501327,	499507	499716	499665	499665	Frame_Shift_Del	T	-	p.H173fs
LIHC	TCGA-DD-A3A0-01	PIGG	ENST00000536264.1,ENST00000506402.1,ENST00000310340.5,ENST00000383028.4,ENST00000453061.2,ENST00000504346.1,ENST00000504187.1,ENST00000509768.1	chr4	502617:502759:509761:509974:514844:515016,	509762	509974	509841	509841	Frame_Shift_Del	A	-	p.P327fs
LIHC	TCGA-DD-A3A0-01	PIGG	ENST00000536264.1,ENST00000506402.1,ENST00000504187.1	chr4	509761:509974:514844:515016:515448:515730,	514845	515016	514853	514853	Frame_Shift_Del	T	-	p.F375fs
LIHC	TCGA-DD-A3A0-01	PIGG	ENST00000506898.1,ENST00000383028.4,ENST00000453061.2,ENST00000504346.1,ENST00000509768.1	chr4	509761:509974:514844:515062:515448:515730,	514845	515062	514853	514853	Frame_Shift_Del	T	-	p.F375fs
LIHC	TCGA-DD-A3A0-01	PIGG	ENST00000310340.5	chr4	509761:509974:514844:515038:515448:515730,	514845	515038	514853	514853	Frame_Shift_Del	T	-	p.F375fs
LIHC	TCGA-DD-A3A0-01	PDE6B	ENST00000429163.2,ENST00000496514.1,ENST00000255622.6	chr4	652740:652806:654255:654402:655922:656030,	654256	654402	654393	654393	Frame_Shift_Del	C	-	p.I535fs
LIHC	TCGA-DD-A3A0-01	PCGF3	ENST00000470161.2,ENST00000440452.1,ENST00000521023.2,ENST00000505655.2,ENST00000362003.5,ENST00000430644.1	chr4	738387:738476:755066:755204:758771:758852,	755067	755204	755175	755175	Frame_Shift_Del	A	-	p.K192fs
LIHC	TCGA-DD-A3A0-01	GAK	ENST00000511980.1	chr4	844723:844872:845537:845762:853393:853510,844723:844872:845537:845762:853149:853281,	845538	845762	845747	845747	Frame_Shift_Del	A	-	p.F1100fs
LIHC	TCGA-DD-A3A0-01	GAK	ENST00000511163.1,ENST00000314167.4	chr4	870877:870995:871402:871597:875694:875828,	871403	871597	871446	871446	Frame_Shift_Del	C	-	p.D605fs
LIHC	TCGA-DD-A3A0-01	GAK	ENST00000511163.1	chr4	891849:891946:898424:898567:905460:905529,891849:891946:898424:898567:907394:907456,891849:891946:898424:898567:925830:926008,	898425	898567	898481	898481	Frame_Shift_Del	G	-	p.R157fs
LIHC	TCGA-DD-A3A0-01	CTBP1	ENST00000382952.3,ENST00000504092.1,ENST00000290921.6	chr4	1207265:1207393:1208130:1208261:1209778:1209993,	1208131	1208261	1208228	1208228	Frame_Shift_Del	G	-	p.R255fs
LIHC	TCGA-DD-A3A0-01	CTBP1	ENST00000510739.1	chr4	1207265:1207393:1207978:1208261:1209778:1209993,	1207979	1208261	1208228	1208228	Frame_Shift_Del	G	-	p.R255fs
LIHC	TCGA-DD-A3A0-01	SLBP	ENST00000429429.2,ENST00000483348.1,ENST00000488267.1,ENST00000489418.1,ENST00000318386.4	chr4	1696500:1696567:1697928:1698078:1701290:1701428,	1697929	1698078	1697969	1697969	Frame_Shift_Del	A	-	p.W197fs
LIHC	TCGA-DD-A3A0-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1729516	1729516	Frame_Shift_Del	G	-	p.L129fs
LIHC	TCGA-DD-A3A0-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1729645	1729645	Frame_Shift_Del	A	-	p.G172fs
LIHC	TCGA-DD-A3A0-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730308	1730308	Frame_Shift_Del	C	-	p.D393fs
LIHC	TCGA-DD-A3A0-01	NELFA	ENST00000431323.1	chr4	1991434:1991596:1993270:1993457:2010476:2010562,	1993271	1993457	1993273	1993273	Frame_Shift_Del	T	-	p.K138fs
LIHC	TCGA-DD-A3A0-01	NELFA	ENST00000411638.2	chr4	1991434:1991596:1993270:1993442:2010476:2010562,	1993271	1993442	1993273	1993273	Frame_Shift_Del	T	-	p.K138fs
LIHC	TCGA-DD-A3A0-01	POLN	ENST00000511885.2,ENST00000382865.1,ENST00000515357.1	chr4	2159584:2159638:2160881:2160938:2172405:2172501,	2160882	2160938	2160895	2160895	Frame_Shift_Del	A	-	p.L533fs
LIHC	TCGA-DD-A3A0-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000355842.3,ENST00000398123.2,ENST00000264758.7,ENST00000446856.1,ENST00000509039.1,ENST00000503169.1,ENST00000511797.1,ENST00000398125.1,ENST00000503455.2,ENST00000508684.1	chr4	2877622:2877837:2883624:2883787:2886241:2886296,	2883625	2883787	2883672	2883672	Frame_Shift_Del	G	-	p.K81fs
LIHC	TCGA-DD-A3A0-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000355842.3,ENST00000446856.1	chr4	2900985:2901162:2906490:2906742:2909469:2909540,	2906491	2906742	2906542	2906542	Frame_Shift_Del	A	-	p.K406fs
LIHC	TCGA-DD-A3A0-01	ADD1	ENST00000398123.2,ENST00000264758.7,ENST00000514940.1,ENST00000398125.1,ENST00000503455.2	chr4	2900985:2901162:2906490:2906835:2909469:2909540,	2906491	2906835	2906542	2906542	Frame_Shift_Del	A	-	p.K406fs
LIHC	TCGA-DD-A3A0-01	ADD1	ENST00000513762.1	chr4	2909556:2909571:2910241:2911158:2916610:2916767,	2910242	2911158	2910294	2910294	Frame_Shift_Del	T	-	p.V523fs
LIHC	TCGA-DD-A3A0-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000398123.2,ENST00000264758.7,ENST00000514940.1,ENST00000446856.1,ENST00000541051.1,ENST00000398125.1,ENST00000503455.2	chr4	2909556:2909571:2910241:2910331:2916610:2916767,	2910242	2910331	2910294	2910294	Frame_Shift_Del	T	-	p.V523fs
LIHC	TCGA-DD-A3A0-01	HTT	ENST00000355072.5	chr4	3123126:3123159:3124615:3124663:3127275:3127356,	3124616	3124663	3124653	3124653	Frame_Shift_Del	A	-	p.R437fs
LIHC	TCGA-DD-A3A0-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3184110:3184197:3188323:3188446:3189377:3189613,	3188324	3188446	3188382	3188382	Frame_Shift_Del	C	-	p.A1642fs
LIHC	TCGA-DD-A3A0-01	HGFAC	ENST00000511533.1,ENST00000382774.3	chr4	3444776:3444873:3445067:3445147:3445765:3445888,	3445068	3445147	3445106	3445106	Frame_Shift_Del	G	-	p.W145fs
LIHC	TCGA-DD-A3A0-01	DOK7	ENST00000340083.5,ENST00000389653.2	chr4	3478068:3478269:3487265:3487385:3491403:3491523,	3487266	3487385	3487364	3487364	Frame_Shift_Del	G	-	p.G211fs
LIHC	TCGA-DD-A3A0-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344408.5	chr4	5564515:5564842:5566984:5567086:5570170:5570367,	5566985	5567086	5567050	5567050	Frame_Shift_Del	T	-	p.K1118fs
LIHC	TCGA-DD-A3A0-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5811244:5811338:5812065:5812177:5812679:5813547,	5812066	5812177	5812113	5812113	Frame_Shift_Del	G	-	p.G944fs
LIHC	TCGA-DD-A3A0-01	CRMP1	ENST00000512574.1,ENST00000324989.7,ENST00000511535.1,ENST00000397890.2	chr4	5857869:5858034:5862752:5862937:5868394:5868483,	5862753	5862937	5862860	5862860	Frame_Shift_Del	C	-	p.G183fs
LIHC	TCGA-DD-A3A0-01	WFS1	ENST00000506588.1,ENST00000226760.1	chr4	6271576:6271741:6279177:6279414:6288819:6288902,	6279178	6279414	6279256	6279256	Frame_Shift_Del	C	-	p.S25fs
LIHC	TCGA-DD-A3A0-01	MAN2B2	ENST00000505907.1,ENST00000285599.3	chr4	6590771:6590887:6594899:6595077:6596260:6596459,	6594900	6595077	6594952	6594952	Frame_Shift_Del	G	-	p.G245fs
LIHC	TCGA-DD-A3A0-01	MAN2B2	ENST00000505907.1,ENST00000285599.3,ENST00000504248.1	chr4	6611524:6611777:6612606:6612717:6612812:6613005,	6612607	6612717	6612700	6612700	Frame_Shift_Del	G	-	p.G785fs
LIHC	TCGA-DD-A3A0-01	TBC1D14	ENST00000448507.1	chr4	6911170:6911232:6925099:6925838:6969030:6969151,	6925100	6925838	6925679	6925679	Frame_Shift_Del	C	-	p.A188fs
LIHC	TCGA-DD-A3A0-01	SORCS2	ENST00000329016.9,ENST00000507866.2	chr4	7715966:7716100:7716909:7717038:7719738:7719910,	7716910	7717038	7717008	7717008	Frame_Shift_Del	C	-	p.A741fs
LIHC	TCGA-DD-A3A0-01	AFAP1	ENST00000420658.1,ENST00000513842.1,ENST00000382543.3	chr4	7780488:7780603:7783102:7783354:7787920:7788038,	7783103	7783354	7783294	7783294	Frame_Shift_Del	A	-	p.Y531fs
LIHC	TCGA-DD-A3A0-01	AFAP1	ENST00000358461.2,ENST00000420658.1,ENST00000360265.4,ENST00000382543.3	chr4	7820802:7820898:7840250:7840430:7844865:7845077,	7840251	7840430	7840421	7840421	Frame_Shift_Del	T	-	p.S187fs
LIHC	TCGA-DD-A3A0-01	SH3TC1	ENST00000245105.3	chr4	8201097:8201132:8206893:8207093:8211391:8211549,8201097:8201132:8206893:8207093:8211474:8211549,	8206894	8207093	8206966	8206966	Frame_Shift_Del	G	-	p.M15fs
LIHC	TCGA-DD-A3A0-01	SH3TC1	ENST00000508641.1,ENST00000539824.1,ENST00000515682.1,ENST00000507891.1,ENST00000245105.3	chr4	8217929:8217984:8218683:8218894:8219997:8220074,	8218684	8218894	8218754	8218754	Frame_Shift_Del	C	-	p.G157fs
LIHC	TCGA-DD-A3A0-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229297	8229297	Frame_Shift_Del	A	-	p.K550fs
LIHC	TCGA-DD-A3A0-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229520	8229520	Frame_Shift_Del	C	-	p.A624fs
LIHC	TCGA-DD-A3A0-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8230234	8230234	Frame_Shift_Del	T	-	p.L862fs
LIHC	TCGA-DD-A3A0-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8230258	8230258	Frame_Shift_Del	C	-	p.T870fs
LIHC	TCGA-DD-A3A0-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8230319	8230319	Frame_Shift_Del	G	-	p.K890fs
LIHC	TCGA-DD-A3A0-01	ACOX3	ENST00000503233.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8407681:8407770:8411938:8412082:8416018:8416108,	8411939	8412082	8412037	8412037	Frame_Shift_Del	C	-	p.V197fs
LIHC	TCGA-DD-A3A0-01	TRMT44	ENST00000511366.2	chr4	8475242:8475371:8477498:8481260:8494992:8495258,	8477499	8481260	8477696	8477696	Frame_Shift_Del	C	-	p.P748fs
LIHC	TCGA-DD-A3A0-01	WDR1	ENST00000502962.1,ENST00000502702.1,ENST00000382451.2,ENST00000499869.2,ENST00000382452.2	chr4	10076966:10077108:10078927:10079072:10079376:10079550,	10078928	10079072	10079057	10079057	Frame_Shift_Del	A	-	p.Y529fs
LIHC	TCGA-DD-A3A0-01	WDR1	ENST00000502962.1,ENST00000502702.1,ENST00000515743.1,ENST00000382451.2,ENST00000499869.2,ENST00000382452.2	chr4	10079376:10079550:10080514:10080625:10082980:10083068,	10080515	10080625	10080578	10080578	Frame_Shift_Del	G	-	p.P444fs
LIHC	TCGA-DD-A3A0-01	BOD1L1	ENST00000040738.5,ENST00000482713.1	chr4	13615819:13616434:13616935:13617126:13621566:13621691,	13616936	13617126	13617019	13617019	Frame_Shift_Del	A	-	p.L159fs
LIHC	TCGA-DD-A3A0-01	CPEB2	ENST00000507071.1,ENST00000509684.1,ENST00000382401.3,ENST00000259997.5,ENST00000345451.3,ENST00000538197.1,ENST00000541112.1,ENST00000442003.2,ENST00000382395.3	chr4	15060044:15060163:15060810:15060925:15063702:15063884,	15060811	15060925	15060882	15060882	Frame_Shift_Del	A	-	p.R884fs
LIHC	TCGA-DD-A3A0-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1	chr4	15572020:15572119:15575772:15575949:15581590:15581794,	15575773	15575949	15575849	15575849	Frame_Shift_Del	G	-	p.R1224fs
LIHC	TCGA-DD-A3A0-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1	chr4	15575772:15575949:15581590:15581794:15587779:15587869,	15581591	15581794	15581712	15581712	Frame_Shift_Del	T	-	p.V1298fs
LIHC	TCGA-DD-A3A0-01	FBXL5	ENST00000513163.1,ENST00000507700.1,ENST00000382358.4,ENST00000412094.2,ENST00000511441.1,ENST00000341285.3	chr4	15628495:15628578:15629507:15629656:15632288:15632414,	15629508	15629656	15629607	15629607	Frame_Shift_Del	T	-	p.K314fs
LIHC	TCGA-DD-A3A0-01	NCAPG	ENST00000514176.1,ENST00000513226.1	chr4	17812650:17812811:17813843:17814047:17814539:17814768,	17813844	17814047	17813860	17813860	Frame_Shift_Del	T	-	p.V43fs
LIHC	TCGA-DD-A3A0-01	NCAPG	ENST00000251496.2	chr4	17816896:17816981:17818883:17819076:17819561:17819711,	17818884	17819076	17818980	17818980	Frame_Shift_Del	A	-	p.E291fs
LIHC	TCGA-DD-A3A0-01	PACRGL	ENST00000503747.1,ENST00000508952.1	chr4	20706282:20706437:20709425:20709493:20711305:20711337,20706282:20706437:20709425:20709493:20714410:20714454,	20709426	20709493	20709474	20709474	Frame_Shift_Del	A	-	p.K86fs
LIHC	TCGA-DD-A3A0-01	DHX15	ENST00000336812.4	chr4	24534486:24534677:24538673:24538796:24541730:24541922,	24538674	24538796	24538783	24538783	Frame_Shift_Del	A	-	p.F600fs
LIHC	TCGA-DD-A3A0-01	SEPSECS	ENST00000302922.3,ENST00000514585.1,ENST00000382103.2,ENST00000358971.3	chr4	25127315:25127406:25128885:25128979:25146395:25146487,	25128886	25128979	25128952	25128952	Frame_Shift_Del	T	-	p.I352fs
LIHC	TCGA-DD-A3A0-01	SEPSECS	ENST00000302922.3,ENST00000514585.1,ENST00000382103.2,ENST00000358971.3	chr4	25146395:25146487:25146625:25146755:25153581:25153684,	25146626	25146755	25146666	25146666	Frame_Shift_Del	A	-	p.F298fs
LIHC	TCGA-DD-A3A0-01	SEPSECS	ENST00000302922.3,ENST00000514585.1,ENST00000382103.2,ENST00000358971.3	chr4	25146395:25146487:25146625:25146755:25153581:25153684,	25146626	25146755	25146706	25146706	Frame_Shift_Del	T	-	p.N285fs
LIHC	TCGA-DD-A3A0-01	SEPSECS	ENST00000382103.2	chr4	25158477:25158596:25160574:25160729:25161877:25162016,	25160575	25160729	25160641	25160641	Frame_Shift_Del	C	-	p.G68fs
LIHC	TCGA-DD-A3A0-01	PI4K2B	ENST00000264864.6,ENST00000512921.1	chr4	25258164:25258296:25260658:25260812:25262145:25262213,	25260659	25260812	25260786	25260786	Frame_Shift_Del	T	-	p.I295fs
LIHC	TCGA-DD-A3A0-01	ANAPC4	ENST00000510092.1,ENST00000315368.3	chr4	25411319:25411413:25415266:25415364:25415945:25416007,	25415267	25415364	25415310	25415310	Frame_Shift_Del	T	-	p.H523fs
LIHC	TCGA-DD-A3A0-01	ANAPC4	ENST00000510092.1,ENST00000315368.3,ENST00000515848.1	chr4	25418046:25418220:25419237:25419361:25419776:25419883,	25419238	25419361	25419263	25419263	Frame_Shift_Del	C	-	p.P701fs
LIHC	TCGA-DD-A3A0-01	SEL1L3	ENST00000399878.3,ENST00000509290.1,ENST00000264868.5,ENST00000502949.1	chr4	25769205:25769231:25769361:25769452:25777898:25777982,	25769362	25769452	25769415	25769415	Frame_Shift_Del	T	-	p.T903fs
LIHC	TCGA-DD-A3A0-01	ARAP2	ENST00000303965.4,ENST00000512804.1	chr4	36152521:36152666:36160351:36160486:36160952:36161127,	36160352	36160486	36160408	36160408	Frame_Shift_Del	A	-	p.L899fs
LIHC	TCGA-DD-A3A0-01	TBC1D1	ENST00000261439.4,ENST00000510573.2,ENST00000508802.1	chr4	38055819:38055959:38091552:38091738:38097549:38097711,	38091553	38091738	38091576	38091576	Frame_Shift_Del	C	-	p.P693fs
LIHC	TCGA-DD-A3A0-01	TBC1D1	ENST00000261439.4,ENST00000510573.2,ENST00000508802.1	chr4	38091552:38091738:38097549:38097711:38104619:38104778,	38097550	38097711	38097556	38097556	Frame_Shift_Del	A	-	p.E748fs
LIHC	TCGA-DD-A3A0-01	TBC1D1	ENST00000261439.4,ENST00000511238.1,ENST00000510573.2	chr4	38104668:38104778:38117330:38117575:38119653:38119813,	38117331	38117575	38117533	38117533	Frame_Shift_Del	G	-	p.M920fs
LIHC	TCGA-DD-A3A0-01	FAM114A1	ENST00000358869.2	chr4	38870086:38870167:38879691:38880047:38893363:38893416,	38879692	38880047	38879901	38879901	Frame_Shift_Del	C	-	p.P69fs
LIHC	TCGA-DD-A3A0-01	FAM114A1	ENST00000358869.2	chr4	38870086:38870167:38879691:38880047:38893363:38893416,	38879692	38880047	38880041	38880041	Frame_Shift_Del	T	-	p.N114fs
LIHC	TCGA-DD-A3A0-01	FAM114A1	ENST00000358869.2,ENST00000512889.1,ENST00000515037.1	chr4	38916541:38916694:38924390:38924514:38930862:38930904,	38924391	38924514	38924400	38924400	Frame_Shift_Del	T	-	p.F319fs
LIHC	TCGA-DD-A3A0-01	KLHL5	ENST00000508137.2	chr4	39064559:39064655:39077584:39077767:39082722:39082802,39046679:39046716:39077584:39077767:39082722:39082802,	39077585	39077767	39077685	39077685	Frame_Shift_Del	A	-	p.K163fs
LIHC	TCGA-DD-A3A0-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462464	39462464	Frame_Shift_Del	A	-	p.K36fs
LIHC	TCGA-DD-A3A0-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462551	39462551	Frame_Shift_Del	A	-	p.K63fs
LIHC	TCGA-DD-A3A0-01	UBE2K	ENST00000295963.6,ENST00000510934.1,ENST00000445950.2	chr4	39699758:39699922:39739039:39739133:39747371:39747430,39699947:39700010:39739039:39739133:39747371:39747430,	39739040	39739133	39739081	39739081	Frame_Shift_Del	T	-	p.N35fs
LIHC	TCGA-DD-A3A0-01	UBE2K	ENST00000503368.1	chr4	39747371:39747430:39757276:39757359:39776453:39776553,39699947:39700010:39757276:39757359:39776453:39776553,	39757277	39757359	39757336	39757336	Frame_Shift_Del	T	-	p.C92fs
LIHC	TCGA-DD-A3A0-01	PDS5A	ENST00000507020.1,ENST00000303538.8	chr4	39871013:39871082:39874605:39874764:39875908:39876020,	39874606	39874764	39874707	39874707	Frame_Shift_Del	A	-	p.S779fs
LIHC	TCGA-DD-A3A0-01	PDS5A	ENST00000303538.8,ENST00000503396.1	chr4	39900008:39900148:39900396:39900445:39902045:39902127,	39900397	39900445	39900419	39900419	Frame_Shift_Del	A	-	p.F536fs
LIHC	TCGA-DD-A3A0-01	CHRNA9	ENST00000310169.2	chr4	40339302:40339381:40350898:40351431:40355995:40356111,	40350899	40351431	40351307	40351307	Frame_Shift_Del	T	-	p.S258fs
LIHC	TCGA-DD-A3A0-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000510871.1,ENST00000514014.1	chr4	40427428:40428160:40434667:40434879:40439787:40440814,40427428:40428160:40434667:40434879:40438457:40438661,	40434668	40434879	40434773	40434773	Frame_Shift_Del	G	-	p.P410fs
LIHC	TCGA-DD-A3A0-01	RBM47	ENST00000510871.1	chr4	40434725:40434879:40438457:40438902:40439787:40440814,	40438458	40438902	40438525	40438525	Frame_Shift_Del	T	-	p.K421fs
LIHC	TCGA-DD-A3A0-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000514014.1	chr4	40434725:40434879:40438457:40438664:40439787:40440814,	40438458	40438664	40438525	40438525	Frame_Shift_Del	T	-	p.K421fs
LIHC	TCGA-DD-A3A0-01	RBM47	ENST00000510871.1	chr4	40434725:40434879:40438457:40438902:40439787:40440814,	40438458	40438902	40438589	40438589	Frame_Shift_Del	C	-	p.G400fs
LIHC	TCGA-DD-A3A0-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000514014.1	chr4	40434725:40434879:40438457:40438664:40439787:40440814,	40438458	40438664	40438589	40438589	Frame_Shift_Del	C	-	p.G400fs
LIHC	TCGA-DD-A3A0-01	LIMCH1	ENST00000313860.7,ENST00000508466.1,ENST00000503057.1,ENST00000509277.1	chr4	41687726:41687847:41689856:41689934:41691543:41691652,	41689857	41689934	41689885	41689885	Frame_Shift_Del	G	-	p.G989fs
LIHC	TCGA-DD-A3A0-01	TMEM33	ENST00000264452.5	chr4	41940618:41940713:41945763:41945831:41946809:41946943,	41945764	41945831	41945817	41945817	Frame_Shift_Del	A	-	p.K129fs
LIHC	TCGA-DD-A3A0-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42626552:42626651:42627630:42627730:42629011:42629126,	42627631	42627730	42627652	42627652	Frame_Shift_Del	A	-	p.F81fs
LIHC	TCGA-DD-A3A0-01	GNPDA2	ENST00000507917.1	chr4	44712969:44713154:44719129:44719312:44724100:44724259,	44719130	44719312	44719171	44719171	Frame_Shift_Del	T	-	p.N123fs
LIHC	TCGA-DD-A3A0-01	GNPDA2	ENST00000507534.1	chr4	44719129:44719312:44720325:44720427:44724100:44724259,44719129:44719312:44720325:44720427:44728490:44728540,	44720326	44720427	44720399	44720399	Frame_Shift_Del	T	-	p.K51fs
LIHC	TCGA-DD-A3A0-01	ATP10D	ENST00000273859.3	chr4	47548640:47548879:47556742:47556931:47559680:47560290,	47556743	47556931	47556782	47556782	Frame_Shift_Del	T	-	p.F559fs
LIHC	TCGA-DD-A3A0-01	CORIN	ENST00000273857.4,ENST00000502252.1,ENST00000508498.1,ENST00000503821.1,ENST00000504584.1,ENST00000505909.1	chr4	47667048:47667280:47676409:47676517:47679954:47680071,	47676410	47676517	47676488	47676488	Frame_Shift_Del	T	-	p.R427fs
LIHC	TCGA-DD-A3A0-01	CORIN	ENST00000273857.4,ENST00000502726.1,ENST00000503821.1,ENST00000504584.1,ENST00000505909.1	chr4	47765395:47765603:47788741:47788942:47808919:47809064,	47788742	47788942	47788863	47788863	Frame_Shift_Del	A	-	p.V96fs
LIHC	TCGA-DD-A3A0-01	TXK	ENST00000264316.4,ENST00000510457.1	chr4	48091766:48091841:48096093:48096221:48097159:48097239,	48096094	48096221	48096183	48096183	Frame_Shift_Del	T	-	p.K207fs
LIHC	TCGA-DD-A3A0-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000507711.1,ENST00000514617.1,ENST00000507873.2	chr4	48553510:48553595:48555231:48555400:48558994:48559135,	48555232	48555400	48555279	48555279	Frame_Shift_Del	G	-	p.P1463fs
LIHC	TCGA-DD-A3A0-01	OCIAD2	ENST00000510159.1	chr4	48899857:48899874:48901845:48901942:48906500:48906628,48899820:48899852:48901845:48901942:48906500:48906628,	48901846	48901942	48901922	48901922	Frame_Shift_Del	T	-	p.K29fs
LIHC	TCGA-DD-A3A0-01	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	49032841:49032977:49034582:49034732:49040052:49040197,	49034583	49034732	49034703	49034703	Frame_Shift_Del	T	-	p.D543fs
LIHC	TCGA-DD-A3A0-01	DCUN1D4	ENST00000507659.1,ENST00000381437.4,ENST00000334635.5,ENST00000507741.1,ENST00000451288.2	chr4	52757972:52758017:52777235:52777340:52779455:52779558,52765502:52765544:52777235:52777340:52779455:52779558,	52777236	52777340	52777312	52777312	Frame_Shift_Del	T	-	p.L231fs
LIHC	TCGA-DD-A3A0-01	SPATA18	ENST00000511028.1,ENST00000419395.2,ENST00000505320.1,ENST00000295213.4	chr4	52942944:52943206:52944900:52945059:52945909:52946066,	52944901	52945059	52944918	52944918	Frame_Shift_Del	A	-	p.A346fs
LIHC	TCGA-DD-A3A0-01	LNX1	ENST00000263925.7,ENST00000306888.2	chr4	54344731:54344909:54347886:54348021:54362189:54362561,	54347887	54348021	54347966	54347966	Frame_Shift_Del	G	-	p.P373fs
LIHC	TCGA-DD-A3A0-01	LNX1	ENST00000263925.7,ENST00000306888.2	chr4	54362189:54362561:54364807:54365010:54373483:54373636,	54364808	54365010	54364900	54364900	Frame_Shift_Del	T	-	p.T200fs
LIHC	TCGA-DD-A3A0-01	LNX1	ENST00000263925.7	chr4	54374152:54374394:54439789:54440255:54457554:54457682,	54439790	54440255	54440133	54440133	Frame_Shift_Del	G	-	p.L13fs
LIHC	TCGA-DD-A3A0-01	KIT	ENST00000288135.5,ENST00000412167.2	chr4	55593581:55593708:55593988:55594093:55594176:55594287,	55593989	55594093	55594015	55594015	Frame_Shift_Del	G	-	p.G601fs
LIHC	TCGA-DD-A3A0-01	TMEM165	ENST00000608091.1	chr4	56283969:56284152:56290704:56290810:56318405:56318625,	56290705	56290810	56290707	56290707	Frame_Shift_Del	C	-	p.D265fs
LIHC	TCGA-DD-A3A0-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56762882:56763066:56765850:56766050:56768509:56768704,	56765851	56766050	56765983	56765983	Frame_Shift_Del	A	-	p.Q757fs
LIHC	TCGA-DD-A3A0-01	KIAA1211	ENST00000503618.1,ENST00000504228.1,ENST00000264229.6	chr4	57138569:57138658:57164379:57164515:57173700:57173731,	57164380	57164515	57164504	57164504	Frame_Shift_Del	A	-	p.K37fs
LIHC	TCGA-DD-A3A0-01	AASDH	ENST00000205214.6,ENST00000514745.1,ENST00000434343.2,ENST00000602986.1,ENST00000513376.1,ENST00000503808.1	chr4	57204770:57204957:57209000:57209132:57209727:57209850,	57209001	57209132	57209034	57209034	Frame_Shift_Del	C	-	p.G958fs
LIHC	TCGA-DD-A3A0-01	AASDH	ENST00000205214.6,ENST00000514745.1,ENST00000434343.2,ENST00000513376.1	chr4	57209727:57209850:57211292:57211456:57215428:57216224,	57211293	57211456	57211373	57211373	Frame_Shift_Del	T	-	p.S859fs
LIHC	TCGA-DD-A3A0-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1,ENST00000513376.1	chr4	57237616:57237809:57244313:57244630:57248642:57248763,	57244314	57244630	57244477	57244477	Frame_Shift_Del	T	-	p.S169fs
LIHC	TCGA-DD-A3A0-01	AASDH	ENST00000602986.1,ENST00000503808.1	chr4	57248642:57248763:57250235:57250507:57253527:57253589,57244313:57244630:57250235:57250507:57253527:57253589,	57250236	57250507	57250288	57250288	Frame_Shift_Del	C	-	p.E60fs
LIHC	TCGA-DD-A3A0-01	IGFBP7	ENST00000295666.4,ENST00000537922.1,ENST00000514062.1,ENST00000512512.1	chr4	57898706:57898718:57899360:57899477:57906989:57907099,	57899361	57899477	57899386	57899386	Frame_Shift_Del	T	-	p.K226fs
LIHC	TCGA-DD-A3A0-01	CENPC	ENST00000513216.1,ENST00000515140.1	chr4	68357897:68357993:68358468:68358715:68359601:68359706,	68358469	68358715	68358639	68358639	Frame_Shift_Del	T	-	p.K789fs
LIHC	TCGA-DD-A3A0-01	CENPC	ENST00000273853.6,ENST00000506882.1	chr4	68357897:68357993:68358586:68358715:68359601:68359706,	68358587	68358715	68358639	68358639	Frame_Shift_Del	T	-	p.K789fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11D	ENST00000283916.6,ENST00000545541.1	chr4	68693185:68693238:68698921:68699099:68703889:68703976,68693185:68693238:68698921:68699099:68700800:68700839,	68698922	68699099	68699020	68699020	Frame_Shift_Del	C	-	p.W198fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11D	ENST00000514868.1	chr4	68699019:68699058:68700800:68700839:68703889:68703976,68698969:68699099:68700800:68700839:68703889:68703976,68691524:68691592:68700800:68700839:68703889:68703976,	68700801	68700839	68700815	68700815	Frame_Shift_Del	T	-	p.N167fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11A	ENST00000513536.1	chr4	68797710:68797778:68810236:68810313:68812167:68812282,	68810237	68810313	68810241	68810241	Frame_Shift_Del	T	-	p.N82fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11A	ENST00000334830.7	chr4	68797710:68797778:68810227:68810355:68812167:68812282,	68810228	68810355	68810241	68810241	Frame_Shift_Del	T	-	p.N82fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11A	ENST00000508048.1,ENST00000396188.2	chr4	68797710:68797778:68810236:68810355:68812167:68812282,	68810237	68810355	68810241	68810241	Frame_Shift_Del	T	-	p.N82fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69094984	69094984	Frame_Shift_Del	A	-	p.Y313fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69095075	69095075	Frame_Shift_Del	A	-	p.F282fs
LIHC	TCGA-DD-A3A0-01	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69095219	69095219	Frame_Shift_Del	T	-	p.K234fs
LIHC	TCGA-DD-A3A0-01	UGT2A3	ENST00000251566.4	chr4	69796872:69796960:69798345:69798477:69811023:69811168,	69798346	69798477	69798467	69798467	Frame_Shift_Del	T	-	p.N292fs
LIHC	TCGA-DD-A3A0-01	UGT2B4	ENST00000305107.6,ENST00000381096.3	chr4	70346047:70346628:70350925:70351145:70352326:70352414,	70350926	70351145	70351123	70351123	Frame_Shift_Del	A	-	p.F371fs
LIHC	TCGA-DD-A3A0-01	SULT1B1	ENST00000512870.1	chr4	70620387:70620516:70620787:70620919:70626176:70626289,	70620788	70620919	70620879	70620879	Frame_Shift_Del	G	-	p.P19fs
LIHC	TCGA-DD-A3A0-01	HTN1	ENST00000511674.1,ENST00000503645.1	chr4	70916154:70916212:70918780:70918844:70920038:70920059,	70918781	70918844	70918800	70918800	Frame_Shift_Del	T	-	p.F4fs
LIHC	TCGA-DD-A3A0-01	ODAM	ENST00000396094.2,ENST00000510847.1,ENST00000514097.1	chr4	71067974:71068046:71068472:71068634:71068872:71068931,	71068473	71068634	71068501	71068501	Frame_Shift_Del	A	-	p.Q226fs
LIHC	TCGA-DD-A3A0-01	RUFY3	ENST00000503025.1,ENST00000381006.3,ENST00000502653.1	chr4	71665121:71665592:71665857:71665922:71668672:71668700,71655211:71655309:71665857:71665922:71668672:71668700,71660511:71660611:71665857:71665922:71668672:71668700,	71665858	71665922	71665883	71665883	Frame_Shift_Del	A	-	p.E528fs
LIHC	TCGA-DD-A3A0-01	GRSF1	ENST00000514161.1,ENST00000254799.6,ENST00000545193.1,ENST00000505068.1,ENST00000499044.2,ENST00000502323.1,ENST00000439371.1,ENST00000506453.1	chr4	71686462:71686578:71690010:71690085:71691012:71691147,	71690011	71690085	71690045	71690045	Frame_Shift_Del	T	-	p.K478fs
LIHC	TCGA-DD-A3A0-01	GRSF1	ENST00000514161.1,ENST00000254799.6,ENST00000545193.1,ENST00000499044.2,ENST00000502323.1,ENST00000439371.1,ENST00000506453.1	chr4	71691012:71691148:71691840:71691962:71693568:71693753,	71691841	71691962	71691855	71691855	Frame_Shift_Del	G	-	p.Q415fs
LIHC	TCGA-DD-A3A0-01	GRSF1	ENST00000514161.1,ENST00000254799.6,ENST00000545193.1,ENST00000499044.2,ENST00000502323.1,ENST00000439371.1,ENST00000506453.1	chr4	71691012:71691148:71691840:71691962:71693568:71693753,	71691841	71691962	71691869	71691869	Frame_Shift_Del	A	-	p.F410fs
LIHC	TCGA-DD-A3A0-01	GRSF1	ENST00000514161.1,ENST00000254799.6,ENST00000545193.1,ENST00000505068.1,ENST00000499044.2,ENST00000502323.1,ENST00000439371.1	chr4	71693583:71693753:71697255:71697391:71698023:71698167,	71697256	71697391	71697272	71697272	Frame_Shift_Del	C	-	p.E313fs
LIHC	TCGA-DD-A3A0-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000340595.3,ENST00000351898.6	chr4	72352664:72352735:72363217:72363409:72397778:72397892,	72363218	72363409	72363374	72363374	Frame_Shift_Del	A	-	p.K668fs
LIHC	TCGA-DD-A3A0-01	GC	ENST00000504199.1	chr4	72635047:72635117:72649677:72649771:72669642:72669758,	72649678	72649771	72649735	72649735	Frame_Shift_Del	T	-	p.M20fs
LIHC	TCGA-DD-A3A0-01	ADAMTS3	ENST00000286657.4	chr4	73161370:73161503:73163993:73164159:73169633:73169797,	73163994	73164159	73164032	73164032	Frame_Shift_Del	A	-	p.L851fs
LIHC	TCGA-DD-A3A0-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73956828	73956828	Frame_Shift_Del	T	-	p.M2173fs
LIHC	TCGA-DD-A3A0-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73956953	73956953	Frame_Shift_Del	G	-	p.P2131fs
LIHC	TCGA-DD-A3A0-01	ANKRD17	ENST00000558247.1,ENST00000561029.1,ENST00000330838.6,ENST00000560372.1,ENST00000509867.2,ENST00000358602.4	chr4	73968191:73968264:73979508:73979625:73981537:73981633,	73979509	73979625	73979546	73979546	Frame_Shift_Del	T	-	p.N1455fs
LIHC	TCGA-DD-A3A0-01	ANKRD17	ENST00000558247.1,ENST00000561029.1,ENST00000330838.6,ENST00000560372.1,ENST00000509867.2,ENST00000358602.4,ENST00000514252.1	chr4	73981537:73981633:73984404:73984567:73985878:73986054,	73984405	73984567	73984544	73984544	Frame_Shift_Del	T	-	p.N1350fs
LIHC	TCGA-DD-A3A0-01	ANKRD17	ENST00000558247.1,ENST00000561029.1	chr4	74000833:74000982:74005247:74006000:74007457:74007509,74000833:74000979:74005247:74006000:74007457:74007509,	74005248	74006000	74005736	74005736	Frame_Shift_Del	A	-	p.L866fs
LIHC	TCGA-DD-A3A0-01	ALB	ENST00000415165.2,ENST00000484992.1,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74280751:74280884:74281972:74282070:74283804:74283820,74280751:74280884:74281972:74282070:74283247:74283331,	74281973	74282070	74282018	74282018	Frame_Shift_Del	A	-	p.K413fs
LIHC	TCGA-DD-A3A0-01	AFM	ENST00000226355.3	chr4	74354411:74354476:74357588:74357803:74361016:74361149,	74357589	74357803	74357755	74357755	Frame_Shift_Del	A	-	p.E337fs
LIHC	TCGA-DD-A3A0-01	BTC	ENST00000512743.1	chr4	75675782:75675929:75681068:75681186:75695267:75695366,75673249:75673359:75681068:75681186:75695267:75695366,	75681069	75681186	75681140	75681140	Frame_Shift_Del	G	-	p.P70fs
LIHC	TCGA-DD-A3A0-01	RCHY1	ENST00000514589.1,ENST00000512706.1,ENST00000505514.1,ENST00000513909.1,ENST00000512567.1,ENST00000380840.2,ENST00000513083.1,ENST00000505105.1,ENST00000451788.1,ENST00000513257.1,ENST00000504085.1,ENST00000324439.5,ENST00000507014.1	chr4	76416933:76416992:76417098:76417143:76419310:76419389,	76417099	76417143	76417133	76417133	Frame_Shift_Del	T	-	p.N139fs
LIHC	TCGA-DD-A3A0-01	THAP6	ENST00000311638.3,ENST00000507556.1,ENST00000504384.1,ENST00000503831.1,ENST00000380837.3	chr4	76440079:76440201:76440642:76440742:76441981:76441999,76439698:76439730:76440642:76440742:76441981:76441999,	76440643	76440742	76440722	76440722	Frame_Shift_Del	A	-	p.L20fs
LIHC	TCGA-DD-A3A0-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76521430:76521524:76522118:76522420:76523260:76523396,	76522119	76522420	76522200	76522200	Frame_Shift_Del	G	-	p.P414fs
LIHC	TCGA-DD-A3A0-01	G3BP2	ENST00000395719.3,ENST00000359707.4	chr4	76573822:76573925:76579166:76579265:76580249:76580430,	76579167	76579265	76579234	76579234	Frame_Shift_Del	T	-	p.N253fs
LIHC	TCGA-DD-A3A0-01	USO1	ENST00000264904.6,ENST00000514213.2	chr4	76711795:76711950:76714842:76715054:76720774:76720885,	76714843	76715054	76714910	76714910	Frame_Shift_Del	A	-	p.S438fs
LIHC	TCGA-DD-A3A0-01	NUP54	ENST00000502850.1	chr4	77052382:77052437:77053675:77053872:77065301:77065445,	77053676	77053872	77053701	77053701	Frame_Shift_Del	T	-	p.K294fs
LIHC	TCGA-DD-A3A0-01	NUP54	ENST00000515460.1,ENST00000264883.3,ENST00000342467.6	chr4	77055328:77055515:77057338:77057565:77065542:77065626,77055328:77055515:77057338:77057565:77065301:77065445,	77057339	77057565	77057419	77057419	Frame_Shift_Del	A	-	p.W148fs
LIHC	TCGA-DD-A3A0-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77305708:77305818:77317421:77317639:77324290:77324429,	77317422	77317639	77317620	77317620	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-DD-A3A0-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660161	77660161	Frame_Shift_Del	G	-	p.G279fs
LIHC	TCGA-DD-A3A0-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77662961	77662961	Frame_Shift_Del	G	-	p.W1212fs
LIHC	TCGA-DD-A3A0-01	SHROOM3	ENST00000296043.6	chr4	77675463:77676345:77677601:77678090:77680697:77680848,	77677602	77678090	77677946	77677946	Frame_Shift_Del	T	-	p.I1685fs
LIHC	TCGA-DD-A3A0-01	SEPT11	ENST00000502584.1,ENST00000505788.1	chr4	77871014:77871083:77917577:77917692:77926753:77926949,	77917578	77917692	77917684	77917684	Frame_Shift_Del	T	-	p.L45fs
LIHC	TCGA-DD-A3A0-01	MRPL1	ENST00000315567.8,ENST00000506674.1,ENST00000502384.1	chr4	78804402:78804654:78806409:78806493:78808373:78808445,	78806410	78806493	78806425	78806425	Frame_Shift_Del	T	-	p.F140fs
LIHC	TCGA-DD-A3A0-01	MRPL1	ENST00000315567.8,ENST00000506674.1,ENST00000502384.1	chr4	78804402:78804654:78806409:78806493:78808373:78808445,	78806410	78806493	78806455	78806455	Frame_Shift_Del	T	-	p.F150fs
LIHC	TCGA-DD-A3A0-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79402957:79403118:79403541:79403689:79410028:79410234,	79403542	79403689	79403609	79403609	Frame_Shift_Del	T	-	p.V2891fs
LIHC	TCGA-DD-A3A0-01	BMP2K	ENST00000502871.1,ENST00000389010.3,ENST00000335016.5	chr4	79766169:79766203:79768341:79768423:79772077:79772210,	79768342	79768423	79768365	79768365	Frame_Shift_Del	C	-	p.A231fs
LIHC	TCGA-DD-A3A0-01	PRDM8	ENST00000515013.1,ENST00000504452.1,ENST00000339711.4,ENST00000415738.2	chr4	81118778:81118917:81121232:81121453:81122443:81122610,	81121233	81121453	81121308	81121308	Frame_Shift_Del	T	-	p.I25fs
LIHC	TCGA-DD-A3A0-01	RASGEF1B	ENST00000264400.2,ENST00000436139.2,ENST00000509081.1	chr4	82377804:82377942:82378652:82378775:82380485:82380668,	82378653	82378775	82378703	82378703	Frame_Shift_Del	A	-	p.C84fs
LIHC	TCGA-DD-A3A0-01	HNRNPDL	ENST00000514511.1	chr4	83348342:83348457:83348585:83348717:83349170:83349332,83348342:83348457:83348585:83348717:83350400:83350578,	83348586	83348717	83348625	83348625	Frame_Shift_Del	T	-	p.K289fs
LIHC	TCGA-DD-A3A0-01	SEC31A	ENST00000443462.2,ENST00000505984.1,ENST00000508502.1,ENST00000264405.5	chr4	83750152:83750211:83763337:83763634:83765538:83765613,	83763338	83763634	83763594	83763594	Frame_Shift_Del	C	-	p.G889fs
LIHC	TCGA-DD-A3A0-01	SEC31A	ENST00000432794.1	chr4	83750152:83750211:83763292:83763634:83765538:83765613,83752089:83752128:83763292:83763634:83765538:83765613,	83763293	83763634	83763594	83763594	Frame_Shift_Del	C	-	p.G889fs
LIHC	TCGA-DD-A3A0-01	SEC31A	ENST00000443462.2,ENST00000513858.1,ENST00000432794.1,ENST00000348405.4,ENST00000311785.7,ENST00000500777.2,ENST00000509142.1,ENST00000326950.5,ENST00000505984.1,ENST00000448323.1,ENST00000508502.1,ENST00000355196.2,ENST00000508479.1,ENST00000395310.2	chr4	83766353:83766446:83769956:83770130:83772583:83772757,83765538:83765662:83769956:83770130:83772583:83772757,	83769957	83770130	83769959	83769959	Frame_Shift_Del	G	-	p.H834fs
LIHC	TCGA-DD-A3A0-01	LIN54	ENST00000510557.1,ENST00000446851.2,ENST00000508171.1,ENST00000506560.1,ENST00000442461.2,ENST00000340417.3,ENST00000505397.1,ENST00000395282.2,ENST00000395283.2,ENST00000510877.1	chr4	83852095:83852298:83857133:83857271:83857431:83857534,	83857134	83857271	83857173	83857173	Frame_Shift_Del	T	-	p.K602fs
LIHC	TCGA-DD-A3A0-01	LIN54	ENST00000510557.1,ENST00000446851.2,ENST00000442461.2	chr4	83891479:83891622:83900035:83900159:83905313:83905997,83891479:83891622:83900035:83900159:83905976:83906029,	83900036	83900159	83900097	83900097	Frame_Shift_Del	T	-	p.K249fs
LIHC	TCGA-DD-A3A0-01	HELQ	ENST00000508591.1,ENST00000295488.3,ENST00000510985.1	chr4	84339245:84339359:84342715:84342889:84347146:84347245,	84342716	84342889	84342723	84342723	Frame_Shift_Del	A	-	p.F981fs
LIHC	TCGA-DD-A3A0-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84374995	84374995	Frame_Shift_Del	G	-	p.P134fs
LIHC	TCGA-DD-A3A0-01	CDS1	ENST00000295887.5	chr4	85540546:85540686:85552971:85553030:85555009:85555092,	85552972	85553030	85552983	85552983	Frame_Shift_Del	T	-	p.F198fs
LIHC	TCGA-DD-A3A0-01	WDFY3	ENST00000295888.4,ENST00000322366.6,ENST00000425179.2	chr4	85599320:85599432:85600071:85600395:85603526:85603623,	85600072	85600395	85600144	85600144	Frame_Shift_Del	G	-	p.H3342fs
LIHC	TCGA-DD-A3A0-01	WDFY3	ENST00000295888.4,ENST00000322366.6	chr4	85661339:85661569:85662913:85663074:85664852:85664952,	85662914	85663074	85663026	85663026	Frame_Shift_Del	A	-	p.L2041fs
LIHC	TCGA-DD-A3A0-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85731039:85731497:85738544:85738738:85741237:85741339,	85738545	85738738	85738582	85738582	Frame_Shift_Del	G	-	p.P618fs
LIHC	TCGA-DD-A3A0-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85742236:85742704:85747967:85748134:85750156:85750343,	85747968	85748134	85748016	85748016	Frame_Shift_Del	C	-	p.A359fs
LIHC	TCGA-DD-A3A0-01	ARHGAP24	ENST00000506421.1,ENST00000503995.1	chr4	86396638:86396712:86491674:86491874:86643037:86643125,	86491675	86491874	86491780	86491780	Frame_Shift_Del	A	-	p.Q29fs
LIHC	TCGA-DD-A3A0-01	MAPK10	ENST00000359221.3,ENST00000395161.2,ENST00000395160.3,ENST00000395169.3,ENST00000361569.2,ENST00000395157.3,ENST00000395166.1	chr4	86988976:86989108:87019676:87019748:87022204:87022367,	87019677	87019748	87019698	87019698	Frame_Shift_Del	T	-	p.I223fs
LIHC	TCGA-DD-A3A0-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6,ENST00000502971.1,ENST00000507902.1	chr4	87593517:87593696:87607862:87607928:87610157:87610214,	87607863	87607928	87607897	87607897	Frame_Shift_Del	G	-	p.W110fs
LIHC	TCGA-DD-A3A0-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87680094:87680226:87683879:87684343:87685745:87685877,	87683880	87684343	87684035	87684035	Frame_Shift_Del	G	-	p.G1238fs
LIHC	TCGA-DD-A3A0-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87687584:87687670:87688969:87689129:87690921:87691136,	87688970	87689129	87689079	87689079	Frame_Shift_Del	A	-	p.E1485fs
LIHC	TCGA-DD-A3A0-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87690921:87691136:87691253:87691352:87692323:87692688,	87691254	87691352	87691333	87691333	Frame_Shift_Del	A	-	p.E1600fs
LIHC	TCGA-DD-A3A0-01	KLHL8	ENST00000425278.2	chr4	88104354:88104541:88116475:88116842:88141569:88141615,	88116476	88116842	88116560	88116560	Frame_Shift_Del	A	-	p.F44fs
LIHC	TCGA-DD-A3A0-01	NUDT9	ENST00000440591.2	chr4	88344033:88344164:88356132:88356372:88362980:88363067,	88356133	88356372	88356264	88356264	Frame_Shift_Del	T	-	p.V30fs
LIHC	TCGA-DD-A3A0-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000506714.1	chr4	89300215:89300272:89304372:89304532:89306650:89306727,	89304373	89304532	89304499	89304499	Frame_Shift_Del	T	-	p.I109fs
LIHC	TCGA-DD-A3A0-01	HERC6	ENST00000504905.1	chr4	89300215:89300272:89304383:89304532:89306650:89306727,	89304384	89304532	89304499	89304499	Frame_Shift_Del	T	-	p.I109fs
LIHC	TCGA-DD-A3A0-01	HERC6	ENST00000502870.1	chr4	89300215:89300272:89304336:89304532:89306650:89306727,	89304337	89304532	89304499	89304499	Frame_Shift_Del	T	-	p.I109fs
LIHC	TCGA-DD-A3A0-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89319293:89319361:89326027:89326149:89326705:89326765,	89326028	89326149	89326115	89326115	Frame_Shift_Del	A	-	p.K394fs
LIHC	TCGA-DD-A3A0-01	HERC6	ENST00000264346.7	chr4	89338576:89338731:89345011:89345125:89349731:89349902,89338576:89338731:89345011:89345125:89345746:89345854,	89345012	89345125	89345040	89345040	Frame_Shift_Del	A	-	p.E581fs
LIHC	TCGA-DD-A3A0-01	HERC6	ENST00000264346.7	chr4	89345746:89345854:89349731:89349902:89352313:89352457,	89349732	89349902	89349778	89349778	Frame_Shift_Del	A	-	p.Q625fs
LIHC	TCGA-DD-A3A0-01	HERC6	ENST00000264346.7,ENST00000380265.5	chr4	89361025:89361209:89361299:89361402:89363385:89364249,	89361300	89361402	89361351	89361351	Frame_Shift_Del	T	-	p.F895fs
LIHC	TCGA-DD-A3A0-01	HERC5	ENST00000264350.3	chr4	89381245:89381322:89383285:89383507:89384682:89384774,	89383286	89383507	89383467	89383467	Frame_Shift_Del	A	-	p.G216fs
LIHC	TCGA-DD-A3A0-01	HERC3	ENST00000426683.1,ENST00000407637.1,ENST00000402738.1,ENST00000452979.1	chr4	89516707:89516765:89526945:89527200:89570990:89570998,	89526946	89527200	89527135	89527135	Frame_Shift_Del	A	-	p.E54fs
LIHC	TCGA-DD-A3A0-01	HERC3	ENST00000426683.1,ENST00000407637.1,ENST00000402738.1,ENST00000452979.1	chr4	89516707:89516765:89526945:89527200:89570990:89570998,	89526946	89527200	89527157	89527157	Frame_Shift_Del	C	-	p.N61fs
LIHC	TCGA-DD-A3A0-01	HERC3	ENST00000264345.3,ENST00000402738.1	chr4	89588606:89588639:89589042:89589232:89591010:89591174,	89589043	89589232	89589216	89589216	Frame_Shift_Del	C	-	p.N539fs
LIHC	TCGA-DD-A3A0-01	SMARCAD1	ENST00000457823.2,ENST00000394961.2,ENST00000509418.1,ENST00000359052.4,ENST00000354268.4	chr4	95201742:95201931:95202622:95202741:95204271:95204454,	95202623	95202741	95202646	95202646	Frame_Shift_Del	C	-	p.S877fs
LIHC	TCGA-DD-A3A0-01	PDLIM5	ENST00000317968.4,ENST00000542407.1	chr4	95494501:95494544:95496766:95497185:95506715:95506888,	95496767	95497185	95496776	95496776	Frame_Shift_Del	A	-	p.K101fs
LIHC	TCGA-DD-A3A0-01	STPG2	ENST00000295268.3	chr4	99049578:99049743:99055497:99055610:99064192:99064391,	99055498	99055610	99055564	99055564	Frame_Shift_Del	A	-	p.F52fs
LIHC	TCGA-DD-A3A0-01	EIF4E	ENST00000450253.2,ENST00000505194.1,ENST00000280892.6,ENST00000504432.1	chr4	99806072:99806212:99808229:99808343:99809039:99809103,	99808230	99808343	99808241	99808241	Frame_Shift_Del	A	-	p.W130fs
LIHC	TCGA-DD-A3A0-01	ADH5	ENST00000512621.1,ENST00000508511.1,ENST00000512991.1,ENST00000296412.8	chr4	99998003:99998074:100002515:100002603:100003125:100003267,	100002516	100002603	100002553	100002553	Frame_Shift_Del	A	-	p.C103fs
LIHC	TCGA-DD-A3A0-01	ADH5	ENST00000502590.1	chr4	99998003:99998074:100002515:100002571:100003125:100003267,	100002516	100002571	100002553	100002553	Frame_Shift_Del	A	-	p.C103fs
LIHC	TCGA-DD-A3A0-01	ADH5	ENST00000503130.1	chr4	100002515:100002603:100003152:100003267:100006265:100006367,	100003153	100003267	100003159	100003159	Frame_Shift_Del	T	-	p.S75fs
LIHC	TCGA-DD-A3A0-01	ADH5	ENST00000512621.1,ENST00000508511.1,ENST00000512991.1,ENST00000508146.1,ENST00000505652.1,ENST00000296412.8	chr4	100002515:100002603:100003125:100003267:100006265:100006367,	100003126	100003267	100003159	100003159	Frame_Shift_Del	T	-	p.S75fs
LIHC	TCGA-DD-A3A0-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000506705.1,ENST00000505590.1,ENST00000512499.1,ENST00000504894.1,ENST00000504125.1,ENST00000503416.1	chr4	100060293:100060299:100062691:100062833:100063829:100063931,	100062692	100062833	100062766	100062766	Frame_Shift_Del	A	-	p.F82fs
LIHC	TCGA-DD-A3A0-01	ADH1A	ENST00000209668.2	chr4	100197523:100197805:100200582:100200721:100201300:100201436,	100200583	100200721	100200620	100200620	Frame_Shift_Del	T	-	p.I356fs
LIHC	TCGA-DD-A3A0-01	H2AFZ	ENST00000296417.5,ENST00000511319.1,ENST00000529158.1	chr4	100869328:100869680:100869967:100870097:100870429:100870536,	100869968	100870097	100870068	100870068	Frame_Shift_Del	T	-	p.K75fs
LIHC	TCGA-DD-A3A0-01	EMCN	ENST00000305864.3,ENST00000506323.1,ENST00000502569.1,ENST00000502327.1,ENST00000511970.1	chr4	101396194:101396266:101401073:101401196:101439007:101439155,	101401074	101401196	101401079	101401079	Frame_Shift_Del	G	-	p.P61fs
LIHC	TCGA-DD-A3A0-01	PPP3CA	ENST00000523694.2,ENST00000507176.1,ENST00000394854.3,ENST00000394853.4	chr4	101982243:101982318:101984388:101984514:102001688:102001783,	101984389	101984514	101984395	101984395	Frame_Shift_Del	C	-	p.E359fs
LIHC	TCGA-DD-A3A0-01	SLC39A8	ENST00000394833.2,ENST00000356736.4,ENST00000424970.2,ENST00000510255.1,ENST00000512657.1	chr4	103226145:103226268:103228592:103228762:103236824:103236896,	103228593	103228762	103228622	103228622	Frame_Shift_Del	A	-	p.S175fs
LIHC	TCGA-DD-A3A0-01	NFKB1	ENST00000505458.1,ENST00000510638.1,ENST00000394820.4,ENST00000226574.4	chr4	103498032:103498196:103500037:103500196:103501691:103501745,	103500038	103500196	103500062	103500062	Frame_Shift_Del	A	-	p.Q199fs
LIHC	TCGA-DD-A3A0-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104044027:104044246:104053849:104054053:104054851:104055049,	104053850	104054053	104053923	104053923	Frame_Shift_Del	T	-	p.K2284fs
LIHC	TCGA-DD-A3A0-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157657	106157657	Frame_Shift_Del	T	-	p.L874fs
LIHC	TCGA-DD-A3A0-01	TBCK	ENST00000467183.2,ENST00000394708.2,ENST00000432496.2,ENST00000514689.1,ENST00000510927.1,ENST00000394706.3,ENST00000515705.1,ENST00000361687.4,ENST00000273980.5	chr4	107037475:107037535:107092251:107092427:107114765:107114927,	107092252	107092427	107092289	107092289	Frame_Shift_Del	A	-	p.F733fs
LIHC	TCGA-DD-A3A0-01	TBCK	ENST00000514689.1	chr4	107092397:107092427:107114765:107114927:107133906:107133992,	107114766	107114927	107114813	107114813	Frame_Shift_Del	A	-	p.L671fs
LIHC	TCGA-DD-A3A0-01	AIMP1	ENST00000394701.4	chr4	107237663:107237751:107246141:107246275:107248607:107248721,	107246142	107246275	107246169	107246169	Frame_Shift_Del	G	-	p.M25fs
LIHC	TCGA-DD-A3A0-01	SEC24B	ENST00000265175.5,ENST00000504968.2,ENST00000399100.2	chr4	110442272:110442328:110442575:110442782:110445973:110446097,	110442576	110442782	110442643	110442643	Frame_Shift_Del	T	-	p.L790fs
LIHC	TCGA-DD-A3A0-01	EGF	ENST00000509793.1	chr4	110866228:110866431:110882022:110882145:110883018:110883141,	110882023	110882145	110882039	110882039	Frame_Shift_Del	T	-	p.A361fs
LIHC	TCGA-DD-A3A0-01	ELOVL6	ENST00000302274.3,ENST00000503885.1,ENST00000506625.1,ENST00000394607.3	chr4	110980805:110980910:111026652:111026784:111119402:111119522,	111026653	111026784	111026703	111026703	Frame_Shift_Del	A	-	p.F57fs
LIHC	TCGA-DD-A3A0-01	ENPEP	ENST00000265162.5	chr4	111412188:111412320:111427792:111427913:111430808:111430963,	111427793	111427913	111427853	111427853	Frame_Shift_Del	A	-	p.K327fs
LIHC	TCGA-DD-A3A0-01	ENPEP	ENST00000265162.5	chr4	111441370:111441522:111452353:111452433:111463906:111464043,	111452354	111452433	111452425	111452425	Frame_Shift_Del	A	-	p.E600fs
LIHC	TCGA-DD-A3A0-01	ANK2	ENST00000394537.3,ENST00000503271.1,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000503423.1,ENST00000264366.6	chr4	114209543:114209642:114213571:114213670:114214595:114214694,	114213572	114213670	114213644	114213644	Frame_Shift_Del	G	-	p.G784fs
LIHC	TCGA-DD-A3A0-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274570	114274570	Frame_Shift_Del	A	-	p.E1599fs
LIHC	TCGA-DD-A3A0-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824699	114824699	Frame_Shift_Del	C	-	p.W177fs
LIHC	TCGA-DD-A3A0-01	SEC24D	ENST00000419654.2,ENST00000379735.5,ENST00000514561.1,ENST00000280551.6,ENST00000503683.1	chr4	119736781:119736881:119738418:119738567:119745774:119745904,	119738419	119738567	119738510	119738510	Frame_Shift_Del	G	-	p.P102fs
LIHC	TCGA-DD-A3A0-01	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120194786:120194863:120212319:120212416:120213492:120215793,	120212320	120212416	120212338	120212338	Frame_Shift_Del	G	-	p.R757fs
LIHC	TCGA-DD-A3A0-01	HSPA4L	ENST00000508776.1,ENST00000505726.1,ENST00000296464.4,ENST00000439123.2	chr4	128744671:128744779:128748459:128748579:128751792:128751954,	128748460	128748579	128748531	128748531	Frame_Shift_Del	A	-	p.G706fs
LIHC	TCGA-DD-A3A0-01	PLK4	ENST00000270861.5,ENST00000514379.1,ENST00000515069.1,ENST00000507249.1	chr4	128802985:128803081:128804416:128804512:128804593:128804671,	128804417	128804512	128804463	128804463	Frame_Shift_Del	A	-	p.Q58fs
LIHC	TCGA-DD-A3A0-01	PLK4	ENST00000511942.1	chr4	128802985:128803081:128804420:128804512:128804593:128804671,	128804421	128804512	128804463	128804463	Frame_Shift_Del	A	-	p.Q58fs
LIHC	TCGA-DD-A3A0-01	LARP1B	ENST00000326639.6,ENST00000441387.1,ENST00000432347.2,ENST00000354456.3,ENST00000394288.3,ENST00000427266.1,ENST00000512292.1,ENST00000507377.1	chr4	128998995:128999117:129003319:129003460:129012155:129012299,	129003320	129003460	129003340	129003340	Frame_Shift_Del	C	-	p.P80fs
LIHC	TCGA-DD-A3A0-01	MAML3	ENST00000502696.1,ENST00000509479.2	chr4	140641365:140641477:140646904:140646989:140651569:140651821,	140646905	140646989	140646909	140646909	Frame_Shift_Del	A	-	p.F804fs
LIHC	TCGA-DD-A3A0-01	SCOC	ENST00000394201.4,ENST00000394205.3,ENST00000512749.1,ENST00000608372.1,ENST00000506322.1,ENST00000502535.1,ENST00000338517.4,ENST00000394203.3,ENST00000510586.1	chr4	141300274:141300346:141300722:141300806:141302115:141302280,	141300723	141300806	141300756	141300756	Frame_Shift_Del	A	-	p.E59fs
LIHC	TCGA-DD-A3A0-01	SMAD1	ENST00000515385.1,ENST00000394092.2,ENST00000302085.4	chr4	146463733:146463850:146467854:146468076:146474935:146475069,	146467855	146468076	146467883	146467883	Frame_Shift_Del	A	-	p.P268fs
LIHC	TCGA-DD-A3A0-01	C4orf51	ENST00000511965.1,ENST00000438731.1	chr4	146617710:146617784:146648062:146648121:146650320:146650381,	146648063	146648121	146648089	146648089	Frame_Shift_Del	T	-	p.F112fs
LIHC	TCGA-DD-A3A0-01	SLC10A7	ENST00000264986.3,ENST00000335472.7,ENST00000432059.2,ENST00000507030.1,ENST00000394062.3	chr4	147215081:147215247:147227077:147227161:147247112:147247148,	147227078	147227161	147227111	147227111	Frame_Shift_Del	A	-	p.F161fs
LIHC	TCGA-DD-A3A0-01	ARHGAP10	ENST00000507661.1,ENST00000506054.1,ENST00000336498.3,ENST00000414545.2	chr4	148834224:148834290:148860975:148861050:148867767:148867855,	148860976	148861050	148860980	148860980	Frame_Shift_Del	A	-	p.I411fs
LIHC	TCGA-DD-A3A0-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151792496:151792605:151793814:151793907:151814203:151814301,	151793815	151793907	151793833	151793833	Frame_Shift_Del	A	-	p.L747fs
LIHC	TCGA-DD-A3A0-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151793814:151793907:151814203:151814301:151817545:151817608,	151814204	151814301	151814224	151814224	Frame_Shift_Del	A	-	p.F715fs
LIHC	TCGA-DD-A3A0-01	SH3D19	ENST00000409598.4,ENST00000455740.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152070651:152070713:152080391:152080504:152095821:152096444,152070651:152070713:152080391:152080504:152086740:152086848,	152080392	152080504	152080450	152080450	Frame_Shift_Del	C	-	p.G286fs
LIHC	TCGA-DD-A3A0-01	FGB	ENST00000509493.1,ENST00000302068.4	chr4	155490342:155490459:155490665:155490951:155491570:155491951,	155490666	155490951	155490900	155490900	Frame_Shift_Del	C	-	p.T398fs
LIHC	TCGA-DD-A3A0-01	TDO2	ENST00000536354.2,ENST00000506072.1,ENST00000507590.1	chr4	156825169:156825275:156826218:156826309:156828873:156828944,	156826219	156826309	156826221	156826221	Frame_Shift_Del	G	-	p.L48fs
LIHC	TCGA-DD-A3A0-01	GLRB	ENST00000509282.1,ENST00000264428.4	chr4	158064958:158065111:158073869:158074162:158091583:158091958,	158073870	158074162	158074000	158074000	Frame_Shift_Del	G	-	p.V345fs
LIHC	TCGA-DD-A3A0-01	TMA16	ENST00000508268.1,ENST00000513134.1,ENST00000358572.5,ENST00000513272.1	chr4	164415859:164415956:164428184:164428297:164433973:164434011,	164428185	164428297	164428202	164428202	Frame_Shift_Del	A	-	p.G7fs
LIHC	TCGA-DD-A3A0-01	KLHL2	ENST00000509704.1,ENST00000226725.6,ENST00000514860.1	chr4	166141152:166141211:166149958:166150065:166184348:166184433,166141152:166141211:166149958:166150065:166159929:166159983,	166149959	166150065	166150046	166150046	Frame_Shift_Del	T	-	p.Y80fs
LIHC	TCGA-DD-A3A0-01	KLHL2	ENST00000506824.1,ENST00000226725.6,ENST00000514860.1,ENST00000538127.1	chr4	166149958:166150065:166184348:166184511:166215510:166215620,166159929:166160051:166184348:166184511:166215510:166215620,	166184349	166184511	166184409	166184409	Frame_Shift_Del	T	-	p.F148fs
LIHC	TCGA-DD-A3A0-01	SPOCK3	ENST00000507370.1,ENST00000541354.1,ENST00000421836.2,ENST00000511269.1,ENST00000504953.1,ENST00000511905.1,ENST00000534949.1,ENST00000505187.1,ENST00000502821.1,ENST00000511531.1,ENST00000512681.1,ENST00000357154.3,ENST00000502330.1,ENST00000357545.4,ENST00000506886.1,ENST00000507137.1,ENST00000541637.1	chr4	167663147:167663210:167675658:167675880:167713320:167713440,	167675659	167675880	167675753	167675753	Frame_Shift_Del	T	-	p.E282fs
LIHC	TCGA-DD-A3A0-01	DDX60L	ENST00000511577.1,ENST00000260184.7	chr4	169294816:169294959:169296527:169296675:169299504:169299626,	169296528	169296675	169296601	169296601	Frame_Shift_Del	A	-	p.F1520fs
LIHC	TCGA-DD-A3A0-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170051196:170051307:170057468:170057771:170076630:170076726,	170057469	170057771	170057551	170057551	Frame_Shift_Del	G	-	p.P329fs
LIHC	TCGA-DD-A3A0-01	CLCN3	ENST00000515420.1	chr4	170616781:170616843:170618339:170618430:170618511:170618885,	170618340	170618430	170618427	170618427	Frame_Shift_Del	T	-	p.F369fs
LIHC	TCGA-DD-A3A0-01	HPGD	ENST00000504433.1,ENST00000296521.7,ENST00000296522.6,ENST00000542498.1,ENST00000514584.1,ENST00000510901.1,ENST00000512410.1,ENST00000506910.1	chr4	175429846:175429943:175439121:175439228:175443094:175443214,	175439122	175439228	175439150	175439150	Frame_Shift_Del	T	-	p.N99fs
LIHC	TCGA-DD-A3A0-01	WWC2	ENST00000378925.3,ENST00000448232.2,ENST00000513834.1	chr4	184020644:184020775:184114751:184114861:184129105:184129309,	184114752	184114861	184114771	184114771	Frame_Shift_Del	T	-	p.F51fs
LIHC	TCGA-DD-A3A0-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184931770	184931770	Frame_Shift_Del	A	-	p.T593fs
LIHC	TCGA-DD-A3A0-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184932187	184932187	Frame_Shift_Del	T	-	p.A732fs
LIHC	TCGA-DD-A3A0-01	SNX25	ENST00000264694.8,ENST00000504273.1,ENST00000504959.1	chr4	186263129:186263270:186267690:186267804:186274638:186274756,186263129:186263270:186267690:186267804:186272598:186272763,	186267691	186267804	186267745	186267745	Frame_Shift_Del	A	-	p.K584fs
LIHC	TCGA-DD-A3A0-01	C4orf47	ENST00000508698.1,ENST00000512770.1	chr4	186350543:186350665:186357199:186357337:186361693:186361810,	186357200	186357337	186357263	186357263	Frame_Shift_Del	A	-	p.S128fs
LIHC	TCGA-DD-A3A0-01	SORBS2	ENST00000445625.1	chr4	186556508:186556565:186560030:186560189:186567821:186567936,186551702:186551737:186560030:186560189:186567821:186567936,	186560031	186560189	186560185	186560185	Frame_Shift_Del	G	-	p.P409fs
LIHC	TCGA-DD-A3A0-01	KLKB1	ENST00000511608.1,ENST00000264690.6,ENST00000511406.1	chr4	187177145:187177241:187178379:187178519:187179174:187179446,	187178380	187178519	187178499	187178499	Frame_Shift_Del	G	-	p.G570fs
LIHC	TCGA-DD-A3A0-01	F11	ENST00000452239.1,ENST00000403665.2,ENST00000264692.4	chr4	187197008:187197050:187197384:187197544:187201165:187201275,	187197385	187197544	187197501	187197501	Frame_Shift_Del	T	-	p.F187fs
LIHC	TCGA-DD-A3A0-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542551	187542551	Frame_Shift_Del	A	-	p.L1730fs
LIHC	TCGA-DD-A3A0-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163106	163106	Frame_Shift_Del	C	-	p.S617fs
LIHC	TCGA-DD-A3A0-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163205	163205	Frame_Shift_Del	G	-	p.A650fs
LIHC	TCGA-DD-A3A0-01	EXOC3	ENST00000315013.5,ENST00000503889.2,ENST00000512944.1	chr5	458014:458140:459473:459574:462074:462185,	459474	459574	459518	459518	Frame_Shift_Del	T	-	p.D445fs
LIHC	TCGA-DD-A3A0-01	EXOC3	ENST00000315013.5,ENST00000503889.2,ENST00000512944.1	chr5	458014:458140:459473:459574:462074:462185,	459474	459574	459522	459522	Frame_Shift_Del	A	-	p.K447fs
LIHC	TCGA-DD-A3A0-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	473475:473497:474997:475247:475675:475786,	474998	475247	475024	475024	Frame_Shift_Del	G	-	p.P825fs
LIHC	TCGA-DD-A3A0-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6607312:6607497:6609938:6610035:6611067:6611198,	6609939	6610035	6609972	6609972	Frame_Shift_Del	T	-	p.K430fs
LIHC	TCGA-DD-A3A0-01	ADCY2	ENST00000537121.1,ENST00000338316.4	chr5	7743780:7743865:7757561:7757699:7766799:7766919,	7757562	7757699	7757571	7757571	Frame_Shift_Del	A	-	p.K657fs
LIHC	TCGA-DD-A3A0-01	ADCY2	ENST00000537121.1,ENST00000338316.4	chr5	7743780:7743865:7757561:7757699:7766799:7766919,	7757562	7757699	7757583	7757583	Frame_Shift_Del	C	-	p.P660fs
LIHC	TCGA-DD-A3A0-01	CTNND2	ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	10981884:10981958:10988222:10988354:10992662:10992789,	10988223	10988354	10988230	10988230	Frame_Shift_Del	G	-	p.A1112fs
LIHC	TCGA-DD-A3A0-01	CTNND2	ENST00000458100.2,ENST00000359640.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	10981884:10981958:10988222:10988354:10992662:10992789,	10988223	10988354	10988304	10988304	Frame_Shift_Del	T	-	p.T1088fs
LIHC	TCGA-DD-A3A0-01	CTNND2	ENST00000458100.2,ENST00000504499.1,ENST00000511377.1,ENST00000495388.2,ENST00000304623.8,ENST00000503622.1	chr5	11083992:11084067:11098686:11098860:11110969:11111155,11082807:11082958:11098686:11098860:11110969:11111155,	11098687	11098860	11098777	11098777	Frame_Shift_Del	G	-	p.P849fs
LIHC	TCGA-DD-A3A0-01	CTNND2	ENST00000359640.2,ENST00000511377.1,ENST00000304623.8	chr5	11364968:11365002:11384776:11385341:11397142:11397315,	11384777	11385341	11384949	11384949	Frame_Shift_Del	G	-	p.P335fs
LIHC	TCGA-DD-A3A0-01	DNAH5	ENST00000265104.4	chr5	13735239:13735430:13735926:13736041:13737360:13737604,	13735927	13736041	13736029	13736029	Frame_Shift_Del	C	-	p.G3823fs
LIHC	TCGA-DD-A3A0-01	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830813	13830813	Frame_Shift_Del	C	-	p.G1985fs
LIHC	TCGA-DD-A3A0-01	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830834	13830834	Frame_Shift_Del	G	-	p.P1978fs
LIHC	TCGA-DD-A3A0-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000509967.2,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14297180:14297372:14304569:14304701:14316621:14316852,	14304570	14304701	14304621	14304621	Frame_Shift_Del	C	-	p.P474fs
LIHC	TCGA-DD-A3A0-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000509967.2,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14297180:14297372:14304569:14304701:14316621:14316852,	14304570	14304701	14304638	14304638	Frame_Shift_Del	C	-	p.D479fs
LIHC	TCGA-DD-A3A0-01	TRIO	ENST00000537187.1,ENST00000510281.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14482726:14482882:14485177:14485355:14487572:14487839,	14485178	14485355	14485326	14485326	Frame_Shift_Del	T	-	p.I2269fs
LIHC	TCGA-DD-A3A0-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
LIHC	TCGA-DD-A3A0-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
LIHC	TCGA-DD-A3A0-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16674961:16675259:16676139:16676263:16680055:16680213,	16676140	16676263	16676167	16676167	Frame_Shift_Del	G	-	p.L1547fs
LIHC	TCGA-DD-A3A0-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16674961:16675259:16676139:16676263:16680055:16680213,	16676140	16676263	16676227	16676227	Frame_Shift_Del	A	-	p.Y1527fs
LIHC	TCGA-DD-A3A0-01	CDH10	ENST00000264463.4	chr5	24498506:24498628:24505220:24505357:24509674:24509928,	24505221	24505357	24505318	24505318	Frame_Shift_Del	A	-	p.F432fs
LIHC	TCGA-DD-A3A0-01	CDH6	ENST00000514738.1,ENST00000508132.1,ENST00000265071.2	chr5	31294305:31294363:31297395:31297515:31299570:31299738,	31297396	31297515	31297401	31297401	Frame_Shift_Del	T	-	p.F177fs
LIHC	TCGA-DD-A3A0-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087504	32087504	Frame_Shift_Del	C	-	p.T1317fs
LIHC	TCGA-DD-A3A0-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087802	32087802	Frame_Shift_Del	A	-	p.P1416fs
LIHC	TCGA-DD-A3A0-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089389	32089389	Frame_Shift_Del	A	-	p.R1945fs
LIHC	TCGA-DD-A3A0-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32090450	32090450	Frame_Shift_Del	T	-	p.I2299fs
LIHC	TCGA-DD-A3A0-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32091118	32091118	Frame_Shift_Del	C	-	p.P2522fs
LIHC	TCGA-DD-A3A0-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32091140	32091140	Frame_Shift_Del	T	-	p.V2529fs
LIHC	TCGA-DD-A3A0-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32093012:32093130:32097384:32097486:32098469:32098740,	32097385	32097486	32097442	32097442	Frame_Shift_Del	T	-	p.F2635fs
LIHC	TCGA-DD-A3A0-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32097384:32097486:32098469:32098740:32101210:32101345,	32098470	32098740	32098524	32098524	Frame_Shift_Del	G	-	p.G2668fs
LIHC	TCGA-DD-A3A0-01	ADAMTS12	ENST00000504830.1,ENST00000504582.1	chr5	33624335:33624456:33630884:33631018:33637681:33637851,	33630885	33631018	33630974	33630974	Frame_Shift_Del	A	-	p.S645fs
LIHC	TCGA-DD-A3A0-01	ADAMTS12	ENST00000515401.1,ENST00000352040.3	chr5	33751508:33751653:33881223:33881585:33891834:33892046,	33881224	33881585	33881401	33881401	Frame_Shift_Del	A	-	p.F104fs
LIHC	TCGA-DD-A3A0-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963809	33963809	Frame_Shift_Del	T	-	p.N292fs
LIHC	TCGA-DD-A3A0-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963815	33963815	Frame_Shift_Del	T	-	p.N290fs
LIHC	TCGA-DD-A3A0-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963920	33963920	Frame_Shift_Del	G	-	p.P255fs
LIHC	TCGA-DD-A3A0-01	TTC23L	ENST00000505624.1,ENST00000514080.1	chr5	34866996:34867174:34869009:34869118:34880285:34880413,	34869010	34869118	34869116	34869116	Frame_Shift_Del	G	-	p.R316fs
LIHC	TCGA-DD-A3A0-01	DNAJC21	ENST00000514237.1,ENST00000342382.4,ENST00000303525.7,ENST00000382021.2	chr5	34938962:34939114:34941200:34941288:34944971:34945130,	34941201	34941288	34941246	34941246	Frame_Shift_Del	T	-	p.L314fs
LIHC	TCGA-DD-A3A0-01	AGXT2	ENST00000231420.6,ENST00000512135.1	chr5	35003867:35003966:35010104:35010254:35025867:35025938,35003867:35003966:35010104:35010254:35013058:35013150,	35010105	35010254	35010226	35010226	Frame_Shift_Del	T	-	p.N406fs
LIHC	TCGA-DD-A3A0-01	AGXT2	ENST00000505349.1,ENST00000231420.6,ENST00000512135.1	chr5	35013058:35013150:35014091:35014224:35025867:35025938,	35014092	35014224	35014184	35014184	Frame_Shift_Del	C	-	p.G335fs
LIHC	TCGA-DD-A3A0-01	SPEF2	ENST00000509059.1,ENST00000282469.6,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35659151:35659309:35667173:35667361:35670160:35670329,	35667174	35667361	35667274	35667274	Frame_Shift_Del	A	-	p.E423fs
LIHC	TCGA-DD-A3A0-01	SPEF2	ENST00000303129.4,ENST00000506526.1,ENST00000513078.1,ENST00000440995.2,ENST00000356031.3	chr5	35795804:35795897:35800069:35800249:35806808:35807054,	35800070	35800249	35800109	35800109	Frame_Shift_Del	C	-	p.P1619fs
LIHC	TCGA-DD-A3A0-01	SKP2	ENST00000546211.1,ENST00000513151.1,ENST00000509692.1	chr5	36168414:36168549:36170445:36170544:36171704:36171835,36166620:36166764:36170445:36170544:36171704:36171835,	36170446	36170544	36170455	36170455	Frame_Shift_Del	A	-	p.A227fs
LIHC	TCGA-DD-A3A0-01	NADK2	ENST00000509225.1,ENST00000381937.4,ENST00000404560.3,ENST00000282512.3,ENST00000397338.1,ENST00000511613.1	chr5	36201207:36201263:36207271:36207367:36211945:36212024,	36207272	36207367	36207322	36207322	Frame_Shift_Del	T	-	p.K139fs
LIHC	TCGA-DD-A3A0-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36676993:36677286:36679728:36679962:36680496:36680691,	36679729	36679962	36679908	36679908	Frame_Shift_Del	T	-	p.V347fs
LIHC	TCGA-DD-A3A0-01	SLC1A3	ENST00000381918.3	chr5	36679728:36679962:36680496:36680691:36683965:36684100,36679728:36679962:36680496:36680691:36686166:36686335,	36680497	36680691	36680620	36680620	Frame_Shift_Del	G	-	p.E406fs
LIHC	TCGA-DD-A3A0-01	SLC1A3	ENST00000265113.4,ENST00000506178.1	chr5	36680496:36680691:36683965:36684100:36686166:36686335,	36683966	36684100	36683991	36683991	Frame_Shift_Del	G	-	p.G439fs
LIHC	TCGA-DD-A3A0-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985396	36985396	Frame_Shift_Del	A	-	p.Q705fs
LIHC	TCGA-DD-A3A0-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	36984777:36986403:36995723:36995906:37000474:37000608,	36995724	36995906	36995851	36995851	Frame_Shift_Del	A	-	p.P1083fs
LIHC	TCGA-DD-A3A0-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37059004:37059267:37060945:37061120:37063891:37064080,	37060946	37061120	37061021	37061021	Frame_Shift_Del	T	-	p.H2587fs
LIHC	TCGA-DD-A3A0-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1	chr5	37305158:37305312:37307398:37307534:37309230:37309369,	37307399	37307534	37307482	37307482	Frame_Shift_Del	T	-	p.K940fs
LIHC	TCGA-DD-A3A0-01	NUP155	ENST00000231498.3,ENST00000513532.1,ENST00000381843.2	chr5	37341191:37341344:37342650:37342748:37348606:37348698,	37342651	37342748	37342695	37342695	Frame_Shift_Del	T	-	p.N350fs
LIHC	TCGA-DD-A3A0-01	LIFR	ENST00000503088.1,ENST00000263409.4,ENST00000453190.2	chr5	38499614:38499685:38502738:38502901:38504077:38504223,	38502739	38502901	38502761	38502761	Frame_Shift_Del	T	-	p.K526fs
LIHC	TCGA-DD-A3A0-01	RICTOR	ENST00000357387.3,ENST00000296782.5	chr5	38945592:38945826:38946569:38946654:38947365:38947543,	38946570	38946654	38946623	38946623	Frame_Shift_Del	T	-	p.N1449fs
LIHC	TCGA-DD-A3A0-01	C9	ENST00000263408.4	chr5	39311238:39311479:39315876:39316131:39331777:39331916,	39315877	39316131	39316001	39316001	Frame_Shift_Del	T	-	p.N249fs
LIHC	TCGA-DD-A3A0-01	DAB2	ENST00000320816.6	chr5	39381555:39381718:39382719:39383373:39388406:39388469,	39382720	39383373	39382925	39382925	Frame_Shift_Del	T	-	p.N379fs
LIHC	TCGA-DD-A3A0-01	PRKAA1	ENST00000296800.4,ENST00000397128.2,ENST00000506652.1,ENST00000509874.1	chr5	40771820:40771965:40775511:40775605:40777546:40777688,	40775512	40775605	40775573	40775573	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A3A0-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
LIHC	TCGA-DD-A3A0-01	OXCT1	ENST00000508557.1,ENST00000509987.1,ENST00000512084.1,ENST00000196371.5,ENST00000510634.1	chr5	41731840:41731872:41739491:41739593:41749628:41749709,	41739492	41739593	41739495	41739495	Frame_Shift_Del	A	-	p.F506fs
LIHC	TCGA-DD-A3A0-01	C5orf51	ENST00000509976.1,ENST00000381647.2	chr5	41907837:41907944:41909847:41909994:41911149:41911281,	41909848	41909994	41909898	41909898	Frame_Shift_Del	T	-	p.D86fs
LIHC	TCGA-DD-A3A0-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927229	41927229	Frame_Shift_Del	T	-	p.F102fs
LIHC	TCGA-DD-A3A0-01	HMGCS1	ENST00000325110.6,ENST00000433297.2	chr5	43294792:43294963:43295853:43296019:43297103:43297268,	43295854	43296019	43295884	43295884	Frame_Shift_Del	T	-	p.N292fs
LIHC	TCGA-DD-A3A0-01	PAIP1	ENST00000436644.2,ENST00000508537.1,ENST00000338972.4,ENST00000306846.3,ENST00000511321.1,ENST00000514514.1	chr5	43536955:43537046:43543105:43543218:43547829:43548015,43539030:43539137:43543105:43543218:43547829:43547939,	43543106	43543218	43543202	43543202	Frame_Shift_Del	T	-	p.N213fs
LIHC	TCGA-DD-A3A0-01	NNT	ENST00000512422.1,ENST00000344920.4,ENST00000505678.2,ENST00000264663.5	chr5	43609244:43609448:43613009:43613239:43615949:43616136,	43613010	43613239	43613182	43613182	Frame_Shift_Del	G	-	p.V108fs
LIHC	TCGA-DD-A3A0-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43651885:43651986:43653119:43653315:43655941:43656175,	43653120	43653315	43653296	43653296	Frame_Shift_Del	G	-	p.M680fs
LIHC	TCGA-DD-A3A0-01	EMB	ENST00000303221.5,ENST00000508934.1,ENST00000514111.1,ENST00000505896.1	chr5	49694772:49695124:49695692:49695747:49698119:49698153,	49695693	49695747	49695705	49695705	Frame_Shift_Del	C	-	p.R318fs
LIHC	TCGA-DD-A3A0-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3	chr5	50084356:50084423:50090040:50090166:50090686:50091251,	50090041	50090166	50090108	50090108	Frame_Shift_Del	A	-	p.K270fs
LIHC	TCGA-DD-A3A0-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50122588:50122637:50123777:50123890:50124145:50124218,	50123778	50123890	50123859	50123859	Frame_Shift_Del	A	-	p.K688fs
LIHC	TCGA-DD-A3A0-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000513685.1,ENST00000296585.5	chr5	52368442:52368525:52368947:52369089:52370214:52370307,	52368948	52369089	52369050	52369050	Frame_Shift_Del	T	-	p.D844fs
LIHC	TCGA-DD-A3A0-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54552076:54552368:54555675:54555772:54557195:54557327,	54555676	54555772	54555714	54555714	Frame_Shift_Del	A	-	p.L1340fs
LIHC	TCGA-DD-A3A0-01	IL6ST	ENST00000502326.3,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000583149.1,ENST00000336909.5,ENST00000381298.2	chr5	55238497:55238579:55243320:55243417:55247291:55247334,	55243321	55243417	55243370	55243370	Frame_Shift_Del	G	-	p.L631fs
LIHC	TCGA-DD-A3A0-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56170889	56170889	Frame_Shift_Del	T	-	p.F573fs
LIHC	TCGA-DD-A3A0-01	MAP3K1	ENST00000399503.3	chr5	56181779:56181890:56183204:56183347:56184052:56184184,	56183205	56183347	56183320	56183320	Frame_Shift_Del	G	-	p.L1410fs
LIHC	TCGA-DD-A3A0-01	PDE4D	ENST00000546160.1,ENST00000505453.1,ENST00000360047.5,ENST00000309641.6,ENST00000358923.6,ENST00000317118.8,ENST00000503258.1,ENST00000502484.2,ENST00000515011.1,ENST00000507116.1,ENST00000340635.6,ENST00000405755.2	chr5	58286630:58286729:58287658:58287831:58289198:58289292,	58287659	58287831	58287786	58287786	Frame_Shift_Del	T	-	p.K354fs
LIHC	TCGA-DD-A3A0-01	DEPDC1B	ENST00000453022.2	chr5	59943224:59943360:59982788:59983054:59995872:59995961,	59982789	59983054	59982869	59982869	Frame_Shift_Del	T	-	p.K78fs
LIHC	TCGA-DD-A3A0-01	ELOVL7	ENST00000511799.1,ENST00000438340.1,ENST00000507047.1,ENST00000508821.1,ENST00000425382.1	chr5	60063649:60063730:60067729:60067920:60083160:60083258,	60067730	60067920	60067764	60067764	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-DD-A3A0-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63509787	63509787	Frame_Shift_Del	C	-	p.P212fs
LIHC	TCGA-DD-A3A0-01	RGS7BP	ENST00000334025.2	chr5	63802125:63802616:63803537:63803704:63871600:63871731,	63803538	63803704	63803582	63803582	Frame_Shift_Del	G	-	p.L70fs
LIHC	TCGA-DD-A3A0-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023971	64023971	Frame_Shift_Del	T	-	p.S81fs
LIHC	TCGA-DD-A3A0-01	SREK1IP1	ENST00000495198.2	chr5	64036962:64037027:64050141:64050189:64060871:64060948,64036962:64037027:64050141:64050189:64064331:64064446,	64050142	64050189	64050152	64050152	Frame_Shift_Del	T	-	p.K17fs
LIHC	TCGA-DD-A3A0-01	CENPK	ENST00000515497.1,ENST00000502997.1,ENST00000242872.3,ENST00000396679.1,ENST00000514814.1,ENST00000508421.1,ENST00000510693.1,ENST00000510768.1	chr5	64838628:64838675:64847390:64847463:64848319:64848376,	64847391	64847463	64847400	64847400	Frame_Shift_Del	T	-	p.T78fs
LIHC	TCGA-DD-A3A0-01	TRAPPC13	ENST00000438419.2,ENST00000399438.3,ENST00000505553.1,ENST00000512009.1,ENST00000231526.4,ENST00000508304.1,ENST00000545191.1	chr5	64931773:64931870:64933522:64933607:64942881:64943009,	64933523	64933607	64933545	64933545	Frame_Shift_Del	T	-	p.F80fs
LIHC	TCGA-DD-A3A0-01	TRAPPC13	ENST00000438419.2,ENST00000399438.3,ENST00000505553.1,ENST00000512009.1,ENST00000231526.4,ENST00000508304.1,ENST00000545191.1	chr5	64931770:64931870:64942881:64943009:64946636:64946709,64933522:64933607:64942881:64943009:64946636:64946709,	64942882	64943009	64942916	64942916	Frame_Shift_Del	T	-	p.L112fs
LIHC	TCGA-DD-A3A0-01	NLN	ENST00000506539.1,ENST00000511299.1,ENST00000502464.1,ENST00000506799.1,ENST00000380985.5	chr5	65081601:65081737:65083944:65084311:65088280:65088428,	65083945	65084311	65084138	65084138	Frame_Shift_Del	C	-	p.F384fs
LIHC	TCGA-DD-A3A0-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466528	65466528	Frame_Shift_Del	A	-	p.K413fs
LIHC	TCGA-DD-A3A0-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466697	65466697	Frame_Shift_Del	A	-	p.E469fs
LIHC	TCGA-DD-A3A0-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466714	65466714	Frame_Shift_Del	A	-	p.K476fs
LIHC	TCGA-DD-A3A0-01	MAST4	ENST00000434115.1	chr5	66212810:66212846:66259546:66259615:66282271:66282314,	66259547	66259615	66259608	66259608	Frame_Shift_Del	T	-	p.F41fs
LIHC	TCGA-DD-A3A0-01	MAST4	ENST00000405643.1	chr5	66254815:66255122:66259534:66259615:66350231:66350320,	66259535	66259615	66259608	66259608	Frame_Shift_Del	T	-	p.F41fs
LIHC	TCGA-DD-A3A0-01	MAST4	ENST00000405643.1,ENST00000403625.2,ENST00000261569.7,ENST00000403666.1,ENST00000404260.3	chr5	66441063:66441207:66445216:66445417:66448464:66448694,	66445217	66445417	66445374	66445374	Frame_Shift_Del	A	-	p.T1087fs
LIHC	TCGA-DD-A3A0-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589576	67589576	Frame_Shift_Del	A	-	p.K448fs
LIHC	TCGA-DD-A3A0-01	CCNB1	ENST00000506572.1,ENST00000256442.5	chr5	68470703:68470940:68471223:68471364:68473065:68473176,	68471224	68471364	68471341	68471341	Frame_Shift_Del	A	-	p.K354fs
LIHC	TCGA-DD-A3A0-01	CENPH	ENST00000514753.1,ENST00000283006.2	chr5	68490473:68490522:68491543:68491618:68498332:68498396,68490473:68490522:68491543:68491618:68492879:68492936,	68491544	68491618	68491561	68491561	Frame_Shift_Del	A	-	p.E86fs
LIHC	TCGA-DD-A3A0-01	CENPH	ENST00000513575.1	chr5	68490473:68490522:68491543:68491577:68492879:68492936,	68491544	68491577	68491561	68491561	Frame_Shift_Del	A	-	p.E86fs
LIHC	TCGA-DD-A3A0-01	CENPH	ENST00000283006.2,ENST00000515001.1,ENST00000502689.1	chr5	68498745:68498797:68504022:68504186:68505533:68505628,	68504023	68504186	68504076	68504076	Frame_Shift_Del	A	-	p.K181fs
LIHC	TCGA-DD-A3A0-01	CDK7	ENST00000506789.1	chr5	68546571:68546658:68548244:68548278:68550428:68550494,68531220:68531280:68548244:68548278:68550428:68550494,68531220:68531280:68548244:68548278:68553869:68553980,	68548245	68548278	68548272	68548272	Frame_Shift_Del	A	-	p.K52fs
LIHC	TCGA-DD-A3A0-01	CCDC125	ENST00000511257.1,ENST00000396499.1,ENST00000396496.2	chr5	68581163:68581294:68588014:68588189:68590619:68590727,	68588015	68588189	68588055	68588055	Frame_Shift_Del	T	-	p.K353fs
LIHC	TCGA-DD-A3A0-01	RAD17	ENST00000509734.1	chr5	68666910:68666998:68667280:68667384:68667860:68667881,68666910:68666998:68667280:68667384:68669656:68669709,	68667281	68667384	68667354	68667354	Frame_Shift_Del	T	-	p.T4fs
LIHC	TCGA-DD-A3A0-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70785230:70785509:70786810:70786958:70791076:70791235,	70786811	70786958	70786919	70786919	Frame_Shift_Del	A	-	p.E534fs
LIHC	TCGA-DD-A3A0-01	MCCC2	ENST00000510895.2,ENST00000509358.2,ENST00000505787.3,ENST00000340941.6	chr5	70900206:70900295:70922466:70922580:70927947:70928012,	70922467	70922580	70922550	70922550	Frame_Shift_Del	G	-	p.Q236fs
LIHC	TCGA-DD-A3A0-01	PTCD2	ENST00000493283.1,ENST00000511752.1	chr5	71622438:71622568:71627084:71627202:71630844:71630923,71622438:71622568:71627084:71627202:71631620:71631712,71617998:71618091:71627084:71627202:71630844:71630923,	71627085	71627202	71627154	71627154	Frame_Shift_Del	T	-	p.C140fs
LIHC	TCGA-DD-A3A0-01	PTCD2	ENST00000503315.1,ENST00000486995.1,ENST00000460837.2,ENST00000308077.5,ENST00000510676.2,ENST00000380639.5,ENST00000503868.1,ENST00000543322.1,ENST00000536805.1	chr5	71638788:71638863:71648467:71648581:71654029:71654045,	71648468	71648581	71648518	71648518	Frame_Shift_Del	A	-	p.L293fs
LIHC	TCGA-DD-A3A0-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72178890:72179059:72182896:72183049:72183904:72184130,	72182897	72183049	72183029	72183029	Frame_Shift_Del	T	-	p.V428fs
LIHC	TCGA-DD-A3A0-01	FCHO2	ENST00000512348.1	chr5	72302271:72302376:72313038:72313135:72330483:72330528,	72313039	72313135	72313125	72313125	Frame_Shift_Del	G	-	p.K262fs
LIHC	TCGA-DD-A3A0-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000430046.2	chr5	72373164:72373320:72374006:72374139:72377609:72377809,	72374007	72374139	72374077	72374077	Frame_Shift_Del	A	-	p.K641fs
LIHC	TCGA-DD-A3A0-01	TMEM171	ENST00000454765.2	chr5	72419692:72419840:72424216:72424358:72427367:72427636,72419132:72419840:72424216:72424358:72427364:72427644,	72424217	72424358	72424240	72424240	Frame_Shift_Del	C	-	p.P226fs
LIHC	TCGA-DD-A3A0-01	TMEM171	ENST00000454765.2	chr5	72419692:72419840:72424216:72424358:72427367:72427636,72419132:72419840:72424216:72424358:72427364:72427644,	72424217	72424358	72424346	72424346	Frame_Shift_Del	T	-	p.I257fs
LIHC	TCGA-DD-A3A0-01	ARHGEF28	ENST00000426542.2,ENST00000296794.6,ENST00000513042.2,ENST00000296799.4,ENST00000545377.1,ENST00000437974.1	chr5	73190261:73190400:73193786:73193918:73197008:73197109,	73193787	73193918	73193824	73193824	Frame_Shift_Del	G	-	p.M1293fs
LIHC	TCGA-DD-A3A0-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931126	73931126	Frame_Shift_Del	C	-	p.G395fs
LIHC	TCGA-DD-A3A0-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931126	73931126	Frame_Shift_Del	C	-	p.G395fs
LIHC	TCGA-DD-A3A0-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931769	73931769	Frame_Shift_Del	T	-	p.K181fs
LIHC	TCGA-DD-A3A0-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931769	73931769	Frame_Shift_Del	T	-	p.K181fs
LIHC	TCGA-DD-A3A0-01	HEXB	ENST00000504459.1,ENST00000261416.7,ENST00000511181.1	chr5	74011470:74011515:74012411:74012498:74014115:74014188,	74012412	74012498	74012424	74012424	Frame_Shift_Del	A	-	p.P140fs
LIHC	TCGA-DD-A3A0-01	COL4A3BP	ENST00000261415.7	chr5	74681726:74681859:74685416:74685512:74696029:74696046,	74685417	74685512	74685422	74685422	Frame_Shift_Del	T	-	p.M555fs
LIHC	TCGA-DD-A3A0-01	POLK	ENST00000509126.1,ENST00000515295.1,ENST00000380481.3,ENST00000241436.4,ENST00000511527.1,ENST00000510815.2,ENST00000514141.1,ENST00000505975.1,ENST00000503479.2,ENST00000504026.1	chr5	74872604:74872758:74877033:74877273:74879117:74879242,	74877034	74877273	74877181	74877181	Frame_Shift_Del	A	-	p.Q281fs
LIHC	TCGA-DD-A3A0-01	POLK	ENST00000509126.1	chr5	74886177:74886265:74892046:74893003:74893571:74893614,	74892047	74893003	74892063	74892063	Frame_Shift_Del	T	-	p.S515fs
LIHC	TCGA-DD-A3A0-01	POLK	ENST00000509126.1	chr5	74886177:74886265:74892046:74893003:74893571:74893614,	74892047	74893003	74892865	74892865	Frame_Shift_Del	A	-	p.N783fs
LIHC	TCGA-DD-A3A0-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000514350.1,ENST00000505766.1	chr5	75902003:75902128:75906844:75907008:75923234:75923321,	75906845	75907008	75906977	75906977	Frame_Shift_Del	T	-	p.V497fs
LIHC	TCGA-DD-A3A0-01	AGGF1	ENST00000312916.7	chr5	76332380:76332545:76335355:76335544:76342171:76342502,	76335356	76335544	76335488	76335488	Frame_Shift_Del	A	-	p.K273fs
LIHC	TCGA-DD-A3A0-01	AGGF1	ENST00000312916.7	chr5	76344760:76344812:76348530:76348632:76349789:76349955,	76348531	76348632	76348617	76348617	Frame_Shift_Del	A	-	p.G484fs
LIHC	TCGA-DD-A3A0-01	WDR41	ENST00000515253.1,ENST00000507029.1,ENST00000296679.4,ENST00000502528.1,ENST00000414719.2	chr5	76728717:76729112:76732085:76732219:76733160:76733249,	76732086	76732219	76732159	76732159	Frame_Shift_Del	T	-	p.K385fs
LIHC	TCGA-DD-A3A0-01	WDR41	ENST00000511630.2	chr5	76732203:76732219:76734064:76734186:76736637:76736822,	76734065	76734186	76734161	76734161	Frame_Shift_Del	C	-	p.G303fs
LIHC	TCGA-DD-A3A0-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77334866:77335098:77385216:77385323:77396776:77396849,	77385217	77385323	77385269	77385269	Frame_Shift_Del	A	-	p.L842fs
LIHC	TCGA-DD-A3A0-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77424944:77425131:77436966:77437143:77452081:77452191,	77436967	77437143	77436970	77436970	Frame_Shift_Del	T	-	p.K549fs
LIHC	TCGA-DD-A3A0-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77523967:77524063:77536685:77536760:77563343:77563419,	77536686	77536760	77536693	77536693	Frame_Shift_Del	T	-	p.N91fs
LIHC	TCGA-DD-A3A0-01	SCAMP1	ENST00000538629.1,ENST00000339292.4,ENST00000320280.7,ENST00000508822.1	chr5	77712426:77712473:77714598:77714727:77717624:77717784,	77714599	77714727	77714633	77714633	Frame_Shift_Del	T	-	p.N126fs
LIHC	TCGA-DD-A3A0-01	ARSB	ENST00000264914.4	chr5	78077674:78077797:78135178:78135249:78181406:78181650,	78135179	78135249	78135202	78135202	Frame_Shift_Del	G	-	p.P397fs
LIHC	TCGA-DD-A3A0-01	ARSB	ENST00000565165.1,ENST00000264914.4,ENST00000396151.3	chr5	78135178:78135249:78181406:78181650:78251117:78251325,	78181407	78181650	78181595	78181595	Frame_Shift_Del	T	-	p.K318fs
LIHC	TCGA-DD-A3A0-01	ARSB	ENST00000565165.1,ENST00000264914.4,ENST00000396151.3	chr5	78135178:78135249:78181406:78181650:78251117:78251325,	78181407	78181650	78181609	78181609	Frame_Shift_Del	G	-	p.L314fs
LIHC	TCGA-DD-A3A0-01	DMGDH	ENST00000524206.1,ENST00000255189.3	chr5	78347109:78347314:78350006:78350171:78351632:78351727,	78350007	78350171	78350040	78350040	Frame_Shift_Del	A	-	p.I169fs
LIHC	TCGA-DD-A3A0-01	DMGDH	ENST00000540686.1,ENST00000517853.1	chr5	78340126:78340375:78359435:78359610:78365342:78365449,78329061:78329231:78359435:78359610:78365342:78365449,	78359436	78359610	78359601	78359601	Frame_Shift_Del	T	-	p.K37fs
LIHC	TCGA-DD-A3A0-01	BHMT2	ENST00000521567.1,ENST00000255192.3	chr5	78379014:78379197:78379450:78379679:78384315:78385018,	78379451	78379679	78379634	78379634	Frame_Shift_Del	G	-	p.W322fs
LIHC	TCGA-DD-A3A0-01	BHMT	ENST00000274353.5,ENST00000523508.1	chr5	78416178:78416364:78417040:78417188:78421868:78422051,	78417041	78417188	78417078	78417078	Frame_Shift_Del	A	-	p.E172fs
LIHC	TCGA-DD-A3A0-01	JMY	ENST00000396137.4	chr5	78602197:78602284:78608225:78608321:78610079:78610674,	78608226	78608321	78608233	78608233	Frame_Shift_Del	A	-	p.E659fs
LIHC	TCGA-DD-A3A0-01	CMYA5	ENST00000446378.2,ENST00000506603.1	chr5	79086792:79086892:79089259:79089433:79095192:79096045,	79089260	79089433	79089313	79089313	Frame_Shift_Del	A	-	p.E3948fs
LIHC	TCGA-DD-A3A0-01	THBS4	ENST00000350881.2,ENST00000511733.1	chr5	79355525:79355728:79357517:79357655:79361231:79361300,	79357518	79357655	79357530	79357530	Frame_Shift_Del	C	-	p.P334fs
LIHC	TCGA-DD-A3A0-01	THBS4	ENST00000350881.2,ENST00000511733.1	chr5	79355525:79355728:79357517:79357655:79361231:79361300,	79357518	79357655	79357534	79357534	Frame_Shift_Del	G	-	p.C335fs
LIHC	TCGA-DD-A3A0-01	MSH3	ENST00000265081.6	chr5	80040324:80040434:80057364:80057497:80063751:80063939,	80057365	80057497	80057492	80057492	Frame_Shift_Del	A	-	p.K632fs
LIHC	TCGA-DD-A3A0-01	MSH3	ENST00000265081.6	chr5	80063751:80063939:80064653:80064822:80071512:80071577,	80064654	80064822	80064705	80064705	Frame_Shift_Del	A	-	p.I712fs
LIHC	TCGA-DD-A3A0-01	MSH3	ENST00000265081.6	chr5	80063751:80063939:80064653:80064822:80071512:80071577,	80064654	80064822	80064771	80064771	Frame_Shift_Del	A	-	p.R734fs
LIHC	TCGA-DD-A3A0-01	RASGRF2	ENST00000265080.4,ENST00000514946.1,ENST00000503795.1	chr5	80338695:80338802:80363850:80363998:80366310:80366400,	80363851	80363998	80363862	80363862	Frame_Shift_Del	T	-	p.I136fs
LIHC	TCGA-DD-A3A0-01	ZCCHC9	ENST00000407610.3	chr5	80597459:80597874:80600559:80600960:80604379:80604530,80597442:80597489:80600559:80600960:80604379:80604471,80597480:80597517:80600559:80600960:80604379:80604471,	80600560	80600960	80600949	80600949	Frame_Shift_Del	A	-	p.K125fs
LIHC	TCGA-DD-A3A0-01	ATG10	ENST00000458350.3,ENST00000282185.3,ENST00000513634.1	chr5	81460263:81460356:81474308:81474406:81548380:81548478,	81474309	81474406	81474402	81474402	Frame_Shift_Del	A	-	p.Q151fs
LIHC	TCGA-DD-A3A0-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815965	82815965	Frame_Shift_Del	A	-	p.N615fs
LIHC	TCGA-DD-A3A0-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815978	82815978	Frame_Shift_Del	C	-	p.S618fs
LIHC	TCGA-DD-A3A0-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82816350	82816350	Frame_Shift_Del	A	-	p.E742fs
LIHC	TCGA-DD-A3A0-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833863	82833863	Frame_Shift_Del	T	-	p.F1682fs
LIHC	TCGA-DD-A3A0-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82834454	82834454	Frame_Shift_Del	T	-	p.F1878fs
LIHC	TCGA-DD-A3A0-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836542	82836542	Frame_Shift_Del	A	-	p.K2574fs
LIHC	TCGA-DD-A3A0-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836876	82836876	Frame_Shift_Del	T	-	p.V2685fs
LIHC	TCGA-DD-A3A0-01	VCAN	ENST00000265077.3,ENST00000513016.1,ENST00000502527.2,ENST00000343200.5,ENST00000512590.2,ENST00000342785.4	chr5	82868234:82868379:82875798:82875981:82876125:82876267,	82875799	82875981	82875931	82875931	Frame_Shift_Del	G	-	p.R3338fs
LIHC	TCGA-DD-A3A0-01	COX7C	ENST00000515763.1	chr5	85913789:85913947:85915169:85915259:85916484:85916583,	85915170	85915259	85915220	85915220	Frame_Shift_Del	T	-	p.C42fs
LIHC	TCGA-DD-A3A0-01	COX7C	ENST00000511472.1	chr5	85913802:85913870:85915169:85915313:85916484:85916583,	85915170	85915313	85915220	85915220	Frame_Shift_Del	T	-	p.C42fs
LIHC	TCGA-DD-A3A0-01	COX7C	ENST00000513124.1	chr5	85913802:85913870:85915169:85915695:85916484:85916583,	85915170	85915695	85915220	85915220	Frame_Shift_Del	T	-	p.C42fs
LIHC	TCGA-DD-A3A0-01	MEF2C	ENST00000506716.1,ENST00000513252.1,ENST00000424173.2	chr5	88047682:88047860:88056804:88056942:88100414:88100618,	88056805	88056942	88056810	88056810	Frame_Shift_Del	T	-	p.I151fs
LIHC	TCGA-DD-A3A0-01	POLR3G	ENST00000504930.1,ENST00000503373.1,ENST00000399107.1	chr5	89791493:89791550:89793472:89793523:89797722:89797805,	89793473	89793523	89793517	89793517	Frame_Shift_Del	A	-	p.K118fs
LIHC	TCGA-DD-A3A0-01	FAM172A	ENST00000502503.1,ENST00000509163.1,ENST00000395965.3	chr5	93159853:93159973:93217175:93217394:93300162:93300228,93159853:93159973:93217175:93217394:93294481:93294673,	93217176	93217394	93217284	93217284	Frame_Shift_Del	T	-	p.K226fs
LIHC	TCGA-DD-A3A0-01	FAM172A	ENST00000502503.1	chr5	93388830:93388932:93410350:93410474:93447215:93447340,	93410351	93410474	93410432	93410432	Frame_Shift_Del	T	-	p.I9fs
LIHC	TCGA-DD-A3A0-01	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505208.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8,ENST00000506568.4,ENST00000512425.1	chr5	94204037:94204157:94206121:94206196:94206576:94206678,	94206122	94206196	94206138	94206138	Frame_Shift_Del	T	-	p.N767fs
LIHC	TCGA-DD-A3A0-01	FAM81B	ENST00000507832.1,ENST00000503361.1,ENST00000283357.5	chr5	94764382:94764436:94772503:94772610:94782265:94782393,	94772504	94772610	94772557	94772557	Frame_Shift_Del	T	-	p.N280fs
LIHC	TCGA-DD-A3A0-01	TTC37	ENST00000507805.1,ENST00000506007.1,ENST00000358746.2,ENST00000508181.1	chr5	94850558:94850627:94852056:94852113:94852228:94852290,	94852057	94852113	94852064	94852064	Frame_Shift_Del	T	-	p.N876fs
LIHC	TCGA-DD-A3A0-01	ARSK	ENST00000504873.1,ENST00000380009.4	chr5	94901701:94901831:94903593:94903753:94918619:94918902,	94903594	94903753	94903750	94903750	Frame_Shift_Del	T	-	p.I138fs
LIHC	TCGA-DD-A3A0-01	RFESD	ENST00000458310.1,ENST00000380005.4	chr5	94987840:94988035:94988820:94988918:94989764:94989940,	94988821	94988918	94988907	94988907	Frame_Shift_Del	T	-	p.S49fs
LIHC	TCGA-DD-A3A0-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234039	95234039	Frame_Shift_Del	T	-	p.K477fs
LIHC	TCGA-DD-A3A0-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234224	95234224	Frame_Shift_Del	A	-	p.F415fs
LIHC	TCGA-DD-A3A0-01	ELL2	ENST00000237853.4	chr5	95236659:95236784:95242226:95242486:95249474:95249638,	95242227	95242486	95242247	95242247	Frame_Shift_Del	G	-	p.L241fs
LIHC	TCGA-DD-A3A0-01	ELL2	ENST00000237853.4	chr5	95242227:95242486:95249474:95249638:95255127:95255249,	95249475	95249638	95249491	95249491	Frame_Shift_Del	G	-	p.P155fs
LIHC	TCGA-DD-A3A0-01	PCSK1	ENST00000311106.3,ENST00000508626.1	chr5	95743926:95744027:95746477:95746690:95748021:95748194,	95746478	95746690	95746679	95746679	Frame_Shift_Del	C	-	p.G298fs
LIHC	TCGA-DD-A3A0-01	ERAP1	ENST00000508227.1	chr5	96136636:96136703:96139105:96139530:96143562:96143612,	96139106	96139530	96139250	96139250	Frame_Shift_Del	C	-	p.R127fs
LIHC	TCGA-DD-A3A0-01	ERAP1	ENST00000443439.2	chr5	96136636:96136703:96139105:96139646:96143562:96143612,	96139106	96139646	96139250	96139250	Frame_Shift_Del	C	-	p.R127fs
LIHC	TCGA-DD-A3A0-01	ERAP1	ENST00000508227.1	chr5	96136636:96136703:96139105:96139530:96143562:96143612,	96139106	96139530	96139397	96139397	Frame_Shift_Del	C	-	p.G78fs
LIHC	TCGA-DD-A3A0-01	ERAP1	ENST00000443439.2	chr5	96136636:96136703:96139105:96139646:96143562:96143612,	96139106	96139646	96139397	96139397	Frame_Shift_Del	C	-	p.G78fs
LIHC	TCGA-DD-A3A0-01	ERAP1	ENST00000508227.1	chr5	96136636:96136703:96139105:96139530:96143562:96143612,	96139106	96139530	96139451	96139451	Frame_Shift_Del	G	-	p.P60fs
LIHC	TCGA-DD-A3A0-01	ERAP1	ENST00000443439.2	chr5	96136636:96136703:96139105:96139646:96143562:96143612,	96139106	96139646	96139451	96139451	Frame_Shift_Del	G	-	p.P60fs
LIHC	TCGA-DD-A3A0-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315017	96315017	Frame_Shift_Del	G	-	p.E65fs
LIHC	TCGA-DD-A3A0-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315138	96315138	Frame_Shift_Del	C	-	p.P106fs
LIHC	TCGA-DD-A3A0-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315167	96315167	Frame_Shift_Del	T	-	p.A115fs
LIHC	TCGA-DD-A3A0-01	LIX1	ENST00000274382.4	chr5	96440893:96440989:96443063:96443204:96460169:96460333,	96443064	96443204	96443137	96443137	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A3A0-01	CHD1	ENST00000512844.1	chr5	98194667:98194719:98195675:98195772:98199111:98199290,98194667:98194719:98195675:98195772:98204198:98204243,	98195676	98195772	98195724	98195724	Frame_Shift_Del	T	-	p.K1492fs
LIHC	TCGA-DD-A3A0-01	SLCO6A1	ENST00000379807.3,ENST00000514551.1,ENST00000389019.3,ENST00000506729.1	chr5	101755626:101755725:101774320:101774465:101794085:101794195,	101774321	101774465	101774421	101774421	Frame_Shift_Del	T	-	p.K392fs
LIHC	TCGA-DD-A3A0-01	PAM	ENST00000438793.3,ENST00000502472.1,ENST00000509636.1,ENST00000346918.2,ENST00000274392.9,ENST00000345721.2,ENST00000304400.7,ENST00000379787.4,ENST00000348126.2,ENST00000506260.1,ENST00000455264.2	chr5	102249637:102249725:102260660:102260746:102262288:102262372,	102260661	102260746	102260725	102260725	Frame_Shift_Del	C	-	p.P142fs
LIHC	TCGA-DD-A3A0-01	PAM	ENST00000510006.1	chr5	102343272:102343361:102345454:102345570:102355493:102355547,	102345455	102345570	102345486	102345486	Frame_Shift_Del	T	-	p.H749fs
LIHC	TCGA-DD-A3A0-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1	chr5	102502882:102503024:102503775:102503999:102508858:102508986,	102503776	102503999	102503844	102503844	Frame_Shift_Del	T	-	p.F711fs
LIHC	TCGA-DD-A3A0-01	PPIP5K2	ENST00000321521.9,ENST00000414217.1	chr5	102520372:102520445:102522020:102522140:102523014:102523077,102520372:102520445:102522020:102522140:102526542:102526683,	102522021	102522140	102522110	102522110	Frame_Shift_Del	A	-	p.K1088fs
LIHC	TCGA-DD-A3A0-01	EFNA5	ENST00000333274.6,ENST00000510359.1	chr5	106716938:106717077:106722935:106723016:106723406:106723472,	106722936	106723016	106722953	106722953	Frame_Shift_Del	T	-	p.N183fs
LIHC	TCGA-DD-A3A0-01	EFNA5	ENST00000509503.1	chr5	106723406:106723472:106762917:106763210:107006189:107006328,	106762918	106763210	106762985	106762985	Frame_Shift_Del	T	-	p.K117fs
LIHC	TCGA-DD-A3A0-01	MAN2A1	ENST00000261483.4	chr5	109103235:109103409:109106055:109106242:109110488:109110666,	109106056	109106242	109106150	109106150	Frame_Shift_Del	C	-	p.C368fs
LIHC	TCGA-DD-A3A0-01	MAN2A1	ENST00000261483.4	chr5	109124634:109124749:109125160:109125228:109152973:109153139,	109125161	109125228	109125195	109125195	Frame_Shift_Del	A	-	p.Q637fs
LIHC	TCGA-DD-A3A0-01	MAN2A1	ENST00000261483.4	chr5	109124634:109124749:109125160:109125228:109152973:109153139,	109125161	109125228	109125205	109125205	Frame_Shift_Del	A	-	p.I641fs
LIHC	TCGA-DD-A3A0-01	WDR36	ENST00000506538.2,ENST00000513710.2	chr5	110448772:110448852:110454710:110454818:110456193:110456291,	110454711	110454818	110454724	110454724	Frame_Shift_Del	T	-	p.F660fs
LIHC	TCGA-DD-A3A0-01	WDR36	ENST00000506538.2,ENST00000513710.2	chr5	110448772:110448852:110454710:110454818:110456193:110456291,	110454711	110454818	110454809	110454809	Frame_Shift_Del	T	-	p.I688fs
LIHC	TCGA-DD-A3A0-01	EPB41L4A	ENST00000507810.1,ENST00000261486.5	chr5	111540071:111540185:111541117:111541201:111545588:111545669,	111541118	111541201	111541137	111541137	Frame_Shift_Del	C	-	p.E416fs
LIHC	TCGA-DD-A3A0-01	EPB41L4A	ENST00000261486.5	chr5	111545588:111545679:111570330:111570452:111575356:111575434,	111570331	111570452	111570343	111570343	Frame_Shift_Del	T	-	p.T359fs
LIHC	TCGA-DD-A3A0-01	APC	ENST00000508624.1,ENST00000257430.4	chr5	112043218:112043579:112090569:112090722:112102022:112102080,112074049:112074157:112090569:112090722:112102022:112102080,112073591:112073622:112090569:112090722:112102022:112102080,	112090570	112090722	112090617	112090617	Frame_Shift_Del	A	-	p.L10fs
LIHC	TCGA-DD-A3A0-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128171	112128171	Frame_Shift_Del	A	-	p.E225fs
LIHC	TCGA-DD-A3A0-01	REEP5	ENST00000261482.4,ENST00000379638.4	chr5	112214529:112214532:112222711:112222880:112238076:112238215,	112222712	112222880	112222801	112222801	Frame_Shift_Del	A	-	p.F145fs
LIHC	TCGA-DD-A3A0-01	YTHDC2	ENST00000514720.1,ENST00000515883.1,ENST00000161863.4	chr5	112850968:112851059:112860677:112860874:112862282:112862400,	112860678	112860874	112860794	112860794	Frame_Shift_Del	A	-	p.Q132fs
LIHC	TCGA-DD-A3A0-01	YTHDC2	ENST00000515883.1,ENST00000161863.4,ENST00000503857.1	chr5	112870001:112870104:112871338:112871495:112874770:112874878,	112871339	112871495	112871395	112871395	Frame_Shift_Del	T	-	p.D334fs
LIHC	TCGA-DD-A3A0-01	YTHDC2	ENST00000515883.1,ENST00000161863.4,ENST00000503857.1	chr5	112874770:112874878:112876664:112876813:112878064:112878200,	112876665	112876813	112876707	112876707	Frame_Shift_Del	A	-	p.Q418fs
LIHC	TCGA-DD-A3A0-01	YTHDC2	ENST00000161863.4	chr5	112915282:112915392:112917113:112917406:112919998:112920176,	112917114	112917406	112917159	112917159	Frame_Shift_Del	T	-	p.F1134fs
LIHC	TCGA-DD-A3A0-01	PGGT1B	ENST00000419445.1	chr5	114552561:114552670:114566672:114566718:114572086:114572219,114557520:114557705:114566672:114566718:114572086:114572219,	114566673	114566718	114566693	114566693	Frame_Shift_Del	C	-	p.G213fs
LIHC	TCGA-DD-A3A0-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205768	115205768	Frame_Shift_Del	T	-	p.Y72fs
LIHC	TCGA-DD-A3A0-01	COMMD10	ENST00000274458.4,ENST00000507356.1,ENST00000515539.1	chr5	115423193:115423284:115426775:115426886:115428241:115428392,	115426776	115426886	115426872	115426872	Frame_Shift_Del	T	-	p.F77fs
LIHC	TCGA-DD-A3A0-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000503802.1	chr5	118437629:118437701:118440874:118440953:118445845:118445978,	118440875	118440953	118440947	118440947	Frame_Shift_Del	C	-	p.P120fs
LIHC	TCGA-DD-A3A0-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000514151.1,ENST00000503802.1	chr5	118440917:118440953:118445845:118445978:118450169:118450236,	118445846	118445978	118445928	118445928	Frame_Shift_Del	A	-	p.L149fs
LIHC	TCGA-DD-A3A0-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118505986	118505986	Frame_Shift_Del	T	-	p.F1834fs
LIHC	TCGA-DD-A3A0-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506318	118506318	Frame_Shift_Del	A	-	p.S1944fs
LIHC	TCGA-DD-A3A0-01	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121758562:121759434:121767663:121767777,121739487:121739560:121758562:121759434:121761046:121761226,	121758563	121759434	121758754	121758754	Frame_Shift_Del	G	-	p.G156fs
LIHC	TCGA-DD-A3A0-01	CSNK1G3	ENST00000361991.2,ENST00000395411.1,ENST00000395412.1,ENST00000360683.2	chr5	122927012:122927108:122930732:122930828:122940417:122940524,	122930733	122930828	122930775	122930775	Frame_Shift_Del	C	-	p.P377fs
LIHC	TCGA-DD-A3A0-01	ZNF608	ENST00000505686.1	chr5	123979203:123979376:123979936:123980354:123985302:123985390,	123979937	123980354	123980259	123980259	Frame_Shift_Del	T	-	p.K1267fs
LIHC	TCGA-DD-A3A0-01	ZNF608	ENST00000505686.1	chr5	123979203:123979376:123979936:123980354:123985302:123985390,	123979937	123980354	123980293	123980293	Frame_Shift_Del	T	-	p.K1256fs
LIHC	TCGA-DD-A3A0-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123982583	123982583	Frame_Shift_Del	T	-	p.N1165fs
LIHC	TCGA-DD-A3A0-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124079932	124079932	Frame_Shift_Del	G	-	p.H251fs
LIHC	TCGA-DD-A3A0-01	LMNB1	ENST00000504788.1,ENST00000261366.5,ENST00000460265.1	chr5	126158472:126158577:126161679:126161799:126168385:126168493,	126161680	126161799	126161712	126161712	Frame_Shift_Del	C	-	p.S508fs
LIHC	TCGA-DD-A3A0-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126859151:126859274:126860222:126860612:126862309:126862470,	126860223	126860612	126860478	126860478	Frame_Shift_Del	T	-	p.L121fs
LIHC	TCGA-DD-A3A0-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126862309:126862470:126865985:126866088:126869314:126869478,	126865986	126866088	126866030	126866030	Frame_Shift_Del	A	-	p.T233fs
LIHC	TCGA-DD-A3A0-01	SLC12A2	ENST00000262461.2,ENST00000509205.1	chr5	127510235:127510358:127512796:127512844:127514258:127514381,	127512797	127512844	127512838	127512838	Frame_Shift_Del	A	-	p.K992fs
LIHC	TCGA-DD-A3A0-01	FNIP1	ENST00000511848.1,ENST00000510461.1,ENST00000307954.8	chr5	131044893:131044965:131046270:131046354:131052257:131052349,	131046271	131046354	131046275	131046275	Frame_Shift_Del	A	-	p.F189fs
LIHC	TCGA-DD-A3A0-01	P4HA2	ENST00000379104.2,ENST00000166534.4,ENST00000360568.3,ENST00000379086.1,ENST00000401867.1,ENST00000379100.2	chr5	131544830:131545024:131545976:131546216:131549608:131549746,	131545977	131546216	131546139	131546139	Frame_Shift_Del	A	-	p.Y183fs
LIHC	TCGA-DD-A3A0-01	SLC22A5	ENST00000415928.1,ENST00000435065.2	chr5	131705967:131706057:131713855:131713927:131714069:131714173,	131713856	131713927	131713883	131713883	Frame_Shift_Del	A	-	p.K141fs
LIHC	TCGA-DD-A3A0-01	RAD50	ENST00000265335.6,ENST00000378823.3,ENST00000533482.1	chr5	131925322:131925529:131926915:131927098:131927568:131927726,	131926916	131927098	131926940	131926940	Frame_Shift_Del	A	-	p.K354fs
LIHC	TCGA-DD-A3A0-01	SEPT8	ENST00000448933.1,ENST00000296873.7,ENST00000378706.1,ENST00000378721.4,ENST00000378699.2,ENST00000378701.1,ENST00000458488.2,ENST00000378719.2	chr5	132097192:132097318:132097491:132097588:132098175:132098337,	132097492	132097588	132097503	132097503	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-DD-A3A0-01	SHROOM1	ENST00000378676.1	chr5	132159314:132159456:132159541:132160111:132160306:132160308,132159314:132159456:132159541:132160111:132160709:132160765,	132159542	132160111	132159656	132159656	Frame_Shift_Del	G	-	p.P566fs
LIHC	TCGA-DD-A3A0-01	SHROOM1	ENST00000378679.3,ENST00000319854.3	chr5	132159972:132160111:132160306:132160513:132160709:132160765,	132160307	132160513	132160332	132160332	Frame_Shift_Del	G	-	p.H406fs
LIHC	TCGA-DD-A3A0-01	UQCRQ	ENST00000378667.1	chr5	132202348:132202383:132202560:132202727:132203179:132203375,	132202561	132202727	132202688	132202688	Frame_Shift_Del	C	-	p.L39fs
LIHC	TCGA-DD-A3A0-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232082	132232082	Frame_Shift_Del	T	-	p.K747fs
LIHC	TCGA-DD-A3A0-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232439	132232439	Frame_Shift_Del	T	-	p.K629fs
LIHC	TCGA-DD-A3A0-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232627	132232627	Frame_Shift_Del	T	-	p.K565fs
LIHC	TCGA-DD-A3A0-01	HSPA4	ENST00000304858.2	chr5	132403108:132403249:132406065:132406188:132408921:132409021,	132406066	132406188	132406121	132406121	Frame_Shift_Del	T	-	p.L122fs
LIHC	TCGA-DD-A3A0-01	HSPA4	ENST00000304858.2	chr5	132426884:132427066:132428391:132428481:132431789:132431942,	132428392	132428481	132428453	132428453	Frame_Shift_Del	A	-	p.E541fs
LIHC	TCGA-DD-A3A0-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316639	133316639	Frame_Shift_Del	T	-	p.N111fs
LIHC	TCGA-DD-A3A0-01	VDAC1	ENST00000466080.1,ENST00000395047.2,ENST00000395044.3,ENST00000265333.3,ENST00000425992.1	chr5	133326692:133326845:133327996:133328046:133328636:133328706,	133327997	133328046	133328012	133328012	Frame_Shift_Del	T	-	p.K34fs
LIHC	TCGA-DD-A3A0-01	VDAC1	ENST00000466080.1,ENST00000395047.2,ENST00000395044.3,ENST00000265333.3,ENST00000425992.1	chr5	133326692:133326845:133327996:133328046:133328636:133328706,	133327997	133328046	133328017	133328017	Frame_Shift_Del	T	-	p.T33fs
LIHC	TCGA-DD-A3A0-01	CDKL3	ENST00000435211.1,ENST00000265334.4,ENST00000523832.1,ENST00000521118.1,ENST00000523054.1	chr5	133657481:133657594:133685939:133686118:133695587:133695782,	133685940	133686118	133686084	133686084	Frame_Shift_Del	A	-	p.L132fs
LIHC	TCGA-DD-A3A0-01	SAR1B	ENST00000503318.1,ENST00000439578.1,ENST00000505758.1,ENST00000502286.1,ENST00000402673.2	chr5	133945299:133945364:133948380:133948446:133956622:133956691,	133948381	133948446	133948424	133948424	Frame_Shift_Del	A	-	p.A67fs
LIHC	TCGA-DD-A3A0-01	SAR1B	ENST00000503318.1,ENST00000439578.1,ENST00000505758.1,ENST00000502286.1,ENST00000402673.2	chr5	133948380:133948446:133956622:133956742:133959651:133959727,	133956623	133956742	133956663	133956663	Frame_Shift_Del	T	-	p.K46fs
LIHC	TCGA-DD-A3A0-01	SEC24A	ENST00000398844.2	chr5	134033588:134033747:134039448:134039622:134041016:134041127,	134039449	134039622	134039478	134039478	Frame_Shift_Del	T	-	p.F767fs
LIHC	TCGA-DD-A3A0-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4	chr5	134106592:134106689:134109385:134109551:134113263:134113415,	134109386	134109551	134109494	134109494	Frame_Shift_Del	A	-	p.K187fs
LIHC	TCGA-DD-A3A0-01	SLC25A48	ENST00000274513.5,ENST00000420621.1,ENST00000412661.2,ENST00000433282.2	chr5	135170415:135170582:135178104:135178148:135186113:135186167,	135178105	135178148	135178130	135178130	Frame_Shift_Del	C	-	p.H24fs
LIHC	TCGA-DD-A3A0-01	SMAD5	ENST00000514641.2,ENST00000545279.1,ENST00000545620.1	chr5	135489280:135489852:135496544:135496796:135498960:135499080,	135496545	135496796	135496755	135496755	Frame_Shift_Del	C	-	p.S205fs
LIHC	TCGA-DD-A3A0-01	MYOT	ENST00000239926.4,ENST00000515645.1,ENST00000421631.2	chr5	137219072:137219280:137221736:137221902:137222552:137222686,	137221737	137221902	137221784	137221784	Frame_Shift_Del	A	-	p.K359fs
LIHC	TCGA-DD-A3A0-01	FAM13B	ENST00000425075.2,ENST00000033079.3,ENST00000420893.2	chr5	137342678:137342836:137346696:137346838:137347456:137347634,	137346697	137346838	137346767	137346767	Frame_Shift_Del	T	-	p.N207fs
LIHC	TCGA-DD-A3A0-01	FAM13B	ENST00000508403.1	chr5	137354167:137354203:137354643:137354835:137356719:137356886,137354167:137354203:137354643:137354835:137355569:137355666,	137354644	137354835	137354786	137354786	Frame_Shift_Del	G	-	p.S6fs
LIHC	TCGA-DD-A3A0-01	NME5	ENST00000265191.2	chr5	137464167:137464268:137464951:137465157:137474340:137474474,	137464952	137465157	137465149	137465149	Frame_Shift_Del	T	-	p.K46fs
LIHC	TCGA-DD-A3A0-01	BRD8	ENST00000506167.1	chr5	137498818:137499033:137499775:137499822:137500008:137500102,137499275:137499332:137499775:137499822:137500008:137500102,	137499776	137499822	137499812	137499812	Frame_Shift_Del	T	-	p.K612fs
LIHC	TCGA-DD-A3A0-01	GFRA3	ENST00000274721.3	chr5	137593327:137593640:137595245:137595338:137599949:137600237,	137595246	137595338	137595279	137595279	Frame_Shift_Del	T	-	p.M147fs
LIHC	TCGA-DD-A3A0-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137728859:137729061:137733866:137734081:137735548:137735588,	137733867	137734081	137733882	137733882	Frame_Shift_Del	A	-	p.R949fs
LIHC	TCGA-DD-A3A0-01	REEP2	ENST00000378339.2,ENST00000254901.5,ENST00000507635.1,ENST00000504163.1,ENST00000506158.1	chr5	137780922:137781064:137781156:137781287:137781371:137781412,	137781157	137781287	137781267	137781267	Frame_Shift_Del	A	-	p.K227fs
LIHC	TCGA-DD-A3A0-01	HSPA9	ENST00000297185.3,ENST00000507097.1,ENST00000504902.1	chr5	137903143:137903250:137903337:137903411:137904613:137904738,	137903338	137903411	137903384	137903384	Frame_Shift_Del	T	-	p.N188fs
LIHC	TCGA-DD-A3A0-01	CTNNA1	ENST00000522013.1,ENST00000540387.1,ENST00000517533.1,ENST00000518825.1,ENST00000523298.1,ENST00000355078.5,ENST00000521724.1,ENST00000520400.1,ENST00000302763.7,ENST00000523685.1	chr5	138223178:138223331:138240037:138240130:138253430:138253468,	138240038	138240130	138240082	138240082	Frame_Shift_Del	A	-	p.V447fs
LIHC	TCGA-DD-A3A0-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643906	138643906	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-DD-A3A0-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643906	138643906	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-DD-A3A0-01	SPATA24	ENST00000451821.2,ENST00000507779.2,ENST00000514983.1,ENST00000450845.2	chr5	138737605:138737734:138738316:138738382:138739632:138739776,	138738317	138738382	138738350	138738350	Frame_Shift_Del	T	-	p.K50fs
LIHC	TCGA-DD-A3A0-01	TMEM173	ENST00000510817.1,ENST00000515507.1,ENST00000330794.4	chr5	138860770:138860927:138861062:138861289:138861794:138861881,	138861063	138861289	138861246	138861246	Frame_Shift_Del	C	-	p.G15fs
LIHC	TCGA-DD-A3A0-01	TMEM173	ENST00000514119.1,ENST00000511850.1	chr5	138860374:138860483:138860743:138861289:138861794:138861881,	138860744	138861289	138861246	138861246	Frame_Shift_Del	C	-	p.G15fs
LIHC	TCGA-DD-A3A0-01	UBE2D2	ENST00000505548.1,ENST00000505007.1,ENST00000511691.1,ENST00000398733.3,ENST00000253815.2,ENST00000511725.1,ENST00000398734.4	chr5	138994170:138994202:138994281:138994359:138994445:138994551,	138994282	138994359	138994329	138994329	Frame_Shift_Del	C	-	p.F27fs
LIHC	TCGA-DD-A3A0-01	NRG2	ENST00000289409.4	chr5	139235333:139235363:139244699:139244758:139245133:139245210,139235333:139235363:139244699:139244758:139251305:139251388,	139244700	139244758	139244736	139244736	Frame_Shift_Del	C	-	p.G404fs
LIHC	TCGA-DD-A3A0-01	HBEGF	ENST00000507104.1	chr5	139722219:139722397:139725495:139725669:139725867:139726188,	139725496	139725669	139725597	139725597	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-DD-A3A0-01	SLC4A9	ENST00000507527.1,ENST00000230993.6	chr5	139739799:139740051:139740324:139740557:139740838:139740952,	139740325	139740557	139740447	139740447	Frame_Shift_Del	C	-	p.A118fs
LIHC	TCGA-DD-A3A0-01	SLC4A9	ENST00000506545.1,ENST00000432095.2	chr5	139739799:139740051:139740396:139740557:139740838:139740952,	139740397	139740557	139740447	139740447	Frame_Shift_Del	C	-	p.A118fs
LIHC	TCGA-DD-A3A0-01	SLC4A9	ENST00000507527.1,ENST00000230993.6,ENST00000506757.2	chr5	139745104:139745154:139745418:139745607:139745735:139745849,139745104:139745163:139745418:139745607:139745735:139745849,	139745419	139745607	139745554	139745554	Frame_Shift_Del	T	-	p.F641fs
LIHC	TCGA-DD-A3A0-01	ANKHD1	ENST00000435794.1,ENST00000360839.2,ENST00000297183.6	chr5	139907768:139909381:139914946:139915123:139916973:139917174,	139914947	139915123	139915034	139915034	Frame_Shift_Del	T	-	p.V2313fs
LIHC	TCGA-DD-A3A0-01	ANKHD1	ENST00000435794.1,ENST00000360839.2,ENST00000297183.6	chr5	139907768:139909381:139914946:139915123:139916973:139917174,	139914947	139915123	139915086	139915086	Frame_Shift_Del	T	-	p.H2330fs
LIHC	TCGA-DD-A3A0-01	APBB3	ENST00000356738.2,ENST00000354402.5,ENST00000515056.1,ENST00000412920.3,ENST00000357560.4,ENST00000511896.1,ENST00000509914.1,ENST00000510241.1,ENST00000467078.1,ENST00000508496.2	chr5	139939985:139940089:139940223:139940339:139940602:139940686,	139940224	139940339	139940230	139940230	Frame_Shift_Del	G	-	p.P342fs
LIHC	TCGA-DD-A3A0-01	APBB3	ENST00000507279.1,ENST00000356738.2,ENST00000354402.5,ENST00000511201.2,ENST00000412920.3,ENST00000358580.5,ENST00000506958.1,ENST00000357560.4,ENST00000506289.1,ENST00000513507.1,ENST00000509914.1,ENST00000510241.1,ENST00000467078.1,ENST00000505617.1	chr5	139942247:139942308:139943178:139943255:139943336:139943500,	139943179	139943255	139943223	139943223	Frame_Shift_Del	G	-	p.P82fs
LIHC	TCGA-DD-A3A0-01	TMCO6	ENST00000537378.1,ENST00000252100.6,ENST00000510336.1,ENST00000394671.3	chr5	140023684:140023779:140024157:140024325:140024569:140024987,	140024158	140024325	140024257	140024257	Frame_Shift_Del	T	-	p.F434fs
LIHC	TCGA-DD-A3A0-01	HARS	ENST00000307633.3,ENST00000457527.2,ENST00000504366.1,ENST00000504156.1,ENST00000506579.1,ENST00000438307.2,ENST00000431330.2,ENST00000507746.1,ENST00000415192.2	chr5	140056573:140056701:140056911:140057005:140057239:140057338,	140056912	140057005	140056975	140056975	Frame_Shift_Del	C	-	p.V185fs
LIHC	TCGA-DD-A3A0-01	HARS2	ENST00000437649.2	chr5	140071198:140071341:140073175:140073250:140073519:140073572,	140073176	140073250	140073229	140073229	Frame_Shift_Del	T	-	p.N54fs
LIHC	TCGA-DD-A3A0-01	HARS2	ENST00000520095.1,ENST00000510104.1	chr5	140071198:140071341:140073075:140073250:140073519:140073572,	140073076	140073250	140073229	140073229	Frame_Shift_Del	T	-	p.N54fs
LIHC	TCGA-DD-A3A0-01	RELL2	ENST00000518025.1	chr5	141018361:141018427:141019030:141019216:141019486:141019569,	141019031	141019216	141019063	141019063	Frame_Shift_Del	C	-	p.A117fs
LIHC	TCGA-DD-A3A0-01	PCDH1	ENST00000287008.3	chr5	141232938:141234001:141236816:141237036:141242796:141244992,	141236817	141237036	141236973	141236973	Frame_Shift_Del	G	-	p.Q1055fs
LIHC	TCGA-DD-A3A0-01	PCDH1	ENST00000287008.3,ENST00000394536.3	chr5	141244599:141244992:141248133:141248996:141257787:141257954,	141248134	141248996	141248203	141248203	Frame_Shift_Del	G	-	p.P278fs
LIHC	TCGA-DD-A3A0-01	RNF14	ENST00000515613.1	chr5	141357867:141358395:141359687:141359916:141362944:141363117,141354368:141354520:141359687:141359916:141362944:141363117,141353147:141353307:141359687:141359916:141362944:141363117,	141359688	141359916	141359780	141359780	Frame_Shift_Del	C	-	p.C309fs
LIHC	TCGA-DD-A3A0-01	FGF1	ENST00000337706.2	chr5	141980364:141980370:141993523:141993726:142077186:142077280,141980364:141980370:141993523:141993726:142065521:142065616,	141993524	141993726	141993680	141993680	Frame_Shift_Del	C	-	p.E5fs
LIHC	TCGA-DD-A3A0-01	ARHGAP26	ENST00000274498.4,ENST00000475287.1,ENST00000378004.3,ENST00000378013.2	chr5	142258938:142259010:142264862:142264964:142273802:142273900,	142264863	142264964	142264915	142264915	Frame_Shift_Del	A	-	p.E146fs
LIHC	TCGA-DD-A3A0-01	ARHGAP26	ENST00000274498.4,ENST00000378004.3	chr5	142281499:142281604:142283104:142283234:142287268:142287369,	142283105	142283234	142283153	142283153	Frame_Shift_Del	A	-	p.K252fs
LIHC	TCGA-DD-A3A0-01	NR3C1	ENST00000503201.1	chr5	142693566:142693733:142779220:142780417:142783940:142784035,	142779221	142780417	142779636	142779636	Frame_Shift_Del	T	-	p.I257fs
LIHC	TCGA-DD-A3A0-01	PRELID2	ENST00000334744.4,ENST00000358004.2,ENST00000505416.1,ENST00000394450.2	chr5	145144493:145144563:145176004:145176110:145197456:145197617,	145176005	145176110	145176062	145176062	Frame_Shift_Del	A	-	p.F151fs
LIHC	TCGA-DD-A3A0-01	PRELID2	ENST00000511435.1,ENST00000334744.4,ENST00000358004.2,ENST00000505416.1,ENST00000515475.1	chr5	145199507:145199581:145202639:145202697:145214739:145214796,	145202640	145202697	145202643	145202643	Frame_Shift_Del	T	-	p.R44fs
LIHC	TCGA-DD-A3A0-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145383620:145383716:145393309:145393624:145427334:145427426,	145393310	145393624	145393369	145393369	Frame_Shift_Del	A	-	p.T268fs
LIHC	TCGA-DD-A3A0-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145383620:145383716:145393309:145393624:145427334:145427426,	145393310	145393624	145393539	145393539	Frame_Shift_Del	C	-	p.T325fs
LIHC	TCGA-DD-A3A0-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145427334:145427426:145428637:145428808:145435543:145435641,	145428638	145428808	145428716	145428716	Frame_Shift_Del	G	-	p.L410fs
LIHC	TCGA-DD-A3A0-01	SH3RF2	ENST00000511705.1	chr5	145435543:145435776:145439428:145439787:145441988:145442297,145435543:145435794:145439428:145439787:145441988:145442297,	145439429	145439787	145439558	145439558	Frame_Shift_Del	C	-	p.S562fs
LIHC	TCGA-DD-A3A0-01	SH3RF2	ENST00000511705.1	chr5	145435543:145435776:145439428:145439787:145441988:145442297,145435543:145435794:145439428:145439787:145441988:145442297,	145439429	145439787	145439604	145439604	Frame_Shift_Del	G	-	p.T577fs
LIHC	TCGA-DD-A3A0-01	JAKMIP2	ENST00000265272.5,ENST00000507386.1,ENST00000333010.6	chr5	146997473:146997677:147000228:147000306:147003183:147003252,	147000229	147000306	147000286	147000286	Frame_Shift_Del	T	-	p.K695fs
LIHC	TCGA-DD-A3A0-01	SPINK5	ENST00000481286.1,ENST00000398454.1,ENST00000476608.1,ENST00000256084.7,ENST00000508733.1,ENST00000507988.1,ENST00000359874.3	chr5	147473916:147474044:147475380:147475468:147477429:147477557,	147475381	147475468	147475440	147475440	Frame_Shift_Del	A	-	p.E285fs
LIHC	TCGA-DD-A3A0-01	ABLIM3	ENST00000504238.1,ENST00000356541.3,ENST00000515171.1	chr5	148612815:148612863:148619321:148619451:148624443:148624578,	148619322	148619451	148619410	148619410	Frame_Shift_Del	C	-	p.S388fs
LIHC	TCGA-DD-A3A0-01	SLC6A7	ENST00000230671.2,ENST00000524041.1	chr5	149581909:149582013:149582141:149582266:149583229:149583342,	149582142	149582266	149582194	149582194	Frame_Shift_Del	T	-	p.F339fs
LIHC	TCGA-DD-A3A0-01	SLC6A7	ENST00000230671.2,ENST00000524041.1	chr5	149581909:149582013:149582141:149582266:149583229:149583342,	149582142	149582266	149582235	149582235	Frame_Shift_Del	G	-	p.L352fs
LIHC	TCGA-DD-A3A0-01	CAMK2A	ENST00000351010.6,ENST00000398376.3,ENST00000348628.6	chr5	149607754:149607849:149610867:149610943:149618262:149618311,	149610868	149610943	149610921	149610921	Frame_Shift_Del	T	-	p.K352fs
LIHC	TCGA-DD-A3A0-01	TCOF1	ENST00000377797.3,ENST00000515035.1,ENST00000513346.1,ENST00000451292.1,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149749091:149749165:149751568:149751799:149753736:149753949,	149751569	149751799	149751599	149751599	Frame_Shift_Del	A	-	p.K224fs
LIHC	TCGA-DD-A3A0-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000514442.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149754516:149754726:149754901:149755117:149755283:149755472,	149754902	149755117	149754917	149754917	Frame_Shift_Del	A	-	p.K502fs
LIHC	TCGA-DD-A3A0-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000427724.2	chr5	149772985:149773115:149775844:149776405:149777916:149777932,	149775845	149776405	149775849	149775849	Frame_Shift_Del	A	-	p.G1299fs
LIHC	TCGA-DD-A3A0-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000427724.2	chr5	149772985:149773115:149775844:149776405:149777916:149777932,	149775845	149776405	149776081	149776081	Frame_Shift_Del	A	-	p.K1377fs
LIHC	TCGA-DD-A3A0-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028049	150028049	Frame_Shift_Del	A	-	p.Q315fs
LIHC	TCGA-DD-A3A0-01	DCTN4	ENST00000446090.2	chr5	150133040:150133219:150135978:150136049:150138420:150138582,	150135979	150136049	150136015	150136015	Frame_Shift_Del	T	-	p.N57fs
LIHC	TCGA-DD-A3A0-01	GPX3	ENST00000388825.4,ENST00000517973.1	chr5	150406526:150406578:150406992:150407092:150407469:150407727,	150406993	150407092	150407042	150407042	Frame_Shift_Del	A	-	p.K137fs
LIHC	TCGA-DD-A3A0-01	ANXA6	ENST00000523714.1,ENST00000521512.1,ENST00000356496.5,ENST00000354546.5,ENST00000519644.2	chr5	150498934:150498951:150501707:150501821:150502477:150502572,	150501708	150501821	150501806	150501806	Frame_Shift_Del	G	-	p.L417fs
LIHC	TCGA-DD-A3A0-01	CCDC69	ENST00000355417.2,ENST00000521308.1	chr5	150563904:150564002:150564982:150565102:150565583:150565685,	150564983	150565102	150565012	150565012	Frame_Shift_Del	C	-	p.D196fs
LIHC	TCGA-DD-A3A0-01	CCDC69	ENST00000518189.1	chr5	150563904:150564002:150565007:150565102:150565583:150565685,	150565008	150565102	150565012	150565012	Frame_Shift_Del	C	-	p.D196fs
LIHC	TCGA-DD-A3A0-01	SLC36A1	ENST00000243389.3,ENST00000520701.1,ENST00000521925.1,ENST00000521351.1,ENST00000429484.2	chr5	150843113:150843204:150844074:150844163:150844634:150844710,	150844075	150844163	150844081	150844081	Frame_Shift_Del	C	-	p.P81fs
LIHC	TCGA-DD-A3A0-01	SLC36A1	ENST00000243389.3,ENST00000520701.1,ENST00000521925.1,ENST00000521351.1,ENST00000429484.2	chr5	150843113:150843204:150844074:150844163:150844634:150844710,	150844075	150844163	150844125	150844125	Frame_Shift_Del	G	-	p.M95fs
LIHC	TCGA-DD-A3A0-01	GRIA1	ENST00000518142.1,ENST00000521843.2,ENST00000285900.5,ENST00000518783.1	chr5	153149727:153149975:153174180:153174295:153181915:153182050,	153174181	153174295	153174225	153174225	Frame_Shift_Del	T	-	p.L773fs
LIHC	TCGA-DD-A3A0-01	GRIA1	ENST00000448073.4,ENST00000340592.5	chr5	153149727:153149975:153175035:153175150:153181915:153182050,	153175036	153175150	153175118	153175118	Frame_Shift_Del	G	-	p.G785fs
LIHC	TCGA-DD-A3A0-01	FAM114A2	ENST00000520667.1,ENST00000351797.4,ENST00000520313.1,ENST00000522858.1	chr5	153382406:153382529:153390800:153390880:153405958:153406082,	153390801	153390880	153390810	153390810	Frame_Shift_Del	T	-	p.K328fs
LIHC	TCGA-DD-A3A0-01	CNOT8	ENST00000517568.1,ENST00000403027.2,ENST00000520472.1,ENST00000517876.1,ENST00000285896.6,ENST00000519211.1	chr5	154238211:154238328:154244751:154244945:154251289:154251341,154238211:154238328:154244751:154244945:154250220:154250264,154242771:154242955:154244751:154244945:154251289:154251341,154242771:154242955:154244751:154244945:154250220:154250264,	154244752	154244945	154244850	154244850	Frame_Shift_Del	A	-	p.L72fs
LIHC	TCGA-DD-A3A0-01	GEMIN5	ENST00000285873.7	chr5	154284066:154284189:154284922:154285036:154287150:154287378,	154284923	154285036	154284993	154284993	Frame_Shift_Del	A	-	p.F813fs
LIHC	TCGA-DD-A3A0-01	HAVCR1	ENST00000339252.3,ENST00000522693.1,ENST00000523175.1,ENST00000544197.1,ENST00000517644.1,ENST00000425854.1	chr5	156464257:156464372:156469637:156469693:156476048:156476153,	156469638	156469693	156469655	156469655	Frame_Shift_Del	A	-	p.W274fs
LIHC	TCGA-DD-A3A0-01	ADAM19	ENST00000257527.4,ENST00000517374.1,ENST00000517905.1,ENST00000517951.1,ENST00000430702.2,ENST00000394020.1	chr5	156918622:156918731:156918842:156918920:156919980:156920185,	156918843	156918920	156918878	156918878	Frame_Shift_Del	T	-	p.T651fs
LIHC	TCGA-DD-A3A0-01	EBF1	ENST00000519739.1,ENST00000313708.6,ENST00000519890.1,ENST00000522192.1,ENST00000518836.1,ENST00000380654.4	chr5	158134986:158135181:158139161:158139341:158139977:158140155,	158139162	158139341	158139169	158139169	Frame_Shift_Del	G	-	p.P514fs
LIHC	TCGA-DD-A3A0-01	RNF145	ENST00000519985.1	chr5	158584831:158585434:158585847:158586043:158588273:158588368,	158585848	158586043	158585855	158585855	Frame_Shift_Del	A	-	p.F605fs
LIHC	TCGA-DD-A3A0-01	RNF145	ENST00000519985.1	chr5	158584831:158585434:158585847:158586043:158588273:158588368,	158585848	158586043	158585923	158585923	Frame_Shift_Del	G	-	p.Q583fs
LIHC	TCGA-DD-A3A0-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000424310.2	chr5	158596686:158596827:158600990:158601166:158603639:158603875,	158600991	158601166	158600999	158600999	Frame_Shift_Del	A	-	p.F263fs
LIHC	TCGA-DD-A3A0-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000520548.1,ENST00000424310.2	chr5	158608967:158609059:158621723:158621832:158630441:158630664,	158621724	158621832	158621763	158621763	Frame_Shift_Del	A	-	p.L85fs
LIHC	TCGA-DD-A3A0-01	TTC1	ENST00000231238.5	chr5	159436119:159436200:159437506:159437865:159462146:159462207,	159437507	159437865	159437644	159437644	Frame_Shift_Del	A	-	p.K37fs
LIHC	TCGA-DD-A3A0-01	CCNJL	ENST00000541762.1,ENST00000257536.7,ENST00000519673.1	chr5	159682555:159682715:159686475:159686778:159707531:159707745,	159686476	159686778	159686536	159686536	Frame_Shift_Del	G	-	p.R223fs
LIHC	TCGA-DD-A3A0-01	ATP10B	ENST00000521033.1,ENST00000326831.3,ENST00000517802.1,ENST00000327245.5	chr5	160071144:160071251:160076177:160076263:160097469:160097674,	160076178	160076263	160076238	160076238	Frame_Shift_Del	A	-	p.F234fs
LIHC	TCGA-DD-A3A0-01	HMMR	ENST00000393915.4	chr5	162891728:162891808:162894706:162894754:162896646:162896835,	162894707	162894754	162894717	162894717	Frame_Shift_Del	A	-	p.Q79fs
LIHC	TCGA-DD-A3A0-01	HMMR	ENST00000358715.3	chr5	162891728:162891808:162894709:162894754:162896646:162896835,	162894710	162894754	162894717	162894717	Frame_Shift_Del	A	-	p.Q79fs
LIHC	TCGA-DD-A3A0-01	MAT2B	ENST00000518095.1,ENST00000321757.6	chr5	162932589:162932755:162939007:162939202:162940560:162940675,	162939008	162939202	162939056	162939056	Frame_Shift_Del	G	-	p.G38fs
LIHC	TCGA-DD-A3A0-01	TENM2	ENST00000520393.1	chr5	167248208:167248291:167302990:167303200:167379592:167379660,167182007:167182197:167302990:167303200:167379592:167379660,167000978:167001031:167302990:167303200:167379592:167379660,	167302991	167303200	167303176	167303176	Frame_Shift_Del	G	-	p.G109fs
LIHC	TCGA-DD-A3A0-01	TENM2	ENST00000403607.2	chr5	167551854:167552055:167553758:167553944:167589615:167589762,	167553759	167553944	167553862	167553862	Frame_Shift_Del	C	-	p.H650fs
LIHC	TCGA-DD-A3A0-01	TENM2	ENST00000518659.1,ENST00000519204.1,ENST00000520394.1	chr5	167551854:167552055:167553758:167553971:167589615:167589762,	167553759	167553971	167553862	167553862	Frame_Shift_Del	C	-	p.H650fs
LIHC	TCGA-DD-A3A0-01	WWC1	ENST00000521089.1,ENST00000265293.4,ENST00000519859.1,ENST00000523043.1,ENST00000393895.3	chr5	167798428:167798538:167812215:167812419:167824728:167824791,	167812216	167812419	167812315	167812315	Frame_Shift_Del	A	-	p.Q110fs
LIHC	TCGA-DD-A3A0-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000522140.1,ENST00000265293.4,ENST00000393895.3,ENST00000524038.1	chr5	167871498:167871590:167880972:167881105:167882360:167882525,	167880973	167881105	167881056	167881056	Frame_Shift_Del	T	-	p.V870fs
LIHC	TCGA-DD-A3A0-01	RARS	ENST00000231572.3,ENST00000520013.1,ENST00000538719.1	chr5	167933726:167933836:167937585:167937691:167943782:167943955,	167937586	167937691	167937649	167937649	Frame_Shift_Del	A	-	p.L470fs
LIHC	TCGA-DD-A3A0-01	SLIT3	ENST00000332966.8,ENST00000519560.1	chr5	168093229:168093694:168096787:168096996:168098202:168098488,	168096788	168096996	168096810	168096810	Frame_Shift_Del	A	-	p.F1438fs
LIHC	TCGA-DD-A3A0-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168098202:168098488:168100181:168100336:168110970:168111101,	168100182	168100336	168100194	168100194	Frame_Shift_Del	G	-	p.L1277fs
LIHC	TCGA-DD-A3A0-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168098202:168098488:168100181:168100336:168110970:168111101,	168100182	168100336	168100234	168100234	Frame_Shift_Del	C	-	p.G1263fs
LIHC	TCGA-DD-A3A0-01	LCP2	ENST00000046794.5,ENST00000521416.1	chr5	169689970:169689996:169693811:169693895:169694012:169694079,	169693812	169693895	169693820	169693820	Frame_Shift_Del	A	-	p.F255fs
LIHC	TCGA-DD-A3A0-01	LCP2	ENST00000046794.5,ENST00000519594.1	chr5	169697722:169697921:169701304:169701342:169702323:169702355,	169701305	169701342	169701308	169701308	Frame_Shift_Del	G	-	p.S107fs
LIHC	TCGA-DD-A3A0-01	LCP2	ENST00000046794.5,ENST00000519594.1	chr5	169697722:169697921:169701304:169701342:169702323:169702355,	169701305	169701342	169701318	169701318	Frame_Shift_Del	C	-	p.G104fs
LIHC	TCGA-DD-A3A0-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170341170:170341244:170343468:170343588:170345716:170345863,	170343469	170343588	170343564	170343564	Frame_Shift_Del	A	-	p.V310fs
LIHC	TCGA-DD-A3A0-01	RANBP17	ENST00000521759.1,ENST00000523665.1	chr5	170597133:170597207:170610325:170610434:170626673:170626777,	170610326	170610434	170610377	170610377	Frame_Shift_Del	T	-	p.F661fs
LIHC	TCGA-DD-A3A0-01	FBXW11	ENST00000296933.6,ENST00000523843.1,ENST00000393802.2,ENST00000265094.5,ENST00000522891.1,ENST00000425623.2	chr5	171305014:171305133:171318470:171318608:171326007:171326098,	171318471	171318608	171318503	171318503	Frame_Shift_Del	T	-	p.I241fs
LIHC	TCGA-DD-A3A0-01	DUSP1	ENST00000239223.3	chr5	172195996:172196135:172196577:172196797:172197163:172197309,	172196578	172196797	172196669	172196669	Frame_Shift_Del	A	-	p.F214fs
LIHC	TCGA-DD-A3A0-01	ERGIC1	ENST00000519796.1	chr5	172336669:172336764:172341567:172341841:172351007:172351064,	172341568	172341841	172341800	172341800	Frame_Shift_Del	G	-	p.G67fs
LIHC	TCGA-DD-A3A0-01	ERGIC1	ENST00000518247.1,ENST00000519567.1,ENST00000393784.3	chr5	172336669:172336764:172341716:172341841:172351007:172351064,	172341717	172341841	172341800	172341800	Frame_Shift_Del	G	-	p.G67fs
LIHC	TCGA-DD-A3A0-01	ERGIC1	ENST00000519796.1,ENST00000519567.1,ENST00000393784.3	chr5	172341716:172341841:172351007:172351112:172353511:172353566,	172351008	172351112	172351010	172351010	Frame_Shift_Del	C	-	p.V126fs
LIHC	TCGA-DD-A3A0-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172513503:172513629:172517317:172518404:172535626:172535821,	172517318	172518404	172517518	172517518	Frame_Shift_Del	A	-	p.T112fs
LIHC	TCGA-DD-A3A0-01	BNIP1	ENST00000231668.9,ENST00000351486.5	chr5	172581324:172581416:172585746:172585848:172586935:172587054,	172585747	172585848	172585784	172585784	Frame_Shift_Del	A	-	p.K146fs
LIHC	TCGA-DD-A3A0-01	THOC3	ENST00000265097.4,ENST00000511062.1,ENST00000514250.1,ENST00000510300.1,ENST00000513482.1	chr5	175388422:175388437:175391953:175392158:175394113:175394270,	175391954	175392158	175392156	175392156	Frame_Shift_Del	C	-	p.E143fs
LIHC	TCGA-DD-A3A0-01	CLTB	ENST00000345807.2,ENST00000508425.1	chr5	175824944:175825048:175837257:175837304:175843177:175843262,	175837258	175837304	175837285	175837285	Frame_Shift_Del	C	-	p.G69fs
LIHC	TCGA-DD-A3A0-01	FAF2	ENST00000261942.6	chr5	175915951:175916028:175919194:175919333:175920999:175921085,	175919195	175919333	175919286	175919286	Frame_Shift_Del	A	-	p.K146fs
LIHC	TCGA-DD-A3A0-01	TSPAN17	ENST00000504168.1,ENST00000514705.1,ENST00000515708.1,ENST00000508164.1,ENST00000507471.1,ENST00000503030.1	chr5	176083078:176083126:176083700:176083817:176083895:176083925,	176083701	176083817	176083807	176083807	Frame_Shift_Del	C	-	p.A138fs
LIHC	TCGA-DD-A3A0-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176304894:176305128:176305244:176305394:176305475:176305640,	176305245	176305394	176305271	176305271	Frame_Shift_Del	G	-	p.L632fs
LIHC	TCGA-DD-A3A0-01	HK3	ENST00000292432.5,ENST00000506834.1	chr5	176308944:176309128:176310770:176310870:176311039:176311135,	176310771	176310870	176310826	176310826	Frame_Shift_Del	C	-	p.G666fs
LIHC	TCGA-DD-A3A0-01	HK3	ENST00000292432.5	chr5	176314451:176314747:176315332:176315566:176315709:176315865,	176315333	176315566	176315419	176315419	Frame_Shift_Del	A	-	p.V406fs
LIHC	TCGA-DD-A3A0-01	UIMC1	ENST00000506128.1	chr5	176385093:176385155:176396053:176396292:176396601:176396707,	176396054	176396292	176396191	176396191	Frame_Shift_Del	T	-	p.T189fs
LIHC	TCGA-DD-A3A0-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000511320.1	chr5	176385093:176385155:176395555:176396292:176396601:176396707,	176395556	176396292	176396191	176396191	Frame_Shift_Del	T	-	p.T189fs
LIHC	TCGA-DD-A3A0-01	MXD3	ENST00000423571.2,ENST00000439742.2,ENST00000513063.1,ENST00000427908.2	chr5	176737426:176737541:176738379:176738485:176738761:176738858,176737668:176737698:176738379:176738485:176738761:176738871,	176738380	176738485	176738436	176738436	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-DD-A3A0-01	F12	ENST00000253496.3	chr5	176832323:176832434:176832735:176832806:176832962:176833062,	176832736	176832806	176832791	176832791	Frame_Shift_Del	G	-	p.P77fs
LIHC	TCGA-DD-A3A0-01	GRK6	ENST00000506296.1,ENST00000511244.1,ENST00000507633.1,ENST00000393576.3,ENST00000528793.1,ENST00000515666.1,ENST00000355472.5,ENST00000355958.5	chr5	176859233:176859311:176859706:176859807:176860147:176860190,	176859707	176859807	176859730	176859730	Frame_Shift_Del	C	-	p.V121fs
LIHC	TCGA-DD-A3A0-01	DBN1	ENST00000393565.1	chr5	176886098:176886269:176886603:176886741:176887432:176887553,	176886604	176886741	176886669	176886669	Frame_Shift_Del	G	-	p.P344fs
LIHC	TCGA-DD-A3A0-01	DOK3	ENST00000377112.4	chr5	176932051:176932111:176936475:176936658:176937260:176937383,	176936476	176936658	176936579	176936579	Frame_Shift_Del	G	-	p.P44fs
LIHC	TCGA-DD-A3A0-01	FAM193B	ENST00000443375.2,ENST00000524677.1	chr5	176952197:176952206:176958282:176958522:176959443:176959534,	176958283	176958522	176958420	176958420	Frame_Shift_Del	G	-	p.L6fs
LIHC	TCGA-DD-A3A0-01	FAM193B	ENST00000329540.5,ENST00000443375.2,ENST00000506955.1,ENST00000514747.1	chr5	176959443:176959642:176963358:176963746:176964873:176965020,	176963359	176963746	176963520	176963520	Frame_Shift_Del	C	-	p.G192fs
LIHC	TCGA-DD-A3A0-01	HNRNPAB	ENST00000504898.1,ENST00000358344.3	chr5	177634094:177634226:177636330:177636448:177637132:177637273,	177636331	177636448	177636388	177636388	Frame_Shift_Del	G	-	p.G244fs
LIHC	TCGA-DD-A3A0-01	HNRNPAB	ENST00000506339.1	chr5	177634094:177634226:177636330:177636433:177637132:177637273,	177636331	177636433	177636388	177636388	Frame_Shift_Del	G	-	p.G244fs
LIHC	TCGA-DD-A3A0-01	PHYKPL	ENST00000510991.1	chr5	177638890:177638971:177641796:177641886:177656940:177657050,	177641797	177641886	177641877	177641877	Frame_Shift_Del	C	-	p.G364fs
LIHC	TCGA-DD-A3A0-01	PHYKPL	ENST00000493197.1,ENST00000506045.1,ENST00000393488.2,ENST00000481436.1,ENST00000476487.1,ENST00000308158.5,ENST00000474052.1,ENST00000489262.1	chr5	177641804:177641886:177642276:177642431:177649355:177649477,	177642277	177642431	177642305	177642305	Frame_Shift_Del	T	-	p.I352fs
LIHC	TCGA-DD-A3A0-01	PHYKPL	ENST00000493197.1,ENST00000506045.1,ENST00000393488.2,ENST00000481436.1,ENST00000476487.1,ENST00000308158.5,ENST00000474052.1,ENST00000489262.1	chr5	177641804:177641886:177642276:177642431:177649355:177649477,	177642277	177642431	177642315	177642315	Frame_Shift_Del	C	-	p.G348fs
LIHC	TCGA-DD-A3A0-01	PHYKPL	ENST00000493197.1,ENST00000489262.1	chr5	177656940:177657100:177658405:177658524:177659492:177659542,177656940:177657100:177658405:177658524:177658669:177658830,	177658406	177658524	177658442	177658442	Frame_Shift_Del	C	-	p.A48fs
LIHC	TCGA-DD-A3A0-01	COL23A1	ENST00000390654.3	chr5	177674526:177674553:177674775:177674832:177675192:177675255,	177674776	177674832	177674786	177674786	Frame_Shift_Del	G	-	p.P420fs
LIHC	TCGA-DD-A3A0-01	ZNF354A	ENST00000335815.2,ENST00000520331.1	chr5	178152376:178152472:178153999:178154126:178155990:178156074,	178154000	178154126	178154091	178154091	Frame_Shift_Del	A	-	p.F23fs
LIHC	TCGA-DD-A3A0-01	RUFY1	ENST00000377001.2,ENST00000502984.1,ENST00000393438.2,ENST00000437570.2,ENST00000319449.4,ENST00000393448.2	chr5	178987025:178987199:178989547:178989665:178994461:178994563,	178989548	178989665	178989663	178989663	Frame_Shift_Del	A	-	p.L200fs
LIHC	TCGA-DD-A3A0-01	RUFY1	ENST00000377001.2,ENST00000393438.2,ENST00000502531.1,ENST00000437570.2,ENST00000319449.4,ENST00000502434.1	chr5	179025692:179025822:179028892:179028987:179032876:179032925,	179028893	179028987	179028970	179028970	Frame_Shift_Del	G	-	p.M613fs
LIHC	TCGA-DD-A3A0-01	HNRNPH1	ENST00000519958.1	chr5	179045045:179045061:179045145:179045324:179047892:179047960,179044817:179044912:179045145:179045324:179047892:179047960,	179045146	179045324	179045218	179045218	Frame_Shift_Del	C	-	p.A215fs
LIHC	TCGA-DD-A3A0-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000502673.1,ENST00000512607.2,ENST00000452673.2	chr5	179135978:179136060:179136873:179137066:179143105:179143202,	179136874	179137066	179136928	179136928	Frame_Shift_Del	G	-	p.G195fs
LIHC	TCGA-DD-A3A0-01	CANX	ENST00000503126.1	chr5	179135978:179136060:179136919:179137066:179143105:179143202,	179136920	179137066	179136928	179136928	Frame_Shift_Del	G	-	p.G195fs
LIHC	TCGA-DD-A3A0-01	SQSTM1	ENST00000514093.1,ENST00000376929.3	chr5	179238614:179238682:179249957:179250053:179250857:179250939,	179249958	179250053	179250007	179250007	Frame_Shift_Del	G	-	p.M85fs
LIHC	TCGA-DD-A3A0-01	TBC1D9B	ENST00000444477.2,ENST00000519746.1,ENST00000521469.1,ENST00000355235.3	chr5	179292837:179292888:179294777:179294849:179296768:179296834,	179294778	179294849	179294808	179294808	Frame_Shift_Del	G	-	p.H945fs
LIHC	TCGA-DD-A3A0-01	TBC1D9B	ENST00000356834.3,ENST00000355235.3	chr5	179306627:179306789:179315102:179315312:179318378:179318586,	179315103	179315312	179315264	179315264	Frame_Shift_Del	G	-	p.L365fs
LIHC	TCGA-DD-A3A0-01	RASGEF1C	ENST00000520209.1,ENST00000361132.4,ENST00000393371.2,ENST00000522500.1,ENST00000519456.1	chr5	179529070:179529143:179538456:179538580:179541445:179541541,	179538457	179538580	179538574	179538574	Frame_Shift_Del	G	-	p.L396fs
LIHC	TCGA-DD-A3A0-01	MAPK9	ENST00000347470.4,ENST00000455781.1,ENST00000343111.6,ENST00000393360.3,ENST00000425491.2	chr5	179696279:179696409:179707439:179707608:179713974:179714067,179696279:179696409:179707439:179707608:179718847:179718967,	179707440	179707608	179707456	179707456	Frame_Shift_Del	C	-	p.A36fs
LIHC	TCGA-DD-A3A0-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374580	180374580	Frame_Shift_Del	T	-	p.F249fs
LIHC	TCGA-DD-A3A0-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374580	180374580	Frame_Shift_Del	T	-	p.F249fs
LIHC	TCGA-DD-A3A0-01	IRF4	ENST00000493114.1,ENST00000380956.4	chr6	397110:397252:398827:398935:401423:401777,	398828	398935	398861	398861	Frame_Shift_Del	C	-	p.A224fs
LIHC	TCGA-DD-A3A0-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	532468:532610:549174:549291:553853:553920,	549175	549291	549194	549194	Frame_Shift_Del	C	-	p.G740fs
LIHC	TCGA-DD-A3A0-01	RIPK1	ENST00000259808.4	chr6	3068657:3068895:3076997:3077221:3078012:3078169,	3076998	3077221	3077190	3077190	Frame_Shift_Del	A	-	p.K45fs
LIHC	TCGA-DD-A3A0-01	RIPK1	ENST00000380409.2,ENST00000259808.4,ENST00000479389.1,ENST00000541791.1	chr6	3083318:3083547:3085492:3085642:3089814:3089891,	3085493	3085642	3085551	3085551	Frame_Shift_Del	G	-	p.V249fs
LIHC	TCGA-DD-A3A0-01	RIPK1	ENST00000380409.2,ENST00000259808.4,ENST00000479389.1,ENST00000541791.1	chr6	3085492:3085642:3089814:3089891:3104458:3104549,	3089815	3089891	3089843	3089843	Frame_Shift_Del	T	-	p.Y289fs
LIHC	TCGA-DD-A3A0-01	BPHL	ENST00000434640.1,ENST00000488487.2,ENST00000380368.2,ENST00000424847.2,ENST00000380379.5,ENST00000380375.3,ENST00000490918.1,ENST00000430655.2,ENST00000433912.1	chr6	3127475:3127642:3129278:3129432:3137595:3137656,	3129279	3129432	3129321	3129321	Frame_Shift_Del	G	-	p.G125fs
LIHC	TCGA-DD-A3A0-01	C6orf201	ENST00000333388.5,ENST00000380175.4	chr6	4099233:4099432:4122182:4122280:4130375:4130595,	4122183	4122280	4122194	4122194	Frame_Shift_Del	A	-	p.Q99fs
LIHC	TCGA-DD-A3A0-01	ECI2	ENST00000465828.1,ENST00000495548.1,ENST00000464583.1,ENST00000478266.2,ENST00000413766.2,ENST00000361538.2,ENST00000380125.2,ENST00000380118.3,ENST00000464057.1	chr6	4128047:4128065:4130605:4130794:4131000:4131099,	4130606	4130794	4130628	4130628	Frame_Shift_Del	T	-	p.K131fs
LIHC	TCGA-DD-A3A0-01	ECI2	ENST00000380120.2	chr6	4128047:4128065:4130605:4130876:4131000:4131099,	4130606	4130876	4130628	4130628	Frame_Shift_Del	T	-	p.K131fs
LIHC	TCGA-DD-A3A0-01	CDYL	ENST00000472453.1,ENST00000328908.5,ENST00000449732.2,ENST00000343762.5,ENST00000397588.3	chr6	4943779:4943990:4952499:4952643:4954131:4954490,	4952500	4952643	4952617	4952617	Frame_Shift_Del	A	-	p.K538fs
LIHC	TCGA-DD-A3A0-01	F13A1	ENST00000264870.3	chr6	6144317:6146005:6152045:6152182:6167690:6167851,	6152046	6152182	6152110	6152110	Frame_Shift_Del	G	-	p.L661fs
LIHC	TCGA-DD-A3A0-01	F13A1	ENST00000264870.3	chr6	6248544:6248652:6251043:6251162:6266790:6267042,	6251044	6251162	6251091	6251091	Frame_Shift_Del	A	-	p.Y215fs
LIHC	TCGA-DD-A3A0-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229664	7229664	Frame_Shift_Del	G	-	p.K444fs
LIHC	TCGA-DD-A3A0-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7231981	7231981	Frame_Shift_Del	G	-	p.G1217fs
LIHC	TCGA-DD-A3A0-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7232086	7232086	Frame_Shift_Del	C	-	p.P1252fs
LIHC	TCGA-DD-A3A0-01	RREB1	ENST00000334984.6	chr6	7229229:7232140:7240670:7240835:7246656:7247454,7229229:7232140:7240670:7240835:7248743:7249457,	7240671	7240835	7240709	7240709	Frame_Shift_Del	T	-	p.F1283fs
LIHC	TCGA-DD-A3A0-01	SLC35B3	ENST00000339306.5	chr6	8417634:8417727:8419812:8419910:8420953:8421040,8419046:8419118:8419812:8419910:8420953:8421061,	8419813	8419910	8419862	8419862	Frame_Shift_Del	T	-	p.N244fs
LIHC	TCGA-DD-A3A0-01	GCNT2	ENST00000495262.1	chr6	10527706:10527893:10528863:10530069:10621583:10621655,	10528864	10530069	10529314	10529314	Frame_Shift_Del	T	-	p.V57fs
LIHC	TCGA-DD-A3A0-01	TMEM14B	ENST00000379542.5,ENST00000467317.1,ENST00000491103.1,ENST00000475942.1	chr6	10749854:10749931:10751365:10751467:10770309:10770437,10749854:10749931:10751365:10751467:10755374:10755465,	10751366	10751467	10751453	10751453	Frame_Shift_Del	T	-	p.V63fs
LIHC	TCGA-DD-A3A0-01	MAK	ENST00000313243.2,ENST00000354489.2,ENST00000474039.1	chr6	10784656:10784805:10791907:10792080:10796230:10796542,	10791908	10792080	10791969	10791969	Frame_Shift_Del	G	-	p.H419fs
LIHC	TCGA-DD-A3A0-01	MAK	ENST00000536370.1,ENST00000474039.1	chr6	10819118:10819173:10830780:10831110:10838735:10838752,	10830781	10831110	10830800	10830800	Frame_Shift_Del	C	-	p.E28fs
LIHC	TCGA-DD-A3A0-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120736	12120736	Frame_Shift_Del	A	-	p.L236fs
LIHC	TCGA-DD-A3A0-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125331	12125331	Frame_Shift_Del	A	-	p.E1768fs
LIHC	TCGA-DD-A3A0-01	PHACTR1	ENST00000457702.2,ENST00000415087.1,ENST00000332995.7,ENST00000379350.1	chr6	13206046:13206368:13228047:13228295:13230268:13230425,	13228048	13228295	13228109	13228109	Frame_Shift_Del	G	-	p.G350fs
LIHC	TCGA-DD-A3A0-01	SIRT5	ENST00000359782.3,ENST00000379262.4,ENST00000606117.1	chr6	13584307:13584457:13588562:13588696:13591900:13592126,	13588563	13588696	13588583	13588583	Frame_Shift_Del	T	-	p.F47fs
LIHC	TCGA-DD-A3A0-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15452236:15452406:15468772:15468949:15487537:15487773,	15468773	15468949	15468918	15468918	Frame_Shift_Del	A	-	p.G213fs
LIHC	TCGA-DD-A3A0-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496585	15496585	Frame_Shift_Del	G	-	p.G377fs
LIHC	TCGA-DD-A3A0-01	DTNBP1	ENST00000515875.1	chr6	15637974:15638035:15652317:15652371:15663044:15663151,	15652318	15652371	15652335	15652335	Frame_Shift_Del	T	-	p.K31fs
LIHC	TCGA-DD-A3A0-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327251	16327251	Frame_Shift_Del	G	-	p.H431fs
LIHC	TCGA-DD-A3A0-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16328290	16328290	Frame_Shift_Del	C	-	p.G84fs
LIHC	TCGA-DD-A3A0-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17616757:17616926:17624791:17625064:17626038:17626395,	17624792	17625064	17624851	17624851	Frame_Shift_Del	G	-	p.P1372fs
LIHC	TCGA-DD-A3A0-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17646297:17646385:17648037:17648136:17649393:17649531,	17648038	17648136	17648088	17648088	Frame_Shift_Del	A	-	p.S529fs
LIHC	TCGA-DD-A3A0-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17808998:17809161:17817250:17817464:17825998:17826165,	17817251	17817464	17817413	17817413	Frame_Shift_Del	T	-	p.K613fs
LIHC	TCGA-DD-A3A0-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17831331:17831466:17834191:17834302:17837108:17837321,	17834192	17834302	17834246	17834246	Frame_Shift_Del	T	-	p.K404fs
LIHC	TCGA-DD-A3A0-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18249934	18249934	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-DD-A3A0-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18250027	18250027	Frame_Shift_Del	T	-	p.K206fs
LIHC	TCGA-DD-A3A0-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000503715.1,ENST00000244776.7	chr6	18255966:18256082:18256591:18256686:18258183:18258262,	18256592	18256686	18256633	18256633	Frame_Shift_Del	T	-	p.K137fs
LIHC	TCGA-DD-A3A0-01	E2F3	ENST00000535432.1,ENST00000346618.3	chr6	20486919:20487034:20488343:20488479:20490398:20493789,	20488344	20488479	20488452	20488452	Frame_Shift_Del	G	-	p.G370fs
LIHC	TCGA-DD-A3A0-01	DCDC2	ENST00000378454.3	chr6	24178557:24178860:24205229:24205330:24278276:24278439,	24205230	24205330	24205283	24205283	Frame_Shift_Del	C	-	p.A325fs
LIHC	TCGA-DD-A3A0-01	GPLD1	ENST00000474784.1,ENST00000230036.1	chr6	24467394:24467502:24472809:24472864:24473846:24473895,	24472810	24472864	24472842	24472842	Frame_Shift_Del	A	-	p.F171fs
LIHC	TCGA-DD-A3A0-01	KIAA0319	ENST00000543707.1,ENST00000378214.3,ENST00000430948.2,ENST00000535378.1	chr6	24547255:24547571:24551661:24551753:24554768:24554859,	24551662	24551753	24551725	24551725	Frame_Shift_Del	T	-	p.T984fs
LIHC	TCGA-DD-A3A0-01	SLC17A4	ENST00000377905.4	chr6	25769212:25769418:25770294:25770528:25770611:25770699,	25770295	25770528	25770327	25770327	Frame_Shift_Del	G	-	p.Q110fs
LIHC	TCGA-DD-A3A0-01	SLC17A4	ENST00000377905.4	chr6	25770472:25770528:25770611:25770699:25771153:25771240,	25770612	25770699	25770657	25770657	Frame_Shift_Del	C	-	p.P194fs
LIHC	TCGA-DD-A3A0-01	SLC17A4	ENST00000397076.2	chr6	25769212:25769418:25773740:25773902:25776822:25776955,	25773741	25773902	25773835	25773835	Frame_Shift_Del	T	-	p.L307fs
LIHC	TCGA-DD-A3A0-01	SLC17A1	ENST00000377886.2,ENST00000427328.1,ENST00000244527.4	chr6	25783353:25783446:25799010:25799147:25801117:25801208,	25799011	25799147	25799139	25799139	Frame_Shift_Del	T	-	p.E426fs
LIHC	TCGA-DD-A3A0-01	SLC17A1	ENST00000476801.1,ENST00000244527.4	chr6	25811865:25811998:25813058:25813220:25813322:25813441,	25813059	25813220	25813160	25813160	Frame_Shift_Del	C	-	p.A266fs
LIHC	TCGA-DD-A3A0-01	SLC17A3	ENST00000397060.4,ENST00000361703.6,ENST00000360657.3	chr6	25850275:25850405:25850686:25850848:25850986:25851105,	25850687	25850848	25850778	25850778	Frame_Shift_Del	A	-	p.L301fs
LIHC	TCGA-DD-A3A0-01	SLC17A3	ENST00000509714.1,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25855371:25855458:25861851:25861939:25862460:25862672,	25861852	25861939	25861896	25861896	Frame_Shift_Del	C	-	p.G194fs
LIHC	TCGA-DD-A3A0-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26092989	26092989	Frame_Shift_Del	C	-	p.Y231fs
LIHC	TCGA-DD-A3A0-01	BTN2A2	ENST00000483410.1,ENST00000352867.2,ENST00000467485.1	chr6	26383370:26383409:26388240:26388522:26390232:26390365,26385370:26385590:26388240:26388522:26390232:26390365,26384019:26384143:26388240:26388522:26390232:26390365,	26388241	26388522	26388330	26388330	Frame_Shift_Del	C	-	p.P178fs
LIHC	TCGA-DD-A3A0-01	BTN2A1	ENST00000429381.1,ENST00000312541.5,ENST00000469185.1,ENST00000377600.2,ENST00000541522.1	chr6	26463471:26463753:26465412:26465634:26466180:26466201,	26465413	26465634	26465524	26465524	Frame_Shift_Del	A	-	p.E275fs
LIHC	TCGA-DD-A3A0-01	ZKSCAN4	ENST00000377294.2,ENST00000423974.2	chr6	28212691:28213753:28214746:28214870:28215844:28215927,	28214747	28214870	28214843	28214843	Frame_Shift_Del	G	-	p.L228fs
LIHC	TCGA-DD-A3A0-01	ZKSCAN3	ENST00000252211.2,ENST00000341464.5,ENST00000377255.3	chr6	28331079:28331162:28331468:28331592:28333202:28333541,	28331469	28331592	28331506	28331506	Frame_Shift_Del	C	-	p.T224fs
LIHC	TCGA-DD-A3A0-01	ZSCAN12	ENST00000396827.3,ENST00000361028.1	chr6	28349967:28350386:28358372:28359519:28360678:28360823,	28358373	28359519	28359185	28359185	Frame_Shift_Del	C	-	p.R294fs
LIHC	TCGA-DD-A3A0-01	TRIM27	ENST00000377199.3,ENST00000377194.3	chr6	28875012:28875039:28876584:28876617:28876749:28876766,	28876585	28876617	28876612	28876612	Frame_Shift_Del	T	-	p.M298fs
LIHC	TCGA-DD-A3A0-01	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3,ENST00000498117.1	chr6	28879472:28879495:28887788:28888019:28889668:28889753,	28887789	28888019	28887998	28887998	Frame_Shift_Del	C	-	p.E180fs
LIHC	TCGA-DD-A3A0-01	GABBR1	ENST00000376977.3,ENST00000377034.4,ENST00000494877.1	chr6	29596863:29597024:29598234:29598420:29599172:29599376,29596863:29596884:29598234:29598420:29599172:29599376,	29598235	29598420	29598358	29598358	Frame_Shift_Del	C	-	p.D118fs
LIHC	TCGA-DD-A3A0-01	GABBR1	ENST00000491829.1	chr6	29596863:29596884:29598298:29598420:29599172:29599376,	29598299	29598420	29598358	29598358	Frame_Shift_Del	C	-	p.D118fs
LIHC	TCGA-DD-A3A0-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627217	29627217	Frame_Shift_Del	C	-	p.R70fs
LIHC	TCGA-DD-A3A0-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627217	29627217	Frame_Shift_Del	C	-	p.R70fs
LIHC	TCGA-DD-A3A0-01	HLA-F	ENST00000482257.1	chr6	29691240:29691304:29691546:29691704:29691949:29692008,	29691547	29691704	29691576	29691576	Frame_Shift_Del	G	-	p.R69fs
LIHC	TCGA-DD-A3A0-01	HLA-F	ENST00000334668.4,ENST00000259951.7,ENST00000434407.2,ENST00000414333.1,ENST00000376861.1	chr6	29691240:29691304:29691434:29691704:29691949:29692008,	29691435	29691704	29691576	29691576	Frame_Shift_Del	G	-	p.R69fs
LIHC	TCGA-DD-A3A0-01	PPP1R10	ENST00000376511.2	chr6	30568176:30569435:30569712:30570468:30570622:30570736,	30569713	30570468	30569757	30569757	Frame_Shift_Del	C	-	p.G892fs
LIHC	TCGA-DD-A3A0-01	PPP1R10	ENST00000376511.2	chr6	30568176:30569435:30569712:30570468:30570622:30570736,	30569713	30570468	30569861	30569861	Frame_Shift_Del	C	-	p.G855fs
LIHC	TCGA-DD-A3A0-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610757	30610757	Frame_Shift_Del	G	-	p.G314fs
LIHC	TCGA-DD-A3A0-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30610544:30610788:30613671:30613751:30613843:30613886,	30613672	30613751	30613679	30613679	Frame_Shift_Del	C	-	p.P315fs
LIHC	TCGA-DD-A3A0-01	PPP1R18	ENST00000399199.3	chr6	30646959:30647166:30652184:30653823:30654890:30654935,	30652185	30653823	30653337	30653337	Frame_Shift_Del	C	-	p.R153fs
LIHC	TCGA-DD-A3A0-01	MDC1	ENST00000376406.3	chr6	30675160:30675231:30675342:30676134:30679188:30679281,	30675343	30676134	30675359	30675359	Frame_Shift_Del	G	-	p.P999fs
LIHC	TCGA-DD-A3A0-01	FLOT1	ENST00000456573.2,ENST00000487376.1,ENST00000376389.3	chr6	30697813:30697963:30698204:30698342:30698458:30698504,	30698205	30698342	30698207	30698207	Frame_Shift_Del	G	-	p.Q363fs
LIHC	TCGA-DD-A3A0-01	DDR1	ENST00000376568.3,ENST00000376575.3,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8	chr6	30862364:30862448:30864397:30864642:30864790:30864823,30863180:30863291:30864397:30864642:30864790:30864823,	30864398	30864642	30864562	30864562	Frame_Shift_Del	G	-	p.G597fs
LIHC	TCGA-DD-A3A0-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30863180:30863291:30864507:30864642:30864790:30864823,	30864508	30864642	30864562	30864562	Frame_Shift_Del	G	-	p.G597fs
LIHC	TCGA-DD-A3A0-01	VARS2	ENST00000421263.1	chr6	30882042:30882121:30882586:30882814:30882932:30883014,30882158:30882246:30882586:30882814:30882932:30883014,	30882587	30882814	30882654	30882654	Frame_Shift_Del	G	-	p.W14fs
LIHC	TCGA-DD-A3A0-01	VARS2	ENST00000541562.1	chr6	30882042:30882121:30882581:30882814:30882932:30883014,30882158:30882246:30882581:30882814:30882932:30883014,	30882582	30882814	30882654	30882654	Frame_Shift_Del	G	-	p.W14fs
LIHC	TCGA-DD-A3A0-01	VARS2	ENST00000416670.2,ENST00000542001.1,ENST00000428017.1,ENST00000541562.1,ENST00000321897.5,ENST00000467717.1	chr6	30883928:30884026:30884654:30884736:30884881:30885001,	30884655	30884736	30884721	30884721	Frame_Shift_Del	T	-	p.C246fs
LIHC	TCGA-DD-A3A0-01	VARS2	ENST00000477288.1	chr6	30883928:30884026:30884654:30884761:30884881:30885001,	30884655	30884761	30884721	30884721	Frame_Shift_Del	T	-	p.C246fs
LIHC	TCGA-DD-A3A0-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000542001.1,ENST00000541562.1,ENST00000321897.5	chr6	30884881:30885001:30885471:30885583:30886603:30886692,	30885472	30885583	30885527	30885527	Frame_Shift_Del	C	-	p.T310fs
LIHC	TCGA-DD-A3A0-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000469358.1,ENST00000542001.1,ENST00000476162.1,ENST00000541562.1,ENST00000321897.5	chr6	30888841:30888918:30889006:30889082:30889365:30889468,	30889007	30889082	30889036	30889036	Frame_Shift_Del	G	-	p.W529fs
LIHC	TCGA-DD-A3A0-01	PSORS1C1	ENST00000547221.1,ENST00000259881.9	chr6	31106206:31106236:31106432:31106556:31107417:31107814,	31106433	31106556	31106442	31106442	Frame_Shift_Del	C	-	p.T18fs
LIHC	TCGA-DD-A3A0-01	HLA-C	ENST00000376228.5,ENST00000470363.1,ENST00000383329.3,ENST00000376237.4,ENST00000487245.1	chr6	31236525:31236950:31237114:31237162:31237269:31237302,	31237115	31237162	31237144	31237144	Frame_Shift_Del	C	-	p.G362fs
LIHC	TCGA-DD-A3A0-01	HLA-C	ENST00000376237.4	chr6	31238215:31238262:31238849:31239108:31239375:31239533,	31238850	31239108	31239082	31239082	Frame_Shift_Del	G	-	p.P129fs
LIHC	TCGA-DD-A3A0-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000495835.1,ENST00000415537.1	chr6	31238215:31238262:31238849:31239125:31239375:31239533,	31238850	31239125	31239082	31239082	Frame_Shift_Del	G	-	p.P129fs
LIHC	TCGA-DD-A3A0-01	MICA	ENST00000449934.2	chr6	31378319:31378574:31378848:31379136:31379723:31379839,	31378849	31379136	31379092	31379092	Frame_Shift_Del	A	-	p.E190fs
LIHC	TCGA-DD-A3A0-01	LTA	ENST00000454783.1,ENST00000418386.2	chr6	31540510:31540618:31540704:31540810:31541057:31542101,	31540705	31540810	31540758	31540758	Frame_Shift_Del	C	-	p.H51fs
LIHC	TCGA-DD-A3A0-01	NCR3	ENST00000376071.4	chr6	31557558:31557676:31557751:31557903:31560455:31560526,	31557752	31557903	31557780	31557780	Frame_Shift_Del	A	-	p.F56fs
LIHC	TCGA-DD-A3A0-01	PRRC2A	ENST00000376033.2,ENST00000376007.4,ENST00000487839.1	chr6	31603743:31603826:31603985:31604196:31604286:31604385,	31603986	31604196	31604005	31604005	Frame_Shift_Del	C	-	p.P1883fs
LIHC	TCGA-DD-A3A0-01	BAG6	ENST00000375976.4,ENST00000404765.2,ENST00000437771.1,ENST00000211379.5,ENST00000439687.2,ENST00000435080.1,ENST00000362049.6	chr6	31614170:31614300:31615367:31615603:31616453:31616528,	31615368	31615603	31615386	31615386	Frame_Shift_Del	G	-	p.P257fs
LIHC	TCGA-DD-A3A0-01	BAG6	ENST00000375964.6	chr6	31614170:31614300:31615367:31615621:31616453:31616528,	31615368	31615621	31615386	31615386	Frame_Shift_Del	G	-	p.P257fs
LIHC	TCGA-DD-A3A0-01	VARS	ENST00000375663.3	chr6	31760533:31760672:31760762:31760897:31762607:31762963,	31760763	31760897	31760860	31760860	Frame_Shift_Del	A	-	p.L142fs
LIHC	TCGA-DD-A3A0-01	SLC44A4	ENST00000544672.1,ENST00000414427.1,ENST00000229729.6	chr6	31842236:31842297:31842497:31842623:31842705:31842805,	31842498	31842623	31842535	31842535	Frame_Shift_Del	T	-	p.N68fs
LIHC	TCGA-DD-A3A0-01	C2	ENST00000497706.1	chr6	31901643:31901742:31903699:31903838:31905095:31905236,	31903700	31903838	31903788	31903788	Frame_Shift_Del	C	-	p.S313fs
LIHC	TCGA-DD-A3A0-01	SKIV2L	ENST00000375394.2,ENST00000465703.1,ENST00000474839.1,ENST00000544581.1	chr6	31932008:31932119:31933559:31933790:31934485:31934623,	31933560	31933790	31933718	31933718	Frame_Shift_Del	C	-	p.D710fs
LIHC	TCGA-DD-A3A0-01	STK19	ENST00000478486.1	chr6	31940173:31940288:31940397:31940696:31946679:31946775,	31940398	31940696	31940500	31940500	Frame_Shift_Del	T	-	p.L178fs
LIHC	TCGA-DD-A3A0-01	STK19	ENST00000473983.1,ENST00000375331.2,ENST00000466132.1,ENST00000492583.1,ENST00000375333.2,ENST00000466336.1	chr6	31940173:31940288:31940397:31940534:31946679:31946775,	31940398	31940534	31940500	31940500	Frame_Shift_Del	T	-	p.L178fs
LIHC	TCGA-DD-A3A0-01	STK19	ENST00000473983.1	chr6	31946679:31946775:31947190:31948325:31948430:31948501,	31947191	31948325	31947239	31947239	Frame_Shift_Del	T	-	p.F238fs
LIHC	TCGA-DD-A3A0-01	STK19	ENST00000492583.1,ENST00000375333.2	chr6	31946682:31946775:31947190:31947330:31948227:31948325,31946679:31946787:31947190:31947330:31948227:31948325,	31947191	31947330	31947239	31947239	Frame_Shift_Del	T	-	p.F238fs
LIHC	TCGA-DD-A3A0-01	STK19	ENST00000473983.1	chr6	31946679:31946775:31947190:31948325:31948430:31948501,	31947191	31948325	31947266	31947266	Frame_Shift_Del	G	-	p.G247fs
LIHC	TCGA-DD-A3A0-01	STK19	ENST00000492583.1,ENST00000375333.2	chr6	31946682:31946775:31947190:31947330:31948227:31948325,31946679:31946787:31947190:31947330:31948227:31948325,	31947191	31947330	31947266	31947266	Frame_Shift_Del	G	-	p.G247fs
LIHC	TCGA-DD-A3A0-01	CYP21A2	ENST00000435122.2,ENST00000466879.1,ENST00000479074.1,ENST00000464325.1,ENST00000486063.1,ENST00000483041.1,ENST00000418967.2,ENST00000466779.1	chr6	32007132:32007234:32007322:32007424:32007525:32007533,	32007323	32007424	32007416	32007416	Frame_Shift_Del	T	-	p.F215fs
LIHC	TCGA-DD-A3A0-01	CYP21A2	ENST00000479730.1	chr6	32007132:32007234:32007361:32007424:32007525:32007533,	32007362	32007424	32007416	32007416	Frame_Shift_Del	T	-	p.F215fs
LIHC	TCGA-DD-A3A0-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32015510:32015789:32016139:32016427:32017046:32017364,	32016140	32016427	32016275	32016275	Frame_Shift_Del	G	-	p.Q3304fs
LIHC	TCGA-DD-A3A0-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32023627:32023951:32024362:32024680:32025834:32026167,	32024363	32024680	32024628	32024628	Frame_Shift_Del	G	-	p.P2626fs
LIHC	TCGA-DD-A3A0-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32037329:32037638:32037903:32038191:32039766:32040075,	32037904	32038191	32037960	32037960	Frame_Shift_Del	A	-	p.L1741fs
LIHC	TCGA-DD-A3A0-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32037329:32037638:32037903:32038191:32039766:32040075,	32037904	32038191	32038039	32038039	Frame_Shift_Del	G	-	p.Q1715fs
LIHC	TCGA-DD-A3A0-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32037329:32037638:32037903:32038191:32039766:32040075,	32037904	32038191	32038138	32038138	Frame_Shift_Del	C	-	p.V1682fs
LIHC	TCGA-DD-A3A0-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32037903:32038191:32039766:32040075:32041423:32041729,	32039767	32040075	32039816	32039816	Frame_Shift_Del	C	-	p.G1647fs
LIHC	TCGA-DD-A3A0-01	ATF6B	ENST00000495579.1,ENST00000375203.3,ENST00000485314.1,ENST00000375201.4	chr6	32089039:32089125:32093893:32094029:32094879:32094971,	32093894	32094029	32093940	32093940	Frame_Shift_Del	A	-	p.F141fs
LIHC	TCGA-DD-A3A0-01	GPSM3	ENST00000375040.3,ENST00000375043.3	chr6	32159485:32159647:32159924:32160027:32160248:32160293,32159485:32159685:32159924:32160027:32160248:32160293,	32159925	32160027	32160020	32160020	Frame_Shift_Del	G	-	p.P17fs
LIHC	TCGA-DD-A3A0-01	NOTCH4	ENST00000375023.3,ENST00000474612.1	chr6	32163398:32163927:32164100:32164198:32164701:32164754,	32164101	32164198	32164112	32164112	Frame_Shift_Del	G	-	p.Q1763fs
LIHC	TCGA-DD-A3A0-01	HLA-DRB5	ENST00000374975.3	chr6	32486332:32486443:32487146:32487428:32489681:32489839,	32487147	32487428	32487268	32487268	Frame_Shift_Del	A	-	p.I177fs
LIHC	TCGA-DD-A3A0-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549475	32549475	Frame_Shift_Del	T	-	p.M171fs
LIHC	TCGA-DD-A3A0-01	HLA-DQB1	ENST00000399084.1,ENST00000434651.2,ENST00000374943.4	chr6	32629123:32629234:32629743:32630025:32632574:32632844,	32629744	32630025	32629870	32629870	Frame_Shift_Del	G	-	p.L179fs
LIHC	TCGA-DD-A3A0-01	HLA-DQB2	ENST00000437316.2,ENST00000435145.2	chr6	32725057:32725081:32725549:32725660:32726626:32726745,	32725550	32725660	32725599	32725599	Frame_Shift_Del	C	-	p.G236fs
LIHC	TCGA-DD-A3A0-01	HLA-DOA	ENST00000450833.2	chr6	32974856:32974992:32975087:32975369:32975789:32975831,32974577:32974618:32975087:32975369:32975789:32975831,	32975088	32975369	32975279	32975279	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A3A0-01	HLA-DOA	ENST00000485901.1	chr6	32974577:32974618:32974856:32975369:32975789:32975831,	32974857	32975369	32975279	32975279	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A3A0-01	RXRB	ENST00000374685.4,ENST00000374680.3,ENST00000483281.1,ENST00000544186.1	chr6	33163346:33163479:33163683:33163813:33164210:33164383,	33163684	33163813	33163726	33163726	Frame_Shift_Del	A	-	p.S362fs
LIHC	TCGA-DD-A3A0-01	RXRB	ENST00000374680.3	chr6	33166084:33166241:33166945:33167193:33168018:33168217,	33166946	33167193	33166989	33166989	Frame_Shift_Del	G	-	p.P148fs
LIHC	TCGA-DD-A3A0-01	HSD17B8	ENST00000374662.3,ENST00000469186.1	chr6	33172678:33172896:33172997:33173114:33173223:33173316,	33172998	33173114	33173039	33173039	Frame_Shift_Del	G	-	p.A104fs
LIHC	TCGA-DD-A3A0-01	HSD17B8	ENST00000374662.3,ENST00000469186.1	chr6	33172997:33173114:33173223:33173316:33173416:33173502,	33173224	33173316	33173283	33173283	Frame_Shift_Del	T	-	p.G149fs
LIHC	TCGA-DD-A3A0-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177402:33177563:33177691:33177907:33178934:33178964,	33177692	33177907	33177752	33177752	Frame_Shift_Del	C	-	p.D100fs
LIHC	TCGA-DD-A3A0-01	VPS52	ENST00000464425.1	chr6	33236275:33236426:33236790:33236995:33237266:33237334,	33236791	33236995	33236841	33236841	Frame_Shift_Del	C	-	p.G166fs
LIHC	TCGA-DD-A3A0-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000463486.1,ENST00000478934.1,ENST00000445902.2	chr6	33236275:33236426:33236790:33236966:33237266:33237334,	33236791	33236966	33236841	33236841	Frame_Shift_Del	C	-	p.G166fs
LIHC	TCGA-DD-A3A0-01	SCUBE3	ENST00000394681.1,ENST00000274938.7	chr6	35212426:35212588:35213004:35213202:35213720:35213873,	35213005	35213202	35213108	35213108	Frame_Shift_Del	C	-	p.N835fs
LIHC	TCGA-DD-A3A0-01	PPARD	ENST00000444397.1,ENST00000360694.3	chr6	35314843:35314927:35378763:35378994:35387903:35388058,	35378764	35378994	35378955	35378955	Frame_Shift_Del	G	-	p.G32fs
LIHC	TCGA-DD-A3A0-01	PPARD	ENST00000337400.2,ENST00000311565.4,ENST00000444397.1,ENST00000360694.3	chr6	35378763:35378994:35387903:35388058:35389596:35389735,	35387904	35388058	35388023	35388023	Frame_Shift_Del	T	-	p.F84fs
LIHC	TCGA-DD-A3A0-01	FKBP5	ENST00000539068.1,ENST00000357266.4,ENST00000536438.1,ENST00000542713.1	chr6	35586872:35586987:35587908:35588051:35604790:35604935,	35587909	35588051	35587912	35587912	Frame_Shift_Del	A	-	p.F130fs
LIHC	TCGA-DD-A3A0-01	BRPF3	ENST00000534400.1	chr6	36193047:36193141:36196678:36196833:36198202:36199094,36189944:36190042:36196678:36196833:36198202:36199094,	36196679	36196833	36196705	36196705	Frame_Shift_Del	G	-	p.E1102fs
LIHC	TCGA-DD-A3A0-01	STK38	ENST00000229812.7	chr6	36465556:36465652:36466139:36466263:36467649:36467767,	36466140	36466263	36466143	36466143	Frame_Shift_Del	A	-	p.L358fs
LIHC	TCGA-DD-A3A0-01	STK38	ENST00000229812.7	chr6	36465556:36465652:36466139:36466263:36467649:36467767,	36466140	36466263	36466236	36466236	Frame_Shift_Del	G	-	p.P327fs
LIHC	TCGA-DD-A3A0-01	PPIL1	ENST00000373699.5	chr6	36824361:36824430:36839493:36839648:36842492:36842800,	36839494	36839648	36839616	36839616	Frame_Shift_Del	T	-	p.K30fs
LIHC	TCGA-DD-A3A0-01	C6orf89	ENST00000480824.2,ENST00000355190.3,ENST00000373685.1,ENST00000359359.2	chr6	36867201:36867409:36869996:36870210:36882059:36882211,	36869997	36870210	36870160	36870160	Frame_Shift_Del	A	-	p.E118fs
LIHC	TCGA-DD-A3A0-01	C6orf89	ENST00000510325.2	chr6	36867201:36867409:36870055:36870210:36882059:36882211,	36870056	36870210	36870160	36870160	Frame_Shift_Del	A	-	p.E118fs
LIHC	TCGA-DD-A3A0-01	C6orf89	ENST00000510325.2,ENST00000480824.2,ENST00000355190.3,ENST00000373685.1,ENST00000359359.2	chr6	36882329:36882469:36884220:36884350:36887353:36887477,	36884221	36884350	36884259	36884259	Frame_Shift_Del	T	-	p.L245fs
LIHC	TCGA-DD-A3A0-01	MTCH1	ENST00000538808.1,ENST00000373616.5,ENST00000471737.1,ENST00000460219.1,ENST00000373627.5,ENST00000418541.2	chr6	36937831:36937890:36938181:36938249:36938422:36938470,	36938182	36938249	36938223	36938223	Frame_Shift_Del	G	-	p.P327fs
LIHC	TCGA-DD-A3A0-01	MTCH1	ENST00000373627.5	chr6	36938422:36938470:36940427:36940572:36943433:36943493,	36940428	36940572	36940450	36940450	Frame_Shift_Del	T	-	p.N295fs
LIHC	TCGA-DD-A3A0-01	MTCH1	ENST00000538808.1,ENST00000373616.5,ENST00000460219.1,ENST00000373627.5	chr6	36944974:36945026:36945409:36945467:36945853:36945931,	36945410	36945467	36945416	36945416	Frame_Shift_Del	G	-	p.L215fs
LIHC	TCGA-DD-A3A0-01	PIM1	ENST00000373509.5	chr6	37138974:37139267:37140771:37140948:37141709:37142023,	37140772	37140948	37140913	37140913	Frame_Shift_Del	G	-	p.R250fs
LIHC	TCGA-DD-A3A0-01	MDGA1	ENST00000478143.2,ENST00000505425.1,ENST00000297153.7,ENST00000434837.3	chr6	37619786:37620116:37622049:37622319:37622575:37622708,	37622050	37622319	37622218	37622218	Frame_Shift_Del	G	-	p.Q272fs
LIHC	TCGA-DD-A3A0-01	BTBD9	ENST00000314100.6,ENST00000408958.1,ENST00000419706.2,ENST00000328403.6,ENST00000481247.1,ENST00000403056.1	chr6	38142760:38142958:38160294:38160373:38224184:38224292,	38160295	38160373	38160348	38160348	Frame_Shift_Del	T	-	p.R530fs
LIHC	TCGA-DD-A3A0-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38850685:38850828:38851097:38851232:38851651:38851774,	38851098	38851232	38851130	38851130	Frame_Shift_Del	A	-	p.A2461fs
LIHC	TCGA-DD-A3A0-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38850685:38850828:38851097:38851232:38851651:38851774,	38851098	38851232	38851158	38851158	Frame_Shift_Del	A	-	p.K2472fs
LIHC	TCGA-DD-A3A0-01	KIF6	ENST00000287152.7,ENST00000538893.1,ENST00000373215.3,ENST00000373216.3,ENST00000458470.1	chr6	39563829:39564036:39580964:39581094:39602624:39602734,	39580965	39581094	39581047	39581047	Frame_Shift_Del	T	-	p.N186fs
LIHC	TCGA-DD-A3A0-01	TREML1	ENST00000426005.2	chr6	41119019:41119122:41121495:41121828:41121983:41122070,	41121496	41121828	41121539	41121539	Frame_Shift_Del	C	-	p.G111fs
LIHC	TCGA-DD-A3A0-01	TREML1	ENST00000426005.2	chr6	41119019:41119122:41121495:41121828:41121983:41122070,	41121496	41121828	41121734	41121734	Frame_Shift_Del	T	-	p.K46fs
LIHC	TCGA-DD-A3A0-01	FOXP4	ENST00000373060.1,ENST00000307972.4,ENST00000373057.3	chr6	41557508:41557592:41557700:41557908:41558008:41558085,	41557701	41557908	41557781	41557781	Frame_Shift_Del	C	-	p.H410fs
LIHC	TCGA-DD-A3A0-01	FOXP4	ENST00000409208.1,ENST00000373063.3	chr6	41557508:41557592:41557736:41557908:41558008:41558085,	41557737	41557908	41557781	41557781	Frame_Shift_Del	C	-	p.H410fs
LIHC	TCGA-DD-A3A0-01	MED20	ENST00000409060.1,ENST00000409312.1	chr6	41877082:41877260:41884522:41884677:41888742:41888831,	41884523	41884677	41884670	41884670	Frame_Shift_Del	G	-	p.Q8fs
LIHC	TCGA-DD-A3A0-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236887	42236887	Frame_Shift_Del	G	-	p.Q148fs
LIHC	TCGA-DD-A3A0-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42237186	42237186	Frame_Shift_Del	G	-	p.P48fs
LIHC	TCGA-DD-A3A0-01	UBR2	ENST00000372883.3,ENST00000372899.1,ENST00000372901.1	chr6	42620228:42620383:42623358:42623461:42625761:42625871,	42623359	42623461	42623403	42623403	Frame_Shift_Del	T	-	p.H938fs
LIHC	TCGA-DD-A3A0-01	PEX6	ENST00000304611.8,ENST00000244546.4	chr6	42932527:42932667:42932812:42932890:42932989:42933106,	42932813	42932890	42932865	42932865	Frame_Shift_Del	C	-	p.A872fs
LIHC	TCGA-DD-A3A0-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43014617:43014845:43015885:43015991:43016069:43016307,	43015886	43015991	43015902	43015902	Frame_Shift_Del	G	-	p.P802fs
LIHC	TCGA-DD-A3A0-01	KLC4	ENST00000347162.5,ENST00000463063.1,ENST00000453940.2,ENST00000479388.1,ENST00000394058.1,ENST00000259708.3,ENST00000394056.2	chr6	43039304:43039357:43039589:43039660:43039884:43039981,	43039590	43039660	43039608	43039608	Frame_Shift_Del	G	-	p.G443fs
LIHC	TCGA-DD-A3A0-01	PTK7	ENST00000481946.1	chr6	43099753:43099902:43100158:43100503:43106586:43106720,	43100159	43100503	43100230	43100230	Frame_Shift_Del	C	-	p.P346fs
LIHC	TCGA-DD-A3A0-01	PTK7	ENST00000230418.4,ENST00000352931.2,ENST00000481273.1,ENST00000487673.1,ENST00000230419.4,ENST00000345201.2,ENST00000470019.1	chr6	43099753:43099902:43100158:43100425:43106586:43106720,	43100159	43100425	43100230	43100230	Frame_Shift_Del	C	-	p.P346fs
LIHC	TCGA-DD-A3A0-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43166427:43166593:43167003:43167109:43167666:43167894,	43167004	43167109	43167064	43167064	Frame_Shift_Del	G	-	p.L1037fs
LIHC	TCGA-DD-A3A0-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43170846:43170942:43171154:43171330:43171591:43171725,	43171155	43171330	43171225	43171225	Frame_Shift_Del	G	-	p.R1307fs
LIHC	TCGA-DD-A3A0-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43172485:43172595:43172670:43172853:43173000:43173161,	43172671	43172853	43172710	43172710	Frame_Shift_Del	T	-	p.F1497fs
LIHC	TCGA-DD-A3A0-01	ABCC10	ENST00000463024.1,ENST00000244533.3,ENST00000372530.4	chr6	43412525:43412676:43412862:43413052:43413336:43413680,	43412863	43413052	43412892	43412892	Frame_Shift_Del	C	-	p.A929fs
LIHC	TCGA-DD-A3A0-01	YIPF3	ENST00000511831.1,ENST00000506469.1,ENST00000416380.2,ENST00000503972.1,ENST00000490447.2,ENST00000455768.2,ENST00000502714.1,ENST00000372422.2	chr6	43481333:43481371:43483332:43483439:43483626:43483784,	43483333	43483439	43483406	43483406	Frame_Shift_Del	C	-	p.A108fs
LIHC	TCGA-DD-A3A0-01	YIPF3	ENST00000510102.1	chr6	43481333:43481371:43483343:43483439:43483626:43483784,	43483344	43483439	43483406	43483406	Frame_Shift_Del	C	-	p.A108fs
LIHC	TCGA-DD-A3A0-01	POLR1C	ENST00000481352.2,ENST00000372389.3,ENST00000304004.3	chr6	43488069:43488165:43488362:43488512:43488669:43488786,	43488363	43488512	43488489	43488489	Frame_Shift_Del	T	-	p.V261fs
LIHC	TCGA-DD-A3A0-01	MRPS18A	ENST00000372133.3	chr6	43639520:43639643:43642938:43643008:43643230:43643354,	43642939	43643008	43642949	43642949	Frame_Shift_Del	G	-	p.Q146fs
LIHC	TCGA-DD-A3A0-01	TMEM63B	ENST00000532634.1,ENST00000323267.6	chr6	44095375:44095415:44102297:44102480:44102753:44102833,	44102298	44102480	44102444	44102444	Frame_Shift_Del	C	-	p.V41fs
LIHC	TCGA-DD-A3A0-01	TMEM63B	ENST00000534326.1	chr6	44095375:44095415:44102156:44102480:44102753:44102833,	44102157	44102480	44102444	44102444	Frame_Shift_Del	C	-	p.V41fs
LIHC	TCGA-DD-A3A0-01	TMEM63B	ENST00000371893.2,ENST00000323267.6,ENST00000533121.1,ENST00000259746.9	chr6	44117960:44118047:44118300:44118366:44119582:44119745,	44118301	44118366	44118335	44118335	Frame_Shift_Del	A	-	p.K548fs
LIHC	TCGA-DD-A3A0-01	HSP90AB1	ENST00000353801.3,ENST00000371646.5,ENST00000371554.1	chr6	44217757:44217891:44218027:44218336:44218784:44218950,	44218028	44218336	44218116	44218116	Frame_Shift_Del	A	-	p.E246fs
LIHC	TCGA-DD-A3A0-01	NFKBIE	ENST00000275015.5	chr6	44226949:44227021:44227779:44228019:44228187:44228276,	44227780	44228019	44227797	44227797	Frame_Shift_Del	G	-	p.Q474fs
LIHC	TCGA-DD-A3A0-01	AARS2	ENST00000244571.4	chr6	44270538:44270647:44270802:44270912:44271022:44271160,	44270803	44270912	44270876	44270876	Frame_Shift_Del	C	-	p.V728fs
LIHC	TCGA-DD-A3A0-01	SUPT3H	ENST00000475057.1,ENST00000306867.5,ENST00000371459.1,ENST00000371460.1,ENST00000371461.2	chr6	44971389:44971529:44982537:44982628:44988282:44988363,	44982538	44982628	44982572	44982572	Frame_Shift_Del	A	-	p.I121fs
LIHC	TCGA-DD-A3A0-01	CLIC5	ENST00000339561.6,ENST00000185206.6	chr6	45870802:45870992:45881964:45882146:45909283:45909390,	45881965	45882146	45882018	45882018	Frame_Shift_Del	C	-	p.D338fs
LIHC	TCGA-DD-A3A0-01	SLC25A27	ENST00000411689.2	chr6	46620721:46621035:46623579:46623771:46626698:46626783,	46623580	46623771	46623670	46623670	Frame_Shift_Del	C	-	p.A66fs
LIHC	TCGA-DD-A3A0-01	PLA2G7	ENST00000537365.1	chr6	46684711:46684833:46690519:46690662:46703286:46703430,	46690520	46690662	46690621	46690621	Frame_Shift_Del	G	-	p.P4fs
LIHC	TCGA-DD-A3A0-01	PLA2G7	ENST00000537365.1	chr6	46684711:46684833:46690519:46690662:46703286:46703430,	46690520	46690662	46690625	46690625	Frame_Shift_Del	C	-	p.V2fs
LIHC	TCGA-DD-A3A0-01	CD2AP	ENST00000359314.5,ENST00000479857.1	chr6	47547129:47547225:47548599:47548636:47549738:47549801,	47548600	47548636	47548605	47548605	Frame_Shift_Del	A	-	p.P338fs
LIHC	TCGA-DD-A3A0-01	CD2AP	ENST00000359314.5,ENST00000479857.1	chr6	47547129:47547225:47548599:47548636:47549738:47549801,	47548600	47548636	47548612	47548612	Frame_Shift_Del	C	-	p.P344fs
LIHC	TCGA-DD-A3A0-01	PKHD1	ENST00000371117.3	chr6	51497362:51497521:51503646:51503754:51512828:51512916,	51503647	51503754	51503666	51503666	Frame_Shift_Del	A	-	p.F3829fs
LIHC	TCGA-DD-A3A0-01	PKHD1	ENST00000371117.3	chr6	51513882:51514018:51523749:51524767:51609182:51609340,	51523750	51524767	51523823	51523823	Frame_Shift_Del	C	-	p.V3701fs
LIHC	TCGA-DD-A3A0-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51695658:51695787:51701201:51701267:51712572:51712632,	51701202	51701267	51701213	51701213	Frame_Shift_Del	G	-	p.P2721fs
LIHC	TCGA-DD-A3A0-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51875106:51875257:51882207:51882427:51887598:51887742,	51882208	51882427	51882273	51882273	Frame_Shift_Del	T	-	p.Q1845fs
LIHC	TCGA-DD-A3A0-01	LRRC1	ENST00000370888.1	chr6	53778651:53778767:53784295:53784468:53785422:53785546,	53784296	53784468	53784418	53784418	Frame_Shift_Del	T	-	p.I410fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56468884	56468884	Frame_Shift_Del	T	-	p.K3481fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56468954	56468954	Frame_Shift_Del	T	-	p.N3458fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469414	56469414	Frame_Shift_Del	G	-	p.Q3305fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470038	56470038	Frame_Shift_Del	T	-	p.S3097fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470269	56470269	Frame_Shift_Del	T	-	p.M3020fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470667	56470667	Frame_Shift_Del	A	-	p.V2887fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470849	56470849	Frame_Shift_Del	A	-	p.L2827fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56472073	56472073	Frame_Shift_Del	A	-	p.F2418fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56472115	56472115	Frame_Shift_Del	G	-	p.A2404fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483440	56483440	Frame_Shift_Del	T	-	p.T1798fs
LIHC	TCGA-DD-A3A0-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483920	56483920	Frame_Shift_Del	T	-	p.T1638fs
LIHC	TCGA-DD-A3A0-01	BEND6	ENST00000370746.3	chr6	56857175:56857353:56879930:56880151:56882004:56882197,	56879931	56880151	56879992	56879992	Frame_Shift_Del	G	-	p.K120fs
LIHC	TCGA-DD-A3A0-01	BEND6	ENST00000484701.1,ENST00000370746.3,ENST00000370750.2,ENST00000545789.1	chr6	56879930:56880151:56882004:56882197:56883218:56883269,	56882005	56882197	56882144	56882144	Frame_Shift_Del	G	-	p.R220fs
LIHC	TCGA-DD-A3A0-01	ZNF451	ENST00000491832.2,ENST00000370706.4	chr6	57011887:57013491:57015516:57015660:57017018:57017149,	57015517	57015660	57015603	57015603	Frame_Shift_Del	T	-	p.F900fs
LIHC	TCGA-DD-A3A0-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395072	64395072	Frame_Shift_Del	A	-	p.S483fs
LIHC	TCGA-DD-A3A0-01	PHF3	ENST00000481385.2,ENST00000515594.1,ENST00000509876.1,ENST00000393387.1,ENST00000506783.1,ENST00000262043.3	chr6	64401626:64401933:64404470:64404654:64408112:64408135,	64404471	64404654	64404595	64404595	Frame_Shift_Del	A	-	p.E874fs
LIHC	TCGA-DD-A3A0-01	EYS	ENST00000503581.1,ENST00000398580.3,ENST00000370616.2,ENST00000370621.3	chr6	64472353:64472526:64487898:64488073:64497997:64498142,	64487899	64488073	64487998	64487998	Frame_Shift_Del	G	-	p.P2600fs
LIHC	TCGA-DD-A3A0-01	COL9A1	ENST00000370499.4,ENST00000357250.6,ENST00000320755.7	chr6	70984421:70984475:70990514:70990577:70990706:70990742,	70990515	70990577	70990555	70990555	Frame_Shift_Del	T	-	p.K312fs
LIHC	TCGA-DD-A3A0-01	COL9A1	ENST00000357250.6,ENST00000370496.3	chr6	70993439:70993523:71003869:71004266:71009745:71009878,	71003870	71004266	71004044	71004044	Frame_Shift_Del	G	-	p.S174fs
LIHC	TCGA-DD-A3A0-01	FAM135A	ENST00000418814.2,ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000505868.1,ENST00000361499.3	chr6	71245962:71246114:71247993:71248104:71266452:71266566,	71247994	71248104	71248017	71248017	Frame_Shift_Del	A	-	p.K1382fs
LIHC	TCGA-DD-A3A0-01	SMAP1	ENST00000316999.5,ENST00000370455.3,ENST00000422334.2	chr6	71377620:71377844:71442080:71442214:71464682:71464768,	71442081	71442214	71442173	71442173	Frame_Shift_Del	A	-	p.K71fs
LIHC	TCGA-DD-A3A0-01	SMAP1	ENST00000370452.3,ENST00000316999.5,ENST00000370455.3	chr6	71508359:71508440:71546643:71546731:71562242:71562367,	71546644	71546731	71546674	71546674	Frame_Shift_Del	A	-	p.K204fs
LIHC	TCGA-DD-A3A0-01	SMAP1	ENST00000370452.3,ENST00000316999.5,ENST00000370455.3	chr6	71562242:71562367:71566561:71566733:71567624:71567932,	71566562	71566733	71566610	71566610	Frame_Shift_Del	G	-	p.G280fs
LIHC	TCGA-DD-A3A0-01	SMAP1	ENST00000316999.5,ENST00000370455.3	chr6	71566561:71566733:71567624:71567932:71569902:71570869,	71567625	71567932	71567842	71567842	Frame_Shift_Del	C	-	p.G393fs
LIHC	TCGA-DD-A3A0-01	SMAP1	ENST00000316999.5,ENST00000370455.3	chr6	71566561:71566733:71567624:71567932:71569902:71570869,	71567625	71567932	71567876	71567876	Frame_Shift_Del	C	-	p.P405fs
LIHC	TCGA-DD-A3A0-01	RIMS1	ENST00000524197.1,ENST00000520567.1,ENST00000264839.7,ENST00000453976.2,ENST00000522291.1,ENST00000518273.1,ENST00000517960.1,ENST00000521978.1,ENST00000491071.2,ENST00000370419.2,ENST00000348717.5,ENST00000517433.1,ENST00000401910.3,ENST00000517827.1,ENST00000523963.1,ENST00000425662.2	chr6	72947525:72947625:72952016:72952140:72955517:72955564,	72952017	72952140	72952116	72952116	Frame_Shift_Del	A	-	p.E686fs
LIHC	TCGA-DD-A3A0-01	RIMS1	ENST00000521978.1	chr6	72993749:72993821:73000381:73000564:73001636:73001749,	73000382	73000564	73000526	73000526	Frame_Shift_Del	C	-	p.V1233fs
LIHC	TCGA-DD-A3A0-01	KCNQ5	ENST00000414165.2,ENST00000403813.2,ENST00000370398.1,ENST00000355635.3,ENST00000370392.1,ENST00000402622.2	chr6	73331917:73332315:73713630:73713721:73751658:73751785,	73713631	73713721	73713644	73713644	Frame_Shift_Del	T	-	p.F138fs
LIHC	TCGA-DD-A3A0-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351590	74351590	Frame_Shift_Del	A	-	p.Y117fs
LIHC	TCGA-DD-A3A0-01	SENP6	ENST00000370010.2,ENST00000327284.8	chr6	76344422:76344527:76357446:76357517:76368977:76369123,	76357447	76357517	76357503	76357503	Frame_Shift_Del	G	-	p.R179fs
LIHC	TCGA-DD-A3A0-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412371	76412371	Frame_Shift_Del	T	-	p.F767fs
LIHC	TCGA-DD-A3A0-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412391	76412391	Frame_Shift_Del	C	-	p.F773fs
LIHC	TCGA-DD-A3A0-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412402	76412402	Frame_Shift_Del	A	-	p.E777fs
LIHC	TCGA-DD-A3A0-01	MYO6	ENST00000369977.3,ENST00000369981.3	chr6	76604962:76604977:76608089:76608128:76617321:76617425,	76608090	76608128	76608118	76608118	Frame_Shift_Del	T	-	p.F1066fs
LIHC	TCGA-DD-A3A0-01	PHIP	ENST00000479165.1,ENST00000275034.4	chr6	79680497:79680605:79688308:79688428:79692602:79692660,	79688309	79688428	79688344	79688344	Frame_Shift_Del	G	-	p.R953fs
LIHC	TCGA-DD-A3A0-01	TTK	ENST00000369798.2,ENST00000515751.1	chr6	80724179:80724303:80732040:80732189:80736094:80736231,	80732041	80732189	80732105	80732105	Frame_Shift_Del	A	-	p.R391fs
LIHC	TCGA-DD-A3A0-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80881074	80881074	Frame_Shift_Del	T	-	p.F238fs
LIHC	TCGA-DD-A3A0-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924019	82924019	Frame_Shift_Del	T	-	p.N710fs
LIHC	TCGA-DD-A3A0-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924027	82924027	Frame_Shift_Del	T	-	p.K707fs
LIHC	TCGA-DD-A3A0-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924086	82924086	Frame_Shift_Del	T	-	p.S688fs
LIHC	TCGA-DD-A3A0-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924381	82924381	Frame_Shift_Del	A	-	p.F589fs
LIHC	TCGA-DD-A3A0-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82923943:82924546:82925792:82925967:82927676:82927854,	82925793	82925967	82925797	82925797	Frame_Shift_Del	T	-	p.T533fs
LIHC	TCGA-DD-A3A0-01	UBE3D	ENST00000430071.2,ENST00000237186.6,ENST00000369747.3,ENST00000509102.1	chr6	83602743:83602761:83667030:83667169:83728691:83728855,	83667031	83667169	83667080	83667080	Frame_Shift_Del	T	-	p.K367fs
LIHC	TCGA-DD-A3A0-01	UBE3D	ENST00000237186.6,ENST00000369746.2,ENST00000369747.3,ENST00000505226.1,ENST00000509102.1	chr6	83748134:83748204:83754146:83754378:83763866:83763957,	83754147	83754378	83754232	83754232	Frame_Shift_Del	T	-	p.N171fs
LIHC	TCGA-DD-A3A0-01	ME1	ENST00000541327.1,ENST00000369705.3,ENST00000543031.1	chr6	83963347:83963457:84025028:84025132:84055891:84056053,	84025029	84025132	84025059	84025059	Frame_Shift_Del	A	-	p.L225fs
LIHC	TCGA-DD-A3A0-01	CYB5R4	ENST00000369681.5,ENST00000479164.1	chr6	84644313:84644454:84645942:84646095:84649774:84649925,	84645943	84646095	84646043	84646043	Frame_Shift_Del	A	-	p.I352fs
LIHC	TCGA-DD-A3A0-01	CYB5R4	ENST00000369681.5,ENST00000479164.1	chr6	84644313:84644454:84645942:84646095:84649774:84649925,	84645943	84646095	84646053	84646053	Frame_Shift_Del	C	-	p.P356fs
LIHC	TCGA-DD-A3A0-01	RARS2	ENST00000369536.5	chr6	88228541:88228609:88229300:88229425:88229897:88229970,	88229301	88229425	88229348	88229348	Frame_Shift_Del	A	-	p.L397fs
LIHC	TCGA-DD-A3A0-01	ORC3	ENST00000546266.1	chr6	88311501:88311599:88313101:88313246:88315634:88315739,88304070:88304125:88313101:88313246:88315634:88315739,	88313102	88313246	88313244	88313244	Frame_Shift_Del	T	-	p.L107fs
LIHC	TCGA-DD-A3A0-01	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4,ENST00000417380.2	chr6	88313101:88313246:88315634:88315739:88317390:88317542,	88315635	88315739	88315683	88315683	Frame_Shift_Del	C	-	p.A124fs
LIHC	TCGA-DD-A3A0-01	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4,ENST00000417380.2	chr6	88321806:88321966:88326031:88326145:88331071:88331205,	88326032	88326145	88326123	88326123	Frame_Shift_Del	A	-	p.Q322fs
LIHC	TCGA-DD-A3A0-01	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4	chr6	88344562:88344679:88346124:88346204:88362833:88362932,	88346125	88346204	88346153	88346153	Frame_Shift_Del	A	-	p.E444fs
LIHC	TCGA-DD-A3A0-01	RNGTT	ENST00000369485.4,ENST00000369475.3	chr6	89479492:89479593:89511282:89511351:89554075:89554198,	89511283	89511351	89511328	89511328	Frame_Shift_Del	T	-	p.K431fs
LIHC	TCGA-DD-A3A0-01	PM20D2	ENST00000275072.4	chr6	89862761:89862904:89864466:89864621:89868043:89868179,	89864467	89864621	89864571	89864571	Frame_Shift_Del	A	-	p.K289fs
LIHC	TCGA-DD-A3A0-01	UBE2J1	ENST00000435041.2	chr6	90045020:90045150:90047923:90048029:90048177:90048262,	90047924	90048029	90047986	90047986	Frame_Shift_Del	T	-	p.K122fs
LIHC	TCGA-DD-A3A0-01	RRAGD	ENST00000359203.3,ENST00000369415.4	chr6	90082155:90082304:90087389:90087532:90088942:90089057,	90087390	90087532	90087487	90087487	Frame_Shift_Del	T	-	p.I269fs
LIHC	TCGA-DD-A3A0-01	RRAGD	ENST00000492783.1,ENST00000369415.4	chr6	90088942:90089057:90089886:90090086:90097013:90097115,	90089887	90090086	90089897	90089897	Frame_Shift_Del	T	-	p.I212fs
LIHC	TCGA-DD-A3A0-01	ANKRD6	ENST00000522441.1,ENST00000485637.1	chr6	90193121:90193277:90276552:90276815:90305634:90305733,90142931:90143094:90276552:90276815:90305634:90305733,90272504:90272617:90276552:90276815:90305634:90305733,	90276553	90276815	90276753	90276753	Frame_Shift_Del	A	-	p.K20fs
LIHC	TCGA-DD-A3A0-01	MDN1	ENST00000439638.1,ENST00000428876.1,ENST00000369393.3	chr6	90460072:90460251:90461149:90461301:90463230:90463341,	90461150	90461301	90461284	90461284	Frame_Shift_Del	T	-	p.K1031fs
LIHC	TCGA-DD-A3A0-01	MMS22L	ENST00000369251.2,ENST00000508976.1,ENST00000275053.4,ENST00000509383.1	chr6	97702432:97702609:97711210:97711324:97715747:97715878,	97711211	97711324	97711226	97711226	Frame_Shift_Del	T	-	p.K309fs
LIHC	TCGA-DD-A3A0-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99856028:99856147:99857048:99857220:99858616:99858840,	99857049	99857220	99857150	99857150	Frame_Shift_Del	G	-	p.P192fs
LIHC	TCGA-DD-A3A0-01	CCNC	ENST00000520371.1,ENST00000524049.1,ENST00000523799.1,ENST00000520429.1,ENST00000484049.2,ENST00000518714.1,ENST00000326298.4,ENST00000523961.1,ENST00000486428.2,ENST00000523985.1	chr6	99997383:99997451:99998093:99998185:99998868:99998904,	99998094	99998185	99998101	99998101	Frame_Shift_Del	G	-	p.L175fs
LIHC	TCGA-DD-A3A0-01	ASCC3	ENST00000324696.4,ENST00000369162.2	chr6	101095163:101095327:101098413:101098590:101099435:101099522,	101098414	101098590	101098542	101098542	Frame_Shift_Del	A	-	p.C1042fs
LIHC	TCGA-DD-A3A0-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296196	101296196	Frame_Shift_Del	G	-	p.P210fs
LIHC	TCGA-DD-A3A0-01	GRIK2	ENST00000318991.6,ENST00000369134.4,ENST00000413795.1,ENST00000421544.1,ENST00000369138.1	chr6	102337514:102337738:102372475:102372594:102376289:102376507,	102372476	102372594	102372515	102372515	Frame_Shift_Del	C	-	p.N596fs
LIHC	TCGA-DD-A3A0-01	HACE1	ENST00000262903.4,ENST00000369125.2	chr6	105259185:105259268:105280916:105281048:105291097:105291173,	105280917	105281048	105280959	105280959	Frame_Shift_Del	C	-	p.G164fs
LIHC	TCGA-DD-A3A0-01	HACE1	ENST00000519645.1,ENST00000416605.2,ENST00000262903.4,ENST00000524020.1,ENST00000369125.2,ENST00000521962.1	chr6	105297016:105297121:105298781:105298871:105300191:105300246,	105298782	105298871	105298848	105298848	Frame_Shift_Del	T	-	p.N52fs
LIHC	TCGA-DD-A3A0-01	ATG5	ENST00000369076.3,ENST00000369070.1,ENST00000343245.3	chr6	106696024:106696119:106727535:106727698:106740902:106740981,	106727536	106727698	106727570	106727570	Frame_Shift_Del	T	-	p.K148fs
LIHC	TCGA-DD-A3A0-01	QRSL1	ENST00000369044.1	chr6	107077488:107077580:107088223:107088383:107088697:107088737,	107088224	107088383	107088273	107088273	Frame_Shift_Del	A	-	p.Q25fs
LIHC	TCGA-DD-A3A0-01	C6orf203	ENST00000443043.1,ENST00000405204.2,ENST00000311381.5	chr6	107361195:107361434:107365463:107365536:107372260:107372544,	107365464	107365536	107365511	107365511	Frame_Shift_Del	A	-	p.E178fs
LIHC	TCGA-DD-A3A0-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107954804	107954804	Frame_Shift_Del	A	-	p.A252fs
LIHC	TCGA-DD-A3A0-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107955125	107955125	Frame_Shift_Del	A	-	p.P359fs
LIHC	TCGA-DD-A3A0-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107955307	107955307	Frame_Shift_Del	C	-	p.S420fs
LIHC	TCGA-DD-A3A0-01	SCML4	ENST00000369020.3	chr6	108070887:108071017:108093375:108093590:108145329:108145490,	108093376	108093590	108093399	108093399	Frame_Shift_Del	T	-	p.R45fs
LIHC	TCGA-DD-A3A0-01	OSTM1	ENST00000193322.3,ENST00000440575.2	chr6	108366034:108366044:108370456:108370622:108372234:108372270,	108370457	108370622	108370588	108370588	Frame_Shift_Del	A	-	p.F273fs
LIHC	TCGA-DD-A3A0-01	OSTM1	ENST00000193322.3,ENST00000440575.2	chr6	108370456:108370622:108372234:108372402:108375693:108375791,	108372235	108372402	108372297	108372297	Frame_Shift_Del	T	-	p.M241fs
LIHC	TCGA-DD-A3A0-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108986045	108986045	Frame_Shift_Del	G	-	p.W670fs
LIHC	TCGA-DD-A3A0-01	ARMC2	ENST00000392644.4,ENST00000368972.3	chr6	109220896:109220995:109225432:109225608:109232101:109232204,	109225433	109225608	109225533	109225533	Frame_Shift_Del	C	-	p.L317fs
LIHC	TCGA-DD-A3A0-01	ARMC2	ENST00000392644.4,ENST00000368972.3	chr6	109285382:109285515:109286182:109286343:109294559:109294985,	109286183	109286343	109286337	109286337	Frame_Shift_Del	T	-	p.F814fs
LIHC	TCGA-DD-A3A0-01	CEP57L1	ENST00000520761.1,ENST00000520610.1	chr6	109466421:109466584:109467960:109468140:109471368:109471442,109416764:109416778:109467960:109468140:109471320:109471442,	109467961	109468140	109467991	109467991	Frame_Shift_Del	A	-	p.E64fs
LIHC	TCGA-DD-A3A0-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2	chr6	109768275:109768432:109768559:109768643:109768883:109768925,	109768560	109768643	109768576	109768576	Frame_Shift_Del	G	-	p.P704fs
LIHC	TCGA-DD-A3A0-01	AK9	ENST00000424296.2,ENST00000470564.1	chr6	109818998:109819168:109820246:109820443:109827529:109827621,	109820247	109820443	109820253	109820253	Frame_Shift_Del	T	-	p.K1680fs
LIHC	TCGA-DD-A3A0-01	AK9	ENST00000424296.2,ENST00000470564.1	chr6	109818998:109819168:109820246:109820443:109827529:109827621,	109820247	109820443	109820270	109820270	Frame_Shift_Del	T	-	p.M1675fs
LIHC	TCGA-DD-A3A0-01	AK9	ENST00000285397.5,ENST00000424296.2,ENST00000368948.2,ENST00000341338.6	chr6	109954446:109954526:109962720:109962819:109965816:109965891,	109962721	109962819	109962799	109962799	Frame_Shift_Del	T	-	p.K285fs
LIHC	TCGA-DD-A3A0-01	FIG4	ENST00000441478.2,ENST00000230124.3,ENST00000415980.1	chr6	110087931:110088098:110098124:110098263:110106172:110106231,	110098125	110098263	110098159	110098159	Frame_Shift_Del	G	-	p.L595fs
LIHC	TCGA-DD-A3A0-01	FIG4	ENST00000441478.2,ENST00000230124.3,ENST00000415980.1	chr6	110087931:110088098:110098124:110098263:110106172:110106231,	110098125	110098263	110098219	110098219	Frame_Shift_Del	T	-	p.Y615fs
LIHC	TCGA-DD-A3A0-01	WASF1	ENST00000447287.1,ENST00000392588.1,ENST00000368938.1	chr6	110434528:110434663:110448671:110448832:110499800:110499945,	110448672	110448832	110448789	110448789	Frame_Shift_Del	T	-	p.R6fs
LIHC	TCGA-DD-A3A0-01	CDC40	ENST00000368930.1,ENST00000368932.1,ENST00000307731.1,ENST00000606893.1	chr6	110514384:110514471:110522760:110522890:110528708:110528792,	110522761	110522890	110522877	110522877	Frame_Shift_Del	T	-	p.T131fs
LIHC	TCGA-DD-A3A0-01	RPF2	ENST00000441448.2	chr6	111303252:111303332:111306208:111306341:111310230:111310268,	111306209	111306341	111306297	111306297	Frame_Shift_Del	G	-	p.G39fs
LIHC	TCGA-DD-A3A0-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111636469:111636584:111643771:111643881:111650734:111650941,	111643772	111643881	111643800	111643800	Frame_Shift_Del	C	-	p.A2697fs
LIHC	TCGA-DD-A3A0-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111678216:111678328:111680024:111680217:111685055:111685181,	111680025	111680217	111680156	111680156	Frame_Shift_Del	G	-	p.P2236fs
LIHC	TCGA-DD-A3A0-01	TRAF3IP2	ENST00000532708.1,ENST00000359831.4,ENST00000392556.4,ENST00000340026.6,ENST00000368761.5	chr6	111888826:111888895:111894097:111894186:111896845:111897024,	111894098	111894186	111894123	111894123	Frame_Shift_Del	A	-	p.L423fs
LIHC	TCGA-DD-A3A0-01	TRAF3IP2	ENST00000528599.1,ENST00000532708.1,ENST00000359831.4,ENST00000392556.4,ENST00000340026.6,ENST00000368761.5	chr6	111894097:111894186:111896845:111897024:111901399:111901592,	111896846	111897024	111896902	111896902	Frame_Shift_Del	G	-	p.P382fs
LIHC	TCGA-DD-A3A0-01	TRAF3IP2	ENST00000532708.1,ENST00000392556.4,ENST00000340026.6	chr6	111901399:111901592:111912460:111913297:111926978:111927073,111901399:111901592:111912460:111913297:111922398:111922509,	111912461	111913297	111912505	111912505	Frame_Shift_Del	T	-	p.N262fs
LIHC	TCGA-DD-A3A0-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000521693.1,ENST00000230538.7,ENST00000604740.1,ENST00000522006.1	chr6	112443263:112443404:112450123:112450277:112451077:112451190,	112450124	112450277	112450166	112450166	Frame_Shift_Del	T	-	p.K1415fs
LIHC	TCGA-DD-A3A0-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000521693.1,ENST00000230538.7,ENST00000604740.1,ENST00000522006.1	chr6	112443263:112443404:112450123:112450277:112451077:112451190,	112450124	112450277	112450244	112450244	Frame_Shift_Del	T	-	p.Q1389fs
LIHC	TCGA-DD-A3A0-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112465995:112466135:112469358:112469538:112471712:112471829,	112469359	112469538	112469516	112469516	Frame_Shift_Del	C	-	p.G732fs
LIHC	TCGA-DD-A3A0-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000521398.1,ENST00000522006.1	chr6	112510332:112510407:112512837:112513052:112522808:112522889,	112512838	112513052	112512918	112512918	Frame_Shift_Del	A	-	p.L213fs
LIHC	TCGA-DD-A3A0-01	RWDD1	ENST00000392526.1,ENST00000487832.2,ENST00000466444.2	chr6	116911434:116911567:116912050:116912113:116914142:116914432,	116912051	116912113	116912097	116912097	Frame_Shift_Del	C	-	p.I198fs
LIHC	TCGA-DD-A3A0-01	CEP85L	ENST00000434604.1,ENST00000368488.5	chr6	118953615:118953774:118973862:118973971:119031198:119031231,	118973863	118973971	118973894	118973894	Frame_Shift_Del	T	-	p.K17fs
LIHC	TCGA-DD-A3A0-01	FAM184A	ENST00000475529.2,ENST00000521043.1,ENST00000338891.7	chr6	119287999:119288117:119295592:119295739:119296188:119296373,	119295593	119295739	119295703	119295703	Frame_Shift_Del	T	-	p.K935fs
LIHC	TCGA-DD-A3A0-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345237	119345237	Frame_Shift_Del	T	-	p.T301fs
LIHC	TCGA-DD-A3A0-01	TBC1D32	ENST00000275159.6	chr6	121482093:121482202:121526220:121526309:121544381:121544498,121491550:121491673:121526220:121526309:121544381:121544498,	121526221	121526309	121526265	121526265	Frame_Shift_Del	A	-	p.I842fs
LIHC	TCGA-DD-A3A0-01	SMPDL3A	ENST00000487215.1	chr6	123110470:123110603:123116821:123117035:123117968:123118113,	123116822	123117035	123116827	123116827	Frame_Shift_Del	T	-	p.F40fs
LIHC	TCGA-DD-A3A0-01	TRDN	ENST00000398178.3	chr6	123545237:123545276:123573556:123573580:123576225:123576270,	123573557	123573580	123573573	123573573	Frame_Shift_Del	T	-	p.K653fs
LIHC	TCGA-DD-A3A0-01	TRDN	ENST00000334268.4,ENST00000398178.3	chr6	123759207:123759267:123760088:123760148:123786050:123786128,	123760089	123760148	123760094	123760094	Frame_Shift_Del	T	-	p.K330fs
LIHC	TCGA-DD-A3A0-01	HDDC2	ENST00000318787.9,ENST00000608461.1,ENST00000609477.1	chr6	125613986:125614055:125621683:125621805:125622994:125623083,	125621684	125621805	125621689	125621689	Frame_Shift_Del	T	-	p.K67fs
LIHC	TCGA-DD-A3A0-01	TRMT11	ENST00000334379.5,ENST00000479748.1,ENST00000368332.3,ENST00000461129.1,ENST00000450358.1	chr6	126319695:126319830:126320602:126320759:126329537:126329618,	126320603	126320759	126320645	126320645	Frame_Shift_Del	A	-	p.K190fs
LIHC	TCGA-DD-A3A0-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128404859:128404969:128410834:128411137:128505576:128505870,	128410835	128411137	128410951	128410951	Frame_Shift_Del	G	-	p.P450fs
LIHC	TCGA-DD-A3A0-01	EPB41L2	ENST00000368128.2,ENST00000530481.1,ENST00000525193.1,ENST00000528282.1,ENST00000529208.1,ENST00000445890.2,ENST00000525271.1,ENST00000392427.3,ENST00000527411.1,ENST00000527659.1,ENST00000337057.3	chr6	131247744:131247849:131276244:131276457:131277133:131277625,	131276245	131276457	131276376	131276376	Frame_Shift_Del	T	-	p.R192fs
LIHC	TCGA-DD-A3A0-01	AKAP7	ENST00000368123.4,ENST00000431975.2	chr6	131520600:131520713:131540800:131540948:131602669:131603083,	131540801	131540948	131540900	131540900	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-DD-A3A0-01	ARG1	ENST00000275196.5,ENST00000356962.2,ENST00000368087.3	chr6	131902358:131902518:131903760:131903855:131904199:131904304,	131903761	131903855	131903848	131903848	Frame_Shift_Del	G	-	p.G185fs
LIHC	TCGA-DD-A3A0-01	VNN2	ENST00000326499.6,ENST00000525270.1	chr6	133072283:133072657:133073599:133073888:133076981:133077174,	133073600	133073888	133073744	133073744	Frame_Shift_Del	G	-	p.H228fs
LIHC	TCGA-DD-A3A0-01	SLC18B1	ENST00000275227.4	chr6	133105071:133105228:133108572:133108720:133110902:133110976,	133108573	133108720	133108710	133108710	Frame_Shift_Del	G	-	p.R122fs
LIHC	TCGA-DD-A3A0-01	TBPL1	ENST00000237264.4	chr6	134305586:134305617:134305714:134305809:134308098:134308637,	134305715	134305809	134305780	134305780	Frame_Shift_Del	T	-	p.I151fs
LIHC	TCGA-DD-A3A0-01	HBS1L	ENST00000314674.3	chr6	135323952:135323980:135358948:135359164:135360710:135360905,	135358949	135359164	135359046	135359046	Frame_Shift_Del	T	-	p.K183fs
LIHC	TCGA-DD-A3A0-01	MYB	ENST00000525940.1,ENST00000526320.1	chr6	135515493:135515598:135516885:135517055:135520045:135520188,	135516886	135517055	135516913	135516913	Frame_Shift_Del	G	-	p.G326fs
LIHC	TCGA-DD-A3A0-01	MYB	ENST00000524588.1,ENST00000528343.1,ENST00000534044.1,ENST00000339290.5,ENST00000527615.1,ENST00000525002.1,ENST00000367814.4,ENST00000367812.2,ENST00000316528.8	chr6	135515493:135515598:135516885:135517140:135520045:135520188,	135516886	135517140	135516913	135516913	Frame_Shift_Del	G	-	p.G326fs
LIHC	TCGA-DD-A3A0-01	MYB	ENST00000526565.1,ENST00000528774.1,ENST00000341911.5	chr6	135516885:135517055:135518098:135518461:135520045:135520188,135516885:135517140:135518098:135518461:135520045:135520188,	135518099	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
LIHC	TCGA-DD-A3A0-01	MYB	ENST00000533384.1	chr6	135516885:135517140:135517863:135518461:135520045:135520188,	135517864	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
LIHC	TCGA-DD-A3A0-01	AHI1	ENST00000265602.6,ENST00000498558.1,ENST00000367800.4,ENST00000457866.2	chr6	135606518:135606785:135611560:135611663:135618569:135618630,135607536:135607686:135611560:135611663:135621637:135621670,135606518:135606785:135611560:135611663:135621637:135621670,	135611561	135611663	135611576	135611576	Frame_Shift_Del	T	-	p.K1191fs
LIHC	TCGA-DD-A3A0-01	IFNGR1	ENST00000367739.4,ENST00000543628.1	chr6	137518968:137519776:137522017:137522145:137524635:137524822,	137522018	137522145	137522126	137522126	Frame_Shift_Del	A	-	p.V252fs
LIHC	TCGA-DD-A3A0-01	TNFAIP3	ENST00000237289.4	chr6	138195981:138196172:138196824:138196972:138197132:138197303,	138196825	138196972	138196934	138196934	Frame_Shift_Del	T	-	p.L199fs
LIHC	TCGA-DD-A3A0-01	NHSL1	ENST00000426841.2,ENST00000343505.5,ENST00000342260.5,ENST00000427025.2,ENST00000533765.1,ENST00000491526.2	chr6	138768260:138768330:138794442:138794570:138817355:138817508,	138794443	138794570	138794512	138794512	Frame_Shift_Del	G	-	p.P138fs
LIHC	TCGA-DD-A3A0-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091217	143091217	Frame_Shift_Del	C	-	p.G1553fs
LIHC	TCGA-DD-A3A0-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091816	143091816	Frame_Shift_Del	A	-	p.S1354fs
LIHC	TCGA-DD-A3A0-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143093892	143093892	Frame_Shift_Del	A	-	p.S662fs
LIHC	TCGA-DD-A3A0-01	PEX3	ENST00000367591.4	chr6	143792693:143792748:143793296:143793465:143795922:143795993,	143793297	143793465	143793338	143793338	Frame_Shift_Del	A	-	p.Q207fs
LIHC	TCGA-DD-A3A0-01	FUCA2	ENST00000002165.6	chr6	143823491:143823702:143825049:143825389:143828373:143828561,	143825050	143825389	143825271	143825271	Frame_Shift_Del	A	-	p.F177fs
LIHC	TCGA-DD-A3A0-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700167	149700167	Frame_Shift_Del	C	-	p.S372fs
LIHC	TCGA-DD-A3A0-01	GINM1	ENST00000367419.5	chr6	149901728:149901859:149903575:149903739:149911862:149912884,	149903576	149903739	149903595	149903595	Frame_Shift_Del	A	-	p.E246fs
LIHC	TCGA-DD-A3A0-01	GINM1	ENST00000367419.5	chr6	149901728:149901859:149903575:149903739:149911862:149912884,	149903576	149903739	149903717	149903717	Frame_Shift_Del	T	-	p.F288fs
LIHC	TCGA-DD-A3A0-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150004633	150004633	Frame_Shift_Del	G	-	p.P531fs
LIHC	TCGA-DD-A3A0-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005428	150005428	Frame_Shift_Del	G	-	p.P266fs
LIHC	TCGA-DD-A3A0-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005515	150005515	Frame_Shift_Del	G	-	p.P240fs
LIHC	TCGA-DD-A3A0-01	PCMT1	ENST00000484601.1,ENST00000495487.1,ENST00000367384.2,ENST00000367380.5,ENST00000367378.1,ENST00000486585.1,ENST00000544496.1,ENST00000464889.1	chr6	150094273:150094305:150111089:150111194:150114684:150114768,	150111090	150111194	150111167	150111167	Frame_Shift_Del	A	-	p.G148fs
LIHC	TCGA-DD-A3A0-01	PCMT1	ENST00000367384.2,ENST00000367380.5,ENST00000367378.1,ENST00000544496.1,ENST00000464889.1	chr6	150114684:150114805:150117550:150117636:150123335:150123505,	150117551	150117636	150117584	150117584	Frame_Shift_Del	C	-	p.A209fs
LIHC	TCGA-DD-A3A0-01	LRP11	ENST00000546019.1	chr6	150164118:150164260:150174138:150174296:150184543:150185162,150164118:150164260:150174138:150174296:150186020:150186199,	150174139	150174296	150174245	150174245	Frame_Shift_Del	A	-	p.L222fs
LIHC	TCGA-DD-A3A0-01	IYD	ENST00000392255.3,ENST00000392256.2,ENST00000500320.3,ENST00000425615.3,ENST00000367335.3,ENST00000229447.5,ENST00000344419.3	chr6	150710487:150710679:150713480:150713640:150715234:150715391,	150713481	150713640	150713616	150713616	Frame_Shift_Del	G	-	p.W169fs
LIHC	TCGA-DD-A3A0-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151054719:151055228:151089773:151089874:151107525:151107595,	151089774	151089874	151089803	151089803	Frame_Shift_Del	A	-	p.T147fs
LIHC	TCGA-DD-A3A0-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151152549	151152549	Frame_Shift_Del	T	-	p.F768fs
LIHC	TCGA-DD-A3A0-01	MTHFD1L	ENST00000367307.4,ENST00000443074.1	chr6	151206769:151206870:151208980:151209117:151226785:151226897,151206769:151206870:151208980:151209117:151219995:151220043,	151208981	151209117	151209005	151209005	Frame_Shift_Del	T	-	p.I223fs
LIHC	TCGA-DD-A3A0-01	MTHFD1L	ENST00000367308.4	chr6	151206769:151206870:151208977:151209117:151219995:151220043,151206769:151206870:151208977:151209117:151226785:151226897,	151208978	151209117	151209005	151209005	Frame_Shift_Del	T	-	p.I223fs
LIHC	TCGA-DD-A3A0-01	MTHFD1L	ENST00000367307.4,ENST00000443074.1	chr6	151206769:151206870:151208980:151209117:151226785:151226897,151206769:151206870:151208980:151209117:151219995:151220043,	151208981	151209117	151209015	151209015	Frame_Shift_Del	G	-	p.V226fs
LIHC	TCGA-DD-A3A0-01	MTHFD1L	ENST00000367308.4	chr6	151206769:151206870:151208977:151209117:151219995:151220043,151206769:151206870:151208977:151209117:151226785:151226897,	151208978	151209117	151209015	151209015	Frame_Shift_Del	G	-	p.V226fs
LIHC	TCGA-DD-A3A0-01	MTHFD1L	ENST00000367321.3,ENST00000441122.1	chr6	151243340:151243438:151247257:151247431:151257939:151258051,	151247258	151247431	151247288	151247288	Frame_Shift_Del	A	-	p.P371fs
LIHC	TCGA-DD-A3A0-01	CCDC170	ENST00000367290.5	chr6	151815174:151815320:151857452:151857581:151859179:151859436,	151857453	151857581	151857558	151857558	Frame_Shift_Del	A	-	p.K55fs
LIHC	TCGA-DD-A3A0-01	CCDC170	ENST00000239374.7,ENST00000367290.5	chr6	151869438:151869624:151894308:151894626:151907023:151907224,	151894309	151894626	151894574	151894574	Frame_Shift_Del	C	-	p.T347fs
LIHC	TCGA-DD-A3A0-01	CCDC170	ENST00000239374.7,ENST00000367290.5	chr6	151869438:151869624:151894308:151894626:151907023:151907224,	151894309	151894626	151894613	151894613	Frame_Shift_Del	A	-	p.E360fs
LIHC	TCGA-DD-A3A0-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000443427.1,ENST00000338799.5,ENST00000427531.2	chr6	152201791:152201906:152265307:152265643:152332790:152332929,	152265308	152265643	152265522	152265522	Frame_Shift_Del	G	-	p.P325fs
LIHC	TCGA-DD-A3A0-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367251.3,ENST00000367255.5,ENST00000367256.5,ENST00000367257.4,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152534746:152534894:152536040:152536195:152539391:152539520,	152536041	152536195	152536108	152536108	Frame_Shift_Del	T	-	p.I7427fs
LIHC	TCGA-DD-A3A0-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367251.3,ENST00000367255.5,ENST00000367256.5,ENST00000367257.4,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152534746:152534894:152536040:152536195:152539391:152539520,	152536041	152536195	152536119	152536119	Frame_Shift_Del	T	-	p.N7423fs
LIHC	TCGA-DD-A3A0-01	MTRF1L	ENST00000485283.1,ENST00000463251.1	chr6	153315647:153315811:153316397:153316454:153319684:153319764,	153316398	153316454	153316408	153316408	Frame_Shift_Del	A	-	p.L129fs
LIHC	TCGA-DD-A3A0-01	MTRF1L	ENST00000367230.1	chr6	153315647:153315811:153316378:153316454:153319684:153319764,	153316379	153316454	153316408	153316408	Frame_Shift_Del	A	-	p.L129fs
LIHC	TCGA-DD-A3A0-01	MTRF1L	ENST00000367233.5,ENST00000367231.5	chr6	153315647:153315811:153316270:153316454:153319684:153319764,	153316271	153316454	153316408	153316408	Frame_Shift_Del	A	-	p.L129fs
LIHC	TCGA-DD-A3A0-01	MTRF1L	ENST00000485512.1,ENST00000464135.1	chr6	153315647:153315811:153316270:153316429:153319684:153319764,	153316271	153316429	153316408	153316408	Frame_Shift_Del	A	-	p.L129fs
LIHC	TCGA-DD-A3A0-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155141310:155141467:155143409:155143543:155145367:155145512,	155143410	155143543	155143515	155143515	Frame_Shift_Del	T	-	p.V633fs
LIHC	TCGA-DD-A3A0-01	TIAM2	ENST00000461783.3,ENST00000318981.5,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1	chr6	155448623:155448734:155450351:155451551:155458310:155458746,	155450352	155451551	155450539	155450539	Frame_Shift_Del	C	-	p.A61fs
LIHC	TCGA-DD-A3A0-01	ARID1B	ENST00000478761.2,ENST00000367148.1,ENST00000319584.6,ENST00000275248.4,ENST00000414678.2	chr6	157495159:157495251:157495980:157496139:157502102:157502312,	157495981	157496139	157496011	157496011	Frame_Shift_Del	C	-	p.P1044fs
LIHC	TCGA-DD-A3A0-01	SERAC1	ENST00000435180.1,ENST00000367104.3,ENST00000607071.1	chr6	158537216:158537314:158538758:158538853:158540060:158540093,	158538759	158538853	158538839	158538839	Frame_Shift_Del	T	-	p.K441fs
LIHC	TCGA-DD-A3A0-01	SERAC1	ENST00000607742.1,ENST00000367104.3,ENST00000607071.1,ENST00000367101.1,ENST00000367102.2	chr6	158549139:158549302:158551404:158551518:158564087:158564216,	158551405	158551518	158551473	158551473	Frame_Shift_Del	T	-	p.S262fs
LIHC	TCGA-DD-A3A0-01	TULP4	ENST00000367097.3,ENST00000367094.2	chr6	158873165:158873300:158882594:158882761:158900782:158901007,	158882595	158882761	158882726	158882726	Frame_Shift_Del	G	-	p.G331fs
LIHC	TCGA-DD-A3A0-01	RSPH3	ENST00000252655.1,ENST00000367069.2	chr6	159404693:159404839:159407311:159407453:159414870:159414958,	159407312	159407453	159407357	159407357	Frame_Shift_Del	T	-	p.T101fs
LIHC	TCGA-DD-A3A0-01	PNLDC1	ENST00000275275.5,ENST00000610273.1	chr6	160221305:160221415:160221704:160221861:160222144:160222218,	160221705	160221861	160221848	160221848	Frame_Shift_Del	C	-	p.P30fs
LIHC	TCGA-DD-A3A0-01	PNLDC1	ENST00000392167.3	chr6	160221305:160221415:160221803:160221861:160222144:160222218,	160221804	160221861	160221848	160221848	Frame_Shift_Del	C	-	p.P30fs
LIHC	TCGA-DD-A3A0-01	SLC22A1	ENST00000366963.4,ENST00000539263.1	chr6	160564572:160564681:160575829:160575942:160579547:160579583,160564572:160564681:160575829:160575942:160577006:160577106,	160575830	160575942	160575873	160575873	Frame_Shift_Del	G	-	p.G477fs
LIHC	TCGA-DD-A3A0-01	SLC22A1	ENST00000366963.4,ENST00000539263.1	chr6	160564572:160564681:160575829:160575942:160579547:160579583,160564572:160564681:160575829:160575942:160577006:160577106,	160575830	160575942	160575883	160575883	Frame_Shift_Del	C	-	p.T480fs
LIHC	TCGA-DD-A3A0-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470596	161470596	Frame_Shift_Del	C	-	p.S431fs
LIHC	TCGA-DD-A3A0-01	MAP3K4	ENST00000348824.7	chr6	161514804:161514883:161518111:161518208:161522923:161523024,161514804:161514871:161518111:161518208:161522923:161523024,	161518112	161518208	161518188	161518188	Frame_Shift_Del	C	-	p.I1168fs
LIHC	TCGA-DD-A3A0-01	QKI	ENST00000537883.1	chr6	163899811:163899928:163956013:163956157:163983013:163983101,163876362:163876453:163956013:163956157:163983013:163983101,	163956014	163956157	163956042	163956042	Frame_Shift_Del	G	-	p.W144fs
LIHC	TCGA-DD-A3A0-01	SFT2D1	ENST00000478705.1,ENST00000487841.1,ENST00000488773.1,ENST00000361731.3	chr6	166741763:166741845:166742994:166743077:166743648:166743735,	166742995	166743077	166742997	166742997	Frame_Shift_Del	G	-	p.A77fs
LIHC	TCGA-DD-A3A0-01	FGFR1OP	ENST00000349556.4	chr6	167417751:167417889:167424300:167424381:167435896:167436119,	167424301	167424381	167424348	167424348	Frame_Shift_Del	G	-	p.E162fs
LIHC	TCGA-DD-A3A0-01	KIF25	ENST00000443060.2,ENST00000354419.2	chr6	168442768:168442831:168443240:168443396:168445506:168445743,	168443241	168443396	168443258	168443258	Frame_Shift_Del	G	-	p.G283fs
LIHC	TCGA-DD-A3A0-01	SMOC2	ENST00000354536.5,ENST00000356284.2	chr6	168999497:168999684:169008836:169008919:169051360:169051459,	169008837	169008919	169008866	169008866	Frame_Shift_Del	C	-	p.A296fs
LIHC	TCGA-DD-A3A0-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170626704	170626704	Frame_Shift_Del	A	-	p.K76fs
LIHC	TCGA-DD-A3A0-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170626877	170626877	Frame_Shift_Del	C	-	p.I133fs
LIHC	TCGA-DD-A3A0-01	PDGFA	ENST00000354513.5	chr7	538129:538211:540067:540136:540752:540879,	540068	540136	540104	540104	Frame_Shift_Del	T	-	p.R205fs
LIHC	TCGA-DD-A3A0-01	PDGFA	ENST00000354513.5	chr7	538129:538211:540067:540136:540752:540879,	540068	540136	540132	540132	Frame_Shift_Del	C	-	p.R195fs
LIHC	TCGA-DD-A3A0-01	PDGFA	ENST00000354513.5	chr7	538129:538211:540067:540136:540752:540879,	540068	540136	540134	540134	Frame_Shift_Del	T	-	p.R195fs
LIHC	TCGA-DD-A3A0-01	PRKAR1B	ENST00000400758.2,ENST00000544935.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1	chr7	591025:591107:618892:619014:624144:624205,	618893	619014	618940	618940	Frame_Shift_Del	T	-	p.I282fs
LIHC	TCGA-DD-A3A0-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1	chr7	624144:624205:635782:635941:645829:645876,	635783	635941	635861	635861	Frame_Shift_Del	G	-	p.P210fs
LIHC	TCGA-DD-A3A0-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1	chr7	624144:624205:635782:635941:645829:645876,	635783	635941	635920	635920	Frame_Shift_Del	C	-	p.V191fs
LIHC	TCGA-DD-A3A0-01	SUN1	ENST00000456758.2,ENST00000452783.2,ENST00000450538.1	chr7	856279:856310:872141:872238:878434:878623,	872142	872238	872167	872167	Frame_Shift_Del	T	-	p.D60fs
LIHC	TCGA-DD-A3A0-01	ZFAND2A	ENST00000316495.3,ENST00000401903.1	chr7	1192708:1192860:1195088:1195220:1197291:1197368,	1195089	1195220	1195168	1195168	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A3A0-01	INTS1	ENST00000389470.4,ENST00000404767.3	chr7	1532645:1532742:1533389:1533547:1534451:1534529,	1533390	1533547	1533393	1533393	Frame_Shift_Del	C	-	p.D818fs
LIHC	TCGA-DD-A3A0-01	BRAT1	ENST00000340611.4,ENST00000469750.1	chr7	2578045:2578398:2578812:2578985:2579177:2579256,	2578813	2578985	2578879	2578879	Frame_Shift_Del	G	-	p.A568fs
LIHC	TCGA-DD-A3A0-01	BRAT1	ENST00000421712.1	chr7	2584542:2584690:2586957:2587112:2593938:2594081,2583253:2583596:2586957:2587112:2593938:2594081,	2586958	2587112	2586996	2586996	Frame_Shift_Del	T	-	p.T82fs
LIHC	TCGA-DD-A3A0-01	AMZ1	ENST00000312371.4	chr7	2748221:2748350:2748708:2748878:2749273:2749450,	2748709	2748878	2748769	2748769	Frame_Shift_Del	C	-	p.A221fs
LIHC	TCGA-DD-A3A0-01	FOXK1	ENST00000328914.4	chr7	4721939:4722499:4780468:4780654:4794089:4794246,	4780469	4780654	4780576	4780576	Frame_Shift_Del	C	-	p.S223fs
LIHC	TCGA-DD-A3A0-01	RADIL	ENST00000473130.1	chr7	4856869:4856982:4862024:4862181:4871771:4871809,	4862025	4862181	4862071	4862071	Frame_Shift_Del	T	-	p.K523fs
LIHC	TCGA-DD-A3A0-01	RADIL	ENST00000538469.1,ENST00000484211.1,ENST00000445392.1,ENST00000399583.3	chr7	4856869:4856982:4862024:4862185:4871771:4871809,	4862025	4862185	4862071	4862071	Frame_Shift_Del	T	-	p.K523fs
LIHC	TCGA-DD-A3A0-01	SLC29A4	ENST00000396872.3,ENST00000297195.4	chr7	5331360:5331452:5334490:5334565:5336566:5336829,	5334491	5334565	5334546	5334546	Frame_Shift_Del	G	-	p.Q200fs
LIHC	TCGA-DD-A3A0-01	SLC29A4	ENST00000406453.3	chr7	5331360:5331452:5334495:5334565:5336566:5336829,	5334496	5334565	5334546	5334546	Frame_Shift_Del	G	-	p.Q200fs
LIHC	TCGA-DD-A3A0-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5348505:5348580:5348762:5348999:5352133:5353490,	5348763	5348999	5348802	5348802	Frame_Shift_Del	G	-	p.P2862fs
LIHC	TCGA-DD-A3A0-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5348505:5348580:5348762:5348999:5352133:5353490,	5348763	5348999	5348921	5348921	Frame_Shift_Del	C	-	p.D2823fs
LIHC	TCGA-DD-A3A0-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5396546:5396907:5399028:5399200:5401224:5401353,	5399029	5399200	5399092	5399092	Frame_Shift_Del	C	-	p.G1590fs
LIHC	TCGA-DD-A3A0-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5402280:5402456:5410005:5410995:5413685:5414112,	5410006	5410995	5410441	5410441	Frame_Shift_Del	C	-	p.V1262fs
LIHC	TCGA-DD-A3A0-01	TNRC18	ENST00000434361.1,ENST00000399537.4,ENST00000430969.1	chr7	5428935:5428967:5430115:5430259:5434070:5434114,	5430116	5430259	5430195	5430195	Frame_Shift_Del	G	-	p.P136fs
LIHC	TCGA-DD-A3A0-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5430115:5430259:5434070:5434226:5460690:5461120,	5434071	5434226	5434124	5434124	Frame_Shift_Del	G	-	p.P97fs
LIHC	TCGA-DD-A3A0-01	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5540757	5540757	Frame_Shift_Del	G	-	p.S381fs
LIHC	TCGA-DD-A3A0-01	ACTB	ENST00000493945.1	chr7	5567371:5567522:5567634:5568350:5568791:5569031,	5567635	5568350	5568197	5568197	Frame_Shift_Del	G	-	p.H173fs
LIHC	TCGA-DD-A3A0-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5756346:5756397:5760663:5760803:5764954:5765069,	5760664	5760803	5760676	5760676	Frame_Shift_Del	T	-	p.K487fs
LIHC	TCGA-DD-A3A0-01	RNF216	ENST00000425013.2	chr7	5778906:5778983:5780603:5781275:5792476:5792610,	5780604	5781275	5780658	5780658	Frame_Shift_Del	C	-	p.G273fs
LIHC	TCGA-DD-A3A0-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5780658	5780658	Frame_Shift_Del	C	-	p.G273fs
LIHC	TCGA-DD-A3A0-01	CCZ1	ENST00000537980.1,ENST00000325974.6	chr7	5952473:5952585:5958497:5958531:5959479:5959597,	5958498	5958531	5958519	5958519	Frame_Shift_Del	T	-	p.F326fs
LIHC	TCGA-DD-A3A0-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6026881	6026881	Frame_Shift_Del	C	-	p.G505fs
LIHC	TCGA-DD-A3A0-01	DAGLB	ENST00000436575.1,ENST00000428902.2,ENST00000297056.6	chr7	6464382:6464466:6465618:6465745:6472467:6472590,6464382:6464466:6465618:6465745:6470110:6470238,	6465619	6465745	6465648	6465648	Frame_Shift_Del	C	-	p.D343fs
LIHC	TCGA-DD-A3A0-01	DAGLB	ENST00000436575.1,ENST00000297056.6	chr7	6472467:6472590:6474392:6474651:6485583:6485735,6472467:6472590:6474392:6474651:6475992:6476164,	6474393	6474651	6474395	6474395	Frame_Shift_Del	A	-	p.S226fs
LIHC	TCGA-DD-A3A0-01	C7orf26	ENST00000359073.5	chr7	6629774:6630106:6631333:6631498:6634065:6634231,	6631334	6631498	6631365	6631365	Frame_Shift_Del	T	-	p.I94fs
LIHC	TCGA-DD-A3A0-01	ZNF12	ENST00000405858.1,ENST00000342651.5,ENST00000404360.1	chr7	6732232:6732334:6736969:6737065:6737315:6737442,	6736970	6737065	6737049	6737049	Frame_Shift_Del	T	-	p.K53fs
LIHC	TCGA-DD-A3A0-01	C1GALT1	ENST00000419721.1,ENST00000436587.2	chr7	7222260:7222451:7273933:7274170:7277885:7277965,	7273934	7274170	7274012	7274012	Frame_Shift_Del	T	-	p.L22fs
LIHC	TCGA-DD-A3A0-01	RPA3	ENST00000396682.2,ENST00000223129.4	chr7	7677494:7677603:7678700:7678775:7679950:7680208,	7678701	7678775	7678757	7678757	Frame_Shift_Del	T	-	p.M40fs
LIHC	TCGA-DD-A3A0-01	GLCCI1	ENST00000438949.1,ENST00000223145.5	chr7	8099725:8099878:8110550:8110761:8124526:8124647,	8110551	8110761	8110691	8110691	Frame_Shift_Del	T	-	p.P369fs
LIHC	TCGA-DD-A3A0-01	ICA1	ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8153552:8153674:8167502:8167772:8178469:8178511,	8167503	8167772	8167716	8167716	Frame_Shift_Del	G	-	p.L376fs
LIHC	TCGA-DD-A3A0-01	PHF14	ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11062494:11062606:11068307:11068445:11075266:11075413,	11068308	11068445	11068343	11068343	Frame_Shift_Del	A	-	p.R451fs
LIHC	TCGA-DD-A3A0-01	PHF14	ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11076611:11076718:11078386:11078482:11080298:11080402,	11078387	11078482	11078477	11078477	Frame_Shift_Del	G	-	p.G691fs
LIHC	TCGA-DD-A3A0-01	PHF14	ENST00000470665.1,ENST00000445996.2,ENST00000423760.2	chr7	11101590:11101712:11150976:11151094:11209042:11209117,	11150977	11151094	11151004	11151004	Frame_Shift_Del	T	-	p.H609fs
LIHC	TCGA-DD-A3A0-01	VWDE	ENST00000452576.2,ENST00000521169.1,ENST00000275358.3	chr7	12373090:12373194:12375766:12375862:12376613:12376709,	12375767	12375862	12375838	12375838	Frame_Shift_Del	T	-	p.N1528fs
LIHC	TCGA-DD-A3A0-01	DGKB	ENST00000399322.3,ENST00000471732.1,ENST00000258767.5,ENST00000403963.1,ENST00000406247.3,ENST00000444700.2,ENST00000407950.1,ENST00000402815.1,ENST00000403951.2	chr7	14622676:14622762:14647058:14647133:14652964:14653038,	14647059	14647133	14647104	14647104	Frame_Shift_Del	T	-	p.N464fs
LIHC	TCGA-DD-A3A0-01	BZW2	ENST00000452975.2,ENST00000407633.1,ENST00000437745.1,ENST00000415365.1,ENST00000405202.1,ENST00000433922.2,ENST00000436868.1,ENST00000258761.3	chr7	16729421:16729531:16734458:16734629:16736539:16736672,	16734459	16734629	16734494	16734494	Frame_Shift_Del	T	-	p.H229fs
LIHC	TCGA-DD-A3A0-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20438482:20438617:20441343:20441749:20444250:20444476,	20441344	20441749	20441665	20441665	Frame_Shift_Del	A	-	p.K535fs
LIHC	TCGA-DD-A3A0-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20739447:20739552:20739680:20739758:20744346:20744430,	20739681	20739758	20739723	20739723	Frame_Shift_Del	T	-	p.L768fs
LIHC	TCGA-DD-A3A0-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20784854:20785061:20792982:20793129:20795049:20795247,	20792983	20793129	20793068	20793068	Frame_Shift_Del	A	-	p.Q1172fs
LIHC	TCGA-DD-A3A0-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469258	21469258	Frame_Shift_Del	C	-	p.P159fs
LIHC	TCGA-DD-A3A0-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21600708:21600788:21603803:21604015:21609686:21609917,	21603804	21604015	21603816	21603816	Frame_Shift_Del	C	-	p.A332fs
LIHC	TCGA-DD-A3A0-01	RAPGEF5	ENST00000401957.2,ENST00000344041.6	chr7	22184661:22184840:22186514:22186637:22190024:22190122,	22186515	22186637	22186621	22186621	Frame_Shift_Del	T	-	p.N481fs
LIHC	TCGA-DD-A3A0-01	STEAP1B	ENST00000406890.2	chr7	22532295:22532348:22532942:22533398:22534390:22534505,	22532943	22533398	22533027	22533027	Frame_Shift_Del	A	-	p.F171fs
LIHC	TCGA-DD-A3A0-01	STEAP1B	ENST00000483679.1,ENST00000424363.1,ENST00000439708.1,ENST00000404369.4	chr7	22532295:22532348:22532942:22533455:22534390:22534505,	22532943	22533455	22533027	22533027	Frame_Shift_Del	A	-	p.F171fs
LIHC	TCGA-DD-A3A0-01	FAM126A	ENST00000409923.1,ENST00000440481.1	chr7	22985601:22985782:22986570:22986866:22999874:23000034,	22986571	22986866	22986642	22986642	Frame_Shift_Del	T	-	p.M407fs
LIHC	TCGA-DD-A3A0-01	FAM126A	ENST00000409923.1,ENST00000440481.1	chr7	22985601:22985782:22986570:22986866:22999874:23000034,	22986571	22986866	22986768	22986768	Frame_Shift_Del	C	-	p.E364fs
LIHC	TCGA-DD-A3A0-01	FAM126A	ENST00000498833.1	chr7	22985601:22985782:22986651:22986866:22999874:23000034,	22986652	22986866	22986768	22986768	Frame_Shift_Del	C	-	p.E364fs
LIHC	TCGA-DD-A3A0-01	FAM126A	ENST00000409923.1,ENST00000432176.2,ENST00000440481.1	chr7	23015828:23015924:23016311:23016427:23016959:23017040,	23016312	23016427	23016348	23016348	Frame_Shift_Del	G	-	p.P165fs
LIHC	TCGA-DD-A3A0-01	FAM126A	ENST00000409763.1,ENST00000409923.1,ENST00000467005.1	chr7	23017887:23018067:23030679:23030758:23053543:23053693,23023612:23023664:23030679:23030758:23053543:23053693,	23030680	23030758	23030709	23030709	Frame_Shift_Del	C	-	p.V9fs
LIHC	TCGA-DD-A3A0-01	KLHL7	ENST00000409689.1,ENST00000542558.1,ENST00000521082.1,ENST00000545443.1,ENST00000322231.7,ENST00000339077.5,ENST00000539124.1	chr7	23180387:23180563:23183469:23183644:23191685:23191828,	23183470	23183644	23183512	23183512	Frame_Shift_Del	A	-	p.N199fs
LIHC	TCGA-DD-A3A0-01	CCDC126	ENST00000409765.1	chr7	23637585:23637670:23650789:23651172:23682549:23682555,23637133:23637224:23650789:23651172:23682549:23682555,	23650790	23651172	23650955	23650955	Frame_Shift_Del	A	-	p.R7fs
LIHC	TCGA-DD-A3A0-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24903114:24903218:24904960:24905084:24905688:24905856,	24904961	24905084	24905030	24905030	Frame_Shift_Del	A	-	p.S202fs
LIHC	TCGA-DD-A3A0-01	C7orf31	ENST00000283905.3,ENST00000409280.1	chr7	25191214:25191303:25194629:25194811:25198119:25198149,	25194630	25194811	25194778	25194778	Frame_Shift_Del	G	-	p.P149fs
LIHC	TCGA-DD-A3A0-01	C7orf31	ENST00000443822.1,ENST00000283905.3,ENST00000409280.1	chr7	25198119:25198149:25200807:25200879:25207907:25208084,	25200808	25200879	25200833	25200833	Frame_Shift_Del	T	-	p.S120fs
LIHC	TCGA-DD-A3A0-01	C7orf31	ENST00000443822.1,ENST00000283905.3,ENST00000415598.1,ENST00000409280.1	chr7	25200843:25200879:25207907:25208084:25218793:25218951,	25207908	25208084	25207994	25207994	Frame_Shift_Del	G	-	p.P75fs
LIHC	TCGA-DD-A3A0-01	HOXA3	ENST00000317201.2	chr7	27146630:27148339:27149733:27150379:27162177:27162261,	27149734	27150379	27149827	27149827	Frame_Shift_Del	G	-	p.L146fs
LIHC	TCGA-DD-A3A0-01	HOXA3	ENST00000317201.2	chr7	27146630:27148339:27149733:27150379:27162177:27162261,	27149734	27150379	27150191	27150191	Frame_Shift_Del	C	-	p.G23fs
LIHC	TCGA-DD-A3A0-01	TAX1BP1	ENST00000396319.2,ENST00000543117.1,ENST00000265393.6,ENST00000409980.1	chr7	27797649:27797752:27805452:27805640:27809294:27809453,	27805453	27805640	27805482	27805482	Frame_Shift_Del	T	-	p.F99fs
LIHC	TCGA-DD-A3A0-01	TAX1BP1	ENST00000396319.2,ENST00000543117.1,ENST00000265393.6,ENST00000416801.2,ENST00000409980.1,ENST00000457186.2,ENST00000433216.2	chr7	27833968:27834065:27835734:27835838:27839583:27839709,	27835735	27835838	27835745	27835745	Frame_Shift_Del	T	-	p.D515fs
LIHC	TCGA-DD-A3A0-01	CHN2	ENST00000474070.1,ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000546235.1	chr7	29437988:29438102:29440158:29440444:29519894:29519972,	29440159	29440444	29440303	29440303	Frame_Shift_Del	A	-	p.S145fs
LIHC	TCGA-DD-A3A0-01	SCRN1	ENST00000242059.5,ENST00000409497.1,ENST00000434476.2,ENST00000426154.1,ENST00000425819.2	chr7	29966067:29966248:29976171:29976337:29980297:29980492,	29976172	29976337	29976262	29976262	Frame_Shift_Del	A	-	p.F272fs
LIHC	TCGA-DD-A3A0-01	SCRN1	ENST00000242059.5,ENST00000409497.1,ENST00000434476.2,ENST00000426154.1,ENST00000425819.2	chr7	29976171:29976337:29980297:29980492:29983592:29983795,	29980298	29980492	29980384	29980384	Frame_Shift_Del	C	-	p.G218fs
LIHC	TCGA-DD-A3A0-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30490924	30490924	Frame_Shift_Del	G	-	p.P703fs
LIHC	TCGA-DD-A3A0-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30491223	30491223	Frame_Shift_Del	G	-	p.L604fs
LIHC	TCGA-DD-A3A0-01	GGCT	ENST00000409436.1,ENST00000426081.1	chr7	30536692:30536851:30538418:30538554:30540151:30540296,30537356:30537512:30538418:30538554:30540151:30540296,	30538419	30538554	30538448	30538448	Frame_Shift_Del	T	-	p.S132fs
LIHC	TCGA-DD-A3A0-01	GARS	ENST00000389266.3,ENST00000478124.1	chr7	30649200:30649346:30651711:30651861:30655511:30655674,	30651712	30651861	30651736	30651736	Frame_Shift_Del	G	-	p.Q302fs
LIHC	TCGA-DD-A3A0-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142909	31142909	Frame_Shift_Del	T	-	p.F369fs
LIHC	TCGA-DD-A3A0-01	ADCYAP1R1	ENST00000304166.4,ENST00000409363.1	chr7	31132302:31132349:31142850:31142980:31144481:31144513,	31142851	31142980	31142968	31142968	Frame_Shift_Del	G	-	p.L388fs
LIHC	TCGA-DD-A3A0-01	AVL9	ENST00000404479.1,ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32582866:32582873:32584305:32584391:32588458:32588530,	32584306	32584391	32584356	32584356	Frame_Shift_Del	T	-	p.F89fs
LIHC	TCGA-DD-A3A0-01	NT5C3A	ENST00000242210.7,ENST00000405342.1,ENST00000396152.2,ENST00000381626.2,ENST00000610140.1,ENST00000409467.1,ENST00000409787.1,ENST00000456458.1,ENST00000461851.1	chr7	33061664:33061711:33063650:33063720:33066428:33066527,	33063651	33063720	33063673	33063673	Frame_Shift_Del	C	-	p.G61fs
LIHC	TCGA-DD-A3A0-01	BBS9	ENST00000355070.2	chr7	33388679:33388782:33390830:33390935:33392470:33392485,33388679:33388782:33390830:33390935:33397466:33397607,	33390831	33390935	33390872	33390872	Frame_Shift_Del	A	-	p.K492fs
LIHC	TCGA-DD-A3A0-01	BBS9	ENST00000350941.3	chr7	33388679:33388782:33397466:33397607:33407378:33407474,	33397467	33397607	33397553	33397553	Frame_Shift_Del	A	-	p.K547fs
LIHC	TCGA-DD-A3A0-01	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	34101613:34101659:34118468:34118798:34125367:34125704,	34118469	34118798	34118563	34118563	Frame_Shift_Del	A	-	p.T391fs
LIHC	TCGA-DD-A3A0-01	DPY19L1	ENST00000310974.4	chr7	34979764:34979939:34981376:34981496:34982226:34982251,	34981377	34981496	34981447	34981447	Frame_Shift_Del	A	-	p.L467fs
LIHC	TCGA-DD-A3A0-01	HERPUD2	ENST00000396081.1,ENST00000426180.1,ENST00000311350.3	chr7	35673921:35674039:35674744:35675068:35677959:35678082,	35674745	35675068	35674967	35674967	Frame_Shift_Del	G	-	p.P241fs
LIHC	TCGA-DD-A3A0-01	HERPUD2	ENST00000438224.1	chr7	35677959:35678082:35707043:35707198:35733793:35734176,	35707044	35707198	35707153	35707153	Frame_Shift_Del	T	-	p.T129fs
LIHC	TCGA-DD-A3A0-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373623	36373623	Frame_Shift_Del	A	-	p.L332fs
LIHC	TCGA-DD-A3A0-01	KIAA0895	ENST00000436884.1	chr7	36374654:36374787:36396510:36397199:36406524:36406810,36374654:36374787:36396510:36397199:36406312:36406522,36375762:36375906:36396510:36397199:36406524:36406810,36375762:36375906:36396510:36397199:36406719:36406780,	36396511	36397199	36396646	36396646	Frame_Shift_Del	G	-	p.P193fs
LIHC	TCGA-DD-A3A0-01	KIAA0895	ENST00000436884.1	chr7	36374654:36374787:36396510:36397199:36406524:36406810,36374654:36374787:36396510:36397199:36406312:36406522,36375762:36375906:36396510:36397199:36406524:36406810,36375762:36375906:36396510:36397199:36406719:36406780,	36396511	36397199	36397022	36397022	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-DD-A3A0-01	ANLN	ENST00000265748.2,ENST00000396068.2,ENST00000424865.1	chr7	36435874:36436028:36438687:36439002:36445789:36445875,	36438688	36439002	36438716	36438716	Frame_Shift_Del	A	-	p.S67fs
LIHC	TCGA-DD-A3A0-01	ANLN	ENST00000429082.1	chr7	36446010:36446175:36447326:36447565:36450122:36450275,	36447327	36447565	36447450	36447450	Frame_Shift_Del	G	-	p.T327fs
LIHC	TCGA-DD-A3A0-01	ANLN	ENST00000441696.1,ENST00000452877.1	chr7	36446159:36446175:36447342:36447565:36450122:36450275,36446141:36446179:36447342:36447565:36450122:36450275,	36447343	36447565	36447450	36447450	Frame_Shift_Del	G	-	p.T327fs
LIHC	TCGA-DD-A3A0-01	ANLN	ENST00000396068.2	chr7	36450667:36450775:36455366:36455493:36456688:36456757,36450667:36450775:36455366:36455493:36458852:36459076,	36455367	36455493	36455414	36455414	Frame_Shift_Del	A	-	p.S481fs
LIHC	TCGA-DD-A3A0-01	ANLN	ENST00000265748.2	chr7	36455366:36455493:36456688:36456799:36458852:36459076,	36456689	36456799	36456739	36456739	Frame_Shift_Del	T	-	p.F525fs
LIHC	TCGA-DD-A3A0-01	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027355	40027355	Frame_Shift_Del	A	-	p.K458fs
LIHC	TCGA-DD-A3A0-01	POLD2	ENST00000452185.1	chr7	44157541:44157663:44161432:44161881:44163109:44163129,	44161433	44161881	44161637	44161637	Frame_Shift_Del	C	-	p.A7fs
LIHC	TCGA-DD-A3A0-01	POLD2	ENST00000496539.1,ENST00000470867.1	chr7	44157541:44157663:44161432:44161708:44163109:44163129,	44161433	44161708	44161637	44161637	Frame_Shift_Del	C	-	p.A7fs
LIHC	TCGA-DD-A3A0-01	MYL7	ENST00000434895.1	chr7	44178467:44178621:44179119:44179263:44179380:44179459,	44179120	44179263	44179146	44179146	Frame_Shift_Del	G	-	p.Q107fs
LIHC	TCGA-DD-A3A0-01	MYL7	ENST00000458240.1,ENST00000457314.1,ENST00000223364.3	chr7	44178467:44178621:44179119:44179168:44179380:44179459,	44179120	44179168	44179146	44179146	Frame_Shift_Del	G	-	p.Q107fs
LIHC	TCGA-DD-A3A0-01	MYL7	ENST00000446581.1	chr7	44178467:44178621:44179020:44179168:44179380:44179459,	44179021	44179168	44179146	44179146	Frame_Shift_Del	G	-	p.Q107fs
LIHC	TCGA-DD-A3A0-01	CAMK2B	ENST00000395749.2	chr7	44268394:44268523:44268986:44269100:44270604:44270653,	44268987	44269100	44269096	44269096	Frame_Shift_Del	G	-	p.P410fs
LIHC	TCGA-DD-A3A0-01	CAMK2B	ENST00000424197.1	chr7	44283083:44283126:44286718:44286827:44294140:44294206,	44286719	44286827	44286739	44286739	Frame_Shift_Del	C	-	p.V133fs
LIHC	TCGA-DD-A3A0-01	CAMK2B	ENST00000497584.1,ENST00000484972.1,ENST00000457475.1,ENST00000353625.4,ENST00000353185.3,ENST00000395749.2,ENST00000440254.2,ENST00000347193.4,ENST00000258682.6,ENST00000495819.1,ENST00000350811.3,ENST00000415369.1,ENST00000358707.3,ENST00000497127.1,ENST00000346990.4,ENST00000395747.2	chr7	44283083:44283126:44286718:44286791:44294140:44294206,	44286719	44286791	44286739	44286739	Frame_Shift_Del	C	-	p.V133fs
LIHC	TCGA-DD-A3A0-01	CAMK2B	ENST00000457475.1,ENST00000353625.4,ENST00000353185.3,ENST00000395749.2,ENST00000424197.1,ENST00000440254.2,ENST00000347193.4,ENST00000258682.6,ENST00000523845.1,ENST00000358707.3,ENST00000421607.1,ENST00000346990.4,ENST00000502837.2,ENST00000395747.2	chr7	44302603:44302663:44323729:44323824:44365533:44365766,44302603:44302663:44323729:44323824:44364625:44364789,44302603:44302663:44323729:44323824:44364955:44365020,	44323730	44323824	44323744	44323744	Frame_Shift_Del	T	-	p.K49fs
LIHC	TCGA-DD-A3A0-01	NPC1L1	ENST00000289547.4,ENST00000381160.3	chr7	44571353:44571443:44571678:44571816:44573029:44573077,	44571679	44571816	44571712	44571712	Frame_Shift_Del	G	-	p.P838fs
LIHC	TCGA-DD-A3A0-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000447398.1,ENST00000449767.1,ENST00000443864.2	chr7	44646237:44646252:44663915:44664164:44684925:44685117,	44663916	44664164	44664016	44664016	Frame_Shift_Del	A	-	p.Q25fs
LIHC	TCGA-DD-A3A0-01	ZMIZ2	ENST00000416856.1	chr7	44796023:44796138:44796573:44796748:44796976:44797160,	44796574	44796748	44796622	44796622	Frame_Shift_Del	C	-	p.S81fs
LIHC	TCGA-DD-A3A0-01	ZMIZ2	ENST00000309315.4,ENST00000441627.1,ENST00000265346.7	chr7	44796023:44796138:44796545:44796748:44796976:44797160,	44796546	44796748	44796622	44796622	Frame_Shift_Del	C	-	p.S81fs
LIHC	TCGA-DD-A3A0-01	TBRG4	ENST00000258770.3,ENST00000488222.1,ENST00000494076.1,ENST00000495973.1	chr7	45142931:45143042:45143697:45143855:45144136:45144308,	45143698	45143855	45143753	45143753	Frame_Shift_Del	T	-	p.K337fs
LIHC	TCGA-DD-A3A0-01	HUS1	ENST00000446009.1,ENST00000258774.5,ENST00000432627.1,ENST00000442024.1,ENST00000458191.1,ENST00000432325.1,ENST00000436444.1	chr7	48015251:48015284:48016326:48016434:48018013:48018131,	48016327	48016434	48016383	48016383	Frame_Shift_Del	C	-	p.V137fs
LIHC	TCGA-DD-A3A0-01	ABCA13	ENST00000435803.1	chr7	48273614:48273748:48278837:48279002:48280463:48280663,	48278838	48279002	48278955	48278955	Frame_Shift_Del	A	-	p.K339fs
LIHC	TCGA-DD-A3A0-01	ABCA13	ENST00000484268.1,ENST00000453246.1,ENST00000435803.1	chr7	48416038:48416169:48427418:48427556:48428636:48428817,	48427419	48427556	48427483	48427483	Frame_Shift_Del	T	-	p.G3800fs
LIHC	TCGA-DD-A3A0-01	DDC	ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000380984.4,ENST00000444733.1	chr7	50571690:50571757:50595834:50595978:50596905:50597040,	50595835	50595978	50595925	50595925	Frame_Shift_Del	G	-	p.A208fs
LIHC	TCGA-DD-A3A0-01	DDC	ENST00000444733.1	chr7	50596905:50597040:50605557:50605677:50611582:50611680,	50605558	50605677	50605595	50605595	Frame_Shift_Del	A	-	p.L133fs
LIHC	TCGA-DD-A3A0-01	DDC	ENST00000444124.2,ENST00000357936.5,ENST00000431062.1,ENST00000380984.4	chr7	50605557:50605677:50607612:50607726:50611582:50611680,	50607613	50607726	50607639	50607639	Frame_Shift_Del	C	-	p.A97fs
LIHC	TCGA-DD-A3A0-01	GRB10	ENST00000401949.1,ENST00000402578.1,ENST00000439599.1,ENST00000402497.1,ENST00000335866.3,ENST00000398810.2,ENST00000398812.2,ENST00000403097.1,ENST00000407526.1,ENST00000406641.1	chr7	50682466:50682577:50683906:50684044:50685767:50685836,	50683907	50684044	50683980	50683980	Frame_Shift_Del	T	-	p.K299fs
LIHC	TCGA-DD-A3A0-01	COBL	ENST00000265136.7,ENST00000445054.1	chr7	51098508:51098606:51111079:51111389:51152862:51152983,	51111080	51111389	51111143	51111143	Frame_Shift_Del	G	-	p.P530fs
LIHC	TCGA-DD-A3A0-01	COBL	ENST00000265136.7,ENST00000445054.1	chr7	51098508:51098606:51111079:51111389:51152862:51152983,	51111080	51111389	51111228	51111228	Frame_Shift_Del	C	-	p.D502fs
LIHC	TCGA-DD-A3A0-01	COBL	ENST00000265136.7,ENST00000445054.1	chr7	51111079:51111389:51152862:51153001:51203854:51204028,	51152863	51153001	51152943	51152943	Frame_Shift_Del	G	-	p.P366fs
LIHC	TCGA-DD-A3A0-01	EGFR	ENST00000454757.2,ENST00000275493.2,ENST00000455089.1,ENST00000442591.1,ENST00000344576.2,ENST00000420316.2,ENST00000342916.3	chr7	55218986:55219055:55220238:55220357:55221703:55221845,	55220239	55220357	55220290	55220290	Frame_Shift_Del	C	-	p.S227fs
LIHC	TCGA-DD-A3A0-01	LANCL2	ENST00000452107.2,ENST00000254770.2	chr7	55459485:55459603:55466115:55466323:55467649:55467797,	55466116	55466323	55466241	55466241	Frame_Shift_Del	G	-	p.G150fs
LIHC	TCGA-DD-A3A0-01	CCT6A	ENST00000540286.1,ENST00000335503.3,ENST00000275603.4	chr7	56126312:56126395:56127236:56127333:56127961:56128109,	56127237	56127333	56127256	56127256	Frame_Shift_Del	G	-	p.G330fs
LIHC	TCGA-DD-A3A0-01	ZNF680	ENST00000309683.6	chr7	63982827:63982878:64004084:64004180:64023302:64023400,63982827:63982878:64004084:64004180:64004683:64004810,	64004085	64004180	64004087	64004087	Frame_Shift_Del	G	-	p.P84fs
LIHC	TCGA-DD-A3A0-01	ZNF680	ENST00000309683.6	chr7	63982827:63982878:64004084:64004180:64023302:64023400,63982827:63982878:64004084:64004180:64004683:64004810,	64004085	64004180	64004092	64004092	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A3A0-01	ASL	ENST00000380839.4	chr7	65548063:65548161:65551571:65551649:65551730:65551773,65548063:65548161:65551571:65551649:65552320:65552373,	65551572	65551649	65551616	65551616	Frame_Shift_Del	C	-	p.A164fs
LIHC	TCGA-DD-A3A0-01	TPST1	ENST00000480281.1	chr7	65705311:65706257:65751497:65751696:65817491:65817542,65670320:65670509:65751497:65751696:65817491:65817542,	65751498	65751696	65751641	65751641	Frame_Shift_Del	C	-	p.A330fs
LIHC	TCGA-DD-A3A0-01	TPST1	ENST00000480281.1,ENST00000304842.5	chr7	65751497:65751696:65817491:65817542:65821811:65821858,	65817492	65817542	65817532	65817532	Frame_Shift_Del	A	-	p.E362fs
LIHC	TCGA-DD-A3A0-01	SBDS	ENST00000246868.2	chr7	66456162:66456288:66458203:66458404:66459198:66459269,	66458204	66458404	66458210	66458210	Frame_Shift_Del	T	-	p.K151fs
LIHC	TCGA-DD-A3A0-01	AUTS2	ENST00000403018.2,ENST00000406775.2,ENST00000342771.4,ENST00000476695.1	chr7	69364271:69364484:69583117:69583219:69599521:69599557,	69583118	69583219	69583180	69583180	Frame_Shift_Del	G	-	p.K195fs
LIHC	TCGA-DD-A3A0-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72410952:72411055:72411355:72411532:72412375:72414061,	72411356	72411532	72411461	72411461	Frame_Shift_Del	C	-	p.A326fs
LIHC	TCGA-DD-A3A0-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72891917	72891917	Frame_Shift_Del	A	-	p.L625fs
LIHC	TCGA-DD-A3A0-01	ELN	ENST00000252034.7,ENST00000380553.4,ENST00000380576.5,ENST00000358929.4,ENST00000380562.4,ENST00000429192.1,ENST00000380584.4,ENST00000445912.1,ENST00000414324.1,ENST00000320399.6,ENST00000357036.5,ENST00000380575.4,ENST00000458204.1	chr7	73469045:73469099:73470600:73470765:73471001:73471043,	73470601	73470765	73470654	73470654	Frame_Shift_Del	G	-	p.G403fs
LIHC	TCGA-DD-A3A0-01	ELN	ENST00000320492.7	chr7	73469045:73469099:73470600:73470687:73471001:73471043,	73470601	73470687	73470654	73470654	Frame_Shift_Del	G	-	p.G403fs
LIHC	TCGA-DD-A3A0-01	ELN	ENST00000252034.7,ENST00000380576.5,ENST00000358929.4,ENST00000380562.4,ENST00000320492.7,ENST00000414324.1,ENST00000320399.6,ENST00000458204.1	chr7	73480023:73480062:73480273:73480327:73481061:73481106,	73480274	73480327	73480300	73480300	Frame_Shift_Del	G	-	p.G688fs
LIHC	TCGA-DD-A3A0-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000435201.1,ENST00000491052.1	chr7	73510951:73511090:73511409:73511519:73513361:73513568,	73511410	73511519	73511416	73511416	Frame_Shift_Del	G	-	p.G130fs
LIHC	TCGA-DD-A3A0-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000435201.1,ENST00000491052.1	chr7	73510951:73511090:73511409:73511519:73513361:73513568,	73511410	73511519	73511473	73511473	Frame_Shift_Del	G	-	p.G149fs
LIHC	TCGA-DD-A3A0-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000435201.1	chr7	73522200:73522287:73523234:73523366:73525977:73526037,	73523235	73523366	73523283	73523283	Frame_Shift_Del	G	-	p.G431fs
LIHC	TCGA-DD-A3A0-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000435201.1	chr7	73534912:73534968:73535221:73535379:73535468:73535631,	73535222	73535379	73535368	73535368	Frame_Shift_Del	C	-	p.D620fs
LIHC	TCGA-DD-A3A0-01	POR	ENST00000419840.1,ENST00000461988.1,ENST00000394893.1	chr7	75609676:75609806:75610365:75610490:75610834:75610924,	75610366	75610490	75610378	75610378	Frame_Shift_Del	G	-	p.G177fs
LIHC	TCGA-DD-A3A0-01	POR	ENST00000419840.1,ENST00000461988.1,ENST00000394893.1	chr7	75609676:75609806:75610365:75610490:75610834:75610924,	75610366	75610490	75610467	75610467	Frame_Shift_Del	G	-	p.L206fs
LIHC	TCGA-DD-A3A0-01	POR	ENST00000454934.1,ENST00000496888.1,ENST00000450476.1,ENST00000545601.1,ENST00000419840.1,ENST00000461988.1,ENST00000439269.1,ENST00000447222.1,ENST00000394893.1	chr7	75614094:75614276:75614375:75614525:75614896:75615031,	75614376	75614525	75614494	75614494	Frame_Shift_Del	C	-	p.A456fs
LIHC	TCGA-DD-A3A0-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76112243	76112243	Frame_Shift_Del	C	-	p.H229fs
LIHC	TCGA-DD-A3A0-01	CCDC146	ENST00000461259.1,ENST00000415740.2,ENST00000285871.4,ENST00000431197.1	chr7	76911908:76912102:76916114:76916243:76916756:76916894,	76916115	76916243	76916215	76916215	Frame_Shift_Del	A	-	p.E750fs
LIHC	TCGA-DD-A3A0-01	PTPN12	ENST00000440186.1	chr7	77210743:77210820:77212871:77212967:77214859:77214888,77200469:77200503:77212871:77212967:77214859:77214888,	77212872	77212967	77212934	77212934	Frame_Shift_Del	T	-	p.D116fs
LIHC	TCGA-DD-A3A0-01	PHTF2	ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2	chr7	77558469:77558644:77567026:77567155:77569346:77569619,	77567027	77567155	77567067	77567067	Frame_Shift_Del	A	-	p.E426fs
LIHC	TCGA-DD-A3A0-01	MAGI2	ENST00000354212.4,ENST00000519748.1,ENST00000522391.1,ENST00000419488.1	chr7	77755010:77755154:77756513:77756733:77762205:77762377,	77756514	77756733	77756539	77756539	Frame_Shift_Del	G	-	p.P1133fs
LIHC	TCGA-DD-A3A0-01	CD36	ENST00000419819.2,ENST00000394788.3,ENST00000432207.1,ENST00000435819.1,ENST00000433696.2,ENST00000447544.2,ENST00000309881.7,ENST00000534394.1,ENST00000544133.1	chr7	80290445:80290526:80292305:80292485:80293721:80293813,	80292306	80292485	80292432	80292432	Frame_Shift_Del	T	-	p.F186fs
LIHC	TCGA-DD-A3A0-01	CACNA2D1	ENST00000356860.3	chr7	81611882:81611943:81612629:81612650:81613950:81614027,	81612630	81612650	81612644	81612644	Frame_Shift_Del	T	-	p.K627fs
LIHC	TCGA-DD-A3A0-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579933	82579933	Frame_Shift_Del	C	-	p.G3324fs
LIHC	TCGA-DD-A3A0-01	SEMA3A	ENST00000436949.1,ENST00000265362.4	chr7	83689780:83689874:83739785:83739905:83758438:83758501,	83739786	83739905	83739833	83739833	Frame_Shift_Del	C	-	p.A136fs
LIHC	TCGA-DD-A3A0-01	SEMA3A	ENST00000436949.1,ENST00000265362.4	chr7	83689780:83689874:83739785:83739905:83758438:83758501,	83739786	83739905	83739889	83739889	Frame_Shift_Del	A	-	p.F117fs
LIHC	TCGA-DD-A3A0-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415682	86415682	Frame_Shift_Del	C	-	p.P193fs
LIHC	TCGA-DD-A3A0-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468620	86468620	Frame_Shift_Del	T	-	p.V597fs
LIHC	TCGA-DD-A3A0-01	KIAA1324L	ENST00000394714.2,ENST00000297222.6,ENST00000450689.2,ENST00000423294.1,ENST00000416314.1	chr7	86539127:86539317:86541387:86541561:86542256:86542381,	86541388	86541561	86541517	86541517	Frame_Shift_Del	T	-	p.K680fs
LIHC	TCGA-DD-A3A0-01	DMTF1	ENST00000449088.3,ENST00000447863.1,ENST00000394702.3,ENST00000394703.5,ENST00000413276.2,ENST00000430405.3,ENST00000412139.2,ENST00000425705.2,ENST00000579677.1,ENST00000453049.1,ENST00000331242.7,ENST00000414194.2,ENST00000446796.2,ENST00000584619.1,ENST00000547146.2,ENST00000434534.1	chr7	86794249:86794366:86795798:86795921:86800310:86800333,	86795799	86795921	86795847	86795847	Frame_Shift_Del	G	-	p.R53fs
LIHC	TCGA-DD-A3A0-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000413276.2,ENST00000473521.1,ENST00000412139.2,ENST00000579850.1,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000584619.1,ENST00000582887.1,ENST00000425406.1	chr7	86811562:86811653:86813712:86813941:86815144:86815491,	86813713	86813941	86813845	86813845	Frame_Shift_Del	A	-	p.E52fs
LIHC	TCGA-DD-A3A0-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817444	86817444	Frame_Shift_Del	A	-	p.Q147fs
LIHC	TCGA-DD-A3A0-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817444	86817444	Frame_Shift_Del	A	-	p.Q147fs
LIHC	TCGA-DD-A3A0-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87042932:87043033:87046627:87046831:87047852:87047936,	87046628	87046831	87046649	87046649	Frame_Shift_Del	T	-	p.K887fs
LIHC	TCGA-DD-A3A0-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87080938:87081110:87082259:87082451:87083850:87083908,	87082260	87082451	87082334	87082334	Frame_Shift_Del	A	-	p.F154fs
LIHC	TCGA-DD-A3A0-01	ABCB1	ENST00000543898.1,ENST00000265724.3,ENST00000482527.1	chr7	87175264:87175340:87178663:87178834:87179166:87179370,	87178664	87178834	87178822	87178822	Frame_Shift_Del	G	-	p.L523fs
LIHC	TCGA-DD-A3A0-01	ABCB1	ENST00000543898.1,ENST00000265724.3	chr7	87179783:87179894:87180040:87180154:87183076:87183248,	87180041	87180154	87180145	87180145	Frame_Shift_Del	A	-	p.S337fs
LIHC	TCGA-DD-A3A0-01	SLC25A40	ENST00000429674.1,ENST00000341119.5	chr7	87477167:87477292:87479195:87479263:87483518:87483625,	87479196	87479263	87479252	87479252	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A3A0-01	DBF4	ENST00000486925.1,ENST00000430279.1,ENST00000265728.1	chr7	87505914:87506093:87507367:87507540:87514293:87514473,	87507368	87507540	87507472	87507472	Frame_Shift_Del	T	-	p.F51fs
LIHC	TCGA-DD-A3A0-01	DBF4	ENST00000431138.1,ENST00000430279.1,ENST00000265728.1,ENST00000413643.1	chr7	87516643:87516713:87517297:87517374:87525788:87525825,	87517298	87517374	87517324	87517324	Frame_Shift_Del	A	-	p.K184fs
LIHC	TCGA-DD-A3A0-01	STEAP4	ENST00000380079.4	chr7	87910229:87910394:87911955:87912483:87913128:87913205,	87911956	87912483	87912293	87912293	Frame_Shift_Del	A	-	p.F216fs
LIHC	TCGA-DD-A3A0-01	CDK14	ENST00000406263.1,ENST00000380050.3,ENST00000431029.1,ENST00000436577.2,ENST00000265741.3	chr7	90419887:90419967:90492489:90492584:90528605:90528668,	90492490	90492584	90492509	90492509	Frame_Shift_Del	A	-	p.L142fs
LIHC	TCGA-DD-A3A0-01	CDK14	ENST00000487145.1,ENST00000406263.1,ENST00000380050.3,ENST00000431029.1,ENST00000436577.2,ENST00000265741.3	chr7	90528605:90528668:90546915:90547039:90585011:90585108,	90546916	90547039	90546988	90546988	Frame_Shift_Del	C	-	p.P213fs
LIHC	TCGA-DD-A3A0-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603085	91603085	Frame_Shift_Del	A	-	p.K51fs
LIHC	TCGA-DD-A3A0-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91630161:91632549:91641742:91641956:91643562:91643642,	91641743	91641956	91641911	91641911	Frame_Shift_Del	A	-	p.K1175fs
LIHC	TCGA-DD-A3A0-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91641814:91641956:91643562:91643642:91645442:91645581,	91643563	91643642	91643633	91643633	Frame_Shift_Del	T	-	p.Y1213fs
LIHC	TCGA-DD-A3A0-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708684	91708684	Frame_Shift_Del	A	-	p.K2425fs
LIHC	TCGA-DD-A3A0-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708696	91708696	Frame_Shift_Del	A	-	p.K2429fs
LIHC	TCGA-DD-A3A0-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708711	91708711	Frame_Shift_Del	A	-	p.K2434fs
LIHC	TCGA-DD-A3A0-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91709093	91709093	Frame_Shift_Del	A	-	p.E2561fs
LIHC	TCGA-DD-A3A0-01	LRRD1	ENST00000430130.2,ENST00000458448.1	chr7	91774197:91774388:91775396:91775514:91779847:91780009,	91775397	91775514	91775438	91775438	Frame_Shift_Del	T	-	p.K785fs
LIHC	TCGA-DD-A3A0-01	KRIT1	ENST00000394505.2,ENST00000340022.2,ENST00000394503.2,ENST00000394507.1,ENST00000475770.1,ENST00000412043.2	chr7	91852135:91852292:91855033:91855141:91855839:91855996,	91855034	91855141	91855061	91855061	Frame_Shift_Del	T	-	p.K409fs
LIHC	TCGA-DD-A3A0-01	KRIT1	ENST00000394505.2,ENST00000340022.2,ENST00000394503.2,ENST00000394507.1,ENST00000412043.2	chr7	91864121:91864237:91864716:91864960:91865726:91865856,	91864717	91864960	91864835	91864835	Frame_Shift_Del	T	-	p.N204fs
LIHC	TCGA-DD-A3A0-01	ANKIB1	ENST00000265742.3	chr7	91974291:91974380:91980263:91980408:91981789:91981956,	91980264	91980408	91980277	91980277	Frame_Shift_Del	A	-	p.K367fs
LIHC	TCGA-DD-A3A0-01	ANKIB1	ENST00000265742.3	chr7	91981789:91981956:91991498:91991587:92000790:92000921,	91991499	91991587	91991558	91991558	Frame_Shift_Del	A	-	p.Q486fs
LIHC	TCGA-DD-A3A0-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92130820:92130987:92131203:92131393:92132354:92132378,	92131204	92131393	92131356	92131356	Frame_Shift_Del	T	-	p.N755fs
LIHC	TCGA-DD-A3A0-01	FAM133B	ENST00000438306.1,ENST00000427372.1,ENST00000445716.1	chr7	92191595:92191682:92195327:92195375:92199136:92199229,	92195328	92195375	92195334	92195334	Frame_Shift_Del	T	-	p.K207fs
LIHC	TCGA-DD-A3A0-01	FAM133B	ENST00000415397.2	chr7	92191595:92191682:92195323:92195375:92199136:92199229,	92195324	92195375	92195334	92195334	Frame_Shift_Del	T	-	p.K207fs
LIHC	TCGA-DD-A3A0-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000341723.4	chr7	92826797:92826923:92837892:92838189:92844713:92844998,	92837893	92838189	92838146	92838146	Frame_Shift_Del	T	-	p.K253fs
LIHC	TCGA-DD-A3A0-01	COL1A2	ENST00000297268.6	chr7	94029507:94029600:94030878:94030932:94033867:94033912,	94030879	94030932	94030920	94030920	Frame_Shift_Del	C	-	p.G89fs
LIHC	TCGA-DD-A3A0-01	CASD1	ENST00000297273.4	chr7	94162990:94163114:94164620:94164835:94166783:94167206,	94164621	94164835	94164648	94164648	Frame_Shift_Del	A	-	p.E219fs
LIHC	TCGA-DD-A3A0-01	CASD1	ENST00000297273.4	chr7	94174856:94175013:94176407:94176487:94178844:94178946,	94176408	94176487	94176449	94176449	Frame_Shift_Del	T	-	p.F559fs
LIHC	TCGA-DD-A3A0-01	PPP1R9A	ENST00000340694.4,ENST00000433881.1,ENST00000433360.1,ENST00000456331.2,ENST00000289495.5,ENST00000424654.1	chr7	94539209:94540820:94740570:94740703:94750023:94750144,	94740571	94740703	94740656	94740656	Frame_Shift_Del	A	-	p.E494fs
LIHC	TCGA-DD-A3A0-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442538	95442538	Frame_Shift_Del	C	-	p.T85fs
LIHC	TCGA-DD-A3A0-01	DYNC1I1	ENST00000519371.1,ENST00000359388.4,ENST00000324972.6,ENST00000437599.1,ENST00000457059.1,ENST00000447467.2,ENST00000537881.1	chr7	95606823:95606913:95614126:95614289:95616367:95616467,	95614127	95614289	95614249	95614249	Frame_Shift_Del	T	-	p.F253fs
LIHC	TCGA-DD-A3A0-01	SLC25A13	ENST00000542654.1,ENST00000472162.2	chr7	95822459:95822495:95838149:95838289:95864113:95864229,95822459:95822495:95838149:95838289:95906507:95906650,	95838150	95838289	95838188	95838188	Frame_Shift_Del	T	-	p.R144fs
LIHC	TCGA-DD-A3A0-01	SLC25A13	ENST00000416240.2,ENST00000265631.5	chr7	95838149:95838289:95906507:95906650:95926209:95926263,95864113:95864229:95906507:95906650:95926209:95926263,	95906508	95906650	95906600	95906600	Frame_Shift_Del	A	-	p.F40fs
LIHC	TCGA-DD-A3A0-01	SLC25A13	ENST00000416240.2,ENST00000265631.5	chr7	95838149:95838289:95906507:95906650:95926209:95926263,95864113:95864229:95906507:95906650:95926209:95926263,	95906508	95906650	95906609	95906609	Frame_Shift_Del	G	-	p.P37fs
LIHC	TCGA-DD-A3A0-01	TAC1	ENST00000319273.5,ENST00000350485.4	chr7	97363034:97363131:97363559:97363604:97364137:97364161,	97363560	97363604	97363572	97363572	Frame_Shift_Del	A	-	p.E78fs
LIHC	TCGA-DD-A3A0-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821034	97821034	Frame_Shift_Del	G	-	p.E419fs
LIHC	TCGA-DD-A3A0-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97822982	97822982	Frame_Shift_Del	C	-	p.P1069fs
LIHC	TCGA-DD-A3A0-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97823579	97823579	Frame_Shift_Del	A	-	p.K1268fs
LIHC	TCGA-DD-A3A0-01	TECPR1	ENST00000379795.3,ENST00000463402.1,ENST00000447648.2,ENST00000490842.1	chr7	97846124:97846815:97847003:97847123:97847247:97847354,	97847004	97847123	97847073	97847073	Frame_Shift_Del	C	-	p.G1105fs
LIHC	TCGA-DD-A3A0-01	TECPR1	ENST00000479911.1,ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000490842.1	chr7	97857325:97857428:97858350:97858478:97860272:97860430,	97858351	97858478	97858413	97858413	Frame_Shift_Del	C	-	p.G783fs
LIHC	TCGA-DD-A3A0-01	BAIAP2L1	ENST00000005260.8	chr7	97937000:97937208:97939756:97939904:97941408:97941576,	97939757	97939904	97939854	97939854	Frame_Shift_Del	G	-	p.P286fs
LIHC	TCGA-DD-A3A0-01	BAIAP2L1	ENST00000005260.8,ENST00000473569.1,ENST00000462558.1	chr7	97946548:97946668:97949369:97949441:97949548:97949610,	97949370	97949441	97949433	97949433	Frame_Shift_Del	T	-	p.K95fs
LIHC	TCGA-DD-A3A0-01	TRRAP	ENST00000446306.3,ENST00000355540.3	chr7	98535272:98535443:98540571:98540640:98545843:98545963,	98540572	98540640	98540617	98540617	Frame_Shift_Del	G	-	p.G1485fs
LIHC	TCGA-DD-A3A0-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98576391:98576527:98579391:98579583:98580886:98581082,	98579392	98579583	98579412	98579412	Frame_Shift_Del	G	-	p.K2878fs
LIHC	TCGA-DD-A3A0-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98643320:98643424:98645306:98645505:98647185:98647332,	98645307	98645505	98645354	98645354	Frame_Shift_Del	G	-	p.Q395fs
LIHC	TCGA-DD-A3A0-01	SMURF1	ENST00000361368.2	chr7	98645306:98645505:98647185:98647332:98648979:98649064,	98647186	98647332	98647324	98647324	Frame_Shift_Del	T	-	p.N298fs
LIHC	TCGA-DD-A3A0-01	SMURF1	ENST00000361125.1	chr7	98647185:98647332:98648537:98648615:98648979:98649064,	98648538	98648615	98648579	98648579	Frame_Shift_Del	A	-	p.F281fs
LIHC	TCGA-DD-A3A0-01	ARPC1B	ENST00000451682.1,ENST00000252725.5	chr7	98987527:98987635:98988515:98988722:98988800:98988876,	98988516	98988722	98988671	98988671	Frame_Shift_Del	G	-	p.W219fs
LIHC	TCGA-DD-A3A0-01	ZNF655	ENST00000467680.1	chr7	99158155:99158318:99159510:99160117:99161485:99162328,	99159511	99160117	99159985	99159985	Frame_Shift_Del	T	-	p.I79fs
LIHC	TCGA-DD-A3A0-01	ZNF655	ENST00000422164.1,ENST00000493277.1,ENST00000422647.1,ENST00000427931.1,ENST00000424881.1	chr7	99158155:99158318:99169310:99169415:99169867:99174076,	99169311	99169415	99169334	99169334	Frame_Shift_Del	G	-	p.G54fs
LIHC	TCGA-DD-A3A0-01	CYP3A43	ENST00000481362.1,ENST00000312017.5,ENST00000222382.5,ENST00000434806.1,ENST00000421837.2	chr7	99425665:99425809:99434075:99434169:99436742:99436795,	99434076	99434169	99434153	99434153	Frame_Shift_Del	T	-	p.I50fs
LIHC	TCGA-DD-A3A0-01	CYP3A43	ENST00000312017.5,ENST00000222382.5,ENST00000354829.2	chr7	99445788:99445877:99447168:99447317:99453213:99453341,	99447169	99447317	99447289	99447289	Frame_Shift_Del	T	-	p.D214fs
LIHC	TCGA-DD-A3A0-01	AZGP1	ENST00000292401.4	chr7	99564890:99564909:99565777:99566053:99569368:99569629,	99565778	99566053	99565983	99565983	Frame_Shift_Del	T	-	p.K133fs
LIHC	TCGA-DD-A3A0-01	AZGP1	ENST00000292401.4,ENST00000411734.1	chr7	99565777:99566053:99569368:99569629:99573567:99573640,	99569369	99569629	99569571	99569571	Frame_Shift_Del	G	-	p.P42fs
LIHC	TCGA-DD-A3A0-01	MCM7	ENST00000485286.1,ENST00000489841.1,ENST00000303887.5,ENST00000354230.3	chr7	99693396:99693790:99694923:99695007:99695236:99695368,	99694924	99695007	99694981	99694981	Frame_Shift_Del	C	-	p.D382fs
LIHC	TCGA-DD-A3A0-01	AP4M1	ENST00000421755.1	chr7	99704035:99704137:99704280:99704535:99707813:99707942,	99704281	99704535	99704377	99704377	Frame_Shift_Del	C	-	p.P419fs
LIHC	TCGA-DD-A3A0-01	TAF6	ENST00000421980.1	chr7	99711023:99711028:99711302:99711392:99711490:99711577,	99711303	99711392	99711334	99711334	Frame_Shift_Del	C	-	p.G101fs
LIHC	TCGA-DD-A3A0-01	TAF6	ENST00000453269.2,ENST00000449571.1,ENST00000472509.1,ENST00000344095.4,ENST00000452041.1,ENST00000523306.1,ENST00000493322.1,ENST00000437822.2	chr7	99710469:99710540:99711238:99711392:99711490:99711577,99711023:99711028:99711238:99711392:99711490:99711577,	99711239	99711392	99711334	99711334	Frame_Shift_Del	C	-	p.G101fs
LIHC	TCGA-DD-A3A0-01	TAF6	ENST00000487288.1	chr7	99710469:99710540:99710971:99711392:99711490:99711577,	99710972	99711392	99711334	99711334	Frame_Shift_Del	C	-	p.G101fs
LIHC	TCGA-DD-A3A0-01	GPC2	ENST00000480087.1,ENST00000471050.1,ENST00000292377.2,ENST00000490629.1	chr7	99769812:99769840:99771457:99771620:99772307:99772347,	99771458	99771620	99771554	99771554	Frame_Shift_Del	C	-	p.V266fs
LIHC	TCGA-DD-A3A0-01	GPC2	ENST00000471717.1,ENST00000292377.2	chr7	99772307:99772388:99773194:99773517:99773829:99773988,	99773195	99773517	99773221	99773221	Frame_Shift_Del	C	-	p.D208fs
LIHC	TCGA-DD-A3A0-01	GPC2	ENST00000471717.1,ENST00000292377.2	chr7	99772307:99772388:99773194:99773517:99773829:99773988,	99773195	99773517	99773510	99773510	Frame_Shift_Del	A	-	p.F111fs
LIHC	TCGA-DD-A3A0-01	PILRA	ENST00000198536.2	chr7	99971909:99972056:99987510:99987729:99995501:99995535,	99987511	99987729	99987534	99987534	Frame_Shift_Del	C	-	p.P160fs
LIHC	TCGA-DD-A3A0-01	ZCWPW1	ENST00000398027.2	chr7	99998716:99998959:100000138:100000199:100001316:100001408,99999511:99999664:100000138:100000199:100001316:100001408,	100000139	100000199	100000151	100000151	Frame_Shift_Del	T	-	p.T487fs
LIHC	TCGA-DD-A3A0-01	ZCWPW1	ENST00000472716.1	chr7	100016768:100016812:100017252:100017436:100018244:100018301,	100017253	100017436	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
LIHC	TCGA-DD-A3A0-01	ZCWPW1	ENST00000464510.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100016768:100016812:100017252:100017506:100018244:100018301,	100017253	100017506	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
LIHC	TCGA-DD-A3A0-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028576	100028576	Frame_Shift_Del	C	-	p.A312fs
LIHC	TCGA-DD-A3A0-01	TSC22D4	ENST00000393991.1	chr7	100071896:100072063:100074899:100075082:100076416:100076792,	100074900	100075082	100075075	100075075	Frame_Shift_Del	G	-	p.P196fs
LIHC	TCGA-DD-A3A0-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075075	100075075	Frame_Shift_Del	G	-	p.P196fs
LIHC	TCGA-DD-A3A0-01	LRCH4	ENST00000476881.1,ENST00000497245.1,ENST00000467201.1,ENST00000310300.6	chr7	100172685:100172927:100173327:100173405:100173493:100173631,	100173328	100173405	100173400	100173400	Frame_Shift_Del	T	-	p.K594fs
LIHC	TCGA-DD-A3A0-01	LRCH4	ENST00000497245.1,ENST00000485554.1,ENST00000310300.6	chr7	100173860:100173946:100174316:100174400:100174524:100174566,	100174317	100174400	100174321	100174321	Frame_Shift_Del	G	-	p.G516fs
LIHC	TCGA-DD-A3A0-01	TFR2	ENST00000465294.1,ENST00000462090.1	chr7	100224385:100224526:100224886:100225284:100225366:100225443,	100224887	100225284	100225083	100225083	Frame_Shift_Del	T	-	p.K600fs
LIHC	TCGA-DD-A3A0-01	TFR2	ENST00000544242.1,ENST00000490084.1,ENST00000462107.1,ENST00000431692.1,ENST00000476304.1,ENST00000223051.3	chr7	100224400:100224526:100224886:100225114:100225199:100225284,	100224887	100225114	100225083	100225083	Frame_Shift_Del	T	-	p.K600fs
LIHC	TCGA-DD-A3A0-01	GIGYF1	ENST00000275732.5	chr7	100282460:100282517:100282671:100282769:100282966:100283104,	100282672	100282769	100282756	100282756	Frame_Shift_Del	C	-	p.G402fs
LIHC	TCGA-DD-A3A0-01	SLC12A9	ENST00000462106.1,ENST00000540482.1,ENST00000354161.3,ENST00000428758.1	chr7	100450398:100450461:100451777:100452000:100454489:100454798,100450398:100450461:100451777:100452000:100456456:100456564,100450374:100450457:100451777:100452000:100454489:100454798,100450374:100450457:100451777:100452000:100452241:100452376,	100451778	100452000	100451986	100451986	Frame_Shift_Del	T	-	p.V56fs
LIHC	TCGA-DD-A3A0-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459447	100459447	Frame_Shift_Del	G	-	p.R542fs
LIHC	TCGA-DD-A3A0-01	TRIP6	ENST00000417475.1,ENST00000476870.1	chr7	100465015:100465228:100465532:100465610:100465729:100465855,	100465533	100465610	100465580	100465580	Frame_Shift_Del	G	-	p.V69fs
LIHC	TCGA-DD-A3A0-01	TRIP6	ENST00000437505.1	chr7	100465015:100465228:100465729:100465855:100466116:100466488,	100465730	100465855	100465746	100465746	Frame_Shift_Del	G	-	p.R85fs
LIHC	TCGA-DD-A3A0-01	TRIP6	ENST00000417475.1,ENST00000437505.1,ENST00000200457.4,ENST00000476870.1	chr7	100465742:100465855:100466116:100466488:100467991:100468085,	100466117	100466488	100466483	100466483	Frame_Shift_Del	C	-	p.P244fs
LIHC	TCGA-DD-A3A0-01	TRIP6	ENST00000476870.1	chr7	100466432:100466488:100467991:100468365:100469164:100469343,	100467992	100468365	100468234	100468234	Frame_Shift_Del	G	-	p.G290fs
LIHC	TCGA-DD-A3A0-01	TRIP6	ENST00000200457.4	chr7	100467991:100468085:100468195:100468365:100469164:100469343,	100468196	100468365	100468234	100468234	Frame_Shift_Del	G	-	p.G290fs
LIHC	TCGA-DD-A3A0-01	SRRT	ENST00000445337.1	chr7	100485323:100485480:100485662:100485764:100486094:100486277,	100485663	100485764	100485681	100485681	Frame_Shift_Del	C	-	p.T781fs
LIHC	TCGA-DD-A3A0-01	ACHE	ENST00000442452.1	chr7	100488789:100488959:100489954:100490264:100490785:100491525,	100489955	100490264	100490112	100490112	Frame_Shift_Del	A	-	p.S466fs
LIHC	TCGA-DD-A3A0-01	ACHE	ENST00000419336.2	chr7	100488789:100488959:100489954:100490175:100490785:100491525,	100489955	100490175	100490112	100490112	Frame_Shift_Del	A	-	p.S466fs
LIHC	TCGA-DD-A3A0-01	ACHE	ENST00000412389.1,ENST00000241069.5,ENST00000411582.1,ENST00000428317.1,ENST00000302913.4	chr7	100488789:100488959:100489954:100490439:100490785:100491525,	100489955	100490439	100490112	100490112	Frame_Shift_Del	A	-	p.S466fs
LIHC	TCGA-DD-A3A0-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100775155:100775350:100776975:100777174:100778774:100778875,	100776976	100777174	100777016	100777016	Frame_Shift_Del	G	-	p.L247fs
LIHC	TCGA-DD-A3A0-01	MOGAT3	ENST00000223114.4	chr7	100839177:100839381:100839467:100839670:100841471:100841646,	100839468	100839670	100839639	100839639	Frame_Shift_Del	C	-	p.E234fs
LIHC	TCGA-DD-A3A0-01	MOGAT3	ENST00000440203.2,ENST00000223114.4	chr7	100839177:100839381:100841471:100841646:100841906:100842111,100839467:100839670:100841471:100841646:100841906:100842111,	100841472	100841646	100841562	100841562	Frame_Shift_Del	C	-	p.G193fs
LIHC	TCGA-DD-A3A0-01	MOGAT3	ENST00000440203.2,ENST00000379423.3	chr7	100843514:100843585:100843688:100843796:100844026:100844084,	100843689	100843796	100843782	100843782	Frame_Shift_Del	G	-	p.L43fs
LIHC	TCGA-DD-A3A0-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855927	Frame_Shift_Del	G	-	p.R297fs
LIHC	TCGA-DD-A3A0-01	ZNHIT1	ENST00000461205.1	chr7	100861599:100861766:100865884:100866055:100866757:100866837,	100865885	100866055	100865991	100865991	Frame_Shift_Del	C	-	p.D43fs
LIHC	TCGA-DD-A3A0-01	SH2B2	ENST00000536178.1,ENST00000306803.8,ENST00000444095.1	chr7	101943834:101944563:101950003:101950105:101952096:101952188,	101950004	101950105	101950051	101950051	Frame_Shift_Del	C	-	p.V302fs
LIHC	TCGA-DD-A3A0-01	PRKRIP1	ENST00000397912.3,ENST00000496391.1,ENST00000354783.4	chr7	102016665:102016769:102038066:102038145:102039994:102040095,102036881:102036984:102038066:102038145:102039994:102040095,	102038067	102038145	102038118	102038118	Frame_Shift_Del	C	-	p.P61fs
LIHC	TCGA-DD-A3A0-01	LRWD1	ENST00000463739.1,ENST00000485808.1,ENST00000485417.1,ENST00000292616.5	chr7	102108165:102108270:102108508:102108634:102108709:102108824,	102108509	102108634	102108570	102108570	Frame_Shift_Del	G	-	p.R247fs
LIHC	TCGA-DD-A3A0-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000440067.1,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102667895:102668005:102669046:102669195:102669797:102669865,	102669047	102669195	102669163	102669163	Frame_Shift_Del	T	-	p.N34fs
LIHC	TCGA-DD-A3A0-01	PMPCB	ENST00000453466.1,ENST00000444457.1,ENST00000420236.2,ENST00000428154.1,ENST00000249269.4	chr7	102949398:102949542:102950761:102950922:102952089:102952175,	102950762	102950922	102950824	102950824	Frame_Shift_Del	T	-	p.S352fs
LIHC	TCGA-DD-A3A0-01	DNAJC2	ENST00000475065.1,ENST00000464253.1,ENST00000379263.3	chr7	102960055:102960125:102960202:102960291:102962378:102962528,	102960203	102960291	102960249	102960249	Frame_Shift_Del	T	-	p.M377fs
LIHC	TCGA-DD-A3A0-01	DNAJC2	ENST00000249270.7,ENST00000379263.3	chr7	102962378:102962528:102962957:102963079:102963149:102963241,	102962958	102963079	102963027	102963027	Frame_Shift_Del	T	-	p.K288fs
LIHC	TCGA-DD-A3A0-01	DNAJC2	ENST00000249270.7,ENST00000379263.3	chr7	102962378:102962528:102962957:102963079:102963149:102963241,	102962958	102963079	102963046	102963046	Frame_Shift_Del	T	-	p.K282fs
LIHC	TCGA-DD-A3A0-01	PSMC2	ENST00000544811.1,ENST00000435765.1,ENST00000292644.3	chr7	103004589:103004754:103006522:103006610:103007859:103008062,	103006523	103006610	103006564	103006564	Frame_Shift_Del	A	-	p.T266fs
LIHC	TCGA-DD-A3A0-01	ORC5	ENST00000422497.1,ENST00000485726.1,ENST00000463152.1,ENST00000297431.4,ENST00000545943.1,ENST00000447452.2	chr7	103828698:103828829:103835590:103835702:103838172:103838215,	103835591	103835702	103835657	103835657	Frame_Shift_Del	C	-	p.E31fs
LIHC	TCGA-DD-A3A0-01	ORC5	ENST00000485726.1,ENST00000447452.2	chr7	103841268:103841406:103844589:103844682:103848280:103848405,	103844590	103844682	103844653	103844653	Frame_Shift_Del	A	-	p.F34fs
LIHC	TCGA-DD-A3A0-01	PUS7	ENST00000481939.1,ENST00000356362.2,ENST00000469408.1	chr7	105121498:105121624:105122758:105122887:105131986:105132064,	105122759	105122887	105122810	105122810	Frame_Shift_Del	T	-	p.N333fs
LIHC	TCGA-DD-A3A0-01	ATXN7L1	ENST00000419735.3	chr7	105283284:105283568:105305512:105305735:105429049:105429154,	105305513	105305735	105305649	105305649	Frame_Shift_Del	T	-	p.T148fs
LIHC	TCGA-DD-A3A0-01	CDHR3	ENST00000478080.1,ENST00000317716.9,ENST00000343407.5,ENST00000542731.1	chr7	105621476:105621579:105641907:105642056:105644943:105645042,105636695:105636800:105641907:105642056:105644943:105645042,	105641908	105642056	105641995	105641995	Frame_Shift_Del	T	-	p.G267fs
LIHC	TCGA-DD-A3A0-01	CDHR3	ENST00000488386.1	chr7	105621476:105621579:105641907:105642028:105644943:105645042,	105641908	105642028	105641995	105641995	Frame_Shift_Del	T	-	p.G267fs
LIHC	TCGA-DD-A3A0-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509064	106509064	Frame_Shift_Del	C	-	p.S353fs
LIHC	TCGA-DD-A3A0-01	COG5	ENST00000393603.2,ENST00000464542.1,ENST00000347053.3,ENST00000297135.3	chr7	106871059:106871136:106876894:106877132:106888840:106888944,	106876895	106877132	106876901	106876901	Frame_Shift_Del	A	-	p.F726fs
LIHC	TCGA-DD-A3A0-01	BCAP29	ENST00000379119.2,ENST00000445771.2	chr7	107253777:107253877:107254098:107254177:107258772:107259060,	107254099	107254177	107254138	107254138	Frame_Shift_Del	A	-	p.K244fs
LIHC	TCGA-DD-A3A0-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107569508:107569650:107569856:107570064:107571800:107571945,	107569857	107570064	107570016	107570016	Frame_Shift_Del	A	-	p.L1553fs
LIHC	TCGA-DD-A3A0-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107626466:107626530:107626619:107626808:107635331:107635405,	107626620	107626808	107626764	107626764	Frame_Shift_Del	A	-	p.F180fs
LIHC	TCGA-DD-A3A0-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107635331:107635405:107638801:107638937:107642002:107642178,	107638802	107638937	107638858	107638858	Frame_Shift_Del	T	-	p.N122fs
LIHC	TCGA-DD-A3A0-01	LAMB4	ENST00000205386.4,ENST00000388781.3,ENST00000388780.3,ENST00000422975.1	chr7	107669487:107669641:107671250:107671424:107674652:107674791,	107671251	107671424	107671263	107671263	Frame_Shift_Del	C	-	p.G1660fs
LIHC	TCGA-DD-A3A0-01	LAMB4	ENST00000475572.1,ENST00000205386.4,ENST00000388781.3,ENST00000388780.3,ENST00000422975.1	chr7	107669487:107669641:107674652:107674791:107677832:107677907,107671389:107671424:107674652:107674791:107677832:107677907,	107674653	107674791	107674715	107674715	Frame_Shift_Del	C	-	p.A1586fs
LIHC	TCGA-DD-A3A0-01	LAMB4	ENST00000475572.1,ENST00000205386.4,ENST00000388781.3,ENST00000388780.3,ENST00000422975.1	chr7	107669487:107669641:107674652:107674791:107677832:107677907,107671389:107671424:107674652:107674791:107677832:107677907,	107674653	107674791	107674730	107674730	Frame_Shift_Del	T	-	p.I1581fs
LIHC	TCGA-DD-A3A0-01	PNPLA8	ENST00000257694.8,ENST00000476592.1,ENST00000422087.1,ENST00000388728.5,ENST00000453085.1,ENST00000453144.1,ENST00000436062.1,ENST00000426128.2	chr7	108137926:108138021:108142934:108143086:108154587:108154737,	108142935	108143086	108143048	108143048	Frame_Shift_Del	A	-	p.I415fs
LIHC	TCGA-DD-A3A0-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155242	108155242	Frame_Shift_Del	C	-	p.D232fs
LIHC	TCGA-DD-A3A0-01	PNPLA8	ENST00000453144.1	chr7	108154587:108154737:108154879:108155891:108161919:108161965,108154725:108154737:108154879:108155891:108166472:108166564,	108154880	108155891	108155242	108155242	Frame_Shift_Del	C	-	p.D232fs
LIHC	TCGA-DD-A3A0-01	IMMP2L	ENST00000415362.1,ENST00000331762.3,ENST00000450877.1,ENST00000452895.1,ENST00000405709.2	chr7	110303657:110303777:110526648:110526751:110603555:110603621,	110526649	110526751	110526699	110526699	Frame_Shift_Del	C	-	p.V120fs
LIHC	TCGA-DD-A3A0-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000423057.2,ENST00000437633.1,ENST00000494651.2	chr7	111379451:111379533:111381149:111381270:111381595:111381717,	111381150	111381270	111381234	111381234	Frame_Shift_Del	G	-	p.S1654fs
LIHC	TCGA-DD-A3A0-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000476846.1,ENST00000437633.1,ENST00000468571.1	chr7	111638502:111638558:111640548:111640589:111644102:111644186,	111640549	111640589	111640562	111640562	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-DD-A3A0-01	TMEM168	ENST00000447395.1,ENST00000312814.6,ENST00000454074.1	chr7	112407229:112407799:112412835:112413110:112415230:112415373,	112412836	112413110	112412936	112412936	Frame_Shift_Del	T	-	p.K482fs
LIHC	TCGA-DD-A3A0-01	FOXP2	ENST00000412402.1	chr7	114293980:114294064:114299410:114299487:114299626:114299728,	114299411	114299487	114299455	114299455	Frame_Shift_Del	C	-	p.P531fs
LIHC	TCGA-DD-A3A0-01	MDFIC	ENST00000393486.1,ENST00000257724.3,ENST00000498196.1	chr7	114582329:114582452:114619560:114619836:114655741:114655819,	114619561	114619836	114619729	114619729	Frame_Shift_Del	A	-	p.Q129fs
LIHC	TCGA-DD-A3A0-01	TES	ENST00000358204.4,ENST00000393481.2,ENST00000393484.2	chr7	115890502:115890550:115891813:115892029:115892371:115892530,	115891814	115892029	115892006	115892006	Frame_Shift_Del	C	-	p.P299fs
LIHC	TCGA-DD-A3A0-01	CAV2	ENST00000484871.1,ENST00000222693.4,ENST00000498493.1	chr7	116139894:116139985:116140313:116140501:116146024:116146083,	116140314	116140501	116140387	116140387	Frame_Shift_Del	C	-	p.A75fs
LIHC	TCGA-DD-A3A0-01	CAV2	ENST00000484871.1,ENST00000222693.4,ENST00000498493.1	chr7	116139894:116139985:116140313:116140501:116146024:116146083,	116140314	116140501	116140480	116140480	Frame_Shift_Del	C	-	p.T106fs
LIHC	TCGA-DD-A3A0-01	MET	ENST00000397752.3,ENST00000318493.6	chr7	116312458:116312631:116339124:116340338:116371721:116371913,	116339125	116340338	116339289	116339289	Frame_Shift_Del	C	-	p.P51fs
LIHC	TCGA-DD-A3A0-01	MET	ENST00000397752.3,ENST00000422097.1	chr7	116398570:116398674:116399444:116399544:116403103:116403134,	116399445	116399544	116399473	116399473	Frame_Shift_Del	A	-	p.K765fs
LIHC	TCGA-DD-A3A0-01	MET	ENST00000318493.6	chr7	116398570:116398674:116399390:116399544:116403103:116403134,	116399391	116399544	116399473	116399473	Frame_Shift_Del	A	-	p.K765fs
LIHC	TCGA-DD-A3A0-01	CFTR	ENST00000426809.1,ENST00000003084.6	chr7	117182069:117182162:117188694:117188877:117199517:117199709,	117188695	117188877	117188742	117188742	Frame_Shift_Del	A	-	p.R419fs
LIHC	TCGA-DD-A3A0-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117232235:117232711:117234983:117235112:117242879:117242917,	117234984	117235112	117235072	117235072	Frame_Shift_Del	T	-	p.I860fs
LIHC	TCGA-DD-A3A0-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117250572:117250723:117251634:117251862:117254666:117254767,	117251635	117251862	117251806	117251806	Frame_Shift_Del	A	-	p.E1104fs
LIHC	TCGA-DD-A3A0-01	CTTNBP2	ENST00000446636.1,ENST00000160373.3,ENST00000441556.1	chr7	117417564:117417819:117420494:117420645:117422915:117423015,	117420495	117420645	117420559	117420559	Frame_Shift_Del	T	-	p.N820fs
LIHC	TCGA-DD-A3A0-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121568209:121568275:121608004:121608184:121612594:121612746,	121608005	121608184	121608139	121608139	Frame_Shift_Del	A	-	p.K87fs
LIHC	TCGA-DD-A3A0-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000462699.1,ENST00000334010.7,ENST00000449022.2	chr7	121985627:121985735:122000841:122000874:122000983:122001067,	122000842	122000874	122000869	122000869	Frame_Shift_Del	T	-	p.K1157fs
LIHC	TCGA-DD-A3A0-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000334010.7,ENST00000449022.2	chr7	122081565:122081629:122091427:122091529:122111428:122111616,	122091428	122091529	122091472	122091472	Frame_Shift_Del	T	-	p.K749fs
LIHC	TCGA-DD-A3A0-01	CADPS2	ENST00000412584.2,ENST00000313070.7,ENST00000334010.7,ENST00000449022.2	chr7	122261534:122261771:122269301:122269382:122303290:122303623,	122269302	122269382	122269310	122269310	Frame_Shift_Del	T	-	p.M287fs
LIHC	TCGA-DD-A3A0-01	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000434450.1,ENST00000324698.6	chr7	123104886:123105063:123109267:123109438:123119848:123120024,	123109268	123109438	123109350	123109350	Frame_Shift_Del	T	-	p.N500fs
LIHC	TCGA-DD-A3A0-01	SND1	ENST00000461056.1,ENST00000468621.1,ENST00000354725.3	chr7	127326666:127326816:127334881:127335002:127338928:127338991,	127334882	127335002	127334963	127334963	Frame_Shift_Del	C	-	p.P104fs
LIHC	TCGA-DD-A3A0-01	RBM28	ENST00000223073.2,ENST00000487602.1,ENST00000415472.2	chr7	127970871:127970981:127973343:127973416:127975596:127975733,	127973344	127973416	127973361	127973361	Frame_Shift_Del	C	-	p.G334fs
LIHC	TCGA-DD-A3A0-01	RBM28	ENST00000223073.2	chr7	127977184:127977256:127978303:127978396:127978779:127978855,	127978304	127978396	127978371	127978371	Frame_Shift_Del	A	-	p.F158fs
LIHC	TCGA-DD-A3A0-01	IMPDH1	ENST00000480861.1	chr7	128040386:128040593:128040885:128040945:128041068:128041170,	128040886	128040945	128040922	128040922	Frame_Shift_Del	A	-	p.I176fs
LIHC	TCGA-DD-A3A0-01	IMPDH1	ENST00000348127.6,ENST00000378717.4,ENST00000338791.6,ENST00000497868.1,ENST00000419067.2,ENST00000354269.5	chr7	128040386:128040593:128040870:128040945:128041068:128041170,	128040871	128040945	128040922	128040922	Frame_Shift_Del	A	-	p.I176fs
LIHC	TCGA-DD-A3A0-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138133	128138133	Frame_Shift_Del	G	-	p.G221fs
LIHC	TCGA-DD-A3A0-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138190	128138190	Frame_Shift_Del	A	-	p.K240fs
LIHC	TCGA-DD-A3A0-01	FAM71F2	ENST00000474069.1,ENST00000434001.2,ENST00000378704.3,ENST00000480462.1	chr7	128315701:128315913:128317617:128317867:128320084:128320203,	128317618	128317867	128317624	128317624	Frame_Shift_Del	C	-	p.L124fs
LIHC	TCGA-DD-A3A0-01	CCDC136	ENST00000297788.4	chr7	128454702:128454973:128455667:128455985:128457811:128457918,	128455668	128455985	128455759	128455759	Frame_Shift_Del	A	-	p.E1046fs
LIHC	TCGA-DD-A3A0-01	TNPO3	ENST00000482320.1,ENST00000471166.1,ENST00000393245.1,ENST00000265388.5	chr7	128624221:128624313:128626782:128626974:128630014:128630154,	128626783	128626974	128626837	128626837	Frame_Shift_Del	G	-	p.R580fs
LIHC	TCGA-DD-A3A0-01	STRIP2	ENST00000249344.2	chr7	129120629:129120730:129122682:129122887:129125419:129128240,	129122683	129122887	129122884	129122884	Frame_Shift_Del	A	-	p.N751fs
LIHC	TCGA-DD-A3A0-01	KLHDC10	ENST00000335420.5	chr7	129761893:129762042:129764290:129764375:129765704:129765771,	129764291	129764375	129764336	129764336	Frame_Shift_Del	G	-	p.L275fs
LIHC	TCGA-DD-A3A0-01	MEST	ENST00000462132.1	chr7	130137006:130137076:130137776:130137854:130137979:130138020,130137006:130137076:130137776:130137854:130138009:130138116,	130137777	130137854	130137834	130137834	Frame_Shift_Del	T	-	p.F107fs
LIHC	TCGA-DD-A3A0-01	MKLN1	ENST00000352689.6,ENST00000494785.1,ENST00000458153.1,ENST00000421797.2	chr7	131122543:131122756:131128239:131128461:131130532:131130662,	131128240	131128461	131128289	131128289	Frame_Shift_Del	T	-	p.I408fs
LIHC	TCGA-DD-A3A0-01	PODXL	ENST00000537928.1,ENST00000446198.1,ENST00000378555.3,ENST00000490761.1,ENST00000541194.1,ENST00000322985.9,ENST00000487965.1	chr7	131190647:131190794:131191018:131191080:131191337:131191485,	131191019	131191080	131191071	131191071	Frame_Shift_Del	G	-	p.P422fs
LIHC	TCGA-DD-A3A0-01	CHCHD3	ENST00000448878.1,ENST00000496427.1,ENST00000262570.5,ENST00000476546.1	chr7	132470285:132470421:132481202:132481338:132523158:132523229,	132481203	132481338	132481235	132481235	Frame_Shift_Del	G	-	p.Q210fs
LIHC	TCGA-DD-A3A0-01	AKR1B10	ENST00000359579.4	chr7	134216659:134216776:134217755:134217833:134221401:134221524,	134217756	134217833	134217769	134217769	Frame_Shift_Del	T	-	p.L122fs
LIHC	TCGA-DD-A3A0-01	CALD1	ENST00000436461.2,ENST00000443197.1,ENST00000543443.1,ENST00000424922.1,ENST00000417172.1,ENST00000482470.1,ENST00000361901.2	chr7	134613504:134613651:134617738:134618141:134625842:134625988,	134617739	134618141	134618032	134618032	Frame_Shift_Del	C	-	p.S171fs
LIHC	TCGA-DD-A3A0-01	CALD1	ENST00000436461.2,ENST00000443197.1,ENST00000543443.1,ENST00000424922.1,ENST00000417172.1,ENST00000482470.1,ENST00000361901.2	chr7	134613504:134613651:134617738:134618141:134625842:134625988,	134617739	134618141	134618053	134618053	Frame_Shift_Del	G	-	p.R178fs
LIHC	TCGA-DD-A3A0-01	NUP205	ENST00000440390.2,ENST00000285968.6	chr7	135262543:135262772:135263498:135263663:135269579:135269755,	135263499	135263663	135263529	135263529	Frame_Shift_Del	A	-	p.E303fs
LIHC	TCGA-DD-A3A0-01	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135286117:135286255:135287552:135287742:135289087:135289208,	135287553	135287742	135287625	135287625	Frame_Shift_Del	T	-	p.L862fs
LIHC	TCGA-DD-A3A0-01	MTPN	ENST00000393085.3	chr7	135614206:135614760:135635346:135635430:135636264:135636378,	135635347	135635430	135635362	135635362	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-DD-A3A0-01	MTPN	ENST00000393085.3	chr7	135614206:135614760:135635346:135635430:135636264:135636378,	135635347	135635430	135635373	135635373	Frame_Shift_Del	A	-	p.S82fs
LIHC	TCGA-DD-A3A0-01	AKR1D1	ENST00000411726.2,ENST00000432161.1,ENST00000242375.3	chr7	137773346:137773514:137776513:137776630:137782611:137782689,	137776514	137776630	137776599	137776599	Frame_Shift_Del	T	-	p.L116fs
LIHC	TCGA-DD-A3A0-01	TRIM24	ENST00000343526.4,ENST00000497516.1,ENST00000415680.2	chr7	138209985:138210102:138213860:138213975:138223401:138223548,	138213861	138213975	138213878	138213878	Frame_Shift_Del	A	-	p.Q300fs
LIHC	TCGA-DD-A3A0-01	TRIM24	ENST00000343526.4	chr7	138235807:138235925:138239442:138239711:138252225:138252399,	138239443	138239711	138239692	138239692	Frame_Shift_Del	A	-	p.Q504fs
LIHC	TCGA-DD-A3A0-01	TRIM24	ENST00000343526.4,ENST00000415680.2	chr7	138255574:138255748:138258251:138258387:138261117:138261190,	138258252	138258387	138258356	138258356	Frame_Shift_Del	A	-	p.P661fs
LIHC	TCGA-DD-A3A0-01	SVOPL	ENST00000419765.3	chr7	138344608:138344733:138347818:138347890:138356763:138356862,	138347819	138347890	138347879	138347879	Frame_Shift_Del	A	-	p.F95fs
LIHC	TCGA-DD-A3A0-01	ATP6V0A4	ENST00000353492.4,ENST00000393054.1,ENST00000310018.2	chr7	138391270:138391462:138394368:138394540:138400508:138400626,	138394369	138394540	138394452	138394452	Frame_Shift_Del	A	-	p.F782fs
LIHC	TCGA-DD-A3A0-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138602140	138602140	Frame_Shift_Del	A	-	p.F744fs
LIHC	TCGA-DD-A3A0-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138602642	138602642	Frame_Shift_Del	T	-	p.N577fs
LIHC	TCGA-DD-A3A0-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603052	138603052	Frame_Shift_Del	T	-	p.K440fs
LIHC	TCGA-DD-A3A0-01	ZC3HAV1	ENST00000464606.1,ENST00000460845.1,ENST00000471652.1,ENST00000242351.5	chr7	138758601:138758776:138761031:138761155:138763297:138763399,	138761032	138761155	138761142	138761142	Frame_Shift_Del	T	-	p.K529fs
LIHC	TCGA-DD-A3A0-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764616	138764616	Frame_Shift_Del	G	-	p.P357fs
LIHC	TCGA-DD-A3A0-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764616	138764616	Frame_Shift_Del	G	-	p.P357fs
LIHC	TCGA-DD-A3A0-01	PARP12	ENST00000473341.1	chr7	139756655:139756953:139757698:139757834:139762321:139762351,	139757699	139757834	139757714	139757714	Frame_Shift_Del	G	-	p.P149fs
LIHC	TCGA-DD-A3A0-01	SLC37A3	ENST00000485734.1	chr7	140045015:140045063:140045668:140045770:140048425:140048486,140037083:140037149:140045668:140045770:140048425:140048486,	140045669	140045770	140045765	140045765	Frame_Shift_Del	T	-	p.T344fs
LIHC	TCGA-DD-A3A0-01	WEE2	ENST00000397541.2	chr7	141423989:141424075:141424825:141424996:141427103:141427167,	141424826	141424996	141424864	141424864	Frame_Shift_Del	G	-	p.L420fs
LIHC	TCGA-DD-A3A0-01	CLEC5A	ENST00000546910.1	chr7	141635613:141635750:141643695:141643764:141645140:141645200,	141643696	141643764	141643751	141643751	Frame_Shift_Del	A	-	p.F51fs
LIHC	TCGA-DD-A3A0-01	EPHB6	ENST00000411471.2,ENST00000422643.1,ENST00000425995.1,ENST00000442129.1,ENST00000392957.2	chr7	142563229:142563385:142563714:142564071:142564235:142564360,	142563715	142564071	142563729	142563729	Frame_Shift_Del	C	-	p.P373fs
LIHC	TCGA-DD-A3A0-01	EPHB6	ENST00000411471.2,ENST00000422643.1,ENST00000425995.1,ENST00000442129.1,ENST00000392957.2	chr7	142563229:142563385:142563714:142564071:142564235:142564360,	142563715	142564071	142563873	142563873	Frame_Shift_Del	G	-	p.G422fs
LIHC	TCGA-DD-A3A0-01	TMEM139	ENST00000409244.1,ENST00000359333.3	chr7	142982046:142982067:142983033:142983295:142983516:142983549,142982646:142982733:142983033:142983295:142983516:142983549,142982440:142982538:142983033:142983295:142983516:142983549,	142983034	142983295	142983257	142983257	Frame_Shift_Del	A	-	p.S69fs
LIHC	TCGA-DD-A3A0-01	CLCN1	ENST00000343257.2	chr7	143042613:143042855:143043232:143043344:143043671:143043751,	143043233	143043344	143043270	143043270	Frame_Shift_Del	C	-	p.A737fs
LIHC	TCGA-DD-A3A0-01	CLCN1	ENST00000343257.2	chr7	143042613:143042855:143043232:143043344:143043671:143043751,	143043233	143043344	143043279	143043279	Frame_Shift_Del	C	-	p.S740fs
LIHC	TCGA-DD-A3A0-01	ZYX	ENST00000449423.2,ENST00000354434.4	chr7	143079340:143079540:143079893:143080415:143085311:143085432,	143079894	143080415	143080273	143080273	Frame_Shift_Del	A	-	p.Q294fs
LIHC	TCGA-DD-A3A0-01	TPK1	ENST00000547966.1,ENST00000378098.4,ENST00000360057.3	chr7	144150520:144150756:144245583:144245695:144320258:144320354,144150520:144150756:144245583:144245695:144288515:144288662,	144245584	144245695	144245612	144245612	Frame_Shift_Del	A	-	p.V78fs
LIHC	TCGA-DD-A3A0-01	TPK1	ENST00000547966.1,ENST00000552881.1,ENST00000360057.3	chr7	144288516:144288662:144320258:144320354:144345899:144345972,	144320259	144320354	144320268	144320268	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-DD-A3A0-01	CUL1	ENST00000325222.4,ENST00000409469.1,ENST00000602748.1	chr7	148456639:148456730:148457424:148457588:148463652:148463815,	148457425	148457588	148457583	148457583	Frame_Shift_Del	A	-	p.K263fs
LIHC	TCGA-DD-A3A0-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000320356.2,ENST00000541220.1,ENST00000483967.1	chr7	148513775:148513870:148514313:148514483:148514968:148515209,	148514314	148514483	148514463	148514463	Frame_Shift_Del	T	-	p.T421fs
LIHC	TCGA-DD-A3A0-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000492143.1,ENST00000536783.1,ENST00000541220.1,ENST00000483012.1,ENST00000483967.1,ENST00000498186.1	chr7	148516687:148516779:148523560:148523724:148524255:148524358,	148523561	148523724	148523583	148523583	Frame_Shift_Del	A	-	p.F290fs
LIHC	TCGA-DD-A3A0-01	EZH2	ENST00000320356.2	chr7	148516687:148516779:148523545:148523724:148524255:148524358,	148523546	148523724	148523583	148523583	Frame_Shift_Del	A	-	p.F290fs
LIHC	TCGA-DD-A3A0-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000492143.1,ENST00000536783.1,ENST00000541220.1,ENST00000483012.1,ENST00000483967.1,ENST00000498186.1	chr7	148516687:148516779:148523560:148523724:148524255:148524358,	148523561	148523724	148523667	148523667	Frame_Shift_Del	G	-	p.P262fs
LIHC	TCGA-DD-A3A0-01	EZH2	ENST00000320356.2	chr7	148516687:148516779:148523545:148523724:148524255:148524358,	148523546	148523724	148523667	148523667	Frame_Shift_Del	G	-	p.P262fs
LIHC	TCGA-DD-A3A0-01	EZH2	ENST00000460911.1,ENST00000350995.2,ENST00000320356.2,ENST00000536783.1,ENST00000541220.1,ENST00000483012.1,ENST00000483967.1,ENST00000498186.1	chr7	148543588:148543690:148544273:148544397:148581255:148581337,	148544274	148544397	148544331	148544331	Frame_Shift_Del	T	-	p.K20fs
LIHC	TCGA-DD-A3A0-01	PDIA4	ENST00000286091.4,ENST00000466592.1	chr7	148701290:148701301:148702232:148702466:148702988:148703145,	148702233	148702466	148702263	148702263	Frame_Shift_Del	G	-	p.L498fs
LIHC	TCGA-DD-A3A0-01	PDIA4	ENST00000286091.4,ENST00000466592.1	chr7	148701290:148701301:148702232:148702466:148702988:148703145,	148702233	148702466	148702455	148702455	Frame_Shift_Del	A	-	p.W434fs
LIHC	TCGA-DD-A3A0-01	ZNF398	ENST00000420008.2,ENST00000426851.2,ENST00000491174.1,ENST00000540950.1,ENST00000475153.1,ENST00000335901.4	chr7	148851036:148851432:148863249:148863376:148863908:148864022,	148863250	148863376	148863302	148863302	Frame_Shift_Del	A	-	p.E158fs
LIHC	TCGA-DD-A3A0-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149558409	149558409	Frame_Shift_Del	G	-	p.L720fs
LIHC	TCGA-DD-A3A0-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149558509	149558509	Frame_Shift_Del	T	-	p.F754fs
LIHC	TCGA-DD-A3A0-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559277	149559277	Frame_Shift_Del	A	-	p.K1010fs
LIHC	TCGA-DD-A3A0-01	TMEM176A	ENST00000475007.1,ENST00000475536.1	chr7	150500707:150500920:150501449:150501573:150501914:150502024,	150501450	150501573	150501516	150501516	Frame_Shift_Del	A	-	p.T208fs
LIHC	TCGA-DD-A3A0-01	TMEM176A	ENST00000004103.3,ENST00000461345.1,ENST00000484928.1,ENST00000494349.1	chr7	150500707:150500920:150501449:150501560:150501914:150502024,	150501450	150501560	150501516	150501516	Frame_Shift_Del	A	-	p.T208fs
LIHC	TCGA-DD-A3A0-01	AOC1	ENST00000416793.2,ENST00000360937.4	chr7	150549606:150549646:150553542:150555128:150555850:150556136,	150553543	150555128	150554168	150554168	Frame_Shift_Del	C	-	p.Q204fs
LIHC	TCGA-DD-A3A0-01	AOC1	ENST00000416793.2,ENST00000360937.4	chr7	150549606:150549646:150553542:150555128:150555850:150556136,	150553543	150555128	150554197	150554197	Frame_Shift_Del	C	-	p.H213fs
LIHC	TCGA-DD-A3A0-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730775	150730775	Frame_Shift_Del	C	-	p.A60fs
LIHC	TCGA-DD-A3A0-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730819	150730819	Frame_Shift_Del	G	-	p.G76fs
LIHC	TCGA-DD-A3A0-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730836	150730836	Frame_Shift_Del	C	-	p.G80fs
LIHC	TCGA-DD-A3A0-01	CDK5	ENST00000297518.4	chr7	150752385:150752460:150752618:150752693:150753666:150753723,	150752619	150752693	150752667	150752667	Frame_Shift_Del	A	-	p.F145fs
LIHC	TCGA-DD-A3A0-01	FASTK	ENST00000482806.1,ENST00000482571.1,ENST00000483953.1,ENST00000489884.1,ENST00000297532.6,ENST00000353841.2	chr7	150774396:150774488:150774707:150774867:150774965:150775179,	150774708	150774867	150774781	150774781	Frame_Shift_Del	G	-	p.R376fs
LIHC	TCGA-DD-A3A0-01	FASTK	ENST00000482571.1	chr7	150775648:150775788:150776009:150776108:150776586:150777009,	150776010	150776108	150776019	150776019	Frame_Shift_Del	G	-	p.L200fs
LIHC	TCGA-DD-A3A0-01	FASTK	ENST00000482806.1,ENST00000297532.6	chr7	150775648:150775788:150775928:150776108:150777771:150777877,150775648:150775788:150775928:150776108:150776586:150777009,	150775929	150776108	150776019	150776019	Frame_Shift_Del	G	-	p.L200fs
LIHC	TCGA-DD-A3A0-01	AGAP3	ENST00000335367.3,ENST00000473312.1	chr7	150815591:150815719:150817073:150817232:150820880:150820937,150815591:150815719:150817073:150817232:150819811:150819880,	150817074	150817232	150817121	150817121	Frame_Shift_Del	C	-	p.V339fs
LIHC	TCGA-DD-A3A0-01	ABCF2	ENST00000287844.2,ENST00000222388.2,ENST00000473874.1	chr7	150915839:150915959:150916149:150916245:150918663:150918766,	150916150	150916245	150916176	150916176	Frame_Shift_Del	C	-	p.E331fs
LIHC	TCGA-DD-A3A0-01	PRKAG2	ENST00000491938.1,ENST00000476632.1,ENST00000488258.1,ENST00000493872.1,ENST00000392801.2,ENST00000418337.2,ENST00000492843.1,ENST00000433631.2,ENST00000287878.4	chr7	151271976:151272035:151273456:151273538:151292430:151292537,	151273457	151273538	151273466	151273466	Frame_Shift_Del	T	-	p.S313fs
LIHC	TCGA-DD-A3A0-01	PRKAG2	ENST00000488258.1	chr7	151292430:151292540:151372505:151372723:151478237:151478517,	151372506	151372723	151372597	151372597	Frame_Shift_Del	G	-	p.P198fs
LIHC	TCGA-DD-A3A0-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151877795:151879679:151880058:151880241:151882642:151882716,	151880059	151880241	151880068	151880068	Frame_Shift_Del	T	-	p.K1752fs
LIHC	TCGA-DD-A3A0-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151877795:151879679:151880058:151880241:151882642:151882716,	151880059	151880241	151880116	151880116	Frame_Shift_Del	A	-	p.F1736fs
LIHC	TCGA-DD-A3A0-01	PAXIP1	ENST00000473219.1,ENST00000464717.1,ENST00000404141.1,ENST00000397192.1,ENST00000457196.1	chr7	154747238:154747341:154748933:154749004:154751599:154751643,	154748934	154749004	154748978	154748978	Frame_Shift_Del	T	-	p.K835fs
LIHC	TCGA-DD-A3A0-01	PAXIP1	ENST00000473219.1,ENST00000404141.1,ENST00000475066.1,ENST00000397192.1,ENST00000457196.1	chr7	154760758:154760836:154767405:154768041:154774928:154775042,	154767406	154768041	154767673	154767673	Frame_Shift_Del	G	-	p.A269fs
LIHC	TCGA-DD-A3A0-01	RBM33	ENST00000440108.1	chr7	155493584:155493638:155499553:155499762:155503896:155504149,155493584:155493638:155499553:155499762:155503866:155504149,	155499554	155499762	155499647	155499647	Frame_Shift_Del	G	-	p.R279fs
LIHC	TCGA-DD-A3A0-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556524	155556524	Frame_Shift_Del	T	-	p.F1001fs
LIHC	TCGA-DD-A3A0-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556524	155556524	Frame_Shift_Del	T	-	p.F1001fs
LIHC	TCGA-DD-A3A0-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556609	155556609	Frame_Shift_Del	G	-	p.R1028fs
LIHC	TCGA-DD-A3A0-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556609	155556609	Frame_Shift_Del	G	-	p.R1028fs
LIHC	TCGA-DD-A3A0-01	LMBR1	ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156476253:156476857:156480723:156480885:156516805:156516872,	156480724	156480885	156480735	156480735	Frame_Shift_Del	A	-	p.F459fs
LIHC	TCGA-DD-A3A0-01	PTPRN2	ENST00000409483.1	chr7	158109510:158109624:158282426:158282477:158380249:158380371,157997862:157997965:158282426:158282477:158380249:158380371,	158282427	158282477	158282429	158282429	Frame_Shift_Del	T	-	p.N54fs
LIHC	TCGA-DD-A3A0-01	NCAPG2	ENST00000449727.2,ENST00000409423.1,ENST00000409339.3,ENST00000467785.1,ENST00000356309.3,ENST00000432615.1	chr7	158439151:158439255:158443523:158443664:158444984:158445101,	158443524	158443664	158443535	158443535	Frame_Shift_Del	G	-	p.Q1022fs
LIHC	TCGA-DD-A3A0-01	NCAPG2	ENST00000541468.1,ENST00000275830.10,ENST00000441982.1	chr7	158439151:158439255:158444984:158445172:158447286:158447386,	158444985	158445172	158445038	158445038	Frame_Shift_Del	T	-	p.M961fs
LIHC	TCGA-DD-A3A0-01	NCAPG2	ENST00000541468.1,ENST00000449727.2,ENST00000409423.1,ENST00000275830.10,ENST00000409339.3,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3,ENST00000432615.1	chr7	158451029:158451100:158454885:158455059:158456875:158456988,	158454886	158455059	158454895	158454895	Frame_Shift_Del	T	-	p.K660fs
LIHC	TCGA-DD-A3A0-01	ESYT2	ENST00000251527.5,ENST00000435514.2,ENST00000275418.7	chr7	158531713:158531812:158534213:158534587:158536219:158536369,	158534214	158534587	158534418	158534418	Frame_Shift_Del	C	-	p.G682fs
LIHC	TCGA-DD-A3A0-01	WDR60	ENST00000444851.1,ENST00000407559.3	chr7	158695066:158695286:158698679:158698782:158704240:158704370,	158698680	158698782	158698719	158698719	Frame_Shift_Del	T	-	p.I466fs
LIHC	TCGA-DD-A3A0-01	WDR60	ENST00000467220.1,ENST00000444851.1,ENST00000407559.3,ENST00000454771.1	chr7	158726887:158726919:158727108:158727240:158734615:158734839,	158727109	158727240	158727210	158727210	Frame_Shift_Del	T	-	p.D916fs
LIHC	TCGA-DD-A3A0-01	FBXO25	ENST00000382824.1,ENST00000350302.3,ENST00000352684.2,ENST00000276326.5	chr8	401268:401453:408368:408551:413006:413150,	408369	408551	408475	408475	Frame_Shift_Del	C	-	p.T189fs
LIHC	TCGA-DD-A3A0-01	CLN8	ENST00000331222.4	chr8	1711927:1712051:1719097:1719763:1728415:1728932,	1719098	1719763	1719258	1719258	Frame_Shift_Del	T	-	p.I13fs
LIHC	TCGA-DD-A3A0-01	ARHGEF10	ENST00000520359.1,ENST00000518288.1,ENST00000398560.1,ENST00000398564.1,ENST00000520972.1,ENST00000349830.3,ENST00000262112.6	chr8	1814691:1814768:1817359:1817416:1824736:1824900,	1817360	1817416	1817396	1817396	Frame_Shift_Del	A	-	p.E245fs
LIHC	TCGA-DD-A3A0-01	ANGPT2	ENST00000325203.5,ENST00000338312.6,ENST00000415216.1	chr8	6360600:6360782:6366452:6366583:6371198:6371365,	6366453	6366583	6366546	6366546	Frame_Shift_Del	T	-	p.I413fs
LIHC	TCGA-DD-A3A0-01	FDFT1	ENST00000530664.1,ENST00000528643.1,ENST00000525777.1,ENST00000525954.1,ENST00000525900.1,ENST00000531249.2,ENST00000525607.1,ENST00000538689.1,ENST00000528812.1,ENST00000220584.4,ENST00000529464.1,ENST00000525283.1	chr8	11667300:11667359:11679258:11679387:11683532:11683605,	11679259	11679387	11679346	11679346	Frame_Shift_Del	T	-	p.F157fs
LIHC	TCGA-DD-A3A0-01	LONRF1	ENST00000524526.2,ENST00000533751.1,ENST00000398246.3,ENST00000526610.1,ENST00000526680.1	chr8	12586682:12586841:12589244:12589366:12592794:12592909,	12589245	12589366	12589276	12589276	Frame_Shift_Del	T	-	p.I553fs
LIHC	TCGA-DD-A3A0-01	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943798:12943972:12945995:12946213:12947760:12947979,	12945996	12946213	12945999	12945999	Frame_Shift_Del	A	-	p.L1430fs
LIHC	TCGA-DD-A3A0-01	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943798:12943972:12945995:12946213:12947760:12947979,	12945996	12946213	12946063	12946063	Frame_Shift_Del	T	-	p.T1409fs
LIHC	TCGA-DD-A3A0-01	PDGFRL	ENST00000398074.3,ENST00000541323.1,ENST00000251630.6	chr8	17478559:17478711:17485995:17486289:17491582:17491722,	17485996	17486289	17486181	17486181	Frame_Shift_Del	T	-	p.F231fs
LIHC	TCGA-DD-A3A0-01	MTUS1	ENST00000520196.1,ENST00000519263.1,ENST00000544260.1,ENST00000522149.1,ENST00000517721.1,ENST00000381869.3,ENST00000262102.6,ENST00000524044.1,ENST00000518138.1,ENST00000381861.3,ENST00000521882.1	chr8	17541983:17542051:17570722:17570761:17573275:17573410,	17570723	17570761	17570746	17570746	Frame_Shift_Del	T	-	p.N813fs
LIHC	TCGA-DD-A3A0-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19297387:19297442:19315936:19316153:19362711:19363641,	19315937	19316153	19315974	19315974	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-DD-A3A0-01	HR	ENST00000381418.4,ENST00000518461.1,ENST00000312841.8	chr8	21978577:21978741:21979125:21979207:21980302:21980364,21978577:21978741:21979125:21979207:21980005:21980121,	21979126	21979207	21979189	21979189	Frame_Shift_Del	T	-	p.T714fs
LIHC	TCGA-DD-A3A0-01	HR	ENST00000381418.4,ENST00000312841.8	chr8	21979125:21979207:21980005:21980121:21980302:21980364,	21980006	21980121	21980024	21980024	Frame_Shift_Del	G	-	p.P701fs
LIHC	TCGA-DD-A3A0-01	TNFRSF10A	ENST00000221132.3	chr8	23049326:23049526:23054644:23054717:23056778:23056961,	23054645	23054717	23054706	23054706	Frame_Shift_Del	T	-	p.E342fs
LIHC	TCGA-DD-A3A0-01	CHMP7	ENST00000397677.1,ENST00000313219.7	chr8	23104154:23104337:23106722:23106894:23112759:23112878,23104178:23104507:23106722:23106894:23112759:23112878,	23106723	23106894	23106785	23106785	Frame_Shift_Del	G	-	p.W121fs
LIHC	TCGA-DD-A3A0-01	R3HCC1	ENST00000522012.1	chr8	23147378:23147732:23147847:23147982:23148873:23148981,	23147848	23147982	23147851	23147851	Frame_Shift_Del	G	-	p.D54fs
LIHC	TCGA-DD-A3A0-01	R3HCC1	ENST00000522012.1	chr8	23147378:23147732:23147847:23147982:23148873:23148981,	23147848	23147982	23147862	23147862	Frame_Shift_Del	G	-	p.K57fs
LIHC	TCGA-DD-A3A0-01	LOXL2	ENST00000389131.3	chr8	23160794:23160910:23167180:23167424:23174461:23174627,	23167181	23167424	23167360	23167360	Frame_Shift_Del	G	-	p.P567fs
LIHC	TCGA-DD-A3A0-01	LOXL2	ENST00000389131.3	chr8	23174461:23174627:23177397:23177565:23179642:23179794,	23177398	23177565	23177485	23177485	Frame_Shift_Del	C	-	p.G461fs
LIHC	TCGA-DD-A3A0-01	ADAM28	ENST00000397649.3,ENST00000437154.2,ENST00000520448.1,ENST00000265769.4	chr8	24168873:24168950:24170900:24171093:24177748:24177815,	24170901	24171093	24170994	24170994	Frame_Shift_Del	C	-	p.N159fs
LIHC	TCGA-DD-A3A0-01	KCTD9	ENST00000518997.1,ENST00000521458.1	chr8	25298139:25298189:25303644:25303766:25315714:25315796,25301807:25301851:25303644:25303766:25315714:25315796,	25303645	25303766	25303735	25303735	Frame_Shift_Del	A	-	p.L28fs
LIHC	TCGA-DD-A3A0-01	KCTD9	ENST00000519665.1	chr8	25298092:25298189:25303595:25303766:25315714:25315796,	25303596	25303766	25303735	25303735	Frame_Shift_Del	A	-	p.L28fs
LIHC	TCGA-DD-A3A0-01	STMN4	ENST00000265770.7,ENST00000350889.4	chr8	27093991:27094422:27097487:27097679:27098570:27098776,	27097488	27097679	27097612	27097612	Frame_Shift_Del	T	-	p.K156fs
LIHC	TCGA-DD-A3A0-01	CHRNA2	ENST00000523695.1	chr8	27319119:27319271:27320495:27321377:27324745:27324855,	27320496	27321377	27321201	27321201	Frame_Shift_Del	G	-	p.P253fs
LIHC	TCGA-DD-A3A0-01	CHRNA2	ENST00000520933.2,ENST00000407991.1,ENST00000240132.2,ENST00000523529.1	chr8	27319119:27319271:27320495:27321510:27324745:27324855,	27320496	27321510	27321201	27321201	Frame_Shift_Del	G	-	p.P253fs
LIHC	TCGA-DD-A3A0-01	CHRNA2	ENST00000520933.2,ENST00000407991.1,ENST00000240132.2,ENST00000523529.1	chr8	27319119:27319271:27320495:27321510:27324745:27324855,	27320496	27321510	27321433	27321433	Frame_Shift_Del	G	-	p.P176fs
LIHC	TCGA-DD-A3A0-01	FBXO16	ENST00000380254.2,ENST00000517673.1	chr8	28331288:28331324:28340864:28340979:28347702:28347741,	28340865	28340979	28340921	28340921	Frame_Shift_Del	T	-	p.M15fs
LIHC	TCGA-DD-A3A0-01	FBXO16	ENST00000380254.2,ENST00000517673.1	chr8	28331288:28331324:28340864:28340979:28347702:28347741,	28340865	28340979	28340938	28340938	Frame_Shift_Del	T	-	p.N9fs
LIHC	TCGA-DD-A3A0-01	NRG1	ENST00000338921.4,ENST00000287842.3,ENST00000405005.3,ENST00000356819.4,ENST00000521670.1,ENST00000287845.5,ENST00000341377.5,ENST00000523079.1	chr8	32406244:32406344:32453345:32453523:32463079:32463201,	32453346	32453523	32453496	32453496	Frame_Shift_Del	A	-	p.Q84fs
LIHC	TCGA-DD-A3A0-01	TTI2	ENST00000431156.2	chr8	33367263:33367450:33369484:33370230:33370599:33370637,	33369485	33370230	33369545	33369545	Frame_Shift_Del	T	-	p.N196fs
LIHC	TCGA-DD-A3A0-01	TTI2	ENST00000431156.2	chr8	33367263:33367450:33369484:33370230:33370599:33370637,	33369485	33370230	33369673	33369673	Frame_Shift_Del	A	-	p.F153fs
LIHC	TCGA-DD-A3A0-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36766828:36767053:36768447:36768637:36776340:36776415,	36768448	36768637	36768537	36768537	Frame_Shift_Del	A	-	p.S808fs
LIHC	TCGA-DD-A3A0-01	STAR	ENST00000521236.1	chr8	38003880:38003965:38005717:38005877:38006158:38006272,	38005718	38005877	38005786	38005786	Frame_Shift_Del	C	-	p.E81fs
LIHC	TCGA-DD-A3A0-01	STAR	ENST00000276449.4,ENST00000522050.1	chr8	38003880:38003965:38005717:38005845:38006158:38006272,	38005718	38005845	38005786	38005786	Frame_Shift_Del	C	-	p.E81fs
LIHC	TCGA-DD-A3A0-01	DDHD2	ENST00000520272.2,ENST00000397166.2,ENST00000527834.1,ENST00000527415.1,ENST00000532222.1,ENST00000519857.1,ENST00000529642.1	chr8	38090656:38090732:38091911:38092102:38095055:38095103,	38091912	38092102	38091970	38091970	Frame_Shift_Del	G	-	p.L93fs
LIHC	TCGA-DD-A3A0-01	DDHD2	ENST00000526370.1	chr8	38090656:38090732:38091911:38092028:38095055:38095140,	38091912	38092028	38091970	38091970	Frame_Shift_Del	G	-	p.L93fs
LIHC	TCGA-DD-A3A0-01	DDHD2	ENST00000528358.1	chr8	38090656:38090732:38091917:38092102:38095055:38095103,	38091918	38092102	38091970	38091970	Frame_Shift_Del	G	-	p.L93fs
LIHC	TCGA-DD-A3A0-01	DDHD2	ENST00000520272.2,ENST00000397166.2,ENST00000520176.1,ENST00000529845.1,ENST00000517385.1,ENST00000526144.1	chr8	38110474:38110645:38111073:38111236:38117557:38117665,	38111074	38111236	38111132	38111132	Frame_Shift_Del	G	-	p.V650fs
LIHC	TCGA-DD-A3A0-01	DDHD2	ENST00000520272.2,ENST00000397166.2,ENST00000520176.1,ENST00000529845.1,ENST00000517385.1,ENST00000526144.1	chr8	38110474:38110645:38111073:38111236:38117557:38117665,	38111074	38111236	38111192	38111192	Frame_Shift_Del	T	-	p.S670fs
LIHC	TCGA-DD-A3A0-01	LETM2	ENST00000297720.5,ENST00000524874.1,ENST00000530448.1,ENST00000379957.4,ENST00000518883.2,ENST00000523268.2,ENST00000523983.2,ENST00000527710.1	chr8	38261930:38262024:38264463:38264556:38264879:38264981,	38264464	38264556	38264512	38264512	Frame_Shift_Del	A	-	p.K423fs
LIHC	TCGA-DD-A3A0-01	TACC1	ENST00000522904.1,ENST00000520973.1,ENST00000518415.1,ENST00000520615.1,ENST00000317827.4,ENST00000443286.2,ENST00000520340.1	chr8	38646221:38646337:38677039:38678153:38682825:38682886,	38677040	38678153	38677928	38677928	Frame_Shift_Del	G	-	p.W389fs
LIHC	TCGA-DD-A3A0-01	ADAM32	ENST00000379907.4	chr8	39044427:39044564:39068662:39068843:39079128:39079221,	39068663	39068843	39068713	39068713	Frame_Shift_Del	A	-	p.Q368fs
LIHC	TCGA-DD-A3A0-01	ADAM32	ENST00000379907.4	chr8	39068662:39068843:39079128:39079221:39080558:39080757,	39079129	39079221	39079155	39079155	Frame_Shift_Del	T	-	p.D420fs
LIHC	TCGA-DD-A3A0-01	ADAM18	ENST00000379866.1,ENST00000265707.5	chr8	39502856:39502993:39505862:39506046:39521313:39521409,	39505863	39506046	39506006	39506006	Frame_Shift_Del	T	-	p.I397fs
LIHC	TCGA-DD-A3A0-01	IDO1	ENST00000519154.1,ENST00000522495.1,ENST00000518237.1,ENST00000521636.1,ENST00000253513.7	chr8	39775403:39775489:39775606:39775726:39776333:39776452,	39775607	39775726	39775672	39775672	Frame_Shift_Del	G	-	p.L83fs
LIHC	TCGA-DD-A3A0-01	IDO1	ENST00000253513.7	chr8	39775606:39775726:39776333:39776463:39780070:39780170,	39776334	39776463	39776398	39776398	Frame_Shift_Del	T	-	p.I123fs
LIHC	TCGA-DD-A3A0-01	IDO1	ENST00000519154.1,ENST00000522495.1,ENST00000518237.1,ENST00000521636.1	chr8	39775606:39775726:39776333:39776452:39777618:39777633,	39776334	39776452	39776398	39776398	Frame_Shift_Del	T	-	p.I123fs
LIHC	TCGA-DD-A3A0-01	AP3M2	ENST00000518421.1	chr8	42010602:42010623:42012133:42012478:42015458:42015603,42011995:42012054:42012133:42012478:42015458:42015603,	42012134	42012478	42012427	42012427	Frame_Shift_Del	C	-	p.V74fs
LIHC	TCGA-DD-A3A0-01	AP3M2	ENST00000174653.3	chr8	42010463:42010623:42012083:42012478:42015458:42015603,	42012084	42012478	42012427	42012427	Frame_Shift_Del	C	-	p.V74fs
LIHC	TCGA-DD-A3A0-01	IKBKB	ENST00000520201.1,ENST00000517917.1,ENST00000520835.1,ENST00000520655.1,ENST00000517890.1,ENST00000518679.1,ENST00000379708.3,ENST00000416505.2,ENST00000523105.1,ENST00000521661.1,ENST00000342222.2,ENST00000520810.1	chr8	42174227:42174422:42175174:42175289:42176069:42176193,	42175175	42175289	42175209	42175209	Frame_Shift_Del	T	-	p.V387fs
LIHC	TCGA-DD-A3A0-01	POLB	ENST00000522610.1,ENST00000265421.4,ENST00000532157.1,ENST00000518925.1,ENST00000520008.1	chr8	42202477:42202537:42206533:42206608:42207524:42207583,	42206534	42206608	42206573	42206573	Frame_Shift_Del	T	-	p.F76fs
LIHC	TCGA-DD-A3A0-01	RNF170	ENST00000319073.4,ENST00000240159.4	chr8	42720608:42720632:42725146:42725255:42729073:42729149,42716887:42716998:42725146:42725255:42729073:42729149,	42725147	42725255	42725150	42725150	Frame_Shift_Del	A	-	p.C107fs
LIHC	TCGA-DD-A3A0-01	HOOK3	ENST00000524839.1,ENST00000526882.1,ENST00000307602.4,ENST00000533539.1	chr8	42857249:42857284:42862989:42863072:42865447:42865491,	42862990	42863072	42863037	42863037	Frame_Shift_Del	T	-	p.I569fs
LIHC	TCGA-DD-A3A0-01	SPIDR	ENST00000521214.1,ENST00000519661.1,ENST00000524006.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48352962:48353104:48508372:48508568:48511507:48511597,	48508373	48508568	48508459	48508459	Frame_Shift_Del	A	-	p.E395fs
LIHC	TCGA-DD-A3A0-01	SPIDR	ENST00000521214.1,ENST00000519661.1,ENST00000524006.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48352962:48353104:48508372:48508568:48511507:48511597,	48508373	48508568	48508538	48508538	Frame_Shift_Del	G	-	p.K421fs
LIHC	TCGA-DD-A3A0-01	SPIDR	ENST00000519362.1,ENST00000521214.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1	chr8	48626091:48626203:48639761:48639855:48647868:48647889,48626091:48626203:48639761:48639855:48641494:48641609,	48639762	48639855	48639793	48639793	Frame_Shift_Del	T	-	p.A791fs
LIHC	TCGA-DD-A3A0-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2,ENST00000536483.1	chr8	48686694:48686938:48689404:48689544:48690246:48690435,	48689405	48689544	48689466	48689466	Frame_Shift_Del	G	-	p.R4040fs
LIHC	TCGA-DD-A3A0-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48794472:48794658:48798504:48798708:48800107:48800266,	48798505	48798708	48798650	48798650	Frame_Shift_Del	C	-	p.G1543fs
LIHC	TCGA-DD-A3A0-01	PRKDC	ENST00000540819.1,ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48866909:48867006:48868433:48868508:48869730:48869823,	48868434	48868508	48868460	48868460	Frame_Shift_Del	T	-	p.I125fs
LIHC	TCGA-DD-A3A0-01	RB1CC1	ENST00000435644.2,ENST00000539297.1,ENST00000025008.5	chr8	53571432:53571536:53573155:53573217:53573485:53573567,	53573156	53573217	53573166	53573166	Frame_Shift_Del	G	-	p.P560fs
LIHC	TCGA-DD-A3A0-01	ATP6V1H	ENST00000524164.1,ENST00000359530.2,ENST00000521335.1	chr8	54745620:54745646:54754137:54754285:54755593:54755805,	54754138	54754285	54754206	54754206	Frame_Shift_Del	G	-	p.P15fs
LIHC	TCGA-DD-A3A0-01	MRPL15	ENST00000260102.4,ENST00000522521.1	chr8	55049827:55049993:55055222:55055346:55059941:55060104,	55055223	55055346	55055235	55055235	Frame_Shift_Del	T	-	p.F148fs
LIHC	TCGA-DD-A3A0-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56698977	56698977	Frame_Shift_Del	A	-	p.K175fs
LIHC	TCGA-DD-A3A0-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56699104	56699104	Frame_Shift_Del	A	-	p.E216fs
LIHC	TCGA-DD-A3A0-01	SDR16C5	ENST00000396721.2,ENST00000303749.3	chr8	57213859:57214132:57218155:57218281:57219234:57219379,	57218156	57218281	57218232	57218232	Frame_Shift_Del	T	-	p.I210fs
LIHC	TCGA-DD-A3A0-01	UBXN2B	ENST00000399598.2,ENST00000520732.1	chr8	59345718:59345802:59346953:59347063:59352191:59352329,	59346954	59347063	59346992	59346992	Frame_Shift_Del	T	-	p.S154fs
LIHC	TCGA-DD-A3A0-01	NSMAF	ENST00000519858.1,ENST00000038176.3,ENST00000427130.2	chr8	59515768:59515945:59518485:59518594:59520327:59520399,	59518486	59518594	59518504	59518504	Frame_Shift_Del	A	-	p.Y284fs
LIHC	TCGA-DD-A3A0-01	CHD7	ENST00000423902.2	chr8	61769415:61769447:61773462:61773684:61774754:61774895,	61773463	61773684	61773613	61773613	Frame_Shift_Del	A	-	p.K2587fs
LIHC	TCGA-DD-A3A0-01	CLVS1	ENST00000325897.4	chr8	62200538:62200697:62212235:62212841:62289163:62289338,	62212236	62212841	62212711	62212711	Frame_Shift_Del	A	-	p.K109fs
LIHC	TCGA-DD-A3A0-01	CLVS1	ENST00000521189.1	chr8	62200538:62200697:62212235:62212837:62289163:62289338,	62212236	62212837	62212711	62212711	Frame_Shift_Del	A	-	p.K109fs
LIHC	TCGA-DD-A3A0-01	ASPH	ENST00000379454.4,ENST00000541428.1	chr8	62465589:62465679:62468482:62468581:62475302:62475439,	62468483	62468581	62468487	62468487	Frame_Shift_Del	A	-	p.L482fs
LIHC	TCGA-DD-A3A0-01	ASPH	ENST00000379454.4,ENST00000445642.3,ENST00000519678.1,ENST00000524173.1,ENST00000518068.1,ENST00000522835.1,ENST00000519234.1,ENST00000517903.1,ENST00000522919.1,ENST00000356457.5,ENST00000523927.1,ENST00000517847.2,ENST00000541428.1	chr8	62555944:62555992:62556503:62556560:62557158:62557191,	62556504	62556560	62556509	62556509	Frame_Shift_Del	T	-	p.N206fs
LIHC	TCGA-DD-A3A0-01	ASPH	ENST00000518068.1,ENST00000522835.1,ENST00000518306.1,ENST00000523927.1	chr8	62559308:62559437:62563608:62563683:62566126:62566219,62557158:62557191:62563608:62563683:62566126:62566219,	62563609	62563683	62563655	62563655	Frame_Shift_Del	T	-	p.K119fs
LIHC	TCGA-DD-A3A0-01	YTHDF3	ENST00000523455.1	chr8	64081947:64081970:64087895:64087975:64098705:64098755,	64087896	64087975	64087942	64087942	Frame_Shift_Del	T	-	p.D34fs
LIHC	TCGA-DD-A3A0-01	YTHDF3	ENST00000517371.1	chr8	64081947:64081970:64087889:64087975:64098705:64098755,64081947:64081970:64087889:64087975:64122240:64122663,	64087890	64087975	64087942	64087942	Frame_Shift_Del	T	-	p.D34fs
LIHC	TCGA-DD-A3A0-01	YTHDF3	ENST00000524135.1,ENST00000521674.1,ENST00000520640.1,ENST00000517303.1,ENST00000542911.2	chr8	64087895:64087975:64098705:64100303:64122240:64122663,	64098706	64100303	64100256	64100256	Frame_Shift_Del	T	-	p.F562fs
LIHC	TCGA-DD-A3A0-01	ARMC1	ENST00000276569.3	chr8	66517497:66517572:66517656:66517773:66525478:66525668,	66517657	66517773	66517737	66517737	Frame_Shift_Del	T	-	p.I168fs
LIHC	TCGA-DD-A3A0-01	MTFR1	ENST00000522239.1	chr8	66582107:66582253:66594562:66594686:66605878:66605994,	66594563	66594686	66594636	66594636	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-DD-A3A0-01	MTFR1	ENST00000424808.2,ENST00000262146.4	chr8	66582215:66582253:66594587:66594686:66605878:66605994,	66594588	66594686	66594636	66594636	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-DD-A3A0-01	PDE7A	ENST00000396642.3,ENST00000379419.4,ENST00000518667.1,ENST00000401827.3	chr8	66651736:66651832:66657641:66657705:66659886:66660038,	66657642	66657705	66657673	66657673	Frame_Shift_Del	A	-	p.F156fs
LIHC	TCGA-DD-A3A0-01	MYBL1	ENST00000522677.3,ENST00000524176.2	chr8	67485598:67485741:67488241:67488610:67492367:67492598,	67488242	67488610	67488461	67488461	Frame_Shift_Del	C	-	p.G417fs
LIHC	TCGA-DD-A3A0-01	MCMDC2	ENST00000541540.1,ENST00000492775.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3,ENST00000415737.1	chr8	67791049:67791154:67793083:67793209:67795991:67796229,	67793084	67793209	67793148	67793148	Frame_Shift_Del	A	-	p.V258fs
LIHC	TCGA-DD-A3A0-01	MCMDC2	ENST00000541540.1,ENST00000492775.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3,ENST00000415737.1	chr8	67791049:67791154:67793083:67793209:67795991:67796229,	67793084	67793209	67793159	67793159	Frame_Shift_Del	A	-	p.Q262fs
LIHC	TCGA-DD-A3A0-01	MCMDC2	ENST00000541540.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3,ENST00000415737.1	chr8	67793083:67793209:67795991:67796229:67803099:67803305,	67795992	67796229	67796193	67796193	Frame_Shift_Del	T	-	p.I346fs
LIHC	TCGA-DD-A3A0-01	CSPP1	ENST00000262210.5,ENST00000519163.1	chr8	68044185:68044315:68049690:68049838:68062017:68062170,	68049691	68049838	68049789	68049789	Frame_Shift_Del	A	-	p.G637fs
LIHC	TCGA-DD-A3A0-01	CSPP1	ENST00000262210.5,ENST00000519163.1	chr8	68049690:68049838:68062017:68062170:68066258:68066371,	68062018	68062170	68062130	68062130	Frame_Shift_Del	A	-	p.S691fs
LIHC	TCGA-DD-A3A0-01	ARFGEF1	ENST00000520381.1,ENST00000262215.3	chr8	68170319:68170525:68172049:68172161:68178240:68178442,	68172050	68172161	68172101	68172101	Frame_Shift_Del	G	-	p.T729fs
LIHC	TCGA-DD-A3A0-01	ARFGEF1	ENST00000262215.3	chr8	68188210:68188344:68189516:68189692:68200189:68200300,	68189517	68189692	68189668	68189668	Frame_Shift_Del	T	-	p.N351fs
LIHC	TCGA-DD-A3A0-01	ARFGEF1	ENST00000262215.3,ENST00000519436.1	chr8	68213458:68213615:68214670:68214701:68255398:68255571,	68214671	68214701	68214691	68214691	Frame_Shift_Del	T	-	p.K45fs
LIHC	TCGA-DD-A3A0-01	CPA6	ENST00000518549.1,ENST00000297770.4,ENST00000297769.4	chr8	68423775:68423890:68430157:68430282:68536410:68536486,	68430158	68430282	68430195	68430195	Frame_Shift_Del	G	-	p.L95fs
LIHC	TCGA-DD-A3A0-01	PREX2	ENST00000529398.1,ENST00000517617.1,ENST00000288368.4	chr8	69002813:69002950:69005839:69005957:69009251:69009436,	69005840	69005957	69005912	69005912	Frame_Shift_Del	C	-	p.P776fs
LIHC	TCGA-DD-A3A0-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.G74fs
LIHC	TCGA-DD-A3A0-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71126137:71126310:71128894:71128999:71208978:71209035,	71128895	71128999	71128961	71128961	Frame_Shift_Del	T	-	p.N7fs
LIHC	TCGA-DD-A3A0-01	TRAM1	ENST00000262213.2,ENST00000520700.1,ENST00000521425.1,ENST00000536748.1	chr8	71508497:71508556:71510129:71510246:71510368:71510487,	71510130	71510246	71510163	71510163	Frame_Shift_Del	A	-	p.F45fs
LIHC	TCGA-DD-A3A0-01	TRAM1	ENST00000262213.2,ENST00000520700.1,ENST00000521425.1,ENST00000518678.1,ENST00000536748.1	chr8	71510129:71510246:71510368:71510490:71512253:71512317,	71510369	71510490	71510404	71510404	Frame_Shift_Del	T	-	p.I7fs
LIHC	TCGA-DD-A3A0-01	SBSPON	ENST00000519697.1	chr8	73984014:73984105:73993253:73993448:74035741:74036323,	73993254	73993448	73993383	73993383	Frame_Shift_Del	T	-	p.T94fs
LIHC	TCGA-DD-A3A0-01	STAU2	ENST00000521727.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521447.1	chr8	74529526:74529686:74585341:74585477:74600888:74601048,	74585342	74585477	74585429	74585429	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A3A0-01	UBE2W	ENST00000453587.2,ENST00000419880.3,ENST00000517608.1,ENST00000602593.1,ENST00000602969.1	chr8	74722708:74722864:74737381:74737484:74742615:74742707,	74737382	74737484	74737415	74737415	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-DD-A3A0-01	UBE2W	ENST00000453587.2,ENST00000419880.3,ENST00000517608.1,ENST00000602593.1,ENST00000602969.1	chr8	74722708:74722864:74737381:74737484:74742615:74742707,	74737382	74737484	74737430	74737430	Frame_Shift_Del	A	-	p.F83fs
LIHC	TCGA-DD-A3A0-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75156776	75156776	Frame_Shift_Del	T	-	p.K631fs
LIHC	TCGA-DD-A3A0-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75156763:75157410:75171619:75171738:75227095:75227855,	75171620	75171738	75171714	75171714	Frame_Shift_Del	G	-	p.A388fs
LIHC	TCGA-DD-A3A0-01	GDAP1	ENST00000220822.7	chr8	75262678:75262813:75263508:75263701:75272371:75272483,	75263509	75263701	75263593	75263593	Frame_Shift_Del	T	-	p.F68fs
LIHC	TCGA-DD-A3A0-01	CRISPLD1	ENST00000520277.1	chr8	75897104:75897155:75898160:75898480:75924667:75924724,	75898161	75898480	75898389	75898389	Frame_Shift_Del	C	-	p.A56fs
LIHC	TCGA-DD-A3A0-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81411964	81411964	Frame_Shift_Del	A	-	p.Q403fs
LIHC	TCGA-DD-A3A0-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81412534	81412534	Frame_Shift_Del	A	-	p.E593fs
LIHC	TCGA-DD-A3A0-01	IMPA1	ENST00000449740.2,ENST00000522997.1,ENST00000523942.1,ENST00000256108.5,ENST00000519816.1,ENST00000519964.1,ENST00000311489.4	chr8	82588468:82588514:82591360:82591465:82592884:82593018,	82591361	82591465	82591428	82591428	Frame_Shift_Del	T	-	p.S79fs
LIHC	TCGA-DD-A3A0-01	IMPA1	ENST00000449740.2	chr8	82593732:82593819:82597997:82598198:82598486:82598517,	82597998	82598198	82598145	82598145	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A3A0-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626192	82626192	Frame_Shift_Del	T	-	p.K147fs
LIHC	TCGA-DD-A3A0-01	RALYL	ENST00000521376.1	chr8	85774530:85774688:85785518:85785632:85833128:85833717,	85785519	85785632	85785572	85785572	Frame_Shift_Del	A	-	p.K209fs
LIHC	TCGA-DD-A3A0-01	LRRCC1	ENST00000523669.1	chr8	86022349:86022415:86025166:86025334:86037026:86037174,	86025167	86025334	86025188	86025188	Frame_Shift_Del	T	-	p.I113fs
LIHC	TCGA-DD-A3A0-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041562	86041562	Frame_Shift_Del	A	-	p.E505fs
LIHC	TCGA-DD-A3A0-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86042153:86042293:86043994:86044196:86047081:86047267,	86043995	86044196	86044188	86044188	Frame_Shift_Del	T	-	p.F634fs
LIHC	TCGA-DD-A3A0-01	E2F5	ENST00000518234.1,ENST00000256117.5,ENST00000519128.1,ENST00000521429.1,ENST00000416274.2,ENST00000517476.1	chr8	86119659:86119724:86121376:86121644:86124391:86124439,	86121377	86121644	86121562	86121562	Frame_Shift_Del	G	-	p.M267fs
LIHC	TCGA-DD-A3A0-01	C8orf59	ENST00000458398.2,ENST00000524353.1,ENST00000518091.1,ENST00000417663.2,ENST00000421308.2	chr8	86126790:86126860:86127149:86127266:86129614:86129731,	86127150	86127266	86127219	86127219	Frame_Shift_Del	A	-	p.F54fs
LIHC	TCGA-DD-A3A0-01	CA13	ENST00000321764.3	chr8	86157755:86158094:86162968:86163166:86171649:86171768,	86162969	86163166	86162989	86162989	Frame_Shift_Del	T	-	p.F21fs
LIHC	TCGA-DD-A3A0-01	CA13	ENST00000321764.3	chr8	86157755:86158094:86162968:86163166:86171649:86171768,	86162969	86163166	86163160	86163160	Frame_Shift_Del	A	-	p.K77fs
LIHC	TCGA-DD-A3A0-01	CA2	ENST00000520127.1	chr8	86377500:86377698:86386552:86386645:86388026:86388089,	86386553	86386645	86386635	86386635	Frame_Shift_Del	T	-	p.I145fs
LIHC	TCGA-DD-A3A0-01	ATP6V0D2	ENST00000285393.3	chr8	87155105:87155183:87162340:87162517:87163694:87163769,	87162341	87162517	87162417	87162417	Frame_Shift_Del	C	-	p.T239fs
LIHC	TCGA-DD-A3A0-01	WWP1	ENST00000265428.4,ENST00000517970.1	chr8	87410803:87410867:87414247:87414432:87423766:87424103,	87414248	87414432	87414381	87414381	Frame_Shift_Del	A	-	p.K225fs
LIHC	TCGA-DD-A3A0-01	RMDN1	ENST00000519966.1,ENST00000521045.1,ENST00000430676.2,ENST00000406452.3,ENST00000523911.1,ENST00000519789.1	chr8	87498790:87498872:87500780:87500868:87519223:87519306,	87500781	87500868	87500813	87500813	Frame_Shift_Del	T	-	p.K101fs
LIHC	TCGA-DD-A3A0-01	NBN	ENST00000517772.1,ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90982747:90982785:90983400:90983518:90990447:90990551,	90983401	90983518	90983477	90983477	Frame_Shift_Del	T	-	p.N209fs
LIHC	TCGA-DD-A3A0-01	DECR1	ENST00000517314.1,ENST00000520227.1,ENST00000220764.2,ENST00000523447.1,ENST00000517761.1,ENST00000522161.1,ENST00000519007.1,ENST00000519410.1	chr8	91013744:91013789:91031136:91031194:91031313:91031400,91029529:91029554:91031136:91031194:91031313:91031400,	91031137	91031194	91031148	91031148	Frame_Shift_Del	T	-	p.V86fs
LIHC	TCGA-DD-A3A0-01	DECR1	ENST00000518725.1	chr8	91029529:91029554:91031043:91031194:91031313:91031400,	91031044	91031194	91031148	91031148	Frame_Shift_Del	T	-	p.V86fs
LIHC	TCGA-DD-A3A0-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000522862.1,ENST00000309536.2,ENST00000522181.1	chr8	92261846:92262072:92301363:92301474:92307758:92307931,	92301364	92301474	92301379	92301379	Frame_Shift_Del	T	-	p.V70fs
LIHC	TCGA-DD-A3A0-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000309536.2,ENST00000520818.1,ENST00000522181.1	chr8	92307851:92307931:92330443:92330608:92346522:92346675,	92330444	92330608	92330529	92330529	Frame_Shift_Del	C	-	p.T188fs
LIHC	TCGA-DD-A3A0-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95182624:95182775:95183081:95183213:95186024:95186224,	95183082	95183213	95183144	95183144	Frame_Shift_Del	A	-	p.S285fs
LIHC	TCGA-DD-A3A0-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95182624:95182775:95183081:95183213:95186024:95186224,	95183082	95183213	95183196	95183196	Frame_Shift_Del	G	-	p.P267fs
LIHC	TCGA-DD-A3A0-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95186024:95186224:95186329:95186488:95188768:95188907,	95186330	95186488	95186357	95186357	Frame_Shift_Del	T	-	p.T186fs
LIHC	TCGA-DD-A3A0-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000423620.2	chr8	95680176:95680478:95683680:95683899:95686535:95686722,	95683681	95683899	95683842	95683842	Frame_Shift_Del	G	-	p.L465fs
LIHC	TCGA-DD-A3A0-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000520845.1,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95866032:95866143:95869004:95869206:95871738:95871860,	95869005	95869206	95869029	95869029	Frame_Shift_Del	T	-	p.F593fs
LIHC	TCGA-DD-A3A0-01	INTS8	ENST00000520315.1,ENST00000523731.1,ENST00000523206.1,ENST00000447247.1,ENST00000520526.1	chr8	95871738:95871860:95877733:95877918:95878385:95878419,	95877734	95877918	95877744	95877744	Frame_Shift_Del	T	-	p.L697fs
LIHC	TCGA-DD-A3A0-01	INTS8	ENST00000343161.4,ENST00000524333.1	chr8	95871738:95871860:95877733:95877928:95878385:95878419,	95877734	95877928	95877744	95877744	Frame_Shift_Del	T	-	p.L697fs
LIHC	TCGA-DD-A3A0-01	INTS8	ENST00000524333.1	chr8	95877847:95877918:95878385:95878419:95879367:95879424,95877733:95877928:95878385:95878419:95879367:95879424,	95878386	95878419	95878401	95878401	Frame_Shift_Del	T	-	p.S759fs
LIHC	TCGA-DD-A3A0-01	CCNE2	ENST00000523476.1,ENST00000396133.3,ENST00000524224.1,ENST00000308108.4,ENST00000521809.1,ENST00000520509.1	chr8	95897690:95897786:95900154:95900301:95902642:95902686,	95900155	95900301	95900245	95900245	Frame_Shift_Del	A	-	p.F170fs
LIHC	TCGA-DD-A3A0-01	CCNE2	ENST00000523476.1,ENST00000396133.3,ENST00000524224.1,ENST00000308108.4,ENST00000521809.1,ENST00000520509.1	chr8	95897690:95897786:95900154:95900301:95902642:95902686,	95900155	95900301	95900265	95900265	Frame_Shift_Del	A	-	p.Y164fs
LIHC	TCGA-DD-A3A0-01	PTDSS1	ENST00000337004.4,ENST00000517309.1,ENST00000522072.1,ENST00000455950.2	chr8	97316267:97316409:97318671:97318784:97321784:97321850,	97318672	97318784	97318739	97318739	Frame_Shift_Del	G	-	p.W321fs
LIHC	TCGA-DD-A3A0-01	MTDH	ENST00000336273.3,ENST00000519934.1	chr8	98699656:98699833:98701265:98701331:98703179:98703266,	98701266	98701331	98701298	98701298	Frame_Shift_Del	T	-	p.F260fs
LIHC	TCGA-DD-A3A0-01	LAPTM4B	ENST00000445593.2,ENST00000521545.2	chr8	98828285:98828408:98831367:98831466:98837285:98837381,	98831368	98831466	98831380	98831380	Frame_Shift_Del	C	-	p.P232fs
LIHC	TCGA-DD-A3A0-01	MATN2	ENST00000521689.1,ENST00000518154.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000524308.1	chr8	99033437:99033555:99039643:99040057:99042689:99042842,	99039644	99040057	99039856	99039856	Frame_Shift_Del	A	-	p.K720fs
LIHC	TCGA-DD-A3A0-01	STK3	ENST00000523601.1,ENST00000419617.2	chr8	99591986:99592017:99608259:99608397:99718694:99718862,	99608260	99608397	99608375	99608375	Frame_Shift_Del	T	-	p.N264fs
LIHC	TCGA-DD-A3A0-01	VPS13B	ENST00000355155.1,ENST00000358544.2,ENST00000441350.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100025987:100026163:100050650:100050794:100108539:100108660,	100050651	100050794	100050671	100050671	Frame_Shift_Del	T	-	p.T56fs
LIHC	TCGA-DD-A3A0-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100977562:100977658:100990144:100990303:100994164:100994344,	100990145	100990303	100990292	100990292	Frame_Shift_Del	A	-	p.F1124fs
LIHC	TCGA-DD-A3A0-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	101008689:101008758:101011489:101011648:101014429:101014592,	101011490	101011648	101011548	101011548	Frame_Shift_Del	T	-	p.N964fs
LIHC	TCGA-DD-A3A0-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075946	101075946	Frame_Shift_Del	T	-	p.K350fs
LIHC	TCGA-DD-A3A0-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000519092.1,ENST00000360863.6,ENST00000519408.1	chr8	101084372:101084458:101092361:101092583:101105674:101105737,	101092362	101092583	101092480	101092480	Frame_Shift_Del	T	-	p.N74fs
LIHC	TCGA-DD-A3A0-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000519092.1,ENST00000360863.6,ENST00000519408.1	chr8	101084372:101084458:101092361:101092583:101105674:101105737,	101092362	101092583	101092503	101092503	Frame_Shift_Del	T	-	p.K66fs
LIHC	TCGA-DD-A3A0-01	POLR2K	ENST00000353107.3	chr8	101163574:101163644:101164051:101164144:101165521:101165874,	101164052	101164144	101164129	101164129	Frame_Shift_Del	A	-	p.K47fs
LIHC	TCGA-DD-A3A0-01	SPAG1	ENST00000251809.3	chr8	101170262:101170346:101174506:101174648:101178041:101178201,	101174507	101174648	101174600	101174600	Frame_Shift_Del	A	-	p.E31fs
LIHC	TCGA-DD-A3A0-01	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101237400:101237567:101243383:101243516:101245638:101245765,	101243384	101243516	101243478	101243478	Frame_Shift_Del	A	-	p.L650fs
LIHC	TCGA-DD-A3A0-01	RNF19A	ENST00000519449.1,ENST00000341084.2	chr8	101273950:101273983:101276261:101276423:101276898:101277013,	101276262	101276423	101276308	101276308	Frame_Shift_Del	A	-	p.F474fs
LIHC	TCGA-DD-A3A0-01	RNF19A	ENST00000519449.1,ENST00000341084.2	chr8	101282096:101282241:101287180:101287389:101299728:101299765,	101287181	101287389	101287284	101287284	Frame_Shift_Del	G	-	p.P260fs
LIHC	TCGA-DD-A3A0-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101299826	101299826	Frame_Shift_Del	T	-	p.S193fs
LIHC	TCGA-DD-A3A0-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300230	101300230	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A3A0-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300242	101300242	Frame_Shift_Del	G	-	p.P54fs
LIHC	TCGA-DD-A3A0-01	ANKRD46	ENST00000519597.1,ENST00000358990.3,ENST00000520552.1,ENST00000335659.3,ENST00000520311.1	chr8	101534741:101534999:101540072:101540231:101541750:101542028,	101540073	101540231	101540177	101540177	Frame_Shift_Del	T	-	p.K122fs
LIHC	TCGA-DD-A3A0-01	ANKRD46	ENST00000519597.1,ENST00000358990.3,ENST00000520552.1,ENST00000335659.3,ENST00000520311.1	chr8	101534741:101534999:101540072:101540231:101541750:101542028,	101540073	101540231	101540184	101540184	Frame_Shift_Del	A	-	p.V120fs
LIHC	TCGA-DD-A3A0-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101585892:101586188:101589246:101589303:101596338:101596388,	101589247	101589303	101589268	101589268	Frame_Shift_Del	T	-	p.K402fs
LIHC	TCGA-DD-A3A0-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101589246:101589303:101596338:101596416:101601093:101601207,	101596339	101596416	101596388	101596388	Frame_Shift_Del	T	-	p.K374fs
LIHC	TCGA-DD-A3A0-01	ATP6V1C1	ENST00000521514.1	chr8	104053025:104053196:104054567:104054635:104061097:104061183,104033329:104033453:104054567:104054635:104061097:104061183,	104054568	104054635	104054613	104054613	Frame_Shift_Del	A	-	p.K60fs
LIHC	TCGA-DD-A3A0-01	ATP6V1C1	ENST00000395862.3,ENST00000521671.1,ENST00000518738.1,ENST00000518857.1,ENST00000521514.1	chr8	104064958:104065050:104066111:104066210:104068095:104068164,	104066112	104066210	104066165	104066165	Frame_Shift_Del	T	-	p.V176fs
LIHC	TCGA-DD-A3A0-01	BAALC	ENST00000297574.6	chr8	104212885:104212990:104225146:104225313:104240216:104240360,	104225147	104225313	104225254	104225254	Frame_Shift_Del	C	-	p.P90fs
LIHC	TCGA-DD-A3A0-01	SLC25A32	ENST00000297578.4,ENST00000521645.1,ENST00000523866.1,ENST00000523256.2,ENST00000543107.1	chr8	104412285:104412774:104413743:104413889:104414168:104414282,	104413744	104413889	104413781	104413781	Frame_Shift_Del	A	-	p.Y259fs
LIHC	TCGA-DD-A3A0-01	SLC25A32	ENST00000297578.4,ENST00000521645.1,ENST00000523866.1,ENST00000523256.2,ENST00000543107.1	chr8	104412285:104412774:104413743:104413889:104414168:104414282,	104413744	104413889	104413850	104413850	Frame_Shift_Del	T	-	p.I236fs
LIHC	TCGA-DD-A3A0-01	DCAF13	ENST00000518554.1,ENST00000519682.1	chr8	104427639:104427744:104432491:104432691:104438283:104438373,104427639:104427744:104432491:104432691:104433202:104433310,	104432492	104432691	104432586	104432586	Frame_Shift_Del	A	-	p.A207fs
LIHC	TCGA-DD-A3A0-01	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367316	105367316	Frame_Shift_Del	G	-	p.R414fs
LIHC	TCGA-DD-A3A0-01	OXR1	ENST00000452423.2,ENST00000519415.2	chr8	107726050:107726213:107752570:107752723:107754449:107754545,	107752571	107752723	107752620	107752620	Frame_Shift_Del	T	-	p.V711fs
LIHC	TCGA-DD-A3A0-01	ANGPT1	ENST00000520052.1,ENST00000517746.1,ENST00000297450.3,ENST00000520734.1	chr8	108276448:108276579:108296909:108297076:108306163:108306265,	108296910	108297076	108297071	108297071	Frame_Shift_Del	A	-	p.F148fs
LIHC	TCGA-DD-A3A0-01	EIF3E	ENST00000521614.1,ENST00000519517.1,ENST00000220849.5,ENST00000519030.1,ENST00000519627.1	chr8	109226835:109226945:109228640:109228742:109229562:109229689,	109228641	109228742	109228660	109228660	Frame_Shift_Del	T	-	p.K311fs
LIHC	TCGA-DD-A3A0-01	PKHD1L1	ENST00000378402.5	chr8	110432746:110432919:110437313:110437461:110439230:110439385,	110437314	110437461	110437376	110437376	Frame_Shift_Del	A	-	p.S920fs
LIHC	TCGA-DD-A3A0-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616880	116616880	Frame_Shift_Del	T	-	p.N439fs
LIHC	TCGA-DD-A3A0-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116632013	116632013	Frame_Shift_Del	G	-	p.P104fs
LIHC	TCGA-DD-A3A0-01	EIF3H	ENST00000276682.4,ENST00000521861.1,ENST00000520289.1	chr8	117658819:117658842:117661044:117661165:117668094:117668244,	117661045	117661165	117661153	117661153	Frame_Shift_Del	C	-	p.G240fs
LIHC	TCGA-DD-A3A0-01	MAL2	ENST00000522112.2	chr8	120221388:120221440:120233826:120233997:120252404:120252560,120220792:120220844:120233826:120233997:120252404:120252560,120181921:120182023:120233826:120233997:120252404:120252560,	120233827	120233997	120233926	120233926	Frame_Shift_Del	T	-	p.F78fs
LIHC	TCGA-DD-A3A0-01	ENPP2	ENST00000427067.2,ENST00000259486.6,ENST00000518958.1,ENST00000522826.1,ENST00000075322.6	chr8	120631483:120631544:120633633:120633759:120638804:120638960,	120633634	120633759	120633705	120633705	Frame_Shift_Del	T	-	p.N112fs
LIHC	TCGA-DD-A3A0-01	TAF2	ENST00000378164.2	chr8	120774654:120774848:120790258:120790369:120793292:120793433,	120790259	120790369	120790316	120790316	Frame_Shift_Del	T	-	p.K769fs
LIHC	TCGA-DD-A3A0-01	TAF2	ENST00000523904.1,ENST00000378164.2	chr8	120803563:120803699:120805605:120805691:120807771:120807871,	120805606	120805691	120805617	120805617	Frame_Shift_Del	T	-	p.K422fs
LIHC	TCGA-DD-A3A0-01	TAF2	ENST00000523904.1,ENST00000378164.2	chr8	120803563:120803699:120805605:120805691:120807771:120807871,	120805606	120805691	120805629	120805629	Frame_Shift_Del	A	-	p.F418fs
LIHC	TCGA-DD-A3A0-01	TAF2	ENST00000523904.1,ENST00000378164.2	chr8	120803563:120803699:120805605:120805691:120807771:120807871,	120805606	120805691	120805645	120805645	Frame_Shift_Del	A	-	p.L414fs
LIHC	TCGA-DD-A3A0-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4	chr8	121295874:121296017:121298099:121298209:121301846:121302005,	121298100	121298209	121298141	121298141	Frame_Shift_Del	G	-	p.G1337fs
LIHC	TCGA-DD-A3A0-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000440844.1	chr8	121357684:121357802:121379409:121379487:121381568:121381724,	121379410	121379487	121379455	121379455	Frame_Shift_Del	C	-	p.T1708fs
LIHC	TCGA-DD-A3A0-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123964530	123964530	Frame_Shift_Del	C	-	p.V260fs
LIHC	TCGA-DD-A3A0-01	FAM83A	ENST00000536633.1,ENST00000518448.1	chr8	124192398:124192469:124194265:124195576:124204042:124204210,	124194266	124195576	124195153	124195153	Frame_Shift_Del	C	-	p.S19fs
LIHC	TCGA-DD-A3A0-01	FAM83A	ENST00000536633.1,ENST00000518448.1	chr8	124192398:124192469:124194265:124195576:124204042:124204210,	124194266	124195576	124195299	124195299	Frame_Shift_Del	C	-	p.A68fs
LIHC	TCGA-DD-A3A0-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124332920:124333415:124335177:124335306:124338132:124338266,	124335178	124335306	124335248	124335248	Frame_Shift_Del	T	-	p.N1354fs
LIHC	TCGA-DD-A3A0-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124332920:124333415:124335177:124335306:124338132:124338266,	124335178	124335306	124335279	124335279	Frame_Shift_Del	T	-	p.S1344fs
LIHC	TCGA-DD-A3A0-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124348612:124348772:124349864:124350061:124351550:124351686,	124349865	124350061	124350049	124350049	Frame_Shift_Del	A	-	p.L956fs
LIHC	TCGA-DD-A3A0-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125029867:125029958:125033789:125033909:125035683:125035836,	125033790	125033909	125033835	125033835	Frame_Shift_Del	A	-	p.K688fs
LIHC	TCGA-DD-A3A0-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047670	125047670	Frame_Shift_Del	C	-	p.H813fs
LIHC	TCGA-DD-A3A0-01	TATDN1	ENST00000517678.1,ENST00000519776.1,ENST00000522927.1,ENST00000523631.1,ENST00000519548.1,ENST00000276692.6	chr8	125507758:125507783:125516511:125516588:125520714:125520755,	125516512	125516588	125516548	125516548	Frame_Shift_Del	A	-	p.L186fs
LIHC	TCGA-DD-A3A0-01	TATDN1	ENST00000521546.1	chr8	125507758:125507783:125516515:125516588:125520714:125520755,	125516516	125516588	125516548	125516548	Frame_Shift_Del	A	-	p.L186fs
LIHC	TCGA-DD-A3A0-01	NSMCE2	ENST00000522563.1	chr8	126104120:126104200:126114558:126114729:126163412:126163519,	126114559	126114729	126114654	126114654	Frame_Shift_Del	A	-	p.K28fs
LIHC	TCGA-DD-A3A0-01	NSMCE2	ENST00000517315.1,ENST00000517532.1,ENST00000522563.1,ENST00000287437.3	chr8	126163412:126163519:126194344:126194498:126369460:126369561,	126194345	126194498	126194364	126194364	Frame_Shift_Del	A	-	p.E95fs
LIHC	TCGA-DD-A3A0-01	FAM49B	ENST00000401979.2,ENST00000519824.2,ENST00000517801.1,ENST00000519540.1,ENST00000523288.1,ENST00000522250.1,ENST00000522746.1,ENST00000517654.1,ENST00000523509.1,ENST00000519110.1	chr8	130866511:130866589:130867856:130867993:130874474:130874572,	130867857	130867993	130867951	130867951	Frame_Shift_Del	G	-	p.P115fs
LIHC	TCGA-DD-A3A0-01	ASAP1	ENST00000519483.1,ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131070199:131070322:131072824:131073315:131088593:131088652,	131072825	131073315	131073044	131073044	Frame_Shift_Del	G	-	p.P991fs
LIHC	TCGA-DD-A3A0-01	ASAP1	ENST00000519483.1,ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131070199:131070322:131072824:131073315:131088593:131088652,	131072825	131073315	131073210	131073210	Frame_Shift_Del	G	-	p.P936fs
LIHC	TCGA-DD-A3A0-01	ASAP1	ENST00000519483.1	chr8	131088642:131088652:131092147:131092217:131104218:131104389,131088642:131088652:131092147:131092217:131124339:131124568,	131092148	131092217	131092205	131092205	Frame_Shift_Del	C	-	p.G862fs
LIHC	TCGA-DD-A3A0-01	ASAP1	ENST00000357668.1,ENST00000518721.1	chr8	131249167:131249240:131370262:131370389:131414130:131414161,	131370263	131370389	131370333	131370333	Frame_Shift_Del	T	-	p.N39fs
LIHC	TCGA-DD-A3A0-01	EFR3A	ENST00000254624.5,ENST00000519656.1,ENST00000334503.4	chr8	132968014:132968152:132971831:132971910:132980541:132980677,	132971832	132971910	132971887	132971887	Frame_Shift_Del	A	-	p.K278fs
LIHC	TCGA-DD-A3A0-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133827032	133827032	Frame_Shift_Del	G	-	p.G361fs
LIHC	TCGA-DD-A3A0-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133827063	133827063	Frame_Shift_Del	C	-	p.S371fs
LIHC	TCGA-DD-A3A0-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899043	133899043	Frame_Shift_Del	T	-	p.F476fs
LIHC	TCGA-DD-A3A0-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133913666:133913798:133918932:133919145:133920430:133920585,	133918933	133919145	133919056	133919056	Frame_Shift_Del	C	-	p.S1253fs
LIHC	TCGA-DD-A3A0-01	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133920430:133920585:133923621:133923778:133925291:133925480,	133923622	133923778	133923681	133923681	Frame_Shift_Del	G	-	p.V1354fs
LIHC	TCGA-DD-A3A0-01	TG	ENST00000542445.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133931684:133931770:133935582:133935753:133941320:133941437,	133935583	133935753	133935749	133935749	Frame_Shift_Del	T	-	p.C1565fs
LIHC	TCGA-DD-A3A0-01	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133948000:133948109:133953595:133953787:133961020:133961122,	133953596	133953787	133953628	133953628	Frame_Shift_Del	T	-	p.F1692fs
LIHC	TCGA-DD-A3A0-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042246	134042246	Frame_Shift_Del	T	-	p.L2406fs
LIHC	TCGA-DD-A3A0-01	WISP1	ENST00000517423.1	chr8	134203379:134203456:134225106:134225386:134232823:134233084,134203379:134203456:134225106:134225386:134237632:134237826,134203379:134203456:134225106:134225386:134239653:134239959,	134225107	134225386	134225319	134225319	Frame_Shift_Del	C	-	p.D94fs
LIHC	TCGA-DD-A3A0-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134233063	134233063	Frame_Shift_Del	C	-	p.P197fs
LIHC	TCGA-DD-A3A0-01	NDRG1	ENST00000414097.2,ENST00000519228.1,ENST00000520230.1,ENST00000519580.1,ENST00000522890.1,ENST00000517331.1,ENST00000522377.1,ENST00000323851.7,ENST00000517599.1,ENST00000518480.1,ENST00000537882.1,ENST00000522476.1	chr8	134269082:134269106:134270608:134270669:134271410:134271473,	134270609	134270669	134270657	134270657	Frame_Shift_Del	A	-	p.I135fs
LIHC	TCGA-DD-A3A0-01	ZFAT	ENST00000520727.1,ENST00000429442.2,ENST00000377838.3,ENST00000520356.1,ENST00000523243.1,ENST00000520214.1,ENST00000522974.1,ENST00000523924.1	chr8	135615049:135615176:135620971:135621122:135622712:135622898,	135620972	135621122	135621080	135621080	Frame_Shift_Del	G	-	p.T214fs
LIHC	TCGA-DD-A3A0-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139609146:139609213:139610961:139611141:139614357:139614402,	139610962	139611141	139611048	139611048	Frame_Shift_Del	G	-	p.L1427fs
LIHC	TCGA-DD-A3A0-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139609146:139609213:139610961:139611141:139614357:139614402,	139610962	139611141	139611124	139611124	Frame_Shift_Del	T	-	p.K1401fs
LIHC	TCGA-DD-A3A0-01	COL22A1	ENST00000435777.1,ENST00000303045.6	chr8	139737629:139737683:139749766:139749820:139763700:139763754,	139749767	139749820	139749816	139749816	Frame_Shift_Del	T	-	p.K698fs
LIHC	TCGA-DD-A3A0-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000519465.1,ENST00000430260.2,ENST00000522684.1,ENST00000523539.1,ENST00000535192.1	chr8	141675015:141675096:141678367:141678523:141684396:141684503,	141678368	141678523	141678498	141678498	Frame_Shift_Del	G	-	p.P913fs
LIHC	TCGA-DD-A3A0-01	PTK2	ENST00000340930.3,ENST00000395218.2	chr8	141684396:141684503:141685528:141685598:141696730:141696793,	141685529	141685598	141685532	141685532	Frame_Shift_Del	T	-	p.R877fs
LIHC	TCGA-DD-A3A0-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000518509.1,ENST00000340930.3,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141727787:141727808:141745349:141745554:141749116:141749206,	141745350	141745554	141745465	141745465	Frame_Shift_Del	C	-	p.E639fs
LIHC	TCGA-DD-A3A0-01	PTK2	ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000340930.3,ENST00000395218.2,ENST00000522684.1,ENST00000519993.1,ENST00000535192.1	chr8	141810557:141810675:141813641:141813749:141828375:141828448,	141813642	141813749	141813659	141813659	Frame_Shift_Del	T	-	p.I320fs
LIHC	TCGA-DD-A3A0-01	PTK2	ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000521059.1,ENST00000340930.3,ENST00000395218.2,ENST00000522684.1,ENST00000521791.1,ENST00000519993.1,ENST00000535192.1	chr8	141840574:141840625:141856358:141856421:141856697:141856777,	141856359	141856421	141856383	141856383	Frame_Shift_Del	T	-	p.K191fs
LIHC	TCGA-DD-A3A0-01	PTK2	ENST00000521395.1,ENST00000523803.1,ENST00000340930.3,ENST00000520892.1,ENST00000395218.2,ENST00000517453.1,ENST00000522684.1	chr8	141856757:141856777:141900641:141900868:142011223:142011257,141874410:141874498:141900641:141900868:142011223:142011257,141874410:141874498:141900641:141900868:141958764:141958822,141889610:141889736:141900641:141900868:141958764:141958822,141889610:141889736:141900641:141900868:142011223:142011257,141889610:141889736:141900641:141900868:141935759:141935848,	141900642	141900868	141900839	141900839	Frame_Shift_Del	T	-	p.I44fs
LIHC	TCGA-DD-A3A0-01	DENND3	ENST00000520986.1	chr8	142148120:142148236:142160932:142161052:142161717:142161936,	142160933	142161052	142160989	142160989	Frame_Shift_Del	C	-	p.S264fs
LIHC	TCGA-DD-A3A0-01	DENND3	ENST00000424248.1,ENST00000519811.1,ENST00000262585.2,ENST00000518668.1	chr8	142160932:142161052:142161717:142161936:142165947:142166069,	142161718	142161936	142161881	142161881	Frame_Shift_Del	C	-	p.A340fs
LIHC	TCGA-DD-A3A0-01	TSNARE1	ENST00000519651.1	chr8	143352927:143353052:143356141:143356224:143361220:143361358,143352927:143353052:143356141:143356224:143365773:143365846,	143356142	143356224	143356162	143356162	Frame_Shift_Del	C	-	p.A257fs
LIHC	TCGA-DD-A3A0-01	TOP1MT	ENST00000519977.1	chr8	144386553:144387085:144391584:144391713:144392237:144392387,	144391585	144391713	144391670	144391670	Frame_Shift_Del	T	-	p.T485fs
LIHC	TCGA-DD-A3A0-01	MROH6	ENST00000529971.1,ENST00000398882.3	chr8	144653046:144653164:144653836:144653991:144654202:144654355,	144653837	144653991	144653845	144653845	Frame_Shift_Del	G	-	p.P198fs
LIHC	TCGA-DD-A3A0-01	EEF1D	ENST00000532741.1,ENST00000526786.1,ENST00000534380.1,ENST00000442189.2,ENST00000530848.1,ENST00000526838.1,ENST00000530191.1,ENST00000529272.1,ENST00000529516.1,ENST00000531218.1,ENST00000533204.1,ENST00000419152.2,ENST00000395119.3,ENST00000529007.1,ENST00000533749.1,ENST00000317198.6,ENST00000524397.1,ENST00000530616.1,ENST00000423316.2,ENST00000530445.1,ENST00000533494.1	chr8	144663484:144663498:144668388:144668460:144668898:144669019,	144668389	144668460	144668397	144668397	Frame_Shift_Del	G	-	p.L477fs
LIHC	TCGA-DD-A3A0-01	EEF1D	ENST00000442189.2	chr8	144668923:144669022:144671160:144672251:144674816:144674830,144668923:144669022:144671160:144672251:144672777:144672899,	144671161	144672251	144671899	144671899	Frame_Shift_Del	A	-	p.F168fs
LIHC	TCGA-DD-A3A0-01	SCRIB	ENST00000546337.1,ENST00000320476.3,ENST00000377533.3,ENST00000526832.1,ENST00000356994.2	chr8	144874877:144875037:144875145:144875253:144876069:144876132,	144875146	144875253	144875243	144875243	Frame_Shift_Del	G	-	p.P1308fs
LIHC	TCGA-DD-A3A0-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144890805	144890805	Frame_Shift_Del	C	-	p.A697fs
LIHC	TCGA-DD-A3A0-01	SCRIB	ENST00000320476.3	chr8	144895987:144896066:144896170:144896288:144897383:144897549,	144896171	144896288	144896281	144896281	Frame_Shift_Del	A	-	p.F56fs
LIHC	TCGA-DD-A3A0-01	PUF60	ENST00000532884.1	chr8	144900031:144900143:144900245:144900455:144900542:144900646,	144900246	144900455	144900376	144900376	Frame_Shift_Del	C	-	p.G197fs
LIHC	TCGA-DD-A3A0-01	PUF60	ENST00000531951.1,ENST00000529999.1,ENST00000313352.7,ENST00000349157.6,ENST00000526683.1,ENST00000524570.1,ENST00000453551.2,ENST00000527744.1,ENST00000456095.2,ENST00000531897.1,ENST00000527197.1,ENST00000528999.1,ENST00000526459.1	chr8	144900165:144900245:144900362:144900455:144900542:144900646,	144900363	144900455	144900376	144900376	Frame_Shift_Del	C	-	p.G197fs
LIHC	TCGA-DD-A3A0-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144996809	144996809	Frame_Shift_Del	G	-	p.L2567fs
LIHC	TCGA-DD-A3A0-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000528025.1,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000528131.1,ENST00000527816.1,ENST00000356346.3,ENST00000354589.3,ENST00000526416.1,ENST00000357649.2	chr8	145010146:145010182:145011146:145011239:145011332:145011410,	145011147	145011239	145011192	145011192	Frame_Shift_Del	G	-	p.P267fs
LIHC	TCGA-DD-A3A0-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000528131.1,ENST00000527816.1,ENST00000356346.3,ENST00000354589.3,ENST00000526416.1,ENST00000357649.2	chr8	145011146:145011239:145011332:145011410:145012318:145012408,	145011333	145011410	145011396	145011396	Frame_Shift_Del	C	-	p.G230fs
LIHC	TCGA-DD-A3A0-01	GRINA	ENST00000527194.1	chr8	145066197:145066246:145066412:145066541:145066632:145066676,145065914:145065972:145066412:145066541:145066632:145066676,145066045:145066117:145066412:145066541:145066632:145066676,	145066413	145066541	145066445	145066445	Frame_Shift_Del	G	-	p.V242fs
LIHC	TCGA-DD-A3A0-01	GRINA	ENST00000534791.1	chr8	145065914:145065972:145066045:145066541:145066632:145066676,	145066046	145066541	145066445	145066445	Frame_Shift_Del	G	-	p.V242fs
LIHC	TCGA-DD-A3A0-01	SHARPIN	ENST00000398712.2,ENST00000359551.6	chr8	145154831:145154972:145157953:145158128:145158455:145158659,	145157954	145158128	145158035	145158035	Frame_Shift_Del	G	-	p.L99fs
LIHC	TCGA-DD-A3A0-01	SHARPIN	ENST00000398712.2,ENST00000359551.6	chr8	145154831:145154972:145157953:145158128:145158455:145158659,	145157954	145158128	145158045	145158045	Frame_Shift_Del	C	-	p.G95fs
LIHC	TCGA-DD-A3A0-01	DGAT1	ENST00000524965.1,ENST00000332324.4	chr8	145541808:145541832:145541923:145542025:145542123:145542229,	145541924	145542025	145542017	145542017	Frame_Shift_Del	G	-	p.L196fs
LIHC	TCGA-DD-A3A0-01	SLC52A2	ENST00000526779.1	chr8	145582847:145583083:145583282:145583407:145583831:145584153,	145583283	145583407	145583349	145583349	Frame_Shift_Del	C	-	p.T66fs
LIHC	TCGA-DD-A3A0-01	SLC52A2	ENST00000532887.1,ENST00000402965.1,ENST00000527078.1,ENST00000530047.1,ENST00000329994.2	chr8	145582847:145583083:145583282:145584153:145584249:145584343,	145583283	145584153	145583349	145583349	Frame_Shift_Del	C	-	p.T66fs
LIHC	TCGA-DD-A3A0-01	SLC39A4	ENST00000530807.1	chr8	145637946:145638050:145638142:145638330:145638620:145638771,145637946:145638050:145638142:145638330:145638896:145638951,	145638143	145638330	145638174	145638174	Frame_Shift_Del	C	-	p.G570fs
LIHC	TCGA-DD-A3A0-01	TONSL	ENST00000409379.3,ENST00000497613.1	chr8	145655786:145655920:145656460:145656534:145657667:145657843,	145656461	145656534	145656486	145656486	Frame_Shift_Del	C	-	p.D1262fs
LIHC	TCGA-DD-A3A0-01	RECQL4	ENST00000532237.1,ENST00000532269.1,ENST00000428558.2,ENST00000532846.2	chr8	145740709:145740841:145741147:145741274:145741371:145741387,	145741148	145741274	145741231	145741231	Frame_Shift_Del	C	-	p.G394fs
LIHC	TCGA-DD-A3A0-01	DOCK8	ENST00000493666.2,ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	420400:420583:420948:421078:422047:422135,	420949	421078	420977	420977	Frame_Shift_Del	C	-	p.T1283fs
LIHC	TCGA-DD-A3A0-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	710860	710860	Frame_Shift_Del	T	-	p.F32fs
LIHC	TCGA-DD-A3A0-01	IL33	ENST00000456383.2	chr9	6215808:6215852:6241683:6241785:6250473:6250599,	6241684	6241785	6241772	6241772	Frame_Shift_Del	T	-	p.C26fs
LIHC	TCGA-DD-A3A0-01	GLDC	ENST00000463305.1,ENST00000321612.6	chr9	6592142:6592223:6592850:6592990:6595013:6595119,	6592851	6592990	6592863	6592863	Frame_Shift_Del	A	-	p.F463fs
LIHC	TCGA-DD-A3A0-01	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381022.2	chr9	13110634:13110739:13112022:13112145:13113009:13113053,	13112023	13112145	13112034	13112034	Frame_Shift_Del	G	-	p.Q1905fs
LIHC	TCGA-DD-A3A0-01	MPDZ	ENST00000447879.1,ENST00000541718.1,ENST00000536827.1,ENST00000381015.4,ENST00000546205.1,ENST00000319217.7,ENST00000381022.2	chr9	13193165:13193312:13196119:13196229:13205034:13205106,	13196120	13196229	13196180	13196180	Frame_Shift_Del	T	-	p.K532fs
LIHC	TCGA-DD-A3A0-01	NFIB	ENST00000397581.2,ENST00000380934.4,ENST00000397579.2,ENST00000380959.3,ENST00000543693.1,ENST00000380924.1,ENST00000380953.1,ENST00000397575.3	chr9	14146687:14146806:14150143:14150264:14155823:14155892,	14150144	14150264	14150181	14150181	Frame_Shift_Del	C	-	p.V257fs
LIHC	TCGA-DD-A3A0-01	SNAPC3	ENST00000490969.1,ENST00000467062.1	chr9	15457957:15458065:15459716:15460311:15461628:15461803,	15459717	15460311	15459816	15459816	Frame_Shift_Del	G	-	p.L396fs
LIHC	TCGA-DD-A3A0-01	CCDC171	ENST00000535968.1,ENST00000380701.3,ENST00000297641.3	chr9	15563975:15564127:15571621:15571757:15578846:15579021,	15571622	15571757	15571659	15571659	Frame_Shift_Del	A	-	p.K27fs
LIHC	TCGA-DD-A3A0-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16437173	16437173	Frame_Shift_Del	G	-	p.P340fs
LIHC	TCGA-DD-A3A0-01	CNTLN	ENST00000380647.3	chr9	17273730:17273864:17298187:17298350:17309055:17309250,	17298188	17298350	17298292	17298292	Frame_Shift_Del	A	-	p.Q363fs
LIHC	TCGA-DD-A3A0-01	CNTLN	ENST00000380647.3	chr9	17273730:17273864:17298187:17298350:17309055:17309250,	17298188	17298350	17298346	17298346	Frame_Shift_Del	A	-	p.Q381fs
LIHC	TCGA-DD-A3A0-01	HAUS6	ENST00000380502.3	chr9	19053140:19056402:19057958:19058999:19060085:19060221,	19057959	19058999	19058941	19058941	Frame_Shift_Del	T	-	p.K608fs
LIHC	TCGA-DD-A3A0-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19078173:19078300:19080476:19080670:19082870:19083041,	19080477	19080670	19080524	19080524	Frame_Shift_Del	T	-	p.K339fs
LIHC	TCGA-DD-A3A0-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19080476:19080670:19082870:19083041:19086731:19086780,	19082871	19083041	19082998	19082998	Frame_Shift_Del	A	-	p.L248fs
LIHC	TCGA-DD-A3A0-01	PLIN2	ENST00000276914.2	chr9	19118318:19118453:19119647:19119829:19120877:19121163,	19119648	19119829	19119689	19119689	Frame_Shift_Del	T	-	p.S246fs
LIHC	TCGA-DD-A3A0-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19300184:19300329:19305349:19305525:19316414:19316515,	19305350	19305525	19305449	19305449	Frame_Shift_Del	G	-	p.D235fs
LIHC	TCGA-DD-A3A0-01	DENND4C	ENST00000434457.2,ENST00000380432.2,ENST00000602925.1	chr9	19328027:19328160:19331975:19332182:19334974:19335103,	19331976	19332182	19332062	19332062	Frame_Shift_Del	T	-	p.S544fs
LIHC	TCGA-DD-A3A0-01	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20414163	20414163	Frame_Shift_Del	T	-	p.K227fs
LIHC	TCGA-DD-A3A0-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27157828:27158140:27168492:27168603:27169474:27169627,	27168493	27168603	27168597	27168597	Frame_Shift_Del	A	-	p.K157fs
LIHC	TCGA-DD-A3A0-01	ACO1	ENST00000309951.6,ENST00000541043.1,ENST00000379923.1	chr9	32424546:32424663:32425835:32425995:32427298:32427434,	32425836	32425995	32425915	32425915	Frame_Shift_Del	C	-	p.T423fs
LIHC	TCGA-DD-A3A0-01	DNAJA1	ENST00000330899.4	chr9	33026479:33026614:33026810:33026988:33029882:33029987,	33026811	33026988	33026949	33026949	Frame_Shift_Del	T	-	p.F92fs
LIHC	TCGA-DD-A3A0-01	B4GALT1	ENST00000379731.4	chr9	33120416:33120604:33135186:33135422:33166755:33167354,	33135187	33135422	33135392	33135392	Frame_Shift_Del	G	-	p.P148fs
LIHC	TCGA-DD-A3A0-01	NFX1	ENST00000379521.4,ENST00000318524.6,ENST00000379540.3,ENST00000466359.1	chr9	33319018:33319125:33328578:33328676:33332469:33332500,	33328579	33328676	33328664	33328664	Frame_Shift_Del	T	-	p.S664fs
LIHC	TCGA-DD-A3A0-01	NFX1	ENST00000379521.4,ENST00000379540.3	chr9	33352643:33352717:33354083:33354185:33354848:33354890,	33354084	33354185	33354163	33354163	Frame_Shift_Del	A	-	p.K938fs
LIHC	TCGA-DD-A3A0-01	AQP3	ENST00000473153.1	chr9	33442849:33442968:33443176:33443456:33443763:33443890,	33443177	33443456	33443332	33443332	Frame_Shift_Del	A	-	p.F120fs
LIHC	TCGA-DD-A3A0-01	AQP3	ENST00000297991.4	chr9	33442849:33442968:33443318:33443456:33443763:33443890,	33443319	33443456	33443332	33443332	Frame_Shift_Del	A	-	p.F120fs
LIHC	TCGA-DD-A3A0-01	NOL6	ENST00000455041.2	chr9	33467688:33467866:33468027:33468167:33468318:33468420,	33468028	33468167	33468050	33468050	Frame_Shift_Del	G	-	p.R468fs
LIHC	TCGA-DD-A3A0-01	NOL6	ENST00000297990.4,ENST00000379471.2,ENST00000353159.2	chr9	33467688:33467866:33468027:33468143:33468318:33468420,	33468028	33468143	33468050	33468050	Frame_Shift_Del	G	-	p.R468fs
LIHC	TCGA-DD-A3A0-01	ANKRD18B	ENST00000474881.2,ENST00000484634.1	chr9	33534367:33534505:33536875:33536943:33539446:33539500,	33536876	33536943	33536890	33536890	Frame_Shift_Del	T	-	p.I252fs
LIHC	TCGA-DD-A3A0-01	ANKRD18B	ENST00000357927.3,ENST00000290943.6	chr9	33550427:33550577:33555705:33555818:33558055:33558185,	33555706	33555818	33555747	33555747	Frame_Shift_Del	A	-	p.L691fs
LIHC	TCGA-DD-A3A0-01	PRSS3	ENST00000379405.3	chr9	33795567:33795611:33796640:33796800:33797826:33797975,	33796641	33796800	33796705	33796705	Frame_Shift_Del	C	-	p.L92fs
LIHC	TCGA-DD-A3A0-01	UBAP2	ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33943417:33943587:33944362:33944637:33948371:33948585,	33944363	33944637	33944516	33944516	Frame_Shift_Del	T	-	p.K464fs
LIHC	TCGA-DD-A3A0-01	UBAP2	ENST00000379239.4,ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33988970:33989124:33996220:33996331:33998784:33998862,	33996221	33996331	33996257	33996257	Frame_Shift_Del	T	-	p.K84fs
LIHC	TCGA-DD-A3A0-01	UBAP1	ENST00000540348.1,ENST00000297661.4,ENST00000379186.4,ENST00000536252.1,ENST00000359544.2	chr9	34220905:34220946:34234213:34234338:34241182:34241575,	34234214	34234338	34234282	34234282	Frame_Shift_Del	G	-	p.G35fs
LIHC	TCGA-DD-A3A0-01	DNAI1	ENST00000437363.1,ENST00000242317.4	chr9	34491492:34491552:34493191:34493326:34497112:34497197,	34493192	34493326	34493235	34493235	Frame_Shift_Del	A	-	p.E242fs
LIHC	TCGA-DD-A3A0-01	DNAI1	ENST00000437363.1,ENST00000242317.4	chr9	34491492:34491552:34493191:34493326:34497112:34497197,	34493192	34493326	34493276	34493276	Frame_Shift_Del	A	-	p.K257fs
LIHC	TCGA-DD-A3A0-01	CCL21	ENST00000259607.2	chr9	34709001:34709424:34709496:34709679:34709773:34709894,	34709497	34709679	34709543	34709543	Frame_Shift_Del	C	-	p.A109fs
LIHC	TCGA-DD-A3A0-01	VCP	ENST00000493886.1,ENST00000358901.6	chr9	35059744:35059798:35060309:35060522:35060797:35060920,	35060310	35060522	35060506	35060506	Frame_Shift_Del	G	-	p.P500fs
LIHC	TCGA-DD-A3A0-01	FANCG	ENST00000425676.1,ENST00000378643.3	chr9	35074367:35074491:35074923:35075079:35075275:35075322,	35074924	35075079	35074926	35074926	Frame_Shift_Del	G	-	p.P545fs
LIHC	TCGA-DD-A3A0-01	FANCG	ENST00000378643.3,ENST00000448890.1	chr9	35077261:35077396:35078137:35078340:35078601:35078643,	35078138	35078340	35078148	35078148	Frame_Shift_Del	T	-	p.N167fs
LIHC	TCGA-DD-A3A0-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35092043	35092043	Frame_Shift_Del	G	-	p.P614fs
LIHC	TCGA-DD-A3A0-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35092219	35092219	Frame_Shift_Del	A	-	p.F555fs
LIHC	TCGA-DD-A3A0-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35092523	35092523	Frame_Shift_Del	C	-	p.G454fs
LIHC	TCGA-DD-A3A0-01	PIGO	ENST00000378617.3,ENST00000298004.5,ENST00000341666.3,ENST00000361778.2	chr9	35093026:35093206:35093417:35093577:35093897:35094021,	35093418	35093577	35093528	35093528	Frame_Shift_Del	C	-	p.D277fs
LIHC	TCGA-DD-A3A0-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35093528	35093528	Frame_Shift_Del	C	-	p.D277fs
LIHC	TCGA-DD-A3A0-01	STOML2	ENST00000356493.5,ENST00000452248.2	chr9	35099957:35100169:35100594:35100723:35100928:35101008,	35100595	35100723	35100647	35100647	Frame_Shift_Del	T	-	p.N294fs
LIHC	TCGA-DD-A3A0-01	STOML2	ENST00000356493.5,ENST00000452248.2	chr9	35101900:35101959:35102091:35102191:35102682:35102820,	35102092	35102191	35102155	35102155	Frame_Shift_Del	G	-	p.R74fs
LIHC	TCGA-DD-A3A0-01	FAM214B	ENST00000605244.1,ENST00000488109.2,ENST00000378561.1,ENST00000603301.1,ENST00000378566.1,ENST00000322813.5,ENST00000378557.1	chr9	35104138:35105371:35105678:35105854:35105937:35106006,	35105679	35105854	35105748	35105748	Frame_Shift_Del	A	-	p.L465fs
LIHC	TCGA-DD-A3A0-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35295692:35295927:35310463:35310778:35313895:35313986,	35310464	35310778	35310645	35310645	Frame_Shift_Del	A	-	p.K315fs
LIHC	TCGA-DD-A3A0-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547399	35547399	Frame_Shift_Del	C	-	p.T294fs
LIHC	TCGA-DD-A3A0-01	RUSC2	ENST00000361226.3,ENST00000455600.1	chr9	35558193:35558368:35558458:35558564:35559222:35559269,	35558459	35558564	35558550	35558550	Frame_Shift_Del	C	-	p.I1109fs
LIHC	TCGA-DD-A3A0-01	CA9	ENST00000493245.1,ENST00000378357.4	chr9	35680114:35680136:35680749:35680831:35680961:35681135,	35680750	35680831	35680762	35680762	Frame_Shift_Del	C	-	p.A417fs
LIHC	TCGA-DD-A3A0-01	GBA2	ENST00000378094.4,ENST00000489025.1,ENST00000545786.1	chr9	35744293:35744409:35744611:35744703:35748342:35748924,	35744612	35744703	35744675	35744675	Frame_Shift_Del	G	-	p.H130fs
LIHC	TCGA-DD-A3A0-01	TMEM8B	ENST00000377991.4,ENST00000377988.2,ENST00000377996.1,ENST00000439587.2	chr9	35841537:35841791:35842388:35842714:35845971:35846065,	35842389	35842714	35842456	35842456	Frame_Shift_Del	G	-	p.L7fs
LIHC	TCGA-DD-A3A0-01	RNF38	ENST00000357058.3	chr9	36376004:36376124:36390463:36390613:36401094:36401193,36376004:36376124:36390463:36390613:36424609:36424680,36376004:36376124:36390463:36390613:36400550:36400869,	36390464	36390613	36390553	36390553	Frame_Shift_Del	T	-	p.R25fs
LIHC	TCGA-DD-A3A0-01	PAX5	ENST00000523241.1,ENST00000414447.1,ENST00000377853.2,ENST00000523493.1,ENST00000377852.2,ENST00000520281.1,ENST00000520154.1,ENST00000377840.2,ENST00000377847.2	chr9	37014993:37015191:37020632:37020798:37033982:37034028,	37020633	37020798	37020769	37020769	Frame_Shift_Del	C	-	p.V26fs
LIHC	TCGA-DD-A3A0-01	ZCCHC7	ENST00000461038.1,ENST00000336755.5,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2	chr9	37304184:37304310:37305540:37305711:37327795:37327831,	37305541	37305711	37305599	37305599	Frame_Shift_Del	C	-	p.A280fs
LIHC	TCGA-DD-A3A0-01	TRMT10B	ENST00000540616.1	chr9	37761899:37762114:37762539:37762682:37763625:37763750,	37762540	37762682	37762657	37762657	Frame_Shift_Del	A	-	p.R90fs
LIHC	TCGA-DD-A3A0-01	TRMT10B	ENST00000537911.1,ENST00000488673.2,ENST00000297994.3,ENST00000537016.1	chr9	37761899:37762114:37762573:37762682:37763625:37763750,	37762574	37762682	37762657	37762657	Frame_Shift_Del	A	-	p.R90fs
LIHC	TCGA-DD-A3A0-01	TRMT10B	ENST00000297994.3	chr9	37761899:37762114:37763625:37763750:37768072:37768160,37762573:37762682:37763625:37763750:37768072:37768160,	37763626	37763750	37763633	37763633	Frame_Shift_Del	C	-	p.C101fs
LIHC	TCGA-DD-A3A0-01	TRMT10B	ENST00000538370.1	chr9	37762573:37762682:37763625:37763862:37768072:37768160,37761899:37762114:37763625:37763862:37768072:37768160,	37763626	37763862	37763633	37763633	Frame_Shift_Del	C	-	p.C101fs
LIHC	TCGA-DD-A3A0-01	CNTNAP3	ENST00000297668.6,ENST00000358144.2	chr9	39088419:39088644:39099907:39100147:39102493:39102712,	39099908	39100147	39099959	39099959	Frame_Shift_Del	C	-	p.V982fs
LIHC	TCGA-DD-A3A0-01	CNTNAP3B	ENST00000276974.6,ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43800863:43801011:43815784:43815988:43816636:43816821,	43815785	43815988	43815911	43815911	Frame_Shift_Del	T	-	p.L222fs
LIHC	TCGA-DD-A3A0-01	CNTNAP3B	ENST00000276974.6,ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43800863:43801011:43815784:43815988:43816636:43816821,	43815785	43815988	43815913	43815913	Frame_Shift_Del	C	-	p.H223fs
LIHC	TCGA-DD-A3A0-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43818040:43818184:43822517:43822779:43828077:43828221,	43822518	43822779	43822669	43822669	Frame_Shift_Del	T	-	p.L408fs
LIHC	TCGA-DD-A3A0-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844268	43844268	Frame_Shift_Del	G	-	p.L534fs
LIHC	TCGA-DD-A3A0-01	PGM5	ENST00000472639.1,ENST00000396396.1	chr9	71094333:71094469:71098780:71098964:71114142:71114201,	71098781	71098964	71098858	71098858	Frame_Shift_Del	C	-	p.S458fs
LIHC	TCGA-DD-A3A0-01	PGM5	ENST00000472639.1,ENST00000396396.1	chr9	71094333:71094469:71098780:71098964:71114142:71114201,	71098781	71098964	71098940	71098940	Frame_Shift_Del	G	-	p.V485fs
LIHC	TCGA-DD-A3A0-01	TJP2	ENST00000348208.4,ENST00000606364.1,ENST00000265384.7,ENST00000539225.1,ENST00000535702.1,ENST00000423935.1,ENST00000453658.2,ENST00000377259.1,ENST00000377245.4	chr9	71827463:71827517:71831254:71831379:71833172:71833275,	71831255	71831379	71831302	71831302	Frame_Shift_Del	C	-	p.N54fs
LIHC	TCGA-DD-A3A0-01	TJP2	ENST00000348208.4,ENST00000265384.7,ENST00000539225.1,ENST00000535702.1,ENST00000453658.2,ENST00000377245.4	chr9	71833172:71833275:71835802:71836412:71840219:71840323,	71835803	71836412	71835877	71835877	Frame_Shift_Del	T	-	p.A139fs
LIHC	TCGA-DD-A3A0-01	PTAR1	ENST00000340434.4,ENST00000377200.5	chr9	72333565:72333600:72338241:72338546:72347054:72347268,	72338242	72338546	72338252	72338252	Frame_Shift_Del	A	-	p.W234fs
LIHC	TCGA-DD-A3A0-01	MAMDC2	ENST00000377182.4	chr9	72785394:72785547:72833252:72833512:72840665:72840750,	72833253	72833512	72833295	72833295	Frame_Shift_Del	A	-	p.Q565fs
LIHC	TCGA-DD-A3A0-01	MAMDC2	ENST00000377182.4	chr9	72833252:72833512:72840665:72840750:72840883:72841886,	72840666	72840750	72840670	72840670	Frame_Shift_Del	T	-	p.I639fs
LIHC	TCGA-DD-A3A0-01	TRPM3	ENST00000377105.1,ENST00000357533.2,ENST00000408909.2,ENST00000396280.5	chr9	73240106:73240247:73240397:73240433:73250126:73250177,	73240398	73240433	73240401	73240401	Frame_Shift_Del	A	-	p.F402fs
LIHC	TCGA-DD-A3A0-01	TMC1	ENST00000297784.5,ENST00000396237.3,ENST00000340019.3,ENST00000486417.1	chr9	75407106:75407268:75420297:75420426:75431058:75431126,	75420298	75420426	75420385	75420385	Frame_Shift_Del	T	-	p.F552fs
LIHC	TCGA-DD-A3A0-01	NMRK1	ENST00000376811.1	chr9	77692405:77692496:77693241:77693498:77698002:77698066,	77693242	77693498	77693277	77693277	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-DD-A3A0-01	PCSK5	ENST00000545128.1,ENST00000376767.3,ENST00000376752.4	chr9	78547294:78547399:78601047:78601161:78638653:78638797,	78601048	78601161	78601074	78601074	Frame_Shift_Del	A	-	p.V108fs
LIHC	TCGA-DD-A3A0-01	PCSK5	ENST00000424854.2,ENST00000545128.1,ENST00000376752.4	chr9	78789901:78790045:78794511:78794614:78796313:78796507,	78794512	78794614	78794611	78794611	Frame_Shift_Del	C	-	p.T667fs
LIHC	TCGA-DD-A3A0-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000423463.2,ENST00000360280.3,ENST00000357409.5	chr9	79910457:79910762:79917830:79917978:79922860:79923014,	79917831	79917978	79917920	79917920	Frame_Shift_Del	G	-	p.W1301fs
LIHC	TCGA-DD-A3A0-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000360280.3,ENST00000357409.5	chr9	79946925:79947029:79952170:79952453:79954431:79954827,	79952171	79952453	79952400	79952400	Frame_Shift_Del	C	-	p.P2110fs
LIHC	TCGA-DD-A3A0-01	VPS13A	ENST00000376636.3,ENST00000360280.3	chr9	79985941:79986065:79996891:79997003:80018151:80018237,	79996892	79997003	79996945	79996945	Frame_Shift_Del	A	-	p.E3044fs
LIHC	TCGA-DD-A3A0-01	PSAT1	ENST00000376588.3	chr9	80932591:80932720:80942966:80943104:80943896:80944370,	80942967	80943104	80942980	80942980	Frame_Shift_Del	C	-	p.P295fs
LIHC	TCGA-DD-A3A0-01	RASEF	ENST00000376447.3	chr9	85605305:85605382:85607820:85607940:85611926:85612041,	85607821	85607940	85607900	85607900	Frame_Shift_Del	T	-	p.N654fs
LIHC	TCGA-DD-A3A0-01	GKAP1	ENST00000376365.3,ENST00000376371.2,ENST00000388782.4	chr9	86414099:86414243:86421216:86421475:86431910:86432042,	86421217	86421475	86421385	86421385	Frame_Shift_Del	A	-	p.F16fs
LIHC	TCGA-DD-A3A0-01	KIF27	ENST00000297814.2	chr9	86485462:86485547:86495211:86495409:86498727:86498933,	86495212	86495409	86495281	86495281	Frame_Shift_Del	T	-	p.K858fs
LIHC	TCGA-DD-A3A0-01	KIF27	ENST00000297814.2,ENST00000413982.1,ENST00000334204.2	chr9	86514575:86514719:86517974:86518933:86523366:86523567,	86517975	86518933	86518550	86518550	Frame_Shift_Del	C	-	p.D295fs
LIHC	TCGA-DD-A3A0-01	SLC28A3	ENST00000537648.1,ENST00000376238.4	chr9	86917114:86917304:86920168:86920260:86924543:86924629,	86920169	86920260	86920183	86920183	Frame_Shift_Del	C	-	p.G107fs
LIHC	TCGA-DD-A3A0-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000337006.4,ENST00000376083.3	chr9	88201745:88201875:88203212:88203393:88204442:88204596,	88203213	88203393	88203313	88203313	Frame_Shift_Del	C	-	p.E935fs
LIHC	TCGA-DD-A3A0-01	AGTPBP1	ENST00000357081.3,ENST00000376109.3,ENST00000376080.1,ENST00000337006.4,ENST00000491784.1,ENST00000376081.4,ENST00000376083.3	chr9	88284399:88284493:88287464:88287596:88292350:88292497,	88287465	88287596	88287539	88287539	Frame_Shift_Del	A	-	p.L165fs
LIHC	TCGA-DD-A3A0-01	NAA35	ENST00000361671.5	chr9	88593181:88593296:88611313:88611492:88618499:88618559,	88611314	88611492	88611444	88611444	Frame_Shift_Del	A	-	p.I336fs
LIHC	TCGA-DD-A3A0-01	DAPK1	ENST00000469640.2,ENST00000408954.3,ENST00000358077.5,ENST00000472284.1,ENST00000489291.1	chr9	90296318:90296541:90301465:90301654:90311921:90312119,	90301466	90301654	90301577	90301577	Frame_Shift_Del	C	-	p.A779fs
LIHC	TCGA-DD-A3A0-01	DAPK1	ENST00000469640.2	chr9	90315031:90315152:90316750:90316825:90317943:90318127,	90316751	90316825	90316760	90316760	Frame_Shift_Del	C	-	p.P961fs
LIHC	TCGA-DD-A3A0-01	CDK20	ENST00000325303.8,ENST00000486228.3	chr9	90584108:90584264:90584710:90584834:90585690:90585812,90584108:90584264:90584710:90584834:90585482:90585545,	90584711	90584834	90584791	90584791	Frame_Shift_Del	G	-	p.L182fs
LIHC	TCGA-DD-A3A0-01	ROR2	ENST00000550066.1,ENST00000375715.1,ENST00000375708.3	chr9	94488822:94489025:94493191:94493437:94495403:94495718,	94493192	94493437	94493227	94493227	Frame_Shift_Del	T	-	p.N383fs
LIHC	TCGA-DD-A3A0-01	CENPP	ENST00000375579.3,ENST00000375576.1,ENST00000375587.3	chr9	95373595:95373675:95374804:95374896:95375300:95377446,	95374805	95374896	95374834	95374834	Frame_Shift_Del	A	-	p.Q225fs
LIHC	TCGA-DD-A3A0-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96019229:96019421:96021212:96021896:96024095:96024389,	96021213	96021896	96021499	96021499	Frame_Shift_Del	C	-	p.A890fs
LIHC	TCGA-DD-A3A0-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000427277.2,ENST00000432730.1	chr9	96030908:96031028:96051069:96051902:96052259:96052329,	96051070	96051902	96051651	96051651	Frame_Shift_Del	C	-	p.P1577fs
LIHC	TCGA-DD-A3A0-01	WNK2	ENST00000395475.2,ENST00000448251.1,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96060134:96060349:96061351:96061543:96070609:96070866,96060134:96060349:96061351:96061543:96062332:96062431,	96061352	96061543	96061375	96061375	Frame_Shift_Del	G	-	p.G2020fs
LIHC	TCGA-DD-A3A0-01	CDC14B	ENST00000412285.2	chr9	99265846:99266071:99277930:99278074:99284787:99284880,99271954:99272071:99277930:99278074:99284787:99284880,	99277931	99278074	99278067	99278067	Frame_Shift_Del	G	-	p.L451fs
LIHC	TCGA-DD-A3A0-01	CCDC180	ENST00000529487.1,ENST00000375202.2,ENST00000494917.2,ENST00000357054.1,ENST00000395220.1	chr9	100075517:100075627:100076674:100076803:100076899:100077010,	100076675	100076803	100076709	100076709	Frame_Shift_Del	T	-	p.L209fs
LIHC	TCGA-DD-A3A0-01	CCDC180	ENST00000357054.1,ENST00000395220.1	chr9	100092814:100093049:100105621:100105845:100109595:100109771,100092814:100093049:100105621:100105845:100116850:100116995,	100105622	100105845	100105782	100105782	Frame_Shift_Del	C	-	p.S857fs
LIHC	TCGA-DD-A3A0-01	CCDC180	ENST00000529487.1,ENST00000375202.2,ENST00000357054.1,ENST00000483504.2,ENST00000395220.1	chr9	100127954:100128021:100128840:100128982:100132203:100132226,	100128841	100128982	100128948	100128948	Frame_Shift_Del	C	-	p.S1429fs
LIHC	TCGA-DD-A3A0-01	NCBP1	ENST00000478100.1,ENST00000375147.3	chr9	100409773:100409843:100410289:100410505:100412784:100412844,	100410290	100410505	100410326	100410326	Frame_Shift_Del	A	-	p.K241fs
LIHC	TCGA-DD-A3A0-01	NANS	ENST00000461452.1,ENST00000210444.5	chr9	100839199:100839299:100840474:100840629:100843097:100843337,	100840475	100840629	100840546	100840546	Frame_Shift_Del	C	-	p.P174fs
LIHC	TCGA-DD-A3A0-01	NANS	ENST00000415280.1	chr9	100839199:100839299:100840343:100840629:100843097:100843337,	100840344	100840629	100840546	100840546	Frame_Shift_Del	C	-	p.P174fs
LIHC	TCGA-DD-A3A0-01	GABBR2	ENST00000477471.1,ENST00000259455.2	chr9	101235511:101235628:101243213:101243279:101258694:101258796,	101243214	101243279	101243277	101243277	Frame_Shift_Del	C	-	p.G245fs
LIHC	TCGA-DD-A3A0-01	STX17	ENST00000525640.1,ENST00000534052.1,ENST00000525847.1,ENST00000259400.6	chr9	102713341:102713567:102722198:102722314:102722386:102722437,	102722199	102722314	102722261	102722261	Frame_Shift_Del	C	-	p.P160fs
LIHC	TCGA-DD-A3A0-01	INVS	ENST00000541287.1,ENST00000262456.2,ENST00000262457.2	chr9	103055228:103055325:103059198:103059428:103060217:103060292,	103059199	103059428	103059420	103059420	Frame_Shift_Del	A	-	p.Q1003fs
LIHC	TCGA-DD-A3A0-01	TEX10	ENST00000374902.4	chr9	103108975:103109688:103111465:103111654:103115053:103115165,	103111466	103111654	103111607	103111607	Frame_Shift_Del	T	-	p.K13fs
LIHC	TCGA-DD-A3A0-01	BAAT	ENST00000395051.3,ENST00000259407.2	chr9	104125204:104125297:104130401:104130604:104133220:104133544,	104130402	104130604	104130584	104130584	Frame_Shift_Del	C	-	p.V163fs
LIHC	TCGA-DD-A3A0-01	SLC44A1	ENST00000374723.1,ENST00000470972.1,ENST00000374724.1,ENST00000374720.3	chr9	108110638:108110732:108118492:108118662:108120624:108120714,	108118493	108118662	108118534	108118534	Frame_Shift_Del	T	-	p.I181fs
LIHC	TCGA-DD-A3A0-01	ZNF462	ENST00000457913.1,ENST00000479166.1,ENST00000441147.2,ENST00000277225.5,ENST00000542028.1,ENST00000374686.2	chr9	109697783:109697902:109701196:109701388:109734285:109734506,	109701197	109701388	109701297	109701297	Frame_Shift_Del	C	-	p.L2112fs
LIHC	TCGA-DD-A3A0-01	KLF4	ENST00000374672.4	chr9	110249308:110249473:110249575:110250548:110251210:110251327,	110249576	110250548	110250354	110250354	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-DD-A3A0-01	FAM206A	ENST00000445175.1	chr9	111697917:111697969:111698587:111698717:111701475:111701552,111697917:111697969:111698587:111698717:111712786:111713024,111696819:111696845:111698587:111698717:111701475:111701552,	111698588	111698717	111698646	111698646	Frame_Shift_Del	A	-	p.K64fs
LIHC	TCGA-DD-A3A0-01	PTPN3	ENST00000374541.2	chr9	112211090:112211135:112216775:112216854:112219452:112219495,	112216776	112216854	112216802	112216802	Frame_Shift_Del	G	-	p.P114fs
LIHC	TCGA-DD-A3A0-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113170017	113170017	Frame_Shift_Del	A	-	p.F2621fs
LIHC	TCGA-DD-A3A0-01	SVEP1	ENST00000401783.2,ENST00000374469.1	chr9	113173342:113174015:113189870:113190038:113191422:113191614,	113189871	113190038	113189887	113189887	Frame_Shift_Del	A	-	p.Y1987fs
LIHC	TCGA-DD-A3A0-01	PTGR1	ENST00000466771.1,ENST00000238248.3,ENST00000374324.1,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114332370:114332489:114337013:114337122:114341075:114341180,	114337014	114337122	114337016	114337016	Frame_Shift_Del	G	-	p.P253fs
LIHC	TCGA-DD-A3A0-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114348277:114348445:114355205:114355262:114356501:114356545,	114355206	114355262	114355220	114355220	Frame_Shift_Del	C	-	p.G65fs
LIHC	TCGA-DD-A3A0-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114904599:114904779:114905750:114905903:114911523:114911679,	114905751	114905903	114905883	114905883	Frame_Shift_Del	A	-	p.S132fs
LIHC	TCGA-DD-A3A0-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114905750:114905903:114911523:114911679:114919779:114919893,	114911524	114911679	114911607	114911607	Frame_Shift_Del	C	-	p.G97fs
LIHC	TCGA-DD-A3A0-01	KIAA1958	ENST00000536272.1,ENST00000374244.3	chr9	115249357:115249398:115336336:115337531:115380150:115380234,	115336337	115337531	115336427	115336427	Frame_Shift_Del	G	-	p.G23fs
LIHC	TCGA-DD-A3A0-01	KIAA1958	ENST00000536272.1,ENST00000374244.3	chr9	115249357:115249398:115336336:115337531:115380150:115380234,	115336337	115337531	115337175	115337175	Frame_Shift_Del	C	-	p.S272fs
LIHC	TCGA-DD-A3A0-01	KIAA1958	ENST00000536272.1,ENST00000374244.3	chr9	115249357:115249398:115336336:115337531:115380150:115380234,	115336337	115337531	115337246	115337246	Frame_Shift_Del	C	-	p.P297fs
LIHC	TCGA-DD-A3A0-01	FKBP15	ENST00000462889.1,ENST00000414250.1,ENST00000238256.3	chr9	115969491:115969576:115973756:115973872:115983470:115983559,	115973757	115973872	115973777	115973777	Frame_Shift_Del	C	-	p.G50fs
LIHC	TCGA-DD-A3A0-01	POLE3	ENST00000374169.3,ENST00000374171.4,ENST00000475080.1	chr9	116171223:116171263:116171889:116172008:116172334:116172420,	116171890	116172008	116171932	116171932	Frame_Shift_Del	C	-	p.E77fs
LIHC	TCGA-DD-A3A0-01	C9orf43	ENST00000288462.4,ENST00000374165.1,ENST00000490544.1	chr9	116175724:116175924:116176038:116176174:116181387:116181445,	116176039	116176174	116176057	116176057	Frame_Shift_Del	C	-	p.T57fs
LIHC	TCGA-DD-A3A0-01	RGS3	ENST00000394646.3,ENST00000478599.1,ENST00000343817.5,ENST00000317613.6,ENST00000374140.2,ENST00000350696.5,ENST00000374136.1	chr9	116270820:116270860:116276737:116276934:116279820:116279904,	116276738	116276934	116276837	116276837	Frame_Shift_Del	A	-	p.Q526fs
LIHC	TCGA-DD-A3A0-01	AMBP	ENST00000265132.3	chr9	116822406:116822550:116823204:116823378:116823703:116823871,	116823205	116823378	116823290	116823290	Frame_Shift_Del	G	-	p.L314fs
LIHC	TCGA-DD-A3A0-01	KIF12	ENST00000473174.1,ENST00000374118.3,ENST00000468460.1	chr9	116856632:116856735:116857302:116857407:116857493:116857612,	116857303	116857407	116857320	116857320	Frame_Shift_Del	G	-	p.R230fs
LIHC	TCGA-DD-A3A0-01	AKNA	ENST00000223791.3,ENST00000374075.5,ENST00000312033.3,ENST00000374088.3,ENST00000307564.4	chr9	117130718:117130875:117136372:117136447:117138745:117139244,	117136373	117136447	117136378	117136378	Frame_Shift_Del	C	-	p.A471fs
LIHC	TCGA-DD-A3A0-01	TNC	ENST00000341037.4	chr9	117822133:117822281:117826074:117826347:117826925:117827191,	117826075	117826347	117826248	117826248	Frame_Shift_Del	A	-	p.F1196fs
LIHC	TCGA-DD-A3A0-01	TNC	ENST00000535648.1,ENST00000350763.4,ENST00000345230.3,ENST00000346706.3	chr9	117848142:117849552:117852840:117853433:117880260:117880478,	117852841	117853433	117853078	117853078	Frame_Shift_Del	C	-	p.E74fs
LIHC	TCGA-DD-A3A0-01	PAPPA	ENST00000328252.3	chr9	118969734:118969880:118973917:118974211:118982215:118982408,	118973918	118974211	118974110	118974110	Frame_Shift_Del	C	-	p.A606fs
LIHC	TCGA-DD-A3A0-01	CDK5RAP2	ENST00000359309.3	chr9	123202067:123202250:123210172:123210404:123215733:123216151,	123210173	123210404	123210278	123210278	Frame_Shift_Del	C	-	p.E974fs
LIHC	TCGA-DD-A3A0-01	FBXW2	ENST00000474117.1,ENST00000608872.1	chr9	123540628:123540823:123550046:123550556:123555426:123555535,	123550047	123550556	123550307	123550307	Frame_Shift_Del	A	-	p.L78fs
LIHC	TCGA-DD-A3A0-01	FBXW2	ENST00000453291.1	chr9	123540628:123540823:123550046:123550464:123555426:123555535,	123550047	123550464	123550307	123550307	Frame_Shift_Del	A	-	p.L78fs
LIHC	TCGA-DD-A3A0-01	TRAF1	ENST00000373887.3,ENST00000540010.1	chr9	123676512:123676578:123685982:123686070:123688213:123688579,	123685983	123686070	123686046	123686046	Frame_Shift_Del	G	-	p.P55fs
LIHC	TCGA-DD-A3A0-01	TRAF1	ENST00000540010.1	chr9	123685982:123686070:123688213:123688579:123688827:123688966,	123688214	123688579	123688294	123688294	Frame_Shift_Del	A	-	p.F20fs
LIHC	TCGA-DD-A3A0-01	C5	ENST00000223642.1	chr9	123734207:123734270:123737056:123737209:123738977:123739183,	123737057	123737209	123737069	123737069	Frame_Shift_Del	C	-	p.G1335fs
LIHC	TCGA-DD-A3A0-01	CNTRL	ENST00000373865.2,ENST00000373855.1,ENST00000238341.5	chr9	123858699:123858841:123860663:123860850:123870079:123870273,	123860664	123860850	123860688	123860688	Frame_Shift_Del	C	-	p.P216fs
LIHC	TCGA-DD-A3A0-01	CNTRL	ENST00000373855.1,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123910949:123911139:123912447:123912761:123914762:123914971,	123912448	123912761	123912510	123912510	Frame_Shift_Del	T	-	p.F1238fs
LIHC	TCGA-DD-A3A0-01	CNTRL	ENST00000431571.1	chr9	123910949:123911139:123912447:123912583:123914762:123914971,	123912448	123912583	123912510	123912510	Frame_Shift_Del	T	-	p.F1238fs
LIHC	TCGA-DD-A3A0-01	RAB14	ENST00000373840.4,ENST00000451303.1	chr9	123949230:123949297:123952831:123953009:123954448:123954502,	123952832	123953009	123952938	123952938	Frame_Shift_Del	T	-	p.I60fs
LIHC	TCGA-DD-A3A0-01	MRRF	ENST00000441707.1,ENST00000489572.1,ENST00000344641.3,ENST00000394315.3,ENST00000373727.1,ENST00000467864.1,ENST00000546115.1,ENST00000373724.1,ENST00000373729.1,ENST00000373730.3,ENST00000373728.2,ENST00000470366.1,ENST00000373723.5	chr9	125033231:125033354:125042721:125042877:125047447:125047566,	125042722	125042877	125042730	125042730	Frame_Shift_Del	A	-	p.K65fs
LIHC	TCGA-DD-A3A0-01	MRRF	ENST00000344641.3,ENST00000394315.3,ENST00000373729.1,ENST00000373723.5	chr9	125033231:125033354:125047447:125047566:125054027:125054077,125042721:125042877:125047447:125047566:125054027:125054077,	125047448	125047566	125047494	125047494	Frame_Shift_Del	T	-	p.A129fs
LIHC	TCGA-DD-A3A0-01	MRRF	ENST00000489572.1,ENST00000344641.3,ENST00000373729.1,ENST00000297908.3,ENST00000470366.1	chr9	125054034:125054119:125075505:125075665:125084818:125084957,	125075506	125075665	125075615	125075615	Frame_Shift_Del	A	-	p.K221fs
LIHC	TCGA-DD-A3A0-01	PDCL	ENST00000259467.4	chr9	125585294:125585476:125588894:125589071:125590749:125590910,	125588895	125589071	125589036	125589036	Frame_Shift_Del	C	-	p.E11fs
LIHC	TCGA-DD-A3A0-01	RC3H2	ENST00000423239.2,ENST00000357244.2,ENST00000373670.1,ENST00000498479.1	chr9	125620947:125621381:125622195:125622410:125627627:125627820,	125622196	125622410	125622311	125622311	Frame_Shift_Del	T	-	p.K578fs
LIHC	TCGA-DD-A3A0-01	STRBP	ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2	chr9	125898319:125898460:125898659:125898794:125901807:125901966,	125898660	125898794	125898728	125898728	Frame_Shift_Del	T	-	p.R523fs
LIHC	TCGA-DD-A3A0-01	NEK6	ENST00000545174.1,ENST00000373603.1,ENST00000394199.2,ENST00000546191.1,ENST00000373600.3,ENST00000540326.1,ENST00000539416.1,ENST00000454453.1,ENST00000320246.5	chr9	127089616:127089724:127101849:127101944:127109987:127110076,	127101850	127101944	127101922	127101922	Frame_Shift_Del	C	-	p.S266fs
LIHC	TCGA-DD-A3A0-01	NR5A1	ENST00000373588.4	chr9	127255356:127255428:127262368:127262994:127265357:127265499,	127262369	127262994	127262598	127262598	Frame_Shift_Del	G	-	p.P214fs
LIHC	TCGA-DD-A3A0-01	GOLGA1	ENST00000485337.1,ENST00000373555.4,ENST00000475407.1	chr9	127652667:127652757:127660827:127660923:127661607:127661712,	127660828	127660923	127660904	127660904	Frame_Shift_Del	T	-	p.N444fs
LIHC	TCGA-DD-A3A0-01	RABEPK	ENST00000394125.4,ENST00000416065.1,ENST00000373538.3	chr9	127969842:127970000:127975648:127975801:127982605:127982676,127969842:127970000:127975648:127975801:127982817:127982937,	127975649	127975801	127975680	127975680	Frame_Shift_Del	G	-	p.K81fs
LIHC	TCGA-DD-A3A0-01	GAPVD1	ENST00000467750.1,ENST00000497580.1,ENST00000265956.4,ENST00000495955.1,ENST00000394084.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128061200:128061385:128064261:128065105:128067341:128067428,	128064262	128065105	128064984	128064984	Frame_Shift_Del	G	-	p.R303fs
LIHC	TCGA-DD-A3A0-01	MAPKAP1	ENST00000373503.3	chr9	128419947:128420078:128432096:128432186:128469249:128469456,	128432097	128432186	128432132	128432132	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A3A0-01	GARNL3	ENST00000373387.4,ENST00000373386.2,ENST00000435213.2,ENST00000478696.1,ENST00000314904.5	chr9	130117634:130117751:130119497:130119656:130127578:130127645,	130119498	130119656	130119625	130119625	Frame_Shift_Del	C	-	p.A688fs
LIHC	TCGA-DD-A3A0-01	SLC2A8	ENST00000373371.3,ENST00000451404.1,ENST00000423934.1,ENST00000373360.3,ENST00000419917.1,ENST00000430147.1	chr9	130162242:130162285:130164835:130165032:130166016:130166070,130162242:130162285:130164835:130165032:130165938:130166026,	130164836	130165032	130165021	130165021	Frame_Shift_Del	G	-	p.G238fs
LIHC	TCGA-DD-A3A0-01	SLC2A8	ENST00000373352.1	chr9	130164835:130165032:130165938:130166082:130166237:130166346,130162242:130162285:130165938:130166082:130166237:130166346,	130165939	130166082	130165966	130165966	Frame_Shift_Del	C	-	p.P251fs
LIHC	TCGA-DD-A3A0-01	SLC2A8	ENST00000373360.3	chr9	130166301:130166346:130167096:130167270:130167698:130167726,130166301:130166346:130167096:130167270:130169390:130169570,	130167097	130167270	130167141	130167141	Frame_Shift_Del	A	-	p.K341fs
LIHC	TCGA-DD-A3A0-01	LRSAM1	ENST00000373324.4,ENST00000323301.4,ENST00000300417.6,ENST00000373322.1,ENST00000483302.1	chr9	130255080:130255176:130257598:130257697:130258242:130258324,	130257599	130257697	130257614	130257614	Frame_Shift_Del	A	-	p.K539fs
LIHC	TCGA-DD-A3A0-01	PTRH1	ENST00000419060.1	chr9	130477253:130477473:130477822:130479238:130487015:130487152,	130477823	130479238	130477839	130477839	Frame_Shift_Del	G	-	p.P27fs
LIHC	TCGA-DD-A3A0-01	PTRH1	ENST00000419060.1	chr9	130477253:130477473:130477822:130479238:130487015:130487152,	130477823	130479238	130477899	130477899	Frame_Shift_Del	A	-	p.L7fs
LIHC	TCGA-DD-A3A0-01	FPGS	ENST00000460181.1,ENST00000393706.2,ENST00000489522.1,ENST00000488506.1,ENST00000488307.1,ENST00000373247.2,ENST00000373225.3,ENST00000467826.1	chr9	130570542:130570590:130570836:130570984:130571078:130571161,	130570837	130570984	130570879	130570879	Frame_Shift_Del	G	-	p.G240fs
LIHC	TCGA-DD-A3A0-01	FPGS	ENST00000460181.1,ENST00000393706.2,ENST00000489522.1,ENST00000488506.1,ENST00000488307.1,ENST00000373247.2,ENST00000373225.3,ENST00000467826.1	chr9	130570542:130570590:130570836:130570984:130571078:130571161,	130570837	130570984	130570895	130570895	Frame_Shift_Del	C	-	p.T244fs
LIHC	TCGA-DD-A3A0-01	AK1	ENST00000373176.1,ENST00000550992.1,ENST00000223836.10,ENST00000373156.1	chr9	130634101:130634218:130634968:130635132:130635304:130635333,	130634969	130635132	130635015	130635015	Frame_Shift_Del	C	-	p.G54fs
LIHC	TCGA-DD-A3A0-01	ST6GALNAC6	ENST00000485320.1	chr9	130649813:130649870:130652934:130653322:130656790:130656908,	130652935	130653322	130653063	130653063	Frame_Shift_Del	G	-	p.P186fs
LIHC	TCGA-DD-A3A0-01	ST6GALNAC6	ENST00000373142.1,ENST00000373141.1,ENST00000373144.3,ENST00000480417.1,ENST00000291839.5,ENST00000373146.1	chr9	130649813:130649870:130652915:130653322:130656790:130656908,	130652916	130653322	130653063	130653063	Frame_Shift_Del	G	-	p.P186fs
LIHC	TCGA-DD-A3A0-01	FAM102A	ENST00000479828.1,ENST00000373095.1	chr9	130712701:130712818:130715853:130715883:130716083:130716204,	130715854	130715883	130715859	130715859	Frame_Shift_Del	A	-	p.S98fs
LIHC	TCGA-DD-A3A0-01	SLC25A25	ENST00000373069.5,ENST00000373064.5,ENST00000373066.5,ENST00000433501.1,ENST00000432073.2,ENST00000373068.2	chr9	130864648:130864760:130865959:130866118:130868007:130868160,	130865960	130866118	130865963	130865963	Frame_Shift_Del	T	-	p.F196fs
LIHC	TCGA-DD-A3A0-01	SLC25A25	ENST00000373069.5,ENST00000373064.5,ENST00000373066.5,ENST00000433501.1,ENST00000432073.2,ENST00000373068.2	chr9	130866000:130866118:130868007:130868160:130868428:130868536,	130868008	130868160	130868116	130868116	Frame_Shift_Del	A	-	p.K284fs
LIHC	TCGA-DD-A3A0-01	CIZ1	ENST00000357558.5,ENST00000476239.1,ENST00000393608.1,ENST00000372938.5,ENST00000415526.1,ENST00000541172.1,ENST00000277465.4,ENST00000538431.1,ENST00000372948.3,ENST00000325721.8,ENST00000372954.1	chr9	130939866:130940042:130940647:130940769:130940987:130941075,	130940648	130940769	130940652	130940652	Frame_Shift_Del	G	-	p.P539fs
LIHC	TCGA-DD-A3A0-01	ODF2	ENST00000469582.2,ENST00000351030.3,ENST00000372807.5	chr9	131221845:131221936:131223220:131223346:131231461:131231513,131222837:131222945:131223220:131223346:131231461:131231513,	131223221	131223346	131223302	131223302	Frame_Shift_Del	C	-	p.P70fs
LIHC	TCGA-DD-A3A0-01	GLE1	ENST00000309971.4,ENST00000372770.4,ENST00000539582.1	chr9	131289457:131289570:131289734:131289804:131295791:131295928,	131289735	131289804	131289738	131289738	Frame_Shift_Del	A	-	p.K417fs
LIHC	TCGA-DD-A3A0-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131329016:131329256:131331050:131331176:131336953:131337094,	131331051	131331176	131331150	131331150	Frame_Shift_Del	G	-	p.G113fs
LIHC	TCGA-DD-A3A0-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131339407:131339552:131339630:131339785:131340388:131340524,	131339631	131339785	131339671	131339671	Frame_Shift_Del	C	-	p.S324fs
LIHC	TCGA-DD-A3A0-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131346560:131346804:131346999:131347122:131348026:131348244,	131347000	131347122	131347014	131347014	Frame_Shift_Del	G	-	p.G818fs
LIHC	TCGA-DD-A3A0-01	PKN3	ENST00000485301.1,ENST00000291906.4	chr9	131480603:131480666:131480827:131480904:131481964:131482107,	131480828	131480904	131480860	131480860	Frame_Shift_Del	C	-	p.A694fs
LIHC	TCGA-DD-A3A0-01	ZDHHC12	ENST00000452105.1,ENST00000372672.2	chr9	131484287:131484365:131484716:131484853:131486272:131486385,	131484717	131484853	131484827	131484827	Frame_Shift_Del	C	-	p.E57fs
LIHC	TCGA-DD-A3A0-01	ZDHHC12	ENST00000406904.2	chr9	131484287:131484365:131484716:131485018:131486272:131486385,	131484717	131485018	131484827	131484827	Frame_Shift_Del	C	-	p.E57fs
LIHC	TCGA-DD-A3A0-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131670151	131670151	Frame_Shift_Del	G	-	p.E236fs
LIHC	TCGA-DD-A3A0-01	PHYHD1	ENST00000412476.1	chr9	131698861:131698924:131702647:131702776:131702877:131702988,131700035:131700057:131702647:131702776:131702877:131702988,131700035:131700223:131702647:131702776:131702877:131702988,	131702648	131702776	131702774	131702774	Frame_Shift_Del	C	-	p.T195fs
LIHC	TCGA-DD-A3A0-01	NUP188	ENST00000372577.2	chr9	131743542:131743669:131744827:131744980:131745180:131745307,	131744828	131744980	131744868	131744868	Frame_Shift_Del	C	-	p.G519fs
LIHC	TCGA-DD-A3A0-01	NUP188	ENST00000372577.2,ENST00000477069.1,ENST00000491502.1	chr9	131749087:131749154:131749867:131749996:131750325:131750465,	131749868	131749996	131749973	131749973	Frame_Shift_Del	G	-	p.M790fs
LIHC	TCGA-DD-A3A0-01	ASB6	ENST00000277458.4,ENST00000450050.2	chr9	132400851:132400938:132401480:132401589:132401680:132401787,	132401481	132401589	132401549	132401549	Frame_Shift_Del	G	-	p.P148fs
LIHC	TCGA-DD-A3A0-01	FNBP1	ENST00000449089.2,ENST00000355681.3,ENST00000446176.2,ENST00000420781.1,ENST00000443566.2	chr9	132658116:132658275:132662243:132662380:132662704:132662811,	132662244	132662380	132662378	132662378	Frame_Shift_Del	G	-	p.P509fs
LIHC	TCGA-DD-A3A0-01	GPR107	ENST00000372406.1,ENST00000372410.3,ENST00000347136.6	chr9	132889761:132889845:132890918:132891040:132897303:132899179,	132890919	132891040	132891032	132891032	Frame_Shift_Del	G	-	p.M566fs
LIHC	TCGA-DD-A3A0-01	HMCN2	ENST00000428715.1	chr9	133285957:133286039:133294158:133294428:133297963:133298113,	133294159	133294428	133294182	133294182	Frame_Shift_Del	C	-	p.P39fs
LIHC	TCGA-DD-A3A0-01	ASS1	ENST00000443588.1	chr9	133329691:133329760:133333787:133333976:133339497:133339509,133329691:133329760:133333787:133333976:133342111:133342186,	133333788	133333976	133333940	133333940	Frame_Shift_Del	G	-	p.E109fs
LIHC	TCGA-DD-A3A0-01	ASS1	ENST00000443588.1	chr9	133329691:133329760:133333787:133333976:133339497:133339509,133329691:133329760:133333787:133333976:133342111:133342186,	133333788	133333976	133333962	133333962	Frame_Shift_Del	G	-	p.G117fs
LIHC	TCGA-DD-A3A0-01	NUP214	ENST00000451030.1,ENST00000359428.5,ENST00000411637.2	chr9	134010284:134010391:134011326:134011393:134014667:134014736,	134011327	134011393	134011383	134011383	Frame_Shift_Del	A	-	p.Q332fs
LIHC	TCGA-DD-A3A0-01	NUP214	ENST00000451030.1,ENST00000525980.1,ENST00000359428.5,ENST00000531929.1,ENST00000411637.2	chr9	134053697:134053797:134062675:134062751:134064439:134064518,	134062676	134062751	134062707	134062707	Frame_Shift_Del	C	-	p.P1151fs
LIHC	TCGA-DD-A3A0-01	NUP214	ENST00000451030.1,ENST00000525980.1,ENST00000359428.5,ENST00000531929.1,ENST00000411637.2	chr9	134053697:134053797:134062675:134062751:134064439:134064518,	134062676	134062751	134062712	134062712	Frame_Shift_Del	C	-	p.H1152fs
LIHC	TCGA-DD-A3A0-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351189	134351189	Frame_Shift_Del	C	-	p.P1225fs
LIHC	TCGA-DD-A3A0-01	POMT1	ENST00000419118.2	chr9	134379575:134379727:134381789:134381840:134382754:134382901,134378395:134378460:134381789:134381840:134384297:134384409,	134381790	134381840	134381815	134381815	Frame_Shift_Del	T	-	p.N85fs
LIHC	TCGA-DD-A3A0-01	POMT1	ENST00000448212.1,ENST00000402686.3,ENST00000441334.1,ENST00000430619.1,ENST00000415075.1,ENST00000404875.2,ENST00000372228.3,ENST00000423007.1,ENST00000341012.7	chr9	134381789:134381840:134382754:134382901:134384297:134384409,	134382755	134382901	134382856	134382856	Frame_Shift_Del	T	-	p.F128fs
LIHC	TCGA-DD-A3A0-01	POMT1	ENST00000354713.4	chr9	134381789:134381840:134382737:134382901:134384297:134384409,	134382738	134382901	134382856	134382856	Frame_Shift_Del	T	-	p.F128fs
LIHC	TCGA-DD-A3A0-01	NTNG2	ENST00000393228.4,ENST00000360670.3,ENST00000372179.3	chr9	135037333:135037626:135041735:135042431:135073352:135073996,	135041736	135042431	135042407	135042407	Frame_Shift_Del	C	-	p.D63fs
LIHC	TCGA-DD-A3A0-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203230	135203230	Frame_Shift_Del	C	-	p.G1252fs
LIHC	TCGA-DD-A3A0-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203434	135203434	Frame_Shift_Del	C	-	p.G1184fs
LIHC	TCGA-DD-A3A0-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135205743	135205743	Frame_Shift_Del	A	-	p.F414fs
LIHC	TCGA-DD-A3A0-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135206663:135206835:135209994:135210114:135211682:135211902,	135209995	135210114	135210004	135210004	Frame_Shift_Del	C	-	p.E277fs
LIHC	TCGA-DD-A3A0-01	GTF3C5	ENST00000372099.6,ENST00000372097.5	chr9	135930098:135930196:135931398:135931481:135932152:135932295,	135931399	135931481	135931418	135931418	Frame_Shift_Del	G	-	p.R396fs
LIHC	TCGA-DD-A3A0-01	RALGDS	ENST00000493438.1	chr9	135975654:135975769:135975882:135977149:135977324:135977526,	135975883	135977149	135977121	135977121	Frame_Shift_Del	G	-	p.P692fs
LIHC	TCGA-DD-A3A0-01	RALGDS	ENST00000372062.3,ENST00000393160.3,ENST00000372047.3,ENST00000372050.3,ENST00000542690.1,ENST00000393157.3	chr9	135975654:135975769:135976906:135977149:135977324:135977526,	135976907	135977149	135977121	135977121	Frame_Shift_Del	G	-	p.P692fs
LIHC	TCGA-DD-A3A0-01	RALGDS	ENST00000372062.3,ENST00000460587.1,ENST00000393160.3,ENST00000372047.3,ENST00000372050.3,ENST00000469972.1,ENST00000542690.1,ENST00000493438.1,ENST00000393157.3,ENST00000482648.1	chr9	135982031:135982135:135982471:135982687:135983374:135983405,	135982472	135982687	135982685	135982685	Frame_Shift_Del	T	-	p.E345fs
LIHC	TCGA-DD-A3A0-01	OBP2B	ENST00000372032.2,ENST00000372034.3,ENST00000461961.1	chr9	136081701:136081803:136082612:136082723:136083519:136083578,	136082613	136082723	136082717	136082717	Frame_Shift_Del	C	-	p.G95fs
LIHC	TCGA-DD-A3A0-01	SURF1	ENST00000371974.3	chr9	136219548:136219621:136220603:136220795:136221513:136221596,	136220604	136220795	136220778	136220778	Frame_Shift_Del	T	-	p.N114fs
LIHC	TCGA-DD-A3A0-01	SURF2	ENST00000371964.4	chr9	136226825:136227005:136227140:136227310:136227931:136228045,	136227141	136227310	136227149	136227149	Frame_Shift_Del	T	-	p.F176fs
LIHC	TCGA-DD-A3A0-01	SURF4	ENST00000545297.1	chr9	136230430:136230635:136232860:136232904:136233474:136233551,	136232861	136232904	136232867	136232867	Frame_Shift_Del	A	-	p.L117fs
LIHC	TCGA-DD-A3A0-01	ADAMTS13	ENST00000371929.3,ENST00000371916.1,ENST00000474918.1,ENST00000495234.1,ENST00000536611.1,ENST00000355699.2,ENST00000356589.2	chr9	136302868:136303017:136303365:136303486:136304486:136304567,	136303366	136303486	136303464	136303464	Frame_Shift_Del	T	-	p.S561fs
LIHC	TCGA-DD-A3A0-01	SLC2A6	ENST00000371899.4	chr9	136338226:136338372:136338536:136338722:136339101:136339210,	136338537	136338722	136338688	136338688	Frame_Shift_Del	C	-	p.G357fs
LIHC	TCGA-DD-A3A0-01	SARDH	ENST00000422262.2,ENST00000371872.4,ENST00000371868.1,ENST00000439388.1	chr9	136536656:136536819:136550314:136550408:136555501:136555649,	136550315	136550408	136550355	136550355	Frame_Shift_Del	G	-	p.P708fs
LIHC	TCGA-DD-A3A0-01	RXRA	ENST00000481739.1	chr9	137218425:137218505:137293477:137293728:137299994:137300145,	137293478	137293728	137293658	137293658	Frame_Shift_Del	C	-	p.S70fs
LIHC	TCGA-DD-A3A0-01	KCNT1	ENST00000488444.2,ENST00000490355.2,ENST00000263604.3	chr9	138606399:138606566:138634617:138634659:138641943:138642023,138628478:138628633:138634617:138634659:138641943:138642023,	138634618	138634659	138634633	138634633	Frame_Shift_Del	T	-	p.D57fs
LIHC	TCGA-DD-A3A0-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138714658	138714658	Frame_Shift_Del	C	-	p.E617fs
LIHC	TCGA-DD-A3A0-01	QSOX2	ENST00000358701.5	chr9	139110875:139111010:139113641:139113787:139115608:139115699,	139113642	139113787	139113745	139113745	Frame_Shift_Del	G	-	p.R240fs
LIHC	TCGA-DD-A3A0-01	PMPCA	ENST00000371717.3	chr9	139306941:139307021:139307261:139307344:139310742:139310843,139306941:139307021:139307261:139307344:139309004:139309099,	139307262	139307344	139307308	139307308	Frame_Shift_Del	A	-	p.E134fs
LIHC	TCGA-DD-A3A0-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1,ENST00000313084.5,ENST00000277537.6	chr9	139342020:139342132:139342304:139342361:139342535:139342613,	139342305	139342361	139342331	139342331	Frame_Shift_Del	C	-	p.V2141fs
LIHC	TCGA-DD-A3A0-01	NOTCH1	ENST00000277541.6	chr9	139412203:139412389:139412588:139412744:139413042:139413276,	139412589	139412744	139412647	139412647	Frame_Shift_Del	G	-	p.T399fs
LIHC	TCGA-DD-A3A0-01	LCN15	ENST00000316144.5,ENST00000482511.1	chr9	139656238:139656305:139656639:139656741:139657808:139657919,	139656640	139656741	139656682	139656682	Frame_Shift_Del	G	-	p.L160fs
LIHC	TCGA-DD-A3A0-01	MAMDC4	ENST00000317446.2,ENST00000445819.1	chr9	139748990:139749128:139749213:139749302:139749388:139749562,	139749214	139749302	139749266	139749266	Frame_Shift_Del	C	-	p.S329fs
LIHC	TCGA-DD-A3A0-01	MAMDC4	ENST00000317446.2,ENST00000485732.1,ENST00000445819.1	chr9	139749388:139749562:139749705:139749790:139749882:139750071,	139749706	139749790	139749732	139749732	Frame_Shift_Del	G	-	p.P408fs
LIHC	TCGA-DD-A3A0-01	MAMDC4	ENST00000479475.1	chr9	139752851:139752998:139753170:139753584:139753660:139753769,	139753171	139753584	139753286	139753286	Frame_Shift_Del	G	-	p.M1058fs
LIHC	TCGA-DD-A3A0-01	MAMDC4	ENST00000317446.2,ENST00000485732.1,ENST00000445819.1	chr9	139752851:139752998:139753170:139753305:139753456:139753584,	139753171	139753305	139753286	139753286	Frame_Shift_Del	G	-	p.M1058fs
LIHC	TCGA-DD-A3A0-01	TRAF2	ENST00000359662.3	chr9	139794045:139794124:139794873:139795128:139802521:139802670,	139794874	139795128	139795075	139795075	Frame_Shift_Del	G	-	p.G157fs
LIHC	TCGA-DD-A3A0-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944739:139944990:139945353:139945581:139945662:139945822,	139945354	139945581	139945527	139945527	Frame_Shift_Del	C	-	p.D201fs
LIHC	TCGA-DD-A3A0-01	MAN1B1	ENST00000371589.4,ENST00000474902.1,ENST00000535144.1,ENST00000544448.1	chr9	139995935:139996124:140000576:140000767:140001140:140001261,	140000577	140000767	140000656	140000656	Frame_Shift_Del	C	-	p.T445fs
LIHC	TCGA-DD-A3A0-01	NDOR1	ENST00000344894.5,ENST00000458322.2,ENST00000371521.4	chr9	140108231:140108330:140108418:140108520:140108655:140108865,	140108419	140108520	140108437	140108437	Frame_Shift_Del	C	-	p.D143fs
LIHC	TCGA-DD-A3A0-01	EXD3	ENST00000342129.4,ENST00000340951.4,ENST00000490886.1,ENST00000479452.1	chr9	140267877:140268051:140277764:140277829:140289754:140289856,	140277765	140277829	140277818	140277818	Frame_Shift_Del	G	-	p.L26fs
LIHC	TCGA-DD-A3A0-01	ZMYND19	ENST00000298585.2	chr9	140476530:140477138:140477434:140477615:140481418:140481559,	140477435	140477615	140477541	140477541	Frame_Shift_Del	T	-	p.N145fs
LIHC	TCGA-DD-A3A0-01	EHMT1	ENST00000462484.1,ENST00000334856.6,ENST00000460843.1	chr9	140513464:140513501:140611077:140611634:140622800:140622981,140605418:140605482:140611077:140611634:140622800:140622981,	140611078	140611634	140611309	140611309	Frame_Shift_Del	A	-	p.Q106fs
LIHC	TCGA-DD-A3A0-01	ZMYND11	ENST00000381607.4,ENST00000403354.1,ENST00000397959.3,ENST00000439456.1,ENST00000602682.1	chr10	225952:226068:255828:255988:267134:267296,225952:226068:255828:255988:282777:282855,	255829	255988	255940	255940	Frame_Shift_Del	A	-	p.S76fs
LIHC	TCGA-DD-A3A0-01	GTPBP4	ENST00000491635.1,ENST00000545048.1,ENST00000360803.4,ENST00000538293.1	chr10	1046616:1046808:1046887:1046953:1051757:1051847,	1046888	1046953	1046909	1046909	Frame_Shift_Del	A	-	p.K290fs
LIHC	TCGA-DD-A3A0-01	WDR37	ENST00000263150.4,ENST00000482165.1,ENST00000358220.1	chr10	1170157:1170292:1170849:1170964:1175152:1175192,	1170850	1170964	1170886	1170886	Frame_Shift_Del	C	-	p.L425fs
LIHC	TCGA-DD-A3A0-01	PITRM1	ENST00000451104.2,ENST00000224949.4,ENST00000380989.2	chr10	3201105:3201234:3202039:3202128:3202395:3202522,	3202040	3202128	3202081	3202081	Frame_Shift_Del	G	-	p.P322fs
LIHC	TCGA-DD-A3A0-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000602997.1,ENST00000605781.1,ENST00000380554.3	chr10	5138601:5138769:5139625:5139742:5140993:5141071,	5139626	5139742	5139637	5139637	Frame_Shift_Del	T	-	p.T88fs
LIHC	TCGA-DD-A3A0-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000602997.1,ENST00000605781.1,ENST00000380554.3	chr10	5138601:5138769:5139625:5139742:5140993:5141071,	5139626	5139742	5139685	5139685	Frame_Shift_Del	G	-	p.K105fs
LIHC	TCGA-DD-A3A0-01	NET1	ENST00000355029.4,ENST00000380359.3	chr10	5494381:5494488:5494820:5494883:5495212:5495309,	5494821	5494883	5494831	5494831	Frame_Shift_Del	A	-	p.E181fs
LIHC	TCGA-DD-A3A0-01	NET1	ENST00000542715.1	chr10	5494381:5494488:5494787:5494883:5495212:5495309,	5494788	5494883	5494831	5494831	Frame_Shift_Del	A	-	p.E181fs
LIHC	TCGA-DD-A3A0-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5791495	5791495	Frame_Shift_Del	C	-	p.S2037fs
LIHC	TCGA-DD-A3A0-01	FAM208B	ENST00000328090.5	chr10	5803252:5803434:5804494:5804609:5804991:5805703,	5804495	5804609	5804538	5804538	Frame_Shift_Del	C	-	p.I2406fs
LIHC	TCGA-DD-A3A0-01	GDI2	ENST00000380132.4,ENST00000609712.1	chr10	5842560:5842668:5853836:5853919:5855176:5855350,	5853837	5853919	5853860	5853860	Frame_Shift_Del	A	-	p.Y12fs
LIHC	TCGA-DD-A3A0-01	ANKRD16	ENST00000380094.5	chr10	5903579:5904654:5920059:5920250:5922260:5922339,	5920060	5920250	5920121	5920121	Frame_Shift_Del	T	-	p.Q353fs
LIHC	TCGA-DD-A3A0-01	IL15RA	ENST00000379972.2	chr10	6005705:6005804:6008107:6008302:6019739:6019798,6005705:6005804:6008107:6008302:6019367:6019455,6002357:6002530:6008107:6008302:6019367:6019455,6002357:6002530:6008107:6008302:6019739:6019798,6002329:6002431:6008107:6008302:6019739:6019798,	6008108	6008302	6008124	6008124	Frame_Shift_Del	G	-	p.P53fs
LIHC	TCGA-DD-A3A0-01	IL15RA	ENST00000379972.2	chr10	6005705:6005804:6008107:6008302:6019739:6019798,6005705:6005804:6008107:6008302:6019367:6019455,6002357:6002530:6008107:6008302:6019367:6019455,6002357:6002530:6008107:6008302:6019739:6019798,6002329:6002431:6008107:6008302:6019739:6019798,	6008108	6008302	6008283	6008283	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-DD-A3A0-01	IL2RA	ENST00000379954.1,ENST00000379959.3,ENST00000256876.6	chr10	6060015:6060082:6061390:6061462:6061832:6061904,	6061391	6061462	6061458	6061458	Frame_Shift_Del	A	-	p.F220fs
LIHC	TCGA-DD-A3A0-01	RBM17	ENST00000432931.1	chr10	6131033:6131156:6139010:6139151:6143233:6143350,	6139011	6139151	6139070	6139070	Frame_Shift_Del	A	-	p.S14fs
LIHC	TCGA-DD-A3A0-01	PRKCQ	ENST00000263125.5,ENST00000397176.2	chr10	6540357:6540520:6549397:6549458:6552956:6553154,	6549398	6549458	6549439	6549439	Frame_Shift_Del	C	-	p.G113fs
LIHC	TCGA-DD-A3A0-01	SFMBT2	ENST00000361972.4,ENST00000397167.1	chr10	7230585:7230695:7239509:7239649:7242375:7242446,	7239510	7239649	7239586	7239586	Frame_Shift_Del	G	-	p.P541fs
LIHC	TCGA-DD-A3A0-01	ITIH5	ENST00000446830.2,ENST00000298441.6,ENST00000256861.6	chr10	7605078:7605347:7607992:7608370:7611630:7611747,	7607993	7608370	7608076	7608076	Frame_Shift_Del	T	-	p.K815fs
LIHC	TCGA-DD-A3A0-01	ITIH5	ENST00000446830.2,ENST00000298441.6,ENST00000256861.6	chr10	7608220:7608370:7611630:7611747:7615104:7615158,	7611631	7611747	7611667	7611667	Frame_Shift_Del	C	-	p.D705fs
LIHC	TCGA-DD-A3A0-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7762818:7762926:7763611:7763740:7765413:7765530,	7763612	7763740	7763729	7763729	Frame_Shift_Del	G	-	p.G286fs
LIHC	TCGA-DD-A3A0-01	CELF2	ENST00000537122.1,ENST00000609870.1	chr10	11259387:11259470:11291115:11291164:11299700:11299835,11207490:11207645:11291115:11291164:11299700:11299835,	11291116	11291164	11291125	11291125	Frame_Shift_Del	C	-	p.P115fs
LIHC	TCGA-DD-A3A0-01	PROSER2	ENST00000277570.5	chr10	11893995:11894214:11908529:11908782:11911488:11914276,	11908530	11908782	11908581	11908581	Frame_Shift_Del	T	-	p.F65fs
LIHC	TCGA-DD-A3A0-01	PROSER2	ENST00000277570.5	chr10	11893995:11894214:11908529:11908782:11911488:11914276,	11908530	11908782	11908663	11908663	Frame_Shift_Del	C	-	p.S91fs
LIHC	TCGA-DD-A3A0-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11971863:11971984:11973639:11973781:11978543:11978711,	11973640	11973781	11973687	11973687	Frame_Shift_Del	T	-	p.K1214fs
LIHC	TCGA-DD-A3A0-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11990367:11990507:11994064:11994248:11997230:11997506,	11994065	11994248	11994135	11994135	Frame_Shift_Del	T	-	p.K988fs
LIHC	TCGA-DD-A3A0-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	12009339:12009453:12021055:12021164:12039670:12039756,	12021056	12021164	12021070	12021070	Frame_Shift_Del	C	-	p.D647fs
LIHC	TCGA-DD-A3A0-01	CDC123	ENST00000455773.3,ENST00000429258.2,ENST00000281141.4,ENST00000378900.2	chr10	12252288:12252321:12257738:12257834:12259359:12259466,	12257739	12257834	12257793	12257793	Frame_Shift_Del	G	-	p.G99fs
LIHC	TCGA-DD-A3A0-01	CCDC3	ENST00000378839.1	chr10	12938626:12940679:13040337:13040512:13091673:13091941,	13040338	13040512	13040389	13040389	Frame_Shift_Del	C	-	p.G41fs
LIHC	TCGA-DD-A3A0-01	OPTN	ENST00000424614.1,ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000263036.5	chr10	13158267:13158340:13160887:13161040:13164384:13164487,	13160888	13161040	13160983	13160983	Frame_Shift_Del	G	-	p.R241fs
LIHC	TCGA-DD-A3A0-01	OPTN	ENST00000378764.2,ENST00000378752.3	chr10	13158267:13158340:13160905:13161040:13164384:13164487,	13160906	13161040	13160983	13160983	Frame_Shift_Del	G	-	p.R241fs
LIHC	TCGA-DD-A3A0-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13165994:13166110:13167417:13167567:13167945:13168039,	13167418	13167567	13167516	13167516	Frame_Shift_Del	A	-	p.E366fs
LIHC	TCGA-DD-A3A0-01	PHYH	ENST00000263038.4,ENST00000479604.1,ENST00000453759.2,ENST00000396913.2,ENST00000396920.3	chr10	13333830:13333912:13336427:13336596:13337495:13337606,	13336428	13336596	13336580	13336580	Frame_Shift_Del	T	-	p.I69fs
LIHC	TCGA-DD-A3A0-01	BEND7	ENST00000396898.2,ENST00000396900.2,ENST00000341083.3,ENST00000378605.3	chr10	13494538:13494658:13522898:13523124:13534610:13534826,	13522899	13523124	13523002	13523002	Frame_Shift_Del	A	-	p.F268fs
LIHC	TCGA-DD-A3A0-01	OLAH	ENST00000378217.3	chr10	15091721:15091764:15098822:15098981:15103722:15103861,	15098823	15098981	15098973	15098973	Frame_Shift_Del	T	-	p.I105fs
LIHC	TCGA-DD-A3A0-01	NMT2	ENST00000540259.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15154794:15154962:15161341:15161512:15170348:15170457,	15161342	15161512	15161389	15161389	Frame_Shift_Del	G	-	p.H375fs
LIHC	TCGA-DD-A3A0-01	ITGA8	ENST00000378076.3	chr10	15573048:15573150:15590453:15590567:15600072:15600201,	15590454	15590567	15590540	15590540	Frame_Shift_Del	T	-	p.I932fs
LIHC	TCGA-DD-A3A0-01	CUBN	ENST00000377833.4	chr10	17032332:17032514:17061831:17061982:17083031:17083219,	17061832	17061982	17061957	17061957	Frame_Shift_Del	C	-	p.G1348fs
LIHC	TCGA-DD-A3A0-01	VIM	ENST00000487938.1,ENST00000544301.1,ENST00000469543.1,ENST00000224237.5,ENST00000421459.2	chr10	17272648:17272709:17275585:17275681:17275768:17275930,	17275586	17275681	17275658	17275658	Frame_Shift_Del	T	-	p.F233fs
LIHC	TCGA-DD-A3A0-01	SLC39A12	ENST00000377374.4,ENST00000377371.3,ENST00000539911.1,ENST00000377369.2	chr10	18254411:18254619:18266830:18267003:18270240:18270412,	18266831	18267003	18266966	18266966	Frame_Shift_Del	A	-	p.E296fs
LIHC	TCGA-DD-A3A0-01	CACNB2	ENST00000282343.8,ENST00000377315.4,ENST00000377329.4,ENST00000324631.7,ENST00000396576.2	chr10	18795399:18795476:18803164:18803298:18807264:18807345,	18803165	18803298	18803201	18803201	Frame_Shift_Del	A	-	p.E181fs
LIHC	TCGA-DD-A3A0-01	CACNB2	ENST00000377331.2,ENST00000352115.6	chr10	18795399:18795476:18803908:18803970:18807264:18807345,	18803909	18803970	18803941	18803941	Frame_Shift_Del	A	-	p.K235fs
LIHC	TCGA-DD-A3A0-01	NSUN6	ENST00000377304.4	chr10	18885136:18885256:18898773:18898855:18903388:18903542,	18898774	18898855	18898814	18898814	Frame_Shift_Del	G	-	p.P206fs
LIHC	TCGA-DD-A3A0-01	PLXDC2	ENST00000377238.2,ENST00000377242.3,ENST00000377252.4	chr10	20357098:20357168:20432223:20432346:20436712:20436831,	20432224	20432346	20432336	20432336	Frame_Shift_Del	T	-	p.Y218fs
LIHC	TCGA-DD-A3A0-01	MLLT10	ENST00000377072.3,ENST00000476557.1,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21846549:21846753:21875222:21875277:21884259:21884307,21827761:21827841:21875222:21875277:21884259:21884307,	21875223	21875277	21875274	21875274	Frame_Shift_Del	G	-	p.G99fs
LIHC	TCGA-DD-A3A0-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24831927	24831927	Frame_Shift_Del	A	-	p.E926fs
LIHC	TCGA-DD-A3A0-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24908805	24908805	Frame_Shift_Del	G	-	p.P673fs
LIHC	TCGA-DD-A3A0-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24908901	24908901	Frame_Shift_Del	T	-	p.K641fs
LIHC	TCGA-DD-A3A0-01	ARHGAP21	ENST00000376410.2	chr10	24896673:24896832:24908401:24910298:24918924:24918979,	24908402	24910298	24909255	24909255	Frame_Shift_Del	T	-	p.K523fs
LIHC	TCGA-DD-A3A0-01	MYO3A	ENST00000265944.5,ENST00000376302.1,ENST00000543632.1	chr10	26224716:26224759:26241022:26241207:26243802:26243937,	26241023	26241207	26241136	26241136	Frame_Shift_Del	G	-	p.G33fs
LIHC	TCGA-DD-A3A0-01	APBB1IP	ENST00000376236.4	chr10	26800675:26800835:26802467:26802589:26822367:26822454,	26802468	26802589	26802473	26802473	Frame_Shift_Del	T	-	p.F234fs
LIHC	TCGA-DD-A3A0-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27303422:27303640:27306430:27306721:27311486:27311616,	27306431	27306721	27306452	27306452	Frame_Shift_Del	T	-	p.K1495fs
LIHC	TCGA-DD-A3A0-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27323767	27323767	Frame_Shift_Del	T	-	p.K1204fs
LIHC	TCGA-DD-A3A0-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27323866	27323866	Frame_Shift_Del	A	-	p.F1171fs
LIHC	TCGA-DD-A3A0-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324104	27324104	Frame_Shift_Del	A	-	p.L1092fs
LIHC	TCGA-DD-A3A0-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324297	27324297	Frame_Shift_Del	T	-	p.R1028fs
LIHC	TCGA-DD-A3A0-01	ARMC4	ENST00000537576.1,ENST00000305242.5,ENST00000545014.1	chr10	28229491:28229734:28233150:28233360:28233744:28233891,	28233151	28233360	28233199	28233199	Frame_Shift_Del	A	-	p.F565fs
LIHC	TCGA-DD-A3A0-01	MPP7	ENST00000375719.3,ENST00000540098.1,ENST00000337532.5,ENST00000375732.1,ENST00000496637.2,ENST00000481244.1	chr10	28438910:28438988:28491081:28491200:28527496:28527629,	28491082	28491200	28491102	28491102	Frame_Shift_Del	T	-	p.S46fs
LIHC	TCGA-DD-A3A0-01	WAC	ENST00000424454.1,ENST00000375664.4,ENST00000354911.4,ENST00000428935.1,ENST00000345541.6,ENST00000439676.1	chr10	28879650:28879761:28884661:28884970:28897114:28897360,	28884662	28884970	28884955	28884955	Frame_Shift_Del	A	-	p.K257fs
LIHC	TCGA-DD-A3A0-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4,ENST00000538146.1	chr10	29775013:29775159:29775338:29775486:29776091:29776228,	29775339	29775486	29775359	29775359	Frame_Shift_Del	C	-	p.G1539fs
LIHC	TCGA-DD-A3A0-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29821523	29821523	Frame_Shift_Del	T	-	p.K591fs
LIHC	TCGA-DD-A3A0-01	ARHGAP12	ENST00000396144.4,ENST00000344936.2,ENST00000375250.5	chr10	32141444:32141525:32150322:32150586:32197099:32197802,32142993:32143134:32150322:32150586:32197099:32197802,	32150323	32150586	32150457	32150457	Frame_Shift_Del	C	-	p.E272fs
LIHC	TCGA-DD-A3A0-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000455749.1,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000374875.1,ENST00000265371.4	chr10	33542955:33543122:33545243:33545399:33552573:33552632,	33545244	33545399	33545293	33545293	Frame_Shift_Del	T	-	p.K255fs
LIHC	TCGA-DD-A3A0-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000265371.4	chr10	33552573:33552801:33559602:33559784:33619635:33619810,	33559603	33559784	33559673	33559673	Frame_Shift_Del	A	-	p.F120fs
LIHC	TCGA-DD-A3A0-01	NRP1	ENST00000374822.4,ENST00000395995.1,ENST00000374821.5,ENST00000432372.2,ENST00000374816.3,ENST00000374867.2,ENST00000374823.5,ENST00000265371.4	chr10	33552573:33552801:33559602:33559784:33619635:33619810,	33559603	33559784	33559746	33559746	Frame_Shift_Del	T	-	p.N96fs
LIHC	TCGA-DD-A3A0-01	PARD3	ENST00000374789.3,ENST00000545693.1,ENST00000545260.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34420390:34420511:34558584:34558827:34606034:34606260,34420390:34420511:34558584:34558827:34573062:34573173,	34558585	34558827	34558628	34558628	Frame_Shift_Del	G	-	p.Q1129fs
LIHC	TCGA-DD-A3A0-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000374794.3,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000545260.1,ENST00000346874.4,ENST00000544292.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34673056:34673182:34688257:34688341:34690753:34690845,	34688258	34688341	34688314	34688314	Frame_Shift_Del	G	-	p.P278fs
LIHC	TCGA-DD-A3A0-01	RET	ENST00000340058.5,ENST00000355710.3	chr10	43604478:43604678:43606654:43606913:43607546:43607672,	43606655	43606913	43606674	43606674	Frame_Shift_Del	A	-	p.E428fs
LIHC	TCGA-DD-A3A0-01	ZNF485	ENST00000374435.3,ENST00000361807.3,ENST00000430885.1	chr10	44104061:44104188:44104702:44104798:44111738:44111843,	44104703	44104798	44104722	44104722	Frame_Shift_Del	A	-	p.P57fs
LIHC	TCGA-DD-A3A0-01	ALOX5	ENST00000374391.2,ENST00000542434.1	chr10	45924065:45924212:45935877:45936081:45936791:45936878,	45935878	45936081	45935928	45935928	Frame_Shift_Del	A	-	p.A344fs
LIHC	TCGA-DD-A3A0-01	MARCH8	ENST00000395769.2,ENST00000319836.3,ENST00000395771.3	chr10	45954567:45954715:45956678:45956859:45959686:45959775,	45956679	45956859	45956825	45956825	Frame_Shift_Del	G	-	p.L375fs
LIHC	TCGA-DD-A3A0-01	SYT15	ENST00000374323.4	chr10	46967425:46967721:46968580:46968723:46970441:46970484,	46968581	46968723	46968694	46968694	Frame_Shift_Del	G	-	p.P134fs
LIHC	TCGA-DD-A3A0-01	FRMPD2	ENST00000305531.3,ENST00000407470.4	chr10	49450203:49450395:49457063:49457221:49459608:49459654,	49457064	49457221	49457158	49457158	Frame_Shift_Del	A	-	p.F72fs
LIHC	TCGA-DD-A3A0-01	ARHGAP22	ENST00000417247.2,ENST00000249601.4,ENST00000417912.2,ENST00000374172.1,ENST00000435790.2,ENST00000374170.1,ENST00000460425.1	chr10	49654600:49654662:49658303:49659183:49661346:49661468,	49658304	49659183	49658875	49658875	Frame_Shift_Del	G	-	p.R433fs
LIHC	TCGA-DD-A3A0-01	ARHGAP22	ENST00000489984.1	chr10	49663096:49663177:49667726:49667934:49687678:49687807,49663096:49663177:49667726:49667934:49687630:49687807,49663096:49663177:49667726:49667934:49674618:49674739,	49667727	49667934	49667773	49667773	Frame_Shift_Del	C	-	p.D205fs
LIHC	TCGA-DD-A3A0-01	VSTM4	ENST00000332853.4	chr10	50256522:50256629:50272747:50272781:50285263:50285336,	50272748	50272781	50272769	50272769	Frame_Shift_Del	A	-	p.L216fs
LIHC	TCGA-DD-A3A0-01	PARG	ENST00000402038.3	chr10	51073366:51073427:51077521:51077601:51087718:51087876,	51077522	51077601	51077558	51077558	Frame_Shift_Del	T	-	p.T193fs
LIHC	TCGA-DD-A3A0-01	A1CF	ENST00000373997.3,ENST00000282641.2,ENST00000395495.1	chr10	52610424:52610567:52619601:52619745:52645340:52645387,52603747:52603882:52619601:52619745:52623792:52623840,	52619602	52619745	52619609	52619609	Frame_Shift_Del	A	-	p.L31fs
LIHC	TCGA-DD-A3A0-01	PRKG1	ENST00000373980.4,ENST00000373975.2,ENST00000401604.2,ENST00000373985.1	chr10	54048485:54048608:54048690:54048753:54049983:54050050,	54048691	54048753	54048722	54048722	Frame_Shift_Del	A	-	p.K622fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828548	61828548	Frame_Shift_Del	T	-	p.S4031fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828580	61828580	Frame_Shift_Del	T	-	p.K4020fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829147	61829147	Frame_Shift_Del	T	-	p.K3831fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830601	61830601	Frame_Shift_Del	T	-	p.K3346fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830646	61830646	Frame_Shift_Del	T	-	p.K3331fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831204	61831204	Frame_Shift_Del	T	-	p.Q3145fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831206	61831206	Frame_Shift_Del	G	-	p.Q3145fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832105	61832105	Frame_Shift_Del	C	-	p.G2845fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832451	61832451	Frame_Shift_Del	T	-	p.S2730fs
LIHC	TCGA-DD-A3A0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61834765	61834765	Frame_Shift_Del	A	-	p.V1958fs
LIHC	TCGA-DD-A3A0-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62647969:62648943:62652567:62652753:62670644:62670748,	62652568	62652753	62652692	62652692	Frame_Shift_Del	T	-	p.S120fs
LIHC	TCGA-DD-A3A0-01	RTKN2	ENST00000395265.1,ENST00000395260.3,ENST00000373789.3	chr10	64005757:64005816:64022383:64022580:64028309:64028466,	64022384	64022580	64022399	64022399	Frame_Shift_Del	T	-	p.N81fs
LIHC	TCGA-DD-A3A0-01	ZNF365	ENST00000395251.1,ENST00000461412.1	chr10	64414602:64414690:64415126:64415391:64416155:64416246,	64415127	64415391	64415278	64415278	Frame_Shift_Del	C	-	p.S93fs
LIHC	TCGA-DD-A3A0-01	EGR2	ENST00000439032.1	chr10	64574192:64574228:64575620:64575829:64578300:64578407,	64575621	64575829	64575762	64575762	Frame_Shift_Del	T	-	p.I10fs
LIHC	TCGA-DD-A3A0-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000327520.7,ENST00000542921.1,ENST00000399251.1,ENST00000497922.1	chr10	64949046:64949206:64950653:64950868:64952697:64952851,	64950654	64950868	64950773	64950773	Frame_Shift_Del	G	-	p.Q2058fs
LIHC	TCGA-DD-A3A0-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000542921.1	chr10	64958272:64958487:64960235:64960437:64966354:64967485,	64960236	64960437	64960289	64960289	Frame_Shift_Del	T	-	p.K1741fs
LIHC	TCGA-DD-A3A0-01	DNAJC12	ENST00000483798.2,ENST00000225171.2	chr10	69556839:69556968:69565340:69565545:69571281:69571421,	69565341	69565545	69565361	69565361	Frame_Shift_Del	G	-	p.P161fs
LIHC	TCGA-DD-A3A0-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000473533.2,ENST00000395187.2,ENST00000427635.2	chr10	69692353:69692537:69695909:69695992:69699344:69699408,	69695910	69695992	69695918	69695918	Frame_Shift_Del	T	-	p.K890fs
LIHC	TCGA-DD-A3A0-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000473533.2,ENST00000395187.2,ENST00000412272.2	chr10	69752362:69752439:69773782:69773943:69785302:69785433,	69773783	69773943	69773838	69773838	Frame_Shift_Del	G	-	p.P338fs
LIHC	TCGA-DD-A3A0-01	HERC4	ENST00000395198.3,ENST00000373700.4,ENST00000277817.6,ENST00000395187.2,ENST00000427635.2,ENST00000463478.1,ENST00000412272.2	chr10	69792575:69792626:69793721:69793943:69797849:69797926,	69793722	69793943	69793811	69793811	Frame_Shift_Del	C	-	p.G199fs
LIHC	TCGA-DD-A3A0-01	RUFY2	ENST00000484083.1	chr10	70100909:70101045:70105587:70105668:70105763:70105841,	70105588	70105668	70105591	70105591	Frame_Shift_Del	T	-	p.K620fs
LIHC	TCGA-DD-A3A0-01	RUFY2	ENST00000466493.1	chr10	70100909:70101045:70105458:70105668:70105763:70105841,	70105459	70105668	70105591	70105591	Frame_Shift_Del	T	-	p.K620fs
LIHC	TCGA-DD-A3A0-01	DNA2	ENST00000399179.2,ENST00000399180.2,ENST00000551118.2,ENST00000358410.3	chr10	70225423:70225569:70227879:70228063:70229737:70229920,	70227880	70228063	70228025	70228025	Frame_Shift_Del	A	-	p.L185fs
LIHC	TCGA-DD-A3A0-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644259	70644259	Frame_Shift_Del	C	-	p.A236fs
LIHC	TCGA-DD-A3A0-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645049	70645049	Frame_Shift_Del	T	-	p.G499fs
LIHC	TCGA-DD-A3A0-01	SRGN	ENST00000242465.3	chr10	70847873:70847992:70856839:70856987:70863626:70863688,	70856840	70856987	70856961	70856961	Frame_Shift_Del	C	-	p.I67fs
LIHC	TCGA-DD-A3A0-01	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000467852.1,ENST00000489656.1,ENST00000373382.1,ENST00000263559.6	chr10	70922161:70922268:70925797:70925866:70928244:70928288,	70925798	70925866	70925840	70925840	Frame_Shift_Del	A	-	p.E234fs
LIHC	TCGA-DD-A3A0-01	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000373382.1,ENST00000263559.6	chr10	70925797:70925866:70928244:70928387:70930911:70931016,	70928245	70928387	70928268	70928268	Frame_Shift_Del	T	-	p.F251fs
LIHC	TCGA-DD-A3A0-01	VPS26A	ENST00000541711.1,ENST00000490696.1,ENST00000546041.1,ENST00000373382.1,ENST00000263559.6	chr10	70925797:70925866:70928244:70928387:70930911:70931016,	70928245	70928387	70928334	70928334	Frame_Shift_Del	T	-	p.F273fs
LIHC	TCGA-DD-A3A0-01	HKDC1	ENST00000395086.2	chr10	70980058:70980254:70986962:70987125:70992519:70992668,	70986963	70987125	70987067	70987067	Frame_Shift_Del	C	-	p.N56fs
LIHC	TCGA-DD-A3A0-01	HKDC1	ENST00000354624.5	chr10	71020894:71021050:71025340:71025574:71026365:71027315,	71025341	71025574	71025499	71025499	Frame_Shift_Del	G	-	p.R845fs
LIHC	TCGA-DD-A3A0-01	TACR2	ENST00000373306.4	chr10	71168677:71168831:71174700:71174895:71175687:71176623,	71174701	71174895	71174858	71174858	Frame_Shift_Del	A	-	p.S144fs
LIHC	TCGA-DD-A3A0-01	TSPAN15	ENST00000459981.1,ENST00000475069.1,ENST00000373290.2,ENST00000486093.1,ENST00000452130.1,ENST00000490083.1	chr10	71255349:71255445:71258035:71258152:71264193:71264241,	71258036	71258152	71258100	71258100	Frame_Shift_Del	C	-	p.A173fs
LIHC	TCGA-DD-A3A0-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000520133.1,ENST00000398972.3	chr10	71682463:71682550:71683557:71683611:71684718:71684763,	71683558	71683611	71683594	71683594	Frame_Shift_Del	G	-	p.G412fs
LIHC	TCGA-DD-A3A0-01	COL13A1	ENST00000517713.1,ENST00000479733.1,ENST00000522165.1,ENST00000357811.3,ENST00000456019.1,ENST00000398973.3,ENST00000520133.1	chr10	71697390:71697471:71703880:71703934:71705426:71705480,	71703881	71703934	71703922	71703922	Frame_Shift_Del	A	-	p.P641fs
LIHC	TCGA-DD-A3A0-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000456019.1,ENST00000398975.2,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000398972.3	chr10	71707062:71707098:71712637:71712724:71716759:71716798,	71712638	71712724	71712711	71712711	Frame_Shift_Del	C	-	p.A700fs
LIHC	TCGA-DD-A3A0-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851665	71851665	Frame_Shift_Del	G	-	p.K144fs
LIHC	TCGA-DD-A3A0-01	PPA1	ENST00000373232.3	chr10	71964628:71964671:71966019:71966089:71968960:71969046,	71966020	71966089	71966062	71966062	Frame_Shift_Del	G	-	p.P251fs
LIHC	TCGA-DD-A3A0-01	ADAMTS14	ENST00000373207.1,ENST00000373208.1	chr10	72462067:72462224:72468343:72468534:72489049:72489133,	72468344	72468534	72468354	72468354	Frame_Shift_Del	G	-	p.L230fs
LIHC	TCGA-DD-A3A0-01	ADAMTS14	ENST00000373207.1,ENST00000373208.1	chr10	72462067:72462224:72468343:72468534:72489049:72489133,	72468344	72468534	72468505	72468505	Frame_Shift_Del	C	-	p.Q281fs
LIHC	TCGA-DD-A3A0-01	ADAMTS14	ENST00000373207.1,ENST00000373208.1	chr10	72504981:72505062:72509577:72509741:72511233:72511402,	72509578	72509741	72509613	72509613	Frame_Shift_Del	A	-	p.N770fs
LIHC	TCGA-DD-A3A0-01	CDH23	ENST00000398809.4,ENST00000299366.7,ENST00000461841.3,ENST00000398842.3	chr10	73270876:73270969:73326498:73326693:73330546:73330675,	73326499	73326693	73326586	73326586	Frame_Shift_Del	C	-	p.P179fs
LIHC	TCGA-DD-A3A0-01	CDH23	ENST00000224721.6,ENST00000466757.3,ENST00000299366.7,ENST00000442677.2	chr10	73439143:73439249:73442201:73442329:73447403:73447476,	73442202	73442329	73442287	73442287	Frame_Shift_Del	C	-	p.N653fs
LIHC	TCGA-DD-A3A0-01	CDH23	ENST00000224721.6,ENST00000398792.3	chr10	73490225:73490361:73491743:73492132:73493996:73494098,	73491744	73492132	73491880	73491880	Frame_Shift_Del	G	-	p.S1289fs
LIHC	TCGA-DD-A3A0-01	MICU1	ENST00000361114.5,ENST00000603011.1,ENST00000604238.1,ENST00000401998.3,ENST00000398761.4	chr10	74310936:74311099:74322652:74322821:74326390:74326517,	74322653	74322821	74322781	74322781	Frame_Shift_Del	T	-	p.S68fs
LIHC	TCGA-DD-A3A0-01	MICU1	ENST00000361114.5,ENST00000604025.1,ENST00000604238.1,ENST00000401998.3,ENST00000398761.4	chr10	74322652:74322821:74326390:74326552:74385767:74385832,	74326391	74326552	74326443	74326443	Frame_Shift_Del	C	-	p.A37fs
LIHC	TCGA-DD-A3A0-01	MICU1	ENST00000603011.1	chr10	74322652:74322821:74326390:74326517:74385767:74385832,	74326391	74326517	74326443	74326443	Frame_Shift_Del	C	-	p.A37fs
LIHC	TCGA-DD-A3A0-01	SEC24C	ENST00000477008.1	chr10	75506624:75506762:75510865:75511001:75519379:75519552,75506624:75506762:75510865:75511001:75511474:75511860,	75510866	75511001	75510891	75510891	Frame_Shift_Del	G	-	p.S66fs
LIHC	TCGA-DD-A3A0-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525560	75525560	Frame_Shift_Del	C	-	p.P458fs
LIHC	TCGA-DD-A3A0-01	ZSWIM8	ENST00000603114.1,ENST00000398706.2,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75548853:75548948:75549124:75549297:75549474:75549582,	75549125	75549297	75549250	75549250	Frame_Shift_Del	A	-	p.K195fs
LIHC	TCGA-DD-A3A0-01	ZSWIM8	ENST00000603114.1,ENST00000398706.2,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75550732:75550934:75551081:75551257:75551616:75551954,	75551082	75551257	75551204	75551204	Frame_Shift_Del	G	-	p.E422fs
LIHC	TCGA-DD-A3A0-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R184fs
LIHC	TCGA-DD-A3A0-01	VCL	ENST00000211998.4,ENST00000436396.1	chr10	75868776:75868914:75871666:75871870:75873941:75874145,	75871667	75871870	75871744	75871744	Frame_Shift_Del	C	-	p.V941fs
LIHC	TCGA-DD-A3A0-01	ADK	ENST00000541550.1,ENST00000286621.2,ENST00000372734.3	chr10	76158228:76158337:76285013:76285184:76349039:76349075,	76285014	76285184	76285017	76285017	Frame_Shift_Del	T	-	p.F171fs
LIHC	TCGA-DD-A3A0-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76602357:76603236:76719727:76719836:76729417:76729533,	76719728	76719836	76719776	76719776	Frame_Shift_Del	G	-	p.E224fs
LIHC	TCGA-DD-A3A0-01	KAT6B	ENST00000287239.4	chr10	76732264:76732397:76735156:76736088:76737073:76737195,	76735157	76736088	76735680	76735680	Frame_Shift_Del	C	-	p.P529fs
LIHC	TCGA-DD-A3A0-01	KAT6B	ENST00000287239.4	chr10	76732264:76732397:76735156:76736088:76737073:76737195,	76735157	76736088	76735863	76735863	Frame_Shift_Del	A	-	p.K590fs
LIHC	TCGA-DD-A3A0-01	VDAC2	ENST00000332211.6,ENST00000313132.4,ENST00000298468.5,ENST00000543351.1,ENST00000535553.1	chr10	76980500:76980728:76982009:76982160:76989401:76989459,	76982010	76982160	76982112	76982112	Frame_Shift_Del	T	-	p.R190fs
LIHC	TCGA-DD-A3A0-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79581660	79581660	Frame_Shift_Del	G	-	p.P861fs
LIHC	TCGA-DD-A3A0-01	DLG5	ENST00000475613.2,ENST00000372388.2,ENST00000372391.2,ENST00000468332.2	chr10	79588639:79588743:79589112:79589288:79589974:79590102,	79589113	79589288	79589197	79589197	Frame_Shift_Del	C	-	p.A701fs
LIHC	TCGA-DD-A3A0-01	DLG5	ENST00000475613.2,ENST00000372388.2,ENST00000372391.2,ENST00000468332.2	chr10	79588639:79588743:79589112:79589288:79589974:79590102,	79589113	79589288	79589203	79589203	Frame_Shift_Del	C	-	p.E699fs
LIHC	TCGA-DD-A3A0-01	ANXA11	ENST00000372231.3,ENST00000535999.1,ENST00000438331.1,ENST00000422982.3,ENST00000360615.4,ENST00000537102.1,ENST00000265447.4	chr10	81926981:81927069:81928724:81929114:81930555:81930671,	81928725	81929114	81928848	81928848	Frame_Shift_Del	C	-	p.G146fs
LIHC	TCGA-DD-A3A0-01	GHITM	ENST00000372134.3	chr10	85908485:85908594:85909810:85909999:85910464:85910636,	85909811	85909999	85909849	85909849	Frame_Shift_Del	G	-	p.G212fs
LIHC	TCGA-DD-A3A0-01	GHITM	ENST00000372134.3	chr10	85908485:85908594:85909810:85909999:85910464:85910636,	85909811	85909999	85909957	85909957	Frame_Shift_Del	C	-	p.P247fs
LIHC	TCGA-DD-A3A0-01	BMPR1A	ENST00000372037.3	chr10	88635623:88635842:88649818:88649981:88651883:88651986,	88649819	88649981	88649922	88649922	Frame_Shift_Del	T	-	p.P57fs
LIHC	TCGA-DD-A3A0-01	SNCG	ENST00000372017.3,ENST00000465679.1,ENST00000483064.1	chr10	88719389:88719431:88719757:88719885:88722360:88722394,	88719758	88719885	88719871	88719871	Frame_Shift_Del	G	-	p.G93fs
LIHC	TCGA-DD-A3A0-01	SNCG	ENST00000348795.4	chr10	88719389:88719431:88719705:88719885:88722360:88722394,	88719706	88719885	88719871	88719871	Frame_Shift_Del	G	-	p.G93fs
LIHC	TCGA-DD-A3A0-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88820709:88820809:88822412:88822592:88827819:88827914,	88822413	88822592	88822543	88822543	Frame_Shift_Del	C	-	p.G264fs
LIHC	TCGA-DD-A3A0-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88827819:88827914:88834307:88834371:88835724:88835780,	88834308	88834371	88834312	88834312	Frame_Shift_Del	A	-	p.F214fs
LIHC	TCGA-DD-A3A0-01	RNLS	ENST00000331772.4	chr10	90034717:90034789:90074222:90074398:90122308:90122482,90044715:90045263:90074222:90074398:90122308:90122482,	90074223	90074398	90074238	90074238	Frame_Shift_Del	T	-	p.K287fs
LIHC	TCGA-DD-A3A0-01	RNLS	ENST00000466945.1,ENST00000331772.4	chr10	90341323:90341466:90341958:90342064:90342829:90342947,	90341959	90342064	90342061	90342061	Frame_Shift_Del	C	-	p.G41fs
LIHC	TCGA-DD-A3A0-01	LIPF	ENST00000238983.4,ENST00000394375.3,ENST00000496797.1,ENST00000355843.2,ENST00000608620.1	chr10	90435342:90435414:90435965:90436037:90438201:90438271,	90435966	90436037	90436000	90436000	Frame_Shift_Del	G	-	p.W318fs
LIHC	TCGA-DD-A3A0-01	ACTA2	ENST00000458208.1,ENST00000415557.1,ENST00000480297.1,ENST00000458159.1,ENST00000224784.6	chr10	90703553:90703664:90707014:90707143:90708558:90708710,	90707015	90707143	90707140	90707140	Frame_Shift_Del	C	-	p.V45fs
LIHC	TCGA-DD-A3A0-01	PANK1	ENST00000307534.4	chr10	91359008:91359262:91371452:91371805:91404356:91405215,	91371453	91371805	91371570	91371570	Frame_Shift_Del	G	-	p.P313fs
LIHC	TCGA-DD-A3A0-01	HECTD2	ENST00000371681.4,ENST00000298068.5	chr10	93170101:93170333:93185037:93185167:93220183:93220322,	93185038	93185167	93185040	93185040	Frame_Shift_Del	T	-	p.G47fs
LIHC	TCGA-DD-A3A0-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93250956:93251064:93252108:93252241,93247438:93247535:93250956:93251064:93252108:93252241,	93250957	93251064	93251011	93251011	Frame_Shift_Del	T	-	p.F420fs
LIHC	TCGA-DD-A3A0-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371501.4	chr10	95082874:95082930:95083026:95083115:95085582:95085722,	95083027	95083115	95083081	95083081	Frame_Shift_Del	T	-	p.K1769fs
LIHC	TCGA-DD-A3A0-01	SLC35G1	ENST00000427197.1	chr10	95653778:95653968:95658327:95658508:95660508:95662490,	95658328	95658508	95658417	95658417	Frame_Shift_Del	A	-	p.K90fs
LIHC	TCGA-DD-A3A0-01	TBC1D12	ENST00000225235.4	chr10	96282100:96282210:96290958:96291217:96292784:96293054,	96290959	96291217	96291020	96291020	Frame_Shift_Del	T	-	p.F688fs
LIHC	TCGA-DD-A3A0-01	CYP2C18	ENST00000285979.6	chr10	96454673:96454834:96466540:96466717:96480152:96480294,	96466541	96466717	96466656	96466656	Frame_Shift_Del	A	-	p.E253fs
LIHC	TCGA-DD-A3A0-01	CYP2C18	ENST00000285979.6	chr10	96454673:96454834:96466540:96466717:96480152:96480294,	96466541	96466717	96466706	96466706	Frame_Shift_Del	A	-	p.K270fs
LIHC	TCGA-DD-A3A0-01	SORBS1	ENST00000607232.1	chr10	97114638:97114724:97115383:97116862:97117387:97117534,	97115384	97116862	97116277	97116277	Frame_Shift_Del	C	-	p.G672fs
LIHC	TCGA-DD-A3A0-01	TLL2	ENST00000357947.3	chr10	98188387:98188505:98192563:98192719:98205847:98205925,	98192564	98192719	98192589	98192589	Frame_Shift_Del	G	-	p.P165fs
LIHC	TCGA-DD-A3A0-01	RRP12	ENST00000536831.1,ENST00000315563.6,ENST00000370992.4,ENST00000414986.1	chr10	99141142:99141240:99141471:99141583:99144922:99145014,	99141472	99141583	99141541	99141541	Frame_Shift_Del	A	-	p.F417fs
LIHC	TCGA-DD-A3A0-01	MORN4	ENST00000307450.6,ENST00000335628.3	chr10	99374311:99376168:99376434:99376544:99376964:99377079,	99376435	99376544	99376455	99376455	Frame_Shift_Del	T	-	p.N149fs
LIHC	TCGA-DD-A3A0-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99967922	99967922	Frame_Shift_Del	G	-	p.M17fs
LIHC	TCGA-DD-A3A0-01	PYROXD2	ENST00000370575.4,ENST00000483923.1	chr10	100152698:100152840:100154952:100155050:100155147:100155209,	100154953	100155050	100154986	100154986	Frame_Shift_Del	C	-	p.G251fs
LIHC	TCGA-DD-A3A0-01	ERLIN1	ENST00000407654.3,ENST00000421367.2,ENST00000370408.2	chr10	101914616:101914696:101915901:101915991:101923760:101923852,	101915902	101915991	101915933	101915933	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-DD-A3A0-01	SEMA4G	ENST00000519649.1,ENST00000517724.1,ENST00000521006.1,ENST00000519756.1,ENST00000210633.3,ENST00000370250.4	chr10	102737388:102737487:102738051:102738145:102738283:102738397,	102738052	102738145	102738119	102738119	Frame_Shift_Del	C	-	p.A168fs
LIHC	TCGA-DD-A3A0-01	SEMA4G	ENST00000519649.1,ENST00000517724.1,ENST00000521006.1,ENST00000210633.3,ENST00000370250.4	chr10	102739878:102740101:102740334:102740450:102740578:102740677,	102740335	102740450	102740407	102740407	Frame_Shift_Del	G	-	p.R475fs
LIHC	TCGA-DD-A3A0-01	SEMA4G	ENST00000519649.1,ENST00000517724.1,ENST00000521006.1,ENST00000210633.3,ENST00000370250.4	chr10	102739878:102740101:102740334:102740450:102740578:102740677,	102740335	102740450	102740425	102740425	Frame_Shift_Del	A	-	p.E481fs
LIHC	TCGA-DD-A3A0-01	CYP17A1	ENST00000369887.3	chr10	104592749:104592965:104593792:104593879:104594541:104594771,	104593793	104593879	104593853	104593853	Frame_Shift_Del	T	-	p.K231fs
LIHC	TCGA-DD-A3A0-01	SORCS3	ENST00000369701.3	chr10	107015459:107015559:107016576:107016682:107022088:107022249,	107016577	107016682	107016660	107016660	Frame_Shift_Del	T	-	p.F1141fs
LIHC	TCGA-DD-A3A0-01	XPNPEP1	ENST00000430337.1	chr10	111652769:111652833:111667448:111667573:111674768:111674833,111652769:111652833:111667448:111667573:111683159:111683189,111651479:111651584:111667448:111667573:111683159:111683189,111651479:111651584:111667448:111667573:111674768:111674833,	111667449	111667573	111667468	111667468	Frame_Shift_Del	G	-	p.P76fs
LIHC	TCGA-DD-A3A0-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115371992:115372190:115373941:115374055:115374597:115374705,	115373942	115374055	115374004	115374004	Frame_Shift_Del	G	-	p.R1088fs
LIHC	TCGA-DD-A3A0-01	NHLRC2	ENST00000369301.3	chr10	115644009:115644139:115657868:115657968:115661424:115661656,	115657869	115657968	115657913	115657913	Frame_Shift_Del	G	-	p.G362fs
LIHC	TCGA-DD-A3A0-01	VWA2	ENST00000603594.1,ENST00000298715.4,ENST00000392982.3	chr10	116044621:116044729:116045697:116046270:116048696:116049248,	116045698	116046270	116045777	116045777	Frame_Shift_Del	C	-	p.F359fs
LIHC	TCGA-DD-A3A0-01	AFAP1L2	ENST00000304129.4,ENST00000545353.1,ENST00000369271.3,ENST00000491814.1	chr10	116059952:116060121:116060203:116060449:116061112:116061224,	116060204	116060449	116060211	116060211	Frame_Shift_Del	C	-	p.G594fs
LIHC	TCGA-DD-A3A0-01	ATRNL1	ENST00000423111.2,ENST00000424738.1,ENST00000355044.3	chr10	117228681:117228839:117278772:117278834:117308967:117309037,	117278773	117278834	117278815	117278815	Frame_Shift_Del	T	-	p.F1234fs
LIHC	TCGA-DD-A3A0-01	PNLIPRP1	ENST00000525820.1,ENST00000528052.1,ENST00000534537.1,ENST00000358834.4	chr10	118357580:118357678:118359558:118359677:118360583:118360713,	118359559	118359677	118359675	118359675	Frame_Shift_Del	T	-	p.S311fs
LIHC	TCGA-DD-A3A0-01	PNLIPRP1	ENST00000531825.1,ENST00000526223.1	chr10	118357580:118357678:118359558:118359825:118360583:118360713,	118359559	118359825	118359675	118359675	Frame_Shift_Del	T	-	p.S311fs
LIHC	TCGA-DD-A3A0-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014792	119014792	Frame_Shift_Del	C	-	p.G235fs
LIHC	TCGA-DD-A3A0-01	FAM45A	ENST00000487888.1,ENST00000361432.2	chr10	120871360:120871440:120877030:120877179:120879852:120879964,	120877031	120877179	120877059	120877059	Frame_Shift_Del	A	-	p.K121fs
LIHC	TCGA-DD-A3A0-01	FAM45A	ENST00000487888.1,ENST00000361432.2	chr10	120871360:120871440:120877030:120877179:120879852:120879964,	120877031	120877179	120877094	120877094	Frame_Shift_Del	G	-	p.K132fs
LIHC	TCGA-DD-A3A0-01	FAM45A	ENST00000487888.1,ENST00000361432.2	chr10	120871360:120871440:120877030:120877179:120879852:120879964,	120877031	120877179	120877114	120877114	Frame_Shift_Del	A	-	p.E139fs
LIHC	TCGA-DD-A3A0-01	TIAL1	ENST00000369093.2	chr10	121341680:121341735:121341970:121342120:121347663:121347722,	121341971	121342120	121341978	121341978	Frame_Shift_Del	A	-	p.L91fs
LIHC	TCGA-DD-A3A0-01	TIAL1	ENST00000412524.1,ENST00000369092.4,ENST00000489822.1,ENST00000436547.2,ENST00000470781.1,ENST00000497671.1,ENST00000369086.1	chr10	121341680:121341735:121341970:121342069:121347663:121347722,	121341971	121342069	121341978	121341978	Frame_Shift_Del	A	-	p.L91fs
LIHC	TCGA-DD-A3A0-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123629520:123629553:123658355:123658484:123661905:123662053,	123658356	123658484	123658421	123658421	Frame_Shift_Del	A	-	p.S293fs
LIHC	TCGA-DD-A3A0-01	TACC2	ENST00000369001.1,ENST00000369000.1,ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000369004.3,ENST00000515273.1,ENST00000260733.3,ENST00000515603.1,ENST00000513429.1,ENST00000358010.1,ENST00000368999.1,ENST00000465600.1,ENST00000360561.3,ENST00000368997.3	chr10	124008564:124008671:124009058:124009179:124013505:124013852,	124009059	124009179	124009160	124009160	Frame_Shift_Del	A	-	p.E2921fs
LIHC	TCGA-DD-A3A0-01	DMBT1	ENST00000368956.2,ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000330163.4,ENST00000338354.3,ENST00000359586.6	chr10	124389803:124390006:124390476:124390797:124391370:124391391,	124390477	124390797	124390567	124390567	Frame_Shift_Del	T	-	p.V1910fs
LIHC	TCGA-DD-A3A0-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742491	124742491	Frame_Shift_Del	T	-	p.N153fs
LIHC	TCGA-DD-A3A0-01	ACADSB	ENST00000411816.1,ENST00000496730.2,ENST00000358776.4	chr10	124793871:124794031:124797262:124797363:124799981:124800173,	124797263	124797363	124797265	124797265	Frame_Shift_Del	A	-	p.K70fs
LIHC	TCGA-DD-A3A0-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805378	125805378	Frame_Shift_Del	G	-	p.P117fs
LIHC	TCGA-DD-A3A0-01	OAT	ENST00000368845.5	chr10	126097461:126097534:126100541:126100769:126107441:126107505,	126100542	126100769	126100557	126100557	Frame_Shift_Del	G	-	p.L62fs
LIHC	TCGA-DD-A3A0-01	UROS	ENST00000420761.1,ENST00000368797.4,ENST00000462490.1,ENST00000368786.1	chr10	127484671:127484757:127486633:127486714:127495981:127496034,	127486634	127486714	127486667	127486667	Frame_Shift_Del	T	-	p.R148fs
LIHC	TCGA-DD-A3A0-01	DOCK1	ENST00000280333.6	chr10	128788718:128788867:128795011:128795147:128796355:128796513,	128795012	128795147	128795115	128795115	Frame_Shift_Del	A	-	p.K193fs
LIHC	TCGA-DD-A3A0-01	DOCK1	ENST00000280333.6	chr10	128797617:128797699:128798435:128798571:128806995:128807068,	128798436	128798571	128798543	128798543	Frame_Shift_Del	G	-	p.S319fs
LIHC	TCGA-DD-A3A0-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913338	129913338	Frame_Shift_Del	A	-	p.L445fs
LIHC	TCGA-DD-A3A0-01	EBF3	ENST00000368648.3	chr10	131638508:131638706:131639107:131639296:131640379:131640435,131638508:131638598:131639107:131639296:131640379:131640435,	131639108	131639296	131639247	131639247	Frame_Shift_Del	G	-	p.P465fs
LIHC	TCGA-DD-A3A0-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218149	134218149	Frame_Shift_Del	C	-	p.P50fs
LIHC	TCGA-DD-A3A0-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218811	134218811	Frame_Shift_Del	C	-	p.I269fs
LIHC	TCGA-DD-A3A0-01	ADAM8	ENST00000559180.1,ENST00000415217.3,ENST00000463298.1	chr10	135087662:135087739:135088987:135089091:135090275:135090354,	135088988	135089091	135089040	135089040	Frame_Shift_Del	A	-	p.L33fs
LIHC	TCGA-DD-A3A0-01	TUBGCP2	ENST00000252936.3,ENST00000417178.2,ENST00000482278.1,ENST00000368563.2,ENST00000543663.1,ENST00000368562.1	chr10	135097385:135097506:135098588:135098717:135098959:135099132,	135098589	135098717	135098623	135098623	Frame_Shift_Del	T	-	p.T664fs
LIHC	TCGA-DD-A3A0-01	TUBGCP2	ENST00000252936.3,ENST00000417178.2,ENST00000487796.2,ENST00000482278.1,ENST00000368563.2,ENST00000543663.1	chr10	135111490:135111615:135112930:135113107:135113488:135113617,	135112931	135113107	135113078	135113078	Frame_Shift_Del	T	-	p.K103fs
LIHC	TCGA-DD-A3A0-01	SIRT3	ENST00000529055.1	chr11	224221:224239:230451:230641:232982:233215,	230452	230641	230463	230463	Frame_Shift_Del	C	-	p.E266fs
LIHC	TCGA-DD-A3A0-01	SIRT3	ENST00000524564.1,ENST00000526854.1,ENST00000525319.1,ENST00000529382.1,ENST00000382743.4,ENST00000532837.1	chr11	224221:224239:230451:230552:232982:233215,	230452	230552	230463	230463	Frame_Shift_Del	C	-	p.E266fs
LIHC	TCGA-DD-A3A0-01	SIRT3	ENST00000529055.1,ENST00000530067.1,ENST00000532837.1	chr11	233208:233215:233342:233534:236047:236326,233208:233215:233342:233534:236193:236337,	233343	233534	233503	233503	Frame_Shift_Del	A	-	p.S105fs
LIHC	TCGA-DD-A3A0-01	PSMD13	ENST00000527047.1,ENST00000352303.5,ENST00000431206.2,ENST00000534590.1,ENST00000526783.1,ENST00000382671.4,ENST00000532097.1,ENST00000528906.1,ENST00000525665.1	chr11	244428:244469:244674:244761:247276:247300,	244675	244761	244678	244678	Frame_Shift_Del	A	-	p.K105fs
LIHC	TCGA-DD-A3A0-01	PSMD13	ENST00000529372.1	chr11	244428:244469:244674:244705:247276:247448,	244675	244705	244678	244678	Frame_Shift_Del	A	-	p.K105fs
LIHC	TCGA-DD-A3A0-01	PSMD13	ENST00000533717.1,ENST00000431206.2,ENST00000382671.4,ENST00000532097.1,ENST00000525665.1	chr11	250802:250865:251545:251626:251819:251894,	251546	251626	251592	251592	Frame_Shift_Del	A	-	p.E295fs
LIHC	TCGA-DD-A3A0-01	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	281434	281434	Frame_Shift_Del	T	-	p.V567fs
LIHC	TCGA-DD-A3A0-01	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	281443	281443	Frame_Shift_Del	G	-	p.R570fs
LIHC	TCGA-DD-A3A0-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380875	380875	Frame_Shift_Del	T	-	p.F974fs
LIHC	TCGA-DD-A3A0-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380875	380875	Frame_Shift_Del	T	-	p.F974fs
LIHC	TCGA-DD-A3A0-01	ANO9	ENST00000534161.1,ENST00000528927.1,ENST00000332826.6	chr11	418887:418989:419581:419729:420462:420615,	419582	419729	419674	419674	Frame_Shift_Del	C	-	p.G614fs
LIHC	TCGA-DD-A3A0-01	ANO9	ENST00000526142.1	chr11	418887:418989:419581:420615:420717:420860,	419582	420615	419674	419674	Frame_Shift_Del	C	-	p.G614fs
LIHC	TCGA-DD-A3A0-01	ANO9	ENST00000532094.1,ENST00000534161.1,ENST00000528927.1,ENST00000526142.1,ENST00000332826.6	chr11	421140:421198:428087:428199:428357:428394,	428088	428199	428091	428091	Frame_Shift_Del	C	-	p.G444fs
LIHC	TCGA-DD-A3A0-01	HRAS	ENST00000397596.2,ENST00000451590.1,ENST00000493230.1,ENST00000417302.1,ENST00000397594.1,ENST00000311189.7	chr11	533452:533612:533765:533944:534211:534375,	533766	533944	533851	533851	Frame_Shift_Del	C	-	p.D69fs
LIHC	TCGA-DD-A3A0-01	HRAS	ENST00000451590.1,ENST00000493230.1,ENST00000417302.1,ENST00000311189.7	chr11	533794:533944:534211:534375:535256:535339,533794:533944:534211:534375:535415:535534,	534212	534375	534288	534288	Frame_Shift_Del	C	-	p.G13fs
LIHC	TCGA-DD-A3A0-01	PHRF1	ENST00000264555.5,ENST00000533464.1,ENST00000534320.1,ENST00000532550.1	chr11	605118:605300:605604:605724:606441:606596,	605605	605724	605626	605626	Frame_Shift_Del	C	-	p.N452fs
LIHC	TCGA-DD-A3A0-01	PHRF1	ENST00000413872.2,ENST00000416188.2	chr11	605118:605300:605607:605724:606441:606596,	605608	605724	605626	605626	Frame_Shift_Del	C	-	p.N452fs
LIHC	TCGA-DD-A3A0-01	IRF7	ENST00000348655.6,ENST00000397570.1	chr11	613950:614037:614173:614399:614475:614531,613821:613865:614173:614399:614475:614531,	614174	614399	614186	614186	Frame_Shift_Del	C	-	p.A236fs
LIHC	TCGA-DD-A3A0-01	IRF7	ENST00000348655.6,ENST00000397570.1	chr11	613950:614037:614173:614399:614475:614531,613821:613865:614173:614399:614475:614531,	614174	614399	614246	614246	Frame_Shift_Del	C	-	p.A216fs
LIHC	TCGA-DD-A3A0-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617255:617770:617953:618111:619305:619390,617255:617770:617953:618111:618598:618661,	617954	618111	617960	617960	Frame_Shift_Del	T	-	p.K704fs
LIHC	TCGA-DD-A3A0-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618667	618667	Frame_Shift_Del	C	-	p.G631fs
LIHC	TCGA-DD-A3A0-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3,ENST00000531088.1,ENST00000349570.7	chr11	621561:621663:621811:621904:624212:624263,	621812	621904	621842	621842	Frame_Shift_Del	G	-	p.P125fs
LIHC	TCGA-DD-A3A0-01	TALDO1	ENST00000530440.1	chr11	747463:747578:755878:756002:758949:759057,747463:747578:755878:756002:759008:759057,	755879	756002	755896	755896	Frame_Shift_Del	C	-	p.P39fs
LIHC	TCGA-DD-A3A0-01	RPLP2	ENST00000530797.1,ENST00000321153.4	chr11	810233:810357:811596:811645:812534:812633,	811597	811645	811617	811617	Frame_Shift_Del	A	-	p.G48fs
LIHC	TCGA-DD-A3A0-01	AP2A2	ENST00000534328.1,ENST00000332231.5,ENST00000525796.1,ENST00000528815.1,ENST00000448903.2	chr11	972217:972255:977094:977224:981197:981299,	977095	977224	977157	977157	Frame_Shift_Del	C	-	p.S179fs
LIHC	TCGA-DD-A3A0-01	AP2A2	ENST00000534328.1,ENST00000332231.5,ENST00000525796.1,ENST00000528815.1,ENST00000448903.2	chr11	977094:977224:981197:981299:984644:984753,	981198	981299	981261	981261	Frame_Shift_Del	A	-	p.K223fs
LIHC	TCGA-DD-A3A0-01	MUC2	ENST00000359061.5,ENST00000441003.2	chr11	1075650:1075921:1077597:1077712:1078095:1078186,	1077598	1077712	1077619	1077619	Frame_Shift_Del	C	-	p.S123fs
LIHC	TCGA-DD-A3A0-01	MUC2	ENST00000441003.2	chr11	1088699:1088847:1090336:1090380:1090781:1090985,	1090337	1090380	1090376	1090376	Frame_Shift_Del	G	-	p.E1225fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1262191	1262191	Frame_Shift_Del	T	-	p.F1364fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1262318	1262318	Frame_Shift_Del	G	-	p.R1406fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263240	1263240	Frame_Shift_Del	C	-	p.R1713fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263578	1263578	Frame_Shift_Del	G	-	p.W1826fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266225	1266225	Frame_Shift_Del	C	-	p.N2708fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266549	1266549	Frame_Shift_Del	C	-	p.H2816fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266765	1266765	Frame_Shift_Del	C	-	p.Y2888fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267023	1267023	Frame_Shift_Del	C	-	p.C2974fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1270345	1270345	Frame_Shift_Del	C	-	p.P4083fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1271438	1271438	Frame_Shift_Del	C	-	p.T4446fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1272961	1272961	Frame_Shift_Del	T	-	p.F4955fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1275923:1276110:1276270:1276496:1276612:1276788,	1276271	1276496	1276461	1276461	Frame_Shift_Del	C	-	p.C5288fs
LIHC	TCGA-DD-A3A0-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1281192:1281315:1281580:1281623:1281855:1281958,	1281581	1281623	1281593	1281593	Frame_Shift_Del	A	-	p.K5649fs
LIHC	TCGA-DD-A3A0-01	TOLLIP	ENST00000527746.1	chr11	1311456:1311639:1316874:1317024:1330695:1330813,	1316875	1317024	1316980	1316980	Frame_Shift_Del	G	-	p.P26fs
LIHC	TCGA-DD-A3A0-01	LSP1	ENST00000406638.2,ENST00000472974.1,ENST00000432093.1,ENST00000405957.2,ENST00000485341.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1	chr11	1905509:1905553:1905729:1905811:1907961:1908096,	1905730	1905811	1905783	1905783	Frame_Shift_Del	G	-	p.W168fs
LIHC	TCGA-DD-A3A0-01	TNNT3	ENST00000453458.1,ENST00000381558.1,ENST00000381579.3,ENST00000381561.4,ENST00000446240.1,ENST00000278317.6,ENST00000381557.2,ENST00000381589.3,ENST00000381548.3,ENST00000492075.1,ENST00000381549.3,ENST00000381563.4,ENST00000360603.3,ENST00000397301.1,ENST00000344578.4,ENST00000397304.2	chr11	1951041:1951058:1953698:1953744:1954950:1955067,	1953699	1953744	1953724	1953724	Frame_Shift_Del	G	-	p.G43fs
LIHC	TCGA-DD-A3A0-01	TH	ENST00000381178.1,ENST00000324155.4,ENST00000352909.3,ENST00000381168.3,ENST00000381175.1	chr11	2187904:2187998:2188116:2188262:2188664:2188715,	2188117	2188262	2188147	2188147	Frame_Shift_Del	G	-	p.Q302fs
LIHC	TCGA-DD-A3A0-01	TRPM5	ENST00000528453.1,ENST00000533060.1,ENST00000533881.1,ENST00000452833.1,ENST00000155858.6	chr11	2434363:2434456:2434705:2434818:2435290:2435436,	2434706	2434818	2434791	2434791	Frame_Shift_Del	C	-	p.D642fs
LIHC	TCGA-DD-A3A0-01	KCNQ1	ENST00000155840.5,ENST00000335475.5	chr11	2604664:2604775:2606441:2606537:2608799:2608922,	2606442	2606537	2606456	2606456	Frame_Shift_Del	G	-	p.S349fs
LIHC	TCGA-DD-A3A0-01	KCNQ1	ENST00000155840.5,ENST00000335475.5	chr11	2604664:2604775:2606441:2606537:2608799:2608922,	2606442	2606537	2606464	2606464	Frame_Shift_Del	C	-	p.A352fs
LIHC	TCGA-DD-A3A0-01	KCNQ1	ENST00000155840.5,ENST00000335475.5	chr11	2609942:2610084:2683190:2683311:2790073:2790149,	2683191	2683311	2683231	2683231	Frame_Shift_Del	T	-	p.H478fs
LIHC	TCGA-DD-A3A0-01	NUP98	ENST00000324932.7,ENST00000524563.1,ENST00000429801.1,ENST00000355260.3,ENST00000359171.4	chr11	3712576:3712719:3714461:3714605:3716678:3716788,	3714462	3714605	3714491	3714491	Frame_Shift_Del	C	-	p.A1428fs
LIHC	TCGA-DD-A3A0-01	NUP98	ENST00000529063.1	chr11	3716748:3716836:3720311:3720578:3723692:3723881,	3720312	3720578	3720396	3720396	Frame_Shift_Del	G	-	p.Q1309fs
LIHC	TCGA-DD-A3A0-01	NUP98	ENST00000324932.7,ENST00000355260.3,ENST00000359171.4	chr11	3721839:3722069:3723692:3724122:3726429:3726586,	3723693	3724122	3723866	3723866	Frame_Shift_Del	T	-	p.K1113fs
LIHC	TCGA-DD-A3A0-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3735047:3735225:3740641:3740780:3741941:3742055,	3740642	3740780	3740668	3740668	Frame_Shift_Del	T	-	p.K791fs
LIHC	TCGA-DD-A3A0-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000527104.1,ENST00000397004.4,ENST00000355260.3,ENST00000397013.2,ENST00000359171.4	chr11	3756420:3756554:3765738:3765879:3774545:3774638,	3765739	3765879	3765751	3765751	Frame_Shift_Del	G	-	p.Q466fs
LIHC	TCGA-DD-A3A0-01	PGAP2	ENST00000464590.1,ENST00000489571.1	chr11	3832496:3832654:3844138:3844223:3845112:3845145,3829523:3829545:3844138:3844223:3844842:3844970,3832496:3832654:3844138:3844223:3844842:3844970,	3844139	3844223	3844192	3844192	Frame_Shift_Del	A	-	p.K6fs
LIHC	TCGA-DD-A3A0-01	STIM1	ENST00000527651.1,ENST00000300737.4	chr11	3877411:3877639:3988781:3988912:4045102:4045217,	3988782	3988912	3988802	3988802	Frame_Shift_Del	C	-	p.P54fs
LIHC	TCGA-DD-A3A0-01	STIM1	ENST00000533343.1,ENST00000527651.1,ENST00000526596.1,ENST00000533977.1,ENST00000300737.4	chr11	4103434:4103581:4104111:4104212:4104492:4104728,	4104112	4104212	4104123	4104123	Frame_Shift_Del	A	-	p.I383fs
LIHC	TCGA-DD-A3A0-01	RRM1	ENST00000423050.2,ENST00000537197.1,ENST00000533349.1,ENST00000531591.1,ENST00000529109.1,ENST00000534285.1,ENST00000532170.1,ENST00000533495.1,ENST00000300738.5	chr11	4143370:4143450:4144412:4144614:4147913:4148047,	4144413	4144614	4144554	4144554	Frame_Shift_Del	G	-	p.L420fs
LIHC	TCGA-DD-A3A0-01	MMP26	ENST00000300762.1,ENST00000380390.1	chr11	5011827:5011976:5012600:5012726:5013193:5013355,	5012601	5012726	5012689	5012689	Frame_Shift_Del	T	-	p.H186fs
LIHC	TCGA-DD-A3A0-01	HBD	ENST00000380299.3	chr11	5254159:5254322:5255220:5255443:5255571:5255713,	5255221	5255443	5255334	5255334	Frame_Shift_Del	C	-	p.V68fs
LIHC	TCGA-DD-A3A0-01	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687267	5687267	Frame_Shift_Del	T	-	p.N271fs
LIHC	TCGA-DD-A3A0-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717507	5717507	Frame_Shift_Del	C	-	p.C15fs
LIHC	TCGA-DD-A3A0-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717670	5717670	Frame_Shift_Del	C	-	p.P70fs
LIHC	TCGA-DD-A3A0-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6413347	6413347	Frame_Shift_Del	G	-	p.W351fs
LIHC	TCGA-DD-A3A0-01	SMPD1	ENST00000531303.1	chr11	6413422:6413426:6414445:6414617:6414846:6414923,6412616:6413386:6414445:6414617:6414846:6414923,6412613:6412733:6414445:6414617:6414846:6414923,	6414446	6414617	6414450	6414450	Frame_Shift_Del	G	-	p.G367fs
LIHC	TCGA-DD-A3A0-01	APBB1	ENST00000608704.1,ENST00000524626.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000529519.1	chr11	6417015:6417192:6417329:6417445:6422218:6422302,	6417330	6417445	6417425	6417425	Frame_Shift_Del	C	-	p.A565fs
LIHC	TCGA-DD-A3A0-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6423311:6423439:6423805:6423955:6424374:6424438,	6423806	6423955	6423808	6423808	Frame_Shift_Del	C	-	p.E418fs
LIHC	TCGA-DD-A3A0-01	DNHD1	ENST00000254579.6,ENST00000530197.1,ENST00000529821.1,ENST00000533635.1,ENST00000527990.2	chr11	6591476:6591626:6591847:6592653:6592865:6593044,	6591848	6592653	6591901	6591901	Frame_Shift_Del	C	-	p.P4387fs
LIHC	TCGA-DD-A3A0-01	RRP8	ENST00000533907.1	chr11	6621898:6622005:6622155:6622832:6623081:6623445,	6622156	6622832	6622204	6622204	Frame_Shift_Del	A	-	p.F333fs
LIHC	TCGA-DD-A3A0-01	RRP8	ENST00000254605.6	chr11	6621898:6622005:6622155:6622285:6622378:6622832,	6622156	6622285	6622204	6622204	Frame_Shift_Del	A	-	p.F333fs
LIHC	TCGA-DD-A3A0-01	PPFIBP2	ENST00000299492.4,ENST00000527790.1	chr11	7570670:7570770:7586783:7586998:7614362:7614455,	7586784	7586998	7586857	7586857	Frame_Shift_Del	C	-	p.N46fs
LIHC	TCGA-DD-A3A0-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000524495.1,ENST00000530582.1,ENST00000533792.1	chr11	7670030:7670142:7670377:7670466:7670762:7670885,	7670378	7670466	7670419	7670419	Frame_Shift_Del	T	-	p.F651fs
LIHC	TCGA-DD-A3A0-01	TUB	ENST00000534099.1,ENST00000299506.2,ENST00000305253.4	chr11	8115592:8115736:8117044:8117212:8118231:8118353,	8117045	8117212	8117161	8117161	Frame_Shift_Del	G	-	p.G228fs
LIHC	TCGA-DD-A3A0-01	TUB	ENST00000534099.1,ENST00000299506.2,ENST00000305253.4	chr11	8122049:8122148:8122372:8122544:8123032:8123327,	8122373	8122544	8122434	8122434	Frame_Shift_Del	A	-	p.Q481fs
LIHC	TCGA-DD-A3A0-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752567	8752567	Frame_Shift_Del	G	-	p.P90fs
LIHC	TCGA-DD-A3A0-01	AKIP1	ENST00000534506.1	chr11	8932745:8932770:8932990:8933218:8933999:8934080,8932745:8932770:8932990:8933218:8936372:8936477,	8932991	8933218	8933008	8933008	Frame_Shift_Del	T	-	p.C4fs
LIHC	TCGA-DD-A3A0-01	AKIP1	ENST00000299576.5,ENST00000396648.2,ENST00000309377.4,ENST00000534147.1,ENST00000530281.1	chr11	8936372:8936477:8938833:8938914:8940883:8940961,	8938834	8938914	8938836	8938836	Frame_Shift_Del	A	-	p.R110fs
LIHC	TCGA-DD-A3A0-01	C11orf16	ENST00000326053.5	chr11	8942840:8943062:8947009:8947654:8948486:8948721,	8947010	8947654	8947267	8947267	Frame_Shift_Del	A	-	p.L316fs
LIHC	TCGA-DD-A3A0-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9048910:9049108:9051430:9051592,	9048911	9049108	9048996	9048996	Frame_Shift_Del	G	-	p.P872fs
LIHC	TCGA-DD-A3A0-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2	chr11	9052304:9052472:9055172:9055343:9068902:9069109,	9055173	9055343	9055327	9055327	Frame_Shift_Del	C	-	p.G673fs
LIHC	TCGA-DD-A3A0-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9068902:9069109:9069489:9069645:9072152:9072257,	9069490	9069645	9069501	9069501	Frame_Shift_Del	T	-	p.K595fs
LIHC	TCGA-DD-A3A0-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000531429.1,ENST00000520467.1	chr11	9081954:9082071:9087437:9087527:9088243:9088297,	9087438	9087527	9087468	9087468	Frame_Shift_Del	C	-	p.D274fs
LIHC	TCGA-DD-A3A0-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000524446.1	chr11	9166608:9166660:9167216:9167362:9171627:9171720,9166608:9166660:9167216:9167362:9168576:9168698,	9167217	9167362	9167317	9167317	Frame_Shift_Del	C	-	p.G968fs
LIHC	TCGA-DD-A3A0-01	TMEM41B	ENST00000524543.1,ENST00000533723.1,ENST00000527813.1,ENST00000528080.1	chr11	9316805:9316934:9321130:9321248:9335867:9336114,	9321131	9321248	9321149	9321149	Frame_Shift_Del	T	-	p.N74fs
LIHC	TCGA-DD-A3A0-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500145	10500145	Frame_Shift_Del	C	-	p.G107fs
LIHC	TCGA-DD-A3A0-01	AMPD3	ENST00000534047.1	chr11	10517116:10517280:10518307:10518485:10521632:10521796,	10518308	10518485	10518423	10518423	Frame_Shift_Del	C	-	p.P340fs
LIHC	TCGA-DD-A3A0-01	AMPD3	ENST00000529834.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000444303.2	chr11	10517116:10517280:10518358:10518485:10521632:10521796,	10518359	10518485	10518423	10518423	Frame_Shift_Del	C	-	p.P340fs
LIHC	TCGA-DD-A3A0-01	LYVE1	ENST00000531706.1,ENST00000256178.3	chr11	10582041:10582347:10585486:10585626:10585749:10585777,	10585487	10585626	10585538	10585538	Frame_Shift_Del	A	-	p.W116fs
LIHC	TCGA-DD-A3A0-01	MRVI1	ENST00000527509.2,ENST00000531107.1,ENST00000421747.1,ENST00000534266.2,ENST00000552103.1,ENST00000424001.1,ENST00000545852.1,ENST00000529448.1,ENST00000547195.1,ENST00000558540.1,ENST00000436272.1,ENST00000423302.2	chr11	10645324:10645403:10647512:10648130:10649262:10649304,	10647513	10648130	10648060	10648060	Frame_Shift_Del	G	-	p.P183fs
LIHC	TCGA-DD-A3A0-01	GALNT18	ENST00000227756.4	chr11	11292422:11292837:11314575:11314740:11348632:11348728,	11314576	11314740	11314598	11314598	Frame_Shift_Del	T	-	p.K552fs
LIHC	TCGA-DD-A3A0-01	FAR1	ENST00000354817.3,ENST00000532701.1	chr11	13729446:13729626:13732239:13732417:13733310:13733355,	13732240	13732417	13732276	13732276	Frame_Shift_Del	A	-	p.P194fs
LIHC	TCGA-DD-A3A0-01	COPB1	ENST00000249923.3,ENST00000439561.2	chr11	14496040:14496161:14497330:14497491:14498464:14498561,	14497331	14497491	14497444	14497444	Frame_Shift_Del	T	-	p.K501fs
LIHC	TCGA-DD-A3A0-01	CYP2R1	ENST00000334636.5	chr11	14902179:14902314:14907321:14907463:14912698:14913186,14902179:14902314:14907321:14907463:14911977:14912015,14902179:14902314:14907321:14907463:14913526:14913798,	14907322	14907463	14907371	14907371	Frame_Shift_Del	A	-	p.C10fs
LIHC	TCGA-DD-A3A0-01	INSC	ENST00000379554.3,ENST00000424273.1,ENST00000525218.1,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15170675:15170776:15197286:15197632:15198656:15198709,	15197287	15197632	15197622	15197622	Frame_Shift_Del	A	-	p.E178fs
LIHC	TCGA-DD-A3A0-01	INSC	ENST00000379554.3,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15199869:15199993:15212246:15212360:15222369:15222495,	15212247	15212360	15212258	15212258	Frame_Shift_Del	A	-	p.R244fs
LIHC	TCGA-DD-A3A0-01	INSC	ENST00000379554.3,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15199869:15199993:15212246:15212360:15222369:15222495,	15212247	15212360	15212330	15212330	Frame_Shift_Del	G	-	p.E268fs
LIHC	TCGA-DD-A3A0-01	INSC	ENST00000379554.3,ENST00000379556.3,ENST00000530161.1,ENST00000528567.1	chr11	15212246:15212360:15222369:15222495:15243022:15243194,	15222370	15222495	15222429	15222429	Frame_Shift_Del	C	-	p.Y298fs
LIHC	TCGA-DD-A3A0-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16119154:16119234:16133348:16133469:16205431:16205500,	16133349	16133469	16133369	16133369	Frame_Shift_Del	G	-	p.P293fs
LIHC	TCGA-DD-A3A0-01	PLEKHA7	ENST00000355661.3,ENST00000531066.1,ENST00000448080.2	chr11	16838346:16838869:16847666:16848137:16863093:16863269,	16847667	16848137	16847845	16847845	Frame_Shift_Del	G	-	p.Q389fs
LIHC	TCGA-DD-A3A0-01	RPS13	ENST00000526895.1,ENST00000525828.1,ENST00000525634.1	chr11	17096643:17096744:17097000:17097170:17098714:17098793,	17097001	17097170	17097040	17097040	Frame_Shift_Del	T	-	p.K94fs
LIHC	TCGA-DD-A3A0-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17140191:17140286:17140766:17140860:17141332:17141521,	17140767	17140860	17140773	17140773	Frame_Shift_Del	A	-	p.F978fs
LIHC	TCGA-DD-A3A0-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17144248:17144360:17150846:17151014:17153462:17153585,	17150847	17151014	17150966	17150966	Frame_Shift_Del	A	-	p.L760fs
LIHC	TCGA-DD-A3A0-01	SAAL1	ENST00000524803.1	chr11	18102957:18103050:18105081:18105278:18108412:18108507,	18105082	18105278	18105214	18105214	Frame_Shift_Del	T	-	p.K369fs
LIHC	TCGA-DD-A3A0-01	SAAL1	ENST00000534721.1	chr11	18102957:18103050:18105081:18105256:18108412:18108507,	18105082	18105256	18105214	18105214	Frame_Shift_Del	T	-	p.K369fs
LIHC	TCGA-DD-A3A0-01	SAAL1	ENST00000300013.4	chr11	18102957:18103050:18105081:18105275:18108412:18108507,	18105082	18105275	18105214	18105214	Frame_Shift_Del	T	-	p.K369fs
LIHC	TCGA-DD-A3A0-01	HPS5	ENST00000399287.3	chr11	18333502:18333571:18339297:18339454:18343492:18343635,18333502:18333571:18339297:18339454:18343679:18343721,	18339298	18339454	18339352	18339352	Frame_Shift_Del	A	-	p.F18fs
LIHC	TCGA-DD-A3A0-01	GTF2H1	ENST00000265963.4,ENST00000453096.2,ENST00000418116.2,ENST00000543932.1	chr11	18354606:18354775:18357300:18357493:18359655:18359821,	18357301	18357493	18357380	18357380	Frame_Shift_Del	T	-	p.H78fs
LIHC	TCGA-DD-A3A0-01	PTPN5	ENST00000477854.1,ENST00000396170.1,ENST00000358540.2,ENST00000396168.1,ENST00000396171.4,ENST00000396167.2	chr11	18750999:18751113:18751204:18751365:18754138:18754249,	18751205	18751365	18751360	18751360	Frame_Shift_Del	C	-	p.G413fs
LIHC	TCGA-DD-A3A0-01	SLC6A5	ENST00000525748.1	chr11	20622674:20623211:20625831:20625970:20628552:20628684,	20625832	20625970	20625940	20625940	Frame_Shift_Del	T	-	p.F217fs
LIHC	TCGA-DD-A3A0-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21555919:21556060:21581734:21581928:21592309:21592486,	21581735	21581928	21581830	21581830	Frame_Shift_Del	C	-	p.P656fs
LIHC	TCGA-DD-A3A0-01	LUZP2	ENST00000336930.6,ENST00000533227.1	chr11	24759766:24759848:24784791:24784854:24927536:24927599,	24784792	24784854	24784797	24784797	Frame_Shift_Del	T	-	p.N27fs
LIHC	TCGA-DD-A3A0-01	SLC5A12	ENST00000280467.6,ENST00000527405.1,ENST00000533617.1,ENST00000396005.3	chr11	26725077:26725218:26725339:26725494:26730858:26730926,	26725340	26725494	26725394	26725394	Frame_Shift_Del	C	-	p.G209fs
LIHC	TCGA-DD-A3A0-01	LGR4	ENST00000379214.4	chr11	27412640:27412712:27413993:27414065:27493664:27493861,27412640:27412712:27413993:27414065:27434335:27434407,	27413994	27414065	27414014	27414014	Frame_Shift_Del	C	-	p.G103fs
LIHC	TCGA-DD-A3A0-01	KIF18A	ENST00000263181.6	chr11	28083941:28084063:28090805:28090970:28098553:28098716,	28090806	28090970	28090907	28090907	Frame_Shift_Del	T	-	p.R498fs
LIHC	TCGA-DD-A3A0-01	MPPED2	ENST00000448418.2,ENST00000358117.5	chr11	30526282:30526380:30557540:30557722:30601792:30602041,30516842:30517068:30557540:30557722:30601792:30602041,	30557541	30557722	30557684	30557684	Frame_Shift_Del	C	-	p.G56fs
LIHC	TCGA-DD-A3A0-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P389fs
LIHC	TCGA-DD-A3A0-01	RCN1	ENST00000054950.3	chr11	32112449:32112996:32118689:32118883:32119895:32120004,	32118690	32118883	32118727	32118727	Frame_Shift_Del	T	-	p.F98fs
LIHC	TCGA-DD-A3A0-01	WT1	ENST00000452863.3,ENST00000448076.3,ENST00000379079.2	chr11	32410587:32410725:32413526:32413610:32414211:32414301,	32413527	32413610	32413574	32413574	Frame_Shift_Del	T	-	p.K459fs
LIHC	TCGA-DD-A3A0-01	WT1	ENST00000530998.1,ENST00000332351.3,ENST00000379077.3	chr11	32410587:32410725:32413517:32413610:32414211:32414301,	32413518	32413610	32413574	32413574	Frame_Shift_Del	T	-	p.K459fs
LIHC	TCGA-DD-A3A0-01	WT1	ENST00000452863.3,ENST00000448076.3,ENST00000379079.2	chr11	32410587:32410725:32413526:32413610:32414211:32414301,	32413527	32413610	32413587	32413587	Frame_Shift_Del	T	-	p.T455fs
LIHC	TCGA-DD-A3A0-01	WT1	ENST00000530998.1,ENST00000332351.3,ENST00000379077.3	chr11	32410587:32410725:32413517:32413610:32414211:32414301,	32413518	32413610	32413587	32413587	Frame_Shift_Del	T	-	p.T455fs
LIHC	TCGA-DD-A3A0-01	WT1	ENST00000452863.3,ENST00000530998.1,ENST00000332351.3,ENST00000379077.3,ENST00000448076.3,ENST00000379079.2	chr11	32413526:32413610:32414211:32414301:32417802:32417953,	32414212	32414301	32414254	32414254	Frame_Shift_Del	A	-	p.S433fs
LIHC	TCGA-DD-A3A0-01	EIF3M	ENST00000531120.1,ENST00000525054.1,ENST00000524896.1	chr11	32622234:32622378:32623307:32623368:32623824:32623848,	32623308	32623368	32623334	32623334	Frame_Shift_Del	A	-	p.K324fs
LIHC	TCGA-DD-A3A0-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635039	32635039	Frame_Shift_Del	T	-	p.N942fs
LIHC	TCGA-DD-A3A0-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635151	32635151	Frame_Shift_Del	A	-	p.S905fs
LIHC	TCGA-DD-A3A0-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635435	32635435	Frame_Shift_Del	T	-	p.K810fs
LIHC	TCGA-DD-A3A0-01	QSER1	ENST00000527788.1,ENST00000399302.2,ENST00000524678.1	chr11	32990591:32990689:32994942:32995095:32996793:32996889,	32994943	32995095	32994957	32994957	Frame_Shift_Del	T	-	p.S1611fs
LIHC	TCGA-DD-A3A0-01	DEPDC7	ENST00000311388.3,ENST00000241051.3	chr11	33047204:33047595:33049231:33049359:33050148:33050338,	33049232	33049359	33049321	33049321	Frame_Shift_Del	C	-	p.S176fs
LIHC	TCGA-DD-A3A0-01	DEPDC7	ENST00000311388.3,ENST00000241051.3	chr11	33049231:33049359:33050148:33050338:33052923:33053135,	33050149	33050338	33050250	33050250	Frame_Shift_Del	A	-	p.K223fs
LIHC	TCGA-DD-A3A0-01	TCP11L1	ENST00000528107.1,ENST00000531632.2,ENST00000432887.1,ENST00000527661.1,ENST00000334274.4,ENST00000324357.9	chr11	33080517:33080641:33083075:33083272:33087375:33087557,	33083076	33083272	33083158	33083158	Frame_Shift_Del	G	-	p.V286fs
LIHC	TCGA-DD-A3A0-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308070	33308070	Frame_Shift_Del	A	-	p.E37fs
LIHC	TCGA-DD-A3A0-01	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000389645.3,ENST00000533657.1,ENST00000529307.1,ENST00000530820.1	chr11	34111725:34111836:34112075:34112225:34113452:34113603,	34112076	34112225	34112090	34112090	Frame_Shift_Del	A	-	p.L473fs
LIHC	TCGA-DD-A3A0-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34664174:34664274:34667985:34668231:34670565:34670628,	34667986	34668231	34667997	34667997	Frame_Shift_Del	T	-	p.F38fs
LIHC	TCGA-DD-A3A0-01	PDHX	ENST00000430469.2,ENST00000227868.4	chr11	34938187:34938362:34952950:34953031:34969052:34969150,	34952951	34953031	34953022	34953022	Frame_Shift_Del	A	-	p.K64fs
LIHC	TCGA-DD-A3A0-01	PDHX	ENST00000448838.3,ENST00000227868.4	chr11	34981966:34982065:34988186:34988361:34991685:34991833,	34988187	34988361	34988311	34988311	Frame_Shift_Del	C	-	p.P241fs
LIHC	TCGA-DD-A3A0-01	CD44	ENST00000425428.2	chr11	35160852:35160917:35198121:35198287:35208378:35208447,	35198122	35198287	35198219	35198219	Frame_Shift_Del	T	-	p.A55fs
LIHC	TCGA-DD-A3A0-01	CD44	ENST00000449691.2	chr11	35226063:35226187:35227658:35227790:35229651:35229711,35223225:35223334:35227658:35227790:35229651:35229711,	35227659	35227790	35227753	35227753	Frame_Shift_Del	C	-	p.H459fs
LIHC	TCGA-DD-A3A0-01	CD44	ENST00000526553.1	chr11	35226063:35226187:35227661:35227790:35229651:35229711,	35227662	35227790	35227753	35227753	Frame_Shift_Del	C	-	p.H459fs
LIHC	TCGA-DD-A3A0-01	CD44	ENST00000425428.2,ENST00000526669.2,ENST00000434472.2,ENST00000527326.1,ENST00000360158.4,ENST00000433354.2,ENST00000525688.1,ENST00000415148.2,ENST00000428726.2,ENST00000449691.2,ENST00000437706.2,ENST00000278385.6,ENST00000263398.6,ENST00000433892.2,ENST00000279452.6,ENST00000352818.4	chr11	35240890:35240934:35243200:35243279:35250675:35250711,	35243201	35243279	35243222	35243222	Frame_Shift_Del	C	-	p.S275fs
LIHC	TCGA-DD-A3A0-01	SLC1A2	ENST00000606205.1,ENST00000395753.1,ENST00000278379.3,ENST00000531628.1,ENST00000395750.1	chr11	35308303:35308498:35313833:35314067:35323065:35323075,	35313834	35314067	35313846	35313846	Frame_Shift_Del	C	-	p.G360fs
LIHC	TCGA-DD-A3A0-01	LDLRAD3	ENST00000315571.5,ENST00000528989.1	chr11	36119879:36120011:36248634:36248980:36250709:36250761,	36248635	36248980	36248840	36248840	Frame_Shift_Del	G	-	p.L220fs
LIHC	TCGA-DD-A3A0-01	API5	ENST00000526394.1,ENST00000420461.2,ENST00000378852.3,ENST00000534600.1,ENST00000531273.1,ENST00000455725.2	chr11	43351535:43351608:43352057:43352114:43356827:43356904,	43352058	43352114	43352090	43352090	Frame_Shift_Del	A	-	p.T418fs
LIHC	TCGA-DD-A3A0-01	TTC17	ENST00000039989.4,ENST00000525135.1	chr11	43469551:43469672:43471631:43471791:43472731:43472815,	43471632	43471791	43471738	43471738	Frame_Shift_Del	G	-	p.G965fs
LIHC	TCGA-DD-A3A0-01	ALKBH3	ENST00000532129.1	chr11	43913590:43913679:43923065:43923275:43940587:43940592,43911311:43911378:43923065:43923275:43940587:43940592,	43923066	43923275	43923230	43923230	Frame_Shift_Del	T	-	p.S208fs
LIHC	TCGA-DD-A3A0-01	TP53I11	ENST00000533955.1,ENST00000533443.1,ENST00000525138.1,ENST00000531928.2,ENST00000527685.1,ENST00000308212.5,ENST00000525683.1,ENST00000354556.4,ENST00000530035.1,ENST00000528473.1,ENST00000533940.1,ENST00000531130.2,ENST00000532921.1,ENST00000525145.1,ENST00000395648.3,ENST00000525680.1	chr11	44958871:44958903:44959105:44959164:44959757:44959917,	44959106	44959164	44959111	44959111	Frame_Shift_Del	C	-	p.G61fs
LIHC	TCGA-DD-A3A0-01	MAPK8IP1	ENST00000241014.2,ENST00000395629.2	chr11	45925539:45925712:45926005:45926115:45926268:45926385,	45926006	45926115	45926014	45926014	Frame_Shift_Del	A	-	p.K549fs
LIHC	TCGA-DD-A3A0-01	MAPK8IP1	ENST00000241014.2,ENST00000395629.2	chr11	45926521:45926592:45926701:45926800:45927199:45928016,	45926702	45926800	45926782	45926782	Frame_Shift_Del	C	-	p.A672fs
LIHC	TCGA-DD-A3A0-01	PHF21A	ENST00000527401.1,ENST00000418153.2,ENST00000257821.4	chr11	45958044:45958120:45959707:45959863:45967390:45967420,	45959708	45959863	45959760	45959760	Frame_Shift_Del	G	-	p.P519fs
LIHC	TCGA-DD-A3A0-01	PHF21A	ENST00000527753.1	chr11	45959769:45959863:45970436:45970497:45970952:45971032,	45970437	45970497	45970450	45970450	Frame_Shift_Del	C	-	p.G425fs
LIHC	TCGA-DD-A3A0-01	PHF21A	ENST00000527401.1,ENST00000418153.2,ENST00000323180.6,ENST00000257821.4	chr11	45975077:45975176:45986865:45987159:45991365:45991452,	45986866	45987159	45986869	45986869	Frame_Shift_Del	T	-	p.K331fs
LIHC	TCGA-DD-A3A0-01	AMBRA1	ENST00000533727.1,ENST00000314845.3	chr11	46563494:46564531:46564801:46564948:46565524:46565591,	46564802	46564948	46564935	46564935	Frame_Shift_Del	G	-	p.P211fs
LIHC	TCGA-DD-A3A0-01	CKAP5	ENST00000533413.1,ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46782161:46782334:46783549:46783743:46784176:46784312,	46783550	46783743	46783587	46783587	Frame_Shift_Del	T	-	p.N1395fs
LIHC	TCGA-DD-A3A0-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46801743:46801869:46801977:46802035:46804823:46804918,	46801978	46802035	46801982	46801982	Frame_Shift_Del	T	-	p.N768fs
LIHC	TCGA-DD-A3A0-01	PACSIN3	ENST00000531226.1	chr11	47203956:47204110:47204224:47204360:47204554:47204616,	47204225	47204360	47204238	47204238	Frame_Shift_Del	C	-	p.G14fs
LIHC	TCGA-DD-A3A0-01	PACSIN3	ENST00000524509.1,ENST00000539589.1,ENST00000298838.6,ENST00000530405.1,ENST00000525725.1,ENST00000532457.1,ENST00000528462.1	chr11	47203956:47204110:47204224:47204315:47204554:47204616,	47204225	47204315	47204238	47204238	Frame_Shift_Del	C	-	p.G14fs
LIHC	TCGA-DD-A3A0-01	NR1H3	ENST00000529540.1,ENST00000412937.1,ENST00000420369.1,ENST00000405853.3,ENST00000449369.1,ENST00000436029.1,ENST00000436778.1,ENST00000467728.1,ENST00000527464.1,ENST00000395397.3,ENST00000441012.2,ENST00000481020.1,ENST00000481889.2,ENST00000405576.1,ENST00000407404.1,ENST00000444396.1	chr11	47281341:47281530:47281959:47282226:47282791:47282831,	47281960	47282226	47282041	47282041	Frame_Shift_Del	C	-	p.A105fs
LIHC	TCGA-DD-A3A0-01	NR1H3	ENST00000481020.1,ENST00000481889.2	chr11	47282791:47283000:47283097:47283569:47289463:47289559,	47283098	47283569	47283440	47283440	Frame_Shift_Del	C	-	p.P306fs
LIHC	TCGA-DD-A3A0-01	NR1H3	ENST00000481020.1,ENST00000481889.2	chr11	47282791:47283000:47283097:47283569:47289463:47289559,	47283098	47283569	47283563	47283563	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-DD-A3A0-01	NR1H3	ENST00000531660.1,ENST00000405853.3,ENST00000405576.1,ENST00000527949.1,ENST00000407404.1	chr11	47283097:47283277:47283469:47283569:47289463:47289559,47282791:47283000:47283469:47283569:47289463:47289559,	47283470	47283569	47283563	47283563	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-DD-A3A0-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000402799.1,ENST00000311027.5,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47303931:47304167:47304363:47304520:47305728:47305832,	47304364	47304520	47304369	47304369	Frame_Shift_Del	T	-	p.F571fs
LIHC	TCGA-DD-A3A0-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000402799.1,ENST00000311027.5,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47304363:47304520:47305728:47305832:47305925:47306116,	47305729	47305832	47305776	47305776	Frame_Shift_Del	C	-	p.S637fs
LIHC	TCGA-DD-A3A0-01	MADD	ENST00000395336.3,ENST00000311027.5	chr11	47312160:47312367:47314093:47314147:47315433:47315534,	47314094	47314147	47314139	47314139	Frame_Shift_Del	A	-	p.E1136fs
LIHC	TCGA-DD-A3A0-01	SLC39A13	ENST00000354884.4,ENST00000533076.1,ENST00000362021.4	chr11	47434950:47435058:47435147:47435237:47435975:47436026,	47435148	47435237	47435194	47435194	Frame_Shift_Del	C	-	p.T231fs
LIHC	TCGA-DD-A3A0-01	PSMC3	ENST00000527906.1	chr11	47446671:47446797:47447417:47447497:47447755:47447776,	47447418	47447497	47447450	47447450	Frame_Shift_Del	G	-	p.Q43fs
LIHC	TCGA-DD-A3A0-01	PSMC3	ENST00000298852.3,ENST00000528362.1,ENST00000524447.2,ENST00000531051.2,ENST00000531653.1	chr11	47446671:47446797:47447417:47447501:47447755:47447776,	47447418	47447501	47447450	47447450	Frame_Shift_Del	G	-	p.Q43fs
LIHC	TCGA-DD-A3A0-01	RAPSN	ENST00000298854.2	chr11	47462721:47462763:47463162:47463285:47463374:47463473,	47463163	47463285	47463203	47463203	Frame_Shift_Del	C	-	p.G291fs
LIHC	TCGA-DD-A3A0-01	CELF1	ENST00000395292.2,ENST00000531165.1,ENST00000361904.3,ENST00000534614.1	chr11	47497007:47497073:47498397:47498511:47498848:47498977,	47498398	47498511	47498507	47498507	Frame_Shift_Del	C	-	p.G326fs
LIHC	TCGA-DD-A3A0-01	CELF1	ENST00000532048.1,ENST00000310513.5,ENST00000358597.3,ENST00000395290.2	chr11	47497007:47497073:47498397:47498508:47498848:47498977,	47498398	47498508	47498507	47498507	Frame_Shift_Del	C	-	p.G326fs
LIHC	TCGA-DD-A3A0-01	NUP160	ENST00000378460.2	chr11	47801894:47801999:47804624:47804750:47806473:47806615,	47804625	47804750	47804701	47804701	Frame_Shift_Del	A	-	p.L1347fs
LIHC	TCGA-DD-A3A0-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1,ENST00000528501.1	chr11	47837497:47837581:47839607:47839676:47840925:47841010,	47839608	47839676	47839653	47839653	Frame_Shift_Del	A	-	p.F462fs
LIHC	TCGA-DD-A3A0-01	PTPRJ	ENST00000440289.2,ENST00000526550.1,ENST00000418331.2	chr11	48131609:48131628:48134298:48134535:48142554:48142651,	48134299	48134535	48134441	48134441	Frame_Shift_Del	T	-	p.D86fs
LIHC	TCGA-DD-A3A0-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49168302:49168497:49170190:49170283:49175397:49175461,	49170191	49170283	49170195	49170195	Frame_Shift_Del	A	-	p.Y672fs
LIHC	TCGA-DD-A3A0-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000356696.3,ENST00000533034.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49178268:49178359:49179503:49179595:49186256:49186324,	49179504	49179595	49179535	49179535	Frame_Shift_Del	T	-	p.S486fs
LIHC	TCGA-DD-A3A0-01	TNKS1BP1	ENST00000528882.1	chr11	57085291:57085361:57087538:57088186:57089265:57089424,	57087539	57088186	57087609	57087609	Frame_Shift_Del	C	-	p.G224fs
LIHC	TCGA-DD-A3A0-01	TNKS1BP1	ENST00000532437.1,ENST00000358252.3	chr11	57085291:57085361:57087552:57088186:57089265:57089424,	57087553	57088186	57087609	57087609	Frame_Shift_Del	C	-	p.G224fs
LIHC	TCGA-DD-A3A0-01	SSRP1	ENST00000526696.1,ENST00000278412.2,ENST00000529002.1	chr11	57100112:57100329:57100432:57100623:57100908:57101014,	57100433	57100623	57100558	57100558	Frame_Shift_Del	G	-	p.Q138fs
LIHC	TCGA-DD-A3A0-01	UBE2L6	ENST00000287156.4	chr11	57321909:57322096:57327809:57327905:57335057:57335280,	57327810	57327905	57327833	57327833	Frame_Shift_Del	C	-	p.V34fs
LIHC	TCGA-DD-A3A0-01	SERPING1	ENST00000531133.1	chr11	57367351:57367850:57369507:57369642:57373482:57373686,57365743:57365794:57369507:57369642:57379189:57379409,57365743:57365794:57369507:57369642:57373482:57373686,	57369508	57369642	57369536	57369536	Frame_Shift_Del	G	-	p.L227fs
LIHC	TCGA-DD-A3A0-01	YPEL4	ENST00000534810.1,ENST00000529776.1	chr11	57414223:57414267:57414439:57414675:57417157:57417248,	57414440	57414675	57414539	57414539	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-DD-A3A0-01	YPEL4	ENST00000532314.1	chr11	57414223:57414267:57414439:57414764:57417157:57417248,57413822:57413878:57414439:57414764:57417157:57417248,	57414440	57414764	57414539	57414539	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-DD-A3A0-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1,ENST00000529447.1	chr11	57463391:57463515:57464232:57464345:57466030:57466307,	57464233	57464345	57464248	57464248	Frame_Shift_Del	C	-	p.A342fs
LIHC	TCGA-DD-A3A0-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425006	59425006	Frame_Shift_Del	T	-	p.Q207fs
LIHC	TCGA-DD-A3A0-01	PATL1	ENST00000300146.9	chr11	59426338:59426419:59426724:59426942:59434325:59434437,	59426725	59426942	59426729	59426729	Frame_Shift_Del	A	-	p.L114fs
LIHC	TCGA-DD-A3A0-01	TCN1	ENST00000257264.3,ENST00000534531.1	chr11	59623415:59623531:59626549:59626740:59628999:59629152,	59626550	59626740	59626598	59626598	Frame_Shift_Del	T	-	p.K233fs
LIHC	TCGA-DD-A3A0-01	TCN1	ENST00000533734.1	chr11	59626654:59626740:59628999:59629152:59630054:59630108,	59629000	59629152	59629135	59629135	Frame_Shift_Del	G	-	p.L141fs
LIHC	TCGA-DD-A3A0-01	TCN1	ENST00000257264.3,ENST00000534531.1	chr11	59626654:59626740:59628999:59629155:59630054:59630108,	59629000	59629155	59629135	59629135	Frame_Shift_Del	G	-	p.L141fs
LIHC	TCGA-DD-A3A0-01	MS4A7	ENST00000300184.3	chr11	60150601:60150761:60152560:60152695:60154189:60154246,	60152561	60152695	60152613	60152613	Frame_Shift_Del	T	-	p.V67fs
LIHC	TCGA-DD-A3A0-01	MS4A5	ENST00000300190.2	chr11	60199883:60199940:60201237:60201390:60215121:60215265,	60201238	60201390	60201261	60201261	Frame_Shift_Del	T	-	p.N121fs
LIHC	TCGA-DD-A3A0-01	MS4A8	ENST00000532953.1,ENST00000529752.1	chr11	60467227:60467248:60468332:60468552:60470850:60470959,	60468333	60468552	60468549	60468549	Frame_Shift_Del	G	-	p.L72fs
LIHC	TCGA-DD-A3A0-01	MS4A8	ENST00000450141.2	chr11	60467227:60467248:60468449:60468552:60470850:60470959,	60468450	60468552	60468549	60468549	Frame_Shift_Del	G	-	p.L72fs
LIHC	TCGA-DD-A3A0-01	SLC15A3	ENST00000227880.3	chr11	60706951:60707110:60708593:60708762:60711160:60711264,60706951:60707110:60708593:60708762:60709506:60709611,	60708594	60708762	60708613	60708613	Frame_Shift_Del	A	-	p.F419fs
LIHC	TCGA-DD-A3A0-01	SLC15A3	ENST00000227880.3,ENST00000536491.1	chr11	60706951:60707110:60709506:60709617:60711160:60711264,60708680:60708762:60709506:60709617:60711160:60711264,	60709507	60709617	60709533	60709533	Frame_Shift_Del	G	-	p.L361fs
LIHC	TCGA-DD-A3A0-01	CD6	ENST00000346437.4,ENST00000313421.7,ENST00000344028.5	chr11	60785419:60785485:60785760:60785865:60786725:60786793,	60785761	60785865	60785766	60785766	Frame_Shift_Del	C	-	p.P616fs
LIHC	TCGA-DD-A3A0-01	CYB561A3	ENST00000294072.4,ENST00000537364.1,ENST00000536915.1,ENST00000426130.2,ENST00000447532.2,ENST00000542361.1	chr11	61120457:61120611:61121255:61121464:61129204:61129291,61120457:61120611:61121255:61121464:61124001:61124200,	61121256	61121464	61121421	61121421	Frame_Shift_Del	T	-	p.K93fs
LIHC	TCGA-DD-A3A0-01	CPSF7	ENST00000477890.2	chr11	61183137:61183256:61183576:61183634:61183835:61183991,	61183577	61183634	61183584	61183584	Frame_Shift_Del	G	-	p.H363fs
LIHC	TCGA-DD-A3A0-01	CPSF7	ENST00000537162.1,ENST00000544669.1,ENST00000394888.4,ENST00000340437.4	chr11	61183971:61183991:61187393:61187566:61188861:61189080,61183971:61183991:61187393:61187566:61187941:61188002,	61187394	61187566	61187482	61187482	Frame_Shift_Del	T	-	p.K197fs
LIHC	TCGA-DD-A3A0-01	CPSF7	ENST00000535222.1,ENST00000544585.1,ENST00000413232.1,ENST00000539952.1,ENST00000477890.2,ENST00000448745.1,ENST00000439958.3	chr11	61183971:61183991:61187420:61187566:61187941:61188002,	61187421	61187566	61187482	61187482	Frame_Shift_Del	T	-	p.K197fs
LIHC	TCGA-DD-A3A0-01	MYRF	ENST00000278836.5,ENST00000389602.4,ENST00000265460.5,ENST00000537318.1	chr11	61546759:61546895:61546969:61547042:61547313:61547402,	61546970	61547042	61547022	61547022	Frame_Shift_Del	C	-	p.P744fs
LIHC	TCGA-DD-A3A0-01	MYRF	ENST00000327797.1	chr11	61546759:61546895:61546969:61547048:61547313:61547402,	61546970	61547048	61547022	61547022	Frame_Shift_Del	C	-	p.P744fs
LIHC	TCGA-DD-A3A0-01	MYRF	ENST00000278836.5,ENST00000389602.4,ENST00000536352.1	chr11	61547693:61547762:61548183:61548264:61548431:61548517,	61548184	61548264	61548227	61548227	Frame_Shift_Del	C	-	p.P817fs
LIHC	TCGA-DD-A3A0-01	FADS2	ENST00000517312.1	chr11	61595650:61595696:61595966:61596069:61605249:61605360,	61595967	61596069	61596024	61596024	Frame_Shift_Del	G	-	p.P54fs
LIHC	TCGA-DD-A3A0-01	FADS3	ENST00000540820.1,ENST00000278829.2,ENST00000527697.1,ENST00000526294.1,ENST00000534223.1,ENST00000527379.1,ENST00000525588.1,ENST00000531956.1,ENST00000529404.1	chr11	61644982:61645059:61645626:61645687:61645983:61646054,	61645627	61645687	61645642	61645642	Frame_Shift_Del	G	-	p.L265fs
LIHC	TCGA-DD-A3A0-01	FADS3	ENST00000414624.2,ENST00000533676.1,ENST00000540820.1,ENST00000278829.2,ENST00000527697.1,ENST00000534223.1,ENST00000534426.1,ENST00000531956.1,ENST00000529404.1	chr11	61646217:61646319:61646783:61646981:61647512:61647623,	61646784	61646981	61646887	61646887	Frame_Shift_Del	C	-	p.G140fs
LIHC	TCGA-DD-A3A0-01	FADS3	ENST00000525588.1	chr11	61646217:61646319:61646867:61646981:61647512:61647623,	61646868	61646981	61646887	61646887	Frame_Shift_Del	C	-	p.G140fs
LIHC	TCGA-DD-A3A0-01	RAB3IL1	ENST00000394836.2,ENST00000301773.5	chr11	61666785:61666852:61669913:61670013:61672017:61672130,	61669914	61670013	61669949	61669949	Frame_Shift_Del	T	-	p.S322fs
LIHC	TCGA-DD-A3A0-01	INCENP	ENST00000528037.1,ENST00000394818.3,ENST00000278849.4	chr11	61896241:61896355:61897253:61898062:61905303:61905355,	61897254	61898062	61897925	61897925	Frame_Shift_Del	C	-	p.A309fs
LIHC	TCGA-DD-A3A0-01	MTA2	ENST00000524902.1,ENST00000278823.2,ENST00000527204.1	chr11	62363929:62364004:62364108:62364297:62364787:62364885,	62364109	62364297	62364153	62364153	Frame_Shift_Del	G	-	p.L280fs
LIHC	TCGA-DD-A3A0-01	EML3	ENST00000531557.1,ENST00000533165.1,ENST00000494176.2,ENST00000278845.4,ENST00000529309.1,ENST00000394773.2,ENST00000494448.1,ENST00000394776.4	chr11	62371415:62371513:62371584:62371673:62372584:62372652,	62371585	62371673	62371662	62371662	Frame_Shift_Del	A	-	p.L665fs
LIHC	TCGA-DD-A3A0-01	GANAB	ENST00000534613.1,ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000526732.1,ENST00000540933.1	chr11	62400528:62400573:62400655:62400743:62400916:62400986,	62400656	62400743	62400726	62400726	Frame_Shift_Del	C	-	p.G238fs
LIHC	TCGA-DD-A3A0-01	POLR2G	ENST00000301788.7,ENST00000527435.1,ENST00000533442.1	chr11	62529266:62529376:62530338:62530498:62532653:62532704,	62530339	62530498	62530460	62530460	Frame_Shift_Del	G	-	p.G82fs
LIHC	TCGA-DD-A3A0-01	TAF6L	ENST00000524976.1,ENST00000294168.3	chr11	62546393:62546435:62549365:62549440:62549584:62549805,	62549366	62549440	62549414	62549414	Frame_Shift_Del	C	-	p.P194fs
LIHC	TCGA-DD-A3A0-01	TMEM179B	ENST00000333449.4	chr11	62556801:62556898:62557072:62557151:62557357:62557582,	62557073	62557151	62557104	62557104	Frame_Shift_Del	C	-	p.P152fs
LIHC	TCGA-DD-A3A0-01	NXF1	ENST00000294172.2,ENST00000530875.1,ENST00000531709.2,ENST00000533671.1,ENST00000532297.1,ENST00000439713.2	chr11	62569648:62569732:62570890:62571044:62571263:62571450,	62570891	62571044	62571038	62571038	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A3A0-01	SLC22A8	ENST00000535878.1,ENST00000545207.1,ENST00000336232.2,ENST00000430500.2	chr11	62760708:62760808:62760895:62761099:62761241:62761350,	62760896	62761099	62760968	62760968	Frame_Shift_Del	C	-	p.G486fs
LIHC	TCGA-DD-A3A0-01	SLC22A10	ENST00000332793.6	chr11	63066985:63067101:63069800:63070015:63071579:63071688,	63069801	63070015	63070009	63070009	Frame_Shift_Del	C	-	p.P427fs
LIHC	TCGA-DD-A3A0-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072237	63072237	Frame_Shift_Del	T	-	p.F493fs
LIHC	TCGA-DD-A3A0-01	SLC22A9	ENST00000279178.3,ENST00000536333.1,ENST00000310969.4	chr11	63143116:63143240:63149630:63149749:63173968:63174183,	63149631	63149749	63149721	63149721	Frame_Shift_Del	A	-	p.K349fs
LIHC	TCGA-DD-A3A0-01	SLC22A9	ENST00000536333.1	chr11	63149630:63149749:63173968:63174183:63175583:63175692,63149630:63149749:63173968:63174183:63177273:63177430,	63173969	63174183	63174091	63174091	Frame_Shift_Del	G	-	p.W399fs
LIHC	TCGA-DD-A3A0-01	SLC22A9	ENST00000279178.3,ENST00000310969.4	chr11	63174044:63174183:63175583:63175692:63176147:63176351,	63175584	63175692	63175605	63175605	Frame_Shift_Del	T	-	p.V437fs
LIHC	TCGA-DD-A3A0-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63486693	63486693	Frame_Shift_Del	A	-	p.E240fs
LIHC	TCGA-DD-A3A0-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63486693	63486693	Frame_Shift_Del	A	-	p.E240fs
LIHC	TCGA-DD-A3A0-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63486787	63486787	Frame_Shift_Del	T	-	p.D271fs
LIHC	TCGA-DD-A3A0-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63486787	63486787	Frame_Shift_Del	T	-	p.D271fs
LIHC	TCGA-DD-A3A0-01	MARK2	ENST00000361128.5,ENST00000413835.2,ENST00000513765.2,ENST00000377809.4,ENST00000402010.2,ENST00000315032.8	chr11	63669669:63669802:63670072:63670254:63670532:63670604,	63670073	63670254	63670238	63670238	Frame_Shift_Del	C	-	p.T467fs
LIHC	TCGA-DD-A3A0-01	MARK2	ENST00000377810.3,ENST00000408948.3,ENST00000350490.7,ENST00000502399.3,ENST00000425897.2,ENST00000508192.1,ENST00000509502.2	chr11	63669669:63669802:63670075:63670254:63670532:63670604,	63670076	63670254	63670238	63670238	Frame_Shift_Del	C	-	p.T467fs
LIHC	TCGA-DD-A3A0-01	MARK2	ENST00000361128.5,ENST00000413835.2,ENST00000377810.3,ENST00000408948.3,ENST00000350490.7,ENST00000508192.1	chr11	63670158:63670254:63670532:63670630:63671457:63671619,63670158:63670254:63670532:63670630:63672257:63672515,	63670533	63670630	63670573	63670573	Frame_Shift_Del	C	-	p.S486fs
LIHC	TCGA-DD-A3A0-01	RCOR2	ENST00000301459.4	chr11	63680147:63680205:63680341:63680419:63681425:63681641,	63680342	63680419	63680370	63680370	Frame_Shift_Del	C	-	p.G315fs
LIHC	TCGA-DD-A3A0-01	OTUB1	ENST00000535715.1	chr11	63764542:63764716:63764820:63764898:63765158:63765240,	63764821	63764898	63764864	63764864	Frame_Shift_Del	T	-	p.I120fs
LIHC	TCGA-DD-A3A0-01	MACROD1	ENST00000543422.1,ENST00000255681.6	chr11	63766854:63766876:63767001:63767032:63767113:63767235,	63767002	63767032	63767024	63767024	Frame_Shift_Del	G	-	p.P265fs
LIHC	TCGA-DD-A3A0-01	MACROD1	ENST00000543422.1,ENST00000255681.6	chr11	63767113:63767235:63767698:63767815:63782723:63782753,	63767699	63767815	63767737	63767737	Frame_Shift_Del	T	-	p.K209fs
LIHC	TCGA-DD-A3A0-01	STIP1	ENST00000305218.4,ENST00000543847.1,ENST00000358794.5,ENST00000540501.1	chr11	63960549:63960759:63961660:63961802:63961950:63962092,	63961661	63961802	63961672	63961672	Frame_Shift_Del	A	-	p.R124fs
LIHC	TCGA-DD-A3A0-01	TRPT1	ENST00000317459.6,ENST00000541278.1,ENST00000394546.2,ENST00000546089.1,ENST00000545812.1	chr11	63992272:63992442:63992970:63993052:63993257:63993341,	63992971	63993052	63992987	63992987	Frame_Shift_Del	C	-	p.G47fs
LIHC	TCGA-DD-A3A0-01	TRPT1	ENST00000539595.1,ENST00000536234.1,ENST00000539436.1	chr11	63992125:63992189:63992272:63993052:63993257:63993341,	63992273	63993052	63992987	63992987	Frame_Shift_Del	C	-	p.G47fs
LIHC	TCGA-DD-A3A0-01	PLCB3	ENST00000279230.6,ENST00000540288.1	chr11	64022219:64022288:64022369:64022510:64022705:64022785,	64022370	64022510	64022383	64022383	Frame_Shift_Del	G	-	p.R87fs
LIHC	TCGA-DD-A3A0-01	PLCB3	ENST00000279230.6,ENST00000325234.5,ENST00000540288.1	chr11	64030147:64030280:64030969:64031069:64031162:64031267,	64030970	64031069	64031033	64031033	Frame_Shift_Del	G	-	p.G807fs
LIHC	TCGA-DD-A3A0-01	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64111827	64111827	Frame_Shift_Del	C	-	p.A605fs
LIHC	TCGA-DD-A3A0-01	RPS6KA4	ENST00000334205.4,ENST00000530504.1,ENST00000531659.1,ENST00000294261.4	chr11	64126755:64126762:64126849:64126921:64127634:64127853,	64126850	64126921	64126917	64126917	Frame_Shift_Del	G	-	p.T41fs
LIHC	TCGA-DD-A3A0-01	RPS6KA4	ENST00000528057.1,ENST00000334205.4,ENST00000528355.1,ENST00000530504.1,ENST00000294261.4	chr11	64127634:64127853:64127948:64128064:64128605:64128713,	64127949	64128064	64127963	64127963	Frame_Shift_Del	G	-	p.G121fs
LIHC	TCGA-DD-A3A0-01	SLC22A11	ENST00000377581.3,ENST00000301891.4	chr11	64332693:64332809:64335070:64335285:64336141:64336250,	64335071	64335285	64335156	64335156	Frame_Shift_Del	G	-	p.G382fs
LIHC	TCGA-DD-A3A0-01	SLC22A12	ENST00000473690.1,ENST00000336464.7,ENST00000377574.1	chr11	64361106:64361275:64365987:64366111:64366279:64366395,	64365988	64366111	64366104	64366104	Frame_Shift_Del	C	-	p.T316fs
LIHC	TCGA-DD-A3A0-01	NRXN2	ENST00000423049.1,ENST00000487484.1,ENST00000301894.2	chr11	64397957:64398045:64402742:64402924:64410010:64410072,	64402743	64402924	64402872	64402872	Frame_Shift_Del	C	-	p.W1152fs
LIHC	TCGA-DD-A3A0-01	NRXN2	ENST00000423049.1,ENST00000487484.1,ENST00000301894.2	chr11	64397957:64398045:64402742:64402924:64410010:64410072,	64402743	64402924	64402894	64402894	Frame_Shift_Del	C	-	p.G1145fs
LIHC	TCGA-DD-A3A0-01	SF1	ENST00000334944.5,ENST00000486867.1,ENST00000433274.2,ENST00000413725.1,ENST00000377390.3	chr11	64532761:64532990:64534371:64534551:64534663:64534718,64533511:64533627:64534371:64534551:64534663:64534718,	64534372	64534551	64534485	64534485	Frame_Shift_Del	G	-	p.P493fs
LIHC	TCGA-DD-A3A0-01	SF1	ENST00000334944.5,ENST00000413951.1,ENST00000227503.9,ENST00000432725.1,ENST00000433274.2,ENST00000377387.1,ENST00000377394.3,ENST00000377390.3	chr11	64537851:64537880:64540901:64540977:64543969:64544098,	64540902	64540977	64540917	64540917	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A3A0-01	CDC42BPG	ENST00000342711.5	chr11	64608024:64608120:64609121:64609205:64609284:64609356,	64609122	64609205	64609157	64609157	Frame_Shift_Del	T	-	p.M101fs
LIHC	TCGA-DD-A3A0-01	ATG2A	ENST00000421419.2,ENST00000418259.1,ENST00000377264.3	chr11	64665557:64665642:64665732:64665834:64666107:64666314,	64665733	64665834	64665805	64665805	Frame_Shift_Del	G	-	p.P1569fs
LIHC	TCGA-DD-A3A0-01	ATG2A	ENST00000421419.2,ENST00000418259.1,ENST00000377264.3	chr11	64667965:64668101:64668355:64668564:64669433:64669600,	64668356	64668564	64668369	64668369	Frame_Shift_Del	G	-	p.H1441fs
LIHC	TCGA-DD-A3A0-01	NAALADL1	ENST00000340252.4,ENST00000530139.1,ENST00000528977.1,ENST00000358658.3,ENST00000356632.3,ENST00000355721.3	chr11	64813731:64813834:64813916:64813998:64815118:64815204,64813731:64813834:64813916:64813998:64814946:64815037,	64813917	64813998	64813925	64813925	Frame_Shift_Del	A	-	p.L558fs
LIHC	TCGA-DD-A3A0-01	NAALADL1	ENST00000529685.1	chr11	64813528:64813586:64813660:64813998:64814946:64815037,	64813661	64813998	64813925	64813925	Frame_Shift_Del	A	-	p.L558fs
LIHC	TCGA-DD-A3A0-01	NAALADL1	ENST00000340252.4,ENST00000355369.2,ENST00000529274.1,ENST00000528977.1,ENST00000358658.3,ENST00000356632.3,ENST00000355721.3,ENST00000339885.2	chr11	64815623:64815687:64815771:64815857:64820689:64820809,	64815772	64815857	64815813	64815813	Frame_Shift_Del	C	-	p.A415fs
LIHC	TCGA-DD-A3A0-01	VPS51	ENST00000527646.1,ENST00000279281.3	chr11	64875274:64875494:64875668:64876386:64876751:64876967,	64875669	64876386	64875826	64875826	Frame_Shift_Del	C	-	p.P296fs
LIHC	TCGA-DD-A3A0-01	VPS51	ENST00000527646.1,ENST00000526856.1,ENST00000279281.3	chr11	64876815:64876967:64877176:64877395:64877953:64878075,	64877177	64877395	64877185	64877185	Frame_Shift_Del	C	-	p.F556fs
LIHC	TCGA-DD-A3A0-01	TM7SF2	ENST00000534371.1,ENST00000532328.1,ENST00000345348.5,ENST00000525385.1,ENST00000533766.1,ENST00000524690.1,ENST00000530650.1,ENST00000279263.7,ENST00000540748.1,ENST00000524986.1,ENST00000529601.1,ENST00000529233.1	chr11	64880282:64880337:64880962:64881066:64882184:64882280,64880842:64880886:64880962:64881066:64882184:64882237,	64880963	64881066	64880980	64880980	Frame_Shift_Del	T	-	p.F174fs
LIHC	TCGA-DD-A3A0-01	CAPN1	ENST00000533129.1,ENST00000524773.1,ENST00000527323.1,ENST00000526468.1,ENST00000533820.1,ENST00000279247.6	chr11	64953387:64953521:64953640:64953809:64954685:64954765,	64953641	64953809	64953669	64953669	Frame_Shift_Del	G	-	p.G208fs
LIHC	TCGA-DD-A3A0-01	POLA2	ENST00000527850.1,ENST00000532469.1,ENST00000265465.3,ENST00000541089.1	chr11	65043362:65043469:65046200:65046394:65047008:65047097,	65046201	65046394	65046241	65046241	Frame_Shift_Del	G	-	p.G168fs
LIHC	TCGA-DD-A3A0-01	DPF2	ENST00000530993.1,ENST00000528416.1,ENST00000532264.1,ENST00000252268.4	chr11	65108436:65108544:65108869:65109033:65111215:65111308,	65108870	65109033	65108946	65108946	Frame_Shift_Del	C	-	p.D126fs
LIHC	TCGA-DD-A3A0-01	SCYL1	ENST00000279270.6,ENST00000524944.1,ENST00000533862.1,ENST00000270176.5,ENST00000420247.2,ENST00000525364.1,ENST00000527009.1	chr11	65293395:65293514:65293594:65293821:65294253:65294344,	65293595	65293821	65293774	65293774	Frame_Shift_Del	C	-	p.D185fs
LIHC	TCGA-DD-A3A0-01	LTBP3	ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000526825.1,ENST00000530426.1	chr11	65320634:65320727:65320895:65321001:65321171:65321198,	65320896	65321001	65320931	65320931	Frame_Shift_Del	C	-	p.G312fs
LIHC	TCGA-DD-A3A0-01	SIPA1	ENST00000394224.3,ENST00000534313.1,ENST00000394227.3,ENST00000527525.1	chr11	65414854:65415129:65416732:65416951:65417031:65417143,	65416733	65416951	65416822	65416822	Frame_Shift_Del	C	-	p.T799fs
LIHC	TCGA-DD-A3A0-01	RELA	ENST00000525658.1,ENST00000529389.1,ENST00000406246.3,ENST00000533546.1,ENST00000532999.1,ENST00000531484.1,ENST00000308639.9,ENST00000525693.1	chr11	65425900:65425970:65426188:65426293:65427136:65427214,	65426189	65426293	65426225	65426225	Frame_Shift_Del	C	-	p.D210fs
LIHC	TCGA-DD-A3A0-01	RELA	ENST00000529389.1	chr11	65427659:65427686:65429157:65429306:65429407:65429559,65427136:65427268:65429157:65429306:65429407:65429559,	65429158	65429306	65429231	65429231	Frame_Shift_Del	G	-	p.H88fs
LIHC	TCGA-DD-A3A0-01	RELA	ENST00000531238.1	chr11	65427659:65427686:65429157:65429290:65429407:65429559,	65429158	65429290	65429231	65429231	Frame_Shift_Del	G	-	p.H88fs
LIHC	TCGA-DD-A3A0-01	RNASEH2C	ENST00000531596.1,ENST00000533698.1,ENST00000528220.1,ENST00000308418.4	chr11	65487151:65487280:65487515:65487635:65487712:65487888,	65487516	65487635	65487586	65487586	Frame_Shift_Del	C	-	p.G133fs
LIHC	TCGA-DD-A3A0-01	EFEMP2	ENST00000532084.1,ENST00000526628.1,ENST00000531005.1,ENST00000531972.1,ENST00000307998.6,ENST00000528176.1	chr11	65635360:65635527:65635765:65635892:65635980:65636007,	65635766	65635892	65635823	65635823	Frame_Shift_Del	C	-	p.G306fs
LIHC	TCGA-DD-A3A0-01	CTSW	ENST00000526034.1,ENST00000528419.1	chr11	65647328:65647412:65647672:65647757:65648877:65648991,	65647673	65647757	65647744	65647744	Frame_Shift_Del	C	-	p.Y53fs
LIHC	TCGA-DD-A3A0-01	EIF1AD	ENST00000533544.1	chr11	65767569:65767632:65767773:65767976:65769510:65769627,65767569:65767632:65767773:65767976:65769380:65769607,	65767774	65767976	65767798	65767798	Frame_Shift_Del	G	-	p.P21fs
LIHC	TCGA-DD-A3A0-01	EIF1AD	ENST00000532707.1	chr11	65767569:65767632:65767773:65767877:65769510:65769627,65767569:65767632:65767773:65767877:65769380:65769607,	65767774	65767877	65767798	65767798	Frame_Shift_Del	G	-	p.P21fs
LIHC	TCGA-DD-A3A0-01	EIF1AD	ENST00000312234.2	chr11	65767569:65767632:65767773:65767947:65769380:65769607,	65767774	65767947	65767798	65767798	Frame_Shift_Del	G	-	p.P21fs
LIHC	TCGA-DD-A3A0-01	EIF1AD	ENST00000527249.1	chr11	65767569:65767632:65767773:65767952:65769510:65769627,65767569:65767632:65767773:65767952:65769380:65769607,	65767774	65767952	65767798	65767798	Frame_Shift_Del	G	-	p.P21fs
LIHC	TCGA-DD-A3A0-01	SF3B2	ENST00000524627.1,ENST00000322535.6	chr11	65823008:65823056:65824308:65824426:65824736:65824846,	65824309	65824426	65824375	65824375	Frame_Shift_Del	C	-	p.P190fs
LIHC	TCGA-DD-A3A0-01	SF3B2	ENST00000530981.1,ENST00000528302.1,ENST00000322535.6	chr11	65829156:65829246:65829361:65829469:65830479:65830587,	65829362	65829469	65829416	65829416	Frame_Shift_Del	C	-	p.P626fs
LIHC	TCGA-DD-A3A0-01	SLC29A2	ENST00000540386.1	chr11	66133596:66133702:66133901:66134035:66134934:66135016,66133596:66133662:66133901:66134035:66134934:66135016,	66133902	66134035	66133943	66133943	Frame_Shift_Del	G	-	p.Q276fs
LIHC	TCGA-DD-A3A0-01	SLC29A2	ENST00000540386.1	chr11	66133596:66133702:66133901:66134035:66134934:66135016,66133596:66133662:66133901:66134035:66134934:66135016,	66133902	66134035	66134009	66134009	Frame_Shift_Del	G	-	p.Q254fs
LIHC	TCGA-DD-A3A0-01	SLC29A2	ENST00000357440.2,ENST00000544554.1,ENST00000311161.7,ENST00000540386.1,ENST00000541567.1,ENST00000546034.1	chr11	66135242:66135340:66136007:66136142:66136530:66136602,	66136008	66136142	66136032	66136032	Frame_Shift_Del	G	-	p.L176fs
LIHC	TCGA-DD-A3A0-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366937	66366937	Frame_Shift_Del	G	-	p.L86fs
LIHC	TCGA-DD-A3A0-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366958	66366958	Frame_Shift_Del	G	-	p.L93fs
LIHC	TCGA-DD-A3A0-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366979	66366979	Frame_Shift_Del	G	-	p.Q100fs
LIHC	TCGA-DD-A3A0-01	CCS	ENST00000530384.1,ENST00000310190.4,ENST00000533244.1	chr11	66366929:66367107:66367959:66368020:66372809:66372887,	66367960	66368020	66368002	66368002	Frame_Shift_Del	C	-	p.G157fs
LIHC	TCGA-DD-A3A0-01	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66454464:66454638:66454897:66455118:66455338:66455389,	66454898	66455118	66454998	66454998	Frame_Shift_Del	G	-	p.L2208fs
LIHC	TCGA-DD-A3A0-01	RCE1	ENST00000524506.1,ENST00000309657.3	chr11	66611254:66611332:66611426:66611510:66611756:66611835,	66611427	66611510	66611473	66611473	Frame_Shift_Del	T	-	p.I112fs
LIHC	TCGA-DD-A3A0-01	RCE1	ENST00000524849.1,ENST00000532775.1,ENST00000525356.1,ENST00000534645.1	chr11	66611254:66611332:66611430:66611510:66611756:66611835,	66611431	66611510	66611473	66611473	Frame_Shift_Del	T	-	p.I112fs
LIHC	TCGA-DD-A3A0-01	SYT12	ENST00000525149.1	chr11	66797592:66797649:66802115:66802309:66807281:66807347,66797905:66798030:66802115:66802309:66807281:66807347,	66802116	66802309	66802225	66802225	Frame_Shift_Del	C	-	p.F48fs
LIHC	TCGA-DD-A3A0-01	KDM2A	ENST00000529006.2,ENST00000398645.2	chr11	66982810:66982917:66983326:66983420:66985226:66985355,66982810:66982917:66983326:66983420:66985201:66985355,	66983327	66983420	66983412	66983412	Frame_Shift_Del	G	-	p.G228fs
LIHC	TCGA-DD-A3A0-01	SSH3	ENST00000532881.1,ENST00000376757.5,ENST00000308127.4	chr11	67075882:67075929:67076867:67077014:67077238:67077439,	67076868	67077014	67076963	67076963	Frame_Shift_Del	C	-	p.A386fs
LIHC	TCGA-DD-A3A0-01	POLD4	ENST00000312419.3,ENST00000530584.1,ENST00000532830.1,ENST00000531239.1,ENST00000529704.1	chr11	67119457:67119490:67120161:67120273:67120458:67120548,	67120162	67120273	67120231	67120231	Frame_Shift_Del	C	-	p.G77fs
LIHC	TCGA-DD-A3A0-01	TBC1D10C	ENST00000312390.5	chr11	67171411:67171428:67171661:67171825:67172555:67172655,	67171662	67171825	67171707	67171707	Frame_Shift_Del	C	-	p.P13fs
LIHC	TCGA-DD-A3A0-01	RPS6KB2	ENST00000528964.1,ENST00000312629.5,ENST00000525996.3	chr11	67201850:67201955:67202052:67202165:67202459:67202489,	67202053	67202165	67202148	67202148	Frame_Shift_Del	C	-	p.S417fs
LIHC	TCGA-DD-A3A0-01	CORO1B	ENST00000393893.1,ENST00000341356.5	chr11	67207701:67207734:67207805:67207910:67208595:67208715,	67207806	67207910	67207859	67207859	Frame_Shift_Del	C	-	p.A270fs
LIHC	TCGA-DD-A3A0-01	ACY3	ENST00000255082.3	chr11	67413162:67413358:67414278:67414534:67414986:67415054,	67414279	67414534	67414401	67414401	Frame_Shift_Del	G	-	p.P38fs
LIHC	TCGA-DD-A3A0-01	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67816345:67816464:67816547:67816761:67817129:67817255,	67816548	67816761	67816731	67816731	Frame_Shift_Del	C	-	p.S619fs
LIHC	TCGA-DD-A3A0-01	CHKA	ENST00000525155.1,ENST00000356135.5,ENST00000265689.4	chr11	67829419:67829501:67831991:67832098:67833252:67833361,	67831992	67832098	67832030	67832030	Frame_Shift_Del	T	-	p.K398fs
LIHC	TCGA-DD-A3A0-01	LRP5	ENST00000529993.1	chr11	68080151:68080273:68115314:68115711:68125117:68125315,	68115315	68115711	68115508	68115508	Frame_Shift_Del	G	-	p.T95fs
LIHC	TCGA-DD-A3A0-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68197045:68197168:68201069:68201306:68204356:68204462,	68201070	68201306	68201085	68201085	Frame_Shift_Del	C	-	p.S1260fs
LIHC	TCGA-DD-A3A0-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68201069:68201306:68204356:68204467:68205913:68206076,	68204357	68204467	68204430	68204430	Frame_Shift_Del	C	-	p.F1358fs
LIHC	TCGA-DD-A3A0-01	CPT1A	ENST00000540367.1,ENST00000376618.2,ENST00000539743.1,ENST00000265641.5	chr11	68571467:68571569:68574934:68575106:68579904:68580044,	68574935	68575106	68575058	68575058	Frame_Shift_Del	A	-	p.F110fs
LIHC	TCGA-DD-A3A0-01	TPCN2	ENST00000442692.2	chr11	68838823:68838888:68839390:68839491:68845949:68846069,	68839391	68839491	68839426	68839426	Frame_Shift_Del	G	-	p.L332fs
LIHC	TCGA-DD-A3A0-01	PPFIA1	ENST00000389547.3,ENST00000530294.1,ENST00000253925.7	chr11	70189856:70189998:70194294:70194526:70200406:70200558,	70194295	70194526	70194309	70194309	Frame_Shift_Del	A	-	p.E649fs
LIHC	TCGA-DD-A3A0-01	CTTN	ENST00000301843.8	chr11	70265851:70265962:70266505:70266616:70269045:70269101,70265851:70265962:70266505:70266616:70267575:70267642,	70266506	70266616	70266611	70266611	Frame_Shift_Del	A	-	p.Q262fs
LIHC	TCGA-DD-A3A0-01	CTTN	ENST00000533931.1	chr11	70279228:70279384:70279730:70279824:70281131:70281225,	70279731	70279824	70279804	70279804	Frame_Shift_Del	C	-	p.A462fs
LIHC	TCGA-DD-A3A0-01	CTTN	ENST00000376561.3,ENST00000301843.8,ENST00000529736.1,ENST00000538675.1,ENST00000393747.2,ENST00000346329.3	chr11	70279228:70279384:70279752:70279824:70281131:70281225,	70279753	70279824	70279804	70279804	Frame_Shift_Del	C	-	p.A462fs
LIHC	TCGA-DD-A3A0-01	IL18BP	ENST00000531053.1,ENST00000393703.4,ENST00000534583.1,ENST00000497194.2,ENST00000404792.1,ENST00000260049.5,ENST00000393705.4,ENST00000343898.5,ENST00000337131.5	chr11	71710972:71711058:71711396:71711603:71712246:71712370,	71711397	71711603	71711430	71711430	Frame_Shift_Del	C	-	p.A21fs
LIHC	TCGA-DD-A3A0-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71725170	71725170	Frame_Shift_Del	C	-	p.A1127fs
LIHC	TCGA-DD-A3A0-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726244	71726244	Frame_Shift_Del	C	-	p.A769fs
LIHC	TCGA-DD-A3A0-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726491	71726491	Frame_Shift_Del	T	-	p.K686fs
LIHC	TCGA-DD-A3A0-01	PDE2A	ENST00000541998.1,ENST00000536308.1,ENST00000543575.1	chr11	72302392:72302400:72316181:72316270:72319705:72319795,	72316182	72316270	72316212	72316212	Frame_Shift_Del	G	-	p.P98fs
LIHC	TCGA-DD-A3A0-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000495878.1,ENST00000393605.3,ENST00000544721.1,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72396688:72396726:72397086:72397236:72398483:72398547,	72397087	72397236	72397149	72397149	Frame_Shift_Del	G	-	p.L1414fs
LIHC	TCGA-DD-A3A0-01	ARAP1	ENST00000542596.1	chr11	72396688:72396726:72397139:72397236:72398483:72398547,	72397140	72397236	72397149	72397149	Frame_Shift_Del	G	-	p.L1414fs
LIHC	TCGA-DD-A3A0-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000495878.1,ENST00000393605.3,ENST00000544721.1,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72396688:72396726:72397086:72397236:72398483:72398547,	72397087	72397236	72397216	72397216	Frame_Shift_Del	G	-	p.P1391fs
LIHC	TCGA-DD-A3A0-01	ARAP1	ENST00000542596.1	chr11	72396688:72396726:72397139:72397236:72398483:72398547,	72397140	72397236	72397216	72397216	Frame_Shift_Del	G	-	p.P1391fs
LIHC	TCGA-DD-A3A0-01	ARAP1	ENST00000452383.2,ENST00000359373.5,ENST00000455638.2,ENST00000495878.1,ENST00000393605.3,ENST00000334211.8,ENST00000427971.2,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72408642:72408694:72408955:72409151:72410049:72410152,	72408956	72409151	72409006	72409006	Frame_Shift_Del	G	-	p.P896fs
LIHC	TCGA-DD-A3A0-01	ATG16L2	ENST00000536995.1	chr11	72537217:72537288:72537562:72538338:72539403:72539523,	72537563	72538338	72537616	72537616	Frame_Shift_Del	G	-	p.V409fs
LIHC	TCGA-DD-A3A0-01	ATG16L2	ENST00000544490.1,ENST00000439504.2,ENST00000535830.1,ENST00000541367.1,ENST00000538973.1,ENST00000321297.5,ENST00000542481.1,ENST00000540222.1,ENST00000435507.2	chr11	72537217:72537288:72537562:72537634:72537747:72537779,	72537563	72537634	72537616	72537616	Frame_Shift_Del	G	-	p.V409fs
LIHC	TCGA-DD-A3A0-01	RELT	ENST00000393580.2,ENST00000064780.2	chr11	73102188:73102268:73103255:73103513:73104881:73104962,	73103256	73103513	73103494	73103494	Frame_Shift_Del	C	-	p.G202fs
LIHC	TCGA-DD-A3A0-01	RELT	ENST00000393580.2,ENST00000539134.1,ENST00000064780.2	chr11	73105521:73105779:73106131:73106330:73106488:73107685,	73106132	73106330	73106249	73106249	Frame_Shift_Del	C	-	p.L388fs
LIHC	TCGA-DD-A3A0-01	FAM168A	ENST00000356467.4,ENST00000064778.4	chr11	73120531:73120706:73122438:73122581:73130918:73131044,	73122439	73122581	73122568	73122568	Frame_Shift_Del	C	-	p.G106fs
LIHC	TCGA-DD-A3A0-01	PLEKHB1	ENST00000543085.1	chr11	73357623:73357671:73360056:73360132:73361597:73361750,73358733:73358783:73360056:73360132:73361597:73361750,73358733:73358783:73360056:73360132:73362832:73362896,	73360057	73360132	73360086	73360086	Frame_Shift_Del	T	-	p.P16fs
LIHC	TCGA-DD-A3A0-01	PAAF1	ENST00000540659.1	chr11	73611412:73611465:73620443:73620638:73625457:73625492,73611412:73611465:73620443:73620638:73627589:73627661,	73620444	73620638	73620621	73620621	Frame_Shift_Del	C	-	p.S238fs
LIHC	TCGA-DD-A3A0-01	C2CD3	ENST00000542484.1	chr11	73765651:73765716:73768450:73768589:73785297:73785645,73765651:73765716:73768450:73768589:73781550:73781914,	73768451	73768589	73768477	73768477	Frame_Shift_Del	G	-	p.P1688fs
LIHC	TCGA-DD-A3A0-01	C2CD3	ENST00000313663.7,ENST00000442398.2,ENST00000334126.7,ENST00000414160.2	chr11	73785297:73785645:73789159:73789762:73795925:73796015,	73789160	73789762	73789735	73789735	Frame_Shift_Del	A	-	p.L1343fs
LIHC	TCGA-DD-A3A0-01	PPME1	ENST00000398427.4	chr11	73950177:73950301:73957078:73957250:73958123:73958168,	73957079	73957250	73957162	73957162	Frame_Shift_Del	A	-	p.A292fs
LIHC	TCGA-DD-A3A0-01	PPME1	ENST00000538501.1,ENST00000535205.1,ENST00000328257.8,ENST00000543525.1,ENST00000541340.1	chr11	73950177:73950301:73957120:73957250:73958123:73958168,	73957121	73957250	73957162	73957162	Frame_Shift_Del	A	-	p.A292fs
LIHC	TCGA-DD-A3A0-01	POLD3	ENST00000263681.2,ENST00000528481.1,ENST00000527458.1,ENST00000530511.1	chr11	74305105:74305161:74315736:74315839:74322543:74322583,	74315737	74315839	74315772	74315772	Frame_Shift_Del	A	-	p.E51fs
LIHC	TCGA-DD-A3A0-01	CHRDL2	ENST00000263671.5,ENST00000528789.1,ENST00000376332.3,ENST00000534159.1	chr11	74424430:74424524:74429764:74429877:74441851:74442198,	74429765	74429877	74429834	74429834	Frame_Shift_Del	G	-	p.P42fs
LIHC	TCGA-DD-A3A0-01	XRRA1	ENST00000531449.1,ENST00000321448.8,ENST00000340360.6	chr11	74554394:74554498:74554898:74555004:74555212:74555328,	74554899	74555004	74554979	74554979	Frame_Shift_Del	G	-	p.P682fs
LIHC	TCGA-DD-A3A0-01	RPS3	ENST00000526248.1	chr11	75113395:75113490:75115097:75115251:75115715:75115731,	75115098	75115251	75115101	75115101	Frame_Shift_Del	G	-	p.G130fs
LIHC	TCGA-DD-A3A0-01	RPS3	ENST00000278572.6,ENST00000531188.1,ENST00000422465.2,ENST00000529173.1,ENST00000524851.1,ENST00000530721.1,ENST00000527446.1,ENST00000526608.1	chr11	75112683:75112777:75115063:75115251:75115715:75115732,75113471:75113490:75115063:75115251:75115715:75115774,	75115064	75115251	75115101	75115101	Frame_Shift_Del	G	-	p.G130fs
LIHC	TCGA-DD-A3A0-01	GDPD5	ENST00000527820.1,ENST00000376282.3,ENST00000336898.3,ENST00000443276.2,ENST00000533784.1,ENST00000533805.1,ENST00000529721.1,ENST00000526177.1	chr11	75147980:75148093:75150923:75151006:75152207:75152355,	75150924	75151006	75151002	75151002	Frame_Shift_Del	G	-	p.P355fs
LIHC	TCGA-DD-A3A0-01	UVRAG	ENST00000356136.3,ENST00000528420.1,ENST00000528264.1	chr11	75590922:75591084:75599872:75599947:75622997:75623083,	75599873	75599947	75599889	75599889	Frame_Shift_Del	A	-	p.Q150fs
LIHC	TCGA-DD-A3A0-01	UVRAG	ENST00000356136.3,ENST00000528420.1,ENST00000533454.1,ENST00000532130.1,ENST00000531818.1,ENST00000539288.1	chr11	75727858:75728024:75776753:75776832:75826967:75827059,	75776754	75776832	75776810	75776810	Frame_Shift_Del	T	-	p.L429fs
LIHC	TCGA-DD-A3A0-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76371919	76371919	Frame_Shift_Del	G	-	p.Q240fs
LIHC	TCGA-DD-A3A0-01	MYO7A	ENST00000409709.3,ENST00000458169.2,ENST00000481328.3,ENST00000458637.2,ENST00000409619.2	chr11	76917141:76917247:76918333:76918447:76919474:76919562,	76918334	76918447	76918433	76918433	Frame_Shift_Del	A	-	p.K1948fs
LIHC	TCGA-DD-A3A0-01	MYO7A	ENST00000605744.1	chr11	76917141:76917247:76918040:76918447:76919474:76919562,	76918041	76918447	76918433	76918433	Frame_Shift_Del	A	-	p.K1948fs
LIHC	TCGA-DD-A3A0-01	MYO7A	ENST00000409709.3,ENST00000458169.2,ENST00000409619.2	chr11	76922196:76922382:76922865:76922982:76923996:76924080,	76922866	76922982	76922966	76922966	Frame_Shift_Del	C	-	p.A2113fs
LIHC	TCGA-DD-A3A0-01	MYO7A	ENST00000458637.2	chr11	76922196:76922382:76922865:76922976:76923996:76924080,	76922866	76922976	76922966	76922966	Frame_Shift_Del	C	-	p.A2113fs
LIHC	TCGA-DD-A3A0-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412024	77412024	Frame_Shift_Del	G	-	p.P750fs
LIHC	TCGA-DD-A3A0-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412696	77412696	Frame_Shift_Del	T	-	p.K526fs
LIHC	TCGA-DD-A3A0-01	AAMDC	ENST00000393427.2,ENST00000526164.1	chr11	77532200:77532287:77553524:77553674:77580767:77580863,	77553525	77553674	77553633	77553633	Frame_Shift_Del	G	-	p.G32fs
LIHC	TCGA-DD-A3A0-01	GAB2	ENST00000340149.2,ENST00000361507.4	chr11	77938002:77938097:77961202:77961446:77991646:77991947,	77961203	77961446	77961408	77961408	Frame_Shift_Del	G	-	p.R139fs
LIHC	TCGA-DD-A3A0-01	NARS2	ENST00000528850.1,ENST00000281038.5,ENST00000525345.1	chr11	78180292:78180359:78189483:78189521:78189630:78189729,	78189484	78189521	78189496	78189496	Frame_Shift_Del	T	-	p.N317fs
LIHC	TCGA-DD-A3A0-01	TENM4	ENST00000533525.1	chr11	78482036:78482183:78497942:78498128:78516336:78516456,	78497943	78498128	78498079	78498079	Frame_Shift_Del	G	-	p.T743fs
LIHC	TCGA-DD-A3A0-01	PRCP	ENST00000393399.2,ENST00000313010.3,ENST00000531801.1,ENST00000535099.1	chr11	82550372:82550467:82560090:82560260:82560955:82561113,	82560091	82560260	82560229	82560229	Frame_Shift_Del	A	-	p.L261fs
LIHC	TCGA-DD-A3A0-01	ANKRD42	ENST00000533342.1,ENST00000393392.2,ENST00000531895.1,ENST00000260047.6	chr11	82935896:82936097:82938788:82938914:82947445:82947551,	82938789	82938914	82938845	82938845	Frame_Shift_Del	A	-	p.K281fs
LIHC	TCGA-DD-A3A0-01	TMEM126B	ENST00000531477.1	chr11	85342188:85342360:85342730:85342852:85345129:85345220,85339673:85339732:85342730:85342852:85345129:85345220,85340175:85340306:85342730:85342852:85345129:85345220,	85342731	85342852	85342755	85342755	Frame_Shift_Del	C	-	p.H36fs
LIHC	TCGA-DD-A3A0-01	TMEM126B	ENST00000526822.1	chr11	85342730:85342852:85345129:85345323:85346710:85346804,85339673:85339732:85345129:85345323:85346710:85346804,	85345130	85345323	85345269	85345269	Frame_Shift_Del	T	-	p.F115fs
LIHC	TCGA-DD-A3A0-01	SYTL2	ENST00000525423.1,ENST00000525702.1,ENST00000359152.5,ENST00000389958.3,ENST00000389959.4,ENST00000527523.1,ENST00000354566.3,ENST00000528231.1,ENST00000316356.4,ENST00000529581.1,ENST00000524452.1,ENST00000389960.4,ENST00000532995.1,ENST00000530351.1,ENST00000533892.1	chr11	85411557:85411636:85415900:85416071:85418471:85418574,	85415901	85416071	85416057	85416057	Frame_Shift_Del	T	-	p.K1552fs
LIHC	TCGA-DD-A3A0-01	PICALM	ENST00000356360.5,ENST00000532603.1	chr11	85670079:85670103:85685750:85685855:85687665:85687725,85670079:85670103:85685750:85685855:85692171:85692271,	85685751	85685855	85685801	85685801	Frame_Shift_Del	G	-	p.Q625fs
LIHC	TCGA-DD-A3A0-01	PICALM	ENST00000532041.1	chr11	85737333:85737409:85742510:85742653:85779692:85779775,85733420:85733512:85742510:85742653:85779692:85779775,	85742511	85742653	85742592	85742592	Frame_Shift_Del	A	-	p.F64fs
LIHC	TCGA-DD-A3A0-01	EED	ENST00000263360.6,ENST00000327320.4,ENST00000534564.1,ENST00000525244.1	chr11	85977124:85977258:85979497:85979603:85988021:85988180,	85979498	85979603	85979531	85979531	Frame_Shift_Del	T	-	p.D298fs
LIHC	TCGA-DD-A3A0-01	CCDC81	ENST00000445632.2,ENST00000354755.1	chr11	86118655:86118743:86119168:86119312:86120302:86120407,	86119169	86119312	86119282	86119282	Frame_Shift_Del	A	-	p.L361fs
LIHC	TCGA-DD-A3A0-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87006823:87006865:87013337:87013484:87016977:87017047,	87013338	87013484	87013430	87013430	Frame_Shift_Del	A	-	p.E193fs
LIHC	TCGA-DD-A3A0-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87006823:87006865:87013337:87013484:87016977:87017047,	87013338	87013484	87013479	87013479	Frame_Shift_Del	T	-	p.D209fs
LIHC	TCGA-DD-A3A0-01	CTSC	ENST00000527018.1,ENST00000227266.5	chr11	88033697:88033813:88042330:88042486:88045555:88045722,	88042331	88042486	88042444	88042444	Frame_Shift_Del	T	-	p.K176fs
LIHC	TCGA-DD-A3A0-01	NAALAD2	ENST00000534061.1,ENST00000321955.4	chr11	89909139:89909230:89911020:89911285:89914787:89914869,	89911021	89911285	89911108	89911108	Frame_Shift_Del	A	-	p.K562fs
LIHC	TCGA-DD-A3A0-01	FAT3	ENST00000525166.1,ENST00000298047.6,ENST00000409404.2	chr11	92523108:92523384:92525932:92526143:92531001:92535075,	92525933	92526143	92525951	92525951	Frame_Shift_Del	C	-	p.P1544fs
LIHC	TCGA-DD-A3A0-01	TAF1D	ENST00000526015.1,ENST00000527068.1,ENST00000323981.2	chr11	93467790:93467826:93469306:93469470:93469859:93469907,	93469307	93469470	93469355	93469355	Frame_Shift_Del	T	-	p.N270fs
LIHC	TCGA-DD-A3A0-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471491	93471491	Frame_Shift_Del	A	-	p.F81fs
LIHC	TCGA-DD-A3A0-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471491	93471491	Frame_Shift_Del	A	-	p.F81fs
LIHC	TCGA-DD-A3A0-01	PIWIL4	ENST00000543336.1	chr11	94334960:94335145:94340604:94340805:94349658:94349729,	94340605	94340805	94340653	94340653	Frame_Shift_Del	A	-	p.K564fs
LIHC	TCGA-DD-A3A0-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533351	94533351	Frame_Shift_Del	T	-	p.L332fs
LIHC	TCGA-DD-A3A0-01	CEP57	ENST00000325542.5,ENST00000538658.1,ENST00000541365.1,ENST00000544522.1,ENST00000541150.1,ENST00000325486.5,ENST00000537677.1	chr11	95532400:95532552:95546095:95546275:95546631:95546684,	95546096	95546275	95546168	95546168	Frame_Shift_Del	A	-	p.E92fs
LIHC	TCGA-DD-A3A0-01	CEP57	ENST00000539855.1	chr11	95532400:95532552:95546067:95546275:95546631:95546684,	95546068	95546275	95546168	95546168	Frame_Shift_Del	A	-	p.E92fs
LIHC	TCGA-DD-A3A0-01	CEP57	ENST00000540830.1	chr11	95532395:95532552:95546115:95546275:95546631:95546684,	95546116	95546275	95546168	95546168	Frame_Shift_Del	A	-	p.E92fs
LIHC	TCGA-DD-A3A0-01	CEP57	ENST00000325486.5,ENST00000535224.1	chr11	95551990:95552068:95555034:95555142:95555662:95555740,95551990:95552068:95555034:95555142:95560949:95561065,	95555035	95555142	95555113	95555113	Frame_Shift_Del	A	-	p.K263fs
LIHC	TCGA-DD-A3A0-01	PGR	ENST00000534780.1,ENST00000526300.1,ENST00000263463.5	chr11	100962490:100962607:100996737:100996889:100998164:100999801,	100996738	100996889	100996842	100996842	Frame_Shift_Del	A	-	p.L562fs
LIHC	TCGA-DD-A3A0-01	TRPC6	ENST00000360497.4	chr11	101353679:101353896:101362286:101362469:101374754:101374821,	101362287	101362469	101362370	101362370	Frame_Shift_Del	C	-	p.D349fs
LIHC	TCGA-DD-A3A0-01	BIRC3	ENST00000263464.3	chr11	102188293:102188302:102192567:102196093:102196196:102196296,	102192568	102196093	102195911	102195911	Frame_Shift_Del	A	-	p.E224fs
LIHC	TCGA-DD-A3A0-01	BIRC2	ENST00000532672.1	chr11	102219328:102219495:102220608:102221480:102221574:102221674,	102220609	102221480	102221330	102221330	Frame_Shift_Del	T	-	p.F249fs
LIHC	TCGA-DD-A3A0-01	BIRC2	ENST00000227758.2	chr11	102217999:102218107:102219328:102221480:102221574:102221674,	102219329	102221480	102221330	102221330	Frame_Shift_Del	T	-	p.F249fs
LIHC	TCGA-DD-A3A0-01	BIRC2	ENST00000530675.1	chr11	102217999:102218107:102220731:102221480:102221574:102221674,	102220732	102221480	102221330	102221330	Frame_Shift_Del	T	-	p.F249fs
LIHC	TCGA-DD-A3A0-01	BIRC2	ENST00000527910.1,ENST00000533742.1,ENST00000530675.1,ENST00000532672.1,ENST00000227758.2,ENST00000534130.1	chr11	102234398:102234447:102239036:102239279:102248226:102248328,	102239037	102239279	102239044	102239044	Frame_Shift_Del	T	-	p.H377fs
LIHC	TCGA-DD-A3A0-01	BIRC2	ENST00000527910.1,ENST00000530675.1,ENST00000532672.1,ENST00000227758.2	chr11	102239036:102239279:102248226:102248481:102248587:102248629,	102248227	102248481	102248398	102248398	Frame_Shift_Del	T	-	p.I513fs
LIHC	TCGA-DD-A3A0-01	MMP10	ENST00000539681.1	chr11	102649943:102650092:102650234:102650476:102651217:102651359,	102650235	102650476	102650395	102650395	Frame_Shift_Del	T	-	p.I63fs
LIHC	TCGA-DD-A3A0-01	DCUN1D5	ENST00000529281.1,ENST00000260247.5,ENST00000531571.1,ENST00000527260.1,ENST00000525420.1	chr11	102937216:102937296:102953476:102953568:102953984:102954055,	102953477	102953568	102953515	102953515	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-DD-A3A0-01	DCUN1D5	ENST00000527576.1	chr11	102937187:102937296:102953984:102954055:102962515:102962603,	102953985	102954055	102954018	102954018	Frame_Shift_Del	T	-	p.K72fs
LIHC	TCGA-DD-A3A0-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103156983:103157115:103158261:103158334:103173821:103173982,	103158262	103158334	103158325	103158325	Frame_Shift_Del	A	-	p.K3696fs
LIHC	TCGA-DD-A3A0-01	DYNC2H1	ENST00000528670.1,ENST00000398093.3,ENST00000375735.2	chr11	103194613:103194718:103228970:103229087:103270390:103270600,	103228971	103229087	103229019	103229019	Frame_Shift_Del	A	-	p.K4030fs
LIHC	TCGA-DD-A3A0-01	CASP4	ENST00000529183.1	chr11	104820387:104820504:104825473:104825728:104839245:104839274,	104825474	104825728	104825588	104825588	Frame_Shift_Del	T	-	p.T50fs
LIHC	TCGA-DD-A3A0-01	CASP1	ENST00000436863.3,ENST00000353247.5,ENST00000527979.1,ENST00000594519.1,ENST00000446369.1,ENST00000393136.4,ENST00000415981.2,ENST00000598974.1,ENST00000593315.1,ENST00000526568.1	chr11	104896247:104896327:104896952:104897083:104897568:104897678,	104896953	104897083	104897029	104897029	Frame_Shift_Del	T	-	p.R391fs
LIHC	TCGA-DD-A3A0-01	CWF19L2	ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107224249:107224462:107260799:107260937:107263504:107263621,	107260800	107260937	107260858	107260858	Frame_Shift_Del	T	-	p.N605fs
LIHC	TCGA-DD-A3A0-01	SLC35F2	ENST00000265836.7,ENST00000429869.1,ENST00000525815.1,ENST00000533664.1,ENST00000525071.1,ENST00000375682.4	chr11	107673726:107673881:107675443:107675496:107676084:107676241,	107675444	107675496	107675447	107675447	Frame_Shift_Del	T	-	p.I261fs
LIHC	TCGA-DD-A3A0-01	CUL5	ENST00000531427.1,ENST00000526303.1	chr11	107879985:107880098:107904527:107904637:107916996:107917096,	107904528	107904637	107904572	107904572	Frame_Shift_Del	C	-	p.R23fs
LIHC	TCGA-DD-A3A0-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920699	107920699	Frame_Shift_Del	T	-	p.I106fs
LIHC	TCGA-DD-A3A0-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107943058:107943189:107944116:107944224:107948902:107948967,	107944117	107944224	107944185	107944185	Frame_Shift_Del	T	-	p.A358fs
LIHC	TCGA-DD-A3A0-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107965538:107965714:107966256:107966418:107968362:107968481,	107966257	107966418	107966363	107966363	Frame_Shift_Del	A	-	p.E617fs
LIHC	TCGA-DD-A3A0-01	CUL5	ENST00000531427.1	chr11	107969187:107969256:107974916:107975629:107976933:107977579,	107974917	107975629	107974995	107974995	Frame_Shift_Del	A	-	p.K743fs
LIHC	TCGA-DD-A3A0-01	ACAT1	ENST00000527942.1,ENST00000299355.6,ENST00000524833.1,ENST00000265838.4,ENST00000531853.1,ENST00000531813.1	chr11	108002633:108002681:108004546:108004664:108004947:108004971,	108004547	108004664	108004577	108004577	Frame_Shift_Del	C	-	p.P51fs
LIHC	TCGA-DD-A3A0-01	ACAT1	ENST00000265838.4	chr11	108005868:108005969:108009624:108009768:108010791:108010898,	108009625	108009768	108009729	108009729	Frame_Shift_Del	A	-	p.V180fs
LIHC	TCGA-DD-A3A0-01	ACAT1	ENST00000265838.4	chr11	108013163:108013277:108014709:108014774:108016928:108017086,	108014710	108014774	108014741	108014741	Frame_Shift_Del	T	-	p.D324fs
LIHC	TCGA-DD-A3A0-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108043267	108043267	Frame_Shift_Del	A	-	p.L815fs
LIHC	TCGA-DD-A3A0-01	NPAT	ENST00000610253.1	chr11	108064683:108064744:108068028:108068147:108093226:108093343,	108068029	108068147	108068104	108068104	Frame_Shift_Del	A	-	p.F27fs
LIHC	TCGA-DD-A3A0-01	KDELC2	ENST00000375648.1,ENST00000323468.5,ENST00000434945.2,ENST00000530529.1	chr11	108351906:108352103:108352732:108352949:108356883:108356964,	108352733	108352949	108352762	108352762	Frame_Shift_Del	T	-	p.N235fs
LIHC	TCGA-DD-A3A0-01	RDX	ENST00000528498.1,ENST00000544551.1,ENST00000530131.1,ENST00000530749.1,ENST00000528900.1,ENST00000532461.1,ENST00000343115.4,ENST00000530085.1,ENST00000405097.1	chr11	110103961:110104204:110106823:110106916:110108216:110108377,	110106824	110106916	110106855	110106855	Frame_Shift_Del	T	-	p.K438fs
LIHC	TCGA-DD-A3A0-01	LAYN	ENST00000525866.1,ENST00000436913.2	chr11	111411454:111411653:111414647:111414945:111420342:111420500,111411454:111411653:111414647:111414945:111425285:111425318,	111414648	111414945	111414822	111414822	Frame_Shift_Del	A	-	p.E87fs
LIHC	TCGA-DD-A3A0-01	SIK2	ENST00000304987.3	chr11	111558724:111558886:111571609:111571734:111572175:111572299,	111571610	111571734	111571699	111571699	Frame_Shift_Del	G	-	p.G190fs
LIHC	TCGA-DD-A3A0-01	PPP2R1B	ENST00000534521.1,ENST00000427203.2,ENST00000311129.5,ENST00000341980.6,ENST00000426998.2,ENST00000393055.2,ENST00000527614.1	chr11	111625222:111625293:111625703:111625818:111626018:111626174,	111625704	111625818	111625784	111625784	Frame_Shift_Del	T	-	p.N293fs
LIHC	TCGA-DD-A3A0-01	DLAT	ENST00000533297.1,ENST00000280346.6	chr11	111899238:111899363:111899515:111899669:111904127:111904254,	111899516	111899669	111899655	111899655	Frame_Shift_Del	C	-	p.P217fs
LIHC	TCGA-DD-A3A0-01	PTS	ENST00000528679.1,ENST00000531673.1	chr11	112100930:112100953:112101348:112101405:112103885:112103956,112099316:112099396:112101348:112101405:112103885:112103951,	112101349	112101405	112101391	112101391	Frame_Shift_Del	A	-	p.K78fs
LIHC	TCGA-DD-A3A0-01	USP28	ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000537706.1	chr11	113685895:113686104:113688379:113688559:113694326:113694422,	113688380	113688559	113688490	113688490	Frame_Shift_Del	A	-	p.F451fs
LIHC	TCGA-DD-A3A0-01	USP28	ENST00000537490.1,ENST00000545540.1,ENST00000544967.1,ENST00000260188.5,ENST00000003302.4,ENST00000535607.1,ENST00000537706.1	chr11	113688552:113688559:113694326:113694422:113697954:113698082,	113694327	113694422	113694349	113694349	Frame_Shift_Del	T	-	p.I421fs
LIHC	TCGA-DD-A3A0-01	APOA1	ENST00000375323.1,ENST00000236850.4,ENST00000375320.1,ENST00000359492.2	chr11	116706979:116707127:116707716:116707873:116708060:116708123,	116707717	116707873	116707820	116707820	Frame_Shift_Del	C	-	p.D33fs
LIHC	TCGA-DD-A3A0-01	APOA1	ENST00000375323.1,ENST00000236850.4,ENST00000375320.1,ENST00000359492.2	chr11	116706979:116707127:116707716:116707873:116708060:116708123,	116707717	116707873	116707832	116707832	Frame_Shift_Del	G	-	p.Q29fs
LIHC	TCGA-DD-A3A0-01	SIK3	ENST00000375300.1,ENST00000434315.2,ENST00000465421.1,ENST00000415541.1,ENST00000542607.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116729980:116730320:116731989:116732099:116732556:116732642,	116731990	116732099	116732018	116732018	Frame_Shift_Del	G	-	p.P751fs
LIHC	TCGA-DD-A3A0-01	SIK3	ENST00000375300.1,ENST00000375288.1,ENST00000542607.1,ENST00000497049.1,ENST00000413553.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116767908:116768033:116797934:116798096:116824759:116824823,	116797935	116798096	116797941	116797941	Frame_Shift_Del	T	-	p.I204fs
LIHC	TCGA-DD-A3A0-01	PCSK7	ENST00000525027.1,ENST00000320934.3	chr11	117096646:117096737:117097872:117098038:117098931:117099066,	117097873	117098038	117097983	117097983	Frame_Shift_Del	G	-	p.P220fs
LIHC	TCGA-DD-A3A0-01	CEP164	ENST00000278935.3,ENST00000533675.1	chr11	117233119:117233254:117234144:117234222:117241795:117242182,	117234145	117234222	117234201	117234201	Frame_Shift_Del	G	-	p.L248fs
LIHC	TCGA-DD-A3A0-01	CEP164	ENST00000533223.1,ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117263211:117263343:117263719:117263842:117265065:117265209,	117263720	117263842	117263759	117263759	Frame_Shift_Del	G	-	p.G845fs
LIHC	TCGA-DD-A3A0-01	DSCAML1	ENST00000527706.1,ENST00000321322.6	chr11	117314601:117314755:117321264:117321404:117329469:117329625,	117321265	117321404	117321280	117321280	Frame_Shift_Del	G	-	p.P1291fs
LIHC	TCGA-DD-A3A0-01	DSCAML1	ENST00000321322.6	chr11	117395519:117395798:117403090:117403237:117647505:117647652,	117403091	117403237	117403224	117403224	Frame_Shift_Del	A	-	p.F235fs
LIHC	TCGA-DD-A3A0-01	IL10RA	ENST00000526544.1,ENST00000530761.1,ENST00000529924.1,ENST00000534574.1,ENST00000533700.1,ENST00000530178.1,ENST00000545409.1,ENST00000541785.1,ENST00000227752.3	chr11	117864713:117864864:117866303:117866425:117869429:117869660,	117866304	117866425	117866333	117866333	Frame_Shift_Del	T	-	p.F240fs
LIHC	TCGA-DD-A3A0-01	MPZL3	ENST00000446386.2	chr11	118104174:118104238:118106138:118106304:118107764:118107975,118104174:118104238:118106138:118106304:118110925:118111056,	118106139	118106304	118106275	118106275	Frame_Shift_Del	G	-	p.L162fs
LIHC	TCGA-DD-A3A0-01	KMT2A	ENST00000389506.5,ENST00000354520.4,ENST00000534358.1,ENST00000531904.2,ENST00000392873.3	chr11	118352702:118352807:118353136:118353210:118354897:118355029,	118353137	118353210	118353157	118353157	Frame_Shift_Del	A	-	p.K1346fs
LIHC	TCGA-DD-A3A0-01	TMEM25	ENST00000524522.1,ENST00000442938.2,ENST00000359862.4,ENST00000411589.2,ENST00000524725.1	chr11	118402492:118402586:118403631:118403922:118404571:118404602,118403124:118403176:118403631:118403922:118404134:118404192,118403124:118403176:118403631:118403922:118404571:118404602,	118403632	118403922	118403723	118403723	Frame_Shift_Del	C	-	p.N158fs
LIHC	TCGA-DD-A3A0-01	ARCN1	ENST00000392859.3,ENST00000264028.4,ENST00000359415.4	chr11	118461055:118461221:118463423:118463571:118464304:118464413,	118463424	118463571	118463442	118463442	Frame_Shift_Del	A	-	p.K377fs
LIHC	TCGA-DD-A3A0-01	ARCN1	ENST00000392859.3,ENST00000264028.4,ENST00000359415.4	chr11	118461055:118461221:118463423:118463571:118464304:118464413,	118463424	118463571	118463525	118463525	Frame_Shift_Del	A	-	p.L403fs
LIHC	TCGA-DD-A3A0-01	PHLDB1	ENST00000356063.5,ENST00000527259.1,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118486755:118486926:118495649:118495775:118498020:118498112,	118495650	118495775	118495736	118495736	Frame_Shift_Del	G	-	p.G149fs
LIHC	TCGA-DD-A3A0-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118495649:118495775:118498020:118499366:118501923:118502196,	118498021	118499366	118498742	118498742	Frame_Shift_Del	C	-	p.R401fs
LIHC	TCGA-DD-A3A0-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770884	118770884	Frame_Shift_Del	G	-	p.R1050fs
LIHC	TCGA-DD-A3A0-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850181	118850181	Frame_Shift_Del	G	-	p.Q138fs
LIHC	TCGA-DD-A3A0-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850218	118850218	Frame_Shift_Del	A	-	p.K151fs
LIHC	TCGA-DD-A3A0-01	SLC37A4	ENST00000530407.1,ENST00000538950.1,ENST00000527992.1,ENST00000525372.1,ENST00000524428.1,ENST00000545985.1,ENST00000525102.1,ENST00000526275.1	chr11	118895619:118895786:118895900:118896039:118896676:118896790,	118895901	118896039	118896030	118896030	Frame_Shift_Del	G	-	p.L332fs
LIHC	TCGA-DD-A3A0-01	SLC37A4	ENST00000524428.1	chr11	118897663:118897805:118898337:118899136:118899931:118900079,	118898338	118899136	118898354	118898354	Frame_Shift_Del	G	-	p.P203fs
LIHC	TCGA-DD-A3A0-01	SLC37A4	ENST00000526626.2	chr11	118897663:118897805:118898337:118898582:118898903:118899136,118897663:118897805:118898337:118898582:118899931:118900274,	118898338	118898582	118898354	118898354	Frame_Shift_Del	G	-	p.P203fs
LIHC	TCGA-DD-A3A0-01	VPS11	ENST00000531528.2,ENST00000527798.1,ENST00000300793.6,ENST00000529838.2	chr11	118948210:118948357:118948587:118948776:118948882:118949044,	118948588	118948776	118948601	118948601	Frame_Shift_Del	C	-	p.A528fs
LIHC	TCGA-DD-A3A0-01	VPS11	ENST00000531528.2,ENST00000527798.1,ENST00000300793.6,ENST00000529838.2	chr11	118949891:118950010:118951801:118952024:118952168:118952674,	118951802	118952024	118952003	118952003	Frame_Shift_Del	C	-	p.L879fs
LIHC	TCGA-DD-A3A0-01	DPAGT1	ENST00000409993.2	chr11	118971727:118971848:118972204:118972487:118972813:118973058,	118972205	118972487	118972221	118972221	Frame_Shift_Del	T	-	p.T49fs
LIHC	TCGA-DD-A3A0-01	HINFP	ENST00000527354.1	chr11	118997644:118997835:119001434:119001664:119002244:119002356,118992325:118992349:119001434:119001664:119002244:119002356,	119001435	119001664	119001651	119001651	Frame_Shift_Del	G	-	p.W133fs
LIHC	TCGA-DD-A3A0-01	PDZD3	ENST00000525131.1	chr11	119056633:119056661:119056800:119056950:119057187:119057399,	119056801	119056950	119056867	119056867	Frame_Shift_Del	C	-	p.D37fs
LIHC	TCGA-DD-A3A0-01	PDZD3	ENST00000533688.1,ENST00000322712.4,ENST00000529098.1,ENST00000527951.1,ENST00000527028.1,ENST00000355547.5	chr11	119056633:119056661:119056800:119056874:119057187:119057399,	119056801	119056874	119056867	119056867	Frame_Shift_Del	C	-	p.D37fs
LIHC	TCGA-DD-A3A0-01	USP2	ENST00000525735.1,ENST00000260187.2,ENST00000455332.2,ENST00000532613.1	chr11	119229733:119229844:119229940:119230052:119230246:119230370,	119229941	119230052	119230012	119230012	Frame_Shift_Del	G	-	p.P330fs
LIHC	TCGA-DD-A3A0-01	ARHGEF12	ENST00000356641.3	chr11	120207945:120207984:120276826:120276850:120278446:120278532,	120276827	120276850	120276837	120276837	Frame_Shift_Del	A	-	p.K16fs
LIHC	TCGA-DD-A3A0-01	ARHGEF12	ENST00000529970.1,ENST00000530747.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120331380:120331466:120335945:120336071:120337902:120338017,	120335946	120336071	120336039	120336039	Frame_Shift_Del	A	-	p.K904fs
LIHC	TCGA-DD-A3A0-01	TBCEL	ENST00000284259.7,ENST00000422003.2,ENST00000529397.1	chr11	120924338:120924441:120925760:120926017:120929053:120929169,	120925761	120926017	120925981	120925981	Frame_Shift_Del	T	-	p.F226fs
LIHC	TCGA-DD-A3A0-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	121058540:121058703:121059788:121059876:121060472:121060589,	121059789	121059876	121059872	121059872	Frame_Shift_Del	A	-	p.R2082fs
LIHC	TCGA-DD-A3A0-01	HSPA8	ENST00000534319.1,ENST00000534624.1,ENST00000227378.3,ENST00000526110.1,ENST00000524552.1,ENST00000533540.1,ENST00000532636.1	chr11	122928959:122929192:122929339:122929538:122929766:122929811,	122929340	122929538	122929457	122929457	Frame_Shift_Del	G	-	p.R469fs
LIHC	TCGA-DD-A3A0-01	TBRG1	ENST00000529543.1	chr11	124492889:124493129:124494826:124494897:124495566:124495799,124492889:124493129:124494826:124494897:124496799:124496831,	124494827	124494897	124494872	124494872	Frame_Shift_Del	T	-	p.F66fs
LIHC	TCGA-DD-A3A0-01	TBRG1	ENST00000441174.3	chr11	124495661:124495799:124496368:124496505:124496799:124496831,	124496369	124496505	124496463	124496463	Frame_Shift_Del	C	-	p.F183fs
LIHC	TCGA-DD-A3A0-01	VSIG2	ENST00000326621.5	chr11	124617367:124617563:124618285:124618430:124618539:124618659,	124618286	124618430	124618298	124618298	Frame_Shift_Del	C	-	p.G280fs
LIHC	TCGA-DD-A3A0-01	ESAM	ENST00000417453.1,ENST00000278927.5	chr11	124626484:124626638:124628244:124628423:124631980:124632176,	124628245	124628423	124628360	124628360	Frame_Shift_Del	C	-	p.G46fs
LIHC	TCGA-DD-A3A0-01	MSANTD2	ENST00000527140.1	chr11	124642889:124642950:124644614:124644727:124669766:124670279,	124644615	124644727	124644662	124644662	Frame_Shift_Del	C	-	p.G10fs
LIHC	TCGA-DD-A3A0-01	MSANTD2	ENST00000374979.3	chr11	124642889:124642950:124644614:124644870:124669766:124670279,	124644615	124644870	124644662	124644662	Frame_Shift_Del	C	-	p.G10fs
LIHC	TCGA-DD-A3A0-01	ROBO4	ENST00000306534.3,ENST00000533054.1	chr11	124754936:124755143:124756359:124756718:124756872:124756995,	124756360	124756718	124756593	124756593	Frame_Shift_Del	C	-	p.G854fs
LIHC	TCGA-DD-A3A0-01	CCDC15	ENST00000344762.5,ENST00000529051.1	chr11	124857022:124858030:124861356:124861479:124862475:124862583,	124861357	124861479	124861399	124861399	Frame_Shift_Del	A	-	p.K651fs
LIHC	TCGA-DD-A3A0-01	PKNOX2	ENST00000526955.1	chr11	125267769:125267958:125279934:125281761:125298907:125298984,	125279935	125281761	125280108	125280108	Frame_Shift_Del	C	-	p.S202fs
LIHC	TCGA-DD-A3A0-01	FEZ1	ENST00000278919.3,ENST00000527350.1,ENST00000524427.1	chr11	125322229:125322305:125324025:125324106:125325730:125326002,	125324026	125324106	125324094	125324094	Frame_Shift_Del	C	-	p.E318fs
LIHC	TCGA-DD-A3A0-01	STT3A	ENST00000531491.1,ENST00000534472.1,ENST00000529196.1,ENST00000392708.4	chr11	125472197:125472319:125472697:125472843:125474051:125474142,	125472698	125472843	125472738	125472738	Frame_Shift_Del	T	-	p.H104fs
LIHC	TCGA-DD-A3A0-01	CHEK1	ENST00000524737.1,ENST00000427383.2,ENST00000534070.1,ENST00000528276.1,ENST00000532449.1,ENST00000428830.2,ENST00000438015.1	chr11	125513985:125514163:125514406:125514538:125523640:125523742,	125514407	125514538	125514428	125514428	Frame_Shift_Del	A	-	p.K375fs
LIHC	TCGA-DD-A3A0-01	FAM118B	ENST00000525728.1	chr11	126104889:126104982:126110686:126110939:126120400:126120520,126099119:126099188:126110686:126110939:126120400:126120520,	126110687	126110939	126110842	126110842	Frame_Shift_Del	T	-	p.L82fs
LIHC	TCGA-DD-A3A0-01	TIRAP	ENST00000392680.2,ENST00000479770.1,ENST00000392679.1	chr11	126160750:126160856:126162371:126162950:126163562:126164534,	126162372	126162950	126162413	126162413	Frame_Shift_Del	C	-	p.P37fs
LIHC	TCGA-DD-A3A0-01	TIRAP	ENST00000392680.2,ENST00000479770.1,ENST00000392679.1	chr11	126160750:126160856:126162371:126162950:126163562:126164534,	126162372	126162950	126162903	126162903	Frame_Shift_Del	G	-	p.R200fs
LIHC	TCGA-DD-A3A0-01	ETS1	ENST00000535549.1	chr11	128333403:128333522:128350085:128350346:128354717:128354966,128333403:128333522:128350085:128350346:128391807:128392205,	128350086	128350346	128350334	128350334	Frame_Shift_Del	C	-	p.G292fs
LIHC	TCGA-DD-A3A0-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842603	128842603	Frame_Shift_Del	G	-	p.P1252fs
LIHC	TCGA-DD-A3A0-01	ARHGAP32	ENST00000524655.1,ENST00000310343.9,ENST00000525234.1	chr11	128936638:128936763:128963515:128963602:128993340:128993425,	128963516	128963602	128963565	128963565	Frame_Shift_Del	T	-	p.N147fs
LIHC	TCGA-DD-A3A0-01	NFRKB	ENST00000531755.1	chr11	129746615:129746790:129747219:129747280:129748205:129748246,	129747220	129747280	129747229	129747229	Frame_Shift_Del	A	-	p.F521fs
LIHC	TCGA-DD-A3A0-01	PRDM10	ENST00000533431.1,ENST00000304538.6,ENST00000528746.1,ENST00000360871.3	chr11	129793142:129793298:129794776:129795124:129800910:129801153,	129794777	129795124	129794890	129794890	Frame_Shift_Del	A	-	p.C593fs
LIHC	TCGA-DD-A3A0-01	PRDM10	ENST00000423662.2,ENST00000358825.5,ENST00000304538.6,ENST00000526082.1,ENST00000528746.1,ENST00000360871.3	chr11	129812320:129812524:129814665:129814907:129817039:129817187,	129814666	129814907	129814800	129814800	Frame_Shift_Del	G	-	p.L210fs
LIHC	TCGA-DD-A3A0-01	APLP2	ENST00000527702.1	chr11	129939788:129939977:129980432:129980556:129990600:129990713,	129980433	129980556	129980511	129980511	Frame_Shift_Del	A	-	p.K121fs
LIHC	TCGA-DD-A3A0-01	APLP2	ENST00000539648.1,ENST00000533616.1,ENST00000263574.5	chr11	130005457:130005610:130007150:130007186:130010292:130010342,	130007151	130007186	130007180	130007180	Frame_Shift_Del	A	-	p.K624fs
LIHC	TCGA-DD-A3A0-01	NTM	ENST00000436745.1	chr11	131240701:131240783:131530822:131530942:131781457:131781510,	131530823	131530942	131530906	131530906	Frame_Shift_Del	G	-	p.G7fs
LIHC	TCGA-DD-A3A0-01	NTM	ENST00000498764.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000496094.1,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132177582:132177717:132180005:132180126:132184445:132184493,	132180006	132180126	132180058	132180058	Frame_Shift_Del	G	-	p.K238fs
LIHC	TCGA-DD-A3A0-01	IGSF9B	ENST00000321016.8,ENST00000527648.2,ENST00000533871.2	chr11	133796810:133796986:133799565:133799677:133800878:133801029,	133799566	133799677	133799609	133799609	Frame_Shift_Del	C	-	p.E530fs
LIHC	TCGA-DD-A3A0-01	IGSF9B	ENST00000321016.8,ENST00000527648.2,ENST00000533871.2	chr11	133801965:133802108:133805511:133805657:133805947:133806089,	133805512	133805657	133805582	133805582	Frame_Shift_Del	C	-	p.G299fs
LIHC	TCGA-DD-A3A0-01	JAM3	ENST00000531302.1,ENST00000524969.1,ENST00000529443.2,ENST00000299106.4,ENST00000532165.1,ENST00000532252.1	chr11	134010551:134010665:134014135:134014288:134014686:134014721,	134014136	134014288	134014164	134014164	Frame_Shift_Del	G	-	p.L95fs
LIHC	TCGA-DD-A3A0-01	NCAPD3	ENST00000533155.1	chr11	134079206:134079371:134080163:134080348:134090465:134090620,	134080164	134080348	134080196	134080196	Frame_Shift_Del	T	-	p.R179fs
LIHC	TCGA-DD-A3A0-01	THYN1	ENST00000392595.2,ENST00000392594.3,ENST00000341541.3	chr11	134118181:134118378:134118702:134118853:134119060:134119156,	134118703	134118853	134118761	134118761	Frame_Shift_Del	G	-	p.P191fs
LIHC	TCGA-DD-A3A0-01	SLC6A12	ENST00000542825.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	304391:304493:305289:305427:305935:306048,	305290	305427	305359	305359	Frame_Shift_Del	C	-	p.G419fs
LIHC	TCGA-DD-A3A0-01	SLC6A13	ENST00000539260.1,ENST00000343164.4,ENST00000536842.1	chr12	347113:347176:369016:369223:371954:371982,352844:352979:369016:369223:371954:371982,	369017	369223	369019	369019	Frame_Shift_Del	C	-	p.G68fs
LIHC	TCGA-DD-A3A0-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	431582:431733:432247:432372:432765:432947,	432248	432372	432324	432324	Frame_Shift_Del	T	-	p.K733fs
LIHC	TCGA-DD-A3A0-01	B4GALNT3	ENST00000535402.1,ENST00000266383.5	chr12	667181:667254:667673:667827:668460:668587,	667674	667827	667803	667803	Frame_Shift_Del	G	-	p.G913fs
LIHC	TCGA-DD-A3A0-01	WNK1	ENST00000315939.6,ENST00000537687.1,ENST00000340908.4,ENST00000530271.2,ENST00000535572.1	chr12	1006763:1006847:1009641:1009836:1017012:1017122,	1009642	1009836	1009679	1009679	Frame_Shift_Del	C	-	p.H2422fs
LIHC	TCGA-DD-A3A0-01	ERC1	ENST00000538971.2,ENST00000592048.1,ENST00000543086.3,ENST00000440394.3,ENST00000347735.6	chr12	1213915:1213990:1219357:1219513:1225031:1225199,	1219358	1219513	1219449	1219449	Frame_Shift_Del	A	-	p.E418fs
LIHC	TCGA-DD-A3A0-01	ERC1	ENST00000589028.1,ENST00000355446.5,ENST00000536573.2,ENST00000546231.2,ENST00000538971.2,ENST00000360905.4,ENST00000543086.3,ENST00000545948.1,ENST00000542302.2,ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1289705:1289843:1291090:1291231:1292446:1292587,	1291091	1291231	1291111	1291111	Frame_Shift_Del	A	-	p.L632fs
LIHC	TCGA-DD-A3A0-01	WNT5B	ENST00000397196.2,ENST00000310594.3,ENST00000537031.1,ENST00000543071.1	chr12	1741831:1742071:1748849:1749142:1754959:1755099,	1748850	1749142	1749080	1749080	Frame_Shift_Del	A	-	p.K187fs
LIHC	TCGA-DD-A3A0-01	ADIPOR2	ENST00000357103.4	chr12	1889616:1889803:1890054:1890242:1893045:1893239,	1890055	1890242	1890195	1890195	Frame_Shift_Del	C	-	p.S264fs
LIHC	TCGA-DD-A3A0-01	ADIPOR2	ENST00000357103.4	chr12	1889616:1889803:1890054:1890242:1893045:1893239,	1890055	1890242	1890216	1890216	Frame_Shift_Del	C	-	p.T271fs
LIHC	TCGA-DD-A3A0-01	DCP1B	ENST00000280665.6,ENST00000397173.4,ENST00000543381.1	chr12	2055317:2055452:2058251:2058500:2061581:2062454,	2058252	2058500	2058325	2058325	Frame_Shift_Del	G	-	p.P567fs
LIHC	TCGA-DD-A3A0-01	DCP1B	ENST00000280665.6,ENST00000397173.4,ENST00000543381.1	chr12	2055317:2055452:2058251:2058500:2061581:2062454,	2058252	2058500	2058444	2058444	Frame_Shift_Del	G	-	p.P527fs
LIHC	TCGA-DD-A3A0-01	CACNA1C	ENST00000347598.4,ENST00000399606.1	chr12	2705039:2705169:2706395:2706455:2711019:2711126,2705039:2705169:2706395:2706455:2706602:2706662,	2706396	2706455	2706407	2706407	Frame_Shift_Del	T	-	p.Y935fs
LIHC	TCGA-DD-A3A0-01	CACNA1C	ENST00000399649.1	chr12	2721068:2721179:2743462:2743540:2760805:2760913,	2743463	2743540	2743493	2743493	Frame_Shift_Del	G	-	p.D1287fs
LIHC	TCGA-DD-A3A0-01	CACNA1C	ENST00000399629.1	chr12	2721068:2721179:2743462:2743546:2757640:2757673,2721068:2721179:2743462:2743546:2760805:2760913,2742794:2742878:2743462:2743546:2757640:2757673,2742794:2742878:2743462:2743546:2760805:2760913,	2743463	2743546	2743493	2743493	Frame_Shift_Del	G	-	p.D1287fs
LIHC	TCGA-DD-A3A0-01	CACNA1C	ENST00000399638.1,ENST00000406454.3,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000399603.1,ENST00000399617.1,ENST00000399641.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000399634.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2795331:2795435:2797612:2797945:2800065:2800459,	2797613	2797945	2797681	2797681	Frame_Shift_Del	T	-	p.P1951fs
LIHC	TCGA-DD-A3A0-01	FOXM1	ENST00000361953.3,ENST00000538564.1	chr12	2974520:2974565:2975558:2975687:2977728:2977747,2973848:2973918:2975558:2975687:2977728:2977747,	2975559	2975687	2975666	2975666	Frame_Shift_Del	A	-	p.S290fs
LIHC	TCGA-DD-A3A0-01	TULP3	ENST00000538354.1	chr12	3042599:3042696:3043612:3043727:3046796:3046895,3040202:3040406:3043612:3043727:3046796:3046895,	3043613	3043727	3043625	3043625	Frame_Shift_Del	G	-	p.M274fs
LIHC	TCGA-DD-A3A0-01	TEAD4	ENST00000359864.2,ENST00000358409.2,ENST00000397122.2	chr12	3129799:3129939:3131009:3131183:3147133:3147274,	3131010	3131183	3131063	3131063	Frame_Shift_Del	C	-	p.D259fs
LIHC	TCGA-DD-A3A0-01	TEAD4	ENST00000359864.2,ENST00000358409.2,ENST00000397122.2	chr12	3131009:3131183:3147133:3147274:3149272:3149425,	3147134	3147274	3147235	3147235	Frame_Shift_Del	G	-	p.K333fs
LIHC	TCGA-DD-A3A0-01	ANO2	ENST00000327087.8,ENST00000546188.1,ENST00000356134.5	chr12	5848482:5848565:5853322:5853483:5860001:5860136,	5853323	5853483	5853440	5853440	Frame_Shift_Del	G	-	p.L409fs
LIHC	TCGA-DD-A3A0-01	VWF	ENST00000261405.5	chr12	6058999:6059049:6061009:6061049:6061556:6061685,	6061010	6061049	6061043	6061043	Frame_Shift_Del	T	-	p.I2708fs
LIHC	TCGA-DD-A3A0-01	VWF	ENST00000261405.5	chr12	6138507:6138654:6140609:6140744:6143853:6143992,	6140610	6140744	6140721	6140721	Frame_Shift_Del	C	-	p.G903fs
LIHC	TCGA-DD-A3A0-01	TAPBPL	ENST00000266556.7,ENST00000543567.1,ENST00000539384.1,ENST00000545700.1	chr12	6567810:6568113:6570020:6570104:6571199:6571409,	6570021	6570104	6570085	6570085	Frame_Shift_Del	G	-	p.L424fs
LIHC	TCGA-DD-A3A0-01	NCAPD2	ENST00000382457.4,ENST00000545732.1,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6623638:6623753:6623938:6624086:6625993:6626037,	6623939	6624086	6623958	6623958	Frame_Shift_Del	C	-	p.P287fs
LIHC	TCGA-DD-A3A0-01	NCAPD2	ENST00000382457.4,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6626958:6627125:6630151:6630276:6630963:6631099,	6630152	6630276	6630221	6630221	Frame_Shift_Del	C	-	p.D553fs
LIHC	TCGA-DD-A3A0-01	NCAPD2	ENST00000542472.1	chr12	6626958:6627125:6630135:6630276:6630963:6631099,	6630136	6630276	6630221	6630221	Frame_Shift_Del	C	-	p.D553fs
LIHC	TCGA-DD-A3A0-01	NCAPD2	ENST00000382457.4,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6626958:6627125:6630151:6630276:6630963:6631099,	6630152	6630276	6630236	6630236	Frame_Shift_Del	G	-	p.E559fs
LIHC	TCGA-DD-A3A0-01	NCAPD2	ENST00000542472.1	chr12	6626958:6627125:6630135:6630276:6630963:6631099,	6630136	6630276	6630236	6630236	Frame_Shift_Del	G	-	p.E559fs
LIHC	TCGA-DD-A3A0-01	GAPDH	ENST00000396861.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646474:6646556:6646749:6647162:6647266:6647283,	6646750	6647162	6646825	6646825	Frame_Shift_Del	G	-	p.G201fs
LIHC	TCGA-DD-A3A0-01	CHD4	ENST00000309577.6,ENST00000544484.1,ENST00000357008.2,ENST00000544040.1	chr12	6687574:6687712:6688011:6688083:6690209:6690339,	6688012	6688083	6688032	6688032	Frame_Shift_Del	G	-	p.P1682fs
LIHC	TCGA-DD-A3A0-01	CHD4	ENST00000357008.2,ENST00000544040.1	chr12	6692192:6692279:6692363:6692544:6696549:6696725,	6692364	6692544	6692412	6692412	Frame_Shift_Del	T	-	p.R1338fs
LIHC	TCGA-DD-A3A0-01	CHD4	ENST00000540960.1	chr12	6692192:6692279:6692363:6692541:6696549:6696725,	6692364	6692541	6692412	6692412	Frame_Shift_Del	T	-	p.R1338fs
LIHC	TCGA-DD-A3A0-01	CHD4	ENST00000309577.6,ENST00000544484.1,ENST00000357008.2,ENST00000544040.1,ENST00000545942.1	chr12	6709700:6709835:6710091:6710219:6710454:6710696,	6710092	6710219	6710116	6710116	Frame_Shift_Del	A	-	p.F301fs
LIHC	TCGA-DD-A3A0-01	PIANP	ENST00000534837.1,ENST00000540656.1,ENST00000320591.5	chr12	6805608:6805690:6806452:6806958:6807210:6807270,	6806453	6806958	6806812	6806812	Frame_Shift_Del	G	-	p.P55fs
LIHC	TCGA-DD-A3A0-01	PIANP	ENST00000534837.1,ENST00000540656.1,ENST00000320591.5	chr12	6805608:6805690:6806452:6806958:6807210:6807270,	6806453	6806958	6806899	6806899	Frame_Shift_Del	G	-	p.P28fs
LIHC	TCGA-DD-A3A0-01	LAG3	ENST00000203629.2,ENST00000538079.1	chr12	6884438:6884714:6886429:6886672:6886956:6887087,	6886430	6886672	6886620	6886620	Frame_Shift_Del	G	-	p.Q416fs
LIHC	TCGA-DD-A3A0-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6923986	6923986	Frame_Shift_Del	C	-	p.S145fs
LIHC	TCGA-DD-A3A0-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
LIHC	TCGA-DD-A3A0-01	TPI1	ENST00000396705.5	chr12	6976694:6976845:6978027:6978151:6978262:6978347,	6978028	6978151	6978129	6978129	Frame_Shift_Del	G	-	p.G110fs
LIHC	TCGA-DD-A3A0-01	ATN1	ENST00000356654.4,ENST00000396684.2	chr12	7047007:7047230:7047643:7048340:7050042:7050186,	7047644	7048340	7047743	7047743	Frame_Shift_Del	C	-	p.P874fs
LIHC	TCGA-DD-A3A0-01	PTPN6	ENST00000540740.1,ENST00000545153.1	chr12	7055872:7055902:7061074:7061340:7063967:7064010,7060771:7060894:7061074:7061340:7063967:7064010,	7061075	7061340	7061308	7061308	Frame_Shift_Del	C	-	p.Y98fs
LIHC	TCGA-DD-A3A0-01	PTPN6	ENST00000399448.1,ENST00000541698.1,ENST00000538318.1,ENST00000318974.9,ENST00000538715.1,ENST00000456013.1,ENST00000539365.1	chr12	7055872:7055902:7061145:7061340:7063967:7064010,7060771:7060894:7061145:7061340:7063967:7064010,	7061146	7061340	7061308	7061308	Frame_Shift_Del	C	-	p.Y98fs
LIHC	TCGA-DD-A3A0-01	PTPN6	ENST00000542848.1,ENST00000536013.1	chr12	7060771:7060894:7061275:7061340:7063967:7064010,	7061276	7061340	7061308	7061308	Frame_Shift_Del	C	-	p.Y98fs
LIHC	TCGA-DD-A3A0-01	PTPN6	ENST00000535462.1	chr12	7060771:7060894:7061179:7061340:7063967:7064010,	7061180	7061340	7061308	7061308	Frame_Shift_Del	C	-	p.Y98fs
LIHC	TCGA-DD-A3A0-01	LPCAT3	ENST00000261407.4,ENST00000543794.1,ENST00000540090.1	chr12	7086860:7086907:7087502:7087669:7087764:7087851,	7087503	7087669	7087620	7087620	Frame_Shift_Del	T	-	p.K308fs
LIHC	TCGA-DD-A3A0-01	LPCAT3	ENST00000535021.1	chr12	7086528:7086687:7087582:7087669:7087764:7087851,	7087583	7087669	7087620	7087620	Frame_Shift_Del	T	-	p.K308fs
LIHC	TCGA-DD-A3A0-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000413211.1,ENST00000360817.5,ENST00000403949.1,ENST00000423384.1,ENST00000443875.1	chr12	7169142:7169221:7169778:7169986:7170193:7170282,	7169779	7169986	7169792	7169792	Frame_Shift_Del	T	-	p.F7fs
LIHC	TCGA-DD-A3A0-01	C1RL	ENST00000266542.4,ENST00000545337.1,ENST00000543933.1,ENST00000544702.1	chr12	7254599:7254683:7260846:7261075:7261705:7261724,	7260847	7261075	7260999	7260999	Frame_Shift_Del	G	-	p.Q51fs
LIHC	TCGA-DD-A3A0-01	CLSTN3	ENST00000535313.1	chr12	7303523:7303659:7310084:7310287:7310536:7310901,7309306:7309525:7310084:7310287:7310536:7310901,	7310085	7310287	7310233	7310233	Frame_Shift_Del	C	-	p.D904fs
LIHC	TCGA-DD-A3A0-01	CLSTN3	ENST00000331148.5	chr12	7309306:7309525:7310084:7310342:7310536:7310901,	7310085	7310342	7310233	7310233	Frame_Shift_Del	C	-	p.D904fs
LIHC	TCGA-DD-A3A0-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7639094:7639409:7639489:7639582:7639954:7640269,	7639490	7639582	7639579	7639579	Frame_Shift_Del	T	-	p.N685fs
LIHC	TCGA-DD-A3A0-01	SLC2A14	ENST00000543909.1,ENST00000539924.1,ENST00000431042.2,ENST00000537557.1,ENST00000340749.5,ENST00000542782.1,ENST00000535344.1,ENST00000546234.1,ENST00000535266.1,ENST00000396589.2	chr12	7982583:7982602:7984199:7984360:7985317:7985361,	7984200	7984360	7984258	7984258	Frame_Shift_Del	A	-	p.S95fs
LIHC	TCGA-DD-A3A0-01	SLC2A3	ENST00000486749.1,ENST00000479059.3,ENST00000075120.7	chr12	8075416:8075620:8077005:8077107:8078439:8078544,	8077006	8077107	8077041	8077041	Frame_Shift_Del	A	-	p.C345fs
LIHC	TCGA-DD-A3A0-01	CLEC4E	ENST00000537698.1	chr12	8688685:8688801:8689710:8689862:8691812:8691851,8687358:8687405:8689710:8689862:8691812:8691851,	8689711	8689862	8689822	8689822	Frame_Shift_Del	A	-	p.F87fs
LIHC	TCGA-DD-A3A0-01	PHC1	ENST00000536844.1,ENST00000540574.1,ENST00000543824.1,ENST00000433083.2,ENST00000544916.1	chr12	9087719:9087834:9089451:9089560:9089771:9089845,	9089452	9089560	9089503	9089503	Frame_Shift_Del	C	-	p.A762fs
LIHC	TCGA-DD-A3A0-01	A2M	ENST00000404455.2	chr12	9265955:9266139:9268359:9268462:9268723:9268825,	9268360	9268462	9268362	9268362	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-DD-A3A0-01	CLEC2B	ENST00000228438.2	chr12	10005731:10006007:10006979:10007083:10010072:10010236,	10006980	10007083	10007022	10007022	Frame_Shift_Del	T	-	p.N100fs
LIHC	TCGA-DD-A3A0-01	CLEC1A	ENST00000457018.2	chr12	10228102:10228254:10233835:10234012:10251406:10251529,	10233836	10234012	10233943	10233943	Frame_Shift_Del	T	-	p.N95fs
LIHC	TCGA-DD-A3A0-01	ETV6	ENST00000396373.4	chr12	11992073:11992238:12006360:12006495:12022357:12022903,	12006361	12006495	12006380	12006380	Frame_Shift_Del	C	-	p.L117fs
LIHC	TCGA-DD-A3A0-01	BCL2L14	ENST00000308721.5	chr12	12223872:12224071:12232232:12232672:12240146:12240243,	12232233	12232672	12232275	12232275	Frame_Shift_Del	C	-	p.I12fs
LIHC	TCGA-DD-A3A0-01	LRP6	ENST00000543091.1	chr12	12356136:12356334:12397195:12397589:12419614:12419703,	12397196	12397589	12397538	12397538	Frame_Shift_Del	G	-	p.A36fs
LIHC	TCGA-DD-A3A0-01	EMP1	ENST00000544053.1	chr12	13349719:13349806:13366412:13366509:13366614:13366755,	13366413	13366509	13366453	13366453	Frame_Shift_Del	T	-	p.L40fs
LIHC	TCGA-DD-A3A0-01	EMP1	ENST00000544053.1	chr12	13349719:13349806:13366412:13366509:13366614:13366755,	13366413	13366509	13366458	13366458	Frame_Shift_Del	A	-	p.K42fs
LIHC	TCGA-DD-A3A0-01	EPS8	ENST00000543523.1,ENST00000543468.1,ENST00000546311.1,ENST00000543612.1,ENST00000535752.1,ENST00000281172.5	chr12	15822601:15822759:15823789:15823857:15834159:15834236,	15823790	15823857	15823793	15823793	Frame_Shift_Del	A	-	p.V67fs
LIHC	TCGA-DD-A3A0-01	PIK3C2G	ENST00000546003.1	chr12	18435640:18435693:18439787:18439863:18443788:18443946,	18439788	18439863	18439843	18439843	Frame_Shift_Del	T	-	p.S247fs
LIHC	TCGA-DD-A3A0-01	PIK3C2G	ENST00000538779.1,ENST00000266497.5,ENST00000535651.1,ENST00000536967.1,ENST00000433979.1	chr12	18435640:18435693:18439780:18439863:18443788:18443946,	18439781	18439863	18439843	18439843	Frame_Shift_Del	T	-	p.S247fs
LIHC	TCGA-DD-A3A0-01	PIK3C2G	ENST00000266497.5,ENST00000433979.1	chr12	18499722:18499770:18524113:18524245:18534699:18534814,	18524114	18524245	18524240	18524240	Frame_Shift_Del	A	-	p.P584fs
LIHC	TCGA-DD-A3A0-01	PIK3C2G	ENST00000538779.1,ENST00000546003.1,ENST00000266497.5,ENST00000433979.1	chr12	18656214:18656351:18658225:18658395:18691089:18691246,	18658226	18658395	18658238	18658238	Frame_Shift_Del	T	-	p.F1016fs
LIHC	TCGA-DD-A3A0-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000429027.2,ENST00000424268.1,ENST00000543806.1	chr12	19498775:19498822:19499927:19500116:19501332:19501453,	19499928	19500116	19499999	19499999	Frame_Shift_Del	C	-	p.I927fs
LIHC	TCGA-DD-A3A0-01	AEBP2	ENST00000541908.1,ENST00000512223.2,ENST00000266508.9,ENST00000360995.4,ENST00000398864.3,ENST00000398731.2	chr12	19653062:19653155:19665331:19665399:19667604:19667718,	19665332	19665399	19665372	19665372	Frame_Shift_Del	T	-	p.L449fs
LIHC	TCGA-DD-A3A0-01	AEBP2	ENST00000541908.1,ENST00000512223.2,ENST00000266508.9,ENST00000360995.4,ENST00000398864.3,ENST00000398731.2	chr12	19665331:19665399:19667604:19667718:19671020:19671047,	19667605	19667718	19667647	19667647	Frame_Shift_Del	A	-	p.L470fs
LIHC	TCGA-DD-A3A0-01	AEBP2	ENST00000541908.1,ENST00000512223.2,ENST00000266508.9,ENST00000360995.4,ENST00000398864.3,ENST00000398731.2	chr12	19665331:19665399:19667604:19667718:19671020:19671047,	19667605	19667718	19667697	19667697	Frame_Shift_Del	T	-	p.L488fs
LIHC	TCGA-DD-A3A0-01	PDE3A	ENST00000359062.3,ENST00000544307.1	chr12	20782841:20783061:20786626:20786712:20787835:20787990,	20786627	20786712	20786682	20786682	Frame_Shift_Del	G	-	p.G606fs
LIHC	TCGA-DD-A3A0-01	PYROXD1	ENST00000375266.4,ENST00000538582.1,ENST00000240651.9	chr12	21602496:21602625:21605014:21605088:21608065:21608226,	21605015	21605088	21605042	21605042	Frame_Shift_Del	A	-	p.K77fs
LIHC	TCGA-DD-A3A0-01	GOLT1B	ENST00000545093.1	chr12	21654786:21654882:21659818:21659910:21661316:21661495,21654786:21654882:21659818:21659910:21665228:21665310,	21659819	21659910	21659863	21659863	Frame_Shift_Del	T	-	p.F24fs
LIHC	TCGA-DD-A3A0-01	GOLT1B	ENST00000539663.1,ENST00000539025.1	chr12	21660050:21660085:21661316:21661495:21665228:21665310,21659818:21659910:21661316:21661495:21665228:21665310,21654786:21654882:21661316:21661495:21665228:21665310,21660877:21661043:21661316:21661495:21665228:21665310,	21661317	21661495	21661389	21661389	Frame_Shift_Del	A	-	p.K64fs
LIHC	TCGA-DD-A3A0-01	ABCC9	ENST00000544039.1,ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	21991011:21991104:21995247:21995405:21997416:21997486,	21995248	21995405	21995343	21995343	Frame_Shift_Del	C	-	p.G1126fs
LIHC	TCGA-DD-A3A0-01	ABCC9	ENST00000544039.1,ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	22015886:22015988:22017372:22017411:22025558:22025664,	22017373	22017411	22017387	22017387	Frame_Shift_Del	A	-	p.F741fs
LIHC	TCGA-DD-A3A0-01	ABCC9	ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	22065805:22066000:22068601:22068844:22069870:22070037,	22068602	22068844	22068831	22068831	Frame_Shift_Del	A	-	p.F196fs
LIHC	TCGA-DD-A3A0-01	C2CD5	ENST00000333957.4	chr12	22606829:22606976:22609904:22610095:22622642:22622729,	22609905	22610095	22609960	22609960	Frame_Shift_Del	T	-	p.K890fs
LIHC	TCGA-DD-A3A0-01	C2CD5	ENST00000544930.1,ENST00000396028.2,ENST00000536386.1,ENST00000545552.1,ENST00000333957.4,ENST00000542676.1,ENST00000446597.1	chr12	22627684:22627825:22631246:22631411:22635490:22635677,	22631247	22631411	22631386	22631386	Frame_Shift_Del	G	-	p.A588fs
LIHC	TCGA-DD-A3A0-01	C2CD5	ENST00000542683.1	chr12	22646156:22646271:22666227:22666313:22670919:22671071,	22666228	22666313	22666279	22666279	Frame_Shift_Del	C	-	p.G329fs
LIHC	TCGA-DD-A3A0-01	C2CD5	ENST00000544930.1,ENST00000541310.1,ENST00000396028.2,ENST00000536386.1,ENST00000545552.1,ENST00000333957.4,ENST00000542676.1,ENST00000446597.1	chr12	22680654:22680826:22688191:22688278:22696994:22697113,	22688192	22688278	22688223	22688223	Frame_Shift_Del	G	-	p.P49fs
LIHC	TCGA-DD-A3A0-01	KRAS	ENST00000311936.3,ENST00000256078.4	chr12	25378547:25378707:25380167:25380346:25398207:25398329,	25380168	25380346	25380239	25380239	Frame_Shift_Del	C	-	p.R73fs
LIHC	TCGA-DD-A3A0-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217805	26217805	Frame_Shift_Del	A	-	p.K160fs
LIHC	TCGA-DD-A3A0-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217829	26217829	Frame_Shift_Del	A	-	p.K168fs
LIHC	TCGA-DD-A3A0-01	TM7SF3	ENST00000343028.4,ENST00000545344.1	chr12	27127086:27127160:27128428:27128591:27129192:27129290,	27128429	27128591	27128439	27128439	Frame_Shift_Del	A	-	p.F480fs
LIHC	TCGA-DD-A3A0-01	TM7SF3	ENST00000535260.1,ENST00000343028.4,ENST00000543655.1,ENST00000545303.1,ENST00000535819.1	chr12	27136425:27136529:27143382:27143560:27148169:27148201,27135705:27135792:27143382:27143560:27148169:27148201,	27143383	27143560	27143512	27143512	Frame_Shift_Del	G	-	p.L247fs
LIHC	TCGA-DD-A3A0-01	STK38L	ENST00000543246.1,ENST00000544969.1,ENST00000546286.1,ENST00000541191.1,ENST00000389032.3,ENST00000407753.2	chr12	27455073:27455121:27461271:27461394:27462046:27462130,	27461272	27461394	27461385	27461385	Frame_Shift_Del	T	-	p.A100fs
LIHC	TCGA-DD-A3A0-01	STK38L	ENST00000545470.1,ENST00000539577.1,ENST00000389032.3	chr12	27462046:27462130:27465481:27465605:27467436:27467591,	27465482	27465605	27465510	27465510	Frame_Shift_Del	T	-	p.I141fs
LIHC	TCGA-DD-A3A0-01	PPFIBP1	ENST00000540114.1,ENST00000542629.1,ENST00000537927.1,ENST00000318304.8	chr12	27809548:27809663:27813816:27813878:27817294:27817370,	27813817	27813878	27813829	27813829	Frame_Shift_Del	A	-	p.Q306fs
LIHC	TCGA-DD-A3A0-01	MRPS35	ENST00000542199.1,ENST00000538315.1,ENST00000081029.3	chr12	27867712:27867753:27869223:27869391:27872740:27872801,	27869224	27869391	27869276	27869276	Frame_Shift_Del	T	-	p.V69fs
LIHC	TCGA-DD-A3A0-01	MRPS35	ENST00000542199.1,ENST00000538315.1,ENST00000081029.3	chr12	27867712:27867753:27869223:27869391:27872740:27872801,	27869224	27869391	27869318	27869318	Frame_Shift_Del	T	-	p.L83fs
LIHC	TCGA-DD-A3A0-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450017	29450017	Frame_Shift_Del	A	-	p.P143fs
LIHC	TCGA-DD-A3A0-01	IPO8	ENST00000544829.1,ENST00000256079.4	chr12	30789915:30790121:30792448:30792669:30802070:30802166,	30792449	30792669	30792551	30792551	Frame_Shift_Del	A	-	p.L798fs
LIHC	TCGA-DD-A3A0-01	CAPRIN2	ENST00000537553.1	chr12	30869556:30869610:30872012:30873849:30876192:30876248,	30872013	30873849	30872146	30872146	Frame_Shift_Del	G	-	p.P721fs
LIHC	TCGA-DD-A3A0-01	CAPRIN2	ENST00000395805.2	chr12	30869556:30869610:30872012:30872159:30873744:30873849,30869556:30869610:30872012:30872159:30876192:30876248,	30872013	30872159	30872146	30872146	Frame_Shift_Del	G	-	p.P721fs
LIHC	TCGA-DD-A3A0-01	CAPRIN2	ENST00000308433.5,ENST00000454014.2,ENST00000548676.1,ENST00000417045.1,ENST00000537108.1,ENST00000251071.5,ENST00000433722.2	chr12	30869556:30869610:30873744:30873849:30876192:30876248,30872012:30872159:30873744:30873849:30876192:30876248,	30873745	30873849	30873828	30873828	Frame_Shift_Del	A	-	p.C689fs
LIHC	TCGA-DD-A3A0-01	CAPRIN2	ENST00000537553.1	chr12	30869556:30869610:30872012:30873849:30876192:30876248,	30872013	30873849	30873828	30873828	Frame_Shift_Del	A	-	p.C689fs
LIHC	TCGA-DD-A3A0-01	CAPRIN2	ENST00000308433.5,ENST00000454014.2,ENST00000298892.5,ENST00000548676.1,ENST00000417045.1,ENST00000537108.1,ENST00000251071.5,ENST00000395805.2,ENST00000433722.2,ENST00000537553.1	chr12	30877303:30877385:30878899:30879022:30881581:30882259,	30878900	30879022	30878948	30878948	Frame_Shift_Del	T	-	p.K619fs
LIHC	TCGA-DD-A3A0-01	CAPRIN2	ENST00000308433.5,ENST00000546129.1,ENST00000540436.1,ENST00000454014.2,ENST00000298892.5,ENST00000548676.1,ENST00000534897.1,ENST00000417045.1,ENST00000540584.1,ENST00000537108.1,ENST00000251071.5,ENST00000395805.2,ENST00000542550.1,ENST00000541765.1,ENST00000543380.1	chr12	30888109:30888140:30893953:30894040:30904004:30904058,	30893954	30894040	30893977	30893977	Frame_Shift_Del	T	-	p.T183fs
LIHC	TCGA-DD-A3A0-01	CAPRIN2	ENST00000308433.5,ENST00000540436.1,ENST00000454014.2,ENST00000298892.5,ENST00000417045.1,ENST00000540584.1,ENST00000537108.1,ENST00000251071.5,ENST00000395805.2,ENST00000542550.1	chr12	30893953:30894040:30904004:30904067:30906277:30906472,	30904005	30904067	30904034	30904034	Frame_Shift_Del	T	-	p.S152fs
LIHC	TCGA-DD-A3A0-01	TSPAN11	ENST00000546076.1	chr12	31079837:31079939:31106914:31107009:31116760:31116952,31079681:31079730:31106914:31107009:31116760:31116952,	31106915	31107009	31107008	31107008	Frame_Shift_Del	G	-	p.W28fs
LIHC	TCGA-DD-A3A0-01	DDX11	ENST00000536265.1,ENST00000407793.2,ENST00000251758.5,ENST00000350437.4,ENST00000542838.1,ENST00000536580.1,ENST00000435753.2,ENST00000542129.1,ENST00000228264.6,ENST00000539049.1,ENST00000539673.1,ENST00000545668.1	chr12	31245795:31245826:31246178:31246258:31247523:31247567,	31246179	31246258	31246185	31246185	Frame_Shift_Del	T	-	p.R432fs
LIHC	TCGA-DD-A3A0-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31605205	31605205	Frame_Shift_Del	T	-	p.K433fs
LIHC	TCGA-DD-A3A0-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31604873:31605410:31613127:31613315:31632522:31633189,	31613128	31613315	31613192	31613192	Frame_Shift_Del	G	-	p.P343fs
LIHC	TCGA-DD-A3A0-01	AMN1	ENST00000536761.1,ENST00000537960.1	chr12	31854932:31854941:31862226:31862359:31881924:31882055,31854932:31854941:31862226:31862359:31867815:31867885,	31862227	31862359	31862287	31862287	Frame_Shift_Del	T	-	p.K37fs
LIHC	TCGA-DD-A3A0-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32458630:32459056:32480394:32481489:32487449:32487601,	32480395	32481489	32480405	32480405	Frame_Shift_Del	A	-	p.E339fs
LIHC	TCGA-DD-A3A0-01	KIF21A	ENST00000544797.2,ENST00000361418.5,ENST00000541463.2,ENST00000552908.1,ENST00000395670.3,ENST00000361961.3	chr12	39751979:39752175:39756899:39757015:39760151:39760319,	39756900	39757015	39756913	39756913	Frame_Shift_Del	G	-	p.L336fs
LIHC	TCGA-DD-A3A0-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40706515:40706710:40707773:40707975:40709013:40709102,40704232:40704451:40707773:40707975:40709013:40709102,	40707774	40707975	40707960	40707960	Frame_Shift_Del	T	-	p.F1575fs
LIHC	TCGA-DD-A3A0-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40745340:40745535:40748100:40748294:40749916:40749989,	40748101	40748294	40748176	40748176	Frame_Shift_Del	G	-	p.G2218fs
LIHC	TCGA-DD-A3A0-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40745340:40745535:40748100:40748294:40749916:40749989,	40748101	40748294	40748221	40748221	Frame_Shift_Del	A	-	p.K2234fs
LIHC	TCGA-DD-A3A0-01	YAF2	ENST00000547351.1,ENST00000442791.3	chr12	42555550:42555567:42631400:42631526:42631956:42631982,42604349:42604421:42631400:42631526:42631956:42631982,	42631401	42631526	42631464	42631464	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-DD-A3A0-01	PPHLN1	ENST00000395568.2,ENST00000549190.1,ENST00000395580.3,ENST00000552761.1,ENST00000337898.6,ENST00000358314.7,ENST00000432191.2,ENST00000552202.1	chr12	42748962:42749024:42768664:42768876:42781257:42781324,42748962:42749024:42768664:42768876:42778741:42778798,	42768665	42768876	42768709	42768709	Frame_Shift_Del	A	-	p.H60fs
LIHC	TCGA-DD-A3A0-01	PPHLN1	ENST00000395568.2,ENST00000549190.1,ENST00000395580.3,ENST00000552761.1,ENST00000337898.6,ENST00000358314.7,ENST00000432191.2,ENST00000552202.1	chr12	42748962:42749024:42768664:42768876:42781257:42781324,42748962:42749024:42768664:42768876:42778741:42778798,	42768665	42768876	42768749	42768749	Frame_Shift_Del	T	-	p.T73fs
LIHC	TCGA-DD-A3A0-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148152	44148152	Frame_Shift_Del	T	-	p.K299fs
LIHC	TCGA-DD-A3A0-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148366	44148366	Frame_Shift_Del	T	-	p.N228fs
LIHC	TCGA-DD-A3A0-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46230371:46230438:46230523:46230774:46231103:46231200,	46230524	46230774	46230638	46230638	Frame_Shift_Del	T	-	p.L296fs
LIHC	TCGA-DD-A3A0-01	SCAF11	ENST00000369367.3,ENST00000547018.1,ENST00000419565.2	chr12	46328229:46328288:46339031:46339096:46342219:46342313,	46339032	46339096	46339057	46339057	Frame_Shift_Del	T	-	p.K146fs
LIHC	TCGA-DD-A3A0-01	SLC38A2	ENST00000256689.5,ENST00000547252.1,ENST00000549258.1,ENST00000548870.1	chr12	46758889:46758972:46760646:46760728:46760858:46760951,	46760647	46760728	46760671	46760671	Frame_Shift_Del	A	-	p.L180fs
LIHC	TCGA-DD-A3A0-01	RPAP3	ENST00000432584.3	chr12	48091379:48091502:48095246:48095387:48099734:48099769,	48095247	48095387	48095293	48095293	Frame_Shift_Del	T	-	p.N83fs
LIHC	TCGA-DD-A3A0-01	HDAC7	ENST00000459625.1	chr12	48183305:48183361:48183595:48185091:48185368:48185489,	48183596	48185091	48185047	48185047	Frame_Shift_Del	C	-	p.V660fs
LIHC	TCGA-DD-A3A0-01	HDAC7	ENST00000488927.1,ENST00000470668.1,ENST00000548080.1,ENST00000548938.1,ENST00000380610.4,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48183595:48183703:48185041:48185091:48185368:48185489,	48185042	48185091	48185047	48185047	Frame_Shift_Del	C	-	p.V660fs
LIHC	TCGA-DD-A3A0-01	HDAC7	ENST00000477203.2	chr12	48189369:48189550:48189997:48190081:48190799:48190925,	48189998	48190081	48190032	48190032	Frame_Shift_Del	G	-	p.P251fs
LIHC	TCGA-DD-A3A0-01	HDAC7	ENST00000470668.1,ENST00000430670.1,ENST00000354334.3	chr12	48189449:48189550:48189989:48190081:48190799:48190925,	48189990	48190081	48190032	48190032	Frame_Shift_Del	G	-	p.P251fs
LIHC	TCGA-DD-A3A0-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000359794.5,ENST00000546964.1,ENST00000340802.6,ENST00000312352.7	chr12	48529073:48529166:48531503:48531629:48533067:48533132,	48531504	48531629	48531538	48531538	Frame_Shift_Del	T	-	p.L396fs
LIHC	TCGA-DD-A3A0-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000546465.1,ENST00000359794.5,ENST00000546964.1,ENST00000552752.1,ENST00000340802.6,ENST00000312352.7,ENST00000395233.2,ENST00000551804.1	chr12	48535120:48535164:48535522:48535610:48535696:48535849,	48535523	48535610	48535605	48535605	Frame_Shift_Del	T	-	p.F570fs
LIHC	TCGA-DD-A3A0-01	KANSL2	ENST00000420613.2,ENST00000548701.1,ENST00000550347.1	chr12	49047671:49047958:49048723:49048843:49054148:49054402,	49048724	49048843	49048790	49048790	Frame_Shift_Del	A	-	p.F610fs
LIHC	TCGA-DD-A3A0-01	CACNB3	ENST00000301050.2,ENST00000547230.1,ENST00000550064.1,ENST00000540990.1,ENST00000536187.2,ENST00000551544.1	chr12	49218731:49218751:49218945:49219026:49219216:49219267,	49218946	49219026	49218958	49218958	Frame_Shift_Del	C	-	p.P170fs
LIHC	TCGA-DD-A3A0-01	DDX23	ENST00000549795.1,ENST00000308025.3	chr12	49225860:49225969:49226204:49226356:49227059:49227128,	49226205	49226356	49226328	49226328	Frame_Shift_Del	G	-	p.P611fs
LIHC	TCGA-DD-A3A0-01	DDX23	ENST00000547165.1	chr12	49230808:49230820:49231063:49231440:49231724:49231844,	49231064	49231440	49231151	49231151	Frame_Shift_Del	T	-	p.K260fs
LIHC	TCGA-DD-A3A0-01	CCDC65	ENST00000320516.4,ENST00000266984.5,ENST00000547861.1	chr12	49308186:49308356:49310752:49310891:49312057:49312255,	49310753	49310891	49310845	49310845	Frame_Shift_Del	A	-	p.E188fs
LIHC	TCGA-DD-A3A0-01	LMBR1L	ENST00000457164.2	chr12	49497532:49497596:49498230:49498334:49498528:49498668,49497483:49497596:49498230:49498334:49498501:49498668,	49498231	49498334	49498296	49498296	Frame_Shift_Del	G	-	p.L124fs
LIHC	TCGA-DD-A3A0-01	TROAP	ENST00000547923.1,ENST00000551245.1,ENST00000551192.1,ENST00000549891.1,ENST00000546735.1,ENST00000257909.3	chr12	49720991:49721113:49722709:49722838:49722943:49723027,	49722710	49722838	49722744	49722744	Frame_Shift_Del	C	-	p.A309fs
LIHC	TCGA-DD-A3A0-01	TROAP	ENST00000257909.3	chr12	49723645:49723774:49723927:49724726:49724996:49725190,	49723928	49724726	49724291	49724291	Frame_Shift_Del	C	-	p.P555fs
LIHC	TCGA-DD-A3A0-01	TROAP	ENST00000547923.1	chr12	49723639:49723774:49723927:49724356:49724443:49724726,	49723928	49724356	49724291	49724291	Frame_Shift_Del	C	-	p.P555fs
LIHC	TCGA-DD-A3A0-01	TROAP	ENST00000547923.1,ENST00000257909.3	chr12	49724443:49724726:49724996:49725190:49725355:49725453,	49724997	49725190	49725055	49725055	Frame_Shift_Del	A	-	p.L809fs
LIHC	TCGA-DD-A3A0-01	TROAP	ENST00000547923.1,ENST00000257909.3	chr12	49724443:49724726:49724996:49725190:49725355:49725453,	49724997	49725190	49725104	49725104	Frame_Shift_Del	T	-	p.F826fs
LIHC	TCGA-DD-A3A0-01	FAM186B	ENST00000533372.1,ENST00000544141.1	chr12	49976668:49976892:49982236:49982406:49992537:49992572,	49982237	49982406	49982305	49982305	Frame_Shift_Del	G	-	p.P732fs
LIHC	TCGA-DD-A3A0-01	FMNL3	ENST00000293590.5,ENST00000352151.5,ENST00000549137.1,ENST00000550488.1,ENST00000335154.5	chr12	50043473:50043708:50044458:50044661:50044950:50045075,	50044459	50044661	50044582	50044582	Frame_Shift_Del	T	-	p.N626fs
LIHC	TCGA-DD-A3A0-01	NCKAP5L	ENST00000335999.6,ENST00000433948.1	chr12	50186228:50186371:50186460:50186769:50187134:50187216,	50186461	50186769	50186540	50186540	Frame_Shift_Del	C	-	p.G1190fs
LIHC	TCGA-DD-A3A0-01	LIMA1	ENST00000552720.1,ENST00000552909.1,ENST00000552783.1,ENST00000552823.1,ENST00000341247.4,ENST00000394943.3	chr12	50589612:50589670:50594559:50594667:50598334:50598483,	50594560	50594667	50594577	50594577	Frame_Shift_Del	G	-	p.H17fs
LIHC	TCGA-DD-A3A0-01	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50615831	50615831	Frame_Shift_Del	A	-	p.F201fs
LIHC	TCGA-DD-A3A0-01	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50615946	50615946	Frame_Shift_Del	T	-	p.N163fs
LIHC	TCGA-DD-A3A0-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000347328.5,ENST00000520064.2,ENST00000293618.8,ENST00000518444.1	chr12	50856379:50856413:50860741:50860903:50867197:50867319,	50860742	50860903	50860890	50860890	Frame_Shift_Del	T	-	p.V511fs
LIHC	TCGA-DD-A3A0-01	DIP2B	ENST00000301180.5,ENST00000546732.1	chr12	51102230:51102345:51108177:51108379:51112491:51112601,	51108178	51108379	51108201	51108201	Frame_Shift_Del	G	-	p.V891fs
LIHC	TCGA-DD-A3A0-01	DIP2B	ENST00000301180.5,ENST00000546732.1	chr12	51102230:51102345:51108177:51108379:51112491:51112601,	51108178	51108379	51108330	51108330	Frame_Shift_Del	C	-	p.C934fs
LIHC	TCGA-DD-A3A0-01	CSRNP2	ENST00000228515.1	chr12	51461681:51461752:51467605:51467865:51470193:51470430,	51467606	51467865	51467826	51467826	Frame_Shift_Del	T	-	p.K64fs
LIHC	TCGA-DD-A3A0-01	POU6F1	ENST00000550824.1,ENST00000333640.10,ENST00000389243.4	chr12	51586172:51586254:51589752:51589956:51591552:51591568,51586172:51586254:51589752:51589956:51590581:51590710,	51589753	51589956	51589791	51589791	Frame_Shift_Del	G	-	p.R71fs
LIHC	TCGA-DD-A3A0-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685393	51685393	Frame_Shift_Del	G	-	p.P499fs
LIHC	TCGA-DD-A3A0-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685649	51685649	Frame_Shift_Del	G	-	p.P414fs
LIHC	TCGA-DD-A3A0-01	ACVRL1	ENST00000388922.4,ENST00000419526.2,ENST00000550683.1	chr12	52309819:52310017:52312768:52312899:52314542:52314853,	52312769	52312899	52312875	52312875	Frame_Shift_Del	C	-	p.I465fs
LIHC	TCGA-DD-A3A0-01	NR4A1	ENST00000394825.1	chr12	52435593:52435713:52448110:52448988:52449813:52449935,52445246:52445352:52448110:52448988:52449813:52449935,	52448111	52448988	52448480	52448480	Frame_Shift_Del	C	-	p.A177fs
LIHC	TCGA-DD-A3A0-01	KRT7	ENST00000331817.5,ENST00000546856.1	chr12	52632502:52632559:52635255:52635420:52636795:52636921,	52635256	52635420	52635322	52635322	Frame_Shift_Del	T	-	p.S254fs
LIHC	TCGA-DD-A3A0-01	KRT7	ENST00000331817.5,ENST00000546856.1	chr12	52632502:52632559:52635255:52635420:52636795:52636921,	52635256	52635420	52635401	52635401	Frame_Shift_Del	A	-	p.E280fs
LIHC	TCGA-DD-A3A0-01	CSAD	ENST00000424845.1	chr12	53565187:53565225:53565661:53565772:53567128:53567158,	53565662	53565772	53565751	53565751	Frame_Shift_Del	G	-	p.P149fs
LIHC	TCGA-DD-A3A0-01	CSAD	ENST00000483632.1	chr12	53564206:53564286:53565665:53565772:53566129:53566155,	53565666	53565772	53565751	53565751	Frame_Shift_Del	G	-	p.P149fs
LIHC	TCGA-DD-A3A0-01	RARG	ENST00000425354.2,ENST00000394426.1	chr12	53609429:53609578:53621145:53621471:53624952:53625016,	53621146	53621471	53621165	53621165	Frame_Shift_Del	G	-	p.P55fs
LIHC	TCGA-DD-A3A0-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53679784	53679784	Frame_Shift_Del	C	-	p.V1088fs
LIHC	TCGA-DD-A3A0-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53679871	53679871	Frame_Shift_Del	C	-	p.G1117fs
LIHC	TCGA-DD-A3A0-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53679908	53679908	Frame_Shift_Del	A	-	p.K1130fs
LIHC	TCGA-DD-A3A0-01	PCBP2	ENST00000359462.5,ENST00000546652.2,ENST00000550520.2,ENST00000455667.3,ENST00000546463.1,ENST00000447282.1,ENST00000541275.1,ENST00000551104.1,ENST00000359282.5,ENST00000437231.1,ENST00000552296.2,ENST00000439930.3,ENST00000552819.1,ENST00000549863.1,ENST00000562264.1,ENST00000603815.1,ENST00000548933.1	chr12	53849244:53849277:53849668:53849785:53853055:53853187,	53849669	53849785	53849756	53849756	Frame_Shift_Del	T	-	p.F72fs
LIHC	TCGA-DD-A3A0-01	COPZ1	ENST00000551962.1	chr12	54739243:54739299:54741550:54741628:54741783:54741823,54737008:54737100:54741550:54741628:54741783:54741823,	54741551	54741628	54741562	54741562	Frame_Shift_Del	A	-	p.E110fs
LIHC	TCGA-DD-A3A0-01	ZNF385A	ENST00000552382.1	chr12	54767756:54767919:54769627:54769738:54778211:54778244,54767756:54767919:54769627:54769738:54772849:54772973,	54769628	54769738	54769695	54769695	Frame_Shift_Del	C	-	p.G44fs
LIHC	TCGA-DD-A3A0-01	ITGA5	ENST00000552387.1,ENST00000293379.4,ENST00000552564.1,ENST00000552431.1	chr12	54791149:54791271:54792380:54792482:54793428:54793542,	54792381	54792482	54792465	54792465	Frame_Shift_Del	A	-	p.F953fs
LIHC	TCGA-DD-A3A0-01	NCKAP1L	ENST00000548221.1,ENST00000293373.6,ENST00000545638.2	chr12	54920311:54920530:54922030:54922161:54925043:54925141,	54922031	54922161	54922034	54922034	Frame_Shift_Del	C	-	p.Y793fs
LIHC	TCGA-DD-A3A0-01	TESPA1	ENST00000525978.1,ENST00000449076.1,ENST00000532757.1,ENST00000316577.8,ENST00000532804.1,ENST00000526532.1,ENST00000524622.1,ENST00000524923.1,ENST00000533446.1,ENST00000531122.1	chr12	55357642:55357734:55359836:55359935:55360171:55360208,	55359837	55359935	55359882	55359882	Frame_Shift_Del	A	-	p.L134fs
LIHC	TCGA-DD-A3A0-01	CD63	ENST00000420846.3,ENST00000550050.1,ENST00000257857.4	chr12	56120934:56121123:56122059:56122136:56123065:56123177,56120934:56121123:56122059:56122136:56122736:56122784,	56122060	56122136	56122102	56122102	Frame_Shift_Del	T	-	p.K8fs
LIHC	TCGA-DD-A3A0-01	MMP19	ENST00000547685.1,ENST00000552872.1	chr12	56231626:56231791:56232283:56232518:56233279:56233525,	56232284	56232518	56232455	56232455	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A3A0-01	MMP19	ENST00000548629.1,ENST00000322569.4	chr12	56231626:56231791:56232389:56232518:56233279:56233525,	56232390	56232518	56232455	56232455	Frame_Shift_Del	G	-	p.P277fs
LIHC	TCGA-DD-A3A0-01	DGKA	ENST00000549079.2,ENST00000547358.1,ENST00000553084.1,ENST00000552478.1,ENST00000331886.5,ENST00000555218.1,ENST00000394147.1,ENST00000551156.1,ENST00000552335.2	chr12	56333270:56333313:56333865:56333954:56334097:56334217,	56333866	56333954	56333943	56333943	Frame_Shift_Del	A	-	p.K263fs
LIHC	TCGA-DD-A3A0-01	DGKA	ENST00000551296.1	chr12	56333270:56333313:56333865:56333952:56334097:56334217,	56333866	56333952	56333943	56333943	Frame_Shift_Del	A	-	p.K263fs
LIHC	TCGA-DD-A3A0-01	PMEL	ENST00000536427.1,ENST00000548803.1,ENST00000549404.1	chr12	56349896:56350003:56350732:56350843:56350969:56350976,	56350733	56350843	56350757	56350757	Frame_Shift_Del	T	-	p.I444fs
LIHC	TCGA-DD-A3A0-01	PMEL	ENST00000449260.2,ENST00000552882.1,ENST00000548747.1,ENST00000360714.4,ENST00000539511.1,ENST00000546543.1,ENST00000536427.1,ENST00000550464.1,ENST00000549404.1,ENST00000556802.1,ENST00000548493.1	chr12	56351264:56351455:56351706:56351868:56352256:56352387,	56351707	56351868	56351789	56351789	Frame_Shift_Del	G	-	p.T183fs
LIHC	TCGA-DD-A3A0-01	ERBB3	ENST00000549061.1	chr12	56473640:56473718:56474128:56474166:56477534:56477686,	56474129	56474166	56474137	56474137	Frame_Shift_Del	G	-	p.R18fs
LIHC	TCGA-DD-A3A0-01	ERBB3	ENST00000546884.1,ENST00000551085.1,ENST00000267101.3,ENST00000551242.1,ENST00000411731.2,ENST00000549061.1,ENST00000549282.1	chr12	56474128:56474166:56477534:56477686:56478778:56478923,	56477535	56477686	56477676	56477676	Frame_Shift_Del	C	-	p.S75fs
LIHC	TCGA-DD-A3A0-01	ERBB3	ENST00000415288.2,ENST00000551085.1,ENST00000267101.3,ENST00000551242.1	chr12	56481360:56481426:56481578:56481697:56481804:56481848,	56481579	56481697	56481631	56481631	Frame_Shift_Del	C	-	p.N222fs
LIHC	TCGA-DD-A3A0-01	ESYT1	ENST00000394048.5,ENST00000541590.1,ENST00000267113.4,ENST00000547667.1	chr12	56531125:56531157:56531282:56531459:56531615:56531698,	56531283	56531459	56531342	56531342	Frame_Shift_Del	G	-	p.L666fs
LIHC	TCGA-DD-A3A0-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56574760:56574885:56575265:56575381:56575487:56575619,	56575266	56575381	56575268	56575268	Frame_Shift_Del	T	-	p.K318fs
LIHC	TCGA-DD-A3A0-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56574760:56574885:56575265:56575381:56575487:56575619,	56575266	56575381	56575313	56575313	Frame_Shift_Del	G	-	p.P303fs
LIHC	TCGA-DD-A3A0-01	SLC39A5	ENST00000419753.1	chr12	56623866:56623906:56624987:56625345:56626472:56626556,	56624988	56625345	56625125	56625125	Frame_Shift_Del	G	-	p.G24fs
LIHC	TCGA-DD-A3A0-01	SLC39A5	ENST00000436633.1	chr12	56624987:56625073:56625160:56625345:56626472:56626556,	56625161	56625345	56625253	56625253	Frame_Shift_Del	G	-	p.L65fs
LIHC	TCGA-DD-A3A0-01	SLC39A5	ENST00000481103.1	chr12	56623866:56623906:56625249:56625345:56626472:56626556,	56625250	56625345	56625253	56625253	Frame_Shift_Del	G	-	p.L65fs
LIHC	TCGA-DD-A3A0-01	SLC39A5	ENST00000419753.1	chr12	56623866:56623906:56624987:56625345:56626472:56626556,	56624988	56625345	56625253	56625253	Frame_Shift_Del	G	-	p.L65fs
LIHC	TCGA-DD-A3A0-01	ANKRD52	ENST00000267116.7	chr12	56641470:56641558:56641806:56642008:56642278:56642350,	56641807	56642008	56641912	56641912	Frame_Shift_Del	C	-	p.A625fs
LIHC	TCGA-DD-A3A0-01	ANKRD52	ENST00000267116.7	chr12	56647071:56647186:56647505:56647584:56647850:56648063,	56647506	56647584	56647569	56647569	Frame_Shift_Del	T	-	p.S308fs
LIHC	TCGA-DD-A3A0-01	CS	ENST00000550734.1,ENST00000548849.1,ENST00000551253.1,ENST00000551936.1,ENST00000351328.3,ENST00000549221.1,ENST00000549143.1,ENST00000542324.2,ENST00000548567.1,ENST00000546621.1	chr12	56669779:56669927:56676203:56676392:56676643:56676691,56669947:56669979:56676203:56676392:56676643:56676691,	56676204	56676392	56676300	56676300	Frame_Shift_Del	G	-	p.P98fs
LIHC	TCGA-DD-A3A0-01	PAN2	ENST00000440411.3,ENST00000551359.1,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1,ENST00000547226.1	chr12	56711384:56711427:56712020:56712218:56713091:56713271,56711384:56711427:56712020:56712218:56712871:56712965,	56712021	56712218	56712128	56712128	Frame_Shift_Del	T	-	p.N1156fs
LIHC	TCGA-DD-A3A0-01	PAN2	ENST00000440411.3,ENST00000551359.1,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1,ENST00000547226.1	chr12	56711384:56711427:56712020:56712218:56713091:56713271,56711384:56711427:56712020:56712218:56712871:56712965,	56712021	56712218	56712201	56712201	Frame_Shift_Del	C	-	p.E1132fs
LIHC	TCGA-DD-A3A0-01	PAN2	ENST00000547994.1,ENST00000440411.3,ENST00000551359.1,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1	chr12	56720096:56720193:56720400:56720743:56721147:56721415,	56720401	56720743	56720432	56720432	Frame_Shift_Del	A	-	p.W411fs
LIHC	TCGA-DD-A3A0-01	STAT2	ENST00000314128.4,ENST00000418572.2,ENST00000557235.1	chr12	56743372:56743420:56743880:56743974:56744195:56744216,	56743881	56743974	56743906	56743906	Frame_Shift_Del	C	-	p.G395fs
LIHC	TCGA-DD-A3A0-01	TIMELESS	ENST00000553532.1,ENST00000229201.4,ENST00000554616.1	chr12	56814746:56814918:56815134:56815277:56815510:56815593,	56815135	56815277	56815154	56815154	Frame_Shift_Del	T	-	p.K949fs
LIHC	TCGA-DD-A3A0-01	TIMELESS	ENST00000553532.1,ENST00000557589.1,ENST00000229201.4	chr12	56815889:56815975:56816630:56816776:56817057:56817259,	56816631	56816776	56816735	56816735	Frame_Shift_Del	A	-	p.F777fs
LIHC	TCGA-DD-A3A0-01	BAZ2A	ENST00000551812.1,ENST00000549884.1	chr12	57007736:57007922:57008797:57009391:57011178:57011316,	57008798	57009391	57008974	57008974	Frame_Shift_Del	A	-	p.F187fs
LIHC	TCGA-DD-A3A0-01	BAZ2A	ENST00000551812.1,ENST00000549884.1	chr12	57007736:57007922:57008797:57009391:57011178:57011316,	57008798	57009391	57008983	57008983	Frame_Shift_Del	G	-	p.P184fs
LIHC	TCGA-DD-A3A0-01	NACA	ENST00000550952.1	chr12	57108418:57108471:57109654:57109990:57113320:57113380,	57109655	57109990	57109720	57109720	Frame_Shift_Del	G	-	p.P1865fs
LIHC	TCGA-DD-A3A0-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57109720	57109720	Frame_Shift_Del	G	-	p.P1865fs
LIHC	TCGA-DD-A3A0-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57111453	57111453	Frame_Shift_Del	G	-	p.P1287fs
LIHC	TCGA-DD-A3A0-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112499	57112499	Frame_Shift_Del	C	-	p.A939fs
LIHC	TCGA-DD-A3A0-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112731	57112731	Frame_Shift_Del	G	-	p.P861fs
LIHC	TCGA-DD-A3A0-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114705	57114705	Frame_Shift_Del	G	-	p.P203fs
LIHC	TCGA-DD-A3A0-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114705	57114705	Frame_Shift_Del	G	-	p.P203fs
LIHC	TCGA-DD-A3A0-01	HSD17B6	ENST00000555805.1,ENST00000554643.1,ENST00000554150.1,ENST00000322165.1	chr12	57157107:57157198:57167617:57167949:57175757:57175808,	57167618	57167949	57167741	57167741	Frame_Shift_Del	G	-	p.T35fs
LIHC	TCGA-DD-A3A0-01	NAB2	ENST00000342556.6,ENST00000300131.3	chr12	57485694:57485781:57486230:57486364:57486699:57486751,	57486231	57486364	57486313	57486313	Frame_Shift_Del	C	-	p.S347fs
LIHC	TCGA-DD-A3A0-01	STAT6	ENST00000554764.1,ENST00000543873.2,ENST00000300134.3,ENST00000454075.3,ENST00000538913.2,ENST00000555318.1,ENST00000537215.2,ENST00000556155.1	chr12	57492797:57492861:57493076:57493223:57493549:57493577,	57493077	57493223	57493127	57493127	Frame_Shift_Del	T	-	p.N614fs
LIHC	TCGA-DD-A3A0-01	STAT6	ENST00000554764.1,ENST00000543873.2,ENST00000300134.3,ENST00000553533.1,ENST00000454075.3,ENST00000538913.2,ENST00000537215.2,ENST00000556155.1	chr12	57496611:57496704:57498246:57498369:57498508:57498596,	57498247	57498369	57498255	57498255	Frame_Shift_Del	G	-	p.Q402fs
LIHC	TCGA-DD-A3A0-01	LRP1	ENST00000243077.3	chr12	57566950:57567133:57567562:57567763:57569242:57569488,	57567563	57567763	57567595	57567595	Frame_Shift_Del	G	-	p.G1127fs
LIHC	TCGA-DD-A3A0-01	NDUFA4L2	ENST00000393825.1,ENST00000554503.1	chr12	57628693:57629402:57629531:57629592:57630375:57630464,	57629532	57629592	57629565	57629565	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-DD-A3A0-01	STAC3	ENST00000332782.2,ENST00000554003.1,ENST00000554578.1,ENST00000546246.2	chr12	57638698:57638748:57638927:57638994:57640586:57640684,	57638928	57638994	57638934	57638934	Frame_Shift_Del	G	-	p.Q222fs
LIHC	TCGA-DD-A3A0-01	R3HDM2	ENST00000402412.1,ENST00000347140.3	chr12	57696958:57697000:57704046:57704246:57789531:57789601,	57704047	57704246	57704095	57704095	Frame_Shift_Del	T	-	p.E40fs
LIHC	TCGA-DD-A3A0-01	R3HDM2	ENST00000402412.1,ENST00000347140.3	chr12	57696958:57697000:57704046:57704246:57789531:57789601,	57704047	57704246	57704152	57704152	Frame_Shift_Del	T	-	p.K20fs
LIHC	TCGA-DD-A3A0-01	MARS	ENST00000549074.1	chr12	57881867:57881982:57882801:57882892:57883989:57883999,	57882802	57882892	57882851	57882851	Frame_Shift_Del	G	-	p.L53fs
LIHC	TCGA-DD-A3A0-01	MARS	ENST00000548674.1,ENST00000315473.5,ENST00000545888.2	chr12	57883049:57883128:57883206:57883341:57883678:57883754,57883049:57883128:57883206:57883341:57883989:57883999,	57883207	57883341	57883254	57883254	Frame_Shift_Del	G	-	p.K109fs
LIHC	TCGA-DD-A3A0-01	MARS	ENST00000550449.1	chr12	57882801:57882892:57883049:57883341:57883678:57883754,	57883050	57883341	57883254	57883254	Frame_Shift_Del	G	-	p.K109fs
LIHC	TCGA-DD-A3A0-01	MARS	ENST00000547501.1	chr12	57883049:57883128:57883237:57883341:57883678:57883754,	57883238	57883341	57883254	57883254	Frame_Shift_Del	G	-	p.K109fs
LIHC	TCGA-DD-A3A0-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919368	57919368	Frame_Shift_Del	G	-	p.R206fs
LIHC	TCGA-DD-A3A0-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57920005	57920005	Frame_Shift_Del	C	-	p.L418fs
LIHC	TCGA-DD-A3A0-01	DCTN2	ENST00000550201.1,ENST00000547480.1,ENST00000547345.1,ENST00000546670.1	chr12	57929531:57929628:57939810:57939879:57940810:57940903,	57939811	57939879	57939858	57939858	Frame_Shift_Del	A	-	p.Y20fs
LIHC	TCGA-DD-A3A0-01	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58001150	58001150	Frame_Shift_Del	G	-	p.L168fs
LIHC	TCGA-DD-A3A0-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58001150	58001150	Frame_Shift_Del	G	-	p.L168fs
LIHC	TCGA-DD-A3A0-01	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58001393	58001393	Frame_Shift_Del	G	-	p.Q249fs
LIHC	TCGA-DD-A3A0-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58001393	58001393	Frame_Shift_Del	G	-	p.Q249fs
LIHC	TCGA-DD-A3A0-01	ARHGEF25	ENST00000333972.7,ENST00000286494.4	chr12	58007476:58007543:58007798:58007902:58008113:58008183,	58007799	58007902	58007825	58007825	Frame_Shift_Del	G	-	p.Q193fs
LIHC	TCGA-DD-A3A0-01	AVIL	ENST00000257861.3,ENST00000549994.1,ENST00000548843.1,ENST00000537081.1,ENST00000549851.1	chr12	58204801:58204910:58207009:58207206:58207934:58208009,	58207010	58207206	58207152	58207152	Frame_Shift_Del	C	-	p.D59fs
LIHC	TCGA-DD-A3A0-01	DPY19L2	ENST00000306389.7	chr12	64015017:64015117:64020248:64020306:64038182:64038276,	64020249	64020306	64020262	64020262	Frame_Shift_Del	A	-	p.F283fs
LIHC	TCGA-DD-A3A0-01	C12orf66	ENST00000398055.3	chr12	64587626:64588438:64609457:64609743:64615782:64616043,	64609458	64609743	64609545	64609545	Frame_Shift_Del	T	-	p.K145fs
LIHC	TCGA-DD-A3A0-01	XPOT	ENST00000332707.5	chr12	64814132:64814301:64815014:64815251:64816784:64816823,	64815015	64815251	64815219	64815219	Frame_Shift_Del	T	-	p.F350fs
LIHC	TCGA-DD-A3A0-01	XPOT	ENST00000332707.5	chr12	64828286:64828403:64828573:64828689:64829406:64829454,	64828574	64828689	64828679	64828679	Frame_Shift_Del	A	-	p.Q892fs
LIHC	TCGA-DD-A3A0-01	TBK1	ENST00000331710.5	chr12	64879705:64879797:64882266:64882368:64883820:64883899,	64882267	64882368	64882345	64882345	Frame_Shift_Del	A	-	p.R473fs
LIHC	TCGA-DD-A3A0-01	RASSF3	ENST00000542104.1,ENST00000336061.2	chr12	65078566:65078674:65081995:65082233:65085249:65085359,	65081996	65082233	65082067	65082067	Frame_Shift_Del	A	-	p.P97fs
LIHC	TCGA-DD-A3A0-01	GNS	ENST00000541781.1,ENST00000258145.3,ENST00000418919.2,ENST00000543646.1,ENST00000542058.1	chr12	65116785:65116893:65122735:65122837:65130783:65130882,	65122736	65122837	65122800	65122800	Frame_Shift_Del	A	-	p.L379fs
LIHC	TCGA-DD-A3A0-01	IRAK3	ENST00000261233.4,ENST00000457197.2	chr12	66603926:66603981:66605225:66605377:66610950:66611015,	66605226	66605377	66605316	66605316	Frame_Shift_Del	T	-	p.I176fs
LIHC	TCGA-DD-A3A0-01	MDM1	ENST00000303145.7,ENST00000540418.1	chr12	68708795:68709045:68709857:68710033:68715126:68715226,	68709858	68710033	68709973	68709973	Frame_Shift_Del	A	-	p.S356fs
LIHC	TCGA-DD-A3A0-01	MDM1	ENST00000303145.7,ENST00000540418.1	chr12	68709857:68710033:68715126:68715226:68715304:68715408,	68715127	68715226	68715162	68715162	Frame_Shift_Del	C	-	p.A324fs
LIHC	TCGA-DD-A3A0-01	RAP1B	ENST00000540209.1	chr12	69042485:69042561:69044179:69044248:69047891:69047962,	69044180	69044248	69044211	69044211	Frame_Shift_Del	A	-	p.E30fs
LIHC	TCGA-DD-A3A0-01	RAP1B	ENST00000250559.9,ENST00000540781.1,ENST00000453560.2,ENST00000463493.1,ENST00000537460.1,ENST00000425247.2,ENST00000538980.1,ENST00000541216.1,ENST00000545270.1,ENST00000544639.1,ENST00000393436.5,ENST00000341355.5	chr12	69045798:69045831:69047891:69048032:69050085:69050128,	69047892	69048032	69047925	69047925	Frame_Shift_Del	A	-	p.K73fs
LIHC	TCGA-DD-A3A0-01	RAP1B	ENST00000250559.9,ENST00000540209.1,ENST00000539091.1,ENST00000543393.1,ENST00000463493.1,ENST00000537460.1,ENST00000378985.3,ENST00000538980.1,ENST00000535492.1,ENST00000450214.2,ENST00000393436.5,ENST00000341355.5	chr12	69047904:69048032:69050085:69050229:69050880:69050919,	69050086	69050229	69050211	69050211	Frame_Shift_Del	A	-	p.S150fs
LIHC	TCGA-DD-A3A0-01	NUP107	ENST00000535718.1,ENST00000378905.2	chr12	69083312:69083399:69084410:69084526:69090598:69090690,	69084411	69084526	69084414	69084414	Frame_Shift_Del	C	-	p.T64fs
LIHC	TCGA-DD-A3A0-01	MDM2	ENST00000350057.5,ENST00000462284.1,ENST00000539479.1,ENST00000393415.3,ENST00000311420.9,ENST00000393417.3	chr12	69207381:69207408:69222550:69222711:69229608:69229623,69218334:69218431:69222550:69222711:69229608:69229623,	69222551	69222711	69222617	69222617	Frame_Shift_Del	T	-	p.L197fs
LIHC	TCGA-DD-A3A0-01	BEST3	ENST00000548658.1,ENST00000331471.4,ENST00000330891.5,ENST00000393365.1	chr12	70088149:70088244:70091426:70091593:70092984:70093065,	70091427	70091593	70091462	70091462	Frame_Shift_Del	A	-	p.F39fs
LIHC	TCGA-DD-A3A0-01	CNOT2	ENST00000552915.1	chr12	70713077:70713144:70723202:70723350:70726546:70726586,	70723203	70723350	70723307	70723307	Frame_Shift_Del	G	-	p.G115fs
LIHC	TCGA-DD-A3A0-01	PTPRB	ENST00000550358.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70938336:70938443:70946556:70946800:70948939:70949089,	70946557	70946800	70946595	70946595	Frame_Shift_Del	T	-	p.K1783fs
LIHC	TCGA-DD-A3A0-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000538174.2	chr12	70983743:70984013:70986061:70986325:70988246:70988504,	70986062	70986325	70986267	70986267	Frame_Shift_Del	T	-	p.K525fs
LIHC	TCGA-DD-A3A0-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038706	72038706	Frame_Shift_Del	T	-	p.K410fs
LIHC	TCGA-DD-A3A0-01	TBC1D15	ENST00000393309.3,ENST00000474468.1,ENST00000549402.1,ENST00000462788.2	chr12	72266708:72266783:72274248:72274387:72278590:72278681,72266708:72266783:72274248:72274387:72287001:72287086,	72274249	72274387	72274337	72274337	Frame_Shift_Del	G	-	p.W98fs
LIHC	TCGA-DD-A3A0-01	CAPS2	ENST00000328705.3,ENST00000393284.3,ENST00000409445.3	chr12	75692466:75692560:75692650:75692746:75693616:75693691,	75692651	75692746	75692654	75692654	Frame_Shift_Del	T	-	p.N103fs
LIHC	TCGA-DD-A3A0-01	CAPS2	ENST00000328705.3,ENST00000393284.3,ENST00000409445.3	chr12	75692466:75692560:75692650:75692746:75693616:75693691,	75692651	75692746	75692705	75692705	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-DD-A3A0-01	KRR1	ENST00000229214.4	chr12	75895702:75895780:75897683:75897854:75898977:75899034,	75897684	75897854	75897787	75897787	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-DD-A3A0-01	KRR1	ENST00000438169.2,ENST00000229214.4	chr12	75898977:75899034:75900095:75900179:75900263:75900389,	75900096	75900179	75900111	75900111	Frame_Shift_Del	A	-	p.F196fs
LIHC	TCGA-DD-A3A0-01	NAP1L1	ENST00000552147.1,ENST00000542344.1	chr12	76448827:76448870:76449812:76449938:76453577:76453658,	76449813	76449938	76449900	76449900	Frame_Shift_Del	T	-	p.K157fs
LIHC	TCGA-DD-A3A0-01	NAP1L1	ENST00000535020.2,ENST00000547529.2,ENST00000547773.1,ENST00000393263.3,ENST00000544816.1,ENST00000549596.1,ENST00000548273.1,ENST00000548044.1,ENST00000551992.1,ENST00000261182.8,ENST00000552056.1	chr12	76448827:76448870:76449812:76449941:76453917:76454059,76448827:76448870:76449812:76449941:76453577:76453658,	76449813	76449941	76449900	76449900	Frame_Shift_Del	T	-	p.K157fs
LIHC	TCGA-DD-A3A0-01	ZDHHC17	ENST00000334822.5,ENST00000550163.1,ENST00000549682.1,ENST00000551407.1,ENST00000546778.1,ENST00000359019.4,ENST00000426126.2,ENST00000552453.1,ENST00000547620.1,ENST00000549944.1	chr12	77199096:77199219:77202822:77202900:77203492:77203530,	77202823	77202900	77202863	77202863	Frame_Shift_Del	G	-	p.G121fs
LIHC	TCGA-DD-A3A0-01	ZDHHC17	ENST00000334822.5,ENST00000550876.1,ENST00000426126.2,ENST00000552453.1	chr12	77209677:77209799:77216185:77216311:77220687:77220694,	77216186	77216311	77216218	77216218	Frame_Shift_Del	A	-	p.R268fs
LIHC	TCGA-DD-A3A0-01	CSRP2	ENST00000547435.1,ENST00000311083.5,ENST00000546966.1	chr12	77254063:77254193:77256955:77257124:77259928:77260041,	77256956	77257124	77257046	77257046	Frame_Shift_Del	T	-	p.K65fs
LIHC	TCGA-DD-A3A0-01	E2F7	ENST00000322886.7,ENST00000416496.2,ENST00000550669.1	chr12	77427785:77427822:77436844:77436979:77438416:77438575,	77436845	77436979	77436976	77436976	Frame_Shift_Del	T	-	p.K331fs
LIHC	TCGA-DD-A3A0-01	OTOGL	ENST00000546620.1,ENST00000551340.1,ENST00000547103.1,ENST00000550182.1,ENST00000298820.3,ENST00000458043.2	chr12	80761340:80761519:80761984:80762089:80764349:80764469,	80761985	80762089	80762036	80762036	Frame_Shift_Del	A	-	p.K2179fs
LIHC	TCGA-DD-A3A0-01	PTPRQ	ENST00000266688.5	chr12	80935333:80935624:80935867:80936143:80936508:80936660,	80935868	80936143	80935896	80935896	Frame_Shift_Del	T	-	p.T1154fs
LIHC	TCGA-DD-A3A0-01	PTPRQ	ENST00000266688.5	chr12	80940334:80940476:80943243:80943513:80981907:80982231,	80943244	80943513	80943318	80943318	Frame_Shift_Del	A	-	p.K1361fs
LIHC	TCGA-DD-A3A0-01	ACSS3	ENST00000548058.1	chr12	81470989:81472210:81503338:81503483:81528594:81528742,	81503339	81503483	81503362	81503362	Frame_Shift_Del	T	-	p.I112fs
LIHC	TCGA-DD-A3A0-01	METTL25	ENST00000248306.3,ENST00000547357.1	chr12	82783594:82783701:82792573:82793173:82796761:82796909,	82792574	82793173	82792612	82792612	Frame_Shift_Del	T	-	p.S190fs
LIHC	TCGA-DD-A3A0-01	METTL25	ENST00000248306.3,ENST00000547357.1	chr12	82783594:82783701:82792573:82793173:82796761:82796909,	82792574	82793173	82792976	82792976	Frame_Shift_Del	T	-	p.F312fs
LIHC	TCGA-DD-A3A0-01	TMTC2	ENST00000321196.3,ENST00000551915.1,ENST00000549919.1,ENST00000548305.1	chr12	83250788:83251359:83289596:83290425:83324209:83324324,	83289597	83290425	83290074	83290074	Frame_Shift_Del	A	-	p.K372fs
LIHC	TCGA-DD-A3A0-01	TMTC2	ENST00000321196.3,ENST00000551915.1,ENST00000549919.1,ENST00000548305.1	chr12	83250788:83251359:83289596:83290425:83324209:83324324,	83289597	83290425	83290333	83290333	Frame_Shift_Del	T	-	p.V458fs
LIHC	TCGA-DD-A3A0-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449460	85449460	Frame_Shift_Del	T	-	p.F297fs
LIHC	TCGA-DD-A3A0-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449506	85449506	Frame_Shift_Del	A	-	p.E312fs
LIHC	TCGA-DD-A3A0-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450312	85450312	Frame_Shift_Del	A	-	p.K582fs
LIHC	TCGA-DD-A3A0-01	C12orf29	ENST00000552803.1,ENST00000356891.3	chr12	88429818:88429850:88433924:88434042:88436601:88436697,88429386:88429515:88433924:88434042:88436601:88436697,	88433925	88434042	88434001	88434001	Frame_Shift_Del	A	-	p.E56fs
LIHC	TCGA-DD-A3A0-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454712	88454712	Frame_Shift_Del	T	-	p.K2139fs
LIHC	TCGA-DD-A3A0-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454732	88454732	Frame_Shift_Del	T	-	p.T2133fs
LIHC	TCGA-DD-A3A0-01	CEP290	ENST00000309041.7,ENST00000552810.1,ENST00000547926.2	chr12	88508874:88508959:88510809:88510922:88512259:88512347,	88510810	88510922	88510832	88510832	Frame_Shift_Del	T	-	p.N601fs
LIHC	TCGA-DD-A3A0-01	DCN	ENST00000549513.1,ENST00000052754.5,ENST00000393155.1,ENST00000550563.1,ENST00000552145.1,ENST00000552962.1,ENST00000547937.1	chr12	91540012:91540029:91558381:91558494:91572118:91572178,91552252:91552286:91558381:91558494:91572118:91572329,	91558382	91558494	91558429	91558429	Frame_Shift_Del	T	-	p.I93fs
LIHC	TCGA-DD-A3A0-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93196440:93196510:93202792:93202932:93205054:93205210,	93202793	93202932	93202801	93202801	Frame_Shift_Del	C	-	p.E777fs
LIHC	TCGA-DD-A3A0-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93221687:93221837:93226287:93226626:93236240:93236357,	93226288	93226626	93226544	93226544	Frame_Shift_Del	T	-	p.K333fs
LIHC	TCGA-DD-A3A0-01	PLXNC1	ENST00000545312.1,ENST00000258526.4,ENST00000547057.1	chr12	94691091:94691199:94692407:94692571:94694685:94694833,	94692408	94692571	94692430	94692430	Frame_Shift_Del	A	-	p.E1366fs
LIHC	TCGA-DD-A3A0-01	NDUFA12	ENST00000327772.2	chr12	95365253:95365396:95387945:95388033:95391083:95391186,95365253:95365396:95387945:95388033:95396514:95396597,	95387946	95388033	95387988	95387988	Frame_Shift_Del	T	-	p.N72fs
LIHC	TCGA-DD-A3A0-01	FGD6	ENST00000551521.1,ENST00000549499.1,ENST00000546711.1,ENST00000343958.4,ENST00000451107.3	chr12	95500729:95500813:95501338:95501407:95502123:95502195,	95501339	95501407	95501402	95501402	Frame_Shift_Del	A	-	p.F1090fs
LIHC	TCGA-DD-A3A0-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603053	95603053	Frame_Shift_Del	C	-	p.G669fs
LIHC	TCGA-DD-A3A0-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603064	95603064	Frame_Shift_Del	C	-	p.E666fs
LIHC	TCGA-DD-A3A0-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603118	95603118	Frame_Shift_Del	A	-	p.W648fs
LIHC	TCGA-DD-A3A0-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603525	95603525	Frame_Shift_Del	T	-	p.K512fs
LIHC	TCGA-DD-A3A0-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95604478	95604478	Frame_Shift_Del	A	-	p.F194fs
LIHC	TCGA-DD-A3A0-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95604597	95604597	Frame_Shift_Del	T	-	p.T155fs
LIHC	TCGA-DD-A3A0-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4,ENST00000553059.1	chr12	96107074:96107116:96131643:96131922:96180716:96181246,	96131644	96131922	96131803	96131803	Frame_Shift_Del	G	-	p.P235fs
LIHC	TCGA-DD-A3A0-01	CCDC38	ENST00000344280.3	chr12	96284609:96284708:96288766:96288924:96292162:96292243,	96288767	96288924	96288860	96288860	Frame_Shift_Del	T	-	p.M227fs
LIHC	TCGA-DD-A3A0-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292465	96292465	Frame_Shift_Del	T	-	p.K138fs
LIHC	TCGA-DD-A3A0-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96640748	96640748	Frame_Shift_Del	T	-	p.F80fs
LIHC	TCGA-DD-A3A0-01	CDK17	ENST00000548734.1,ENST00000543119.2,ENST00000551816.1,ENST00000261211.3,ENST00000552496.1	chr12	96707187:96707232:96717725:96717890:96793763:96793852,96707187:96707232:96717725:96717890:96728496:96728643,	96717726	96717890	96717815	96717815	Frame_Shift_Del	A	-	p.F65fs
LIHC	TCGA-DD-A3A0-01	NEDD1	ENST00000555114.1	chr12	97301479:97301634:97313762:97313903:97328753:97328758,	97313763	97313903	97313882	97313882	Frame_Shift_Del	T	-	p.P156fs
LIHC	TCGA-DD-A3A0-01	APAF1	ENST00000552268.1,ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000333991.1,ENST00000551964.1,ENST00000357310.1	chr12	99043264:99043462:99052937:99053121:99056233:99056346,	99052938	99053121	99052949	99052949	Frame_Shift_Del	G	-	p.G181fs
LIHC	TCGA-DD-A3A0-01	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99056452:99056584:99059330:99059569:99059967:99060135,	99059331	99059569	99059566	99059566	Frame_Shift_Del	A	-	p.T397fs
LIHC	TCGA-DD-A3A0-01	ANKS1B	ENST00000546568.1,ENST00000547010.1,ENST00000549558.2,ENST00000547446.1	chr12	99194870:99194903:99225806:99225914:99288407:99288639,99194870:99194903:99225806:99225914:99446934:99447082,	99225807	99225914	99225838	99225838	Frame_Shift_Del	G	-	p.P952fs
LIHC	TCGA-DD-A3A0-01	UHRF1BP1L	ENST00000279907.7,ENST00000356828.3	chr12	100482692:100482873:100489444:100489615:100491142:100491283,	100489445	100489615	100489487	100489487	Frame_Shift_Del	T	-	p.K266fs
LIHC	TCGA-DD-A3A0-01	UHRF1BP1L	ENST00000279907.7,ENST00000356828.3	chr12	100491142:100491283:100492129:100492319:100496543:100496635,	100492130	100492319	100492267	100492267	Frame_Shift_Del	A	-	p.S131fs
LIHC	TCGA-DD-A3A0-01	SCYL2	ENST00000360820.2	chr12	100661026:100661174:100676720:100676925:100685280:100685438,100661161:100661570:100676720:100676925:100685280:100685438,	100676721	100676925	100676894	100676894	Frame_Shift_Del	T	-	p.I49fs
LIHC	TCGA-DD-A3A0-01	SCYL2	ENST00000360820.2,ENST00000549687.1	chr12	100704821:100704971:100706209:100706431:100707199:100707316,	100706210	100706431	100706232	100706232	Frame_Shift_Del	G	-	p.W218fs
LIHC	TCGA-DD-A3A0-01	SLC17A8	ENST00000323346.5	chr12	100796117:100796257:100796373:100796523:100797815:100797948,	100796374	100796523	100796517	100796517	Frame_Shift_Del	A	-	p.I349fs
LIHC	TCGA-DD-A3A0-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904639	100904639	Frame_Shift_Del	C	-	p.P55fs
LIHC	TCGA-DD-A3A0-01	UTP20	ENST00000261637.4	chr12	101761637:101761754:101763498:101763669:101764209:101764341,	101763499	101763669	101763564	101763564	Frame_Shift_Del	A	-	p.T2150fs
LIHC	TCGA-DD-A3A0-01	UTP20	ENST00000261637.4	chr12	101769401:101769534:101773148:101773336:101774917:101774989,	101773149	101773336	101773209	101773209	Frame_Shift_Del	T	-	p.I2486fs
LIHC	TCGA-DD-A3A0-01	UTP20	ENST00000261637.4	chr12	101769401:101769534:101773148:101773336:101774917:101774989,	101773149	101773336	101773277	101773277	Frame_Shift_Del	A	-	p.K2510fs
LIHC	TCGA-DD-A3A0-01	GNPTAB	ENST00000299314.7,ENST00000549940.1	chr12	102174334:102174399:102179789:102179995:102182325:102182367,	102179790	102179995	102179975	102179975	Frame_Shift_Del	A	-	p.L130fs
LIHC	TCGA-DD-A3A0-01	DRAM1	ENST00000549365.1,ENST00000258534.8	chr12	102291640:102291708:102295068:102295211:102301963:102302105,	102295069	102295211	102295095	102295095	Frame_Shift_Del	A	-	p.K76fs
LIHC	TCGA-DD-A3A0-01	DRAM1	ENST00000551403.1,ENST00000258534.8	chr12	102307951:102308010:102313886:102313979:102314993:102315320,	102313887	102313979	102313945	102313945	Frame_Shift_Del	T	-	p.I213fs
LIHC	TCGA-DD-A3A0-01	PARPBP	ENST00000457614.2,ENST00000327680.2,ENST00000358383.5,ENST00000541394.1,ENST00000392911.2	chr12	102569260:102569444:102572369:102572548:102576326:102576405,	102572370	102572548	102572523	102572523	Frame_Shift_Del	G	-	p.G306fs
LIHC	TCGA-DD-A3A0-01	IGF1	ENST00000392904.1,ENST00000392905.2,ENST00000337514.6,ENST00000307046.8	chr12	102813286:102813468:102869420:102869577:102874096:102874102,	102869421	102869577	102869427	102869427	Frame_Shift_Del	A	-	p.Y72fs
LIHC	TCGA-DD-A3A0-01	C12orf42	ENST00000378113.2,ENST00000548048.1,ENST00000548883.1	chr12	103695732:103696337:103699751:103700123:103762664:103762776,	103699752	103700123	103699961	103699961	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A3A0-01	NT5DC3	ENST00000447799.1	chr12	104169266:104169408:104170821:104171859:104174077:104174142,	104170822	104171859	104171649	104171649	Frame_Shift_Del	G	-	p.P535fs
LIHC	TCGA-DD-A3A0-01	HSP90B1	ENST00000299767.5,ENST00000548462.1,ENST00000549334.1	chr12	104325298:104325401:104326054:104326196:104326603:104326707,	104326055	104326196	104326085	104326085	Frame_Shift_Del	A	-	p.L61fs
LIHC	TCGA-DD-A3A0-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104327733:104328065:104331472:104331584:104332117:104332237,	104331473	104331584	104331522	104331522	Frame_Shift_Del	A	-	p.K265fs
LIHC	TCGA-DD-A3A0-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104331472:104331584:104332117:104332237:104333286:104333403,	104332118	104332237	104332232	104332232	Frame_Shift_Del	A	-	p.K325fs
LIHC	TCGA-DD-A3A0-01	C12orf73	ENST00000378090.4	chr12	104348652:104348746:104350408:104350526:104350846:104350912,104345361:104345408:104350408:104350526:104359293:104359473,104347191:104347312:104350408:104350526:104350846:104350912,104345361:104345408:104350408:104350526:104350846:104350912,	104350409	104350526	104350444	104350444	Frame_Shift_Del	C	-	p.A25fs
LIHC	TCGA-DD-A3A0-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373671	104373671	Frame_Shift_Del	A	-	p.K78fs
LIHC	TCGA-DD-A3A0-01	HCFC2	ENST00000229330.4,ENST00000552343.1,ENST00000550335.1,ENST00000544223.2	chr12	104492120:104492258:104495745:104495931:104496736:104497079,	104495746	104495931	104495863	104495863	Frame_Shift_Del	A	-	p.K666fs
LIHC	TCGA-DD-A3A0-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000527688.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104713247:104713363:104714868:104715094:104719114:104719207,	104714869	104715094	104715032	104715032	Frame_Shift_Del	A	-	p.K287fs
LIHC	TCGA-DD-A3A0-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529751.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000527688.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104719114:104719207:104720124:104720201:104721292:104721352,	104720125	104720201	104720174	104720174	Frame_Shift_Del	A	-	p.E355fs
LIHC	TCGA-DD-A3A0-01	CHST11	ENST00000303694.5	chr12	104850778:104851292:104995683:104995769:105150726:105151117,104850750:104851307:104995683:104995769:105150726:105151117,	104995684	104995769	104995739	104995739	Frame_Shift_Del	C	-	p.S58fs
LIHC	TCGA-DD-A3A0-01	ALDH1L2	ENST00000424857.2,ENST00000549335.1,ENST00000552270.1,ENST00000258494.9	chr12	105445867:105445995:105446589:105446709:105451850:105451998,	105446590	105446709	105446654	105446654	Frame_Shift_Del	T	-	p.N448fs
LIHC	TCGA-DD-A3A0-01	RIC8B	ENST00000470628.2,ENST00000392839.2,ENST00000462949.1,ENST00000392837.4	chr12	107177774:107177822:107208473:107209082:107219503:107219598,	107208474	107209082	107209007	107209007	Frame_Shift_Del	G	-	p.Q222fs
LIHC	TCGA-DD-A3A0-01	BTBD11	ENST00000420571.2,ENST00000494235.2,ENST00000280758.5,ENST00000357167.4	chr12	108042982:108043051:108045450:108045564:108051285:108051495,	108045451	108045564	108045474	108045474	Frame_Shift_Del	C	-	p.F1005fs
LIHC	TCGA-DD-A3A0-01	PWP1	ENST00000541166.1,ENST00000547120.1,ENST00000412830.3,ENST00000552760.1	chr12	108086776:108086873:108090250:108090361:108091243:108091355,	108090251	108090361	108090273	108090273	Frame_Shift_Del	T	-	p.S175fs
LIHC	TCGA-DD-A3A0-01	PRDM4	ENST00000228437.5,ENST00000550376.1	chr12	108133159:108133328:108134722:108135037:108135997:108136125,	108134723	108135037	108134850	108134850	Frame_Shift_Del	A	-	p.F599fs
LIHC	TCGA-DD-A3A0-01	SART3	ENST00000431469.2	chr12	108931263:108931371:108931840:108931979:108932720:108932865,108930483:108930561:108931840:108931979:108932709:108932865,	108931841	108931979	108931954	108931954	Frame_Shift_Del	A	-	p.L363fs
LIHC	TCGA-DD-A3A0-01	DAO	ENST00000547166.1,ENST00000228476.3	chr12	109278773:109278976:109281225:109281340:109283244:109283321,	109281226	109281340	109281285	109281285	Frame_Shift_Del	A	-	p.E85fs
LIHC	TCGA-DD-A3A0-01	UNG	ENST00000539287.1,ENST00000336865.2,ENST00000242576.2	chr12	109537012:109537089:109539706:109539804:109540643:109540732,	109539707	109539804	109539780	109539780	Frame_Shift_Del	A	-	p.Q161fs
LIHC	TCGA-DD-A3A0-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109631452:109631534:109634812:109634958:109637206:109637357,	109634813	109634958	109634894	109634894	Frame_Shift_Del	G	-	p.G856fs
LIHC	TCGA-DD-A3A0-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109660603:109660717:109661619:109661709:109665175:109665294,	109661620	109661709	109661683	109661683	Frame_Shift_Del	A	-	p.K1286fs
LIHC	TCGA-DD-A3A0-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109679027:109679086:109680241:109680397:109683430:109683553,	109680242	109680397	109680355	109680355	Frame_Shift_Del	G	-	p.L1712fs
LIHC	TCGA-DD-A3A0-01	FOXN4	ENST00000299162.5	chr12	109724452:109724549:109725201:109725329:109725648:109725762,	109725202	109725329	109725293	109725293	Frame_Shift_Del	C	-	p.V169fs
LIHC	TCGA-DD-A3A0-01	MVK	ENST00000539575.1,ENST00000392727.3	chr12	110013802:110013950:110017606:110017751:110019199:110019340,110013806:110013950:110017606:110017751:110023826:110023901,	110017607	110017751	110017714	110017714	Frame_Shift_Del	T	-	p.F112fs
LIHC	TCGA-DD-A3A0-01	GLTP	ENST00000318348.4	chr12	110293423:110293574:110295330:110295464:110296487:110296546,	110295331	110295464	110295461	110295461	Frame_Shift_Del	T	-	p.I56fs
LIHC	TCGA-DD-A3A0-01	GLTP	ENST00000544393.1	chr12	110293423:110293574:110295387:110295464:110296487:110296546,	110295388	110295464	110295461	110295461	Frame_Shift_Del	T	-	p.I56fs
LIHC	TCGA-DD-A3A0-01	GIT2	ENST00000320063.9,ENST00000547815.1,ENST00000457474.2,ENST00000360185.4,ENST00000553118.1,ENST00000547267.2,ENST00000551455.1,ENST00000356259.4,ENST00000551209.1,ENST00000338373.5,ENST00000548643.1,ENST00000355312.3,ENST00000343646.5,ENST00000550186.1,ENST00000361006.5,ENST00000354574.4	chr12	110421412:110421499:110426767:110426873:110427494:110427607,	110426768	110426873	110426774	110426774	Frame_Shift_Del	A	-	p.L133fs
LIHC	TCGA-DD-A3A0-01	ANKRD13A	ENST00000553251.1,ENST00000261739.4,ENST00000549826.1	chr12	110468449:110468563:110471601:110471762:110474065:110474133,	110471602	110471762	110471619	110471619	Frame_Shift_Del	T	-	p.F456fs
LIHC	TCGA-DD-A3A0-01	C12orf76	ENST00000309050.5	chr12	110494993:110495101:110496792:110496968:110503664:110503838,	110496793	110496968	110496938	110496938	Frame_Shift_Del	T	-	p.I17fs
LIHC	TCGA-DD-A3A0-01	GPN3	ENST00000550228.1	chr12	110893642:110893735:110895314:110895439:110897499:110897667,110891616:110891676:110895314:110895439:110897499:110897667,	110895315	110895439	110895358	110895358	Frame_Shift_Del	C	-	p.G175fs
LIHC	TCGA-DD-A3A0-01	GPN3	ENST00000550974.1,ENST00000543199.1,ENST00000228827.3,ENST00000537466.2	chr12	110895314:110895439:110897499:110897667:110902910:110903019,	110897500	110897667	110897581	110897581	Frame_Shift_Del	C	-	p.E121fs
LIHC	TCGA-DD-A3A0-01	VPS29	ENST00000548259.1	chr12	110930800:110931036:110933816:110934008:110937339:110937351,110930800:110931036:110933816:110934008:110939853:110939883,	110933817	110934008	110933940	110933940	Frame_Shift_Del	T	-	p.K24fs
LIHC	TCGA-DD-A3A0-01	PPTC7	ENST00000548721.1,ENST00000354300.3	chr12	110974573:110974900:110975948:110976078:110977626:110977750,	110975949	110976078	110976037	110976037	Frame_Shift_Del	A	-	p.I256fs
LIHC	TCGA-DD-A3A0-01	HVCN1	ENST00000356742.5,ENST00000548312.1,ENST00000242607.8,ENST00000439744.2	chr12	111087972:111088085:111089021:111089253:111093038:111093143,	111089022	111089253	111089155	111089155	Frame_Shift_Del	A	-	p.F170fs
LIHC	TCGA-DD-A3A0-01	CUX2	ENST00000261726.6	chr12	111760224:111760384:111772244:111772514:111776089:111776278,	111772245	111772514	111772280	111772280	Frame_Shift_Del	C	-	p.P989fs
LIHC	TCGA-DD-A3A0-01	ATXN2	ENST00000389153.4,ENST00000483311.1,ENST00000377617.3,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111890557:111890644:111891480:111891649:111893832:111893916,	111891481	111891649	111891500	111891500	Frame_Shift_Del	G	-	p.P1298fs
LIHC	TCGA-DD-A3A0-01	ACAD10	ENST00000455480.2,ENST00000549590.1,ENST00000413681.3,ENST00000509936.1,ENST00000313698.4,ENST00000507135.1,ENST00000392636.2	chr12	112139965:112140114:112143541:112143736:112147329:112147488,	112143542	112143736	112143569	112143569	Frame_Shift_Del	T	-	p.F123fs
LIHC	TCGA-DD-A3A0-01	ACAD10	ENST00000455480.2,ENST00000549590.1,ENST00000413681.3,ENST00000509936.1,ENST00000313698.4,ENST00000507135.1,ENST00000392636.2	chr12	112139965:112140114:112143541:112143736:112147329:112147488,	112143542	112143736	112143710	112143710	Frame_Shift_Del	C	-	p.P169fs
LIHC	TCGA-DD-A3A0-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2	chr12	112305375:112305473:112306556:112306665:112308074:112308111,	112306557	112306665	112306591	112306591	Frame_Shift_Del	G	-	p.G108fs
LIHC	TCGA-DD-A3A0-01	TRAFD1	ENST00000257604.5,ENST00000412615.2	chr12	112585877:112586108:112587554:112587675:112589604:112589944,	112587555	112587675	112587602	112587602	Frame_Shift_Del	G	-	p.E402fs
LIHC	TCGA-DD-A3A0-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2	chr12	112638441:112638602:112641439:112641576:112642289:112642427,	112641440	112641576	112641478	112641478	Frame_Shift_Del	T	-	p.T2644fs
LIHC	TCGA-DD-A3A0-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2,ENST00000550968.1	chr12	112646297:112646434:112647818:112648056:112650290:112650454,	112647819	112648056	112647872	112647872	Frame_Shift_Del	G	-	p.P2459fs
LIHC	TCGA-DD-A3A0-01	RPL6	ENST00000546368.2	chr12	112844102:112844146:112844550:112846460:112847390:112847409,	112844551	112846460	112844638	112844638	Frame_Shift_Del	T	-	p.K131fs
LIHC	TCGA-DD-A3A0-01	RPH3A	ENST00000551052.1	chr12	113274295:113274307:113285500:113285647:113303218:113303348,113266123:113266194:113285500:113285647:113303218:113303237,	113285501	113285647	113285584	113285584	Frame_Shift_Del	A	-	p.E56fs
LIHC	TCGA-DD-A3A0-01	OAS1	ENST00000551241.1	chr12	113354421:113354543:113355351:113355505:113357291:113357680,113354421:113354543:113355351:113355505:113357193:113357237,113354421:113354543:113355351:113355505:113369682:113369947,	113355352	113355505	113355409	113355409	Frame_Shift_Del	G	-	p.K314fs
LIHC	TCGA-DD-A3A0-01	OAS3	ENST00000228928.7	chr12	113400456:113400707:113401117:113401262:113402039:113402213,	113401118	113401262	113401171	113401171	Frame_Shift_Del	G	-	p.W713fs
LIHC	TCGA-DD-A3A0-01	RASAL1	ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000551051.1	chr12	113538432:113538485:113539693:113539814:113541750:113541886,	113539694	113539814	113539708	113539708	Frame_Shift_Del	C	-	p.G738fs
LIHC	TCGA-DD-A3A0-01	DDX54	ENST00000314045.7,ENST00000306014.5	chr12	113603448:113603522:113603606:113603837:113607574:113607709,	113603607	113603837	113603629	113603629	Frame_Shift_Del	C	-	p.G541fs
LIHC	TCGA-DD-A3A0-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000552542.1,ENST00000548465.1,ENST00000552642.1,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000552897.1,ENST00000550785.1	chr12	113698172:113698297:113703984:113704161:113705647:113705684,	113703985	113704161	113704013	113704013	Frame_Shift_Del	C	-	p.T161fs
LIHC	TCGA-DD-A3A0-01	PLBD2	ENST00000280800.3	chr12	113821909:113822070:113822655:113822751:113823016:113823088,	113822656	113822751	113822701	113822701	Frame_Shift_Del	G	-	p.P388fs
LIHC	TCGA-DD-A3A0-01	SDS	ENST00000257549.4	chr12	113831696:113831821:113834969:113835197:113836319:113836411,	113834970	113835197	113835064	113835064	Frame_Shift_Del	C	-	p.D187fs
LIHC	TCGA-DD-A3A0-01	SDSL	ENST00000553248.1,ENST00000403593.4,ENST00000345635.4	chr12	113866224:113866264:113866964:113867104:113871938:113872027,	113866965	113867104	113867032	113867032	Frame_Shift_Del	C	-	p.L94fs
LIHC	TCGA-DD-A3A0-01	SDSL	ENST00000553248.1,ENST00000403593.4,ENST00000345635.4	chr12	113866224:113866264:113866964:113867104:113871938:113872027,	113866965	113867104	113867077	113867077	Frame_Shift_Del	G	-	p.E109fs
LIHC	TCGA-DD-A3A0-01	SDSL	ENST00000553248.1,ENST00000546672.1,ENST00000403593.4,ENST00000345635.4	chr12	113871938:113872027:113873133:113873361:113874555:113874574,	113873134	113873361	113873210	113873210	Frame_Shift_Del	G	-	p.G177fs
LIHC	TCGA-DD-A3A0-01	MED13L	ENST00000281928.3	chr12	116401211:116401324:116403886:116404048:116406744:116406902,	116403887	116404048	116403934	116403934	Frame_Shift_Del	A	-	p.W2114fs
LIHC	TCGA-DD-A3A0-01	MED13L	ENST00000281928.3	chr12	116403886:116404048:116406744:116406902:116408398:116408575,	116406745	116406902	116406767	116406767	Frame_Shift_Del	C	-	p.G2068fs
LIHC	TCGA-DD-A3A0-01	MED13L	ENST00000281928.3	chr12	116446205:116446937:116450601:116450706:116452913:116453079,	116450602	116450706	116450684	116450684	Frame_Shift_Del	T	-	p.T400fs
LIHC	TCGA-DD-A3A0-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117718529:117718671:117723045:117723137:117723908:117724071,	117723046	117723137	117723102	117723102	Frame_Shift_Del	C	-	p.G442fs
LIHC	TCGA-DD-A3A0-01	VSIG10	ENST00000359236.5	chr12	118511503:118511797:118517150:118517411:118519931:118520234,	118517151	118517411	118517327	118517327	Frame_Shift_Del	C	-	p.G250fs
LIHC	TCGA-DD-A3A0-01	TAOK3	ENST00000537305.1,ENST00000537952.1,ENST00000419821.2,ENST00000392533.3	chr12	118610261:118610465:118615005:118615134:118619175:118619412,	118615006	118615134	118615009	118615009	Frame_Shift_Del	T	-	p.K564fs
LIHC	TCGA-DD-A3A0-01	TAOK3	ENST00000537305.1,ENST00000537952.1,ENST00000419821.2,ENST00000392533.3	chr12	118610261:118610465:118615005:118615134:118619175:118619412,	118615006	118615134	118615014	118615014	Frame_Shift_Del	T	-	p.I563fs
LIHC	TCGA-DD-A3A0-01	CIT	ENST00000543324.1,ENST00000537607.1,ENST00000392520.2,ENST00000392521.2,ENST00000261833.7,ENST00000545913.1	chr12	120145983:120146123:120148055:120148191:120148344:120148425,	120148056	120148191	120148139	120148139	Frame_Shift_Del	T	-	p.N1663fs
LIHC	TCGA-DD-A3A0-01	CIT	ENST00000537607.1,ENST00000392520.2,ENST00000392521.2,ENST00000261833.7,ENST00000545913.1	chr12	120168299:120168435:120171968:120172162:120172964:120173162,	120171969	120172162	120172099	120172099	Frame_Shift_Del	G	-	p.L1074fs
LIHC	TCGA-DD-A3A0-01	CIT	ENST00000546026.1	chr12	120168299:120168435:120171968:120172211:120172964:120173162,	120171969	120172211	120172099	120172099	Frame_Shift_Del	G	-	p.L1074fs
LIHC	TCGA-DD-A3A0-01	CIT	ENST00000392521.2,ENST00000261833.7	chr12	120222828:120222869:120241009:120241193:120260623:120260777,	120241010	120241193	120241141	120241141	Frame_Shift_Del	A	-	p.F388fs
LIHC	TCGA-DD-A3A0-01	RAB35	ENST00000534951.1,ENST00000540803.1,ENST00000538903.1	chr12	120541629:120541753:120546220:120546271:120554402:120554540,	120546221	120546271	120546240	120546240	Frame_Shift_Del	A	-	p.F28fs
LIHC	TCGA-DD-A3A0-01	PXN	ENST00000424649.2,ENST00000536957.1,ENST00000458477.2,ENST00000538144.1,ENST00000228307.7,ENST00000267257.7,ENST00000323871.5,ENST00000547983.1	chr12	120659445:120659561:120660351:120660553:120660665:120660802,	120660352	120660553	120660480	120660480	Frame_Shift_Del	G	-	p.P187fs
LIHC	TCGA-DD-A3A0-01	SIRT4	ENST00000202967.4	chr12	120740123:120740181:120741363:120741861:120750258:120750553,	120741364	120741861	120741519	120741519	Frame_Shift_Del	C	-	p.T52fs
LIHC	TCGA-DD-A3A0-01	MSI1	ENST00000257552.2	chr12	120802516:120802558:120805810:120805895:120805994:120806076,	120805811	120805895	120805875	120805875	Frame_Shift_Del	A	-	p.F68fs
LIHC	TCGA-DD-A3A0-01	SRSF9	ENST00000229390.3	chr12	120899564:120899965:120901752:120901925:120903429:120903590,	120901753	120901925	120901810	120901810	Frame_Shift_Del	T	-	p.K155fs
LIHC	TCGA-DD-A3A0-01	RNF10	ENST00000540046.1,ENST00000545419.1,ENST00000546262.1,ENST00000413266.2,ENST00000325954.4,ENST00000366112.2	chr12	121002898:121002992:121003230:121003332:121004627:121004697,	121003231	121003332	121003261	121003261	Frame_Shift_Del	A	-	p.Q605fs
LIHC	TCGA-DD-A3A0-01	RNF10	ENST00000538254.1,ENST00000413266.2,ENST00000325954.4	chr12	121004755:121004783:121013433:121013491:121013594:121013753,121008993:121009094:121013433:121013491:121013594:121013753,	121013434	121013491	121013473	121013473	Frame_Shift_Del	A	-	p.K728fs
LIHC	TCGA-DD-A3A0-01	MLEC	ENST00000535656.1	chr12	121131969:121132072:121132626:121132803:121132897:121132955,121131969:121132072:121132626:121132803:121134118:121134156,	121132627	121132803	121132737	121132737	Frame_Shift_Del	G	-	p.K175fs
LIHC	TCGA-DD-A3A0-01	UNC119B	ENST00000344651.4	chr12	121154435:121154542:121154672:121154845:121157722:121161443,	121154673	121154845	121154784	121154784	Frame_Shift_Del	C	-	p.I194fs
LIHC	TCGA-DD-A3A0-01	SPPL3	ENST00000543181.1,ENST00000543608.1,ENST00000353487.2,ENST00000536996.1	chr12	121221476:121221555:121222276:121222396:121229271:121229360,	121222277	121222396	121222293	121222293	Frame_Shift_Del	A	-	p.F98fs
LIHC	TCGA-DD-A3A0-01	OASL	ENST00000257570.5	chr12	121461792:121461940:121465378:121465620:121469244:121469397,	121465379	121465620	121465384	121465384	Frame_Shift_Del	T	-	p.K298fs
LIHC	TCGA-DD-A3A0-01	OASL	ENST00000257570.5	chr12	121461792:121461940:121465378:121465620:121469244:121469397,	121465379	121465620	121465396	121465396	Frame_Shift_Del	T	-	p.K294fs
LIHC	TCGA-DD-A3A0-01	P2RX7	ENST00000541564.1,ENST00000541446.1,ENST00000539695.1,ENST00000541022.1	chr12	121603159:121603240:121603860:121603990:121605290:121605427,121603159:121603240:121603860:121603990:121613190:121613281,	121603861	121603990	121603984	121603984	Frame_Shift_Del	A	-	p.A76fs
LIHC	TCGA-DD-A3A0-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000402834.4	chr12	121708700:121708748:121711858:121712388:121735341:121735860,121708700:121708748:121711858:121712388:121734440:121734489,	121711859	121712388	121711929	121711929	Frame_Shift_Del	G	-	p.P134fs
LIHC	TCGA-DD-A3A0-01	ANAPC5	ENST00000535641.1	chr12	121758187:121758262:121764898:121766300:121768385:121768475,	121764899	121766300	121766147	121766147	Frame_Shift_Del	T	-	p.T426fs
LIHC	TCGA-DD-A3A0-01	RNF34	ENST00000392464.2,ENST00000361234.5,ENST00000392465.3	chr12	121853961:121854180:121855306:121855714:121858044:121858137,	121855307	121855714	121855601	121855601	Frame_Shift_Del	T	-	p.F175fs
LIHC	TCGA-DD-A3A0-01	MORN3	ENST00000542364.1	chr12	122097096:122097254:122107244:122107418:122110484:122110537,	122107245	122107418	122107364	122107364	Frame_Shift_Del	T	-	p.K9fs
LIHC	TCGA-DD-A3A0-01	MLXIP	ENST00000319080.7	chr12	122616838:122616930:122617894:122618534:122619770:122619892,	122617895	122618534	122618185	122618185	Frame_Shift_Del	C	-	p.N461fs
LIHC	TCGA-DD-A3A0-01	MLXIP	ENST00000538698.1,ENST00000366272.2,ENST00000319080.7,ENST00000542417.1	chr12	122620174:122620213:122622015:122622137:122622740:122622842,	122622016	122622137	122622117	122622117	Frame_Shift_Del	A	-	p.K712fs
LIHC	TCGA-DD-A3A0-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122794308:122794429:122801295:122801402:122803778:122803895,	122801296	122801402	122801346	122801346	Frame_Shift_Del	T	-	p.K1130fs
LIHC	TCGA-DD-A3A0-01	CLIP1	ENST00000537178.1	chr12	122821178:122821295:122825299:122826244:122837272:122837333,	122825300	122826244	122826043	122826043	Frame_Shift_Del	T	-	p.I559fs
LIHC	TCGA-DD-A3A0-01	CLIP1	ENST00000361654.4	chr12	122821178:122821295:122825527:122826244:122837272:122837333,	122825528	122826244	122826043	122826043	Frame_Shift_Del	T	-	p.I559fs
LIHC	TCGA-DD-A3A0-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122837272:122837333:122838999:122839103:122839661:122839859,	122839000	122839103	122839079	122839079	Frame_Shift_Del	T	-	p.M410fs
LIHC	TCGA-DD-A3A0-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122838999:122839103:122839661:122839859:122845505:122845728,	122839662	122839859	122839672	122839672	Frame_Shift_Del	C	-	p.G398fs
LIHC	TCGA-DD-A3A0-01	CLIP1	ENST00000302528.7,ENST00000540304.1,ENST00000541108.1,ENST00000361654.4,ENST00000540338.1,ENST00000537004.1,ENST00000358808.2,ENST00000537178.1	chr12	122845505:122845728:122848529:122848654:122861935:122862507,	122848530	122848654	122848615	122848615	Frame_Shift_Del	C	-	p.E233fs
LIHC	TCGA-DD-A3A0-01	RSRC2	ENST00000527173.2,ENST00000532695.1,ENST00000354654.2,ENST00000433877.2,ENST00000331738.7,ENST00000392442.2	chr12	122989926:122990253:122991380:122991470:122992764:122992953,	122991381	122991470	122991396	122991396	Frame_Shift_Del	T	-	p.K370fs
LIHC	TCGA-DD-A3A0-01	RSRC2	ENST00000527173.2,ENST00000532695.1	chr12	122991380:122991470:122992764:122992997:122995655:122995735,	122992765	122992997	122992797	122992797	Frame_Shift_Del	T	-	p.R335fs
LIHC	TCGA-DD-A3A0-01	RSRC2	ENST00000354654.2,ENST00000433877.2,ENST00000331738.7,ENST00000392442.2	chr12	122991380:122991470:122992764:122992994:122995655:122995735,	122992765	122992994	122992797	122992797	Frame_Shift_Del	T	-	p.R335fs
LIHC	TCGA-DD-A3A0-01	RSRC2	ENST00000527173.2,ENST00000532695.1	chr12	122991380:122991470:122992764:122992997:122995655:122995735,	122992765	122992997	122992816	122992816	Frame_Shift_Del	A	-	p.F328fs
LIHC	TCGA-DD-A3A0-01	RSRC2	ENST00000354654.2,ENST00000433877.2,ENST00000331738.7,ENST00000392442.2	chr12	122991380:122991470:122992764:122992994:122995655:122995735,	122992765	122992994	122992816	122992816	Frame_Shift_Del	A	-	p.F328fs
LIHC	TCGA-DD-A3A0-01	KNTC1	ENST00000450485.2,ENST00000333479.7	chr12	123041930:123042056:123042146:123042236:123046467:123046521,	123042147	123042236	123042199	123042199	Frame_Shift_Del	A	-	p.E484fs
LIHC	TCGA-DD-A3A0-01	KNTC1	ENST00000333479.7	chr12	123065149:123065217:123067251:123067532:123068824:123068997,	123067252	123067532	123067494	123067494	Frame_Shift_Del	A	-	p.L1075fs
LIHC	TCGA-DD-A3A0-01	CCDC62	ENST00000392441.4,ENST00000341952.4,ENST00000392440.2,ENST00000537566.1,ENST00000253079.6	chr12	123281853:123281942:123282631:123282747:123285670:123286399,	123282632	123282747	123282640	123282640	Frame_Shift_Del	A	-	p.V290fs
LIHC	TCGA-DD-A3A0-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123339811:123339952:123340097:123340159:123340377:123340450,	123340098	123340159	123340131	123340131	Frame_Shift_Del	C	-	p.P344fs
LIHC	TCGA-DD-A3A0-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123340097:123340159:123340377:123340450:123340526:123340648,	123340378	123340450	123340413	123340413	Frame_Shift_Del	A	-	p.E364fs
LIHC	TCGA-DD-A3A0-01	OGFOD2	ENST00000536150.1,ENST00000535970.1	chr12	123460357:123460414:123461200:123461314:123461417:123461510,123459798:123459930:123461200:123461314:123461417:123461510,123459517:123459668:123461200:123461314:123461417:123461510,	123461201	123461314	123461281	123461281	Frame_Shift_Del	C	-	p.H30fs
LIHC	TCGA-DD-A3A0-01	OGFOD2	ENST00000540324.1,ENST00000545056.1,ENST00000545317.1	chr12	123460357:123460414:123461147:123461314:123461417:123461510,	123461148	123461314	123461281	123461281	Frame_Shift_Del	C	-	p.H30fs
LIHC	TCGA-DD-A3A0-01	OGFOD2	ENST00000406539.2	chr12	123459517:123459668:123460357:123461314:123461417:123461510,	123460358	123461314	123461281	123461281	Frame_Shift_Del	C	-	p.H30fs
LIHC	TCGA-DD-A3A0-01	DNAH10	ENST00000497783.2,ENST00000409039.3	chr12	124363810:124363904:124364180:124364348:124366171:124366360,	124364181	124364348	124364220	124364220	Frame_Shift_Del	A	-	p.K2718fs
LIHC	TCGA-DD-A3A0-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1,ENST00000458234.1	chr12	124832719:124832860:124835132:124835283:124838638:124838742,	124835133	124835283	124835183	124835183	Frame_Shift_Del	T	-	p.K1272fs
LIHC	TCGA-DD-A3A0-01	PIWIL1	ENST00000245255.3	chr12	130842025:130842098:130845724:130845925:130846042:130846146,	130845725	130845925	130845773	130845773	Frame_Shift_Del	A	-	p.K573fs
LIHC	TCGA-DD-A3A0-01	PIWIL1	ENST00000245255.3	chr12	130842025:130842098:130845724:130845925:130846042:130846146,	130845725	130845925	130845801	130845801	Frame_Shift_Del	C	-	p.T581fs
LIHC	TCGA-DD-A3A0-01	SFSWAP	ENST00000535236.1,ENST00000538548.1,ENST00000541286.1,ENST00000261674.4	chr12	132241017:132241189:132249000:132249231:132250662:132250853,	132249001	132249231	132249061	132249061	Frame_Shift_Del	A	-	p.E594fs
LIHC	TCGA-DD-A3A0-01	SFSWAP	ENST00000535236.1,ENST00000538548.1,ENST00000541286.1,ENST00000261674.4	chr12	132241017:132241189:132249000:132249231:132250662:132250853,	132249001	132249231	132249168	132249168	Frame_Shift_Del	C	-	p.P630fs
LIHC	TCGA-DD-A3A0-01	SFSWAP	ENST00000538548.1,ENST00000261674.4	chr12	132250662:132250853:132262609:132262875:132271007:132271133,	132262610	132262875	132262825	132262825	Frame_Shift_Del	A	-	p.S786fs
LIHC	TCGA-DD-A3A0-01	EP400	ENST00000389561.2,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132464241:132464338:132466033:132466141:132466637:132467023,	132466034	132466141	132466079	132466079	Frame_Shift_Del	T	-	p.V530fs
LIHC	TCGA-DD-A3A0-01	IFT88	ENST00000351808.5,ENST00000319980.6,ENST00000537103.1,ENST00000382778.4	chr13	21172789:21172892:21173589:21173704:21175843:21176072,	21173590	21173704	21173660	21173660	Frame_Shift_Del	C	-	p.Y265fs
LIHC	TCGA-DD-A3A0-01	SAP18	ENST00000607003.1,ENST00000450573.1,ENST00000382533.4	chr13	21715024:21715134:21720943:21721066:21721324:21721458,	21720944	21721066	21721004	21721004	Frame_Shift_Del	A	-	p.R100fs
LIHC	TCGA-DD-A3A0-01	SKA3	ENST00000314759.5,ENST00000298260.4	chr13	21728835:21729289:21732060:21732264:21734040:21734126,21729831:21729950:21732060:21732264:21734040:21734126,	21732061	21732264	21732185	21732185	Frame_Shift_Del	A	-	p.L332fs
LIHC	TCGA-DD-A3A0-01	PARP4	ENST00000381989.3	chr13	25005514:25005614:25008532:25009612:25015983:25016106,	25008533	25009612	25009331	25009331	Frame_Shift_Del	A	-	p.F1316fs
LIHC	TCGA-DD-A3A0-01	PARP4	ENST00000381989.3	chr13	25034109:25034274:25043161:25043248:25044031:25044163,	25043162	25043248	25043227	25043227	Frame_Shift_Del	G	-	p.Q691fs
LIHC	TCGA-DD-A3A0-01	PARP4	ENST00000381989.3	chr13	25044031:25044163:25049609:25049734:25051838:25051995,	25049610	25049734	25049637	25049637	Frame_Shift_Del	T	-	p.K629fs
LIHC	TCGA-DD-A3A0-01	PARP4	ENST00000381989.3	chr13	25064805:25064966:25066558:25066732:25067733:25067871,	25066559	25066732	25066607	25066607	Frame_Shift_Del	G	-	p.P335fs
LIHC	TCGA-DD-A3A0-01	PARP4	ENST00000381989.3	chr13	25072253:25072367:25073438:25073514:25074453:25074520,	25073439	25073514	25073469	25073469	Frame_Shift_Del	A	-	p.F149fs
LIHC	TCGA-DD-A3A0-01	ATP12A	ENST00000381946.3	chr13	25264741:25264859:25265119:25265388:25266566:25266765,	25265120	25265388	25265199	25265199	Frame_Shift_Del	A	-	p.G299fs
LIHC	TCGA-DD-A3A0-01	ATP12A	ENST00000218548.6	chr13	25264741:25264859:25265101:25265388:25266566:25266765,	25265102	25265388	25265199	25265199	Frame_Shift_Del	A	-	p.G299fs
LIHC	TCGA-DD-A3A0-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014316	28014316	Frame_Shift_Del	A	-	p.F90fs
LIHC	TCGA-DD-A3A0-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306278	33306278	Frame_Shift_Del	C	-	p.P723fs
LIHC	TCGA-DD-A3A0-01	NBEA	ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3	chr13	35692513:35692611:35697618:35697711:35716405:35716514,	35697619	35697711	35697682	35697682	Frame_Shift_Del	G	-	p.L769fs
LIHC	TCGA-DD-A3A0-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39588302	39588302	Frame_Shift_Del	A	-	p.S363fs
LIHC	TCGA-DD-A3A0-01	SLC25A15	ENST00000478827.1,ENST00000338625.4	chr13	41379253:41379391:41381429:41381599:41382573:41382606,	41381430	41381599	41381566	41381566	Frame_Shift_Del	T	-	p.F198fs
LIHC	TCGA-DD-A3A0-01	DGKH	ENST00000337343.4,ENST00000379274.2,ENST00000540693.1,ENST00000538674.1,ENST00000261491.5,ENST00000536612.1	chr13	42772613:42772731:42773701:42773812:42773948:42774045,	42773702	42773812	42773716	42773716	Frame_Shift_Del	A	-	p.E631fs
LIHC	TCGA-DD-A3A0-01	AKAP11	ENST00000025301.2	chr13	42869830:42869878:42871183:42871318:42872668:42872933,	42871184	42871318	42871186	42871186	Frame_Shift_Del	T	-	p.D73fs
LIHC	TCGA-DD-A3A0-01	AKAP11	ENST00000025301.2	chr13	42869830:42869878:42871183:42871318:42872668:42872933,	42871184	42871318	42871197	42871197	Frame_Shift_Del	T	-	p.V77fs
LIHC	TCGA-DD-A3A0-01	SUCLA2	ENST00000493152.1	chr13	48510752:48510908:48517479:48517580:48523074:48523163,	48517480	48517580	48517521	48517521	Frame_Shift_Del	A	-	p.F459fs
LIHC	TCGA-DD-A3A0-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037924	49037924	Frame_Shift_Del	A	-	p.K722fs
LIHC	TCGA-DD-A3A0-01	FNDC3A	ENST00000378383.1,ENST00000484074.1,ENST00000492622.2,ENST00000541916.1	chr13	49649424:49649500:49688790:49688867:49705272:49705506,	49688791	49688867	49688819	49688819	Frame_Shift_Del	A	-	p.P68fs
LIHC	TCGA-DD-A3A0-01	CDADC1	ENST00000251108.6,ENST00000444959.1	chr13	49841625:49842195:49848426:49848476:49852485:49852655,	49848427	49848476	49848447	49848447	Frame_Shift_Del	G	-	p.G341fs
LIHC	TCGA-DD-A3A0-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50056872:50057098:50057599:50057699:50059765:50059859,	50057600	50057699	50057674	50057674	Frame_Shift_Del	T	-	p.I486fs
LIHC	TCGA-DD-A3A0-01	KPNA3	ENST00000261667.3	chr13	50276521:50276616:50279756:50279919:50280233:50280305,	50279757	50279919	50279775	50279775	Frame_Shift_Del	T	-	p.I453fs
LIHC	TCGA-DD-A3A0-01	SUGT1	ENST00000310528.8,ENST00000535397.1,ENST00000343788.6	chr13	53250364:53250455:53254108:53254290:53261868:53262007,	53254109	53254290	53254113	53254113	Frame_Shift_Del	A	-	p.V185fs
LIHC	TCGA-DD-A3A0-01	TBC1D4	ENST00000431480.2,ENST00000488955.1	chr13	75894149:75894173:75898372:75898537:75900332:75900386,75886917:75887034:75898372:75898537:75900332:75900386,	75898373	75898537	75898438	75898438	Frame_Shift_Del	G	-	p.P711fs
LIHC	TCGA-DD-A3A0-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671893	77671893	Frame_Shift_Del	T	-	p.K3132fs
LIHC	TCGA-DD-A3A0-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2,ENST00000360084.5	chr13	77799569:77799689:77807290:77807398:77817193:77817295,	77807291	77807398	77807307	77807307	Frame_Shift_Del	T	-	p.K907fs
LIHC	TCGA-DD-A3A0-01	RNF219	ENST00000282003.6	chr13	79188425:79191257:79209244:79209333:79212957:79213206,	79209245	79209333	79209322	79209322	Frame_Shift_Del	T	-	p.K187fs
LIHC	TCGA-DD-A3A0-01	ABCC4	ENST00000538287.1,ENST00000376887.4,ENST00000412704.1,ENST00000431522.1,ENST00000536256.1	chr13	95858785:95859035:95860053:95860179:95861687:95861851,	95860054	95860179	95860131	95860131	Frame_Shift_Del	T	-	p.E278fs
LIHC	TCGA-DD-A3A0-01	DNAJC3	ENST00000376795.6,ENST00000602402.1	chr13	96416086:96416207:96438192:96438325:96439260:96439409,	96438193	96438325	96438208	96438208	Frame_Shift_Del	A	-	p.E364fs
LIHC	TCGA-DD-A3A0-01	MBNL2	ENST00000343600.4,ENST00000376673.3,ENST00000397601.1,ENST00000469707.1,ENST00000345429.6	chr13	97928457:97928663:97986529:97986694:97995269:97995470,	97986530	97986694	97986580	97986580	Frame_Shift_Del	A	-	p.L75fs
LIHC	TCGA-DD-A3A0-01	STK24	ENST00000397517.2,ENST00000444574.1,ENST00000539966.1,ENST00000376547.3	chr13	99115944:99116090:99118629:99118815:99127074:99127232,	99118630	99118815	99118706	99118706	Frame_Shift_Del	G	-	p.P237fs
LIHC	TCGA-DD-A3A0-01	DOCK9	ENST00000419908.1,ENST00000339416.2,ENST00000400228.2,ENST00000376460.1	chr13	99452541:99452732:99457252:99457463:99459914:99460061,	99457253	99457463	99457397	99457397	Frame_Shift_Del	C	-	p.D1875fs
LIHC	TCGA-DD-A3A0-01	TM9SF2	ENST00000376387.4	chr13	100196116:100196249:100199238:100199358:100201418:100201476,	100199239	100199358	100199256	100199256	Frame_Shift_Del	T	-	p.F390fs
LIHC	TCGA-DD-A3A0-01	TMTC4	ENST00000376234.3,ENST00000342624.5	chr13	101308634:101308722:101315217:101315434:101316474:101316590,	101315218	101315434	101315321	101315321	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-DD-A3A0-01	ITGBL1	ENST00000376180.3,ENST00000376162.3,ENST00000545560.2	chr13	102235565:102235706:102250502:102250649:102344934:102345051,	102250503	102250649	102250538	102250538	Frame_Shift_Del	A	-	p.K302fs
LIHC	TCGA-DD-A3A0-01	KDELC1	ENST00000376004.4,ENST00000460338.1	chr13	103440183:103440273:103441361:103441571:103443250:103443488,	103441362	103441571	103441392	103441392	Frame_Shift_Del	T	-	p.K421fs
LIHC	TCGA-DD-A3A0-01	MYO16	ENST00000457511.2,ENST00000357550.2,ENST00000356711.2	chr13	109707393:109707474:109707737:109707943:109753132:109753235,	109707738	109707943	109707839	109707839	Frame_Shift_Del	T	-	p.N1055fs
LIHC	TCGA-DD-A3A0-01	ANKRD10	ENST00000267339.2	chr13	111536076:111536140:111545374:111545610:111558379:111558442,	111545375	111545610	111545476	111545476	Frame_Shift_Del	C	-	p.G197fs
LIHC	TCGA-DD-A3A0-01	ARHGEF7	ENST00000375737.5,ENST00000375739.2,ENST00000375741.2,ENST00000375723.1,ENST00000466143.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5	chr13	111806251:111806338:111870025:111870227:111885551:111885640,111857635:111857720:111870025:111870227:111885551:111885640,111862218:111862349:111870025:111870227:111885551:111885640,	111870026	111870227	111870193	111870193	Frame_Shift_Del	C	-	p.F233fs
LIHC	TCGA-DD-A3A0-01	ARHGEF7	ENST00000469877.1,ENST00000544132.1	chr13	111927878:111928025:111929933:111930020:111932884:111933024,	111929934	111930020	111929971	111929971	Frame_Shift_Del	T	-	p.V507fs
LIHC	TCGA-DD-A3A0-01	ATP11A	ENST00000418678.1,ENST00000459908.1,ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000471555.1,ENST00000283558.8	chr13	113496622:113496693:113505350:113505532:113508592:113508844,	113505351	113505532	113505459	113505459	Frame_Shift_Del	A	-	p.K641fs
LIHC	TCGA-DD-A3A0-01	ATP11A	ENST00000487903.1,ENST00000375630.2,ENST00000375645.3,ENST00000283558.8	chr13	113513706:113513766:113516753:113516889:113526048:113526114,113514600:113514728:113516753:113516889:113526048:113526114,	113516754	113516889	113516771	113516771	Frame_Shift_Del	C	-	p.A958fs
LIHC	TCGA-DD-A3A0-01	LAMP1	ENST00000397181.3	chr13	113951699:113951810:113960799:113960921:113963957:113964020,	113960800	113960921	113960913	113960913	Frame_Shift_Del	G	-	p.G59fs
LIHC	TCGA-DD-A3A0-01	LAMP1	ENST00000472564.1,ENST00000332556.4	chr13	113960799:113960921:113963957:113964177:113965023:113965182,	113963958	113964177	113964158	113964158	Frame_Shift_Del	C	-	p.F128fs
LIHC	TCGA-DD-A3A0-01	DCUN1D2	ENST00000496873.1	chr13	114128524:114128569:114134889:114135058:114144981:114145006,	114134890	114135058	114135011	114135011	Frame_Shift_Del	A	-	p.C90fs
LIHC	TCGA-DD-A3A0-01	TMCO3	ENST00000375391.1,ENST00000474393.1,ENST00000434316.2	chr13	114152656:114152836:114154272:114154464:114156066:114156195,	114154273	114154464	114154409	114154409	Frame_Shift_Del	T	-	p.I254fs
LIHC	TCGA-DD-A3A0-01	CDC16	ENST00000356221.3,ENST00000252458.6,ENST00000375308.1,ENST00000360383.3,ENST00000375310.1,ENST00000252457.5,ENST00000375312.3	chr13	115007595:115007755:115008731:115008823:115009330:115009464,	115008732	115008823	115008755	115008755	Frame_Shift_Del	C	-	p.P189fs
LIHC	TCGA-DD-A3A0-01	PARP2	ENST00000529465.2	chr14	20811795:20811846:20813090:20813246:20813552:20813623,	20813091	20813246	20813095	20813095	Frame_Shift_Del	A	-	p.L17fs
LIHC	TCGA-DD-A3A0-01	PARP2	ENST00000250416.5,ENST00000527915.1	chr14	20811795:20811846:20813090:20813285:20813552:20813623,	20813091	20813285	20813095	20813095	Frame_Shift_Del	A	-	p.L17fs
LIHC	TCGA-DD-A3A0-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1857fs
LIHC	TCGA-DD-A3A0-01	TEP1	ENST00000262715.5,ENST00000555727.1	chr14	20871881:20872043:20872769:20872931:20873609:20873744,	20872770	20872931	20872861	20872861	Frame_Shift_Del	A	-	p.F314fs
LIHC	TCGA-DD-A3A0-01	METTL17	ENST00000339374.6,ENST00000553441.1,ENST00000553536.1,ENST00000557701.1,ENST00000382985.4,ENST00000554985.1,ENST00000554283.1,ENST00000556670.2	chr14	21458188:21458421:21458622:21458757:21460282:21460363,21458388:21458542:21458622:21458757:21460250:21460352,21458388:21458542:21458622:21458757:21460282:21460363,	21458623	21458757	21458736	21458736	Frame_Shift_Del	A	-	p.K116fs
LIHC	TCGA-DD-A3A0-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679573	21679573	Frame_Shift_Del	C	-	p.D265fs
LIHC	TCGA-DD-A3A0-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679573	21679573	Frame_Shift_Del	C	-	p.D265fs
LIHC	TCGA-DD-A3A0-01	SUPT16H	ENST00000216297.2,ENST00000557394.1	chr14	21819637:21820977:21821646:21821724:21821861:21821991,	21821647	21821724	21821677	21821677	Frame_Shift_Del	A	-	p.W990fs
LIHC	TCGA-DD-A3A0-01	SUPT16H	ENST00000556309.1	chr14	21838494:21838647:21840032:21840129:21841496:21841589,	21840033	21840129	21840082	21840082	Frame_Shift_Del	T	-	p.N94fs
LIHC	TCGA-DD-A3A0-01	SUPT16H	ENST00000216297.2,ENST00000556217.1	chr14	21838494:21838647:21840032:21840203:21841496:21841589,	21840033	21840203	21840082	21840082	Frame_Shift_Del	T	-	p.N94fs
LIHC	TCGA-DD-A3A0-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991629	21991629	Frame_Shift_Del	C	-	p.A745fs
LIHC	TCGA-DD-A3A0-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992140	21992140	Frame_Shift_Del	G	-	p.P574fs
LIHC	TCGA-DD-A3A0-01	SLC7A7	ENST00000397532.3,ENST00000397528.4,ENST00000555702.1,ENST00000554517.1,ENST00000556350.1,ENST00000285850.7,ENST00000554061.1,ENST00000397529.2	chr14	23244652:23244749:23245041:23245145:23245403:23245441,	23245042	23245145	23245116	23245116	Frame_Shift_Del	A	-	p.F308fs
LIHC	TCGA-DD-A3A0-01	MMP14	ENST00000311852.6	chr14	23313838:23313989:23314459:23314575:23314916:23316970,	23314460	23314575	23314505	23314505	Frame_Shift_Del	C	-	p.Y449fs
LIHC	TCGA-DD-A3A0-01	LRP10	ENST00000551466.1,ENST00000546834.1,ENST00000359591.4	chr14	23344344:23344454:23344563:23345581:23345897:23346027,	23344564	23345581	23344805	23344805	Frame_Shift_Del	C	-	p.H216fs
LIHC	TCGA-DD-A3A0-01	RBM23	ENST00000399922.2,ENST00000346528.5,ENST00000359890.3,ENST00000557667.1,ENST00000542016.2,ENST00000556838.1,ENST00000553884.1,ENST00000555209.1	chr14	23370788:23370942:23371022:23371092:23371188:23371308,	23371023	23371092	23371030	23371030	Frame_Shift_Del	G	-	p.Q437fs
LIHC	TCGA-DD-A3A0-01	RBM23	ENST00000555714.1,ENST00000553920.1	chr14	23375558:23375577:23377541:23377589:23378691:23378804,23375558:23375577:23377541:23377589:23380536:23380612,	23377542	23377589	23377561	23377561	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A3A0-01	RBM23	ENST00000556984.1	chr14	23375558:23375577:23377541:23377608:23378691:23378804,	23377542	23377608	23377561	23377561	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A3A0-01	RBM23	ENST00000557403.1	chr14	23377541:23377589:23378691:23378804:23380536:23380612,23375558:23375577:23378691:23378804:23380536:23380612,23375558:23375577:23378691:23378804:23388207:23388296,	23378692	23378804	23378792	23378792	Frame_Shift_Del	T	-	p.R27fs
LIHC	TCGA-DD-A3A0-01	SLC7A8	ENST00000529705.2,ENST00000316902.7,ENST00000453702.1	chr14	23607129:23607233:23608632:23608756:23609679:23609833,	23608633	23608756	23608747	23608747	Frame_Shift_Del	G	-	p.P266fs
LIHC	TCGA-DD-A3A0-01	EFS	ENST00000429593.2,ENST00000216733.3,ENST00000351354.3	chr14	23826611:23826869:23828084:23828174:23828525:23828707,	23828085	23828174	23828123	23828123	Frame_Shift_Del	C	-	p.D405fs
LIHC	TCGA-DD-A3A0-01	EFS	ENST00000429593.2,ENST00000216733.3,ENST00000351354.3	chr14	23826611:23826869:23828084:23828174:23828525:23828707,	23828085	23828174	23828143	23828143	Frame_Shift_Del	G	-	p.P398fs
LIHC	TCGA-DD-A3A0-01	EFS	ENST00000216733.3	chr14	23829131:23829248:23829349:23829490:23829763:23830042,	23829350	23829490	23829395	23829395	Frame_Shift_Del	G	-	p.P131fs
LIHC	TCGA-DD-A3A0-01	AP1G2	ENST00000465445.2,ENST00000556966.1,ENST00000397120.3,ENST00000308724.5,ENST00000555510.1,ENST00000535852.2,ENST00000460049.2	chr14	24030617:24030640:24030720:24030844:24031170:24031262,	24030721	24030844	24030740	24030740	Frame_Shift_Del	G	-	p.P613fs
LIHC	TCGA-DD-A3A0-01	AP1G2	ENST00000465445.2,ENST00000556277.1,ENST00000397120.3,ENST00000308724.5,ENST00000535852.2,ENST00000460049.2	chr14	24033824:24033869:24034327:24034408:24034814:24034910,	24034328	24034408	24034330	24034330	Frame_Shift_Del	G	-	p.Q274fs
LIHC	TCGA-DD-A3A0-01	DHRS4L2	ENST00000560276.1,ENST00000335125.6,ENST00000557812.1	chr14	24470592:24470726:24473545:24473601:24475094:24475157,	24473546	24473601	24473562	24473562	Frame_Shift_Del	A	-	p.K229fs
LIHC	TCGA-DD-A3A0-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542776	24542776	Frame_Shift_Del	T	-	p.Y79fs
LIHC	TCGA-DD-A3A0-01	PCK2	ENST00000560106.1,ENST00000559250.1,ENST00000560736.1,ENST00000559837.1,ENST00000561050.1,ENST00000396973.4,ENST00000545054.2,ENST00000558096.1,ENST00000216780.4	chr14	24566100:24566346:24567411:24567596:24567683:24567800,	24567412	24567596	24567509	24567509	Frame_Shift_Del	G	-	p.G126fs
LIHC	TCGA-DD-A3A0-01	DCAF11	ENST00000560046.1,ENST00000326009.5,ENST00000446197.3,ENST00000560614.1,ENST00000559451.1,ENST00000558914.1,ENST00000396941.4,ENST00000561375.1,ENST00000559115.1,ENST00000558638.1	chr14	24586542:24586602:24586876:24586941:24587263:24587307,	24586877	24586941	24586894	24586894	Frame_Shift_Del	C	-	p.C143fs
LIHC	TCGA-DD-A3A0-01	DCAF11	ENST00000558624.1,ENST00000326009.5,ENST00000559144.1,ENST00000557802.1,ENST00000446197.3,ENST00000396936.1,ENST00000558914.1,ENST00000396941.4,ENST00000559115.1	chr14	24588767:24588825:24588919:24589105:24590046:24590200,	24588920	24589105	24588972	24588972	Frame_Shift_Del	C	-	p.S320fs
LIHC	TCGA-DD-A3A0-01	EMC9	ENST00000216799.4,ENST00000560600.1	chr14	24610097:24610174:24610315:24610525:24610646:24610696,	24610316	24610525	24610507	24610507	Frame_Shift_Del	C	-	p.E3fs
LIHC	TCGA-DD-A3A0-01	GMPR2	ENST00000559287.1	chr14	24705301:24705346:24706247:24706358:24706450:24706493,	24706248	24706358	24706325	24706325	Frame_Shift_Del	G	-	p.G190fs
LIHC	TCGA-DD-A3A0-01	GMPR2	ENST00000561035.1,ENST00000456667.3,ENST00000559836.1,ENST00000399440.2,ENST00000557854.1,ENST00000355299.4,ENST00000558865.1,ENST00000561130.1,ENST00000561038.1,ENST00000420554.2,ENST00000558483.1,ENST00000348719.7	chr14	24705301:24705346:24706276:24706358:24706450:24706493,	24706277	24706358	24706325	24706325	Frame_Shift_Del	G	-	p.G190fs
LIHC	TCGA-DD-A3A0-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729847	24729847	Frame_Shift_Del	C	-	p.G189fs
LIHC	TCGA-DD-A3A0-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729862	24729862	Frame_Shift_Del	G	-	p.P184fs
LIHC	TCGA-DD-A3A0-01	RABGGTA	ENST00000560871.1	chr14	24737574:24737626:24737719:24738032:24738116:24738199,	24737720	24738032	24737725	24737725	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-DD-A3A0-01	RABGGTA	ENST00000216840.6,ENST00000559551.1,ENST00000558376.1,ENST00000560998.1,ENST00000399409.3,ENST00000559974.1,ENST00000543002.1	chr14	24737574:24737626:24737719:24737825:24737930:24738032,	24737720	24737825	24737725	24737725	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-DD-A3A0-01	ADCY4	ENST00000310677.4,ENST00000554781.1,ENST00000554577.1,ENST00000396747.3,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24792549:24792660:24793267:24793405:24793512:24793597,	24793268	24793405	24793385	24793385	Frame_Shift_Del	G	-	p.P643fs
LIHC	TCGA-DD-A3A0-01	ADCY4	ENST00000310677.4,ENST00000554781.1,ENST00000554577.1,ENST00000396747.3,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24793267:24793405:24793512:24793597:24794582:24794680,	24793513	24793597	24793537	24793537	Frame_Shift_Del	A	-	p.F628fs
LIHC	TCGA-DD-A3A0-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845517	24845517	Frame_Shift_Del	C	-	p.P755fs
LIHC	TCGA-DD-A3A0-01	NFATC4	ENST00000554591.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000554966.1,ENST00000554050.1,ENST00000554473.1,ENST00000553469.1	chr14	24845279:24845307:24845499:24845760:24846843:24846911,	24845500	24845760	24845517	24845517	Frame_Shift_Del	C	-	p.P755fs
LIHC	TCGA-DD-A3A0-01	NFATC4	ENST00000554344.1,ENST00000555802.1,ENST00000553879.1,ENST00000555453.1,ENST00000556279.1,ENST00000250373.4,ENST00000554655.1,ENST00000556759.1,ENST00000555590.1	chr14	24845279:24845307:24845499:24846084:24846843:24846911,	24845500	24846084	24845601	24845601	Frame_Shift_Del	C	-	p.P784fs
LIHC	TCGA-DD-A3A0-01	NFATC4	ENST00000554591.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000554966.1,ENST00000554050.1,ENST00000554473.1,ENST00000553469.1	chr14	24845279:24845307:24845499:24845760:24846843:24846911,	24845500	24845760	24845601	24845601	Frame_Shift_Del	C	-	p.P784fs
LIHC	TCGA-DD-A3A0-01	GZMB	ENST00000415355.3,ENST00000530830.1,ENST00000216341.4,ENST00000382542.1	chr14	25101063:25101324:25101529:25101665:25102120:25102268,	25101530	25101665	25101580	25101580	Frame_Shift_Del	G	-	p.H97fs
LIHC	TCGA-DD-A3A0-01	GZMB	ENST00000526004.1,ENST00000554242.1	chr14	25101063:25101324:25102120:25102268:25103311:25103366,	25102121	25102268	25102253	25102253	Frame_Shift_Del	C	-	p.G24fs
LIHC	TCGA-DD-A3A0-01	STXBP6	ENST00000323944.5,ENST00000358326.2	chr14	25326232:25326363:25443870:25444056:25518412:25518505,25326232:25326363:25443870:25444056:25479730:25479846,25326232:25326363:25443870:25444056:25519083:25519100,	25443871	25444056	25443989	25443989	Frame_Shift_Del	A	-	p.F12fs
LIHC	TCGA-DD-A3A0-01	NOVA1	ENST00000344429.5,ENST00000465357.2,ENST00000547619.1,ENST00000539517.2,ENST00000574031.1	chr14	26949182:26949349:27064615:27064759:27066506:27066642,	27064616	27064759	27064622	27064622	Frame_Shift_Del	A	-	p.Y92fs
LIHC	TCGA-DD-A3A0-01	SCFD1	ENST00000484733.2,ENST00000556768.1,ENST00000554486.1,ENST00000463622.2,ENST00000458591.2,ENST00000421551.3,ENST00000544052.2,ENST00000396629.2,ENST00000311943.7,ENST00000541123.1,ENST00000555259.1	chr14	31169396:31169464:31171501:31171581:31175028:31175091,	31171502	31171581	31171549	31171549	Frame_Shift_Del	C	-	p.N486fs
LIHC	TCGA-DD-A3A0-01	COCH	ENST00000556908.1,ENST00000216361.4,ENST00000396618.3,ENST00000553833.1,ENST00000475087.1,ENST00000460581.2	chr14	31346779:31346934:31348016:31348150:31348628:31348691,	31348017	31348150	31348036	31348036	Frame_Shift_Del	G	-	p.G88fs
LIHC	TCGA-DD-A3A0-01	STRN3	ENST00000357479.5	chr14	31382729:31382863:31398406:31398517:31404368:31404506,31388171:31388312:31398406:31398517:31404368:31404506,	31398407	31398517	31398482	31398482	Frame_Shift_Del	C	-	p.D342fs
LIHC	TCGA-DD-A3A0-01	HECTD1	ENST00000553957.1,ENST00000553700.1,ENST00000399332.1	chr14	31602714:31602881:31604077:31604401:31604681:31604821,	31604078	31604401	31604153	31604153	Frame_Shift_Del	A	-	p.F1168fs
LIHC	TCGA-DD-A3A0-01	HEATR5A	ENST00000439727.1,ENST00000543095.2,ENST00000389961.3	chr14	31765114:31765269:31774110:31774383:31775937:31776085,31771500:31771725:31774110:31774383:31775937:31776016,	31774111	31774383	31774341	31774341	Frame_Shift_Del	C	-	p.G1670fs
LIHC	TCGA-DD-A3A0-01	HEATR5A	ENST00000538864.2,ENST00000439727.1,ENST00000543095.2,ENST00000439348.1,ENST00000389961.3	chr14	31790704:31790886:31792770:31793010:31795368:31795548,	31792771	31793010	31792783	31792783	Frame_Shift_Del	T	-	p.R1259fs
LIHC	TCGA-DD-A3A0-01	HEATR5A	ENST00000538864.2,ENST00000439727.1,ENST00000543095.2,ENST00000439348.1,ENST00000389961.3	chr14	31790704:31790886:31792770:31793010:31795368:31795548,	31792771	31793010	31792814	31792814	Frame_Shift_Del	A	-	p.F1248fs
LIHC	TCGA-DD-A3A0-01	HEATR5A	ENST00000538864.2,ENST00000439727.1,ENST00000543095.2,ENST00000439348.1,ENST00000389961.3	chr14	31790704:31790886:31792770:31793010:31795368:31795548,	31792771	31793010	31792916	31792916	Frame_Shift_Del	T	-	p.K1214fs
LIHC	TCGA-DD-A3A0-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560273	32560273	Frame_Shift_Del	T	-	p.I133fs
LIHC	TCGA-DD-A3A0-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560871	32560871	Frame_Shift_Del	A	-	p.R332fs
LIHC	TCGA-DD-A3A0-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562858	32562858	Frame_Shift_Del	G	-	p.G995fs
LIHC	TCGA-DD-A3A0-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563341	32563341	Frame_Shift_Del	A	-	p.K1156fs
LIHC	TCGA-DD-A3A0-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563578	32563578	Frame_Shift_Del	A	-	p.K1235fs
LIHC	TCGA-DD-A3A0-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000551008.1,ENST00000341321.4,ENST00000346562.2,ENST00000547068.1,ENST00000357798.5,ENST00000548645.1	chr14	33836397:33836474:34029326:34029416:34145416:34145591,	34029327	34029416	34029369	34029369	Frame_Shift_Del	T	-	p.F139fs
LIHC	TCGA-DD-A3A0-01	EGLN3	ENST00000553215.1,ENST00000556785.1,ENST00000250457.3	chr14	34394716:34395128:34396165:34396239:34398281:34398418,	34396166	34396239	34396202	34396202	Frame_Shift_Del	T	-	p.R218fs
LIHC	TCGA-DD-A3A0-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3,ENST00000557265.1,ENST00000556712.1,ENST00000555416.1	chr14	35055435:35055511:35062250:35062356:35066755:35066851,	35062251	35062356	35062321	35062321	Frame_Shift_Del	A	-	p.F100fs
LIHC	TCGA-DD-A3A0-01	PPP2R3C	ENST00000555219.1	chr14	35554741:35554984:35557156:35557216:35564253:35564390,	35557157	35557216	35557174	35557174	Frame_Shift_Del	A	-	p.S386fs
LIHC	TCGA-DD-A3A0-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000554704.1,ENST00000307138.6,ENST00000554652.1	chr14	36211573:36211771:36217790:36218030:36219687:36219735,	36217791	36218030	36217990	36217990	Frame_Shift_Del	T	-	p.N351fs
LIHC	TCGA-DD-A3A0-01	MBIP	ENST00000604336.1,ENST00000359527.7,ENST00000603139.1,ENST00000318473.7,ENST00000605579.1,ENST00000416007.4	chr14	36780782:36780931:36781164:36781230:36783717:36783814,	36781165	36781230	36781177	36781177	Frame_Shift_Del	T	-	p.S209fs
LIHC	TCGA-DD-A3A0-01	SLC25A21	ENST00000331299.5,ENST00000555449.1	chr14	37153032:37153085:37153948:37154130:37180522:37180687,	37153949	37154130	37153977	37153977	Frame_Shift_Del	T	-	p.T253fs
LIHC	TCGA-DD-A3A0-01	SLC25A21	ENST00000331299.5,ENST00000546428.2,ENST00000555449.1	chr14	37194774:37194882:37198711:37198771:37203711:37203778,	37198712	37198771	37198767	37198767	Frame_Shift_Del	A	-	p.F92fs
LIHC	TCGA-DD-A3A0-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39543618:39543734:39545138:39545297:39554965:39555110,	39545139	39545297	39545235	39545235	Frame_Shift_Del	C	-	p.G95fs
LIHC	TCGA-DD-A3A0-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39545138:39545297:39554965:39555110:39556132:39556212,	39554966	39555110	39554998	39554998	Frame_Shift_Del	C	-	p.V64fs
LIHC	TCGA-DD-A3A0-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000555017.1,ENST00000556092.1	chr14	39560861:39560917:39561744:39561831:39562390:39562448,	39561745	39561831	39561768	39561768	Frame_Shift_Del	A	-	p.S116fs
LIHC	TCGA-DD-A3A0-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000555017.1,ENST00000556092.1	chr14	39560861:39560917:39561744:39561831:39562390:39562448,	39561745	39561831	39561779	39561779	Frame_Shift_Del	A	-	p.L111fs
LIHC	TCGA-DD-A3A0-01	SEC23A	ENST00000307712.6,ENST00000556092.1,ENST00000548032.2,ENST00000545328.2	chr14	39562390:39562448:39565101:39565343:39572235:39572279,	39565102	39565343	39565291	39565291	Frame_Shift_Del	T	-	p.N11fs
LIHC	TCGA-DD-A3A0-01	TRAPPC6B	ENST00000469361.1,ENST00000555269.1,ENST00000330149.5,ENST00000557764.1	chr14	39619321:39619585:39620949:39621043:39623414:39623498,	39620950	39621043	39620986	39620986	Frame_Shift_Del	T	-	p.S137fs
LIHC	TCGA-DD-A3A0-01	FBXO33	ENST00000298097.7	chr14	39868769:39868991:39870379:39871065:39871604:39871715,	39870380	39871065	39870557	39870557	Frame_Shift_Del	A	-	p.S407fs
LIHC	TCGA-DD-A3A0-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42355842	42355842	Frame_Shift_Del	T	-	p.L5fs
LIHC	TCGA-DD-A3A0-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42357136	42357136	Frame_Shift_Del	T	-	p.N436fs
LIHC	TCGA-DD-A3A0-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42360650	42360650	Frame_Shift_Del	C	-	p.T528fs
LIHC	TCGA-DD-A3A0-01	PRPF39	ENST00000554081.1,ENST00000477626.1,ENST00000554439.1,ENST00000424478.1,ENST00000355765.6,ENST00000554429.1	chr14	45576653:45576819:45577617:45577725:45578818:45578983,	45577618	45577725	45577702	45577702	Frame_Shift_Del	A	-	p.K330fs
LIHC	TCGA-DD-A3A0-01	FKBP3	ENST00000396062.3,ENST00000216330.3	chr14	45598996:45599104:45599901:45600003:45603551:45603686,	45599902	45600003	45599911	45599911	Frame_Shift_Del	A	-	p.F67fs
LIHC	TCGA-DD-A3A0-01	FANCM	ENST00000267430.5,ENST00000556036.1,ENST00000542564.2	chr14	45618039:45618198:45620599:45620731:45623122:45623255,	45620600	45620731	45620708	45620708	Frame_Shift_Del	A	-	p.K343fs
LIHC	TCGA-DD-A3A0-01	FANCM	ENST00000267430.5,ENST00000542564.2,ENST00000556250.1	chr14	45658004:45658565:45665374:45665750:45667846:45668038,	45665375	45665750	45665650	45665650	Frame_Shift_Del	A	-	p.L1872fs
LIHC	TCGA-DD-A3A0-01	MIS18BP1	ENST00000310806.4	chr14	45675285:45675373:45679582:45679731:45686221:45686382,	45679583	45679731	45679632	45679632	Frame_Shift_Del	T	-	p.T1035fs
LIHC	TCGA-DD-A3A0-01	MIS18BP1	ENST00000310806.4,ENST00000554093.1,ENST00000469020.1	chr14	45679665:45679731:45686221:45686382:45687484:45687635,	45686222	45686382	45686256	45686256	Frame_Shift_Del	A	-	p.F990fs
LIHC	TCGA-DD-A3A0-01	MIS18BP1	ENST00000310806.4,ENST00000554093.1,ENST00000469020.1	chr14	45679665:45679731:45686221:45686382:45687484:45687635,	45686222	45686382	45686353	45686353	Frame_Shift_Del	T	-	p.T958fs
LIHC	TCGA-DD-A3A0-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693324	45693324	Frame_Shift_Del	T	-	p.E823fs
LIHC	TCGA-DD-A3A0-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693813	45693813	Frame_Shift_Del	T	-	p.K659fs
LIHC	TCGA-DD-A3A0-01	POLE2	ENST00000554396.1,ENST00000539565.2,ENST00000556584.1,ENST00000216367.5	chr14	50120872:50120932:50121501:50121556:50121722:50121782,	50121502	50121556	50121541	50121541	Frame_Shift_Del	A	-	p.L319fs
LIHC	TCGA-DD-A3A0-01	KLHDC1	ENST00000556392.1,ENST00000359332.2	chr14	50190591:50190670:50192403:50192487:50195643:50195727,	50192404	50192487	50192420	50192420	Frame_Shift_Del	G	-	p.W167fs
LIHC	TCGA-DD-A3A0-01	KLHDC2	ENST00000556559.1,ENST00000554589.1,ENST00000298307.5,ENST00000555443.1,ENST00000554115.1	chr14	50246930:50247040:50247420:50247493:50249087:50249175,	50247421	50247493	50247447	50247447	Frame_Shift_Del	A	-	p.K304fs
LIHC	TCGA-DD-A3A0-01	NEMF	ENST00000557380.1,ENST00000554626.1,ENST00000555970.1,ENST00000545773.1,ENST00000556672.1,ENST00000554162.1,ENST00000546046.1	chr14	50318280:50318383:50318524:50318593:50319412:50319498,	50318525	50318593	50318565	50318565	Frame_Shift_Del	A	-	p.Y30fs
LIHC	TCGA-DD-A3A0-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50616725:50616948:50619787:50619891:50623716:50623839,	50619788	50619891	50619851	50619851	Frame_Shift_Del	A	-	p.Y700fs
LIHC	TCGA-DD-A3A0-01	SOS2	ENST00000216373.5,ENST00000543680.1,ENST00000555794.1	chr14	50625282:50625364:50626148:50626804:50628199:50628327,	50626149	50626804	50626724	50626724	Frame_Shift_Del	T	-	p.N426fs
LIHC	TCGA-DD-A3A0-01	CDKL1	ENST00000216378.2,ENST00000395834.1,ENST00000528197.1	chr14	50808849:50808940:50811703:50811776:50825745:50825867,	50811704	50811776	50811718	50811718	Frame_Shift_Del	A	-	p.C118fs
LIHC	TCGA-DD-A3A0-01	MAP4K5	ENST00000554990.1,ENST00000013125.4	chr14	50885242:50886824:50889838:50889894:50892624:50892695,	50889839	50889894	50889888	50889888	Frame_Shift_Del	G	-	p.Q802fs
LIHC	TCGA-DD-A3A0-01	MAP4K5	ENST00000554990.1,ENST00000013125.4	chr14	50910656:50910754:50911758:50911912:50912796:50912839,	50911759	50911912	50911865	50911865	Frame_Shift_Del	T	-	p.K411fs
LIHC	TCGA-DD-A3A0-01	ATL1	ENST00000555960.1,ENST00000357032.3,ENST00000354525.4,ENST00000358385.6,ENST00000441560.2	chr14	51026848:51027017:51054548:51054796:51057658:51057675,	51054549	51054796	51054635	51054635	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-DD-A3A0-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51210133:51210247:51210960:51211083:51214709:51214823,	51210961	51211083	51211044	51211044	Frame_Shift_Del	T	-	p.I1702fs
LIHC	TCGA-DD-A3A0-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223484	51223484	Frame_Shift_Del	T	-	p.R1422fs
LIHC	TCGA-DD-A3A0-01	NIN	ENST00000389868.3,ENST00000382043.4	chr14	51221459:51221585:51226574:51227077:51228507:51228629,	51226575	51227077	51226868	51226868	Frame_Shift_Del	T	-	p.K702fs
LIHC	TCGA-DD-A3A0-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000496749.1,ENST00000476352.1,ENST00000324330.9,ENST00000245441.5,ENST00000463419.1,ENST00000382043.4	chr14	51273454:51273536:51288591:51288795:51297181:51297197,	51288592	51288795	51288635	51288635	Frame_Shift_Del	G	-	p.P47fs
LIHC	TCGA-DD-A3A0-01	NIN	ENST00000453401.2	chr14	51273454:51273536:51288591:51288718:51297181:51297197,	51288592	51288718	51288635	51288635	Frame_Shift_Del	G	-	p.P47fs
LIHC	TCGA-DD-A3A0-01	TRIM9	ENST00000298355.3	chr14	51448571:51448821:51464767:51464906:51467400:51467546,	51464768	51464906	51464892	51464892	Frame_Shift_Del	C	-	p.G493fs
LIHC	TCGA-DD-A3A0-01	NID2	ENST00000556572.1,ENST00000541773.1,ENST00000216286.5	chr14	52481771:52481993:52485778:52486012:52486776:52486896,	52485779	52486012	52485893	52485893	Frame_Shift_Del	G	-	p.L972fs
LIHC	TCGA-DD-A3A0-01	NID2	ENST00000541773.1,ENST00000216286.5	chr14	52520737:52521039:52526841:52527074:52534575:52534881,	52526842	52527074	52526893	52526893	Frame_Shift_Del	C	-	p.G239fs
LIHC	TCGA-DD-A3A0-01	TXNDC16	ENST00000281741.4	chr14	52922158:52922180:52923807:52923892:52936754:52936891,	52923808	52923892	52923814	52923814	Frame_Shift_Del	A	-	p.L568fs
LIHC	TCGA-DD-A3A0-01	TXNDC16	ENST00000281741.4	chr14	52922158:52922180:52923807:52923892:52936754:52936891,	52923808	52923892	52923855	52923855	Frame_Shift_Del	T	-	p.K552fs
LIHC	TCGA-DD-A3A0-01	PSMC6	ENST00000445930.2,ENST00000606149.1	chr14	53184798:53184860:53184946:53185070:53190682:53190754,53184798:53184860:53184946:53185070:53185694:53185756,	53184947	53185070	53185056	53185056	Frame_Shift_Del	A	-	p.E248fs
LIHC	TCGA-DD-A3A0-01	CDKN3	ENST00000556102.2,ENST00000335183.6,ENST00000541304.1,ENST00000556305.1,ENST00000458126.2,ENST00000543789.2	chr14	54866643:54866694:54868241:54868297:54875462:54875507,	54868242	54868297	54868273	54868273	Frame_Shift_Del	T	-	p.F42fs
LIHC	TCGA-DD-A3A0-01	CDKN3	ENST00000556102.2,ENST00000335183.6,ENST00000541304.1,ENST00000556305.1,ENST00000458126.2,ENST00000543789.2	chr14	54866643:54866694:54868241:54868297:54875462:54875507,	54868242	54868297	54868281	54868281	Frame_Shift_Del	T	-	p.G44fs
LIHC	TCGA-DD-A3A0-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529855	55529855	Frame_Shift_Del	C	-	p.P180fs
LIHC	TCGA-DD-A3A0-01	LGALS3	ENST00000553755.1	chr14	55595977:55596018:55604762:55605086:55606992:55607081,	55604763	55605086	55604892	55604892	Frame_Shift_Del	C	-	p.P51fs
LIHC	TCGA-DD-A3A0-01	LGALS3	ENST00000556322.1,ENST00000556438.2,ENST00000554715.1,ENST00000553755.1,ENST00000254301.9	chr14	55604762:55605086:55606992:55607081:55609301:55609396,	55606993	55607081	55607020	55607020	Frame_Shift_Del	G	-	p.G125fs
LIHC	TCGA-DD-A3A0-01	DLGAP5	ENST00000395425.2,ENST00000247191.2	chr14	55621334:55621524:55625239:55625459:55629688:55629793,	55625240	55625459	55625294	55625294	Frame_Shift_Del	T	-	p.I607fs
LIHC	TCGA-DD-A3A0-01	DLGAP5	ENST00000395425.2,ENST00000247191.2	chr14	55621334:55621524:55625239:55625459:55629688:55629793,	55625240	55625459	55625371	55625371	Frame_Shift_Del	T	-	p.N581fs
LIHC	TCGA-DD-A3A0-01	DLGAP5	ENST00000247191.2	chr14	55650323:55650471:55655659:55655898:55658180:55658262,	55655660	55655898	55655831	55655831	Frame_Shift_Del	T	-	p.I23fs
LIHC	TCGA-DD-A3A0-01	KTN1	ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56047041:56047072:56078736:56079289:56083234:56083372,56068509:56068598:56078736:56079289:56083234:56083372,	56078737	56079289	56078773	56078773	Frame_Shift_Del	T	-	p.F3fs
LIHC	TCGA-DD-A3A0-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000416613.1,ENST00000395314.3,ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56094629:56094746:56096674:56096815:56099952:56100059,	56096675	56096815	56096745	56096745	Frame_Shift_Del	A	-	p.E384fs
LIHC	TCGA-DD-A3A0-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000416613.1,ENST00000395314.3,ENST00000459737.1,ENST00000395308.1,ENST00000395311.1	chr14	56103166:56103254:56103915:56104082:56104496:56104565,	56103916	56104082	56104041	56104041	Frame_Shift_Del	A	-	p.K559fs
LIHC	TCGA-DD-A3A0-01	TMEM260	ENST00000539559.2,ENST00000538838.1,ENST00000557657.1,ENST00000556929.1,ENST00000261556.6,ENST00000536419.1,ENST00000557626.1,ENST00000556422.1,ENST00000555497.1	chr14	57072287:57072401:57075823:57076003:57078962:57079003,	57075824	57076003	57075959	57075959	Frame_Shift_Del	T	-	p.F258fs
LIHC	TCGA-DD-A3A0-01	NAA30	ENST00000556492.1	chr14	57857305:57857423:57857674:57858446:57863469:57863593,	57857675	57858446	57858066	57858066	Frame_Shift_Del	G	-	p.G131fs
LIHC	TCGA-DD-A3A0-01	ACTR10	ENST00000555965.1,ENST00000254286.4,ENST00000554402.2,ENST00000545307.2,ENST00000555229.1,ENST00000557711.1,ENST00000554790.1	chr14	58690355:58690419:58690500:58690574:58697116:58697198,	58690501	58690574	58690513	58690513	Frame_Shift_Del	C	-	p.P244fs
LIHC	TCGA-DD-A3A0-01	ACTR10	ENST00000557583.1	chr14	58686411:58686447:58690339:58690574:58697118:58697194,	58690340	58690574	58690513	58690513	Frame_Shift_Del	C	-	p.P244fs
LIHC	TCGA-DD-A3A0-01	PSMA3	ENST00000557508.1,ENST00000557290.1,ENST00000553677.1,ENST00000216455.4,ENST00000412908.2	chr14	58737135:58737203:58737651:58737716:58738568:58738722,	58737652	58737716	58737705	58737705	Frame_Shift_Del	A	-	p.K238fs
LIHC	TCGA-DD-A3A0-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831137	58831137	Frame_Shift_Del	A	-	p.E777fs
LIHC	TCGA-DD-A3A0-01	KIAA0586	ENST00000556134.1	chr14	58894119:58894355:58894989:58895181:58896080:58896151,	58894990	58895181	58895013	58895013	Frame_Shift_Del	A	-	p.K25fs
LIHC	TCGA-DD-A3A0-01	KIAA0586	ENST00000556134.1	chr14	58894119:58894355:58894989:58895181:58896080:58896151,	58894990	58895181	58895062	58895062	Frame_Shift_Del	A	-	p.Q39fs
LIHC	TCGA-DD-A3A0-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58937330:58937441:58938916:58938997:58941324:58941515,	58938917	58938997	58938978	58938978	Frame_Shift_Del	A	-	p.E828fs
LIHC	TCGA-DD-A3A0-01	DAAM1	ENST00000557029.1,ENST00000360909.3,ENST00000553307.1,ENST00000557628.1,ENST00000351081.1,ENST00000395125.1	chr14	59826114:59826222:59827519:59827580:59830368:59830500,	59827520	59827580	59827563	59827563	Frame_Shift_Del	T	-	p.L903fs
LIHC	TCGA-DD-A3A0-01	PPM1A	ENST00000325658.3	chr14	60716377:60716395:60749401:60750255:60752341:60752459,60717148:60717199:60749401:60750255:60752341:60752459,	60749402	60750255	60750182	60750182	Frame_Shift_Del	T	-	p.V254fs
LIHC	TCGA-DD-A3A0-01	MNAT1	ENST00000261245.4,ENST00000556525.1,ENST00000539616.2	chr14	61264804:61264878:61275042:61275146:61278704:61278845,	61275043	61275146	61275068	61275068	Frame_Shift_Del	T	-	p.D114fs
LIHC	TCGA-DD-A3A0-01	MNAT1	ENST00000539616.2	chr14	61275042:61275146:61278704:61278845:61346431:61346553,	61278705	61278845	61278830	61278830	Frame_Shift_Del	T	-	p.A182fs
LIHC	TCGA-DD-A3A0-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442678	61442678	Frame_Shift_Del	T	-	p.N320fs
LIHC	TCGA-DD-A3A0-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442684	61442684	Frame_Shift_Del	T	-	p.K319fs
LIHC	TCGA-DD-A3A0-01	TRMT5	ENST00000261249.6	chr14	61438168:61441912:61442192:61442844:61444231:61444356,	61442193	61442844	61442739	61442739	Frame_Shift_Del	C	-	p.D300fs
LIHC	TCGA-DD-A3A0-01	SLC38A6	ENST00000528350.1	chr14	61497162:61497241:61504342:61504401:61509864:61509926,	61504343	61504401	61504372	61504372	Frame_Shift_Del	T	-	p.F201fs
LIHC	TCGA-DD-A3A0-01	SLC38A6	ENST00000451406.1,ENST00000529212.1,ENST00000525723.2,ENST00000491344.3,ENST00000267488.4,ENST00000456840.2,ENST00000354886.2,ENST00000529345.2	chr14	61512824:61512885:61517229:61517354:61518504:61518649,	61517230	61517354	61517326	61517326	Frame_Shift_Del	T	-	p.L342fs
LIHC	TCGA-DD-A3A0-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000554584.1,ENST00000557005.1	chr14	64469741:64470048:64473760:64473940:64476683:64476834,	64473761	64473940	64473868	64473868	Frame_Shift_Del	A	-	p.E1502fs
LIHC	TCGA-DD-A3A0-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000554584.1,ENST00000557005.1	chr14	64473760:64473940:64476683:64476834:64483190:64483349,	64476684	64476834	64476820	64476820	Frame_Shift_Del	A	-	p.K1572fs
LIHC	TCGA-DD-A3A0-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4	chr14	64497733:64498075:64514717:64514873:64516328:64516594,	64514718	64514873	64514778	64514778	Frame_Shift_Del	A	-	p.K2428fs
LIHC	TCGA-DD-A3A0-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64596765:64596966:64598982:64599156:64600786:64600918,	64598983	64599156	64599100	64599100	Frame_Shift_Del	A	-	p.K1205fs
LIHC	TCGA-DD-A3A0-01	SYNE2	ENST00000357395.3,ENST00000555022.1,ENST00000358025.3,ENST00000553289.1,ENST00000554805.1,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64685925:64686128:64687154:64687355:64688293:64688422,	64687155	64687355	64687238	64687238	Frame_Shift_Del	C	-	p.S3010fs
LIHC	TCGA-DD-A3A0-01	PPP1R36	ENST00000298705.1,ENST00000467261.1	chr14	65035066:65035165:65041172:65041307:65053554:65053597,	65041173	65041307	65041266	65041266	Frame_Shift_Del	G	-	p.L209fs
LIHC	TCGA-DD-A3A0-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66188492:66188739:66190864:66191041:66199948:66200099,	66190865	66191041	66190960	66190960	Frame_Shift_Del	T	-	p.L393fs
LIHC	TCGA-DD-A3A0-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000557678.1,ENST00000305960.9,ENST00000543237.1,ENST00000555503.1	chr14	67610078:67610166:67626131:67626205:67631878:67631943,	67626132	67626205	67626190	67626190	Frame_Shift_Del	T	-	p.V632fs
LIHC	TCGA-DD-A3A0-01	MPP5	ENST00000261681.4,ENST00000555925.1	chr14	67779243:67779427:67783548:67783620:67784124:67784196,	67783549	67783620	67783573	67783573	Frame_Shift_Del	A	-	p.E417fs
LIHC	TCGA-DD-A3A0-01	MPP5	ENST00000261681.4,ENST00000555925.1	chr14	67779243:67779427:67783548:67783620:67784124:67784196,	67783549	67783620	67783612	67783612	Frame_Shift_Del	A	-	p.E430fs
LIHC	TCGA-DD-A3A0-01	PLEKHH1	ENST00000329153.5	chr14	68023985:68024135:68026324:68026408:68028670:68028752,	68026325	68026408	68026362	68026362	Frame_Shift_Del	A	-	p.E126fs
LIHC	TCGA-DD-A3A0-01	PLEKHH1	ENST00000329153.5	chr14	68028670:68028752:68028853:68029611:68035854:68035933,	68028854	68029611	68028889	68028889	Frame_Shift_Del	C	-	p.P182fs
LIHC	TCGA-DD-A3A0-01	PLEKHH1	ENST00000329153.5	chr14	68028670:68028752:68028853:68029611:68035854:68035933,	68028854	68029611	68029050	68029050	Frame_Shift_Del	C	-	p.S234fs
LIHC	TCGA-DD-A3A0-01	PLEKHH1	ENST00000329153.5	chr14	68028670:68028752:68028853:68029611:68035854:68035933,	68028854	68029611	68029141	68029141	Frame_Shift_Del	C	-	p.P265fs
LIHC	TCGA-DD-A3A0-01	ZFYVE26	ENST00000554523.1,ENST00000555452.1,ENST00000554557.1,ENST00000347230.4	chr14	68251050:68251153:68251775:68251994:68252574:68252739,	68251776	68251994	68251965	68251965	Frame_Shift_Del	C	-	p.V1112fs
LIHC	TCGA-DD-A3A0-01	ZFYVE26	ENST00000554523.1,ENST00000557407.1,ENST00000555452.1,ENST00000347230.4	chr14	68270817:68270981:68271933:68272022:68272170:68272335,	68271934	68272022	68271974	68271974	Frame_Shift_Del	C	-	p.A411fs
LIHC	TCGA-DD-A3A0-01	ACTN1	ENST00000193403.6,ENST00000438964.2,ENST00000376839.3,ENST00000556083.1,ENST00000394419.4,ENST00000538545.2	chr14	69349174:69349309:69349589:69349772:69350884:69351012,	69349590	69349772	69349732	69349732	Frame_Shift_Del	G	-	p.P559fs
LIHC	TCGA-DD-A3A0-01	ACTN1	ENST00000553779.1,ENST00000556571.1,ENST00000554508.1,ENST00000556433.1,ENST00000193403.6,ENST00000555616.1,ENST00000438964.2,ENST00000554158.1,ENST00000376839.3,ENST00000553370.1,ENST00000394419.4,ENST00000538545.2	chr14	69376738:69376759:69378872:69378959:69387722:69387755,	69378873	69378959	69378946	69378946	Frame_Shift_Del	C	-	p.G118fs
LIHC	TCGA-DD-A3A0-01	SLC39A9	ENST00000336643.5,ENST00000555245.1,ENST00000556605.1,ENST00000555840.1	chr14	69890810:69890919:69908785:69908983:69921528:69921614,69890810:69890919:69908785:69908983:69919957:69920017,	69908786	69908983	69908930	69908930	Frame_Shift_Del	T	-	p.V117fs
LIHC	TCGA-DD-A3A0-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634758	70634758	Frame_Shift_Del	C	-	p.V128fs
LIHC	TCGA-DD-A3A0-01	SYNJ2BP	ENST00000256366.4	chr14	70839204:70839848:70842392:70842488:70855186:70855323,	70842393	70842488	70842469	70842469	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A3A0-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054714	72054714	Frame_Shift_Del	A	-	p.Q42fs
LIHC	TCGA-DD-A3A0-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054805	72054805	Frame_Shift_Del	A	-	p.P72fs
LIHC	TCGA-DD-A3A0-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72055732	72055732	Frame_Shift_Del	T	-	p.S381fs
LIHC	TCGA-DD-A3A0-01	RGS6	ENST00000434263.2,ENST00000343854.6,ENST00000556437.1,ENST00000553530.1,ENST00000555571.1,ENST00000404301.2,ENST00000402788.2,ENST00000406236.4,ENST00000554474.1,ENST00000407322.4,ENST00000554782.1,ENST00000553525.1,ENST00000355512.6	chr14	72976861:72976987:72985058:72985245:73002893:73002983,	72985059	72985245	72985093	72985093	Frame_Shift_Del	C	-	p.P376fs
LIHC	TCGA-DD-A3A0-01	ZFYVE1	ENST00000394207.2,ENST00000555072.1,ENST00000553891.1,ENST00000556143.1,ENST00000318876.5	chr14	73444844:73444942:73445568:73445677:73448496:73448603,	73445569	73445677	73445661	73445661	Frame_Shift_Del	T	-	p.S443fs
LIHC	TCGA-DD-A3A0-01	PSEN1	ENST00000553855.1,ENST00000394164.1,ENST00000261970.3,ENST00000324501.5,ENST00000406768.1,ENST00000557511.1,ENST00000555386.1,ENST00000357710.4,ENST00000344094.3	chr14	73640273:73640415:73653560:73653628:73659351:73659572,	73653561	73653628	73653606	73653606	Frame_Shift_Del	T	-	p.F177fs
LIHC	TCGA-DD-A3A0-01	PAPLN	ENST00000340738.5,ENST00000216658.5,ENST00000555445.1,ENST00000555123.1,ENST00000554301.1,ENST00000427855.1,ENST00000381166.3	chr14	73719356:73719483:73720461:73720669:73721220:73721403,	73720462	73720669	73720618	73720618	Frame_Shift_Del	G	-	p.Q417fs
LIHC	TCGA-DD-A3A0-01	PAPLN	ENST00000555445.1	chr14	73727863:73728002:73729105:73729535:73730352:73730490,	73729106	73729535	73729140	73729140	Frame_Shift_Del	G	-	p.V776fs
LIHC	TCGA-DD-A3A0-01	PAPLN	ENST00000340738.5,ENST00000555123.1,ENST00000554301.1,ENST00000427855.1,ENST00000381166.3	chr14	73727873:73728002:73729057:73729535:73730352:73730490,	73729058	73729535	73729140	73729140	Frame_Shift_Del	G	-	p.V776fs
LIHC	TCGA-DD-A3A0-01	NUMB	ENST00000555238.1,ENST00000555307.1,ENST00000557597.1,ENST00000356296.4,ENST00000359560.3,ENST00000555859.1,ENST00000555394.1,ENST00000554394.1,ENST00000355058.3,ENST00000535282.1,ENST00000554546.1,ENST00000556772.1	chr14	73743916:73744001:73753817:73754022:73759441:73759582,73750961:73751082:73753817:73754022:73759441:73759582,	73753818	73754022	73753987	73753987	Frame_Shift_Del	A	-	p.F18fs
LIHC	TCGA-DD-A3A0-01	HEATR4	ENST00000560393.1,ENST00000334988.2,ENST00000553558.1	chr14	73959769:73959828:73961931:73962091:73963304:73963383,	73961932	73962091	73962023	73962023	Frame_Shift_Del	T	-	p.K898fs
LIHC	TCGA-DD-A3A0-01	ELMSAN1	ENST00000451078.1,ENST00000476562.1,ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74187999:74188212:74189400:74189550:74191974:74192042,	74189401	74189550	74189457	74189457	Frame_Shift_Del	C	-	p.D890fs
LIHC	TCGA-DD-A3A0-01	FAM161B	ENST00000534936.1,ENST00000286544.3	chr14	74409071:74409418:74411037:74411588:74412988:74413308,	74411038	74411588	74411050	74411050	Frame_Shift_Del	C	-	p.D368fs
LIHC	TCGA-DD-A3A0-01	ALDH6A1	ENST00000554501.1	chr14	74535562:74535684:74537897:74538363:74538598:74538677,	74537898	74538363	74537936	74537936	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A3A0-01	ALDH6A1	ENST00000350259.4,ENST00000553458.1	chr14	74535562:74535684:74537897:74538200:74538598:74538677,	74537898	74538200	74537936	74537936	Frame_Shift_Del	G	-	p.P231fs
LIHC	TCGA-DD-A3A0-01	ABCD4	ENST00000475240.1,ENST00000554453.1	chr14	74764678:74764772:74766852:74766971:74769577:74769613,74766250:74766378:74766852:74766971:74769577:74769613,74763035:74763152:74766852:74766971:74769577:74769613,	74766853	74766971	74766918	74766918	Frame_Shift_Del	A	-	p.L31fs
LIHC	TCGA-DD-A3A0-01	NPC2	ENST00000556009.1,ENST00000238633.2,ENST00000555619.1,ENST00000434013.2,ENST00000557510.1,ENST00000553490.1	chr14	74947413:74947482:74951117:74951290:74953031:74953139,	74951118	74951290	74951226	74951226	Frame_Shift_Del	A	-	p.F85fs
LIHC	TCGA-DD-A3A0-01	LTBP2	ENST00000556206.1	chr14	74973408:74973526:74973881:74974013:74974675:74974798,74973408:74973526:74973881:74974013:74975306:74975432,	74973882	74974013	74973899	74973899	Frame_Shift_Del	G	-	p.P1297fs
LIHC	TCGA-DD-A3A0-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74999128:74999251:75002628:75002703:75016565:75016668,	75002629	75002703	75002660	75002660	Frame_Shift_Del	C	-	p.G611fs
LIHC	TCGA-DD-A3A0-01	AREL1	ENST00000469797.1,ENST00000356357.4,ENST00000556202.1,ENST00000556327.1,ENST00000555330.1,ENST00000557401.1,ENST00000481010.2	chr14	75139886:75139921:75140736:75140814:75142401:75142411,	75140737	75140814	75140766	75140766	Frame_Shift_Del	A	-	p.Y377fs
LIHC	TCGA-DD-A3A0-01	YLPM1	ENST00000238571.3,ENST00000325680.7	chr14	75230068:75231065:75245149:75245386:75247107:75247287,	75245150	75245386	75245225	75245225	Frame_Shift_Del	A	-	p.K318fs
LIHC	TCGA-DD-A3A0-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264441	75264441	Frame_Shift_Del	G	-	p.R814fs
LIHC	TCGA-DD-A3A0-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264517	75264517	Frame_Shift_Del	C	-	p.G839fs
LIHC	TCGA-DD-A3A0-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264632	75264632	Frame_Shift_Del	A	-	p.K878fs
LIHC	TCGA-DD-A3A0-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264916	75264916	Frame_Shift_Del	A	-	p.A972fs
LIHC	TCGA-DD-A3A0-01	YLPM1	ENST00000238571.3,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7	chr14	75269258:75269379:75276082:75276500:75276612:75276705,	75276083	75276500	75276193	75276193	Frame_Shift_Del	C	-	p.V1544fs
LIHC	TCGA-DD-A3A0-01	YLPM1	ENST00000238571.3,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7	chr14	75269258:75269379:75276082:75276500:75276612:75276705,	75276083	75276500	75276295	75276295	Frame_Shift_Del	T	-	p.S1578fs
LIHC	TCGA-DD-A3A0-01	DLST	ENST00000556460.1,ENST00000334212.6,ENST00000238671.7,ENST00000554612.1	chr14	75355979:75356052:75357758:75357870:75359536:75359646,	75357759	75357870	75357819	75357819	Frame_Shift_Del	G	-	p.G132fs
LIHC	TCGA-DD-A3A0-01	DLST	ENST00000555089.1	chr14	75355979:75356052:75357770:75357870:75359536:75359646,	75357771	75357870	75357819	75357819	Frame_Shift_Del	G	-	p.G132fs
LIHC	TCGA-DD-A3A0-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515058	75515058	Frame_Shift_Del	T	-	p.N434fs
LIHC	TCGA-DD-A3A0-01	ACYP1	ENST00000555463.1	chr14	75528386:75528465:75530172:75530264:75530656:75530710,75519945:75520362:75530172:75530264:75535912:75536186,	75530173	75530264	75530189	75530189	Frame_Shift_Del	A	-	p.F53fs
LIHC	TCGA-DD-A3A0-01	TMED10	ENST00000555873.1,ENST00000555085.1	chr14	75614366:75614440:75618734:75618846:75643057:75643300,	75618735	75618846	75618811	75618811	Frame_Shift_Del	T	-	p.K87fs
LIHC	TCGA-DD-A3A0-01	FOS	ENST00000554212.1	chr14	75745530:75745826:75746608:75746831:75747262:75747310,	75746609	75746831	75746815	75746815	Frame_Shift_Del	G	-	p.R126fs
LIHC	TCGA-DD-A3A0-01	FOS	ENST00000555242.1	chr14	75745679:75745826:75746579:75746831:75747262:75747310,	75746580	75746831	75746815	75746815	Frame_Shift_Del	G	-	p.R126fs
LIHC	TCGA-DD-A3A0-01	TTLL5	ENST00000554510.1,ENST00000298832.9,ENST00000556893.1	chr14	76249489:76249873:76259258:76259443:76286349:76286504,	76259259	76259443	76259439	76259439	Frame_Shift_Del	A	-	p.Q1057fs
LIHC	TCGA-DD-A3A0-01	TTLL5	ENST00000557636.1	chr14	76249489:76249873:76259255:76259443:76286349:76286504,	76259256	76259443	76259439	76259439	Frame_Shift_Del	A	-	p.Q1057fs
LIHC	TCGA-DD-A3A0-01	GPATCH2L	ENST00000312858.5	chr14	76644330:76644385:76647106:76647192:76662220:76662315,76644234:76644274:76647106:76647192:76662220:76662315,	76647107	76647192	76647169	76647169	Frame_Shift_Del	T	-	p.C390fs
LIHC	TCGA-DD-A3A0-01	ESRRB	ENST00000505752.1,ENST00000261532.7	chr14	76964556:76964795:76965068:76965255:76966205:76966409,	76965069	76965255	76965177	76965177	Frame_Shift_Del	C	-	p.P472fs
LIHC	TCGA-DD-A3A0-01	POMT2	ENST00000452340.3,ENST00000261534.4	chr14	77765031:77765114:77765797:77765904:77771034:77771089,77765031:77765114:77765797:77765904:77767432:77767592,	77765798	77765904	77765890	77765890	Frame_Shift_Del	T	-	p.K277fs
LIHC	TCGA-DD-A3A0-01	AHSA1	ENST00000535854.2,ENST00000216479.3,ENST00000556866.1,ENST00000553374.1,ENST00000555133.1	chr14	77928502:77928585:77928984:77929102:77930940:77931029,	77928985	77929102	77929054	77929054	Frame_Shift_Del	A	-	p.K142fs
LIHC	TCGA-DD-A3A0-01	ISM2	ENST00000393684.3,ENST00000429906.1,ENST00000342219.4,ENST00000216481.6	chr14	77944917:77945058:77948664:77949010:77950665:77950908,	77948665	77949010	77948932	77948932	Frame_Shift_Del	G	-	p.Q148fs
LIHC	TCGA-DD-A3A0-01	ISM2	ENST00000342219.4,ENST00000472744.1,ENST00000493585.1	chr14	77950665:77950908:77951019:77951262:77964995:77965210,	77951020	77951262	77951036	77951036	Frame_Shift_Del	G	-	p.P35fs
LIHC	TCGA-DD-A3A0-01	SPTLC2	ENST00000216484.2,ENST00000556607.1	chr14	77978683:77978746:77984380:77984510:77987788:77987924,	77984381	77984510	77984426	77984426	Frame_Shift_Del	G	-	p.A508fs
LIHC	TCGA-DD-A3A0-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81227780:81227957:81244225:81244390:81251238:81251889,	81244226	81244390	81244294	81244294	Frame_Shift_Del	G	-	p.Q770fs
LIHC	TCGA-DD-A3A0-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251660	81251660	Frame_Shift_Del	T	-	p.K597fs
LIHC	TCGA-DD-A3A0-01	CEP128	ENST00000281129.3,ENST00000554827.1,ENST00000216517.6,ENST00000555265.1	chr14	81307025:81307112:81329100:81329217:81362061:81362134,	81329101	81329217	81329145	81329145	Frame_Shift_Del	T	-	p.R241fs
LIHC	TCGA-DD-A3A0-01	GALC	ENST00000474294.2,ENST00000554916.1,ENST00000544807.2,ENST00000261304.2,ENST00000393569.2,ENST00000556261.1,ENST00000393568.4,ENST00000554372.1,ENST00000557316.1	chr14	88448548:88448587:88450737:88450877:88452832:88452946,	88450738	88450877	88450859	88450859	Frame_Shift_Del	G	-	p.P154fs
LIHC	TCGA-DD-A3A0-01	SPATA7	ENST00000356583.5,ENST00000555401.1,ENST00000045347.7,ENST00000553626.1,ENST00000393545.4,ENST00000556553.1	chr14	88862499:88862547:88883054:88883188:88892575:88892790,	88883055	88883188	88883150	88883150	Frame_Shift_Del	A	-	p.K80fs
LIHC	TCGA-DD-A3A0-01	ZC3H14	ENST00000359301.3,ENST00000336693.4,ENST00000556945.1,ENST00000555755.1,ENST00000557693.1,ENST00000251038.5,ENST00000393514.5,ENST00000302216.8	chr14	89029994:89030037:89034382:89034497:89037427:89037468,	89034383	89034497	89034427	89034427	Frame_Shift_Del	A	-	p.K42fs
LIHC	TCGA-DD-A3A0-01	ZC3H14	ENST00000555120.1,ENST00000554602.1	chr14	89029994:89030037:89034201:89034497:89037427:89037468,	89034202	89034497	89034427	89034427	Frame_Shift_Del	A	-	p.K42fs
LIHC	TCGA-DD-A3A0-01	ZC3H14	ENST00000557607.1,ENST00000302216.8	chr14	89042183:89042284:89044328:89044484:89068267:89068353,89042183:89042284:89044328:89044484:89063077:89063152,89042183:89042284:89044328:89044484:89073586:89073707,	89044329	89044484	89044419	89044419	Frame_Shift_Del	C	-	p.T405fs
LIHC	TCGA-DD-A3A0-01	ZC3H14	ENST00000556110.1	chr14	89042183:89042284:89044336:89044484:89068267:89068353,	89044337	89044484	89044419	89044419	Frame_Shift_Del	C	-	p.T405fs
LIHC	TCGA-DD-A3A0-01	EML5	ENST00000553973.1,ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89082161:89082198:89082485:89082586:89083069:89083223,	89082486	89082586	89082533	89082533	Frame_Shift_Del	A	-	p.F1950fs
LIHC	TCGA-DD-A3A0-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087164	89087164	Frame_Shift_Del	A	-	p.L1771fs
LIHC	TCGA-DD-A3A0-01	TTC8	ENST00000554686.1,ENST00000345383.5,ENST00000338104.6,ENST00000536576.1,ENST00000556651.1,ENST00000556567.1,ENST00000346301.4,ENST00000555057.1	chr14	89291082:89291165:89305795:89305916:89307208:89307267,	89305796	89305916	89305878	89305878	Frame_Shift_Del	A	-	p.E66fs
LIHC	TCGA-DD-A3A0-01	PSMC1	ENST00000543772.2,ENST00000261303.8	chr14	90729661:90729786:90730005:90730191:90730384:90730444,	90730006	90730191	90730149	90730149	Frame_Shift_Del	G	-	p.K141fs
LIHC	TCGA-DD-A3A0-01	NRDE2	ENST00000553409.1,ENST00000357904.3,ENST00000354366.3	chr14	90767582:90767716:90769063:90769469:90770278:90770726,	90769064	90769469	90769284	90769284	Frame_Shift_Del	G	-	p.P397fs
LIHC	TCGA-DD-A3A0-01	RPS6KA5	ENST00000418736.2,ENST00000554206.1	chr14	91444738:91444868:91467431:91467503:91526675:91526929,	91467432	91467503	91467460	91467460	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-DD-A3A0-01	TC2N	ENST00000340892.5,ENST00000360594.5,ENST00000435962.2	chr14	92253856:92253971:92258710:92258902:92264128:92264240,	92258711	92258902	92258767	92258767	Frame_Shift_Del	G	-	p.L331fs
LIHC	TCGA-DD-A3A0-01	TC2N	ENST00000340892.5,ENST00000360594.5,ENST00000556018.1,ENST00000435962.2	chr14	92258710:92258902:92264642:92264743:92265332:92265342,92264128:92264245:92264642:92264743:92265332:92265342,	92264643	92264743	92264684	92264684	Frame_Shift_Del	A	-	p.Y233fs
LIHC	TCGA-DD-A3A0-01	TC2N	ENST00000360594.5,ENST00000556018.1	chr14	92278655:92278889:92280046:92280169:92302714:92302791,	92280047	92280169	92280054	92280054	Frame_Shift_Del	T	-	p.K20fs
LIHC	TCGA-DD-A3A0-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92439060:92439205:92440970:92441087:92441515:92441630,	92440971	92441087	92441021	92441021	Frame_Shift_Del	T	-	p.S1842fs
LIHC	TCGA-DD-A3A0-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92469852	92469852	Frame_Shift_Del	A	-	p.S1490fs
LIHC	TCGA-DD-A3A0-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92469918	92469918	Frame_Shift_Del	T	-	p.I1468fs
LIHC	TCGA-DD-A3A0-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92470432	92470432	Frame_Shift_Del	C	-	p.G1296fs
LIHC	TCGA-DD-A3A0-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472752	92472752	Frame_Shift_Del	T	-	p.N523fs
LIHC	TCGA-DD-A3A0-01	ATXN3	ENST00000553570.1,ENST00000555958.1,ENST00000340660.6	chr14	92559595:92559662:92562436:92562481:92572872:92572906,92555111:92555161:92562436:92562481:92572872:92572906,92555111:92555161:92562436:92562481:92563017:92563182,92560089:92560175:92562436:92562481:92563017:92563182,92560089:92560175:92562436:92562481:92572872:92572906,	92562437	92562481	92562477	92562477	Frame_Shift_Del	G	-	p.P65fs
LIHC	TCGA-DD-A3A0-01	ATXN3	ENST00000554592.1	chr14	92560089:92560175:92562436:92562478:92563017:92563182,	92562437	92562478	92562477	92562477	Frame_Shift_Del	G	-	p.P65fs
LIHC	TCGA-DD-A3A0-01	RIN3	ENST00000418924.2,ENST00000216487.7	chr14	93043704:93043822:93081751:93081824:93107582:93107674,	93081752	93081824	93081754	93081754	Frame_Shift_Del	T	-	p.L124fs
LIHC	TCGA-DD-A3A0-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000216487.7	chr14	93107582:93107674:93117926:93119420:93125505:93125814,	93117927	93119420	93118728	93118728	Frame_Shift_Del	G	-	p.S445fs
LIHC	TCGA-DD-A3A0-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93275728:93275864:93276598:93276722:93277895:93278099,	93276599	93276722	93276653	93276653	Frame_Shift_Del	T	-	p.T349fs
LIHC	TCGA-DD-A3A0-01	CHGA	ENST00000553866.1	chr14	93390543:93390590:93392949:93393043:93393894:93393934,93389738:93389750:93392949:93393043:93393894:93393934,	93392950	93393043	93393000	93393000	Frame_Shift_Del	C	-	p.S48fs
LIHC	TCGA-DD-A3A0-01	BTBD7	ENST00000554565.1	chr14	93727947:93728023:93730130:93730339:93760203:93760274,93727947:93728023:93730130:93730339:93799165:93799367,	93730131	93730339	93730184	93730184	Frame_Shift_Del	A	-	p.Y440fs
LIHC	TCGA-DD-A3A0-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761193	93761193	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-DD-A3A0-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761210	93761210	Frame_Shift_Del	T	-	p.K52fs
LIHC	TCGA-DD-A3A0-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1,ENST00000555664.1	chr14	93995631:93995672:93998895:93998924:94004334:94004564,	93998896	93998924	93998919	93998919	Frame_Shift_Del	A	-	p.K374fs
LIHC	TCGA-DD-A3A0-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1,ENST00000555664.1	chr14	94063704:94063886:94066914:94067116:94069584:94069764,	94066915	94067116	94067106	94067106	Frame_Shift_Del	T	-	p.P1188fs
LIHC	TCGA-DD-A3A0-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1	chr14	94097146:94097254:94100866:94100983:94103561:94103645,	94100867	94100983	94100954	94100954	Frame_Shift_Del	C	-	p.A1957fs
LIHC	TCGA-DD-A3A0-01	DDX24	ENST00000330836.5	chr14	94528820:94528967:94545370:94546093:94547464:94547492,	94545371	94546093	94545867	94545867	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A3A0-01	DDX24	ENST00000555054.1	chr14	94528820:94528967:94545370:94545967:94547464:94547492,	94545371	94545967	94545867	94545867	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A3A0-01	PPP4R4	ENST00000304338.3	chr14	94703901:94704023:94707009:94707132:94708124:94708294,	94707010	94707132	94707055	94707055	Frame_Shift_Del	A	-	p.E300fs
LIHC	TCGA-DD-A3A0-01	SERPINA10	ENST00000261994.4	chr14	94754622:94754896:94756212:94756980:94759525:94759608,	94756213	94756980	94756436	94756436	Frame_Shift_Del	A	-	p.F205fs
LIHC	TCGA-DD-A3A0-01	SERPINA11	ENST00000334708.3	chr14	94909414:94909562:94912667:94912941:94914468:94914597,	94912668	94912941	94912769	94912769	Frame_Shift_Del	G	-	p.A272fs
LIHC	TCGA-DD-A3A0-01	DICER1	ENST00000393063.1,ENST00000529720.1,ENST00000526495.1	chr14	95598947:95599014:95599651:95599840:95606995:95607096,	95599652	95599840	95599740	95599740	Frame_Shift_Del	G	-	p.P19fs
LIHC	TCGA-DD-A3A0-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
LIHC	TCGA-DD-A3A0-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669231	95669231	Frame_Shift_Del	G	-	p.H819fs
LIHC	TCGA-DD-A3A0-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669839	95669839	Frame_Shift_Del	T	-	p.K617fs
LIHC	TCGA-DD-A3A0-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669874	95669874	Frame_Shift_Del	T	-	p.K604fs
LIHC	TCGA-DD-A3A0-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670714	95670714	Frame_Shift_Del	T	-	p.K324fs
LIHC	TCGA-DD-A3A0-01	SYNE3	ENST00000555759.1,ENST00000554873.1,ENST00000557275.1,ENST00000334258.5	chr14	95906250:95906412:95909491:95909626:95910821:95910965,	95909492	95909626	95909555	95909555	Frame_Shift_Del	G	-	p.P616fs
LIHC	TCGA-DD-A3A0-01	AK7	ENST00000267584.4	chr14	96887158:96887269:96904171:96904252:96909066:96909155,	96904172	96904252	96904229	96904229	Frame_Shift_Del	G	-	p.G223fs
LIHC	TCGA-DD-A3A0-01	AK7	ENST00000267584.4	chr14	96912853:96912944:96916138:96916216:96917757:96917907,	96916139	96916216	96916175	96916175	Frame_Shift_Del	A	-	p.K303fs
LIHC	TCGA-DD-A3A0-01	AK7	ENST00000267584.4	chr14	96912853:96912944:96916138:96916216:96917757:96917907,	96916139	96916216	96916181	96916181	Frame_Shift_Del	C	-	p.P305fs
LIHC	TCGA-DD-A3A0-01	AK7	ENST00000267584.4	chr14	96924419:96924549:96937814:96937943:96939023:96939092,	96937815	96937943	96937933	96937933	Frame_Shift_Del	C	-	p.D492fs
LIHC	TCGA-DD-A3A0-01	AK7	ENST00000267584.4	chr14	96937814:96937943:96939023:96939092:96944801:96944999,	96939024	96939092	96939071	96939071	Frame_Shift_Del	T	-	p.F512fs
LIHC	TCGA-DD-A3A0-01	PAPOLA	ENST00000554887.1,ENST00000392990.2,ENST00000557471.1,ENST00000555626.1,ENST00000216277.8,ENST00000557320.1,ENST00000553689.1	chr14	96986391:96986565:96987342:96987409:96991646:96991728,	96987343	96987409	96987358	96987358	Frame_Shift_Del	A	-	p.G66fs
LIHC	TCGA-DD-A3A0-01	PAPOLA	ENST00000556619.1	chr14	96986391:96986565:96987300:96987409:96991646:96991728,	96987301	96987409	96987358	96987358	Frame_Shift_Del	A	-	p.G66fs
LIHC	TCGA-DD-A3A0-01	PAPOLA	ENST00000555224.1,ENST00000557406.1	chr14	96987399:96987409:96991646:96991728:96993766:96993833,96987399:96987409:96991646:96991728:96994289:96994339,	96991647	96991728	96991682	96991682	Frame_Shift_Del	A	-	p.G95fs
LIHC	TCGA-DD-A3A0-01	SETD3	ENST00000331768.5,ENST00000446066.1	chr14	99865068:99865462:99866435:99866596:99870561:99870647,	99866436	99866596	99866538	99866538	Frame_Shift_Del	C	-	p.G412fs
LIHC	TCGA-DD-A3A0-01	SETD3	ENST00000357563.4,ENST00000453764.1,ENST00000453938.1,ENST00000446066.1	chr14	99924635:99924872:99925449:99925522:99929822:99929915,	99925450	99925522	99925461	99925461	Frame_Shift_Del	T	-	p.N136fs
LIHC	TCGA-DD-A3A0-01	CYP46A1	ENST00000380228.2,ENST00000261835.3,ENST00000554176.1,ENST00000423126.2	chr14	100172983:100173122:100173904:100174015:100182146:100182297,	100173905	100174015	100173910	100173910	Frame_Shift_Del	T	-	p.A43fs
LIHC	TCGA-DD-A3A0-01	EML1	ENST00000327921.9,ENST00000262233.6,ENST00000554479.1,ENST00000334192.4,ENST00000554553.1	chr14	100364569:100364639:100367265:100367376:100373974:100374070,	100367266	100367376	100367334	100367334	Frame_Shift_Del	T	-	p.G322fs
LIHC	TCGA-DD-A3A0-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728778	100728778	Frame_Shift_Del	C	-	p.P273fs
LIHC	TCGA-DD-A3A0-01	WDR25	ENST00000335290.6	chr14	100842775:100842832:100847246:100848083:100934357:100934505,100842769:100842841:100847246:100848083:100934357:100934505,100842877:100843041:100847246:100848083:100934357:100934505,	100847247	100848083	100847348	100847348	Frame_Shift_Del	T	-	p.S29fs
LIHC	TCGA-DD-A3A0-01	PPP2R5C	ENST00000555237.1,ENST00000334743.5,ENST00000557268.1,ENST00000422945.2	chr14	102375984:102376027:102378737:102378810:102391477:102391644,102375984:102376027:102378737:102378810:102384167:102384284,	102378738	102378810	102378785	102378785	Frame_Shift_Del	A	-	p.E465fs
LIHC	TCGA-DD-A3A0-01	DYNC1H1	ENST00000360184.4	chr14	102478650:102478807:102481441:102481669:102482192:102482423,	102481442	102481669	102481639	102481639	Frame_Shift_Del	G	-	p.E2404fs
LIHC	TCGA-DD-A3A0-01	DYNC1H1	ENST00000360184.4	chr14	102502856:102502979:102504796:102504943:102505034:102505185,	102504797	102504943	102504857	102504857	Frame_Shift_Del	G	-	p.G3658fs
LIHC	TCGA-DD-A3A0-01	DYNC1H1	ENST00000360184.4	chr14	102505337:102505591:102505748:102505883:102505974:102506069,	102505749	102505883	102505800	102505800	Frame_Shift_Del	A	-	p.N3838fs
LIHC	TCGA-DD-A3A0-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675942	102675942	Frame_Shift_Del	A	-	p.K479fs
LIHC	TCGA-DD-A3A0-01	MOK	ENST00000523231.1	chr14	102698082:102698158:102698871:102699008:102700024:102700126,102692621:102692745:102698871:102699008:102700024:102700126,102695914:102695994:102698871:102699008:102700024:102700126,	102698872	102699008	102698889	102698889	Frame_Shift_Del	G	-	p.P283fs
LIHC	TCGA-DD-A3A0-01	MOK	ENST00000522537.1,ENST00000524370.1,ENST00000517966.1,ENST00000522534.1,ENST00000519058.1	chr14	102690992:102691131:102698871:102699045:102700024:102700126,102692621:102692745:102698871:102699045:102700024:102700126,102698082:102698158:102698871:102699045:102700024:102700126,102695914:102695994:102698871:102699045:102700024:102700126,	102698872	102699045	102698889	102698889	Frame_Shift_Del	G	-	p.P283fs
LIHC	TCGA-DD-A3A0-01	MOK	ENST00000521766.1,ENST00000518482.1,ENST00000521493.1,ENST00000519877.1,ENST00000521388.1,ENST00000518399.1	chr14	102718297:102718332:102749814:102749929:102771298:102771471,	102749815	102749929	102749857	102749857	Frame_Shift_Del	C	-	p.G27fs
LIHC	TCGA-DD-A3A0-01	CINP	ENST00000559504.1,ENST00000559514.1	chr14	102809971:102810726:102814615:102815096:102816255:102816385,	102814616	102815096	102814942	102814942	Frame_Shift_Del	C	-	p.R197fs
LIHC	TCGA-DD-A3A0-01	TECPR2	ENST00000359520.7	chr14	102931477:102931626:102963315:102963457:102963906:102964056,	102963316	102963457	102963371	102963371	Frame_Shift_Del	G	-	p.W1282fs
LIHC	TCGA-DD-A3A0-01	RCOR1	ENST00000560472.1	chr14	103187656:103187714:103188523:103188753:103192804:103192898,103187358:103187421:103188523:103188753:103192804:103192922,	103188524	103188753	103188601	103188601	Frame_Shift_Del	T	-	p.F424fs
LIHC	TCGA-DD-A3A0-01	TRAF3	ENST00000351691.5,ENST00000560371.1,ENST00000347662.4,ENST00000559734.1,ENST00000392745.2	chr14	103342694:103342862:103363597:103363738:103369591:103369766,103357661:103357754:103363597:103363738:103369591:103369766,	103363598	103363738	103363648	103363648	Frame_Shift_Del	T	-	p.S290fs
LIHC	TCGA-DD-A3A0-01	MARK3	ENST00000303622.9,ENST00000560417.1,ENST00000440884.3,ENST00000553942.1,ENST00000216288.7,ENST00000558223.1,ENST00000561164.1,ENST00000558698.1,ENST00000429436.2	chr14	103918254:103918320:103923478:103923549:103928741:103928798,	103923479	103923549	103923521	103923521	Frame_Shift_Del	A	-	p.E152fs
LIHC	TCGA-DD-A3A0-01	ASPG	ENST00000551177.1,ENST00000455920.2,ENST00000546892.2,ENST00000548372.1	chr14	104561867:104561993:104563890:104563974:104571664:104571681,104561867:104561993:104563890:104563974:104565189:104565316,	104563891	104563974	104563935	104563935	Frame_Shift_Del	G	-	p.L158fs
LIHC	TCGA-DD-A3A0-01	ASPG	ENST00000551177.1,ENST00000455920.2,ENST00000546892.2,ENST00000548372.1	chr14	104570640:104570823:104570958:104571072:104571664:104571681,	104570959	104571072	104570967	104570967	Frame_Shift_Del	G	-	p.A315fs
LIHC	TCGA-DD-A3A0-01	ASPG	ENST00000546892.2	chr14	104575565:104575652:104578256:104578337:104578860:104578970,	104578257	104578337	104578307	104578307	Frame_Shift_Del	G	-	p.E557fs
LIHC	TCGA-DD-A3A0-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174117	105174117	Frame_Shift_Del	C	-	p.P505fs
LIHC	TCGA-DD-A3A0-01	JAG2	ENST00000546616.1,ENST00000347004.2,ENST00000331782.3	chr14	105611266:105611398:105612067:105612310:105612721:105612837,	105612068	105612310	105612146	105612146	Frame_Shift_Del	G	-	p.P958fs
LIHC	TCGA-DD-A3A0-01	JAG2	ENST00000546616.1,ENST00000347004.2,ENST00000331782.3	chr14	105611266:105611398:105612067:105612310:105612721:105612837,	105612068	105612310	105612178	105612178	Frame_Shift_Del	C	-	p.E948fs
LIHC	TCGA-DD-A3A0-01	JAG2	ENST00000546616.1,ENST00000347004.2,ENST00000331782.3	chr14	105611266:105611398:105612067:105612310:105612721:105612837,	105612068	105612310	105612216	105612216	Frame_Shift_Del	G	-	p.P935fs
LIHC	TCGA-DD-A3A0-01	JAG2	ENST00000347004.2,ENST00000331782.3	chr14	105617619:105617733:105617962:105618076:105618274:105618394,	105617963	105618076	105618037	105618037	Frame_Shift_Del	C	-	p.G360fs
LIHC	TCGA-DD-A3A0-01	CRIP2	ENST00000548309.1,ENST00000329146.4,ENST00000483017.3,ENST00000552643.1,ENST00000538259.2,ENST00000548989.1,ENST00000550577.1	chr14	105945461:105945556:105945772:105945830:105945922:105945978,	105945773	105945830	105945781	105945781	Frame_Shift_Del	C	-	p.G170fs
LIHC	TCGA-DD-A3A0-01	NIPA2	ENST00000359727.4,ENST00000539711.2	chr15	23012278:23012439:23014437:23014528:23019799:23019856,23012278:23012439:23014437:23014528:23021197:23021359,	23014438	23014528	23014488	23014488	Frame_Shift_Del	A	-	p.F79fs
LIHC	TCGA-DD-A3A0-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25615930	25615930	Frame_Shift_Del	A	-	p.F464fs
LIHC	TCGA-DD-A3A0-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616576	25616576	Frame_Shift_Del	T	-	p.I249fs
LIHC	TCGA-DD-A3A0-01	ATP10A	ENST00000356865.6,ENST00000555815.1	chr15	25924745:25925121:25925267:25925455:25925956:25926061,	25925268	25925455	25925409	25925409	Frame_Shift_Del	A	-	p.F1242fs
LIHC	TCGA-DD-A3A0-01	GABRB3	ENST00000541819.2,ENST00000311550.5,ENST00000299267.4	chr15	26828478:26828561:26866460:26866681:27017548:27017616,	26866461	26866681	26866509	26866509	Frame_Shift_Del	T	-	p.N194fs
LIHC	TCGA-DD-A3A0-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28000020:28000618:28090104:28090198:28096527:28096621,	28090105	28090198	28090152	28090152	Frame_Shift_Del	C	-	p.G795fs
LIHC	TCGA-DD-A3A0-01	OCA2	ENST00000354638.3,ENST00000353809.5	chr15	28117008:28117068:28171272:28171400:28196929:28197038,	28171273	28171400	28171297	28171297	Frame_Shift_Del	A	-	p.F685fs
LIHC	TCGA-DD-A3A0-01	OCA2	ENST00000382996.2,ENST00000354638.3,ENST00000353809.5	chr15	28202733:28202881:28211835:28211968:28228490:28228629,	28211836	28211968	28211923	28211923	Frame_Shift_Del	A	-	p.C517fs
LIHC	TCGA-DD-A3A0-01	OCA2	ENST00000382996.2,ENST00000354638.3,ENST00000353809.5	chr15	28202733:28202881:28211835:28211968:28228490:28228629,	28211836	28211968	28211927	28211927	Frame_Shift_Del	C	-	p.G515fs
LIHC	TCGA-DD-A3A0-01	OCA2	ENST00000445578.1,ENST00000382996.2,ENST00000354638.3	chr15	28277210:28277309:28326793:28327041:28344369:28344442,	28326794	28327041	28326858	28326858	Frame_Shift_Del	C	-	p.A56fs
LIHC	TCGA-DD-A3A0-01	HERC2	ENST00000261609.7	chr15	28457590:28457729:28458887:28459118:28459221:28459418,	28458888	28459118	28459069	28459069	Frame_Shift_Del	C	-	p.G2202fs
LIHC	TCGA-DD-A3A0-01	HERC2	ENST00000261609.7,ENST00000564734.1	chr15	28501234:28501463:28502206:28502407:28505922:28506116,	28502207	28502407	28502354	28502354	Frame_Shift_Del	A	-	p.F790fs
LIHC	TCGA-DD-A3A0-01	MTMR10	ENST00000435680.1,ENST00000567567.1,ENST00000425768.1,ENST00000566338.1	chr15	31233411:31234275:31235092:31235275:31239332:31239503,	31235093	31235275	31235159	31235159	Frame_Shift_Del	G	-	p.P555fs
LIHC	TCGA-DD-A3A0-01	TRPM1	ENST00000560658.1,ENST00000559177.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31360081:31360295:31362233:31362429:31369107:31369187,	31362234	31362429	31362352	31362352	Frame_Shift_Del	C	-	p.S71fs
LIHC	TCGA-DD-A3A0-01	TRPM1	ENST00000560658.1,ENST00000559179.1	chr15	31362344:31362429:31369107:31369187:31393859:31393909,	31369108	31369187	31369163	31369163	Frame_Shift_Del	T	-	p.T27fs
LIHC	TCGA-DD-A3A0-01	SCG5	ENST00000494364.1,ENST00000413748.2,ENST00000497208.1	chr15	32933902:32933979:32935786:32936019:32971966:32972116,	32935787	32936019	32935885	32935885	Frame_Shift_Del	C	-	p.T31fs
LIHC	TCGA-DD-A3A0-01	SCG5	ENST00000494364.1,ENST00000413748.2,ENST00000497208.1	chr15	32933902:32933979:32935786:32936019:32971966:32972116,	32935787	32936019	32936000	32936000	Frame_Shift_Del	G	-	p.V69fs
LIHC	TCGA-DD-A3A0-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34131043	34131043	Frame_Shift_Del	A	-	p.K4288fs
LIHC	TCGA-DD-A3A0-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34152795:34152860:34153278:34153379:34156338:34156390,	34153279	34153379	34153325	34153325	Frame_Shift_Del	C	-	p.T4804fs
LIHC	TCGA-DD-A3A0-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34445090	34445090	Frame_Shift_Del	T	-	p.K113fs
LIHC	TCGA-DD-A3A0-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34445168	34445168	Frame_Shift_Del	T	-	p.K87fs
LIHC	TCGA-DD-A3A0-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35189097:35189167:35189759:35189906:35192822:35193064,	35189760	35189906	35189824	35189824	Frame_Shift_Del	T	-	p.T776fs
LIHC	TCGA-DD-A3A0-01	MEIS2	ENST00000338564.5,ENST00000219869.9,ENST00000557796.2,ENST00000607277.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000397624.3,ENST00000340545.5,ENST00000382766.2,ENST00000559561.1,ENST00000561208.1,ENST00000424352.2	chr15	37242524:37242601:37329014:37329160:37375971:37376086,	37329015	37329160	37329049	37329049	Frame_Shift_Del	T	-	p.N289fs
LIHC	TCGA-DD-A3A0-01	RASGRP1	ENST00000558432.1,ENST00000310803.5,ENST00000450598.2,ENST00000561180.1,ENST00000539159.1,ENST00000414708.2	chr15	38782754:38782889:38786582:38786968:38790994:38791147,	38786583	38786968	38786675	38786675	Frame_Shift_Del	C	-	p.A723fs
LIHC	TCGA-DD-A3A0-01	BUB1B	ENST00000287598.6,ENST00000412359.3	chr15	40500837:40500971:40501835:40501976:40502310:40502411,	40501836	40501976	40501953	40501953	Frame_Shift_Del	A	-	p.E754fs
LIHC	TCGA-DD-A3A0-01	DISP2	ENST00000267889.3	chr15	40656621:40656745:40657038:40657154:40657347:40657475,	40657039	40657154	40657133	40657133	Frame_Shift_Del	C	-	p.S233fs
LIHC	TCGA-DD-A3A0-01	DISP2	ENST00000267889.3	chr15	40657038:40657154:40657347:40657475:40657828:40657895,	40657348	40657475	40657468	40657468	Frame_Shift_Del	C	-	p.G280fs
LIHC	TCGA-DD-A3A0-01	ZFYVE19	ENST00000355341.4,ENST00000566407.1,ENST00000299173.10,ENST00000570108.1	chr15	41099989:41100066:41101316:41101438:41101605:41101656,	41101317	41101438	41101389	41101389	Frame_Shift_Del	G	-	p.G118fs
LIHC	TCGA-DD-A3A0-01	ZFYVE19	ENST00000567756.1	chr15	41099989:41100066:41101353:41101438:41101605:41101656,	41101354	41101438	41101389	41101389	Frame_Shift_Del	G	-	p.G118fs
LIHC	TCGA-DD-A3A0-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41191899	41191899	Frame_Shift_Del	G	-	p.G295fs
LIHC	TCGA-DD-A3A0-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41192984	41192984	Frame_Shift_Del	G	-	p.L656fs
LIHC	TCGA-DD-A3A0-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41193083	41193083	Frame_Shift_Del	C	-	p.S689fs
LIHC	TCGA-DD-A3A0-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41313097:41313323:41319793:41319934:41337101:41337244,	41319794	41319934	41319813	41319813	Frame_Shift_Del	A	-	p.L1010fs
LIHC	TCGA-DD-A3A0-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41384224:41384380:41387798:41387866:41387956:41388126,	41387799	41387866	41387816	41387816	Frame_Shift_Del	T	-	p.S122fs
LIHC	TCGA-DD-A3A0-01	CHP1	ENST00000558351.1,ENST00000334660.5,ENST00000560411.1	chr15	41562754:41562816:41570964:41571087:41571533:41571600,	41570965	41571087	41571079	41571079	Frame_Shift_Del	T	-	p.F176fs
LIHC	TCGA-DD-A3A0-01	NUSAP1	ENST00000260359.6,ENST00000450318.1,ENST00000560177.1,ENST00000558123.1,ENST00000559596.1	chr15	41650346:41650456:41657599:41657787:41663724:41663882,	41657600	41657787	41657708	41657708	Frame_Shift_Del	G	-	p.G242fs
LIHC	TCGA-DD-A3A0-01	NUSAP1	ENST00000560747.1,ENST00000450592.2,ENST00000414849.2	chr15	41650346:41650456:41657602:41657787:41663724:41663882,	41657603	41657787	41657708	41657708	Frame_Shift_Del	G	-	p.G242fs
LIHC	TCGA-DD-A3A0-01	RTF1	ENST00000389629.4	chr15	41730518:41730629:41745098:41745246:41749869:41750074,	41745099	41745246	41745117	41745117	Frame_Shift_Del	A	-	p.K110fs
LIHC	TCGA-DD-A3A0-01	RPAP1	ENST00000562303.1,ENST00000304330.4	chr15	41812588:41813345:41813935:41814078:41814295:41814448,	41813936	41814078	41814009	41814009	Frame_Shift_Del	G	-	p.R989fs
LIHC	TCGA-DD-A3A0-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41822061:41822177:41823220:41823400:41825543:41825592,41822061:41822177:41823220:41823400:41826911:41827133,	41823221	41823400	41823267	41823267	Frame_Shift_Del	A	-	p.F299fs
LIHC	TCGA-DD-A3A0-01	MGA	ENST00000545763.1,ENST00000566586.1	chr15	42028378:42028896:42032250:42032401:42040834:42040910,	42032251	42032401	42032388	42032388	Frame_Shift_Del	A	-	p.A1524fs
LIHC	TCGA-DD-A3A0-01	MGA	ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42032254:42032401:42034743:42035370:42040834:42040910,	42034744	42035370	42034903	42034903	Frame_Shift_Del	T	-	p.V1582fs
LIHC	TCGA-DD-A3A0-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42049985:42050037:42052520:42052727:42053936:42054048,	42052521	42052727	42052538	42052538	Frame_Shift_Del	A	-	p.L2403fs
LIHC	TCGA-DD-A3A0-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42053936:42054048:42054326:42054560:42057083:42057260,	42054327	42054560	42054396	42054396	Frame_Shift_Del	A	-	p.Q2527fs
LIHC	TCGA-DD-A3A0-01	MAPKBP1	ENST00000456763.2,ENST00000512970.1,ENST00000502292.1,ENST00000505061.1,ENST00000457542.2,ENST00000510535.1,ENST00000507762.1,ENST00000514566.1,ENST00000221214.6	chr15	42067532:42067587:42092020:42092112:42103080:42103143,	42092021	42092112	42092080	42092080	Frame_Shift_Del	C	-	p.D58fs
LIHC	TCGA-DD-A3A0-01	MAPKBP1	ENST00000456763.2,ENST00000502292.1,ENST00000457542.2,ENST00000514566.1	chr15	42106747:42106937:42107456:42107603:42107821:42107997,	42107457	42107603	42107496	42107496	Frame_Shift_Del	C	-	p.P405fs
LIHC	TCGA-DD-A3A0-01	MAPKBP1	ENST00000456763.2,ENST00000502292.1,ENST00000457542.2,ENST00000514566.1	chr15	42106747:42106937:42107456:42107603:42107821:42107997,	42107457	42107603	42107562	42107562	Frame_Shift_Del	G	-	p.G426fs
LIHC	TCGA-DD-A3A0-01	PLA2G4D	ENST00000290472.3	chr15	42373314:42373331:42373676:42373812:42373994:42374032,	42373677	42373812	42373810	42373810	Frame_Shift_Del	G	-	p.P275fs
LIHC	TCGA-DD-A3A0-01	CAPN3	ENST00000397204.4	chr15	42695938:42695975:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42700408:42700484,42697064:42697153:42698123:42698141:42701500:42701578,	42698124	42698141	42698130	42698130	Frame_Shift_Del	A	-	p.K598fs
LIHC	TCGA-DD-A3A0-01	ZNF106	ENST00000263805.4,ENST00000567772.2,ENST00000565611.1,ENST00000565500.1,ENST00000565380.1	chr15	42734270:42734612:42736399:42736460:42737024:42737179,	42736400	42736460	42736408	42736408	Frame_Shift_Del	C	-	p.G1115fs
LIHC	TCGA-DD-A3A0-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742038	42742038	Frame_Shift_Del	T	-	p.N788fs
LIHC	TCGA-DD-A3A0-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742591	42742591	Frame_Shift_Del	T	-	p.I604fs
LIHC	TCGA-DD-A3A0-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742679	42742679	Frame_Shift_Del	T	-	p.K574fs
LIHC	TCGA-DD-A3A0-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42743102	42743102	Frame_Shift_Del	G	-	p.P433fs
LIHC	TCGA-DD-A3A0-01	CDAN1	ENST00000356231.3,ENST00000562465.1	chr15	43020401:43020465:43020849:43021008:43021220:43021324,	43020850	43021008	43020855	43020855	Frame_Shift_Del	C	-	p.G933fs
LIHC	TCGA-DD-A3A0-01	CDAN1	ENST00000356231.3	chr15	43023408:43023529:43023817:43024023:43024530:43024606,	43023818	43024023	43023871	43023871	Frame_Shift_Del	G	-	p.P562fs
LIHC	TCGA-DD-A3A0-01	CDAN1	ENST00000356231.3	chr15	43024530:43024606:43025294:43025384:43026135:43026245,	43025295	43025384	43025321	43025321	Frame_Shift_Del	A	-	p.F477fs
LIHC	TCGA-DD-A3A0-01	UBR1	ENST00000569971.1,ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43335541:43335593:43339358:43339487:43340589:43340689,	43339359	43339487	43339390	43339390	Frame_Shift_Del	A	-	p.L547fs
LIHC	TCGA-DD-A3A0-01	TMEM62	ENST00000563859.1,ENST00000260403.2,ENST00000569369.1	chr15	43470804:43470909:43473378:43473497:43476457:43476583,	43473379	43473497	43473426	43473426	Frame_Shift_Del	T	-	p.F512fs
LIHC	TCGA-DD-A3A0-01	ADAL	ENST00000428046.3	chr15	43635191:43635273:43638051:43638178:43641104:43641243,	43638052	43638178	43638145	43638145	Frame_Shift_Del	A	-	p.T173fs
LIHC	TCGA-DD-A3A0-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43672281:43672361:43675500:43675702:43677988:43678114,	43675501	43675702	43675520	43675520	Frame_Shift_Del	G	-	p.G181fs
LIHC	TCGA-DD-A3A0-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43692241:43692419:43693913:43694048:43695880:43695997,	43693914	43694048	43693966	43693966	Frame_Shift_Del	C	-	p.T550fs
LIHC	TCGA-DD-A3A0-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000565548.1,ENST00000564079.1,ENST00000399460.3	chr15	43694015:43694048:43695880:43695997:43696610:43696750,	43695881	43695997	43695922	43695922	Frame_Shift_Del	T	-	p.S591fs
LIHC	TCGA-DD-A3A0-01	TUBGCP4	ENST00000566251.1	chr15	43694015:43694048:43695880:43696040:43696610:43696750,	43695881	43696040	43695922	43695922	Frame_Shift_Del	T	-	p.S591fs
LIHC	TCGA-DD-A3A0-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000411772.1	chr15	43712815:43712933:43713222:43713372:43714052:43714324,	43713223	43713372	43713345	43713345	Frame_Shift_Del	C	-	p.G1371fs
LIHC	TCGA-DD-A3A0-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000411772.1	chr15	43712815:43712933:43713222:43713372:43714052:43714324,	43713223	43713372	43713363	43713363	Frame_Shift_Del	T	-	p.K1365fs
LIHC	TCGA-DD-A3A0-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748608	43748608	Frame_Shift_Del	G	-	p.P728fs
LIHC	TCGA-DD-A3A0-01	STRC	ENST00000440125.1,ENST00000450892.2,ENST00000541030.1,ENST00000455136.1	chr15	43896901:43897044:43897461:43897597:43900060:43900173,	43897462	43897597	43897503	43897503	Frame_Shift_Del	G	-	p.L1297fs
LIHC	TCGA-DD-A3A0-01	CATSPER2	ENST00000354127.4,ENST00000396879.1,ENST00000381761.1	chr15	43924396:43924561:43924914:43925126:43927557:43927614,	43924915	43925126	43925001	43925001	Frame_Shift_Del	T	-	p.K435fs
LIHC	TCGA-DD-A3A0-01	CATSPER2	ENST00000321596.5	chr15	43924396:43924561:43924914:43925132:43927557:43927614,	43924915	43925132	43925001	43925001	Frame_Shift_Del	T	-	p.K435fs
LIHC	TCGA-DD-A3A0-01	SERF2	ENST00000445816.1	chr15	44085172:44085281:44085907:44086134:44086571:44088287,	44085908	44086134	44085936	44085936	Frame_Shift_Del	A	-	p.K50fs
LIHC	TCGA-DD-A3A0-01	FRMD5	ENST00000417257.1,ENST00000421674.1,ENST00000484674.1,ENST00000402883.1,ENST00000449926.1,ENST00000558108.2	chr15	44184178:44184267:44194372:44194460:44198025:44198144,	44194373	44194460	44194418	44194418	Frame_Shift_Del	T	-	p.K198fs
LIHC	TCGA-DD-A3A0-01	CASC4	ENST00000360824.3,ENST00000345795.2,ENST00000558847.1	chr15	44671887:44671986:44673003:44673174:44705533:44705634,	44673004	44673174	44673029	44673029	Frame_Shift_Del	C	-	p.N309fs
LIHC	TCGA-DD-A3A0-01	CASC4	ENST00000299957.6	chr15	44673061:44673174:44695084:44695252:44705533:44705634,	44695085	44695252	44695135	44695135	Frame_Shift_Del	A	-	p.K375fs
LIHC	TCGA-DD-A3A0-01	CASC4	ENST00000299957.6	chr15	44673061:44673174:44695084:44695252:44705533:44705634,	44695085	44695252	44695225	44695225	Frame_Shift_Del	G	-	p.G405fs
LIHC	TCGA-DD-A3A0-01	SPG11	ENST00000558138.1	chr15	44858414:44858503:44859621:44859790:44861595:44861703,44858414:44858503:44859621:44859790:44862722:44862856,	44859622	44859790	44859626	44859626	Frame_Shift_Del	G	-	p.P2250fs
LIHC	TCGA-DD-A3A0-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000557866.1,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44925702:44925835:44941063:44941209:44943688:44943842,	44941064	44941209	44941095	44941095	Frame_Shift_Del	C	-	p.G524fs
LIHC	TCGA-DD-A3A0-01	TRIM69	ENST00000329464.4,ENST00000559390.1	chr15	45028763:45028908:45047097:45047574:45048565:45048661,	45047098	45047574	45047293	45047293	Frame_Shift_Del	T	-	p.F68fs
LIHC	TCGA-DD-A3A0-01	SORD	ENST00000558789.1,ENST00000559230.1	chr15	45315392:45315547:45332605:45332639:45335454:45335619,	45332606	45332639	45332620	45332620	Frame_Shift_Del	C	-	p.I27fs
LIHC	TCGA-DD-A3A0-01	SORD	ENST00000558789.1	chr15	45335454:45335619:45357468:45357587:45360378:45360444,	45357469	45357587	45357559	45357559	Frame_Shift_Del	G	-	p.L172fs
LIHC	TCGA-DD-A3A0-01	DUOXA1	ENST00000560572.1,ENST00000430224.2,ENST00000267803.4,ENST00000558996.1,ENST00000558422.1,ENST00000559014.1	chr15	45411344:45411563:45412300:45412518:45412789:45413003,	45412301	45412518	45412415	45412415	Frame_Shift_Del	C	-	p.A175fs
LIHC	TCGA-DD-A3A0-01	DUOXA1	ENST00000559013.1	chr15	45411344:45411563:45412300:45412565:45412789:45413003,	45412301	45412565	45412415	45412415	Frame_Shift_Del	C	-	p.A175fs
LIHC	TCGA-DD-A3A0-01	DUOX1	ENST00000389037.3,ENST00000561220.2	chr15	45422235:45422296:45424115:45424222:45426061:45426132,	45424116	45424222	45424204	45424204	Frame_Shift_Del	G	-	p.G14fs
LIHC	TCGA-DD-A3A0-01	SHF	ENST00000560471.1	chr15	45464127:45464200:45464346:45464516:45467416:45467467,45464127:45464200:45464346:45464516:45465773:45465856,	45464347	45464516	45464351	45464351	Frame_Shift_Del	T	-	p.N320fs
LIHC	TCGA-DD-A3A0-01	SHF	ENST00000561239.2,ENST00000290894.8	chr15	45464127:45464200:45464344:45464516:45467416:45467467,45464127:45464200:45464344:45464516:45465773:45465856,	45464345	45464516	45464351	45464351	Frame_Shift_Del	T	-	p.N320fs
LIHC	TCGA-DD-A3A0-01	SLC30A4	ENST00000261867.4	chr15	45779724:45779830:45781038:45781240:45782925:45783079,	45781039	45781240	45781188	45781188	Frame_Shift_Del	G	-	p.L249fs
LIHC	TCGA-DD-A3A0-01	SLC30A4	ENST00000261867.4	chr15	45781038:45781240:45782925:45783079:45803335:45803482,	45782926	45783079	45783031	45783031	Frame_Shift_Del	C	-	p.G196fs
LIHC	TCGA-DD-A3A0-01	SEMA6D	ENST00000354744.4,ENST00000389432.2	chr15	48058812:48058874:48059233:48059290:48060777:48060812,48058812:48058874:48059233:48059290:48062693:48062962,	48059234	48059290	48059237	48059237	Frame_Shift_Del	T	-	p.I571fs
LIHC	TCGA-DD-A3A0-01	MYEF2	ENST00000324324.7	chr15	48441228:48441280:48441359:48441568:48443669:48443768,48441228:48441280:48441359:48441568:48443296:48443368,	48441360	48441568	48441520	48441520	Frame_Shift_Del	C	-	p.G476fs
LIHC	TCGA-DD-A3A0-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577398	48577398	Frame_Shift_Del	T	-	p.F861fs
LIHC	TCGA-DD-A3A0-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48583974:48584061:48591336:48591472:48593511:48593579,	48591337	48591472	48591434	48591434	Frame_Shift_Del	A	-	p.K1020fs
LIHC	TCGA-DD-A3A0-01	FBN1	ENST00000561429.1,ENST00000316623.5,ENST00000559133.1	chr15	48703397:48703576:48704765:48704940:48707732:48707964,	48704766	48704940	48704905	48704905	Frame_Shift_Del	T	-	p.N2696fs
LIHC	TCGA-DD-A3A0-01	FBN1	ENST00000537463.2	chr15	48905206:48905289:48936802:48937147:48937771:48937906,	48936803	48937147	48936894	48936894	Frame_Shift_Del	C	-	p.A25fs
LIHC	TCGA-DD-A3A0-01	CEP152	ENST00000380950.2,ENST00000399334.3	chr15	49030347:49031485:49033797:49033901:49034143:49034211,	49033798	49033901	49033816	49033816	Frame_Shift_Del	T	-	p.S1359fs
LIHC	TCGA-DD-A3A0-01	CEP152	ENST00000380950.2,ENST00000399334.3	chr15	49030347:49031485:49033797:49033901:49034143:49034211,	49033798	49033901	49033819	49033819	Frame_Shift_Del	G	-	p.Q1358fs
LIHC	TCGA-DD-A3A0-01	SHC4	ENST00000332408.4	chr15	49176444:49176564:49182944:49183008:49217075:49217146,	49182945	49183008	49182952	49182952	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-DD-A3A0-01	GALK2	ENST00000559454.1,ENST00000544523.1,ENST00000560031.1,ENST00000560119.1,ENST00000327171.3,ENST00000543495.1,ENST00000396509.2,ENST00000561014.1	chr15	49574183:49574282:49575762:49575915:49584523:49584734,	49575763	49575915	49575791	49575791	Frame_Shift_Del	G	-	p.R200fs
LIHC	TCGA-DD-A3A0-01	FAM227B	ENST00000561116.1	chr15	49869825:49869861:49880212:49880280:49903411:49903465,	49880213	49880280	49880220	49880220	Frame_Shift_Del	T	-	p.K133fs
LIHC	TCGA-DD-A3A0-01	DTWD1	ENST00000559164.1	chr15	49917332:49917628:49924355:49924499:49926732:49926792,49917309:49917628:49924355:49924499:49925716:49925809,	49924356	49924499	49924380	49924380	Frame_Shift_Del	A	-	p.K97fs
LIHC	TCGA-DD-A3A0-01	DTWD1	ENST00000560632.1	chr15	49917332:49917628:49924367:49924499:49926732:49926792,	49924368	49924499	49924380	49924380	Frame_Shift_Del	A	-	p.K97fs
LIHC	TCGA-DD-A3A0-01	SLC27A2	ENST00000380902.4,ENST00000544960.1,ENST00000267842.5,ENST00000559938.1	chr15	50497549:50497560:50515161:50515356:50518184:50518275,	50515162	50515356	50515165	50515165	Frame_Shift_Del	C	-	p.P326fs
LIHC	TCGA-DD-A3A0-01	USP8	ENST00000561211.1,ENST00000559242.1	chr15	50733545:50733690:50741596:50741682:50751196:50751267,50731239:50731374:50741596:50741682:50751196:50751267,	50741597	50741682	50741599	50741599	Frame_Shift_Del	T	-	p.D84fs
LIHC	TCGA-DD-A3A0-01	USP8	ENST00000561211.1,ENST00000559242.1	chr15	50733545:50733690:50741596:50741682:50751196:50751267,50731239:50731374:50741596:50741682:50751196:50751267,	50741597	50741682	50741633	50741633	Frame_Shift_Del	A	-	p.K97fs
LIHC	TCGA-DD-A3A0-01	USP8	ENST00000433963.1,ENST00000425032.3,ENST00000559329.1,ENST00000560527.1,ENST00000560730.1,ENST00000396444.3,ENST00000307179.4	chr15	50754476:50754519:50757243:50757388:50763829:50763932,	50757244	50757388	50757285	50757285	Frame_Shift_Del	A	-	p.K195fs
LIHC	TCGA-DD-A3A0-01	USP50	ENST00000532404.1	chr15	50830905:50831048:50833245:50833461:50835794:50835990,	50833246	50833461	50833371	50833371	Frame_Shift_Del	G	-	p.Q179fs
LIHC	TCGA-DD-A3A0-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50878588:50878685:50881788:50881853:50884107:50884823,	50881789	50881853	50881832	50881832	Frame_Shift_Del	A	-	p.L1449fs
LIHC	TCGA-DD-A3A0-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50881788:50881853:50884107:50884823:50885813:50885946,	50884108	50884823	50884195	50884195	Frame_Shift_Del	T	-	p.S1413fs
LIHC	TCGA-DD-A3A0-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50881788:50881853:50884107:50884823:50885813:50885946,	50884108	50884823	50884226	50884226	Frame_Shift_Del	A	-	p.F1402fs
LIHC	TCGA-DD-A3A0-01	TRPM7	ENST00000313478.7,ENST00000560955.1,ENST00000560638.1	chr15	50905903:50906038:50906319:50906460:50911941:50911995,	50906320	50906460	50906356	50906356	Frame_Shift_Del	A	-	p.F533fs
LIHC	TCGA-DD-A3A0-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50916362:50916497:50920345:50920446:50923613:50923686,	50920346	50920446	50920377	50920377	Frame_Shift_Del	T	-	p.N425fs
LIHC	TCGA-DD-A3A0-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50931620:50931745:50935536:50935750:50940883:50941082,	50935537	50935750	50935608	50935608	Frame_Shift_Del	A	-	p.L156fs
LIHC	TCGA-DD-A3A0-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50931620:50931745:50935536:50935750:50940883:50941082,	50935537	50935750	50935647	50935647	Frame_Shift_Del	C	-	p.G142fs
LIHC	TCGA-DD-A3A0-01	SPPL2A	ENST00000558934.1,ENST00000261854.5	chr15	50999644:51000071:51012136:51012297:51014320:51014398,	51012137	51012297	51012246	51012246	Frame_Shift_Del	T	-	p.K460fs
LIHC	TCGA-DD-A3A0-01	SPPL2A	ENST00000261854.5	chr15	51017417:51017520:51018517:51018574:51023161:51023236,	51018518	51018574	51018533	51018533	Frame_Shift_Del	A	-	p.F377fs
LIHC	TCGA-DD-A3A0-01	DMXL2	ENST00000543779.2,ENST00000561079.1,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51755575:51755693:51756871:51757073:51757762:51757848,	51756872	51757073	51756932	51756932	Frame_Shift_Del	C	-	p.G2582fs
LIHC	TCGA-DD-A3A0-01	DMXL2	ENST00000543779.2,ENST00000251076.5	chr15	51790748:51792428:51795002:51795230:51799330:51799450,	51795003	51795230	51795133	51795133	Frame_Shift_Del	G	-	p.P954fs
LIHC	TCGA-DD-A3A0-01	SCG3	ENST00000542355.2,ENST00000220478.3	chr15	51988071:51988188:51991515:51991599:51993303:51993441,	51991516	51991599	51991548	51991548	Frame_Shift_Del	A	-	p.K340fs
LIHC	TCGA-DD-A3A0-01	MAPK6	ENST00000261845.5	chr15	52338026:52339212:52342189:52342334:52350829:52350994,	52342190	52342334	52342203	52342203	Frame_Shift_Del	A	-	p.E190fs
LIHC	TCGA-DD-A3A0-01	GNB5	ENST00000396335.4,ENST00000559348.1,ENST00000558519.1,ENST00000557936.1,ENST00000358784.7,ENST00000261837.7	chr15	52416669:52416836:52418144:52418241:52420392:52420441,	52418145	52418241	52418187	52418187	Frame_Shift_Del	T	-	p.S323fs
LIHC	TCGA-DD-A3A0-01	GNB5	ENST00000358784.7,ENST00000261837.7	chr15	52433402:52433469:52439655:52439732:52442080:52442122,	52439656	52439732	52439674	52439674	Frame_Shift_Del	C	-	p.G159fs
LIHC	TCGA-DD-A3A0-01	MYO5C	ENST00000261839.7	chr15	52548835:52548917:52553058:52553324:52556386:52556493,	52553059	52553324	52553071	52553071	Frame_Shift_Del	A	-	p.L434fs
LIHC	TCGA-DD-A3A0-01	UNC13C	ENST00000545554.1,ENST00000260323.11,ENST00000561210.1,ENST00000537900.1	chr15	54624240:54624309:54625964:54626054:54630558:54630687,	54625965	54626054	54626040	54626040	Frame_Shift_Del	T	-	p.F1525fs
LIHC	TCGA-DD-A3A0-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652331	55652331	Frame_Shift_Del	T	-	p.K547fs
LIHC	TCGA-DD-A3A0-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652823	55652823	Frame_Shift_Del	T	-	p.K383fs
LIHC	TCGA-DD-A3A0-01	TEX9	ENST00000352903.2,ENST00000537232.1,ENST00000558083.2,ENST00000561221.2	chr15	56681515:56681598:56683440:56683616:56686362:56686445,	56683441	56683616	56683584	56683584	Frame_Shift_Del	T	-	p.I105fs
LIHC	TCGA-DD-A3A0-01	TEX9	ENST00000352903.2,ENST00000537232.1	chr15	56704499:56704634:56719802:56719937:56720564:56720671,	56719803	56719937	56719811	56719811	Frame_Shift_Del	A	-	p.A249fs
LIHC	TCGA-DD-A3A0-01	ZNF280D	ENST00000267807.7,ENST00000558067.1,ENST00000396245.1,ENST00000559237.1,ENST00000559000.1	chr15	56950621:56950684:56958592:56958733:56958997:56959184,56950621:56950684:56958592:56958733:56958876:56959184,	56958593	56958733	56958685	56958685	Frame_Shift_Del	T	-	p.K621fs
LIHC	TCGA-DD-A3A0-01	ZNF280D	ENST00000267807.7,ENST00000560002.1,ENST00000396245.1,ENST00000559237.1,ENST00000558002.1,ENST00000559000.1	chr15	56985295:56985413:56993130:56993270:56993370:56993436,	56993131	56993270	56993139	56993139	Frame_Shift_Del	A	-	p.S112fs
LIHC	TCGA-DD-A3A0-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58467116:58467235:58471326:58471544:58476159:58476639,	58471327	58471544	58471368	58471368	Frame_Shift_Del	C	-	p.I179fs
LIHC	TCGA-DD-A3A0-01	SLTM	ENST00000249736.7,ENST00000558486.1,ENST00000484498.1,ENST00000492526.1,ENST00000560682.1,ENST00000559880.1,ENST00000557950.1,ENST00000560012.1,ENST00000558756.1,ENST00000480144.1	chr15	59209133:59209198:59224554:59224642:59225602:59225648,	59224555	59224642	59224594	59224594	Frame_Shift_Del	A	-	p.S71fs
LIHC	TCGA-DD-A3A0-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000557998.1,ENST00000348370.4,ENST00000561186.1	chr15	59350554:59350749:59358962:59359282:59368152:59368414,	59358963	59359282	59359190	59359190	Frame_Shift_Del	T	-	p.F532fs
LIHC	TCGA-DD-A3A0-01	MYO1E	ENST00000559489.1,ENST00000288235.4	chr15	59506426:59506513:59506838:59506919:59510089:59510286,	59506839	59506919	59506905	59506905	Frame_Shift_Del	G	-	p.A374fs
LIHC	TCGA-DD-A3A0-01	ANXA2	ENST00000504475.2	chr15	60641273:60641396:60643391:60643450:60643922:60644018,60639540:60639888:60643391:60643450:60643922:60644018,	60643392	60643450	60643419	60643419	Frame_Shift_Del	A	-	p.F270fs
LIHC	TCGA-DD-A3A0-01	ANXA2	ENST00000559956.1,ENST00000558558.1,ENST00000421017.2,ENST00000396024.3,ENST00000559350.1,ENST00000558986.1,ENST00000559559.1,ENST00000559370.1,ENST00000557937.1,ENST00000451270.2,ENST00000560367.2,ENST00000557904.1,ENST00000559467.1,ENST00000560014.1,ENST00000560389.1,ENST00000557906.1,ENST00000558503.1,ENST00000560165.1,ENST00000560468.1,ENST00000332680.4,ENST00000559780.1,ENST00000559818.1	chr15	60666817:60666881:60674540:60674640:60678226:60678285,60656674:60656722:60674540:60674640:60678226:60678285,	60674541	60674640	60674554	60674554	Frame_Shift_Del	G	-	p.A45fs
LIHC	TCGA-DD-A3A0-01	VPS13C	ENST00000261517.5,ENST00000560637.1,ENST00000249837.3	chr15	62147069:62147153:62148484:62148608:62155638:62155727,	62148485	62148608	62148533	62148533	Frame_Shift_Del	A	-	p.F3676fs
LIHC	TCGA-DD-A3A0-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62174794:62174935:62176326:62176468:62182363:62182599,	62176327	62176468	62176412	62176412	Frame_Shift_Del	T	-	p.K3133fs
LIHC	TCGA-DD-A3A0-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62212265:62212530:62212696:62212846:62214145:62214232,	62212697	62212846	62212793	62212793	Frame_Shift_Del	A	-	p.I2372fs
LIHC	TCGA-DD-A3A0-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62219289:62219519:62221699:62221947:62223288:62223458,	62221700	62221947	62221755	62221755	Frame_Shift_Del	T	-	p.K2077fs
LIHC	TCGA-DD-A3A0-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62244058:62244179:62246619:62246753:62250806:62250915,	62246620	62246753	62246696	62246696	Frame_Shift_Del	T	-	p.N1408fs
LIHC	TCGA-DD-A3A0-01	VPS13C	ENST00000558088.1	chr15	62244058:62244179:62246665:62246753:62250806:62250915,	62246666	62246753	62246696	62246696	Frame_Shift_Del	T	-	p.N1408fs
LIHC	TCGA-DD-A3A0-01	TPM1	ENST00000559556.1,ENST00000403994.3,ENST00000560970.1,ENST00000558347.1,ENST00000358278.3	chr15	63335974:63336030:63336225:63336351:63349183:63349209,63335086:63335142:63336225:63336351:63349183:63349209,	63336226	63336351	63336264	63336264	Frame_Shift_Del	G	-	p.K93fs
LIHC	TCGA-DD-A3A0-01	TPM1	ENST00000558314.1	chr15	63335086:63335142:63335904:63336351:63349183:63349209,	63335905	63336351	63336264	63336264	Frame_Shift_Del	G	-	p.K93fs
LIHC	TCGA-DD-A3A0-01	APH1B	ENST00000261879.5,ENST00000380340.4,ENST00000559971.1,ENST00000560890.1	chr15	63578756:63578827:63594543:63594671:63597812:63597934,63579622:63579745:63594543:63594671:63597812:63597934,	63594544	63594671	63594594	63594594	Frame_Shift_Del	T	-	p.F178fs
LIHC	TCGA-DD-A3A0-01	HERC1	ENST00000443617.2	chr15	63950742:63950917:63951934:63952135:63953171:63953224,	63951935	63952135	63952080	63952080	Frame_Shift_Del	T	-	p.E3093fs
LIHC	TCGA-DD-A3A0-01	SNX1	ENST00000559844.1,ENST00000261889.5,ENST00000561026.1,ENST00000380285.3,ENST00000560829.1	chr15	64426862:64427006:64428528:64428609:64429059:64429131,	64428529	64428609	64428604	64428604	Frame_Shift_Del	T	-	p.F433fs
LIHC	TCGA-DD-A3A0-01	TRIP4	ENST00000261884.3	chr15	64717738:64717830:64737204:64737307:64747195:64747435,	64737205	64737307	64737253	64737253	Frame_Shift_Del	A	-	p.K542fs
LIHC	TCGA-DD-A3A0-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967994	64967994	Frame_Shift_Del	C	-	p.P982fs
LIHC	TCGA-DD-A3A0-01	RBPMS2	ENST00000560606.1,ENST00000300069.4	chr15	65033371:65033441:65040617:65040766:65041198:65041349,	65040618	65040766	65040714	65040714	Frame_Shift_Del	G	-	p.P157fs
LIHC	TCGA-DD-A3A0-01	MTFMT	ENST00000558460.1,ENST00000558614.1	chr15	65316009:65316132:65319168:65319378:65321742:65321870,	65319169	65319378	65319270	65319270	Frame_Shift_Del	G	-	p.P106fs
LIHC	TCGA-DD-A3A0-01	PDCD7	ENST00000204549.4	chr15	65411713:65411801:65412055:65412292:65421369:65421502,	65412056	65412292	65412143	65412143	Frame_Shift_Del	T	-	p.R387fs
LIHC	TCGA-DD-A3A0-01	IGDCC3	ENST00000558354.1,ENST00000327987.4	chr15	65625594:65625753:65627065:65627203:65627628:65627759,	65627066	65627203	65627176	65627176	Frame_Shift_Del	G	-	p.P238fs
LIHC	TCGA-DD-A3A0-01	DPP8	ENST00000300141.6,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6	chr15	65772559:65772737:65773852:65773953:65777436:65777498,	65773853	65773953	65773903	65773903	Frame_Shift_Del	A	-	p.F372fs
LIHC	TCGA-DD-A3A0-01	DPP8	ENST00000300141.6,ENST00000341861.5,ENST00000358939.4,ENST00000559233.1,ENST00000395652.3,ENST00000321118.7,ENST00000321147.6	chr15	65772559:65772737:65773852:65773953:65777436:65777498,	65773853	65773953	65773915	65773915	Frame_Shift_Del	A	-	p.F368fs
LIHC	TCGA-DD-A3A0-01	SLC24A1	ENST00000546330.1,ENST00000261892.6,ENST00000339868.6,ENST00000537259.1,ENST00000449142.2,ENST00000544319.2	chr15	65943260:65943280:65944007:65944097:65944979:65945146,	65944008	65944097	65944020	65944020	Frame_Shift_Del	T	-	p.F937fs
LIHC	TCGA-DD-A3A0-01	SLC24A1	ENST00000546330.1,ENST00000261892.6,ENST00000339868.6,ENST00000537259.1,ENST00000449142.2,ENST00000544319.2	chr15	65943260:65943280:65944007:65944097:65944979:65945146,	65944008	65944097	65944027	65944027	Frame_Shift_Del	T	-	p.V938fs
LIHC	TCGA-DD-A3A0-01	MEGF11	ENST00000395614.1,ENST00000360698.4,ENST00000395625.2,ENST00000422354.1	chr15	66416236:66416338:66420643:66420749:66545942:66545995,	66420644	66420749	66420676	66420676	Frame_Shift_Del	G	-	p.P22fs
LIHC	TCGA-DD-A3A0-01	DIS3L	ENST00000530537.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66607373:66607553:66610786:66610956:66612908:66613070,	66610787	66610956	66610870	66610870	Frame_Shift_Del	A	-	p.K277fs
LIHC	TCGA-DD-A3A0-01	DIS3L	ENST00000530537.1,ENST00000319194.5,ENST00000319212.4	chr15	66615830:66615923:66618168:66618702:66621307:66621462,	66618169	66618702	66618511	66618511	Frame_Shift_Del	C	-	p.I587fs
LIHC	TCGA-DD-A3A0-01	MAP2K1	ENST00000425818.2	chr15	66679174:66679765:66727364:66727575:66729083:66729230,	66727365	66727575	66727474	66727474	Frame_Shift_Del	A	-	p.K64fs
LIHC	TCGA-DD-A3A0-01	MAP2K1	ENST00000307102.5,ENST00000566326.1	chr15	66777331:66777529:66779565:66779630:66781552:66781614,	66779566	66779630	66779599	66779599	Frame_Shift_Del	T	-	p.I310fs
LIHC	TCGA-DD-A3A0-01	ZWILCH	ENST00000446801.2,ENST00000562645.1,ENST00000561583.1,ENST00000307897.5,ENST00000535141.2,ENST00000565627.1	chr15	66816014:66816086:66819627:66819721:66820194:66820250,	66819628	66819721	66819673	66819673	Frame_Shift_Del	C	-	p.P289fs
LIHC	TCGA-DD-A3A0-01	ZWILCH	ENST00000446801.2,ENST00000562645.1,ENST00000561583.1,ENST00000307897.5,ENST00000535141.2,ENST00000565627.1	chr15	66816014:66816086:66819627:66819721:66820194:66820250,	66819628	66819721	66819684	66819684	Frame_Shift_Del	A	-	p.A292fs
LIHC	TCGA-DD-A3A0-01	LCTL	ENST00000537670.1,ENST00000565875.1,ENST00000341509.5	chr15	66844380:66844507:66845321:66845596:66850059:66850221,	66845322	66845596	66845552	66845552	Frame_Shift_Del	C	-	p.V323fs
LIHC	TCGA-DD-A3A0-01	LCTL	ENST00000537670.1,ENST00000341509.5	chr15	66850319:66850374:66853343:66853439:66853524:66853653,	66853344	66853439	66853425	66853425	Frame_Shift_Del	T	-	p.K208fs
LIHC	TCGA-DD-A3A0-01	LCTL	ENST00000537670.1,ENST00000565875.1,ENST00000341509.5	chr15	66853524:66853653:66855853:66855963:66856248:66856336,	66855854	66855963	66855910	66855910	Frame_Shift_Del	G	-	p.L143fs
LIHC	TCGA-DD-A3A0-01	SMAD3	ENST00000558894.1,ENST00000559937.1,ENST00000560175.1,ENST00000540846.2,ENST00000327367.4,ENST00000559460.1,ENST00000439724.3	chr15	67457232:67457426:67457590:67457722:67459116:67459176,	67457591	67457722	67457640	67457640	Frame_Shift_Del	C	-	p.F150fs
LIHC	TCGA-DD-A3A0-01	IQCH	ENST00000358767.3,ENST00000360277.4,ENST00000514049.1,ENST00000546225.1	chr15	67687628:67687901:67692451:67692643:67709268:67709389,67681168:67681344:67692451:67692643:67709268:67709389,	67692452	67692643	67692539	67692539	Frame_Shift_Del	G	-	p.G665fs
LIHC	TCGA-DD-A3A0-01	MAP2K5	ENST00000559262.1,ENST00000354498.5,ENST00000558392.1,ENST00000439036.1,ENST00000560591.1,ENST00000395476.2,ENST00000178640.5	chr15	67878227:67878268:67879183:67879251:67885263:67885312,	67879184	67879251	67879243	67879243	Frame_Shift_Del	A	-	p.P141fs
LIHC	TCGA-DD-A3A0-01	MAP2K5	ENST00000340972.4,ENST00000354498.5,ENST00000558392.1,ENST00000178640.5	chr15	67995695:67995746:68020253:68020283:68040568:68040595,	68020254	68020283	68020269	68020269	Frame_Shift_Del	T	-	p.F354fs
LIHC	TCGA-DD-A3A0-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68457068:68457142:68466069:68466230:68467974:68468105,	68466070	68466230	68466163	68466163	Frame_Shift_Del	A	-	p.K371fs
LIHC	TCGA-DD-A3A0-01	GLCE	ENST00000261858.2	chr15	69502654:69502745:69548132:69548731:69553425:69553668,	69548133	69548731	69548452	69548452	Frame_Shift_Del	A	-	p.K103fs
LIHC	TCGA-DD-A3A0-01	TLE3	ENST00000558201.1,ENST00000558379.1,ENST00000558939.1,ENST00000557919.1,ENST00000560525.1,ENST00000560589.1,ENST00000557907.1,ENST00000451782.2,ENST00000561453.1,ENST00000557997.1,ENST00000440567.3,ENST00000317509.8	chr15	70356792:70356809:70358352:70358557:70366871:70366934,	70358353	70358557	70358508	70358508	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A3A0-01	TLE3	ENST00000559048.1,ENST00000560939.1	chr15	70356792:70356809:70358352:70358554:70366871:70366934,	70358353	70358554	70358508	70358508	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A3A0-01	LRRC49	ENST00000559685.1,ENST00000559069.1	chr15	71272439:71272523:71276432:71276596:71300717:71300777,71256123:71256271:71276432:71276596:71300717:71300777,	71276433	71276596	71276546	71276546	Frame_Shift_Del	C	-	p.D373fs
LIHC	TCGA-DD-A3A0-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190314	72190314	Frame_Shift_Del	T	-	p.K1510fs
LIHC	TCGA-DD-A3A0-01	MYO9A	ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000567560.1	chr15	72324834:72324929:72338064:72338975:72410020:72410109,	72338065	72338975	72338453	72338453	Frame_Shift_Del	A	-	p.L151fs
LIHC	TCGA-DD-A3A0-01	PKM	ENST00000567087.1,ENST00000564178.1,ENST00000569857.1,ENST00000389093.3,ENST00000562997.1,ENST00000568459.1,ENST00000565154.1,ENST00000561609.1,ENST00000319622.6,ENST00000562784.1,ENST00000335181.5,ENST00000565184.1	chr15	72502123:72502200:72502687:72502819:72509749:72509792,	72502688	72502819	72502772	72502772	Frame_Shift_Del	A	-	p.F98fs
LIHC	TCGA-DD-A3A0-01	PARP6	ENST00000569795.1,ENST00000567440.1,ENST00000544520.1,ENST00000287196.9,ENST00000567263.1,ENST00000260376.7,ENST00000413097.2,ENST00000567974.1,ENST00000419739.3,ENST00000565443.1,ENST00000564610.1	chr15	72546795:72546861:72548805:72548931:72549688:72549761,	72548806	72548931	72548854	72548854	Frame_Shift_Del	G	-	p.P359fs
LIHC	TCGA-DD-A3A0-01	ARIH1	ENST00000379887.4	chr15	72810407:72810475:72837160:72837305:72847611:72847704,	72837161	72837305	72837219	72837219	Frame_Shift_Del	A	-	p.K169fs
LIHC	TCGA-DD-A3A0-01	BBS4	ENST00000569338.1,ENST00000268057.4,ENST00000565160.1,ENST00000561914.1	chr15	72978857:72978905:72987517:72987569:73002040:73002120,72978577:72978592:72987517:72987569:73002040:73002120,	72987518	72987569	72987549	72987549	Frame_Shift_Del	A	-	p.Q19fs
LIHC	TCGA-DD-A3A0-01	BBS4	ENST00000569338.1,ENST00000268057.4,ENST00000565160.1,ENST00000561914.1	chr15	72978857:72978905:72987517:72987569:73002040:73002120,72978577:72978592:72987517:72987569:73002040:73002120,	72987518	72987569	72987554	72987554	Frame_Shift_Del	C	-	p.P21fs
LIHC	TCGA-DD-A3A0-01	ADPGK	ENST00000569534.1,ENST00000567941.1,ENST00000311669.8	chr15	73047976:73047995:73048591:73048788:73052747:73052868,	73048592	73048788	73048717	73048717	Frame_Shift_Del	C	-	p.A239fs
LIHC	TCGA-DD-A3A0-01	ADPGK	ENST00000569534.1,ENST00000567941.1,ENST00000311669.8	chr15	73047976:73047995:73048591:73048788:73052747:73052868,	73048592	73048788	73048766	73048766	Frame_Shift_Del	T	-	p.K222fs
LIHC	TCGA-DD-A3A0-01	NEO1	ENST00000261908.6,ENST00000560262.1,ENST00000560328.1,ENST00000339362.5,ENST00000558964.1	chr15	73547057:73547170:73551106:73551217:73552611:73552806,	73551107	73551217	73551116	73551116	Frame_Shift_Del	G	-	p.R701fs
LIHC	TCGA-DD-A3A0-01	NPTN	ENST00000563691.1,ENST00000287226.8,ENST00000545878.1	chr15	73884348:73884478:73889362:73889710:73925465:73925562,	73889363	73889710	73889409	73889409	Frame_Shift_Del	G	-	p.P131fs
LIHC	TCGA-DD-A3A0-01	CD276	ENST00000560928.1,ENST00000567582.1	chr15	73991980:73992059:73994720:73994934:73995112:73995162,	73994721	73994934	73994900	73994900	Frame_Shift_Del	T	-	p.D128fs
LIHC	TCGA-DD-A3A0-01	CD276	ENST00000318443.5,ENST00000561260.1,ENST00000561213.1,ENST00000560786.2	chr15	73991980:73992059:73994595:73994934:73995112:73995162,	73994596	73994934	73994900	73994900	Frame_Shift_Del	T	-	p.D128fs
LIHC	TCGA-DD-A3A0-01	LOXL1	ENST00000261921.7	chr15	74218798:74220226:74235194:74235303:74238757:74238895,	74235195	74235303	74235217	74235217	Frame_Shift_Del	C	-	p.D375fs
LIHC	TCGA-DD-A3A0-01	LOXL1	ENST00000261921.7,ENST00000566011.1	chr15	74235194:74235303:74238757:74238895:74239407:74239564,	74238758	74238895	74238851	74238851	Frame_Shift_Del	C	-	p.L435fs
LIHC	TCGA-DD-A3A0-01	PML	ENST00000268058.3,ENST00000435786.2,ENST00000566068.1,ENST00000268059.6,ENST00000395135.3,ENST00000569477.1	chr15	74317220:74317268:74325496:74325755:74326818:74326871,74324912:74325056:74325496:74325755:74326818:74326871,	74325497	74325755	74325550	74325550	Frame_Shift_Del	C	-	p.C436fs
LIHC	TCGA-DD-A3A0-01	PML	ENST00000569965.1,ENST00000436891.3	chr15	74317220:74317268:74325496:74325763:74326818:74326871,74324912:74325056:74325496:74325763:74326818:74326871,	74325497	74325763	74325550	74325550	Frame_Shift_Del	C	-	p.C436fs
LIHC	TCGA-DD-A3A0-01	CYP11A1	ENST00000541301.1	chr15	74637542:74637584:74640240:74640396:74659657:74659795,74636196:74636333:74640240:74640396:74659657:74659968,	74640241	74640396	74640318	74640318	Frame_Shift_Del	G	-	p.P116fs
LIHC	TCGA-DD-A3A0-01	CYP11A1	ENST00000466978.1	chr15	74637542:74637584:74640240:74640585:74658056:74658499,	74640241	74640585	74640318	74640318	Frame_Shift_Del	G	-	p.P116fs
LIHC	TCGA-DD-A3A0-01	SEMA7A	ENST00000567345.1,ENST00000261918.4,ENST00000542748.1	chr15	74710217:74710310:74710608:74710650:74711141:74711293,	74710609	74710650	74710627	74710627	Frame_Shift_Del	C	-	p.G118fs
LIHC	TCGA-DD-A3A0-01	EDC3	ENST00000315127.4,ENST00000568176.1,ENST00000426797.3	chr15	74932901:74932960:74948073:74948409:74963795:74963940,	74948074	74948409	74948129	74948129	Frame_Shift_Del	G	-	p.P255fs
LIHC	TCGA-DD-A3A0-01	NEIL1	ENST00000561643.1,ENST00000564784.1,ENST00000569035.1,ENST00000355059.4	chr15	75641504:75641680:75644451:75644571:75644664:75644728,	75644452	75644571	75644491	75644491	Frame_Shift_Del	C	-	p.D158fs
LIHC	TCGA-DD-A3A0-01	MAN2C1	ENST00000565801.1,ENST00000565683.1,ENST00000563441.1,ENST00000569482.1,ENST00000566634.1,ENST00000421803.2,ENST00000267978.5	chr15	75654225:75654288:75654683:75654794:75654982:75655089,	75654684	75654794	75654689	75654689	Frame_Shift_Del	C	-	p.E335fs
LIHC	TCGA-DD-A3A0-01	MAN2C1	ENST00000561615.1,ENST00000565683.1,ENST00000569355.1,ENST00000563539.1,ENST00000569482.1,ENST00000563622.1,ENST00000421803.2,ENST00000267978.5	chr15	75659851:75659975:75660413:75660539:75660823:75660933,	75660414	75660539	75660533	75660533	Frame_Shift_Del	A	-	p.F36fs
LIHC	TCGA-DD-A3A0-01	UBE2Q2	ENST00000338677.4,ENST00000426727.2	chr15	76165768:76165909:76175706:76175765:76189335:76189402,76171438:76171529:76175706:76175765:76191767:76191835,	76175707	76175765	76175719	76175719	Frame_Shift_Del	T	-	p.F280fs
LIHC	TCGA-DD-A3A0-01	ETFA	ENST00000560044.1	chr15	76584959:76585041:76587931:76588078:76603690:76603737,76584771:76584854:76587931:76588078:76603690:76603737,76584771:76584854:76587931:76588078:76602272:76602405,76584959:76585041:76587931:76588078:76602272:76602405,	76587932	76588078	76588024	76588024	Frame_Shift_Del	A	-	p.S32fs
LIHC	TCGA-DD-A3A0-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76696864:76697020:76726418:76726651:76763552:76763676,	76726419	76726651	76726477	76726477	Frame_Shift_Del	T	-	p.M839fs
LIHC	TCGA-DD-A3A0-01	RCN2	ENST00000394885.3	chr15	77227866:77228063:77236098:77236212:77239761:77239830,	77236099	77236212	77236150	77236150	Frame_Shift_Del	C	-	p.P167fs
LIHC	TCGA-DD-A3A0-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425902	77425902	Frame_Shift_Del	T	-	p.K1174fs
LIHC	TCGA-DD-A3A0-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77471293	77471293	Frame_Shift_Del	C	-	p.R992fs
LIHC	TCGA-DD-A3A0-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77473399	77473399	Frame_Shift_Del	T	-	p.K290fs
LIHC	TCGA-DD-A3A0-01	IDH3A	ENST00000558554.1,ENST00000559803.1,ENST00000558933.1,ENST00000558509.1,ENST00000299518.2,ENST00000441490.2	chr15	78441750:78441772:78447554:78447617:78452433:78452548,78441750:78441772:78447554:78447617:78449914:78449973,78441750:78441772:78447554:78447617:78449889:78449921,	78447555	78447617	78447569	78447569	Frame_Shift_Del	G	-	p.L14fs
LIHC	TCGA-DD-A3A0-01	WDR61	ENST00000560610.1	chr15	78582292:78582441:78584957:78585227:78585508:78585614,	78584958	78585227	78584986	78584986	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-DD-A3A0-01	WDR61	ENST00000560569.1,ENST00000559848.1,ENST00000558311.1,ENST00000267973.2	chr15	78582292:78582441:78584957:78585130:78585508:78585614,	78584958	78585130	78584986	78584986	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-DD-A3A0-01	IREB2	ENST00000258886.8,ENST00000560840.1,ENST00000558570.1,ENST00000560440.1	chr15	78732136:78732223:78755263:78755429:78757592:78757606,	78755264	78755429	78755395	78755395	Frame_Shift_Del	T	-	p.F81fs
LIHC	TCGA-DD-A3A0-01	IREB2	ENST00000258886.8,ENST00000560840.1,ENST00000558570.1,ENST00000560440.1	chr15	78732136:78732223:78755263:78755429:78757592:78757606,	78755264	78755429	78755424	78755424	Frame_Shift_Del	T	-	p.D89fs
LIHC	TCGA-DD-A3A0-01	IREB2	ENST00000258886.8,ENST00000558525.1,ENST00000560440.1	chr15	78758612:78758831:78762873:78762943:78764082:78764143,	78762874	78762943	78762889	78762889	Frame_Shift_Del	A	-	p.L215fs
LIHC	TCGA-DD-A3A0-01	CHRNB4	ENST00000261751.3	chr15	78916749:78917633:78921308:78922287:78923417:78923527,	78921309	78922287	78921420	78921420	Frame_Shift_Del	G	-	p.P409fs
LIHC	TCGA-DD-A3A0-01	MORF4L1	ENST00000558522.1,ENST00000379535.4,ENST00000558830.1,ENST00000558502.1,ENST00000426013.2,ENST00000331268.5,ENST00000559751.1,ENST00000560422.1,ENST00000559930.1,ENST00000559158.1,ENST00000559345.1,ENST00000559690.1,ENST00000559258.1,ENST00000559244.1	chr15	79178540:79178569:79179610:79179691:79183330:79183356,	79179611	79179691	79179678	79179678	Frame_Shift_Del	A	-	p.K143fs
LIHC	TCGA-DD-A3A0-01	CTSH	ENST00000525807.1,ENST00000527715.1,ENST00000533777.1,ENST00000220166.5,ENST00000534237.1	chr15	79214458:79214547:79215334:79215460:79217675:79217782,	79215335	79215460	79215392	79215392	Frame_Shift_Del	T	-	p.N292fs
LIHC	TCGA-DD-A3A0-01	FAH	ENST00000539156.1,ENST00000261755.5,ENST00000407106.1,ENST00000559217.1,ENST00000561421.1	chr15	80472465:80472567:80473383:80473501:80478471:80478682,	80473384	80473501	80473480	80473480	Frame_Shift_Del	G	-	p.G317fs
LIHC	TCGA-DD-A3A0-01	FSD2	ENST00000334574.8,ENST00000541889.1	chr15	83448996:83449019:83451546:83451777:83455262:83455358,	83451547	83451777	83451706	83451706	Frame_Shift_Del	T	-	p.K269fs
LIHC	TCGA-DD-A3A0-01	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83933061	83933061	Frame_Shift_Del	T	-	p.K314fs
LIHC	TCGA-DD-A3A0-01	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83933484	83933484	Frame_Shift_Del	A	-	p.F173fs
LIHC	TCGA-DD-A3A0-01	ADAMTSL3	ENST00000567476.1,ENST00000569510.1,ENST00000561483.1,ENST00000565653.1,ENST00000286744.5	chr15	84373140:84373260:84442274:84442402:84473401:84473447,	84442275	84442402	84442359	84442359	Frame_Shift_Del	G	-	p.G94fs
LIHC	TCGA-DD-A3A0-01	ADAMTSL3	ENST00000567476.1,ENST00000569510.1,ENST00000561483.1,ENST00000286744.5	chr15	84473401:84473447:84488562:84488799:84506840:84506967,	84488563	84488799	84488675	84488675	Frame_Shift_Del	C	-	p.A159fs
LIHC	TCGA-DD-A3A0-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84659837:84659966:84683293:84683476:84685134:84685251,	84683294	84683476	84683351	84683351	Frame_Shift_Del	T	-	p.V1344fs
LIHC	TCGA-DD-A3A0-01	ADAMTSL3	ENST00000286744.5	chr15	84700086:84700184:84705524:84705739:84706451:84708594,	84705525	84705739	84705691	84705691	Frame_Shift_Del	A	-	p.K1643fs
LIHC	TCGA-DD-A3A0-01	ADAMTSL3	ENST00000567476.1	chr15	84700086:84700184:84705524:84705756:84706514:84708179,	84705525	84705756	84705691	84705691	Frame_Shift_Del	A	-	p.K1643fs
LIHC	TCGA-DD-A3A0-01	ZSCAN2	ENST00000540894.1	chr15	85147131:85147564:85163832:85165945:85166506:85166867,	85163833	85165945	85163851	85163851	Frame_Shift_Del	A	-	p.E142fs
LIHC	TCGA-DD-A3A0-01	SEC11A	ENST00000560266.1	chr15	85213252:85213300:85223943:85224063:85230855:85231005,85213955:85214013:85223943:85224063:85234765:85234875,85213955:85214013:85223943:85224063:85230855:85230999,85223162:85223200:85223943:85224063:85230855:85231005,	85223944	85224063	85223955	85223955	Frame_Shift_Del	C	-	p.G140fs
LIHC	TCGA-DD-A3A0-01	ALPK3	ENST00000258888.5	chr15	85402473:85402621:85403006:85403134:85403267:85403303,	85403007	85403134	85403051	85403051	Frame_Shift_Del	C	-	p.S1539fs
LIHC	TCGA-DD-A3A0-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557819.2,ENST00000557957.1,ENST00000559742.1	chr15	85619092:85619149:85619963:85620018:85626786:85626875,	85619964	85620018	85620010	85620010	Frame_Shift_Del	T	-	p.F180fs
LIHC	TCGA-DD-A3A0-01	PDE8A	ENST00000560789.1,ENST00000559742.1	chr15	85626786:85626875:85641178:85641267:85643245:85643297,	85641179	85641267	85641209	85641209	Frame_Shift_Del	A	-	p.K295fs
LIHC	TCGA-DD-A3A0-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85658669:85658718:85659214:85659350:85660871:85661063,	85659215	85659350	85659320	85659320	Frame_Shift_Del	T	-	p.I502fs
LIHC	TCGA-DD-A3A0-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000561024.1,ENST00000557957.1,ENST00000559742.1	chr15	85664027:85664245:85666291:85666424:85669437:85669605,	85666292	85666424	85666398	85666398	Frame_Shift_Del	C	-	p.P687fs
LIHC	TCGA-DD-A3A0-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86311874	86311874	Frame_Shift_Del	G	-	p.L390fs
LIHC	TCGA-DD-A3A0-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86312868	86312868	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-DD-A3A0-01	DET1	ENST00000557842.1	chr15	89054789:89054817:89055581:89056371:89060012:89060204,	89055582	89056371	89056308	89056308	Frame_Shift_Del	G	-	p.P520fs
LIHC	TCGA-DD-A3A0-01	DET1	ENST00000557842.1	chr15	89070829:89071017:89073853:89074704:89074843:89074946,	89073854	89074704	89073968	89073968	Frame_Shift_Del	A	-	p.F334fs
LIHC	TCGA-DD-A3A0-01	FANCI	ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89811629:89811756:89816607:89816700:89817398:89817535,	89816608	89816700	89816689	89816689	Frame_Shift_Del	T	-	p.F322fs
LIHC	TCGA-DD-A3A0-01	FANCI	ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89819941:89820122:89821917:89822005:89824400:89824531,	89821918	89822005	89821998	89821998	Frame_Shift_Del	T	-	p.H458fs
LIHC	TCGA-DD-A3A0-01	FANCI	ENST00000566895.1	chr15	89824400:89824531:89824995:89826481:89828326:89828449,	89824996	89826481	89826401	89826401	Frame_Shift_Del	T	-	p.F540fs
LIHC	TCGA-DD-A3A0-01	FANCI	ENST00000566895.1,ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89843530:89843616:89844556:89844673:89847094:89847146,	89844557	89844673	89844571	89844571	Frame_Shift_Del	T	-	p.N968fs
LIHC	TCGA-DD-A3A0-01	POLG	ENST00000268124.5,ENST00000442287.2	chr15	89859747:89860058:89860606:89860767:89861771:89861947,	89860607	89860767	89860711	89860711	Frame_Shift_Del	A	-	p.F1180fs
LIHC	TCGA-DD-A3A0-01	WDR93	ENST00000268130.7,ENST00000560294.1,ENST00000444934.2	chr15	90272253:90272324:90272913:90273000:90274673:90274793,	90272914	90273000	90272957	90272957	Frame_Shift_Del	T	-	p.N389fs
LIHC	TCGA-DD-A3A0-01	ANPEP	ENST00000300060.6	chr15	90347721:90347848:90348308:90348448:90348551:90348603,	90348309	90348448	90348436	90348436	Frame_Shift_Del	G	-	p.P257fs
LIHC	TCGA-DD-A3A0-01	ANPEP	ENST00000560028.1	chr15	90347721:90347848:90348176:90348448:90348551:90348603,	90348177	90348448	90348436	90348436	Frame_Shift_Del	G	-	p.P257fs
LIHC	TCGA-DD-A3A0-01	SEMA4B	ENST00000559074.1,ENST00000332496.6,ENST00000411539.2,ENST00000560089.1,ENST00000558065.1,ENST00000379122.3	chr15	90764981:90764997:90766790:90766972:90767069:90767154,	90766791	90766972	90766945	90766945	Frame_Shift_Del	T	-	p.L339fs
LIHC	TCGA-DD-A3A0-01	BLM	ENST00000355112.3,ENST00000560509.1	chr15	91298040:91298168:91303376:91303509:91303823:91304052,	91303377	91303509	91303430	91303430	Frame_Shift_Del	A	-	p.K381fs
LIHC	TCGA-DD-A3A0-01	BLM	ENST00000559724.1	chr15	91298040:91298168:91303210:91303509:91303823:91304052,	91303211	91303509	91303430	91303430	Frame_Shift_Del	A	-	p.K381fs
LIHC	TCGA-DD-A3A0-01	HDDC3	ENST00000394272.3,ENST00000561036.1,ENST00000494993.1	chr15	91474566:91474635:91474933:91475174:91475284:91475340,	91474934	91475174	91475004	91475004	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-DD-A3A0-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91486141:91486312:91488121:91488293:91489843:91490144,	91488122	91488293	91488144	91488144	Frame_Shift_Del	G	-	p.V335fs
LIHC	TCGA-DD-A3A0-01	UNC45A	ENST00000418476.2,ENST00000394275.2	chr15	91491371:91491513:91491883:91492024:91492545:91492673,	91491884	91492024	91491910	91491910	Frame_Shift_Del	G	-	p.A573fs
LIHC	TCGA-DD-A3A0-01	UNC45A	ENST00000418476.2,ENST00000487875.1,ENST00000394275.2,ENST00000471780.1	chr15	91496158:91496276:91496384:91496540:91496688:91497323,	91496385	91496540	91496432	91496432	Frame_Shift_Del	G	-	p.L808fs
LIHC	TCGA-DD-A3A0-01	PRC1	ENST00000560914.1,ENST00000394249.3,ENST00000442656.2,ENST00000361188.5,ENST00000559828.1,ENST00000361919.3	chr15	91517814:91517961:91519905:91520001:91522387:91522524,	91519906	91520001	91519948	91519948	Frame_Shift_Del	T	-	p.K387fs
LIHC	TCGA-DD-A3A0-01	PRC1	ENST00000394249.3,ENST00000557763.1,ENST00000361188.5,ENST00000553494.1,ENST00000361919.3	chr15	91525138:91525211:91527247:91527370:91537636:91537725,91525138:91525211:91527247:91527370:91527922:91528055,	91527248	91527370	91527293	91527293	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A3A0-01	PRC1	ENST00000555791.1	chr15	91525138:91525211:91527135:91527370:91527922:91528055,	91527136	91527370	91527293	91527293	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A3A0-01	ST8SIA2	ENST00000268164.3,ENST00000539113.1,ENST00000555434.1	chr15	92981582:92981840:92987865:92988159:93007329:93007614,	92987866	92988159	92987905	92987905	Frame_Shift_Del	G	-	p.V196fs
LIHC	TCGA-DD-A3A0-01	RGMA	ENST00000425933.2,ENST00000542321.2,ENST00000557301.1,ENST00000329082.7,ENST00000543599.1	chr15	93588185:93588935:93595222:93595737:93616144:93616260,	93595223	93595737	93595357	93595357	Frame_Shift_Del	G	-	p.L171fs
LIHC	TCGA-DD-A3A0-01	RGMA	ENST00000425933.2,ENST00000542321.2,ENST00000557301.1,ENST00000329082.7,ENST00000543599.1	chr15	93588185:93588935:93595222:93595737:93616144:93616260,	93595223	93595737	93595394	93595394	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-DD-A3A0-01	IGF1R	ENST00000558762.1,ENST00000268035.6	chr15	99473463:99473534:99478052:99478282:99478544:99478595,	99478053	99478282	99478270	99478270	Frame_Shift_Del	T	-	p.N1058fs
LIHC	TCGA-DD-A3A0-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670335	99670335	Frame_Shift_Del	G	-	p.E589fs
LIHC	TCGA-DD-A3A0-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670619	99670619	Frame_Shift_Del	A	-	p.E684fs
LIHC	TCGA-DD-A3A0-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670989	99670989	Frame_Shift_Del	T	-	p.P807fs
LIHC	TCGA-DD-A3A0-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99671398	99671398	Frame_Shift_Del	C	-	p.P944fs
LIHC	TCGA-DD-A3A0-01	ADAMTS17	ENST00000558960.1	chr15	100821433:100821606:100871093:100871259:100882025:100882210,	100871094	100871259	100871198	100871198	Frame_Shift_Del	C	-	p.G171fs
LIHC	TCGA-DD-A3A0-01	ASB7	ENST00000332783.7	chr15	101152370:101152632:101169641:101170247:101188527:101189738,	101169642	101170247	101170037	101170037	Frame_Shift_Del	G	-	p.G203fs
LIHC	TCGA-DD-A3A0-01	ALDH1A3	ENST00000558033.1,ENST00000329841.5	chr15	101433149:101433211:101434158:101434287:101436137:101436219,	101434159	101434287	101434167	101434167	Frame_Shift_Del	C	-	p.F182fs
LIHC	TCGA-DD-A3A0-01	LRRK1	ENST00000284395.5,ENST00000525284.1,ENST00000532145.1,ENST00000531270.1,ENST00000388948.3	chr15	101605556:101606410:101606844:101606946:101608875:101609273,	101606845	101606946	101606898	101606898	Frame_Shift_Del	G	-	p.R1938fs
LIHC	TCGA-DD-A3A0-01	PCSK6	ENST00000348070.1,ENST00000561109.1,ENST00000561177.1,ENST00000398185.2	chr15	101866585:101866684:101871855:101871894:101872056:101872090,	101871856	101871894	101871864	101871864	Frame_Shift_Del	A	-	p.L689fs
LIHC	TCGA-DD-A3A0-01	PCSK6	ENST00000560902.1	chr15	101906400:101906537:101910539:101910728:101922296:101922329,101872056:101872236:101910539:101910728:101922296:101922329,	101910540	101910728	101910577	101910577	Frame_Shift_Del	A	-	p.S561fs
LIHC	TCGA-DD-A3A0-01	WASH4P	ENST00000462860.1,ENST00000538848.2,ENST00000483390.2,ENST00000326592.9	chr16	66540:66738:66915:67051:67290:67427,	66916	67051	67023	67023	Frame_Shift_Del	G	-	p.L205fs
LIHC	TCGA-DD-A3A0-01	NPRL3	ENST00000445810.1	chr16	162658:162774:167299:167374:169124:169254,162658:162774:167299:167374:180520:180590,	167300	167374	167321	167321	Frame_Shift_Del	A	-	p.F124fs
LIHC	TCGA-DD-A3A0-01	PDIA2	ENST00000404312.1,ENST00000467212.1,ENST00000219406.6	chr16	335311:335437:335505:335703:336352:336473,	335506	335703	335582	335582	Frame_Shift_Del	C	-	p.A333fs
LIHC	TCGA-DD-A3A0-01	PDIA2	ENST00000404312.1,ENST00000482665.1,ENST00000435833.1,ENST00000467212.1,ENST00000219406.6	chr16	336553:336735:336834:336945:337068:337114,	336835	336945	336870	336870	Frame_Shift_Del	T	-	p.T486fs
LIHC	TCGA-DD-A3A0-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347117	347117	Frame_Shift_Del	T	-	p.I632fs
LIHC	TCGA-DD-A3A0-01	AXIN1	ENST00000354866.3,ENST00000481769.1,ENST00000461023.1,ENST00000262320.3	chr16	354303:354441:359972:360069:364542:364683,	359973	360069	359997	359997	Frame_Shift_Del	C	-	p.G364fs
LIHC	TCGA-DD-A3A0-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396537	396537	Frame_Shift_Del	G	-	p.A163fs
LIHC	TCGA-DD-A3A0-01	TMEM8A	ENST00000250930.3,ENST00000431232.2	chr16	426135:426455:426543:426812:427036:427164,	426544	426812	426578	426578	Frame_Shift_Del	C	-	p.G290fs
LIHC	TCGA-DD-A3A0-01	CAPN15	ENST00000219611.2	chr16	586028:586142:596816:598287:598992:599201,	596817	598287	596886	596886	Frame_Shift_Del	C	-	p.N16fs
LIHC	TCGA-DD-A3A0-01	CAPN15	ENST00000219611.2	chr16	599287:599471:599614:599838:601301:601427,	599615	599838	599773	599773	Frame_Shift_Del	C	-	p.N667fs
LIHC	TCGA-DD-A3A0-01	PIGQ	ENST00000443147.1,ENST00000026218.5,ENST00000321878.5,ENST00000420990.2,ENST00000409527.2	chr16	629126:629180:630182:630263:630857:630972,	630183	630263	630259	630259	Frame_Shift_Del	C	-	p.T471fs
LIHC	TCGA-DD-A3A0-01	RHBDL1	ENST00000219551.2,ENST00000352681.3,ENST00000450775.2	chr16	726338:726497:726671:726896:726970:727119,	726672	726896	726861	726861	Frame_Shift_Del	C	-	p.P197fs
LIHC	TCGA-DD-A3A0-01	CHTF18	ENST00000565787.1	chr16	841160:841370:842223:842347:842438:842590,	842224	842347	842336	842336	Frame_Shift_Del	G	-	p.G634fs
LIHC	TCGA-DD-A3A0-01	CHTF18	ENST00000262315.9,ENST00000471202.1,ENST00000464728.1,ENST00000455171.2	chr16	843143:843274:844053:844201:845131:845356,	844054	844201	844102	844102	Frame_Shift_Del	G	-	p.L645fs
LIHC	TCGA-DD-A3A0-01	LMF1	ENST00000262301.11,ENST00000570014.1,ENST00000565198.1,ENST00000566627.1,ENST00000399843.2,ENST00000543238.1,ENST00000568897.1,ENST00000545827.2	chr16	921316:921341:929569:929737:943006:943072,	929570	929737	929590	929590	Frame_Shift_Del	C	-	p.V293fs
LIHC	TCGA-DD-A3A0-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000569107.1,ENST00000564927.1,ENST00000564231.1,ENST00000348261.5,ENST00000562079.1	chr16	1265522:1265593:1266931:1267010:1267918:1268040,	1266932	1267010	1266934	1266934	Frame_Shift_Del	G	-	p.V1749fs
LIHC	TCGA-DD-A3A0-01	TBL3	ENST00000564171.1,ENST00000568546.1,ENST00000569628.1,ENST00000569792.1	chr16	2026069:2026115:2026211:2026315:2026814:2026962,	2026212	2026315	2026271	2026271	Frame_Shift_Del	G	-	p.Q416fs
LIHC	TCGA-DD-A3A0-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2133695:2133817:2134228:2134716:2134951:2135027,	2134229	2134716	2134294	2134294	Frame_Shift_Del	C	-	p.I1357fs
LIHC	TCGA-DD-A3A0-01	TRAF7	ENST00000326181.6,ENST00000564067.1	chr16	2221572:2221606:2222191:2222375:2222465:2222590,	2222192	2222375	2222260	2222260	Frame_Shift_Del	G	-	p.G182fs
LIHC	TCGA-DD-A3A0-01	RNPS1	ENST00000569598.2,ENST00000565870.1,ENST00000561518.1,ENST00000561718.1,ENST00000301730.8,ENST00000566458.1,ENST00000320225.5,ENST00000566397.1,ENST00000565678.1,ENST00000568631.1,ENST00000397086.2	chr16	2304029:2304064:2305585:2305727:2312278:2312432,	2305586	2305727	2305663	2305663	Frame_Shift_Del	G	-	p.P247fs
LIHC	TCGA-DD-A3A0-01	RNPS1	ENST00000564601.1	chr16	2314315:2314332:2314573:2314761:2318055:2318072,2314315:2314332:2314573:2314761:2317575:2317853,	2314574	2314761	2314622	2314622	Frame_Shift_Del	T	-	p.K9fs
LIHC	TCGA-DD-A3A0-01	ABCA3	ENST00000301732.5,ENST00000563623.1	chr16	2358450:2358624:2367283:2367404:2367648:2367765,	2367284	2367404	2367394	2367394	Frame_Shift_Del	T	-	p.N334fs
LIHC	TCGA-DD-A3A0-01	PRSS27	ENST00000302641.3	chr16	2764312:2764337:2765718:2765881:2766500:2766527,	2765719	2765881	2765875	2765875	Frame_Shift_Del	C	-	p.G27fs
LIHC	TCGA-DD-A3A0-01	SRRM2	ENST00000301740.8	chr16	2818081:2818262:2818997:2819285:2820352:2820466,	2818998	2819285	2819229	2819229	Frame_Shift_Del	C	-	p.G2655fs
LIHC	TCGA-DD-A3A0-01	PRSS33	ENST00000576886.1	chr16	2835002:2835172:2835799:2835962:2836089:2836122,	2835800	2835962	2835898	2835898	Frame_Shift_Del	C	-	p.W48fs
LIHC	TCGA-DD-A3A0-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983149:2983583:2983716:2983980:2987121:2987271,	2983717	2983980	2983786	2983786	Frame_Shift_Del	G	-	p.R440fs
LIHC	TCGA-DD-A3A0-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983802:2983980:2987121:2987385:2988184:2988457,	2987122	2987385	2987150	2987150	Frame_Shift_Del	G	-	p.L563fs
LIHC	TCGA-DD-A3A0-01	TNFRSF12A	ENST00000341627.5	chr16	3070379:3070492:3071555:3071690:3071771:3071964,	3071556	3071690	3071574	3071574	Frame_Shift_Del	C	-	p.C127fs
LIHC	TCGA-DD-A3A0-01	IL32	ENST00000549213.1,ENST00000551122.1,ENST00000396887.3,ENST00000528652.2	chr16	3118180:3118240:3118990:3119110:3119281:3119413,	3118991	3119110	3119072	3119072	Frame_Shift_Del	C	-	p.P95fs
LIHC	TCGA-DD-A3A0-01	ZNF213	ENST00000574575.1	chr16	3187650:3187680:3188418:3188542:3188745:3188819,3187650:3187680:3188418:3188542:3188975:3189099,3187650:3187680:3188418:3188542:3190689:3191356,	3188419	3188542	3188457	3188457	Frame_Shift_Del	C	-	p.G146fs
LIHC	TCGA-DD-A3A0-01	ZNF213	ENST00000576863.1	chr16	3187650:3187680:3188354:3188542:3188745:3188819,	3188355	3188542	3188457	3188457	Frame_Shift_Del	C	-	p.G146fs
LIHC	TCGA-DD-A3A0-01	ZNF200	ENST00000575948.1,ENST00000414144.2	chr16	3282832:3282921:3283505:3283836:3285111:3285360,3282832:3282921:3283505:3283836:3284986:3285070,	3283506	3283836	3283724	3283724	Frame_Shift_Del	G	-	p.P11fs
LIHC	TCGA-DD-A3A0-01	ZSCAN32	ENST00000573719.1	chr16	3440422:3440517:3443648:3443814:3447191:3447194,3434839:3434941:3443648:3443814:3447191:3447194,	3443649	3443814	3443661	3443661	Frame_Shift_Del	C	-	p.E174fs
LIHC	TCGA-DD-A3A0-01	ZSCAN32	ENST00000576500.1	chr16	3443648:3443814:3447191:3447744:3450944:3450964,3440422:3440517:3447191:3447744:3450944:3450964,3434839:3434941:3447191:3447744:3450944:3450964,	3447192	3447744	3447489	3447489	Frame_Shift_Del	T	-	p.K23fs
LIHC	TCGA-DD-A3A0-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820653	3820653	Frame_Shift_Del	G	-	p.P933fs
LIHC	TCGA-DD-A3A0-01	ANKS3	ENST00000591185.1,ENST00000592077.1,ENST00000585773.1,ENST00000589035.1,ENST00000590803.1,ENST00000590193.1,ENST00000446014.2,ENST00000304283.4,ENST00000591653.1,ENST00000588513.1	chr16	4747353:4747417:4747977:4748063:4748427:4748600,	4747978	4748063	4748016	4748016	Frame_Shift_Del	G	-	p.P591fs
LIHC	TCGA-DD-A3A0-01	ANKS3	ENST00000586166.1,ENST00000592077.1,ENST00000585773.1,ENST00000590803.1,ENST00000590193.1,ENST00000590730.1,ENST00000446014.2,ENST00000592698.1,ENST00000304283.4,ENST00000450067.2,ENST00000591653.1,ENST00000592421.1,ENST00000586605.1	chr16	4752167:4752243:4755095:4755254:4764051:4764187,	4755096	4755254	4755215	4755215	Frame_Shift_Del	G	-	p.P250fs
LIHC	TCGA-DD-A3A0-01	C16orf71	ENST00000299320.5,ENST00000590191.1	chr16	4796927:4797026:4797343:4797635:4798725:4799396,	4797344	4797635	4797428	4797428	Frame_Shift_Del	G	-	p.K455fs
LIHC	TCGA-DD-A3A0-01	ROGDI	ENST00000587377.1,ENST00000591392.1,ENST00000589543.1,ENST00000585653.1,ENST00000322048.7	chr16	4850498:4850579:4851267:4851322:4851503:4851586,	4851268	4851322	4851305	4851305	Frame_Shift_Del	C	-	p.G73fs
LIHC	TCGA-DD-A3A0-01	ROGDI	ENST00000588201.1	chr16	4850498:4850579:4851050:4851322:4851503:4851586,	4851051	4851322	4851305	4851305	Frame_Shift_Del	C	-	p.G73fs
LIHC	TCGA-DD-A3A0-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000589389.1,ENST00000321919.9,ENST00000586901.1,ENST00000591451.1	chr16	4873821:4873908:4881979:4882222:4882774:4882913,	4881980	4882222	4882049	4882049	Frame_Shift_Del	G	-	p.S156fs
LIHC	TCGA-DD-A3A0-01	UBN1	ENST00000262376.6,ENST00000545171.1	chr16	4897911:4898211:4902879:4903167:4907990:4908077,	4902880	4903167	4902976	4902976	Frame_Shift_Del	T	-	p.F20fs
LIHC	TCGA-DD-A3A0-01	RBFOX1	ENST00000547372.1,ENST00000547605.1,ENST00000535565.2,ENST00000551752.1,ENST00000422070.4,ENST00000550418.1,ENST00000355637.4,ENST00000436368.2,ENST00000547338.1,ENST00000552089.1,ENST00000311745.5,ENST00000340209.4	chr16	7657286:7657340:7680604:7680685:7703816:7703848,	7680605	7680685	7680656	7680656	Frame_Shift_Del	C	-	p.A248fs
LIHC	TCGA-DD-A3A0-01	PMM2	ENST00000568602.1	chr16	8895655:8895767:8898623:8898700:8900172:8900264,8896146:8896246:8898623:8898700:8900172:8900264,	8898624	8898700	8898630	8898630	Frame_Shift_Del	A	-	p.E62fs
LIHC	TCGA-DD-A3A0-01	ATF7IP2	ENST00000396559.1,ENST00000535850.1,ENST00000568027.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10527381:10527506:10531957:10532092:10534220:10534319,	10531958	10532092	10532088	10532088	Frame_Shift_Del	T	-	p.L365fs
LIHC	TCGA-DD-A3A0-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551340	10551340	Frame_Shift_Del	A	-	p.K437fs
LIHC	TCGA-DD-A3A0-01	TEKT5	ENST00000283025.2	chr16	10721357:10721656:10729620:10729775:10769815:10770038,	10729621	10729775	10729656	10729656	Frame_Shift_Del	G	-	p.P402fs
LIHC	TCGA-DD-A3A0-01	CIITA	ENST00000324288.8,ENST00000537380.1,ENST00000571186.1,ENST00000570546.1,ENST00000381835.5,ENST00000576601.1	chr16	10992526:10992589:10992781:10992859:10995370:10995415,	10992782	10992859	10992844	10992844	Frame_Shift_Del	A	-	p.K141fs
LIHC	TCGA-DD-A3A0-01	CIITA	ENST00000573309.1	chr16	10992526:10992589:10992778:10992859:10995370:10995415,	10992779	10992859	10992844	10992844	Frame_Shift_Del	A	-	p.K141fs
LIHC	TCGA-DD-A3A0-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11000676	11000676	Frame_Shift_Del	C	-	p.P443fs
LIHC	TCGA-DD-A3A0-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11000676	11000676	Frame_Shift_Del	C	-	p.P443fs
LIHC	TCGA-DD-A3A0-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001497	11001497	Frame_Shift_Del	C	-	p.F716fs
LIHC	TCGA-DD-A3A0-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001497	11001497	Frame_Shift_Del	C	-	p.F716fs
LIHC	TCGA-DD-A3A0-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001893	11001893	Frame_Shift_Del	G	-	p.L848fs
LIHC	TCGA-DD-A3A0-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001893	11001893	Frame_Shift_Del	G	-	p.L848fs
LIHC	TCGA-DD-A3A0-01	CLEC16A	ENST00000494853.1,ENST00000409790.1	chr16	11076734:11076848:11096930:11097162:11114049:11114182,	11096931	11097162	11097131	11097131	Frame_Shift_Del	A	-	p.S424fs
LIHC	TCGA-DD-A3A0-01	GSPT1	ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11966975:11967028:11969617:11969786:11971263:11971437,11966975:11967028:11969617:11969786:11969942:11970032,	11969618	11969786	11969747	11969747	Frame_Shift_Del	T	-	p.S578fs
LIHC	TCGA-DD-A3A0-01	GSPT1	ENST00000565267.1,ENST00000439887.2	chr16	11988810:11988844:11990414:11990639:11991696:11991738,	11990415	11990639	11990488	11990488	Frame_Shift_Del	T	-	p.K197fs
LIHC	TCGA-DD-A3A0-01	GSPT1	ENST00000568849.1,ENST00000434724.2,ENST00000563468.1,ENST00000420576.2	chr16	11988810:11988844:11990414:11990642:11991696:11991738,	11990415	11990642	11990488	11990488	Frame_Shift_Del	T	-	p.K197fs
LIHC	TCGA-DD-A3A0-01	GSPT1	ENST00000565267.1,ENST00000439887.2	chr16	11988810:11988844:11990414:11990639:11991696:11991738,	11990415	11990639	11990564	11990564	Frame_Shift_Del	C	-	p.G173fs
LIHC	TCGA-DD-A3A0-01	GSPT1	ENST00000568849.1,ENST00000434724.2,ENST00000563468.1,ENST00000420576.2	chr16	11988810:11988844:11990414:11990642:11991696:11991738,	11990415	11990642	11990564	11990564	Frame_Shift_Del	C	-	p.G173fs
LIHC	TCGA-DD-A3A0-01	ERCC4	ENST00000575156.1,ENST00000574194.1,ENST00000311895.7	chr16	14021978:14022092:14024566:14024747:14026013:14026096,	14024567	14024747	14024618	14024618	Frame_Shift_Del	A	-	p.K282fs
LIHC	TCGA-DD-A3A0-01	BFAR	ENST00000563313.1	chr16	14726830:14726875:14738130:14738466:14743660:14743830,14726830:14726875:14738130:14738466:14748922:14749028,14726830:14726875:14738130:14738466:14742244:14742309,14726830:14726875:14738130:14738466:14755748:14755922,	14738131	14738466	14738283	14738283	Frame_Shift_Del	T	-	p.I27fs
LIHC	TCGA-DD-A3A0-01	BFAR	ENST00000261658.2	chr16	14738144:14738466:14743660:14743830:14748922:14749028,14742400:14742449:14743660:14743830:14748922:14749028,	14743661	14743830	14743805	14743805	Frame_Shift_Del	T	-	p.F205fs
LIHC	TCGA-DD-A3A0-01	PDXDC1	ENST00000563679.1,ENST00000450288.2,ENST00000535621.2,ENST00000569715.1,ENST00000447912.2,ENST00000325823.7,ENST00000570001.1,ENST00000455313.2,ENST00000396410.4	chr16	15116560:15116611:15120499:15120563:15122734:15122823,	15120500	15120563	15120547	15120547	Frame_Shift_Del	G	-	p.Q396fs
LIHC	TCGA-DD-A3A0-01	NTAN1	ENST00000565187.1,ENST00000287706.3,ENST00000566419.1	chr16	15138190:15138264:15141298:15141407:15149747:15149774,15138190:15138264:15141298:15141407:15141711:15141777,	15141299	15141407	15141328	15141328	Frame_Shift_Del	T	-	p.K110fs
LIHC	TCGA-DD-A3A0-01	NTAN1	ENST00000563940.1	chr16	15138190:15138264:15141274:15141407:15141711:15141777,	15141275	15141407	15141328	15141328	Frame_Shift_Del	T	-	p.K110fs
LIHC	TCGA-DD-A3A0-01	NTAN1	ENST00000567420.1	chr16	15141711:15141777:15141853:15141956:15149597:15149644,	15141854	15141956	15141913	15141913	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A3A0-01	RRN3	ENST00000540462.1,ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1	chr16	15163926:15164111:15164977:15165108:15166806:15166937,	15164978	15165108	15165070	15165070	Frame_Shift_Del	T	-	p.K389fs
LIHC	TCGA-DD-A3A0-01	NDE1	ENST00000396354.1,ENST00000570727.1,ENST00000396353.2,ENST00000342673.5,ENST00000572756.1,ENST00000396355.1	chr16	15758592:15758718:15761142:15761296:15771657:15771801,	15761143	15761296	15761232	15761232	Frame_Shift_Del	A	-	p.E58fs
LIHC	TCGA-DD-A3A0-01	MYH11	ENST00000570785.1,ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15847250:15847365:15850197:15850371:15851683:15851770,	15850198	15850371	15850347	15850347	Frame_Shift_Del	G	-	p.L535fs
LIHC	TCGA-DD-A3A0-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000571505.1,ENST00000300036.5,ENST00000396324.3	chr16	15892516:15892544:15917111:15917268:15931764:15932126,	15917112	15917268	15917183	15917183	Frame_Shift_Del	C	-	p.G144fs
LIHC	TCGA-DD-A3A0-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978038	15978038	Frame_Shift_Del	T	-	p.K18fs
LIHC	TCGA-DD-A3A0-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16043433:16043656:16101672:16101849:16103632:16103758,	16101673	16101849	16101774	16101774	Frame_Shift_Del	C	-	p.F50fs
LIHC	TCGA-DD-A3A0-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000574224.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16130328:16130460:16138306:16138537:16139692:16139870,	16138307	16138537	16138361	16138361	Frame_Shift_Del	T	-	p.S289fs
LIHC	TCGA-DD-A3A0-01	ABCC6	ENST00000205557.7,ENST00000456970.2	chr16	16259479:16259790:16263502:16263710:16267140:16267261,	16263503	16263710	16263662	16263662	Frame_Shift_Del	G	-	p.L946fs
LIHC	TCGA-DD-A3A0-01	NOMO3	ENST00000399336.4,ENST00000575225.1,ENST00000538468.1,ENST00000263012.6	chr16	16344784:16344937:16345819:16345957:16346289:16346379,	16345820	16345957	16345943	16345943	Frame_Shift_Del	G	-	p.G288fs
LIHC	TCGA-DD-A3A0-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18847681:18847854:18848574:18848765:18849335:18849554,	18848575	18848765	18848606	18848606	Frame_Shift_Del	C	-	p.V2525fs
LIHC	TCGA-DD-A3A0-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000563448.1,ENST00000389467.3	chr16	18849872:18850011:18851019:18851268:18852886:18853116,	18851020	18851268	18851223	18851223	Frame_Shift_Del	G	-	p.R2248fs
LIHC	TCGA-DD-A3A0-01	SMG1	ENST00000565224.1,ENST00000565324.1,ENST00000446231.2,ENST00000389467.3,ENST00000561947.1	chr16	18893486:18893660:18895391:18895489:18896411:18896484,	18895392	18895489	18895442	18895442	Frame_Shift_Del	A	-	p.S357fs
LIHC	TCGA-DD-A3A0-01	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19046997:19047145:19049195:19049369:19051610:19051768,	19049196	19049369	19049319	19049319	Frame_Shift_Del	T	-	p.F267fs
LIHC	TCGA-DD-A3A0-01	SYT17	ENST00000562034.1,ENST00000562711.2,ENST00000355377.2,ENST00000568115.1	chr16	19191712:19191861:19194849:19195469:19234366:19234487,	19194850	19195469	19194993	19194993	Frame_Shift_Del	C	-	p.P98fs
LIHC	TCGA-DD-A3A0-01	TMC5	ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19451281:19452148:19455402:19455572:19460863:19460953,	19455403	19455572	19455457	19455457	Frame_Shift_Del	C	-	p.D281fs
LIHC	TCGA-DD-A3A0-01	TMC5	ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19460863:19460953:19471556:19471656:19474601:19474689,	19471557	19471656	19471643	19471643	Frame_Shift_Del	A	-	p.K379fs
LIHC	TCGA-DD-A3A0-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000381414.4	chr16	19481002:19481147:19483409:19483565:19485446:19485556,	19483410	19483565	19483537	19483537	Frame_Shift_Del	T	-	p.V637fs
LIHC	TCGA-DD-A3A0-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548241	19548241	Frame_Shift_Del	A	-	p.E417fs
LIHC	TCGA-DD-A3A0-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548360	19548360	Frame_Shift_Del	A	-	p.K457fs
LIHC	TCGA-DD-A3A0-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548747	19548747	Frame_Shift_Del	C	-	p.R587fs
LIHC	TCGA-DD-A3A0-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19554199:19554316:19556118:19556220:19556415:19556532,	19556119	19556220	19556212	19556212	Frame_Shift_Del	T	-	p.L860fs
LIHC	TCGA-DD-A3A0-01	IQCK	ENST00000320394.6,ENST00000541926.1,ENST00000564186.1,ENST00000564955.1,ENST00000433597.2,ENST00000568126.1	chr16	19745019:19745149:19746674:19746772:19800159:19800244,19745019:19745149:19746674:19746772:19775169:19775222,	19746675	19746772	19746766	19746766	Frame_Shift_Del	T	-	p.C156fs
LIHC	TCGA-DD-A3A0-01	IQCK	ENST00000320394.6,ENST00000561839.1,ENST00000568300.2,ENST00000308214.9,ENST00000564955.1,ENST00000433597.2,ENST00000562762.1	chr16	19775356:19775434:19838347:19838459:19867808:19867883,19800159:19800244:19838347:19838459:19867808:19867883,	19838348	19838459	19838433	19838433	Frame_Shift_Del	T	-	p.I259fs
LIHC	TCGA-DD-A3A0-01	GP2	ENST00000573897.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20329723:20329752:20330941:20331090:20331583:20331652,	20330942	20331090	20331062	20331062	Frame_Shift_Del	T	-	p.N296fs
LIHC	TCGA-DD-A3A0-01	GP2	ENST00000381362.4	chr16	20334190:20334301:20335137:20335578:20337659:20337789,20334702:20334711:20335137:20335578:20337659:20337789,	20335138	20335578	20335569	20335569	Frame_Shift_Del	T	-	p.N35fs
LIHC	TCGA-DD-A3A0-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20352433:20352658:20355345:20355494:20357447:20357656,	20355346	20355494	20355362	20355362	Frame_Shift_Del	G	-	p.L472fs
LIHC	TCGA-DD-A3A0-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20355350:20355494:20357447:20357656:20359544:20359652,	20357448	20357656	20357596	20357596	Frame_Shift_Del	C	-	p.G378fs
LIHC	TCGA-DD-A3A0-01	ACSM2B	ENST00000565232.1,ENST00000569327.1,ENST00000329697.6,ENST00000569364.1,ENST00000414188.2,ENST00000567001.1	chr16	20566764:20566798:20570558:20570769:20575990:20576175,	20570559	20570769	20570719	20570719	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A3A0-01	ACSM1	ENST00000519031.1	chr16	20638577:20638638:20648060:20648773:20651782:20651900,	20648061	20648773	20648725	20648725	Frame_Shift_Del	T	-	p.M8fs
LIHC	TCGA-DD-A3A0-01	ACSM1	ENST00000519745.1	chr16	20638577:20638638:20648692:20648773:20651782:20651900,20638577:20638638:20648692:20648773:20673115:20673195,	20648693	20648773	20648725	20648725	Frame_Shift_Del	T	-	p.M8fs
LIHC	TCGA-DD-A3A0-01	ERI2	ENST00000563117.1,ENST00000562987.1,ENST00000569729.1,ENST00000357967.4,ENST00000300005.3,ENST00000564349.1	chr16	20810584:20810673:20811278:20811360:20811623:20811636,	20811279	20811360	20811320	20811320	Frame_Shift_Del	A	-	p.L108fs
LIHC	TCGA-DD-A3A0-01	DNAH3	ENST00000261383.3,ENST00000415178.1	chr16	20944475:20944829:20946669:20946807:20947970:20948175,	20946670	20946807	20946785	20946785	Frame_Shift_Del	G	-	p.P3961fs
LIHC	TCGA-DD-A3A0-01	DNAH3	ENST00000261383.3,ENST00000415178.1,ENST00000572640.1	chr16	21011545:21011840:21014425:21014529:21030945:21031191,	21014426	21014529	21014444	21014444	Frame_Shift_Del	T	-	p.K2036fs
LIHC	TCGA-DD-A3A0-01	METTL9	ENST00000567404.1	chr16	21610912:21611219:21623965:21624156:21629185:21629330,21611038:21611149:21623965:21624156:21629185:21629330,21608542:21608621:21623965:21624156:21629185:21629330,	21623966	21624156	21624120	21624120	Frame_Shift_Del	T	-	p.V107fs
LIHC	TCGA-DD-A3A0-01	VWA3A	ENST00000566668.1	chr16	22143032:22143050:22144104:22144416:22145688:22145759,	22144105	22144416	22144315	22144315	Frame_Shift_Del	C	-	p.T657fs
LIHC	TCGA-DD-A3A0-01	VWA3A	ENST00000299840.6,ENST00000563389.1,ENST00000568328.1,ENST00000389397.4,ENST00000389398.5	chr16	22143032:22143050:22144220:22144416:22145688:22145759,	22144221	22144416	22144315	22144315	Frame_Shift_Del	C	-	p.T657fs
LIHC	TCGA-DD-A3A0-01	VWA3A	ENST00000299840.6,ENST00000389398.5	chr16	22157592:22157665:22159482:22159627:22161107:22161252,	22159483	22159627	22159588	22159588	Frame_Shift_Del	T	-	p.V84fs
LIHC	TCGA-DD-A3A0-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000563755.1,ENST00000389398.5	chr16	22159482:22159627:22161107:22161252:22162015:22162167,	22161108	22161252	22161222	22161222	Frame_Shift_Del	G	-	p.Q135fs
LIHC	TCGA-DD-A3A0-01	EEF2K	ENST00000263026.5	chr16	22284946:22285071:22291518:22291697:22295207:22297954,	22291519	22291697	22291616	22291616	Frame_Shift_Del	C	-	p.P663fs
LIHC	TCGA-DD-A3A0-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339834	22339834	Frame_Shift_Del	C	-	p.P625fs
LIHC	TCGA-DD-A3A0-01	CDR2	ENST00000564542.1	chr16	22361021:22361170:22376222:22376335:22433481:22433535,	22376223	22376335	22376228	22376228	Frame_Shift_Del	T	-	p.I63fs
LIHC	TCGA-DD-A3A0-01	USP31	ENST00000219689.7	chr16	23113639:23113784:23116761:23116897:23117533:23117626,	23116762	23116897	23116864	23116864	Frame_Shift_Del	T	-	p.K329fs
LIHC	TCGA-DD-A3A0-01	SCNN1B	ENST00000343070.2	chr16	23313590:23313758:23359912:23360231:23364121:23364234,	23359913	23360231	23360223	23360223	Frame_Shift_Del	C	-	p.S101fs
LIHC	TCGA-DD-A3A0-01	COG7	ENST00000307149.5,ENST00000567821.1	chr16	23421615:23421681:23424768:23424885:23428287:23428442,	23424769	23424885	23424798	23424798	Frame_Shift_Del	T	-	p.E460fs
LIHC	TCGA-DD-A3A0-01	GGA2	ENST00000569182.1,ENST00000309859.4	chr16	23486273:23486382:23489688:23489822:23490203:23490232,	23489689	23489822	23489728	23489728	Frame_Shift_Del	A	-	p.L419fs
LIHC	TCGA-DD-A3A0-01	UBFD1	ENST00000395878.3,ENST00000219638.4,ENST00000567212.1,ENST00000571064.1	chr16	23569270:23569600:23570788:23570997:23573526:23573592,	23570789	23570997	23570859	23570859	Frame_Shift_Del	A	-	p.I142fs
LIHC	TCGA-DD-A3A0-01	PALB2	ENST00000565038.1,ENST00000261584.4,ENST00000568219.1	chr16	23635391:23635415:23637556:23637718:23640524:23640596,	23637557	23637718	23637581	23637581	Frame_Shift_Del	T	-	p.K908fs
LIHC	TCGA-DD-A3A0-01	ERN2	ENST00000562562.1,ENST00000457008.2,ENST00000256797.4	chr16	23706520:23706710:23707214:23707299:23711859:23711953,	23707215	23707299	23707229	23707229	Frame_Shift_Del	C	-	p.G580fs
LIHC	TCGA-DD-A3A0-01	ERN2	ENST00000562562.1,ENST00000457008.2,ENST00000256797.4	chr16	23706520:23706710:23707214:23707299:23711859:23711953,	23707215	23707299	23707259	23707259	Frame_Shift_Del	G	-	p.P570fs
LIHC	TCGA-DD-A3A0-01	RBBP6	ENST00000564314.1,ENST00000319715.4	chr16	24578463:24578826:24579112:24579214:24580065:24581434,	24579113	24579214	24579187	24579187	Frame_Shift_Del	A	-	p.Q676fs
LIHC	TCGA-DD-A3A0-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24741573:24741621:24762046:24762134:24769659:24769681,	24762047	24762134	24762093	24762093	Frame_Shift_Del	A	-	p.K35fs
LIHC	TCGA-DD-A3A0-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24769659:24769681:24788253:24788679:24800552:24803138,	24788254	24788679	24788537	24788537	Frame_Shift_Del	A	-	p.L149fs
LIHC	TCGA-DD-A3A0-01	TNRC6A	ENST00000491718.1,ENST00000395799.3	chr16	24815497:24815640:24816025:24816172:24816334:24816472,	24816026	24816172	24816089	24816089	Frame_Shift_Del	C	-	p.P1302fs
LIHC	TCGA-DD-A3A0-01	SLC5A11	ENST00000488922.2,ENST00000449109.2,ENST00000347898.3,ENST00000539472.1,ENST00000569071.1,ENST00000565769.1	chr16	24883480:24883540:24886947:24887052:24888578:24888684,	24886948	24887052	24886952	24886952	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-DD-A3A0-01	ARHGAP17	ENST00000303665.5,ENST00000575656.1,ENST00000289968.6	chr16	24966012:24966051:24970991:24971073:24971231:24971300,	24970992	24971073	24971011	24971011	Frame_Shift_Del	G	-	p.P235fs
LIHC	TCGA-DD-A3A0-01	ARHGAP17	ENST00000303665.5,ENST00000575656.1,ENST00000289968.6	chr16	24966012:24966051:24970991:24971073:24971231:24971300,	24970992	24971073	24971041	24971041	Frame_Shift_Del	T	-	p.K225fs
LIHC	TCGA-DD-A3A0-01	IL21R	ENST00000395755.1,ENST00000564089.1,ENST00000395754.4,ENST00000337929.3	chr16	27441376:27441441:27445667:27445770:27448808:27449008,	27445668	27445770	27445747	27445747	Frame_Shift_Del	C	-	p.H43fs
LIHC	TCGA-DD-A3A0-01	GTF3C1	ENST00000561623.1,ENST00000568569.1,ENST00000356183.4	chr16	27495531:27495674:27497317:27497475:27499547:27499552,	27497318	27497475	27497455	27497455	Frame_Shift_Del	T	-	p.S1241fs
LIHC	TCGA-DD-A3A0-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27500363:27500499:27500922:27501064:27503658:27503836,	27500923	27501064	27500995	27500995	Frame_Shift_Del	A	-	p.L1074fs
LIHC	TCGA-DD-A3A0-01	KIAA0556	ENST00000567894.1,ENST00000261588.4	chr16	27709648:27709821:27710854:27710920:27712909:27713016,	27710855	27710920	27710875	27710875	Frame_Shift_Del	A	-	p.A378fs
LIHC	TCGA-DD-A3A0-01	KIAA0556	ENST00000573850.1	chr16	27715216:27715319:27720034:27720241:27732878:27733016,	27720035	27720241	27720056	27720056	Frame_Shift_Del	A	-	p.K474fs
LIHC	TCGA-DD-A3A0-01	KIAA0556	ENST00000567894.1,ENST00000261588.4	chr16	27715216:27715319:27720025:27720241:27732878:27733016,	27720026	27720241	27720056	27720056	Frame_Shift_Del	A	-	p.K474fs
LIHC	TCGA-DD-A3A0-01	KIAA0556	ENST00000261588.4	chr16	27751361:27752241:27760904:27761627:27763039:27763245,	27760905	27761627	27761362	27761362	Frame_Shift_Del	C	-	p.D1027fs
LIHC	TCGA-DD-A3A0-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000565284.1,ENST00000564337.1	chr16	28146536:28146645:28157414:28157524:28163979:28164106,	28157415	28157524	28157475	28157475	Frame_Shift_Del	A	-	p.L425fs
LIHC	TCGA-DD-A3A0-01	XPO6	ENST00000565698.1	chr16	28188540:28188653:28192261:28192352:28222686:28222797,28188540:28188653:28192261:28192352:28220307:28220376,	28192262	28192352	28192299	28192299	Frame_Shift_Del	A	-	p.F19fs
LIHC	TCGA-DD-A3A0-01	CLN3	ENST00000566083.1,ENST00000565316.1,ENST00000565688.1,ENST00000359984.7,ENST00000567963.1,ENST00000569430.1,ENST00000563874.1,ENST00000360019.2,ENST00000395653.4,ENST00000333496.9,ENST00000564574.1,ENST00000568452.1,ENST00000566824.1,ENST00000354630.5,ENST00000561689.1,ENST00000535392.1,ENST00000357857.9	chr16	28495326:28495439:28497667:28497811:28497898:28497971,	28497668	28497811	28497681	28497681	Frame_Shift_Del	G	-	p.L224fs
LIHC	TCGA-DD-A3A0-01	CLN3	ENST00000561505.1,ENST00000568558.1,ENST00000357806.7,ENST00000395653.4,ENST00000566824.1,ENST00000561689.1	chr16	28498982:28499062:28499911:28499983:28500610:28500707,28498776:28498862:28499911:28499983:28500610:28500707,	28499912	28499983	28499956	28499956	Frame_Shift_Del	G	-	p.H84fs
LIHC	TCGA-DD-A3A0-01	SULT1A2	ENST00000533150.1	chr16	28603583:28603802:28606687:28606996:28607103:28607255,	28606688	28606996	28606823	28606823	Frame_Shift_Del	C	-	p.A108fs
LIHC	TCGA-DD-A3A0-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28877754	28877754	Frame_Shift_Del	G	-	p.V113fs
LIHC	TCGA-DD-A3A0-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28878096	28878096	Frame_Shift_Del	T	-	p.R227fs
LIHC	TCGA-DD-A3A0-01	CD19	ENST00000567541.1,ENST00000324662.3	chr16	28943288:28943409:28943666:28943933:28944231:28944435,	28943667	28943933	28943698	28943698	Frame_Shift_Del	G	-	p.K40fs
LIHC	TCGA-DD-A3A0-01	SPNS1	ENST00000566059.1,ENST00000323081.8,ENST00000565975.1,ENST00000564476.1,ENST00000334536.8,ENST00000311008.11,ENST00000568388.1,ENST00000567771.1,ENST00000568900.1	chr16	28986822:28986878:28989228:28989365:28990475:28990565,	28989229	28989365	28989309	28989309	Frame_Shift_Del	G	-	p.G131fs
LIHC	TCGA-DD-A3A0-01	LAT	ENST00000564447.1,ENST00000360872.5,ENST00000395456.2,ENST00000454369.2,ENST00000395461.3,ENST00000568899.1,ENST00000566415.1	chr16	29001094:29001160:29001253:29001340:29001509:29001834,	29001254	29001340	29001294	29001294	Frame_Shift_Del	G	-	p.E221fs
LIHC	TCGA-DD-A3A0-01	QPRT	ENST00000395384.4	chr16	29690502:29690531:29705984:29706520:29708316:29708448,	29705985	29706520	29706145	29706145	Frame_Shift_Del	T	-	p.P58fs
LIHC	TCGA-DD-A3A0-01	MAZ	ENST00000219782.6	chr16	29819999:29820062:29820860:29821085:29821397:29821408,	29820861	29821085	29820908	29820908	Frame_Shift_Del	G	-	p.G443fs
LIHC	TCGA-DD-A3A0-01	SEZ6L2	ENST00000537485.1,ENST00000350527.3,ENST00000308713.5	chr16	29906579:29906781:29907041:29907181:29908142:29908232,	29907042	29907181	29907117	29907117	Frame_Shift_Del	G	-	p.P192fs
LIHC	TCGA-DD-A3A0-01	KCTD13	ENST00000308768.5	chr16	29916332:29916472:29917813:29918429:29922298:29922494,	29917814	29918429	29918359	29918359	Frame_Shift_Del	G	-	p.P275fs
LIHC	TCGA-DD-A3A0-01	KCTD13	ENST00000563264.1,ENST00000566842.1,ENST00000308768.5,ENST00000568995.1,ENST00000568000.1	chr16	29923135:29923188:29923280:29923370:29934510:29934558,	29923281	29923370	29923364	29923364	Frame_Shift_Del	T	-	p.R141fs
LIHC	TCGA-DD-A3A0-01	TMEM219	ENST00000279396.6,ENST00000566848.1,ENST00000414689.2	chr16	29979345:29979575:29982728:29982899:29984270:29984339,	29982729	29982899	29982827	29982827	Frame_Shift_Del	C	-	p.H228fs
LIHC	TCGA-DD-A3A0-01	ALDOA	ENST00000569545.1,ENST00000395248.1,ENST00000563060.2,ENST00000566897.1,ENST00000412304.2,ENST00000338110.5,ENST00000569798.1,ENST00000564546.1,ENST00000564595.2,ENST00000562679.1	chr16	30079966:30080021:30080138:30080299:30080626:30080710,	30080139	30080299	30080256	30080256	Frame_Shift_Del	A	-	p.E166fs
LIHC	TCGA-DD-A3A0-01	ALDOA	ENST00000395240.3	chr16	30079966:30080021:30080138:30080311:30080626:30080710,	30080139	30080311	30080256	30080256	Frame_Shift_Del	A	-	p.E166fs
LIHC	TCGA-DD-A3A0-01	ALDOA	ENST00000569545.1,ENST00000395248.1,ENST00000563060.2,ENST00000566897.1,ENST00000412304.2,ENST00000338110.5,ENST00000569798.1,ENST00000564546.1,ENST00000564521.2,ENST00000564595.2,ENST00000562679.1	chr16	30080138:30080299:30080626:30080710:30080819:30080832,	30080627	30080710	30080669	30080669	Frame_Shift_Del	G	-	p.G195fs
LIHC	TCGA-DD-A3A0-01	PPP4C	ENST00000279387.7,ENST00000563200.1,ENST00000563732.1,ENST00000567040.1,ENST00000561610.1,ENST00000563597.1	chr16	30093804:30093855:30094066:30094168:30094714:30094726,	30094067	30094168	30094105	30094105	Frame_Shift_Del	G	-	p.M80fs
LIHC	TCGA-DD-A3A0-01	PPP4C	ENST00000566749.1	chr16	30093806:30093855:30094066:30094284:30094714:30094888,	30094067	30094284	30094105	30094105	Frame_Shift_Del	G	-	p.M80fs
LIHC	TCGA-DD-A3A0-01	GDPD3	ENST00000566434.1	chr16	30116164:30116330:30119441:30119585:30119693:30119753,	30119442	30119585	30119553	30119553	Frame_Shift_Del	A	-	p.L267fs
LIHC	TCGA-DD-A3A0-01	GDPD3	ENST00000360688.3,ENST00000406256.3	chr16	30116164:30116330:30119533:30119585:30119693:30119753,	30119534	30119585	30119553	30119553	Frame_Shift_Del	A	-	p.L267fs
LIHC	TCGA-DD-A3A0-01	CORO1A	ENST00000563778.1,ENST00000561815.1,ENST00000219150.5,ENST00000569970.1,ENST00000568982.1,ENST00000565497.1,ENST00000570045.1,ENST00000569203.1	chr16	30196529:30196728:30197918:30198041:30198359:30198404,30196529:30196728:30197918:30198041:30198136:30198259,	30197919	30198041	30197965	30197965	Frame_Shift_Del	C	-	p.A82fs
LIHC	TCGA-DD-A3A0-01	SLX1A	ENST00000345535.4	chr16	30206060:30206112:30208294:30208422:30208590:30208678,	30208295	30208422	30208388	30208388	Frame_Shift_Del	G	-	p.G226fs
LIHC	TCGA-DD-A3A0-01	CD2BP2	ENST00000569466.1,ENST00000305596.3	chr16	30365221:30365379:30365504:30365643:30365924:30366028,	30365505	30365643	30365545	30365545	Frame_Shift_Del	C	-	p.G59fs
LIHC	TCGA-DD-A3A0-01	CD2BP2	ENST00000569466.1,ENST00000305596.3	chr16	30365221:30365379:30365504:30365643:30365924:30366028,	30365505	30365643	30365596	30365596	Frame_Shift_Del	T	-	p.K42fs
LIHC	TCGA-DD-A3A0-01	TBC1D10B	ENST00000490703.1,ENST00000409939.3,ENST00000464644.1	chr16	30371070:30371162:30376220:30376327:30376425:30376533,	30376221	30376327	30376226	30376226	Frame_Shift_Del	C	-	p.G422fs
LIHC	TCGA-DD-A3A0-01	SEPT1	ENST00000321367.3,ENST00000568577.1,ENST00000571393.1,ENST00000573615.1,ENST00000566517.1,ENST00000563957.2	chr16	30392659:30392794:30393080:30393204:30393413:30393500,	30393081	30393204	30393107	30393107	Frame_Shift_Del	A	-	p.F140fs
LIHC	TCGA-DD-A3A0-01	ITGAL	ENST00000563615.1,ENST00000358164.5,ENST00000356798.6	chr16	30516709:30516783:30518035:30518177:30521681:30521716,	30518036	30518177	30518099	30518099	Frame_Shift_Del	G	-	p.L810fs
LIHC	TCGA-DD-A3A0-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000567322.1,ENST00000287463.4	chr16	30665550:30665660:30665949:30666535:30666671:30666741,	30665950	30666535	30665998	30665998	Frame_Shift_Del	T	-	p.L237fs
LIHC	TCGA-DD-A3A0-01	SRCAP	ENST00000344771.4,ENST00000483083.1,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30723582:30723760:30723999:30724136:30724528:30724698,	30724000	30724136	30724016	30724016	Frame_Shift_Del	T	-	p.H670fs
LIHC	TCGA-DD-A3A0-01	SRCAP	ENST00000483083.1,ENST00000262518.4	chr16	30733445:30733607:30733883:30734069:30734283:30734550,	30733884	30734069	30733986	30733986	Frame_Shift_Del	C	-	p.T1270fs
LIHC	TCGA-DD-A3A0-01	SRCAP	ENST00000483083.1,ENST00000262518.4	chr16	30733445:30733607:30733883:30734069:30734283:30734550,	30733884	30734069	30734013	30734013	Frame_Shift_Del	C	-	p.T1279fs
LIHC	TCGA-DD-A3A0-01	SRCAP	ENST00000483083.1,ENST00000262518.4	chr16	30733445:30733607:30733883:30734069:30734283:30734550,	30733884	30734069	30734031	30734031	Frame_Shift_Del	C	-	p.A1285fs
LIHC	TCGA-DD-A3A0-01	PHKG2	ENST00000563913.1,ENST00000563588.1,ENST00000424889.3	chr16	30767502:30767593:30767687:30767841:30767910:30768036,	30767688	30767841	30767801	30767801	Frame_Shift_Del	C	-	p.S254fs
LIHC	TCGA-DD-A3A0-01	PHKG2	ENST00000328273.7	chr16	30767502:30767593:30767675:30767841:30767910:30768036,	30767676	30767841	30767801	30767801	Frame_Shift_Del	C	-	p.S254fs
LIHC	TCGA-DD-A3A0-01	RNF40	ENST00000563683.1	chr16	30776745:30776820:30777699:30777879:30778061:30778193,	30777700	30777879	30777764	30777764	Frame_Shift_Del	C	-	p.A393fs
LIHC	TCGA-DD-A3A0-01	PRSS8	ENST00000317508.6	chr16	31144199:31144274:31144546:31144709:31146474:31146492,	31144547	31144709	31144575	31144575	Frame_Shift_Del	C	-	p.V80fs
LIHC	TCGA-DD-A3A0-01	PRSS8	ENST00000317508.6	chr16	31144199:31144274:31144546:31144709:31146474:31146492,	31144547	31144709	31144689	31144689	Frame_Shift_Del	G	-	p.Q42fs
LIHC	TCGA-DD-A3A0-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
LIHC	TCGA-DD-A3A0-01	FUS	ENST00000380244.3	chr16	31193718:31193743:31193833:31193985:31195178:31195323,31193718:31193743:31193833:31193985:31195181:31195323,	31193834	31193985	31193856	31193856	Frame_Shift_Del	C	-	p.P21fs
LIHC	TCGA-DD-A3A0-01	FUS	ENST00000487509.2,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31195181:31195323:31195529:31195717:31196259:31196500,	31195530	31195717	31195645	31195645	Frame_Shift_Del	C	-	p.P152fs
LIHC	TCGA-DD-A3A0-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31288240:31288370:31289287:31289430:31308834:31308948,	31289288	31289430	31289316	31289316	Frame_Shift_Del	C	-	p.N414fs
LIHC	TCGA-DD-A3A0-01	ITGAX	ENST00000268296.4,ENST00000562522.1	chr16	31368351:31368422:31368573:31368685:31371020:31371151,	31368574	31368685	31368645	31368645	Frame_Shift_Del	C	-	p.G130fs
LIHC	TCGA-DD-A3A0-01	ITGAD	ENST00000389202.2	chr16	31435422:31435524:31435787:31435898:31437335:31437826,	31435788	31435898	31435853	31435853	Frame_Shift_Del	G	-	p.V1109fs
LIHC	TCGA-DD-A3A0-01	SHCBP1	ENST00000566016.1	chr16	46651545:46651661:46652116:46652284:46655168:46655263,	46652117	46652284	46652195	46652195	Frame_Shift_Del	T	-	p.T65fs
LIHC	TCGA-DD-A3A0-01	VPS35	ENST00000568784.2,ENST00000299138.7	chr16	46693588:46694563:46695629:46695773:46696154:46696394,	46695630	46695773	46695735	46695735	Frame_Shift_Del	T	-	p.K702fs
LIHC	TCGA-DD-A3A0-01	VPS35	ENST00000568784.2,ENST00000299138.7	chr16	46693588:46694563:46695629:46695773:46696154:46696394,	46695630	46695773	46695771	46695771	Frame_Shift_Del	A	-	p.L690fs
LIHC	TCGA-DD-A3A0-01	VPS35	ENST00000568784.2,ENST00000562420.1,ENST00000299138.7	chr16	46696154:46696394:46696894:46697074:46702841:46702964,	46696895	46697074	46696970	46696970	Frame_Shift_Del	A	-	p.F584fs
LIHC	TCGA-DD-A3A0-01	VPS35	ENST00000568784.2,ENST00000299138.7,ENST00000569950.1	chr16	46711226:46711310:46712854:46713068:46714582:46714765,	46712855	46713068	46712950	46712950	Frame_Shift_Del	T	-	p.R209fs
LIHC	TCGA-DD-A3A0-01	ORC6	ENST00000219097.2,ENST00000563599.1,ENST00000566860.1,ENST00000563306.1	chr16	46726293:46726457:46727004:46727094:46729473:46729586,	46727005	46727094	46727021	46727021	Frame_Shift_Del	C	-	p.P77fs
LIHC	TCGA-DD-A3A0-01	NETO2	ENST00000303155.5,ENST00000562435.1	chr16	47117524:47117712:47120136:47120250:47143393:47143622,	47120137	47120250	47120224	47120224	Frame_Shift_Del	A	-	p.C304fs
LIHC	TCGA-DD-A3A0-01	PHKB	ENST00000323584.5,ENST00000299167.8,ENST00000566037.2,ENST00000563376.1,ENST00000455779.1,ENST00000567402.1,ENST00000566044.1,ENST00000570047.2	chr16	47533666:47533805:47536901:47537001:47545575:47545642,	47536902	47537001	47536968	47536968	Frame_Shift_Del	A	-	p.G117fs
LIHC	TCGA-DD-A3A0-01	PHKB	ENST00000323584.5,ENST00000455779.1	chr16	47697587:47697645:47698795:47698886:47703125:47703328,	47698796	47698886	47698865	47698865	Frame_Shift_Del	T	-	p.T795fs
LIHC	TCGA-DD-A3A0-01	ABCC12	ENST00000534418.1,ENST00000528693.1,ENST00000448542.1,ENST00000532494.1,ENST00000529504.1,ENST00000311303.3,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48158123:48158195:48162369:48162648:48164698:48164806,	48162370	48162648	48162578	48162578	Frame_Shift_Del	A	-	p.L436fs
LIHC	TCGA-DD-A3A0-01	ABCC11	ENST00000353782.5,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48209168:48209328:48210834:48211024:48212507:48212597,	48210835	48211024	48210976	48210976	Frame_Shift_Del	G	-	p.Q1133fs
LIHC	TCGA-DD-A3A0-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48237138:48237211:48239323:48239448:48242335:48242407,	48239324	48239448	48239345	48239345	Frame_Shift_Del	C	-	p.G596fs
LIHC	TCGA-DD-A3A0-01	LONP2	ENST00000285737.4,ENST00000570174.1,ENST00000566755.1,ENST00000535754.1,ENST00000416006.3	chr16	48329995:48330076:48333572:48333699:48337082:48337194,	48333573	48333699	48333668	48333668	Frame_Shift_Del	C	-	p.P544fs
LIHC	TCGA-DD-A3A0-01	LONP2	ENST00000285737.4,ENST00000566755.1,ENST00000535754.1,ENST00000565867.2	chr16	48368222:48368269:48381417:48381625:48382010:48382201,	48381418	48381625	48381495	48381495	Frame_Shift_Del	G	-	p.V672fs
LIHC	TCGA-DD-A3A0-01	HEATR3	ENST00000299192.7,ENST00000285767.4	chr16	50104088:50104201:50106515:50106625:50109481:50109622,	50106516	50106625	50106592	50106592	Frame_Shift_Del	T	-	p.F197fs
LIHC	TCGA-DD-A3A0-01	BRD7	ENST00000394688.3	chr16	50354573:50354688:50355892:50355949:50357497:50357609,50354573:50354685:50355892:50355949:50357497:50357609,	50355893	50355949	50355902	50355902	Frame_Shift_Del	T	-	p.K497fs
LIHC	TCGA-DD-A3A0-01	CYLD	ENST00000564326.1,ENST00000566206.1,ENST00000311559.9,ENST00000568704.2,ENST00000540145.1,ENST00000427738.3,ENST00000398568.2,ENST00000569418.1	chr16	50820765:50820857:50821696:50821763:50825468:50825601,	50821697	50821763	50821723	50821723	Frame_Shift_Del	T	-	p.F690fs
LIHC	TCGA-DD-A3A0-01	CHD9	ENST00000564845.1,ENST00000566029.1,ENST00000564255.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53243691:53243725:53256555:53256667:53260277:53260315,	53256556	53256667	53256585	53256585	Frame_Shift_Del	A	-	p.Q605fs
LIHC	TCGA-DD-A3A0-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000398510.3	chr16	53301838:53302038:53307537:53307697:53308124:53308214,	53307538	53307697	53307610	53307610	Frame_Shift_Del	A	-	p.Q1597fs
LIHC	TCGA-DD-A3A0-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53514478:53514681:53515582:53515747:53524041:53524213,	53515583	53515747	53515682	53515682	Frame_Shift_Del	A	-	p.K1062fs
LIHC	TCGA-DD-A3A0-01	AKTIP	ENST00000563928.1,ENST00000568022.1,ENST00000561799.1,ENST00000565408.1,ENST00000568596.1,ENST00000566045.1,ENST00000563108.1,ENST00000300245.4,ENST00000570004.1,ENST00000394657.7	chr16	53529173:53529238:53532302:53532508:53534129:53534241,	53532303	53532508	53532414	53532414	Frame_Shift_Del	T	-	p.N46fs
LIHC	TCGA-DD-A3A0-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53675196:53675387:53679536:53679915:53682875:53683027,	53679537	53679915	53679760	53679760	Frame_Shift_Del	A	-	p.F820fs
LIHC	TCGA-DD-A3A0-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53692325:53692376:53692683:53692790:53698781:53698921,	53692684	53692790	53692696	53692696	Frame_Shift_Del	T	-	p.K446fs
LIHC	TCGA-DD-A3A0-01	FTO	ENST00000471389.1	chr16	53844051:53844129:53859775:53860403:53878066:53878210,	53859776	53860403	53859992	53859992	Frame_Shift_Del	T	-	p.F114fs
LIHC	TCGA-DD-A3A0-01	FTO	ENST00000394647.3,ENST00000464071.1,ENST00000471389.1	chr16	53907697:53907777:53913755:53913899:53922743:53922863,	53913756	53913899	53913873	53913873	Frame_Shift_Del	A	-	p.K365fs
LIHC	TCGA-DD-A3A0-01	IRX6	ENST00000290552.7	chr16	55361207:55361317:55361497:55361805:55362611:55363223,	55361498	55361805	55361739	55361739	Frame_Shift_Del	G	-	p.G219fs
LIHC	TCGA-DD-A3A0-01	LPCAT2	ENST00000564084.1,ENST00000262134.5	chr16	55563746:55563859:55565825:55565886:55566735:55566794,	55565826	55565886	55565837	55565837	Frame_Shift_Del	C	-	p.F218fs
LIHC	TCGA-DD-A3A0-01	SLC6A2	ENST00000568529.2,ENST00000566163.1	chr16	55705849:55706087:55719054:55719193:55727921:55728025,	55719055	55719193	55719107	55719107	Frame_Shift_Del	C	-	p.P233fs
LIHC	TCGA-DD-A3A0-01	MT1F	ENST00000568475.1	chr16	56691923:56691998:56692586:56692694:56692984:56693214,	56692587	56692694	56692607	56692607	Frame_Shift_Del	G	-	p.G17fs
LIHC	TCGA-DD-A3A0-01	MT1F	ENST00000394501.2	chr16	56691923:56691998:56692583:56692652:56692984:56693214,	56692584	56692652	56692607	56692607	Frame_Shift_Del	G	-	p.G17fs
LIHC	TCGA-DD-A3A0-01	MT1X	ENST00000564974.1	chr16	56716392:56716480:56717076:56717298:56717869:56718108,	56717077	56717298	56717097	56717097	Frame_Shift_Del	G	-	p.G17fs
LIHC	TCGA-DD-A3A0-01	HERPUD1	ENST00000344114.4,ENST00000300302.5	chr16	56969153:56969224:56969315:56969387:56970598:56970729,	56969316	56969387	56969329	56969329	Frame_Shift_Del	T	-	p.V81fs
LIHC	TCGA-DD-A3A0-01	HERPUD1	ENST00000570273.1,ENST00000439977.2,ENST00000565966.1,ENST00000569569.1,ENST00000563343.1	chr16	56969153:56969224:56969312:56969387:56970598:56970729,	56969313	56969387	56969329	56969329	Frame_Shift_Del	T	-	p.V81fs
LIHC	TCGA-DD-A3A0-01	HERPUD1	ENST00000563781.1,ENST00000300302.5,ENST00000564678.1,ENST00000379792.2,ENST00000439977.2	chr16	56970635:56970729:56973806:56974157:56976043:56976114,56973160:56973271:56973806:56974157:56976043:56976114,	56973807	56974157	56974148	56974148	Frame_Shift_Del	T	-	p.V299fs
LIHC	TCGA-DD-A3A0-01	HERPUD1	ENST00000568651.1	chr16	56973160:56973271:56974088:56974157:56976043:56976114,	56974089	56974157	56974148	56974148	Frame_Shift_Del	T	-	p.V299fs
LIHC	TCGA-DD-A3A0-01	FAM192A	ENST00000562324.1	chr16	57206720:57206786:57207639:57207781:57219942:57219976,	57207640	57207781	57207729	57207729	Frame_Shift_Del	T	-	p.K13fs
LIHC	TCGA-DD-A3A0-01	CX3CL1	ENST00000563383.1	chr16	57406436:57406550:57413527:57413666:57415941:57416390,	57413528	57413666	57413653	57413653	Frame_Shift_Del	A	-	p.K22fs
LIHC	TCGA-DD-A3A0-01	COQ9	ENST00000564115.1	chr16	57486712:57486848:57490415:57490558:57492157:57492228,	57490416	57490558	57490461	57490461	Frame_Shift_Del	G	-	p.G142fs
LIHC	TCGA-DD-A3A0-01	COQ9	ENST00000567072.1	chr16	57486712:57486848:57490415:57490538:57492157:57492228,	57490416	57490538	57490461	57490461	Frame_Shift_Del	G	-	p.G142fs
LIHC	TCGA-DD-A3A0-01	COQ9	ENST00000564115.1	chr16	57486712:57486848:57490415:57490558:57492157:57492228,	57490416	57490558	57490481	57490481	Frame_Shift_Del	T	-	p.H148fs
LIHC	TCGA-DD-A3A0-01	COQ9	ENST00000567072.1	chr16	57486712:57486848:57490415:57490538:57492157:57492228,	57490416	57490538	57490481	57490481	Frame_Shift_Del	T	-	p.H148fs
LIHC	TCGA-DD-A3A0-01	DOK4	ENST00000561918.1,ENST00000569010.1,ENST00000340099.4,ENST00000569548.1,ENST00000566936.1	chr16	57508801:57508894:57509011:57509131:57509417:57509532,	57509012	57509131	57509056	57509056	Frame_Shift_Del	C	-	p.G122fs
LIHC	TCGA-DD-A3A0-01	KATNB1	ENST00000566611.1,ENST00000379661.3,ENST00000566726.1,ENST00000562592.1,ENST00000563127.1	chr16	57778305:57778423:57784738:57784839:57785172:57785214,	57784739	57784839	57784820	57784820	Frame_Shift_Del	C	-	p.S124fs
LIHC	TCGA-DD-A3A0-01	KIFC3	ENST00000465878.2,ENST00000543930.1,ENST00000539578.1,ENST00000421376.2,ENST00000541240.1,ENST00000379655.4,ENST00000562903.1,ENST00000565270.1,ENST00000540079.2,ENST00000445690.2	chr16	57794953:57795083:57795324:57795448:57796051:57796182,	57795325	57795448	57795418	57795418	Frame_Shift_Del	T	-	p.K593fs
LIHC	TCGA-DD-A3A0-01	KIFC3	ENST00000564136.1	chr16	57794953:57795083:57795226:57795448:57796051:57796182,	57795227	57795448	57795418	57795418	Frame_Shift_Del	T	-	p.K593fs
LIHC	TCGA-DD-A3A0-01	KIFC3	ENST00000566648.1,ENST00000541240.1,ENST00000565684.1,ENST00000379655.4,ENST00000445690.2	chr16	57806134:57806200:57828910:57829053:57831983:57832012,	57828911	57829053	57829043	57829043	Frame_Shift_Del	T	-	p.K61fs
LIHC	TCGA-DD-A3A0-01	CNGB1	ENST00000564448.1,ENST00000251102.8	chr16	57918271:57918361:57921758:57921978:57931300:57931447,	57921759	57921978	57921851	57921851	Frame_Shift_Del	C	-	p.A1118fs
LIHC	TCGA-DD-A3A0-01	USB1	ENST00000561743.1,ENST00000564387.1,ENST00000561568.1,ENST00000219281.3,ENST00000562534.1	chr16	58043832:58044016:58048176:58048230:58051237:58051284,	58048177	58048230	58048206	58048206	Frame_Shift_Del	T	-	p.I160fs
LIHC	TCGA-DD-A3A0-01	CNOT1	ENST00000563130.1,ENST00000567188.1,ENST00000569924.1,ENST00000245138.4,ENST00000317147.5,ENST00000569240.1	chr16	58554918:58554940:58555086:58555221:58557273:58557406,	58555087	58555221	58555162	58555162	Frame_Shift_Del	A	-	p.F2326fs
LIHC	TCGA-DD-A3A0-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58590765:58590897:58592376:58592578:58594115:58594266,	58592377	58592578	58592453	58592453	Frame_Shift_Del	T	-	p.K752fs
LIHC	TCGA-DD-A3A0-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000317147.5,ENST00000569240.1	chr16	58590765:58590897:58592376:58592578:58594115:58594266,	58592377	58592578	58592469	58592469	Frame_Shift_Del	G	-	p.P747fs
LIHC	TCGA-DD-A3A0-01	GOT2	ENST00000434819.2,ENST00000245206.5	chr16	58743320:58743471:58749917:58750083:58750566:58750717,	58749918	58750083	58749930	58749930	Frame_Shift_Del	A	-	p.L336fs
LIHC	TCGA-DD-A3A0-01	GOT2	ENST00000564400.1,ENST00000245206.5,ENST00000496461.1	chr16	58753099:58753159:58756053:58756182:58757649:58757806,	58756054	58756182	58756067	58756067	Frame_Shift_Del	A	-	p.L121fs
LIHC	TCGA-DD-A3A0-01	CDH5	ENST00000341529.3,ENST00000565334.1	chr16	66426038:66426286:66429961:66430104:66431884:66432009,	66429962	66430104	66430010	66430010	Frame_Shift_Del	A	-	p.T422fs
LIHC	TCGA-DD-A3A0-01	CMTM4	ENST00000330687.4,ENST00000561680.1	chr16	66651133:66651261:66655964:66656125:66657306:66657405,	66655965	66656125	66656066	66656066	Frame_Shift_Del	T	-	p.K174fs
LIHC	TCGA-DD-A3A0-01	DYNC1LI2	ENST00000440564.2	chr16	66770099:66770147:66776340:66776571:66783099:66783216,66770099:66770147:66776340:66776571:66785175:66785206,	66776341	66776571	66776383	66776383	Frame_Shift_Del	T	-	p.M163fs
LIHC	TCGA-DD-A3A0-01	DYNC1LI2	ENST00000566150.1	chr16	66770099:66770147:66776340:66776457:66783099:66783216,	66776341	66776457	66776383	66776383	Frame_Shift_Del	T	-	p.M163fs
LIHC	TCGA-DD-A3A0-01	CDH16	ENST00000394055.3	chr16	66943888:66943996:66944162:66944339:66945084:66945218,	66944163	66944339	66944236	66944236	Frame_Shift_Del	C	-	p.G698fs
LIHC	TCGA-DD-A3A0-01	CDH16	ENST00000565796.1	chr16	66943888:66943996:66944162:66944288:66945084:66945218,	66944163	66944288	66944236	66944236	Frame_Shift_Del	C	-	p.G698fs
LIHC	TCGA-DD-A3A0-01	CDH16	ENST00000568698.1,ENST00000570262.1,ENST00000568632.1,ENST00000299752.4	chr16	66943888:66943996:66944162:66944405:66945084:66945218,	66944163	66944405	66944236	66944236	Frame_Shift_Del	C	-	p.G698fs
LIHC	TCGA-DD-A3A0-01	CDH16	ENST00000567269.1	chr16	66949122:66949304:66949967:66950106:66950176:66950299,	66949968	66950106	66950053	66950053	Frame_Shift_Del	A	-	p.L113fs
LIHC	TCGA-DD-A3A0-01	CES2	ENST00000568470.1	chr16	66969466:66969614:66971939:66972144:66973119:66973261,66968373:66969879:66971939:66972144:66973119:66973261,	66971940	66972144	66972086	66972086	Frame_Shift_Del	C	-	p.P140fs
LIHC	TCGA-DD-A3A0-01	CES2	ENST00000564420.1,ENST00000317091.4,ENST00000417689.1,ENST00000568470.1	chr16	66975670:66975751:66976007:66976152:66976550:66976626,	66976008	66976152	66976145	66976145	Frame_Shift_Del	T	-	p.H489fs
LIHC	TCGA-DD-A3A0-01	CES3	ENST00000570236.1,ENST00000394037.1,ENST00000303334.4,ENST00000566453.1	chr16	66997393:66997532:66997704:66997838:66998259:66998413,	66997705	66997838	66997815	66997815	Frame_Shift_Del	C	-	p.R179fs
LIHC	TCGA-DD-A3A0-01	CES3	ENST00000394037.1,ENST00000303334.4	chr16	67000627:67000768:67003581:67003662:67005074:67005222,	67003582	67003662	67003645	67003645	Frame_Shift_Del	C	-	p.P376fs
LIHC	TCGA-DD-A3A0-01	CES4A	ENST00000540947.2,ENST00000543561.1,ENST00000541479.1,ENST00000326686.5,ENST00000338718.4,ENST00000398354.1,ENST00000540579.1,ENST00000538199.1	chr16	67034540:67034682:67034759:67034893:67035210:67035364,	67034760	67034893	67034795	67034795	Frame_Shift_Del	G	-	p.V146fs
LIHC	TCGA-DD-A3A0-01	CES4A	ENST00000535543.1	chr16	67034540:67034682:67034759:67034949:67035210:67035364,	67034760	67034949	67034795	67034795	Frame_Shift_Del	G	-	p.V146fs
LIHC	TCGA-DD-A3A0-01	CES4A	ENST00000535696.1	chr16	67034540:67034682:67034759:67034905:67035210:67035364,	67034760	67034905	67034795	67034795	Frame_Shift_Del	G	-	p.V146fs
LIHC	TCGA-DD-A3A0-01	HSF4	ENST00000522295.1,ENST00000584272.1,ENST00000522870.1,ENST00000523562.1,ENST00000517750.1,ENST00000520528.1,ENST00000421453.1,ENST00000520833.1,ENST00000434833.2	chr16	67201415:67201502:67201726:67201850:67202733:67202786,	67201727	67201850	67201727	67201727	Frame_Shift_Del	C	-	p.A320fs
LIHC	TCGA-DD-A3A0-01	HSF4	ENST00000521314.1,ENST00000264009.8,ENST00000521374.1	chr16	67201415:67201502:67201622:67201850:67202733:67202786,	67201623	67201850	67201727	67201727	Frame_Shift_Del	C	-	p.A320fs
LIHC	TCGA-DD-A3A0-01	TMEM208	ENST00000562235.1	chr16	67262257:67262317:67262397:67262560:67262699:67262739,	67262398	67262560	67262482	67262482	Frame_Shift_Del	G	-	p.G13fs
LIHC	TCGA-DD-A3A0-01	TMEM208	ENST00000565201.1,ENST00000563953.1,ENST00000304800.9	chr16	67262257:67262317:67262397:67262534:67262699:67262739,	67262398	67262534	67262482	67262482	Frame_Shift_Del	G	-	p.G13fs
LIHC	TCGA-DD-A3A0-01	PLEKHG4	ENST00000563969.1,ENST00000450733.1,ENST00000379344.3,ENST00000427155.2,ENST00000360461.5	chr16	67316644:67316761:67318177:67318360:67318615:67319118,	67318178	67318360	67318305	67318305	Frame_Shift_Del	C	-	p.A546fs
LIHC	TCGA-DD-A3A0-01	KCTD19	ENST00000304372.5,ENST00000570049.1,ENST00000566392.1	chr16	67328875:67328959:67329165:67329308:67330061:67330162,	67329166	67329308	67329236	67329236	Frame_Shift_Del	C	-	p.D441fs
LIHC	TCGA-DD-A3A0-01	HSD11B2	ENST00000326152.5	chr16	67465268:67465416:67469530:67469743:67469859:67470037,	67469531	67469743	67469651	67469651	Frame_Shift_Del	C	-	p.S129fs
LIHC	TCGA-DD-A3A0-01	HSD11B2	ENST00000566606.1	chr16	67465268:67465416:67469435:67469743:67469859:67470037,	67469436	67469743	67469651	67469651	Frame_Shift_Del	C	-	p.S129fs
LIHC	TCGA-DD-A3A0-01	HSD11B2	ENST00000326152.5	chr16	67469859:67470045:67470151:67470289:67470490:67470894,	67470152	67470289	67470245	67470245	Frame_Shift_Del	G	-	p.W253fs
LIHC	TCGA-DD-A3A0-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645357	67645357	Frame_Shift_Del	A	-	p.K209fs
LIHC	TCGA-DD-A3A0-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67645992	67645992	Frame_Shift_Del	C	-	p.T307fs
LIHC	TCGA-DD-A3A0-01	ACD	ENST00000602860.1,ENST00000393919.4,ENST00000219251.8	chr16	67691664:67691756:67691888:67692265:67692457:67692544,	67691889	67692265	67692111	67692111	Frame_Shift_Del	G	-	p.P411fs
LIHC	TCGA-DD-A3A0-01	PARD6A	ENST00000458121.2	chr16	67694861:67695004:67695357:67695580:67695798:67696633,	67695358	67695580	67695502	67695502	Frame_Shift_Del	C	-	p.P70fs
LIHC	TCGA-DD-A3A0-01	RANBP10	ENST00000536251.1,ENST00000602506.1,ENST00000411657.2,ENST00000602677.1,ENST00000448631.2,ENST00000317506.3	chr16	67763182:67763387:67763582:67763731:67763840:67763949,	67763583	67763731	67763632	67763632	Frame_Shift_Del	G	-	p.P366fs
LIHC	TCGA-DD-A3A0-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67985725:67985940:67986086:67986328:67988545:67988676,	67986087	67986328	67986298	67986298	Frame_Shift_Del	A	-	p.Y238fs
LIHC	TCGA-DD-A3A0-01	DPEP2	ENST00000268795.5	chr16	68026075:68026096:68026852:68027160:68034350:68034467,	68026853	68027160	68026996	68026996	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-DD-A3A0-01	NFATC3	ENST00000379165.4,ENST00000575270.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4	chr16	68119560:68119687:68155889:68157024:68160350:68160513,	68155890	68157024	68156204	68156204	Frame_Shift_Del	T	-	p.F140fs
LIHC	TCGA-DD-A3A0-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68119560:68119687:68160350:68160513:68191771:68191971,68156932:68157024:68160350:68160513:68191771:68191971,	68160351	68160513	68160493	68160493	Frame_Shift_Del	G	-	p.G462fs
LIHC	TCGA-DD-A3A0-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000539828.2,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68208276:68208417:68215377:68215433:68217142:68217269,	68215378	68215433	68215420	68215420	Frame_Shift_Del	A	-	p.E653fs
LIHC	TCGA-DD-A3A0-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000539828.2,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68215377:68215433:68217142:68217269:68224670:68225678,	68217143	68217269	68217175	68217175	Frame_Shift_Del	T	-	p.H668fs
LIHC	TCGA-DD-A3A0-01	NFATC3	ENST00000349223.5	chr16	68224670:68225678:68255098:68255187:68260252:68260374,	68255099	68255187	68255125	68255125	Frame_Shift_Del	T	-	p.1045fs
LIHC	TCGA-DD-A3A0-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68265198:68265279:68265384:68265597:68265704:68266006,	68265385	68265597	68265418	68265418	Frame_Shift_Del	C	-	p.R493fs
LIHC	TCGA-DD-A3A0-01	PLA2G15	ENST00000219345.5,ENST00000562449.2	chr16	68288821:68288940:68289184:68289283:68289793:68289893,68288845:68288940:68289184:68289283:68289668:68289756,	68289185	68289283	68289278	68289278	Frame_Shift_Del	C	-	p.A166fs
LIHC	TCGA-DD-A3A0-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289731	68289731	Frame_Shift_Del	G	-	p.G190fs
LIHC	TCGA-DD-A3A0-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289731	68289731	Frame_Shift_Del	G	-	p.G190fs
LIHC	TCGA-DD-A3A0-01	SLC7A6	ENST00000219343.6,ENST00000379152.3	chr16	68300504:68300624:68308593:68309152:68321648:68321774,	68308594	68309152	68309110	68309110	Frame_Shift_Del	C	-	p.P162fs
LIHC	TCGA-DD-A3A0-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844211	68844211	Frame_Shift_Del	T	-	p.F267fs
LIHC	TCGA-DD-A3A0-01	SNTB2	ENST00000528525.1	chr16	69279504:69279718:69294073:69294163:69304045:69304084,	69294074	69294163	69294128	69294128	Frame_Shift_Del	A	-	p.K324fs
LIHC	TCGA-DD-A3A0-01	SNTB2	ENST00000336278.4	chr16	69279504:69279718:69293952:69294163:69304045:69304084,	69293953	69294163	69294128	69294128	Frame_Shift_Del	A	-	p.K324fs
LIHC	TCGA-DD-A3A0-01	NIP7	ENST00000569637.2,ENST00000254941.6	chr16	69373732:69373788:69373908:69373995:69374096:69374235,	69373909	69373995	69373960	69373960	Frame_Shift_Del	T	-	p.C36fs
LIHC	TCGA-DD-A3A0-01	NQO1	ENST00000561500.1	chr16	69740898:69741110:69744977:69745184:69746930:69747032,	69744978	69745184	69745055	69745055	Frame_Shift_Del	C	-	p.D217fs
LIHC	TCGA-DD-A3A0-01	WWP2	ENST00000359154.2,ENST00000544162.1,ENST00000567986.1,ENST00000448661.1,ENST00000356003.2,ENST00000569174.1	chr16	69833076:69833198:69874028:69874166:69875926:69876023,	69874029	69874166	69874135	69874135	Frame_Shift_Del	A	-	p.G149fs
LIHC	TCGA-DD-A3A0-01	AARS	ENST00000261772.8,ENST00000565361.2	chr16	70289637:70289739:70292882:70293089:70294946:70295060,70291935:70292120:70292882:70293089:70294946:70295060,	70292883	70293089	70293086	70293086	Frame_Shift_Del	G	-	p.R599fs
LIHC	TCGA-DD-A3A0-01	FUK	ENST00000464499.1	chr16	70512453:70512553:70512699:70513306:70513481:70513584,	70512700	70513306	70513191	70513191	Frame_Shift_Del	C	-	p.A1013fs
LIHC	TCGA-DD-A3A0-01	FUK	ENST00000378912.2,ENST00000571514.1,ENST00000288078.6,ENST00000498702.1	chr16	70512453:70512553:70513082:70513306:70513481:70513584,	70513083	70513306	70513191	70513191	Frame_Shift_Del	C	-	p.A1013fs
LIHC	TCGA-DD-A3A0-01	COG4	ENST00000323786.5,ENST00000482252.1,ENST00000564415.1,ENST00000530314.1	chr16	70524232:70524295:70530168:70530334:70531123:70531290,	70530169	70530334	70530305	70530305	Frame_Shift_Del	C	-	p.G504fs
LIHC	TCGA-DD-A3A0-01	SF3B3	ENST00000302516.5,ENST00000563739.1	chr16	70598967:70599173:70599270:70599427:70601313:70601439,	70599271	70599427	70599285	70599285	Frame_Shift_Del	G	-	p.R895fs
LIHC	TCGA-DD-A3A0-01	SF3B3	ENST00000302516.5,ENST00000563739.1	chr16	70598967:70599173:70599270:70599427:70601313:70601439,	70599271	70599427	70599349	70599349	Frame_Shift_Del	C	-	p.N916fs
LIHC	TCGA-DD-A3A0-01	SF3B3	ENST00000302516.5	chr16	70599270:70599427:70601313:70601439:70602185:70602398,	70601314	70601439	70601376	70601376	Frame_Shift_Del	G	-	p.V963fs
LIHC	TCGA-DD-A3A0-01	SF3B3	ENST00000302516.5	chr16	70601313:70601439:70602185:70602398:70602945:70603044,	70602186	70602398	70602320	70602320	Frame_Shift_Del	C	-	p.Y1029fs
LIHC	TCGA-DD-A3A0-01	MTSS1L	ENST00000338779.6	chr16	70699368:70699443:70708208:70708431:70710783:70710881,	70708209	70708431	70708425	70708425	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-DD-A3A0-01	MTSS1L	ENST00000338779.6,ENST00000562883.2,ENST00000576338.1	chr16	70710851:70710881:70711694:70711802:70712154:70712242,	70711695	70711802	70711721	70711721	Frame_Shift_Del	G	-	p.H236fs
LIHC	TCGA-DD-A3A0-01	VAC14	ENST00000261776.5,ENST00000568548.1,ENST00000563662.1,ENST00000568886.1	chr16	70765397:70765530:70778325:70778482:70796442:70796508,	70778326	70778482	70778435	70778435	Frame_Shift_Del	G	-	p.P473fs
LIHC	TCGA-DD-A3A0-01	CALB2	ENST00000302628.4,ENST00000349553.5,ENST00000562305.1	chr16	71406080:71406132:71408647:71408737:71411569:71411650,	71408648	71408737	71408673	71408673	Frame_Shift_Del	A	-	p.E66fs
LIHC	TCGA-DD-A3A0-01	PHLPP2	ENST00000567016.1,ENST00000568954.1,ENST00000356272.3,ENST00000360429.3,ENST00000568004.1	chr16	71692555:71692718:71697801:71698002:71701080:71701236,	71697802	71698002	71697931	71697931	Frame_Shift_Del	A	-	p.L619fs
LIHC	TCGA-DD-A3A0-01	PHLPP2	ENST00000567016.1,ENST00000538126.1	chr16	71736500:71736634:71748414:71748704:71757671:71757715,	71748415	71748704	71748651	71748651	Frame_Shift_Del	A	-	p.F16fs
LIHC	TCGA-DD-A3A0-01	AP1G1	ENST00000423132.2,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000299980.4,ENST00000565642.1,ENST00000393512.3,ENST00000566179.1	chr16	71787735:71787790:71789921:71790062:71792710:71792824,	71789922	71790062	71789966	71789966	Frame_Shift_Del	T	-	p.E395fs
LIHC	TCGA-DD-A3A0-01	DHODH	ENST00000572887.1,ENST00000219240.4	chr16	72050922:72051005:72055022:72055210:72056260:72056374,	72055023	72055210	72055031	72055031	Frame_Shift_Del	C	-	p.P176fs
LIHC	TCGA-DD-A3A0-01	DHX38	ENST00000268482.3,ENST00000569935.1	chr16	72136999:72137110:72137500:72137687:72137844:72138030,	72137501	72137687	72137522	72137522	Frame_Shift_Del	G	-	p.V554fs
LIHC	TCGA-DD-A3A0-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827256	72827256	Frame_Shift_Del	G	-	p.L3109fs
LIHC	TCGA-DD-A3A0-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828884	72828884	Frame_Shift_Del	A	-	p.L2566fs
LIHC	TCGA-DD-A3A0-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830585	72830585	Frame_Shift_Del	T	-	p.K1999fs
LIHC	TCGA-DD-A3A0-01	PSMD7	ENST00000568717.1,ENST00000540379.1,ENST00000219313.4	chr16	74336109:74336190:74338200:74338292:74339186:74339504,	74338201	74338292	74338238	74338238	Frame_Shift_Del	C	-	p.T159fs
LIHC	TCGA-DD-A3A0-01	PSMD7	ENST00000568717.1,ENST00000540379.1,ENST00000219313.4	chr16	74336109:74336190:74338200:74338292:74339186:74339504,	74338201	74338292	74338244	74338244	Frame_Shift_Del	A	-	p.E161fs
LIHC	TCGA-DD-A3A0-01	CLEC18B	ENST00000339953.5	chr16	74444433:74444530:74444802:74444932:74445566:74445673,	74444803	74444932	74444920	74444920	Frame_Shift_Del	C	-	p.V333fs
LIHC	TCGA-DD-A3A0-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000447066.2	chr16	74491771:74491892:74493579:74493687:74495991:74496093,	74493580	74493687	74493597	74493597	Frame_Shift_Del	T	-	p.T1043fs
LIHC	TCGA-DD-A3A0-01	RFWD3	ENST00000571750.1	chr16	74685817:74686020:74694829:74695349:74698521:74698643,	74694830	74695349	74695143	74695143	Frame_Shift_Del	G	-	p.L70fs
LIHC	TCGA-DD-A3A0-01	MLKL	ENST00000571303.1,ENST00000308807.7	chr16	74712796:74712878:74716548:74716684:74719383:74719481,	74716549	74716684	74716568	74716568	Frame_Shift_Del	C	-	p.A314fs
LIHC	TCGA-DD-A3A0-01	WDR59	ENST00000570070.1,ENST00000262144.6	chr16	74927604:74927710:74937844:74937998:74942805:74942875,	74937845	74937998	74937899	74937899	Frame_Shift_Del	G	-	p.P604fs
LIHC	TCGA-DD-A3A0-01	WDR59	ENST00000569229.1,ENST00000562371.1,ENST00000262144.6	chr16	74943422:74943555:74943719:74943815:74946095:74946133,	74943720	74943815	74943723	74943723	Frame_Shift_Del	A	-	p.F494fs
LIHC	TCGA-DD-A3A0-01	LDHD	ENST00000569876.1,ENST00000300051.4,ENST00000450168.2	chr16	75148724:75148866:75149095:75149237:75149445:75149490,	75149096	75149237	75149123	75149123	Frame_Shift_Del	C	-	p.G100fs
LIHC	TCGA-DD-A3A0-01	KARS	ENST00000566560.1,ENST00000568682.1,ENST00000319410.5,ENST00000302445.3,ENST00000570215.1	chr16	75670351:75670445:75674081:75674247:75675461:75675500,	75674082	75674247	75674201	75674201	Frame_Shift_Del	T	-	p.N118fs
LIHC	TCGA-DD-A3A0-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000478060.1,ENST00000469667.1	chr16	76555935:76556154:76569441:76569681:76572012:76572237,	76569442	76569681	76569562	76569562	Frame_Shift_Del	G	-	p.R958fs
LIHC	TCGA-DD-A3A0-01	WWOX	ENST00000408984.3,ENST00000563358.1,ENST00000566780.1,ENST00000355860.3,ENST00000406884.2,ENST00000569332.1,ENST00000561846.1	chr16	78143674:78143732:78148872:78149051:78198079:78198186,	78148873	78149051	78148903	78148903	Frame_Shift_Del	C	-	p.D87fs
LIHC	TCGA-DD-A3A0-01	CENPN	ENST00000564669.1,ENST00000299572.5,ENST00000393335.3,ENST00000305850.5,ENST00000428963.2	chr16	81047740:81047786:81051362:81051439:81053704:81053751,81050930:81050990:81051362:81051439:81053704:81053751,	81051363	81051439	81051398	81051398	Frame_Shift_Del	A	-	p.K105fs
LIHC	TCGA-DD-A3A0-01	CENPN	ENST00000564669.1,ENST00000299572.5,ENST00000393335.3,ENST00000305850.5,ENST00000428963.2	chr16	81047740:81047786:81051362:81051439:81053704:81053751,81050930:81050990:81051362:81051439:81053704:81053751,	81051363	81051439	81051433	81051433	Frame_Shift_Del	A	-	p.L116fs
LIHC	TCGA-DD-A3A0-01	CMIP	ENST00000537098.3,ENST00000539778.2,ENST00000566462.1,ENST00000398040.4,ENST00000566513.1	chr16	81691379:81691421:81694488:81694551:81697873:81697933,	81694489	81694551	81694508	81694508	Frame_Shift_Del	A	-	p.E234fs
LIHC	TCGA-DD-A3A0-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81934216:81934385:81939007:81939112:81941289:81941379,	81939008	81939112	81939022	81939022	Frame_Shift_Del	C	-	p.G459fs
LIHC	TCGA-DD-A3A0-01	PLCG2	ENST00000567980.1,ENST00000359376.3	chr16	81942020:81942196:81944124:81944325:81946201:81946321,	81944125	81944325	81944178	81944178	Frame_Shift_Del	C	-	p.T596fs
LIHC	TCGA-DD-A3A0-01	CDH13	ENST00000565636.1,ENST00000268613.10,ENST00000566620.1,ENST00000446376.2,ENST00000431540.3	chr16	82891966:82892078:83065614:83065823:83158989:83159106,	83065615	83065823	83065637	83065637	Frame_Shift_Del	A	-	p.G60fs
LIHC	TCGA-DD-A3A0-01	MBTPS1	ENST00000343411.3	chr16	84129206:84129410:84132657:84132915:84135225:84135712,	84132658	84132915	84132758	84132758	Frame_Shift_Del	T	-	p.K107fs
LIHC	TCGA-DD-A3A0-01	ATP2C2	ENST00000416219.2,ENST00000420010.2,ENST00000262429.4,ENST00000565631.1	chr16	84482138:84482295:84485526:84485697:84486743:84486841,	84485527	84485697	84485594	84485594	Frame_Shift_Del	C	-	p.D576fs
LIHC	TCGA-DD-A3A0-01	COTL1	ENST00000262428.4	chr16	84600155:84600561:84623710:84623868:84651106:84651165,	84623711	84623868	84623827	84623827	Frame_Shift_Del	C	-	p.D68fs
LIHC	TCGA-DD-A3A0-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778544	84778544	Frame_Shift_Del	A	-	p.K154fs
LIHC	TCGA-DD-A3A0-01	GSE1	ENST00000393243.1,ENST00000253458.7,ENST00000405402.2,ENST00000412692.1	chr16	85690882:85691210:85694751:85695371:85696586:85696699,	85694752	85695371	85695019	85695019	Frame_Shift_Del	G	-	p.E636fs
LIHC	TCGA-DD-A3A0-01	MTHFSD	ENST00000562994.1,ENST00000568798.1,ENST00000546093.1	chr16	86575722:86575819:86580164:86580255:86582069:86582183,86575722:86575819:86580164:86580255:86581640:86581717,	86580165	86580255	86580210	86580210	Frame_Shift_Del	G	-	p.L132fs
LIHC	TCGA-DD-A3A0-01	JPH3	ENST00000537256.1,ENST00000284262.2,ENST00000563609.1	chr16	87717747:87717872:87723251:87724132:87730185:87730408,	87723252	87724132	87723320	87723320	Frame_Shift_Del	C	-	p.P452fs
LIHC	TCGA-DD-A3A0-01	KLHDC4	ENST00000347925.5	chr16	87748103:87748179:87760370:87760530:87782278:87782415,	87760371	87760530	87760446	87760446	Frame_Shift_Del	G	-	p.P228fs
LIHC	TCGA-DD-A3A0-01	KLHDC4	ENST00000568502.1,ENST00000565328.1,ENST00000562155.1	chr16	87764241:87764250:87788799:87788898:87795554:87795622,87782404:87782415:87788799:87788898:87795554:87795622,	87788800	87788898	87788891	87788891	Frame_Shift_Del	A	-	p.L93fs
LIHC	TCGA-DD-A3A0-01	KLHDC4	ENST00000566661.1	chr16	87782404:87782415:87788799:87790083:87795554:87795622,	87788800	87790083	87788891	87788891	Frame_Shift_Del	A	-	p.L93fs
LIHC	TCGA-DD-A3A0-01	BANP	ENST00000497491.1,ENST00000393207.1,ENST00000393208.2,ENST00000479780.2,ENST00000355163.5,ENST00000538234.1,ENST00000355022.4,ENST00000286122.7	chr16	88052033:88052273:88061088:88061256:88066714:88066825,	88061089	88061256	88061229	88061229	Frame_Shift_Del	C	-	p.P338fs
LIHC	TCGA-DD-A3A0-01	RNF166	ENST00000562544.1	chr16	88766027:88766140:88767669:88767826:88772578:88772670,	88767670	88767826	88767748	88767748	Frame_Shift_Del	G	-	p.P78fs
LIHC	TCGA-DD-A3A0-01	PIEZO1	ENST00000301015.9	chr16	88786792:88786940:88787023:88787156:88787573:88787838,	88787024	88787156	88787142	88787142	Frame_Shift_Del	C	-	p.E1898fs
LIHC	TCGA-DD-A3A0-01	GALNS	ENST00000542788.1,ENST00000562593.1,ENST00000268695.5,ENST00000567525.1,ENST00000568613.1	chr16	88891196:88891277:88893109:88893246:88898405:88898509,	88893110	88893246	88893125	88893125	Frame_Shift_Del	C	-	p.G375fs
LIHC	TCGA-DD-A3A0-01	CDH15	ENST00000289746.2	chr16	89253836:89253965:89254507:89254693:89256650:89256904,	89254508	89254693	89254587	89254587	Frame_Shift_Del	C	-	p.S291fs
LIHC	TCGA-DD-A3A0-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347018	89347018	Frame_Shift_Del	C	-	p.D1978fs
LIHC	TCGA-DD-A3A0-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89348501	89348501	Frame_Shift_Del	C	-	p.G1483fs
LIHC	TCGA-DD-A3A0-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349878	89349878	Frame_Shift_Del	T	-	p.K1024fs
LIHC	TCGA-DD-A3A0-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350862	89350862	Frame_Shift_Del	T	-	p.K696fs
LIHC	TCGA-DD-A3A0-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351002	89351002	Frame_Shift_Del	G	-	p.Q650fs
LIHC	TCGA-DD-A3A0-01	FANCA	ENST00000563673.1,ENST00000389302.3,ENST00000543736.1,ENST00000534992.1,ENST00000389301.3,ENST00000567621.1,ENST00000566889.1,ENST00000568369.1	chr16	89866012:89866046:89869666:89869749:89871687:89871800,	89869667	89869749	89869675	89869675	Frame_Shift_Del	T	-	p.M262fs
LIHC	TCGA-DD-A3A0-01	FANCA	ENST00000563673.1,ENST00000389302.3,ENST00000543736.1,ENST00000534992.1,ENST00000389301.3,ENST00000567621.1,ENST00000566889.1,ENST00000568369.1	chr16	89866012:89866046:89869666:89869749:89871687:89871800,	89869667	89869749	89869710	89869710	Frame_Shift_Del	T	-	p.N250fs
LIHC	TCGA-DD-A3A0-01	TCF25	ENST00000568412.1	chr16	89954059:89954089:89960196:89960266:89961490:89961545,	89960197	89960266	89960225	89960225	Frame_Shift_Del	T	-	p.F263fs
LIHC	TCGA-DD-A3A0-01	TCF25	ENST00000568409.1	chr16	89958600:89958683:89960135:89960266:89961445:89961545,89958600:89958683:89960135:89960266:89961490:89961545,	89960136	89960266	89960225	89960225	Frame_Shift_Del	T	-	p.F263fs
LIHC	TCGA-DD-A3A0-01	DEF8	ENST00000268676.7	chr16	90015210:90015222:90015824:90016046:90020650:90020784,	90015825	90016046	90015949	90015949	Frame_Shift_Del	C	-	p.P26fs
LIHC	TCGA-DD-A3A0-01	DEF8	ENST00000268676.7	chr16	90015210:90015222:90015824:90016046:90020650:90020784,	90015825	90016046	90015979	90015979	Frame_Shift_Del	G	-	p.G36fs
LIHC	TCGA-DD-A3A0-01	DEF8	ENST00000561741.1	chr16	90015210:90015222:90015972:90016046:90020650:90020784,	90015973	90016046	90015979	90015979	Frame_Shift_Del	G	-	p.G36fs
LIHC	TCGA-DD-A3A0-01	VPS53	ENST00000573028.1,ENST00000401468.3,ENST00000437048.2,ENST00000576149.1,ENST00000572607.1,ENST00000291074.5,ENST00000446250.2,ENST00000389040.5,ENST00000571805.1	chr17	456672:456702:463665:463813:465742:465926,	463666	463813	463763	463763	Frame_Shift_Del	T	-	p.K536fs
LIHC	TCGA-DD-A3A0-01	FAM57A	ENST00000308278.8,ENST00000570699.1	chr17	636364:636421:641085:641287:644540:644570,636364:636421:641085:641287:643744:643826,	641086	641287	641114	641114	Frame_Shift_Del	T	-	p.F79fs
LIHC	TCGA-DD-A3A0-01	ABR	ENST00000574437.1,ENST00000536794.2,ENST00000291107.2,ENST00000544583.2,ENST00000574544.1,ENST00000302538.5	chr17	961209:961285:961984:962107:970316:970482,	961985	962107	962021	962021	Frame_Shift_Del	G	-	p.P377fs
LIHC	TCGA-DD-A3A0-01	YWHAE	ENST00000486241.1	chr17	1248621:1248793:1268152:1268352:1303340:1303429,1257504:1257641:1268152:1268352:1303340:1303429,1265223:1265302:1268152:1268352:1273002:1273035,1265223:1265302:1268152:1268352:1303340:1303429,	1268153	1268352	1268202	1268202	Frame_Shift_Del	T	-	p.N72fs
LIHC	TCGA-DD-A3A0-01	PRPF8	ENST00000304992.6,ENST00000572621.1	chr17	1576650:1576861:1577039:1577186:1577735:1577974,	1577040	1577186	1577126	1577126	Frame_Shift_Del	G	-	p.P1120fs
LIHC	TCGA-DD-A3A0-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1703546	1703546	Frame_Shift_Del	A	-	p.L381fs
LIHC	TCGA-DD-A3A0-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1704102	1704102	Frame_Shift_Del	T	-	p.M196fs
LIHC	TCGA-DD-A3A0-01	TSR1	ENST00000301364.5	chr17	2236850:2237010:2237765:2238190:2238553:2238688,	2237766	2238190	2237927	2237927	Frame_Shift_Del	T	-	p.I274fs
LIHC	TCGA-DD-A3A0-01	PAFAH1B1	ENST00000570400.1	chr17	2541591:2541614:2569309:2569384:2570285:2570492,	2569310	2569384	2569341	2569341	Frame_Shift_Del	T	-	p.L51fs
LIHC	TCGA-DD-A3A0-01	ZZEF1	ENST00000381638.2	chr17	3974104:3974218:3975901:3976050:3977443:3977645,	3975902	3976050	3975961	3975961	Frame_Shift_Del	A	-	p.C1259fs
LIHC	TCGA-DD-A3A0-01	ANKFY1	ENST00000572412.1,ENST00000341657.4,ENST00000574367.1,ENST00000570535.1	chr17	4075850:4075975:4076648:4076739:4077203:4077351,	4076649	4076739	4076695	4076695	Frame_Shift_Del	C	-	p.V990fs
LIHC	TCGA-DD-A3A0-01	UBE2G1	ENST00000574633.1	chr17	4175591:4175811:4186092:4186216:4192524:4192662,4175591:4175811:4186092:4186216:4210315:4210418,	4186093	4186216	4186214	4186214	Frame_Shift_Del	T	-	p.K143fs
LIHC	TCGA-DD-A3A0-01	PELP1	ENST00000436683.2,ENST00000570571.1,ENST00000574876.1,ENST00000572293.1,ENST00000573523.1,ENST00000575329.1,ENST00000269230.7,ENST00000570387.1,ENST00000301396.4	chr17	4579795:4579802:4580047:4580107:4585796:4585868,	4580048	4580107	4580087	4580087	Frame_Shift_Del	A	-	p.F221fs
LIHC	TCGA-DD-A3A0-01	ARRB2	ENST00000346341.2	chr17	4623687:4623767:4623844:4623935:4624240:4624356,	4623845	4623935	4623859	4623859	Frame_Shift_Del	C	-	p.P352fs
LIHC	TCGA-DD-A3A0-01	CXCL16	ENST00000293778.6,ENST00000575168.1,ENST00000574412.1	chr17	4637883:4637947:4638386:4638803:4641702:4641785,	4638387	4638803	4638740	4638740	Frame_Shift_Del	G	-	p.P141fs
LIHC	TCGA-DD-A3A0-01	ZMYND15	ENST00000592813.1	chr17	4643336:4643345:4643813:4644435:4644876:4645111,	4643814	4644435	4644030	4644030	Frame_Shift_Del	C	-	p.P63fs
LIHC	TCGA-DD-A3A0-01	ZMYND15	ENST00000592813.1	chr17	4643336:4643345:4643813:4644435:4644876:4645111,	4643814	4644435	4644146	4644146	Frame_Shift_Del	C	-	p.S101fs
LIHC	TCGA-DD-A3A0-01	ZMYND15	ENST00000592813.1	chr17	4643336:4643345:4643813:4644435:4644876:4645111,	4643814	4644435	4644400	4644400	Frame_Shift_Del	A	-	p.E186fs
LIHC	TCGA-DD-A3A0-01	ZMYND15	ENST00000574829.1	chr17	4646597:4646750:4647061:4647402:4647484:4647573,	4647062	4647402	4647115	4647115	Frame_Shift_Del	C	-	p.P452fs
LIHC	TCGA-DD-A3A0-01	ZMYND15	ENST00000269289.6,ENST00000592813.1	chr17	4646597:4646750:4647061:4647142:4647484:4647573,	4647062	4647142	4647115	4647115	Frame_Shift_Del	C	-	p.P452fs
LIHC	TCGA-DD-A3A0-01	PSMB6	ENST00000571309.1,ENST00000270586.3	chr17	4701011:4701106:4701303:4701448:4701574:4701624,	4701304	4701448	4701321	4701321	Frame_Shift_Del	G	-	p.M150fs
LIHC	TCGA-DD-A3A0-01	PLD2	ENST00000572940.1,ENST00000263088.6,ENST00000571273.1,ENST00000576983.1	chr17	4721591:4721680:4721788:4721902:4722068:4722118,	4721789	4721902	4721818	4721818	Frame_Shift_Del	T	-	p.L681fs
LIHC	TCGA-DD-A3A0-01	RNF167	ENST00000262482.6,ENST00000571816.1,ENST00000572430.1,ENST00000575111.1,ENST00000572382.1,ENST00000576229.1	chr17	4846145:4846236:4846473:4846579:4846720:4846814,	4846474	4846579	4846528	4846528	Frame_Shift_Del	C	-	p.I175fs
LIHC	TCGA-DD-A3A0-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4876469:4876548:4876879:4877064:4877679:4877795,	4876880	4877064	4877003	4877003	Frame_Shift_Del	G	-	p.P692fs
LIHC	TCGA-DD-A3A0-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883390	4883390	Frame_Shift_Del	G	-	p.P408fs
LIHC	TCGA-DD-A3A0-01	KIF1C	ENST00000320785.5	chr17	4907861:4907940:4908149:4908295:4910209:4910379,	4908150	4908295	4908164	4908164	Frame_Shift_Del	C	-	p.T345fs
LIHC	TCGA-DD-A3A0-01	KIF1C	ENST00000320785.5	chr17	4907861:4907940:4908149:4908295:4910209:4910379,	4908150	4908295	4908264	4908264	Frame_Shift_Del	G	-	p.M378fs
LIHC	TCGA-DD-A3A0-01	RPAIN	ENST00000575599.1,ENST00000574003.1	chr17	5324615:5324786:5326088:5326149:5335861:5335928,5324615:5324786:5326088:5326149:5331390:5331531,	5326089	5326149	5326123	5326123	Frame_Shift_Del	A	-	p.E96fs
LIHC	TCGA-DD-A3A0-01	DERL2	ENST00000571971.1,ENST00000576551.1	chr17	5383443:5383464:5383706:5383863:5384420:5384459,	5383707	5383863	5383739	5383739	Frame_Shift_Del	A	-	p.L165fs
LIHC	TCGA-DD-A3A0-01	DERL2	ENST00000575605.1	chr17	5383443:5383464:5383706:5383779:5384420:5384459,	5383707	5383779	5383739	5383739	Frame_Shift_Del	A	-	p.L165fs
LIHC	TCGA-DD-A3A0-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5461679	5461679	Frame_Shift_Del	C	-	p.W779fs
LIHC	TCGA-DD-A3A0-01	KIAA0753	ENST00000361413.3,ENST00000570790.1,ENST00000542606.1	chr17	6524249:6524318:6526201:6526417:6526828:6526891,	6526202	6526417	6526270	6526270	Frame_Shift_Del	A	-	p.C346fs
LIHC	TCGA-DD-A3A0-01	SLC13A5	ENST00000573648.1	chr17	6590859:6590985:6594097:6594259:6596362:6596481,6589415:6589657:6594097:6594259:6596362:6596481,	6594098	6594259	6594201	6594201	Frame_Shift_Del	G	-	p.P445fs
LIHC	TCGA-DD-A3A0-01	YBX2	ENST00000571485.1,ENST00000007699.5,ENST00000571464.1,ENST00000570720.1,ENST00000571834.1	chr17	7192855:7193044:7193286:7193390:7193569:7193711,	7193287	7193390	7193314	7193314	Frame_Shift_Del	G	-	p.P275fs
LIHC	TCGA-DD-A3A0-01	EIF5A	ENST00000336458.8,ENST00000336452.7,ENST00000572815.1,ENST00000416016.2,ENST00000571955.1,ENST00000573542.1,ENST00000576930.1,ENST00000419711.2,ENST00000573714.1	chr17	7212933:7213119:7214336:7214441:7214668:7214800,	7214337	7214441	7214414	7214414	Frame_Shift_Del	C	-	p.V81fs
LIHC	TCGA-DD-A3A0-01	CHRNB1	ENST00000573209.1,ENST00000536404.2,ENST00000306071.2	chr17	7350821:7350969:7351897:7352107:7357615:7357839,	7351898	7352107	7351927	7351927	Frame_Shift_Del	C	-	p.P214fs
LIHC	TCGA-DD-A3A0-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578232	7578232	Frame_Shift_Del	A	-	p.L206fs
LIHC	TCGA-DD-A3A0-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796867	7796867	Frame_Shift_Del	C	-	p.A317fs
LIHC	TCGA-DD-A3A0-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796884	7796884	Frame_Shift_Del	A	-	p.K323fs
LIHC	TCGA-DD-A3A0-01	CHD3	ENST00000470531.1	chr17	7810670:7810806:7810918:7811020:7811211:7811337,7810670:7810806:7810918:7811020:7811208:7811337,	7810919	7811020	7810943	7810943	Frame_Shift_Del	G	-	p.R1709fs
LIHC	TCGA-DD-A3A0-01	CNTROB	ENST00000380255.3,ENST00000576723.1,ENST00000571632.1,ENST00000565740.1,ENST00000563694.1,ENST00000380262.3	chr17	7849045:7849304:7850888:7851040:7851233:7851297,	7850889	7851040	7850917	7850917	Frame_Shift_Del	C	-	p.F674fs
LIHC	TCGA-DD-A3A0-01	PER1	ENST00000317276.4	chr17	8045966:8046153:8046583:8047194:8048068:8048165,	8046584	8047194	8046772	8046772	Frame_Shift_Del	C	-	p.A962fs
LIHC	TCGA-DD-A3A0-01	MYH10	ENST00000396239.1,ENST00000360416.3,ENST00000269243.4,ENST00000379980.4	chr17	8438704:8438819:8439075:8439249:8445424:8445598,	8439076	8439249	8439183	8439183	Frame_Shift_Del	T	-	p.T558fs
LIHC	TCGA-DD-A3A0-01	USP43	ENST00000570475.1	chr17	9604668:9605017:9613272:9613431:9615284:9615449,9604668:9605002:9613272:9613431:9615284:9615449,	9613273	9613431	9613318	9613318	Frame_Shift_Del	A	-	p.D375fs
LIHC	TCGA-DD-A3A0-01	MYH3	ENST00000226209.7,ENST00000583535.1	chr17	10538156:10538340:10538683:10538880:10539051:10539170,	10538684	10538880	10538820	10538820	Frame_Shift_Del	C	-	p.E1346fs
LIHC	TCGA-DD-A3A0-01	DNAH9	ENST00000608377.1,ENST00000396001.2,ENST00000262442.4	chr17	11827130:11827258:11833182:11833410:11835330:11835522,	11833183	11833410	11833357	11833357	Frame_Shift_Del	C	-	p.P4019fs
LIHC	TCGA-DD-A3A0-01	ARHGAP44	ENST00000340825.3,ENST00000580768.1	chr17	12862033:12862214:12877405:12877627:12883374:12883550,	12877406	12877627	12877461	12877461	Frame_Shift_Del	G	-	p.G533fs
LIHC	TCGA-DD-A3A0-01	COX10	ENST00000537334.1,ENST00000536205.1,ENST00000261643.3,ENST00000581931.1,ENST00000580561.1	chr17	14063193:14063264:14095305:14095538:14110126:14110830,	14095306	14095538	14095369	14095369	Frame_Shift_Del	G	-	p.L253fs
LIHC	TCGA-DD-A3A0-01	ZSWIM7	ENST00000490395.1,ENST00000474716.1,ENST00000460315.1,ENST00000491631.1,ENST00000472495.1,ENST00000460252.1,ENST00000399280.2,ENST00000475498.1,ENST00000497719.1,ENST00000399277.1,ENST00000495825.2,ENST00000476496.1	chr17	15884353:15884458:15890579:15890682:15902832:15902903,15884353:15884458:15890579:15890682:15897070:15897092,	15890580	15890682	15890667	15890667	Frame_Shift_Del	A	-	p.F38fs
LIHC	TCGA-DD-A3A0-01	NCOR1	ENST00000458113.2	chr17	15968798:15969008:15971207:15971435:15973478:15973612,15968798:15969005:15971207:15971435:15973478:15973612,	15971208	15971435	15971301	15971301	Frame_Shift_Del	G	-	p.H1551fs
LIHC	TCGA-DD-A3A0-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16022736:16022799:16024365:16024583:16029395:16029520,	16024366	16024583	16024395	16024395	Frame_Shift_Del	G	-	p.P610fs
LIHC	TCGA-DD-A3A0-01	NCOR1	ENST00000411510.1,ENST00000582357.1,ENST00000460276.1,ENST00000436828.1,ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16040624:16040726:16041471:16041526:16042321:16042500,	16041472	16041526	16041506	16041506	Frame_Shift_Del	T	-	p.N458fs
LIHC	TCGA-DD-A3A0-01	UBB	ENST00000535788.1	chr17	16284408:16284498:16285215:16285444:16285672:16285675,	16285216	16285444	16285328	16285328	Frame_Shift_Del	T	-	p.I36fs
LIHC	TCGA-DD-A3A0-01	UBB	ENST00000535788.1	chr17	16284408:16284498:16285215:16285444:16285672:16285675,	16285216	16285444	16285330	16285330	Frame_Shift_Del	C	-	p.P38fs
LIHC	TCGA-DD-A3A0-01	COPS3	ENST00000577210.1,ENST00000578317.1,ENST00000584216.1,ENST00000539941.2,ENST00000268717.5,ENST00000486810.1	chr17	17158200:17158259:17165279:17165420:17168115:17168295,17163711:17163788:17165279:17165420:17168115:17168295,	17165280	17165420	17165365	17165365	Frame_Shift_Del	T	-	p.K206fs
LIHC	TCGA-DD-A3A0-01	COPS3	ENST00000462236.1,ENST00000584216.1,ENST00000417352.1,ENST00000477299.1,ENST00000268717.5	chr17	17174209:17174322:17179348:17179478:17184445:17184474,	17179349	17179478	17179437	17179437	Frame_Shift_Del	C	-	p.E13fs
LIHC	TCGA-DD-A3A0-01	COPS3	ENST00000578317.1,ENST00000492672.1	chr17	17174209:17174322:17179348:17179497:17184445:17184474,	17179349	17179497	17179437	17179437	Frame_Shift_Del	C	-	p.E13fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696797	17696797	Frame_Shift_Del	C	-	p.P179fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696871	17696871	Frame_Shift_Del	C	-	p.F203fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696955	17696955	Frame_Shift_Del	G	-	p.Q231fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17697294	17697294	Frame_Shift_Del	C	-	p.H344fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698137	17698137	Frame_Shift_Del	T	-	p.A625fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698606	17698606	Frame_Shift_Del	G	-	p.G782fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17701037	17701037	Frame_Shift_Del	C	-	p.T1592fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17701123	17701123	Frame_Shift_Del	C	-	p.P1621fs
LIHC	TCGA-DD-A3A0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17701129	17701129	Frame_Shift_Del	C	-	p.P1623fs
LIHC	TCGA-DD-A3A0-01	TOM1L2	ENST00000540946.1	chr17	17787947:17788082:17796974:17797124:17801909:17801988,17786018:17786177:17796974:17797124:17801909:17801988,17782940:17783057:17796974:17797124:17801909:17801988,	17796975	17797124	17797037	17797037	Frame_Shift_Del	T	-	p.I103fs
LIHC	TCGA-DD-A3A0-01	LLGL1	ENST00000316843.4	chr17	18140148:18140253:18140794:18141087:18141380:18141528,	18140795	18141087	18141025	18141025	Frame_Shift_Del	T	-	p.A614fs
LIHC	TCGA-DD-A3A0-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181552	18181552	Frame_Shift_Del	C	-	p.G755fs
LIHC	TCGA-DD-A3A0-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181559	18181559	Frame_Shift_Del	A	-	p.S753fs
LIHC	TCGA-DD-A3A0-01	LGALS9C	ENST00000579773.1,ENST00000577265.1,ENST00000583322.1,ENST00000412421.2,ENST00000328114.6,ENST00000580674.1	chr17	18395770:18395859:18396010:18396173:18397534:18397642,	18396011	18396173	18396140	18396140	Frame_Shift_Del	A	-	p.R297fs
LIHC	TCGA-DD-A3A0-01	PRPSAP2	ENST00000395656.2,ENST00000268835.2,ENST00000574451.1,ENST00000419071.2,ENST00000536323.1,ENST00000492129.1	chr17	18827226:18827297:18832123:18832270:18833852:18834047,	18832124	18832270	18832236	18832236	Frame_Shift_Del	C	-	p.A306fs
LIHC	TCGA-DD-A3A0-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232950	19232950	Frame_Shift_Del	A	-	p.S467fs
LIHC	TCGA-DD-A3A0-01	EPN2	ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000314728.5	chr17	19232873:19232960:19235165:19235381:19237268:19237643,	19235166	19235381	19235234	19235234	Frame_Shift_Del	C	-	p.P494fs
LIHC	TCGA-DD-A3A0-01	MAPK7	ENST00000299612.7,ENST00000490660.2,ENST00000395602.4,ENST00000395604.3,ENST00000308406.5,ENST00000570306.1	chr17	19285093:19285779:19286125:19286259:19286390:19286652,	19286126	19286259	19286141	19286141	Frame_Shift_Del	C	-	p.P728fs
LIHC	TCGA-DD-A3A0-01	MFAP4	ENST00000571210.1,ENST00000299610.4,ENST00000395592.2	chr17	19288670:19288767:19289622:19289777:19290072:19290094,	19289623	19289777	19289686	19289686	Frame_Shift_Del	G	-	p.P83fs
LIHC	TCGA-DD-A3A0-01	RNF112	ENST00000461366.1	chr17	19315810:19316096:19316250:19316457:19316592:19316711,	19316251	19316457	19316394	19316394	Frame_Shift_Del	G	-	p.L175fs
LIHC	TCGA-DD-A3A0-01	SLC47A2	ENST00000325411.5,ENST00000350657.5,ENST00000467379.1,ENST00000463318.1,ENST00000467609.1,ENST00000574220.1,ENST00000433844.2,ENST00000574239.1	chr17	19612028:19612073:19616015:19616058:19617137:19617286,	19616016	19616058	19616032	19616032	Frame_Shift_Del	A	-	p.F157fs
LIHC	TCGA-DD-A3A0-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20108068	20108068	Frame_Shift_Del	T	-	p.F155fs
LIHC	TCGA-DD-A3A0-01	WSB1	ENST00000348811.2,ENST00000262394.2,ENST00000467843.2	chr17	25637086:25637200:25638534:25638642:25639235:25639913,	25638535	25638642	25638600	25638600	Frame_Shift_Del	T	-	p.L355fs
LIHC	TCGA-DD-A3A0-01	LGALS9	ENST00000413914.2,ENST00000395473.2,ENST00000580779.1,ENST00000584661.1	chr17	25969263:25969374:25970550:25970646:25972339:25972375,	25970551	25970646	25970642	25970642	Frame_Shift_Del	A	-	p.Q179fs
LIHC	TCGA-DD-A3A0-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449693	26449693	Frame_Shift_Del	A	-	p.N175fs
LIHC	TCGA-DD-A3A0-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
LIHC	TCGA-DD-A3A0-01	SLC13A2	ENST00000459818.2,ENST00000537681.1	chr17	26816231:26816360:26817324:26817386:26817471:26817608,	26817325	26817386	26817364	26817364	Frame_Shift_Del	G	-	p.G91fs
LIHC	TCGA-DD-A3A0-01	SLC13A2	ENST00000545060.1,ENST00000541739.2,ENST00000579281.1,ENST00000314669.5,ENST00000459818.2,ENST00000537681.1,ENST00000444914.3,ENST00000577903.1	chr17	26817718:26817924:26818454:26818635:26818747:26818870,	26818455	26818635	26818495	26818495	Frame_Shift_Del	G	-	p.E254fs
LIHC	TCGA-DD-A3A0-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26850978:26851110:26851520:26851985:26854268:26854379,	26851521	26851985	26851707	26851707	Frame_Shift_Del	T	-	p.F104fs
LIHC	TCGA-DD-A3A0-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26861352:26861556:26861724:26862216:26864134:26864454,	26861725	26862216	26861988	26861988	Frame_Shift_Del	C	-	p.P468fs
LIHC	TCGA-DD-A3A0-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26959959:26960180:26960300:26960419:26960566:26960671,	26960301	26960419	26960334	26960334	Frame_Shift_Del	C	-	p.G1184fs
LIHC	TCGA-DD-A3A0-01	KIAA0100	ENST00000577261.1	chr17	26959959:26960180:26960300:26960347:26960566:26960671,	26960301	26960347	26960334	26960334	Frame_Shift_Del	C	-	p.G1184fs
LIHC	TCGA-DD-A3A0-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26960566:26960769:26960912:26961104:26961534:26961688,	26960913	26961104	26961073	26961073	Frame_Shift_Del	A	-	p.F1034fs
LIHC	TCGA-DD-A3A0-01	KIAA0100	ENST00000583403.1,ENST00000528896.2,ENST00000577417.1,ENST00000389003.3,ENST00000577580.1,ENST00000544884.1,ENST00000580882.1	chr17	26967577:26967701:26968906:26969096:26969292:26969353,	26968907	26969096	26969047	26969047	Frame_Shift_Del	T	-	p.K209fs
LIHC	TCGA-DD-A3A0-01	SUPT6H	ENST00000347486.4,ENST00000314616.6	chr17	27009744:27009874:27009959:27010110:27010285:27010440,	27009960	27010110	27010088	27010088	Frame_Shift_Del	C	-	p.T619fs
LIHC	TCGA-DD-A3A0-01	SUPT6H	ENST00000347486.4,ENST00000314616.6	chr17	27027363:27027530:27027958:27028146:27028456:27028557,	27027959	27028146	27027964	27027964	Frame_Shift_Del	C	-	p.F1604fs
LIHC	TCGA-DD-A3A0-01	DHRS13	ENST00000394901.3,ENST00000378895.4	chr17	27225840:27225910:27228007:27228319:27228510:27228634,	27228008	27228319	27228107	27228107	Frame_Shift_Del	G	-	p.R145fs
LIHC	TCGA-DD-A3A0-01	PHF12	ENST00000332830.4,ENST00000589176.1	chr17	27233122:27233535:27233873:27234012:27234607:27234690,	27233874	27234012	27233890	27233890	Frame_Shift_Del	T	-	p.K888fs
LIHC	TCGA-DD-A3A0-01	PHF12	ENST00000582436.1,ENST00000577226.1,ENST00000332830.4	chr17	27237243:27237387:27238129:27238255:27239499:27239804,	27238130	27238255	27238239	27238239	Frame_Shift_Del	G	-	p.P702fs
LIHC	TCGA-DD-A3A0-01	MYO18A	ENST00000354329.4,ENST00000530254.2,ENST00000527372.1,ENST00000531253.1,ENST00000533112.1	chr17	27421953:27422077:27423778:27423933:27424240:27424368,	27423779	27423933	27423821	27423821	Frame_Shift_Del	C	-	p.G1448fs
LIHC	TCGA-DD-A3A0-01	MYO18A	ENST00000530254.2,ENST00000527372.1,ENST00000531253.1,ENST00000533112.1	chr17	27443461:27443473:27445062:27445207:27445394:27445458,	27445063	27445207	27445175	27445175	Frame_Shift_Del	A	-	p.F642fs
LIHC	TCGA-DD-A3A0-01	GIT1	ENST00000579937.1,ENST00000394869.3,ENST00000579536.1,ENST00000225394.3,ENST00000581348.1	chr17	27908355:27908398:27908759:27908854:27908944:27909162,	27908760	27908854	27908845	27908845	Frame_Shift_Del	C	-	p.G211fs
LIHC	TCGA-DD-A3A0-01	NSRP1	ENST00000247026.5	chr17	28443856:28443881:28445097:28445191:28483557:28483680,28444319:28444350:28445097:28445191:28499559:28499610,28443856:28443881:28445097:28445191:28499559:28499610,	28445098	28445191	28445142	28445142	Frame_Shift_Del	T	-	p.V22fs
LIHC	TCGA-DD-A3A0-01	BLMH	ENST00000584603.2,ENST00000580709.1,ENST00000261714.6	chr17	28614841:28614965:28616390:28616500:28618328:28618526,	28616391	28616500	28616399	28616399	Frame_Shift_Del	A	-	p.W105fs
LIHC	TCGA-DD-A3A0-01	CRLF3	ENST00000578692.1,ENST00000544695.1,ENST00000324238.6	chr17	29119457:29119590:29120467:29120690:29123177:29123355,	29120468	29120690	29120517	29120517	Frame_Shift_Del	C	-	p.W259fs
LIHC	TCGA-DD-A3A0-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29185178:29185341:29187450:29187630:29192721:29192818,	29187451	29187630	29187570	29187570	Frame_Shift_Del	A	-	p.K1026fs
LIHC	TCGA-DD-A3A0-01	ATAD5	ENST00000585133.1,ENST00000321990.4,ENST00000578295.1	chr17	29187450:29187630:29192721:29192818:29195350:29195430,	29192722	29192818	29192804	29192804	Frame_Shift_Del	A	-	p.I1073fs
LIHC	TCGA-DD-A3A0-01	ATAD5	ENST00000321990.4	chr17	29196513:29196664:29203391:29203568:29204433:29204567,	29203392	29203568	29203453	29203453	Frame_Shift_Del	A	-	p.P1223fs
LIHC	TCGA-DD-A3A0-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220315	29220315	Frame_Shift_Del	A	-	p.K1482fs
LIHC	TCGA-DD-A3A0-01	TEFM	ENST00000580840.1,ENST00000581216.1	chr17	29227430:29227580:29231083:29231547:29233185:29233253,	29231084	29231547	29231152	29231152	Frame_Shift_Del	T	-	p.R143fs
LIHC	TCGA-DD-A3A0-01	TEFM	ENST00000580840.1,ENST00000581216.1	chr17	29227430:29227580:29231083:29231547:29233185:29233253,	29231084	29231547	29231265	29231265	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-DD-A3A0-01	ADAP2	ENST00000580525.1,ENST00000585130.1,ENST00000581548.1,ENST00000580526.1,ENST00000330889.3	chr17	29261202:29261315:29271924:29272071:29276304:29276348,	29271925	29272071	29271991	29271991	Frame_Shift_Del	G	-	p.G193fs
LIHC	TCGA-DD-A3A0-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29654516:29654857:29657313:29657516:29661855:29662049,	29657314	29657516	29657418	29657418	Frame_Shift_Del	C	-	p.T1905fs
LIHC	TCGA-DD-A3A0-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683558	29683558	Frame_Shift_Del	C	-	p.P2567fs
LIHC	TCGA-DD-A3A0-01	RAB11FIP4	ENST00000394744.2,ENST00000325874.8	chr17	29844668:29844895:29848183:29848378:29848932:29849067,	29848184	29848378	29848236	29848236	Frame_Shift_Del	A	-	p.T207fs
LIHC	TCGA-DD-A3A0-01	RHBDL3	ENST00000538145.1	chr17	30594920:30594944:30611677:30611836:30615810:30615971,30593195:30593319:30611677:30611836:30615810:30615971,	30611678	30611836	30611683	30611683	Frame_Shift_Del	C	-	p.D47fs
LIHC	TCGA-DD-A3A0-01	MYO1D	ENST00000394649.4,ENST00000318217.5,ENST00000577352.1	chr17	30821736:30821933:30932104:30932259:30965739:30965853,	30932105	30932259	30932111	30932111	Frame_Shift_Del	A	-	p.F953fs
LIHC	TCGA-DD-A3A0-01	MYO1D	ENST00000579584.1,ENST00000394649.4,ENST00000318217.5,ENST00000577352.1	chr17	30932104:30932259:30965739:30965853:30980860:30980962,	30965740	30965853	30965815	30965815	Frame_Shift_Del	A	-	p.F878fs
LIHC	TCGA-DD-A3A0-01	TMEM98	ENST00000394642.3,ENST00000395149.2,ENST00000261713.4,ENST00000579849.1,ENST00000583437.2,ENST00000439138.1,ENST00000583120.1,ENST00000578289.1,ENST00000582227.1	chr17	31258610:31258677:31260191:31260323:31261308:31261326,	31260192	31260323	31260273	31260273	Frame_Shift_Del	C	-	p.N71fs
LIHC	TCGA-DD-A3A0-01	CCL7	ENST00000200307.4	chr17	32597242:32597385:32598164:32598282:32598715:32599259,	32598165	32598282	32598217	32598217	Frame_Shift_Del	C	-	p.I43fs
LIHC	TCGA-DD-A3A0-01	CCL7	ENST00000394627.1	chr17	32597242:32597385:32598111:32598282:32598715:32599259,	32598112	32598282	32598217	32598217	Frame_Shift_Del	C	-	p.I43fs
LIHC	TCGA-DD-A3A0-01	LIG3	ENST00000586435.1,ENST00000588109.1,ENST00000378526.4,ENST00000585740.1,ENST00000585941.1,ENST00000262327.5	chr17	33313112:33313150:33316484:33316682:33317981:33318084,	33316485	33316682	33316519	33316519	Frame_Shift_Del	C	-	p.S242fs
LIHC	TCGA-DD-A3A0-01	LIG3	ENST00000586435.1,ENST00000588109.1,ENST00000378526.4,ENST00000585740.1,ENST00000585941.1,ENST00000262327.5	chr17	33313112:33313150:33316484:33316682:33317981:33318084,	33316485	33316682	33316558	33316558	Frame_Shift_Del	C	-	p.D255fs
LIHC	TCGA-DD-A3A0-01	LIG3	ENST00000378526.4,ENST00000585740.1,ENST00000585941.1,ENST00000262327.5	chr17	33317981:33318133:33318689:33318856:33318976:33319054,	33318690	33318856	33318740	33318740	Frame_Shift_Del	C	-	p.F364fs
LIHC	TCGA-DD-A3A0-01	RAD51D	ENST00000460118.2,ENST00000586210.1	chr17	33433459:33433500:33434006:33434141:33434384:33434466,33433459:33433500:33434006:33434141:33445519:33445638,	33434007	33434141	33434027	33434027	Frame_Shift_Del	T	-	p.T154fs
LIHC	TCGA-DD-A3A0-01	RAD51D	ENST00000590380.1	chr17	33433404:33433500:33434006:33434080:33434384:33434466,	33434007	33434080	33434027	33434027	Frame_Shift_Del	T	-	p.T154fs
LIHC	TCGA-DD-A3A0-01	SLFN5	ENST00000542451.1	chr17	33570107:33570162:33585669:33586721:33587989:33588115,	33585670	33586721	33586261	33586261	Frame_Shift_Del	G	-	p.L184fs
LIHC	TCGA-DD-A3A0-01	SLFN5	ENST00000542451.1	chr17	33570107:33570162:33585669:33586721:33587989:33588115,	33585670	33586721	33586434	33586434	Frame_Shift_Del	A	-	p.E242fs
LIHC	TCGA-DD-A3A0-01	SLFN13	ENST00000285013.6	chr17	33770807:33770939:33771633:33772712:33774286:33774413,	33771634	33772712	33772611	33772611	Frame_Shift_Del	T	-	p.N30fs
LIHC	TCGA-DD-A3A0-01	SLFN13	ENST00000530782.1	chr17	33771633:33771720:33772391:33772712:33774286:33774413,	33772392	33772712	33772611	33772611	Frame_Shift_Del	T	-	p.N30fs
LIHC	TCGA-DD-A3A0-01	FBXL20	ENST00000264658.6,ENST00000583610.1,ENST00000577399.1	chr17	37438981:37439108:37453379:37453448:37455242:37455337,37441730:37441826:37453379:37453448:37455242:37455337,	37453380	37453448	37453387	37453387	Frame_Shift_Del	T	-	p.T131fs
LIHC	TCGA-DD-A3A0-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37579579:37579698:37579949:37580074:37580879:37580991,	37579950	37580074	37580018	37580018	Frame_Shift_Del	A	-	p.F304fs
LIHC	TCGA-DD-A3A0-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37587367:37587441:37588194:37588269:37590501:37590573,	37588195	37588269	37588246	37588246	Frame_Shift_Del	A	-	p.L175fs
LIHC	TCGA-DD-A3A0-01	STARD3	ENST00000580611.1	chr17	37817233:37817338:37818503:37818620:37819056:37819149,	37818504	37818620	37818520	37818520	Frame_Shift_Del	G	-	p.G387fs
LIHC	TCGA-DD-A3A0-01	STARD3	ENST00000544210.2,ENST00000394250.4,ENST00000336308.5,ENST00000584850.1,ENST00000488876.1,ENST00000585269.1,ENST00000578577.1,ENST00000471896.1	chr17	37817233:37817338:37818503:37818597:37819056:37819149,	37818504	37818597	37818520	37818520	Frame_Shift_Del	G	-	p.G387fs
LIHC	TCGA-DD-A3A0-01	STARD3	ENST00000580611.1	chr17	37817233:37817338:37818503:37818620:37819056:37819149,	37818504	37818620	37818608	37818608	Frame_Shift_Del	G	-	p.W389fs
LIHC	TCGA-DD-A3A0-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000578199.1,ENST00000540042.1,ENST00000269571.5,ENST00000582648.1,ENST00000584601.1,ENST00000583038.1,ENST00000540147.1,ENST00000582788.1	chr17	37868180:37868300:37868574:37868701:37871538:37871545,	37868575	37868701	37868594	37868594	Frame_Shift_Del	G	-	p.M317fs
LIHC	TCGA-DD-A3A0-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37881959:37882106:37882814:37882912:37883067:37883169,	37882815	37882912	37882888	37882888	Frame_Shift_Del	C	-	p.D952fs
LIHC	TCGA-DD-A3A0-01	ERBB2	ENST00000406381.2,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37883067:37883256:37883547:37883800:37883941:37884049,	37883548	37883800	37883774	37883774	Frame_Shift_Del	C	-	p.A1099fs
LIHC	TCGA-DD-A3A0-01	GSDMB	ENST00000522564.1,ENST00000418519.1,ENST00000360317.3,ENST00000523371.1,ENST00000309481.7	chr17	38062217:38062238:38062363:38062524:38064428:38064467,38062217:38062238:38062363:38062524:38066008:38066177,38062217:38062238:38062363:38062524:38063213:38063240,	38062364	38062524	38062512	38062512	Frame_Shift_Del	C	-	p.G225fs
LIHC	TCGA-DD-A3A0-01	GSDMB	ENST00000394175.2	chr17	38064428:38064467:38065210:38065295:38066008:38066177,38063213:38063240:38065210:38065295:38066008:38066177,38062447:38062524:38065210:38065295:38066008:38066177,	38065211	38065295	38065227	38065227	Frame_Shift_Del	G	-	p.P215fs
LIHC	TCGA-DD-A3A0-01	GSDMB	ENST00000394175.2	chr17	38064428:38064467:38065210:38065295:38066008:38066177,38063213:38063240:38065210:38065295:38066008:38066177,38062447:38062524:38065210:38065295:38066008:38066177,	38065211	38065295	38065270	38065270	Frame_Shift_Del	G	-	p.P201fs
LIHC	TCGA-DD-A3A0-01	PSMD3	ENST00000485835.1,ENST00000541736.1,ENST00000415039.3,ENST00000264639.4	chr17	38151206:38151321:38151428:38151548:38151676:38151780,	38151429	38151548	38151476	38151476	Frame_Shift_Del	T	-	p.F382fs
LIHC	TCGA-DD-A3A0-01	TNS4	ENST00000254051.6	chr17	38643287:38643712:38644797:38645221:38652238:38652772,	38644798	38645221	38644974	38644974	Frame_Shift_Del	G	-	p.P229fs
LIHC	TCGA-DD-A3A0-01	TNS4	ENST00000254051.6	chr17	38643287:38643712:38644797:38645221:38652238:38652772,	38644798	38645221	38644984	38644984	Frame_Shift_Del	G	-	p.P226fs
LIHC	TCGA-DD-A3A0-01	TNS4	ENST00000254051.6	chr17	38644797:38645221:38652238:38652772:38657785:38657849,	38652239	38652772	38652406	38652406	Frame_Shift_Del	G	-	p.P91fs
LIHC	TCGA-DD-A3A0-01	TNS4	ENST00000254051.6	chr17	38644797:38645221:38652238:38652772:38657785:38657849,	38652239	38652772	38652411	38652411	Frame_Shift_Del	C	-	p.G89fs
LIHC	TCGA-DD-A3A0-01	TNS4	ENST00000254051.6	chr17	38644797:38645221:38652238:38652772:38657785:38657849,	38652239	38652772	38652490	38652490	Frame_Shift_Del	G	-	p.P63fs
LIHC	TCGA-DD-A3A0-01	EIF1	ENST00000469257.1,ENST00000591776.1	chr17	39845241:39845321:39846029:39846193:39846339:39846441,	39846030	39846193	39846035	39846035	Frame_Shift_Del	T	-	p.F13fs
LIHC	TCGA-DD-A3A0-01	HAP1	ENST00000310778.5	chr17	39883304:39883396:39883549:39883705:39884013:39884088,	39883550	39883705	39883595	39883595	Frame_Shift_Del	T	-	p.P462fs
LIHC	TCGA-DD-A3A0-01	JUP	ENST00000393930.1,ENST00000393931.3,ENST00000449889.1,ENST00000310706.5,ENST00000420370.1,ENST00000424457.1,ENST00000437187.1	chr17	39925220:39925459:39925669:39925929:39927898:39928106,	39925670	39925929	39925801	39925801	Frame_Shift_Del	G	-	p.L113fs
LIHC	TCGA-DD-A3A0-01	FKBP10	ENST00000321562.4,ENST00000455106.1,ENST00000490938.1,ENST00000489591.1,ENST00000544340.1	chr17	39976520:39976713:39977198:39977341:39977905:39978069,	39977199	39977341	39977213	39977213	Frame_Shift_Del	C	-	p.A424fs
LIHC	TCGA-DD-A3A0-01	FKBP10	ENST00000321562.4,ENST00000455106.1,ENST00000490938.1,ENST00000489591.1,ENST00000544340.1	chr17	39976520:39976713:39977198:39977341:39977905:39978069,	39977199	39977341	39977311	39977311	Frame_Shift_Del	C	-	p.P458fs
LIHC	TCGA-DD-A3A0-01	NT5C3B	ENST00000269534.8,ENST00000415460.1,ENST00000523903.1,ENST00000393910.1,ENST00000435506.2,ENST00000445655.1	chr17	39991333:39991368:39991454:39991524:39992110:39992209,	39991455	39991524	39991475	39991475	Frame_Shift_Del	T	-	p.K46fs
LIHC	TCGA-DD-A3A0-01	NT5C3B	ENST00000445655.1	chr17	39991454:39991524:39992110:39992209:39992433:39992475,39991454:39991524:39992110:39992209:39992330:39992455,	39992111	39992209	39992200	39992200	Frame_Shift_Del	G	-	p.L8fs
LIHC	TCGA-DD-A3A0-01	NT5C3B	ENST00000495317.1	chr17	39991454:39991524:39991839:39992209:39992433:39992475,39991454:39991524:39991839:39992209:39992330:39992455,	39991840	39992209	39992200	39992200	Frame_Shift_Del	G	-	p.L8fs
LIHC	TCGA-DD-A3A0-01	ACLY	ENST00000352035.2,ENST00000592970.1,ENST00000393896.2,ENST00000353196.1,ENST00000590151.1	chr17	40066491:40066537:40068672:40068795:40069967:40070149,	40068673	40068795	40068686	40068686	Frame_Shift_Del	C	-	p.G90fs
LIHC	TCGA-DD-A3A0-01	DNAJC7	ENST00000588814.1,ENST00000316603.7,ENST00000426588.3,ENST00000457167.4,ENST00000586335.1	chr17	40134001:40134025:40134272:40134419:40135580:40135654,	40134273	40134419	40134398	40134398	Frame_Shift_Del	T	-	p.N369fs
LIHC	TCGA-DD-A3A0-01	DHX58	ENST00000586522.1,ENST00000251642.3	chr17	40257035:40257185:40257753:40258007:40259621:40259813,	40257754	40258007	40257902	40257902	Frame_Shift_Del	G	-	p.P368fs
LIHC	TCGA-DD-A3A0-01	DHX58	ENST00000413196.2,ENST00000251642.3,ENST00000430773.1	chr17	40263313:40263515:40263742:40263911:40264130:40264217,	40263743	40263911	40263758	40263758	Frame_Shift_Del	A	-	p.V52fs
LIHC	TCGA-DD-A3A0-01	KAT2A	ENST00000225916.5,ENST00000465682.1	chr17	40266017:40266102:40266236:40266300:40266375:40266412,	40266237	40266300	40266256	40266256	Frame_Shift_Del	T	-	p.N739fs
LIHC	TCGA-DD-A3A0-01	KAT2A	ENST00000225916.5,ENST00000465682.1	chr17	40269695:40269832:40269924:40270035:40270314:40270421,	40269925	40270035	40269989	40269989	Frame_Shift_Del	G	-	p.P409fs
LIHC	TCGA-DD-A3A0-01	GHDC	ENST00000414034.3	chr17	40341107:40341939:40342202:40342377:40342641:40342775,	40342203	40342377	40342236	40342236	Frame_Shift_Del	C	-	p.G447fs
LIHC	TCGA-DD-A3A0-01	GHDC	ENST00000587427.1,ENST00000301671.8,ENST00000428494.2	chr17	40340816:40341105:40342202:40342288:40342641:40342775,40341107:40341939:40342202:40342288:40342641:40342775,	40342203	40342288	40342236	40342236	Frame_Shift_Del	C	-	p.G447fs
LIHC	TCGA-DD-A3A0-01	STAT5B	ENST00000293328.3	chr17	40354774:40354826:40359575:40359746:40362188:40362319,	40359576	40359746	40359622	40359622	Frame_Shift_Del	T	-	p.E677fs
LIHC	TCGA-DD-A3A0-01	STAT5B	ENST00000293328.3,ENST00000481253.2	chr17	40359599:40359746:40362188:40362319:40362420:40362515,	40362189	40362319	40362311	40362311	Frame_Shift_Del	A	-	p.L595fs
LIHC	TCGA-DD-A3A0-01	STAT3	ENST00000498330.1,ENST00000585517.1,ENST00000264657.5,ENST00000404395.3,ENST00000389272.3,ENST00000588969.1	chr17	40475081:40475161:40475277:40475372:40475590:40475643,	40475278	40475372	40475305	40475305	Frame_Shift_Del	T	-	p.K574fs
LIHC	TCGA-DD-A3A0-01	STAT3	ENST00000585517.1	chr17	40498613:40498731:40500406:40500538:40540296:40540432,	40500407	40500538	40500428	40500428	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-DD-A3A0-01	STAT3	ENST00000404395.3,ENST00000588969.1	chr17	40498613:40498731:40500406:40500535:40540296:40540432,	40500407	40500535	40500428	40500428	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-DD-A3A0-01	COASY	ENST00000421097.2	chr17	40714168:40714237:40714629:40715340:40715978:40716193,	40714630	40715340	40715173	40715173	Frame_Shift_Del	C	-	p.S178fs
LIHC	TCGA-DD-A3A0-01	COASY	ENST00000420359.1	chr17	40714168:40714237:40714373:40715340:40715978:40716193,	40714374	40715340	40715173	40715173	Frame_Shift_Del	C	-	p.S178fs
LIHC	TCGA-DD-A3A0-01	COASY	ENST00000591779.1,ENST00000449624.1	chr17	40714168:40714237:40714950:40715340:40715978:40716193,	40714951	40715340	40715173	40715173	Frame_Shift_Del	C	-	p.S178fs
LIHC	TCGA-DD-A3A0-01	TUBG1	ENST00000251413.3,ENST00000589688.1	chr17	40765664:40765751:40765866:40766016:40766277:40766430,	40765867	40766016	40765994	40765994	Frame_Shift_Del	C	-	p.T274fs
LIHC	TCGA-DD-A3A0-01	TUBG2	ENST00000588870.1,ENST00000251412.7	chr17	40811851:40811964:40812166:40812334:40812656:40812725,	40812167	40812334	40812330	40812330	Frame_Shift_Del	C	-	p.S109fs
LIHC	TCGA-DD-A3A0-01	EZH1	ENST00000592743.1,ENST00000586103.1,ENST00000585912.1,ENST00000590078.1,ENST00000435174.1,ENST00000415827.2,ENST00000428826.2,ENST00000585893.1,ENST00000585550.1,ENST00000588897.1,ENST00000591330.1	chr17	40857105:40857201:40858024:40858203:40859975:40860101,	40858025	40858203	40858078	40858078	Frame_Shift_Del	C	-	p.D596fs
LIHC	TCGA-DD-A3A0-01	EZH1	ENST00000592743.1,ENST00000586089.1	chr17	40879679:40879781:40880842:40880970:40882845:40882936,40879679:40879781:40880842:40880970:40897028:40897033,	40880843	40880970	40880856	40880856	Frame_Shift_Del	T	-	p.N35fs
LIHC	TCGA-DD-A3A0-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40948140:40948340:40948498:40948596:40948703:40948954,	40948499	40948596	40948563	40948563	Frame_Shift_Del	G	-	p.1232fs
LIHC	TCGA-DD-A3A0-01	PSME3	ENST00000589469.1,ENST00000543428.1,ENST00000591722.1,ENST00000591152.1,ENST00000590720.1,ENST00000541124.1,ENST00000441946.2,ENST00000593111.1,ENST00000293362.3,ENST00000586114.1,ENST00000585805.1,ENST00000586312.1,ENST00000545225.1	chr17	40986558:40986594:40986788:40986893:40989665:40989714,	40986789	40986893	40986848	40986848	Frame_Shift_Del	C	-	p.V66fs
LIHC	TCGA-DD-A3A0-01	G6PC	ENST00000253801.2	chr17	41055947:41056057:41059539:41059645:41061319:41061435,	41059540	41059645	41059544	41059544	Frame_Shift_Del	C	-	p.S115fs
LIHC	TCGA-DD-A3A0-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000585505.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41342625:41342793:41343388:41343598:41345110:41345270,	41343389	41343598	41343420	41343420	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-DD-A3A0-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41348958:41349123:41352183:41352625:41353702:41353797,	41352184	41352625	41352389	41352389	Frame_Shift_Del	C	-	p.R744fs
LIHC	TCGA-DD-A3A0-01	DHX8	ENST00000262415.3,ENST00000540306.1,ENST00000587044.1	chr17	41585176:41585387:41585706:41585888:41590729:41590870,	41585707	41585888	41585782	41585782	Frame_Shift_Del	C	-	p.S799fs
LIHC	TCGA-DD-A3A0-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610562	41610562	Frame_Shift_Del	C	-	p.E180fs
LIHC	TCGA-DD-A3A0-01	CD300LG	ENST00000539718.1,ENST00000317310.4	chr17	41925925:41926261:41930279:41930381:41931174:41931412,	41930280	41930381	41930361	41930361	Frame_Shift_Del	A	-	p.Q154fs
LIHC	TCGA-DD-A3A0-01	MPP2	ENST00000520319.1,ENST00000521178.1,ENST00000518766.1,ENST00000522172.1,ENST00000269095.4,ENST00000523934.1,ENST00000524294.1,ENST00000520406.1	chr17	41960653:41960723:41975629:41975748:41981797:41981861,	41975630	41975748	41975711	41975711	Frame_Shift_Del	G	-	p.P23fs
LIHC	TCGA-DD-A3A0-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000592385.1,ENST00000593013.1,ENST00000588419.1,ENST00000225983.6	chr17	42160912:42161020:42161172:42161222:42161922:42162043,	42161173	42161222	42161211	42161211	Frame_Shift_Del	G	-	p.Q774fs
LIHC	TCGA-DD-A3A0-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000592385.1,ENST00000336057.5,ENST00000225983.6	chr17	42164779:42165064:42165754:42165966:42168637:42168860,	42165755	42165966	42165838	42165838	Frame_Shift_Del	G	-	p.Q507fs
LIHC	TCGA-DD-A3A0-01	UBTF	ENST00000302904.4,ENST00000529383.1,ENST00000436088.1	chr17	42289240:42289374:42289711:42289822:42290186:42290307,	42289712	42289822	42289761	42289761	Frame_Shift_Del	T	-	p.K241fs
LIHC	TCGA-DD-A3A0-01	SLC4A1	ENST00000262418.6	chr17	42328528:42328700:42328786:42328956:42330485:42330739,	42328787	42328956	42328820	42328820	Frame_Shift_Del	G	-	p.P816fs
LIHC	TCGA-DD-A3A0-01	SLC25A39	ENST00000588767.1	chr17	42397722:42397804:42397989:42398117:42398425:42398477,	42397990	42398117	42398051	42398051	Frame_Shift_Del	A	-	p.F239fs
LIHC	TCGA-DD-A3A0-01	SLC25A39	ENST00000537904.2,ENST00000591006.1,ENST00000377095.5,ENST00000590194.1,ENST00000225308.8,ENST00000592372.1,ENST00000586016.1	chr17	42397722:42397804:42397989:42398099:42398665:42398892,42397722:42397804:42397989:42398099:42398425:42398477,	42397990	42398099	42398051	42398051	Frame_Shift_Del	A	-	p.F239fs
LIHC	TCGA-DD-A3A0-01	ITGA2B	ENST00000377068.3,ENST00000592226.1,ENST00000353281.4,ENST00000262407.5	chr17	42458246:42458429:42460860:42461072:42461261:42461314,	42460861	42461072	42460966	42460966	Frame_Shift_Del	G	-	p.H369fs
LIHC	TCGA-DD-A3A0-01	DBF4B	ENST00000528353.1,ENST00000315005.3,ENST00000526924.1,ENST00000532789.1,ENST00000528766.1,ENST00000525140.1,ENST00000398338.3,ENST00000393547.2	chr17	42786671:42786734:42800247:42800390:42807272:42807464,	42800248	42800390	42800322	42800322	Frame_Shift_Del	T	-	p.F53fs
LIHC	TCGA-DD-A3A0-01	EFTUD2	ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000426333.2	chr17	42945654:42945718:42949813:42949938:42953301:42953468,	42949814	42949938	42949882	42949882	Frame_Shift_Del	A	-	p.F309fs
LIHC	TCGA-DD-A3A0-01	EFTUD2	ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000426333.2	chr17	42945654:42945718:42949813:42949938:42953301:42953468,	42949814	42949938	42949907	42949907	Frame_Shift_Del	A	-	p.S301fs
LIHC	TCGA-DD-A3A0-01	KIF18B	ENST00000593135.1,ENST00000438933.2,ENST00000587309.1,ENST00000339151.4,ENST00000590129.1	chr17	43011600:43011798:43011874:43011985:43012198:43012303,	43011875	43011985	43011920	43011920	Frame_Shift_Del	G	-	p.P214fs
LIHC	TCGA-DD-A3A0-01	DCAKD	ENST00000588499.1,ENST00000342350.5,ENST00000452796.2,ENST00000593094.1	chr17	43101869:43102092:43107459:43107547:43111554:43111758,	43107460	43107547	43107518	43107518	Frame_Shift_Del	G	-	p.L117fs
LIHC	TCGA-DD-A3A0-01	NMT1	ENST00000590114.1,ENST00000592782.1,ENST00000585561.1,ENST00000258960.2	chr17	43163875:43164020:43171052:43171171:43173561:43173653,	43171053	43171171	43171119	43171119	Frame_Shift_Del	C	-	p.T151fs
LIHC	TCGA-DD-A3A0-01	ACBD4	ENST00000321854.8,ENST00000591859.1,ENST00000591136.1,ENST00000589798.1,ENST00000586346.1,ENST00000592162.1,ENST00000398322.3,ENST00000589752.1,ENST00000431281.1,ENST00000590289.1,ENST00000376955.4,ENST00000585553.1	chr17	43214058:43214143:43214385:43214506:43214734:43214821,	43214386	43214506	43214476	43214476	Frame_Shift_Del	C	-	p.P130fs
LIHC	TCGA-DD-A3A0-01	CRHR1	ENST00000352855.5,ENST00000293493.7,ENST00000398285.3,ENST00000314537.5,ENST00000347197.5	chr17	43910817:43910903:43911079:43911215:43911989:43912207,43910817:43910903:43911079:43911215:43911372:43911414,	43911080	43911215	43911119	43911119	Frame_Shift_Del	G	-	p.L323fs
LIHC	TCGA-DD-A3A0-01	MAPT	ENST00000570299.1,ENST00000334239.8,ENST00000446361.3	chr17	43972039:43972052:44039686:44039836:44049224:44049311,43972039:43972052:44039686:44039836:44055740:44055791,	44039687	44039836	44039763	44039763	Frame_Shift_Del	G	-	p.L20fs
LIHC	TCGA-DD-A3A0-01	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44061060	44061060	Frame_Shift_Del	C	-	p.A297fs
LIHC	TCGA-DD-A3A0-01	KANSL1	ENST00000393476.3,ENST00000576137.1,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000576870.1,ENST00000572218.1	chr17	44110768:44110826:44111526:44111651:44115903:44116052,	44111527	44111651	44111556	44111556	Frame_Shift_Del	T	-	p.K879fs
LIHC	TCGA-DD-A3A0-01	KANSL1	ENST00000575318.1	chr17	44110768:44110826:44111526:44111648:44115903:44116052,	44111527	44111648	44111556	44111556	Frame_Shift_Del	T	-	p.K879fs
LIHC	TCGA-DD-A3A0-01	KANSL1	ENST00000393476.3,ENST00000575318.1	chr17	44116024:44116052:44117067:44117250:44127898:44128070,	44117068	44117250	44117156	44117156	Frame_Shift_Del	A	-	p.L705fs
LIHC	TCGA-DD-A3A0-01	KANSL1	ENST00000393476.3,ENST00000575318.1	chr17	44116024:44116052:44117067:44117250:44127898:44128070,	44117068	44117250	44117166	44117166	Frame_Shift_Del	T	-	p.K702fs
LIHC	TCGA-DD-A3A0-01	GOSR2	ENST00000393456.2,ENST00000439730.2,ENST00000225567.4,ENST00000570879.1	chr17	45009432:45009565:45012394:45012535:45015964:45016070,	45012395	45012535	45012498	45012498	Frame_Shift_Del	T	-	p.I147fs
LIHC	TCGA-DD-A3A0-01	CDC27	ENST00000066544.3,ENST00000527547.1,ENST00000533415.1,ENST00000571643.1,ENST00000446365.2,ENST00000531206.1	chr17	45206758:45206887:45209622:45209740:45214517:45214610,	45209623	45209740	45209674	45209674	Frame_Shift_Del	T	-	p.K660fs
LIHC	TCGA-DD-A3A0-01	NPEPPS	ENST00000525021.1,ENST00000530514.1	chr17	45668082:45668247:45669269:45669426:45669850:45669911,	45669270	45669426	45669379	45669379	Frame_Shift_Del	A	-	p.K440fs
LIHC	TCGA-DD-A3A0-01	NPEPPS	ENST00000527298.1,ENST00000527964.1,ENST00000527360.1,ENST00000602788.1,ENST00000544660.1,ENST00000525037.1,ENST00000534814.1,ENST00000322157.4,ENST00000533538.1,ENST00000530173.1	chr17	45668082:45668247:45669321:45669426:45669850:45669911,	45669322	45669426	45669379	45669379	Frame_Shift_Del	A	-	p.K440fs
LIHC	TCGA-DD-A3A0-01	NPEPPS	ENST00000534807.1,ENST00000544660.1,ENST00000322157.4,ENST00000530514.1,ENST00000530173.1	chr17	45673718:45673828:45677041:45677105:45678973:45679113,	45677042	45677105	45677070	45677070	Frame_Shift_Del	C	-	p.S522fs
LIHC	TCGA-DD-A3A0-01	OSBPL7	ENST00000392507.3,ENST00000007414.3	chr17	45890952:45891200:45891886:45891980:45892580:45892718,	45891887	45891980	45891957	45891957	Frame_Shift_Del	A	-	p.C427fs
LIHC	TCGA-DD-A3A0-01	MRPL10	ENST00000290208.7,ENST00000414011.1,ENST00000421763.1,ENST00000351111.2	chr17	45900948:45901824:45904002:45904147:45904405:45904570,	45904003	45904147	45904088	45904088	Frame_Shift_Del	C	-	p.G159fs
LIHC	TCGA-DD-A3A0-01	COPZ2	ENST00000006101.4,ENST00000584666.1,ENST00000581756.1,ENST00000579263.1	chr17	46110051:46110107:46110576:46110668:46111228:46111238,	46110577	46110668	46110652	46110652	Frame_Shift_Del	A	-	p.F93fs
LIHC	TCGA-DD-A3A0-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
LIHC	TCGA-DD-A3A0-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
LIHC	TCGA-DD-A3A0-01	NFE2L1	ENST00000585291.1,ENST00000357480.5	chr17	46128478:46128990:46133747:46133960:46134705:46134860,	46133748	46133960	46133792	46133792	Frame_Shift_Del	G	-	p.L185fs
LIHC	TCGA-DD-A3A0-01	CBX1	ENST00000495350.1,ENST00000225603.4,ENST00000402583.1	chr17	46153362:46153540:46154226:46154403:46178629:46178649,	46154227	46154403	46154355	46154355	Frame_Shift_Del	T	-	p.K4fs
LIHC	TCGA-DD-A3A0-01	IGF2BP1	ENST00000290341.3	chr17	47109271:47109335:47115529:47115811:47117318:47117453,	47115530	47115811	47115688	47115688	Frame_Shift_Del	C	-	p.A187fs
LIHC	TCGA-DD-A3A0-01	KAT7	ENST00000509773.1,ENST00000454930.2,ENST00000424009.2,ENST00000512616.1,ENST00000435742.2,ENST00000503935.2,ENST00000508594.1,ENST00000510819.1,ENST00000259021.4,ENST00000513171.1	chr17	47893164:47893275:47895181:47895373:47898698:47898788,	47895182	47895373	47895230	47895230	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-DD-A3A0-01	PDK2	ENST00000512204.1,ENST00000503176.1,ENST00000007708.3,ENST00000506647.1	chr17	48185975:48186083:48186650:48186764:48187320:48187348,	48186651	48186764	48186738	48186738	Frame_Shift_Del	G	-	p.G353fs
LIHC	TCGA-DD-A3A0-01	XYLT2	ENST00000017003.2	chr17	48433871:48434134:48435567:48435901:48437329:48438512,48434478:48434613:48435567:48435901:48437329:48438512,	48435568	48435901	48435819	48435819	Frame_Shift_Del	C	-	p.L732fs
LIHC	TCGA-DD-A3A0-01	ACSF2	ENST00000502667.1,ENST00000511147.1,ENST00000504392.1,ENST00000510410.1,ENST00000541920.1,ENST00000427954.2,ENST00000300441.4,ENST00000506085.1	chr17	48551025:48551167:48551254:48551365:48551559:48551617,	48551255	48551365	48551281	48551281	Frame_Shift_Del	G	-	p.M573fs
LIHC	TCGA-DD-A3A0-01	EPN3	ENST00000268933.3	chr17	48616244:48616325:48616547:48616676:48617607:48617695,	48616548	48616676	48616565	48616565	Frame_Shift_Del	G	-	p.Q260fs
LIHC	TCGA-DD-A3A0-01	ABCC3	ENST00000427699.1,ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48712282:48712342:48733192:48733369:48734062:48734082,	48733193	48733369	48733364	48733364	Frame_Shift_Del	A	-	p.K73fs
LIHC	TCGA-DD-A3A0-01	SPAG9	ENST00000514613.1,ENST00000505173.1,ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1	chr17	49072804:49072894:49073925:49074055:49075804:49075978,	49073926	49074055	49073995	49073995	Frame_Shift_Del	T	-	p.K633fs
LIHC	TCGA-DD-A3A0-01	SPAG9	ENST00000514613.1,ENST00000505173.1,ENST00000576492.1,ENST00000505279.1,ENST00000357122.4,ENST00000262013.7,ENST00000510283.1	chr17	49084629:49084687:49091592:49091714:49097519:49097619,	49091593	49091714	49091681	49091681	Frame_Shift_Del	A	-	p.F375fs
LIHC	TCGA-DD-A3A0-01	MBTD1	ENST00000376381.2,ENST00000591270.1	chr17	49270142:49270377:49270788:49270871:49272574:49272722,49270142:49270377:49270788:49270871:49278952:49279057,	49270789	49270871	49270846	49270846	Frame_Shift_Del	C	-	p.W466fs
LIHC	TCGA-DD-A3A0-01	MBTD1	ENST00000415868.1,ENST00000405860.3,ENST00000586178.1	chr17	49270788:49270871:49272574:49272722:49278952:49279057,	49272575	49272722	49272625	49272625	Frame_Shift_Del	A	-	p.F441fs
LIHC	TCGA-DD-A3A0-01	UTP18	ENST00000225298.7	chr17	49362628:49362729:49365389:49365564:49371263:49371406,	49365390	49365564	49365534	49365534	Frame_Shift_Del	T	-	p.A491fs
LIHC	TCGA-DD-A3A0-01	UTP18	ENST00000583205.1	chr17	49362628:49362729:49365484:49365564:49371263:49371406,	49365485	49365564	49365534	49365534	Frame_Shift_Del	T	-	p.A491fs
LIHC	TCGA-DD-A3A0-01	UTP18	ENST00000225298.7	chr17	49362628:49362729:49365389:49365564:49371263:49371406,	49365390	49365564	49365539	49365539	Frame_Shift_Del	A	-	p.E493fs
LIHC	TCGA-DD-A3A0-01	UTP18	ENST00000583205.1	chr17	49362628:49362729:49365484:49365564:49371263:49371406,	49365485	49365564	49365539	49365539	Frame_Shift_Del	A	-	p.E493fs
LIHC	TCGA-DD-A3A0-01	TOM1L1	ENST00000572158.1,ENST00000572405.1,ENST00000570977.1,ENST00000575882.1,ENST00000575333.1,ENST00000570371.1,ENST00000536554.1,ENST00000575909.1,ENST00000572576.1,ENST00000576932.1,ENST00000348161.4,ENST00000570965.1,ENST00000445275.2	chr17	52991179:52991234:52991999:52992104:52993106:52993208,	52992000	52992104	52992095	52992095	Frame_Shift_Del	C	-	p.V198fs
LIHC	TCGA-DD-A3A0-01	MMD	ENST00000262065.3	chr17	53469973:53471895:53478829:53478899:53481127:53481229,	53478830	53478899	53478876	53478876	Frame_Shift_Del	A	-	p.F157fs
LIHC	TCGA-DD-A3A0-01	SCPEP1	ENST00000575423.1,ENST00000576154.1,ENST00000262288.3,ENST00000570479.1,ENST00000573239.1	chr17	55078215:55078353:55079378:55079542:55083533:55083947,	55079379	55079542	55079508	55079508	Frame_Shift_Del	T	-	p.L421fs
LIHC	TCGA-DD-A3A0-01	AKAP1	ENST00000571629.1,ENST00000539273.1,ENST00000481416.1,ENST00000573326.1,ENST00000572557.1,ENST00000337714.3	chr17	55189165:55189285:55189851:55189979:55191819:55191997,	55189852	55189979	55189932	55189932	Frame_Shift_Del	C	-	p.P687fs
LIHC	TCGA-DD-A3A0-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060535	56060535	Frame_Shift_Del	C	-	p.D76fs
LIHC	TCGA-DD-A3A0-01	MPO	ENST00000225275.3,ENST00000340482.3	chr17	56349015:56349253:56350108:56350279:56350774:56350853,	56350109	56350279	56350182	56350182	Frame_Shift_Del	A	-	p.F605fs
LIHC	TCGA-DD-A3A0-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492759	56492759	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-DD-A3A0-01	TEX14	ENST00000582740.1,ENST00000389934.3,ENST00000349033.5,ENST00000240361.8	chr17	56643112:56643185:56646552:56646621:56647745:56647845,	56646553	56646621	56646617	56646617	Frame_Shift_Del	T	-	p.E1314fs
LIHC	TCGA-DD-A3A0-01	TEX14	ENST00000582740.1,ENST00000389934.3,ENST00000349033.5,ENST00000240361.8	chr17	56649281:56649487:56650541:56650669:56651547:56651610,	56650542	56650669	56650612	56650612	Frame_Shift_Del	A	-	p.F1187fs
LIHC	TCGA-DD-A3A0-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57094656:57094785:57105775:57106084:57109256:57109451,	57105776	57106084	57105995	57105995	Frame_Shift_Del	T	-	p.T558fs
LIHC	TCGA-DD-A3A0-01	PRR11	ENST00000578777.1,ENST00000578542.1,ENST00000580177.1,ENST00000262293.4	chr17	57262414:57262565:57262800:57262923:57270852:57271047,	57262801	57262923	57262866	57262866	Frame_Shift_Del	A	-	p.V115fs
LIHC	TCGA-DD-A3A0-01	GDPD1	ENST00000581140.1,ENST00000579020.1,ENST00000581276.1,ENST00000284116.4	chr17	57326100:57326146:57334482:57334601:57335111:57335201,	57334483	57334601	57334515	57334515	Frame_Shift_Del	C	-	p.P134fs
LIHC	TCGA-DD-A3A0-01	GDPD1	ENST00000581140.1,ENST00000579020.1,ENST00000581276.1,ENST00000284116.4	chr17	57326100:57326146:57334482:57334601:57335111:57335201,	57334483	57334601	57334531	57334531	Frame_Shift_Del	T	-	p.V139fs
LIHC	TCGA-DD-A3A0-01	GDPD1	ENST00000581140.1,ENST00000578026.1,ENST00000581276.1,ENST00000284116.4	chr17	57335111:57335201:57344401:57344535:57348296:57348356,	57344402	57344535	57344486	57344486	Frame_Shift_Del	C	-	p.P221fs
LIHC	TCGA-DD-A3A0-01	DHX40	ENST00000577549.1,ENST00000425628.3,ENST00000251241.4,ENST00000451169.2	chr17	57682475:57682545:57682806:57683035:57684393:57684619,	57682807	57683035	57682907	57682907	Frame_Shift_Del	G	-	p.W643fs
LIHC	TCGA-DD-A3A0-01	VMP1	ENST00000539763.1,ENST00000262291.4,ENST00000587945.1,ENST00000536180.1	chr17	57812698:57812834:57842331:57842499:57851114:57851165,57816197:57816308:57842331:57842499:57851114:57851165,	57842332	57842499	57842385	57842385	Frame_Shift_Del	T	-	p.N156fs
LIHC	TCGA-DD-A3A0-01	RPS6KB1	ENST00000393021.3,ENST00000443572.2,ENST00000472940.1,ENST00000225577.4,ENST00000406116.3	chr17	58011794:58011885:58012553:58012661:58013575:58013638,	58012554	58012661	58012593	58012593	Frame_Shift_Del	A	-	p.K304fs
LIHC	TCGA-DD-A3A0-01	HEATR6	ENST00000184956.6,ENST00000585976.1	chr17	58143569:58143747:58144794:58145093:58147071:58147209,	58144795	58145093	58144896	58144896	Frame_Shift_Del	T	-	p.K379fs
LIHC	TCGA-DD-A3A0-01	USP32	ENST00000590133.1,ENST00000592339.1,ENST00000300896.4	chr17	58286777:58286904:58288373:58288479:58288736:58288875,	58288374	58288479	58288415	58288415	Frame_Shift_Del	A	-	p.W795fs
LIHC	TCGA-DD-A3A0-01	USP32	ENST00000590133.1,ENST00000300896.4,ENST00000393003.3	chr17	58348710:58348842:58365883:58366043:58372043:58372162,	58365884	58366043	58365984	58365984	Frame_Shift_Del	A	-	p.F157fs
LIHC	TCGA-DD-A3A0-01	APPBP2	ENST00000083182.3,ENST00000589341.1	chr17	58533656:58533742:58538023:58538148:58539170:58539276,	58538024	58538148	58538108	58538108	Frame_Shift_Del	T	-	p.N326fs
LIHC	TCGA-DD-A3A0-01	BRIP1	ENST00000577598.1,ENST00000259008.2,ENST00000579028.1	chr17	59853761:59853923:59857621:59857762:59858200:59858366,	59857622	59857762	59857722	59857722	Frame_Shift_Del	A	-	p.L612fs
LIHC	TCGA-DD-A3A0-01	BRIP1	ENST00000577598.1,ENST00000259008.2	chr17	59878613:59878835:59885827:59886118:59924461:59924581,	59885828	59886118	59886002	59886002	Frame_Shift_Del	A	-	p.F248fs
LIHC	TCGA-DD-A3A0-01	INTS2	ENST00000444766.3,ENST00000251334.6	chr17	59971125:59971260:59972675:59972744:59974829:59974944,	59972676	59972744	59972685	59972685	Frame_Shift_Del	A	-	p.F526fs
LIHC	TCGA-DD-A3A0-01	MED13	ENST00000397786.2	chr17	60032742:60032928:60033040:60033199:60033699:60033842,	60033041	60033199	60033152	60033152	Frame_Shift_Del	T	-	p.R1891fs
LIHC	TCGA-DD-A3A0-01	MED13	ENST00000397786.2	chr17	60033699:60033842:60038227:60038451:60038948:60039140,	60038228	60038451	60038264	60038264	Frame_Shift_Del	A	-	p.L1815fs
LIHC	TCGA-DD-A3A0-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60501579:60501671:60503659:60504015:60505148:60505198,	60503660	60504015	60503714	60503714	Frame_Shift_Del	A	-	p.E86fs
LIHC	TCGA-DD-A3A0-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61735153:61735267:61744299:61744420:61759125:61759259,	61744300	61744420	61744387	61744387	Frame_Shift_Del	C	-	p.P189fs
LIHC	TCGA-DD-A3A0-01	STRADA	ENST00000577375.1,ENST00000582030.1,ENST00000245865.5,ENST00000580338.1,ENST00000579340.1,ENST00000375840.4	chr17	61790765:61790887:61791365:61791468:61803997:61804055,	61791366	61791468	61791427	61791427	Frame_Shift_Del	T	-	p.K18fs
LIHC	TCGA-DD-A3A0-01	CCDC47	ENST00000403162.3,ENST00000225726.5,ENST00000582331.2,ENST00000582252.1	chr17	61830139:61830159:61831792:61831878:61833599:61833710,	61831793	61831878	61831827	61831827	Frame_Shift_Del	A	-	p.S334fs
LIHC	TCGA-DD-A3A0-01	DDX42	ENST00000578681.1	chr17	61851566:61851736:61864393:61864630:61869771:61869864,61852467:61852538:61864393:61864630:61869771:61869864,	61864394	61864630	61864590	61864590	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A3A0-01	DDX42	ENST00000389924.2,ENST00000359353.5,ENST00000578681.1,ENST00000457800.2,ENST00000584010.1,ENST00000583590.1,ENST00000577940.2	chr17	61883894:61884014:61885083:61885260:61886179:61886308,	61885084	61885260	61885129	61885129	Frame_Shift_Del	A	-	p.K298fs
LIHC	TCGA-DD-A3A0-01	SMARCD2	ENST00000323347.10,ENST00000225742.9,ENST00000448276.2	chr17	61910428:61910530:61910657:61910780:61910946:61911082,	61910658	61910780	61910705	61910705	Frame_Shift_Del	G	-	p.Q465fs
LIHC	TCGA-DD-A3A0-01	ERN1	ENST00000433197.3	chr17	62144030:62144292:62145549:62145651:62149340:62149456,	62145550	62145651	62145622	62145622	Frame_Shift_Del	T	-	p.T170fs
LIHC	TCGA-DD-A3A0-01	POLG2	ENST00000577506.1	chr17	62476464:62476506:62479035:62479091:62481844:62481911,	62479036	62479091	62479054	62479054	Frame_Shift_Del	G	-	p.P391fs
LIHC	TCGA-DD-A3A0-01	POLG2	ENST00000582501.1,ENST00000539111.2	chr17	62476464:62476506:62479035:62479116:62481844:62481911,	62479036	62479116	62479054	62479054	Frame_Shift_Del	G	-	p.P391fs
LIHC	TCGA-DD-A3A0-01	DDX5	ENST00000225792.5,ENST00000581230.1,ENST00000577922.1,ENST00000584279.1,ENST00000578400.1,ENST00000450599.2	chr17	62500390:62500436:62500794:62500960:62502193:62502377,	62500795	62500960	62500874	62500874	Frame_Shift_Del	T	-	p.K45fs
LIHC	TCGA-DD-A3A0-01	DDX5	ENST00000585060.1	chr17	62500390:62500436:62500794:62500998:62502193:62502407,	62500795	62500998	62500874	62500874	Frame_Shift_Del	T	-	p.K45fs
LIHC	TCGA-DD-A3A0-01	SMURF2	ENST00000582081.1,ENST00000585301.1,ENST00000578386.1,ENST00000262435.9	chr17	62557617:62557721:62558888:62559084:62567915:62568074,	62558889	62559084	62558951	62558951	Frame_Shift_Del	A	-	p.S384fs
LIHC	TCGA-DD-A3A0-01	LRRC37A3	ENST00000584306.1	chr17	62888646:62888718:62890766:62893772:62894479:62894577,	62890767	62893772	62892310	62892310	Frame_Shift_Del	A	-	p.S356fs
LIHC	TCGA-DD-A3A0-01	LRRC37A3	ENST00000584306.1	chr17	62888646:62888718:62890766:62893772:62894479:62894577,	62890767	62893772	62892978	62892978	Frame_Shift_Del	A	-	p.L133fs
LIHC	TCGA-DD-A3A0-01	LRRC37A3	ENST00000584306.1	chr17	62888646:62888718:62890766:62893772:62894479:62894577,	62890767	62893772	62892982	62892982	Frame_Shift_Del	C	-	p.D132fs
LIHC	TCGA-DD-A3A0-01	CEP112	ENST00000541355.1,ENST00000535342.2,ENST00000583358.1,ENST00000392769.2,ENST00000537949.1	chr17	64025240:64025370:64025986:64026141:64049853:64049997,	64025987	64026141	64026046	64026046	Frame_Shift_Del	T	-	p.K438fs
LIHC	TCGA-DD-A3A0-01	CEP112	ENST00000535342.2,ENST00000583358.1,ENST00000392769.2	chr17	64066032:64066119:64125863:64125941:64128787:64128881,64092702:64092750:64125863:64125941:64128787:64128881,	64125864	64125941	64125910	64125910	Frame_Shift_Del	A	-	p.L199fs
LIHC	TCGA-DD-A3A0-01	APOH	ENST00000205948.6	chr17	64208156:64208306:64210570:64210768:64212905:64213082,	64210571	64210768	64210743	64210743	Frame_Shift_Del	T	-	p.K270fs
LIHC	TCGA-DD-A3A0-01	APOH	ENST00000577982.1,ENST00000205948.6,ENST00000581797.1	chr17	64219815:64219892:64222145:64222242:64224137:64224278,	64222146	64222242	64222159	64222159	Frame_Shift_Del	A	-	p.S109fs
LIHC	TCGA-DD-A3A0-01	PRKCA	ENST00000578063.1,ENST00000413366.3	chr17	64302213:64302245:64492318:64492401:64637472:64637584,	64492319	64492401	64492362	64492362	Frame_Shift_Del	T	-	p.T83fs
LIHC	TCGA-DD-A3A0-01	PRKCA	ENST00000284384.6,ENST00000413366.3	chr17	64728805:64728943:64731606:64731780:64734881:64734973,	64731607	64731780	64731739	64731739	Frame_Shift_Del	C	-	p.P398fs
LIHC	TCGA-DD-A3A0-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584008.1	chr17	65338301:65338379:65340721:65340896:65341860:65341973,	65340722	65340896	65340757	65340757	Frame_Shift_Del	T	-	p.R350fs
LIHC	TCGA-DD-A3A0-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584008.1	chr17	65338301:65338379:65340721:65340896:65341860:65341973,	65340722	65340896	65340878	65340878	Frame_Shift_Del	A	-	p.F309fs
LIHC	TCGA-DD-A3A0-01	PSMD12	ENST00000578015.1,ENST00000584289.1	chr17	65353418:65353547:65353634:65353694:65362527:65362635,	65353635	65353694	65353648	65353648	Frame_Shift_Del	T	-	p.K52fs
LIHC	TCGA-DD-A3A0-01	PSMD12	ENST00000578015.1,ENST00000584289.1	chr17	65353418:65353547:65353634:65353694:65362527:65362635,	65353635	65353694	65353664	65353664	Frame_Shift_Del	G	-	p.L48fs
LIHC	TCGA-DD-A3A0-01	PITPNC1	ENST00000581322.1,ENST00000335257.6,ENST00000299954.9	chr17	65374270:65374318:65528917:65529066:65548372:65548461,	65528918	65529066	65528973	65528973	Frame_Shift_Del	G	-	p.R35fs
LIHC	TCGA-DD-A3A0-01	NOL11	ENST00000253247.4,ENST00000580833.1	chr17	65717565:65717642:65718695:65718753:65720164:65720309,	65718696	65718753	65718731	65718731	Frame_Shift_Del	T	-	p.V166fs
LIHC	TCGA-DD-A3A0-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65899904:65900034:65900817:65900956:65905697:65905877,	65900818	65900956	65900881	65900881	Frame_Shift_Del	A	-	p.K1039fs
LIHC	TCGA-DD-A3A0-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65900817:65900956:65905697:65905877:65906992:65909303,	65905698	65905877	65905700	65905700	Frame_Shift_Del	A	-	p.K1065fs
LIHC	TCGA-DD-A3A0-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000582467.1,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65916215:65916259:65918955:65919106:65920662:65920705,	65918956	65919106	65919082	65919082	Frame_Shift_Del	G	-	p.W2021fs
LIHC	TCGA-DD-A3A0-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000582467.1,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65918955:65919106:65920662:65920705:65924470:65924717,	65920663	65920705	65920674	65920674	Frame_Shift_Del	A	-	p.E2033fs
LIHC	TCGA-DD-A3A0-01	FAM20A	ENST00000590873.1	chr17	66535477:66535537:66536025:66536107:66539769:66539810,	66536026	66536107	66536063	66536063	Frame_Shift_Del	C	-	p.D423fs
LIHC	TCGA-DD-A3A0-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67186498:67186618:67187316:67187456:67188703:67188794,	67187317	67187456	67187360	67187360	Frame_Shift_Del	T	-	p.K656fs
LIHC	TCGA-DD-A3A0-01	ABCA5	ENST00000392676.3,ENST00000586811.1,ENST00000392677.2,ENST00000591234.1,ENST00000586995.1,ENST00000588877.1	chr17	67251683:67251775:67251873:67251991:67252297:67252424,	67251874	67251991	67251935	67251935	Frame_Shift_Del	A	-	p.F1305fs
LIHC	TCGA-DD-A3A0-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71231737	71231737	Frame_Shift_Del	A	-	p.Q39fs
LIHC	TCGA-DD-A3A0-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71231990	71231990	Frame_Shift_Del	A	-	p.L123fs
LIHC	TCGA-DD-A3A0-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232339	71232339	Frame_Shift_Del	A	-	p.K240fs
LIHC	TCGA-DD-A3A0-01	RPL38	ENST00000533498.1,ENST00000439590.2,ENST00000311111.6	chr17	72200268:72200329:72205325:72205448:72205942:72206019,	72205326	72205448	72205442	72205442	Frame_Shift_Del	C	-	p.P62fs
LIHC	TCGA-DD-A3A0-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436717	72436717	Frame_Shift_Del	A	-	p.K313fs
LIHC	TCGA-DD-A3A0-01	SLC9A3R1	ENST00000262613.5	chr17	72744790:72745426:72758150:72758312:72759505:72759538,	72758151	72758312	72758186	72758186	Frame_Shift_Del	G	-	p.K159fs
LIHC	TCGA-DD-A3A0-01	SLC9A3R1	ENST00000581356.1	chr17	72759566:72759659:72764285:72764375:72764606:72764698,	72764286	72764375	72764327	72764327	Frame_Shift_Del	C	-	p.S280fs
LIHC	TCGA-DD-A3A0-01	GRIN2C	ENST00000293190.5,ENST00000347612.4	chr17	72846694:72846906:72847715:72847830:72848151:72848750,	72847716	72847830	72847721	72847721	Frame_Shift_Del	C	-	p.E370fs
LIHC	TCGA-DD-A3A0-01	GRIN2C	ENST00000347612.4	chr17	72848212:72848750:72850832:72851246:72856571:72856658,	72850833	72851246	72851075	72851075	Frame_Shift_Del	G	-	p.Q53fs
LIHC	TCGA-DD-A3A0-01	FDXR	ENST00000544854.1,ENST00000455107.2,ENST00000577509.1,ENST00000578473.1,ENST00000420580.2,ENST00000413947.2,ENST00000582944.1,ENST00000293195.5,ENST00000442102.2,ENST00000581530.1,ENST00000582710.1,ENST00000579482.1	chr17	72860397:72860469:72860601:72860686:72860945:72861051,	72860602	72860686	72860643	72860643	Frame_Shift_Del	A	-	p.L210fs
LIHC	TCGA-DD-A3A0-01	HID1	ENST00000425042.2,ENST00000532395.1,ENST00000534480.1	chr17	72947550:72947728:72947999:72948158:72948363:72948455,	72948000	72948158	72948156	72948156	Frame_Shift_Del	C	-	p.G716fs
LIHC	TCGA-DD-A3A0-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000584118.1,ENST00000584207.1,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73089683:73089930:73094132:73094276:73096101:73096277,	73094133	73094276	73094135	73094135	Frame_Shift_Del	C	-	p.P68fs
LIHC	TCGA-DD-A3A0-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73094132:73094276:73096101:73096911:73100064:73100275,	73096102	73096911	73096234	73096234	Frame_Shift_Del	C	-	p.S159fs
LIHC	TCGA-DD-A3A0-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73094132:73094276:73096101:73096911:73100064:73100275,	73096102	73096911	73096579	73096579	Frame_Shift_Del	C	-	p.A274fs
LIHC	TCGA-DD-A3A0-01	NUP85	ENST00000449421.2,ENST00000541827.1,ENST00000579324.1	chr17	73201814:73201889:73205917:73206080:73208086:73208157,	73205918	73206080	73206030	73206030	Frame_Shift_Del	G	-	p.L80fs
LIHC	TCGA-DD-A3A0-01	NUP85	ENST00000581104.1,ENST00000447371.2	chr17	73209170:73209214:73211848:73211918:73214279:73214401,73209170:73209214:73211848:73211918:73221197:73221332,	73211849	73211918	73211898	73211898	Frame_Shift_Del	T	-	p.F25fs
LIHC	TCGA-DD-A3A0-01	TSEN54	ENST00000333213.6	chr17	73517489:73517591:73517785:73518414:73519355:73519368,	73517786	73518414	73517827	73517827	Frame_Shift_Del	A	-	p.Q222fs
LIHC	TCGA-DD-A3A0-01	RECQL5	ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73624751:73624842:73625013:73625555:73625787:73625922,	73625014	73625555	73625547	73625547	Frame_Shift_Del	G	-	p.P652fs
LIHC	TCGA-DD-A3A0-01	SAP30BP	ENST00000584240.1,ENST00000355423.3,ENST00000583536.1,ENST00000581207.1,ENST00000579877.1,ENST00000580322.1,ENST00000293208.9,ENST00000583063.1,ENST00000580601.1,ENST00000584667.1	chr17	73698559:73698651:73699390:73699451:73699887:73699939,	73699391	73699451	73699423	73699423	Frame_Shift_Del	T	-	p.I174fs
LIHC	TCGA-DD-A3A0-01	ACOX1	ENST00000293217.5,ENST00000572047.1,ENST00000537812.1,ENST00000591857.1	chr17	73953595:73953647:73956295:73956456:73969705:73969866,73953595:73953647:73956295:73956456:73974614:73974774,	73956296	73956456	73956348	73956348	Frame_Shift_Del	G	-	p.P88fs
LIHC	TCGA-DD-A3A0-01	CDK3	ENST00000425876.2,ENST00000448471.1	chr17	73998591:73998693:73999275:73999479:74001378:74002078,	73999276	73999479	73999294	73999294	Frame_Shift_Del	T	-	p.F203fs
LIHC	TCGA-DD-A3A0-01	CDK3	ENST00000425876.2,ENST00000448471.1	chr17	73998591:73998693:73999275:73999479:74001378:74002078,	73999276	73999479	73999407	73999407	Frame_Shift_Del	C	-	p.F240fs
LIHC	TCGA-DD-A3A0-01	SRP68	ENST00000592704.1,ENST00000307877.2,ENST00000355113.5,ENST00000539137.1	chr17	74057255:74057300:74057572:74057655:74060056:74060103,	74057573	74057655	74057620	74057620	Frame_Shift_Del	A	-	p.F199fs
LIHC	TCGA-DD-A3A0-01	SRP68	ENST00000585539.1	chr17	74057255:74057300:74057572:74057734:74060056:74060103,	74057573	74057734	74057620	74057620	Frame_Shift_Del	A	-	p.F199fs
LIHC	TCGA-DD-A3A0-01	EXOC7	ENST00000357231.4,ENST00000411744.2,ENST00000467586.1,ENST00000589210.1,ENST00000467929.2,ENST00000607838.1,ENST00000332065.5,ENST00000465252.1,ENST00000335146.7	chr17	74079728:74079831:74080086:74080220:74080328:74080370,	74080087	74080220	74080130	74080130	Frame_Shift_Del	G	-	p.Q660fs
LIHC	TCGA-DD-A3A0-01	RNF157	ENST00000319945.6	chr17	74169782:74169871:74208444:74208563:74236233:74236382,	74208445	74208563	74208490	74208490	Frame_Shift_Del	A	-	p.F54fs
LIHC	TCGA-DD-A3A0-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74287422	74287422	Frame_Shift_Del	A	-	p.L963fs
LIHC	TCGA-DD-A3A0-01	UBE2O	ENST00000319380.7,ENST00000587127.1	chr17	74387836:74387894:74387990:74388194:74391805:74391942,	74387991	74388194	74388048	74388048	Frame_Shift_Del	G	-	p.P1031fs
LIHC	TCGA-DD-A3A0-01	RHBDF2	ENST00000389760.4,ENST00000587640.1,ENST00000591885.1,ENST00000313080.4	chr17	74472911:74473106:74473261:74473380:74473738:74473813,	74473262	74473380	74473282	74473282	Frame_Shift_Del	G	-	p.P300fs
LIHC	TCGA-DD-A3A0-01	ST6GALNAC2	ENST00000225276.5,ENST00000588120.1,ENST00000588920.1	chr17	74566991:74567005:74568718:74568857:74569276:74569381,74566660:74566750:74568718:74568857:74569276:74569381,	74568719	74568857	74568836	74568836	Frame_Shift_Del	T	-	p.K184fs
LIHC	TCGA-DD-A3A0-01	ST6GALNAC2	ENST00000225276.5,ENST00000586520.1,ENST00000588120.1	chr17	74568718:74568857:74569276:74569445:74570446:74570621,	74569277	74569445	74569373	74569373	Frame_Shift_Del	G	-	p.P146fs
LIHC	TCGA-DD-A3A0-01	ST6GALNAC2	ENST00000588005.1	chr17	74568718:74568857:74569276:74569381:74570446:74570621,	74569277	74569381	74569373	74569373	Frame_Shift_Del	G	-	p.P146fs
LIHC	TCGA-DD-A3A0-01	MXRA7	ENST00000585519.1,ENST00000588114.1,ENST00000449428.2,ENST00000592148.1	chr17	74668632:74673784:74681153:74681247:74684194:74684254,74676858:74676961:74681153:74681247:74684194:74684254,	74681154	74681247	74681205	74681205	Frame_Shift_Del	C	-	p.G150fs
LIHC	TCGA-DD-A3A0-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74899384:74899458:74900333:74900504:74901250:74901415,	74900334	74900504	74900379	74900379	Frame_Shift_Del	G	-	p.G189fs
LIHC	TCGA-DD-A3A0-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189574	75189574	Frame_Shift_Del	T	-	p.G139fs
LIHC	TCGA-DD-A3A0-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189591	75189591	Frame_Shift_Del	A	-	p.E145fs
LIHC	TCGA-DD-A3A0-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189605	75189605	Frame_Shift_Del	A	-	p.K150fs
LIHC	TCGA-DD-A3A0-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189626	75189626	Frame_Shift_Del	A	-	p.K158fs
LIHC	TCGA-DD-A3A0-01	TNRC6C	ENST00000301624.4,ENST00000541771.1,ENST00000544502.1,ENST00000588847.1,ENST00000335749.4,ENST00000588061.1	chr17	76073265:76073415:76075475:76075622:76079127:76079247,	76075476	76075622	76075597	76075597	Frame_Shift_Del	A	-	p.Q1108fs
LIHC	TCGA-DD-A3A0-01	TMC6	ENST00000322914.3,ENST00000593044.1,ENST00000591436.1,ENST00000322933.4,ENST00000392467.3,ENST00000590602.1	chr17	76109628:76109705:76113349:76113428:76113548:76113725,	76113350	76113428	76113393	76113393	Frame_Shift_Del	C	-	p.G745fs
LIHC	TCGA-DD-A3A0-01	TMC6	ENST00000589271.1	chr17	76122604:76122729:76122857:76123055:76124692:76124711,76122604:76122729:76122857:76123055:76124739:76124839,	76122858	76123055	76122870	76122870	Frame_Shift_Del	G	-	p.P15fs
LIHC	TCGA-DD-A3A0-01	TMC6	ENST00000593044.1	chr17	76122604:76122729:76122857:76122987:76124692:76124711,76122604:76122729:76122857:76122987:76124739:76124839,	76122858	76122987	76122870	76122870	Frame_Shift_Del	G	-	p.P15fs
LIHC	TCGA-DD-A3A0-01	TMC8	ENST00000589691.1,ENST00000318430.5	chr17	76134085:76134269:76134429:76134560:76134654:76134705,	76134430	76134560	76134516	76134516	Frame_Shift_Del	G	-	p.L540fs
LIHC	TCGA-DD-A3A0-01	SYNGR2	ENST00000225777.3,ENST00000585591.1,ENST00000590201.1	chr17	76164698:76164796:76167590:76167730:76167819:76168023,76166897:76167135:76167590:76167730:76167819:76167931,	76167591	76167730	76167673	76167673	Frame_Shift_Del	G	-	p.V140fs
LIHC	TCGA-DD-A3A0-01	BIRC5	ENST00000590925.2,ENST00000350051.3	chr17	76210465:76210508:76210760:76210870:76212744:76212862,	76210761	76210870	76210865	76210865	Frame_Shift_Del	C	-	p.D72fs
LIHC	TCGA-DD-A3A0-01	PGS1	ENST00000588169.1,ENST00000329897.7	chr17	76374777:76374889:76388594:76388746:76392388:76392466,76374777:76374889:76388594:76388746:76394332:76394349,	76388595	76388746	76388703	76388703	Frame_Shift_Del	T	-	p.V97fs
LIHC	TCGA-DD-A3A0-01	PGS1	ENST00000585521.2,ENST00000592043.1	chr17	76374777:76374889:76388556:76388746:76394332:76394349,76374777:76374889:76388556:76388746:76392388:76392466,	76388557	76388746	76388703	76388703	Frame_Shift_Del	T	-	p.V97fs
LIHC	TCGA-DD-A3A0-01	PGS1	ENST00000589426.1	chr17	76396911:76396936:76399648:76400170:76410959:76411108,76396911:76396936:76399648:76400170:76411032:76411108,	76399649	76400170	76399943	76399943	Frame_Shift_Del	C	-	p.T392fs
LIHC	TCGA-DD-A3A0-01	DNAH17	ENST00000585328.1,ENST00000591369.1,ENST00000590227.1	chr17	76423008:76423189:76424605:76424788:76425201:76425321,	76424606	76424788	76424625	76424625	Frame_Shift_Del	C	-	p.G4184fs
LIHC	TCGA-DD-A3A0-01	DNAH17	ENST00000589793.1,ENST00000389840.5,ENST00000585328.1	chr17	76556821:76557017:76557796:76558062:76562695:76562812,	76557797	76558062	76557953	76557953	Frame_Shift_Del	T	-	p.K560fs
LIHC	TCGA-DD-A3A0-01	CYTH1	ENST00000591455.1	chr17	76688498:76688575:76694350:76694462:76694901:76695050,	76694351	76694462	76694440	76694440	Frame_Shift_Del	T	-	p.N182fs
LIHC	TCGA-DD-A3A0-01	ENPP7	ENST00000576512.1,ENST00000328313.5	chr17	77709339:77709468:77710839:77711059:77711714:77711861,	77710840	77711059	77710876	77710876	Frame_Shift_Del	T	-	p.F355fs
LIHC	TCGA-DD-A3A0-01	GAA	ENST00000577106.1	chr17	78075609:78075689:78078353:78078931:78079547:78079627,78075609:78075724:78078353:78078931:78079547:78079627,	78078354	78078931	78078582	78078582	Frame_Shift_Del	G	-	p.R66fs
LIHC	TCGA-DD-A3A0-01	GAA	ENST00000572080.1,ENST00000302262.3,ENST00000390015.3	chr17	78086674:78086826:78087016:78087165:78090766:78090881,	78087017	78087165	78087133	78087133	Frame_Shift_Del	G	-	p.A719fs
LIHC	TCGA-DD-A3A0-01	CARD14	ENST00000344227.2,ENST00000573882.1	chr17	78177620:78177684:78178025:78178140:78178833:78179004,	78178026	78178140	78178035	78178035	Frame_Shift_Del	G	-	p.G766fs
LIHC	TCGA-DD-A3A0-01	CARD14	ENST00000575500.1	chr17	78177620:78177684:78178025:78178150:78178833:78179004,	78178026	78178150	78178035	78178035	Frame_Shift_Del	G	-	p.G766fs
LIHC	TCGA-DD-A3A0-01	SLC26A11	ENST00000571602.1	chr17	78195554:78195593:78196453:78196646:78197050:78197071,78195554:78195593:78196453:78196646:78196978:78197054,	78196454	78196646	78196630	78196630	Frame_Shift_Del	G	-	p.M137fs
LIHC	TCGA-DD-A3A0-01	RNF213	ENST00000319921.4,ENST00000582970.1,ENST00000456466.1	chr17	78234668:78234701:78237372:78237577:78247039:78247203,	78237373	78237577	78237521	78237521	Frame_Shift_Del	C	-	p.T14fs
LIHC	TCGA-DD-A3A0-01	RNF213	ENST00000508628.2,ENST00000582970.1	chr17	78311632:78311797:78313000:78314156:78316931:78317125,	78313001	78314156	78314030	78314030	Frame_Shift_Del	C	-	p.P1955fs
LIHC	TCGA-DD-A3A0-01	RNF213	ENST00000427003.3,ENST00000336301.6,ENST00000508628.2,ENST00000411702.3,ENST00000582970.1,ENST00000560083.1	chr17	78363627:78363717:78363811:78363996:78367144:78369053,	78363812	78363996	78363821	78363821	Frame_Shift_Del	G	-	p.G5099fs
LIHC	TCGA-DD-A3A0-01	RNF213	ENST00000427003.3,ENST00000336301.6,ENST00000508628.2,ENST00000411702.3,ENST00000582970.1,ENST00000560083.1	chr17	78363627:78363717:78363811:78363996:78367144:78369053,	78363812	78363996	78363955	78363955	Frame_Shift_Del	C	-	p.N5143fs
LIHC	TCGA-DD-A3A0-01	RPTOR	ENST00000575542.1,ENST00000306801.3,ENST00000544334.2	chr17	78897289:78897473:78899169:78899280:78914295:78914401,	78899170	78899280	78899232	78899232	Frame_Shift_Del	G	-	p.T957fs
LIHC	TCGA-DD-A3A0-01	AATK	ENST00000374792.2	chr17	79104860:79105005:79108167:79108301:79139737:79139817,	79108168	79108301	79108292	79108292	Frame_Shift_Del	G	-	p.P22fs
LIHC	TCGA-DD-A3A0-01	SLC38A10	ENST00000288439.5	chr17	79258649:79258695:79263490:79263608:79268622:79268714,	79263491	79263608	79263590	79263590	Frame_Shift_Del	C	-	p.A40fs
LIHC	TCGA-DD-A3A0-01	NPLOC4	ENST00000331134.6,ENST00000374747.5,ENST00000574344.1	chr17	79573716:79573840:79575753:79575848:79580343:79580373,79573716:79573840:79575753:79575848:79577235:79577284,	79575754	79575848	79575826	79575826	Frame_Shift_Del	T	-	p.N153fs
LIHC	TCGA-DD-A3A0-01	HGS	ENST00000575058.1,ENST00000329138.4	chr17	79660704:79660782:79660899:79660995:79661844:79661883,	79660900	79660995	79660963	79660963	Frame_Shift_Del	C	-	p.P303fs
LIHC	TCGA-DD-A3A0-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79803019:79803106:79803436:79803618:79803746:79803867,	79803437	79803618	79803612	79803612	Frame_Shift_Del	G	-	p.P395fs
LIHC	TCGA-DD-A3A0-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79803535:79803618:79803746:79803867:79804304:79804383,	79803747	79803867	79803764	79803764	Frame_Shift_Del	T	-	p.N387fs
LIHC	TCGA-DD-A3A0-01	P4HB	ENST00000439918.2,ENST00000574007.1,ENST00000575069.1,ENST00000477607.2,ENST00000478034.1,ENST00000573778.2,ENST00000576380.1,ENST00000331483.4,ENST00000472244.1	chr17	79804907:79804948:79805118:79805223:79813017:79813155,	79805119	79805223	79805221	79805221	Frame_Shift_Del	A	-	p.F209fs
LIHC	TCGA-DD-A3A0-01	PYCR1	ENST00000577756.1	chr17	79892321:79892365:79892528:79892621:79892801:79892858,79891231:79891252:79892528:79892621:79892801:79892858,	79892529	79892621	79892587	79892587	Frame_Shift_Del	C	-	p.G192fs
LIHC	TCGA-DD-A3A0-01	ASPSCR1	ENST00000344865.6,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000581484.1,ENST00000306739.4	chr17	79943382:79943483:79952696:79952754:79953867:79953941,	79952697	79952754	79952719	79952719	Frame_Shift_Del	G	-	p.G133fs
LIHC	TCGA-DD-A3A0-01	ASPSCR1	ENST00000344865.6,ENST00000582355.2,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000306739.4	chr17	79953867:79953941:79954295:79954722:79966912:79966915,	79954296	79954722	79954544	79954544	Frame_Shift_Del	T	-	p.L252fs
LIHC	TCGA-DD-A3A0-01	ASPSCR1	ENST00000584454.1	chr17	79967361:79967443:79968677:79968744:79969418:79969481,79967807:79967928:79968677:79968744:79969418:79969481,	79968678	79968744	79968698	79968698	Frame_Shift_Del	C	-	p.F397fs
LIHC	TCGA-DD-A3A0-01	GPS1	ENST00000578552.1,ENST00000584460.1,ENST00000355130.2,ENST00000320548.4,ENST00000306823.6,ENST00000392358.2	chr17	80014161:80014267:80014345:80014426:80014504:80014642,	80014346	80014426	80014374	80014374	Frame_Shift_Del	C	-	p.A395fs
LIHC	TCGA-DD-A3A0-01	FASN	ENST00000578424.1,ENST00000306749.2,ENST00000580382.1	chr17	80037406:80037484:80038015:80038114:80038245:80038411,	80038016	80038114	80038101	80038101	Frame_Shift_Del	T	-	p.K2354fs
LIHC	TCGA-DD-A3A0-01	FASN	ENST00000579758.1,ENST00000306749.2	chr17	80040198:80040290:80040402:80040554:80040789:80040991,	80040403	80040554	80040515	80040515	Frame_Shift_Del	C	-	p.G1936fs
LIHC	TCGA-DD-A3A0-01	FASN	ENST00000306749.2	chr17	80046844:80047048:80047125:80047260:80047507:80047602,	80047126	80047260	80047148	80047148	Frame_Shift_Del	G	-	p.P693fs
LIHC	TCGA-DD-A3A0-01	SLC16A3	ENST00000584781.1	chr17	80194004:80194107:80194604:80194720:80195013:80195053,	80194605	80194720	80194660	80194660	Frame_Shift_Del	G	-	p.V93fs
LIHC	TCGA-DD-A3A0-01	SLC16A3	ENST00000583237.1,ENST00000582946.1,ENST00000392339.1,ENST00000580189.1,ENST00000392341.1,ENST00000584689.1,ENST00000581287.1,ENST00000582743.1,ENST00000580098.1,ENST00000578522.1,ENST00000577650.1	chr17	80194004:80194107:80194604:80194748:80195013:80195053,	80194605	80194748	80194660	80194660	Frame_Shift_Del	G	-	p.V93fs
LIHC	TCGA-DD-A3A0-01	NARF	ENST00000577410.1,ENST00000582907.1,ENST00000412079.2,ENST00000581202.1,ENST00000309794.11,ENST00000577812.1,ENST00000457415.3,ENST00000579198.1,ENST00000390006.4,ENST00000584411.1,ENST00000581743.1,ENST00000374611.5,ENST00000580296.1,ENST00000577432.1,ENST00000581795.1	chr17	80417875:80417948:80422162:80422306:80426639:80426663,	80422163	80422306	80422199	80422199	Frame_Shift_Del	T	-	p.F49fs
LIHC	TCGA-DD-A3A0-01	FOXK2	ENST00000473637.2,ENST00000531030.1,ENST00000526383.2,ENST00000570585.1,ENST00000335255.5	chr17	80521229:80521424:80525929:80526077:80529599:80529746,	80525930	80526077	80526040	80526040	Frame_Shift_Del	A	-	p.E242fs
LIHC	TCGA-DD-A3A0-01	FOXK2	ENST00000473637.2,ENST00000531030.1,ENST00000526383.2,ENST00000335255.5	chr17	80525929:80526077:80529599:80529746:80540616:80540790,	80529600	80529746	80529705	80529705	Frame_Shift_Del	A	-	p.K290fs
LIHC	TCGA-DD-A3A0-01	FOXK2	ENST00000473637.2,ENST00000335255.5	chr17	80541888:80542064:80543779:80544076:80544938:80545148,	80543780	80544076	80544026	80544026	Frame_Shift_Del	C	-	p.A509fs
LIHC	TCGA-DD-A3A0-01	WDR45B	ENST00000571817.1,ENST00000574828.1,ENST00000572583.1	chr17	80588796:80588898:80601824:80601899:80606149:80606194,	80601825	80601899	80601835	80601835	Frame_Shift_Del	T	-	p.K44fs
LIHC	TCGA-DD-A3A0-01	FN3K	ENST00000570734.1,ENST00000300784.7	chr17	80698638:80698730:80699186:80699269:80706730:80706853,	80699187	80699269	80699263	80699263	Frame_Shift_Del	C	-	p.I154fs
LIHC	TCGA-DD-A3A0-01	B3GNTL1	ENST00000573363.1,ENST00000572977.1,ENST00000576599.1,ENST00000320865.3	chr17	80901697:80901925:80904754:80904859:80914570:80914645,	80904755	80904859	80904804	80904804	Frame_Shift_Del	C	-	p.G243fs
LIHC	TCGA-DD-A3A0-01	B3GNTL1	ENST00000573363.1,ENST00000572977.1,ENST00000576599.1,ENST00000320865.3	chr17	80901697:80901925:80904754:80904859:80914570:80914645,	80904755	80904859	80904846	80904846	Frame_Shift_Del	C	-	p.G229fs
LIHC	TCGA-DD-A3A0-01	COLEC12	ENST00000400256.3	chr18	333006:333143:334741:335230:346294:347341,	334742	335230	334758	334758	Frame_Shift_Del	T	-	p.P600fs
LIHC	TCGA-DD-A3A0-01	COLEC12	ENST00000400256.3,ENST00000582147.1	chr18	346294:347341:348064:348163:357399:357522,	348065	348163	348069	348069	Frame_Shift_Del	T	-	p.K92fs
LIHC	TCGA-DD-A3A0-01	ENOSF1	ENST00000584453.1	chr18	690566:690631:691067:691106:691203:691276,690566:690631:691067:691106:693881:693908,	691068	691106	691075	691075	Frame_Shift_Del	T	-	p.K94fs
LIHC	TCGA-DD-A3A0-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000577880.1	chr18	2718312:2718432:2722516:2722661:2724896:2724993,	2722517	2722661	2722602	2722602	Frame_Shift_Del	G	-	p.Q848fs
LIHC	TCGA-DD-A3A0-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000577880.1	chr18	2747519:2747645:2750040:2750120:2750347:2750505,	2750041	2750120	2750065	2750065	Frame_Shift_Del	A	-	p.K1318fs
LIHC	TCGA-DD-A3A0-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891912	2891912	Frame_Shift_Del	A	-	p.E596fs
LIHC	TCGA-DD-A3A0-01	EMILIN2	ENST00000254528.3,ENST00000583776.1,ENST00000308080.5	chr18	2908940:2908973:2909688:2909817:2913064:2913160,	2909689	2909817	2909793	2909793	Frame_Shift_Del	G	-	p.G934fs
LIHC	TCGA-DD-A3A0-01	MYOM1	ENST00000356443.4,ENST00000400569.3	chr18	3126698:3126895:3129229:3129517:3131372:3131494,	3129230	3129517	3129251	3129251	Frame_Shift_Del	G	-	p.L925fs
LIHC	TCGA-DD-A3A0-01	MYOM1	ENST00000356443.4,ENST00000400569.3	chr18	3126698:3126895:3129229:3129517:3131372:3131494,	3129230	3129517	3129514	3129514	Frame_Shift_Del	C	-	p.G838fs
LIHC	TCGA-DD-A3A0-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000400111.3,ENST00000545076.1,ENST00000427684.2,ENST00000542652.2	chr18	5393178:5393477:5395065:5395146:5395607:5395706,5394681:5394792:5395065:5395146:5395607:5395706,	5395066	5395146	5395133	5395133	Frame_Shift_Del	C	-	p.G1029fs
LIHC	TCGA-DD-A3A0-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000542146.1,ENST00000342933.3,ENST00000400111.3,ENST00000545076.1,ENST00000427684.2,ENST00000542652.2	chr18	5393178:5393477:5395065:5395146:5395607:5395706,5394681:5394792:5395065:5395146:5395607:5395706,	5395066	5395146	5395138	5395138	Frame_Shift_Del	T	-	p.K1027fs
LIHC	TCGA-DD-A3A0-01	EPB41L3	ENST00000341928.2,ENST00000342933.3	chr18	5410564:5410618:5415816:5416377:5419709:5419793,	5415817	5416377	5416044	5416044	Frame_Shift_Del	T	-	p.T614fs
LIHC	TCGA-DD-A3A0-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000342933.3,ENST00000400111.3,ENST00000544123.1,ENST00000545076.1	chr18	5438033:5438109:5443836:5443879:5445138:5445243,	5443837	5443879	5443847	5443847	Frame_Shift_Del	T	-	p.K173fs
LIHC	TCGA-DD-A3A0-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6080879:6080950:6093353:6093527:6138192:6138295,	6093354	6093527	6093409	6093409	Frame_Shift_Del	T	-	p.S440fs
LIHC	TCGA-DD-A3A0-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6080879:6080950:6093353:6093527:6138192:6138295,	6093354	6093527	6093416	6093416	Frame_Shift_Del	T	-	p.K437fs
LIHC	TCGA-DD-A3A0-01	PTPRM	ENST00000444013.1,ENST00000578571.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	8076452:8076562:8085668:8085870:8088746:8088849,	8085669	8085870	8085845	8085845	Frame_Shift_Del	A	-	p.T576fs
LIHC	TCGA-DD-A3A0-01	PTPRM	ENST00000444013.1,ENST00000332175.8,ENST00000400053.4	chr18	8247871:8247917:8253224:8253412:8296365:8296453,	8253225	8253412	8253270	8253270	Frame_Shift_Del	C	-	p.S858fs
LIHC	TCGA-DD-A3A0-01	NDUFV2	ENST00000400033.1,ENST00000465096.1,ENST00000318388.6	chr18	9119471:9119588:9122510:9122679:9124871:9124981,	9122511	9122679	9122561	9122561	Frame_Shift_Del	T	-	p.T120fs
LIHC	TCGA-DD-A3A0-01	ANKRD12	ENST00000400020.3,ENST00000546007.2,ENST00000262126.4,ENST00000383440.2,ENST00000540578.2	chr18	9211581:9211782:9216755:9216898:9221849:9221997,	9216756	9216898	9216793	9216793	Frame_Shift_Del	T	-	p.Y208fs
LIHC	TCGA-DD-A3A0-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255348	9255348	Frame_Shift_Del	T	-	p.F672fs
LIHC	TCGA-DD-A3A0-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255393	9255393	Frame_Shift_Del	T	-	p.F687fs
LIHC	TCGA-DD-A3A0-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256551	9256551	Frame_Shift_Del	A	-	p.K1074fs
LIHC	TCGA-DD-A3A0-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256802	9256802	Frame_Shift_Del	T	-	p.S1156fs
LIHC	TCGA-DD-A3A0-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257212	9257212	Frame_Shift_Del	T	-	p.I1293fs
LIHC	TCGA-DD-A3A0-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9257369	9257369	Frame_Shift_Del	T	-	p.S1345fs
LIHC	TCGA-DD-A3A0-01	RALBP1	ENST00000019317.4,ENST00000383432.3	chr18	9516842:9517301:9522157:9522507:9524591:9524753,	9522158	9522507	9522283	9522283	Frame_Shift_Del	A	-	p.N277fs
LIHC	TCGA-DD-A3A0-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9570154:9570681:9577061:9577189:9583114:9583273,	9577062	9577189	9577142	9577142	Frame_Shift_Del	A	-	p.F322fs
LIHC	TCGA-DD-A3A0-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9570154:9570681:9577061:9577189:9583114:9583273,	9577062	9577189	9577161	9577161	Frame_Shift_Del	C	-	p.G316fs
LIHC	TCGA-DD-A3A0-01	PPP4R1	ENST00000580583.1,ENST00000285124.8,ENST00000400556.3,ENST00000400555.3,ENST00000578875.1	chr18	9584773:9584826:9588086:9588233:9588708:9588851,	9588087	9588233	9588124	9588124	Frame_Shift_Del	G	-	p.P183fs
LIHC	TCGA-DD-A3A0-01	RAB31	ENST00000581109.1	chr18	9815112:9815219:9845578:9845688:9859224:9859283,9792150:9792232:9845578:9845688:9859224:9859283,	9845579	9845688	9845586	9845586	Frame_Shift_Del	C	-	p.P130fs
LIHC	TCGA-DD-A3A0-01	VAPA	ENST00000340541.4	chr18	9936982:9937063:9944920:9945055:9950391:9950565,	9944921	9945055	9945008	9945008	Frame_Shift_Del	A	-	p.K169fs
LIHC	TCGA-DD-A3A0-01	VAPA	ENST00000584796.1,ENST00000583475.1,ENST00000400000.2,ENST00000583879.1	chr18	9944920:9945055:9950391:9950565:9954049:9954140,9936982:9937063:9950391:9950565:9954049:9954140,	9950392	9950565	9950454	9950454	Frame_Shift_Del	A	-	p.P160fs
LIHC	TCGA-DD-A3A0-01	MPPE1	ENST00000309976.9,ENST00000317235.7	chr18	11885027:11885042:11885674:11885815:11886497:11886620,11884488:11884626:11885674:11885815:11886497:11886620,11884488:11884626:11885674:11885815:11886915:11887024,	11885675	11885815	11885712	11885712	Frame_Shift_Del	A	-	p.F324fs
LIHC	TCGA-DD-A3A0-01	MPPE1	ENST00000592306.1	chr18	11884488:11884626:11885674:11885911:11886497:11886620,	11885675	11885911	11885712	11885712	Frame_Shift_Del	A	-	p.F324fs
LIHC	TCGA-DD-A3A0-01	AFG3L2	ENST00000269143.3	chr18	12367274:12367381:12370847:12370925:12371590:12371690,	12370848	12370925	12370859	12370859	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-DD-A3A0-01	SPIRE1	ENST00000410092.3,ENST00000449797.1,ENST00000409402.4,ENST00000462226.1,ENST00000497844.2,ENST00000453447.2,ENST00000383356.2	chr18	12535476:12535600:12546672:12546903:12635060:12635095,	12546673	12546903	12546708	12546708	Frame_Shift_Del	T	-	p.I190fs
LIHC	TCGA-DD-A3A0-01	SPIRE1	ENST00000410092.3,ENST00000449797.1,ENST00000409402.4,ENST00000462226.1,ENST00000497844.2,ENST00000453447.2,ENST00000383356.2	chr18	12535476:12535600:12546672:12546903:12635060:12635095,	12546673	12546903	12546716	12546716	Frame_Shift_Del	T	-	p.K187fs
LIHC	TCGA-DD-A3A0-01	CEP76	ENST00000262127.2,ENST00000423709.2,ENST00000590143.1	chr18	12674534:12674752:12678107:12678441:12680660:12680827,	12678108	12678441	12678331	12678331	Frame_Shift_Del	C	-	p.G467fs
LIHC	TCGA-DD-A3A0-01	CEP76	ENST00000262127.2,ENST00000423709.2,ENST00000590143.1	chr18	12674534:12674752:12678107:12678441:12680660:12680827,	12678108	12678441	12678387	12678387	Frame_Shift_Del	T	-	p.K448fs
LIHC	TCGA-DD-A3A0-01	CEP192	ENST00000507254.2,ENST00000511820.2,ENST00000589993.1,ENST00000510237.1,ENST00000506447.1,ENST00000513432.1,ENST00000430049.2,ENST00000325971.8	chr18	13068850:13068990:13069087:13069180:13069736:13069855,	13069088	13069180	13069142	13069142	Frame_Shift_Del	A	-	p.K1673fs
LIHC	TCGA-DD-A3A0-01	CEP192	ENST00000511820.2,ENST00000589993.1,ENST00000510237.1,ENST00000506447.1,ENST00000513432.1,ENST00000430049.2,ENST00000325971.8	chr18	13069736:13069855:13071037:13071211:13072753:13072844,	13071038	13071211	13071148	13071148	Frame_Shift_Del	T	-	p.I1762fs
LIHC	TCGA-DD-A3A0-01	ANKRD30B	ENST00000580206.1,ENST00000358984.4	chr18	14797659:14797688:14797780:14797853:14799099:14799128,	14797781	14797853	14797810	14797810	Frame_Shift_Del	A	-	p.P662fs
LIHC	TCGA-DD-A3A0-01	ROCK1	ENST00000399799.2	chr18	18533538:18533746:18534743:18535005:18535127:18535206,	18534744	18535005	18534936	18534936	Frame_Shift_Del	T	-	p.T1221fs
LIHC	TCGA-DD-A3A0-01	GREB1L	ENST00000424526.1,ENST00000584446.1,ENST00000580732.2,ENST00000578368.1,ENST00000400483.4,ENST00000431264.1	chr18	19024184:19024370:19029470:19029797:19030983:19031028,	19029471	19029797	19029598	19029598	Frame_Shift_Del	C	-	p.L507fs
LIHC	TCGA-DD-A3A0-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000578955.1,ENST00000580732.2,ENST00000400483.4	chr18	19057124:19057317:19065580:19065714:19069972:19070192,	19065581	19065714	19065589	19065589	Frame_Shift_Del	G	-	p.V855fs
LIHC	TCGA-DD-A3A0-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000580732.2,ENST00000400483.4	chr18	19098133:19098195:19100648:19100784:19102618:19102782,	19100649	19100784	19100676	19100676	Frame_Shift_Del	C	-	p.P1834fs
LIHC	TCGA-DD-A3A0-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19112433:19112621:19116002:19116146:19119880:19119970,	19116003	19116146	19116039	19116039	Frame_Shift_Del	T	-	p.K717fs
LIHC	TCGA-DD-A3A0-01	ESCO1	ENST00000269214.5	chr18	19116002:19116146:19119880:19119970:19140819:19140951,	19119881	19119970	19119916	19119916	Frame_Shift_Del	C	-	p.V670fs
LIHC	TCGA-DD-A3A0-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154286	19154286	Frame_Shift_Del	T	-	p.K173fs
LIHC	TCGA-DD-A3A0-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154411	19154411	Frame_Shift_Del	A	-	p.S132fs
LIHC	TCGA-DD-A3A0-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154487	19154487	Frame_Shift_Del	T	-	p.K106fs
LIHC	TCGA-DD-A3A0-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154506	19154506	Frame_Shift_Del	T	-	p.K101fs
LIHC	TCGA-DD-A3A0-01	RBBP8	ENST00000399725.2,ENST00000582354.1,ENST00000399722.2,ENST00000327155.5,ENST00000399721.2,ENST00000360790.5	chr18	20529580:20529676:20548768:20548881:20555115:20555182,	20548769	20548881	20548821	20548821	Frame_Shift_Del	A	-	p.K102fs
LIHC	TCGA-DD-A3A0-01	NPC1	ENST00000540608.1,ENST00000269228.5	chr18	21131590:21131691:21134721:21134948:21136206:21136577,	21134722	21134948	21134812	21134812	Frame_Shift_Del	A	-	p.F488fs
LIHC	TCGA-DD-A3A0-01	NPC1	ENST00000540608.1,ENST00000269228.5	chr18	21131590:21131691:21134721:21134948:21136206:21136577,	21134722	21134948	21134920	21134920	Frame_Shift_Del	T	-	p.N452fs
LIHC	TCGA-DD-A3A0-01	ANKRD29	ENST00000591280.1,ENST00000592179.1	chr18	21189187:21189255:21192055:21192154:21197695:21197791,21181240:21181273:21192055:21192154:21197695:21197791,	21192056	21192154	21192149	21192149	Frame_Shift_Del	C	-	p.G243fs
LIHC	TCGA-DD-A3A0-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21418744:21418842:21419748:21419893:21422358:21422454,	21419749	21419893	21419796	21419796	Frame_Shift_Del	T	-	p.I1080fs
LIHC	TCGA-DD-A3A0-01	LAMA3	ENST00000586751.1,ENST00000399516.3,ENST00000313654.9,ENST00000269217.6,ENST00000587184.1,ENST00000588770.1	chr18	21487513:21487630:21487719:21487899:21489116:21489259,	21487720	21487899	21487869	21487869	Frame_Shift_Del	A	-	p.K2330fs
LIHC	TCGA-DD-A3A0-01	LAMA3	ENST00000588004.1	chr18	21529992:21530123:21531647:21531741:21532953:21533073,21529992:21530123:21531647:21531741:21534466:21534612,	21531648	21531741	21531701	21531701	Frame_Shift_Del	A	-	p.P3232fs
LIHC	TCGA-DD-A3A0-01	OSBPL1A	ENST00000319481.3,ENST00000399443.3,ENST00000357041.4	chr18	21752339:21752447:21757976:21758159:21759701:21759799,	21757977	21758159	21758119	21758119	Frame_Shift_Del	G	-	p.H652fs
LIHC	TCGA-DD-A3A0-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22804524	22804524	Frame_Shift_Del	G	-	p.Q1120fs
LIHC	TCGA-DD-A3A0-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807541	22807541	Frame_Shift_Del	G	-	p.P114fs
LIHC	TCGA-DD-A3A0-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807586	22807586	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-DD-A3A0-01	SS18	ENST00000539849.1,ENST00000269138.5	chr18	23632786:23632809:23637552:23637706:23667464:23667541,	23637553	23637706	23637654	23637654	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-DD-A3A0-01	DSC3	ENST00000434452.1,ENST00000360428.4	chr18	28604314:28604459:28605725:28605881:28609474:28609594,	28605726	28605881	28605729	28605729	Frame_Shift_Del	A	-	p.F209fs
LIHC	TCGA-DD-A3A0-01	DSC2	ENST00000251081.6,ENST00000280904.6	chr18	28660061:28660318:28662203:28662389:28662891:28663026,	28662204	28662389	28662251	28662251	Frame_Shift_Del	T	-	p.I406fs
LIHC	TCGA-DD-A3A0-01	DSC2	ENST00000251081.6,ENST00000280904.6	chr18	28662203:28662389:28662891:28663026:28666538:28666705,	28662892	28663026	28662997	28662997	Frame_Shift_Del	T	-	p.K324fs
LIHC	TCGA-DD-A3A0-01	DSG4	ENST00000359747.4,ENST00000308128.4	chr18	28979234:28979506:28980843:28980983:28983378:28983597,	28980844	28980983	28980934	28980934	Frame_Shift_Del	A	-	p.S456fs
LIHC	TCGA-DD-A3A0-01	B4GALT6	ENST00000237019.7	chr18	29225317:29225442:29237938:29238052:29246218:29246335,29225317:29225442:29237938:29238052:29264274:29264467,	29237939	29238052	29237989	29237989	Frame_Shift_Del	T	-	p.N99fs
LIHC	TCGA-DD-A3A0-01	TRAPPC8	ENST00000578886.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29426713:29426780:29429528:29429702:29432408:29432467,	29429529	29429702	29429604	29429604	Frame_Shift_Del	T	-	p.K1220fs
LIHC	TCGA-DD-A3A0-01	TRAPPC8	ENST00000578886.1,ENST00000580104.1,ENST00000283351.4,ENST00000582539.1	chr18	29426713:29426780:29429528:29429702:29432408:29432467,	29429529	29429702	29429637	29429637	Frame_Shift_Del	T	-	p.K1209fs
LIHC	TCGA-DD-A3A0-01	TRAPPC8	ENST00000582513.1,ENST00000580104.1	chr18	29497540:29497630:29511291:29511486:29522570:29522856,	29511292	29511486	29511441	29511441	Frame_Shift_Del	A	-	p.L68fs
LIHC	TCGA-DD-A3A0-01	TRAPPC8	ENST00000582513.1,ENST00000580104.1	chr18	29497540:29497630:29511291:29511486:29522570:29522856,	29511292	29511486	29511444	29511444	Frame_Shift_Del	T	-	p.N67fs
LIHC	TCGA-DD-A3A0-01	RNF138	ENST00000583733.1,ENST00000261593.3,ENST00000578107.1,ENST00000580499.1	chr18	29672664:29672849:29691716:29691882:29693707:29693757,	29691717	29691882	29691783	29691783	Frame_Shift_Del	A	-	p.G59fs
LIHC	TCGA-DD-A3A0-01	CCDC178	ENST00000583930.1,ENST00000406524.2,ENST00000383096.3,ENST00000402325.1,ENST00000579947.1,ENST00000300227.8,ENST00000403303.1	chr18	30847165:30847261:30873122:30873276:30903454:30903597,	30873123	30873276	30873148	30873148	Frame_Shift_Del	T	-	p.N384fs
LIHC	TCGA-DD-A3A0-01	NOL4	ENST00000538587.1,ENST00000587953.1,ENST00000261592.5,ENST00000588280.1,ENST00000269185.4,ENST00000589544.1,ENST00000590712.1	chr18	31684017:31684123:31685012:31685124:31709834:31709984,	31685013	31685124	31685036	31685036	Frame_Shift_Del	T	-	p.N168fs
LIHC	TCGA-DD-A3A0-01	NOL4	ENST00000538587.1,ENST00000587953.1,ENST00000261592.5,ENST00000588280.1,ENST00000269185.4,ENST00000589544.1,ENST00000590712.1	chr18	31684017:31684123:31685012:31685124:31709834:31709984,	31685013	31685124	31685039	31685039	Frame_Shift_Del	A	-	p.L167fs
LIHC	TCGA-DD-A3A0-01	DTNA	ENST00000601632.1,ENST00000348997.5,ENST00000269190.7,ENST00000399113.3,ENST00000444659.1,ENST00000269191.6,ENST00000269192.7	chr18	32418057:32418135:32418708:32418801:32428259:32428310,	32418709	32418801	32418786	32418786	Frame_Shift_Del	G	-	p.R417fs
LIHC	TCGA-DD-A3A0-01	ZNF397	ENST00000591206.1,ENST00000261333.6,ENST00000355632.4,ENST00000330501.7	chr18	32821565:32821654:32822354:32822848:32823115:32823202,32821018:32821073:32822354:32822848:32823115:32823202,	32822355	32822848	32822621	32822621	Frame_Shift_Del	G	-	p.G63fs
LIHC	TCGA-DD-A3A0-01	ZNF397	ENST00000591206.1,ENST00000261333.6,ENST00000355632.4,ENST00000330501.7	chr18	32821565:32821654:32822354:32822848:32823115:32823202,32821018:32821073:32822354:32822848:32823115:32823202,	32822355	32822848	32822791	32822791	Frame_Shift_Del	G	-	p.E120fs
LIHC	TCGA-DD-A3A0-01	GALNT1	ENST00000537549.1,ENST00000590654.1,ENST00000589189.1,ENST00000269195.5	chr18	33243597:33243766:33257554:33257721:33263354:33263562,	33257555	33257721	33257559	33257559	Frame_Shift_Del	A	-	p.K107fs
LIHC	TCGA-DD-A3A0-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706771	33706771	Frame_Shift_Del	T	-	p.N68fs
LIHC	TCGA-DD-A3A0-01	ELP2	ENST00000539560.1,ENST00000350494.6,ENST00000545632.1,ENST00000542824.1,ENST00000536373.1,ENST00000540323.1,ENST00000351393.6,ENST00000358232.6,ENST00000543439.1,ENST00000442325.2	chr18	33721099:33721164:33722243:33722310:33722788:33722820,	33722244	33722310	33722299	33722299	Frame_Shift_Del	G	-	p.W215fs
LIHC	TCGA-DD-A3A0-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000535093.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33724901:33724997:33725910:33726011:33726212:33726339,	33725911	33726011	33725958	33725958	Frame_Shift_Del	A	-	p.K314fs
LIHC	TCGA-DD-A3A0-01	ELP2	ENST00000423854.2,ENST00000350494.6,ENST00000542824.1,ENST00000351393.6,ENST00000358232.6,ENST00000442325.2	chr18	33739920:33739978:33747063:33747185:33750025:33750159,33744437:33744630:33747063:33747185:33750025:33750159,	33747064	33747185	33747070	33747070	Frame_Shift_Del	T	-	p.V654fs
LIHC	TCGA-DD-A3A0-01	MOCOS	ENST00000261326.5	chr18	33778652:33778719:33779645:33780287:33783075:33783152,	33779646	33780287	33779979	33779979	Frame_Shift_Del	C	-	p.Y211fs
LIHC	TCGA-DD-A3A0-01	TPGS2	ENST00000383056.3,ENST00000590500.1	chr18	34378429:34378572:34380160:34380274:34385336:34385360,34378429:34378572:34380160:34380274:34387809:34387897,	34380161	34380274	34380183	34380183	Frame_Shift_Del	A	-	p.L158fs
LIHC	TCGA-DD-A3A0-01	PIK3C3	ENST00000586545.1	chr18	39535226:39535324:39537534:39537723:39542453:39542597,	39537535	39537723	39537654	39537654	Frame_Shift_Del	T	-	p.V63fs
LIHC	TCGA-DD-A3A0-01	PIK3C3	ENST00000593098.1,ENST00000262039.4,ENST00000398870.3	chr18	39629494:39629569:39637846:39638015:39644703:39644794,	39637847	39638015	39637944	39637944	Frame_Shift_Del	G	-	p.M787fs
LIHC	TCGA-DD-A3A0-01	SLC14A1	ENST00000415427.3,ENST00000588179.1	chr18	43304914:43304978:43307225:43307383:43314238:43314297,43304914:43304978:43307225:43307383:43310264:43310436,	43307226	43307383	43307274	43307274	Frame_Shift_Del	C	-	p.A13fs
LIHC	TCGA-DD-A3A0-01	SIGLEC15	ENST00000546268.1,ENST00000593178.2,ENST00000602118.2,ENST00000389474.3	chr18	43418682:43419060:43420175:43420206:43422070:43422189,	43420176	43420206	43420188	43420188	Frame_Shift_Del	C	-	p.T296fs
LIHC	TCGA-DD-A3A0-01	EPG5	ENST00000592272.1,ENST00000590884.1,ENST00000587884.1,ENST00000282041.5,ENST00000585906.1	chr18	43458977:43459179:43460039:43460188:43462238:43462396,	43460040	43460188	43460118	43460118	Frame_Shift_Del	G	-	p.P1863fs
LIHC	TCGA-DD-A3A0-01	PSTPIP2	ENST00000409746.5	chr18	43572071:43572168:43573570:43573669:43577714:43577794,	43573571	43573669	43573655	43573655	Frame_Shift_Del	T	-	p.Q219fs
LIHC	TCGA-DD-A3A0-01	PIAS2	ENST00000545673.1	chr18	44435527:44435578:44444126:44444211:44470542:44471017,44435527:44435578:44444126:44444211:44497284:44497308,	44444127	44444211	44444168	44444168	Frame_Shift_Del	A	-	p.F181fs
LIHC	TCGA-DD-A3A0-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470582	44470582	Frame_Shift_Del	A	-	p.Y154fs
LIHC	TCGA-DD-A3A0-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470586	44470586	Frame_Shift_Del	G	-	p.P152fs
LIHC	TCGA-DD-A3A0-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470805	44470805	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-DD-A3A0-01	LIPG	ENST00000427224.2,ENST00000577628.1,ENST00000580036.1,ENST00000261292.4	chr18	47091686:47091868:47093811:47093991:47095806:47095918,	47093812	47093991	47093904	47093904	Frame_Shift_Del	C	-	p.L124fs
LIHC	TCGA-DD-A3A0-01	MYO5B	ENST00000285039.7	chr18	47431041:47431198:47432788:47433000:47438431:47438543,	47432789	47433000	47432995	47432995	Frame_Shift_Del	G	-	p.P736fs
LIHC	TCGA-DD-A3A0-01	MYO5B	ENST00000285039.7	chr18	47516808:47516890:47518657:47518801:47527624:47527781,	47518658	47518801	47518730	47518730	Frame_Shift_Del	A	-	p.F228fs
LIHC	TCGA-DD-A3A0-01	MYO5B	ENST00000285039.7	chr18	47518657:47518801:47527624:47527781:47563219:47563364,	47527625	47527781	47527733	47527733	Frame_Shift_Del	C	-	p.G168fs
LIHC	TCGA-DD-A3A0-01	SKA1	ENST00000398452.2,ENST00000285116.3	chr18	47906495:47906620:47908498:47908596:47911585:47911723,	47908499	47908596	47908551	47908551	Frame_Shift_Del	A	-	p.E89fs
LIHC	TCGA-DD-A3A0-01	MAPK4	ENST00000400384.2,ENST00000540640.1	chr18	48248307:48248469:48252331:48252545:48255527:48256471,	48252332	48252545	48252393	48252393	Frame_Shift_Del	G	-	p.M305fs
LIHC	TCGA-DD-A3A0-01	MAPK4	ENST00000400384.2,ENST00000540640.1	chr18	48248307:48248469:48252331:48252545:48255527:48256471,	48252332	48252545	48252405	48252405	Frame_Shift_Del	C	-	p.H309fs
LIHC	TCGA-DD-A3A0-01	MAPK4	ENST00000400384.2,ENST00000540640.1	chr18	48248307:48248469:48252331:48252545:48255527:48256471,	48252332	48252545	48252429	48252429	Frame_Shift_Del	C	-	p.C317fs
LIHC	TCGA-DD-A3A0-01	MRO	ENST00000590988.1,ENST00000431965.2,ENST00000588444.1,ENST00000592966.1	chr18	48327718:48327874:48331523:48331706:48333073:48333156,48326416:48326513:48331523:48331706:48333073:48333156,	48331524	48331706	48331631	48331631	Frame_Shift_Del	G	-	p.H108fs
LIHC	TCGA-DD-A3A0-01	ME2	ENST00000382927.3,ENST00000321341.5	chr18	48442537:48442613:48443716:48443878:48444479:48444583,	48443717	48443878	48443863	48443863	Frame_Shift_Del	G	-	p.V205fs
LIHC	TCGA-DD-A3A0-01	POLI	ENST00000579434.1,ENST00000577612.1,ENST00000580880.1,ENST00000579534.1,ENST00000583136.1,ENST00000577971.1	chr18	51800295:51800460:51804072:51804225:51807036:51807192,	51804073	51804225	51804125	51804125	Frame_Shift_Del	T	-	p.N153fs
LIHC	TCGA-DD-A3A0-01	CCDC68	ENST00000337363.4,ENST00000432185.1,ENST00000591504.1	chr18	52604063:52604189:52605187:52605328:52608227:52608289,	52605188	52605328	52605252	52605252	Frame_Shift_Del	T	-	p.K94fs
LIHC	TCGA-DD-A3A0-01	TXNL1	ENST00000217515.6,ENST00000540155.1,ENST00000590954.1,ENST00000587807.1	chr18	54270128:54270287:54278223:54278328:54281654:54281722,	54278224	54278328	54278243	54278243	Frame_Shift_Del	T	-	p.N274fs
LIHC	TCGA-DD-A3A0-01	TXNL1	ENST00000217515.6,ENST00000587613.1,ENST00000590954.1,ENST00000586262.1	chr18	54285271:54285357:54291518:54291692:54293591:54293688,	54291519	54291692	54291642	54291642	Frame_Shift_Del	A	-	p.F82fs
LIHC	TCGA-DD-A3A0-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54363472:54363693:54385194:54385390:54398613:54398828,	54385195	54385390	54385264	54385264	Frame_Shift_Del	A	-	p.K551fs
LIHC	TCGA-DD-A3A0-01	WDR7	ENST00000357574.3,ENST00000254442.3	chr18	54483261:54483375:54547174:54547396:54591152:54591339,	54547175	54547396	54547201	54547201	Frame_Shift_Del	A	-	p.K1112fs
LIHC	TCGA-DD-A3A0-01	NARS	ENST00000586807.1,ENST00000256854.5,ENST00000423481.2	chr18	55273847:55273983:55274365:55274565:55274675:55274715,	55274366	55274565	55274497	55274497	Frame_Shift_Del	A	-	p.F290fs
LIHC	TCGA-DD-A3A0-01	NARS	ENST00000591599.1,ENST00000587675.1,ENST00000256854.5,ENST00000411676.2,ENST00000588661.1	chr18	55276609:55276675:55278868:55278939:55280833:55280912,	55278869	55278939	55278936	55278936	Frame_Shift_Del	T	-	p.K142fs
LIHC	TCGA-DD-A3A0-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55317598:55317729:55319265:55319404:55319715:55319961,	55319266	55319404	55319338	55319338	Frame_Shift_Del	A	-	p.Y1110fs
LIHC	TCGA-DD-A3A0-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55319265:55319404:55319715:55319961:55321223:55321307,	55319716	55319961	55319894	55319894	Frame_Shift_Del	A	-	p.F1028fs
LIHC	TCGA-DD-A3A0-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55319715:55319961:55321223:55321307:55322425:55322649,	55321224	55321307	55321280	55321280	Frame_Shift_Del	G	-	p.L987fs
LIHC	TCGA-DD-A3A0-01	NEDD4L	ENST00000356462.6,ENST00000585323.1,ENST00000456986.1,ENST00000586268.1,ENST00000587190.1,ENST00000435432.2,ENST00000586263.1,ENST00000588494.1,ENST00000588066.1,ENST00000400345.3,ENST00000256832.7,ENST00000256830.9,ENST00000592846.1,ENST00000357895.5,ENST00000456173.2,ENST00000431212.2,ENST00000382850.4	chr18	55912658:55912740:55916130:55916169:55919232:55919286,	55916131	55916169	55916158	55916158	Frame_Shift_Del	T	-	p.F78fs
LIHC	TCGA-DD-A3A0-01	NEDD4L	ENST00000356462.6	chr18	56001049:56001124:56008909:56009029:56010137:56010335,	56008910	56009029	56009019	56009019	Frame_Shift_Del	C	-	p.A335fs
LIHC	TCGA-DD-A3A0-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203064	56203064	Frame_Shift_Del	A	-	p.L1452fs
LIHC	TCGA-DD-A3A0-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203913	56203913	Frame_Shift_Del	A	-	p.L1169fs
LIHC	TCGA-DD-A3A0-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L357fs
LIHC	TCGA-DD-A3A0-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56383166:56383199:56390279:56390483:56400628:56400806,	56390280	56390483	56390329	56390329	Frame_Shift_Del	C	-	p.H356fs
LIHC	TCGA-DD-A3A0-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56586686	56586686	Frame_Shift_Del	A	-	p.G389fs
LIHC	TCGA-DD-A3A0-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56587206	56587206	Frame_Shift_Del	C	-	p.P564fs
LIHC	TCGA-DD-A3A0-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60630600:60630705:60639746:60639941:60642629:60642858,	60639747	60639941	60639887	60639887	Frame_Shift_Del	A	-	p.Q722fs
LIHC	TCGA-DD-A3A0-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60630600:60630705:60639746:60639941:60642629:60642858,	60639747	60639941	60639938	60639938	Frame_Shift_Del	A	-	p.Q739fs
LIHC	TCGA-DD-A3A0-01	BCL2	ENST00000333681.4	chr18	60795444:60795992:60985314:60986185:60986406:60986613,	60985315	60986185	60985517	60985517	Frame_Shift_Del	C	-	p.G128fs
LIHC	TCGA-DD-A3A0-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367659	66367659	Frame_Shift_Del	A	-	p.F125fs
LIHC	TCGA-DD-A3A0-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367668	66367668	Frame_Shift_Del	A	-	p.I123fs
LIHC	TCGA-DD-A3A0-01	CCDC102B	ENST00000360242.5,ENST00000319445.6	chr18	66564455:66564665:66678170:66678341:66721266:66722426,	66678171	66678341	66678265	66678265	Frame_Shift_Del	A	-	p.Q453fs
LIHC	TCGA-DD-A3A0-01	CD226	ENST00000581982.1,ENST00000582621.1,ENST00000577287.1,ENST00000280200.4	chr18	67534592:67534647:67540379:67540482:67562936:67563045,	67540380	67540482	67540434	67540434	Frame_Shift_Del	A	-	p.L262fs
LIHC	TCGA-DD-A3A0-01	CNDP2	ENST00000579847.1,ENST00000580672.1,ENST00000584581.1,ENST00000324262.4,ENST00000583785.1	chr18	72168620:72168707:72178047:72178248:72179682:72179692,72176079:72176163:72178047:72178248:72179682:72179692,	72178048	72178248	72178144	72178144	Frame_Shift_Del	T	-	p.F185fs
LIHC	TCGA-DD-A3A0-01	CNDP1	ENST00000358821.3,ENST00000582365.1	chr18	72226557:72226707:72228090:72228253:72229281:72229370,	72228091	72228253	72228141	72228141	Frame_Shift_Del	G	-	p.L75fs
LIHC	TCGA-DD-A3A0-01	MBP	ENST00000579129.1,ENST00000580402.1,ENST00000355994.2	chr18	74701966:74702016:74728787:74729224:74778253:74778341,	74728788	74729224	74729096	74729096	Frame_Shift_Del	G	-	p.H90fs
LIHC	TCGA-DD-A3A0-01	ATP9B	ENST00000587878.1	chr18	76966976:76967012:77013380:77013541:77037053:77037196,	77013381	77013541	77013426	77013426	Frame_Shift_Del	T	-	p.F385fs
LIHC	TCGA-DD-A3A0-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000543761.1,ENST00000490210.2,ENST00000588921.1	chr18	77107906:77107925:77108131:77108196:77119353:77119462,	77108132	77108196	77108194	77108194	Frame_Shift_Del	G	-	p.V967fs
LIHC	TCGA-DD-A3A0-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470370	77470370	Frame_Shift_Del	T	-	p.L266fs
LIHC	TCGA-DD-A3A0-01	TXNL4A	ENST00000585474.1	chr18	77733565:77733856:77737597:77737701:77790520:77790577,77736717:77736787:77737597:77737701:77748239:77748502,77733565:77733856:77737597:77737701:77793850:77793891,	77737598	77737701	77737694	77737694	Frame_Shift_Del	T	-	p.N54fs
LIHC	TCGA-DD-A3A0-01	MIER2	ENST00000264819.4,ENST00000586994.3	chr19	327132:327256:327863:327989:334399:334542,	327864	327989	327930	327930	Frame_Shift_Del	G	-	p.P101fs
LIHC	TCGA-DD-A3A0-01	MADCAM1	ENST00000215637.3	chr19	498626:498825:501668:501929:504744:504965,	501669	501929	501711	501711	Frame_Shift_Del	C	-	p.S18fs
LIHC	TCGA-DD-A3A0-01	MADCAM1	ENST00000215637.3	chr19	498626:498825:501668:501929:504744:504965,	501669	501929	501746	501746	Frame_Shift_Del	C	-	p.P30fs
LIHC	TCGA-DD-A3A0-01	PALM	ENST00000338448.5,ENST00000264560.7,ENST00000589012.1,ENST00000592870.1	chr19	727563:727694:731094:731245:734172:734194,	731095	731245	731184	731184	Frame_Shift_Del	C	-	p.A120fs
LIHC	TCGA-DD-A3A0-01	PALM	ENST00000338448.5,ENST00000264560.7,ENST00000589012.1,ENST00000592870.1	chr19	727563:727694:731094:731245:734172:734194,	731095	731245	731190	731190	Frame_Shift_Del	C	-	p.A122fs
LIHC	TCGA-DD-A3A0-01	MED16	ENST00000312090.6,ENST00000325464.1,ENST00000269814.4,ENST00000606248.1	chr19	890136:890244:890962:891149:893085:893158,	890963	891149	891047	891047	Frame_Shift_Del	G	-	p.H29fs
LIHC	TCGA-DD-A3A0-01	KISS1R	ENST00000234371.5,ENST00000606939.1	chr19	917502:917746:918543:918668:919489:919536,	918544	918668	918598	918598	Frame_Shift_Del	C	-	p.A100fs
LIHC	TCGA-DD-A3A0-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6	chr19	1056932:1057083:1057312:1057428:1057913:1058058,	1057313	1057428	1057383	1057383	Frame_Shift_Del	C	-	p.A1612fs
LIHC	TCGA-DD-A3A0-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6,ENST00000532194.2,ENST00000525073.2	chr19	1058144:1058268:1058616:1058746:1058818:1058939,	1058617	1058746	1058637	1058637	Frame_Shift_Del	C	-	p.P1724fs
LIHC	TCGA-DD-A3A0-01	POLR2E	ENST00000591709.1,ENST00000586746.1,ENST00000215587.7	chr19	1091790:1091906:1093902:1094077:1095257:1095335,	1093903	1094077	1094004	1094004	Frame_Shift_Del	G	-	p.S44fs
LIHC	TCGA-DD-A3A0-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3	chr19	1112816:1112948:1113533:1113703:1114229:1114421,	1113534	1113703	1113650	1113650	Frame_Shift_Del	C	-	p.V711fs
LIHC	TCGA-DD-A3A0-01	CIRBP	ENST00000590704.1,ENST00000589710.1,ENST00000589686.1	chr19	1269354:1269409:1270865:1271035:1271138:1271245,	1270866	1271035	1270955	1270955	Frame_Shift_Del	T	-	p.L8fs
LIHC	TCGA-DD-A3A0-01	CIRBP	ENST00000587169.1,ENST00000593048.1,ENST00000444172.2,ENST00000591376.1,ENST00000592412.1	chr19	1269354:1269409:1270926:1271035:1271138:1271245,1269354:1269409:1270926:1271035:1271327:1271360,	1270927	1271035	1270955	1270955	Frame_Shift_Del	T	-	p.L8fs
LIHC	TCGA-DD-A3A0-01	DAZAP1	ENST00000336761.6,ENST00000233078.4,ENST00000592453.1	chr19	1422346:1422395:1425876:1425959:1428840:1428900,	1425877	1425959	1425954	1425954	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-DD-A3A0-01	PCSK4	ENST00000588671.1,ENST00000588195.1,ENST00000300954.5	chr19	1488186:1488279:1489791:1489896:1490156:1490334,	1489792	1489896	1489799	1489799	Frame_Shift_Del	T	-	p.N96fs
LIHC	TCGA-DD-A3A0-01	TCF3	ENST00000262965.5,ENST00000588136.1,ENST00000586318.1,ENST00000344749.5,ENST00000587235.1	chr19	1627357:1627425:1646353:1646426:1650175:1650275,1632330:1632404:1646353:1646426:1650175:1650275,	1646354	1646426	1646395	1646395	Frame_Shift_Del	C	-	p.G35fs
LIHC	TCGA-DD-A3A0-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918916	1918916	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-DD-A3A0-01	MKNK2	ENST00000589441.1	chr19	2037630:2037828:2039629:2039855:2040132:2040176,	2039630	2039855	2039657	2039657	Frame_Shift_Del	G	-	p.A451fs
LIHC	TCGA-DD-A3A0-01	AP3D1	ENST00000355272.6	chr19	2111677:2111827:2112858:2112966:2113334:2113412,	2112859	2112966	2112874	2112874	Frame_Shift_Del	C	-	p.G924fs
LIHC	TCGA-DD-A3A0-01	AP3D1	ENST00000356926.4	chr19	2111677:2111827:2112858:2112930:2113334:2113412,	2112859	2112930	2112874	2112874	Frame_Shift_Del	C	-	p.G924fs
LIHC	TCGA-DD-A3A0-01	DOT1L	ENST00000398665.3	chr19	2217770:2217917:2220106:2220221:2221974:2222558,	2220107	2220221	2220159	2220159	Frame_Shift_Del	A	-	p.E915fs
LIHC	TCGA-DD-A3A0-01	OAZ1	ENST00000592787.2	chr19	2270289:2270675:2271383:2271529:2271780:2271953,2269654:2269743:2271383:2271529:2271780:2271953,	2271384	2271529	2271395	2271395	Frame_Shift_Del	C	-	p.S53fs
LIHC	TCGA-DD-A3A0-01	OAZ1	ENST00000581150.2,ENST00000593012.1	chr19	2269547:2269743:2271383:2271953:2272733:2272776,	2271384	2271953	2271395	2271395	Frame_Shift_Del	C	-	p.S53fs
LIHC	TCGA-DD-A3A0-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000591529.1,ENST00000426948.2,ENST00000443826.3	chr19	3008866:3008943:3009539:3009700:3011019:3011158,	3009540	3009700	3009669	3009669	Frame_Shift_Del	G	-	p.P348fs
LIHC	TCGA-DD-A3A0-01	GNA15	ENST00000586082.1,ENST00000262958.3	chr19	3150128:3150283:3151704:3151833:3155820:3155824,	3151705	3151833	3151781	3151781	Frame_Shift_Del	C	-	p.P188fs
LIHC	TCGA-DD-A3A0-01	FZR1	ENST00000591290.1	chr19	3531908:3532093:3532574:3532648:3533291:3533396,	3532575	3532648	3532608	3532608	Frame_Shift_Del	A	-	p.Q401fs
LIHC	TCGA-DD-A3A0-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532608	3532608	Frame_Shift_Del	A	-	p.Q401fs
LIHC	TCGA-DD-A3A0-01	EEF2	ENST00000309311.6	chr19	3983251:3983289:3984133:3984348:3985375:3985461,	3984134	3984348	3984195	3984195	Frame_Shift_Del	C	-	p.E53fs
LIHC	TCGA-DD-A3A0-01	CREB3L3	ENST00000602147.1,ENST00000602257.1,ENST00000078445.2	chr19	4154895:4155024:4156991:4157292:4159660:4159779,	4156992	4157292	4157077	4157077	Frame_Shift_Del	C	-	p.S81fs
LIHC	TCGA-DD-A3A0-01	CREB3L3	ENST00000595923.1	chr19	4154895:4155024:4156994:4157292:4159660:4159779,	4156995	4157292	4157077	4157077	Frame_Shift_Del	C	-	p.S81fs
LIHC	TCGA-DD-A3A0-01	TMIGD2	ENST00000301272.2	chr19	4294771:4294813:4297982:4298342:4302336:4302382,	4297983	4298342	4298218	4298218	Frame_Shift_Del	A	-	p.V57fs
LIHC	TCGA-DD-A3A0-01	CHAF1A	ENST00000585371.1,ENST00000587739.1,ENST00000301280.5	chr19	4423331:4423392:4423802:4423871:4428660:4428860,	4423803	4423871	4423864	4423864	Frame_Shift_Del	C	-	p.A457fs
LIHC	TCGA-DD-A3A0-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5207932:5208068:5208247:5208402:5210479:5210605,	5208248	5208402	5208330	5208330	Frame_Shift_Del	C	-	p.E1855fs
LIHC	TCGA-DD-A3A0-01	SAFB	ENST00000454510.1,ENST00000588852.1,ENST00000433404.1,ENST00000292123.5	chr19	5654378:5654467:5657251:5657358:5661531:5661819,5654378:5654467:5657251:5657358:5661528:5661819,	5657252	5657358	5657352	5657352	Frame_Shift_Del	C	-	p.S619fs
LIHC	TCGA-DD-A3A0-01	HSD11B1L	ENST00000582346.1	chr19	5684999:5685130:5686426:5686538:5686910:5687002,5684829:5684916:5686426:5686538:5686910:5687002,	5686427	5686538	5686455	5686455	Frame_Shift_Del	C	-	p.A78fs
LIHC	TCGA-DD-A3A0-01	RPL36	ENST00000577222.1,ENST00000579649.1,ENST00000394580.2,ENST00000347512.3	chr19	5690516:5690611:5691329:5691464:5691542:5691555,	5691330	5691464	5691422	5691422	Frame_Shift_Del	G	-	p.K62fs
LIHC	TCGA-DD-A3A0-01	DUS3L	ENST00000592468.1	chr19	5786477:5786553:5786759:5786930:5787071:5787182,	5786760	5786930	5786766	5786766	Frame_Shift_Del	G	-	p.L494fs
LIHC	TCGA-DD-A3A0-01	DUS3L	ENST00000320699.8,ENST00000309061.7	chr19	5786477:5786553:5786759:5786856:5787071:5787182,	5786760	5786856	5786766	5786766	Frame_Shift_Del	G	-	p.L494fs
LIHC	TCGA-DD-A3A0-01	KHSRP	ENST00000595223.1,ENST00000398148.3	chr19	6415619:6415745:6415818:6415907:6416308:6416418,	6415819	6415907	6415849	6415849	Frame_Shift_Del	G	-	p.Q553fs
LIHC	TCGA-DD-A3A0-01	KHSRP	ENST00000595223.1,ENST00000398148.3	chr19	6415619:6415745:6415818:6415907:6416308:6416418,	6415819	6415907	6415893	6415893	Frame_Shift_Del	G	-	p.P539fs
LIHC	TCGA-DD-A3A0-01	KHSRP	ENST00000599395.1,ENST00000595112.1,ENST00000595548.1,ENST00000398148.3	chr19	6418493:6418592:6418712:6418887:6419213:6419271,	6418713	6418887	6418849	6418849	Frame_Shift_Del	C	-	p.G215fs
LIHC	TCGA-DD-A3A0-01	DENND1C	ENST00000543576.1,ENST00000590818.1,ENST00000590444.1,ENST00000590867.1,ENST00000381480.2	chr19	6472899:6473004:6475284:6475410:6475494:6475596,	6475285	6475410	6475374	6475374	Frame_Shift_Del	G	-	p.L322fs
LIHC	TCGA-DD-A3A0-01	CD70	ENST00000423145.3	chr19	6583193:6583489:6586164:6586416:6590113:6590147,	6586165	6586416	6586313	6586313	Frame_Shift_Del	A	-	p.R100fs
LIHC	TCGA-DD-A3A0-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755180	6755180	Frame_Shift_Del	G	-	p.R215fs
LIHC	TCGA-DD-A3A0-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7152736:7152938:7163042:7163210:7166164:7166415,	7163043	7163210	7163206	7163206	Frame_Shift_Del	G	-	p.P622fs
LIHC	TCGA-DD-A3A0-01	PNPLA6	ENST00000545201.2,ENST00000600737.1,ENST00000450331.3,ENST00000414982.3,ENST00000221249.6	chr19	7618760:7618901:7619094:7619158:7619440:7619609,	7619095	7619158	7619138	7619138	Frame_Shift_Del	G	-	p.L777fs
LIHC	TCGA-DD-A3A0-01	CAMSAP3	ENST00000446248.2	chr19	7671662:7671695:7672706:7672754:7673011:7673150,	7672707	7672754	7672746	7672746	Frame_Shift_Del	C	-	p.P233fs
LIHC	TCGA-DD-A3A0-01	XAB2	ENST00000534844.1,ENST00000358368.4	chr19	7685160:7685332:7685432:7685555:7685731:7685922,	7685433	7685555	7685489	7685489	Frame_Shift_Del	C	-	p.E680fs
LIHC	TCGA-DD-A3A0-01	XAB2	ENST00000534844.1,ENST00000595288.1,ENST00000358368.4	chr19	7688055:7688175:7688616:7688768:7689186:7689271,	7688617	7688768	7688678	7688678	Frame_Shift_Del	T	-	p.N353fs
LIHC	TCGA-DD-A3A0-01	STXBP2	ENST00000597068.1,ENST00000414284.2,ENST00000600702.1,ENST00000221283.5,ENST00000441779.2,ENST00000601061.1	chr19	7710132:7710192:7711134:7711230:7712047:7712133,	7711135	7711230	7711205	7711205	Frame_Shift_Del	C	-	p.T487fs
LIHC	TCGA-DD-A3A0-01	STXBP2	ENST00000599400.1	chr19	7710132:7710192:7711057:7711230:7712047:7712133,	7711058	7711230	7711205	7711205	Frame_Shift_Del	C	-	p.T487fs
LIHC	TCGA-DD-A3A0-01	ELAVL1	ENST00000596459.1,ENST00000351593.5,ENST00000407627.2	chr19	8028513:8028691:8032448:8032674:8038608:8038669,	8032449	8032674	8032530	8032530	Frame_Shift_Del	T	-	p.N192fs
LIHC	TCGA-DD-A3A0-01	ELAVL1	ENST00000596459.1,ENST00000351593.5,ENST00000407627.2	chr19	8028513:8028691:8032448:8032674:8038608:8038669,	8032449	8032674	8032615	8032615	Frame_Shift_Del	T	-	p.I164fs
LIHC	TCGA-DD-A3A0-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8136931:8137082:8137946:8138181:8139954:8140074,	8137947	8138181	8138153	8138153	Frame_Shift_Del	G	-	p.P2577fs
LIHC	TCGA-DD-A3A0-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8139954:8140074:8140166:8140295:8145886:8145940,	8140167	8140295	8140229	8140229	Frame_Shift_Del	C	-	p.G2507fs
LIHC	TCGA-DD-A3A0-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8209760:8209856:8210726:8210822:8211010:8211109,	8210727	8210822	8210789	8210789	Frame_Shift_Del	C	-	p.G128fs
LIHC	TCGA-DD-A3A0-01	ANGPTL4	ENST00000301455.2,ENST00000595079.1,ENST00000593998.1,ENST00000541807.1,ENST00000393962.2	chr19	8435939:8436035:8436124:8436406:8438588:8438839,	8436125	8436406	8436303	8436303	Frame_Shift_Del	G	-	p.L312fs
LIHC	TCGA-DD-A3A0-01	RAB11B	ENST00000328024.6,ENST00000594216.1	chr19	8455272:8455340:8464746:8464942:8466969:8467041,	8464747	8464942	8464758	8464758	Frame_Shift_Del	G	-	p.G18fs
LIHC	TCGA-DD-A3A0-01	ZNF414	ENST00000255616.8	chr19	8577487:8577595:8577912:8578225:8578927:8579032,	8577913	8578225	8578029	8578029	Frame_Shift_Del	C	-	p.G67fs
LIHC	TCGA-DD-A3A0-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8962353:8962395:8966649:8966816:8968879:8968947,	8966650	8966816	8966677	8966677	Frame_Shift_Del	G	-	p.L14426fs
LIHC	TCGA-DD-A3A0-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000397910.4,ENST00000601404.1	chr19	8971675:8971824:8973548:8973616:8982156:8982329,8971675:8971824:8973548:8973616:8973971:8974102,	8973549	8973616	8973599	8973599	Frame_Shift_Del	T	-	p.K14239fs
LIHC	TCGA-DD-A3A0-01	ZNF426	ENST00000253115.2,ENST00000535489.1,ENST00000589289.1	chr19	9644519:9644642:9645863:9645955:9646883:9647032,	9645864	9645955	9645934	9645934	Frame_Shift_Del	G	-	p.P16fs
LIHC	TCGA-DD-A3A0-01	ZNF846	ENST00000588267.1	chr19	9863065:9863116:9868734:9869440:9872757:9872841,	9868735	9869440	9869222	9869222	Frame_Shift_Del	T	-	p.K177fs
LIHC	TCGA-DD-A3A0-01	COL5A3	ENST00000264828.3	chr19	10081297:10081351:10081650:10081704:10081880:10081934,	10081651	10081704	10081655	10081655	Frame_Shift_Del	C	-	p.G1293fs
LIHC	TCGA-DD-A3A0-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4	chr19	10254441:10254663:10257026:10257200:10259559:10259693,	10257027	10257200	10257045	10257045	Frame_Shift_Del	G	-	p.P943fs
LIHC	TCGA-DD-A3A0-01	ICAM1	ENST00000588645.1	chr19	10381795:10381902:10385440:10385704:10394156:10394170,	10385441	10385704	10385574	10385574	Frame_Shift_Del	G	-	p.K67fs
LIHC	TCGA-DD-A3A0-01	RAVER1	ENST00000293677.6	chr19	10434181:10434242:10439317:10439787:10443964:10444167,10434181:10434242:10439317:10439787:10441135:10441202,	10439318	10439787	10439784	10439784	Frame_Shift_Del	A	-	p.F114fs
LIHC	TCGA-DD-A3A0-01	ICAM3	ENST00000587992.1,ENST00000160262.5	chr19	10446642:10446652:10449357:10449624:10450214:10450295,	10449358	10449624	10449392	10449392	Frame_Shift_Del	A	-	p.S26fs
LIHC	TCGA-DD-A3A0-01	ICAM3	ENST00000585439.1	chr19	10446642:10446652:10449357:10449539:10450214:10450295,	10449358	10449539	10449392	10449392	Frame_Shift_Del	A	-	p.S26fs
LIHC	TCGA-DD-A3A0-01	ICAM3	ENST00000589261.1	chr19	10446642:10446652:10449357:10449921:10450214:10450295,	10449358	10449921	10449392	10449392	Frame_Shift_Del	A	-	p.S26fs
LIHC	TCGA-DD-A3A0-01	TYK2	ENST00000525621.1,ENST00000264818.6,ENST00000524462.1,ENST00000529370.1	chr19	10472753:10472857:10472939:10473132:10473224:10473333,	10472940	10473132	10473091	10473091	Frame_Shift_Del	G	-	p.P506fs
LIHC	TCGA-DD-A3A0-01	ATG4D	ENST00000309469.4,ENST00000586417.1	chr19	10655795:10655806:10657514:10657791:10657864:10657929,	10657515	10657791	10657546	10657546	Frame_Shift_Del	C	-	p.G175fs
LIHC	TCGA-DD-A3A0-01	ATG4D	ENST00000587256.1	chr19	10655795:10655806:10657514:10657758:10657864:10657929,	10657515	10657758	10657546	10657546	Frame_Shift_Del	C	-	p.G175fs
LIHC	TCGA-DD-A3A0-01	ATG4D	ENST00000590096.1	chr19	10655795:10655806:10657514:10657929:10659579:10659710,	10657515	10657929	10657546	10657546	Frame_Shift_Del	C	-	p.G175fs
LIHC	TCGA-DD-A3A0-01	ATG4D	ENST00000588857.1	chr19	10655795:10655806:10657514:10657747:10657864:10657929,	10657515	10657747	10657546	10657546	Frame_Shift_Del	C	-	p.G175fs
LIHC	TCGA-DD-A3A0-01	ATG4D	ENST00000309469.4,ENST00000588667.1,ENST00000586417.1,ENST00000588857.1,ENST00000587256.1	chr19	10655795:10655806:10659579:10659710:10662572:10662651,10657864:10657929:10659579:10659710:10662572:10662651,	10659580	10659710	10659587	10659587	Frame_Shift_Del	G	-	p.K281fs
LIHC	TCGA-DD-A3A0-01	KRI1	ENST00000361821.5,ENST00000539027.1,ENST00000312962.6,ENST00000478863.1	chr19	10673404:10673513:10675604:10675710:10676581:10676647,10673404:10673513:10675604:10675710:10676392:10676466,	10675605	10675710	10675644	10675644	Frame_Shift_Del	G	-	p.R85fs
LIHC	TCGA-DD-A3A0-01	AP1M2	ENST00000590923.1	chr19	10689567:10689639:10690391:10690540:10691941:10692068,	10690392	10690540	10690497	10690497	Frame_Shift_Del	T	-	p.K239fs
LIHC	TCGA-DD-A3A0-01	AP1M2	ENST00000250244.6,ENST00000591240.1	chr19	10689567:10689639:10690391:10690534:10691941:10692068,	10690392	10690534	10690497	10690497	Frame_Shift_Del	T	-	p.K239fs
LIHC	TCGA-DD-A3A0-01	SLC44A2	ENST00000588393.1,ENST00000407327.4,ENST00000335757.5,ENST00000586078.1	chr19	10746106:10746191:10746998:10747261:10747337:10747432,	10746999	10747261	10747039	10747039	Frame_Shift_Del	C	-	p.A425fs
LIHC	TCGA-DD-A3A0-01	ILF3	ENST00000590261.1,ENST00000318511.3,ENST00000449870.1,ENST00000588657.1	chr19	10794592:10794646:10798021:10798384:10799225:10799354,	10798022	10798384	10798146	10798146	Frame_Shift_Del	A	-	p.P732fs
LIHC	TCGA-DD-A3A0-01	ILF3	ENST00000591649.1,ENST00000590261.1,ENST00000318511.3,ENST00000449870.1,ENST00000587928.1,ENST00000588657.1	chr19	10794592:10794646:10799225:10799354:10799854:10799988,10798275:10798384:10799225:10799354:10799854:10799988,	10799226	10799354	10799303	10799303	Frame_Shift_Del	G	-	p.G839fs
LIHC	TCGA-DD-A3A0-01	QTRT1	ENST00000585885.1,ENST00000250237.5,ENST00000421333.2,ENST00000589488.1	chr19	10812625:10812694:10812791:10812930:10817385:10817501,10812625:10812694:10812791:10812930:10817977:10818056,	10812792	10812930	10812865	10812865	Frame_Shift_Del	C	-	p.S129fs
LIHC	TCGA-DD-A3A0-01	QTRT1	ENST00000592254.1	chr19	10812625:10812694:10812836:10812930:10817977:10818056,	10812837	10812930	10812865	10812865	Frame_Shift_Del	C	-	p.S129fs
LIHC	TCGA-DD-A3A0-01	DNM2	ENST00000587830.2,ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000585892.1,ENST00000359692.6,ENST00000591701.1	chr19	10897239:10897382:10904395:10904531:10906047:10906115,	10904396	10904531	10904513	10904513	Frame_Shift_Del	C	-	p.F370fs
LIHC	TCGA-DD-A3A0-01	DNM2	ENST00000355667.6,ENST00000585892.1,ENST00000359692.6	chr19	10906047:10906115:10906736:10906875:10909161:10909238,	10906737	10906875	10906801	10906801	Frame_Shift_Del	A	-	p.K421fs
LIHC	TCGA-DD-A3A0-01	TMED1	ENST00000591695.1	chr19	10943726:10943889:10945931:10946029:10946684:10946871,	10945932	10946029	10945939	10945939	Frame_Shift_Del	C	-	p.V92fs
LIHC	TCGA-DD-A3A0-01	CARM1	ENST00000586508.1,ENST00000586221.1,ENST00000344150.4,ENST00000327064.4,ENST00000590699.1	chr19	11031111:11031249:11031334:11031424:11031509:11031546,	11031335	11031424	11031365	11031365	Frame_Shift_Del	G	-	p.Q455fs
LIHC	TCGA-DD-A3A0-01	CARM1	ENST00000344150.4	chr19	11031509:11031622:11031725:11031803:11032290:11032576,	11031726	11031803	11031785	11031785	Frame_Shift_Del	A	-	p.N534fs
LIHC	TCGA-DD-A3A0-01	EPOR	ENST00000591958.1,ENST00000592375.2,ENST00000222139.6,ENST00000586890.1,ENST00000588859.1,ENST00000588681.1	chr19	11489366:11489454:11491559:11491647:11491731:11491885,	11491560	11491647	11491636	11491636	Frame_Shift_Del	G	-	p.L251fs
LIHC	TCGA-DD-A3A0-01	RGL3	ENST00000393423.3	chr19	11508120:11508273:11510530:11510645:11510715:11510780,	11510531	11510645	11510548	11510548	Frame_Shift_Del	G	-	p.Q577fs
LIHC	TCGA-DD-A3A0-01	RGL3	ENST00000563726.1,ENST00000380456.3,ENST00000566153.1,ENST00000562663.1	chr19	11508120:11508273:11510530:11510627:11510715:11510780,	11510531	11510627	11510548	11510548	Frame_Shift_Del	G	-	p.Q577fs
LIHC	TCGA-DD-A3A0-01	RGL3	ENST00000566153.1	chr19	11510881:11510973:11512686:11513217:11513325:11513382,	11512687	11513217	11512734	11512734	Frame_Shift_Del	G	-	p.P479fs
LIHC	TCGA-DD-A3A0-01	RGL3	ENST00000563726.1,ENST00000380456.3,ENST00000562663.1,ENST00000393423.3	chr19	11510881:11510973:11512686:11512808:11512890:11512923,	11512687	11512808	11512734	11512734	Frame_Shift_Del	G	-	p.P479fs
LIHC	TCGA-DD-A3A0-01	RGL3	ENST00000589032.1	chr19	11513325:11513382:11515822:11515907:11517094:11517256,	11515823	11515907	11515827	11515827	Frame_Shift_Del	A	-	p.F394fs
LIHC	TCGA-DD-A3A0-01	ZNF440	ENST00000427505.1	chr19	11925158:11925265:11941088:11941224:11941431:11941492,	11941089	11941224	11941165	11941165	Frame_Shift_Del	C	-	p.S24fs
LIHC	TCGA-DD-A3A0-01	MAN2B1	ENST00000466794.1,ENST00000221363.4,ENST00000456935.2	chr19	12759949:12760030:12760154:12760242:12760726:12760828,	12760155	12760242	12760227	12760227	Frame_Shift_Del	G	-	p.P761fs
LIHC	TCGA-DD-A3A0-01	FBXW9	ENST00000393261.3,ENST00000380339.3,ENST00000587955.1	chr19	12802001:12802071:12802155:12802268:12805407:12805536,	12802156	12802268	12802193	12802193	Frame_Shift_Del	C	-	p.D252fs
LIHC	TCGA-DD-A3A0-01	TNPO2	ENST00000585886.1,ENST00000588216.1,ENST00000356861.5,ENST00000450764.2,ENST00000441499.1,ENST00000425528.1,ENST00000592287.1	chr19	12816305:12816413:12816495:12816582:12817009:12817096,	12816496	12816582	12816557	12816557	Frame_Shift_Del	G	-	p.P565fs
LIHC	TCGA-DD-A3A0-01	TNPO2	ENST00000588491.1	chr19	12816305:12816413:12816495:12816644:12817009:12817096,	12816496	12816644	12816557	12816557	Frame_Shift_Del	G	-	p.P565fs
LIHC	TCGA-DD-A3A0-01	DNASE2	ENST00000538460.1,ENST00000592506.1	chr19	12987067:12987177:12989195:12989393:12991615:12991694,	12989196	12989393	12989238	12989238	Frame_Shift_Del	C	-	p.A223fs
LIHC	TCGA-DD-A3A0-01	FARSA	ENST00000586280.1,ENST00000588965.1,ENST00000593021.1,ENST00000314606.4,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13039386:13039477:13039568:13039661:13041036:13041155,	13039569	13039661	13039634	13039634	Frame_Shift_Del	T	-	p.K217fs
LIHC	TCGA-DD-A3A0-01	NFIX	ENST00000585575.1,ENST00000587260.1,ENST00000397661.2,ENST00000585382.1,ENST00000592199.1,ENST00000586797.1,ENST00000588228.1,ENST00000587760.1	chr19	13186348:13186485:13189426:13189549:13192493:13192649,	13189427	13189549	13189493	13189493	Frame_Shift_Del	C	-	p.S341fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000588746.1	chr19	13226092:13226216:13226439:13226582:13226810:13226841,13226277:13226280:13226439:13226582:13226810:13226841,13226277:13226280:13226439:13226582:13226919:13227245,	13226440	13226582	13226516	13226516	Frame_Shift_Del	T	-	p.K126fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000592814.1,ENST00000592062.1,ENST00000588229.1	chr19	13226092:13226280:13226959:13227245:13227466:13227516,13226810:13226866:13226959:13227245:13227466:13227516,	13226960	13227245	13227013	13227013	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000591425.1	chr19	13226092:13226280:13226919:13227245:13227466:13227516,	13226920	13227245	13227013	13227013	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000593157.1	chr19	13226810:13226866:13226959:13227154:13227466:13227516,	13226960	13227154	13227013	13227013	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000592892.1	chr19	13226810:13226866:13226985:13227245:13227466:13227516,	13226986	13227245	13227013	13227013	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000588813.1	chr19	13226810:13226866:13227000:13227154:13227466:13227516,	13227001	13227154	13227013	13227013	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000586224.1	chr19	13226810:13226866:13227000:13227245:13227466:13227516,	13227001	13227245	13227013	13227013	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000592814.1,ENST00000592062.1,ENST00000588229.1	chr19	13226092:13226280:13226959:13227245:13227466:13227516,13226810:13226866:13226959:13227245:13227466:13227516,	13226960	13227245	13227088	13227088	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000591425.1	chr19	13226092:13226280:13226919:13227245:13227466:13227516,	13226920	13227245	13227088	13227088	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000593157.1	chr19	13226810:13226866:13226959:13227154:13227466:13227516,	13226960	13227154	13227088	13227088	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000592892.1	chr19	13226810:13226866:13226985:13227245:13227466:13227516,	13226986	13227245	13227088	13227088	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000588813.1	chr19	13226810:13226866:13227000:13227154:13227466:13227516,	13227001	13227154	13227088	13227088	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A3A0-01	TRMT1	ENST00000586224.1	chr19	13226810:13226866:13227000:13227245:13227466:13227516,	13227001	13227245	13227088	13227088	Frame_Shift_Del	C	-	p.G42fs
LIHC	TCGA-DD-A3A0-01	CACNA1A	ENST00000585802.1,ENST00000587525.1	chr19	13320125:13320312:13322916:13323030:13323197:13323336,	13322917	13323030	13323008	13323008	Frame_Shift_Del	C	-	p.G2071fs
LIHC	TCGA-DD-A3A0-01	CACNA1A	ENST00000360228.5,ENST00000573710.2	chr19	13443682:13443739:13445191:13445307:13446619:13446723,	13445192	13445307	13445208	13445208	Frame_Shift_Del	C	-	p.E394fs
LIHC	TCGA-DD-A3A0-01	ZSWIM4	ENST00000254323.2,ENST00000590508.1,ENST00000440752.2	chr19	13928535:13928790:13930170:13930306:13934159:13934314,	13930171	13930306	13930279	13930279	Frame_Shift_Del	C	-	p.A561fs
LIHC	TCGA-DD-A3A0-01	CC2D1A	ENST00000589606.1	chr19	14017254:14017314:14020635:14020771:14023135:14023251,	14020636	14020771	14020732	14020732	Frame_Shift_Del	G	-	p.G54fs
LIHC	TCGA-DD-A3A0-01	CC2D1A	ENST00000589138.1,ENST00000589606.1,ENST00000318003.7	chr19	14029942:14030015:14030630:14030764:14031369:14031481,	14030631	14030764	14030635	14030635	Frame_Shift_Del	C	-	p.F409fs
LIHC	TCGA-DD-A3A0-01	CC2D1A	ENST00000588932.1,ENST00000589138.1,ENST00000589679.1,ENST00000589606.1,ENST00000586955.1,ENST00000318003.7	chr19	14031372:14031481:14031562:14031735:14034145:14034212,	14031563	14031735	14031634	14031634	Frame_Shift_Del	A	-	p.K514fs
LIHC	TCGA-DD-A3A0-01	CC2D1A	ENST00000587508.1,ENST00000589138.1,ENST00000589606.1,ENST00000586955.1,ENST00000589224.1,ENST00000318003.7	chr19	14034391:14034419:14034507:14034624:14037329:14037403,	14034508	14034624	14034513	14034513	Frame_Shift_Del	A	-	p.E610fs
LIHC	TCGA-DD-A3A0-01	PODNL1	ENST00000588764.1	chr19	14044769:14044806:14045066:14045198:14046792:14046842,	14045067	14045198	14045175	14045175	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-DD-A3A0-01	PODNL1	ENST00000538371.2,ENST00000254320.3,ENST00000339560.5	chr19	14044769:14044806:14045066:14045223:14046533:14046636,	14045067	14045223	14045175	14045175	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-DD-A3A0-01	RFX1	ENST00000589760.1,ENST00000589239.1	chr19	14094297:14094407:14104336:14104707:14116914:14117074,	14104337	14104707	14104378	14104378	Frame_Shift_Del	G	-	p.P93fs
LIHC	TCGA-DD-A3A0-01	GIPC1	ENST00000345425.2,ENST00000393033.4,ENST00000586027.1,ENST00000393029.3,ENST00000393028.1,ENST00000587210.1,ENST00000591349.1	chr19	14590223:14590336:14591116:14591297:14591404:14591590,	14591117	14591297	14591135	14591135	Frame_Shift_Del	C	-	p.E213fs
LIHC	TCGA-DD-A3A0-01	SLC1A6	ENST00000600144.1,ENST00000221742.3,ENST00000430939.2	chr19	15061006:15061202:15063739:15063874:15064946:15065141,	15063740	15063874	15063846	15063846	Frame_Shift_Del	C	-	p.A402fs
LIHC	TCGA-DD-A3A0-01	SLC1A6	ENST00000221742.3,ENST00000430939.2	chr19	15064946:15065141:15067287:15067521:15072813:15073157,	15067288	15067521	15067330	15067330	Frame_Shift_Del	C	-	p.G312fs
LIHC	TCGA-DD-A3A0-01	ILVBL	ENST00000533747.1	chr19	15234185:15234387:15235735:15235880:15236466:15236477,15234185:15234387:15235735:15235880:15236190:15236444,	15235736	15235880	15235844	15235844	Frame_Shift_Del	G	-	p.P9fs
LIHC	TCGA-DD-A3A0-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15296067:15296219:15296297:15296490:15297688:15297799,	15296298	15296490	15296358	15296358	Frame_Shift_Del	G	-	p.P695fs
LIHC	TCGA-DD-A3A0-01	PGLYRP2	ENST00000340880.4	chr19	15582700:15582911:15586348:15587419:15590121:15590246,	15586349	15587419	15586358	15586358	Frame_Shift_Del	C	-	p.A375fs
LIHC	TCGA-DD-A3A0-01	CYP4F11	ENST00000591841.1,ENST00000248041.8,ENST00000402119.4	chr19	16025114:16025197:16025411:16025476:16025571:16025705,	16025412	16025476	16025437	16025437	Frame_Shift_Del	T	-	p.N430fs
LIHC	TCGA-DD-A3A0-01	CYP4F11	ENST00000591841.1,ENST00000248041.8,ENST00000402119.4	chr19	16025114:16025197:16025571:16025705:16032846:16032976,16025411:16025476:16025571:16025705:16032846:16032976,	16025572	16025705	16025640	16025640	Frame_Shift_Del	G	-	p.P394fs
LIHC	TCGA-DD-A3A0-01	TPM4	ENST00000586499.1,ENST00000588410.1,ENST00000587201.1,ENST00000586833.1,ENST00000592138.1,ENST00000300933.4,ENST00000538887.1,ENST00000344824.6	chr19	16186909:16186982:16197232:16197350:16198836:16198876,16192729:16192856:16197232:16197350:16198836:16198876,	16197233	16197350	16197347	16197347	Frame_Shift_Del	G	-	p.E128fs
LIHC	TCGA-DD-A3A0-01	AP1M1	ENST00000291439.3,ENST00000444449.2,ENST00000590756.1,ENST00000541844.1,ENST00000429941.2	chr19	16344303:16344429:16345009:16345085:16345223:16345575,	16345010	16345085	16345040	16345040	Frame_Shift_Del	G	-	p.G402fs
LIHC	TCGA-DD-A3A0-01	EPS15L1	ENST00000602022.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000602009.1,ENST00000592031.1,ENST00000535753.2	chr19	16532129:16532287:16535893:16536127:16539512:16539572,	16535894	16536127	16535987	16535987	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-DD-A3A0-01	EPS15L1	ENST00000602022.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000602009.1,ENST00000592031.1,ENST00000535753.2	chr19	16532129:16532287:16535893:16536127:16539512:16539572,	16535894	16536127	16535994	16535994	Frame_Shift_Del	G	-	p.P78fs
LIHC	TCGA-DD-A3A0-01	CALR3	ENST00000269881.3	chr19	16595973:16596068:16601177:16601381:16606561:16606663,	16601178	16601381	16601252	16601252	Frame_Shift_Del	C	-	p.G108fs
LIHC	TCGA-DD-A3A0-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16611644	16611644	Frame_Shift_Del	T	-	p.V14fs
LIHC	TCGA-DD-A3A0-01	NWD1	ENST00000379808.3,ENST00000549814.1,ENST00000438489.2,ENST00000524140.2,ENST00000523826.1,ENST00000552788.1,ENST00000518676.1,ENST00000339803.6	chr19	16890153:16890276:16899792:16900001:16902160:16902433,	16899793	16900001	16899825	16899825	Frame_Shift_Del	G	-	p.G922fs
LIHC	TCGA-DD-A3A0-01	CPAMD8	ENST00000443236.1	chr19	17017761:17017927:17025233:17025308:17025466:17025623,	17025234	17025308	17025292	17025292	Frame_Shift_Del	G	-	p.T1315fs
LIHC	TCGA-DD-A3A0-01	CPAMD8	ENST00000443236.1	chr19	17017761:17017927:17025233:17025308:17025466:17025623,	17025234	17025308	17025303	17025303	Frame_Shift_Del	C	-	p.G1311fs
LIHC	TCGA-DD-A3A0-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000601564.1,ENST00000598517.1,ENST00000595958.1,ENST00000593360.1	chr19	17169620:17169686:17170366:17170461:17170806:17170899,	17170367	17170461	17170374	17170374	Frame_Shift_Del	T	-	p.K77fs
LIHC	TCGA-DD-A3A0-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000601564.1,ENST00000598517.1,ENST00000595958.1,ENST00000593360.1	chr19	17169620:17169686:17170366:17170461:17170806:17170899,	17170367	17170461	17170383	17170383	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A3A0-01	HAUS8	ENST00000448593.2,ENST00000253669.5,ENST00000601564.1,ENST00000598517.1,ENST00000595958.1,ENST00000593360.1	chr19	17169620:17169686:17170366:17170461:17170806:17170899,	17170367	17170461	17170443	17170443	Frame_Shift_Del	T	-	p.K54fs
LIHC	TCGA-DD-A3A0-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000595618.1	chr19	17273159:17273276:17273797:17273932:17278752:17278874,	17273798	17273932	17273893	17273893	Frame_Shift_Del	G	-	p.L544fs
LIHC	TCGA-DD-A3A0-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000595618.1	chr19	17273797:17273932:17278752:17278874:17283145:17283287,	17278753	17278874	17278792	17278792	Frame_Shift_Del	G	-	p.G571fs
LIHC	TCGA-DD-A3A0-01	BABAM1	ENST00000598567.1,ENST00000596335.1,ENST00000447614.2,ENST00000601043.1,ENST00000601938.1,ENST00000601171.1,ENST00000601436.1,ENST00000599474.1,ENST00000602066.1,ENST00000448635.2,ENST00000359435.4,ENST00000598188.1,ENST00000599057.1	chr19	17379602:17379900:17382405:17382464:17384712:17384833,	17382406	17382464	17382460	17382460	Frame_Shift_Del	A	-	p.N114fs
LIHC	TCGA-DD-A3A0-01	ABHD8	ENST00000247706.3	chr19	17402939:17403640:17405096:17405313:17405483:17405654,	17405097	17405313	17405269	17405269	Frame_Shift_Del	T	-	p.K326fs
LIHC	TCGA-DD-A3A0-01	MVB12A	ENST00000528911.1,ENST00000600514.1,ENST00000529939.1,ENST00000543795.1,ENST00000317040.7	chr19	17531346:17531443:17533140:17533267:17534501:17534608,17531346:17531443:17533140:17533267:17534306:17534426,	17533141	17533267	17533185	17533185	Frame_Shift_Del	C	-	p.P111fs
LIHC	TCGA-DD-A3A0-01	PDE4C	ENST00000597360.1,ENST00000262805.12,ENST00000594465.3,ENST00000594617.3,ENST00000355502.3,ENST00000599188.1,ENST00000610023.1,ENST00000447275.3	chr19	18331914:18331988:18332070:18332107:18332941:18333133,	18332071	18332107	18332077	18332077	Frame_Shift_Del	A	-	p.F155fs
LIHC	TCGA-DD-A3A0-01	PGPEP1	ENST00000604499.2,ENST00000269919.6,ENST00000595066.1	chr19	18453668:18453721:18466704:18466821:18468192:18468425,	18466705	18466821	18466712	18466712	Frame_Shift_Del	A	-	p.E32fs
LIHC	TCGA-DD-A3A0-01	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507283	18507283	Frame_Shift_Del	G	-	p.A164fs
LIHC	TCGA-DD-A3A0-01	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507467	18507467	Frame_Shift_Del	C	-	p.A103fs
LIHC	TCGA-DD-A3A0-01	ELL	ENST00000262809.4,ENST00000596124.3	chr19	18576221:18576385:18576606:18576728:18583644:18583692,	18576607	18576728	18576658	18576658	Frame_Shift_Del	C	-	p.G85fs
LIHC	TCGA-DD-A3A0-01	FKBP8	ENST00000453489.2,ENST00000222308.4,ENST00000608443.1,ENST00000601844.1,ENST00000544835.3,ENST00000597960.3,ENST00000610101.1,ENST00000596558.2	chr19	18643495:18643605:18644079:18644157:18648410:18648514,	18644080	18644157	18644139	18644139	Frame_Shift_Del	C	-	p.E322fs
LIHC	TCGA-DD-A3A0-01	KXD1	ENST00000595073.1,ENST00000599000.1,ENST00000600654.1,ENST00000601630.1,ENST00000222307.4	chr19	18668707:18668724:18672845:18672967:18675678:18675800,	18672846	18672967	18672955	18672955	Frame_Shift_Del	C	-	p.A30fs
LIHC	TCGA-DD-A3A0-01	CRLF1	ENST00000392386.3	chr19	18709241:18709411:18709581:18709711:18710374:18710656,	18709582	18709711	18709625	18709625	Frame_Shift_Del	C	-	p.E162fs
LIHC	TCGA-DD-A3A0-01	CRTC1	ENST00000338797.6	chr19	18853719:18853836:18854917:18854965:18856632:18856770,	18854918	18854965	18854932	18854932	Frame_Shift_Del	G	-	p.L86fs
LIHC	TCGA-DD-A3A0-01	ARMC6	ENST00000537263.1,ENST00000269932.6,ENST00000536098.1,ENST00000392336.3,ENST00000538663.1,ENST00000535612.1,ENST00000535758.1,ENST00000392335.2,ENST00000541898.1,ENST00000540792.1,ENST00000541725.1,ENST00000539985.1	chr19	19153524:19153686:19154800:19154883:19162430:19162438,	19154801	19154883	19154855	19154855	Frame_Shift_Del	C	-	p.S84fs
LIHC	TCGA-DD-A3A0-01	NCAN	ENST00000252575.6	chr19	19327755:19327835:19329723:19330125:19334829:19335004,	19329724	19330125	19329859	19329859	Frame_Shift_Del	C	-	p.A70fs
LIHC	TCGA-DD-A3A0-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338819	19338819	Frame_Shift_Del	C	-	p.A797fs
LIHC	TCGA-DD-A3A0-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19339422	19339422	Frame_Shift_Del	C	-	p.T998fs
LIHC	TCGA-DD-A3A0-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19344597:19344714:19345791:19345905:19349061:19349220,	19345792	19345905	19345884	19345884	Frame_Shift_Del	G	-	p.G1078fs
LIHC	TCGA-DD-A3A0-01	SUGP1	ENST00000247001.5,ENST00000591007.2,ENST00000589144.1,ENST00000588731.2,ENST00000587119.1	chr19	19390993:19391100:19407797:19408153:19413073:19413185,	19407798	19408153	19407931	19407931	Frame_Shift_Del	G	-	p.P370fs
LIHC	TCGA-DD-A3A0-01	LPAR2	ENST00000407877.3	chr19	19734477:19735378:19737351:19738093:19738900:19738976,	19737352	19738093	19737811	19737811	Frame_Shift_Del	G	-	p.R95fs
LIHC	TCGA-DD-A3A0-01	GMIP	ENST00000587713.1	chr19	19745903:19746022:19746223:19746530:19747515:19747596,	19746224	19746530	19746279	19746279	Frame_Shift_Del	G	-	p.P502fs
LIHC	TCGA-DD-A3A0-01	GMIP	ENST00000587238.1,ENST00000445806.2	chr19	19745903:19746022:19746223:19746378:19747515:19747596,	19746224	19746378	19746279	19746279	Frame_Shift_Del	G	-	p.P502fs
LIHC	TCGA-DD-A3A0-01	ATP13A1	ENST00000357324.6,ENST00000474955.1,ENST00000291503.5,ENST00000492774.1,ENST00000455627.1	chr19	19767910:19767958:19768144:19768217:19770409:19770553,	19768145	19768217	19768160	19768160	Frame_Shift_Del	G	-	p.P245fs
LIHC	TCGA-DD-A3A0-01	CCNE1	ENST00000444983.2,ENST00000576532.1,ENST00000262643.3,ENST00000575243.1	chr19	30308312:30308448:30311608:30311755:30312628:30312675,	30311609	30311755	30311688	30311688	Frame_Shift_Del	A	-	p.E181fs
LIHC	TCGA-DD-A3A0-01	ANKRD27	ENST00000306065.4	chr19	33095168:33095330:33096740:33096860:33098540:33098738,	33096741	33096860	33096825	33096825	Frame_Shift_Del	G	-	p.P803fs
LIHC	TCGA-DD-A3A0-01	ANKRD27	ENST00000306065.4	chr19	33106563:33106686:33108494:33108539:33110165:33110285,	33108495	33108539	33108531	33108531	Frame_Shift_Del	T	-	p.K672fs
LIHC	TCGA-DD-A3A0-01	ANKRD27	ENST00000306065.4,ENST00000591100.2	chr19	33122307:33122400:33130261:33130394:33131212:33131291,	33130262	33130394	33130344	33130344	Frame_Shift_Del	T	-	p.K345fs
LIHC	TCGA-DD-A3A0-01	ANKRD27	ENST00000587352.1,ENST00000306065.4	chr19	33131212:33131291:33132929:33133051:33134028:33134105,	33132930	33133051	33133029	33133029	Frame_Shift_Del	T	-	p.R269fs
LIHC	TCGA-DD-A3A0-01	TDRD12	ENST00000444215.2,ENST00000421545.2	chr19	33229761:33229898:33233686:33233806:33239381:33239437,	33233687	33233806	33233732	33233732	Frame_Shift_Del	A	-	p.A122fs
LIHC	TCGA-DD-A3A0-01	SLC7A9	ENST00000587772.1,ENST00000590465.1,ENST00000590341.1,ENST00000023064.4,ENST00000592232.1	chr19	33321525:33321590:33324054:33324229:33333073:33333223,	33324055	33324229	33324183	33324183	Frame_Shift_Del	A	-	p.L424fs
LIHC	TCGA-DD-A3A0-01	GPATCH1	ENST00000170564.2	chr19	33597600:33597805:33600622:33600922:33602629:33602808,	33600623	33600922	33600656	33600656	Frame_Shift_Del	A	-	p.Q440fs
LIHC	TCGA-DD-A3A0-01	GPATCH1	ENST00000170564.2	chr19	33602629:33602808:33603391:33603519:33604672:33604809,	33603392	33603519	33603494	33603494	Frame_Shift_Del	T	-	p.F623fs
LIHC	TCGA-DD-A3A0-01	SLC7A10	ENST00000253188.4	chr19	33701372:33701522:33701707:33701804:33702130:33702234,	33701708	33701804	33701719	33701719	Frame_Shift_Del	G	-	p.L369fs
LIHC	TCGA-DD-A3A0-01	KIAA0355	ENST00000299505.6	chr19	34821093:34821252:34824608:34824706:34830771:34830897,	34824609	34824706	34824652	34824652	Frame_Shift_Del	C	-	p.A436fs
LIHC	TCGA-DD-A3A0-01	GPI	ENST00000415930.3	chr19	34859553:34859607:34868639:34868786:34869838:34869910,	34868640	34868786	34868733	34868733	Frame_Shift_Del	A	-	p.K205fs
LIHC	TCGA-DD-A3A0-01	GRAMD1A	ENST00000317991.5,ENST00000599564.1,ENST00000411896.2	chr19	35502387:35502458:35504159:35504272:35504444:35504595,	35504160	35504272	35504248	35504248	Frame_Shift_Del	C	-	p.S319fs
LIHC	TCGA-DD-A3A0-01	GRAMD1A	ENST00000504615.2,ENST00000598118.1,ENST00000317991.5,ENST00000599564.1,ENST00000411896.2,ENST00000600231.1	chr19	35514201:35514247:35514330:35514451:35516952:35517373,	35514331	35514451	35514337	35514337	Frame_Shift_Del	C	-	p.F739fs
LIHC	TCGA-DD-A3A0-01	HPN	ENST00000593305.1,ENST00000599363.1,ENST00000262626.2,ENST00000392226.1,ENST00000541345.2	chr19	35551263:35551416:35551530:35551721:35556153:35556249,	35551531	35551721	35551654	35551654	Frame_Shift_Del	C	-	p.D248fs
LIHC	TCGA-DD-A3A0-01	USF2	ENST00000379134.3	chr19	35760348:35760395:35760483:35760602:35761661:35761708,	35760484	35760602	35760590	35760590	Frame_Shift_Del	A	-	p.T72fs
LIHC	TCGA-DD-A3A0-01	DMKN	ENST00000440396.1,ENST00000424570.2,ENST00000451297.2,ENST00000339686.3,ENST00000447113.2,ENST00000418261.1	chr19	36002412:36002495:36002664:36002715:36003322:36003379,	36002665	36002715	36002702	36002702	Frame_Shift_Del	G	-	p.P234fs
LIHC	TCGA-DD-A3A0-01	SBSN	ENST00000518157.1	chr19	36015760:36015826:36017545:36017779:36018808:36019123,	36017546	36017779	36017584	36017584	Frame_Shift_Del	C	-	p.V534fs
LIHC	TCGA-DD-A3A0-01	PRODH2	ENST00000301175.3	chr19	36297331:36297498:36297576:36297732:36297942:36298023,	36297577	36297732	36297674	36297674	Frame_Shift_Del	G	-	p.P322fs
LIHC	TCGA-DD-A3A0-01	KIRREL2	ENST00000360202.5,ENST00000262625.7,ENST00000586102.3,ENST00000592409.1	chr19	36348007:36348082:36348246:36348396:36349309:36349459,	36348247	36348396	36348375	36348375	Frame_Shift_Del	G	-	p.G65fs
LIHC	TCGA-DD-A3A0-01	APLP1	ENST00000221891.4,ENST00000590561.1	chr19	36368619:36368727:36368983:36369010:36369485:36369556,	36368984	36369010	36369006	36369006	Frame_Shift_Del	A	-	p.P525fs
LIHC	TCGA-DD-A3A0-01	APLP1	ENST00000588808.1,ENST00000537454.2,ENST00000586861.1	chr19	36368619:36368727:36368986:36369010:36369485:36369556,	36368987	36369010	36369006	36369006	Frame_Shift_Del	A	-	p.P525fs
LIHC	TCGA-DD-A3A0-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431480	36431480	Frame_Shift_Del	C	-	p.P389fs
LIHC	TCGA-DD-A3A0-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431521	36431521	Frame_Shift_Del	C	-	p.D398fs
LIHC	TCGA-DD-A3A0-01	THAP8	ENST00000538849.1,ENST00000522483.2	chr19	36526049:36526494:36530224:36530620:36545036:36545166,	36530225	36530620	36530492	36530492	Frame_Shift_Del	G	-	p.P135fs
LIHC	TCGA-DD-A3A0-01	ZNF565	ENST00000392173.2	chr19	36685931:36686058:36692878:36692952:36705523:36705557,36685931:36686058:36692878:36692952:36705789:36705983,	36692879	36692952	36692884	36692884	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-DD-A3A0-01	ZNF566	ENST00000434377.2,ENST00000424129.2,ENST00000452939.1	chr19	36963812:36963908:36964233:36964360:36967450:36967518,	36964234	36964360	36964347	36964347	Frame_Shift_Del	A	-	p.F8fs
LIHC	TCGA-DD-A3A0-01	ZNF573	ENST00000590414.2,ENST00000378445.4	chr19	38230961:38231095:38260644:38260737:38262203:38262330,	38260645	38260737	38260648	38260648	Frame_Shift_Del	T	-	p.T10fs
LIHC	TCGA-DD-A3A0-01	DPF1	ENST00000438060.1,ENST00000355526.4,ENST00000414789.1,ENST00000416611.1,ENST00000412732.1,ENST00000418517.1,ENST00000456296.1	chr19	38706992:38707043:38708099:38708231:38708437:38708516,	38708100	38708231	38708111	38708111	Frame_Shift_Del	T	-	p.N241fs
LIHC	TCGA-DD-A3A0-01	YIF1B	ENST00000586319.1	chr19	38796001:38796147:38798067:38798392:38799431:38799489,	38798068	38798392	38798300	38798300	Frame_Shift_Del	A	-	p.V180fs
LIHC	TCGA-DD-A3A0-01	YIF1B	ENST00000592246.1,ENST00000339413.6,ENST00000329420.8,ENST00000392124.3,ENST00000337679.8,ENST00000591784.1,ENST00000591755.1,ENST00000589247.1,ENST00000592694.1	chr19	38798110:38798161:38798236:38798392:38799431:38799489,	38798237	38798392	38798300	38798300	Frame_Shift_Del	A	-	p.V180fs
LIHC	TCGA-DD-A3A0-01	CATSPERG	ENST00000410018.1,ENST00000215069.4,ENST00000409235.3,ENST00000312265.5	chr19	38858687:38858777:38860611:38860704:38860798:38860898,	38860612	38860704	38860668	38860668	Frame_Shift_Del	C	-	p.A1026fs
LIHC	TCGA-DD-A3A0-01	CATSPERG	ENST00000471517.1	chr19	38858687:38858777:38860611:38860713:38860798:38860898,	38860612	38860713	38860668	38860668	Frame_Shift_Del	C	-	p.A1026fs
LIHC	TCGA-DD-A3A0-01	GGN	ENST00000334928.6	chr19	38874992:38875169:38876060:38877920:38878400:38878462,	38876061	38877920	38877672	38877672	Frame_Shift_Del	A	-	p.L77fs
LIHC	TCGA-DD-A3A0-01	GGN	ENST00000334928.6	chr19	38874992:38875169:38876060:38877920:38878400:38878462,	38876061	38877920	38877712	38877712	Frame_Shift_Del	G	-	p.R64fs
LIHC	TCGA-DD-A3A0-01	SPRED3	ENST00000587947.1	chr19	38880694:38880792:38880938:38881119:38882585:38882754,	38880939	38881119	38881005	38881005	Frame_Shift_Del	G	-	p.V21fs
LIHC	TCGA-DD-A3A0-01	FAM98C	ENST00000588262.1	chr19	38896162:38896275:38897549:38897717:38899390:38899680,38894304:38894334:38897549:38897717:38899390:38899680,	38897550	38897717	38897602	38897602	Frame_Shift_Del	C	-	p.T268fs
LIHC	TCGA-DD-A3A0-01	FAM98C	ENST00000588348.1	chr19	38896014:38896061:38896158:38897717:38899390:38899680,	38896159	38897717	38897602	38897602	Frame_Shift_Del	C	-	p.T268fs
LIHC	TCGA-DD-A3A0-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39002210:39002250:39002711:39002772:39002884:39003123,	39002712	39002772	39002760	39002760	Frame_Shift_Del	C	-	p.S3074fs
LIHC	TCGA-DD-A3A0-01	RYR1	ENST00000601514.1	chr19	39018729:39018834:39018945:39019058:39019238:39019335,	39018946	39019058	39018989	39018989	Frame_Shift_Del	T	-	p.L3619fs
LIHC	TCGA-DD-A3A0-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39058412:39058557:39061246:39061333:39062658:39062719,	39061247	39061333	39061265	39061265	Frame_Shift_Del	T	-	p.F4555fs
LIHC	TCGA-DD-A3A0-01	MAP4K1	ENST00000589130.1,ENST00000423454.2,ENST00000591921.1,ENST00000585583.1,ENST00000396857.2,ENST00000591517.1	chr19	39096048:39096131:39096207:39096370:39096812:39096855,	39096208	39096370	39096301	39096301	Frame_Shift_Del	C	-	p.V424fs
LIHC	TCGA-DD-A3A0-01	LGALS4	ENST00000596628.1,ENST00000595278.1,ENST00000597153.1,ENST00000600070.1,ENST00000307751.4	chr19	39294508:39294535:39297100:39297235:39299383:39299435,	39297101	39297235	39297172	39297172	Frame_Shift_Del	G	-	p.H135fs
LIHC	TCGA-DD-A3A0-01	RINL	ENST00000598904.1,ENST00000591812.1,ENST00000340740.3	chr19	39361717:39361867:39362286:39362351:39362437:39362510,	39362287	39362351	39362332	39362332	Frame_Shift_Del	G	-	p.L24fs
LIHC	TCGA-DD-A3A0-01	SAMD4B	ENST00000598913.1,ENST00000314471.6,ENST00000596368.1	chr19	39860731:39860765:39866289:39866529:39867076:39867186,	39866290	39866529	39866351	39866351	Frame_Shift_Del	C	-	p.S243fs
LIHC	TCGA-DD-A3A0-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39915348	39915348	Frame_Shift_Del	A	-	p.Q1163fs
LIHC	TCGA-DD-A3A0-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961077	39961077	Frame_Shift_Del	G	-	p.G532fs
LIHC	TCGA-DD-A3A0-01	TIMM50	ENST00000314349.4,ENST00000594583.1,ENST00000607714.1,ENST00000599733.1	chr19	39972522:39972673:39976183:39976242:39976327:39976443,39973774:39973796:39976183:39976242:39976327:39976443,	39976184	39976242	39976188	39976188	Frame_Shift_Del	A	-	p.P209fs
LIHC	TCGA-DD-A3A0-01	DLL3	ENST00000600437.1,ENST00000205143.4,ENST00000356433.5	chr19	39993454:39993697:39994710:39994928:39995868:39996091,	39994711	39994928	39994844	39994844	Frame_Shift_Del	C	-	p.G262fs
LIHC	TCGA-DD-A3A0-01	FBL	ENST00000594443.1	chr19	40329674:40329845:40331053:40331155:40336930:40336969,	40331054	40331155	40331098	40331098	Frame_Shift_Del	T	-	p.N80fs
LIHC	TCGA-DD-A3A0-01	MAP3K10	ENST00000594951.1,ENST00000253055.3	chr19	40711027:40711203:40711817:40712064:40715009:40715109,	40711818	40712064	40711977	40711977	Frame_Shift_Del	C	-	p.P450fs
LIHC	TCGA-DD-A3A0-01	AKT2	ENST00000311278.6	chr19	40741169:40741257:40741796:40742011:40742163:40742292,40741169:40741257:40741796:40742011:40743875:40743973,	40741797	40742011	40741984	40741984	Frame_Shift_Del	C	-	p.A330fs
LIHC	TCGA-DD-A3A0-01	AKT2	ENST00000496089.2	chr19	40741169:40741257:40741796:40742292:40743875:40743973,	40741797	40742292	40741984	40741984	Frame_Shift_Del	C	-	p.A330fs
LIHC	TCGA-DD-A3A0-01	SHKBP1	ENST00000600718.1,ENST00000600320.1	chr19	41092801:41092850:41094529:41094685:41096638:41096759,41092801:41092850:41094529:41094685:41094987:41095084,41092801:41092850:41094529:41094685:41096635:41096712,	41094530	41094685	41094630	41094630	Frame_Shift_Del	C	-	p.I479fs
LIHC	TCGA-DD-A3A0-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000396819.3,ENST00000598717.1,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000602240.1	chr19	41117279:41117300:41117764:41117890:41117978:41118098,	41117765	41117890	41117787	41117787	Frame_Shift_Del	C	-	p.S759fs
LIHC	TCGA-DD-A3A0-01	LTBP4	ENST00000595665.1,ENST00000597071.1,ENST00000600499.1,ENST00000593463.1	chr19	41120220:41120352:41122794:41122926:41123005:41123094,41120220:41120352:41122794:41122926:41125251:41125281,	41122795	41122926	41122911	41122911	Frame_Shift_Del	G	-	p.G1046fs
LIHC	TCGA-DD-A3A0-01	LTBP4	ENST00000594448.1	chr19	41120220:41120352:41122794:41122948:41125251:41125281,	41122795	41122948	41122911	41122911	Frame_Shift_Del	G	-	p.G1046fs
LIHC	TCGA-DD-A3A0-01	CYP2F1	ENST00000331105.2,ENST00000531409.1,ENST00000532164.2	chr19	41626251:41626401:41627362:41627523:41627861:41628038,	41627363	41627523	41627376	41627376	Frame_Shift_Del	C	-	p.D166fs
LIHC	TCGA-DD-A3A0-01	AXL	ENST00000359092.3,ENST00000599659.1,ENST00000594880.1,ENST00000301178.4	chr19	41726540:41726763:41727050:41727151:41727784:41727901,	41727051	41727151	41727093	41727093	Frame_Shift_Del	T	-	p.C117fs
LIHC	TCGA-DD-A3A0-01	AXL	ENST00000593513.1,ENST00000359092.3,ENST00000599659.1,ENST00000301178.4	chr19	41743848:41744059:41744374:41744514:41745068:41745219,	41744375	41744514	41744377	41744377	Frame_Shift_Del	C	-	p.P333fs
LIHC	TCGA-DD-A3A0-01	AXL	ENST00000593513.1,ENST00000359092.3,ENST00000599659.1,ENST00000301178.4	chr19	41743848:41744059:41744374:41744514:41745068:41745219,	41744375	41744514	41744385	41744385	Frame_Shift_Del	C	-	p.G335fs
LIHC	TCGA-DD-A3A0-01	HNRNPUL1	ENST00000595806.1,ENST00000378215.4,ENST00000352456.3	chr19	41810147:41810166:41811550:41811772:41812353:41812830,	41811551	41811772	41811636	41811636	Frame_Shift_Del	C	-	p.A773fs
LIHC	TCGA-DD-A3A0-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000595018.1,ENST00000263367.3,ENST00000593587.1	chr19	41810147:41810166:41811580:41811772:41812353:41812830,	41811581	41811772	41811636	41811636	Frame_Shift_Del	C	-	p.A773fs
LIHC	TCGA-DD-A3A0-01	CCDC97	ENST00000269967.3	chr19	41822288:41822744:41825478:41825757:41826245:41826375,	41825479	41825757	41825611	41825611	Frame_Shift_Del	C	-	p.S212fs
LIHC	TCGA-DD-A3A0-01	CEACAM21	ENST00000482870.2,ENST00000187608.9	chr19	42083551:42083911:42085705:42085981:42090702:42090796,	42085706	42085981	42085814	42085814	Frame_Shift_Del	T	-	p.I50fs
LIHC	TCGA-DD-A3A0-01	CEACAM21	ENST00000457737.1	chr19	42083551:42083911:42085622:42085981:42090702:42090796,	42085623	42085981	42085814	42085814	Frame_Shift_Del	T	-	p.I50fs
LIHC	TCGA-DD-A3A0-01	CEACAM4	ENST00000221954.2	chr19	42126947:42127000:42128023:42128141:42131974:42132334,	42128024	42128141	42128055	42128055	Frame_Shift_Del	C	-	p.V171fs
LIHC	TCGA-DD-A3A0-01	RPS19	ENST00000221975.2	chr19	42364326:42364359:42364854:42364915:42365180:42365281,	42364855	42364915	42364911	42364911	Frame_Shift_Del	A	-	p.K24fs
LIHC	TCGA-DD-A3A0-01	RPS19	ENST00000601492.1,ENST00000598466.1	chr19	42364326:42364359:42364844:42364915:42365180:42365281,	42364845	42364915	42364911	42364911	Frame_Shift_Del	A	-	p.K24fs
LIHC	TCGA-DD-A3A0-01	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000473086.2,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42490267:42490381:42492087:42492291:42492469:42492529,	42492088	42492291	42492198	42492198	Frame_Shift_Del	A	-	p.C96fs
LIHC	TCGA-DD-A3A0-01	GSK3A	ENST00000398249.4,ENST00000453535.1,ENST00000222330.3	chr19	42736208:42736301:42736647:42736834:42737261:42737357,	42736648	42736834	42736770	42736770	Frame_Shift_Del	G	-	p.P306fs
LIHC	TCGA-DD-A3A0-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795886	42795886	Frame_Shift_Del	C	-	p.P1869fs
LIHC	TCGA-DD-A3A0-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42862295:42862459:42862938:42863106:42863249:42863394,	42862939	42863106	42863012	42863012	Frame_Shift_Del	G	-	p.W1683fs
LIHC	TCGA-DD-A3A0-01	LIPE	ENST00000244289.4	chr19	42909536:42909713:42910312:42910540:42911325:42911378,	42910313	42910540	42910523	42910523	Frame_Shift_Del	T	-	p.I719fs
LIHC	TCGA-DD-A3A0-01	LIPE	ENST00000602000.1,ENST00000244289.4	chr19	42911551:42911620:42911757:42911943:42912127:42912273,	42911758	42911943	42911851	42911851	Frame_Shift_Del	G	-	p.P583fs
LIHC	TCGA-DD-A3A0-01	PSG8	ENST00000306511.4	chr19	43262153:43262432:43268067:43268433:43269669:43269814,	43268068	43268433	43268362	43268362	Frame_Shift_Del	A	-	p.S46fs
LIHC	TCGA-DD-A3A0-01	PSG6	ENST00000402603.4,ENST00000292125.2,ENST00000402456.4	chr19	43414731:43415010:43420276:43420639:43421880:43422039,	43420277	43420639	43420490	43420490	Frame_Shift_Del	T	-	p.M72fs
LIHC	TCGA-DD-A3A0-01	PSG4	ENST00000244295.9	chr19	43702409:43702427:43708037:43708403:43709624:43709703,	43708038	43708403	43708258	43708258	Frame_Shift_Del	C	-	p.G70fs
LIHC	TCGA-DD-A3A0-01	BCL3	ENST00000403534.3,ENST00000164227.5,ENST00000444487.1,ENST00000464319.1	chr19	45259488:45259597:45260273:45260478:45260583:45260621,	45260274	45260478	45260345	45260345	Frame_Shift_Del	C	-	p.S197fs
LIHC	TCGA-DD-A3A0-01	RELB	ENST00000221452.8,ENST00000505236.1,ENST00000540120.1	chr19	45515193:45515534:45525310:45525468:45528586:45528678,	45525311	45525468	45525326	45525326	Frame_Shift_Del	G	-	p.G174fs
LIHC	TCGA-DD-A3A0-01	TRAPPC6A	ENST00000588062.1,ENST00000585934.1,ENST00000006275.4,ENST00000592647.1	chr19	45666398:45666481:45667173:45667267:45667421:45667505,	45667174	45667267	45667183	45667183	Frame_Shift_Del	G	-	p.L161fs
LIHC	TCGA-DD-A3A0-01	TRAPPC6A	ENST00000588062.1,ENST00000585934.1,ENST00000006275.4,ENST00000592647.1	chr19	45667173:45667267:45667421:45667505:45668110:45668228,	45667422	45667505	45667472	45667472	Frame_Shift_Del	G	-	p.L118fs
LIHC	TCGA-DD-A3A0-01	MARK4	ENST00000590909.1,ENST00000588533.1,ENST00000587566.1,ENST00000262891.4,ENST00000300843.4	chr19	45766370:45766424:45766576:45766625:45767941:45768007,	45766577	45766625	45766612	45766612	Frame_Shift_Del	C	-	p.N114fs
LIHC	TCGA-DD-A3A0-01	MARK4	ENST00000588621.1,ENST00000592207.1,ENST00000262891.4,ENST00000300843.4	chr19	45781238:45781300:45781773:45781873:45783631:45783741,	45781774	45781873	45781855	45781855	Frame_Shift_Del	G	-	p.G330fs
LIHC	TCGA-DD-A3A0-01	MARK4	ENST00000300843.4	chr19	45801151:45801212:45801400:45801480:45803068:45803113,	45801401	45801480	45801420	45801420	Frame_Shift_Del	A	-	p.K633fs
LIHC	TCGA-DD-A3A0-01	MARK4	ENST00000300843.4	chr19	45801151:45801212:45801400:45801480:45803068:45803113,	45801401	45801480	45801462	45801462	Frame_Shift_Del	C	-	p.P647fs
LIHC	TCGA-DD-A3A0-01	ERCC2	ENST00000586856.1,ENST00000485403.2,ENST00000586441.1,ENST00000391945.4,ENST00000391941.2,ENST00000391940.4,ENST00000586131.1	chr19	45868299:45868416:45871887:45872001:45872187:45872250,	45871888	45872001	45871907	45871907	Frame_Shift_Del	T	-	p.N114fs
LIHC	TCGA-DD-A3A0-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996476	45996476	Frame_Shift_Del	T	-	p.K51fs
LIHC	TCGA-DD-A3A0-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996481	45996481	Frame_Shift_Del	C	-	p.A50fs
LIHC	TCGA-DD-A3A0-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996513	45996513	Frame_Shift_Del	G	-	p.P39fs
LIHC	TCGA-DD-A3A0-01	EML2	ENST00000590819.1	chr19	46124811:46124895:46127976:46128076:46129962:46130010,46124464:46124590:46127976:46128076:46129962:46130010,	46127977	46128076	46128010	46128010	Frame_Shift_Del	C	-	p.D417fs
LIHC	TCGA-DD-A3A0-01	DMPK	ENST00000458663.2,ENST00000600757.1,ENST00000596686.1	chr19	46274228:46274318:46274607:46274654:46274825:46274923,46274228:46274314:46274607:46274654:46274825:46274923,	46274608	46274654	46274622	46274622	Frame_Shift_Del	C	-	p.D550fs
LIHC	TCGA-DD-A3A0-01	SYMPK	ENST00000593504.1,ENST00000600237.1,ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46333311:46333462:46334641:46334846:46338335:46338486,	46334642	46334846	46334706	46334706	Frame_Shift_Del	G	-	p.L512fs
LIHC	TCGA-DD-A3A0-01	SYMPK	ENST00000593504.1,ENST00000598896.1,ENST00000600237.1,ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46341850:46341873:46345507:46345747:46347287:46347458,	46345508	46345747	46345609	46345609	Frame_Shift_Del	C	-	p.G329fs
LIHC	TCGA-DD-A3A0-01	HIF3A	ENST00000528563.1	chr19	46815417:46815524:46815762:46815910:46823699:46823818,46815417:46815524:46815762:46815910:46823703:46823818,	46815763	46815910	46815899	46815899	Frame_Shift_Del	T	-	p.H282fs
LIHC	TCGA-DD-A3A0-01	PRKD2	ENST00000602155.1,ENST00000291281.4,ENST00000601806.1,ENST00000597390.1,ENST00000597589.1,ENST00000600194.1,ENST00000433867.1	chr19	47178289:47178375:47181652:47181920:47184906:47185005,	47181653	47181920	47181778	47181778	Frame_Shift_Del	C	-	p.G738fs
LIHC	TCGA-DD-A3A0-01	PRKD2	ENST00000599019.1,ENST00000595515.1	chr19	47178289:47178375:47181622:47181920:47184906:47185005,	47181623	47181920	47181778	47181778	Frame_Shift_Del	C	-	p.G738fs
LIHC	TCGA-DD-A3A0-01	STRN4	ENST00000595357.1,ENST00000435164.2,ENST00000391910.3	chr19	47228737:47228905:47230708:47230824:47231150:47231216,	47230709	47230824	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
LIHC	TCGA-DD-A3A0-01	STRN4	ENST00000601631.2,ENST00000263280.6,ENST00000539396.1,ENST00000594357.2	chr19	47228737:47228905:47230708:47230803:47231150:47231216,	47230709	47230803	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
LIHC	TCGA-DD-A3A0-01	STRN4	ENST00000600358.3,ENST00000602223.1	chr19	47228737:47228905:47230708:47230948:47231150:47231216,	47230709	47230948	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
LIHC	TCGA-DD-A3A0-01	SLC1A5	ENST00000594991.1,ENST00000412532.2,ENST00000542575.2,ENST00000593713.1,ENST00000598022.1	chr19	47285692:47285806:47287353:47287401:47287773:47287816,	47287354	47287401	47287365	47287365	Frame_Shift_Del	T	-	p.T216fs
LIHC	TCGA-DD-A3A0-01	NPAS1	ENST00000602212.1,ENST00000439365.2,ENST00000449844.2,ENST00000594670.1	chr19	47539221:47539387:47542293:47542409:47542664:47542822,	47542294	47542409	47542378	47542378	Frame_Shift_Del	G	-	p.R258fs
LIHC	TCGA-DD-A3A0-01	DHX34	ENST00000328771.4	chr19	47858295:47858607:47861122:47861377:47863224:47863327,	47861123	47861377	47861188	47861188	Frame_Shift_Del	T	-	p.P361fs
LIHC	TCGA-DD-A3A0-01	DHX34	ENST00000328771.4,ENST00000486327.2,ENST00000460681.1	chr19	47880356:47880463:47882966:47883242:47884072:47884249,	47882967	47883242	47883188	47883188	Frame_Shift_Del	C	-	p.S976fs
LIHC	TCGA-DD-A3A0-01	ZNF541	ENST00000391901.3,ENST00000314121.4,ENST00000448976.1,ENST00000263351.5,ENST00000595558.1	chr19	48024480:48024634:48024735:48024911:48025110:48025251,	48024736	48024911	48024893	48024893	Frame_Shift_Del	C	-	p.E1263fs
LIHC	TCGA-DD-A3A0-01	ELSPBP1	ENST00000339841.2	chr19	48511907:48511994:48519149:48519296:48522975:48523134,48517427:48517565:48519149:48519296:48522975:48523134,	48519150	48519296	48519278	48519278	Frame_Shift_Del	A	-	p.K113fs
LIHC	TCGA-DD-A3A0-01	ELSPBP1	ENST00000593782.1,ENST00000596043.1,ENST00000339841.2	chr19	48519149:48519296:48522975:48523134:48525426:48525500,	48522976	48523134	48523013	48523013	Frame_Shift_Del	C	-	p.F131fs
LIHC	TCGA-DD-A3A0-01	PLA2G4C	ENST00000599111.1,ENST00000599921.1,ENST00000596510.1,ENST00000413144.2,ENST00000354276.3	chr19	48556253:48556404:48558134:48558306:48565254:48565409,	48558135	48558306	48558214	48558214	Frame_Shift_Del	G	-	p.P450fs
LIHC	TCGA-DD-A3A0-01	PLA2G4C	ENST00000601946.1,ENST00000599111.1,ENST00000599921.1,ENST00000413144.2,ENST00000354276.3,ENST00000599300.1	chr19	48571047:48571143:48578023:48578131:48581027:48581081,	48578024	48578131	48578034	48578034	Frame_Shift_Del	G	-	p.P332fs
LIHC	TCGA-DD-A3A0-01	LIG1	ENST00000601091.1,ENST00000594067.1,ENST00000263274.7,ENST00000536218.1,ENST00000594759.1,ENST00000427526.2,ENST00000597901.1	chr19	48639010:48639036:48639290:48639382:48640264:48640341,	48639291	48639382	48639327	48639327	Frame_Shift_Del	G	-	p.L463fs
LIHC	TCGA-DD-A3A0-01	CARD8	ENST00000518622.1,ENST00000447740.2,ENST00000521613.1,ENST00000517510.1,ENST00000359009.4,ENST00000522773.1,ENST00000519646.1,ENST00000519940.1,ENST00000520153.1,ENST00000521415.1,ENST00000391898.3,ENST00000522051.1,ENST00000357778.5	chr19	48718596:48718641:48724986:48725112:48733694:48733755,48722127:48722269:48724986:48725112:48733694:48733755,	48724987	48725112	48725046	48725046	Frame_Shift_Del	G	-	p.L368fs
LIHC	TCGA-DD-A3A0-01	CARD8	ENST00000518622.1,ENST00000447740.2,ENST00000521613.1,ENST00000517510.1,ENST00000359009.4,ENST00000522773.1,ENST00000519646.1,ENST00000519940.1,ENST00000520153.1,ENST00000521415.1,ENST00000391898.3,ENST00000522051.1,ENST00000357778.5	chr19	48718596:48718641:48724986:48725112:48733694:48733755,48722127:48722269:48724986:48725112:48733694:48733755,	48724987	48725112	48725057	48725057	Frame_Shift_Del	G	-	p.P364fs
LIHC	TCGA-DD-A3A0-01	TMEM143	ENST00000435956.3	chr19	48863328:48863433:48866547:48866788:48867154:48867178,48848529:48848611:48866547:48866788:48867154:48867178,	48866548	48866788	48866745	48866745	Frame_Shift_Del	C	-	p.V23fs
LIHC	TCGA-DD-A3A0-01	LMTK3	ENST00000270238.3	chr19	49013279:49013430:49013715:49013849:49014757:49014870,	49013716	49013849	49013737	49013737	Frame_Shift_Del	T	-	p.K63fs
LIHC	TCGA-DD-A3A0-01	SULT2B1	ENST00000323090.4,ENST00000201586.2	chr19	49079197:49079340:49090485:49090694:49094865:49094992,	49090486	49090694	49090625	49090625	Frame_Shift_Del	C	-	p.S103fs
LIHC	TCGA-DD-A3A0-01	SULT2B1	ENST00000323090.4,ENST00000201586.2	chr19	49090485:49090694:49094865:49094992:49095978:49096073,	49094866	49094992	49094943	49094943	Frame_Shift_Del	G	-	p.K152fs
LIHC	TCGA-DD-A3A0-01	FAM83E	ENST00000593772.1	chr19	49114047:49114104:49116164:49116564:49117964:49118072,	49116165	49116564	49116363	49116363	Frame_Shift_Del	G	-	p.T91fs
LIHC	TCGA-DD-A3A0-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132231	49132231	Frame_Shift_Del	C	-	p.T451fs
LIHC	TCGA-DD-A3A0-01	NTN5	ENST00000600468.1	chr19	49167835:49168024:49173612:49174263:49176188:49176264,	49173613	49174263	49173625	49173625	Frame_Shift_Del	G	-	p.H207fs
LIHC	TCGA-DD-A3A0-01	MAMSTR	ENST00000356751.4,ENST00000419611.1,ENST00000318083.6	chr19	49217116:49217302:49218062:49218165:49218518:49218703,49217622:49217817:49218062:49218165:49218518:49218703,	49218063	49218165	49218106	49218106	Frame_Shift_Del	G	-	p.P162fs
LIHC	TCGA-DD-A3A0-01	BCAT2	ENST00000316273.6,ENST00000601681.1,ENST00000595376.1,ENST00000402551.1,ENST00000597011.1,ENST00000598162.1,ENST00000593515.1	chr19	49303443:49303554:49309773:49309974:49310256:49310331,	49309774	49309974	49309801	49309801	Frame_Shift_Del	G	-	p.A51fs
LIHC	TCGA-DD-A3A0-01	HSD17B14	ENST00000263278.4,ENST00000595764.1	chr19	49318293:49318398:49334924:49335016:49335922:49335989,	49334925	49335016	49335013	49335013	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-DD-A3A0-01	DHDH	ENST00000221403.2	chr19	49442705:49442958:49445696:49445821:49447613:49447764,	49445697	49445821	49445735	49445735	Frame_Shift_Del	G	-	p.G220fs
LIHC	TCGA-DD-A3A0-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458984	49458984	Frame_Shift_Del	C	-	p.P43fs
LIHC	TCGA-DD-A3A0-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458984	49458984	Frame_Shift_Del	C	-	p.P43fs
LIHC	TCGA-DD-A3A0-01	GYS1	ENST00000457974.1	chr19	49490450:49490642:49494558:49494795:49496251:49496329,	49494559	49494795	49494633	49494633	Frame_Shift_Del	G	-	p.Q76fs
LIHC	TCGA-DD-A3A0-01	PPFIA3	ENST00000602351.1,ENST00000334186.4,ENST00000602655.1,ENST00000602848.1,ENST00000602905.1,ENST00000602897.1	chr19	49651922:49652020:49652249:49652425:49652513:49652582,	49652250	49652425	49652345	49652345	Frame_Shift_Del	G	-	p.G1069fs
LIHC	TCGA-DD-A3A0-01	TRPM4	ENST00000427978.2,ENST00000596338.1,ENST00000252826.5	chr19	49669297:49669472:49671173:49671354:49671516:49671594,	49671174	49671354	49671272	49671272	Frame_Shift_Del	G	-	p.L122fs
LIHC	TCGA-DD-A3A0-01	PIH1D1	ENST00000598889.1,ENST00000598175.1	chr19	49950594:49950674:49951083:49951165:49951257:49951267,	49951084	49951165	49951147	49951147	Frame_Shift_Del	C	-	p.E140fs
LIHC	TCGA-DD-A3A0-01	FCGRT	ENST00000596975.1	chr19	50017610:50017743:50027763:50028033:50028713:50028818,50017314:50017390:50027763:50028033:50028713:50028818,	50027764	50028033	50027849	50027849	Frame_Shift_Del	G	-	p.P229fs
LIHC	TCGA-DD-A3A0-01	FCGRT	ENST00000595881.1	chr19	50017467:50017743:50027763:50028830:50029266:50029364,	50027764	50028830	50027849	50027849	Frame_Shift_Del	G	-	p.P229fs
LIHC	TCGA-DD-A3A0-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156035	50156035	Frame_Shift_Del	C	-	p.P798fs
LIHC	TCGA-DD-A3A0-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50157949	50157949	Frame_Shift_Del	C	-	p.T1147fs
LIHC	TCGA-DD-A3A0-01	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165497	50165497	Frame_Shift_Del	C	-	p.G230fs
LIHC	TCGA-DD-A3A0-01	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165497	50165497	Frame_Shift_Del	C	-	p.G230fs
LIHC	TCGA-DD-A3A0-01	BCL2L12	ENST00000246785.3,ENST00000600947.1	chr19	50169956:50170056:50170275:50170418:50172107:50172194,	50170276	50170418	50170388	50170388	Frame_Shift_Del	C	-	p.P158fs
LIHC	TCGA-DD-A3A0-01	BCL2L12	ENST00000441864.2	chr19	50169956:50170056:50170278:50170418:50172107:50172194,	50170279	50170418	50170388	50170388	Frame_Shift_Del	C	-	p.P158fs
LIHC	TCGA-DD-A3A0-01	AP2A1	ENST00000359032.5,ENST00000354293.5	chr19	50303353:50303407:50304217:50304315:50304646:50304878,	50304218	50304315	50304228	50304228	Frame_Shift_Del	C	-	p.A489fs
LIHC	TCGA-DD-A3A0-01	MED25	ENST00000312865.6	chr19	50333078:50333205:50333344:50333475:50333767:50333855,	50333345	50333475	50333452	50333452	Frame_Shift_Del	C	-	p.P267fs
LIHC	TCGA-DD-A3A0-01	MED25	ENST00000312865.6	chr19	50333078:50333205:50333344:50333475:50333767:50333855,	50333345	50333475	50333460	50333460	Frame_Shift_Del	C	-	p.V268fs
LIHC	TCGA-DD-A3A0-01	MED25	ENST00000312865.6,ENST00000538643.1	chr19	50333767:50333855:50333950:50334144:50334589:50334718,	50333951	50334144	50333991	50333991	Frame_Shift_Del	G	-	p.V316fs
LIHC	TCGA-DD-A3A0-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000600603.1,ENST00000594151.1,ENST00000598325.1,ENST00000594165.1,ENST00000601638.1,ENST00000601675.1,ENST00000221557.9,ENST00000391842.1	chr19	50358087:50358145:50358226:50358334:50360231:50360366,	50358227	50358334	50358238	50358238	Frame_Shift_Del	C	-	p.G154fs
LIHC	TCGA-DD-A3A0-01	IL4I1	ENST00000341114.3,ENST00000601717.1,ENST00000595948.1,ENST00000391826.2	chr19	50397530:50397726:50398324:50398437:50399071:50399310,	50398325	50398437	50398403	50398403	Frame_Shift_Del	C	-	p.G118fs
LIHC	TCGA-DD-A3A0-01	VRK3	ENST00000316763.3,ENST00000377011.2,ENST00000599538.1	chr19	50480016:50480041:50482339:50482499:50484211:50484270,	50482340	50482499	50482375	50482375	Frame_Shift_Del	G	-	p.P467fs
LIHC	TCGA-DD-A3A0-01	MYH14	ENST00000425460.1,ENST00000262269.8,ENST00000598205.1,ENST00000440075.2,ENST00000596571.1,ENST00000599920.1,ENST00000601313.1,ENST00000376970.2	chr19	50713622:50714027:50720871:50721028:50726339:50726367,	50720872	50721028	50721003	50721003	Frame_Shift_Del	G	-	p.E179fs
LIHC	TCGA-DD-A3A0-01	NAPSA	ENST00000598915.1,ENST00000253719.2	chr19	50862862:50862904:50862996:50863119:50864197:50864382,	50862997	50863119	50863073	50863073	Frame_Shift_Del	C	-	p.D239fs
LIHC	TCGA-DD-A3A0-01	NR1H2	ENST00000597790.1,ENST00000598168.1,ENST00000597130.1,ENST00000542413.1,ENST00000597157.1,ENST00000253727.5,ENST00000599105.1,ENST00000593532.1,ENST00000593926.1	chr19	50880843:50880905:50880989:50881127:50881405:50881569,	50880990	50881127	50881014	50881014	Frame_Shift_Del	C	-	p.A23fs
LIHC	TCGA-DD-A3A0-01	ASPDH	ENST00000389208.4	chr19	51015417:51015547:51015616:51015837:51016183:51016268,51015417:51015547:51015616:51015837:51017734:51017921,51015417:51015547:51015616:51015837:51015917:51016067,	51015617	51015837	51015664	51015664	Frame_Shift_Del	G	-	p.P202fs
LIHC	TCGA-DD-A3A0-01	ASPDH	ENST00000389208.4	chr19	51016183:51016268:51016528:51016673:51017028:51017142,	51016529	51016673	51016612	51016612	Frame_Shift_Del	A	-	p.F38fs
LIHC	TCGA-DD-A3A0-01	SHANK1	ENST00000391814.1	chr19	51190000:51190069:51190273:51190297:51190838:51190919,	51190274	51190297	51190290	51190290	Frame_Shift_Del	G	-	p.P799fs
LIHC	TCGA-DD-A3A0-01	KLK2	ENST00000594174.1	chr19	51376713:51376775:51377976:51378222:51379727:51379813,	51377977	51378222	51378034	51378034	Frame_Shift_Del	C	-	p.S35fs
LIHC	TCGA-DD-A3A0-01	KLK2	ENST00000597439.1,ENST00000600755.1,ENST00000325321.3,ENST00000358049.4	chr19	51376438:51376510:51377976:51378136:51379727:51379813,51376713:51376775:51377976:51378136:51379727:51379813,	51377977	51378136	51378034	51378034	Frame_Shift_Del	C	-	p.S35fs
LIHC	TCGA-DD-A3A0-01	KLK6	ENST00000391808.1,ENST00000594641.1,ENST00000376851.3,ENST00000310157.2,ENST00000599690.1	chr19	51464999:51465136:51466557:51466805:51470424:51470581,	51466558	51466805	51466716	51466716	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-DD-A3A0-01	KLK6	ENST00000594641.1,ENST00000376851.3,ENST00000310157.2	chr19	51462413:51462572:51470424:51470581:51471320:51471368,51466722:51466805:51470424:51470581:51471796:51471847,51466722:51466805:51470424:51470581:51471320:51471368,	51470425	51470581	51470427	51470427	Frame_Shift_Del	T	-	p.K65fs
LIHC	TCGA-DD-A3A0-01	KLK7	ENST00000597707.1	chr19	51483541:51483743:51485022:51485170:51485582:51485713,51483541:51483743:51485022:51485170:51487106:51487294,	51485023	51485170	51485140	51485140	Frame_Shift_Del	G	-	p.P35fs
LIHC	TCGA-DD-A3A0-01	KLK11	ENST00000594827.1,ENST00000319756.3,ENST00000594458.1	chr19	51527558:51527566:51527889:51528050:51528847:51528890,	51527890	51528050	51527946	51527946	Frame_Shift_Del	C	-	p.A81fs
LIHC	TCGA-DD-A3A0-01	KLK11	ENST00000453757.3,ENST00000594768.1,ENST00000319720.7,ENST00000598799.1,ENST00000601671.1	chr19	51527558:51527566:51527893:51528050:51528847:51528890,	51527894	51528050	51527946	51527946	Frame_Shift_Del	C	-	p.A81fs
LIHC	TCGA-DD-A3A0-01	KLK11	ENST00000601671.1	chr19	51527893:51528050:51528847:51528954:51529793:51529851,	51528848	51528954	51528896	51528896	Frame_Shift_Del	G	-	p.L30fs
LIHC	TCGA-DD-A3A0-01	KLK11	ENST00000453757.3,ENST00000594827.1,ENST00000594458.1	chr19	51527893:51528050:51528847:51528922:51530712:51530773,51527893:51528050:51528847:51528922:51529793:51529851,	51528848	51528922	51528896	51528896	Frame_Shift_Del	G	-	p.L30fs
LIHC	TCGA-DD-A3A0-01	SIGLEC9	ENST00000440804.3	chr19	51628164:51628652:51628853:51629132:51629337:51629385,	51628854	51629132	51629042	51629042	Frame_Shift_Del	C	-	p.P204fs
LIHC	TCGA-DD-A3A0-01	SIGLEC7	ENST00000317643.6	chr19	51645626:51646059:51647662:51647941:51648168:51648216,	51647663	51647941	51647851	51647851	Frame_Shift_Del	C	-	p.P208fs
LIHC	TCGA-DD-A3A0-01	ETFB	ENST00000593992.1,ENST00000309244.4	chr19	51853582:51853645:51856385:51856544:51857403:51857562,	51856386	51856544	51856457	51856457	Frame_Shift_Del	G	-	p.L193fs
LIHC	TCGA-DD-A3A0-01	CEACAM18	ENST00000396477.4,ENST00000451626.1	chr19	51981875:51981948:51983586:51983934:51984646:51984749,	51983587	51983934	51983790	51983790	Frame_Shift_Del	C	-	p.P86fs
LIHC	TCGA-DD-A3A0-01	SIGLEC6	ENST00000359982.4	chr19	52022983:52023509:52031413:52031507:52032977:52033235,	52031414	52031507	52031438	52031438	Frame_Shift_Del	A	-	p.F345fs
LIHC	TCGA-DD-A3A0-01	SIGLEC6	ENST00000343300.4,ENST00000391797.3	chr19	52023252:52023509:52032977:52033235:52033690:52033738,	52032978	52033235	52033227	52033227	Frame_Shift_Del	T	-	p.I239fs
LIHC	TCGA-DD-A3A0-01	HAS1	ENST00000540069.2,ENST00000601714.1,ENST00000222115.1	chr19	52217144:52217355:52219508:52219641:52220220:52220446,	52219509	52219641	52219562	52219562	Frame_Shift_Del	A	-	p.F335fs
LIHC	TCGA-DD-A3A0-01	HAS1	ENST00000601667.1	chr19	52217144:52217355:52219482:52219641:52220220:52220446,	52219483	52219641	52219562	52219562	Frame_Shift_Del	A	-	p.F335fs
LIHC	TCGA-DD-A3A0-01	ZNF577	ENST00000420592.1,ENST00000451628.2,ENST00000458390.1,ENST00000412216.1,ENST00000301399.5	chr19	52380534:52380630:52381641:52381768:52383575:52383642,	52381642	52381768	52381766	52381766	Frame_Shift_Del	C	-	p.G21fs
LIHC	TCGA-DD-A3A0-01	NDUFA3	ENST00000391763.3,ENST00000484103.1,ENST00000419113.1,ENST00000485876.1,ENST00000303553.5	chr19	54608908:54609010:54609240:54609318:54610117:54610268,54606421:54606496:54609240:54609318:54611746:54611840,54606424:54606496:54609240:54609318:54610117:54610268,	54609241	54609318	54609303	54609303	Frame_Shift_Del	C	-	p.P50fs
LIHC	TCGA-DD-A3A0-01	CNOT3	ENST00000482247.1,ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54650336:54650393:54651882:54652270:54652354:54652432,	54651883	54652270	54651966	54651966	Frame_Shift_Del	C	-	p.G326fs
LIHC	TCGA-DD-A3A0-01	CNOT3	ENST00000482247.1,ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54650336:54650393:54651882:54652270:54652354:54652432,	54651883	54652270	54652022	54652022	Frame_Shift_Del	C	-	p.A345fs
LIHC	TCGA-DD-A3A0-01	TMC4	ENST00000376591.4,ENST00000465790.1,ENST00000416963.1,ENST00000301187.4	chr19	54663901:54664111:54664203:54664282:54664614:54664709,	54664204	54664282	54664219	54664219	Frame_Shift_Del	T	-	p.K685fs
LIHC	TCGA-DD-A3A0-01	TMC4	ENST00000449860.1	chr19	54663901:54664111:54664203:54664347:54664614:54664709,	54664204	54664347	54664219	54664219	Frame_Shift_Del	T	-	p.K685fs
LIHC	TCGA-DD-A3A0-01	TMC4	ENST00000376591.4,ENST00000465790.1,ENST00000416963.1,ENST00000301187.4	chr19	54664614:54664770:54664866:54664997:54665837:54666021,	54664867	54664997	54664909	54664909	Frame_Shift_Del	C	-	p.G598fs
LIHC	TCGA-DD-A3A0-01	TMC4	ENST00000376591.4,ENST00000465790.1,ENST00000416963.1,ENST00000301187.4	chr19	54664614:54664770:54664866:54664997:54665837:54666021,	54664867	54664997	54664972	54664972	Frame_Shift_Del	G	-	p.P577fs
LIHC	TCGA-DD-A3A0-01	TSEN34	ENST00000396383.1,ENST00000396388.2,ENST00000302937.4,ENST00000429671.2,ENST00000496583.1	chr19	54695571:54695815:54695966:54696224:54697029:54697173,	54695967	54696224	54696006	54696006	Frame_Shift_Del	C	-	p.A176fs
LIHC	TCGA-DD-A3A0-01	LILRB2	ENST00000314446.5,ENST00000391748.1	chr19	54781403:54781454:54781742:54781793:54782113:54782398,54781403:54781451:54781742:54781793:54782113:54782398,	54781743	54781793	54781769	54781769	Frame_Shift_Del	G	-	p.P429fs
LIHC	TCGA-DD-A3A0-01	TTYH1	ENST00000425969.1	chr19	54926780:54926852:54930301:54930480:54932450:54932517,54926780:54926852:54930301:54930480:54933363:54933422,	54930302	54930480	54930421	54930421	Frame_Shift_Del	C	-	p.I82fs
LIHC	TCGA-DD-A3A0-01	TTYH1	ENST00000425969.1	chr19	54926780:54926852:54930301:54930480:54932450:54932517,54926780:54926852:54930301:54930480:54933363:54933422,	54930302	54930480	54930431	54930431	Frame_Shift_Del	G	-	p.G88fs
LIHC	TCGA-DD-A3A0-01	KIR2DL4	ENST00000486965.2,ENST00000396284.2,ENST00000463062.1,ENST00000396289.5,ENST00000345540.5,ENST00000357494.4,ENST00000359085.4	chr19	55315345:55315381:55316247:55316532:55317405:55317699,	55316248	55316532	55316370	55316370	Frame_Shift_Del	G	-	p.G65fs
LIHC	TCGA-DD-A3A0-01	FCAR	ENST00000359272.4,ENST00000355524.3	chr19	55396646:55396937:55399373:55399661:55401014:55401229,	55399374	55399661	55399661	55399661	Frame_Shift_Del	G	-	p.G217fs
LIHC	TCGA-DD-A3A0-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451011	55451011	Frame_Shift_Del	C	-	p.G420fs
LIHC	TCGA-DD-A3A0-01	EPS8L1	ENST00000589362.1,ENST00000540810.1,ENST00000592102.1,ENST00000588359.1,ENST00000201647.6,ENST00000245618.5	chr19	55594983:55595012:55597208:55597341:55597428:55597560,	55597209	55597341	55597268	55597268	Frame_Shift_Del	G	-	p.W482fs
LIHC	TCGA-DD-A3A0-01	EPS8L1	ENST00000587901.1	chr19	55598144:55598256:55598722:55598803:55598895:55599057,	55598723	55598803	55598755	55598755	Frame_Shift_Del	G	-	p.E679fs
LIHC	TCGA-DD-A3A0-01	EPS8L1	ENST00000589362.1,ENST00000540810.1,ENST00000592102.1,ENST00000588359.1,ENST00000201647.6,ENST00000245618.5	chr19	55598144:55598256:55598670:55598803:55598895:55599057,	55598671	55598803	55598755	55598755	Frame_Shift_Del	G	-	p.E679fs
LIHC	TCGA-DD-A3A0-01	PPP1R12C	ENST00000591938.1,ENST00000435544.2,ENST00000590268.1,ENST00000263433.3,ENST00000376393.2,ENST00000592993.1	chr19	55602783:55602926:55603017:55603068:55603226:55603277,	55603018	55603068	55603059	55603059	Frame_Shift_Del	C	-	p.A741fs
LIHC	TCGA-DD-A3A0-01	PPP1R12C	ENST00000435544.2,ENST00000263433.3,ENST00000376393.2,ENST00000592993.1	chr19	55610318:55610463:55614776:55614936:55623834:55623953,	55614777	55614936	55614910	55614910	Frame_Shift_Del	C	-	p.A200fs
LIHC	TCGA-DD-A3A0-01	PPP1R12C	ENST00000435544.2,ENST00000263433.3,ENST00000376393.2,ENST00000592993.1	chr19	55614776:55614936:55623834:55623953:55624032:55624163,	55623835	55623953	55623895	55623895	Frame_Shift_Del	G	-	p.L171fs
LIHC	TCGA-DD-A3A0-01	TNNT1	ENST00000587758.1,ENST00000589226.1,ENST00000536926.1,ENST00000593194.1,ENST00000587465.2,ENST00000588981.1,ENST00000356783.5,ENST00000291901.8,ENST00000587089.2,ENST00000585321.2,ENST00000593046.1,ENST00000588147.1	chr19	55649385:55649442:55652250:55652328:55652553:55652670,	55652251	55652328	55652258	55652258	Frame_Shift_Del	T	-	p.K127fs
LIHC	TCGA-DD-A3A0-01	PTPRH	ENST00000376350.3,ENST00000263434.5	chr19	55698880:55698971:55699445:55699536:55702868:55702916,	55699446	55699536	55699526	55699526	Frame_Shift_Del	C	-	p.D799fs
LIHC	TCGA-DD-A3A0-01	SSC5D	ENST00000389623.6,ENST00000588254.1,ENST00000587166.1	chr19	56000720:56001029:56001248:56001362:56001664:56001775,	56001249	56001362	56001287	56001287	Frame_Shift_Del	C	-	p.P134fs
LIHC	TCGA-DD-A3A0-01	U2AF2	ENST00000590551.1,ENST00000450554.2	chr19	56180035:56180158:56180448:56180535:56180809:56181058,	56180449	56180535	56180478	56180478	Frame_Shift_Del	G	-	p.L325fs
LIHC	TCGA-DD-A3A0-01	U2AF2	ENST00000308924.4	chr19	56180035:56180158:56180448:56180547:56180809:56181058,	56180449	56180547	56180478	56180478	Frame_Shift_Del	G	-	p.L325fs
LIHC	TCGA-DD-A3A0-01	U2AF2	ENST00000308924.4	chr19	56180035:56180158:56180448:56180547:56180809:56181058,	56180449	56180547	56180541	56180541	Frame_Shift_Del	C	-	p.S346fs
LIHC	TCGA-DD-A3A0-01	EPN1	ENST00000270460.6,ENST00000591743.1	chr19	56196761:56197011:56200235:56200360:56201232:56201281,56196761:56197011:56200235:56200360:56200662:56200737,	56200236	56200360	56200261	56200261	Frame_Shift_Del	C	-	p.G279fs
LIHC	TCGA-DD-A3A0-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56201232:56201316:56203119:56203423:56204051:56204162,	56203120	56203423	56203184	56203184	Frame_Shift_Del	G	-	p.W362fs
LIHC	TCGA-DD-A3A0-01	AURKC	ENST00000601799.1,ENST00000596375.1	chr19	57743909:57744048:57744827:57744976:57746251:57746426,57743985:57744053:57744827:57744976:57746251:57746426,	57744828	57744976	57744964	57744964	Frame_Shift_Del	C	-	p.T191fs
LIHC	TCGA-DD-A3A0-01	ZNF671	ENST00000317398.6	chr19	58233683:58233806:58234581:58234708:58238758:58238982,	58234582	58234708	58234694	58234694	Frame_Shift_Del	A	-	p.F51fs
LIHC	TCGA-DD-A3A0-01	SLC27A5	ENST00000594786.1,ENST00000601355.1,ENST00000263093.2	chr19	59010010:59010058:59010151:59010282:59010489:59010587,	59010152	59010282	59010169	59010169	Frame_Shift_Del	G	-	p.H627fs
LIHC	TCGA-DD-A3A0-01	MZF1	ENST00000599369.1,ENST00000215057.2	chr19	59073299:59074871:59080643:59080764:59080882:59080953,	59080644	59080764	59080709	59080709	Frame_Shift_Del	C	-	p.G236fs
LIHC	TCGA-DD-A3A0-01	SLC52A3	ENST00000381944.3	chr20	744141:744647:745851:746469:748940:749126,	745852	746469	745883	745883	Frame_Shift_Del	G	-	p.P179fs
LIHC	TCGA-DD-A3A0-01	PSMF1	ENST00000246015.4,ENST00000479715.1,ENST00000381898.4,ENST00000333082.3,ENST00000335877.6	chr20	1108068:1108151:1115763:1115949:1143773:1143827,	1115764	1115949	1115872	1115872	Frame_Shift_Del	C	-	p.F158fs
LIHC	TCGA-DD-A3A0-01	RAD21L1	ENST00000409241.1	chr20	1224689:1224814:1226853:1226949:1229269:1229347,	1226854	1226949	1226924	1226924	Frame_Shift_Del	A	-	p.E460fs
LIHC	TCGA-DD-A3A0-01	SDCBP2	ENST00000360779.3,ENST00000381812.1,ENST00000381808.3,ENST00000339987.3	chr20	1291443:1291535:1292980:1293152:1293230:1293406,	1292981	1293152	1293090	1293090	Frame_Shift_Del	T	-	p.K209fs
LIHC	TCGA-DD-A3A0-01	STK35	ENST00000246032.3,ENST00000381482.3	chr20	2083553:2084011:2097311:2098061:2124429:2124538,	2097312	2098061	2097889	2097889	Frame_Shift_Del	C	-	p.I490fs
LIHC	TCGA-DD-A3A0-01	IDH3B	ENST00000380851.5,ENST00000474315.1,ENST00000380843.4	chr20	2640908:2641011:2641102:2641236:2641342:2641475,	2641103	2641236	2641211	2641211	Frame_Shift_Del	A	-	p.L186fs
LIHC	TCGA-DD-A3A0-01	IDH3B	ENST00000488299.1	chr20	2640908:2641011:2641102:2641475:2641554:2641615,	2641103	2641475	2641211	2641211	Frame_Shift_Del	A	-	p.L186fs
LIHC	TCGA-DD-A3A0-01	EBF4	ENST00000469215.1,ENST00000497450.1,ENST00000609967.1,ENST00000342725.5,ENST00000449079.3,ENST00000609451.1,ENST00000380648.4	chr20	2674334:2674428:2686222:2686379:2686619:2686683,	2686223	2686379	2686322	2686322	Frame_Shift_Del	G	-	p.Q75fs
LIHC	TCGA-DD-A3A0-01	PCED1A	ENST00000356872.3,ENST00000360652.2	chr20	2815959:2816355:2816684:2816960:2818877:2818998,	2816685	2816960	2816739	2816739	Frame_Shift_Del	G	-	p.H355fs
LIHC	TCGA-DD-A3A0-01	PCED1A	ENST00000487501.2	chr20	2815959:2816355:2816684:2816756:2819241:2819392,	2816685	2816756	2816739	2816739	Frame_Shift_Del	G	-	p.H355fs
LIHC	TCGA-DD-A3A0-01	VPS16	ENST00000380445.3	chr20	2842699:2842776:2843224:2843356:2843452:2843580,	2843225	2843356	2843256	2843256	Frame_Shift_Del	G	-	p.R368fs
LIHC	TCGA-DD-A3A0-01	SLC4A11	ENST00000380056.3,ENST00000539553.2,ENST00000380059.3,ENST00000474451.1	chr20	3211160:3211293:3211377:3211491:3211578:3211704,	3211378	3211491	3211455	3211455	Frame_Shift_Del	C	-	p.G445fs
LIHC	TCGA-DD-A3A0-01	ADAM33	ENST00000350009.2,ENST00000356518.2,ENST00000466620.1,ENST00000379861.4	chr20	3649945:3650017:3650192:3650284:3651652:3651800,	3650193	3650284	3650236	3650236	Frame_Shift_Del	G	-	p.P763fs
LIHC	TCGA-DD-A3A0-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3674867:3675179:3675309:3675570:3677232:3677535,	3675310	3675570	3675329	3675329	Frame_Shift_Del	G	-	p.P975fs
LIHC	TCGA-DD-A3A0-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3679848:3680106:3681988:3682288:3683843:3684098,	3681989	3682288	3682171	3682171	Frame_Shift_Del	C	-	p.G449fs
LIHC	TCGA-DD-A3A0-01	MAVS	ENST00000416600.2	chr20	3838281:3838456:3841978:3842151:3842900:3843060,3835271:3835388:3841978:3842151:3842900:3843060,	3841979	3842151	3842041	3842041	Frame_Shift_Del	C	-	p.P120fs
LIHC	TCGA-DD-A3A0-01	PANK2	ENST00000464452.1,ENST00000495692.1,ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3891223:3891477:3893104:3893281:3897573:3897697,	3893105	3893281	3893120	3893120	Frame_Shift_Del	T	-	p.T126fs
LIHC	TCGA-DD-A3A0-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163112	4163112	Frame_Shift_Del	T	-	p.I329fs
LIHC	TCGA-DD-A3A0-01	SLC23A2	ENST00000423430.1,ENST00000338244.1,ENST00000379333.1,ENST00000424750.2	chr20	4840012:4840030:4842593:4842731:4843423:4843553,	4842594	4842731	4842605	4842605	Frame_Shift_Del	G	-	p.P538fs
LIHC	TCGA-DD-A3A0-01	TMEM230	ENST00000379299.2,ENST00000379279.2,ENST00000342308.5,ENST00000379277.2,ENST00000202834.7,ENST00000379286.2,ENST00000379283.2	chr20	5080485:5081577:5086833:5086956:5089977:5090091,	5086834	5086956	5086937	5086937	Frame_Shift_Del	T	-	p.K40fs
LIHC	TCGA-DD-A3A0-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903107	5903107	Frame_Shift_Del	C	-	p.A106fs
LIHC	TCGA-DD-A3A0-01	CRLS1	ENST00000452938.1	chr20	5986795:5987198:5990420:5990558:5996006:5996136,	5990421	5990558	5990476	5990476	Frame_Shift_Del	C	-	p.A121fs
LIHC	TCGA-DD-A3A0-01	CRLS1	ENST00000452938.1	chr20	5986795:5987198:5990420:5990558:5996006:5996136,	5990421	5990558	5990555	5990555	Frame_Shift_Del	T	-	p.D147fs
LIHC	TCGA-DD-A3A0-01	PLCB4	ENST00000378473.3,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9343542:9343622:9346107:9346161:9351860:9351942,	9346108	9346161	9346145	9346145	Frame_Shift_Del	A	-	p.K163fs
LIHC	TCGA-DD-A3A0-01	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438083	9438083	Frame_Shift_Del	A	-	p.K996fs
LIHC	TCGA-DD-A3A0-01	ANKEF1	ENST00000488991.1,ENST00000378392.1,ENST00000378380.3	chr20	10023769:10023969:10025041:10025191:10026221:10026345,	10025042	10025191	10025091	10025091	Frame_Shift_Del	A	-	p.E199fs
LIHC	TCGA-DD-A3A0-01	MKKS	ENST00000347364.3,ENST00000399054.2	chr20	10389275:10389451:10393177:10394579:10401175:10401406,	10393178	10394579	10393458	10393458	Frame_Shift_Del	T	-	p.K235fs
LIHC	TCGA-DD-A3A0-01	SPTLC3	ENST00000399002.2	chr20	13090758:13090864:13098152:13098372:13107237:13107364,	13098153	13098372	13098202	13098202	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-DD-A3A0-01	PCSK2	ENST00000470007.1,ENST00000262545.2,ENST00000377899.1	chr20	17240884:17240989:17338971:17339085:17341176:17341285,	17338972	17339085	17339063	17339063	Frame_Shift_Del	T	-	p.L125fs
LIHC	TCGA-DD-A3A0-01	PCSK2	ENST00000262545.2,ENST00000536609.1,ENST00000377899.1	chr20	17436992:17437093:17445970:17446198:17462228:17462436,	17445971	17446198	17446146	17446146	Frame_Shift_Del	A	-	p.K460fs
LIHC	TCGA-DD-A3A0-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581420	17581420	Frame_Shift_Del	T	-	p.I14fs
LIHC	TCGA-DD-A3A0-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17616201:17616309:17617221:17617374:17622441:17622564,	17617222	17617374	17617338	17617338	Frame_Shift_Del	C	-	p.E741fs
LIHC	TCGA-DD-A3A0-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17617221:17617374:17622441:17622564:17623623:17623772,	17622442	17622564	17622505	17622505	Frame_Shift_Del	T	-	p.K707fs
LIHC	TCGA-DD-A3A0-01	RRBP1	ENST00000246043.4,ENST00000377813.1	chr20	17622441:17622564:17623623:17623772:17639240:17639577,	17623624	17623772	17623704	17623704	Frame_Shift_Del	C	-	p.V661fs
LIHC	TCGA-DD-A3A0-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639817	17639817	Frame_Shift_Del	G	-	p.Q446fs
LIHC	TCGA-DD-A3A0-01	SNX5	ENST00000476648.1,ENST00000377768.3,ENST00000377759.4,ENST00000463050.1,ENST00000483485.1,ENST00000490175.1,ENST00000431277.1	chr20	17929533:17929620:17929707:17929747:17930775:17930851,	17929708	17929747	17929714	17929714	Frame_Shift_Del	T	-	p.K275fs
LIHC	TCGA-DD-A3A0-01	MGME1	ENST00000377709.1,ENST00000377710.5	chr20	17950699:17951013:17968808:17968941:17970581:17970874,17956341:17956546:17968808:17968941:17970581:17970874,	17968809	17968941	17968857	17968857	Frame_Shift_Del	T	-	p.P260fs
LIHC	TCGA-DD-A3A0-01	ZNF133	ENST00000377671.3,ENST00000425686.1,ENST00000401790.1	chr20	18285728:18285822:18286324:18286451:18286941:18287037,	18286325	18286451	18286395	18286395	Frame_Shift_Del	A	-	p.Q22fs
LIHC	TCGA-DD-A3A0-01	ZNF133	ENST00000434018.1,ENST00000402618.2	chr20	18269177:18269248:18286311:18286451:18286941:18287037,	18286312	18286451	18286395	18286395	Frame_Shift_Del	A	-	p.Q22fs
LIHC	TCGA-DD-A3A0-01	ZNF133	ENST00000535822.1	chr20	18269177:18269248:18286962:18287037:18295712:18295750,	18286963	18287037	18287008	18287008	Frame_Shift_Del	A	-	p.E63fs
LIHC	TCGA-DD-A3A0-01	DZANK1	ENST00000487128.1,ENST00000358866.6,ENST00000377630.5,ENST00000262547.5,ENST00000329494.5,ENST00000609267.1,ENST00000357236.4,ENST00000608192.1,ENST00000460891.1	chr20	18394991:18395156:18395970:18396093:18407710:18407803,	18395971	18396093	18396049	18396049	Frame_Shift_Del	T	-	p.K219fs
LIHC	TCGA-DD-A3A0-01	POLR3F	ENST00000377603.4,ENST00000489753.1,ENST00000462997.1	chr20	18455718:18455831:18460681:18460825:18461045:18461153,	18460682	18460825	18460687	18460687	Frame_Shift_Del	A	-	p.S145fs
LIHC	TCGA-DD-A3A0-01	SEC23B	ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000450074.1,ENST00000262544.2	chr20	18496293:18496380:18505076:18505313:18505578:18505664,	18505077	18505313	18505202	18505202	Frame_Shift_Del	G	-	p.V164fs
LIHC	TCGA-DD-A3A0-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956394	19956394	Frame_Shift_Del	C	-	p.D624fs
LIHC	TCGA-DD-A3A0-01	RIN2	ENST00000255006.6,ENST00000440354.2,ENST00000484638.1	chr20	19972811:19972943:19977322:19977486:19981256:19981992,	19977323	19977486	19977465	19977465	Frame_Shift_Del	C	-	p.I830fs
LIHC	TCGA-DD-A3A0-01	RALGAPA2	ENST00000202677.7,ENST00000424981.1	chr20	20616061:20616261:20618006:20618145:20620428:20620544,	20618007	20618145	20618086	20618086	Frame_Shift_Del	A	-	p.F242fs
LIHC	TCGA-DD-A3A0-01	ENTPD6	ENST00000360031.2,ENST00000435520.1	chr20	25176474:25176503:25187714:25188033:25190484:25190561,25187157:25187226:25187714:25188033:25190484:25190561,	25187715	25188033	25187773	25187773	Frame_Shift_Del	G	-	p.R38fs
LIHC	TCGA-DD-A3A0-01	ENTPD6	ENST00000433259.2,ENST00000376652.4,ENST00000425813.1	chr20	25176474:25176503:25187711:25188033:25190484:25190561,25187157:25187226:25187711:25188033:25190484:25190561,	25187712	25188033	25187773	25187773	Frame_Shift_Del	G	-	p.R38fs
LIHC	TCGA-DD-A3A0-01	PYGB	ENST00000216962.4	chr20	25257879:25257962:25258954:25259098:25259692:25259785,	25258955	25259098	25258963	25258963	Frame_Shift_Del	G	-	p.E288fs
LIHC	TCGA-DD-A3A0-01	NINL	ENST00000422516.1,ENST00000278886.6	chr20	25470510:25470621:25471986:25472161:25477298:25477439,	25471987	25472161	25472136	25472136	Frame_Shift_Del	T	-	p.R446fs
LIHC	TCGA-DD-A3A0-01	ZNF337	ENST00000481610.1,ENST00000376436.1,ENST00000252979.5	chr20	25657584:25657673:25666202:25666298:25666631:25666758,	25666203	25666298	25666210	25666210	Frame_Shift_Del	G	-	p.P81fs
LIHC	TCGA-DD-A3A0-01	HM13	ENST00000376127.3,ENST00000496438.1,ENST00000498035.1,ENST00000340852.5,ENST00000344042.5,ENST00000398174.3	chr20	30102457:30102537:30115286:30115385:30125981:30126031,	30115287	30115385	30115377	30115377	Frame_Shift_Del	T	-	p.F93fs
LIHC	TCGA-DD-A3A0-01	HM13	ENST00000376127.3,ENST00000469126.1,ENST00000335574.5,ENST00000340852.5,ENST00000344042.5,ENST00000398174.3	chr20	30115286:30115385:30132749:30132838:30137866:30137924,30125981:30126162:30132749:30132838:30136831:30136917,30125997:30126064:30132749:30132838:30136831:30136917,	30132750	30132838	30132827	30132827	Frame_Shift_Del	A	-	p.E148fs
LIHC	TCGA-DD-A3A0-01	DUSP15	ENST00000398084.2,ENST00000339738.5,ENST00000375966.4,ENST00000486996.1,ENST00000398083.1,ENST00000278979.3,ENST00000459848.1	chr20	30450389:30450545:30451709:30451784:30452755:30452805,	30451710	30451784	30451727	30451727	Frame_Shift_Del	C	-	p.G79fs
LIHC	TCGA-DD-A3A0-01	CCM2L	ENST00000262659.8	chr20	30598252:30598287:30602706:30602874:30605602:30605686,	30602707	30602874	30602803	30602803	Frame_Shift_Del	C	-	p.P43fs
LIHC	TCGA-DD-A3A0-01	COMMD7	ENST00000278980.6,ENST00000446419.2,ENST00000610160.1	chr20	31291824:31291873:31292241:31292291:31292615:31292706,	31292242	31292291	31292246	31292246	Frame_Shift_Del	A	-	p.L157fs
LIHC	TCGA-DD-A3A0-01	EFCAB8	ENST00000400522.4	chr20	31473310:31473446:31477106:31477212:31480018:31480103,	31477107	31477212	31477204	31477204	Frame_Shift_Del	A	-	p.Q222fs
LIHC	TCGA-DD-A3A0-01	BPIFB2	ENST00000170150.3	chr20	31596353:31596489:31598829:31598923:31600608:31600713,	31598830	31598923	31598885	31598885	Frame_Shift_Del	T	-	p.H55fs
LIHC	TCGA-DD-A3A0-01	BPIFA1	ENST00000375422.2,ENST00000354297.4,ENST00000375413.4	chr20	31829190:31829275:31829861:31829925:31830292:31830367,	31829862	31829925	31829867	31829867	Frame_Shift_Del	C	-	p.C224fs
LIHC	TCGA-DD-A3A0-01	CDK5RAP1	ENST00000427097.1,ENST00000461710.1,ENST00000473997.1,ENST00000482967.1,ENST00000339269.5,ENST00000346416.2,ENST00000357886.4,ENST00000496381.1	chr20	31954664:31954814:31958304:31958435:31960447:31960503,	31958305	31958435	31958339	31958339	Frame_Shift_Del	T	-	p.N467fs
LIHC	TCGA-DD-A3A0-01	CBFA2T2	ENST00000397798.2,ENST00000492345.1,ENST00000346541.3,ENST00000344201.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32198903:32199141:32207322:32207412:32210920:32211102,	32207323	32207412	32207380	32207380	Frame_Shift_Del	C	-	p.P169fs
LIHC	TCGA-DD-A3A0-01	ZNF341	ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32328707:32328818:32332908:32333105:32336728:32336878,	32332909	32333105	32333005	32333005	Frame_Shift_Del	C	-	p.A80fs
LIHC	TCGA-DD-A3A0-01	ZNF341	ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32332908:32333105:32336728:32336878:32340977:32341229,	32336729	32336878	32336750	32336750	Frame_Shift_Del	C	-	p.P122fs
LIHC	TCGA-DD-A3A0-01	RALY	ENST00000488227.1,ENST00000448364.1,ENST00000246194.3	chr20	32661415:32661441:32661624:32661672:32663679:32663727,	32661625	32661672	32661635	32661635	Frame_Shift_Del	T	-	p.F114fs
LIHC	TCGA-DD-A3A0-01	RALY	ENST00000488227.1,ENST00000448364.1,ENST00000246194.3	chr20	32661415:32661441:32661624:32661672:32663679:32663727,	32661625	32661672	32661652	32661652	Frame_Shift_Del	C	-	p.Y119fs
LIHC	TCGA-DD-A3A0-01	RALY	ENST00000493399.1,ENST00000375114.3,ENST00000442805.1	chr20	32661624:32661672:32663679:32663846:32664507:32664621,32661415:32661441:32663679:32663846:32664507:32664621,	32663680	32663846	32663801	32663801	Frame_Shift_Del	T	-	p.F151fs
LIHC	TCGA-DD-A3A0-01	RALY	ENST00000375114.3,ENST00000246194.3	chr20	32664507:32664621:32664833:32665051:32666310:32666351,	32664834	32665051	32664985	32664985	Frame_Shift_Del	G	-	p.Q254fs
LIHC	TCGA-DD-A3A0-01	AHCY	ENST00000538132.1,ENST00000480653.1,ENST00000217426.2	chr20	32868832:32868971:32873245:32873440:32878137:32878255,	32873246	32873440	32873257	32873257	Frame_Shift_Del	G	-	p.L358fs
LIHC	TCGA-DD-A3A0-01	AHCY	ENST00000538132.1,ENST00000480653.1,ENST00000217426.2	chr20	32878356:32878444:32878536:32878744:32879224:32879337,	32878537	32878744	32878609	32878609	Frame_Shift_Del	G	-	p.L204fs
LIHC	TCGA-DD-A3A0-01	ITCH	ENST00000374864.4,ENST00000262650.6,ENST00000486883.1	chr20	32981596:32981687:32996456:32996598:33000320:33000445,	32996457	32996598	32996550	32996550	Frame_Shift_Del	A	-	p.E55fs
LIHC	TCGA-DD-A3A0-01	ITCH	ENST00000374864.4,ENST00000535650.1	chr20	33000320:33000445:33001547:33001685:33012285:33012331,	33001548	33001685	33001620	33001620	Frame_Shift_Del	T	-	p.I137fs
LIHC	TCGA-DD-A3A0-01	DYNLRB1	ENST00000357156.2,ENST00000374846.3	chr20	33114076:33114148:33122431:33122599:33128384:33128762,	33122432	33122599	33122460	33122460	Frame_Shift_Del	C	-	p.N36fs
LIHC	TCGA-DD-A3A0-01	TP53INP2	ENST00000374809.2,ENST00000374810.3	chr20	33296512:33296667:33297039:33297328:33297861:33301243,	33297040	33297328	33297141	33297141	Frame_Shift_Del	C	-	p.P76fs
LIHC	TCGA-DD-A3A0-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33328463	33328463	Frame_Shift_Del	C	-	p.G1866fs
LIHC	TCGA-DD-A3A0-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33328471	33328471	Frame_Shift_Del	C	-	p.G1863fs
LIHC	TCGA-DD-A3A0-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2	chr20	33603810:33603942:33608992:33609159:33622925:33623094,	33608993	33609159	33609082	33609082	Frame_Shift_Del	G	-	p.Q377fs
LIHC	TCGA-DD-A3A0-01	TRPC4AP	ENST00000451813.2	chr20	33603810:33603942:33608992:33609135:33622925:33623094,	33608993	33609135	33609082	33609082	Frame_Shift_Del	G	-	p.Q377fs
LIHC	TCGA-DD-A3A0-01	EDEM2	ENST00000541621.1,ENST00000374492.3,ENST00000374491.3,ENST00000542871.1	chr20	33703169:33703736:33706400:33706522:33711692:33711837,	33706401	33706522	33706407	33706407	Frame_Shift_Del	A	-	p.F369fs
LIHC	TCGA-DD-A3A0-01	EDEM2	ENST00000541621.1,ENST00000374492.3,ENST00000374491.3,ENST00000542871.1	chr20	33703169:33703736:33706400:33706522:33711692:33711837,	33706401	33706522	33706421	33706421	Frame_Shift_Del	C	-	p.V365fs
LIHC	TCGA-DD-A3A0-01	NFS1	ENST00000374092.4,ENST00000374085.1,ENST00000397425.1,ENST00000440385.1	chr20	34269886:34269903:34278334:34278487:34284298:34284382,	34278335	34278487	34278439	34278439	Frame_Shift_Del	G	-	p.Q153fs
LIHC	TCGA-DD-A3A0-01	NFS1	ENST00000374092.4,ENST00000374085.1,ENST00000397425.1,ENST00000440385.1	chr20	34269886:34269903:34278334:34278487:34284298:34284382,	34278335	34278487	34278456	34278456	Frame_Shift_Del	T	-	p.K147fs
LIHC	TCGA-DD-A3A0-01	PHF20	ENST00000374000.4,ENST00000339089.6,ENST00000486408.1,ENST00000374012.3	chr20	34435271:34435356:34450934:34451322:34457359:34457473,34446223:34446303:34450934:34451322:34457359:34457473,	34450935	34451322	34451024	34451024	Frame_Shift_Del	A	-	p.R170fs
LIHC	TCGA-DD-A3A0-01	EPB41L1	ENST00000373950.2,ENST00000202028.5,ENST00000441639.1,ENST00000373941.1,ENST00000338074.2	chr20	34785801:34785963:34797409:34797820:34800193:34800298,	34797410	34797820	34797416	34797416	Frame_Shift_Del	G	-	p.G559fs
LIHC	TCGA-DD-A3A0-01	AAR2	ENST00000320849.4	chr20	34824386:34824425:34827742:34828547:34832618:34832848,	34827743	34828547	34827874	34827874	Frame_Shift_Del	G	-	p.K28fs
LIHC	TCGA-DD-A3A0-01	DLGAP4	ENST00000373913.3,ENST00000373907.2,ENST00000401952.2	chr20	34995551:34995678:35060048:35061119:35064511:35064753,	35060049	35061119	35060810	35060810	Frame_Shift_Del	A	-	p.L230fs
LIHC	TCGA-DD-A3A0-01	DLGAP4	ENST00000373913.3,ENST00000373907.2,ENST00000401952.2	chr20	34995551:34995678:35060048:35061119:35064511:35064753,	35060049	35061119	35060883	35060883	Frame_Shift_Del	A	-	p.K255fs
LIHC	TCGA-DD-A3A0-01	RBL1	ENST00000344359.3,ENST00000373664.3	chr20	35695395:35695524:35695635:35695700:35696388:35696458,	35695636	35695700	35695649	35695649	Frame_Shift_Del	A	-	p.F181fs
LIHC	TCGA-DD-A3A0-01	MROH8	ENST00000217333.8,ENST00000417458.1,ENST00000441008.2,ENST00000343811.4,ENST00000400441.3	chr20	35743575:35743740:35748100:35748241:35748906:35749021,	35748101	35748241	35748209	35748209	Frame_Shift_Del	G	-	p.P754fs
LIHC	TCGA-DD-A3A0-01	MROH8	ENST00000400440.2,ENST00000421643.1,ENST00000441008.2,ENST00000343811.4,ENST00000400441.3	chr20	35766292:35766373:35769564:35769717:35772119:35772244,	35769565	35769717	35769587	35769587	Frame_Shift_Del	T	-	p.N489fs
LIHC	TCGA-DD-A3A0-01	MROH8	ENST00000400440.2,ENST00000217333.8,ENST00000421643.1,ENST00000434295.1,ENST00000441008.2,ENST00000343811.4,ENST00000422138.1,ENST00000400441.3	chr20	35788499:35788579:35796523:35796646:35800314:35800460,	35796524	35796646	35796598	35796598	Frame_Shift_Del	G	-	p.Q192fs
LIHC	TCGA-DD-A3A0-01	RPN2	ENST00000237530.6,ENST00000373622.5	chr20	35858393:35858462:35862422:35862498:35864982:35865112,35860698:35860794:35862422:35862498:35864982:35865112,	35862423	35862498	35862458	35862458	Frame_Shift_Del	T	-	p.T571fs
LIHC	TCGA-DD-A3A0-01	GHRH	ENST00000373614.2,ENST00000237527.3	chr20	35879488:35879634:35882612:35882732:35884796:35884901,	35882613	35882732	35882629	35882629	Frame_Shift_Del	G	-	p.L99fs
LIHC	TCGA-DD-A3A0-01	MANBAL	ENST00000397151.1	chr20	35927165:35927282:35929573:35929816:35944710:35945042,	35929574	35929816	35929739	35929739	Frame_Shift_Del	G	-	p.G25fs
LIHC	TCGA-DD-A3A0-01	MANBAL	ENST00000397152.3,ENST00000373605.3,ENST00000397156.3	chr20	35927165:35927282:35929610:35929816:35944710:35945042,	35929611	35929816	35929739	35929739	Frame_Shift_Del	G	-	p.G25fs
LIHC	TCGA-DD-A3A0-01	MANBAL	ENST00000397151.1	chr20	35927165:35927282:35929573:35929816:35944710:35945042,	35929574	35929816	35929760	35929760	Frame_Shift_Del	T	-	p.F32fs
LIHC	TCGA-DD-A3A0-01	MANBAL	ENST00000397152.3,ENST00000373605.3,ENST00000397156.3	chr20	35927165:35927282:35929610:35929816:35944710:35945042,	35929611	35929816	35929760	35929760	Frame_Shift_Del	T	-	p.F32fs
LIHC	TCGA-DD-A3A0-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36639974	36639974	Frame_Shift_Del	A	-	p.Y749fs
LIHC	TCGA-DD-A3A0-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640290	36640290	Frame_Shift_Del	T	-	p.K643fs
LIHC	TCGA-DD-A3A0-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641767	36641767	Frame_Shift_Del	A	-	p.L151fs
LIHC	TCGA-DD-A3A0-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36642031	36642031	Frame_Shift_Del	G	-	p.P63fs
LIHC	TCGA-DD-A3A0-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676769	36676769	Frame_Shift_Del	A	-	p.K102fs
LIHC	TCGA-DD-A3A0-01	KIAA1755	ENST00000279024.4,ENST00000484362.1	chr20	36840877:36842145:36845654:36845876:36846645:36846768,	36845655	36845876	36845804	36845804	Frame_Shift_Del	C	-	p.E918fs
LIHC	TCGA-DD-A3A0-01	ARHGAP40	ENST00000243967.4,ENST00000373345.4	chr20	37263262:37263428:37266350:37266442:37267403:37267481,	37266351	37266442	37266375	37266375	Frame_Shift_Del	T	-	p.L272fs
LIHC	TCGA-DD-A3A0-01	ARHGAP40	ENST00000243967.4,ENST00000373345.4	chr20	37267961:37268029:37270368:37270451:37272346:37272553,	37270369	37270451	37270439	37270439	Frame_Shift_Del	A	-	p.R397fs
LIHC	TCGA-DD-A3A0-01	PPP1R16B	ENST00000299824.1	chr20	37531310:37531435:37534611:37534737:37535621:37535697,	37534612	37534737	37534708	37534708	Frame_Shift_Del	C	-	p.P265fs
LIHC	TCGA-DD-A3A0-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39830928	39830928	Frame_Shift_Del	G	-	p.Q878fs
LIHC	TCGA-DD-A3A0-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39830928	39830928	Frame_Shift_Del	G	-	p.Q878fs
LIHC	TCGA-DD-A3A0-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832204	39832204	Frame_Shift_Del	G	-	p.P451fs
LIHC	TCGA-DD-A3A0-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832204	39832204	Frame_Shift_Del	G	-	p.P451fs
LIHC	TCGA-DD-A3A0-01	LPIN3	ENST00000373257.3	chr20	39978413:39978534:39978694:39979037:39980460:39980560,	39978695	39979037	39978890	39978890	Frame_Shift_Del	C	-	p.P320fs
LIHC	TCGA-DD-A3A0-01	LPIN3	ENST00000373257.3	chr20	39978413:39978534:39978694:39979037:39980460:39980560,	39978695	39979037	39979020	39979020	Frame_Shift_Del	G	-	p.R362fs
LIHC	TCGA-DD-A3A0-01	CHD6	ENST00000373233.3	chr20	40049147:40050719:40052131:40052340:40053817:40054029,	40052132	40052340	40052264	40052264	Frame_Shift_Del	T	-	p.T1475fs
LIHC	TCGA-DD-A3A0-01	PTPRT	ENST00000373198.4,ENST00000356100.2	chr20	40877326:40877462:40899036:40899093:40911128:40911165,	40899037	40899093	40899060	40899060	Frame_Shift_Del	G	-	p.T737fs
LIHC	TCGA-DD-A3A0-01	PTPRT	ENST00000373198.4,ENST00000356100.2	chr20	40877326:40877462:40899036:40899093:40911128:40911165,	40899037	40899093	40899066	40899066	Frame_Shift_Del	G	-	p.P735fs
LIHC	TCGA-DD-A3A0-01	SGK2	ENST00000341458.4,ENST00000426287.1,ENST00000373092.3,ENST00000373077.1,ENST00000423407.3,ENST00000373100.1	chr20	42203548:42203644:42204863:42205019:42208611:42208701,	42204864	42205019	42204938	42204938	Frame_Shift_Del	C	-	p.G256fs
LIHC	TCGA-DD-A3A0-01	SGK2	ENST00000496343.1	chr20	42203548:42203644:42204863:42205023:42208611:42208701,	42204864	42205023	42204938	42204938	Frame_Shift_Del	C	-	p.G256fs
LIHC	TCGA-DD-A3A0-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694397	42694397	Frame_Shift_Del	C	-	p.P318fs
LIHC	TCGA-DD-A3A0-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694616	42694616	Frame_Shift_Del	C	-	p.P392fs
LIHC	TCGA-DD-A3A0-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694668	42694668	Frame_Shift_Del	C	-	p.A408fs
LIHC	TCGA-DD-A3A0-01	HNF4A	ENST00000415691.2,ENST00000457232.1	chr20	43052657:43052894:43056974:43057097:43058162:43058311,	43056975	43057097	43057006	43057006	Frame_Shift_Del	C	-	p.H387fs
LIHC	TCGA-DD-A3A0-01	HNF4A	ENST00000316673.4,ENST00000372920.1,ENST00000316099.4	chr20	43052657:43052894:43056974:43057127:43058162:43058311,	43056975	43057127	43057006	43057006	Frame_Shift_Del	C	-	p.H387fs
LIHC	TCGA-DD-A3A0-01	PABPC1L	ENST00000217073.2,ENST00000537323.1,ENST00000255136.3,ENST00000217074.4	chr20	43541300:43541494:43545396:43545512:43547546:43547686,	43545397	43545512	43545422	43545422	Frame_Shift_Del	G	-	p.R138fs
LIHC	TCGA-DD-A3A0-01	PABPC1L	ENST00000476056.1	chr20	43559161:43559367:43561697:43561826:43564031:43564138,	43561698	43561826	43561750	43561750	Frame_Shift_Del	C	-	p.R10fs
LIHC	TCGA-DD-A3A0-01	PABPC1L	ENST00000537323.1	chr20	43559161:43559367:43561712:43561826:43564031:43564138,	43561713	43561826	43561750	43561750	Frame_Shift_Del	C	-	p.R10fs
LIHC	TCGA-DD-A3A0-01	PABPC1L	ENST00000476056.1	chr20	43559161:43559367:43561697:43561826:43564031:43564138,	43561698	43561826	43561788	43561788	Frame_Shift_Del	C	-	p.T23fs
LIHC	TCGA-DD-A3A0-01	PABPC1L	ENST00000537323.1	chr20	43559161:43559367:43561712:43561826:43564031:43564138,	43561713	43561826	43561788	43561788	Frame_Shift_Del	C	-	p.T23fs
LIHC	TCGA-DD-A3A0-01	STK4	ENST00000396731.4,ENST00000372801.1,ENST00000474717.1,ENST00000372806.3	chr20	43610469:43610584:43615772:43615937:43623730:43623898,	43615773	43615937	43615901	43615901	Frame_Shift_Del	A	-	p.A163fs
LIHC	TCGA-DD-A3A0-01	WFDC3	ENST00000493693.1	chr20	44405713:44405848:44416474:44416621:44417569:44417698,44404149:44404241:44416474:44416621:44420470:44420507,44404149:44404241:44416474:44416621:44417569:44417698,	44416475	44416621	44416587	44416587	Frame_Shift_Del	T	-	p.K82fs
LIHC	TCGA-DD-A3A0-01	PLTP	ENST00000372420.1,ENST00000542937.1,ENST00000372431.3,ENST00000477313.1	chr20	44536479:44536543:44538154:44538310:44538580:44538709,	44538155	44538310	44538240	44538240	Frame_Shift_Del	C	-	p.D134fs
LIHC	TCGA-DD-A3A0-01	PCIF1	ENST00000372409.3,ENST00000479348.1	chr20	44574838:44575023:44575711:44575805:44575901:44576077,	44575712	44575805	44575746	44575746	Frame_Shift_Del	T	-	p.F550fs
LIHC	TCGA-DD-A3A0-01	SLC13A3	ENST00000472148.1,ENST00000417157.2,ENST00000468915.1	chr20	45239084:45239248:45242098:45242364:45279949:45280079,45239084:45239248:45242098:45242364:45298681:45298778,	45242099	45242364	45242226	45242226	Frame_Shift_Del	G	-	p.Q84fs
LIHC	TCGA-DD-A3A0-01	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000317304.6	chr20	45633580:45633723:45644819:45644936:45717877:45718020,45633580:45633723:45644819:45644936:45700823:45700891,	45644820	45644936	45644850	45644850	Frame_Shift_Del	C	-	p.S110fs
LIHC	TCGA-DD-A3A0-01	ZMYND8	ENST00000461685.1,ENST00000262975.4,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000446994.2,ENST00000471951.2	chr20	45839405:45839542:45841286:45841370:45848908:45848975,	45841287	45841370	45841297	45841297	Frame_Shift_Del	G	-	p.P1120fs
LIHC	TCGA-DD-A3A0-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45874790	45874790	Frame_Shift_Del	T	-	p.N729fs
LIHC	TCGA-DD-A3A0-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45874943	45874943	Frame_Shift_Del	T	-	p.K678fs
LIHC	TCGA-DD-A3A0-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000458360.2,ENST00000372023.3,ENST00000540497.1,ENST00000471951.2,ENST00000352431.2	chr20	45938900:45938948:45976599:45976670:45985123:45985240,45938900:45938948:45976599:45976670:45985400:45985414,	45976600	45976670	45976648	45976648	Frame_Shift_Del	T	-	p.T13fs
LIHC	TCGA-DD-A3A0-01	NCOA3	ENST00000372004.3,ENST00000341724.6,ENST00000371997.3,ENST00000371998.3	chr20	46262791:46262939:46264065:46264457:46264634:46265506,	46264066	46264457	46264348	46264348	Frame_Shift_Del	C	-	p.S465fs
LIHC	TCGA-DD-A3A0-01	NCOA3	ENST00000371997.3	chr20	46266391:46266527:46267751:46267946:46268320:46268566,46266391:46266527:46267751:46267946:46268365:46268566,	46267752	46267946	46267849	46267849	Frame_Shift_Del	A	-	p.V870fs
LIHC	TCGA-DD-A3A0-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46295003:46295232:46300941:46301137:46305237:46305367,	46300942	46301137	46300955	46300955	Frame_Shift_Del	T	-	p.K521fs
LIHC	TCGA-DD-A3A0-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46295003:46295232:46300941:46301137:46305237:46305367,	46300942	46301137	46301064	46301064	Frame_Shift_Del	C	-	p.G485fs
LIHC	TCGA-DD-A3A0-01	SULF2	ENST00000361612.4,ENST00000463221.2,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46318869:46319039:46331262:46331414:46365446:46365686,	46331263	46331414	46331322	46331322	Frame_Shift_Del	A	-	p.Y170fs
LIHC	TCGA-DD-A3A0-01	PREX1	ENST00000482556.1,ENST00000396220.1,ENST00000371941.3	chr20	47240792:47242465:47244085:47244153:47244398:47244501,	47244086	47244153	47244125	47244125	Frame_Shift_Del	T	-	p.N1633fs
LIHC	TCGA-DD-A3A0-01	ARFGEF2	ENST00000371917.4	chr20	47557735:47557766:47558400:47558524:47567859:47568006,	47558401	47558524	47558422	47558422	Frame_Shift_Del	A	-	p.P58fs
LIHC	TCGA-DD-A3A0-01	ARFGEF2	ENST00000371917.4	chr20	47567859:47568006:47569241:47569421:47570092:47570327,	47569242	47569421	47569372	47569372	Frame_Shift_Del	C	-	p.T185fs
LIHC	TCGA-DD-A3A0-01	ARFGEF2	ENST00000371917.4	chr20	47588862:47588962:47589681:47589821:47591302:47591411,	47589682	47589821	47589782	47589782	Frame_Shift_Del	G	-	p.Q542fs
LIHC	TCGA-DD-A3A0-01	CSE1L	ENST00000469700.1,ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47708582:47708664:47710676:47710823:47711268:47711500,	47710677	47710823	47710697	47710697	Frame_Shift_Del	A	-	p.E823fs
LIHC	TCGA-DD-A3A0-01	STAU1	ENST00000371828.3,ENST00000340954.7,ENST00000371802.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47736518:47736665:47739628:47739772:47740911:47741124,	47739629	47739772	47739743	47739743	Frame_Shift_Del	C	-	p.G209fs
LIHC	TCGA-DD-A3A0-01	STAU1	ENST00000371792.1	chr20	47736518:47736665:47739628:47739766:47740911:47741124,	47739629	47739766	47739743	47739743	Frame_Shift_Del	C	-	p.G209fs
LIHC	TCGA-DD-A3A0-01	DDX27	ENST00000371764.4	chr20	47850104:47850246:47851471:47851625:47852686:47852768,	47851472	47851625	47851563	47851563	Frame_Shift_Del	G	-	p.M486fs
LIHC	TCGA-DD-A3A0-01	ZNFX1	ENST00000396105.1,ENST00000371752.1	chr20	47862436:47866248:47868063:47868159:47869256:47869367,	47868064	47868159	47868120	47868120	Frame_Shift_Del	G	-	p.H1086fs
LIHC	TCGA-DD-A3A0-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371744.1,ENST00000371752.1	chr20	47882671:47882803:47886478:47888287:47892315:47892416,	47886479	47888287	47887459	47887459	Frame_Shift_Del	T	-	p.K297fs
LIHC	TCGA-DD-A3A0-01	PTGIS	ENST00000478971.1,ENST00000244043.4	chr20	48124520:48124601:48127564:48127716:48129616:48129798,	48127565	48127716	48127617	48127617	Frame_Shift_Del	C	-	p.A436fs
LIHC	TCGA-DD-A3A0-01	SLC9A8	ENST00000361573.2,ENST00000541138.1,ENST00000417961.1	chr20	48439597:48439678:48456077:48456136:48461572:48461656,	48456078	48456136	48456116	48456116	Frame_Shift_Del	A	-	p.K111fs
LIHC	TCGA-DD-A3A0-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520492	49520492	Frame_Shift_Del	T	-	p.K14fs
LIHC	TCGA-DD-A3A0-01	DPM1	ENST00000371588.5	chr20	49557665:49557746:49558567:49558663:49562273:49562299,49557401:49557470:49558567:49558663:49562273:49562299,	49558568	49558663	49558575	49558575	Frame_Shift_Del	T	-	p.I164fs
LIHC	TCGA-DD-A3A0-01	NFATC2	ENST00000609943.1,ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000396009.3,ENST00000610033.1	chr20	50052242:50052298:50071084:50071225:50090516:50090689,	50071085	50071225	50071174	50071174	Frame_Shift_Del	C	-	p.S587fs
LIHC	TCGA-DD-A3A0-01	ATP9A	ENST00000402822.1,ENST00000338821.5	chr20	50342357:50342471:50346372:50346517:50384840:50384867,	50346373	50346517	50346423	50346423	Frame_Shift_Del	G	-	p.R55fs
LIHC	TCGA-DD-A3A0-01	ZFP64	ENST00000371515.4,ENST00000461898.1,ENST00000216923.4,ENST00000361387.2,ENST00000371518.2	chr20	50781233:50781296:50782402:50782564:50803370:50803604,	50782403	50782564	50782424	50782424	Frame_Shift_Del	T	-	p.R143fs
LIHC	TCGA-DD-A3A0-01	ZNF217	ENST00000371471.2,ENST00000302342.3	chr20	52193693:52193819:52194872:52194989:52197999:52199636,	52194873	52194989	52194923	52194923	Frame_Shift_Del	T	-	p.K478fs
LIHC	TCGA-DD-A3A0-01	ZNF217	ENST00000371471.2,ENST00000302342.3	chr20	52193693:52193819:52194872:52194989:52197999:52199636,	52194873	52194989	52194961	52194961	Frame_Shift_Del	T	-	p.K465fs
LIHC	TCGA-DD-A3A0-01	PFDN4	ENST00000441080.2	chr20	52824633:52824663:52830889:52830997:52831838:52831979,	52830890	52830997	52830934	52830934	Frame_Shift_Del	A	-	p.I23fs
LIHC	TCGA-DD-A3A0-01	AURKA	ENST00000395909.4,ENST00000395907.1,ENST00000371356.2,ENST00000312783.6,ENST00000395911.1,ENST00000395914.1,ENST00000395915.3,ENST00000347343.2,ENST00000441357.1,ENST00000422322.1,ENST00000420474.1,ENST00000395913.3	chr20	54958166:54958232:54959325:54959380:54961312:54961589,	54959326	54959380	54959341	54959341	Frame_Shift_Del	T	-	p.N120fs
LIHC	TCGA-DD-A3A0-01	CASS4	ENST00000371336.3,ENST00000360314.3	chr20	55025654:55025735:55026874:55028185:55033395:55033836,	55026875	55028185	55027019	55027019	Frame_Shift_Del	T	-	p.F263fs
LIHC	TCGA-DD-A3A0-01	BMP7	ENST00000395863.3,ENST00000460817.1,ENST00000395864.3	chr20	55746094:55746164:55748255:55748366:55749986:55750063,	55748256	55748366	55748318	55748318	Frame_Shift_Del	C	-	p.E362fs
LIHC	TCGA-DD-A3A0-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099187	56099187	Frame_Shift_Del	T	-	p.K25fs
LIHC	TCGA-DD-A3A0-01	PPP4R1L	ENST00000334187.8,ENST00000422302.1,ENST00000244070.3,ENST00000495058.1,ENST00000493688.1	chr20	56822377:56822562:56823170:56823329:56825942:56826008,	56823171	56823329	56823235	56823235	Frame_Shift_Del	G	-	p.P235fs
LIHC	TCGA-DD-A3A0-01	RAB22A	ENST00000244040.3	chr20	56886105:56886178:56918773:56918855:56928328:56928400,	56918774	56918855	56918806	56918806	Frame_Shift_Del	A	-	p.Q50fs
LIHC	TCGA-DD-A3A0-01	GNAS	ENST00000482112.1,ENST00000419558.1,ENST00000476935.1,ENST00000450130.1,ENST00000480975.1,ENST00000265620.7	chr20	57470666:57470739:57478585:57478640:57478726:57478829,	57478586	57478640	57478626	57478626	Frame_Shift_Del	A	-	p.K743fs
LIHC	TCGA-DD-A3A0-01	GNAS	ENST00000462499.1,ENST00000306090.10,ENST00000371102.4,ENST00000488546.1,ENST00000478585.1,ENST00000371095.3,ENST00000468895.1,ENST00000485673.1,ENST00000487862.1,ENST00000467227.1,ENST00000492907.1	chr20	57470666:57470739:57478582:57478640:57478726:57478829,	57478583	57478640	57478626	57478626	Frame_Shift_Del	A	-	p.K743fs
LIHC	TCGA-DD-A3A0-01	NELFCD	ENST00000460601.1,ENST00000344018.3,ENST00000474543.1,ENST00000602795.1	chr20	57564558:57564695:57564912:57565043:57565964:57566130,	57564913	57565043	57564987	57564987	Frame_Shift_Del	G	-	p.Q262fs
LIHC	TCGA-DD-A3A0-01	NELFCD	ENST00000477741.1	chr20	57564558:57564695:57564912:57565287:57565964:57566130,	57564913	57565287	57564987	57564987	Frame_Shift_Del	G	-	p.Q262fs
LIHC	TCGA-DD-A3A0-01	EDN3	ENST00000371028.2,ENST00000395654.3,ENST00000371025.3,ENST00000311585.7	chr20	57875757:57875919:57876464:57876777:57896071:57896248,	57876465	57876777	57876519	57876519	Frame_Shift_Del	C	-	p.A36fs
LIHC	TCGA-DD-A3A0-01	PHACTR3	ENST00000361300.4,ENST00000359926.3,ENST00000492611.1,ENST00000355648.4,ENST00000371015.1,ENST00000395636.2,ENST00000541461.1,ENST00000395639.4	chr20	58415427:58415485:58416449:58416590:58420243:58420320,	58416450	58416590	58416488	58416488	Frame_Shift_Del	A	-	p.R495fs
LIHC	TCGA-DD-A3A0-01	SYCP2	ENST00000357552.3,ENST00000371001.2,ENST00000412613.1	chr20	58440861:58440920:58441347:58441447:58441549:58441644,	58441348	58441447	58441387	58441387	Frame_Shift_Del	T	-	p.K1427fs
LIHC	TCGA-DD-A3A0-01	SYCP2	ENST00000357552.3,ENST00000371001.2,ENST00000412613.1	chr20	58440861:58440920:58441347:58441447:58441549:58441644,	58441348	58441447	58441397	58441397	Frame_Shift_Del	T	-	p.N1424fs
LIHC	TCGA-DD-A3A0-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58490519:58490605:58491540:58491626:58494212:58494237,	58491541	58491626	58491619	58491619	Frame_Shift_Del	T	-	p.K145fs
LIHC	TCGA-DD-A3A0-01	CDH26	ENST00000244047.5,ENST00000348616.4	chr20	58559693:58559860:58560055:58560184:58562507:58562693,	58560056	58560184	58560062	58560062	Frame_Shift_Del	C	-	p.P239fs
LIHC	TCGA-DD-A3A0-01	TAF4	ENST00000252996.4,ENST00000436129.2,ENST00000488539.1	chr20	60575623:60575777:60578215:60578330:60578786:60578934,	60578216	60578330	60578249	60578249	Frame_Shift_Del	T	-	p.N818fs
LIHC	TCGA-DD-A3A0-01	LSM14B	ENST00000253001.4,ENST00000279068.6	chr20	60706411:60706562:60708345:60708531:60709218:60710434,	60708346	60708531	60708481	60708481	Frame_Shift_Del	C	-	p.N374fs
LIHC	TCGA-DD-A3A0-01	LAMA5	ENST00000252999.3	chr20	60908619:60908762:60908956:60909095:60909241:60909398,	60908957	60909095	60908999	60908999	Frame_Shift_Del	C	-	p.V946fs
LIHC	TCGA-DD-A3A0-01	RPS21	ENST00000492356.2,ENST00000343986.4,ENST00000450116.2	chr20	60962666:60962730:60962898:60962970:60963364:60963407,	60962899	60962970	60962935	60962935	Frame_Shift_Del	A	-	p.K51fs
LIHC	TCGA-DD-A3A0-01	COL9A3	ENST00000343916.3,ENST00000489045.1,ENST00000463487.1	chr20	61457168:61457222:61457555:61457609:61458118:61458172,	61457556	61457609	61457601	61457601	Frame_Shift_Del	G	-	p.G244fs
LIHC	TCGA-DD-A3A0-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61833852	61833852	Frame_Shift_Del	A	-	p.F480fs
LIHC	TCGA-DD-A3A0-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61835054	61835054	Frame_Shift_Del	C	-	p.D80fs
LIHC	TCGA-DD-A3A0-01	ARFGAP1	ENST00000519604.1,ENST00000353546.3,ENST00000547204.1	chr20	61916217:61916274:61917005:61917065:61917717:61917750,61916217:61916274:61917005:61917065:61917723:61917794,	61917006	61917065	61917022	61917022	Frame_Shift_Del	T	-	p.I264fs
LIHC	TCGA-DD-A3A0-01	ARFGAP1	ENST00000520485.1,ENST00000518794.2,ENST00000370283.4,ENST00000523460.1,ENST00000519273.2,ENST00000549047.1,ENST00000468975.2	chr20	61917005:61917065:61917717:61917794:61918915:61919040,	61917718	61917794	61917760	61917760	Frame_Shift_Del	T	-	p.P372fs
LIHC	TCGA-DD-A3A0-01	ARFGAP1	ENST00000519604.1,ENST00000353546.3,ENST00000547204.1	chr20	61917005:61917065:61917723:61917794:61918915:61919040,	61917724	61917794	61917760	61917760	Frame_Shift_Del	T	-	p.P372fs
LIHC	TCGA-DD-A3A0-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000358894.6,ENST00000455906.1,ENST00000415763.1,ENST00000326996.6,ENST00000471582.1,ENST00000422202.1	chr20	61957447:61957501:61958103:61958175:61959303:61959339,	61958104	61958175	61958112	61958112	Frame_Shift_Del	G	-	p.Q1162fs
LIHC	TCGA-DD-A3A0-01	KCNQ2	ENST00000354587.3	chr20	62039765:62039889:62043127:62043235:62044802:62044934,62039765:62039889:62043127:62043235:62044760:62044766,	62043128	62043235	62043158	62043158	Frame_Shift_Del	G	-	p.P587fs
LIHC	TCGA-DD-A3A0-01	KCNQ2	ENST00000359125.2,ENST00000359689.1	chr20	62046255:62046479:62050971:62051025:62055529:62055559,	62050972	62051025	62051004	62051004	Frame_Shift_Del	C	-	p.G423fs
LIHC	TCGA-DD-A3A0-01	KCNQ2	ENST00000359125.2,ENST00000344462.4,ENST00000357249.2,ENST00000359689.1	chr20	62059719:62059788:62062692:62062722:62065161:62065256,	62062693	62062722	62062700	62062700	Frame_Shift_Del	C	-	p.A381fs
LIHC	TCGA-DD-A3A0-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62597493:62598134:62598228:62598357:62598733:62598876,	62598229	62598357	62598309	62598309	Frame_Shift_Del	C	-	p.V105fs
LIHC	TCGA-DD-A3A0-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62598228:62598357:62598733:62598876:62599182:62599305,	62598734	62598876	62598777	62598777	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A3A0-01	TCEA2	ENST00000458442.1,ENST00000361317.2,ENST00000343484.5,ENST00000465111.1,ENST00000339217.4,ENST00000470559.1,ENST00000395053.3,ENST00000487164.1,ENST00000440819.1	chr20	62698267:62698373:62699399:62699487:62700713:62700725,	62699400	62699487	62699427	62699427	Frame_Shift_Del	G	-	p.R90fs
LIHC	TCGA-DD-A3A0-01	OPRL1	ENST00000355631.4	chr20	62711548:62711705:62724040:62724306:62729154:62729510,	62724041	62724306	62724080	62724080	Frame_Shift_Del	C	-	p.P3fs
LIHC	TCGA-DD-A3A0-01	CXADR	ENST00000306618.10	chr21	18931293:18931449:18933655:18933794:18937745:18937805,	18933656	18933794	18933770	18933770	Frame_Shift_Del	A	-	p.E270fs
LIHC	TCGA-DD-A3A0-01	CXADR	ENST00000400169.1	chr21	18933655:18933794:18937745:18937929:18965469:18965897,	18937746	18937929	18937770	18937770	Frame_Shift_Del	C	-	p.S286fs
LIHC	TCGA-DD-A3A0-01	MRPL39	ENST00000419219.1,ENST00000352957.4,ENST00000307301.7	chr21	26973679:26973779:26976107:26976247:26978760:26978967,	26976108	26976247	26976139	26976139	Frame_Shift_Del	A	-	p.F130fs
LIHC	TCGA-DD-A3A0-01	USP16	ENST00000399976.2,ENST00000535828.1,ENST00000399975.3,ENST00000334352.4	chr21	30414835:30414849:30415743:30415920:30418987:30419642,	30415744	30415920	30415885	30415885	Frame_Shift_Del	A	-	p.K442fs
LIHC	TCGA-DD-A3A0-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699501	30699501	Frame_Shift_Del	T	-	p.T452fs
LIHC	TCGA-DD-A3A0-01	GRIK1	ENST00000399909.1,ENST00000399914.1,ENST00000389125.3,ENST00000327783.4,ENST00000399907.1,ENST00000389124.2,ENST00000309434.7,ENST00000399913.1,ENST00000535441.1	chr21	30927372:30927623:30933944:30934170:30949283:30949501,	30933945	30934170	30933986	30933986	Frame_Shift_Del	C	-	p.G757fs
LIHC	TCGA-DD-A3A0-01	URB1	ENST00000382751.3	chr21	33725018:33725215:33726241:33726412:33727167:33727306,	33726242	33726412	33726389	33726389	Frame_Shift_Del	G	-	p.L757fs
LIHC	TCGA-DD-A3A0-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34925402	34925402	Frame_Shift_Del	C	-	p.P1289fs
LIHC	TCGA-DD-A3A0-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000379960.5,ENST00000399326.3,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1	chr21	35172226:35172233:35183278:35183526:35186216:35186376,	35183279	35183526	35183376	35183376	Frame_Shift_Del	A	-	p.E806fs
LIHC	TCGA-DD-A3A0-01	SETD4	ENST00000481477.1	chr21	37416079:37416254:37417879:37418309:37420605:37420694,37416079:37416254:37417879:37418309:37425880:37425918,	37417880	37418309	37417967	37417967	Frame_Shift_Del	G	-	p.P213fs
LIHC	TCGA-DD-A3A0-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37732481:37732556:37734480:37734526:37736390:37736557,	37734481	37734526	37734489	37734489	Frame_Shift_Del	A	-	p.E472fs
LIHC	TCGA-DD-A3A0-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38302550:38302733:38308748:38309692:38311131:38311294,	38308749	38309692	38309022	38309022	Frame_Shift_Del	C	-	p.G241fs
LIHC	TCGA-DD-A3A0-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000492275.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000463216.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38480691:38480746:38494116:38494279:38495282:38495328,	38494117	38494279	38494193	38494193	Frame_Shift_Del	A	-	p.Q326fs
LIHC	TCGA-DD-A3A0-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38538539	38538539	Frame_Shift_Del	T	-	p.G1341fs
LIHC	TCGA-DD-A3A0-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555127	38555127	Frame_Shift_Del	A	-	p.K1558fs
LIHC	TCGA-DD-A3A0-01	ERG	ENST00000453032.2,ENST00000288319.7,ENST00000417133.2,ENST00000398919.2	chr21	39767355:39767502:39772495:39772567:39774478:39774559,39764297:39764366:39772495:39772567:39774478:39774559,	39772496	39772567	39772564	39772564	Frame_Shift_Del	C	-	p.G233fs
LIHC	TCGA-DD-A3A0-01	ETS2	ENST00000360214.3,ENST00000360938.3	chr21	40177894:40178044:40181958:40182030:40184926:40185038,	40181959	40182030	40181996	40181996	Frame_Shift_Del	C	-	p.A13fs
LIHC	TCGA-DD-A3A0-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40794981	40794981	Frame_Shift_Del	T	-	p.N253fs
LIHC	TCGA-DD-A3A0-01	BACE2	ENST00000328735.6,ENST00000347667.5	chr21	42539727:42540502:42598192:42598281:42609439:42609656,	42598193	42598281	42598234	42598234	Frame_Shift_Del	G	-	p.V118fs
LIHC	TCGA-DD-A3A0-01	TMPRSS2	ENST00000398585.3,ENST00000458356.1,ENST00000332149.5	chr21	42837935:42838080:42839660:42839813:42840322:42840465,	42839661	42839813	42839756	42839756	Frame_Shift_Del	C	-	p.D495fs
LIHC	TCGA-DD-A3A0-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413721	43413721	Frame_Shift_Del	T	-	p.T162fs
LIHC	TCGA-DD-A3A0-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413768	43413768	Frame_Shift_Del	T	-	p.K146fs
LIHC	TCGA-DD-A3A0-01	UBASH3A	ENST00000291535.6,ENST00000473381.1,ENST00000398367.1	chr21	43833518:43833632:43836550:43836720:43838509:43838718,43833132:43833331:43836550:43836720:43838509:43838718,	43836551	43836720	43836574	43836574	Frame_Shift_Del	A	-	p.K231fs
LIHC	TCGA-DD-A3A0-01	PDE9A	ENST00000335512.4,ENST00000398227.3,ENST00000490803.1,ENST00000467403.1,ENST00000335440.6,ENST00000470987.1,ENST00000398229.3,ENST00000539837.1,ENST00000398225.3,ENST00000468805.1,ENST00000398224.3,ENST00000380328.2,ENST00000398234.3,ENST00000349112.3,ENST00000398232.3,ENST00000460905.1,ENST00000328862.6,ENST00000462571.1,ENST00000398236.3,ENST00000291539.6,ENST00000497805.1	chr21	44153467:44153536:44163885:44163970:44171225:44171307,	44163886	44163970	44163943	44163943	Frame_Shift_Del	G	-	p.R209fs
LIHC	TCGA-DD-A3A0-01	WDR4	ENST00000470658.1,ENST00000330317.2,ENST00000398208.2	chr21	44283549:44283706:44293660:44293801:44296811:44296877,	44293661	44293801	44293677	44293677	Frame_Shift_Del	G	-	p.Q94fs
LIHC	TCGA-DD-A3A0-01	PDXK	ENST00000327574.4	chr21	45148797:45148891:45152019:45152528:45153949:45154004,	45152020	45152528	45152386	45152386	Frame_Shift_Del	A	-	p.E43fs
LIHC	TCGA-DD-A3A0-01	AGPAT3	ENST00000479117.1,ENST00000398058.1,ENST00000398063.2,ENST00000291572.8,ENST00000422850.1,ENST00000327505.2,ENST00000457068.1,ENST00000467358.1,ENST00000398061.1,ENST00000546158.1	chr21	45387826:45387996:45388998:45389160:45390533:45390687,	45388999	45389160	45389103	45389103	Frame_Shift_Del	C	-	p.D151fs
LIHC	TCGA-DD-A3A0-01	PWP2	ENST00000486126.1,ENST00000291576.7,ENST00000456705.1	chr21	45534505:45534649:45535144:45535280:45535571:45535625,	45535145	45535280	45535226	45535226	Frame_Shift_Del	G	-	p.L184fs
LIHC	TCGA-DD-A3A0-01	DNMT3L	ENST00000418993.1,ENST00000431166.1,ENST00000270172.3	chr21	45671505:45671581:45674499:45674588:45675949:45676037,	45674500	45674588	45674549	45674549	Frame_Shift_Del	G	-	p.P215fs
LIHC	TCGA-DD-A3A0-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46595972	46595972	Frame_Shift_Del	T	-	p.V119fs
LIHC	TCGA-DD-A3A0-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47538943:47539033:47539701:47539764:47540428:47540491,	47539702	47539764	47539716	47539716	Frame_Shift_Del	C	-	p.D428fs
LIHC	TCGA-DD-A3A0-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000467026.1,ENST00000291688.1	chr21	47666220:47666318:47666541:47666800:47671442:47671596,	47666542	47666800	47666705	47666705	Frame_Shift_Del	G	-	p.P1462fs
LIHC	TCGA-DD-A3A0-01	MCM3AP	ENST00000486937.1	chr21	47664720:47665111:47666220:47666800:47671442:47671596,	47666221	47666800	47666705	47666705	Frame_Shift_Del	G	-	p.P1462fs
LIHC	TCGA-DD-A3A0-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863725	47863725	Frame_Shift_Del	C	-	p.P3235fs
LIHC	TCGA-DD-A3A0-01	DIP2A	ENST00000400274.1,ENST00000435722.3,ENST00000457905.3,ENST00000427143.2,ENST00000417564.2,ENST00000318711.7,ENST00000494435.1,ENST00000466639.1,ENST00000473752.1	chr21	47957358:47957452:47958395:47958515:47959789:47959904,	47958396	47958515	47958511	47958511	Frame_Shift_Del	C	-	p.N640fs
LIHC	TCGA-DD-A3A0-01	PRMT2	ENST00000451211.2,ENST00000355680.3,ENST00000481861.1,ENST00000397638.2,ENST00000397637.1,ENST00000482508.1	chr21	48068419:48068531:48069486:48069651:48084206:48084857,48068419:48068531:48069486:48069651:48083294:48083466,48068435:48068531:48069486:48069651:48078656:48078832,	48069487	48069651	48069632	48069632	Frame_Shift_Del	G	-	p.W212fs
LIHC	TCGA-DD-A3A0-01	PRMT2	ENST00000451211.2	chr21	48069486:48069651:48078656:48078832:48080744:48080874,48069609:48069651:48078656:48078832:48084206:48084857,	48078657	48078832	48078714	48078714	Frame_Shift_Del	G	-	p.G238fs
LIHC	TCGA-DD-A3A0-01	GAB4	ENST00000400588.1	chr22	17449187:17449273:17450832:17451083:17468849:17469006,	17450833	17451083	17451061	17451061	Frame_Shift_Del	A	-	p.S237fs
LIHC	TCGA-DD-A3A0-01	ATP6V1E1	ENST00000399796.2,ENST00000460085.1,ENST00000478963.1	chr22	18095976:18096086:18102226:18102292:18111368:18111499,	18102227	18102292	18102248	18102248	Frame_Shift_Del	T	-	p.K26fs
LIHC	TCGA-DD-A3A0-01	BCL2L13	ENST00000399782.1,ENST00000493680.1,ENST00000317582.5	chr22	18165979:18166087:18171751:18171908:18209442:18210300,18165979:18166087:18171751:18171908:18178906:18178975,	18171752	18171908	18171792	18171792	Frame_Shift_Del	G	-	p.V90fs
LIHC	TCGA-DD-A3A0-01	BCL2L13	ENST00000538149.1	chr22	18165979:18166087:18185008:18185152:18209442:18210300,18171839:18171908:18185008:18185152:18209442:18209734,18178906:18178976:18185008:18185152:18209442:18209734,18138477:18138598:18185008:18185152:18209442:18210300,	18185009	18185152	18185113	18185113	Frame_Shift_Del	G	-	p.E187fs
LIHC	TCGA-DD-A3A0-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300090	18300090	Frame_Shift_Del	G	-	p.P1779fs
LIHC	TCGA-DD-A3A0-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300125	18300125	Frame_Shift_Del	C	-	p.A1768fs
LIHC	TCGA-DD-A3A0-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300311	18300311	Frame_Shift_Del	G	-	p.R1707fs
LIHC	TCGA-DD-A3A0-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301214	18301214	Frame_Shift_Del	G	-	p.R1405fs
LIHC	TCGA-DD-A3A0-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301475	18301475	Frame_Shift_Del	G	-	p.L1318fs
LIHC	TCGA-DD-A3A0-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301788	18301788	Frame_Shift_Del	G	-	p.P1213fs
LIHC	TCGA-DD-A3A0-01	MICAL3	ENST00000429452.1,ENST00000585038.1	chr22	18362111:18362168:18363970:18364069:18368643:18368817,	18363971	18364069	18364031	18364031	Frame_Shift_Del	T	-	p.K760fs
LIHC	TCGA-DD-A3A0-01	PRODH	ENST00000482858.1,ENST00000357068.6	chr22	18913200:18913235:18918502:18918711:18923527:18923655,	18918503	18918711	18918624	18918624	Frame_Shift_Del	C	-	p.E121fs
LIHC	TCGA-DD-A3A0-01	PRODH	ENST00000420436.1	chr22	18913200:18913235:18918502:18918694:18923682:18923809,	18918503	18918694	18918624	18918624	Frame_Shift_Del	C	-	p.E121fs
LIHC	TCGA-DD-A3A0-01	DGCR2	ENST00000467659.1,ENST00000537045.1,ENST00000263196.7,ENST00000545799.1,ENST00000389262.4	chr22	19029319:19029472:19035952:19036156:19044498:19044566,	19035953	19036156	19036091	19036091	Frame_Shift_Del	C	-	p.D291fs
LIHC	TCGA-DD-A3A0-01	SEPT5	ENST00000412544.1,ENST00000455843.1,ENST00000455784.2,ENST00000383045.3,ENST00000470814.1,ENST00000431044.1	chr22	19708290:19708392:19709162:19709259:19709344:19709480,	19709163	19709259	19709221	19709221	Frame_Shift_Del	G	-	p.R268fs
LIHC	TCGA-DD-A3A0-01	ARVCF	ENST00000406522.1,ENST00000263207.3,ENST00000344269.3,ENST00000406259.1,ENST00000401994.1	chr22	19966419:19966603:19967265:19967765:19968733:19969260,	19967266	19967765	19967543	19967543	Frame_Shift_Del	G	-	p.P373fs
LIHC	TCGA-DD-A3A0-01	TRMT2A	ENST00000252136.7,ENST00000439169.2,ENST00000492988.1,ENST00000404751.3,ENST00000494820.1,ENST00000403707.3	chr22	20102487:20102602:20102788:20102970:20103194:20103211,	20102789	20102970	20102879	20102879	Frame_Shift_Del	C	-	p.G268fs
LIHC	TCGA-DD-A3A0-01	RANBP1	ENST00000448394.1,ENST00000331821.3	chr22	20112830:20112959:20113825:20113891:20114477:20114558,20112830:20112959:20113825:20113891:20114474:20114704,	20113826	20113891	20113864	20113864	Frame_Shift_Del	A	-	p.K70fs
LIHC	TCGA-DD-A3A0-01	DGCR6L	ENST00000248879.3	chr22	20302858:20302999:20303641:20303742:20307161:20307309,	20303642	20303742	20303718	20303718	Frame_Shift_Del	T	-	p.K99fs
LIHC	TCGA-DD-A3A0-01	MED15	ENST00000542773.1	chr22	20938645:20938712:20939141:20939554:20940014:20940113,	20939142	20939554	20939390	20939390	Frame_Shift_Del	C	-	p.A656fs
LIHC	TCGA-DD-A3A0-01	PI4KA	ENST00000477245.1,ENST00000572273.1,ENST00000414196.3,ENST00000255882.6	chr22	21080785:21080829:21081517:21081685:21082061:21082152,	21081518	21081685	21081608	21081608	Frame_Shift_Del	T	-	p.P1618fs
LIHC	TCGA-DD-A3A0-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21088330:21088482:21088682:21088841:21096515:21096643,	21088683	21088841	21088754	21088754	Frame_Shift_Del	G	-	p.L1277fs
LIHC	TCGA-DD-A3A0-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21088330:21088482:21088682:21088841:21096515:21096643,	21088683	21088841	21088781	21088781	Frame_Shift_Del	A	-	p.S1268fs
LIHC	TCGA-DD-A3A0-01	PI4KA	ENST00000572273.1,ENST00000485963.1	chr22	21188849:21188943:21192902:21193019:21212857:21213070,	21192903	21193019	21192924	21192924	Frame_Shift_Del	A	-	p.F84fs
LIHC	TCGA-DD-A3A0-01	LZTR1	ENST00000389355.3	chr22	21340133:21340186:21341792:21341872:21342298:21342407,21337315:21337378:21341792:21341872:21342298:21342407,	21341793	21341872	21341819	21341819	Frame_Shift_Del	C	-	p.A116fs
LIHC	TCGA-DD-A3A0-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384437	21384437	Frame_Shift_Del	G	-	p.L396fs
LIHC	TCGA-DD-A3A0-01	PPM1F	ENST00000397495.4	chr22	22293903:22294052:22300214:22300480:22307163:22307193,	22300215	22300480	22300356	22300356	Frame_Shift_Del	A	-	p.F22fs
LIHC	TCGA-DD-A3A0-01	PPM1F	ENST00000397495.4	chr22	22293903:22294052:22300214:22300480:22307163:22307193,	22300215	22300480	22300404	22300404	Frame_Shift_Del	G	-	p.P6fs
LIHC	TCGA-DD-A3A0-01	PRAME	ENST00000406503.1	chr22	22893273:22893511:22899231:22899506:22899964:22900000,	22899232	22899506	22899236	22899236	Frame_Shift_Del	A	-	p.L6fs
LIHC	TCGA-DD-A3A0-01	PRAME	ENST00000439106.1	chr22	22893273:22893511:22899231:22899397:22899964:22900000,	22899232	22899397	22899236	22899236	Frame_Shift_Del	A	-	p.L6fs
LIHC	TCGA-DD-A3A0-01	PRAME	ENST00000398743.2,ENST00000420709.1,ENST00000403441.1,ENST00000398741.1	chr22	22893273:22893511:22899231:22899350:22899964:22900000,	22899232	22899350	22899236	22899236	Frame_Shift_Del	A	-	p.L6fs
LIHC	TCGA-DD-A3A0-01	PRAME	ENST00000405655.3,ENST00000402697.1	chr22	22893273:22893511:22899231:22899329:22899964:22900000,	22899232	22899329	22899236	22899236	Frame_Shift_Del	A	-	p.L6fs
LIHC	TCGA-DD-A3A0-01	GSTT2B	ENST00000290765.4	chr22	24299805:24300119:24300471:24300645:24300737:24300888,	24300472	24300645	24300570	24300570	Frame_Shift_Del	G	-	p.L143fs
LIHC	TCGA-DD-A3A0-01	GSTT2B	ENST00000404172.3	chr22	24299805:24300119:24300513:24300645:24300737:24300888,	24300514	24300645	24300570	24300570	Frame_Shift_Del	G	-	p.L143fs
LIHC	TCGA-DD-A3A0-01	GSTT2B	ENST00000290765.4	chr22	24299805:24300119:24300471:24300645:24300737:24300888,	24300472	24300645	24300576	24300576	Frame_Shift_Del	G	-	p.Q141fs
LIHC	TCGA-DD-A3A0-01	GSTT2B	ENST00000404172.3	chr22	24299805:24300119:24300513:24300645:24300737:24300888,	24300514	24300645	24300576	24300576	Frame_Shift_Del	G	-	p.Q141fs
LIHC	TCGA-DD-A3A0-01	GSTT2	ENST00000402588.3	chr22	24324888:24324969:24325061:24325193:24325587:24325797,	24325062	24325193	24325095	24325095	Frame_Shift_Del	A	-	p.K129fs
LIHC	TCGA-DD-A3A0-01	GSTT2	ENST00000215780.5	chr22	24324888:24324969:24325061:24325235:24325587:24325797,	24325062	24325235	24325095	24325095	Frame_Shift_Del	A	-	p.K129fs
LIHC	TCGA-DD-A3A0-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24480531:24480738:24480958:24481104:24483404:24483666,	24480959	24481104	24481040	24481040	Frame_Shift_Del	A	-	p.K1067fs
LIHC	TCGA-DD-A3A0-01	GGT5	ENST00000327365.4,ENST00000425408.1,ENST00000263112.7	chr22	24621212:24621379:24621513:24621620:24622043:24622080,	24621514	24621620	24621537	24621537	Frame_Shift_Del	C	-	p.G438fs
LIHC	TCGA-DD-A3A0-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622210	24622210	Frame_Shift_Del	C	-	p.E355fs
LIHC	TCGA-DD-A3A0-01	GGT1	ENST00000425895.1,ENST00000447416.1,ENST00000411974.1,ENST00000430289.1,ENST00000432867.1,ENST00000452551.1,ENST00000406383.2,ENST00000248923.4,ENST00000412658.1,ENST00000400380.1,ENST00000451366.1,ENST00000428855.1,ENST00000400382.1,ENST00000400383.1,ENST00000419133.1	chr22	25007044:25007212:25010742:25010873:25011007:25011038,	25010743	25010873	25010834	25010834	Frame_Shift_Del	G	-	p.G88fs
LIHC	TCGA-DD-A3A0-01	SRRD	ENST00000477945.1,ENST00000215917.7	chr22	26884355:26884454:26886009:26886164:26886990:26887036,	26886010	26886164	26886031	26886031	Frame_Shift_Del	G	-	p.G211fs
LIHC	TCGA-DD-A3A0-01	TFIP11	ENST00000472918.1,ENST00000407148.1	chr22	26902843:26902894:26906029:26906247:26908064:26908141,	26906030	26906247	26906041	26906041	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-DD-A3A0-01	TPST2	ENST00000398110.2,ENST00000403880.1,ENST00000338754.4	chr22	26928660:26928711:26932253:26932452:26936754:26936837,	26932254	26932452	26932373	26932373	Frame_Shift_Del	C	-	p.D308fs
LIHC	TCGA-DD-A3A0-01	PITPNB	ENST00000320996.10,ENST00000477861.1,ENST00000415296.1,ENST00000455418.3,ENST00000335272.5,ENST00000436663.1	chr22	28269762:28269803:28290542:28290626:28292539:28292614,	28290543	28290626	28290596	28290596	Frame_Shift_Del	T	-	p.T135fs
LIHC	TCGA-DD-A3A0-01	TTC28	ENST00000397906.2	chr22	28501266:28501790:28503049:28504391:28559079:28559587,	28503050	28504391	28503720	28503720	Frame_Shift_Del	G	-	p.Q705fs
LIHC	TCGA-DD-A3A0-01	TTC28	ENST00000397906.2	chr22	28501266:28501790:28503049:28504391:28559079:28559587,	28503050	28504391	28504171	28504171	Frame_Shift_Del	G	-	p.A554fs
LIHC	TCGA-DD-A3A0-01	TTC28	ENST00000490475.1,ENST00000397906.2	chr22	28692201:28692316:28693567:28693840:28702483:28702631,	28693568	28693840	28693761	28693761	Frame_Shift_Del	C	-	p.G203fs
LIHC	TCGA-DD-A3A0-01	CHEK2	ENST00000425190.2,ENST00000439346.1,ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000402731.1,ENST00000491919.1,ENST00000464581.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000447421.1,ENST00000456369.1,ENST00000405598.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1,ENST00000433028.2	chr22	29095825:29095925:29099492:29099554:29105993:29106047,	29099493	29099554	29099532	29099532	Frame_Shift_Del	T	-	p.N69fs
LIHC	TCGA-DD-A3A0-01	KREMEN1	ENST00000327813.5,ENST00000400338.2	chr22	29469105:29469215:29490245:29490408:29494849:29494941,	29490246	29490408	29490379	29490379	Frame_Shift_Del	G	-	p.E77fs
LIHC	TCGA-DD-A3A0-01	KREMEN1	ENST00000407188.1,ENST00000400335.4,ENST00000327813.5,ENST00000400338.2	chr22	29494849:29494941:29517344:29517469:29521250:29521404,	29517345	29517469	29517407	29517407	Frame_Shift_Del	A	-	p.K139fs
LIHC	TCGA-DD-A3A0-01	KREMEN1	ENST00000407188.1,ENST00000400335.4,ENST00000327813.5,ENST00000400338.2	chr22	29517428:29517469:29521250:29521404:29533329:29533662,	29521251	29521404	29521398	29521398	Frame_Shift_Del	T	-	p.F209fs
LIHC	TCGA-DD-A3A0-01	RHBDD3	ENST00000216085.7,ENST00000414672.1	chr22	29656800:29656853:29659823:29660207:29661467:29661657,	29659824	29660207	29659962	29659962	Frame_Shift_Del	C	-	p.E132fs
LIHC	TCGA-DD-A3A0-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000360091.3,ENST00000332035.6,ENST00000483629.1,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29688147:29688158:29688476:29688595:29692228:29692358,	29688477	29688595	29688584	29688584	Frame_Shift_Del	G	-	p.G385fs
LIHC	TCGA-DD-A3A0-01	AP1B1	ENST00000415447.1,ENST00000317368.7,ENST00000356015.2,ENST00000432560.2,ENST00000405198.1,ENST00000357586.2,ENST00000402502.1	chr22	29727437:29727522:29727775:29727905:29730253:29730339,	29727776	29727905	29727880	29727880	Frame_Shift_Del	G	-	p.L779fs
LIHC	TCGA-DD-A3A0-01	NF2	ENST00000361452.4	chr22	29999987:30000101:30032739:30032865:30035078:30035201,29999987:30000101:30032739:30032865:30038190:30038274,	30032740	30032865	30032752	30032752	Frame_Shift_Del	G	-	p.G43fs
LIHC	TCGA-DD-A3A0-01	SF3A1	ENST00000439242.1,ENST00000215793.8	chr22	30733014:30733169:30733678:30733886:30734777:30735023,	30733679	30733886	30733828	30733828	Frame_Shift_Del	G	-	p.P536fs
LIHC	TCGA-DD-A3A0-01	CCDC157	ENST00000338306.3,ENST00000405659.1	chr22	30765420:30765592:30766314:30766939:30767638:30767716,	30766315	30766939	30766710	30766710	Frame_Shift_Del	G	-	p.V272fs
LIHC	TCGA-DD-A3A0-01	SEC14L2	ENST00000403484.1	chr22	30802330:30802374:30803403:30803592:30805175:30805271,	30803404	30803592	30803425	30803425	Frame_Shift_Del	G	-	p.G87fs
LIHC	TCGA-DD-A3A0-01	SEC14L2	ENST00000483116.1,ENST00000312932.9,ENST00000402592.3,ENST00000405717.3,ENST00000403484.1	chr22	30806584:30806668:30811747:30811854:30811936:30812076,	30811748	30811854	30811836	30811836	Frame_Shift_Del	C	-	p.N251fs
LIHC	TCGA-DD-A3A0-01	SEC14L4	ENST00000321205.5,ENST00000255858.7,ENST00000540456.1	chr22	30884899:30886233:30887559:30887729:30887820:30887960,	30887560	30887729	30887569	30887569	Frame_Shift_Del	C	-	p.A304fs
LIHC	TCGA-DD-A3A0-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888035:30888142:30888460:30888544:30890136:30890197,	30888461	30888544	30888528	30888528	Frame_Shift_Del	G	-	p.P145fs
LIHC	TCGA-DD-A3A0-01	SEC14L6	ENST00000437871.1,ENST00000402034.2	chr22	30921597:30921737:30921812:30921919:30925073:30925150,	30921813	30921919	30921855	30921855	Frame_Shift_Del	C	-	p.G243fs
LIHC	TCGA-DD-A3A0-01	PES1	ENST00000354694.7,ENST00000402281.1,ENST00000402284.3,ENST00000405677.1,ENST00000335214.6	chr22	30975737:30975922:30976039:30976165:30976557:30976673,	30976040	30976165	30976159	30976159	Frame_Shift_Del	A	-	p.F211fs
LIHC	TCGA-DD-A3A0-01	TCN2	ENST00000215838.3,ENST00000407817.3,ENST00000405742.3,ENST00000450638.1	chr22	31013316:31013482:31018954:31019070:31022446:31022992,	31018955	31019070	31019012	31019012	Frame_Shift_Del	G	-	p.A389fs
LIHC	TCGA-DD-A3A0-01	INPP5J	ENST00000331075.5	chr22	31520127:31520249:31520830:31521996:31522361:31522475,31518979:31519105:31520830:31521996:31522361:31522475,	31520831	31521996	31521176	31521176	Frame_Shift_Del	C	-	p.P152fs
LIHC	TCGA-DD-A3A0-01	LIMK2	ENST00000406516.1,ENST00000340552.4,ENST00000331728.4,ENST00000465937.1,ENST00000333611.4	chr22	31658119:31658225:31658580:31658777:31661931:31662118,	31658581	31658777	31658709	31658709	Frame_Shift_Del	C	-	p.H262fs
LIHC	TCGA-DD-A3A0-01	SFI1	ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000484806.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000382162.3	chr22	31974367:31974438:31976257:31976350:31979860:31979863,	31976258	31976350	31976267	31976267	Frame_Shift_Del	T	-	p.F307fs
LIHC	TCGA-DD-A3A0-01	PISD	ENST00000266095.5,ENST00000473770.1,ENST00000460723.1,ENST00000336566.4,ENST00000437808.1,ENST00000474017.1,ENST00000439502.2,ENST00000382151.2	chr22	32015429:32015822:32016538:32016699:32016981:32017128,	32016539	32016699	32016616	32016616	Frame_Shift_Del	C	-	p.D276fs
LIHC	TCGA-DD-A3A0-01	PRR14L	ENST00000412743.1	chr22	32121529:32121596:32134372:32134897:32145978:32146058,32121529:32121596:32134372:32134897:32146057:32146126,	32134373	32134897	32134389	32134389	Frame_Shift_Del	T	-	p.K153fs
LIHC	TCGA-DD-A3A0-01	PRR14L	ENST00000412743.1	chr22	32121529:32121596:32134372:32134897:32145978:32146058,32121529:32121596:32134372:32134897:32146057:32146126,	32134373	32134897	32134488	32134488	Frame_Shift_Del	T	-	p.K120fs
LIHC	TCGA-DD-A3A0-01	DEPDC5	ENST00000448753.1,ENST00000382105.2,ENST00000382111.2,ENST00000382112.3,ENST00000400246.1	chr22	32253430:32253539:32257353:32257419:32266575:32266730,	32257354	32257419	32257357	32257357	Frame_Shift_Del	G	-	p.G1090fs
LIHC	TCGA-DD-A3A0-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400248.2	chr22	32289567:32289737:32293467:32293639:32297727:32297788,	32293468	32293639	32293617	32293617	Frame_Shift_Del	G	-	p.E1451fs
LIHC	TCGA-DD-A3A0-01	SYN3	ENST00000332840.5,ENST00000358763.2	chr22	32929778:32929881:32934021:32934096:32937556:32937699,	32934022	32934096	32934078	32934078	Frame_Shift_Del	C	-	p.G312fs
LIHC	TCGA-DD-A3A0-01	MB	ENST00000419229.1	chr22	36007016:36007153:36013209:36013312:36019237:36019401,36007016:36007153:36013209:36013312:36018524:36018571,36007016:36007153:36013209:36013312:36018012:36018143,	36013210	36013312	36013257	36013257	Frame_Shift_Del	C	-	p.G16fs
LIHC	TCGA-DD-A3A0-01	MYH9	ENST00000216181.5	chr22	36702459:36702653:36705326:36705441:36708093:36708267,	36705327	36705441	36705349	36705349	Frame_Shift_Del	A	-	p.F607fs
LIHC	TCGA-DD-A3A0-01	EIF3D	ENST00000458572.1,ENST00000541106.1,ENST00000405442.1,ENST00000426531.1,ENST00000216190.8	chr22	36907747:36907833:36908506:36908649:36912524:36912654,	36908507	36908649	36908586	36908586	Frame_Shift_Del	C	-	p.E424fs
LIHC	TCGA-DD-A3A0-01	IFT27	ENST00000430701.1,ENST00000453009.2,ENST00000417951.2,ENST00000433985.2,ENST00000415653.1,ENST00000340630.5,ENST00000440696.2,ENST00000471809.1	chr22	37160039:37160080:37162181:37162241:37163349:37163409,	37162182	37162241	37162227	37162227	Frame_Shift_Del	A	-	p.F62fs
LIHC	TCGA-DD-A3A0-01	CARD10	ENST00000403299.1,ENST00000251973.5,ENST00000406271.3,ENST00000437756.1	chr22	37891523:37891593:37891766:37892010:37892455:37892567,	37891767	37892010	37891844	37891844	Frame_Shift_Del	C	-	p.R742fs
LIHC	TCGA-DD-A3A0-01	CARD10	ENST00000403299.1,ENST00000251973.5,ENST00000406271.3,ENST00000437756.1	chr22	37891523:37891593:37891766:37892010:37892455:37892567,	37891767	37892010	37891885	37891885	Frame_Shift_Del	G	-	p.Q729fs
LIHC	TCGA-DD-A3A0-01	GGA1	ENST00000381756.5,ENST00000406772.1,ENST00000337437.4,ENST00000343632.4,ENST00000325180.8	chr22	38026004:38026177:38026909:38027106:38028002:38028172,	38026910	38027106	38026927	38026927	Frame_Shift_Del	C	-	p.T377fs
LIHC	TCGA-DD-A3A0-01	SH3BP1	ENST00000469947.1	chr22	38037470:38037485:38038545:38038744:38038901:38039013,	38038546	38038744	38038620	38038620	Frame_Shift_Del	G	-	p.M30fs
LIHC	TCGA-DD-A3A0-01	SH3BP1	ENST00000357436.4,ENST00000451997.1,ENST00000599616.1,ENST00000442465.2,ENST00000336738.5,ENST00000417536.1	chr22	38037470:38037485:38038545:38038622:38038901:38039013,	38038546	38038622	38038620	38038620	Frame_Shift_Del	G	-	p.M30fs
LIHC	TCGA-DD-A3A0-01	EIF3L	ENST00000477256.1,ENST00000412331.2,ENST00000482600.1,ENST00000406934.1,ENST00000381683.6	chr22	38271847:38272018:38273680:38274178:38282771:38282852,	38273681	38274178	38274021	38274021	Frame_Shift_Del	C	-	p.A473fs
LIHC	TCGA-DD-A3A0-01	MICALL1	ENST00000454685.1	chr22	38321853:38322050:38323417:38323827:38327805:38327940,	38323418	38323827	38323697	38323697	Frame_Shift_Del	C	-	p.A582fs
LIHC	TCGA-DD-A3A0-01	MICALL1	ENST00000215957.6	chr22	38321853:38322050:38323417:38323833:38327805:38327940,	38323418	38323833	38323697	38323697	Frame_Shift_Del	C	-	p.A582fs
LIHC	TCGA-DD-A3A0-01	MICALL1	ENST00000215957.6,ENST00000424008.1,ENST00000402631.1	chr22	38329045:38329119:38333086:38333201:38333752:38333799,	38333087	38333201	38333111	38333111	Frame_Shift_Del	G	-	p.R778fs
LIHC	TCGA-DD-A3A0-01	MICALL1	ENST00000215957.6,ENST00000424008.1,ENST00000402631.1	chr22	38329045:38329119:38333086:38333201:38333752:38333799,	38333087	38333201	38333195	38333195	Frame_Shift_Del	G	-	p.R806fs
LIHC	TCGA-DD-A3A0-01	C22orf23	ENST00000249079.2,ENST00000403305.1,ENST00000403026.1,ENST00000422191.1,ENST00000418863.1	chr22	38341167:38341180:38343287:38343470:38347466:38347529,	38343288	38343470	38343453	38343453	Frame_Shift_Del	G	-	p.L62fs
LIHC	TCGA-DD-A3A0-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877262	38877262	Frame_Shift_Del	C	-	p.P133fs
LIHC	TCGA-DD-A3A0-01	FAM227A	ENST00000406767.2,ENST00000540952.1,ENST00000355830.6	chr22	38982069:38982204:38987365:38987545:38993208:38993360,	38987366	38987545	38987413	38987413	Frame_Shift_Del	A	-	p.F550fs
LIHC	TCGA-DD-A3A0-01	GTPBP1	ENST00000216044.5	chr22	39122010:39122155:39122262:39122445:39123217:39123353,	39122263	39122445	39122268	39122268	Frame_Shift_Del	G	-	p.V408fs
LIHC	TCGA-DD-A3A0-01	SUN2	ENST00000406622.1,ENST00000405018.1,ENST00000216064.4,ENST00000411587.2,ENST00000405510.1	chr22	39131957:39132385:39134177:39134270:39134591:39134759,	39134178	39134270	39134265	39134265	Frame_Shift_Del	A	-	p.F651fs
LIHC	TCGA-DD-A3A0-01	CBX6	ENST00000407418.3	chr22	39257454:39263206:39267484:39267551:39267696:39267762,	39267485	39267551	39267524	39267524	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-DD-A3A0-01	APOBEC3A	ENST00000249116.2,ENST00000402255.1	chr22	39353592:39353725:39355546:39355691:39357391:39357686,	39355547	39355691	39355672	39355672	Frame_Shift_Del	G	-	p.R52fs
LIHC	TCGA-DD-A3A0-01	APOBEC3G	ENST00000452957.2,ENST00000407997.3	chr22	39477475:39477590:39479735:39479889:39482283:39482460,	39479736	39479889	39479849	39479849	Frame_Shift_Del	G	-	p.W232fs
LIHC	TCGA-DD-A3A0-01	CBX7	ENST00000216133.5	chr22	39529588:39530053:39530405:39530757:39534640:39534707,	39530406	39530757	39530521	39530521	Frame_Shift_Del	G	-	p.P161fs
LIHC	TCGA-DD-A3A0-01	CBX7	ENST00000216133.5	chr22	39530405:39530478:39534640:39534707:39537375:39537441,39530573:39530757:39534640:39534707:39537375:39537441,	39534641	39534707	39534683	39534683	Frame_Shift_Del	C	-	p.G68fs
LIHC	TCGA-DD-A3A0-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662381	40662381	Frame_Shift_Del	A	-	p.E716fs
LIHC	TCGA-DD-A3A0-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662446	40662446	Frame_Shift_Del	C	-	p.P738fs
LIHC	TCGA-DD-A3A0-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662613	40662613	Frame_Shift_Del	A	-	p.S793fs
LIHC	TCGA-DD-A3A0-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662921	40662921	Frame_Shift_Del	G	-	p.W896fs
LIHC	TCGA-DD-A3A0-01	TNRC6B	ENST00000454349.2	chr22	40675998:40676147:40677122:40677293:40681648:40681774,	40677123	40677293	40677195	40677195	Frame_Shift_Del	C	-	p.P1162fs
LIHC	TCGA-DD-A3A0-01	SGSM3	ENST00000480830.1,ENST00000470518.1,ENST00000248929.9,ENST00000481408.1,ENST00000485962.1,ENST00000454798.2	chr22	40803429:40803572:40803792:40803847:40804074:40804124,	40803793	40803847	40803825	40803825	Frame_Shift_Del	G	-	p.V519fs
LIHC	TCGA-DD-A3A0-01	XPNPEP3	ENST00000357137.4,ENST00000544094.1,ENST00000428799.1	chr22	41282316:41282519:41303590:41303653:41305125:41305149,	41303591	41303653	41303622	41303622	Frame_Shift_Del	C	-	p.A275fs
LIHC	TCGA-DD-A3A0-01	XPNPEP3	ENST00000357137.4,ENST00000544094.1,ENST00000428799.1	chr22	41318336:41318517:41320365:41320486:41322272:41322467,	41320366	41320486	41320438	41320438	Frame_Shift_Del	C	-	p.P437fs
LIHC	TCGA-DD-A3A0-01	CHADL	ENST00000216241.9	chr22	41633179:41634889:41635446:41635624:41636877:41636938,	41635447	41635624	41635608	41635608	Frame_Shift_Del	G	-	p.H9fs
LIHC	TCGA-DD-A3A0-01	RANGAP1	ENST00000407260.4,ENST00000446258.1	chr22	41652714:41652828:41653951:41654110:41657449:41657584,41652714:41652828:41653951:41654110:41660667:41660847,	41653952	41654110	41653971	41653971	Frame_Shift_Del	C	-	p.G252fs
LIHC	TCGA-DD-A3A0-01	CSDC2	ENST00000306149.7	chr22	41968020:41968145:41969658:41969781:41970736:41972670,	41969659	41969781	41969680	41969680	Frame_Shift_Del	C	-	p.G66fs
LIHC	TCGA-DD-A3A0-01	CSDC2	ENST00000306149.7	chr22	41968020:41968145:41969658:41969781:41970736:41972670,	41969659	41969781	41969739	41969739	Frame_Shift_Del	C	-	p.T86fs
LIHC	TCGA-DD-A3A0-01	PMM1	ENST00000485648.1,ENST00000216259.7,ENST00000482178.1,ENST00000472620.1	chr22	41973811:41973927:41974809:41974885:41979962:41980062,	41974810	41974885	41974846	41974846	Frame_Shift_Del	T	-	p.T172fs
LIHC	TCGA-DD-A3A0-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42049532:42049694:42052906:42053036:42054255:42054356,	42052907	42053036	42052954	42052954	Frame_Shift_Del	C	-	p.P447fs
LIHC	TCGA-DD-A3A0-01	MEI1	ENST00000401548.3,ENST00000484966.1,ENST00000476893.1,ENST00000487535.1,ENST00000400107.1	chr22	42190374:42190481:42191414:42191546:42191738:42191777,	42191415	42191546	42191483	42191483	Frame_Shift_Del	T	-	p.A1201fs
LIHC	TCGA-DD-A3A0-01	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42262872	42262872	Frame_Shift_Del	C	-	p.F42fs
LIHC	TCGA-DD-A3A0-01	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42262882	42262882	Frame_Shift_Del	T	-	p.F46fs
LIHC	TCGA-DD-A3A0-01	SEPT3	ENST00000406029.1,ENST00000291236.11	chr22	42377648:42377840:42381987:42382116:42383209:42383291,42373053:42373078:42381987:42382116:42383209:42383291,	42381988	42382116	42382018	42382018	Frame_Shift_Del	T	-	p.V78fs
LIHC	TCGA-DD-A3A0-01	RRP7A	ENST00000416699.1,ENST00000323013.6	chr22	42910687:42910785:42911156:42911274:42912016:42912142,	42911157	42911274	42911232	42911232	Frame_Shift_Del	C	-	p.V129fs
LIHC	TCGA-DD-A3A0-01	TTLL1	ENST00000331018.7,ENST00000266254.7	chr22	43464415:43464596:43465641:43465850:43471479:43471596,	43465642	43465850	43465717	43465717	Frame_Shift_Del	T	-	p.R83fs
LIHC	TCGA-DD-A3A0-01	MCAT	ENST00000290429.6	chr22	43528885:43529492:43533086:43533304:43537167:43537255,	43533087	43533304	43533255	43533255	Frame_Shift_Del	T	-	p.E187fs
LIHC	TCGA-DD-A3A0-01	MCAT	ENST00000290429.6	chr22	43528885:43529492:43533086:43533304:43537167:43537255,	43533087	43533304	43533287	43533287	Frame_Shift_Del	T	-	p.I177fs
LIHC	TCGA-DD-A3A0-01	MPPED1	ENST00000443721.1,ENST00000334209.5	chr22	43808019:43808164:43820913:43821215:43830953:43831087,	43820914	43821215	43821150	43821150	Frame_Shift_Del	C	-	p.N53fs
LIHC	TCGA-DD-A3A0-01	EFCAB6	ENST00000262726.7,ENST00000468552.1,ENST00000396231.2	chr22	44062983:44063152:44064751:44064925:44067852:44068013,	44064752	44064925	44064784	44064784	Frame_Shift_Del	T	-	p.K594fs
LIHC	TCGA-DD-A3A0-01	EFCAB6	ENST00000404038.1,ENST00000262726.7,ENST00000396231.2	chr22	44079626:44079735:44083350:44083461:44107354:44107503,	44083351	44083461	44083392	44083392	Frame_Shift_Del	C	-	p.G367fs
LIHC	TCGA-DD-A3A0-01	EFCAB6	ENST00000404038.1,ENST00000262726.7	chr22	44161184:44161273:44168771:44168983:44178059:44178205,	44168772	44168983	44168932	44168932	Frame_Shift_Del	A	-	p.L64fs
LIHC	TCGA-DD-A3A0-01	SULT4A1	ENST00000249130.5,ENST00000422525.1	chr22	44235824:44235905:44237681:44237812:44258093:44258286,	44237682	44237812	44237770	44237770	Frame_Shift_Del	C	-	p.G71fs
LIHC	TCGA-DD-A3A0-01	KIAA0930	ENST00000251993.7,ENST00000488038.1,ENST00000443310.3,ENST00000423262.1,ENST00000391627.2,ENST00000336156.5	chr22	45595753:45595916:45598870:45599065:45599725:45599866,	45598871	45599065	45598978	45598978	Frame_Shift_Del	G	-	p.Q249fs
LIHC	TCGA-DD-A3A0-01	KIAA0930	ENST00000251993.7,ENST00000488038.1,ENST00000443310.3,ENST00000423262.1,ENST00000391627.2,ENST00000336156.5	chr22	45595753:45595916:45598870:45599065:45599725:45599866,	45598871	45599065	45599002	45599002	Frame_Shift_Del	C	-	p.E241fs
LIHC	TCGA-DD-A3A0-01	UPK3A	ENST00000216211.4	chr22	45681821:45681977:45683052:45683332:45684941:45685024,	45683053	45683332	45683168	45683168	Frame_Shift_Del	C	-	p.I108fs
LIHC	TCGA-DD-A3A0-01	FAM118A	ENST00000441876.2,ENST00000216214.3	chr22	45723722:45723944:45726483:45726612:45728305:45728536,	45726484	45726612	45726502	45726502	Frame_Shift_Del	G	-	p.G181fs
LIHC	TCGA-DD-A3A0-01	SMC1B	ENST00000357450.4	chr22	45745608:45745678:45748330:45748482:45749857:45750012,	45748331	45748482	45748443	45748443	Frame_Shift_Del	C	-	p.E1105fs
LIHC	TCGA-DD-A3A0-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45792225:45792366:45794974:45795233:45798212:45798451,	45794975	45795233	45795216	45795216	Frame_Shift_Del	A	-	p.L291fs
LIHC	TCGA-DD-A3A0-01	TRMU	ENST00000381021.3,ENST00000485559.1,ENST00000441818.1,ENST00000457572.1,ENST00000453630.1,ENST00000290846.4	chr22	46751340:46751485:46751886:46751969:46752738:46753081,	46751887	46751969	46751889	46751889	Frame_Shift_Del	C	-	p.P341fs
LIHC	TCGA-DD-A3A0-01	TBC1D22A	ENST00000380995.1,ENST00000441162.1,ENST00000406733.1,ENST00000337137.4	chr22	47189397:47189738:47193340:47193517:47274548:47274619,	47193341	47193517	47193501	47193501	Frame_Shift_Del	C	-	p.G207fs
LIHC	TCGA-DD-A3A0-01	FAM19A5	ENST00000358295.5,ENST00000402357.1	chr22	49042408:49042558:49103528:49103656:49145650:49146220,	49103529	49103656	49103533	49103533	Frame_Shift_Del	A	-	p.R82fs
LIHC	TCGA-DD-A3A0-01	FAM19A5	ENST00000358295.5,ENST00000402357.1	chr22	49042408:49042558:49103528:49103656:49145650:49146220,	49103529	49103656	49103578	49103578	Frame_Shift_Del	G	-	p.E97fs
LIHC	TCGA-DD-A3A0-01	CRELD2	ENST00000404488.3,ENST00000483652.1,ENST00000328268.4	chr22	50316259:50316355:50318007:50318103:50319064:50319205,50316881:50316965:50318007:50318103:50319064:50319205,	50318008	50318103	50318073	50318073	Frame_Shift_Del	G	-	p.G329fs
LIHC	TCGA-DD-A3A0-01	MOV10L1	ENST00000395854.2,ENST00000395858.3,ENST00000262794.5,ENST00000545383.1,ENST00000540615.1,ENST00000475190.1,ENST00000395843.1,ENST00000419054.1	chr22	50530429:50530614:50537871:50538031:50546564:50546613,	50537872	50538031	50537937	50537937	Frame_Shift_Del	C	-	p.G116fs
LIHC	TCGA-DD-A3A0-01	TRABD	ENST00000395829.1,ENST00000395827.1,ENST00000463233.1,ENST00000380909.4,ENST00000303434.4	chr22	50633328:50633469:50635669:50635780:50635877:50636017,	50635670	50635780	50635746	50635746	Frame_Shift_Del	C	-	p.A166fs
LIHC	TCGA-DD-A3A0-01	TUBGCP6	ENST00000498611.1	chr22	50658385:50658444:50659703:50660303:50660456:50660531,	50659704	50660303	50660129	50660129	Frame_Shift_Del	C	-	p.A887fs
LIHC	TCGA-DD-A3A0-01	TUBGCP6	ENST00000439308.2	chr22	50658385:50658444:50658620:50660303:50660456:50660531,	50658621	50660303	50660129	50660129	Frame_Shift_Del	C	-	p.A887fs
LIHC	TCGA-DD-A3A0-01	TUBGCP6	ENST00000248846.5	chr22	50658385:50658444:50658679:50660303:50660456:50660531,	50658680	50660303	50660129	50660129	Frame_Shift_Del	C	-	p.A887fs
LIHC	TCGA-DD-A3A0-01	TUBGCP6	ENST00000248846.5,ENST00000498611.1,ENST00000439308.2	chr22	50667832:50668006:50671744:50671955:50678632:50678796,	50671745	50671955	50671756	50671756	Frame_Shift_Del	A	-	p.S369fs
LIHC	TCGA-DD-A3A0-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50722595:50722642:50723001:50723094:50724228:50724272,	50723002	50723094	50723075	50723075	Frame_Shift_Del	C	-	p.G703fs
LIHC	TCGA-DD-A3A0-01	PLXNB2	ENST00000359337.4,ENST00000496720.1,ENST00000449103.1	chr22	50723001:50723094:50724228:50724330:50724418:50724527,	50724229	50724330	50724294	50724294	Frame_Shift_Del	G	-	p.L675fs
LIHC	TCGA-DD-A3A0-01	DENND6B	ENST00000413817.3,ENST00000495607.1	chr22	50754798:50754904:50755721:50755802:50756336:50756449,	50755722	50755802	50755735	50755735	Frame_Shift_Del	C	-	p.G147fs
LIHC	TCGA-DD-A3A0-01	PPP6R2	ENST00000395741.3	chr22	50854520:50854586:50857295:50857408:50857777:50857891,50854520:50854586:50857295:50857408:50857774:50857891,	50857296	50857408	50857380	50857380	Frame_Shift_Del	C	-	p.P235fs
LIHC	TCGA-DD-A3A0-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000401672.3,ENST00000427222.2,ENST00000216061.5	chr22	50879250:50879455:50882294:50882546:50882627:50882800,	50882295	50882546	50882466	50882466	Frame_Shift_Del	G	-	p.V891fs
LIHC	TCGA-DD-A3A0-01	SBF1	ENST00000380817.3	chr22	50895017:50895102:50897683:50897821:50897898:50898095,50895462:50895540:50897683:50897821:50897898:50898095,	50897684	50897821	50897692	50897692	Frame_Shift_Del	C	-	p.G1273fs
LIHC	TCGA-DD-A3A0-01	MIOX	ENST00000395732.3	chr22	50927825:50927875:50927960:50928059:50928176:50928405,	50927961	50928059	50927975	50927975	Frame_Shift_Del	C	-	p.I217fs
LIHC	TCGA-DD-A3A0-01	MIOX	ENST00000451761.1,ENST00000216075.6	chr22	50927825:50927875:50927960:50928073:50928176:50928405,	50927961	50928073	50927975	50927975	Frame_Shift_Del	C	-	p.I217fs
LIHC	TCGA-DD-A3A0-01	LMF2	ENST00000505981.1,ENST00000380796.3,ENST00000474879.2,ENST00000216080.5	chr22	50944124:50944244:50944463:50944642:50944713:50944931,	50944464	50944642	50944500	50944500	Frame_Shift_Del	G	-	p.P221fs
LIHC	TCGA-DD-A3A0-01	NCAPH2	ENST00000395701.3,ENST00000395698.3,ENST00000523045.1,ENST00000299821.11,ENST00000420993.2	chr22	50956401:50956481:50956561:50956707:50957077:50957161,	50956562	50956707	50956622	50956622	Frame_Shift_Del	C	-	p.H187fs
LIHC	TCGA-DD-A3A0-01	NCAPH2	ENST00000395701.3,ENST00000395698.3,ENST00000523045.1,ENST00000299821.11,ENST00000420993.2	chr22	50956401:50956481:50956561:50956707:50957077:50957161,	50956562	50956707	50956684	50956684	Frame_Shift_Del	C	-	p.S208fs
LIHC	TCGA-DD-A3A0-01	ARSA	ENST00000216124.5,ENST00000395619.3,ENST00000547307.1,ENST00000453344.2,ENST00000395621.3,ENST00000356098.5,ENST00000547805.1	chr22	51063790:51063892:51064006:51064109:51064363:51064491,	51064007	51064109	51064081	51064081	Frame_Shift_Del	G	-	p.P377fs
LIHC	TCGA-DD-A3A0-01	SLC25A6	ENST00000381401.5	chrX	1505044:1505652:1506171:1506312:1508133:1508620,	1506172	1506312	1506221	1506221	Frame_Shift_Del	G	-	p.P230fs
LIHC	TCGA-DD-A3A0-01	XG	ENST00000426774.1	chrX	2700106:2700169:2707684:2707750:2712575:2712644,	2707685	2707750	2707692	2707692	Frame_Shift_Del	C	-	p.Y66fs
LIHC	TCGA-DD-A3A0-01	XG	ENST00000509484.2,ENST00000419513.2,ENST00000381174.5	chrX	2700106:2700169:2707684:2707747:2712575:2712644,	2707685	2707747	2707692	2707692	Frame_Shift_Del	C	-	p.Y66fs
LIHC	TCGA-DD-A3A0-01	XG	ENST00000426774.1,ENST00000419513.2,ENST00000381174.5	chrX	2726225:2726261:2729376:2729493:2732404:2732589,	2729377	2729493	2729390	2729390	Frame_Shift_Del	A	-	p.A142fs
LIHC	TCGA-DD-A3A0-01	ARSD	ENST00000381154.1	chrX	2827857:2828020:2828699:2828834:2833596:2833733,	2828700	2828834	2828720	2828720	Frame_Shift_Del	C	-	p.G372fs
LIHC	TCGA-DD-A3A0-01	PRKX	ENST00000262848.5,ENST00000425240.1	chrX	3539299:3539357:3544459:3544555:3559892:3560012,	3544460	3544555	3544540	3544540	Frame_Shift_Del	A	-	p.F245fs
LIHC	TCGA-DD-A3A0-01	PNPLA4	ENST00000442940.1,ENST00000381042.4,ENST00000444736.1	chrX	7889753:7889889:7890044:7890139:7893980:7894173,	7890045	7890139	7890082	7890082	Frame_Shift_Del	C	-	p.A80fs
LIHC	TCGA-DD-A3A0-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7894037	7894037	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-DD-A3A0-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7894100	7894100	Frame_Shift_Del	C	-	p.A22fs
LIHC	TCGA-DD-A3A0-01	TBL1X	ENST00000380961.1,ENST00000415293.1,ENST00000424279.1,ENST00000422314.1	chrX	9608312:9608400:9622254:9622362:9652082:9652110,	9622255	9622362	9622264	9622264	Frame_Shift_Del	C	-	p.S38fs
LIHC	TCGA-DD-A3A0-01	TBL1X	ENST00000380961.1,ENST00000407597.2,ENST00000536365.1,ENST00000424279.1,ENST00000217964.7	chrX	9665408:9665469:9673032:9673154:9677287:9677362,	9673033	9673154	9673071	9673071	Frame_Shift_Del	T	-	p.F385fs
LIHC	TCGA-DD-A3A0-01	GPR143	ENST00000447366.1,ENST00000380929.2,ENST00000467482.1,ENST00000431126.1	chrX	9716613:9716706:9727371:9727466:9728756:9728866,	9727372	9727466	9727421	9727421	Frame_Shift_Del	A	-	p.C136fs
LIHC	TCGA-DD-A3A0-01	CLCN4	ENST00000380829.1,ENST00000380833.4,ENST00000421085.2	chrX	10162950:10163138:10165978:10166101:10174397:10174604,	10165979	10166101	10166039	10166039	Frame_Shift_Del	T	-	p.F165fs
LIHC	TCGA-DD-A3A0-01	MSL3	ENST00000380692.2	chrX	11777746:11777831:11777911:11777994:11778521:11778617,	11777912	11777994	11777940	11777940	Frame_Shift_Del	A	-	p.E44fs
LIHC	TCGA-DD-A3A0-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000380550.3,ENST00000340096.6	chrX	13780462:13780563:13785245:13785403:13786172:13786343,13781869:13781974:13785245:13785403:13786172:13786343,	13785246	13785403	13785294	13785294	Frame_Shift_Del	G	-	p.R743fs
LIHC	TCGA-DD-A3A0-01	GPM6B	ENST00000493085.1,ENST00000454189.2,ENST00000356942.5,ENST00000398361.3,ENST00000316715.4,ENST00000468080.1,ENST00000493677.1,ENST00000355135.2	chrX	13798026:13798108:13801483:13801640:13803740:13803927,	13801484	13801640	13801516	13801516	Frame_Shift_Del	T	-	p.T107fs
LIHC	TCGA-DD-A3A0-01	MOSPD2	ENST00000482354.1,ENST00000380492.3,ENST00000495110.1	chrX	14932624:14932721:14933789:14933886:14934318:14934448,	14933790	14933886	14933809	14933809	Frame_Shift_Del	A	-	p.E370fs
LIHC	TCGA-DD-A3A0-01	MOSPD2	ENST00000482354.1,ENST00000380492.3,ENST00000495110.1	chrX	14932624:14932721:14933789:14933886:14934318:14934448,	14933790	14933886	14933883	14933883	Frame_Shift_Del	G	-	p.G396fs
LIHC	TCGA-DD-A3A0-01	PIGA	ENST00000333590.4,ENST00000542278.1,ENST00000428964.1	chrX	15342786:15342993:15343141:15343274:15344035:15344168,	15343142	15343274	15343254	15343254	Frame_Shift_Del	A	-	p.L290fs
LIHC	TCGA-DD-A3A0-01	ZRSR2	ENST00000307771.7	chrX	15833799:15834013:15836709:15836765:15838329:15838439,	15836710	15836765	15836738	15836738	Frame_Shift_Del	G	-	p.R267fs
LIHC	TCGA-DD-A3A0-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745687	17745687	Frame_Shift_Del	A	-	p.Q1133fs
LIHC	TCGA-DD-A3A0-01	PHKA2	ENST00000379942.4	chrX	18959646:18959793:18961827:18961926:18963195:18963276,	18961828	18961926	18961891	18961891	Frame_Shift_Del	A	-	p.F218fs
LIHC	TCGA-DD-A3A0-01	PHKA2	ENST00000379942.4	chrX	18969221:18969390:18970611:18970659:18972371:18972530,	18970612	18970659	18970637	18970637	Frame_Shift_Del	C	-	p.G87fs
LIHC	TCGA-DD-A3A0-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560172	19560172	Frame_Shift_Del	G	-	p.P588fs
LIHC	TCGA-DD-A3A0-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560202	19560202	Frame_Shift_Del	A	-	p.L578fs
LIHC	TCGA-DD-A3A0-01	RPS6KA3	ENST00000379548.4,ENST00000540702.1,ENST00000544447.1,ENST00000379565.3	chrX	20194551:20194616:20195113:20195202:20204413:20204484,	20195114	20195202	20195166	20195166	Frame_Shift_Del	T	-	p.E294fs
LIHC	TCGA-DD-A3A0-01	ACOT9	ENST00000473710.1,ENST00000336430.7,ENST00000494361.1,ENST00000379303.5,ENST00000449612.2,ENST00000379295.1	chrX	23725993:23726061:23731251:23731325:23739997:23740101,	23731252	23731325	23731297	23731297	Frame_Shift_Del	A	-	p.L206fs
LIHC	TCGA-DD-A3A0-01	APOO	ENST00000490078.1	chrX	23876758:23876850:23886709:23886805:23892519:23892574,23876758:23876850:23886709:23886805:23897031:23897151,	23886710	23886805	23886765	23886765	Frame_Shift_Del	A	-	p.F111fs
LIHC	TCGA-DD-A3A0-01	EIF2S3	ENST00000253039.4	chrX	24084114:24084209:24086080:24086225:24089674:24089844,	24086081	24086225	24086175	24086175	Frame_Shift_Del	T	-	p.L321fs
LIHC	TCGA-DD-A3A0-01	EIF2S3	ENST00000253039.4	chrX	24086080:24086225:24089674:24089844:24091207:24091298,	24089675	24089844	24089724	24089724	Frame_Shift_Del	G	-	p.V354fs
LIHC	TCGA-DD-A3A0-01	ZFX	ENST00000379177.1,ENST00000539115.1,ENST00000338565.3,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24226334:24226487:24227016:24227157:24228309:24229716,	24227017	24227157	24227110	24227110	Frame_Shift_Del	A	-	p.Q396fs
LIHC	TCGA-DD-A3A0-01	PDK3	ENST00000441463.2	chrX	24483572:24483678:24512858:24513000:24516945:24517017,	24512859	24513000	24512960	24512960	Frame_Shift_Del	A	-	p.N70fs
LIHC	TCGA-DD-A3A0-01	POLA1	ENST00000379059.3,ENST00000379068.3	chrX	24755741:24755858:24757491:24757667:24759491:24759621,	24757492	24757667	24757563	24757563	Frame_Shift_Del	G	-	p.K704fs
LIHC	TCGA-DD-A3A0-01	POLA1	ENST00000379059.3,ENST00000379068.3	chrX	24759491:24759621:24760118:24760238:24761346:24761446,	24760119	24760238	24760176	24760176	Frame_Shift_Del	T	-	p.F802fs
LIHC	TCGA-DD-A3A0-01	POLA1	ENST00000379059.3,ENST00000379068.3	chrX	24759491:24759621:24760118:24760238:24761346:24761446,	24760119	24760238	24760224	24760224	Frame_Shift_Del	C	-	p.P818fs
LIHC	TCGA-DD-A3A0-01	TAB3	ENST00000378928.1	chrX	30861104:30861166:30864049:30864188:30864667:30864761,	30864050	30864188	30864116	30864116	Frame_Shift_Del	A	-	p.F77fs
LIHC	TCGA-DD-A3A0-01	DMD	ENST00000361471.4,ENST00000359836.1,ENST00000474231.1,ENST00000378723.3,ENST00000358062.2,ENST00000378702.4,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31165391:31165635:31187559:31187718:31190464:31190530,	31187560	31187718	31187660	31187660	Frame_Shift_Del	G	-	p.L3485fs
LIHC	TCGA-DD-A3A0-01	RPGR	ENST00000474584.1,ENST00000342811.3,ENST00000318842.7,ENST00000339363.3,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38160499:38160624:38163887:38164043:38169867:38170023,	38163888	38164043	38163979	38163979	Frame_Shift_Del	A	-	p.F281fs
LIHC	TCGA-DD-A3A0-01	RPGR	ENST00000474584.1,ENST00000342811.3,ENST00000339363.3,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38182105:38182198:38182651:38182777:38186592:38186675,	38182652	38182777	38182748	38182748	Frame_Shift_Del	T	-	p.S20fs
LIHC	TCGA-DD-A3A0-01	BCOR	ENST00000397354.3,ENST00000442018.1,ENST00000413905.1,ENST00000342274.4,ENST00000378444.4,ENST00000378455.4,ENST00000427012.1,ENST00000378463.1	chrX	39916407:39916574:39921391:39921646:39921998:39922190,	39921392	39921646	39921566	39921566	Frame_Shift_Del	G	-	p.P1384fs
LIHC	TCGA-DD-A3A0-01	ATP6AP2	ENST00000535539.1,ENST00000436783.1,ENST00000486558.1	chrX	40456500:40456596:40456778:40456916:40457932:40457986,40450485:40450617:40456778:40456916:40457932:40457986,	40456779	40456916	40456853	40456853	Frame_Shift_Del	C	-	p.R157fs
LIHC	TCGA-DD-A3A0-01	CXorf38	ENST00000440784.2,ENST00000378426.1,ENST00000327877.5,ENST00000378421.1	chrX	40489865:40490025:40495784:40495964:40496258:40496408,	40495785	40495964	40495867	40495867	Frame_Shift_Del	T	-	p.N121fs
LIHC	TCGA-DD-A3A0-01	MED14	ENST00000324817.1	chrX	40523558:40523741:40525971:40526103:40531112:40531224,	40525972	40526103	40525993	40525993	Frame_Shift_Del	C	-	p.A1082fs
LIHC	TCGA-DD-A3A0-01	MED14	ENST00000324817.1	chrX	40560416:40560495:40562695:40562821:40568599:40568711,	40562696	40562821	40562742	40562742	Frame_Shift_Del	A	-	p.F455fs
LIHC	TCGA-DD-A3A0-01	MED14	ENST00000324817.1	chrX	40560416:40560495:40562695:40562821:40568599:40568711,	40562696	40562821	40562784	40562784	Frame_Shift_Del	G	-	p.P441fs
LIHC	TCGA-DD-A3A0-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41048561:41048728:41055503:41055612:41055844:41055991,	41055504	41055612	41055535	41055535	Frame_Shift_Del	T	-	p.F1337fs
LIHC	TCGA-DD-A3A0-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41064555:41064746:41069761:41069935:41073820:41073962,	41069762	41069935	41069804	41069804	Frame_Shift_Del	T	-	p.A1686fs
LIHC	TCGA-DD-A3A0-01	CASK	ENST00000378158.1,ENST00000378168.2,ENST00000361962.4	chrX	41414852:41414888:41416284:41416353:41419031:41419100,41412971:41413168:41416284:41416353:41419031:41419100,	41416285	41416353	41416322	41416322	Frame_Shift_Del	G	-	p.P590fs
LIHC	TCGA-DD-A3A0-01	MAOA	ENST00000542639.1,ENST00000338702.3	chrX	43591945:43592042:43595473:43595527:43599927:43599985,	43595474	43595527	43595490	43595490	Frame_Shift_Del	A	-	p.K357fs
LIHC	TCGA-DD-A3A0-01	NDUFB11	ENST00000276062.8	chrX	47001618:47001839:47001982:47002143:47003871:47004437,	47001983	47002143	47002106	47002106	Frame_Shift_Del	A	-	p.L82fs
LIHC	TCGA-DD-A3A0-01	RBM10	ENST00000345781.6,ENST00000329236.7	chrX	47004677:47004884:47006755:47006897:47028713:47028897,	47006756	47006897	47006891	47006891	Frame_Shift_Del	A	-	p.E4fs
LIHC	TCGA-DD-A3A0-01	CDK16	ENST00000517426.1,ENST00000523344.1,ENST00000518022.1,ENST00000357227.4,ENST00000457458.2,ENST00000276052.6	chrX	47085363:47085426:47085677:47085801:47085981:47086102,	47085678	47085801	47085786	47085786	Frame_Shift_Del	A	-	p.K307fs
LIHC	TCGA-DD-A3A0-01	USP11	ENST00000480104.1,ENST00000218348.3,ENST00000469080.1,ENST00000377107.2	chrX	47102024:47102119:47102794:47103001:47103896:47103924,	47102795	47103001	47102917	47102917	Frame_Shift_Del	T	-	p.L569fs
LIHC	TCGA-DD-A3A0-01	ARAF	ENST00000470206.1,ENST00000377045.4	chrX	47429384:47429423:47430276:47430411:47430721:47430805,	47430277	47430411	47430339	47430339	Frame_Shift_Del	C	-	p.C538fs
LIHC	TCGA-DD-A3A0-01	ELK1	ENST00000376983.3,ENST00000247161.3,ENST00000592066.1	chrX	47496411:47496513:47497149:47497581:47498293:47498737,	47497150	47497581	47497406	47497406	Frame_Shift_Del	G	-	p.P278fs
LIHC	TCGA-DD-A3A0-01	SSX5	ENST00000403001.3,ENST00000376923.1,ENST00000311798.1,ENST00000347757.1	chrX	48047062:48047167:48049568:48049704:48051667:48051717,	48049569	48049704	48049661	48049661	Frame_Shift_Del	C	-	p.G166fs
LIHC	TCGA-DD-A3A0-01	FTSJ1	ENST00000485486.1,ENST00000019019.2,ENST00000348411.2,ENST00000456787.1	chrX	48336836:48336906:48337004:48337095:48337425:48337458,	48337005	48337095	48337080	48337080	Frame_Shift_Del	G	-	p.Q89fs
LIHC	TCGA-DD-A3A0-01	WAS	ENST00000376701.4	chrX	48546688:48546842:48547048:48547455:48547708:48547823,	48547049	48547455	48547144	48547144	Frame_Shift_Del	C	-	p.P344fs
LIHC	TCGA-DD-A3A0-01	WAS	ENST00000376701.4	chrX	48547408:48547455:48547708:48547823:48549497:48549818,	48547709	48547823	48547771	48547771	Frame_Shift_Del	G	-	p.V467fs
LIHC	TCGA-DD-A3A0-01	FOXP3	ENST00000376199.2,ENST00000557224.1,ENST00000376197.1,ENST00000518685.1	chrX	49113381:49113469:49113883:49114022:49114752:49114901,	49113884	49114022	49113920	49113920	Frame_Shift_Del	C	-	p.V140fs
LIHC	TCGA-DD-A3A0-01	MAGED1	ENST00000375695.2	chrX	51637371:51637445:51637722:51637890:51638148:51638340,	51637723	51637890	51637812	51637812	Frame_Shift_Del	C	-	p.D45fs
LIHC	TCGA-DD-A3A0-01	RIBC1	ENST00000375327.3,ENST00000457095.1,ENST00000329209.5,ENST00000414955.2	chrX	53450262:53450351:53453224:53453341:53454950:53455032,	53453225	53453341	53453292	53453292	Frame_Shift_Del	A	-	p.E23fs
LIHC	TCGA-DD-A3A0-01	HUWE1	ENST00000427052.1,ENST00000218328.8,ENST00000342160.3,ENST00000262854.6	chrX	53620323:53620561:53621458:53621581:53622146:53622363,	53621459	53621581	53621533	53621533	Frame_Shift_Del	A	-	p.F1143fs
LIHC	TCGA-DD-A3A0-01	HUWE1	ENST00000218328.8,ENST00000342160.3,ENST00000262854.6	chrX	53672262:53672415:53674310:53674517:53675154:53675253,	53674311	53674517	53674391	53674391	Frame_Shift_Del	T	-	p.M91fs
LIHC	TCGA-DD-A3A0-01	ITIH6	ENST00000218436.6	chrX	54786188:54786360:54800513:54800630:54814912:54815041,	54800514	54800630	54800588	54800588	Frame_Shift_Del	G	-	p.L277fs
LIHC	TCGA-DD-A3A0-01	FAAH2	ENST00000374900.4	chrX	57405083:57405219:57407344:57407462:57458350:57458470,	57407345	57407462	57407415	57407415	Frame_Shift_Del	T	-	p.F317fs
LIHC	TCGA-DD-A3A0-01	EDA2R	ENST00000451436.2	chrX	65817619:65817935:65819315:65819702:65822474:65822639,65817619:65817935:65819315:65819702:65822565:65822639,	65819316	65819702	65819341	65819341	Frame_Shift_Del	T	-	p.E293fs
LIHC	TCGA-DD-A3A0-01	AR	ENST00000396043.2,ENST00000374690.3	chrX	66941674:66941805:66942668:66942826:66943527:66943778,	66942669	66942826	66942693	66942693	Frame_Shift_Del	A	-	p.Q825fs
LIHC	TCGA-DD-A3A0-01	AR	ENST00000396043.2,ENST00000374690.3	chrX	66941674:66941805:66942668:66942826:66943527:66943778,	66942669	66942826	66942760	66942760	Frame_Shift_Del	A	-	p.R847fs
LIHC	TCGA-DD-A3A0-01	KIF4A	ENST00000374388.3,ENST00000374403.3	chrX	69561648:69561781:69563552:69563611:69563726:69563832,	69563553	69563611	69563569	69563569	Frame_Shift_Del	A	-	p.E428fs
LIHC	TCGA-DD-A3A0-01	TEX11	ENST00000374333.2,ENST00000395889.2,ENST00000374320.2,ENST00000344304.3	chrX	69811600:69811673:69825250:69825367:69826808:69826879,	69825251	69825367	69825355	69825355	Frame_Shift_Del	A	-	p.C670fs
LIHC	TCGA-DD-A3A0-01	MED12	ENST00000333646.6,ENST00000374102.1,ENST00000374080.3	chrX	70352226:70352388:70352694:70352806:70352972:70353062,	70352695	70352806	70352794	70352794	Frame_Shift_Del	C	-	p.S1505fs
LIHC	TCGA-DD-A3A0-01	NLGN3	ENST00000358741.3	chrX	70367912:70368056:70368695:70368755:70373326:70373386,	70368696	70368755	70368720	70368720	Frame_Shift_Del	C	-	p.A161fs
LIHC	TCGA-DD-A3A0-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387536	70387536	Frame_Shift_Del	T	-	p.V510fs
LIHC	TCGA-DD-A3A0-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470452	70470452	Frame_Shift_Del	C	-	p.G301fs
LIHC	TCGA-DD-A3A0-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470457	70470457	Frame_Shift_Del	C	-	p.A300fs
LIHC	TCGA-DD-A3A0-01	SLC16A2	ENST00000590447.1,ENST00000587091.1,ENST00000276033.5	chrX	73740954:73740969:73744193:73744644:73745584:73745728,	73744194	73744644	73744340	73744340	Frame_Shift_Del	T	-	p.I315fs
LIHC	TCGA-DD-A3A0-01	ZDHHC15	ENST00000373367.3,ENST00000541184.1	chrX	74641698:74641825:74644486:74644619:74648912:74649033,	74644487	74644619	74644551	74644551	Frame_Shift_Del	A	-	p.F215fs
LIHC	TCGA-DD-A3A0-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938401	76938401	Frame_Shift_Del	T	-	p.S784fs
LIHC	TCGA-DD-A3A0-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938413	76938413	Frame_Shift_Del	T	-	p.R779fs
LIHC	TCGA-DD-A3A0-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939827	76939827	Frame_Shift_Del	T	-	p.K307fs
LIHC	TCGA-DD-A3A0-01	MAGT1	ENST00000358075.6	chrX	77110997:77111087:77112229:77112370:77112853:77112994,	77112230	77112370	77112239	77112239	Frame_Shift_Del	A	-	p.F253fs
LIHC	TCGA-DD-A3A0-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77264598:77264760:77266672:77266749:77266945:77267171,	77266673	77266749	77266681	77266681	Frame_Shift_Del	T	-	p.G626fs
LIHC	TCGA-DD-A3A0-01	BRWD3	ENST00000478415.1,ENST00000373275.4	chrX	80047352:80047451:80049120:80049271:80064037:80064097,	80049121	80049271	80049125	80049125	Frame_Shift_Del	G	-	p.A109fs
LIHC	TCGA-DD-A3A0-01	ZNF711	ENST00000395402.1,ENST00000276123.3,ENST00000373165.3,ENST00000360700.4	chrX	84502552:84502657:84510264:84510807:84519280:84519436,	84510265	84510807	84510360	84510360	Frame_Shift_Del	G	-	p.G59fs
LIHC	TCGA-DD-A3A0-01	POF1B	ENST00000373145.3,ENST00000262753.4	chrX	84561186:84561339:84562168:84562282:84563129:84563222,	84562169	84562282	84562220	84562220	Frame_Shift_Del	T	-	p.K371fs
LIHC	TCGA-DD-A3A0-01	CHM	ENST00000358786.4,ENST00000357749.2	chrX	85233770:85233895:85236740:85236813:85282494:85282561,	85236741	85236813	85236773	85236773	Frame_Shift_Del	A	-	p.S53fs
LIHC	TCGA-DD-A3A0-01	KLHL4	ENST00000373114.4,ENST00000373119.4	chrX	86872934:86873131:86877210:86877423:86880609:86880796,	86877211	86877423	86877378	86877378	Frame_Shift_Del	G	-	p.L364fs
LIHC	TCGA-DD-A3A0-01	SYTL4	ENST00000263033.5,ENST00000454200.2,ENST00000372989.1,ENST00000455616.1,ENST00000276141.6	chrX	99941675:99941778:99942063:99942242:99943347:99943440,	99942064	99942242	99942192	99942192	Frame_Shift_Del	C	-	p.G352fs
LIHC	TCGA-DD-A3A0-01	TRMT2B	ENST00000545398.1,ENST00000372931.5,ENST00000372935.1,ENST00000338687.7,ENST00000372936.3,ENST00000372939.1	chrX	100276089:100276304:100276956:100277051:100278458:100278605,	100276957	100277051	100277011	100277011	Frame_Shift_Del	A	-	p.F221fs
LIHC	TCGA-DD-A3A0-01	TRMT2B	ENST00000372931.5,ENST00000338687.7,ENST00000372936.3,ENST00000372939.1	chrX	100296305:100296360:100297030:100297301:100306632:100306722,100296305:100296360:100297030:100297301:100306772:100307071,100296305:100296360:100297030:100297301:100306239:100306355,	100297031	100297301	100297083	100297083	Frame_Shift_Del	T	-	p.S66fs
LIHC	TCGA-DD-A3A0-01	DRP2	ENST00000402866.1,ENST00000395209.3,ENST00000372916.4,ENST00000541709.1,ENST00000538510.1	chrX	100503502:100503588:100505411:100505569:100505905:100506072,	100505412	100505569	100505525	100505525	Frame_Shift_Del	G	-	p.G553fs
LIHC	TCGA-DD-A3A0-01	NRK	ENST00000243300.9,ENST00000428173.2	chrX	105137824:105137935:105139425:105139516:105142576:105142707,	105139426	105139516	105139471	105139471	Frame_Shift_Del	A	-	p.K179fs
LIHC	TCGA-DD-A3A0-01	RNF128	ENST00000324342.3,ENST00000255499.2	chrX	106031147:106031230:106033415:106033512:106034295:106034464,	106033416	106033512	106033503	106033503	Frame_Shift_Del	G	-	p.L325fs
LIHC	TCGA-DD-A3A0-01	TBC1D8B	ENST00000357242.5,ENST00000310452.2	chrX	106069259:106069467:106070399:106070567:106082537:106082687,	106070400	106070567	106070420	106070420	Frame_Shift_Del	A	-	p.T352fs
LIHC	TCGA-DD-A3A0-01	TBC1D8B	ENST00000357242.5,ENST00000276175.3	chrX	106112714:106112771:106113945:106114043:106116799:106117347,	106113946	106114043	106113997	106113997	Frame_Shift_Del	T	-	p.L974fs
LIHC	TCGA-DD-A3A0-01	TMEM164	ENST00000372068.2	chrX	109246322:109246384:109246728:109247392:109310574:109310624,109246342:109246406:109246728:109247392:109310574:109310624,	109246729	109247392	109247142	109247142	Frame_Shift_Del	C	-	p.T47fs
LIHC	TCGA-DD-A3A0-01	TMEM164	ENST00000471255.1	chrX	109245914:109246000:109247110:109247392:109310574:109310624,	109247111	109247392	109247142	109247142	Frame_Shift_Del	C	-	p.T47fs
LIHC	TCGA-DD-A3A0-01	PAK3	ENST00000518291.1,ENST00000360648.4,ENST00000429193.1	chrX	110385323:110385424:110388087:110388150:110390964:110391118,110385323:110385424:110388087:110388150:110389748:110389793,	110388088	110388150	110388092	110388092	Frame_Shift_Del	C	-	p.S94fs
LIHC	TCGA-DD-A3A0-01	ALG13	ENST00000394780.3,ENST00000251943.4,ENST00000495283.1	chrX	110964830:110964939:110966020:110966085:110967025:110967087,	110966021	110966085	110966027	110966027	Frame_Shift_Del	A	-	p.Q481fs
LIHC	TCGA-DD-A3A0-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112065639	112065639	Frame_Shift_Del	G	-	p.P240fs
LIHC	TCGA-DD-A3A0-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112065660	112065660	Frame_Shift_Del	C	-	p.G232fs
LIHC	TCGA-DD-A3A0-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112066109	112066109	Frame_Shift_Del	C	-	p.G82fs
LIHC	TCGA-DD-A3A0-01	IL13RA2	ENST00000243213.1,ENST00000371936.1	chrX	114244083:114244229:114245206:114245391:114248331:114248452,	114245207	114245391	114245223	114245223	Frame_Shift_Del	A	-	p.F230fs
LIHC	TCGA-DD-A3A0-01	LUZP4	ENST00000371920.3	chrX	114536556:114536688:114537864:114537983:114540769:114542119,	114537865	114537983	114537959	114537959	Frame_Shift_Del	A	-	p.L106fs
LIHC	TCGA-DD-A3A0-01	WDR44	ENST00000254029.3,ENST00000371848.3,ENST00000371825.3	chrX	117566743:117566857:117570664:117570787:117575330:117575522,	117570665	117570787	117570775	117570775	Frame_Shift_Del	T	-	p.A654fs
LIHC	TCGA-DD-A3A0-01	WDR44	ENST00000254029.3,ENST00000371848.3,ENST00000371825.3	chrX	117570664:117570787:117576206:117576308:117576527:117576643,117575330:117575522:117576206:117576308:117576527:117576643,	117576207	117576308	117576249	117576249	Frame_Shift_Del	G	-	p.G737fs
LIHC	TCGA-DD-A3A0-01	DOCK11	ENST00000276202.7,ENST00000276204.6	chrX	117775152:117775268:117777419:117777557:117782907:117783090,	117777420	117777557	117777459	117777459	Frame_Shift_Del	A	-	p.K1435fs
LIHC	TCGA-DD-A3A0-01	IL13RA1	ENST00000371666.3	chrX	117900492:117900540:117900806:117900939:117907841:117907938,	117900807	117900939	117900852	117900852	Frame_Shift_Del	A	-	p.N308fs
LIHC	TCGA-DD-A3A0-01	SLC25A43	ENST00000493093.1,ENST00000217909.7	chrX	118544152:118544325:118585971:118586106:118586827:118586904,	118585972	118586106	118586061	118586061	Frame_Shift_Del	G	-	p.Q260fs
LIHC	TCGA-DD-A3A0-01	NKAP	ENST00000371410.3	chrX	119070574:119070645:119072692:119072773:119077182:119077735,	119072693	119072773	119072720	119072720	Frame_Shift_Del	C	-	p.G147fs
LIHC	TCGA-DD-A3A0-01	TMEM255A	ENST00000309720.5,ENST00000371369.4,ENST00000519908.1,ENST00000440464.1	chrX	119425105:119425195:119427843:119427906:119438203:119438268,	119427844	119427906	119427852	119427852	Frame_Shift_Del	T	-	p.R86fs
LIHC	TCGA-DD-A3A0-01	LAMP2	ENST00000486593.1	chrX	119565102:119565317:119572930:119573148:119575584:119575742,	119572931	119573148	119573035	119573035	Frame_Shift_Del	T	-	p.S403fs
LIHC	TCGA-DD-A3A0-01	CUL4B	ENST00000336592.6,ENST00000497616.1,ENST00000404115.3,ENST00000371322.5	chrX	119666276:119666449:119668335:119668441:119669684:119669798,	119668336	119668441	119668380	119668380	Frame_Shift_Del	C	-	p.G741fs
LIHC	TCGA-DD-A3A0-01	MCTS1	ENST00000371317.5,ENST00000493274.1,ENST00000371315.3	chrX	119739933:119740031:119742079:119742213:119744865:119744902,	119742080	119742213	119742112	119742112	Frame_Shift_Del	A	-	p.K100fs
LIHC	TCGA-DD-A3A0-01	MCTS1	ENST00000487133.1	chrX	119739933:119740031:119742079:119742318:119744865:119744933,	119742080	119742318	119742112	119742112	Frame_Shift_Del	A	-	p.K100fs
LIHC	TCGA-DD-A3A0-01	GRIA3	ENST00000371251.1,ENST00000264357.5	chrX	122598715:122598963:122599524:122599639:122613913:122614028,122598715:122598963:122599524:122599639:122616649:122616897,	122599525	122599639	122599549	122599549	Frame_Shift_Del	A	-	p.L783fs
LIHC	TCGA-DD-A3A0-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122800956:122801129:122802009:122802165:122805519:122805612,	122802010	122802165	122802102	122802102	Frame_Shift_Del	T	-	p.I309fs
LIHC	TCGA-DD-A3A0-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1,ENST00000433883.1	chrX	122805519:122805612:122820397:122820564:122829870:122830004,	122820398	122820564	122820534	122820534	Frame_Shift_Del	A	-	p.L211fs
LIHC	TCGA-DD-A3A0-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128633708:128633818:128638710:128638779:128640056:128640188,	128638711	128638779	128638751	128638751	Frame_Shift_Del	T	-	p.N376fs
LIHC	TCGA-DD-A3A0-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128649899:128649971:128650307:128650474:128652337:128652424,	128650308	128650474	128650351	128650351	Frame_Shift_Del	G	-	p.R129fs
LIHC	TCGA-DD-A3A0-01	SASH3	ENST00000356892.3	chrX	128921950:128922046:128922406:128922553:128924915:128925057,	128922407	128922553	128922461	128922461	Frame_Shift_Del	A	-	p.K71fs
LIHC	TCGA-DD-A3A0-01	UTP14A	ENST00000394422.3,ENST00000371042.3,ENST00000425117.2,ENST00000371051.5	chrX	129058770:129059171:129059894:129060088:129060215:129060315,	129059895	129060088	129059939	129059939	Frame_Shift_Del	T	-	p.A598fs
LIHC	TCGA-DD-A3A0-01	ZNF280C	ENST00000370978.4	chrX	129354322:129354454:129360732:129360879:129361655:129361756,	129360733	129360879	129360789	129360789	Frame_Shift_Del	A	-	p.C447fs
LIHC	TCGA-DD-A3A0-01	ENOX2	ENST00000370935.1,ENST00000394363.1,ENST00000338144.3,ENST00000370927.1,ENST00000432489.1	chrX	129803938:129804172:129813515:129813722:129822836:129822992,	129813516	129813722	129813678	129813678	Frame_Shift_Del	T	-	p.T129fs
LIHC	TCGA-DD-A3A0-01	ENOX2	ENST00000370935.1,ENST00000492263.1,ENST00000394363.1,ENST00000338144.3,ENST00000370927.1,ENST00000432489.1	chrX	129813619:129813722:129822836:129822992:129837093:129837228,	129822837	129822992	129822883	129822883	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-DD-A3A0-01	IGSF1	ENST00000370903.3	chrX	130412434:130412725:130413116:130413164:130413244:130413315,	130413117	130413164	130413154	130413154	Frame_Shift_Del	A	-	p.F576fs
LIHC	TCGA-DD-A3A0-01	HPRT1	ENST00000462974.1,ENST00000298556.7,ENST00000475720.1	chrX	133609210:133609394:133620494:133620560:133624217:133624235,	133620495	133620560	133620551	133620551	Frame_Shift_Del	A	-	p.L125fs
LIHC	TCGA-DD-A3A0-01	FAM122C	ENST00000445123.1,ENST00000370785.3,ENST00000470657.1,ENST00000370784.4	chrX	133941569:133941738:133948800:133948879:133963255:133963312,	133948801	133948879	133948859	133948859	Frame_Shift_Del	T	-	p.F93fs
LIHC	TCGA-DD-A3A0-01	MOSPD1	ENST00000370783.3,ENST00000491609.1	chrX	134023152:134023222:134025508:134025670:134030846:134031064,	134025509	134025670	134025573	134025573	Frame_Shift_Del	T	-	p.E182fs
LIHC	TCGA-DD-A3A0-01	ZNF75D	ENST00000370766.3	chrX	134424934:134425061:134425397:134425489:134426206:134426399,	134425398	134425489	134425448	134425448	Frame_Shift_Del	T	-	p.R216fs
LIHC	TCGA-DD-A3A0-01	FHL1	ENST00000434885.1,ENST00000394155.2,ENST00000370690.3,ENST00000539015.1,ENST00000370676.3,ENST00000370674.1,ENST00000452016.1,ENST00000543669.1,ENST00000345434.3,ENST00000535737.1,ENST00000370683.1,ENST00000458357.1,ENST00000394153.2,ENST00000420362.1,ENST00000456445.1,ENST00000449474.1	chrX	135288565:135288747:135289174:135289349:135289950:135290042,	135289175	135289349	135289311	135289311	Frame_Shift_Del	C	-	p.S98fs
LIHC	TCGA-DD-A3A0-01	HTATSF1	ENST00000535601.1,ENST00000218364.4	chrX	135584936:135585100:135586522:135586622:135591249:135591339,	135586523	135586622	135586616	135586616	Frame_Shift_Del	T	-	p.D276fs
LIHC	TCGA-DD-A3A0-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000450801.1,ENST00000370557.1,ENST00000327569.3,ENST00000433868.1,ENST00000359686.2	chrX	138823149:138823253:138825717:138825783:138827880:138827950,	138825718	138825783	138825748	138825748	Frame_Shift_Del	A	-	p.F997fs
LIHC	TCGA-DD-A3A0-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000450801.1,ENST00000370557.1,ENST00000327569.3,ENST00000433868.1,ENST00000359686.2	chrX	138823149:138823253:138825717:138825783:138827880:138827950,	138825718	138825783	138825763	138825763	Frame_Shift_Del	A	-	p.F992fs
LIHC	TCGA-DD-A3A0-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2,ENST00000471746.1	chrX	138850418:138850593:138856848:138857112:138864705:138864792,	138856849	138857112	138856997	138856997	Frame_Shift_Del	G	-	p.L690fs
LIHC	TCGA-DD-A3A0-01	ATP11C	ENST00000485626.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138886629:138886758:138897036:138897144:138899021:138899102,	138897037	138897144	138897042	138897042	Frame_Shift_Del	T	-	p.I141fs
LIHC	TCGA-DD-A3A0-01	ATP11C	ENST00000485626.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138886629:138886758:138897036:138897144:138899021:138899102,	138897037	138897144	138897096	138897096	Frame_Shift_Del	T	-	p.S123fs
LIHC	TCGA-DD-A3A0-01	AFF2	ENST00000370458.1,ENST00000370457.5,ENST00000342251.3	chrX	147582528:147582664:147733519:147733640:147743428:147744289,	147733520	147733640	147733548	147733548	Frame_Shift_Del	A	-	p.K27fs
LIHC	TCGA-DD-A3A0-01	MAMLD1	ENST00000432680.2	chrX	149531685:149531797:149613719:149613878:149631037:149631112,149531685:149531797:149613719:149613878:149638016:149638254,	149613720	149613878	149613830	149613830	Frame_Shift_Del	T	-	p.H16fs
LIHC	TCGA-DD-A3A0-01	MTMR1	ENST00000370390.3,ENST00000445323.2,ENST00000544228.1,ENST00000541925.1	chrX	149912832:149912925:149919201:149919315:149924160:149924337,	149919202	149919315	149919269	149919269	Frame_Shift_Del	T	-	p.L545fs
LIHC	TCGA-DD-A3A0-01	ZNF185	ENST00000318529.8,ENST00000535861.1,ENST00000324823.6,ENST00000449285.2,ENST00000370268.4,ENST00000539731.1,ENST00000426821.2,ENST00000454925.1,ENST00000318504.7	chrX	152137925:152138028:152138986:152139085:152139817:152142015,	152138987	152139085	152138994	152138994	Frame_Shift_Del	T	-	p.I692fs
LIHC	TCGA-DD-A3A0-01	PNCK	ENST00000370142.1,ENST00000466074.1,ENST00000472324.1,ENST00000393831.2,ENST00000447676.2,ENST00000340888.3,ENST00000370145.4	chrX	152935187:152935581:152935904:152936049:152936198:152936269,152935474:152935585:152935904:152936049:152936198:152936269,	152935905	152936049	152935988	152935988	Frame_Shift_Del	C	-	p.G342fs
LIHC	TCGA-DD-A3A0-01	PLXNB3	ENST00000538282.1	chrX	153030956:153031035:153033703:153033883:153034402:153034531,153030956:153031035:153033703:153033883:153034616:153034717,	153033704	153033883	153033721	153033721	Frame_Shift_Del	C	-	p.Y391fs
LIHC	TCGA-DD-A3A0-01	ARHGAP4	ENST00000422918.1	chrX	153178977:153179054:153179231:153179333:153184285:153184507,153178862:153178970:153179231:153179333:153184285:153184507,	153179232	153179333	153179234	153179234	Frame_Shift_Del	C	-	p.E418fs
LIHC	TCGA-DD-A3A0-01	RENBP	ENST00000369997.3,ENST00000423624.1,ENST00000393700.3	chrX	153207025:153207106:153207402:153207484:153208306:153208486,	153207403	153207484	153207450	153207450	Frame_Shift_Del	T	-	p.E241fs
LIHC	TCGA-DD-A3A0-01	HCFC1	ENST00000354233.3,ENST00000310441.7,ENST00000369984.4	chrX	153221641:153221862:153222075:153222214:153222368:153222511,	153222076	153222214	153222153	153222153	Frame_Shift_Del	C	-	p.G853fs
LIHC	TCGA-DD-A3A0-01	HCFC1	ENST00000310441.7,ENST00000369984.4	chrX	153224781:153224942:153225252:153225612:153225685:153225865,	153225253	153225612	153225398	153225398	Frame_Shift_Del	G	-	p.A434fs
LIHC	TCGA-DD-A3A0-01	IRAK1	ENST00000369980.3,ENST00000369973.3	chrX	153277309:153277368:153278493:153278884:153279492:153279555,153278035:153278129:153278493:153278884:153281482:153281524,153278035:153278129:153278493:153278884:153279492:153279555,	153278494	153278884	153278528	153278528	Frame_Shift_Del	C	-	p.G632fs
LIHC	TCGA-DD-A3A0-01	IRAK1	ENST00000437278.1	chrX	153278035:153278129:153278493:153278794:153279492:153279555,153278035:153278129:153278493:153278794:153281482:153281524,	153278494	153278794	153278528	153278528	Frame_Shift_Del	C	-	p.G632fs
LIHC	TCGA-DD-A3A0-01	FLNA	ENST00000490936.1,ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000498491.1,ENST00000369856.3,ENST00000422373.1,ENST00000420627.1	chrX	153577729:153577933:153578016:153578235:153578398:153578575,	153578017	153578235	153578043	153578043	Frame_Shift_Del	C	-	p.G2501fs
LIHC	TCGA-DD-A3A0-01	FLNA	ENST00000498491.1	chrX	153578398:153578575:153579276:153579409:153579948:153580064,153578398:153578575:153579276:153579409:153579507:153579571,	153579277	153579409	153579286	153579286	Frame_Shift_Del	T	-	p.I2375fs
LIHC	TCGA-DD-A3A0-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153590609:153590700:153590785:153590946:153591028:153591152,	153590786	153590946	153590824	153590824	Frame_Shift_Del	C	-	p.A843fs
LIHC	TCGA-DD-A3A0-01	TAZ	ENST00000476679.1,ENST00000299328.5,ENST00000426231.1,ENST00000351413.4	chrX	153641865:153641904:153642437:153642527:153647881:153647962,	153642438	153642527	153642511	153642511	Frame_Shift_Del	A	-	p.G148fs
LIHC	TCGA-DD-A3A0-01	GDI1	ENST00000445564.1,ENST00000481304.1,ENST00000447750.2,ENST00000491154.1	chrX	153667110:153667210:153667351:153667486:153668287:153668319,	153667352	153667486	153667434	153667434	Frame_Shift_Del	G	-	p.K112fs
LIHC	TCGA-DD-A3A0-01	BRCC3	ENST00000330045.7,ENST00000340647.4,ENST00000453705.1	chrX	154319058:154319114:154344331:154344463:154344985:154345029,	154344332	154344463	154344346	154344346	Frame_Shift_Del	A	-	p.E213fs
LIHC	TCGA-DD-A3A0-01	USP9Y	ENST00000426564.2,ENST00000338981.3	chrY	14870435:14870572:14872413:14872547:14883001:14883089,	14872414	14872547	14872503	14872503	Frame_Shift_Del	A	-	p.E619fs
LIHC	TCGA-DD-A3A0-01	USP9Y	ENST00000426564.2,ENST00000338981.3	chrY	14928058:14928279:14930354:14930545:14945613:14945787,	14930355	14930545	14930498	14930498	Frame_Shift_Del	T	-	p.A1658fs
LIHC	TCGA-DD-A3A0-01	UTY	ENST00000538878.1,ENST00000331397.4,ENST00000382896.4,ENST00000540140.1,ENST00000362096.4,ENST00000545955.1,ENST00000329134.5	chrY	15438100:15438230:15447442:15448215:15466882:15467278,	15447443	15448215	15447736	15447736	Frame_Shift_Del	A	-	p.I750fs
LIHC	TCGA-DD-A3A0-01	UTY	ENST00000538878.1,ENST00000331397.4,ENST00000382896.4,ENST00000540140.1,ENST00000362096.4,ENST00000545955.1,ENST00000329134.5	chrY	15438100:15438230:15447442:15448215:15466882:15467278,	15447443	15448215	15447897	15447897	Frame_Shift_Del	A	-	p.S697fs
LIHC	TCGA-DD-A3A0-01	UTY	ENST00000538878.1,ENST00000331397.4,ENST00000382896.4,ENST00000540140.1,ENST00000362096.4,ENST00000545955.1,ENST00000329134.5	chrY	15438100:15438230:15447442:15448215:15466882:15467278,	15447443	15448215	15447971	15447971	Frame_Shift_Del	T	-	p.N672fs
LIHC	TCGA-DD-A3A0-01	UTY	ENST00000545955.1	chrY	15469756:15469849:15470967:15471102:15471646:15471866,15470343:15470433:15470967:15471102:15471646:15471866,	15470968	15471102	15471055	15471055	Frame_Shift_Del	T	-	p.K411fs
LIHC	TCGA-DD-A3A0-01	KDM5D	ENST00000440077.1,ENST00000382806.2,ENST00000492117.1,ENST00000317961.4,ENST00000541639.1	chrY	21872261:21872358:21877237:21877385:21877500:21877625,	21877238	21877385	21877381	21877381	Frame_Shift_Del	A	-	p.F812fs
LIHC	TCGA-DD-A3A1-01	PEX14	ENST00000356607.4,ENST00000491661.2	chr1	10555330:10555378:10596269:10596354:10659294:10659423,	10596270	10596354	10596339	10596339	Frame_Shift_Del	T	-	p.F52fs
LIHC	TCGA-DD-A3A1-01	FHL3	ENST00000475084.1	chr1	38463016:38463231:38463355:38463542:38464645:38464820,	38463356	38463542	38463363	38463363	Frame_Shift_Del	G	-	p.P227fs
LIHC	TCGA-DD-A3A1-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39797076	39797076	Frame_Shift_Del	C	-	p.P1606fs
LIHC	TCGA-DD-A3A1-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39894913:39894998:39895498:39895740:39896373:39896580,	39895499	39895740	39895523	39895523	Frame_Shift_Del	A	-	p.E5638fs
LIHC	TCGA-DD-A3A1-01	ZMPSTE24	ENST00000372759.3	chr1	40734090:40734207:40735646:40735799:40737565:40737707,	40735647	40735799	40735729	40735729	Frame_Shift_Del	T	-	p.L186fs
LIHC	TCGA-DD-A3A1-01	COL9A2	ENST00000482722.1,ENST00000372748.3,ENST00000466267.1	chr1	40767483:40767561:40768292:40768481:40768802:40768857,	40768293	40768481	40768440	40768440	Frame_Shift_Del	G	-	p.L549fs
LIHC	TCGA-DD-A3A1-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42050295	42050295	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-DD-A3A1-01	KIF2C	ENST00000372224.4,ENST00000493027.1,ENST00000372218.4	chr1	45205533:45205674:45206584:45206679:45213055:45213157,	45206585	45206679	45206626	45206626	Frame_Shift_Del	A	-	p.K38fs
LIHC	TCGA-DD-A3A1-01	BTBD19	ENST00000409335.2	chr1	45274482:45274578:45275884:45276098:45276225:45276279,45274482:45274578:45275884:45276098:45278667:45278736,	45275885	45276098	45275923	45275923	Frame_Shift_Del	T	-	p.V42fs
LIHC	TCGA-DD-A3A1-01	ELAVL4	ENST00000448907.2,ENST00000371821.1,ENST00000371823.4,ENST00000371819.1,ENST00000357083.4,ENST00000371827.1,ENST00000371824.1	chr1	50610628:50610869:50642760:50642864:50659436:50659590,	50642761	50642864	50642814	50642814	Frame_Shift_Del	A	-	p.K102fs
LIHC	TCGA-DD-A3A1-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676428	53676428	Frame_Shift_Del	C	-	p.A361fs
LIHC	TCGA-DD-A3A1-01	TM2D1	ENST00000496465.1,ENST00000371177.2,ENST00000371180.2,ENST00000371178.1,ENST00000488206.1,ENST00000468586.1,ENST00000606498.1,ENST00000294613.5	chr1	62166605:62166697:62175000:62175109:62189384:62189444,	62175001	62175109	62175042	62175042	Frame_Shift_Del	C	-	p.G102fs
LIHC	TCGA-DD-A3A1-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62913011:62913182:62914135:62914337:62915916:62917473,	62914136	62914337	62914271	62914271	Frame_Shift_Del	T	-	p.L520fs
LIHC	TCGA-DD-A3A1-01	ST6GALNAC5	ENST00000477717.1	chr1	77461141:77461205:77509888:77510298:77515942:77516001,77334181:77334427:77509888:77510298:77515942:77516001,	77509889	77510298	77509956	77509956	Frame_Shift_Del	A	-	p.Q110fs
LIHC	TCGA-DD-A3A1-01	AK5	ENST00000317704.4	chr1	77752627:77752812:77759549:77759645:77763243:77763375,	77759550	77759645	77759626	77759626	Frame_Shift_Del	A	-	p.P106fs
LIHC	TCGA-DD-A3A1-01	AK5	ENST00000344720.5,ENST00000478407.1,ENST00000354567.2	chr1	77752627:77752812:77759477:77759645:77763243:77763375,	77759478	77759645	77759626	77759626	Frame_Shift_Del	A	-	p.P106fs
LIHC	TCGA-DD-A3A1-01	AK5	ENST00000344720.5,ENST00000530826.1,ENST00000354567.2	chr1	77984248:77984412:77987511:77987628:78001531:78001570,	77987512	77987628	77987557	77987557	Frame_Shift_Del	G	-	p.G427fs
LIHC	TCGA-DD-A3A1-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648050	85648050	Frame_Shift_Del	A	-	p.C760fs
LIHC	TCGA-DD-A3A1-01	GBP3	ENST00000235878.5,ENST00000370481.4,ENST00000493594.2	chr1	89477510:89477710:89478867:89479110:89479765:89479962,	89478868	89479110	89479033	89479033	Frame_Shift_Del	C	-	p.V235fs
LIHC	TCGA-DD-A3A1-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405103	91405103	Frame_Shift_Del	T	-	p.K603fs
LIHC	TCGA-DD-A3A1-01	SORT1	ENST00000538502.1,ENST00000256637.6,ENST00000493736.1,ENST00000482236.1	chr1	109897106:109897153:109897988:109898091:109910029:109910103,	109897989	109898091	109898022	109898022	Frame_Shift_Del	A	-	p.F170fs
LIHC	TCGA-DD-A3A1-01	CHI3L2	ENST00000369744.2,ENST00000445067.2,ENST00000466741.1,ENST00000529459.1,ENST00000369748.4,ENST00000497220.1	chr1	111783948:111784065:111784848:111784988:111785838:111786054,	111784849	111784988	111784921	111784921	Frame_Shift_Del	A	-	p.K370fs
LIHC	TCGA-DD-A3A1-01	AP4B1	ENST00000369569.1,ENST00000369567.1,ENST00000256658.4	chr1	114438378:114438660:114438879:114439087:114440461:114440565,	114438880	114439087	114439085	114439085	Frame_Shift_Del	C	-	p.G435fs
LIHC	TCGA-DD-A3A1-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789267	150789267	Frame_Shift_Del	A	-	p.F600fs
LIHC	TCGA-DD-A3A1-01	CERS2	ENST00000345896.4,ENST00000460664.1,ENST00000560793.2,ENST00000561294.1,ENST00000368949.4,ENST00000368954.5,ENST00000271688.6	chr1	150939039:150939105:150939231:150939338:150939549:150939678,	150939232	150939338	150939254	150939254	Frame_Shift_Del	G	-	p.R276fs
LIHC	TCGA-DD-A3A1-01	SELENBP1	ENST00000498494.1,ENST00000423070.1,ENST00000427977.2,ENST00000473693.1,ENST00000368868.5,ENST00000427867.2,ENST00000426705.2,ENST00000455397.1,ENST00000443708.1,ENST00000435071.1	chr1	151340674:151340795:151341917:151342030:151342188:151342245,151341543:151341665:151341917:151342030:151342188:151342245,	151341918	151342030	151341950	151341950	Frame_Shift_Del	C	-	p.D90fs
LIHC	TCGA-DD-A3A1-01	SELENBP1	ENST00000470345.1,ENST00000474352.1	chr1	151340674:151340795:151341479:151342245:151345113:151345159,	151341480	151342245	151341950	151341950	Frame_Shift_Del	C	-	p.D90fs
LIHC	TCGA-DD-A3A1-01	SELENBP1	ENST00000458566.1	chr1	151341543:151341665:151341917:151341982:151342188:151342245,	151341918	151341982	151341950	151341950	Frame_Shift_Del	C	-	p.D90fs
LIHC	TCGA-DD-A3A1-01	SELENBP1	ENST00000492643.1,ENST00000493560.1,ENST00000463664.1	chr1	151340674:151340795:151341479:151342030:151342188:151342245,	151341480	151342030	151341950	151341950	Frame_Shift_Del	C	-	p.D90fs
LIHC	TCGA-DD-A3A1-01	TDRKH	ENST00000440583.2,ENST00000458431.2,ENST00000526413.1,ENST00000525790.1,ENST00000368827.6,ENST00000368822.1,ENST00000368823.1,ENST00000368824.3,ENST00000368825.3	chr1	151746888:151746980:151747185:151747282:151747540:151747642,	151747186	151747282	151747233	151747233	Frame_Shift_Del	T	-	p.K529fs
LIHC	TCGA-DD-A3A1-01	UBAP2L	ENST00000271877.7,ENST00000428931.1,ENST00000343815.6,ENST00000466173.1,ENST00000361546.2	chr1	154215692:154215778:154218679:154218851:154221714:154221913,	154218680	154218851	154218701	154218701	Frame_Shift_Del	G	-	p.L288fs
LIHC	TCGA-DD-A3A1-01	DCST2	ENST00000368424.3,ENST00000485982.1,ENST00000295536.5,ENST00000368423.1	chr1	154999023:154999191:155001708:155001873:155002559:155002717,	155001709	155001873	155001850	155001850	Frame_Shift_Del	C	-	p.E401fs
LIHC	TCGA-DD-A3A1-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155327106:155327201:155327375:155327540:155330091:155330200,	155327376	155327540	155327514	155327514	Frame_Shift_Del	T	-	p.K2279fs
LIHC	TCGA-DD-A3A1-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823267	155823267	Frame_Shift_Del	C	-	p.G102fs
LIHC	TCGA-DD-A3A1-01	CCT3	ENST00000368258.3,ENST00000368261.3,ENST00000472765.2,ENST00000295688.3,ENST00000368262.3,ENST00000368259.2	chr1	156287205:156287338:156288658:156288808:156290629:156290816,	156288659	156288808	156288753	156288753	Frame_Shift_Del	T	-	p.K222fs
LIHC	TCGA-DD-A3A1-01	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157736644:157736761:157737020:157737299:157738203:157738491,	157737021	157737299	157737240	157737240	Frame_Shift_Del	C	-	p.D315fs
LIHC	TCGA-DD-A3A1-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898452	159898452	Frame_Shift_Del	G	-	p.P910fs
LIHC	TCGA-DD-A3A1-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159906543:159906698:159907475:159907628:159912752:159912941,	159907476	159907628	159907605	159907605	Frame_Shift_Del	C	-	p.A91fs
LIHC	TCGA-DD-A3A1-01	VANGL2	ENST00000368061.2	chr1	160385851:160385972:160388791:160389399:160390200:160390337,	160388792	160389399	160388920	160388920	Frame_Shift_Del	G	-	p.L107fs
LIHC	TCGA-DD-A3A1-01	ARHGAP30	ENST00000368015.1,ENST00000490279.1,ENST00000368016.3,ENST00000368013.3	chr1	161022075:161022153:161022229:161022333:161022415:161022587,	161022230	161022333	161022309	161022309	Frame_Shift_Del	C	-	p.R287fs
LIHC	TCGA-DD-A3A1-01	DDR2	ENST00000367921.3,ENST00000367922.3	chr1	162741813:162742037:162743258:162743386:162745441:162745633,	162743259	162743386	162743311	162743311	Frame_Shift_Del	C	-	p.A594fs
LIHC	TCGA-DD-A3A1-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166818944	166818944	Frame_Shift_Del	A	-	p.V376fs
LIHC	TCGA-DD-A3A1-01	TBX19	ENST00000367821.3,ENST00000431969.1	chr1	168262381:168262516:168266961:168267023:168269659:168269721,	168266962	168267023	168266974	168266974	Frame_Shift_Del	A	-	p.K206fs
LIHC	TCGA-DD-A3A1-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169512025	169512025	Frame_Shift_Del	T	-	p.N773fs
LIHC	TCGA-DD-A3A1-01	DNM3	ENST00000355305.5,ENST00000358155.4,ENST00000367731.1	chr1	172356327:172356499:172357712:172357949:172376911:172377494,	172357713	172357949	172357846	172357846	Frame_Shift_Del	T	-	p.F807fs
LIHC	TCGA-DD-A3A1-01	SEC16B	ENST00000327037.4,ENST00000528461.1,ENST00000308284.6	chr1	177911034:177911175:177913695:177913801:177915554:177915666,	177913696	177913801	177913727	177913727	Frame_Shift_Del	C	-	p.G617fs
LIHC	TCGA-DD-A3A1-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128554	202128554	Frame_Shift_Del	G	-	p.L98fs
LIHC	TCGA-DD-A3A1-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128554	202128554	Frame_Shift_Del	G	-	p.L98fs
LIHC	TCGA-DD-A3A1-01	CYB5R1	ENST00000478009.1,ENST00000473599.1	chr1	202935014:202935121:202935876:202936026:202936318:202936353,202935655:202935728:202935876:202936026:202936318:202936353,	202935877	202936026	202935999	202935999	Frame_Shift_Del	C	-	p.V15fs
LIHC	TCGA-DD-A3A1-01	RBBP5	ENST00000367164.1	chr1	205083916:205084089:205084985:205085011:205090982:205091094,	205084986	205085011	205084996	205084996	Frame_Shift_Del	T	-	p.N12fs
LIHC	TCGA-DD-A3A1-01	HHAT	ENST00000391905.3,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000261458.3	chr1	210502296:210502448:210536195:210536263:210560811:210560925,210522276:210522410:210536195:210536263:210560811:210560925,	210536196	210536263	210536257	210536257	Frame_Shift_Del	A	-	p.L51fs
LIHC	TCGA-DD-A3A1-01	HHAT	ENST00000308852.6,ENST00000545154.1,ENST00000367009.1,ENST00000541565.1,ENST00000367010.1,ENST00000537898.1,ENST00000413764.2,ENST00000545781.1,ENST00000261458.3	chr1	210761241:210761443:210796869:210797014:210847629:210847751,	210796870	210797014	210796966	210796966	Frame_Shift_Del	G	-	p.G449fs
LIHC	TCGA-DD-A3A1-01	KCNH1	ENST00000271751.4,ENST00000367007.4	chr1	211256121:211256240:211263903:211264032:211276837:211276944,	211263904	211264032	211263943	211263943	Frame_Shift_Del	T	-	p.T134fs
LIHC	TCGA-DD-A3A1-01	EPRS	ENST00000366923.3,ENST00000609181.1	chr1	220198473:220198600:220203727:220203822:220205728:220205868,	220203728	220203822	220203779	220203779	Frame_Shift_Del	G	-	p.P191fs
LIHC	TCGA-DD-A3A1-01	TP53BP2	ENST00000498843.1,ENST00000343537.7,ENST00000391878.2	chr1	223985916:223986379:223987600:223987749:223988401:223988428,	223987601	223987749	223987652	223987652	Frame_Shift_Del	A	-	p.F349fs
LIHC	TCGA-DD-A3A1-01	DNAH14	ENST00000430092.1,ENST00000327794.6,ENST00000445597.2,ENST00000439375.2	chr1	225528158:225528403:225533663:225534082:225534157:225534356,	225533664	225534082	225533711	225533711	Frame_Shift_Del	A	-	p.K3483fs
LIHC	TCGA-DD-A3A1-01	ABCB10	ENST00000344517.4	chr1	229676352:229676499:229677983:229678118:229683245:229683448,	229677984	229678118	229678055	229678055	Frame_Shift_Del	C	-	p.A329fs
LIHC	TCGA-DD-A3A1-01	C1orf198	ENST00000366663.5,ENST00000523410.1,ENST00000470540.1	chr1	230975366:230975654:230979099:230979642:230991413:230991464,	230979100	230979642	230979363	230979363	Frame_Shift_Del	C	-	p.E222fs
LIHC	TCGA-DD-A3A1-01	LYST	ENST00000389794.3,ENST00000389793.2	chr1	235909767:235909827:235914509:235914662:235915304:235915471,	235914510	235914662	235914604	235914604	Frame_Shift_Del	G	-	p.T2563fs
LIHC	TCGA-DD-A3A1-01	ZNF695	ENST00000487338.2	chr1	247130996:247131094:247151426:247151557:247162649:247162742,	247151427	247151557	247151504	247151504	Frame_Shift_Del	A	-	p.S105fs
LIHC	TCGA-DD-A3A1-01	ZNF695	ENST00000479214.1,ENST00000366504.2	chr1	247130996:247131094:247151422:247151557:247162649:247162742,	247151423	247151557	247151504	247151504	Frame_Shift_Del	A	-	p.S105fs
LIHC	TCGA-DD-A3A1-01	ADAM17	ENST00000310823.3	chr2	9645294:9645494:9650107:9650260:9658029:9658118,	9650108	9650260	9650219	9650219	Frame_Shift_Del	A	-	p.F411fs
LIHC	TCGA-DD-A3A1-01	ADAM17	ENST00000310823.3	chr2	9658029:9658118:9658231:9658376:9661331:9661445,	9658232	9658376	9658337	9658337	Frame_Shift_Del	A	-	p.C333fs
LIHC	TCGA-DD-A3A1-01	EMILIN1	ENST00000433140.1,ENST00000380320.4	chr2	27307858:27307876:27308027:27308165:27308545:27309271,	27308028	27308165	27308035	27308035	Frame_Shift_Del	G	-	p.E861fs
LIHC	TCGA-DD-A3A1-01	KRTCAP3	ENST00000288873.3,ENST00000407293.1,ENST00000464699.1,ENST00000543753.1,ENST00000453171.1	chr2	27665708:27665768:27665940:27666147:27666264:27666399,	27665941	27666147	27665949	27665949	Frame_Shift_Del	C	-	p.V94fs
LIHC	TCGA-DD-A3A1-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32832521:32832710:32836514:32836649:32842791:32843943,	32836515	32836649	32836609	32836609	Frame_Shift_Del	G	-	p.R4785fs
LIHC	TCGA-DD-A3A1-01	PRKD3	ENST00000379066.1,ENST00000469275.1,ENST00000234179.2	chr2	37486725:37486824:37487365:37487527:37494572:37494679,	37487366	37487527	37487502	37487502	Frame_Shift_Del	T	-	p.N637fs
LIHC	TCGA-DD-A3A1-01	PKDCC	ENST00000492861.1,ENST00000401498.2	chr2	42275913:42275978:42280378:42280501:42281175:42281447,	42280379	42280501	42280444	42280444	Frame_Shift_Del	G	-	p.L235fs
LIHC	TCGA-DD-A3A1-01	PLEKHH2	ENST00000490038.1	chr2	43980757:43980899:43986038:43986168:43989442:43989529,	43986039	43986168	43986149	43986149	Frame_Shift_Del	C	-	p.A1351fs
LIHC	TCGA-DD-A3A1-01	PPP1R21	ENST00000431614.1,ENST00000416913.1,ENST00000294952.8	chr2	48722817:48722910:48725631:48725874:48732702:48732735,	48725632	48725874	48725672	48725672	Frame_Shift_Del	A	-	p.E578fs
LIHC	TCGA-DD-A3A1-01	ACTR2	ENST00000260641.5	chr2	65466985:65467096:65473657:65473873:65478160:65478233,	65473658	65473873	65473814	65473814	Frame_Shift_Del	A	-	p.K106fs
LIHC	TCGA-DD-A3A1-01	GCFC2	ENST00000427862.1	chr2	75899075:75899142:75900569:75900646:75907318:75907440,75899075:75899142:75900569:75900646:75914952:75915018,	75900570	75900646	75900635	75900635	Frame_Shift_Del	T	-	p.K608fs
LIHC	TCGA-DD-A3A1-01	DNAH6	ENST00000389394.3,ENST00000237449.6	chr2	84930518:84930686:84931190:84931426:84932609:84932871,	84931191	84931426	84931329	84931329	Frame_Shift_Del	T	-	p.L2790fs
LIHC	TCGA-DD-A3A1-01	CNNM3	ENST00000305510.3	chr2	97481986:97483239:97490794:97490938:97492569:97492646,	97490795	97490938	97490808	97490808	Frame_Shift_Del	G	-	p.L413fs
LIHC	TCGA-DD-A3A1-01	SEMA4C	ENST00000305476.5,ENST00000482925.1	chr2	97529662:97529885:97529974:97530119:97530441:97530617,	97529975	97530119	97530050	97530050	Frame_Shift_Del	G	-	p.P344fs
LIHC	TCGA-DD-A3A1-01	TSGA10	ENST00000542655.1	chr2	99689480:99689536:99695121:99695276:99697744:99697860,99688268:99688337:99695121:99695276:99697744:99697860,	99695122	99695276	99695227	99695227	Frame_Shift_Del	A	-	p.L259fs
LIHC	TCGA-DD-A3A1-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086542	109086542	Frame_Shift_Del	A	-	p.K253fs
LIHC	TCGA-DD-A3A1-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2,ENST00000468475.1	chr2	113304997:113305144:113306843:113306976:113308442:113308485,	113306844	113306976	113306878	113306878	Frame_Shift_Del	A	-	p.E176fs
LIHC	TCGA-DD-A3A1-01	RAB3GAP1	ENST00000539493.1,ENST00000264158.8,ENST00000442034.1,ENST00000487003.1	chr2	135878388:135878488:135881734:135881816:135883750:135883819,	135881735	135881816	135881762	135881762	Frame_Shift_Del	T	-	p.V259fs
LIHC	TCGA-DD-A3A1-01	SCN1A	ENST00000423058.2,ENST00000303395.4,ENST00000375405.3,ENST00000409050.1	chr2	166856232:166856286:166858981:166859263:166866228:166866351,	166858982	166859263	166859220	166859220	Frame_Shift_Del	T	-	p.N1349fs
LIHC	TCGA-DD-A3A1-01	G6PC2	ENST00000429379.2	chr2	169757834:169758059:169758954:169759064:169761014:169761126,	169758955	169759064	169759009	169759009	Frame_Shift_Del	A	-	p.P91fs
LIHC	TCGA-DD-A3A1-01	SCRN3	ENST00000490927.1	chr2	175260472:175260545:175264649:175264831:175265717:175265782,	175264650	175264831	175264792	175264792	Frame_Shift_Del	T	-	p.V101fs
LIHC	TCGA-DD-A3A1-01	PRKRA	ENST00000490501.1,ENST00000325748.4,ENST00000487082.1,ENST00000432031.2,ENST00000424699.1,ENST00000438687.3	chr2	179296702:179296981:179300871:179301046:179306336:179306431,	179300872	179301046	179300978	179300978	Frame_Shift_Del	G	-	p.I226fs
LIHC	TCGA-DD-A3A1-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183866680:183866771:183866854:183866997:183867701:183867758,	183866855	183866997	183866901	183866901	Frame_Shift_Del	T	-	p.I163fs
LIHC	TCGA-DD-A3A1-01	SF3B1	ENST00000414174.1	chr2	198285752:198285857:198288617:198288698:198299695:198299740,	198288618	198288698	198288632	198288632	Frame_Shift_Del	C	-	p.G32fs
LIHC	TCGA-DD-A3A1-01	SF3B1	ENST00000414963.2,ENST00000487698.1,ENST00000409915.4	chr2	198285752:198285857:198288531:198288698:198299695:198299740,	198288532	198288698	198288632	198288632	Frame_Shift_Del	C	-	p.G32fs
LIHC	TCGA-DD-A3A1-01	NBEAL1	ENST00000414576.2,ENST00000434469.1,ENST00000449802.1	chr2	204073359:204073476:204073883:204074045:204075680:204075829,	204073884	204074045	204073977	204073977	Frame_Shift_Del	A	-	p.N2544fs
LIHC	TCGA-DD-A3A1-01	KANSL1L	ENST00000428655.1,ENST00000452086.1,ENST00000418791.1,ENST00000281772.9,ENST00000457374.1	chr2	210908662:210908828:210940275:210940480:210962809:210962931,	210940276	210940480	210940290	210940290	Frame_Shift_Del	A	-	p.Y581fs
LIHC	TCGA-DD-A3A1-01	ERBB4	ENST00000484594.1,ENST00000342788.4,ENST00000436443.1	chr2	212495186:212495319:212522478:212522553:212530047:212530079,	212522479	212522553	212522515	212522515	Frame_Shift_Del	G	-	p.P637fs
LIHC	TCGA-DD-A3A1-01	ACSL3	ENST00000392066.3,ENST00000357430.3	chr2	223789271:223789313:223791734:223791907:223793579:223793654,	223791735	223791907	223791868	223791868	Frame_Shift_Del	G	-	p.G476fs
LIHC	TCGA-DD-A3A1-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225362469:225362566:225365079:225365204:225367681:225367789,	225365080	225365204	225365116	225365116	Frame_Shift_Del	G	-	p.P526fs
LIHC	TCGA-DD-A3A1-01	MFF	ENST00000304593.9	chr2	228207460:228207535:228211941:228212100:228217229:228217289,228205007:228205096:228211941:228212100:228220392:228220477,228205007:228205096:228211941:228212100:228217229:228217289,	228211942	228212100	228211979	228211979	Frame_Shift_Del	C	-	p.P211fs
LIHC	TCGA-DD-A3A1-01	CHL1	ENST00000445697.1	chr3	433357:433480:436375:436555:440699:440831,	436376	436555	436477	436477	Frame_Shift_Del	A	-	p.K1006fs
LIHC	TCGA-DD-A3A1-01	OSBPL10	ENST00000438237.2,ENST00000396556.2,ENST00000429492.2	chr3	31743867:31744000:31774748:31774903:31789401:31789612,	31774749	31774903	31774900	31774900	Frame_Shift_Del	T	-	p.N315fs
LIHC	TCGA-DD-A3A1-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000432299.1,ENST00000536378.1,ENST00000441265.1,ENST00000466900.1	chr3	37035063:37035154:37038109:37038200:37042445:37042539,37035338:37035381:37038109:37038200:37042445:37042539,	37038110	37038200	37038119	37038119	Frame_Shift_Del	A	-	p.A42fs
LIHC	TCGA-DD-A3A1-01	MLH1	ENST00000454028.1	chr3	37035063:37035154:37038114:37038200:37042445:37042539,	37038115	37038200	37038119	37038119	Frame_Shift_Del	A	-	p.A42fs
LIHC	TCGA-DD-A3A1-01	TGM4	ENST00000296125.4	chr3	44926816:44926990:44929180:44929287:44932094:44932224,	44929181	44929287	44929257	44929257	Frame_Shift_Del	G	-	p.Q90fs
LIHC	TCGA-DD-A3A1-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47629079:47629796:47632150:47632327:47651555:47651817,	47632151	47632327	47632282	47632282	Frame_Shift_Del	G	-	p.P1030fs
LIHC	TCGA-DD-A3A1-01	SLC25A20	ENST00000319017.4,ENST00000440964.1,ENST00000430379.1,ENST00000544097.1	chr3	48895939:48896064:48896524:48896634:48896987:48897060,	48896525	48896634	48896583	48896583	Frame_Shift_Del	C	-	p.G220fs
LIHC	TCGA-DD-A3A1-01	ARIH2	ENST00000484999.1	chr3	48960197:48960244:48964894:48965246:48999044:48999071,48962150:48962272:48964894:48965246:48982568:48982614,48962150:48962272:48964894:48965246:48999044:48999071,48960197:48960244:48964894:48965246:48982568:48982614,	48964895	48965246	48965138	48965138	Frame_Shift_Del	G	-	p.Q49fs
LIHC	TCGA-DD-A3A1-01	P4HTM	ENST00000472301.1,ENST00000343546.4,ENST00000444213.1	chr3	49027835:49028043:49028265:49028347:49038870:49038995,	49028266	49028347	49028331	49028331	Frame_Shift_Del	C	-	p.L140fs
LIHC	TCGA-DD-A3A1-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005265	50005265	Frame_Shift_Del	G	-	p.R4fs
LIHC	TCGA-DD-A3A1-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005265	50005265	Frame_Shift_Del	G	-	p.R4fs
LIHC	TCGA-DD-A3A1-01	RBM5	ENST00000489437.1,ENST00000347869.3,ENST00000464087.2	chr3	50147044:50147121:50147811:50147896:50148111:50148190,	50147812	50147896	50147879	50147879	Frame_Shift_Del	T	-	p.V449fs
LIHC	TCGA-DD-A3A1-01	ITIH3	ENST00000416872.2,ENST00000449956.2,ENST00000465243.2	chr3	52833768:52833937:52834553:52834679:52834980:52835079,	52834554	52834679	52834559	52834559	Frame_Shift_Del	A	-	p.N361fs
LIHC	TCGA-DD-A3A1-01	PTPRG	ENST00000474889.1,ENST00000295874.10	chr3	61547584:61548046:61734551:61734656:61975298:61975478,	61734552	61734656	61734637	61734637	Frame_Shift_Del	C	-	p.D57fs
LIHC	TCGA-DD-A3A1-01	ST3GAL6	ENST00000497621.1,ENST00000469105.1,ENST00000483910.1,ENST00000265261.6,ENST00000462152.1,ENST00000394162.1,ENST00000486249.1	chr3	98507169:98507307:98510684:98510837:98512518:98512609,	98510685	98510837	98510795	98510795	Frame_Shift_Del	T	-	p.P171fs
LIHC	TCGA-DD-A3A1-01	RPN1	ENST00000296255.3,ENST00000497289.1	chr3	128348793:128348986:128350790:128351000:128356641:128356948,	128350791	128351000	128350863	128350863	Frame_Shift_Del	A	-	p.L257fs
LIHC	TCGA-DD-A3A1-01	EFCAB12	ENST00000505956.1,ENST00000503498.1	chr3	129121365:129121422:129123092:129123246:129127487:129127701,	129123093	129123246	129123124	129123124	Frame_Shift_Del	G	-	p.Q458fs
LIHC	TCGA-DD-A3A1-01	SLCO2A1	ENST00000462770.1	chr3	133666099:133666289:133667379:133667544:133692506:133692669,	133667380	133667544	133667528	133667528	Frame_Shift_Del	A	-	p.F319fs
LIHC	TCGA-DD-A3A1-01	STAG1	ENST00000487065.1,ENST00000434713.2,ENST00000483235.1	chr3	136260960:136261037:136287606:136287703:136323150:136323315,136260960:136261037:136287606:136287703:136305643:136305768,	136287607	136287703	136287619	136287619	Frame_Shift_Del	A	-	p.S128fs
LIHC	TCGA-DD-A3A1-01	TM4SF1	ENST00000493348.1	chr3	149087284:149087667:149089473:149089654:149093466:149093556,	149089474	149089654	149089648	149089648	Frame_Shift_Del	A	-	p.L52fs
LIHC	TCGA-DD-A3A1-01	PDCD10	ENST00000470131.1,ENST00000492396.1,ENST00000497056.2,ENST00000461494.1,ENST00000475915.2,ENST00000392750.2,ENST00000473645.2	chr3	167402126:167402177:167405021:167405104:167405402:167405481,	167405022	167405104	167405062	167405062	Frame_Shift_Del	T	-	p.S173fs
LIHC	TCGA-DD-A3A1-01	CLDN16	ENST00000264734.2	chr3	190122589:190122715:190126102:190126294:190127691:190127797,	190126103	190126294	190126242	190126242	Frame_Shift_Del	G	-	p.L244fs
LIHC	TCGA-DD-A3A1-01	ZFYVE28	ENST00000515312.1,ENST00000290974.2	chr4	2306015:2307263:2321896:2321998:2337431:2337521,	2321897	2321998	2321905	2321905	Frame_Shift_Del	C	-	p.R265fs
LIHC	TCGA-DD-A3A1-01	ZFYVE28	ENST00000515169.1	chr4	2321896:2321998:2337431:2337521:2339133:2339223,2330532:2330869:2337431:2337521:2339133:2339223,	2337432	2337521	2337466	2337466	Frame_Shift_Del	G	-	p.L223fs
LIHC	TCGA-DD-A3A1-01	SULT1E1	ENST00000226444.3	chr4	70713415:70713510:70715154:70715281:70719934:70720032,	70715155	70715281	70715215	70715215	Frame_Shift_Del	C	-	p.A146fs
LIHC	TCGA-DD-A3A1-01	NPFFR2	ENST00000358749.3	chr4	72905090:72905130:72994301:72994636:73003756:73003856,	72994302	72994636	72994399	72994399	Frame_Shift_Del	A	-	p.N133fs
LIHC	TCGA-DD-A3A1-01	FRAS1	ENST00000502446.1,ENST00000264895.6,ENST00000325942.6,ENST00000264899.6	chr4	79173545:79173705:79176395:79176529:79186178:79186262,	79176396	79176529	79176479	79176479	Frame_Shift_Del	G	-	p.G185fs
LIHC	TCGA-DD-A3A1-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84374764	84374764	Frame_Shift_Del	T	-	p.N211fs
LIHC	TCGA-DD-A3A1-01	DAPP1	ENST00000512369.1	chr4	100784926:100785012:100787190:100787278:100789273:100789871,	100787191	100787278	100787227	100787227	Frame_Shift_Del	A	-	p.A241fs
LIHC	TCGA-DD-A3A1-01	SEC24B	ENST00000265175.5,ENST00000504968.2,ENST00000399100.2	chr4	110448477:110448588:110451444:110451620:110452540:110452678,	110451445	110451620	110451588	110451588	Frame_Shift_Del	T	-	p.F1074fs
LIHC	TCGA-DD-A3A1-01	EGF	ENST00000265171.5,ENST00000509793.1	chr4	110909739:110909865:110914402:110914525:110915888:110916036,	110914403	110914525	110914422	110914422	Frame_Shift_Del	G	-	p.L918fs
LIHC	TCGA-DD-A3A1-01	DDX60	ENST00000393743.3	chr4	169190004:169190120:169193193:169193289:169194429:169194549,	169193194	169193289	169193231	169193231	Frame_Shift_Del	T	-	p.N878fs
LIHC	TCGA-DD-A3A1-01	PALLD	ENST00000512127.1	chr4	169552767:169553051:169589340:169589519:169602482:169602549,	169589341	169589519	169589385	169589385	Frame_Shift_Del	A	-	p.Q318fs
LIHC	TCGA-DD-A3A1-01	SH3RF1	ENST00000508685.1,ENST00000284637.9	chr4	170043250:170043417:170051196:170051307:170057468:170057771,	170051197	170051307	170051202	170051202	Frame_Shift_Del	G	-	p.L392fs
LIHC	TCGA-DD-A3A1-01	FAT1	ENST00000441802.2,ENST00000500085.2	chr4	187510225:187510374:187516842:187516980:187517693:187517995,	187516843	187516980	187516921	187516921	Frame_Shift_Del	G	-	p.Q4354fs
LIHC	TCGA-DD-A3A1-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14474120:14474206:14477002:14477072:14479369:14479459,	14477003	14477072	14477044	14477044	Frame_Shift_Del	A	-	p.E2042fs
LIHC	TCGA-DD-A3A1-01	TARS	ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000504698.1,ENST00000508361.1,ENST00000509731.1	chr5	33456138:33456171:33456253:33456332:33457361:33457508,	33456254	33456332	33456320	33456320	Frame_Shift_Del	A	-	p.L275fs
LIHC	TCGA-DD-A3A1-01	RNF180	ENST00000389100.4,ENST00000296615.6	chr5	63507891:63507987:63509384:63510344:63513187:63513223,	63509385	63510344	63509976	63509976	Frame_Shift_Del	A	-	p.K275fs
LIHC	TCGA-DD-A3A1-01	RNF180	ENST00000389100.4	chr5	63513187:63513223:63621012:63621238:63626107:63626233,	63621013	63621238	63621226	63621226	Frame_Shift_Del	T	-	p.F482fs
LIHC	TCGA-DD-A3A1-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715263	68715263	Frame_Shift_Del	C	-	p.V17fs
LIHC	TCGA-DD-A3A1-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2,ENST00000508157.3	chr5	70797388:70797480:70798425:70798618:70800447:70800578,	70798426	70798618	70798465	70798465	Frame_Shift_Del	A	-	p.L696fs
LIHC	TCGA-DD-A3A1-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2,ENST00000508157.3	chr5	70797388:70797480:70798425:70798618:70800447:70800578,	70798426	70798618	70798536	70798536	Frame_Shift_Del	A	-	p.E720fs
LIHC	TCGA-DD-A3A1-01	BTF3	ENST00000514360.1,ENST00000508901.1	chr5	72794281:72794624:72794958:72795027:72798312:72798426,72794345:72794383:72794958:72795027:72798312:72798426,	72794959	72795027	72794966	72794966	Frame_Shift_Del	A	-	p.E47fs
LIHC	TCGA-DD-A3A1-01	ARSB	ENST00000565165.1,ENST00000264914.4,ENST00000396151.3	chr5	78135178:78135249:78181406:78181650:78251117:78251325,	78181407	78181650	78181468	78181468	Frame_Shift_Del	C	-	p.A361fs
LIHC	TCGA-DD-A3A1-01	BHMT2	ENST00000255192.3,ENST00000519743.1	chr5	78375224:78375283:78376509:78376701:78378631:78378779,	78376510	78376701	78376664	78376664	Frame_Shift_Del	T	-	p.V138fs
LIHC	TCGA-DD-A3A1-01	PCSK1	ENST00000513085.1	chr5	95735656:95735890:95743926:95744027:95748021:95748194,	95743927	95744027	95744012	95744012	Frame_Shift_Del	G	-	p.H371fs
LIHC	TCGA-DD-A3A1-01	RIOK2	ENST00000508447.1,ENST00000283109.3	chr5	96503170:96503695:96504463:96504556:96506909:96507101,	96504464	96504556	96504475	96504475	Frame_Shift_Del	A	-	p.F287fs
LIHC	TCGA-DD-A3A1-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506389	118506389	Frame_Shift_Del	G	-	p.W1968fs
LIHC	TCGA-DD-A3A1-01	HSD17B4	ENST00000513628.1,ENST00000515235.2,ENST00000442060.3,ENST00000510025.1,ENST00000509514.1,ENST00000522415.1,ENST00000256216.6,ENST00000504811.1,ENST00000414835.2,ENST00000515320.1,ENST00000509606.1	chr5	118865595:118865675:118866960:118867099:118872117:118872245,	118866961	118867099	118867039	118867039	Frame_Shift_Del	A	-	p.K670fs
LIHC	TCGA-DD-A3A1-01	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121758562:121759434:121767663:121767777,121739487:121739560:121758562:121759434:121761046:121761226,	121758563	121759434	121759000	121759000	Frame_Shift_Del	A	-	p.K237fs
LIHC	TCGA-DD-A3A1-01	SLC22A5	ENST00000448810.1,ENST00000437841.2,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1	chr5	131721067:131721191:131722716:131722843:131724612:131724697,	131722717	131722843	131722821	131722821	Frame_Shift_Del	C	-	p.S310fs
LIHC	TCGA-DD-A3A1-01	SEPT8	ENST00000448933.1,ENST00000296873.7,ENST00000378706.1,ENST00000378721.4,ENST00000378699.2,ENST00000378701.1,ENST00000458488.2,ENST00000378719.2	chr5	132097192:132097318:132097491:132097588:132098175:132098337,	132097492	132097588	132097503	132097503	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-DD-A3A1-01	SEC24A	ENST00000398844.2	chr5	134033588:134033747:134039448:134039622:134041016:134041127,	134039449	134039622	134039582	134039582	Frame_Shift_Del	G	-	p.L800fs
LIHC	TCGA-DD-A3A1-01	KLHL3	ENST00000506873.1	chr5	136963985:136964126:136969725:136969854:136974641:136974839,	136969726	136969854	136969813	136969813	Frame_Shift_Del	G	-	p.Q423fs
LIHC	TCGA-DD-A3A1-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000507939.1,ENST00000360541.5,ENST00000572514.1	chr5	137849339:137849395:137853249:137853389:137854380:137854556,	137853250	137853389	137853380	137853380	Frame_Shift_Del	T	-	p.N58fs
LIHC	TCGA-DD-A3A1-01	SIL1	ENST00000503732.1,ENST00000509534.1,ENST00000394817.2,ENST00000265195.5	chr5	138356859:138356981:138362489:138362681:138378308:138378371,	138362490	138362681	138362514	138362514	Frame_Shift_Del	A	-	p.F207fs
LIHC	TCGA-DD-A3A1-01	SLC4A9	ENST00000507527.1,ENST00000506545.1,ENST00000432095.2,ENST00000230993.6,ENST00000506757.2	chr5	139747004:139747166:139747304:139747483:139748171:139748244,	139747305	139747483	139747450	139747450	Frame_Shift_Del	C	-	p.A798fs
LIHC	TCGA-DD-A3A1-01	TCERG1	ENST00000549332.1,ENST00000394421.2,ENST00000296702.5	chr5	145826908:145826971:145834618:145834844:145836745:145836898,	145834619	145834844	145834772	145834772	Frame_Shift_Del	T	-	p.P71fs
LIHC	TCGA-DD-A3A1-01	STK32A	ENST00000398523.3,ENST00000510953.1	chr5	146763003:146763068:146763452:146763517:146763937:146764009,	146763453	146763517	146763503	146763503	Frame_Shift_Del	C	-	p.T383fs
LIHC	TCGA-DD-A3A1-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630583	158630583	Frame_Shift_Del	G	-	p.L15fs
LIHC	TCGA-DD-A3A1-01	NUDCD2	ENST00000521797.1	chr5	162883934:162884011:162884567:162884616:162886867:162887061,162883993:162884086:162884567:162884616:162886332:162886842,	162884568	162884616	162884582	162884582	Frame_Shift_Del	C	-	p.G75fs
LIHC	TCGA-DD-A3A1-01	TENM2	ENST00000520394.1	chr5	167631376:167631626:167642044:167642277:167643772:167643927,	167642045	167642277	167642218	167642218	Frame_Shift_Del	A	-	p.D1219fs
LIHC	TCGA-DD-A3A1-01	RNF44	ENST00000274811.4,ENST00000537487.1,ENST00000513029.1	chr5	175957582:175957744:175957848:175958022:175958463:175958558,	175957849	175958022	175957968	175957968	Frame_Shift_Del	G	-	p.H174fs
LIHC	TCGA-DD-A3A1-01	DBN1	ENST00000393565.1	chr5	176886098:176886269:176886603:176886741:176887432:176887553,	176886604	176886741	176886624	176886624	Frame_Shift_Del	T	-	p.N358fs
LIHC	TCGA-DD-A3A1-01	COL23A1	ENST00000390654.3	chr5	177673254:177673308:177673391:177673454:177674526:177674553,	177673392	177673454	177673426	177673426	Frame_Shift_Del	C	-	p.G442fs
LIHC	TCGA-DD-A3A1-01	ADAMTS2	ENST00000251582.7	chr5	178551973:178552181:178552998:178553131:178554959:178555119,	178552999	178553131	178553046	178553046	Frame_Shift_Del	G	-	p.P901fs
LIHC	TCGA-DD-A3A1-01	VARS	ENST00000375663.3	chr6	31760533:31760672:31760762:31760897:31762607:31762963,	31760763	31760897	31760814	31760814	Frame_Shift_Del	G	-	p.P157fs
LIHC	TCGA-DD-A3A1-01	LSM2	ENST00000470086.1	chr6	31765172:31765659:31773851:31773919:31774531:31774594,31766262:31766284:31773851:31773919:31774531:31774594,31765766:31765826:31773851:31773919:31774531:31774594,	31773852	31773919	31773864	31773864	Frame_Shift_Del	T	-	p.K20fs
LIHC	TCGA-DD-A3A1-01	PTK7	ENST00000470019.1	chr6	43097464:43097567:43098248:43098399:43099753:43099902,	43098249	43098399	43098380	43098380	Frame_Shift_Del	C	-	p.P265fs
LIHC	TCGA-DD-A3A1-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71235105	71235105	Frame_Shift_Del	A	-	p.E773fs
LIHC	TCGA-DD-A3A1-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71235105	71235105	Frame_Shift_Del	A	-	p.E773fs
LIHC	TCGA-DD-A3A1-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75833663:75833810:75833970:75834087:75834842:75834989,	75833971	75834087	75833983	75833983	Frame_Shift_Del	T	-	p.S2238fs
LIHC	TCGA-DD-A3A1-01	BCKDHB	ENST00000356489.5,ENST00000545529.1,ENST00000320393.6	chr6	80912818:80912929:80982851:80982938:81053380:81053529,	80982852	80982938	80982861	80982861	Frame_Shift_Del	A	-	p.K321fs
LIHC	TCGA-DD-A3A1-01	AKAP7	ENST00000368123.4,ENST00000431975.2	chr6	131520600:131520713:131540800:131540948:131602669:131603083,	131540801	131540948	131540910	131540910	Frame_Shift_Del	G	-	p.S271fs
LIHC	TCGA-DD-A3A1-01	AIG1	ENST00000275235.4,ENST00000458219.1,ENST00000357847.4,ENST00000367601.4	chr6	143382083:143382203:143486218:143486320:143605246:143605362,143457971:143458127:143486218:143486320:143605246:143605362,	143486219	143486320	143486296	143486296	Frame_Shift_Del	C	-	p.I125fs
LIHC	TCGA-DD-A3A1-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152563374:152563575:152565671:152565791:152570295:152570397,	152565672	152565791	152565686	152565686	Frame_Shift_Del	G	-	p.L6560fs
LIHC	TCGA-DD-A3A1-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000484458.2,ENST00000389900.4	chr7	5692043:5692141:5751391:5751470:5752345:5752494,	5751392	5751470	5751405	5751405	Frame_Shift_Del	G	-	p.P626fs
LIHC	TCGA-DD-A3A1-01	TWISTNB	ENST00000222567.5	chr7	19738187:19738350:19739694:19739903:19744401:19744543,	19739695	19739903	19739763	19739763	Frame_Shift_Del	A	-	p.F179fs
LIHC	TCGA-DD-A3A1-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24843933:24844056:24846394:24846521:24849425:24849570,	24846395	24846521	24846461	24846461	Frame_Shift_Del	T	-	p.N793fs
LIHC	TCGA-DD-A3A1-01	NUDCD3	ENST00000472246.1,ENST00000355451.7	chr7	44431983:44432084:44444038:44444182:44467169:44467240,	44444039	44444182	44444130	44444130	Frame_Shift_Del	T	-	p.N232fs
LIHC	TCGA-DD-A3A1-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000439616.2,ENST00000543843.1,ENST00000447398.1,ENST00000449767.1	chr7	44715568:44715748:44721318:44721447:44733423:44733603,	44721319	44721447	44721340	44721340	Frame_Shift_Del	G	-	p.G410fs
LIHC	TCGA-DD-A3A1-01	LRGUK	ENST00000285928.2	chr7	133906530:133906670:133932307:133932396:133933702:133933828,	133932308	133932396	133932370	133932370	Frame_Shift_Del	C	-	p.R682fs
LIHC	TCGA-DD-A3A1-01	AKR1D1	ENST00000468877.2,ENST00000432161.1,ENST00000242375.3	chr7	137782611:137782689:137790052:137790175:137791353:137791463,	137790053	137790175	137790106	137790106	Frame_Shift_Del	T	-	p.N170fs
LIHC	TCGA-DD-A3A1-01	SMARCD3	ENST00000262188.8,ENST00000469154.1,ENST00000356800.2,ENST00000392811.2	chr7	150936709:150936832:150937197:150937333:150937510:150937608,	150937198	150937333	150937261	150937261	Frame_Shift_Del	C	-	p.G357fs
LIHC	TCGA-DD-A3A1-01	PRKAG2	ENST00000392801.2,ENST00000418337.2,ENST00000492843.1,ENST00000433631.2,ENST00000287878.4	chr7	151262805:151262971:151265801:151265928:151267256:151267311,	151265802	151265928	151265834	151265834	Frame_Shift_Del	G	-	p.H401fs
LIHC	TCGA-DD-A3A1-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151836759:151836876:151841797:151841966:151842249:151842380,151836759:151836876:151841797:151841966:151842237:151842380,	151841798	151841966	151841955	151841955	Frame_Shift_Del	A	-	p.L4786fs
LIHC	TCGA-DD-A3A1-01	TNKS	ENST00000518281.1,ENST00000310430.6	chr8	9592500:9592594:9592886:9592996:9605533:9605722,	9592887	9592996	9592951	9592951	Frame_Shift_Del	G	-	p.Q866fs
LIHC	TCGA-DD-A3A1-01	NEIL2	ENST00000436750.3,ENST00000284503.6,ENST00000455213.2	chr8	11627218:11627300:11637106:11637459:11640711:11640908,11629019:11629094:11637106:11637459:11640711:11640908,	11637107	11637459	11637236	11637236	Frame_Shift_Del	G	-	p.G90fs
LIHC	TCGA-DD-A3A1-01	CTSB	ENST00000531089.1,ENST00000533455.1,ENST00000353047.6,ENST00000534510.1,ENST00000453527.2,ENST00000530296.1,ENST00000534636.1,ENST00000530640.2,ENST00000345125.3,ENST00000434271.1,ENST00000533572.1	chr8	11705612:11705661:11706554:11706673:11708374:11708489,	11706555	11706673	11706559	11706559	Frame_Shift_Del	C	-	p.D148fs
LIHC	TCGA-DD-A3A1-01	FAM86B2	ENST00000262365.4,ENST00000351291.4,ENST00000527331.1	chr8	12285242:12285315:12286141:12286407:12286489:12286623,	12286142	12286407	12286340	12286340	Frame_Shift_Del	G	-	p.R182fs
LIHC	TCGA-DD-A3A1-01	MSR1	ENST00000445506.2,ENST00000262101.5	chr8	15967593:15967727:15977926:15978115:16001066:16001120,	15977927	15978115	15978066	15978066	Frame_Shift_Del	C	-	p.G361fs
LIHC	TCGA-DD-A3A1-01	DMTN	ENST00000265800.5,ENST00000517600.1,ENST00000523266.1	chr8	21938128:21938136:21938315:21938381:21938623:21938704,	21938316	21938381	21938332	21938332	Frame_Shift_Del	G	-	p.R325fs
LIHC	TCGA-DD-A3A1-01	CLU	ENST00000522299.1,ENST00000560366.1,ENST00000519472.1,ENST00000523589.1,ENST00000518050.1	chr8	27466585:27466603:27467991:27468117:27472171:27472198,	27467992	27468117	27468115	27468115	Frame_Shift_Del	C	-	p.A44fs
LIHC	TCGA-DD-A3A1-01	SCARA5	ENST00000524352.1,ENST00000301906.4,ENST00000354914.3,ENST00000518030.1	chr8	27764664:27764763:27767179:27767260:27779087:27779762,	27767180	27767260	27767231	27767231	Frame_Shift_Del	C	-	p.D316fs
LIHC	TCGA-DD-A3A1-01	FBXO16	ENST00000346498.2	chr8	28286159:28286253:28304687:28304790:28309760:28309993,	28304688	28304790	28304727	28304727	Frame_Shift_Del	T	-	p.K268fs
LIHC	TCGA-DD-A3A1-01	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28573612	28573612	Frame_Shift_Del	G	-	p.A12fs
LIHC	TCGA-DD-A3A1-01	HOOK3	ENST00000527306.1,ENST00000307602.4	chr8	42837769:42837839:42841797:42841938:42852692:42852780,	42841798	42841938	42841809	42841809	Frame_Shift_Del	T	-	p.I468fs
LIHC	TCGA-DD-A3A1-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54684548:54684727:54708206:54708399:54714358:54714428,	54708207	54708399	54708341	54708341	Frame_Shift_Del	A	-	p.S228fs
LIHC	TCGA-DD-A3A1-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56698836	56698836	Frame_Shift_Del	A	-	p.K128fs
LIHC	TCGA-DD-A3A1-01	TRAM1	ENST00000262213.2,ENST00000520700.1,ENST00000521425.1,ENST00000536748.1	chr8	71508497:71508556:71510129:71510246:71510368:71510487,	71510130	71510246	71510211	71510211	Frame_Shift_Del	T	-	p.K29fs
LIHC	TCGA-DD-A3A1-01	EYA1	ENST00000303824.7,ENST00000496494.1,ENST00000465115.1,ENST00000388741.2,ENST00000388740.3,ENST00000388743.2,ENST00000388742.4,ENST00000340726.3	chr8	72129199:72129258:72156837:72156927:72181974:72182058,	72156838	72156927	72156906	72156906	Frame_Shift_Del	G	-	p.L358fs
LIHC	TCGA-DD-A3A1-01	EYA1	ENST00000303824.7,ENST00000496494.1,ENST00000465115.1,ENST00000419131.1,ENST00000388743.2,ENST00000340726.3	chr8	72246331:72246409:72267016:72267144:72268696:72268721,	72267017	72267144	72267072	72267072	Frame_Shift_Del	G	-	p.P23fs
LIHC	TCGA-DD-A3A1-01	FABP4	ENST00000522659.1	chr8	82391648:82391750:82392660:82392833:82395333:82395468,	82392661	82392833	82392793	82392793	Frame_Shift_Del	T	-	p.K38fs
LIHC	TCGA-DD-A3A1-01	RUNX1T1	ENST00000519847.1,ENST00000518992.1,ENST00000521375.1	chr8	93029453:93029659:93088192:93088365:93107255:93107463,93074851:93074937:93088192:93088365:93115084:93115135,93074773:93074937:93088192:93088365:93107255:93107463,93029534:93029591:93088192:93088365:93107255:93107399,	93088193	93088365	93088256	93088256	Frame_Shift_Del	A	-	p.W9fs
LIHC	TCGA-DD-A3A1-01	CPQ	ENST00000220763.5,ENST00000522617.1	chr8	98041696:98041722:98078236:98078438:98155247:98155416,	98078237	98078438	98078319	98078319	Frame_Shift_Del	A	-	p.E379fs
LIHC	TCGA-DD-A3A1-01	RNF19A	ENST00000523644.1	chr8	101271391:101271474:101272081:101272225:101273769:101273983,101271391:101271474:101272081:101272225:101276261:101276308,	101272082	101272225	101272126	101272126	Frame_Shift_Del	T	-	p.K594fs
LIHC	TCGA-DD-A3A1-01	SNX31	ENST00000520352.1,ENST00000311812.2,ENST00000520661.1	chr8	101629871:101629958:101642554:101642619:101648124:101648239,	101642555	101642619	101642607	101642607	Frame_Shift_Del	G	-	p.P90fs
LIHC	TCGA-DD-A3A1-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663811	103663811	Frame_Shift_Del	G	-	p.P239fs
LIHC	TCGA-DD-A3A1-01	TRPS1	ENST00000520276.1,ENST00000519674.1,ENST00000220888.5,ENST00000395715.3	chr8	116599227:116599831:116616099:116617229:116631358:116631936,	116616100	116617229	116616810	116616810	Frame_Shift_Del	A	-	p.L462fs
LIHC	TCGA-DD-A3A1-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116632272	116632272	Frame_Shift_Del	T	-	p.K18fs
LIHC	TCGA-DD-A3A1-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000440844.1	chr8	121357684:121357802:121379409:121379487:121381568:121381724,	121379410	121379487	121379449	121379449	Frame_Shift_Del	T	-	p.V1706fs
LIHC	TCGA-DD-A3A1-01	ASAP1	ENST00000519483.1,ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131066986:131067051:131070199:131070322:131072824:131073315,	131070200	131070322	131070315	131070315	Frame_Shift_Del	T	-	p.N1067fs
LIHC	TCGA-DD-A3A1-01	PHF20L1	ENST00000485595.1,ENST00000337920.4	chr8	133787874:133787891:133790041:133790157:133806655:133806827,	133790042	133790157	133790081	133790081	Frame_Shift_Del	A	-	p.K4fs
LIHC	TCGA-DD-A3A1-01	PHF20L1	ENST00000220847.7,ENST00000395376.1,ENST00000315808.10,ENST00000395379.1,ENST00000361997.5,ENST00000395386.2	chr8	133787874:133787891:133790037:133790157:133806655:133806827,	133790038	133790157	133790081	133790081	Frame_Shift_Del	A	-	p.K4fs
LIHC	TCGA-DD-A3A1-01	PTK2	ENST00000340930.3,ENST00000395218.2	chr8	141684396:141684503:141685528:141685598:141696730:141696793,	141685529	141685598	141685538	141685538	Frame_Shift_Del	C	-	p.A875fs
LIHC	TCGA-DD-A3A1-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144998364	144998364	Frame_Shift_Del	C	-	p.G2048fs
LIHC	TCGA-DD-A3A1-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057682	145057682	Frame_Shift_Del	G	-	p.P692fs
LIHC	TCGA-DD-A3A1-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057682	145057682	Frame_Shift_Del	G	-	p.P692fs
LIHC	TCGA-DD-A3A1-01	GPT	ENST00000528431.1,ENST00000394955.2	chr8	145731614:145731789:145731883:145732039:145732113:145732226,	145731884	145732039	145731956	145731956	Frame_Shift_Del	G	-	p.G402fs
LIHC	TCGA-DD-A3A1-01	RECQL4	ENST00000532237.1,ENST00000532269.1,ENST00000428558.2,ENST00000532846.2,ENST00000534626.2	chr8	145738954:145739096:145739311:145739491:145739572:145739746,	145739312	145739491	145739364	145739364	Frame_Shift_Del	G	-	p.P669fs
LIHC	TCGA-DD-A3A1-01	GLIS3	ENST00000324333.10,ENST00000381971.3,ENST00000461870.1	chr9	3827697:3828408:3829309:3829492:3856008:3856184,	3829310	3829492	3829487	3829487	Frame_Shift_Del	A	-	p.Y672fs
LIHC	TCGA-DD-A3A1-01	IL33	ENST00000456383.2	chr9	6215808:6215852:6241683:6241785:6250473:6250599,	6241684	6241785	6241739	6241739	Frame_Shift_Del	A	-	p.A15fs
LIHC	TCGA-DD-A3A1-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436118	16436118	Frame_Shift_Del	A	-	p.S692fs
LIHC	TCGA-DD-A3A1-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27157992	27157992	Frame_Shift_Del	G	-	p.L72fs
LIHC	TCGA-DD-A3A1-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77418709:77418802:77422949:77423090:77425730:77425784,	77422950	77423090	77423078	77423078	Frame_Shift_Del	A	-	p.S504fs
LIHC	TCGA-DD-A3A1-01	NMRK1	ENST00000494066.1	chr9	77681672:77681756:77683911:77684958:77692074:77692123,	77683912	77684958	77683918	77683918	Frame_Shift_Del	C	-	p.E168fs
LIHC	TCGA-DD-A3A1-01	CEP78	ENST00000536374.1,ENST00000424347.2,ENST00000415759.2,ENST00000376598.2,ENST00000376597.4,ENST00000277082.5	chr9	80858377:80858552:80861584:80861698:80863206:80863271,	80861585	80861698	80861645	80861645	Frame_Shift_Del	T	-	p.L280fs
LIHC	TCGA-DD-A3A1-01	CEP78	ENST00000459817.2	chr9	80869758:80869880:80879065:80879232:80880287:80880317,	80879066	80879232	80879195	80879195	Frame_Shift_Del	A	-	p.K530fs
LIHC	TCGA-DD-A3A1-01	NAA35	ENST00000361671.5	chr9	88624779:88624846:88627960:88628059:88628633:88628709,	88627961	88628059	88628035	88628035	Frame_Shift_Del	G	-	p.E456fs
LIHC	TCGA-DD-A3A1-01	CDK20	ENST00000375871.4	chr9	90581796:90582574:90584108:90584264:90585690:90585812,	90584109	90584264	90584204	90584204	Frame_Shift_Del	G	-	p.L229fs
LIHC	TCGA-DD-A3A1-01	SECISBP2	ENST00000534113.2,ENST00000339901.4,ENST00000375807.3	chr9	91947831:91947901:91949436:91949645:91953372:91953425,	91949437	91949645	91949500	91949500	Frame_Shift_Del	C	-	p.A315fs
LIHC	TCGA-DD-A3A1-01	ABCA1	ENST00000423487.2,ENST00000374736.3,ENST00000374733.1	chr9	107645319:107645438:107646707:107646849:107651382:107651476,	107646708	107646849	107646802	107646802	Frame_Shift_Del	C	-	p.V70fs
LIHC	TCGA-DD-A3A1-01	RABEPK	ENST00000373544.1,ENST00000394124.4	chr9	127975648:127975801:127982605:127982676:127982817:127982937,	127982606	127982676	127982611	127982611	Frame_Shift_Del	A	-	p.K124fs
LIHC	TCGA-DD-A3A1-01	MVB12B	ENST00000361171.3,ENST00000436593.3	chr9	129154344:129154474:129157853:129157976:129184132:129184227,	129157854	129157976	129157961	129157961	Frame_Shift_Del	C	-	p.A216fs
LIHC	TCGA-DD-A3A1-01	SLC2A8	ENST00000477027.1,ENST00000430147.1	chr9	130167096:130167270:130167698:130167844:130169390:130169570,130167096:130167270:130167698:130167844:130169714:130169809,	130167699	130167844	130167724	130167724	Frame_Shift_Del	C	-	p.I392fs
LIHC	TCGA-DD-A3A1-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131670266	131670266	Frame_Shift_Del	T	-	p.F275fs
LIHC	TCGA-DD-A3A1-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131670557	131670557	Frame_Shift_Del	T	-	p.F372fs
LIHC	TCGA-DD-A3A1-01	ASB6	ENST00000277458.4	chr9	132401680:132401787:132402819:132403001:132404165:132404403,	132402820	132403001	132402912	132402912	Frame_Shift_Del	C	-	p.G68fs
LIHC	TCGA-DD-A3A1-01	LAMC3	ENST00000355452.5	chr9	133957445:133957548:133960994:133961110:133962862:133963009,	133960995	133961110	133961096	133961096	Frame_Shift_Del	A	-	p.K1406fs
LIHC	TCGA-DD-A3A1-01	LAMC3	ENST00000361069.4	chr9	133957445:133957548:133960910:133961110:133962862:133963009,	133960911	133961110	133961096	133961096	Frame_Shift_Del	A	-	p.K1406fs
LIHC	TCGA-DD-A3A1-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135202815	135202815	Frame_Shift_Del	T	-	p.E1390fs
LIHC	TCGA-DD-A3A1-01	REXO4	ENST00000371942.3,ENST00000494045.1	chr9	136276123:136276193:136277418:136277612:136277897:136278041,	136277419	136277612	136277557	136277557	Frame_Shift_Del	C	-	p.E259fs
LIHC	TCGA-DD-A3A1-01	MRPS2	ENST00000241600.5,ENST00000485333.1,ENST00000488610.1,ENST00000371785.1	chr9	138392560:138392599:138392843:138392969:138393689:138393819,	138392844	138392969	138392853	138392853	Frame_Shift_Del	C	-	p.A18fs
LIHC	TCGA-DD-A3A1-01	MRPS2	ENST00000462948.1	chr9	138392560:138392599:138392843:138393172:138393689:138393819,	138392844	138393172	138392853	138392853	Frame_Shift_Del	C	-	p.A18fs
LIHC	TCGA-DD-A3A1-01	EHMT1	ENST00000495657.1	chr9	140611546:140611634:140622800:140622981:140637822:140637980,140611546:140611634:140622800:140622981:140637843:140637980,	140622801	140622981	140622922	140622922	Frame_Shift_Del	C	-	p.S255fs
LIHC	TCGA-DD-A3A1-01	CELF2	ENST00000417956.2,ENST00000416382.2,ENST00000427450.1,ENST00000450189.1,ENST00000399850.3,ENST00000315874.4,ENST00000542579.1,ENST00000608830.1	chr10	11367798:11367942:11370888:11371060:11372418:11372602,	11370889	11371060	11371005	11371005	Frame_Shift_Del	A	-	p.K506fs
LIHC	TCGA-DD-A3A1-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324581	27324581	Frame_Shift_Del	T	-	p.N933fs
LIHC	TCGA-DD-A3A1-01	FRMPD2	ENST00000305531.3,ENST00000407470.4	chr10	49450203:49450395:49457063:49457221:49459608:49459654,	49457064	49457221	49457098	49457098	Frame_Shift_Del	C	-	p.G92fs
LIHC	TCGA-DD-A3A1-01	UNC5B	ENST00000373192.4	chr10	73048714:73048747:73050671:73050866:73051188:73051578,73048324:73048489:73050671:73050866:73051188:73051578,	73050672	73050866	73050754	73050754	Frame_Shift_Del	G	-	p.V394fs
LIHC	TCGA-DD-A3A1-01	ALDH18A1	ENST00000371221.3,ENST00000371224.2	chr10	97373722:97373918:97376233:97376371:97380787:97381008,	97376234	97376371	97376245	97376245	Frame_Shift_Del	C	-	p.A532fs
LIHC	TCGA-DD-A3A1-01	SORCS3	ENST00000369701.3	chr10	106865154:106865273:106899154:106899244:106907374:106907554,	106899155	106899244	106899196	106899196	Frame_Shift_Del	A	-	p.R419fs
LIHC	TCGA-DD-A3A1-01	FGFR2	ENST00000478859.1,ENST00000457416.2,ENST00000356226.4,ENST00000357555.5,ENST00000351936.6,ENST00000429361.1,ENST00000369061.4,ENST00000358487.5,ENST00000360144.3,ENST00000369060.4,ENST00000369058.3,ENST00000369059.1,ENST00000604236.1,ENST00000346997.2,ENST00000336553.6,ENST00000369056.1	chr10	123256045:123256236:123258008:123258119:123260339:123260461,	123258009	123258119	123258052	123258052	Frame_Shift_Del	T	-	p.K543fs
LIHC	TCGA-DD-A3A1-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123659380:123659509:123661905:123662135:123670420:123670666,123658355:123658484:123661905:123662135:123670420:123670666,	123661906	123662135	123662088	123662088	Frame_Shift_Del	T	-	p.I211fs
LIHC	TCGA-DD-A3A1-01	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	280129	280129	Frame_Shift_Del	G	-	p.R132fs
LIHC	TCGA-DD-A3A1-01	TOLLIP	ENST00000527886.1,ENST00000542915.1,ENST00000263646.7,ENST00000530541.1,ENST00000530506.1,ENST00000317204.6	chr11	1307231:1307322:1309853:1310006:1311456:1311639,	1309854	1310006	1309886	1309886	Frame_Shift_Del	C	-	p.E94fs
LIHC	TCGA-DD-A3A1-01	TPP1	ENST00000533371.1,ENST00000299427.6	chr11	6637235:6637305:6637545:6637734:6637891:6638090,	6637546	6637734	6637603	6637603	Frame_Shift_Del	C	-	p.V97fs
LIHC	TCGA-DD-A3A1-01	PSMA1	ENST00000418988.2,ENST00000396394.2,ENST00000531023.1,ENST00000396393.1,ENST00000530457.1	chr11	14532417:14532497:14535115:14535245:14535362:14536037,	14535116	14535245	14535235	14535235	Frame_Shift_Del	G	-	p.P117fs
LIHC	TCGA-DD-A3A1-01	ZDHHC5	ENST00000287169.3	chr11	57440615:57440666:57449893:57450015:57455979:57456137,	57449894	57450015	57449988	57449988	Frame_Shift_Del	T	-	p.F67fs
LIHC	TCGA-DD-A3A1-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000301764.7	chr11	61093082:61093180:61094250:61094365:61099014:61099163,61093082:61093180:61094250:61094365:61096834:61097056,	61094251	61094365	61094341	61094341	Frame_Shift_Del	T	-	p.T192fs
LIHC	TCGA-DD-A3A1-01	MACROD1	ENST00000543422.1,ENST00000255681.6	chr11	63766854:63766876:63767001:63767032:63767113:63767235,	63767002	63767032	63767024	63767024	Frame_Shift_Del	G	-	p.P265fs
LIHC	TCGA-DD-A3A1-01	CNIH2	ENST00000528852.1,ENST00000530519.1,ENST00000531936.1,ENST00000528063.1,ENST00000311445.6	chr11	66050203:66050251:66050505:66050618:66050718:66050862,	66050506	66050618	66050535	66050535	Frame_Shift_Del	C	-	p.G76fs
LIHC	TCGA-DD-A3A1-01	AIP	ENST00000279146.3	chr11	67254476:67254656:67256737:67256926:67257508:67257685,	67256738	67256926	67256890	67256890	Frame_Shift_Del	C	-	p.N144fs
LIHC	TCGA-DD-A3A1-01	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67811755:67811811:67812424:67812569:67814899:67815039,	67812425	67812569	67812476	67812476	Frame_Shift_Del	C	-	p.P359fs
LIHC	TCGA-DD-A3A1-01	TPCN2	ENST00000294309.3,ENST00000542467.1,ENST00000535009.1	chr11	68839390:68839491:68840094:68840176:68840382:68840469,	68840095	68840176	68840108	68840108	Frame_Shift_Del	C	-	p.P359fs
LIHC	TCGA-DD-A3A1-01	EED	ENST00000263360.6,ENST00000327320.4,ENST00000525244.1,ENST00000533228.1,ENST00000351625.6	chr11	85975213:85975305:85977124:85977258:85979497:85979572,	85977125	85977258	85977151	85977151	Frame_Shift_Del	A	-	p.I251fs
LIHC	TCGA-DD-A3A1-01	CASP4	ENST00000533730.1,ENST00000393150.3,ENST00000444739.2	chr11	104817809:104817919:104819259:104819403:104820269:104820504,	104819260	104819403	104819383	104819383	Frame_Shift_Del	C	-	p.V268fs
LIHC	TCGA-DD-A3A1-01	CASP4	ENST00000533730.1	chr11	104821754:104821825:104822622:104822790:104825473:104825725,	104822623	104822790	104822654	104822654	Frame_Shift_Del	A	-	p.F114fs
LIHC	TCGA-DD-A3A1-01	CASP4	ENST00000417440.2,ENST00000393150.3,ENST00000524843.1,ENST00000444739.2	chr11	104821754:104821825:104822622:104822732:104825473:104825725,	104822623	104822732	104822654	104822654	Frame_Shift_Del	A	-	p.F114fs
LIHC	TCGA-DD-A3A1-01	ARCN1	ENST00000392859.3,ENST00000264028.4,ENST00000359415.4	chr11	118461055:118461221:118463423:118463571:118464304:118464413,	118463424	118463571	118463517	118463517	Frame_Shift_Del	G	-	p.G401fs
LIHC	TCGA-DD-A3A1-01	FEZ1	ENST00000278919.3,ENST00000533294.1	chr11	125330393:125330562:125333379:125333466:125338944:125339052,125330393:125330562:125333379:125333466:125351429:125351493,	125333380	125333466	125333394	125333394	Frame_Shift_Del	G	-	p.L162fs
LIHC	TCGA-DD-A3A1-01	DDX23	ENST00000549795.1,ENST00000308025.3	chr12	49225860:49225969:49226204:49226356:49227059:49227128,	49226205	49226356	49226254	49226254	Frame_Shift_Del	G	-	p.H636fs
LIHC	TCGA-DD-A3A1-01	PPP1R1A	ENST00000547431.1	chr12	54974727:54974834:54976994:54977032:54978043:54978100,	54976995	54977032	54977010	54977010	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-DD-A3A1-01	SLC39A5	ENST00000454355.2,ENST00000436633.1,ENST00000266980.4,ENST00000481103.1	chr12	56625249:56625345:56626472:56626656:56628607:56628770,	56626473	56626656	56626559	56626559	Frame_Shift_Del	C	-	p.A125fs
LIHC	TCGA-DD-A3A1-01	MSRB3	ENST00000541897.1,ENST00000355192.3,ENST00000535143.1,ENST00000535239.1,ENST00000535664.1,ENST00000308259.5	chr12	65762777:65762806:65847507:65847605:65856934:65856972,	65847508	65847605	65847573	65847573	Frame_Shift_Del	G	-	p.G120fs
LIHC	TCGA-DD-A3A1-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603722	95603722	Frame_Shift_Del	A	-	p.F446fs
LIHC	TCGA-DD-A3A1-01	VEZT	ENST00000546445.1,ENST00000546557.1	chr12	95650929:95651015:95656681:95656857:95660132:95660160,95645742:95645847:95656681:95656857:95660132:95660160,95650325:95650398:95656681:95656857:95660132:95660160,	95656682	95656857	95656790	95656790	Frame_Shift_Del	G	-	p.G123fs
LIHC	TCGA-DD-A3A1-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904882	100904882	Frame_Shift_Del	G	-	p.G136fs
LIHC	TCGA-DD-A3A1-01	HCFC2	ENST00000229330.4,ENST00000544223.2	chr12	104461724:104461885:104473222:104473431:104474523:104474608,	104473223	104473431	104473296	104473296	Frame_Shift_Del	A	-	p.K183fs
LIHC	TCGA-DD-A3A1-01	SLC41A2	ENST00000258538.3	chr12	105280070:105280217:105282810:105282955:105289051:105289123,	105282811	105282955	105282932	105282932	Frame_Shift_Del	A	-	p.F253fs
LIHC	TCGA-DD-A3A1-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109634812:109634958:109637206:109637357:109639371:109639506,	109637207	109637357	109637241	109637241	Frame_Shift_Del	T	-	p.F888fs
LIHC	TCGA-DD-A3A1-01	ACAD10	ENST00000455480.2	chr12	112147329:112147488:112150301:112150461:112153624:112153766,112148076:112148169:112150301:112150461:112153624:112153766,	112150302	112150461	112150389	112150389	Frame_Shift_Del	A	-	p.K292fs
LIHC	TCGA-DD-A3A1-01	PTPN11	ENST00000351677.2,ENST00000392597.1	chr12	112888124:112888316:112890998:112891191:112892367:112892484,	112890999	112891191	112891112	112891112	Frame_Shift_Del	T	-	p.L149fs
LIHC	TCGA-DD-A3A1-01	FBXO21	ENST00000330622.5,ENST00000427718.2	chr12	117604702:117604882:117610275:117610412:117612009:117612146,	117610276	117610412	117610363	117610363	Frame_Shift_Del	A	-	p.L309fs
LIHC	TCGA-DD-A3A1-01	VSIG10	ENST00000359236.5	chr12	118511503:118511797:118517150:118517411:118519931:118520234,	118517151	118517411	118517235	118517235	Frame_Shift_Del	G	-	p.Q281fs
LIHC	TCGA-DD-A3A1-01	RNF34	ENST00000392464.2,ENST00000361234.5,ENST00000392465.3	chr12	121853961:121854180:121855306:121855714:121858044:121858137,	121855307	121855714	121855328	121855328	Frame_Shift_Del	A	-	p.K83fs
LIHC	TCGA-DD-A3A1-01	ZCCHC8	ENST00000540586.1,ENST00000543897.1	chr12	122967181:122967242:122967825:122968110:122973932:122974010,	122967826	122968110	122968027	122968027	Frame_Shift_Del	G	-	p.S195fs
LIHC	TCGA-DD-A3A1-01	ZCCHC8	ENST00000336229.4	chr12	122967825:122967891:122968006:122968110:122973932:122974010,	122968007	122968110	122968027	122968027	Frame_Shift_Del	G	-	p.S195fs
LIHC	TCGA-DD-A3A1-01	HIP1R	ENST00000535012.1,ENST00000536617.1,ENST00000253083.4	chr12	123345677:123345739:123345854:123346061:123346252:123346631,	123345855	123346061	123345988	123345988	Frame_Shift_Del	C	-	p.A1029fs
LIHC	TCGA-DD-A3A1-01	ABCB9	ENST00000541983.1,ENST00000542678.1,ENST00000442833.2,ENST00000392439.3,ENST00000344275.7,ENST00000542448.1,ENST00000538895.1,ENST00000442028.2,ENST00000280560.8,ENST00000545373.1	chr12	123424753:123424831:123425353:123425542:123430571:123430769,123424753:123424831:123425353:123425542:123428937:123429066,	123425354	123425542	123425432	123425432	Frame_Shift_Del	G	-	p.P497fs
LIHC	TCGA-DD-A3A1-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000536195.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1,ENST00000458234.1	chr12	124839382:124839485:124839977:124840117:124841187:124841231,	124839978	124840117	124840111	124840111	Frame_Shift_Del	G	-	p.P1090fs
LIHC	TCGA-DD-A3A1-01	SCARB1	ENST00000546215.1,ENST00000415380.2,ENST00000538291.1,ENST00000544327.1,ENST00000535005.1,ENST00000540495.1,ENST00000261693.6,ENST00000339570.5,ENST00000376788.1,ENST00000541205.1	chr12	125279740:125279814:125284669:125284788:125292306:125292473,	125284670	125284788	125284675	125284675	Frame_Shift_Del	G	-	p.H375fs
LIHC	TCGA-DD-A3A1-01	FBRSL1	ENST00000261673.6,ENST00000434748.2	chr12	133084741:133084936:133102319:133102409:133104538:133104574,	133102320	133102409	133102393	133102393	Frame_Shift_Del	G	-	p.R188fs
LIHC	TCGA-DD-A3A1-01	PAN3	ENST00000399613.1,ENST00000380958.3	chr13	28713169:28713224:28748408:28748530:28750629:28750696,	28748409	28748530	28748414	28748414	Frame_Shift_Del	G	-	p.G146fs
LIHC	TCGA-DD-A3A1-01	N4BP2L2	ENST00000505213.1,ENST00000267068.3	chr13	33101600:33101669:33109905:33111164:33112754:33112821,	33109906	33111164	33110539	33110539	Frame_Shift_Del	C	-	p.G209fs
LIHC	TCGA-DD-A3A1-01	DCLK1	ENST00000360631.3,ENST00000255448.4	chr13	36413228:36413313:36428635:36428730:36445360:36445477,	36428636	36428730	36428718	36428718	Frame_Shift_Del	G	-	p.P318fs
LIHC	TCGA-DD-A3A1-01	VWA8	ENST00000379310.3	chr13	42266997:42267108:42273206:42273406:42275527:42275666,	42273207	42273406	42273232	42273232	Frame_Shift_Del	C	-	p.G1180fs
LIHC	TCGA-DD-A3A1-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52972226	52972226	Frame_Shift_Del	C	-	p.G54fs
LIHC	TCGA-DD-A3A1-01	ARHGEF7	ENST00000426768.2,ENST00000375737.5,ENST00000375739.2,ENST00000375741.2,ENST00000375723.1,ENST00000466143.1,ENST00000449979.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5,ENST00000467053.1	chr13	111857635:111857720:111862218:111862349:111870025:111870147,	111862219	111862349	111862319	111862319	Frame_Shift_Del	A	-	p.S167fs
LIHC	TCGA-DD-A3A1-01	ARHGEF7	ENST00000478679.1,ENST00000375737.5,ENST00000375739.2,ENST00000483189.1,ENST00000370623.3,ENST00000375741.2,ENST00000375723.1,ENST00000466143.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5	chr13	111919894:111920017:111926160:111926299:111927077:111927137,	111926161	111926299	111926177	111926177	Frame_Shift_Del	T	-	p.F385fs
LIHC	TCGA-DD-A3A1-01	TUBGCP3	ENST00000375669.3,ENST00000464139.1	chr13	113219424:113219492:113223465:113223573:113242218:113242439,	113223466	113223573	113223562	113223562	Frame_Shift_Del	G	-	p.Q31fs
LIHC	TCGA-DD-A3A1-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472204	92472204	Frame_Shift_Del	C	-	p.E706fs
LIHC	TCGA-DD-A3A1-01	TDRD9	ENST00000409874.4	chr14	104493015:104493276:104497444:104497600:104498353:104498424,	104497445	104497600	104497472	104497472	Frame_Shift_Del	T	-	p.F1104fs
LIHC	TCGA-DD-A3A1-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105172371:105172513:105173246:105173388:105173589:105174339,	105173247	105173388	105173291	105173291	Frame_Shift_Del	G	-	p.Q296fs
LIHC	TCGA-DD-A3A1-01	JAG2	ENST00000347004.2	chr14	105624042:105624100:105634093:105634444:105634691:105635161,	105634094	105634444	105634408	105634408	Frame_Shift_Del	T	-	p.S35fs
LIHC	TCGA-DD-A3A1-01	LCTL	ENST00000537670.1,ENST00000565875.1,ENST00000341509.5	chr15	66844380:66844507:66845321:66845596:66850059:66850221,	66845322	66845596	66845395	66845395	Frame_Shift_Del	T	-	p.N375fs
LIHC	TCGA-DD-A3A1-01	IL16	ENST00000560241.1	chr15	81475200:81475237:81517639:81518052:81552112:81552221,	81517640	81518052	81517848	81517848	Frame_Shift_Del	C	-	p.S36fs
LIHC	TCGA-DD-A3A1-01	RHCG	ENST00000560081.1	chr15	90020316:90020437:90020747:90020808:90021067:90021205,	90020748	90020808	90020774	90020774	Frame_Shift_Del	G	-	p.A362fs
LIHC	TCGA-DD-A3A1-01	RHCG	ENST00000558360.1,ENST00000558030.1,ENST00000544600.1,ENST00000268122.4	chr15	90020316:90020437:90020747:90020884:90021067:90021205,	90020748	90020884	90020774	90020774	Frame_Shift_Del	G	-	p.A362fs
LIHC	TCGA-DD-A3A1-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670316	99670316	Frame_Shift_Del	C	-	p.S583fs
LIHC	TCGA-DD-A3A1-01	MPG	ENST00000356432.3	chr16	128255:128332:129423:129699:133050:133255,	129424	129699	129618	129618	Frame_Shift_Del	C	-	p.S78fs
LIHC	TCGA-DD-A3A1-01	WDR90	ENST00000548844.1,ENST00000552728.1	chr16	709244:709376:710611:710714:711050:711075,	710612	710714	710703	710703	Frame_Shift_Del	G	-	p.R1127fs
LIHC	TCGA-DD-A3A1-01	CCDC78	ENST00000460023.1,ENST00000466708.1	chr16	775236:775293:775445:775580:775793:775855,	775446	775580	775491	775491	Frame_Shift_Del	G	-	p.P119fs
LIHC	TCGA-DD-A3A1-01	CCDC78	ENST00000544996.1	chr16	775236:775293:775412:775591:775793:775855,	775413	775591	775491	775491	Frame_Shift_Del	G	-	p.P119fs
LIHC	TCGA-DD-A3A1-01	CCDC78	ENST00000463539.1,ENST00000439619.2,ENST00000538176.1,ENST00000293889.6,ENST00000482878.1,ENST00000485091.1,ENST00000471861.1,ENST00000423653.1	chr16	775236:775293:775412:775580:775793:775855,	775413	775580	775491	775491	Frame_Shift_Del	G	-	p.P119fs
LIHC	TCGA-DD-A3A1-01	MSRB1	ENST00000361871.3	chr16	1989095:1989144:1990778:1990893:1991257:1991406,	1990779	1990893	1990862	1990862	Frame_Shift_Del	C	-	p.G79fs
LIHC	TCGA-DD-A3A1-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2133695:2133817:2134228:2134716:2134951:2135027,	2134229	2134716	2134287	2134287	Frame_Shift_Del	G	-	p.R1355fs
LIHC	TCGA-DD-A3A1-01	ANKS3	ENST00000586166.1,ENST00000592077.1,ENST00000585773.1,ENST00000590803.1,ENST00000590193.1,ENST00000590730.1,ENST00000446014.2,ENST00000592698.1,ENST00000304283.4,ENST00000450067.2,ENST00000591653.1,ENST00000592421.1,ENST00000586605.1	chr16	4752167:4752243:4755095:4755254:4764051:4764187,	4755096	4755254	4755251	4755251	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-DD-A3A1-01	GP2	ENST00000572478.1	chr16	20334190:20334301:20335137:20335383:20337659:20337789,	20335138	20335383	20335319	20335319	Frame_Shift_Del	G	-	p.P118fs
LIHC	TCGA-DD-A3A1-01	GP2	ENST00000381362.4	chr16	20334190:20334301:20335137:20335578:20337659:20337789,20334702:20334711:20335137:20335578:20337659:20337789,	20335138	20335578	20335319	20335319	Frame_Shift_Del	G	-	p.P118fs
LIHC	TCGA-DD-A3A1-01	SULT1A2	ENST00000526384.1,ENST00000395630.1,ENST00000335715.4	chr16	28606687:28606785:28606870:28606996:28607103:28607255,	28606871	28606996	28606923	28606923	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A3A1-01	SULT1A2	ENST00000533150.1	chr16	28603583:28603802:28606687:28606996:28607103:28607255,	28606688	28606996	28606923	28606923	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-DD-A3A1-01	BCL7C	ENST00000574418.1	chr16	30900180:30900266:30903906:30904035:30904532:30904611,	30903907	30904035	30903991	30903991	Frame_Shift_Del	G	-	p.Q120fs
LIHC	TCGA-DD-A3A1-01	IRX6	ENST00000290552.7	chr16	55361207:55361317:55361497:55361805:55362611:55363223,	55361498	55361805	55361786	55361786	Frame_Shift_Del	C	-	p.C234fs
LIHC	TCGA-DD-A3A1-01	CNOT1	ENST00000567188.1,ENST00000245138.4,ENST00000317147.5,ENST00000569240.1	chr16	58576134:58576239:58576331:58576472:58577510:58577706,	58576332	58576472	58576365	58576365	Frame_Shift_Del	T	-	p.K1514fs
LIHC	TCGA-DD-A3A1-01	NAE1	ENST00000566336.1	chr16	66860579:66860683:66861882:66862045:66864749:66864820,	66861883	66862045	66861892	66861892	Frame_Shift_Del	T	-	p.N9fs
LIHC	TCGA-DD-A3A1-01	NAE1	ENST00000379463.2	chr16	66860579:66860683:66861882:66861980:66864749:66864820,	66861883	66861980	66861892	66861892	Frame_Shift_Del	T	-	p.N9fs
LIHC	TCGA-DD-A3A1-01	NAE1	ENST00000569348.1	chr16	66860579:66860683:66861837:66861980:66864749:66864820,	66861838	66861980	66861892	66861892	Frame_Shift_Del	T	-	p.N9fs
LIHC	TCGA-DD-A3A1-01	EXOC3L1	ENST00000314586.6	chr16	67220933:67221041:67221127:67221740:67222623:67222843,	67221128	67221740	67221618	67221618	Frame_Shift_Del	C	-	p.E184fs
LIHC	TCGA-DD-A3A1-01	CHTF8	ENST00000448552.2,ENST00000306585.6,ENST00000398235.2	chr16	69154198:69154552:69154955:69155073:69166386:69166470,69154198:69154552:69154955:69155073:69155338:69155395,	69154956	69155073	69155020	69155020	Frame_Shift_Del	A	-	p.I26fs
LIHC	TCGA-DD-A3A1-01	TAT	ENST00000355962.4	chr16	71604171:71604300:71604581:71604734:71605508:71605561,	71604582	71604734	71604728	71604728	Frame_Shift_Del	A	-	p.S256fs
LIHC	TCGA-DD-A3A1-01	AP1G1	ENST00000433195.2,ENST00000569748.1,ENST00000450149.2,ENST00000299980.4	chr16	71798548:71798629:71799391:71799487:71803525:71803602,	71799392	71799487	71799418	71799418	Frame_Shift_Del	A	-	p.S238fs
LIHC	TCGA-DD-A3A1-01	RFWD3	ENST00000571750.1	chr16	74685817:74686020:74694829:74695349:74698521:74698643,	74694830	74695349	74695191	74695191	Frame_Shift_Del	G	-	p.L53fs
LIHC	TCGA-DD-A3A1-01	CDYL2	ENST00000563890.1,ENST00000566173.1,ENST00000562812.1,ENST00000570137.2	chr16	80637812:80638443:80641988:80642132:80646522:80646733,	80641989	80642132	80642069	80642069	Frame_Shift_Del	C	-	p.V428fs
LIHC	TCGA-DD-A3A1-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778673	84778673	Frame_Shift_Del	T	-	p.F196fs
LIHC	TCGA-DD-A3A1-01	SPIRE2	ENST00000378247.3,ENST00000393062.2	chr16	89895105:89895202:89911729:89911773:89916711:89916970,	89911730	89911773	89911769	89911769	Frame_Shift_Del	C	-	p.A95fs
LIHC	TCGA-DD-A3A1-01	INPP5K	ENST00000573790.1,ENST00000449479.1	chr17	1412634:1412647:1412976:1413093:1416746:1416806,1412634:1412647:1412976:1413093:1417165:1417273,	1412977	1413093	1412998	1412998	Frame_Shift_Del	G	-	p.P43fs
LIHC	TCGA-DD-A3A1-01	PITPNA	ENST00000576761.1	chr17	1442162:1442246:1444859:1444934:1451589:1451681,	1444860	1444934	1444911	1444911	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-DD-A3A1-01	PRPF8	ENST00000573681.1,ENST00000573725.1,ENST00000304992.6,ENST00000572621.1	chr17	1563991:1564121:1564286:1564456:1564564:1564623,	1564287	1564456	1564295	1564295	Frame_Shift_Del	C	-	p.G1500fs
LIHC	TCGA-DD-A3A1-01	CTNS	ENST00000399306.2,ENST00000046640.3,ENST00000495445.1,ENST00000452111.1,ENST00000467663.1,ENST00000381870.3	chr17	3540400:3540610:3543481:3543561:3550737:3550816,	3543482	3543561	3543555	3543555	Frame_Shift_Del	A	-	p.K19fs
LIHC	TCGA-DD-A3A1-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462760	5462760	Frame_Shift_Del	A	-	p.L419fs
LIHC	TCGA-DD-A3A1-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798703	7798703	Frame_Shift_Del	G	-	p.W576fs
LIHC	TCGA-DD-A3A1-01	TRPV2	ENST00000577397.1,ENST00000338560.7	chr17	16320875:16321182:16323428:16323562:16325912:16326203,	16323429	16323562	16323540	16323540	Frame_Shift_Del	C	-	p.Y104fs
LIHC	TCGA-DD-A3A1-01	SLC46A1	ENST00000584729.1	chr17	26726361:26726729:26727625:26727783:26731633:26731839,26726361:26726729:26727625:26727783:26729255:26729339,	26727626	26727783	26727679	26727679	Frame_Shift_Del	C	-	p.G423fs
LIHC	TCGA-DD-A3A1-01	PPP1R1B	ENST00000254079.4,ENST00000394265.1,ENST00000580825.1,ENST00000394267.2,ENST00000582680.1,ENST00000583446.1	chr17	37785657:37785815:37786224:37786300:37790135:37790199,	37786225	37786300	37786239	37786239	Frame_Shift_Del	G	-	p.E60fs
LIHC	TCGA-DD-A3A1-01	RARA	ENST00000394089.2,ENST00000254066.5	chr17	38499047:38499119:38504567:38504716:38506035:38506070,38487108:38487648:38504567:38504716:38506035:38506070,	38504568	38504716	38504606	38504606	Frame_Shift_Del	C	-	p.P73fs
LIHC	TCGA-DD-A3A1-01	PLCD3	ENST00000322765.5,ENST00000540511.1	chr17	43190489:43190625:43190806:43190973:43191617:43191734,	43190807	43190973	43190959	43190959	Frame_Shift_Del	G	-	p.Q614fs
LIHC	TCGA-DD-A3A1-01	MRC2	ENST00000303375.5,ENST00000583597.1	chr17	60758422:60758490:60759197:60759298:60759595:60759684,	60759198	60759298	60759250	60759250	Frame_Shift_Del	C	-	p.R919fs
LIHC	TCGA-DD-A3A1-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61428610:61428777:61432143:61432751:61457078:61457187,	61432144	61432751	61432202	61432202	Frame_Shift_Del	A	-	p.E604fs
LIHC	TCGA-DD-A3A1-01	SLC16A6	ENST00000580666.1	chr17	66270188:66270211:66274229:66274468:66287226:66287257,	66274230	66274468	66274367	66274367	Frame_Shift_Del	A	-	p.F33fs
LIHC	TCGA-DD-A3A1-01	WIPI1	ENST00000591744.1,ENST00000546360.1,ENST00000262139.5,ENST00000589459.1,ENST00000589316.1	chr17	66423275:66423394:66424969:66425077:66426136:66426273,	66424970	66425077	66424974	66424974	Frame_Shift_Del	G	-	p.H357fs
LIHC	TCGA-DD-A3A1-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71231807	71231807	Frame_Shift_Del	A	-	p.L62fs
LIHC	TCGA-DD-A3A1-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232523	71232523	Frame_Shift_Del	C	-	p.T301fs
LIHC	TCGA-DD-A3A1-01	TTYH2	ENST00000529107.1,ENST00000269346.4,ENST00000534346.1,ENST00000528128.2	chr17	72239512:72239608:72240115:72240188:72245149:72245219,	72240116	72240188	72240154	72240154	Frame_Shift_Del	G	-	p.W257fs
LIHC	TCGA-DD-A3A1-01	FDXR	ENST00000455107.2,ENST00000579482.1	chr17	72859197:72859368:72860017:72860469:72860601:72860686,	72860018	72860469	72860141	72860141	Frame_Shift_Del	G	-	p.T333fs
LIHC	TCGA-DD-A3A1-01	FDXR	ENST00000544854.1,ENST00000583917.1,ENST00000577509.1,ENST00000578473.1,ENST00000420580.2,ENST00000413947.2,ENST00000582944.1,ENST00000293195.5,ENST00000442102.2,ENST00000581530.1	chr17	72859197:72859368:72860017:72860189:72860269:72860298,	72860018	72860189	72860141	72860141	Frame_Shift_Del	G	-	p.T333fs
LIHC	TCGA-DD-A3A1-01	LLGL2	ENST00000392550.3,ENST00000578638.1,ENST00000545227.2,ENST00000577500.1,ENST00000577200.1,ENST00000167462.5	chr17	73567036:73567181:73567747:73567864:73567978:73568145,	73567748	73567864	73567786	73567786	Frame_Shift_Del	G	-	p.G740fs
LIHC	TCGA-DD-A3A1-01	QRICH2	ENST00000262765.5,ENST00000524722.1	chr17	74272760:74272848:74273243:74273391:74274069:74274270,	74273244	74273391	74273285	74273285	Frame_Shift_Del	G	-	p.R1576fs
LIHC	TCGA-DD-A3A1-01	ST6GALNAC2	ENST00000225276.5,ENST00000586520.1,ENST00000588120.1	chr17	74568718:74568857:74569276:74569445:74570446:74570621,	74569277	74569445	74569373	74569373	Frame_Shift_Del	G	-	p.P146fs
LIHC	TCGA-DD-A3A1-01	ST6GALNAC2	ENST00000588005.1	chr17	74568718:74568857:74569276:74569381:74570446:74570621,	74569277	74569381	74569373	74569373	Frame_Shift_Del	G	-	p.P146fs
LIHC	TCGA-DD-A3A1-01	ST6GALNAC1	ENST00000592042.1,ENST00000156626.7,ENST00000590784.1	chr17	74622370:74622474:74622732:74622871:74623148:74623320,	74622733	74622871	74622850	74622850	Frame_Shift_Del	T	-	p.K398fs
LIHC	TCGA-DD-A3A1-01	ST6GALNAC1	ENST00000156626.7,ENST00000590878.1,ENST00000359088.5	chr17	74623496:74623665:74625093:74625793:74639589:74639742,	74625094	74625793	74625334	74625334	Frame_Shift_Del	G	-	p.P197fs
LIHC	TCGA-DD-A3A1-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189508	75189508	Frame_Shift_Del	C	-	p.H117fs
LIHC	TCGA-DD-A3A1-01	TNRC6C	ENST00000544502.1,ENST00000588847.1,ENST00000335749.4,ENST00000591851.1	chr17	76047147:76047529:76060802:76061018:76063837:76063991,	76060803	76061018	76060857	76060857	Frame_Shift_Del	G	-	p.W814fs
LIHC	TCGA-DD-A3A1-01	NPLOC4	ENST00000570324.1	chr17	79571689:79571753:79573716:79573840:79575753:79575848,79571689:79571753:79573716:79573840:79577235:79577284,	79573717	79573840	79573792	79573792	Frame_Shift_Del	C	-	p.G193fs
LIHC	TCGA-DD-A3A1-01	DCXR	ENST00000580320.1,ENST00000579334.1,ENST00000582074.1,ENST00000581584.1,ENST00000579155.1,ENST00000306869.2,ENST00000578273.1,ENST00000577712.1,ENST00000577532.1,ENST00000582900.1,ENST00000579821.1	chr17	79994289:79994324:79994419:79994519:79994596:79994605,	79994420	79994519	79994506	79994506	Frame_Shift_Del	C	-	p.G121fs
LIHC	TCGA-DD-A3A1-01	B3GNTL1	ENST00000572977.1,ENST00000571954.1,ENST00000576599.1,ENST00000320865.3	chr17	80918932:80919057:80923526:80923622:80962990:80963086,	80923527	80923622	80923567	80923567	Frame_Shift_Del	G	-	p.A76fs
LIHC	TCGA-DD-A3A1-01	SLC39A6	ENST00000269187.5,ENST00000590986.1,ENST00000440549.2	chr18	33696636:33696742:33702014:33702233:33703457:33703627,	33702015	33702233	33702176	33702176	Frame_Shift_Del	T	-	p.R400fs
LIHC	TCGA-DD-A3A1-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470840	44470840	Frame_Shift_Del	T	-	p.T68fs
LIHC	TCGA-DD-A3A1-01	CTIF	ENST00000256413.3	chr18	46284289:46284776:46287760:46288060:46343591:46343747,	46287761	46288060	46287919	46287919	Frame_Shift_Del	G	-	p.L410fs
LIHC	TCGA-DD-A3A1-01	SMAD7	ENST00000591805.1,ENST00000262158.2,ENST00000586093.1	chr18	46448240:46448280:46468850:46468925:46474753:46474807,	46468851	46468925	46468883	46468883	Frame_Shift_Del	C	-	p.G237fs
LIHC	TCGA-DD-A3A1-01	SMAD7	ENST00000589634.1	chr18	46448240:46448280:46468850:46468922:46474753:46474807,	46468851	46468922	46468883	46468883	Frame_Shift_Del	C	-	p.G237fs
LIHC	TCGA-DD-A3A1-01	TCF4	ENST00000565908.2,ENST00000566514.1,ENST00000568169.1,ENST00000563686.1,ENST00000354452.3,ENST00000543082.1,ENST00000568147.1,ENST00000568673.1,ENST00000564343.1,ENST00000565018.2,ENST00000562847.1,ENST00000563888.2,ENST00000564999.1,ENST00000540999.1,ENST00000566286.1,ENST00000356073.4,ENST00000562543.1,ENST00000537578.1,ENST00000398339.1,ENST00000563824.1,ENST00000564403.2	chr18	53018197:53018234:53070684:53070749:53128249:53128346,	53070685	53070749	53070725	53070725	Frame_Shift_Del	G	-	p.S111fs
LIHC	TCGA-DD-A3A1-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203542	56203542	Frame_Shift_Del	T	-	p.I1293fs
LIHC	TCGA-DD-A3A1-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203898	56203898	Frame_Shift_Del	T	-	p.H1174fs
LIHC	TCGA-DD-A3A1-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203982	56203982	Frame_Shift_Del	C	-	p.G1146fs
LIHC	TCGA-DD-A3A1-01	CDH20	ENST00000538374.1,ENST00000536675.2,ENST00000262717.4	chr18	59170185:59170353:59174605:59174793:59195199:59195453,	59174606	59174793	59174758	59174758	Frame_Shift_Del	C	-	p.P328fs
LIHC	TCGA-DD-A3A1-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000565918.1,ENST00000443099.2	chr18	66368981:66369027:66377257:66377381:66378600:66378640,	66377258	66377381	66377309	66377309	Frame_Shift_Del	T	-	p.S72fs
LIHC	TCGA-DD-A3A1-01	ZNF407	ENST00000299687.5,ENST00000577538.1	chr18	72352963:72353078:72493383:72493458:72589152:72589319,	72493384	72493458	72493411	72493411	Frame_Shift_Del	A	-	p.L1610fs
LIHC	TCGA-DD-A3A1-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6	chr19	1051447:1051585:1051940:1052125:1052212:1052285,	1051941	1052125	1052040	1052040	Frame_Shift_Del	C	-	p.S1021fs
LIHC	TCGA-DD-A3A1-01	FZR1	ENST00000591290.1	chr19	3531908:3532093:3532574:3532648:3533291:3533396,	3532575	3532648	3532616	3532616	Frame_Shift_Del	A	-	p.N404fs
LIHC	TCGA-DD-A3A1-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532616	3532616	Frame_Shift_Del	A	-	p.N404fs
LIHC	TCGA-DD-A3A1-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8136931:8137082:8137946:8138181:8139954:8140074,	8137947	8138181	8138064	8138064	Frame_Shift_Del	C	-	p.G2607fs
LIHC	TCGA-DD-A3A1-01	ZNF563	ENST00000595977.1	chr19	12430000:12430125:12430243:12430647:12432085:12432146,	12430244	12430647	12430592	12430592	Frame_Shift_Del	T	-	p.T83fs
LIHC	TCGA-DD-A3A1-01	C19orf57	ENST00000346736.2,ENST00000454313.1,ENST00000586783.1	chr19	13996773:13996868:14000000:14001275:14003598:14003703,	14000001	14001275	14000020	14000020	Frame_Shift_Del	A	-	p.F550fs
LIHC	TCGA-DD-A3A1-01	AKAP8	ENST00000269701.2	chr19	15483661:15484151:15484596:15484876:15485413:15485446,	15484597	15484876	15484847	15484847	Frame_Shift_Del	G	-	p.Q41fs
LIHC	TCGA-DD-A3A1-01	CEP89	ENST00000586984.2,ENST00000305768.5,ENST00000590597.2	chr19	33422334:33422477:33424356:33424575:33428536:33428579,	33424357	33424575	33424372	33424372	Frame_Shift_Del	C	-	p.A291fs
LIHC	TCGA-DD-A3A1-01	NUMBL	ENST00000600967.1	chr19	41179456:41179554:41183136:41183326:41186821:41186962,41179348:41179551:41183136:41183326:41186821:41186962,	41183137	41183326	41183260	41183260	Frame_Shift_Del	C	-	p.E203fs
LIHC	TCGA-DD-A3A1-01	SYMPK	ENST00000598329.2,ENST00000593504.1,ENST00000600237.1,ENST00000245934.7,ENST00000598155.1	chr19	46319740:46319835:46320055:46320232:46321216:46321271,	46320056	46320232	46320137	46320137	Frame_Shift_Del	C	-	p.Q1060fs
LIHC	TCGA-DD-A3A1-01	SYMPK	ENST00000598329.2,ENST00000593504.1,ENST00000600237.1,ENST00000245934.7,ENST00000599814.1,ENST00000598155.1,ENST00000599460.1	chr19	46324641:46324743:46326013:46326104:46326629:46326730,	46326014	46326104	46326060	46326060	Frame_Shift_Del	G	-	p.P915fs
LIHC	TCGA-DD-A3A1-01	SDCBP2	ENST00000360779.3,ENST00000381812.1,ENST00000381808.3,ENST00000339987.3	chr20	1292980:1293152:1293230:1293406:1293983:1294142,	1293231	1293406	1293241	1293241	Frame_Shift_Del	C	-	p.V184fs
LIHC	TCGA-DD-A3A1-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3674867:3675179:3675309:3675570:3677232:3677535,	3675310	3675570	3675479	3675479	Frame_Shift_Del	C	-	p.G925fs
LIHC	TCGA-DD-A3A1-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9416206:9416295:9417648:9417799:9424627:9424677,	9417649	9417799	9417728	9417728	Frame_Shift_Del	C	-	p.T886fs
LIHC	TCGA-DD-A3A1-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21362631:21362695:21367505:21367644:21369910:21370263,	21367506	21367644	21367550	21367550	Frame_Shift_Del	A	-	p.Q898fs
LIHC	TCGA-DD-A3A1-01	NAPB	ENST00000377026.4	chr20	23375558:23375636:23377708:23377825:23383629:23383709,23375775:23375822:23377708:23377825:23383629:23383709,	23377709	23377825	23377808	23377808	Frame_Shift_Del	A	-	p.C66fs
LIHC	TCGA-DD-A3A1-01	DYNLRB1	ENST00000357156.2,ENST00000374846.3	chr20	33114076:33114148:33122431:33122599:33128384:33128762,	33122432	33122599	33122554	33122554	Frame_Shift_Del	T	-	p.F68fs
LIHC	TCGA-DD-A3A1-01	SOGA1	ENST00000357779.3,ENST00000456801.2,ENST00000237536.4,ENST00000279034.6,ENST00000465671.1	chr20	35425904:35425976:35431258:35431510:35433137:35433305,	35431259	35431510	35431314	35431314	Frame_Shift_Del	C	-	p.G1095fs
LIHC	TCGA-DD-A3A1-01	MROH8	ENST00000217333.8,ENST00000417458.1,ENST00000441008.2,ENST00000343811.4,ENST00000400441.3	chr20	35748100:35748241:35748906:35749021:35749301:35749439,	35748907	35749021	35749008	35749008	Frame_Shift_Del	T	-	p.R710fs
LIHC	TCGA-DD-A3A1-01	ARFGEF2	ENST00000371917.4	chr20	47588862:47588962:47589681:47589821:47591302:47591411,	47589682	47589821	47589771	47589771	Frame_Shift_Del	A	-	p.K539fs
LIHC	TCGA-DD-A3A1-01	PTPN1	ENST00000371621.3,ENST00000541713.1	chr20	49191053:49191191:49194956:49195166:49195704:49195866,	49194957	49195166	49195044	49195044	Frame_Shift_Del	T	-	p.F194fs
LIHC	TCGA-DD-A3A1-01	UCKL1	ENST00000369908.5,ENST00000358711.3,ENST00000369892.3,ENST00000354216.6,ENST00000430743.1	chr20	62571730:62571838:62571946:62572069:62572146:62572209,	62571947	62572069	62572036	62572036	Frame_Shift_Del	T	-	p.T390fs
LIHC	TCGA-DD-A3A1-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000437626.1,ENST00000348831.4	chr21	46604837:46605006:46624469:46624651:46640750:46640885,	46624470	46624651	46624472	46624472	Frame_Shift_Del	G	-	p.W563fs
LIHC	TCGA-DD-A3A1-01	ARVCF	ENST00000406522.1,ENST00000263207.3,ENST00000344269.3,ENST00000406259.1,ENST00000401994.1	chr22	19966419:19966603:19967265:19967765:19968733:19969260,	19967266	19967765	19967501	19967501	Frame_Shift_Del	A	-	p.F387fs
LIHC	TCGA-DD-A3A1-01	TANGO2	ENST00000399807.3	chr22	20008661:20008769:20024282:20024617:20030877:20030966,20008624:20008657:20024282:20024617:20030877:20030966,	20024283	20024617	20024497	20024497	Frame_Shift_Del	C	-	p.A20fs
LIHC	TCGA-DD-A3A1-01	PI4KA	ENST00000572273.1,ENST00000255882.6	chr22	21088330:21088482:21088682:21088841:21096515:21096643,	21088683	21088841	21088794	21088794	Frame_Shift_Del	T	-	p.K1263fs
LIHC	TCGA-DD-A3A1-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622161	24622161	Frame_Shift_Del	T	-	p.H371fs
LIHC	TCGA-DD-A3A1-01	EWSR1	ENST00000397938.2,ENST00000333395.6,ENST00000331029.7,ENST00000437155.2,ENST00000483415.1,ENST00000406548.1,ENST00000332050.6	chr22	29669729:29669853:29674018:29674205:29678378:29678413,	29674019	29674205	29674065	29674065	Frame_Shift_Del	G	-	p.Q91fs
LIHC	TCGA-DD-A3A1-01	DUSP18	ENST00000407308.1	chr22	31048082:31048284:31059390:31060067:31063448:31063796,31048082:31048284:31059390:31060067:31062793:31062925,	31059391	31060067	31059514	31059514	Frame_Shift_Del	A	-	p.F159fs
LIHC	TCGA-DD-A3A1-01	INPP5J	ENST00000400294.2,ENST00000405300.1	chr22	31520830:31520892:31521818:31521996:31522361:31522475,	31521819	31521996	31521857	31521857	Frame_Shift_Del	A	-	p.T378fs
LIHC	TCGA-DD-A3A1-01	INPP5J	ENST00000331075.5	chr22	31520127:31520249:31520830:31521996:31522361:31522475,31518979:31519105:31520830:31521996:31522361:31522475,	31520831	31521996	31521857	31521857	Frame_Shift_Del	A	-	p.T378fs
LIHC	TCGA-DD-A3A1-01	WBP2NL	ENST00000329620.5,ENST00000436265.1,ENST00000328823.9	chr22	42394796:42394884:42415314:42415423:42415665:42415807,	42415315	42415423	42415379	42415379	Frame_Shift_Del	T	-	p.F43fs
LIHC	TCGA-DD-A3A1-01	GRAMD4	ENST00000361034.3,ENST00000406902.1	chr22	47033736:47033857:47054083:47054204:47057277:47057339,	47054084	47054204	47054172	47054172	Frame_Shift_Del	G	-	p.L124fs
LIHC	TCGA-DD-A3A1-01	TUBGCP6	ENST00000439308.2	chr22	50658385:50658444:50658620:50660303:50660456:50660531,	50658621	50660303	50659572	50659572	Frame_Shift_Del	G	-	p.P1072fs
LIHC	TCGA-DD-A3A1-01	TUBGCP6	ENST00000248846.5	chr22	50658385:50658444:50658679:50660303:50660456:50660531,	50658680	50660303	50659572	50659572	Frame_Shift_Del	G	-	p.P1072fs
LIHC	TCGA-DD-A3A1-01	MAPK12	ENST00000215659.8,ENST00000482969.1,ENST00000497036.1,ENST00000467891.1,ENST00000395780.1,ENST00000488504.1	chr22	50694043:50694123:50694238:50694310:50694513:50694628,	50694239	50694310	50694269	50694269	Frame_Shift_Del	T	-	p.T221fs
LIHC	TCGA-DD-A3A1-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745472	17745472	Frame_Shift_Del	A	-	p.P1061fs
LIHC	TCGA-DD-A3A1-01	SAT1	ENST00000379270.4	chrX	23801777:23801826:23801916:23802000:23803444:23803546,	23801917	23802000	23801979	23801979	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-DD-A3A1-01	PRICKLE3	ENST00000540849.1,ENST00000453382.1,ENST00000536904.1,ENST00000376317.3	chrX	49033534:49033551:49034341:49034528:49034620:49034824,	49034342	49034528	49034351	49034351	Frame_Shift_Del	C	-	p.E316fs
LIHC	TCGA-DD-A3A1-01	OPHN1	ENST00000355520.5,ENST00000540071.1	chrX	67333022:67333081:67339089:67339174:67412760:67412835,	67339090	67339174	67339146	67339146	Frame_Shift_Del	A	-	p.F435fs
LIHC	TCGA-DD-A3A1-01	ZDHHC15	ENST00000373367.3,ENST00000541184.1	chrX	74641698:74641825:74644486:74644619:74648912:74649033,	74644487	74644619	74644494	74644494	Frame_Shift_Del	G	-	p.T235fs
LIHC	TCGA-DD-A3A1-01	ACSL4	ENST00000504980.1	chrX	108926097:108926125:108926364:108926781:108976367:108976442,108926097:108926125:108926364:108926781:108939372:108939425,	108926365	108926781	108926575	108926575	Frame_Shift_Del	T	-	p.K47fs
LIHC	TCGA-DD-A3A1-01	ACSL4	ENST00000469796.2	chrX	108926097:108926125:108926364:108926895:108976367:108976442,108926097:108926125:108926364:108926895:108939372:108939425,	108926365	108926895	108926575	108926575	Frame_Shift_Del	T	-	p.K47fs
LIHC	TCGA-DD-A3A1-01	ACSL4	ENST00000348502.6	chrX	108926097:108926125:108926364:108926601:108939372:108939425,	108926365	108926601	108926575	108926575	Frame_Shift_Del	T	-	p.K47fs
LIHC	TCGA-DD-A3A1-01	SMARCA1	ENST00000371123.1,ENST00000371121.3	chrX	128624036:128624169:128625917:128626070:128630726:128630848,	128625918	128626070	128625945	128625945	Frame_Shift_Del	C	-	p.W596fs
LIHC	TCGA-DD-A3A1-01	FLNA	ENST00000490936.1,ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153581663:153581825:153581921:153582095:153582282:153582407,	153581922	153582095	153582064	153582064	Frame_Shift_Del	G	-	p.S1898fs
LIHC	TCGA-DD-A3A1-01	GDI1	ENST00000434049.1,ENST00000485143.1,ENST00000475976.1,ENST00000445564.1,ENST00000481304.1,ENST00000447750.2,ENST00000415109.1,ENST00000491154.1	chrX	153666868:153666976:153667110:153667210:153667351:153667398,	153667111	153667210	153667189	153667189	Frame_Shift_Del	C	-	p.P78fs
LIHC	TCGA-DD-A3A1-01	GDI1	ENST00000445564.1,ENST00000481304.1,ENST00000447750.2,ENST00000491154.1	chrX	153667110:153667210:153667351:153667486:153668287:153668319,	153667352	153667486	153667441	153667441	Frame_Shift_Del	A	-	p.K115fs
LIHC	TCGA-DD-A3A1-01	TMLHE	ENST00000369439.4,ENST00000334398.3	chrX	154743646:154743926:154754116:154754293:154774756:154774938,	154754117	154754293	154754250	154754250	Frame_Shift_Del	C	-	p.W75fs
LIHC	TCGA-DD-A3A3-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635624	32635625	Frame_Shift_Ins	-	T	p.Y747fs
LIHC	TCGA-DD-A3A4-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LIHC	TCGA-DD-A3A4-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LIHC	TCGA-DD-A3A5-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40794906	40794907	Frame_Shift_Ins	-	T	p.T278fs
LIHC	TCGA-DD-A3A6-01	R3HDM4	ENST00000590454.1	chr19	900828:900952:901419:901546:901975:902067,	901420	901546	901496	901496	Frame_Shift_Del	C	-	p.E93fs
LIHC	TCGA-DD-A3A6-01	R3HDM4	ENST00000587975.1,ENST00000591829.1,ENST00000361574.5,ENST00000590259.1	chr19	900828:900952:901421:901546:901975:902067,	901422	901546	901496	901496	Frame_Shift_Del	C	-	p.E93fs
LIHC	TCGA-DD-A3A6-01	NF2	ENST00000334961.7,ENST00000353887.4	chr22	30035078:30035201:30038190:30038274:30050645:30050714,29999987:30000101:30038190:30038274:30050645:30050714,	30038191	30038274	30038257	30038258	Frame_Shift_Ins	-	A	p.R144fs
LIHC	TCGA-DD-A3A7-01	IMMP1L	ENST00000532624.1,ENST00000278200.1,ENST00000530023.1,ENST00000527184.1,ENST00000529749.1,ENST00000532287.1	chr11	31477859:31477933:31482172:31482261:31484718:31484852,	31482173	31482261	31482231	31482232	Frame_Shift_Ins	-	A	p.IK45fs
LIHC	TCGA-DD-A3A8-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.DP591fs
LIHC	TCGA-DD-A3A8-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35295218:35295362:35331249:35331528:35343697:35343868,	35331250	35331528	35331423	35331423	Frame_Shift_Del	T	-	p.K73fs
LIHC	TCGA-DD-A3A9-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535490	40535491	Frame_Shift_Ins	-	G	p.S313fs
LIHC	TCGA-DD-A4NA-01	THBS3	ENST00000541576.1	chr1	155170246:155170401:155170687:155170795:155170884:155170995,155170246:155170401:155170687:155170795:155171207:155171360,	155170688	155170795	155170766	155170766	Frame_Shift_Del	C	-	p.G490fs
LIHC	TCGA-DD-A4NB-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131436	202131437	Frame_Shift_Ins	-	AG	p.N135fs
LIHC	TCGA-DD-A4NB-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131436	202131437	Frame_Shift_Ins	-	AG	p.N135fs
LIHC	TCGA-DD-A4NB-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263483	1263484	Frame_Shift_Del	AG	-	p.TE1794fs
LIHC	TCGA-DD-A4NB-01	MKNK2	ENST00000589441.1	chr19	2037630:2037828:2039629:2039855:2040132:2040176,	2039630	2039855	2039747	2039748	Frame_Shift_Ins	-	TT	p.R421fs
LIHC	TCGA-DD-A4NE-01	SPAG6	ENST00000376601.1,ENST00000376603.2,ENST00000376624.3,ENST00000538630.1	chr10	22690089:22690206:22699959:22700105:22705547:22705702,	22699960	22700105	22700061	22700070	Frame_Shift_Del	ATACATCAAC	-	p.EYIN548fs
LIHC	TCGA-DD-A4NE-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729786	78729786	Frame_Shift_Del	T	-	p.K711fs
LIHC	TCGA-DD-A4NF-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351321	134351322	Frame_Shift_Ins	-	G	p.G1269fs
LIHC	TCGA-DD-A4NG-01	KPNA5	ENST00000368564.1,ENST00000356348.1	chr6	117013455:117013555:117019866:117019961:117023181:117023313,	117019867	117019961	117019926	117019927	Frame_Shift_Del	AA	-	p.K134fs
LIHC	TCGA-DD-A4NG-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000375389.3,ENST00000446420.2	chr9	96214665:96214671:96233422:96233669:96238537:96238620,	96233423	96233669	96233651	96233652	Frame_Shift_Ins	-	T	p.F235fs
LIHC	TCGA-DD-A4NH-01	STAT5B	ENST00000468312.1	chr17	40379606:40379703:40384017:40384155:40428265:40428424,	40384018	40384155	40384099	40384100	Frame_Shift_Ins	-	G	p.S16fs
LIHC	TCGA-DD-A4NI-01	HABP4	ENST00000375251.3,ENST00000466976.1,ENST00000375249.4	chr9	99246743:99246915:99250370:99250556:99252263:99253618,	99250371	99250556	99250415	99250416	Frame_Shift_Ins	-	C	p.R349fs
LIHC	TCGA-DD-A4NN-01	FHOD3	ENST00000592128.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34335081:34335274:34340570:34340745:34349227:34349389,	34340571	34340745	34340646	34340647	Frame_Shift_Ins	-	GT	p.A1326fs
LIHC	TCGA-DD-A4NQ-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167254657:167254788:167272470:167272586:167277851:167278016,	167272471	167272586	167272493	167272493	Frame_Shift_Del	T	-	p.I249fs
LIHC	TCGA-DD-A4NQ-01	WDR49	ENST00000453925.2,ENST00000472600.1	chr3	167254657:167254788:167272437:167272586:167277851:167278016,	167272438	167272586	167272493	167272493	Frame_Shift_Del	T	-	p.I249fs
LIHC	TCGA-DD-A4NQ-01	PDLIM3	ENST00000515261.1,ENST00000284771.6,ENST00000504011.1,ENST00000284767.5	chr4	186435299:186435491:186446173:186446325:186456495:186456620,186444515:186444600:186446173:186446325:186456495:186456620,	186446174	186446325	186446243	186446247	Frame_Shift_Del	GACTC	-	p.ES58fs
LIHC	TCGA-DD-A4NS-01	CD46	ENST00000441839.2,ENST00000358170.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1,ENST00000367047.1	chr1	207932983:207933069:207934593:207934791:207940357:207940462,	207934594	207934791	207934716	207934716	Frame_Shift_Del	T	-	p.F200fs
LIHC	TCGA-DD-A4NS-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29654516:29654857:29657313:29657516:29661855:29662049,	29657314	29657516	29657493	29657494	Frame_Shift_Ins	-	TT	p.Y1930fs
LIHC	TCGA-DD-A73B-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214774	108214774	Frame_Shift_Del	T	-	p.K530fs
LIHC	TCGA-DD-A73C-01	TRPV6	ENST00000359396.3	chr7	142574576:142574590:142574894:142575032:142575403:142575526,	142574895	142575032	142574898	142574899	Frame_Shift_Del	AG	-	p.YF161fs
LIHC	TCGA-DD-A73C-01	TRPV6	ENST00000489123.1	chr7	142574576:142574590:142574894:142575526:142575681:142575708,	142574895	142575526	142574898	142574899	Frame_Shift_Del	AG	-	p.YF161fs
LIHC	TCGA-DD-A73D-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075517	100075518	Frame_Shift_Del	TG	-	p.PS48fs
LIHC	TCGA-DD-A73F-01	APOC1	ENST00000592885.1	chr19	45418130:45418206:45419446:45419727:45422429:45422466,	45419447	45419727	45419665	45419666	Frame_Shift_Ins	-	A	p.K93fs
LIHC	TCGA-DD-A73G-01	RPS23	ENST00000507980.1,ENST00000512493.1,ENST00000510019.1,ENST00000510210.1	chr5	81572269:81572337:81573511:81573671:81574138:81574160,	81573512	81573671	81573513	81573514	Frame_Shift_Ins	-	T	p.NV54fs
LIHC	TCGA-DD-A73G-01	CTNS	ENST00000399306.2,ENST00000046640.3,ENST00000495445.1,ENST00000452111.1,ENST00000467663.1,ENST00000381870.3	chr17	3540400:3540610:3543481:3543561:3550737:3550816,	3543482	3543561	3543532	3543532	Frame_Shift_Del	T	-	p.L11fs
LIHC	TCGA-DD-A73G-01	BRD4	ENST00000263377.2	chr19	15353710:15354298:15355041:15355411:15355520:15355573,	15355042	15355411	15355113	15355125	Frame_Shift_Del	GGGGGCAGCTCAG	-	p.PELPP833fs
LIHC	TCGA-ED-A459-01	CPQ	ENST00000220763.5	chr8	97847200:97847408:97892025:97892233:97978162:97978274,	97892026	97892233	97892096	97892106	Frame_Shift_Del	GATGCAGAAAT	-	p.DAEM238fs
LIHC	TCGA-ED-A7XP-01	SEC22A	ENST00000473494.2,ENST00000309934.4,ENST00000492595.1	chr3	122964745:122964861:122978370:122978436:122990368:122990511,	122978371	122978436	122978413	122978413	Frame_Shift_Del	G	-	p.G234fs
LIHC	TCGA-ED-A82E-01	MED29	ENST00000596297.1,ENST00000599213.2,ENST00000315588.5,ENST00000594368.1	chr19	39882051:39882278:39883103:39883162:39884192:39884277,	39883104	39883162	39883132	39883133	Frame_Shift_Ins	-	GATTCAGAAC	p.Y103fs
LIHC	TCGA-EP-A12J-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
LIHC	TCGA-EP-A12J-01	SLC50A1	ENST00000475824.1,ENST00000488609.1,ENST00000368404.4	chr1	155108774:155108852:155110036:155110198:155110454:155110570,155109303:155109427:155110036:155110198:155110454:155110570,	155110037	155110198	155110094	155110095	Frame_Shift_Ins	-	A	p.L114fs
LIHC	TCGA-EP-A12J-01	SLC50A1	ENST00000490770.1	chr1	155109303:155109427:155110054:155110198:155110454:155110570,	155110055	155110198	155110094	155110095	Frame_Shift_Ins	-	A	p.L114fs
LIHC	TCGA-EP-A12J-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194146070:194146258:194147803:194147981:194149573:194149646,	194147804	194147981	194147850	194147850	Frame_Shift_Del	A	-	p.W1027fs
LIHC	TCGA-EP-A12J-01	WWC2	ENST00000403733.3,ENST00000427431.1,ENST00000448232.2,ENST00000504005.1,ENST00000513834.1	chr4	184190123:184190316:184192232:184192394:184201928:184202050,	184192233	184192394	184192366	184192367	Frame_Shift_Ins	-	C	p.T845fs
LIHC	TCGA-EP-A12J-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
LIHC	TCGA-EP-A12J-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630630	158630630	Frame_Shift_Del	T	-	p.N28fs
LIHC	TCGA-EP-A12J-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128138089:128138196:128140956:128141022:128141815:128141886,	128140957	128141022	128140983	128140984	Frame_Shift_Ins	-	T	p.E250fs
LIHC	TCGA-EP-A12J-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.A29fs
LIHC	TCGA-EP-A12J-01	LAMA1	ENST00000492048.1,ENST00000488064.1,ENST00000389658.3,ENST00000579014.1	chr18	6941946:6942238:6943178:6943401:6947161:6947295,	6943179	6943401	6943341	6943342	Frame_Shift_Ins	-	G	p.H2969fs
LIHC	TCGA-EP-A26S-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87049313:87049391:87051436:87051541:87053221:87053368,	87051437	87051541	87051459	87051459	Frame_Shift_Del	G	-	p.S765fs
LIHC	TCGA-EP-A26S-01	LONRF1	ENST00000524526.2,ENST00000533751.1,ENST00000398246.3,ENST00000526610.1,ENST00000526680.1	chr8	12586682:12586841:12589244:12589366:12592794:12592909,	12589245	12589366	12589276	12589276	Frame_Shift_Del	T	-	p.I553fs
LIHC	TCGA-EP-A26S-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635951	32635951	Frame_Shift_Del	T	-	p.N638fs
LIHC	TCGA-EP-A26S-01	DCN	ENST00000549513.1,ENST00000052754.5,ENST00000393155.1,ENST00000550563.1,ENST00000552145.1,ENST00000552962.1,ENST00000547937.1	chr12	91540012:91540029:91558381:91558494:91572118:91572178,91552252:91552286:91558381:91558494:91572118:91572329,	91558382	91558494	91558424	91558424	Frame_Shift_Del	G	-	p.T94fs
LIHC	TCGA-EP-A26S-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510230	195510230	Frame_Shift_Del	C	-	p.E2741fs
LIHC	TCGA-EP-A2KA-01	BACE1	ENST00000530824.1,ENST00000428381.2,ENST00000445823.2,ENST00000513780.1,ENST00000392937.6,ENST00000509916.1,ENST00000510630.1,ENST00000313005.6	chr11	117161349:117161375:117161615:117161765:117162427:117162529,	117161616	117161765	117161738	117161739	Frame_Shift_Ins	-	C	p.CR323fs
LIHC	TCGA-EP-A2KA-01	SMARCC2	ENST00000394023.3	chr12	56557128:56557549:56558086:56558152:56558431:56558515,	56558087	56558152	56558092	56558093	Frame_Shift_Ins	-	GT	p.A1126fs
LIHC	TCGA-EP-A3JL-01	ALB	ENST00000514786.1,ENST00000295897.4,ENST00000509063.1,ENST00000441319.1	chr4	74272367:74272478:74274310:74274522:74275071:74275204,	74274311	74274522	74274387	74274388	Frame_Shift_Ins	-	A	p.E116fs
LIHC	TCGA-ES-A2HS-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	359972:360069:364542:364683:396147:396322,	364543	364683	364562	364563	Frame_Shift_Del	AC	-	p.LS333fs
LIHC	TCGA-ES-A2HT-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6679883	6679883	Frame_Shift_Del	C	-	p.S54fs
LIHC	TCGA-FV-A23B-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977650	99977650	Frame_Shift_Del	A	-	p.K99fs
LIHC	TCGA-FV-A2QR-01	RGS2	ENST00000464302.1	chr1	192778272:192778311:192779295:192779561:192780110:192780162,	192779296	192779561	192779369	192779369	Frame_Shift_Del	A	-	p.K63fs
LIHC	TCGA-FV-A2QR-01	ZFAT	ENST00000517307.1,ENST00000520727.1,ENST00000429442.2,ENST00000377838.3,ENST00000523399.1,ENST00000520356.1,ENST00000518408.1,ENST00000520214.1,ENST00000523924.1	chr8	135533125:135533244:135545076:135545215:135577229:135577395,135533125:135533244:135545076:135545215:135577575:135577664,	135545077	135545215	135545117	135545124	Frame_Shift_Del	CACGTTGG	-	p.ANV1011fs
LIHC	TCGA-FV-A2QR-01	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505302	56505302	Frame_Shift_Del	A	-	p.K373fs
LIHC	TCGA-FV-A2QR-01	BCL2	ENST00000333681.4	chr18	60795444:60795992:60985314:60986185:60986406:60986613,	60985315	60986185	60985776	60985776	Frame_Shift_Del	C	-	p.A43fs
LIHC	TCGA-FV-A2QR-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42054255:42054356:42057334:42057448:42059625:42059637,	42057335	42057448	42057392	42057407	Frame_Shift_Del	AGCTTGTTTACCCACC	-	p.ELVYPP527fs
LIHC	TCGA-FV-A2QR-01	FBLN1	ENST00000348697.2,ENST00000340923.5,ENST00000327858.6,ENST00000442170.2,ENST00000262722.7,ENST00000402984.3	chr22	45942964:45943084:45944492:45944624:45946371:45946495,	45944493	45944624	45944598	45944599	Frame_Shift_Ins	-	G	p.R516fs
LIHC	TCGA-FV-A3I0-01	C4orf47	ENST00000511138.1,ENST00000511581.1,ENST00000378850.4	chr4	186350543:186350665:186353135:186353355:186357199:186357285,	186353136	186353355	186353306	186353306	Frame_Shift_Del	A	-	p.K92fs
LIHC	TCGA-FV-A3I0-01	BBS9	ENST00000354265.4,ENST00000242067.6,ENST00000434373.1,ENST00000350941.3,ENST00000433714.1,ENST00000396127.2,ENST00000355070.2	chr7	33427603:33427756:33545074:33545257:33573565:33573788,	33545075	33545257	33545255	33545255	Frame_Shift_Del	T	-	p.L766fs
LIHC	TCGA-FV-A3I1-01	CYP4A22	ENST00000485117.1,ENST00000294337.3,ENST00000371891.3	chr1	47608940:47609065:47609433:47609588:47610028:47610135,	47609434	47609588	47609480	47609481	Frame_Shift_Ins	-	T	p.F228fs
LIHC	TCGA-FV-A3I1-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
LIHC	TCGA-FV-A3I1-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
LIHC	TCGA-FV-A3R2-01	TSC1	ENST00000493467.1,ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135785957:135786079:135786388:135786500:135786839:135786955,	135786389	135786500	135786464	135786464	Frame_Shift_Del	T	-	p.T357fs
LIHC	TCGA-FV-A3R3-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81412242	81412243	Frame_Shift_Ins	-	A	p.K496fs
LIHC	TCGA-FV-A3R3-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52972291	52972300	Frame_Shift_Del	CTGGCTCTCT	-	p.REPG30fs
LIHC	TCGA-FV-A496-01	SLC1A1	ENST00000262352.3	chr9	4576568:4576763:4583037:4583172:4585311:4585557,	4583038	4583172	4583118	4583133	Frame_Shift_Del	CCGTGGGCCTGCCCGC	-	p.AVGLPA425fs
LIHC	TCGA-G3-A25S-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283247:74283386:74283804:74283819,	74283248	74283386	74283297	74283298	Frame_Shift_Ins	-	T	p.C447fs
LIHC	TCGA-G3-A25S-01	L3MBTL1	ENST00000468336.1,ENST00000430781.2,ENST00000427442.2,ENST00000418998.1,ENST00000444063.1,ENST00000473981.1,ENST00000373134.1,ENST00000373135.3	chr20	42143347:42143416:42143648:42143799:42143931:42144055,	42143649	42143799	42143656	42143656	Frame_Shift_Del	C	-	p.H80fs
LIHC	TCGA-G3-A25T-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554288.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53347961:53348187:53360010:53360145:53385840:53386057,	53360011	53360145	53360082	53360082	Frame_Shift_Del	T	-	p.K154fs
LIHC	TCGA-G3-A25U-01	GOLIM4	ENST00000309027.4,ENST00000470487.1	chr3	167728022:167728206:167728530:167728611:167742313:167742382,	167728531	167728611	167728581	167728581	Frame_Shift_Del	T	-	p.R631fs
LIHC	TCGA-G3-A25U-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100589717:100589861:100654038:100654726:100673581:100673719,	100654039	100654726	100654474	100654474	Frame_Shift_Del	A	-	p.K1912fs
LIHC	TCGA-G3-A25V-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.K321fs
LIHC	TCGA-G3-A25V-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602811.1,ENST00000581941.1,ENST00000602537.1	chr17	11924292:11924318:11998891:11999011:12013691:12013743,11958205:11958308:11998891:11999011:12011106:12011226,11984672:11984847:11998891:11999011:12011106:12011226,	11998892	11999011	11998923	11998923	Frame_Shift_Del	A	-	p.Q153fs
LIHC	TCGA-G3-A25V-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54783402	54783402	Frame_Shift_Del	T	-	p.E1035fs
LIHC	TCGA-G3-A25W-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316639	133316639	Frame_Shift_Del	T	-	p.N111fs
LIHC	TCGA-G3-A25Y-01	ARHGEF28	ENST00000426542.2,ENST00000287898.5,ENST00000296794.6,ENST00000513042.2,ENST00000296799.4,ENST00000545377.1,ENST00000437974.1,ENST00000512883.1	chr5	73200182:73200230:73205236:73205722:73207099:73207400,	73205237	73205722	73205602	73205602	Frame_Shift_Del	G	-	p.E1509fs
LIHC	TCGA-G3-A25Y-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
LIHC	TCGA-G3-A25Y-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645832	54645832	Frame_Shift_Del	T	-	p.K106fs
LIHC	TCGA-G3-A25Y-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88486457:88486609:88487546:88487752:88490664:88490776,	88487547	88487752	88487681	88487681	Frame_Shift_Del	T	-	p.I1059fs
LIHC	TCGA-G3-A25Y-01	KIR2DL4	ENST00000463062.1	chr19	55320287:55320338:55324579:55324683:55325144:55325197,55317405:55317699:55324579:55324683:55325144:55325197,	55324580	55324683	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
LIHC	TCGA-G3-A25Y-01	KIR2DL4	ENST00000396284.2,ENST00000396289.5	chr19	55320287:55320338:55324579:55324750:55325144:55325197,	55324580	55324750	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
LIHC	TCGA-G3-A25Z-01	INTS10	ENST00000397977.3	chr8	19681383:19681492:19682313:19682483:19683936:19683999,19681405:19681555:19682313:19682483:19683936:19683999,	19682314	19682483	19682357	19682358	Frame_Shift_Ins	-	A	p.H294fs
LIHC	TCGA-G3-A3CG-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073232	197073232	Frame_Shift_Del	T	-	p.I1717fs
LIHC	TCGA-G3-A3CG-01	ICA1	ENST00000407906.1,ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000317367.5,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8196745:8196844:8198156:8198282:8257934:8258089,	8198157	8198282	8198251	8198251	Frame_Shift_Del	T	-	p.N204fs
LIHC	TCGA-G3-A3CG-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75513956	75513957	Frame_Shift_Del	AG	-	p.S801fs
LIHC	TCGA-G3-A3CH-01	TIAL1	ENST00000369093.2	chr10	121341680:121341735:121341970:121342120:121347663:121347722,	121341971	121342120	121342007	121342008	Frame_Shift_Del	TG	-	p.A81fs
LIHC	TCGA-G3-A3CH-01	TIAL1	ENST00000412524.1,ENST00000369092.4,ENST00000489822.1,ENST00000436547.2,ENST00000470781.1,ENST00000497671.1,ENST00000369086.1	chr10	121341680:121341735:121341970:121342069:121347663:121347722,	121341971	121342069	121342007	121342008	Frame_Shift_Del	TG	-	p.A81fs
LIHC	TCGA-G3-A3CJ-01	SAMD11	ENST00000342066.3,ENST00000455979.1,ENST00000341065.4	chr1	877789:877868:877938:878438:878632:878757,	877939	878438	878376	878376	Frame_Shift_Del	T	-	p.L501fs
LIHC	TCGA-G3-A3CJ-01	SAMD11	ENST00000342066.3,ENST00000455979.1,ENST00000341065.4	chr1	877938:878438:878632:878757:879077:879188,	878633	878757	878659	878659	Frame_Shift_Del	G	-	p.G531fs
LIHC	TCGA-G3-A3CJ-01	NOC2L	ENST00000327044.6,ENST00000477976.1	chr1	880897:881033:881552:881666:881781:881877,	881553	881666	881634	881634	Frame_Shift_Del	C	-	p.G612fs
LIHC	TCGA-G3-A3CJ-01	AGRN	ENST00000379370.2	chr1	979713:979819:980540:980657:980738:980903,	980541	980657	980571	980571	Frame_Shift_Del	C	-	p.A762fs
LIHC	TCGA-G3-A3CJ-01	AGRN	ENST00000379370.2	chr1	984615:984831:984945:985175:985282:985417,	984946	985175	984981	984981	Frame_Shift_Del	G	-	p.R1517fs
LIHC	TCGA-G3-A3CJ-01	TNFRSF4	ENST00000497869.1,ENST00000379236.3	chr1	1147083:1147212:1147321:1147518:1148017:1148084,	1147322	1147518	1147441	1147441	Frame_Shift_Del	G	-	p.P172fs
LIHC	TCGA-G3-A3CJ-01	SDF4	ENST00000545427.1,ENST00000465727.1,ENST00000263741.7	chr1	1159211:1159348:1163847:1164326:1167271:1167348,	1163848	1164326	1163998	1163998	Frame_Shift_Del	G	-	p.P59fs
LIHC	TCGA-G3-A3CJ-01	ACAP3	ENST00000467278.1,ENST00000354700.5	chr1	1229878:1230008:1230097:1230196:1230826:1230934,	1230098	1230196	1230169	1230169	Frame_Shift_Del	C	-	p.G614fs
LIHC	TCGA-G3-A3CJ-01	CCNL2	ENST00000497013.1,ENST00000488340.1,ENST00000481223.2,ENST00000496007.1,ENST00000400809.3,ENST00000408918.4,ENST00000425598.2	chr1	1330816:1330894:1333612:1333722:1333976:1334051,	1333613	1333722	1333673	1333673	Frame_Shift_Del	G	-	p.P138fs
LIHC	TCGA-G3-A3CJ-01	VWA1	ENST00000476993.1	chr1	1371114:1371201:1372306:1372864:1374460:1375598,	1372307	1372864	1372625	1372625	Frame_Shift_Del	C	-	p.A131fs
LIHC	TCGA-G3-A3CJ-01	ATAD3A	ENST00000378756.3,ENST00000378755.5,ENST00000536055.1,ENST00000339113.4	chr1	1455927:1455997:1458123:1458279:1458890:1458947,	1458124	1458279	1458151	1458151	Frame_Shift_Del	G	-	p.G308fs
LIHC	TCGA-G3-A3CJ-01	MIB2	ENST00000506488.1,ENST00000378710.3,ENST00000378712.1,ENST00000505820.2,ENST00000357210.4,ENST00000378708.1,ENST00000464570.1,ENST00000360522.4,ENST00000520777.1,ENST00000487053.1,ENST00000489635.1,ENST00000479659.1,ENST00000504599.1,ENST00000514234.1,ENST00000355826.5,ENST00000518681.1	chr1	1563398:1563559:1563652:1563779:1563868:1564102,	1563653	1563779	1563699	1563699	Frame_Shift_Del	A	-	p.K689fs
LIHC	TCGA-G3-A3CJ-01	NADK	ENST00000378625.1,ENST00000342348.5,ENST00000344463.4,ENST00000341426.5,ENST00000341991.3	chr1	1685005:1685088:1685489:1685647:1685722:1685822,	1685490	1685647	1685540	1685540	Frame_Shift_Del	G	-	p.H496fs
LIHC	TCGA-G3-A3CJ-01	GNB1	ENST00000439272.2	chr1	1737913:1737977:1747194:1747301:1749275:1749314,1737913:1737977:1747194:1747301:1756835:1756938,	1747195	1747301	1747239	1747239	Frame_Shift_Del	C	-	p.G53fs
LIHC	TCGA-G3-A3CJ-01	PLCH2	ENST00000449969.1,ENST00000378486.3,ENST00000343889.4,ENST00000378488.3,ENST00000278878.6,ENST00000419816.2	chr1	2418611:2418815:2419036:2419157:2420645:2420817,	2419037	2419157	2419066	2419066	Frame_Shift_Del	C	-	p.P355fs
LIHC	TCGA-G3-A3CJ-01	TP73	ENST00000378290.4,ENST00000378295.4,ENST00000354437.4,ENST00000378285.1,ENST00000378288.4	chr1	3645890:3646012:3646563:3646712:3647490:3647629,	3646564	3646712	3646670	3646670	Frame_Shift_Del	C	-	p.P436fs
LIHC	TCGA-G3-A3CJ-01	DFFB	ENST00000378209.3,ENST00000338895.3,ENST00000491998.1	chr1	3775281:3775408:3782375:3782564:3784537:3784617,	3782376	3782564	3782552	3782552	Frame_Shift_Del	C	-	p.P140fs
LIHC	TCGA-G3-A3CJ-01	RNF207	ENST00000492476.1,ENST00000377939.4	chr1	6271094:6271178:6271926:6272113:6272290:6272476,	6271927	6272113	6271996	6271996	Frame_Shift_Del	G	-	p.S393fs
LIHC	TCGA-G3-A3CJ-01	ESPN	ENST00000377828.1,ENST00000418286.1	chr1	6500718:6500868:6500993:6501125:6504540:6504742,	6500994	6501125	6501078	6501078	Frame_Shift_Del	A	-	p.N315fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG5	ENST00000535355.1,ENST00000377732.1,ENST00000400913.1,ENST00000340850.5,ENST00000489097.1,ENST00000377737.2,ENST00000487949.1,ENST00000537245.1,ENST00000377748.1,ENST00000377728.3,ENST00000400915.3	chr1	6527564:6527632:6527884:6528646:6529101:6529301,	6527885	6528646	6528577	6528577	Frame_Shift_Del	G	-	p.P850fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG5	ENST00000377725.1,ENST00000544978.1	chr1	6527902:6527958:6528158:6528646:6529101:6529301,	6528159	6528646	6528577	6528577	Frame_Shift_Del	G	-	p.P850fs
LIHC	TCGA-G3-A3CJ-01	NOL9	ENST00000377705.5	chr1	6581406:6586063:6586755:6586889:6589053:6589231,	6586756	6586889	6586869	6586869	Frame_Shift_Del	T	-	p.M616fs
LIHC	TCGA-G3-A3CJ-01	NOL9	ENST00000377705.5	chr1	6604885:6604982:6605104:6605240:6609630:6609758,	6605105	6605240	6605171	6605171	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-G3-A3CJ-01	TAS1R1	ENST00000333172.6	chr1	6631000:6631275:6634690:6635452:6636474:6636687,	6634691	6635452	6634862	6634862	Frame_Shift_Del	G	-	p.G224fs
LIHC	TCGA-G3-A3CJ-01	ZBTB48	ENST00000482360.1,ENST00000466813.1,ENST00000377674.4	chr1	6648341:6648502:6648815:6648904:6648975:6649220,	6648816	6648904	6648853	6648853	Frame_Shift_Del	G	-	p.K573fs
LIHC	TCGA-G3-A3CJ-01	KLHL21	ENST00000377663.3	chr1	6655544:6655617:6659106:6659512:6661856:6662929,	6659107	6659512	6659313	6659313	Frame_Shift_Del	G	-	p.P407fs
LIHC	TCGA-G3-A3CJ-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6679883	6679883	Frame_Shift_Del	C	-	p.S54fs
LIHC	TCGA-G3-A3CJ-01	CAMTA1	ENST00000439411.2,ENST00000495233.1,ENST00000303635.7	chr1	7797314:7797630:7798018:7798542:7804894:7805082,	7798019	7798542	7798170	7798170	Frame_Shift_Del	A	-	p.P1270fs
LIHC	TCGA-G3-A3CJ-01	PER3	ENST00000361923.2,ENST00000377532.3	chr1	7863751:7863908:7868952:7869058:7869952:7870081,	7868953	7869058	7868973	7868973	Frame_Shift_Del	T	-	p.V386fs
LIHC	TCGA-G3-A3CJ-01	TNFRSF9	ENST00000377507.3	chr1	7993221:7993356:7995072:7995203:7997749:7997816,	7995073	7995203	7995167	7995167	Frame_Shift_Del	C	-	p.G150fs
LIHC	TCGA-G3-A3CJ-01	SLC2A5	ENST00000486632.1,ENST00000484798.1,ENST00000487835.1,ENST00000377424.4,ENST00000377414.3,ENST00000474145.1,ENST00000479813.1	chr1	9101916:9101996:9107668:9107793:9117506:9117667,	9107669	9107793	9107790	9107790	Frame_Shift_Del	T	-	p.K99fs
LIHC	TCGA-G3-A3CJ-01	SLC25A33	ENST00000302692.6	chr1	9633403:9633470:9640011:9640292:9642356:9645237,	9640012	9640292	9640211	9640211	Frame_Shift_Del	A	-	p.K228fs
LIHC	TCGA-G3-A3CJ-01	UBE4B	ENST00000253251.8,ENST00000466379.1,ENST00000377157.3,ENST00000475795.1,ENST00000343090.6	chr1	10189449:10189506:10190557:10190674:10190772:10190871,	10190558	10190674	10190610	10190610	Frame_Shift_Del	G	-	p.R338fs
LIHC	TCGA-G3-A3CJ-01	UBE4B	ENST00000253251.8,ENST00000377157.3,ENST00000343090.6	chr1	10209241:10209340:10211383:10211619:10218413:10218540,	10211384	10211619	10211401	10211401	Frame_Shift_Del	T	-	p.L658fs
LIHC	TCGA-G3-A3CJ-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10384815:10384953:10386168:10386417:10394577:10394696,	10386169	10386417	10386222	10386222	Frame_Shift_Del	C	-	p.S910fs
LIHC	TCGA-G3-A3CJ-01	KIF1B	ENST00000377086.1,ENST00000377081.1,ENST00000263934.6	chr1	10397131:10397261:10397428:10397591:10399826:10399917,	10397429	10397591	10397476	10397476	Frame_Shift_Del	T	-	p.F1103fs
LIHC	TCGA-G3-A3CJ-01	MASP2	ENST00000400897.3	chr1	11103395:11103592:11105464:11105596:11106612:11106790,	11105465	11105596	11105569	11105569	Frame_Shift_Del	C	-	p.G147fs
LIHC	TCGA-G3-A3CJ-01	SRM	ENST00000376957.2	chr1	11114645:11114942:11115018:11115141:11115837:11115877,	11115019	11115141	11115122	11115122	Frame_Shift_Del	G	-	p.P262fs
LIHC	TCGA-G3-A3CJ-01	EXOSC10	ENST00000304457.7	chr1	11132143:11132228:11134287:11134383:11136898:11137005,	11134288	11134383	11134355	11134355	Frame_Shift_Del	C	-	p.G672fs
LIHC	TCGA-G3-A3CJ-01	EXOSC10	ENST00000544779.1,ENST00000304457.7,ENST00000474216.1,ENST00000376936.4	chr1	11137657:11137708:11139767:11139879:11140555:11140571,	11139768	11139879	11139836	11139836	Frame_Shift_Del	G	-	p.L561fs
LIHC	TCGA-G3-A3CJ-01	MTOR	ENST00000361445.4	chr1	11300359:11300604:11301609:11301738:11303170:11303357,	11301610	11301738	11301683	11301683	Frame_Shift_Del	C	-	p.A490fs
LIHC	TCGA-G3-A3CJ-01	AGTRAP	ENST00000491346.1	chr1	11805859:11805894:11805986:11806280:11807496:11807602,	11805987	11806280	11806206	11806206	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	AGTRAP	ENST00000476512.1	chr1	11805859:11805894:11806044:11806280:11807496:11807602,	11806045	11806280	11806206	11806206	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	AGTRAP	ENST00000376627.2,ENST00000452018.2,ENST00000400895.2,ENST00000476309.1	chr1	11805859:11805894:11806183:11806280:11807496:11807602,	11806184	11806280	11806206	11806206	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	PLOD1	ENST00000376369.3,ENST00000196061.4	chr1	12023588:12023693:12024231:12024357:12024700:12024842,	12024232	12024357	12024285	12024285	Frame_Shift_Del	G	-	p.W419fs
LIHC	TCGA-G3-A3CJ-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12065767:12065988:12066594:12066750:12067109:12067306,	12066595	12066750	12066637	12066637	Frame_Shift_Del	C	-	p.P588fs
LIHC	TCGA-G3-A3CJ-01	MIIP	ENST00000235332.4,ENST00000436478.2	chr1	12081701:12081897:12082151:12082499:12082889:12082974,	12082152	12082499	12082465	12082465	Frame_Shift_Del	G	-	p.R143fs
LIHC	TCGA-G3-A3CJ-01	VPS13D	ENST00000356315.4,ENST00000496628.1,ENST00000543766.1,ENST00000011700.6,ENST00000358136.3	chr1	12475139:12475274:12476712:12476880:12516053:12516127,	12476713	12476880	12476789	12476789	Frame_Shift_Del	T	-	p.V4081fs
LIHC	TCGA-G3-A3CJ-01	PRDM2	ENST00000484063.2	chr1	14057512:14057612:14059273:14059350:14068499:14068652,	14059274	14059350	14059336	14059336	Frame_Shift_Del	A	-	p.K65fs
LIHC	TCGA-G3-A3CJ-01	PRDM2	ENST00000376048.5,ENST00000235372.7,ENST00000311066.5	chr1	14057512:14057612:14059273:14059377:14068499:14068652,	14059274	14059377	14059336	14059336	Frame_Shift_Del	A	-	p.K65fs
LIHC	TCGA-G3-A3CJ-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14105018	14105018	Frame_Shift_Del	C	-	p.A243fs
LIHC	TCGA-G3-A3CJ-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107219	14107219	Frame_Shift_Del	C	-	p.P978fs
LIHC	TCGA-G3-A3CJ-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108392	14108392	Frame_Shift_Del	A	-	p.K1368fs
LIHC	TCGA-G3-A3CJ-01	FHAD1	ENST00000375995.3	chr1	15635108:15635232:15639552:15639683:15642873:15642963,15635108:15635232:15639552:15639683:15653554:15653638,	15639553	15639683	15639571	15639571	Frame_Shift_Del	A	-	p.Q353fs
LIHC	TCGA-G3-A3CJ-01	CTRC	ENST00000375949.4	chr1	15769913:15770050:15771100:15771246:15772091:15772244,	15771101	15771246	15771217	15771217	Frame_Shift_Del	G	-	p.G205fs
LIHC	TCGA-G3-A3CJ-01	AGMAT	ENST00000375826.3	chr1	15904179:15904359:15905353:15905549:15906588:15906637,	15905354	15905549	15905375	15905375	Frame_Shift_Del	G	-	p.P233fs
LIHC	TCGA-G3-A3CJ-01	DDI2	ENST00000486680.1,ENST00000480945.1	chr1	15953163:15953293:15956819:15957056:15959933:15960060,	15956820	15957056	15956922	15956922	Frame_Shift_Del	A	-	p.E124fs
LIHC	TCGA-G3-A3CJ-01	DDI2	ENST00000480945.1	chr1	15959933:15960060:15964801:15964929:15970016:15970145,	15964802	15964929	15964819	15964819	Frame_Shift_Del	A	-	p.E217fs
LIHC	TCGA-G3-A3CJ-01	PLEKHM2	ENST00000375799.3	chr1	16046228:16046415:16047823:16047883:16051811:16052040,	16047824	16047883	16047844	16047844	Frame_Shift_Del	T	-	p.F225fs
LIHC	TCGA-G3-A3CJ-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16091458:16091728:16093870:16094058:16095022:16095125,	16093871	16094058	16093879	16093879	Frame_Shift_Del	C	-	p.P90fs
LIHC	TCGA-G3-A3CJ-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16095022:16095125:16096903:16097073:16101112:16101126,	16096904	16097073	16096934	16096934	Frame_Shift_Del	C	-	p.S191fs
LIHC	TCGA-G3-A3CJ-01	SPEN	ENST00000442985.1,ENST00000375759.3	chr1	16245420:16245546:16245898:16246012:16247364:16247401,	16245899	16246012	16245998	16245998	Frame_Shift_Del	G	-	p.G541fs
LIHC	TCGA-G3-A3CJ-01	SPEN	ENST00000375759.3	chr1	16245898:16246012:16247364:16247478:16248743:16248844,	16247365	16247478	16247470	16247470	Frame_Shift_Del	A	-	p.K581fs
LIHC	TCGA-G3-A3CJ-01	CLCNKA	ENST00000464764.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4,ENST00000495784.1	chr1	16348546:16348558:16349107:16349214:16350294:16350409,	16349108	16349214	16349129	16349129	Frame_Shift_Del	G	-	p.V5fs
LIHC	TCGA-G3-A3CJ-01	CLCNKA	ENST00000491433.1,ENST00000464764.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4	chr1	16353804:16353930:16354315:16354400:16354512:16354614,	16354316	16354400	16354384	16354384	Frame_Shift_Del	T	-	p.F285fs
LIHC	TCGA-G3-A3CJ-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16377972:16378042:16378204:16378315:16378692:16378906,	16378205	16378315	16378251	16378251	Frame_Shift_Del	C	-	p.F448fs
LIHC	TCGA-G3-A3CJ-01	CLCNKB	ENST00000375679.4,ENST00000431772.1,ENST00000375667.3	chr1	16378817:16378906:16380133:16380267:16381929:16382018,	16380134	16380267	16380249	16380249	Frame_Shift_Del	C	-	p.P580fs
LIHC	TCGA-G3-A3CJ-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461054:16461062:16461530:16461684:16462149:16462265,	16461531	16461684	16461647	16461647	Frame_Shift_Del	C	-	p.G489fs
LIHC	TCGA-G3-A3CJ-01	FBXO42	ENST00000375592.3,ENST00000478089.1	chr1	16621277:16621412:16632297:16632414:16641663:16641862,	16632298	16632414	16632321	16632321	Frame_Shift_Del	G	-	p.P115fs
LIHC	TCGA-G3-A3CJ-01	SZRD1	ENST00000472461.1	chr1	16693759:16693803:16717869:16717919:16719725:16719815,16693759:16693803:16717869:16717919:16719722:16719815,16713549:16713620:16717869:16717919:16719722:16719850,16694205:16694510:16717869:16717919:16719725:16719977,	16717870	16717919	16717910	16717910	Frame_Shift_Del	A	-	p.Q31fs
LIHC	TCGA-G3-A3CJ-01	SPATA21	ENST00000466212.1	chr1	16737272:16737410:16748405:16748689:16752018:16752226,	16748406	16748689	16748411	16748411	Frame_Shift_Del	T	-	p.K30fs
LIHC	TCGA-G3-A3CJ-01	NECAP2	ENST00000406746.1,ENST00000457722.2,ENST00000504551.2,ENST00000513161.1,ENST00000492095.1,ENST00000337132.5	chr1	16775587:16775696:16778332:16778510:16785336:16785451,16775587:16775696:16778332:16778510:16782312:16782388,	16778333	16778510	16778470	16778470	Frame_Shift_Del	G	-	p.V209fs
LIHC	TCGA-G3-A3CJ-01	CROCC	ENST00000375541.5	chr1	17295610:17295835:17296279:17296429:17296747:17296948,	17296280	17296429	17296392	17296392	Frame_Shift_Del	G	-	p.R1805fs
LIHC	TCGA-G3-A3CJ-01	ATP13A2	ENST00000326735.8,ENST00000452699.1	chr1	17312475:17312853:17312957:17313127:17313299:17313370,	17312958	17313127	17312987	17312987	Frame_Shift_Del	G	-	p.L1121fs
LIHC	TCGA-G3-A3CJ-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000502860.1,ENST00000506174.1,ENST00000452699.1,ENST00000463860.1	chr1	17323514:17323670:17326505:17326637:17326740:17326786,	17326506	17326637	17326581	17326581	Frame_Shift_Del	G	-	p.Q317fs
LIHC	TCGA-G3-A3CJ-01	PADI1	ENST00000375471.4	chr1	17552527:17552653:17555119:17555292:17555442:17555546,	17555120	17555292	17555223	17555223	Frame_Shift_Del	G	-	p.E252fs
LIHC	TCGA-G3-A3CJ-01	PADI1	ENST00000537499.1,ENST00000375471.4,ENST00000413717.2	chr1	17563808:17563953:17565110:17565204:17566198:17566278,	17565111	17565204	17565183	17565183	Frame_Shift_Del	G	-	p.G511fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF10L	ENST00000361221.3,ENST00000469726.1,ENST00000375415.1,ENST00000375408.3,ENST00000434513.1,ENST00000475356.1,ENST00000167825.4,ENST00000452522.1	chr1	17983048:17983203:17990941:17991090:18014067:18014242,	17990942	17991090	17990992	17990992	Frame_Shift_Del	C	-	p.P971fs
LIHC	TCGA-G3-A3CJ-01	UBR4	ENST00000375226.2,ENST00000375254.3,ENST00000375267.2,ENST00000375217.2	chr1	19436873:19436958:19437235:19437326:19439017:19439181,	19437236	19437326	19437277	19437277	Frame_Shift_Del	C	-	p.V3951fs
LIHC	TCGA-G3-A3CJ-01	UBR4	ENST00000425413.1,ENST00000375254.3,ENST00000375267.2,ENST00000375217.2	chr1	19475056:19475120:19477070:19477287:19478136:19478194,	19477071	19477287	19477100	19477100	Frame_Shift_Del	G	-	p.P2467fs
LIHC	TCGA-G3-A3CJ-01	PLA2G2F	ENST00000375102.3	chr1	20466658:20466711:20469938:20470083:20471072:20471182,	20469939	20470083	20470048	20470048	Frame_Shift_Del	G	-	p.L93fs
LIHC	TCGA-G3-A3CJ-01	DDOST	ENST00000375048.3,ENST00000602624.2	chr1	20982168:20982272:20982593:20982680:20987373:20987484,	20982594	20982680	20982676	20982676	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-G3-A3CJ-01	KIF17	ENST00000375044.1,ENST00000247986.2,ENST00000400463.3	chr1	21012538:21012619:21013880:21014437:21016680:21016828,	21013881	21014437	21014349	21014349	Frame_Shift_Del	A	-	p.F490fs
LIHC	TCGA-G3-A3CJ-01	HP1BP3	ENST00000491748.1,ENST00000375003.2,ENST00000488722.1,ENST00000312239.5	chr1	21072084:21072149:21074036:21074148:21076215:21076240,	21074037	21074148	21074120	21074120	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-G3-A3CJ-01	EIF4G3	ENST00000537738.1,ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21155639:21155765:21167348:21167521:21175907:21176023,	21167349	21167521	21167355	21167355	Frame_Shift_Del	A	-	p.F1302fs
LIHC	TCGA-G3-A3CJ-01	EIF4G3	ENST00000602326.1,ENST00000400422.1,ENST00000264211.8,ENST00000374937.3	chr1	21231375:21231464:21267983:21268823:21295966:21296089,21231375:21231464:21267983:21268823:21276495:21276601,	21267984	21268823	21268781	21268781	Frame_Shift_Del	G	-	p.P239fs
LIHC	TCGA-G3-A3CJ-01	EIF4G3	ENST00000411888.1	chr1	21306826:21306941:21307540:21307720:21324093:21324126,21306826:21306941:21307540:21307720:21329205:21329280,21306826:21306941:21307540:21307720:21327691:21327805,	21307541	21307720	21307677	21307677	Frame_Shift_Del	G	-	p.P32fs
LIHC	TCGA-G3-A3CJ-01	EIF4G3	ENST00000411888.1	chr1	21306826:21306941:21307540:21307720:21324093:21324126,21306826:21306941:21307540:21307720:21329205:21329280,21306826:21306941:21307540:21307720:21327691:21327805,	21307541	21307720	21307682	21307682	Frame_Shift_Del	G	-	p.T30fs
LIHC	TCGA-G3-A3CJ-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000473505.1,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21586805:21586885:21599191:21599404:21605683:21605825,	21599192	21599404	21599244	21599244	Frame_Shift_Del	C	-	p.G131fs
LIHC	TCGA-G3-A3CJ-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000481130.2,ENST00000374893.6,ENST00000463334.2,ENST00000415912.2,ENST00000436918.2,ENST00000527991.1	chr1	21599327:21599404:21605683:21605825:21616562:21616649,	21605684	21605825	21605807	21605807	Frame_Shift_Del	G	-	p.R37fs
LIHC	TCGA-G3-A3CJ-01	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21936067:21936139:21936612:21936768:21937944:21938074,	21936613	21936768	21936621	21936621	Frame_Shift_Del	G	-	p.L331fs
LIHC	TCGA-G3-A3CJ-01	USP48	ENST00000529637.1,ENST00000464577.1,ENST00000308271.9	chr1	22016466:22016592:22021558:22021714:22027990:22028095,	22021559	22021714	22021607	22021607	Frame_Shift_Del	T	-	p.K945fs
LIHC	TCGA-G3-A3CJ-01	USP48	ENST00000529637.1	chr1	22032959:22033082:22033236:22033400:22041881:22041950,	22033237	22033400	22033370	22033370	Frame_Shift_Del	A	-	p.L664fs
LIHC	TCGA-G3-A3CJ-01	USP48	ENST00000421625.2,ENST00000400301.1,ENST00000308271.9	chr1	22055104:22055212:22056196:22056325:22062938:22063118,	22056197	22056325	22056297	22056297	Frame_Shift_Del	T	-	p.K400fs
LIHC	TCGA-G3-A3CJ-01	USP48	ENST00000529637.1	chr1	22055104:22055212:22056196:22056322:22062938:22063118,	22056197	22056322	22056297	22056297	Frame_Shift_Del	T	-	p.K400fs
LIHC	TCGA-G3-A3CJ-01	CDC42	ENST00000315554.8,ENST00000411827.1,ENST00000344548.3,ENST00000400259.1	chr1	22404921:22405076:22408214:22408287:22412931:22413041,	22408215	22408287	22408273	22408273	Frame_Shift_Del	T	-	p.L55fs
LIHC	TCGA-G3-A3CJ-01	ZBTB40	ENST00000374651.4,ENST00000375647.4,ENST00000404138.1	chr1	22832541:22832734:22834493:22834630:22835022:22835224,	22834494	22834630	22834529	22834529	Frame_Shift_Del	T	-	p.L466fs
LIHC	TCGA-G3-A3CJ-01	C1QA	ENST00000438241.1	chr1	22963254:22963353:22964102:22964272:22965325:22965654,	22964103	22964272	22964129	22964129	Frame_Shift_Del	G	-	p.W7fs
LIHC	TCGA-G3-A3CJ-01	KDM1A	ENST00000542151.1,ENST00000400181.4	chr1	23345987:23346440:23356961:23357127:23370919:23370979,	23356962	23357127	23357064	23357064	Frame_Shift_Del	C	-	p.P156fs
LIHC	TCGA-G3-A3CJ-01	HNRNPR	ENST00000374616.3,ENST00000302271.6,ENST00000374612.1,ENST00000478691.1,ENST00000476451.1	chr1	23648020:23648156:23650048:23650225:23664246:23664354,23648020:23648156:23650048:23650225:23660010:23660124,	23650049	23650225	23650210	23650210	Frame_Shift_Del	T	-	p.I71fs
LIHC	TCGA-G3-A3CJ-01	GALE	ENST00000418277.1,ENST00000374497.3,ENST00000481736.1,ENST00000459934.1,ENST00000429356.1	chr1	24123365:24123432:24123523:24123637:24124184:24124361,	24123524	24123637	24123609	24123609	Frame_Shift_Del	A	-	p.F186fs
LIHC	TCGA-G3-A3CJ-01	IFNLR1	ENST00000374421.3,ENST00000327575.2,ENST00000374418.3	chr1	24495906:24496091:24507220:24507344:24513680:24513738,	24507221	24507344	24507252	24507252	Frame_Shift_Del	G	-	p.Q51fs
LIHC	TCGA-G3-A3CJ-01	GRHL3	ENST00000342072.4,ENST00000236255.4,ENST00000361548.4,ENST00000356046.2,ENST00000350501.5,ENST00000528064.1	chr1	24662971:24663317:24663567:24663641:24664125:24664279,	24663568	24663641	24663607	24663607	Frame_Shift_Del	C	-	p.P219fs
LIHC	TCGA-G3-A3CJ-01	STPG1	ENST00000337248.4,ENST00000440416.1,ENST00000468303.1,ENST00000003583.8,ENST00000374409.1	chr1	24687340:24687531:24696163:24696329:24700191:24700300,	24696164	24696329	24696167	24696167	Frame_Shift_Del	A	-	p.F245fs
LIHC	TCGA-G3-A3CJ-01	STPG1	ENST00000337248.4,ENST00000468303.1,ENST00000435187.1,ENST00000374409.1	chr1	24706142:24706313:24710391:24710493:24727808:24727821,24706142:24706313:24710391:24710493:24718050:24718169,	24710392	24710493	24710483	24710483	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-G3-A3CJ-01	STPG1	ENST00000497384.1	chr1	24706142:24706313:24710356:24710493:24718050:24718169,	24710357	24710493	24710483	24710483	Frame_Shift_Del	G	-	p.P67fs
LIHC	TCGA-G3-A3CJ-01	RCAN3	ENST00000436717.2	chr1	24829386:24829640:24840803:24841057:24857707:24857881,	24840804	24841057	24841008	24841008	Frame_Shift_Del	T	-	p.L49fs
LIHC	TCGA-G3-A3CJ-01	RCAN3	ENST00000412742.2	chr1	24841020:24841057:24857707:24857881:24859572:24859744,24840862:24841057:24857707:24857881:24861582:24861769,	24857708	24857881	24857849	24857849	Frame_Shift_Del	A	-	p.N113fs
LIHC	TCGA-G3-A3CJ-01	CLIC4	ENST00000488683.1	chr1	25071899:25072116:25124232:25124342:25140584:25140710,	25124233	25124342	25124273	25124273	Frame_Shift_Del	C	-	p.S38fs
LIHC	TCGA-G3-A3CJ-01	CLIC4	ENST00000488683.1	chr1	25071899:25072116:25124232:25124342:25140584:25140710,	25124233	25124342	25124338	25124338	Frame_Shift_Del	A	-	p.K60fs
LIHC	TCGA-G3-A3CJ-01	SYF2	ENST00000236273.4	chr1	25554608:25554726:25555488:25555614:25558594:25558702,	25555489	25555614	25555600	25555600	Frame_Shift_Del	T	-	p.K49fs
LIHC	TCGA-G3-A3CJ-01	TMEM50A	ENST00000374358.4,ENST00000498135.1,ENST00000491936.1	chr1	25678116:25678184:25683283:25683344:25687150:25687458,25679372:25679465:25683283:25683344:25687150:25687458,	25683284	25683344	25683316	25683316	Frame_Shift_Del	T	-	p.F135fs
LIHC	TCGA-G3-A3CJ-01	TMEM50A	ENST00000374358.4,ENST00000498135.1,ENST00000491936.1	chr1	25678116:25678184:25683283:25683344:25687150:25687458,25679372:25679465:25683283:25683344:25687150:25687458,	25683284	25683344	25683337	25683337	Frame_Shift_Del	T	-	p.F142fs
LIHC	TCGA-G3-A3CJ-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889607	25889607	Frame_Shift_Del	G	-	p.L193fs
LIHC	TCGA-G3-A3CJ-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104629	26104629	Frame_Shift_Del	G	-	p.G432fs
LIHC	TCGA-G3-A3CJ-01	EXTL1	ENST00000374280.3	chr1	26357622:26357755:26357950:26358057:26358886:26358976,	26357951	26358057	26358007	26358007	Frame_Shift_Del	C	-	p.P432fs
LIHC	TCGA-G3-A3CJ-01	CEP85	ENST00000252992.4,ENST00000476272.2	chr1	26566252:26566329:26570656:26570809:26581661:26581841,	26570657	26570809	26570767	26570767	Frame_Shift_Del	G	-	p.G56fs
LIHC	TCGA-G3-A3CJ-01	CEP85	ENST00000252992.4,ENST00000476272.2	chr1	26570656:26570809:26581661:26582356:26584087:26584221,	26581662	26582356	26582043	26582043	Frame_Shift_Del	T	-	p.L197fs
LIHC	TCGA-G3-A3CJ-01	UBXN11	ENST00000314675.7	chr1	26624485:26624553:26627416:26627515:26628184:26628213,26612433:26612528:26627416:26627515:26628184:26628213,	26627417	26627515	26627470	26627470	Frame_Shift_Del	T	-	p.K49fs
LIHC	TCGA-G3-A3CJ-01	UBXN11	ENST00000423664.1,ENST00000374215.1	chr1	26624485:26624553:26627416:26627544:26628184:26628213,	26627417	26627544	26627470	26627470	Frame_Shift_Del	T	-	p.K49fs
LIHC	TCGA-G3-A3CJ-01	ZNF683	ENST00000349618.3,ENST00000374204.1,ENST00000403843.1,ENST00000436292.1	chr1	26689516:26689645:26691022:26691717:26694083:26694138,	26691023	26691717	26691515	26691515	Frame_Shift_Del	G	-	p.P174fs
LIHC	TCGA-G3-A3CJ-01	ZNF683	ENST00000454975.1	chr1	26691470:26691717:26694083:26694138:26694948:26695073,	26694084	26694138	26694125	26694125	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-G3-A3CJ-01	ZNF683	ENST00000349618.3,ENST00000374204.1,ENST00000403843.1,ENST00000451801.1,ENST00000423508.1,ENST00000455900.1,ENST00000416125.1,ENST00000436292.1	chr1	26691470:26691717:26694083:26694288:26694948:26695073,	26694084	26694288	26694125	26694125	Frame_Shift_Del	C	-	p.G93fs
LIHC	TCGA-G3-A3CJ-01	RPS6KA1	ENST00000374163.1,ENST00000530003.1,ENST00000526792.1,ENST00000531113.1,ENST00000531382.1,ENST00000374168.2,ENST00000374166.4,ENST00000374162.2	chr1	26885297:26885428:26887216:26887342:26887535:26887625,	26887217	26887342	26887239	26887239	Frame_Shift_Del	T	-	p.V413fs
LIHC	TCGA-G3-A3CJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27100946	27100946	Frame_Shift_Del	C	-	p.P1410fs
LIHC	TCGA-G3-A3CJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101268	27101268	Frame_Shift_Del	C	-	p.A1517fs
LIHC	TCGA-G3-A3CJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101438	27101438	Frame_Shift_Del	C	-	p.P1576fs
LIHC	TCGA-G3-A3CJ-01	GPATCH3	ENST00000361720.5	chr1	27219879:27219939:27220726:27220901:27223791:27224216,	27220727	27220901	27220888	27220888	Frame_Shift_Del	C	-	p.G297fs
LIHC	TCGA-G3-A3CJ-01	NUDC	ENST00000321265.5	chr1	27271880:27271964:27272058:27272177:27272620:27272675,	27272059	27272177	27272130	27272130	Frame_Shift_Del	G	-	p.M299fs
LIHC	TCGA-G3-A3CJ-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440668	27440668	Frame_Shift_Del	G	-	p.P154fs
LIHC	TCGA-G3-A3CJ-01	CD164L2	ENST00000374027.3,ENST00000374030.1	chr1	27706540:27706685:27708269:27708314:27708817:27708889,	27708270	27708314	27708298	27708298	Frame_Shift_Del	G	-	p.P115fs
LIHC	TCGA-G3-A3CJ-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876439	27876439	Frame_Shift_Del	C	-	p.E730fs
LIHC	TCGA-G3-A3CJ-01	FGR	ENST00000374005.3,ENST00000374004.1,ENST00000399173.1,ENST00000545953.1,ENST00000374003.3,ENST00000457296.1	chr1	27948163:27948168:27949552:27949655:27950201:27950440,	27949553	27949655	27949629	27949629	Frame_Shift_Del	G	-	p.L85fs
LIHC	TCGA-G3-A3CJ-01	PPP1R8	ENST00000431586.1,ENST00000311772.5,ENST00000373931.4	chr1	28165287:28165363:28167524:28167745:28169696:28169841,	28167525	28167745	28167706	28167706	Frame_Shift_Del	G	-	p.K9fs
LIHC	TCGA-G3-A3CJ-01	RPA2	ENST00000373909.3	chr1	28233691:28233793:28240573:28240680:28241137:28241257,	28240574	28240680	28240644	28240644	Frame_Shift_Del	C	-	p.G16fs
LIHC	TCGA-G3-A3CJ-01	PHACTR4	ENST00000493669.1,ENST00000463428.1,ENST00000373836.3,ENST00000373839.3	chr1	28785595:28785769:28786722:28786803:28792195:28792360,	28786723	28786803	28786770	28786770	Frame_Shift_Del	A	-	p.K80fs
LIHC	TCGA-G3-A3CJ-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792195:28792360:28792892:28793279:28800065:28800663,	28792893	28793279	28792946	28792946	Frame_Shift_Del	C	-	p.P164fs
LIHC	TCGA-G3-A3CJ-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792195:28792360:28792892:28793279:28800065:28800663,	28792893	28793279	28793240	28793240	Frame_Shift_Del	C	-	p.P263fs
LIHC	TCGA-G3-A3CJ-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792195:28792360:28792892:28793279:28800065:28800663,	28792893	28793279	28793269	28793269	Frame_Shift_Del	C	-	p.N271fs
LIHC	TCGA-G3-A3CJ-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800114	28800114	Frame_Shift_Del	C	-	p.S291fs
LIHC	TCGA-G3-A3CJ-01	TAF12	ENST00000495422.1,ENST00000373824.4,ENST00000263974.4	chr1	28939758:28939873:28944464:28944542:28948425:28948677,	28944465	28944542	28944504	28944504	Frame_Shift_Del	T	-	p.E69fs
LIHC	TCGA-G3-A3CJ-01	TAF12	ENST00000373824.4	chr1	28944464:28944542:28948425:28948677:28969503:28969578,	28948426	28948677	28948576	28948576	Frame_Shift_Del	G	-	p.P6fs
LIHC	TCGA-G3-A3CJ-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069155	29069155	Frame_Shift_Del	T	-	p.F125fs
LIHC	TCGA-G3-A3CJ-01	EPB41	ENST00000398863.2,ENST00000373797.1,ENST00000343067.4,ENST00000349460.4,ENST00000373800.3,ENST00000373798.1,ENST00000356093.2	chr1	29323726:29323831:29338376:29338419:29342203:29342279,	29338377	29338419	29338403	29338403	Frame_Shift_Del	A	-	p.I271fs
LIHC	TCGA-G3-A3CJ-01	SRSF4	ENST00000466448.1	chr1	29476614:29476704:29481207:29481422:29485885:29485998,29475528:29475738:29481207:29481422:29485885:29485998,	29481208	29481422	29481271	29481271	Frame_Shift_Del	A	-	p.L172fs
LIHC	TCGA-G3-A3CJ-01	SRSF4	ENST00000466448.1	chr1	29476614:29476704:29481207:29481422:29485885:29485998,29475528:29475738:29481207:29481422:29485885:29485998,	29481208	29481422	29481373	29481373	Frame_Shift_Del	C	-	p.G138fs
LIHC	TCGA-G3-A3CJ-01	MECR	ENST00000473030.1,ENST00000490529.1	chr1	29527027:29527101:29528454:29528557:29533273:29533340,	29528455	29528557	29528514	29528514	Frame_Shift_Del	C	-	p.A157fs
LIHC	TCGA-G3-A3CJ-01	PUM1	ENST00000257075.5,ENST00000525843.1,ENST00000373742.2,ENST00000424085.2	chr1	31414844:31414970:31418192:31418330:31422973:31423108,31413997:31414119:31418192:31418330:31422973:31423108,31414844:31414970:31418192:31418330:31422979:31423108,	31418193	31418330	31418315	31418315	Frame_Shift_Del	C	-	p.E959fs
LIHC	TCGA-G3-A3CJ-01	FABP3	ENST00000497275.1,ENST00000373713.2,ENST00000482018.1	chr1	31838737:31838786:31840239:31840341:31842231:31842404,	31840240	31840341	31840249	31840249	Frame_Shift_Del	T	-	p.K113fs
LIHC	TCGA-G3-A3CJ-01	COL16A1	ENST00000271069.6,ENST00000373668.3,ENST00000373672.3	chr1	32162820:32162901:32163506:32163773:32164083:32164207,	32163507	32163773	32163579	32163579	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-G3-A3CJ-01	SPOCD1	ENST00000360482.2,ENST00000373648.2	chr1	32256580:32256853:32257815:32258002:32258278:32258368,32256024:32256892:32257815:32258002:32258278:32258368,	32257816	32258002	32257966	32257966	Frame_Shift_Del	G	-	p.R938fs
LIHC	TCGA-G3-A3CJ-01	PTP4A2	ENST00000344035.6,ENST00000602683.1	chr1	32375669:32375713:32381495:32381588:32384570:32384710,32374439:32374561:32381495:32381588:32384570:32384710,32377296:32377427:32381495:32381588:32384570:32384653,	32381496	32381588	32381514	32381514	Frame_Shift_Del	T	-	p.K57fs
LIHC	TCGA-G3-A3CJ-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503533	32503533	Frame_Shift_Del	C	-	p.P337fs
LIHC	TCGA-G3-A3CJ-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503533	32503533	Frame_Shift_Del	C	-	p.P337fs
LIHC	TCGA-G3-A3CJ-01	TMEM39B	ENST00000476968.1,ENST00000472503.1,ENST00000427288.1,ENST00000336294.5,ENST00000498613.1,ENST00000468135.1,ENST00000487305.1,ENST00000466321.1	chr1	32541267:32541423:32542764:32542919:32557275:32557345,32542363:32542447:32542764:32542919:32557275:32557345,	32542765	32542919	32542775	32542775	Frame_Shift_Del	G	-	p.R34fs
LIHC	TCGA-G3-A3CJ-01	DCDC2B	ENST00000409358.1	chr1	32677361:32677438:32677670:32677802:32678090:32678237,	32677671	32677802	32677684	32677684	Frame_Shift_Del	G	-	p.G137fs
LIHC	TCGA-G3-A3CJ-01	DCDC2B	ENST00000409358.1	chr1	32677361:32677438:32677670:32677802:32678090:32678237,	32677671	32677802	32677699	32677699	Frame_Shift_Del	C	-	p.P143fs
LIHC	TCGA-G3-A3CJ-01	EIF3I	ENST00000373586.1,ENST00000483517.1,ENST00000474371.1	chr1	32694099:32694210:32694327:32694417:32694735:32694809,	32694328	32694417	32694401	32694401	Frame_Shift_Del	C	-	p.S238fs
LIHC	TCGA-G3-A3CJ-01	ZBTB8OS	ENST00000483138.1	chr1	33093108:33093145:33097427:33097480:33099245:33099270,33093108:33093145:33097427:33097480:33097808:33097922,33093377:33093466:33097427:33097480:33099245:33099275,	33097428	33097480	33097432	33097432	Frame_Shift_Del	T	-	p.I138fs
LIHC	TCGA-G3-A3CJ-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33235721	33235721	Frame_Shift_Del	C	-	p.A314fs
LIHC	TCGA-G3-A3CJ-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237100	33237100	Frame_Shift_Del	C	-	p.P775fs
LIHC	TCGA-G3-A3CJ-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237388	33237388	Frame_Shift_Del	C	-	p.P870fs
LIHC	TCGA-G3-A3CJ-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237814	33237814	Frame_Shift_Del	C	-	p.P1012fs
LIHC	TCGA-G3-A3CJ-01	RNF19B	ENST00000235150.4,ENST00000356990.5,ENST00000373456.7	chr1	33403997:33404129:33407852:33408060:33409619:33409760,	33407853	33408060	33407861	33407861	Frame_Shift_Del	T	-	p.K534fs
LIHC	TCGA-G3-A3CJ-01	RNF19B	ENST00000235150.4,ENST00000356990.5,ENST00000373456.7	chr1	33407852:33408060:33409619:33409760:33411114:33411229,	33409620	33409760	33409663	33409663	Frame_Shift_Del	T	-	p.K453fs
LIHC	TCGA-G3-A3CJ-01	RNF19B	ENST00000235150.4,ENST00000356990.5	chr1	33413822:33413964:33415169:33415375:33429651:33430286,	33415170	33415375	33415236	33415236	Frame_Shift_Del	C	-	p.A259fs
LIHC	TCGA-G3-A3CJ-01	ZMYM1	ENST00000359858.4,ENST00000417119.1,ENST00000476269.1,ENST00000373330.1,ENST00000488455.1	chr1	35544991:35545043:35561419:35561492:35562917:35563079,35559514:35559610:35561419:35561492:35562917:35563079,35559514:35559684:35561419:35561492:35562917:35563079,	35561420	35561492	35561465	35561465	Frame_Shift_Del	A	-	p.K48fs
LIHC	TCGA-G3-A3CJ-01	ZMYM4	ENST00000314607.6	chr1	35846859:35847034:35847146:35847359:35851042:35851193,	35847147	35847359	35847276	35847276	Frame_Shift_Del	G	-	p.G496fs
LIHC	TCGA-G3-A3CJ-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2	chr1	35908506:35908629:35909761:35909904:35913773:35913800,	35909762	35909904	35909867	35909867	Frame_Shift_Del	G	-	p.H851fs
LIHC	TCGA-G3-A3CJ-01	KIAA0319L	ENST00000473844.1,ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2	chr1	35909765:35909904:35913773:35913933:35915467:35915549,	35913774	35913933	35913921	35913921	Frame_Shift_Del	T	-	p.N790fs
LIHC	TCGA-G3-A3CJ-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2,ENST00000492544.1	chr1	35915965:35916110:35917228:35917377:35919157:35919290,	35917229	35917377	35917364	35917364	Frame_Shift_Del	C	-	p.V643fs
LIHC	TCGA-G3-A3CJ-01	KIAA0319L	ENST00000325722.3,ENST00000482929.2,ENST00000426982.2,ENST00000478463.2,ENST00000440579.1,ENST00000469892.1	chr1	35944660:35944813:35972212:35972736:36019950:36020120,	35972213	35972736	35972667	35972667	Frame_Shift_Del	T	-	p.N71fs
LIHC	TCGA-G3-A3CJ-01	KIAA0319L	ENST00000426982.2	chr1	35972339:35972736:36019950:36020120:36022962:36023004,35972212:35972736:36019950:36020120:36023150:36023213,	36019951	36020120	36019978	36019978	Frame_Shift_Del	A	-	p.C39fs
LIHC	TCGA-G3-A3CJ-01	PSMB2	ENST00000373237.3	chr1	36070833:36070883:36074846:36075009:36096874:36096945,	36074847	36075009	36074912	36074912	Frame_Shift_Del	G	-	p.P128fs
LIHC	TCGA-G3-A3CJ-01	AGO3	ENST00000373191.4,ENST00000246314.6	chr1	36479515:36479649:36492714:36492899:36499774:36499934,	36492715	36492899	36492847	36492847	Frame_Shift_Del	T	-	p.Y513fs
LIHC	TCGA-G3-A3CJ-01	AGO3	ENST00000373191.4,ENST00000246314.6	chr1	36505390:36505585:36505907:36506042:36509047:36509149,	36505908	36506042	36506019	36506019	Frame_Shift_Del	T	-	p.F717fs
LIHC	TCGA-G3-A3CJ-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752411	36752411	Frame_Shift_Del	G	-	p.G194fs
LIHC	TCGA-G3-A3CJ-01	CSF3R	ENST00000373104.1,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000418048.2,ENST00000361632.4	chr1	36939364:36939488:36940977:36941274:36945033:36945097,	36940978	36941274	36941221	36941221	Frame_Shift_Del	C	-	p.D40fs
LIHC	TCGA-G3-A3CJ-01	GRIK3	ENST00000373091.3	chr1	37261127:37267646:37270587:37270838:37271704:37271927,	37270588	37270838	37270724	37270724	Frame_Shift_Del	T	-	p.N810fs
LIHC	TCGA-G3-A3CJ-01	MEAF6	ENST00000448519.2,ENST00000296214.5,ENST00000373073.4,ENST00000487788.1,ENST00000475828.1	chr1	37975055:37975143:37979023:37979139:37980257:37980333,	37979024	37979139	37979096	37979096	Frame_Shift_Del	C	-	p.G45fs
LIHC	TCGA-G3-A3CJ-01	DNALI1	ENST00000541606.1,ENST00000466723.1	chr1	38024927:38025097:38027157:38027336:38027681:38027789,38023203:38023349:38027157:38027336:38027681:38027789,	38027158	38027336	38027312	38027312	Frame_Shift_Del	G	-	p.Q206fs
LIHC	TCGA-G3-A3CJ-01	MTF1	ENST00000373036.4	chr1	38275238:38281238:38283090:38283154:38287792:38288388,	38283091	38283154	38283122	38283122	Frame_Shift_Del	A	-	p.F600fs
LIHC	TCGA-G3-A3CJ-01	AKIRIN1	ENST00000432648.3	chr1	39457167:39457272:39466643:39466778:39469018:39469090,39463842:39463983:39466643:39466778:39469018:39469090,	39466644	39466778	39466658	39466658	Frame_Shift_Del	A	-	p.K127fs
LIHC	TCGA-G3-A3CJ-01	AKIRIN1	ENST00000432648.3	chr1	39457167:39457272:39466643:39466778:39469018:39469090,39463842:39463983:39466643:39466778:39469018:39469090,	39466644	39466778	39466769	39466769	Frame_Shift_Del	A	-	p.K163fs
LIHC	TCGA-G3-A3CJ-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39796926	39796926	Frame_Shift_Del	C	-	p.P1556fs
LIHC	TCGA-G3-A3CJ-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798336	39798336	Frame_Shift_Del	A	-	p.K2026fs
LIHC	TCGA-G3-A3CJ-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798762	39798762	Frame_Shift_Del	T	-	p.F2168fs
LIHC	TCGA-G3-A3CJ-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800289	39800289	Frame_Shift_Del	T	-	p.F2677fs
LIHC	TCGA-G3-A3CJ-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39801005	39801005	Frame_Shift_Del	A	-	p.T2915fs
LIHC	TCGA-G3-A3CJ-01	MACF1	ENST00000289893.4,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000564288.1	chr1	39893212:39893286:39893632:39893959:39894913:39894998,	39893633	39893959	39893805	39893805	Frame_Shift_Del	C	-	p.A5550fs
LIHC	TCGA-G3-A3CJ-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39903448:39903680:39904945:39905172:39906674:39906797,	39904946	39905172	39905015	39905015	Frame_Shift_Del	A	-	p.E6097fs
LIHC	TCGA-G3-A3CJ-01	PPIE	ENST00000372830.1	chr1	40218581:40218724:40228188:40228323:40229360:40229586,	40228189	40228323	40228264	40228264	Frame_Shift_Del	A	-	p.K305fs
LIHC	TCGA-G3-A3CJ-01	TRIT1	ENST00000495175.2,ENST00000441669.2,ENST00000316891.5,ENST00000492612.2,ENST00000545233.1	chr1	40310202:40310312:40312891:40312969:40348989:40349152,40310202:40310312:40312891:40312969:40313219:40313328,	40312892	40312969	40312906	40312906	Frame_Shift_Del	T	-	p.N331fs
LIHC	TCGA-G3-A3CJ-01	TRIT1	ENST00000495175.2,ENST00000441669.2,ENST00000316891.5,ENST00000492612.2,ENST00000545233.1	chr1	40310202:40310312:40312891:40312969:40348989:40349152,40310202:40310312:40312891:40312969:40313219:40313328,	40312892	40312969	40312926	40312926	Frame_Shift_Del	T	-	p.K324fs
LIHC	TCGA-G3-A3CJ-01	TRIT1	ENST00000462797.1,ENST00000372818.1,ENST00000316891.5,ENST00000469476.2	chr1	40315794:40315933:40318402:40318548:40319641:40319740,	40318403	40318548	40318446	40318446	Frame_Shift_Del	T	-	p.M173fs
LIHC	TCGA-G3-A3CJ-01	MFSD2A	ENST00000483824.1	chr1	40420829:40421057:40422758:40422893:40424372:40424497,	40422759	40422893	40422819	40422819	Frame_Shift_Del	G	-	p.G53fs
LIHC	TCGA-G3-A3CJ-01	KCNQ4	ENST00000509682.2	chr1	41285836:41285932:41287985:41288074:41296755:41296976,	41287986	41288074	41288027	41288027	Frame_Shift_Del	C	-	p.Y361fs
LIHC	TCGA-G3-A3CJ-01	SCMH1	ENST00000326197.7,ENST00000372595.1,ENST00000402904.2,ENST00000361705.3,ENST00000397174.2,ENST00000397171.2,ENST00000361191.5,ENST00000372597.1,ENST00000372596.1,ENST00000337495.5	chr1	41536266:41536393:41540890:41541123:41608549:41608784,41536266:41536393:41540890:41541123:41578954:41579198,	41540891	41541123	41541075	41541075	Frame_Shift_Del	T	-	p.K255fs
LIHC	TCGA-G3-A3CJ-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42047305	42047305	Frame_Shift_Del	G	-	p.P1055fs
LIHC	TCGA-G3-A3CJ-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42047974	42047974	Frame_Shift_Del	G	-	p.P833fs
LIHC	TCGA-G3-A3CJ-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048447	42048447	Frame_Shift_Del	G	-	p.P674fs
LIHC	TCGA-G3-A3CJ-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048636	42048636	Frame_Shift_Del	T	-	p.K611fs
LIHC	TCGA-G3-A3CJ-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42050356	42050356	Frame_Shift_Del	G	-	p.P38fs
LIHC	TCGA-G3-A3CJ-01	CCDC30	ENST00000342022.4,ENST00000390640.4,ENST00000507855.1,ENST00000340612.4,ENST00000477155.1,ENST00000428554.2,ENST00000471390.1	chr1	43076648:43076761:43102907:43103049:43108143:43108280,	43102908	43103049	43102934	43102934	Frame_Shift_Del	A	-	p.Q508fs
LIHC	TCGA-G3-A3CJ-01	PPIH	ENST00000372550.1,ENST00000455203.2,ENST00000440068.1,ENST00000304979.3	chr1	43125192:43125237:43126532:43126575:43130533:43130626,	43126533	43126575	43126566	43126566	Frame_Shift_Del	T	-	p.D35fs
LIHC	TCGA-G3-A3CJ-01	FAM183A	ENST00000409396.1	chr1	43616431:43616491:43618498:43618650:43621876:43621950,	43618499	43618650	43618529	43618529	Frame_Shift_Del	C	-	p.A47fs
LIHC	TCGA-G3-A3CJ-01	FAM183A	ENST00000410048.1,ENST00000335282.4,ENST00000410025.1	chr1	43616431:43616491:43618498:43618602:43621876:43621950,	43618499	43618602	43618529	43618529	Frame_Shift_Del	C	-	p.A47fs
LIHC	TCGA-G3-A3CJ-01	EBNA1BP2	ENST00000236051.2,ENST00000463906.1,ENST00000431635.2	chr1	43630016:43630164:43630313:43630476:43632496:43632590,	43630314	43630476	43630450	43630450	Frame_Shift_Del	T	-	p.N300fs
LIHC	TCGA-G3-A3CJ-01	TIE1	ENST00000538015.1,ENST00000372476.3,ENST00000441333.2	chr1	43772510:43772666:43772812:43772944:43773102:43773243,	43772813	43772944	43772910	43772910	Frame_Shift_Del	C	-	p.C246fs
LIHC	TCGA-G3-A3CJ-01	TIE1	ENST00000372476.3	chr1	43773102:43773243:43773466:43773595:43774656:43774716,	43773467	43773595	43773558	43773558	Frame_Shift_Del	C	-	p.C335fs
LIHC	TCGA-G3-A3CJ-01	CDC20	ENST00000310955.6,ENST00000372462.1	chr1	43826403:43826632:43826790:43826916:43827865:43827983,	43826791	43826916	43826881	43826881	Frame_Shift_Del	G	-	p.G390fs
LIHC	TCGA-G3-A3CJ-01	ELOVL1	ENST00000470769.1,ENST00000413844.2,ENST00000487209.1,ENST00000482302.1,ENST00000497569.1,ENST00000372458.3,ENST00000497050.1	chr1	43829720:43829808:43829994:43830131:43830285:43830318,43829720:43829808:43829994:43830131:43830212:43830318,	43829995	43830131	43830116	43830116	Frame_Shift_Del	A	-	p.F166fs
LIHC	TCGA-G3-A3CJ-01	SZT2	ENST00000470139.1,ENST00000562955.1,ENST00000372442.1	chr1	43892385:43892480:43892726:43892850:43892951:43893116,	43892727	43892850	43892772	43892772	Frame_Shift_Del	C	-	p.P1063fs
LIHC	TCGA-G3-A3CJ-01	PTPRF	ENST00000372413.3,ENST00000372414.3,ENST00000438120.1,ENST00000359947.4	chr1	44044480:44044591:44054401:44054671:44056642:44056789,	44054402	44054671	44054416	44054416	Frame_Shift_Del	C	-	p.P232fs
LIHC	TCGA-G3-A3CJ-01	ST3GAL3	ENST00000545417.1,ENST00000347631.2,ENST00000262915.3,ENST00000461066.2	chr1	44173313:44173364:44201903:44202096:44257772:44257820,	44201904	44202096	44202075	44202075	Frame_Shift_Del	C	-	p.P48fs
LIHC	TCGA-G3-A3CJ-01	DPH2	ENST00000495421.1,ENST00000255108.3	chr1	44436267:44436489:44436637:44436861:44437058:44437198,44436267:44436380:44436637:44436861:44437829:44438006,44436267:44436380:44436637:44436861:44437058:44437086,	44436638	44436861	44436692	44436692	Frame_Shift_Del	T	-	p.H105fs
LIHC	TCGA-G3-A3CJ-01	DPH2	ENST00000492306.1	chr1	44436267:44436380:44436577:44436861:44437058:44437086,	44436578	44436861	44436692	44436692	Frame_Shift_Del	T	-	p.H105fs
LIHC	TCGA-G3-A3CJ-01	DPH2	ENST00000529729.1	chr1	44436267:44436380:44436637:44436892:44437058:44437129,	44436638	44436892	44436692	44436692	Frame_Shift_Del	T	-	p.H105fs
LIHC	TCGA-G3-A3CJ-01	DPH2	ENST00000495421.1,ENST00000255108.3	chr1	44436267:44436380:44437058:44437742:44437829:44438006,44436785:44436861:44437058:44437742:44437829:44438006,	44437059	44437742	44437183	44437183	Frame_Shift_Del	C	-	p.F203fs
LIHC	TCGA-G3-A3CJ-01	DPH2	ENST00000495421.1,ENST00000255108.3	chr1	44436267:44436380:44437058:44437742:44437829:44438006,44436785:44436861:44437058:44437742:44437829:44438006,	44437059	44437742	44437557	44437557	Frame_Shift_Del	C	-	p.A328fs
LIHC	TCGA-G3-A3CJ-01	DPH2	ENST00000459879.1	chr1	44436785:44436861:44437331:44437742:44437829:44438006,	44437332	44437742	44437557	44437557	Frame_Shift_Del	C	-	p.A328fs
LIHC	TCGA-G3-A3CJ-01	SLC6A9	ENST00000372310.3,ENST00000360584.2,ENST00000475075.2,ENST00000357730.2	chr1	44463199:44463411:44463526:44463697:44466438:44466474,	44463527	44463697	44463577	44463577	Frame_Shift_Del	G	-	p.L553fs
LIHC	TCGA-G3-A3CJ-01	SLC6A9	ENST00000537678.1	chr1	44474268:44474295:44475636:44475768:44489919:44490034,	44475637	44475768	44475647	44475647	Frame_Shift_Del	G	-	p.P103fs
LIHC	TCGA-G3-A3CJ-01	SLC6A9	ENST00000466926.1	chr1	44476480:44476554:44477232:44477394:44482718:44482811,44476480:44476554:44477232:44477394:44489919:44490034,	44477233	44477394	44477349	44477349	Frame_Shift_Del	A	-	p.S45fs
LIHC	TCGA-G3-A3CJ-01	KIF2C	ENST00000372222.3,ENST00000372224.4,ENST00000372217.1,ENST00000372218.4	chr1	45228216:45228330:45232497:45232621:45232768:45232880,	45232498	45232621	45232561	45232561	Frame_Shift_Del	T	-	p.F625fs
LIHC	TCGA-G3-A3CJ-01	PLK3	ENST00000465443.1,ENST00000372201.4	chr1	45268626:45268825:45268939:45269063:45269271:45269293,	45268940	45269063	45268997	45268997	Frame_Shift_Del	C	-	p.P337fs
LIHC	TCGA-G3-A3CJ-01	PTCH2	ENST00000372192.3,ENST00000447098.2	chr1	45295580:45295702:45296519:45296715:45297377:45297469,	45296520	45296715	45296538	45296538	Frame_Shift_Del	G	-	p.P265fs
LIHC	TCGA-G3-A3CJ-01	TESK2	ENST00000538496.1,ENST00000486676.1,ENST00000372084.1,ENST00000372086.3,ENST00000341771.6	chr1	45813280:45813365:45813589:45813672:45820974:45821121,	45813590	45813672	45813619	45813619	Frame_Shift_Del	A	-	p.F198fs
LIHC	TCGA-G3-A3CJ-01	PRDX1	ENST00000319248.8	chr1	45981325:45981479:45984609:45984726:45987500:45987526,	45984610	45984726	45984702	45984702	Frame_Shift_Del	T	-	p.N5fs
LIHC	TCGA-G3-A3CJ-01	AKR1A1	ENST00000351829.4,ENST00000372070.3,ENST00000487654.1	chr1	46033838:46033849:46034156:46034356:46034598:46034671,	46034157	46034356	46034320	46034320	Frame_Shift_Del	A	-	p.E239fs
LIHC	TCGA-G3-A3CJ-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120968	46120968	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-G3-A3CJ-01	MAST2	ENST00000372008.2	chr1	46379259:46379386:46383010:46383205:46425057:46425149,	46383011	46383205	46383116	46383116	Frame_Shift_Del	T	-	p.A22fs
LIHC	TCGA-G3-A3CJ-01	MAST2	ENST00000372008.2,ENST00000361297.2	chr1	46476401:46476611:46485267:46485369:46487621:46487754,	46485268	46485369	46485345	46485345	Frame_Shift_Del	C	-	p.R422fs
LIHC	TCGA-G3-A3CJ-01	PIK3R3	ENST00000262741.5,ENST00000354242.4,ENST00000488808.1,ENST00000540385.1,ENST00000372006.1,ENST00000340332.6,ENST00000420542.1,ENST00000423209.1	chr1	46509333:46509543:46511589:46511760:46512222:46512297,	46511590	46511760	46511708	46511708	Frame_Shift_Del	T	-	p.T357fs
LIHC	TCGA-G3-A3CJ-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521585	46521585	Frame_Shift_Del	T	-	p.M275fs
LIHC	TCGA-G3-A3CJ-01	PIK3R3	ENST00000493202.1,ENST00000262741.5,ENST00000354242.4,ENST00000540385.1,ENST00000372006.1,ENST00000340332.6,ENST00000425892.1,ENST00000420542.1,ENST00000423209.1	chr1	46531727:46531851:46532582:46532763:46543186:46543281,	46532583	46532763	46532743	46532743	Frame_Shift_Del	A	-	p.L112fs
LIHC	TCGA-G3-A3CJ-01	PIK3R3	ENST00000354242.4,ENST00000372006.1,ENST00000425892.1,ENST00000420542.1,ENST00000423209.1	chr1	46543186:46543285:46546313:46546422:46597518:46597628,	46546314	46546422	46546407	46546407	Frame_Shift_Del	G	-	p.P42fs
LIHC	TCGA-G3-A3CJ-01	PIK3R3	ENST00000354242.4,ENST00000372006.1,ENST00000425892.1,ENST00000420542.1,ENST00000423209.1	chr1	46543186:46543285:46546313:46546422:46597518:46597628,	46546314	46546422	46546410	46546410	Frame_Shift_Del	T	-	p.K40fs
LIHC	TCGA-G3-A3CJ-01	LRRC41	ENST00000472710.1,ENST00000496156.1,ENST00000343304.6	chr1	46745163:46745286:46745863:46745962:46746067:46746232,	46745864	46745962	46745887	46745887	Frame_Shift_Del	A	-	p.L667fs
LIHC	TCGA-G3-A3CJ-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746067:46746232:46746796:46747057:46751033:46752171,	46746797	46747057	46746829	46746829	Frame_Shift_Del	G	-	p.P575fs
LIHC	TCGA-G3-A3CJ-01	FAAH	ENST00000243167.8	chr1	46871394:46871466:46871709:46871750:46871915:46872040,	46871710	46871750	46871723	46871723	Frame_Shift_Del	A	-	p.K267fs
LIHC	TCGA-G3-A3CJ-01	FAAH	ENST00000243167.8	chr1	46877814:46877923:46878746:46878892:46879118:46879517,	46878747	46878892	46878794	46878794	Frame_Shift_Del	G	-	p.G505fs
LIHC	TCGA-G3-A3CJ-01	EFCAB14	ENST00000371933.3	chr1	47173577:47173723:47181966:47182115:47183574:47184736,	47181967	47182115	47181994	47181994	Frame_Shift_Del	C	-	p.D103fs
LIHC	TCGA-G3-A3CJ-01	CYP4A22	ENST00000371890.3,ENST00000485117.1,ENST00000294337.3,ENST00000490948.1,ENST00000371891.3	chr1	47606451:47606593:47607242:47607287:47607779:47607907,	47607243	47607287	47607266	47607266	Frame_Shift_Del	A	-	p.K121fs
LIHC	TCGA-G3-A3CJ-01	CYP4A22	ENST00000371890.3,ENST00000485117.1,ENST00000294337.3,ENST00000490948.1,ENST00000371891.3	chr1	47610508:47610642:47611537:47611602:47611748:47611825,	47611538	47611602	47611581	47611581	Frame_Shift_Del	A	-	p.P422fs
LIHC	TCGA-G3-A3CJ-01	STIL	ENST00000371877.3,ENST00000360380.3,ENST00000337817.5,ENST00000396221.2,ENST00000243182.6	chr1	47716293:47717594:47725960:47726211:47728574:47728734,	47725961	47726211	47726013	47726013	Frame_Shift_Del	T	-	p.I1009fs
LIHC	TCGA-G3-A3CJ-01	SLC5A9	ENST00000533824.1,ENST00000236495.5,ENST00000438567.2	chr1	48697216:48697297:48697617:48697823:48698038:48698174,	48697618	48697823	48697752	48697752	Frame_Shift_Del	G	-	p.G301fs
LIHC	TCGA-G3-A3CJ-01	SPATA6	ENST00000371843.3	chr1	48764319:48764565:48771458:48771550:48821341:48821441,48764319:48764565:48771458:48771550:48821389:48821441,	48771459	48771550	48771508	48771508	Frame_Shift_Del	T	-	p.R413fs
LIHC	TCGA-G3-A3CJ-01	SPATA6	ENST00000490850.1,ENST00000396199.3,ENST00000603831.1,ENST00000371847.3	chr1	48771476:48771550:48821341:48821441:48825257:48825394,	48821342	48821441	48821382	48821382	Frame_Shift_Del	T	-	p.N385fs
LIHC	TCGA-G3-A3CJ-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000371730.2	chr1	51821980:51822518:51826842:51827027:51829537:51829700,	51826843	51827027	51826917	51826917	Frame_Shift_Del	A	-	p.C824fs
LIHC	TCGA-G3-A3CJ-01	OSBPL9	ENST00000447887.1,ENST00000495776.1,ENST00000531061.1,ENST00000528603.1,ENST00000475697.1,ENST00000435274.2,ENST00000462759.1,ENST00000530544.1,ENST00000486942.1,ENST00000453295.1,ENST00000371714.1,ENST00000435686.2,ENST00000531828.1,ENST00000371710.3,ENST00000526917.1,ENST00000532975.1,ENST00000428468.1,ENST00000337809.4,ENST00000361556.5	chr1	52226377:52226452:52227538:52227643:52231493:52231528,	52227539	52227643	52227578	52227578	Frame_Shift_Del	C	-	p.S256fs
LIHC	TCGA-G3-A3CJ-01	CC2D1B	ENST00000450942.2,ENST00000284376.3,ENST00000460261.1,ENST00000438021.1	chr1	52823197:52823370:52823452:52823570:52824002:52824133,	52823453	52823570	52823490	52823490	Frame_Shift_Del	G	-	p.P520fs
LIHC	TCGA-G3-A3CJ-01	CC2D1B	ENST00000438831.1,ENST00000371586.2	chr1	52823197:52823370:52823452:52823588:52824002:52824133,	52823453	52823588	52823490	52823490	Frame_Shift_Del	G	-	p.P520fs
LIHC	TCGA-G3-A3CJ-01	ZYG11B	ENST00000545132.1,ENST00000294353.6	chr1	53192180:53192355:53222129:53222295:53236691:53237446,	53222130	53222295	53222288	53222288	Frame_Shift_Del	T	-	p.A63fs
LIHC	TCGA-G3-A3CJ-01	ZYG11B	ENST00000545132.1,ENST00000443756.2,ENST00000294353.6	chr1	53236691:53237446:53245524:53245665:53250548:53250725,	53245525	53245665	53245531	53245531	Frame_Shift_Del	G	-	p.G320fs
LIHC	TCGA-G3-A3CJ-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2,ENST00000371513.5	chr1	53427174:53427301:53440440:53440504:53442354:53442384,	53440441	53440504	53440445	53440445	Frame_Shift_Del	A	-	p.T176fs
LIHC	TCGA-G3-A3CJ-01	SLC1A7	ENST00000488036.1,ENST00000371494.4	chr1	53552855:53553899:53554548:53554651:53555471:53555606,	53554549	53554651	53554579	53554579	Frame_Shift_Del	C	-	p.R478fs
LIHC	TCGA-G3-A3CJ-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53675889	53675889	Frame_Shift_Del	A	-	p.A181fs
LIHC	TCGA-G3-A3CJ-01	NDC1	ENST00000371429.3,ENST00000540001.1,ENST00000537333.1,ENST00000234725.8	chr1	54262420:54262477:54262571:54262817:54266365:54266521,	54262572	54262817	54262651	54262651	Frame_Shift_Del	A	-	p.F463fs
LIHC	TCGA-G3-A3CJ-01	LRRC42	ENST00000319223.4,ENST00000371370.3,ENST00000444987.1	chr1	54418011:54418145:54423821:54423953:54426028:54426141,	54423822	54423953	54423890	54423890	Frame_Shift_Del	C	-	p.S181fs
LIHC	TCGA-G3-A3CJ-01	TMEM59	ENST00000371348.1,ENST00000371344.1,ENST00000371341.1,ENST00000234831.5	chr1	54497691:54497978:54502282:54502391:54506428:54506510,	54502283	54502391	54502361	54502361	Frame_Shift_Del	A	-	p.L115fs
LIHC	TCGA-G3-A3CJ-01	TCEANC2	ENST00000371331.1,ENST00000234827.1	chr1	54520053:54520197:54534428:54534570:54554269:54554463,	54534429	54534570	54534531	54534531	Frame_Shift_Del	A	-	p.K69fs
LIHC	TCGA-G3-A3CJ-01	C8A	ENST00000361249.3	chr1	57372339:57372465:57373628:57373786:57378075:57378298,	57373629	57373786	57373665	57373665	Frame_Shift_Del	T	-	p.I420fs
LIHC	TCGA-G3-A3CJ-01	DAB1	ENST00000371231.1,ENST00000420954.2,ENST00000439789.2,ENST00000371232.4	chr1	57491653:57491716:57499058:57499106:57499195:57499246,	57499059	57499106	57499071	57499071	Frame_Shift_Del	A	-	p.F235fs
LIHC	TCGA-G3-A3CJ-01	MYSM1	ENST00000493821.1,ENST00000401044.3,ENST00000472487.1	chr1	59131170:59131303:59132709:59132898:59133518:59133593,	59132710	59132898	59132758	59132758	Frame_Shift_Del	A	-	p.F661fs
LIHC	TCGA-G3-A3CJ-01	MYSM1	ENST00000493821.1,ENST00000401044.3,ENST00000472487.1	chr1	59134655:59134710:59137541:59137630:59139244:59139322,	59137542	59137630	59137586	59137586	Frame_Shift_Del	T	-	p.K539fs
LIHC	TCGA-G3-A3CJ-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59787207:59787422:59805629:59805741:59811918:59812041,	59805630	59805741	59805739	59805739	Frame_Shift_Del	A	-	p.E104fs
LIHC	TCGA-G3-A3CJ-01	FGGY	ENST00000495718.1,ENST00000371218.4,ENST00000371212.1,ENST00000303721.7,ENST00000485720.1,ENST00000430447.1,ENST00000475949.1,ENST00000474476.1	chr1	59977987:59978111:60019795:60019899:60073474:60073582,	60019796	60019899	60019839	60019839	Frame_Shift_Del	G	-	p.E281fs
LIHC	TCGA-G3-A3CJ-01	FGGY	ENST00000495718.1,ENST00000371218.4,ENST00000371212.1,ENST00000303721.7,ENST00000485720.1,ENST00000430447.1,ENST00000475949.1,ENST00000474476.1	chr1	59977987:59978111:60019795:60019899:60073474:60073582,	60019796	60019899	60019896	60019896	Frame_Shift_Del	G	-	p.M300fs
LIHC	TCGA-G3-A3CJ-01	TM2D1	ENST00000496465.1,ENST00000472989.1,ENST00000371180.2,ENST00000371178.1,ENST00000488206.1,ENST00000468586.1,ENST00000606498.1,ENST00000494926.1,ENST00000294613.5	chr1	62160369:62160442:62166605:62166697:62175000:62175090,	62166606	62166697	62166655	62166655	Frame_Shift_Del	A	-	p.F130fs
LIHC	TCGA-G3-A3CJ-01	TM2D1	ENST00000496465.1,ENST00000371177.2,ENST00000371180.2,ENST00000371178.1,ENST00000488206.1,ENST00000468586.1,ENST00000606498.1,ENST00000294613.5	chr1	62166605:62166697:62175000:62175109:62189384:62189444,	62175001	62175109	62175025	62175025	Frame_Shift_Del	A	-	p.F108fs
LIHC	TCGA-G3-A3CJ-01	USP1	ENST00000339950.4	chr1	62902325:62903071:62905469:62905708:62907158:62907251,	62905470	62905708	62905561	62905561	Frame_Shift_Del	A	-	p.E8fs
LIHC	TCGA-G3-A3CJ-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62907865:62907970:62908829:62908990:62910408:62911100,	62908830	62908990	62908839	62908839	Frame_Shift_Del	A	-	p.K136fs
LIHC	TCGA-G3-A3CJ-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62907865:62907970:62908829:62908990:62910408:62911100,	62908830	62908990	62908850	62908850	Frame_Shift_Del	T	-	p.S139fs
LIHC	TCGA-G3-A3CJ-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910520	62910520	Frame_Shift_Del	A	-	p.V223fs
LIHC	TCGA-G3-A3CJ-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910928	62910928	Frame_Shift_Del	A	-	p.G359fs
LIHC	TCGA-G3-A3CJ-01	DOCK7	ENST00000340370.5,ENST00000251157.5,ENST00000454575.1	chr1	62923208:62923376:62939652:62939759:62940878:62941022,	62939653	62939759	62939661	62939661	Frame_Shift_Del	A	-	p.F2057fs
LIHC	TCGA-G3-A3CJ-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63285000	63285000	Frame_Shift_Del	T	-	p.I240fs
LIHC	TCGA-G3-A3CJ-01	ALG6	ENST00000371108.4,ENST00000263440.4,ENST00000465969.1	chr1	63879731:63879817:63881543:63881628:63885040:63885111,	63881544	63881628	63881557	63881557	Frame_Shift_Del	T	-	p.F306fs
LIHC	TCGA-G3-A3CJ-01	ALG6	ENST00000603108.1,ENST00000371108.4,ENST00000263440.4	chr1	63894403:63894472:63894598:63894797:63902493:63902804,	63894599	63894797	63894684	63894684	Frame_Shift_Del	T	-	p.F405fs
LIHC	TCGA-G3-A3CJ-01	ITGB3BP	ENST00000462285.1	chr1	63920050:63920144:63920560:63920639:63974198:63974241,	63920561	63920639	63920618	63920618	Frame_Shift_Del	T	-	p.K131fs
LIHC	TCGA-G3-A3CJ-01	CACHD1	ENST00000495994.1,ENST00000290039.5,ENST00000371073.2,ENST00000470527.1	chr1	65107502:65107652:65113483:65113717:65117843:65117993,	65113484	65113717	65113571	65113571	Frame_Shift_Del	C	-	p.A415fs
LIHC	TCGA-G3-A3CJ-01	LEPR	ENST00000344610.8,ENST00000406510.3,ENST00000462765.1,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66031228:66031288:66036155:66036485:66038008:66038132,	66036156	66036485	66036406	66036406	Frame_Shift_Del	A	-	p.R97fs
LIHC	TCGA-G3-A3CJ-01	LEPR	ENST00000344610.8,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66075629:66075789:66075896:66075979:66081690:66081907,	66075897	66075979	66075917	66075917	Frame_Shift_Del	T	-	p.F645fs
LIHC	TCGA-G3-A3CJ-01	PDE4B	ENST00000423207.2	chr1	66458418:66458825:66713142:66713337:66723329:66723366,	66713143	66713337	66713154	66713154	Frame_Shift_Del	A	-	p.E83fs
LIHC	TCGA-G3-A3CJ-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147666	67147666	Frame_Shift_Del	A	-	p.E310fs
LIHC	TCGA-G3-A3CJ-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371026.3	chr1	67299673:67299831:67303392:67303479:67306151:67306354,67301308:67301460:67303392:67303479:67306151:67306354,	67303393	67303479	67303431	67303431	Frame_Shift_Del	T	-	p.R515fs
LIHC	TCGA-G3-A3CJ-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67306151:67306354:67313166:67313361:67327829:67327985,	67313167	67313361	67313217	67313217	Frame_Shift_Del	T	-	p.N414fs
LIHC	TCGA-G3-A3CJ-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67306151:67306354:67313166:67313361:67327829:67327985,	67313167	67313361	67313240	67313240	Frame_Shift_Del	A	-	p.F406fs
LIHC	TCGA-G3-A3CJ-01	MIER1	ENST00000355356.3,ENST00000401041.1,ENST00000401042.3,ENST00000371018.3,ENST00000357692.2,ENST00000371016.1,ENST00000355977.6,ENST00000371014.1	chr1	67428770:67428843:67436490:67436642:67437337:67437419,	67436491	67436642	67436497	67436497	Frame_Shift_Del	A	-	p.E224fs
LIHC	TCGA-G3-A3CJ-01	WLS	ENST00000354777.2	chr1	68624866:68624930:68659637:68659904:68697876:68697963,	68659638	68659904	68659863	68659863	Frame_Shift_Del	C	-	p.D52fs
LIHC	TCGA-G3-A3CJ-01	WLS	ENST00000530486.1	chr1	68624866:68624930:68659637:68659910:68697876:68697963,68624866:68624930:68659637:68659910:68698342:68698701,	68659638	68659910	68659863	68659863	Frame_Shift_Del	C	-	p.D52fs
LIHC	TCGA-G3-A3CJ-01	DEPDC1	ENST00000456315.2	chr1	68947122:68947295:68947728:68948580:68949632:68949773,	68947729	68948580	68947852	68947852	Frame_Shift_Del	T	-	p.T547fs
LIHC	TCGA-G3-A3CJ-01	DEPDC1	ENST00000456315.2	chr1	68947122:68947295:68947728:68948580:68949632:68949773,	68947729	68948580	68948061	68948061	Frame_Shift_Del	T	-	p.K477fs
LIHC	TCGA-G3-A3CJ-01	LRRC7	ENST00000035383.5,ENST00000310961.5	chr1	70486687:70486812:70488808:70489057:70493853:70494054,	70488809	70489057	70488934	70488934	Frame_Shift_Del	C	-	p.V524fs
LIHC	TCGA-G3-A3CJ-01	ANKRD13C	ENST00000370944.4	chr1	70781163:70781249:70790535:70790640:70801740:70801782,	70790536	70790640	70790583	70790583	Frame_Shift_Del	C	-	p.G177fs
LIHC	TCGA-G3-A3CJ-01	ZRANB2	ENST00000370920.3,ENST00000254821.6	chr1	71542477:71542560:71544139:71544248:71544338:71544391,	71544140	71544248	71544182	71544182	Frame_Shift_Del	T	-	p.K59fs
LIHC	TCGA-G3-A3CJ-01	NEGR1	ENST00000306821.3,ENST00000357731.5	chr1	72076726:72076829:72163690:72163822:72241854:72241980,	72163691	72163822	72163723	72163723	Frame_Shift_Del	G	-	p.P212fs
LIHC	TCGA-G3-A3CJ-01	LRRIQ3	ENST00000395089.1,ENST00000415760.1,ENST00000354431.4	chr1	74621416:74621550:74648221:74648545:74649119:74649178,	74648222	74648545	74648387	74648387	Frame_Shift_Del	A	-	p.L136fs
LIHC	TCGA-G3-A3CJ-01	CRYZ	ENST00000370872.3,ENST00000417775.1,ENST00000340866.5	chr1	75172582:75172678:75172786:75172888:75175781:75175931,	75172787	75172888	75172833	75172833	Frame_Shift_Del	T	-	p.N229fs
LIHC	TCGA-G3-A3CJ-01	TYW3	ENST00000479111.1,ENST00000457880.2,ENST00000370867.3	chr1	75214434:75214506:75217975:75218109:75229577:75229673,	75217976	75218109	75218023	75218023	Frame_Shift_Del	A	-	p.G158fs
LIHC	TCGA-G3-A3CJ-01	SLC44A5	ENST00000370859.3,ENST00000535611.1,ENST00000370855.5	chr1	75679603:75679674:75680289:75680363:75681438:75681542,	75680290	75680363	75680325	75680325	Frame_Shift_Del	T	-	p.K589fs
LIHC	TCGA-G3-A3CJ-01	ACADM	ENST00000532207.1,ENST00000529059.1,ENST00000526129.1,ENST00000525808.1,ENST00000541113.1,ENST00000370834.5,ENST00000420607.2,ENST00000526196.1,ENST00000543667.1,ENST00000370841.4,ENST00000534334.1	chr1	76211519:76211599:76215103:76215244:76216135:76216231,	76215104	76215244	76215115	76215115	Frame_Shift_Del	G	-	p.M240fs
LIHC	TCGA-G3-A3CJ-01	ACADM	ENST00000532207.1,ENST00000529059.1,ENST00000526129.1,ENST00000525808.1,ENST00000541113.1,ENST00000370834.5,ENST00000420607.2,ENST00000526196.1,ENST00000543667.1,ENST00000370841.4,ENST00000534334.1	chr1	76211519:76211599:76215103:76215244:76216135:76216231,	76215104	76215244	76215202	76215202	Frame_Shift_Del	T	-	p.G269fs
LIHC	TCGA-G3-A3CJ-01	ST6GALNAC5	ENST00000477717.1	chr1	77461141:77461205:77509888:77510298:77515942:77516001,77334181:77334427:77509888:77510298:77515942:77516001,	77509889	77510298	77510004	77510004	Frame_Shift_Del	C	-	p.A126fs
LIHC	TCGA-G3-A3CJ-01	PIGK	ENST00000370813.5,ENST00000478391.1	chr1	77672324:77672416:77676120:77676174:77684994:77685111,77632403:77632515:77676120:77676174:77684994:77685111,	77676121	77676174	77676129	77676129	Frame_Shift_Del	C	-	p.A47fs
LIHC	TCGA-G3-A3CJ-01	AK5	ENST00000344720.5,ENST00000530826.1,ENST00000354567.2	chr1	77951992:77952037:77984248:77984412:77987511:77987628,	77984249	77984412	77984294	77984294	Frame_Shift_Del	A	-	p.E372fs
LIHC	TCGA-G3-A3CJ-01	USP33	ENST00000370793.1,ENST00000370792.3,ENST00000370794.3,ENST00000357428.1	chr1	78191306:78191447:78193979:78194397:78195544:78195623,	78193980	78194397	78194213	78194213	Frame_Shift_Del	T	-	p.N332fs
LIHC	TCGA-G3-A3CJ-01	USP33	ENST00000370793.1,ENST00000370792.3,ENST00000370794.3,ENST00000357428.1	chr1	78193979:78194397:78195544:78195623:78196302:78196416,	78195545	78195623	78195580	78195580	Frame_Shift_Del	T	-	p.T259fs
LIHC	TCGA-G3-A3CJ-01	NEXN	ENST00000294624.8,ENST00000457030.1,ENST00000440324.1,ENST00000334785.7	chr1	78381739:78381818:78383250:78383442:78383644:78383723,	78383251	78383442	78383295	78383295	Frame_Shift_Del	A	-	p.P24fs
LIHC	TCGA-G3-A3CJ-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401592	78401592	Frame_Shift_Del	A	-	p.K382fs
LIHC	TCGA-G3-A3CJ-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401649	78401649	Frame_Shift_Del	A	-	p.K402fs
LIHC	TCGA-G3-A3CJ-01	IFI44	ENST00000438486.1	chr1	79115542:79115590:79116225:79116337:79119927:79119964,	79116226	79116337	79116290	79116290	Frame_Shift_Del	A	-	p.Q137fs
LIHC	TCGA-G3-A3CJ-01	IFI44	ENST00000370747.4,ENST00000467790.1	chr1	79115542:79115590:79115870:79116337:79119927:79119964,	79115871	79116337	79116290	79116290	Frame_Shift_Del	A	-	p.Q137fs
LIHC	TCGA-G3-A3CJ-01	TTLL7	ENST00000485638.1,ENST00000474957.1,ENST00000480174.1,ENST00000488014.1,ENST00000260505.8,ENST00000472688.1	chr1	84373138:84373344:84376847:84377046:84383286:84383369,	84376848	84377046	84376933	84376933	Frame_Shift_Del	T	-	p.K567fs
LIHC	TCGA-G3-A3CJ-01	PRKACB	ENST00000394839.2,ENST00000394838.2,ENST00000370685.3,ENST00000370689.2,ENST00000370682.3	chr1	84668365:84668488:84679835:84680000:84700862:84704172,	84679836	84680000	84679946	84679946	Frame_Shift_Del	A	-	p.I292fs
LIHC	TCGA-G3-A3CJ-01	CTBS	ENST00000477677.1	chr1	85031523:85031695:85036264:85036403:85039921:85040147,	85036265	85036403	85036323	85036323	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-G3-A3CJ-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4	chr1	85124000:85124151:85127880:85128058:85128137:85128213,	85127881	85128058	85127951	85127951	Frame_Shift_Del	T	-	p.K259fs
LIHC	TCGA-G3-A3CJ-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4,ENST00000460500.1	chr1	85128137:85128213:85130099:85130235:85131804:85131915,	85130100	85130235	85130219	85130219	Frame_Shift_Del	T	-	p.N158fs
LIHC	TCGA-G3-A3CJ-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331355	85331355	Frame_Shift_Del	A	-	p.L151fs
LIHC	TCGA-G3-A3CJ-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331574	85331574	Frame_Shift_Del	A	-	p.F78fs
LIHC	TCGA-G3-A3CJ-01	MCOLN2	ENST00000463065.1,ENST00000531325.1,ENST00000370608.3,ENST00000284027.5	chr1	85418128:85418213:85422113:85422267:85424211:85424385,	85422114	85422267	85422218	85422218	Frame_Shift_Del	T	-	p.N154fs
LIHC	TCGA-G3-A3CJ-01	MCOLN3	ENST00000370589.2,ENST00000370587.1	chr1	85499780:85499934:85506692:85506860:85510815:85511043,	85506693	85506860	85506784	85506784	Frame_Shift_Del	A	-	p.F102fs
LIHC	TCGA-G3-A3CJ-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648058	85648058	Frame_Shift_Del	T	-	p.N756fs
LIHC	TCGA-G3-A3CJ-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648620	85648620	Frame_Shift_Del	C	-	p.V569fs
LIHC	TCGA-G3-A3CJ-01	SYDE2	ENST00000234668.6	chr1	85647780:85648883:85655739:85656435:85665934:85666196,	85655740	85656435	85656114	85656114	Frame_Shift_Del	A	-	p.L356fs
LIHC	TCGA-G3-A3CJ-01	SYDE2	ENST00000234668.6	chr1	85647780:85648883:85655739:85656435:85665934:85666196,	85655740	85656435	85656123	85656123	Frame_Shift_Del	T	-	p.N353fs
LIHC	TCGA-G3-A3CJ-01	SYDE2	ENST00000234668.6	chr1	85647780:85648883:85655739:85656435:85665934:85666196,	85655740	85656435	85656368	85656368	Frame_Shift_Del	A	-	p.I271fs
LIHC	TCGA-G3-A3CJ-01	ODF2L	ENST00000370566.3,ENST00000370567.1,ENST00000488879.2,ENST00000472368.1,ENST00000359242.3,ENST00000460698.2,ENST00000394731.1,ENST00000317336.7,ENST00000294678.2	chr1	86841915:86842101:86847924:86848041:86848613:86848676,	86847925	86848041	86848014	86848014	Frame_Shift_Del	A	-	p.S179fs
LIHC	TCGA-G3-A3CJ-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206717	89206717	Frame_Shift_Del	A	-	p.Q32fs
LIHC	TCGA-G3-A3CJ-01	PKN2	ENST00000316005.7,ENST00000370513.5,ENST00000370505.3,ENST00000370521.3	chr1	89225904:89226059:89236034:89236152:89237103:89237249,	89236035	89236152	89236142	89236142	Frame_Shift_Del	T	-	p.A204fs
LIHC	TCGA-G3-A3CJ-01	PKN2	ENST00000316005.7,ENST00000370505.3,ENST00000370521.3,ENST00000544045.1,ENST00000436111.1	chr1	89251786:89251896:89270073:89270217:89270528:89270577,	89270074	89270217	89270187	89270187	Frame_Shift_Del	T	-	p.Y465fs
LIHC	TCGA-G3-A3CJ-01	GTF2B	ENST00000370500.5	chr1	89318906:89319029:89322888:89323170:89325564:89325694,	89322889	89323170	89322971	89322971	Frame_Shift_Del	A	-	p.V245fs
LIHC	TCGA-G3-A3CJ-01	GTF2B	ENST00000448623.1	chr1	89318906:89319029:89323055:89323170:89325564:89325694,	89323056	89323170	89323118	89323118	Frame_Shift_Del	T	-	p.K196fs
LIHC	TCGA-G3-A3CJ-01	GTF2B	ENST00000370500.5	chr1	89318906:89319029:89322888:89323170:89325564:89325694,	89322889	89323170	89323118	89323118	Frame_Shift_Del	T	-	p.K196fs
LIHC	TCGA-G3-A3CJ-01	GBP1	ENST00000370473.4	chr1	89520364:89520558:89520795:89520898:89521698:89521742,	89520796	89520898	89520812	89520812	Frame_Shift_Del	T	-	p.K485fs
LIHC	TCGA-G3-A3CJ-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90049345	90049345	Frame_Shift_Del	T	-	p.L379fs
LIHC	TCGA-G3-A3CJ-01	ZNF326	ENST00000340281.4	chr1	90470691:90470803:90472903:90473309:90475646:90475845,	90472904	90473309	90472974	90472974	Frame_Shift_Del	G	-	p.G94fs
LIHC	TCGA-G3-A3CJ-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478699	90478699	Frame_Shift_Del	A	-	p.K277fs
LIHC	TCGA-G3-A3CJ-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478763	90478763	Frame_Shift_Del	A	-	p.E298fs
LIHC	TCGA-G3-A3CJ-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404973	91404973	Frame_Shift_Del	T	-	p.Q647fs
LIHC	TCGA-G3-A3CJ-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405205	91405205	Frame_Shift_Del	T	-	p.K569fs
LIHC	TCGA-G3-A3CJ-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406219	91406219	Frame_Shift_Del	A	-	p.L232fs
LIHC	TCGA-G3-A3CJ-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406587	91406587	Frame_Shift_Del	A	-	p.F108fs
LIHC	TCGA-G3-A3CJ-01	HFM1	ENST00000370425.3,ENST00000370424.3,ENST00000430465.1	chr1	91728037:91728149:91731573:91731664:91733301:91733409,	91731574	91731664	91731617	91731617	Frame_Shift_Del	G	-	p.L1311fs
LIHC	TCGA-G3-A3CJ-01	HFM1	ENST00000430465.1	chr1	91781947:91782033:91784849:91784947:91788506:91788554,	91784850	91784947	91784905	91784905	Frame_Shift_Del	A	-	p.F875fs
LIHC	TCGA-G3-A3CJ-01	RPAP2	ENST00000610020.1	chr1	92786155:92786191:92789001:92789932:92798947:92799030,	92789002	92789932	92789208	92789208	Frame_Shift_Del	A	-	p.Q244fs
LIHC	TCGA-G3-A3CJ-01	RPAP2	ENST00000610020.1	chr1	92786155:92786191:92789001:92789932:92798947:92799030,	92789002	92789932	92789563	92789563	Frame_Shift_Del	A	-	p.G362fs
LIHC	TCGA-G3-A3CJ-01	TMED5	ENST00000479918.1,ENST00000370280.1	chr1	93621856:93622040:93625685:93625783:93645610:93645818,	93625686	93625783	93625715	93625715	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-G3-A3CJ-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93672667:93672955:93676358:93676483:93677657:93677818,	93676359	93676483	93676361	93676361	Frame_Shift_Del	A	-	p.L404fs
LIHC	TCGA-G3-A3CJ-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93672667:93672955:93676358:93676483:93677657:93677818,	93676359	93676483	93676457	93676457	Frame_Shift_Del	A	-	p.A436fs
LIHC	TCGA-G3-A3CJ-01	CCDC18	ENST00000401026.3,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93682192:93682303:93683294:93683426:93687165:93687300,	93683295	93683426	93683368	93683368	Frame_Shift_Del	A	-	p.E634fs
LIHC	TCGA-G3-A3CJ-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93697982:93698150:93701804:93701947:93704866:93705030,	93701805	93701947	93701839	93701839	Frame_Shift_Del	G	-	p.R831fs
LIHC	TCGA-G3-A3CJ-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93712394:93712511:93720027:93720171:93721891:93722095,	93720028	93720171	93720124	93720124	Frame_Shift_Del	A	-	p.K1099fs
LIHC	TCGA-G3-A3CJ-01	CCDC18	ENST00000370276.1,ENST00000343253.7	chr1	93730257:93730458:93735903:93736371:93744019:93744034,	93735904	93736371	93736023	93736023	Frame_Shift_Del	A	-	p.P1334fs
LIHC	TCGA-G3-A3CJ-01	CCDC18	ENST00000370276.1,ENST00000343253.7	chr1	93730257:93730458:93735903:93736371:93744019:93744034,	93735904	93736371	93736332	93736332	Frame_Shift_Del	A	-	p.L1437fs
LIHC	TCGA-G3-A3CJ-01	FNBP1L	ENST00000260506.8,ENST00000370256.4,ENST00000370253.2,ENST00000604705.1	chr1	93913838:93913862:93965024:93965140:93987638:93987692,	93965025	93965140	93965088	93965088	Frame_Shift_Del	A	-	p.K30fs
LIHC	TCGA-G3-A3CJ-01	BCAR3	ENST00000260502.6,ENST00000370244.1,ENST00000539242.1,ENST00000370243.1,ENST00000370247.3	chr1	94037226:94037398:94041570:94041686:94047857:94048510,	94041571	94041686	94041638	94041638	Frame_Shift_Del	C	-	p.V579fs
LIHC	TCGA-G3-A3CJ-01	BCAR3	ENST00000466632.1,ENST00000539242.1	chr1	94047857:94048510:94049574:94049678:94050528:94050658,	94049575	94049678	94049606	94049606	Frame_Shift_Del	T	-	p.K334fs
LIHC	TCGA-G3-A3CJ-01	BCAR3	ENST00000370244.1	chr1	94107859:94107899:94140169:94140497:94147153:94147385,94107859:94107899:94140169:94140497:94171647:94171698,	94140170	94140497	94140319	94140319	Frame_Shift_Del	T	-	p.K56fs
LIHC	TCGA-G3-A3CJ-01	ABCD3	ENST00000370214.4,ENST00000315713.5	chr1	94884034:94884144:94924162:94924199:94930330:94930429,	94924163	94924199	94924167	94924167	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-G3-A3CJ-01	DPYD	ENST00000370192.3	chr1	97658624:97658804:97700407:97700550:97770814:97770934,	97700408	97700550	97700526	97700526	Frame_Shift_Del	A	-	p.L775fs
LIHC	TCGA-G3-A3CJ-01	DPYD	ENST00000370192.3	chr1	98157276:98157354:98164906:98165103:98187065:98187210,	98164907	98165103	98165057	98165057	Frame_Shift_Del	G	-	p.P179fs
LIHC	TCGA-G3-A3CJ-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100327812:100327979:100329941:100330145:100335955:100336137,	100329942	100330145	100330034	100330034	Frame_Shift_Del	T	-	p.F185fs
LIHC	TCGA-G3-A3CJ-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100335955:100336137:100336313:100336425:100340242:100340366,	100336314	100336425	100336342	100336342	Frame_Shift_Del	T	-	p.I292fs
LIHC	TCGA-G3-A3CJ-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100357987:100358163:100361841:100361944:100366191:100366417,	100361842	100361944	100361852	100361852	Frame_Shift_Del	T	-	p.H1090fs
LIHC	TCGA-G3-A3CJ-01	SLC35A3	ENST00000370153.1,ENST00000533028.1,ENST00000427993.2,ENST00000370156.3,ENST00000370155.3	chr1	100480857:100480976:100483237:100483371:100487941:100488512,	100483238	100483371	100483342	100483342	Frame_Shift_Del	T	-	p.Y286fs
LIHC	TCGA-G3-A3CJ-01	SASS6	ENST00000462159.1,ENST00000287482.5	chr1	100587935:100588040:100588765:100588845:100591437:100591498,	100588766	100588845	100588802	100588802	Frame_Shift_Del	A	-	p.L57fs
LIHC	TCGA-G3-A3CJ-01	RTCA	ENST00000370128.4,ENST00000260563.4	chr1	100738949:100739008:100740379:100740521:100741154:100741279,	100740380	100740521	100740508	100740508	Frame_Shift_Del	T	-	p.V201fs
LIHC	TCGA-G3-A3CJ-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000336454.3	chr1	100908489:100908552:100920960:100921048:100928206:100928414,	100920961	100921048	100920994	100920994	Frame_Shift_Del	C	-	p.P185fs
LIHC	TCGA-G3-A3CJ-01	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964600	100964600	Frame_Shift_Del	T	-	p.F513fs
LIHC	TCGA-G3-A3CJ-01	VCAM1	ENST00000370119.4,ENST00000294728.2	chr1	101190179:101190446:101194662:101194938:101196753:101197074,	101194663	101194938	101194748	101194748	Frame_Shift_Del	G	-	p.M338fs
LIHC	TCGA-G3-A3CJ-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000461720.1,ENST00000358392.2,ENST00000370096.3	chr1	103468302:103468347:103468770:103468824:103469999:103470037,	103468771	103468824	103468777	103468777	Frame_Shift_Del	C	-	p.G676fs
LIHC	TCGA-G3-A3CJ-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000461720.1,ENST00000358392.2,ENST00000370096.3	chr1	103468302:103468347:103468770:103468824:103469999:103470037,	103468771	103468824	103468796	103468796	Frame_Shift_Del	C	-	p.G670fs
LIHC	TCGA-G3-A3CJ-01	SLC25A24	ENST00000565488.1,ENST00000370041.4,ENST00000264128.9	chr1	108677444:108679459:108681679:108681830:108686164:108686332,	108681680	108681830	108681738	108681738	Frame_Shift_Del	G	-	p.T397fs
LIHC	TCGA-G3-A3CJ-01	STXBP3	ENST00000370008.3	chr1	109318954:109319045:109321907:109322032:109325043:109325139,	109321908	109322032	109321911	109321911	Frame_Shift_Del	A	-	p.K230fs
LIHC	TCGA-G3-A3CJ-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466643	109466643	Frame_Shift_Del	C	-	p.S541fs
LIHC	TCGA-G3-A3CJ-01	CELSR2	ENST00000271332.3	chr1	109805427:109805591:109805763:109805889:109806232:109806399,	109805764	109805889	109805865	109805865	Frame_Shift_Del	T	-	p.F1604fs
LIHC	TCGA-G3-A3CJ-01	CELSR2	ENST00000271332.3	chr1	109812554:109812755:109813047:109813222:109813548:109813661,	109813048	109813222	109813170	109813170	Frame_Shift_Del	C	-	p.G2477fs
LIHC	TCGA-G3-A3CJ-01	CELSR2	ENST00000489018.1	chr1	109813838:109813918:109814007:109814344:109814899:109815027,	109814008	109814344	109814234	109814234	Frame_Shift_Del	T	-	p.F2606fs
LIHC	TCGA-G3-A3CJ-01	SYPL2	ENST00000369872.3	chr1	110019397:110019599:110020439:110020631:110021999:110022166,	110020440	110020631	110020495	110020495	Frame_Shift_Del	G	-	p.W171fs
LIHC	TCGA-G3-A3CJ-01	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110085932	110085932	Frame_Shift_Del	G	-	p.L96fs
LIHC	TCGA-G3-A3CJ-01	GSTM4	ENST00000326729.5,ENST00000369836.4	chr1	110199342:110199409:110199836:110199901:110200211:110200293,	110199837	110199901	110199870	110199870	Frame_Shift_Del	A	-	p.E49fs
LIHC	TCGA-G3-A3CJ-01	EPS8L3	ENST00000361965.4,ENST00000369805.3	chr1	110294380:110294404:110294616:110294815:110295307:110295342,	110294617	110294815	110294750	110294750	Frame_Shift_Del	G	-	p.P435fs
LIHC	TCGA-G3-A3CJ-01	CSF1	ENST00000357302.4,ENST00000525659.1,ENST00000420111.2,ENST00000344188.5,ENST00000527192.1,ENST00000329608.6,ENST00000369802.3,ENST00000369801.1	chr1	110453607:110453684:110458255:110458318:110459914:110460047,110456880:110457003:110458255:110458318:110459914:110460047,	110458256	110458318	110458284	110458284	Frame_Shift_Del	A	-	p.Q64fs
LIHC	TCGA-G3-A3CJ-01	CSF1	ENST00000344188.5,ENST00000369801.1	chr1	110464468:110464616:110465787:110466333:110466681:110466812,	110465788	110466333	110465822	110465822	Frame_Shift_Del	C	-	p.Y193fs
LIHC	TCGA-G3-A3CJ-01	CSF1	ENST00000344188.5,ENST00000369801.1	chr1	110464468:110464616:110465787:110466333:110466681:110466812,	110465788	110466333	110465834	110465834	Frame_Shift_Del	C	-	p.I197fs
LIHC	TCGA-G3-A3CJ-01	AHCYL1	ENST00000369799.5,ENST00000359172.3,ENST00000393614.4	chr1	110557384:110557479:110558046:110558153:110558965:110559082,	110558047	110558153	110558086	110558086	Frame_Shift_Del	A	-	p.K240fs
LIHC	TCGA-G3-A3CJ-01	SLC16A4	ENST00000369781.4,ENST00000461647.2	chr1	110921565:110921978:110923603:110923765:110924273:110924417,110921565:110921978:110923603:110923765:110931858:110931977,110919571:110919783:110923603:110923765:110924273:110924417,	110923604	110923765	110923648	110923648	Frame_Shift_Del	A	-	p.L161fs
LIHC	TCGA-G3-A3CJ-01	CHI3L2	ENST00000369744.2,ENST00000477185.2,ENST00000474304.2,ENST00000528451.1,ENST00000497587.2,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000486561.2,ENST00000369748.4	chr1	111773487:111773565:111773859:111773916:111777528:111777679,	111773860	111773916	111773873	111773873	Frame_Shift_Del	A	-	p.K96fs
LIHC	TCGA-G3-A3CJ-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111965548:111965673:111966164:111966330:111968004:111968061,	111966165	111966330	111966288	111966288	Frame_Shift_Del	A	-	p.F120fs
LIHC	TCGA-G3-A3CJ-01	C1orf162	ENST00000369718.3	chr1	112019423:112019489:112019955:112020050:112020272:112020397,112019423:112019489:112019955:112020050:112020347:112020397,	112019956	112020050	112019968	112019968	Frame_Shift_Del	A	-	p.L40fs
LIHC	TCGA-G3-A3CJ-01	DDX20	ENST00000533164.1,ENST00000369702.4,ENST00000536167.1	chr1	112303847:112303906:112304876:112304959:112305298:112305404,	112304877	112304959	112304946	112304946	Frame_Shift_Del	T	-	p.I364fs
LIHC	TCGA-G3-A3CJ-01	ST7L	ENST00000463235.1,ENST00000358039.4,ENST00000480988.1,ENST00000369666.1,ENST00000497457.1,ENST00000369664.1,ENST00000543570.1,ENST00000369668.2,ENST00000343210.7,ENST00000479436.1,ENST00000490067.1,ENST00000490715.1,ENST00000538187.1,ENST00000360743.4,ENST00000361846.3,ENST00000418497.1	chr1	113134146:113134225:113140592:113140708:113143415:113143470,	113140593	113140708	113140631	113140631	Frame_Shift_Del	A	-	p.F195fs
LIHC	TCGA-G3-A3CJ-01	ST7L	ENST00000459630.1	chr1	113153462:113153625:113159434:113159517:113161530:113161563,113153462:113153625:113159434:113159517:113160868:113160991,	113159435	113159517	113159505	113159505	Frame_Shift_Del	A	-	p.L73fs
LIHC	TCGA-G3-A3CJ-01	CAPZA1	ENST00000498626.1,ENST00000263168.3	chr1	113196219:113196283:113197086:113197293:113201643:113201723,	113197087	113197293	113197144	113197144	Frame_Shift_Del	A	-	p.K93fs
LIHC	TCGA-G3-A3CJ-01	SLC16A1	ENST00000369626.3,ENST00000538576.1,ENST00000458229.1	chr1	113456646:113456787:113459799:113460666:113464611:113464755,	113459800	113460666	113460371	113460371	Frame_Shift_Del	T	-	p.K219fs
LIHC	TCGA-G3-A3CJ-01	SLC16A1	ENST00000429288.1,ENST00000369626.3,ENST00000443580.1,ENST00000433570.4,ENST00000538576.1,ENST00000458229.1	chr1	113460639:113460666:113464611:113464755:113471713:113471974,	113464612	113464755	113464659	113464659	Frame_Shift_Del	A	-	p.F105fs
LIHC	TCGA-G3-A3CJ-01	PHTF1	ENST00000369600.1,ENST00000393357.2,ENST00000357783.2,ENST00000369604.1,ENST00000369596.2	chr1	114254561:114254735:114255900:114256060:114269039:114269080,114254561:114254735:114255900:114256060:114267380:114267515,	114255901	114256060	114256045	114256045	Frame_Shift_Del	T	-	p.K213fs
LIHC	TCGA-G3-A3CJ-01	PHTF1	ENST00000447664.2	chr1	114255900:114256060:114267380:114267515:114269039:114269080,114254561:114254735:114267380:114267515:114269039:114269080,	114267381	114267515	114267461	114267461	Frame_Shift_Del	G	-	p.S182fs
LIHC	TCGA-G3-A3CJ-01	PTPN22	ENST00000420377.2,ENST00000359785.5,ENST00000484147.1,ENST00000528414.1	chr1	114399003:114399063:114399169:114399241:114400359:114400398,	114399170	114399241	114399237	114399237	Frame_Shift_Del	T	-	p.K138fs
LIHC	TCGA-G3-A3CJ-01	DCLRE1B	ENST00000369563.3	chr1	114448030:114448397:114450630:114450813:114453752:114454460,114449617:114449783:114450630:114450813:114453752:114454460,	114450631	114450813	114450659	114450659	Frame_Shift_Del	A	-	p.L128fs
LIHC	TCGA-G3-A3CJ-01	DCLRE1B	ENST00000369563.3	chr1	114448030:114448397:114450630:114450813:114453752:114454460,114449617:114449783:114450630:114450813:114453752:114454460,	114450631	114450813	114450680	114450680	Frame_Shift_Del	G	-	p.L135fs
LIHC	TCGA-G3-A3CJ-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115222309:115222329:115222879:115223099:115226819:115226985,	115222880	115223099	115223039	115223039	Frame_Shift_Del	T	-	p.N232fs
LIHC	TCGA-G3-A3CJ-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268902	115268902	Frame_Shift_Del	C	-	p.A570fs
LIHC	TCGA-G3-A3CJ-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115268831:115269007:115269603:115269711:115272878:115273023,	115269604	115269711	115269652	115269652	Frame_Shift_Del	A	-	p.F518fs
LIHC	TCGA-G3-A3CJ-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430252	115430252	Frame_Shift_Del	A	-	p.E399fs
LIHC	TCGA-G3-A3CJ-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430272	115430272	Frame_Shift_Del	A	-	p.K406fs
LIHC	TCGA-G3-A3CJ-01	SPAG17	ENST00000492438.1,ENST00000336338.5,ENST00000437255.1,ENST00000483383.1	chr1	118516104:118516184:118523892:118524024:118526433:118526536,	118523893	118524024	118523966	118523966	Frame_Shift_Del	T	-	p.K1977fs
LIHC	TCGA-G3-A3CJ-01	SPAG17	ENST00000336338.5	chr1	118581914:118582067:118583352:118583464:118584425:118584665,	118583353	118583464	118583387	118583387	Frame_Shift_Del	C	-	p.G1044fs
LIHC	TCGA-G3-A3CJ-01	SPAG17	ENST00000336338.5	chr1	118634552:118634625:118635778:118635940:118640292:118640474,	118635779	118635940	118635784	118635784	Frame_Shift_Del	A	-	p.S390fs
LIHC	TCGA-G3-A3CJ-01	HMGCS2	ENST00000544913.2	chr1	120299895:120300061:120301740:120301905:120302486:120302612,120299895:120300061:120301740:120301905:120306794:120307249,	120301741	120301905	120301762	120301762	Frame_Shift_Del	T	-	p.I277fs
LIHC	TCGA-G3-A3CJ-01	PDE4DIP	ENST00000529945.1,ENST00000479408.2,ENST00000369354.3,ENST00000313382.9,ENST00000369349.3,ENST00000369359.4,ENST00000369351.3,ENST00000313431.9,ENST00000369356.4,ENST00000530740.1	chr1	144922186:144922279:144922518:144922638:144923689:144923821,	144922519	144922638	144922574	144922574	Frame_Shift_Del	T	-	p.K441fs
LIHC	TCGA-G3-A3CJ-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561594	145561594	Frame_Shift_Del	C	-	p.P428fs
LIHC	TCGA-G3-A3CJ-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561841	145561841	Frame_Shift_Del	G	-	p.R510fs
LIHC	TCGA-G3-A3CJ-01	PIAS3	ENST00000369298.1,ENST00000393045.2	chr1	145580504:145580610:145581181:145581255:145581403:145581564,	145581182	145581255	145581252	145581252	Frame_Shift_Del	C	-	p.C327fs
LIHC	TCGA-G3-A3CJ-01	CD160	ENST00000401557.3,ENST00000369288.2	chr1	145698952:145699090:145704016:145704343:145706685:145706827,	145704017	145704343	145704252	145704252	Frame_Shift_Del	C	-	p.G55fs
LIHC	TCGA-G3-A3CJ-01	GPR89A	ENST00000528944.1,ENST00000460277.1,ENST00000454423.3,ENST00000532574.1	chr1	145816708:145816740:145818766:145818826:145826887:145827015,	145818767	145818826	145818815	145818815	Frame_Shift_Del	A	-	p.F18fs
LIHC	TCGA-G3-A3CJ-01	CHD1L	ENST00000361293.5,ENST00000369258.4,ENST00000369259.3,ENST00000431239.1,ENST00000467213.1	chr1	146751698:146751864:146756023:146756172:146757000:146757164,	146756024	146756172	146756116	146756116	Frame_Shift_Del	A	-	p.K600fs
LIHC	TCGA-G3-A3CJ-01	CHD1L	ENST00000361293.5,ENST00000369258.4,ENST00000369259.3,ENST00000431239.1,ENST00000467213.1	chr1	146751698:146751864:146756023:146756172:146757000:146757164,	146756024	146756172	146756131	146756131	Frame_Shift_Del	A	-	p.K605fs
LIHC	TCGA-G3-A3CJ-01	CHD1L	ENST00000361293.5,ENST00000369258.4,ENST00000369259.3,ENST00000431239.1,ENST00000467213.1	chr1	146757000:146757164:146757974:146758177:146759313:146759412,	146757975	146758177	146758144	146758144	Frame_Shift_Del	G	-	p.G730fs
LIHC	TCGA-G3-A3CJ-01	SV2A	ENST00000369145.1,ENST00000369146.3	chr1	149881352:149881442:149882121:149882255:149882377:149882529,	149882122	149882255	149882245	149882245	Frame_Shift_Del	A	-	p.F322fs
LIHC	TCGA-G3-A3CJ-01	PRPF3	ENST00000543398.1	chr1	150310635:150310802:150312878:150312953:150315784:150315928,	150312879	150312953	150312904	150312904	Frame_Shift_Del	T	-	p.Y411fs
LIHC	TCGA-G3-A3CJ-01	PRPF3	ENST00000324862.6,ENST00000414970.2,ENST00000467329.1	chr1	150310635:150310802:150312873:150312953:150315784:150315928,	150312874	150312953	150312904	150312904	Frame_Shift_Del	T	-	p.Y411fs
LIHC	TCGA-G3-A3CJ-01	TARS2	ENST00000369064.3,ENST00000369051.3,ENST00000606933.1,ENST00000369054.2,ENST00000467982.2	chr1	150476810:150476911:150477107:150477209:150477381:150477454,	150477108	150477209	150477177	150477177	Frame_Shift_Del	G	-	p.L596fs
LIHC	TCGA-G3-A3CJ-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482385	150482385	Frame_Shift_Del	C	-	p.P99fs
LIHC	TCGA-G3-A3CJ-01	ECM1	ENST00000369049.4,ENST00000369047.4	chr1	150483351:150483674:150483932:150484307:150484827:150485048,	150483933	150484307	150484069	150484069	Frame_Shift_Del	G	-	p.R282fs
LIHC	TCGA-G3-A3CJ-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5	chr1	150530420:150530625:150530948:150531125:150531437:150531641,	150530949	150531125	150531054	150531054	Frame_Shift_Del	C	-	p.P831fs
LIHC	TCGA-G3-A3CJ-01	GOLPH3L	ENST00000427665.1	chr1	150634289:150634404:150636107:150636239:150667131:150667326,150634289:150634404:150636107:150636239:150666583:150666649,	150636108	150636239	150636190	150636190	Frame_Shift_Del	C	-	p.G78fs
LIHC	TCGA-G3-A3CJ-01	GOLPH3L	ENST00000427665.1	chr1	150634289:150634404:150636107:150636239:150667131:150667326,150634289:150634404:150636107:150636239:150666583:150666649,	150636108	150636239	150636200	150636200	Frame_Shift_Del	G	-	p.L75fs
LIHC	TCGA-G3-A3CJ-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000476530.1,ENST00000368993.2	chr1	150686560:150686597:150687090:150687154:150689613:150689758,	150687091	150687154	150687121	150687121	Frame_Shift_Del	T	-	p.N71fs
LIHC	TCGA-G3-A3CJ-01	CTSS	ENST00000448301.2,ENST00000368985.3	chr1	150720271:150720355:150722481:150722647:150724256:150724310,	150722482	150722647	150722598	150722598	Frame_Shift_Del	T	-	p.K226fs
LIHC	TCGA-G3-A3CJ-01	CTSS	ENST00000448301.2	chr1	150730333:150730456:150737113:150737240:150738173:150738268,	150737114	150737240	150737129	150737129	Frame_Shift_Del	T	-	p.K37fs
LIHC	TCGA-G3-A3CJ-01	CTSK	ENST00000271651.3	chr1	150772019:150772185:150776496:150776715:150778336:150778492,	150776497	150776715	150776622	150776622	Frame_Shift_Del	G	-	p.Q165fs
LIHC	TCGA-G3-A3CJ-01	ARNT	ENST00000515192.1,ENST00000354396.2,ENST00000505755.1,ENST00000358595.5	chr1	150790403:150790506:150795669:150795821:150799018:150799093,	150795670	150795821	150795807	150795807	Frame_Shift_Del	T	-	p.K419fs
LIHC	TCGA-G3-A3CJ-01	SETDB1	ENST00000368969.4,ENST00000448029.1,ENST00000271640.5,ENST00000368963.1,ENST00000525956.1,ENST00000368962.2,ENST00000534805.1,ENST00000498193.1	chr1	150900317:150900450:150902442:150902594:150912415:150912450,	150902443	150902594	150902464	150902464	Frame_Shift_Del	T	-	p.S94fs
LIHC	TCGA-G3-A3CJ-01	GABPB2	ENST00000368918.3,ENST00000489549.1	chr1	151070327:151070478:151076037:151076151:151079512:151079653,	151076038	151076151	151076123	151076123	Frame_Shift_Del	C	-	p.V236fs
LIHC	TCGA-G3-A3CJ-01	GABPB2	ENST00000368917.1,ENST00000368916.1	chr1	151076037:151076151:151079512:151079698:151089867:151089992,151070327:151070478:151079512:151079698:151089867:151089992,	151079513	151079698	151079661	151079661	Frame_Shift_Del	C	-	p.G295fs
LIHC	TCGA-G3-A3CJ-01	VPS72	ENST00000354473.4	chr1	151149206:151149507:151150476:151150621:151156792:151156969,151148937:151149540:151150476:151150621:151156792:151156969,	151150477	151150621	151150503	151150503	Frame_Shift_Del	G	-	p.P227fs
LIHC	TCGA-G3-A3CJ-01	SELENBP1	ENST00000470345.1,ENST00000474352.1	chr1	151340674:151340795:151341479:151342245:151345113:151345159,	151341480	151342245	151341500	151341500	Frame_Shift_Del	G	-	p.R50fs
LIHC	TCGA-G3-A3CJ-01	SELENBP1	ENST00000423070.1,ENST00000427977.2,ENST00000455397.1,ENST00000443708.1	chr1	151340674:151340795:151341475:151341665:151341917:151341982,	151341476	151341665	151341500	151341500	Frame_Shift_Del	G	-	p.R50fs
LIHC	TCGA-G3-A3CJ-01	SELENBP1	ENST00000455839.1	chr1	151340674:151340795:151341479:151341665:151341917:151341982,151340674:151340795:151341479:151341665:151342188:151342245,	151341480	151341665	151341500	151341500	Frame_Shift_Del	G	-	p.R50fs
LIHC	TCGA-G3-A3CJ-01	SELENBP1	ENST00000492643.1,ENST00000493560.1,ENST00000463664.1	chr1	151340674:151340795:151341479:151342030:151342188:151342245,	151341480	151342030	151341500	151341500	Frame_Shift_Del	G	-	p.R50fs
LIHC	TCGA-G3-A3CJ-01	RORC	ENST00000392697.3,ENST00000318247.6,ENST00000356728.6	chr1	151783800:151783910:151785422:151785533:151785714:151785822,	151785423	151785533	151785441	151785441	Frame_Shift_Del	G	-	p.L402fs
LIHC	TCGA-G3-A3CJ-01	THEM5	ENST00000368817.5	chr1	151820657:151820768:151823528:151823667:151824733:151824876,	151823529	151823667	151823537	151823537	Frame_Shift_Del	C	-	p.G152fs
LIHC	TCGA-G3-A3CJ-01	THEM5	ENST00000368817.5	chr1	151820657:151820768:151823528:151823667:151824733:151824876,	151823529	151823667	151823562	151823562	Frame_Shift_Del	A	-	p.F144fs
LIHC	TCGA-G3-A3CJ-01	THEM4	ENST00000368814.3	chr1	151860748:151860859:151861689:151861849:151867483:151867670,	151861690	151861849	151861722	151861722	Frame_Shift_Del	A	-	p.F138fs
LIHC	TCGA-G3-A3CJ-01	PGLYRP4	ENST00000359650.5,ENST00000368739.3	chr1	153303230:153303421:153309656:153309775:153312856:153313055,	153309657	153309775	153309707	153309707	Frame_Shift_Del	G	-	p.P294fs
LIHC	TCGA-G3-A3CJ-01	S100A14	ENST00000368701.1,ENST00000469571.1,ENST00000344616.2,ENST00000368702.1	chr1	153587393:153587498:153587710:153587857:153588304:153588412,	153587711	153587857	153587722	153587722	Frame_Shift_Del	G	-	p.H56fs
LIHC	TCGA-G3-A3CJ-01	S100A14	ENST00000368701.1,ENST00000469571.1,ENST00000344616.2,ENST00000368702.1	chr1	153587393:153587498:153587710:153587857:153588304:153588412,	153587711	153587857	153587734	153587734	Frame_Shift_Del	G	-	p.Q53fs
LIHC	TCGA-G3-A3CJ-01	INTS3	ENST00000503133.1	chr1	153730112:153730239:153734045:153734152:153735203:153735316,	153734046	153734152	153734056	153734056	Frame_Shift_Del	C	-	p.P268fs
LIHC	TCGA-G3-A3CJ-01	INTS3	ENST00000476843.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000512605.1,ENST00000481797.1,ENST00000503133.1	chr1	153735203:153735323:153735708:153735838:153736307:153736362,	153735709	153735838	153735775	153735775	Frame_Shift_Del	C	-	p.T362fs
LIHC	TCGA-G3-A3CJ-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153906610:153906778:153907235:153907440:153908535:153908664,	153907236	153907440	153907359	153907359	Frame_Shift_Del	C	-	p.A885fs
LIHC	TCGA-G3-A3CJ-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153914404:153914589:153915031:153915101:153915353:153915557,153914662:153914832:153915031:153915101:153915353:153915557,	153915032	153915101	153915097	153915097	Frame_Shift_Del	C	-	p.G192fs
LIHC	TCGA-G3-A3CJ-01	CRTC2	ENST00000368630.3,ENST00000368633.1,ENST00000303569.6	chr1	153920933:153921120:153921590:153921860:153923735:153924080,	153921591	153921860	153921811	153921811	Frame_Shift_Del	G	-	p.P485fs
LIHC	TCGA-G3-A3CJ-01	CRTC2	ENST00000368633.1,ENST00000303569.6,ENST00000461638.2	chr1	153921741:153921860:153923735:153924142:153924493:153924738,	153923736	153924142	153923864	153923864	Frame_Shift_Del	G	-	p.H427fs
LIHC	TCGA-G3-A3CJ-01	CRTC2	ENST00000368633.1,ENST00000303569.6,ENST00000461638.2	chr1	153921741:153921860:153923735:153924142:153924493:153924738,	153923736	153924142	153924113	153924113	Frame_Shift_Del	G	-	p.L343fs
LIHC	TCGA-G3-A3CJ-01	CRTC2	ENST00000487235.1	chr1	153923735:153924142:153924493:153924738:153924872:153924922,153921647:153921860:153924493:153924738:153924872:153924922,	153924494	153924738	153924620	153924620	Frame_Shift_Del	G	-	p.L291fs
LIHC	TCGA-G3-A3CJ-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934772	153934772	Frame_Shift_Del	A	-	p.L81fs
LIHC	TCGA-G3-A3CJ-01	CREB3L4	ENST00000449724.1,ENST00000461688.1,ENST00000368600.3	chr1	153940997:153941175:153941405:153941652:153941809:153941931,153941000:153941115:153941405:153941652:153941809:153941931,	153941406	153941652	153941532	153941532	Frame_Shift_Del	C	-	p.P102fs
LIHC	TCGA-G3-A3CJ-01	CREB3L4	ENST00000492729.1	chr1	153941000:153941115:153941405:153941931:153945219:153945244,	153941406	153941931	153941532	153941532	Frame_Shift_Del	C	-	p.P102fs
LIHC	TCGA-G3-A3CJ-01	NUP210L	ENST00000368553.1,ENST00000271854.3	chr1	153965490:153965565:153967551:153967656:153982447:153982597,	153967552	153967656	153967586	153967586	Frame_Shift_Del	A	-	p.F1819fs
LIHC	TCGA-G3-A3CJ-01	NUP210L	ENST00000368553.1,ENST00000368559.3,ENST00000271854.3	chr1	153999981:154000073:154002371:154002530:154018544:154018676,	154002372	154002530	154002408	154002408	Frame_Shift_Del	C	-	p.G1273fs
LIHC	TCGA-G3-A3CJ-01	UBAP2L	ENST00000428931.1,ENST00000343815.6,ENST00000456325.1,ENST00000441890.1,ENST00000412596.1,ENST00000361546.2	chr1	154201090:154201201:154207066:154207235:154207671:154207767,	154207067	154207235	154207218	154207218	Frame_Shift_Del	C	-	p.A144fs
LIHC	TCGA-G3-A3CJ-01	UBAP2L	ENST00000271877.7,ENST00000368504.1	chr1	154201090:154201201:154207066:154207268:154207671:154207767,	154207067	154207268	154207218	154207218	Frame_Shift_Del	C	-	p.A144fs
LIHC	TCGA-G3-A3CJ-01	UBAP2L	ENST00000271877.7,ENST00000428931.1,ENST00000343815.6,ENST00000361546.2	chr1	154223956:154224129:154226375:154226565:154227311:154227366,	154226376	154226565	154226462	154226462	Frame_Shift_Del	A	-	p.Q584fs
LIHC	TCGA-G3-A3CJ-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246357	154246357	Frame_Shift_Del	G	-	p.G143fs
LIHC	TCGA-G3-A3CJ-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246357	154246357	Frame_Shift_Del	G	-	p.G143fs
LIHC	TCGA-G3-A3CJ-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246357	154246357	Frame_Shift_Del	G	-	p.G143fs
LIHC	TCGA-G3-A3CJ-01	ATP8B2	ENST00000368489.3	chr1	154317446:154317630:154317797:154318021:154318275:154318359,	154317798	154318021	154318007	154318007	Frame_Shift_Del	G	-	p.G927fs
LIHC	TCGA-G3-A3CJ-01	ADAR	ENST00000368471.3,ENST00000368474.4,ENST00000292205.5,ENST00000529168.1	chr1	154560600:154560734:154561026:154561149:154561844:154561938,	154561027	154561149	154561115	154561115	Frame_Shift_Del	G	-	p.Q933fs
LIHC	TCGA-G3-A3CJ-01	SHC1	ENST00000368445.5,ENST00000368453.4,ENST00000448116.2,ENST00000414115.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938637:154938707:154938794:154938993:154940146:154940273,	154938795	154938993	154938965	154938965	Frame_Shift_Del	C	-	p.D338fs
LIHC	TCGA-G3-A3CJ-01	FLAD1	ENST00000477609.1	chr1	154962688:154962733:154962814:154963004:154965188:154965262,154962688:154962733:154962814:154963004:154965040:154965149,	154962815	154963004	154962859	154962859	Frame_Shift_Del	C	-	p.A470fs
LIHC	TCGA-G3-A3CJ-01	ADAM15	ENST00000271836.6,ENST00000368413.1,ENST00000368412.3,ENST00000526491.1,ENST00000355956.2,ENST00000461564.2,ENST00000498481.2,ENST00000531455.1,ENST00000527418.1,ENST00000356955.2,ENST00000360674.4,ENST00000359280.4,ENST00000529473.1,ENST00000368410.2,ENST00000472434.1,ENST00000461234.1,ENST00000449910.2	chr1	155030721:155030917:155031185:155031263:155032377:155032450,	155031186	155031263	155031224	155031224	Frame_Shift_Del	G	-	p.L652fs
LIHC	TCGA-G3-A3CJ-01	ADAM15	ENST00000526491.1	chr1	155033238:155033308:155034379:155034593:155034720:155034772,155033893:155033965:155034379:155034593:155034720:155034772,	155034380	155034593	155034404	155034404	Frame_Shift_Del	C	-	p.P794fs
LIHC	TCGA-G3-A3CJ-01	ADAM15	ENST00000527418.1,ENST00000356955.2,ENST00000472434.1,ENST00000449910.2	chr1	155033238:155033308:155034379:155034451:155034720:155034772,155033893:155033965:155034379:155034451:155034720:155034772,	155034380	155034451	155034404	155034404	Frame_Shift_Del	C	-	p.P794fs
LIHC	TCGA-G3-A3CJ-01	THBS3	ENST00000541990.1	chr1	155174850:155175107:155175983:155176197:155177588:155177688,	155175984	155176197	155176079	155176079	Frame_Shift_Del	G	-	p.P66fs
LIHC	TCGA-G3-A3CJ-01	THBS3	ENST00000368378.3	chr1	155174850:155175107:155175990:155176197:155177588:155177688,	155175991	155176197	155176079	155176079	Frame_Shift_Del	G	-	p.P66fs
LIHC	TCGA-G3-A3CJ-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155264272:155264543:155264906:155265093:155265227:155265359,	155264907	155265093	155264957	155264957	Frame_Shift_Del	C	-	p.G184fs
LIHC	TCGA-G3-A3CJ-01	FDPS	ENST00000368356.4	chr1	155278775:155278867:155279579:155279756:155279833:155279996,155278704:155278756:155279579:155279756:155279833:155279996,	155279580	155279756	155279584	155279584	Frame_Shift_Del	C	-	p.P2fs
LIHC	TCGA-G3-A3CJ-01	FDPS	ENST00000491013.1	chr1	155278775:155278867:155279543:155279756:155279833:155279996,155278704:155278756:155279543:155279756:155279833:155279996,	155279544	155279756	155279584	155279584	Frame_Shift_Del	C	-	p.P2fs
LIHC	TCGA-G3-A3CJ-01	RUSC1	ENST00000467820.1,ENST00000368349.4,ENST00000292254.4,ENST00000368347.4,ENST00000490373.1,ENST00000489860.1,ENST00000468764.1,ENST00000473331.1,ENST00000492536.1,ENST00000497930.1,ENST00000368352.5	chr1	155295391:155295463:155295654:155295701:155296370:155296521,	155295655	155295701	155295677	155295677	Frame_Shift_Del	T	-	p.F613fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155319117:155319250:155319332:155319387:155322496:155322649,	155319333	155319387	155319354	155319354	Frame_Shift_Del	A	-	p.L2472fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3	chr1	155349833:155349907:155365249:155365344:155385534:155385714,	155365250	155365344	155365342	155365342	Frame_Shift_Del	G	-	p.P2004fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408193	155408193	Frame_Shift_Del	C	-	p.G1918fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408195	155408195	Frame_Shift_Del	T	-	p.K1917fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155408117:155408859:155429587:155429689:155447676:155452240,	155429588	155429689	155429618	155429618	Frame_Shift_Del	T	-	p.R1686fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155447781	155447781	Frame_Shift_Del	A	-	p.L1627fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448618	155448618	Frame_Shift_Del	T	-	p.K1349fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448980	155448980	Frame_Shift_Del	A	-	p.F1227fs
LIHC	TCGA-G3-A3CJ-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450988	155450988	Frame_Shift_Del	G	-	p.P558fs
LIHC	TCGA-G3-A3CJ-01	YY1AP1	ENST00000295566.4,ENST00000405763.3,ENST00000476027.1,ENST00000438245.2,ENST00000368339.5,ENST00000361140.4,ENST00000454523.1,ENST00000354691.5,ENST00000404643.1,ENST00000355499.4,ENST00000368340.5	chr1	155649718:155649799:155650206:155650247:155657861:155657992,155649199:155649303:155650206:155650247:155658449:155658477,155649199:155649303:155650206:155650247:155658720:155658764,155649199:155649303:155650206:155650247:155657861:155657992,	155650207	155650247	155650213	155650213	Frame_Shift_Del	A	-	p.F143fs
LIHC	TCGA-G3-A3CJ-01	YY1AP1	ENST00000407221.1,ENST00000311573.5	chr1	155649199:155649303:155650172:155650247:155657861:155657992,	155650173	155650247	155650213	155650213	Frame_Shift_Del	A	-	p.F143fs
LIHC	TCGA-G3-A3CJ-01	DAP3	ENST00000465375.1,ENST00000462002.1,ENST00000471523.1,ENST00000343043.3,ENST00000368336.5,ENST00000497826.1,ENST00000496863.1,ENST00000471214.1,ENST00000463575.1	chr1	155679563:155679615:155686796:155686919:155691307:155691409,	155686797	155686919	155686811	155686811	Frame_Shift_Del	T	-	p.R20fs
LIHC	TCGA-G3-A3CJ-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155722994:155723205:155724165:155724279:155726748:155726868,	155724166	155724279	155724258	155724258	Frame_Shift_Del	C	-	p.A1847fs
LIHC	TCGA-G3-A3CJ-01	GON4L	ENST00000460075.1,ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155724165:155724279:155726748:155726868:155726970:155727114,	155726749	155726868	155726776	155726776	Frame_Shift_Del	T	-	p.K1830fs
LIHC	TCGA-G3-A3CJ-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735602	155735602	Frame_Shift_Del	G	-	p.P1221fs
LIHC	TCGA-G3-A3CJ-01	GON4L	ENST00000490801.1	chr1	155740857:155741008:155742856:155743001:155744753:155744964,	155742857	155743001	155742941	155742941	Frame_Shift_Del	A	-	p.F804fs
LIHC	TCGA-G3-A3CJ-01	SSR2	ENST00000532074.1	chr1	155981600:155981678:155984751:155984864:155988060:155988159,	155984752	155984864	155984844	155984844	Frame_Shift_Del	G	-	p.H91fs
LIHC	TCGA-G3-A3CJ-01	SSR2	ENST00000484320.2	chr1	155981600:155981678:155984751:155984860:155988060:155988159,155981619:155981678:155984751:155984860:155987922:155988159,	155984752	155984860	155984844	155984844	Frame_Shift_Del	G	-	p.H91fs
LIHC	TCGA-G3-A3CJ-01	UBQLN4	ENST00000368309.3	chr1	156020081:156020344:156020900:156021118:156021496:156021584,	156020901	156021118	156020923	156020923	Frame_Shift_Del	G	-	p.P152fs
LIHC	TCGA-G3-A3CJ-01	LMNA	ENST00000496738.1	chr1	156106903:156107023:156107444:156108548:156108870:156108893,	156107445	156108548	156108299	156108299	Frame_Shift_Del	G	-	p.S573fs
LIHC	TCGA-G3-A3CJ-01	LMNA	ENST00000368299.3	chr1	156107444:156107534:156108278:156108398:156108870:156108893,	156108279	156108398	156108299	156108299	Frame_Shift_Del	G	-	p.S573fs
LIHC	TCGA-G3-A3CJ-01	LMNA	ENST00000508500.1,ENST00000347559.2	chr1	156107444:156107534:156108278:156108548:156108870:156108893,156106903:156107023:156108278:156108548:156108870:156108893,	156108279	156108548	156108299	156108299	Frame_Shift_Del	G	-	p.S573fs
LIHC	TCGA-G3-A3CJ-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255099	156255099	Frame_Shift_Del	C	-	p.P28fs
LIHC	TCGA-G3-A3CJ-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255099	156255099	Frame_Shift_Del	C	-	p.P28fs
LIHC	TCGA-G3-A3CJ-01	CCT3	ENST00000368258.3,ENST00000368261.3,ENST00000472765.2,ENST00000295688.3,ENST00000368262.3,ENST00000368259.2	chr1	156280348:156280480:156280740:156280986:156281831:156282012,	156280741	156280986	156280773	156280773	Frame_Shift_Del	C	-	p.A457fs
LIHC	TCGA-G3-A3CJ-01	MEF2D	ENST00000493077.1,ENST00000464356.2,ENST00000360595.3,ENST00000368240.2,ENST00000348159.4,ENST00000340875.5,ENST00000353795.3	chr1	156446803:156446994:156449081:156449138:156449377:156449572,	156449082	156449138	156449123	156449123	Frame_Shift_Del	C	-	p.G208fs
LIHC	TCGA-G3-A3CJ-01	MEF2D	ENST00000360595.3,ENST00000368240.2,ENST00000348159.4	chr1	156449377:156449588:156450625:156450763:156452228:156452432,	156450626	156450763	156450760	156450760	Frame_Shift_Del	G	-	p.L88fs
LIHC	TCGA-G3-A3CJ-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156504954:156505039:156506972:156507113:156508600:156508653,	156506973	156507113	156507003	156507003	Frame_Shift_Del	A	-	p.L1131fs
LIHC	TCGA-G3-A3CJ-01	BCAN	ENST00000329117.5	chr1	156621247:156621481:156622039:156622684:156626073:156626181,	156622040	156622684	156622514	156622514	Frame_Shift_Del	C	-	p.A591fs
LIHC	TCGA-G3-A3CJ-01	RRNAD1	ENST00000368216.4,ENST00000519086.1	chr1	156698800:156699007:156701782:156701907:156702072:156702265,	156701783	156701907	156701894	156701894	Frame_Shift_Del	G	-	p.G75fs
LIHC	TCGA-G3-A3CJ-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708387	156708387	Frame_Shift_Del	G	-	p.P37fs
LIHC	TCGA-G3-A3CJ-01	SH2D2A	ENST00000368198.3,ENST00000368199.3,ENST00000392306.2	chr1	156776966:156777137:156778994:156779282:156779452:156779599,	156778995	156779282	156779227	156779227	Frame_Shift_Del	G	-	p.P267fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF11	ENST00000315174.8,ENST00000368194.3,ENST00000361409.2	chr1	156914810:156914989:156915836:156915954:156916453:156916579,	156915837	156915954	156915938	156915938	Frame_Shift_Del	G	-	p.P904fs
LIHC	TCGA-G3-A3CJ-01	FCRL5	ENST00000368191.3,ENST00000361835.3,ENST00000368190.3,ENST00000356953.4	chr1	157497406:157497685:157504403:157504682:157508875:157509154,	157504404	157504682	157504411	157504411	Frame_Shift_Del	A	-	p.F558fs
LIHC	TCGA-G3-A3CJ-01	FCRL3	ENST00000496769.1,ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157667448:157667709:157668173:157668419,157667005:157667214:157667448:157667709:157668173:157668419,	157667449	157667709	157667628	157667628	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-G3-A3CJ-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157667628	157667628	Frame_Shift_Del	T	-	p.N127fs
LIHC	TCGA-G3-A3CJ-01	FCRL2	ENST00000392274.3,ENST00000361516.3	chr1	157736644:157736761:157737020:157737299:157738203:157738491,	157737021	157737299	157737197	157737197	Frame_Shift_Del	G	-	p.P329fs
LIHC	TCGA-G3-A3CJ-01	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324451	158324451	Frame_Shift_Del	T	-	p.F115fs
LIHC	TCGA-G3-A3CJ-01	CD1E	ENST00000368165.3,ENST00000452291.2,ENST00000444681.2,ENST00000368167.3	chr1	158325621:158325730:158326287:158326381:158326553:158326682,158325683:158325791:158326287:158326381:158326553:158326682,158325616:158325895:158326287:158326381:158326553:158326682,158325616:158325895:158326287:158326381:158326517:158326682,	158326288	158326381	158326370	158326370	Frame_Shift_Del	A	-	p.L230fs
LIHC	TCGA-G3-A3CJ-01	IFI16	ENST00000430894.2,ENST00000359709.3,ENST00000295809.7	chr1	159002313:159002481:159019221:159019389:159021468:159021732,159015086:159015254:159019221:159019389:159021468:159021732,	159019222	159019389	159019243	159019243	Frame_Shift_Del	A	-	p.K507fs
LIHC	TCGA-G3-A3CJ-01	FCRL6	ENST00000321935.6,ENST00000368106.3,ENST00000339348.5	chr1	159777967:159778234:159778750:159779035:159779191:159779212,	159778751	159779035	159778907	159778907	Frame_Shift_Del	G	-	p.R166fs
LIHC	TCGA-G3-A3CJ-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898498	159898498	Frame_Shift_Del	C	-	p.A894fs
LIHC	TCGA-G3-A3CJ-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159904470:159904612:159906188:159906306:159906543:159906681,	159906189	159906306	159906255	159906255	Frame_Shift_Del	C	-	p.V203fs
LIHC	TCGA-G3-A3CJ-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912846	159912846	Frame_Shift_Del	G	-	p.L52fs
LIHC	TCGA-G3-A3CJ-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160295332:160295442:160302237:160302347:160303392:160303469,	160302238	160302347	160302299	160302299	Frame_Shift_Del	G	-	p.P145fs
LIHC	TCGA-G3-A3CJ-01	VANGL2	ENST00000368061.2	chr1	160385437:160385698:160385851:160385972:160388791:160389399,	160385852	160385972	160385934	160385934	Frame_Shift_Del	C	-	p.P52fs
LIHC	TCGA-G3-A3CJ-01	CD244	ENST00000368034.4,ENST00000368033.3,ENST00000368032.2,ENST00000322302.7,ENST00000492063.1	chr1	160803840:160803906:160805984:160806044:160808240:160808308,	160805985	160806044	160806027	160806027	Frame_Shift_Del	A	-	p.F284fs
LIHC	TCGA-G3-A3CJ-01	ITLN1	ENST00000326245.3	chr1	160846328:160846606:160849100:160849204:160850377:160850498,	160849101	160849204	160849202	160849202	Frame_Shift_Del	C	-	p.E230fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP30	ENST00000461003.1,ENST00000368016.3,ENST00000368013.3	chr1	161024412:161024495:161026177:161026322:161029403:161029506,	161026178	161026322	161026210	161026210	Frame_Shift_Del	G	-	p.L106fs
LIHC	TCGA-G3-A3CJ-01	PPOX	ENST00000470607.1,ENST00000479246.1,ENST00000497522.1,ENST00000539753.1,ENST00000544598.1,ENST00000432542.2,ENST00000468968.2,ENST00000367999.4	chr1	161136300:161136462:161136629:161136724:161140409:161140559,161136269:161136401:161136629:161136724:161136889:161137024,161136300:161136462:161136629:161136724:161136889:161137023,	161136630	161136724	161136715	161136715	Frame_Shift_Del	C	-	p.C26fs
LIHC	TCGA-G3-A3CJ-01	PPOX	ENST00000479246.1,ENST00000352210.5,ENST00000367999.4	chr1	161137160:161137276:161137784:161137917:161138782:161138973,161137160:161137276:161137784:161137917:161138221:161138335,	161137785	161137917	161137804	161137804	Frame_Shift_Del	C	-	p.P121fs
LIHC	TCGA-G3-A3CJ-01	B4GALT3	ENST00000319769.5,ENST00000493164.1	chr1	161144841:161145018:161145597:161145864:161146223:161146298,	161145598	161145864	161145762	161145762	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-G3-A3CJ-01	B4GALT3	ENST00000367998.1,ENST00000496313.1,ENST00000487004.1	chr1	161144841:161145018:161145597:161145885:161146223:161146298,	161145598	161145885	161145762	161145762	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-G3-A3CJ-01	MPZ	ENST00000491222.2,ENST00000336559.4,ENST00000533357.1,ENST00000360451.6,ENST00000463290.1	chr1	161276118:161276254:161276497:161276711:161277047:161277214,	161276498	161276711	161276636	161276636	Frame_Shift_Del	C	-	p.D104fs
LIHC	TCGA-G3-A3CJ-01	FCGR2A	ENST00000536731.1	chr1	161475776:161475797:161476123:161476497:161479609:161479689,	161476124	161476497	161476156	161476156	Frame_Shift_Del	C	-	p.P48fs
LIHC	TCGA-G3-A3CJ-01	FCGR2A	ENST00000367972.4,ENST00000467654.1	chr1	161475776:161475797:161476126:161476381:161479609:161479689,	161476127	161476381	161476156	161476156	Frame_Shift_Del	C	-	p.P48fs
LIHC	TCGA-G3-A3CJ-01	FCGR2A	ENST00000483665.2	chr1	161475776:161475797:161476126:161476497:161479609:161479689,	161476127	161476497	161476156	161476156	Frame_Shift_Del	C	-	p.P48fs
LIHC	TCGA-G3-A3CJ-01	FCGR2A	ENST00000271450.6	chr1	161475776:161475797:161476123:161476381:161479609:161479689,	161476124	161476381	161476156	161476156	Frame_Shift_Del	C	-	p.P48fs
LIHC	TCGA-G3-A3CJ-01	FCRLA	ENST00000540926.1	chr1	161676761:161677133:161680504:161680522:161680549:161680702,	161680505	161680522	161680516	161680516	Frame_Shift_Del	T	-	p.F31fs
LIHC	TCGA-G3-A3CJ-01	FCRLA	ENST00000367957.2	chr1	161680997:161681264:161681723:161682008:161682874:161683242,161680549:161680702:161681723:161682008:161682874:161683242,161677084:161677133:161681723:161682008:161682874:161683242,	161681724	161682008	161681768	161681768	Frame_Shift_Del	C	-	p.P205fs
LIHC	TCGA-G3-A3CJ-01	FCRLA	ENST00000470841.1	chr1	161680549:161680702:161680997:161682008:161682874:161683242,	161680998	161682008	161681768	161681768	Frame_Shift_Del	C	-	p.P205fs
LIHC	TCGA-G3-A3CJ-01	DDR2	ENST00000446985.1,ENST00000367921.3,ENST00000415555.1	chr1	162625000:162625164:162688826:162688935:162722884:162722987,	162688827	162688935	162688878	162688878	Frame_Shift_Del	T	-	p.L9fs
LIHC	TCGA-G3-A3CJ-01	HSD17B7	ENST00000367913.1	chr1	162762448:162762652:162766374:162766467:162767617:162767939,	162766375	162766467	162766402	162766402	Frame_Shift_Del	A	-	p.L89fs
LIHC	TCGA-G3-A3CJ-01	MGST3	ENST00000495447.1	chr1	165600494:165600530:165618991:165619201:165620250:165620324,	165618992	165619201	165619170	165619170	Frame_Shift_Del	T	-	p.V29fs
LIHC	TCGA-G3-A3CJ-01	MGST3	ENST00000488688.1,ENST00000367888.4	chr1	165600494:165600530:165619077:165619201:165620250:165620324,	165619078	165619201	165619170	165619170	Frame_Shift_Del	T	-	p.V29fs
LIHC	TCGA-G3-A3CJ-01	ALDH9A1	ENST00000471457.1	chr1	165652217:165652347:165664488:165664634:165667614:165667750,	165664489	165664634	165664554	165664554	Frame_Shift_Del	T	-	p.I88fs
LIHC	TCGA-G3-A3CJ-01	TMCO1	ENST00000476143.2,ENST00000367881.5,ENST00000464650.1,ENST00000392129.6,ENST00000580248.1	chr1	165697322:165697358:165712403:165712548:165721338:165721406,	165712404	165712548	165712438	165712438	Frame_Shift_Del	A	-	p.F196fs
LIHC	TCGA-G3-A3CJ-01	TMCO1	ENST00000367881.5,ENST00000464650.1,ENST00000392129.6,ENST00000580248.1,ENST00000481278.1	chr1	165723464:165723511:165728761:165728821:165737428:165737481,	165728762	165728821	165728770	165728770	Frame_Shift_Del	T	-	p.K119fs
LIHC	TCGA-G3-A3CJ-01	POGK	ENST00000537173.1	chr1	166810191:166810325:166818174:166819660:166821821:166822397,	166818175	166819660	166819131	166819131	Frame_Shift_Del	G	-	p.G439fs
LIHC	TCGA-G3-A3CJ-01	ILDR2	ENST00000469934.2,ENST00000529071.1,ENST00000271417.3	chr1	166896303:166896417:166904537:166904714:166905827:166905974,	166904538	166904714	166904683	166904683	Frame_Shift_Del	C	-	p.G245fs
LIHC	TCGA-G3-A3CJ-01	ADCY10	ENST00000367848.1,ENST00000485964.1,ENST00000545172.1,ENST00000367851.4	chr1	167793888:167794093:167798504:167798661:167802224:167802400,	167798505	167798661	167798580	167798580	Frame_Shift_Del	A	-	p.F1133fs
LIHC	TCGA-G3-A3CJ-01	ADCY10	ENST00000367848.1,ENST00000485964.1,ENST00000545172.1,ENST00000367851.4	chr1	167793888:167794093:167798504:167798661:167802224:167802400,	167798505	167798661	167798639	167798639	Frame_Shift_Del	A	-	p.Y1114fs
LIHC	TCGA-G3-A3CJ-01	ADCY10	ENST00000367848.1,ENST00000545172.1,ENST00000367851.4	chr1	167830108:167830301:167839494:167839648:167844368:167844424,	167839495	167839648	167839544	167839544	Frame_Shift_Del	T	-	p.S431fs
LIHC	TCGA-G3-A3CJ-01	DCAF6	ENST00000367843.3,ENST00000312263.6,ENST00000367840.3,ENST00000432587.2	chr1	168034827:168034984:168035614:168035703:168037595:168037701,	168035615	168035703	168035678	168035678	Frame_Shift_Del	T	-	p.I887fs
LIHC	TCGA-G3-A3CJ-01	GPR161	ENST00000361697.2,ENST00000537209.1	chr1	168065745:168066470:168073714:168074132:168104143:168104274,	168073715	168074132	168073969	168073969	Frame_Shift_Del	A	-	p.F40fs
LIHC	TCGA-G3-A3CJ-01	TIPRL	ENST00000367833.2	chr1	168160606:168160738:168165784:168165880:168168156:168168219,	168165785	168165880	168165839	168165839	Frame_Shift_Del	G	-	p.G191fs
LIHC	TCGA-G3-A3CJ-01	NME7	ENST00000480478.1	chr1	169272382:169272433:169279207:169279318:169292354:169292521,169272382:169272433:169279207:169279318:169336945:169336968,	169279208	169279318	169279256	169279256	Frame_Shift_Del	T	-	p.N114fs
LIHC	TCGA-G3-A3CJ-01	BLZF1	ENST00000367808.3,ENST00000426663.1,ENST00000329281.2	chr1	169345777:169346217:169347567:169347767:169349718:169349800,	169347568	169347767	169347607	169347607	Frame_Shift_Del	G	-	p.G170fs
LIHC	TCGA-G3-A3CJ-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351411	169351411	Frame_Shift_Del	A	-	p.A303fs
LIHC	TCGA-G3-A3CJ-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169497152:169497332:169498845:169499056:169500023:169500260,	169498846	169499056	169498862	169498862	Frame_Shift_Del	T	-	p.K1806fs
LIHC	TCGA-G3-A3CJ-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510943	169510943	Frame_Shift_Del	T	-	p.T1134fs
LIHC	TCGA-G3-A3CJ-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169511902	169511902	Frame_Shift_Del	G	-	p.P814fs
LIHC	TCGA-G3-A3CJ-01	SELP	ENST00000426706.2,ENST00000263686.6	chr1	169578741:169578927:169580729:169580915:169581454:169581640,	169580730	169580915	169580887	169580887	Frame_Shift_Del	G	-	p.P330fs
LIHC	TCGA-G3-A3CJ-01	SELE	ENST00000367774.1,ENST00000367782.4,ENST00000367777.1,ENST00000367776.1,ENST00000333360.7,ENST00000367779.4,ENST00000367781.4	chr1	169698628:169698814:169699572:169699758:169700975:169701083,	169699573	169699758	169699633	169699633	Frame_Shift_Del	T	-	p.M219fs
LIHC	TCGA-G3-A3CJ-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169806067:169806253:169811557:169811680:169812814:169812910,	169811558	169811680	169811662	169811662	Frame_Shift_Del	T	-	p.A610fs
LIHC	TCGA-G3-A3CJ-01	SCYL3	ENST00000470238.1	chr1	169838068:169838180:169839395:169839498:169842836:169842893,169838068:169838269:169839395:169839498:169842836:169842893,	169839396	169839498	169839456	169839456	Frame_Shift_Del	G	-	p.R189fs
LIHC	TCGA-G3-A3CJ-01	GORAB	ENST00000367762.1	chr1	170501291:170501425:170508350:170508708:170511631:170511733,	170508351	170508708	170508526	170508526	Frame_Shift_Del	T	-	p.P104fs
LIHC	TCGA-G3-A3CJ-01	GORAB	ENST00000367762.1	chr1	170501291:170501425:170508350:170508708:170511631:170511733,	170508351	170508708	170508641	170508641	Frame_Shift_Del	G	-	p.G143fs
LIHC	TCGA-G3-A3CJ-01	FMO3	ENST00000542847.1	chr1	171060040:171060105:171061793:171061931:171070220:171070347,	171061794	171061931	171061916	171061916	Frame_Shift_Del	C	-	p.G39fs
LIHC	TCGA-G3-A3CJ-01	FMO3	ENST00000542847.1	chr1	171060040:171060105:171061793:171061931:171070220:171070347,	171061794	171061931	171061926	171061926	Frame_Shift_Del	T	-	p.F43fs
LIHC	TCGA-G3-A3CJ-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171514617:171514826:171519224:171519379:171526378:171527282,	171519225	171519379	171519317	171519317	Frame_Shift_Del	A	-	p.K1690fs
LIHC	TCGA-G3-A3CJ-01	VAMP4	ENST00000474047.1,ENST00000236192.7,ENST00000482519.1	chr1	171688310:171688361:171697663:171697710:171707488:171707603,	171697664	171697710	171697666	171697666	Frame_Shift_Del	A	-	p.F37fs
LIHC	TCGA-G3-A3CJ-01	DNM3	ENST00000355305.5,ENST00000358155.4,ENST00000367731.1	chr1	172356327:172356499:172357712:172357949:172376911:172377494,	172357713	172357949	172357783	172357783	Frame_Shift_Del	G	-	p.G786fs
LIHC	TCGA-G3-A3CJ-01	DNM3	ENST00000355305.5,ENST00000358155.4,ENST00000367731.1	chr1	172356327:172356499:172357712:172357949:172376911:172377494,	172357713	172357949	172357818	172357818	Frame_Shift_Del	C	-	p.G797fs
LIHC	TCGA-G3-A3CJ-01	ANKRD45	ENST00000333279.2	chr1	173593925:173594064:173596203:173596298:173615984:173616152,	173596204	173596298	173596225	173596225	Frame_Shift_Del	C	-	p.G190fs
LIHC	TCGA-G3-A3CJ-01	KLHL20	ENST00000546011.1,ENST00000209884.4	chr1	173722351:173722446:173725061:173725177:173726114:173726298,	173725062	173725177	173725081	173725081	Frame_Shift_Del	A	-	p.K291fs
LIHC	TCGA-G3-A3CJ-01	CENPL	ENST00000356198.2	chr1	173769549:173769657:173772100:173772643:173776404:173776448,173769549:173769657:173772100:173772643:173775576:173775714,	173772101	173772643	173772106	173772106	Frame_Shift_Del	T	-	p.I366fs
LIHC	TCGA-G3-A3CJ-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173802513:173802637:173803610:173803657:173806077:173806184,	173803611	173803657	173803629	173803629	Frame_Shift_Del	C	-	p.T212fs
LIHC	TCGA-G3-A3CJ-01	RC3H1	ENST00000258349.4,ENST00000367696.2,ENST00000367694.2	chr1	173916506:173916720:173921123:173921276:173930214:173930382,	173921124	173921276	173921233	173921233	Frame_Shift_Del	T	-	p.N805fs
LIHC	TCGA-G3-A3CJ-01	RABGAP1L	ENST00000347255.2,ENST00000392064.2,ENST00000325589.5,ENST00000489615.1,ENST00000367688.3,ENST00000469553.2,ENST00000367687.1,ENST00000367686.3	chr1	174951970:174952042:174957777:174957975:174958985:174959478,	174957778	174957975	174957967	174957967	Frame_Shift_Del	A	-	p.K318fs
LIHC	TCGA-G3-A3CJ-01	CACYBP	ENST00000367679.2,ENST00000473925.1	chr1	174969316:174969331:174973749:174973969:174975880:174975907,	174973750	174973969	174973954	174973954	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-G3-A3CJ-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175331798:175331945:175332843:175332963:175334145:175334415,	175332844	175332963	175332951	175332951	Frame_Shift_Del	G	-	p.P867fs
LIHC	TCGA-G3-A3CJ-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175348687:175348873:175355167:175355437:175360423:175360574,	175355168	175355437	175355365	175355365	Frame_Shift_Del	G	-	p.P527fs
LIHC	TCGA-G3-A3CJ-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175365757:175365943:175372275:175372752:175375351:175375500,	175372276	175372752	175372523	175372523	Frame_Shift_Del	C	-	p.G243fs
LIHC	TCGA-G3-A3CJ-01	RASAL2	ENST00000367649.3	chr1	178421571:178421787:178423581:178423783:178425855:178426034,	178423582	178423783	178423621	178423621	Frame_Shift_Del	T	-	p.D665fs
LIHC	TCGA-G3-A3CJ-01	RALGPS2	ENST00000495034.1,ENST00000367634.2,ENST00000367635.3	chr1	178745816:178745956:178753552:178753657:178754691:178754742,	178753553	178753657	178753601	178753601	Frame_Shift_Del	A	-	p.K36fs
LIHC	TCGA-G3-A3CJ-01	RALGPS2	ENST00000495034.1,ENST00000324778.5,ENST00000367634.2,ENST00000367635.3	chr1	178777179:178777263:178780449:178780539:178790746:178790839,	178780450	178780539	178780494	178780494	Frame_Shift_Del	A	-	p.L114fs
LIHC	TCGA-G3-A3CJ-01	ABL2	ENST00000392043.3,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3	chr1	179084012:179084165:179086466:179086651:179087721:179087899,	179086467	179086651	179086603	179086603	Frame_Shift_Del	T	-	p.K424fs
LIHC	TCGA-G3-A3CJ-01	SOAT1	ENST00000540564.1	chr1	179292571:179292630:179304640:179304792:179306971:179307031,179271811:179271937:179304640:179304792:179306971:179307031,	179304641	179304792	179304653	179304653	Frame_Shift_Del	T	-	p.F65fs
LIHC	TCGA-G3-A3CJ-01	SOAT1	ENST00000367619.3,ENST00000535686.1,ENST00000539888.1,ENST00000540564.1	chr1	179319430:179319566:179320451:179320597:179322719:179322942,	179320452	179320597	179320592	179320592	Frame_Shift_Del	A	-	p.K531fs
LIHC	TCGA-G3-A3CJ-01	CEP350	ENST00000429851.1,ENST00000367607.3	chr1	180053152:180053313:180056712:180056852:180059848:180059883,	180056713	180056852	180056723	180056723	Frame_Shift_Del	A	-	p.E2099fs
LIHC	TCGA-G3-A3CJ-01	QSOX1	ENST00000367600.5,ENST00000367602.3	chr1	180144455:180144501:180145065:180145168:180147928:180148019,	180145066	180145168	180145137	180145137	Frame_Shift_Del	C	-	p.P163fs
LIHC	TCGA-G3-A3CJ-01	QSOX1	ENST00000367600.5,ENST00000367602.3	chr1	180144455:180144501:180145065:180145168:180147928:180148019,	180145066	180145168	180145149	180145149	Frame_Shift_Del	C	-	p.P167fs
LIHC	TCGA-G3-A3CJ-01	QSOX1	ENST00000367600.5,ENST00000367602.3	chr1	180155187:180155317:180158686:180158809:180159567:180159715,	180158687	180158809	180158768	180158768	Frame_Shift_Del	C	-	p.P367fs
LIHC	TCGA-G3-A3CJ-01	QSOX1	ENST00000367600.5,ENST00000367602.3	chr1	180158686:180158809:180159567:180159715:180163347:180163527,	180159568	180159715	180159689	180159689	Frame_Shift_Del	A	-	p.Q421fs
LIHC	TCGA-G3-A3CJ-01	MR1	ENST00000367579.3,ENST00000367580.5	chr1	181019281:181019422:181021370:181021646:181022708:181022813,	181021371	181021646	181021373	181021373	Frame_Shift_Del	C	-	p.P204fs
LIHC	TCGA-G3-A3CJ-01	CACNA1E	ENST00000357570.5,ENST00000367573.2,ENST00000360108.3	chr1	181759580:181759692:181762800:181762929:181763999:181764180,	181762801	181762929	181762834	181762834	Frame_Shift_Del	C	-	p.P1929fs
LIHC	TCGA-G3-A3CJ-01	RGS8	ENST00000258302.4,ENST00000367556.1,ENST00000367557.4,ENST00000483095.2	chr1	182615869:182616052:182617271:182617438:182635103:182635168,	182617272	182617438	182617296	182617296	Frame_Shift_Del	A	-	p.F112fs
LIHC	TCGA-G3-A3CJ-01	NPL	ENST00000367554.3	chr1	182763490:182763574:182772832:182772906:182775279:182775367,182758910:182758940:182772832:182772906:182775279:182775367,	182772833	182772906	182772901	182772901	Frame_Shift_Del	T	-	p.I46fs
LIHC	TCGA-G3-A3CJ-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852454:182852503:182852654:182852770:182853747:182853948,	182852655	182852770	182852698	182852698	Frame_Shift_Del	C	-	p.T1063fs
LIHC	TCGA-G3-A3CJ-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000419169.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183506279:183506350:183507514:183507575:183510118:183510238,	183507515	183507575	183507550	183507550	Frame_Shift_Del	T	-	p.F453fs
LIHC	TCGA-G3-A3CJ-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515137	183515137	Frame_Shift_Del	C	-	p.P787fs
LIHC	TCGA-G3-A3CJ-01	SMG7	ENST00000508461.1,ENST00000507469.1,ENST00000367537.3	chr1	183515100:183515472:183516237:183516387:183518342:183518423,	183516238	183516387	183516314	183516314	Frame_Shift_Del	T	-	p.I923fs
LIHC	TCGA-G3-A3CJ-01	SMG7	ENST00000508461.1,ENST00000507469.1,ENST00000367537.3	chr1	183515100:183515472:183516237:183516387:183518342:183518423,	183516238	183516387	183516383	183516383	Frame_Shift_Del	T	-	p.L946fs
LIHC	TCGA-G3-A3CJ-01	SMG7	ENST00000508461.1,ENST00000515829.2,ENST00000507469.1,ENST00000347615.2,ENST00000456731.2,ENST00000367537.3	chr1	183518342:183518423:183518898:183519058:183519885:183520056,	183518899	183519058	183518941	183518941	Frame_Shift_Del	A	-	p.K989fs
LIHC	TCGA-G3-A3CJ-01	NCF2	ENST00000367535.3,ENST00000418089.1,ENST00000413720.1,ENST00000367536.1	chr1	183536338:183536480:183538276:183538320:183539914:183539974,	183538277	183538320	183538289	183538289	Frame_Shift_Del	G	-	p.P189fs
LIHC	TCGA-G3-A3CJ-01	NCF2	ENST00000367535.3,ENST00000418089.1,ENST00000413720.1,ENST00000367536.1	chr1	183536338:183536480:183538276:183538320:183539914:183539974,	183538277	183538320	183538298	183538298	Frame_Shift_Del	G	-	p.P186fs
LIHC	TCGA-G3-A3CJ-01	C1orf21	ENST00000367514.3,ENST00000235307.6	chr1	184559881:184559949:184567534:184567595:184588651:184589070,	184567535	184567595	184567582	184567582	Frame_Shift_Del	A	-	p.E105fs
LIHC	TCGA-G3-A3CJ-01	TRMT1L	ENST00000367506.5,ENST00000367504.3	chr1	185106737:185106928:185108498:185108711:185109104:185109354,	185108499	185108711	185108581	185108581	Frame_Shift_Del	G	-	p.R259fs
LIHC	TCGA-G3-A3CJ-01	SWT1	ENST00000367500.4,ENST00000367501.3	chr1	185159680:185159774:185171785:185171931:185173831:185173995,	185171786	185171931	185171808	185171808	Frame_Shift_Del	A	-	p.K516fs
LIHC	TCGA-G3-A3CJ-01	IVNS1ABP	ENST00000392007.3,ENST00000367498.3,ENST00000459929.1,ENST00000468217.1,ENST00000475046.1,ENST00000480769.1,ENST00000494880.1	chr1	185269228:185269262:185269348:185269475:185269568:185269690,	185269349	185269475	185269447	185269447	Frame_Shift_Del	T	-	p.N424fs
LIHC	TCGA-G3-A3CJ-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186086125:186086247:186086590:186086755:186088322:186088430,	186086591	186086755	186086642	186086642	Frame_Shift_Del	C	-	p.A3912fs
LIHC	TCGA-G3-A3CJ-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186086125:186086247:186086590:186086755:186088322:186088430,	186086591	186086755	186086701	186086701	Frame_Shift_Del	A	-	p.K3932fs
LIHC	TCGA-G3-A3CJ-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186122957:186123119:186134242:186134305:186135315:186135435,	186134243	186134305	186134295	186134295	Frame_Shift_Del	T	-	p.P5103fs
LIHC	TCGA-G3-A3CJ-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186134245:186134305:186135315:186135435:186135939:186136074,	186135316	186135435	186135371	186135371	Frame_Shift_Del	G	-	p.M5125fs
LIHC	TCGA-G3-A3CJ-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186276974	186276974	Frame_Shift_Del	C	-	p.T708fs
LIHC	TCGA-G3-A3CJ-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277954	186277954	Frame_Shift_Del	A	-	p.K1036fs
LIHC	TCGA-G3-A3CJ-01	PRG4	ENST00000367483.4,ENST00000367486.3,ENST00000367485.4,ENST00000445192.2,ENST00000367484.3	chr1	186278924:186279002:186280165:186280302:186280571:186280728,	186280166	186280302	186280232	186280232	Frame_Shift_Del	G	-	p.W1189fs
LIHC	TCGA-G3-A3CJ-01	TPR	ENST00000367478.4	chr1	186303456:186303665:186304199:186304261:186304469:186304675,	186304200	186304261	186304228	186304228	Frame_Shift_Del	T	-	p.T1650fs
LIHC	TCGA-G3-A3CJ-01	KCNT2	ENST00000610076.1	chr1	196309618:196309700:196311208:196311379:196342269:196342378,	196311209	196311379	196311262	196311262	Frame_Shift_Del	A	-	p.F500fs
LIHC	TCGA-G3-A3CJ-01	KCNT2	ENST00000294725.9,ENST00000367433.5,ENST00000451324.2,ENST00000498426.1	chr1	196309618:196309700:196311208:196311358:196342269:196342378,	196311209	196311358	196311262	196311262	Frame_Shift_Del	A	-	p.F500fs
LIHC	TCGA-G3-A3CJ-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196697481:196697652:196705953:196706136:196706604:196706790,	196705954	196706136	196706038	196706038	Frame_Shift_Del	A	-	p.E833fs
LIHC	TCGA-G3-A3CJ-01	CFH	ENST00000466229.1,ENST00000367429.4,ENST00000470918.1	chr1	196706037:196706136:196706604:196706790:196709748:196709922,	196706605	196706790	196706674	196706674	Frame_Shift_Del	A	-	p.E889fs
LIHC	TCGA-G3-A3CJ-01	ASPM	ENST00000367408.1,ENST00000294732.7,ENST00000367409.4	chr1	197059979:197060171:197061036:197061186:197062181:197062391,	197061037	197061186	197061094	197061094	Frame_Shift_Del	T	-	p.K3129fs
LIHC	TCGA-G3-A3CJ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071729	197071729	Frame_Shift_Del	T	-	p.T2218fs
LIHC	TCGA-G3-A3CJ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072876	197072876	Frame_Shift_Del	A	-	p.F1835fs
LIHC	TCGA-G3-A3CJ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072972	197072972	Frame_Shift_Del	T	-	p.K1803fs
LIHC	TCGA-G3-A3CJ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073096	197073096	Frame_Shift_Del	A	-	p.F1762fs
LIHC	TCGA-G3-A3CJ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073232	197073232	Frame_Shift_Del	T	-	p.I1717fs
LIHC	TCGA-G3-A3CJ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073699	197073699	Frame_Shift_Del	C	-	p.R1561fs
LIHC	TCGA-G3-A3CJ-01	ASPM	ENST00000294732.7,ENST00000367409.4	chr1	197104225:197104372:197108896:197109001:197111460:197112940,	197108897	197109001	197108900	197108900	Frame_Shift_Del	T	-	p.T675fs
LIHC	TCGA-G3-A3CJ-01	DDX59	ENST00000429498.1,ENST00000331314.6,ENST00000433235.1	chr1	200609938:200610313:200617566:200617695:200618201:200618277,200610118:200610384:200617566:200617695:200618201:200618277,200613496:200613645:200617566:200617695:200618201:200618277,	200617567	200617695	200617603	200617603	Frame_Shift_Del	A	-	p.F520fs
LIHC	TCGA-G3-A3CJ-01	CAMSAP2	ENST00000236925.4,ENST00000413307.2	chr1	200708906:200709094:200729966:200730226:200776503:200776665,	200729967	200730226	200730113	200730113	Frame_Shift_Del	C	-	p.P96fs
LIHC	TCGA-G3-A3CJ-01	IGFN1	ENST00000437879.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201186414:201186588:201187657:201187786:201190571:201190874,	201187658	201187786	201187689	201187689	Frame_Shift_Del	G	-	p.Q3267fs
LIHC	TCGA-G3-A3CJ-01	IGFN1	ENST00000437879.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201194951:201195251:201196009:201196336:201197513:201197776,	201196010	201196336	201196150	201196150	Frame_Shift_Del	C	-	p.P3643fs
LIHC	TCGA-G3-A3CJ-01	IGFN1	ENST00000437879.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201194951:201195251:201196009:201196336:201197513:201197776,	201196010	201196336	201196253	201196253	Frame_Shift_Del	C	-	p.S3677fs
LIHC	TCGA-G3-A3CJ-01	PKP1	ENST00000352845.3,ENST00000367324.3,ENST00000263946.3	chr1	201289394:201289509:201291105:201291261:201292140:201292317,	201291106	201291261	201291206	201291206	Frame_Shift_Del	C	-	p.A504fs
LIHC	TCGA-G3-A3CJ-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618442	201618442	Frame_Shift_Del	C	-	p.P216fs
LIHC	TCGA-G3-A3CJ-01	NAV1	ENST00000430015.1,ENST00000367295.1,ENST00000490213.1,ENST00000367297.4,ENST00000367296.4,ENST00000469130.1,ENST00000295624.6	chr1	201755677:201755705:201757595:201757766:201758867:201758920,	201757596	201757766	201757621	201757621	Frame_Shift_Del	A	-	p.P1007fs
LIHC	TCGA-G3-A3CJ-01	NAV1	ENST00000430015.1,ENST00000367295.1,ENST00000490213.1,ENST00000367297.4,ENST00000367296.4,ENST00000469130.1,ENST00000295624.6	chr1	201755677:201755705:201757595:201757766:201758867:201758920,	201757596	201757766	201757683	201757683	Frame_Shift_Del	C	-	p.S1028fs
LIHC	TCGA-G3-A3CJ-01	IPO9	ENST00000361565.4	chr1	201827982:201828122:201832575:201832735:201835860:201836087,	201832576	201832735	201832732	201832732	Frame_Shift_Del	G	-	p.W542fs
LIHC	TCGA-G3-A3CJ-01	IPO9	ENST00000361565.4	chr1	201839710:201839986:201840288:201840455:201841955:201842089,	201840289	201840455	201840448	201840448	Frame_Shift_Del	A	-	p.K857fs
LIHC	TCGA-G3-A3CJ-01	PTPN7	ENST00000496197.1,ENST00000308986.5,ENST00000477554.1,ENST00000367279.4,ENST00000477625.1,ENST00000492977.1,ENST00000543735.1,ENST00000480836.1,ENST00000309017.3,ENST00000495688.1	chr1	202122852:202122963:202123313:202123451:202124660:202124737,	202123314	202123451	202123352	202123352	Frame_Shift_Del	G	-	p.L295fs
LIHC	TCGA-G3-A3CJ-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128473	202128473	Frame_Shift_Del	C	-	p.A126fs
LIHC	TCGA-G3-A3CJ-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128473	202128473	Frame_Shift_Del	C	-	p.A126fs
LIHC	TCGA-G3-A3CJ-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128473	202128473	Frame_Shift_Del	C	-	p.A126fs
LIHC	TCGA-G3-A3CJ-01	LGR6	ENST00000367278.3,ENST00000439764.2,ENST00000255432.7	chr1	202274811:202274877:202275995:202276067:202276457:202276529,	202275996	202276067	202276019	202276019	Frame_Shift_Del	G	-	p.W387fs
LIHC	TCGA-G3-A3CJ-01	LGR6	ENST00000487787.1	chr1	202274811:202274877:202275892:202276067:202276457:202276529,	202275893	202276067	202276019	202276019	Frame_Shift_Del	G	-	p.W387fs
LIHC	TCGA-G3-A3CJ-01	KDM5B	ENST00000367265.3,ENST00000235790.4,ENST00000367264.2	chr1	202725485:202725644:202727518:202727638:202729542:202729701,	202727519	202727638	202727546	202727546	Frame_Shift_Del	T	-	p.K390fs
LIHC	TCGA-G3-A3CJ-01	KDM5B	ENST00000367265.3,ENST00000235790.4	chr1	202733176:202733273:202736053:202736188:202742245:202742412,	202736054	202736188	202736085	202736085	Frame_Shift_Del	G	-	p.P227fs
LIHC	TCGA-G3-A3CJ-01	CYB5R1	ENST00000482572.1,ENST00000367249.4,ENST00000446185.1	chr1	202933739:202933823:202934498:202934628:202935014:202935121,	202934499	202934628	202934530	202934530	Frame_Shift_Del	C	-	p.G148fs
LIHC	TCGA-G3-A3CJ-01	TMEM183A	ENST00000468449.1,ENST00000543891.1,ENST00000367242.3	chr1	202977867:202977938:202984016:202984176:202985087:202985222,	202984017	202984176	202984059	202984059	Frame_Shift_Del	T	-	p.I137fs
LIHC	TCGA-G3-A3CJ-01	TMEM183A	ENST00000367242.3	chr1	202985087:202985268:202987608:202987689:202989920:202990076,	202987609	202987689	202987681	202987681	Frame_Shift_Del	A	-	p.K262fs
LIHC	TCGA-G3-A3CJ-01	PPFIA4	ENST00000295706.4,ENST00000600426.1,ENST00000447715.2,ENST00000414050.2	chr1	203018045:203018108:203018803:203018895:203020896:203021005,	203018804	203018895	203018864	203018864	Frame_Shift_Del	G	-	p.G474fs
LIHC	TCGA-G3-A3CJ-01	ATP2B4	ENST00000391954.2,ENST00000367218.3,ENST00000367219.3	chr1	203595927:203596347:203651869:203652526:203667284:203667482,	203651870	203652526	203652515	203652515	Frame_Shift_Del	C	-	p.S61fs
LIHC	TCGA-G3-A3CJ-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816504	203816504	Frame_Shift_Del	A	-	p.E412fs
LIHC	TCGA-G3-A3CJ-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816590	203816590	Frame_Shift_Del	A	-	p.K442fs
LIHC	TCGA-G3-A3CJ-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816753	203816753	Frame_Shift_Del	C	-	p.S495fs
LIHC	TCGA-G3-A3CJ-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091466	204091466	Frame_Shift_Del	C	-	p.R321fs
LIHC	TCGA-G3-A3CJ-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091508	204091508	Frame_Shift_Del	C	-	p.S335fs
LIHC	TCGA-G3-A3CJ-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204210812:204210942:204213991:204214131:204214742:204214854,	204213992	204214131	204214081	204214081	Frame_Shift_Del	G	-	p.L695fs
LIHC	TCGA-G3-A3CJ-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204210812:204210942:204213991:204214131:204214742:204214854,	204213992	204214131	204214118	204214118	Frame_Shift_Del	G	-	p.P682fs
LIHC	TCGA-G3-A3CJ-01	PLEKHA6	ENST00000414478.1	chr1	204230465:204230636:204234069:204234170:204236602:204236675,	204234070	204234170	204234135	204234135	Frame_Shift_Del	G	-	p.L107fs
LIHC	TCGA-G3-A3CJ-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204402443:204402553:204402920:204403077:204403566:204403736,	204402921	204403077	204402947	204402947	Frame_Shift_Del	G	-	p.H1273fs
LIHC	TCGA-G3-A3CJ-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204418312:204418424:204418977:204419145:204423796:204423919,	204418978	204419145	204419065	204419065	Frame_Shift_Del	G	-	p.P717fs
LIHC	TCGA-G3-A3CJ-01	MDM4	ENST00000454264.2	chr1	204507348:204507436:204511911:204512072:204515924:204515960,	204511912	204512072	204512004	204512004	Frame_Shift_Del	T	-	p.F202fs
LIHC	TCGA-G3-A3CJ-01	MDM4	ENST00000391947.2,ENST00000463049.1,ENST00000367182.3,ENST00000470908.1,ENST00000367179.3	chr1	204511916:204512072:204513662:204513812:204515924:204515960,	204513663	204513812	204513708	204513708	Frame_Shift_Del	T	-	p.F240fs
LIHC	TCGA-G3-A3CJ-01	DSTYK	ENST00000367162.3,ENST00000367160.4	chr1	205111632:205116873:205117332:205117467:205119807:205119898,	205117333	205117467	205117422	205117422	Frame_Shift_Del	A	-	p.F838fs
LIHC	TCGA-G3-A3CJ-01	DSTYK	ENST00000367162.3,ENST00000367161.3	chr1	205119807:205119922:205126400:205126514:205128674:205128807,	205126401	205126514	205126408	205126408	Frame_Shift_Del	T	-	p.N782fs
LIHC	TCGA-G3-A3CJ-01	DSTYK	ENST00000367162.3,ENST00000367161.3	chr1	205132050:205132134:205132850:205133083:205138290:205138960,	205132851	205133083	205132854	205132854	Frame_Shift_Del	T	-	p.K518fs
LIHC	TCGA-G3-A3CJ-01	LEMD1	ENST00000367153.4	chr1	205353415:205353492:205385359:205385424:205389582:205389702,205353415:205353492:205385359:205385424:205388357:205388480,	205385360	205385424	205385377	205385377	Frame_Shift_Del	T	-	p.S85fs
LIHC	TCGA-G3-A3CJ-01	LEMD1	ENST00000367154.1,ENST00000391936.2	chr1	205385359:205385424:205388357:205388480:205389582:205389702,205350512:205350984:205388357:205388480:205389582:205389702,	205388358	205388480	205388453	205388453	Frame_Shift_Del	T	-	p.K37fs
LIHC	TCGA-G3-A3CJ-01	NUCKS1	ENST00000367142.4	chr1	205693053:205693109:205696827:205696933:205698699:205698749,	205696828	205696933	205696877	205696877	Frame_Shift_Del	G	-	p.R42fs
LIHC	TCGA-G3-A3CJ-01	EIF2D	ENST00000367114.3,ENST00000271764.2	chr1	206781632:206781679:206782728:206782812:206784536:206784727,	206782729	206782812	206782734	206782734	Frame_Shift_Del	C	-	p.G109fs
LIHC	TCGA-G3-A3CJ-01	C4BPB	ENST00000492730.1	chr1	207262238:207262291:207262826:207262934:207263652:207263826,	207262827	207262934	207262880	207262880	Frame_Shift_Del	T	-	p.F3fs
LIHC	TCGA-G3-A3CJ-01	C4BPA	ENST00000367070.3	chr1	207314450:207314621:207317162:207317338:207317888:207318317,	207317163	207317338	207317324	207317324	Frame_Shift_Del	C	-	p.P536fs
LIHC	TCGA-G3-A3CJ-01	CD55	ENST00000482390.2,ENST00000391920.4,ENST00000465534.1,ENST00000343420.6,ENST00000367067.4,ENST00000367063.2,ENST00000476590.1,ENST00000391921.4,ENST00000367062.4,ENST00000314754.8,ENST00000488171.1,ENST00000367064.3,ENST00000367065.5	chr1	207500144:207500182:207504452:207504641:207510037:207510133,	207504453	207504641	207504477	207504477	Frame_Shift_Del	A	-	p.Q230fs
LIHC	TCGA-G3-A3CJ-01	CD55	ENST00000482390.2,ENST00000391920.4,ENST00000367067.4,ENST00000367063.2,ENST00000391921.4,ENST00000367062.4,ENST00000314754.8,ENST00000488171.1,ENST00000367064.3,ENST00000367065.5	chr1	207504452:207504641:207510037:207510163:207510673:207510754,	207510038	207510163	207510060	207510060	Frame_Shift_Del	C	-	p.V292fs
LIHC	TCGA-G3-A3CJ-01	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207782916	207782916	Frame_Shift_Del	A	-	p.T2060fs
LIHC	TCGA-G3-A3CJ-01	CR1	ENST00000367052.1,ENST00000367053.1,ENST00000400960.2,ENST00000367049.4,ENST00000367051.1	chr1	207780595:207780681:207782634:207783033:207785021:207785198,	207782635	207783033	207783004	207783004	Frame_Shift_Del	G	-	p.W2089fs
LIHC	TCGA-G3-A3CJ-01	PLXNA2	ENST00000367033.3	chr1	208315673:208315808:208383624:208383807:208390079:208390359,	208383625	208383807	208383655	208383655	Frame_Shift_Del	A	-	p.F447fs
LIHC	TCGA-G3-A3CJ-01	LAMB3	ENST00000415782.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209811878:209811993:209823308:209823463:209824261:209824321,	209823309	209823463	209823320	209823320	Frame_Shift_Del	G	-	p.Q58fs
LIHC	TCGA-G3-A3CJ-01	HSD11B1	ENST00000261465.1	chr1	209859549:209859630:209878261:209878375:209879155:209879286,	209878262	209878375	209878300	209878300	Frame_Shift_Del	A	-	p.K6fs
LIHC	TCGA-G3-A3CJ-01	TRAF3IP3	ENST00000476050.1,ENST00000367023.1,ENST00000477431.1,ENST00000474496.1	chr1	209936836:209936932:209946292:209946364:209948693:209948834,209941959:209942005:209946292:209946364:209948693:209948834,	209946293	209946364	209946339	209946339	Frame_Shift_Del	A	-	p.E250fs
LIHC	TCGA-G3-A3CJ-01	IRF6	ENST00000367021.3,ENST00000456314.1	chr1	209969692:209969897:209974584:209974761:209975316:209975388,	209974585	209974761	209974598	209974598	Frame_Shift_Del	T	-	p.N54fs
LIHC	TCGA-G3-A3CJ-01	KCNH1	ENST00000271751.4,ENST00000367007.4	chr1	210948689:210948886:210970849:210971102:210977308:210977508,	210970850	210971102	210970975	210970975	Frame_Shift_Del	A	-	p.F570fs
LIHC	TCGA-G3-A3CJ-01	KCNH1	ENST00000367007.4	chr1	210977308:210977508:211092981:211093411:211192205:211192598,	211092982	211093411	211092986	211092986	Frame_Shift_Del	A	-	p.I459fs
LIHC	TCGA-G3-A3CJ-01	RCOR3	ENST00000367006.4	chr1	211469017:211469095:211477424:211477482:211486061:211486146,211469017:211469095:211477424:211477482:211485696:211485829,211469023:211469095:211477424:211477482:211486765:211486816,	211477425	211477482	211477434	211477434	Frame_Shift_Del	A	-	p.K285fs
LIHC	TCGA-G3-A3CJ-01	NEK2	ENST00000366999.4,ENST00000489633.1,ENST00000540251.1	chr1	211836866:211836994:211840447:211840573:211842454:211842674,	211840448	211840573	211840569	211840569	Frame_Shift_Del	T	-	p.K330fs
LIHC	TCGA-G3-A3CJ-01	NEK2	ENST00000366999.4,ENST00000366998.3,ENST00000540251.1	chr1	211844543:211844626:211846824:211847065:211847637:211847855,	211846825	211847065	211847013	211847013	Frame_Shift_Del	C	-	p.A123fs
LIHC	TCGA-G3-A3CJ-01	INTS7	ENST00000366994.3,ENST00000469606.1,ENST00000440600.2	chr1	212118125:212118311:212119948:212120047:212125910:212126043,	212119949	212120047	212119977	212119977	Frame_Shift_Del	A	-	p.F796fs
LIHC	TCGA-G3-A3CJ-01	INTS7	ENST00000366992.3	chr1	212118125:212118311:212119948:212119987:212125910:212126043,	212119949	212119987	212119977	212119977	Frame_Shift_Del	A	-	p.F796fs
LIHC	TCGA-G3-A3CJ-01	INTS7	ENST00000366994.3,ENST00000366992.3,ENST00000366993.3	chr1	212190227:212190365:212193463:212193610:212194424:212194554,	212193464	212193610	212193510	212193510	Frame_Shift_Del	A	-	p.S109fs
LIHC	TCGA-G3-A3CJ-01	INTS7	ENST00000440600.2	chr1	212190227:212190365:212194424:212194554:212208685:212208862,	212194425	212194554	212194434	212194434	Frame_Shift_Del	A	-	p.F72fs
LIHC	TCGA-G3-A3CJ-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212220638:212220759:212236225:212236291:212238258:212238371,	212236226	212236291	212236285	212236285	Frame_Shift_Del	A	-	p.K175fs
LIHC	TCGA-G3-A3CJ-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212241940:212242045:212245442:212245555:212251514:212251604,	212245443	212245555	212245511	212245511	Frame_Shift_Del	T	-	p.F331fs
LIHC	TCGA-G3-A3CJ-01	DTL	ENST00000475419.1,ENST00000366991.4,ENST00000542077.1	chr1	212253956:212254092:212273593:212274426:212276183:212276604,	212273594	212274426	212274299	212274299	Frame_Shift_Del	C	-	p.S656fs
LIHC	TCGA-G3-A3CJ-01	ATF3	ENST00000465155.1,ENST00000341491.4	chr1	212782256:212782272:212788359:212788603:212791468:212791576,	212788360	212788603	212788594	212788594	Frame_Shift_Del	A	-	p.T77fs
LIHC	TCGA-G3-A3CJ-01	ANGEL2	ENST00000360506.2,ENST00000544555.1,ENST00000366962.3,ENST00000540642.1	chr1	213173667:213173725:213174127:213174254:213178374:213178423,	213174128	213174254	213174193	213174193	Frame_Shift_Del	G	-	p.P399fs
LIHC	TCGA-G3-A3CJ-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213414119	213414119	Frame_Shift_Del	A	-	p.K435fs
LIHC	TCGA-G3-A3CJ-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213414668	213414668	Frame_Shift_Del	T	-	p.F617fs
LIHC	TCGA-G3-A3CJ-01	SMYD2	ENST00000491455.1,ENST00000366957.5,ENST00000471645.1,ENST00000415093.2	chr1	214478534:214478593:214488104:214488215:214491421:214491482,	214488105	214488215	214488151	214488151	Frame_Shift_Del	T	-	p.V95fs
LIHC	TCGA-G3-A3CJ-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214556732	214556732	Frame_Shift_Del	T	-	p.K822fs
LIHC	TCGA-G3-A3CJ-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557206	214557206	Frame_Shift_Del	G	-	p.P664fs
LIHC	TCGA-G3-A3CJ-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214813306	214813306	Frame_Shift_Del	A	-	p.E542fs
LIHC	TCGA-G3-A3CJ-01	CENPF	ENST00000366955.3	chr1	214811208:214811344:214813263:214816667:214817899:214820743,	214813264	214816667	214814667	214814667	Frame_Shift_Del	A	-	p.K996fs
LIHC	TCGA-G3-A3CJ-01	KCTD3	ENST00000259154.4	chr1	215759837:215760028:215768697:215768813:215775208:215775296,	215768698	215768813	215768711	215768711	Frame_Shift_Del	G	-	p.L277fs
LIHC	TCGA-G3-A3CJ-01	ESRRG	ENST00000366938.2,ENST00000359162.2,ENST00000366940.2,ENST00000493748.1,ENST00000360012.3,ENST00000391890.3,ENST00000361395.2,ENST00000361525.3,ENST00000408911.3,ENST00000463665.1,ENST00000366937.1,ENST00000487276.1,ENST00000493603.1	chr1	216680129:216680525:216692493:216692763:216737560:216737722,	216692494	216692763	216692521	216692521	Frame_Shift_Del	G	-	p.L353fs
LIHC	TCGA-G3-A3CJ-01	IARS2	ENST00000302637.5	chr1	220267454:220267825:220269445:220269568:220273831:220273991,	220269446	220269568	220269487	220269487	Frame_Shift_Del	A	-	p.R31fs
LIHC	TCGA-G3-A3CJ-01	IARS2	ENST00000302637.5	chr1	220267454:220267825:220269445:220269568:220273831:220273991,	220269446	220269568	220269503	220269503	Frame_Shift_Del	T	-	p.F37fs
LIHC	TCGA-G3-A3CJ-01	IARS2	ENST00000490891.1,ENST00000366922.1,ENST00000302637.5	chr1	220298578:220298681:220300091:220300185:220307743:220307852,	220300092	220300185	220300135	220300135	Frame_Shift_Del	T	-	p.I524fs
LIHC	TCGA-G3-A3CJ-01	RAB3GAP2	ENST00000358951.2	chr1	220335539:220335610:220338074:220338141:220340634:220340741,	220338075	220338141	220338127	220338127	Frame_Shift_Del	A	-	p.F1034fs
LIHC	TCGA-G3-A3CJ-01	RAB3GAP2	ENST00000484658.1,ENST00000474178.1,ENST00000358951.2	chr1	220383729:220383831:220384142:220384218:220384296:220384344,	220384143	220384218	220384173	220384173	Frame_Shift_Del	A	-	p.F160fs
LIHC	TCGA-G3-A3CJ-01	TAF1A	ENST00000350027.4,ENST00000366890.1,ENST00000352967.4,ENST00000391882.1	chr1	222734705:222734860:222736514:222736638:222737400:222737467,	222736515	222736638	222736527	222736527	Frame_Shift_Del	T	-	p.N358fs
LIHC	TCGA-G3-A3CJ-01	MIA3	ENST00000344441.6,ENST00000344922.5,ENST00000340535.7	chr1	222827996:222828135:222832063:222832165:222832794:222832855,	222832064	222832165	222832154	222832154	Frame_Shift_Del	A	-	p.V1566fs
LIHC	TCGA-G3-A3CJ-01	AIDA	ENST00000497112.1,ENST00000474863.1,ENST00000470437.1,ENST00000340020.6,ENST00000541237.1,ENST00000355727.2	chr1	222860271:222860378:222860936:222861000:222867130:222867185,	222860937	222861000	222860972	222860972	Frame_Shift_Del	T	-	p.K106fs
LIHC	TCGA-G3-A3CJ-01	DISP1	ENST00000284476.6	chr1	223165354:223165452:223168226:223168324:223175726:223179337,	223168227	223168324	223168265	223168265	Frame_Shift_Del	G	-	p.G310fs
LIHC	TCGA-G3-A3CJ-01	CAPN8	ENST00000419193.2	chr1	223803671:223803847:223806994:223807155:223807893:223807968,	223806995	223807155	223807027	223807027	Frame_Shift_Del	C	-	p.G368fs
LIHC	TCGA-G3-A3CJ-01	WDR26	ENST00000295024.6,ENST00000414423.2,ENST00000480676.2	chr1	224586590:224586736:224588651:224588771:224592131:224592272,	224588652	224588771	224588688	224588688	Frame_Shift_Del	A	-	p.F461fs
LIHC	TCGA-G3-A3CJ-01	WDR26	ENST00000295024.6,ENST00000414423.2	chr1	224599128:224599267:224605961:224606118:224607219:224607317,	224605962	224606118	224606032	224606032	Frame_Shift_Del	G	-	p.L317fs
LIHC	TCGA-G3-A3CJ-01	DNAH14	ENST00000430092.1,ENST00000400952.3,ENST00000366849.1,ENST00000439375.2	chr1	225161792:225161855:225190484:225190629:225195114:225195246,	225190485	225190629	225190505	225190505	Frame_Shift_Del	T	-	p.L284fs
LIHC	TCGA-G3-A3CJ-01	DNAH14	ENST00000430092.1,ENST00000400952.3,ENST00000366849.1,ENST00000439375.2	chr1	225161792:225161855:225190484:225190629:225195114:225195246,	225190485	225190629	225190626	225190626	Frame_Shift_Del	A	-	p.V324fs
LIHC	TCGA-G3-A3CJ-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225231445:225231491:225231587:225231685:225237911:225238078,	225231588	225231685	225231674	225231674	Frame_Shift_Del	A	-	p.E634fs
LIHC	TCGA-G3-A3CJ-01	DNAH14	ENST00000495456.1,ENST00000328556.5	chr1	225305672:225305701:225306921:225306996:225311228:225311316,	225306922	225306996	225306969	225306969	Frame_Shift_Del	A	-	p.E1380fs
LIHC	TCGA-G3-A3CJ-01	LBR	ENST00000338179.2,ENST00000272163.4	chr1	225597992:225598118:225599038:225599142:225600155:225600347,	225599039	225599142	225599084	225599084	Frame_Shift_Del	A	-	p.F381fs
LIHC	TCGA-G3-A3CJ-01	ENAH	ENST00000366844.3,ENST00000358675.2	chr1	225688693:225688772:225692692:225692755:225695652:225695719,	225692693	225692755	225692735	225692735	Frame_Shift_Del	T	-	p.N520fs
LIHC	TCGA-G3-A3CJ-01	ENAH	ENST00000284563.6,ENST00000366843.2	chr1	225742607:225742785:225754950:225755116:225840387:225840418,	225754951	225755116	225755076	225755076	Frame_Shift_Del	A	-	p.Y16fs
LIHC	TCGA-G3-A3CJ-01	TMEM63A	ENST00000436966.1,ENST00000366835.3,ENST00000487817.1	chr1	226059686:226059753:226061987:226062067:226065094:226065194,	226061988	226062067	226062049	226062049	Frame_Shift_Del	A	-	p.S69fs
LIHC	TCGA-G3-A3CJ-01	LEFTY2	ENST00000420304.2,ENST00000366820.5	chr1	226124303:226125504:226127060:226127300:226127455:226127571,	226127061	226127300	226127291	226127291	Frame_Shift_Del	G	-	p.S169fs
LIHC	TCGA-G3-A3CJ-01	PARP1	ENST00000366794.5,ENST00000490921.1	chr1	226551643:226551771:226552702:226552855:226553654:226553753,	226552703	226552855	226552789	226552789	Frame_Shift_Del	T	-	p.R858fs
LIHC	TCGA-G3-A3CJ-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226923512	226923512	Frame_Shift_Del	G	-	p.Q550fs
LIHC	TCGA-G3-A3CJ-01	CDC42BPA	ENST00000442054.1,ENST00000366769.3,ENST00000535525.1,ENST00000366767.3,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227182523:227182681:227192694:227192812:227203780:227203830,	227192695	227192812	227192781	227192781	Frame_Shift_Del	A	-	p.F1595fs
LIHC	TCGA-G3-A3CJ-01	SNAP47	ENST00000366760.1	chr1	227923136:227923200:227946695:227947186:227954659:227954784,227916407:227916487:227946695:227947186:227954659:227954784,	227946696	227947186	227946711	227946711	Frame_Shift_Del	G	-	p.L216fs
LIHC	TCGA-G3-A3CJ-01	SNAP47	ENST00000366760.1	chr1	227923136:227923200:227946695:227947186:227954659:227954784,227916407:227916487:227946695:227947186:227954659:227954784,	227946696	227947186	227946831	227946831	Frame_Shift_Del	A	-	p.I256fs
LIHC	TCGA-G3-A3CJ-01	SNAP47	ENST00000366760.1	chr1	227923136:227923200:227946695:227947186:227954659:227954784,227916407:227916487:227946695:227947186:227954659:227954784,	227946696	227947186	227946992	227946992	Frame_Shift_Del	A	-	p.E310fs
LIHC	TCGA-G3-A3CJ-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228401141:228401411:228401874:228402135:228402490:228402799,	228401875	228402135	228402002	228402002	Frame_Shift_Del	G	-	p.A462fs
LIHC	TCGA-G3-A3CJ-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228433113:228433389:228434228:228434504:228437665:228437941,	228434229	228434504	228434467	228434467	Frame_Shift_Del	T	-	p.A1424fs
LIHC	TCGA-G3-A3CJ-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228486170:228486418:228486959:228487223:228487582:228487846,	228486960	228487223	228487166	228487166	Frame_Shift_Del	G	-	p.G4473fs
LIHC	TCGA-G3-A3CJ-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422305	229422305	Frame_Shift_Del	A	-	p.E35fs
LIHC	TCGA-G3-A3CJ-01	ACTA1	ENST00000366684.3	chr1	229567740:229567932:229568016:229568178:229568302:229568627,	229568017	229568178	229568162	229568162	Frame_Shift_Del	G	-	p.S157fs
LIHC	TCGA-G3-A3CJ-01	ACTA1	ENST00000366683.2	chr1	229568404:229568627:229568733:229568874:229569750:229569841,	229568734	229568874	229568750	229568750	Frame_Shift_Del	C	-	p.G38fs
LIHC	TCGA-G3-A3CJ-01	ACTA1	ENST00000366683.2	chr1	229568404:229568627:229568733:229568874:229569750:229569841,	229568734	229568874	229568777	229568777	Frame_Shift_Del	G	-	p.P29fs
LIHC	TCGA-G3-A3CJ-01	NUP133	ENST00000537506.1,ENST00000261396.3	chr1	229631638:229631794:229633882:229634053:229635430:229635565,	229633883	229634053	229633928	229633928	Frame_Shift_Del	T	-	p.K258fs
LIHC	TCGA-G3-A3CJ-01	CAPN9	ENST00000354537.1,ENST00000271971.2	chr1	230891082:230891152:230895257:230895376:230898398:230898532,	230895258	230895376	230895370	230895370	Frame_Shift_Del	T	-	p.H132fs
LIHC	TCGA-G3-A3CJ-01	GNPAT	ENST00000416000.1,ENST00000366647.4	chr1	231376961:231377202:231386706:231386889:231396252:231396399,	231386707	231386889	231386741	231386741	Frame_Shift_Del	T	-	p.I38fs
LIHC	TCGA-G3-A3CJ-01	SIPA1L2	ENST00000262861.4,ENST00000308942.4,ENST00000366630.1	chr1	232579347:232579431:232581274:232581532:232596632:232596907,	232581275	232581532	232581469	232581469	Frame_Shift_Del	G	-	p.P1053fs
LIHC	TCGA-G3-A3CJ-01	SIPA1L2	ENST00000262861.4,ENST00000366630.1	chr1	232607116:232607274:232615372:232615476:232619537:232619712,	232615373	232615476	232615388	232615388	Frame_Shift_Del	G	-	p.P690fs
LIHC	TCGA-G3-A3CJ-01	NTPCR	ENST00000366628.5,ENST00000490807.1,ENST00000366627.4	chr1	233086587:233086878:233091302:233091465:233092092:233092189,233086385:233086490:233091302:233091465:233092092:233092189,	233091303	233091465	233091350	233091350	Frame_Shift_Del	T	-	p.S29fs
LIHC	TCGA-G3-A3CJ-01	TARBP1	ENST00000040877.1,ENST00000463793.1	chr1	234546190:234546277:234553829:234553979:234556447:234556558,	234553830	234553979	234553860	234553860	Frame_Shift_Del	A	-	p.F1225fs
LIHC	TCGA-G3-A3CJ-01	TARBP1	ENST00000040877.1	chr1	234565832:234566047:234569155:234569317:234573020:234573118,	234569156	234569317	234569292	234569292	Frame_Shift_Del	A	-	p.L753fs
LIHC	TCGA-G3-A3CJ-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3,ENST00000491632.1,ENST00000444620.1	chr1	235344899:235346108:235357327:235357526:235359345:235359430,	235357328	235357526	235357477	235357477	Frame_Shift_Del	T	-	p.N659fs
LIHC	TCGA-G3-A3CJ-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000466653.1,ENST00000264183.3,ENST00000418304.1,ENST00000491632.1	chr1	235392545:235392700:235394427:235394504:235397727:235397807,	235394428	235394504	235394451	235394451	Frame_Shift_Del	T	-	p.K240fs
LIHC	TCGA-G3-A3CJ-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235887327:235887480:235891375:235891431:235892895:235892957,	235891376	235891431	235891381	235891381	Frame_Shift_Del	T	-	p.S3055fs
LIHC	TCGA-G3-A3CJ-01	LYST	ENST00000389794.3,ENST00000473037.1,ENST00000389793.2	chr1	235894331:235894477:235896802:235896991:235897129:235897206,	235896803	235896991	235896893	235896893	Frame_Shift_Del	T	-	p.K2904fs
LIHC	TCGA-G3-A3CJ-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000389793.2	chr1	235952000:235952145:235954998:235955425:235956802:235956912,	235954999	235955425	235955105	235955105	Frame_Shift_Del	A	-	p.F1479fs
LIHC	TCGA-G3-A3CJ-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000389793.2	chr1	235952000:235952145:235954998:235955425:235956802:235956912,	235954999	235955425	235955156	235955156	Frame_Shift_Del	C	-	p.G1462fs
LIHC	TCGA-G3-A3CJ-01	NID1	ENST00000264187.6	chr1	236180447:236180573:236187369:236187513:236189195:236189441,	236187370	236187513	236187431	236187431	Frame_Shift_Del	G	-	p.P689fs
LIHC	TCGA-G3-A3CJ-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236192849:236193050:236195700:236195952:236201403:236201553,	236195701	236195952	236195888	236195888	Frame_Shift_Del	G	-	p.P450fs
LIHC	TCGA-G3-A3CJ-01	NID1	ENST00000264187.6,ENST00000366595.3	chr1	236195700:236195952:236201403:236201553:236205209:236205592,	236201404	236201553	236201550	236201550	Frame_Shift_Del	A	-	p.F380fs
LIHC	TCGA-G3-A3CJ-01	GPR137B	ENST00000366592.3	chr1	236347081:236347206:236368425:236368550:236385090:236385165,236347081:236347206:236368425:236368550:236371349:236372206,	236368426	236368550	236368429	236368429	Frame_Shift_Del	A	-	p.N324fs
LIHC	TCGA-G3-A3CJ-01	EDARADD	ENST00000334232.4,ENST00000439430.1,ENST00000359362.5	chr1	236577559:236577599:236590691:236590750:236631530:236631576,	236590692	236590750	236590742	236590742	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-G3-A3CJ-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236724524:236724571:236727797:236727961:236729218:236729345,	236727798	236727961	236727858	236727858	Frame_Shift_Del	A	-	p.F1513fs
LIHC	TCGA-G3-A3CJ-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236729945:236730176:236732295:236732424:236734650:236734772,	236732296	236732424	236732316	236732316	Frame_Shift_Del	C	-	p.V1353fs
LIHC	TCGA-G3-A3CJ-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236729945:236730176:236732295:236732424:236734650:236734772,	236732296	236732424	236732392	236732392	Frame_Shift_Del	A	-	p.F1327fs
LIHC	TCGA-G3-A3CJ-01	HEATR1	ENST00000366581.2	chr1	236736024:236736128:236737501:236737633:236739518:236739677,	236737502	236737633	236737616	236737616	Frame_Shift_Del	A	-	p.F1115fs
LIHC	TCGA-G3-A3CJ-01	HEATR1	ENST00000366582.3	chr1	236737501:236737633:236737960:236738203:236739518:236739677,	236737961	236738203	236738184	236738184	Frame_Shift_Del	A	-	p.L1035fs
LIHC	TCGA-G3-A3CJ-01	MTR	ENST00000366577.5,ENST00000535889.1,ENST00000463959.1	chr1	237001713:237001899:237013643:237013823:237015820:237015937,	237013644	237013823	237013661	237013661	Frame_Shift_Del	A	-	p.T511fs
LIHC	TCGA-G3-A3CJ-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370660	240370660	Frame_Shift_Del	A	-	p.K850fs
LIHC	TCGA-G3-A3CJ-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371467	240371467	Frame_Shift_Del	C	-	p.P1123fs
LIHC	TCGA-G3-A3CJ-01	EXO1	ENST00000518483.1,ENST00000348581.5	chr1	242012284:242012329:242013710:242013888:242015593:242015713,	242013711	242013888	242013758	242013758	Frame_Shift_Del	A	-	p.K11fs
LIHC	TCGA-G3-A3CJ-01	EXO1	ENST00000423131.1	chr1	242015593:242015713:242016659:242016783:242020646:242020784,242013793:242013888:242016659:242016783:242020646:242020784,	242016660	242016783	242016709	242016709	Frame_Shift_Del	A	-	p.K111fs
LIHC	TCGA-G3-A3CJ-01	AKT3	ENST00000336199.5,ENST00000263826.5,ENST00000552631.1,ENST00000366539.1,ENST00000366540.1	chr1	243809206:243809339:243828073:243828185:243858892:243859018,	243828074	243828185	243828142	243828142	Frame_Shift_Del	A	-	p.F72fs
LIHC	TCGA-G3-A3CJ-01	EFCAB2	ENST00000495271.1,ENST00000447569.2,ENST00000366523.1	chr1	245165454:245165534:245180543:245180628:245222687:245222760,245133724:245133745:245180543:245180628:245222687:245222760,	245180544	245180628	245180567	245180567	Frame_Shift_Del	A	-	p.K154fs
LIHC	TCGA-G3-A3CJ-01	CNST	ENST00000366513.4	chr1	246729815:246729965:246754813:246755243:246784730:246784886,	246754814	246755243	246755045	246755045	Frame_Shift_Del	C	-	p.P61fs
LIHC	TCGA-G3-A3CJ-01	CNST	ENST00000366513.4	chr1	246729815:246729965:246754813:246755243:246784730:246784886,	246754814	246755243	246755194	246755194	Frame_Shift_Del	A	-	p.G110fs
LIHC	TCGA-G3-A3CJ-01	TPO	ENST00000497517.2	chr2	1488491:1488626:1497573:1497811:1520654:1520751,1488491:1488626:1497573:1497811:1507719:1507847,	1497574	1497811	1497619	1497619	Frame_Shift_Del	C	-	p.T605fs
LIHC	TCGA-G3-A3CJ-01	MYT1L	ENST00000428368.2	chr2	1915791:1915882:1920976:1921111:1926063:1927035,	1920977	1921111	1921030	1921030	Frame_Shift_Del	G	-	p.P522fs
LIHC	TCGA-G3-A3CJ-01	TRAPPC12	ENST00000473348.1,ENST00000437733.1,ENST00000382110.2,ENST00000461577.1,ENST00000497597.1,ENST00000324266.5	chr2	3476191:3476373:3481465:3481566:3482616:3482642,3469367:3469466:3481465:3481566:3482616:3482642,	3481466	3481566	3481488	3481488	Frame_Shift_Del	A	-	p.E600fs
LIHC	TCGA-G3-A3CJ-01	TRAPPC12	ENST00000415624.1	chr2	3469367:3469466:3481462:3481566:3482616:3482642,	3481463	3481566	3481488	3481488	Frame_Shift_Del	A	-	p.E600fs
LIHC	TCGA-G3-A3CJ-01	COLEC11	ENST00000438814.1,ENST00000403096.3,ENST00000416132.1,ENST00000418971.2,ENST00000349077.4	chr2	3651904:3652060:3685122:3685194:3687867:3687921,3653641:3653833:3685122:3685194:3687867:3687921,3660900:3660972:3685122:3685194:3687867:3687921,	3685123	3685194	3685169	3685169	Frame_Shift_Del	A	-	p.G57fs
LIHC	TCGA-G3-A3CJ-01	KIDINS220	ENST00000427284.1,ENST00000473731.1	chr2	8876997:8877129:8888016:8888130:8890241:8890465,	8888017	8888130	8888049	8888049	Frame_Shift_Del	T	-	p.T1166fs
LIHC	TCGA-G3-A3CJ-01	ITGB1BP1	ENST00000490426.1,ENST00000464228.1,ENST00000360635.3,ENST00000355346.4,ENST00000460720.1	chr2	9546942:9547034:9547577:9547727:9548241:9548334,	9547578	9547727	9547657	9547657	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-G3-A3CJ-01	TAF1B	ENST00000263663.5,ENST00000396242.3,ENST00000469895.1,ENST00000434858.1,ENST00000480197.1,ENST00000402170.1	chr2	9989501:9989589:9991669:9991767:9994454:9994550,	9991670	9991767	9991701	9991701	Frame_Shift_Del	T	-	p.G79fs
LIHC	TCGA-G3-A3CJ-01	HPCAL1	ENST00000307845.3	chr2	10536960:10537046:10559859:10560261:10563108:10563214,	10559860	10560261	10559933	10559933	Frame_Shift_Del	G	-	p.R17fs
LIHC	TCGA-G3-A3CJ-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1	chr2	10808783:10808849:10811679:10811816:10813645:10813683,	10811680	10811816	10811736	10811736	Frame_Shift_Del	A	-	p.F136fs
LIHC	TCGA-G3-A3CJ-01	GREB1	ENST00000432985.1,ENST00000381486.2,ENST00000234142.5	chr2	11740928:11741121:11742531:11742668:11750813:11750868,	11742532	11742668	11742612	11742612	Frame_Shift_Del	C	-	p.L870fs
LIHC	TCGA-G3-A3CJ-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11770122:11770235:11772034:11772239:11773014:11773189,	11772035	11772239	11772133	11772133	Frame_Shift_Del	T	-	p.H1570fs
LIHC	TCGA-G3-A3CJ-01	GREB1	ENST00000381486.2,ENST00000234142.5,ENST00000396123.1	chr2	11770122:11770235:11772034:11772239:11773014:11773189,	11772035	11772239	11772211	11772211	Frame_Shift_Del	C	-	p.L1596fs
LIHC	TCGA-G3-A3CJ-01	NBAS	ENST00000417461.1,ENST00000423602.1,ENST00000281513.5,ENST00000442506.1,ENST00000441750.1	chr2	15307040:15307447:15326865:15327004:15330387:15330521,15319111:15319240:15326865:15327004:15330387:15330521,	15326866	15327004	15326910	15326910	Frame_Shift_Del	T	-	p.M2223fs
LIHC	TCGA-G3-A3CJ-01	FAM49A	ENST00000451689.1,ENST00000381323.3,ENST00000445605.1	chr2	16746913:16747035:16769317:16769397:16805131:16805284,	16769318	16769397	16769347	16769347	Frame_Shift_Del	T	-	p.N14fs
LIHC	TCGA-G3-A3CJ-01	FAM49A	ENST00000451689.1,ENST00000381323.3,ENST00000445605.1	chr2	16746913:16747035:16769317:16769397:16805131:16805284,	16769318	16769397	16769383	16769383	Frame_Shift_Del	C	-	p.G2fs
LIHC	TCGA-G3-A3CJ-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17902206:17902305:17902408:17902528:17906523:17906625,	17902409	17902528	17902481	17902481	Frame_Shift_Del	A	-	p.F258fs
LIHC	TCGA-G3-A3CJ-01	SMC6	ENST00000351948.4	chr2	17922945:17922996:17927093:17927218:17934892:17935040,	17927094	17927218	17927130	17927130	Frame_Shift_Del	T	-	p.K28fs
LIHC	TCGA-G3-A3CJ-01	SMC6	ENST00000351948.4	chr2	17922945:17922996:17927093:17927218:17934892:17935040,	17927094	17927218	17927165	17927165	Frame_Shift_Del	T	-	p.R17fs
LIHC	TCGA-G3-A3CJ-01	GEN1	ENST00000317402.7,ENST00000381254.2	chr2	17947845:17947956:17950004:17950078:17952462:17952554,	17950005	17950078	17950037	17950037	Frame_Shift_Del	A	-	p.L223fs
LIHC	TCGA-G3-A3CJ-01	WDR35	ENST00000281405.4,ENST00000345530.3	chr2	20131029:20131170:20132043:20132208:20133161:20133272,	20132044	20132208	20132068	20132068	Frame_Shift_Del	A	-	p.F944fs
LIHC	TCGA-G3-A3CJ-01	WDR35	ENST00000414212.1	chr2	20131029:20131170:20132143:20132208:20133161:20133272,	20132144	20132208	20132180	20132180	Frame_Shift_Del	T	-	p.N907fs
LIHC	TCGA-G3-A3CJ-01	WDR35	ENST00000281405.4,ENST00000345530.3	chr2	20131029:20131170:20132043:20132208:20133161:20133272,	20132044	20132208	20132180	20132180	Frame_Shift_Del	T	-	p.N907fs
LIHC	TCGA-G3-A3CJ-01	MATN3	ENST00000407540.3	chr2	20201715:20201841:20202921:20203047:20205504:20206071,	20202922	20203047	20202929	20202929	Frame_Shift_Del	C	-	p.T303fs
LIHC	TCGA-G3-A3CJ-01	SDC1	ENST00000381150.1,ENST00000403076.1	chr2	20403912:20404052:20405103:20405185:20424562:20424847,	20405104	20405185	20405160	20405160	Frame_Shift_Del	G	-	p.P31fs
LIHC	TCGA-G3-A3CJ-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20453582:20453775:20454623:20454745:20454976:20455102,	20454624	20454745	20454673	20454673	Frame_Shift_Del	A	-	p.S943fs
LIHC	TCGA-G3-A3CJ-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511307	20511307	Frame_Shift_Del	T	-	p.I156fs
LIHC	TCGA-G3-A3CJ-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000442400.1,ENST00000319801.5,ENST00000420234.1	chr2	20512059:20512184:20518297:20518406:20527070:20527139,	20518298	20518406	20518306	20518306	Frame_Shift_Del	C	-	p.G51fs
LIHC	TCGA-G3-A3CJ-01	APOB	ENST00000233242.1	chr2	21227140:21227324:21227432:21227547:21227951:21235523,	21227433	21227547	21227544	21227544	Frame_Shift_Del	A	-	p.L3931fs
LIHC	TCGA-G3-A3CJ-01	APOB	ENST00000233242.1	chr2	21238241:21238417:21239310:21239521:21241863:21241985,	21239311	21239521	21239381	21239381	Frame_Shift_Del	T	-	p.T1088fs
LIHC	TCGA-G3-A3CJ-01	KLHL29	ENST00000486442.1,ENST00000471654.1	chr2	23919202:23919383:23926055:23926249:23926588:23926733,	23926056	23926249	23926135	23926135	Frame_Shift_Del	G	-	p.G730fs
LIHC	TCGA-G3-A3CJ-01	ATAD2B	ENST00000238789.5,ENST00000474583.1	chr2	24033185:24033372:24042616:24042752:24046127:24046439,	24042617	24042752	24042637	24042637	Frame_Shift_Del	T	-	p.K749fs
LIHC	TCGA-G3-A3CJ-01	FAM228B	ENST00000407625.1,ENST00000420135.2	chr2	24357988:24358057:24360778:24360970:24362239:24362320,	24360779	24360970	24360891	24360891	Frame_Shift_Del	A	-	p.E94fs
LIHC	TCGA-G3-A3CJ-01	NCOA1	ENST00000538539.1,ENST00000288599.5,ENST00000395856.3,ENST00000406961.1,ENST00000348332.3,ENST00000405141.1	chr2	24888617:24888784:24896234:24896332:24905819:24905997,	24896235	24896332	24896301	24896301	Frame_Shift_Del	A	-	p.E108fs
LIHC	TCGA-G3-A3CJ-01	ADCY3	ENST00000606682.1,ENST00000260600.5,ENST00000405392.1	chr2	25042237:25042983:25043592:25043717:25044385:25044509,	25043593	25043717	25043651	25043651	Frame_Shift_Del	C	-	p.G1065fs
LIHC	TCGA-G3-A3CJ-01	DNMT3A	ENST00000482935.1,ENST00000402667.1,ENST00000321117.5,ENST00000466601.1,ENST00000264709.3,ENST00000380746.4	chr2	25459842:25459874:25461998:25462084:25463170:25463319,	25461999	25462084	25462058	25462058	Frame_Shift_Del	T	-	p.K783fs
LIHC	TCGA-G3-A3CJ-01	DNMT3A	ENST00000402667.1,ENST00000321117.5,ENST00000474887.1,ENST00000491288.1,ENST00000380756.3,ENST00000264709.3,ENST00000380746.4	chr2	25463508:25463599:25464430:25464576:25466766:25466839,	25464431	25464576	25464571	25464571	Frame_Shift_Del	G	-	p.L648fs
LIHC	TCGA-G3-A3CJ-01	DNMT3A	ENST00000461228.1	chr2	25463508:25463599:25464430:25464646:25466766:25466839,	25464431	25464646	25464571	25464571	Frame_Shift_Del	G	-	p.L648fs
LIHC	TCGA-G3-A3CJ-01	DTNB	ENST00000398951.2	chr2	25818992:25819109:25830104:25830190:25851039:25851253,25803589:25803695:25830104:25830190:25851039:25851253,	25830105	25830190	25830117	25830117	Frame_Shift_Del	C	-	p.D146fs
LIHC	TCGA-G3-A3CJ-01	DRC1	ENST00000288710.2	chr2	26667089:26667224:26667583:26667816:26671558:26671671,	26667584	26667816	26667612	26667612	Frame_Shift_Del	T	-	p.F398fs
LIHC	TCGA-G3-A3CJ-01	DPYSL5	ENST00000401478.1,ENST00000288699.6	chr2	27147754:27147913:27150120:27150300:27151122:27151191,	27150121	27150300	27150156	27150156	Frame_Shift_Del	G	-	p.K152fs
LIHC	TCGA-G3-A3CJ-01	MAPRE3	ENST00000458529.1,ENST00000233121.2	chr2	27246199:27246345:27246963:27247165:27248450:27248605,	27246964	27247165	27247015	27247015	Frame_Shift_Del	T	-	p.F107fs
LIHC	TCGA-G3-A3CJ-01	MAPRE3	ENST00000405074.3,ENST00000402218.1	chr2	27246199:27246345:27246963:27247120:27248450:27248605,	27246964	27247120	27247015	27247015	Frame_Shift_Del	T	-	p.F107fs
LIHC	TCGA-G3-A3CJ-01	TMEM214	ENST00000404032.3,ENST00000321326.7,ENST00000238788.9	chr2	27256005:27256034:27256934:27257134:27258002:27258153,	27256935	27257134	27257105	27257105	Frame_Shift_Del	T	-	p.F108fs
LIHC	TCGA-G3-A3CJ-01	TMEM214	ENST00000435172.1,ENST00000321326.7,ENST00000238788.9	chr2	27258137:27258153:27258461:27258596:27258837:27258920,	27258462	27258596	27258545	27258545	Frame_Shift_Del	T	-	p.F197fs
LIHC	TCGA-G3-A3CJ-01	TMEM214	ENST00000460665.1,ENST00000434544.1,ENST00000404032.3,ENST00000321326.7,ENST00000238788.9	chr2	27262897:27263066:27263212:27263364:27263578:27263822,	27263213	27263364	27263270	27263270	Frame_Shift_Del	C	-	p.P617fs
LIHC	TCGA-G3-A3CJ-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306152	27306152	Frame_Shift_Del	G	-	p.E571fs
LIHC	TCGA-G3-A3CJ-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306166	27306166	Frame_Shift_Del	C	-	p.A576fs
LIHC	TCGA-G3-A3CJ-01	EMILIN1	ENST00000433140.1,ENST00000380320.4	chr2	27307858:27307876:27308027:27308165:27308545:27309271,	27308028	27308165	27308035	27308035	Frame_Shift_Del	G	-	p.E861fs
LIHC	TCGA-G3-A3CJ-01	EMILIN1	ENST00000433140.1,ENST00000380320.4	chr2	27307858:27307876:27308027:27308165:27308545:27309271,	27308028	27308165	27308090	27308090	Frame_Shift_Del	C	-	p.P880fs
LIHC	TCGA-G3-A3CJ-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000430533.1,ENST00000468045.1	chr2	27354877:27354950:27355097:27355271:27355470:27355488,	27355098	27355271	27355191	27355191	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-G3-A3CJ-01	PREB	ENST00000474802.1	chr2	27355710:27355791:27355984:27356589:27357154:27357229,	27355985	27356589	27356137	27356137	Frame_Shift_Del	T	-	p.T132fs
LIHC	TCGA-G3-A3CJ-01	PREB	ENST00000260643.2,ENST00000444452.1,ENST00000406567.3	chr2	27355710:27355791:27355984:27356205:27356399:27356522,	27355985	27356205	27356137	27356137	Frame_Shift_Del	T	-	p.T132fs
LIHC	TCGA-G3-A3CJ-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27558494:27558573:27558783:27558895:27559064:27559292,	27558784	27558895	27558807	27558807	Frame_Shift_Del	C	-	p.E482fs
LIHC	TCGA-G3-A3CJ-01	GTF3C2	ENST00000470115.1	chr2	27558494:27558573:27558783:27559292:27560110:27560175,	27558784	27559292	27558807	27558807	Frame_Shift_Del	C	-	p.E482fs
LIHC	TCGA-G3-A3CJ-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27558494:27558573:27558783:27558895:27559064:27559292,	27558784	27558895	27558874	27558874	Frame_Shift_Del	A	-	p.F459fs
LIHC	TCGA-G3-A3CJ-01	GTF3C2	ENST00000470115.1	chr2	27558494:27558573:27558783:27559292:27560110:27560175,	27558784	27559292	27558874	27558874	Frame_Shift_Del	A	-	p.F459fs
LIHC	TCGA-G3-A3CJ-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27558802:27558895:27559064:27559292:27560110:27560175,	27559065	27559292	27559236	27559236	Frame_Shift_Del	C	-	p.G395fs
LIHC	TCGA-G3-A3CJ-01	GTF3C2	ENST00000470115.1	chr2	27558494:27558573:27558783:27559292:27560110:27560175,	27558784	27559292	27559236	27559236	Frame_Shift_Del	C	-	p.G395fs
LIHC	TCGA-G3-A3CJ-01	EIF2B4	ENST00000347454.4,ENST00000451130.2,ENST00000405940.2,ENST00000445933.2,ENST00000493344.2	chr2	27589940:27590068:27590323:27590426:27590612:27590689,	27590324	27590426	27590346	27590346	Frame_Shift_Del	C	-	p.G309fs
LIHC	TCGA-G3-A3CJ-01	EIF2B4	ENST00000347454.4,ENST00000451130.2,ENST00000405940.2,ENST00000445933.2,ENST00000493344.2	chr2	27589940:27590068:27590323:27590426:27590612:27590689,	27590324	27590426	27590359	27590359	Frame_Shift_Del	T	-	p.I305fs
LIHC	TCGA-G3-A3CJ-01	EIF2B4	ENST00000347454.4,ENST00000451130.2,ENST00000417567.1,ENST00000445933.2,ENST00000493344.2	chr2	27590612:27590689:27590891:27591006:27591238:27591330,	27590892	27591006	27590983	27590983	Frame_Shift_Del	G	-	p.P226fs
LIHC	TCGA-G3-A3CJ-01	SNX17	ENST00000537606.1,ENST00000233575.2,ENST00000440760.1,ENST00000453453.1,ENST00000543024.1,ENST00000542478.1,ENST00000427123.1	chr2	27598972:27599050:27599179:27599254:27599345:27599387,	27599180	27599254	27599197	27599197	Frame_Shift_Del	G	-	p.V400fs
LIHC	TCGA-G3-A3CJ-01	PPM1G	ENST00000350803.4	chr2	27609060:27609146:27609955:27610025:27632169:27632377,	27609956	27610025	27609977	27609977	Frame_Shift_Del	A	-	p.S57fs
LIHC	TCGA-G3-A3CJ-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658018	27658018	Frame_Shift_Del	C	-	p.D195fs
LIHC	TCGA-G3-A3CJ-01	IFT172	ENST00000494163.1,ENST00000507184.1,ENST00000260570.3,ENST00000509128.1	chr2	27668310:27668316:27668611:27668710:27668795:27668851,	27668612	27668710	27668696	27668696	Frame_Shift_Del	C	-	p.G1610fs
LIHC	TCGA-G3-A3CJ-01	ZNF512	ENST00000379717.1,ENST00000416005.2,ENST00000355467.4,ENST00000413371.2	chr2	27823557:27823682:27824222:27824309:27825329:27825428,	27824223	27824309	27824247	27824247	Frame_Shift_Del	G	-	p.G203fs
LIHC	TCGA-G3-A3CJ-01	SLC4A1AP	ENST00000326019.6	chr2	27900604:27900791:27905114:27905226:27907903:27908144,	27905115	27905226	27905203	27905203	Frame_Shift_Del	A	-	p.K618fs
LIHC	TCGA-G3-A3CJ-01	SLC4A1AP	ENST00000326019.6	chr2	27900604:27900791:27905114:27905226:27907903:27908144,	27905115	27905226	27905208	27905208	Frame_Shift_Del	A	-	p.L619fs
LIHC	TCGA-G3-A3CJ-01	PLB1	ENST00000444257.1,ENST00000327757.5,ENST00000411743.1,ENST00000404858.1,ENST00000541605.1,ENST00000422425.2	chr2	28843131:28843199:28843466:28843510:28843745:28843845,	28843467	28843510	28843507	28843507	Frame_Shift_Del	C	-	p.P1131fs
LIHC	TCGA-G3-A3CJ-01	SPDYA	ENST00000379579.4	chr2	29033716:29033813:29038862:29039115:29041913:29041972,	29038863	29039115	29039020	29039020	Frame_Shift_Del	A	-	p.E47fs
LIHC	TCGA-G3-A3CJ-01	SPDYA	ENST00000334056.5,ENST00000379579.4	chr2	29052015:29052185:29063037:29063335:29072715:29073300,	29063038	29063335	29063182	29063182	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-G3-A3CJ-01	TRMT61B	ENST00000439947.1	chr2	29073193:29073271:29075273:29075365:29083983:29084174,	29075274	29075365	29075320	29075320	Frame_Shift_Del	A	-	p.Y347fs
LIHC	TCGA-G3-A3CJ-01	WDR43	ENST00000407426.3,ENST00000296126.6,ENST00000440983.1	chr2	29129325:29129447:29135455:29135576:29136934:29137036,	29135456	29135576	29135551	29135551	Frame_Shift_Del	T	-	p.V194fs
LIHC	TCGA-G3-A3CJ-01	WDR43	ENST00000407426.3,ENST00000296126.6	chr2	29145784:29145849:29147847:29148019:29149333:29149351,	29147848	29148019	29147855	29147855	Frame_Shift_Del	A	-	p.K309fs
LIHC	TCGA-G3-A3CJ-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379303	29379303	Frame_Shift_Del	A	-	p.K417fs
LIHC	TCGA-G3-A3CJ-01	ALK	ENST00000389048.3	chr2	29436849:29436947:29443571:29443701:29445209:29445274,	29443572	29443701	29443664	29443664	Frame_Shift_Del	C	-	p.V1185fs
LIHC	TCGA-G3-A3CJ-01	CAPN13	ENST00000534090.2,ENST00000465960.2,ENST00000458085.2,ENST00000295055.8	chr2	30993178:30993315:30998795:30998911:31000432:31000505,	30998796	30998911	30998828	30998828	Frame_Shift_Del	A	-	p.S119fs
LIHC	TCGA-G3-A3CJ-01	XDH	ENST00000379416.3	chr2	31571764:31571846:31572551:31572697:31572897:31573089,	31572552	31572697	31572613	31572613	Frame_Shift_Del	C	-	p.E971fs
LIHC	TCGA-G3-A3CJ-01	SPAST	ENST00000315285.3	chr2	32314590:32314674:32339706:32339894:32340770:32340904,32323864:32323960:32339706:32339894:32340770:32340904,	32339707	32339894	32339712	32339712	Frame_Shift_Del	G	-	p.G230fs
LIHC	TCGA-G3-A3CJ-01	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32341187:32341281:32352016:32352091:32353476:32353548,	32352017	32352091	32352071	32352071	Frame_Shift_Del	G	-	p.G385fs
LIHC	TCGA-G3-A3CJ-01	SPAST	ENST00000315285.3,ENST00000345662.1	chr2	32366972:32367015:32368404:32368484:32370005:32370076,	32368405	32368484	32368460	32368460	Frame_Shift_Del	A	-	p.Q531fs
LIHC	TCGA-G3-A3CJ-01	SLC30A6	ENST00000282587.5,ENST00000357055.3,ENST00000449777.1,ENST00000454324.1,ENST00000406369.1,ENST00000379343.2,ENST00000538303.1	chr2	32431954:32432002:32434561:32434630:32445281:32446216,	32434562	32434630	32434581	32434581	Frame_Shift_Del	T	-	p.V279fs
LIHC	TCGA-G3-A3CJ-01	SLC30A6	ENST00000282587.5,ENST00000357055.3,ENST00000449777.1,ENST00000454324.1,ENST00000406369.1,ENST00000379343.2,ENST00000538303.1	chr2	32431954:32432002:32434561:32434630:32445281:32446216,	32434562	32434630	32434603	32434603	Frame_Shift_Del	T	-	p.H286fs
LIHC	TCGA-G3-A3CJ-01	BIRC6	ENST00000421745.2	chr2	32664575:32664754:32666396:32666530:32667132:32667294,	32666397	32666530	32666449	32666449	Frame_Shift_Del	A	-	p.E1288fs
LIHC	TCGA-G3-A3CJ-01	BIRC6	ENST00000421745.2	chr2	32688261:32688449:32689576:32689891:32690132:32690232,	32689577	32689891	32689729	32689729	Frame_Shift_Del	A	-	p.P1698fs
LIHC	TCGA-G3-A3CJ-01	BIRC6	ENST00000421745.2	chr2	32689576:32689891:32690132:32690232:32692592:32692807,	32690133	32690232	32690180	32690180	Frame_Shift_Del	T	-	p.H1768fs
LIHC	TCGA-G3-A3CJ-01	BIRC6	ENST00000421745.2	chr2	32690132:32690232:32692592:32692807:32692970:32693179,	32692593	32692807	32692678	32692678	Frame_Shift_Del	T	-	p.S1814fs
LIHC	TCGA-G3-A3CJ-01	BIRC6	ENST00000421745.2	chr2	32743883:32744013:32749954:32750086:32750530:32750695,	32749955	32750086	32750011	32750011	Frame_Shift_Del	A	-	p.K3894fs
LIHC	TCGA-G3-A3CJ-01	BIRC6	ENST00000421745.2	chr2	32743883:32744013:32749954:32750086:32750530:32750695,	32749955	32750086	32750045	32750045	Frame_Shift_Del	A	-	p.E3905fs
LIHC	TCGA-G3-A3CJ-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859010	32859010	Frame_Shift_Del	C	-	p.P113fs
LIHC	TCGA-G3-A3CJ-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859037	32859037	Frame_Shift_Del	T	-	p.F121fs
LIHC	TCGA-G3-A3CJ-01	TTC27	ENST00000428527.1,ENST00000317907.4	chr2	33012050:33012216:33036090:33036288:33037570:33037682,	33036091	33036288	33036210	33036210	Frame_Shift_Del	A	-	p.T706fs
LIHC	TCGA-G3-A3CJ-01	LTBP1	ENST00000404816.2,ENST00000354476.3	chr2	33335648:33335818:33359859:33360027:33411922:33412147,	33359860	33360027	33359954	33359954	Frame_Shift_Del	G	-	p.K376fs
LIHC	TCGA-G3-A3CJ-01	LTBP1	ENST00000407925.1,ENST00000404525.1,ENST00000390003.4,ENST00000404816.2,ENST00000354476.3,ENST00000402934.1,ENST00000418533.2	chr2	33447146:33447218:33468728:33468851:33477743:33477911,	33468729	33468851	33468809	33468809	Frame_Shift_Del	A	-	p.K653fs
LIHC	TCGA-G3-A3CJ-01	LTBP1	ENST00000415140.2	chr2	33500975:33500990:33505105:33505225:33518226:33518349,33500975:33500990:33505105:33505225:33525517:33525640,	33505106	33505225	33505119	33505119	Frame_Shift_Del	T	-	p.C1002fs
LIHC	TCGA-G3-A3CJ-01	RASGRP3	ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33783277:33783403:33783738:33784097:33787795:33789672,	33783739	33784097	33783932	33783932	Frame_Shift_Del	C	-	p.F633fs
LIHC	TCGA-G3-A3CJ-01	RASGRP3	ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33783277:33783403:33783738:33784097:33787795:33789672,	33783739	33784097	33783971	33783971	Frame_Shift_Del	G	-	p.K646fs
LIHC	TCGA-G3-A3CJ-01	FAM98A	ENST00000441530.2,ENST00000238823.8,ENST00000403368.1,ENST00000492649.1	chr2	33810596:33810764:33811628:33811745:33812306:33812381,	33811629	33811745	33811677	33811677	Frame_Shift_Del	T	-	p.K224fs
LIHC	TCGA-G3-A3CJ-01	CRIM1	ENST00000280527.2	chr2	36771518:36771641:36774126:36774314:36775667:36778278,	36774127	36774314	36774170	36774170	Frame_Shift_Del	C	-	p.H930fs
LIHC	TCGA-G3-A3CJ-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37208152:37208937:37215788:37216002:37217790:37217939,	37215789	37216002	37215872	37215872	Frame_Shift_Del	G	-	p.P1943fs
LIHC	TCGA-G3-A3CJ-01	HEATR5B	ENST00000233099.5	chr2	37227728:37227956:37229448:37229715:37230684:37230822,	37229449	37229715	37229696	37229696	Frame_Shift_Del	T	-	p.K1690fs
LIHC	TCGA-G3-A3CJ-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37232774:37232902:37234192:37234447:37235753:37235991,	37234193	37234447	37234354	37234354	Frame_Shift_Del	A	-	p.L1539fs
LIHC	TCGA-G3-A3CJ-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37304053:37304162:37306262:37306474:37310431:37310579,	37306263	37306474	37306265	37306265	Frame_Shift_Del	T	-	p.K112fs
LIHC	TCGA-G3-A3CJ-01	NDUFAF7	ENST00000455230.1	chr2	37468720:37468934:37469777:37469836:37471005:37471116,37468720:37468780:37469777:37469836:37471005:37471116,	37469778	37469836	37469804	37469804	Frame_Shift_Del	T	-	p.F218fs
LIHC	TCGA-G3-A3CJ-01	QPCT	ENST00000537448.1,ENST00000404976.1,ENST00000338415.3,ENST00000480050.1	chr2	37586722:37587001:37594374:37594551:37596827:37596845,	37594375	37594551	37594420	37594420	Frame_Shift_Del	T	-	p.F198fs
LIHC	TCGA-G3-A3CJ-01	ATL2	ENST00000539122.1,ENST00000378954.4,ENST00000402054.1,ENST00000405384.2,ENST00000452935.2	chr2	38523049:38523255:38525285:38525717:38526397:38526469,	38525286	38525717	38525617	38525617	Frame_Shift_Del	T	-	p.K434fs
LIHC	TCGA-G3-A3CJ-01	HNRNPLL	ENST00000378915.3	chr2	38809054:38809127:38810987:38811068:38812785:38812889,	38810988	38811068	38811033	38811033	Frame_Shift_Del	T	-	p.K194fs
LIHC	TCGA-G3-A3CJ-01	DHX57	ENST00000460193.1,ENST00000295373.6,ENST00000457308.1,ENST00000452978.1	chr2	39055481:39055578:39064972:39065089:39070146:39070352,	39064973	39065089	39065046	39065046	Frame_Shift_Del	A	-	p.F823fs
LIHC	TCGA-G3-A3CJ-01	DHX57	ENST00000460193.1,ENST00000295373.6,ENST00000457308.1	chr2	39074160:39074215:39075410:39075544:39081195:39081320,	39075411	39075544	39075450	39075450	Frame_Shift_Del	A	-	p.S709fs
LIHC	TCGA-G3-A3CJ-01	SOS1	ENST00000395038.2,ENST00000426016.1,ENST00000402219.2	chr2	39241007:39241130:39241905:39241987:39249710:39250366,	39241906	39241987	39241943	39241943	Frame_Shift_Del	A	-	p.C635fs
LIHC	TCGA-G3-A3CJ-01	SOS1	ENST00000428721.2,ENST00000395038.2,ENST00000451331.1,ENST00000426016.1,ENST00000402219.2	chr2	39283873:39284007:39285813:39285945:39294768:39294894,	39285814	39285945	39285831	39285831	Frame_Shift_Del	T	-	p.I110fs
LIHC	TCGA-G3-A3CJ-01	THUMPD2	ENST00000510781.2,ENST00000454352.2	chr2	39995563:39995641:39996040:39996233:39996849:39997259,	39996041	39996233	39996149	39996149	Frame_Shift_Del	T	-	p.T223fs
LIHC	TCGA-G3-A3CJ-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000505747.1	chr2	39996040:39996233:39996849:39997259:39998644:39998780,39995563:39995641:39996849:39997259:39998644:39998780,	39996850	39997259	39997150	39997150	Frame_Shift_Del	T	-	p.K124fs
LIHC	TCGA-G3-A3CJ-01	THUMPD2	ENST00000530522.1	chr2	39995563:39995641:39996897:39997259:39998654:39998780,	39996898	39997259	39997150	39997150	Frame_Shift_Del	T	-	p.K124fs
LIHC	TCGA-G3-A3CJ-01	EML4	ENST00000402711.2,ENST00000401738.3,ENST00000318522.5	chr2	42507989:42508113:42509962:42510112:42511773:42511843,	42509963	42510112	42510018	42510018	Frame_Shift_Del	A	-	p.K283fs
LIHC	TCGA-G3-A3CJ-01	MTA3	ENST00000405592.1,ENST00000407270.3,ENST00000406911.1,ENST00000406652.1,ENST00000405094.1,ENST00000454356.1,ENST00000409019.1	chr2	42797576:42797644:42836597:42836724:42867312:42867376,42806246:42806340:42836597:42836724:42867312:42867376,	42836598	42836724	42836708	42836708	Frame_Shift_Del	C	-	p.P45fs
LIHC	TCGA-G3-A3CJ-01	THADA	ENST00000402796.1,ENST00000330266.7,ENST00000407351.1,ENST00000398653.1,ENST00000405006.4,ENST00000405975.2,ENST00000408045.3,ENST00000436947.1,ENST00000415080.2	chr2	43725971:43726094:43732760:43732874:43735786:43735892,	43732761	43732874	43732801	43732801	Frame_Shift_Del	A	-	p.L1194fs
LIHC	TCGA-G3-A3CJ-01	THADA	ENST00000402796.1,ENST00000330266.7,ENST00000407351.1,ENST00000398653.1,ENST00000405006.4,ENST00000405975.2,ENST00000408045.3,ENST00000436947.1,ENST00000415080.2	chr2	43725971:43726094:43732760:43732874:43735786:43735892,	43732761	43732874	43732826	43732826	Frame_Shift_Del	T	-	p.I1186fs
LIHC	TCGA-G3-A3CJ-01	THADA	ENST00000330266.7,ENST00000407351.1,ENST00000404790.1,ENST00000402360.2,ENST00000398653.1,ENST00000405006.4,ENST00000405975.2,ENST00000408045.3,ENST00000415080.2	chr2	43779342:43779478:43787372:43787524:43793836:43793960,43783487:43783694:43787372:43787524:43793836:43793960,	43787373	43787524	43787422	43787422	Frame_Shift_Del	A	-	p.L805fs
LIHC	TCGA-G3-A3CJ-01	DYNC2LI1	ENST00000406852.3,ENST00000479242.1,ENST00000443170.3,ENST00000605786.1,ENST00000398823.2	chr2	44001224:44001285:44003920:44004038:44010658:44010693,	44003921	44004038	44003956	44003956	Frame_Shift_Del	A	-	p.E15fs
LIHC	TCGA-G3-A3CJ-01	ABCG5	ENST00000260645.1	chr2	44051357:44051571:44052027:44052157:44053520:44053660,	44052028	44052157	44052114	44052114	Frame_Shift_Del	A	-	p.F273fs
LIHC	TCGA-G3-A3CJ-01	LRPPRC	ENST00000463456.1,ENST00000260665.7,ENST00000419884.1	chr2	44121683:44121768:44123772:44123847:44126357:44126423,	44123773	44123847	44123782	44123782	Frame_Shift_Del	T	-	p.K1297fs
LIHC	TCGA-G3-A3CJ-01	LRPPRC	ENST00000260665.7	chr2	44132830:44132919:44139570:44139697:44145163:44145272,	44139571	44139697	44139682	44139682	Frame_Shift_Del	A	-	p.F1055fs
LIHC	TCGA-G3-A3CJ-01	LRPPRC	ENST00000409659.1,ENST00000409946.1	chr2	44206964:44207087:44209376:44209573:44222937:44223117,	44209377	44209573	44209396	44209396	Frame_Shift_Del	A	-	p.F109fs
LIHC	TCGA-G3-A3CJ-01	LRPPRC	ENST00000409659.1,ENST00000409946.1	chr2	44206964:44207087:44209376:44209573:44222937:44223117,	44209377	44209573	44209402	44209402	Frame_Shift_Del	T	-	p.K107fs
LIHC	TCGA-G3-A3CJ-01	LRPPRC	ENST00000409659.1,ENST00000409946.1	chr2	44206964:44207087:44209376:44209573:44222937:44223117,	44209377	44209573	44209525	44209525	Frame_Shift_Del	T	-	p.K66fs
LIHC	TCGA-G3-A3CJ-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428542	44428542	Frame_Shift_Del	A	-	p.A68fs
LIHC	TCGA-G3-A3CJ-01	PPM1B	ENST00000409432.3,ENST00000409473.2,ENST00000378551.2,ENST00000282412.4,ENST00000345249.4,ENST00000419807.1,ENST00000378540.4	chr2	44436402:44436466:44445105:44445217:44445618:44445676,	44445106	44445217	44445175	44445175	Frame_Shift_Del	A	-	p.E345fs
LIHC	TCGA-G3-A3CJ-01	SLC3A1	ENST00000409387.1,ENST00000409741.1,ENST00000260649.6,ENST00000427285.1,ENST00000409229.3,ENST00000410056.3,ENST00000409380.1	chr2	44513170:44513296:44527109:44527229:44528141:44528225,	44527110	44527229	44527114	44527114	Frame_Shift_Del	T	-	p.I299fs
LIHC	TCGA-G3-A3CJ-01	PREPL	ENST00000409936.1	chr2	44573437:44573529:44586635:44587177:44588518:44588632,	44586636	44587177	44586651	44586651	Frame_Shift_Del	C	-	p.R68fs
LIHC	TCGA-G3-A3CJ-01	PREPL	ENST00000410081.1	chr2	44573437:44573529:44586635:44586889:44588662:44588944,44573437:44573529:44586635:44586889:44588518:44588632,	44586636	44586889	44586651	44586651	Frame_Shift_Del	C	-	p.R68fs
LIHC	TCGA-G3-A3CJ-01	PREPL	ENST00000409936.1	chr2	44573437:44573529:44586635:44587177:44588518:44588632,	44586636	44587177	44586720	44586720	Frame_Shift_Del	T	-	p.K45fs
LIHC	TCGA-G3-A3CJ-01	PREPL	ENST00000410081.1	chr2	44573437:44573529:44586635:44586889:44588662:44588944,44573437:44573529:44586635:44586889:44588518:44588632,	44586636	44586889	44586720	44586720	Frame_Shift_Del	T	-	p.K45fs
LIHC	TCGA-G3-A3CJ-01	PREPL	ENST00000409936.1	chr2	44573437:44573529:44586635:44587177:44588518:44588632,	44586636	44587177	44586820	44586820	Frame_Shift_Del	A	-	p.L12fs
LIHC	TCGA-G3-A3CJ-01	PREPL	ENST00000410081.1	chr2	44573437:44573529:44586635:44586889:44588662:44588944,44573437:44573529:44586635:44586889:44588518:44588632,	44586636	44586889	44586820	44586820	Frame_Shift_Del	A	-	p.L12fs
LIHC	TCGA-G3-A3CJ-01	CAMKMT	ENST00000378494.3,ENST00000477830.1	chr2	44931421:44931482:44933425:44933480:44934537:44934601,	44933426	44933480	44933428	44933428	Frame_Shift_Del	C	-	p.A147fs
LIHC	TCGA-G3-A3CJ-01	CAMKMT	ENST00000378494.3	chr2	44942425:44942492:44970760:44970835:44981193:44981257,	44970761	44970835	44970809	44970809	Frame_Shift_Del	T	-	p.H224fs
LIHC	TCGA-G3-A3CJ-01	SRBD1	ENST00000535761.1,ENST00000490133.1,ENST00000263736.4	chr2	45616231:45616738:45620083:45620268:45640252:45640432,	45620084	45620268	45620171	45620171	Frame_Shift_Del	T	-	p.I871fs
LIHC	TCGA-G3-A3CJ-01	SRBD1	ENST00000535761.1,ENST00000490133.1,ENST00000263736.4	chr2	45616231:45616738:45620083:45620268:45640252:45640432,	45620084	45620268	45620207	45620207	Frame_Shift_Del	T	-	p.I859fs
LIHC	TCGA-G3-A3CJ-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026654	48026654	Frame_Shift_Del	G	-	p.R511fs
LIHC	TCGA-G3-A3CJ-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026654	48026654	Frame_Shift_Del	G	-	p.R511fs
LIHC	TCGA-G3-A3CJ-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000460299.1,ENST00000294952.8	chr2	48692104:48692128:48692631:48692781:48698225:48698327,	48692632	48692781	48692732	48692732	Frame_Shift_Del	T	-	p.I283fs
LIHC	TCGA-G3-A3CJ-01	PPP1R21	ENST00000431614.1,ENST00000449090.2,ENST00000281394.4,ENST00000416913.1,ENST00000294952.8	chr2	48698225:48698327:48698417:48698506:48701821:48701958,	48698418	48698506	48698441	48698441	Frame_Shift_Del	T	-	p.T341fs
LIHC	TCGA-G3-A3CJ-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765474	50765474	Frame_Shift_Del	T	-	p.N728fs
LIHC	TCGA-G3-A3CJ-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54119944:54120097:54120810:54120936:54122143:54122213,	54120811	54120936	54120847	54120847	Frame_Shift_Del	T	-	p.K1334fs
LIHC	TCGA-G3-A3CJ-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000496323.1	chr2	54883050:54883135:54884986:54885183:54886290:54886403,	54884987	54885183	54885124	54885124	Frame_Shift_Del	T	-	p.F2049fs
LIHC	TCGA-G3-A3CJ-01	SPTBN1	ENST00000333896.5,ENST00000356805.4,ENST00000496323.1	chr2	54883050:54883135:54884986:54885183:54886290:54886403,	54884987	54885183	54885164	54885164	Frame_Shift_Del	C	-	p.A2062fs
LIHC	TCGA-G3-A3CJ-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6	chr2	55529007:55529208:55530204:55530288:55535944:55536159,	55530205	55530288	55530274	55530274	Frame_Shift_Del	T	-	p.R1468fs
LIHC	TCGA-G3-A3CJ-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544393	55544393	Frame_Shift_Del	T	-	p.N1232fs
LIHC	TCGA-G3-A3CJ-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544399	55544399	Frame_Shift_Del	T	-	p.N1230fs
LIHC	TCGA-G3-A3CJ-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55563816:55563954:55566599:55566784:55570783:55570928,	55566600	55566784	55566641	55566641	Frame_Shift_Del	T	-	p.I493fs
LIHC	TCGA-G3-A3CJ-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55576653:55576735:55582714:55582887:55589443:55589584,	55582715	55582887	55582839	55582839	Frame_Shift_Del	G	-	p.H226fs
LIHC	TCGA-G3-A3CJ-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55601949:55602019:55615913:55616022:55645951:55646052,	55615914	55616022	55615986	55615986	Frame_Shift_Del	T	-	p.K67fs
LIHC	TCGA-G3-A3CJ-01	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58311223:58311273:58312015:58312085:58313473:58313561,	58312016	58312085	58312072	58312072	Frame_Shift_Del	A	-	p.A81fs
LIHC	TCGA-G3-A3CJ-01	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58312015:58312085:58313473:58313561:58315475:58315581,	58313474	58313561	58313524	58313524	Frame_Shift_Del	T	-	p.F103fs
LIHC	TCGA-G3-A3CJ-01	FANCL	ENST00000403676.1,ENST00000402135.3,ENST00000449070.1,ENST00000233741.4,ENST00000427708.2,ENST00000446381.1	chr2	58390163:58390209:58390568:58390652:58392858:58392938,	58390569	58390652	58390618	58390618	Frame_Shift_Del	G	-	p.P247fs
LIHC	TCGA-G3-A3CJ-01	PAPOLG	ENST00000496283.1,ENST00000238714.3,ENST00000483370.1,ENST00000453839.1	chr2	61006771:61006910:61007841:61007914:61009019:61009140,	61007842	61007914	61007844	61007844	Frame_Shift_Del	A	-	p.E279fs
LIHC	TCGA-G3-A3CJ-01	REL	ENST00000295025.8,ENST00000394479.3	chr2	61121531:61121680:61128126:61128218:61144011:61144152,	61128127	61128218	61128136	61128136	Frame_Shift_Del	T	-	p.N104fs
LIHC	TCGA-G3-A3CJ-01	PUS10	ENST00000316752.6,ENST00000407787.1,ENST00000602599.1	chr2	61233691:61233778:61235895:61236150:61238899:61239040,	61235896	61236150	61236020	61236020	Frame_Shift_Del	T	-	p.N86fs
LIHC	TCGA-G3-A3CJ-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61304054:61304293:61308586:61308645:61310288:61310449,	61308587	61308645	61308630	61308630	Frame_Shift_Del	A	-	p.L238fs
LIHC	TCGA-G3-A3CJ-01	USP34	ENST00000411912.1,ENST00000436269.1,ENST00000398571.2	chr2	61414684:61415844:61416044:61416204:61417405:61417549,	61416045	61416204	61416051	61416051	Frame_Shift_Del	T	-	p.T3343fs
LIHC	TCGA-G3-A3CJ-01	USP34	ENST00000463046.1,ENST00000411912.1,ENST00000436269.1,ENST00000398571.2	chr2	61417405:61417549:61417652:61417793:61420035:61420115,	61417653	61417793	61417777	61417777	Frame_Shift_Del	T	-	p.N3202fs
LIHC	TCGA-G3-A3CJ-01	USP34	ENST00000411912.1,ENST00000398571.2	chr2	61438906:61439064:61441194:61441829:61447444:61447503,	61441195	61441829	61441719	61441719	Frame_Shift_Del	T	-	p.T2721fs
LIHC	TCGA-G3-A3CJ-01	USP34	ENST00000463046.1,ENST00000411912.1,ENST00000398571.2	chr2	61450382:61450431:61454201:61454353:61455779:61455854,	61454202	61454353	61454305	61454305	Frame_Shift_Del	C	-	p.E2499fs
LIHC	TCGA-G3-A3CJ-01	USP34	ENST00000484179.1,ENST00000494867.1,ENST00000398571.2	chr2	61505522:61505578:61507378:61507483:61508224:61508274,	61507379	61507483	61507429	61507429	Frame_Shift_Del	A	-	p.W1736fs
LIHC	TCGA-G3-A3CJ-01	XPO1	ENST00000428210.1,ENST00000481073.1,ENST00000406957.1,ENST00000401558.2,ENST00000404992.2	chr2	61715722:61715906:61717776:61717911:61719169:61719331,	61717777	61717911	61717866	61717866	Frame_Shift_Del	T	-	p.T645fs
LIHC	TCGA-G3-A3CJ-01	XPO1	ENST00000428210.1,ENST00000406957.1,ENST00000437159.1,ENST00000401558.2,ENST00000404992.2	chr2	61724128:61724142:61725807:61725927:61725999:61726048,	61725808	61725927	61725855	61725855	Frame_Shift_Del	G	-	p.L238fs
LIHC	TCGA-G3-A3CJ-01	FAM161A	ENST00000405894.3,ENST00000456262.1	chr2	62054238:62054393:62063144:62063244:62066555:62066659,	62063145	62063244	62063160	62063160	Frame_Shift_Del	A	-	p.F612fs
LIHC	TCGA-G3-A3CJ-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067090	62067090	Frame_Shift_Del	T	-	p.K351fs
LIHC	TCGA-G3-A3CJ-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067090	62067090	Frame_Shift_Del	T	-	p.K351fs
LIHC	TCGA-G3-A3CJ-01	CCT4	ENST00000538252.1,ENST00000394440.3,ENST00000544079.1,ENST00000544185.1	chr2	62096574:62096688:62103229:62103369:62104054:62104161,62100331:62100428:62103229:62103369:62104054:62104161,	62103230	62103369	62103270	62103270	Frame_Shift_Del	T	-	p.T293fs
LIHC	TCGA-G3-A3CJ-01	CCT4	ENST00000538252.1,ENST00000394440.3,ENST00000544079.1,ENST00000544185.1	chr2	62104054:62104187:62104527:62104649:62106003:62106146,	62104528	62104649	62104582	62104582	Frame_Shift_Del	G	-	p.P197fs
LIHC	TCGA-G3-A3CJ-01	COMMD1	ENST00000311832.5	chr2	62132892:62132993:62227835:62228117:62362965:62363114,	62227836	62228117	62227891	62227891	Frame_Shift_Del	A	-	p.Q79fs
LIHC	TCGA-G3-A3CJ-01	COMMD1	ENST00000311832.5	chr2	62132892:62132993:62227835:62228117:62362965:62363114,	62227836	62228117	62227896	62227896	Frame_Shift_Del	A	-	p.K82fs
LIHC	TCGA-G3-A3CJ-01	EHBP1	ENST00000431489.1,ENST00000494958.1,ENST00000263991.5,ENST00000413434.1,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3,ENST00000426940.1,ENST00000472809.1,ENST00000405482.1	chr2	62974529:62974587:62991400:62991496:62998473:62998527,	62991401	62991496	62991424	62991424	Frame_Shift_Del	A	-	p.I62fs
LIHC	TCGA-G3-A3CJ-01	VPS54	ENST00000354504.3,ENST00000409558.4,ENST00000272322.4	chr2	64148339:64148469:64160806:64161147:64169598:64169695,	64160807	64161147	64160908	64160908	Frame_Shift_Del	G	-	p.P393fs
LIHC	TCGA-G3-A3CJ-01	VPS54	ENST00000354504.3,ENST00000409558.4,ENST00000272322.4	chr2	64189191:64189577:64192968:64193100:64196090:64196125,	64192969	64193100	64193095	64193095	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-G3-A3CJ-01	VPS54	ENST00000272322.4	chr2	64199299:64199378:64208779:64209021:64210997:64211153,	64208780	64209021	64208791	64208791	Frame_Shift_Del	C	-	p.E123fs
LIHC	TCGA-G3-A3CJ-01	VPS54	ENST00000409558.4	chr2	64199299:64199378:64208779:64208985:64210997:64211153,	64208780	64208985	64208791	64208791	Frame_Shift_Del	C	-	p.E123fs
LIHC	TCGA-G3-A3CJ-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64780193	64780193	Frame_Shift_Del	A	-	p.K529fs
LIHC	TCGA-G3-A3CJ-01	RAB1A	ENST00000356214.7	chr2	65315430:65315824:65316072:65316204:65318116:65318212,65315430:65315824:65316072:65316204:65331867:65331940,65315430:65315824:65316072:65316204:65325104:65325198,	65316073	65316204	65316146	65316146	Frame_Shift_Del	T	-	p.N116fs
LIHC	TCGA-G3-A3CJ-01	SPRED2	ENST00000452315.1,ENST00000356388.4,ENST00000443619.2	chr2	65543867:65544017:65559120:65559185:65561738:65561907,	65559121	65559185	65559124	65559124	Frame_Shift_Del	A	-	p.F145fs
LIHC	TCGA-G3-A3CJ-01	MEIS1	ENST00000272369.9,ENST00000407092.2,ENST00000488550.1,ENST00000560281.2	chr2	66662689:66663000:66664868:66665095:66666974:66667099,	66664869	66665095	66664929	66664929	Frame_Shift_Del	G	-	p.G25fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP25	ENST00000463483.1,ENST00000491237.1,ENST00000544262.1	chr2	68962240:68962392:69002352:69002552:69009364:69009418,68937636:68937830:69002352:69002552:69009364:69009418,	69002353	69002552	69002417	69002417	Frame_Shift_Del	C	-	p.N42fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP25	ENST00000497259.1,ENST00000409030.3,ENST00000479844.1,ENST00000409202.3,ENST00000409220.1,ENST00000295381.3,ENST00000467265.1	chr2	69046254:69046451:69049471:69050004:69053118:69053434,	69049472	69050004	69049633	69049633	Frame_Shift_Del	T	-	p.A453fs
LIHC	TCGA-G3-A3CJ-01	GKN2	ENST00000328895.4,ENST00000481498.1	chr2	69174278:69174389:69177257:69177395:69177833:69177887,	69177258	69177395	69177322	69177322	Frame_Shift_Del	T	-	p.N47fs
LIHC	TCGA-G3-A3CJ-01	GKN2	ENST00000328895.4,ENST00000481498.1	chr2	69174278:69174389:69177257:69177395:69177833:69177887,	69177258	69177395	69177390	69177390	Frame_Shift_Del	A	-	p.F24fs
LIHC	TCGA-G3-A3CJ-01	ANTXR1	ENST00000303714.4	chr2	69397379:69397421:69408917:69409013:69409624:69409792,	69408918	69409013	69408945	69408945	Frame_Shift_Del	A	-	p.K374fs
LIHC	TCGA-G3-A3CJ-01	GFPT1	ENST00000357308.4,ENST00000361060.5	chr2	69590742:69590802:69597132:69597240:69601137:69601245,	69597133	69597240	69597187	69597187	Frame_Shift_Del	T	-	p.I57fs
LIHC	TCGA-G3-A3CJ-01	GFPT1	ENST00000361060.5	chr2	69597132:69597240:69601137:69601245:69614196:69614380,	69601138	69601245	69601161	69601161	Frame_Shift_Del	T	-	p.E31fs
LIHC	TCGA-G3-A3CJ-01	NFU1	ENST00000303698.3,ENST00000471185.1,ENST00000450796.2,ENST00000410022.2,ENST00000484177.1,ENST00000394305.1,ENST00000419370.1	chr2	69633164:69633214:69642316:69642431:69646669:69646736,	69642317	69642431	69642350	69642350	Frame_Shift_Del	G	-	p.L151fs
LIHC	TCGA-G3-A3CJ-01	NFU1	ENST00000419370.1	chr2	69646669:69646736:69650713:69650849:69659033:69659137,69646669:69646736:69650713:69650849:69657035:69657153,	69650714	69650849	69650752	69650752	Frame_Shift_Del	A	-	p.F88fs
LIHC	TCGA-G3-A3CJ-01	GMCL1	ENST00000282570.3,ENST00000471404.1	chr2	70070280:70070393:70071262:70071328:70074674:70074759,	70071263	70071328	70071313	70071313	Frame_Shift_Del	T	-	p.L248fs
LIHC	TCGA-G3-A3CJ-01	GMCL1	ENST00000282570.3	chr2	70092031:70092107:70096850:70096996:70098876:70098964,	70096851	70096996	70096871	70096871	Frame_Shift_Del	T	-	p.G413fs
LIHC	TCGA-G3-A3CJ-01	C2orf42	ENST00000264434.2	chr2	70406663:70406774:70408294:70409129:70409798:70410067,	70408295	70409129	70408838	70408838	Frame_Shift_Del	C	-	p.V94fs
LIHC	TCGA-G3-A3CJ-01	C2orf42	ENST00000264434.2	chr2	70406663:70406774:70408294:70409129:70409798:70410067,	70408295	70409129	70408922	70408922	Frame_Shift_Del	T	-	p.I67fs
LIHC	TCGA-G3-A3CJ-01	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351450	71351450	Frame_Shift_Del	A	-	p.F88fs
LIHC	TCGA-G3-A3CJ-01	ZNF638	ENST00000494621.1,ENST00000466975.1,ENST00000377802.2,ENST00000410075.1,ENST00000409544.1,ENST00000475743.1,ENST00000264447.4,ENST00000355812.3,ENST00000464375.1,ENST00000466330.1	chr2	71590282:71590321:71591083:71591382:71592558:71592618,	71591084	71591382	71591281	71591281	Frame_Shift_Del	C	-	p.S539fs
LIHC	TCGA-G3-A3CJ-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650512	71650512	Frame_Shift_Del	G	-	p.G1290fs
LIHC	TCGA-G3-A3CJ-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650607	71650607	Frame_Shift_Del	A	-	p.R1321fs
LIHC	TCGA-G3-A3CJ-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71653924	71653924	Frame_Shift_Del	T	-	p.L1642fs
LIHC	TCGA-G3-A3CJ-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1,ENST00000483421.3,ENST00000355812.3	chr2	71651779:71651845:71653589:71654544:71655676:71655781,	71653590	71654544	71654270	71654270	Frame_Shift_Del	G	-	p.E1757fs
LIHC	TCGA-G3-A3CJ-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71797728:71797871:71801327:71801501:71816722:71816816,	71801328	71801501	71801492	71801492	Frame_Shift_Del	G	-	p.E1113fs
LIHC	TCGA-G3-A3CJ-01	EXOC6B	ENST00000410104.1	chr2	72960199:72960247:72968432:72968598:73052926:73053134,	72968433	72968598	72968444	72968444	Frame_Shift_Del	G	-	p.Q90fs
LIHC	TCGA-G3-A3CJ-01	CCT7	ENST00000538797.1	chr2	73470173:73470257:73471671:73471843:73474889:73474917,	73471672	73471843	73471802	73471802	Frame_Shift_Del	A	-	p.K149fs
LIHC	TCGA-G3-A3CJ-01	CCT7	ENST00000398422.2,ENST00000258091.5,ENST00000540468.1,ENST00000538797.1,ENST00000539919.1,ENST00000473786.1,ENST00000537131.1	chr2	73474889:73475054:73476118:73476307:73476946:73476972,	73476119	73476307	73476221	73476221	Frame_Shift_Del	G	-	p.G252fs
LIHC	TCGA-G3-A3CJ-01	CCT7	ENST00000398422.2,ENST00000258091.5,ENST00000540468.1,ENST00000538797.1,ENST00000539919.1,ENST00000537131.1	chr2	73477461:73477566:73478353:73478560:73479767:73480132,	73478354	73478560	73478437	73478437	Frame_Shift_Del	A	-	p.G385fs
LIHC	TCGA-G3-A3CJ-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73646250:73646446:73649984:73650102:73651557:73652030,	73649985	73650102	73650013	73650013	Frame_Shift_Del	T	-	p.D225fs
LIHC	TCGA-G3-A3CJ-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678072	73678072	Frame_Shift_Del	C	-	p.S1472fs
LIHC	TCGA-G3-A3CJ-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678098	73678098	Frame_Shift_Del	C	-	p.P1481fs
LIHC	TCGA-G3-A3CJ-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73679008	73679008	Frame_Shift_Del	T	-	p.V1784fs
LIHC	TCGA-G3-A3CJ-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6,ENST00000423048.1	chr2	73761950:73762076:73777393:73777564:73784346:73784387,	73777394	73777564	73777538	73777538	Frame_Shift_Del	A	-	p.E3350fs
LIHC	TCGA-G3-A3CJ-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6,ENST00000464408.2	chr2	73827961:73828008:73828321:73828563:73829311:73829495,	73828322	73828563	73828344	73828344	Frame_Shift_Del	G	-	p.V3964fs
LIHC	TCGA-G3-A3CJ-01	TPRKB	ENST00000318190.7,ENST00000409716.2	chr2	73957711:73957863:73959289:73959412:73961555:73961715,73957711:73957863:73959289:73959412:73959710:73959827,	73959290	73959412	73959304	73959304	Frame_Shift_Del	A	-	p.S123fs
LIHC	TCGA-G3-A3CJ-01	STAMBP	ENST00000424659.1	chr2	74056093:74056123:74057971:74058186:74071939:74072015,74056157:74056197:74057971:74058186:74071939:74072015,	74057972	74058186	74058146	74058146	Frame_Shift_Del	A	-	p.N55fs
LIHC	TCGA-G3-A3CJ-01	ACTG2	ENST00000438902.2,ENST00000409624.1,ENST00000345517.3,ENST00000409731.3	chr2	74141910:74141998:74143710:74143892:74146558:74146802,	74143711	74143892	74143870	74143870	Frame_Shift_Del	C	-	p.A322fs
LIHC	TCGA-G3-A3CJ-01	DGUOK	ENST00000348222.1	chr2	74154034:74154179:74173845:74174033:74185272:74185372,74166036:74166149:74173845:74174033:74177711:74177859,74166036:74166149:74173845:74174033:74185272:74185372,	74173846	74174033	74173892	74173892	Frame_Shift_Del	G	-	p.R101fs
LIHC	TCGA-G3-A3CJ-01	MOB1A	ENST00000396049.4	chr2	74383544:74383772:74386217:74386381:74392344:74392478,	74386218	74386381	74386265	74386265	Frame_Shift_Del	C	-	p.E176fs
LIHC	TCGA-G3-A3CJ-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755543:74755616:74755877:74756062:74756258:74756409,	74755878	74756062	74755943	74755943	Frame_Shift_Del	G	-	p.P153fs
LIHC	TCGA-G3-A3CJ-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74755943	74755943	Frame_Shift_Del	G	-	p.P153fs
LIHC	TCGA-G3-A3CJ-01	LOXL3	ENST00000264094.3,ENST00000470907.2,ENST00000409549.1,ENST00000393937.2,ENST00000409986.1	chr2	74761226:74761363:74761442:74761558:74761657:74761901,	74761443	74761558	74761511	74761511	Frame_Shift_Del	G	-	p.P624fs
LIHC	TCGA-G3-A3CJ-01	MRPL19	ENST00000409374.1	chr2	75882025:75882043:75882189:75882428:75897704:75897879,	75882190	75882428	75882230	75882230	Frame_Shift_Del	G	-	p.W233fs
LIHC	TCGA-G3-A3CJ-01	SUCLG1	ENST00000430989.1	chr2	84670407:84670524:84676772:84676876:84686296:84686360,	84676773	84676876	84676836	84676836	Frame_Shift_Del	A	-	p.S46fs
LIHC	TCGA-G3-A3CJ-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84752692:84752862:84756027:84756290:84771356:84771453,	84756028	84756290	84756212	84756212	Frame_Shift_Del	A	-	p.E195fs
LIHC	TCGA-G3-A3CJ-01	TCF7L1	ENST00000282111.3	chr2	85529606:85529739:85531017:85531120:85531377:85531461,	85531018	85531120	85531022	85531022	Frame_Shift_Del	C	-	p.I221fs
LIHC	TCGA-G3-A3CJ-01	RETSAT	ENST00000263854.6,ENST00000438611.4,ENST00000429806.1	chr2	85570815:85570921:85571361:85571471:85571716:85571855,	85571362	85571471	85571447	85571447	Frame_Shift_Del	G	-	p.P427fs
LIHC	TCGA-G3-A3CJ-01	GGCX	ENST00000233838.4,ENST00000430215.3	chr2	85783340:85783383:85785562:85785728:85786039:85786198,	85785563	85785728	85785645	85785645	Frame_Shift_Del	C	-	p.D153fs
LIHC	TCGA-G3-A3CJ-01	GGCX	ENST00000428479.3	chr2	85783340:85783383:85785562:85785785:85786039:85786198,	85785563	85785785	85785645	85785645	Frame_Shift_Del	C	-	p.D153fs
LIHC	TCGA-G3-A3CJ-01	USP39	ENST00000455732.1,ENST00000465282.1,ENST00000459775.1,ENST00000458268.1	chr2	85846342:85846412:85848607:85848702:85850768:85850905,85846342:85846412:85848607:85848702:85850748:85850901,	85848608	85848702	85848696	85848696	Frame_Shift_Del	T	-	p.F143fs
LIHC	TCGA-G3-A3CJ-01	SFTPB	ENST00000409383.1,ENST00000393822.3,ENST00000473692.1,ENST00000342375.3,ENST00000428225.1	chr2	85894228:85894300:85894801:85894929:85895239:85895295,	85894802	85894929	85894893	85894893	Frame_Shift_Del	C	-	p.G47fs
LIHC	TCGA-G3-A3CJ-01	PTCD3	ENST00000464541.1	chr2	86355071:86355114:86357770:86358229:86359440:86359547,	86357771	86358229	86358206	86358206	Frame_Shift_Del	T	-	p.F416fs
LIHC	TCGA-G3-A3CJ-01	IMMT	ENST00000410111.3,ENST00000474969.1,ENST00000442664.2	chr2	86398330:86398468:86400772:86400884:86406555:86406745,	86400773	86400884	86400799	86400799	Frame_Shift_Del	T	-	p.K132fs
LIHC	TCGA-G3-A3CJ-01	KDM3A	ENST00000441719.1,ENST00000312912.5,ENST00000542128.1,ENST00000409556.1,ENST00000409064.1	chr2	86697326:86697531:86701898:86702113:86704999:86705152,	86701899	86702113	86701989	86701989	Frame_Shift_Del	T	-	p.P605fs
LIHC	TCGA-G3-A3CJ-01	RMND5A	ENST00000283632.4	chr2	86980580:86980681:86992149:86992316:86992981:86993147,	86992150	86992316	86992167	86992167	Frame_Shift_Del	G	-	p.R180fs
LIHC	TCGA-G3-A3CJ-01	RMND5A	ENST00000283632.4	chr2	86980580:86980681:86992149:86992316:86992981:86993147,	86992150	86992316	86992280	86992280	Frame_Shift_Del	A	-	p.K218fs
LIHC	TCGA-G3-A3CJ-01	THNSL2	ENST00000324166.5,ENST00000358591.2	chr2	88482466:88482592:88484846:88484998:88485416:88485749,	88484847	88484998	88484939	88484939	Frame_Shift_Del	C	-	p.C390fs
LIHC	TCGA-G3-A3CJ-01	MRPS5	ENST00000272418.2	chr2	95767421:95767468:95770384:95770475:95772167:95772202,	95770385	95770475	95770462	95770462	Frame_Shift_Del	A	-	p.F229fs
LIHC	TCGA-G3-A3CJ-01	TMEM127	ENST00000432959.1	chr2	96920570:96920735:96930875:96931227:96931606:96931732,	96930876	96931227	96930918	96930918	Frame_Shift_Del	C	-	p.V68fs
LIHC	TCGA-G3-A3CJ-01	SNRNP200	ENST00000323853.5,ENST00000429650.1,ENST00000497539.1	chr2	96943276:96943453:96943544:96943688:96943974:96944096,	96943545	96943688	96943670	96943670	Frame_Shift_Del	G	-	p.H1877fs
LIHC	TCGA-G3-A3CJ-01	COX5B	ENST00000258424.2,ENST00000491989.1,ENST00000464949.1	chr2	98263529:98263603:98263806:98263906:98264458:98264642,	98263807	98263906	98263857	98263857	Frame_Shift_Del	C	-	p.D76fs
LIHC	TCGA-G3-A3CJ-01	TMEM131	ENST00000186436.5	chr2	98382940:98383065:98388759:98388887:98392305:98392481,	98388760	98388887	98388804	98388804	Frame_Shift_Del	T	-	p.K1468fs
LIHC	TCGA-G3-A3CJ-01	TMEM131	ENST00000186436.5	chr2	98392305:98392481:98408848:98409447:98409857:98410016,	98408849	98409447	98408912	98408912	Frame_Shift_Del	G	-	p.H1361fs
LIHC	TCGA-G3-A3CJ-01	TMEM131	ENST00000425805.2,ENST00000418629.2,ENST00000438715.1,ENST00000186436.5	chr2	98458277:98458400:98460607:98460724:98475766:98475890,	98460608	98460724	98460644	98460644	Frame_Shift_Del	A	-	p.F188fs
LIHC	TCGA-G3-A3CJ-01	VWA3B	ENST00000416277.1,ENST00000433678.1,ENST00000409460.1,ENST00000477737.1,ENST00000432242.1,ENST00000435344.1,ENST00000422503.2,ENST00000451075.2	chr2	98737761:98737921:98744701:98744871:98750286:98750360,	98744702	98744871	98744842	98744842	Frame_Shift_Del	A	-	p.L281fs
LIHC	TCGA-G3-A3CJ-01	CNGA3	ENST00000409937.1	chr2	98994149:98994263:98994520:98994685:98996637:98996817,	98994521	98994685	98994537	98994537	Frame_Shift_Del	A	-	p.K28fs
LIHC	TCGA-G3-A3CJ-01	INPP4A	ENST00000409851.3,ENST00000523221.1,ENST00000074304.5	chr2	99172015:99172154:99175925:99175958:99179927:99180100,99172015:99172271:99175925:99175958:99179927:99180100,	99175926	99175958	99175934	99175934	Frame_Shift_Del	C	-	p.P618fs
LIHC	TCGA-G3-A3CJ-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232757	99232757	Frame_Shift_Del	T	-	p.A180fs
LIHC	TCGA-G3-A3CJ-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99232669:99232809:99232894:99232996:99234630:99234975,	99232895	99232996	99232942	99232942	Frame_Shift_Del	T	-	p.L214fs
LIHC	TCGA-G3-A3CJ-01	MGAT4A	ENST00000393487.1,ENST00000460768.1	chr2	99294883:99294934:99342701:99343030:99347510:99347556,	99342702	99343030	99342769	99342769	Frame_Shift_Del	G	-	p.A9fs
LIHC	TCGA-G3-A3CJ-01	KIAA1211L	ENST00000397899.2	chr2	99413830:99414000:99438319:99440000:99443437:99443632,	99438320	99440000	99438339	99438339	Frame_Shift_Del	C	-	p.R799fs
LIHC	TCGA-G3-A3CJ-01	MITD1	ENST00000422537.2,ENST00000289359.2,ENST00000466880.1	chr2	99786999:99787115:99787805:99787892:99787972:99788109,	99787806	99787892	99787835	99787835	Frame_Shift_Del	T	-	p.T150fs
LIHC	TCGA-G3-A3CJ-01	TXNDC9	ENST00000422767.2	chr2	99935970:99936262:99938417:99938672:99943997:99944116,99935970:99936262:99938417:99938672:99949484:99949705,	99938418	99938672	99938591	99938591	Frame_Shift_Del	T	-	p.K130fs
LIHC	TCGA-G3-A3CJ-01	TXNDC9	ENST00000264255.3,ENST00000409434.1,ENST00000409705.1	chr2	99938573:99938672:99943997:99944116:99949446:99949705,99938573:99938672:99943997:99944116:99949484:99949705,	99943998	99944116	99944092	99944092	Frame_Shift_Del	C	-	p.E72fs
LIHC	TCGA-G3-A3CJ-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977955	99977955	Frame_Shift_Del	A	-	p.R197fs
LIHC	TCGA-G3-A3CJ-01	EIF5B	ENST00000289371.6	chr2	99999242:99999384:100006180:100006312:100006681:100006864,	100006181	100006312	100006202	100006202	Frame_Shift_Del	A	-	p.K766fs
LIHC	TCGA-G3-A3CJ-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2,ENST00000430789.1	chr2	100360565:100360602:100368682:100368763:100453938:100453986,	100368683	100368763	100368698	100368698	Frame_Shift_Del	A	-	p.F329fs
LIHC	TCGA-G3-A3CJ-01	LONRF2	ENST00000393437.3,ENST00000409647.1	chr2	100915297:100915412:100915687:100915781:100916178:100916380,	100915688	100915781	100915732	100915732	Frame_Shift_Del	C	-	p.G439fs
LIHC	TCGA-G3-A3CJ-01	TBC1D8	ENST00000376840.4,ENST00000409318.1	chr2	101645952:101646238:101648729:101648847:101650005:101650220,	101648730	101648847	101648755	101648755	Frame_Shift_Del	G	-	p.P637fs
LIHC	TCGA-G3-A3CJ-01	RNF149	ENST00000295317.3,ENST00000424632.1	chr2	101898320:101898519:101902542:101902639:101905434:101905517,	101902543	101902639	101902630	101902630	Frame_Shift_Del	A	-	p.F291fs
LIHC	TCGA-G3-A3CJ-01	RFX8	ENST00000481179.1,ENST00000376826.2,ENST00000428343.1	chr2	102013865:102014186:102018897:102019214:102022404:102022519,	102018898	102019214	102019061	102019061	Frame_Shift_Del	A	-	p.F474fs
LIHC	TCGA-G3-A3CJ-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000421882.1,ENST00000456652.1,ENST00000350198.4,ENST00000417294.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102493464:102493608:102499012:102499147:102501648:102501749,	102499013	102499147	102499119	102499119	Frame_Shift_Del	T	-	p.D934fs
LIHC	TCGA-G3-A3CJ-01	IL1RL1	ENST00000427077.1	chr2	102957125:102957288:102957647:102957817:102958682:102958754,	102957648	102957817	102957695	102957695	Frame_Shift_Del	A	-	p.N220fs
LIHC	TCGA-G3-A3CJ-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000334376.3,ENST00000233957.1	chr2	102979120:102979178:102984284:102984528:102988412:102988578,	102984285	102984528	102984386	102984386	Frame_Shift_Del	A	-	p.K54fs
LIHC	TCGA-G3-A3CJ-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000233957.1	chr2	102998079:102998142:103001337:103001458:103003320:103003460,	103001338	103001458	103001355	103001355	Frame_Shift_Del	A	-	p.N236fs
LIHC	TCGA-G3-A3CJ-01	IL18R1	ENST00000409599.1,ENST00000410040.1,ENST00000233957.1	chr2	103006518:103006677:103010928:103011087:103012990:103013346,	103010929	103011087	103010948	103010948	Frame_Shift_Del	T	-	p.A377fs
LIHC	TCGA-G3-A3CJ-01	TMEM182	ENST00000486293.1	chr2	103380787:103380886:103414321:103414459:103431206:103431563,103380787:103380886:103414321:103414459:103459870:103460352,	103414322	103414459	103414356	103414356	Frame_Shift_Del	G	-	p.L122fs
LIHC	TCGA-G3-A3CJ-01	C2orf49	ENST00000258457.2	chr2	105956039:105956206:105959304:105959680:105961771:105962053,	105959305	105959680	105959384	105959384	Frame_Shift_Del	A	-	p.K117fs
LIHC	TCGA-G3-A3CJ-01	C2orf40	ENST00000437659.1,ENST00000238044.3,ENST00000409944.1	chr2	106688299:106688347:106690341:106690499:106694220:106694356,	106690342	106690499	106690446	106690446	Frame_Shift_Del	C	-	p.P42fs
LIHC	TCGA-G3-A3CJ-01	UXS1	ENST00000283148.7,ENST00000444193.1,ENST00000409501.3,ENST00000540130.1,ENST00000457835.1	chr2	106742075:106742135:106746129:106746234:106761645:106761826,	106746130	106746234	106746162	106746162	Frame_Shift_Del	T	-	p.K182fs
LIHC	TCGA-G3-A3CJ-01	SULT1C2	ENST00000442801.1	chr2	108910684:108910810:108921029:108921156:108921627:108921722,	108921030	108921156	108921105	108921105	Frame_Shift_Del	C	-	p.P162fs
LIHC	TCGA-G3-A3CJ-01	SULT1C2	ENST00000409880.1	chr2	108910684:108910810:108921042:108921156:108921627:108921722,	108921043	108921156	108921105	108921105	Frame_Shift_Del	C	-	p.P162fs
LIHC	TCGA-G3-A3CJ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086180	109086180	Frame_Shift_Del	A	-	p.E132fs
LIHC	TCGA-G3-A3CJ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087638	109087638	Frame_Shift_Del	A	-	p.E618fs
LIHC	TCGA-G3-A3CJ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087753	109087753	Frame_Shift_Del	A	-	p.L656fs
LIHC	TCGA-G3-A3CJ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087884	109087884	Frame_Shift_Del	A	-	p.E700fs
LIHC	TCGA-G3-A3CJ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088331	109088331	Frame_Shift_Del	A	-	p.E849fs
LIHC	TCGA-G3-A3CJ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109088418	109088418	Frame_Shift_Del	T	-	p.L879fs
LIHC	TCGA-G3-A3CJ-01	GCC2	ENST00000482325.1,ENST00000393321.2,ENST00000309863.6,ENST00000447558.1	chr2	109098165:109098272:109098742:109098907:109099517:109099612,	109098743	109098907	109098879	109098879	Frame_Shift_Del	A	-	p.E1106fs
LIHC	TCGA-G3-A3CJ-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381467	109381467	Frame_Shift_Del	A	-	p.Q1491fs
LIHC	TCGA-G3-A3CJ-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383152	109383152	Frame_Shift_Del	A	-	p.K2053fs
LIHC	TCGA-G3-A3CJ-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383757	109383757	Frame_Shift_Del	A	-	p.R2254fs
LIHC	TCGA-G3-A3CJ-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109383990	109383990	Frame_Shift_Del	T	-	p.V2332fs
LIHC	TCGA-G3-A3CJ-01	CCDC138	ENST00000295124.4,ENST00000412964.2,ENST00000409529.2,ENST00000456512.1	chr2	109429275:109429383:109432396:109432561:109455640:109455757,	109432397	109432561	109432502	109432502	Frame_Shift_Del	A	-	p.K384fs
LIHC	TCGA-G3-A3CJ-01	SH3RF3	ENST00000309415.6	chr2	109745996:109746569:109964129:109964405:109988041:109988137,	109964130	109964405	109964285	109964285	Frame_Shift_Del	C	-	p.L243fs
LIHC	TCGA-G3-A3CJ-01	SEPT10	ENST00000461295.1	chr2	110332157:110332344:110342702:110342898:110371374:110371412,	110342703	110342898	110342843	110342843	Frame_Shift_Del	A	-	p.F91fs
LIHC	TCGA-G3-A3CJ-01	SEPT10	ENST00000397714.2	chr2	110342702:110342898:110343297:110343415:110350627:110350696,110342702:110342898:110343297:110343415:110371374:110371412,	110343298	110343415	110343368	110343368	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-G3-A3CJ-01	BUB1	ENST00000409311.1,ENST00000302759.6,ENST00000465029.1,ENST00000466333.1	chr2	111431662:111431801:111431882:111431942:111435546:111435640,	111431883	111431942	111431887	111431887	Frame_Shift_Del	C	-	p.E28fs
LIHC	TCGA-G3-A3CJ-01	BUB1	ENST00000409311.1,ENST00000302759.6,ENST00000465029.1,ENST00000466333.1	chr2	111431662:111431801:111431882:111431942:111435546:111435640,	111431883	111431942	111431929	111431929	Frame_Shift_Del	G	-	p.H14fs
LIHC	TCGA-G3-A3CJ-01	ACOXL	ENST00000439055.1,ENST00000389811.4,ENST00000340561.4,ENST00000448863.1	chr2	111525944:111526041:111542308:111542392:111551226:111551277,	111542309	111542392	111542315	111542315	Frame_Shift_Del	A	-	p.K28fs
LIHC	TCGA-G3-A3CJ-01	ACOXL	ENST00000439055.1,ENST00000417074.1,ENST00000389811.4	chr2	111598947:111598982:111666365:111666482:111691065:111691219,	111666366	111666482	111666385	111666385	Frame_Shift_Del	A	-	p.K270fs
LIHC	TCGA-G3-A3CJ-01	ACOXL	ENST00000433706.1,ENST00000389811.4	chr2	111691065:111691219:111721200:111721290:111744684:111744794,	111721201	111721290	111721252	111721252	Frame_Shift_Del	T	-	p.F371fs
LIHC	TCGA-G3-A3CJ-01	BCL2L11	ENST00000393256.3,ENST00000357757.2	chr2	111878505:111878765:111881309:111881716:111907620:111907724,	111881310	111881716	111881505	111881505	Frame_Shift_Del	G	-	p.Q61fs
LIHC	TCGA-G3-A3CJ-01	FBLN7	ENST00000472377.1,ENST00000409450.3,ENST00000409903.1,ENST00000331203.2	chr2	112917324:112917412:112922577:112922748:112933290:112933416,	112922578	112922748	112922727	112922727	Frame_Shift_Del	G	-	p.G129fs
LIHC	TCGA-G3-A3CJ-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2,ENST00000468475.1	chr2	113304997:113305144:113306843:113306976:113308442:113308485,	113306844	113306976	113306849	113306849	Frame_Shift_Del	G	-	p.M166fs
LIHC	TCGA-G3-A3CJ-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2,ENST00000468475.1	chr2	113304997:113305144:113306843:113306976:113308442:113308485,	113306844	113306976	113306858	113306858	Frame_Shift_Del	T	-	p.Y169fs
LIHC	TCGA-G3-A3CJ-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000333990.6,ENST00000263331.5,ENST00000417433.2,ENST00000468475.1	chr2	113304997:113305144:113306843:113306976:113308442:113308485,	113306844	113306976	113306878	113306878	Frame_Shift_Del	A	-	p.E176fs
LIHC	TCGA-G3-A3CJ-01	CKAP2L	ENST00000435431.1	chr2	113509843:113510051:113513553:113513711:113514469:113514791,	113513554	113513711	113513608	113513608	Frame_Shift_Del	T	-	p.N282fs
LIHC	TCGA-G3-A3CJ-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113940743	113940743	Frame_Shift_Del	G	-	p.W237fs
LIHC	TCGA-G3-A3CJ-01	PAX8	ENST00000497038.2,ENST00000485840.1,ENST00000429538.3	chr2	113984731:113984833:113992970:113993159:113994177:113994269,	113992971	113993159	113993122	113993122	Frame_Shift_Del	G	-	p.P312fs
LIHC	TCGA-G3-A3CJ-01	PAX8	ENST00000468980.2	chr2	113992970:113993080:113994177:113994298:113999127:113999260,113984731:113984833:113994177:113994298:113999127:113999260,	113994178	113994298	113994231	113994231	Frame_Shift_Del	T	-	p.N282fs
LIHC	TCGA-G3-A3CJ-01	DPP10	ENST00000393147.2	chr2	115919810:115919849:116066814:116066929:116101392:116101488,115919178:115919605:116066814:116066929:116101392:116101488,	116066815	116066929	116066853	116066853	Frame_Shift_Del	G	-	p.K33fs
LIHC	TCGA-G3-A3CJ-01	MARCO	ENST00000327097.4,ENST00000541757.1	chr2	119735046:119735091:119735403:119735511:119738984:119739083,	119735404	119735511	119735466	119735466	Frame_Shift_Del	G	-	p.G163fs
LIHC	TCGA-G3-A3CJ-01	MARCO	ENST00000327097.4,ENST00000541757.1	chr2	119748164:119748209:119749352:119749451:119750007:119750052,	119749353	119749451	119749400	119749400	Frame_Shift_Del	C	-	p.P308fs
LIHC	TCGA-G3-A3CJ-01	SCTR	ENST00000019103.5	chr2	120221698:120221831:120223364:120223462:120231028:120231132,	120223365	120223462	120223439	120223439	Frame_Shift_Del	T	-	p.K143fs
LIHC	TCGA-G3-A3CJ-01	SCTR	ENST00000485440.1	chr2	120223364:120223462:120231028:120231132:120236386:120236494,120221698:120221831:120231028:120231132:120236386:120236494,	120231029	120231132	120231130	120231130	Frame_Shift_Del	A	-	p.S102fs
LIHC	TCGA-G3-A3CJ-01	EPB41L5	ENST00000331393.4,ENST00000452780.1,ENST00000443902.2,ENST00000443124.1,ENST00000263713.5	chr2	120830753:120830796:120831675:120831754:120833051:120833096,	120831676	120831754	120831716	120831716	Frame_Shift_Del	T	-	p.Y123fs
LIHC	TCGA-G3-A3CJ-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000314490.11,ENST00000433812.1	chr2	121708818:121709021:121712820:121713006:121726289:121726491,	121712821	121713006	121712878	121712878	Frame_Shift_Del	C	-	p.T172fs
LIHC	TCGA-G3-A3CJ-01	TFCP2L1	ENST00000263707.5	chr2	121995198:121995292:121995377:121995426:121997133:121997225,	121995378	121995426	121995406	121995406	Frame_Shift_Del	G	-	p.P294fs
LIHC	TCGA-G3-A3CJ-01	TFCP2L1	ENST00000263707.5	chr2	121995377:121995426:121997133:121997225:121999934:122000045,	121997134	121997225	121997182	121997182	Frame_Shift_Del	G	-	p.P271fs
LIHC	TCGA-G3-A3CJ-01	TFCP2L1	ENST00000263707.5	chr2	121995377:121995426:121997133:121997225:121999934:122000045,	121997134	121997225	121997191	121997191	Frame_Shift_Del	T	-	p.N268fs
LIHC	TCGA-G3-A3CJ-01	CLASP1	ENST00000409078.3,ENST00000452274.2,ENST00000541859.1,ENST00000263710.4,ENST00000541377.1,ENST00000397587.3,ENST00000455322.2,ENST00000545861.1,ENST00000430234.1	chr2	122216491:122216551:122217555:122217701:122218676:122218769,	122217556	122217701	122217694	122217694	Frame_Shift_Del	T	-	p.K347fs
LIHC	TCGA-G3-A3CJ-01	TSN	ENST00000490104.1	chr2	122513260:122513421:122514815:122515010:122516285:122516382,	122514816	122515010	122514862	122514862	Frame_Shift_Del	T	-	p.I38fs
LIHC	TCGA-G3-A3CJ-01	TSN	ENST00000409193.1	chr2	122513260:122513421:122514815:122514909:122516285:122516382,122513278:122513529:122514815:122514909:122516285:122516382,122513746:122514267:122514815:122514909:122516285:122516382,	122514816	122514909	122514862	122514862	Frame_Shift_Del	T	-	p.I38fs
LIHC	TCGA-G3-A3CJ-01	CNTNAP5	ENST00000431078.1	chr2	125530375:125530594:125547478:125547718:125555672:125555897,	125547479	125547718	125547567	125547567	Frame_Shift_Del	A	-	p.A946fs
LIHC	TCGA-G3-A3CJ-01	PROC	ENST00000442644.1	chr2	128180609:128180747:128180906:128180984:128183660:128183707,	128180907	128180984	128180908	128180908	Frame_Shift_Del	G	-	p.E209fs
LIHC	TCGA-G3-A3CJ-01	PROC	ENST00000422777.3,ENST00000234071.3	chr2	128180609:128180747:128180849:128180984:128183660:128183707,	128180850	128180984	128180908	128180908	Frame_Shift_Del	G	-	p.E209fs
LIHC	TCGA-G3-A3CJ-01	WDR33	ENST00000436787.1,ENST00000322313.4	chr2	128484225:128484351:128520635:128520733:128522401:128522553,	128520636	128520733	128520664	128520664	Frame_Shift_Del	A	-	p.L232fs
LIHC	TCGA-G3-A3CJ-01	WDR33	ENST00000409658.3,ENST00000393006.1	chr2	128526506:128526575:128528351:128528578:128568585:128568721,	128528352	128528578	128528356	128528356	Frame_Shift_Del	A	-	p.L67fs
LIHC	TCGA-G3-A3CJ-01	POTEF	ENST00000361163.4,ENST00000409914.2,ENST00000360967.5,ENST00000357462.5	chr2	130843386:130843568:130843915:130843960:130845639:130845710,	130843916	130843960	130843944	130843944	Frame_Shift_Del	G	-	p.P523fs
LIHC	TCGA-G3-A3CJ-01	POTEF	ENST00000361163.4,ENST00000409914.2,ENST00000360967.5,ENST00000357462.5	chr2	130843386:130843568:130843915:130843960:130845639:130845710,	130843916	130843960	130843946	130843946	Frame_Shift_Del	T	-	p.E522fs
LIHC	TCGA-G3-A3CJ-01	SMPD4	ENST00000453750.1,ENST00000491319.2,ENST00000439886.1,ENST00000351288.6,ENST00000412570.1,ENST00000452225.2,ENST00000339679.7,ENST00000491128.1,ENST00000454468.1,ENST00000443958.2,ENST00000431183.2,ENST00000482171.1,ENST00000426662.2,ENST00000409031.1,ENST00000433118.1	chr2	130910682:130910744:130910891:130911023:130911274:130911508,	130910892	130911023	130910956	130910956	Frame_Shift_Del	T	-	p.K693fs
LIHC	TCGA-G3-A3CJ-01	MZT2B	ENST00000409255.1	chr2	130940252:130940348:130941359:130941539:130948041:130948052,	130941360	130941539	130941490	130941490	Frame_Shift_Del	C	-	p.G150fs
LIHC	TCGA-G3-A3CJ-01	FAM168B	ENST00000409185.1,ENST00000389915.3	chr2	131809939:131810025:131810463:131810588:131812844:131813022,	131810464	131810588	131810486	131810486	Frame_Shift_Del	G	-	p.P193fs
LIHC	TCGA-G3-A3CJ-01	PLEKHB2	ENST00000409158.1	chr2	131888293:131888333:131890474:131890588:131897739:131897848,	131890475	131890588	131890575	131890575	Frame_Shift_Del	C	-	p.T145fs
LIHC	TCGA-G3-A3CJ-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135170439:135170586:135180373:135180490:135185935:135186010,	135180374	135180490	135180477	135180477	Frame_Shift_Del	T	-	p.I594fs
LIHC	TCGA-G3-A3CJ-01	TMEM163	ENST00000476823.1,ENST00000281924.6	chr2	135213334:135214347:135215602:135215744:135223684:135223796,	135215603	135215744	135215726	135215726	Frame_Shift_Del	C	-	p.G230fs
LIHC	TCGA-G3-A3CJ-01	ACMSD	ENST00000485893.1,ENST00000356140.5	chr2	135602802:135602847:135616830:135616927:135620964:135621201,135602802:135602847:135616830:135616927:135619538:135619588,	135616831	135616927	135616922	135616922	Frame_Shift_Del	A	-	p.Q65fs
LIHC	TCGA-G3-A3CJ-01	MAP3K19	ENST00000315513.3,ENST00000392915.1	chr2	135738390:135739088:135740749:135740901:135741245:135741395,	135740750	135740901	135740810	135740810	Frame_Shift_Del	T	-	p.K1122fs
LIHC	TCGA-G3-A3CJ-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135744281	135744281	Frame_Shift_Del	T	-	p.T721fs
LIHC	TCGA-G3-A3CJ-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135744786	135744786	Frame_Shift_Del	A	-	p.F552fs
LIHC	TCGA-G3-A3CJ-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135745522	135745522	Frame_Shift_Del	T	-	p.N307fs
LIHC	TCGA-G3-A3CJ-01	ZRANB3	ENST00000264159.6	chr2	136148371:136148390:136261898:136262066:136288095:136288146,136148371:136148390:136261898:136262066:136288696:136288769,	136261899	136262066	136261974	136261974	Frame_Shift_Del	A	-	p.L29fs
LIHC	TCGA-G3-A3CJ-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1	chr2	136402948:136403097:136409299:136409602:136418839:136418963,	136409300	136409602	136409442	136409442	Frame_Shift_Del	C	-	p.A588fs
LIHC	TCGA-G3-A3CJ-01	R3HDM1	ENST00000264160.4,ENST00000329971.3	chr2	136402948:136403097:136409302:136409602:136418839:136418963,	136409303	136409602	136409442	136409442	Frame_Shift_Del	C	-	p.A588fs
LIHC	TCGA-G3-A3CJ-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000445855.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136432967:136433056:136437742:136437894:136467002:136467106,	136437743	136437894	136437805	136437805	Frame_Shift_Del	C	-	p.F755fs
LIHC	TCGA-G3-A3CJ-01	MCM6	ENST00000264156.2	chr2	136610356:136610485:136614297:136614453:136615466:136615574,	136614298	136614453	136614425	136614425	Frame_Shift_Del	A	-	p.L500fs
LIHC	TCGA-G3-A3CJ-01	DARS	ENST00000449218.1	chr2	136736877:136736936:136740966:136741024:136742972:136743062,136736843:136736936:136740966:136741024:136743363:136743467,	136740967	136741024	136740994	136740994	Frame_Shift_Del	A	-	p.S33fs
LIHC	TCGA-G3-A3CJ-01	SPOPL	ENST00000280098.4	chr2	139308543:139308624:139310123:139310251:139316591:139316769,	139310124	139310251	139310171	139310171	Frame_Shift_Del	A	-	p.K135fs
LIHC	TCGA-G3-A3CJ-01	GTDC1	ENST00000392871.2	chr2	144714761:144714906:144728219:144728329:144764748:144765102,144714761:144714906:144728219:144728329:144899448:144899622,144710339:144710410:144728219:144728329:144764748:144765102,	144728220	144728329	144728299	144728299	Frame_Shift_Del	A	-	p.F302fs
LIHC	TCGA-G3-A3CJ-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156725	145156725	Frame_Shift_Del	T	-	p.I677fs
LIHC	TCGA-G3-A3CJ-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148657312:148657467:148672759:148672903:148674851:148674995,	148672760	148672903	148672805	148672805	Frame_Shift_Del	C	-	p.L192fs
LIHC	TCGA-G3-A3CJ-01	ORC4	ENST00000535373.1,ENST00000536575.1,ENST00000264169.2,ENST00000392857.5,ENST00000542387.1,ENST00000540442.1,ENST00000392858.1	chr2	148692855:148693267:148695714:148695782:148695866:148695962,	148695715	148695782	148695730	148695730	Frame_Shift_Del	T	-	p.K369fs
LIHC	TCGA-G3-A3CJ-01	ORC4	ENST00000535373.1,ENST00000495601.1,ENST00000457954.1,ENST00000416719.1,ENST00000440042.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000490200.1,ENST00000392858.1	chr2	148716359:148716435:148730307:148730398:148731016:148731093,	148730308	148730398	148730313	148730313	Frame_Shift_Del	T	-	p.T74fs
LIHC	TCGA-G3-A3CJ-01	ORC4	ENST00000535373.1,ENST00000495601.1,ENST00000457954.1,ENST00000416719.1,ENST00000440042.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000490200.1,ENST00000392858.1	chr2	148716359:148716435:148730307:148730398:148731016:148731093,	148730308	148730398	148730376	148730376	Frame_Shift_Del	T	-	p.R53fs
LIHC	TCGA-G3-A3CJ-01	MBD5	ENST00000404807.1,ENST00000496893.1,ENST00000407073.1	chr2	149243310:149243519:149246954:149248163:149260004:149260078,	149246955	149248163	149247480	149247480	Frame_Shift_Del	A	-	p.K1195fs
LIHC	TCGA-G3-A3CJ-01	NMI	ENST00000491771.1	chr2	152135341:152135504:152139381:152139468:152146106:152146377,	152139382	152139468	152139425	152139425	Frame_Shift_Del	T	-	p.K13fs
LIHC	TCGA-G3-A3CJ-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152276738:152276893:152279463:152279556:152285297:152285436,	152279464	152279556	152279542	152279542	Frame_Shift_Del	A	-	p.K258fs
LIHC	TCGA-G3-A3CJ-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321113	152321113	Frame_Shift_Del	T	-	p.S1693fs
LIHC	TCGA-G3-A3CJ-01	NEB	ENST00000424585.1	chr2	152352818:152352882:152353454:152353547:152359306:152359399,	152353455	152353547	152353513	152353513	Frame_Shift_Del	G	-	p.P8112fs
LIHC	TCGA-G3-A3CJ-01	NEB	ENST00000603639.1,ENST00000489048.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000409198.1,ENST00000172853.10	chr2	152551035:152551143:152552091:152552196:152553150:152553249,	152552092	152552196	152552128	152552128	Frame_Shift_Del	A	-	p.F546fs
LIHC	TCGA-G3-A3CJ-01	CACNB4	ENST00000201943.5,ENST00000397327.2,ENST00000534999.1,ENST00000539935.1,ENST00000470066.1,ENST00000434468.1,ENST00000360283.6,ENST00000427385.1,ENST00000439467.1	chr2	152732993:152733070:152737313:152737436:152739764:152739884,	152737314	152737436	152737429	152737429	Frame_Shift_Del	G	-	p.P58fs
LIHC	TCGA-G3-A3CJ-01	FMNL2	ENST00000288670.9	chr2	153437469:153437563:153463852:153463927:153468008:153468119,	153463853	153463927	153463863	153463863	Frame_Shift_Del	A	-	p.E296fs
LIHC	TCGA-G3-A3CJ-01	FMNL2	ENST00000288670.9	chr2	153476091:153476232:153481951:153482076:153483038:153483218,	153481952	153482076	153482023	153482023	Frame_Shift_Del	A	-	p.N637fs
LIHC	TCGA-G3-A3CJ-01	PRPF40A	ENST00000471167.1,ENST00000410080.1	chr2	153515461:153515523:153515606:153515703:153515783:153515870,	153515607	153515703	153515661	153515661	Frame_Shift_Del	T	-	p.R818fs
LIHC	TCGA-G3-A3CJ-01	PRPF40A	ENST00000545856.1,ENST00000410080.1,ENST00000354363.6	chr2	153530111:153530220:153532918:153533293:153533964:153533989,	153532919	153533293	153533252	153533252	Frame_Shift_Del	G	-	p.P233fs
LIHC	TCGA-G3-A3CJ-01	GALNT5	ENST00000259056.4	chr2	158152905:158153025:158156059:158156177:158157187:158157511,	158156060	158156177	158156085	158156085	Frame_Shift_Del	T	-	p.F675fs
LIHC	TCGA-G3-A3CJ-01	CCDC148	ENST00000409187.1,ENST00000283233.5,ENST00000536771.1,ENST00000409889.1,ENST00000417066.1,ENST00000451554.1	chr2	159195501:159195597:159196753:159196905:159197109:159197192,	159196754	159196905	159196866	159196866	Frame_Shift_Del	T	-	p.N125fs
LIHC	TCGA-G3-A3CJ-01	CCDC148	ENST00000409187.1,ENST00000283233.5,ENST00000409889.1	chr2	159197109:159197192:159201726:159201830:159312926:159313078,159197109:159197192:159201726:159201830:159214960:159215082,	159201727	159201830	159201788	159201788	Frame_Shift_Del	T	-	p.T64fs
LIHC	TCGA-G3-A3CJ-01	PKP4	ENST00000480171.3,ENST00000389757.3,ENST00000389759.3,ENST00000426248.3	chr2	159522924:159523075:159526231:159526427:159530188:159530273,	159526232	159526427	159526281	159526281	Frame_Shift_Del	C	-	p.G926fs
LIHC	TCGA-G3-A3CJ-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160255339:160255405:160257109:160257175:160261359:160261421,	160257110	160257175	160257169	160257169	Frame_Shift_Del	T	-	p.I947fs
LIHC	TCGA-G3-A3CJ-01	BAZ2B	ENST00000343439.5,ENST00000441143.1,ENST00000392783.2,ENST00000472953.1	chr2	160268942:160269056:160284451:160284553:160284821:160284930,	160284452	160284553	160284493	160284493	Frame_Shift_Del	T	-	p.I809fs
LIHC	TCGA-G3-A3CJ-01	BAZ2B	ENST00000437839.1,ENST00000355831.2,ENST00000392783.2	chr2	160304752:160304914:160310123:160310312:160335085:160335232,160304826:160304920:160310123:160310312:160335085:160335232,	160310124	160310312	160310203	160310203	Frame_Shift_Del	C	-	p.G85fs
LIHC	TCGA-G3-A3CJ-01	MARCH7	ENST00000259050.4,ENST00000409175.1	chr2	160585519:160585686:160599571:160599764:160604315:160604624,160585519:160585686:160599571:160599764:160602280:160602448,	160599572	160599764	160599685	160599685	Frame_Shift_Del	A	-	p.S89fs
LIHC	TCGA-G3-A3CJ-01	MARCH7	ENST00000259050.4,ENST00000409175.1	chr2	160585519:160585686:160599571:160599764:160604315:160604624,160585519:160585686:160599571:160599764:160602280:160602448,	160599572	160599764	160599733	160599733	Frame_Shift_Del	A	-	p.R105fs
LIHC	TCGA-G3-A3CJ-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604359	160604359	Frame_Shift_Del	A	-	p.P186fs
LIHC	TCGA-G3-A3CJ-01	TANK	ENST00000392749.2,ENST00000259075.2	chr2	162081141:162081257:162087481:162088062:162091852:162091892,	162087482	162088062	162087906	162087906	Frame_Shift_Del	A	-	p.V315fs
LIHC	TCGA-G3-A3CJ-01	FAP	ENST00000450031.2,ENST00000447386.1,ENST00000188790.4,ENST00000443424.1	chr2	163081992:163082087:163083032:163083131:163099417:163099502,	163083033	163083131	163083113	163083113	Frame_Shift_Del	T	-	p.N37fs
LIHC	TCGA-G3-A3CJ-01	IFIH1	ENST00000263642.2	chr2	163134714:163134838:163136505:163136622:163137837:163138055,	163136506	163136622	163136558	163136558	Frame_Shift_Del	T	-	p.N530fs
LIHC	TCGA-G3-A3CJ-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000263915.3	chr2	165349332:165349692:165350940:165351034:165353517:165353562,	165350941	165351034	165351001	165351001	Frame_Shift_Del	G	-	p.P472fs
LIHC	TCGA-G3-A3CJ-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551602	165551602	Frame_Shift_Del	T	-	p.K767fs
LIHC	TCGA-G3-A3CJ-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551602	165551602	Frame_Shift_Del	T	-	p.K767fs
LIHC	TCGA-G3-A3CJ-01	COBLL1	ENST00000342193.4,ENST00000456171.1,ENST00000194871.6,ENST00000375458.2,ENST00000392717.2,ENST00000409184.3,ENST00000493868.1	chr2	165561461:165561615:165578584:165578821:165578934:165579001,	165578585	165578821	165578771	165578771	Frame_Shift_Del	A	-	p.F270fs
LIHC	TCGA-G3-A3CJ-01	SCN3A	ENST00000360093.3,ENST00000440431.2,ENST00000283254.7,ENST00000409101.3	chr2	165970325:165970480:165971964:165972085:165984140:165984302,	165971965	165972085	165971972	165971972	Frame_Shift_Del	A	-	p.F1169fs
LIHC	TCGA-G3-A3CJ-01	SCN2A	ENST00000375427.2,ENST00000283256.6,ENST00000375437.2,ENST00000480032.1,ENST00000357398.3	chr2	166187839:166188078:166198805:166198979:166201064:166201421,	166198806	166198979	166198946	166198946	Frame_Shift_Del	G	-	p.V843fs
LIHC	TCGA-G3-A3CJ-01	TTC21B	ENST00000392695.2,ENST00000536175.1,ENST00000243344.7	chr2	166740303:166740528:166744788:166744984:166746988:166747150,	166744789	166744984	166744868	166744868	Frame_Shift_Del	T	-	p.N1127fs
LIHC	TCGA-G3-A3CJ-01	TTC21B	ENST00000243344.7	chr2	166764187:166764294:166767836:166767975:166769023:166769134,	166767837	166767975	166767868	166767868	Frame_Shift_Del	T	-	p.K810fs
LIHC	TCGA-G3-A3CJ-01	TTC21B	ENST00000243344.7	chr2	166771710:166771949:166773766:166773991:166775785:166775943,	166773767	166773991	166773940	166773940	Frame_Shift_Del	T	-	p.M576fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099536	168099536	Frame_Shift_Del	T	-	p.V545fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099815	168099815	Frame_Shift_Del	A	-	p.E638fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102795	168102795	Frame_Shift_Del	A	-	p.G1631fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104066	168104066	Frame_Shift_Del	T	-	p.V2055fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105263	168105263	Frame_Shift_Del	A	-	p.E2454fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107031	168107031	Frame_Shift_Del	A	-	p.G3043fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168107485	168107485	Frame_Shift_Del	G	-	p.G3195fs
LIHC	TCGA-G3-A3CJ-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168108098	168108098	Frame_Shift_Del	A	-	p.E3399fs
LIHC	TCGA-G3-A3CJ-01	CERS6	ENST00000305747.6	chr2	169574381:169574488:169622101:169622258:169626019:169631644,	169622102	169622258	169622226	169622226	Frame_Shift_Del	A	-	p.K324fs
LIHC	TCGA-G3-A3CJ-01	NOSTRIN	ENST00000397206.2,ENST00000444448.2,ENST00000458381.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169707788:169707914:169711861:169711970:169713199:169713288,	169711862	169711970	169711947	169711947	Frame_Shift_Del	A	-	p.E371fs
LIHC	TCGA-G3-A3CJ-01	LRP2	ENST00000263816.3	chr2	169985522:169985594:169989083:169989191:169993901:169994003,	169989084	169989191	169989110	169989110	Frame_Shift_Del	T	-	p.T4568fs
LIHC	TCGA-G3-A3CJ-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127436	170127436	Frame_Shift_Del	A	-	p.F766fs
LIHC	TCGA-G3-A3CJ-01	BBS5	ENST00000295240.3,ENST00000554017.1	chr2	170350250:170350346:170354136:170354199:170355995:170356130,	170354137	170354199	170354164	170354164	Frame_Shift_Del	T	-	p.F216fs
LIHC	TCGA-G3-A3CJ-01	FASTKD1	ENST00000453153.2	chr2	170393740:170393850:170396560:170396689:170401230:170401345,170394522:170394651:170396560:170396689:170401230:170401345,	170396561	170396689	170396601	170396601	Frame_Shift_Del	A	-	p.F635fs
LIHC	TCGA-G3-A3CJ-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170413696:170413807:170416896:170417295:170419734:170419860,	170416897	170417295	170417171	170417171	Frame_Shift_Del	T	-	p.S233fs
LIHC	TCGA-G3-A3CJ-01	FASTKD1	ENST00000453929.2,ENST00000453153.2	chr2	170413696:170413807:170416896:170417295:170419734:170419860,	170416897	170417295	170417208	170417208	Frame_Shift_Del	A	-	p.F220fs
LIHC	TCGA-G3-A3CJ-01	CCDC173	ENST00000447353.1	chr2	170505691:170505856:170506838:170507031:170510584:170510724,	170506839	170507031	170506907	170506907	Frame_Shift_Del	T	-	p.R362fs
LIHC	TCGA-G3-A3CJ-01	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170592229	170592229	Frame_Shift_Del	A	-	p.L235fs
LIHC	TCGA-G3-A3CJ-01	METTL5	ENST00000392640.2,ENST00000409965.1,ENST00000260953.5,ENST00000410097.1,ENST00000409837.1	chr2	170668979:170669016:170677601:170677783:170678452:170678567,170676070:170676153:170677601:170677783:170678452:170678567,	170677602	170677783	170677618	170677618	Frame_Shift_Del	C	-	p.G130fs
LIHC	TCGA-G3-A3CJ-01	MYO3B	ENST00000442690.1,ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2,ENST00000602629.1	chr2	171055761:171055901:171056659:171056794:171070888:171070993,	171056660	171056794	171056732	171056732	Frame_Shift_Del	T	-	p.F96fs
LIHC	TCGA-G3-A3CJ-01	MYO3B	ENST00000442690.1,ENST00000408978.4,ENST00000334231.6,ENST00000438642.2,ENST00000409044.3,ENST00000317935.6,ENST00000484338.2,ENST00000409940.2	chr2	171092500:171092646:171191894:171191960:171225731:171225887,	171191895	171191960	171191924	171191924	Frame_Shift_Del	A	-	p.E269fs
LIHC	TCGA-G3-A3CJ-01	GORASP2	ENST00000452526.2,ENST00000442798.1,ENST00000234160.4,ENST00000486498.1	chr2	171811159:171811292:171812945:171813069:171818172:171818259,	171812946	171813069	171813022	171813022	Frame_Shift_Del	T	-	p.L259fs
LIHC	TCGA-G3-A3CJ-01	TLK1	ENST00000521943.1,ENST00000442919.2,ENST00000409443.2,ENST00000360843.3,ENST00000359766.3,ENST00000434911.2,ENST00000431350.2	chr2	171862983:171863153:171863309:171863399:171863481:171863573,	171863310	171863399	171863342	171863342	Frame_Shift_Del	T	-	p.K474fs
LIHC	TCGA-G3-A3CJ-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195727	172195727	Frame_Shift_Del	A	-	p.F191fs
LIHC	TCGA-G3-A3CJ-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195897	172195897	Frame_Shift_Del	T	-	p.T135fs
LIHC	TCGA-G3-A3CJ-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195998	172195998	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-G3-A3CJ-01	METTL8	ENST00000375258.4,ENST00000453846.1,ENST00000442778.1,ENST00000442541.1,ENST00000392599.2,ENST00000392604.2	chr2	172196050:172196064:172216931:172217023:172291183:172291290,172196050:172196064:172216931:172217023:172271112:172271236,172196050:172196064:172216931:172217023:172248552:172248707,	172216932	172217023	172216969	172216969	Frame_Shift_Del	T	-	p.K66fs
LIHC	TCGA-G3-A3CJ-01	SLC25A12	ENST00000422440.2,ENST00000263812.4,ENST00000392592.4	chr2	172644298:172644457:172647960:172648099:172650136:172650277,	172647961	172648099	172648008	172648008	Frame_Shift_Del	T	-	p.N513fs
LIHC	TCGA-G3-A3CJ-01	SLC25A12	ENST00000422440.2,ENST00000263812.4,ENST00000392592.4	chr2	172666733:172666786:172669848:172670007:172671630:172671712,	172669849	172670007	172669908	172669908	Frame_Shift_Del	T	-	p.N371fs
LIHC	TCGA-G3-A3CJ-01	METAP1D	ENST00000315796.4	chr2	172943942:172943990:172944855:172944934:172945055:172947158,	172944856	172944934	172944877	172944877	Frame_Shift_Del	C	-	p.S291fs
LIHC	TCGA-G3-A3CJ-01	ITGA6	ENST00000375221.2,ENST00000442250.1,ENST00000264106.6	chr2	173333852:173334108:173337501:173337618:173338782:173338840,173335701:173335833:173337501:173337618:173338782:173338840,	173337502	173337618	173337510	173337510	Frame_Shift_Del	T	-	p.F262fs
LIHC	TCGA-G3-A3CJ-01	RAPGEF4	ENST00000540783.1,ENST00000473003.1,ENST00000409036.1,ENST00000397081.3,ENST00000539331.1,ENST00000397087.3	chr2	173787008:173787028:173825487:173825541:173825849:173825956,	173825488	173825541	173825537	173825537	Frame_Shift_Del	C	-	p.T195fs
LIHC	TCGA-G3-A3CJ-01	RAPGEF4	ENST00000538974.1,ENST00000540783.1,ENST00000397085.3,ENST00000397081.3,ENST00000535187.1,ENST00000539331.1,ENST00000264111.6,ENST00000397087.3	chr2	173891808:173891987:173894891:173894982:173898641:173898692,	173894892	173894982	173894920	173894920	Frame_Shift_Del	T	-	p.F863fs
LIHC	TCGA-G3-A3CJ-01	CDCA7	ENST00000410019.3,ENST00000347703.3,ENST00000410101.3,ENST00000496441.1,ENST00000306721.3	chr2	174230179:174230320:174231010:174231160:174231877:174232014,	174231011	174231160	174231106	174231106	Frame_Shift_Del	C	-	p.G377fs
LIHC	TCGA-G3-A3CJ-01	CDCA7	ENST00000410019.3,ENST00000347703.3,ENST00000410101.3,ENST00000496441.1,ENST00000306721.3	chr2	174231010:174231160:174231877:174232014:174232361:174232448,	174231878	174232014	174231953	174231953	Frame_Shift_Del	G	-	p.G421fs
LIHC	TCGA-G3-A3CJ-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174820131	174820131	Frame_Shift_Del	C	-	p.G370fs
LIHC	TCGA-G3-A3CJ-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174820653	174820653	Frame_Shift_Del	C	-	p.G196fs
LIHC	TCGA-G3-A3CJ-01	WIPF1	ENST00000392546.2,ENST00000359761.3,ENST00000392547.2,ENST00000409891.1,ENST00000272746.5	chr2	175431804:175431911:175432588:175432801:175436403:175437174,	175432589	175432801	175432735	175432735	Frame_Shift_Del	G	-	p.P399fs
LIHC	TCGA-G3-A3CJ-01	WIPF1	ENST00000392546.2,ENST00000359761.3,ENST00000392547.2,ENST00000409891.1,ENST00000272746.5	chr2	175431804:175431911:175432588:175432801:175436403:175437174,	175432589	175432801	175432748	175432748	Frame_Shift_Del	G	-	p.L395fs
LIHC	TCGA-G3-A3CJ-01	CHRNA1	ENST00000409542.1,ENST00000348749.5,ENST00000261007.5,ENST00000435083.1	chr2	175612537:175612983:175613307:175613547:175614673:175614897,	175613308	175613547	175613380	175613380	Frame_Shift_Del	G	-	p.P390fs
LIHC	TCGA-G3-A3CJ-01	CHRNA1	ENST00000409542.1,ENST00000348749.5,ENST00000261007.5,ENST00000435083.1	chr2	175612537:175612983:175613307:175613547:175614673:175614897,	175613308	175613547	175613471	175613471	Frame_Shift_Del	T	-	p.K360fs
LIHC	TCGA-G3-A3CJ-01	CHRNA1	ENST00000409542.1,ENST00000348749.5,ENST00000261007.5,ENST00000435083.1	chr2	175612537:175612983:175613307:175613547:175614673:175614897,	175613308	175613547	175613483	175613483	Frame_Shift_Del	T	-	p.K356fs
LIHC	TCGA-G3-A3CJ-01	CHRNA1	ENST00000348749.5,ENST00000409219.1,ENST00000409323.1	chr2	175618946:175619142:175622293:175622403:175624058:175624103,	175622294	175622403	175622346	175622346	Frame_Shift_Del	T	-	p.I98fs
LIHC	TCGA-G3-A3CJ-01	CHN1	ENST00000490654.1,ENST00000409900.3	chr2	175689161:175689246:175742567:175742856:175779785:175779899,175711641:175711685:175742567:175742856:175779785:175779899,	175742568	175742856	175742640	175742640	Frame_Shift_Del	T	-	p.K159fs
LIHC	TCGA-G3-A3CJ-01	MTX2	ENST00000423461.2	chr2	177162576:177162623:177188119:177188192:177191552:177191629,177168968:177169093:177188119:177188192:177191552:177191629,	177188120	177188192	177188123	177188123	Frame_Shift_Del	T	-	p.F37fs
LIHC	TCGA-G3-A3CJ-01	HNRNPA3	ENST00000411529.2,ENST00000392524.2,ENST00000435711.1	chr2	178081253:178081320:178081403:178081499:178081587:178081668,	178081404	178081499	178081487	178081487	Frame_Shift_Del	T	-	p.F221fs
LIHC	TCGA-G3-A3CJ-01	NFE2L2	ENST00000423513.1,ENST00000446151.2,ENST00000397063.4	chr2	178097977:178098067:178098732:178098999:178129259:178129387,178097977:178098067:178098732:178098999:178128130:178128182,	178098733	178098999	178098895	178098895	Frame_Shift_Del	T	-	p.K50fs
LIHC	TCGA-G3-A3CJ-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606488	179606488	Frame_Shift_Del	T	-	p.K3824fs
LIHC	TCGA-G3-A3CJ-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606527	179606527	Frame_Shift_Del	A	-	p.F3811fs
LIHC	TCGA-G3-A3CJ-01	CERKL	ENST00000479558.1,ENST00000494398.1,ENST00000410087.3	chr2	182423378:182423435:182430784:182430848:182438479:182438611,	182430785	182430848	182430832	182430832	Frame_Shift_Del	C	-	p.G210fs
LIHC	TCGA-G3-A3CJ-01	PPP1R1C	ENST00000452904.1,ENST00000409702.1,ENST00000409137.3	chr2	182839945:182839991:182852565:182852626:182926168:182926206,182850748:182850918:182852565:182852626:182926168:182926206,	182852566	182852626	182852619	182852619	Frame_Shift_Del	C	-	p.N45fs
LIHC	TCGA-G3-A3CJ-01	PPP1R1C	ENST00000280295.3	chr2	182850748:182850918:182852544:182852626:182926168:182926206,	182852545	182852626	182852619	182852619	Frame_Shift_Del	C	-	p.N45fs
LIHC	TCGA-G3-A3CJ-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000537515.1,ENST00000459930.1,ENST00000444005.1	chr2	183594574:183594668:183595756:183595834:183597225:183597269,	183595757	183595834	183595815	183595815	Frame_Shift_Del	T	-	p.T262fs
LIHC	TCGA-G3-A3CJ-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183826886:183827006:183829403:183829536:183831943:183832089,	183829404	183829536	183829437	183829437	Frame_Shift_Del	A	-	p.F582fs
LIHC	TCGA-G3-A3CJ-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183826886:183827006:183829403:183829536:183831943:183832089,	183829404	183829536	183829518	183829518	Frame_Shift_Del	A	-	p.F555fs
LIHC	TCGA-G3-A3CJ-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183866680:183866771:183866854:183866997:183867701:183867758,	183866855	183866997	183866871	183866871	Frame_Shift_Del	T	-	p.M172fs
LIHC	TCGA-G3-A3CJ-01	DUSP19	ENST00000354221.4	chr2	183943716:183943887:183948235:183948282:183951767:183951920,	183948236	183948282	183948271	183948271	Frame_Shift_Del	A	-	p.K89fs
LIHC	TCGA-G3-A3CJ-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670858	186670858	Frame_Shift_Del	A	-	p.K5700fs
LIHC	TCGA-G3-A3CJ-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670864	186670864	Frame_Shift_Del	A	-	p.K5700fs
LIHC	TCGA-G3-A3CJ-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186672503	186672503	Frame_Shift_Del	T	-	p.V6246fs
LIHC	TCGA-G3-A3CJ-01	ITGAV	ENST00000460641.1,ENST00000374907.3,ENST00000433736.2,ENST00000261023.3	chr2	187531430:187531510:187531876:187531957:187532397:187532503,	187531877	187531957	187531917	187531917	Frame_Shift_Del	A	-	p.K763fs
LIHC	TCGA-G3-A3CJ-01	ZSWIM2	ENST00000295131.2	chr2	187703685:187703896:187709443:187709484:187712445:187712522,	187709444	187709484	187709469	187709469	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-G3-A3CJ-01	GULP1	ENST00000476422.1,ENST00000409843.1,ENST00000409580.1,ENST00000409609.1,ENST00000359135.3,ENST00000409830.1,ENST00000495745.1	chr2	189393898:189393922:189405907:189406045:189433965:189434082,	189405908	189406045	189405943	189405943	Frame_Shift_Del	T	-	p.S99fs
LIHC	TCGA-G3-A3CJ-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189856212:189856257:189856394:189856448:189856909:189856954,	189856395	189856448	189856404	189856404	Frame_Shift_Del	G	-	p.G303fs
LIHC	TCGA-G3-A3CJ-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189858959:189859058:189859266:189859320:189859449:189859557,	189859267	189859320	189859276	189859276	Frame_Shift_Del	G	-	p.G435fs
LIHC	TCGA-G3-A3CJ-01	COL5A2	ENST00000374866.3	chr2	189918884:189918938:189921698:189921752:189922045:189922153,	189921699	189921752	189921712	189921712	Frame_Shift_Del	T	-	p.N793fs
LIHC	TCGA-G3-A3CJ-01	WDR75	ENST00000436347.1,ENST00000427960.1,ENST00000314761.4	chr2	190320045:190320170:190322036:190322107:190323478:190323598,	190322037	190322107	190322088	190322088	Frame_Shift_Del	A	-	p.K186fs
LIHC	TCGA-G3-A3CJ-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190531028	190531028	Frame_Shift_Del	G	-	p.R57fs
LIHC	TCGA-G3-A3CJ-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2,ENST00000433782.2	chr2	190561026:190561095:190569748:190569950:190571663:190571868,	190569749	190569950	190569839	190569839	Frame_Shift_Del	A	-	p.E600fs
LIHC	TCGA-G3-A3CJ-01	ANKAR	ENST00000441800.1,ENST00000281412.6	chr2	190592581:190592823:190592992:190593146:190602408:190602567,	190592993	190593146	190593036	190593036	Frame_Shift_Del	G	-	p.W974fs
LIHC	TCGA-G3-A3CJ-01	ANKAR	ENST00000438402.2,ENST00000433782.2	chr2	190593078:190593146:190593385:190593547:190602408:190602567,	190593386	190593547	190593509	190593509	Frame_Shift_Del	T	-	p.L1053fs
LIHC	TCGA-G3-A3CJ-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2,ENST00000433782.2	chr2	190602408:190602567:190603290:190603408:190606067:190606177,	190603291	190603408	190603323	190603323	Frame_Shift_Del	G	-	p.M1205fs
LIHC	TCGA-G3-A3CJ-01	ANKAR	ENST00000431575.2,ENST00000441800.1,ENST00000281412.6,ENST00000313581.4,ENST00000520309.1,ENST00000438402.2	chr2	190606067:190606177:190608000:190608200:190609467:190609514,	190608001	190608200	190608160	190608160	Frame_Shift_Del	T	-	p.F1324fs
LIHC	TCGA-G3-A3CJ-01	OSGEPL1	ENST00000264151.5	chr2	190611385:190611894:190615275:190615382:190617378:190617450,	190615276	190615382	190615315	190615315	Frame_Shift_Del	T	-	p.M412fs
LIHC	TCGA-G3-A3CJ-01	OSGEPL1	ENST00000519810.1,ENST00000520350.1,ENST00000264151.5,ENST00000522700.1	chr2	190618641:190618790:190618866:190619071:190619898:190620286,	190618867	190619071	190618938	190618938	Frame_Shift_Del	T	-	p.N248fs
LIHC	TCGA-G3-A3CJ-01	PMS1	ENST00000441310.2,ENST00000432292.3,ENST00000342075.4,ENST00000418224.3,ENST00000409823.3	chr2	190719748:190719854:190728468:190728954:190732524:190732655,	190728469	190728954	190728565	190728565	Frame_Shift_Del	A	-	p.R651fs
LIHC	TCGA-G3-A3CJ-01	PMS1	ENST00000450931.1	chr2	190718964:190719854:190728468:190728700:190738221:190738254,190719748:190719854:190728468:190728700:190732524:190732655,	190728469	190728700	190728565	190728565	Frame_Shift_Del	A	-	p.R651fs
LIHC	TCGA-G3-A3CJ-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191523929	191523929	Frame_Shift_Del	G	-	p.L9fs
LIHC	TCGA-G3-A3CJ-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191524277	191524277	Frame_Shift_Del	A	-	p.L125fs
LIHC	TCGA-G3-A3CJ-01	STAT1	ENST00000409465.1,ENST00000540176.1,ENST00000361099.3	chr2	191839555:191839658:191840537:191840613:191841565:191841648,	191840538	191840613	191840586	191840586	Frame_Shift_Del	G	-	p.P696fs
LIHC	TCGA-G3-A3CJ-01	STAT1	ENST00000452281.1,ENST00000409465.1,ENST00000540176.1,ENST00000361099.3,ENST00000392322.3,ENST00000392323.2	chr2	191855953:191856046:191859786:191859945:191862581:191862733,	191859787	191859945	191859841	191859841	Frame_Shift_Del	T	-	p.N297fs
LIHC	TCGA-G3-A3CJ-01	MYO1B	ENST00000339514.4,ENST00000392318.3	chr2	192110114:192110352:192141612:192141756:192160836:192160952,	192141613	192141756	192141628	192141628	Frame_Shift_Del	A	-	p.K3fs
LIHC	TCGA-G3-A3CJ-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545001	196545001	Frame_Shift_Del	T	-	p.F80fs
LIHC	TCGA-G3-A3CJ-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196545048	196545048	Frame_Shift_Del	A	-	p.R94fs
LIHC	TCGA-G3-A3CJ-01	DNAH7	ENST00000312428.6	chr2	196651733:196651895:196659061:196659262:196661299:196661461,	196659062	196659262	196659143	196659143	Frame_Shift_Del	T	-	p.K3545fs
LIHC	TCGA-G3-A3CJ-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749321	196749321	Frame_Shift_Del	T	-	p.Q1917fs
LIHC	TCGA-G3-A3CJ-01	DNAH7	ENST00000312428.6	chr2	196746518:196746716:196749308:196749533:196750864:196750996,	196749309	196749533	196749342	196749342	Frame_Shift_Del	T	-	p.K1910fs
LIHC	TCGA-G3-A3CJ-01	DNAH7	ENST00000312428.6	chr2	196851789:196851917:196852680:196852953:196865427:196865607,	196852681	196852953	196852806	196852806	Frame_Shift_Del	T	-	p.I501fs
LIHC	TCGA-G3-A3CJ-01	STK17B	ENST00000263955.4,ENST00000409228.1	chr2	197010634:197010779:197021162:197021375:197027985:197028151,	197021163	197021375	197021224	197021224	Frame_Shift_Del	G	-	p.R92fs
LIHC	TCGA-G3-A3CJ-01	STK17B	ENST00000263955.4,ENST00000409228.1	chr2	197010634:197010779:197021162:197021375:197027985:197028151,	197021163	197021375	197021309	197021309	Frame_Shift_Del	A	-	p.F63fs
LIHC	TCGA-G3-A3CJ-01	CCDC150	ENST00000389175.4,ENST00000471546.1	chr2	197504438:197504502:197511064:197511228:197521356:197521577,	197511065	197511228	197511075	197511075	Frame_Shift_Del	A	-	p.E8fs
LIHC	TCGA-G3-A3CJ-01	CCDC150	ENST00000389175.4,ENST00000431807.2,ENST00000272831.7	chr2	197541277:197541455:197542016:197542085:197559769:197559794,	197542017	197542085	197542077	197542077	Frame_Shift_Del	A	-	p.K501fs
LIHC	TCGA-G3-A3CJ-01	PGAP1	ENST00000470179.1,ENST00000354764.4,ENST00000423035.1	chr2	197706062:197706096:197707444:197707549:197708611:197708799,	197707445	197707549	197707498	197707498	Frame_Shift_Del	A	-	p.L859fs
LIHC	TCGA-G3-A3CJ-01	PGAP1	ENST00000470179.1,ENST00000354764.4,ENST00000423035.1	chr2	197709247:197709298:197710605:197710741:197711726:197711924,	197710606	197710741	197710688	197710688	Frame_Shift_Del	A	-	p.L735fs
LIHC	TCGA-G3-A3CJ-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000263960.2	chr2	198318216:198318388:198327262:198327455:198334793:198334895,198324655:198324805:198327262:198327455:198334793:198334895,	198327263	198327455	198327317	198327317	Frame_Shift_Del	T	-	p.H103fs
LIHC	TCGA-G3-A3CJ-01	COQ10B	ENST00000545340.1,ENST00000409010.1,ENST00000409398.1,ENST00000263960.2	chr2	198327262:198327455:198334793:198334895:198338480:198338892,	198334794	198334895	198334889	198334889	Frame_Shift_Del	T	-	p.D181fs
LIHC	TCGA-G3-A3CJ-01	HSPD1	ENST00000486181.1,ENST00000388968.3,ENST00000452200.1,ENST00000345042.2,ENST00000430176.1,ENST00000440114.1	chr2	198359386:198359476:198360017:198360100:198361863:198362116,	198360018	198360100	198360058	198360058	Frame_Shift_Del	T	-	p.K157fs
LIHC	TCGA-G3-A3CJ-01	PLCL1	ENST00000487695.2,ENST00000435320.1,ENST00000437704.2,ENST00000428675.1	chr2	198966008:198966084:198968550:198968660:199011503:199011658,	198968551	198968660	198968643	198968643	Frame_Shift_Del	A	-	p.N1030fs
LIHC	TCGA-G3-A3CJ-01	AOX1	ENST00000374700.2	chr2	201470258:201470351:201473706:201473858:201474043:201474137,	201473707	201473858	201473752	201473752	Frame_Shift_Del	T	-	p.I318fs
LIHC	TCGA-G3-A3CJ-01	CLK1	ENST00000409403.2	chr2	201719338:201719418:201721404:201721534:201721613:201721708,	201721405	201721534	201721484	201721484	Frame_Shift_Del	A	-	p.F368fs
LIHC	TCGA-G3-A3CJ-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000461981.1,ENST00000473565.1,ENST00000409403.2	chr2	201722440:201722607:201722695:201722812:201724402:201724469,	201722696	201722812	201722810	201722810	Frame_Shift_Del	C	-	p.G227fs
LIHC	TCGA-G3-A3CJ-01	CLK1	ENST00000432425.1,ENST00000473565.1,ENST00000409403.2	chr2	201725960:201726189:201726424:201726585:201729286:201729379,	201726425	201726585	201726498	201726498	Frame_Shift_Del	T	-	p.R73fs
LIHC	TCGA-G3-A3CJ-01	NIF3L1	ENST00000409588.1	chr2	201759986:201760113:201764107:201764191:201768216:201768619,	201764108	201764191	201764163	201764163	Frame_Shift_Del	G	-	p.Q307fs
LIHC	TCGA-G3-A3CJ-01	CFLAR	ENST00000309955.3,ENST00000341582.6,ENST00000423241.2,ENST00000474842.1,ENST00000443227.1	chr2	202014476:202014558:202025154:202025665:202027718:202027803,202014476:202014558:202025154:202025665:202028557:202028696,	202025155	202025665	202025349	202025349	Frame_Shift_Del	G	-	p.G330fs
LIHC	TCGA-G3-A3CJ-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050504	202050504	Frame_Shift_Del	A	-	p.K2fs
LIHC	TCGA-G3-A3CJ-01	CASP10	ENST00000360132.3,ENST00000460140.1,ENST00000313728.7,ENST00000448480.1,ENST00000374650.3,ENST00000471191.1,ENST00000492363.1,ENST00000346817.5,ENST00000286186.6,ENST00000272879.5	chr2	202052468:202052522:202057706:202057842:202060564:202060671,	202057707	202057842	202057807	202057807	Frame_Shift_Del	T	-	p.L182fs
LIHC	TCGA-G3-A3CJ-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131204	202131204	Frame_Shift_Del	A	-	p.K59fs
LIHC	TCGA-G3-A3CJ-01	CASP8	ENST00000323492.7	chr2	202098738:202098835:202131183:202131514:202136238:202136282,202122841:202122877:202131183:202131514:202136238:202136282,202123046:202123105:202131183:202131514:202136238:202136282,202125222:202125336:202131183:202131514:202136238:202136282,	202131184	202131514	202131240	202131240	Frame_Shift_Del	G	-	p.G70fs
LIHC	TCGA-G3-A3CJ-01	CASP8	ENST00000437283.1	chr2	202098738:202098835:202131209:202131514:202136238:202136282,202123046:202123105:202131209:202131514:202136238:202136282,	202131210	202131514	202131240	202131240	Frame_Shift_Del	G	-	p.G70fs
LIHC	TCGA-G3-A3CJ-01	CASP8	ENST00000339403.6	chr2	202139611:202139676:202141549:202141827:202149538:202150040,	202141550	202141827	202141580	202141580	Frame_Shift_Del	A	-	p.K290fs
LIHC	TCGA-G3-A3CJ-01	CASP8	ENST00000432109.2,ENST00000323492.7,ENST00000358485.4,ENST00000264275.5,ENST00000392263.2	chr2	202137620:202137665:202141549:202141691:202149538:202150040,202137360:202137499:202141549:202141691:202149538:202149673,202139611:202139676:202141549:202141691:202149538:202150040,	202141550	202141691	202141580	202141580	Frame_Shift_Del	A	-	p.K290fs
LIHC	TCGA-G3-A3CJ-01	TRAK2	ENST00000332624.3	chr2	202241929:202245941:202248833:202248939:202250940:202251207,	202248834	202248939	202248895	202248895	Frame_Shift_Del	T	-	p.T670fs
LIHC	TCGA-G3-A3CJ-01	TRAK2	ENST00000332624.3	chr2	202241929:202245941:202248833:202248939:202250940:202251207,	202248834	202248939	202248924	202248924	Frame_Shift_Del	G	-	p.P660fs
LIHC	TCGA-G3-A3CJ-01	TRAK2	ENST00000332624.3	chr2	202254523:202254603:202257631:202257769:202259520:202259595,	202257632	202257769	202257653	202257653	Frame_Shift_Del	T	-	p.Q364fs
LIHC	TCGA-G3-A3CJ-01	NOP58	ENST00000264279.5	chr2	203162567:203162629:203164956:203165090:203167643:203167780,	203164957	203165090	203165009	203165009	Frame_Shift_Del	A	-	p.K442fs
LIHC	TCGA-G3-A3CJ-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203332241:203332412:203378441:203378552:203379610:203379702,	203378442	203378552	203378485	203378485	Frame_Shift_Del	T	-	p.A154fs
LIHC	TCGA-G3-A3CJ-01	CARF	ENST00000320443.8,ENST00000545262.1,ENST00000402905.3,ENST00000545253.1,ENST00000428585.1,ENST00000438828.2,ENST00000414439.1	chr2	203846277:203846408:203846794:203847164:203848228:203848365,	203846795	203847164	203846976	203846976	Frame_Shift_Del	A	-	p.Q624fs
LIHC	TCGA-G3-A3CJ-01	NBEAL1	ENST00000478884.1,ENST00000449802.1,ENST00000497505.1	chr2	203906487:203906579:203914536:203914698:203921149:203921231,	203914537	203914698	203914665	203914665	Frame_Shift_Del	T	-	p.I91fs
LIHC	TCGA-G3-A3CJ-01	NBEAL1	ENST00000449802.1	chr2	204034469:204034574:204036650:204036746:204037451:204037576,	204036651	204036746	204036698	204036698	Frame_Shift_Del	A	-	p.I2021fs
LIHC	TCGA-G3-A3CJ-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204064060:204064170:204066265:204066438:204067409:204067504,	204066266	204066438	204066401	204066401	Frame_Shift_Del	A	-	p.T2429fs
LIHC	TCGA-G3-A3CJ-01	CYP20A1	ENST00000428265.1,ENST00000431118.1	chr2	204103757:204103857:204116689:204116832:204131236:204131404,204110568:204110618:204116689:204116832:204131236:204131404,	204116690	204116832	204116694	204116694	Frame_Shift_Del	C	-	p.D98fs
LIHC	TCGA-G3-A3CJ-01	CYP20A1	ENST00000428265.1,ENST00000431118.1	chr2	204103757:204103857:204116689:204116832:204131236:204131404,204110568:204110618:204116689:204116832:204131236:204131404,	204116690	204116832	204116819	204116819	Frame_Shift_Del	C	-	p.A140fs
LIHC	TCGA-G3-A3CJ-01	CYP20A1	ENST00000356079.4,ENST00000461371.1,ENST00000431118.1	chr2	204116689:204116832:204131236:204131404:204137392:204137471,	204131237	204131404	204131386	204131386	Frame_Shift_Del	C	-	p.F194fs
LIHC	TCGA-G3-A3CJ-01	CYP20A1	ENST00000428265.1,ENST00000449301.1,ENST00000463131.1	chr2	204131236:204131404:204143295:204143411:204144781:204144836,	204143296	204143411	204143342	204143342	Frame_Shift_Del	A	-	p.R242fs
LIHC	TCGA-G3-A3CJ-01	PARD3B	ENST00000358768.2,ENST00000351153.1,ENST00000406610.2	chr2	206265736:206265847:206305093:206305396:206364619:206364755,	206305094	206305396	206305272	206305272	Frame_Shift_Del	C	-	p.P975fs
LIHC	TCGA-G3-A3CJ-01	PARD3B	ENST00000358768.2,ENST00000351153.1,ENST00000406610.2	chr2	206265736:206265847:206305093:206305396:206364619:206364755,	206305094	206305396	206305298	206305298	Frame_Shift_Del	C	-	p.Y982fs
LIHC	TCGA-G3-A3CJ-01	NRP2	ENST00000412873.2,ENST00000540841.1,ENST00000540178.1,ENST00000272849.3,ENST00000357118.4,ENST00000357785.5,ENST00000360409.3	chr2	206617558:206617699:206628397:206628660:206630197:206630294,	206628398	206628660	206628465	206628465	Frame_Shift_Del	C	-	p.S704fs
LIHC	TCGA-G3-A3CJ-01	NDUFS1	ENST00000456284.1	chr2	207013743:207013820:207014503:207014649:207017142:207017234,	207014504	207014649	207014601	207014601	Frame_Shift_Del	T	-	p.R68fs
LIHC	TCGA-G3-A3CJ-01	NDUFS1	ENST00000449699.1,ENST00000454195.1,ENST00000455934.2,ENST00000233190.6	chr2	207013743:207013820:207014541:207014649:207017142:207017234,	207014542	207014649	207014601	207014601	Frame_Shift_Del	T	-	p.R68fs
LIHC	TCGA-G3-A3CJ-01	NDUFS1	ENST00000456284.1	chr2	207013743:207013820:207014503:207014649:207017142:207017234,	207014504	207014649	207014608	207014608	Frame_Shift_Del	A	-	p.Y65fs
LIHC	TCGA-G3-A3CJ-01	NDUFS1	ENST00000449699.1,ENST00000454195.1,ENST00000455934.2,ENST00000233190.6	chr2	207013743:207013820:207014541:207014649:207017142:207017234,	207014542	207014649	207014608	207014608	Frame_Shift_Del	A	-	p.Y65fs
LIHC	TCGA-G3-A3CJ-01	MDH1B	ENST00000374412.3,ENST00000449792.1,ENST00000454776.2	chr2	207613743:207613907:207615657:207615799:207619732:207620229,	207615658	207615799	207615737	207615737	Frame_Shift_Del	T	-	p.T325fs
LIHC	TCGA-G3-A3CJ-01	MDH1B	ENST00000432911.1,ENST00000392214.2,ENST00000471988.1,ENST00000436472.1,ENST00000454776.2	chr2	207621960:207622095:207625624:207625737:207629973:207630010,	207625625	207625737	207625680	207625680	Frame_Shift_Del	T	-	p.K27fs
LIHC	TCGA-G3-A3CJ-01	FASTKD2	ENST00000487777.1	chr2	207630155:207630471:207631367:207632194:207634814:207634918,207630370:207630378:207631367:207632194:207634814:207634918,	207631368	207632194	207631570	207631570	Frame_Shift_Del	A	-	p.P51fs
LIHC	TCGA-G3-A3CJ-01	FASTKD2	ENST00000487777.1	chr2	207630155:207630471:207631367:207632194:207634814:207634918,207630370:207630378:207631367:207632194:207634814:207634918,	207631368	207632194	207632054	207632054	Frame_Shift_Del	T	-	p.F213fs
LIHC	TCGA-G3-A3CJ-01	CCNYL1	ENST00000339882.5,ENST00000452312.1	chr2	208602134:208602170:208606946:208607066:208611770:208611937,	208606947	208607066	208606951	208606951	Frame_Shift_Del	A	-	p.E175fs
LIHC	TCGA-G3-A3CJ-01	CCNYL1	ENST00000339882.5,ENST00000452312.1	chr2	208602134:208602170:208606946:208607066:208611770:208611937,	208606947	208607066	208607020	208607020	Frame_Shift_Del	T	-	p.L198fs
LIHC	TCGA-G3-A3CJ-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208841530	208841530	Frame_Shift_Del	T	-	p.N464fs
LIHC	TCGA-G3-A3CJ-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208841839	208841839	Frame_Shift_Del	T	-	p.N361fs
LIHC	TCGA-G3-A3CJ-01	PLEKHM3	ENST00000389247.4,ENST00000427836.2,ENST00000457206.1	chr2	208811090:208811236:208841374:208842310:208865753:208866681,	208841375	208842310	208841894	208841894	Frame_Shift_Del	T	-	p.T343fs
LIHC	TCGA-G3-A3CJ-01	PIKFYVE	ENST00000392202.3	chr2	209136234:209136415:209138307:209138457:209150449:209150524,	209138308	209138457	209138412	209138412	Frame_Shift_Del	A	-	p.K94fs
LIHC	TCGA-G3-A3CJ-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4,ENST00000452564.1	chr2	209182590:209182665:209184975:209185083:209188865:209189006,	209184976	209185083	209184996	209184996	Frame_Shift_Del	C	-	p.N701fs
LIHC	TCGA-G3-A3CJ-01	PTH2R	ENST00000413482.1,ENST00000272847.2	chr2	209345794:209345889:209353736:209353875:209355363:209355405,	209353737	209353875	209353774	209353774	Frame_Shift_Del	T	-	p.F372fs
LIHC	TCGA-G3-A3CJ-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210558065	210558065	Frame_Shift_Del	C	-	p.P391fs
LIHC	TCGA-G3-A3CJ-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210558065	210558065	Frame_Shift_Del	C	-	p.P391fs
LIHC	TCGA-G3-A3CJ-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210558734	210558734	Frame_Shift_Del	A	-	p.K614fs
LIHC	TCGA-G3-A3CJ-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210558734	210558734	Frame_Shift_Del	A	-	p.K614fs
LIHC	TCGA-G3-A3CJ-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210559053	210559053	Frame_Shift_Del	G	-	p.R720fs
LIHC	TCGA-G3-A3CJ-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210559053	210559053	Frame_Shift_Del	G	-	p.R720fs
LIHC	TCGA-G3-A3CJ-01	RPE	ENST00000354506.6,ENST00000436630.2,ENST00000408981.2,ENST00000454822.1,ENST00000438204.2,ENST00000359429.6,ENST00000429921.1,ENST00000411934.2	chr2	210881230:210881365:210882196:210882283:210884392:210884459,	210882197	210882283	210882226	210882226	Frame_Shift_Del	T	-	p.S169fs
LIHC	TCGA-G3-A3CJ-01	KANSL1L	ENST00000281772.9	chr2	210894526:210894642:210896144:210896270:210905143:210905251,	210896145	210896270	210896169	210896169	Frame_Shift_Del	T	-	p.R711fs
LIHC	TCGA-G3-A3CJ-01	KANSL1L	ENST00000281772.9	chr2	210896144:210896270:210905143:210905251:210908662:210908828,	210905144	210905251	210905212	210905212	Frame_Shift_Del	T	-	p.K654fs
LIHC	TCGA-G3-A3CJ-01	KANSL1L	ENST00000428655.1,ENST00000452086.1,ENST00000418791.1,ENST00000281772.9,ENST00000457374.1	chr2	210940275:210940480:210962809:210962931:210968827:210968919,	210962810	210962931	210962836	210962836	Frame_Shift_Del	T	-	p.K508fs
LIHC	TCGA-G3-A3CJ-01	KANSL1L	ENST00000428655.1,ENST00000452086.1,ENST00000438563.1,ENST00000418791.1,ENST00000281772.9,ENST00000457374.1	chr2	210962809:210962931:210968827:210969025:210993754:210993896,	210968828	210969025	210968940	210968940	Frame_Shift_Del	T	-	p.N439fs
LIHC	TCGA-G3-A3CJ-01	LANCL1	ENST00000450366.2,ENST00000441020.3,ENST00000443314.1,ENST00000431941.2,ENST00000233714.4	chr2	211300110:211300183:211300939:211301116:211302413:211302596,	211300940	211301116	211301100	211301100	Frame_Shift_Del	T	-	p.K297fs
LIHC	TCGA-G3-A3CJ-01	SPAG16	ENST00000272898.7,ENST00000374309.3,ENST00000440779.1,ENST00000331683.5,ENST00000413312.1,ENST00000447990.1,ENST00000406979.2	chr2	214181942:214182080:214204886:214204994:214228799:214228869,214181942:214182080:214204886:214204994:214215251:214215369,	214204887	214204994	214204964	214204964	Frame_Shift_Del	A	-	p.E174fs
LIHC	TCGA-G3-A3CJ-01	FN1	ENST00000443816.1,ENST00000492816.2,ENST00000346544.3,ENST00000432072.2,ENST00000456923.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000480737.1,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216246934:216247048:216248050:216248206:216248742:216248803,	216248051	216248206	216248069	216248069	Frame_Shift_Del	T	-	p.T1678fs
LIHC	TCGA-G3-A3CJ-01	FN1	ENST00000443816.1,ENST00000346544.3,ENST00000432072.2,ENST00000426059.1,ENST00000323926.6,ENST00000356005.4,ENST00000336916.4,ENST00000357867.4,ENST00000357009.2,ENST00000345488.5,ENST00000421182.1,ENST00000359671.1,ENST00000354785.4,ENST00000446046.1	chr2	216284011:216284108:216285395:216285524:216286813:216286966,	216285396	216285524	216285425	216285425	Frame_Shift_Del	C	-	p.G549fs
LIHC	TCGA-G3-A3CJ-01	PECR	ENST00000461330.1,ENST00000265322.7	chr2	216913985:216914096:216916171:216916268:216923617:216923699,	216916172	216916268	216916221	216916221	Frame_Shift_Del	A	-	p.L185fs
LIHC	TCGA-G3-A3CJ-01	SMARCAL1	ENST00000445153.1,ENST00000392128.2,ENST00000357276.4,ENST00000358207.5	chr2	217293498:217293505:217297440:217297591:217300060:217300219,	217297441	217297591	217297526	217297526	Frame_Shift_Del	T	-	p.F474fs
LIHC	TCGA-G3-A3CJ-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218712792	218712792	Frame_Shift_Del	G	-	p.P691fs
LIHC	TCGA-G3-A3CJ-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218713484	218713484	Frame_Shift_Del	G	-	p.Q461fs
LIHC	TCGA-G3-A3CJ-01	RUFY4	ENST00000374155.3	chr2	218937965:218938109:218938538:218938668:218939815:218940443,	218938539	218938668	218938598	218938598	Frame_Shift_Del	C	-	p.A197fs
LIHC	TCGA-G3-A3CJ-01	RUFY4	ENST00000344321.7,ENST00000457754.2,ENST00000441828.2	chr2	218937965:218938109:218938538:218938608:218939815:218940443,	218938539	218938608	218938598	218938598	Frame_Shift_Del	C	-	p.A197fs
LIHC	TCGA-G3-A3CJ-01	AAMP	ENST00000475678.1,ENST00000444053.1,ENST00000422731.1,ENST00000489767.1,ENST00000248450.4,ENST00000420660.1	chr2	219129742:219129897:219130093:219130184:219130301:219130405,	219130094	219130184	219130177	219130177	Frame_Shift_Del	G	-	p.L331fs
LIHC	TCGA-G3-A3CJ-01	AAMP	ENST00000475678.1,ENST00000444053.1,ENST00000489767.1,ENST00000248450.4,ENST00000420660.1,ENST00000447885.1	chr2	219131569:219131709:219132216:219132336:219134104:219134257,	219132217	219132336	219132308	219132308	Frame_Shift_Del	G	-	p.P101fs
LIHC	TCGA-G3-A3CJ-01	TMBIM1	ENST00000437694.2,ENST00000445635.1,ENST00000465082.1,ENST00000258412.3,ENST00000396809.2,ENST00000444881.1	chr2	219141726:219141822:219142088:219142176:219142355:219142393,	219142089	219142176	219142118	219142118	Frame_Shift_Del	A	-	p.S204fs
LIHC	TCGA-G3-A3CJ-01	TMBIM1	ENST00000453776.1,ENST00000444000.1,ENST00000451181.1,ENST00000453281.1,ENST00000396809.2,ENST00000444881.1,ENST00000440422.1	chr2	219144832:219144849:219146662:219146904:219157188:219157226,219144832:219144849:219146662:219146904:219150485:219150657,	219146663	219146904	219146688	219146688	Frame_Shift_Del	G	-	p.P59fs
LIHC	TCGA-G3-A3CJ-01	TMBIM1	ENST00000453776.1,ENST00000444000.1,ENST00000451181.1,ENST00000453281.1,ENST00000396809.2,ENST00000444881.1,ENST00000440422.1	chr2	219144832:219144849:219146662:219146904:219157188:219157226,219144832:219144849:219146662:219146904:219150485:219150657,	219146663	219146904	219146819	219146819	Frame_Shift_Del	G	-	p.L16fs
LIHC	TCGA-G3-A3CJ-01	PNKD	ENST00000273077.4,ENST00000436005.2,ENST00000258362.3	chr2	219206703:219206867:219208222:219208309:219209177:219209293,	219208223	219208309	219208298	219208298	Frame_Shift_Del	T	-	p.L287fs
LIHC	TCGA-G3-A3CJ-01	VIL1	ENST00000248444.5,ENST00000392114.2	chr2	219296579:219296680:219296768:219296906:219297515:219297674,	219296769	219296906	219296795	219296795	Frame_Shift_Del	G	-	p.L410fs
LIHC	TCGA-G3-A3CJ-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219321814:219321884:219324512:219324628:219328028:219328089,	219324513	219324628	219324520	219324520	Frame_Shift_Del	T	-	p.N879fs
LIHC	TCGA-G3-A3CJ-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219350386:219350466:219353026:219353144:219360482:219360673,	219353027	219353144	219353075	219353075	Frame_Shift_Del	T	-	p.K514fs
LIHC	TCGA-G3-A3CJ-01	USP37	ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1	chr2	219350386:219350466:219353026:219353144:219360482:219360673,	219353027	219353144	219353122	219353122	Frame_Shift_Del	T	-	p.R499fs
LIHC	TCGA-G3-A3CJ-01	PLCD4	ENST00000459791.1,ENST00000417849.1,ENST00000432688.1,ENST00000450993.2,ENST00000473443.1	chr2	219494241:219494386:219495372:219495525:219496858:219497035,	219495373	219495525	219495462	219495462	Frame_Shift_Del	G	-	p.L403fs
LIHC	TCGA-G3-A3CJ-01	ZNF142	ENST00000449707.1	chr2	219515223:219515249:219520872:219521186:219523423:219523524,	219520873	219521186	219521067	219521067	Frame_Shift_Del	G	-	p.P30fs
LIHC	TCGA-G3-A3CJ-01	TTLL4	ENST00000491899.1,ENST00000258398.4,ENST00000465558.1,ENST00000467841.1,ENST00000494428.1,ENST00000457313.1,ENST00000480472.1,ENST00000448224.1,ENST00000392102.1	chr2	219611725:219611917:219612012:219612095:219612319:219612448,	219612013	219612095	219612056	219612056	Frame_Shift_Del	G	-	p.W737fs
LIHC	TCGA-G3-A3CJ-01	DNPEP	ENST00000373966.1,ENST00000273075.4,ENST00000373972.1,ENST00000429013.1,ENST00000523282.1,ENST00000373963.1	chr2	220249087:220249165:220250145:220250253:220250352:220250408,	220250146	220250253	220250203	220250203	Frame_Shift_Del	C	-	p.G239fs
LIHC	TCGA-G3-A3CJ-01	DNPEP	ENST00000373966.1,ENST00000273075.4,ENST00000434339.1,ENST00000373972.1,ENST00000429013.1,ENST00000460963.1,ENST00000523282.1,ENST00000457935.1,ENST00000373963.1	chr2	220249087:220249165:220250689:220250820:220251007:220251133,220250380:220250428:220250689:220250820:220251007:220251133,	220250690	220250820	220250710	220250710	Frame_Shift_Del	C	-	p.G190fs
LIHC	TCGA-G3-A3CJ-01	GMPPA	ENST00000358215.3,ENST00000443704.1,ENST00000435316.1,ENST00000313597.5,ENST00000373908.1,ENST00000373917.3,ENST00000341142.3	chr2	220368804:220368935:220369949:220370084:220370179:220370253,	220369950	220370084	220369972	220369972	Frame_Shift_Del	C	-	p.P215fs
LIHC	TCGA-G3-A3CJ-01	TMEM198	ENST00000344458.2,ENST00000373883.3	chr2	220409482:220409615:220412227:220412803:220413873:220414076,	220412228	220412803	220412254	220412254	Frame_Shift_Del	T	-	p.F65fs
LIHC	TCGA-G3-A3CJ-01	OBSL1	ENST00000265318.4,ENST00000404537.1,ENST00000373876.1	chr2	220418295:220418408:220419195:220419462:220420741:220421014,	220419196	220419462	220419408	220419408	Frame_Shift_Del	C	-	p.G1555fs
LIHC	TCGA-G3-A3CJ-01	OBSL1	ENST00000265318.4,ENST00000465149.1,ENST00000603926.1,ENST00000289656.3,ENST00000373873.4,ENST00000404537.1,ENST00000373876.1	chr2	220429963:220430236:220431551:220431848:220431994:220432258,	220431552	220431848	220431795	220431795	Frame_Shift_Del	C	-	p.E631fs
LIHC	TCGA-G3-A3CJ-01	STK11IP	ENST00000295641.10,ENST00000456909.1	chr2	220474084:220474262:220476325:220476556:220476676:220476780,	220476326	220476556	220476386	220476386	Frame_Shift_Del	G	-	p.R722fs
LIHC	TCGA-G3-A3CJ-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220499992:220500218:220500394:220500613:220501023:220501172,	220500395	220500613	220500469	220500469	Frame_Shift_Del	G	-	p.G684fs
LIHC	TCGA-G3-A3CJ-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3,ENST00000416910.1	chr2	220501023:220501172:220501401:220501596:220502302:220502517,	220501402	220501596	220501562	220501562	Frame_Shift_Del	T	-	p.I834fs
LIHC	TCGA-G3-A3CJ-01	EPHA4	ENST00000281821.2,ENST00000409854.1,ENST00000392071.4,ENST00000409938.1	chr2	222291183:222291339:222294677:222294871:222298861:222298969,	222294678	222294871	222294741	222294741	Frame_Shift_Del	T	-	p.N876fs
LIHC	TCGA-G3-A3CJ-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223436463:223436741:223464646:223464802:223478529:223478647,	223464647	223464802	223464670	223464670	Frame_Shift_Del	C	-	p.G532fs
LIHC	TCGA-G3-A3CJ-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223488990:223489198:223489432:223489494:223493555:223493607,	223489433	223489494	223489444	223489444	Frame_Shift_Del	T	-	p.K317fs
LIHC	TCGA-G3-A3CJ-01	FARSB	ENST00000536361.1,ENST00000281828.6	chr2	223504298:223504414:223505580:223505650:223507569:223507626,	223505581	223505650	223505607	223505607	Frame_Shift_Del	T	-	p.I105fs
LIHC	TCGA-G3-A3CJ-01	ACSL3	ENST00000392066.3,ENST00000357430.3	chr2	223789271:223789313:223791734:223791907:223793579:223793654,	223791735	223791907	223791897	223791897	Frame_Shift_Del	A	-	p.T485fs
LIHC	TCGA-G3-A3CJ-01	AP1S3	ENST00000396654.2	chr2	224623198:224623467:224629929:224630067:224640617:224640726,	224629930	224630067	224629983	224629983	Frame_Shift_Del	T	-	p.T126fs
LIHC	TCGA-G3-A3CJ-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225346608:225346795:225360548:225360683:225362469:225362536,	225360549	225360683	225360601	225360601	Frame_Shift_Del	A	-	p.F597fs
LIHC	TCGA-G3-A3CJ-01	DOCK10	ENST00000409592.3,ENST00000258390.7	chr2	225719679:225719759:225721576:225721699:225727380:225727463,	225721577	225721699	225721629	225721629	Frame_Shift_Del	T	-	p.S581fs
LIHC	TCGA-G3-A3CJ-01	COL4A3	ENST00000396578.3	chr2	228144508:228144606:228145155:228145306:228145608:228145722,	228145156	228145306	228145200	228145200	Frame_Shift_Del	T	-	p.G756fs
LIHC	TCGA-G3-A3CJ-01	AGFG1	ENST00000409315.1,ENST00000409171.1,ENST00000310078.8,ENST00000456594.1	chr2	228389477:228389631:228395806:228395926:228398264:228398397,	228395807	228395926	228395848	228395848	Frame_Shift_Del	T	-	p.F246fs
LIHC	TCGA-G3-A3CJ-01	CCL20	ENST00000473642.1,ENST00000358813.4,ENST00000409189.3	chr2	228680172:228680284:228681022:228681100:228681777:228682179,	228681023	228681100	228681073	228681073	Frame_Shift_Del	G	-	p.W80fs
LIHC	TCGA-G3-A3CJ-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661315	230661315	Frame_Shift_Del	A	-	p.S1196fs
LIHC	TCGA-G3-A3CJ-01	TRIP12	ENST00000487178.1,ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230668286:230668405:230668714:230668943:230670445:230670518,	230668715	230668943	230668730	230668730	Frame_Shift_Del	T	-	p.N880fs
LIHC	TCGA-G3-A3CJ-01	TRIP12	ENST00000389044.4,ENST00000409677.1,ENST00000543084.1,ENST00000430954.1	chr2	230724091:230724290:230725121:230725247:230744697:230744844,	230725122	230725247	230725175	230725175	Frame_Shift_Del	G	-	p.P57fs
LIHC	TCGA-G3-A3CJ-01	SLC16A14	ENST00000295190.4	chr2	230899697:230902247:230910460:230911438:230914476:230914620,	230910461	230911438	230910745	230910745	Frame_Shift_Del	C	-	p.G366fs
LIHC	TCGA-G3-A3CJ-01	SP110	ENST00000358662.4,ENST00000540870.1,ENST00000258381.6,ENST00000490880.1,ENST00000258382.5	chr2	231065600:231065681:231067294:231067444:231072705:231072774,	231067295	231067444	231067403	231067403	Frame_Shift_Del	T	-	p.R314fs
LIHC	TCGA-G3-A3CJ-01	SP110	ENST00000392048.3	chr2	231065600:231065681:231067294:231067438:231072705:231072774,	231067295	231067438	231067403	231067403	Frame_Shift_Del	T	-	p.R314fs
LIHC	TCGA-G3-A3CJ-01	SP110	ENST00000358662.4,ENST00000258381.6,ENST00000338556.3,ENST00000258382.5,ENST00000392048.3	chr2	231079676:231079833:231081495:231081643:231084588:231084617,	231081496	231081643	231081541	231081541	Frame_Shift_Del	A	-	p.F34fs
LIHC	TCGA-G3-A3CJ-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231101797:231101975:231102927:231103096:231103475:231103642,231101797:231101975:231102927:231103096:231106118:231106202,	231102928	231103096	231102930	231102930	Frame_Shift_Del	T	-	p.H80fs
LIHC	TCGA-G3-A3CJ-01	SP140	ENST00000486687.2,ENST00000392045.3,ENST00000476126.1,ENST00000350136.5,ENST00000420434.3,ENST00000417495.3,ENST00000343805.6	chr2	231135300:231135354:231149060:231149126:231150466:231150547,	231149061	231149126	231149107	231149107	Frame_Shift_Del	G	-	p.Q515fs
LIHC	TCGA-G3-A3CJ-01	SP100	ENST00000264052.5,ENST00000340126.4,ENST00000409112.1	chr2	231359130:231359175:231363175:231363250:231367780:231367825,	231363176	231363250	231363198	231363198	Frame_Shift_Del	A	-	p.R556fs
LIHC	TCGA-G3-A3CJ-01	CAB39	ENST00000478152.1,ENST00000258418.5,ENST00000410084.3,ENST00000409788.3	chr2	231655612:231655751:231657927:231658046:231663443:231663612,	231657928	231658046	231657931	231657931	Frame_Shift_Del	A	-	p.K96fs
LIHC	TCGA-G3-A3CJ-01	CAB39	ENST00000478152.1,ENST00000258418.5,ENST00000410084.3,ENST00000409788.3	chr2	231655612:231655751:231657927:231658046:231663443:231663612,	231657928	231658046	231657950	231657950	Frame_Shift_Del	T	-	p.I101fs
LIHC	TCGA-G3-A3CJ-01	PSMD1	ENST00000308696.6,ENST00000409643.1,ENST00000373635.4	chr2	231926961:231927035:231927219:231927389:231931619:231931825,	231927220	231927389	231927347	231927347	Frame_Shift_Del	T	-	p.F88fs
LIHC	TCGA-G3-A3CJ-01	PSMD1	ENST00000440838.1	chr2	231926961:231927035:231927219:231927407:231931619:231931825,	231927220	231927407	231927347	231927347	Frame_Shift_Del	T	-	p.F88fs
LIHC	TCGA-G3-A3CJ-01	ARMC9	ENST00000440107.1,ENST00000349938.4,ENST00000482392.1,ENST00000483477.1	chr2	232070951:232071002:232072839:232072965:232079543:232079714,	232072840	232072965	232072884	232072884	Frame_Shift_Del	A	-	p.S32fs
LIHC	TCGA-G3-A3CJ-01	ARMC9	ENST00000481520.1,ENST00000349938.4,ENST00000428662.1,ENST00000483477.1	chr2	232141348:232141488:232143094:232143171:232146771:232146846,	232143095	232143171	232143140	232143140	Frame_Shift_Del	T	-	p.L507fs
LIHC	TCGA-G3-A3CJ-01	DIS3L2	ENST00000360410.4	chr2	232995328:232995429:233001181:233001433:233028172:233028230,	233001182	233001433	233001427	233001427	Frame_Shift_Del	G	-	p.L316fs
LIHC	TCGA-G3-A3CJ-01	DIS3L2	ENST00000433430.1,ENST00000325385.7,ENST00000409307.1,ENST00000390005.5,ENST00000273009.6	chr2	232995328:232995429:233001181:233001429:233028168:233028342,	233001182	233001429	233001427	233001427	Frame_Shift_Del	G	-	p.L316fs
LIHC	TCGA-G3-A3CJ-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000390005.5,ENST00000273009.6	chr2	233001181:233001429:233028168:233028342:233075035:233075115,	233028169	233028342	233028201	233028201	Frame_Shift_Del	A	-	p.E328fs
LIHC	TCGA-G3-A3CJ-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000445090.1,ENST00000498319.2,ENST00000390005.5,ENST00000424049.1	chr2	233114049:233114056:233127916:233128150:233164749:233164829,	233127917	233128150	233128000	233128000	Frame_Shift_Del	C	-	p.S503fs
LIHC	TCGA-G3-A3CJ-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000445090.1,ENST00000498319.2,ENST00000390005.5,ENST00000424049.1	chr2	233114049:233114056:233127916:233128150:233164749:233164829,	233127917	233128150	233128041	233128041	Frame_Shift_Del	C	-	p.S517fs
LIHC	TCGA-G3-A3CJ-01	GIGYF2	ENST00000452341.2,ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233681580:233681742:233684536:233684695:233697566:233697803,	233684537	233684695	233684661	233684661	Frame_Shift_Del	A	-	p.E854fs
LIHC	TCGA-G3-A3CJ-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233697570:233697803:233704558:233704681:233708755:233708906,	233704559	233704681	233704578	233704578	Frame_Shift_Del	G	-	p.W951fs
LIHC	TCGA-G3-A3CJ-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233709078:233709284:233710441:233710596:233712057:233712209,	233710442	233710596	233710524	233710524	Frame_Shift_Del	A	-	p.K1152fs
LIHC	TCGA-G3-A3CJ-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233710441:233710596:233712057:233712281:233714971:233715119,	233712058	233712281	233712192	233712192	Frame_Shift_Del	A	-	p.K1221fs
LIHC	TCGA-G3-A3CJ-01	INPP5D	ENST00000538935.1,ENST00000359570.5,ENST00000415617.1,ENST00000455936.2,ENST00000493632.1,ENST00000465281.1,ENST00000435188.1,ENST00000450745.1,ENST00000445964.1	chr2	234079709:234079798:234085910:234085992:234091055:234091128,	234085911	234085992	234085920	234085920	Frame_Shift_Del	A	-	p.N655fs
LIHC	TCGA-G3-A3CJ-01	INPP5D	ENST00000359570.5,ENST00000415617.1,ENST00000455936.2,ENST00000435188.1,ENST00000450745.1,ENST00000445964.1	chr2	234106740:234107022:234112771:234113363:234115351:234115598,	234112772	234113363	234112809	234112809	Frame_Shift_Del	C	-	p.993fs
LIHC	TCGA-G3-A3CJ-01	INPP5D	ENST00000359570.5,ENST00000415617.1,ENST00000455936.2,ENST00000435188.1,ENST00000450745.1,ENST00000445964.1	chr2	234106740:234107022:234112771:234113363:234115351:234115598,	234112772	234113363	234113147	234113147	Frame_Shift_Del	G	-	p.1105fs
LIHC	TCGA-G3-A3CJ-01	ATG16L1	ENST00000498620.1,ENST00000392020.4,ENST00000492298.1,ENST00000474148.1,ENST00000479942.1,ENST00000392021.3,ENST00000347464.5,ENST00000392018.1,ENST00000392017.4	chr2	234183321:234183424:234186213:234186319:234189750:234189760,	234186214	234186319	234186305	234186305	Frame_Shift_Del	G	-	p.W349fs
LIHC	TCGA-G3-A3CJ-01	DGKD	ENST00000264057.2,ENST00000490764.1,ENST00000474488.1,ENST00000409813.3	chr2	234346022:234346125:234346862:234347025:234350532:234350641,	234346863	234347025	234346875	234346875	Frame_Shift_Del	C	-	p.A312fs
LIHC	TCGA-G3-A3CJ-01	DGKD	ENST00000264057.2,ENST00000490764.1,ENST00000474488.1,ENST00000409813.3	chr2	234346022:234346125:234346862:234347025:234350532:234350641,	234346863	234347025	234346986	234346986	Frame_Shift_Del	C	-	p.A349fs
LIHC	TCGA-G3-A3CJ-01	DGKD	ENST00000430834.1,ENST00000264057.2,ENST00000490764.1,ENST00000409813.3	chr2	234357748:234358022:234358627:234358777:234359567:234359696,	234358628	234358777	234358646	234358646	Frame_Shift_Del	C	-	p.A636fs
LIHC	TCGA-G3-A3CJ-01	HJURP	ENST00000454020.1,ENST00000411486.2	chr2	234752870:234752929:234754373:234754466:234758408:234758505,234752870:234752929:234754373:234754466:234761210:234761266,234752870:234752929:234754373:234754466:234756042:234756107,	234754374	234754466	234754438	234754438	Frame_Shift_Del	T	-	p.N144fs
LIHC	TCGA-G3-A3CJ-01	TRPM8	ENST00000439148.1	chr2	234890451:234890559:234891696:234891995:234894331:234894439,	234891697	234891995	234891805	234891805	Frame_Shift_Del	T	-	p.F900fs
LIHC	TCGA-G3-A3CJ-01	TRPM8	ENST00000444298.1,ENST00000477103.1,ENST00000324695.4,ENST00000456930.1,ENST00000433712.2	chr2	234890451:234890559:234891696:234891868:234894331:234894439,	234891697	234891868	234891805	234891805	Frame_Shift_Del	T	-	p.F900fs
LIHC	TCGA-G3-A3CJ-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235949994	235949994	Frame_Shift_Del	T	-	p.L194fs
LIHC	TCGA-G3-A3CJ-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235950894	235950894	Frame_Shift_Del	T	-	p.I494fs
LIHC	TCGA-G3-A3CJ-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235951537	235951537	Frame_Shift_Del	G	-	p.Q708fs
LIHC	TCGA-G3-A3CJ-01	IQCA1	ENST00000309507.5,ENST00000418802.1,ENST00000254653.5	chr2	237289255:237289276:237300618:237300714:237300886:237300993,237289211:237289279:237300618:237300714:237300886:237300993,	237300619	237300714	237300626	237300626	Frame_Shift_Del	T	-	p.K469fs
LIHC	TCGA-G3-A3CJ-01	COPS8	ENST00000470452.1,ENST00000409334.1,ENST00000409629.1	chr2	237994585:237994685:237995769:237995840:237997247:237997296,	237995770	237995840	237995817	237995817	Frame_Shift_Del	T	-	p.A42fs
LIHC	TCGA-G3-A3CJ-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238275329:238275929:238277205:238277820:238280374:238280980,	238277206	238277820	238277233	238277233	Frame_Shift_Del	C	-	p.V1625fs
LIHC	TCGA-G3-A3CJ-01	COL6A3	ENST00000353578.4,ENST00000392003.2,ENST00000295550.4,ENST00000409809.1,ENST00000392004.3,ENST00000347401.3	chr2	238285760:238285987:238287278:238287878:238289557:238290142,	238287279	238287878	238287330	238287330	Frame_Shift_Del	G	-	p.L816fs
LIHC	TCGA-G3-A3CJ-01	COL6A3	ENST00000353578.4,ENST00000392003.2,ENST00000295550.4,ENST00000409809.1,ENST00000392004.3,ENST00000347401.3	chr2	238285760:238285987:238287278:238287878:238289557:238290142,	238287279	238287878	238287864	238287864	Frame_Shift_Del	T	-	p.R638fs
LIHC	TCGA-G3-A3CJ-01	COL6A3	ENST00000353578.4,ENST00000409809.1,ENST00000392004.3	chr2	238289557:238290142:238296224:238296827:238303229:238303307,238289779:238290142:238296224:238296827:238305369:238305460,	238296225	238296827	238296393	238296393	Frame_Shift_Del	G	-	p.Q382fs
LIHC	TCGA-G3-A3CJ-01	MLPH	ENST00000478712.1,ENST00000338530.4,ENST00000437893.1,ENST00000264605.3,ENST00000468178.1,ENST00000445024.2,ENST00000432475.1,ENST00000410032.1,ENST00000464123.1	chr2	238449091:238449176:238449444:238449600:238451209:238451302,	238449445	238449600	238449572	238449572	Frame_Shift_Del	C	-	p.A473fs
LIHC	TCGA-G3-A3CJ-01	MLPH	ENST00000434770.1	chr2	238457863:238457921:238460979:238461080:238462331:238462634,	238460980	238461080	238460996	238460996	Frame_Shift_Del	T	-	p.S564fs
LIHC	TCGA-G3-A3CJ-01	LRRFIP1	ENST00000478958.1,ENST00000308482.9,ENST00000464608.1,ENST00000474195.1	chr2	238681508:238681588:238683000:238683105:238688064:238688204,	238683001	238683105	238683091	238683091	Frame_Shift_Del	A	-	p.K600fs
LIHC	TCGA-G3-A3CJ-01	ILKAP	ENST00000457149.1	chr2	239096771:239096898:239098499:239098613:239102915:239102972,	239098500	239098613	239098551	239098551	Frame_Shift_Del	T	-	p.T81fs
LIHC	TCGA-G3-A3CJ-01	ILKAP	ENST00000254654.3	chr2	239096771:239096898:239098493:239098613:239102915:239102972,	239098494	239098613	239098551	239098551	Frame_Shift_Del	T	-	p.T81fs
LIHC	TCGA-G3-A3CJ-01	ILKAP	ENST00000463129.1	chr2	239096771:239096898:239098503:239098613:239102915:239102972,	239098504	239098613	239098551	239098551	Frame_Shift_Del	T	-	p.T81fs
LIHC	TCGA-G3-A3CJ-01	TRAF3IP1	ENST00000391993.3,ENST00000391994.2,ENST00000373327.4	chr2	239237571:239237983:239241464:239241536:239242600:239242676,	239241465	239241536	239241509	239241509	Frame_Shift_Del	T	-	p.T320fs
LIHC	TCGA-G3-A3CJ-01	HDAC4	ENST00000541256.1,ENST00000463007.1,ENST00000535493.1,ENST00000345617.3,ENST00000493582.1	chr2	240061379:240061492:240066278:240066410:240078347:240078469,	240066279	240066410	240066299	240066299	Frame_Shift_Del	T	-	p.K282fs
LIHC	TCGA-G3-A3CJ-01	ANKMY1	ENST00000401804.1,ENST00000272972.3,ENST00000403283.1,ENST00000361678.4,ENST00000373320.4,ENST00000373318.2,ENST00000391987.1,ENST00000406958.1	chr2	241452236:241452359:241459778:241459950:241463301:241463426,	241459779	241459950	241459896	241459896	Frame_Shift_Del	G	-	p.P540fs
LIHC	TCGA-G3-A3CJ-01	ANKMY1	ENST00000405002.1,ENST00000462004.1,ENST00000496300.1,ENST00000464991.1	chr2	241492450:241492474:241494282:241494472:241500147:241500185,	241494283	241494472	241494339	241494339	Frame_Shift_Del	C	-	p.E5fs
LIHC	TCGA-G3-A3CJ-01	SNED1	ENST00000342631.6,ENST00000401884.1,ENST00000310397.8,ENST00000405547.3,ENST00000401644.2,ENST00000431690.1	chr2	241979532:241979605:241979716:241979830:241987731:241987857,	241979717	241979830	241979739	241979739	Frame_Shift_Del	C	-	p.D394fs
LIHC	TCGA-G3-A3CJ-01	SNED1	ENST00000342631.6,ENST00000401884.1,ENST00000310397.8,ENST00000405547.3	chr2	241989233:241989350:241991160:241991277:241991457:241991574,	241991161	241991277	241991170	241991170	Frame_Shift_Del	A	-	p.H582fs
LIHC	TCGA-G3-A3CJ-01	PPP1R7	ENST00000407025.1	chr2	242089052:242089123:242089673:242089962:242092890:242093019,	242089674	242089962	242089916	242089916	Frame_Shift_Del	G	-	p.A3fs
LIHC	TCGA-G3-A3CJ-01	ANO7	ENST00000402430.3,ENST00000274979.8	chr2	242154219:242154317:242155507:242155653:242157100:242157306,	242155508	242155653	242155594	242155594	Frame_Shift_Del	G	-	p.W692fs
LIHC	TCGA-G3-A3CJ-01	HDLBP	ENST00000453141.1	chr2	242194556:242194573:242194788:242194926:242195598:242195814,	242194789	242194926	242194887	242194887	Frame_Shift_Del	A	-	p.S328fs
LIHC	TCGA-G3-A3CJ-01	HDLBP	ENST00000391975.1,ENST00000391976.2,ENST00000310931.4	chr2	242194556:242194573:242194788:242194995:242195598:242195814,	242194789	242194995	242194887	242194887	Frame_Shift_Del	A	-	p.S328fs
LIHC	TCGA-G3-A3CJ-01	FARP2	ENST00000545004.1,ENST00000264042.3,ENST00000373287.4	chr2	242375895:242375953:242380718:242380971:242396161:242396337,	242380719	242380971	242380756	242380756	Frame_Shift_Del	C	-	p.S399fs
LIHC	TCGA-G3-A3CJ-01	FARP2	ENST00000264042.3,ENST00000470617.1	chr2	242432343:242432451:242432707:242432859:242433422:242433534,	242432708	242432859	242432810	242432810	Frame_Shift_Del	A	-	p.K1000fs
LIHC	TCGA-G3-A3CJ-01	FARP2	ENST00000412332.1	chr2	242432807:242432859:242433422:242433556:242433891:242434255,	242433423	242433556	242433458	242433458	Frame_Shift_Del	C	-	p.A1028fs
LIHC	TCGA-G3-A3CJ-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573452	242573452	Frame_Shift_Del	T	-	p.K40fs
LIHC	TCGA-G3-A3CJ-01	D2HGDH	ENST00000400769.2	chr2	242690660:242690803:242695263:242695429:242707124:242707363,242684123:242684292:242695263:242695429:242707124:242707363,	242695264	242695429	242695347	242695347	Frame_Shift_Del	G	-	p.V408fs
LIHC	TCGA-G3-A3CJ-01	ITPR1	ENST00000456211.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000544951.1,ENST00000467056.1,ENST00000354582.6	chr3	4536114:4536190:4558159:4558267:4562707:4562778,	4558160	4558267	4558185	4558185	Frame_Shift_Del	A	-	p.K4fs
LIHC	TCGA-G3-A3CJ-01	EDEM1	ENST00000465369.1,ENST00000445686.1,ENST00000256497.4	chr3	5249777:5249948:5251859:5251933:5252804:5252875,	5251860	5251933	5251925	5251925	Frame_Shift_Del	A	-	p.T525fs
LIHC	TCGA-G3-A3CJ-01	SSUH2	ENST00000420394.1,ENST00000544814.1,ENST00000413305.1,ENST00000435138.1,ENST00000415132.1,ENST00000495366.1,ENST00000455157.2,ENST00000317371.4,ENST00000341795.3	chr3	8665234:8665342:8667227:8667333:8667914:8668007,	8667228	8667333	8667297	8667297	Frame_Shift_Del	C	-	p.R246fs
LIHC	TCGA-G3-A3CJ-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944084	8944084	Frame_Shift_Del	T	-	p.K383fs
LIHC	TCGA-G3-A3CJ-01	SETD5	ENST00000490791.1	chr3	9476017:9476169:9476507:9476566:9477411:9477509,9476273:9476314:9476507:9476566:9477411:9477509,	9476508	9476566	9476519	9476519	Frame_Shift_Del	G	-	p.R3fs
LIHC	TCGA-G3-A3CJ-01	SETD5	ENST00000466242.1,ENST00000413704.1,ENST00000493918.1,ENST00000402198.1,ENST00000302463.6,ENST00000399686.2,ENST00000407969.1,ENST00000402466.1,ENST00000406341.1	chr3	9506108:9506356:9512142:9512613:9514919:9515056,	9512143	9512613	9512172	9512172	Frame_Shift_Del	A	-	p.A820fs
LIHC	TCGA-G3-A3CJ-01	LHFPL4	ENST00000287585.6	chr3	9543480:9543995:9547650:9547887:9593957:9593991,	9547651	9547887	9547813	9547813	Frame_Shift_Del	C	-	p.A161fs
LIHC	TCGA-G3-A3CJ-01	BRPF1	ENST00000457855.1,ENST00000383829.2,ENST00000302054.3,ENST00000424362.1	chr3	9785264:9785585:9785907:9786192:9786691:9786839,	9785908	9786192	9786078	9786078	Frame_Shift_Del	C	-	p.P937fs
LIHC	TCGA-G3-A3CJ-01	OGG1	ENST00000302036.7	chr3	9798154:9798305:9798450:9798500:9807492:9807796,	9798451	9798500	9798456	9798456	Frame_Shift_Del	T	-	p.F303fs
LIHC	TCGA-G3-A3CJ-01	TTLL3	ENST00000427220.1	chr3	9857757:9857886:9859328:9859443:9860238:9860604,	9859329	9859443	9859412	9859412	Frame_Shift_Del	G	-	p.L133fs
LIHC	TCGA-G3-A3CJ-01	RPUSD3	ENST00000424438.1,ENST00000427174.1,ENST00000475470.1,ENST00000418713.1,ENST00000383820.5,ENST00000433535.2	chr3	9882215:9882300:9882381:9882489:9883666:9883766,	9882382	9882489	9882396	9882396	Frame_Shift_Del	G	-	p.P167fs
LIHC	TCGA-G3-A3CJ-01	IL17RE	ENST00000421412.1,ENST00000489181.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3	chr3	9944665:9944748:9945715:9945835:9948047:9948145,9945080:9945096:9945715:9945835:9948047:9948145,	9945716	9945835	9945804	9945804	Frame_Shift_Del	T	-	p.C79fs
LIHC	TCGA-G3-A3CJ-01	IL17RE	ENST00000421412.1,ENST00000489181.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3,ENST00000383815.3,ENST00000434065.1	chr3	9948644:9948784:9949922:9949991:9952548:9952724,9948644:9948784:9949922:9949991:9950900:9950967,	9949923	9949991	9949935	9949935	Frame_Shift_Del	G	-	p.G228fs
LIHC	TCGA-G3-A3CJ-01	CRELD1	ENST00000326434.5	chr3	9985165:9985199:9985585:9985779:9986048:9986107,	9985586	9985779	9985593	9985593	Frame_Shift_Del	C	-	p.F352fs
LIHC	TCGA-G3-A3CJ-01	EMC3	ENST00000470827.2	chr3	10019072:10019130:10028190:10028586:10052706:10052800,	10028191	10028586	10028300	10028300	Frame_Shift_Del	C	-	p.V17fs
LIHC	TCGA-G3-A3CJ-01	FANCD2	ENST00000287647.3,ENST00000431693.1,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10074515:10074656:10076152:10076220:10076378:10076482,	10076153	10076220	10076179	10076179	Frame_Shift_Del	A	-	p.K78fs
LIHC	TCGA-G3-A3CJ-01	ATP2B2	ENST00000383800.4,ENST00000397077.1,ENST00000452124.1,ENST00000480680.2,ENST00000360273.2,ENST00000460129.1,ENST00000352432.4,ENST00000343816.4	chr3	10442636:10442762:10443774:10444032:10452301:10452359,	10443775	10444032	10443888	10443888	Frame_Shift_Del	C	-	p.G181fs
LIHC	TCGA-G3-A3CJ-01	SLC6A1	ENST00000495636.1,ENST00000287766.4,ENST00000536032.1	chr3	11075324:11075425:11076216:11076384:11078547:11078834,	11076217	11076384	11076327	11076327	Frame_Shift_Del	C	-	p.V546fs
LIHC	TCGA-G3-A3CJ-01	PPARG	ENST00000397023.1,ENST00000309576.6,ENST00000397015.2,ENST00000397010.2,ENST00000397026.2,ENST00000287820.6,ENST00000397012.2	chr3	12447380:12447580:12458202:12458653:12475396:12475715,	12458203	12458653	12458270	12458270	Frame_Shift_Del	C	-	p.T274fs
LIHC	TCGA-G3-A3CJ-01	RAF1	ENST00000251849.4,ENST00000534997.1,ENST00000542177.1,ENST00000471449.1,ENST00000423275.1,ENST00000442415.2,ENST00000432427.2	chr3	12625844:12626156:12626345:12626480:12626620:12626752,	12626346	12626480	12626352	12626352	Frame_Shift_Del	A	-	p.F599fs
LIHC	TCGA-G3-A3CJ-01	TMEM40	ENST00000476331.1,ENST00000428020.1,ENST00000435575.1,ENST00000480698.1,ENST00000435218.2,ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12776205:12776292:12777053:12777116:12778076:12778151,	12777054	12777116	12777078	12777078	Frame_Shift_Del	G	-	p.L220fs
LIHC	TCGA-G3-A3CJ-01	TMEM40	ENST00000435218.2	chr3	12785398:12785488:12790153:12790291:12791258:12791339,12783952:12784006:12790153:12790291:12791258:12791339,	12790154	12790291	12790270	12790270	Frame_Shift_Del	T	-	p.K32fs
LIHC	TCGA-G3-A3CJ-01	CAND2	ENST00000456430.2	chr3	12861584:12861680:12866968:12867138:12868938:12869103,	12866969	12867138	12867068	12867068	Frame_Shift_Del	G	-	p.R1047fs
LIHC	TCGA-G3-A3CJ-01	IQSEC1	ENST00000429247.1	chr3	12938718:12940933:12944272:12944322:12949848:12950025,12942347:12943022:12944272:12944322:12949848:12950025,	12944273	12944322	12944312	12944312	Frame_Shift_Del	C	-	p.G936fs
LIHC	TCGA-G3-A3CJ-01	NUP210	ENST00000254508.5	chr3	13381735:13381798:13383247:13383383:13383495:13383623,	13383248	13383383	13383261	13383261	Frame_Shift_Del	G	-	p.P1072fs
LIHC	TCGA-G3-A3CJ-01	HDAC11	ENST00000404548.1,ENST00000295757.3,ENST00000458642.1,ENST00000402271.1,ENST00000404040.1	chr3	13521832:13521849:13522745:13522894:13524963:13525064,	13522746	13522894	13522873	13522873	Frame_Shift_Del	A	-	p.K44fs
LIHC	TCGA-G3-A3CJ-01	HDAC11	ENST00000433119.1	chr3	13524963:13525064:13538235:13538352:13540012:13540055,13524966:13525064:13538235:13538352:13542212:13542289,	13538236	13538352	13538286	13538286	Frame_Shift_Del	C	-	p.L101fs
LIHC	TCGA-G3-A3CJ-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13613092	13613092	Frame_Shift_Del	C	-	p.P413fs
LIHC	TCGA-G3-A3CJ-01	CHCHD4	ENST00000396914.3	chr3	14154643:14154694:14157925:14158024:14166154:14166249,	14157926	14158024	14157948	14157948	Frame_Shift_Del	G	-	p.P46fs
LIHC	TCGA-G3-A3CJ-01	CCDC174	ENST00000383794.3	chr3	14708311:14708454:14708930:14709025:14709555:14709688,	14708931	14709025	14708999	14708999	Frame_Shift_Del	A	-	p.K265fs
LIHC	TCGA-G3-A3CJ-01	CAPN7	ENST00000253693.2	chr3	15247749:15248104:15253610:15253719:15258931:15259036,	15253611	15253719	15253672	15253672	Frame_Shift_Del	A	-	p.E55fs
LIHC	TCGA-G3-A3CJ-01	CAPN7	ENST00000443567.1	chr3	15282015:15282124:15282260:15282360:15282959:15283095,15282015:15282124:15282260:15282360:15283684:15283760,	15282261	15282360	15282313	15282313	Frame_Shift_Del	T	-	p.Y535fs
LIHC	TCGA-G3-A3CJ-01	METTL6	ENST00000443029.1	chr3	15425408:15425694:15452751:15452944:15455527:15455604,	15452752	15452944	15452862	15452862	Frame_Shift_Del	T	-	p.K252fs
LIHC	TCGA-G3-A3CJ-01	METTL6	ENST00000450816.2	chr3	15455527:15455669:15457278:15457449:15466461:15466542,15455527:15455669:15457278:15457449:15467793:15468142,	15457279	15457449	15457445	15457445	Frame_Shift_Del	T	-	p.N122fs
LIHC	TCGA-G3-A3CJ-01	METTL6	ENST00000383790.3,ENST00000443029.1,ENST00000383789.5	chr3	15457278:15457449:15466461:15466596:15467793:15468142,	15466462	15466596	15466554	15466554	Frame_Shift_Del	C	-	p.V90fs
LIHC	TCGA-G3-A3CJ-01	HACL1	ENST00000422591.1	chr3	15628031:15628109:15631046:15631119:15633106:15633187,15624384:15624496:15631046:15631119:15633106:15633187,	15631047	15631119	15631084	15631084	Frame_Shift_Del	T	-	p.N115fs
LIHC	TCGA-G3-A3CJ-01	GALNT15	ENST00000339732.5,ENST00000437509.1	chr3	16252630:16252748:16254075:16254270:16260909:16261041,	16254076	16254270	16254155	16254155	Frame_Shift_Del	C	-	p.S426fs
LIHC	TCGA-G3-A3CJ-01	OXNAD1	ENST00000544043.1,ENST00000606098.1,ENST00000285083.5,ENST00000435829.2,ENST00000605932.1,ENST00000442255.1,ENST00000452581.1	chr3	16327848:16327955:16336362:16336504:16343132:16343293,	16336363	16336504	16336403	16336403	Frame_Shift_Del	T	-	p.F111fs
LIHC	TCGA-G3-A3CJ-01	RFTN1	ENST00000453536.1,ENST00000334133.4	chr3	16475357:16475544:16535231:16535384:16554948:16555029,	16535232	16535384	16535335	16535335	Frame_Shift_Del	T	-	p.K14fs
LIHC	TCGA-G3-A3CJ-01	TBC1D5	ENST00000429383.4,ENST00000446818.2,ENST00000253692.7,ENST00000429924.2	chr3	17349483:17349626:17413566:17413739:17415962:17416032,	17413567	17413739	17413662	17413662	Frame_Shift_Del	T	-	p.K300fs
LIHC	TCGA-G3-A3CJ-01	TBC1D5	ENST00000445294.1,ENST00000415814.2,ENST00000429383.4,ENST00000446863.1,ENST00000497531.1,ENST00000414349.1,ENST00000507877.1,ENST00000434420.1,ENST00000443499.2,ENST00000425944.1,ENST00000446818.2,ENST00000253692.7,ENST00000428355.1	chr3	17447963:17448018:17469941:17470011:17549965:17550093,	17469942	17470011	17469972	17469972	Frame_Shift_Del	A	-	p.L46fs
LIHC	TCGA-G3-A3CJ-01	RAB5A	ENST00000446547.1,ENST00000469122.1,ENST00000273047.4,ENST00000473608.1,ENST00000422242.1	chr3	20017134:20017244:20017538:20017661:20019801:20019895,	20017539	20017661	20017556	20017556	Frame_Shift_Del	A	-	p.A111fs
LIHC	TCGA-G3-A3CJ-01	RAB5A	ENST00000446547.1,ENST00000469122.1,ENST00000273047.4,ENST00000473608.1,ENST00000422242.1	chr3	20017134:20017244:20017538:20017661:20019801:20019895,	20017539	20017661	20017641	20017641	Frame_Shift_Del	A	-	p.K140fs
LIHC	TCGA-G3-A3CJ-01	KAT2B	ENST00000263754.4	chr3	20167396:20167605:20168914:20169041:20178433:20178544,	20168915	20169041	20168922	20168922	Frame_Shift_Del	A	-	p.K544fs
LIHC	TCGA-G3-A3CJ-01	KAT2B	ENST00000468111.1,ENST00000263754.4	chr3	20168969:20169041:20178433:20178544:20181712:20181856,	20178434	20178544	20178464	20178464	Frame_Shift_Del	A	-	p.K594fs
LIHC	TCGA-G3-A3CJ-01	KAT2B	ENST00000468111.1,ENST00000263754.4	chr3	20168969:20169041:20178433:20178544:20181712:20181856,	20178434	20178544	20178533	20178533	Frame_Shift_Del	T	-	p.F617fs
LIHC	TCGA-G3-A3CJ-01	ZNF385D	ENST00000281523.2	chr3	21465454:21465556:21466983:21467162:21478461:21478695,	21466984	21467162	21467045	21467045	Frame_Shift_Del	T	-	p.N264fs
LIHC	TCGA-G3-A3CJ-01	UBE2E2	ENST00000452894.1,ENST00000335798.4	chr3	23244652:23244753:23250182:23250366:23258752:23258803,	23250183	23250366	23250308	23250308	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	UBE2E1	ENST00000424381.1,ENST00000475680.1,ENST00000306627.3,ENST00000346855.3,ENST00000493707.1	chr3	23929057:23929190:23930602:23930750:23931999:23932363,	23930603	23930750	23930710	23930710	Frame_Shift_Del	C	-	p.V148fs
LIHC	TCGA-G3-A3CJ-01	THRB	ENST00000416420.1,ENST00000413780.1,ENST00000396671.2,ENST00000356447.4	chr3	24188208:24188313:24193880:24193981:24231564:24231825,	24193881	24193981	24193933	24193933	Frame_Shift_Del	C	-	p.G111fs
LIHC	TCGA-G3-A3CJ-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25656963:25657077:25659908:25660000:25660144:25660340,	25659909	25660000	25659975	25659975	Frame_Shift_Del	A	-	p.I1090fs
LIHC	TCGA-G3-A3CJ-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25656963:25657077:25659908:25660000:25660144:25660340,	25659909	25660000	25659984	25659984	Frame_Shift_Del	T	-	p.K1087fs
LIHC	TCGA-G3-A3CJ-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25660144:25660340:25661352:25661553:25662172:25662307,	25661353	25661553	25661490	25661490	Frame_Shift_Del	A	-	p.S971fs
LIHC	TCGA-G3-A3CJ-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25672291:25672430:25673936:25674074:25674183:25674285,	25673937	25674074	25673943	25673943	Frame_Shift_Del	A	-	p.F415fs
LIHC	TCGA-G3-A3CJ-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25672291:25672430:25673936:25674074:25674183:25674285,	25673937	25674074	25674067	25674067	Frame_Shift_Del	T	-	p.N374fs
LIHC	TCGA-G3-A3CJ-01	NGLY1	ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9,ENST00000496726.1	chr3	25760901:25761126:25761504:25761682:25770623:25770807,	25761505	25761682	25761592	25761592	Frame_Shift_Del	A	-	p.S550fs
LIHC	TCGA-G3-A3CJ-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2,ENST00000280699.9	chr3	25770623:25770809:25773809:25773974:25775362:25775469,	25773810	25773974	25773865	25773865	Frame_Shift_Del	C	-	p.G439fs
LIHC	TCGA-G3-A3CJ-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000417874.2,ENST00000280699.9	chr3	25775362:25775473:25777494:25777640:25778824:25778946,	25777495	25777640	25777535	25777535	Frame_Shift_Del	C	-	p.G370fs
LIHC	TCGA-G3-A3CJ-01	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000308710.5,ENST00000428257.1,ENST00000493324.1,ENST00000417874.2	chr3	25778824:25778946:25781067:25781290:25792588:25792754,	25781068	25781290	25781223	25781223	Frame_Shift_Del	A	-	p.F242fs
LIHC	TCGA-G3-A3CJ-01	OXSM	ENST00000448177.1	chr3	25831584:25831638:25832480:25832806:25833260:25833332,	25832481	25832806	25832528	25832528	Frame_Shift_Del	A	-	p.Q6fs
LIHC	TCGA-G3-A3CJ-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25832528	25832528	Frame_Shift_Del	A	-	p.Q6fs
LIHC	TCGA-G3-A3CJ-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833051	25833051	Frame_Shift_Del	C	-	p.V180fs
LIHC	TCGA-G3-A3CJ-01	NEK10	ENST00000341435.5,ENST00000429845.2	chr3	27346237:27346462:27349349:27349436:27350416:27350496,	27349350	27349436	27349392	27349392	Frame_Shift_Del	T	-	p.N254fs
LIHC	TCGA-G3-A3CJ-01	SLC4A7	ENST00000440156.1,ENST00000454389.1,ENST00000428386.1,ENST00000455077.1,ENST00000419036.1,ENST00000437179.1,ENST00000295736.5,ENST00000428179.1,ENST00000446700.1,ENST00000388777.4,ENST00000435667.2,ENST00000445684.1	chr3	27446320:27446454:27450846:27451021:27453132:27453239,	27450847	27451021	27450945	27450945	Frame_Shift_Del	G	-	p.L606fs
LIHC	TCGA-G3-A3CJ-01	SLC4A7	ENST00000454389.1,ENST00000295736.5,ENST00000388777.4	chr3	27465527:27465643:27472788:27473160:27475445:27475595,27465527:27465643:27472788:27473160:27475406:27475595,	27472789	27473160	27473007	27473007	Frame_Shift_Del	G	-	p.P302fs
LIHC	TCGA-G3-A3CJ-01	CMC1	ENST00000423894.1	chr3	28304781:28304871:28357823:28357914:28360999:28361232,28283108:28283303:28357823:28357914:28360999:28361232,	28357824	28357914	28357881	28357881	Frame_Shift_Del	A	-	p.E56fs
LIHC	TCGA-G3-A3CJ-01	STT3B	ENST00000423527.1,ENST00000295770.2	chr3	31575116:31575178:31617887:31617996:31621300:31621588,31574463:31574804:31617887:31617996:31621300:31621588,	31617888	31617996	31617937	31617937	Frame_Shift_Del	T	-	p.F122fs
LIHC	TCGA-G3-A3CJ-01	STT3B	ENST00000423527.1,ENST00000295770.2,ENST00000462235.1,ENST00000453168.1	chr3	31617887:31617996:31621300:31621588:31638289:31638355,	31621301	31621588	31621344	31621344	Frame_Shift_Del	T	-	p.I156fs
LIHC	TCGA-G3-A3CJ-01	STT3B	ENST00000423527.1,ENST00000295770.2,ENST00000436236.1,ENST00000453168.1	chr3	31656596:31656695:31658420:31658567:31659431:31659480,	31658421	31658567	31658554	31658554	Frame_Shift_Del	T	-	p.Y370fs
LIHC	TCGA-G3-A3CJ-01	STT3B	ENST00000295770.2	chr3	31661277:31661322:31663588:31663800:31665165:31665353,	31663589	31663800	31663713	31663713	Frame_Shift_Del	G	-	p.L484fs
LIHC	TCGA-G3-A3CJ-01	OSBPL10	ENST00000438237.2,ENST00000396556.2,ENST00000429492.2	chr3	31743867:31744000:31774748:31774903:31789401:31789612,	31774749	31774903	31774795	31774795	Frame_Shift_Del	A	-	p.L350fs
LIHC	TCGA-G3-A3CJ-01	GPD1L	ENST00000429432.1,ENST00000282541.5,ENST00000431009.1	chr3	32169567:32169745:32180078:32180219:32181719:32181853,	32180079	32180219	32180139	32180139	Frame_Shift_Del	C	-	p.P96fs
LIHC	TCGA-G3-A3CJ-01	GPD1L	ENST00000282541.5,ENST00000428684.1	chr3	32188113:32188226:32200367:32200601:32201059:32201107,	32200368	32200601	32200561	32200561	Frame_Shift_Del	G	-	p.R271fs
LIHC	TCGA-G3-A3CJ-01	CNOT10	ENST00000538368.1,ENST00000463697.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000455381.1	chr3	32758645:32758729:32761605:32761723:32766941:32767091,	32761606	32761723	32761627	32761627	Frame_Shift_Del	A	-	p.K256fs
LIHC	TCGA-G3-A3CJ-01	CNOT10	ENST00000430408.1,ENST00000538368.1,ENST00000454516.2,ENST00000328834.5,ENST00000416457.1	chr3	32776313:32776468:32778901:32778982:32800949:32801063,	32778902	32778982	32778959	32778959	Frame_Shift_Del	A	-	p.R524fs
LIHC	TCGA-G3-A3CJ-01	GLB1	ENST00000399402.3,ENST00000307363.5,ENST00000445488.2,ENST00000438227.1,ENST00000446732.1	chr3	33094982:33095041:33099580:33099761:33106954:33107049,	33099581	33099761	33099638	33099638	Frame_Shift_Del	T	-	p.T226fs
LIHC	TCGA-G3-A3CJ-01	GLB1	ENST00000307377.8	chr3	33094982:33095041:33106954:33107049:33114035:33114205,	33106955	33107049	33107019	33107019	Frame_Shift_Del	C	-	p.G163fs
LIHC	TCGA-G3-A3CJ-01	SUSD5	ENST00000309558.3	chr3	33195201:33195525:33216377:33216566:33249299:33249418,	33216378	33216566	33216495	33216495	Frame_Shift_Del	C	-	p.D161fs
LIHC	TCGA-G3-A3CJ-01	PDCD6IP	ENST00000435909.1	chr3	33840121:33840429:33855050:33855120:33863446:33863491,	33855051	33855120	33855090	33855090	Frame_Shift_Del	G	-	p.G102fs
LIHC	TCGA-G3-A3CJ-01	ARPP21	ENST00000417925.1,ENST00000337271.5,ENST00000444190.1,ENST00000458225.1,ENST00000187397.4	chr3	35725217:35725307:35729230:35729375:35730798:35730877,	35729231	35729375	35729257	35729257	Frame_Shift_Del	T	-	p.S96fs
LIHC	TCGA-G3-A3CJ-01	STAC	ENST00000473452.1,ENST00000457375.2,ENST00000273183.3,ENST00000476388.1,ENST00000434649.1	chr3	36534642:36534721:36545884:36545949:36547237:36547278,	36545885	36545949	36545887	36545887	Frame_Shift_Del	T	-	p.F257fs
LIHC	TCGA-G3-A3CJ-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897205	36897205	Frame_Shift_Del	T	-	p.K742fs
LIHC	TCGA-G3-A3CJ-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36899081	36899081	Frame_Shift_Del	G	-	p.P117fs
LIHC	TCGA-G3-A3CJ-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000456676.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37061800:37061954:37067127:37067498:37070274:37070338,	37067128	37067498	37067166	37067166	Frame_Shift_Del	G	-	p.M359fs
LIHC	TCGA-G3-A3CJ-01	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37089049:37089174:37090007:37090100:37090394:37090508,	37090008	37090100	37090029	37090029	Frame_Shift_Del	C	-	p.P640fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365819	37365819	Frame_Shift_Del	A	-	p.T814fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366247	37366247	Frame_Shift_Del	A	-	p.E957fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366364	37366364	Frame_Shift_Del	A	-	p.E996fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366787	37366787	Frame_Shift_Del	A	-	p.E1137fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37366955	37366955	Frame_Shift_Del	A	-	p.E1193fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368314	37368314	Frame_Shift_Del	A	-	p.Q1646fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368665	37368665	Frame_Shift_Del	T	-	p.V1763fs
LIHC	TCGA-G3-A3CJ-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368785	37368785	Frame_Shift_Del	A	-	p.E1803fs
LIHC	TCGA-G3-A3CJ-01	ITGA9	ENST00000422441.1,ENST00000264741.5	chr3	37550049:37550118:37555253:37555391:37558994:37559100,	37555254	37555391	37555325	37555325	Frame_Shift_Del	G	-	p.V323fs
LIHC	TCGA-G3-A3CJ-01	ITGA9	ENST00000264741.5	chr3	37791952:37792060:37818882:37819008:37821392:37821512,	37818883	37819008	37818999	37818999	Frame_Shift_Del	A	-	p.R886fs
LIHC	TCGA-G3-A3CJ-01	PLCD1	ENST00000461445.1	chr3	38049764:38049858:38049948:38050649:38050762:38050922,	38049949	38050649	38050601	38050601	Frame_Shift_Del	G	-	p.P573fs
LIHC	TCGA-G3-A3CJ-01	DLEC1	ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38135095:38135258:38136369:38136562:38137378:38137432,	38136370	38136562	38136466	38136466	Frame_Shift_Del	C	-	p.Y672fs
LIHC	TCGA-G3-A3CJ-01	DLEC1	ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38158465:38158591:38158698:38158793:38159017:38159102,	38158699	38158793	38158753	38158753	Frame_Shift_Del	C	-	p.P1454fs
LIHC	TCGA-G3-A3CJ-01	MYD88	ENST00000421516.1,ENST00000417037.2	chr3	38181354:38181489:38181878:38182083:38182247:38182339,	38181879	38182083	38182053	38182053	Frame_Shift_Del	A	-	p.E226fs
LIHC	TCGA-G3-A3CJ-01	MYD88	ENST00000424893.1	chr3	38181354:38181489:38181878:38182059:38182247:38182339,38180155:38180519:38181878:38182059:38182247:38182339,	38181879	38182059	38182053	38182053	Frame_Shift_Del	A	-	p.E226fs
LIHC	TCGA-G3-A3CJ-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2,ENST00000431162.2,ENST00000493856.1,ENST00000472866.2	chr3	39177890:39177998:39178389:39178551:39178685:39178744,	39178390	39178551	39178452	39178452	Frame_Shift_Del	G	-	p.W1061fs
LIHC	TCGA-G3-A3CJ-01	SEC22C	ENST00000264454.3,ENST00000423701.2,ENST00000273156.7	chr3	42605100:42605178:42610356:42610565:42623337:42623393,	42610357	42610565	42610365	42610365	Frame_Shift_Del	A	-	p.F58fs
LIHC	TCGA-G3-A3CJ-01	SEC22C	ENST00000264454.3,ENST00000423701.2,ENST00000273156.7	chr3	42605100:42605178:42610356:42610565:42623337:42623393,	42610357	42610565	42610521	42610521	Frame_Shift_Del	A	-	p.F6fs
LIHC	TCGA-G3-A3CJ-01	SNRK	ENST00000429705.2	chr3	43328077:43328167:43344589:43345284:43373660:43373802,	43344590	43345284	43344874	43344874	Frame_Shift_Del	T	-	p.L60fs
LIHC	TCGA-G3-A3CJ-01	SNRK	ENST00000429705.2,ENST00000437827.1,ENST00000454177.1,ENST00000296088.7	chr3	43373660:43373802:43381778:43381991:43384835:43384970,	43381779	43381991	43381894	43381894	Frame_Shift_Del	C	-	p.P283fs
LIHC	TCGA-G3-A3CJ-01	ANO10	ENST00000414522.2,ENST00000350459.4,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43602864:43602894:43607144:43607219:43640023:43640158,43602864:43602894:43607144:43607219:43616300:43616356,	43607145	43607219	43607175	43607175	Frame_Shift_Del	A	-	p.F421fs
LIHC	TCGA-G3-A3CJ-01	ANO10	ENST00000414522.2,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43616300:43616356:43618183:43618753:43621844:43621964,	43618184	43618753	43618493	43618493	Frame_Shift_Del	G	-	p.R285fs
LIHC	TCGA-G3-A3CJ-01	TCAIM	ENST00000342649.4,ENST00000412611.2,ENST00000417768.1,ENST00000417237.1	chr3	44409023:44409200:44434346:44434469:44437891:44437989,	44434347	44434469	44434369	44434369	Frame_Shift_Del	A	-	p.K199fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC3	ENST00000296127.3,ENST00000479314.1	chr3	44970797:44970928:44974398:44974482:44974609:44974690,	44974399	44974482	44974426	44974426	Frame_Shift_Del	T	-	p.M223fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44986659:44986784:45000622:45000952:45017424:45017658,	45000623	45000952	45000649	45000649	Frame_Shift_Del	G	-	p.H94fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44986659:44986784:45000622:45000952:45017424:45017658,	45000623	45000952	45000845	45000845	Frame_Shift_Del	G	-	p.P28fs
LIHC	TCGA-G3-A3CJ-01	CDCP1	ENST00000296129.1	chr3	45123769:45127559:45130545:45130633:45132664:45133030,	45130546	45130633	45130549	45130549	Frame_Shift_Del	T	-	p.K697fs
LIHC	TCGA-G3-A3CJ-01	CDCP1	ENST00000296129.1	chr3	45134768:45135149:45136838:45137060:45151964:45152333,	45136839	45137060	45136845	45136845	Frame_Shift_Del	T	-	p.T414fs
LIHC	TCGA-G3-A3CJ-01	CDCP1	ENST00000425231.2,ENST00000296129.1	chr3	45151964:45152333:45153574:45153937:45159903:45160110,	45153575	45153937	45153806	45153806	Frame_Shift_Del	A	-	p.S142fs
LIHC	TCGA-G3-A3CJ-01	CDCP1	ENST00000425231.2	chr3	45153828:45153937:45159903:45160113:45187697:45187914,	45159904	45160113	45160084	45160084	Frame_Shift_Del	T	-	p.S38fs
LIHC	TCGA-G3-A3CJ-01	LTF	ENST00000231751.4,ENST00000417439.1,ENST00000443496.1,ENST00000426532.2	chr3	46477691:46477720:46479430:46479620:46480786:46480971,	46479431	46479620	46479609	46479609	Frame_Shift_Del	C	-	p.G640fs
LIHC	TCGA-G3-A3CJ-01	LTF	ENST00000417439.1	chr3	46497779:46497888:46501145:46501309:46506314:46506358,	46501146	46501309	46501170	46501170	Frame_Shift_Del	G	-	p.P61fs
LIHC	TCGA-G3-A3CJ-01	LRRC2	ENST00000395905.3,ENST00000296144.3	chr3	46580534:46580691:46586535:46586743:46592956:46593100,	46586536	46586743	46586566	46586566	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-G3-A3CJ-01	ALS2CL	ENST00000434140.1,ENST00000415953.1,ENST00000318962.4,ENST00000431015.1,ENST00000423707.1,ENST00000383742.3,ENST00000486301.1,ENST00000450172.1	chr3	46712977:46713074:46713373:46713523:46713629:46713691,	46713374	46713523	46713435	46713435	Frame_Shift_Del	C	-	p.E875fs
LIHC	TCGA-G3-A3CJ-01	ALS2CL	ENST00000434140.1,ENST00000415953.1,ENST00000318962.4,ENST00000383742.3	chr3	46714828:46714871:46716055:46716229:46717107:46717176,	46716056	46716229	46716138	46716138	Frame_Shift_Del	C	-	p.E783fs
LIHC	TCGA-G3-A3CJ-01	ALS2CL	ENST00000434140.1	chr3	46721919:46722031:46722735:46722897:46722989:46723063,46721919:46722031:46722735:46722897:46722993:46723088,	46722736	46722897	46722809	46722809	Frame_Shift_Del	G	-	p.Q455fs
LIHC	TCGA-G3-A3CJ-01	PTH1R	ENST00000418619.1,ENST00000430002.2,ENST00000427125.2,ENST00000313049.5,ENST00000449590.1,ENST00000428220.1	chr3	46925001:46925124:46935396:46935499:46937224:46937359,	46935397	46935499	46935467	46935467	Frame_Shift_Del	A	-	p.E49fs
LIHC	TCGA-G3-A3CJ-01	PTH1R	ENST00000418619.1,ENST00000430002.2,ENST00000427125.2,ENST00000313049.5,ENST00000449590.1,ENST00000428220.1	chr3	46944088:46944157:46944238:46944280:46944759:46944945,	46944239	46944280	46944242	46944242	Frame_Shift_Del	T	-	p.F454fs
LIHC	TCGA-G3-A3CJ-01	NBEAL2	ENST00000292309.5,ENST00000383740.2,ENST00000450053.3	chr3	47033329:47033436:47033964:47034045:47035426:47035510,	47033965	47034045	47033986	47033986	Frame_Shift_Del	C	-	p.P353fs
LIHC	TCGA-G3-A3CJ-01	NBEAL2	ENST00000292309.5,ENST00000383740.2,ENST00000416683.1,ENST00000450053.3,ENST00000443829.1	chr3	47048730:47048840:47049014:47049187:47049305:47049400,	47049015	47049187	47049036	47049036	Frame_Shift_Del	C	-	p.G2452fs
LIHC	TCGA-G3-A3CJ-01	SETD2	ENST00000409792.3,ENST00000330022.7	chr3	47103652:47103836:47108559:47108608:47125209:47125436,	47108560	47108608	47108584	47108584	Frame_Shift_Del	T	-	p.S2029fs
LIHC	TCGA-G3-A3CJ-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125556	47125556	Frame_Shift_Del	C	-	p.G1905fs
LIHC	TCGA-G3-A3CJ-01	PTPN23	ENST00000265562.4	chr3	47437632:47437707:47446141:47446269:47446494:47446539,	47446142	47446269	47446171	47446171	Frame_Shift_Del	G	-	p.E63fs
LIHC	TCGA-G3-A3CJ-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618471	47618471	Frame_Shift_Del	C	-	p.D349fs
LIHC	TCGA-G3-A3CJ-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618722	47618722	Frame_Shift_Del	A	-	p.F265fs
LIHC	TCGA-G3-A3CJ-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47702783:47702945:47703823:47704082:47712147:47712207,	47703824	47704082	47703877	47703877	Frame_Shift_Del	A	-	p.L702fs
LIHC	TCGA-G3-A3CJ-01	ZNF589	ENST00000448461.1	chr3	48302302:48302429:48309404:48312459:48327735:48328120,	48309405	48312459	48310246	48310246	Frame_Shift_Del	G	-	p.T355fs
LIHC	TCGA-G3-A3CJ-01	CCDC51	ENST00000395694.2	chr3	48475116:48475281:48476226:48476546:48481397:48481475,	48476227	48476546	48476240	48476240	Frame_Shift_Del	C	-	p.G100fs
LIHC	TCGA-G3-A3CJ-01	CCDC51	ENST00000395694.2	chr3	48475116:48475281:48476226:48476546:48481397:48481475,	48476227	48476546	48476311	48476311	Frame_Shift_Del	G	-	p.T76fs
LIHC	TCGA-G3-A3CJ-01	SHISA5	ENST00000296444.2,ENST00000426002.1,ENST00000444115.1,ENST00000443308.2,ENST00000442747.1,ENST00000465449.1,ENST00000417962.1	chr3	48510166:48510585:48510759:48510972:48511126:48511242,	48510760	48510972	48510902	48510902	Frame_Shift_Del	G	-	p.P167fs
LIHC	TCGA-G3-A3CJ-01	COL7A1	ENST00000459756.1,ENST00000454817.1,ENST00000487017.1,ENST00000328333.8,ENST00000467985.1,ENST00000422991.1	chr3	48607190:48607193:48607312:48607348:48607566:48607611,	48607313	48607348	48607346	48607346	Frame_Shift_Del	C	-	p.G2496fs
LIHC	TCGA-G3-A3CJ-01	COL7A1	ENST00000454817.1,ENST00000328333.8	chr3	48630788:48630882:48630969:48631129:48631800:48631981,	48630970	48631129	48631035	48631035	Frame_Shift_Del	C	-	p.A122fs
LIHC	TCGA-G3-A3CJ-01	SLC26A6	ENST00000395550.2,ENST00000489483.1,ENST00000414944.1,ENST00000383733.3,ENST00000496469.1,ENST00000337000.8,ENST00000421649.1,ENST00000358747.6,ENST00000420764.2,ENST00000444531.1,ENST00000480524.1,ENST00000455886.2,ENST00000307364.6	chr3	48667895:48667948:48668039:48668153:48668425:48668559,	48668040	48668153	48668050	48668050	Frame_Shift_Del	C	-	p.G392fs
LIHC	TCGA-G3-A3CJ-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48689309:48689481:48689869:48689986:48690434:48690548,	48689870	48689986	48689915	48689915	Frame_Shift_Del	G	-	p.P1902fs
LIHC	TCGA-G3-A3CJ-01	NCKIPSD	ENST00000341520.4,ENST00000416649.2,ENST00000294129.2	chr3	48717491:48717662:48718719:48719213:48719477:48719568,	48718720	48719213	48718885	48718885	Frame_Shift_Del	G	-	p.P309fs
LIHC	TCGA-G3-A3CJ-01	IP6K2	ENST00000432678.2	chr3	48731607:48731673:48731891:48731958:48732522:48732851,	48731892	48731958	48731917	48731917	Frame_Shift_Del	C	-	p.E82fs
LIHC	TCGA-G3-A3CJ-01	PRKAR2A	ENST00000265563.8,ENST00000296446.8,ENST00000454963.1	chr3	48802436:48802511:48802680:48802782:48810387:48810541,	48802681	48802782	48802739	48802739	Frame_Shift_Del	T	-	p.K248fs
LIHC	TCGA-G3-A3CJ-01	SLC25A20	ENST00000319017.4,ENST00000440964.1,ENST00000430379.1,ENST00000544097.1	chr3	48895939:48896064:48896524:48896634:48896987:48897060,	48896525	48896634	48896554	48896554	Frame_Shift_Del	G	-	p.P230fs
LIHC	TCGA-G3-A3CJ-01	ARIH2	ENST00000486316.1,ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000452385.1,ENST00000474936.2	chr3	49002351:49002415:49004557:49004708:49005966:49006014,	49004558	49004708	49004648	49004648	Frame_Shift_Del	T	-	p.F160fs
LIHC	TCGA-G3-A3CJ-01	P4HTM	ENST00000343546.4	chr3	49042293:49042603:49043150:49043300:49043496:49043620,	49043151	49043300	49043193	49043193	Frame_Shift_Del	C	-	p.P415fs
LIHC	TCGA-G3-A3CJ-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49049884	49049884	Frame_Shift_Del	C	-	p.A336fs
LIHC	TCGA-G3-A3CJ-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49049884	49049884	Frame_Shift_Del	C	-	p.A336fs
LIHC	TCGA-G3-A3CJ-01	QRICH1	ENST00000357496.2,ENST00000479449.1,ENST00000424300.1,ENST00000395443.2,ENST00000498440.1	chr3	49070552:49070661:49081822:49081937:49083857:49083891,	49081823	49081937	49081838	49081838	Frame_Shift_Del	G	-	p.R591fs
LIHC	TCGA-G3-A3CJ-01	QRICH1	ENST00000479449.1	chr3	49084501:49084679:49094294:49094476:49095224:49095308,	49094295	49094476	49094368	49094368	Frame_Shift_Del	G	-	p.P422fs
LIHC	TCGA-G3-A3CJ-01	QRICH1	ENST00000357496.2,ENST00000424300.1,ENST00000395443.2	chr3	49084501:49084679:49094294:49095323:49114141:49114471,	49094295	49095323	49094368	49094368	Frame_Shift_Del	G	-	p.P422fs
LIHC	TCGA-G3-A3CJ-01	QARS	ENST00000453392.1,ENST00000497635.1	chr3	49133426:49133512:49135624:49135691:49135785:49135913,	49135625	49135691	49135670	49135670	Frame_Shift_Del	T	-	p.E702fs
LIHC	TCGA-G3-A3CJ-01	QARS	ENST00000470113.1,ENST00000459870.1	chr3	49133426:49133512:49135424:49135913:49136032:49136125,	49135425	49135913	49135670	49135670	Frame_Shift_Del	T	-	p.E702fs
LIHC	TCGA-G3-A3CJ-01	QARS	ENST00000418549.1,ENST00000430182.1	chr3	49141295:49141405:49141805:49141904:49142049:49142131,	49141806	49141904	49141846	49141846	Frame_Shift_Del	A	-	p.L59fs
LIHC	TCGA-G3-A3CJ-01	QARS	ENST00000420147.2,ENST00000417025.1,ENST00000470619.1,ENST00000306125.6,ENST00000482261.2	chr3	49141295:49141405:49141756:49141904:49142049:49142131,	49141757	49141904	49141846	49141846	Frame_Shift_Del	A	-	p.L59fs
LIHC	TCGA-G3-A3CJ-01	C3orf62	ENST00000436325.1	chr3	49311481:49311573:49313859:49314274:49314618:49314652,	49313860	49314274	49313997	49313997	Frame_Shift_Del	T	-	p.K103fs
LIHC	TCGA-G3-A3CJ-01	RHOA	ENST00000418115.1	chr3	49397554:49397815:49399928:49400059:49412866:49413024,49397554:49397815:49399928:49400059:49405860:49405874,	49399929	49400059	49400044	49400044	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-G3-A3CJ-01	APEH	ENST00000296456.5,ENST00000457042.1,ENST00000462439.1,ENST00000463616.1,ENST00000438011.1	chr3	49711921:49712054:49712615:49712742:49713126:49713220,	49712616	49712742	49712680	49712680	Frame_Shift_Del	C	-	p.F70fs
LIHC	TCGA-G3-A3CJ-01	APEH	ENST00000296456.5,ENST00000457042.1,ENST00000462439.1,ENST00000463616.1,ENST00000438011.1	chr3	49711921:49712054:49712615:49712742:49713126:49713220,	49712616	49712742	49712736	49712736	Frame_Shift_Del	G	-	p.R89fs
LIHC	TCGA-G3-A3CJ-01	MST1	ENST00000449682.2,ENST00000492329.1,ENST00000484269.1	chr3	49722444:49722518:49722694:49722815:49722903:49722939,49722170:49722388:49722694:49722815:49722903:49722939,49722444:49722522:49722694:49722815:49722903:49722939,	49722695	49722815	49722737	49722737	Frame_Shift_Del	C	-	p.G501fs
LIHC	TCGA-G3-A3CJ-01	UBA7	ENST00000333486.3	chr3	49842656:49842870:49843329:49843430:49843505:49843598,	49843330	49843430	49843354	49843354	Frame_Shift_Del	T	-	p.K962fs
LIHC	TCGA-G3-A3CJ-01	UBA7	ENST00000333486.3	chr3	49847410:49847616:49847695:49847861:49847949:49847965,	49847696	49847861	49847743	49847743	Frame_Shift_Del	A	-	p.F529fs
LIHC	TCGA-G3-A3CJ-01	UBA7	ENST00000333486.3	chr3	49847804:49847861:49847949:49848105:49848184:49848261,	49847950	49848105	49848029	49848029	Frame_Shift_Del	C	-	p.G463fs
LIHC	TCGA-G3-A3CJ-01	TRAIP	ENST00000469027.1,ENST00000473195.1,ENST00000331456.2	chr3	49866890:49866941:49867049:49867199:49867452:49867501,	49867050	49867199	49867122	49867122	Frame_Shift_Del	A	-	p.F388fs
LIHC	TCGA-G3-A3CJ-01	TRAIP	ENST00000331456.2,ENST00000482582.1	chr3	49877716:49877806:49878417:49878505:49879258:49879372,	49878418	49878505	49878432	49878432	Frame_Shift_Del	A	-	p.S232fs
LIHC	TCGA-G3-A3CJ-01	MST1R	ENST00000296474.3,ENST00000344206.4	chr3	49929203:49929271:49932599:49932806:49932879:49932981,	49932600	49932806	49932624	49932624	Frame_Shift_Del	G	-	p.H1083fs
LIHC	TCGA-G3-A3CJ-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49946685:49946833:49947551:49948317:49950652:49950792,49946685:49946833:49947551:49948317:49948958:49949444,	49947552	49948317	49948073	49948073	Frame_Shift_Del	G	-	p.P294fs
LIHC	TCGA-G3-A3CJ-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49947551:49948317:49948958:49949444:49950652:49950792,	49948959	49949444	49949167	49949167	Frame_Shift_Del	G	-	p.P143fs
LIHC	TCGA-G3-A3CJ-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50006149	50006149	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-G3-A3CJ-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50006149	50006149	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-G3-A3CJ-01	RBM6	ENST00000442092.1,ENST00000539992.1,ENST00000419610.1,ENST00000443081.1,ENST00000422955.1,ENST00000454079.1,ENST00000266022.4	chr3	50106122:50106197:50107887:50107985:50112633:50112763,	50107888	50107985	50107935	50107935	Frame_Shift_Del	T	-	p.S890fs
LIHC	TCGA-G3-A3CJ-01	SEMA3F	ENST00000413852.1,ENST00000002829.3,ENST00000434342.1	chr3	50223098:50223140:50223321:50223479:50223713:50223781,	50223322	50223479	50223388	50223388	Frame_Shift_Del	G	-	p.G552fs
LIHC	TCGA-G3-A3CJ-01	HYAL1	ENST00000457214.2,ENST00000320295.8,ENST00000447605.2,ENST00000266031.4,ENST00000395144.2	chr3	50337912:50338231:50338418:50338508:50339487:50339636,	50338419	50338508	50338484	50338484	Frame_Shift_Del	C	-	p.E309fs
LIHC	TCGA-G3-A3CJ-01	RASSF1	ENST00000359365.4	chr3	50369480:50369585:50375335:50375442:50377986:50378261,	50375336	50375442	50375380	50375380	Frame_Shift_Del	G	-	p.R105fs
LIHC	TCGA-G3-A3CJ-01	RASSF1	ENST00000357043.2	chr3	50369480:50369585:50375335:50375454:50377986:50378261,	50375336	50375454	50375380	50375380	Frame_Shift_Del	G	-	p.R105fs
LIHC	TCGA-G3-A3CJ-01	NPRL2	ENST00000493465.1	chr3	50385189:50385332:50385957:50385994:50386115:50386213,	50385958	50385994	50385982	50385982	Frame_Shift_Del	A	-	p.V233fs
LIHC	TCGA-G3-A3CJ-01	C3orf18	ENST00000464080.1,ENST00000486175.1,ENST00000426034.1,ENST00000422619.1,ENST00000484982.1,ENST00000441239.1,ENST00000449241.1,ENST00000430746.1,ENST00000357203.3	chr3	50597029:50597168:50598347:50598495:50599152:50599178,	50598348	50598495	50598447	50598447	Frame_Shift_Del	G	-	p.P103fs
LIHC	TCGA-G3-A3CJ-01	HEMK1	ENST00000455834.1,ENST00000434410.1,ENST00000448997.1,ENST00000232854.4	chr3	50609545:50609639:50614482:50614617:50614939:50615004,	50614483	50614617	50614523	50614523	Frame_Shift_Del	C	-	p.S152fs
LIHC	TCGA-G3-A3CJ-01	MAPKAPK3	ENST00000357955.2	chr3	50654561:50654672:50654944:50655215:50677796:50677936,50654600:50654657:50654944:50655215:50677796:50677936,	50654945	50655215	50655152	50655152	Frame_Shift_Del	G	-	p.L52fs
LIHC	TCGA-G3-A3CJ-01	RAD54L2	ENST00000409535.2,ENST00000487093.1	chr3	51661568:51661770:51663349:51663489:51664287:51664404,	51663350	51663489	51663485	51663485	Frame_Shift_Del	C	-	p.L159fs
LIHC	TCGA-G3-A3CJ-01	TEX264	ENST00000457927.1,ENST00000415259.1,ENST00000412249.1	chr3	51705311:51705347:51708286:51708578:51718428:51718483,51705289:51705563:51708286:51708578:51718428:51718483,51705260:51705304:51708286:51708578:51718428:51718477,51705910:51706099:51708286:51708578:51718428:51718483,51706356:51706408:51708286:51708578:51718428:51718483,51706243:51706317:51708286:51708578:51718428:51718483,	51708287	51708578	51708435	51708435	Frame_Shift_Del	G	-	p.G39fs
LIHC	TCGA-G3-A3CJ-01	TEX264	ENST00000457927.1,ENST00000415259.1,ENST00000412249.1	chr3	51705311:51705347:51708286:51708578:51718428:51718483,51705289:51705563:51708286:51708578:51718428:51718483,51705260:51705304:51708286:51708578:51718428:51718477,51705910:51706099:51708286:51708578:51718428:51718483,51706356:51706408:51708286:51708578:51718428:51718483,51706243:51706317:51708286:51708578:51718428:51718483,	51708287	51708578	51708441	51708441	Frame_Shift_Del	C	-	p.P42fs
LIHC	TCGA-G3-A3CJ-01	PPM1M	ENST00000409502.3,ENST00000457454.1	chr3	52280710:52280828:52281697:52281810:52282168:52282253,	52281698	52281810	52281724	52281724	Frame_Shift_Del	G	-	p.E47fs
LIHC	TCGA-G3-A3CJ-01	GLYCTK	ENST00000489173.1	chr3	52325762:52325938:52326275:52327190:52327322:52327485,	52326276	52327190	52326906	52326906	Frame_Shift_Del	T	-	p.F446fs
LIHC	TCGA-G3-A3CJ-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52360155:52360330:52360750:52360907:52361897:52362030,	52360751	52360907	52360850	52360850	Frame_Shift_Del	C	-	p.H227fs
LIHC	TCGA-G3-A3CJ-01	DNAH1	ENST00000490713.1,ENST00000486752.1,ENST00000420323.2,ENST00000488988.1	chr3	52422898:52422953:52423476:52423602:52424950:52425070,	52423477	52423602	52423572	52423572	Frame_Shift_Del	G	-	p.L3197fs
LIHC	TCGA-G3-A3CJ-01	DNAH1	ENST00000490713.1,ENST00000480649.1,ENST00000486752.1,ENST00000420323.2,ENST00000488988.1	chr3	52425194:52425344:52425458:52425619:52426479:52426572,	52425459	52425619	52425494	52425494	Frame_Shift_Del	G	-	p.L3309fs
LIHC	TCGA-G3-A3CJ-01	PHF7	ENST00000498509.2,ENST00000347025.2,ENST00000472337.1,ENST00000461861.1,ENST00000327906.3	chr3	52453935:52453950:52454326:52454451:52454918:52455011,	52454327	52454451	52454435	52454435	Frame_Shift_Del	T	-	p.F134fs
LIHC	TCGA-G3-A3CJ-01	SEMA3G	ENST00000231721.2	chr3	52467068:52470089:52471542:52471682:52471986:52472133,	52471543	52471682	52471552	52471552	Frame_Shift_Del	C	-	p.G623fs
LIHC	TCGA-G3-A3CJ-01	STAB1	ENST00000321725.6	chr3	52553959:52554136:52554219:52554306:52554415:52554565,	52554220	52554306	52554268	52554268	Frame_Shift_Del	G	-	p.G1821fs
LIHC	TCGA-G3-A3CJ-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597340	52597340	Frame_Shift_Del	G	-	p.L1317fs
LIHC	TCGA-G3-A3CJ-01	GNL3	ENST00000496254.1,ENST00000394799.2,ENST00000418458.1	chr3	52726887:52727062:52727202:52727345:52727423:52727560,	52727203	52727345	52727285	52727285	Frame_Shift_Del	A	-	p.Q364fs
LIHC	TCGA-G3-A3CJ-01	GLT8D1	ENST00000481643.1,ENST00000463827.1,ENST00000407584.3,ENST00000394783.3,ENST00000266014.5,ENST00000491606.1,ENST00000478968.2	chr3	52729205:52729318:52729436:52729603:52729943:52730056,	52729437	52729603	52729572	52729572	Frame_Shift_Del	T	-	p.K226fs
LIHC	TCGA-G3-A3CJ-01	NEK4	ENST00000496822.1	chr3	52800331:52800391:52802353:52802582:52804669:52804872,	52802354	52802582	52802497	52802497	Frame_Shift_Del	C	-	p.E73fs
LIHC	TCGA-G3-A3CJ-01	NEK4	ENST00000383721.4	chr3	52800331:52800391:52802353:52802620:52804669:52804872,	52802354	52802620	52802497	52802497	Frame_Shift_Del	C	-	p.E73fs
LIHC	TCGA-G3-A3CJ-01	ITIH1	ENST00000540715.1,ENST00000273283.2,ENST00000537050.1	chr3	52820310:52820450:52820960:52821115:52821203:52821218,	52820961	52821115	52821106	52821106	Frame_Shift_Del	C	-	p.P627fs
LIHC	TCGA-G3-A3CJ-01	ITIH1	ENST00000428133.1,ENST00000405128.3,ENST00000540715.1,ENST00000542827.1,ENST00000273283.2,ENST00000537050.1	chr3	52823668:52823870:52824764:52824937:52825532:52825615,	52824765	52824937	52824855	52824855	Frame_Shift_Del	G	-	p.K804fs
LIHC	TCGA-G3-A3CJ-01	ITIH4	ENST00000485816.1,ENST00000406595.1,ENST00000266041.4,ENST00000491663.1	chr3	52850899:52851074:52852067:52852184:52852272:52852299,	52852068	52852184	52852099	52852099	Frame_Shift_Del	C	-	p.G755fs
LIHC	TCGA-G3-A3CJ-01	ITIH4	ENST00000346281.5	chr3	52850899:52851074:52852067:52852226:52852272:52852299,	52852068	52852226	52852099	52852099	Frame_Shift_Del	C	-	p.G755fs
LIHC	TCGA-G3-A3CJ-01	TKT	ENST00000450814.2	chr3	53267171:53267290:53268998:53269080:53274266:53274364,	53268999	53269080	53269065	53269065	Frame_Shift_Del	C	-	p.G188fs
LIHC	TCGA-G3-A3CJ-01	TKT	ENST00000462138.1,ENST00000423525.2,ENST00000296289.6,ENST00000469678.1	chr3	53267171:53267290:53268998:53269190:53274266:53274364,	53268999	53269190	53269065	53269065	Frame_Shift_Del	C	-	p.G188fs
LIHC	TCGA-G3-A3CJ-01	IL17RB	ENST00000475124.1,ENST00000288167.3,ENST00000494338.1	chr3	53883681:53883822:53886025:53886153:53886897:53887024,	53886026	53886153	53886121	53886121	Frame_Shift_Del	T	-	p.F108fs
LIHC	TCGA-G3-A3CJ-01	IL17RB	ENST00000475124.1	chr3	53890870:53891013:53891642:53892845:53894156:53894255,	53891643	53892845	53891659	53891659	Frame_Shift_Del	A	-	p.Q230fs
LIHC	TCGA-G3-A3CJ-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000492460.1,ENST00000471363.1,ENST00000490478.1	chr3	54420741:54420801:54537518:54537681:54596826:54596942,	54537519	54537681	54537569	54537569	Frame_Shift_Del	T	-	p.N144fs
LIHC	TCGA-G3-A3CJ-01	CACNA2D3	ENST00000471363.1	chr3	54798244:54798378:54871185:54871257:54872594:54872675,	54871186	54871257	54871237	54871237	Frame_Shift_Del	T	-	p.F484fs
LIHC	TCGA-G3-A3CJ-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1,ENST00000341455.6	chr3	56593596:56593622:56597711:56598153:56600621:56600734,	56597712	56598153	56598088	56598088	Frame_Shift_Del	T	-	p.I160fs
LIHC	TCGA-G3-A3CJ-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1	chr3	56597711:56598153:56600621:56600787:56600977:56601081,	56600622	56600787	56600690	56600690	Frame_Shift_Del	A	-	p.K206fs
LIHC	TCGA-G3-A3CJ-01	CCDC66	ENST00000434467.1,ENST00000341455.6	chr3	56597711:56598153:56600621:56600768:56600977:56601081,	56600622	56600768	56600690	56600690	Frame_Shift_Del	A	-	p.K206fs
LIHC	TCGA-G3-A3CJ-01	CCDC66	ENST00000494672.1,ENST00000482673.1,ENST00000471681.1	chr3	56600978:56601081:56605208:56605330:56626997:56627089,56600978:56601081:56605208:56605330:56606364:56606456,	56605209	56605330	56605289	56605289	Frame_Shift_Del	A	-	p.K299fs
LIHC	TCGA-G3-A3CJ-01	FAM208A	ENST00000431842.2	chr3	56667926:56667994:56672733:56672793:56674013:56674158,56667071:56667871:56672733:56672793:56674013:56674124,	56672734	56672793	56672759	56672759	Frame_Shift_Del	C	-	p.G537fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF3	ENST00000477440.2	chr3	56916319:56916382:56992850:56992917:57069115:57069204,56916319:56916382:56992850:56992917:57112574:57112843,	56992851	56992917	56992897	56992897	Frame_Shift_Del	T	-	p.N29fs
LIHC	TCGA-G3-A3CJ-01	APPL1	ENST00000444459.1,ENST00000482800.1,ENST00000288266.3	chr3	57271519:57271579:57272072:57272144:57274492:57274580,	57272073	57272144	57272075	57272075	Frame_Shift_Del	T	-	p.R72fs
LIHC	TCGA-G3-A3CJ-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58067355:58067503:58080562:58080681:58081867:58081945,	58080563	58080681	58080649	58080649	Frame_Shift_Del	T	-	p.F292fs
LIHC	TCGA-G3-A3CJ-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58095736:58095897:58097517:58097608:58097875:58098045,	58097518	58097608	58097523	58097523	Frame_Shift_Del	C	-	p.I830fs
LIHC	TCGA-G3-A3CJ-01	FLNB	ENST00000357272.4,ENST00000429972.2,ENST00000493452.1,ENST00000419752.2,ENST00000295956.4,ENST00000348383.5,ENST00000490882.1,ENST00000358537.3	chr3	58095736:58095897:58097517:58097608:58097875:58098045,	58097518	58097608	58097549	58097549	Frame_Shift_Del	T	-	p.V839fs
LIHC	TCGA-G3-A3CJ-01	DNASE1L3	ENST00000394549.2,ENST00000483681.1,ENST00000461914.3,ENST00000318316.3	chr3	58186796:58186836:58190495:58190608:58193944:58194033,58186796:58186836:58190495:58190608:58191197:58191278,	58190496	58190608	58190502	58190502	Frame_Shift_Del	G	-	p.H143fs
LIHC	TCGA-G3-A3CJ-01	FAM3D	ENST00000358781.2	chr3	58622020:58622147:58622867:58622952:58625853:58625904,	58622868	58622952	58622910	58622910	Frame_Shift_Del	C	-	p.G139fs
LIHC	TCGA-G3-A3CJ-01	C3orf67	ENST00000472469.1	chr3	58855898:58856035:58870270:58870435:58899433:58899590,58855898:58856035:58870270:58870435:58923373:58923488,	58870271	58870435	58870310	58870310	Frame_Shift_Del	T	-	p.I21fs
LIHC	TCGA-G3-A3CJ-01	C3orf67	ENST00000482387.1,ENST00000295966.7	chr3	58870270:58870435:58899433:58899590:58923373:58923488,	58899434	58899590	58899536	58899536	Frame_Shift_Del	C	-	p.A25fs
LIHC	TCGA-G3-A3CJ-01	C3orf67	ENST00000468415.2	chr3	58870270:58870435:58899423:58899590:58923373:58923488,	58899424	58899590	58899536	58899536	Frame_Shift_Del	C	-	p.A25fs
LIHC	TCGA-G3-A3CJ-01	PTPRG	ENST00000474889.1,ENST00000295874.10	chr3	61734551:61734656:61975298:61975478:61989022:61989171,	61975299	61975478	61975343	61975343	Frame_Shift_Del	G	-	p.G80fs
LIHC	TCGA-G3-A3CJ-01	SNTN	ENST00000343837.3	chr3	63640437:63640472:63645400:63645540:63661225:63664696,63640437:63640472:63645400:63645540:63649612:63649736,	63645401	63645540	63645452	63645452	Frame_Shift_Del	T	-	p.I62fs
LIHC	TCGA-G3-A3CJ-01	SNTN	ENST00000343837.3	chr3	63640437:63640472:63645400:63645540:63661225:63664696,63640437:63640472:63645400:63645540:63649612:63649736,	63645401	63645540	63645488	63645488	Frame_Shift_Del	A	-	p.E74fs
LIHC	TCGA-G3-A3CJ-01	THOC7	ENST00000469584.1,ENST00000473141.1,ENST00000295899.5,ENST00000498422.1,ENST00000469153.1	chr3	63821976:63822034:63823651:63823738:63824047:63824175,	63823652	63823738	63823660	63823660	Frame_Shift_Del	T	-	p.N115fs
LIHC	TCGA-G3-A3CJ-01	ATXN7	ENST00000522345.1,ENST00000538065.1,ENST00000398590.3	chr3	63981985:63982159:63983296:63983363:63985125:63985230,	63983297	63983363	63983350	63983350	Frame_Shift_Del	C	-	p.S905fs
LIHC	TCGA-G3-A3CJ-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1	chr3	64527513:64527646:64532433:64532628:64536567:64536738,	64532434	64532628	64532491	64532491	Frame_Shift_Del	G	-	p.P1669fs
LIHC	TCGA-G3-A3CJ-01	ADAMTS9	ENST00000295903.4,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64600996:64601161:64601635:64601846:64606789:64606916,	64601636	64601846	64601787	64601787	Frame_Shift_Del	A	-	p.L958fs
LIHC	TCGA-G3-A3CJ-01	ADAMTS9	ENST00000295903.4,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64617130:64617226:64617483:64617601:64619147:64619284,	64617484	64617601	64617569	64617569	Frame_Shift_Del	T	-	p.K736fs
LIHC	TCGA-G3-A3CJ-01	LRIG1	ENST00000273261.3,ENST00000496559.2,ENST00000495037.1	chr3	66433405:66433825:66434414:66434696:66436404:66436725,	66434415	66434696	66434496	66434496	Frame_Shift_Del	T	-	p.I664fs
LIHC	TCGA-G3-A3CJ-01	LRIG1	ENST00000383703.3,ENST00000273261.3,ENST00000497721.1,ENST00000498287.1	chr3	66463349:66463438:66465343:66465487:66467552:66467690,	66465344	66465487	66465459	66465459	Frame_Shift_Del	G	-	p.L178fs
LIHC	TCGA-G3-A3CJ-01	KBTBD8	ENST00000417314.2	chr3	67048730:67048795:67049404:67049615:67053618:67053908,	67049405	67049615	67049522	67049522	Frame_Shift_Del	A	-	p.E19fs
LIHC	TCGA-G3-A3CJ-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69072295:69072471:69073205:69073331:69074710:69074863,	69073206	69073331	69073307	69073307	Frame_Shift_Del	T	-	p.T1016fs
LIHC	TCGA-G3-A3CJ-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69074710:69074863:69075146:69075248:69077050:69077143,	69075147	69075248	69075204	69075204	Frame_Shift_Del	G	-	p.R937fs
LIHC	TCGA-G3-A3CJ-01	TMF1	ENST00000543976.1,ENST00000398559.2,ENST00000488010.1	chr3	69075146:69075248:69077050:69077143:69077376:69077446,	69077051	69077143	69077090	69077090	Frame_Shift_Del	C	-	p.R909fs
LIHC	TCGA-G3-A3CJ-01	EIF4E3	ENST00000448225.1,ENST00000425534.3,ENST00000295612.3,ENST00000497838.1,ENST00000469524.1,ENST00000496214.2,ENST00000389826.3,ENST00000421769.2	chr3	71743047:71743092:71745610:71745671:71748764:71748859,	71745611	71745671	71745623	71745623	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-G3-A3CJ-01	PPP4R2	ENST00000295862.9,ENST00000394284.3,ENST00000356692.5	chr3	73110173:73110211:73112823:73112898:73113153:73113297,	73112824	73112898	73112867	73112867	Frame_Shift_Del	T	-	p.F155fs
LIHC	TCGA-G3-A3CJ-01	CNTN3	ENST00000263665.6	chr3	74414716:74414853:74418339:74418524:74419039:74419142,	74418340	74418524	74418488	74418488	Frame_Shift_Del	C	-	p.G266fs
LIHC	TCGA-G3-A3CJ-01	ROBO1	ENST00000467549.1,ENST00000495273.1	chr3	78795892:78796050:78987750:78988077:79067556:79067694,	78987751	78988077	78987936	78987936	Frame_Shift_Del	C	-	p.G66fs
LIHC	TCGA-G3-A3CJ-01	VGLL3	ENST00000398399.2	chr3	86987118:86996217:87017739:87018273:87027675:87027793,	87017740	87018273	87017839	87017839	Frame_Shift_Del	T	-	p.T280fs
LIHC	TCGA-G3-A3CJ-01	EPHA3	ENST00000336596.2	chr3	89499326:89499520:89521613:89521769:89528546:89528809,	89521614	89521769	89521717	89521717	Frame_Shift_Del	T	-	p.F932fs
LIHC	TCGA-G3-A3CJ-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93603571:93603740:93605179:93605347:93611776:93611966,	93605180	93605347	93605261	93605261	Frame_Shift_Del	A	-	p.F414fs
LIHC	TCGA-G3-A3CJ-01	CRYBG3	ENST00000182096.4	chr3	97614802:97614929:97617726:97617869:97617980:97618107,	97617727	97617869	97617859	97617859	Frame_Shift_Del	A	-	p.K664fs
LIHC	TCGA-G3-A3CJ-01	CRYBG3	ENST00000389622.2,ENST00000182096.4,ENST00000485253.1	chr3	97659991:97660150:97661127:97661287:97662069:97662414,	97661128	97661287	97661233	97661233	Frame_Shift_Del	A	-	p.K976fs
LIHC	TCGA-G3-A3CJ-01	ST3GAL6	ENST00000485145.1,ENST00000497621.1,ENST00000469105.1,ENST00000492254.1,ENST00000486334.2,ENST00000493953.1,ENST00000477899.1,ENST00000483910.1,ENST00000462152.1,ENST00000394162.1	chr3	98503788:98503884:98506879:98507066:98507169:98507246,	98506880	98507066	98506985	98506985	Frame_Shift_Del	C	-	p.D61fs
LIHC	TCGA-G3-A3CJ-01	DCBLD2	ENST00000326840.6,ENST00000326857.9	chr3	98539091:98539132:98541071:98541205:98541512:98541585,	98541072	98541205	98541113	98541113	Frame_Shift_Del	G	-	p.P263fs
LIHC	TCGA-G3-A3CJ-01	TBC1D23	ENST00000344949.5,ENST00000394144.4	chr3	99979855:99979915:99998492:99998604:100000585:100000691,	99998493	99998604	99998556	99998556	Frame_Shift_Del	A	-	p.I40fs
LIHC	TCGA-G3-A3CJ-01	TBC1D23	ENST00000344949.5,ENST00000486274.1,ENST00000394144.4	chr3	100002450:100002655:100009421:100009545:100013930:100014055,	100009422	100009545	100009513	100009513	Frame_Shift_Del	A	-	p.K190fs
LIHC	TCGA-G3-A3CJ-01	TMEM45A	ENST00000449609.1,ENST00000323523.4,ENST00000403410.1	chr3	100274052:100274245:100275603:100275816:100277248:100277371,	100275604	100275816	100275636	100275636	Frame_Shift_Del	C	-	p.P91fs
LIHC	TCGA-G3-A3CJ-01	ABI3BP	ENST00000383691.4,ENST00000470336.1,ENST00000495591.1,ENST00000284322.5,ENST00000487012.1,ENST00000471714.1	chr3	100473455:100473535:100484684:100484793:100489586:100489796,	100484685	100484793	100484696	100484696	Frame_Shift_Del	T	-	p.K1604fs
LIHC	TCGA-G3-A3CJ-01	ABI3BP	ENST00000383691.4,ENST00000471901.1,ENST00000495591.1,ENST00000284322.5,ENST00000487012.1,ENST00000471714.1	chr3	100511534:100511612:100513766:100513847:100515252:100515312,	100513767	100513847	100513802	100513802	Frame_Shift_Del	G	-	p.P1295fs
LIHC	TCGA-G3-A3CJ-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101051613:101051706:101056352:101056475:101058938:101059055,	101056353	101056475	101056383	101056383	Frame_Shift_Del	T	-	p.N818fs
LIHC	TCGA-G3-A3CJ-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101060489:101060623:101062529:101062798:101066715:101066757,	101062530	101062798	101062553	101062553	Frame_Shift_Del	T	-	p.M695fs
LIHC	TCGA-G3-A3CJ-01	SENP7	ENST00000314261.7,ENST00000394094.2,ENST00000358203.3	chr3	101212716:101212812:101219913:101219963:101231934:101232028,	101219914	101219963	101219943	101219943	Frame_Shift_Del	T	-	p.R21fs
LIHC	TCGA-G3-A3CJ-01	NXPE3	ENST00000477909.1,ENST00000273347.5,ENST00000491511.2,ENST00000422132.1	chr3	101504245:101504533:101520078:101520833:101525896:101525970,	101520079	101520833	101520529	101520529	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-G3-A3CJ-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491835	107491835	Frame_Shift_Del	C	-	p.P423fs
LIHC	TCGA-G3-A3CJ-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491988	107491988	Frame_Shift_Del	A	-	p.K475fs
LIHC	TCGA-G3-A3CJ-01	CD47	ENST00000355354.7,ENST00000361309.5	chr3	107789939:107790029:107798837:107799191:107809709:107809861,	107798838	107799191	107799165	107799165	Frame_Shift_Del	T	-	p.T25fs
LIHC	TCGA-G3-A3CJ-01	IFT57	ENST00000264538.3	chr3	107884281:107884340:107885700:107885832:107886639:107886711,	107885701	107885832	107885825	107885825	Frame_Shift_Del	A	-	p.L286fs
LIHC	TCGA-G3-A3CJ-01	MYH15	ENST00000273353.3	chr3	108179146:108179214:108181957:108182090:108183484:108183661,	108181958	108182090	108182056	108182056	Frame_Shift_Del	T	-	p.N609fs
LIHC	TCGA-G3-A3CJ-01	DZIP3	ENST00000495008.1,ENST00000463306.1,ENST00000361582.3,ENST00000479138.1	chr3	108361284:108361361:108363010:108363628:108365463:108365496,	108363011	108363628	108363319	108363319	Frame_Shift_Del	A	-	p.K485fs
LIHC	TCGA-G3-A3CJ-01	DZIP3	ENST00000463306.1,ENST00000361582.3	chr3	108403062:108403188:108405291:108405431:108406822:108406943,	108405292	108405431	108405308	108405308	Frame_Shift_Del	G	-	p.W1009fs
LIHC	TCGA-G3-A3CJ-01	TRAT1	ENST00000493604.1,ENST00000478830.1	chr3	108541618:108541781:108549516:108549627:108557780:108557814,	108549517	108549627	108549534	108549534	Frame_Shift_Del	T	-	p.F10fs
LIHC	TCGA-G3-A3CJ-01	DPPA4	ENST00000335658.6	chr3	109046371:109046871:109047736:109047935:109049370:109049659,	109047737	109047935	109047836	109047836	Frame_Shift_Del	T	-	p.K260fs
LIHC	TCGA-G3-A3CJ-01	DPPA4	ENST00000463966.1	chr3	109046371:109046871:109047736:109047928:109050580:109050631,	109047737	109047928	109047836	109047836	Frame_Shift_Del	T	-	p.K260fs
LIHC	TCGA-G3-A3CJ-01	PHLDB2	ENST00000498699.1,ENST00000431670.2,ENST00000412622.1	chr3	111578642:111578725:111602910:111604259:111632165:111632549,111578137:111578423:111602910:111604259:111632165:111632549,	111602911	111604259	111604135	111604135	Frame_Shift_Del	C	-	p.T404fs
LIHC	TCGA-G3-A3CJ-01	SLC35A5	ENST00000484995.1,ENST00000492406.1,ENST00000494706.1,ENST00000261034.2	chr3	112288017:112288116:112289386:112289517:112292735:112292803,	112289387	112289517	112289417	112289417	Frame_Shift_Del	C	-	p.S87fs
LIHC	TCGA-G3-A3CJ-01	SLC35A5	ENST00000261034.2	chr3	112292735:112292803:112299392:112299553:112300025:112300173,	112299393	112299553	112299436	112299436	Frame_Shift_Del	T	-	p.F158fs
LIHC	TCGA-G3-A3CJ-01	SLC35A5	ENST00000261034.2	chr3	112299392:112299553:112300025:112300173:112301517:112301577,	112300026	112300173	112300039	112300039	Frame_Shift_Del	T	-	p.F360fs
LIHC	TCGA-G3-A3CJ-01	CCDC80	ENST00000461431.1,ENST00000206423.3,ENST00000439685.2	chr3	112337814:112337951:112348959:112349116:112356874:112356944,	112348960	112349116	112348978	112348978	Frame_Shift_Del	T	-	p.I673fs
LIHC	TCGA-G3-A3CJ-01	BOC	ENST00000479182.1,ENST00000355385.3,ENST00000495514.1,ENST00000466059.1,ENST00000273395.4	chr3	112999877:113000000:113002257:113002479:113003181:113003414,	113002258	113002479	113002477	113002477	Frame_Shift_Del	A	-	p.Q884fs
LIHC	TCGA-G3-A3CJ-01	BOC	ENST00000488486.1	chr3	113003631:113003705:113004285:113004412:113005521:113005583,	113004286	113004412	113004396	113004396	Frame_Shift_Del	C	-	p.D1047fs
LIHC	TCGA-G3-A3CJ-01	BOC	ENST00000479182.1,ENST00000355385.3,ENST00000495514.1,ENST00000466059.1,ENST00000273395.4	chr3	113003631:113003705:113004218:113004412:113005521:113005583,	113004219	113004412	113004396	113004396	Frame_Shift_Del	C	-	p.D1047fs
LIHC	TCGA-G3-A3CJ-01	SIDT1	ENST00000463226.1,ENST00000393830.3,ENST00000264852.4	chr3	113342469:113342580:113344948:113345062:113346492:113346688,	113344949	113345062	113345048	113345048	Frame_Shift_Del	T	-	p.F804fs
LIHC	TCGA-G3-A3CJ-01	GRAMD1C	ENST00000452134.2,ENST00000358160.4,ENST00000479212.1	chr3	113594330:113594434:113595011:113595107:113601598:113601679,	113595012	113595107	113595052	113595052	Frame_Shift_Del	A	-	p.E135fs
LIHC	TCGA-G3-A3CJ-01	TIGIT	ENST00000481065.1,ENST00000383671.3,ENST00000486257.1	chr3	114012874:114012969:114014391:114014721:114018443:114018550,	114014392	114014721	114014640	114014640	Frame_Shift_Del	G	-	p.G171fs
LIHC	TCGA-G3-A3CJ-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114069198	114069198	Frame_Shift_Del	T	-	p.K503fs
LIHC	TCGA-G3-A3CJ-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114070093	114070093	Frame_Shift_Del	G	-	p.R205fs
LIHC	TCGA-G3-A3CJ-01	UPK1B	ENST00000497685.1,ENST00000460625.1,ENST00000264234.3	chr3	118913065:118913245:118917903:118917987:118922763:118922959,	118917904	118917987	118917947	118917947	Frame_Shift_Del	G	-	p.W231fs
LIHC	TCGA-G3-A3CJ-01	B4GALT4	ENST00000480814.1,ENST00000483209.1,ENST00000393765.2,ENST00000467604.1	chr3	118945655:118945888:118948693:118949091:118953991:118954074,118945835:118945888:118948693:118949091:118955699:118955917,	118948694	118949091	118948771	118948771	Frame_Shift_Del	T	-	p.K59fs
LIHC	TCGA-G3-A3CJ-01	HGD	ENST00000283871.5,ENST00000492108.1,ENST00000476082.2	chr3	120365819:120365899:120366723:120366758:120369620:120369685,	120366724	120366758	120366751	120366751	Frame_Shift_Del	A	-	p.Y148fs
LIHC	TCGA-G3-A3CJ-01	GTF2E1	ENST00000283875.5	chr3	120461608:120461641:120469369:120469847:120489574:120489776,	120469370	120469847	120469818	120469818	Frame_Shift_Del	A	-	p.E140fs
LIHC	TCGA-G3-A3CJ-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000471262.1,ENST00000497029.1,ENST00000492541.1	chr3	120952462:120952535:120957817:120957965:120959286:120959354,	120957818	120957965	120957942	120957942	Frame_Shift_Del	A	-	p.K438fs
LIHC	TCGA-G3-A3CJ-01	STXBP5L	ENST00000273666.6,ENST00000471262.1,ENST00000497029.1,ENST00000492541.1	chr3	120998651:120998803:121001112:121001184:121037321:121037387,	121001113	121001184	121001118	121001118	Frame_Shift_Del	T	-	p.F706fs
LIHC	TCGA-G3-A3CJ-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000492541.1	chr3	121037321:121037387:121097562:121097733:121100139:121100379,	121097563	121097733	121097686	121097686	Frame_Shift_Del	C	-	p.A791fs
LIHC	TCGA-G3-A3CJ-01	POLQ	ENST00000264233.5	chr3	121158930:121158963:121168161:121168273:121186365:121186487,121158930:121158963:121168161:121168273:121178896:121179081,	121168162	121168273	121168175	121168175	Frame_Shift_Del	T	-	p.K2417fs
LIHC	TCGA-G3-A3CJ-01	POLQ	ENST00000474243.1	chr3	121187151:121187278:121195386:121195580:121200418:121200443,	121195387	121195580	121195416	121195416	Frame_Shift_Del	A	-	p.S2126fs
LIHC	TCGA-G3-A3CJ-01	POLQ	ENST00000264233.5	chr3	121200418:121200659:121202232:121202429:121203887:121204031,	121202233	121202429	121202381	121202381	Frame_Shift_Del	A	-	p.L1941fs
LIHC	TCGA-G3-A3CJ-01	HCLS1	ENST00000314583.3,ENST00000473883.1	chr3	121355280:121355336:121355992:121356103:121361773:121361828,	121355993	121356103	121356057	121356057	Frame_Shift_Del	T	-	p.K167fs
LIHC	TCGA-G3-A3CJ-01	IQCB1	ENST00000460108.1,ENST00000349820.6,ENST00000393650.3,ENST00000310864.6	chr3	121526190:121526290:121527762:121527856:121544897:121545027,	121527763	121527856	121527845	121527845	Frame_Shift_Del	T	-	p.K135fs
LIHC	TCGA-G3-A3CJ-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573634	121573634	Frame_Shift_Del	A	-	p.E101fs
LIHC	TCGA-G3-A3CJ-01	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000482356.1,ENST00000478741.1	chr3	121810447:121810497:121822358:121822694:121825044:121825165,	121822359	121822694	121822460	121822460	Frame_Shift_Del	T	-	p.F56fs
LIHC	TCGA-G3-A3CJ-01	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000482356.1,ENST00000478741.1	chr3	121810447:121810497:121822358:121822694:121825044:121825165,	121822359	121822694	121822637	121822637	Frame_Shift_Del	A	-	p.K116fs
LIHC	TCGA-G3-A3CJ-01	FAM162A	ENST00000469967.1,ENST00000232125.5,ENST00000477892.1	chr3	122121610:122121729:122123104:122123210:122126127:122126236,	122123105	122123210	122123149	122123149	Frame_Shift_Del	A	-	p.K69fs
LIHC	TCGA-G3-A3CJ-01	DTX3L	ENST00000383661.3	chr3	122283273:122283460:122284705:122284917:122289301:122289519,	122284706	122284917	122284824	122284824	Frame_Shift_Del	T	-	p.S103fs
LIHC	TCGA-G3-A3CJ-01	DTX3L	ENST00000296161.4	chr3	122284705:122284917:122287335:122288871:122289301:122289382,	122287336	122288871	122287921	122287921	Frame_Shift_Del	T	-	p.F329fs
LIHC	TCGA-G3-A3CJ-01	DTX3L	ENST00000296161.4	chr3	122284705:122284917:122287335:122288871:122289301:122289382,	122287336	122288871	122288294	122288294	Frame_Shift_Del	T	-	p.L455fs
LIHC	TCGA-G3-A3CJ-01	DTX3L	ENST00000296161.4	chr3	122284705:122284917:122287335:122288871:122289301:122289382,	122287336	122288871	122288435	122288435	Frame_Shift_Del	C	-	p.A500fs
LIHC	TCGA-G3-A3CJ-01	DTX3L	ENST00000296161.4	chr3	122287335:122288871:122289301:122289519:122290524:122290594,	122289302	122289519	122289423	122289423	Frame_Shift_Del	T	-	p.I686fs
LIHC	TCGA-G3-A3CJ-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345762	122345762	Frame_Shift_Del	A	-	p.L440fs
LIHC	TCGA-G3-A3CJ-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122420127	122420127	Frame_Shift_Del	A	-	p.E909fs
LIHC	TCGA-G3-A3CJ-01	SEC22A	ENST00000473494.2,ENST00000309934.4,ENST00000492595.1	chr3	122964745:122964861:122978370:122978436:122990368:122990511,	122978371	122978436	122978404	122978404	Frame_Shift_Del	T	-	p.F232fs
LIHC	TCGA-G3-A3CJ-01	ADCY5	ENST00000462833.1,ENST00000309879.5,ENST00000491190.1	chr3	123003424:123003583:123005531:123005656:123008596:123008801,	123005532	123005656	123005627	123005627	Frame_Shift_Del	C	-	p.V1188fs
LIHC	TCGA-G3-A3CJ-01	CCDC14	ENST00000409657.1,ENST00000488653.2,ENST00000409697.3	chr3	123667792:123667979:123674689:123674812:123679990:123680055,123667792:123667979:123674689:123674812:123674892:123674962,	123674690	123674812	123674735	123674735	Frame_Shift_Del	T	-	p.R151fs
LIHC	TCGA-G3-A3CJ-01	CCDC14	ENST00000495381.1	chr3	123667792:123667979:123674689:123675642:123679990:123680055,	123674690	123675642	123674735	123674735	Frame_Shift_Del	T	-	p.R151fs
LIHC	TCGA-G3-A3CJ-01	CCDC14	ENST00000438440.2	chr3	123667792:123667979:123674689:123674962:123675201:123675274,	123674690	123674962	123674735	123674735	Frame_Shift_Del	T	-	p.R151fs
LIHC	TCGA-G3-A3CJ-01	CCDC14	ENST00000438440.2,ENST00000488653.2,ENST00000433542.2,ENST00000409697.3	chr3	123674923:123674962:123675201:123675274:123675586:123675642,	123675202	123675274	123675247	123675247	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-G3-A3CJ-01	CCDC14	ENST00000495381.1	chr3	123667792:123667979:123674689:123675642:123679990:123680055,	123674690	123675642	123675247	123675247	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-G3-A3CJ-01	CCDC14	ENST00000495381.1	chr3	123667792:123667979:123674689:123675642:123679990:123680055,	123674690	123675642	123675607	123675607	Frame_Shift_Del	T	-	p.K70fs
LIHC	TCGA-G3-A3CJ-01	CCDC14	ENST00000438440.2,ENST00000488653.2,ENST00000433542.2,ENST00000409697.3	chr3	123675201:123675274:123675586:123675642:123679990:123680055,	123675587	123675642	123675607	123675607	Frame_Shift_Del	T	-	p.K70fs
LIHC	TCGA-G3-A3CJ-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124153180:124153372:124157734:124157884:124160791:124160906,	124157735	124157884	124157852	124157852	Frame_Shift_Del	A	-	p.K1054fs
LIHC	TCGA-G3-A3CJ-01	KALRN	ENST00000354186.4,ENST00000360013.3	chr3	124215157:124215260:124281689:124281936:124351266:124351445,	124281690	124281936	124281821	124281821	Frame_Shift_Del	G	-	p.L1687fs
LIHC	TCGA-G3-A3CJ-01	UMPS	ENST00000536109.1,ENST00000467167.1	chr3	124449298:124449474:124453939:124454093:124456414:124457086,124449298:124449474:124453939:124454093:124456761:124457086,124450352:124450451:124453939:124454093:124456414:124457086,	124453940	124454093	124453950	124453950	Frame_Shift_Del	T	-	p.I56fs
LIHC	TCGA-G3-A3CJ-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124456812	124456812	Frame_Shift_Del	C	-	p.I236fs
LIHC	TCGA-G3-A3CJ-01	UMPS	ENST00000474588.1	chr3	124453939:124454093:124456761:124457086:124458870:124459046,	124456762	124457086	124456812	124456812	Frame_Shift_Del	C	-	p.I236fs
LIHC	TCGA-G3-A3CJ-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124456812	124456812	Frame_Shift_Del	C	-	p.I236fs
LIHC	TCGA-G3-A3CJ-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124457059	124457059	Frame_Shift_Del	G	-	p.G319fs
LIHC	TCGA-G3-A3CJ-01	UMPS	ENST00000474588.1	chr3	124453939:124454093:124456761:124457086:124458870:124459046,	124456762	124457086	124457059	124457059	Frame_Shift_Del	G	-	p.G319fs
LIHC	TCGA-G3-A3CJ-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124457059	124457059	Frame_Shift_Del	G	-	p.G319fs
LIHC	TCGA-G3-A3CJ-01	MUC13	ENST00000478191.1,ENST00000311075.3	chr3	124635182:124635327:124639080:124639136:124641043:124641150,	124639081	124639136	124639109	124639109	Frame_Shift_Del	A	-	p.Y257fs
LIHC	TCGA-G3-A3CJ-01	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1,ENST00000461616.1,ENST00000483944.1	chr3	124810282:124810400:124810944:124811042:124826324:124826421,	124810945	124811042	124811023	124811023	Frame_Shift_Del	C	-	p.R604fs
LIHC	TCGA-G3-A3CJ-01	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1	chr3	124810944:124811042:124826324:124826970:124829032:124829179,	124826325	124826970	124826866	124826866	Frame_Shift_Del	G	-	p.T417fs
LIHC	TCGA-G3-A3CJ-01	SLC12A8	ENST00000393469.4,ENST00000479352.1,ENST00000473262.1,ENST00000423114.2,ENST00000430155.2,ENST00000469902.1	chr3	124810944:124811042:124826324:124826970:124829032:124829179,	124826325	124826970	124826902	124826902	Frame_Shift_Del	A	-	p.F405fs
LIHC	TCGA-G3-A3CJ-01	SLC12A8	ENST00000393469.4,ENST00000314584.7,ENST00000473262.1,ENST00000423114.2,ENST00000469902.1	chr3	124839442:124839530:124854512:124854626:124906080:124906272,124839442:124839530:124854512:124854626:124896586:124896808,	124854513	124854626	124854548	124854548	Frame_Shift_Del	A	-	p.F263fs
LIHC	TCGA-G3-A3CJ-01	SNX4	ENST00000473417.1	chr3	125216902:125217038:125223466:125223588:125238875:125239025,	125223467	125223588	125223529	125223529	Frame_Shift_Del	T	-	p.K67fs
LIHC	TCGA-G3-A3CJ-01	ALDH1L1	ENST00000476245.1	chr3	125865698:125865769:125869248:125869799:125872286:125872424,	125869249	125869799	125869338	125869338	Frame_Shift_Del	T	-	p.M299fs
LIHC	TCGA-G3-A3CJ-01	ALDH1L1	ENST00000472186.1,ENST00000473607.1,ENST00000273450.3,ENST00000413612.1,ENST00000452905.2,ENST00000393431.2,ENST00000393434.2	chr3	125865698:125865769:125869248:125869374:125872286:125872424,	125869249	125869374	125869338	125869338	Frame_Shift_Del	T	-	p.M299fs
LIHC	TCGA-G3-A3CJ-01	ZXDC	ENST00000389709.3	chr3	126160607:126160789:126178495:126178580:126180377:126181063,	126178496	126178580	126178506	126178506	Frame_Shift_Del	C	-	p.G734fs
LIHC	TCGA-G3-A3CJ-01	UROC1	ENST00000290868.2,ENST00000383579.3	chr3	126202211:126202311:126207040:126207122:126208118:126208218,	126207041	126207122	126207050	126207050	Frame_Shift_Del	C	-	p.G594fs
LIHC	TCGA-G3-A3CJ-01	UROC1	ENST00000290868.2,ENST00000383579.3	chr3	126218899:126218997:126219537:126219717:126220060:126220123,	126219538	126219717	126219637	126219637	Frame_Shift_Del	G	-	p.P349fs
LIHC	TCGA-G3-A3CJ-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126710226:126710409:126722172:126722313:126723453:126723554,	126722173	126722313	126722247	126722247	Frame_Shift_Del	C	-	p.S484fs
LIHC	TCGA-G3-A3CJ-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126726641:126726756:126730800:126731001:126732862:126732959,	126730801	126731001	126730854	126730854	Frame_Shift_Del	A	-	p.V722fs
LIHC	TCGA-G3-A3CJ-01	EEFSEC	ENST00000254730.6	chr3	128060075:128060732:128077059:128077216:128126911:128127485,	128077060	128077216	128077185	128077185	Frame_Shift_Del	C	-	p.G523fs
LIHC	TCGA-G3-A3CJ-01	EFCAB12	ENST00000514900.1,ENST00000505956.1,ENST00000503498.1,ENST00000326085.3	chr3	129123092:129123246:129127487:129127701:129130000:129130197,	129127488	129127701	129127683	129127683	Frame_Shift_Del	G	-	p.Q352fs
LIHC	TCGA-G3-A3CJ-01	MBD4	ENST00000509828.1,ENST00000429544.2,ENST00000393278.2,ENST00000249910.1	chr3	129150328:129150421:129151345:129151449:129151940:129152090,	129151346	129151449	129151366	129151366	Frame_Shift_Del	A	-	p.C543fs
LIHC	TCGA-G3-A3CJ-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155930	129155930	Frame_Shift_Del	T	-	p.K186fs
LIHC	TCGA-G3-A3CJ-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155930	129155930	Frame_Shift_Del	T	-	p.K186fs
LIHC	TCGA-G3-A3CJ-01	IFT122	ENST00000296266.3,ENST00000507564.1	chr3	129177441:129177520:129179696:129179849:129180070:129180120,	129179697	129179849	129179752	129179752	Frame_Shift_Del	A	-	p.K110fs
LIHC	TCGA-G3-A3CJ-01	IFT122	ENST00000511498.1,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000504021.1,ENST00000440957.2,ENST00000349441.2	chr3	129182402:129182469:129183477:129183624:129188184:129188260,	129183478	129183624	129183577	129183577	Frame_Shift_Del	G	-	p.P223fs
LIHC	TCGA-G3-A3CJ-01	TMCC1	ENST00000393238.3	chr3	129390091:129390107:129546645:129547351:129551616:129551669,	129546646	129547351	129547053	129547053	Frame_Shift_Del	G	-	p.Q57fs
LIHC	TCGA-G3-A3CJ-01	COL6A6	ENST00000358511.6	chr3	130363834:130363846:130367912:130368406:130377519:130377616,	130367913	130368406	130367926	130367926	Frame_Shift_Del	C	-	p.C1751fs
LIHC	TCGA-G3-A3CJ-01	ATP2C1	ENST00000422190.2,ENST00000513801.1,ENST00000533801.2,ENST00000505330.1,ENST00000504571.1,ENST00000328560.8,ENST00000359644.3,ENST00000504948.1,ENST00000428331.2,ENST00000508660.1,ENST00000514654.1,ENST00000510168.1,ENST00000508532.1,ENST00000504381.1,ENST00000393221.4,ENST00000504612.1,ENST00000507488.2	chr3	130686231:130686263:130688135:130688240:130694175:130694332,	130688136	130688240	130688200	130688200	Frame_Shift_Del	A	-	p.Q458fs
LIHC	TCGA-G3-A3CJ-01	ATP2C1	ENST00000422190.2,ENST00000513801.1,ENST00000533801.2,ENST00000505330.1,ENST00000328560.8,ENST00000359644.3,ENST00000504948.1,ENST00000428331.2,ENST00000514654.1,ENST00000510168.1,ENST00000508532.1,ENST00000504381.1,ENST00000393221.4,ENST00000504612.1,ENST00000507488.2	chr3	130694274:130694332:130698092:130698263:130699425:130699523,	130698093	130698263	130698148	130698148	Frame_Shift_Del	G	-	p.V542fs
LIHC	TCGA-G3-A3CJ-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130742919	130742919	Frame_Shift_Del	T	-	p.N411fs
LIHC	TCGA-G3-A3CJ-01	ASTE1	ENST00000504964.1	chr3	130737349:130737560:130742848:130743082:130744007:130744175,	130742849	130743082	130742919	130742919	Frame_Shift_Del	T	-	p.N411fs
LIHC	TCGA-G3-A3CJ-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130744044	130744044	Frame_Shift_Del	A	-	p.F36fs
LIHC	TCGA-G3-A3CJ-01	NEK11	ENST00000507910.1,ENST00000510688.1,ENST00000510926.1,ENST00000514915.1,ENST00000429253.2,ENST00000510474.1,ENST00000383366.4,ENST00000508196.1,ENST00000412440.2,ENST00000356918.4,ENST00000511262.1,ENST00000426022.2	chr3	130852673:130852800:130871231:130871381:130871474:130871547,	130871232	130871381	130871310	130871310	Frame_Shift_Del	A	-	p.L242fs
LIHC	TCGA-G3-A3CJ-01	NEK11	ENST00000510769.1	chr3	130852673:130852800:130881251:130881371:130884269:130884363,	130881252	130881371	130881254	130881254	Frame_Shift_Del	A	-	p.Q322fs
LIHC	TCGA-G3-A3CJ-01	NEK11	ENST00000510823.1,ENST00000507910.1,ENST00000510688.1,ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000383366.4,ENST00000508196.1,ENST00000356918.4,ENST00000511262.1	chr3	130884273:130884363:130887673:130887781:130889616:130889731,	130887674	130887781	130887777	130887777	Frame_Shift_Del	A	-	p.E429fs
LIHC	TCGA-G3-A3CJ-01	NEK11	ENST00000510769.1,ENST00000514915.1,ENST00000429253.2,ENST00000510474.1,ENST00000383366.4,ENST00000508196.1,ENST00000412440.2	chr3	130962279:130962340:130992321:130992418:131068400:131068620,	130992322	130992418	130992373	130992373	Frame_Shift_Del	T	-	p.I558fs
LIHC	TCGA-G3-A3CJ-01	ACPP	ENST00000475741.1,ENST00000351273.7,ENST00000489084.1,ENST00000493235.1	chr3	132036280:132036420:132047110:132047206:132050490:132050577,	132047111	132047206	132047194	132047194	Frame_Shift_Del	C	-	p.G68fs
LIHC	TCGA-G3-A3CJ-01	DNAJC13	ENST00000260818.6,ENST00000486798.1	chr3	132179093:132179201:132179893:132180049:132181310:132181367,	132179894	132180049	132180038	132180038	Frame_Shift_Del	A	-	p.K568fs
LIHC	TCGA-G3-A3CJ-01	DNAJC13	ENST00000260818.6	chr3	132212987:132213103:132213931:132214010:132215371:132215507,	132213932	132214010	132213976	132213976	Frame_Shift_Del	A	-	p.Q1329fs
LIHC	TCGA-G3-A3CJ-01	DNAJC13	ENST00000260818.6	chr3	132212987:132213103:132213931:132214010:132215371:132215507,	132213932	132214010	132213983	132213983	Frame_Shift_Del	C	-	p.Y1331fs
LIHC	TCGA-G3-A3CJ-01	DNAJC13	ENST00000260818.6	chr3	132212987:132213103:132213931:132214010:132215371:132215507,	132213932	132214010	132214005	132214005	Frame_Shift_Del	G	-	p.G1339fs
LIHC	TCGA-G3-A3CJ-01	DNAJC13	ENST00000260818.6	chr3	132222057:132222225:132224145:132224259:132226080:132226197,	132224146	132224259	132224243	132224243	Frame_Shift_Del	A	-	p.E1661fs
LIHC	TCGA-G3-A3CJ-01	DNAJC13	ENST00000260818.6	chr3	132222057:132222225:132224145:132224259:132226080:132226197,	132224146	132224259	132224254	132224254	Frame_Shift_Del	A	-	p.K1666fs
LIHC	TCGA-G3-A3CJ-01	UBA5	ENST00000468227.1,ENST00000264991.4,ENST00000494112.1,ENST00000356232.4,ENST00000494238.2	chr3	132394449:132394524:132394660:132394767:132395286:132395597,	132394661	132394767	132394704	132394704	Frame_Shift_Del	T	-	p.N356fs
LIHC	TCGA-G3-A3CJ-01	UBA5	ENST00000468227.1,ENST00000264991.4,ENST00000494112.1,ENST00000356232.4,ENST00000494238.2	chr3	132394449:132394524:132394660:132394767:132395286:132395597,	132394661	132394767	132394761	132394761	Frame_Shift_Del	A	-	p.P375fs
LIHC	TCGA-G3-A3CJ-01	NPHP3	ENST00000326682.8,ENST00000474871.1,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132400757:132400934:132401546:132401662:132402242:132402368,	132401547	132401662	132401614	132401614	Frame_Shift_Del	A	-	p.Y1249fs
LIHC	TCGA-G3-A3CJ-01	NPHP3	ENST00000474871.1	chr3	132402242:132402368:132403397:132405231:132405994:132406070,	132403398	132405231	132403483	132403483	Frame_Shift_Del	A	-	p.L1162fs
LIHC	TCGA-G3-A3CJ-01	NPHP3	ENST00000326682.8,ENST00000471702.1,ENST00000337331.5,ENST00000465756.1,ENST00000490993.1	chr3	132402242:132402368:132403397:132403638:132405103:132405231,	132403398	132403638	132403483	132403483	Frame_Shift_Del	A	-	p.L1162fs
LIHC	TCGA-G3-A3CJ-01	NPHP3	ENST00000474871.1	chr3	132402242:132402368:132403397:132405231:132405994:132406070,	132403398	132405231	132405134	132405134	Frame_Shift_Del	C	-	p.G1100fs
LIHC	TCGA-G3-A3CJ-01	NPHP3	ENST00000326682.8,ENST00000471702.1,ENST00000337331.5,ENST00000469232.1,ENST00000465756.1,ENST00000490993.1	chr3	132419177:132419292:132420273:132420377:132423041:132423215,	132420274	132420377	132420283	132420283	Frame_Shift_Del	A	-	p.L540fs
LIHC	TCGA-G3-A3CJ-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133098904	133098904	Frame_Shift_Del	C	-	p.P117fs
LIHC	TCGA-G3-A3CJ-01	TOPBP1	ENST00000260810.5	chr3	133336003:133336170:133337056:133337277:133338998:133339191,	133337057	133337277	133337094	133337094	Frame_Shift_Del	A	-	p.F1185fs
LIHC	TCGA-G3-A3CJ-01	TOPBP1	ENST00000260810.5	chr3	133336003:133336170:133337056:133337277:133338998:133339191,	133337057	133337277	133337230	133337230	Frame_Shift_Del	T	-	p.N1140fs
LIHC	TCGA-G3-A3CJ-01	TOPBP1	ENST00000260810.5	chr3	133368777:133368787:133371306:133371473:133372188:133372312,	133371307	133371473	133371359	133371359	Frame_Shift_Del	T	-	p.N346fs
LIHC	TCGA-G3-A3CJ-01	TOPBP1	ENST00000572787.1	chr3	133368777:133368787:133371306:133371391:133372188:133372312,	133371307	133371391	133371359	133371359	Frame_Shift_Del	T	-	p.N346fs
LIHC	TCGA-G3-A3CJ-01	TOPBP1	ENST00000508524.1	chr3	133368777:133368787:133371306:133371458:133372188:133372312,	133371307	133371458	133371359	133371359	Frame_Shift_Del	T	-	p.N346fs
LIHC	TCGA-G3-A3CJ-01	AMOTL2	ENST00000506326.1,ENST00000249883.5	chr3	134076392:134076605:134077381:134077561:134078124:134078345,	134077382	134077561	134077519	134077519	Frame_Shift_Del	G	-	p.P773fs
LIHC	TCGA-G3-A3CJ-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000513145.1	chr3	134076392:134076605:134077381:134077558:134078124:134078345,	134077382	134077558	134077519	134077519	Frame_Shift_Del	G	-	p.P773fs
LIHC	TCGA-G3-A3CJ-01	CEP63	ENST00000354446.3,ENST00000337090.3,ENST00000513612.2,ENST00000508778.1,ENST00000383229.3,ENST00000511574.1,ENST00000332047.5,ENST00000606977.1	chr3	134250690:134250782:134251619:134251742:134255996:134256043,	134251620	134251742	134251689	134251689	Frame_Shift_Del	A	-	p.K130fs
LIHC	TCGA-G3-A3CJ-01	CEP63	ENST00000337090.3,ENST00000513612.2,ENST00000606977.1	chr3	134270770:134270854:134276983:134277189:134277991:134278147,	134276984	134277189	134277126	134277126	Frame_Shift_Del	A	-	p.Q537fs
LIHC	TCGA-G3-A3CJ-01	EPHB1	ENST00000493838.1,ENST00000398015.3	chr3	134920315:134920531:134959989:134960139:134967157:134967351,	134959990	134960139	134960104	134960104	Frame_Shift_Del	G	-	p.G821fs
LIHC	TCGA-G3-A3CJ-01	PCCB	ENST00000483687.1	chr3	135975396:135975465:135980793:135980907:136002678:136002743,	135980794	135980907	135980848	135980848	Frame_Shift_Del	G	-	p.G163fs
LIHC	TCGA-G3-A3CJ-01	IL20RB	ENST00000329582.4,ENST00000475972.1,ENST00000491483.1	chr3	136708282:136708407:136710779:136710930:136714255:136714348,	136710780	136710930	136710789	136710789	Frame_Shift_Del	A	-	p.K181fs
LIHC	TCGA-G3-A3CJ-01	DZIP1L	ENST00000490472.1,ENST00000469243.1,ENST00000327532.2	chr3	137811224:137811386:137813703:137813825:137816604:137816689,	137813704	137813825	137813748	137813748	Frame_Shift_Del	C	-	p.E222fs
LIHC	TCGA-G3-A3CJ-01	DBR1	ENST00000505015.2,ENST00000260803.4,ENST00000477557.3	chr3	137882190:137882336:137882619:137882700:137885922:137886147,	137882620	137882700	137882647	137882647	Frame_Shift_Del	T	-	p.K256fs
LIHC	TCGA-G3-A3CJ-01	NME9	ENST00000536478.1,ENST00000478220.1,ENST00000474690.1,ENST00000317876.4,ENST00000383180.2,ENST00000492993.1	chr3	138034368:138034485:138036989:138037061:138038319:138038422,138033173:138033249:138036989:138037061:138038319:138038422,	138036990	138037061	138036995	138036995	Frame_Shift_Del	A	-	p.Y66fs
LIHC	TCGA-G3-A3CJ-01	ESYT3	ENST00000289135.4,ENST00000486831.1,ENST00000389567.4,ENST00000490835.1	chr3	138176409:138176486:138178028:138178095:138178786:138178876,	138178029	138178095	138178036	138178036	Frame_Shift_Del	G	-	p.G197fs
LIHC	TCGA-G3-A3CJ-01	ESYT3	ENST00000486831.1,ENST00000389567.4,ENST00000490835.1	chr3	138179452:138179508:138180927:138181048:138183186:138183357,	138180928	138181048	138180963	138180963	Frame_Shift_Del	C	-	p.A277fs
LIHC	TCGA-G3-A3CJ-01	ESYT3	ENST00000486831.1,ENST00000389567.4,ENST00000490835.1	chr3	138179452:138179508:138180927:138181048:138183186:138183357,	138180928	138181048	138181009	138181009	Frame_Shift_Del	G	-	p.K292fs
LIHC	TCGA-G3-A3CJ-01	ESYT3	ENST00000486831.1,ENST00000389567.4,ENST00000490835.1	chr3	138179452:138179508:138180927:138181048:138183186:138183357,	138180928	138181048	138181036	138181036	Frame_Shift_Del	C	-	p.F301fs
LIHC	TCGA-G3-A3CJ-01	CEP70	ENST00000489254.1	chr3	138251355:138251412:138256019:138256189:138289159:138289340,138251355:138251412:138256019:138256189:138310695:138310798,	138256020	138256189	138256144	138256144	Frame_Shift_Del	T	-	p.T171fs
LIHC	TCGA-G3-A3CJ-01	CEP70	ENST00000489254.1	chr3	138251355:138251412:138256019:138256189:138289159:138289340,138251355:138251412:138256019:138256189:138310695:138310798,	138256020	138256189	138256163	138256163	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138376531:138376677:138382747:138382871:138383877:138384045,	138382748	138382871	138382756	138382756	Frame_Shift_Del	T	-	p.T930fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000462898.1,ENST00000289153.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138383877:138384045:138400808:138400887:138402519:138402629,	138400809	138400887	138400858	138400858	Frame_Shift_Del	T	-	p.M819fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000544716.1,ENST00000469284.2	chr3	138383877:138384045:138400808:138400902:138402519:138402629,	138400809	138400902	138400858	138400858	Frame_Shift_Del	T	-	p.M819fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138402519:138402629:138403466:138403645:138407716:138407811,	138403467	138403645	138403498	138403498	Frame_Shift_Del	G	-	p.L762fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1	chr3	138413627:138413749:138417748:138417937:138423284:138423335,	138417749	138417937	138417767	138417767	Frame_Shift_Del	T	-	p.K584fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000462898.1,ENST00000289153.2,ENST00000477593.1	chr3	138417748:138417937:138426000:138426131:138431049:138431095,138423284:138423335:138426000:138426131:138431049:138431095,	138426001	138426131	138426071	138426071	Frame_Shift_Del	T	-	p.N487fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000462898.1	chr3	138456548:138456728:138461399:138461597:138474595:138474821,	138461400	138461597	138461448	138461448	Frame_Shift_Del	T	-	p.K191fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000289153.2,ENST00000477593.1	chr3	138456548:138456728:138461399:138461623:138474595:138474821,	138461400	138461623	138461448	138461448	Frame_Shift_Del	T	-	p.K191fs
LIHC	TCGA-G3-A3CJ-01	PIK3CB	ENST00000289153.2,ENST00000477593.1	chr3	138461399:138461623:138474595:138474821:138478014:138478185,	138474596	138474821	138474678	138474678	Frame_Shift_Del	A	-	p.F105fs
LIHC	TCGA-G3-A3CJ-01	MRPS22	ENST00000478464.1	chr3	139062957:139063040:139065719:139065886:139067001:139067166,139063406:139063560:139065719:139065886:139067001:139067166,	139065720	139065886	139065880	139065880	Frame_Shift_Del	G	-	p.L111fs
LIHC	TCGA-G3-A3CJ-01	MRPS22	ENST00000465373.1	chr3	139062880:139063040:139065692:139065886:139067001:139067166,	139065693	139065886	139065880	139065880	Frame_Shift_Del	G	-	p.L111fs
LIHC	TCGA-G3-A3CJ-01	MRPS22	ENST00000465056.1,ENST00000498505.1	chr3	139062957:139063040:139065722:139065886:139067001:139067166,	139065723	139065886	139065880	139065880	Frame_Shift_Del	G	-	p.L111fs
LIHC	TCGA-G3-A3CJ-01	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141292785:141292909:141295841:141295948:141299209:141299287,	141295842	141295948	141295916	141295916	Frame_Shift_Del	C	-	p.P520fs
LIHC	TCGA-G3-A3CJ-01	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141292785:141292909:141295841:141295948:141299209:141299287,	141295842	141295948	141295924	141295924	Frame_Shift_Del	T	-	p.T522fs
LIHC	TCGA-G3-A3CJ-01	ATP1B3	ENST00000539728.1,ENST00000465172.1,ENST00000482635.1,ENST00000286371.3,ENST00000475483.1,ENST00000466678.1	chr3	141626008:141626116:141632493:141632678:141634811:141634852,	141632494	141632678	141632651	141632651	Frame_Shift_Del	C	-	p.N154fs
LIHC	TCGA-G3-A3CJ-01	GK5	ENST00000492097.1,ENST00000392993.2,ENST00000460544.1,ENST00000480757.1,ENST00000544571.1	chr3	141906545:141906621:141917643:141917775:141923536:141923630,	141917644	141917775	141917719	141917719	Frame_Shift_Del	A	-	p.F156fs
LIHC	TCGA-G3-A3CJ-01	XRN1	ENST00000264951.4,ENST00000392981.2,ENST00000463916.1	chr3	142144270:142144380:142145585:142145683:142151502:142151735,	142145586	142145683	142145608	142145608	Frame_Shift_Del	A	-	p.F128fs
LIHC	TCGA-G3-A3CJ-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000513291.1	chr3	142176445:142176597:142177799:142177953:142178068:142178225,	142177800	142177953	142177807	142177807	Frame_Shift_Del	A	-	p.F2499fs
LIHC	TCGA-G3-A3CJ-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000513291.1	chr3	142183938:142184082:142185165:142185375:142186775:142186910,	142185166	142185375	142185234	142185234	Frame_Shift_Del	G	-	p.H2277fs
LIHC	TCGA-G3-A3CJ-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142211973:142212153:142215202:142215362:142215854:142216034,	142215203	142215362	142215223	142215223	Frame_Shift_Del	C	-	p.A1960fs
LIHC	TCGA-G3-A3CJ-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281476	142281476	Frame_Shift_Del	A	-	p.F256fs
LIHC	TCGA-G3-A3CJ-01	TRPC1	ENST00000476941.1,ENST00000273482.6	chr3	142467099:142467302:142496473:142496605:142499675:142499871,	142496474	142496605	142496553	142496553	Frame_Shift_Del	T	-	p.F204fs
LIHC	TCGA-G3-A3CJ-01	U2SURP	ENST00000488497.3,ENST00000480029.1,ENST00000493598.2,ENST00000467348.1,ENST00000397933.2,ENST00000473835.2,ENST00000463563.2	chr3	142761963:142762118:142769780:142769891:142772517:142772624,	142769781	142769891	142769829	142769829	Frame_Shift_Del	A	-	p.K457fs
LIHC	TCGA-G3-A3CJ-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1,ENST00000469350.1	chr3	145824318:145824431:145828071:145828235:145838898:145839035,	145828072	145828235	145828190	145828190	Frame_Shift_Del	T	-	p.K128fs
LIHC	TCGA-G3-A3CJ-01	PLSCR4	ENST00000383083.2,ENST00000460885.1,ENST00000433593.2	chr3	145914492:145914580:145924312:145924548:145938601:145938712,	145924313	145924548	145924503	145924503	Frame_Shift_Del	C	-	p.G55fs
LIHC	TCGA-G3-A3CJ-01	CPB1	ENST00000484877.1,ENST00000282957.4,ENST00000491148.1	chr3	148558664:148558762:148559609:148559711:148562264:148562283,	148559610	148559711	148559665	148559665	Frame_Shift_Del	C	-	p.A177fs
LIHC	TCGA-G3-A3CJ-01	GYG1	ENST00000296048.6	chr3	148727062:148727189:148741839:148742059:148744546:148745134,	148741840	148742059	148741915	148741915	Frame_Shift_Del	A	-	p.T228fs
LIHC	TCGA-G3-A3CJ-01	HLTF	ENST00000392912.2,ENST00000467858.1,ENST00000494055.1,ENST00000310053.5,ENST00000465259.1	chr3	148759952:148760077:148763866:148764046:148765814:148765950,	148763867	148764046	148763891	148763891	Frame_Shift_Del	T	-	p.N683fs
LIHC	TCGA-G3-A3CJ-01	CP	ENST00000264613.6,ENST00000490639.1,ENST00000494544.1	chr3	148901252:148901392:148903025:148903233:148905838:148905883,148901252:148901392:148903025:148903233:148904306:148904519,	148903026	148903233	148903081	148903081	Frame_Shift_Del	C	-	p.D744fs
LIHC	TCGA-G3-A3CJ-01	CP	ENST00000264613.6,ENST00000490639.1,ENST00000494544.1	chr3	148901252:148901392:148903025:148903233:148905838:148905883,148901252:148901392:148903025:148903233:148904306:148904519,	148903026	148903233	148903211	148903211	Frame_Shift_Del	A	-	p.L700fs
LIHC	TCGA-G3-A3CJ-01	CP	ENST00000497902.1,ENST00000264613.6,ENST00000490639.1,ENST00000494544.1	chr3	148903090:148903191:148904306:148904519:148905838:148905883,148903025:148903233:148904306:148904519:148905838:148905883,	148904307	148904519	148904470	148904470	Frame_Shift_Del	T	-	p.K638fs
LIHC	TCGA-G3-A3CJ-01	CP	ENST00000264613.6,ENST00000490639.1	chr3	148928144:148928166:148930237:148930485:148939433:148939611,	148930238	148930485	148930374	148930374	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-G3-A3CJ-01	TM4SF1	ENST00000493348.1	chr3	149087284:149087667:149089473:149089654:149093466:149093556,	149089474	149089654	149089491	149089491	Frame_Shift_Del	A	-	p.C105fs
LIHC	TCGA-G3-A3CJ-01	RNF13	ENST00000467996.1,ENST00000491086.1	chr3	149531051:149531140:149570302:149570383:149589815:149589836,	149570303	149570383	149570351	149570351	Frame_Shift_Del	T	-	p.F55fs
LIHC	TCGA-G3-A3CJ-01	TSC22D2	ENST00000485421.1	chr3	150128965:150129095:150140835:150140907:150155984:150156141,	150140836	150140907	150140851	150140851	Frame_Shift_Del	T	-	p.A658fs
LIHC	TCGA-G3-A3CJ-01	SERP1	ENST00000479209.1	chr3	150262099:150262285:150263489:150263565:150263838:150264286,	150263490	150263565	150263506	150263506	Frame_Shift_Del	A	-	p.F48fs
LIHC	TCGA-G3-A3CJ-01	EIF2A	ENST00000477551.1,ENST00000465535.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150285983:150286079:150289744:150290316:150293435:150293549,	150289745	150290316	150290019	150290019	Frame_Shift_Del	T	-	p.Y362fs
LIHC	TCGA-G3-A3CJ-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150299404:150299533:150300986:150301052,150293435:150293549:150299404:150299533:150300986:150301052,	150299405	150299533	150299510	150299510	Frame_Shift_Del	A	-	p.K536fs
LIHC	TCGA-G3-A3CJ-01	MED12L	ENST00000474524.1	chr3	151129065:151129295:151130926:151131083:151134099:151134210,	151130927	151131083	151130963	151130963	Frame_Shift_Del	G	-	p.V2024fs
LIHC	TCGA-G3-A3CJ-01	MED12L	ENST00000474524.1	chr3	151129065:151129295:151130926:151131083:151134099:151134210,	151130927	151131083	151130967	151130967	Frame_Shift_Del	G	-	p.G2027fs
LIHC	TCGA-G3-A3CJ-01	MED12L	ENST00000488092.1	chr3	151112443:151112655:151134099:151134210:151148086:151148168,	151134100	151134210	151134109	151134109	Frame_Shift_Del	C	-	p.P2068fs
LIHC	TCGA-G3-A3CJ-01	MBNL1	ENST00000478535.1	chr3	152163070:152163328:152165513:152165562:152173330:152173366,	152165514	152165562	152165523	152165523	Frame_Shift_Del	A	-	p.N326fs
LIHC	TCGA-G3-A3CJ-01	MBNL1	ENST00000485910.1,ENST00000282488.7,ENST00000355460.2	chr3	152163070:152163328:152165408:152165562:152173330:152173366,152163070:152163328:152165408:152165562:152177059:152177091,152163070:152163328:152165408:152165562:152174055:152174150,	152165409	152165562	152165523	152165523	Frame_Shift_Del	A	-	p.N326fs
LIHC	TCGA-G3-A3CJ-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000469040.1,ENST00000334686.6,ENST00000494598.1	chr3	155210517:155210642:155211929:155212037:155212126:155212306,	155211930	155212037	155211945	155211945	Frame_Shift_Del	G	-	p.Q694fs
LIHC	TCGA-G3-A3CJ-01	SLC33A1	ENST00000496772.1	chr3	155546016:155546166:155547476:155547692:155551256:155551374,155546016:155546166:155547476:155547692:155560220:155560394,	155547477	155547692	155547517	155547517	Frame_Shift_Del	C	-	p.G481fs
LIHC	TCGA-G3-A3CJ-01	SLC33A1	ENST00000496772.1	chr3	155546016:155546166:155547476:155547692:155551256:155551374,155546016:155546166:155547476:155547692:155560220:155560394,	155547477	155547692	155547539	155547539	Frame_Shift_Del	G	-	p.L474fs
LIHC	TCGA-G3-A3CJ-01	SLC33A1	ENST00000475842.1,ENST00000468581.1,ENST00000359479.3,ENST00000392845.3	chr3	155547644:155547692:155551256:155551374:155551645:155551830,	155551257	155551374	155551309	155551309	Frame_Shift_Del	C	-	p.G405fs
LIHC	TCGA-G3-A3CJ-01	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156396049	156396049	Frame_Shift_Del	T	-	p.I188fs
LIHC	TCGA-G3-A3CJ-01	SHOX2	ENST00000389589.4,ENST00000441443.2	chr3	157820466:157820675:157822846:157822918:157823467:157823839,	157822847	157822918	157822909	157822909	Frame_Shift_Del	T	-	p.K119fs
LIHC	TCGA-G3-A3CJ-01	SHOX2	ENST00000554685.1	chr3	157820466:157820675:157822846:157822914:157823467:157823839,	157822847	157822914	157822909	157822909	Frame_Shift_Del	T	-	p.K119fs
LIHC	TCGA-G3-A3CJ-01	IL12A	ENST00000305579.2,ENST00000496308.1	chr3	159707953:159708099:159710798:159710912:159711237:159711279,	159710799	159710912	159710817	159710817	Frame_Shift_Del	T	-	p.F95fs
LIHC	TCGA-G3-A3CJ-01	SMC4	ENST00000472991.1	chr3	160117437:160117485:160120463:160120655:160122165:160122292,160119777:160119881:160120463:160120655:160122115:160122124,160117456:160117537:160120463:160120655:160122115:160122124,	160120464	160120655	160120525	160120525	Frame_Shift_Del	T	-	p.L127fs
LIHC	TCGA-G3-A3CJ-01	SMC4	ENST00000465563.1,ENST00000469858.1,ENST00000344722.5,ENST00000489573.1,ENST00000462787.1,ENST00000360111.2,ENST00000497984.1,ENST00000357388.3,ENST00000469762.1	chr3	160129707:160129765:160130113:160130241:160131260:160131272,160129809:160129872:160130113:160130241:160130317:160130637,160129809:160129872:160130113:160130241:160131260:160131272,	160130114	160130241	160130142	160130142	Frame_Shift_Del	A	-	p.E294fs
LIHC	TCGA-G3-A3CJ-01	SMC4	ENST00000468653.1	chr3	160129809:160129872:160130113:160130637:160131260:160131272,	160130114	160130637	160130142	160130142	Frame_Shift_Del	A	-	p.E294fs
LIHC	TCGA-G3-A3CJ-01	KPNA4	ENST00000334256.4	chr3	160222745:160222840:160225894:160226057:160227587:160227659,	160225895	160226057	160226035	160226035	Frame_Shift_Del	T	-	p.N411fs
LIHC	TCGA-G3-A3CJ-01	KPNA4	ENST00000334256.4	chr3	160233239:160233368:160239566:160239698:160243587:160243632,	160239567	160239698	160239604	160239604	Frame_Shift_Del	A	-	p.L289fs
LIHC	TCGA-G3-A3CJ-01	NMD3	ENST00000472947.1,ENST00000351193.2,ENST00000460469.1	chr3	160960295:160960441:160964123:160964236:160965045:160965118,	160964124	160964236	160964183	160964183	Frame_Shift_Del	T	-	p.Y359fs
LIHC	TCGA-G3-A3CJ-01	BCHE	ENST00000264381.3	chr3	165490871:165491294:165503932:165504099:165547304:165548829,	165503933	165504099	165503955	165503955	Frame_Shift_Del	A	-	p.F554fs
LIHC	TCGA-G3-A3CJ-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547316	165547316	Frame_Shift_Del	A	-	p.F502fs
LIHC	TCGA-G3-A3CJ-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547446	165547446	Frame_Shift_Del	G	-	p.P459fs
LIHC	TCGA-G3-A3CJ-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547721	165547721	Frame_Shift_Del	T	-	p.K367fs
LIHC	TCGA-G3-A3CJ-01	ZBBX	ENST00000307529.5,ENST00000455345.2,ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167031761:167031904:167033537:167033617:167034792:167034893,	167033538	167033617	167033564	167033564	Frame_Shift_Del	T	-	p.K416fs
LIHC	TCGA-G3-A3CJ-01	WDR49	ENST00000308378.3,ENST00000476376.1	chr3	167240119:167240272:167245607:167245805:167246839:167247027,	167245608	167245805	167245762	167245762	Frame_Shift_Del	G	-	p.P465fs
LIHC	TCGA-G3-A3CJ-01	WDR49	ENST00000453925.2,ENST00000472600.1,ENST00000308378.3	chr3	167284617:167284682:167293705:167293939:167319914:167320063,167277851:167278016:167293705:167293939:167319914:167320063,	167293706	167293939	167293877	167293877	Frame_Shift_Del	G	-	p.P105fs
LIHC	TCGA-G3-A3CJ-01	PDCD10	ENST00000481136.1,ENST00000497056.2	chr3	167422629:167422683:167437849:167438061:167443188:167443261,167422629:167422683:167437849:167438061:167452593:167452620,	167437850	167438061	167437882	167437882	Frame_Shift_Del	G	-	p.L22fs
LIHC	TCGA-G3-A3CJ-01	GOLIM4	ENST00000309027.4	chr3	167750307:167750640:167754623:167754782:167758573:167758657,167750307:167750640:167754623:167754782:167759179:167759262,	167754624	167754782	167754697	167754697	Frame_Shift_Del	T	-	p.N257fs
LIHC	TCGA-G3-A3CJ-01	MYNN	ENST00000392733.1	chr3	169491214:169491250:169492052:169492349:169496555:169497349,	169492053	169492349	169492227	169492227	Frame_Shift_Del	T	-	p.Y48fs
LIHC	TCGA-G3-A3CJ-01	LRRC34	ENST00000522830.1,ENST00000316515.7,ENST00000522526.2,ENST00000522329.1,ENST00000446859.1	chr3	169511272:169511626:169513272:169513399:169514001:169514134,	169513273	169513399	169513370	169513370	Frame_Shift_Del	C	-	p.G333fs
LIHC	TCGA-G3-A3CJ-01	LRRC34	ENST00000524327.1,ENST00000522830.1,ENST00000522080.1,ENST00000522596.2,ENST00000446859.1	chr3	169514001:169514157:169514532:169514687:169518446:169518542,	169514533	169514687	169514647	169514647	Frame_Shift_Del	T	-	p.N233fs
LIHC	TCGA-G3-A3CJ-01	SEC62	ENST00000470355.1,ENST00000337002.4,ENST00000480708.1	chr3	169703592:169703653:169706027:169706147:169710381:169710509,	169706028	169706147	169706056	169706056	Frame_Shift_Del	C	-	p.F213fs
LIHC	TCGA-G3-A3CJ-01	PHC3	ENST00000467570.1,ENST00000495893.2,ENST00000494943.1	chr3	169847172:169847340:169854206:169854453:169863210:169863309,	169854207	169854453	169854384	169854384	Frame_Shift_Del	T	-	p.S236fs
LIHC	TCGA-G3-A3CJ-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078165	170078165	Frame_Shift_Del	A	-	p.K17fs
LIHC	TCGA-G3-A3CJ-01	SKIL	ENST00000259119.4,ENST00000426052.2,ENST00000458537.3	chr3	170099063:170099129:170102320:170102553:170108010:170108252,	170102321	170102553	170102467	170102467	Frame_Shift_Del	A	-	p.Q448fs
LIHC	TCGA-G3-A3CJ-01	TNIK	ENST00000488470.1,ENST00000341852.6,ENST00000436636.2,ENST00000357327.5	chr3	170819237:170819422:170824971:170824995:170825853:170825951,	170824972	170824995	170824984	170824984	Frame_Shift_Del	T	-	p.K798fs
LIHC	TCGA-G3-A3CJ-01	PLD1	ENST00000356327.5	chr3	171395355:171395484:171405160:171405374:171406465:171406666,	171405161	171405374	171405328	171405328	Frame_Shift_Del	T	-	p.N529fs
LIHC	TCGA-G3-A3CJ-01	FNDC3B	ENST00000469491.1,ENST00000415807.2,ENST00000443501.1,ENST00000416957.1,ENST00000336824.4	chr3	171851260:171851336:171944660:171944737:171965322:171965566,	171944661	171944737	171944675	171944675	Frame_Shift_Del	C	-	p.P68fs
LIHC	TCGA-G3-A3CJ-01	FNDC3B	ENST00000469491.1,ENST00000415807.2,ENST00000443501.1,ENST00000416957.1,ENST00000336824.4	chr3	171944660:171944737:171965322:171965566:171969049:171969246,	171965323	171965566	171965397	171965397	Frame_Shift_Del	C	-	p.Y113fs
LIHC	TCGA-G3-A3CJ-01	FNDC3B	ENST00000469491.1,ENST00000415807.2,ENST00000416957.1,ENST00000336824.4	chr3	171965322:171965566:171969049:171969331:172003715:172003774,	171969050	171969331	171969184	171969184	Frame_Shift_Del	A	-	p.K215fs
LIHC	TCGA-G3-A3CJ-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174814716	174814716	Frame_Shift_Del	T	-	p.G60fs
LIHC	TCGA-G3-A3CJ-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1	chr3	174951720:174951994:174974199:174974319:175041963:175042114,	174974200	174974319	174974290	174974290	Frame_Shift_Del	A	-	p.K304fs
LIHC	TCGA-G3-A3CJ-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1,ENST00000414826.1	chr3	175181188:175181281:175184766:175184972:175189426:175189546,	175184767	175184972	175184914	175184914	Frame_Shift_Del	T	-	p.V492fs
LIHC	TCGA-G3-A3CJ-01	NAALADL2	ENST00000489299.1,ENST00000454872.1	chr3	175189426:175189546:175293828:175293975:175345078:175345174,	175293829	175293975	175293946	175293946	Frame_Shift_Del	T	-	p.F591fs
LIHC	TCGA-G3-A3CJ-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769324	176769324	Frame_Shift_Del	T	-	p.N132fs
LIHC	TCGA-G3-A3CJ-01	PIK3CA	ENST00000263967.3	chr3	178947791:178947909:178948012:178948164:178951881:178957881,	178948013	178948164	178948016	178948016	Frame_Shift_Del	T	-	p.F930fs
LIHC	TCGA-G3-A3CJ-01	PIK3CA	ENST00000263967.3	chr3	178947791:178947909:178948012:178948164:178951881:178957881,	178948013	178948164	178948055	178948055	Frame_Shift_Del	A	-	p.K944fs
LIHC	TCGA-G3-A3CJ-01	KCNMB3	ENST00000392686.2,ENST00000485523.1	chr3	178962282:178962481:178968530:178968722:178976735:178976996,	178968531	178968722	178968599	178968599	Frame_Shift_Del	G	-	p.A60fs
LIHC	TCGA-G3-A3CJ-01	MFN1	ENST00000357390.4,ENST00000263969.5,ENST00000471841.1,ENST00000474903.1,ENST00000280653.7	chr3	179104220:179104417:179107791:179107926:179109768:179110284,	179107792	179107926	179107842	179107842	Frame_Shift_Del	A	-	p.Q688fs
LIHC	TCGA-G3-A3CJ-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408081	179408081	Frame_Shift_Del	T	-	p.I116fs
LIHC	TCGA-G3-A3CJ-01	PEX5L	ENST00000491640.1,ENST00000263962.8,ENST00000469198.1,ENST00000465751.1,ENST00000476138.1,ENST00000485199.1,ENST00000467460.1,ENST00000463761.1,ENST00000468741.1,ENST00000472994.1	chr3	179593231:179593265:179597716:179597911:179605460:179605572,	179597717	179597911	179597822	179597822	Frame_Shift_Del	T	-	p.T134fs
LIHC	TCGA-G3-A3CJ-01	CCDC39	ENST00000442201.2,ENST00000476379.1,ENST00000273654.4	chr3	180369950:180370054:180372549:180372741:180377239:180377368,	180372550	180372741	180372706	180372706	Frame_Shift_Del	T	-	p.K342fs
LIHC	TCGA-G3-A3CJ-01	FXR1	ENST00000357559.4,ENST00000445140.2,ENST00000472339.1,ENST00000479176.1	chr3	180630472:180630524:180651121:180651174:180665652:180665724,180630472:180630524:180651121:180651174:180652925:180652984,	180651122	180651174	180651162	180651162	Frame_Shift_Del	T	-	p.V31fs
LIHC	TCGA-G3-A3CJ-01	FXR1	ENST00000468861.1	chr3	180651121:180651174:180652925:180653019:180665652:180665724,180630472:180630524:180652925:180653019:180665652:180665724,	180652926	180653019	180652986	180652986	Frame_Shift_Del	A	-	p.I55fs
LIHC	TCGA-G3-A3CJ-01	DNAJC19	ENST00000478723.1,ENST00000479269.1,ENST00000486355.1,ENST00000382564.2	chr3	180703713:180703784:180705810:180705884:180705965:180706017,180704785:180704810:180705810:180705884:180707387:180707491,180704785:180704810:180705810:180705884:180705965:180706017,	180705811	180705884	180705829	180705829	Frame_Shift_Del	A	-	p.F37fs
LIHC	TCGA-G3-A3CJ-01	ATP11B	ENST00000323116.5,ENST00000498086.1	chr3	182575665:182575816:182576949:182577147:182583243:182583486,	182576950	182577147	182576979	182576979	Frame_Shift_Del	T	-	p.A344fs
LIHC	TCGA-G3-A3CJ-01	ATP11B	ENST00000466758.1,ENST00000490303.1,ENST00000323116.5,ENST00000498086.1	chr3	182602540:182602686:182603738:182603798:182605373:182605501,	182603739	182603798	182603763	182603763	Frame_Shift_Del	T	-	p.F894fs
LIHC	TCGA-G3-A3CJ-01	DCUN1D1	ENST00000492563.1,ENST00000469954.1,ENST00000292782.4	chr3	182665337:182665420:182679013:182679144:182681668:182681837,	182679014	182679144	182679062	182679062	Frame_Shift_Del	A	-	p.Y158fs
LIHC	TCGA-G3-A3CJ-01	DCUN1D1	ENST00000492563.1	chr3	182681787:182681837:182683466:182683541:182698274:182698308,	182683467	182683541	182683472	182683472	Frame_Shift_Del	T	-	p.T25fs
LIHC	TCGA-G3-A3CJ-01	MCF2L2	ENST00000473233.1,ENST00000328913.3,ENST00000488149.1,ENST00000468976.1	chr3	182910786:182910884:182913009:182913043:182923663:182923742,	182913010	182913043	182913020	182913020	Frame_Shift_Del	T	-	p.M970fs
LIHC	TCGA-G3-A3CJ-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000417784.1,ENST00000317096.4	chr3	183547296:183547497:183551279:183551377:183558357:183558406,183547296:183547497:183551279:183551377:183551511:183551613,	183551280	183551377	183551318	183551318	Frame_Shift_Del	A	-	p.F330fs
LIHC	TCGA-G3-A3CJ-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000435888.1,ENST00000469056.1,ENST00000317096.4	chr3	183580540:183580589:183584412:183584553:183585652:183585848,	183584413	183584553	183584434	183584434	Frame_Shift_Del	T	-	p.K147fs
LIHC	TCGA-G3-A3CJ-01	ALG3	ENST00000455059.1,ENST00000397676.3,ENST00000423996.1,ENST00000418734.2,ENST00000411922.1,ENST00000445626.2	chr3	183962388:183962509:183962985:183963146:183963255:183963395,	183962986	183963146	183963127	183963127	Frame_Shift_Del	A	-	p.F116fs
LIHC	TCGA-G3-A3CJ-01	CHRD	ENST00000470150.1,ENST00000204604.1,ENST00000448472.1,ENST00000450923.1,ENST00000420973.1,ENST00000348986.3	chr3	184103833:184103947:184104279:184104543:184104632:184104726,	184104280	184104543	184104490	184104490	Frame_Shift_Del	G	-	p.G715fs
LIHC	TCGA-G3-A3CJ-01	VPS8	ENST00000436792.2,ENST00000458721.1,ENST00000287546.4,ENST00000437079.3	chr3	184587310:184587316:184588503:184588593:184603897:184603944,	184588504	184588593	184588563	184588563	Frame_Shift_Del	A	-	p.G568fs
LIHC	TCGA-G3-A3CJ-01	MAP3K13	ENST00000443863.1,ENST00000424227.1,ENST00000433092.1,ENST00000535426.1,ENST00000265026.3	chr3	185155332:185155418:185161232:185161424:185165576:185165735,	185161233	185161424	185161393	185161393	Frame_Shift_Del	A	-	p.K274fs
LIHC	TCGA-G3-A3CJ-01	SENP2	ENST00000413407.1,ENST00000545472.1,ENST00000478001.1,ENST00000427465.2,ENST00000296257.5	chr3	185331142:185331196:185332351:185332528:185337086:185337290,185331142:185331196:185332351:185332528:185335267:185335297,	185332352	185332528	185332472	185332472	Frame_Shift_Del	A	-	p.N352fs
LIHC	TCGA-G3-A3CJ-01	SENP2	ENST00000413407.1,ENST00000545472.1,ENST00000427465.2,ENST00000483005.1,ENST00000296257.5	chr3	185332351:185332528:185335267:185335399:185337086:185337224,	185335268	185335399	185335372	185335372	Frame_Shift_Del	A	-	p.L405fs
LIHC	TCGA-G3-A3CJ-01	IGF2BP2	ENST00000382199.2,ENST00000346192.3,ENST00000457616.2,ENST00000421047.2	chr3	185364812:185364926:185367190:185367322:185369881:185369956,	185367191	185367322	185367272	185367272	Frame_Shift_Del	G	-	p.P504fs
LIHC	TCGA-G3-A3CJ-01	EIF4A2	ENST00000492144.1,ENST00000426808.1,ENST00000429589.1,ENST00000323963.5,ENST00000443963.1,ENST00000425053.1,ENST00000475653.1,ENST00000440191.2,ENST00000468362.1,ENST00000356531.5	chr3	186503952:186504062:186504290:186504434:186504915:186505053,	186504291	186504434	186504339	186504339	Frame_Shift_Del	A	-	p.K227fs
LIHC	TCGA-G3-A3CJ-01	RFC4	ENST00000296273.2,ENST00000417876.1,ENST00000392481.2	chr3	186507930:186508044:186508114:186508195:186509513:186509639,	186508115	186508195	186508133	186508133	Frame_Shift_Del	T	-	p.K288fs
LIHC	TCGA-G3-A3CJ-01	ST6GAL1	ENST00000169298.3,ENST00000448044.1	chr3	186756529:186756661:186760441:186761098:186769036:186769134,	186760442	186761098	186760999	186760999	Frame_Shift_Del	C	-	p.P170fs
LIHC	TCGA-G3-A3CJ-01	MASP1	ENST00000296280.6,ENST00000392472.2	chr3	186947547:186947685:186959268:186959343:186961271:186961373,186951871:186954355:186959268:186959343:186961271:186961373,	186959269	186959343	186959282	186959282	Frame_Shift_Del	G	-	p.P430fs
LIHC	TCGA-G3-A3CJ-01	MASP1	ENST00000392472.2	chr3	186978557:186978660:186980330:186980508:187003612:187003796,186978557:186978660:186980330:186980508:187009415:187009485,	186980331	186980508	186980417	186980417	Frame_Shift_Del	G	-	p.P110fs
LIHC	TCGA-G3-A3CJ-01	BCL6	ENST00000419510.2,ENST00000232014.4,ENST00000406870.2	chr3	187443286:187443417:187444518:187444686:187446147:187446332,	187444519	187444686	187444592	187444592	Frame_Shift_Del	G	-	p.P545fs
LIHC	TCGA-G3-A3CJ-01	LPP	ENST00000414139.1,ENST00000312675.4	chr3	188059450:188059507:188123899:188124101:188202379:188202383,187943192:187943315:188123899:188124101:188202379:188202383,	188123900	188124101	188124041	188124041	Frame_Shift_Del	T	-	p.F45fs
LIHC	TCGA-G3-A3CJ-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327045	188327045	Frame_Shift_Del	A	-	p.K177fs
LIHC	TCGA-G3-A3CJ-01	TP63	ENST00000354600.5,ENST00000392463.2,ENST00000440651.2,ENST00000456148.1,ENST00000449992.1,ENST00000392460.3,ENST00000382063.4,ENST00000264731.3	chr3	189590647:189590784:189604182:189604340:189607128:189607273,	189604183	189604340	189604235	189604235	Frame_Shift_Del	A	-	p.K468fs
LIHC	TCGA-G3-A3CJ-01	CCDC50	ENST00000392456.3	chr3	191087707:191087825:191092850:191093378:191097947:191098063,	191092851	191093378	191092914	191092914	Frame_Shift_Del	A	-	p.Q171fs
LIHC	TCGA-G3-A3CJ-01	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000450950.2,ENST00000392443.3	chr3	193176869:193177020:193180550:193180612:193182728:193182917,	193180551	193180612	193180594	193180594	Frame_Shift_Del	C	-	p.D494fs
LIHC	TCGA-G3-A3CJ-01	LSG1	ENST00000475763.1,ENST00000265245.5,ENST00000460584.1	chr3	194362901:194362976:194365301:194365475:194366892:194366972,	194365302	194365475	194365347	194365347	Frame_Shift_Del	T	-	p.K584fs
LIHC	TCGA-G3-A3CJ-01	ACAP2	ENST00000326793.6,ENST00000466876.1	chr3	195006524:195006586:195009849:195009960:195012434:195012474,	195009850	195009960	195009949	195009949	Frame_Shift_Del	A	-	p.L692fs
LIHC	TCGA-G3-A3CJ-01	ACAP2	ENST00000439758.1,ENST00000326793.6,ENST00000471593.1	chr3	195047613:195047688:195053756:195053852:195057660:195057694,	195053757	195053852	195053781	195053781	Frame_Shift_Del	G	-	p.P215fs
LIHC	TCGA-G3-A3CJ-01	ACAP2	ENST00000480906.1	chr3	195102631:195102751:195112818:195112876:195163523:195163584,	195112819	195112876	195112828	195112828	Frame_Shift_Del	T	-	p.K34fs
LIHC	TCGA-G3-A3CJ-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195453158	195453158	Frame_Shift_Del	A	-	p.K391fs
LIHC	TCGA-G3-A3CJ-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195505663	195505663	Frame_Shift_Del	G	-	p.P4263fs
LIHC	TCGA-G3-A3CJ-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195509319	195509319	Frame_Shift_Del	G	-	p.T3044fs
LIHC	TCGA-G3-A3CJ-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195515079	195515079	Frame_Shift_Del	G	-	p.T1124fs
LIHC	TCGA-G3-A3CJ-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195516677	195516677	Frame_Shift_Del	T	-	p.T592fs
LIHC	TCGA-G3-A3CJ-01	TNK2	ENST00000495247.1,ENST00000381916.2,ENST00000416152.1,ENST00000439230.1	chr3	195595500:195595580:195596367:195596412:195596984:195597039,	195596368	195596412	195596379	195596379	Frame_Shift_Del	A	-	p.F590fs
LIHC	TCGA-G3-A3CJ-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196083507:196083717:196088714:196088794:196089164:196089415,	196088715	196088794	196088753	196088753	Frame_Shift_Del	T	-	p.R424fs
LIHC	TCGA-G3-A3CJ-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196089164:196089558:196094898:196095026:196096291:196096382,	196094899	196095026	196094917	196094917	Frame_Shift_Del	G	-	p.P272fs
LIHC	TCGA-G3-A3CJ-01	RNF168	ENST00000318037.3,ENST00000437070.1	chr3	196202101:196202183:196210640:196210762:196214269:196214449,	196210641	196210762	196210678	196210678	Frame_Shift_Del	T	-	p.S215fs
LIHC	TCGA-G3-A3CJ-01	RNF168	ENST00000318037.3,ENST00000437070.1	chr3	196202101:196202183:196210640:196210762:196214269:196214449,	196210641	196210762	196210712	196210712	Frame_Shift_Del	T	-	p.K203fs
LIHC	TCGA-G3-A3CJ-01	WDR53	ENST00000332629.5	chr3	196281064:196281678:196287866:196288362:196293747:196294178,	196287867	196288362	196288027	196288027	Frame_Shift_Del	T	-	p.N107fs
LIHC	TCGA-G3-A3CJ-01	PAK2	ENST00000327134.3	chr3	196547264:196547438:196554066:196554204:196555189:196555300,	196554067	196554204	196554199	196554199	Frame_Shift_Del	T	-	p.L495fs
LIHC	TCGA-G3-A3CJ-01	DLG1	ENST00000450955.1,ENST00000346964.2,ENST00000357674.4	chr3	196796089:196796131:196803456:196803556:196807921:196807988,	196803457	196803556	196803520	196803520	Frame_Shift_Del	A	-	p.S681fs
LIHC	TCGA-G3-A3CJ-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000392381.3,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4	chr3	196817782:196817897:196831773:196831876:196842797:196842954,	196831774	196831876	196831818	196831818	Frame_Shift_Del	T	-	p.N534fs
LIHC	TCGA-G3-A3CJ-01	LRCH3	ENST00000433298.1,ENST00000414675.2	chr3	197579431:197579491:197581262:197581316:197585704:197585776,197579431:197579491:197581262:197581316:197592293:197592342,	197581263	197581316	197581265	197581265	Frame_Shift_Del	C	-	p.C531fs
LIHC	TCGA-G3-A3CJ-01	IQCG	ENST00000490748.1,ENST00000478903.1,ENST00000265239.6,ENST00000455191.1	chr3	197616283:197616585:197618316:197618418:197619498:197619630,	197618317	197618418	197618375	197618375	Frame_Shift_Del	T	-	p.K380fs
LIHC	TCGA-G3-A3CJ-01	IQCG	ENST00000490748.1,ENST00000265239.6,ENST00000455191.1	chr3	197619498:197619630:197639545:197639620:197640751:197640913,	197639546	197639620	197639569	197639569	Frame_Shift_Del	T	-	p.M314fs
LIHC	TCGA-G3-A3CJ-01	IQCG	ENST00000490748.1,ENST00000265239.6,ENST00000455191.1	chr3	197619498:197619630:197639545:197639620:197640751:197640913,	197639546	197639620	197639605	197639605	Frame_Shift_Del	T	-	p.T302fs
LIHC	TCGA-G3-A3CJ-01	LMLN	ENST00000332636.5,ENST00000420910.2,ENST00000482695.1,ENST00000451139.2,ENST00000330198.4	chr3	197751528:197751659:197762703:197762914:197765437:197765538,	197762704	197762914	197762732	197762732	Frame_Shift_Del	T	-	p.V562fs
LIHC	TCGA-G3-A3CJ-01	PIGG	ENST00000310340.5,ENST00000383028.4,ENST00000296306.7,ENST00000453061.2,ENST00000504346.1	chr4	517620:517702:520827:521019:524224:524287,	520828	521019	520863	520863	Frame_Shift_Del	C	-	p.A702fs
LIHC	TCGA-G3-A3CJ-01	PIGG	ENST00000310340.5,ENST00000383028.4,ENST00000296306.7,ENST00000453061.2,ENST00000504346.1	chr4	517620:517702:520827:521019:524224:524287,	520828	521019	520869	520869	Frame_Shift_Del	C	-	p.S704fs
LIHC	TCGA-G3-A3CJ-01	PIGG	ENST00000310340.5,ENST00000383028.4,ENST00000296306.7,ENST00000453061.2,ENST00000504346.1	chr4	520827:521019:524224:524534:527606:527770,	524225	524534	524528	524528	Frame_Shift_Del	T	-	p.Y855fs
LIHC	TCGA-G3-A3CJ-01	PCGF3	ENST00000470161.2,ENST00000440452.1,ENST00000521023.2,ENST00000505655.2,ENST00000362003.5,ENST00000430644.1	chr4	738387:738476:755066:755204:758771:758852,	755067	755204	755106	755106	Frame_Shift_Del	G	-	p.G168fs
LIHC	TCGA-G3-A3CJ-01	PCGF3	ENST00000470161.2,ENST00000440452.1,ENST00000521023.2,ENST00000505655.2,ENST00000362003.5,ENST00000430644.1	chr4	738387:738476:755066:755204:758771:758852,	755067	755204	755175	755175	Frame_Shift_Del	A	-	p.K192fs
LIHC	TCGA-G3-A3CJ-01	CPLX1	ENST00000304062.6	chr4	780318:780486:786220:786396:818279:818389,	786221	786396	786363	786363	Frame_Shift_Del	C	-	p.G22fs
LIHC	TCGA-G3-A3CJ-01	GAK	ENST00000511980.1	chr4	844723:844872:845537:845762:853393:853510,844723:844872:845537:845762:853149:853281,	845538	845762	845556	845556	Frame_Shift_Del	C	-	p.V1164fs
LIHC	TCGA-G3-A3CJ-01	GAK	ENST00000511163.1,ENST00000314167.4,ENST00000509566.1,ENST00000510799.1	chr4	845640:845762:853393:853510:858909:859032,	853394	853510	853432	853432	Frame_Shift_Del	G	-	p.P1082fs
LIHC	TCGA-G3-A3CJ-01	TMEM175	ENST00000514453.1	chr4	926274:926328:941496:941680:941903:941942,926274:926328:941496:941680:944208:944279,	941497	941680	941569	941569	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-G3-A3CJ-01	TMEM175	ENST00000504505.1	chr4	926274:926328:941496:941942:944208:944279,	941497	941942	941569	941569	Frame_Shift_Del	G	-	p.P14fs
LIHC	TCGA-G3-A3CJ-01	TMEM175	ENST00000514453.1	chr4	926274:926328:941496:941680:941903:941942,926274:926328:941496:941680:944208:944279,	941497	941680	941652	941652	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-G3-A3CJ-01	TMEM175	ENST00000504505.1	chr4	926274:926328:941496:941942:944208:944279,	941497	941942	941652	941652	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-G3-A3CJ-01	DGKQ	ENST00000509465.1,ENST00000273814.3	chr4	956222:956401:956559:956708:956926:957078,	956560	956708	956661	956661	Frame_Shift_Del	C	-	p.G646fs
LIHC	TCGA-G3-A3CJ-01	DGKQ	ENST00000510286.1,ENST00000509465.1,ENST00000273814.3	chr4	962266:962352:962598:962698:964780:964860,	962599	962698	962686	962686	Frame_Shift_Del	G	-	p.H122fs
LIHC	TCGA-G3-A3CJ-01	CTBP1	ENST00000514495.1	chr4	1219225:1219354:1221986:1222131:1242703:1242764,	1221987	1222131	1221993	1221993	Frame_Shift_Del	C	-	p.D101fs
LIHC	TCGA-G3-A3CJ-01	CTBP1	ENST00000514495.1	chr4	1219225:1219354:1221986:1222131:1242703:1242764,	1221987	1222131	1222110	1222110	Frame_Shift_Del	C	-	p.A62fs
LIHC	TCGA-G3-A3CJ-01	UVSSA	ENST00000511216.1,ENST00000389851.4,ENST00000507531.1	chr4	1348904:1349033:1360107:1360219:1369151:1369296,	1360108	1360219	1360119	1360119	Frame_Shift_Del	G	-	p.L396fs
LIHC	TCGA-G3-A3CJ-01	SLBP	ENST00000429429.2,ENST00000483348.1,ENST00000488267.1,ENST00000489418.1,ENST00000318386.4	chr4	1695173:1695440:1696500:1696567:1697928:1698078,	1696501	1696567	1696549	1696549	Frame_Shift_Del	T	-	p.E216fs
LIHC	TCGA-G3-A3CJ-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1729516	1729516	Frame_Shift_Del	G	-	p.L129fs
LIHC	TCGA-G3-A3CJ-01	TACC3	ENST00000484651.1,ENST00000485989.2,ENST00000466077.1,ENST00000313288.4	chr4	1732613:1732689:1732898:1733028:1736999:1737052,	1732899	1733028	1732966	1732966	Frame_Shift_Del	C	-	p.T510fs
LIHC	TCGA-G3-A3CJ-01	FGFR3	ENST00000340107.4	chr4	1805418:1805563:1806056:1806247:1806550:1806696,1804640:1804791:1806056:1806247:1806550:1806696,	1806057	1806247	1806196	1806196	Frame_Shift_Del	C	-	p.G407fs
LIHC	TCGA-G3-A3CJ-01	FGFR3	ENST00000260795.2,ENST00000412135.2,ENST00000340107.4,ENST00000440486.2,ENST00000352904.1	chr4	1807788:1807900:1807983:1808054:1808272:1808410,	1807984	1808054	1807999	1807999	Frame_Shift_Del	A	-	p.K661fs
LIHC	TCGA-G3-A3CJ-01	LETM1	ENST00000302787.2	chr4	1827290:1827410:1834470:1834674:1836571:1836709,	1834471	1834674	1834626	1834626	Frame_Shift_Del	A	-	p.S309fs
LIHC	TCGA-G3-A3CJ-01	LETM1	ENST00000466175.1	chr4	1843073:1843524:1850875:1850936:1857595:1857682,	1850876	1850936	1850890	1850890	Frame_Shift_Del	C	-	p.G43fs
LIHC	TCGA-G3-A3CJ-01	ZFYVE28	ENST00000290974.2,ENST00000511071.1,ENST00000503000.1	chr4	2343204:2343342:2355659:2355800:2366212:2366531,2343204:2343342:2355659:2355800:2420011:2420336,	2355660	2355800	2355701	2355701	Frame_Shift_Del	G	-	p.Q47fs
LIHC	TCGA-G3-A3CJ-01	TNIP2	ENST00000510267.1,ENST00000505186.1,ENST00000315423.7	chr4	2746113:2746233:2746423:2746672:2747172:2747262,	2746424	2746672	2746543	2746543	Frame_Shift_Del	G	-	p.R156fs
LIHC	TCGA-G3-A3CJ-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000355842.3,ENST00000398123.2,ENST00000264758.7,ENST00000446856.1,ENST00000509039.1,ENST00000503169.1,ENST00000511797.1,ENST00000398125.1,ENST00000503455.2,ENST00000508684.1	chr4	2877622:2877837:2883624:2883787:2886241:2886296,	2883625	2883787	2883681	2883681	Frame_Shift_Del	C	-	p.N84fs
LIHC	TCGA-G3-A3CJ-01	ADD1	ENST00000398129.1,ENST00000264758.7,ENST00000514940.1,ENST00000446856.1	chr4	2916668:2916767:2927740:2927839:2929897:2930018,	2927741	2927839	2927799	2927799	Frame_Shift_Del	C	-	p.V638fs
LIHC	TCGA-G3-A3CJ-01	MFSD10	ENST00000507555.1,ENST00000508221.1,ENST00000507272.1,ENST00000514800.1,ENST00000329687.4,ENST00000512781.1,ENST00000355443.4,ENST00000509676.1	chr4	2933791:2933880:2934077:2934239:2934326:2934417,	2934078	2934239	2934081	2934081	Frame_Shift_Del	T	-	p.K230fs
LIHC	TCGA-G3-A3CJ-01	MFSD10	ENST00000503596.1	chr4	2933791:2933880:2934077:2934136:2934326:2934417,	2934078	2934136	2934081	2934081	Frame_Shift_Del	T	-	p.K230fs
LIHC	TCGA-G3-A3CJ-01	MFSD10	ENST00000507555.1,ENST00000508221.1,ENST00000507272.1,ENST00000514800.1,ENST00000329687.4,ENST00000512781.1,ENST00000355443.4,ENST00000509676.1	chr4	2933791:2933880:2934077:2934239:2934326:2934417,	2934078	2934239	2934227	2934227	Frame_Shift_Del	C	-	p.V182fs
LIHC	TCGA-G3-A3CJ-01	MFSD10	ENST00000507272.1	chr4	2934077:2934239:2934326:2934417:2934832:2934904,	2934327	2934417	2934406	2934406	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-G3-A3CJ-01	MFSD10	ENST00000503596.1	chr4	2934077:2934239:2934326:2934485:2934832:2934904,2934077:2934136:2934326:2934485:2934832:2934904,	2934327	2934485	2934406	2934406	Frame_Shift_Del	C	-	p.G151fs
LIHC	TCGA-G3-A3CJ-01	MFSD10	ENST00000507555.1,ENST00000508221.1,ENST00000329687.4,ENST00000355443.4,ENST00000503596.1,ENST00000509676.1	chr4	2934832:2934936:2935293:2935390:2935479:2935671,	2935294	2935390	2935384	2935384	Frame_Shift_Del	G	-	p.L60fs
LIHC	TCGA-G3-A3CJ-01	GRK4	ENST00000504933.1,ENST00000398051.4,ENST00000345167.6,ENST00000398052.4,ENST00000505271.1	chr4	3024140:3024178:3029638:3029728:3030927:3031136,	3029639	3029728	3029717	3029717	Frame_Shift_Del	T	-	p.V350fs
LIHC	TCGA-G3-A3CJ-01	HTT	ENST00000355072.5,ENST00000510626.1	chr4	3137952:3138053:3142236:3142383:3144492:3144613,	3142237	3142383	3142325	3142325	Frame_Shift_Del	A	-	p.K963fs
LIHC	TCGA-G3-A3CJ-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000382788.3	chr4	3319765:3319778:3344663:3344780:3415798:3415968,3319765:3319778:3344663:3344780:3388142:3388164,	3344664	3344780	3344733	3344733	Frame_Shift_Del	G	-	p.G651fs
LIHC	TCGA-G3-A3CJ-01	DOK7	ENST00000340083.5,ENST00000389653.2	chr4	3478068:3478269:3487265:3487385:3491403:3491523,	3487266	3487385	3487344	3487344	Frame_Shift_Del	C	-	p.S204fs
LIHC	TCGA-G3-A3CJ-01	LYAR	ENST00000343470.4,ENST00000452476.1	chr4	4269430:4269750:4270256:4270342:4275309:4275396,	4270257	4270342	4270294	4270294	Frame_Shift_Del	G	-	p.P323fs
LIHC	TCGA-G3-A3CJ-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5664833:5664973:5667241:5667376:5682986:5683040,	5667242	5667376	5667360	5667360	Frame_Shift_Del	C	-	p.G216fs
LIHC	TCGA-G3-A3CJ-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5757990:5758089:5785278:5785491:5795334:5795444,	5785279	5785491	5785325	5785325	Frame_Shift_Del	C	-	p.A537fs
LIHC	TCGA-G3-A3CJ-01	JAKMIP1	ENST00000409021.3,ENST00000409371.3	chr4	6043885:6043954:6050583:6050649:6051545:6051599,	6050584	6050649	6050616	6050616	Frame_Shift_Del	G	-	p.Q666fs
LIHC	TCGA-G3-A3CJ-01	KIAA0232	ENST00000425103.1	chr4	6784466:6784568:6825911:6826411:6843793:6843931,	6825912	6826411	6826363	6826363	Frame_Shift_Del	C	-	p.V61fs
LIHC	TCGA-G3-A3CJ-01	KIAA0232	ENST00000307659.5,ENST00000503069.1,ENST00000425103.1	chr4	6858890:6858957:6860151:6860233:6862627:6862666,	6860152	6860233	6860177	6860177	Frame_Shift_Del	G	-	p.E154fs
LIHC	TCGA-G3-A3CJ-01	TBC1D14	ENST00000448507.1	chr4	6911170:6911232:6925099:6925838:6969030:6969151,	6925100	6925838	6925341	6925341	Frame_Shift_Del	C	-	p.N75fs
LIHC	TCGA-G3-A3CJ-01	SH3TC1	ENST00000245105.3	chr4	8201097:8201132:8206893:8207093:8211391:8211549,8201097:8201132:8206893:8207093:8211474:8211549,	8206894	8207093	8206971	8206971	Frame_Shift_Del	G	-	p.R17fs
LIHC	TCGA-G3-A3CJ-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229685	8229685	Frame_Shift_Del	C	-	p.A679fs
LIHC	TCGA-G3-A3CJ-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229704	8229704	Frame_Shift_Del	C	-	p.L685fs
LIHC	TCGA-G3-A3CJ-01	ACOX3	ENST00000503233.1,ENST00000508302.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8383280:8383334:8390899:8391013:8391338:8391461,	8390900	8391013	8390937	8390937	Frame_Shift_Del	A	-	p.F500fs
LIHC	TCGA-G3-A3CJ-01	ACOX3	ENST00000503233.1,ENST00000508302.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8383280:8383334:8390899:8391013:8391338:8391461,	8390900	8391013	8390951	8390951	Frame_Shift_Del	G	-	p.L496fs
LIHC	TCGA-G3-A3CJ-01	SLC2A9	ENST00000309065.3,ENST00000506583.1,ENST00000264784.3	chr4	9836504:9836632:9889190:9889266:9892233:9892335,	9889191	9889266	9889255	9889255	Frame_Shift_Del	G	-	p.P380fs
LIHC	TCGA-G3-A3CJ-01	CPEB2	ENST00000507071.1,ENST00000509684.1,ENST00000382401.3,ENST00000259997.5,ENST00000345451.3,ENST00000538197.1,ENST00000541112.1,ENST00000442003.2,ENST00000382395.3	chr4	15060044:15060163:15060810:15060925:15063702:15063884,	15060811	15060925	15060890	15060890	Frame_Shift_Del	T	-	p.I887fs
LIHC	TCGA-G3-A3CJ-01	CC2D2A	ENST00000503292.1,ENST00000413206.1,ENST00000506643.1,ENST00000424120.1	chr4	15575772:15575949:15581590:15581794:15587779:15587869,	15581591	15581794	15581612	15581612	Frame_Shift_Del	A	-	p.K1265fs
LIHC	TCGA-G3-A3CJ-01	SLIT2	ENST00000273739.5,ENST00000508824.1,ENST00000503837.1,ENST00000504154.1,ENST00000503823.1	chr4	20270432:20270504:20469374:20469446:20482338:20482410,	20469375	20469446	20469405	20469405	Frame_Shift_Del	C	-	p.I142fs
LIHC	TCGA-G3-A3CJ-01	PACRGL	ENST00000503747.1,ENST00000508952.1	chr4	20706282:20706437:20714410:20714545:20715054:20715084,20711305:20711396:20714410:20714545:20715054:20715084,20709425:20709493:20714410:20714545:20715054:20715084,	20714411	20714545	20714493	20714493	Frame_Shift_Del	A	-	p.E150fs
LIHC	TCGA-G3-A3CJ-01	ZCCHC4	ENST00000302874.4,ENST00000507760.1	chr4	25314416:25314558:25315667:25315786:25316939:25317022,	25315668	25315786	25315703	25315703	Frame_Shift_Del	A	-	p.K55fs
LIHC	TCGA-G3-A3CJ-01	TBC1D19	ENST00000264866.4,ENST00000502873.1,ENST00000515568.1	chr4	26585903:26585914:26614790:26614863:26616029:26616075,	26614791	26614863	26614854	26614854	Frame_Shift_Del	A	-	p.K55fs
LIHC	TCGA-G3-A3CJ-01	STIM2	ENST00000463501.1,ENST00000467087.1,ENST00000467011.1,ENST00000494628.2,ENST00000465503.1,ENST00000237364.5,ENST00000382009.3,ENST00000412829.2	chr4	26997000:26997112:27000853:27000969:27003838:27003850,	27000854	27000969	27000876	27000876	Frame_Shift_Del	T	-	p.F265fs
LIHC	TCGA-G3-A3CJ-01	PGM2	ENST00000537241.1,ENST00000381967.4,ENST00000544359.1,ENST00000505986.1,ENST00000512556.1	chr4	37841687:37841881:37845984:37846174:37847253:37847351,	37845985	37846174	37846127	37846127	Frame_Shift_Del	T	-	p.F288fs
LIHC	TCGA-G3-A3CJ-01	TBC1D1	ENST00000446803.2,ENST00000421339.2,ENST00000261439.4	chr4	38037208:38037319:38051238:38051519:38055819:38055865,38047491:38047524:38051238:38051519:38055819:38055865,	38051239	38051519	38051255	38051255	Frame_Shift_Del	A	-	p.E549fs
LIHC	TCGA-G3-A3CJ-01	TBC1D1	ENST00000443855.1	chr4	38051377:38051519:38053519:38053681:38054726:38054846,38051377:38051519:38053519:38053681:38055819:38055865,	38053520	38053681	38053538	38053538	Frame_Shift_Del	G	-	p.V643fs
LIHC	TCGA-G3-A3CJ-01	TBC1D1	ENST00000261439.4,ENST00000510573.2,ENST00000508802.1	chr4	38091552:38091738:38097549:38097711:38104619:38104778,	38097550	38097711	38097665	38097665	Frame_Shift_Del	A	-	p.S784fs
LIHC	TCGA-G3-A3CJ-01	TBC1D1	ENST00000261439.4,ENST00000511238.1,ENST00000510573.2	chr4	38104668:38104778:38117330:38117575:38119653:38119813,	38117331	38117575	38117501	38117501	Frame_Shift_Del	T	-	p.F910fs
LIHC	TCGA-G3-A3CJ-01	WDR19	ENST00000502389.1,ENST00000503697.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3,ENST00000506503.1	chr4	39187345:39187437:39188158:39188224:39191275:39191401,	39188159	39188224	39188175	39188175	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-G3-A3CJ-01	WDR19	ENST00000512095.1,ENST00000288634.7,ENST00000506869.1,ENST00000399820.3	chr4	39219602:39219725:39226503:39226653:39229829:39229977,	39226504	39226653	39226554	39226554	Frame_Shift_Del	T	-	p.D510fs
LIHC	TCGA-G3-A3CJ-01	RFC1	ENST00000381897.1	chr4	39308211:39308321:39310255:39310652:39313064:39313169,39308253:39308324:39310255:39310652:39313064:39313169,	39310256	39310652	39310598	39310598	Frame_Shift_Del	T	-	p.R515fs
LIHC	TCGA-G3-A3CJ-01	RPL9	ENST00000503040.1	chr4	39456243:39456269:39456483:39456549:39458025:39458158,	39456484	39456549	39456503	39456503	Frame_Shift_Del	A	-	p.I151fs
LIHC	TCGA-G3-A3CJ-01	RPL9	ENST00000504470.1,ENST00000508595.1,ENST00000503277.1,ENST00000514842.1,ENST00000295955.9,ENST00000449470.2	chr4	39456243:39456269:39456483:39456564:39458025:39458125,	39456484	39456564	39456503	39456503	Frame_Shift_Del	A	-	p.I151fs
LIHC	TCGA-G3-A3CJ-01	LIAS	ENST00000261434.3,ENST00000340169.2,ENST00000381846.1,ENST00000515061.1	chr4	39465144:39465225:39466665:39466822:39466904:39466962,	39466666	39466822	39466699	39466699	Frame_Shift_Del	T	-	p.F143fs
LIHC	TCGA-G3-A3CJ-01	LIAS	ENST00000261434.3,ENST00000340169.2	chr4	39466904:39466962:39469137:39469266:39471638:39471784,	39469138	39469266	39469150	39469150	Frame_Shift_Del	C	-	p.I207fs
LIHC	TCGA-G3-A3CJ-01	UGDH	ENST00000501493.2	chr4	39511379:39511527:39511972:39512170:39515702:39515800,	39511973	39512170	39512073	39512073	Frame_Shift_Del	C	-	p.G188fs
LIHC	TCGA-G3-A3CJ-01	UGDH	ENST00000515021.1,ENST00000316423.6,ENST00000509391.1,ENST00000506179.1,ENST00000514106.1	chr4	39512434:39512481:39515702:39515804:39522970:39523095,	39515703	39515804	39515764	39515764	Frame_Shift_Del	T	-	p.N68fs
LIHC	TCGA-G3-A3CJ-01	UGDH	ENST00000503779.1,ENST00000510881.1	chr4	39512434:39512481:39515702:39515800:39522970:39523095,	39515703	39515800	39515764	39515764	Frame_Shift_Del	T	-	p.N68fs
LIHC	TCGA-G3-A3CJ-01	PDS5A	ENST00000303538.8	chr4	39824482:39827108:39839475:39839828:39843567:39843676,	39839476	39839828	39839563	39839563	Frame_Shift_Del	C	-	p.G1308fs
LIHC	TCGA-G3-A3CJ-01	PDS5A	ENST00000303538.8	chr4	39824482:39827108:39839475:39839828:39843567:39843676,	39839476	39839828	39839729	39839729	Frame_Shift_Del	T	-	p.T1253fs
LIHC	TCGA-G3-A3CJ-01	PDS5A	ENST00000303538.8	chr4	39864955:39865079:39868480:39868617:39871013:39871082,	39868481	39868617	39868571	39868571	Frame_Shift_Del	T	-	p.N852fs
LIHC	TCGA-G3-A3CJ-01	PDS5A	ENST00000507020.1,ENST00000303538.8	chr4	39871013:39871082:39874605:39874764:39875908:39876020,	39874606	39874764	39874636	39874636	Frame_Shift_Del	A	-	p.F802fs
LIHC	TCGA-G3-A3CJ-01	PDS5A	ENST00000303538.8	chr4	39874605:39874764:39875908:39876032:39878612:39878773,	39875909	39876032	39876005	39876005	Frame_Shift_Del	T	-	p.K727fs
LIHC	TCGA-G3-A3CJ-01	N4BP2	ENST00000513269.1,ENST00000261435.6,ENST00000511480.1	chr4	40125779:40125825:40127753:40127950:40133420:40133539,	40127754	40127950	40127796	40127796	Frame_Shift_Del	A	-	p.Q1458fs
LIHC	TCGA-G3-A3CJ-01	RBM47	ENST00000510871.1	chr4	40434725:40434879:40438457:40438902:40439787:40440814,	40438458	40438902	40438589	40438589	Frame_Shift_Del	C	-	p.G400fs
LIHC	TCGA-G3-A3CJ-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000514014.1	chr4	40434725:40434879:40438457:40438664:40439787:40440814,	40438458	40438664	40438589	40438589	Frame_Shift_Del	C	-	p.G400fs
LIHC	TCGA-G3-A3CJ-01	TMEM33	ENST00000513702.1,ENST00000508448.1,ENST00000325094.5,ENST00000504986.1	chr4	41940618:41940713:41941212:41941400:41945763:41945831,	41941213	41941400	41941287	41941287	Frame_Shift_Del	A	-	p.Q72fs
LIHC	TCGA-G3-A3CJ-01	SLC30A9	ENST00000513699.1,ENST00000505523.1,ENST00000264451.7	chr4	42077673:42077803:42080228:42080342:42088098:42088386,	42080229	42080342	42080287	42080287	Frame_Shift_Del	A	-	p.E536fs
LIHC	TCGA-G3-A3CJ-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42551029:42551079:42553214:42553297:42554521:42554627,	42553215	42553297	42553252	42553252	Frame_Shift_Del	A	-	p.F522fs
LIHC	TCGA-G3-A3CJ-01	GUF1	ENST00000513775.1,ENST00000506793.1,ENST00000281543.5	chr4	44688592:44688730:44690023:44690163:44691302:44691426,	44690024	44690163	44690136	44690136	Frame_Shift_Del	A	-	p.K351fs
LIHC	TCGA-G3-A3CJ-01	NFXL1	ENST00000464756.2,ENST00000381538.3,ENST00000507131.1,ENST00000507489.1,ENST00000329043.3	chr4	47900975:47901137:47901386:47901565:47905209:47905340,	47901387	47901565	47901427	47901427	Frame_Shift_Del	T	-	p.K262fs
LIHC	TCGA-G3-A3CJ-01	TXK	ENST00000514937.1	chr4	48073533:48073691:48078418:48078483:48081928:48082083,	48078419	48078483	48078467	48078467	Frame_Shift_Del	A	-	p.L397fs
LIHC	TCGA-G3-A3CJ-01	FRYL	ENST00000512810.1,ENST00000264319.7,ENST00000503339.1,ENST00000507873.2	chr4	48502046:48502237:48503639:48503750:48507563:48507632,	48503640	48503750	48503650	48503650	Frame_Shift_Del	T	-	p.N2861fs
LIHC	TCGA-G3-A3CJ-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000507711.1	chr4	48607757:48607850:48608454:48608623:48611003:48611084,	48608455	48608623	48608570	48608570	Frame_Shift_Del	T	-	p.K209fs
LIHC	TCGA-G3-A3CJ-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000507711.1	chr4	48607757:48607850:48608454:48608623:48611003:48611084,	48608455	48608623	48608599	48608599	Frame_Shift_Del	A	-	p.F199fs
LIHC	TCGA-G3-A3CJ-01	OCIAD1	ENST00000512981.1,ENST00000505922.2,ENST00000503016.1,ENST00000512236.1,ENST00000444354.2,ENST00000511102.1,ENST00000510824.1,ENST00000508293.1,ENST00000506801.1,ENST00000396448.2,ENST00000425583.2,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000509246.1,ENST00000381473.3	chr4	48850415:48850463:48851963:48852099:48853822:48853916,	48851964	48852099	48852045	48852045	Frame_Shift_Del	C	-	p.S108fs
LIHC	TCGA-G3-A3CJ-01	OCIAD2	ENST00000510159.1	chr4	48899857:48899874:48901845:48901942:48906500:48906628,48899820:48899852:48901845:48901942:48906500:48906628,	48901846	48901942	48901857	48901857	Frame_Shift_Del	A	-	p.F51fs
LIHC	TCGA-G3-A3CJ-01	CWH43	ENST00000513409.1,ENST00000226432.4,ENST00000514053.2	chr4	49032841:49032977:49034582:49034732:49040052:49040197,	49034583	49034732	49034646	49034646	Frame_Shift_Del	G	-	p.E524fs
LIHC	TCGA-G3-A3CJ-01	DCUN1D4	ENST00000507659.1,ENST00000381437.4,ENST00000334635.5,ENST00000507741.1,ENST00000451288.2	chr4	52757972:52758017:52777235:52777340:52779455:52779558,52765502:52765544:52777235:52777340:52779455:52779558,	52777236	52777340	52777321	52777321	Frame_Shift_Del	T	-	p.V234fs
LIHC	TCGA-G3-A3CJ-01	SPATA18	ENST00000508915.1	chr4	52928385:52928498:52935986:52936082:52938082:52938179,52917581:52917957:52935986:52936082:52938082:52938179,	52935987	52936082	52936001	52936001	Frame_Shift_Del	A	-	p.E146fs
LIHC	TCGA-G3-A3CJ-01	SPATA18	ENST00000511028.1,ENST00000419395.2,ENST00000505320.1,ENST00000295213.4	chr4	52942944:52943206:52944900:52945059:52945909:52946066,	52944901	52945059	52944918	52944918	Frame_Shift_Del	A	-	p.A346fs
LIHC	TCGA-G3-A3CJ-01	SPATA18	ENST00000511028.1,ENST00000419395.2,ENST00000505320.1,ENST00000295213.4	chr4	52944900:52945059:52945909:52946085:52948552:52948676,	52945910	52946085	52946070	52946070	Frame_Shift_Del	T	-	p.V447fs
LIHC	TCGA-G3-A3CJ-01	LNX1	ENST00000263925.7	chr4	54374152:54374394:54439789:54440255:54457554:54457682,	54439790	54440255	54439983	54439983	Frame_Shift_Del	G	-	p.L63fs
LIHC	TCGA-G3-A3CJ-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56737266:56737399:56738014:56738124:56744082:56744232,	56738015	56738124	56738111	56738111	Frame_Shift_Del	T	-	p.V354fs
LIHC	TCGA-G3-A3CJ-01	CEP135	ENST00000257287.4,ENST00000506202.1	chr4	56851446:56851524:56858099:56858251:56865467:56865583,	56858100	56858251	56858110	56858110	Frame_Shift_Del	A	-	p.E623fs
LIHC	TCGA-G3-A3CJ-01	AASDH	ENST00000205214.6,ENST00000514745.1,ENST00000434343.2,ENST00000602986.1,ENST00000513376.1,ENST00000503808.1	chr4	57204770:57204957:57209000:57209132:57209727:57209850,	57209001	57209132	57209094	57209094	Frame_Shift_Del	T	-	p.K938fs
LIHC	TCGA-G3-A3CJ-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1,ENST00000513376.1	chr4	57237616:57237809:57244313:57244630:57248642:57248763,	57244314	57244630	57244539	57244539	Frame_Shift_Del	T	-	p.N148fs
LIHC	TCGA-G3-A3CJ-01	PAICS	ENST00000264221.2,ENST00000505164.1,ENST00000512576.1,ENST00000514888.1	chr4	57302427:57302494:57307828:57308026:57312860:57313039,	57307829	57308026	57307950	57307950	Frame_Shift_Del	A	-	p.R46fs
LIHC	TCGA-G3-A3CJ-01	POLR2B	ENST00000441246.2,ENST00000381227.1,ENST00000314595.5,ENST00000431623.2	chr4	57872981:57873168:57876526:57876670:57876913:57877053,	57876527	57876670	57876623	57876623	Frame_Shift_Del	T	-	p.L501fs
LIHC	TCGA-G3-A3CJ-01	POLR2B	ENST00000441246.2,ENST00000478188.1,ENST00000381227.1,ENST00000314595.5,ENST00000431623.2	chr4	57887064:57887161:57888317:57888412:57889495:57889746,	57888318	57888412	57888355	57888355	Frame_Shift_Del	A	-	p.K821fs
LIHC	TCGA-G3-A3CJ-01	EPHA5	ENST00000511294.1,ENST00000273854.3,ENST00000354839.4	chr4	66286158:66286283:66356094:66356430:66361105:66361261,	66356095	66356430	66356248	66356248	Frame_Shift_Del	G	-	p.R417fs
LIHC	TCGA-G3-A3CJ-01	CENPC	ENST00000513216.1,ENST00000273853.6,ENST00000506882.1	chr4	68338199:68338393:68340605:68340696:68355684:68355839,	68340606	68340696	68340651	68340651	Frame_Shift_Del	T	-	p.T906fs
LIHC	TCGA-G3-A3CJ-01	CENPC	ENST00000513216.1,ENST00000515140.1	chr4	68357897:68357993:68358468:68358715:68359601:68359706,	68358469	68358715	68358627	68358627	Frame_Shift_Del	T	-	p.K793fs
LIHC	TCGA-G3-A3CJ-01	CENPC	ENST00000273853.6,ENST00000506882.1	chr4	68357897:68357993:68358586:68358715:68359601:68359706,	68358587	68358715	68358627	68358627	Frame_Shift_Del	T	-	p.K793fs
LIHC	TCGA-G3-A3CJ-01	STAP1	ENST00000396225.1,ENST00000265404.2	chr4	68447022:68447189:68449291:68449420:68456601:68456671,	68449292	68449420	68449295	68449295	Frame_Shift_Del	T	-	p.C178fs
LIHC	TCGA-G3-A3CJ-01	TMPRSS11D	ENST00000505533.1,ENST00000283916.6,ENST00000545541.1	chr4	68691524:68691592:68692978:68693238:68698921:68699099,	68692979	68693238	68692996	68692996	Frame_Shift_Del	C	-	p.G312fs
LIHC	TCGA-G3-A3CJ-01	TMPRSS11D	ENST00000502822.1	chr4	68719785:68719904:68725274:68725396:68749643:68749678,	68725275	68725396	68725326	68725326	Frame_Shift_Del	C	-	p.V28fs
LIHC	TCGA-G3-A3CJ-01	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69095147	69095147	Frame_Shift_Del	A	-	p.F258fs
LIHC	TCGA-G3-A3CJ-01	YTHDC1	ENST00000355665.3,ENST00000579690.1,ENST00000344157.4	chr4	69195719:69195837:69195919:69196028:69197820:69197915,	69195920	69196028	69195927	69195927	Frame_Shift_Del	T	-	p.K408fs
LIHC	TCGA-G3-A3CJ-01	TMPRSS11E	ENST00000305363.4	chr4	69334596:69334664:69337177:69337341:69340440:69340479,	69337178	69337341	69337305	69337305	Frame_Shift_Del	C	-	p.P153fs
LIHC	TCGA-G3-A3CJ-01	AMTN	ENST00000339336.4,ENST00000504451.1	chr4	71389584:71389650:71390588:71390678:71394439:71394475,	71390589	71390678	71390620	71390620	Frame_Shift_Del	C	-	p.T79fs
LIHC	TCGA-G3-A3CJ-01	MOB1B	ENST00000396051.2,ENST00000309395.2	chr4	71840869:71841003:71844844:71845008:71847696:71847959,	71844845	71845008	71844953	71844953	Frame_Shift_Del	T	-	p.L173fs
LIHC	TCGA-G3-A3CJ-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000340595.3,ENST00000351898.6	chr4	72352664:72352735:72363217:72363409:72397778:72397892,	72363218	72363409	72363233	72363233	Frame_Shift_Del	T	-	p.F620fs
LIHC	TCGA-G3-A3CJ-01	GC	ENST00000504199.1	chr4	72635047:72635117:72649677:72649771:72669642:72669758,	72649678	72649771	72649735	72649735	Frame_Shift_Del	T	-	p.M20fs
LIHC	TCGA-G3-A3CJ-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73956566	73956566	Frame_Shift_Del	T	-	p.N2260fs
LIHC	TCGA-G3-A3CJ-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73957348	73957348	Frame_Shift_Del	A	-	p.F1999fs
LIHC	TCGA-G3-A3CJ-01	ANKRD17	ENST00000558247.1,ENST00000561029.1,ENST00000330838.6,ENST00000560372.1,ENST00000509867.2,ENST00000358602.4,ENST00000514252.1	chr4	73981537:73981633:73984404:73984567:73985878:73986054,	73984405	73984567	73984549	73984549	Frame_Shift_Del	T	-	p.V1348fs
LIHC	TCGA-G3-A3CJ-01	ALB	ENST00000510166.1	chr4	74270085:74270123:74270837:74270890:74272345:74272478,	74270838	74270890	74270883	74270883	Frame_Shift_Del	A	-	p.K44fs
LIHC	TCGA-G3-A3CJ-01	ALB	ENST00000401494.3	chr4	74270085:74270123:74270832:74270890:74272345:74272478,74270017:74270123:74270832:74270890:74275071:74275204,	74270833	74270890	74270883	74270883	Frame_Shift_Del	A	-	p.K44fs
LIHC	TCGA-G3-A3CJ-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74310709:74310839:74313178:74313393:74315051:74315184,	74313179	74313393	74313319	74313319	Frame_Shift_Del	A	-	p.P328fs
LIHC	TCGA-G3-A3CJ-01	RASSF6	ENST00000307439.5,ENST00000342081.3,ENST00000335049.5,ENST00000395777.2	chr4	74450896:74451081:74453556:74453651:74459167:74459310,	74453557	74453651	74453572	74453572	Frame_Shift_Del	T	-	p.R123fs
LIHC	TCGA-G3-A3CJ-01	PARM1	ENST00000307428.7	chr4	75858325:75858580:75937634:75938360:75959092:75959171,	75937635	75938360	75937731	75937731	Frame_Shift_Del	A	-	p.Q47fs
LIHC	TCGA-G3-A3CJ-01	RCHY1	ENST00000514589.1,ENST00000512706.1,ENST00000505514.1,ENST00000380840.2,ENST00000513083.1,ENST00000505105.1,ENST00000451788.1,ENST00000513257.1,ENST00000324439.5,ENST00000507014.1	chr4	76417120:76417143:76419310:76419389:76434029:76434145,	76419311	76419389	76419357	76419357	Frame_Shift_Del	A	-	p.L120fs
LIHC	TCGA-G3-A3CJ-01	RCHY1	ENST00000514589.1,ENST00000513083.1,ENST00000505105.1,ENST00000451788.1,ENST00000513257.1,ENST00000504085.1	chr4	76434033:76434145:76434386:76434506:76439406:76439496,	76434387	76434506	76434460	76434460	Frame_Shift_Del	T	-	p.N47fs
LIHC	TCGA-G3-A3CJ-01	THAP6	ENST00000311638.3,ENST00000514480.1	chr4	76441981:76442189:76446945:76447071:76465068:76465169,76441981:76442189:76446945:76447071:76452169:76452424,	76446946	76447071	76446972	76446972	Frame_Shift_Del	A	-	p.R105fs
LIHC	TCGA-G3-A3CJ-01	G3BP2	ENST00000357854.3,ENST00000395719.3,ENST00000359707.4	chr4	76569572:76570886:76571521:76571640:76572212:76572341,	76571522	76571640	76571592	76571592	Frame_Shift_Del	C	-	p.G369fs
LIHC	TCGA-G3-A3CJ-01	USO1	ENST00000264904.6,ENST00000514213.2	chr4	76711795:76711950:76714842:76715054:76720774:76720885,	76714843	76715054	76714890	76714890	Frame_Shift_Del	T	-	p.F432fs
LIHC	TCGA-G3-A3CJ-01	PPEF2	ENST00000511880.3,ENST00000286719.7	chr4	76788465:76788572:76793177:76793320:76794279:76794465,	76793178	76793320	76793242	76793242	Frame_Shift_Del	G	-	p.L529fs
LIHC	TCGA-G3-A3CJ-01	SDAD1	ENST00000513089.1,ENST00000395711.4,ENST00000507396.1,ENST00000395710.1,ENST00000356260.5	chr4	76891461:76891531:76892509:76892611:76894469:76894544,	76892510	76892611	76892564	76892564	Frame_Shift_Del	C	-	p.G253fs
LIHC	TCGA-G3-A3CJ-01	SDAD1	ENST00000395711.4,ENST00000503411.1,ENST00000395710.1,ENST00000356260.5	chr4	76894512:76894544:76895228:76895286:76896896:76896997,	76895229	76895286	76895273	76895273	Frame_Shift_Del	T	-	p.T198fs
LIHC	TCGA-G3-A3CJ-01	NUP54	ENST00000502850.1	chr4	77052382:77052437:77053675:77053872:77065301:77065445,	77053676	77053872	77053788	77053788	Frame_Shift_Del	A	-	p.F265fs
LIHC	TCGA-G3-A3CJ-01	NUP54	ENST00000264883.3,ENST00000514987.1,ENST00000342467.6	chr4	77053675:77053872:77055327:77055515:77065301:77065445,77053675:77053872:77055327:77055515:77057338:77057565,	77055328	77055515	77055379	77055379	Frame_Shift_Del	T	-	p.N220fs
LIHC	TCGA-G3-A3CJ-01	CCDC158	ENST00000504667.1,ENST00000388914.3	chr4	77276476:77276589:77278526:77278679:77283278:77283468,	77278527	77278679	77278594	77278594	Frame_Shift_Del	T	-	p.K702fs
LIHC	TCGA-G3-A3CJ-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660148	77660148	Frame_Shift_Del	C	-	p.H274fs
LIHC	TCGA-G3-A3CJ-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660834	77660834	Frame_Shift_Del	C	-	p.A503fs
LIHC	TCGA-G3-A3CJ-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77661738	77661738	Frame_Shift_Del	T	-	p.G804fs
LIHC	TCGA-G3-A3CJ-01	SHROOM3	ENST00000469923.1	chr4	77661131:77663079:77670169:77670243:77675463:77675739,77651956:77652088:77670169:77670243:77675463:77675739,	77670170	77670243	77670181	77670181	Frame_Shift_Del	G	-	p.L1255fs
LIHC	TCGA-G3-A3CJ-01	SHROOM3	ENST00000296043.6	chr4	77680697:77680848:77691778:77692051:77699961:77704406,	77691779	77692051	77692047	77692047	Frame_Shift_Del	A	-	p.E1873fs
LIHC	TCGA-G3-A3CJ-01	CCNI	ENST00000537948.1,ENST00000237654.4,ENST00000505609.1,ENST00000504697.1	chr4	77977217:77977255:77977401:77977476:77979659:77979788,	77977402	77977476	77977433	77977433	Frame_Shift_Del	A	-	p.F96fs
LIHC	TCGA-G3-A3CJ-01	CNOT6L	ENST00000515506.1,ENST00000512485.1,ENST00000504804.1,ENST00000504123.1,ENST00000264903.4	chr4	78663356:78663449:78665871:78666029:78669469:78669538,	78665872	78666029	78665924	78665924	Frame_Shift_Del	T	-	p.K222fs
LIHC	TCGA-G3-A3CJ-01	MRPL1	ENST00000315567.8,ENST00000511521.1	chr4	78792897:78793009:78804395:78804654:78806409:78806472,	78804396	78804654	78804516	78804516	Frame_Shift_Del	A	-	p.L88fs
LIHC	TCGA-G3-A3CJ-01	FRAS1	ENST00000502446.1,ENST00000264895.6,ENST00000325942.6,ENST00000264899.6	chr4	79173545:79173705:79176395:79176529:79186178:79186262,	79176396	79176529	79176461	79176461	Frame_Shift_Del	A	-	p.K179fs
LIHC	TCGA-G3-A3CJ-01	FRAS1	ENST00000264895.6,ENST00000325942.6	chr4	79296892:79297033:79300879:79301150:79305212:79305297,	79300880	79301150	79300901	79300901	Frame_Shift_Del	T	-	p.L1105fs
LIHC	TCGA-G3-A3CJ-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79373328:79373508:79385174:79385299:79385596:79385737,	79385175	79385299	79385192	79385192	Frame_Shift_Del	T	-	p.F2261fs
LIHC	TCGA-G3-A3CJ-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79402957:79403118:79403541:79403689:79410028:79410234,	79403542	79403689	79403671	79403671	Frame_Shift_Del	A	-	p.N2912fs
LIHC	TCGA-G3-A3CJ-01	BMP2K	ENST00000502613.1,ENST00000335016.5	chr4	79799887:79800045:79808327:79808438:79831763:79833339,	79808328	79808438	79808407	79808407	Frame_Shift_Del	T	-	p.P677fs
LIHC	TCGA-G3-A3CJ-01	HNRNPD	ENST00000513584.1,ENST00000541060.1	chr4	83278589:83278597:83279811:83279973:83280623:83280792,83278589:83278597:83279811:83279973:83294598:83294639,	83279812	83279973	83279914	83279914	Frame_Shift_Del	T	-	p.K173fs
LIHC	TCGA-G3-A3CJ-01	HNRNPDL	ENST00000502762.1,ENST00000602300.1,ENST00000295470.5,ENST00000507721.1,ENST00000514511.1	chr4	83347189:83347282:83347615:83347786:83348342:83348344,	83347616	83347786	83347665	83347665	Frame_Shift_Del	C	-	p.G381fs
LIHC	TCGA-G3-A3CJ-01	HNRNPDL	ENST00000514511.1	chr4	83348342:83348457:83348585:83348717:83349170:83349332,83348342:83348457:83348585:83348717:83350400:83350578,	83348586	83348717	83348625	83348625	Frame_Shift_Del	T	-	p.K289fs
LIHC	TCGA-G3-A3CJ-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84374447	84374447	Frame_Shift_Del	A	-	p.Y317fs
LIHC	TCGA-G3-A3CJ-01	CDS1	ENST00000295887.5	chr4	85556416:85556504:85560076:85560145:85561990:85562143,	85560077	85560145	85560134	85560134	Frame_Shift_Del	T	-	p.F290fs
LIHC	TCGA-G3-A3CJ-01	WDFY3	ENST00000295888.4,ENST00000322366.6,ENST00000425179.2	chr4	85599320:85599432:85600071:85600395:85603526:85603623,	85600072	85600395	85600129	85600129	Frame_Shift_Del	G	-	p.L3347fs
LIHC	TCGA-G3-A3CJ-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85752565:85752758:85758081:85758243:85762306:85762416,	85758082	85758243	85758088	85758088	Frame_Shift_Del	A	-	p.F190fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP24	ENST00000514229.1	chr4	86749045:86749128:86844800:86844923:86863218:86863358,	86844801	86844923	86844906	86844906	Frame_Shift_Del	G	-	p.W125fs
LIHC	TCGA-G3-A3CJ-01	MAPK10	ENST00000359221.3,ENST00000395161.2,ENST00000395160.3,ENST00000395169.3,ENST00000361569.2,ENST00000395157.3,ENST00000395166.1	chr4	86988976:86989108:87019676:87019748:87022204:87022367,	87019677	87019748	87019698	87019698	Frame_Shift_Del	T	-	p.I223fs
LIHC	TCGA-G3-A3CJ-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6,ENST00000502971.1,ENST00000507902.1	chr4	87556404:87556524:87593517:87593696:87607862:87607928,	87593518	87593696	87593559	87593559	Frame_Shift_Del	C	-	p.P53fs
LIHC	TCGA-G3-A3CJ-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6,ENST00000502971.1,ENST00000507902.1	chr4	87593517:87593696:87607862:87607928:87610157:87610214,	87607863	87607928	87607897	87607897	Frame_Shift_Del	G	-	p.W110fs
LIHC	TCGA-G3-A3CJ-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87656746:87656899:87662786:87662969:87666118:87666281,	87662787	87662969	87662819	87662819	Frame_Shift_Del	T	-	p.H779fs
LIHC	TCGA-G3-A3CJ-01	AFF1	ENST00000395146.4,ENST00000544085.1	chr4	88052944:88053016:88053422:88053560:88055625:88055846,88052944:88053016:88053422:88053560:88055622:88055846,	88053423	88053560	88053440	88053440	Frame_Shift_Del	T	-	p.I1057fs
LIHC	TCGA-G3-A3CJ-01	AFF1	ENST00000395146.4,ENST00000544085.1	chr4	88052944:88053016:88053422:88053560:88055625:88055846,88052944:88053016:88053422:88053560:88055622:88055846,	88053423	88053560	88053466	88053466	Frame_Shift_Del	A	-	p.K1067fs
LIHC	TCGA-G3-A3CJ-01	KLHL8	ENST00000498875.2	chr4	88104354:88104541:88106402:88106723:88116475:88116842,	88106403	88106723	88106414	88106414	Frame_Shift_Del	T	-	p.T252fs
LIHC	TCGA-G3-A3CJ-01	KLHL8	ENST00000273963.5,ENST00000512111.1	chr4	88104354:88104541:88106402:88106951:88116475:88116842,	88106403	88106951	88106414	88106414	Frame_Shift_Del	T	-	p.T252fs
LIHC	TCGA-G3-A3CJ-01	NUDT9	ENST00000512216.1,ENST00000473942.1,ENST00000302174.4	chr4	88359428:88359524:88362980:88363067:88370293:88370405,	88362981	88363067	88363023	88363023	Frame_Shift_Del	G	-	p.L112fs
LIHC	TCGA-G3-A3CJ-01	ABCG2	ENST00000505480.1	chr4	89053727:89053787:89060944:89061166:89079537:89080064,89053727:89053787:89060944:89061166:89079728:89079823,	89060945	89061166	89061031	89061031	Frame_Shift_Del	A	-	p.F39fs
LIHC	TCGA-G3-A3CJ-01	ABCG2	ENST00000505480.1	chr4	89053727:89053787:89060944:89061166:89079537:89080064,89053727:89053787:89060944:89061166:89079728:89079823,	89060945	89061166	89061114	89061114	Frame_Shift_Del	C	-	p.V12fs
LIHC	TCGA-G3-A3CJ-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000506714.1	chr4	89300215:89300272:89304372:89304532:89306650:89306727,	89304373	89304532	89304507	89304507	Frame_Shift_Del	T	-	p.F112fs
LIHC	TCGA-G3-A3CJ-01	HERC6	ENST00000504905.1	chr4	89300215:89300272:89304383:89304532:89306650:89306727,	89304384	89304532	89304507	89304507	Frame_Shift_Del	T	-	p.F112fs
LIHC	TCGA-G3-A3CJ-01	HERC6	ENST00000502870.1	chr4	89300215:89300272:89304336:89304532:89306650:89306727,	89304337	89304532	89304507	89304507	Frame_Shift_Del	T	-	p.F112fs
LIHC	TCGA-G3-A3CJ-01	HERC6	ENST00000264346.7,ENST00000273960.3,ENST00000380265.5,ENST00000506714.1	chr4	89306650:89306727:89311803:89312031:89314639:89314734,	89311804	89312031	89311981	89311981	Frame_Shift_Del	G	-	p.W205fs
LIHC	TCGA-G3-A3CJ-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89414162:89414306:89415315:89415482:89421076:89421143,	89415316	89415482	89415395	89415395	Frame_Shift_Del	T	-	p.L786fs
LIHC	TCGA-G3-A3CJ-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90856360	90856360	Frame_Shift_Del	T	-	p.L510fs
LIHC	TCGA-G3-A3CJ-01	SMARCAD1	ENST00000457823.2,ENST00000394961.2,ENST00000359052.4,ENST00000354268.4	chr4	95158102:95158169:95162056:95162157:95170804:95170906,	95162057	95162157	95162136	95162136	Frame_Shift_Del	A	-	p.I228fs
LIHC	TCGA-G3-A3CJ-01	SMARCAD1	ENST00000509418.1	chr4	95174444:95174822:95185857:95186057:95191878:95191969,	95185858	95186057	95186049	95186049	Frame_Shift_Del	A	-	p.L491fs
LIHC	TCGA-G3-A3CJ-01	RAP1GDS1	ENST00000408927.3,ENST00000264572.7,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000408900.3	chr4	99325627:99325753:99337895:99338039:99338517:99338649,	99337896	99338039	99338022	99338022	Frame_Shift_Del	T	-	p.V297fs
LIHC	TCGA-G3-A3CJ-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000506705.1,ENST00000505590.1	chr4	100047744:100047883:100048359:100048495:100052654:100052915,	100048360	100048495	100048449	100048449	Frame_Shift_Del	A	-	p.F316fs
LIHC	TCGA-G3-A3CJ-01	EMCN	ENST00000296420.4,ENST00000305864.3,ENST00000502569.1,ENST00000512253.1,ENST00000502327.1,ENST00000511970.1	chr4	101386657:101386696:101396194:101396266:101401073:101401196,	101396195	101396266	101396212	101396212	Frame_Shift_Del	A	-	p.L81fs
LIHC	TCGA-G3-A3CJ-01	EMCN	ENST00000296420.4,ENST00000305864.3,ENST00000502569.1,ENST00000512253.1,ENST00000502327.1,ENST00000511970.1	chr4	101386657:101386696:101396194:101396266:101401073:101401196,	101396195	101396266	101396225	101396225	Frame_Shift_Del	T	-	p.T77fs
LIHC	TCGA-G3-A3CJ-01	PPP3CA	ENST00000394854.3,ENST00000394853.4,ENST00000323055.6	chr4	102030110:102030235:102117072:102117273:102267895:102267953,	102117073	102117273	102117102	102117102	Frame_Shift_Del	T	-	p.N77fs
LIHC	TCGA-G3-A3CJ-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751092	102751092	Frame_Shift_Del	T	-	p.S51fs
LIHC	TCGA-G3-A3CJ-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951317	102951317	Frame_Shift_Del	A	-	p.K585fs
LIHC	TCGA-G3-A3CJ-01	NFKB1	ENST00000505458.1,ENST00000510638.1,ENST00000394820.4,ENST00000226574.4	chr4	103498032:103498196:103500037:103500196:103501691:103501745,	103500038	103500196	103500044	103500044	Frame_Shift_Del	A	-	p.E193fs
LIHC	TCGA-G3-A3CJ-01	MANBA	ENST00000226578.4,ENST00000505239.1,ENST00000514430.1	chr4	103571693:103571858:103578838:103579057:103585841:103586009,	103578839	103579057	103579012	103579012	Frame_Shift_Del	C	-	p.A511fs
LIHC	TCGA-G3-A3CJ-01	SLC9B1	ENST00000514340.1,ENST00000296422.7,ENST00000394789.3	chr4	103853280:103853456:103866349:103866477:103867803:103867946,	103866350	103866477	103866396	103866396	Frame_Shift_Del	A	-	p.S203fs
LIHC	TCGA-G3-A3CJ-01	SLC9B1	ENST00000296422.7,ENST00000394789.3,ENST00000514972.1	chr4	103867803:103867946:103870413:103870584:103910956:103911098,	103870414	103870584	103870542	103870542	Frame_Shift_Del	A	-	p.L85fs
LIHC	TCGA-G3-A3CJ-01	SLC9B1	ENST00000510243.1,ENST00000503584.1	chr4	103853280:103853456:103910956:103911098:103912799:103912869,	103910957	103911098	103911013	103911013	Frame_Shift_Del	T	-	p.K52fs
LIHC	TCGA-G3-A3CJ-01	CENPE	ENST00000265148.3	chr4	104059507:104059606:104060945:104061236:104061412:104061571,	104060946	104061236	104061121	104061121	Frame_Shift_Del	T	-	p.N2010fs
LIHC	TCGA-G3-A3CJ-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104061412:104061571:104061970:104062261:104062906:104063065,	104061971	104062261	104062154	104062154	Frame_Shift_Del	T	-	p.K1857fs
LIHC	TCGA-G3-A3CJ-01	CENPE	ENST00000265148.3,ENST00000380026.3	chr4	104062906:104063065:104064404:104064563:104065487:104065775,	104064405	104064563	104064467	104064467	Frame_Shift_Del	T	-	p.T1748fs
LIHC	TCGA-G3-A3CJ-01	CENPE	ENST00000265148.3,ENST00000380026.3,ENST00000503705.1	chr4	104072392:104072534:104074203:104074407:104079456:104079615,	104074204	104074407	104074387	104074387	Frame_Shift_Del	T	-	p.K1018fs
LIHC	TCGA-G3-A3CJ-01	CENPE	ENST00000265148.3,ENST00000380026.3,ENST00000503705.1	chr4	104115759:104115841:104116270:104116390:104117076:104117195,	104116271	104116390	104116303	104116303	Frame_Shift_Del	T	-	p.M149fs
LIHC	TCGA-G3-A3CJ-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155499	106155499	Frame_Shift_Del	G	-	p.G134fs
LIHC	TCGA-G3-A3CJ-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156759	106156759	Frame_Shift_Del	C	-	p.P555fs
LIHC	TCGA-G3-A3CJ-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156936	106156936	Frame_Shift_Del	G	-	p.G614fs
LIHC	TCGA-G3-A3CJ-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157939	106157939	Frame_Shift_Del	A	-	p.Q947fs
LIHC	TCGA-G3-A3CJ-01	TET2	ENST00000545826.1,ENST00000265149.5,ENST00000380013.4,ENST00000540549.1,ENST00000513237.1	chr4	106163990:106164084:106164726:106164935:106180775:106180926,	106164727	106164935	106164773	106164773	Frame_Shift_Del	G	-	p.R1214fs
LIHC	TCGA-G3-A3CJ-01	GSTCD	ENST00000515279.1,ENST00000484843.1	chr4	106629974:106630173:106638749:106639196:106640216:106640290,	106638750	106639196	106638849	106638849	Frame_Shift_Del	T	-	p.F27fs
LIHC	TCGA-G3-A3CJ-01	GSTCD	ENST00000507281.1,ENST00000394730.3	chr4	106629974:106630173:106638749:106638935:106640216:106640290,	106638750	106638935	106638849	106638849	Frame_Shift_Del	T	-	p.F27fs
LIHC	TCGA-G3-A3CJ-01	TBCK	ENST00000467183.2,ENST00000394708.2,ENST00000432496.2,ENST00000514689.1,ENST00000510927.1,ENST00000394706.3,ENST00000515705.1,ENST00000361687.4,ENST00000273980.5	chr4	107037475:107037535:107092251:107092427:107114765:107114927,	107092252	107092427	107092383	107092383	Frame_Shift_Del	A	-	p.C702fs
LIHC	TCGA-G3-A3CJ-01	PAPSS1	ENST00000265174.4	chr4	108534821:108535543:108552786:108553016:108565957:108566226,	108552787	108553016	108552914	108552914	Frame_Shift_Del	A	-	p.Y537fs
LIHC	TCGA-G3-A3CJ-01	PAPSS1	ENST00000514489.1,ENST00000502431.1,ENST00000265174.4	chr4	108608284:108608333:108614926:108615162:108622326:108622441,	108614927	108615162	108615035	108615035	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-G3-A3CJ-01	SGMS2	ENST00000394684.4	chr4	108779627:108779709:108816465:108817164:108820730:108820848,	108816466	108817164	108816750	108816750	Frame_Shift_Del	A	-	p.E14fs
LIHC	TCGA-G3-A3CJ-01	SGMS2	ENST00000394686.3,ENST00000359079.4,ENST00000394684.4	chr4	108824388:108824542:108829720:108829887:108831505:108832109,	108829721	108829887	108829855	108829855	Frame_Shift_Del	T	-	p.F288fs
LIHC	TCGA-G3-A3CJ-01	ETNPPL	ENST00000296486.3,ENST00000510706.1,ENST00000512646.1,ENST00000411864.2	chr4	109667554:109667685:109667917:109668007:109669160:109669315,	109667918	109668007	109668005	109668005	Frame_Shift_Del	C	-	p.G362fs
LIHC	TCGA-G3-A3CJ-01	COL25A1	ENST00000399126.1,ENST00000505377.1,ENST00000494183.1,ENST00000399132.1	chr4	109745329:109745383:109746351:109746378:109748290:109748344,	109746352	109746378	109746359	109746359	Frame_Shift_Del	C	-	p.G595fs
LIHC	TCGA-G3-A3CJ-01	COL25A1	ENST00000399126.1,ENST00000494183.1,ENST00000399132.1	chr4	109782082:109782127:109783656:109783701:109784474:109784543,	109783657	109783701	109783670	109783670	Frame_Shift_Del	G	-	p.P395fs
LIHC	TCGA-G3-A3CJ-01	COL25A1	ENST00000399127.1,ENST00000399126.1,ENST00000494183.1,ENST00000399132.1	chr4	109790243:109790306:109805333:109805378:109810376:109810412,	109805334	109805378	109805358	109805358	Frame_Shift_Del	C	-	p.G332fs
LIHC	TCGA-G3-A3CJ-01	SEC24B	ENST00000399100.2	chr4	110384056:110384800:110394159:110394342:110402832:110402937,110384056:110384800:110394159:110394342:110412482:110412563,	110394160	110394342	110394170	110394170	Frame_Shift_Del	T	-	p.S296fs
LIHC	TCGA-G3-A3CJ-01	SEC24B	ENST00000265175.5,ENST00000504968.2,ENST00000399100.2	chr4	110448477:110448588:110451444:110451620:110452540:110452678,	110451445	110451620	110451601	110451601	Frame_Shift_Del	T	-	p.V1078fs
LIHC	TCGA-G3-A3CJ-01	EGF	ENST00000503392.1,ENST00000265171.5,ENST00000509793.1,ENST00000502723.1	chr4	110862101:110862301:110864409:110864591:110864997:110865128,	110864410	110864591	110864428	110864428	Frame_Shift_Del	A	-	p.K116fs
LIHC	TCGA-G3-A3CJ-01	EGF	ENST00000509793.1	chr4	110866228:110866431:110882022:110882145:110883018:110883141,	110882023	110882145	110882039	110882039	Frame_Shift_Del	T	-	p.A361fs
LIHC	TCGA-G3-A3CJ-01	ELOVL6	ENST00000302274.3,ENST00000506625.1,ENST00000394607.3	chr4	110972881:110972918:110980758:110980910:111026652:111026784,	110980759	110980910	110980772	110980772	Frame_Shift_Del	T	-	p.K120fs
LIHC	TCGA-G3-A3CJ-01	ENPEP	ENST00000265162.5	chr4	111412188:111412320:111427792:111427913:111430808:111430963,	111427793	111427913	111427870	111427870	Frame_Shift_Del	T	-	p.Y332fs
LIHC	TCGA-G3-A3CJ-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113353202	113353202	Frame_Shift_Del	A	-	p.R833fs
LIHC	TCGA-G3-A3CJ-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113353265	113353265	Frame_Shift_Del	G	-	p.E854fs
LIHC	TCGA-G3-A3CJ-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409fs
LIHC	TCGA-G3-A3CJ-01	ANK2	ENST00000394537.3,ENST00000503271.1,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1	chr4	114251401:114251626:114253127:114253226:114254209:114254364,	114253128	114253226	114253153	114253153	Frame_Shift_Del	C	-	p.P1052fs
LIHC	TCGA-G3-A3CJ-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275575	114275575	Frame_Shift_Del	A	-	p.E1934fs
LIHC	TCGA-G3-A3CJ-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278579	114278579	Frame_Shift_Del	T	-	p.S2935fs
LIHC	TCGA-G3-A3CJ-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114279545	114279545	Frame_Shift_Del	T	-	p.D3257fs
LIHC	TCGA-G3-A3CJ-01	CAMK2D	ENST00000394526.2,ENST00000342666.5,ENST00000454265.2,ENST00000429180.1,ENST00000511664.1,ENST00000418639.2	chr4	114375260:114375671:114376881:114376977:114378490:114378719,	114376882	114376977	114376918	114376918	Frame_Shift_Del	T	-	p.N523fs
LIHC	TCGA-G3-A3CJ-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823619	114823619	Frame_Shift_Del	G	-	p.P537fs
LIHC	TCGA-G3-A3CJ-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823714	114823714	Frame_Shift_Del	C	-	p.V506fs
LIHC	TCGA-G3-A3CJ-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824686	114824686	Frame_Shift_Del	A	-	p.Y182fs
LIHC	TCGA-G3-A3CJ-01	METTL14	ENST00000506780.1,ENST00000388822.5	chr4	119625089:119625206:119626765:119626976:119631152:119631401,	119626766	119626976	119626780	119626780	Frame_Shift_Del	G	-	p.M290fs
LIHC	TCGA-G3-A3CJ-01	SEC24D	ENST00000419654.2,ENST00000511481.1,ENST00000379735.5,ENST00000514561.1,ENST00000511033.1,ENST00000280551.6,ENST00000505134.1,ENST00000429811.2	chr4	119665228:119665313:119666098:119666215:119673150:119673244,	119666099	119666215	119666139	119666139	Frame_Shift_Del	T	-	p.N596fs
LIHC	TCGA-G3-A3CJ-01	SEC24D	ENST00000419654.2,ENST00000511481.1,ENST00000379735.5,ENST00000514561.1,ENST00000511033.1,ENST00000280551.6,ENST00000505134.1,ENST00000429811.2	chr4	119666098:119666215:119673150:119673244:119673851:119674043,	119673151	119673244	119673200	119673200	Frame_Shift_Del	T	-	p.N554fs
LIHC	TCGA-G3-A3CJ-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000354960.3	chr4	120419695:120419893:120422324:120422408:120423735:120423810,	120422325	120422408	120422378	120422378	Frame_Shift_Del	T	-	p.I813fs
LIHC	TCGA-G3-A3CJ-01	PDE5A	ENST00000394439.1,ENST00000420633.1	chr4	120517680:120517767:120527863:120528452:120548304:120548788,120517680:120517767:120527863:120528452:120549149:120549202,	120527864	120528452	120528127	120528127	Frame_Shift_Del	A	-	p.S161fs
LIHC	TCGA-G3-A3CJ-01	EXOSC9	ENST00000503236.1,ENST00000512454.1,ENST00000243498.5	chr4	122735020:122735202:122737523:122737602:122737926:122737995,	122737524	122737602	122737569	122737569	Frame_Shift_Del	T	-	p.I385fs
LIHC	TCGA-G3-A3CJ-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123111154:123111234:123113383:123113534:123117789:123117946,	123113384	123113534	123113502	123113502	Frame_Shift_Del	T	-	p.D340fs
LIHC	TCGA-G3-A3CJ-01	KIAA1109	ENST00000495260.1,ENST00000264501.4,ENST00000455637.1,ENST00000424425.1,ENST00000388738.3	chr4	123128264:123128420:123128695:123128793:123130313:123130359,	123128696	123128793	123128733	123128733	Frame_Shift_Del	T	-	p.D564fs
LIHC	TCGA-G3-A3CJ-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000446180.1,ENST00000388738.3	chr4	123164152:123164223:123165008:123165182:123166174:123166295,	123165009	123165182	123165129	123165129	Frame_Shift_Del	A	-	p.V1621fs
LIHC	TCGA-G3-A3CJ-01	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123271011:123271229:123274058:123274310:123274968:123275172,	123274059	123274310	123274130	123274130	Frame_Shift_Del	T	-	p.F4641fs
LIHC	TCGA-G3-A3CJ-01	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123274058:123274310:123274968:123275172:123276950:123277145,	123274969	123275172	123275109	123275109	Frame_Shift_Del	C	-	p.P4749fs
LIHC	TCGA-G3-A3CJ-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123900386:123900541:123949340:123949550:123977541:123977595,	123949341	123949550	123949455	123949455	Frame_Shift_Del	A	-	p.K662fs
LIHC	TCGA-G3-A3CJ-01	HSPA4L	ENST00000508776.1,ENST00000505726.1,ENST00000296464.4,ENST00000439123.2,ENST00000508549.1	chr4	128722939:128723073:128724783:128725028:128725165:128725242,	128724784	128725028	128724810	128724810	Frame_Shift_Del	T	-	p.Y230fs
LIHC	TCGA-G3-A3CJ-01	MFSD8	ENST00000513559.1,ENST00000296468.3	chr4	128842885:128842926:128843014:128843118:128851837:128851972,	128843015	128843118	128843061	128843061	Frame_Shift_Del	A	-	p.F352fs
LIHC	TCGA-G3-A3CJ-01	MFSD8	ENST00000541133.1	chr4	128854139:128854248:128859937:128859993:128861007:128861152,128854139:128854248:128859937:128859993:128863199:128863313,	128859938	128859993	128859945	128859945	Frame_Shift_Del	A	-	p.F249fs
LIHC	TCGA-G3-A3CJ-01	LARP1B	ENST00000264584.5,ENST00000508819.1	chr4	128996088:128996148:128998942:128999117:129012155:129012299,	128998943	128999117	128998992	128998992	Frame_Shift_Del	A	-	p.E31fs
LIHC	TCGA-G3-A3CJ-01	LARP1B	ENST00000264584.5,ENST00000508819.1	chr4	129043271:129043343:129083348:129083472:129098026:129098062,129043271:129043343:129083348:129083472:129099585:129099797,	129083349	129083472	129083423	129083423	Frame_Shift_Del	T	-	p.P533fs
LIHC	TCGA-G3-A3CJ-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129809833:129809929:129812213:129812292:129857809:129857859,	129812214	129812292	129812224	129812224	Frame_Shift_Del	T	-	p.K633fs
LIHC	TCGA-G3-A3CJ-01	SCLT1	ENST00000511426.1,ENST00000503401.1	chr4	129960195:129960251:129964549:129964622:129965147:129965206,129960384:129961367:129964549:129964622:129965147:129965206,	129964550	129964622	129964617	129964617	Frame_Shift_Del	A	-	p.L56fs
LIHC	TCGA-G3-A3CJ-01	NAA15	ENST00000296543.5	chr4	140299909:140300008:140305985:140306132:140307286:140307384,	140305986	140306132	140306089	140306089	Frame_Shift_Del	T	-	p.T753fs
LIHC	TCGA-G3-A3CJ-01	NAA15	ENST00000398947.1	chr4	140299909:140300008:140305988:140306132:140307286:140307384,	140305989	140306132	140306089	140306089	Frame_Shift_Del	T	-	p.T753fs
LIHC	TCGA-G3-A3CJ-01	SCOC	ENST00000394201.4,ENST00000394205.3,ENST00000512749.1,ENST00000608372.1,ENST00000506322.1,ENST00000502535.1,ENST00000338517.4,ENST00000394203.3,ENST00000510586.1	chr4	141300274:141300346:141300722:141300806:141302115:141302280,	141300723	141300806	141300756	141300756	Frame_Shift_Del	A	-	p.E59fs
LIHC	TCGA-G3-A3CJ-01	ELMOD2	ENST00000323570.3,ENST00000512057.1	chr4	141458565:141458695:141461321:141461455:141463727:141463796,	141461322	141461455	141461390	141461390	Frame_Shift_Del	T	-	p.G156fs
LIHC	TCGA-G3-A3CJ-01	TBC1D9	ENST00000442267.2	chr4	141580741:141580859:141583046:141583261:141590070:141590221,	141583047	141583261	141583128	141583128	Frame_Shift_Del	A	-	p.F574fs
LIHC	TCGA-G3-A3CJ-01	TBC1D9	ENST00000442267.2	chr4	141590787:141590958:141591873:141592080:141598047:141598255,	141591874	141592080	141591904	141591904	Frame_Shift_Del	A	-	p.F412fs
LIHC	TCGA-G3-A3CJ-01	ZNF330	ENST00000503649.1,ENST00000512809.1,ENST00000262990.4,ENST00000507532.1,ENST00000512738.1	chr4	142145640:142145660:142145760:142145831:142147920:142147997,	142145761	142145831	142145807	142145807	Frame_Shift_Del	A	-	p.K63fs
LIHC	TCGA-G3-A3CJ-01	INPP4B	ENST00000308502.4,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000514525.1,ENST00000508116.1,ENST00000511838.1,ENST00000510812.1,ENST00000262992.4	chr4	143066992:143067149:143081510:143081714:143094784:143094962,	143081511	143081714	143081569	143081569	Frame_Shift_Del	G	-	p.P502fs
LIHC	TCGA-G3-A3CJ-01	INPP4B	ENST00000308502.4,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000514525.1,ENST00000508116.1,ENST00000511838.1,ENST00000510812.1,ENST00000262992.4	chr4	143066992:143067149:143081510:143081714:143094784:143094962,	143081511	143081714	143081582	143081582	Frame_Shift_Del	G	-	p.Q498fs
LIHC	TCGA-G3-A3CJ-01	INPP4B	ENST00000308502.4,ENST00000506297.1,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000514525.1,ENST00000508116.1,ENST00000511838.1,ENST00000510812.1,ENST00000262992.4	chr4	143159016:143159164:143181644:143181717:143191815:143191927,	143181645	143181717	143181653	143181653	Frame_Shift_Del	A	-	p.L227fs
LIHC	TCGA-G3-A3CJ-01	INPP4B	ENST00000308502.4,ENST00000513000.1,ENST00000509777.1,ENST00000512630.1,ENST00000508116.1,ENST00000510812.1,ENST00000262992.4	chr4	143226610:143226690:143235864:143235915:143324090:143324162,	143235865	143235915	143235871	143235871	Frame_Shift_Del	T	-	p.E139fs
LIHC	TCGA-G3-A3CJ-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144134987	144134987	Frame_Shift_Del	T	-	p.F620fs
LIHC	TCGA-G3-A3CJ-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135301	144135301	Frame_Shift_Del	T	-	p.Y724fs
LIHC	TCGA-G3-A3CJ-01	GAB1	ENST00000262994.4,ENST00000262995.4,ENST00000505913.1	chr4	144354643:144354869:144359151:144359753:144360954:144361040,	144359152	144359753	144359629	144359629	Frame_Shift_Del	G	-	p.V357fs
LIHC	TCGA-G3-A3CJ-01	OTUD4	ENST00000454497.2,ENST00000455611.2,ENST00000447906.2	chr4	146076720:146076838:146077087:146077148:146080654:146080787,	146077088	146077148	146077101	146077101	Frame_Shift_Del	A	-	p.L161fs
LIHC	TCGA-G3-A3CJ-01	OTUD4	ENST00000454497.2,ENST00000505976.1,ENST00000455611.2,ENST00000514973.1,ENST00000447906.2	chr4	146077087:146077148:146080654:146080787:146083791:146083873,	146080655	146080787	146080749	146080749	Frame_Shift_Del	T	-	p.T114fs
LIHC	TCGA-G3-A3CJ-01	SMAD1	ENST00000515385.1,ENST00000394092.2,ENST00000302085.4	chr4	146463733:146463850:146467854:146468076:146474935:146475069,	146467855	146468076	146467883	146467883	Frame_Shift_Del	A	-	p.P268fs
LIHC	TCGA-G3-A3CJ-01	ZNF827	ENST00000379448.4,ENST00000508784.1,ENST00000513320.1	chr4	146770502:146770713:146791396:146791630:146806829:146806900,	146791397	146791630	146791549	146791549	Frame_Shift_Del	A	-	p.L610fs
LIHC	TCGA-G3-A3CJ-01	EDNRA	ENST00000510697.1	chr4	148406985:148407253:148441002:148441130:148453657:148453811,148402083:148402528:148441002:148441130:148453657:148453811,148406985:148407253:148441002:148441130:148457028:148457181,	148441003	148441130	148441069	148441069	Frame_Shift_Del	T	-	p.F163fs
LIHC	TCGA-G3-A3CJ-01	EDNRA	ENST00000511804.1,ENST00000324300.5	chr4	148441002:148441130:148453657:148453856:148457028:148457181,	148453658	148453856	148453691	148453691	Frame_Shift_Del	G	-	p.Q194fs
LIHC	TCGA-G3-A3CJ-01	TMEM184C	ENST00000296582.3	chr4	148552543:148552656:148554053:148554153:148554915:148555074,	148554054	148554153	148554081	148554081	Frame_Shift_Del	A	-	p.V269fs
LIHC	TCGA-G3-A3CJ-01	NR3C2	ENST00000342437.4,ENST00000512865.1,ENST00000344721.4,ENST00000358102.3	chr4	149115921:149116013:149181129:149181269:149356255:149358012,	149181130	149181269	149181223	149181223	Frame_Shift_Del	T	-	p.I602fs
LIHC	TCGA-G3-A3CJ-01	NR3C2	ENST00000355292.3,ENST00000511528.1	chr4	149115921:149116013:149181117:149181269:149356255:149358012,	149181118	149181269	149181223	149181223	Frame_Shift_Del	T	-	p.I602fs
LIHC	TCGA-G3-A3CJ-01	DCLK2	ENST00000506325.1,ENST00000302176.8,ENST00000296550.7	chr4	151169456:151169537:151170719:151170836:151177171:151177399,	151170720	151170836	151170798	151170798	Frame_Shift_Del	A	-	p.K679fs
LIHC	TCGA-G3-A3CJ-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151769969:151770150:151770573:151770727:151771875:151772054,	151770574	151770727	151770611	151770611	Frame_Shift_Del	C	-	p.G1374fs
LIHC	TCGA-G3-A3CJ-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151792496:151792605:151793814:151793907:151814203:151814301,	151793815	151793907	151793829	151793829	Frame_Shift_Del	T	-	p.K748fs
LIHC	TCGA-G3-A3CJ-01	RPS3A	ENST00000512690.1	chr4	152024210:152024231:152025336:152025438:152025623:152025642,	152025337	152025438	152025347	152025347	Frame_Shift_Del	A	-	p.G157fs
LIHC	TCGA-G3-A3CJ-01	RPS3A	ENST00000507327.1,ENST00000510993.1,ENST00000514682.1,ENST00000274065.4,ENST00000509736.1,ENST00000515792.1,ENST00000506126.1	chr4	152024210:152024231:152025328:152025438:152025623:152025642,	152025329	152025438	152025347	152025347	Frame_Shift_Del	A	-	p.G157fs
LIHC	TCGA-G3-A3CJ-01	RPS3A	ENST00000512690.1	chr4	152024210:152024231:152025336:152025438:152025623:152025642,	152025337	152025438	152025410	152025410	Frame_Shift_Del	A	-	p.V178fs
LIHC	TCGA-G3-A3CJ-01	RPS3A	ENST00000507327.1,ENST00000510993.1,ENST00000514682.1,ENST00000274065.4,ENST00000509736.1,ENST00000515792.1,ENST00000506126.1	chr4	152024210:152024231:152025328:152025438:152025623:152025642,	152025329	152025438	152025410	152025410	Frame_Shift_Del	A	-	p.V178fs
LIHC	TCGA-G3-A3CJ-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152053482:152053535:152054185:152054388:152056225:152056284,	152054186	152054388	152054232	152054232	Frame_Shift_Del	A	-	p.F601fs
LIHC	TCGA-G3-A3CJ-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152053482:152053535:152054185:152054388:152056225:152056284,	152054186	152054388	152054240	152054240	Frame_Shift_Del	G	-	p.L599fs
LIHC	TCGA-G3-A3CJ-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000409252.2,ENST00000478503.2,ENST00000514152.1,ENST00000304527.4	chr4	152053482:152053535:152054185:152054388:152056225:152056284,	152054186	152054388	152054245	152054245	Frame_Shift_Del	A	-	p.F597fs
LIHC	TCGA-G3-A3CJ-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000478503.2,ENST00000514152.1	chr4	152060926:152060999:152065061:152065202:152069073:152069338,	152065062	152065202	152065177	152065177	Frame_Shift_Del	T	-	p.K423fs
LIHC	TCGA-G3-A3CJ-01	DCHS2	ENST00000339452.1	chr4	155249244:155249344:155250674:155250862:155253629:155254646,	155250675	155250862	155250697	155250697	Frame_Shift_Del	G	-	p.P844fs
LIHC	TCGA-G3-A3CJ-01	PLRG1	ENST00000499023.2,ENST00000393905.2,ENST00000504341.1	chr4	155466987:155467075:155467274:155467365:155468162:155468216,	155467275	155467365	155467363	155467363	Frame_Shift_Del	C	-	p.V106fs
LIHC	TCGA-G3-A3CJ-01	FGB	ENST00000509493.1,ENST00000302068.4	chr4	155489532:155489646:155490333:155490459:155490665:155490951,	155490334	155490459	155490375	155490375	Frame_Shift_Del	T	-	p.F292fs
LIHC	TCGA-G3-A3CJ-01	FGG	ENST00000404648.3,ENST00000465913.1,ENST00000407946.1,ENST00000405164.1,ENST00000336098.3,ENST00000492082.1	chr4	155528109:155528134:155529617:155529802:155530781:155530906,	155529618	155529802	155529702	155529702	Frame_Shift_Del	T	-	p.N256fs
LIHC	TCGA-G3-A3CJ-01	GRIA2	ENST00000512774.1	chr4	158141842:158141877:158142059:158142282:158142818:158142875,158141054:158141296:158142059:158142282:158142818:158142875,	158142060	158142282	158142241	158142241	Frame_Shift_Del	G	-	p.W16fs
LIHC	TCGA-G3-A3CJ-01	TMEM144	ENST00000511532.1,ENST00000514558.1,ENST00000504569.1,ENST00000508243.1,ENST00000296529.6	chr4	159136342:159136465:159138472:159138572:159140461:159140542,	159138473	159138572	159138499	159138499	Frame_Shift_Del	A	-	p.K87fs
LIHC	TCGA-G3-A3CJ-01	TMEM144	ENST00000511532.1,ENST00000503404.1,ENST00000296529.6	chr4	159162660:159162758:159165447:159165501:159174595:159176356,	159165448	159165501	159165490	159165490	Frame_Shift_Del	A	-	p.K315fs
LIHC	TCGA-G3-A3CJ-01	TMEM144	ENST00000511532.1,ENST00000503404.1,ENST00000296529.6	chr4	159162660:159162758:159165447:159165501:159174595:159176356,	159165448	159165501	159165494	159165494	Frame_Shift_Del	A	-	p.E316fs
LIHC	TCGA-G3-A3CJ-01	ETFDH	ENST00000307738.5,ENST00000511912.1	chr4	159620138:159620282:159624574:159624743:159627340:159627523,	159624575	159624743	159624641	159624641	Frame_Shift_Del	C	-	p.P395fs
LIHC	TCGA-G3-A3CJ-01	PPID	ENST00000307720.3	chr4	159636448:159636555:159636713:159636836:159638163:159638207,	159636714	159636836	159636787	159636787	Frame_Shift_Del	C	-	p.G191fs
LIHC	TCGA-G3-A3CJ-01	PPID	ENST00000512699.1	chr4	159636448:159636555:159636713:159636820:159638163:159638207,	159636714	159636820	159636787	159636787	Frame_Shift_Del	C	-	p.G191fs
LIHC	TCGA-G3-A3CJ-01	NAF1	ENST00000274054.2,ENST00000509232.1,ENST00000422287.2	chr4	164061374:164061535:164066933:164067016:164069492:164069586,	164066934	164067016	164066957	164066957	Frame_Shift_Del	T	-	p.S232fs
LIHC	TCGA-G3-A3CJ-01	TMEM192	ENST00000506087.1,ENST00000306480.6	chr4	165999571:166000948:166006737:166006840:166009619:166009754,	166006738	166006840	166006781	166006781	Frame_Shift_Del	T	-	p.I212fs
LIHC	TCGA-G3-A3CJ-01	CPE	ENST00000402744.4	chr4	166414322:166414422:166416710:166416829:166418663:166419472,	166416711	166416829	166416715	166416715	Frame_Shift_Del	G	-	p.K406fs
LIHC	TCGA-G3-A3CJ-01	DDX60	ENST00000393743.3	chr4	169169338:169169443:169172104:169172257:169173659:169173807,	169172105	169172257	169172216	169172216	Frame_Shift_Del	T	-	p.K1249fs
LIHC	TCGA-G3-A3CJ-01	DDX60	ENST00000393743.3	chr4	169206543:169206649:169208198:169208354:169209324:169209466,	169208199	169208354	169208336	169208336	Frame_Shift_Del	C	-	p.G401fs
LIHC	TCGA-G3-A3CJ-01	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169354160:169354266:169362487:169362643:169369788:169369930,	169362488	169362643	169362600	169362600	Frame_Shift_Del	T	-	p.E394fs
LIHC	TCGA-G3-A3CJ-01	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169362487:169362643:169369788:169369930:169374274:169374433,	169369789	169369930	169369886	169369886	Frame_Shift_Del	A	-	p.F347fs
LIHC	TCGA-G3-A3CJ-01	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169362487:169362643:169369788:169369930:169374274:169374433,	169369789	169369930	169369905	169369905	Frame_Shift_Del	A	-	p.L341fs
LIHC	TCGA-G3-A3CJ-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170038673:170038933:170041969:170042140:170043250:170043350,	170041970	170042140	170042032	170042032	Frame_Shift_Del	C	-	p.G485fs
LIHC	TCGA-G3-A3CJ-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170051196:170051307:170057468:170057771:170076630:170076726,	170057469	170057771	170057635	170057635	Frame_Shift_Del	T	-	p.K301fs
LIHC	TCGA-G3-A3CJ-01	NEK1	ENST00000510533.1,ENST00000512193.1	chr4	170429398:170429482:170458959:170459062:170477082:170477246,	170458960	170459062	170459020	170459020	Frame_Shift_Del	T	-	p.E536fs
LIHC	TCGA-G3-A3CJ-01	NEK1	ENST00000510533.1,ENST00000512193.1	chr4	170429398:170429482:170458959:170459062:170477082:170477246,	170458960	170459062	170459056	170459056	Frame_Shift_Del	T	-	p.K523fs
LIHC	TCGA-G3-A3CJ-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000509912.1,ENST00000439128.2	chr4	170477082:170477246:170482630:170482705:170482837:170482888,	170482631	170482705	170482681	170482681	Frame_Shift_Del	C	-	p.E406fs
LIHC	TCGA-G3-A3CJ-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170511876:170511960:170520250:170520348:170523158:170523255,	170520251	170520348	170520296	170520296	Frame_Shift_Del	A	-	p.F89fs
LIHC	TCGA-G3-A3CJ-01	GPM6A	ENST00000506894.1	chr4	176594904:176594987:176622725:176622918:176733341:176733400,176594904:176594987:176622725:176622918:176923459:176923483,	176622726	176622918	176622885	176622885	Frame_Shift_Del	C	-	p.G24fs
LIHC	TCGA-G3-A3CJ-01	DCTD	ENST00000507543.1,ENST00000438320.2,ENST00000510307.1,ENST00000514754.1,ENST00000503182.1,ENST00000357067.3,ENST00000510370.1,ENST00000512766.1	chr4	183815706:183815758:183836075:183836211:183836613:183836713,	183836076	183836211	183836099	183836099	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-G3-A3CJ-01	WWC2	ENST00000403733.3,ENST00000378925.3,ENST00000448232.2,ENST00000438543.1,ENST00000513834.1	chr4	184161335:184161415:184166568:184166698:184169866:184170013,	184166569	184166698	184166576	184166576	Frame_Shift_Del	A	-	p.K205fs
LIHC	TCGA-G3-A3CJ-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184930410	184930410	Frame_Shift_Del	C	-	p.T140fs
LIHC	TCGA-G3-A3CJ-01	IRF2	ENST00000393593.3,ENST00000510814.1,ENST00000507523.1,ENST00000505067.1	chr4	185329358:185329429:185339320:185339367:185339685:185339744,	185339321	185339367	185339345	185339345	Frame_Shift_Del	T	-	p.K129fs
LIHC	TCGA-G3-A3CJ-01	ACSL1	ENST00000281455.2,ENST00000504900.1,ENST00000507295.1	chr4	185709770:185709885:185724473:185724700:185747069:185747188,	185724474	185724700	185724581	185724581	Frame_Shift_Del	G	-	p.L30fs
LIHC	TCGA-G3-A3CJ-01	UFSP2	ENST00000511485.1,ENST00000514247.1,ENST00000510206.1,ENST00000510755.1,ENST00000264689.6	chr4	186321491:186321632:186324647:186324772:186326933:186327010,	186324648	186324772	186324655	186324655	Frame_Shift_Del	A	-	p.L439fs
LIHC	TCGA-G3-A3CJ-01	C4orf47	ENST00000508698.1,ENST00000512770.1	chr4	186350543:186350665:186357199:186357337:186361693:186361810,	186357200	186357337	186357246	186357246	Frame_Shift_Del	T	-	p.F124fs
LIHC	TCGA-G3-A3CJ-01	CCDC110	ENST00000507501.1,ENST00000510617.1,ENST00000307588.3,ENST00000510481.1,ENST00000506962.1	chr4	186381185:186381392:186382202:186382313:186383796:186383862,	186382203	186382313	186382237	186382237	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-G3-A3CJ-01	CCDC110	ENST00000507501.1,ENST00000510617.1,ENST00000307588.3,ENST00000510481.1,ENST00000506962.1	chr4	186381185:186381392:186382202:186382313:186383796:186383862,	186382203	186382313	186382258	186382258	Frame_Shift_Del	G	-	p.P98fs
LIHC	TCGA-G3-A3CJ-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186544329	186544329	Frame_Shift_Del	T	-	p.R748fs
LIHC	TCGA-G3-A3CJ-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186545008	186545008	Frame_Shift_Del	T	-	p.K521fs
LIHC	TCGA-G3-A3CJ-01	SORBS2	ENST00000393528.3	chr4	186551702:186551752:186556508:186556565:186567821:186567936,186551702:186551752:186556508:186556565:186560030:186560189,186551702:186551752:186556508:186556565:186559232:186559316,	186556509	186556565	186556555	186556555	Frame_Shift_Del	T	-	p.K301fs
LIHC	TCGA-G3-A3CJ-01	SORBS2	ENST00000437304.2	chr4	186583388:186583396:186598150:186598792:186599576:186599632,	186598151	186598792	186598269	186598273	Frame_Shift_Del	TCCTG	-	p.QD124fs
LIHC	TCGA-G3-A3CJ-01	SORBS2	ENST00000437304.2	chr4	186583388:186583396:186598150:186598792:186599576:186599632,	186598151	186598792	186598282	186598282	Frame_Shift_Del	G	-	p.L121fs
LIHC	TCGA-G3-A3CJ-01	SORBS2	ENST00000437304.2	chr4	186583388:186583396:186598150:186598792:186599576:186599632,	186598151	186598792	186598335	186598335	Frame_Shift_Del	G	-	p.P103fs
LIHC	TCGA-G3-A3CJ-01	F11	ENST00000452239.1,ENST00000403665.2,ENST00000264692.4	chr4	187197008:187197050:187197384:187197544:187201165:187201275,	187197385	187197544	187197501	187197501	Frame_Shift_Del	T	-	p.F187fs
LIHC	TCGA-G3-A3CJ-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187518070	187518070	Frame_Shift_Del	C	-	p.R4208fs
LIHC	TCGA-G3-A3CJ-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539062	187539062	Frame_Shift_Del	C	-	p.G2893fs
LIHC	TCGA-G3-A3CJ-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541397	187541397	Frame_Shift_Del	C	-	p.E2115fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	162986	162986	Frame_Shift_Del	G	-	p.L577fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163106	163106	Frame_Shift_Del	C	-	p.S617fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163182	163182	Frame_Shift_Del	G	-	p.G645fs
LIHC	TCGA-G3-A3CJ-01	AHRR	ENST00000316418.5,ENST00000512529.1,ENST00000505113.1,ENST00000506456.1	chr5	432577:432639:432920:433062:433967:434524,	432921	433062	433051	433051	Frame_Shift_Del	G	-	p.K389fs
LIHC	TCGA-G3-A3CJ-01	EXOC3	ENST00000315013.5,ENST00000511015.1,ENST00000503889.2,ENST00000512944.1	chr5	462074:462185:462271:462422:464404:464527,	462272	462422	462358	462358	Frame_Shift_Del	T	-	p.I530fs
LIHC	TCGA-G3-A3CJ-01	EXOC3	ENST00000515601.2	chr5	462074:462185:462271:462644:464404:464527,	462272	462644	462358	462358	Frame_Shift_Del	T	-	p.I530fs
LIHC	TCGA-G3-A3CJ-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	483376:483597:484634:484812:485267:485346,	484635	484812	484785	484785	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC11	ENST00000511193.1	chr5	837550:837595:840609:840712:843714:843808,	840610	840712	840703	840703	Frame_Shift_Del	G	-	p.L231fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC11	ENST00000283441.8,ENST00000424784.2,ENST00000507800.1	chr5	837550:837595:840609:840765:843714:843808,	840610	840765	840703	840703	Frame_Shift_Del	G	-	p.L231fs
LIHC	TCGA-G3-A3CJ-01	SLC12A7	ENST00000264930.5	chr5	1076808:1076927:1077947:1078122:1078815:1078873,	1077948	1078122	1078001	1078001	Frame_Shift_Del	C	-	p.A526fs
LIHC	TCGA-G3-A3CJ-01	SLC12A7	ENST00000264930.5	chr5	1076808:1076927:1077947:1078122:1078815:1078873,	1077948	1078122	1078065	1078065	Frame_Shift_Del	G	-	p.P504fs
LIHC	TCGA-G3-A3CJ-01	TERT	ENST00000460137.2,ENST00000310581.5,ENST00000334602.6,ENST00000296820.5,ENST00000484238.2	chr5	1253842:1253946:1254482:1254620:1255401:1255526,	1254483	1254620	1254571	1254571	Frame_Shift_Del	G	-	p.A1069fs
LIHC	TCGA-G3-A3CJ-01	TERT	ENST00000310581.5,ENST00000296820.5	chr5	1260588:1260715:1264518:1264707:1266578:1266650,	1264519	1264707	1264642	1264642	Frame_Shift_Del	A	-	p.F907fs
LIHC	TCGA-G3-A3CJ-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6604717:6604798:6605385:6605521:6606932:6607025,	6605386	6605521	6605492	6605492	Frame_Shift_Del	G	-	p.P544fs
LIHC	TCGA-G3-A3CJ-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6607312:6607497:6609938:6610035:6611067:6611198,	6609939	6610035	6609972	6609972	Frame_Shift_Del	T	-	p.K430fs
LIHC	TCGA-G3-A3CJ-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6607312:6607497:6609938:6610035:6611067:6611198,	6609939	6610035	6609993	6609993	Frame_Shift_Del	A	-	p.F423fs
LIHC	TCGA-G3-A3CJ-01	MTRR	ENST00000510525.1,ENST00000502550.1,ENST00000512217.1,ENST00000440940.2,ENST00000264668.2	chr5	7870882:7871036:7873485:7873639:7875370:7875423,	7873486	7873639	7873536	7873536	Frame_Shift_Del	G	-	p.T87fs
LIHC	TCGA-G3-A3CJ-01	MTRR	ENST00000513439.1,ENST00000508047.1	chr5	7870882:7871036:7873485:7873625:7875370:7875423,	7873486	7873625	7873536	7873536	Frame_Shift_Del	G	-	p.T87fs
LIHC	TCGA-G3-A3CJ-01	SEMA5A	ENST00000382496.5,ENST00000509486.1,ENST00000513968.1	chr5	9318483:9318529:9337824:9337924:9379934:9380135,	9337825	9337924	9337876	9337876	Frame_Shift_Del	A	-	p.F58fs
LIHC	TCGA-G3-A3CJ-01	SEMA5A	ENST00000382496.5	chr5	9337824:9337924:9379934:9380135:9437867:9437964,	9379935	9380135	9380019	9380019	Frame_Shift_Del	G	-	p.L14fs
LIHC	TCGA-G3-A3CJ-01	CCT5	ENST00000515676.1,ENST00000280326.4,ENST00000503026.1	chr5	10254256:10254317:10254785:10254950:10256066:10256265,	10254786	10254950	10254817	10254817	Frame_Shift_Del	A	-	p.G66fs
LIHC	TCGA-G3-A3CJ-01	CMBL	ENST00000296658.3	chr5	10280577:10280744:10282308:10282400:10286465:10286608,	10282309	10282400	10282342	10282342	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-G3-A3CJ-01	MARCH6	ENST00000511802.1,ENST00000449913.2,ENST00000510792.1,ENST00000503788.1,ENST00000274140.5,ENST00000512449.1	chr5	10410264:10410388:10411444:10411649:10414544:10414614,	10411445	10411649	10411480	10411480	Frame_Shift_Del	A	-	p.E576fs
LIHC	TCGA-G3-A3CJ-01	CTNND2	ENST00000458100.2,ENST00000504499.1	chr5	11385136:11385341:11397142:11397315:11411647:11411764,11364968:11365002:11397142:11397315:11411647:11411764,	11397143	11397315	11397217	11397217	Frame_Shift_Del	G	-	p.L180fs
LIHC	TCGA-G3-A3CJ-01	DNAH5	ENST00000265104.4	chr5	13727615:13727765:13729547:13729669:13735239:13735430,	13729548	13729669	13729623	13729623	Frame_Shift_Del	T	-	p.K3936fs
LIHC	TCGA-G3-A3CJ-01	DNAH5	ENST00000265104.4	chr5	13830134:13830322:13830705:13830884:13839464:13839637,	13830706	13830884	13830834	13830834	Frame_Shift_Del	G	-	p.P1978fs
LIHC	TCGA-G3-A3CJ-01	DNAH5	ENST00000265104.4	chr5	13886072:13886238:13891084:13891230:13894758:13894930,	13891085	13891230	13891129	13891129	Frame_Shift_Del	G	-	p.Q845fs
LIHC	TCGA-G3-A3CJ-01	ANKH	ENST00000284268.6,ENST00000503939.1	chr5	14749280:14749415:14751177:14751348:14755969:14755997,	14751178	14751348	14751203	14751203	Frame_Shift_Del	G	-	p.P221fs
LIHC	TCGA-G3-A3CJ-01	ANKH	ENST00000284268.6	chr5	14751177:14751348:14755969:14756053:14758588:14758707,	14755970	14756053	14756024	14756024	Frame_Shift_Del	T	-	p.K154fs
LIHC	TCGA-G3-A3CJ-01	FBXL7	ENST00000504595.1,ENST00000329673.7,ENST00000510662.1	chr5	15616091:15616181:15927998:15928610:15936558:15937295,	15927999	15928610	15928413	15928413	Frame_Shift_Del	C	-	p.T181fs
LIHC	TCGA-G3-A3CJ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32073937:32074749:32077567:32077712:32087236:32091281,	32077568	32077712	32077638	32077638	Frame_Shift_Del	C	-	p.S1203fs
LIHC	TCGA-G3-A3CJ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32088299	32088299	Frame_Shift_Del	C	-	p.S1582fs
LIHC	TCGA-G3-A3CJ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089076	32089076	Frame_Shift_Del	A	-	p.Q1841fs
LIHC	TCGA-G3-A3CJ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089412	32089412	Frame_Shift_Del	C	-	p.S1953fs
LIHC	TCGA-G3-A3CJ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32090268	32090268	Frame_Shift_Del	C	-	p.H2238fs
LIHC	TCGA-G3-A3CJ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32091123	32091123	Frame_Shift_Del	C	-	p.G2523fs
LIHC	TCGA-G3-A3CJ-01	TARS	ENST00000509410.1,ENST00000455217.2,ENST00000502553.1,ENST00000541634.1,ENST00000507716.1,ENST00000414361.2,ENST00000265112.3,ENST00000508361.1,ENST00000509731.1	chr5	33462010:33462111:33462203:33462308:33463857:33463930,	33462204	33462308	33462298	33462298	Frame_Shift_Del	G	-	p.G610fs
LIHC	TCGA-G3-A3CJ-01	ADAMTS12	ENST00000504830.1,ENST00000504582.1	chr5	33624335:33624456:33630884:33631018:33637681:33637851,	33630885	33631018	33630974	33630974	Frame_Shift_Del	A	-	p.S645fs
LIHC	TCGA-G3-A3CJ-01	SLC45A2	ENST00000296589.4,ENST00000382102.3	chr5	33954465:33954609:33963795:33964121:33984303:33984342,33954465:33954609:33963795:33964121:33982340:33982517,	33963796	33964121	33963815	33963815	Frame_Shift_Del	T	-	p.N290fs
LIHC	TCGA-G3-A3CJ-01	RAI14	ENST00000265109.3,ENST00000506376.1,ENST00000515799.1,ENST00000512629.1,ENST00000503673.1,ENST00000508777.1,ENST00000428746.2,ENST00000397449.1	chr5	34814687:34814774:34818901:34818956:34821836:34821938,	34818902	34818956	34818924	34818924	Frame_Shift_Del	A	-	p.E321fs
LIHC	TCGA-G3-A3CJ-01	TTC23L	ENST00000502674.1,ENST00000505624.1,ENST00000514080.1,ENST00000506758.1	chr5	34845591:34845778:34850289:34850413:34863002:34863115,	34850290	34850413	34850362	34850362	Frame_Shift_Del	A	-	p.K110fs
LIHC	TCGA-G3-A3CJ-01	RAD1	ENST00000325577.4	chr5	34909362:34909461:34911658:34911917:34913574:34913683,34909362:34909461:34911658:34911917:34914799:34914906,	34911659	34911917	34911723	34911723	Frame_Shift_Del	A	-	p.S168fs
LIHC	TCGA-G3-A3CJ-01	RAD1	ENST00000513914.1	chr5	34911722:34911917:34913574:34913683:34914799:34914906,34911722:34911917:34913574:34913683:34914031:34914131,	34913575	34913683	34913636	34913636	Frame_Shift_Del	A	-	p.F82fs
LIHC	TCGA-G3-A3CJ-01	DNAJC21	ENST00000342382.4,ENST00000303525.7,ENST00000382021.2	chr5	34935814:34935938:34936248:34936371:34937430:34937735,	34936249	34936371	34936319	34936319	Frame_Shift_Del	A	-	p.E130fs
LIHC	TCGA-G3-A3CJ-01	DNAJC21	ENST00000514237.1,ENST00000342382.4,ENST00000303525.7,ENST00000382021.2	chr5	34938962:34939114:34941200:34941288:34944971:34945130,	34941201	34941288	34941253	34941253	Frame_Shift_Del	C	-	p.C316fs
LIHC	TCGA-G3-A3CJ-01	DNAJC21	ENST00000514237.1,ENST00000303525.7	chr5	34944971:34945130:34945826:34945908:34950274:34950447,	34945827	34945908	34945855	34945855	Frame_Shift_Del	T	-	p.F391fs
LIHC	TCGA-G3-A3CJ-01	DNAJC21	ENST00000382021.2	chr5	34945865:34945908:34949647:34949782:34950274:34950447,	34949648	34949782	34949759	34949759	Frame_Shift_Del	A	-	p.K433fs
LIHC	TCGA-G3-A3CJ-01	AGXT2	ENST00000231420.6,ENST00000510428.1	chr5	35037046:35037170:35039428:35039613:35047909:35047995,35037046:35037170:35039428:35039613:35040679:35040765,	35039429	35039613	35039486	35039486	Frame_Shift_Del	C	-	p.S102fs
LIHC	TCGA-G3-A3CJ-01	PRLR	ENST00000509140.1,ENST00000513753.1,ENST00000382002.5,ENST00000231423.3,ENST00000511486.1,ENST00000508107.1,ENST00000542609.1,ENST00000310101.5,ENST00000342362.5	chr5	35068331:35068387:35068880:35068980:35070225:35070367,	35068881	35068980	35068933	35068933	Frame_Shift_Del	A	-	p.S245fs
LIHC	TCGA-G3-A3CJ-01	SPEF2	ENST00000509059.1,ENST00000282469.6,ENST00000440995.2,ENST00000356031.3	chr5	35641686:35641785:35644456:35644627:35646768:35646909,	35644457	35644627	35644489	35644489	Frame_Shift_Del	T	-	p.D149fs
LIHC	TCGA-G3-A3CJ-01	SPEF2	ENST00000440995.2,ENST00000356031.3	chr5	35759669:35759821:35763623:35763804:35771710:35771858,	35763624	35763804	35763678	35763678	Frame_Shift_Del	A	-	p.P1220fs
LIHC	TCGA-G3-A3CJ-01	UGT3A2	ENST00000504954.1	chr5	36051971:36052086:36064350:36064452:36066797:36066984,36051971:36052086:36064350:36064452:36071183:36071460,	36064351	36064452	36064429	36064429	Frame_Shift_Del	C	-	p.D40fs
LIHC	TCGA-G3-A3CJ-01	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36255571:36255692:36257042:36257173:36257555:36257658,	36257043	36257173	36257069	36257069	Frame_Shift_Del	C	-	p.E294fs
LIHC	TCGA-G3-A3CJ-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984882	36984882	Frame_Shift_Del	G	-	p.G534fs
LIHC	TCGA-G3-A3CJ-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985300	36985300	Frame_Shift_Del	A	-	p.Q673fs
LIHC	TCGA-G3-A3CJ-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985331	36985331	Frame_Shift_Del	A	-	p.P683fs
LIHC	TCGA-G3-A3CJ-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	36995851:36995906:37000474:37000672:37000918:37000990,	37000475	37000672	37000560	37000560	Frame_Shift_Del	A	-	p.R1130fs
LIHC	TCGA-G3-A3CJ-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	37027460:37027514:37036480:37036589:37038703:37038840,	37036481	37036589	37036523	37036523	Frame_Shift_Del	A	-	p.K1969fs
LIHC	TCGA-G3-A3CJ-01	LIFR	ENST00000506003.1,ENST00000263409.4,ENST00000453190.2	chr5	38489179:38489347:38490291:38490393:38493707:38493887,	38490292	38490393	38490360	38490360	Frame_Shift_Del	A	-	p.F700fs
LIHC	TCGA-G3-A3CJ-01	LIFR	ENST00000503088.1,ENST00000263409.4,ENST00000453190.2	chr5	38499614:38499685:38502738:38502901:38504077:38504223,	38502739	38502901	38502818	38502818	Frame_Shift_Del	A	-	p.F507fs
LIHC	TCGA-G3-A3CJ-01	TTC33	ENST00000511730.2	chr5	40730363:40730445:40746899:40747121:40755925:40756047,	40746900	40747121	40746941	40746941	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-G3-A3CJ-01	C6	ENST00000337836.5,ENST00000263413.3	chr5	41186171:41186310:41195893:41196035:41199869:41200014,	41195894	41196035	41195959	41195959	Frame_Shift_Del	C	-	p.G174fs
LIHC	TCGA-G3-A3CJ-01	C5orf51	ENST00000509976.1,ENST00000381647.2	chr5	41907837:41907944:41909847:41909994:41911149:41911281,	41909848	41909994	41909894	41909894	Frame_Shift_Del	A	-	p.E85fs
LIHC	TCGA-G3-A3CJ-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927229	41927229	Frame_Shift_Del	T	-	p.F102fs
LIHC	TCGA-G3-A3CJ-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927331	41927331	Frame_Shift_Del	T	-	p.F137fs
LIHC	TCGA-G3-A3CJ-01	FBXO4	ENST00000281623.3	chr5	41934238:41934410:41939542:41939718:41941293:41941670,	41939543	41939718	41939652	41939652	Frame_Shift_Del	A	-	p.V336fs
LIHC	TCGA-G3-A3CJ-01	GHR	ENST00000230882.4	chr5	42565965:42566046:42629139:42629205:42688991:42689121,	42629140	42629205	42629187	42629187	Frame_Shift_Del	A	-	p.N40fs
LIHC	TCGA-G3-A3CJ-01	ZNF131	ENST00000509156.1,ENST00000399534.1	chr5	43123310:43123412:43161350:43162033:43173419:43173550,43139266:43139411:43161350:43162033:43173419:43173550,	43161351	43162033	43161996	43161996	Frame_Shift_Del	T	-	p.H305fs
LIHC	TCGA-G3-A3CJ-01	HMGCS1	ENST00000325110.6,ENST00000433297.2	chr5	43294792:43294963:43295853:43296019:43297103:43297268,	43295854	43296019	43295884	43295884	Frame_Shift_Del	T	-	p.N292fs
LIHC	TCGA-G3-A3CJ-01	HMGCS1	ENST00000325110.6,ENST00000433297.2	chr5	43294792:43294963:43295853:43296019:43297103:43297268,	43295854	43296019	43295940	43295940	Frame_Shift_Del	T	-	p.K273fs
LIHC	TCGA-G3-A3CJ-01	C5orf34	ENST00000514462.1	chr5	43505849:43506496:43508678:43508768:43514907:43515126,	43508679	43508768	43508713	43508713	Frame_Shift_Del	A	-	p.L84fs
LIHC	TCGA-G3-A3CJ-01	PAIP1	ENST00000436644.2,ENST00000338972.4,ENST00000306846.3,ENST00000514514.1	chr5	43535635:43535742:43536920:43537046:43539025:43539137,	43536921	43537046	43536968	43536968	Frame_Shift_Del	A	-	p.S309fs
LIHC	TCGA-G3-A3CJ-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43628301:43628489:43644293:43644427:43644712:43644904,	43644294	43644427	43644296	43644296	Frame_Shift_Del	A	-	p.K324fs
LIHC	TCGA-G3-A3CJ-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43653119:43653315:43655941:43656175:43656754:43656915,	43655942	43656175	43655997	43655997	Frame_Shift_Del	T	-	p.A705fs
LIHC	TCGA-G3-A3CJ-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000505180.1,ENST00000507812.1,ENST00000503888.1,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503193.1,ENST00000515166.1,ENST00000510303.2	chr5	50055476:50055566:50056125:50056196:50057654:50057721,	50056126	50056196	50056180	50056180	Frame_Shift_Del	A	-	p.Q110fs
LIHC	TCGA-G3-A3CJ-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50122588:50122637:50123777:50123890:50124145:50124218,	50123778	50123890	50123846	50123846	Frame_Shift_Del	T	-	p.N682fs
LIHC	TCGA-G3-A3CJ-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000509814.1	chr5	52285269:52285362:52322577:52322698:52337941:52338051,	52322578	52322698	52322624	52322624	Frame_Shift_Del	A	-	p.A37fs
LIHC	TCGA-G3-A3CJ-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000509814.1,ENST00000513685.1,ENST00000296585.5	chr5	52351367:52351518:52351813:52351979:52353854:52353931,	52351814	52351979	52351839	52351839	Frame_Shift_Del	C	-	p.A319fs
LIHC	TCGA-G3-A3CJ-01	NDUFS4	ENST00000296684.5,ENST00000506974.1,ENST00000502423.1,ENST00000507026.1	chr5	52942062:52942235:52954380:52954454:52978947:52978968,	52954381	52954454	52954446	52954446	Frame_Shift_Del	A	-	p.E139fs
LIHC	TCGA-G3-A3CJ-01	DHX29	ENST00000251636.5,ENST00000504778.1	chr5	54581120:54581244:54581523:54581689:54585097:54585256,	54581524	54581689	54581683	54581683	Frame_Shift_Del	T	-	p.K359fs
LIHC	TCGA-G3-A3CJ-01	SLC38A9	ENST00000396865.2,ENST00000511233.1,ENST00000515159.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54931371:54931485:54941616:54941723:54945034:54945142,	54941617	54941723	54941671	54941671	Frame_Shift_Del	A	-	p.F371fs
LIHC	TCGA-G3-A3CJ-01	SLC38A9	ENST00000396865.2,ENST00000515159.1,ENST00000524030.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54941616:54941723:54948356:54948551:54952542:54952602,54945037:54945142:54948356:54948551:54952542:54952602,	54948357	54948551	54948429	54948429	Frame_Shift_Del	A	-	p.Y294fs
LIHC	TCGA-G3-A3CJ-01	SLC38A9	ENST00000396865.2,ENST00000515159.1,ENST00000524030.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54941616:54941723:54948356:54948551:54952542:54952602,54945037:54945142:54948356:54948551:54952542:54952602,	54948357	54948551	54948453	54948453	Frame_Shift_Del	C	-	p.D286fs
LIHC	TCGA-G3-A3CJ-01	IL6ST	ENST00000502326.3,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000583149.1,ENST00000336909.5,ENST00000381298.2	chr5	55238497:55238579:55243320:55243417:55247291:55247334,	55243321	55243417	55243370	55243370	Frame_Shift_Del	G	-	p.L631fs
LIHC	TCGA-G3-A3CJ-01	MAP3K1	ENST00000399503.3	chr5	56161166:56161283:56161655:56161804:56167736:56167858,	56161656	56161804	56161664	56161664	Frame_Shift_Del	T	-	p.S387fs
LIHC	TCGA-G3-A3CJ-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56171018	56171018	Frame_Shift_Del	G	-	p.G617fs
LIHC	TCGA-G3-A3CJ-01	DEPDC1B	ENST00000545085.1,ENST00000453022.2,ENST00000512078.1,ENST00000265036.5	chr5	59899217:59899394:59901516:59901683:59934576:59934717,	59901517	59901683	59901546	59901546	Frame_Shift_Del	G	-	p.L346fs
LIHC	TCGA-G3-A3CJ-01	ELOVL7	ENST00000504455.1	chr5	60063649:60063730:60067775:60067920:60083160:60083258,	60067776	60067920	60067844	60067844	Frame_Shift_Del	A	-	p.F34fs
LIHC	TCGA-G3-A3CJ-01	ELOVL7	ENST00000511799.1,ENST00000438340.1,ENST00000507047.1,ENST00000508821.1,ENST00000425382.1	chr5	60063649:60063730:60067729:60067920:60083160:60083258,	60067730	60067920	60067844	60067844	Frame_Shift_Del	A	-	p.F34fs
LIHC	TCGA-G3-A3CJ-01	ERCC8	ENST00000543101.1,ENST00000426742.2,ENST00000381118.3,ENST00000265038.5	chr5	60183266:60183347:60186715:60186913:60194102:60194227,	60186716	60186913	60186830	60186830	Frame_Shift_Del	A	-	p.F251fs
LIHC	TCGA-G3-A3CJ-01	ERCC8	ENST00000543101.1	chr5	60198268:60198335:60199474:60199543:60214091:60214215,	60199475	60199543	60199507	60199507	Frame_Shift_Del	A	-	p.L115fs
LIHC	TCGA-G3-A3CJ-01	KIF2A	ENST00000381103.2,ENST00000407818.3,ENST00000401507.3,ENST00000514082.1,ENST00000506857.1	chr5	61653517:61653572:61653963:61654126:61657068:61657106,	61653964	61654126	61654079	61654079	Frame_Shift_Del	T	-	p.R255fs
LIHC	TCGA-G3-A3CJ-01	DIMT1	ENST00000506390.1	chr5	61686702:61686809:61687997:61688061:61688752:61688817,61687543:61687833:61687997:61688061:61688752:61688817,	61687998	61688061	61688029	61688029	Frame_Shift_Del	T	-	p.N254fs
LIHC	TCGA-G3-A3CJ-01	DIMT1	ENST00000199320.4,ENST00000509182.1,ENST00000506390.1	chr5	61690310:61690434:61694337:61694387:61694472:61694566,	61694338	61694387	61694341	61694341	Frame_Shift_Del	A	-	p.F148fs
LIHC	TCGA-G3-A3CJ-01	DIMT1	ENST00000514911.1	chr5	61690310:61690434:61694255:61694387:61694472:61694566,	61694256	61694387	61694341	61694341	Frame_Shift_Del	A	-	p.F148fs
LIHC	TCGA-G3-A3CJ-01	ADAMTS6	ENST00000536360.1,ENST00000381052.4	chr5	64766604:64766969:64769403:64769779:64777169:64777244,	64769404	64769779	64769494	64769494	Frame_Shift_Del	T	-	p.I3fs
LIHC	TCGA-G3-A3CJ-01	CENPK	ENST00000515497.1,ENST00000502997.1,ENST00000242872.3,ENST00000396679.1,ENST00000514814.1,ENST00000508421.1,ENST00000510693.1,ENST00000510768.1	chr5	64838628:64838675:64847390:64847463:64848319:64848376,	64847391	64847463	64847437	64847437	Frame_Shift_Del	T	-	p.K65fs
LIHC	TCGA-G3-A3CJ-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000511334.1,ENST00000538977.1,ENST00000510930.1,ENST00000261308.5	chr5	64872778:64872896:64875250:64875440:64878864:64878939,	64875251	64875440	64875262	64875262	Frame_Shift_Del	T	-	p.I391fs
LIHC	TCGA-G3-A3CJ-01	TRAPPC13	ENST00000438419.2,ENST00000399438.3,ENST00000505553.1,ENST00000504243.1,ENST00000512009.1,ENST00000231526.4,ENST00000508304.1,ENST00000545191.1,ENST00000504751.1	chr5	64942881:64943009:64946636:64946709:64948327:64948372,	64946637	64946709	64946675	64946675	Frame_Shift_Del	A	-	p.E156fs
LIHC	TCGA-G3-A3CJ-01	SGTB	ENST00000506816.1,ENST00000381007.4	chr5	65000105:65000205:65004315:65004385:65008787:65008891,	65004316	65004385	65004342	65004342	Frame_Shift_Del	C	-	p.G83fs
LIHC	TCGA-G3-A3CJ-01	MAST4	ENST00000403625.2,ENST00000406374.1,ENST00000432817.1,ENST00000406039.1,ENST00000452953.1,ENST00000404260.3	chr5	66055557:66055690:66084497:66084622:66195778:66195810,	66084498	66084622	66084514	66084514	Frame_Shift_Del	A	-	p.P178fs
LIHC	TCGA-G3-A3CJ-01	MAST4	ENST00000405643.1,ENST00000403625.2,ENST00000261569.7,ENST00000403666.1,ENST00000404260.3	chr5	66441063:66441207:66445216:66445417:66448464:66448694,	66445217	66445417	66445224	66445224	Frame_Shift_Del	T	-	p.S1037fs
LIHC	TCGA-G3-A3CJ-01	SLC30A5	ENST00000396591.3,ENST00000507354.1	chr5	68412350:68412429:68413065:68413223:68414325:68414455,	68413066	68413223	68413142	68413142	Frame_Shift_Del	T	-	p.L453fs
LIHC	TCGA-G3-A3CJ-01	CENPH	ENST00000283006.2,ENST00000515001.1,ENST00000502689.1	chr5	68498745:68498797:68504022:68504186:68505533:68505628,	68504023	68504186	68504068	68504068	Frame_Shift_Del	A	-	p.E178fs
LIHC	TCGA-G3-A3CJ-01	CDK7	ENST00000506789.1	chr5	68546571:68546658:68548244:68548278:68550428:68550494,68531220:68531280:68548244:68548278:68550428:68550494,68531220:68531280:68548244:68548278:68553869:68553980,	68548245	68548278	68548272	68548272	Frame_Shift_Del	A	-	p.K52fs
LIHC	TCGA-G3-A3CJ-01	CCDC125	ENST00000511257.1,ENST00000383374.2,ENST00000396499.1,ENST00000396496.2	chr5	68595838:68595954:68599673:68599756:68602643:68602729,	68599674	68599756	68599751	68599751	Frame_Shift_Del	T	-	p.N208fs
LIHC	TCGA-G3-A3CJ-01	RAD17	ENST00000509734.1	chr5	68666910:68666998:68667280:68667384:68667860:68667881,68666910:68666998:68667280:68667384:68669656:68669709,	68667281	68667384	68667348	68667348	Frame_Shift_Del	A	-	p.S2fs
LIHC	TCGA-G3-A3CJ-01	RAD17	ENST00000509734.1	chr5	68666910:68666998:68667280:68667384:68667860:68667881,68666910:68666998:68667280:68667384:68669656:68669709,	68667281	68667384	68667375	68667375	Frame_Shift_Del	T	-	p.S12fs
LIHC	TCGA-G3-A3CJ-01	RAD17	ENST00000354868.5,ENST00000506564.1,ENST00000305138.4,ENST00000361732.2,ENST00000354312.3,ENST00000345306.6	chr5	68667983:68668044:68669656:68669914:68670454:68670538,	68669657	68669914	68669857	68669857	Frame_Shift_Del	A	-	p.S81fs
LIHC	TCGA-G3-A3CJ-01	RAD17	ENST00000354868.5,ENST00000380774.3,ENST00000282891.6,ENST00000509734.1,ENST00000512785.1,ENST00000358030.2,ENST00000305138.4,ENST00000361732.2,ENST00000354312.3,ENST00000521422.1,ENST00000345306.6	chr5	68670454:68670538:68677727:68677884:68680623:68680760,	68677728	68677884	68677862	68677862	Frame_Shift_Del	T	-	p.D173fs
LIHC	TCGA-G3-A3CJ-01	OCLN	ENST00000396442.2,ENST00000355237.2	chr5	68800027:68800121:68809774:68809936:68830520:68830666,68804967:68805646:68809774:68809936:68830520:68830666,	68809775	68809936	68809916	68809916	Frame_Shift_Del	C	-	p.P292fs
LIHC	TCGA-G3-A3CJ-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70766221:70766316:70779668:70779723:70782310:70782454,	70779669	70779723	70779672	70779672	Frame_Shift_Del	A	-	p.K340fs
LIHC	TCGA-G3-A3CJ-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2,ENST00000508157.3	chr5	70797388:70797480:70798425:70798618:70800447:70800578,	70798426	70798618	70798491	70798491	Frame_Shift_Del	G	-	p.R705fs
LIHC	TCGA-G3-A3CJ-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70806777	70806777	Frame_Shift_Del	A	-	p.G1286fs
LIHC	TCGA-G3-A3CJ-01	BDP1	ENST00000525844.1,ENST00000358731.4	chr5	70844508:70844572:70845246:70845433:70848942:70849147,	70845247	70845433	70845368	70845368	Frame_Shift_Del	A	-	p.P2310fs
LIHC	TCGA-G3-A3CJ-01	MCCC2	ENST00000512218.2,ENST00000509358.2,ENST00000505787.3,ENST00000323375.8,ENST00000340941.6	chr5	70895485:70895587:70898332:70898460:70900182:70900295,	70898333	70898460	70898434	70898434	Frame_Shift_Del	A	-	p.Q162fs
LIHC	TCGA-G3-A3CJ-01	MCCC2	ENST00000512218.2,ENST00000509358.2,ENST00000505787.3,ENST00000323375.8,ENST00000340941.6	chr5	70895485:70895587:70898332:70898460:70900182:70900295,	70898333	70898460	70898444	70898444	Frame_Shift_Del	C	-	p.L165fs
LIHC	TCGA-G3-A3CJ-01	MCCC2	ENST00000510895.2,ENST00000509358.2,ENST00000505787.3,ENST00000340941.6	chr5	70900206:70900295:70922466:70922580:70927947:70928012,	70922467	70922580	70922572	70922572	Frame_Shift_Del	C	-	p.P245fs
LIHC	TCGA-G3-A3CJ-01	PTCD2	ENST00000503315.1,ENST00000308077.5,ENST00000510676.2,ENST00000543322.1,ENST00000515198.1,ENST00000536805.1	chr5	71616225:71616336:71617998:71618091:71622438:71622568,	71617999	71618091	71618001	71618001	Frame_Shift_Del	A	-	p.K44fs
LIHC	TCGA-G3-A3CJ-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72183904:72184130:72185612:72185784:72187636:72187723,	72185613	72185784	72185661	72185661	Frame_Shift_Del	C	-	p.Y526fs
LIHC	TCGA-G3-A3CJ-01	FCHO2	ENST00000512348.1	chr5	72302271:72302376:72313038:72313135:72330483:72330528,	72313039	72313135	72313110	72313110	Frame_Shift_Del	A	-	p.S257fs
LIHC	TCGA-G3-A3CJ-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000430046.2	chr5	72373164:72373320:72374006:72374139:72377609:72377809,	72374007	72374139	72374098	72374098	Frame_Shift_Del	C	-	p.P647fs
LIHC	TCGA-G3-A3CJ-01	FCHO2	ENST00000341845.6,ENST00000512348.1,ENST00000430046.2	chr5	72374006:72374139:72377609:72377809:72378587:72378652,	72377610	72377809	72377661	72377661	Frame_Shift_Del	A	-	p.K678fs
LIHC	TCGA-G3-A3CJ-01	BTF3	ENST00000335895.8,ENST00000507081.2,ENST00000514360.1,ENST00000514505.2,ENST00000380591.3	chr5	72798740:72798942:72800171:72800228:72801016:72801018,	72800172	72800228	72800182	72800182	Frame_Shift_Del	A	-	p.G176fs
LIHC	TCGA-G3-A3CJ-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931192	73931192	Frame_Shift_Del	G	-	p.P373fs
LIHC	TCGA-G3-A3CJ-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931192	73931192	Frame_Shift_Del	G	-	p.P373fs
LIHC	TCGA-G3-A3CJ-01	HEXB	ENST00000504459.1,ENST00000261416.7,ENST00000511181.1	chr5	74009362:74009460:74011334:74011515:74012411:74012498,	74011335	74011515	74011387	74011387	Frame_Shift_Del	T	-	p.S93fs
LIHC	TCGA-G3-A3CJ-01	HEXB	ENST00000504459.1,ENST00000261416.7,ENST00000511181.1	chr5	74009362:74009460:74011334:74011515:74012411:74012498,	74011335	74011515	74011439	74011439	Frame_Shift_Del	T	-	p.F112fs
LIHC	TCGA-G3-A3CJ-01	GFM2	ENST00000506778.1,ENST00000427854.2,ENST00000296805.3,ENST00000509430.1,ENST00000345239.2	chr5	74047203:74047318:74054673:74054771:74055193:74055251,	74054674	74054771	74054728	74054728	Frame_Shift_Del	T	-	p.T87fs
LIHC	TCGA-G3-A3CJ-01	COL4A3BP	ENST00000405807.4,ENST00000261415.7,ENST00000380494.5	chr5	74664310:74664483:74675161:74675298:74676896:74677026,74669982:74670016:74675161:74675298:74676896:74677026,	74675162	74675298	74675197	74675197	Frame_Shift_Del	T	-	p.T745fs
LIHC	TCGA-G3-A3CJ-01	COL4A3BP	ENST00000405807.4,ENST00000261415.7,ENST00000380494.5	chr5	74664310:74664483:74675161:74675298:74676896:74677026,74669982:74670016:74675161:74675298:74676896:74677026,	74675162	74675298	74675273	74675273	Frame_Shift_Del	G	-	p.A719fs
LIHC	TCGA-G3-A3CJ-01	COL4A3BP	ENST00000357457.4,ENST00000405807.4,ENST00000508692.1,ENST00000261415.7,ENST00000380494.5	chr5	74676969:74677026:74677773:74677902:74680466:74680537,	74677774	74677902	74677797	74677797	Frame_Shift_Del	A	-	p.S660fs
LIHC	TCGA-G3-A3CJ-01	COL4A3BP	ENST00000357457.4,ENST00000405807.4,ENST00000508692.1,ENST00000261415.7,ENST00000380494.5	chr5	74676969:74677026:74677773:74677902:74680466:74680537,	74677774	74677902	74677802	74677802	Frame_Shift_Del	T	-	p.N658fs
LIHC	TCGA-G3-A3CJ-01	COL4A3BP	ENST00000405807.4,ENST00000261415.7,ENST00000380494.5	chr5	74696029:74696122:74698796:74698883:74706835:74706928,	74698797	74698883	74698808	74698808	Frame_Shift_Del	T	-	p.I464fs
LIHC	TCGA-G3-A3CJ-01	COL4A3BP	ENST00000405807.4,ENST00000261415.7,ENST00000380494.5	chr5	74698796:74698883:74706835:74706928:74712700:74712858,	74706836	74706928	74706888	74706888	Frame_Shift_Del	T	-	p.N421fs
LIHC	TCGA-G3-A3CJ-01	POLK	ENST00000514141.1	chr5	74886177:74886265:74889702:74889874:74892046:74893003,74882850:74882883:74889702:74889874:74892046:74893003,	74889703	74889874	74889747	74889747	Frame_Shift_Del	A	-	p.V467fs
LIHC	TCGA-G3-A3CJ-01	POC5	ENST00000428202.2,ENST00000514838.2,ENST00000446329.2	chr5	74970255:74970403:74973598:74973775:74981031:74981193,	74973599	74973775	74973684	74973684	Frame_Shift_Del	T	-	p.N500fs
LIHC	TCGA-G3-A3CJ-01	SV2C	ENST00000502798.2,ENST00000322285.7	chr5	75427474:75428155:75490743:75490924:75505560:75505712,	75490744	75490924	75490893	75490893	Frame_Shift_Del	T	-	p.F244fs
LIHC	TCGA-G3-A3CJ-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3,ENST00000514001.1,ENST00000505766.1	chr5	75960850:75961000:75964505:75964669:75967583:75967609,	75964506	75964669	75964534	75964534	Frame_Shift_Del	T	-	p.I903fs
LIHC	TCGA-G3-A3CJ-01	WDR41	ENST00000515253.1,ENST00000507029.1,ENST00000296679.4,ENST00000502528.1,ENST00000414719.2	chr5	76728717:76729112:76732085:76732219:76733160:76733249,	76732086	76732219	76732159	76732159	Frame_Shift_Del	T	-	p.K385fs
LIHC	TCGA-G3-A3CJ-01	WDR41	ENST00000515253.1,ENST00000509971.1,ENST00000506474.1,ENST00000514559.1,ENST00000505129.1,ENST00000506307.1,ENST00000296679.4,ENST00000507239.1,ENST00000504895.1,ENST00000507452.1,ENST00000515321.1,ENST00000509701.1,ENST00000414719.2,ENST00000511036.1,ENST00000503035.1	chr5	76754886:76754949:76758919:76759051:76760585:76760634,	76758920	76759051	76758960	76758960	Frame_Shift_Del	T	-	p.N103fs
LIHC	TCGA-G3-A3CJ-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77335012	77335012	Frame_Shift_Del	A	-	p.F888fs
LIHC	TCGA-G3-A3CJ-01	ARSB	ENST00000565165.1,ENST00000264914.4,ENST00000396151.3	chr5	78135178:78135249:78181406:78181650:78251117:78251325,	78181407	78181650	78181544	78181544	Frame_Shift_Del	G	-	p.P335fs
LIHC	TCGA-G3-A3CJ-01	ARSB	ENST00000565165.1,ENST00000264914.4,ENST00000396151.3	chr5	78135178:78135249:78181406:78181650:78251117:78251325,	78181407	78181650	78181609	78181609	Frame_Shift_Del	G	-	p.L314fs
LIHC	TCGA-G3-A3CJ-01	ARSB	ENST00000565165.1,ENST00000264914.4,ENST00000396151.3	chr5	78135178:78135249:78181406:78181650:78251117:78251325,	78181407	78181650	78181623	78181623	Frame_Shift_Del	C	-	p.G309fs
LIHC	TCGA-G3-A3CJ-01	BHMT2	ENST00000521567.1,ENST00000255192.3	chr5	78379014:78379197:78379450:78379679:78384315:78385018,	78379451	78379679	78379487	78379487	Frame_Shift_Del	A	-	p.Q273fs
LIHC	TCGA-G3-A3CJ-01	BHMT2	ENST00000521567.1,ENST00000255192.3	chr5	78379014:78379197:78379450:78379679:78384315:78385018,	78379451	78379679	78379634	78379634	Frame_Shift_Del	G	-	p.W322fs
LIHC	TCGA-G3-A3CJ-01	BHMT	ENST00000520703.1	chr5	78407631:78407741:78411589:78411722:78415081:78415200,	78411590	78411722	78411607	78411607	Frame_Shift_Del	A	-	p.L17fs
LIHC	TCGA-G3-A3CJ-01	SERINC5	ENST00000512721.1,ENST00000512972.2,ENST00000509193.1,ENST00000507668.2	chr5	79470776:79470870:79473136:79473219:79473707:79473886,	79473137	79473219	79473144	79473144	Frame_Shift_Del	A	-	p.F150fs
LIHC	TCGA-G3-A3CJ-01	SERINC5	ENST00000512721.1,ENST00000512972.2,ENST00000509193.1	chr5	79473707:79473886:79498704:79498872:79551714:79551838,	79498705	79498872	79498779	79498779	Frame_Shift_Del	G	-	p.L41fs
LIHC	TCGA-G3-A3CJ-01	ZFYVE16	ENST00000510995.1,ENST00000512558.1	chr5	79703933:79703972:79729927:79730036:79732574:79732978,	79729928	79730036	79730020	79730020	Frame_Shift_Del	T	-	p.D18fs
LIHC	TCGA-G3-A3CJ-01	ZFYVE16	ENST00000338008.5,ENST00000512558.1,ENST00000505560.1,ENST00000510158.1	chr5	79732574:79734826:79735754:79735851:79738941:79739103,	79735755	79735851	79735804	79735804	Frame_Shift_Del	A	-	p.E791fs
LIHC	TCGA-G3-A3CJ-01	CKMT2	ENST00000254035.4,ENST00000424301.2,ENST00000437669.1	chr5	80550214:80550310:80550811:80551033:80552733:80552759,	80550812	80551033	80550964	80550964	Frame_Shift_Del	G	-	p.K200fs
LIHC	TCGA-G3-A3CJ-01	ACOT12	ENST00000307624.3	chr5	80631586:80631720:80638490:80638574:80639636:80639700,	80638491	80638574	80638523	80638523	Frame_Shift_Del	T	-	p.R366fs
LIHC	TCGA-G3-A3CJ-01	ACOT12	ENST00000307624.3	chr5	80641703:80641823:80643592:80643749:80655721:80655857,	80643593	80643749	80643678	80643678	Frame_Shift_Del	G	-	p.L190fs
LIHC	TCGA-G3-A3CJ-01	ACOT12	ENST00000307624.3	chr5	80641703:80641823:80643592:80643749:80655721:80655857,	80643593	80643749	80643739	80643739	Frame_Shift_Del	A	-	p.F169fs
LIHC	TCGA-G3-A3CJ-01	SSBP2	ENST00000507655.1,ENST00000505980.1,ENST00000506960.1,ENST00000504174.1,ENST00000509053.1,ENST00000320672.4,ENST00000512098.1,ENST00000509013.2,ENST00000515395.1,ENST00000514493.1	chr5	80911304:80911376:80932375:80932437:80946085:80946158,	80932376	80932437	80932421	80932421	Frame_Shift_Del	T	-	p.N51fs
LIHC	TCGA-G3-A3CJ-01	ATG10	ENST00000458350.3,ENST00000504770.1,ENST00000282185.3,ENST00000513634.1	chr5	81283377:81283497:81354313:81354421:81443008:81443323,81283377:81283497:81354313:81354421:81460217:81460356,	81354314	81354421	81354338	81354338	Frame_Shift_Del	A	-	p.K45fs
LIHC	TCGA-G3-A3CJ-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815713	82815713	Frame_Shift_Del	A	-	p.K530fs
LIHC	TCGA-G3-A3CJ-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82834228	82834228	Frame_Shift_Del	G	-	p.L1802fs
LIHC	TCGA-G3-A3CJ-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835795	82835795	Frame_Shift_Del	G	-	p.G2325fs
LIHC	TCGA-G3-A3CJ-01	VCAN	ENST00000265077.3,ENST00000513016.1,ENST00000502527.2,ENST00000343200.5,ENST00000512590.2,ENST00000342785.4	chr5	82868234:82868379:82875798:82875981:82876125:82876267,	82875799	82875981	82875963	82875963	Frame_Shift_Del	A	-	p.K3349fs
LIHC	TCGA-G3-A3CJ-01	COX7C	ENST00000515763.1	chr5	85913789:85913947:85915169:85915259:85916484:85916583,	85915170	85915259	85915251	85915251	Frame_Shift_Del	T	-	p.F53fs
LIHC	TCGA-G3-A3CJ-01	COX7C	ENST00000511472.1	chr5	85913802:85913870:85915169:85915313:85916484:85916583,	85915170	85915313	85915251	85915251	Frame_Shift_Del	T	-	p.F53fs
LIHC	TCGA-G3-A3CJ-01	COX7C	ENST00000513124.1	chr5	85913802:85913870:85915169:85915695:85916484:85916583,	85915170	85915695	85915251	85915251	Frame_Shift_Del	T	-	p.F53fs
LIHC	TCGA-G3-A3CJ-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86667934:86668012:86669979:86670137:86670656:86670733,	86669980	86670137	86670033	86670033	Frame_Shift_Del	T	-	p.H433fs
LIHC	TCGA-G3-A3CJ-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86667934:86668012:86669979:86670137:86670656:86670733,	86669980	86670137	86670104	86670104	Frame_Shift_Del	A	-	p.Q457fs
LIHC	TCGA-G3-A3CJ-01	TMEM161B	ENST00000511087.1	chr5	87498778:87498892:87501617:87501771:87502255:87502316,	87501618	87501771	87501638	87501638	Frame_Shift_Del	T	-	p.I265fs
LIHC	TCGA-G3-A3CJ-01	TMEM161B	ENST00000514135.1,ENST00000509387.1,ENST00000512429.1,ENST00000296595.6,ENST00000506536.1,ENST00000511218.1,ENST00000507872.1	chr5	87498778:87498892:87501630:87501771:87502255:87502316,	87501631	87501771	87501638	87501638	Frame_Shift_Del	T	-	p.I265fs
LIHC	TCGA-G3-A3CJ-01	TMEM161B	ENST00000510089.1	chr5	87498778:87498892:87501570:87501771:87502255:87502316,	87501571	87501771	87501638	87501638	Frame_Shift_Del	T	-	p.I265fs
LIHC	TCGA-G3-A3CJ-01	TMEM161B	ENST00000511087.1	chr5	87498778:87498892:87501617:87501771:87502255:87502316,	87501618	87501771	87501703	87501703	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-G3-A3CJ-01	TMEM161B	ENST00000514135.1,ENST00000509387.1,ENST00000512429.1,ENST00000296595.6,ENST00000506536.1,ENST00000511218.1,ENST00000507872.1	chr5	87498778:87498892:87501630:87501771:87502255:87502316,	87501631	87501771	87501703	87501703	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-G3-A3CJ-01	TMEM161B	ENST00000510089.1	chr5	87498778:87498892:87501570:87501771:87502255:87502316,	87501571	87501771	87501703	87501703	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-G3-A3CJ-01	MEF2C	ENST00000506716.1,ENST00000513252.1,ENST00000424173.2	chr5	88047682:88047860:88056804:88056942:88100414:88100618,	88056805	88056942	88056849	88056849	Frame_Shift_Del	T	-	p.I138fs
LIHC	TCGA-G3-A3CJ-01	FAM172A	ENST00000502503.1,ENST00000509739.1	chr5	93300162:93300228:93388830:93388932:93410350:93410425,	93388831	93388932	93388871	93388871	Frame_Shift_Del	A	-	p.F56fs
LIHC	TCGA-G3-A3CJ-01	FAM172A	ENST00000502503.1	chr5	93388830:93388932:93410350:93410474:93447215:93447340,	93410351	93410474	93410389	93410389	Frame_Shift_Del	C	-	p.G24fs
LIHC	TCGA-G3-A3CJ-01	MCTP1	ENST00000515393.1,ENST00000508509.1,ENST00000505208.1,ENST00000429576.2,ENST00000505078.1,ENST00000312216.8,ENST00000506568.4,ENST00000512425.1	chr5	94204037:94204157:94206121:94206196:94206576:94206678,	94206122	94206196	94206138	94206138	Frame_Shift_Del	T	-	p.N767fs
LIHC	TCGA-G3-A3CJ-01	FAM81B	ENST00000507832.1,ENST00000283357.5	chr5	94772503:94772610:94782265:94782401:94783972:94784168,	94782266	94782401	94782312	94782312	Frame_Shift_Del	A	-	p.K315fs
LIHC	TCGA-G3-A3CJ-01	TTC37	ENST00000358746.2,ENST00000508181.1	chr5	94838606:94838707:94839517:94839642:94842637:94842696,	94839518	94839642	94839604	94839604	Frame_Shift_Del	T	-	p.K1044fs
LIHC	TCGA-G3-A3CJ-01	ARSK	ENST00000504873.1,ENST00000380009.4	chr5	94901701:94901831:94903593:94903753:94918619:94918902,	94903594	94903753	94903644	94903644	Frame_Shift_Del	A	-	p.K103fs
LIHC	TCGA-G3-A3CJ-01	ARSK	ENST00000504873.1,ENST00000513814.1,ENST00000380009.4	chr5	94918619:94918902:94922265:94922437:94927104:94927329,	94922266	94922437	94922346	94922346	Frame_Shift_Del	A	-	p.T260fs
LIHC	TCGA-G3-A3CJ-01	ARSK	ENST00000504873.1,ENST00000513814.1,ENST00000380009.4	chr5	94918619:94918902:94922265:94922437:94927104:94927329,	94922266	94922437	94922370	94922370	Frame_Shift_Del	A	-	p.T268fs
LIHC	TCGA-G3-A3CJ-01	SPATA9	ENST00000477047.2,ENST00000274432.8,ENST00000316087.8	chr5	94999656:94999752:95011115:95011343:95018231:95018320,	95011116	95011343	95011130	95011130	Frame_Shift_Del	G	-	p.L122fs
LIHC	TCGA-G3-A3CJ-01	RHOBTB3	ENST00000504949.1,ENST00000379982.3	chr5	95084036:95084191:95087942:95088054:95091099:95091245,	95087943	95088054	95087986	95087986	Frame_Shift_Del	A	-	p.E205fs
LIHC	TCGA-G3-A3CJ-01	RHOBTB3	ENST00000379982.3	chr5	95087942:95088054:95091099:95091465:95099211:95099246,	95091100	95091465	95091331	95091331	Frame_Shift_Del	T	-	p.L305fs
LIHC	TCGA-G3-A3CJ-01	RHOBTB3	ENST00000503737.1,ENST00000379982.3,ENST00000504179.1	chr5	95119537:95119667:95124465:95124562:95128762:95128874,	95124466	95124562	95124536	95124536	Frame_Shift_Del	A	-	p.Q565fs
LIHC	TCGA-G3-A3CJ-01	ELL2	ENST00000513343.1	chr5	95236396:95236484:95236659:95236784:95242226:95242486,95236396:95236484:95236659:95236784:95278705:95278717,	95236660	95236784	95236678	95236678	Frame_Shift_Del	A	-	p.L283fs
LIHC	TCGA-G3-A3CJ-01	ELL2	ENST00000237853.4	chr5	95236659:95236784:95242226:95242486:95249474:95249638,	95242227	95242486	95242236	95242236	Frame_Shift_Del	A	-	p.I244fs
LIHC	TCGA-G3-A3CJ-01	ELL2	ENST00000237853.4	chr5	95242227:95242486:95249474:95249638:95255127:95255249,	95249475	95249638	95249520	95249520	Frame_Shift_Del	G	-	p.R146fs
LIHC	TCGA-G3-A3CJ-01	CAST	ENST00000504465.1,ENST00000506811.1,ENST00000309190.5,ENST00000338252.3,ENST00000512620.1,ENST00000505143.1,ENST00000325674.7,ENST00000511097.2,ENST00000508608.1,ENST00000510156.1,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000395813.1,ENST00000508197.1,ENST00000511049.1,ENST00000510756.1,ENST00000509903.1	chr5	96063192:96063234:96064856:96064913:96065315:96065395,	96064857	96064913	96064875	96064875	Frame_Shift_Del	A	-	p.K134fs
LIHC	TCGA-G3-A3CJ-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000338252.3,ENST00000325674.7,ENST00000503828.1,ENST00000508608.1,ENST00000510156.1,ENST00000348386.3,ENST00000508830.1,ENST00000513666.1,ENST00000511782.1,ENST00000341926.3,ENST00000508579.1,ENST00000395813.1,ENST00000437034.2,ENST00000510500.1,ENST00000395812.2,ENST00000511049.1,ENST00000510756.1,ENST00000509903.1	chr5	96078358:96078460:96082045:96082129:96083048:96083096,	96082046	96082129	96082048	96082048	Frame_Shift_Del	A	-	p.A401fs
LIHC	TCGA-G3-A3CJ-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000338252.3,ENST00000325674.7,ENST00000508608.1,ENST00000510156.1,ENST00000348386.3,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000510098.1,ENST00000508579.1,ENST00000395813.1,ENST00000437034.2,ENST00000395812.2,ENST00000515663.1,ENST00000510756.1,ENST00000509903.1	chr5	96093289:96093358:96097977:96098076:96100927:96101029,96093289:96093358:96097977:96098076:96100924:96101029,	96097978	96098076	96098030	96098030	Frame_Shift_Del	C	-	p.T629fs
LIHC	TCGA-G3-A3CJ-01	CAST	ENST00000359176.4,ENST00000504465.1,ENST00000309190.5,ENST00000338252.3,ENST00000325674.7,ENST00000508608.1,ENST00000510156.1,ENST00000348386.3,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000510098.1,ENST00000508579.1,ENST00000395813.1,ENST00000437034.2,ENST00000395812.2,ENST00000515663.1,ENST00000510756.1,ENST00000509903.1	chr5	96093289:96093358:96097977:96098076:96100927:96101029,96093289:96093358:96097977:96098076:96100924:96101029,	96097978	96098076	96098057	96098057	Frame_Shift_Del	C	-	p.A638fs
LIHC	TCGA-G3-A3CJ-01	ERAP1	ENST00000296754.3,ENST00000443439.2,ENST00000507859.1	chr5	96122173:96122253:96124233:96124388:96125998:96126070,	96124234	96124388	96124323	96124323	Frame_Shift_Del	A	-	p.F530fs
LIHC	TCGA-G3-A3CJ-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315642	96315642	Frame_Shift_Del	T	-	p.F274fs
LIHC	TCGA-G3-A3CJ-01	CHD1	ENST00000512844.1	chr5	98194667:98194719:98195675:98195772:98199111:98199290,98194667:98194719:98195675:98195772:98204198:98204243,	98195676	98195772	98195724	98195724	Frame_Shift_Del	T	-	p.K1492fs
LIHC	TCGA-G3-A3CJ-01	CHD1	ENST00000284049.3	chr5	98236514:98236786:98236889:98237039:98238603:98238668,	98236890	98237039	98236920	98236920	Frame_Shift_Del	T	-	p.N186fs
LIHC	TCGA-G3-A3CJ-01	SLCO6A1	ENST00000379807.3,ENST00000514551.1,ENST00000389019.3,ENST00000506729.1	chr5	101755626:101755725:101774320:101774465:101794085:101794195,	101774321	101774465	101774421	101774421	Frame_Shift_Del	T	-	p.K392fs
LIHC	TCGA-G3-A3CJ-01	PAM	ENST00000438793.3,ENST00000346918.2,ENST00000274392.9,ENST00000345721.2,ENST00000304400.7,ENST00000379787.4,ENST00000455264.2,ENST00000379799.3	chr5	102296867:102296933:102309819:102310140:102325975:102326105,	102309820	102310140	102309949	102309949	Frame_Shift_Del	A	-	p.Q431fs
LIHC	TCGA-G3-A3CJ-01	PAM	ENST00000438793.3,ENST00000348126.2	chr5	102355493:102355547:102360834:102361038:102363885:102363926,102355493:102355547:102360834:102361038:102364590:102364814,102355493:102355547:102360834:102361038:102363888:102363942,	102360835	102361038	102361017	102361017	Frame_Shift_Del	A	-	p.K891fs
LIHC	TCGA-G3-A3CJ-01	PAM	ENST00000504456.1	chr5	102355493:102355547:102360837:102361038:102363888:102363942,102355493:102355547:102360837:102361038:102363885:102363926,	102360838	102361038	102361017	102361017	Frame_Shift_Del	A	-	p.K891fs
LIHC	TCGA-G3-A3CJ-01	GIN1	ENST00000512248.1,ENST00000399004.2	chr5	102423829:102423876:102432244:102432530:102433017:102433194,	102432245	102432530	102432281	102432281	Frame_Shift_Del	G	-	p.H420fs
LIHC	TCGA-G3-A3CJ-01	GIN1	ENST00000512248.1,ENST00000399004.2	chr5	102423829:102423876:102432244:102432530:102433017:102433194,	102432245	102432530	102432377	102432377	Frame_Shift_Del	C	-	p.V388fs
LIHC	TCGA-G3-A3CJ-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1	chr5	102491612:102491698:102493891:102494017:102494155:102494277,	102493892	102494017	102493973	102493973	Frame_Shift_Del	A	-	p.E525fs
LIHC	TCGA-G3-A3CJ-01	PPIP5K2	ENST00000321521.9,ENST00000513500.1,ENST00000358359.3,ENST00000414217.1,ENST00000507966.3	chr5	102515721:102515889:102518934:102519108:102520372:102520445,	102518935	102519108	102518961	102518961	Frame_Shift_Del	C	-	p.S983fs
LIHC	TCGA-G3-A3CJ-01	PPIP5K2	ENST00000321521.9,ENST00000414217.1	chr5	102522020:102522140:102526542:102526683:102530600:102530726,	102526543	102526683	102526615	102526615	Frame_Shift_Del	A	-	p.Q1121fs
LIHC	TCGA-G3-A3CJ-01	EFNA5	ENST00000509503.1	chr5	106716938:106717077:106723406:106723472:106762917:106763210,	106723407	106723472	106723420	106723420	Frame_Shift_Del	A	-	p.F157fs
LIHC	TCGA-G3-A3CJ-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290538	108290538	Frame_Shift_Del	T	-	p.F480fs
LIHC	TCGA-G3-A3CJ-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290538	108290538	Frame_Shift_Del	T	-	p.F480fs
LIHC	TCGA-G3-A3CJ-01	MAN2A1	ENST00000261483.4	chr5	109124634:109124749:109125160:109125228:109152973:109153139,	109125161	109125228	109125195	109125195	Frame_Shift_Del	A	-	p.Q637fs
LIHC	TCGA-G3-A3CJ-01	TMEM232	ENST00000515518.2,ENST00000429839.2,ENST00000455884.2,ENST00000511883.2	chr5	109963481:109963581:109973898:109974056:109976591:109976697,	109973899	109974056	109973983	109973983	Frame_Shift_Del	A	-	p.F139fs
LIHC	TCGA-G3-A3CJ-01	EPB41L4A	ENST00000507810.1,ENST00000261486.5	chr5	111540071:111540185:111541117:111541201:111545588:111545669,	111541118	111541201	111541130	111541130	Frame_Shift_Del	T	-	p.N417fs
LIHC	TCGA-G3-A3CJ-01	DCP2	ENST00000515408.1	chr5	112337263:112337371:112339638:112339774:112343634:112343686,112337263:112337371:112339638:112339774:112346452:112346504,	112339639	112339774	112339673	112339673	Frame_Shift_Del	C	-	p.P281fs
LIHC	TCGA-G3-A3CJ-01	PGGT1B	ENST00000514178.1,ENST00000419445.1	chr5	114552561:114552670:114557520:114557705:114566672:114566718,	114557521	114557705	114557643	114557643	Frame_Shift_Del	A	-	p.S241fs
LIHC	TCGA-G3-A3CJ-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114606944	114606944	Frame_Shift_Del	T	-	p.N433fs
LIHC	TCGA-G3-A3CJ-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114607084	114607084	Frame_Shift_Del	T	-	p.K386fs
LIHC	TCGA-G3-A3CJ-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114607201	114607201	Frame_Shift_Del	T	-	p.K347fs
LIHC	TCGA-G3-A3CJ-01	ATG12	ENST00000379594.3,ENST00000274459.4,ENST00000513167.1,ENST00000513322.1,ENST00000509598.1,ENST00000509910.1,ENST00000511984.1,ENST00000505993.1	chr5	115167416:115167560:115168298:115168361:115173324:115173461,	115168299	115168361	115168348	115168348	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-G3-A3CJ-01	ATG12	ENST00000509910.1	chr5	115168298:115168361:115173324:115173461:115177086:115177241,	115173325	115173461	115173356	115173356	Frame_Shift_Del	T	-	p.K90fs
LIHC	TCGA-G3-A3CJ-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205768	115205768	Frame_Shift_Del	T	-	p.Y72fs
LIHC	TCGA-G3-A3CJ-01	AP3S1	ENST00000316788.7,ENST00000506430.2,ENST00000395548.2,ENST00000507436.1	chr5	115202368:115202458:115205713:115205825:115230783:115230855,	115205714	115205825	115205794	115205794	Frame_Shift_Del	A	-	p.E81fs
LIHC	TCGA-G3-A3CJ-01	COMMD10	ENST00000274458.4,ENST00000507356.1,ENST00000515539.1	chr5	115423193:115423284:115426775:115426886:115428241:115428392,	115426776	115426886	115426807	115426807	Frame_Shift_Del	A	-	p.E55fs
LIHC	TCGA-G3-A3CJ-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118500201:118500371:118500877:118500975:118502310:118502476,	118500878	118500975	118500927	118500927	Frame_Shift_Del	T	-	p.I1641fs
LIHC	TCGA-G3-A3CJ-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118502310:118502476:118503297:118503559:118505884:118506230,	118503298	118503559	118503400	118503400	Frame_Shift_Del	A	-	p.K1748fs
LIHC	TCGA-G3-A3CJ-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118502310:118502476:118503297:118503559:118505884:118506230,	118503298	118503559	118503524	118503524	Frame_Shift_Del	A	-	p.E1788fs
LIHC	TCGA-G3-A3CJ-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506333	118506333	Frame_Shift_Del	T	-	p.S1949fs
LIHC	TCGA-G3-A3CJ-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118503323:118503559:118505884:118506975:118507472:118507602,	118505885	118506975	118506588	118506588	Frame_Shift_Del	A	-	p.L2034fs
LIHC	TCGA-G3-A3CJ-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118506410:118506975:118507472:118507664:118510955:118511032,	118507473	118507664	118507638	118507638	Frame_Shift_Del	C	-	p.P2219fs
LIHC	TCGA-G3-A3CJ-01	HSD17B4	ENST00000513628.1,ENST00000515235.2,ENST00000442060.3,ENST00000510025.1,ENST00000509514.1,ENST00000256216.6,ENST00000518349.1,ENST00000504811.1,ENST00000414835.2,ENST00000515320.1,ENST00000520244.1	chr5	118837743:118837787:118842512:118842584:118844835:118844939,	118842513	118842584	118842520	118842520	Frame_Shift_Del	A	-	p.L448fs
LIHC	TCGA-G3-A3CJ-01	LOX	ENST00000505593.1,ENST00000513319.1,ENST00000231004.4,ENST00000503759.1	chr5	121405747:121405863:121406188:121406284:121409707:121409864,	121406189	121406284	121406236	121406236	Frame_Shift_Del	G	-	p.Q362fs
LIHC	TCGA-G3-A3CJ-01	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121761046:121761226:121767663:121767777,121758562:121759434:121761046:121761226:121767663:121767777,	121761047	121761226	121761157	121761157	Frame_Shift_Del	T	-	p.S418fs
LIHC	TCGA-G3-A3CJ-01	SNCAIP	ENST00000261367.7,ENST00000379533.2,ENST00000510003.1,ENST00000503116.2,ENST00000261368.8,ENST00000395469.2	chr5	121739487:121739560:121761046:121761226:121767663:121767777,121758562:121759434:121761046:121761226:121767663:121767777,	121761047	121761226	121761212	121761212	Frame_Shift_Del	G	-	p.G437fs
LIHC	TCGA-G3-A3CJ-01	SNCAIP	ENST00000512146.2,ENST00000512385.1,ENST00000508017.1,ENST00000379538.3,ENST00000515215.2	chr5	121761046:121761226:121767663:121767777:121776323:121776449,121739487:121739560:121767663:121767777:121776323:121776449,	121767664	121767777	121767731	121767731	Frame_Shift_Del	C	-	p.S464fs
LIHC	TCGA-G3-A3CJ-01	PPIC	ENST00000306442.4	chr5	122361478:122361663:122364469:122364563:122364999:122365113,	122364470	122364563	122364514	122364514	Frame_Shift_Del	A	-	p.F94fs
LIHC	TCGA-G3-A3CJ-01	PRDM6	ENST00000407847.4	chr5	122491577:122491705:122495207:122495332:122506459:122506629,	122495208	122495332	122495327	122495327	Frame_Shift_Del	A	-	p.E383fs
LIHC	TCGA-G3-A3CJ-01	PRDM6	ENST00000434521.1	chr5	122435440:122435656:122506459:122506802:122515840:122515979,	122506460	122506802	122506726	122506726	Frame_Shift_Del	A	-	p.K474fs
LIHC	TCGA-G3-A3CJ-01	CEP120	ENST00000306467.5,ENST00000508442.2,ENST00000513565.2,ENST00000328236.5,ENST00000510582.3,ENST00000395431.2,ENST00000306481.6	chr5	122734945:122734978:122748092:122748234:122751703:122751818,	122748093	122748234	122748114	122748114	Frame_Shift_Del	C	-	p.A148fs
LIHC	TCGA-G3-A3CJ-01	ZNF608	ENST00000504926.1,ENST00000306315.5,ENST00000513985.1	chr5	123974825:123974907:123976944:123977098:123979203:123979358,	123976945	123977098	123976949	123976949	Frame_Shift_Del	A	-	p.F1482fs
LIHC	TCGA-G3-A3CJ-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123982738	123982738	Frame_Shift_Del	C	-	p.R1113fs
LIHC	TCGA-G3-A3CJ-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984684	123984684	Frame_Shift_Del	C	-	p.A465fs
LIHC	TCGA-G3-A3CJ-01	PHAX	ENST00000297540.4,ENST00000511371.1	chr5	125944055:125944176:125952941:125953025:125960266:125960901,	125952942	125953025	125952990	125952990	Frame_Shift_Del	A	-	p.K294fs
LIHC	TCGA-G3-A3CJ-01	LMNB1	ENST00000504788.1,ENST00000261366.5,ENST00000460265.1	chr5	126158472:126158577:126161679:126161799:126168385:126168493,	126161680	126161799	126161712	126161712	Frame_Shift_Del	C	-	p.S508fs
LIHC	TCGA-G3-A3CJ-01	MARCH3	ENST00000308660.5	chr5	126205882:126206483:126213876:126214086:126250621:126250682,	126213877	126214086	126213882	126213882	Frame_Shift_Del	T	-	p.T200fs
LIHC	TCGA-G3-A3CJ-01	MEGF10	ENST00000274473.6,ENST00000503335.2	chr5	126758383:126758464:126769054:126769201:126770378:126770513,	126769055	126769201	126769171	126769171	Frame_Shift_Del	C	-	p.P604fs
LIHC	TCGA-G3-A3CJ-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126859151:126859274:126860222:126860612:126862309:126862470,	126860223	126860612	126860236	126860236	Frame_Shift_Del	T	-	p.S39fs
LIHC	TCGA-G3-A3CJ-01	SLC12A2	ENST00000262461.2,ENST00000509205.1,ENST00000343225.4	chr5	127474288:127474416:127474515:127474600:127477521:127477673,	127474516	127474600	127474540	127474540	Frame_Shift_Del	G	-	p.G521fs
LIHC	TCGA-G3-A3CJ-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127648325:127648487:127653840:127653963:127654570:127654693,	127653841	127653963	127653872	127653872	Frame_Shift_Del	A	-	p.F1562fs
LIHC	TCGA-G3-A3CJ-01	LYRM7	ENST00000507584.1	chr5	130515787:130515860:130517921:130517992:130522720:130522802,130515787:130515860:130517921:130517992:130535223:130535346,	130517922	130517992	130517951	130517951	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	ACSL6	ENST00000379249.3,ENST00000379244.1,ENST00000296869.4,ENST00000413683.1,ENST00000543479.1,ENST00000434099.1	chr5	131308958:131309093:131310450:131310528:131312340:131312414,	131310451	131310528	131310479	131310479	Frame_Shift_Del	A	-	p.L322fs
LIHC	TCGA-G3-A3CJ-01	PDLIM4	ENST00000253754.3,ENST00000379018.3,ENST00000418373.1	chr5	131602156:131602238:131606607:131606786:131606995:131607029,	131606608	131606786	131606779	131606779	Frame_Shift_Del	C	-	p.P168fs
LIHC	TCGA-G3-A3CJ-01	SLC22A5	ENST00000447841.1	chr5	131724612:131724713:131728124:131728307:131729367:131729375,	131728125	131728307	131728159	131728159	Frame_Shift_Del	G	-	p.V434fs
LIHC	TCGA-G3-A3CJ-01	SLC22A5	ENST00000475308.1,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1,ENST00000447841.1	chr5	131728124:131728307:131729367:131729503:131729876:131729964,	131729368	131729503	131729468	131729468	Frame_Shift_Del	C	-	p.L517fs
LIHC	TCGA-G3-A3CJ-01	RAD50	ENST00000265335.6,ENST00000378823.3,ENST00000533482.1	chr5	131925322:131925529:131926915:131927098:131927568:131927726,	131926916	131927098	131926963	131926963	Frame_Shift_Del	A	-	p.L361fs
LIHC	TCGA-G3-A3CJ-01	KIF3A	ENST00000378746.4	chr5	132039154:132039311:132046650:132046749:132051448:132051623,	132046651	132046749	132046657	132046657	Frame_Shift_Del	T	-	p.R409fs
LIHC	TCGA-G3-A3CJ-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232560	132232560	Frame_Shift_Del	T	-	p.T588fs
LIHC	TCGA-G3-A3CJ-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232756	132232756	Frame_Shift_Del	T	-	p.K522fs
LIHC	TCGA-G3-A3CJ-01	HSPA4	ENST00000304858.2	chr5	132435236:132435344:132437450:132437570:132439556:132439718,	132437451	132437570	132437501	132437501	Frame_Shift_Del	A	-	p.P696fs
LIHC	TCGA-G3-A3CJ-01	HSPA4	ENST00000304858.2	chr5	132435236:132435344:132437450:132437570:132439556:132439718,	132437451	132437570	132437558	132437558	Frame_Shift_Del	T	-	p.S715fs
LIHC	TCGA-G3-A3CJ-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316579	133316579	Frame_Shift_Del	A	-	p.F131fs
LIHC	TCGA-G3-A3CJ-01	VDAC1	ENST00000466080.1,ENST00000395047.2,ENST00000395044.3,ENST00000265333.3,ENST00000425992.1	chr5	133326692:133326845:133327996:133328046:133328636:133328706,	133327997	133328046	133328017	133328017	Frame_Shift_Del	T	-	p.T33fs
LIHC	TCGA-G3-A3CJ-01	CDKL3	ENST00000435240.2,ENST00000520592.1,ENST00000520693.1	chr5	133643828:133644157:133644264:133644418:133647982:133648071,133643828:133644157:133644264:133644418:133657481:133657594,133643828:133644157:133644264:133644418:133655048:133655080,	133644265	133644418	133644309	133644309	Frame_Shift_Del	T	-	p.T331fs
LIHC	TCGA-G3-A3CJ-01	CDKL3	ENST00000536186.1	chr5	133644264:133644418:133647982:133648071:133655048:133655080,133643828:133644157:133647982:133648071:133655048:133655080,133644264:133644418:133647982:133648071:133657481:133657594,	133647983	133648071	133648022	133648022	Frame_Shift_Del	A	-	p.L281fs
LIHC	TCGA-G3-A3CJ-01	CDKL3	ENST00000435211.1,ENST00000265334.4,ENST00000523832.1,ENST00000521118.1,ENST00000523054.1	chr5	133657481:133657594:133685939:133686118:133695587:133695782,	133685940	133686118	133686098	133686098	Frame_Shift_Del	T	-	p.K127fs
LIHC	TCGA-G3-A3CJ-01	UBE2B	ENST00000265339.2,ENST00000506787.1	chr5	133712364:133712385:133716409:133716499:133724015:133724104,	133716410	133716499	133716481	133716481	Frame_Shift_Del	A	-	p.K75fs
LIHC	TCGA-G3-A3CJ-01	H2AFY	ENST00000504197.1,ENST00000508120.1,ENST00000508785.1,ENST00000507868.1,ENST00000304332.4	chr5	134696208:134696294:134705095:134705293:134705725:134705832,	134705096	134705293	134705202	134705202	Frame_Shift_Del	A	-	p.L124fs
LIHC	TCGA-G3-A3CJ-01	SMAD5	ENST00000545620.1	chr5	135468592:135468651:135489280:135489852:135496544:135496796,	135489281	135489852	135489707	135489707	Frame_Shift_Del	T	-	p.H86fs
LIHC	TCGA-G3-A3CJ-01	MYOT	ENST00000239926.4,ENST00000515645.1,ENST00000421631.2	chr5	137219072:137219280:137221736:137221902:137222552:137222686,	137221737	137221902	137221784	137221784	Frame_Shift_Del	A	-	p.K359fs
LIHC	TCGA-G3-A3CJ-01	FAM13B	ENST00000033079.3	chr5	137281590:137281686:137281916:137282000:137284643:137284783,	137281917	137282000	137281952	137281952	Frame_Shift_Del	T	-	p.S715fs
LIHC	TCGA-G3-A3CJ-01	FAM13B	ENST00000425075.2,ENST00000033079.3,ENST00000420893.2	chr5	137320945:137321078:137323149:137323305:137323962:137324004,	137323150	137323305	137323260	137323260	Frame_Shift_Del	A	-	p.F312fs
LIHC	TCGA-G3-A3CJ-01	NME5	ENST00000506657.1,ENST00000265191.2	chr5	137451241:137451453:137454506:137454625:137464167:137464268,	137454507	137454625	137454522	137454522	Frame_Shift_Del	T	-	p.K180fs
LIHC	TCGA-G3-A3CJ-01	NME5	ENST00000265191.2	chr5	137464167:137464268:137464951:137465157:137474340:137474474,	137464952	137465157	137465087	137465087	Frame_Shift_Del	A	-	p.F67fs
LIHC	TCGA-G3-A3CJ-01	BRD8	ENST00000411594.2,ENST00000230901.5,ENST00000441656.1,ENST00000454473.1,ENST00000418329.1	chr5	137503675:137503767:137504158:137504377:137504910:137504984,	137504159	137504377	137504219	137504219	Frame_Shift_Del	G	-	p.P267fs
LIHC	TCGA-G3-A3CJ-01	CDC23	ENST00000394886.2	chr5	137534114:137534212:137534293:137534471:137536795:137536928,	137534294	137534471	137534350	137534350	Frame_Shift_Del	A	-	p.F259fs
LIHC	TCGA-G3-A3CJ-01	KDM3B	ENST00000314358.5	chr5	137717204:137717279:137721710:137722310:137726701:137727950,	137721711	137722310	137721971	137721971	Frame_Shift_Del	C	-	p.V347fs
LIHC	TCGA-G3-A3CJ-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137756394:137756651:137759763:137760030:137761099:137761271,	137759764	137760030	137759904	137759904	Frame_Shift_Del	G	-	p.M1371fs
LIHC	TCGA-G3-A3CJ-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137756394:137756651:137759763:137760030:137761099:137761271,	137759764	137760030	137759976	137759976	Frame_Shift_Del	C	-	p.D1395fs
LIHC	TCGA-G3-A3CJ-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000360541.5	chr5	137843678:137844076:137844357:137844505:137846253:137846318,	137844358	137844505	137844392	137844392	Frame_Shift_Del	C	-	p.G366fs
LIHC	TCGA-G3-A3CJ-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000506345.1,ENST00000360541.5,ENST00000572514.1,ENST00000503183.1	chr5	137848460:137848643:137849256:137849395:137853249:137853330,	137849257	137849395	137849265	137849265	Frame_Shift_Del	T	-	p.K146fs
LIHC	TCGA-G3-A3CJ-01	HSPA9	ENST00000297185.3,ENST00000512328.1	chr5	137893090:137893185:137893557:137893675:137894241:137894320,	137893558	137893675	137893625	137893625	Frame_Shift_Del	A	-	p.F522fs
LIHC	TCGA-G3-A3CJ-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643695	138643695	Frame_Shift_Del	C	-	p.N197fs
LIHC	TCGA-G3-A3CJ-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643695	138643695	Frame_Shift_Del	C	-	p.N197fs
LIHC	TCGA-G3-A3CJ-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643906	138643906	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-G3-A3CJ-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643906	138643906	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-G3-A3CJ-01	SLC23A1	ENST00000348729.3	chr5	138715644:138715765:138715896:138716078:138716253:138716296,	138715897	138716078	138715945	138715945	Frame_Shift_Del	A	-	p.F204fs
LIHC	TCGA-G3-A3CJ-01	UBE2D2	ENST00000505548.1,ENST00000505007.1,ENST00000511691.1,ENST00000398733.3,ENST00000253815.2,ENST00000511725.1,ENST00000398734.4	chr5	138994170:138994202:138994281:138994359:138994445:138994551,	138994282	138994359	138994309	138994309	Frame_Shift_Del	T	-	p.F22fs
LIHC	TCGA-G3-A3CJ-01	UBE2D2	ENST00000505548.1,ENST00000398733.3,ENST00000253815.2,ENST00000511725.1,ENST00000398734.4	chr5	138994445:138994551:139002952:139003046:139006340:139006440,	139002953	139003046	139003043	139003043	Frame_Shift_Del	A	-	p.E103fs
LIHC	TCGA-G3-A3CJ-01	NRG2	ENST00000340391.3,ENST00000361474.1	chr5	139244699:139244758:139245133:139245210:139251305:139251388,139235333:139235363:139245133:139245210:139251305:139251388,	139245134	139245210	139245163	139245163	Frame_Shift_Del	A	-	p.L387fs
LIHC	TCGA-G3-A3CJ-01	NRG2	ENST00000289422.7,ENST00000340391.3,ENST00000378238.4,ENST00000361474.1,ENST00000394770.1	chr5	139245133:139245210:139251305:139251426:139260440:139260559,	139251306	139251426	139251398	139251398	Frame_Shift_Del	C	-	p.G340fs
LIHC	TCGA-G3-A3CJ-01	PFDN1	ENST00000510217.1	chr5	139625136:139625642:139661033:139661118:139680000:139680167,139625136:139625642:139661033:139661118:139682625:139682668,	139661034	139661118	139661048	139661048	Frame_Shift_Del	T	-	p.I91fs
LIHC	TCGA-G3-A3CJ-01	APBB3	ENST00000356738.2,ENST00000354402.5,ENST00000515056.1,ENST00000412920.3,ENST00000357560.4,ENST00000511896.1,ENST00000509914.1,ENST00000510241.1,ENST00000467078.1,ENST00000508496.2	chr5	139939985:139940089:139940223:139940339:139940602:139940686,	139940224	139940339	139940230	139940230	Frame_Shift_Del	G	-	p.P342fs
LIHC	TCGA-G3-A3CJ-01	TMCO6	ENST00000537378.1,ENST00000252100.6,ENST00000510336.1,ENST00000394671.3	chr5	140023684:140023779:140024157:140024325:140024569:140024987,	140024158	140024325	140024233	140024233	Frame_Shift_Del	C	-	p.P426fs
LIHC	TCGA-G3-A3CJ-01	TMCO6	ENST00000537378.1,ENST00000252100.6,ENST00000510336.1,ENST00000394671.3	chr5	140023684:140023779:140024157:140024325:140024569:140024987,	140024158	140024325	140024257	140024257	Frame_Shift_Del	T	-	p.F434fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP26	ENST00000274498.4,ENST00000475287.1,ENST00000378004.3	chr5	142264862:142264964:142273802:142273913:142281499:142281578,	142273803	142273913	142273902	142273902	Frame_Shift_Del	T	-	p.F196fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP26	ENST00000274498.4,ENST00000378004.3	chr5	142281499:142281604:142283104:142283234:142287268:142287369,	142283105	142283234	142283153	142283153	Frame_Shift_Del	A	-	p.K252fs
LIHC	TCGA-G3-A3CJ-01	NR3C1	ENST00000394464.2,ENST00000415690.2,ENST00000343796.2,ENST00000504336.1,ENST00000424646.2,ENST00000416954.2,ENST00000503201.1	chr5	142680125:142680328:142689661:142689778:142693566:142693733,	142689662	142689778	142689715	142689715	Frame_Shift_Del	T	-	p.N472fs
LIHC	TCGA-G3-A3CJ-01	NR3C1	ENST00000503201.1	chr5	142693566:142693733:142779220:142780417:142783940:142784035,	142779221	142780417	142779623	142779623	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-G3-A3CJ-01	NR3C1	ENST00000503201.1	chr5	142693566:142693733:142779220:142780417:142783940:142784035,	142779221	142780417	142779794	142779794	Frame_Shift_Del	G	-	p.P204fs
LIHC	TCGA-G3-A3CJ-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586323	143586323	Frame_Shift_Del	G	-	p.G16fs
LIHC	TCGA-G3-A3CJ-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586434	143586434	Frame_Shift_Del	A	-	p.K53fs
LIHC	TCGA-G3-A3CJ-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586444	143586444	Frame_Shift_Del	C	-	p.S56fs
LIHC	TCGA-G3-A3CJ-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586930	143586930	Frame_Shift_Del	C	-	p.A218fs
LIHC	TCGA-G3-A3CJ-01	PRELID2	ENST00000511435.1,ENST00000334744.4,ENST00000358004.2,ENST00000505416.1,ENST00000515475.1	chr5	145199507:145199581:145202639:145202697:145214739:145214796,	145202640	145202697	145202658	145202658	Frame_Shift_Del	T	-	p.I39fs
LIHC	TCGA-G3-A3CJ-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145383620:145383716:145393309:145393624:145427334:145427426,	145393310	145393624	145393369	145393369	Frame_Shift_Del	A	-	p.T268fs
LIHC	TCGA-G3-A3CJ-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145383620:145383716:145393309:145393624:145427334:145427426,	145393310	145393624	145393380	145393380	Frame_Shift_Del	C	-	p.S272fs
LIHC	TCGA-G3-A3CJ-01	LARS	ENST00000545646.1,ENST00000274562.9,ENST00000510191.1,ENST00000394434.2	chr5	145515163:145515227:145519766:145519824:145522434:145522647,	145519767	145519824	145519818	145519818	Frame_Shift_Del	T	-	p.K699fs
LIHC	TCGA-G3-A3CJ-01	LARS	ENST00000545646.1,ENST00000274562.9,ENST00000510191.1,ENST00000507095.1,ENST00000394434.2,ENST00000508667.1	chr5	145524225:145524272:145529184:145529262:145531424:145531470,	145529185	145529262	145529198	145529198	Frame_Shift_Del	T	-	p.K497fs
LIHC	TCGA-G3-A3CJ-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145634505:145634655:145638011:145638156:145640307:145640461,	145638012	145638156	145638059	145638059	Frame_Shift_Del	A	-	p.N548fs
LIHC	TCGA-G3-A3CJ-01	JAKMIP2	ENST00000265272.5,ENST00000504845.1,ENST00000333010.6	chr5	147012242:147012341:147015784:147015847:147016527:147016611,	147015785	147015847	147015816	147015816	Frame_Shift_Del	A	-	p.F549fs
LIHC	TCGA-G3-A3CJ-01	SCGB3A2	ENST00000514688.1	chr5	147258273:147258421:147261008:147261211:147261589:147261753,147251739:147251884:147261008:147261211:147261589:147261753,	147261009	147261211	147261035	147261035	Frame_Shift_Del	C	-	p.P28fs
LIHC	TCGA-G3-A3CJ-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147806783	147806783	Frame_Shift_Del	A	-	p.G642fs
LIHC	TCGA-G3-A3CJ-01	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147806783	147806783	Frame_Shift_Del	A	-	p.G642fs
LIHC	TCGA-G3-A3CJ-01	CSNK1A1	ENST00000504676.1,ENST00000261798.5,ENST00000606299.1,ENST00000515768.1,ENST00000515435.1,ENST00000503350.2,ENST00000377843.2,ENST00000606826.1,ENST00000606719.1	chr5	148885069:148885158:148886589:148886696:148889441:148889516,	148886590	148886696	148886598	148886598	Frame_Shift_Del	A	-	p.I283fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF37	ENST00000333677.6	chr5	148980670:148980794:148989110:148989258:148996129:148996329,	148989111	148989258	148989122	148989122	Frame_Shift_Del	C	-	p.L108fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF37	ENST00000333677.6	chr5	148998504:148998605:148999916:149000027:149001295:149001430,	148999917	149000027	148999988	148999988	Frame_Shift_Del	T	-	p.N322fs
LIHC	TCGA-G3-A3CJ-01	CAMK2A	ENST00000351010.6,ENST00000398376.3,ENST00000348628.6	chr5	149607754:149607849:149610867:149610943:149618262:149618311,	149610868	149610943	149610921	149610921	Frame_Shift_Del	T	-	p.K352fs
LIHC	TCGA-G3-A3CJ-01	TCOF1	ENST00000377797.3,ENST00000515035.1,ENST00000513346.1,ENST00000451292.1,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149751568:149751799:149753736:149753949:149754179:149754374,	149753737	149753949	149753750	149753750	Frame_Shift_Del	A	-	p.E295fs
LIHC	TCGA-G3-A3CJ-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000427724.2	chr5	149772270:149772353:149772934:149773115:149775844:149776405,	149772935	149773115	149772957	149772957	Frame_Shift_Del	C	-	p.T1245fs
LIHC	TCGA-G3-A3CJ-01	DCTN4	ENST00000447998.2,ENST00000446090.2,ENST00000424236.1	chr5	150095126:150095224:150097837:150097945:150099277:150099332,	150097838	150097945	150097867	150097867	Frame_Shift_Del	C	-	p.D348fs
LIHC	TCGA-G3-A3CJ-01	TNIP1	ENST00000315050.7,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000521591.1	chr5	150410249:150410308:150411847:150411944:150414562:150414628,150410249:150410308:150411847:150411944:150413168:150413360,	150411848	150411944	150411874	150411874	Frame_Shift_Del	G	-	p.P618fs
LIHC	TCGA-G3-A3CJ-01	TNIP1	ENST00000315050.7,ENST00000518977.1,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150411847:150411944:150413168:150413360:150414562:150414628,	150413169	150413360	150413203	150413203	Frame_Shift_Del	G	-	p.P584fs
LIHC	TCGA-G3-A3CJ-01	TNIP1	ENST00000315050.7,ENST00000518977.1,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150411847:150411944:150413168:150413360:150414562:150414628,	150413169	150413360	150413286	150413286	Frame_Shift_Del	G	-	p.P554fs
LIHC	TCGA-G3-A3CJ-01	TNIP1	ENST00000315050.7,ENST00000518977.1,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150411847:150411944:150413168:150413360:150414562:150414628,	150413169	150413360	150413330	150413330	Frame_Shift_Del	G	-	p.H540fs
LIHC	TCGA-G3-A3CJ-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922940	150922940	Frame_Shift_Del	G	-	p.P2583fs
LIHC	TCGA-G3-A3CJ-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150925714	150925714	Frame_Shift_Del	G	-	p.P1658fs
LIHC	TCGA-G3-A3CJ-01	GRIA1	ENST00000520353.1	chr5	152869827:152870009:152870488:152870530:152873487:152873625,	152870489	152870530	152870511	152870511	Frame_Shift_Del	C	-	p.F21fs
LIHC	TCGA-G3-A3CJ-01	GALNT10	ENST00000425427.2,ENST00000519571.1,ENST00000297107.6,ENST00000521781.1	chr5	153677500:153677639:153709131:153709298:153755836:153755927,	153709132	153709298	153709209	153709209	Frame_Shift_Del	C	-	p.S160fs
LIHC	TCGA-G3-A3CJ-01	FAXDC2	ENST00000518651.1	chr5	154203120:154203152:154210360:154210482:154214402:154214494,154203120:154203152:154210360:154210482:154214184:154214288,154204043:154204117:154210360:154210482:154214184:154214288,	154210361	154210482	154210446	154210446	Frame_Shift_Del	A	-	p.F94fs
LIHC	TCGA-G3-A3CJ-01	FAXDC2	ENST00000524363.1	chr5	154210449:154210482:154214184:154214288:154214402:154214494,154203120:154203152:154214184:154214288:154214402:154214494,	154214185	154214288	154214268	154214268	Frame_Shift_Del	C	-	p.G54fs
LIHC	TCGA-G3-A3CJ-01	GEMIN5	ENST00000285873.7	chr5	154275651:154275903:154277999:154278210:154278750:154278870,	154278000	154278210	154278160	154278160	Frame_Shift_Del	T	-	p.K1062fs
LIHC	TCGA-G3-A3CJ-01	GEMIN5	ENST00000285873.7	chr5	154278750:154278870:154280898:154281046:154282098:154282236,	154280899	154281046	154280903	154280903	Frame_Shift_Del	A	-	p.Y1004fs
LIHC	TCGA-G3-A3CJ-01	GEMIN5	ENST00000285873.7	chr5	154284922:154285036:154287150:154287378:154291286:154291458,	154287151	154287378	154287309	154287309	Frame_Shift_Del	T	-	p.K746fs
LIHC	TCGA-G3-A3CJ-01	GEMIN5	ENST00000285873.7	chr5	154284922:154285036:154287150:154287378:154291286:154291458,	154287151	154287378	154287350	154287350	Frame_Shift_Del	T	-	p.K732fs
LIHC	TCGA-G3-A3CJ-01	TIMD4	ENST00000274532.2	chr5	156349109:156349227:156353273:156353323:156375426:156375510,	156353274	156353323	156353282	156353282	Frame_Shift_Del	T	-	p.T296fs
LIHC	TCGA-G3-A3CJ-01	HAVCR2	ENST00000521665.1,ENST00000524219.1,ENST00000307851.4	chr5	156525868:156525912:156531676:156531760:156533637:156533973,	156531677	156531760	156531693	156531693	Frame_Shift_Del	G	-	p.T154fs
LIHC	TCGA-G3-A3CJ-01	ADAM19	ENST00000517374.1	chr5	156904311:156904743:156908798:156908951:156915272:156915497,	156908799	156908951	156908800	156908800	Frame_Shift_Del	T	-	p.K901fs
LIHC	TCGA-G3-A3CJ-01	SOX30	ENST00000265007.6,ENST00000519442.1	chr5	157053182:157053729:157065237:157065730:157073644:157073824,	157065238	157065730	157065458	157065458	Frame_Shift_Del	G	-	p.H554fs
LIHC	TCGA-G3-A3CJ-01	EBF1	ENST00000519739.1,ENST00000313708.6,ENST00000519890.1,ENST00000522192.1,ENST00000518836.1,ENST00000380654.4	chr5	158134986:158135181:158139161:158139341:158139977:158140155,	158139162	158139341	158139169	158139169	Frame_Shift_Del	G	-	p.P514fs
LIHC	TCGA-G3-A3CJ-01	RNF145	ENST00000274542.2,ENST00000521606.2,ENST00000520638.1,ENST00000518802.1,ENST00000519865.1,ENST00000424310.2	chr5	158603639:158603875:158608967:158609059:158621723:158621832,	158608968	158609059	158609032	158609032	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-G3-A3CJ-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630583	158630583	Frame_Shift_Del	G	-	p.L15fs
LIHC	TCGA-G3-A3CJ-01	CCNJL	ENST00000541762.1,ENST00000257536.7,ENST00000519673.1	chr5	159682555:159682715:159686475:159686778:159707531:159707745,	159686476	159686778	159686536	159686536	Frame_Shift_Del	G	-	p.R223fs
LIHC	TCGA-G3-A3CJ-01	ATP10B	ENST00000327245.5	chr5	160059135:160059374:160061360:160061613:160063188:160063316,	160061361	160061613	160061602	160061602	Frame_Shift_Del	G	-	p.P380fs
LIHC	TCGA-G3-A3CJ-01	ATP10B	ENST00000326831.3	chr5	160076177:160076263:160097469:160097674:160111841:160112392,	160097470	160097674	160097568	160097568	Frame_Shift_Del	A	-	p.S194fs
LIHC	TCGA-G3-A3CJ-01	ATP10B	ENST00000326831.3	chr5	160076177:160076263:160097469:160097674:160111841:160112392,	160097470	160097674	160097627	160097627	Frame_Shift_Del	C	-	p.G173fs
LIHC	TCGA-G3-A3CJ-01	HMMR	ENST00000393915.4,ENST00000353866.3,ENST00000358715.3,ENST00000432118.2	chr5	162902463:162902678:162905689:162905806:162909647:162909794,	162905690	162905806	162905737	162905737	Frame_Shift_Del	C	-	p.T324fs
LIHC	TCGA-G3-A3CJ-01	TENM2	ENST00000518659.1,ENST00000519204.1,ENST00000545108.1,ENST00000403607.2	chr5	167419948:167420187:167474431:167474554:167489064:167489270,	167474432	167474554	167474532	167474532	Frame_Shift_Del	A	-	p.A308fs
LIHC	TCGA-G3-A3CJ-01	WWC1	ENST00000521089.1,ENST00000265293.4,ENST00000393895.3	chr5	167826492:167826572:167833202:167833332:167835511:167835613,	167833203	167833332	167833275	167833275	Frame_Shift_Del	A	-	p.T221fs
LIHC	TCGA-G3-A3CJ-01	SLIT3	ENST00000332966.8,ENST00000519560.1,ENST00000404867.3	chr5	168098202:168098488:168100181:168100336:168110970:168111101,	168100182	168100336	168100194	168100194	Frame_Shift_Del	G	-	p.L1277fs
LIHC	TCGA-G3-A3CJ-01	KCNMB1	ENST00000521859.1	chr5	169810682:169810854:169812317:169812475:169816262:169816638,	169812318	169812475	169812403	169812403	Frame_Shift_Del	G	-	p.L17fs
LIHC	TCGA-G3-A3CJ-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170341170:170341244:170343468:170343588:170345716:170345863,	170343469	170343588	170343506	170343506	Frame_Shift_Del	G	-	p.R291fs
LIHC	TCGA-G3-A3CJ-01	RANBP17	ENST00000519949.1,ENST00000519256.1,ENST00000520864.1,ENST00000522380.2,ENST00000389118.4,ENST00000522533.1,ENST00000523189.1,ENST00000522066.1	chr5	170351360:170351554:170380600:170380706:170395245:170395381,	170380601	170380706	170380653	170380653	Frame_Shift_Del	A	-	p.L507fs
LIHC	TCGA-G3-A3CJ-01	FBXW11	ENST00000296933.6,ENST00000523843.1,ENST00000393802.2,ENST00000522376.1,ENST00000265094.5,ENST00000425623.2	chr5	171297751:171297862:171299875:171299994:171303288:171303295,	171299876	171299994	171299939	171299939	Frame_Shift_Del	C	-	p.G392fs
LIHC	TCGA-G3-A3CJ-01	FBXW11	ENST00000519693.1	chr5	171326950:171327104:171337575:171337801:171433461:171433552,171326950:171327104:171337575:171337801:171423893:171423991,	171337576	171337801	171337736	171337736	Frame_Shift_Del	T	-	p.K58fs
LIHC	TCGA-G3-A3CJ-01	FBXW11	ENST00000523843.1,ENST00000425623.2	chr5	171337737:171337801:171341346:171341409:171384600:171384702,171337737:171337801:171341346:171341409:171423893:171423991,	171341347	171341409	171341369	171341369	Frame_Shift_Del	G	-	p.P29fs
LIHC	TCGA-G3-A3CJ-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171789738:171789873:171800793:171800819:171809039:171809131,	171800794	171800819	171800802	171800802	Frame_Shift_Del	T	-	p.K141fs
LIHC	TCGA-G3-A3CJ-01	CREBRF	ENST00000520464.1,ENST00000296953.2,ENST00000540014.1	chr5	172513503:172513629:172517317:172518404:172535626:172535821,	172517318	172518404	172517705	172517705	Frame_Shift_Del	A	-	p.K176fs
LIHC	TCGA-G3-A3CJ-01	BOD1	ENST00000471339.1	chr5	173035062:173035295:173040133:173040258:173043202:173043361,173036580:173036673:173040133:173040258:173043202:173043361,	173040134	173040258	173040136	173040136	Frame_Shift_Del	A	-	p.V120fs
LIHC	TCGA-G3-A3CJ-01	THOC3	ENST00000265097.4,ENST00000511062.1,ENST00000514250.1,ENST00000510300.1,ENST00000513482.1	chr5	175388422:175388437:175391953:175392158:175394113:175394270,	175391954	175392158	175392156	175392156	Frame_Shift_Del	C	-	p.E143fs
LIHC	TCGA-G3-A3CJ-01	SIMC1	ENST00000429602.2,ENST00000443967.1	chr5	175665509:175665640:175722032:175722265:175723253:175723323,175716656:175717958:175722032:175722265:175723253:175723323,	175722033	175722265	175722043	175722043	Frame_Shift_Del	A	-	p.Q462fs
LIHC	TCGA-G3-A3CJ-01	FAF2	ENST00000261942.6	chr5	175925914:175926086:175927003:175927147:175933768:175934514,	175927004	175927147	175927043	175927043	Frame_Shift_Del	C	-	p.P352fs
LIHC	TCGA-G3-A3CJ-01	CDHR2	ENST00000261944.5,ENST00000510636.1,ENST00000506348.1	chr5	176004637:176004799:176005034:176005096:176005365:176005609,	176005035	176005096	176005060	176005060	Frame_Shift_Del	G	-	p.W513fs
LIHC	TCGA-G3-A3CJ-01	TSPAN17	ENST00000310032.8,ENST00000405525.2,ENST00000504168.1,ENST00000503045.1,ENST00000515708.1,ENST00000508164.1,ENST00000507471.1	chr5	176079812:176079914:176081895:176082021:176083078:176083126,	176081896	176082021	176081919	176081919	Frame_Shift_Del	C	-	p.G160fs
LIHC	TCGA-G3-A3CJ-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000511320.1	chr5	176385093:176385155:176395555:176396292:176396601:176396707,	176395556	176396292	176395954	176395954	Frame_Shift_Del	G	-	p.Q268fs
LIHC	TCGA-G3-A3CJ-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176637191	176637191	Frame_Shift_Del	T	-	p.A597fs
LIHC	TCGA-G3-A3CJ-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176683951:176684152:176686989:176687169:176694562:176694719,	176686990	176687169	176687040	176687040	Frame_Shift_Del	T	-	p.F1673fs
LIHC	TCGA-G3-A3CJ-01	RGS14	ENST00000503110.1,ENST00000408923.3,ENST00000511890.1,ENST00000514713.1,ENST00000512490.1	chr5	176794414:176794558:176794714:176794826:176795157:176795267,	176794715	176794826	176794793	176794793	Frame_Shift_Del	G	-	p.G237fs
LIHC	TCGA-G3-A3CJ-01	RGS14	ENST00000511890.1,ENST00000425155.2	chr5	176795157:176795267:176795717:176795921:176797588:176797665,	176795718	176795921	176795826	176795826	Frame_Shift_Del	C	-	p.P320fs
LIHC	TCGA-G3-A3CJ-01	DOK3	ENST00000312943.6,ENST00000377112.4,ENST00000500323.2	chr5	176929088:176930393:176931743:176931916:176932011:176932111,	176931744	176931916	176931802	176931802	Frame_Shift_Del	C	-	p.G196fs
LIHC	TCGA-G3-A3CJ-01	FAM193B	ENST00000443375.2,ENST00000524677.1	chr5	176952197:176952206:176958282:176958522:176959443:176959534,	176958283	176958522	176958425	176958425	Frame_Shift_Del	C	-	p.G4fs
LIHC	TCGA-G3-A3CJ-01	FAM193B	ENST00000510479.1	chr5	176959443:176959642:176963358:176963487:176964873:176965020,	176963359	176963487	176963464	176963464	Frame_Shift_Del	G	-	p.P212fs
LIHC	TCGA-G3-A3CJ-01	FAM193B	ENST00000329540.5,ENST00000443375.2,ENST00000506955.1,ENST00000514747.1	chr5	176959443:176959642:176963358:176963746:176964873:176965020,	176963359	176963746	176963464	176963464	Frame_Shift_Del	G	-	p.P212fs
LIHC	TCGA-G3-A3CJ-01	PHYKPL	ENST00000493197.1,ENST00000476487.1,ENST00000308158.5,ENST00000489262.1	chr5	177641796:177641886:177649355:177649581:177649852:177649935,177642276:177642431:177649355:177649581:177649852:177649935,	177649356	177649581	177649482	177649482	Frame_Shift_Del	T	-	p.K267fs
LIHC	TCGA-G3-A3CJ-01	PHYKPL	ENST00000506045.1	chr5	177642276:177642431:177649355:177649546:177649852:177649935,	177649356	177649546	177649482	177649482	Frame_Shift_Del	T	-	p.K267fs
LIHC	TCGA-G3-A3CJ-01	PHYKPL	ENST00000481436.1,ENST00000474052.1	chr5	177642276:177642431:177649355:177649493:177649852:177649935,	177649356	177649493	177649482	177649482	Frame_Shift_Del	T	-	p.K267fs
LIHC	TCGA-G3-A3CJ-01	COL23A1	ENST00000390654.3	chr5	177673426:177673454:177674526:177674553:177674775:177674832,	177674527	177674553	177674530	177674530	Frame_Shift_Del	G	-	p.P431fs
LIHC	TCGA-G3-A3CJ-01	RUFY1	ENST00000508609.1	chr5	178996302:178996426:179004075:179004137:179007947:179008013,178996302:178996426:179004075:179004137:179012796:179012866,	179004076	179004137	179004090	179004090	Frame_Shift_Del	T	-	p.D281fs
LIHC	TCGA-G3-A3CJ-01	HNRNPH1	ENST00000511300.2,ENST00000510678.1,ENST00000523449.1,ENST00000510411.1,ENST00000514332.1,ENST00000502904.1,ENST00000356731.5,ENST00000442819.2,ENST00000393432.4,ENST00000519033.1,ENST00000502632.1	chr5	179041890:179041960:179042546:179042596:179043126:179043181,	179042547	179042596	179042565	179042565	Frame_Shift_Del	A	-	p.F444fs
LIHC	TCGA-G3-A3CJ-01	HNRNPH1	ENST00000506721.1,ENST00000510431.1,ENST00000515158.1,ENST00000503105.1,ENST00000510678.1,ENST00000521116.1,ENST00000510411.1,ENST00000513972.1,ENST00000329433.6,ENST00000504348.1,ENST00000356731.5,ENST00000442819.2,ENST00000513225.1,ENST00000519707.1,ENST00000508103.1,ENST00000393432.4,ENST00000514731.1,ENST00000505811.1,ENST00000524180.1	chr5	179047943:179048036:179048242:179048398:179050037:179050165,	179048243	179048398	179048277	179048277	Frame_Shift_Del	T	-	p.K73fs
LIHC	TCGA-G3-A3CJ-01	HNRNPH1	ENST00000521116.1	chr5	179048371:179048398:179050037:179050165:179061065:179061158,	179050038	179050165	179050085	179050085	Frame_Shift_Del	C	-	p.G17fs
LIHC	TCGA-G3-A3CJ-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000502673.1,ENST00000512607.2,ENST00000452673.2	chr5	179135978:179136060:179136873:179137066:179143105:179143202,	179136874	179137066	179136964	179136964	Frame_Shift_Del	A	-	p.K207fs
LIHC	TCGA-G3-A3CJ-01	CANX	ENST00000503126.1	chr5	179135978:179136060:179136919:179137066:179143105:179143202,	179136920	179137066	179136964	179136964	Frame_Shift_Del	A	-	p.K207fs
LIHC	TCGA-G3-A3CJ-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000512607.2,ENST00000452673.2	chr5	179147404:179147561:179149804:179150020:179150660:179150780,	179149805	179150020	179149986	179149986	Frame_Shift_Del	G	-	p.W455fs
LIHC	TCGA-G3-A3CJ-01	GFPT2	ENST00000253778.8	chr5	179729422:179729584:179731771:179731939:179734175:179734303,	179731772	179731939	179731873	179731873	Frame_Shift_Del	G	-	p.L581fs
LIHC	TCGA-G3-A3CJ-01	CNOT6	ENST00000502447.1,ENST00000261951.4	chr5	179921706:179921763:179956274:179956388:179976930:179976995,	179956275	179956388	179956348	179956348	Frame_Shift_Del	A	-	p.A24fs
LIHC	TCGA-G3-A3CJ-01	BTNL8	ENST00000508408.1,ENST00000340184.4	chr5	180326273:180326359:180335585:180335933:180338338:180338614,	180335586	180335933	180335612	180335612	Frame_Shift_Del	A	-	p.K26fs
LIHC	TCGA-G3-A3CJ-01	IRF4	ENST00000493114.1	chr6	391767:391809:393097:393368:394820:395007,	393098	393368	393263	393263	Frame_Shift_Del	C	-	p.Y37fs
LIHC	TCGA-G3-A3CJ-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	532468:532610:549174:549291:553853:553920,	549175	549291	549183	549183	Frame_Shift_Del	T	-	p.I744fs
LIHC	TCGA-G3-A3CJ-01	EXOC2	ENST00000448181.3,ENST00000230449.4	chr6	564863:564929:572519:572644:576756:576882,	572520	572644	572592	572592	Frame_Shift_Del	T	-	p.K457fs
LIHC	TCGA-G3-A3CJ-01	WRNIP1	ENST00000380771.4	chr6	2766285:2766678:2768924:2769116:2770353:2770595,2766285:2766678:2768924:2769116:2770428:2770595,	2768925	2769116	2768976	2768976	Frame_Shift_Del	T	-	p.F72fs
LIHC	TCGA-G3-A3CJ-01	SERPINB6	ENST00000380539.1	chr6	2955757:2955904:2959401:2959576:2971724:2971819,2955757:2955904:2959401:2959576:2971350:2971440,2955757:2955904:2959401:2959576:2971766:2972090,2955757:2955904:2959401:2959576:2962127:2962342,2955757:2955904:2959401:2959576:2971481:2971539,	2959402	2959576	2959404	2959404	Frame_Shift_Del	G	-	p.Q55fs
LIHC	TCGA-G3-A3CJ-01	SERPINB6	ENST00000380539.1	chr6	2955757:2955904:2959401:2959576:2971724:2971819,2955757:2955904:2959401:2959576:2971350:2971440,2955757:2955904:2959401:2959576:2971766:2972090,2955757:2955904:2959401:2959576:2962127:2962342,2955757:2955904:2959401:2959576:2971481:2971539,	2959402	2959576	2959430	2959430	Frame_Shift_Del	T	-	p.K46fs
LIHC	TCGA-G3-A3CJ-01	SERPINB6	ENST00000380539.1	chr6	2955757:2955904:2959401:2959576:2971724:2971819,2955757:2955904:2959401:2959576:2971350:2971440,2955757:2955904:2959401:2959576:2971766:2972090,2955757:2955904:2959401:2959576:2962127:2962342,2955757:2955904:2959401:2959576:2971481:2971539,	2959402	2959576	2959434	2959434	Frame_Shift_Del	C	-	p.A45fs
LIHC	TCGA-G3-A3CJ-01	RIPK1	ENST00000259808.4	chr6	3068657:3068895:3076997:3077221:3078012:3078169,	3076998	3077221	3077139	3077139	Frame_Shift_Del	T	-	p.F28fs
LIHC	TCGA-G3-A3CJ-01	RIPK1	ENST00000259808.4	chr6	3068657:3068895:3076997:3077221:3078012:3078169,	3076998	3077221	3077190	3077190	Frame_Shift_Del	A	-	p.K45fs
LIHC	TCGA-G3-A3CJ-01	RIPK1	ENST00000380409.2,ENST00000259808.4,ENST00000479389.1,ENST00000541791.1	chr6	3085492:3085642:3089814:3089891:3104458:3104549,	3089815	3089891	3089824	3089824	Frame_Shift_Del	A	-	p.E283fs
LIHC	TCGA-G3-A3CJ-01	RIPK1	ENST00000380409.2,ENST00000259808.4,ENST00000479389.1,ENST00000541791.1	chr6	3085492:3085642:3089814:3089891:3104458:3104549,	3089815	3089891	3089837	3089837	Frame_Shift_Del	T	-	p.P287fs
LIHC	TCGA-G3-A3CJ-01	BPHL	ENST00000380368.2,ENST00000424847.2,ENST00000380375.3,ENST00000430655.2	chr6	3118961:3119081:3119518:3119746:3123890:3123994,	3119519	3119746	3119734	3119734	Frame_Shift_Del	C	-	p.S15fs
LIHC	TCGA-G3-A3CJ-01	PRPF4B	ENST00000538861.1,ENST00000337659.6,ENST00000481109.1,ENST00000480058.1	chr6	4037652:4037804:4041005:4041161:4042720:4042802,	4041006	4041161	4041103	4041103	Frame_Shift_Del	T	-	p.F504fs
LIHC	TCGA-G3-A3CJ-01	PRPF4B	ENST00000538861.1,ENST00000337659.6,ENST00000481109.1,ENST00000480058.1	chr6	4052953:4053107:4056554:4056669:4057269:4057421,	4056555	4056669	4056630	4056630	Frame_Shift_Del	C	-	p.P848fs
LIHC	TCGA-G3-A3CJ-01	PRPF4B	ENST00000538861.1,ENST00000337659.6,ENST00000481109.1,ENST00000480058.1	chr6	4052953:4053107:4056554:4056669:4057269:4057421,	4056555	4056669	4056648	4056648	Frame_Shift_Del	T	-	p.F854fs
LIHC	TCGA-G3-A3CJ-01	PRPF4B	ENST00000494674.1	chr6	4058961:4059048:4060646:4060920:4061248:4061381,	4060647	4060920	4060840	4060840	Frame_Shift_Del	A	-	p.E1005fs
LIHC	TCGA-G3-A3CJ-01	PRPF4B	ENST00000481109.1	chr6	4058961:4059048:4060646:4060878:4061248:4061381,	4060647	4060878	4060840	4060840	Frame_Shift_Del	A	-	p.E1005fs
LIHC	TCGA-G3-A3CJ-01	CDYL	ENST00000397588.3	chr6	4776675:4777041:4891946:4892613:4935748:4936005,	4891947	4892613	4891977	4891977	Frame_Shift_Del	A	-	p.K74fs
LIHC	TCGA-G3-A3CJ-01	RPP40	ENST00000380051.2,ENST00000464646.1,ENST00000319533.5	chr6	4996455:4996654:4998949:4999075:5000042:5000138,	4998950	4999075	4998967	4998967	Frame_Shift_Del	A	-	p.L181fs
LIHC	TCGA-G3-A3CJ-01	FARS2	ENST00000274680.4	chr6	5261758:5261893:5368782:5369415:5404774:5404934,	5368783	5369415	5369030	5369030	Frame_Shift_Del	G	-	p.R76fs
LIHC	TCGA-G3-A3CJ-01	FARS2	ENST00000274680.4,ENST00000324331.6	chr6	5368782:5369415:5404774:5404934:5431273:5431405,	5404775	5404934	5404923	5404923	Frame_Shift_Del	T	-	p.L254fs
LIHC	TCGA-G3-A3CJ-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229773	7229773	Frame_Shift_Del	C	-	p.P482fs
LIHC	TCGA-G3-A3CJ-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7231656	7231656	Frame_Shift_Del	C	-	p.V1108fs
LIHC	TCGA-G3-A3CJ-01	RREB1	ENST00000334984.6	chr6	7229229:7232140:7240670:7240835:7246656:7247454,7229229:7232140:7240670:7240835:7248743:7249457,	7240671	7240835	7240709	7240709	Frame_Shift_Del	T	-	p.F1283fs
LIHC	TCGA-G3-A3CJ-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580157	7580157	Frame_Shift_Del	A	-	p.E1245fs
LIHC	TCGA-G3-A3CJ-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580721	7580721	Frame_Shift_Del	A	-	p.Q1433fs
LIHC	TCGA-G3-A3CJ-01	SLC35B3	ENST00000379660.4	chr6	8417116:8417228:8417634:8417727:8419812:8419877,	8417635	8417727	8417690	8417690	Frame_Shift_Del	A	-	p.L274fs
LIHC	TCGA-G3-A3CJ-01	SLC35B3	ENST00000379660.4	chr6	8417116:8417228:8417634:8417727:8419812:8419877,	8417635	8417727	8417701	8417701	Frame_Shift_Del	A	-	p.F269fs
LIHC	TCGA-G3-A3CJ-01	TFAP2A	ENST00000478375.1,ENST00000482890.1,ENST00000466073.1,ENST00000379604.2,ENST00000379613.3	chr6	10407025:10407077:10410133:10410568:10415173:10415233,	10410134	10410568	10410467	10410467	Frame_Shift_Del	G	-	p.P51fs
LIHC	TCGA-G3-A3CJ-01	HIVEP1	ENST00000487103.1,ENST00000478545.1,ENST00000379388.2,ENST00000491710.1	chr6	12015819:12015901:12089416:12089470:12120122:12120167,	12089417	12089470	12089463	12089463	Frame_Shift_Del	A	-	p.S29fs
LIHC	TCGA-G3-A3CJ-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120663	12120663	Frame_Shift_Del	A	-	p.Q212fs
LIHC	TCGA-G3-A3CJ-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12122481	12122481	Frame_Shift_Del	A	-	p.E818fs
LIHC	TCGA-G3-A3CJ-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12122705	12122705	Frame_Shift_Del	C	-	p.P893fs
LIHC	TCGA-G3-A3CJ-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12124913	12124913	Frame_Shift_Del	A	-	p.K1629fs
LIHC	TCGA-G3-A3CJ-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125852	12125852	Frame_Shift_Del	T	-	p.F1942fs
LIHC	TCGA-G3-A3CJ-01	PHACTR1	ENST00000457702.2,ENST00000415087.1,ENST00000332995.7,ENST00000379350.1	chr6	13206046:13206368:13228047:13228295:13230268:13230425,	13228048	13228295	13228091	13228091	Frame_Shift_Del	G	-	p.G344fs
LIHC	TCGA-G3-A3CJ-01	NOL7	ENST00000474485.1,ENST00000451315.2	chr6	13618001:13618033:13618289:13618371:13620439:13620561,	13618290	13618371	13618353	13618353	Frame_Shift_Del	A	-	p.Q161fs
LIHC	TCGA-G3-A3CJ-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496488	15496488	Frame_Shift_Del	G	-	p.K344fs
LIHC	TCGA-G3-A3CJ-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327002	16327002	Frame_Shift_Del	G	-	p.Q514fs
LIHC	TCGA-G3-A3CJ-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327823	16327823	Frame_Shift_Del	G	-	p.P241fs
LIHC	TCGA-G3-A3CJ-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16328290	16328290	Frame_Shift_Del	C	-	p.G84fs
LIHC	TCGA-G3-A3CJ-01	CAP2	ENST00000476263.1,ENST00000465994.1,ENST00000489374.1,ENST00000229922.2	chr6	17421785:17421907:17426820:17426921:17463226:17463304,	17426821	17426921	17426858	17426858	Frame_Shift_Del	G	-	p.M53fs
LIHC	TCGA-G3-A3CJ-01	CAP2	ENST00000476263.1,ENST00000465994.1,ENST00000489374.1,ENST00000229922.2	chr6	17421785:17421907:17426820:17426921:17463226:17463304,	17426821	17426921	17426877	17426877	Frame_Shift_Del	T	-	p.F60fs
LIHC	TCGA-G3-A3CJ-01	CAP2	ENST00000489374.1	chr6	17426820:17426921:17463226:17463304:17507399:17507543,17426820:17426921:17463226:17463304:17539499:17539521,	17463227	17463304	17463231	17463231	Frame_Shift_Del	A	-	p.E76fs
LIHC	TCGA-G3-A3CJ-01	CAP2	ENST00000489374.1	chr6	17514079:17514185:17539499:17539689:17541203:17541379,17507399:17507543:17539499:17539689:17541203:17541379,17463226:17463304:17539499:17539689:17541203:17541379,	17539500	17539689	17539587	17539587	Frame_Shift_Del	G	-	p.G242fs
LIHC	TCGA-G3-A3CJ-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17662248:17662301:17665469:17665616:17669205:17669259,	17665470	17665616	17665541	17665541	Frame_Shift_Del	A	-	p.Y382fs
LIHC	TCGA-G3-A3CJ-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17764457	17764457	Frame_Shift_Del	T	-	p.T1720fs
LIHC	TCGA-G3-A3CJ-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17764728	17764728	Frame_Shift_Del	T	-	p.K1629fs
LIHC	TCGA-G3-A3CJ-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000378826.2	chr6	17764385:17765177:17772138:17772290:17773708:17773814,	17772139	17772290	17772247	17772247	Frame_Shift_Del	A	-	p.F1443fs
LIHC	TCGA-G3-A3CJ-01	TPMT	ENST00000309983.4	chr6	18134034:18134120:18139193:18139268:18139895:18139948,	18139194	18139268	18139250	18139250	Frame_Shift_Del	A	-	p.F146fs
LIHC	TCGA-G3-A3CJ-01	KDM1B	ENST00000388870.2,ENST00000297792.5,ENST00000397244.1	chr6	18163065:18163155:18166497:18166609:18171593:18171710,	18166498	18166609	18166532	18166532	Frame_Shift_Del	A	-	p.K115fs
LIHC	TCGA-G3-A3CJ-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000244776.7	chr6	18225841:18225961:18226404:18226473:18236682:18236827,	18226405	18226473	18226419	18226419	Frame_Shift_Del	T	-	p.T369fs
LIHC	TCGA-G3-A3CJ-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18249928	18249928	Frame_Shift_Del	T	-	p.N239fs
LIHC	TCGA-G3-A3CJ-01	DEK	ENST00000505224.1,ENST00000397239.3,ENST00000512145.1,ENST00000244776.7	chr6	18237611:18237747:18249881:18250070:18255961:18256081,	18249882	18250070	18249934	18249934	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-G3-A3CJ-01	DEK	ENST00000397239.3,ENST00000515742.1	chr6	18258183:18258293:18258534:18258636:18264073:18264227,	18258535	18258636	18258587	18258587	Frame_Shift_Del	C	-	p.R65fs
LIHC	TCGA-G3-A3CJ-01	CDKAL1	ENST00000274695.4,ENST00000378610.1	chr6	21000457:21000603:21065278:21065459:21108631:21108694,	21065279	21065459	21065288	21065288	Frame_Shift_Del	A	-	p.G355fs
LIHC	TCGA-G3-A3CJ-01	MRS2	ENST00000274747.7,ENST00000543597.1,ENST00000443868.2,ENST00000535061.1,ENST00000378386.3	chr6	24418688:24418806:24423164:24423278:24423811:24424067,	24423165	24423278	24423175	24423175	Frame_Shift_Del	T	-	p.I373fs
LIHC	TCGA-G3-A3CJ-01	ALDH5A1	ENST00000546278.1,ENST00000491546.1,ENST00000357578.3	chr6	24505096:24505213:24515394:24515538:24520628:24520772,	24515395	24515538	24515400	24515400	Frame_Shift_Del	A	-	p.A244fs
LIHC	TCGA-G3-A3CJ-01	KIAA0319	ENST00000543707.1,ENST00000378214.3,ENST00000430948.2,ENST00000535378.1	chr6	24547255:24547571:24551661:24551753:24554768:24554859,	24551662	24551753	24551746	24551746	Frame_Shift_Del	T	-	p.R977fs
LIHC	TCGA-G3-A3CJ-01	KIAA0319	ENST00000543707.1	chr6	24596100:24596846:24601276:24601436:24645963:24646383,24596664:24596846:24601276:24601436:24645854:24646249,	24601277	24601436	24601320	24601320	Frame_Shift_Del	G	-	p.P4fs
LIHC	TCGA-G3-A3CJ-01	HFE	ENST00000309234.6,ENST00000357618.5,ENST00000397022.3	chr6	26087666:26087744:26091541:26091817:26092912:26093188,26091137:26091332:26091541:26091817:26092954:26093188,26091137:26091332:26091541:26091817:26092912:26093188,	26091542	26091817	26091683	26091683	Frame_Shift_Del	G	-	p.R161fs
LIHC	TCGA-G3-A3CJ-01	HFE	ENST00000483782.1	chr6	26087666:26087744:26091068:26091817:26092912:26093188,	26091069	26091817	26091683	26091683	Frame_Shift_Del	G	-	p.R161fs
LIHC	TCGA-G3-A3CJ-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26093056	26093056	Frame_Shift_Del	A	-	p.K254fs
LIHC	TCGA-G3-A3CJ-01	BTN3A2	ENST00000532294.1	chr6	26370746:26370831:26373503:26373641:26374554:26374601,	26373504	26373641	26373620	26373620	Frame_Shift_Del	A	-	p.K316fs
LIHC	TCGA-G3-A3CJ-01	BTN3A2	ENST00000396934.3,ENST00000356386.2,ENST00000524682.1,ENST00000396948.1,ENST00000508906.2,ENST00000377708.2,ENST00000527422.1	chr6	26373503:26373524:26373614:26373641:26374554:26374601,	26373615	26373641	26373620	26373620	Frame_Shift_Del	A	-	p.K316fs
LIHC	TCGA-G3-A3CJ-01	BTN2A2	ENST00000493275.1,ENST00000469230.1,ENST00000356709.4,ENST00000416795.2	chr6	26384019:26384143:26385242:26385590:26390232:26390365,26384019:26384143:26385242:26385590:26388240:26388387,	26385243	26385590	26385259	26385259	Frame_Shift_Del	G	-	p.V37fs
LIHC	TCGA-G3-A3CJ-01	BTN3A3	ENST00000361232.3	chr6	26445931:26446213:26448475:26448676:26448955:26448982,	26448476	26448676	26448524	26448524	Frame_Shift_Del	C	-	p.T255fs
LIHC	TCGA-G3-A3CJ-01	ZSCAN23	ENST00000289788.4	chr6	28403236:28403384:28403635:28404120:28411175:28411244,	28403636	28404120	28403857	28403857	Frame_Shift_Del	G	-	p.R63fs
LIHC	TCGA-G3-A3CJ-01	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3	chr6	28887788:28888019:28889668:28889764:28890989:28891690,	28889669	28889764	28889692	28889692	Frame_Shift_Del	C	-	p.E165fs
LIHC	TCGA-G3-A3CJ-01	GABBR1	ENST00000377012.4,ENST00000376977.3,ENST00000355973.3,ENST00000377034.4,ENST00000472823.1,ENST00000477029.1,ENST00000485508.1,ENST00000494877.1,ENST00000377016.4,ENST00000491829.1	chr6	29589880:29589982:29591081:29591252:29591666:29591801,	29591082	29591252	29591137	29591137	Frame_Shift_Del	T	-	p.K303fs
LIHC	TCGA-G3-A3CJ-01	TRIM31	ENST00000485864.1,ENST00000376734.3,ENST00000540829.1	chr6	30072972:30073019:30075829:30075945:30076802:30076825,	30075830	30075945	30075837	30075837	Frame_Shift_Del	T	-	p.K292fs
LIHC	TCGA-G3-A3CJ-01	ABCF1	ENST00000441867.1,ENST00000396515.4,ENST00000376545.3	chr6	30539218:30539337:30545185:30545232:30545594:30545690,	30545186	30545232	30545224	30545224	Frame_Shift_Del	A	-	p.K39fs
LIHC	TCGA-G3-A3CJ-01	PPP1R10	ENST00000376511.2	chr6	30568176:30569435:30569712:30570468:30570622:30570736,	30569713	30570468	30569884	30569884	Frame_Shift_Del	G	-	p.H848fs
LIHC	TCGA-G3-A3CJ-01	PPP1R10	ENST00000376511.2	chr6	30568176:30569435:30569712:30570468:30570622:30570736,	30569713	30570468	30570207	30570207	Frame_Shift_Del	C	-	p.G740fs
LIHC	TCGA-G3-A3CJ-01	MRPS18B	ENST00000259873.4,ENST00000472229.1	chr6	30587485:30587583:30587697:30587766:30590608:30590675,	30587698	30587766	30587716	30587716	Frame_Shift_Del	G	-	p.G102fs
LIHC	TCGA-G3-A3CJ-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610765	30610765	Frame_Shift_Del	C	-	p.S315fs
LIHC	TCGA-G3-A3CJ-01	C6orf136	ENST00000488383.1,ENST00000376473.5	chr6	30615382:30615623:30617334:30617736:30618770:30618859,30614962:30615080:30617334:30617736:30618770:30618859,	30617335	30617736	30617368	30617368	Frame_Shift_Del	C	-	p.P217fs
LIHC	TCGA-G3-A3CJ-01	C6orf136	ENST00000488383.1,ENST00000376473.5	chr6	30615382:30615623:30617334:30617736:30618770:30618859,30614962:30615080:30617334:30617736:30618770:30618859,	30617335	30617736	30617532	30617532	Frame_Shift_Del	G	-	p.K271fs
LIHC	TCGA-G3-A3CJ-01	FLOT1	ENST00000456573.2	chr6	30708285:30708368:30708455:30708575:30708966:30709110,30708285:30708368:30708455:30708575:30709390:30709481,	30708456	30708575	30708552	30708552	Frame_Shift_Del	T	-	p.K126fs
LIHC	TCGA-G3-A3CJ-01	FLOT1	ENST00000470643.1	chr6	30708455:30708575:30708966:30709110:30709390:30709481,30708455:30708575:30708966:30709110:30709438:30709481,30708455:30708575:30708966:30709110:30709923:30709980,30708455:30708575:30708966:30709110:30709568:30709644,	30708967	30709110	30709096	30709096	Frame_Shift_Del	C	-	p.G75fs
LIHC	TCGA-G3-A3CJ-01	FLOT1	ENST00000484168.1	chr6	30708455:30708575:30708966:30709481:30709568:30709644,	30708967	30709481	30709096	30709096	Frame_Shift_Del	C	-	p.G75fs
LIHC	TCGA-G3-A3CJ-01	MUC21	ENST00000376296.3	chr6	30951494:30951796:30954013:30955458:30955776:30956414,	30954014	30955458	30954449	30954449	Frame_Shift_Del	C	-	p.T166fs
LIHC	TCGA-G3-A3CJ-01	MUC21	ENST00000376296.3	chr6	30951494:30951796:30954013:30955458:30955776:30956414,	30954014	30955458	30954613	30954613	Frame_Shift_Del	G	-	p.G221fs
LIHC	TCGA-G3-A3CJ-01	CCHCR1	ENST00000451521.2,ENST00000396263.2,ENST00000376266.5,ENST00000448162.2,ENST00000396268.3,ENST00000508683.1,ENST00000448141.2,ENST00000509552.1	chr6	31118868:31118899:31122272:31122576:31124507:31124613,	31122273	31122576	31122342	31122342	Frame_Shift_Del	A	-	p.V245fs
LIHC	TCGA-G3-A3CJ-01	PRRC2A	ENST00000376033.2,ENST00000376007.4,ENST00000487839.1	chr6	31603743:31603826:31603985:31604196:31604286:31604385,	31603986	31604196	31604005	31604005	Frame_Shift_Del	C	-	p.P1883fs
LIHC	TCGA-G3-A3CJ-01	VWA7	ENST00000447450.1,ENST00000375688.4,ENST00000467576.1,ENST00000375686.3	chr6	31737451:31737568:31737777:31737890:31740730:31740784,	31737778	31737890	31737815	31737815	Frame_Shift_Del	C	-	p.G389fs
LIHC	TCGA-G3-A3CJ-01	VARS	ENST00000375663.3	chr6	31750178:31750220:31750306:31750410:31750497:31750622,	31750307	31750410	31750396	31750396	Frame_Shift_Del	A	-	p.F634fs
LIHC	TCGA-G3-A3CJ-01	SLC44A4	ENST00000544672.1,ENST00000375562.4,ENST00000229729.6	chr6	31831353:31831525:31832428:31832513:31832592:31832687,	31832429	31832513	31832498	31832498	Frame_Shift_Del	C	-	p.A572fs
LIHC	TCGA-G3-A3CJ-01	SLC44A4	ENST00000544672.1,ENST00000414427.1,ENST00000229729.6	chr6	31842236:31842297:31842497:31842623:31842705:31842805,	31842498	31842623	31842554	31842554	Frame_Shift_Del	C	-	p.E62fs
LIHC	TCGA-G3-A3CJ-01	EHMT2	ENST00000375528.4,ENST00000375530.4,ENST00000375537.4,ENST00000395728.3	chr6	31860470:31860511:31860602:31860687:31864039:31864281,	31860603	31860687	31860662	31860662	Frame_Shift_Del	G	-	p.P260fs
LIHC	TCGA-G3-A3CJ-01	SKIV2L	ENST00000375394.2,ENST00000474839.1,ENST00000544581.1	chr6	31928817:31928871:31928972:31929163:31929323:31929452,	31928973	31929163	31929038	31929038	Frame_Shift_Del	G	-	p.G223fs
LIHC	TCGA-G3-A3CJ-01	C4B	ENST00000425700.2,ENST00000435363.2	chr6	31994430:31994501:31994759:31994899:31995012:31995222,	31994760	31994899	31994888	31994888	Frame_Shift_Del	A	-	p.K861fs
LIHC	TCGA-G3-A3CJ-01	CYP21A2	ENST00000435122.2,ENST00000479074.1,ENST00000483041.1,ENST00000418967.2,ENST00000479730.1	chr6	32007361:32007424:32007525:32007612:32007781:32007982,	32007526	32007612	32007531	32007531	Frame_Shift_Del	C	-	p.F219fs
LIHC	TCGA-G3-A3CJ-01	CYP21A2	ENST00000435122.2,ENST00000479074.1,ENST00000483041.1,ENST00000418967.2,ENST00000479730.1	chr6	32007541:32007612:32007781:32007982:32008182:32008361,	32007782	32007982	32007790	32007790	Frame_Shift_Del	C	-	p.L249fs
LIHC	TCGA-G3-A3CJ-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32017774:32018098:32020446:32020770:32021164:32021482,	32020447	32020770	32020536	32020536	Frame_Shift_Del	C	-	p.G3009fs
LIHC	TCGA-G3-A3CJ-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32017774:32018098:32020446:32020770:32021164:32021482,	32020447	32020770	32020636	32020636	Frame_Shift_Del	G	-	p.Q2976fs
LIHC	TCGA-G3-A3CJ-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32029933:32030260:32032597:32032894:32035437:32035755,	32032598	32032894	32032740	32032740	Frame_Shift_Del	C	-	p.G2233fs
LIHC	TCGA-G3-A3CJ-01	NOTCH4	ENST00000375023.3,ENST00000474612.1	chr6	32166434:32166507:32166702:32166922:32168607:32168783,	32166703	32166922	32166916	32166916	Frame_Shift_Del	G	-	p.P1441fs
LIHC	TCGA-G3-A3CJ-01	NOTCH4	ENST00000375023.3	chr6	32180250:32180404:32180600:32180688:32180911:32180995,	32180601	32180688	32180685	32180685	Frame_Shift_Del	G	-	p.P814fs
LIHC	TCGA-G3-A3CJ-01	NOTCH4	ENST00000375023.3,ENST00000473562.1	chr6	32190287:32190583:32190781:32190863:32191632:32191834,	32190782	32190863	32190829	32190829	Frame_Shift_Del	G	-	p.A36fs
LIHC	TCGA-G3-A3CJ-01	HLA-DRB5	ENST00000374975.3	chr6	32486332:32486443:32487146:32487428:32489681:32489839,	32487147	32487428	32487268	32487268	Frame_Shift_Del	A	-	p.I177fs
LIHC	TCGA-G3-A3CJ-01	HLA-DRB1	ENST00000360004.5	chr6	32548522:32548633:32549333:32549615:32551885:32552066,	32549334	32549615	32549475	32549475	Frame_Shift_Del	T	-	p.M171fs
LIHC	TCGA-G3-A3CJ-01	HLA-DQB2	ENST00000427449.1	chr6	32724164:32724243:32726626:32726908:32729436:32729703,	32726627	32726908	32726721	32726721	Frame_Shift_Del	A	-	p.I184fs
LIHC	TCGA-G3-A3CJ-01	HLA-DQB2	ENST00000427449.1	chr6	32724164:32724243:32726626:32726908:32729436:32729703,	32726627	32726908	32726816	32726816	Frame_Shift_Del	G	-	p.Q153fs
LIHC	TCGA-G3-A3CJ-01	PSMB8	ENST00000395339.3,ENST00000374881.2,ENST00000374882.3,ENST00000484003.1	chr6	32809307:32809512:32809910:32810040:32810448:32810488,	32809911	32810040	32809957	32809957	Frame_Shift_Del	C	-	p.G160fs
LIHC	TCGA-G3-A3CJ-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32815289:32815452:32815695:32815869:32816428:32816617,	32815696	32815869	32815757	32815757	Frame_Shift_Del	C	-	p.G620fs
LIHC	TCGA-G3-A3CJ-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169107	33169107	Frame_Shift_Del	G	-	p.G30fs
LIHC	TCGA-G3-A3CJ-01	HSD17B8	ENST00000374662.3,ENST00000469186.1	chr6	33173636:33173689:33173910:33173953:33174151:33174226,	33173911	33173953	33173940	33173940	Frame_Shift_Del	G	-	p.L227fs
LIHC	TCGA-G3-A3CJ-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177402:33177563:33177691:33177907:33178934:33178964,	33177692	33177907	33177752	33177752	Frame_Shift_Del	C	-	p.D100fs
LIHC	TCGA-G3-A3CJ-01	VPS52	ENST00000482399.1,ENST00000436044.2,ENST00000478934.1,ENST00000445902.2	chr6	33231855:33231880:33232150:33232274:33232558:33232677,	33232151	33232274	33232172	33232172	Frame_Shift_Del	C	-	p.G501fs
LIHC	TCGA-G3-A3CJ-01	BAK1	ENST00000374467.3,ENST00000360661.5	chr6	33541603:33541684:33541810:33541991:33543074:33543218,	33541811	33541991	33541818	33541818	Frame_Shift_Del	C	-	p.G176fs
LIHC	TCGA-G3-A3CJ-01	SNRPC	ENST00000374018.1,ENST00000474635.1,ENST00000374017.3,ENST00000244520.5	chr6	34730371:34730480:34735684:34735774:34738067:34738172,	34735685	34735774	34735762	34735762	Frame_Shift_Del	C	-	p.P102fs
LIHC	TCGA-G3-A3CJ-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34835242:34835393:34838630:34838893:34839360:34839469,	34838631	34838893	34838727	34838727	Frame_Shift_Del	C	-	p.S1272fs
LIHC	TCGA-G3-A3CJ-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34835242:34835393:34838630:34838893:34839360:34839469,	34838631	34838893	34838851	34838851	Frame_Shift_Del	C	-	p.V1313fs
LIHC	TCGA-G3-A3CJ-01	TCP11	ENST00000507706.1	chr6	35096891:35096959:35107796:35108002:35108981:35109030,35096891:35096959:35107796:35108002:35108523:35108661,35103903:35103995:35107796:35108002:35108523:35108661,35103903:35103995:35107796:35108002:35108981:35109030,	35107797	35108002	35107835	35107835	Frame_Shift_Del	T	-	p.K4fs
LIHC	TCGA-G3-A3CJ-01	TCP11	ENST00000445851.2,ENST00000311875.5,ENST00000394696.4	chr6	35096891:35096959:35108523:35108661:35108981:35109030,35107796:35108002:35108523:35108661:35108981:35109030,35103903:35103995:35108523:35108661:35108981:35109030,	35108524	35108661	35108560	35108560	Frame_Shift_Del	G	-	p.Q43fs
LIHC	TCGA-G3-A3CJ-01	DEF6	ENST00000316637.5	chr6	35280078:35280315:35280402:35280549:35285667:35285776,	35280403	35280549	35280440	35280440	Frame_Shift_Del	G	-	p.W233fs
LIHC	TCGA-G3-A3CJ-01	TULP1	ENST00000229771.6,ENST00000448446.2	chr6	35478637:35478787:35479424:35479583:35479956:35480047,	35479425	35479583	35479439	35479439	Frame_Shift_Del	G	-	p.P112fs
LIHC	TCGA-G3-A3CJ-01	FKBP5	ENST00000540787.1,ENST00000539068.1,ENST00000357266.4,ENST00000536438.1	chr6	35547812:35547998:35554810:35554894:35558906:35558997,	35554811	35554894	35554859	35554859	Frame_Shift_Del	T	-	p.N234fs
LIHC	TCGA-G3-A3CJ-01	CLPSL2	ENST00000360454.2	chr6	35745235:35745358:35745627:35745706:35747131:35747329,	35745628	35745706	35745683	35745683	Frame_Shift_Del	C	-	p.T88fs
LIHC	TCGA-G3-A3CJ-01	SRPK1	ENST00000373825.2,ENST00000361690.3,ENST00000373822.1,ENST00000423325.2,ENST00000346162.6,ENST00000510290.1	chr6	35837443:35837678:35838057:35838271:35838710:35838732,	35838058	35838271	35838062	35838062	Frame_Shift_Del	T	-	p.K329fs
LIHC	TCGA-G3-A3CJ-01	BRPF3	ENST00000357641.6,ENST00000534400.1	chr6	36181656:36182163:36185693:36185787:36189944:36190042,	36185694	36185787	36185713	36185713	Frame_Shift_Del	A	-	p.G1003fs
LIHC	TCGA-G3-A3CJ-01	PNPLA1	ENST00000388715.3,ENST00000394571.2,ENST00000312917.5,ENST00000457797.1	chr6	36263140:36263201:36269637:36270246:36274068:36274153,	36269638	36270246	36269803	36269803	Frame_Shift_Del	G	-	p.W314fs
LIHC	TCGA-G3-A3CJ-01	KCTD20	ENST00000373731.2	chr6	36437828:36438034:36442565:36442839:36446897:36447000,	36442566	36442839	36442786	36442786	Frame_Shift_Del	T	-	p.R127fs
LIHC	TCGA-G3-A3CJ-01	KCTD20	ENST00000481911.1,ENST00000536244.1,ENST00000265344.4,ENST00000474988.1,ENST00000373731.2,ENST00000544295.1,ENST00000449081.2	chr6	36449338:36449536:36452490:36452601:36454659:36455183,	36452491	36452601	36452549	36452549	Frame_Shift_Del	A	-	p.A305fs
LIHC	TCGA-G3-A3CJ-01	C6orf89	ENST00000510325.2,ENST00000480824.2,ENST00000355190.3,ENST00000373685.1,ENST00000359359.2	chr6	36884220:36884350:36887353:36887477:36891122:36891298,	36887354	36887477	36887468	36887468	Frame_Shift_Del	G	-	p.G314fs
LIHC	TCGA-G3-A3CJ-01	ZFAND3	ENST00000287218.4	chr6	38029386:38029551:38084347:38084515:38120010:38120620,38050167:38050233:38084347:38084515:38120010:38120620,	38084348	38084515	38084493	38084493	Frame_Shift_Del	G	-	p.Q169fs
LIHC	TCGA-G3-A3CJ-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38881624:38881728:38882976:38883153:38885014:38885182,	38882977	38883153	38883056	38883056	Frame_Shift_Del	A	-	p.Q3131fs
LIHC	TCGA-G3-A3CJ-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38913242:38913364:38917227:38917346:38919093:38919296,	38917228	38917346	38917252	38917252	Frame_Shift_Del	A	-	p.K3835fs
LIHC	TCGA-G3-A3CJ-01	TSPO2	ENST00000373161.1,ENST00000470917.1	chr6	41010704:41010897:41011295:41011437:41011678:41011951,	41011296	41011437	41011330	41011330	Frame_Shift_Del	G	-	p.G71fs
LIHC	TCGA-G3-A3CJ-01	TREML1	ENST00000426005.2	chr6	41119019:41119122:41121495:41121828:41121983:41122070,	41121496	41121828	41121528	41121528	Frame_Shift_Del	A	-	p.L115fs
LIHC	TCGA-G3-A3CJ-01	TREM2	ENST00000373122.4	chr6	41126244:41126518:41126610:41126844:41127529:41127620,	41126611	41126844	41126780	41126780	Frame_Shift_Del	G	-	p.P169fs
LIHC	TCGA-G3-A3CJ-01	TREM2	ENST00000373113.3	chr6	41126244:41126518:41126610:41126804:41127529:41127620,	41126611	41126804	41126780	41126780	Frame_Shift_Del	G	-	p.P169fs
LIHC	TCGA-G3-A3CJ-01	PGC	ENST00000373025.3	chr6	41707619:41707684:41708228:41708348:41710027:41710076,	41708229	41708348	41708328	41708328	Frame_Shift_Del	C	-	p.G223fs
LIHC	TCGA-G3-A3CJ-01	CCND3	ENST00000512426.1	chr6	41904972:41905132:41908107:41908323:42016238:42016414,41904972:41905132:41908107:41908323:42017388:42018095,41904972:41905132:41908107:41908323:41909189:41909191,	41908108	41908323	41908153	41908153	Frame_Shift_Del	T	-	p.K42fs
LIHC	TCGA-G3-A3CJ-01	CCND3	ENST00000514588.1	chr6	41908231:41908323:41908689:41908899:42016238:42016426,	41908690	41908899	41908694	41908694	Frame_Shift_Del	G	-	p.P15fs
LIHC	TCGA-G3-A3CJ-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236161	42236161	Frame_Shift_Del	G	-	p.L390fs
LIHC	TCGA-G3-A3CJ-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43012489:43012623:43012964:43013140:43013324:43013420,	43012965	43013140	43013114	43013114	Frame_Shift_Del	C	-	p.G1047fs
LIHC	TCGA-G3-A3CJ-01	PTK7	ENST00000470019.1	chr6	43097464:43097567:43098248:43098399:43099753:43099902,	43098249	43098399	43098344	43098344	Frame_Shift_Del	C	-	p.P254fs
LIHC	TCGA-G3-A3CJ-01	CRIP3	ENST00000274990.4,ENST00000372569.3	chr6	43273956:43274051:43274183:43274255:43275349:43275481,	43274184	43274255	43274252	43274252	Frame_Shift_Del	G	-	p.P112fs
LIHC	TCGA-G3-A3CJ-01	ABCC10	ENST00000463024.1,ENST00000244533.3,ENST00000372530.4	chr6	43415421:43415675:43416618:43416764:43416844:43416942,	43416619	43416764	43416662	43416662	Frame_Shift_Del	G	-	p.G1307fs
LIHC	TCGA-G3-A3CJ-01	TMEM63B	ENST00000532634.1,ENST00000323267.6	chr6	44095375:44095415:44102297:44102480:44102753:44102833,	44102298	44102480	44102430	44102430	Frame_Shift_Del	C	-	p.P37fs
LIHC	TCGA-G3-A3CJ-01	TMEM63B	ENST00000534326.1	chr6	44095375:44095415:44102156:44102480:44102753:44102833,	44102157	44102480	44102430	44102430	Frame_Shift_Del	C	-	p.P37fs
LIHC	TCGA-G3-A3CJ-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390355	45390355	Frame_Shift_Del	C	-	p.S28fs
LIHC	TCGA-G3-A3CJ-01	GLYATL3	ENST00000545705.1	chr6	49467691:49467755:49479664:49479781:49483365:49483473,	49479665	49479781	49479750	49479750	Frame_Shift_Del	T	-	p.M16fs
LIHC	TCGA-G3-A3CJ-01	PKHD1	ENST00000371117.3	chr6	51497362:51497521:51503646:51503754:51512828:51512916,	51503647	51503754	51503672	51503672	Frame_Shift_Del	A	-	p.F3827fs
LIHC	TCGA-G3-A3CJ-01	GSTA4	ENST00000541324.1	chr6	52849261:52849403:52850273:52850381:52858954:52859055,	52850274	52850381	52850353	52850353	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-G3-A3CJ-01	GSTA4	ENST00000370963.4,ENST00000370959.1	chr6	52849261:52849403:52850248:52850381:52852154:52852206,	52850249	52850381	52850353	52850353	Frame_Shift_Del	G	-	p.P56fs
LIHC	TCGA-G3-A3CJ-01	ELOVL5	ENST00000304434.6,ENST00000542638.1	chr6	53140976:53141054:53156573:53156761:53160439:53160505,	53156574	53156761	53156718	53156718	Frame_Shift_Del	G	-	p.P34fs
LIHC	TCGA-G3-A3CJ-01	GCLC	ENST00000504353.1,ENST00000514373.1,ENST00000229416.6,ENST00000509541.1	chr6	53370189:53370294:53370600:53370693:53371710:53371712,	53370601	53370693	53370607	53370607	Frame_Shift_Del	G	-	p.P428fs
LIHC	TCGA-G3-A3CJ-01	MLIP	ENST00000274897.5,ENST00000447836.2	chr6	54001512:54003084:54013853:54013925:54025164:54025230,53989270:53989663:54013853:54013925:54025164:54025230,	54013854	54013925	54013912	54013912	Frame_Shift_Del	T	-	p.L749fs
LIHC	TCGA-G3-A3CJ-01	MLIP	ENST00000274897.5,ENST00000502396.1	chr6	54066902:54067031:54095511:54095715:54122105:54122159,	54095512	54095715	54095635	54095635	Frame_Shift_Del	C	-	p.P948fs
LIHC	TCGA-G3-A3CJ-01	COL21A1	ENST00000535941.1,ENST00000370819.1,ENST00000244728.5,ENST00000467045.1	chr6	55923962:55924040:55924815:55925016:55925538:55925593,	55924816	55925016	55925014	55925014	Frame_Shift_Del	G	-	p.Q804fs
LIHC	TCGA-G3-A3CJ-01	COL21A1	ENST00000535941.1,ENST00000370819.1,ENST00000244728.5,ENST00000370808.2,ENST00000467045.1,ENST00000488912.1	chr6	55929375:55929420:55932092:55932128:55933843:55933915,	55932093	55932128	55932115	55932115	Frame_Shift_Del	T	-	p.N702fs
LIHC	TCGA-G3-A3CJ-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000361203.3,ENST00000446842.2,ENST00000370788.2,ENST00000370769.4	chr6	56335903:56336066:56336856:56337020:56338670:56338788,	56336857	56337020	56336957	56336957	Frame_Shift_Del	T	-	p.N7322fs
LIHC	TCGA-G3-A3CJ-01	DST	ENST00000421834.2	chr6	56335903:56336066:56336937:56337020:56338670:56338788,	56336938	56337020	56336957	56336957	Frame_Shift_Del	T	-	p.N7322fs
LIHC	TCGA-G3-A3CJ-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000244364.6,ENST00000340834.4,ENST00000446842.2,ENST00000421834.2,ENST00000370769.4	chr6	56393638:56393723:56394245:56394572:56394771:56394931,	56394246	56394572	56394359	56394359	Frame_Shift_Del	C	-	p.E5797fs
LIHC	TCGA-G3-A3CJ-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56469407	56469407	Frame_Shift_Del	T	-	p.K3307fs
LIHC	TCGA-G3-A3CJ-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470874	56470874	Frame_Shift_Del	T	-	p.N2818fs
LIHC	TCGA-G3-A3CJ-01	ZNF451	ENST00000444273.2,ENST00000491832.2,ENST00000357489.3,ENST00000370706.4,ENST00000502749.1	chr6	56993526:56993638:56997839:56997990:56999541:56999668,	56997840	56997990	56997871	56997871	Frame_Shift_Del	A	-	p.T152fs
LIHC	TCGA-G3-A3CJ-01	ZNF451	ENST00000444273.2,ENST00000491832.2,ENST00000357489.3,ENST00000370706.4,ENST00000502749.1	chr6	56993526:56993638:56997839:56997990:56999541:56999668,	56997840	56997990	56997921	56997921	Frame_Shift_Del	T	-	p.I169fs
LIHC	TCGA-G3-A3CJ-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394385	64394385	Frame_Shift_Del	T	-	p.N254fs
LIHC	TCGA-G3-A3CJ-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395319	64395319	Frame_Shift_Del	A	-	p.K566fs
LIHC	TCGA-G3-A3CJ-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64395394	64395394	Frame_Shift_Del	C	-	p.P591fs
LIHC	TCGA-G3-A3CJ-01	PHF3	ENST00000481385.2,ENST00000515594.1,ENST00000509876.1,ENST00000393387.1,ENST00000506783.1,ENST00000262043.3	chr6	64401626:64401933:64404470:64404654:64408112:64408135,	64404471	64404654	64404595	64404595	Frame_Shift_Del	A	-	p.E874fs
LIHC	TCGA-G3-A3CJ-01	FAM135A	ENST00000393299.2,ENST00000370479.3,ENST00000457062.2,ENST00000425415.2,ENST00000194672.7	chr6	71191835:71191857:71195869:71195947:71200736:71200786,	71195870	71195947	71195913	71195913	Frame_Shift_Del	A	-	p.R246fs
LIHC	TCGA-G3-A3CJ-01	FAM135A	ENST00000418814.2,ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000505769.1,ENST00000505868.1,ENST00000361499.3	chr6	71245962:71246114:71247993:71248104:71266452:71266566,	71247994	71248104	71248017	71248017	Frame_Shift_Del	A	-	p.K1382fs
LIHC	TCGA-G3-A3CJ-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508387	71508387	Frame_Shift_Del	A	-	p.K176fs
LIHC	TCGA-G3-A3CJ-01	RIMS1	ENST00000524197.1,ENST00000520567.1,ENST00000264839.7,ENST00000453976.2,ENST00000522291.1,ENST00000518273.1,ENST00000517960.1,ENST00000521978.1,ENST00000491071.2,ENST00000370419.2,ENST00000348717.5,ENST00000517433.1,ENST00000401910.3,ENST00000517827.1,ENST00000523963.1,ENST00000425662.2	chr6	72947525:72947625:72952016:72952140:72955517:72955564,	72952017	72952140	72952063	72952063	Frame_Shift_Del	A	-	p.T668fs
LIHC	TCGA-G3-A3CJ-01	DDX43	ENST00000370336.4	chr6	74111641:74111713:74114412:74114494:74115401:74115558,	74114413	74114494	74114471	74114471	Frame_Shift_Del	A	-	p.S209fs
LIHC	TCGA-G3-A3CJ-01	MTO1	ENST00000415954.2,ENST00000370300.4,ENST00000498286.1,ENST00000370305.1,ENST00000370308.4	chr6	74176215:74176329:74183087:74183377:74189454:74189567,	74183088	74183377	74183240	74183240	Frame_Shift_Del	T	-	p.F230fs
LIHC	TCGA-G3-A3CJ-01	CD109	ENST00000422508.2,ENST00000437994.2,ENST00000287097.5	chr6	74468666:74468751:74472106:74472203:74472463:74472605,	74472107	74472203	74472191	74472191	Frame_Shift_Del	A	-	p.T281fs
LIHC	TCGA-G3-A3CJ-01	CD109	ENST00000422508.2,ENST00000437994.2,ENST00000287097.5	chr6	74476481:74476583:74476670:74476733:74477777:74477954,	74476671	74476733	74476718	74476718	Frame_Shift_Del	G	-	p.K494fs
LIHC	TCGA-G3-A3CJ-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797406	75797406	Frame_Shift_Del	G	-	p.P3023fs
LIHC	TCGA-G3-A3CJ-01	COL12A1	ENST00000345356.6,ENST00000425443.2,ENST00000483888.2,ENST00000322507.8	chr6	75813472:75813526:75814921:75815008:75816134:75816212,	75814922	75815008	75814982	75814982	Frame_Shift_Del	A	-	p.F2735fs
LIHC	TCGA-G3-A3CJ-01	SENP6	ENST00000370014.3,ENST00000327284.8,ENST00000447266.2	chr6	76311939:76312292:76331247:76331341:76332466:76332574,76311939:76312292:76331247:76331341:76333615:76333676,	76331248	76331341	76331286	76331286	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-G3-A3CJ-01	SENP6	ENST00000370014.3,ENST00000327284.8,ENST00000447266.2	chr6	76311939:76312292:76331247:76331341:76332466:76332574,76311939:76312292:76331247:76331341:76333615:76333676,	76331248	76331341	76331301	76331301	Frame_Shift_Del	T	-	p.F36fs
LIHC	TCGA-G3-A3CJ-01	SENP6	ENST00000370010.2,ENST00000370014.3,ENST00000447266.2	chr6	76407140:76407233:76412360:76412788:76419242:76419346,	76412361	76412788	76412737	76412737	Frame_Shift_Del	A	-	p.K889fs
LIHC	TCGA-G3-A3CJ-01	MYO6	ENST00000369977.3,ENST00000369985.4,ENST00000369981.3,ENST00000369975.1	chr6	76589759:76589837:76591405:76591535:76595720:76595811,	76591406	76591535	76591502	76591502	Frame_Shift_Del	A	-	p.K795fs
LIHC	TCGA-G3-A3CJ-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000445419.2,ENST00000369751.2,ENST00000505222.1,ENST00000503631.1	chr6	82906014:82906163:82909857:82909970:82910303:82910425,	82909858	82909970	82909945	82909945	Frame_Shift_Del	T	-	p.T980fs
LIHC	TCGA-G3-A3CJ-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924019	82924019	Frame_Shift_Del	T	-	p.N710fs
LIHC	TCGA-G3-A3CJ-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924492	82924492	Frame_Shift_Del	T	-	p.K552fs
LIHC	TCGA-G3-A3CJ-01	UBE3D	ENST00000237186.6,ENST00000369746.2,ENST00000369747.3,ENST00000505226.1,ENST00000509102.1	chr6	83748134:83748204:83754146:83754378:83763866:83763957,	83754147	83754378	83754300	83754300	Frame_Shift_Del	G	-	p.P148fs
LIHC	TCGA-G3-A3CJ-01	PGM3	ENST00000512866.1,ENST00000506587.1,ENST00000513973.1,ENST00000283977.4	chr6	83888391:83888475:83889528:83889686:83891454:83891650,	83889529	83889686	83889595	83889595	Frame_Shift_Del	A	-	p.F293fs
LIHC	TCGA-G3-A3CJ-01	ME1	ENST00000541327.1,ENST00000369705.3,ENST00000543031.1	chr6	83963347:83963457:84025028:84025132:84055891:84056053,	84025029	84025132	84025059	84025059	Frame_Shift_Del	A	-	p.L225fs
LIHC	TCGA-G3-A3CJ-01	CYB5R4	ENST00000369681.5,ENST00000479164.1	chr6	84644313:84644454:84645942:84646095:84649774:84649925,	84645943	84646095	84646043	84646043	Frame_Shift_Del	A	-	p.I352fs
LIHC	TCGA-G3-A3CJ-01	RARS2	ENST00000369536.5	chr6	88224124:88224217:88224674:88224738:88226523:88226598,	88224675	88224738	88224699	88224699	Frame_Shift_Del	T	-	p.K542fs
LIHC	TCGA-G3-A3CJ-01	ORC3	ENST00000546266.1	chr6	88311501:88311599:88313101:88313246:88315634:88315739,88304070:88304125:88313101:88313246:88315634:88315739,	88313102	88313246	88313157	88313157	Frame_Shift_Del	A	-	p.Q78fs
LIHC	TCGA-G3-A3CJ-01	ORC3	ENST00000392844.3,ENST00000546266.1,ENST00000257789.4,ENST00000417380.2	chr6	88321806:88321966:88326031:88326145:88331071:88331205,	88326032	88326145	88326069	88326069	Frame_Shift_Del	A	-	p.E304fs
LIHC	TCGA-G3-A3CJ-01	RNGTT	ENST00000369475.3,ENST00000265607.6	chr6	89638882:89638986:89650789:89650899:89673064:89673280,	89650790	89650899	89650836	89650836	Frame_Shift_Del	T	-	p.N43fs
LIHC	TCGA-G3-A3CJ-01	PM20D2	ENST00000275072.4	chr6	89862761:89862904:89864466:89864621:89868043:89868179,	89864467	89864621	89864474	89864474	Frame_Shift_Del	A	-	p.I255fs
LIHC	TCGA-G3-A3CJ-01	PM20D2	ENST00000275072.4	chr6	89862761:89862904:89864466:89864621:89868043:89868179,	89864467	89864621	89864571	89864571	Frame_Shift_Del	A	-	p.K289fs
LIHC	TCGA-G3-A3CJ-01	RRAGD	ENST00000359203.3,ENST00000369415.4	chr6	90082155:90082304:90087389:90087532:90088942:90089057,	90087390	90087532	90087487	90087487	Frame_Shift_Del	T	-	p.I269fs
LIHC	TCGA-G3-A3CJ-01	KLHL32	ENST00000369261.4,ENST00000536676.1,ENST00000539200.1	chr6	97533163:97533217:97561658:97562385:97575279:97575338,	97561659	97562385	97561775	97561775	Frame_Shift_Del	C	-	p.H248fs
LIHC	TCGA-G3-A3CJ-01	KLHL32	ENST00000369261.4,ENST00000536676.1,ENST00000539200.1	chr6	97533163:97533217:97561658:97562385:97575279:97575338,	97561659	97562385	97561917	97561917	Frame_Shift_Del	G	-	p.G296fs
LIHC	TCGA-G3-A3CJ-01	KLHL32	ENST00000369261.4,ENST00000536676.1,ENST00000539200.1	chr6	97533163:97533217:97561658:97562385:97575279:97575338,	97561659	97562385	97561920	97561920	Frame_Shift_Del	A	-	p.K298fs
LIHC	TCGA-G3-A3CJ-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99321600:99322317:99323290:99323603:99328428:99328500,	99323291	99323603	99323506	99323506	Frame_Shift_Del	C	-	p.G496fs
LIHC	TCGA-G3-A3CJ-01	FBXL4	ENST00000229971.1,ENST00000369244.2	chr6	99353301:99353546:99365249:99365595:99374352:99374462,	99365250	99365595	99365422	99365422	Frame_Shift_Del	T	-	p.K229fs
LIHC	TCGA-G3-A3CJ-01	FAXC	ENST00000480148.1	chr6	99781226:99781423:99790773:99790909:99796982:99797104,	99790774	99790909	99790817	99790817	Frame_Shift_Del	A	-	p.L120fs
LIHC	TCGA-G3-A3CJ-01	COQ3	ENST00000254759.3	chr6	99819303:99819463:99823815:99824058:99825261:99825327,	99823816	99824058	99823998	99823998	Frame_Shift_Del	T	-	p.T183fs
LIHC	TCGA-G3-A3CJ-01	COQ3	ENST00000254759.3,ENST00000369242.1	chr6	99825261:99825361:99828064:99828217:99831573:99831700,	99828065	99828217	99828126	99828126	Frame_Shift_Del	C	-	p.D109fs
LIHC	TCGA-G3-A3CJ-01	GRIK2	ENST00000318991.6,ENST00000369134.4,ENST00000413795.1,ENST00000421544.1,ENST00000369138.1	chr6	102337514:102337738:102372475:102372594:102376289:102376507,	102372476	102372594	102372554	102372554	Frame_Shift_Del	A	-	p.L609fs
LIHC	TCGA-G3-A3CJ-01	QRSL1	ENST00000369044.1	chr6	107077488:107077580:107088223:107088383:107088697:107088737,	107088224	107088383	107088273	107088273	Frame_Shift_Del	A	-	p.Q25fs
LIHC	TCGA-G3-A3CJ-01	QRSL1	ENST00000369044.1,ENST00000369046.4	chr6	107088697:107088796:107090868:107090965:107096899:107097076,	107090869	107090965	107090936	107090936	Frame_Shift_Del	A	-	p.G117fs
LIHC	TCGA-G3-A3CJ-01	QRSL1	ENST00000369046.4	chr6	107103489:107103607:107110854:107111060:107113656:107116292,	107110855	107111060	107110886	107110886	Frame_Shift_Del	A	-	p.K398fs
LIHC	TCGA-G3-A3CJ-01	C6orf203	ENST00000443043.1,ENST00000405204.2,ENST00000311381.5	chr6	107361195:107361434:107365463:107365536:107372260:107372544,	107365464	107365536	107365525	107365525	Frame_Shift_Del	A	-	p.K183fs
LIHC	TCGA-G3-A3CJ-01	SCML4	ENST00000369025.2	chr6	108029069:108029215:108041906:108042197:108066152:108066347,108029073:108029215:108041906:108042197:108053177:108053307,	108041907	108042197	108042104	108042104	Frame_Shift_Del	C	-	p.G201fs
LIHC	TCGA-G3-A3CJ-01	OSTM1	ENST00000193322.3,ENST00000440575.2	chr6	108370456:108370622:108372234:108372402:108375693:108375791,	108372235	108372402	108372297	108372297	Frame_Shift_Del	T	-	p.M241fs
LIHC	TCGA-G3-A3CJ-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108986045	108986045	Frame_Shift_Del	G	-	p.W670fs
LIHC	TCGA-G3-A3CJ-01	ARMC2	ENST00000392644.4,ENST00000368972.3	chr6	109285382:109285515:109286182:109286343:109294559:109294985,	109286183	109286343	109286337	109286337	Frame_Shift_Del	T	-	p.F814fs
LIHC	TCGA-G3-A3CJ-01	PPIL6	ENST00000440797.2,ENST00000447468.3	chr6	109752493:109752548:109757306:109757402:109761658:109761707,	109757307	109757402	109757309	109757309	Frame_Shift_Del	T	-	p.R77fs
LIHC	TCGA-G3-A3CJ-01	AK9	ENST00000424296.2,ENST00000470564.1	chr6	109818998:109819168:109820246:109820443:109827529:109827621,	109820247	109820443	109820335	109820335	Frame_Shift_Del	A	-	p.L1653fs
LIHC	TCGA-G3-A3CJ-01	FIG4	ENST00000441478.2,ENST00000230124.3	chr6	110064877:110064975:110081452:110081586:110083293:110083410,	110081453	110081586	110081525	110081525	Frame_Shift_Del	T	-	p.F404fs
LIHC	TCGA-G3-A3CJ-01	FIG4	ENST00000441478.2,ENST00000230124.3,ENST00000415980.1	chr6	110087931:110088098:110098124:110098263:110106172:110106231,	110098125	110098263	110098172	110098172	Frame_Shift_Del	C	-	p.P600fs
LIHC	TCGA-G3-A3CJ-01	WASF1	ENST00000447287.1,ENST00000392588.1,ENST00000368938.1	chr6	110434528:110434663:110448671:110448832:110499800:110499945,	110448672	110448832	110448698	110448698	Frame_Shift_Del	T	-	p.N36fs
LIHC	TCGA-G3-A3CJ-01	WASF1	ENST00000447287.1,ENST00000392588.1,ENST00000368938.1	chr6	110434528:110434663:110448671:110448832:110499800:110499945,	110448672	110448832	110448789	110448789	Frame_Shift_Del	T	-	p.R6fs
LIHC	TCGA-G3-A3CJ-01	AMD1	ENST00000368876.1,ENST00000368877.5,ENST00000368885.3	chr6	111210059:111210186:111211456:111211559:111213363:111213406,	111211457	111211559	111211530	111211530	Frame_Shift_Del	A	-	p.E133fs
LIHC	TCGA-G3-A3CJ-01	RPF2	ENST00000441448.2,ENST00000607388.1	chr6	111336956:111337059:111345385:111345530:111346605:111347303,	111345386	111345530	111345407	111345407	Frame_Shift_Del	T	-	p.G206fs
LIHC	TCGA-G3-A3CJ-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111654325:111654570:111656671:111656813:111665127:111665246,	111656672	111656813	111656711	111656711	Frame_Shift_Del	A	-	p.F2469fs
LIHC	TCGA-G3-A3CJ-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111678216:111678328:111680024:111680217:111685055:111685181,	111680025	111680217	111680079	111680079	Frame_Shift_Del	T	-	p.T2262fs
LIHC	TCGA-G3-A3CJ-01	FYN	ENST00000496864.2,ENST00000476769.2,ENST00000368667.2,ENST00000354650.3	chr6	112017502:112017659:112021306:112021471:112024087:112024189,	112021307	112021471	112021358	112021358	Frame_Shift_Del	G	-	p.L271fs
LIHC	TCGA-G3-A3CJ-01	TUBE1	ENST00000605457.1,ENST00000604743.1,ENST00000441191.1,ENST00000368662.5,ENST00000604967.1,ENST00000604814.1	chr6	112397637:112397712:112400835:112400957:112402294:112402406,	112400836	112400957	112400910	112400910	Frame_Shift_Del	A	-	p.L125fs
LIHC	TCGA-G3-A3CJ-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112441485:112441675:112443216:112443404:112450123:112450277,	112443217	112443404	112443343	112443343	Frame_Shift_Del	T	-	p.N1450fs
LIHC	TCGA-G3-A3CJ-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000230538.7,ENST00000522006.1	chr6	112460321:112460493:112460953:112461087:112461961:112462124,	112460954	112461087	112461032	112461032	Frame_Shift_Del	A	-	p.L1011fs
LIHC	TCGA-G3-A3CJ-01	RSPH4A	ENST00000229554.5	chr6	116943930:116944165:116948791:116949532:116950729:116950825,	116948792	116949532	116949495	116949495	Frame_Shift_Del	C	-	p.S542fs
LIHC	TCGA-G3-A3CJ-01	KPNA5	ENST00000368564.1,ENST00000356348.1	chr6	117013455:117013555:117019866:117019961:117023181:117023313,	117019867	117019961	117019920	117019920	Frame_Shift_Del	T	-	p.F132fs
LIHC	TCGA-G3-A3CJ-01	KPNA5	ENST00000368564.1,ENST00000356348.1	chr6	117013455:117013555:117019866:117019961:117023181:117023313,	117019867	117019961	117019926	117019926	Frame_Shift_Del	A	-	p.K134fs
LIHC	TCGA-G3-A3CJ-01	KPNA5	ENST00000368564.1,ENST00000356348.1	chr6	117026234:117026323:117037381:117037481:117043288:117043452,	117037382	117037481	117037432	117037432	Frame_Shift_Del	C	-	p.A236fs
LIHC	TCGA-G3-A3CJ-01	RFX6	ENST00000487683.1,ENST00000332958.2,ENST00000471966.1	chr6	117216342:117216370:117232097:117232205:117237170:117237248,	117232098	117232205	117232157	117232157	Frame_Shift_Del	C	-	p.F244fs
LIHC	TCGA-G3-A3CJ-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118887294	118887294	Frame_Shift_Del	C	-	p.E140fs
LIHC	TCGA-G3-A3CJ-01	MCM9	ENST00000316316.6	chr6	119147944:119148027:119149089:119149293:119150210:119150413,	119149090	119149293	119149111	119149111	Frame_Shift_Del	T	-	p.S571fs
LIHC	TCGA-G3-A3CJ-01	FAM184A	ENST00000475529.2,ENST00000521043.1,ENST00000338891.7	chr6	119287999:119288117:119295592:119295739:119296188:119296373,	119295593	119295739	119295662	119295662	Frame_Shift_Del	T	-	p.N949fs
LIHC	TCGA-G3-A3CJ-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345806	119345806	Frame_Shift_Del	A	-	p.L111fs
LIHC	TCGA-G3-A3CJ-01	SMPDL3A	ENST00000368440.4,ENST00000539041.1	chr6	123117974:123118113:123122454:123122551:123124808:123124978,	123122455	123122551	123122459	123122459	Frame_Shift_Del	A	-	p.Q159fs
LIHC	TCGA-G3-A3CJ-01	RNF217	ENST00000560949.1,ENST00000519565.1,ENST00000368415.2,ENST00000368414.2,ENST00000275184.6,ENST00000521654.2	chr6	125397802:125398004:125402581:125402653:125404009:125404100,	125402582	125402653	125402615	125402615	Frame_Shift_Del	T	-	p.V506fs
LIHC	TCGA-G3-A3CJ-01	TRMT11	ENST00000334379.5,ENST00000479748.1,ENST00000368332.3,ENST00000444121.1,ENST00000450358.1,ENST00000446681.1,ENST00000468097.1	chr6	126317112:126317186:126319198:126319280:126319368:126319461,	126319199	126319280	126319257	126319257	Frame_Shift_Del	A	-	p.K91fs
LIHC	TCGA-G3-A3CJ-01	ECHDC1	ENST00000528402.1	chr6	127637603:127637647:127648146:127648289:127664480:127664493,127636010:127636041:127648146:127648289:127664480:127664493,	127648147	127648289	127648231	127648231	Frame_Shift_Del	C	-	p.G99fs
LIHC	TCGA-G3-A3CJ-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128410834:128411137:128505576:128505870:128540066:128540241,	128505577	128505870	128505849	128505849	Frame_Shift_Del	G	-	p.P298fs
LIHC	TCGA-G3-A3CJ-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000495748.1,ENST00000368207.3,ENST00000532331.1	chr6	128563665:128563747:128643183:128643455:128718710:128718762,	128643184	128643455	128643242	128643242	Frame_Shift_Del	C	-	p.G146fs
LIHC	TCGA-G3-A3CJ-01	L3MBTL3	ENST00000526019.1,ENST00000533560.1,ENST00000529410.1,ENST00000361794.2,ENST00000368139.2,ENST00000368136.2	chr6	130415409:130415512:130425570:130425720:130442023:130442103,	130425571	130425720	130425618	130425618	Frame_Shift_Del	T	-	p.I595fs
LIHC	TCGA-G3-A3CJ-01	EPB41L2	ENST00000528282.1,ENST00000445890.2	chr6	131186675:131186774:131188598:131188721:131190951:131191266,131186675:131186774:131188598:131188721:131190702:131191266,131186675:131186774:131188598:131188721:131206235:131206408,	131188599	131188721	131188622	131188622	Frame_Shift_Del	T	-	p.T903fs
LIHC	TCGA-G3-A3CJ-01	EPB41L2	ENST00000527423.1,ENST00000368128.2,ENST00000337057.3	chr6	131191216:131191266:131199243:131199390:131201283:131201346,	131199244	131199390	131199285	131199285	Frame_Shift_Del	C	-	p.E668fs
LIHC	TCGA-G3-A3CJ-01	AKAP7	ENST00000368123.4,ENST00000541650.1,ENST00000431975.2	chr6	131490252:131490413:131520600:131520713:131540800:131540890,	131520601	131520713	131520625	131520625	Frame_Shift_Del	A	-	p.E205fs
LIHC	TCGA-G3-A3CJ-01	ARG1	ENST00000275196.5,ENST00000356962.2,ENST00000368087.3	chr6	131902358:131902518:131903760:131903855:131904199:131904304,	131903761	131903855	131903786	131903786	Frame_Shift_Del	G	-	p.W164fs
LIHC	TCGA-G3-A3CJ-01	ENPP3	ENST00000423831.1,ENST00000414305.1,ENST00000543135.1,ENST00000470930.1,ENST00000357639.3,ENST00000427707.1,ENST00000358229.5,ENST00000427148.2	chr6	131962594:131962670:131971166:131971289:131973681:131973791,	131971167	131971289	131971264	131971264	Frame_Shift_Del	T	-	p.D84fs
LIHC	TCGA-G3-A3CJ-01	ENPP3	ENST00000470930.1	chr6	131971166:131971289:131973681:131973807:131979462:131979560,	131973682	131973807	131973737	131973737	Frame_Shift_Del	C	-	p.S111fs
LIHC	TCGA-G3-A3CJ-01	ENPP1	ENST00000360971.2,ENST00000459624.1,ENST00000513998.1	chr6	132189157:132189266:132190497:132190629:132193209:132193241,	132190498	132190629	132190617	132190617	Frame_Shift_Del	A	-	p.K465fs
LIHC	TCGA-G3-A3CJ-01	VNN3	ENST00000414302.2	chr6	133046059:133046118:133047860:133048151:133049879:133050072,133046059:133046118:133047860:133048151:133055391:133055472,	133047861	133048151	133048059	133048059	Frame_Shift_Del	A	-	p.F210fs
LIHC	TCGA-G3-A3CJ-01	VNN3	ENST00000425515.2	chr6	133047860:133047977:133049879:133050118:133055391:133055472,133046059:133046118:133049879:133050118:133055391:133055472,133048132:133048151:133049879:133050118:133055391:133055472,	133049880	133050118	133049953	133049953	Frame_Shift_Del	G	-	p.P155fs
LIHC	TCGA-G3-A3CJ-01	VNN3	ENST00000207771.3,ENST00000367927.5	chr6	133046059:133046118:133049879:133050072:133055391:133055472,133048132:133048151:133049879:133050072:133055391:133055472,	133049880	133050072	133049953	133049953	Frame_Shift_Del	G	-	p.P155fs
LIHC	TCGA-G3-A3CJ-01	VNN2	ENST00000525674.1	chr6	133070887:133071004:133072283:133072657:133076981:133077174,	133072284	133072657	133072480	133072480	Frame_Shift_Del	T	-	p.N335fs
LIHC	TCGA-G3-A3CJ-01	SLC18B1	ENST00000275227.4	chr6	133105071:133105228:133108572:133108720:133110902:133110976,	133108573	133108720	133108696	133108696	Frame_Shift_Del	C	-	p.G126fs
LIHC	TCGA-G3-A3CJ-01	SGK1	ENST00000533224.1	chr6	134583175:134583286:134638529:134638680:134638952:134639049,	134638530	134638680	134638591	134638591	Frame_Shift_Del	T	-	p.N3fs
LIHC	TCGA-G3-A3CJ-01	HBS1L	ENST00000367822.5,ENST00000314674.3,ENST00000415177.2,ENST00000367820.2	chr6	135360710:135360905:135371719:135371785:135375786:135375938,135363138:135363264:135371719:135371785:135375786:135375938,	135371720	135371785	135371781	135371781	Frame_Shift_Del	A	-	p.F16fs
LIHC	TCGA-G3-A3CJ-01	MYB	ENST00000525514.1,ENST00000533384.1,ENST00000528345.1,ENST00000525940.1,ENST00000529586.1,ENST00000526889.1,ENST00000525369.1,ENST00000526187.1,ENST00000531634.1,ENST00000534121.1,ENST00000524588.1,ENST00000528015.1,ENST00000531737.1,ENST00000533837.1,ENST00000442647.2,ENST00000529262.1,ENST00000531519.1,ENST00000526565.1,ENST00000528774.1,ENST00000438901.2,ENST00000339290.5,ENST00000463282.2,ENST00000341911.5,ENST00000527615.1,ENST00000533624.1,ENST00000367814.4,ENST00000531845.1,ENST00000528140.1,ENST00000525477.1,ENST00000533808.1,ENST00000526320.1	chr6	135521427:135521553:135522776:135522887:135524354:135524462,	135522777	135522887	135522831	135522831	Frame_Shift_Del	G	-	p.G669fs
LIHC	TCGA-G3-A3CJ-01	AHI1	ENST00000265602.6,ENST00000417892.2,ENST00000475846.2,ENST00000367800.4,ENST00000457866.2,ENST00000367799.2	chr6	135639656:135639754:135644299:135644462:135679269:135679325,	135644300	135644462	135644383	135644383	Frame_Shift_Del	A	-	p.F1082fs
LIHC	TCGA-G3-A3CJ-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000327035.6,ENST00000457866.2,ENST00000367799.2	chr6	135763719:135763852:135768145:135768298:135769427:135769552,	135768146	135768298	135768254	135768254	Frame_Shift_Del	T	-	p.K557fs
LIHC	TCGA-G3-A3CJ-01	MAP3K5	ENST00000359015.4	chr6	137019626:137019820:137026247:137026271:137041587:137041727,	137026248	137026271	137026268	137026268	Frame_Shift_Del	T	-	p.I199fs
LIHC	TCGA-G3-A3CJ-01	TNFAIP3	ENST00000237289.4	chr6	138195981:138196172:138196824:138196972:138197132:138197303,	138196825	138196972	138196927	138196927	Frame_Shift_Del	T	-	p.F197fs
LIHC	TCGA-G3-A3CJ-01	NHSL1	ENST00000426841.2,ENST00000343505.5,ENST00000342260.5,ENST00000427025.2,ENST00000533765.1,ENST00000491526.2	chr6	138768260:138768330:138794442:138794570:138817355:138817508,	138794443	138794570	138794554	138794554	Frame_Shift_Del	C	-	p.R124fs
LIHC	TCGA-G3-A3CJ-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091284	143091284	Frame_Shift_Del	G	-	p.P1531fs
LIHC	TCGA-G3-A3CJ-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143092079	143092079	Frame_Shift_Del	T	-	p.K1267fs
LIHC	TCGA-G3-A3CJ-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094672	143094672	Frame_Shift_Del	A	-	p.S402fs
LIHC	TCGA-G3-A3CJ-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095305	143095305	Frame_Shift_Del	A	-	p.C191fs
LIHC	TCGA-G3-A3CJ-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000420771.2,ENST00000542769.1,ENST00000367582.3	chr6	144070121:144070202:144074890:144075049:144086397:144086611,	144074891	144075049	144075008	144075008	Frame_Shift_Del	A	-	p.E127fs
LIHC	TCGA-G3-A3CJ-01	ZC2HC1B	ENST00000454207.1,ENST00000539295.1,ENST00000237275.6	chr6	144224180:144224289:144258785:144258870:144259278:144259338,	144258786	144258870	144258814	144258814	Frame_Shift_Del	A	-	p.A209fs
LIHC	TCGA-G3-A3CJ-01	EPM2A	ENST00000435470.1,ENST00000367519.3	chr6	145948623:145948829:145956380:145956622:146007257:146007282,	145956381	145956622	145956544	145956544	Frame_Shift_Del	C	-	p.G185fs
LIHC	TCGA-G3-A3CJ-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149699252	149699252	Frame_Shift_Del	A	-	p.G67fs
LIHC	TCGA-G3-A3CJ-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700167	149700167	Frame_Shift_Del	C	-	p.S372fs
LIHC	TCGA-G3-A3CJ-01	GINM1	ENST00000367419.5	chr6	149893642:149893739:149899957:149900109:149900969:149901126,	149899958	149900109	149900063	149900063	Frame_Shift_Del	A	-	p.Q128fs
LIHC	TCGA-G3-A3CJ-01	NUP43	ENST00000460354.2,ENST00000340413.2	chr6	150057606:150057758:150059778:150059914:150063525:150063706,	150059779	150059914	150059828	150059828	Frame_Shift_Del	T	-	p.I197fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151054719:151055228:151089773:151089874:151107525:151107595,	151089774	151089874	151089838	151089838	Frame_Shift_Del	T	-	p.L159fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG1	ENST00000358517.2,ENST00000475490.1,ENST00000367328.1	chr6	151140814:151140910:151142330:151142369:151144789:151144812,	151142331	151142369	151142343	151142343	Frame_Shift_Del	G	-	p.R474fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151151943	151151943	Frame_Shift_Del	T	-	p.F566fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151153126	151153126	Frame_Shift_Del	A	-	p.E960fs
LIHC	TCGA-G3-A3CJ-01	CCDC170	ENST00000367290.5	chr6	151815174:151815320:151857452:151857581:151859179:151859436,	151857453	151857581	151857558	151857558	Frame_Shift_Del	A	-	p.K55fs
LIHC	TCGA-G3-A3CJ-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000443427.1,ENST00000338799.5,ENST00000427531.2	chr6	152201791:152201906:152265307:152265643:152332790:152332929,	152265308	152265643	152265517	152265517	Frame_Shift_Del	C	-	p.P325fs
LIHC	TCGA-G3-A3CJ-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000443427.1,ENST00000338799.5,ENST00000427531.2	chr6	152201791:152201906:152265307:152265643:152332790:152332929,	152265308	152265643	152265576	152265576	Frame_Shift_Del	G	-	p.M343fs
LIHC	TCGA-G3-A3CJ-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367251.3,ENST00000367255.5,ENST00000367256.5,ENST00000367257.4,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152534746:152534894:152536040:152536195:152539391:152539520,	152536041	152536195	152536102	152536102	Frame_Shift_Del	T	-	p.R7429fs
LIHC	TCGA-G3-A3CJ-01	SYNE1	ENST00000341594.5,ENST00000356820.4,ENST00000367255.5,ENST00000367256.5,ENST00000265368.4,ENST00000448038.1,ENST00000409694.2,ENST00000423061.1	chr6	152557951:152558083:152560667:152560841:152563374:152563575,	152560668	152560841	152560757	152560757	Frame_Shift_Del	T	-	p.T6660fs
LIHC	TCGA-G3-A3CJ-01	FBXO5	ENST00000367241.3,ENST00000229758.3	chr6	153293406:153293589:153294180:153294271:153296041:153296756,	153294181	153294271	153294219	153294219	Frame_Shift_Del	C	-	p.A245fs
LIHC	TCGA-G3-A3CJ-01	MTRF1L	ENST00000461949.1	chr6	153310939:153311230:153312319:153312551:153313991:153314109,	153312320	153312551	153312414	153312414	Frame_Shift_Del	T	-	p.N283fs
LIHC	TCGA-G3-A3CJ-01	MTRF1L	ENST00000367233.5,ENST00000464135.1,ENST00000414771.1	chr6	153310939:153311230:153312319:153312456:153313991:153314109,	153312320	153312456	153312414	153312414	Frame_Shift_Del	T	-	p.N283fs
LIHC	TCGA-G3-A3CJ-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155116142:155116273:155123104:155123281:155124677:155124757,	155123105	155123281	155123147	155123147	Frame_Shift_Del	C	-	p.P217fs
LIHC	TCGA-G3-A3CJ-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405954	157405954	Frame_Shift_Del	G	-	p.P732fs
LIHC	TCGA-G3-A3CJ-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157405899:157406039:157431605:157431695:157454161:157454341,	157431606	157431695	157431677	157431677	Frame_Shift_Del	C	-	p.P785fs
LIHC	TCGA-G3-A3CJ-01	ARID1B	ENST00000478761.2,ENST00000367148.1,ENST00000319584.6,ENST00000275248.4,ENST00000414678.2	chr6	157495159:157495251:157495980:157496139:157502102:157502312,	157495981	157496139	157496011	157496011	Frame_Shift_Del	C	-	p.P1044fs
LIHC	TCGA-G3-A3CJ-01	SYNJ2	ENST00000367121.3,ENST00000367122.2,ENST00000355585.4	chr6	158487475:158487667:158489678:158489760:158490564:158490705,	158489679	158489760	158489741	158489741	Frame_Shift_Del	G	-	p.G594fs
LIHC	TCGA-G3-A3CJ-01	TULP4	ENST00000367097.3,ENST00000367094.2	chr6	158902086:158902321:158910619:158910764:158914604:158914749,	158910620	158910764	158910724	158910724	Frame_Shift_Del	C	-	p.P531fs
LIHC	TCGA-G3-A3CJ-01	TMEM181	ENST00000367090.3	chr6	158994451:158994555:159001971:159002027:159004985:159005076,	159001972	159002027	159002003	159002003	Frame_Shift_Del	T	-	p.N185fs
LIHC	TCGA-G3-A3CJ-01	FNDC1	ENST00000329629.8,ENST00000297267.9,ENST00000340366.6	chr6	159682221:159682301:159686006:159686036:159687115:159687277,	159686007	159686036	159686030	159686030	Frame_Shift_Del	C	-	p.P1761fs
LIHC	TCGA-G3-A3CJ-01	MRPL18	ENST00000367034.4	chr6	160211497:160211671:160211971:160212158:160218318:160218379,	160211972	160212158	160212053	160212053	Frame_Shift_Del	C	-	p.A45fs
LIHC	TCGA-G3-A3CJ-01	IGF2R	ENST00000356956.1	chr6	160464179:160464320:160465545:160465689:160466776:160466914,	160465546	160465689	160465571	160465571	Frame_Shift_Del	A	-	p.G549fs
LIHC	TCGA-G3-A3CJ-01	IGF2R	ENST00000356956.1	chr6	160465545:160465689:160466776:160466914:160467529:160467677,	160466777	160466914	160466800	160466800	Frame_Shift_Del	T	-	p.L597fs
LIHC	TCGA-G3-A3CJ-01	IGF2R	ENST00000356956.1	chr6	160483563:160483651:160484446:160484662:160485432:160485563,	160484447	160484662	160484586	160484586	Frame_Shift_Del	C	-	p.C1270fs
LIHC	TCGA-G3-A3CJ-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485488	Frame_Shift_Del	G	-	p.T1314fs
LIHC	TCGA-G3-A3CJ-01	IGF2R	ENST00000356956.1,ENST00000475584.1	chr6	160517478:160517657:160523550:160523703:160524777:160524847,	160523551	160523703	160523576	160523576	Frame_Shift_Del	G	-	p.G2290fs
LIHC	TCGA-G3-A3CJ-01	SLC22A1	ENST00000366963.4,ENST00000539263.1	chr6	160564572:160564681:160575829:160575942:160579547:160579583,160564572:160564681:160575829:160575942:160577006:160577106,	160575830	160575942	160575883	160575883	Frame_Shift_Del	C	-	p.T480fs
LIHC	TCGA-G3-A3CJ-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161469647:161471011:161491639:161491882:161494497:161494568,	161491640	161491882	161491649	161491649	Frame_Shift_Del	T	-	p.F573fs
LIHC	TCGA-G3-A3CJ-01	AGPAT4	ENST00000320285.4	chr6	161575180:161575342:161587279:161587449:161653067:161653268,	161587280	161587449	161587342	161587342	Frame_Shift_Del	G	-	p.H96fs
LIHC	TCGA-G3-A3CJ-01	AGPAT4	ENST00000320285.4	chr6	161575180:161575342:161587279:161587449:161653067:161653268,	161587280	161587449	161587362	161587362	Frame_Shift_Del	T	-	p.N89fs
LIHC	TCGA-G3-A3CJ-01	QKI	ENST00000537883.1	chr6	163899811:163899928:163956013:163956157:163983013:163983101,163876362:163876453:163956013:163956157:163983013:163983101,	163956014	163956157	163956035	163956035	Frame_Shift_Del	C	-	p.P142fs
LIHC	TCGA-G3-A3CJ-01	PDE10A	ENST00000539869.2	chr6	165895802:165895831:165956927:165957056:166075434:166075557,	165956928	165957056	165957012	165957012	Frame_Shift_Del	G	-	p.Q28fs
LIHC	TCGA-G3-A3CJ-01	SFT2D1	ENST00000478705.1,ENST00000487841.1,ENST00000488773.1,ENST00000361731.3	chr6	166741763:166741845:166742994:166743077:166743648:166743735,	166742995	166743077	166743043	166743043	Frame_Shift_Del	T	-	p.K62fs
LIHC	TCGA-G3-A3CJ-01	THBS2	ENST00000366787.3	chr6	169648869:169649068:169650827:169650901:169653818:169653991,	169650828	169650901	169650876	169650876	Frame_Shift_Del	C	-	p.V2fs
LIHC	TCGA-G3-A3CJ-01	WDR27	ENST00000546525.1,ENST00000423258.1,ENST00000448612.1,ENST00000441385.2,ENST00000333572.6	chr6	170049293:170049371:170052025:170052104:170058371:170058454,	170052026	170052104	170052068	170052068	Frame_Shift_Del	A	-	p.F480fs
LIHC	TCGA-G3-A3CJ-01	PHF10	ENST00000366780.4,ENST00000339209.4	chr6	170104000:170104184:170105228:170105417:170105711:170105820,	170105229	170105417	170105337	170105337	Frame_Shift_Del	T	-	p.T435fs
LIHC	TCGA-G3-A3CJ-01	PHF10	ENST00000366780.4,ENST00000339209.4	chr6	170112481:170112635:170114828:170114938:170115803:170115938,	170114829	170114938	170114904	170114904	Frame_Shift_Del	A	-	p.L243fs
LIHC	TCGA-G3-A3CJ-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170626503	170626503	Frame_Shift_Del	T	-	p.F9fs
LIHC	TCGA-G3-A3CJ-01	FAM120B	ENST00000476287.1	chr6	170615845:170615930:170626457:170628212:170632166:170632347,	170626458	170628212	170627365	170627365	Frame_Shift_Del	T	-	p.L296fs
LIHC	TCGA-G3-A3CJ-01	FAM120B	ENST00000540480.1,ENST00000476287.1,ENST00000537664.1	chr6	170632166:170632347:170639536:170639638:170657238:170657411,	170639537	170639638	170639584	170639584	Frame_Shift_Del	G	-	p.G655fs
LIHC	TCGA-G3-A3CJ-01	PDCD2	ENST00000545869.1,ENST00000392090.2,ENST00000542896.1,ENST00000541970.1,ENST00000544866.1	chr6	170887970:170888058:170889089:170889193:170892144:170892276,	170889090	170889193	170889116	170889116	Frame_Shift_Del	T	-	p.T246fs
LIHC	TCGA-G3-A3CJ-01	FAM20C	ENST00000313766.5	chr7	195624:195732:208897:208976:286380:286473,	208898	208976	208908	208908	Frame_Shift_Del	G	-	p.S265fs
LIHC	TCGA-G3-A3CJ-01	PDGFA	ENST00000354513.5	chr7	538129:538211:540067:540136:540752:540879,	540068	540136	540111	540111	Frame_Shift_Del	T	-	p.K202fs
LIHC	TCGA-G3-A3CJ-01	PRKAR1B	ENST00000400758.2,ENST00000544935.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1	chr7	591025:591107:618892:619014:624144:624205,	618893	619014	618965	618965	Frame_Shift_Del	G	-	p.P273fs
LIHC	TCGA-G3-A3CJ-01	MICALL2	ENST00000405088.4,ENST00000413446.1,ENST00000297508.7	chr7	1480226:1480320:1481827:1482120:1484287:1484510,	1481828	1482120	1481941	1481941	Frame_Shift_Del	G	-	p.P533fs
LIHC	TCGA-G3-A3CJ-01	INTS1	ENST00000389470.4	chr7	1524733:1524838:1524925:1525162:1526260:1526410,	1524926	1525162	1525027	1525027	Frame_Shift_Del	C	-	p.D1181fs
LIHC	TCGA-G3-A3CJ-01	INTS1	ENST00000468115.1,ENST00000404767.3	chr7	1524733:1524838:1524925:1525105:1526260:1526410,	1524926	1525105	1525027	1525027	Frame_Shift_Del	C	-	p.D1181fs
LIHC	TCGA-G3-A3CJ-01	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000402746.1	chr7	2054140:2054277:2108828:2108973:2188786:2188873,	2108829	2108973	2108964	2108964	Frame_Shift_Del	C	-	p.G361fs
LIHC	TCGA-G3-A3CJ-01	SNX8	ENST00000479689.1,ENST00000222990.3	chr7	2297369:2297438:2302864:2302997:2303932:2304093,	2302865	2302997	2302934	2302934	Frame_Shift_Del	C	-	p.G282fs
LIHC	TCGA-G3-A3CJ-01	SNX8	ENST00000494722.1	chr7	2314750:2314864:2317734:2317940:2353962:2354076,	2317735	2317940	2317743	2317743	Frame_Shift_Del	A	-	p.S99fs
LIHC	TCGA-G3-A3CJ-01	BRAT1	ENST00000340611.4,ENST00000467558.1,ENST00000469750.1	chr7	2583387:2583596:2584542:2584690:2586957:2587112,	2584543	2584690	2584660	2584660	Frame_Shift_Del	C	-	p.E105fs
LIHC	TCGA-G3-A3CJ-01	SDK1	ENST00000404826.2,ENST00000389531.3	chr7	4014000:4014177:4026817:4026954:4050597:4050745,	4026818	4026954	4026949	4026949	Frame_Shift_Del	A	-	p.E709fs
LIHC	TCGA-G3-A3CJ-01	FOXK1	ENST00000328914.4	chr7	4721939:4722499:4780468:4780654:4794089:4794246,	4780469	4780654	4780546	4780546	Frame_Shift_Del	C	-	p.S213fs
LIHC	TCGA-G3-A3CJ-01	TNRC18	ENST00000399537.4,ENST00000413081.1,ENST00000430969.1	chr7	5415744:5415855:5416477:5416624:5417001:5417207,	5416478	5416624	5416579	5416579	Frame_Shift_Del	G	-	p.P837fs
LIHC	TCGA-G3-A3CJ-01	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5540924	5540924	Frame_Shift_Del	G	-	p.L326fs
LIHC	TCGA-G3-A3CJ-01	ACTB	ENST00000477812.1	chr7	5568323:5568350:5568791:5569294:5570154:5570235,	5568792	5569294	5569012	5569012	Frame_Shift_Del	C	-	p.G48fs
LIHC	TCGA-G3-A3CJ-01	RNF216	ENST00000389902.3	chr7	5778906:5778983:5780603:5781446:5792476:5792610,	5780604	5781446	5781380	5781380	Frame_Shift_Del	T	-	p.R90fs
LIHC	TCGA-G3-A3CJ-01	RSPH10B	ENST00000441023.2,ENST00000337579.3,ENST00000405415.1,ENST00000404406.1	chr7	5997537:5997658:5998623:5998709:6000321:6000495,	5998624	5998709	5998642	5998642	Frame_Shift_Del	T	-	p.K214fs
LIHC	TCGA-G3-A3CJ-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6018226:6018327:6022454:6022622:6026389:6027251,	6022455	6022622	6022571	6022571	Frame_Shift_Del	A	-	p.F686fs
LIHC	TCGA-G3-A3CJ-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6018226:6018327:6022454:6022622:6026389:6027251,	6022455	6022622	6022597	6022597	Frame_Shift_Del	T	-	p.I679fs
LIHC	TCGA-G3-A3CJ-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6026653	6026653	Frame_Shift_Del	T	-	p.K581fs
LIHC	TCGA-G3-A3CJ-01	PMS2	ENST00000441476.2,ENST00000406569.3,ENST00000265849.7	chr7	6026717:6027251:6029430:6029586:6031603:6031688,	6029431	6029586	6029529	6029529	Frame_Shift_Del	T	-	p.K349fs
LIHC	TCGA-G3-A3CJ-01	PMS2	ENST00000441476.2,ENST00000406569.3,ENST00000265849.7	chr7	6031603:6031688:6035164:6035264:6036956:6037054,	6035165	6035264	6035199	6035199	Frame_Shift_Del	A	-	p.F291fs
LIHC	TCGA-G3-A3CJ-01	PMS2	ENST00000382321.4,ENST00000406569.3,ENST00000265849.7	chr7	6038738:6038906:6042083:6042267:6043602:6043637,6038738:6038906:6042083:6042267:6043320:6043423,	6042084	6042267	6042236	6042236	Frame_Shift_Del	C	-	p.A129fs
LIHC	TCGA-G3-A3CJ-01	PMS2	ENST00000382321.4,ENST00000406569.3,ENST00000380416.5	chr7	6043602:6043689:6045522:6045662:6048627:6048650,	6045523	6045662	6045552	6045552	Frame_Shift_Del	T	-	p.N45fs
LIHC	TCGA-G3-A3CJ-01	AIMP2	ENST00000395236.2	chr7	6054776:6054983:6057444:6057676:6062933:6063326,6048946:6049129:6057444:6057676:6062933:6063326,	6057445	6057676	6057622	6057622	Frame_Shift_Del	A	-	p.K175fs
LIHC	TCGA-G3-A3CJ-01	RAC1	ENST00000356142.4	chr7	6431554:6431672:6438292:6438349:6439756:6439819,	6438293	6438349	6438327	6438327	Frame_Shift_Del	G	-	p.R87fs
LIHC	TCGA-G3-A3CJ-01	DAGLB	ENST00000436575.1,ENST00000421761.2,ENST00000425398.2,ENST00000454738.1,ENST00000428902.2,ENST00000297056.6	chr7	6461357:6461435:6464382:6464466:6465618:6465745,	6464383	6464466	6464447	6464447	Frame_Shift_Del	A	-	p.L359fs
LIHC	TCGA-G3-A3CJ-01	C7orf26	ENST00000472693.1,ENST00000344417.5	chr7	6634065:6634231:6639459:6639987:6641731:6641771,	6639460	6639987	6639508	6639508	Frame_Shift_Del	T	-	p.I210fs
LIHC	TCGA-G3-A3CJ-01	C7orf26	ENST00000472693.1,ENST00000344417.5	chr7	6634065:6634231:6639459:6639987:6641731:6641771,	6639460	6639987	6639648	6639648	Frame_Shift_Del	A	-	p.K259fs
LIHC	TCGA-G3-A3CJ-01	RSPH10B2	ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6819240:6819355:6820439:6820519:6820958:6821107,	6820440	6820519	6820467	6820467	Frame_Shift_Del	T	-	p.C519fs
LIHC	TCGA-G3-A3CJ-01	RSPH10B2	ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6819240:6819355:6820439:6820519:6820958:6821107,	6820440	6820519	6820473	6820473	Frame_Shift_Del	A	-	p.T521fs
LIHC	TCGA-G3-A3CJ-01	COL28A1	ENST00000399429.3,ENST00000435823.1,ENST00000444268.1	chr7	7472103:7472172:7472262:7472331:7476025:7476094,	7472263	7472331	7472303	7472303	Frame_Shift_Del	C	-	p.G630fs
LIHC	TCGA-G3-A3CJ-01	RPA3	ENST00000396682.2,ENST00000223129.4	chr7	7677494:7677603:7678700:7678775:7679950:7680208,	7678701	7678775	7678726	7678726	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-G3-A3CJ-01	ICA1	ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8178472:8178511:8178614:8178677:8181394:8181447,	8178615	8178677	8178663	8178663	Frame_Shift_Del	T	-	p.S324fs
LIHC	TCGA-G3-A3CJ-01	ICA1	ENST00000430867.1,ENST00000446305.1,ENST00000265577.7	chr7	8268271:8268303:8272219:8272382:8275539:8275556,	8272220	8272382	8272332	8272332	Frame_Shift_Del	T	-	p.N24fs
LIHC	TCGA-G3-A3CJ-01	ICA1	ENST00000447326.1,ENST00000407906.1,ENST00000402384.3,ENST00000455539.1,ENST00000457755.1,ENST00000422063.2,ENST00000396675.3,ENST00000406470.2,ENST00000339809.6	chr7	8268271:8268303:8272219:8272385:8275539:8275556,	8272220	8272385	8272332	8272332	Frame_Shift_Del	T	-	p.N24fs
LIHC	TCGA-G3-A3CJ-01	ICA1	ENST00000317367.5,ENST00000401396.1	chr7	8268271:8268303:8272219:8272363:8275539:8275556,	8272220	8272363	8272332	8272332	Frame_Shift_Del	T	-	p.N24fs
LIHC	TCGA-G3-A3CJ-01	PHF14	ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11068307:11068445:11075266:11075413:11076044:11076315,	11075267	11075413	11075328	11075328	Frame_Shift_Del	G	-	p.W506fs
LIHC	TCGA-G3-A3CJ-01	SCIN	ENST00000445618.2,ENST00000297029.5,ENST00000519209.1	chr7	12679971:12680142:12683762:12683940:12684208:12684330,	12683763	12683940	12683800	12683800	Frame_Shift_Del	T	-	p.V540fs
LIHC	TCGA-G3-A3CJ-01	AGR2	ENST00000401412.1,ENST00000419304.2,ENST00000450569.1,ENST00000419572.2	chr7	16834561:16834643:16837254:16837318:16839367:16839441,	16837255	16837318	16837265	16837265	Frame_Shift_Del	A	-	p.I128fs
LIHC	TCGA-G3-A3CJ-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409389.1,ENST00000409076.2	chr7	17854456:17854567:17855804:17855912:17861131:17861271,	17855805	17855912	17855827	17855827	Frame_Shift_Del	T	-	p.K655fs
LIHC	TCGA-G3-A3CJ-01	HDAC9	ENST00000456174.2,ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000405010.3,ENST00000523867.1	chr7	18633530:18633652:18668972:18669104:18674249:18674365,	18668973	18669104	18669061	18669061	Frame_Shift_Del	A	-	p.G248fs
LIHC	TCGA-G3-A3CJ-01	TWISTNB	ENST00000222567.5	chr7	19738187:19738350:19739694:19739903:19744401:19744543,	19739695	19739903	19739709	19739709	Frame_Shift_Del	T	-	p.K197fs
LIHC	TCGA-G3-A3CJ-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20197984	20197984	Frame_Shift_Del	A	-	p.L667fs
LIHC	TCGA-G3-A3CJ-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198528	20198528	Frame_Shift_Del	A	-	p.C486fs
LIHC	TCGA-G3-A3CJ-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199658	20199658	Frame_Shift_Del	T	-	p.N109fs
LIHC	TCGA-G3-A3CJ-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20444250:20444476:20445684:20445794:20449237:20449401,	20445685	20445794	20445743	20445743	Frame_Shift_Del	A	-	p.K658fs
LIHC	TCGA-G3-A3CJ-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20691042:20691246:20698128:20698299:20721127:20721289,	20698129	20698299	20698151	20698151	Frame_Shift_Del	A	-	p.E520fs
LIHC	TCGA-G3-A3CJ-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20739447:20739552:20739680:20739758:20744346:20744430,	20739681	20739758	20739709	20739709	Frame_Shift_Del	T	-	p.I763fs
LIHC	TCGA-G3-A3CJ-01	ABCB5	ENST00000441315.1,ENST00000404938.2,ENST00000258738.6	chr7	20767937:20768078:20778605:20778762:20782499:20782697,	20778606	20778762	20778608	20778608	Frame_Shift_Del	T	-	p.V957fs
LIHC	TCGA-G3-A3CJ-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21609686:21609917:21611423:21611591:21621522:21621639,	21611424	21611591	21611484	21611484	Frame_Shift_Del	A	-	p.K496fs
LIHC	TCGA-G3-A3CJ-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21695449:21695599:21698415:21698649:21721163:21721295,	21698416	21698649	21698641	21698641	Frame_Shift_Del	A	-	p.K1780fs
LIHC	TCGA-G3-A3CJ-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21908481:21908609:21912891:21913119:21920319:21920511,	21912892	21913119	21913075	21913075	Frame_Shift_Del	G	-	p.G4058fs
LIHC	TCGA-G3-A3CJ-01	CDCA7L	ENST00000447180.1	chr7	21948038:21948125:21951234:21951369:21956371:21956512,	21951235	21951369	21951260	21951260	Frame_Shift_Del	T	-	p.N93fs
LIHC	TCGA-G3-A3CJ-01	CDCA7L	ENST00000356195.5,ENST00000435031.1,ENST00000406877.3	chr7	21948038:21948125:21951234:21951372:21956371:21956512,	21951235	21951372	21951260	21951260	Frame_Shift_Del	T	-	p.N93fs
LIHC	TCGA-G3-A3CJ-01	RAPGEF5	ENST00000458533.1,ENST00000420196.1,ENST00000344041.6	chr7	22206687:22206766:22232984:22233073:22233532:22233651,	22232985	22233073	22233038	22233038	Frame_Shift_Del	A	-	p.L231fs
LIHC	TCGA-G3-A3CJ-01	STEAP1B	ENST00000406890.2	chr7	22532295:22532348:22532942:22533398:22534390:22534505,	22532943	22533398	22533282	22533282	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-G3-A3CJ-01	STEAP1B	ENST00000483679.1,ENST00000424363.1,ENST00000439708.1,ENST00000404369.4	chr7	22532295:22532348:22532942:22533455:22534390:22534505,	22532943	22533455	22533282	22533282	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-G3-A3CJ-01	FAM126A	ENST00000409923.1,ENST00000432176.2,ENST00000440481.1	chr7	23016959:23017040:23017887:23018067:23023562:23023664,	23017888	23018067	23017918	23017918	Frame_Shift_Del	A	-	p.I101fs
LIHC	TCGA-G3-A3CJ-01	FAM126A	ENST00000409763.1,ENST00000409923.1,ENST00000432176.2	chr7	23017887:23018067:23023562:23023664:23053543:23053693,23017887:23018067:23023562:23023664:23030679:23030758,	23023563	23023664	23023624	23023624	Frame_Shift_Del	A	-	p.L31fs
LIHC	TCGA-G3-A3CJ-01	TRA2A	ENST00000474586.1,ENST00000538367.1,ENST00000494255.1,ENST00000297071.4,ENST00000392502.4	chr7	23547039:23547154:23552512:23552701:23555981:23556081,	23552513	23552701	23552666	23552666	Frame_Shift_Del	A	-	p.F124fs
LIHC	TCGA-G3-A3CJ-01	CCDC126	ENST00000409765.1	chr7	23637585:23637670:23650789:23651172:23682549:23682555,23637133:23637224:23650789:23651172:23682549:23682555,	23650790	23651172	23650938	23650938	Frame_Shift_Del	T	-	p.F3fs
LIHC	TCGA-G3-A3CJ-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775401	23775401	Frame_Shift_Del	G	-	p.W220fs
LIHC	TCGA-G3-A3CJ-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232114:26232197:26232870:26232993:26233194:26233314,	26232871	26232993	26232885	26232885	Frame_Shift_Del	C	-	p.G329fs
LIHC	TCGA-G3-A3CJ-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26246104	26246104	Frame_Shift_Del	T	-	p.Y47fs
LIHC	TCGA-G3-A3CJ-01	SKAP2	ENST00000345317.2,ENST00000539623.1	chr7	26709709:26709811:26724354:26724467:26729903:26729981,	26724355	26724467	26724431	26724431	Frame_Shift_Del	C	-	p.G304fs
LIHC	TCGA-G3-A3CJ-01	TAX1BP1	ENST00000543117.1,ENST00000265393.6,ENST00000416801.2,ENST00000433216.2	chr7	27839583:27839709:27855967:27856013:27856508:27856657,	27855968	27856013	27855987	27855987	Frame_Shift_Del	A	-	p.E595fs
LIHC	TCGA-G3-A3CJ-01	TAX1BP1	ENST00000396319.2	chr7	27839583:27839709:27855967:27856139:27856508:27856657,	27855968	27856139	27855987	27855987	Frame_Shift_Del	A	-	p.E595fs
LIHC	TCGA-G3-A3CJ-01	CPVL	ENST00000432534.1	chr7	29070210:29070375:29103676:29103850:29105638:29105737,29070210:29070375:29103676:29103850:29111388:29111461,	29103677	29103850	29103816	29103816	Frame_Shift_Del	A	-	p.L333fs
LIHC	TCGA-G3-A3CJ-01	CPVL	ENST00000409850.1,ENST00000448959.1,ENST00000396276.3,ENST00000265394.5	chr7	29111388:29111520:29111916:29112039:29126099:29126166,	29111917	29112039	29111923	29111923	Frame_Shift_Del	G	-	p.P242fs
LIHC	TCGA-G3-A3CJ-01	CHN2	ENST00000439384.1,ENST00000539406.1	chr7	29186247:29186361:29186464:29186576:29394240:29394279,	29186465	29186576	29186527	29186527	Frame_Shift_Del	A	-	p.L75fs
LIHC	TCGA-G3-A3CJ-01	CHN2	ENST00000474070.1,ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000546235.1	chr7	29437988:29438102:29440158:29440444:29519894:29519972,	29440159	29440444	29440208	29440208	Frame_Shift_Del	T	-	p.F114fs
LIHC	TCGA-G3-A3CJ-01	PLEKHA8	ENST00000396259.1,ENST00000396257.2,ENST00000449726.1,ENST00000258679.7,ENST00000440706.2	chr7	30090049:30090090:30092324:30092482:30094324:30094481,	30092325	30092482	30092327	30092327	Frame_Shift_Del	A	-	p.Q214fs
LIHC	TCGA-G3-A3CJ-01	NOD1	ENST00000467706.1,ENST00000222823.4	chr7	30464824:30465326:30468989:30469073:30485756:30485840,30464824:30465326:30468989:30469073:30472711:30472795,	30468990	30469073	30469043	30469043	Frame_Shift_Del	C	-	p.G912fs
LIHC	TCGA-G3-A3CJ-01	LSM5	ENST00000223084.3,ENST00000409952.3,ENST00000409782.1,ENST00000409909.3,ENST00000409292.1,ENST00000450169.2,ENST00000410044.1	chr7	32526674:32526905:32527296:32527369:32528236:32528264,	32527297	32527369	32527307	32527307	Frame_Shift_Del	T	-	p.N78fs
LIHC	TCGA-G3-A3CJ-01	AVL9	ENST00000404479.1,ENST00000446718.1,ENST00000318709.4,ENST00000409301.1	chr7	32588458:32588530:32590945:32591035:32591840:32591862,	32590946	32591035	32591022	32591022	Frame_Shift_Del	T	-	p.I150fs
LIHC	TCGA-G3-A3CJ-01	BBS9	ENST00000350941.3	chr7	33388679:33388782:33397466:33397607:33407378:33407474,	33397467	33397607	33397553	33397553	Frame_Shift_Del	A	-	p.K547fs
LIHC	TCGA-G3-A3CJ-01	BBS9	ENST00000354265.4,ENST00000242067.6,ENST00000434373.1,ENST00000350941.3,ENST00000433714.1,ENST00000396127.2,ENST00000355070.2	chr7	33427603:33427756:33545074:33545257:33573565:33573788,	33545075	33545257	33545225	33545225	Frame_Shift_Del	T	-	p.F756fs
LIHC	TCGA-G3-A3CJ-01	NPSR1	ENST00000396095.2	chr7	34724163:34724296:34818073:34818177:34851381:34851475,34724163:34724296:34818073:34818177:34867012:34867214,	34818074	34818177	34818090	34818090	Frame_Shift_Del	G	-	p.L99fs
LIHC	TCGA-G3-A3CJ-01	HERPUD2	ENST00000396081.1,ENST00000426180.1,ENST00000311350.3	chr7	35673921:35674039:35674744:35675068:35677959:35678082,	35674745	35675068	35675025	35675025	Frame_Shift_Del	T	-	p.T221fs
LIHC	TCGA-G3-A3CJ-01	SEPT7	ENST00000350320.6,ENST00000425198.1,ENST00000399035.3,ENST00000435235.1,ENST00000399034.2,ENST00000494488.2	chr7	35922093:35922186:35923500:35923597:35925437:35925489,	35923501	35923597	35923559	35923559	Frame_Shift_Del	G	-	p.R247fs
LIHC	TCGA-G3-A3CJ-01	KIAA0895	ENST00000297063.6,ENST00000436884.1,ENST00000338533.5,ENST00000440378.1,ENST00000453212.1,ENST00000317020.6	chr7	36370590:36370688:36373464:36373770:36374654:36374787,	36373465	36373770	36373623	36373623	Frame_Shift_Del	A	-	p.L332fs
LIHC	TCGA-G3-A3CJ-01	ANLN	ENST00000441696.1,ENST00000265748.2,ENST00000396068.2	chr7	36450122:36450313:36450667:36450775:36455366:36455392,	36450668	36450775	36450748	36450748	Frame_Shift_Del	A	-	p.S456fs
LIHC	TCGA-G3-A3CJ-01	ANLN	ENST00000396068.2	chr7	36450667:36450775:36455366:36455493:36456688:36456757,36450667:36450775:36455366:36455493:36458852:36459076,	36455367	36455493	36455394	36455394	Frame_Shift_Del	A	-	p.K476fs
LIHC	TCGA-G3-A3CJ-01	AOAH	ENST00000535891.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36561644:36561721:36570023:36570120:36571752:36571812,	36570024	36570120	36570087	36570087	Frame_Shift_Del	T	-	p.I487fs
LIHC	TCGA-G3-A3CJ-01	ELMO1	ENST00000448602.1,ENST00000310758.4,ENST00000442504.1,ENST00000420636.1,ENST00000433246.1	chr7	37136282:37136332:37172734:37172839:37250990:37251122,	37172735	37172839	37172765	37172765	Frame_Shift_Del	A	-	p.F387fs
LIHC	TCGA-G3-A3CJ-01	ELMO1	ENST00000310758.4,ENST00000463390.1	chr7	37355523:37355564:37382216:37382367:37488277:37488459,	37382217	37382367	37382225	37382225	Frame_Shift_Del	T	-	p.I24fs
LIHC	TCGA-G3-A3CJ-01	EPDR1	ENST00000199448.4,ENST00000559325.1	chr7	37960921:37961053:37988441:37988650:37989801:37989888,37960259:37960810:37988441:37988650:37989801:37989888,	37988442	37988650	37988589	37988589	Frame_Shift_Del	C	-	p.I139fs
LIHC	TCGA-G3-A3CJ-01	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379542	39379542	Frame_Shift_Del	C	-	p.S271fs
LIHC	TCGA-G3-A3CJ-01	POU6F2	ENST00000416452.1	chr7	39472675:39472882:39500145:39500314:39503780:39504309,	39500146	39500314	39500213	39500213	Frame_Shift_Del	T	-	p.A490fs
LIHC	TCGA-G3-A3CJ-01	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027447	40027447	Frame_Shift_Del	A	-	p.A487fs
LIHC	TCGA-G3-A3CJ-01	CDK13	ENST00000340829.5	chr7	39990108:39991451:40027197:40027857:40037092:40037263,	40027198	40027857	40027582	40027582	Frame_Shift_Del	A	-	p.L532fs
LIHC	TCGA-G3-A3CJ-01	HECW1	ENST00000453890.1,ENST00000395891.2	chr7	43508518:43508704:43519208:43519343:43531673:43531779,	43519209	43519343	43519253	43519253	Frame_Shift_Del	C	-	p.D1048fs
LIHC	TCGA-G3-A3CJ-01	STK17A	ENST00000462448.1,ENST00000319357.5	chr7	43635499:43635712:43647854:43647999:43659195:43659322,	43647855	43647999	43647961	43647961	Frame_Shift_Del	T	-	p.F176fs
LIHC	TCGA-G3-A3CJ-01	COA1	ENST00000415076.2,ENST00000415798.1,ENST00000310564.6,ENST00000395879.1,ENST00000223336.6,ENST00000438444.1,ENST00000446564.1,ENST00000446330.2,ENST00000431651.1,ENST00000395880.3	chr7	43684849:43684998:43687133:43687233:43688198:43688251,	43687134	43687233	43687159	43687159	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-G3-A3CJ-01	POLM	ENST00000335195.6	chr7	44113996:44114129:44116107:44116228:44118338:44118410,44113996:44114129:44116107:44116228:44117920:44118037,44113996:44114129:44116107:44116228:44118354:44118410,44113996:44114121:44116107:44116228:44118338:44118410,	44116108	44116228	44116135	44116135	Frame_Shift_Del	G	-	p.Q270fs
LIHC	TCGA-G3-A3CJ-01	CAMK2B	ENST00000497584.1,ENST00000395749.2,ENST00000440254.2,ENST00000347193.4,ENST00000523845.1,ENST00000350811.3,ENST00000433930.1,ENST00000502837.2	chr7	44274237:44274275:44279187:44279262:44280305:44280348,	44279188	44279262	44279201	44279201	Frame_Shift_Del	C	-	p.G336fs
LIHC	TCGA-G3-A3CJ-01	NUDCD3	ENST00000464812.1,ENST00000355451.7	chr7	44444111:44444182:44467169:44467302:44524566:44524873,	44467170	44467302	44467279	44467279	Frame_Shift_Del	T	-	p.N178fs
LIHC	TCGA-G3-A3CJ-01	NPC1L1	ENST00000289547.4,ENST00000381160.3	chr7	44561650:44561841:44571353:44571443:44571678:44571816,	44571354	44571443	44571425	44571425	Frame_Shift_Del	G	-	p.L856fs
LIHC	TCGA-G3-A3CJ-01	NPC1L1	ENST00000289547.4,ENST00000381160.3	chr7	44571353:44571443:44571678:44571816:44573029:44573077,	44571679	44571816	44571712	44571712	Frame_Shift_Del	G	-	p.P838fs
LIHC	TCGA-G3-A3CJ-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000439616.2,ENST00000543843.1,ENST00000447398.1,ENST00000449767.1	chr7	44715568:44715748:44721318:44721447:44733423:44733603,	44721319	44721447	44721340	44721340	Frame_Shift_Del	G	-	p.G410fs
LIHC	TCGA-G3-A3CJ-01	ZMIZ2	ENST00000309315.4,ENST00000416856.1	chr7	44788560:44788590:44795786:44795898:44796023:44796138,	44795787	44795898	44795882	44795882	Frame_Shift_Del	C	-	p.P13fs
LIHC	TCGA-G3-A3CJ-01	ZMIZ2	ENST00000309315.4,ENST00000478045.1,ENST00000433667.1,ENST00000413916.1,ENST00000441627.1,ENST00000463056.1,ENST00000265346.7	chr7	44804933:44805178:44805762:44805932:44806019:44806153,	44805763	44805932	44805844	44805844	Frame_Shift_Del	C	-	p.T775fs
LIHC	TCGA-G3-A3CJ-01	CCM2	ENST00000488727.1,ENST00000544363.1,ENST00000258781.6	chr7	45066613:45066865:45077851:45078025:45103516:45103600,45067299:45067396:45077851:45078025:45108041:45108178,45067299:45067396:45077851:45078025:45103516:45103600,45039847:45039962:45077851:45078025:45103516:45103600,	45077852	45078025	45077882	45077882	Frame_Shift_Del	T	-	p.F42fs
LIHC	TCGA-G3-A3CJ-01	CCM2	ENST00000488727.1,ENST00000544363.1,ENST00000258781.6	chr7	45066613:45066865:45077851:45078025:45103516:45103600,45067299:45067396:45077851:45078025:45108041:45108178,45067299:45067396:45077851:45078025:45103516:45103600,45039847:45039962:45077851:45078025:45103516:45103600,	45077852	45078025	45077887	45077887	Frame_Shift_Del	A	-	p.L43fs
LIHC	TCGA-G3-A3CJ-01	CCM2	ENST00000482714.1,ENST00000472223.1,ENST00000475551.1,ENST00000488727.1,ENST00000381112.3,ENST00000258781.6,ENST00000541586.1,ENST00000461377.1	chr7	45077859:45078025:45108041:45108178:45109424:45109560,45104201:45104245:45108041:45108178:45109424:45109560,	45108042	45108178	45108067	45108067	Frame_Shift_Del	C	-	p.S160fs
LIHC	TCGA-G3-A3CJ-01	TBRG4	ENST00000361278.3,ENST00000395655.4	chr7	45141945:45142090:45142931:45143042:45145039:45145077,	45142932	45143042	45143006	45143006	Frame_Shift_Del	G	-	p.H368fs
LIHC	TCGA-G3-A3CJ-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000355730.3,ENST00000457718.1	chr7	47384521:47384636:47385784:47385954:47407961:47408799,	47385785	47385954	47385878	47385878	Frame_Shift_Del	C	-	p.G786fs
LIHC	TCGA-G3-A3CJ-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000457718.1	chr7	47385784:47385954:47407961:47409218:47436396:47436501,	47407962	47409218	47408682	47408682	Frame_Shift_Del	G	-	p.L521fs
LIHC	TCGA-G3-A3CJ-01	SUN3	ENST00000473723.1	chr7	48033911:48034079:48035627:48035743:48039724:48039778,	48035628	48035743	48035688	48035688	Frame_Shift_Del	T	-	p.K199fs
LIHC	TCGA-G3-A3CJ-01	ABCA13	ENST00000453246.1,ENST00000435803.1	chr7	48494659:48494883:48506552:48506642:48511126:48511196,	48506553	48506642	48506557	48506557	Frame_Shift_Del	G	-	p.G4275fs
LIHC	TCGA-G3-A3CJ-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48556320:48556477:48559636:48559890:48563843:48564036,	48559637	48559890	48559680	48559680	Frame_Shift_Del	T	-	p.I4614fs
LIHC	TCGA-G3-A3CJ-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50530910:50531129:50534911:50535013:50537770:50537869,	50534912	50535013	50534921	50534921	Frame_Shift_Del	A	-	p.F411fs
LIHC	TCGA-G3-A3CJ-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50530910:50531129:50534911:50535013:50537770:50537869,	50534912	50535013	50534980	50534980	Frame_Shift_Del	C	-	p.V392fs
LIHC	TCGA-G3-A3CJ-01	GRB10	ENST00000401949.1,ENST00000402578.1,ENST00000439599.1,ENST00000402497.1,ENST00000473696.1,ENST00000335866.3,ENST00000398810.2,ENST00000398812.2,ENST00000403097.1,ENST00000407526.1,ENST00000406641.1,ENST00000357271.5	chr7	50671694:50671782:50672007:50672074:50672986:50673103,	50672008	50672074	50672032	50672032	Frame_Shift_Del	G	-	p.L472fs
LIHC	TCGA-G3-A3CJ-01	COBL	ENST00000265136.7,ENST00000441453.1,ENST00000395540.2,ENST00000452534.1	chr7	51152862:51153001:51203854:51204028:51251798:51251896,	51203855	51204028	51204011	51204011	Frame_Shift_Del	G	-	p.P292fs
LIHC	TCGA-G3-A3CJ-01	LANCL2	ENST00000452107.2,ENST00000254770.2	chr7	55459485:55459603:55466115:55466323:55467649:55467797,	55466116	55466323	55466252	55466252	Frame_Shift_Del	C	-	p.G153fs
LIHC	TCGA-G3-A3CJ-01	VOPP1	ENST00000285279.5,ENST00000414113.1,ENST00000428097.1,ENST00000545390.1,ENST00000452832.1,ENST00000418904.1,ENST00000433959.1,ENST00000453112.1,ENST00000462326.1,ENST00000428648.1,ENST00000417399.1,ENST00000427700.1,ENST00000455023.1,ENST00000481197.1	chr7	55560078:55560111:55565305:55565383:55588764:55588823,	55565306	55565383	55565334	55565334	Frame_Shift_Del	G	-	p.L55fs
LIHC	TCGA-G3-A3CJ-01	SUMF2	ENST00000451338.1	chr7	56140701:56140804:56141806:56141911:56142278:56142332,	56141807	56141911	56141900	56141900	Frame_Shift_Del	T	-	p.F144fs
LIHC	TCGA-G3-A3CJ-01	SUMF2	ENST00000437307.2	chr7	56140701:56140804:56141866:56141911:56142278:56142332,56140701:56140804:56141866:56141911:56144526:56144582,56140701:56140804:56141866:56141911:56145794:56145879,	56141867	56141911	56141900	56141900	Frame_Shift_Del	T	-	p.F144fs
LIHC	TCGA-G3-A3CJ-01	SUMF2	ENST00000413952.2,ENST00000434526.2,ENST00000395436.2,ENST00000452216.1,ENST00000275607.9,ENST00000413756.1,ENST00000342190.6,ENST00000451338.1	chr7	56141866:56141911:56144526:56144582:56145794:56145879,56140701:56140804:56144526:56144582:56145794:56145879,56136174:56136331:56144526:56144582:56145794:56145879,56142278:56142429:56144526:56144582:56145794:56145879,	56144527	56144582	56144542	56144542	Frame_Shift_Del	G	-	p.W203fs
LIHC	TCGA-G3-A3CJ-01	SUMF2	ENST00000531229.1,ENST00000434526.2,ENST00000395436.2,ENST00000452216.1,ENST00000275607.9,ENST00000395435.2,ENST00000438133.1,ENST00000437307.2,ENST00000436782.1,ENST00000451338.1,ENST00000423763.1	chr7	56145794:56145879:56146056:56146201:56147220:56147260,	56146057	56146201	56146073	56146073	Frame_Shift_Del	G	-	p.L250fs
LIHC	TCGA-G3-A3CJ-01	CHCHD2	ENST00000473095.1	chr7	56170559:56170704:56171918:56172168:56174056:56174124,	56171919	56172168	56171971	56171971	Frame_Shift_Del	C	-	p.G83fs
LIHC	TCGA-G3-A3CJ-01	GUSB	ENST00000446111.1	chr7	65441136:65441189:65444372:65444528:65445210:65445396,	65444373	65444528	65444484	65444484	Frame_Shift_Del	A	-	p.F209fs
LIHC	TCGA-G3-A3CJ-01	GUSB	ENST00000304895.4,ENST00000345660.6	chr7	65441136:65441189:65444385:65444528:65445210:65445396,65441001:65441189:65444385:65444528:65444820:65444898,65441001:65441189:65444385:65444528:65444713:65444898,	65444386	65444528	65444484	65444484	Frame_Shift_Del	A	-	p.F209fs
LIHC	TCGA-G3-A3CJ-01	GUSB	ENST00000304895.4,ENST00000345660.6,ENST00000478118.1	chr7	65444464:65444528:65444713:65444898:65445210:65445392,	65444714	65444898	65444815	65444815	Frame_Shift_Del	C	-	p.G160fs
LIHC	TCGA-G3-A3CJ-01	ASL	ENST00000395331.3,ENST00000395332.3,ENST00000304874.9,ENST00000362000.5	chr7	65551571:65551649:65551730:65551808:65552320:65552373,	65551731	65551808	65551798	65551798	Frame_Shift_Del	C	-	p.P198fs
LIHC	TCGA-G3-A3CJ-01	KCTD7	ENST00000443322.1	chr7	66093944:66094195:66098261:66098431:66103239:66103378,	66098262	66098431	66098281	66098281	Frame_Shift_Del	T	-	p.L55fs
LIHC	TCGA-G3-A3CJ-01	TYW1	ENST00000359626.5,ENST00000361660.4	chr7	66474569:66474671:66479353:66479548:66482839:66482868,	66479354	66479548	66479363	66479363	Frame_Shift_Del	A	-	p.K129fs
LIHC	TCGA-G3-A3CJ-01	TYW1	ENST00000361660.4	chr7	66514935:66515053:66532271:66532390:66548416:66548526,	66532272	66532390	66532284	66532284	Frame_Shift_Del	G	-	p.G390fs
LIHC	TCGA-G3-A3CJ-01	TYW1	ENST00000359626.5,ENST00000495971.1,ENST00000361660.4	chr7	66648112:66648223:66660156:66660324:66703294:66703627,	66660157	66660324	66660261	66660261	Frame_Shift_Del	C	-	p.I638fs
LIHC	TCGA-G3-A3CJ-01	AUTS2	ENST00000406775.2,ENST00000418686.1,ENST00000342771.4	chr7	70250940:70251024:70252194:70252417:70254733:70254912,	70252195	70252417	70252380	70252380	Frame_Shift_Del	A	-	p.K832fs
LIHC	TCGA-G3-A3CJ-01	NSUN5	ENST00000428206.1,ENST00000471461.1,ENST00000310326.8,ENST00000438747.2,ENST00000252594.6	chr7	72718955:72719094:72721390:72721499:72721579:72721640,	72721391	72721499	72721430	72721430	Frame_Shift_Del	A	-	p.F116fs
LIHC	TCGA-G3-A3CJ-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892124	72892124	Frame_Shift_Del	T	-	p.K557fs
LIHC	TCGA-G3-A3CJ-01	STX1A	ENST00000222812.3	chr7	73114645:73114814:73115059:73115170:73117174:73117312,	73115060	73115170	73115068	73115068	Frame_Shift_Del	C	-	p.A261fs
LIHC	TCGA-G3-A3CJ-01	STX1A	ENST00000395156.3	chr7	73114645:73114814:73115059:73115124:73117174:73117312,	73115060	73115124	73115068	73115068	Frame_Shift_Del	C	-	p.A261fs
LIHC	TCGA-G3-A3CJ-01	STX1A	ENST00000480126.1	chr7	73114645:73114814:73115059:73115261:73117174:73117312,	73115060	73115261	73115068	73115068	Frame_Shift_Del	C	-	p.A261fs
LIHC	TCGA-G3-A3CJ-01	LIMK1	ENST00000435201.1	chr7	73520406:73520573:73521400:73521523:73522200:73522287,	73521401	73521523	73521482	73521482	Frame_Shift_Del	G	-	p.G372fs
LIHC	TCGA-G3-A3CJ-01	LIMK1	ENST00000538333.3,ENST00000418310.1,ENST00000336180.2,ENST00000483414.1	chr7	73520406:73520573:73521339:73521523:73522200:73522287,	73521340	73521523	73521482	73521482	Frame_Shift_Del	G	-	p.G372fs
LIHC	TCGA-G3-A3CJ-01	EIF4H	ENST00000265753.8,ENST00000495187.1	chr7	73604151:73604248:73604576:73604636:73609070:73609135,	73604577	73604636	73604619	73604619	Frame_Shift_Del	G	-	p.R151fs
LIHC	TCGA-G3-A3CJ-01	CLIP2	ENST00000395060.1,ENST00000223398.6,ENST00000361545.5	chr7	73731876:73731997:73752777:73753334:73768209:73768238,	73752778	73753334	73752899	73752899	Frame_Shift_Del	G	-	p.V81fs
LIHC	TCGA-G3-A3CJ-01	NCF1	ENST00000289473.4,ENST00000398421.2	chr7	74197867:74197975:74199527:74199645:74202327:74202432,	74199528	74199645	74199625	74199625	Frame_Shift_Del	G	-	p.L260fs
LIHC	TCGA-G3-A3CJ-01	GTF2IRD2	ENST00000405086.2,ENST00000457594.2,ENST00000361071.5,ENST00000453619.2	chr7	74237151:74237335:74239461:74239581:74247927:74248066,	74239462	74239581	74239558	74239558	Frame_Shift_Del	C	-	p.V88fs
LIHC	TCGA-G3-A3CJ-01	POR	ENST00000419840.1,ENST00000461988.1,ENST00000394893.1	chr7	75609676:75609806:75610365:75610490:75610834:75610924,	75610366	75610490	75610426	75610426	Frame_Shift_Del	A	-	p.K193fs
LIHC	TCGA-G3-A3CJ-01	STYXL1	ENST00000248600.1,ENST00000454618.1,ENST00000359697.3,ENST00000451157.1,ENST00000431581.1	chr7	75633075:75633173:75634576:75634722:75643059:75643205,	75634577	75634722	75634601	75634601	Frame_Shift_Del	T	-	p.N192fs
LIHC	TCGA-G3-A3CJ-01	STYXL1	ENST00000248600.1,ENST00000454618.1,ENST00000359697.3,ENST00000451157.1,ENST00000431581.1	chr7	75634576:75634722:75643059:75643205:75651168:75651283,	75643060	75643205	75643144	75643144	Frame_Shift_Del	G	-	p.P123fs
LIHC	TCGA-G3-A3CJ-01	ZP3	ENST00000336517.4,ENST00000394857.3	chr7	76054368:76054593:76058831:76058950:76062243:76062347,	76058832	76058950	76058945	76058945	Frame_Shift_Del	C	-	p.Y91fs
LIHC	TCGA-G3-A3CJ-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76111993	76111993	Frame_Shift_Del	C	-	p.A146fs
LIHC	TCGA-G3-A3CJ-01	CCDC146	ENST00000474733.1	chr7	76911908:76912102:76916114:76916172:76916756:76916894,	76916115	76916172	76916162	76916162	Frame_Shift_Del	A	-	p.V732fs
LIHC	TCGA-G3-A3CJ-01	CCDC146	ENST00000461259.1,ENST00000415740.2,ENST00000285871.4,ENST00000431197.1	chr7	76911908:76912102:76916114:76916243:76916756:76916894,	76916115	76916243	76916162	76916162	Frame_Shift_Del	A	-	p.V732fs
LIHC	TCGA-G3-A3CJ-01	CCDC146	ENST00000478101.1,ENST00000461259.1,ENST00000415740.2,ENST00000285871.4,ENST00000431197.1	chr7	76916756:76916894:76922268:76922517:76923979:76924232,	76922269	76922517	76922444	76922444	Frame_Shift_Del	A	-	p.E864fs
LIHC	TCGA-G3-A3CJ-01	PHTF2	ENST00000454592.1,ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2	chr7	77551939:77552095:77558425:77558644:77569346:77569619,77551939:77552095:77558425:77558644:77567026:77567155,	77558426	77558644	77558435	77558435	Frame_Shift_Del	A	-	p.K343fs
LIHC	TCGA-G3-A3CJ-01	PHTF2	ENST00000307305.8,ENST00000422959.2,ENST00000275575.7,ENST00000248550.7,ENST00000424760.1,ENST00000416283.2	chr7	77558469:77558644:77567026:77567155:77569346:77569619,	77567027	77567155	77567067	77567067	Frame_Shift_Del	A	-	p.E426fs
LIHC	TCGA-G3-A3CJ-01	PHTF2	ENST00000470215.1,ENST00000307305.8,ENST00000422959.2,ENST00000248550.7,ENST00000416283.2	chr7	77572016:77572103:77578994:77579150:77580933:77581029,	77578995	77579150	77579071	77579071	Frame_Shift_Del	T	-	p.L645fs
LIHC	TCGA-G3-A3CJ-01	PHTF2	ENST00000470215.1,ENST00000307305.8,ENST00000422959.2,ENST00000248550.7,ENST00000416283.2	chr7	77572016:77572103:77578994:77579150:77580933:77581029,	77578995	77579150	77579112	77579112	Frame_Shift_Del	A	-	p.K660fs
LIHC	TCGA-G3-A3CJ-01	MAGI2	ENST00000354212.4,ENST00000519748.1,ENST00000536571.1,ENST00000520379.1,ENST00000535697.1,ENST00000522391.1,ENST00000419488.1	chr7	77975238:77975360:77998472:77998530:78119077:78119157,	77998473	77998530	77998507	77998507	Frame_Shift_Del	T	-	p.I357fs
LIHC	TCGA-G3-A3CJ-01	CD36	ENST00000419819.2,ENST00000394788.3,ENST00000432207.1,ENST00000435819.1,ENST00000433696.2,ENST00000538969.1,ENST00000447544.2,ENST00000309881.7,ENST00000534394.1,ENST00000544133.1	chr7	80301280:80301356:80302085:80302159:80302670:80302725,	80302086	80302159	80302150	80302150	Frame_Shift_Del	A	-	p.E397fs
LIHC	TCGA-G3-A3CJ-01	CACNA2D1	ENST00000356253.5,ENST00000443883.1	chr7	81611882:81611943:81613950:81614027:81620500:81620562,	81613951	81614027	81613996	81613996	Frame_Shift_Del	A	-	p.Y611fs
LIHC	TCGA-G3-A3CJ-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82476462:82476563:82508652:82508778:82523712:82523770,82476462:82476563:82508652:82508778:82531966:82532057,	82508653	82508778	82508685	82508685	Frame_Shift_Del	C	-	p.G4541fs
LIHC	TCGA-G3-A3CJ-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82579216	82579216	Frame_Shift_Del	C	-	p.G3563fs
LIHC	TCGA-G3-A3CJ-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82580405	82580405	Frame_Shift_Del	T	-	p.T3167fs
LIHC	TCGA-G3-A3CJ-01	SEMA3A	ENST00000436949.1,ENST00000265362.4	chr7	83640498:83640613:83643524:83643667:83675639:83675759,	83643525	83643667	83643586	83643586	Frame_Shift_Del	T	-	p.N250fs
LIHC	TCGA-G3-A3CJ-01	SEMA3D	ENST00000444867.1	chr7	84710832:84710895:84727120:84727281:84751056:84751107,	84727121	84727281	84727131	84727131	Frame_Shift_Del	T	-	p.N101fs
LIHC	TCGA-G3-A3CJ-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415682	86415682	Frame_Shift_Del	C	-	p.P193fs
LIHC	TCGA-G3-A3CJ-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817444	86817444	Frame_Shift_Del	A	-	p.Q147fs
LIHC	TCGA-G3-A3CJ-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817444	86817444	Frame_Shift_Del	A	-	p.Q147fs
LIHC	TCGA-G3-A3CJ-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87031449:87031618:87032450:87032597:87035603:87035810,	87032451	87032597	87032568	87032568	Frame_Shift_Del	C	-	p.G1179fs
LIHC	TCGA-G3-A3CJ-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87049313:87049391:87051436:87051541:87053221:87053368,	87051437	87051541	87051452	87051452	Frame_Shift_Del	A	-	p.F767fs
LIHC	TCGA-G3-A3CJ-01	STEAP4	ENST00000380079.4	chr7	87910229:87910394:87911955:87912483:87913128:87913205,	87911956	87912483	87912331	87912331	Frame_Shift_Del	G	-	p.P203fs
LIHC	TCGA-G3-A3CJ-01	CDK14	ENST00000380050.3,ENST00000449528.1	chr7	90233531:90233563:90355880:90356126:90376995:90377040,	90355881	90356126	90355962	90355962	Frame_Shift_Del	A	-	p.K24fs
LIHC	TCGA-G3-A3CJ-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91641814:91641956:91643562:91643642:91645442:91645581,	91643563	91643642	91643597	91643597	Frame_Shift_Del	A	-	p.G1201fs
LIHC	TCGA-G3-A3CJ-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91691587:91691800:91694544:91694777:91695740:91695860,	91694545	91694777	91694755	91694755	Frame_Shift_Del	A	-	p.E2075fs
LIHC	TCGA-G3-A3CJ-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708684	91708684	Frame_Shift_Del	A	-	p.K2425fs
LIHC	TCGA-G3-A3CJ-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91709282	91709282	Frame_Shift_Del	A	-	p.E2624fs
LIHC	TCGA-G3-A3CJ-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91731983	91731983	Frame_Shift_Del	T	-	p.L3730fs
LIHC	TCGA-G3-A3CJ-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000463118.1,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91732000:91732140:91734991:91735077:91736606:91736736,	91734992	91735077	91734999	91734999	Frame_Shift_Del	T	-	p.F3784fs
LIHC	TCGA-G3-A3CJ-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000463118.1,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91732000:91732140:91734991:91735077:91736606:91736736,	91734992	91735077	91735036	91735036	Frame_Shift_Del	T	-	p.V3796fs
LIHC	TCGA-G3-A3CJ-01	ANKIB1	ENST00000265742.3	chr7	91974291:91974380:91980263:91980408:91981789:91981956,	91980264	91980408	91980305	91980305	Frame_Shift_Del	T	-	p.I376fs
LIHC	TCGA-G3-A3CJ-01	ANKIB1	ENST00000422095.1,ENST00000265742.3	chr7	92000885:92000921:92015822:92015957:92017111:92017198,	92015823	92015957	92015930	92015930	Frame_Shift_Del	G	-	p.E576fs
LIHC	TCGA-G3-A3CJ-01	ANKIB1	ENST00000422095.1,ENST00000265742.3	chr7	92015822:92015957:92017111:92017198:92017288:92017355,	92017112	92017198	92017118	92017118	Frame_Shift_Del	A	-	p.K588fs
LIHC	TCGA-G3-A3CJ-01	PEX1	ENST00000438045.1,ENST00000248633.4,ENST00000484913.1,ENST00000428214.1	chr7	92138642:92138725:92140257:92140361:92140893:92141017,	92140258	92140361	92140297	92140297	Frame_Shift_Del	A	-	p.F516fs
LIHC	TCGA-G3-A3CJ-01	FAM133B	ENST00000438306.1,ENST00000427372.1,ENST00000445716.1	chr7	92191595:92191682:92195327:92195375:92199136:92199229,	92195328	92195375	92195362	92195362	Frame_Shift_Del	T	-	p.K200fs
LIHC	TCGA-G3-A3CJ-01	FAM133B	ENST00000415397.2	chr7	92191595:92191682:92195323:92195375:92199136:92199229,	92195324	92195375	92195362	92195362	Frame_Shift_Del	T	-	p.K200fs
LIHC	TCGA-G3-A3CJ-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000341723.4	chr7	92826797:92826923:92837892:92838189:92844713:92844998,	92837893	92838189	92838139	92838139	Frame_Shift_Del	C	-	p.E256fs
LIHC	TCGA-G3-A3CJ-01	COL1A2	ENST00000297268.6	chr7	94029507:94029600:94030878:94030932:94033867:94033912,	94030879	94030932	94030918	94030918	Frame_Shift_Del	G	-	p.G89fs
LIHC	TCGA-G3-A3CJ-01	COL1A2	ENST00000297268.6	chr7	94039553:94039607:94039731:94039839:94040200:94040254,	94039732	94039839	94039772	94039772	Frame_Shift_Del	A	-	p.E378fs
LIHC	TCGA-G3-A3CJ-01	COL1A2	ENST00000481570.1	chr7	94055309:94055363:94055734:94056373:94056499:94056571,	94055735	94056373	94055779	94055779	Frame_Shift_Del	G	-	p.K1014fs
LIHC	TCGA-G3-A3CJ-01	CASD1	ENST00000297273.4	chr7	94164620:94164835:94166783:94167206:94168278:94168368,	94166784	94167206	94167000	94167000	Frame_Shift_Del	A	-	p.K354fs
LIHC	TCGA-G3-A3CJ-01	CASD1	ENST00000297273.4	chr7	94174856:94175013:94176407:94176487:94178844:94178946,	94176408	94176487	94176449	94176449	Frame_Shift_Del	T	-	p.F559fs
LIHC	TCGA-G3-A3CJ-01	PPP1R9A	ENST00000340694.4,ENST00000433881.1,ENST00000433360.1,ENST00000456331.2,ENST00000289495.5,ENST00000424654.1	chr7	94750023:94750144:94791178:94791283:94827660:94827796,	94791179	94791283	94791242	94791242	Frame_Shift_Del	T	-	p.N571fs
LIHC	TCGA-G3-A3CJ-01	PPP1R9A	ENST00000433360.1,ENST00000289495.5	chr7	94915517:94915637:94917847:94918030:94919402:94919667,	94917848	94918030	94918003	94918003	Frame_Shift_Del	C	-	p.L1218fs
LIHC	TCGA-G3-A3CJ-01	PON2	ENST00000491069.1	chr7	95041635:95041789:95045483:95045609:95053826:95053897,	95045484	95045609	95045560	95045560	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-G3-A3CJ-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000493290.1	chr7	95041635:95041789:95045553:95045609:95053826:95053897,	95045554	95045609	95045560	95045560	Frame_Shift_Del	A	-	p.F86fs
LIHC	TCGA-G3-A3CJ-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442521	95442521	Frame_Shift_Del	T	-	p.H79fs
LIHC	TCGA-G3-A3CJ-01	DYNC1I1	ENST00000359388.4,ENST00000537881.1	chr7	95439703:95439818:95442558:95442649:95499194:95499310,	95442559	95442649	95442635	95442635	Frame_Shift_Del	G	-	p.L117fs
LIHC	TCGA-G3-A3CJ-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442635	95442635	Frame_Shift_Del	G	-	p.L117fs
LIHC	TCGA-G3-A3CJ-01	TAC1	ENST00000319273.5,ENST00000350485.4	chr7	97363034:97363131:97363559:97363604:97364137:97364161,	97363560	97363604	97363572	97363572	Frame_Shift_Del	A	-	p.E78fs
LIHC	TCGA-G3-A3CJ-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821168	97821168	Frame_Shift_Del	C	-	p.T464fs
LIHC	TCGA-G3-A3CJ-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821329	97821329	Frame_Shift_Del	G	-	p.G518fs
LIHC	TCGA-G3-A3CJ-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821447	97821447	Frame_Shift_Del	A	-	p.E557fs
LIHC	TCGA-G3-A3CJ-01	LMTK2	ENST00000297293.5	chr7	97820925:97823884:97832885:97833018:97833255:97833498,	97832886	97833018	97832890	97832890	Frame_Shift_Del	C	-	p.T1371fs
LIHC	TCGA-G3-A3CJ-01	TECPR1	ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000483740.1,ENST00000490842.1	chr7	97858355:97858478:97860272:97860430:97860535:97860685,	97860273	97860430	97860372	97860372	Frame_Shift_Del	G	-	p.P728fs
LIHC	TCGA-G3-A3CJ-01	TECPR1	ENST00000542604.1	chr7	97870162:97870263:97870381:97870583:97872778:97872904,	97870382	97870583	97870484	97870484	Frame_Shift_Del	C	-	p.E244fs
LIHC	TCGA-G3-A3CJ-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000463648.1	chr7	97870162:97870263:97870381:97870556:97872778:97872886,	97870382	97870556	97870484	97870484	Frame_Shift_Del	C	-	p.E244fs
LIHC	TCGA-G3-A3CJ-01	TECPR1	ENST00000379795.3,ENST00000447648.2	chr7	97873882:97874005:97874196:97874379:97875233:97875435,	97874197	97874379	97874209	97874209	Frame_Shift_Del	G	-	p.P132fs
LIHC	TCGA-G3-A3CJ-01	TECPR1	ENST00000379795.3,ENST00000447648.2	chr7	97873882:97874005:97874196:97874379:97875233:97875435,	97874197	97874379	97874323	97874323	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-G3-A3CJ-01	BAIAP2L1	ENST00000005260.8,ENST00000462558.1	chr7	97939756:97939904:97941408:97941576:97944771:97944924,	97941409	97941576	97941457	97941457	Frame_Shift_Del	G	-	p.P253fs
LIHC	TCGA-G3-A3CJ-01	BAIAP2L1	ENST00000005260.8,ENST00000473569.1,ENST00000462558.1	chr7	97946548:97946668:97949369:97949441:97949548:97949610,	97949370	97949441	97949433	97949433	Frame_Shift_Del	T	-	p.K95fs
LIHC	TCGA-G3-A3CJ-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98602753:98602971:98605999:98606184:98608674:98608878,	98606000	98606184	98606021	98606021	Frame_Shift_Del	C	-	p.S3578fs
LIHC	TCGA-G3-A3CJ-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98636010:98636148:98638000:98638179:98639740:98639855,	98638001	98638179	98638090	98638090	Frame_Shift_Del	G	-	p.P513fs
LIHC	TCGA-G3-A3CJ-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98639740:98639855:98643320:98643424:98645306:98645505,	98643321	98643424	98643377	98643377	Frame_Shift_Del	T	-	p.K426fs
LIHC	TCGA-G3-A3CJ-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98643320:98643424:98645306:98645505:98647185:98647332,	98645307	98645505	98645354	98645354	Frame_Shift_Del	G	-	p.Q395fs
LIHC	TCGA-G3-A3CJ-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98648979:98649064:98649827:98650069:98652412:98652488,	98649828	98650069	98650007	98650007	Frame_Shift_Del	G	-	p.P181fs
LIHC	TCGA-G3-A3CJ-01	CYP3A5	ENST00000343703.5,ENST00000339843.2,ENST00000461920.1,ENST00000469887.1,ENST00000222982.4	chr7	99250175:99250402:99258121:99258282:99260438:99260505,	99258122	99258282	99258150	99258150	Frame_Shift_Del	T	-	p.K323fs
LIHC	TCGA-G3-A3CJ-01	CYP3A5	ENST00000343703.5,ENST00000339843.2,ENST00000461920.1,ENST00000469887.1,ENST00000222982.4	chr7	99250175:99250402:99258121:99258282:99260438:99260505,	99258122	99258282	99258236	99258236	Frame_Shift_Del	A	-	p.F294fs
LIHC	TCGA-G3-A3CJ-01	CYP3A4	ENST00000480043.1,ENST00000336411.2,ENST00000415003.1	chr7	99370212:99370312:99375650:99375703:99377614:99377676,	99375651	99375703	99375659	99375659	Frame_Shift_Del	T	-	p.K70fs
LIHC	TCGA-G3-A3CJ-01	CYP3A43	ENST00000481362.1,ENST00000312017.5,ENST00000222382.5,ENST00000434806.1,ENST00000421837.2	chr7	99425665:99425809:99434075:99434169:99436742:99436795,	99434076	99434169	99434095	99434095	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-G3-A3CJ-01	TRIM4	ENST00000355947.2	chr7	99507187:99507283:99514324:99514402:99516631:99516728,	99514325	99514402	99514357	99514357	Frame_Shift_Del	T	-	p.I147fs
LIHC	TCGA-G3-A3CJ-01	ZSCAN21	ENST00000543588.1,ENST00000456748.2	chr7	99655320:99655513:99661410:99661602:99661705:99661878,	99661411	99661602	99661482	99661482	Frame_Shift_Del	G	-	p.G222fs
LIHC	TCGA-G3-A3CJ-01	AP4M1	ENST00000359593.4,ENST00000438383.1,ENST00000429084.1,ENST00000422582.1,ENST00000421755.1,ENST00000479916.1,ENST00000439416.1,ENST00000445208.1	chr7	99701714:99701777:99702496:99702563:99702667:99702721,	99702497	99702563	99702523	99702523	Frame_Shift_Del	G	-	p.Q218fs
LIHC	TCGA-G3-A3CJ-01	TAF6	ENST00000453269.2,ENST00000421980.1,ENST00000418432.2,ENST00000472509.1,ENST00000487288.1,ENST00000344095.4,ENST00000452041.1,ENST00000437822.2	chr7	99709421:99709452:99709544:99709622:99709730:99709876,	99709545	99709622	99709557	99709557	Frame_Shift_Del	A	-	p.F262fs
LIHC	TCGA-G3-A3CJ-01	PILRA	ENST00000198536.2	chr7	99971909:99972056:99987510:99987729:99995501:99995535,	99987511	99987729	99987534	99987534	Frame_Shift_Del	C	-	p.P160fs
LIHC	TCGA-G3-A3CJ-01	ZCWPW1	ENST00000398027.2	chr7	99998716:99998959:100000138:100000199:100001316:100001408,99999511:99999664:100000138:100000199:100001316:100001408,	100000139	100000199	100000151	100000151	Frame_Shift_Del	T	-	p.T487fs
LIHC	TCGA-G3-A3CJ-01	ZCWPW1	ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100014688:100014806:100016733:100016812:100017252:100017436,	100016734	100016812	100016807	100016807	Frame_Shift_Del	T	-	p.K96fs
LIHC	TCGA-G3-A3CJ-01	ZCWPW1	ENST00000472716.1	chr7	100016768:100016812:100017252:100017436:100018244:100018301,	100017253	100017436	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
LIHC	TCGA-G3-A3CJ-01	ZCWPW1	ENST00000464510.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100016768:100016812:100017252:100017506:100018244:100018301,	100017253	100017506	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
LIHC	TCGA-G3-A3CJ-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028438	100028438	Frame_Shift_Del	G	-	p.R266fs
LIHC	TCGA-G3-A3CJ-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075651	100075651	Frame_Shift_Del	C	-	p.G4fs
LIHC	TCGA-G3-A3CJ-01	AGFG2	ENST00000300176.4,ENST00000262935.4,ENST00000429987.1	chr7	100160216:100160305:100160485:100160569:100161456:100161585,	100160486	100160569	100160522	100160522	Frame_Shift_Del	C	-	p.S375fs
LIHC	TCGA-G3-A3CJ-01	LRCH4	ENST00000476881.1,ENST00000497245.1,ENST00000467201.1,ENST00000310300.6	chr7	100172685:100172927:100173327:100173405:100173493:100173631,	100173328	100173405	100173400	100173400	Frame_Shift_Del	T	-	p.K594fs
LIHC	TCGA-G3-A3CJ-01	FBXO24	ENST00000241071.6,ENST00000468962.1,ENST00000488079.1,ENST00000427939.2	chr7	100192005:100192164:100192724:100192846:100193197:100193244,	100192725	100192846	100192755	100192755	Frame_Shift_Del	C	-	p.T328fs
LIHC	TCGA-G3-A3CJ-01	TFR2	ENST00000544242.1,ENST00000490084.1,ENST00000462107.1,ENST00000473571.1,ENST00000476304.1,ENST00000223051.3	chr7	100229428:100229568:100229704:100229821:100230623:100230713,	100229705	100229821	100229775	100229775	Frame_Shift_Del	G	-	p.P299fs
LIHC	TCGA-G3-A3CJ-01	ACTL6B	ENST00000487125.1,ENST00000160382.5	chr7	100240764:100240949:100243871:100243958:100244173:100244269,	100243872	100243958	100243891	100243891	Frame_Shift_Del	C	-	p.G394fs
LIHC	TCGA-G3-A3CJ-01	ACTL6B	ENST00000485601.1,ENST00000160382.5	chr7	100252641:100252742:100253043:100253209:100253425:100253502,	100253044	100253209	100253198	100253198	Frame_Shift_Del	G	-	p.P38fs
LIHC	TCGA-G3-A3CJ-01	GIGYF1	ENST00000275732.5	chr7	100282460:100282517:100282671:100282769:100282966:100283104,	100282672	100282769	100282756	100282756	Frame_Shift_Del	C	-	p.G402fs
LIHC	TCGA-G3-A3CJ-01	SLC12A9	ENST00000462106.1,ENST00000540482.1,ENST00000354161.3,ENST00000428758.1	chr7	100450398:100450461:100451777:100452000:100454489:100454798,100450398:100450461:100451777:100452000:100456456:100456564,100450374:100450457:100451777:100452000:100454489:100454798,100450374:100450457:100451777:100452000:100452241:100452376,	100451778	100452000	100451898	100451898	Frame_Shift_Del	G	-	p.G28fs
LIHC	TCGA-G3-A3CJ-01	SLC12A9	ENST00000418037.1,ENST00000467972.1,ENST00000416675.1,ENST00000275729.3,ENST00000497958.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1	chr7	100456537:100456564:100456671:100456783:100457506:100457540,	100456672	100456783	100456685	100456685	Frame_Shift_Del	C	-	p.D293fs
LIHC	TCGA-G3-A3CJ-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459442	100459442	Frame_Shift_Del	C	-	p.N540fs
LIHC	TCGA-G3-A3CJ-01	SRRT	ENST00000445337.1	chr7	100485323:100485480:100485662:100485764:100486094:100486277,	100485663	100485764	100485667	100485667	Frame_Shift_Del	C	-	p.L776fs
LIHC	TCGA-G3-A3CJ-01	MOGAT3	ENST00000440203.2,ENST00000379423.3	chr7	100843514:100843585:100843688:100843796:100844026:100844084,	100843689	100843796	100843731	100843731	Frame_Shift_Del	A	-	p.Y59fs
LIHC	TCGA-G3-A3CJ-01	PLOD3	ENST00000223127.3	chr7	100849257:100849717:100850059:100850185:100850858:100850948,	100850060	100850185	100850179	100850179	Frame_Shift_Del	C	-	p.A648fs
LIHC	TCGA-G3-A3CJ-01	PLOD3	ENST00000223127.3	chr7	100853636:100853725:100853812:100853954:100854871:100854953,	100853813	100853954	100853921	100853921	Frame_Shift_Del	G	-	p.A464fs
LIHC	TCGA-G3-A3CJ-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855824	100855824	Frame_Shift_Del	A	-	p.F331fs
LIHC	TCGA-G3-A3CJ-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855879	100855879	Frame_Shift_Del	G	-	p.R313fs
LIHC	TCGA-G3-A3CJ-01	ZNHIT1	ENST00000461205.1	chr7	100861599:100861766:100865884:100866055:100866757:100866837,	100865885	100866055	100865991	100865991	Frame_Shift_Del	C	-	p.D43fs
LIHC	TCGA-G3-A3CJ-01	ZNHIT1	ENST00000492315.1,ENST00000305105.2,ENST00000485387.1	chr7	100866757:100866837:100866953:100867123:100867217:100867239,	100866954	100867123	100867051	100867051	Frame_Shift_Del	C	-	p.S124fs
LIHC	TCGA-G3-A3CJ-01	CLDN15	ENST00000308344.5,ENST00000401528.1,ENST00000414035.1,ENST00000433833.1	chr7	100875768:100875796:100875884:100876001:100876113:100876195,	100875885	100876001	100875968	100875968	Frame_Shift_Del	C	-	p.W166fs
LIHC	TCGA-G3-A3CJ-01	CUX1	ENST00000292538.4,ENST00000497815.1,ENST00000360264.3,ENST00000425244.2	chr7	101460919:101460949:101559394:101559505:101671377:101671425,101459300:101459373:101559394:101559505:101671377:101671425,	101559395	101559505	101559430	101559430	Frame_Shift_Del	C	-	p.N33fs
LIHC	TCGA-G3-A3CJ-01	CUX1	ENST00000549414.2	chr7	101840219:101840585:101843350:101843452:101844639:101845484,	101843351	101843452	101843412	101843412	Frame_Shift_Del	C	-	p.I685fs
LIHC	TCGA-G3-A3CJ-01	LRWD1	ENST00000463739.1,ENST00000485808.1,ENST00000485417.1,ENST00000292616.5	chr7	102108165:102108270:102108508:102108634:102108709:102108824,	102108509	102108634	102108570	102108570	Frame_Shift_Del	G	-	p.R247fs
LIHC	TCGA-G3-A3CJ-01	FBXL13	ENST00000379308.3,ENST00000455112.2	chr7	102453721:102453978:102462486:102462650:102495223:102495307,	102462487	102462650	102462491	102462491	Frame_Shift_Del	A	-	p.S644fs
LIHC	TCGA-G3-A3CJ-01	FBXL13	ENST00000379308.3,ENST00000455112.2	chr7	102453721:102453978:102462486:102462650:102495223:102495307,	102462487	102462650	102462531	102462531	Frame_Shift_Del	T	-	p.K630fs
LIHC	TCGA-G3-A3CJ-01	FBXL13	ENST00000313221.4,ENST00000379308.3,ENST00000456695.1,ENST00000436908.1,ENST00000379306.3,ENST00000393772.2,ENST00000440067.1,ENST00000455112.2,ENST00000379305.3,ENST00000448002.2	chr7	102667895:102668005:102669046:102669195:102669797:102669865,	102669047	102669195	102669163	102669163	Frame_Shift_Del	T	-	p.N34fs
LIHC	TCGA-G3-A3CJ-01	ARMC10	ENST00000323735.6,ENST00000434153.1,ENST00000323716.3	chr7	102715614:102715858:102716223:102716328:102724128:102724277,	102716224	102716328	102716233	102716233	Frame_Shift_Del	A	-	p.E51fs
LIHC	TCGA-G3-A3CJ-01	ARMC10	ENST00000428183.2,ENST00000454559.1	chr7	102724128:102724277:102727076:102727211:102732923:102733100,102724128:102724277:102727076:102727211:102737723:102737795,	102727077	102727211	102727119	102727119	Frame_Shift_Del	A	-	p.K146fs
LIHC	TCGA-G3-A3CJ-01	DNAJC2	ENST00000249270.7,ENST00000379263.3	chr7	102962378:102962528:102962957:102963079:102963149:102963241,	102962958	102963079	102963046	102963046	Frame_Shift_Del	T	-	p.K282fs
LIHC	TCGA-G3-A3CJ-01	PSMC2	ENST00000544811.1,ENST00000435765.1,ENST00000292644.3	chr7	103004589:103004754:103006522:103006610:103007859:103008062,	103006523	103006610	103006564	103006564	Frame_Shift_Del	A	-	p.T266fs
LIHC	TCGA-G3-A3CJ-01	ORC5	ENST00000422497.1,ENST00000297431.4,ENST00000545943.1,ENST00000477223.1	chr7	103777227:103777340:103801519:103801630:103805682:103805730,	103801520	103801630	103801533	103801533	Frame_Shift_Del	T	-	p.N247fs
LIHC	TCGA-G3-A3CJ-01	ORC5	ENST00000422497.1,ENST00000297431.4,ENST00000545943.1,ENST00000447452.2	chr7	103808920:103808973:103824390:103824481:103824570:103824619,	103824391	103824481	103824426	103824426	Frame_Shift_Del	T	-	p.K131fs
LIHC	TCGA-G3-A3CJ-01	KMT2E	ENST00000334914.7,ENST00000257745.4,ENST00000334884.5,ENST00000334877.4,ENST00000311117.3	chr7	104742332:104742641:104745885:104746140:104746305:104746402,	104745886	104746140	104745930	104745930	Frame_Shift_Del	A	-	p.G747fs
LIHC	TCGA-G3-A3CJ-01	SRPK2	ENST00000393651.3,ENST00000482897.1	chr7	104809603:104809712:104844074:104844232:104909252:104909316,104809603:104809712:104844074:104844232:105029094:105029149,	104844075	104844232	104844151	104844151	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-G3-A3CJ-01	ATXN7L1	ENST00000485652.1	chr7	105278815:105279056:105283284:105283568:105305512:105305735,	105283285	105283568	105283314	105283314	Frame_Shift_Del	T	-	p.N278fs
LIHC	TCGA-G3-A3CJ-01	CDHR3	ENST00000470188.1	chr7	105603741:105603810:105615289:105615492:105621413:105621530,105552928:105553084:105615289:105615492:105621413:105621579,	105615290	105615492	105615373	105615373	Frame_Shift_Del	T	-	p.F44fs
LIHC	TCGA-G3-A3CJ-01	CDHR3	ENST00000470188.1,ENST00000461766.1	chr7	105621476:105621579:105624637:105624735:105635196:105635291,105621476:105621579:105624637:105624735:105644943:105645042,	105624638	105624735	105624714	105624714	Frame_Shift_Del	A	-	p.T164fs
LIHC	TCGA-G3-A3CJ-01	CDHR3	ENST00000470188.1,ENST00000461766.1	chr7	105621476:105621579:105624637:105624735:105635196:105635291,105621476:105621579:105624637:105624735:105644943:105645042,	105624638	105624735	105624717	105624717	Frame_Shift_Del	C	-	p.S165fs
LIHC	TCGA-G3-A3CJ-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106508154	106508154	Frame_Shift_Del	A	-	p.K50fs
LIHC	TCGA-G3-A3CJ-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509148	106509148	Frame_Shift_Del	T	-	p.V381fs
LIHC	TCGA-G3-A3CJ-01	PIK3CG	ENST00000496166.1,ENST00000473541.1,ENST00000440650.2,ENST00000359195.3	chr7	106512981:106513047:106513157:106513383:106515144:106515248,	106513158	106513383	106513161	106513161	Frame_Shift_Del	A	-	p.K689fs
LIHC	TCGA-G3-A3CJ-01	PRKAR2B	ENST00000488792.1,ENST00000393613.2,ENST00000265717.4	chr7	106762396:106762449:106768656:106768740:106781291:106781398,	106768657	106768740	106768668	106768668	Frame_Shift_Del	A	-	p.P136fs
LIHC	TCGA-G3-A3CJ-01	COG5	ENST00000393603.2,ENST00000347053.3,ENST00000297135.3	chr7	106924015:106924177:106938586:106938791:106964884:106964966,	106938587	106938791	106938599	106938599	Frame_Shift_Del	T	-	p.K465fs
LIHC	TCGA-G3-A3CJ-01	BCAP29	ENST00000379119.2,ENST00000445771.2	chr7	107253777:107253877:107254098:107254177:107258772:107259060,	107254099	107254177	107254173	107254173	Frame_Shift_Del	A	-	p.R255fs
LIHC	TCGA-G3-A3CJ-01	SLC26A4	ENST00000265715.3	chr7	107323899:107323982:107329497:107329645:107330568:107330682,	107329498	107329645	107329642	107329642	Frame_Shift_Del	C	-	p.N382fs
LIHC	TCGA-G3-A3CJ-01	SLC26A4	ENST00000265715.3,ENST00000480841.1,ENST00000543100.1,ENST00000541474.1,ENST00000544569.1	chr7	107340530:107340620:107341545:107341641:107342271:107342502,	107341546	107341641	107341597	107341597	Frame_Shift_Del	A	-	p.K587fs
LIHC	TCGA-G3-A3CJ-01	SLC26A3	ENST00000340010.5,ENST00000379083.3,ENST00000422236.2	chr7	107431543:107431680:107432274:107432385:107434186:107434276,	107432275	107432385	107432352	107432352	Frame_Shift_Del	G	-	p.P102fs
LIHC	TCGA-G3-A3CJ-01	DLD	ENST00000440410.1,ENST00000489184.1,ENST00000417551.1,ENST00000415325.1,ENST00000537148.1,ENST00000205402.5	chr7	107545402:107545503:107545805:107545949:107546711:107546813,	107545806	107545949	107545934	107545934	Frame_Shift_Del	T	-	p.P189fs
LIHC	TCGA-G3-A3CJ-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564717	107564717	Frame_Shift_Del	T	-	p.T1752fs
LIHC	TCGA-G3-A3CJ-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107577537:107577722:107580433:107580803:107591670:107591767,	107580434	107580803	107580681	107580681	Frame_Shift_Del	C	-	p.V1196fs
LIHC	TCGA-G3-A3CJ-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107577537:107577722:107580433:107580803:107591670:107591767,	107580434	107580803	107580749	107580749	Frame_Shift_Del	C	-	p.G1173fs
LIHC	TCGA-G3-A3CJ-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107577537:107577722:107580433:107580803:107591670:107591767,	107580434	107580803	107580787	107580787	Frame_Shift_Del	G	-	p.P1160fs
LIHC	TCGA-G3-A3CJ-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107592453:107592668:107593974:107594199:107595911:107596075,	107593975	107594199	107594141	107594141	Frame_Shift_Del	C	-	p.G995fs
LIHC	TCGA-G3-A3CJ-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107601993:107602121:107603349:107603508:107604996:107605132,	107603350	107603508	107603470	107603470	Frame_Shift_Del	C	-	p.R603fs
LIHC	TCGA-G3-A3CJ-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107635331:107635405:107638801:107638937:107642002:107642178,	107638802	107638937	107638926	107638926	Frame_Shift_Del	T	-	p.K99fs
LIHC	TCGA-G3-A3CJ-01	NRCAM	ENST00000418239.1,ENST00000379024.4,ENST00000379028.3,ENST00000442580.1	chr7	107875073:107875132:107880402:107880614:107953108:107953175,107878195:107878213:107880402:107880614:107953108:107953175,	107880403	107880614	107880483	107880483	Frame_Shift_Del	T	-	p.K10fs
LIHC	TCGA-G3-A3CJ-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155870	108155870	Frame_Shift_Del	C	-	p.G22fs
LIHC	TCGA-G3-A3CJ-01	PNPLA8	ENST00000453144.1	chr7	108154587:108154737:108154879:108155891:108161919:108161965,108154725:108154737:108154879:108155891:108166472:108166564,	108154880	108155891	108155870	108155870	Frame_Shift_Del	C	-	p.G22fs
LIHC	TCGA-G3-A3CJ-01	IMMP2L	ENST00000415362.1,ENST00000331762.3,ENST00000450877.1,ENST00000452895.1,ENST00000405709.2	chr7	110303657:110303777:110526648:110526751:110603555:110603621,	110526649	110526751	110526734	110526734	Frame_Shift_Del	T	-	p.N108fs
LIHC	TCGA-G3-A3CJ-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000423057.2,ENST00000437633.1,ENST00000494651.2	chr7	111387322:111387499:111395570:111395657:111398679:111398846,	111395571	111395657	111395626	111395626	Frame_Shift_Del	A	-	p.L1454fs
LIHC	TCGA-G3-A3CJ-01	DOCK4	ENST00000445943.1,ENST00000428084.1,ENST00000476846.1,ENST00000437633.1,ENST00000468571.1	chr7	111638502:111638558:111640548:111640589:111644102:111644186,	111640549	111640589	111640562	111640562	Frame_Shift_Del	T	-	p.N50fs
LIHC	TCGA-G3-A3CJ-01	ZNF277	ENST00000457808.1	chr7	111926931:111927129:111936283:111936366:111958236:111958328,	111936284	111936366	111936300	111936300	Frame_Shift_Del	T	-	p.Y133fs
LIHC	TCGA-G3-A3CJ-01	TMEM168	ENST00000447395.1,ENST00000312814.6,ENST00000454074.1	chr7	112407229:112407799:112412835:112413110:112415230:112415373,	112412836	112413110	112412883	112412883	Frame_Shift_Del	A	-	p.L500fs
LIHC	TCGA-G3-A3CJ-01	TMEM168	ENST00000441474.1	chr7	112415230:112415373:112423752:112423838:112430214:112430445,	112423753	112423838	112423824	112423824	Frame_Shift_Del	A	-	p.C353fs
LIHC	TCGA-G3-A3CJ-01	FOXP2	ENST00000412402.1	chr7	114293980:114294064:114299410:114299487:114299626:114299728,	114299411	114299487	114299417	114299417	Frame_Shift_Del	C	-	p.A517fs
LIHC	TCGA-G3-A3CJ-01	MET	ENST00000397752.3,ENST00000436117.2,ENST00000318493.6	chr7	116380905:116381079:116395408:116395569:116397490:116397593,	116395409	116395569	116395427	116395427	Frame_Shift_Del	C	-	p.P574fs
LIHC	TCGA-G3-A3CJ-01	MET	ENST00000397752.3,ENST00000436117.2,ENST00000318493.6	chr7	116380905:116381079:116395408:116395569:116397490:116397593,	116395409	116395569	116395444	116395444	Frame_Shift_Del	A	-	p.T579fs
LIHC	TCGA-G3-A3CJ-01	MET	ENST00000539704.1,ENST00000397752.3,ENST00000318493.6	chr7	116422041:116422151:116423357:116423523:116435708:116435845,	116423358	116423523	116423366	116423366	Frame_Shift_Del	A	-	p.E1214fs
LIHC	TCGA-G3-A3CJ-01	ST7	ENST00000487459.1,ENST00000393446.2,ENST00000393447.4,ENST00000490039.1,ENST00000446490.1,ENST00000432298.1,ENST00000393443.1,ENST00000393451.3,ENST00000323984.3,ENST00000393444.3,ENST00000489293.1,ENST00000265437.5,ENST00000422922.1,ENST00000393449.1	chr7	116776134:116776289:116778488:116778586:116810915:116811030,	116778489	116778586	116778508	116778508	Frame_Shift_Del	G	-	p.L295fs
LIHC	TCGA-G3-A3CJ-01	ST7	ENST00000487459.1,ENST00000393446.2,ENST00000393447.4,ENST00000490039.1,ENST00000446490.1,ENST00000432298.1,ENST00000393443.1,ENST00000393451.3,ENST00000323984.3,ENST00000393444.3,ENST00000489293.1,ENST00000265437.5,ENST00000422922.1,ENST00000393449.1	chr7	116778488:116778586:116810915:116811030:116829374:116829447,	116810916	116811030	116810930	116810930	Frame_Shift_Del	C	-	p.F326fs
LIHC	TCGA-G3-A3CJ-01	ST7	ENST00000446490.1	chr7	116830887:116830990:116849840:116849991:116869815:116870150,	116849841	116849991	116849925	116849925	Frame_Shift_Del	T	-	p.F447fs
LIHC	TCGA-G3-A3CJ-01	ASZ1	ENST00000463182.1,ENST00000479454.1,ENST00000284629.2,ENST00000450714.2	chr7	117060216:117060328:117062290:117062413:117066889:117066989,	117062291	117062413	117062323	117062323	Frame_Shift_Del	A	-	p.L99fs
LIHC	TCGA-G3-A3CJ-01	ASZ1	ENST00000463182.1,ENST00000479454.1,ENST00000284629.2,ENST00000450714.2	chr7	117060216:117060328:117062290:117062413:117066889:117066989,	117062291	117062413	117062372	117062372	Frame_Shift_Del	G	-	p.L83fs
LIHC	TCGA-G3-A3CJ-01	CTTNBP2	ENST00000446636.1,ENST00000160373.3,ENST00000441556.1	chr7	117365105:117365311:117368142:117368321:117374966:117375154,	117368143	117368321	117368193	117368193	Frame_Shift_Del	T	-	p.K1335fs
LIHC	TCGA-G3-A3CJ-01	CTTNBP2	ENST00000446636.1,ENST00000160373.3,ENST00000441556.1	chr7	117420494:117420645:117422915:117423015:117424304:117424508,	117422916	117423015	117422955	117422955	Frame_Shift_Del	A	-	p.F778fs
LIHC	TCGA-G3-A3CJ-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121568209:121568275:121608004:121608184:121612594:121612746,	121608005	121608184	121608017	121608017	Frame_Shift_Del	A	-	p.Q46fs
LIHC	TCGA-G3-A3CJ-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121616838:121616905:121623718:121623876:121624020:121624171,	121623719	121623876	121623788	121623788	Frame_Shift_Del	T	-	p.I230fs
LIHC	TCGA-G3-A3CJ-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1,ENST00000470504.1	chr7	121676653:121676736:121678808:121678943:121679507:121679638,	121678809	121678943	121678935	121678935	Frame_Shift_Del	A	-	p.K1832fs
LIHC	TCGA-G3-A3CJ-01	PTPRZ1	ENST00000393386.2,ENST00000449182.1	chr7	121694994:121695141:121698853:121698996:121699806:121699942,	121698854	121698996	121698876	121698876	Frame_Shift_Del	G	-	p.R2184fs
LIHC	TCGA-G3-A3CJ-01	AASS	ENST00000358954.2	chr7	121721553:121721649:121726065:121726233:121731756:121731897,121722841:121722945:121726065:121726233:121731756:121731897,	121726066	121726233	121726174	121726174	Frame_Shift_Del	A	-	p.F692fs
LIHC	TCGA-G3-A3CJ-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000462699.1,ENST00000334010.7,ENST00000449022.2	chr7	121965530:121965635:121985627:121985735:122000841:122000874,	121985628	121985735	121985638	121985638	Frame_Shift_Del	T	-	p.K1199fs
LIHC	TCGA-G3-A3CJ-01	CADPS2	ENST00000412584.2	chr7	122019421:122019496:122026348:122026363:122027079:122027227,	122026349	122026363	122026361	122026361	Frame_Shift_Del	A	-	p.F1059fs
LIHC	TCGA-G3-A3CJ-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7	chr7	122028636:122028792:122033494:122033636:122047593:122047750,	122033495	122033636	122033608	122033608	Frame_Shift_Del	T	-	p.K923fs
LIHC	TCGA-G3-A3CJ-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7	chr7	122028636:122028792:122033494:122033636:122047593:122047750,	122033495	122033636	122033617	122033617	Frame_Shift_Del	T	-	p.K920fs
LIHC	TCGA-G3-A3CJ-01	CADPS2	ENST00000412584.2,ENST00000397721.4,ENST00000313070.7,ENST00000334010.7,ENST00000449022.2	chr7	122194603:122194743:122221232:122221344:122255234:122255353,	122221233	122221344	122221309	122221309	Frame_Shift_Del	G	-	p.P420fs
LIHC	TCGA-G3-A3CJ-01	NDUFA5	ENST00000471770.1,ENST00000378795.4,ENST00000355749.2,ENST00000467117.1	chr7	123182054:123182274:123185664:123185730:123190523:123190640,	123185665	123185730	123185713	123185713	Frame_Shift_Del	T	-	p.K67fs
LIHC	TCGA-G3-A3CJ-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173030	126173030	Frame_Shift_Del	A	-	p.F802fs
LIHC	TCGA-G3-A3CJ-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173278	126173278	Frame_Shift_Del	G	-	p.H720fs
LIHC	TCGA-G3-A3CJ-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173717	126173717	Frame_Shift_Del	G	-	p.P573fs
LIHC	TCGA-G3-A3CJ-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173733	126173733	Frame_Shift_Del	C	-	p.G568fs
LIHC	TCGA-G3-A3CJ-01	SND1	ENST00000461056.1,ENST00000468621.1,ENST00000354725.3	chr7	127326666:127326816:127334881:127335002:127338928:127338991,	127334882	127335002	127334968	127334968	Frame_Shift_Del	G	-	p.Q105fs
LIHC	TCGA-G3-A3CJ-01	SND1	ENST00000489417.1,ENST00000354725.3	chr7	127726989:127727103:127729540:127729744:127731888:127731933,	127729541	127729744	127729675	127729675	Frame_Shift_Del	G	-	p.V851fs
LIHC	TCGA-G3-A3CJ-01	RBM28	ENST00000223073.2	chr7	127977184:127977256:127978303:127978396:127978779:127978855,	127978304	127978396	127978371	127978371	Frame_Shift_Del	A	-	p.F158fs
LIHC	TCGA-G3-A3CJ-01	METTL2B	ENST00000497665.1,ENST00000262432.8,ENST00000482555.1,ENST00000480046.1	chr7	128120700:128120750:128128154:128128215:128133857:128133997,	128128155	128128215	128128185	128128185	Frame_Shift_Del	T	-	p.D148fs
LIHC	TCGA-G3-A3CJ-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138133	128138133	Frame_Shift_Del	G	-	p.G221fs
LIHC	TCGA-G3-A3CJ-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128133896:128133997:128138089:128138196:128140956:128141022,	128138090	128138196	128138190	128138190	Frame_Shift_Del	A	-	p.K240fs
LIHC	TCGA-G3-A3CJ-01	FAM71F2	ENST00000474069.1,ENST00000434001.2,ENST00000378704.3,ENST00000480462.1	chr7	128315701:128315913:128317617:128317867:128320084:128320203,	128317618	128317867	128317624	128317624	Frame_Shift_Del	C	-	p.L124fs
LIHC	TCGA-G3-A3CJ-01	FAM71F2	ENST00000474069.1,ENST00000434001.2,ENST00000378704.3,ENST00000480462.1	chr7	128315701:128315913:128317617:128317867:128320084:128320203,	128317618	128317867	128317722	128317722	Frame_Shift_Del	A	-	p.E157fs
LIHC	TCGA-G3-A3CJ-01	FAM71F1	ENST00000485070.1	chr7	128358981:128359137:128363250:128363372:128366887:128366922,	128363251	128363372	128363324	128363324	Frame_Shift_Del	A	-	p.E254fs
LIHC	TCGA-G3-A3CJ-01	CCDC136	ENST00000487361.1	chr7	128446800:128446912:128447413:128447599:128457811:128457918,	128447414	128447599	128447563	128447563	Frame_Shift_Del	C	-	p.H523fs
LIHC	TCGA-G3-A3CJ-01	CCDC136	ENST00000297788.4	chr7	128454702:128454973:128455667:128455985:128457811:128457918,	128455668	128455985	128455773	128455773	Frame_Shift_Del	A	-	p.K1051fs
LIHC	TCGA-G3-A3CJ-01	FLNC	ENST00000388853.3,ENST00000325888.8,ENST00000346177.6	chr7	128482284:128482428:128482628:128482752:128482847:128482912,	128482629	128482752	128482676	128482676	Frame_Shift_Del	C	-	p.G771fs
LIHC	TCGA-G3-A3CJ-01	IRF5	ENST00000357234.5	chr7	128587076:128587110:128587283:128587589:128587782:128587799,	128587284	128587589	128587321	128587321	Frame_Shift_Del	T	-	p.S173fs
LIHC	TCGA-G3-A3CJ-01	IRF5	ENST00000461416.1	chr7	128586554:128586616:128587076:128587589:128587782:128587799,	128587077	128587589	128587321	128587321	Frame_Shift_Del	T	-	p.S173fs
LIHC	TCGA-G3-A3CJ-01	TNPO3	ENST00000482320.1,ENST00000471166.1,ENST00000393245.1,ENST00000265388.5	chr7	128624221:128624313:128626782:128626974:128630014:128630154,	128626783	128626974	128626935	128626935	Frame_Shift_Del	T	-	p.K547fs
LIHC	TCGA-G3-A3CJ-01	TNPO3	ENST00000482320.1,ENST00000471166.1,ENST00000393245.1,ENST00000265388.5,ENST00000471234.1	chr7	128633860:128633968:128637442:128637589:128640482:128640621,	128637443	128637589	128637518	128637518	Frame_Shift_Del	A	-	p.I361fs
LIHC	TCGA-G3-A3CJ-01	SMO	ENST00000462420.1	chr7	128849129:128849238:128850203:128850389:128850805:128850954,128848599:128848692:128850203:128850389:128850805:128850954,	128850204	128850389	128850226	128850226	Frame_Shift_Del	G	-	p.G497fs
LIHC	TCGA-G3-A3CJ-01	CPA2	ENST00000222481.4	chr7	129917665:129917756:129919302:129919502:129921943:129922028,	129919303	129919502	129919457	129919457	Frame_Shift_Del	C	-	p.F314fs
LIHC	TCGA-G3-A3CJ-01	CPA2	ENST00000222481.4	chr7	129919302:129919502:129921943:129922028:129929399:129929638,	129921944	129922028	129921957	129921957	Frame_Shift_Del	A	-	p.Q334fs
LIHC	TCGA-G3-A3CJ-01	CPA4	ENST00000486598.1,ENST00000490117.1,ENST00000222482.4,ENST00000492072.1,ENST00000470542.1	chr7	129939109:129939244:129940655:129940754:129944317:129944332,	129940656	129940754	129940731	129940731	Frame_Shift_Del	G	-	p.G121fs
LIHC	TCGA-G3-A3CJ-01	PLXNA4	ENST00000359827.3,ENST00000321063.4	chr7	131888081:131888178:131895701:131895902:131908285:131908400,	131895702	131895902	131895809	131895809	Frame_Shift_Del	G	-	p.Q731fs
LIHC	TCGA-G3-A3CJ-01	PLXNA4	ENST00000359827.3,ENST00000321063.4	chr7	131888081:131888178:131895701:131895902:131908285:131908400,	131895702	131895902	131895893	131895893	Frame_Shift_Del	G	-	p.Q703fs
LIHC	TCGA-G3-A3CJ-01	EXOC4	ENST00000539845.1,ENST00000253861.4,ENST00000472020.1,ENST00000545148.1	chr7	133580351:133580488:133602335:133602491:133622643:133622709,	133602336	133602491	133602462	133602462	Frame_Shift_Del	A	-	p.P666fs
LIHC	TCGA-G3-A3CJ-01	LRGUK	ENST00000285928.2	chr7	133906530:133906670:133932307:133932396:133933702:133933828,	133932308	133932396	133932368	133932368	Frame_Shift_Del	C	-	p.R682fs
LIHC	TCGA-G3-A3CJ-01	CALD1	ENST00000436461.2,ENST00000443197.1,ENST00000543443.1,ENST00000424922.1,ENST00000417172.1,ENST00000482470.1,ENST00000361901.2	chr7	134613504:134613651:134617738:134618141:134625842:134625988,	134617739	134618141	134617859	134617859	Frame_Shift_Del	G	-	p.E113fs
LIHC	TCGA-G3-A3CJ-01	AGBL3	ENST00000436302.2	chr7	134766470:134766542:134800131:134800363:134819592:134820521,	134800132	134800363	134800175	134800175	Frame_Shift_Del	T	-	p.S773fs
LIHC	TCGA-G3-A3CJ-01	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135286117:135286255:135287552:135287742:135289087:135289208,	135287553	135287742	135287637	135287637	Frame_Shift_Del	T	-	p.L867fs
LIHC	TCGA-G3-A3CJ-01	NUP205	ENST00000477620.1	chr7	135315091:135315218:135320311:135320405:135322678:135322807,	135320312	135320405	135320357	135320357	Frame_Shift_Del	A	-	p.V1696fs
LIHC	TCGA-G3-A3CJ-01	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135315091:135315218:135320328:135320405:135322678:135322807,	135320329	135320405	135320357	135320357	Frame_Shift_Del	A	-	p.V1696fs
LIHC	TCGA-G3-A3CJ-01	NUP205	ENST00000477620.1	chr7	135315091:135315218:135320311:135320405:135322678:135322807,	135320312	135320405	135320384	135320384	Frame_Shift_Del	G	-	p.Q1705fs
LIHC	TCGA-G3-A3CJ-01	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135315091:135315218:135320328:135320405:135322678:135322807,	135320329	135320405	135320384	135320384	Frame_Shift_Del	G	-	p.Q1705fs
LIHC	TCGA-G3-A3CJ-01	FAM180A	ENST00000444083.1,ENST00000415751.1,ENST00000338588.3	chr7	135418424:135419067:135421846:135421947:135433252:135433367,	135421847	135421947	135421890	135421890	Frame_Shift_Del	G	-	p.P45fs
LIHC	TCGA-G3-A3CJ-01	TRIM24	ENST00000343526.4,ENST00000497516.1,ENST00000415680.2	chr7	138209985:138210102:138213860:138213975:138223401:138223548,	138213861	138213975	138213943	138213943	Frame_Shift_Del	A	-	p.K323fs
LIHC	TCGA-G3-A3CJ-01	TRIM24	ENST00000343526.4,ENST00000493595.1,ENST00000415680.2	chr7	138252225:138252399:138255574:138255748:138258251:138258387,	138255575	138255748	138255679	138255679	Frame_Shift_Del	T	-	p.A603fs
LIHC	TCGA-G3-A3CJ-01	TRIM24	ENST00000343526.4,ENST00000415680.2	chr7	138255574:138255748:138258251:138258387:138261117:138261190,	138258252	138258387	138258359	138258359	Frame_Shift_Del	T	-	p.N662fs
LIHC	TCGA-G3-A3CJ-01	KIAA1549	ENST00000422774.1	chr7	138522269:138522905:138524877:138525023:138529061:138529219,	138524878	138525023	138524992	138524992	Frame_Shift_Del	C	-	p.G1828fs
LIHC	TCGA-G3-A3CJ-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138601620	138601620	Frame_Shift_Del	G	-	p.L918fs
LIHC	TCGA-G3-A3CJ-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138602564	138602564	Frame_Shift_Del	A	-	p.F603fs
LIHC	TCGA-G3-A3CJ-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138604068	138604068	Frame_Shift_Del	G	-	p.Q102fs
LIHC	TCGA-G3-A3CJ-01	ZC3HAV1	ENST00000464606.1,ENST00000242351.5	chr7	138738710:138738841:138739950:138740041:138745781:138745884,	138739951	138740041	138739957	138739957	Frame_Shift_Del	T	-	p.K727fs
LIHC	TCGA-G3-A3CJ-01	HIPK2	ENST00000428878.2,ENST00000406875.3	chr7	139259873:139260034:139268562:139268810:139281462:139281744,	139268563	139268810	139268787	139268787	Frame_Shift_Del	T	-	p.N914fs
LIHC	TCGA-G3-A3CJ-01	PARP12	ENST00000491598.1,ENST00000489809.1	chr7	139726003:139726148:139728412:139728488:139734034:139734131,	139728413	139728488	139728468	139728468	Frame_Shift_Del	G	-	p.P481fs
LIHC	TCGA-G3-A3CJ-01	BRAF	ENST00000496384.2	chr7	140419126:140426316:140434416:140434570:140439611:140439746,	140434417	140434570	140434525	140434525	Frame_Shift_Del	G	-	p.H725fs
LIHC	TCGA-G3-A3CJ-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141799412:141799537:141800601:141800690:141802429:141802479,	141800602	141800690	141800654	141800654	Frame_Shift_Del	G	-	p.G2644fs
LIHC	TCGA-G3-A3CJ-01	EPHB6	ENST00000411471.2,ENST00000422643.1,ENST00000425995.1,ENST00000466783.1,ENST00000486511.1,ENST00000442129.1,ENST00000392957.2	chr7	142568056:142568160:142568282:142568438:142568548:142568840,	142568283	142568438	142568338	142568338	Frame_Shift_Del	C	-	p.P953fs
LIHC	TCGA-G3-A3CJ-01	ZYX	ENST00000468083.1	chr7	143078387:143078502:143078649:143078872:143079340:143079403,	143078650	143078872	143078756	143078756	Frame_Shift_Del	C	-	p.A31fs
LIHC	TCGA-G3-A3CJ-01	ZYX	ENST00000449423.2,ENST00000354434.4	chr7	143079340:143079540:143079893:143080415:143085311:143085432,	143079894	143080415	143079966	143079966	Frame_Shift_Del	G	-	p.G193fs
LIHC	TCGA-G3-A3CJ-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098162	144098162	Frame_Shift_Del	T	-	p.K274fs
LIHC	TCGA-G3-A3CJ-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098189	144098189	Frame_Shift_Del	G	-	p.P265fs
LIHC	TCGA-G3-A3CJ-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098496	144098496	Frame_Shift_Del	G	-	p.R163fs
LIHC	TCGA-G3-A3CJ-01	EZH2	ENST00000460911.1,ENST00000350995.2,ENST00000492143.1,ENST00000320356.2,ENST00000483967.1	chr7	148508716:148508812:148511050:148511229:148512597:148512638,148508716:148508812:148511050:148511229:148512005:148512131,	148511051	148511229	148511094	148511094	Frame_Shift_Del	T	-	p.N603fs
LIHC	TCGA-G3-A3CJ-01	EZH2	ENST00000460911.1,ENST00000350995.2,ENST00000492143.1,ENST00000320356.2,ENST00000483967.1	chr7	148511050:148511229:148512005:148512131:148512597:148512638,	148512006	148512131	148512097	148512097	Frame_Shift_Del	G	-	p.P527fs
LIHC	TCGA-G3-A3CJ-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000320356.2,ENST00000541220.1,ENST00000483967.1	chr7	148512597:148512638:148513775:148513870:148514313:148514483,	148513776	148513870	148513859	148513859	Frame_Shift_Del	A	-	p.F474fs
LIHC	TCGA-G3-A3CJ-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000320356.2,ENST00000541220.1,ENST00000483967.1	chr7	148513775:148513870:148514313:148514483:148514968:148515209,	148514314	148514483	148514389	148514389	Frame_Shift_Del	A	-	p.F445fs
LIHC	TCGA-G3-A3CJ-01	PDIA4	ENST00000286091.4,ENST00000466592.1	chr7	148701290:148701301:148702232:148702466:148702988:148703145,	148702233	148702466	148702444	148702444	Frame_Shift_Del	T	-	p.K437fs
LIHC	TCGA-G3-A3CJ-01	ZNF398	ENST00000420008.2,ENST00000475153.1	chr7	148844567:148844858:148851036:148851432:148863249:148863327,	148851037	148851432	148851076	148851076	Frame_Shift_Del	C	-	p.P22fs
LIHC	TCGA-G3-A3CJ-01	ZNF398	ENST00000420008.2,ENST00000475153.1	chr7	148844567:148844858:148851036:148851432:148863249:148863327,	148851037	148851432	148851277	148851277	Frame_Shift_Del	G	-	p.G89fs
LIHC	TCGA-G3-A3CJ-01	KRBA1	ENST00000496259.1,ENST00000485033.2,ENST00000255992.10,ENST00000479560.1,ENST00000319551.8,ENST00000496080.1,ENST00000466546.1	chr7	149420824:149420980:149421742:149421940:149422405:149422532,	149421743	149421940	149421834	149421834	Frame_Shift_Del	C	-	p.S340fs
LIHC	TCGA-G3-A3CJ-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559011	149559011	Frame_Shift_Del	G	-	p.R921fs
LIHC	TCGA-G3-A3CJ-01	RARRES2	ENST00000466675.1,ENST00000478771.1,ENST00000223271.3	chr7	150035446:150035528:150035703:150035830:150036074:150036168,	150035704	150035830	150035739	150035739	Frame_Shift_Del	A	-	p.F156fs
LIHC	TCGA-G3-A3CJ-01	AOC1	ENST00000416793.2,ENST00000360937.4	chr7	150549606:150549646:150553542:150555128:150555850:150556136,	150553543	150555128	150553623	150553623	Frame_Shift_Del	C	-	p.S22fs
LIHC	TCGA-G3-A3CJ-01	AOC1	ENST00000416793.2,ENST00000360937.4	chr7	150549606:150549646:150553542:150555128:150555850:150556136,	150553543	150555128	150554896	150554896	Frame_Shift_Del	G	-	p.K446fs
LIHC	TCGA-G3-A3CJ-01	NOS3	ENST00000297494.3,ENST00000461406.1,ENST00000468293.1,ENST00000477227.1	chr7	150707986:150708074:150709438:150709560:150710318:150710466,	150709439	150709560	150709510	150709510	Frame_Shift_Del	C	-	p.A1019fs
LIHC	TCGA-G3-A3CJ-01	NOS3	ENST00000297494.3,ENST00000461406.1,ENST00000468293.1,ENST00000477227.1	chr7	150707986:150708074:150709438:150709560:150710318:150710466,	150709439	150709560	150709519	150709519	Frame_Shift_Del	G	-	p.R1022fs
LIHC	TCGA-G3-A3CJ-01	ABCB8	ENST00000498578.1	chr7	150739047:150739195:150741057:150741233:150742295:150742496,	150741058	150741233	150741109	150741109	Frame_Shift_Del	C	-	p.A606fs
LIHC	TCGA-G3-A3CJ-01	ABCB8	ENST00000482899.1,ENST00000542328.1,ENST00000358849.4,ENST00000482309.1,ENST00000297504.6,ENST00000466514.1,ENST00000356058.4	chr7	150739047:150739195:150741057:150741308:150742295:150742496,	150741058	150741308	150741109	150741109	Frame_Shift_Del	C	-	p.A606fs
LIHC	TCGA-G3-A3CJ-01	ASIC3	ENST00000468325.1,ENST00000297512.8,ENST00000357922.4,ENST00000490540.1,ENST00000485929.1,ENST00000377904.4,ENST00000498105.1,ENST00000349064.5	chr7	150748896:150748988:150749069:150749149:150749252:150749324,	150749070	150749149	150749078	150749078	Frame_Shift_Del	G	-	p.G440fs
LIHC	TCGA-G3-A3CJ-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150769090:150769223:150771125:150771380:150771485:150771575,	150771126	150771380	150771140	150771140	Frame_Shift_Del	C	-	p.H850fs
LIHC	TCGA-G3-A3CJ-01	FASTK	ENST00000460980.1,ENST00000482806.1,ENST00000467237.1,ENST00000469237.1,ENST00000483953.1,ENST00000297532.6,ENST00000353841.2	chr7	150774965:150775179:150775648:150775788:150775928:150775998,	150775649	150775788	150775729	150775729	Frame_Shift_Del	G	-	p.R249fs
LIHC	TCGA-G3-A3CJ-01	CHPF2	ENST00000465601.1	chr7	150932536:150932698:150933493:150933676:150934459:150934679,150932536:150932698:150933493:150933676:150934041:150934258,	150933494	150933676	150933596	150933596	Frame_Shift_Del	G	-	p.G311fs
LIHC	TCGA-G3-A3CJ-01	NUB1	ENST00000483358.1,ENST00000468404.1,ENST00000413040.2,ENST00000355851.4,ENST00000470229.1,ENST00000566856.1,ENST00000568733.1,ENST00000470316.1	chr7	151042433:151042552:151046158:151046326:151048509:151048568,	151046159	151046326	151046278	151046278	Frame_Shift_Del	A	-	p.T104fs
LIHC	TCGA-G3-A3CJ-01	PRKAG2	ENST00000392801.2,ENST00000418337.2,ENST00000492843.1,ENST00000433631.2,ENST00000287878.4	chr7	151262805:151262971:151265801:151265928:151267256:151267311,	151265802	151265928	151265828	151265828	Frame_Shift_Del	T	-	p.R403fs
LIHC	TCGA-G3-A3CJ-01	KMT2C	ENST00000558084.1,ENST00000262189.6	chr7	151853289:151853431:151855947:151856157:151859201:151859249,	151855948	151856157	151856125	151856125	Frame_Shift_Del	A	-	p.F3831fs
LIHC	TCGA-G3-A3CJ-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151877795:151879679:151880058:151880241:151882642:151882716,	151880059	151880241	151880236	151880236	Frame_Shift_Del	T	-	p.K1696fs
LIHC	TCGA-G3-A3CJ-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151904384:151904513:151917607:151917820:151919085:151919151,	151917608	151917820	151917661	151917661	Frame_Shift_Del	G	-	p.P1221fs
LIHC	TCGA-G3-A3CJ-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151917607:151917820:151919085:151919151:151919657:151919767,	151919086	151919151	151919099	151919099	Frame_Shift_Del	T	-	p.K1162fs
LIHC	TCGA-G3-A3CJ-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151932901:151933018:151935791:151935911:151944986:151945104,	151935792	151935911	151935896	151935896	Frame_Shift_Del	G	-	p.H850fs
LIHC	TCGA-G3-A3CJ-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2	chr7	151949630:151949800:151960100:151960215:151962122:151962294,	151960101	151960215	151960151	151960151	Frame_Shift_Del	A	-	p.C417fs
LIHC	TCGA-G3-A3CJ-01	ACTR3B	ENST00000397282.2	chr7	152480271:152480327:152497615:152497740:152498705:152498816,152456913:152457011:152497615:152497740:152498705:152498816,	152497616	152497740	152497638	152497638	Frame_Shift_Del	A	-	p.A41fs
LIHC	TCGA-G3-A3CJ-01	INSIG1	ENST00000340368.4	chr7	155090270:155090407:155094456:155094556:155099950:155100467,155093960:155094127:155094456:155094556:155099950:155100467,	155094457	155094556	155094465	155094465	Frame_Shift_Del	C	-	p.S238fs
LIHC	TCGA-G3-A3CJ-01	RBM33	ENST00000392761.3,ENST00000401878.3	chr7	155530753:155531097:155532408:155532720:155534512:155534800,	155532409	155532720	155532430	155532430	Frame_Shift_Del	C	-	p.P589fs
LIHC	TCGA-G3-A3CJ-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556532	155556532	Frame_Shift_Del	C	-	p.H1002fs
LIHC	TCGA-G3-A3CJ-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556532	155556532	Frame_Shift_Del	C	-	p.H1002fs
LIHC	TCGA-G3-A3CJ-01	LMBR1	ENST00000485985.1,ENST00000444719.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1	chr7	156626446:156626486:156629506:156629579:156685621:156685681,	156629507	156629579	156629543	156629543	Frame_Shift_Del	A	-	p.S35fs
LIHC	TCGA-G3-A3CJ-01	UBE3C	ENST00000348165.5	chr7	157000396:157000629:157009560:157009665:157013382:157013470,	157009561	157009665	157009611	157009611	Frame_Shift_Del	T	-	p.N620fs
LIHC	TCGA-G3-A3CJ-01	UBE3C	ENST00000348165.5,ENST00000470408.1	chr7	157023773:157024021:157041061:157041274:157046647:157046836,	157041062	157041274	157041239	157041239	Frame_Shift_Del	T	-	p.F887fs
LIHC	TCGA-G3-A3CJ-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157387929:157388007:157396693:157396767:157414053:157414201,	157396694	157396767	157396697	157396697	Frame_Shift_Del	G	-	p.P776fs
LIHC	TCGA-G3-A3CJ-01	PTPRN2	ENST00000389413.3,ENST00000389416.4,ENST00000389418.4,ENST00000409483.1,ENST00000404321.2	chr7	157414053:157414201:157449048:157449243:157475416:157475629,	157449049	157449243	157449136	157449136	Frame_Shift_Del	G	-	p.P674fs
LIHC	TCGA-G3-A3CJ-01	ESYT2	ENST00000251527.5,ENST00000435514.2,ENST00000275418.7	chr7	158531713:158531812:158534213:158534587:158536219:158536369,	158534214	158534587	158534391	158534391	Frame_Shift_Del	T	-	p.K691fs
LIHC	TCGA-G3-A3CJ-01	WDR60	ENST00000444851.1,ENST00000407559.3	chr7	158695066:158695286:158698679:158698782:158704240:158704370,	158698680	158698782	158698719	158698719	Frame_Shift_Del	T	-	p.I466fs
LIHC	TCGA-G3-A3CJ-01	FBXO25	ENST00000382824.1,ENST00000350302.3,ENST00000352684.2,ENST00000276326.5	chr8	401268:401453:408368:408551:413006:413150,	408369	408551	408475	408475	Frame_Shift_Del	C	-	p.T189fs
LIHC	TCGA-G3-A3CJ-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
LIHC	TCGA-G3-A3CJ-01	FDFT1	ENST00000525283.1	chr8	11660292:11660440:11667300:11667359:11679258:11679327,	11667301	11667359	11667335	11667335	Frame_Shift_Del	C	-	p.R119fs
LIHC	TCGA-G3-A3CJ-01	FDFT1	ENST00000529464.1	chr8	11660292:11660440:11667175:11667359:11679258:11679327,	11667176	11667359	11667335	11667335	Frame_Shift_Del	C	-	p.R119fs
LIHC	TCGA-G3-A3CJ-01	FAM86B1	ENST00000431227.3,ENST00000448228.2,ENST00000533852.2,ENST00000526708.2	chr8	12043004:12043034:12043860:12044126:12044208:12044342,	12043861	12044126	12044059	12044059	Frame_Shift_Del	G	-	p.R148fs
LIHC	TCGA-G3-A3CJ-01	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943798:12943972:12945995:12946213:12947760:12947979,	12945996	12946213	12946078	12946078	Frame_Shift_Del	T	-	p.I1404fs
LIHC	TCGA-G3-A3CJ-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13356726	13356726	Frame_Shift_Del	G	-	p.P285fs
LIHC	TCGA-G3-A3CJ-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17402081	17402081	Frame_Shift_Del	T	-	p.D206fs
LIHC	TCGA-G3-A3CJ-01	MTUS1	ENST00000520196.1,ENST00000519263.1,ENST00000544260.1,ENST00000522149.1,ENST00000517721.1,ENST00000381869.3,ENST00000262102.6,ENST00000524044.1,ENST00000518138.1,ENST00000381861.3,ENST00000521882.1	chr8	17541983:17542051:17570722:17570761:17573275:17573410,	17570723	17570761	17570746	17570746	Frame_Shift_Del	T	-	p.N813fs
LIHC	TCGA-G3-A3CJ-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19297387:19297442:19315936:19316153:19362711:19363641,	19315937	19316153	19315974	19315974	Frame_Shift_Del	T	-	p.R272fs
LIHC	TCGA-G3-A3CJ-01	ATP6V1B2	ENST00000276390.2,ENST00000523478.1,ENST00000519667.1,ENST00000520830.1,ENST00000523482.1	chr8	20067856:20067950:20068079:20068157:20068687:20068765,	20068080	20068157	20068102	20068102	Frame_Shift_Del	A	-	p.G136fs
LIHC	TCGA-G3-A3CJ-01	HR	ENST00000381418.4,ENST00000518461.1,ENST00000312841.8	chr8	21978577:21978741:21979125:21979207:21980302:21980364,21978577:21978741:21979125:21979207:21980005:21980121,	21979126	21979207	21979182	21979182	Frame_Shift_Del	G	-	p.P716fs
LIHC	TCGA-G3-A3CJ-01	BIN3	ENST00000399977.4	chr8	22487954:22488091:22494434:22494475:22502267:22502316,	22494435	22494475	22494454	22494454	Frame_Shift_Del	C	-	p.E27fs
LIHC	TCGA-G3-A3CJ-01	TNFRSF10A	ENST00000221132.3,ENST00000524158.1	chr8	23058017:23058113:23058199:23058273:23059320:23059432,	23058200	23058273	23058207	23058207	Frame_Shift_Del	T	-	p.K232fs
LIHC	TCGA-G3-A3CJ-01	ADAM28	ENST00000397649.3,ENST00000437154.2,ENST00000520448.1,ENST00000265769.4	chr8	24168873:24168950:24170900:24171093:24177748:24177815,	24170901	24171093	24171002	24171002	Frame_Shift_Del	A	-	p.E162fs
LIHC	TCGA-G3-A3CJ-01	KCTD9	ENST00000518997.1,ENST00000521458.1	chr8	25298139:25298189:25303644:25303766:25315714:25315796,25301807:25301851:25303644:25303766:25315714:25315796,	25303645	25303766	25303708	25303708	Frame_Shift_Del	C	-	p.G36fs
LIHC	TCGA-G3-A3CJ-01	KCTD9	ENST00000519665.1	chr8	25298092:25298189:25303595:25303766:25315714:25315796,	25303596	25303766	25303708	25303708	Frame_Shift_Del	C	-	p.G36fs
LIHC	TCGA-G3-A3CJ-01	PTK2B	ENST00000412793.1,ENST00000420218.2,ENST00000544172.1,ENST00000346049.5,ENST00000338238.4,ENST00000517339.1,ENST00000397501.1	chr8	27278173:27278261:27279820:27279900:27287609:27287672,	27279821	27279900	27279873	27279873	Frame_Shift_Del	C	-	p.A175fs
LIHC	TCGA-G3-A3CJ-01	PBK	ENST00000522944.1,ENST00000301905.4,ENST00000521226.1	chr8	27679835:27680005:27680579:27680722:27685621:27685715,	27680580	27680722	27680609	27680609	Frame_Shift_Del	A	-	p.L89fs
LIHC	TCGA-G3-A3CJ-01	NUGGC	ENST00000341513.6,ENST00000413272.2	chr8	27922038:27922248:27925030:27925261:27925732:27925955,	27925031	27925261	27925075	27925075	Frame_Shift_Del	T	-	p.R223fs
LIHC	TCGA-G3-A3CJ-01	KIF13B	ENST00000524189.1	chr8	28966950:28967028:28967434:28967587:28970979:28971072,	28967435	28967587	28967529	28967529	Frame_Shift_Del	T	-	p.N1330fs
LIHC	TCGA-G3-A3CJ-01	GSR	ENST00000521479.1,ENST00000221130.5,ENST00000520888.1,ENST00000541648.1,ENST00000546342.1,ENST00000537535.1,ENST00000414019.1	chr8	30557597:30557652:30560609:30560757:30565588:30565658,	30560610	30560757	30560681	30560681	Frame_Shift_Del	T	-	p.K190fs
LIHC	TCGA-G3-A3CJ-01	FUT10	ENST00000327671.5,ENST00000524021.1,ENST00000518672.1	chr8	33230161:33230322:33246480:33247316:33310733:33311028,	33246481	33247316	33246703	33246703	Frame_Shift_Del	G	-	p.P330fs
LIHC	TCGA-G3-A3CJ-01	BRF2	ENST00000520601.1	chr8	37704573:37704693:37706113:37706173:37707147:37707356,	37706114	37706173	37706147	37706147	Frame_Shift_Del	C	-	p.E61fs
LIHC	TCGA-G3-A3CJ-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37729021	37729021	Frame_Shift_Del	G	-	p.P1100fs
LIHC	TCGA-G3-A3CJ-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730181	37730181	Frame_Shift_Del	T	-	p.K713fs
LIHC	TCGA-G3-A3CJ-01	LSM1	ENST00000520286.1,ENST00000311351.4,ENST00000522515.1	chr8	38021127:38021358:38027319:38027435:38029482:38029546,	38027320	38027435	38027386	38027386	Frame_Shift_Del	T	-	p.K55fs
LIHC	TCGA-G3-A3CJ-01	DDHD2	ENST00000520272.2,ENST00000397166.2,ENST00000527834.1,ENST00000527415.1,ENST00000532222.1,ENST00000519857.1,ENST00000529642.1	chr8	38090656:38090732:38091911:38092102:38095055:38095103,	38091912	38092102	38092045	38092045	Frame_Shift_Del	G	-	p.K118fs
LIHC	TCGA-G3-A3CJ-01	DDHD2	ENST00000528358.1	chr8	38090656:38090732:38091917:38092102:38095055:38095103,	38091918	38092102	38092045	38092045	Frame_Shift_Del	G	-	p.K118fs
LIHC	TCGA-G3-A3CJ-01	FGFR1	ENST00000425967.3,ENST00000356207.5,ENST00000397091.5,ENST00000532791.1,ENST00000326324.6,ENST00000447712.2,ENST00000397108.4,ENST00000397113.2,ENST00000487647.1,ENST00000335922.5,ENST00000526570.1	chr8	38277056:38277253:38279314:38279459:38282026:38282139,	38279315	38279459	38279384	38279384	Frame_Shift_Del	C	-	p.E338fs
LIHC	TCGA-G3-A3CJ-01	FGFR1	ENST00000484370.1	chr8	38285880:38285953:38287199:38287466:38314873:38314964,38285880:38285953:38287199:38287466:38297823:38297891,38286833:38286908:38287199:38287466:38314873:38314964,	38287200	38287466	38287240	38287240	Frame_Shift_Del	G	-	p.P106fs
LIHC	TCGA-G3-A3CJ-01	FGFR1	ENST00000484370.1	chr8	38285880:38285953:38287199:38287466:38314873:38314964,38285880:38285953:38287199:38287466:38297823:38297891,38286833:38286908:38287199:38287466:38314873:38314964,	38287200	38287466	38287308	38287308	Frame_Shift_Del	C	-	p.E85fs
LIHC	TCGA-G3-A3CJ-01	TACC1	ENST00000524354.1	chr8	38599868:38599969:38645074:38645261:38646221:38646337,38643193:38643254:38645074:38645261:38646221:38646337,	38645075	38645261	38645146	38645146	Frame_Shift_Del	A	-	p.K16fs
LIHC	TCGA-G3-A3CJ-01	ADAM32	ENST00000522506.1,ENST00000399831.3,ENST00000379907.4,ENST00000519315.1	chr8	38965291:38965352:38975604:38975684:38994175:38994237,	38975605	38975684	38975643	38975643	Frame_Shift_Del	A	-	p.K33fs
LIHC	TCGA-G3-A3CJ-01	ZMAT4	ENST00000297737.6	chr8	40388112:40389757:40438683:40438780:40554763:40554856,40389543:40389757:40438683:40438780:40532222:40532450,	40438684	40438780	40438704	40438704	Frame_Shift_Del	T	-	p.K218fs
LIHC	TCGA-G3-A3CJ-01	ANK1	ENST00000524227.1	chr8	41529871:41529944:41530033:41530430:41542061:41542208,	41530034	41530430	41530266	41530266	Frame_Shift_Del	C	-	p.V1568fs
LIHC	TCGA-G3-A3CJ-01	PLAT	ENST00000524009.1	chr8	42040236:42040408:42045423:42045534:42046451:42046579,	42045424	42045534	42045471	42045471	Frame_Shift_Del	A	-	p.F106fs
LIHC	TCGA-G3-A3CJ-01	IKBKB	ENST00000520201.1,ENST00000517917.1,ENST00000520835.1,ENST00000519735.1,ENST00000520655.1,ENST00000517890.1,ENST00000416505.2,ENST00000523105.1,ENST00000521661.1,ENST00000342222.2,ENST00000518647.1,ENST00000520810.1,ENST00000523517.1	chr8	42162704:42162793:42163860:42163950:42166418:42166450,	42163861	42163950	42163932	42163932	Frame_Shift_Del	G	-	p.V183fs
LIHC	TCGA-G3-A3CJ-01	IKBKB	ENST00000519733.1,ENST00000517388.1	chr8	42162704:42162793:42163885:42163950:42166418:42166450,	42163886	42163950	42163932	42163932	Frame_Shift_Del	G	-	p.V183fs
LIHC	TCGA-G3-A3CJ-01	SMIM19	ENST00000414154.2	chr8	42396804:42397516:42401611:42401749:42403798:42403923,42396935:42397298:42401611:42401749:42403798:42403923,42396800:42396848:42401611:42401749:42403798:42403923,	42401612	42401749	42401656	42401656	Frame_Shift_Del	T	-	p.I14fs
LIHC	TCGA-G3-A3CJ-01	SPIDR	ENST00000521214.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48203641:48203726:48308935:48309186:48352884:48352959,48203641:48203726:48308935:48309186:48320422:48320523,48206455:48206619:48308935:48309186:48320422:48320523,	48308936	48309186	48309159	48309159	Frame_Shift_Del	A	-	p.E250fs
LIHC	TCGA-G3-A3CJ-01	SPIDR	ENST00000521214.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48203641:48203726:48308935:48309186:48352884:48352959,48203641:48203726:48308935:48309186:48320422:48320523,48206455:48206619:48308935:48309186:48320422:48320523,	48308936	48309186	48309163	48309163	Frame_Shift_Del	T	-	p.N251fs
LIHC	TCGA-G3-A3CJ-01	SPIDR	ENST00000521214.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1	chr8	48508372:48508568:48511507:48511758:48586362:48586503,	48511508	48511758	48511579	48511579	Frame_Shift_Del	C	-	p.I455fs
LIHC	TCGA-G3-A3CJ-01	SPIDR	ENST00000519362.1,ENST00000521214.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1	chr8	48626091:48626203:48639761:48639855:48647868:48647889,48626091:48626203:48639761:48639855:48641494:48641609,	48639762	48639855	48639771	48639771	Frame_Shift_Del	T	-	p.V784fs
LIHC	TCGA-G3-A3CJ-01	SPIDR	ENST00000518074.1	chr8	48639814:48639855:48641494:48641664:48647868:48647889,	48641495	48641664	48641502	48641502	Frame_Shift_Del	T	-	p.F815fs
LIHC	TCGA-G3-A3CJ-01	SPIDR	ENST00000519362.1,ENST00000521214.1,ENST00000517619.1,ENST00000519141.1,ENST00000518060.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1	chr8	48639814:48639855:48641494:48641609:48641973:48642027,	48641495	48641609	48641502	48641502	Frame_Shift_Del	T	-	p.F815fs
LIHC	TCGA-G3-A3CJ-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2,ENST00000536483.1	chr8	48686694:48686938:48689404:48689544:48690246:48690435,	48689405	48689544	48689518	48689518	Frame_Shift_Del	T	-	p.K4022fs
LIHC	TCGA-G3-A3CJ-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48775959:48776138:48777116:48777324:48790284:48790412,	48777117	48777324	48777257	48777257	Frame_Shift_Del	G	-	p.R1810fs
LIHC	TCGA-G3-A3CJ-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48798504:48798708:48800107:48800266:48801078:48801211,	48800108	48800266	48800117	48800117	Frame_Shift_Del	A	-	p.F1520fs
LIHC	TCGA-G3-A3CJ-01	PRKDC	ENST00000540819.1,ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48866909:48867006:48868433:48868508:48869730:48869823,	48868434	48868508	48868460	48868460	Frame_Shift_Del	T	-	p.I125fs
LIHC	TCGA-G3-A3CJ-01	SNTG1	ENST00000276467.5,ENST00000517473.1,ENST00000520825.1,ENST00000522124.1,ENST00000518864.1,ENST00000524004.1	chr8	51465609:51465739:51503438:51503477:51569468:51569585,	51503439	51503477	51503442	51503442	Frame_Shift_Del	A	-	p.K273fs
LIHC	TCGA-G3-A3CJ-01	PCMTD1	ENST00000360540.5,ENST00000522514.1	chr8	52746077:52746249:52758220:52758323:52773404:52773444,	52758221	52758323	52758259	52758259	Frame_Shift_Del	T	-	p.K124fs
LIHC	TCGA-G3-A3CJ-01	PCMTD1	ENST00000522514.1	chr8	52758220:52758323:52773404:52773806:52811489:52811530,	52773405	52773806	52773547	52773547	Frame_Shift_Del	G	-	p.A55fs
LIHC	TCGA-G3-A3CJ-01	TCEA1	ENST00000396401.3,ENST00000521604.2,ENST00000522635.1	chr8	54879729:54880672:54882951:54883023:54891584:54891731,	54882952	54883023	54882962	54882962	Frame_Shift_Del	T	-	p.N296fs
LIHC	TCGA-G3-A3CJ-01	MRPL15	ENST00000260102.4,ENST00000522521.1	chr8	55049827:55049993:55055222:55055346:55059941:55060104,	55055223	55055346	55055296	55055296	Frame_Shift_Del	A	-	p.E168fs
LIHC	TCGA-G3-A3CJ-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56699046	56699046	Frame_Shift_Del	A	-	p.K197fs
LIHC	TCGA-G3-A3CJ-01	TGS1	ENST00000260129.5,ENST00000519494.1,ENST00000523948.1	chr8	56702740:56702858:56705256:56705343:56708536:56708711,	56705257	56705343	56705277	56705277	Frame_Shift_Del	A	-	p.E434fs
LIHC	TCGA-G3-A3CJ-01	TGS1	ENST00000260129.5,ENST00000519494.1,ENST00000523948.1	chr8	56705256:56705343:56708536:56708711:56711472:56711557,	56708537	56708711	56708549	56708549	Frame_Shift_Del	C	-	p.I460fs
LIHC	TCGA-G3-A3CJ-01	LYN	ENST00000520220.2	chr8	56854413:56854550:56859006:56859052:56860176:56860282,56854413:56854487:56859006:56859052:56860176:56860282,	56859007	56859052	56859023	56859023	Frame_Shift_Del	T	-	p.L30fs
LIHC	TCGA-G3-A3CJ-01	CHCHD7	ENST00000523532.1,ENST00000521982.1,ENST00000523667.1,ENST00000396723.5,ENST00000303759.3	chr8	57124368:57124396:57125320:57125468:57127156:57127226,	57125321	57125468	57125436	57125436	Frame_Shift_Del	A	-	p.Q3fs
LIHC	TCGA-G3-A3CJ-01	CHCHD7	ENST00000523975.1,ENST00000521524.1,ENST00000518801.1	chr8	57124368:57124396:57125320:57125448:57127156:57127226,	57125321	57125448	57125436	57125436	Frame_Shift_Del	A	-	p.Q3fs
LIHC	TCGA-G3-A3CJ-01	SDR16C5	ENST00000396721.2,ENST00000303749.3	chr8	57213859:57214132:57218155:57218281:57219234:57219379,	57218156	57218281	57218232	57218232	Frame_Shift_Del	T	-	p.I210fs
LIHC	TCGA-G3-A3CJ-01	CA8	ENST00000524872.1,ENST00000317995.4	chr8	61139431:61139494:61144842:61144938:61178483:61178608,	61144843	61144938	61144882	61144882	Frame_Shift_Del	C	-	p.G158fs
LIHC	TCGA-G3-A3CJ-01	CHD7	ENST00000525508.1,ENST00000423902.2	chr8	61693558:61693989:61707544:61707686:61712946:61713084,	61707545	61707686	61707616	61707616	Frame_Shift_Del	A	-	p.E723fs
LIHC	TCGA-G3-A3CJ-01	ASPH	ENST00000379454.4,ENST00000541428.1	chr8	62465589:62465679:62468482:62468581:62475302:62475439,	62468483	62468581	62468507	62468507	Frame_Shift_Del	A	-	p.I475fs
LIHC	TCGA-G3-A3CJ-01	ASPH	ENST00000379454.4,ENST00000518068.1,ENST00000518306.1,ENST00000356457.5,ENST00000541428.1	chr8	62566126:62566219:62593526:62593595:62596597:62596747,	62593527	62593595	62593532	62593532	Frame_Shift_Del	A	-	p.L78fs
LIHC	TCGA-G3-A3CJ-01	ARMC1	ENST00000276569.3,ENST00000518908.1,ENST00000519352.1	chr8	66525572:66525668:66534497:66534589:66539450:66539668,	66534498	66534589	66534510	66534510	Frame_Shift_Del	T	-	p.N88fs
LIHC	TCGA-G3-A3CJ-01	MCMDC2	ENST00000541540.1,ENST00000313616.5,ENST00000428734.1,ENST00000422365.2,ENST00000396592.3,ENST00000415737.1	chr8	67793083:67793209:67795991:67796229:67803099:67803305,	67795992	67796229	67796116	67796116	Frame_Shift_Del	T	-	p.N320fs
LIHC	TCGA-G3-A3CJ-01	PPP1R42	ENST00000522909.1,ENST00000324682.5	chr8	67925192:67925331:67926660:67926827:67929853:67930066,	67926661	67926827	67926715	67926715	Frame_Shift_Del	T	-	p.N82fs
LIHC	TCGA-G3-A3CJ-01	CSPP1	ENST00000521324.1,ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68092097:68092161:68102884:68102994:68107616:68107753,68092097:68092161:68102884:68102994:68105698:68105812,	68102885	68102994	68102928	68102928	Frame_Shift_Del	C	-	p.L1083fs
LIHC	TCGA-G3-A3CJ-01	CSPP1	ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68102884:68102994:68105698:68105837:68107616:68107753,	68105699	68105837	68105740	68105740	Frame_Shift_Del	A	-	p.L1119fs
LIHC	TCGA-G3-A3CJ-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128856	68128856	Frame_Shift_Del	G	-	p.P1554fs
LIHC	TCGA-G3-A3CJ-01	PREX2	ENST00000529398.1,ENST00000517617.1,ENST00000288368.4	chr8	69002813:69002950:69005839:69005957:69009251:69009436,	69005840	69005957	69005912	69005912	Frame_Shift_Del	C	-	p.P776fs
LIHC	TCGA-G3-A3CJ-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.G74fs
LIHC	TCGA-G3-A3CJ-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70515426:70515555:70515834:70515891:70517037:70517167,	70515835	70515891	70515861	70515861	Frame_Shift_Del	T	-	p.I406fs
LIHC	TCGA-G3-A3CJ-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71068205:71069475:71071739:71071887:71074945:71075089,	71071740	71071887	71071846	71071846	Frame_Shift_Del	A	-	p.S340fs
LIHC	TCGA-G3-A3CJ-01	TRAM1	ENST00000262213.2,ENST00000521425.1,ENST00000521049.1,ENST00000536748.1	chr8	71495940:71496028:71499129:71499234:71499340:71499411,	71499130	71499234	71499192	71499192	Frame_Shift_Del	A	-	p.F142fs
LIHC	TCGA-G3-A3CJ-01	TRAM1	ENST00000262213.2,ENST00000521425.1,ENST00000536748.1	chr8	71499340:71499411:71506740:71506825:71508497:71508556,	71506741	71506825	71506808	71506808	Frame_Shift_Del	A	-	p.F82fs
LIHC	TCGA-G3-A3CJ-01	LACTB2	ENST00000276590.4,ENST00000522447.1	chr8	71550785:71550864:71553136:71553285:71556299:71556363,	71553137	71553285	71553148	71553148	Frame_Shift_Del	T	-	p.I245fs
LIHC	TCGA-G3-A3CJ-01	STAU2	ENST00000521727.1,ENST00000521210.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000518767.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521451.1,ENST00000523558.1	chr8	74507400:74507532:74515960:74516098:74525978:74526191,	74515961	74516098	74516007	74516007	Frame_Shift_Del	A	-	p.L297fs
LIHC	TCGA-G3-A3CJ-01	STAU2	ENST00000521451.1	chr8	74526161:74526191:74527909:74528042:74529526:74529686,	74527910	74528042	74527913	74527913	Frame_Shift_Del	A	-	p.F193fs
LIHC	TCGA-G3-A3CJ-01	STAU2	ENST00000521727.1,ENST00000521210.1,ENST00000518981.1,ENST00000519961.1,ENST00000521293.1,ENST00000522695.1,ENST00000518767.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000523558.1,ENST00000521447.1	chr8	74526161:74526191:74527909:74528017:74529526:74529686,	74527910	74528017	74527913	74527913	Frame_Shift_Del	A	-	p.F193fs
LIHC	TCGA-G3-A3CJ-01	UBE2W	ENST00000453587.2,ENST00000419880.3,ENST00000517608.1,ENST00000602593.1,ENST00000602969.1	chr8	74722708:74722864:74737381:74737484:74742615:74742707,	74737382	74737484	74737415	74737415	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-G3-A3CJ-01	LY96	ENST00000518893.1,ENST00000284818.2	chr8	74922235:74922364:74939023:74939076:74941190:74941309,	74939024	74939076	74939064	74939064	Frame_Shift_Del	A	-	p.I124fs
LIHC	TCGA-G3-A3CJ-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75156776	75156776	Frame_Shift_Del	T	-	p.K631fs
LIHC	TCGA-G3-A3CJ-01	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75156988	75156988	Frame_Shift_Del	G	-	p.Q561fs
LIHC	TCGA-G3-A3CJ-01	IL7	ENST00000520215.1	chr8	79648708:79648762:79652236:79652317:79710306:79710443,79648708:79648762:79652236:79652317:79710362:79710443,	79652237	79652317	79652264	79652264	Frame_Shift_Del	A	-	p.F67fs
LIHC	TCGA-G3-A3CJ-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81412289	81412289	Frame_Shift_Del	A	-	p.A511fs
LIHC	TCGA-G3-A3CJ-01	ZNF704	ENST00000327835.3	chr8	81571819:81571924:81577049:81577317:81582737:81582838,	81577050	81577317	81577274	81577274	Frame_Shift_Del	A	-	p.Y236fs
LIHC	TCGA-G3-A3CJ-01	ZNF704	ENST00000520336.1,ENST00000327835.3,ENST00000519936.1	chr8	81582827:81582838:81599460:81599693:81605238:81605342,	81599461	81599693	81599466	81599466	Frame_Shift_Del	T	-	p.R185fs
LIHC	TCGA-G3-A3CJ-01	FABP5	ENST00000396359.1,ENST00000297258.6	chr8	82195600:82195773:82196107:82196209:82196748:82197012,	82196108	82196209	82196120	82196120	Frame_Shift_Del	T	-	p.F55fs
LIHC	TCGA-G3-A3CJ-01	IMPA1	ENST00000449740.2,ENST00000523942.1,ENST00000256108.5,ENST00000518188.1,ENST00000523710.1	chr8	82572807:82572902:82583173:82583282:82586075:82586180,	82583174	82583282	82583190	82583190	Frame_Shift_Del	A	-	p.C184fs
LIHC	TCGA-G3-A3CJ-01	IMPA1	ENST00000449740.2	chr8	82593732:82593819:82597997:82598198:82598486:82598517,	82597998	82598198	82598003	82598003	Frame_Shift_Del	T	-	p.M50fs
LIHC	TCGA-G3-A3CJ-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041489	86041489	Frame_Shift_Del	A	-	p.K482fs
LIHC	TCGA-G3-A3CJ-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041562	86041562	Frame_Shift_Del	A	-	p.E505fs
LIHC	TCGA-G3-A3CJ-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041574	86041574	Frame_Shift_Del	A	-	p.E509fs
LIHC	TCGA-G3-A3CJ-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86042153:86042293:86043994:86044196:86047081:86047267,	86043995	86044196	86044017	86044017	Frame_Shift_Del	T	-	p.F578fs
LIHC	TCGA-G3-A3CJ-01	LRRCC1	ENST00000360375.3,ENST00000414626.2	chr8	86050269:86050478:86050572:86050710:86053616:86053752,	86050573	86050710	86050691	86050691	Frame_Shift_Del	A	-	p.K921fs
LIHC	TCGA-G3-A3CJ-01	E2F5	ENST00000518234.1,ENST00000256117.5,ENST00000519128.1,ENST00000521429.1,ENST00000416274.2,ENST00000517476.1	chr8	86119659:86119724:86121376:86121644:86124391:86124439,	86121377	86121644	86121570	86121570	Frame_Shift_Del	A	-	p.Q270fs
LIHC	TCGA-G3-A3CJ-01	ATP6V0D2	ENST00000285393.3	chr8	87125937:87126109:87151685:87151864:87153678:87153758,	87151686	87151864	87151738	87151738	Frame_Shift_Del	A	-	p.K120fs
LIHC	TCGA-G3-A3CJ-01	WWP1	ENST00000518683.1,ENST00000265428.4,ENST00000517970.1	chr8	87393733:87393858:87410570:87410708:87410800:87410867,	87410571	87410708	87410676	87410676	Frame_Shift_Del	A	-	p.E147fs
LIHC	TCGA-G3-A3CJ-01	MMP16	ENST00000286614.6	chr8	89044236:89054023:89058896:89059012:89068355:89068506,	89058897	89059012	89058935	89058935	Frame_Shift_Del	G	-	p.P484fs
LIHC	TCGA-G3-A3CJ-01	RIPK2	ENST00000220751.4,ENST00000522965.1,ENST00000540020.1	chr8	90792315:90792388:90796277:90796367:90798820:90798914,	90796278	90796367	90796314	90796314	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-G3-A3CJ-01	RIPK2	ENST00000220751.4,ENST00000522965.1,ENST00000540020.1	chr8	90792315:90792388:90796277:90796367:90798820:90798914,	90796278	90796367	90796320	90796320	Frame_Shift_Del	A	-	p.K328fs
LIHC	TCGA-G3-A3CJ-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90955586:90955594:90958367:90958523:90960051:90960120,	90958368	90958523	90958387	90958387	Frame_Shift_Del	T	-	p.N684fs
LIHC	TCGA-G3-A3CJ-01	NBN	ENST00000519426.1	chr8	90993602:90993751:90994949:90995083:90996752:90996847,	90994950	90995083	90995037	90995037	Frame_Shift_Del	C	-	p.R28fs
LIHC	TCGA-G3-A3CJ-01	DECR1	ENST00000517761.1	chr8	91018263:91018505:91029351:91029554:91031136:91031194,91013744:91013789:91029351:91029554:91031136:91031194,91013744:91013789:91029351:91029554:91031043:91031194,91017519:91017597:91029351:91029554:91031136:91031194,91027768:91027894:91029351:91029554:91031136:91031194,	91029352	91029554	91029478	91029478	Frame_Shift_Del	G	-	p.G59fs
LIHC	TCGA-G3-A3CJ-01	DECR1	ENST00000517314.1	chr8	91013744:91013789:91029430:91029554:91031136:91031194,	91029431	91029554	91029478	91029478	Frame_Shift_Del	G	-	p.G59fs
LIHC	TCGA-G3-A3CJ-01	DECR1	ENST00000517314.1,ENST00000220764.2,ENST00000523447.1,ENST00000517597.1,ENST00000522161.1	chr8	91033136:91033284:91049068:91049168:91054955:91054976,	91049069	91049168	91049081	91049081	Frame_Shift_Del	T	-	p.L184fs
LIHC	TCGA-G3-A3CJ-01	SLC26A7	ENST00000523719.1,ENST00000276609.3,ENST00000309536.2,ENST00000522181.1	chr8	92352631:92352779:92355580:92355694:92364037:92364115,	92355581	92355694	92355612	92355612	Frame_Shift_Del	T	-	p.V353fs
LIHC	TCGA-G3-A3CJ-01	RUNX1T1	ENST00000519847.1,ENST00000518992.1,ENST00000521375.1	chr8	93029453:93029659:93088192:93088365:93107255:93107463,93074851:93074937:93088192:93088365:93115084:93115135,93074773:93074937:93088192:93088365:93107255:93107463,93029534:93029591:93088192:93088365:93107255:93107399,	93088193	93088365	93088215	93088215	Frame_Shift_Del	T	-	p.K22fs
LIHC	TCGA-G3-A3CJ-01	RUNX1T1	ENST00000519847.1,ENST00000518992.1,ENST00000521375.1	chr8	93029453:93029659:93088192:93088365:93107255:93107463,93074851:93074937:93088192:93088365:93115084:93115135,93074773:93074937:93088192:93088365:93107255:93107463,93029534:93029591:93088192:93088365:93107255:93107399,	93088193	93088365	93088265	93088265	Frame_Shift_Del	T	-	p.R6fs
LIHC	TCGA-G3-A3CJ-01	TMEM67	ENST00000409623.3,ENST00000323130.3,ENST00000452276.1,ENST00000453321.3,ENST00000518319.1,ENST00000455946.1,ENST00000521065.1	chr8	94776069:94776169:94777633:94777703:94777799:94777809,	94777634	94777703	94777660	94777660	Frame_Shift_Del	T	-	p.V178fs
LIHC	TCGA-G3-A3CJ-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95186024:95186224:95186329:95186488:95188768:95188907,	95186330	95186488	95186357	95186357	Frame_Shift_Del	T	-	p.T186fs
LIHC	TCGA-G3-A3CJ-01	DPY19L4	ENST00000414645.2	chr8	95780622:95780781:95782679:95782799:95789893:95790014,	95782680	95782799	95782773	95782773	Frame_Shift_Del	G	-	p.L476fs
LIHC	TCGA-G3-A3CJ-01	INTS8	ENST00000520315.1,ENST00000523731.1,ENST00000523206.1,ENST00000447247.1,ENST00000520526.1	chr8	95871738:95871860:95877733:95877918:95878385:95878419,	95877734	95877918	95877744	95877744	Frame_Shift_Del	T	-	p.L697fs
LIHC	TCGA-G3-A3CJ-01	INTS8	ENST00000343161.4,ENST00000524333.1	chr8	95871738:95871860:95877733:95877928:95878385:95878419,	95877734	95877928	95877744	95877744	Frame_Shift_Del	T	-	p.L697fs
LIHC	TCGA-G3-A3CJ-01	CCNE2	ENST00000523476.1,ENST00000396133.3,ENST00000524224.1,ENST00000308108.4,ENST00000521809.1,ENST00000520509.1	chr8	95897690:95897786:95900154:95900301:95902642:95902686,	95900155	95900301	95900222	95900222	Frame_Shift_Del	T	-	p.K178fs
LIHC	TCGA-G3-A3CJ-01	CPQ	ENST00000220763.5	chr8	97797091:97797558:97847200:97847408:97892025:97892233,	97847201	97847408	97847358	97847358	Frame_Shift_Del	G	-	p.V197fs
LIHC	TCGA-G3-A3CJ-01	MTDH	ENST00000336273.3,ENST00000519934.1	chr8	98699656:98699833:98701265:98701331:98703179:98703266,	98701266	98701331	98701309	98701309	Frame_Shift_Del	A	-	p.G263fs
LIHC	TCGA-G3-A3CJ-01	MTDH	ENST00000336273.3,ENST00000521933.1	chr8	98703358:98703416:98711981:98712080:98718853:98718978,	98711982	98712080	98712030	98712030	Frame_Shift_Del	G	-	p.W366fs
LIHC	TCGA-G3-A3CJ-01	MATN2	ENST00000521689.1,ENST00000518154.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000524308.1,ENST00000522270.1	chr8	99015888:99016011:99019332:99019455:99019706:99019730,	99019333	99019455	99019453	99019453	Frame_Shift_Del	C	-	p.S483fs
LIHC	TCGA-G3-A3CJ-01	MATN2	ENST00000521689.1,ENST00000518154.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000524308.1	chr8	99030221:99030344:99033432:99033555:99039643:99039906,	99033433	99033555	99033447	99033447	Frame_Shift_Del	A	-	p.K612fs
LIHC	TCGA-G3-A3CJ-01	MATN2	ENST00000521689.1,ENST00000518154.1,ENST00000254898.5,ENST00000520016.1,ENST00000522025.2,ENST00000524308.1	chr8	99033437:99033555:99039643:99040057:99042689:99042842,	99039644	99040057	99039856	99039856	Frame_Shift_Del	A	-	p.K720fs
LIHC	TCGA-G3-A3CJ-01	STK3	ENST00000523601.1,ENST00000419617.2	chr8	99466922:99468228:99538969:99539145:99560196:99560389,	99538970	99539145	99539012	99539012	Frame_Shift_Del	A	-	p.F453fs
LIHC	TCGA-G3-A3CJ-01	STK3	ENST00000518165.1,ENST00000518582.1,ENST00000523159.1,ENST00000523601.1,ENST00000419617.2	chr8	99560318:99560389:99591891:99592017:99608259:99608397,	99591892	99592017	99591896	99591896	Frame_Shift_Del	T	-	p.N343fs
LIHC	TCGA-G3-A3CJ-01	VPS13B	ENST00000355155.1,ENST00000358544.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100160068:100160238:100168776:100168971:100182266:100182391,	100168777	100168971	100168807	100168807	Frame_Shift_Del	T	-	p.F682fs
LIHC	TCGA-G3-A3CJ-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100830940:100831116:100831639:100831810:100832148:100832350,	100831640	100831810	100831696	100831696	Frame_Shift_Del	A	-	p.Q2918fs
LIHC	TCGA-G3-A3CJ-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	101008689:101008758:101011489:101011648:101014429:101014592,	101011490	101011648	101011560	101011560	Frame_Shift_Del	T	-	p.N960fs
LIHC	TCGA-G3-A3CJ-01	SPAG1	ENST00000251809.3	chr8	101170262:101170346:101174506:101174648:101178041:101178201,	101174507	101174648	101174537	101174537	Frame_Shift_Del	G	-	p.W10fs
LIHC	TCGA-G3-A3CJ-01	SPAG1	ENST00000251809.3	chr8	101170262:101170346:101174506:101174648:101178041:101178201,	101174507	101174648	101174563	101174563	Frame_Shift_Del	A	-	p.K19fs
LIHC	TCGA-G3-A3CJ-01	RNF19A	ENST00000519449.1,ENST00000341084.2	chr8	101272081:101272225:101273769:101273983:101276261:101276308,	101273770	101273983	101273775	101273775	Frame_Shift_Del	A	-	p.F559fs
LIHC	TCGA-G3-A3CJ-01	RNF19A	ENST00000523255.1	chr8	101276261:101276423:101276898:101277013:101281012:101281148,101273950:101273983:101276898:101277013:101281012:101281148,	101276899	101277013	101276989	101276989	Frame_Shift_Del	C	-	p.D406fs
LIHC	TCGA-G3-A3CJ-01	RNF19A	ENST00000519449.1,ENST00000341084.2	chr8	101282096:101282241:101287180:101287389:101299728:101299765,	101287181	101287389	101287240	101287240	Frame_Shift_Del	A	-	p.L275fs
LIHC	TCGA-G3-A3CJ-01	RNF19A	ENST00000519449.1,ENST00000341084.2	chr8	101282096:101282241:101287180:101287389:101299728:101299765,	101287181	101287389	101287284	101287284	Frame_Shift_Del	G	-	p.P260fs
LIHC	TCGA-G3-A3CJ-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101299847	101299847	Frame_Shift_Del	G	-	p.H186fs
LIHC	TCGA-G3-A3CJ-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101589246:101589303:101596338:101596416:101601093:101601207,	101596339	101596416	101596409	101596409	Frame_Shift_Del	A	-	p.L368fs
LIHC	TCGA-G3-A3CJ-01	PABPC1	ENST00000519100.1,ENST00000318607.5,ENST00000519622.1,ENST00000519596.1,ENST00000519004.1,ENST00000522387.1	chr8	101724609:101724685:101724879:101725017:101725314:101725409,	101724880	101725017	101724975	101724975	Frame_Shift_Del	T	-	p.I261fs
LIHC	TCGA-G3-A3CJ-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103338773:103338891:103339969:103340124:103341317:103341428,	103339970	103340124	103340007	103340007	Frame_Shift_Del	A	-	p.Y482fs
LIHC	TCGA-G3-A3CJ-01	UBR5	ENST00000220959.4,ENST00000520539.1,ENST00000521922.1	chr8	103358463:103358623:103359130:103359320:103372298:103372418,	103359131	103359320	103359189	103359189	Frame_Shift_Del	C	-	p.G173fs
LIHC	TCGA-G3-A3CJ-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663811	103663811	Frame_Shift_Del	G	-	p.P239fs
LIHC	TCGA-G3-A3CJ-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104337273	104337273	Frame_Shift_Del	A	-	p.R313fs
LIHC	TCGA-G3-A3CJ-01	SLC25A32	ENST00000297578.4,ENST00000521645.1,ENST00000523866.1,ENST00000523256.2,ENST00000543107.1	chr8	104412285:104412774:104413743:104413889:104414168:104414282,	104413744	104413889	104413753	104413753	Frame_Shift_Del	T	-	p.K268fs
LIHC	TCGA-G3-A3CJ-01	EIF3H	ENST00000276682.4,ENST00000521861.1,ENST00000518995.1,ENST00000518949.1	chr8	117668143:117668244:117669453:117669553:117671051:117671219,	117669454	117669553	117669464	117669464	Frame_Shift_Del	A	-	p.S183fs
LIHC	TCGA-G3-A3CJ-01	SLC30A8	ENST00000456015.2,ENST00000518521.1	chr8	118147566:118147637:118159192:118159392:118165182:118165214,	118159193	118159392	118159209	118159209	Frame_Shift_Del	A	-	p.K30fs
LIHC	TCGA-G3-A3CJ-01	SLC30A8	ENST00000456015.2,ENST00000518521.1	chr8	118147566:118147637:118159192:118159392:118165182:118165214,	118159193	118159392	118159303	118159303	Frame_Shift_Del	A	-	p.E12fs
LIHC	TCGA-G3-A3CJ-01	MED30	ENST00000522839.1	chr8	118533071:118533292:118540889:118541048:118552121:118552217,	118540890	118541048	118540919	118540919	Frame_Shift_Del	A	-	p.G69fs
LIHC	TCGA-G3-A3CJ-01	MAL2	ENST00000276681.6,ENST00000522112.2,ENST00000521748.1,ENST00000531508.1,ENST00000534619.1	chr8	120233826:120233997:120252404:120252560:120255656:120255762,	120252405	120252560	120252510	120252510	Frame_Shift_Del	G	-	p.G137fs
LIHC	TCGA-G3-A3CJ-01	ENPP2	ENST00000427067.2,ENST00000259486.6,ENST00000518958.1,ENST00000522826.1,ENST00000075322.6	chr8	120631483:120631544:120633633:120633759:120638804:120638960,	120633634	120633759	120633669	120633669	Frame_Shift_Del	C	-	p.G124fs
LIHC	TCGA-G3-A3CJ-01	TAF2	ENST00000378164.2	chr8	120756527:120756633:120758944:120759174:120768245:120768355,	120758945	120759174	120759047	120759047	Frame_Shift_Del	T	-	p.K1002fs
LIHC	TCGA-G3-A3CJ-01	TAF2	ENST00000523904.1,ENST00000378164.2	chr8	120803563:120803699:120805605:120805691:120807771:120807871,	120805606	120805691	120805645	120805645	Frame_Shift_Del	A	-	p.L414fs
LIHC	TCGA-G3-A3CJ-01	TAF2	ENST00000378164.2	chr8	120809901:120810086:120814033:120814265:120816117:120816259,	120814034	120814265	120814125	120814125	Frame_Shift_Del	A	-	p.F234fs
LIHC	TCGA-G3-A3CJ-01	DSCC1	ENST00000313655.4	chr8	120859241:120859320:120862621:120862756:120865286:120865455,	120862622	120862756	120862683	120862683	Frame_Shift_Del	A	-	p.L142fs
LIHC	TCGA-G3-A3CJ-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4	chr8	121295874:121296017:121298099:121298209:121301846:121302005,	121298100	121298209	121298141	121298141	Frame_Shift_Del	G	-	p.G1337fs
LIHC	TCGA-G3-A3CJ-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000440844.1	chr8	121357684:121357802:121379409:121379487:121381568:121381724,	121379410	121379487	121379471	121379471	Frame_Shift_Del	C	-	p.G1713fs
LIHC	TCGA-G3-A3CJ-01	MRPL13	ENST00000306185.3,ENST00000518918.1	chr8	121437545:121437606:121444269:121444363:121455424:121455511,	121444270	121444363	121444290	121444290	Frame_Shift_Del	T	-	p.K75fs
LIHC	TCGA-G3-A3CJ-01	MRPL13	ENST00000306185.3,ENST00000518918.1	chr8	121437545:121437606:121444269:121444363:121455424:121455511,	121444270	121444363	121444352	121444352	Frame_Shift_Del	C	-	p.D55fs
LIHC	TCGA-G3-A3CJ-01	MRPL13	ENST00000306185.3	chr8	121437545:121437606:121455424:121455548:121457307:121457339,121444269:121444363:121455424:121455548:121457307:121457339,	121455425	121455548	121455507	121455507	Frame_Shift_Del	C	-	p.G23fs
LIHC	TCGA-G3-A3CJ-01	SNTB1	ENST00000517992.1,ENST00000519177.1,ENST00000395601.3	chr8	121644849:121644891:121705931:121706148:121823512:121823803,	121705932	121706148	121705978	121705978	Frame_Shift_Del	T	-	p.M248fs
LIHC	TCGA-G3-A3CJ-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123964795	123964795	Frame_Shift_Del	C	-	p.P349fs
LIHC	TCGA-G3-A3CJ-01	DERL1	ENST00000419562.2,ENST00000519018.1,ENST00000259512.4,ENST00000523036.1	chr8	124027685:124027825:124031434:124031545:124033686:124033739,	124031435	124031545	124031498	124031498	Frame_Shift_Del	A	-	p.F185fs
LIHC	TCGA-G3-A3CJ-01	TBC1D31	ENST00000522276.1,ENST00000309336.3,ENST00000518684.1,ENST00000518099.1,ENST00000327098.5,ENST00000287380.1	chr8	124089350:124089497:124094941:124095057:124096401:124096509,	124094942	124095057	124094995	124094995	Frame_Shift_Del	T	-	p.L93fs
LIHC	TCGA-G3-A3CJ-01	TBC1D31	ENST00000522276.1,ENST00000309336.3,ENST00000518684.1,ENST00000518099.1,ENST00000327098.5,ENST00000287380.1	chr8	124094941:124095057:124096401:124096580:124105830:124105879,	124096402	124096580	124096538	124096538	Frame_Shift_Del	A	-	p.R159fs
LIHC	TCGA-G3-A3CJ-01	TBC1D31	ENST00000309336.3,ENST00000522420.1,ENST00000521676.1,ENST00000327098.5,ENST00000287380.1,ENST00000518577.1	chr8	124138747:124138927:124140520:124140753:124141309:124141458,124138747:124138927:124140520:124140753:124141305:124141412,	124140521	124140753	124140630	124140630	Frame_Shift_Del	T	-	p.V665fs
LIHC	TCGA-G3-A3CJ-01	TBC1D31	ENST00000378080.2,ENST00000309336.3,ENST00000524307.1	chr8	124146353:124146446:124153000:124153141:124156956:124157095,	124153001	124153141	124153066	124153066	Frame_Shift_Del	A	-	p.R855fs
LIHC	TCGA-G3-A3CJ-01	ANXA13	ENST00000262219.6	chr8	124714881:124714976:124724917:124724993:124747994:124748117,	124724918	124724993	124724944	124724944	Frame_Shift_Del	T	-	p.K63fs
LIHC	TCGA-G3-A3CJ-01	FAM91A1	ENST00000519721.1,ENST00000334705.7,ENST00000521166.1	chr8	124799903:124799990:124801852:124801985:124810329:124810478,	124801853	124801985	124801940	124801940	Frame_Shift_Del	A	-	p.K456fs
LIHC	TCGA-G3-A3CJ-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125029867:125029958:125033789:125033909:125035683:125035836,	125033790	125033909	125033884	125033884	Frame_Shift_Del	A	-	p.E703fs
LIHC	TCGA-G3-A3CJ-01	TRMT12	ENST00000522518.1	chr8	125463157:125463498:125464392:125464583:125464692:125464982,	125464393	125464583	125464494	125464494	Frame_Shift_Del	C	-	p.C442fs
LIHC	TCGA-G3-A3CJ-01	TATDN1	ENST00000520938.1,ENST00000520321.1,ENST00000523214.1,ENST00000517678.1,ENST00000519776.1,ENST00000523888.1,ENST00000519232.1,ENST00000522310.1,ENST00000521546.1,ENST00000523152.1,ENST00000522810.1,ENST00000521973.1,ENST00000605953.1,ENST00000519548.1,ENST00000276692.6	chr8	125520858:125520929:125527986:125528029:125528127:125528271,	125527987	125528029	125528025	125528025	Frame_Shift_Del	A	-	p.F117fs
LIHC	TCGA-G3-A3CJ-01	SQLE	ENST00000265896.5,ENST00000523430.1	chr8	126019663:126019729:126021212:126021326:126021413:126021585,	126021213	126021326	126021309	126021309	Frame_Shift_Del	G	-	p.V307fs
LIHC	TCGA-G3-A3CJ-01	GSDMC	ENST00000522273.1,ENST00000276708.4	chr8	130761697:130761771:130762235:130762365:130762676:130762816,	130762236	130762365	130762331	130762331	Frame_Shift_Del	G	-	p.P373fs
LIHC	TCGA-G3-A3CJ-01	FAM49B	ENST00000401979.2,ENST00000519824.2,ENST00000517801.1,ENST00000519540.1,ENST00000523288.1,ENST00000522250.1,ENST00000522746.1,ENST00000517654.1,ENST00000523509.1,ENST00000519110.1	chr8	130866511:130866589:130867856:130867993:130874474:130874572,	130867857	130867993	130867941	130867941	Frame_Shift_Del	G	-	p.P118fs
LIHC	TCGA-G3-A3CJ-01	ASAP1	ENST00000519483.1,ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131070199:131070322:131072824:131073315:131088593:131088652,	131072825	131073315	131073044	131073044	Frame_Shift_Del	G	-	p.P991fs
LIHC	TCGA-G3-A3CJ-01	ASAP1	ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131104218:131104389:131124339:131124568:131127873:131127981,	131124340	131124568	131124499	131124499	Frame_Shift_Del	G	-	p.Q748fs
LIHC	TCGA-G3-A3CJ-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133827040	133827040	Frame_Shift_Del	A	-	p.I363fs
LIHC	TCGA-G3-A3CJ-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133827044	133827044	Frame_Shift_Del	C	-	p.P366fs
LIHC	TCGA-G3-A3CJ-01	PHF20L1	ENST00000220847.7,ENST00000460236.1,ENST00000395390.2,ENST00000395386.2	chr8	133849956:133850056:133851631:133851827:133854759:133855120,	133851632	133851827	133851713	133851713	Frame_Shift_Del	A	-	p.E758fs
LIHC	TCGA-G3-A3CJ-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899542	133899542	Frame_Shift_Del	G	-	p.W642fs
LIHC	TCGA-G3-A3CJ-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133912485:133912584:133913597:133913798:133918932:133919145,	133913598	133913798	133913690	133913690	Frame_Shift_Del	T	-	p.F1176fs
LIHC	TCGA-G3-A3CJ-01	TG	ENST00000518505.1	chr8	133912485:133912584:133913666:133913798:133918932:133919145,	133913667	133913798	133913690	133913690	Frame_Shift_Del	T	-	p.F1176fs
LIHC	TCGA-G3-A3CJ-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134034235:134034395:134042065:134042268:134107287:134107452,	134042066	134042268	134042112	134042112	Frame_Shift_Del	G	-	p.A2362fs
LIHC	TCGA-G3-A3CJ-01	SLA	ENST00000395352.3,ENST00000338087.5,ENST00000427060.2,ENST00000524345.1	chr8	134052242:134052375:134057228:134057360:134060074:134060178,	134057229	134057360	134057299	134057299	Frame_Shift_Del	G	-	p.P138fs
LIHC	TCGA-G3-A3CJ-01	TG	ENST00000522996.1,ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000522809.1,ENST00000220616.4,ENST00000519178.1	chr8	134107402:134107452:134108449:134108617:134125665:134125740,	134108450	134108617	134108570	134108570	Frame_Shift_Del	G	-	p.G2509fs
LIHC	TCGA-G3-A3CJ-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134125834:134125847:134128852:134128960:134145713:134145904,134125834:134125847:134128852:134128960:134144055:134144190,	134128853	134128960	134128916	134128916	Frame_Shift_Del	A	-	p.G2606fs
LIHC	TCGA-G3-A3CJ-01	ZFAT	ENST00000520727.1,ENST00000429442.2,ENST00000377838.3,ENST00000520356.1,ENST00000523243.1,ENST00000520214.1,ENST00000522974.1,ENST00000523924.1	chr8	135615049:135615176:135620971:135621122:135622712:135622898,	135620972	135621122	135621091	135621091	Frame_Shift_Del	C	-	p.G210fs
LIHC	TCGA-G3-A3CJ-01	KHDRBS3	ENST00000355849.5,ENST00000524199.1,ENST00000522079.1	chr8	136569698:136569830:136594120:136594316:136619197:136619270,	136594121	136594316	136594256	136594256	Frame_Shift_Del	C	-	p.V249fs
LIHC	TCGA-G3-A3CJ-01	COL22A1	ENST00000435777.1,ENST00000303045.6	chr8	139737629:139737683:139749766:139749820:139763700:139763754,	139749767	139749820	139749773	139749773	Frame_Shift_Del	C	-	p.G711fs
LIHC	TCGA-G3-A3CJ-01	AGO2	ENST00000523609.1,ENST00000520412.1,ENST00000220592.5	chr8	141542631:141542714:141545566:141545668:141549418:141549548,	141545567	141545668	141545609	141545609	Frame_Shift_Del	G	-	p.P743fs
LIHC	TCGA-G3-A3CJ-01	AGO2	ENST00000523609.1,ENST00000519980.1,ENST00000220592.5	chr8	141557566:141557726:141559212:141559397:141561401:141561535,	141559213	141559397	141559309	141559309	Frame_Shift_Del	C	-	p.A498fs
LIHC	TCGA-G3-A3CJ-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000519465.1,ENST00000430260.2,ENST00000522684.1,ENST00000523539.1,ENST00000535192.1	chr8	141675015:141675096:141678367:141678523:141684396:141684503,	141678368	141678523	141678498	141678498	Frame_Shift_Del	G	-	p.P913fs
LIHC	TCGA-G3-A3CJ-01	PTK2	ENST00000538769.1,ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000518509.1,ENST00000340930.3,ENST00000395218.2,ENST00000519465.1,ENST00000522684.1,ENST00000523539.1,ENST00000519993.1,ENST00000521986.1,ENST00000535192.1	chr8	141727787:141727808:141745349:141745554:141749116:141749206,	141745350	141745554	141745361	141745361	Frame_Shift_Del	T	-	p.K673fs
LIHC	TCGA-G3-A3CJ-01	DENND3	ENST00000424248.1,ENST00000518668.1	chr8	142170730:142170886:142173431:142173528:142175284:142175388,142165992:142166069:142173431:142173528:142175284:142175388,	142173432	142173528	142173505	142173505	Frame_Shift_Del	G	-	p.G476fs
LIHC	TCGA-G3-A3CJ-01	DENND3	ENST00000424248.1,ENST00000519811.1,ENST00000262585.2,ENST00000520482.1,ENST00000518668.1	chr8	142176288:142176488:142178102:142178624:142185298:142185378,	142178103	142178624	142178333	142178333	Frame_Shift_Del	A	-	p.N662fs
LIHC	TCGA-G3-A3CJ-01	CYP11B1	ENST00000519285.1,ENST00000377675.3,ENST00000292427.4	chr8	143955884:143955902:143956372:143956570:143956649:143956728,	143956373	143956570	143956473	143956473	Frame_Shift_Del	C	-	p.G433fs
LIHC	TCGA-G3-A3CJ-01	CYP11B1	ENST00000519285.1,ENST00000377675.3,ENST00000292427.4	chr8	143955884:143955902:143956372:143956570:143956649:143956728,	143956373	143956570	143956495	143956495	Frame_Shift_Del	G	-	p.Q426fs
LIHC	TCGA-G3-A3CJ-01	TOP1MT	ENST00000329245.4,ENST00000521193.1,ENST00000519148.1,ENST00000523676.1	chr8	144399892:144400007:144400187:144400256:144403370:144403556,	144400188	144400256	144400214	144400214	Frame_Shift_Del	G	-	p.R299fs
LIHC	TCGA-G3-A3CJ-01	ZC3H3	ENST00000262577.5	chr8	144523105:144523290:144547886:144548018:144550378:144550448,	144547887	144548018	144547898	144547898	Frame_Shift_Del	G	-	p.L766fs
LIHC	TCGA-G3-A3CJ-01	MROH6	ENST00000534459.1,ENST00000524906.1,ENST00000398882.3	chr8	144649955:144650058:144650311:144650431:144650721:144650889,	144650312	144650431	144650416	144650416	Frame_Shift_Del	G	-	p.L554fs
LIHC	TCGA-G3-A3CJ-01	SCRIB	ENST00000531942.1	chr8	144888576:144888654:144889093:144889183:144890778:144890847,	144889094	144889183	144889102	144889102	Frame_Shift_Del	C	-	p.D755fs
LIHC	TCGA-G3-A3CJ-01	SCRIB	ENST00000531942.1	chr8	144888576:144888654:144889093:144889183:144890778:144890847,	144889094	144889183	144889122	144889122	Frame_Shift_Del	C	-	p.G747fs
LIHC	TCGA-G3-A3CJ-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000528131.1,ENST00000527816.1,ENST00000356346.3,ENST00000354589.3,ENST00000526416.1,ENST00000357649.2	chr8	145011146:145011239:145011332:145011410:145012318:145012408,	145011333	145011410	145011404	145011404	Frame_Shift_Del	C	-	p.E228fs
LIHC	TCGA-G3-A3CJ-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057357	145057357	Frame_Shift_Del	G	-	p.P800fs
LIHC	TCGA-G3-A3CJ-01	PARP10	ENST00000527262.1	chr8	145057099:145057233:145057479:145057979:145058175:145058272,	145057480	145057979	145057946	145057946	Frame_Shift_Del	C	-	p.G604fs
LIHC	TCGA-G3-A3CJ-01	PARP10	ENST00000313028.7,ENST00000525773.1	chr8	145057099:145057233:145057334:145057979:145058175:145058272,	145057335	145057979	145057946	145057946	Frame_Shift_Del	C	-	p.G604fs
LIHC	TCGA-G3-A3CJ-01	PARP10	ENST00000524918.1	chr8	145057479:145057979:145058202:145058272:145058377:145058599,	145058203	145058272	145058250	145058250	Frame_Shift_Del	G	-	p.P568fs
LIHC	TCGA-G3-A3CJ-01	PARP10	ENST00000313028.7,ENST00000527262.1,ENST00000525773.1	chr8	145057479:145057979:145058175:145058272:145058377:145058599,	145058176	145058272	145058250	145058250	Frame_Shift_Del	G	-	p.P568fs
LIHC	TCGA-G3-A3CJ-01	PARP10	ENST00000313028.7,ENST00000525486.1,ENST00000527262.1,ENST00000525879.1,ENST00000528625.1,ENST00000531707.1,ENST00000531537.1,ENST00000529842.1,ENST00000532311.1,ENST00000528136.1,ENST00000529311.1,ENST00000530478.1,ENST00000524918.1,ENST00000528914.1	chr8	145060081:145060143:145060222:145060401:145060525:145060590,	145060223	145060401	145060249	145060249	Frame_Shift_Del	C	-	p.G52fs
LIHC	TCGA-G3-A3CJ-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065437	145065437	Frame_Shift_Del	C	-	p.P17fs
LIHC	TCGA-G3-A3CJ-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065479	145065479	Frame_Shift_Del	C	-	p.P31fs
LIHC	TCGA-G3-A3CJ-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065613	145065613	Frame_Shift_Del	C	-	p.Y74fs
LIHC	TCGA-G3-A3CJ-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065704	145065704	Frame_Shift_Del	C	-	p.P105fs
LIHC	TCGA-G3-A3CJ-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145109714:145109816:145109931:145110092:145110690:145110842,	145109932	145110092	145109979	145109979	Frame_Shift_Del	G	-	p.H788fs
LIHC	TCGA-G3-A3CJ-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145109714:145109816:145109931:145110092:145110690:145110842,	145109932	145110092	145109998	145109998	Frame_Shift_Del	C	-	p.G781fs
LIHC	TCGA-G3-A3CJ-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145111850:145112021:145112110:145112223:145112350:145112616,	145112111	145112223	145112199	145112199	Frame_Shift_Del	G	-	p.H483fs
LIHC	TCGA-G3-A3CJ-01	SHARPIN	ENST00000398712.2,ENST00000359551.6,ENST00000534242.1,ENST00000530216.1	chr8	145154193:145154333:145154412:145154521:145154605:145154744,	145154413	145154521	145154457	145154457	Frame_Shift_Del	G	-	p.L242fs
LIHC	TCGA-G3-A3CJ-01	HSF1	ENST00000532338.1,ENST00000528838.1,ENST00000530661.1	chr8	145537196:145537302:145537508:145537574:145537647:145537717,	145537509	145537574	145537517	145537517	Frame_Shift_Del	C	-	p.S419fs
LIHC	TCGA-G3-A3CJ-01	SLC52A2	ENST00000532887.1,ENST00000402965.1,ENST00000527078.1,ENST00000530047.1,ENST00000329994.2	chr8	145582847:145583083:145583282:145584153:145584249:145584343,	145583283	145584153	145583656	145583656	Frame_Shift_Del	C	-	p.G168fs
LIHC	TCGA-G3-A3CJ-01	CPSF1	ENST00000349769.3	chr8	145619602:145619770:145619858:145620011:145620096:145620238,	145619859	145620011	145619916	145619916	Frame_Shift_Del	C	-	p.G1170fs
LIHC	TCGA-G3-A3CJ-01	CPSF1	ENST00000349769.3	chr8	145622957:145623094:145623168:145623347:145623691:145623833,	145623169	145623347	145623307	145623307	Frame_Shift_Del	G	-	p.P645fs
LIHC	TCGA-G3-A3CJ-01	CPSF1	ENST00000349769.3,ENST00000531042.1,ENST00000531683.1	chr8	145626332:145626469:145626604:145626685:145626823:145626957,	145626605	145626685	145626660	145626660	Frame_Shift_Del	C	-	p.G111fs
LIHC	TCGA-G3-A3CJ-01	SLC39A4	ENST00000301305.3,ENST00000276833.5	chr8	145639133:145639265:145639341:145639479:145639645:145639818,	145639342	145639479	145639354	145639354	Frame_Shift_Del	G	-	p.P400fs
LIHC	TCGA-G3-A3CJ-01	TONSL	ENST00000409379.3,ENST00000497613.1	chr8	145660856:145660933:145661040:145661801:145661940:145662064,	145661041	145661801	145661089	145661089	Frame_Shift_Del	G	-	p.P909fs
LIHC	TCGA-G3-A3CJ-01	TONSL	ENST00000409379.3	chr8	145667623:145667795:145668059:145668189:145668520:145668704,	145668060	145668189	145668067	145668067	Frame_Shift_Del	G	-	p.L191fs
LIHC	TCGA-G3-A3CJ-01	RECQL4	ENST00000532237.1,ENST00000532269.1,ENST00000428558.2,ENST00000532846.2,ENST00000534626.2	chr8	145738954:145739096:145739311:145739491:145739572:145739746,	145739312	145739491	145739482	145739482	Frame_Shift_Del	C	-	p.E630fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145773714	145773714	Frame_Shift_Del	G	-	p.P252fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP39	ENST00000276826.5,ENST00000540274.1	chr8	145780943:145781027:145806229:145806661:145830919:145831080,	145806230	145806661	145806436	145806436	Frame_Shift_Del	C	-	p.P102fs
LIHC	TCGA-G3-A3CJ-01	CBWD1	ENST00000382393.1,ENST00000382447.4,ENST00000377447.3,ENST00000377400.4	chr9	173269:173366:175697:175784:178815:179018,	175698	175784	175731	175731	Frame_Shift_Del	T	-	p.R70fs
LIHC	TCGA-G3-A3CJ-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	710860	710860	Frame_Shift_Del	T	-	p.F32fs
LIHC	TCGA-G3-A3CJ-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	711471	711471	Frame_Shift_Del	G	-	p.M235fs
LIHC	TCGA-G3-A3CJ-01	SMARCA2	ENST00000302401.3,ENST00000349721.2,ENST00000382203.1,ENST00000324954.5,ENST00000382186.1,ENST00000357248.2,ENST00000382183.1,ENST00000382185.1,ENST00000382194.1	chr9	2186095:2186228:2191265:2191408:2192703:2192752,	2191266	2191408	2191354	2191354	Frame_Shift_Del	A	-	p.G1561fs
LIHC	TCGA-G3-A3CJ-01	SMARCA2	ENST00000302401.3,ENST00000349721.2,ENST00000382203.1,ENST00000324954.5,ENST00000382186.1,ENST00000357248.2,ENST00000382183.1,ENST00000382185.1,ENST00000382194.1	chr9	2186095:2186228:2191265:2191408:2192703:2192752,	2191266	2191408	2191378	2191378	Frame_Shift_Del	T	-	p.D1569fs
LIHC	TCGA-G3-A3CJ-01	RFX3	ENST00000358730.2,ENST00000382004.3,ENST00000302303.1	chr9	3275499:3275612:3277339:3277461:3288130:3288250,	3277340	3277461	3277379	3277379	Frame_Shift_Del	T	-	p.T312fs
LIHC	TCGA-G3-A3CJ-01	GLIS3	ENST00000491889.1	chr9	4125733:4125941:4286037:4286523:4299420:4299594,4125819:4125941:4286037:4286523:4298383:4298496,4118744:4118881:4286037:4286523:4299420:4299594,	4286038	4286523	4286279	4286279	Frame_Shift_Del	G	-	p.P49fs
LIHC	TCGA-G3-A3CJ-01	SPATA6L	ENST00000461761.1,ENST00000454239.2,ENST00000381890.5,ENST00000475086.1	chr9	4622407:4622510:4625326:4625566:4629090:4629168,	4625327	4625566	4625510	4625510	Frame_Shift_Del	G	-	p.P162fs
LIHC	TCGA-G3-A3CJ-01	PDCD1LG2	ENST00000397747.3	chr9	5549334:5549604:5557617:5557752:5563161:5563211,	5557618	5557752	5557660	5557660	Frame_Shift_Del	T	-	p.I225fs
LIHC	TCGA-G3-A3CJ-01	ERMP1	ENST00000339450.5,ENST00000489219.1,ENST00000214893.5,ENST00000543230.1,ENST00000462592.1	chr9	5801271:5801328:5805026:5805217:5805610:5805785,	5805027	5805217	5805201	5805201	Frame_Shift_Del	A	-	p.F580fs
LIHC	TCGA-G3-A3CJ-01	ERMP1	ENST00000487088.1,ENST00000381506.3	chr9	5801271:5801328:5805610:5805785:5810010:5810231,	5805611	5805785	5805735	5805735	Frame_Shift_Del	A	-	p.F533fs
LIHC	TCGA-G3-A3CJ-01	ERMP1	ENST00000487088.1,ENST00000339450.5,ENST00000489219.1,ENST00000214893.5,ENST00000462592.1,ENST00000381506.3	chr9	5810010:5810231:5811110:5811323:5812124:5812217,	5811111	5811323	5811149	5811149	Frame_Shift_Del	A	-	p.L430fs
LIHC	TCGA-G3-A3CJ-01	MLANA	ENST00000381477.3,ENST00000381471.1,ENST00000381476.1	chr9	5897563:5897653:5906884:5906998:5908639:5908943,	5906885	5906998	5906955	5906955	Frame_Shift_Del	G	-	p.R82fs
LIHC	TCGA-G3-A3CJ-01	IL33	ENST00000456383.2	chr9	6215808:6215852:6241683:6241785:6250473:6250599,	6241684	6241785	6241704	6241704	Frame_Shift_Del	A	-	p.K4fs
LIHC	TCGA-G3-A3CJ-01	GLDC	ENST00000321612.6	chr9	6536063:6536236:6540050:6540146:6550802:6550914,	6540051	6540146	6540101	6540101	Frame_Shift_Del	T	-	p.K872fs
LIHC	TCGA-G3-A3CJ-01	KDM4C	ENST00000535193.1,ENST00000489243.1,ENST00000438023.1,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3,ENST00000401787.3	chr9	6792971:6793132:6805598:6805774:6814630:6814745,	6805599	6805774	6805725	6805725	Frame_Shift_Del	A	-	p.K92fs
LIHC	TCGA-G3-A3CJ-01	KDM4C	ENST00000535193.1,ENST00000536108.1,ENST00000428870.2,ENST00000438023.1,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3	chr9	6984280:6984404:6986343:6986666:6990415:6990524,	6986344	6986666	6986447	6986447	Frame_Shift_Del	T	-	p.D486fs
LIHC	TCGA-G3-A3CJ-01	KDM4C	ENST00000535193.1,ENST00000536108.1,ENST00000428870.2,ENST00000438023.1,ENST00000381309.3,ENST00000543771.1,ENST00000381306.3	chr9	6984280:6984404:6986343:6986666:6990415:6990524,	6986344	6986666	6986621	6986621	Frame_Shift_Del	C	-	p.I544fs
LIHC	TCGA-G3-A3CJ-01	KDM4C	ENST00000490806.1,ENST00000428870.2,ENST00000466673.1,ENST00000442236.2,ENST00000420847.1,ENST00000381309.3,ENST00000381306.3	chr9	7128065:7128236:7165237:7165357:7169797:7169829,	7165238	7165357	7165261	7165261	Frame_Shift_Del	C	-	p.G935fs
LIHC	TCGA-G3-A3CJ-01	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381022.2	chr9	13110634:13110739:13112022:13112145:13113009:13113053,	13112023	13112145	13112029	13112029	Frame_Shift_Del	T	-	p.K1906fs
LIHC	TCGA-G3-A3CJ-01	NFIB	ENST00000397581.2,ENST00000380934.4,ENST00000397579.2,ENST00000380959.3,ENST00000543693.1,ENST00000380924.1,ENST00000380953.1,ENST00000397575.3	chr9	14146687:14146806:14150143:14150264:14155823:14155892,	14150144	14150264	14150181	14150181	Frame_Shift_Del	C	-	p.V257fs
LIHC	TCGA-G3-A3CJ-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000427623.1,ENST00000486223.1,ENST00000380894.1	chr9	14759769:14759899:14769721:14769866:14770602:14770804,	14769722	14769866	14769748	14769748	Frame_Shift_Del	G	-	p.P1727fs
LIHC	TCGA-G3-A3CJ-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000380875.3	chr9	14801649:14801872:14804953:14805150:14806658:14806844,	14804954	14805150	14805119	14805119	Frame_Shift_Del	A	-	p.F1103fs
LIHC	TCGA-G3-A3CJ-01	SNAPC3	ENST00000490969.1,ENST00000467062.1,ENST00000380821.3	chr9	15444599:15444704:15447092:15447242:15451317:15451400,	15447093	15447242	15447139	15447139	Frame_Shift_Del	A	-	p.Q210fs
LIHC	TCGA-G3-A3CJ-01	SNAPC3	ENST00000490969.1,ENST00000467062.1,ENST00000380821.3	chr9	15451317:15451400:15453038:15453203:15457957:15458065,	15453039	15453203	15453141	15453141	Frame_Shift_Del	T	-	p.G306fs
LIHC	TCGA-G3-A3CJ-01	SNAPC3	ENST00000490969.1,ENST00000467062.1	chr9	15457957:15458065:15459716:15460311:15461628:15461803,	15459717	15460311	15459763	15459763	Frame_Shift_Del	T	-	p.F379fs
LIHC	TCGA-G3-A3CJ-01	CCDC171	ENST00000535968.1,ENST00000380701.3,ENST00000297641.3	chr9	15563975:15564127:15571621:15571757:15578846:15579021,	15571622	15571757	15571749	15571749	Frame_Shift_Del	A	-	p.N57fs
LIHC	TCGA-G3-A3CJ-01	CCDC171	ENST00000380701.3,ENST00000297641.3	chr9	15666160:15666321:15678755:15678894:15695232:15695335,	15678756	15678894	15678761	15678761	Frame_Shift_Del	A	-	p.E361fs
LIHC	TCGA-G3-A3CJ-01	CCDC171	ENST00000498725.1	chr9	15848890:15848945:15874529:15874661:15920267:15920332,15850223:15850309:15874529:15874661:15920267:15920332,	15874530	15874661	15874614	15874614	Frame_Shift_Del	T	-	p.F1185fs
LIHC	TCGA-G3-A3CJ-01	CCDC171	ENST00000498725.1	chr9	15848890:15848945:15874529:15874661:15920267:15920332,15850223:15850309:15874529:15874661:15920267:15920332,	15874530	15874661	15874625	15874625	Frame_Shift_Del	G	-	p.E1188fs
LIHC	TCGA-G3-A3CJ-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436655	16436655	Frame_Shift_Del	C	-	p.A513fs
LIHC	TCGA-G3-A3CJ-01	ADAMTSL1	ENST00000380566.4,ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18574027:18574264:18622240:18622367:18635940:18636015,	18622241	18622367	18622364	18622364	Frame_Shift_Del	A	-	p.K200fs
LIHC	TCGA-G3-A3CJ-01	ADAMTSL1	ENST00000542621.1	chr9	18887828:18888041:18889565:18889746:18905779:18905889,	18889566	18889746	18889620	18889620	Frame_Shift_Del	G	-	p.R1506fs
LIHC	TCGA-G3-A3CJ-01	HAUS6	ENST00000380502.3,ENST00000380496.1	chr9	19080476:19080670:19082870:19083041:19086731:19086780,	19082871	19083041	19082998	19082998	Frame_Shift_Del	A	-	p.L248fs
LIHC	TCGA-G3-A3CJ-01	DENND4C	ENST00000361024.2,ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19369834:19369985:19371753:19371818:19372034:19372592,	19371754	19371818	19371779	19371779	Frame_Shift_Del	T	-	p.L1089fs
LIHC	TCGA-G3-A3CJ-01	FOCAD	ENST00000338382.6,ENST00000380249.1,ENST00000605086.1	chr9	20866927:20867011:20874679:20874806:20881869:20882055,	20874680	20874806	20874802	20874802	Frame_Shift_Del	A	-	p.L771fs
LIHC	TCGA-G3-A3CJ-01	ELAVL2	ENST00000223951.6	chr9	23691808:23692882:23701376:23701602:23704915:23705069,	23701377	23701602	23701462	23701462	Frame_Shift_Del	T	-	p.T210fs
LIHC	TCGA-G3-A3CJ-01	PLAA	ENST00000397292.3	chr9	26905880:26906074:26907831:26907996:26910335:26910437,	26907832	26907996	26907881	26907881	Frame_Shift_Del	G	-	p.P591fs
LIHC	TCGA-G3-A3CJ-01	PLAA	ENST00000397292.3	chr9	26905880:26906074:26907831:26907996:26910335:26910437,	26907832	26907996	26907884	26907884	Frame_Shift_Del	T	-	p.K590fs
LIHC	TCGA-G3-A3CJ-01	PLAA	ENST00000520641.1	chr9	26913876:26913945:26917094:26917163:26919307:26919372,26916453:26916703:26917094:26917163:26919307:26919372,	26917095	26917163	26917099	26917099	Frame_Shift_Del	A	-	p.F494fs
LIHC	TCGA-G3-A3CJ-01	IFT74	ENST00000429045.2,ENST00000380062.5,ENST00000518614.1	chr9	26956476:26956514:26961946:26962085:26978125:26978261,	26961947	26962085	26961998	26961998	Frame_Shift_Del	C	-	p.R11fs
LIHC	TCGA-G3-A3CJ-01	IFT74	ENST00000443698.1,ENST00000429045.2,ENST00000433700.1,ENST00000380062.5	chr9	26990131:26990193:27009017:27009156:27011903:27011966,	27009018	27009156	27009023	27009023	Frame_Shift_Del	A	-	p.E198fs
LIHC	TCGA-G3-A3CJ-01	IFT74	ENST00000443698.1,ENST00000429045.2,ENST00000433700.1,ENST00000380062.5	chr9	26990131:26990193:27009017:27009156:27011903:27011966,	27009018	27009156	27009088	27009088	Frame_Shift_Del	A	-	p.K220fs
LIHC	TCGA-G3-A3CJ-01	TEK	ENST00000406359.4,ENST00000519080.1,ENST00000519097.1,ENST00000380036.4	chr9	27185482:27185627:27190526:27190688:27192486:27192621,	27190527	27190688	27190548	27190548	Frame_Shift_Del	C	-	p.A450fs
LIHC	TCGA-G3-A3CJ-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32457055:32457416:32459368:32459512:32466287:32466439,	32459369	32459512	32459462	32459462	Frame_Shift_Del	T	-	p.K751fs
LIHC	TCGA-G3-A3CJ-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32459368:32459512:32466287:32466439:32467759:32467930,	32466288	32466439	32466328	32466328	Frame_Shift_Del	A	-	p.L721fs
LIHC	TCGA-G3-A3CJ-01	DDX58	ENST00000379882.1,ENST00000545044.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32472972:32473063:32476980:32477129:32480216:32480352,	32476981	32477129	32477005	32477005	Frame_Shift_Del	A	-	p.F588fs
LIHC	TCGA-G3-A3CJ-01	APTX	ENST00000468275.1,ENST00000494649.1,ENST00000467331.1,ENST00000397172.3,ENST00000463596.1,ENST00000379825.2,ENST00000379817.2,ENST00000465003.1,ENST00000379813.3,ENST00000495360.1,ENST00000474658.2,ENST00000479656.1,ENST00000485479.1,ENST00000476858.1,ENST00000309615.3,ENST00000379819.1	chr9	32974455:32974559:32984628:32984855:32985968:32986028,	32984629	32984855	32984701	32984701	Frame_Shift_Del	T	-	p.K233fs
LIHC	TCGA-G3-A3CJ-01	DNAJA1	ENST00000544625.1,ENST00000495015.1,ENST00000330899.4	chr9	33036571:33036687:33037012:33037113:33038682:33038724,	33037013	33037113	33037065	33037065	Frame_Shift_Del	A	-	p.P309fs
LIHC	TCGA-G3-A3CJ-01	AQP3	ENST00000494313.1,ENST00000297991.4	chr9	33441772:33442209:33442298:33442516:33442849:33442968,	33442299	33442516	33442401	33442401	Frame_Shift_Del	C	-	p.G203fs
LIHC	TCGA-G3-A3CJ-01	NOL6	ENST00000297990.4,ENST00000379471.2,ENST00000353159.2	chr9	33469204:33469339:33469496:33469665:33470009:33470189,	33469497	33469665	33469578	33469578	Frame_Shift_Del	G	-	p.Q216fs
LIHC	TCGA-G3-A3CJ-01	ANKRD18B	ENST00000474881.2,ENST00000484634.1	chr9	33534367:33534505:33536875:33536943:33539446:33539500,	33536876	33536943	33536901	33536901	Frame_Shift_Del	A	-	p.K256fs
LIHC	TCGA-G3-A3CJ-01	UBAP2	ENST00000418786.2,ENST00000488443.1	chr9	33932559:33932626:33933487:33933626:33935836:33935876,33927849:33927990:33933487:33933626:33935836:33935876,	33933488	33933626	33933574	33933574	Frame_Shift_Del	G	-	p.P674fs
LIHC	TCGA-G3-A3CJ-01	UBAP2	ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33944512:33944637:33948371:33948585:33953282:33953472,	33948372	33948585	33948540	33948540	Frame_Shift_Del	T	-	p.M368fs
LIHC	TCGA-G3-A3CJ-01	CNTFR	ENST00000351266.4,ENST00000417345.1,ENST00000378980.3	chr9	34557523:34557690:34557864:34557982:34564596:34564830,	34557865	34557982	34557936	34557936	Frame_Shift_Del	G	-	p.P122fs
LIHC	TCGA-G3-A3CJ-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35092453	35092453	Frame_Shift_Del	A	-	p.F477fs
LIHC	TCGA-G3-A3CJ-01	UNC13B	ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35396837:35396934:35397163:35397307:35397631:35397709,	35397164	35397307	35397299	35397299	Frame_Shift_Del	T	-	p.F1141fs
LIHC	TCGA-G3-A3CJ-01	UNC13B	ENST00000481299.1,ENST00000378495.3,ENST00000396787.1,ENST00000378496.4	chr9	35397631:35397709:35398207:35398285:35398550:35398639,	35398208	35398285	35398282	35398282	Frame_Shift_Del	G	-	p.K1194fs
LIHC	TCGA-G3-A3CJ-01	TLN1	ENST00000314888.9	chr9	35705958:35706108:35706192:35706363:35706446:35706520,	35706193	35706363	35706237	35706237	Frame_Shift_Del	G	-	p.L1773fs
LIHC	TCGA-G3-A3CJ-01	TLN1	ENST00000314888.9	chr9	35705958:35706108:35706192:35706363:35706446:35706520,	35706193	35706363	35706255	35706255	Frame_Shift_Del	T	-	p.T1767fs
LIHC	TCGA-G3-A3CJ-01	TLN1	ENST00000314888.9,ENST00000540444.1	chr9	35717615:35717783:35718808:35718907:35719070:35719279,	35718809	35718907	35718835	35718835	Frame_Shift_Del	C	-	p.E657fs
LIHC	TCGA-G3-A3CJ-01	NPR2	ENST00000342694.2,ENST00000464810.1	chr9	35802499:35802604:35802728:35802800:35805507:35805667,	35802729	35802800	35802758	35802758	Frame_Shift_Del	G	-	p.L615fs
LIHC	TCGA-G3-A3CJ-01	CLTA	ENST00000345519.5,ENST00000433436.2,ENST00000396603.2,ENST00000538225.1,ENST00000464497.1,ENST00000470744.1,ENST00000242285.6	chr9	36197547:36197585:36198975:36199093:36204064:36204128,	36198976	36199093	36199010	36199010	Frame_Shift_Del	T	-	p.I97fs
LIHC	TCGA-G3-A3CJ-01	CLTA	ENST00000345519.5,ENST00000433436.2,ENST00000396603.2,ENST00000538225.1,ENST00000464497.1,ENST00000470744.1,ENST00000242285.6	chr9	36197547:36197585:36198975:36199093:36204064:36204128,	36198976	36199093	36199027	36199027	Frame_Shift_Del	T	-	p.L103fs
LIHC	TCGA-G3-A3CJ-01	RNF38	ENST00000259605.6,ENST00000350199.4,ENST00000357058.3,ENST00000353739.4,ENST00000377877.4,ENST00000377885.2	chr9	36353166:36353328:36356299:36356470:36357771:36357939,	36356300	36356470	36356325	36356325	Frame_Shift_Del	G	-	p.P212fs
LIHC	TCGA-G3-A3CJ-01	MELK	ENST00000536860.1,ENST00000545008.1,ENST00000538311.1,ENST00000543751.1,ENST00000298048.2,ENST00000536987.1,ENST00000536329.1,ENST00000541717.1	chr9	36669306:36669403:36670994:36671163:36674830:36674934,	36670995	36671163	36671122	36671122	Frame_Shift_Del	A	-	p.K513fs
LIHC	TCGA-G3-A3CJ-01	ZCCHC7	ENST00000461038.1,ENST00000336755.5,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2	chr9	37302184:37302228:37304184:37304310:37305540:37305711,	37304185	37304310	37304289	37304289	Frame_Shift_Del	A	-	p.S253fs
LIHC	TCGA-G3-A3CJ-01	CNTNAP3	ENST00000297668.6,ENST00000358144.2	chr9	39099907:39100147:39102493:39102712:39103740:39103911,	39102494	39102712	39102541	39102541	Frame_Shift_Del	G	-	p.P903fs
LIHC	TCGA-G3-A3CJ-01	CNTNAP3	ENST00000377659.1,ENST00000323947.7,ENST00000443583.2,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39165929:39166073:39171365:39171627:39175945:39176084,	39171366	39171627	39171577	39171577	Frame_Shift_Del	A	-	p.F374fs
LIHC	TCGA-G3-A3CJ-01	CNTNAP3B	ENST00000276974.6,ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43800863:43801011:43815784:43815988:43816636:43816821,	43815785	43815988	43815911	43815911	Frame_Shift_Del	T	-	p.L222fs
LIHC	TCGA-G3-A3CJ-01	CNTNAP3B	ENST00000276974.6,ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43800863:43801011:43815784:43815988:43816636:43816821,	43815785	43815988	43815914	43815914	Frame_Shift_Del	A	-	p.H223fs
LIHC	TCGA-G3-A3CJ-01	CNTNAP3B	ENST00000479351.1	chr9	43828077:43828221:43853496:43853616:43861002:43861206,	43853497	43853616	43853521	43853521	Frame_Shift_Del	C	-	p.A594fs
LIHC	TCGA-G3-A3CJ-01	CBWD3	ENST00000377344.2,ENST00000360171.6,ENST00000377342.5	chr9	70912667:70912733:70913879:70914009:70914396:70914560,	70913880	70914009	70913990	70913990	Frame_Shift_Del	A	-	p.T354fs
LIHC	TCGA-G3-A3CJ-01	PGM5	ENST00000472639.1,ENST00000396396.1	chr9	71094333:71094469:71098780:71098964:71114142:71114201,	71098781	71098964	71098883	71098883	Frame_Shift_Del	G	-	p.V466fs
LIHC	TCGA-G3-A3CJ-01	PGM5	ENST00000472639.1,ENST00000396396.1	chr9	71094333:71094469:71098780:71098964:71114142:71114201,	71098781	71098964	71098919	71098919	Frame_Shift_Del	T	-	p.S478fs
LIHC	TCGA-G3-A3CJ-01	FAM189A2	ENST00000303068.7,ENST00000257515.8,ENST00000455972.1	chr9	72000735:72000863:72003073:72003366:72006516:72006629,	72003074	72003366	72003077	72003077	Frame_Shift_Del	C	-	p.A287fs
LIHC	TCGA-G3-A3CJ-01	SMC5	ENST00000361138.5	chr9	72897337:72897499:72901115:72901187:72912881:72913137,	72901116	72901187	72901141	72901141	Frame_Shift_Del	A	-	p.Q336fs
LIHC	TCGA-G3-A3CJ-01	SMC5	ENST00000361138.5	chr9	72914961:72915116:72920162:72920276:72929657:72929752,	72920163	72920276	72920271	72920271	Frame_Shift_Del	A	-	p.K525fs
LIHC	TCGA-G3-A3CJ-01	SMC5	ENST00000471372.1,ENST00000361138.5	chr9	72961981:72962077:72962528:72962633:72962834:72962954,	72962529	72962633	72962546	72962546	Frame_Shift_Del	A	-	p.T894fs
LIHC	TCGA-G3-A3CJ-01	TRPM3	ENST00000377105.1,ENST00000357533.2,ENST00000408909.2,ENST00000396280.5	chr9	73240106:73240247:73240397:73240433:73250126:73250177,	73240398	73240433	73240401	73240401	Frame_Shift_Del	A	-	p.F402fs
LIHC	TCGA-G3-A3CJ-01	ABHD17B	ENST00000333421.6	chr9	74484998:74485178:74489529:74489999:74525549:74525658,	74489530	74489999	74489701	74489701	Frame_Shift_Del	C	-	p.G99fs
LIHC	TCGA-G3-A3CJ-01	ALDH1A1	ENST00000446946.1	chr9	75555063:75555168:75567850:75567930:75695282:75695311,75555063:75555168:75567850:75567930:75653456:75653638,	75567851	75567930	75567870	75567870	Frame_Shift_Del	A	-	p.L16fs
LIHC	TCGA-G3-A3CJ-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000376871.3,ENST00000449912.2,ENST00000451710.3,ENST00000376872.3	chr9	77347600:77347652:77353322:77353528:77354282:77354365,	77353323	77353528	77353349	77353349	Frame_Shift_Del	C	-	p.G1921fs
LIHC	TCGA-G3-A3CJ-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377271	77377271	Frame_Shift_Del	G	-	p.P1439fs
LIHC	TCGA-G3-A3CJ-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77416813:77417091:77418709:77418802:77422949:77423090,	77418710	77418802	77418716	77418716	Frame_Shift_Del	T	-	p.K575fs
LIHC	TCGA-G3-A3CJ-01	NMRK1	ENST00000494066.1	chr9	77681672:77681756:77683911:77684958:77692074:77692123,	77683912	77684958	77683986	77683986	Frame_Shift_Del	C	-	p.G145fs
LIHC	TCGA-G3-A3CJ-01	NMRK1	ENST00000494066.1	chr9	77681672:77681756:77683911:77684958:77692074:77692123,	77683912	77684958	77684011	77684011	Frame_Shift_Del	C	-	p.V137fs
LIHC	TCGA-G3-A3CJ-01	NMRK1	ENST00000376808.4	chr9	77684657:77684729:77684810:77684958:77692074:77692119,77683911:77684018:77684810:77684958:77692074:77692123,	77684811	77684958	77684819	77684819	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-G3-A3CJ-01	NMRK1	ENST00000494066.1	chr9	77681672:77681756:77683911:77684958:77692074:77692123,	77683912	77684958	77684819	77684819	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-G3-A3CJ-01	OSTF1	ENST00000346234.6	chr9	77746685:77746739:77748209:77748317:77749261:77749311,	77748210	77748317	77748257	77748257	Frame_Shift_Del	A	-	p.N100fs
LIHC	TCGA-G3-A3CJ-01	VPS13A	ENST00000376634.4,ENST00000376636.3,ENST00000423463.2,ENST00000360280.3,ENST00000357409.5	chr9	79910457:79910762:79917830:79917978:79922860:79923014,	79917831	79917978	79917926	79917926	Frame_Shift_Del	G	-	p.W1303fs
LIHC	TCGA-G3-A3CJ-01	PSAT1	ENST00000376588.3,ENST00000347159.2	chr9	80916869:80916939:80919650:80919856:80921229:80921402,	80919651	80919856	80919844	80919844	Frame_Shift_Del	G	-	p.G129fs
LIHC	TCGA-G3-A3CJ-01	PSAT1	ENST00000376588.3,ENST00000347159.2	chr9	80919650:80919856:80921229:80921402:80923329:80923499,	80921230	80921402	80921395	80921395	Frame_Shift_Del	T	-	p.V188fs
LIHC	TCGA-G3-A3CJ-01	TLE4	ENST00000376537.4,ENST00000376520.4	chr9	82320803:82320857:82321661:82321814:82323032:82323077,82320803:82320857:82321661:82321814:82322037:82322133,	82321662	82321814	82321696	82321696	Frame_Shift_Del	C	-	p.S273fs
LIHC	TCGA-G3-A3CJ-01	GKAP1	ENST00000376371.2	chr9	86368190:86368274:86383732:86383885:86395296:86395319,	86383733	86383885	86383796	86383796	Frame_Shift_Del	T	-	p.K225fs
LIHC	TCGA-G3-A3CJ-01	KIF27	ENST00000297814.2,ENST00000413982.1,ENST00000334204.2	chr9	86514575:86514719:86517974:86518933:86523366:86523567,	86517975	86518933	86518155	86518155	Frame_Shift_Del	T	-	p.K426fs
LIHC	TCGA-G3-A3CJ-01	KIF27	ENST00000297814.2,ENST00000413982.1,ENST00000334204.2	chr9	86514575:86514719:86517974:86518933:86523366:86523567,	86517975	86518933	86518866	86518866	Frame_Shift_Del	C	-	p.G189fs
LIHC	TCGA-G3-A3CJ-01	NAA35	ENST00000361671.5	chr9	88593181:88593296:88611313:88611492:88618499:88618559,	88611314	88611492	88611340	88611340	Frame_Shift_Del	C	-	p.P302fs
LIHC	TCGA-G3-A3CJ-01	CTSL	ENST00000342020.5,ENST00000375894.5,ENST00000343150.5,ENST00000482054.1,ENST00000340342.6	chr9	90342948:90343064:90343164:90343311:90343499:90343724,	90343165	90343311	90343213	90343213	Frame_Shift_Del	C	-	p.P100fs
LIHC	TCGA-G3-A3CJ-01	SHC3	ENST00000375830.1,ENST00000375835.4	chr9	91656940:91657099:91660660:91660748:91661758:91661909,	91660661	91660748	91660717	91660717	Frame_Shift_Del	C	-	p.G382fs
LIHC	TCGA-G3-A3CJ-01	SECISBP2	ENST00000534113.2,ENST00000339901.4,ENST00000375807.3	chr9	91965546:91965767:91972325:91972480:91972913:91973044,	91972326	91972480	91972430	91972430	Frame_Shift_Del	A	-	p.K740fs
LIHC	TCGA-G3-A3CJ-01	SECISBP2	ENST00000498819.1	chr9	91965546:91965767:91972199:91972480:91972913:91973044,	91972200	91972480	91972430	91972430	Frame_Shift_Del	A	-	p.K740fs
LIHC	TCGA-G3-A3CJ-01	SECISBP2	ENST00000534113.2,ENST00000339901.4,ENST00000375807.3	chr9	91972325:91972480:91972913:91973106:91973635:91974078,	91972914	91973106	91973069	91973069	Frame_Shift_Del	C	-	p.G808fs
LIHC	TCGA-G3-A3CJ-01	SEMA4D	ENST00000420987.1,ENST00000450295.1,ENST00000455551.2,ENST00000356444.2,ENST00000429836.1,ENST00000438547.2,ENST00000339861.4,ENST00000420681.2,ENST00000422704.2,ENST00000343780.4,ENST00000537934.1	chr9	92014190:92014253:92017785:92017931:92020265:92020614,	92017786	92017931	92017839	92017839	Frame_Shift_Del	G	-	p.R67fs
LIHC	TCGA-G3-A3CJ-01	ROR2	ENST00000550066.1,ENST00000375715.1,ENST00000375708.3	chr9	94488822:94489025:94493191:94493437:94495403:94495718,	94493192	94493437	94493339	94493339	Frame_Shift_Del	G	-	p.H346fs
LIHC	TCGA-G3-A3CJ-01	ASPN	ENST00000375544.3	chr9	95222755:95222849:95227200:95227311:95228639:95228853,	95227201	95227311	95227255	95227255	Frame_Shift_Del	C	-	p.V220fs
LIHC	TCGA-G3-A3CJ-01	ECM2	ENST00000375540.1,ENST00000344604.5,ENST00000395534.2	chr9	95279969:95280157:95284856:95285175:95298214:95298254,	95284857	95285175	95284966	95284966	Frame_Shift_Del	A	-	p.F61fs
LIHC	TCGA-G3-A3CJ-01	IPPK	ENST00000287996.3	chr9	95397439:95397590:95400282:95400562:95402991:95403064,	95400283	95400562	95400521	95400521	Frame_Shift_Del	G	-	p.P226fs
LIHC	TCGA-G3-A3CJ-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96019229:96019421:96021212:96021896:96024095:96024389,	96021213	96021896	96021699	96021699	Frame_Shift_Del	C	-	p.P958fs
LIHC	TCGA-G3-A3CJ-01	WNK2	ENST00000395475.2,ENST00000356055.3,ENST00000448251.1,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96061396:96061543:96062332:96062431:96069058:96069103,	96062333	96062431	96062342	96062342	Frame_Shift_Del	T	-	p.V2079fs
LIHC	TCGA-G3-A3CJ-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000446420.2,ENST00000277165.6	chr9	96289436:96289524:96291634:96291862:96294436:96294611,	96291635	96291862	96291773	96291773	Frame_Shift_Del	C	-	p.P550fs
LIHC	TCGA-G3-A3CJ-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000427765.1,ENST00000277165.6	chr9	96312858:96312973:96318663:96318873:96320108:96320292,	96318664	96318873	96318792	96318792	Frame_Shift_Del	T	-	p.Y801fs
LIHC	TCGA-G3-A3CJ-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860715	96860715	Frame_Shift_Del	A	-	p.K569fs
LIHC	TCGA-G3-A3CJ-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96859602:96860861:96863847:96864033:96866556:96866667,	96863848	96864033	96863965	96863965	Frame_Shift_Del	A	-	p.K657fs
LIHC	TCGA-G3-A3CJ-01	FBP1	ENST00000415431.1,ENST00000375326.4	chr9	97367738:97367858:97369096:97369234:97372202:97372343,	97369097	97369234	97369188	97369188	Frame_Shift_Del	T	-	p.K206fs
LIHC	TCGA-G3-A3CJ-01	ERCC6L2	ENST00000407474.3,ENST00000320486.5	chr9	98740342:98740497:98766801:98766983:98774506:98775485,	98766802	98766983	98766812	98766812	Frame_Shift_Del	A	-	p.E149fs
LIHC	TCGA-G3-A3CJ-01	SLC35D2	ENST00000253270.7	chr9	99086372:99086451:99098998:99099066:99106185:99106275,	99098999	99099066	99099002	99099002	Frame_Shift_Del	A	-	p.L250fs
LIHC	TCGA-G3-A3CJ-01	CCDC180	ENST00000529487.1,ENST00000375202.2,ENST00000357054.1,ENST00000395220.1	chr9	100132922:100133060:100133876:100133988:100136824:100136930,	100133877	100133988	100133902	100133902	Frame_Shift_Del	T	-	p.V1549fs
LIHC	TCGA-G3-A3CJ-01	TBC1D2	ENST00000375064.1,ENST00000342112.5,ENST00000375066.5	chr9	100983375:100983510:100991233:100991430:100995697:100995831,	100991234	100991430	100991329	100991329	Frame_Shift_Del	A	-	p.S295fs
LIHC	TCGA-G3-A3CJ-01	TBC1D2	ENST00000375064.1,ENST00000375066.5	chr9	100995697:100995831:101006275:101006411:101017454:101017862,100995697:100995831:101006275:101006411:101014066:101014208,	101006276	101006411	101006367	101006367	Frame_Shift_Del	T	-	p.T186fs
LIHC	TCGA-G3-A3CJ-01	GALNT12	ENST00000375011.3	chr9	101597530:101597648:101599253:101599430:101602283:101602415,	101599254	101599430	101599392	101599392	Frame_Shift_Del	A	-	p.K392fs
LIHC	TCGA-G3-A3CJ-01	COL15A1	ENST00000375001.3	chr9	101829163:101829349:101830836:101830952:101831954:101833069,	101830837	101830952	101830868	101830868	Frame_Shift_Del	T	-	p.I1290fs
LIHC	TCGA-G3-A3CJ-01	INVS	ENST00000541287.1,ENST00000262456.2,ENST00000262457.2	chr9	102991941:102992109:103002341:103002522:103004851:103004961,	103002342	103002522	103002420	103002420	Frame_Shift_Del	G	-	p.G232fs
LIHC	TCGA-G3-A3CJ-01	TEX10	ENST00000537512.1	chr9	103108353:103108597:103108975:103109688:103115053:103115165,	103108976	103109688	103109012	103109012	Frame_Shift_Del	C	-	p.G286fs
LIHC	TCGA-G3-A3CJ-01	SMC2	ENST00000440179.1	chr9	106856576:106856729:106860726:106860849:106861924:106861963,	106860727	106860849	106860809	106860809	Frame_Shift_Del	T	-	p.V134fs
LIHC	TCGA-G3-A3CJ-01	SMC2	ENST00000440179.1	chr9	106856576:106856729:106860726:106860849:106861924:106861963,	106860727	106860849	106860811	106860811	Frame_Shift_Del	G	-	p.G135fs
LIHC	TCGA-G3-A3CJ-01	NIPSNAP3B	ENST00000374762.3	chr9	107531143:107531302:107533129:107533279:107535102:107535189,	107533130	107533279	107533148	107533148	Frame_Shift_Del	T	-	p.V150fs
LIHC	TCGA-G3-A3CJ-01	ABCA1	ENST00000374736.3	chr9	107565564:107565597:107566906:107567001:107568521:107568711,	107566907	107567001	107566996	107566996	Frame_Shift_Del	T	-	p.K1490fs
LIHC	TCGA-G3-A3CJ-01	FSD1L	ENST00000374707.1,ENST00000481272.1,ENST00000484973.1,ENST00000374710.3,ENST00000394926.3,ENST00000539376.1	chr9	108296776:108296874:108297347:108297599:108301543:108301632,	108297348	108297599	108297567	108297567	Frame_Shift_Del	A	-	p.E417fs
LIHC	TCGA-G3-A3CJ-01	TMEM38B	ENST00000374688.1,ENST00000374692.3,ENST00000435034.1	chr9	108467955:108468034:108483817:108484002:108484814:108484902,	108483818	108484002	108483960	108483960	Frame_Shift_Del	A	-	p.K84fs
LIHC	TCGA-G3-A3CJ-01	RAD23B	ENST00000457811.1,ENST00000416373.2,ENST00000358015.3	chr9	110068822:110068928:110073962:110074018:110081032:110081160,	110073963	110074018	110073983	110073983	Frame_Shift_Del	G	-	p.R173fs
LIHC	TCGA-G3-A3CJ-01	TMEM245	ENST00000374586.3,ENST00000491854.1,ENST00000413712.2	chr9	111819470:111819602:111822633:111822732:111826756:111826847,	111822634	111822732	111822690	111822690	Frame_Shift_Del	T	-	p.I556fs
LIHC	TCGA-G3-A3CJ-01	EPB41L4B	ENST00000374557.4,ENST00000374566.3	chr9	112005897:112005962:112010035:112010069:112013760:112013791,	112010036	112010069	112010051	112010051	Frame_Shift_Del	T	-	p.E443fs
LIHC	TCGA-G3-A3CJ-01	PTGR1	ENST00000466771.1,ENST00000238248.3,ENST00000374324.1,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114332370:114332489:114337013:114337122:114341075:114341180,	114337014	114337122	114337051	114337051	Frame_Shift_Del	G	-	p.A241fs
LIHC	TCGA-G3-A3CJ-01	PTGR1	ENST00000238248.3,ENST00000407693.2,ENST00000309195.5,ENST00000538962.1	chr9	114348277:114348445:114355205:114355262:114356501:114356545,	114355206	114355262	114355214	114355214	Frame_Shift_Del	T	-	p.Q67fs
LIHC	TCGA-G3-A3CJ-01	SUSD1	ENST00000374264.2,ENST00000374270.3	chr9	114804146:114804240:114820707:114820966:114825216:114825313,114814678:114814718:114820707:114820966:114825216:114825313,	114820708	114820966	114820829	114820829	Frame_Shift_Del	G	-	p.P663fs
LIHC	TCGA-G3-A3CJ-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000532348.1,ENST00000415074.1,ENST00000374270.3	chr9	114875071:114875148:114886536:114886716:114904599:114904746,	114886537	114886716	114886698	114886698	Frame_Shift_Del	G	-	p.P243fs
LIHC	TCGA-G3-A3CJ-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000482851.1,ENST00000374270.3	chr9	114886575:114886716:114904599:114904779:114905750:114905903,	114904600	114904779	114904647	114904647	Frame_Shift_Del	C	-	p.S220fs
LIHC	TCGA-G3-A3CJ-01	FKBP15	ENST00000489645.1,ENST00000446284.1,ENST00000238256.3	chr9	115946571:115946679:115946974:115947084:115948528:115948643,	115946975	115947084	115946995	115946995	Frame_Shift_Del	T	-	p.M530fs
LIHC	TCGA-G3-A3CJ-01	FKBP15	ENST00000489645.1,ENST00000446284.1,ENST00000238256.3	chr9	115946974:115947084:115948528:115948643:115950072:115950179,	115948529	115948643	115948593	115948593	Frame_Shift_Del	G	-	p.T478fs
LIHC	TCGA-G3-A3CJ-01	FKBP15	ENST00000462889.1,ENST00000414250.1,ENST00000238256.3	chr9	115969491:115969576:115973756:115973872:115983470:115983559,	115973757	115973872	115973828	115973828	Frame_Shift_Del	C	-	p.G33fs
LIHC	TCGA-G3-A3CJ-01	ALAD	ENST00000482847.1	chr9	116153806:116153903:116154398:116154615:116155726:116155910,	116154399	116154615	116154415	116154415	Frame_Shift_Del	G	-	p.L50fs
LIHC	TCGA-G3-A3CJ-01	ALAD	ENST00000468504.1,ENST00000409155.3,ENST00000448137.1	chr9	116153806:116153903:116154398:116154449:116155726:116155910,	116154399	116154449	116154415	116154415	Frame_Shift_Del	G	-	p.L50fs
LIHC	TCGA-G3-A3CJ-01	ALAD	ENST00000482847.1	chr9	116154411:116154449:116155726:116155914:116163491:116163523,116154398:116154615:116155726:116155914:116163491:116163523,	116155727	116155914	116155830	116155830	Frame_Shift_Del	G	-	p.Q4fs
LIHC	TCGA-G3-A3CJ-01	ALAD	ENST00000464749.1	chr9	116152907:116153213:116155726:116155910:116163491:116163523,	116155727	116155910	116155830	116155830	Frame_Shift_Del	G	-	p.Q4fs
LIHC	TCGA-G3-A3CJ-01	ZNF618	ENST00000374124.4,ENST00000452710.1,ENST00000288466.7,ENST00000481558.1	chr9	116770756:116770834:116778392:116778452:116778974:116779064,	116778393	116778452	116778414	116778414	Frame_Shift_Del	T	-	p.I227fs
LIHC	TCGA-G3-A3CJ-01	KIF12	ENST00000473174.1,ENST00000374118.3,ENST00000468460.1	chr9	116855585:116855613:116855686:116855777:116856165:116856197,	116855687	116855777	116855694	116855694	Frame_Shift_Del	G	-	p.P357fs
LIHC	TCGA-G3-A3CJ-01	COL27A1	ENST00000356083.3	chr9	116945301:116945355:116956683:116956737:116958238:116958292,	116956684	116956737	116956729	116956729	Frame_Shift_Del	G	-	p.G688fs
LIHC	TCGA-G3-A3CJ-01	COL27A1	ENST00000356083.3,ENST00000494090.2	chr9	117029783:117029837:117031520:117031574:117033007:117033061,	117031521	117031574	117031545	117031545	Frame_Shift_Del	C	-	p.P1176fs
LIHC	TCGA-G3-A3CJ-01	AKNA	ENST00000223791.3,ENST00000374079.4,ENST00000374075.5,ENST00000374088.3,ENST00000492875.1,ENST00000307564.4	chr9	117098444:117099586:117103812:117104005:117104288:117104405,	117103813	117104005	117103911	117103911	Frame_Shift_Del	G	-	p.P1323fs
LIHC	TCGA-G3-A3CJ-01	AKNA	ENST00000312033.3,ENST00000374088.3,ENST00000307564.4	chr9	117136372:117136447:117138745:117139812:117143339:117143726,	117138746	117139812	117138780	117138780	Frame_Shift_Del	G	-	p.P436fs
LIHC	TCGA-G3-A3CJ-01	TNC	ENST00000350763.4	chr9	117804497:117804620:117822008:117822281:117825195:117825447,117819431:117819704:117822008:117822281:117826074:117826240,117819431:117819704:117822008:117822281:117825195:117825447,	117822009	117822281	117822047	117822047	Frame_Shift_Del	C	-	p.G1423fs
LIHC	TCGA-G3-A3CJ-01	TNC	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1	chr9	117838668:117838854:117840221:117840491:117844050:117844207,	117840222	117840491	117840417	117840417	Frame_Shift_Del	G	-	p.L827fs
LIHC	TCGA-G3-A3CJ-01	TNC	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1	chr9	117838668:117838854:117840221:117840491:117844050:117844207,	117840222	117840491	117840478	117840478	Frame_Shift_Del	G	-	p.P806fs
LIHC	TCGA-G3-A3CJ-01	PAPPA	ENST00000328252.3	chr9	118989709:118989831:118997417:118997916:119028135:119028264,	118997418	118997916	118997624	118997624	Frame_Shift_Del	A	-	p.N814fs
LIHC	TCGA-G3-A3CJ-01	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119028135:119028264:119033603:119033695:119065035:119065229,	119033604	119033695	119033660	119033660	Frame_Shift_Del	T	-	p.L973fs
LIHC	TCGA-G3-A3CJ-01	PAPPA	ENST00000534838.1,ENST00000328252.3	chr9	119114984:119115195:119115900:119116072:119124870:119125018,	119115901	119116072	119115959	119115959	Frame_Shift_Del	C	-	p.P1412fs
LIHC	TCGA-G3-A3CJ-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119491270:119491375:119495677:119495802:119567910:119568099,	119495678	119495802	119495702	119495702	Frame_Shift_Del	G	-	p.L833fs
LIHC	TCGA-G3-A3CJ-01	CDK5RAP2	ENST00000483412.1,ENST00000416449.1,ENST00000360822.3,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4,ENST00000425647.1	chr9	123184970:123185019:123199572:123199805:123201676:123202250,	123199573	123199805	123199635	123199635	Frame_Shift_Del	A	-	p.F1298fs
LIHC	TCGA-G3-A3CJ-01	CDK5RAP2	ENST00000483412.1,ENST00000360822.3,ENST00000482047.1,ENST00000480112.1,ENST00000473282.2,ENST00000359309.3,ENST00000360190.4,ENST00000349780.4	chr9	123280877:123280923:123287263:123287356:123290083:123290203,	123287264	123287356	123287275	123287275	Frame_Shift_Del	G	-	p.Q361fs
LIHC	TCGA-G3-A3CJ-01	TRAF1	ENST00000540010.1	chr9	123685982:123686070:123688213:123688579:123688827:123688966,	123688214	123688579	123688322	123688322	Frame_Shift_Del	G	-	p.P11fs
LIHC	TCGA-G3-A3CJ-01	RAB14	ENST00000373840.4,ENST00000451303.1	chr9	123949230:123949297:123952831:123953009:123954448:123954502,	123952832	123953009	123952920	123952920	Frame_Shift_Del	C	-	p.D66fs
LIHC	TCGA-G3-A3CJ-01	RAB14	ENST00000373840.4,ENST00000451303.1	chr9	123949230:123949297:123952831:123953009:123954448:123954502,	123952832	123953009	123952938	123952938	Frame_Shift_Del	T	-	p.I60fs
LIHC	TCGA-G3-A3CJ-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124530710:124530912:124532824:124533003:124534885:124535774,	124532825	124533003	124532860	124532860	Frame_Shift_Del	C	-	p.I645fs
LIHC	TCGA-G3-A3CJ-01	NDUFA8	ENST00000373768.3	chr9	124910390:124910556:124914523:124914687:124921905:124922066,	124914524	124914687	124914536	124914536	Frame_Shift_Del	A	-	p.L68fs
LIHC	TCGA-G3-A3CJ-01	MORN5	ENST00000418632.1,ENST00000373764.3,ENST00000536616.1	chr9	124929046:124929194:124931923:124932035:124936774:124936847,	124931924	124932035	124931984	124931984	Frame_Shift_Del	G	-	p.G86fs
LIHC	TCGA-G3-A3CJ-01	MRRF	ENST00000344641.3,ENST00000394315.3,ENST00000373729.1,ENST00000373723.5	chr9	125033231:125033354:125047447:125047566:125054027:125054077,125042721:125042877:125047447:125047566:125054027:125054077,	125047448	125047566	125047451	125047451	Frame_Shift_Del	C	-	p.S115fs
LIHC	TCGA-G3-A3CJ-01	RC3H2	ENST00000423239.2,ENST00000357244.2,ENST00000373670.1	chr9	125622195:125622410:125627627:125627936:125639749:125639862,	125627628	125627936	125627838	125627838	Frame_Shift_Del	T	-	p.N475fs
LIHC	TCGA-G3-A3CJ-01	RABGAP1	ENST00000373647.4,ENST00000459903.1,ENST00000317419.7	chr9	125719427:125719488:125746763:125746998:125748493:125748695,	125746764	125746998	125746795	125746795	Frame_Shift_Del	A	-	p.Q61fs
LIHC	TCGA-G3-A3CJ-01	RABGAP1	ENST00000373647.4,ENST00000459903.1,ENST00000317419.7	chr9	125719427:125719488:125746763:125746998:125748493:125748695,	125746764	125746998	125746863	125746863	Frame_Shift_Del	A	-	p.K84fs
LIHC	TCGA-G3-A3CJ-01	RABGAP1	ENST00000373647.4,ENST00000459903.1,ENST00000317419.7	chr9	125719427:125719488:125746763:125746998:125748493:125748695,	125746764	125746998	125746900	125746900	Frame_Shift_Del	T	-	p.L96fs
LIHC	TCGA-G3-A3CJ-01	STRBP	ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2	chr9	125898319:125898460:125898659:125898794:125901807:125901966,	125898660	125898794	125898728	125898728	Frame_Shift_Del	T	-	p.R523fs
LIHC	TCGA-G3-A3CJ-01	DENND1A	ENST00000479305.1,ENST00000542603.1,ENST00000473039.1,ENST00000497135.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000491650.1,ENST00000373618.1,ENST00000394215.2	chr9	126202638:126202770:126212971:126213028:126214554:126214622,	126212972	126213028	126212988	126212988	Frame_Shift_Del	T	-	p.N447fs
LIHC	TCGA-G3-A3CJ-01	DENND1A	ENST00000479305.1,ENST00000542603.1,ENST00000473039.1,ENST00000497135.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000491650.1,ENST00000373618.1,ENST00000394215.2	chr9	126202638:126202770:126212971:126213028:126214554:126214622,	126212972	126213028	126213006	126213006	Frame_Shift_Del	C	-	p.G441fs
LIHC	TCGA-G3-A3CJ-01	LHX2	ENST00000446480.1	chr9	126776239:126776442:126777376:126777804:126783377:126783583,	126777377	126777804	126777762	126777762	Frame_Shift_Del	A	-	p.K229fs
LIHC	TCGA-G3-A3CJ-01	LHX2	ENST00000373615.4	chr9	126776239:126776442:126777400:126777804:126783377:126783583,	126777401	126777804	126777762	126777762	Frame_Shift_Del	A	-	p.K229fs
LIHC	TCGA-G3-A3CJ-01	PSMB7	ENST00000259457.3	chr9	127146876:127146935:127167595:127167711:127174630:127174771,	127167596	127167711	127167673	127167673	Frame_Shift_Del	C	-	p.G145fs
LIHC	TCGA-G3-A3CJ-01	GOLGA1	ENST00000421514.1,ENST00000373555.4	chr9	127690527:127690564:127691494:127691569:127693594:127693685,	127691495	127691569	127691505	127691505	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-G3-A3CJ-01	RABEPK	ENST00000373544.1,ENST00000394125.4,ENST00000394124.4,ENST00000373538.3	chr9	127965286:127965345:127969842:127970000:127982817:127982937,127965286:127965345:127969842:127970000:127975648:127975801,	127969843	127970000	127969949	127969949	Frame_Shift_Del	G	-	p.G55fs
LIHC	TCGA-G3-A3CJ-01	MAPKAP1	ENST00000420643.1,ENST00000473837.1,ENST00000497932.1,ENST00000373511.2,ENST00000373503.3,ENST00000394060.3,ENST00000427078.1,ENST00000394063.1,ENST00000265960.3,ENST00000373498.1,ENST00000350766.3	chr9	128305337:128305447:128321911:128322088:128347833:128347906,	128321912	128322088	128322020	128322020	Frame_Shift_Del	G	-	p.P247fs
LIHC	TCGA-G3-A3CJ-01	MAPKAP1	ENST00000448439.1,ENST00000373511.2,ENST00000373503.3,ENST00000394060.3,ENST00000265960.3,ENST00000373498.1,ENST00000350766.3	chr9	128347833:128348006:128419929:128420078:128469249:128469456,128347833:128348006:128419929:128420078:128432096:128432124,	128419930	128420078	128420017	128420017	Frame_Shift_Del	C	-	p.G137fs
LIHC	TCGA-G3-A3CJ-01	MAPKAP1	ENST00000373503.3	chr9	128419947:128420078:128432096:128432186:128469249:128469456,	128432097	128432186	128432132	128432132	Frame_Shift_Del	T	-	p.N105fs
LIHC	TCGA-G3-A3CJ-01	MAPKAP1	ENST00000373503.3	chr9	128419947:128420078:128432096:128432186:128469249:128469456,	128432097	128432186	128432150	128432150	Frame_Shift_Del	T	-	p.N99fs
LIHC	TCGA-G3-A3CJ-01	PBX3	ENST00000373492.2,ENST00000373483.2,ENST00000373482.2	chr9	128510828:128510902:128691933:128692124:128697750:128697810,	128691934	128692124	128692041	128692041	Frame_Shift_Del	A	-	p.R208fs
LIHC	TCGA-G3-A3CJ-01	RALGPS1	ENST00000319107.4	chr9	129739973:129740024:129796709:129796793:129812321:129812411,129739973:129740024:129796709:129796793:129815125:129815218,	129796710	129796793	129796777	129796777	Frame_Shift_Del	C	-	p.T95fs
LIHC	TCGA-G3-A3CJ-01	RALGPS1	ENST00000259351.5,ENST00000424082.2,ENST00000438723.1,ENST00000471643.1	chr9	129974954:129974998:129975222:129975328:129977029:129977121,	129975223	129975328	129975241	129975241	Frame_Shift_Del	A	-	p.K490fs
LIHC	TCGA-G3-A3CJ-01	SLC2A8	ENST00000373371.3,ENST00000451404.1,ENST00000423934.1,ENST00000373360.3,ENST00000419917.1,ENST00000430147.1	chr9	130162242:130162285:130164835:130165032:130166016:130166070,130162242:130162285:130164835:130165032:130165938:130166026,	130164836	130165032	130165011	130165011	Frame_Shift_Del	C	-	p.D234fs
LIHC	TCGA-G3-A3CJ-01	FPGS	ENST00000423577.1,ENST00000393706.2	chr9	130566914:130566979:130569251:130569366:130569487:130569558,130566914:130566979:130569251:130569366:130569699:130569761,	130569252	130569366	130569275	130569275	Frame_Shift_Del	G	-	p.R137fs
LIHC	TCGA-G3-A3CJ-01	FPGS	ENST00000460181.1	chr9	130566914:130566979:130569270:130569366:130569487:130569558,	130569271	130569366	130569275	130569275	Frame_Shift_Del	G	-	p.R137fs
LIHC	TCGA-G3-A3CJ-01	FPGS	ENST00000460181.1,ENST00000393706.2,ENST00000489522.1,ENST00000488506.1,ENST00000488307.1,ENST00000373247.2,ENST00000373225.3,ENST00000467826.1	chr9	130570542:130570590:130570836:130570984:130571078:130571161,	130570837	130570984	130570879	130570879	Frame_Shift_Del	G	-	p.G240fs
LIHC	TCGA-G3-A3CJ-01	FAM102A	ENST00000479828.1,ENST00000373095.1	chr9	130712701:130712818:130715853:130715883:130716083:130716204,	130715854	130715883	130715869	130715869	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-G3-A3CJ-01	SLC25A25	ENST00000373069.5,ENST00000373066.5	chr9	130863587:130863675:130864358:130864394:130864648:130864760,	130864359	130864394	130864379	130864379	Frame_Shift_Del	G	-	p.W152fs
LIHC	TCGA-G3-A3CJ-01	PTGES2	ENST00000493205.1,ENST00000496594.1	chr9	130883104:130883552:130884640:130885413:130885980:130886034,	130884641	130885413	130884666	130884666	Frame_Shift_Del	C	-	p.G327fs
LIHC	TCGA-G3-A3CJ-01	SLC27A4	ENST00000300456.4	chr9	131114916:131115026:131115303:131115513:131115693:131115820,	131115304	131115513	131115356	131115356	Frame_Shift_Del	G	-	p.R347fs
LIHC	TCGA-G3-A3CJ-01	URM1	ENST00000452446.1,ENST00000372850.1	chr9	131133649:131133694:131140314:131140385:131150094:131150174,	131140315	131140385	131140363	131140363	Frame_Shift_Del	T	-	p.T28fs
LIHC	TCGA-G3-A3CJ-01	URM1	ENST00000470840.1,ENST00000372847.1	chr9	131133649:131133694:131140273:131140385:131150094:131150174,	131140274	131140385	131140363	131140363	Frame_Shift_Del	T	-	p.T28fs
LIHC	TCGA-G3-A3CJ-01	GLE1	ENST00000372770.4,ENST00000539582.1	chr9	131267084:131267183:131271154:131271376:131277807:131277918,	131271155	131271376	131271362	131271362	Frame_Shift_Del	C	-	p.P103fs
LIHC	TCGA-G3-A3CJ-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131346560:131346804:131346999:131347122:131348026:131348244,	131347000	131347122	131347014	131347014	Frame_Shift_Del	G	-	p.G818fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC12	ENST00000452105.1,ENST00000372672.2	chr9	131484287:131484365:131484716:131484853:131486272:131486385,	131484717	131484853	131484827	131484827	Frame_Shift_Del	C	-	p.E57fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC12	ENST00000406904.2	chr9	131484287:131484365:131484716:131485018:131486272:131486385,	131484717	131485018	131484827	131484827	Frame_Shift_Del	C	-	p.E57fs
LIHC	TCGA-G3-A3CJ-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131670211	131670211	Frame_Shift_Del	G	-	p.E256fs
LIHC	TCGA-G3-A3CJ-01	LRRC8A	ENST00000259324.5,ENST00000372600.4	chr9	131648293:131648400:131669435:131671600:131678374:131679018,	131669436	131671600	131671261	131671261	Frame_Shift_Del	C	-	p.I606fs
LIHC	TCGA-G3-A3CJ-01	DOLPP1	ENST00000406974.3,ENST00000327812.8,ENST00000540102.1	chr9	131847485:131847585:131847796:131847895:131848987:131849077,	131847797	131847895	131847853	131847853	Frame_Shift_Del	C	-	p.S140fs
LIHC	TCGA-G3-A3CJ-01	CRAT	ENST00000318080.2,ENST00000458362.1	chr9	131862789:131862968:131864161:131864336:131864678:131864764,	131864162	131864336	131864331	131864331	Frame_Shift_Del	A	-	p.F212fs
LIHC	TCGA-G3-A3CJ-01	NTMT1	ENST00000481189.1	chr9	132390885:132390994:132394928:132395080:132396332:132396500,132388483:132388574:132394928:132395080:132396332:132396428,	132394929	132395080	132395076	132395076	Frame_Shift_Del	G	-	p.G33fs
LIHC	TCGA-G3-A3CJ-01	NTMT1	ENST00000372483.4,ENST00000372481.3	chr9	132388483:132388574:132394928:132395144:132396332:132396428,	132394929	132395144	132395076	132395076	Frame_Shift_Del	G	-	p.G33fs
LIHC	TCGA-G3-A3CJ-01	NTMT1	ENST00000372483.4,ENST00000372481.3	chr9	132388483:132388574:132394928:132395144:132396332:132396428,	132394929	132395144	132395143	132395143	Frame_Shift_Del	G	-	p.R54fs
LIHC	TCGA-G3-A3CJ-01	FNBP1	ENST00000355681.3	chr9	132678244:132678259:132686122:132686218:132687238:132687348,	132686123	132686218	132686130	132686130	Frame_Shift_Del	T	-	p.K378fs
LIHC	TCGA-G3-A3CJ-01	FNBP1	ENST00000446176.2	chr9	132678244:132678259:132686122:132686305:132687238:132687348,	132686123	132686305	132686130	132686130	Frame_Shift_Del	T	-	p.K378fs
LIHC	TCGA-G3-A3CJ-01	FNBP1	ENST00000449089.2	chr9	132671168:132671278:132686122:132686275:132687238:132687348,	132686123	132686275	132686130	132686130	Frame_Shift_Del	T	-	p.K378fs
LIHC	TCGA-G3-A3CJ-01	GPR107	ENST00000372410.3,ENST00000493417.1,ENST00000347136.6	chr9	132816199:132816352:132837914:132838028:132838690:132838741,	132837915	132838028	132838008	132838008	Frame_Shift_Del	C	-	p.P79fs
LIHC	TCGA-G3-A3CJ-01	GPR107	ENST00000372406.1,ENST00000372410.3,ENST00000347136.6	chr9	132889761:132889845:132890918:132891040:132897303:132899179,	132890919	132891040	132890960	132890960	Frame_Shift_Del	G	-	p.T542fs
LIHC	TCGA-G3-A3CJ-01	HMCN2	ENST00000428715.1	chr9	133285957:133286039:133294158:133294428:133297963:133298113,	133294159	133294428	133294182	133294182	Frame_Shift_Del	C	-	p.P39fs
LIHC	TCGA-G3-A3CJ-01	HMCN2	ENST00000428715.1	chr9	133285957:133286039:133294158:133294428:133297963:133298113,	133294159	133294428	133294288	133294288	Frame_Shift_Del	G	-	p.R74fs
LIHC	TCGA-G3-A3CJ-01	FUBP3	ENST00000319725.9	chr9	133507588:133507665:133510053:133510125:133511385:133511513,	133510054	133510125	133510116	133510116	Frame_Shift_Del	A	-	p.K526fs
LIHC	TCGA-G3-A3CJ-01	ABL1	ENST00000318560.5,ENST00000372348.2	chr9	133730187:133730483:133738149:133738422:133747515:133747600,	133738150	133738422	133738286	133738286	Frame_Shift_Del	C	-	p.S229fs
LIHC	TCGA-G3-A3CJ-01	NUP214	ENST00000483497.2,ENST00000451030.1,ENST00000359428.5,ENST00000453861.2,ENST00000411637.2	chr9	134090598:134090755:134098164:134098317:134103546:134103615,	134098165	134098317	134098285	134098285	Frame_Shift_Del	A	-	p.Q1957fs
LIHC	TCGA-G3-A3CJ-01	NUP214	ENST00000483497.2,ENST00000451030.1,ENST00000359428.5,ENST00000411637.2	chr9	134098164:134098317:134103546:134103718:134106016:134106156,	134103547	134103718	134103570	134103570	Frame_Shift_Del	T	-	p.F1976fs
LIHC	TCGA-G3-A3CJ-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000372249.1,ENST00000357304.4	chr9	134323048:134323191:134330462:134330553:134334550:134334743,	134330463	134330553	134330548	134330548	Frame_Shift_Del	A	-	p.P402fs
LIHC	TCGA-G3-A3CJ-01	PRRC2B	ENST00000405995.1,ENST00000458550.1	chr9	134346174:134346370:134348894:134349111:134353130:134353336,	134348895	134349111	134348933	134348933	Frame_Shift_Del	G	-	p.G716fs
LIHC	TCGA-G3-A3CJ-01	POMT1	ENST00000448212.1,ENST00000462375.1,ENST00000402686.3,ENST00000441334.1,ENST00000354713.4,ENST00000430619.1,ENST00000404875.2,ENST00000372228.3,ENST00000423007.1,ENST00000341012.7,ENST00000419118.2	chr9	134384312:134384409:134385129:134385195:134385289:134385383,	134385130	134385195	134385193	134385193	Frame_Shift_Del	G	-	p.V201fs
LIHC	TCGA-G3-A3CJ-01	POMT1	ENST00000485278.1,ENST00000467848.1,ENST00000402686.3,ENST00000354713.4,ENST00000404875.2,ENST00000372220.4,ENST00000372228.3,ENST00000423007.1,ENST00000341012.7,ENST00000419118.2	chr9	134394780:134394873:134395466:134395580:134396732:134396791,	134395467	134395580	134395568	134395568	Frame_Shift_Del	C	-	p.H562fs
LIHC	TCGA-G3-A3CJ-01	RAPGEF1	ENST00000372189.3,ENST00000372195.1,ENST00000372190.3,ENST00000427994.1	chr9	134514095:134514178:134518625:134518804:134526196:134526336,134514095:134514178:134518625:134518804:134525515:134525629,	134518626	134518804	134518711	134518711	Frame_Shift_Del	C	-	p.V137fs
LIHC	TCGA-G3-A3CJ-01	MED27	ENST00000292035.5	chr9	134889723:134889854:134952828:134952973:134955028:134955253,	134952829	134952973	134952876	134952876	Frame_Shift_Del	T	-	p.T101fs
LIHC	TCGA-G3-A3CJ-01	NTNG2	ENST00000393228.4,ENST00000360670.3,ENST00000372179.3	chr9	135037333:135037626:135041735:135042431:135073352:135073996,	135041736	135042431	135042267	135042267	Frame_Shift_Del	G	-	p.G17fs
LIHC	TCGA-G3-A3CJ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2,ENST00000436441.1	chr9	135163936:135164038:135171258:135171415:135172273:135172441,	135171259	135171415	135171373	135171373	Frame_Shift_Del	T	-	p.I1998fs
LIHC	TCGA-G3-A3CJ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135201910	135201910	Frame_Shift_Del	A	-	p.L1692fs
LIHC	TCGA-G3-A3CJ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203788	135203788	Frame_Shift_Del	T	-	p.K1066fs
LIHC	TCGA-G3-A3CJ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135204647	135204647	Frame_Shift_Del	T	-	p.T780fs
LIHC	TCGA-G3-A3CJ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135205170	135205170	Frame_Shift_Del	A	-	p.F605fs
LIHC	TCGA-G3-A3CJ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135206663:135206835:135209994:135210114:135211682:135211902,	135209995	135210114	135210042	135210042	Frame_Shift_Del	T	-	p.N264fs
LIHC	TCGA-G3-A3CJ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135209994:135210114:135211682:135211902:135218076:135218186,	135211683	135211902	135211695	135211695	Frame_Shift_Del	T	-	p.S236fs
LIHC	TCGA-G3-A3CJ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135218076:135218186:135221647:135221858:135224638:135224822,	135221648	135221858	135221710	135221710	Frame_Shift_Del	T	-	p.K109fs
LIHC	TCGA-G3-A3CJ-01	DDX31	ENST00000372159.3,ENST00000438527.3	chr9	135487473:135487642:135493716:135493828:135501050:135501132,	135493717	135493828	135493807	135493807	Frame_Shift_Del	G	-	p.Q684fs
LIHC	TCGA-G3-A3CJ-01	CEL	ENST00000372080.4	chr9	135944442:135944646:135945847:135946045:135946373:135946557,	135945848	135946045	135945914	135945914	Frame_Shift_Del	G	-	p.V454fs
LIHC	TCGA-G3-A3CJ-01	REXO4	ENST00000478037.1	chr9	136277897:136278041:136279784:136279953:136282739:136283074,	136279785	136279953	136279794	136279794	Frame_Shift_Del	G	-	p.P189fs
LIHC	TCGA-G3-A3CJ-01	SLC2A6	ENST00000371899.4,ENST00000432868.1	chr9	136342156:136342363:136343375:136343538:136344089:136344197,	136343376	136343538	136343472	136343472	Frame_Shift_Del	C	-	p.G53fs
LIHC	TCGA-G3-A3CJ-01	SARDH	ENST00000427237.2,ENST00000422262.2,ENST00000371872.4,ENST00000439388.1	chr9	136568037:136568151:136570069:136570153:136573408:136573550,	136570070	136570153	136570084	136570084	Frame_Shift_Del	G	-	p.R514fs
LIHC	TCGA-G3-A3CJ-01	BRD3	ENST00000473349.1	chr9	136899822:136899951:136901153:136901446:136906881:136906916,	136901154	136901446	136901171	136901171	Frame_Shift_Del	T	-	p.K640fs
LIHC	TCGA-G3-A3CJ-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138714191	138714191	Frame_Shift_Del	T	-	p.K772fs
LIHC	TCGA-G3-A3CJ-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138714778	138714778	Frame_Shift_Del	G	-	p.Q577fs
LIHC	TCGA-G3-A3CJ-01	CARD9	ENST00000460290.1,ENST00000371732.5,ENST00000489932.2,ENST00000481053.1,ENST00000371734.3	chr9	139259592:139259669:139261251:139261297:139261667:139261709,	139261252	139261297	139261276	139261276	Frame_Shift_Del	C	-	p.E445fs
LIHC	TCGA-G3-A3CJ-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1,ENST00000277537.6	chr9	139347879:139347962:139348560:139348779:139350052:139350245,	139348561	139348779	139348689	139348689	Frame_Shift_Del	C	-	p.G1983fs
LIHC	TCGA-G3-A3CJ-01	EGFL7	ENST00000371698.3,ENST00000371699.1,ENST00000308874.7,ENST00000406555.3	chr9	139565401:139565466:139566377:139566540:139566715:139567129,	139566378	139566540	139566450	139566450	Frame_Shift_Del	G	-	p.G237fs
LIHC	TCGA-G3-A3CJ-01	LCN15	ENST00000316144.5,ENST00000482511.1	chr9	139656238:139656305:139656639:139656741:139657808:139657919,	139656640	139656741	139656669	139656669	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-G3-A3CJ-01	DPP7	ENST00000463619.1,ENST00000483783.1,ENST00000371579.2	chr9	140005331:140005402:140006141:140006206:140006324:140006481,	140006142	140006206	140006157	140006157	Frame_Shift_Del	G	-	p.P419fs
LIHC	TCGA-G3-A3CJ-01	TUBB4B	ENST00000340384.4	chr9	140136172:140136281:140136362:140136473:140136947:140138159,	140136363	140136473	140136430	140136430	Frame_Shift_Del	G	-	p.S78fs
LIHC	TCGA-G3-A3CJ-01	EXD3	ENST00000487745.1,ENST00000342129.4,ENST00000340951.4,ENST00000491734.2	chr9	140218176:140218308:140218541:140218595:140242522:140242603,	140218542	140218595	140218557	140218557	Frame_Shift_Del	C	-	p.G679fs
LIHC	TCGA-G3-A3CJ-01	EXD3	ENST00000487745.1,ENST00000342129.4,ENST00000340951.4,ENST00000478344.2,ENST00000491734.2,ENST00000478350.1	chr9	140245927:140245980:140246517:140246653:140247071:140247176,	140246518	140246653	140246584	140246584	Frame_Shift_Del	G	-	p.P369fs
LIHC	TCGA-G3-A3CJ-01	NOXA1	ENST00000341349.2,ENST00000392815.2	chr9	140325687:140325793:140327480:140327526:140327656:140327715,	140327481	140327526	140327505	140327505	Frame_Shift_Del	A	-	p.K277fs
LIHC	TCGA-G3-A3CJ-01	NOXA1	ENST00000341349.2,ENST00000392815.2	chr9	140327656:140327715:140327904:140328059:140328201:140328316,	140327905	140328059	140327929	140327929	Frame_Shift_Del	C	-	p.P312fs
LIHC	TCGA-G3-A3CJ-01	ENTPD8	ENST00000461823.1,ENST00000371506.2,ENST00000472938.1,ENST00000493135.1,ENST00000344119.2	chr9	140331610:140331761:140332418:140332536:140332611:140332698,	140332419	140332536	140332497	140332497	Frame_Shift_Del	G	-	p.L56fs
LIHC	TCGA-G3-A3CJ-01	CACNA1B	ENST00000277551.2,ENST00000371357.1,ENST00000371363.1,ENST00000371372.1,ENST00000277549.5,ENST00000371355.4	chr9	140919406:140919624:140938225:140938352:140941355:140941485,	140938226	140938352	140938299	140938299	Frame_Shift_Del	C	-	p.G312fs
LIHC	TCGA-G3-A3CJ-01	WDR37	ENST00000263150.4,ENST00000482165.1,ENST00000358220.1	chr10	1170157:1170292:1170849:1170964:1175152:1175192,	1170850	1170964	1170886	1170886	Frame_Shift_Del	C	-	p.L425fs
LIHC	TCGA-G3-A3CJ-01	AKR1E2	ENST00000298375.7,ENST00000474119.1,ENST00000525572.1,ENST00000463345.1	chr10	4879650:4879773:4881920:4882018:4883976:4884032,	4881921	4882018	4881962	4881962	Frame_Shift_Del	T	-	p.S208fs
LIHC	TCGA-G3-A3CJ-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000380554.3	chr10	5144296:5144402:5144676:5144842:5147786:5147869,	5144677	5144842	5144731	5144731	Frame_Shift_Del	A	-	p.A245fs
LIHC	TCGA-G3-A3CJ-01	AKR1C4	ENST00000380448.1,ENST00000263126.1	chr10	5246366:5246456:5247719:5247797:5248237:5248360,	5247720	5247797	5247755	5247755	Frame_Shift_Del	A	-	p.G135fs
LIHC	TCGA-G3-A3CJ-01	TUBAL3	ENST00000479328.1	chr10	5437289:5437438:5442806:5442930:5446752:5446791,	5442807	5442930	5442909	5442909	Frame_Shift_Del	T	-	p.M49fs
LIHC	TCGA-G3-A3CJ-01	ASB13	ENST00000459912.1,ENST00000357700.6	chr10	5693175:5693326:5694825:5695013:5708471:5708541,	5694826	5695013	5694992	5694992	Frame_Shift_Del	G	-	p.P22fs
LIHC	TCGA-G3-A3CJ-01	ANKRD16	ENST00000380094.5,ENST00000380092.4	chr10	5920084:5920250:5922260:5922339:5924968:5925130,	5922261	5922339	5922269	5922269	Frame_Shift_Del	T	-	p.N307fs
LIHC	TCGA-G3-A3CJ-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7762818:7762926:7763611:7763740:7765413:7765530,	7763612	7763740	7763684	7763684	Frame_Shift_Del	G	-	p.G271fs
LIHC	TCGA-G3-A3CJ-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7768912:7769081:7769665:7769791:7771914:7772096,	7769666	7769791	7769705	7769705	Frame_Shift_Del	T	-	p.I398fs
LIHC	TCGA-G3-A3CJ-01	CELF2	ENST00000537122.1,ENST00000609870.1	chr10	11259387:11259470:11291115:11291164:11299700:11299835,11207490:11207645:11291115:11291164:11299700:11299835,	11291116	11291164	11291153	11291153	Frame_Shift_Del	A	-	p.E124fs
LIHC	TCGA-G3-A3CJ-01	CELF2	ENST00000354897.3,ENST00000417956.2,ENST00000537122.1,ENST00000416382.2,ENST00000427450.1,ENST00000450189.1,ENST00000379261.4,ENST00000399850.3,ENST00000354440.2,ENST00000609870.1,ENST00000315874.4,ENST00000542579.1,ENST00000608830.1	chr10	11363169:11363349:11367798:11367942:11370888:11371055,	11367799	11367942	11367806	11367806	Frame_Shift_Del	G	-	p.E421fs
LIHC	TCGA-G3-A3CJ-01	PROSER2	ENST00000277570.5	chr10	11893995:11894214:11908529:11908782:11911488:11914276,	11908530	11908782	11908663	11908663	Frame_Shift_Del	C	-	p.S91fs
LIHC	TCGA-G3-A3CJ-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11990367:11990507:11994064:11994248:11997230:11997506,	11994065	11994248	11994207	11994207	Frame_Shift_Del	T	-	p.K964fs
LIHC	TCGA-G3-A3CJ-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11994064:11994248:11997230:11997506:11998318:11998522,	11997231	11997506	11997331	11997331	Frame_Shift_Del	A	-	p.F917fs
LIHC	TCGA-G3-A3CJ-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11994064:11994248:11997230:11997506:11998318:11998522,	11997231	11997506	11997384	11997384	Frame_Shift_Del	A	-	p.F899fs
LIHC	TCGA-G3-A3CJ-01	CDC123	ENST00000455773.3,ENST00000442050.1,ENST00000429258.2,ENST00000281141.4,ENST00000378900.2	chr10	12238230:12238318:12240703:12240775:12251965:12252023,	12240704	12240775	12240753	12240753	Frame_Shift_Del	G	-	p.G42fs
LIHC	TCGA-G3-A3CJ-01	CCDC3	ENST00000378839.1	chr10	12938626:12940679:13040337:13040512:13091673:13091941,	13040338	13040512	13040358	13040358	Frame_Shift_Del	C	-	p.E52fs
LIHC	TCGA-G3-A3CJ-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13165994:13166110:13167417:13167567:13167945:13168039,	13167418	13167567	13167564	13167564	Frame_Shift_Del	A	-	p.E382fs
LIHC	TCGA-G3-A3CJ-01	PHYH	ENST00000263038.4,ENST00000453759.2,ENST00000396913.2	chr10	13325689:13325839:13330359:13330541:13333830:13333912,	13330360	13330541	13330380	13330380	Frame_Shift_Del	G	-	p.H203fs
LIHC	TCGA-G3-A3CJ-01	BEND7	ENST00000396900.2,ENST00000466271.1	chr10	13538787:13538888:13541777:13542080:13568137:13568221,	13541778	13542080	13542056	13542056	Frame_Shift_Del	T	-	p.K5fs
LIHC	TCGA-G3-A3CJ-01	BEND7	ENST00000396898.2	chr10	13538787:13538888:13541738:13542080:13568137:13568221,	13541739	13542080	13542056	13542056	Frame_Shift_Del	T	-	p.K5fs
LIHC	TCGA-G3-A3CJ-01	FRMD4A	ENST00000492155.1,ENST00000378503.1,ENST00000342409.2,ENST00000477221.1,ENST00000358621.4,ENST00000357447.2,ENST00000264546.6	chr10	13735982:13736039:13743339:13743478:13749036:13749113,	13743340	13743478	13743451	13743451	Frame_Shift_Del	C	-	p.G288fs
LIHC	TCGA-G3-A3CJ-01	SUV39H2	ENST00000378325.3,ENST00000354919.6	chr10	14920920:14920959:14923498:14923644:14938844:14938976,14920887:14920918:14923498:14923644:14938844:14938976,	14923499	14923644	14923588	14923588	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	DCLRE1C	ENST00000378249.1,ENST00000378254.1,ENST00000378255.1,ENST00000378289.4,ENST00000378246.2,ENST00000418843.1,ENST00000378278.2,ENST00000453695.2,ENST00000396817.2,ENST00000378258.1,ENST00000357717.2	chr10	14974852:14974954:14976378:14976519:14976701:14976774,	14976379	14976519	14976381	14976381	Frame_Shift_Del	G	-	p.Q106fs
LIHC	TCGA-G3-A3CJ-01	DCLRE1C	ENST00000378254.1,ENST00000378255.1,ENST00000378289.4,ENST00000378278.2,ENST00000453695.2,ENST00000378241.1,ENST00000396817.2,ENST00000378258.1	chr10	14976721:14976774:14977461:14977563:14978536:14978592,	14977462	14977563	14977497	14977497	Frame_Shift_Del	T	-	p.E23fs
LIHC	TCGA-G3-A3CJ-01	DCLRE1C	ENST00000418843.1	chr10	14976721:14976774:14977461:14977522:14978536:14978592,	14977462	14977522	14977497	14977497	Frame_Shift_Del	T	-	p.E23fs
LIHC	TCGA-G3-A3CJ-01	DCLRE1C	ENST00000378254.1,ENST00000378289.4,ENST00000418843.1,ENST00000378278.2,ENST00000453695.2,ENST00000378258.1	chr10	14977461:14977563:14981808:14981868:14987103:14987188,14978536:14978592:14981808:14981868:14987103:14987188,	14981809	14981868	14981856	14981856	Frame_Shift_Del	T	-	p.I87fs
LIHC	TCGA-G3-A3CJ-01	ITGA8	ENST00000378076.3	chr10	15600072:15600201:15614209:15614368:15617487:15617593,	15614210	15614368	15614238	15614238	Frame_Shift_Del	T	-	p.N870fs
LIHC	TCGA-G3-A3CJ-01	RSU1	ENST00000345264.5,ENST00000377921.3,ENST00000602389.1,ENST00000377911.1	chr10	16796869:16796988:16806388:16806509:16824032:16824083,	16806389	16806509	16806457	16806457	Frame_Shift_Del	A	-	p.F71fs
LIHC	TCGA-G3-A3CJ-01	CUBN	ENST00000377833.4	chr10	17032332:17032514:17061831:17061982:17083031:17083219,	17061832	17061982	17061877	17061877	Frame_Shift_Del	C	-	p.V1375fs
LIHC	TCGA-G3-A3CJ-01	STAM	ENST00000540523.1	chr10	17686263:17686378:17702462:17702547:17730025:17730156,	17702463	17702547	17702508	17702508	Frame_Shift_Del	T	-	p.I29fs
LIHC	TCGA-G3-A3CJ-01	TMEM236	ENST00000338221.5	chr10	17794259:17794551:17813307:17813380:17818027:17818169,	17813308	17813380	17813360	17813360	Frame_Shift_Del	T	-	p.F104fs
LIHC	TCGA-G3-A3CJ-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21903759:21903853:21906040:21906136:21940601:21940697,	21906041	21906136	21906131	21906131	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-G3-A3CJ-01	DNAJC1	ENST00000376980.3	chr10	22094908:22095028:22171210:22171368:22193450:22193541,	22171211	22171368	22171214	22171214	Frame_Shift_Del	T	-	p.K325fs
LIHC	TCGA-G3-A3CJ-01	DNAJC1	ENST00000376980.3	chr10	22171210:22171368:22193450:22193541:22207707:22207801,	22193451	22193541	22193533	22193533	Frame_Shift_Del	C	-	p.G246fs
LIHC	TCGA-G3-A3CJ-01	DNAJC1	ENST00000376980.3	chr10	22208831:22208858:22217434:22217481:22217968:22218070,22209726:22209892:22217434:22217481:22217968:22218070,	22217435	22217481	22217469	22217469	Frame_Shift_Del	A	-	p.Y113fs
LIHC	TCGA-G3-A3CJ-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832383	24832383	Frame_Shift_Del	T	-	p.L1078fs
LIHC	TCGA-G3-A3CJ-01	ENKUR	ENST00000483339.2	chr10	25279391:25279538:25284574:25284798:25304788:25304889,	25284575	25284798	25284768	25284768	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-G3-A3CJ-01	ENKUR	ENST00000496261.2,ENST00000376363.1	chr10	25284574:25284798:25288329:25288475:25304788:25304889,	25288330	25288475	25288358	25288358	Frame_Shift_Del	T	-	p.K65fs
LIHC	TCGA-G3-A3CJ-01	ENKUR	ENST00000496261.2,ENST00000376363.1	chr10	25284574:25284798:25288329:25288475:25304788:25304889,	25288330	25288475	25288430	25288430	Frame_Shift_Del	T	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	MYO3A	ENST00000265944.5,ENST00000376302.1,ENST00000543632.1	chr10	26224716:26224759:26241022:26241207:26243802:26243937,	26241023	26241207	26241163	26241163	Frame_Shift_Del	A	-	p.K42fs
LIHC	TCGA-G3-A3CJ-01	APBB1IP	ENST00000376236.4	chr10	26800675:26800835:26802467:26802589:26822367:26822454,	26802468	26802589	26802473	26802473	Frame_Shift_Del	T	-	p.F234fs
LIHC	TCGA-G3-A3CJ-01	APBB1IP	ENST00000376236.4	chr10	26849033:26849132:26849658:26849773:26851254:26851358,	26849659	26849773	26849733	26849733	Frame_Shift_Del	G	-	p.L443fs
LIHC	TCGA-G3-A3CJ-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27303422:27303640:27306430:27306721:27311486:27311616,	27306431	27306721	27306612	27306612	Frame_Shift_Del	T	-	p.K1443fs
LIHC	TCGA-G3-A3CJ-01	YME1L1	ENST00000376016.3,ENST00000375972.3,ENST00000491542.2,ENST00000326799.3	chr10	27412475:27412628:27415624:27415715:27420787:27420870,	27415625	27415715	27415693	27415693	Frame_Shift_Del	A	-	p.L351fs
LIHC	TCGA-G3-A3CJ-01	MPP7	ENST00000375719.3,ENST00000540098.1,ENST00000337532.5,ENST00000375732.1,ENST00000496637.2,ENST00000481244.1	chr10	28438910:28438988:28491081:28491200:28527496:28527629,	28491082	28491200	28491102	28491102	Frame_Shift_Del	T	-	p.S46fs
LIHC	TCGA-G3-A3CJ-01	WAC	ENST00000354911.4,ENST00000530865.1,ENST00000428935.1,ENST00000347934.4	chr10	28821712:28821936:28822926:28822963:28824490:28824655,28822434:28822511:28822926:28822963:28824490:28824655,28822525:28822549:28822926:28822963:28824490:28824655,	28822927	28822963	28822941	28822941	Frame_Shift_Del	G	-	p.R19fs
LIHC	TCGA-G3-A3CJ-01	WAC	ENST00000526722.1	chr10	28821712:28821936:28822926:28823111:28824490:28824655,	28822927	28823111	28822941	28822941	Frame_Shift_Del	G	-	p.R19fs
LIHC	TCGA-G3-A3CJ-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4,ENST00000538146.1	chr10	29770512:29770657:29773584:29773760:29775013:29775159,	29773585	29773760	29773688	29773688	Frame_Shift_Del	T	-	p.I1618fs
LIHC	TCGA-G3-A3CJ-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4,ENST00000538146.1	chr10	29770512:29770657:29773584:29773760:29775013:29775159,	29773585	29773760	29773743	29773743	Frame_Shift_Del	A	-	p.F1599fs
LIHC	TCGA-G3-A3CJ-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29821546	29821546	Frame_Shift_Del	C	-	p.E584fs
LIHC	TCGA-G3-A3CJ-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29821677	29821677	Frame_Shift_Del	T	-	p.K540fs
LIHC	TCGA-G3-A3CJ-01	MAP3K8	ENST00000415139.1,ENST00000542547.1	chr10	30723172:30723307:30727844:30728203:30736710:30736878,	30727845	30728203	30727989	30727989	Frame_Shift_Del	T	-	p.V41fs
LIHC	TCGA-G3-A3CJ-01	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31138217	31138217	Frame_Shift_Del	T	-	p.T324fs
LIHC	TCGA-G3-A3CJ-01	ZEB1	ENST00000424869.1,ENST00000561061.1,ENST00000560196.1,ENST00000558655.1,ENST00000361642.5,ENST00000446923.2,ENST00000559476.1,ENST00000561304.1,ENST00000606671.1,ENST00000437844.2,ENST00000559496.1,ENST00000488625.2	chr10	31749965:31750166:31784704:31784767:31791275:31791334,	31784705	31784767	31784716	31784716	Frame_Shift_Del	G	-	p.G74fs
LIHC	TCGA-G3-A3CJ-01	ZEB1	ENST00000557827.1,ENST00000320985.10,ENST00000559858.1,ENST00000561212.1,ENST00000542879.1,ENST00000606161.1	chr10	31749965:31750166:31784707:31784767:31791275:31791334,	31784708	31784767	31784716	31784716	Frame_Shift_Del	G	-	p.G74fs
LIHC	TCGA-G3-A3CJ-01	PARD3	ENST00000374789.3,ENST00000466092.1,ENST00000545693.1,ENST00000545260.1,ENST00000350537.4,ENST00000374788.3,ENST00000374790.3	chr10	34558714:34558827:34573062:34573173:34606034:34606260,	34573063	34573173	34573121	34573121	Frame_Shift_Del	T	-	p.I1043fs
LIHC	TCGA-G3-A3CJ-01	CREM	ENST00000495960.1	chr10	35437328:35437419:35467799:35467914:35468061:35468204,	35467800	35467914	35467904	35467904	Frame_Shift_Del	C	-	p.P135fs
LIHC	TCGA-G3-A3CJ-01	CREM	ENST00000482633.1,ENST00000489388.1,ENST00000461968.1	chr10	35437328:35437419:35467816:35467914:35468061:35468204,35416089:35416121:35467816:35467914:35468061:35468204,	35467817	35467914	35467904	35467904	Frame_Shift_Del	C	-	p.P135fs
LIHC	TCGA-G3-A3CJ-01	CCNY	ENST00000339497.5,ENST00000374706.1,ENST00000265375.9,ENST00000492478.1,ENST00000374704.4	chr10	35814891:35814927:35818900:35818958:35819051:35819171,	35818901	35818958	35818930	35818930	Frame_Shift_Del	T	-	p.I144fs
LIHC	TCGA-G3-A3CJ-01	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000361713.1	chr10	37430645:37431218:37433922:37433984:37436297:37436385,	37433923	37433984	37433946	37433946	Frame_Shift_Del	A	-	p.K417fs
LIHC	TCGA-G3-A3CJ-01	RET	ENST00000340058.5,ENST00000355710.3	chr10	43613820:43613928:43614978:43615193:43615528:43615651,	43614979	43615193	43615166	43615166	Frame_Shift_Del	G	-	p.Q860fs
LIHC	TCGA-G3-A3CJ-01	RASGEF1A	ENST00000395809.1,ENST00000374459.1,ENST00000395810.1	chr10	43691540:43691716:43691923:43691996:43692423:43692547,	43691924	43691996	43691944	43691944	Frame_Shift_Del	T	-	p.K467fs
LIHC	TCGA-G3-A3CJ-01	ZNF485	ENST00000374435.3,ENST00000361807.3,ENST00000430885.1	chr10	44102444:44102522:44104061:44104188:44104702:44104798,	44104062	44104188	44104147	44104147	Frame_Shift_Del	G	-	p.R37fs
LIHC	TCGA-G3-A3CJ-01	ZNF485	ENST00000374435.3,ENST00000361807.3,ENST00000430885.1	chr10	44104061:44104188:44104702:44104798:44111738:44111843,	44104703	44104798	44104722	44104722	Frame_Shift_Del	A	-	p.P57fs
LIHC	TCGA-G3-A3CJ-01	ALOX5	ENST00000374391.2,ENST00000542434.1	chr10	45891302:45891384:45907638:45907761:45919488:45919595,	45907639	45907761	45907739	45907739	Frame_Shift_Del	T	-	p.F178fs
LIHC	TCGA-G3-A3CJ-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46120030:46120085:46121398:46122553:46135263:46135411,	46121399	46122553	46122159	46122159	Frame_Shift_Del	A	-	p.L297fs
LIHC	TCGA-G3-A3CJ-01	FRMPD2	ENST00000374201.3,ENST00000305531.3,ENST00000407470.4	chr10	49431165:49431313:49440157:49440332:49444524:49444596,	49440158	49440332	49440255	49440255	Frame_Shift_Del	T	-	p.K357fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP22	ENST00000417247.2,ENST00000249601.4,ENST00000417912.2,ENST00000374172.1,ENST00000435790.2,ENST00000374170.1,ENST00000460425.1	chr10	49654600:49654662:49658303:49659183:49661346:49661468,	49658304	49659183	49658886	49658886	Frame_Shift_Del	T	-	p.K429fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP22	ENST00000460425.1	chr10	49661399:49661468:49662130:49662204:49663044:49663177,49661399:49661468:49662130:49662204:49663096:49663177,	49662131	49662204	49662158	49662158	Frame_Shift_Del	T	-	p.N280fs
LIHC	TCGA-G3-A3CJ-01	SGMS1	ENST00000361781.2	chr10	52087037:52087082:52103251:52104105:52193235:52193316,	52103252	52104105	52103536	52103536	Frame_Shift_Del	T	-	p.K113fs
LIHC	TCGA-G3-A3CJ-01	A1CF	ENST00000373995.3,ENST00000395489.2	chr10	52603747:52603882:52610424:52610567:52619601:52619745,	52610425	52610567	52610473	52610473	Frame_Shift_Del	T	-	p.K10fs
LIHC	TCGA-G3-A3CJ-01	FAM13C	ENST00000422313.2,ENST00000442566.3,ENST00000513059.1,ENST00000468840.2,ENST00000277705.6,ENST00000373868.2,ENST00000435852.2,ENST00000373867.3	chr10	61022193:61022405:61023844:61023926:61028312:61028451,	61023845	61023926	61023869	61023869	Frame_Shift_Del	C	-	p.A251fs
LIHC	TCGA-G3-A3CJ-01	FAM13C	ENST00000422313.2,ENST00000442566.3,ENST00000513059.1,ENST00000468840.2,ENST00000277705.6,ENST00000373868.2,ENST00000435852.2,ENST00000373867.3	chr10	61022193:61022405:61023844:61023926:61028312:61028451,	61023845	61023926	61023871	61023871	Frame_Shift_Del	A	-	p.L250fs
LIHC	TCGA-G3-A3CJ-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61413975	61413975	Frame_Shift_Del	T	-	p.K271fs
LIHC	TCGA-G3-A3CJ-01	SLC16A9	ENST00000395348.3,ENST00000395347.1	chr10	61410522:61412708:61413432:61414347:61423984:61424080,	61413433	61414347	61414073	61414073	Frame_Shift_Del	T	-	p.K237fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000514197.1	chr10	61819149:61819188:61819455:61819791:61822868:61823012,	61819456	61819791	61819641	61819641	Frame_Shift_Del	G	-	p.P1621fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000355288.2,ENST00000503366.1,ENST00000373820.1,ENST00000373827.2	chr10	61819149:61819188:61819455:61819764:61822868:61823012,	61819456	61819764	61819641	61819641	Frame_Shift_Del	G	-	p.P1621fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000514197.1	chr10	61819149:61819188:61819455:61819791:61822868:61823012,	61819456	61819791	61819651	61819651	Frame_Shift_Del	G	-	p.L1618fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000355288.2,ENST00000503366.1,ENST00000373820.1,ENST00000373827.2	chr10	61819149:61819188:61819455:61819764:61822868:61823012,	61819456	61819764	61819651	61819651	Frame_Shift_Del	G	-	p.L1618fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829082	61829082	Frame_Shift_Del	T	-	p.T3853fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829691	61829691	Frame_Shift_Del	C	-	p.D3650fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830013	61830013	Frame_Shift_Del	A	-	p.F3542fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61830581	61830581	Frame_Shift_Del	T	-	p.K3353fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831290	61831290	Frame_Shift_Del	T	-	p.I3118fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832854	61832854	Frame_Shift_Del	A	-	p.F2595fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61834398	61834398	Frame_Shift_Del	T	-	p.M2081fs
LIHC	TCGA-G3-A3CJ-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61834418	61834418	Frame_Shift_Del	A	-	p.L2074fs
LIHC	TCGA-G3-A3CJ-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62637665:62637816:62645869:62645988:62647969:62648227,	62645870	62645988	62645897	62645897	Frame_Shift_Del	C	-	p.G516fs
LIHC	TCGA-G3-A3CJ-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62637665:62637816:62645869:62645988:62647969:62648227,	62645870	62645988	62645978	62645978	Frame_Shift_Del	A	-	p.F489fs
LIHC	TCGA-G3-A3CJ-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62647969:62648943:62652567:62652753:62670644:62670748,	62652568	62652753	62652728	62652728	Frame_Shift_Del	A	-	p.S108fs
LIHC	TCGA-G3-A3CJ-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000542921.1	chr10	64957170:64957323:64958272:64958487:64966354:64967485,64957170:64957323:64958272:64958487:64960235:64960437,	64958273	64958487	64958392	64958392	Frame_Shift_Del	T	-	p.N1791fs
LIHC	TCGA-G3-A3CJ-01	REEP3	ENST00000298249.4,ENST00000373758.4	chr10	65358932:65359043:65369946:65370094:65379414:65379560,	65369947	65370094	65370057	65370057	Frame_Shift_Del	A	-	p.A176fs
LIHC	TCGA-G3-A3CJ-01	DNAJC12	ENST00000483798.2,ENST00000225171.2	chr10	69556839:69556968:69565340:69565545:69571281:69571421,	69565341	69565545	69565516	69565516	Frame_Shift_Del	T	-	p.K109fs
LIHC	TCGA-G3-A3CJ-01	PBLD	ENST00000432941.1,ENST00000358769.2,ENST00000495025.2,ENST00000309049.4,ENST00000336578.1	chr10	70045104:70045167:70048239:70048418:70048687:70048720,	70048240	70048418	70048365	70048365	Frame_Shift_Del	T	-	p.N189fs
LIHC	TCGA-G3-A3CJ-01	PBLD	ENST00000277795.4	chr10	70056022:70056121:70056642:70056742:70066517:70066586,70051885:70051995:70056642:70056742:70066517:70066586,	70056643	70056742	70056688	70056688	Frame_Shift_Del	T	-	p.T47fs
LIHC	TCGA-G3-A3CJ-01	HNRNPH3	ENST00000265866.7,ENST00000354695.5,ENST00000486854.1,ENST00000467249.1	chr10	70096955:70097090:70097614:70097753:70098259:70098399,	70097615	70097753	70097724	70097724	Frame_Shift_Del	G	-	p.L74fs
LIHC	TCGA-G3-A3CJ-01	HNRNPH3	ENST00000469172.1,ENST00000265866.7,ENST00000481819.1,ENST00000441000.2,ENST00000354695.5,ENST00000491200.1	chr10	70101341:70101437:70101515:70101608:70101734:70101869,	70101516	70101608	70101556	70101556	Frame_Shift_Del	G	-	p.M304fs
LIHC	TCGA-G3-A3CJ-01	RUFY2	ENST00000388768.2,ENST00000466493.1,ENST00000602465.1	chr10	70137931:70138427:70139180:70139278:70140988:70141013,70136609:70136729:70139180:70139278:70140988:70141013,	70139181	70139278	70139212	70139212	Frame_Shift_Del	T	-	p.I427fs
LIHC	TCGA-G3-A3CJ-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000399200.2,ENST00000466493.1,ENST00000602465.1	chr10	70139249:70139278:70140988:70141156:70143554:70143671,	70140989	70141156	70141022	70141022	Frame_Shift_Del	T	-	p.K393fs
LIHC	TCGA-G3-A3CJ-01	DNA2	ENST00000399179.2,ENST00000399180.2,ENST00000551118.2,ENST00000358410.3	chr10	70192150:70192267:70196767:70196998:70202673:70202763,	70196768	70196998	70196807	70196807	Frame_Shift_Del	T	-	p.K622fs
LIHC	TCGA-G3-A3CJ-01	DNA2	ENST00000399179.2,ENST00000399180.2,ENST00000551118.2,ENST00000358410.3	chr10	70196767:70196998:70202673:70202868:70204677:70204840,	70202674	70202868	70202701	70202701	Frame_Shift_Del	T	-	p.N549fs
LIHC	TCGA-G3-A3CJ-01	CCAR1	ENST00000536012.1,ENST00000543719.1,ENST00000535016.1,ENST00000483264.1,ENST00000539539.1,ENST00000265872.6,ENST00000543229.1,ENST00000543225.1	chr10	70515232:70515293:70516029:70516240:70517050:70517055,	70516030	70516240	70516118	70516118	Frame_Shift_Del	T	-	p.F573fs
LIHC	TCGA-G3-A3CJ-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644259	70644259	Frame_Shift_Del	C	-	p.A236fs
LIHC	TCGA-G3-A3CJ-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645678	70645678	Frame_Shift_Del	A	-	p.E709fs
LIHC	TCGA-G3-A3CJ-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70646076	70646076	Frame_Shift_Del	A	-	p.K842fs
LIHC	TCGA-G3-A3CJ-01	DDX21	ENST00000354185.4	chr10	70729956:70730106:70731646:70731808:70733300:70733420,	70731647	70731808	70731721	70731721	Frame_Shift_Del	T	-	p.S487fs
LIHC	TCGA-G3-A3CJ-01	DDX21	ENST00000354185.4	chr10	70729956:70730106:70731646:70731808:70733300:70733420,	70731647	70731808	70731769	70731769	Frame_Shift_Del	C	-	p.I503fs
LIHC	TCGA-G3-A3CJ-01	DDX21	ENST00000354185.4	chr10	70738597:70738732:70741292:70741337:70742298:70742383,	70741293	70741337	70741297	70741297	Frame_Shift_Del	T	-	p.V681fs
LIHC	TCGA-G3-A3CJ-01	HKDC1	ENST00000395086.2,ENST00000354624.5	chr10	71002937:71003121:71005834:71005990:71007115:71007349,	71005835	71005990	71005985	71005985	Frame_Shift_Del	G	-	p.M342fs
LIHC	TCGA-G3-A3CJ-01	HKDC1	ENST00000395086.2,ENST00000354624.5	chr10	71017082:71017182:71018531:71018715:71020894:71021050,	71018532	71018715	71018587	71018587	Frame_Shift_Del	G	-	p.E696fs
LIHC	TCGA-G3-A3CJ-01	HK1	ENST00000494253.1,ENST00000436817.1,ENST00000360289.2,ENST00000404387.2,ENST00000448642.2,ENST00000298649.3,ENST00000359426.6,ENST00000493591.1	chr10	71119652:71119801:71124538:71124658:71128291:71128387,	71124539	71124658	71124647	71124647	Frame_Shift_Del	A	-	p.K197fs
LIHC	TCGA-G3-A3CJ-01	TACR2	ENST00000373306.4	chr10	71168677:71168831:71174700:71174895:71175687:71176623,	71174701	71174895	71174716	71174716	Frame_Shift_Del	C	-	p.G191fs
LIHC	TCGA-G3-A3CJ-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000520133.1,ENST00000398972.3	chr10	71678817:71678844:71681637:71681691:71682463:71682550,	71681638	71681691	71681646	71681646	Frame_Shift_Del	G	-	p.K355fs
LIHC	TCGA-G3-A3CJ-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000520133.1,ENST00000398972.3	chr10	71678817:71678844:71681637:71681691:71682463:71682550,	71681638	71681691	71681682	71681682	Frame_Shift_Del	G	-	p.L367fs
LIHC	TCGA-G3-A3CJ-01	SAR1A	ENST00000373241.4	chr10	71921400:71921494:71921613:71921687:71930168:71930228,	71921614	71921687	71921657	71921657	Frame_Shift_Del	A	-	p.F5fs
LIHC	TCGA-G3-A3CJ-01	LRRC20	ENST00000355790.4,ENST00000446961.1,ENST00000373224.1	chr10	72061140:72061264:72100308:72100458:72136207:72136352,72083618:72083786:72100308:72100458:72136207:72136352,	72100309	72100458	72100401	72100401	Frame_Shift_Del	T	-	p.N47fs
LIHC	TCGA-G3-A3CJ-01	SGPL1	ENST00000373202.3	chr10	72629548:72629654:72630804:72630903:72631593:72631743,	72630805	72630903	72630888	72630888	Frame_Shift_Del	C	-	p.V298fs
LIHC	TCGA-G3-A3CJ-01	SGPL1	ENST00000373202.3	chr10	72631593:72631743:72633107:72633346:72635158:72635305,	72633108	72633346	72633122	72633122	Frame_Shift_Del	A	-	p.P358fs
LIHC	TCGA-G3-A3CJ-01	SLC29A3	ENST00000373189.5	chr10	73103965:73104048:73111318:73111545:73115837:73116000,	73111319	73111545	73111408	73111408	Frame_Shift_Del	C	-	p.S159fs
LIHC	TCGA-G3-A3CJ-01	CDH23	ENST00000224721.6,ENST00000466757.3,ENST00000299366.7,ENST00000442677.2	chr10	73439143:73439249:73442201:73442329:73447403:73447476,	73442202	73442329	73442287	73442287	Frame_Shift_Del	C	-	p.N653fs
LIHC	TCGA-G3-A3CJ-01	PSAP	ENST00000394934.1,ENST00000394936.3	chr10	73578787:73578868:73579221:73579379:73579470:73579657,	73579222	73579379	73579352	73579352	Frame_Shift_Del	C	-	p.G407fs
LIHC	TCGA-G3-A3CJ-01	ANAPC16	ENST00000299381.4	chr10	73975805:73975896:73983645:73983814:73990123:73990188,	73983646	73983814	73983776	73983776	Frame_Shift_Del	T	-	p.L35fs
LIHC	TCGA-G3-A3CJ-01	DNAJB12	ENST00000394903.2,ENST00000444643.2	chr10	74103123:74103269:74104707:74104885:74114522:74114907,	74104708	74104885	74104834	74104834	Frame_Shift_Del	G	-	p.P97fs
LIHC	TCGA-G3-A3CJ-01	P4HA1	ENST00000394890.2,ENST00000464310.2,ENST00000373008.2,ENST00000307116.2,ENST00000263556.3,ENST00000412021.2	chr10	74770726:74770795:74773981:74774047:74776603:74776619,	74773982	74774047	74774015	74774015	Frame_Shift_Del	C	-	p.G445fs
LIHC	TCGA-G3-A3CJ-01	P4HA1	ENST00000394890.2,ENST00000373008.2,ENST00000307116.2,ENST00000440381.1,ENST00000263556.3,ENST00000412021.2	chr10	74813222:74813348:74828603:74828741:74831786:74831938,	74828604	74828741	74828679	74828679	Frame_Shift_Del	C	-	p.A131fs
LIHC	TCGA-G3-A3CJ-01	ECD	ENST00000430082.2,ENST00000454759.2,ENST00000372979.4,ENST00000484976.2	chr10	74896461:74896676:74897760:74897828:74899066:74899253,	74897761	74897828	74897786	74897786	Frame_Shift_Del	A	-	p.F488fs
LIHC	TCGA-G3-A3CJ-01	ECD	ENST00000453402.1,ENST00000430082.2,ENST00000454759.2,ENST00000372979.4,ENST00000413026.1	chr10	74914067:74914206:74916032:74916211:74916325:74916335,	74916033	74916211	74916082	74916082	Frame_Shift_Del	T	-	p.I181fs
LIHC	TCGA-G3-A3CJ-01	ECD	ENST00000430082.2,ENST00000454759.2,ENST00000372979.4,ENST00000413026.1	chr10	74920203:74920309:74923490:74923708:74927623:74927706,	74923491	74923708	74923686	74923686	Frame_Shift_Del	T	-	p.T4fs
LIHC	TCGA-G3-A3CJ-01	PPP3CB	ENST00000545874.1,ENST00000495897.1,ENST00000394829.2,ENST00000394828.2,ENST00000342558.3,ENST00000394822.2,ENST00000360663.5	chr10	75227310:75227436:75230444:75230539:75230644:75230722,	75230445	75230539	75230481	75230481	Frame_Shift_Del	A	-	p.S316fs
LIHC	TCGA-G3-A3CJ-01	USP54	ENST00000466048.2,ENST00000339859.4,ENST00000408019.1,ENST00000428547.1	chr10	75260412:75260596:75264607:75264748:75265080:75265184,75260412:75260596:75264607:75264748:75265065:75265184,	75264608	75264748	75264684	75264684	Frame_Shift_Del	A	-	p.L1412fs
LIHC	TCGA-G3-A3CJ-01	USP54	ENST00000339859.4,ENST00000394811.2,ENST00000408019.1,ENST00000428547.1	chr10	75277271:75277505:75279554:75279750:75283340:75283508,75277271:75277505:75279554:75279750:75280665:75280785,	75279555	75279750	75279575	75279575	Frame_Shift_Del	C	-	p.G886fs
LIHC	TCGA-G3-A3CJ-01	USP54	ENST00000319786.7,ENST00000413442.1,ENST00000498143.1,ENST00000461520.1,ENST00000339859.4,ENST00000394811.2,ENST00000408019.1	chr10	75302803:75302889:75305295:75305430:75331178:75331271,	75305296	75305430	75305395	75305395	Frame_Shift_Del	T	-	p.K92fs
LIHC	TCGA-G3-A3CJ-01	SEC24C	ENST00000477008.1	chr10	75506624:75506762:75510865:75511001:75519379:75519552,75506624:75506762:75510865:75511001:75511474:75511860,	75510866	75511001	75510891	75510891	Frame_Shift_Del	G	-	p.S66fs
LIHC	TCGA-G3-A3CJ-01	SEC24C	ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75506624:75506762:75519379:75519552:75519775:75520144,75510865:75511001:75519379:75519552:75519775:75519823,	75519380	75519552	75519406	75519406	Frame_Shift_Del	C	-	p.S112fs
LIHC	TCGA-G3-A3CJ-01	ZSWIM8	ENST00000604754.1,ENST00000603114.1,ENST00000603187.1,ENST00000398706.2,ENST00000412198.1,ENST00000604524.1,ENST00000605216.1,ENST00000604729.1	chr10	75557134:75557363:75557538:75557828:75557987:75558211,	75557539	75557828	75557648	75557648	Frame_Shift_Del	G	-	p.G1259fs
LIHC	TCGA-G3-A3CJ-01	ZSWIM8	ENST00000604754.1,ENST00000603114.1,ENST00000603187.1,ENST00000398706.2,ENST00000412198.1,ENST00000604524.1,ENST00000605216.1,ENST00000604729.1	chr10	75557134:75557363:75557538:75557828:75557987:75558211,	75557539	75557828	75557693	75557693	Frame_Shift_Del	G	-	p.G1274fs
LIHC	TCGA-G3-A3CJ-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R184fs
LIHC	TCGA-G3-A3CJ-01	ADK	ENST00000541550.1,ENST00000286621.2,ENST00000372734.3	chr10	76158228:76158337:76285013:76285184:76349039:76349075,	76285014	76285184	76285049	76285049	Frame_Shift_Del	A	-	p.L180fs
LIHC	TCGA-G3-A3CJ-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76602357:76603236:76719727:76719836:76729417:76729533,	76719728	76719836	76719766	76719766	Frame_Shift_Del	G	-	p.L220fs
LIHC	TCGA-G3-A3CJ-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76729417:76729533:76729777:76729859:76732264:76732397,	76729778	76729859	76729788	76729788	Frame_Shift_Del	T	-	p.L286fs
LIHC	TCGA-G3-A3CJ-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76729777:76729859:76732264:76732397:76735156:76735212,	76732265	76732397	76732302	76732302	Frame_Shift_Del	G	-	p.K322fs
LIHC	TCGA-G3-A3CJ-01	KAT6B	ENST00000287239.4,ENST00000372714.1,ENST00000372711.1,ENST00000372724.1,ENST00000372725.1	chr10	76729777:76729859:76732264:76732397:76735156:76735212,	76732265	76732397	76732372	76732372	Frame_Shift_Del	A	-	p.K346fs
LIHC	TCGA-G3-A3CJ-01	DUSP13	ENST00000308475.6	chr10	76857500:76857643:76861624:76861719:76868766:76868891,	76861625	76861719	76861664	76861664	Frame_Shift_Del	G	-	p.P116fs
LIHC	TCGA-G3-A3CJ-01	DUSP13	ENST00000494588.2	chr10	76863750:76863855:76867749:76868041:76868766:76868891,	76867750	76868041	76867840	76867840	Frame_Shift_Del	C	-	p.V93fs
LIHC	TCGA-G3-A3CJ-01	DUSP13	ENST00000607009.1	chr10	76863750:76863855:76867749:76867967:76868766:76868891,76865418:76865626:76867749:76867967:76868766:76868891,76857500:76857643:76867749:76867967:76868766:76868891,	76867750	76867967	76867840	76867840	Frame_Shift_Del	C	-	p.V93fs
LIHC	TCGA-G3-A3CJ-01	KCNMA1	ENST00000372443.1	chr10	78669723:78669854:78673814:78673895:78674693:78674807,	78673815	78673895	78673850	78673850	Frame_Shift_Del	T	-	p.N963fs
LIHC	TCGA-G3-A3CJ-01	POLR3A	ENST00000372371.3	chr10	79778919:79779023:79781303:79781440:79781617:79781780,	79781304	79781440	79781322	79781322	Frame_Shift_Del	A	-	p.I389fs
LIHC	TCGA-G3-A3CJ-01	ZMIZ1	ENST00000478357.1	chr10	81050715:81050933:81051914:81052113:81053137:81053410,81050715:81050933:81051914:81052113:81053119:81056692,	81051915	81052113	81051935	81051935	Frame_Shift_Del	C	-	p.A260fs
LIHC	TCGA-G3-A3CJ-01	TSPAN14	ENST00000372164.3	chr10	82264483:82264534:82266983:82267130:82269056:82269227,82264483:82264534:82266983:82267130:82271899:82272025,82248972:82249070:82266983:82267130:82269056:82269227,	82266984	82267130	82267076	82267076	Frame_Shift_Del	G	-	p.L75fs
LIHC	TCGA-G3-A3CJ-01	TSPAN14	ENST00000372157.2	chr10	82264483:82264534:82266954:82267130:82269056:82269227,	82266955	82267130	82267076	82267076	Frame_Shift_Del	G	-	p.L75fs
LIHC	TCGA-G3-A3CJ-01	OPN4	ENST00000372071.2,ENST00000443292.1,ENST00000241891.5	chr10	88421037:88421145:88422008:88422189:88423415:88423559,	88422009	88422189	88422081	88422081	Frame_Shift_Del	C	-	p.Y393fs
LIHC	TCGA-G3-A3CJ-01	LDB3	ENST00000372056.4,ENST00000429277.2	chr10	88441192:88441560:88446825:88447029:88451652:88451822,	88446826	88447029	88446858	88446858	Frame_Shift_Del	C	-	p.A241fs
LIHC	TCGA-G3-A3CJ-01	SNCG	ENST00000348795.4	chr10	88719389:88719431:88719705:88719885:88722360:88722394,	88719706	88719885	88719727	88719727	Frame_Shift_Del	G	-	p.W62fs
LIHC	TCGA-G3-A3CJ-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88820709:88820809:88822412:88822592:88827819:88827914,	88822413	88822592	88822543	88822543	Frame_Shift_Del	C	-	p.G264fs
LIHC	TCGA-G3-A3CJ-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88827819:88827914:88834307:88834371:88835724:88835780,	88834308	88834371	88834312	88834312	Frame_Shift_Del	A	-	p.F214fs
LIHC	TCGA-G3-A3CJ-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88827819:88827914:88834307:88834371:88835724:88835780,	88834308	88834371	88834319	88834319	Frame_Shift_Del	T	-	p.K212fs
LIHC	TCGA-G3-A3CJ-01	PAPSS2	ENST00000361175.4,ENST00000427144.2	chr10	89475488:89475600:89487040:89487246:89500991:89501127,	89487041	89487246	89487090	89487090	Frame_Shift_Del	G	-	p.E305fs
LIHC	TCGA-G3-A3CJ-01	LIPF	ENST00000238983.4,ENST00000394375.3,ENST00000496797.1,ENST00000355843.2,ENST00000608620.1	chr10	90435342:90435414:90435965:90436037:90438201:90438271,	90435966	90436037	90436000	90436000	Frame_Shift_Del	G	-	p.W318fs
LIHC	TCGA-G3-A3CJ-01	STAMBPL1	ENST00000371927.3,ENST00000371926.3,ENST00000371922.1,ENST00000371924.1	chr10	90674290:90674415:90676436:90676574:90681039:90681152,	90676437	90676574	90676459	90676459	Frame_Shift_Del	C	-	p.T309fs
LIHC	TCGA-G3-A3CJ-01	ACTA2	ENST00000458208.1,ENST00000415557.1,ENST00000480297.1,ENST00000458159.1,ENST00000224784.6	chr10	90703553:90703664:90707014:90707143:90708558:90708710,	90707015	90707143	90707117	90707117	Frame_Shift_Del	T	-	p.K52fs
LIHC	TCGA-G3-A3CJ-01	PANK1	ENST00000307534.4	chr10	91359008:91359262:91371452:91371805:91404356:91405215,	91371453	91371805	91371653	91371653	Frame_Shift_Del	T	-	p.T286fs
LIHC	TCGA-G3-A3CJ-01	KIF20B	ENST00000416354.1,ENST00000394289.2,ENST00000371728.3	chr10	91461373:91461437:91465050:91465198:91468923:91469010,	91465051	91465198	91465075	91465075	Frame_Shift_Del	G	-	p.E8fs
LIHC	TCGA-G3-A3CJ-01	KIF20B	ENST00000416354.1,ENST00000260753.4,ENST00000394289.2,ENST00000371728.3	chr10	91477332:91477479:91478466:91478629:91479175:91479463,	91478467	91478629	91478521	91478521	Frame_Shift_Del	T	-	p.S442fs
LIHC	TCGA-G3-A3CJ-01	BTAF1	ENST00000265990.6	chr10	93695413:93695537:93699708:93699823:93702178:93702325,	93699709	93699823	93699781	93699781	Frame_Shift_Del	A	-	p.K71fs
LIHC	TCGA-G3-A3CJ-01	BTAF1	ENST00000265990.6	chr10	93711159:93711323:93713493:93713630:93716284:93716414,	93713494	93713630	93713603	93713603	Frame_Shift_Del	G	-	p.R225fs
LIHC	TCGA-G3-A3CJ-01	IDE	ENST00000265986.6,ENST00000371581.5	chr10	94235728:94235751:94239033:94239178:94243011:94243094,	94239034	94239178	94239053	94239053	Frame_Shift_Del	T	-	p.N622fs
LIHC	TCGA-G3-A3CJ-01	MYOF	ENST00000359263.4,ENST00000371502.4,ENST00000371501.4	chr10	95148786:95148911:95152673:95152712:95155898:95155981,	95152674	95152712	95152697	95152697	Frame_Shift_Del	C	-	p.G478fs
LIHC	TCGA-G3-A3CJ-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	95995671:95995877:96005702:96006378:96012072:96012255,	96005703	96006378	96006268	96006268	Frame_Shift_Del	A	-	p.K996fs
LIHC	TCGA-G3-A3CJ-01	TBC1D12	ENST00000225235.4	chr10	96259977:96260084:96267023:96267104:96269847:96269936,	96267024	96267104	96267057	96267057	Frame_Shift_Del	A	-	p.E518fs
LIHC	TCGA-G3-A3CJ-01	TBC1D12	ENST00000225235.4	chr10	96271339:96271411:96281711:96281840:96282100:96282210,	96281712	96281840	96281817	96281817	Frame_Shift_Del	T	-	p.F624fs
LIHC	TCGA-G3-A3CJ-01	TBC1D12	ENST00000225235.4	chr10	96282100:96282210:96290958:96291217:96292784:96293054,	96290959	96291217	96291047	96291047	Frame_Shift_Del	T	-	p.F697fs
LIHC	TCGA-G3-A3CJ-01	TBC1D12	ENST00000225235.4	chr10	96282100:96282210:96290958:96291217:96292784:96293054,	96290959	96291217	96291180	96291180	Frame_Shift_Del	C	-	p.A741fs
LIHC	TCGA-G3-A3CJ-01	SORBS1	ENST00000371239.1,ENST00000353505.5,ENST00000361941.3,ENST00000347291.4,ENST00000393949.1,ENST00000371245.3,ENST00000607232.1,ENST00000371249.2,ENST00000371246.2,ENST00000277982.5,ENST00000371247.2,ENST00000354106.3,ENST00000371227.4,ENST00000306402.6,ENST00000371241.1	chr10	97074815:97074883:97078076:97078189:97081719:97081778,	97078077	97078189	97078099	97078099	Frame_Shift_Del	T	-	p.K1263fs
LIHC	TCGA-G3-A3CJ-01	SORBS1	ENST00000361941.3,ENST00000371247.2	chr10	97082502:97082562:97096277:97097051:97098889:97099084,97081719:97081778:97096277:97097051:97098889:97099084,	97096278	97097051	97096736	97096736	Frame_Shift_Del	T	-	p.T1061fs
LIHC	TCGA-G3-A3CJ-01	SORBS1	ENST00000393949.1,ENST00000354106.3	chr10	97154367:97154430:97154757:97154832:97156976:97157040,97146747:97146876:97154757:97154832:97156976:97157040,97143994:97144042:97154757:97154832:97156976:97157040,	97154758	97154832	97154767	97154767	Frame_Shift_Del	T	-	p.T430fs
LIHC	TCGA-G3-A3CJ-01	SORBS1	ENST00000361941.3,ENST00000393949.1,ENST00000371249.2,ENST00000371246.2,ENST00000277982.5,ENST00000371247.2,ENST00000354106.3,ENST00000371227.4	chr10	97170389:97170534:97174250:97174619:97175225:97175452,97170389:97170534:97174250:97174619:97181717:97181830,	97174251	97174619	97174491	97174491	Frame_Shift_Del	G	-	p.P190fs
LIHC	TCGA-G3-A3CJ-01	ENTPD1	ENST00000483213.1	chr10	97599447:97599565:97602100:97602251:97604232:97604310,97599447:97599565:97602100:97602251:97604311:97604392,	97602101	97602251	97602176	97602176	Frame_Shift_Del	G	-	p.R125fs
LIHC	TCGA-G3-A3CJ-01	DNTT	ENST00000371174.2,ENST00000419175.1	chr10	98079018:98079147:98080374:98080545:98082413:98082485,	98080375	98080545	98080397	98080397	Frame_Shift_Del	A	-	p.E177fs
LIHC	TCGA-G3-A3CJ-01	TLL2	ENST00000469598.1	chr10	98205847:98205925:98240105:98240216:98273267:98273668,	98240106	98240216	98240124	98240124	Frame_Shift_Del	C	-	p.A90fs
LIHC	TCGA-G3-A3CJ-01	EXOSC1	ENST00000370884.5	chr10	99200927:99201016:99202993:99203068:99205488:99205590,99200927:99201016:99202993:99203068:99205209:99205363,99197456:99197507:99202993:99203068:99205488:99205590,	99202994	99203068	99203041	99203041	Frame_Shift_Del	T	-	p.T59fs
LIHC	TCGA-G3-A3CJ-01	MMS19	ENST00000327277.7,ENST00000441194.1,ENST00000438925.2,ENST00000355839.6,ENST00000370782.2,ENST00000483626.1,ENST00000415383.1,ENST00000327238.10	chr10	99229885:99229960:99230531:99230618:99236439:99236501,	99230532	99230618	99230614	99230614	Frame_Shift_Del	G	-	p.P230fs
LIHC	TCGA-G3-A3CJ-01	MMS19	ENST00000448660.1	chr10	99238060:99238146:99240651:99240799:99243859:99243908,	99240652	99240799	99240746	99240746	Frame_Shift_Del	A	-	p.L72fs
LIHC	TCGA-G3-A3CJ-01	MMS19	ENST00000327277.7,ENST00000438925.2,ENST00000477575.1,ENST00000355839.6,ENST00000437002.1,ENST00000370782.2,ENST00000483626.1,ENST00000439048.1,ENST00000327238.10	chr10	99238060:99238146:99240698:99240799:99243859:99243908,	99240699	99240799	99240746	99240746	Frame_Shift_Del	A	-	p.L72fs
LIHC	TCGA-G3-A3CJ-01	ANKRD2	ENST00000298808.5,ENST00000455090.1	chr10	99341072:99341171:99342360:99342459:99343332:99343616,	99342361	99342459	99342364	99342364	Frame_Shift_Del	G	-	p.G280fs
LIHC	TCGA-G3-A3CJ-01	MORN4	ENST00000307450.6,ENST00000335628.3	chr10	99374311:99376168:99376434:99376544:99376964:99377079,	99376435	99376544	99376455	99376455	Frame_Shift_Del	T	-	p.N149fs
LIHC	TCGA-G3-A3CJ-01	MORN4	ENST00000307450.6,ENST00000335628.3	chr10	99374311:99376168:99376434:99376544:99376964:99377079,	99376435	99376544	99376475	99376475	Frame_Shift_Del	G	-	p.T142fs
LIHC	TCGA-G3-A3CJ-01	GOLGA7B	ENST00000370602.1	chr10	99619214:99619340:99623686:99623839:99623924:99624026,	99623687	99623839	99623756	99623756	Frame_Shift_Del	G	-	p.G71fs
LIHC	TCGA-G3-A3CJ-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968602	99968602	Frame_Shift_Del	A	-	p.E244fs
LIHC	TCGA-G3-A3CJ-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968643	99968643	Frame_Shift_Del	A	-	p.N258fs
LIHC	TCGA-G3-A3CJ-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968720	99968720	Frame_Shift_Del	T	-	p.D283fs
LIHC	TCGA-G3-A3CJ-01	LOXL4	ENST00000260702.3	chr10	100015333:100015496:100016536:100016704:100017406:100017561,	100016537	100016704	100016624	100016624	Frame_Shift_Del	C	-	p.G447fs
LIHC	TCGA-G3-A3CJ-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000359632.3	chr10	100185297:100185477:100185574:100185742:100186971:100187021,	100185575	100185742	100185686	100185686	Frame_Shift_Del	G	-	p.P348fs
LIHC	TCGA-G3-A3CJ-01	CNNM1	ENST00000370528.3,ENST00000356713.4,ENST00000446890.1	chr10	101124711:101124759:101136811:101136975:101147576:101147760,	101136812	101136975	101136821	101136821	Frame_Shift_Del	C	-	p.S729fs
LIHC	TCGA-G3-A3CJ-01	CNNM1	ENST00000370528.3	chr10	101147908:101148058:101150062:101150164:101151193:101151296,101147576:101147760:101150062:101150164:101151193:101151296,	101150063	101150164	101150124	101150124	Frame_Shift_Del	T	-	p.D912fs
LIHC	TCGA-G3-A3CJ-01	GOT1	ENST00000489349.1,ENST00000543866.1,ENST00000370508.5	chr10	101157221:101157443:101162336:101162479:101163225:101163391,	101162337	101162479	101162396	101162396	Frame_Shift_Del	G	-	p.P348fs
LIHC	TCGA-G3-A3CJ-01	GOT1	ENST00000489349.1,ENST00000543866.1,ENST00000370508.5	chr10	101157221:101157443:101162336:101162479:101163225:101163391,	101162337	101162479	101162400	101162400	Frame_Shift_Del	T	-	p.T347fs
LIHC	TCGA-G3-A3CJ-01	ENTPD7	ENST00000370489.4	chr10	101455712:101455879:101458290:101458615:101460729:101460815,	101458291	101458615	101458354	101458354	Frame_Shift_Del	G	-	p.V358fs
LIHC	TCGA-G3-A3CJ-01	ERLIN1	ENST00000407654.3,ENST00000421367.2,ENST00000370408.2	chr10	101915901:101915991:101923760:101923852:101927104:101927163,	101923761	101923852	101923795	101923795	Frame_Shift_Del	T	-	p.K207fs
LIHC	TCGA-G3-A3CJ-01	KAZALD1	ENST00000477267.1	chr10	102824262:102824405:102824582:102824700:102827004:102827647,	102824583	102824700	102824605	102824605	Frame_Shift_Del	C	-	p.I281fs
LIHC	TCGA-G3-A3CJ-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103285769:103285956:103290993:103291090:103292051:103292189,	103290994	103291090	103291048	103291048	Frame_Shift_Del	T	-	p.S266fs
LIHC	TCGA-G3-A3CJ-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310472	103310472	Frame_Shift_Del	T	-	p.V558fs
LIHC	TCGA-G3-A3CJ-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906604	103906604	Frame_Shift_Del	C	-	p.G1285fs
LIHC	TCGA-G3-A3CJ-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906771	103906771	Frame_Shift_Del	C	-	p.A1341fs
LIHC	TCGA-G3-A3CJ-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906779	103906779	Frame_Shift_Del	C	-	p.P1345fs
LIHC	TCGA-G3-A3CJ-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000370007.5,ENST00000605788.1,ENST00000405356.1,ENST00000488254.2,ENST00000464969.2	chr10	103919652:103919781:103919989:103920100:103920208:103920316,	103919990	103920100	103920016	103920016	Frame_Shift_Del	C	-	p.P350fs
LIHC	TCGA-G3-A3CJ-01	GBF1	ENST00000369983.3	chr10	104127234:104127317:104127974:104128211:104128495:104128589,	104127975	104128211	104128131	104128131	Frame_Shift_Del	C	-	p.G932fs
LIHC	TCGA-G3-A3CJ-01	PDCD11	ENST00000369797.3	chr10	105166365:105166547:105169455:105169563:105172872:105173079,	105169456	105169563	105169479	105169479	Frame_Shift_Del	A	-	p.L298fs
LIHC	TCGA-G3-A3CJ-01	COL17A1	ENST00000369733.3,ENST00000353479.5	chr10	105815539:105815761:105816732:105816930:105817903:105817945,	105816733	105816930	105816915	105816915	Frame_Shift_Del	C	-	p.G428fs
LIHC	TCGA-G3-A3CJ-01	COL17A1	ENST00000369733.3,ENST00000393211.3,ENST00000353479.5	chr10	105821162:105821231:105822015:105822087:105823504:105823576,	105822016	105822087	105822059	105822059	Frame_Shift_Del	G	-	p.P289fs
LIHC	TCGA-G3-A3CJ-01	COL17A1	ENST00000369733.3,ENST00000483876.1,ENST00000393211.3,ENST00000353479.5	chr10	105833941:105833989:105836058:105836187:105837179:105837281,	105836059	105836187	105836086	105836086	Frame_Shift_Del	T	-	p.T102fs
LIHC	TCGA-G3-A3CJ-01	GSTO1	ENST00000369710.4,ENST00000369713.5	chr10	106013951:106014257:106014920:106015029:106019333:106019556,106014492:106014720:106014920:106015029:106019333:106019556,	106014921	106015029	106014949	106014949	Frame_Shift_Del	G	-	p.E21fs
LIHC	TCGA-G3-A3CJ-01	GSTO2	ENST00000338595.2,ENST00000401888.2,ENST00000450629.2	chr10	106034677:106034707:106034983:106035092:106037651:106037776,	106034984	106035092	106034992	106034992	Frame_Shift_Del	C	-	p.P16fs
LIHC	TCGA-G3-A3CJ-01	XPNPEP1	ENST00000494564.1,ENST00000502935.1,ENST00000369680.4,ENST00000369683.1	chr10	111633124:111633185:111635285:111635357:111637547:111637625,	111635286	111635357	111635309	111635309	Frame_Shift_Del	A	-	p.L413fs
LIHC	TCGA-G3-A3CJ-01	ADD3	ENST00000360162.3,ENST00000356080.4,ENST00000277900.8,ENST00000468251.1,ENST00000484622.1,ENST00000468345.1,ENST00000496517.1,ENST00000497125.1	chr10	111872534:111872673:111876016:111876168:111877099:111877117,	111876017	111876168	111876140	111876140	Frame_Shift_Del	G	-	p.W153fs
LIHC	TCGA-G3-A3CJ-01	ADD3	ENST00000360162.3,ENST00000356080.4,ENST00000277900.8	chr10	111879223:111879322:111881867:111882050:111883774:111883901,	111881868	111882050	111881992	111881992	Frame_Shift_Del	A	-	p.Q362fs
LIHC	TCGA-G3-A3CJ-01	SMC3	ENST00000361804.4	chr10	112341680:112341856:112342319:112342400:112343141:112343306,	112342320	112342400	112342348	112342348	Frame_Shift_Del	A	-	p.E251fs
LIHC	TCGA-G3-A3CJ-01	PDCD4	ENST00000498367.1,ENST00000280154.7,ENST00000462577.1,ENST00000393104.2	chr10	112654169:112654280:112655705:112655845:112657785:112657880,	112655706	112655845	112655795	112655795	Frame_Shift_Del	T	-	p.C422fs
LIHC	TCGA-G3-A3CJ-01	ACSL5	ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000354655.4	chr10	114168179:114168279:114169264:114169443:114170220:114170253,	114169265	114169443	114169347	114169347	Frame_Shift_Del	C	-	p.S205fs
LIHC	TCGA-G3-A3CJ-01	ACSL5	ENST00000369410.3,ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000467340.1,ENST00000356116.1,ENST00000354655.4,ENST00000495539.1	chr10	114172930:114173065:114176645:114176780:114177603:114177696,	114176646	114176780	114176771	114176771	Frame_Shift_Del	A	-	p.A403fs
LIHC	TCGA-G3-A3CJ-01	TCF7L2	ENST00000369395.1,ENST00000355717.4,ENST00000542695.1,ENST00000369397.4,ENST00000352065.5	chr10	114710965:114711032:114711241:114711366:114724314:114724383,114710965:114711032:114711241:114711366:114799783:114799885,	114711242	114711366	114711262	114711262	Frame_Shift_Del	G	-	p.G93fs
LIHC	TCGA-G3-A3CJ-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115357727:115357832:115364367:115364679:115365520:115365628,	115364368	115364679	115364641	115364641	Frame_Shift_Del	T	-	p.K1326fs
LIHC	TCGA-G3-A3CJ-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115987018	115987018	Frame_Shift_Del	A	-	p.A1121fs
LIHC	TCGA-G3-A3CJ-01	ATRNL1	ENST00000423111.2,ENST00000424738.1,ENST00000355044.3	chr10	117228681:117228839:117278772:117278834:117308967:117309037,	117278773	117278834	117278815	117278815	Frame_Shift_Del	T	-	p.F1234fs
LIHC	TCGA-G3-A3CJ-01	PNLIP	ENST00000369221.2	chr10	118307871:118307994:118310609:118310744:118313238:118313350,	118310610	118310744	118310726	118310726	Frame_Shift_Del	T	-	p.Y147fs
LIHC	TCGA-G3-A3CJ-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014792	119014792	Frame_Shift_Del	C	-	p.G235fs
LIHC	TCGA-G3-A3CJ-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120801787:120802284:120803565:120803654:120809312:120809497,	120803566	120803654	120803610	120803610	Frame_Shift_Del	T	-	p.K901fs
LIHC	TCGA-G3-A3CJ-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120817467:120817815:120818723:120818909:120819113:120819230,	120818724	120818909	120818874	120818874	Frame_Shift_Del	A	-	p.F493fs
LIHC	TCGA-G3-A3CJ-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120820735:120820840:120824910:120825082:120828957:120829166,	120824911	120825082	120824942	120824942	Frame_Shift_Del	G	-	p.P365fs
LIHC	TCGA-G3-A3CJ-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120820735:120820840:120824910:120825082:120828957:120829166,	120824911	120825082	120824980	120824980	Frame_Shift_Del	T	-	p.K351fs
LIHC	TCGA-G3-A3CJ-01	INPP5F	ENST00000361976.2,ENST00000369083.3	chr10	121551380:121551548:121551668:121551725:121556226:121556425,	121551669	121551725	121551681	121551681	Frame_Shift_Del	T	-	p.F210fs
LIHC	TCGA-G3-A3CJ-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121662412:121662521:121663595:121663789:121668552:121668642,	121663596	121663789	121663779	121663779	Frame_Shift_Del	A	-	p.E364fs
LIHC	TCGA-G3-A3CJ-01	WDR11	ENST00000263461.6,ENST00000604585.1	chr10	122626086:122626276:122626577:122626681:122630681:122630858,	122626578	122626681	122626653	122626653	Frame_Shift_Del	C	-	p.L422fs
LIHC	TCGA-G3-A3CJ-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123659380:123659509:123661905:123662135:123670420:123670666,123658355:123658484:123661905:123662135:123670420:123670666,	123661906	123662135	123661942	123661942	Frame_Shift_Del	A	-	p.F259fs
LIHC	TCGA-G3-A3CJ-01	ATE1	ENST00000540606.1,ENST00000369043.3,ENST00000369040.3	chr10	123659380:123659509:123661905:123662135:123670420:123670666,123658355:123658484:123661905:123662135:123670420:123670666,	123661906	123662135	123662074	123662074	Frame_Shift_Del	C	-	p.R215fs
LIHC	TCGA-G3-A3CJ-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123842890	123842890	Frame_Shift_Del	A	-	p.Q292fs
LIHC	TCGA-G3-A3CJ-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123842951	123842951	Frame_Shift_Del	C	-	p.L312fs
LIHC	TCGA-G3-A3CJ-01	CUZD1	ENST00000392790.1,ENST00000368904.1,ENST00000545804.1	chr10	124598532:124598747:124600693:124600844:124605277:124605691,	124600694	124600844	124600808	124600808	Frame_Shift_Del	T	-	p.N40fs
LIHC	TCGA-G3-A3CJ-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742321	124742321	Frame_Shift_Del	G	-	p.G97fs
LIHC	TCGA-G3-A3CJ-01	PSTK	ENST00000406217.2,ENST00000368887.3,ENST00000405485.1	chr10	124740046:124740211:124742248:124742540:124742787:124742986,	124742249	124742540	124742491	124742491	Frame_Shift_Del	T	-	p.N153fs
LIHC	TCGA-G3-A3CJ-01	PSTK	ENST00000405485.1	chr10	124742805:124742986:124745815:124747020:124749689:124749851,	124745816	124747020	124745851	124745851	Frame_Shift_Del	A	-	p.E248fs
LIHC	TCGA-G3-A3CJ-01	PSTK	ENST00000483755.1	chr10	124742805:124742986:124745815:124745891:124746384:124746478,124742805:124742986:124745815:124745891:124749689:124749851,	124745816	124745891	124745851	124745851	Frame_Shift_Del	A	-	p.E248fs
LIHC	TCGA-G3-A3CJ-01	IKZF5	ENST00000496605.1	chr10	124755662:124755692:124758008:124758174:124766541:124766692,	124758009	124758174	124758097	124758097	Frame_Shift_Del	A	-	p.F15fs
LIHC	TCGA-G3-A3CJ-01	IKZF5	ENST00000368886.5	chr10	124755662:124755692:124758008:124758187:124766541:124766692,	124758009	124758187	124758097	124758097	Frame_Shift_Del	A	-	p.F15fs
LIHC	TCGA-G3-A3CJ-01	ACADSB	ENST00000496730.2,ENST00000358776.4	chr10	124797262:124797363:124799981:124800188:124800724:124800895,	124799982	124800188	124800151	124800151	Frame_Shift_Del	A	-	p.Q158fs
LIHC	TCGA-G3-A3CJ-01	ACADSB	ENST00000368869.4,ENST00000358776.4	chr10	124806724:124806814:124810564:124810702:124812576:124812676,	124810565	124810702	124810654	124810654	Frame_Shift_Del	A	-	p.G360fs
LIHC	TCGA-G3-A3CJ-01	ZRANB1	ENST00000359653.4	chr10	126662213:126662285:126662768:126662967:126670277:126670398,	126662769	126662967	126662898	126662898	Frame_Shift_Del	G	-	p.W453fs
LIHC	TCGA-G3-A3CJ-01	BCCIP	ENST00000278100.6	chr10	127519988:127520176:127522340:127522515:127529823:127529899,127519988:127520176:127522340:127522515:127524672:127525122,	127522341	127522515	127522462	127522462	Frame_Shift_Del	A	-	p.K243fs
LIHC	TCGA-G3-A3CJ-01	BCCIP	ENST00000278100.6	chr10	127519988:127520176:127522340:127522515:127529823:127529899,127519988:127520176:127522340:127522515:127524672:127525122,	127522341	127522515	127522504	127522504	Frame_Shift_Del	T	-	p.F256fs
LIHC	TCGA-G3-A3CJ-01	DHX32	ENST00000284690.3	chr10	127541111:127541211:127542529:127542772:127548171:127548544,	127542530	127542772	127542640	127542640	Frame_Shift_Del	T	-	p.R328fs
LIHC	TCGA-G3-A3CJ-01	DHX32	ENST00000415732.1	chr10	127555697:127555752:127569111:127569640:127584786:127585005,	127569112	127569640	127569296	127569296	Frame_Shift_Del	A	-	p.L33fs
LIHC	TCGA-G3-A3CJ-01	DOCK1	ENST00000280333.6	chr10	128797617:128797699:128798435:128798571:128806995:128807068,	128798436	128798571	128798543	128798543	Frame_Shift_Del	G	-	p.S319fs
LIHC	TCGA-G3-A3CJ-01	DOCK1	ENST00000280333.6	chr10	128821463:128821588:128822948:128823047:128824615:128824688,	128822949	128823047	128822956	128822956	Frame_Shift_Del	T	-	p.I466fs
LIHC	TCGA-G3-A3CJ-01	PTPRE	ENST00000479896.1,ENST00000419012.2,ENST00000306042.5,ENST00000254667.3	chr10	129847798:129847930:129854386:129854477:129859202:129859279,	129854387	129854477	129854448	129854448	Frame_Shift_Del	A	-	p.E161fs
LIHC	TCGA-G3-A3CJ-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913269	129913269	Frame_Shift_Del	C	-	p.G468fs
LIHC	TCGA-G3-A3CJ-01	MGMT	ENST00000482653.1	chr10	131265525:131265560:131334504:131334641:131362042:131362426,	131334505	131334641	131334513	131334513	Frame_Shift_Del	A	-	p.G30fs
LIHC	TCGA-G3-A3CJ-01	MGMT	ENST00000306010.7	chr10	131506158:131506307:131557465:131557605:131565051:131566271,	131557466	131557605	131557560	131557560	Frame_Shift_Del	C	-	p.N154fs
LIHC	TCGA-G3-A3CJ-01	INPP5A	ENST00000445580.1	chr10	134594352:134594421:134595364:134595401:134595540:134595909,	134595365	134595401	134595395	134595395	Frame_Shift_Del	G	-	p.G397fs
LIHC	TCGA-G3-A3CJ-01	INPP5A	ENST00000368594.3	chr10	134594352:134594421:134595364:134595452:134595540:134595909,	134595365	134595452	134595395	134595395	Frame_Shift_Del	G	-	p.G397fs
LIHC	TCGA-G3-A3CJ-01	ADAM8	ENST00000485491.2,ENST00000445355.3	chr10	135080855:135080921:135081432:135081622:135082251:135082366,	135081433	135081622	135081595	135081595	Frame_Shift_Del	C	-	p.G697fs
LIHC	TCGA-G3-A3CJ-01	ADAM8	ENST00000559180.1,ENST00000415217.3,ENST00000463298.1	chr10	135087662:135087739:135088987:135089091:135090275:135090354,	135088988	135089091	135089065	135089065	Frame_Shift_Del	G	-	p.L25fs
LIHC	TCGA-G3-A3CJ-01	TUBGCP2	ENST00000252936.3,ENST00000417178.2,ENST00000368563.2,ENST00000543663.1,ENST00000368562.1	chr10	135095726:135095846:135096581:135096725:135097385:135097506,	135096582	135096725	135096645	135096645	Frame_Shift_Del	G	-	p.P742fs
LIHC	TCGA-G3-A3CJ-01	TUBGCP2	ENST00000482278.1	chr10	135095726:135095846:135096581:135096688:135097385:135097506,	135096582	135096688	135096645	135096645	Frame_Shift_Del	G	-	p.P742fs
LIHC	TCGA-G3-A3CJ-01	TUBGCP2	ENST00000252936.3,ENST00000417178.2,ENST00000482278.1,ENST00000368563.2,ENST00000543663.1,ENST00000368562.1	chr10	135097385:135097506:135098588:135098717:135098959:135099132,	135098589	135098717	135098593	135098593	Frame_Shift_Del	G	-	p.Q674fs
LIHC	TCGA-G3-A3CJ-01	PAOX	ENST00000368539.4,ENST00000368535.2,ENST00000278060.5,ENST00000357296.3	chr10	135194963:135195163:135197463:135197716:135202459:135202572,	135197464	135197716	135197502	135197502	Frame_Shift_Del	C	-	p.P303fs
LIHC	TCGA-G3-A3CJ-01	SIRT3	ENST00000525319.1,ENST00000529382.1,ENST00000382743.4,ENST00000532837.1	chr11	216610:216718:218831:219041:224077:224239,	218832	219041	218840	218840	Frame_Shift_Del	T	-	p.T391fs
LIHC	TCGA-G3-A3CJ-01	SIRT3	ENST00000524564.1	chr11	216610:216718:218777:219041:224077:224239,	218778	219041	218840	218840	Frame_Shift_Del	T	-	p.T391fs
LIHC	TCGA-G3-A3CJ-01	SIRT3	ENST00000525319.1,ENST00000529382.1,ENST00000382743.4,ENST00000532837.1	chr11	216610:216718:218831:219041:224077:224239,	218832	219041	218993	218993	Frame_Shift_Del	G	-	p.R340fs
LIHC	TCGA-G3-A3CJ-01	SIRT3	ENST00000524564.1	chr11	216610:216718:218777:219041:224077:224239,	218778	219041	218993	218993	Frame_Shift_Del	G	-	p.R340fs
LIHC	TCGA-G3-A3CJ-01	SIRT3	ENST00000524564.1,ENST00000525319.1,ENST00000529382.1,ENST00000382743.4,ENST00000532837.1	chr11	218831:219041:224077:224239:230451:230552,	224078	224239	224083	224083	Frame_Shift_Del	G	-	p.L322fs
LIHC	TCGA-G3-A3CJ-01	NLRP6	ENST00000534750.1	chr11	279833:279872:280083:281839:282704:282797,	280084	281839	281492	281492	Frame_Shift_Del	C	-	p.C586fs
LIHC	TCGA-G3-A3CJ-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380831	380831	Frame_Shift_Del	G	-	p.W959fs
LIHC	TCGA-G3-A3CJ-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380831	380831	Frame_Shift_Del	G	-	p.W959fs
LIHC	TCGA-G3-A3CJ-01	RNH1	ENST00000527485.1,ENST00000397615.2,ENST00000534797.1,ENST00000397614.1,ENST00000354420.2,ENST00000529306.1,ENST00000356187.5,ENST00000438658.2,ENST00000529368.1,ENST00000397604.3,ENST00000533410.1	chr11	499061:499185:499828:499999:500483:500654,	499829	499999	499835	499835	Frame_Shift_Del	T	-	p.K146fs
LIHC	TCGA-G3-A3CJ-01	RNH1	ENST00000525701.1,ENST00000529115.1	chr11	499061:499185:499828:499923:500483:500654,	499829	499923	499835	499835	Frame_Shift_Del	T	-	p.K146fs
LIHC	TCGA-G3-A3CJ-01	RASSF7	ENST00000344375.4,ENST00000397582.3	chr11	560998:561033:561761:561892:562078:562205,	561762	561892	561869	561869	Frame_Shift_Del	T	-	p.V34fs
LIHC	TCGA-G3-A3CJ-01	IRF7	ENST00000348655.6,ENST00000397570.1	chr11	613950:614037:614173:614399:614475:614531,613821:613865:614173:614399:614475:614531,	614174	614399	614195	614195	Frame_Shift_Del	G	-	p.L233fs
LIHC	TCGA-G3-A3CJ-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618714	618714	Frame_Shift_Del	G	-	p.P615fs
LIHC	TCGA-G3-A3CJ-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618760	618760	Frame_Shift_Del	C	-	p.G600fs
LIHC	TCGA-G3-A3CJ-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618853	618853	Frame_Shift_Del	C	-	p.G569fs
LIHC	TCGA-G3-A3CJ-01	EPS8L2	ENST00000530452.2	chr11	721284:721352:721564:721691:722400:722500,	721565	721691	721655	721655	Frame_Shift_Del	A	-	p.K288fs
LIHC	TCGA-G3-A3CJ-01	TALDO1	ENST00000530440.1	chr11	747463:747578:755878:756002:758949:759057,747463:747578:755878:756002:759008:759057,	755879	756002	755921	755921	Frame_Shift_Del	C	-	p.S47fs
LIHC	TCGA-G3-A3CJ-01	TALDO1	ENST00000319006.3,ENST00000533796.1,ENST00000530119.1,ENST00000528097.1	chr11	755878:756002:758949:759057:760121:760253,	758950	759057	758959	758959	Frame_Shift_Del	G	-	p.E77fs
LIHC	TCGA-G3-A3CJ-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1015913	1015913	Frame_Shift_Del	G	-	p.P2296fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1262146	1262146	Frame_Shift_Del	G	-	p.G1349fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263169	1263169	Frame_Shift_Del	G	-	p.G1690fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263294	1263294	Frame_Shift_Del	C	-	p.R1731fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264295	1264295	Frame_Shift_Del	C	-	p.T2065fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264554	1264554	Frame_Shift_Del	C	-	p.N2151fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264672	1264672	Frame_Shift_Del	C	-	p.P2192fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1265289	1265289	Frame_Shift_Del	G	-	p.V2396fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266225	1266225	Frame_Shift_Del	C	-	p.N2708fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266765	1266765	Frame_Shift_Del	C	-	p.Y2888fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266872	1266872	Frame_Shift_Del	C	-	p.A2924fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267023	1267023	Frame_Shift_Del	C	-	p.C2974fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268269	1268269	Frame_Shift_Del	C	-	p.P3391fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269490	1269490	Frame_Shift_Del	T	-	p.F3797fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1270114	1270114	Frame_Shift_Del	C	-	p.P4006fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1270345	1270345	Frame_Shift_Del	C	-	p.P4083fs
LIHC	TCGA-G3-A3CJ-01	MUC5B	ENST00000529681.1,ENST00000447027.1,ENST00000526859.1	chr11	1278855:1278940:1279328:1279433:1279559:1279597,	1279329	1279433	1279348	1279348	Frame_Shift_Del	C	-	p.C5493fs
LIHC	TCGA-G3-A3CJ-01	LSP1	ENST00000406638.2,ENST00000421485.1,ENST00000451814.1,ENST00000432093.1,ENST00000405957.2,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1892581:1892642:1902661:1902826:1904648:1904658,1901316:1901454:1902661:1902826:1904648:1904658,	1902662	1902826	1902755	1902755	Frame_Shift_Del	G	-	p.E33fs
LIHC	TCGA-G3-A3CJ-01	LSP1	ENST00000406638.2,ENST00000472974.1,ENST00000432093.1,ENST00000405957.2,ENST00000485341.1,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1902661:1902826:1904648:1904790:1905161:1905227,	1904649	1904790	1904721	1904721	Frame_Shift_Del	G	-	p.E81fs
LIHC	TCGA-G3-A3CJ-01	TH	ENST00000352909.3	chr11	2189720:2189895:2190879:2191101:2191919:2192000,2189720:2189895:2190879:2191101:2192914:2193025,2189720:2189895:2190879:2191101:2192926:2193035,	2190880	2191101	2190958	2190958	Frame_Shift_Del	C	-	p.G109fs
LIHC	TCGA-G3-A3CJ-01	KCNQ1	ENST00000155840.5,ENST00000335475.5	chr11	2609942:2610084:2683190:2683311:2790073:2790149,	2683191	2683311	2683274	2683274	Frame_Shift_Del	G	-	p.G493fs
LIHC	TCGA-G3-A3CJ-01	NAP1L4	ENST00000399614.2	chr11	2997253:2997353:2999513:2999572:3000436:3000467,2997253:2997353:2999513:2999572:3013483:3013518,	2999514	2999572	2999528	2999528	Frame_Shift_Del	T	-	p.N20fs
LIHC	TCGA-G3-A3CJ-01	OSBPL5	ENST00000525498.1	chr11	3140776:3140861:3141773:3141854:3143226:3143328,	3141774	3141854	3141777	3141777	Frame_Shift_Del	G	-	p.P160fs
LIHC	TCGA-G3-A3CJ-01	OSBPL5	ENST00000459995.1,ENST00000534491.1,ENST00000263650.7	chr11	3140776:3140861:3141650:3141854:3143226:3143328,	3141651	3141854	3141777	3141777	Frame_Shift_Del	G	-	p.P160fs
LIHC	TCGA-G3-A3CJ-01	NUP98	ENST00000324932.7,ENST00000355260.3,ENST00000359171.4	chr11	3721839:3722069:3723692:3724122:3726429:3726586,	3723693	3724122	3723725	3723725	Frame_Shift_Del	A	-	p.F1160fs
LIHC	TCGA-G3-A3CJ-01	NUP98	ENST00000324932.7,ENST00000355260.3,ENST00000359171.4	chr11	3721839:3722069:3723692:3724122:3726429:3726586,	3723693	3724122	3724082	3724082	Frame_Shift_Del	A	-	p.F1041fs
LIHC	TCGA-G3-A3CJ-01	NUP98	ENST00000429801.1	chr11	3721839:3722069:3724001:3724122:3726429:3726586,	3724002	3724122	3724082	3724082	Frame_Shift_Del	A	-	p.F1041fs
LIHC	TCGA-G3-A3CJ-01	NUP98	ENST00000324932.7,ENST00000355260.3,ENST00000359171.4	chr11	3727674:3727857:3733793:3733958:3735047:3735225,	3733794	3733958	3733882	3733882	Frame_Shift_Del	T	-	p.K886fs
LIHC	TCGA-G3-A3CJ-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3789810:3789974:3792977:3793158:3794861:3794969,	3792978	3793158	3793118	3793118	Frame_Shift_Del	G	-	p.P215fs
LIHC	TCGA-G3-A3CJ-01	RRM1	ENST00000423050.2,ENST00000537197.1,ENST00000533349.1,ENST00000531591.1,ENST00000529109.1,ENST00000534285.1,ENST00000532170.1,ENST00000533495.1,ENST00000300738.5	chr11	4143370:4143450:4144412:4144614:4147913:4148047,	4144413	4144614	4144533	4144533	Frame_Shift_Del	A	-	p.R413fs
LIHC	TCGA-G3-A3CJ-01	RRM1	ENST00000423050.2,ENST00000537197.1,ENST00000533349.1,ENST00000531591.1,ENST00000529109.1,ENST00000534285.1,ENST00000532170.1,ENST00000533495.1,ENST00000300738.5	chr11	4143370:4143450:4144412:4144614:4147913:4148047,	4144413	4144614	4144564	4144564	Frame_Shift_Del	A	-	p.K424fs
LIHC	TCGA-G3-A3CJ-01	HBD	ENST00000380299.3	chr11	5254159:5254322:5255220:5255443:5255571:5255713,	5255221	5255443	5255327	5255327	Frame_Shift_Del	C	-	p.G70fs
LIHC	TCGA-G3-A3CJ-01	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687267	5687267	Frame_Shift_Del	T	-	p.N271fs
LIHC	TCGA-G3-A3CJ-01	APBB1	ENST00000526925.2,ENST00000533139.1,ENST00000608704.1,ENST00000389906.2,ENST00000609360.1,ENST00000608645.1,ENST00000609331.1,ENST00000608435.1,ENST00000530885.1,ENST00000311051.3,ENST00000529890.1,ENST00000608655.1,ENST00000299402.6,ENST00000608394.1,ENST00000533407.2	chr11	6423311:6423439:6423805:6423955:6424374:6424438,	6423806	6423955	6423808	6423808	Frame_Shift_Del	C	-	p.E418fs
LIHC	TCGA-G3-A3CJ-01	APBB1	ENST00000311051.3	chr11	6424876:6425052:6431856:6432591:6440214:6440300,6424876:6425052:6431856:6432591:6440575:6440644,	6431857	6432591	6431868	6431868	Frame_Shift_Del	G	-	p.P237fs
LIHC	TCGA-G3-A3CJ-01	HPX	ENST00000265983.3	chr11	6458854:6458882:6459585:6459739:6461394:6461516,	6459586	6459739	6459690	6459690	Frame_Shift_Del	G	-	p.P129fs
LIHC	TCGA-G3-A3CJ-01	HPX	ENST00000525057.1	chr11	6458854:6458882:6459581:6459739:6461394:6461516,	6459582	6459739	6459690	6459690	Frame_Shift_Del	G	-	p.P129fs
LIHC	TCGA-G3-A3CJ-01	RRP8	ENST00000533907.1	chr11	6621898:6622005:6622155:6622832:6623081:6623445,	6622156	6622832	6622690	6622690	Frame_Shift_Del	A	-	p.F202fs
LIHC	TCGA-G3-A3CJ-01	RRP8	ENST00000254605.6	chr11	6622155:6622285:6622378:6622832:6623081:6623445,	6622379	6622832	6622690	6622690	Frame_Shift_Del	A	-	p.F202fs
LIHC	TCGA-G3-A3CJ-01	TPP1	ENST00000533371.1,ENST00000524924.1,ENST00000299427.6	chr11	6636492:6636560:6636672:6636793:6637235:6637305,	6636673	6636793	6636790	6636790	Frame_Shift_Del	G	-	p.P140fs
LIHC	TCGA-G3-A3CJ-01	TPP1	ENST00000534644.1,ENST00000528571.1	chr11	6638600:6638659:6638856:6639007:6640426:6640498,	6638857	6639007	6638981	6638981	Frame_Shift_Del	C	-	p.A86fs
LIHC	TCGA-G3-A3CJ-01	SYT9	ENST00000318881.6	chr11	7324269:7324621:7334625:7335172:7437272:7437393,	7334626	7335172	7334933	7334933	Frame_Shift_Del	A	-	p.K269fs
LIHC	TCGA-G3-A3CJ-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000529575.1,ENST00000533792.1	chr11	7642165:7642258:7647007:7647122:7649515:7649577,	7647008	7647122	7647039	7647039	Frame_Shift_Del	C	-	p.A248fs
LIHC	TCGA-G3-A3CJ-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000530582.1,ENST00000534409.1,ENST00000532381.1,ENST00000533792.1,ENST00000530081.1	chr11	7655725:7655783:7656782:7656824:7660962:7661042,	7656783	7656824	7656819	7656819	Frame_Shift_Del	C	-	p.P411fs
LIHC	TCGA-G3-A3CJ-01	EIF3F	ENST00000528653.1	chr11	8008902:8009263:8013327:8013518:8013630:8013710,	8013328	8013518	8013366	8013366	Frame_Shift_Del	T	-	p.F135fs
LIHC	TCGA-G3-A3CJ-01	EIF3F	ENST00000537635.1,ENST00000309828.4,ENST00000533626.1	chr11	8008902:8009263:8013327:8013398:8013630:8013710,	8013328	8013398	8013366	8013366	Frame_Shift_Del	T	-	p.F135fs
LIHC	TCGA-G3-A3CJ-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8751564	8751564	Frame_Shift_Del	T	-	p.T425fs
LIHC	TCGA-G3-A3CJ-01	AKIP1	ENST00000299576.5,ENST00000396648.2,ENST00000309377.4,ENST00000534147.1,ENST00000530281.1	chr11	8936372:8936477:8938833:8938914:8940883:8940961,	8938834	8938914	8938845	8938845	Frame_Shift_Del	A	-	p.R113fs
LIHC	TCGA-G3-A3CJ-01	C11orf16	ENST00000326053.5	chr11	8942840:8943062:8947009:8947654:8948486:8948721,	8947010	8947654	8947145	8947145	Frame_Shift_Del	G	-	p.Q357fs
LIHC	TCGA-G3-A3CJ-01	C11orf16	ENST00000525780.1,ENST00000326053.5	chr11	8947009:8947654:8948486:8948721:8950923:8950975,	8948487	8948721	8948577	8948577	Frame_Shift_Del	C	-	p.D157fs
LIHC	TCGA-G3-A3CJ-01	C11orf16	ENST00000525780.1,ENST00000326053.5	chr11	8947009:8947654:8948486:8948721:8950923:8950975,	8948487	8948721	8948677	8948677	Frame_Shift_Del	A	-	p.L123fs
LIHC	TCGA-G3-A3CJ-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9048910:9049108:9051430:9051592,	9048911	9049108	9049089	9049089	Frame_Shift_Del	C	-	p.E841fs
LIHC	TCGA-G3-A3CJ-01	SCUBE2	ENST00000450649.2	chr11	9055172:9055343:9068902:9069109:9075183:9075306,	9068903	9069109	9069082	9069082	Frame_Shift_Del	T	-	p.K608fs
LIHC	TCGA-G3-A3CJ-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9068902:9069109:9075183:9075306:9077339:9077456,9074685:9074759:9075183:9075306:9077339:9077456,9074749:9074762:9075183:9075306:9077339:9077456,	9075184	9075306	9075226	9075226	Frame_Shift_Del	G	-	p.H430fs
LIHC	TCGA-G3-A3CJ-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000520467.1	chr11	9090916:9091042:9096027:9096162:9100930:9101056,	9096028	9096162	9096069	9096069	Frame_Shift_Del	A	-	p.F159fs
LIHC	TCGA-G3-A3CJ-01	DENND5A	ENST00000529977.1	chr11	9163520:9163655:9164268:9165032:9165643:9165726,	9164269	9165032	9165019	9165019	Frame_Shift_Del	C	-	p.G1106fs
LIHC	TCGA-G3-A3CJ-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000531747.1,ENST00000530044.1	chr11	9164268:9164392:9164949:9165032:9165643:9165726,	9164950	9165032	9165019	9165019	Frame_Shift_Del	C	-	p.G1106fs
LIHC	TCGA-G3-A3CJ-01	DENND5A	ENST00000328194.3,ENST00000530044.1,ENST00000526707.1	chr11	9200404:9200620:9202313:9202631:9215040:9215117,	9202314	9202631	9202504	9202504	Frame_Shift_Del	G	-	p.P422fs
LIHC	TCGA-G3-A3CJ-01	TMEM41B	ENST00000524543.1,ENST00000533723.1,ENST00000527813.1,ENST00000528080.1	chr11	9316805:9316934:9321130:9321248:9335867:9336114,	9321131	9321248	9321161	9321161	Frame_Shift_Del	A	-	p.L70fs
LIHC	TCGA-G3-A3CJ-01	SWAP70	ENST00000524817.1,ENST00000318950.6	chr11	9715692:9715833:9735012:9735186:9746204:9746432,	9735013	9735186	9735142	9735142	Frame_Shift_Del	T	-	p.F124fs
LIHC	TCGA-G3-A3CJ-01	SBF2	ENST00000530741.1	chr11	9834181:9834255:9838386:9838571:9850902:9851043,9834181:9834255:9838386:9838571:9849672:9849768,	9838387	9838571	9838400	9838400	Frame_Shift_Del	T	-	p.K1322fs
LIHC	TCGA-G3-A3CJ-01	SBF2	ENST00000530741.1	chr11	9834181:9834255:9838386:9838571:9850902:9851043,9834181:9834255:9838386:9838571:9849672:9849768,	9838387	9838571	9838445	9838445	Frame_Shift_Del	T	-	p.N1307fs
LIHC	TCGA-G3-A3CJ-01	SBF2	ENST00000533770.1,ENST00000256190.8	chr11	9864171:9864317:9867111:9867287:9868502:9868630,	9867112	9867287	9867183	9867183	Frame_Shift_Del	A	-	p.F1013fs
LIHC	TCGA-G3-A3CJ-01	SBF2	ENST00000533770.1,ENST00000527019.1,ENST00000256190.8	chr11	10022460:10022569:10024103:10024236:10049998:10050104,	10024104	10024236	10024227	10024227	Frame_Shift_Del	T	-	p.N210fs
LIHC	TCGA-G3-A3CJ-01	LYVE1	ENST00000531706.1,ENST00000256178.3	chr11	10582041:10582347:10585486:10585626:10585749:10585777,	10585487	10585626	10585579	10585579	Frame_Shift_Del	G	-	p.P102fs
LIHC	TCGA-G3-A3CJ-01	MRVI1	ENST00000527509.2,ENST00000531107.1,ENST00000421747.1,ENST00000534266.2,ENST00000552103.1,ENST00000424001.1,ENST00000545852.1,ENST00000529448.1,ENST00000547195.1,ENST00000558540.1,ENST00000436272.1,ENST00000423302.2	chr11	10645324:10645403:10647512:10648130:10649262:10649304,	10647513	10648130	10647995	10647995	Frame_Shift_Del	G	-	p.L205fs
LIHC	TCGA-G3-A3CJ-01	CTR9	ENST00000361367.2,ENST00000524523.1	chr11	10776504:10776744:10777224:10777342:10778295:10778385,	10777225	10777342	10777340	10777340	Frame_Shift_Del	T	-	p.L167fs
LIHC	TCGA-G3-A3CJ-01	EIF4G2	ENST00000339995.5,ENST00000524932.1,ENST00000532082.1,ENST00000531416.1,ENST00000532349.1,ENST00000525681.1,ENST00000396525.2,ENST00000526148.1	chr11	10825107:10825137:10825445:10825597:10825683:10825750,	10825446	10825597	10825574	10825574	Frame_Shift_Del	G	-	p.L193fs
LIHC	TCGA-G3-A3CJ-01	GALNT18	ENST00000227756.4	chr11	11394061:11394176:11398728:11398926:11400627:11400811,	11398729	11398926	11398770	11398770	Frame_Shift_Del	G	-	p.P312fs
LIHC	TCGA-G3-A3CJ-01	GALNT18	ENST00000227756.4	chr11	11394061:11394176:11398728:11398926:11400627:11400811,	11398729	11398926	11398791	11398791	Frame_Shift_Del	C	-	p.W305fs
LIHC	TCGA-G3-A3CJ-01	DKK3	ENST00000528188.1,ENST00000326932.4,ENST00000396505.2,ENST00000450094.2	chr11	11986161:11986233:11987355:11987512:11988500:11988645,	11987356	11987512	11987473	11987473	Frame_Shift_Del	C	-	p.G238fs
LIHC	TCGA-G3-A3CJ-01	MICAL2	ENST00000527546.1,ENST00000256194.4,ENST00000537344.1,ENST00000525979.1	chr11	12265533:12265659:12277189:12277297:12278331:12278456,12271487:12271820:12277189:12277297:12278331:12278456,12270730:12270793:12277189:12277297:12278331:12278456,	12277190	12277297	12277202	12277202	Frame_Shift_Del	A	-	p.K954fs
LIHC	TCGA-G3-A3CJ-01	BTBD10	ENST00000528120.1,ENST00000527102.2,ENST00000530907.1,ENST00000278174.5	chr11	13410248:13410688:13424714:13424825:13427205:13427403,	13424715	13424825	13424756	13424756	Frame_Shift_Del	A	-	p.L359fs
LIHC	TCGA-G3-A3CJ-01	COPB1	ENST00000249923.3,ENST00000439561.2,ENST00000534234.1	chr11	14501114:14501260:14502304:14502451:14502535:14502643,	14502305	14502451	14502414	14502414	Frame_Shift_Del	T	-	p.N369fs
LIHC	TCGA-G3-A3CJ-01	CYP2R1	ENST00000334636.5	chr11	14902179:14902314:14907321:14907463:14912698:14913186,14902179:14902314:14907321:14907463:14911977:14912015,14902179:14902314:14907321:14907463:14913526:14913798,	14907322	14907463	14907371	14907371	Frame_Shift_Del	A	-	p.C10fs
LIHC	TCGA-G3-A3CJ-01	CALCA	ENST00000331587.4,ENST00000469608.1,ENST00000396372.2,ENST00000359642.3	chr11	14989373:14989400:14991480:14991621:14992652:14992747,14990371:14990543:14991480:14991621:14992652:14992747,	14991481	14991621	14991538	14991538	Frame_Shift_Del	T	-	p.N57fs
LIHC	TCGA-G3-A3CJ-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17113705:17113823:17115807:17115932:17118603:17118811,	17115808	17115932	17115908	17115908	Frame_Shift_Del	C	-	p.E1451fs
LIHC	TCGA-G3-A3CJ-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17124208:17124378:17126715:17126852:17131978:17132108,	17126716	17126852	17126806	17126806	Frame_Shift_Del	T	-	p.Q1197fs
LIHC	TCGA-G3-A3CJ-01	PIK3C2A	ENST00000265970.7,ENST00000540361.1	chr11	17135907:17136012:17139037:17139218:17140191:17140286,	17139038	17139218	17139068	17139068	Frame_Shift_Del	T	-	p.K1062fs
LIHC	TCGA-G3-A3CJ-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17191166	17191166	Frame_Shift_Del	T	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	NUCB2	ENST00000323688.6,ENST00000529010.1,ENST00000531242.1	chr11	17333627:17333667:17336932:17337022:17351673:17351843,	17336933	17337022	17336972	17336972	Frame_Shift_Del	T	-	p.F318fs
LIHC	TCGA-G3-A3CJ-01	NUCB2	ENST00000323688.6,ENST00000529010.1,ENST00000531242.1	chr11	17333627:17333667:17336932:17337022:17351673:17351843,	17336933	17337022	17336988	17336988	Frame_Shift_Del	A	-	p.E323fs
LIHC	TCGA-G3-A3CJ-01	USH1C	ENST00000005226.7	chr11	17515878:17515923:17517115:17517224:17518304:17518360,	17517116	17517224	17517119	17517119	Frame_Shift_Del	G	-	p.P884fs
LIHC	TCGA-G3-A3CJ-01	HPS5	ENST00000545561.1,ENST00000438420.2,ENST00000349215.3,ENST00000352460.3,ENST00000544218.1,ENST00000396253.3	chr11	18308137:18308257:18309081:18309237:18309439:18309560,	18309082	18309237	18309127	18309127	Frame_Shift_Del	A	-	p.L777fs
LIHC	TCGA-G3-A3CJ-01	GTF2H1	ENST00000265963.4,ENST00000453096.2,ENST00000418116.2,ENST00000543932.1	chr11	18354606:18354775:18357300:18357493:18359655:18359821,	18357301	18357493	18357450	18357450	Frame_Shift_Del	A	-	p.K102fs
LIHC	TCGA-G3-A3CJ-01	GTF2H1	ENST00000265963.4,ENST00000453096.2,ENST00000418116.2,ENST00000543932.1	chr11	18354606:18354775:18357300:18357493:18359655:18359821,	18357301	18357493	18357467	18357467	Frame_Shift_Del	A	-	p.A107fs
LIHC	TCGA-G3-A3CJ-01	GTF2H1	ENST00000265963.4,ENST00000530496.2,ENST00000453096.2,ENST00000418116.2,ENST00000534641.1	chr11	18369383:18369466:18373427:18373516:18373875:18373993,	18373428	18373516	18373463	18373463	Frame_Shift_Del	G	-	p.L363fs
LIHC	TCGA-G3-A3CJ-01	LDHA	ENST00000542179.1,ENST00000430553.2,ENST00000375710.3,ENST00000540430.1,ENST00000538451.1,ENST00000545215.1,ENST00000541097.1,ENST00000422447.3,ENST00000379412.5	chr11	18425284:18425358:18426995:18427119:18428663:18428705,	18426996	18427119	18427091	18427091	Frame_Shift_Del	G	-	p.R269fs
LIHC	TCGA-G3-A3CJ-01	LDHC	ENST00000544105.1,ENST00000280704.4,ENST00000541669.1,ENST00000537486.1,ENST00000535809.1	chr11	18434264:18434390:18436730:18436848:18456286:18456460,18434264:18434390:18436730:18436848:18451283:18451457,	18436731	18436848	18436750	18436750	Frame_Shift_Del	C	-	p.A49fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC13	ENST00000446113.2	chr11	19138730:19138823:19164524:19164670:19167727:19167850,	19164525	19164670	19164545	19164545	Frame_Shift_Del	C	-	p.G16fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC13	ENST00000525490.1	chr11	19186598:19186692:19187848:19192115:19194269:19194367,	19187849	19192115	19192042	19192042	Frame_Shift_Del	T	-	p.V520fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC13	ENST00000399351.3,ENST00000446113.2	chr11	19187848:19187932:19191957:19192115:19194269:19194367,	19191958	19192115	19192042	19192042	Frame_Shift_Del	T	-	p.V520fs
LIHC	TCGA-G3-A3CJ-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000533746.1,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20127076:20127273:20129209:20129328:20136137:20136226,	20129210	20129328	20129232	20129232	Frame_Shift_Del	C	-	p.C2291fs
LIHC	TCGA-G3-A3CJ-01	HTATIP2	ENST00000443524.2,ENST00000419348.2,ENST00000421577.2,ENST00000451739.2	chr11	20388719:20388827:20398125:20398263:20403723:20403785,	20398126	20398263	20398242	20398242	Frame_Shift_Del	T	-	p.N140fs
LIHC	TCGA-G3-A3CJ-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21250877:21251000:21392398:21392494:21581734:21581928,21250877:21251000:21392398:21392494:21555919:21556060,	21392399	21392494	21392446	21392446	Frame_Shift_Del	A	-	p.N561fs
LIHC	TCGA-G3-A3CJ-01	MUC15	ENST00000436318.2,ENST00000529533.1,ENST00000455601.2	chr11	26582308:26582772:26584662:26584812:26586711:26587443,	26584663	26584812	26584717	26584717	Frame_Shift_Del	T	-	p.R291fs
LIHC	TCGA-G3-A3CJ-01	KIF18A	ENST00000533466.1,ENST00000263181.6	chr11	28106178:28106355:28110070:28110268:28112163:28112274,	28110071	28110268	28110111	28110111	Frame_Shift_Del	A	-	p.L286fs
LIHC	TCGA-G3-A3CJ-01	KIF18A	ENST00000533466.1,ENST00000263181.6	chr11	28110070:28110268:28112163:28112274:28112955:28113060,	28112164	28112274	28112187	28112187	Frame_Shift_Del	A	-	p.S226fs
LIHC	TCGA-G3-A3CJ-01	METTL15	ENST00000406787.3,ENST00000407364.3,ENST00000342303.5,ENST00000303459.6	chr11	28134864:28135151:28232608:28232745:28311752:28311944,	28232609	28232745	28232635	28232635	Frame_Shift_Del	G	-	p.S99fs
LIHC	TCGA-G3-A3CJ-01	METTL15	ENST00000406787.3,ENST00000407364.3,ENST00000342303.5,ENST00000303459.6	chr11	28134864:28135151:28232608:28232745:28311752:28311944,	28232609	28232745	28232647	28232647	Frame_Shift_Del	A	-	p.T103fs
LIHC	TCGA-G3-A3CJ-01	MPPED2	ENST00000448418.2,ENST00000358117.5	chr11	30526282:30526380:30557540:30557722:30601792:30602041,30516842:30517068:30557540:30557722:30601792:30602041,	30557541	30557722	30557616	30557616	Frame_Shift_Del	C	-	p.D79fs
LIHC	TCGA-G3-A3CJ-01	DCDC1	ENST00000597505.1,ENST00000452803.1	chr11	31287053:31287147:31312193:31312399:31327161:31327324,	31312194	31312399	31312356	31312356	Frame_Shift_Del	C	-	p.G266fs
LIHC	TCGA-G3-A3CJ-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P389fs
LIHC	TCGA-G3-A3CJ-01	RCN1	ENST00000533898.1,ENST00000532942.1,ENST00000530348.1,ENST00000054950.3	chr11	32118689:32118883:32119895:32120074:32122093:32122140,	32119896	32120074	32119940	32119940	Frame_Shift_Del	A	-	p.K166fs
LIHC	TCGA-G3-A3CJ-01	RCN1	ENST00000533898.1,ENST00000532942.1,ENST00000054950.3	chr11	32119895:32120074:32122093:32122154:32124826:32125026,	32122094	32122154	32122098	32122098	Frame_Shift_Del	C	-	p.T211fs
LIHC	TCGA-G3-A3CJ-01	EIF3M	ENST00000323213.5	chr11	32605429:32605475:32608479:32608690:32610139:32610227,	32608480	32608690	32608638	32608638	Frame_Shift_Del	T	-	p.D41fs
LIHC	TCGA-G3-A3CJ-01	EIF3M	ENST00000524711.1	chr11	32605429:32605475:32608557:32608690:32610139:32610227,32605429:32605475:32608557:32608690:32611092:32611149,	32608558	32608690	32608638	32608638	Frame_Shift_Del	T	-	p.D41fs
LIHC	TCGA-G3-A3CJ-01	EIF3M	ENST00000532444.1	chr11	32605429:32605475:32608591:32608690:32610139:32610227,	32608592	32608690	32608638	32608638	Frame_Shift_Del	T	-	p.D41fs
LIHC	TCGA-G3-A3CJ-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635039	32635039	Frame_Shift_Del	T	-	p.N942fs
LIHC	TCGA-G3-A3CJ-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32636037	32636037	Frame_Shift_Del	C	-	p.G609fs
LIHC	TCGA-G3-A3CJ-01	CD59	ENST00000533403.1,ENST00000395850.3	chr11	33738915:33739017:33743924:33744009:33757927:33757954,	33743925	33744009	33743974	33743974	Frame_Shift_Del	C	-	p.G6fs
LIHC	TCGA-G3-A3CJ-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000531080.1,ENST00000532057.1,ENST00000526785.1,ENST00000530013.1,ENST00000530401.1,ENST00000448981.2	chr11	33770322:33770438:33772084:33772207:33773068:33773153,	33772085	33772207	33772103	33772103	Frame_Shift_Del	A	-	p.F301fs
LIHC	TCGA-G3-A3CJ-01	CAPRIN1	ENST00000341394.4,ENST00000532820.1,ENST00000389645.3,ENST00000529307.1,ENST00000530820.1	chr11	34101174:34101312:34104371:34104424:34104501:34104588,	34104372	34104424	34104414	34104414	Frame_Shift_Del	A	-	p.E290fs
LIHC	TCGA-G3-A3CJ-01	ABTB2	ENST00000298992.2,ENST00000435224.2	chr11	34172534:34174131:34175811:34175925:34176247:34176316,	34175812	34175925	34175859	34175859	Frame_Shift_Del	G	-	p.Q945fs
LIHC	TCGA-G3-A3CJ-01	ELF5	ENST00000312319.2,ENST00000257832.2,ENST00000429939.2	chr11	34501819:34501861:34502318:34502514:34503977:34504046,	34502319	34502514	34502358	34502358	Frame_Shift_Del	T	-	p.N221fs
LIHC	TCGA-G3-A3CJ-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34664174:34664274:34667985:34668231:34670565:34670628,	34667986	34668231	34667997	34667997	Frame_Shift_Del	T	-	p.F38fs
LIHC	TCGA-G3-A3CJ-01	PDHX	ENST00000533550.1,ENST00000448838.3,ENST00000227868.4	chr11	34952950:34953031:34969052:34969153:34978930:34979130,	34969053	34969153	34969100	34969100	Frame_Shift_Del	A	-	p.K82fs
LIHC	TCGA-G3-A3CJ-01	PDHX	ENST00000448838.3,ENST00000227868.4	chr11	34981966:34982065:34988186:34988361:34991685:34991833,	34988187	34988361	34988216	34988216	Frame_Shift_Del	A	-	p.Q209fs
LIHC	TCGA-G3-A3CJ-01	SLC1A2	ENST00000606205.1,ENST00000395753.1,ENST00000278379.3,ENST00000531628.1,ENST00000395750.1	chr11	35308303:35308498:35313833:35314067:35323065:35323075,	35313834	35314067	35313881	35313881	Frame_Shift_Del	A	-	p.F348fs
LIHC	TCGA-G3-A3CJ-01	PAMR1	ENST00000532848.1,ENST00000378878.3,ENST00000378880.2	chr11	35461174:35461241:35463028:35463241:35473435:35473486,35461174:35461241:35463028:35463241:35489548:35489656,	35463029	35463241	35463175	35463175	Frame_Shift_Del	C	-	p.G296fs
LIHC	TCGA-G3-A3CJ-01	PRR5L	ENST00000311599.5,ENST00000389693.3	chr11	36453402:36453460:36458934:36459026:36467849:36467990,36453402:36453460:36458934:36459026:36472758:36472885,	36458935	36459026	36459012	36459012	Frame_Shift_Del	T	-	p.F144fs
LIHC	TCGA-G3-A3CJ-01	TTC17	ENST00000299240.6,ENST00000525029.1,ENST00000039989.4,ENST00000526774.1	chr11	43419582:43419663:43421437:43421598:43422995:43423108,	43421438	43421598	43421518	43421518	Frame_Shift_Del	A	-	p.E380fs
LIHC	TCGA-G3-A3CJ-01	TTC17	ENST00000299240.6,ENST00000525029.1,ENST00000039989.4,ENST00000526774.1	chr11	43419582:43419663:43421437:43421598:43422995:43423108,	43421438	43421598	43421582	43421582	Frame_Shift_Del	A	-	p.A401fs
LIHC	TCGA-G3-A3CJ-01	TTC17	ENST00000039989.4,ENST00000525135.1	chr11	43469551:43469672:43471631:43471791:43472731:43472815,	43471632	43471791	43471747	43471747	Frame_Shift_Del	A	-	p.N968fs
LIHC	TCGA-G3-A3CJ-01	ALKBH3	ENST00000532129.1	chr11	43913590:43913679:43923065:43923275:43940587:43940592,43911311:43911378:43923065:43923275:43940587:43940592,	43923066	43923275	43923192	43923192	Frame_Shift_Del	C	-	p.P196fs
LIHC	TCGA-G3-A3CJ-01	TSPAN18	ENST00000340160.3,ENST00000518429.2,ENST00000533786.1,ENST00000520999.2,ENST00000520358.2	chr11	44927957:44928030:44931255:44931450:44939522:44939597,	44931256	44931450	44931375	44931375	Frame_Shift_Del	G	-	p.M61fs
LIHC	TCGA-G3-A3CJ-01	CREB3L1	ENST00000288400.3,ENST00000529193.1	chr11	46321485:46321714:46329366:46329551:46331539:46331618,	46329367	46329551	46329385	46329385	Frame_Shift_Del	G	-	p.W117fs
LIHC	TCGA-G3-A3CJ-01	DGKZ	ENST00000456247.2,ENST00000524984.1,ENST00000343674.6,ENST00000454345.1	chr11	46388864:46388949:46389201:46389297:46389551:46389557,46388864:46388949:46389201:46389297:46389554:46389629,	46389202	46389297	46389217	46389217	Frame_Shift_Del	G	-	p.G285fs
LIHC	TCGA-G3-A3CJ-01	DGKZ	ENST00000532868.2	chr11	46388864:46388949:46389204:46389297:46389551:46389557,	46389205	46389297	46389217	46389217	Frame_Shift_Del	G	-	p.G285fs
LIHC	TCGA-G3-A3CJ-01	DGKZ	ENST00000456247.2,ENST00000534802.1,ENST00000395574.3,ENST00000543978.1,ENST00000524984.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8	chr11	46400752:46400786:46401018:46401118:46401380:46401497,	46401019	46401118	46401089	46401089	Frame_Shift_Del	G	-	p.G1070fs
LIHC	TCGA-G3-A3CJ-01	DGKZ	ENST00000527911.1	chr11	46400752:46400786:46401003:46401118:46401380:46401497,	46401004	46401118	46401089	46401089	Frame_Shift_Del	G	-	p.G1070fs
LIHC	TCGA-G3-A3CJ-01	MDK	ENST00000489525.1	chr11	46403843:46404011:46404136:46404743:46405018:46405120,	46404137	46404743	46404272	46404272	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-G3-A3CJ-01	MDK	ENST00000395569.4	chr11	46403843:46404011:46404136:46404298:46405018:46405120,46403606:46403683:46404136:46404298:46405018:46405120,	46404137	46404298	46404272	46404272	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-G3-A3CJ-01	AMBRA1	ENST00000526545.1	chr11	46418999:46419493:46430062:46430256:46431825:46431918,46418999:46419493:46430062:46430256:46439462:46439545,	46430063	46430256	46430158	46430158	Frame_Shift_Del	C	-	p.G1103fs
LIHC	TCGA-G3-A3CJ-01	AMBRA1	ENST00000534300.1,ENST00000533727.1,ENST00000314845.3,ENST00000458649.2,ENST00000528950.1,ENST00000298834.3,ENST00000426438.1	chr11	46430062:46430256:46431825:46431918:46439462:46439545,	46431826	46431918	46431887	46431887	Frame_Shift_Del	C	-	p.D1050fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP1	ENST00000311956.4,ENST00000525488.1	chr11	46702842:46702929:46703600:46703732:46709722:46709810,	46703601	46703732	46703614	46703614	Frame_Shift_Del	C	-	p.E146fs
LIHC	TCGA-G3-A3CJ-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46804823:46804918:46806037:46806223:46810230:46810323,	46806038	46806223	46806169	46806169	Frame_Shift_Del	A	-	p.S675fs
LIHC	TCGA-G3-A3CJ-01	C11orf49	ENST00000534581.1,ENST00000527784.1,ENST00000525895.1,ENST00000395460.2,ENST00000527268.1,ENST00000543718.1,ENST00000536126.1,ENST00000525953.1,ENST00000526827.1,ENST00000378618.2,ENST00000528488.1,ENST00000278460.7,ENST00000534249.1,ENST00000378615.3	chr11	47176726:47176812:47178573:47178769:47179363:47179473,	47178574	47178769	47178762	47178762	Frame_Shift_Del	A	-	p.K214fs
LIHC	TCGA-G3-A3CJ-01	ARFGAP2	ENST00000532478.1	chr11	47189526:47189594:47189674:47189802:47192976:47193108,	47189675	47189802	47189736	47189736	Frame_Shift_Del	T	-	p.K336fs
LIHC	TCGA-G3-A3CJ-01	ARFGAP2	ENST00000395449.3,ENST00000524782.1,ENST00000533243.1,ENST00000419701.2,ENST00000426335.2,ENST00000527927.1,ENST00000319543.6	chr11	47189526:47189594:47189673:47189802:47192976:47193108,	47189674	47189802	47189736	47189736	Frame_Shift_Del	T	-	p.K336fs
LIHC	TCGA-G3-A3CJ-01	MADD	ENST00000407859.3,ENST00000349238.3,ENST00000395336.3,ENST00000311027.5	chr11	47307987:47308085:47310518:47310578:47310941:47311044,	47310519	47310578	47310562	47310562	Frame_Shift_Del	C	-	p.G899fs
LIHC	TCGA-G3-A3CJ-01	MADD	ENST00000395336.3,ENST00000311027.5	chr11	47312160:47312367:47314093:47314147:47315433:47315534,	47314094	47314147	47314120	47314120	Frame_Shift_Del	A	-	p.K1131fs
LIHC	TCGA-G3-A3CJ-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000311027.5,ENST00000395344.3,ENST00000402192.2	chr11	47346021:47346128:47348288:47348358:47350208:47350255,	47348289	47348358	47348313	47348313	Frame_Shift_Del	A	-	p.K1525fs
LIHC	TCGA-G3-A3CJ-01	SLC39A13	ENST00000531419.1,ENST00000531865.1	chr11	47433476:47433590:47433896:47434018:47434950:47435058,47433476:47433590:47433896:47434018:47435147:47435237,	47433897	47434018	47434006	47434006	Frame_Shift_Del	G	-	p.E175fs
LIHC	TCGA-G3-A3CJ-01	FNBP4	ENST00000263773.5	chr11	47738778:47739064:47741480:47741638:47744527:47744868,	47741481	47741638	47741598	47741598	Frame_Shift_Del	T	-	p.K949fs
LIHC	TCGA-G3-A3CJ-01	PTPRJ	ENST00000418331.2	chr11	48185009:48185170:48185931:48186067:48188755:48189670,	48185932	48186067	48186049	48186049	Frame_Shift_Del	T	-	p.P1279fs
LIHC	TCGA-G3-A3CJ-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49168302:49168497:49170190:49170283:49175397:49175461,	49170191	49170283	49170237	49170237	Frame_Shift_Del	T	-	p.R658fs
LIHC	TCGA-G3-A3CJ-01	FOLH1	ENST00000340334.7,ENST00000356696.3,ENST00000533034.1,ENST00000256999.2	chr11	49204700:49204794:49207220:49207407:49208195:49208320,	49207221	49207407	49207383	49207383	Frame_Shift_Del	C	-	p.A207fs
LIHC	TCGA-G3-A3CJ-01	FOLH1	ENST00000340334.7,ENST00000356696.3,ENST00000533034.1,ENST00000256999.2	chr11	49204700:49204794:49207220:49207407:49208195:49208320,	49207221	49207407	49207395	49207395	Frame_Shift_Del	G	-	p.Q203fs
LIHC	TCGA-G3-A3CJ-01	SLC43A1	ENST00000533515.1,ENST00000529452.1,ENST00000528450.1,ENST00000278426.3,ENST00000534298.1	chr11	57258775:57258835:57259063:57259099:57259188:57259236,	57259064	57259099	57259073	57259073	Frame_Shift_Del	C	-	p.A349fs
LIHC	TCGA-G3-A3CJ-01	CTNND1	ENST00000532787.1,ENST00000361332.4,ENST00000399050.4,ENST00000533667.1,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000527467.1,ENST00000360682.6,ENST00000415361.2,ENST00000526357.1,ENST00000532844.1,ENST00000531014.1	chr11	57582865:57582972:57583386:57583473:57583768:57584189,	57583387	57583473	57583433	57583433	Frame_Shift_Del	T	-	p.V952fs
LIHC	TCGA-G3-A3CJ-01	OSBP	ENST00000263847.1	chr11	59348923:59349027:59361076:59361197:59361482:59361728,	59361077	59361197	59361151	59361151	Frame_Shift_Del	T	-	p.N535fs
LIHC	TCGA-G3-A3CJ-01	PATL1	ENST00000300146.9	chr11	59422995:59423213:59423428:59423518:59423971:59424073,	59423429	59423518	59423461	59423461	Frame_Shift_Del	G	-	p.L261fs
LIHC	TCGA-G3-A3CJ-01	TCN1	ENST00000534531.1	chr11	59628999:59629155:59630054:59630195:59633864:59633944,	59630055	59630195	59630060	59630060	Frame_Shift_Del	T	-	p.N132fs
LIHC	TCGA-G3-A3CJ-01	TCN1	ENST00000257264.3,ENST00000532419.1	chr11	59630054:59630195:59631379:59631559:59633864:59633944,	59631380	59631559	59631544	59631544	Frame_Shift_Del	T	-	p.N32fs
LIHC	TCGA-G3-A3CJ-01	MS4A15	ENST00000429322.2	chr11	60524480:60524531:60535039:60535128:60538763:60538820,60531192:60531431:60535039:60535128:60538763:60538820,	60535040	60535128	60535107	60535107	Frame_Shift_Del	C	-	p.V109fs
LIHC	TCGA-G3-A3CJ-01	MS4A15	ENST00000405633.3	chr11	60531192:60531431:60535005:60535128:60538763:60538820,	60535006	60535128	60535107	60535107	Frame_Shift_Del	C	-	p.V109fs
LIHC	TCGA-G3-A3CJ-01	TMEM132A	ENST00000535480.1	chr11	60702789:60702915:60703335:60703488:60704218:60704631,	60703336	60703488	60703382	60703382	Frame_Shift_Del	C	-	p.A693fs
LIHC	TCGA-G3-A3CJ-01	CD5	ENST00000347785.3	chr11	60889082:60889376:60890378:60890504:60891355:60891409,	60890379	60890504	60890481	60890481	Frame_Shift_Del	C	-	p.A401fs
LIHC	TCGA-G3-A3CJ-01	CD5	ENST00000347785.3	chr11	60889082:60889376:60890378:60890504:60891355:60891409,	60890379	60890504	60890501	60890501	Frame_Shift_Del	A	-	p.K408fs
LIHC	TCGA-G3-A3CJ-01	DDB1	ENST00000540166.1,ENST00000539332.1,ENST00000450997.2,ENST00000301764.7	chr11	61071336:61071507:61076454:61076549:61077267:61077432,	61076455	61076549	61076488	61076488	Frame_Shift_Del	A	-	p.F876fs
LIHC	TCGA-G3-A3CJ-01	DDB1	ENST00000540166.1,ENST00000539332.1,ENST00000450997.2,ENST00000301764.7	chr11	61071336:61071507:61076454:61076549:61077267:61077432,	61076455	61076549	61076525	61076525	Frame_Shift_Del	T	-	p.K864fs
LIHC	TCGA-G3-A3CJ-01	DDB1	ENST00000540166.1,ENST00000539332.1,ENST00000450997.2,ENST00000301764.7	chr11	61076454:61076549:61077267:61077432:61077766:61077890,	61077268	61077432	61077328	61077328	Frame_Shift_Del	C	-	p.V836fs
LIHC	TCGA-G3-A3CJ-01	DDB1	ENST00000543162.1	chr11	61097429:61097546:61099014:61099163:61100379:61100480,61094250:61094365:61099014:61099163:61100379:61100480,	61099015	61099163	61099066	61099066	Frame_Shift_Del	T	-	p.K53fs
LIHC	TCGA-G3-A3CJ-01	CYB561A3	ENST00000294072.4,ENST00000537364.1,ENST00000536915.1,ENST00000426130.2,ENST00000447532.2,ENST00000542361.1	chr11	61120457:61120611:61121255:61121464:61129204:61129291,61120457:61120611:61121255:61121464:61124001:61124200,	61121256	61121464	61121409	61121409	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-G3-A3CJ-01	SYT7	ENST00000263846.4,ENST00000545053.1	chr11	61300460:61300596:61318855:61318935:61323575:61323679,	61318856	61318935	61318863	61318863	Frame_Shift_Del	C	-	p.A70fs
LIHC	TCGA-G3-A3CJ-01	DAGLA	ENST00000257215.5	chr11	61487583:61487722:61488150:61488362:61490330:61490432,	61488151	61488362	61488230	61488230	Frame_Shift_Del	G	-	p.G59fs
LIHC	TCGA-G3-A3CJ-01	DAGLA	ENST00000540717.1	chr11	61487583:61487722:61488150:61488339:61490330:61490432,	61488151	61488339	61488230	61488230	Frame_Shift_Del	G	-	p.G59fs
LIHC	TCGA-G3-A3CJ-01	MYRF	ENST00000278836.5,ENST00000265460.5	chr11	61536731:61536793:61537717:61537997:61538971:61539222,	61537718	61537997	61537888	61537888	Frame_Shift_Del	C	-	p.P212fs
LIHC	TCGA-G3-A3CJ-01	MYRF	ENST00000278836.5	chr11	61548628:61548801:61549044:61549296:61550984:61551017,61548609:61548801:61549044:61549296:61550969:61551072,	61549045	61549296	61549179	61549179	Frame_Shift_Del	G	-	p.G968fs
LIHC	TCGA-G3-A3CJ-01	FADS1	ENST00000460649.1,ENST00000542506.1,ENST00000433932.1,ENST00000536991.1,ENST00000350997.7	chr11	61569784:61569934:61570272:61570398:61570503:61570583,	61570273	61570398	61570352	61570352	Frame_Shift_Del	G	-	p.L459fs
LIHC	TCGA-G3-A3CJ-01	ASRGL1	ENST00000535727.1,ENST00000529226.1,ENST00000534183.1	chr11	62105465:62105639:62124458:62124616:62156604:62156637,	62124459	62124616	62124558	62124558	Frame_Shift_Del	A	-	p.K146fs
LIHC	TCGA-G3-A3CJ-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62394760:62394825:62396240:62396484:62396665:62396764,	62396241	62396484	62396260	62396260	Frame_Shift_Del	C	-	p.E743fs
LIHC	TCGA-G3-A3CJ-01	GANAB	ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62394760:62394825:62396240:62396484:62396665:62396764,	62396241	62396484	62396281	62396281	Frame_Shift_Del	G	-	p.L737fs
LIHC	TCGA-G3-A3CJ-01	GANAB	ENST00000534419.1,ENST00000346178.4,ENST00000356638.3	chr11	62406454:62406582:62406830:62406939:62407098:62407203,	62406831	62406939	62406916	62406916	Frame_Shift_Del	C	-	p.G56fs
LIHC	TCGA-G3-A3CJ-01	POLR2G	ENST00000301788.7,ENST00000527435.1,ENST00000533442.1	chr11	62529266:62529376:62530338:62530498:62532653:62532704,	62530339	62530498	62530460	62530460	Frame_Shift_Del	G	-	p.G82fs
LIHC	TCGA-G3-A3CJ-01	TAF6L	ENST00000524976.1,ENST00000294168.3	chr11	62546393:62546435:62549365:62549440:62549584:62549805,	62549366	62549440	62549402	62549402	Frame_Shift_Del	G	-	p.G190fs
LIHC	TCGA-G3-A3CJ-01	SLC22A8	ENST00000535878.1,ENST00000545207.1,ENST00000336232.2,ENST00000430500.2	chr11	62760708:62760808:62760895:62761099:62761241:62761350,	62760896	62761099	62760928	62760928	Frame_Shift_Del	G	-	p.P499fs
LIHC	TCGA-G3-A3CJ-01	SLC22A10	ENST00000332793.6	chr11	63066985:63067101:63069800:63070015:63071579:63071688,	63069801	63070015	63069989	63069989	Frame_Shift_Del	T	-	p.I420fs
LIHC	TCGA-G3-A3CJ-01	HRASLS5	ENST00000540857.1,ENST00000539221.1,ENST00000538712.1,ENST00000301790.4	chr11	63233631:63233844:63235828:63235937:63258358:63258411,63233631:63233844:63235828:63235937:63256342:63256448,	63235829	63235937	63235896	63235896	Frame_Shift_Del	A	-	p.F129fs
LIHC	TCGA-G3-A3CJ-01	RARRES3	ENST00000544107.1	chr11	63304316:63304349:63312071:63312361:63313620:63313797,	63312072	63312361	63312236	63312236	Frame_Shift_Del	C	-	p.P88fs
LIHC	TCGA-G3-A3CJ-01	PLA2G16	ENST00000323646.5,ENST00000415826.1,ENST00000394613.3	chr11	63342321:63342518:63357571:63357840:63365532:63365585,	63357572	63357840	63357685	63357685	Frame_Shift_Del	T	-	p.I93fs
LIHC	TCGA-G3-A3CJ-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63486282	63486282	Frame_Shift_Del	A	-	p.E103fs
LIHC	TCGA-G3-A3CJ-01	MACROD1	ENST00000542359.1,ENST00000255681.6	chr11	63782723:63782753:63918710:63918827:63919763:63919865,	63918711	63918827	63918768	63918768	Frame_Shift_Del	T	-	p.I154fs
LIHC	TCGA-G3-A3CJ-01	FERMT3	ENST00000279227.5,ENST00000345728.5	chr11	63987691:63987798:63987907:63988141:63988487:63988612,	63987908	63988141	63988107	63988107	Frame_Shift_Del	C	-	p.A508fs
LIHC	TCGA-G3-A3CJ-01	TRPT1	ENST00000317459.6,ENST00000541278.1,ENST00000394546.2,ENST00000546089.1,ENST00000545812.1	chr11	63992272:63992442:63992970:63993052:63993257:63993341,	63992971	63993052	63992987	63992987	Frame_Shift_Del	C	-	p.G47fs
LIHC	TCGA-G3-A3CJ-01	TRPT1	ENST00000539595.1,ENST00000536234.1,ENST00000539436.1	chr11	63992125:63992189:63992272:63993052:63993257:63993341,	63992273	63993052	63992987	63992987	Frame_Shift_Del	C	-	p.G47fs
LIHC	TCGA-G3-A3CJ-01	NUDT22	ENST00000279206.3	chr11	63994106:63994604:63995039:63995138:63996718:63996816,	63995040	63995138	63995106	63995106	Frame_Shift_Del	T	-	p.F183fs
LIHC	TCGA-G3-A3CJ-01	DNAJC4	ENST00000543791.1	chr11	63999433:63999436:63999865:64000086:64000175:64000184,	63999866	64000086	64000031	64000031	Frame_Shift_Del	C	-	p.P105fs
LIHC	TCGA-G3-A3CJ-01	DNAJC4	ENST00000538961.1,ENST00000321460.5	chr11	63999433:63999436:63999901:64000086:64000175:64000184,63999433:63999436:63999901:64000086:64000172:64000337,	63999902	64000086	64000031	64000031	Frame_Shift_Del	C	-	p.P105fs
LIHC	TCGA-G3-A3CJ-01	DNAJC4	ENST00000535246.1	chr11	63999433:63999436:63999981:64000086:64000175:64000184,	63999982	64000086	64000031	64000031	Frame_Shift_Del	C	-	p.P105fs
LIHC	TCGA-G3-A3CJ-01	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64112162	64112162	Frame_Shift_Del	G	-	p.G717fs
LIHC	TCGA-G3-A3CJ-01	CCDC88B	ENST00000359902.2,ENST00000356786.5,ENST00000301897.4	chr11	64117029:64117140:64118631:64118727:64118947:64119088,	64118632	64118727	64118705	64118705	Frame_Shift_Del	G	-	p.R979fs
LIHC	TCGA-G3-A3CJ-01	NAALADL1	ENST00000340252.4,ENST00000355369.2,ENST00000529274.1,ENST00000528977.1,ENST00000358658.3,ENST00000356632.3,ENST00000339885.2	chr11	64821926:64822210:64824842:64824965:64825346:64825468,	64824843	64824965	64824848	64824848	Frame_Shift_Del	C	-	p.A200fs
LIHC	TCGA-G3-A3CJ-01	NAALADL1	ENST00000340252.4,ENST00000355369.2,ENST00000529274.1,ENST00000528977.1,ENST00000358658.3,ENST00000356632.3,ENST00000339885.2	chr11	64821926:64822210:64824842:64824965:64825346:64825468,	64824843	64824965	64824862	64824862	Frame_Shift_Del	C	-	p.G195fs
LIHC	TCGA-G3-A3CJ-01	NAALADL1	ENST00000355721.3	chr11	64821926:64822210:64825346:64825468:64825549:64825722,	64825347	64825468	64825398	64825398	Frame_Shift_Del	C	-	p.G143fs
LIHC	TCGA-G3-A3CJ-01	NAALADL1	ENST00000355721.3	chr11	64821926:64822210:64825346:64825468:64825549:64825722,	64825347	64825468	64825461	64825461	Frame_Shift_Del	G	-	p.P122fs
LIHC	TCGA-G3-A3CJ-01	VPS51	ENST00000527646.1,ENST00000526856.1,ENST00000279281.3	chr11	64876815:64876967:64877176:64877395:64877953:64878075,	64877177	64877395	64877195	64877195	Frame_Shift_Del	C	-	p.P560fs
LIHC	TCGA-G3-A3CJ-01	MRPL49	ENST00000526171.1,ENST00000526319.1,ENST00000279242.2	chr11	64889807:64889896:64891973:64892124:64892959:64893084,	64891974	64892124	64892000	64892000	Frame_Shift_Del	C	-	p.Y35fs
LIHC	TCGA-G3-A3CJ-01	SYVN1	ENST00000529207.1	chr11	64898940:64899067:64899718:64899822:64900202:64900251,64898940:64899067:64899718:64899822:64900392:64900545,	64899719	64899822	64899748	64899748	Frame_Shift_Del	C	-	p.A168fs
LIHC	TCGA-G3-A3CJ-01	SYVN1	ENST00000449943.1	chr11	64898940:64899067:64899718:64900251:64900392:64900545,	64899719	64900251	64899748	64899748	Frame_Shift_Del	C	-	p.A168fs
LIHC	TCGA-G3-A3CJ-01	SYVN1	ENST00000527142.1	chr11	64898940:64899067:64899718:64899779:64900202:64900251,	64899719	64899779	64899748	64899748	Frame_Shift_Del	C	-	p.A168fs
LIHC	TCGA-G3-A3CJ-01	DPF2	ENST00000444314.2,ENST00000415073.2,ENST00000252268.4,ENST00000532102.1	chr11	65101347:65101389:65107855:65108016:65108436:65108544,	65107856	65108016	65107860	65107860	Frame_Shift_Del	G	-	p.G13fs
LIHC	TCGA-G3-A3CJ-01	SLC25A45	ENST00000294187.6,ENST00000524438.1,ENST00000533629.1,ENST00000530936.1,ENST00000398802.1,ENST00000525944.1,ENST00000527174.1,ENST00000526259.1,ENST00000417511.2,ENST00000529962.1,ENST00000526898.1	chr11	65146928:65147032:65147337:65147409:65147602:65147646,	65147338	65147409	65147352	65147352	Frame_Shift_Del	A	-	p.Y5fs
LIHC	TCGA-G3-A3CJ-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1,ENST00000529189.1	chr11	65310597:65310695:65310897:65311020:65313912:65314035,	65310898	65311020	65310960	65310960	Frame_Shift_Del	C	-	p.G805fs
LIHC	TCGA-G3-A3CJ-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65350199	65350199	Frame_Shift_Del	G	-	p.G686fs
LIHC	TCGA-G3-A3CJ-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65350496	65350496	Frame_Shift_Del	G	-	p.G785fs
LIHC	TCGA-G3-A3CJ-01	MAP3K11	ENST00000530153.1,ENST00000309100.3,ENST00000532507.1	chr11	65365226:65366099:65366864:65367239:65373231:65373323,	65366865	65367239	65366937	65366937	Frame_Shift_Del	G	-	p.L714fs
LIHC	TCGA-G3-A3CJ-01	RELA	ENST00000525301.1,ENST00000529389.1,ENST00000527749.1,ENST00000406246.3,ENST00000527874.1,ENST00000532879.1,ENST00000525858.1,ENST00000533187.1,ENST00000527074.1,ENST00000308639.9,ENST00000525693.1,ENST00000526283.2	chr11	65429157:65429306:65429407:65429559:65429649:65429676,	65429408	65429559	65429474	65429474	Frame_Shift_Del	C	-	p.G40fs
LIHC	TCGA-G3-A3CJ-01	CFL1	ENST00000532134.1,ENST00000525451.2,ENST00000527344.1,ENST00000531407.1,ENST00000534769.1,ENST00000530413.1,ENST00000531413.1,ENST00000308162.5,ENST00000524553.1	chr11	65622888:65622919:65623124:65623201:65623405:65623425,	65623125	65623201	65623195	65623195	Frame_Shift_Del	G	-	p.P106fs
LIHC	TCGA-G3-A3CJ-01	EFEMP2	ENST00000524408.1	chr11	65634035:65634183:65634336:65634550:65635331:65635377,	65634337	65634550	65634464	65634464	Frame_Shift_Del	G	-	p.T419fs
LIHC	TCGA-G3-A3CJ-01	EFEMP2	ENST00000531972.1	chr11	65634035:65634183:65634315:65634550:65635331:65635377,	65634316	65634550	65634464	65634464	Frame_Shift_Del	G	-	p.T419fs
LIHC	TCGA-G3-A3CJ-01	EFEMP2	ENST00000526628.1	chr11	65634035:65634183:65634280:65634550:65635331:65635377,	65634281	65634550	65634464	65634464	Frame_Shift_Del	G	-	p.T419fs
LIHC	TCGA-G3-A3CJ-01	EFEMP2	ENST00000533347.1	chr11	65638006:65638129:65638627:65638880:65639440:65639489,	65638628	65638880	65638705	65638705	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-G3-A3CJ-01	EFEMP2	ENST00000531972.1,ENST00000307998.6,ENST00000527378.1,ENST00000528176.1,ENST00000526624.1	chr11	65638006:65638129:65638627:65638834:65639440:65639489,	65638628	65638834	65638705	65638705	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-G3-A3CJ-01	EFEMP2	ENST00000533347.1	chr11	65638006:65638129:65638627:65638880:65639440:65639489,	65638628	65638880	65638765	65638765	Frame_Shift_Del	C	-	p.G77fs
LIHC	TCGA-G3-A3CJ-01	EFEMP2	ENST00000531972.1,ENST00000307998.6,ENST00000527378.1,ENST00000528176.1,ENST00000526624.1	chr11	65638006:65638129:65638627:65638834:65639440:65639489,	65638628	65638834	65638765	65638765	Frame_Shift_Del	C	-	p.G77fs
LIHC	TCGA-G3-A3CJ-01	DRAP1	ENST00000312515.2,ENST00000531121.1,ENST00000527119.1,ENST00000532933.1	chr11	65687477:65687512:65687813:65687933:65688039:65688133,	65687814	65687933	65687875	65687875	Frame_Shift_Del	C	-	p.P91fs
LIHC	TCGA-G3-A3CJ-01	SF3B2	ENST00000530981.1,ENST00000528302.1,ENST00000322535.6	chr11	65829156:65829246:65829361:65829469:65830479:65830587,	65829362	65829469	65829446	65829446	Frame_Shift_Del	G	-	p.G635fs
LIHC	TCGA-G3-A3CJ-01	KLC2	ENST00000440228.2,ENST00000475757.2,ENST00000394078.1,ENST00000394067.2,ENST00000316924.5,ENST00000417856.1	chr11	66026054:66026293:66029212:66029443:66029593:66029632,	66029213	66029443	66029239	66029239	Frame_Shift_Del	G	-	p.L85fs
LIHC	TCGA-G3-A3CJ-01	KLC2	ENST00000421552.1,ENST00000461611.1,ENST00000394066.2	chr11	66026054:66026293:66029593:66029663:66030284:66030507,	66029594	66029663	66029602	66029602	Frame_Shift_Del	G	-	p.K17fs
LIHC	TCGA-G3-A3CJ-01	KLC2	ENST00000421552.1,ENST00000461611.1,ENST00000394066.2	chr11	66026054:66026293:66029593:66029663:66030284:66030507,	66029594	66029663	66029611	66029611	Frame_Shift_Del	C	-	p.V20fs
LIHC	TCGA-G3-A3CJ-01	RIN1	ENST00000424433.2,ENST00000530745.1	chr11	66103080:66103153:66103232:66103347:66103448:66103479,66103080:66103153:66103232:66103347:66103787:66103877,	66103233	66103347	66103273	66103273	Frame_Shift_Del	G	-	p.P114fs
LIHC	TCGA-G3-A3CJ-01	BRMS1	ENST00000425825.2	chr11	66105344:66105360:66105713:66105753:66106191:66106256,66104803:66105278:66105713:66105753:66106191:66106256,	66105714	66105753	66105721	66105721	Frame_Shift_Del	T	-	p.K242fs
LIHC	TCGA-G3-A3CJ-01	RBM4B	ENST00000310046.4	chr11	66433018:66433049:66436085:66436762:66444138:66444562,	66436086	66436762	66436271	66436271	Frame_Shift_Del	C	-	p.D302fs
LIHC	TCGA-G3-A3CJ-01	RBM4B	ENST00000310046.4	chr11	66433018:66433049:66436085:66436762:66444138:66444562,	66436086	66436762	66436668	66436668	Frame_Shift_Del	C	-	p.G169fs
LIHC	TCGA-G3-A3CJ-01	PC	ENST00000393960.1,ENST00000393955.2,ENST00000393958.2	chr11	66617407:66617587:66617690:66617935:66618144:66618394,	66617691	66617935	66617803	66617803	Frame_Shift_Del	C	-	p.G869fs
LIHC	TCGA-G3-A3CJ-01	PPP1CA	ENST00000376745.4,ENST00000537694.1,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67167031:67167136:67168159:67168390:67168538:67168670,	67168160	67168390	67168350	67168350	Frame_Shift_Del	A	-	p.F76fs
LIHC	TCGA-G3-A3CJ-01	TBC1D10C	ENST00000312390.5,ENST00000542590.1,ENST00000529635.1,ENST00000533745.1	chr11	67173065:67173172:67173373:67173488:67174097:67174132,	67173374	67173488	67173446	67173446	Frame_Shift_Del	G	-	p.Q180fs
LIHC	TCGA-G3-A3CJ-01	TBC1D10C	ENST00000526387.1,ENST00000530967.2	chr11	67173065:67173172:67173377:67173488:67174097:67174132,	67173378	67173488	67173446	67173446	Frame_Shift_Del	G	-	p.Q180fs
LIHC	TCGA-G3-A3CJ-01	CORO1B	ENST00000393893.1,ENST00000341356.5	chr11	67207701:67207734:67207805:67207910:67208595:67208715,	67207806	67207910	67207886	67207886	Frame_Shift_Del	G	-	p.L261fs
LIHC	TCGA-G3-A3CJ-01	CABP4	ENST00000325656.5,ENST00000438189.2	chr11	67223658:67223689:67223769:67223913:67225043:67225120,	67223770	67223913	67223865	67223865	Frame_Shift_Del	C	-	p.P60fs
LIHC	TCGA-G3-A3CJ-01	CABP4	ENST00000545777.1	chr11	67223658:67223689:67223769:67223888:67225043:67225120,	67223770	67223888	67223865	67223865	Frame_Shift_Del	C	-	p.P60fs
LIHC	TCGA-G3-A3CJ-01	PITPNM1	ENST00000534749.1,ENST00000356404.3	chr11	67263648:67263816:67264701:67264907:67264992:67265150,67263648:67263819:67264701:67264907:67264992:67265150,	67264702	67264907	67264708	67264708	Frame_Shift_Del	G	-	p.L714fs
LIHC	TCGA-G3-A3CJ-01	TCIRG1	ENST00000533947.1	chr11	67810109:67810330:67810412:67810964:67811037:67811057,	67810413	67810964	67810470	67810470	Frame_Shift_Del	G	-	p.G160fs
LIHC	TCGA-G3-A3CJ-01	TCIRG1	ENST00000534673.1	chr11	67810109:67810330:67810412:67810498:67811037:67811057,	67810413	67810498	67810470	67810470	Frame_Shift_Del	G	-	p.G160fs
LIHC	TCGA-G3-A3CJ-01	TCIRG1	ENST00000533005.1,ENST00000532635.1,ENST00000525724.1,ENST00000265686.3	chr11	67817519:67817533:67817603:67817721:67818207:67818288,67817519:67817533:67817603:67817721:67817953:67818131,	67817604	67817721	67817660	67817660	Frame_Shift_Del	G	-	p.L725fs
LIHC	TCGA-G3-A3CJ-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68115314:68115711:68125117:68125315:68131214:68131383,	68125118	68125315	68125167	68125167	Frame_Shift_Del	G	-	p.G180fs
LIHC	TCGA-G3-A3CJ-01	LRP5	ENST00000294304.7	chr11	68153783:68154180:68157348:68157520:68170950:68171167,	68157349	68157520	68157383	68157383	Frame_Shift_Del	A	-	p.K483fs
LIHC	TCGA-G3-A3CJ-01	IGHMBP2	ENST00000539224.1	chr11	68671393:68671506:68673536:68673706:68675612:68675660,	68673537	68673706	68673622	68673622	Frame_Shift_Del	G	-	p.G58fs
LIHC	TCGA-G3-A3CJ-01	IGHMBP2	ENST00000545146.1	chr11	68671393:68671506:68673536:68673852:68675612:68675660,	68673537	68673852	68673622	68673622	Frame_Shift_Del	G	-	p.G58fs
LIHC	TCGA-G3-A3CJ-01	IGHMBP2	ENST00000543739.1,ENST00000539064.1,ENST00000255078.3	chr11	68700766:68700949:68701262:68701381:68701931:68702026,	68701263	68701381	68701375	68701375	Frame_Shift_Del	A	-	p.N511fs
LIHC	TCGA-G3-A3CJ-01	TPCN2	ENST00000535009.1	chr11	68821500:68821565:68825045:68825162:68830351:68830458,	68825046	68825162	68825076	68825076	Frame_Shift_Del	A	-	p.K154fs
LIHC	TCGA-G3-A3CJ-01	ANO1	ENST00000531349.1,ENST00000398543.2,ENST00000355303.5,ENST00000538023.1,ENST00000525494.1,ENST00000530676.1	chr11	70028607:70028792:70031695:70031801:70033843:70034172,	70031696	70031801	70031758	70031758	Frame_Shift_Del	G	-	p.W884fs
LIHC	TCGA-G3-A3CJ-01	ANO1	ENST00000531349.1,ENST00000398543.2,ENST00000355303.5,ENST00000538023.1,ENST00000525494.1,ENST00000530676.1	chr11	70028607:70028792:70031695:70031801:70033843:70034172,	70031696	70031801	70031773	70031773	Frame_Shift_Del	C	-	p.A889fs
LIHC	TCGA-G3-A3CJ-01	PPFIA1	ENST00000527612.1,ENST00000528750.1,ENST00000526262.1,ENST00000389547.3,ENST00000532504.1,ENST00000253925.7,ENST00000530390.1	chr11	70201744:70201917:70202266:70202360:70208200:70208281,	70202267	70202360	70202354	70202354	Frame_Shift_Del	A	-	p.Q859fs
LIHC	TCGA-G3-A3CJ-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71724008	71724008	Frame_Shift_Del	C	-	p.G1514fs
LIHC	TCGA-G3-A3CJ-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71725383	71725383	Frame_Shift_Del	G	-	p.L1056fs
LIHC	TCGA-G3-A3CJ-01	ANAPC15	ENST00000545944.1	chr11	71821635:71821649:71822202:71822332:71823695:71823732,	71822203	71822332	71822305	71822305	Frame_Shift_Del	G	-	p.P6fs
LIHC	TCGA-G3-A3CJ-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72422474:72422544:72423240:72423384:72423482:72423613,	72423241	72423384	72423310	72423310	Frame_Shift_Del	G	-	p.P319fs
LIHC	TCGA-G3-A3CJ-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72422474:72422544:72423240:72423384:72423482:72423613,	72423241	72423384	72423321	72423321	Frame_Shift_Del	G	-	p.P314fs
LIHC	TCGA-G3-A3CJ-01	ARAP1	ENST00000359373.5,ENST00000393609.3	chr11	72425196:72425366:72437664:72438217:72443559:72443642,	72437665	72438217	72437943	72437943	Frame_Shift_Del	G	-	p.P77fs
LIHC	TCGA-G3-A3CJ-01	FCHSD2	ENST00000409314.1,ENST00000311172.7,ENST00000409853.1,ENST00000458644.2,ENST00000409418.4	chr11	72578909:72579071:72598514:72598619:72600873:72600990,	72598515	72598619	72598571	72598571	Frame_Shift_Del	G	-	p.R388fs
LIHC	TCGA-G3-A3CJ-01	FAM168A	ENST00000450446.2	chr11	73117027:73117789:73118557:73118688:73120531:73120706,73117027:73117789:73118557:73118688:73130918:73131044,	73118558	73118688	73118586	73118586	Frame_Shift_Del	G	-	p.P242fs
LIHC	TCGA-G3-A3CJ-01	FAM168A	ENST00000450446.2	chr11	73117027:73117789:73118557:73118688:73120531:73120706,73117027:73117789:73118557:73118688:73130918:73131044,	73118558	73118688	73118668	73118668	Frame_Shift_Del	G	-	p.Q215fs
LIHC	TCGA-G3-A3CJ-01	C2CD3	ENST00000313663.7,ENST00000334126.7,ENST00000414160.2	chr11	73795925:73796015:73796662:73796931:73801857:73801922,	73796663	73796931	73796691	73796691	Frame_Shift_Del	A	-	p.F1294fs
LIHC	TCGA-G3-A3CJ-01	C2CD3	ENST00000313663.7,ENST00000537285.1,ENST00000334126.7	chr11	73811653:73811721:73814175:73814670:73817415:73817538,	73814176	73814670	73814458	73814458	Frame_Shift_Del	G	-	p.P766fs
LIHC	TCGA-G3-A3CJ-01	PPME1	ENST00000398427.4	chr11	73950177:73950301:73957078:73957250:73958123:73958168,	73957079	73957250	73957211	73957211	Frame_Shift_Del	T	-	p.F309fs
LIHC	TCGA-G3-A3CJ-01	PPME1	ENST00000538501.1,ENST00000535205.1,ENST00000328257.8,ENST00000543525.1,ENST00000541340.1	chr11	73950177:73950301:73957120:73957250:73958123:73958168,	73957121	73957250	73957211	73957211	Frame_Shift_Del	T	-	p.F309fs
LIHC	TCGA-G3-A3CJ-01	XRRA1	ENST00000321448.8	chr11	74570211:74570328:74574025:74574066:74617283:74617397,74563078:74563127:74574025:74574066:74617283:74617397,	74574026	74574066	74574037	74574037	Frame_Shift_Del	A	-	p.S337fs
LIHC	TCGA-G3-A3CJ-01	XRRA1	ENST00000321448.8	chr11	74570211:74570328:74574025:74574066:74617283:74617397,74563078:74563127:74574025:74574066:74617283:74617397,	74574026	74574066	74574055	74574055	Frame_Shift_Del	A	-	p.S332fs
LIHC	TCGA-G3-A3CJ-01	NEU3	ENST00000531619.1	chr11	74700062:74700199:74705553:74705765:74716457:74716514,74700062:74700199:74705553:74705765:74715349:74715450,	74705554	74705765	74705655	74705655	Frame_Shift_Del	C	-	p.P67fs
LIHC	TCGA-G3-A3CJ-01	UVRAG	ENST00000356136.3,ENST00000528420.1,ENST00000528264.1	chr11	75590922:75591084:75599872:75599947:75622997:75623083,	75599873	75599947	75599912	75599912	Frame_Shift_Del	A	-	p.N158fs
LIHC	TCGA-G3-A3CJ-01	UVRAG	ENST00000356136.3,ENST00000528420.1,ENST00000532130.1,ENST00000531818.1	chr11	75719850:75719911:75727858:75728024:75776753:75776832,	75727859	75728024	75727956	75727956	Frame_Shift_Del	A	-	p.I387fs
LIHC	TCGA-G3-A3CJ-01	PAK1	ENST00000530617.1	chr11	77090961:77091039:77103375:77103586:77184596:77184780,77090961:77091039:77103375:77103586:77122818:77122949,	77103376	77103586	77103417	77103417	Frame_Shift_Del	T	-	p.K51fs
LIHC	TCGA-G3-A3CJ-01	AQP11	ENST00000528638.1,ENST00000313578.3	chr11	77301573:77301656:77314600:77314717:77320342:77321054,	77314601	77314717	77314635	77314635	Frame_Shift_Del	T	-	p.A218fs
LIHC	TCGA-G3-A3CJ-01	CLNS1A	ENST00000532069.1	chr11	77330650:77330740:77333544:77333718:77336007:77336076,77330650:77330740:77333544:77333718:77340807:77340944,	77333545	77333718	77333659	77333659	Frame_Shift_Del	T	-	p.T178fs
LIHC	TCGA-G3-A3CJ-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412229	77412229	Frame_Shift_Del	T	-	p.N682fs
LIHC	TCGA-G3-A3CJ-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412538	77412538	Frame_Shift_Del	G	-	p.P580fs
LIHC	TCGA-G3-A3CJ-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77413147	77413147	Frame_Shift_Del	T	-	p.N376fs
LIHC	TCGA-G3-A3CJ-01	RSF1	ENST00000308488.6,ENST00000528095.1,ENST00000360355.2	chr11	77413445:77413540:77436589:77436744:77451775:77451981,	77436590	77436744	77436612	77436612	Frame_Shift_Del	T	-	p.K237fs
LIHC	TCGA-G3-A3CJ-01	AAMDC	ENST00000393427.2,ENST00000526164.1	chr11	77532200:77532287:77553524:77553674:77580767:77580863,	77553525	77553674	77553633	77553633	Frame_Shift_Del	G	-	p.G32fs
LIHC	TCGA-G3-A3CJ-01	USP35	ENST00000530546.1,ENST00000529308.1,ENST00000526425.1,ENST00000441408.2,ENST00000528910.1	chr11	77911178:77911280:77911695:77911854:77916887:77917081,	77911696	77911854	77911752	77911752	Frame_Shift_Del	G	-	p.S365fs
LIHC	TCGA-G3-A3CJ-01	TENM4	ENST00000278550.7	chr11	78437123:78437267:78440420:78440688:78443360:78443622,	78440421	78440688	78440578	78440578	Frame_Shift_Del	G	-	p.T1083fs
LIHC	TCGA-G3-A3CJ-01	PCF11	ENST00000298281.4	chr11	82879469:82881037:82882859:82882956:82888126:82888246,	82882860	82882956	82882908	82882908	Frame_Shift_Del	T	-	p.F1237fs
LIHC	TCGA-G3-A3CJ-01	EED	ENST00000263360.6,ENST00000528180.1,ENST00000327320.4,ENST00000525244.1,ENST00000351625.6	chr11	85967428:85967554:85968556:85968638:85975213:85975305,	85968557	85968638	85968598	85968598	Frame_Shift_Del	C	-	p.F198fs
LIHC	TCGA-G3-A3CJ-01	EED	ENST00000263360.6,ENST00000327320.4,ENST00000525244.1,ENST00000533228.1,ENST00000351625.6	chr11	85975213:85975305:85977124:85977258:85979497:85979572,	85977125	85977258	85977144	85977144	Frame_Shift_Del	A	-	p.E249fs
LIHC	TCGA-G3-A3CJ-01	TMEM135	ENST00000535167.1	chr11	86802403:86802437:86868382:86868448:86947679:86947726,86782564:86782657:86868382:86868448:86947679:86947726,	86868383	86868448	86868423	86868423	Frame_Shift_Del	C	-	p.T146fs
LIHC	TCGA-G3-A3CJ-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000305494.5	chr11	86868382:86868448:86947679:86947726:87006823:87006865,	86947680	86947726	86947719	86947719	Frame_Shift_Del	T	-	p.F147fs
LIHC	TCGA-G3-A3CJ-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87013337:87013484:87016977:87017047:87020546:87020714,	87016978	87017047	87017045	87017045	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-G3-A3CJ-01	NOX4	ENST00000534731.1,ENST00000527956.1,ENST00000542487.1,ENST00000424319.1,ENST00000528341.1,ENST00000525278.1,ENST00000529343.1,ENST00000263317.4,ENST00000525196.1,ENST00000413594.2,ENST00000532825.1,ENST00000343727.5,ENST00000535633.1	chr11	89177302:89177400:89182607:89182692:89184952:89185010,	89182608	89182692	89182656	89182656	Frame_Shift_Del	T	-	p.S77fs
LIHC	TCGA-G3-A3CJ-01	FAT3	ENST00000525166.1,ENST00000298047.6,ENST00000409404.2	chr11	92523108:92523384:92525932:92526143:92531001:92535075,	92525933	92526143	92526047	92526047	Frame_Shift_Del	T	-	p.F1576fs
LIHC	TCGA-G3-A3CJ-01	SLC36A4	ENST00000534116.1,ENST00000529184.1,ENST00000326402.4	chr11	92899083:92899182:92901109:92901337:92913962:92914047,	92901110	92901337	92901154	92901154	Frame_Shift_Del	A	-	p.S242fs
LIHC	TCGA-G3-A3CJ-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471398	93471398	Frame_Shift_Del	C	-	p.R113fs
LIHC	TCGA-G3-A3CJ-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471398	93471398	Frame_Shift_Del	C	-	p.R113fs
LIHC	TCGA-G3-A3CJ-01	CEP57	ENST00000325542.5,ENST00000538658.1,ENST00000541365.1,ENST00000544522.1,ENST00000541150.1,ENST00000325486.5,ENST00000537677.1	chr11	95532400:95532552:95546095:95546275:95546631:95546684,	95546096	95546275	95546116	95546116	Frame_Shift_Del	A	-	p.N75fs
LIHC	TCGA-G3-A3CJ-01	CEP57	ENST00000539855.1	chr11	95532400:95532552:95546067:95546275:95546631:95546684,	95546068	95546275	95546116	95546116	Frame_Shift_Del	A	-	p.N75fs
LIHC	TCGA-G3-A3CJ-01	CEP57	ENST00000540830.1	chr11	95532395:95532552:95546115:95546275:95546631:95546684,	95546116	95546275	95546116	95546116	Frame_Shift_Del	A	-	p.N75fs
LIHC	TCGA-G3-A3CJ-01	CCDC82	ENST00000278520.5,ENST00000542662.1	chr11	96116432:96116637:96117125:96117925:96119417:96119457,	96117126	96117925	96117235	96117235	Frame_Shift_Del	T	-	p.K226fs
LIHC	TCGA-G3-A3CJ-01	ANGPTL5	ENST00000534527.1	chr11	101771160:101771281:101776474:101776578:101777833:101777978,	101776475	101776578	101776532	101776532	Frame_Shift_Del	T	-	p.K96fs
LIHC	TCGA-G3-A3CJ-01	BIRC2	ENST00000532672.1	chr11	102219328:102219495:102220608:102221480:102221574:102221674,	102220609	102221480	102220695	102220695	Frame_Shift_Del	A	-	p.Q37fs
LIHC	TCGA-G3-A3CJ-01	BIRC2	ENST00000227758.2	chr11	102217999:102218107:102219328:102221480:102221574:102221674,	102219329	102221480	102220695	102220695	Frame_Shift_Del	A	-	p.Q37fs
LIHC	TCGA-G3-A3CJ-01	BIRC2	ENST00000532672.1	chr11	102219328:102219495:102220608:102221480:102221574:102221674,	102220609	102221480	102220987	102220987	Frame_Shift_Del	T	-	p.S134fs
LIHC	TCGA-G3-A3CJ-01	BIRC2	ENST00000227758.2	chr11	102217999:102218107:102219328:102221480:102221574:102221674,	102219329	102221480	102220987	102220987	Frame_Shift_Del	T	-	p.S134fs
LIHC	TCGA-G3-A3CJ-01	BIRC2	ENST00000530675.1	chr11	102217999:102218107:102220731:102221480:102221574:102221674,	102220732	102221480	102220987	102220987	Frame_Shift_Del	T	-	p.S134fs
LIHC	TCGA-G3-A3CJ-01	BIRC2	ENST00000527910.1,ENST00000533742.1,ENST00000530675.1,ENST00000532672.1,ENST00000227758.2,ENST00000534130.1	chr11	102234398:102234447:102239036:102239279:102248226:102248328,	102239037	102239279	102239232	102239232	Frame_Shift_Del	A	-	p.E440fs
LIHC	TCGA-G3-A3CJ-01	DCUN1D5	ENST00000529281.1,ENST00000260247.5,ENST00000531571.1,ENST00000527260.1,ENST00000525420.1	chr11	102937216:102937296:102953476:102953568:102953984:102954055,	102953477	102953568	102953522	102953522	Frame_Shift_Del	C	-	p.G99fs
LIHC	TCGA-G3-A3CJ-01	CASP4	ENST00000529183.1	chr11	104820387:104820504:104825473:104825728:104839245:104839274,	104825474	104825728	104825505	104825505	Frame_Shift_Del	A	-	p.F77fs
LIHC	TCGA-G3-A3CJ-01	GRIA4	ENST00000533094.1	chr11	105804667:105804695:105836673:105836788:105842640:105842755,105804667:105804695:105836673:105836788:105845036:105845157,105816189:105816228:105836673:105836788:105845036:105845157,	105836674	105836788	105836732	105836732	Frame_Shift_Del	A	-	p.K785fs
LIHC	TCGA-G3-A3CJ-01	CWF19L2	ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107224249:107224462:107260799:107260937:107263504:107263621,	107260800	107260937	107260852	107260852	Frame_Shift_Del	T	-	p.K607fs
LIHC	TCGA-G3-A3CJ-01	ALKBH8	ENST00000428149.2,ENST00000417449.2,ENST00000389568.3	chr11	107381612:107381762:107393024:107393281:107396166:107396318,	107393025	107393281	107393238	107393238	Frame_Shift_Del	G	-	p.P358fs
LIHC	TCGA-G3-A3CJ-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107904527:107904637:107916996:107917096:107920616:107920793,	107916997	107917096	107917039	107917039	Frame_Shift_Del	A	-	p.A59fs
LIHC	TCGA-G3-A3CJ-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107904527:107904637:107916996:107917096:107920616:107920793,	107916997	107917096	107917057	107917057	Frame_Shift_Del	A	-	p.L65fs
LIHC	TCGA-G3-A3CJ-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107916996:107917096:107920616:107920793:107923386:107923528,	107920617	107920793	107920758	107920758	Frame_Shift_Del	A	-	p.K127fs
LIHC	TCGA-G3-A3CJ-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107968362:107968481:107969132:107969256:107974916:107975629,	107969133	107969256	107969156	107969156	Frame_Shift_Del	G	-	p.R683fs
LIHC	TCGA-G3-A3CJ-01	NPAT	ENST00000530859.1,ENST00000278612.8	chr11	108029519:108029746:108031606:108032741:108032846:108032892,	108031607	108032741	108031979	108031979	Frame_Shift_Del	T	-	p.K1278fs
LIHC	TCGA-G3-A3CJ-01	NPAT	ENST00000610253.1,ENST00000278612.8	chr11	108056129:108056221:108057208:108057296:108058824:108058906,	108057209	108057296	108057280	108057280	Frame_Shift_Del	T	-	p.S219fs
LIHC	TCGA-G3-A3CJ-01	KDELC2	ENST00000375648.1,ENST00000323468.5,ENST00000434945.2,ENST00000530529.1	chr11	108351906:108352103:108352732:108352949:108356883:108356964,	108352733	108352949	108352887	108352887	Frame_Shift_Del	T	-	p.K193fs
LIHC	TCGA-G3-A3CJ-01	EXPH5	ENST00000525344.1	chr11	108409750:108409913:108412378:108412539:108464144:108464231,	108412379	108412539	108412422	108412422	Frame_Shift_Del	T	-	p.K79fs
LIHC	TCGA-G3-A3CJ-01	RDX	ENST00000530301.1	chr11	110128903:110128914:110134684:110134959:110143260:110143344,	110134685	110134959	110134778	110134778	Frame_Shift_Del	A	-	p.L125fs
LIHC	TCGA-G3-A3CJ-01	RDX	ENST00000530301.1	chr11	110128903:110128914:110134684:110134959:110143260:110143344,	110134685	110134959	110134791	110134791	Frame_Shift_Del	T	-	p.T121fs
LIHC	TCGA-G3-A3CJ-01	RDX	ENST00000530301.1	chr11	110128903:110128914:110134684:110134959:110143260:110143344,	110134685	110134959	110134912	110134912	Frame_Shift_Del	A	-	p.F80fs
LIHC	TCGA-G3-A3CJ-01	RDX	ENST00000528498.1,ENST00000528556.1,ENST00000530749.1,ENST00000533991.1,ENST00000343115.4,ENST00000405097.1,ENST00000532118.1	chr11	110134769:110134959:110135503:110135599:110143260:110143344,	110135504	110135599	110135561	110135561	Frame_Shift_Del	A	-	p.F45fs
LIHC	TCGA-G3-A3CJ-01	SIK2	ENST00000304987.3	chr11	111486966:111487083:111491062:111491126:111558724:111558886,	111491063	111491126	111491075	111491075	Frame_Shift_Del	A	-	p.K89fs
LIHC	TCGA-G3-A3CJ-01	DIXDC1	ENST00000530411.1,ENST00000315253.5	chr11	111848032:111848519:111851461:111851574:111853063:111853104,	111851462	111851574	111851534	111851534	Frame_Shift_Del	T	-	p.D243fs
LIHC	TCGA-G3-A3CJ-01	PIH1D2	ENST00000431456.1,ENST00000532211.1,ENST00000530641.1,ENST00000525744.1,ENST00000280350.4	chr11	111941855:111942007:111942358:111942482:111943721:111943793,	111942359	111942482	111942459	111942459	Frame_Shift_Del	A	-	p.F67fs
LIHC	TCGA-G3-A3CJ-01	PIH1D2	ENST00000431456.1,ENST00000532211.1,ENST00000530641.1,ENST00000525744.1,ENST00000280350.4	chr11	111941855:111942007:111942358:111942482:111943721:111943793,	111942359	111942482	111942467	111942467	Frame_Shift_Del	T	-	p.I65fs
LIHC	TCGA-G3-A3CJ-01	TMPRSS5	ENST00000538955.1,ENST00000544634.1,ENST00000540540.1,ENST00000299882.5,ENST00000545579.1,ENST00000544476.1	chr11	113560486:113560639:113560952:113561095:113561562:113561661,	113560953	113561095	113561000	113561000	Frame_Shift_Del	G	-	p.R387fs
LIHC	TCGA-G3-A3CJ-01	USP28	ENST00000535607.1	chr11	113699942:113700067:113701588:113701668:113704141:113704192,	113701589	113701668	113701642	113701642	Frame_Shift_Del	T	-	p.N286fs
LIHC	TCGA-G3-A3CJ-01	USP28	ENST00000545608.1	chr11	113699942:113700067:113701588:113701665:113704141:113704192,	113701589	113701665	113701642	113701642	Frame_Shift_Del	T	-	p.N286fs
LIHC	TCGA-G3-A3CJ-01	NNMT	ENST00000535401.1	chr11	114133609:114133656:114167149:114167432:114168672:114168880,	114167150	114167432	114167405	114167405	Frame_Shift_Del	A	-	p.K43fs
LIHC	TCGA-G3-A3CJ-01	NXPE1	ENST00000536312.1	chr11	114399517:114399554:114400896:114401630:114421824:114421923,	114400897	114401630	114401175	114401175	Frame_Shift_Del	G	-	p.P185fs
LIHC	TCGA-G3-A3CJ-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116627861:116627943:116628481:116628666:116628984:116629123,	116628482	116628666	116628539	116628539	Frame_Shift_Del	C	-	p.D543fs
LIHC	TCGA-G3-A3CJ-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116628481:116628666:116628984:116629123:116629789:116629895,	116628985	116629123	116628991	116628991	Frame_Shift_Del	C	-	p.G498fs
LIHC	TCGA-G3-A3CJ-01	APOA5	ENST00000433069.1	chr11	116662301:116662413:116662527:116662584:116663095:116663127,	116662528	116662584	116662531	116662531	Frame_Shift_Del	A	-	p.S16fs
LIHC	TCGA-G3-A3CJ-01	APOA5	ENST00000542499.1	chr11	116662301:116662413:116662527:116662608:116663095:116663127,	116662528	116662608	116662531	116662531	Frame_Shift_Del	A	-	p.S16fs
LIHC	TCGA-G3-A3CJ-01	SIDT2	ENST00000324225.4,ENST00000278951.7,ENST00000431081.2,ENST00000529484.1	chr11	117063535:117063582:117063868:117063974:117064568:117064679,	117063869	117063974	117063902	117063902	Frame_Shift_Del	T	-	p.D713fs
LIHC	TCGA-G3-A3CJ-01	TAGLN	ENST00000532870.1,ENST00000392951.4,ENST00000525531.1,ENST00000278968.6,ENST00000530649.1	chr11	117073727:117073909:117074022:117074200:117074497:117074600,	117074023	117074200	117074194	117074194	Frame_Shift_Del	T	-	p.F118fs
LIHC	TCGA-G3-A3CJ-01	PCSK7	ENST00000525027.1,ENST00000320934.3	chr11	117096646:117096737:117097872:117098038:117098931:117099066,	117097873	117098038	117097983	117097983	Frame_Shift_Del	G	-	p.P220fs
LIHC	TCGA-G3-A3CJ-01	MPZL2	ENST00000438295.2,ENST00000534175.2,ENST00000278937.2	chr11	118127952:118128028:118130768:118130916:118133152:118133363,	118130769	118130916	118130771	118130771	Frame_Shift_Del	T	-	p.K194fs
LIHC	TCGA-G3-A3CJ-01	UBE4A	ENST00000252108.3,ENST00000431736.2	chr11	118244208:118244400:118245610:118245944:118247288:118247409,	118245611	118245944	118245630	118245630	Frame_Shift_Del	A	-	p.E379fs
LIHC	TCGA-G3-A3CJ-01	TMEM25	ENST00000524522.1,ENST00000442938.2,ENST00000359862.4,ENST00000411589.2,ENST00000524725.1	chr11	118402492:118402586:118403631:118403922:118404571:118404602,118403124:118403176:118403631:118403922:118404134:118404192,118403124:118403176:118403631:118403922:118404571:118404602,	118403632	118403922	118403810	118403810	Frame_Shift_Del	C	-	p.Y187fs
LIHC	TCGA-G3-A3CJ-01	ARCN1	ENST00000264028.4	chr11	118443167:118443265:118451960:118452224:118453893:118454073,	118451961	118452224	118452086	118452086	Frame_Shift_Del	A	-	p.G84fs
LIHC	TCGA-G3-A3CJ-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850225	118850225	Frame_Shift_Del	C	-	p.A153fs
LIHC	TCGA-G3-A3CJ-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850336	118850336	Frame_Shift_Del	C	-	p.S190fs
LIHC	TCGA-G3-A3CJ-01	CCDC84	ENST00000534656.2,ENST00000526463.1,ENST00000532132.1	chr11	118868884:118869027:118869139:118869303:118869720:118869819,	118869140	118869303	118869278	118869278	Frame_Shift_Del	G	-	p.G88fs
LIHC	TCGA-G3-A3CJ-01	DPAGT1	ENST00000442480.1	chr11	118968173:118968261:118968564:118968635:118969112:118969145,	118968565	118968635	118968631	118968631	Frame_Shift_Del	A	-	p.F284fs
LIHC	TCGA-G3-A3CJ-01	DPAGT1	ENST00000432443.2,ENST00000481084.1,ENST00000354202.4,ENST00000409993.2,ENST00000392834.3,ENST00000524658.1	chr11	118968173:118968261:118968564:118968753:118969112:118969145,	118968565	118968753	118968631	118968631	Frame_Shift_Del	A	-	p.F284fs
LIHC	TCGA-G3-A3CJ-01	HINFP	ENST00000527354.1	chr11	118997644:118997835:119001434:119001664:119002244:119002356,118992325:118992349:119001434:119001664:119002244:119002356,	119001435	119001664	119001651	119001651	Frame_Shift_Del	G	-	p.W133fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120291461:120291560:120292511:120292561:120295066:120295124,	120292512	120292561	120292559	120292559	Frame_Shift_Del	A	-	p.K116fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF12	ENST00000529970.1,ENST00000530747.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120331380:120331466:120335945:120336071:120337902:120338017,	120335946	120336071	120335973	120335973	Frame_Shift_Del	A	-	p.K881fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF12	ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120350668:120351139:120351968:120352285:120355146:120355216,	120351969	120352285	120352131	120352131	Frame_Shift_Del	T	-	p.I1467fs
LIHC	TCGA-G3-A3CJ-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120707499:120707553:120732667:120732829:120744774:120744927,	120732668	120732829	120732764	120732764	Frame_Shift_Del	T	-	p.F281fs
LIHC	TCGA-G3-A3CJ-01	GRIK4	ENST00000438375.2,ENST00000527524.2	chr11	120837903:120838032:120852814:120852933:120856612:120857970,	120852815	120852933	120852878	120852878	Frame_Shift_Del	T	-	p.I820fs
LIHC	TCGA-G3-A3CJ-01	HSPA8	ENST00000534567.1,ENST00000525624.1,ENST00000527983.1,ENST00000532780.1,ENST00000534624.1,ENST00000532182.1,ENST00000227378.3,ENST00000528292.1,ENST00000527387.1,ENST00000532636.1,ENST00000453788.2	chr11	122930872:122930976:122931300:122931506:122931827:122931966,	122931301	122931506	122931448	122931448	Frame_Shift_Del	T	-	p.K88fs
LIHC	TCGA-G3-A3CJ-01	ROBO4	ENST00000306534.3,ENST00000533054.1	chr11	124754936:124755143:124756359:124756718:124756872:124756995,	124756360	124756718	124756556	124756556	Frame_Shift_Del	G	-	p.P866fs
LIHC	TCGA-G3-A3CJ-01	ROBO4	ENST00000306534.3,ENST00000525182.1,ENST00000533054.1,ENST00000532216.1	chr11	124761561:124761698:124763583:124763626:124763755:124763848,	124763584	124763626	124763589	124763589	Frame_Shift_Del	T	-	p.K514fs
LIHC	TCGA-G3-A3CJ-01	ROBO4	ENST00000533054.1	chr11	124766511:124766566:124766827:124766951:124767621:124767742,	124766828	124766951	124766947	124766947	Frame_Shift_Del	G	-	p.P94fs
LIHC	TCGA-G3-A3CJ-01	SLC37A2	ENST00000407458.1,ENST00000308074.4,ENST00000526405.1,ENST00000532000.1,ENST00000403796.2,ENST00000298280.5	chr11	124947345:124947424:124949007:124949143:124949579:124949656,	124949008	124949143	124949134	124949134	Frame_Shift_Del	G	-	p.V148fs
LIHC	TCGA-G3-A3CJ-01	SLC37A2	ENST00000403796.2,ENST00000298280.5	chr11	124955472:124955570:124955849:124955914:124958014:124959131,	124955850	124955914	124955860	124955860	Frame_Shift_Del	G	-	p.R479fs
LIHC	TCGA-G3-A3CJ-01	FEZ1	ENST00000278919.3,ENST00000527350.1,ENST00000524427.1	chr11	125322229:125322305:125324025:125324106:125325730:125326002,	125324026	125324106	125324050	125324050	Frame_Shift_Del	A	-	p.F332fs
LIHC	TCGA-G3-A3CJ-01	STT3A	ENST00000534472.1,ENST00000392708.4	chr11	125462761:125462813:125465775:125465898:125466953:125467014,	125465776	125465898	125465826	125465826	Frame_Shift_Del	T	-	p.F6fs
LIHC	TCGA-G3-A3CJ-01	CHEK1	ENST00000534685.1,ENST00000524737.1,ENST00000544373.1,ENST00000526937.1,ENST00000534070.1,ENST00000525396.1,ENST00000278916.3,ENST00000527013.1,ENST00000428830.2,ENST00000438015.1	chr11	125496643:125496728:125497501:125497725:125499126:125499191,	125497502	125497725	125497596	125497596	Frame_Shift_Del	A	-	p.K54fs
LIHC	TCGA-G3-A3CJ-01	CDON	ENST00000263577.7,ENST00000392693.3,ENST00000531738.1	chr11	125867101:125867305:125871613:125871745:125873796:125873971,	125871614	125871745	125871661	125871661	Frame_Shift_Del	T	-	p.N706fs
LIHC	TCGA-G3-A3CJ-01	FAM118B	ENST00000525728.1	chr11	126104889:126104982:126110686:126110939:126120400:126120520,126099119:126099188:126110686:126110939:126120400:126120520,	126110687	126110939	126110769	126110769	Frame_Shift_Del	C	-	p.P57fs
LIHC	TCGA-G3-A3CJ-01	FAM118B	ENST00000528985.1,ENST00000525728.1,ENST00000533050.1,ENST00000360194.4	chr11	126110686:126110939:126120400:126120628:126124199:126124272,	126120401	126120628	126120425	126120425	Frame_Shift_Del	T	-	p.F123fs
LIHC	TCGA-G3-A3CJ-01	FOXRED1	ENST00000534315.1,ENST00000442061.2,ENST00000527004.1,ENST00000525770.1,ENST00000263578.5,ENST00000530642.1,ENST00000534011.1,ENST00000532125.1	chr11	126145953:126146114:126146288:126146418:126146965:126147070,	126146289	126146418	126146310	126146310	Frame_Shift_Del	C	-	p.C331fs
LIHC	TCGA-G3-A3CJ-01	ETS1	ENST00000535549.1	chr11	128333403:128333522:128350085:128350346:128354717:128354966,128333403:128333522:128350085:128350346:128391807:128392205,	128350086	128350346	128350334	128350334	Frame_Shift_Del	C	-	p.G292fs
LIHC	TCGA-G3-A3CJ-01	TP53AIP1	ENST00000527504.1	chr11	128806432:128806544:128806656:128807729:128812688:128812822,	128806657	128807729	128807564	128807564	Frame_Shift_Del	G	-	p.P50fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128843306	128843306	Frame_Shift_Del	G	-	p.P1018fs
LIHC	TCGA-G3-A3CJ-01	PRDM10	ENST00000423662.2,ENST00000358825.5,ENST00000304538.6,ENST00000526082.1,ENST00000528746.1,ENST00000360871.3	chr11	129812320:129812524:129814665:129814907:129817039:129817187,	129814666	129814907	129814878	129814878	Frame_Shift_Del	A	-	p.S184fs
LIHC	TCGA-G3-A3CJ-01	APLP2	ENST00000543137.1,ENST00000338167.5,ENST00000278756.7,ENST00000528499.1,ENST00000345598.5	chr11	130003523:130003623:130005457:130005610:130010292:130010342,	130005458	130005610	130005467	130005467	Frame_Shift_Del	T	-	p.L565fs
LIHC	TCGA-G3-A3CJ-01	ST14	ENST00000278742.5	chr11	130068841:130068964:130069845:130070032:130078304:130078579,	130069846	130070032	130069943	130069943	Frame_Shift_Del	G	-	p.L635fs
LIHC	TCGA-G3-A3CJ-01	ZBTB44	ENST00000357899.4,ENST00000397753.1,ENST00000525842.1	chr11	130109706:130109791:130130750:130131824:130184269:130184486,	130130751	130131824	130131394	130131394	Frame_Shift_Del	T	-	p.K125fs
LIHC	TCGA-G3-A3CJ-01	ZBTB44	ENST00000357899.4,ENST00000397753.1,ENST00000525842.1	chr11	130109706:130109791:130130750:130131824:130184269:130184486,	130130751	130131824	130131639	130131639	Frame_Shift_Del	C	-	p.A44fs
LIHC	TCGA-G3-A3CJ-01	SNX19	ENST00000530356.1,ENST00000265909.4,ENST00000528555.1,ENST00000539184.1,ENST00000533214.1,ENST00000524460.1	chr11	130776519:130776616:130777847:130777978:130779912:130780032,	130777848	130777978	130777882	130777882	Frame_Shift_Del	T	-	p.S711fs
LIHC	TCGA-G3-A3CJ-01	NTM	ENST00000498764.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000496094.1,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132177582:132177717:132180005:132180126:132184445:132184493,	132180006	132180126	132180018	132180018	Frame_Shift_Del	T	-	p.I225fs
LIHC	TCGA-G3-A3CJ-01	NTM	ENST00000498764.1,ENST00000539799.1,ENST00000374786.1,ENST00000427481.2,ENST00000425719.2,ENST00000496094.1,ENST00000374791.3,ENST00000374784.1,ENST00000467255.1	chr11	132177582:132177717:132180005:132180126:132184445:132184493,	132180006	132180126	132180122	132180122	Frame_Shift_Del	A	-	p.K260fs
LIHC	TCGA-G3-A3CJ-01	OPCML	ENST00000524381.1	chr11	132526981:132527214:132812820:132812905:133402158:133402297,	132812821	132812905	132812898	132812898	Frame_Shift_Del	G	-	p.P30fs
LIHC	TCGA-G3-A3CJ-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790646	133790646	Frame_Shift_Del	G	-	p.L992fs
LIHC	TCGA-G3-A3CJ-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018468	134018468	Frame_Shift_Del	G	-	p.G248fs
LIHC	TCGA-G3-A3CJ-01	GLB1L3	ENST00000431683.2,ENST00000410100.2	chr11	134182709:134182781:134183289:134183368:134183834:134183922,	134183290	134183368	134183337	134183337	Frame_Shift_Del	T	-	p.N516fs
LIHC	TCGA-G3-A3CJ-01	SLC6A12	ENST00000545058.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	300233:300377:301643:301814:302442:302543,	301644	301814	301741	301741	Frame_Shift_Del	C	-	p.G535fs
LIHC	TCGA-G3-A3CJ-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	431582:431733:432247:432372:432765:432947,	432248	432372	432324	432324	Frame_Shift_Del	T	-	p.K733fs
LIHC	TCGA-G3-A3CJ-01	WNK1	ENST00000537687.1	chr12	988738:989197:989886:990165:990857:990955,987437:987527:989886:990165:990857:990955,	989887	990165	990131	990131	Frame_Shift_Del	C	-	p.A1286fs
LIHC	TCGA-G3-A3CJ-01	ERC1	ENST00000440394.3,ENST00000397203.2,ENST00000347735.6	chr12	1100463:1100488:1136913:1137738:1192329:1192746,1100432:1100653:1136913:1137738:1192329:1192746,	1136914	1137738	1137560	1137560	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-G3-A3CJ-01	ERC1	ENST00000592048.1	chr12	1100428:1100653:1137504:1137738:1192329:1192746,	1137505	1137738	1137560	1137560	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-G3-A3CJ-01	ERC1	ENST00000589028.1,ENST00000355446.5,ENST00000546231.2,ENST00000588412.1,ENST00000360905.4,ENST00000543263.2,ENST00000543086.3,ENST00000545948.1,ENST00000440394.3,ENST00000397203.2	chr12	1372199:1372331:1399017:1399178:1480998:1481118,	1399018	1399178	1399109	1399109	Frame_Shift_Del	A	-	p.E904fs
LIHC	TCGA-G3-A3CJ-01	ADIPOR2	ENST00000357103.4,ENST00000535774.1	chr12	1882088:1882127:1887019:1887191:1889616:1889684,	1887020	1887191	1887133	1887133	Frame_Shift_Del	T	-	p.C135fs
LIHC	TCGA-G3-A3CJ-01	CACNA2D4	ENST00000537784.1,ENST00000538027.2,ENST00000585708.1,ENST00000586184.1,ENST00000444595.2,ENST00000587995.1,ENST00000588077.1,ENST00000538450.1,ENST00000585385.1,ENST00000545595.2,ENST00000536846.2,ENST00000382722.5	chr12	1908840:1908861:1909165:1909218:1909551:1909604,	1909166	1909218	1909203	1909203	Frame_Shift_Del	C	-	p.W979fs
LIHC	TCGA-G3-A3CJ-01	CACNA1C	ENST00000347598.4,ENST00000399606.1	chr12	2705039:2705169:2706395:2706455:2711019:2711126,2705039:2705169:2706395:2706455:2706602:2706662,	2706396	2706455	2706407	2706407	Frame_Shift_Del	T	-	p.Y935fs
LIHC	TCGA-G3-A3CJ-01	CACNA1C	ENST00000406454.3,ENST00000399634.1	chr12	2788609:2788962:2789528:2789741:2791715:2791844,	2789529	2789741	2789726	2789726	Frame_Shift_Del	C	-	p.A1881fs
LIHC	TCGA-G3-A3CJ-01	ITFG2	ENST00000538822.1	chr12	2933041:2933109:2933255:2933418:2939999:2940060,	2933256	2933418	2933266	2933266	Frame_Shift_Del	C	-	p.D417fs
LIHC	TCGA-G3-A3CJ-01	TULP3	ENST00000538354.1	chr12	3042599:3042696:3043612:3043727:3046796:3046895,3040202:3040406:3043612:3043727:3046796:3046895,	3043613	3043727	3043635	3043635	Frame_Shift_Del	T	-	p.F278fs
LIHC	TCGA-G3-A3CJ-01	TEAD4	ENST00000359864.2,ENST00000358409.2,ENST00000397122.2	chr12	3131009:3131183:3147133:3147274:3149272:3149425,	3147134	3147274	3147179	3147179	Frame_Shift_Del	G	-	p.G315fs
LIHC	TCGA-G3-A3CJ-01	TSPAN9	ENST00000407263.1,ENST00000537971.1,ENST00000011898.5	chr12	3324416:3324521:3387586:3387778:3388157:3388172,3310342:3310422:3387586:3387778:3388157:3388172,	3387587	3387778	3387742	3387742	Frame_Shift_Del	G	-	p.L73fs
LIHC	TCGA-G3-A3CJ-01	TSPAN9	ENST00000537971.1,ENST00000011898.5	chr12	3390363:3390495:3390899:3390983:3392210:3394399,	3390900	3390983	3390959	3390959	Frame_Shift_Del	G	-	p.V208fs
LIHC	TCGA-G3-A3CJ-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736697	4736697	Frame_Shift_Del	C	-	p.G457fs
LIHC	TCGA-G3-A3CJ-01	VWF	ENST00000261405.5	chr12	6092315:6092420:6094210:6094285:6094728:6094831,	6094211	6094285	6094243	6094243	Frame_Shift_Del	T	-	p.N2315fs
LIHC	TCGA-G3-A3CJ-01	VWF	ENST00000261405.5,ENST00000538635.1	chr12	6220031:6220134:6230339:6230504:6232307:6232362,	6230340	6230504	6230369	6230369	Frame_Shift_Del	C	-	p.G64fs
LIHC	TCGA-G3-A3CJ-01	IFFO1	ENST00000356896.4,ENST00000336604.4,ENST00000396840.2	chr12	6659860:6659956:6660106:6660167:6664422:6665237,	6660107	6660167	6660148	6660148	Frame_Shift_Del	C	-	p.V265fs
LIHC	TCGA-G3-A3CJ-01	CHD4	ENST00000309577.6,ENST00000544484.1,ENST00000357008.2,ENST00000544040.1,ENST00000545942.1	chr12	6709700:6709835:6710091:6710219:6710454:6710696,	6710092	6710219	6710155	6710155	Frame_Shift_Del	G	-	p.P288fs
LIHC	TCGA-G3-A3CJ-01	ZNF384	ENST00000361959.3,ENST00000396801.3	chr12	6779925:6780004:6781515:6781698:6782381:6782561,	6781516	6781698	6781651	6781651	Frame_Shift_Del	G	-	p.P320fs
LIHC	TCGA-G3-A3CJ-01	COPS7A	ENST00000538375.1,ENST00000534947.1,ENST00000229251.3,ENST00000455113.2,ENST00000543155.1,ENST00000534877.1,ENST00000543939.1,ENST00000539735.1	chr12	6839567:6839673:6839834:6839986:6840165:6840263,	6839835	6839986	6839847	6839847	Frame_Shift_Del	A	-	p.K218fs
LIHC	TCGA-G3-A3CJ-01	LAG3	ENST00000203629.2,ENST00000538079.1	chr12	6884438:6884714:6886429:6886672:6886956:6887087,	6886430	6886672	6886589	6886589	Frame_Shift_Del	T	-	p.L406fs
LIHC	TCGA-G3-A3CJ-01	TPI1	ENST00000488464.2,ENST00000493987.1,ENST00000535434.1,ENST00000495834.1,ENST00000462761.1,ENST00000229270.4,ENST00000396705.5	chr12	6978027:6978151:6978262:6978347:6978421:6978459,	6978263	6978347	6978333	6978333	Frame_Shift_Del	G	-	p.G141fs
LIHC	TCGA-G3-A3CJ-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000402681.3	chr12	7173120:7173274:7173821:7173937:7174342:7174421,	7173822	7173937	7173920	7173920	Frame_Shift_Del	G	-	p.G324fs
LIHC	TCGA-G3-A3CJ-01	SLC2A3	ENST00000486749.1,ENST00000479059.3,ENST00000075120.7	chr12	8075416:8075620:8077005:8077107:8078439:8078544,	8077006	8077107	8077041	8077041	Frame_Shift_Del	A	-	p.C345fs
LIHC	TCGA-G3-A3CJ-01	FOXJ2	ENST00000428177.2,ENST00000162391.3	chr12	8195253:8195328:8196296:8196365:8196546:8196687,	8196297	8196365	8196305	8196305	Frame_Shift_Del	T	-	p.Y139fs
LIHC	TCGA-G3-A3CJ-01	CLEC4A	ENST00000352620.3	chr12	8276507:8276556:8278156:8278273:8288180:8288332,	8278157	8278273	8278200	8278200	Frame_Shift_Del	C	-	p.F42fs
LIHC	TCGA-G3-A3CJ-01	CLEC4A	ENST00000352620.3	chr12	8276507:8276556:8278156:8278273:8288180:8288332,	8278157	8278273	8278211	8278211	Frame_Shift_Del	T	-	p.L46fs
LIHC	TCGA-G3-A3CJ-01	CLEC4E	ENST00000299663.3	chr12	8687358:8687405:8688685:8688801:8691737:8691902,8687358:8687405:8688685:8688801:8689710:8689862,	8688686	8688801	8688760	8688760	Frame_Shift_Del	A	-	p.F138fs
LIHC	TCGA-G3-A3CJ-01	A2ML1	ENST00000299698.7,ENST00000539547.1,ENST00000541459.1	chr12	9008104:9008188:9009759:9009936:9010102:9010184,	9009760	9009936	9009778	9009778	Frame_Shift_Del	C	-	p.A956fs
LIHC	TCGA-G3-A3CJ-01	PHC1	ENST00000433083.2	chr12	9073580:9073661:9075252:9075384:9083030:9083140,9074196:9074346:9075252:9075384:9083030:9083140,	9075253	9075384	9075313	9075313	Frame_Shift_Del	G	-	p.G136fs
LIHC	TCGA-G3-A3CJ-01	PHC1	ENST00000433847.2,ENST00000543824.1,ENST00000544916.1	chr12	9074196:9074346:9075228:9075384:9083030:9083140,	9075229	9075384	9075313	9075313	Frame_Shift_Del	G	-	p.G136fs
LIHC	TCGA-G3-A3CJ-01	A2M	ENST00000318602.7,ENST00000472360.1	chr12	9251202:9251352:9251976:9252119:9253739:9253803,	9251977	9252119	9252018	9252018	Frame_Shift_Del	C	-	p.D554fs
LIHC	TCGA-G3-A3CJ-01	KLRF1	ENST00000324214.4,ENST00000279544.3	chr12	9994409:9994550:9994919:9995032:9997016:9997256,	9994920	9995032	9994986	9994986	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-G3-A3CJ-01	KLRF1	ENST00000545196.1	chr12	9985898:9986048:9994900:9995032:9997016:9997256,	9994901	9995032	9994986	9994986	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-G3-A3CJ-01	CLEC2B	ENST00000228438.2	chr12	10005731:10006007:10006979:10007083:10010072:10010236,	10006980	10007083	10007022	10007022	Frame_Shift_Del	T	-	p.N100fs
LIHC	TCGA-G3-A3CJ-01	CLEC1B	ENST00000298527.6	chr12	10149758:10149878:10150880:10150979:10151635:10151879,	10150881	10150979	10150915	10150915	Frame_Shift_Del	C	-	p.G43fs
LIHC	TCGA-G3-A3CJ-01	CLEC1A	ENST00000457018.2	chr12	10228102:10228254:10233835:10234012:10251406:10251529,	10233836	10234012	10233943	10233943	Frame_Shift_Del	T	-	p.N95fs
LIHC	TCGA-G3-A3CJ-01	OLR1	ENST00000339968.6,ENST00000539518.1,ENST00000538745.1,ENST00000309539.3	chr12	10312617:10312620:10313384:10313524:10319310:10319548,10313000:10313061:10313384:10313524:10319310:10319548,	10313385	10313524	10313488	10313488	Frame_Shift_Del	T	-	p.N154fs
LIHC	TCGA-G3-A3CJ-01	OLR1	ENST00000543414.1,ENST00000539518.1,ENST00000545927.1,ENST00000309539.3	chr12	10313476:10313524:10319310:10319556:10321672:10321774,	10319311	10319556	10319522	10319522	Frame_Shift_Del	T	-	p.Q71fs
LIHC	TCGA-G3-A3CJ-01	KLRD1	ENST00000381908.3	chr12	10462224:10462287:10464062:10464214:10466005:10466112,	10464063	10464214	10464087	10464087	Frame_Shift_Del	A	-	p.E63fs
LIHC	TCGA-G3-A3CJ-01	MAGOHB	ENST00000320756.2,ENST00000545236.1,ENST00000539554.1	chr12	10760452:10760535:10762429:10762540:10763220:10763279,	10762430	10762540	10762475	10762475	Frame_Shift_Del	T	-	p.K73fs
LIHC	TCGA-G3-A3CJ-01	DDX47	ENST00000541537.1,ENST00000358007.3	chr12	12976136:12976253:12976803:12976950:12977473:12977611,	12976804	12976950	12976926	12976926	Frame_Shift_Del	C	-	p.I291fs
LIHC	TCGA-G3-A3CJ-01	ATF7IP	ENST00000544627.1,ENST00000540793.1,ENST00000543189.1,ENST00000537653.1,ENST00000536444.1,ENST00000261168.4	chr12	14609494:14609568:14610140:14610229:14613428:14613501,	14610141	14610229	14610180	14610180	Frame_Shift_Del	A	-	p.R711fs
LIHC	TCGA-G3-A3CJ-01	RERG	ENST00000393736.3	chr12	15273998:15274053:15370362:15370537:15374128:15374202,15273998:15274053:15370362:15370537:15490310:15490404,	15370363	15370537	15370414	15370414	Frame_Shift_Del	T	-	p.S4fs
LIHC	TCGA-G3-A3CJ-01	PTPRO	ENST00000348962.2,ENST00000543886.1,ENST00000281171.4	chr12	15652375:15652528:15654553:15654997:15656841:15657003,	15654554	15654997	15654736	15654736	Frame_Shift_Del	G	-	p.G282fs
LIHC	TCGA-G3-A3CJ-01	PTPRO	ENST00000348962.2,ENST00000543886.1,ENST00000281171.4	chr12	15652375:15652528:15654553:15654997:15656841:15657003,	15654554	15654997	15654963	15654963	Frame_Shift_Del	T	-	p.A357fs
LIHC	TCGA-G3-A3CJ-01	EPS8	ENST00000543523.1,ENST00000543468.1,ENST00000543612.1,ENST00000542903.1,ENST00000281172.5,ENST00000540613.1	chr12	15774207:15774364:15776091:15776221:15777160:15777341,	15776092	15776221	15776136	15776136	Frame_Shift_Del	C	-	p.A771fs
LIHC	TCGA-G3-A3CJ-01	STRAP	ENST00000538352.1,ENST00000419869.2,ENST00000541731.1,ENST00000025399.6	chr12	16046980:16047077:16048292:16048430:16050815:16050952,	16048293	16048430	16048413	16048413	Frame_Shift_Del	T	-	p.A207fs
LIHC	TCGA-G3-A3CJ-01	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000541695.1,ENST00000542762.1,ENST00000540270.1,ENST00000318197.6	chr12	18854625:18854710:18858099:18858249:18865775:18865844,	18858100	18858249	18858198	18858198	Frame_Shift_Del	G	-	p.Q257fs
LIHC	TCGA-G3-A3CJ-01	PLEKHA5	ENST00000424268.1	chr12	19489448:19489550:19496256:19496353:19498775:19498822,	19496257	19496353	19496293	19496293	Frame_Shift_Del	A	-	p.K818fs
LIHC	TCGA-G3-A3CJ-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000539256.1,ENST00000429027.2,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19489448:19489550:19496256:19496368:19498775:19498822,	19496257	19496368	19496293	19496293	Frame_Shift_Del	A	-	p.K818fs
LIHC	TCGA-G3-A3CJ-01	AEBP2	ENST00000266508.9,ENST00000398864.3	chr12	19593514:19593661:19615443:19615651:19626181:19626289,19592632:19593304:19615443:19615651:19626181:19626289,	19615444	19615651	19615541	19615541	Frame_Shift_Del	A	-	p.K257fs
LIHC	TCGA-G3-A3CJ-01	PDE3A	ENST00000359062.3,ENST00000544307.1	chr12	20799684:20799884:20801621:20801825:20803378:20803534,	20801622	20801825	20801796	20801796	Frame_Shift_Del	T	-	p.F914fs
LIHC	TCGA-G3-A3CJ-01	SLCO1C1	ENST00000266509.2,ENST00000545604.1,ENST00000540354.1,ENST00000381552.1	chr12	20848683:20848741:20852485:20852639:20854251:20854393,	20852486	20852639	20852530	20852530	Frame_Shift_Del	A	-	p.E7fs
LIHC	TCGA-G3-A3CJ-01	SLCO1C1	ENST00000266509.2,ENST00000539415.1,ENST00000545604.1,ENST00000545102.1,ENST00000381552.1	chr12	20864319:20864444:20868072:20868219:20870065:20870164,	20868073	20868219	20868112	20868112	Frame_Shift_Del	T	-	p.V190fs
LIHC	TCGA-G3-A3CJ-01	RECQL	ENST00000421138.2,ENST00000444129.2	chr12	21622735:21623280:21623902:21624032:21624361:21624581,	21623903	21624032	21623933	21623933	Frame_Shift_Del	T	-	p.Q589fs
LIHC	TCGA-G3-A3CJ-01	RECQL	ENST00000421138.2,ENST00000396093.3,ENST00000314748.6,ENST00000444129.2	chr12	21636410:21636508:21639412:21639519:21643132:21643312,	21639413	21639519	21639458	21639458	Frame_Shift_Del	T	-	p.K152fs
LIHC	TCGA-G3-A3CJ-01	RECQL	ENST00000421138.2,ENST00000542432.1,ENST00000396093.3,ENST00000314748.6,ENST00000536964.1,ENST00000539672.1,ENST00000444129.2,ENST00000536240.1	chr12	21643308:21643312:21644452:21644650:21652488:21652549,	21644453	21644650	21644498	21644498	Frame_Shift_Del	C	-	p.A57fs
LIHC	TCGA-G3-A3CJ-01	LDHB	ENST00000350669.1	chr12	21799832:21799950:21807476:21807611:21810684:21810769,	21807477	21807611	21807585	21807585	Frame_Shift_Del	T	-	p.K7fs
LIHC	TCGA-G3-A3CJ-01	CMAS	ENST00000534981.1	chr12	22199220:22199497:22208082:22208225:22208388:22208544,	22208083	22208225	22208126	22208126	Frame_Shift_Del	A	-	p.K102fs
LIHC	TCGA-G3-A3CJ-01	CMAS	ENST00000538498.1,ENST00000229329.2,ENST00000534981.1	chr12	22208390:22208544:22211500:22211634:22213765:22213860,	22211501	22211634	22211595	22211595	Frame_Shift_Del	T	-	p.Y218fs
LIHC	TCGA-G3-A3CJ-01	CMAS	ENST00000229329.2	chr12	22213765:22213860:22215214:22215368:22218054:22218597,22214214:22214386:22215214:22215368:22218054:22218597,	22215215	22215368	22215262	22215262	Frame_Shift_Del	T	-	p.S336fs
LIHC	TCGA-G3-A3CJ-01	C2CD5	ENST00000542683.1	chr12	22646156:22646271:22666227:22666313:22670919:22671071,	22666228	22666313	22666262	22666262	Frame_Shift_Del	A	-	p.L335fs
LIHC	TCGA-G3-A3CJ-01	C2CD5	ENST00000542683.1	chr12	22646156:22646271:22666227:22666313:22670919:22671071,	22666228	22666313	22666279	22666279	Frame_Shift_Del	C	-	p.G329fs
LIHC	TCGA-G3-A3CJ-01	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24995015:24995158:25002719:25002883:25031463:25031583,	25002720	25002883	25002736	25002736	Frame_Shift_Del	C	-	p.D220fs
LIHC	TCGA-G3-A3CJ-01	BCAT1	ENST00000539780.1	chr12	25034234:25034345:25047208:25047409:25054747:25054819,25034234:25034345:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25101860:25101977,25031469:25031583:25047208:25047409:25054747:25054819,	25047209	25047409	25047290	25047290	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-G3-A3CJ-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217752	26217752	Frame_Shift_Del	T	-	p.I142fs
LIHC	TCGA-G3-A3CJ-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26217785	26217785	Frame_Shift_Del	A	-	p.Q153fs
LIHC	TCGA-G3-A3CJ-01	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26218151	26218151	Frame_Shift_Del	A	-	p.E275fs
LIHC	TCGA-G3-A3CJ-01	PPFIBP1	ENST00000540114.1,ENST00000228425.6,ENST00000542629.1,ENST00000537927.1,ENST00000318304.8	chr12	27835556:27835636:27840317:27840440:27841230:27841356,	27840318	27840440	27840402	27840402	Frame_Shift_Del	T	-	p.F784fs
LIHC	TCGA-G3-A3CJ-01	CCDC91	ENST00000306172.5,ENST00000540401.1,ENST00000536442.1,ENST00000539904.1,ENST00000381259.1,ENST00000545737.1,ENST00000535520.1,ENST00000545336.1	chr12	28336672:28336772:28544236:28544344:28603093:28603186,28515370:28515448:28544236:28544344:28603093:28603186,	28544237	28544344	28544311	28544311	Frame_Shift_Del	G	-	p.Q243fs
LIHC	TCGA-G3-A3CJ-01	FAR2	ENST00000182377.4	chr12	29302252:29302340:29423344:29423571:29446232:29446408,29376677:29376827:29423344:29423571:29446232:29446408,	29423345	29423571	29423501	29423501	Frame_Shift_Del	T	-	p.I40fs
LIHC	TCGA-G3-A3CJ-01	FAR2	ENST00000547116.1,ENST00000182377.4,ENST00000536681.3	chr12	29469773:29469945:29474727:29474857:29485532:29485660,	29474728	29474857	29474751	29474751	Frame_Shift_Del	T	-	p.L385fs
LIHC	TCGA-G3-A3CJ-01	ERGIC2	ENST00000360150.4,ENST00000551467.1	chr12	29493965:29494151:29494666:29494749:29496052:29496215,	29494667	29494749	29494714	29494714	Frame_Shift_Del	T	-	p.I343fs
LIHC	TCGA-G3-A3CJ-01	IPO8	ENST00000544829.1,ENST00000535598.1,ENST00000256079.4	chr12	30784828:30784945:30787016:30787220:30789915:30790083,	30787017	30787220	30787033	30787033	Frame_Shift_Del	A	-	p.F961fs
LIHC	TCGA-G3-A3CJ-01	CAPRIN2	ENST00000308433.5,ENST00000454014.2,ENST00000548676.1,ENST00000537553.1	chr12	30883172:30883216:30884276:30884444:30887901:30887948,	30884277	30884444	30884395	30884395	Frame_Shift_Del	A	-	p.F314fs
LIHC	TCGA-G3-A3CJ-01	TSPAN11	ENST00000546076.1,ENST00000261177.9,ENST00000544427.1,ENST00000535215.1	chr12	31132500:31132605:31135466:31135625:31135998:31136085,	31135467	31135625	31135528	31135528	Frame_Shift_Del	G	-	p.R173fs
LIHC	TCGA-G3-A3CJ-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31595708:31595859:31600471:31600703:31604873:31605410,	31600472	31600703	31600566	31600566	Frame_Shift_Del	A	-	p.F589fs
LIHC	TCGA-G3-A3CJ-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31605205	31605205	Frame_Shift_Del	T	-	p.K433fs
LIHC	TCGA-G3-A3CJ-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000546299.1,ENST00000306833.6,ENST00000536562.1	chr12	31613172:31613315:31632522:31633189:31648743:31648836,	31632523	31633189	31632856	31632856	Frame_Shift_Del	T	-	p.S191fs
LIHC	TCGA-G3-A3CJ-01	FGD4	ENST00000534526.2,ENST00000381025.3,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32754211:32754357:32755094:32755251:32760890:32761029,	32755095	32755251	32755198	32755198	Frame_Shift_Del	A	-	p.K314fs
LIHC	TCGA-G3-A3CJ-01	FGD4	ENST00000534526.2,ENST00000381025.3,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32754211:32754357:32755094:32755251:32760890:32761029,	32755095	32755251	32755219	32755219	Frame_Shift_Del	C	-	p.P321fs
LIHC	TCGA-G3-A3CJ-01	FGD4	ENST00000534526.2,ENST00000381025.3,ENST00000546442.1,ENST00000551984.1,ENST00000525053.1,ENST00000493087.1,ENST00000395740.1,ENST00000427716.2,ENST00000266482.3,ENST00000494977.1,ENST00000531134.1	chr12	32764070:32764217:32772631:32772804:32777355:32777386,	32772632	32772804	32772722	32772722	Frame_Shift_Del	A	-	p.K477fs
LIHC	TCGA-G3-A3CJ-01	KIF21A	ENST00000544797.2,ENST00000546817.1,ENST00000552961.1,ENST00000361418.5,ENST00000547108.1,ENST00000395670.3,ENST00000361961.3	chr12	39726838:39726909:39727013:39727082:39730897:39731005,	39727014	39727082	39727037	39727037	Frame_Shift_Del	C	-	p.V822fs
LIHC	TCGA-G3-A3CJ-01	C12orf40	ENST00000324616.5,ENST00000398716.1,ENST00000405531.3	chr12	40034756:40034796:40037580:40037719:40040130:40040263,	40037581	40037719	40037644	40037644	Frame_Shift_Del	A	-	p.K43fs
LIHC	TCGA-G3-A3CJ-01	SLC2A13	ENST00000280871.4,ENST00000465517.1	chr12	40223904:40224030:40258563:40258684:40265599:40265683,	40258564	40258684	40258634	40258634	Frame_Shift_Del	G	-	p.Q417fs
LIHC	TCGA-G3-A3CJ-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40634284:40634419:40637351:40637483:40643627:40643747,	40637352	40637483	40637467	40637467	Frame_Shift_Del	C	-	p.L274fs
LIHC	TCGA-G3-A3CJ-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40706515:40706710:40707773:40707975:40709013:40709102,40704232:40704451:40707773:40707975:40709013:40709102,	40707774	40707975	40707913	40707913	Frame_Shift_Del	A	-	p.E1559fs
LIHC	TCGA-G3-A3CJ-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40745340:40745535:40748100:40748294:40749916:40749989,	40748101	40748294	40748221	40748221	Frame_Shift_Del	A	-	p.K2234fs
LIHC	TCGA-G3-A3CJ-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499779	42499779	Frame_Shift_Del	T	-	p.K235fs
LIHC	TCGA-G3-A3CJ-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148200	44148200	Frame_Shift_Del	T	-	p.K283fs
LIHC	TCGA-G3-A3CJ-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148885	44148885	Frame_Shift_Del	A	-	p.F55fs
LIHC	TCGA-G3-A3CJ-01	IRAK4	ENST00000551736.1,ENST00000448290.2	chr12	44161905:44162075:44165022:44165168:44165982:44166165,	44165023	44165168	44165130	44165130	Frame_Shift_Del	A	-	p.Q90fs
LIHC	TCGA-G3-A3CJ-01	IRAK4	ENST00000551736.1,ENST00000448290.2	chr12	44161905:44162075:44165022:44165168:44165982:44166165,	44165023	44165168	44165138	44165138	Frame_Shift_Del	T	-	p.F94fs
LIHC	TCGA-G3-A3CJ-01	NELL2	ENST00000551601.1,ENST00000549027.1	chr12	45269124:45269136:45269289:45269422:45269597:45269683,	45269290	45269422	45269312	45269312	Frame_Shift_Del	A	-	p.F10fs
LIHC	TCGA-G3-A3CJ-01	ANO6	ENST00000423947.3,ENST00000320560.8,ENST00000441606.2	chr12	45814853:45815056:45816739:45816845:45822887:45823169,	45816740	45816845	45816770	45816770	Frame_Shift_Del	C	-	p.H817fs
LIHC	TCGA-G3-A3CJ-01	ARID2	ENST00000334344.6,ENST00000422737.1	chr12	46231280:46231490:46233111:46233279:46240638:46240720,	46233112	46233279	46233213	46233213	Frame_Shift_Del	T	-	p.L478fs
LIHC	TCGA-G3-A3CJ-01	ARID2	ENST00000444670.1	chr12	46231280:46231490:46233168:46233279:46240638:46240720,	46233169	46233279	46233213	46233213	Frame_Shift_Del	T	-	p.L478fs
LIHC	TCGA-G3-A3CJ-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320299	46320299	Frame_Shift_Del	T	-	p.N747fs
LIHC	TCGA-G3-A3CJ-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46322221	46322221	Frame_Shift_Del	T	-	p.K106fs
LIHC	TCGA-G3-A3CJ-01	RPAP3	ENST00000005386.3,ENST00000432584.3	chr12	48063889:48064128:48073275:48073377:48073486:48073557,	48073276	48073377	48073319	48073319	Frame_Shift_Del	T	-	p.N415fs
LIHC	TCGA-G3-A3CJ-01	RPAP3	ENST00000432584.3	chr12	48091379:48091502:48095246:48095387:48099734:48099769,	48095247	48095387	48095283	48095283	Frame_Shift_Del	T	-	p.K86fs
LIHC	TCGA-G3-A3CJ-01	RAPGEF3	ENST00000171000.4,ENST00000548434.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000549151.1,ENST00000449771.2,ENST00000488250.1	chr12	48134087:48134178:48134424:48134606:48134697:48134823,	48134425	48134606	48134581	48134581	Frame_Shift_Del	C	-	p.G650fs
LIHC	TCGA-G3-A3CJ-01	HDAC7	ENST00000470668.1,ENST00000548080.1,ENST00000548938.1,ENST00000547259.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48177623:48177669:48177861:48178000:48179169:48179254,	48177862	48178000	48177946	48177946	Frame_Shift_Del	G	-	p.P949fs
LIHC	TCGA-G3-A3CJ-01	HDAC7	ENST00000477203.2	chr12	48189369:48189550:48189997:48190081:48190799:48190925,	48189998	48190081	48190032	48190032	Frame_Shift_Del	G	-	p.P251fs
LIHC	TCGA-G3-A3CJ-01	HDAC7	ENST00000470668.1,ENST00000430670.1,ENST00000354334.3	chr12	48189449:48189550:48189989:48190081:48190799:48190925,	48189990	48190081	48190032	48190032	Frame_Shift_Del	G	-	p.P251fs
LIHC	TCGA-G3-A3CJ-01	HDAC7	ENST00000445237.2,ENST00000380610.4,ENST00000430670.1,ENST00000450805.1,ENST00000427332.2,ENST00000354334.3,ENST00000434070.1,ENST00000417107.1,ENST00000080059.7	chr12	48192422:48192435:48192567:48192755:48213549:48213568,48192422:48192435:48192567:48192755:48196006:48196057,	48192568	48192755	48192633	48192633	Frame_Shift_Del	G	-	p.Q65fs
LIHC	TCGA-G3-A3CJ-01	PFKM	ENST00000547587.1,ENST00000547581.1,ENST00000359794.5,ENST00000546964.1,ENST00000340802.6,ENST00000550802.1,ENST00000312352.7,ENST00000395233.2,ENST00000551804.1	chr12	48535755:48535849:48536564:48536729:48537535:48537597,	48536565	48536729	48536676	48536676	Frame_Shift_Del	G	-	p.G660fs
LIHC	TCGA-G3-A3CJ-01	KANSL2	ENST00000420613.2,ENST00000357861.3,ENST00000546701.1	chr12	49073543:49073616:49075164:49075424:49075969:49075994,	49075165	49075424	49075205	49075205	Frame_Shift_Del	T	-	p.R254fs
LIHC	TCGA-G3-A3CJ-01	ADCY6	ENST00000550422.1	chr12	49171890:49172040:49176353:49177221:49182688:49182820,	49176354	49177221	49176764	49176764	Frame_Shift_Del	G	-	p.L152fs
LIHC	TCGA-G3-A3CJ-01	DDX23	ENST00000547165.1	chr12	49230808:49230820:49231063:49231440:49231724:49231844,	49231064	49231440	49231151	49231151	Frame_Shift_Del	T	-	p.K260fs
LIHC	TCGA-G3-A3CJ-01	CCDC65	ENST00000320516.4,ENST00000266984.5,ENST00000547861.1,ENST00000552188.1,ENST00000552942.1	chr12	49312057:49312255:49312467:49312686:49314712:49314746,	49312468	49312686	49312643	49312643	Frame_Shift_Del	A	-	p.E328fs
LIHC	TCGA-G3-A3CJ-01	KMT2D	ENST00000301067.7	chr12	49418592:49418729:49419964:49421105:49421585:49421713,	49419965	49421105	49420553	49420554	Frame_Shift_Del	AC	-	p.WS5065fs
LIHC	TCGA-G3-A3CJ-01	TROAP	ENST00000546776.1,ENST00000547807.1,ENST00000551245.1,ENST00000550346.1,ENST00000551192.1,ENST00000546735.1,ENST00000257909.3,ENST00000548817.1	chr12	49719529:49719667:49719858:49719941:49720450:49720503,	49719859	49719941	49719920	49719920	Frame_Shift_Del	G	-	p.R232fs
LIHC	TCGA-G3-A3CJ-01	TROAP	ENST00000547923.1,ENST00000551245.1,ENST00000257909.3	chr12	49723177:49723237:49723639:49723774:49723927:49724257,	49723640	49723774	49723656	49723656	Frame_Shift_Del	G	-	p.R394fs
LIHC	TCGA-G3-A3CJ-01	TROAP	ENST00000257909.3	chr12	49723645:49723774:49723927:49724726:49724996:49725190,	49723928	49724726	49723979	49723979	Frame_Shift_Del	G	-	p.G452fs
LIHC	TCGA-G3-A3CJ-01	TROAP	ENST00000547923.1	chr12	49723639:49723774:49723927:49724356:49724443:49724726,	49723928	49724356	49723979	49723979	Frame_Shift_Del	G	-	p.G452fs
LIHC	TCGA-G3-A3CJ-01	TROAP	ENST00000257909.3	chr12	49723645:49723774:49723927:49724726:49724996:49725190,	49723928	49724726	49724267	49724267	Frame_Shift_Del	C	-	p.P547fs
LIHC	TCGA-G3-A3CJ-01	TROAP	ENST00000547923.1	chr12	49723639:49723774:49723927:49724356:49724443:49724726,	49723928	49724356	49724267	49724267	Frame_Shift_Del	C	-	p.P547fs
LIHC	TCGA-G3-A3CJ-01	TROAP	ENST00000547923.1,ENST00000257909.3	chr12	49724443:49724726:49724996:49725190:49725355:49725453,	49724997	49725190	49725133	49725133	Frame_Shift_Del	C	-	p.G835fs
LIHC	TCGA-G3-A3CJ-01	FAM186B	ENST00000533372.1,ENST00000544141.1	chr12	49976668:49976892:49982236:49982406:49992537:49992572,	49982237	49982406	49982305	49982305	Frame_Shift_Del	G	-	p.P732fs
LIHC	TCGA-G3-A3CJ-01	PRPF40B	ENST00000551111.1	chr12	50026637:50026663:50026796:50027330:50027419:50027444,	50026797	50027330	50026873	50026873	Frame_Shift_Del	G	-	p.W114fs
LIHC	TCGA-G3-A3CJ-01	PRPF40B	ENST00000551320.1,ENST00000548825.2,ENST00000261897.1,ENST00000548436.1,ENST00000380281.1	chr12	50026637:50026663:50026796:50026907:50027209:50027330,	50026797	50026907	50026873	50026873	Frame_Shift_Del	G	-	p.W114fs
LIHC	TCGA-G3-A3CJ-01	TMBIM6	ENST00000549385.1,ENST00000395006.4,ENST00000547798.1,ENST00000547013.1,ENST00000423828.1,ENST00000552699.1,ENST00000267115.5	chr12	50152465:50152545:50153003:50153104:50155486:50155562,	50153004	50153104	50153018	50153018	Frame_Shift_Del	G	-	p.V234fs
LIHC	TCGA-G3-A3CJ-01	AQP5	ENST00000293599.6	chr12	50357274:50357439:50357874:50357958:50358774:50358998,	50357875	50357958	50357906	50357906	Frame_Shift_Del	C	-	p.A187fs
LIHC	TCGA-G3-A3CJ-01	RACGAP1	ENST00000547905.1,ENST00000454520.2,ENST00000549342.1,ENST00000551016.1,ENST00000434422.1,ENST00000312377.5,ENST00000427314.2	chr12	50386332:50386438:50387913:50388112:50388196:50388292,	50387914	50388112	50387963	50387963	Frame_Shift_Del	T	-	p.K430fs
LIHC	TCGA-G3-A3CJ-01	RACGAP1	ENST00000552157.1,ENST00000551145.1	chr12	50399140:50399175:50400216:50400419:50410413:50410498,50399140:50399175:50400216:50400419:50419180:50419221,	50400217	50400419	50400415	50400415	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-G3-A3CJ-01	ASIC1	ENST00000552438.1,ENST00000453327.3,ENST00000552633.2,ENST00000228468.4,ENST00000447966.2,ENST00000550558.1	chr12	50474884:50474964:50475042:50475147:50475327:50475561,	50475043	50475147	50475078	50475078	Frame_Shift_Del	C	-	p.C517fs
LIHC	TCGA-G3-A3CJ-01	GPD1	ENST00000301149.3,ENST00000550172.1,ENST00000547190.1,ENST00000548814.1	chr12	50499399:50499471:50500070:50500209:50500587:50500699,	50500071	50500209	50500131	50500131	Frame_Shift_Del	G	-	p.G141fs
LIHC	TCGA-G3-A3CJ-01	GPD1	ENST00000301149.3,ENST00000550172.1,ENST00000547190.1,ENST00000548814.1	chr12	50499399:50499471:50500070:50500209:50500587:50500699,	50500071	50500209	50500154	50500154	Frame_Shift_Del	G	-	p.M148fs
LIHC	TCGA-G3-A3CJ-01	LIMA1	ENST00000552720.1,ENST00000552909.1,ENST00000552783.1,ENST00000552823.1,ENST00000341247.4,ENST00000394943.3	chr12	50594559:50594667:50598334:50598483:50599766:50599851,	50598335	50598483	50598447	50598447	Frame_Shift_Del	T	-	p.N251fs
LIHC	TCGA-G3-A3CJ-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000550260.1,ENST00000522085.1,ENST00000548993.1,ENST00000347328.5,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50824280:50824353:50829270:50829407:50831517:50831561,	50829271	50829407	50829361	50829361	Frame_Shift_Del	A	-	p.I163fs
LIHC	TCGA-G3-A3CJ-01	DIP2B	ENST00000301180.5,ENST00000546732.1	chr12	51102230:51102345:51108177:51108379:51112491:51112601,	51108178	51108379	51108330	51108330	Frame_Shift_Del	C	-	p.C934fs
LIHC	TCGA-G3-A3CJ-01	SLC11A2	ENST00000262052.5,ENST00000547688.1,ENST00000262051.7,ENST00000541174.2,ENST00000545993.2,ENST00000394904.3,ENST00000546636.1,ENST00000547198.1,ENST00000546743.1	chr12	51388326:51388413:51389411:51389570:51390599:51390755,	51389412	51389570	51389512	51389512	Frame_Shift_Del	A	-	p.F326fs
LIHC	TCGA-G3-A3CJ-01	LETMD1	ENST00000551931.1,ENST00000550929.1,ENST00000547555.1,ENST00000547660.1,ENST00000546814.1,ENST00000550100.1,ENST00000418425.2,ENST00000552645.1,ENST00000262055.4,ENST00000547318.1,ENST00000549686.1,ENST00000547008.1,ENST00000380123.2,ENST00000552739.1	chr12	51450153:51450285:51451814:51451911:51453143:51453195,	51451815	51451911	51451868	51451868	Frame_Shift_Del	A	-	p.R336fs
LIHC	TCGA-G3-A3CJ-01	LETMD1	ENST00000549395.1	chr12	51450153:51450285:51451857:51451911:51453143:51453195,	51451858	51451911	51451868	51451868	Frame_Shift_Del	A	-	p.R336fs
LIHC	TCGA-G3-A3CJ-01	LETMD1	ENST00000380135.3	chr12	51450153:51450285:51451788:51451911:51453143:51453195,	51451789	51451911	51451868	51451868	Frame_Shift_Del	A	-	p.R336fs
LIHC	TCGA-G3-A3CJ-01	TFCP2	ENST00000549867.1,ENST00000257915.5,ENST00000548108.1	chr12	51501018:51501129:51502903:51503056:51504659:51504766,	51502904	51503056	51503002	51503002	Frame_Shift_Del	C	-	p.V207fs
LIHC	TCGA-G3-A3CJ-01	POU6F1	ENST00000550824.1,ENST00000333640.10,ENST00000389243.4	chr12	51586172:51586254:51589752:51589956:51591552:51591568,51586172:51586254:51589752:51589956:51590581:51590710,	51589753	51589956	51589866	51589866	Frame_Shift_Del	G	-	p.Q46fs
LIHC	TCGA-G3-A3CJ-01	DAZAP2	ENST00000549555.1	chr12	51634126:51634245:51634654:51634823:51636113:51636600,	51634655	51634823	51634737	51634737	Frame_Shift_Del	T	-	p.L72fs
LIHC	TCGA-G3-A3CJ-01	DAZAP2	ENST00000436900.2	chr12	51634126:51634245:51634682:51634900:51636113:51636215,	51634683	51634900	51634737	51634737	Frame_Shift_Del	T	-	p.L72fs
LIHC	TCGA-G3-A3CJ-01	DAZAP2	ENST00000551534.1,ENST00000549497.1,ENST00000412716.3,ENST00000551313.1	chr12	51634126:51634245:51634654:51634900:51636113:51636215,	51634655	51634900	51634737	51634737	Frame_Shift_Del	T	-	p.L72fs
LIHC	TCGA-G3-A3CJ-01	GALNT6	ENST00000543196.2,ENST00000603641.1,ENST00000356317.3	chr12	51759213:51759363:51770978:51771151:51773074:51773565,	51770979	51771151	51771119	51771119	Frame_Shift_Del	G	-	p.P175fs
LIHC	TCGA-G3-A3CJ-01	SLC4A8	ENST00000358657.3,ENST00000604314.1,ENST00000453097.2,ENST00000551071.1,ENST00000319957.6	chr12	51879570:51879684:51882482:51882644:51883483:51883735,	51882483	51882644	51882524	51882524	Frame_Shift_Del	C	-	p.G776fs
LIHC	TCGA-G3-A3CJ-01	ACVRL1	ENST00000547400.1	chr12	52306253:52306319:52306882:52307134:52308222:52308345,	52306883	52307134	52307007	52307007	Frame_Shift_Del	C	-	p.H76fs
LIHC	TCGA-G3-A3CJ-01	NR4A1	ENST00000243050.1,ENST00000360284.3,ENST00000550582.2,ENST00000545748.1,ENST00000394825.1,ENST00000550082.1,ENST00000394824.2,ENST00000550557.1	chr12	52450927:52451043:52451135:52451314:52452471:52452487,	52451136	52451314	52451189	52451189	Frame_Shift_Del	G	-	p.R526fs
LIHC	TCGA-G3-A3CJ-01	ITGB7	ENST00000550743.2,ENST00000338737.4	chr12	53586113:53586322:53587491:53587685:53587981:53588042,	53587492	53587685	53587670	53587670	Frame_Shift_Del	A	-	p.S442fs
LIHC	TCGA-G3-A3CJ-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53680151	53680151	Frame_Shift_Del	C	-	p.P1212fs
LIHC	TCGA-G3-A3CJ-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1	chr12	53677841:53677951:53679707:53680696:53681755:53682108,	53679708	53680696	53680338	53680338	Frame_Shift_Del	C	-	p.A1273fs
LIHC	TCGA-G3-A3CJ-01	PCBP2	ENST00000359462.5,ENST00000547859.2,ENST00000455667.3,ENST00000546463.1,ENST00000447282.1,ENST00000547048.1,ENST00000550585.1,ENST00000550733.1,ENST00000359282.5,ENST00000437231.1,ENST00000552296.2,ENST00000439930.3,ENST00000552819.1,ENST00000549863.1,ENST00000562264.1,ENST00000603815.1,ENST00000548933.1	chr12	53862563:53862616:53865421:53865591:53873189:53873398,	53865422	53865591	53865494	53865494	Frame_Shift_Del	A	-	p.K322fs
LIHC	TCGA-G3-A3CJ-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898184	53898184	Frame_Shift_Del	C	-	p.S142fs
LIHC	TCGA-G3-A3CJ-01	COPZ1	ENST00000551962.1	chr12	54735989:54736071:54737008:54737100:54739243:54739259,54735989:54736071:54737008:54737100:54741550:54741624,	54737009	54737100	54737047	54737047	Frame_Shift_Del	A	-	p.K70fs
LIHC	TCGA-G3-A3CJ-01	ITGA5	ENST00000293379.4	chr12	54797928:54798030:54798213:54798259:54798486:54798678,	54798214	54798259	54798246	54798246	Frame_Shift_Del	C	-	p.G477fs
LIHC	TCGA-G3-A3CJ-01	CD63	ENST00000420846.3,ENST00000550050.1,ENST00000552692.1,ENST00000548898.1,ENST00000551173.1,ENST00000546939.1,ENST00000552164.1,ENST00000548160.1,ENST00000550776.1,ENST00000552067.1,ENST00000552754.1,ENST00000549117.1,ENST00000257857.4	chr12	56119904:56120045:56120483:56120579:56120673:56120747,	56120484	56120579	56120524	56120524	Frame_Shift_Del	T	-	p.N130fs
LIHC	TCGA-G3-A3CJ-01	PMEL	ENST00000360714.4,ENST00000536427.1,ENST00000548493.1	chr12	56355407:56355516:56359719:56359846:56360461:56360493,	56359720	56359846	56359729	56359729	Frame_Shift_Del	C	-	p.A23fs
LIHC	TCGA-G3-A3CJ-01	CDK2	ENST00000354056.4,ENST00000440311.2,ENST00000556464.1	chr12	56361832:56361953:56362561:56362732:56363258:56363360,56361832:56361953:56362561:56362732:56364827:56364871,	56362562	56362732	56362682	56362682	Frame_Shift_Del	T	-	p.F146fs
LIHC	TCGA-G3-A3CJ-01	RAB5B	ENST00000360299.5,ENST00000546810.1,ENST00000448789.2	chr12	56367884:56367923:56380652:56380907:56383730:56383868,	56380653	56380907	56380871	56380871	Frame_Shift_Del	G	-	p.G43fs
LIHC	TCGA-G3-A3CJ-01	ERBB3	ENST00000415288.2,ENST00000551085.1,ENST00000267101.3,ENST00000551242.1	chr12	56480314:56480440:56481360:56481426:56481578:56481697,	56481361	56481426	56481363	56481363	Frame_Shift_Del	C	-	p.P185fs
LIHC	TCGA-G3-A3CJ-01	ERBB3	ENST00000415288.2,ENST00000551085.1,ENST00000267101.3,ENST00000551242.1	chr12	56481360:56481426:56481578:56481697:56481804:56481848,	56481579	56481697	56481631	56481631	Frame_Shift_Del	C	-	p.N222fs
LIHC	TCGA-G3-A3CJ-01	ERBB3	ENST00000415288.2,ENST00000450146.2,ENST00000553131.1,ENST00000551085.1,ENST00000267101.3	chr12	56490531:56490630:56490828:56491014:56491568:56491724,	56490829	56491014	56490962	56490962	Frame_Shift_Del	G	-	p.R803fs
LIHC	TCGA-G3-A3CJ-01	ESYT1	ENST00000394048.5,ENST00000541590.1,ENST00000267113.4,ENST00000547667.1	chr12	56531125:56531157:56531282:56531459:56531615:56531698,	56531283	56531459	56531342	56531342	Frame_Shift_Del	G	-	p.L666fs
LIHC	TCGA-G3-A3CJ-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56565177:56565216:56565462:56565721:56566211:56566274,	56565463	56565721	56565704	56565704	Frame_Shift_Del	T	-	p.K648fs
LIHC	TCGA-G3-A3CJ-01	SMARCC2	ENST00000548130.1,ENST00000267064.4,ENST00000549209.1,ENST00000552931.1	chr12	56566211:56566274:56566368:56566488:56567479:56567633,	56566369	56566488	56566385	56566385	Frame_Shift_Del	T	-	p.K616fs
LIHC	TCGA-G3-A3CJ-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56574760:56574885:56575265:56575381:56575487:56575619,	56575266	56575381	56575296	56575296	Frame_Shift_Del	G	-	p.P309fs
LIHC	TCGA-G3-A3CJ-01	RNF41	ENST00000549038.1,ENST00000552656.1,ENST00000552244.1,ENST00000345093.4	chr12	56601946:56602082:56604080:56604352:56607741:56607802,	56604081	56604352	56604237	56604237	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-G3-A3CJ-01	SLC39A5	ENST00000454355.2,ENST00000266980.4	chr12	56630714:56630795:56630933:56631124:56631371:56631627,	56630934	56631124	56631031	56631031	Frame_Shift_Del	G	-	p.L462fs
LIHC	TCGA-G3-A3CJ-01	PAN2	ENST00000440411.3,ENST00000551359.1,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1,ENST00000547226.1	chr12	56711384:56711427:56712020:56712218:56713091:56713271,56711384:56711427:56712020:56712218:56712871:56712965,	56712021	56712218	56712128	56712128	Frame_Shift_Del	T	-	p.N1156fs
LIHC	TCGA-G3-A3CJ-01	STAT2	ENST00000314128.4,ENST00000418572.2,ENST00000556140.1,ENST00000557235.1	chr12	56744960:56744974:56745075:56745234:56748249:56748291,	56745076	56745234	56745142	56745142	Frame_Shift_Del	G	-	p.P292fs
LIHC	TCGA-G3-A3CJ-01	RBMS2	ENST00000262031.5,ENST00000552916.1,ENST00000550726.1,ENST00000542360.1	chr12	56975616:56975663:56975842:56975936:56980632:56980710,	56975843	56975936	56975854	56975854	Frame_Shift_Del	C	-	p.A264fs
LIHC	TCGA-G3-A3CJ-01	BAZ2A	ENST00000547650.1	chr12	57000416:57000517:57003519:57003721:57003897:57003999,	57003520	57003721	57003541	57003541	Frame_Shift_Del	G	-	p.L661fs
LIHC	TCGA-G3-A3CJ-01	BAZ2A	ENST00000551812.1,ENST00000549884.1,ENST00000379441.3,ENST00000179765.5	chr12	57000416:57000517:57003519:57003730:57003897:57003999,	57003520	57003730	57003541	57003541	Frame_Shift_Del	G	-	p.L661fs
LIHC	TCGA-G3-A3CJ-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57110095	57110095	Frame_Shift_Del	G	-	p.P1740fs
LIHC	TCGA-G3-A3CJ-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57110251	57110251	Frame_Shift_Del	G	-	p.P1688fs
LIHC	TCGA-G3-A3CJ-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112185	57112185	Frame_Shift_Del	G	-	p.P1043fs
LIHC	TCGA-G3-A3CJ-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112560	57112560	Frame_Shift_Del	G	-	p.P918fs
LIHC	TCGA-G3-A3CJ-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114272	57114272	Frame_Shift_Del	C	-	p.A348fs
LIHC	TCGA-G3-A3CJ-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114272	57114272	Frame_Shift_Del	C	-	p.A348fs
LIHC	TCGA-G3-A3CJ-01	HSD17B6	ENST00000555805.1,ENST00000554643.1,ENST00000554150.1,ENST00000555159.1,ENST00000322165.1	chr12	57175873:57176016:57178636:57178800:57180908:57181129,	57178637	57178800	57178753	57178753	Frame_Shift_Del	C	-	p.A230fs
LIHC	TCGA-G3-A3CJ-01	SHMT2	ENST00000553837.1,ENST00000555116.1,ENST00000554604.1,ENST00000555774.1,ENST00000555563.1,ENST00000393827.4,ENST00000557269.1	chr12	57625993:57626075:57626207:57626358:57626486:57626605,	57626208	57626358	57626285	57626285	Frame_Shift_Del	T	-	p.L215fs
LIHC	TCGA-G3-A3CJ-01	SHMT2	ENST00000557487.1	chr12	57625993:57626075:57626265:57626358:57626486:57626605,	57626266	57626358	57626285	57626285	Frame_Shift_Del	T	-	p.L215fs
LIHC	TCGA-G3-A3CJ-01	SHMT2	ENST00000553474.1,ENST00000556825.1,ENST00000555634.1,ENST00000557348.1,ENST00000557433.1,ENST00000328923.3,ENST00000414700.3,ENST00000449049.3	chr12	57625993:57626075:57626235:57626358:57626486:57626605,	57626236	57626358	57626285	57626285	Frame_Shift_Del	T	-	p.L215fs
LIHC	TCGA-G3-A3CJ-01	R3HDM2	ENST00000547019.1	chr12	57682791:57682823:57686354:57686450:57689181:57689290,57677606:57677839:57686354:57686450:57689181:57689290,	57686355	57686450	57686384	57686384	Frame_Shift_Del	T	-	p.R293fs
LIHC	TCGA-G3-A3CJ-01	MARS	ENST00000549074.1	chr12	57881867:57881982:57882801:57882892:57883989:57883999,	57882802	57882892	57882826	57882826	Frame_Shift_Del	G	-	p.R45fs
LIHC	TCGA-G3-A3CJ-01	MARS	ENST00000447721.2,ENST00000537638.2,ENST00000551892.1,ENST00000315473.5,ENST00000262027.5,ENST00000545888.2	chr12	57884320:57884427:57891939:57892056:57892202:57892406,	57891940	57892056	57891957	57891957	Frame_Shift_Del	A	-	p.E263fs
LIHC	TCGA-G3-A3CJ-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920488	57920488	Frame_Shift_Del	C	-	p.F520fs
LIHC	TCGA-G3-A3CJ-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920864	57920864	Frame_Shift_Del	G	-	p.G647fs
LIHC	TCGA-G3-A3CJ-01	MBD6	ENST00000547844.1	chr12	57922784:57922792:57922942:57923108:57923716:57923926,	57922943	57923108	57922988	57922988	Frame_Shift_Del	A	-	p.K995fs
LIHC	TCGA-G3-A3CJ-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927814	57927814	Frame_Shift_Del	C	-	p.G197fs
LIHC	TCGA-G3-A3CJ-01	DCTN2	ENST00000434715.3,ENST00000550750.1,ENST00000551400.1,ENST00000550086.1,ENST00000550201.1,ENST00000543672.1,ENST00000546965.1,ENST00000548249.1,ENST00000550954.1,ENST00000549394.1,ENST00000547345.1,ENST00000548949.1,ENST00000546670.1,ENST00000537439.1	chr12	57928842:57928937:57929266:57929328:57929531:57929628,	57929267	57929328	57929305	57929305	Frame_Shift_Del	T	-	p.T76fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF25	ENST00000333972.7,ENST00000286494.4	chr12	58007476:58007543:58007798:58007902:58008113:58008183,	58007799	58007902	58007825	58007825	Frame_Shift_Del	G	-	p.Q193fs
LIHC	TCGA-G3-A3CJ-01	CDK4	ENST00000551800.1	chr12	58145079:58145125:58145282:58145479:58145957:58146132,	58145283	58145479	58145303	58145303	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-G3-A3CJ-01	CDK4	ENST00000312990.6,ENST00000550419.1,ENST00000551888.1	chr12	58144720:58144873:58145282:58145519:58145957:58146059,58145079:58145125:58145282:58145519:58145957:58146059,	58145283	58145519	58145303	58145303	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-G3-A3CJ-01	CDK4	ENST00000551706.1	chr12	58144720:58144873:58144989:58145519:58145957:58146059,	58144990	58145519	58145303	58145303	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-G3-A3CJ-01	CDK4	ENST00000547281.1	chr12	58145079:58145125:58145282:58145442:58145957:58146059,	58145283	58145442	58145303	58145303	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-G3-A3CJ-01	CDK4	ENST00000552388.1	chr12	58145079:58145125:58145282:58145535:58145957:58146059,	58145283	58145535	58145303	58145303	Frame_Shift_Del	A	-	p.F66fs
LIHC	TCGA-G3-A3CJ-01	USP15	ENST00000280377.5,ENST00000393654.3,ENST00000353364.3	chr12	62749208:62749256:62775270:62775444:62777620:62777779,	62775271	62775444	62775373	62775373	Frame_Shift_Del	A	-	p.K340fs
LIHC	TCGA-G3-A3CJ-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000552115.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62895352:62895478:62902065:62902260:62918294:62918419,	62902066	62902260	62902246	62902246	Frame_Shift_Del	T	-	p.F324fs
LIHC	TCGA-G3-A3CJ-01	DPY19L2	ENST00000306389.7	chr12	64015017:64015117:64020248:64020306:64038182:64038276,	64020249	64020306	64020261	64020261	Frame_Shift_Del	G	-	p.F283fs
LIHC	TCGA-G3-A3CJ-01	DPY19L2	ENST00000306389.7	chr12	64015017:64015117:64020248:64020306:64038182:64038276,	64020249	64020306	64020262	64020262	Frame_Shift_Del	A	-	p.F283fs
LIHC	TCGA-G3-A3CJ-01	C12orf56	ENST00000536975.1,ENST00000542397.1	chr12	64678443:64678533:64679733:64679840:64687060:64687163,	64679734	64679840	64679756	64679756	Frame_Shift_Del	T	-	p.S400fs
LIHC	TCGA-G3-A3CJ-01	XPOT	ENST00000332707.5	chr12	64814132:64814301:64815014:64815251:64816784:64816823,	64815015	64815251	64815219	64815219	Frame_Shift_Del	T	-	p.F350fs
LIHC	TCGA-G3-A3CJ-01	XPOT	ENST00000332707.5	chr12	64818817:64818962:64819117:64819237:64819594:64819689,	64819118	64819237	64819199	64819199	Frame_Shift_Del	T	-	p.F513fs
LIHC	TCGA-G3-A3CJ-01	XPOT	ENST00000332707.5	chr12	64828286:64828403:64828573:64828689:64829406:64829454,	64828574	64828689	64828605	64828605	Frame_Shift_Del	T	-	p.D867fs
LIHC	TCGA-G3-A3CJ-01	XPOT	ENST00000332707.5	chr12	64828286:64828403:64828573:64828689:64829406:64829454,	64828574	64828689	64828610	64828610	Frame_Shift_Del	T	-	p.V869fs
LIHC	TCGA-G3-A3CJ-01	TBK1	ENST00000540417.1,ENST00000539810.1,ENST00000331710.5,ENST00000538890.1	chr12	64849696:64849737:64853968:64854109:64858113:64858179,	64853969	64854109	64854059	64854059	Frame_Shift_Del	A	-	p.K61fs
LIHC	TCGA-G3-A3CJ-01	TBK1	ENST00000331710.5	chr12	64882266:64882368:64883820:64883899:64889262:64889384,	64883821	64883899	64883826	64883826	Frame_Shift_Del	A	-	p.E483fs
LIHC	TCGA-G3-A3CJ-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67699042	67699042	Frame_Shift_Del	T	-	p.F532fs
LIHC	TCGA-G3-A3CJ-01	CAND1	ENST00000540319.1	chr12	67698384:67698526:67698883:67699092:67701176:67701272,	67698884	67699092	67699042	67699042	Frame_Shift_Del	T	-	p.F532fs
LIHC	TCGA-G3-A3CJ-01	MDM1	ENST00000303145.7,ENST00000541686.1,ENST00000545724.1	chr12	68719220:68719355:68720436:68720801:68724886:68725001,	68720437	68720801	68720489	68720489	Frame_Shift_Del	T	-	p.N149fs
LIHC	TCGA-G3-A3CJ-01	RAP1B	ENST00000250559.9,ENST00000540209.1,ENST00000539091.1,ENST00000543393.1,ENST00000463493.1,ENST00000537460.1,ENST00000378985.3,ENST00000538980.1,ENST00000535492.1,ENST00000450214.2,ENST00000393436.5,ENST00000341355.5	chr12	69047904:69048032:69050085:69050229:69050880:69050919,	69050086	69050229	69050205	69050205	Frame_Shift_Del	A	-	p.A148fs
LIHC	TCGA-G3-A3CJ-01	MDM2	ENST00000350057.5,ENST00000462284.1,ENST00000539479.1,ENST00000393415.3,ENST00000311420.9,ENST00000393417.3,ENST00000393416.2	chr12	69218142:69218210:69218334:69218431:69222550:69222711,	69218335	69218431	69218379	69218379	Frame_Shift_Del	T	-	p.H157fs
LIHC	TCGA-G3-A3CJ-01	MDM2	ENST00000350057.5,ENST00000462284.1,ENST00000539479.1,ENST00000393415.3,ENST00000311420.9,ENST00000393417.3	chr12	69207381:69207408:69222550:69222711:69229608:69229623,69218334:69218431:69222550:69222711:69229608:69229623,	69222551	69222711	69222668	69222668	Frame_Shift_Del	A	-	p.E214fs
LIHC	TCGA-G3-A3CJ-01	CNOT2	ENST00000549709.1	chr12	70735889:70735948:70736037:70736087:70737907:70737958,70735889:70735948:70736037:70736087:70737890:70738008,	70736038	70736087	70736080	70736080	Frame_Shift_Del	G	-	p.R79fs
LIHC	TCGA-G3-A3CJ-01	PTPRB	ENST00000551525.1,ENST00000548122.1,ENST00000538708.1,ENST00000451516.2,ENST00000334414.6,ENST00000261266.5,ENST00000550857.1	chr12	70965603:70965867:70970161:70970425:70974815:70975082,	70970162	70970425	70970188	70970188	Frame_Shift_Del	T	-	p.N939fs
LIHC	TCGA-G3-A3CJ-01	PTPRB	ENST00000551525.1,ENST00000550358.1,ENST00000548122.1,ENST00000538708.1,ENST00000334414.6,ENST00000261266.5,ENST00000538174.2	chr12	70983743:70984013:70986061:70986325:70988246:70988504,	70986062	70986325	70986204	70986204	Frame_Shift_Del	C	-	p.G546fs
LIHC	TCGA-G3-A3CJ-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72013094:72013189:72013705:72013904:72013989:72014095,	72013706	72013904	72013735	72013735	Frame_Shift_Del	A	-	p.Y1674fs
LIHC	TCGA-G3-A3CJ-01	TBC1D15	ENST00000472611.2	chr12	72274248:72274387:72278590:72278801:72287001:72287086,72266708:72266783:72278590:72278801:72287001:72287086,	72278591	72278801	72278666	72278666	Frame_Shift_Del	A	-	p.Q140fs
LIHC	TCGA-G3-A3CJ-01	GLIPR1L2	ENST00000378692.3,ENST00000320460.4,ENST00000441218.1,ENST00000550916.1	chr12	75804213:75804459:75807377:75807481:75816683:75816712,	75807378	75807481	75807428	75807428	Frame_Shift_Del	A	-	p.S177fs
LIHC	TCGA-G3-A3CJ-01	KRR1	ENST00000438169.2,ENST00000229214.4	chr12	75898977:75899034:75900095:75900179:75900263:75900389,	75900096	75900179	75900111	75900111	Frame_Shift_Del	A	-	p.F196fs
LIHC	TCGA-G3-A3CJ-01	NAP1L1	ENST00000547969.1,ENST00000535020.2,ENST00000547529.2,ENST00000552342.1,ENST00000547773.1,ENST00000431879.3,ENST00000393263.3,ENST00000544816.1,ENST00000547993.1,ENST00000552147.1,ENST00000549596.1,ENST00000548044.1,ENST00000542344.1,ENST00000261182.8,ENST00000552056.1	chr12	76443535:76443565:76444310:76444433:76446870:76446890,	76444311	76444433	76444381	76444381	Frame_Shift_Del	A	-	p.L330fs
LIHC	TCGA-G3-A3CJ-01	NAP1L1	ENST00000550934.1,ENST00000431879.3	chr12	76453600:76453658:76453917:76454059:76467982:76468019,76449904:76449941:76453917:76454059:76461150:76461174,	76453918	76454059	76454018	76454018	Frame_Shift_Del	T	-	p.N83fs
LIHC	TCGA-G3-A3CJ-01	OSBPL8	ENST00000393250.4,ENST00000393249.2,ENST00000261183.3	chr12	76752485:76752591:76762993:76763081:76763416:76763602,	76762994	76763081	76763036	76763036	Frame_Shift_Del	T	-	p.K762fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC17	ENST00000334822.5,ENST00000426126.2	chr12	77216185:77216311:77220687:77220830:77222169:77222270,	77220688	77220830	77220734	77220734	Frame_Shift_Del	G	-	p.W315fs
LIHC	TCGA-G3-A3CJ-01	CSRP2	ENST00000547435.1,ENST00000311083.5,ENST00000546966.1	chr12	77253326:77253420:77254063:77254193:77256955:77257124,	77254064	77254193	77254105	77254105	Frame_Shift_Del	C	-	p.D124fs
LIHC	TCGA-G3-A3CJ-01	E2F7	ENST00000322886.7	chr12	77415027:77417965:77419337:77419762:77421662:77421918,	77419338	77419762	77419380	77419380	Frame_Shift_Del	G	-	p.P841fs
LIHC	TCGA-G3-A3CJ-01	E2F7	ENST00000322886.7,ENST00000416496.2,ENST00000550669.1	chr12	77427785:77427822:77436844:77436979:77438416:77438575,	77436845	77436979	77436888	77436888	Frame_Shift_Del	T	-	p.K360fs
LIHC	TCGA-G3-A3CJ-01	PPP1R12A	ENST00000550107.1	chr12	80192273:80192364:80199371:80199548:80199945:80200077,80192273:80192364:80199371:80199548:80201005:80201110,	80199372	80199548	80199388	80199388	Frame_Shift_Del	C	-	p.V662fs
LIHC	TCGA-G3-A3CJ-01	PTPRQ	ENST00000266688.5	chr12	80935333:80935624:80935867:80936143:80936508:80936660,	80935868	80936143	80935939	80935939	Frame_Shift_Del	C	-	p.P1170fs
LIHC	TCGA-G3-A3CJ-01	PTPRQ	ENST00000266688.5	chr12	80940334:80940476:80943243:80943513:80981907:80982231,	80943244	80943513	80943379	80943379	Frame_Shift_Del	T	-	p.V1380fs
LIHC	TCGA-G3-A3CJ-01	ACSS3	ENST00000548324.1,ENST00000261206.3,ENST00000548058.1	chr12	81545779:81545875:81568566:81568718:81593119:81593223,	81568567	81568718	81568578	81568578	Frame_Shift_Del	G	-	p.V370fs
LIHC	TCGA-G3-A3CJ-01	SLC6A15	ENST00000551818.1,ENST00000552192.1,ENST00000266682.5	chr12	85264340:85264449:85266380:85266573:85266865:85267043,	85266381	85266573	85266401	85266401	Frame_Shift_Del	T	-	p.I428fs
LIHC	TCGA-G3-A3CJ-01	SLC6A15	ENST00000450363.3,ENST00000266682.5	chr12	85279689:85279847:85285610:85286087:85306301:85306484,	85285611	85286087	85285872	85285872	Frame_Shift_Del	T	-	p.R10fs
LIHC	TCGA-G3-A3CJ-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85441024:85441248:85445954:85446029:85449324:85449385,	85445955	85446029	85445997	85445997	Frame_Shift_Del	A	-	p.K241fs
LIHC	TCGA-G3-A3CJ-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85492132:85492326:85492644:85492772:85497781:85497855,	85492645	85492772	85492748	85492748	Frame_Shift_Del	A	-	p.Q1062fs
LIHC	TCGA-G3-A3CJ-01	C12orf29	ENST00000548757.2,ENST00000453037.3,ENST00000550333.1,ENST00000356891.3,ENST00000547468.1	chr12	88437375:88437492:88439358:88439556:88440583:88440726,	88439359	88439556	88439424	88439424	Frame_Shift_Del	T	-	p.F163fs
LIHC	TCGA-G3-A3CJ-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88452624:88452797:88453674:88453797:88454606:88454771,	88453675	88453797	88453716	88453716	Frame_Shift_Del	T	-	p.I2203fs
LIHC	TCGA-G3-A3CJ-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88453674:88453797:88454606:88454771:88456468:88456555,	88454607	88454771	88454712	88454712	Frame_Shift_Del	T	-	p.K2139fs
LIHC	TCGA-G3-A3CJ-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88486457:88486609:88487546:88487752:88490664:88490776,	88487547	88487752	88487621	88487621	Frame_Shift_Del	T	-	p.M1079fs
LIHC	TCGA-G3-A3CJ-01	CEP290	ENST00000397838.3,ENST00000309041.7,ENST00000552810.1,ENST00000604024.1	chr12	88490664:88490776:88496614:88496788:88500451:88500682,	88496615	88496788	88496745	88496745	Frame_Shift_Del	T	-	p.D954fs
LIHC	TCGA-G3-A3CJ-01	CEP290	ENST00000309041.7,ENST00000552810.1,ENST00000547926.2	chr12	88524941:88524995:88530419:88530563:88532921:88532968,	88530420	88530563	88530480	88530480	Frame_Shift_Del	T	-	p.K127fs
LIHC	TCGA-G3-A3CJ-01	TMTC3	ENST00000547034.1,ENST00000266712.6	chr12	88536083:88536264:88542064:88542281:88548064:88548101,88536083:88536264:88542064:88542281:88547067:88547286,	88542065	88542281	88542178	88542178	Frame_Shift_Del	T	-	p.V29fs
LIHC	TCGA-G3-A3CJ-01	ATP2B1	ENST00000359142.3	chr12	89984879:89985072:89992366:89992520:89992893:89993076,	89992367	89992520	89992414	89992414	Frame_Shift_Del	G	-	p.P1153fs
LIHC	TCGA-G3-A3CJ-01	ATP2B1	ENST00000359142.3,ENST00000261173.2,ENST00000428670.3,ENST00000393164.2,ENST00000348959.3	chr12	89996819:89997031:89997488:89997702:89997931:89998123,	89997489	89997702	89997654	89997654	Frame_Shift_Del	C	-	p.D895fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG7	ENST00000344636.3	chr12	93157816:93157970:93162758:93162856:93163863:93166231,	93162759	93162856	93162795	93162795	Frame_Shift_Del	A	-	p.E324fs
LIHC	TCGA-G3-A3CJ-01	EEA1	ENST00000322349.8	chr12	93175725:93175911:93181642:93181825:93192667:93192862,	93181643	93181825	93181760	93181760	Frame_Shift_Del	T	-	p.K1011fs
LIHC	TCGA-G3-A3CJ-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603118	95603118	Frame_Shift_Del	A	-	p.W648fs
LIHC	TCGA-G3-A3CJ-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603820	95603820	Frame_Shift_Del	T	-	p.M414fs
LIHC	TCGA-G3-A3CJ-01	VEZT	ENST00000546445.1,ENST00000546557.1	chr12	95650929:95651015:95656681:95656857:95660132:95660160,95645742:95645847:95656681:95656857:95660132:95660160,95650325:95650398:95656681:95656857:95660132:95660160,	95656682	95656857	95656790	95656790	Frame_Shift_Del	G	-	p.G123fs
LIHC	TCGA-G3-A3CJ-01	USP44	ENST00000537435.2,ENST00000258499.3,ENST00000393091.2	chr12	95911918:95912129:95914772:95914978:95918455:95918564,	95914773	95914978	95914825	95914825	Frame_Shift_Del	C	-	p.G629fs
LIHC	TCGA-G3-A3CJ-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4	chr12	96059585:96059756:96063853:96063922:96076482:96076590,	96063854	96063922	96063864	96063864	Frame_Shift_Del	T	-	p.K523fs
LIHC	TCGA-G3-A3CJ-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4,ENST00000553059.1	chr12	96107074:96107116:96131643:96131922:96180716:96181246,	96131644	96131922	96131866	96131866	Frame_Shift_Del	T	-	p.K214fs
LIHC	TCGA-G3-A3CJ-01	HAL	ENST00000261208.3,ENST00000552509.1,ENST00000538703.1,ENST00000546999.1,ENST00000541929.1,ENST00000544080.2	chr12	96381970:96382018:96384170:96384310:96386457:96386565,	96384171	96384310	96384250	96384250	Frame_Shift_Del	G	-	p.P259fs
LIHC	TCGA-G3-A3CJ-01	CDK17	ENST00000553042.1,ENST00000543119.2,ENST00000261211.3,ENST00000542666.1	chr12	96683035:96683065:96688776:96688900:96691047:96691110,	96688777	96688900	96688791	96688791	Frame_Shift_Del	T	-	p.K328fs
LIHC	TCGA-G3-A3CJ-01	CDK17	ENST00000548734.1,ENST00000543119.2,ENST00000551816.1,ENST00000261211.3,ENST00000552496.1	chr12	96707187:96707232:96717725:96717890:96793763:96793852,96707187:96707232:96717725:96717890:96728496:96728643,	96717726	96717890	96717803	96717803	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-G3-A3CJ-01	CDK17	ENST00000543119.2	chr12	96717743:96717890:96728496:96728643:96793763:96793852,	96728497	96728643	96728550	96728550	Frame_Shift_Del	A	-	p.L22fs
LIHC	TCGA-G3-A3CJ-01	NEDD1	ENST00000411739.2	chr12	97301381:97301402:97311398:97311515:97313762:97313896,97306500:97306595:97311398:97311515:97313762:97313896,97301479:97301634:97311398:97311515:97313762:97313896,	97311399	97311515	97311455	97311455	Frame_Shift_Del	C	-	p.G96fs
LIHC	TCGA-G3-A3CJ-01	TMPO	ENST00000343315.5,ENST00000261210.5,ENST00000393053.2,ENST00000552831.1,ENST00000556029.1,ENST00000556678.1	chr12	98921663:98921790:98925457:98925616:98931252:98931350,	98925458	98925616	98925481	98925481	Frame_Shift_Del	A	-	p.K145fs
LIHC	TCGA-G3-A3CJ-01	SLC25A3	ENST00000551123.1	chr12	98987756:98987913:98989210:98989439:98991633:98991812,	98989211	98989439	98989253	98989253	Frame_Shift_Del	T	-	p.L67fs
LIHC	TCGA-G3-A3CJ-01	SLC25A3	ENST00000228318.3,ENST00000551917.1,ENST00000548046.1,ENST00000550695.1	chr12	98987756:98987913:98989210:98989335:98991633:98991812,	98989211	98989335	98989253	98989253	Frame_Shift_Del	T	-	p.L67fs
LIHC	TCGA-G3-A3CJ-01	SLC25A3	ENST00000228318.3,ENST00000551917.1,ENST00000401722.3,ENST00000552981.1,ENST00000188376.5,ENST00000549338.1,ENST00000546766.1,ENST00000551123.1	chr12	98992299:98992481:98993732:98993905:98994948:98995059,	98993733	98993905	98993845	98993845	Frame_Shift_Del	C	-	p.P252fs
LIHC	TCGA-G3-A3CJ-01	APAF1	ENST00000552268.1,ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000333991.1,ENST00000551964.1,ENST00000357310.1	chr12	99043264:99043462:99052937:99053121:99056233:99056346,	99052938	99053121	99053070	99053070	Frame_Shift_Del	T	-	p.I220fs
LIHC	TCGA-G3-A3CJ-01	ACTR6	ENST00000553038.1	chr12	100599453:100599535:100601440:100601564:100603850:100603913,100599453:100599522:100601440:100601564:100603850:100603913,100599453:100599522:100601440:100601564:100604072:100604098,	100601441	100601564	100601446	100601446	Frame_Shift_Del	T	-	p.D87fs
LIHC	TCGA-G3-A3CJ-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1	chr12	100656041:100656187:100657274:100657671:100660697:100660833,	100657275	100657671	100657315	100657315	Frame_Shift_Del	T	-	p.R172fs
LIHC	TCGA-G3-A3CJ-01	DEPDC4	ENST00000550587.1,ENST00000551642.1,ENST00000416321.1	chr12	100656041:100656187:100657274:100657671:100660697:100660833,	100657275	100657671	100657397	100657397	Frame_Shift_Del	T	-	p.K144fs
LIHC	TCGA-G3-A3CJ-01	SCYL2	ENST00000360820.2,ENST00000549687.1	chr12	100676909:100676925:100685280:100685438:100691808:100691953,	100685281	100685438	100685305	100685305	Frame_Shift_Del	A	-	p.K69fs
LIHC	TCGA-G3-A3CJ-01	SLC17A8	ENST00000323346.5	chr12	100796117:100796257:100796373:100796523:100797815:100797948,	100796374	100796523	100796458	100796458	Frame_Shift_Del	T	-	p.F330fs
LIHC	TCGA-G3-A3CJ-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904639	100904639	Frame_Shift_Del	C	-	p.P55fs
LIHC	TCGA-G3-A3CJ-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904862	100904862	Frame_Shift_Del	T	-	p.V129fs
LIHC	TCGA-G3-A3CJ-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000188403.7	chr12	100904555:100904921:100926235:100926376:100928667:100928801,	100926236	100926376	100926321	100926321	Frame_Shift_Del	A	-	p.R177fs
LIHC	TCGA-G3-A3CJ-01	NR1H4	ENST00000551379.1,ENST00000392986.3	chr12	100904555:100904921:100926235:100926388:100928667:100928801,	100926236	100926388	100926321	100926321	Frame_Shift_Del	A	-	p.R177fs
LIHC	TCGA-G3-A3CJ-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100930289:100930388:100930725:100930825:100934449:100934596,	100930726	100930825	100930728	100930728	Frame_Shift_Del	A	-	p.L274fs
LIHC	TCGA-G3-A3CJ-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100930289:100930388:100930725:100930825:100934449:100934596,	100930726	100930825	100930783	100930783	Frame_Shift_Del	A	-	p.N293fs
LIHC	TCGA-G3-A3CJ-01	NR1H4	ENST00000321046.5,ENST00000551379.1,ENST00000548884.1,ENST00000188403.7,ENST00000392986.3,ENST00000549996.1	chr12	100930289:100930388:100930725:100930825:100934449:100934596,	100930726	100930825	100930812	100930812	Frame_Shift_Del	A	-	p.T302fs
LIHC	TCGA-G3-A3CJ-01	UTP20	ENST00000551825.1,ENST00000261637.4	chr12	101680098:101680287:101682737:101682819:101683914:101684052,	101682738	101682819	101682804	101682804	Frame_Shift_Del	T	-	p.T194fs
LIHC	TCGA-G3-A3CJ-01	UTP20	ENST00000261637.4	chr12	101739331:101739472:101740228:101740366:101745832:101745972,	101740229	101740366	101740344	101740344	Frame_Shift_Del	T	-	p.I1621fs
LIHC	TCGA-G3-A3CJ-01	GNPTAB	ENST00000299314.7,ENST00000549940.1	chr12	102174334:102174399:102179789:102179995:102182325:102182367,	102179790	102179995	102179845	102179845	Frame_Shift_Del	T	-	p.K172fs
LIHC	TCGA-G3-A3CJ-01	GNPTAB	ENST00000299314.7,ENST00000549940.1	chr12	102182325:102182367:102183715:102183835:102190454:102190540,	102183716	102183835	102183804	102183804	Frame_Shift_Del	A	-	p.Y79fs
LIHC	TCGA-G3-A3CJ-01	PARPBP	ENST00000417507.2	chr12	102572369:102572548:102576326:102576405:102589089:102589225,102559506:102559661:102576326:102576405:102589728:102589865,	102576327	102576405	102576394	102576394	Frame_Shift_Del	A	-	p.K338fs
LIHC	TCGA-G3-A3CJ-01	IGF1	ENST00000392904.1,ENST00000392905.2,ENST00000456098.1	chr12	102796294:102796344:102811732:102811781:102813286:102813468,	102811733	102811781	102811771	102811771	Frame_Shift_Del	G	-	p.P138fs
LIHC	TCGA-G3-A3CJ-01	IGF1	ENST00000392904.1,ENST00000392905.2,ENST00000337514.6,ENST00000307046.8	chr12	102813286:102813468:102869420:102869577:102874096:102874102,	102869421	102869577	102869427	102869427	Frame_Shift_Del	A	-	p.Y72fs
LIHC	TCGA-G3-A3CJ-01	IGF1	ENST00000392904.1,ENST00000392905.2,ENST00000337514.6,ENST00000307046.8	chr12	102813286:102813468:102869420:102869577:102874096:102874102,	102869421	102869577	102869475	102869475	Frame_Shift_Del	C	-	p.A56fs
LIHC	TCGA-G3-A3CJ-01	NT5DC3	ENST00000392876.3	chr12	104179112:104179253:104181218:104181305:104182615:104182697,	104181219	104181305	104181279	104181279	Frame_Shift_Del	A	-	p.L376fs
LIHC	TCGA-G3-A3CJ-01	HSP90B1	ENST00000299767.5,ENST00000548462.1,ENST00000550479.1	chr12	104332117:104332237:104333286:104333403:104335187:104335325,	104333287	104333403	104333352	104333352	Frame_Shift_Del	A	-	p.S347fs
LIHC	TCGA-G3-A3CJ-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373652	104373652	Frame_Shift_Del	A	-	p.P70fs
LIHC	TCGA-G3-A3CJ-01	HCFC2	ENST00000229330.4	chr12	104476490:104476679:104480624:104480792:104481763:104481816,	104480625	104480792	104480678	104480678	Frame_Shift_Del	T	-	p.F373fs
LIHC	TCGA-G3-A3CJ-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529751.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000527688.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104719114:104719207:104720124:104720201:104721292:104721352,	104720125	104720201	104720198	104720198	Frame_Shift_Del	A	-	p.E363fs
LIHC	TCGA-G3-A3CJ-01	TXNRD1	ENST00000524698.1,ENST00000525265.1,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104728014:104728110:104732916:104733051:104742130:104742261,	104732917	104733051	104732963	104732963	Frame_Shift_Del	T	-	p.V500fs
LIHC	TCGA-G3-A3CJ-01	APPL2	ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3,ENST00000547790.1,ENST00000553109.1	chr12	105569812:105569860:105570653:105570794:105571003:105571040,	105570654	105570794	105570661	105570661	Frame_Shift_Del	C	-	p.G602fs
LIHC	TCGA-G3-A3CJ-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000551662.1,ENST00000258530.3	chr12	105591541:105591658:105593150:105593309:105597480:105597563,105591542:105591731:105593150:105593309:105597480:105597563,	105593151	105593309	105593237	105593237	Frame_Shift_Del	T	-	p.E259fs
LIHC	TCGA-G3-A3CJ-01	APPL2	ENST00000547439.1	chr12	105591542:105591731:105593150:105593302:105597480:105597563,	105593151	105593302	105593237	105593237	Frame_Shift_Del	T	-	p.E259fs
LIHC	TCGA-G3-A3CJ-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000551662.1,ENST00000258530.3	chr12	105591541:105591658:105593150:105593309:105597480:105597563,105591542:105591731:105593150:105593309:105597480:105597563,	105593151	105593309	105593277	105593277	Frame_Shift_Del	T	-	p.K246fs
LIHC	TCGA-G3-A3CJ-01	APPL2	ENST00000547439.1	chr12	105591542:105591731:105593150:105593302:105597480:105597563,	105593151	105593302	105593277	105593277	Frame_Shift_Del	T	-	p.K246fs
LIHC	TCGA-G3-A3CJ-01	NUAK1	ENST00000549704.1,ENST00000261402.2,ENST00000548902.1	chr12	106464551:106464684:106466501:106466621:106477641:106477707,	106466502	106466621	106466564	106466564	Frame_Shift_Del	A	-	p.C213fs
LIHC	TCGA-G3-A3CJ-01	RIC8B	ENST00000470628.2,ENST00000392839.2,ENST00000462949.1,ENST00000392837.4	chr12	107177774:107177822:107208473:107209082:107219503:107219598,	107208474	107209082	107208807	107208807	Frame_Shift_Del	T	-	p.F156fs
LIHC	TCGA-G3-A3CJ-01	PWP1	ENST00000541166.1,ENST00000547120.1,ENST00000412830.3,ENST00000552760.1	chr12	108086776:108086873:108090250:108090361:108091243:108091355,	108090251	108090361	108090345	108090345	Frame_Shift_Del	C	-	p.S199fs
LIHC	TCGA-G3-A3CJ-01	PWP1	ENST00000541166.1,ENST00000412830.3	chr12	108096711:108096808:108097461:108097523:108098412:108098524,	108097462	108097523	108097486	108097486	Frame_Shift_Del	T	-	p.F310fs
LIHC	TCGA-G3-A3CJ-01	PRDM4	ENST00000228437.5	chr12	108140051:108140201:108145191:108145986:108147700:108147886,	108145192	108145986	108145224	108145224	Frame_Shift_Del	T	-	p.N365fs
LIHC	TCGA-G3-A3CJ-01	PRDM4	ENST00000228437.5,ENST00000550376.1	chr12	108145423:108145986:108147700:108147886:108150608:108150742,	108147701	108147886	108147745	108147745	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-G3-A3CJ-01	SART3	ENST00000431469.2	chr12	108931263:108931371:108931840:108931979:108932720:108932865,108930483:108930561:108931840:108931979:108932709:108932865,	108931841	108931979	108931948	108931948	Frame_Shift_Del	A	-	p.L365fs
LIHC	TCGA-G3-A3CJ-01	DAO	ENST00000551281.1,ENST00000547122.1,ENST00000549215.1,ENST00000547768.1,ENST00000228476.3	chr12	109290781:109290864:109292454:109292572:109293152:109293208,	109292455	109292572	109292457	109292457	Frame_Shift_Del	C	-	p.T233fs
LIHC	TCGA-G3-A3CJ-01	USP30	ENST00000392784.2,ENST00000536723.1,ENST00000257548.5	chr12	109494486:109494596:109495730:109495913:109505328:109505432,	109495731	109495913	109495865	109495865	Frame_Shift_Del	C	-	p.P111fs
LIHC	TCGA-G3-A3CJ-01	USP30	ENST00000392784.2,ENST00000377883.3,ENST00000257548.5	chr12	109519138:109519198:109519737:109519824:109520467:109520548,	109519738	109519824	109519743	109519743	Frame_Shift_Del	C	-	p.H262fs
LIHC	TCGA-G3-A3CJ-01	USP30	ENST00000392784.2,ENST00000377883.3,ENST00000257548.5	chr12	109519737:109519824:109520467:109520548:109520647:109520722,	109520468	109520548	109520521	109520521	Frame_Shift_Del	T	-	p.T307fs
LIHC	TCGA-G3-A3CJ-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7,ENST00000543201.1,ENST00000538526.1	chr12	109690819:109690963:109692018:109692139:109693944:109694041,	109692019	109692139	109692077	109692077	Frame_Shift_Del	A	-	p.E2035fs
LIHC	TCGA-G3-A3CJ-01	FOXN4	ENST00000299162.5	chr12	109724452:109724549:109725201:109725329:109725648:109725762,	109725202	109725329	109725230	109725230	Frame_Shift_Del	G	-	p.H190fs
LIHC	TCGA-G3-A3CJ-01	UBE3B	ENST00000539599.1,ENST00000434735.2,ENST00000449510.2,ENST00000280774.5,ENST00000342494.3	chr12	109927723:109927809:109928849:109928932:109935622:109935728,	109928850	109928932	109928915	109928915	Frame_Shift_Del	T	-	p.A232fs
LIHC	TCGA-G3-A3CJ-01	C12orf76	ENST00000309050.5	chr12	110494993:110495101:110496792:110496968:110503664:110503838,	110496793	110496968	110496957	110496957	Frame_Shift_Del	A	-	p.F9fs
LIHC	TCGA-G3-A3CJ-01	IFT81	ENST00000550156.1,ENST00000242591.5,ENST00000552912.1	chr12	110628724:110628853:110630421:110630511:110641668:110641755,	110630422	110630511	110630425	110630425	Frame_Shift_Del	A	-	p.K492fs
LIHC	TCGA-G3-A3CJ-01	IFT81	ENST00000550748.1,ENST00000242591.5,ENST00000552912.1	chr12	110643399:110643485:110646975:110647021:110655848:110656365,	110646976	110647021	110646978	110646978	Frame_Shift_Del	A	-	p.E602fs
LIHC	TCGA-G3-A3CJ-01	ATP2A2	ENST00000308664.6,ENST00000539276.2,ENST00000552636.1,ENST00000395494.2,ENST00000377685.5	chr12	110720517:110720600:110729824:110729929:110734403:110734517,	110729825	110729929	110729878	110729878	Frame_Shift_Del	T	-	p.P91fs
LIHC	TCGA-G3-A3CJ-01	ATP2A2	ENST00000308664.6,ENST00000539276.2,ENST00000548169.2,ENST00000395494.2,ENST00000377685.5	chr12	110783053:110783187:110783805:110783923:110784005:110784126,	110783806	110783923	110783814	110783814	Frame_Shift_Del	A	-	p.E890fs
LIHC	TCGA-G3-A3CJ-01	ARPC3	ENST00000228825.7	chr12	110873982:110874009:110874361:110874488:110874888:110874957,	110874362	110874488	110874440	110874440	Frame_Shift_Del	T	-	p.T101fs
LIHC	TCGA-G3-A3CJ-01	GPN3	ENST00000550228.1	chr12	110893642:110893735:110895314:110895439:110897499:110897667,110891616:110891676:110895314:110895439:110897499:110897667,	110895315	110895439	110895351	110895351	Frame_Shift_Del	A	-	p.F177fs
LIHC	TCGA-G3-A3CJ-01	FAM216A	ENST00000548869.1,ENST00000538285.2,ENST00000377673.5	chr12	110910882:110910923:110922882:110923004:110924129:110924259,	110922883	110923004	110922948	110922948	Frame_Shift_Del	C	-	p.P84fs
LIHC	TCGA-G3-A3CJ-01	TCTN1	ENST00000490514.1,ENST00000397656.4,ENST00000377654.3,ENST00000495659.2,ENST00000551590.1,ENST00000397659.4,ENST00000464809.1	chr12	111072200:111072268:111072474:111072584:111074285:111074306,111070276:111070364:111072474:111072584:111074285:111074306,	111072475	111072584	111072557	111072557	Frame_Shift_Del	T	-	p.A265fs
LIHC	TCGA-G3-A3CJ-01	HVCN1	ENST00000356742.5,ENST00000548312.1,ENST00000549442.1,ENST00000242607.8,ENST00000439744.2	chr12	111089129:111089253:111093038:111093143:111098968:111099253,	111093039	111093143	111093110	111093110	Frame_Shift_Del	G	-	p.L115fs
LIHC	TCGA-G3-A3CJ-01	CUX2	ENST00000261726.6	chr12	111736349:111736393:111742013:111742118:111744724:111744916,	111742014	111742118	111742110	111742110	Frame_Shift_Del	C	-	p.P284fs
LIHC	TCGA-G3-A3CJ-01	ATXN2	ENST00000389153.4,ENST00000483311.1,ENST00000377617.3,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111890557:111890644:111891480:111891649:111893832:111893916,	111891481	111891649	111891500	111891500	Frame_Shift_Del	G	-	p.P1298fs
LIHC	TCGA-G3-A3CJ-01	BRAP	ENST00000419234.4,ENST00000539060.1,ENST00000327551.6,ENST00000547043.1	chr12	112082142:112082366:112087742:112087846:112093369:112093459,	112087743	112087846	112087761	112087761	Frame_Shift_Del	T	-	p.K466fs
LIHC	TCGA-G3-A3CJ-01	ACAD10	ENST00000455480.2,ENST00000549590.1,ENST00000413681.3,ENST00000509936.1,ENST00000313698.4,ENST00000507135.1,ENST00000392636.2	chr12	112130500:112130700:112139965:112140114:112143541:112143736,	112139966	112140114	112140078	112140078	Frame_Shift_Del	T	-	p.G100fs
LIHC	TCGA-G3-A3CJ-01	ACAD10	ENST00000552706.2	chr12	112159474:112159543:112165765:112165947:112167609:112167745,112159474:112159543:112165765:112165947:112171726:112171851,	112165766	112165947	112165806	112165806	Frame_Shift_Del	G	-	p.G399fs
LIHC	TCGA-G3-A3CJ-01	ACAD10	ENST00000552706.2	chr12	112159474:112159543:112165765:112165947:112167609:112167745,112159474:112159543:112165765:112165947:112171726:112171851,	112165766	112165947	112165922	112165922	Frame_Shift_Del	G	-	p.V437fs
LIHC	TCGA-G3-A3CJ-01	MAPKAPK5	ENST00000550735.2	chr12	112326688:112326810:112327843:112327948:112330770:112330826,112326688:112326804:112327843:112327948:112330770:112330826,	112327844	112327948	112327901	112327901	Frame_Shift_Del	G	-	p.R425fs
LIHC	TCGA-G3-A3CJ-01	TMEM116	ENST00000548283.2	chr12	112370389:112370463:112371689:112374634:112374963:112375047,	112371690	112374634	112374549	112374549	Frame_Shift_Del	A	-	p.Y87fs
LIHC	TCGA-G3-A3CJ-01	TMEM116	ENST00000552801.2	chr12	112371689:112371834:112374545:112374634:112374963:112375047,	112374546	112374634	112374549	112374549	Frame_Shift_Del	A	-	p.Y87fs
LIHC	TCGA-G3-A3CJ-01	TMEM116	ENST00000550831.3,ENST00000547878.2,ENST00000354825.3,ENST00000552374.2,ENST00000355445.3,ENST00000437003.2	chr12	112371689:112371834:112374495:112374634:112374963:112375047,	112374496	112374634	112374549	112374549	Frame_Shift_Del	A	-	p.Y87fs
LIHC	TCGA-G3-A3CJ-01	NAA25	ENST00000551858.1,ENST00000552527.1,ENST00000549711.1,ENST00000261745.4	chr12	112498073:112498163:112498984:112499192:112506683:112506796,	112498985	112499192	112499044	112499044	Frame_Shift_Del	T	-	p.N433fs
LIHC	TCGA-G3-A3CJ-01	TRAFD1	ENST00000552890.1,ENST00000257604.5,ENST00000412615.2	chr12	112583389:112583466:112585877:112586108:112587554:112587612,	112585878	112586108	112585930	112585930	Frame_Shift_Del	C	-	p.S327fs
LIHC	TCGA-G3-A3CJ-01	TRAFD1	ENST00000552890.1,ENST00000257604.5,ENST00000412615.2	chr12	112583389:112583466:112585877:112586108:112587554:112587612,	112585878	112586108	112586070	112586070	Frame_Shift_Del	G	-	p.G374fs
LIHC	TCGA-G3-A3CJ-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2,ENST00000550968.1	chr12	112641439:112641576:112642289:112642427:112645677:112645804,	112642290	112642427	112642319	112642319	Frame_Shift_Del	T	-	p.N2601fs
LIHC	TCGA-G3-A3CJ-01	RPL6	ENST00000546368.2	chr12	112844102:112844146:112844550:112846460:112847390:112847409,	112844551	112846460	112844660	112844660	Frame_Shift_Del	T	-	p.K124fs
LIHC	TCGA-G3-A3CJ-01	PTPN11	ENST00000351677.2,ENST00000392597.1	chr12	112892367:112892484:112893753:112893867:112910747:112910844,	112893754	112893867	112893850	112893850	Frame_Shift_Del	T	-	p.F247fs
LIHC	TCGA-G3-A3CJ-01	OAS1	ENST00000549820.1	chr12	113344856:113345024:113346340:113346629:113348855:113349040,113344856:113345024:113346340:113346629:113348902:113349040,	113346341	113346629	113346589	113346589	Frame_Shift_Del	G	-	p.E143fs
LIHC	TCGA-G3-A3CJ-01	OAS1	ENST00000551241.1,ENST00000445409.2,ENST00000550689.1,ENST00000452357.2,ENST00000202917.5	chr12	113346427:113346629:113348855:113349040:113354313:113354383,	113348856	113349040	113348884	113348884	Frame_Shift_Del	C	-	p.N166fs
LIHC	TCGA-G3-A3CJ-01	OAS3	ENST00000228928.7	chr12	113385750:113385904:113386665:113387010:113388497:113388780,	113386666	113387010	113386730	113386730	Frame_Shift_Del	C	-	p.T365fs
LIHC	TCGA-G3-A3CJ-01	DTX1	ENST00000257600.3,ENST00000547974.1	chr12	113531842:113531904:113532593:113532752:113532846:113533008,	113532594	113532752	113532689	113532689	Frame_Shift_Del	G	-	p.L441fs
LIHC	TCGA-G3-A3CJ-01	DDX54	ENST00000314045.7,ENST00000306014.5	chr12	113603448:113603522:113603606:113603837:113607574:113607709,	113603607	113603837	113603732	113603732	Frame_Shift_Del	C	-	p.G507fs
LIHC	TCGA-G3-A3CJ-01	DDX54	ENST00000314045.7,ENST00000306014.5,ENST00000552375.1	chr12	113616947:113617136:113617739:113617810:113618733:113618863,	113617740	113617810	113617788	113617788	Frame_Shift_Del	T	-	p.K109fs
LIHC	TCGA-G3-A3CJ-01	TPCN1	ENST00000552077.1,ENST00000335509.6	chr12	113659290:113659431:113664532:113664769:113698172:113698207,	113664533	113664769	113664583	113664583	Frame_Shift_Del	T	-	p.F48fs
LIHC	TCGA-G3-A3CJ-01	TPCN1	ENST00000552077.1,ENST00000547275.1,ENST00000550873.1,ENST00000335509.6,ENST00000541517.1,ENST00000552985.1,ENST00000550785.1	chr12	113664532:113664769:113698172:113698297:113703984:113704002,	113698173	113698297	113698206	113698206	Frame_Shift_Del	C	-	p.A121fs
LIHC	TCGA-G3-A3CJ-01	SDSL	ENST00000553248.1,ENST00000403593.4,ENST00000345635.4	chr12	113866224:113866264:113866964:113867104:113871938:113872027,	113866965	113867104	113867032	113867032	Frame_Shift_Del	C	-	p.L94fs
LIHC	TCGA-G3-A3CJ-01	TBX5	ENST00000310346.4	chr12	114839630:114839725:114841556:114841741:114845618:114846192,	114841557	114841741	114841599	114841599	Frame_Shift_Del	G	-	p.P35fs
LIHC	TCGA-G3-A3CJ-01	FBXW8	ENST00000455858.2,ENST00000309909.5	chr12	117402501:117402659:117423010:117423207:117426467:117426674,	117423011	117423207	117423030	117423030	Frame_Shift_Del	T	-	p.D219fs
LIHC	TCGA-G3-A3CJ-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117657879:117658074:117660519:117660668:117662820:117662942,	117660520	117660668	117660540	117660540	Frame_Shift_Del	G	-	p.R1319fs
LIHC	TCGA-G3-A3CJ-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117657879:117658074:117660519:117660668:117662820:117662942,	117660520	117660668	117660570	117660570	Frame_Shift_Del	C	-	p.V1309fs
LIHC	TCGA-G3-A3CJ-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117680431:117680510:117681101:117681240:117685152:117685327,	117681102	117681240	117681224	117681224	Frame_Shift_Del	A	-	p.F947fs
LIHC	TCGA-G3-A3CJ-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117705847:117705949:117710189:117710364:117715763:117715903,	117710190	117710364	117710207	117710207	Frame_Shift_Del	G	-	p.R608fs
LIHC	TCGA-G3-A3CJ-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117705847:117705949:117710189:117710364:117715763:117715903,	117710190	117710364	117710271	117710271	Frame_Shift_Del	G	-	p.A586fs
LIHC	TCGA-G3-A3CJ-01	WSB2	ENST00000535496.1,ENST00000315436.3,ENST00000441406.2,ENST00000544233.1,ENST00000542304.1,ENST00000543218.1	chr12	118472000:118472163:118472790:118472898:118473018:118473129,	118472791	118472898	118472817	118472817	Frame_Shift_Del	A	-	p.F342fs
LIHC	TCGA-G3-A3CJ-01	WSB2	ENST00000535496.1,ENST00000315436.3,ENST00000441406.2,ENST00000544233.1,ENST00000542304.1,ENST00000543218.1	chr12	118472000:118472163:118472790:118472898:118473018:118473129,	118472791	118472898	118472839	118472839	Frame_Shift_Del	T	-	p.N335fs
LIHC	TCGA-G3-A3CJ-01	WSB2	ENST00000537945.1,ENST00000535496.1,ENST00000315436.3,ENST00000441406.2,ENST00000543186.1,ENST00000540129.1	chr12	118474245:118474315:118476092:118476193:118480645:118480683,	118476093	118476193	118476143	118476143	Frame_Shift_Del	A	-	p.S204fs
LIHC	TCGA-G3-A3CJ-01	TAOK3	ENST00000537305.1,ENST00000537952.1,ENST00000419821.2,ENST00000392533.3	chr12	118610261:118610465:118615005:118615134:118619175:118619412,	118615006	118615134	118615009	118615009	Frame_Shift_Del	T	-	p.K564fs
LIHC	TCGA-G3-A3CJ-01	SUDS3	ENST00000397564.2,ENST00000543473.1	chr12	118817966:118818036:118821816:118821872:118823918:118823990,	118821817	118821872	118821870	118821870	Frame_Shift_Del	A	-	p.E89fs
LIHC	TCGA-G3-A3CJ-01	SUDS3	ENST00000543473.1	chr12	118821816:118821872:118823918:118823990:118827731:118827751,	118823919	118823990	118823948	118823948	Frame_Shift_Del	A	-	p.K101fs
LIHC	TCGA-G3-A3CJ-01	CIT	ENST00000537607.1,ENST00000392520.2,ENST00000392521.2,ENST00000261833.7,ENST00000545913.1	chr12	120168299:120168435:120171968:120172162:120172964:120173162,	120171969	120172162	120172060	120172060	Frame_Shift_Del	C	-	p.A1087fs
LIHC	TCGA-G3-A3CJ-01	CIT	ENST00000546026.1	chr12	120168299:120168435:120171968:120172211:120172964:120173162,	120171969	120172211	120172060	120172060	Frame_Shift_Del	C	-	p.A1087fs
LIHC	TCGA-G3-A3CJ-01	PXN	ENST00000424649.2,ENST00000536957.1,ENST00000458477.2,ENST00000538144.1,ENST00000228307.7,ENST00000267257.7,ENST00000323871.5,ENST00000547983.1	chr12	120659445:120659561:120660351:120660553:120660665:120660802,	120660352	120660553	120660354	120660354	Frame_Shift_Del	G	-	p.P229fs
LIHC	TCGA-G3-A3CJ-01	PXN	ENST00000424649.2,ENST00000536957.1,ENST00000458477.2,ENST00000538144.1,ENST00000228307.7,ENST00000267257.7,ENST00000323871.5,ENST00000547983.1	chr12	120659445:120659561:120660351:120660553:120660665:120660802,	120660352	120660553	120660421	120660421	Frame_Shift_Del	C	-	p.G207fs
LIHC	TCGA-G3-A3CJ-01	PXN	ENST00000424649.2,ENST00000536957.1,ENST00000458477.2,ENST00000538144.1,ENST00000228307.7,ENST00000267257.7,ENST00000323871.5,ENST00000547983.1	chr12	120659445:120659561:120660351:120660553:120660665:120660802,	120660352	120660553	120660475	120660475	Frame_Shift_Del	C	-	p.G190fs
LIHC	TCGA-G3-A3CJ-01	PLA2G1B	ENST00000549767.1,ENST00000308366.4	chr12	120759919:120760120:120762736:120762864:120763663:120763823,	120762737	120762864	120762807	120762807	Frame_Shift_Del	T	-	p.K84fs
LIHC	TCGA-G3-A3CJ-01	MSI1	ENST00000257552.2	chr12	120805810:120805895:120805994:120806076:120806635:120806676,	120805995	120806076	120806044	120806044	Frame_Shift_Del	C	-	p.E45fs
LIHC	TCGA-G3-A3CJ-01	SRSF9	ENST00000229390.3	chr12	120899564:120899965:120901752:120901925:120903429:120903590,	120901753	120901925	120901791	120901791	Frame_Shift_Del	G	-	p.L162fs
LIHC	TCGA-G3-A3CJ-01	RNF10	ENST00000535470.1	chr12	121003286:121003332:121004627:121004783:121008993:121009094,121003286:121003332:121004627:121004783:121013433:121013491,	121004628	121004783	121004735	121004735	Frame_Shift_Del	G	-	p.G665fs
LIHC	TCGA-G3-A3CJ-01	RNF10	ENST00000538254.1,ENST00000413266.2,ENST00000325954.4	chr12	121004755:121004783:121013433:121013491:121013594:121013753,121008993:121009094:121013433:121013491:121013594:121013753,	121013434	121013491	121013473	121013473	Frame_Shift_Del	A	-	p.K728fs
LIHC	TCGA-G3-A3CJ-01	MLEC	ENST00000412616.2	chr12	121125047:121125334:121131893:121132072:121134118:121134156,	121131894	121132072	121131911	121131911	Frame_Shift_Del	A	-	p.K85fs
LIHC	TCGA-G3-A3CJ-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000402834.4	chr12	121708700:121708748:121711858:121712388:121735341:121735860,121708700:121708748:121711858:121712388:121734440:121734489,	121711859	121712388	121711906	121711906	Frame_Shift_Del	G	-	p.R143fs
LIHC	TCGA-G3-A3CJ-01	ANAPC5	ENST00000441917.2,ENST00000544442.1,ENST00000534976.1,ENST00000344395.4,ENST00000541887.1,ENST00000261819.3,ENST00000541652.1,ENST00000539612.1,ENST00000536366.1	chr12	121773335:121773526:121775093:121775195:121779805:121779872,	121775094	121775195	121775140	121775140	Frame_Shift_Del	T	-	p.K238fs
LIHC	TCGA-G3-A3CJ-01	RNF34	ENST00000392464.2,ENST00000361234.5,ENST00000392465.3	chr12	121853961:121854180:121855306:121855714:121858044:121858137,	121855307	121855714	121855601	121855601	Frame_Shift_Del	T	-	p.F175fs
LIHC	TCGA-G3-A3CJ-01	KDM2B	ENST00000377069.4,ENST00000538503.1,ENST00000377071.4,ENST00000538046.2,ENST00000543025.1,ENST00000536437.1	chr12	121932381:121932468:121947369:121947842:121951078:121951205,	121947370	121947842	121947709	121947709	Frame_Shift_Del	G	-	p.P405fs
LIHC	TCGA-G3-A3CJ-01	TMEM120B	ENST00000540377.1	chr12	122209393:122209455:122211326:122211419:122212563:122212628,122199554:122199644:122211326:122211419:122212563:122212628,	122211327	122211419	122211381	122211381	Frame_Shift_Del	G	-	p.R245fs
LIHC	TCGA-G3-A3CJ-01	TMEM120B	ENST00000540377.1	chr12	122209393:122209455:122211326:122211419:122212563:122212628,122199554:122199644:122211326:122211419:122212563:122212628,	122211327	122211419	122211388	122211388	Frame_Shift_Del	G	-	p.L247fs
LIHC	TCGA-G3-A3CJ-01	WDR66	ENST00000397454.2,ENST00000288912.4	chr12	122396848:122397000:122398490:122398664:122399883:122400068,	122398491	122398664	122398499	122398499	Frame_Shift_Del	T	-	p.S714fs
LIHC	TCGA-G3-A3CJ-01	BCL7A	ENST00000432926.2,ENST00000261822.4,ENST00000538010.1	chr12	122468605:122468687:122473236:122473333:122481791:122481959,	122473237	122473333	122473252	122473252	Frame_Shift_Del	A	-	p.K65fs
LIHC	TCGA-G3-A3CJ-01	CLIP1	ENST00000537178.1	chr12	122821178:122821295:122825299:122826244:122837272:122837333,	122825300	122826244	122825961	122825961	Frame_Shift_Del	T	-	p.K586fs
LIHC	TCGA-G3-A3CJ-01	CLIP1	ENST00000361654.4	chr12	122821178:122821295:122825527:122826244:122837272:122837333,	122825528	122826244	122825961	122825961	Frame_Shift_Del	T	-	p.K586fs
LIHC	TCGA-G3-A3CJ-01	CLIP1	ENST00000302528.7,ENST00000361654.4,ENST00000540338.1,ENST00000545889.1,ENST00000358808.2,ENST00000537178.1	chr12	122837272:122837333:122838999:122839103:122839661:122839859,	122839000	122839103	122839040	122839040	Frame_Shift_Del	C	-	p.E423fs
LIHC	TCGA-G3-A3CJ-01	ZCCHC8	ENST00000336229.4,ENST00000543897.1,ENST00000536306.1,ENST00000538116.1,ENST00000542892.1	chr12	122958486:122958822:122962387:122962505:122962752:122962839,	122962388	122962505	122962410	122962410	Frame_Shift_Del	G	-	p.P203fs
LIHC	TCGA-G3-A3CJ-01	ZCCHC8	ENST00000540586.1,ENST00000543897.1	chr12	122967181:122967242:122967825:122968110:122973932:122974010,	122967826	122968110	122968014	122968014	Frame_Shift_Del	T	-	p.I200fs
LIHC	TCGA-G3-A3CJ-01	ZCCHC8	ENST00000336229.4	chr12	122967825:122967891:122968006:122968110:122973932:122974010,	122968007	122968110	122968014	122968014	Frame_Shift_Del	T	-	p.I200fs
LIHC	TCGA-G3-A3CJ-01	ZCCHC8	ENST00000540586.1,ENST00000543897.1	chr12	122967181:122967242:122967825:122968110:122973932:122974010,	122967826	122968110	122968077	122968077	Frame_Shift_Del	A	-	p.C179fs
LIHC	TCGA-G3-A3CJ-01	ZCCHC8	ENST00000336229.4	chr12	122967825:122967891:122968006:122968110:122973932:122974010,	122968007	122968110	122968077	122968077	Frame_Shift_Del	A	-	p.C179fs
LIHC	TCGA-G3-A3CJ-01	KNTC1	ENST00000450485.2,ENST00000333479.7	chr12	123024222:123024301:123026596:123026674:123028146:123028181,	123026597	123026674	123026632	123026632	Frame_Shift_Del	T	-	p.F162fs
LIHC	TCGA-G3-A3CJ-01	KNTC1	ENST00000450485.2,ENST00000333479.7	chr12	123041930:123042056:123042146:123042236:123046467:123046521,	123042147	123042236	123042226	123042226	Frame_Shift_Del	C	-	p.A493fs
LIHC	TCGA-G3-A3CJ-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123339811:123339952:123340097:123340159:123340377:123340450,	123340098	123340159	123340113	123340113	Frame_Shift_Del	T	-	p.F337fs
LIHC	TCGA-G3-A3CJ-01	HIP1R	ENST00000535012.1,ENST00000536617.1,ENST00000253083.4	chr12	123345677:123345739:123345854:123346061:123346252:123346631,	123345855	123346061	123345905	123345905	Frame_Shift_Del	G	-	p.L1001fs
LIHC	TCGA-G3-A3CJ-01	ABCB9	ENST00000540285.1,ENST00000346530.5,ENST00000542678.1,ENST00000546289.1,ENST00000392439.3,ENST00000280560.8	chr12	123414557:123414718:123416738:123416875:123419818:123419978,	123416739	123416875	123416794	123416794	Frame_Shift_Del	G	-	p.P662fs
LIHC	TCGA-G3-A3CJ-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539336.2,ENST00000606320.1,ENST00000302349.5	chr12	123687431:123687631:123687796:123687922:123694602:123694709,	123687797	123687922	123687813	123687813	Frame_Shift_Del	G	-	p.P435fs
LIHC	TCGA-G3-A3CJ-01	C12orf65	ENST00000425637.2	chr12	123718008:123718078:123738193:123739580:123741359:123741438,	123738194	123739580	123738240	123738240	Frame_Shift_Del	T	-	p.F7fs
LIHC	TCGA-G3-A3CJ-01	C12orf65	ENST00000538888.1	chr12	123718008:123718078:123738193:123738746:123741359:123741438,	123738194	123738746	123738240	123738240	Frame_Shift_Del	T	-	p.F7fs
LIHC	TCGA-G3-A3CJ-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123780451:123780597:123782524:123782718:123787370:123787447,	123782525	123782718	123782613	123782613	Frame_Shift_Del	T	-	p.K1317fs
LIHC	TCGA-G3-A3CJ-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123787370:123787447:123789128:123789266:123793856:123793949,	123789129	123789266	123789214	123789214	Frame_Shift_Del	T	-	p.K1229fs
LIHC	TCGA-G3-A3CJ-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123800094:123800207:123801767:123801903:123804446:123804578,	123801768	123801903	123801836	123801836	Frame_Shift_Del	T	-	p.N956fs
LIHC	TCGA-G3-A3CJ-01	TCTN2	ENST00000426174.2,ENST00000303372.5	chr12	124163735:124163836:124171382:124171582:124172597:124172724,	124171383	124171582	124171534	124171534	Frame_Shift_Del	C	-	p.S239fs
LIHC	TCGA-G3-A3CJ-01	ATP6V0A2	ENST00000330342.3,ENST00000534943.1	chr12	124236829:124236949:124238966:124239084:124241361:124241533,	124238967	124239084	124239039	124239039	Frame_Shift_Del	A	-	p.T750fs
LIHC	TCGA-G3-A3CJ-01	DNAH10	ENST00000409039.3,ENST00000492261.1	chr12	124416337:124416394:124416487:124416655:124417877:124417986,	124416488	124416655	124416543	124416543	Frame_Shift_Del	T	-	p.L4277fs
LIHC	TCGA-G3-A3CJ-01	NCOR2	ENST00000461081.1	chr12	124817675:124817825:124818969:124819826:124820028:124820178,	124818970	124819826	124818976	124818976	Frame_Shift_Del	C	-	p.G2207fs
LIHC	TCGA-G3-A3CJ-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1	chr12	124817675:124817825:124818969:124819163:124819680:124819727,	124818970	124819163	124818976	124818976	Frame_Shift_Del	C	-	p.G2207fs
LIHC	TCGA-G3-A3CJ-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1	chr12	124826368:124826620:124827550:124827772:124829142:124829420,	124827551	124827772	124827673	124827673	Frame_Shift_Del	G	-	p.P1612fs
LIHC	TCGA-G3-A3CJ-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1,ENST00000458234.1	chr12	124839023:124839128:124839382:124839485:124839977:124840117,	124839383	124839485	124839393	124839393	Frame_Shift_Del	G	-	p.P1165fs
LIHC	TCGA-G3-A3CJ-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000458234.1	chr12	124839977:124840117:124841187:124841352:124846671:124846840,	124841188	124841352	124841331	124841331	Frame_Shift_Del	G	-	p.P1040fs
LIHC	TCGA-G3-A3CJ-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1,ENST00000458234.1	chr12	124870290:124870433:124882664:124882727:124885046:124885219,	124882665	124882727	124882677	124882677	Frame_Shift_Del	T	-	p.T622fs
LIHC	TCGA-G3-A3CJ-01	SCARB1	ENST00000538291.1	chr12	125263044:125263132:125267228:125271049:125271951:125272003,	125267229	125271049	125267262	125267262	Frame_Shift_Del	G	-	p.P499fs
LIHC	TCGA-G3-A3CJ-01	SCARB1	ENST00000261693.6,ENST00000376788.1	chr12	125263044:125263132:125267228:125267357:125270986:125271049,125263044:125263132:125267228:125267357:125270902:125271039,	125267229	125267357	125267262	125267262	Frame_Shift_Del	G	-	p.P499fs
LIHC	TCGA-G3-A3CJ-01	AACS	ENST00000441247.2,ENST00000316519.6,ENST00000261686.6,ENST00000316543.10	chr12	125599022:125599103:125603186:125603311:125609250:125609315,	125603187	125603311	125603239	125603239	Frame_Shift_Del	C	-	p.A350fs
LIHC	TCGA-G3-A3CJ-01	SLC15A4	ENST00000544112.1,ENST00000545031.1,ENST00000376744.4,ENST00000266771.5	chr12	129278717:129278901:129283803:129283962:129285398:129285554,	129283804	129283962	129283934	129283934	Frame_Shift_Del	G	-	p.P481fs
LIHC	TCGA-G3-A3CJ-01	PIWIL1	ENST00000245255.3	chr12	130842025:130842098:130845724:130845925:130846042:130846146,	130845725	130845925	130845801	130845801	Frame_Shift_Del	C	-	p.T581fs
LIHC	TCGA-G3-A3CJ-01	PIWIL1	ENST00000245255.3	chr12	130847535:130847689:130851677:130851803:130855720:130855868,	130851678	130851803	130851724	130851724	Frame_Shift_Del	T	-	p.F749fs
LIHC	TCGA-G3-A3CJ-01	SFSWAP	ENST00000538548.1,ENST00000261674.4	chr12	132250662:132250853:132262609:132262875:132271007:132271133,	132262610	132262875	132262679	132262679	Frame_Shift_Del	C	-	p.P738fs
LIHC	TCGA-G3-A3CJ-01	SFSWAP	ENST00000538548.1,ENST00000261674.4	chr12	132250662:132250853:132262609:132262875:132271007:132271133,	132262610	132262875	132262742	132262742	Frame_Shift_Del	A	-	p.K760fs
LIHC	TCGA-G3-A3CJ-01	ULK1	ENST00000541761.1,ENST00000321867.4	chr12	132401955:132402099:132403041:132403226:132403756:132403929,	132403042	132403226	132403046	132403046	Frame_Shift_Del	C	-	p.G777fs
LIHC	TCGA-G3-A3CJ-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132549212:132549431:132551318:132551514:132551906:132552031,	132551319	132551514	132551474	132551474	Frame_Shift_Del	G	-	p.A2939fs
LIHC	TCGA-G3-A3CJ-01	FBRSL1	ENST00000261673.6,ENST00000434748.2	chr12	133084741:133084936:133102319:133102409:133104538:133104574,	133102320	133102409	133102341	133102341	Frame_Shift_Del	G	-	p.G172fs
LIHC	TCGA-G3-A3CJ-01	FBRSL1	ENST00000542306.1,ENST00000261673.6,ENST00000434748.2	chr12	133151081:133151150:133153384:133153517:133158024:133158102,	133153385	133153517	133153399	133153399	Frame_Shift_Del	C	-	p.D615fs
LIHC	TCGA-G3-A3CJ-01	ZNF268	ENST00000541009.2,ENST00000536435.2,ENST00000416488.1,ENST00000228289.5	chr12	133758531:133758616:133764457:133764658:133768074:133768201,	133764458	133764658	133764640	133764640	Frame_Shift_Del	A	-	p.P72fs
LIHC	TCGA-G3-A3CJ-01	ZNF268	ENST00000541975.2,ENST00000500625.3	chr12	133758531:133758616:133764450:133764658:133768074:133768201,	133764451	133764658	133764640	133764640	Frame_Shift_Del	A	-	p.P72fs
LIHC	TCGA-G3-A3CJ-01	PSPC1	ENST00000492741.1,ENST00000338910.4,ENST00000471658.1	chr13	20304378:20304484:20315704:20315789:20325410:20325607,	20315705	20315789	20315725	20315725	Frame_Shift_Del	T	-	p.K344fs
LIHC	TCGA-G3-A3CJ-01	PSPC1	ENST00000492741.1,ENST00000338910.4,ENST00000471658.1	chr13	20325410:20325607:20333462:20333558:20346381:20346683,	20333463	20333558	20333479	20333479	Frame_Shift_Del	T	-	p.T252fs
LIHC	TCGA-G3-A3CJ-01	ZMYM2	ENST00000382869.3	chr13	20534097:20534166:20567202:20568059:20576989:20577275,	20567203	20568059	20567394	20567394	Frame_Shift_Del	T	-	p.V61fs
LIHC	TCGA-G3-A3CJ-01	ZMYM2	ENST00000382871.2,ENST00000382874.2,ENST00000382883.3,ENST00000382869.3	chr13	20593686:20593758:20600751:20600902:20601342:20601458,	20600752	20600902	20600800	20600800	Frame_Shift_Del	T	-	p.F546fs
LIHC	TCGA-G3-A3CJ-01	ZMYM2	ENST00000382871.2,ENST00000382870.3,ENST00000382874.2,ENST00000382869.3	chr13	20638590:20638685:20640990:20641159:20641378:20641530,	20640991	20641159	20641108	20641108	Frame_Shift_Del	A	-	p.K1084fs
LIHC	TCGA-G3-A3CJ-01	CRYL1	ENST00000382812.1,ENST00000298248.7	chr13	20978773:20978880:20987420:20987526:21006240:21006435,	20987421	20987526	20987448	20987448	Frame_Shift_Del	G	-	p.L216fs
LIHC	TCGA-G3-A3CJ-01	IFT88	ENST00000351808.5,ENST00000537103.1	chr13	21142023:21142136:21148518:21148614:21157095:21157155,21141304:21141395:21148518:21148614:21157095:21157155,	21148519	21148614	21148532	21148532	Frame_Shift_Del	A	-	p.Q12fs
LIHC	TCGA-G3-A3CJ-01	XPO4	ENST00000255305.6,ENST00000400602.2	chr13	21361619:21361737:21362624:21362755:21364600:21364719,	21362625	21362755	21362689	21362689	Frame_Shift_Del	T	-	p.I995fs
LIHC	TCGA-G3-A3CJ-01	SKA3	ENST00000314759.5,ENST00000298260.4	chr13	21728835:21729289:21732060:21732264:21734040:21734126,21729831:21729950:21732060:21732264:21734040:21734126,	21732061	21732264	21732185	21732185	Frame_Shift_Del	A	-	p.L332fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC20	ENST00000494731.1,ENST00000382466.3,ENST00000542645.1,ENST00000320220.9,ENST00000415724.1,ENST00000400590.3	chr13	21957058:21957148:21961646:21961773:21965860:21965901,	21961647	21961773	21961725	21961725	Frame_Shift_Del	A	-	p.F259fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC20	ENST00000494731.1,ENST00000382466.3,ENST00000542645.1,ENST00000320220.9,ENST00000415724.1,ENST00000400590.3	chr13	21961646:21961773:21965860:21965993:21974511:21974632,	21965861	21965993	21965947	21965947	Frame_Shift_Del	A	-	p.F215fs
LIHC	TCGA-G3-A3CJ-01	SACS	ENST00000455470.1	chr13	23902968:23903623:23915583:23915829:23927923:23928015,	23915584	23915829	23915694	23915694	Frame_Shift_Del	G	-	p.P774fs
LIHC	TCGA-G3-A3CJ-01	SACS	ENST00000382292.3,ENST00000402364.1,ENST00000455470.1,ENST00000382298.3	chr13	23928657:23930146:23932473:23932620:23939304:23939416,	23932474	23932620	23932536	23932536	Frame_Shift_Del	T	-	p.K181fs
LIHC	TCGA-G3-A3CJ-01	TNFRSF19	ENST00000403372.2	chr13	24144802:24144987:24190005:24190184:24200845:24200931,	24190006	24190184	24190143	24190143	Frame_Shift_Del	T	-	p.C106fs
LIHC	TCGA-G3-A3CJ-01	PARP4	ENST00000381989.3	chr13	25005514:25005614:25008532:25009612:25015983:25016106,	25008533	25009612	25009293	25009293	Frame_Shift_Del	G	-	p.P1329fs
LIHC	TCGA-G3-A3CJ-01	ATP12A	ENST00000381946.3	chr13	25264741:25264859:25265119:25265388:25266566:25266765,	25265120	25265388	25265324	25265324	Frame_Shift_Del	C	-	p.S341fs
LIHC	TCGA-G3-A3CJ-01	ATP12A	ENST00000218548.6	chr13	25264741:25264859:25265101:25265388:25266566:25266765,	25265102	25265388	25265324	25265324	Frame_Shift_Del	C	-	p.S341fs
LIHC	TCGA-G3-A3CJ-01	CENPJ	ENST00000381884.4,ENST00000545981.1,ENST00000471870.1	chr13	25458538:25458601:25459413:25459524:25459743:25459808,	25459414	25459524	25459468	25459468	Frame_Shift_Del	T	-	p.K1141fs
LIHC	TCGA-G3-A3CJ-01	CENPJ	ENST00000545981.1	chr13	25459427:25459524:25459743:25459808:25463453:25463493,25459427:25459524:25459743:25459808:25466780:25467005,	25459744	25459808	25459748	25459748	Frame_Shift_Del	C	-	p.G1121fs
LIHC	TCGA-G3-A3CJ-01	ATP8A2	ENST00000281620.6,ENST00000491840.1,ENST00000381655.2	chr13	26348986:26349097:26402255:26402330:26411300:26411423,	26402256	26402330	26402280	26402280	Frame_Shift_Del	T	-	p.F902fs
LIHC	TCGA-G3-A3CJ-01	CDK8	ENST00000536792.1	chr13	26828778:26828906:26911703:26911779:26923208:26923319,	26911704	26911779	26911752	26911752	Frame_Shift_Del	C	-	p.I59fs
LIHC	TCGA-G3-A3CJ-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014296	28014296	Frame_Shift_Del	A	-	p.L97fs
LIHC	TCGA-G3-A3CJ-01	FLT3	ENST00000380982.4,ENST00000241453.7,ENST00000380987.2,ENST00000537084.1	chr13	28624231:28624359:28626681:28626811:28631483:28631599,	28626682	28626811	28626686	28626686	Frame_Shift_Del	C	-	p.E204fs
LIHC	TCGA-G3-A3CJ-01	PAN3	ENST00000399613.1,ENST00000380958.3	chr13	28713169:28713224:28748408:28748530:28750629:28750696,	28748409	28748530	28748431	28748431	Frame_Shift_Del	T	-	p.A5fs
LIHC	TCGA-G3-A3CJ-01	SLC7A1	ENST00000380752.5	chr13	30098268:30098390:30104674:30104849:30106960:30107119,	30104675	30104849	30104707	30104707	Frame_Shift_Del	A	-	p.F224fs
LIHC	TCGA-G3-A3CJ-01	USPL1	ENST00000255304.4	chr13	31204971:31205611:31211880:31211994:31216764:31216894,	31211881	31211994	31211956	31211956	Frame_Shift_Del	T	-	p.I315fs
LIHC	TCGA-G3-A3CJ-01	TEX26	ENST00000531960.1,ENST00000380473.3	chr13	31540358:31540535:31543021:31543183:31548982:31549153,	31543022	31543183	31543124	31543124	Frame_Shift_Del	T	-	p.L251fs
LIHC	TCGA-G3-A3CJ-01	RXFP2	ENST00000380314.1,ENST00000298386.2	chr13	32363258:32363330:32365942:32366172:32366814:32367225,	32365943	32366172	32366098	32366098	Frame_Shift_Del	T	-	p.L434fs
LIHC	TCGA-G3-A3CJ-01	FRY	ENST00000380250.3	chr13	32721418:32721522:32721975:32722084:32723884:32723971,	32721976	32722084	32722055	32722055	Frame_Shift_Del	T	-	p.F455fs
LIHC	TCGA-G3-A3CJ-01	BRCA2	ENST00000544455.1,ENST00000380152.3	chr13	32910401:32915333:32918694:32918790:32920963:32921033,	32918695	32918790	32918746	32918746	Frame_Shift_Del	A	-	p.E2298fs
LIHC	TCGA-G3-A3CJ-01	BRCA2	ENST00000544455.1,ENST00000380152.3	chr13	32937315:32937670:32944538:32944694:32945092:32945237,	32944539	32944694	32944607	32944607	Frame_Shift_Del	T	-	p.P2800fs
LIHC	TCGA-G3-A3CJ-01	N4BP2L2	ENST00000505213.1,ENST00000267068.3	chr13	33101600:33101669:33109905:33111164:33112754:33112821,	33109906	33111164	33111017	33111017	Frame_Shift_Del	T	-	p.T50fs
LIHC	TCGA-G3-A3CJ-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33315217:33315286:33316728:33316865:33320114:33320238,	33316729	33316865	33316771	33316771	Frame_Shift_Del	A	-	p.K840fs
LIHC	TCGA-G3-A3CJ-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635050	33635050	Frame_Shift_Del	A	-	p.N612fs
LIHC	TCGA-G3-A3CJ-01	NBEA	ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3	chr13	35756496:35756665:35758112:35758208:35770000:35770439,	35758113	35758208	35758187	35758187	Frame_Shift_Del	T	-	p.F1636fs
LIHC	TCGA-G3-A3CJ-01	CCNA1	ENST00000255465.4,ENST00000418263.1,ENST00000440264.1,ENST00000449823.1	chr13	37015254:37015368:37016307:37016441:37016750:37017019,	37016308	37016441	37016395	37016395	Frame_Shift_Del	C	-	p.P433fs
LIHC	TCGA-G3-A3CJ-01	SMAD9	ENST00000350148.5	chr13	37427555:37427812:37439673:37439895:37446794:37447052,	37439674	37439895	37439676	37439676	Frame_Shift_Del	T	-	p.K334fs
LIHC	TCGA-G3-A3CJ-01	SMAD9	ENST00000350148.5	chr13	37427555:37427812:37439673:37439895:37446794:37447052,	37439674	37439895	37439797	37439797	Frame_Shift_Del	G	-	p.R294fs
LIHC	TCGA-G3-A3CJ-01	POSTN	ENST00000379742.4	chr13	38143880:38143958:38144716:38144806:38145505:38145565,38143880:38143958:38144716:38144806:38151889:38151934,	38144717	38144806	38144780	38144780	Frame_Shift_Del	T	-	p.I737fs
LIHC	TCGA-G3-A3CJ-01	TRPC4	ENST00000379681.3,ENST00000379705.3,ENST00000379673.2,ENST00000355779.2,ENST00000447043.1,ENST00000426868.2,ENST00000358477.2	chr13	38266203:38266472:38320073:38320592:38357092:38357470,	38320074	38320592	38320284	38320284	Frame_Shift_Del	T	-	p.E229fs
LIHC	TCGA-G3-A3CJ-01	COG6	ENST00000455146.3,ENST00000356576.4,ENST00000416691.1	chr13	40268770:40268862:40273637:40273755:40293372:40293504,	40273638	40273755	40273702	40273702	Frame_Shift_Del	A	-	p.K412fs
LIHC	TCGA-G3-A3CJ-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340959	41340959	Frame_Shift_Del	G	-	p.P121fs
LIHC	TCGA-G3-A3CJ-01	WBP4	ENST00000542082.1,ENST00000379487.3	chr13	41650179:41650373:41654781:41654945:41656839:41657332,	41654782	41654945	41654831	41654831	Frame_Shift_Del	A	-	p.E269fs
LIHC	TCGA-G3-A3CJ-01	VWA8	ENST00000281496.6,ENST00000379310.3	chr13	42301329:42301449:42303677:42303813:42306215:42306291,	42303678	42303813	42303732	42303732	Frame_Shift_Del	T	-	p.T862fs
LIHC	TCGA-G3-A3CJ-01	EPSTI1	ENST00000540470.1,ENST00000476830.2,ENST00000398762.3,ENST00000313640.7,ENST00000537828.1,ENST00000535677.1,ENST00000313624.7	chr13	43500526:43500565:43528083:43528157:43537390:43537474,	43528084	43528157	43528133	43528133	Frame_Shift_Del	T	-	p.R172fs
LIHC	TCGA-G3-A3CJ-01	ENOX1	ENST00000261488.6,ENST00000540032.1,ENST00000412891.1	chr13	43896519:43896637:43900554:43900661:43918673:43918886,	43900555	43900661	43900593	43900593	Frame_Shift_Del	G	-	p.Q369fs
LIHC	TCGA-G3-A3CJ-01	LACC1	ENST00000441843.1,ENST00000325686.6	chr13	44462892:44463118:44464249:44464410:44465584:44468067,	44464250	44464410	44464370	44464370	Frame_Shift_Del	T	-	p.N418fs
LIHC	TCGA-G3-A3CJ-01	LCP1	ENST00000323076.2,ENST00000398576.2	chr13	46718576:46718655:46721042:46721238:46722486:46722582,	46721043	46721238	46721052	46721052	Frame_Shift_Del	C	-	p.A389fs
LIHC	TCGA-G3-A3CJ-01	LRRC63	ENST00000378805.3,ENST00000446175.1,ENST00000595396.1	chr13	46787169:46787254:46801646:46802324:46802799:46802868,	46801647	46802324	46801886	46801886	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-G3-A3CJ-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469818	47469818	Frame_Shift_Del	T	-	p.N75fs
LIHC	TCGA-G3-A3CJ-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469854	47469854	Frame_Shift_Del	G	-	p.P63fs
LIHC	TCGA-G3-A3CJ-01	SUCLA2	ENST00000544100.1,ENST00000543413.1,ENST00000378654.3,ENST00000534875.1,ENST00000467222.1	chr13	48523074:48523163:48523617:48523738:48528274:48528417,	48523618	48523738	48523648	48523648	Frame_Shift_Del	T	-	p.I400fs
LIHC	TCGA-G3-A3CJ-01	MED4	ENST00000258648.2,ENST00000417167.1,ENST00000378586.1	chr13	48651306:48651447:48653979:48654111:48655780:48655867,	48653980	48654111	48654095	48654095	Frame_Shift_Del	G	-	p.P175fs
LIHC	TCGA-G3-A3CJ-01	MED4	ENST00000258648.2,ENST00000417167.1,ENST00000378586.1	chr13	48657506:48657564:48660417:48660588:48664487:48664554,	48660418	48660588	48660487	48660487	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-G3-A3CJ-01	MED4	ENST00000258648.2,ENST00000417167.1,ENST00000378586.1	chr13	48657506:48657564:48660417:48660588:48664487:48664554,	48660418	48660588	48660543	48660543	Frame_Shift_Del	T	-	p.M80fs
LIHC	TCGA-G3-A3CJ-01	MED4	ENST00000258648.2	chr13	48660417:48660588:48664487:48664554:48669195:48669267,48660417:48660588:48664487:48664554:48669089:48669204,	48664488	48664554	48664492	48664492	Frame_Shift_Del	T	-	p.N63fs
LIHC	TCGA-G3-A3CJ-01	CDADC1	ENST00000251108.6	chr13	49829974:49830049:49833481:49833659:49840014:49840046,49829974:49830049:49833481:49833659:49841625:49841661,	49833482	49833659	49833584	49833584	Frame_Shift_Del	G	-	p.G119fs
LIHC	TCGA-G3-A3CJ-01	CDADC1	ENST00000251108.6	chr13	49829974:49830049:49833481:49833659:49840014:49840046,49829974:49830049:49833481:49833659:49841625:49841661,	49833482	49833659	49833613	49833613	Frame_Shift_Del	T	-	p.Y128fs
LIHC	TCGA-G3-A3CJ-01	CDADC1	ENST00000251108.6,ENST00000444959.1	chr13	49841625:49842195:49848426:49848476:49852485:49852655,	49848427	49848476	49848435	49848435	Frame_Shift_Del	A	-	p.K337fs
LIHC	TCGA-G3-A3CJ-01	SETDB2	ENST00000258672.5,ENST00000317257.8	chr13	50018894:50018993:50025688:50026045:50034242:50034368,	50025689	50026045	50026037	50026037	Frame_Shift_Del	A	-	p.E3fs
LIHC	TCGA-G3-A3CJ-01	SETDB2	ENST00000317257.8,ENST00000354234.4	chr13	50059765:50059859:50062425:50062766:50064957:50065046,	50062426	50062766	50062599	50062599	Frame_Shift_Del	C	-	p.P584fs
LIHC	TCGA-G3-A3CJ-01	SETDB2	ENST00000317257.8,ENST00000354234.4	chr13	50059765:50059859:50062425:50062766:50064957:50065046,	50062426	50062766	50062651	50062651	Frame_Shift_Del	A	-	p.E602fs
LIHC	TCGA-G3-A3CJ-01	EBPL	ENST00000378284.2	chr13	50234969:50235344:50237192:50237331:50243912:50243978,50236038:50236063:50237192:50237331:50243912:50243982,	50237193	50237331	50237291	50237291	Frame_Shift_Del	A	-	p.F94fs
LIHC	TCGA-G3-A3CJ-01	INTS6	ENST00000420668.2	chr13	51961555:51961676:51963454:51963580:51969435:51969619,51961555:51961676:51963454:51963580:52004429:52004519,	51963455	51963580	51963483	51963483	Frame_Shift_Del	T	-	p.K237fs
LIHC	TCGA-G3-A3CJ-01	INTS6	ENST00000425000.1,ENST00000491723.1,ENST00000485178.1,ENST00000469430.1,ENST00000311234.4,ENST00000420668.2,ENST00000463928.1,ENST00000461515.1,ENST00000486195.2,ENST00000483288.1,ENST00000398119.2	chr13	52004440:52004519:52025160:52025310:52026113:52026191,	52025161	52025310	52025264	52025264	Frame_Shift_Del	T	-	p.N79fs
LIHC	TCGA-G3-A3CJ-01	DHRS12	ENST00000280056.2	chr13	52343291:52343429:52345956:52346047:52348065:52348170,52344919:52345631:52345956:52346047:52348065:52348170,	52345957	52346047	52345990	52345990	Frame_Shift_Del	A	-	p.S177fs
LIHC	TCGA-G3-A3CJ-01	ATP7B	ENST00000400370.3,ENST00000417240.2,ENST00000242839.4,ENST00000344297.5,ENST00000448424.2,ENST00000418097.2,ENST00000400366.3	chr13	52511411:52511529:52511611:52511815:52513186:52513329,	52511612	52511815	52511741	52511741	Frame_Shift_Del	T	-	p.K1258fs
LIHC	TCGA-G3-A3CJ-01	ATP7B	ENST00000242839.4,ENST00000418097.2,ENST00000400366.3	chr13	52531651:52531743:52532446:52532680:52534283:52534458,	52532447	52532680	52532489	52532489	Frame_Shift_Del	A	-	p.F771fs
LIHC	TCGA-G3-A3CJ-01	ALG11	ENST00000521508.1	chr13	52586549:52586598:52593048:52593279:52598141:52599073,	52593049	52593279	52593275	52593275	Frame_Shift_Del	A	-	p.K92fs
LIHC	TCGA-G3-A3CJ-01	NEK5	ENST00000355568.4,ENST00000465811.3	chr13	52678633:52678688:52682453:52682540:52684475:52684546,	52682454	52682540	52682490	52682490	Frame_Shift_Del	G	-	p.P173fs
LIHC	TCGA-G3-A3CJ-01	NEK3	ENST00000551355.1	chr13	52728251:52728308:52730209:52730383:52733677:52733685,52728029:52728127:52730209:52730383:52733677:52733685,	52730210	52730383	52730293	52730293	Frame_Shift_Del	C	-	p.E12fs
LIHC	TCGA-G3-A3CJ-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971502	52971502	Frame_Shift_Del	G	-	p.L296fs
LIHC	TCGA-G3-A3CJ-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971513	52971513	Frame_Shift_Del	T	-	p.N292fs
LIHC	TCGA-G3-A3CJ-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971756	52971756	Frame_Shift_Del	G	-	p.P211fs
LIHC	TCGA-G3-A3CJ-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971776	52971776	Frame_Shift_Del	A	-	p.F204fs
LIHC	TCGA-G3-A3CJ-01	VPS36	ENST00000378060.4	chr13	53001321:53001354:53007796:53007883:53008927:53009017,	53007797	53007883	53007826	53007826	Frame_Shift_Del	T	-	p.R167fs
LIHC	TCGA-G3-A3CJ-01	VPS36	ENST00000475375.1	chr13	53013232:53013303:53016511:53016580:53024633:53024757,	53016512	53016580	53016532	53016532	Frame_Shift_Del	A	-	p.W49fs
LIHC	TCGA-G3-A3CJ-01	DIAPH3	ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4	chr13	60616823:60616954:60667761:60667866:60686143:60686320,	60667762	60667866	60667801	60667801	Frame_Shift_Del	T	-	p.K152fs
LIHC	TCGA-G3-A3CJ-01	DIAPH3	ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4	chr13	60616823:60616954:60667761:60667866:60686143:60686320,	60667762	60667866	60667838	60667838	Frame_Shift_Del	T	-	p.K140fs
LIHC	TCGA-G3-A3CJ-01	DIAPH3	ENST00000377908.2	chr13	60667761:60667866:60686143:60686320:60707090:60707123,60667761:60667866:60686143:60686320:60737720:60737900,	60686144	60686320	60686214	60686214	Frame_Shift_Del	A	-	p.L107fs
LIHC	TCGA-G3-A3CJ-01	TDRD3	ENST00000377882.3,ENST00000377894.2,ENST00000196169.3	chr13	61013821:61013906:61018820:61018882:61034513:61034674,	61018821	61018882	61018878	61018878	Frame_Shift_Del	A	-	p.E63fs
LIHC	TCGA-G3-A3CJ-01	TDRD3	ENST00000377881.2,ENST00000535286.1	chr13	61013821:61013906:61018816:61018882:61034513:61034674,	61018817	61018882	61018878	61018878	Frame_Shift_Del	A	-	p.E63fs
LIHC	TCGA-G3-A3CJ-01	TDRD3	ENST00000377881.2,ENST00000377882.3,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61041371:61041513:61057908:61057980:61059932:61060033,	61057909	61057980	61057917	61057917	Frame_Shift_Del	A	-	p.S75fs
LIHC	TCGA-G3-A3CJ-01	PIBF1	ENST00000326291.6	chr13	73482668:73482819:73491213:73491304:73505302:73505405,	73491214	73491304	73491244	73491244	Frame_Shift_Del	T	-	p.L557fs
LIHC	TCGA-G3-A3CJ-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2,ENST00000425511.1	chr13	75930282:75930387:75933904:75933994:75936161:75936743,	75933905	75933994	75933936	75933936	Frame_Shift_Del	T	-	p.K380fs
LIHC	TCGA-G3-A3CJ-01	LMO7	ENST00000465261.2,ENST00000321797.8,ENST00000377534.3,ENST00000357063.3	chr13	76378455:76378677:76379614:76379896:76381615:76381823,	76379615	76379896	76379775	76379775	Frame_Shift_Del	C	-	p.P411fs
LIHC	TCGA-G3-A3CJ-01	LMO7	ENST00000447038.1	chr13	76378455:76378677:76381615:76382335:76383289:76383319,	76381616	76382335	76381620	76381620	Frame_Shift_Del	T	-	p.F453fs
LIHC	TCGA-G3-A3CJ-01	LMO7	ENST00000447038.1	chr13	76378455:76378677:76381615:76382335:76383289:76383319,	76381616	76382335	76381636	76381636	Frame_Shift_Del	C	-	p.A458fs
LIHC	TCGA-G3-A3CJ-01	MYCBP2	ENST00000357337.6,ENST00000429715.1,ENST00000544440.2,ENST00000407578.2	chr13	77631120:77631228:77632352:77632541:77633657:77633761,	77632353	77632541	77632477	77632477	Frame_Shift_Del	T	-	p.N4402fs
LIHC	TCGA-G3-A3CJ-01	MYCBP2	ENST00000357337.6,ENST00000429715.1,ENST00000544440.2,ENST00000407578.2	chr13	77631120:77631228:77632352:77632541:77633657:77633761,	77632353	77632541	77632505	77632505	Frame_Shift_Del	A	-	p.C4393fs
LIHC	TCGA-G3-A3CJ-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77644765:77644846:77650885:77650984:77651282:77651522,	77650886	77650984	77650928	77650928	Frame_Shift_Del	T	-	p.K3927fs
LIHC	TCGA-G3-A3CJ-01	MYCBP2	ENST00000429715.1	chr13	77644765:77644846:77650894:77650984:77651282:77651522,	77650895	77650984	77650928	77650928	Frame_Shift_Del	T	-	p.K3927fs
LIHC	TCGA-G3-A3CJ-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671604	77671604	Frame_Shift_Del	G	-	p.Q3229fs
LIHC	TCGA-G3-A3CJ-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671893	77671893	Frame_Shift_Del	T	-	p.K3132fs
LIHC	TCGA-G3-A3CJ-01	SCEL	ENST00000535157.1,ENST00000349847.3,ENST00000469982.1,ENST00000377246.3	chr13	78187025:78187076:78188027:78188090:78191733:78191776,	78188028	78188090	78188077	78188077	Frame_Shift_Del	A	-	p.K438fs
LIHC	TCGA-G3-A3CJ-01	TGDS	ENST00000261296.5	chr13	95226307:95227106:95228567:95228665:95229624:95229683,	95228568	95228665	95228625	95228625	Frame_Shift_Del	T	-	p.I309fs
LIHC	TCGA-G3-A3CJ-01	ABCC4	ENST00000376887.4,ENST00000471041.1,ENST00000412704.1	chr13	95695935:95696041:95696519:95696692:95705348:95705438,	95696520	95696692	95696618	95696618	Frame_Shift_Del	A	-	p.F1177fs
LIHC	TCGA-G3-A3CJ-01	ABCC4	ENST00000431522.1,ENST00000536256.1	chr13	95735393:95735544:95768175:95768255:95813442:95813589,95748024:95748433:95768175:95768255:95813442:95813589,	95768176	95768255	95768246	95768246	Frame_Shift_Del	A	-	p.L822fs
LIHC	TCGA-G3-A3CJ-01	ABCC4	ENST00000376887.4,ENST00000412704.1,ENST00000431522.1,ENST00000536256.1	chr13	95813442:95813589:95815375:95815470:95815863:95815901,	95815376	95815470	95815435	95815435	Frame_Shift_Del	T	-	p.N750fs
LIHC	TCGA-G3-A3CJ-01	DNAJC3	ENST00000602402.1	chr13	96375495:96375620:96377431:96377506:96409897:96410050,	96377432	96377506	96377498	96377498	Frame_Shift_Del	A	-	p.K130fs
LIHC	TCGA-G3-A3CJ-01	UGGT2	ENST00000376747.3	chr13	96511844:96511929:96513041:96513137:96515882:96515968,	96513042	96513137	96513105	96513105	Frame_Shift_Del	T	-	p.K1226fs
LIHC	TCGA-G3-A3CJ-01	UGGT2	ENST00000461329.1,ENST00000465196.1,ENST00000376747.3,ENST00000397618.3	chr13	96638586:96638686:96642226:96642327:96648316:96648389,	96642227	96642327	96642282	96642282	Frame_Shift_Del	T	-	p.K292fs
LIHC	TCGA-G3-A3CJ-01	FARP1	ENST00000376586.2,ENST00000319562.6	chr13	98795733:98795746:98865473:98865667:98996015:98996066,	98865474	98865667	98865599	98865599	Frame_Shift_Del	C	-	p.P35fs
LIHC	TCGA-G3-A3CJ-01	FARP1	ENST00000595437.1,ENST00000376586.2,ENST00000319562.6	chr13	99091057:99091126:99091360:99091450:99092214:99092297,	99091361	99091450	99091389	99091389	Frame_Shift_Del	G	-	p.R822fs
LIHC	TCGA-G3-A3CJ-01	DOCK9	ENST00000449796.1,ENST00000448493.2,ENST00000339416.2,ENST00000340449.3,ENST00000376460.1	chr13	99483649:99483784:99483902:99484040:99489747:99489863,	99483903	99484040	99483963	99483963	Frame_Shift_Del	T	-	p.K1441fs
LIHC	TCGA-G3-A3CJ-01	DOCK9	ENST00000442173.1,ENST00000448493.2,ENST00000339416.2,ENST00000376460.1	chr13	99540885:99540965:99549741:99549864:99550432:99550515,	99549742	99549864	99549826	99549826	Frame_Shift_Del	T	-	p.N542fs
LIHC	TCGA-G3-A3CJ-01	UBAC2	ENST00000468067.1,ENST00000403766.3,ENST00000473091.1	chr13	99896085:99896205:99896768:99896878:99966350:99966474,	99896769	99896878	99896772	99896772	Frame_Shift_Del	T	-	p.F95fs
LIHC	TCGA-G3-A3CJ-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181814	100181814	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-G3-A3CJ-01	PCCA	ENST00000376285.1,ENST00000376279.3,ENST00000376286.4	chr13	100809540:100809594:100861585:100861717:100888095:100888132,	100861586	100861717	100861673	100861673	Frame_Shift_Del	A	-	p.K186fs
LIHC	TCGA-G3-A3CJ-01	PCCA	ENST00000443601.1,ENST00000376285.1,ENST00000376279.3,ENST00000376286.4	chr13	100962086:100962162:100982814:100982925:100992410:100992513,	100982815	100982925	100982892	100982892	Frame_Shift_Del	T	-	p.F503fs
LIHC	TCGA-G3-A3CJ-01	NALCN	ENST00000470333.1,ENST00000376200.5,ENST00000376196.3,ENST00000497170.1,ENST00000251127.6	chr13	102029267:102029407:102030920:102031004:102047533:102047716,	102030921	102031004	102030966	102030966	Frame_Shift_Del	A	-	p.F110fs
LIHC	TCGA-G3-A3CJ-01	TPP2	ENST00000376052.3	chr13	103301757:103301836:103309405:103309557:103315997:103316094,103303708:103303747:103309405:103309557:103315997:103316094,	103309406	103309557	103309514	103309514	Frame_Shift_Del	T	-	p.F1034fs
LIHC	TCGA-G3-A3CJ-01	KDELC1	ENST00000484943.2,ENST00000376004.4,ENST00000460338.1	chr13	103436636:103436862:103438581:103438689:103440183:103440273,	103438582	103438689	103438659	103438659	Frame_Shift_Del	G	-	p.Q472fs
LIHC	TCGA-G3-A3CJ-01	TNFSF13B	ENST00000375887.4	chr13	108922687:108922772:108939150:108939207:108955600:108955713,	108939151	108939207	108939202	108939202	Frame_Shift_Del	A	-	p.Q159fs
LIHC	TCGA-G3-A3CJ-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109617108:109617250:109644723:109644796:109661244:109661397,	109644724	109644796	109644756	109644756	Frame_Shift_Del	T	-	p.I779fs
LIHC	TCGA-G3-A3CJ-01	COL4A1	ENST00000375820.4	chr13	110822893:110823079:110825066:110825117:110826246:110826345,	110825067	110825117	110825087	110825087	Frame_Shift_Del	G	-	p.P1179fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF7	ENST00000478679.1,ENST00000375737.5,ENST00000375739.2,ENST00000370623.3,ENST00000375741.2,ENST00000375723.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5	chr13	111932884:111933024:111935485:111935710:111938493:111938583,	111935486	111935710	111935497	111935497	Frame_Shift_Del	C	-	p.H600fs
LIHC	TCGA-G3-A3CJ-01	TUBGCP3	ENST00000261965.3	chr13	113140157:113140465:113143894:113144011:113153358:113153499,	113143895	113144011	113143971	113143971	Frame_Shift_Del	T	-	p.N830fs
LIHC	TCGA-G3-A3CJ-01	F7	ENST00000375581.3	chr13	113760152:113760219:113761158:113761224:113765003:113765164,	113761159	113761224	113761211	113761211	Frame_Shift_Del	G	-	p.P39fs
LIHC	TCGA-G3-A3CJ-01	LAMP1	ENST00000472564.1,ENST00000332556.4	chr13	113960799:113960921:113963957:113964177:113965023:113965182,	113963958	113964177	113964130	113964130	Frame_Shift_Del	T	-	p.V119fs
LIHC	TCGA-G3-A3CJ-01	DCUN1D2	ENST00000496873.1	chr13	114128524:114128569:114134889:114135058:114144981:114145006,	114134890	114135058	114135011	114135011	Frame_Shift_Del	A	-	p.C90fs
LIHC	TCGA-G3-A3CJ-01	TMCO3	ENST00000375391.1,ENST00000474393.1,ENST00000434316.2	chr13	114152656:114152836:114154272:114154464:114156066:114156195,	114154273	114154464	114154326	114154326	Frame_Shift_Del	T	-	p.N226fs
LIHC	TCGA-G3-A3CJ-01	TMCO3	ENST00000434316.2	chr13	114174930:114175048:114188359:114188555:114193671:114193797,	114188360	114188555	114188425	114188425	Frame_Shift_Del	T	-	p.V470fs
LIHC	TCGA-G3-A3CJ-01	TFDP1	ENST00000408980.2,ENST00000375370.5,ENST00000453989.1,ENST00000475254.1	chr13	114277494:114277601:114285937:114286059:114287434:114287596,	114285938	114286059	114286013	114286013	Frame_Shift_Del	T	-	p.F88fs
LIHC	TCGA-G3-A3CJ-01	TFDP1	ENST00000465174.1	chr13	114277494:114277601:114285937:114286220:114287434:114287596,	114285938	114286220	114286013	114286013	Frame_Shift_Del	T	-	p.F88fs
LIHC	TCGA-G3-A3CJ-01	RASA3	ENST00000389544.4,ENST00000334062.7	chr13	114748437:114748833:114751085:114751269:114757960:114758064,	114751086	114751269	114751150	114751150	Frame_Shift_Del	C	-	p.A789fs
LIHC	TCGA-G3-A3CJ-01	RASA3	ENST00000389544.4,ENST00000334062.7	chr13	114748437:114748833:114751085:114751269:114757960:114758064,	114751086	114751269	114751205	114751205	Frame_Shift_Del	A	-	p.I770fs
LIHC	TCGA-G3-A3CJ-01	CDC16	ENST00000356221.3,ENST00000252458.6,ENST00000375308.1,ENST00000360383.3,ENST00000375310.1,ENST00000484907.1,ENST00000252457.5,ENST00000375312.3	chr13	115024809:115024873:115027361:115027423:115028353:115028454,	115027362	115027423	115027415	115027415	Frame_Shift_Del	A	-	p.R456fs
LIHC	TCGA-G3-A3CJ-01	CDC16	ENST00000356221.3,ENST00000252458.6,ENST00000375308.1,ENST00000360383.3,ENST00000375310.1,ENST00000252457.5,ENST00000375312.3	chr13	115028353:115028489:115030624:115030715:115037658:115037952,	115030625	115030715	115030652	115030652	Frame_Shift_Del	T	-	p.F514fs
LIHC	TCGA-G3-A3CJ-01	UPF3A	ENST00000475218.2,ENST00000375299.3,ENST00000351487.5	chr13	115064314:115064475:115067205:115067500:115070263:115070424,	115067206	115067500	115067361	115067361	Frame_Shift_Del	G	-	p.W388fs
LIHC	TCGA-G3-A3CJ-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846332	20846332	Frame_Shift_Del	C	-	p.A1858fs
LIHC	TCGA-G3-A3CJ-01	OSGEP	ENST00000206542.4	chr14	20917122:20917172:20917329:20917425:20920132:20920308,	20917330	20917425	20917353	20917353	Frame_Shift_Del	C	-	p.D162fs
LIHC	TCGA-G3-A3CJ-01	OSGEP	ENST00000555223.1	chr14	20917122:20917172:20917329:20917460:20920132:20920308,	20917330	20917460	20917353	20917353	Frame_Shift_Del	C	-	p.D162fs
LIHC	TCGA-G3-A3CJ-01	OSGEP	ENST00000206542.4	chr14	20917380:20917425:20920132:20920308:20920487:20920607,	20920133	20920308	20920140	20920140	Frame_Shift_Del	T	-	p.N135fs
LIHC	TCGA-G3-A3CJ-01	NDRG2	ENST00000397858.1,ENST00000555869.1,ENST00000298687.5,ENST00000554104.1,ENST00000557353.1,ENST00000556147.1,ENST00000397856.3,ENST00000557182.1,ENST00000556008.1,ENST00000397847.2,ENST00000555733.1,ENST00000555695.1,ENST00000397844.2,ENST00000555158.1,ENST00000557169.1,ENST00000403829.3,ENST00000360463.3,ENST00000556366.1,ENST00000554143.1,ENST00000350792.3,ENST00000397851.2,ENST00000553593.1,ENST00000556974.1,ENST00000553867.1,ENST00000553503.1,ENST00000397853.3,ENST00000555026.1,ENST00000554277.1	chr14	21487856:21487901:21488078:21488135:21488654:21488741,	21488079	21488135	21488097	21488097	Frame_Shift_Del	A	-	p.L198fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546604	21546604	Frame_Shift_Del	G	-	p.G736fs
LIHC	TCGA-G3-A3CJ-01	ARHGEF40	ENST00000554514.1,ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000555232.1,ENST00000553709.1	chr14	21550989:21551076:21551993:21552209:21552911:21553082,	21551994	21552209	21552028	21552028	Frame_Shift_Del	C	-	p.A1203fs
LIHC	TCGA-G3-A3CJ-01	HNRNPC	ENST00000555309.1,ENST00000554417.1,ENST00000557201.1,ENST00000556513.1,ENST00000554539.1,ENST00000320084.7,ENST00000554383.1,ENST00000555914.1,ENST00000554455.1,ENST00000420743.2,ENST00000556897.1,ENST00000556628.1,ENST00000430246.2,ENST00000553300.1,ENST00000556142.1,ENST00000557157.1,ENST00000553753.1,ENST00000449098.1,ENST00000336053.6,ENST00000554969.1	chr14	21679968:21680082:21681118:21681276:21698477:21698525,	21681119	21681276	21681175	21681175	Frame_Shift_Del	C	-	p.G156fs
LIHC	TCGA-G3-A3CJ-01	SUPT16H	ENST00000556309.1	chr14	21838494:21838647:21840032:21840129:21841496:21841589,	21840033	21840129	21840120	21840120	Frame_Shift_Del	T	-	p.K81fs
LIHC	TCGA-G3-A3CJ-01	SUPT16H	ENST00000216297.2,ENST00000556217.1	chr14	21838494:21838647:21840032:21840203:21841496:21841589,	21840033	21840203	21840120	21840120	Frame_Shift_Del	T	-	p.K81fs
LIHC	TCGA-G3-A3CJ-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21878009:21878147:21881071:21881155:21882459:21882577,	21881072	21881155	21881074	21881074	Frame_Shift_Del	C	-	p.E742fs
LIHC	TCGA-G3-A3CJ-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21878009:21878147:21881071:21881155:21882459:21882577,	21881072	21881155	21881144	21881144	Frame_Shift_Del	G	-	p.P718fs
LIHC	TCGA-G3-A3CJ-01	CHD8	ENST00000399982.2,ENST00000430710.3,ENST00000557364.1	chr14	21881071:21881155:21882459:21882577:21883096:21883152,	21882460	21882577	21882511	21882511	Frame_Shift_Del	T	-	p.K697fs
LIHC	TCGA-G3-A3CJ-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21991715	21991715	Frame_Shift_Del	C	-	p.G716fs
LIHC	TCGA-G3-A3CJ-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992238	21992238	Frame_Shift_Del	T	-	p.S543fs
LIHC	TCGA-G3-A3CJ-01	SLC7A7	ENST00000397532.3,ENST00000397528.4,ENST00000556287.1,ENST00000555702.1	chr14	23249134:23249260:23282108:23282649:23284522:23284660,23249134:23249260:23282108:23282649:23284528:23284660,	23282109	23282649	23282440	23282440	Frame_Shift_Del	A	-	p.F56fs
LIHC	TCGA-G3-A3CJ-01	LRP10	ENST00000546834.1,ENST00000359591.4	chr14	23341946:23341991:23342519:23342655:23344263:23344454,	23342520	23342655	23342530	23342530	Frame_Shift_Del	C	-	p.D30fs
LIHC	TCGA-G3-A3CJ-01	CDH24	ENST00000397359.3,ENST00000267383.5	chr14	23519030:23519152:23521178:23521292:23521681:23521795,	23521179	23521292	23521208	23521208	Frame_Shift_Del	G	-	p.P483fs
LIHC	TCGA-G3-A3CJ-01	ACIN1	ENST00000557515.1,ENST00000555053.1,ENST00000338631.6,ENST00000397341.3,ENST00000473758.1,ENST00000357481.2,ENST00000555395.1,ENST00000262710.1,ENST00000605057.1,ENST00000457657.1,ENST00000555478.1	chr14	23530780:23530831:23531376:23531484:23531624:23531732,	23531377	23531484	23531424	23531424	Frame_Shift_Del	G	-	p.Q1076fs
LIHC	TCGA-G3-A3CJ-01	SLC7A8	ENST00000532568.1,ENST00000529705.2,ENST00000316902.7,ENST00000453702.1	chr14	23608632:23608756:23609679:23609833:23612287:23612385,	23609680	23609833	23609739	23609739	Frame_Shift_Del	A	-	p.F243fs
LIHC	TCGA-G3-A3CJ-01	SLC22A17	ENST00000397267.1,ENST00000206544.8,ENST00000397260.3,ENST00000354772.3	chr14	23817099:23817205:23817369:23817515:23817714:23817755,	23817370	23817515	23817412	23817412	Frame_Shift_Del	G	-	p.H266fs
LIHC	TCGA-G3-A3CJ-01	SLC22A17	ENST00000473917.1,ENST00000397267.1,ENST00000206544.8,ENST00000397260.3,ENST00000354772.3	chr14	23817369:23817515:23817714:23817880:23818480:23818635,	23817715	23817880	23817818	23817818	Frame_Shift_Del	C	-	p.V197fs
LIHC	TCGA-G3-A3CJ-01	NGDN	ENST00000408901.3,ENST00000556483.1,ENST00000397154.3,ENST00000553439.1,ENST00000556022.1,ENST00000556580.1	chr14	23945553:23945616:23946408:23946565:23946711:23946747,	23946409	23946565	23946439	23946439	Frame_Shift_Del	T	-	p.R248fs
LIHC	TCGA-G3-A3CJ-01	AP1G2	ENST00000465445.2,ENST00000556277.1,ENST00000397120.3,ENST00000308724.5,ENST00000535852.2,ENST00000460049.2	chr14	24033824:24033869:24034327:24034408:24034814:24034910,	24034328	24034408	24034330	24034330	Frame_Shift_Del	G	-	p.Q274fs
LIHC	TCGA-G3-A3CJ-01	DHRS2	ENST00000432832.2,ENST00000250383.6,ENST00000556729.1,ENST00000344777.7,ENST00000556701.1,ENST00000553896.1	chr14	24108035:24108213:24108387:24108565:24109002:24109104,	24108388	24108565	24108490	24108490	Frame_Shift_Del	G	-	p.Q81fs
LIHC	TCGA-G3-A3CJ-01	TSSK4	ENST00000287913.6,ENST00000556621.1	chr14	24675714:24675929:24676351:24676715:24677169:24677454,	24676352	24676715	24676482	24676482	Frame_Shift_Del	T	-	p.F201fs
LIHC	TCGA-G3-A3CJ-01	GMPR2	ENST00000559409.1	chr14	24702424:24702546:24702684:24702792:24704942:24705022,	24702685	24702792	24702709	24702709	Frame_Shift_Del	T	-	p.F56fs
LIHC	TCGA-G3-A3CJ-01	GMPR2	ENST00000558701.1,ENST00000559287.1,ENST00000559102.1	chr14	24702424:24702546:24702684:24702799:24704942:24705022,	24702685	24702799	24702709	24702709	Frame_Shift_Del	T	-	p.F56fs
LIHC	TCGA-G3-A3CJ-01	GMPR2	ENST00000456667.3	chr14	24702424:24702546:24702684:24702804:24704942:24705022,24702424:24702546:24702684:24702804:24705172:24705211,	24702685	24702804	24702709	24702709	Frame_Shift_Del	T	-	p.F56fs
LIHC	TCGA-G3-A3CJ-01	RABGGTA	ENST00000560871.1	chr14	24737574:24737626:24737719:24738032:24738116:24738199,	24737720	24738032	24737725	24737725	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-G3-A3CJ-01	RABGGTA	ENST00000216840.6,ENST00000559551.1,ENST00000558376.1,ENST00000560998.1,ENST00000399409.3,ENST00000559974.1,ENST00000543002.1	chr14	24737574:24737626:24737719:24737825:24737930:24738032,	24737720	24737825	24737725	24737725	Frame_Shift_Del	A	-	p.L334fs
LIHC	TCGA-G3-A3CJ-01	DHRS1	ENST00000559483.1,ENST00000288111.7,ENST00000561273.1,ENST00000558340.1,ENST00000396813.1	chr14	24765714:24765794:24765943:24766087:24768162:24768336,	24765944	24766087	24765949	24765949	Frame_Shift_Del	C	-	p.V97fs
LIHC	TCGA-G3-A3CJ-01	NOP9	ENST00000267425.3,ENST00000396802.3,ENST00000557362.1	chr14	24771610:24771630:24772279:24772420:24772937:24773063,	24772280	24772420	24772284	24772284	Frame_Shift_Del	C	-	p.S383fs
LIHC	TCGA-G3-A3CJ-01	ADCY4	ENST00000310677.4,ENST00000554781.1,ENST00000554577.1,ENST00000396747.3,ENST00000554068.2,ENST00000418030.2,ENST00000557056.1	chr14	24792549:24792660:24793267:24793405:24793512:24793597,	24793268	24793405	24793385	24793385	Frame_Shift_Del	G	-	p.P643fs
LIHC	TCGA-G3-A3CJ-01	RIPK3	ENST00000554756.1,ENST00000216274.5	chr14	24807627:24807773:24808220:24808530:24808662:24808803,	24808221	24808530	24808407	24808407	Frame_Shift_Del	T	-	p.K95fs
LIHC	TCGA-G3-A3CJ-01	G2E3	ENST00000544007.1	chr14	31062797:31062845:31066625:31066732:31070975:31071100,	31066626	31066732	31066643	31066643	Frame_Shift_Del	G	-	p.A182fs
LIHC	TCGA-G3-A3CJ-01	SCFD1	ENST00000484733.2,ENST00000556534.1,ENST00000463622.2,ENST00000458591.2,ENST00000469043.1,ENST00000421551.3,ENST00000544052.2,ENST00000396629.2,ENST00000557076.1,ENST00000553693.1	chr14	31108982:31109070:31112521:31112611:31118733:31118789,	31112522	31112611	31112596	31112596	Frame_Shift_Del	T	-	p.F201fs
LIHC	TCGA-G3-A3CJ-01	SCFD1	ENST00000554819.1,ENST00000484733.2,ENST00000556768.1,ENST00000463622.2,ENST00000458591.2,ENST00000421551.3,ENST00000544052.2,ENST00000396629.2,ENST00000311943.7,ENST00000541123.1,ENST00000555259.1	chr14	31143129:31143203:31144189:31144271:31163978:31164064,	31144190	31144271	31144212	31144212	Frame_Shift_Del	A	-	p.K396fs
LIHC	TCGA-G3-A3CJ-01	COCH	ENST00000556908.1,ENST00000216361.4,ENST00000396618.3,ENST00000553833.1,ENST00000475087.1,ENST00000460581.2	chr14	31346779:31346934:31348016:31348150:31348628:31348691,	31348017	31348150	31348036	31348036	Frame_Shift_Del	G	-	p.G88fs
LIHC	TCGA-G3-A3CJ-01	HECTD1	ENST00000555843.1,ENST00000553957.1,ENST00000553700.1,ENST00000399332.1,ENST00000554882.1	chr14	31582636:31582690:31583082:31583265:31583491:31583534,	31583083	31583265	31583117	31583117	Frame_Shift_Del	T	-	p.N1941fs
LIHC	TCGA-G3-A3CJ-01	HECTD1	ENST00000555843.1,ENST00000553957.1,ENST00000553700.1,ENST00000399332.1,ENST00000554882.1	chr14	31583082:31583265:31583491:31583546:31585441:31585664,	31583492	31583546	31583494	31583494	Frame_Shift_Del	T	-	p.M1891fs
LIHC	TCGA-G3-A3CJ-01	HECTD1	ENST00000553957.1,ENST00000553700.1,ENST00000399332.1	chr14	31602714:31602881:31604077:31604401:31604681:31604821,	31604078	31604401	31604153	31604153	Frame_Shift_Del	A	-	p.F1168fs
LIHC	TCGA-G3-A3CJ-01	HEATR5A	ENST00000439727.1,ENST00000543095.2,ENST00000389961.3	chr14	31765114:31765269:31774110:31774383:31775937:31776085,31771500:31771725:31774110:31774383:31775937:31776016,	31774111	31774383	31774239	31774239	Frame_Shift_Del	T	-	p.N1704fs
LIHC	TCGA-G3-A3CJ-01	HEATR5A	ENST00000538864.2,ENST00000439727.1,ENST00000543095.2,ENST00000439348.1,ENST00000389961.3	chr14	31790704:31790886:31792770:31793010:31795368:31795548,	31792771	31793010	31792954	31792954	Frame_Shift_Del	C	-	p.D1203fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560089	32560089	Frame_Shift_Del	T	-	p.F72fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560518	32560518	Frame_Shift_Del	T	-	p.F215fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561374	32561374	Frame_Shift_Del	T	-	p.L500fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563347	32563347	Frame_Shift_Del	A	-	p.K1158fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563497	32563497	Frame_Shift_Del	A	-	p.K1208fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32563572	32563572	Frame_Shift_Del	A	-	p.K1233fs
LIHC	TCGA-G3-A3CJ-01	AKAP6	ENST00000280979.4,ENST00000555207.1,ENST00000555950.1,ENST00000557354.1,ENST00000557272.1	chr14	33147516:33147665:33165195:33165316:33201659:33201790,	33165196	33165316	33165206	33165206	Frame_Shift_Del	T	-	p.F964fs
LIHC	TCGA-G3-A3CJ-01	EGLN3	ENST00000553215.1,ENST00000556785.1,ENST00000250457.3	chr14	34394716:34395128:34396165:34396239:34398281:34398418,	34396166	34396239	34396186	34396186	Frame_Shift_Del	T	-	p.K224fs
LIHC	TCGA-G3-A3CJ-01	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3,ENST00000555416.1	chr14	35037097:35037219:35044961:35045048:35050766:35050806,	35044962	35045048	35045006	35045006	Frame_Shift_Del	A	-	p.S177fs
LIHC	TCGA-G3-A3CJ-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35234226:35234474:35240716:35240865:35242777:35242932,	35240717	35240865	35240849	35240849	Frame_Shift_Del	T	-	p.T1057fs
LIHC	TCGA-G3-A3CJ-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35280147:35280242:35295218:35295362:35331249:35331313,	35295219	35295362	35295311	35295311	Frame_Shift_Del	A	-	p.F148fs
LIHC	TCGA-G3-A3CJ-01	FAM177A1	ENST00000382406.3,ENST00000396472.1,ENST00000280987.4,ENST00000554794.1	chr14	35546355:35546422:35548132:35548230:35550227:35550309,	35548133	35548230	35548181	35548181	Frame_Shift_Del	C	-	p.T129fs
LIHC	TCGA-G3-A3CJ-01	PPP2R3C	ENST00000555726.1,ENST00000553273.1,ENST00000261475.5,ENST00000557217.1,ENST00000554222.1,ENST00000554361.1,ENST00000555614.1	chr14	35565914:35565970:35568457:35568590:35576509:35576580,	35568458	35568590	35568506	35568506	Frame_Shift_Del	A	-	p.C220fs
LIHC	TCGA-G3-A3CJ-01	PPP2R3C	ENST00000555726.1,ENST00000553273.1,ENST00000261475.5,ENST00000557217.1,ENST00000554222.1,ENST00000554361.1,ENST00000555614.1	chr14	35565914:35565970:35568457:35568590:35576509:35576580,	35568458	35568590	35568528	35568528	Frame_Shift_Del	T	-	p.K212fs
LIHC	TCGA-G3-A3CJ-01	NFKBIA	ENST00000557459.1,ENST00000557100.1,ENST00000557140.1	chr14	35872542:35872566:35872895:35873004:35873623:35873922,	35872896	35873004	35872972	35872972	Frame_Shift_Del	T	-	p.K87fs
LIHC	TCGA-G3-A3CJ-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000307138.6	chr14	36104669:36104804:36121010:36121079:36123572:36123683,	36121011	36121079	36121051	36121051	Frame_Shift_Del	A	-	p.L1420fs
LIHC	TCGA-G3-A3CJ-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000554704.1,ENST00000307138.6,ENST00000554652.1	chr14	36211573:36211771:36217790:36218030:36219687:36219735,	36217791	36218030	36217827	36217827	Frame_Shift_Del	C	-	p.R405fs
LIHC	TCGA-G3-A3CJ-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000554704.1,ENST00000307138.6,ENST00000554652.1	chr14	36211573:36211771:36217790:36218030:36219687:36219735,	36217791	36218030	36217838	36217838	Frame_Shift_Del	A	-	p.S403fs
LIHC	TCGA-G3-A3CJ-01	RALGAPA1	ENST00000553892.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000307138.6	chr14	36225998:36226114:36230034:36230212:36231915:36231959,	36230035	36230212	36230187	36230187	Frame_Shift_Del	A	-	p.F132fs
LIHC	TCGA-G3-A3CJ-01	MBIP	ENST00000604336.1,ENST00000359527.7,ENST00000603139.1,ENST00000318473.7,ENST00000605579.1,ENST00000416007.4	chr14	36780782:36780931:36781164:36781230:36783717:36783814,	36781165	36781230	36781187	36781187	Frame_Shift_Del	G	-	p.P205fs
LIHC	TCGA-G3-A3CJ-01	SFTA3	ENST00000418548.3	chr14	36943953:36944078:36960405:36960496:36982316:36982375,36946223:36946308:36960405:36960496:36982316:36982375,	36960406	36960496	36960432	36960432	Frame_Shift_Del	T	-	p.N36fs
LIHC	TCGA-G3-A3CJ-01	PAX9	ENST00000554201.1	chr14	37132101:37132728:37135666:37135796:37145402:37145560,	37135667	37135796	37135734	37135734	Frame_Shift_Del	C	-	p.F233fs
LIHC	TCGA-G3-A3CJ-01	PAX9	ENST00000402703.2,ENST00000361487.6	chr14	37132101:37132728:37135666:37135806:37145402:37145560,	37135667	37135806	37135734	37135734	Frame_Shift_Del	C	-	p.F233fs
LIHC	TCGA-G3-A3CJ-01	SLC25A21	ENST00000331299.5,ENST00000555449.1	chr14	37153032:37153085:37153948:37154130:37180522:37180687,	37153949	37154130	37153981	37153981	Frame_Shift_Del	A	-	p.F251fs
LIHC	TCGA-G3-A3CJ-01	MIPOL1	ENST00000539062.2,ENST00000556451.1,ENST00000327441.7,ENST00000536774.1,ENST00000396294.2,ENST00000545536.1,ENST00000537471.1	chr14	37838721:37838829:37892059:37892154:37969112:37969343,	37892060	37892154	37892111	37892111	Frame_Shift_Del	A	-	p.K331fs
LIHC	TCGA-G3-A3CJ-01	SEC23A	ENST00000536508.1,ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39532527:39532617:39534116:39534197:39536376:39536415,	39534117	39534197	39534181	39534181	Frame_Shift_Del	T	-	p.K213fs
LIHC	TCGA-G3-A3CJ-01	SEC23A	ENST00000545328.2	chr14	39556132:39556212:39560680:39560917:39562390:39562448,	39560681	39560917	39560853	39560853	Frame_Shift_Del	A	-	p.L144fs
LIHC	TCGA-G3-A3CJ-01	MIS18BP1	ENST00000310806.4,ENST00000554093.1,ENST00000469020.1	chr14	45679665:45679731:45686221:45686382:45687484:45687635,	45686222	45686382	45686241	45686241	Frame_Shift_Del	A	-	p.L995fs
LIHC	TCGA-G3-A3CJ-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693503	45693503	Frame_Shift_Del	A	-	p.Y763fs
LIHC	TCGA-G3-A3CJ-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693838	45693838	Frame_Shift_Del	A	-	p.L651fs
LIHC	TCGA-G3-A3CJ-01	MIS18BP1	ENST00000310806.4	chr14	45700343:45700501:45701935:45702023:45705016:45705147,	45701936	45702023	45701950	45701950	Frame_Shift_Del	A	-	p.F474fs
LIHC	TCGA-G3-A3CJ-01	MIS18BP1	ENST00000454990.1,ENST00000310806.4	chr14	45706899:45706924:45711236:45711721:45711963:45712077,	45711237	45711721	45711266	45711266	Frame_Shift_Del	T	-	p.T372fs
LIHC	TCGA-G3-A3CJ-01	LRR1	ENST00000298288.6,ENST00000540712.1	chr14	50069087:50069186:50074117:50074839:50080973:50081388,	50074118	50074839	50074262	50074262	Frame_Shift_Del	A	-	p.K144fs
LIHC	TCGA-G3-A3CJ-01	LRR1	ENST00000298288.6,ENST00000540712.1	chr14	50069087:50069186:50074117:50074839:50080973:50081388,	50074118	50074839	50074691	50074691	Frame_Shift_Del	T	-	p.F286fs
LIHC	TCGA-G3-A3CJ-01	POLE2	ENST00000554396.1,ENST00000539565.2,ENST00000556584.1,ENST00000216367.5	chr14	50121722:50121812:50122388:50122561:50130032:50130105,	50122389	50122561	50122437	50122437	Frame_Shift_Del	A	-	p.W268fs
LIHC	TCGA-G3-A3CJ-01	POLE2	ENST00000554396.1,ENST00000216367.5	chr14	50140840:50140934:50141067:50141145:50146442:50146518,	50141068	50141145	50141076	50141076	Frame_Shift_Del	T	-	p.K105fs
LIHC	TCGA-G3-A3CJ-01	KLHDC2	ENST00000556559.1,ENST00000554589.1,ENST00000298307.5,ENST00000555443.1,ENST00000554115.1	chr14	50246930:50247040:50247420:50247493:50249087:50249175,	50247421	50247493	50247447	50247447	Frame_Shift_Del	A	-	p.K304fs
LIHC	TCGA-G3-A3CJ-01	NEMF	ENST00000555411.1,ENST00000555970.1,ENST00000545773.1,ENST00000556925.1,ENST00000298310.5,ENST00000546046.1	chr14	50269170:50269291:50269386:50269445:50269954:50270012,	50269387	50269445	50269439	50269439	Frame_Shift_Del	T	-	p.K641fs
LIHC	TCGA-G3-A3CJ-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50597218:50597480:50600840:50600957:50605329:50605502,	50600841	50600957	50600913	50600913	Frame_Shift_Del	T	-	p.K1001fs
LIHC	TCGA-G3-A3CJ-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50597218:50597480:50600840:50600957:50605329:50605502,	50600841	50600957	50600934	50600934	Frame_Shift_Del	G	-	p.P994fs
LIHC	TCGA-G3-A3CJ-01	SOS2	ENST00000216373.5,ENST00000543680.1,ENST00000555794.1	chr14	50625282:50625364:50626148:50626804:50628199:50628327,	50626149	50626804	50626403	50626403	Frame_Shift_Del	T	-	p.N534fs
LIHC	TCGA-G3-A3CJ-01	SOS2	ENST00000216373.5,ENST00000543680.1,ENST00000555794.1	chr14	50625282:50625364:50626148:50626804:50628199:50628327,	50626149	50626804	50626664	50626664	Frame_Shift_Del	C	-	p.G446fs
LIHC	TCGA-G3-A3CJ-01	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51206089:51206205:51208299:51208446:51210133:51210247,	51208300	51208446	51208348	51208348	Frame_Shift_Del	T	-	p.K1800fs
LIHC	TCGA-G3-A3CJ-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223539	51223539	Frame_Shift_Del	T	-	p.K1403fs
LIHC	TCGA-G3-A3CJ-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223864	51223864	Frame_Shift_Del	T	-	p.K1296fs
LIHC	TCGA-G3-A3CJ-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51223972	51223972	Frame_Shift_Del	T	-	p.N1259fs
LIHC	TCGA-G3-A3CJ-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51224050	51224050	Frame_Shift_Del	T	-	p.K1234fs
LIHC	TCGA-G3-A3CJ-01	NIN	ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000389869.3	chr14	51221462:51221585:51223209:51225348:51226574:51227077,	51223210	51225348	51225335	51225335	Frame_Shift_Del	T	-	p.T805fs
LIHC	TCGA-G3-A3CJ-01	PSMC6	ENST00000556813.1,ENST00000445930.2,ENST00000555339.1,ENST00000553899.1,ENST00000458604.2,ENST00000606149.1	chr14	53175481:53175534:53177818:53177886:53178127:53178242,	53177819	53177886	53177857	53177857	Frame_Shift_Del	T	-	p.A113fs
LIHC	TCGA-G3-A3CJ-01	PSMC6	ENST00000445930.2,ENST00000606149.1	chr14	53184798:53184860:53184946:53185070:53190682:53190754,53184798:53184860:53184946:53185070:53185694:53185756,	53184947	53185070	53184984	53184984	Frame_Shift_Del	A	-	p.E224fs
LIHC	TCGA-G3-A3CJ-01	STYX	ENST00000442123.2,ENST00000354586.4	chr14	53217400:53217498:53223268:53223329:53224036:53224073,	53223269	53223329	53223294	53223294	Frame_Shift_Del	A	-	p.N90fs
LIHC	TCGA-G3-A3CJ-01	CDKN3	ENST00000556102.2,ENST00000335183.6,ENST00000541304.1,ENST00000556305.1,ENST00000458126.2,ENST00000543789.2	chr14	54866643:54866694:54868241:54868297:54875462:54875507,	54868242	54868297	54868281	54868281	Frame_Shift_Del	T	-	p.G44fs
LIHC	TCGA-G3-A3CJ-01	SAMD4A	ENST00000251091.5,ENST00000392067.3,ENST00000555192.1,ENST00000357634.3,ENST00000554335.1	chr14	55231172:55231258:55236821:55236940:55241651:55241853,	55236822	55236940	55236900	55236900	Frame_Shift_Del	A	-	p.K471fs
LIHC	TCGA-G3-A3CJ-01	WDHD1	ENST00000420358.2,ENST00000567693.1,ENST00000360586.3,ENST00000421192.1,ENST00000359167.4	chr14	55448257:55448414:55451440:55451578:55453863:55454105,	55451441	55451578	55451475	55451475	Frame_Shift_Del	T	-	p.K624fs
LIHC	TCGA-G3-A3CJ-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529567	55529567	Frame_Shift_Del	C	-	p.P85fs
LIHC	TCGA-G3-A3CJ-01	DLGAP5	ENST00000395425.2,ENST00000247191.2	chr14	55621334:55621524:55625239:55625459:55629688:55629793,	55625240	55625459	55625371	55625371	Frame_Shift_Del	T	-	p.N581fs
LIHC	TCGA-G3-A3CJ-01	DLGAP5	ENST00000395425.2,ENST00000247191.2	chr14	55621334:55621524:55625239:55625459:55629688:55629793,	55625240	55625459	55625454	55625454	Frame_Shift_Del	T	-	p.K553fs
LIHC	TCGA-G3-A3CJ-01	ATG14	ENST00000247178.5	chr14	55848679:55848909:55852576:55852814:55857628:55857710,	55852577	55852814	55852688	55852688	Frame_Shift_Del	T	-	p.K179fs
LIHC	TCGA-G3-A3CJ-01	KTN1	ENST00000438792.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000395314.3,ENST00000459737.1,ENST00000554890.1	chr14	56117045:56117136:56117286:56117355:56118607:56118645,	56117287	56117355	56117328	56117328	Frame_Shift_Del	A	-	p.G846fs
LIHC	TCGA-G3-A3CJ-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000553360.1,ENST00000395314.3,ENST00000459737.1,ENST00000555164.1,ENST00000395308.1,ENST00000395311.1	chr14	56119567:56119658:56119734:56119803:56120276:56120314,	56119735	56119803	56119748	56119748	Frame_Shift_Del	A	-	p.E903fs
LIHC	TCGA-G3-A3CJ-01	TMEM260	ENST00000539559.2,ENST00000261556.6,ENST00000556648.1,ENST00000536419.1,ENST00000556422.1,ENST00000555497.1	chr14	57099712:57099889:57101616:57101670:57103225:57103316,	57101617	57101670	57101634	57101634	Frame_Shift_Del	G	-	p.W581fs
LIHC	TCGA-G3-A3CJ-01	SLC35F4	ENST00000339762.6,ENST00000554729.1,ENST00000556826.1	chr14	58038611:58038737:58047931:58048151:58055933:58056228,	58047932	58048151	58048096	58048096	Frame_Shift_Del	T	-	p.R215fs
LIHC	TCGA-G3-A3CJ-01	ACTR10	ENST00000254286.4,ENST00000554402.2	chr14	58675716:58675825:58678009:58678117:58680348:58680416,	58678010	58678117	58678115	58678115	Frame_Shift_Del	C	-	p.P150fs
LIHC	TCGA-G3-A3CJ-01	PSMA3	ENST00000557087.1,ENST00000555931.1,ENST00000557508.1,ENST00000554812.1,ENST00000555743.1,ENST00000216455.4,ENST00000412908.2	chr14	58727686:58727738:58730422:58730488:58734191:58734222,	58730423	58730488	58730470	58730470	Frame_Shift_Del	G	-	p.T175fs
LIHC	TCGA-G3-A3CJ-01	PSMA3	ENST00000557087.1,ENST00000555931.1,ENST00000557508.1,ENST00000554812.1,ENST00000555743.1,ENST00000216455.4,ENST00000412908.2	chr14	58727686:58727738:58730422:58730488:58734191:58734222,	58730423	58730488	58730472	58730472	Frame_Shift_Del	A	-	p.E176fs
LIHC	TCGA-G3-A3CJ-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831137	58831137	Frame_Shift_Del	A	-	p.E777fs
LIHC	TCGA-G3-A3CJ-01	TIMM9	ENST00000555930.2,ENST00000395159.2,ENST00000556007.2,ENST00000556367.2	chr14	58877562:58877656:58878624:58878689:58893771:58893832,58877562:58877656:58878624:58878689:58890725:58890813,	58878625	58878689	58878628	58878628	Frame_Shift_Del	T	-	p.K12fs
LIHC	TCGA-G3-A3CJ-01	KIAA0586	ENST00000556134.1,ENST00000538571.2,ENST00000261244.5,ENST00000423743.3,ENST00000354386.6	chr14	58956922:58956958:58958861:58958993:58965500:58965678,	58958862	58958993	58958936	58958936	Frame_Shift_Del	T	-	p.S1267fs
LIHC	TCGA-G3-A3CJ-01	PPM1A	ENST00000325658.3	chr14	60716377:60716395:60749401:60750255:60752341:60752459,60717148:60717199:60749401:60750255:60752341:60752459,	60749402	60750255	60750177	60750177	Frame_Shift_Del	T	-	p.D252fs
LIHC	TCGA-G3-A3CJ-01	SLC38A6	ENST00000451406.1,ENST00000529212.1,ENST00000525723.2,ENST00000491344.3,ENST00000267488.4,ENST00000456840.2,ENST00000354886.2,ENST00000529345.2	chr14	61512824:61512885:61517229:61517354:61518504:61518649,	61517230	61517354	61517326	61517326	Frame_Shift_Del	T	-	p.L342fs
LIHC	TCGA-G3-A3CJ-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000323441.6,ENST00000394997.1,ENST00000557538.1	chr14	62207260:62207345:62207472:62207906:62211422:62211531,	62207473	62207906	62207855	62207855	Frame_Shift_Del	A	-	p.E682fs
LIHC	TCGA-G3-A3CJ-01	HIF1A	ENST00000539097.1,ENST00000337138.4,ENST00000394997.1,ENST00000557538.1	chr14	62211430:62211531:62212408:62212535:62213651:62214190,	62212409	62212535	62212455	62212455	Frame_Shift_Del	T	-	p.L751fs
LIHC	TCGA-G3-A3CJ-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63851248:63851289:63856329:63856449:63858534:63858585,	63856330	63856449	63856338	63856338	Frame_Shift_Del	G	-	p.H356fs
LIHC	TCGA-G3-A3CJ-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556150.1,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63863303:63863434:63881857:63881950:63888710:63888812,	63881858	63881950	63881885	63881885	Frame_Shift_Del	T	-	p.K174fs
LIHC	TCGA-G3-A3CJ-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000344113.4,ENST00000554584.1,ENST00000557005.1	chr14	64469741:64470048:64473760:64473940:64476683:64476834,	64473761	64473940	64473910	64473910	Frame_Shift_Del	G	-	p.W1516fs
LIHC	TCGA-G3-A3CJ-01	ESR2	ENST00000353772.3,ENST00000554572.1,ENST00000358599.5,ENST00000555278.1,ENST00000344288.6,ENST00000554520.1,ENST00000357782.2,ENST00000542956.1,ENST00000267525.6,ENST00000341099.4,ENST00000556275.1,ENST00000557772.1,ENST00000553796.1	chr14	64735512:64735629:64746698:64746871:64749341:64749560,	64746699	64746871	64746823	64746823	Frame_Shift_Del	A	-	p.V137fs
LIHC	TCGA-G3-A3CJ-01	MTHFD1	ENST00000545908.1,ENST00000555252.1,ENST00000216605.8	chr14	64882356:64882457:64884605:64884742:64886531:64886643,	64884606	64884742	64884659	64884659	Frame_Shift_Del	G	-	p.G178fs
LIHC	TCGA-G3-A3CJ-01	MTHFD1	ENST00000545908.1,ENST00000555252.1,ENST00000216605.8	chr14	64892736:64892910:64894054:64894191:64896901:64896948,	64894055	64894191	64894101	64894101	Frame_Shift_Del	G	-	p.G392fs
LIHC	TCGA-G3-A3CJ-01	PPP1R36	ENST00000557202.1,ENST00000298705.1,ENST00000467261.1	chr14	65032074:65032172:65032343:65032410:65035066:65035165,	65032344	65032410	65032351	65032351	Frame_Shift_Del	T	-	p.T125fs
LIHC	TCGA-G3-A3CJ-01	MAX	ENST00000557277.1,ENST00000394606.2	chr14	65543326:65543381:65544061:65544146:65544630:65544754,	65544062	65544146	65544144	65544144	Frame_Shift_Del	C	-	p.G8fs
LIHC	TCGA-G3-A3CJ-01	MAX	ENST00000553928.1	chr14	65543326:65543381:65544045:65544146:65544630:65544754,	65544046	65544146	65544144	65544144	Frame_Shift_Del	C	-	p.G8fs
LIHC	TCGA-G3-A3CJ-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66188492:66188739:66190864:66191041:66199948:66200099,	66190865	66191041	66190983	66190983	Frame_Shift_Del	A	-	p.K402fs
LIHC	TCGA-G3-A3CJ-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000305960.9,ENST00000556501.1,ENST00000543237.1	chr14	67525365:67525503:67555699:67555792:67567572:67567628,	67555700	67555792	67555770	67555770	Frame_Shift_Del	A	-	p.V405fs
LIHC	TCGA-G3-A3CJ-01	PLEK2	ENST00000554395.1,ENST00000216446.4	chr14	67859866:67859958:67862118:67862300:67864378:67864387,	67862119	67862300	67862222	67862222	Frame_Shift_Del	C	-	p.A96fs
LIHC	TCGA-G3-A3CJ-01	PLEKHH1	ENST00000329153.5	chr14	68028670:68028752:68028853:68029611:68035854:68035933,	68028854	68029611	68028975	68028975	Frame_Shift_Del	G	-	p.Q209fs
LIHC	TCGA-G3-A3CJ-01	PLEKHH1	ENST00000329153.5	chr14	68028670:68028752:68028853:68029611:68035854:68035933,	68028854	68029611	68029108	68029108	Frame_Shift_Del	C	-	p.P254fs
LIHC	TCGA-G3-A3CJ-01	PIGH	ENST00000561303.1	chr14	68056843:68056889:68059351:68059435:68060459:68060530,68056843:68056889:68059351:68059435:68060444:68060669,	68059352	68059435	68059423	68059423	Frame_Shift_Del	A	-	p.Y136fs
LIHC	TCGA-G3-A3CJ-01	PIGH	ENST00000560722.1	chr14	68056843:68056889:68059351:68059432:68060459:68060530,	68059352	68059432	68059423	68059423	Frame_Shift_Del	A	-	p.Y136fs
LIHC	TCGA-G3-A3CJ-01	RDH11	ENST00000428130.2,ENST00000381346.4,ENST00000553816.1	chr14	68157856:68157961:68159154:68159310:68162346:68162434,68157856:68157961:68159154:68159310:68159650:68159769,	68159155	68159310	68159174	68159174	Frame_Shift_Del	A	-	p.F110fs
LIHC	TCGA-G3-A3CJ-01	ZFYVE26	ENST00000554523.1,ENST00000557306.1,ENST00000554557.1,ENST00000554783.1,ENST00000347230.4,ENST00000394455.2	chr14	68220427:68220483:68220787:68220929:68221767:68221967,	68220788	68220929	68220829	68220829	Frame_Shift_Del	G	-	p.L2363fs
LIHC	TCGA-G3-A3CJ-01	ZFYVE26	ENST00000554523.1,ENST00000557306.1,ENST00000554557.1,ENST00000347230.4,ENST00000394455.2	chr14	68221767:68221967:68222664:68222862:68228082:68228208,	68222665	68222862	68222828	68222828	Frame_Shift_Del	A	-	p.F2208fs
LIHC	TCGA-G3-A3CJ-01	ZFYVE26	ENST00000555452.1,ENST00000554557.1,ENST00000347230.4,ENST00000394455.2	chr14	68228082:68228301:68228919:68229129:68229388:68229536,	68228920	68229129	68228999	68228999	Frame_Shift_Del	T	-	p.N2097fs
LIHC	TCGA-G3-A3CJ-01	ZFYVE26	ENST00000554523.1,ENST00000557407.1,ENST00000555452.1,ENST00000347230.4	chr14	68270817:68270981:68271933:68272022:68272170:68272335,	68271934	68272022	68272018	68272018	Frame_Shift_Del	G	-	p.P396fs
LIHC	TCGA-G3-A3CJ-01	ACTN1	ENST00000193403.6,ENST00000556083.1	chr14	69345174:69345240:69345705:69345786:69346678:69346825,69343798:69343957:69345705:69345786:69346678:69346825,	69345706	69345786	69345708	69345708	Frame_Shift_Del	G	-	p.Q787fs
LIHC	TCGA-G3-A3CJ-01	GALNT16	ENST00000553471.2,ENST00000553669.1,ENST00000448469.3,ENST00000337827.4,ENST00000555920.1	chr14	69727007:69727184:69787427:69787585:69791408:69791459,	69787428	69787585	69787502	69787502	Frame_Shift_Del	C	-	p.D84fs
LIHC	TCGA-G3-A3CJ-01	SMOC1	ENST00000381280.4	chr14	70480102:70480208:70489919:70490164:70496958:70497444,70480111:70480208:70489919:70490164:70496961:70499083,	70489920	70490164	70490087	70490087	Frame_Shift_Del	C	-	p.T405fs
LIHC	TCGA-G3-A3CJ-01	MED6	ENST00000256379.5,ENST00000554963.1,ENST00000430055.2	chr14	71052472:71052500:71057982:71058098:71059596:71059632,	71057983	71058098	71057989	71057989	Frame_Shift_Del	A	-	p.F192fs
LIHC	TCGA-G3-A3CJ-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054714	72054714	Frame_Shift_Del	A	-	p.Q42fs
LIHC	TCGA-G3-A3CJ-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054805	72054805	Frame_Shift_Del	A	-	p.P72fs
LIHC	TCGA-G3-A3CJ-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72152078:72152348:72165697:72165844:72169097:72169222,	72165698	72165844	72165754	72165754	Frame_Shift_Del	C	-	p.S1144fs
LIHC	TCGA-G3-A3CJ-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72152078:72152348:72165697:72165844:72169097:72169222,	72165698	72165844	72165837	72165837	Frame_Shift_Del	C	-	p.P1172fs
LIHC	TCGA-G3-A3CJ-01	PAPLN	ENST00000555445.1	chr14	73727863:73728002:73729105:73729535:73730352:73730490,	73729106	73729535	73729165	73729165	Frame_Shift_Del	G	-	p.G786fs
LIHC	TCGA-G3-A3CJ-01	PAPLN	ENST00000340738.5,ENST00000555123.1,ENST00000554301.1,ENST00000427855.1,ENST00000381166.3	chr14	73727873:73728002:73729057:73729535:73730352:73730490,	73729058	73729535	73729165	73729165	Frame_Shift_Del	G	-	p.G786fs
LIHC	TCGA-G3-A3CJ-01	PAPLN	ENST00000340738.5,ENST00000216658.5,ENST00000555445.1,ENST00000554301.1,ENST00000555700.1,ENST00000427855.1,ENST00000557061.1	chr14	73733208:73733336:73733430:73733539:73735264:73735431,	73733431	73733539	73733454	73733454	Frame_Shift_Del	C	-	p.P1140fs
LIHC	TCGA-G3-A3CJ-01	ELMSAN1	ENST00000451078.1,ENST00000476562.1,ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74186085:74186204:74187999:74188212:74189400:74189550,	74188000	74188212	74188144	74188144	Frame_Shift_Del	G	-	p.P931fs
LIHC	TCGA-G3-A3CJ-01	ELMSAN1	ENST00000451078.1,ENST00000476562.1,ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74186085:74186204:74187999:74188212:74189400:74189550,	74188000	74188212	74188166	74188166	Frame_Shift_Del	G	-	p.P924fs
LIHC	TCGA-G3-A3CJ-01	ELMSAN1	ENST00000451078.1,ENST00000476562.1,ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74189400:74189550:74191974:74192063:74192735:74192811,	74191975	74192063	74192020	74192020	Frame_Shift_Del	T	-	p.K843fs
LIHC	TCGA-G3-A3CJ-01	ZNF410	ENST00000334521.4,ENST00000555730.1,ENST00000324593.6,ENST00000412490.3,ENST00000541357.2,ENST00000398139.3,ENST00000557363.1,ENST00000555044.1,ENST00000556797.1	chr14	74360499:74360635:74363018:74363237:74364773:74364965,	74363019	74363237	74363135	74363135	Frame_Shift_Del	A	-	p.K96fs
LIHC	TCGA-G3-A3CJ-01	ZNF410	ENST00000554582.1,ENST00000556396.1,ENST00000555602.2	chr14	74360499:74360635:74363050:74363237:74364773:74364965,	74363051	74363237	74363135	74363135	Frame_Shift_Del	A	-	p.K96fs
LIHC	TCGA-G3-A3CJ-01	FAM161B	ENST00000534936.1,ENST00000286544.3	chr14	74409071:74409418:74411037:74411588:74412988:74413308,	74411038	74411588	74411084	74411084	Frame_Shift_Del	C	-	p.R356fs
LIHC	TCGA-G3-A3CJ-01	COQ6	ENST00000556588.1,ENST00000334571.2,ENST00000554341.2,ENST00000556299.1,ENST00000394026.4,ENST00000238709.4	chr14	74427875:74428078:74428157:74428273:74428439:74428606,	74428158	74428273	74428213	74428213	Frame_Shift_Del	G	-	p.G384fs
LIHC	TCGA-G3-A3CJ-01	ALDH6A1	ENST00000554501.1	chr14	74535562:74535684:74537897:74538363:74538598:74538677,	74537898	74538363	74538067	74538067	Frame_Shift_Del	A	-	p.F187fs
LIHC	TCGA-G3-A3CJ-01	ALDH6A1	ENST00000350259.4,ENST00000553458.1	chr14	74535562:74535684:74537897:74538200:74538598:74538677,	74537898	74538200	74538067	74538067	Frame_Shift_Del	A	-	p.F187fs
LIHC	TCGA-G3-A3CJ-01	NPC2	ENST00000556009.1,ENST00000238633.2,ENST00000555619.1,ENST00000434013.2,ENST00000557510.1,ENST00000553490.1	chr14	74947413:74947482:74951117:74951290:74953031:74953139,	74951118	74951290	74951132	74951132	Frame_Shift_Del	T	-	p.S117fs
LIHC	TCGA-G3-A3CJ-01	LTBP2	ENST00000556206.1	chr14	74973408:74973526:74973881:74974013:74974675:74974798,74973408:74973526:74973881:74974013:74975306:74975432,	74973882	74974013	74973899	74973899	Frame_Shift_Del	G	-	p.P1297fs
LIHC	TCGA-G3-A3CJ-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74976793:74976916:74977947:74978067:74983524:74983644,	74977948	74978067	74977958	74977958	Frame_Shift_Del	C	-	p.G1006fs
LIHC	TCGA-G3-A3CJ-01	YLPM1	ENST00000238571.3,ENST00000325680.7	chr14	75230068:75231065:75245149:75245386:75247107:75247287,	75245150	75245386	75245327	75245327	Frame_Shift_Del	C	-	p.P352fs
LIHC	TCGA-G3-A3CJ-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264650	75264650	Frame_Shift_Del	T	-	p.F884fs
LIHC	TCGA-G3-A3CJ-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75264887	75264887	Frame_Shift_Del	G	-	p.G964fs
LIHC	TCGA-G3-A3CJ-01	DLST	ENST00000555459.1	chr14	75355797:75355850:75355977:75356052:75356599:75356655,75352288:75352337:75355977:75356052:75356599:75356655,	75355978	75356052	75355998	75355998	Frame_Shift_Del	A	-	p.K74fs
LIHC	TCGA-G3-A3CJ-01	DLST	ENST00000555459.1	chr14	75355797:75355850:75355977:75356052:75356599:75356655,75352288:75352337:75355977:75356052:75356599:75356655,	75355978	75356052	75356010	75356010	Frame_Shift_Del	T	-	p.F78fs
LIHC	TCGA-G3-A3CJ-01	RPS6KL1	ENST00000555834.1	chr14	75375552:75375635:75375803:75376851:75377950:75377979,	75375804	75376851	75376621	75376621	Frame_Shift_Del	G	-	p.Q299fs
LIHC	TCGA-G3-A3CJ-01	RPS6KL1	ENST00000358328.4,ENST00000354625.2,ENST00000557413.1,ENST00000555009.1,ENST00000555647.1	chr14	75375803:75375893:75376245:75376851:75377950:75377979,	75376246	75376851	75376621	75376621	Frame_Shift_Del	G	-	p.Q299fs
LIHC	TCGA-G3-A3CJ-01	MLH3	ENST00000553713.1,ENST00000555499.1,ENST00000556740.1,ENST00000355774.2,ENST00000544985.1,ENST00000555144.1,ENST00000380968.2	chr14	75497260:75497405:75498770:75498882:75505042:75505115,75497260:75497405:75498770:75498882:75506613:75506718,75497260:75497405:75498770:75498882:75500121:75500193,	75498771	75498882	75498784	75498784	Frame_Shift_Del	T	-	p.R1273fs
LIHC	TCGA-G3-A3CJ-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75513802	75513802	Frame_Shift_Del	G	-	p.L853fs
LIHC	TCGA-G3-A3CJ-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514571	75514571	Frame_Shift_Del	A	-	p.F596fs
LIHC	TCGA-G3-A3CJ-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515604	75515604	Frame_Shift_Del	A	-	p.L252fs
LIHC	TCGA-G3-A3CJ-01	TMED10	ENST00000303575.4	chr14	75602462:75602589:75614366:75614440:75618734:75618846,	75614367	75614440	75614398	75614398	Frame_Shift_Del	T	-	p.K127fs
LIHC	TCGA-G3-A3CJ-01	FLVCR2	ENST00000539311.1,ENST00000238667.4,ENST00000553587.1	chr14	76091038:76091095:76099971:76100039:76101252:76101356,	76099972	76100039	76100008	76100008	Frame_Shift_Del	T	-	p.L331fs
LIHC	TCGA-G3-A3CJ-01	TTLL5	ENST00000298832.9,ENST00000554148.1,ENST00000557636.1,ENST00000554935.1	chr14	76186121:76186169:76186938:76187046:76198680:76198762,	76186939	76187046	76187042	76187042	Frame_Shift_Del	T	-	p.C346fs
LIHC	TCGA-G3-A3CJ-01	TTLL5	ENST00000555422.1,ENST00000298832.9	chr14	76203908:76203950:76211437:76211551:76211832:76211924,76201537:76201632:76211437:76211551:76211832:76211924,	76211438	76211551	76211545	76211545	Frame_Shift_Del	G	-	p.M463fs
LIHC	TCGA-G3-A3CJ-01	TMEM63C	ENST00000298351.4	chr14	77706817:77706951:77708689:77708812:77709245:77709399,	77708690	77708812	77708788	77708788	Frame_Shift_Del	C	-	p.A388fs
LIHC	TCGA-G3-A3CJ-01	POMT2	ENST00000556326.1	chr14	77771115:77771143:77772679:77772784:77786776:77787047,	77772680	77772784	77772718	77772718	Frame_Shift_Del	C	-	p.D134fs
LIHC	TCGA-G3-A3CJ-01	SNW1	ENST00000261531.7,ENST00000556428.1,ENST00000554775.1	chr14	78184133:78184629:78184709:78184873:78187053:78187171,	78184710	78184873	78184719	78184719	Frame_Shift_Del	T	-	p.K468fs
LIHC	TCGA-G3-A3CJ-01	ADCK1	ENST00000556560.1,ENST00000555217.1,ENST00000341211.5,ENST00000238561.5	chr14	78390799:78390949:78392106:78392304:78397860:78398054,	78392107	78392304	78392202	78392202	Frame_Shift_Del	G	-	p.L368fs
LIHC	TCGA-G3-A3CJ-01	DIO2	ENST00000555844.1	chr14	80669161:80669631:80672573:80672681:80677593:80677657,80671944:80672078:80672573:80672681:80677593:80677657,	80672574	80672681	80672638	80672638	Frame_Shift_Del	A	-	p.L89fs
LIHC	TCGA-G3-A3CJ-01	SEL1L	ENST00000336735.4,ENST00000554744.1,ENST00000555824.1	chr14	81969064:81969227:81970544:81970650:81972417:81972499,	81970545	81970650	81970549	81970549	Frame_Shift_Del	T	-	p.R204fs
LIHC	TCGA-G3-A3CJ-01	PTPN21	ENST00000556564.1,ENST00000536337.1,ENST00000328736.3	chr14	88935842:88936077:88936265:88936394:88938587:88938809,	88936266	88936394	88936322	88936322	Frame_Shift_Del	A	-	p.W982fs
LIHC	TCGA-G3-A3CJ-01	ZC3H14	ENST00000557607.1,ENST00000302216.8	chr14	89042183:89042284:89044328:89044484:89068267:89068353,89042183:89042284:89044328:89044484:89063077:89063152,89042183:89042284:89044328:89044484:89073586:89073707,	89044329	89044484	89044473	89044473	Frame_Shift_Del	A	-	p.E423fs
LIHC	TCGA-G3-A3CJ-01	ZC3H14	ENST00000556110.1	chr14	89042183:89042284:89044336:89044484:89068267:89068353,	89044337	89044484	89044473	89044473	Frame_Shift_Del	A	-	p.E423fs
LIHC	TCGA-G3-A3CJ-01	ZC3H14	ENST00000556000.1,ENST00000554020.1,ENST00000251038.5,ENST00000555900.1,ENST00000393514.5	chr14	89068378:89068427:89069171:89069404:89073586:89073707,	89069172	89069404	89069209	89069209	Frame_Shift_Del	T	-	p.F518fs
LIHC	TCGA-G3-A3CJ-01	ZC3H14	ENST00000555755.1	chr14	89068378:89068427:89069171:89069389:89073586:89073707,	89069172	89069389	89069209	89069209	Frame_Shift_Del	T	-	p.F518fs
LIHC	TCGA-G3-A3CJ-01	EML5	ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89084993:89085156:89087097:89087270:89087456:89087645,	89087098	89087270	89087164	89087164	Frame_Shift_Del	A	-	p.L1771fs
LIHC	TCGA-G3-A3CJ-01	EML5	ENST00000380664.5,ENST00000554922.1	chr14	89153559:89153671:89154614:89154817:89160650:89160751,	89154615	89154817	89154774	89154774	Frame_Shift_Del	C	-	p.G861fs
LIHC	TCGA-G3-A3CJ-01	TTC8	ENST00000554686.1,ENST00000345383.5,ENST00000380656.2,ENST00000346301.4	chr14	89310149:89310194:89319314:89319400:89323533:89323621,	89319315	89319400	89319386	89319386	Frame_Shift_Del	A	-	p.G248fs
LIHC	TCGA-G3-A3CJ-01	FOXN3	ENST00000555353.1,ENST00000557258.1	chr14	89629221:89629313:89647044:89647150:89656727:89656793,89629221:89629313:89647044:89647150:89747293:89747358,	89647045	89647150	89647104	89647104	Frame_Shift_Del	C	-	p.G286fs
LIHC	TCGA-G3-A3CJ-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878299	89878299	Frame_Shift_Del	T	-	p.K174fs
LIHC	TCGA-G3-A3CJ-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878634	89878634	Frame_Shift_Del	G	-	p.L63fs
LIHC	TCGA-G3-A3CJ-01	NRDE2	ENST00000553409.1,ENST00000556189.1,ENST00000357904.3,ENST00000354366.3	chr14	90754560:90755489:90756564:90756951:90759040:90759216,	90756565	90756951	90756755	90756755	Frame_Shift_Del	A	-	p.F680fs
LIHC	TCGA-G3-A3CJ-01	CCDC88C	ENST00000389857.6,ENST00000554872.1,ENST00000553437.1	chr14	91809942:91810001:91825985:91826055:91875002:91875102,	91825986	91826055	91826012	91826012	Frame_Shift_Del	A	-	p.L105fs
LIHC	TCGA-G3-A3CJ-01	FBLN5	ENST00000556154.1,ENST00000342058.4	chr14	92361351:92361416:92403290:92403545:92406908:92406960,	92403291	92403545	92403459	92403459	Frame_Shift_Del	G	-	p.R112fs
LIHC	TCGA-G3-A3CJ-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92440970:92441087:92441515:92441630:92442451:92442533,	92441516	92441630	92441552	92441552	Frame_Shift_Del	C	-	p.G1807fs
LIHC	TCGA-G3-A3CJ-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92469852	92469852	Frame_Shift_Del	A	-	p.S1490fs
LIHC	TCGA-G3-A3CJ-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92470465	92470465	Frame_Shift_Del	C	-	p.G1285fs
LIHC	TCGA-G3-A3CJ-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92471661	92471661	Frame_Shift_Del	T	-	p.T887fs
LIHC	TCGA-G3-A3CJ-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472698	92472698	Frame_Shift_Del	T	-	p.K541fs
LIHC	TCGA-G3-A3CJ-01	ATXN3	ENST00000556374.1,ENST00000554214.1,ENST00000556958.1,ENST00000553686.1,ENST00000557311.1,ENST00000393287.5,ENST00000556671.1,ENST00000553491.1,ENST00000553570.1,ENST00000555958.1,ENST00000340660.6,ENST00000556315.1,ENST00000553287.1,ENST00000555381.1,ENST00000359366.5,ENST00000545170.1,ENST00000515746.1,ENST00000556288.1,ENST00000553498.1,ENST00000556898.1,ENST00000556220.1,ENST00000554592.1,ENST00000556274.1,ENST00000502250.1,ENST00000553488.1,ENST00000429774.2,ENST00000554672.1,ENST00000532032.1,ENST00000554673.1,ENST00000554491.1,ENST00000506466.1,ENST00000554994.1,ENST00000554350.1,ENST00000503767.1,ENST00000553309.1	chr14	92547366:92547405:92548643:92548810:92549469:92549579,	92548644	92548810	92548701	92548701	Frame_Shift_Del	T	-	p.I240fs
LIHC	TCGA-G3-A3CJ-01	ATXN3	ENST00000556315.1,ENST00000554592.1	chr14	92562436:92562481:92563017:92563182:92572872:92572906,92560089:92560175:92563017:92563182:92572872:92572906,92562436:92562478:92563017:92563182:92572872:92572906,	92563018	92563182	92563022	92563022	Frame_Shift_Del	A	-	p.L62fs
LIHC	TCGA-G3-A3CJ-01	CPSF2	ENST00000298875.4	chr14	92597294:92597477:92600354:92600514:92600593:92600699,	92600355	92600514	92600439	92600439	Frame_Shift_Del	G	-	p.L78fs
LIHC	TCGA-G3-A3CJ-01	LGMN	ENST00000334869.4,ENST00000393218.2,ENST00000557609.1	chr14	93170620:93170706:93170984:93171052:93176016:93176086,93170632:93170706:93170984:93171052:93172827:93172998,	93170985	93171052	93171010	93171010	Frame_Shift_Del	A	-	p.C412fs
LIHC	TCGA-G3-A3CJ-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93263752:93264326:93273080:93273308:93275644:93275864,	93273081	93273308	93273113	93273113	Frame_Shift_Del	G	-	p.G193fs
LIHC	TCGA-G3-A3CJ-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93263752:93264326:93273080:93273308:93275644:93275864,	93273081	93273308	93273166	93273166	Frame_Shift_Del	C	-	p.D210fs
LIHC	TCGA-G3-A3CJ-01	GOLGA5	ENST00000163416.2	chr14	93301903:93302009:93303730:93303794:93305710:93306141,	93303731	93303794	93303745	93303745	Frame_Shift_Del	T	-	p.I689fs
LIHC	TCGA-G3-A3CJ-01	ITPK1	ENST00000556185.1,ENST00000557309.1,ENST00000267615.6,ENST00000556603.2,ENST00000555495.1,ENST00000553452.1,ENST00000354313.3,ENST00000553655.1	chr14	93429176:93429194:93460224:93460342:93483020:93483146,	93460225	93460342	93460282	93460282	Frame_Shift_Del	G	-	p.L104fs
LIHC	TCGA-G3-A3CJ-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000334746.5	chr14	93719992:93720136:93723540:93723701:93727947:93728023,	93723541	93723701	93723675	93723675	Frame_Shift_Del	G	-	p.H492fs
LIHC	TCGA-G3-A3CJ-01	BTBD7	ENST00000554565.1	chr14	93727947:93728023:93730130:93730339:93760203:93760274,93727947:93728023:93730130:93730339:93799165:93799367,	93730131	93730339	93730193	93730193	Frame_Shift_Del	C	-	p.D437fs
LIHC	TCGA-G3-A3CJ-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760606	93760606	Frame_Shift_Del	A	-	p.S255fs
LIHC	TCGA-G3-A3CJ-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760865	93760865	Frame_Shift_Del	A	-	p.F167fs
LIHC	TCGA-G3-A3CJ-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1	chr14	94097146:94097254:94100866:94100983:94103561:94103645,	94100867	94100983	94100884	94100884	Frame_Shift_Del	A	-	p.K1934fs
LIHC	TCGA-G3-A3CJ-01	UNC79	ENST00000256339.4,ENST00000393151.2,ENST00000553484.1,ENST00000555664.1	chr14	94155010:94155186:94156462:94156649:94158094:94158292,	94156463	94156649	94156547	94156547	Frame_Shift_Del	C	-	p.C2451fs
LIHC	TCGA-G3-A3CJ-01	ASB2	ENST00000555019.1,ENST00000315988.4,ENST00000553883.1	chr14	94400512:94401138:94404043:94404197:94405453:94406018,	94404044	94404197	94404150	94404150	Frame_Shift_Del	G	-	p.P555fs
LIHC	TCGA-G3-A3CJ-01	DDX24	ENST00000330836.5	chr14	94528820:94528967:94545370:94546093:94547464:94547492,	94545371	94546093	94545867	94545867	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-G3-A3CJ-01	DDX24	ENST00000555054.1	chr14	94528820:94528967:94545370:94545967:94547464:94547492,	94545371	94545967	94545867	94545867	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-G3-A3CJ-01	IFI27L1	ENST00000555341.1,ENST00000393115.3,ENST00000555523.1,ENST00000553664.1,ENST00000554166.1	chr14	94567084:94567117:94568159:94568321:94568822:94568882,	94568160	94568321	94568273	94568273	Frame_Shift_Del	G	-	p.G60fs
LIHC	TCGA-G3-A3CJ-01	IFI27L1	ENST00000554562.1,ENST00000556381.1	chr14	94567084:94567117:94568159:94568405:94568822:94568882,	94568160	94568405	94568273	94568273	Frame_Shift_Del	G	-	p.G60fs
LIHC	TCGA-G3-A3CJ-01	SERPINA10	ENST00000261994.4	chr14	94754622:94754896:94756212:94756980:94759525:94759608,	94756213	94756980	94756442	94756442	Frame_Shift_Del	C	-	p.G203fs
LIHC	TCGA-G3-A3CJ-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669213	95669213	Frame_Shift_Del	T	-	p.R825fs
LIHC	TCGA-G3-A3CJ-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670514	95670514	Frame_Shift_Del	C	-	p.G391fs
LIHC	TCGA-G3-A3CJ-01	CLMN	ENST00000298912.4	chr14	95677022:95677216:95679555:95679746:95681977:95682070,	95679556	95679746	95679679	95679679	Frame_Shift_Del	C	-	p.G162fs
LIHC	TCGA-G3-A3CJ-01	ATG2B	ENST00000359933.4	chr14	96798641:96798747:96798837:96798992:96800024:96800210,	96798838	96798992	96798914	96798914	Frame_Shift_Del	G	-	p.P429fs
LIHC	TCGA-G3-A3CJ-01	PAPOLA	ENST00000555224.1,ENST00000557406.1	chr14	96987399:96987409:96991646:96991728:96993766:96993833,96987399:96987409:96991646:96991728:96994289:96994339,	96991647	96991728	96991687	96991687	Frame_Shift_Del	T	-	p.I97fs
LIHC	TCGA-G3-A3CJ-01	PAPOLA	ENST00000392990.2,ENST00000555224.1,ENST00000555626.1,ENST00000216277.8,ENST00000557320.1,ENST00000553689.1,ENST00000553461.1	chr14	96997811:96997923:96998667:96998757:96998847:96998986,	96998668	96998757	96998722	96998722	Frame_Shift_Del	G	-	p.R221fs
LIHC	TCGA-G3-A3CJ-01	PAPOLA	ENST00000556787.1,ENST00000392990.2,ENST00000556283.1,ENST00000555626.1,ENST00000216277.8,ENST00000553689.1	chr14	97010485:97010595:97014133:97014255:97018816:97018880,	97014134	97014255	97014198	97014198	Frame_Shift_Del	A	-	p.V488fs
LIHC	TCGA-G3-A3CJ-01	SETD3	ENST00000331768.5,ENST00000446066.1	chr14	99865068:99865462:99866435:99866596:99870561:99870647,	99866436	99866596	99866456	99866456	Frame_Shift_Del	T	-	p.T440fs
LIHC	TCGA-G3-A3CJ-01	CYP46A1	ENST00000380228.2,ENST00000261835.3,ENST00000554176.1,ENST00000423126.2	chr14	100172983:100173122:100173904:100174015:100182146:100182297,	100173905	100174015	100173942	100173942	Frame_Shift_Del	C	-	p.A54fs
LIHC	TCGA-G3-A3CJ-01	YY1	ENST00000554804.1	chr14	100728640:100728803:100741034:100741095:100742826:100742915,100728640:100728803:100741034:100741095:100743754:100744130,	100741035	100741095	100741086	100741086	Frame_Shift_Del	C	-	p.C298fs
LIHC	TCGA-G3-A3CJ-01	SLC25A47	ENST00000557052.1,ENST00000361529.3	chr14	100793524:100793707:100795062:100795381:100795701:100796473,	100795063	100795381	100795089	100795089	Frame_Shift_Del	G	-	p.V118fs
LIHC	TCGA-G3-A3CJ-01	SLC25A47	ENST00000557052.1,ENST00000361529.3	chr14	100793524:100793707:100795062:100795381:100795701:100796473,	100795063	100795381	100795161	100795161	Frame_Shift_Del	G	-	p.L142fs
LIHC	TCGA-G3-A3CJ-01	HSP90AA1	ENST00000216281.8,ENST00000334701.7	chr14	102551688:102551768:102552094:102552461:102552553:102552668,	102552095	102552461	102552121	102552121	Frame_Shift_Del	C	-	p.G290fs
LIHC	TCGA-G3-A3CJ-01	WDR20	ENST00000556094.1	chr14	102606317:102606509:102661274:102661457:102674939:102675020,102606251:102606324:102661274:102661457:102689166:102689695,	102661275	102661457	102661314	102661314	Frame_Shift_Del	A	-	p.K97fs
LIHC	TCGA-G3-A3CJ-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675294	102675294	Frame_Shift_Del	G	-	p.G264fs
LIHC	TCGA-G3-A3CJ-01	TECPR2	ENST00000558678.1,ENST00000561228.1	chr14	102829415:102829453:102842986:102843277:102873674:102873803,	102842987	102843277	102843191	102843191	Frame_Shift_Del	G	-	p.G45fs
LIHC	TCGA-G3-A3CJ-01	TECPR2	ENST00000558678.1,ENST00000359520.7	chr14	102916896:102916986:102918730:102918964:102931477:102931626,	102918731	102918964	102918921	102918921	Frame_Shift_Del	C	-	p.C1199fs
LIHC	TCGA-G3-A3CJ-01	TECPR2	ENST00000359520.7	chr14	102918730:102918964:102931477:102931626:102963315:102963457,	102931478	102931626	102931500	102931500	Frame_Shift_Del	G	-	p.L1221fs
LIHC	TCGA-G3-A3CJ-01	TECPR2	ENST00000359520.7	chr14	102931477:102931626:102963315:102963457:102963906:102964056,	102963316	102963457	102963322	102963322	Frame_Shift_Del	G	-	p.G1266fs
LIHC	TCGA-G3-A3CJ-01	RCOR1	ENST00000560472.1	chr14	103187656:103187714:103188523:103188753:103192804:103192898,103187358:103187421:103188523:103188753:103192804:103192922,	103188524	103188753	103188601	103188601	Frame_Shift_Del	T	-	p.F424fs
LIHC	TCGA-G3-A3CJ-01	TRAF3	ENST00000560371.1,ENST00000558700.1,ENST00000392745.2	chr14	103352525:103352606:103355896:103355971:103357661:103357754,	103355897	103355971	103355928	103355928	Frame_Shift_Del	C	-	p.A228fs
LIHC	TCGA-G3-A3CJ-01	CDC42BPB	ENST00000361246.2	chr14	103406563:103406661:103410227:103410824:103411998:103412061,	103410228	103410824	103410432	103410432	Frame_Shift_Del	C	-	p.D1402fs
LIHC	TCGA-G3-A3CJ-01	CDC42BPB	ENST00000559043.1,ENST00000361246.2	chr14	103420938:103421025:103425967:103426047:103429397:103429492,	103425968	103426047	103426019	103426019	Frame_Shift_Del	G	-	p.S950fs
LIHC	TCGA-G3-A3CJ-01	EIF5	ENST00000558265.1,ENST00000558316.1,ENST00000216554.3,ENST00000558551.1,ENST00000558506.1,ENST00000560338.1,ENST00000559532.1,ENST00000392715.2,ENST00000561325.1,ENST00000559130.1	chr14	103802132:103802269:103802372:103802454:103803013:103803065,	103802373	103802454	103802378	103802378	Frame_Shift_Del	G	-	p.E26fs
LIHC	TCGA-G3-A3CJ-01	EIF5	ENST00000558265.1,ENST00000216554.3,ENST00000558506.1,ENST00000561439.1,ENST00000392715.2	chr14	103803100:103803186:103803452:103803564:103804663:103804685,	103803453	103803564	103803552	103803552	Frame_Shift_Del	A	-	p.K143fs
LIHC	TCGA-G3-A3CJ-01	EIF5	ENST00000216554.3,ENST00000558506.1,ENST00000392715.2	chr14	103805508:103805670:103805975:103806140:103806763:103806898,	103805976	103806140	103805991	103805991	Frame_Shift_Del	A	-	p.K309fs
LIHC	TCGA-G3-A3CJ-01	MARK3	ENST00000560603.1	chr14	103851753:103852034:103852377:103852417:103871412:103871604,	103852378	103852417	103852390	103852390	Frame_Shift_Del	A	-	p.P8fs
LIHC	TCGA-G3-A3CJ-01	MARK3	ENST00000303622.9,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000558223.1,ENST00000560603.1,ENST00000429436.2	chr14	103852377:103852417:103871412:103871604:103915255:103915304,103852377:103852417:103871412:103871604:103894723:103894777,	103871413	103871604	103871559	103871559	Frame_Shift_Del	T	-	p.N66fs
LIHC	TCGA-G3-A3CJ-01	MARK3	ENST00000554627.1,ENST00000216288.7	chr14	103933415:103933528:103934417:103934523:103941329:103941547,	103934418	103934523	103934497	103934497	Frame_Shift_Del	A	-	p.Q413fs
LIHC	TCGA-G3-A3CJ-01	MARK3	ENST00000303622.9,ENST00000335102.5,ENST00000440884.3,ENST00000553942.1,ENST00000416682.2,ENST00000429436.2	chr14	103933415:103933528:103934369:103934523:103941329:103941547,	103934370	103934523	103934497	103934497	Frame_Shift_Del	A	-	p.Q413fs
LIHC	TCGA-G3-A3CJ-01	XRCC3	ENST00000554913.1,ENST00000553807.1,ENST00000555055.1,ENST00000445556.1,ENST00000553264.1,ENST00000352127.7	chr14	104169614:104169664:104173339:104173552:104174858:104174996,	104173340	104173552	104173518	104173518	Frame_Shift_Del	G	-	p.P76fs
LIHC	TCGA-G3-A3CJ-01	TDRD9	ENST00000557332.1,ENST00000409874.4,ENST00000339063.5	chr14	104462086:104462144:104464960:104465065:104470574:104470672,	104464961	104465065	104464968	104464968	Frame_Shift_Del	T	-	p.D462fs
LIHC	TCGA-G3-A3CJ-01	TDRD9	ENST00000557332.1,ENST00000409874.4,ENST00000339063.5	chr14	104508405:104508524:104515944:104516017:104518317:104518618,	104515945	104516017	104515995	104515995	Frame_Shift_Del	A	-	p.E1342fs
LIHC	TCGA-G3-A3CJ-01	TDRD9	ENST00000557332.1,ENST00000409874.4,ENST00000339063.5	chr14	104508405:104508524:104515944:104516017:104518317:104518618,	104515945	104516017	104516000	104516000	Frame_Shift_Del	C	-	p.P1344fs
LIHC	TCGA-G3-A3CJ-01	AKT1	ENST00000544168.1,ENST00000554848.1,ENST00000402615.2,ENST00000407796.2,ENST00000554581.1,ENST00000349310.3,ENST00000555528.1	chr14	105239791:105239917:105240248:105240317:105241274:105241340,	105240249	105240317	105240253	105240253	Frame_Shift_Del	C	-	p.G233fs
LIHC	TCGA-G3-A3CJ-01	BRF1	ENST00000546417.1,ENST00000552127.1,ENST00000546474.1,ENST00000551787.1,ENST00000547562.1,ENST00000379932.4,ENST00000327359.3,ENST00000440513.3,ENST00000379937.2,ENST00000392557.4,ENST00000446501.2,ENST00000549655.1	chr14	105692459:105692498:105692587:105692627:105692970:105693097,	105692588	105692627	105692604	105692604	Frame_Shift_Del	T	-	p.K313fs
LIHC	TCGA-G3-A3CJ-01	MTA1	ENST00000331320.7,ENST00000438610.1,ENST00000406191.1,ENST00000481012.1,ENST00000405646.1,ENST00000498644.1,ENST00000424723.1	chr14	105916597:105916661:105920529:105920647:105924606:105924708,	105920530	105920647	105920607	105920607	Frame_Shift_Del	A	-	p.G170fs
LIHC	TCGA-G3-A3CJ-01	MTA1	ENST00000406191.1	chr14	105931430:105931520:105932762:105932915:105935803:105935835,	105932763	105932915	105932776	105932776	Frame_Shift_Del	C	-	p.R546fs
LIHC	TCGA-G3-A3CJ-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25584283:25584404:25585231:25585375:25599499:25599573,	25585232	25585375	25585250	25585250	Frame_Shift_Del	T	-	p.N827fs
LIHC	TCGA-G3-A3CJ-01	ATP10A	ENST00000356865.6,ENST00000555815.1	chr15	25936861:25936938:25939965:25940293:25947062:25947247,	25939966	25940293	25940097	25940097	Frame_Shift_Del	T	-	p.N986fs
LIHC	TCGA-G3-A3CJ-01	GABRB3	ENST00000541819.2,ENST00000311550.5,ENST00000299267.4	chr15	26828478:26828561:26866460:26866681:27017548:27017616,	26866461	26866681	26866509	26866509	Frame_Shift_Del	T	-	p.N194fs
LIHC	TCGA-G3-A3CJ-01	GABRA5	ENST00000355395.5	chr15	27112218:27112258:27114321:27114481:27125992:27126114,	27114322	27114481	27114432	27114432	Frame_Shift_Del	A	-	p.K13fs
LIHC	TCGA-G3-A3CJ-01	OCA2	ENST00000445578.1,ENST00000382996.2,ENST00000354638.3	chr15	28277210:28277309:28326793:28327041:28344369:28344442,	28326794	28327041	28326899	28326899	Frame_Shift_Del	C	-	p.G41fs
LIHC	TCGA-G3-A3CJ-01	HERC2	ENST00000261609.7	chr15	28375648:28375740:28377245:28377407:28377798:28377976,	28377246	28377407	28377305	28377305	Frame_Shift_Del	C	-	p.D4171fs
LIHC	TCGA-G3-A3CJ-01	HERC2	ENST00000261609.7,ENST00000564734.1	chr15	28501234:28501463:28502206:28502407:28505922:28506116,	28502207	28502407	28502311	28502311	Frame_Shift_Del	G	-	p.L806fs
LIHC	TCGA-G3-A3CJ-01	TJP1	ENST00000545208.2,ENST00000400011.2	chr15	30011096:30011342:30012561:30012912:30018582:30018683,	30012562	30012912	30012706	30012706	Frame_Shift_Del	G	-	p.A873fs
LIHC	TCGA-G3-A3CJ-01	MTMR10	ENST00000435680.1,ENST00000567567.1,ENST00000425768.1,ENST00000566338.1	chr15	31233411:31234275:31235092:31235275:31239332:31239503,	31235093	31235275	31235219	31235219	Frame_Shift_Del	G	-	p.P535fs
LIHC	TCGA-G3-A3CJ-01	MTMR10	ENST00000435680.1,ENST00000567567.1,ENST00000425768.1,ENST00000565728.1,ENST00000568604.1,ENST00000563714.1	chr15	31267133:31267206:31269021:31269158:31282979:31283040,	31269022	31269158	31269130	31269130	Frame_Shift_Del	A	-	p.F50fs
LIHC	TCGA-G3-A3CJ-01	TRPM1	ENST00000558768.1	chr15	31354781:31354905:31355338:31355495:31358278:31358450,	31355339	31355495	31355447	31355447	Frame_Shift_Del	G	-	p.P297fs
LIHC	TCGA-G3-A3CJ-01	TRPM1	ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31354781:31354905:31355320:31355495:31358278:31358450,	31355321	31355495	31355447	31355447	Frame_Shift_Del	G	-	p.P297fs
LIHC	TCGA-G3-A3CJ-01	TRPM1	ENST00000560658.1,ENST00000560801.1	chr15	31354781:31354905:31355290:31355495:31358278:31358450,	31355291	31355495	31355447	31355447	Frame_Shift_Del	G	-	p.P297fs
LIHC	TCGA-G3-A3CJ-01	CHRNA7	ENST00000454250.3,ENST00000306901.3	chr15	32393505:32393550:32403990:32404100:32446107:32446187,	32403991	32404100	32404056	32404056	Frame_Shift_Del	C	-	p.F102fs
LIHC	TCGA-G3-A3CJ-01	SCG5	ENST00000494364.1,ENST00000413748.2,ENST00000497208.1	chr15	32933902:32933979:32935786:32936019:32971966:32972116,	32935787	32936019	32935836	32935836	Frame_Shift_Del	T	-	p.F15fs
LIHC	TCGA-G3-A3CJ-01	SCG5	ENST00000494364.1,ENST00000413748.2,ENST00000497208.1	chr15	32933902:32933979:32935786:32936019:32971966:32972116,	32935787	32936019	32936003	32936003	Frame_Shift_Del	C	-	p.G70fs
LIHC	TCGA-G3-A3CJ-01	FMN1	ENST00000559047.1,ENST00000334528.9	chr15	33260914:33261678:33300214:33300276:33445248:33447115,33260914:33261678:33300214:33300276:33357157:33357275,	33300215	33300276	33300258	33300258	Frame_Shift_Del	A	-	p.L504fs
LIHC	TCGA-G3-A3CJ-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34105667:34105780:34109062:34109159:34110778:34110885,	34109063	34109159	34109126	34109126	Frame_Shift_Del	T	-	p.Y3522fs
LIHC	TCGA-G3-A3CJ-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34130760	34130760	Frame_Shift_Del	G	-	p.V4193fs
LIHC	TCGA-G3-A3CJ-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34444996	34444996	Frame_Shift_Del	A	-	p.S145fs
LIHC	TCGA-G3-A3CJ-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34445124	34445124	Frame_Shift_Del	T	-	p.N102fs
LIHC	TCGA-G3-A3CJ-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34445168	34445168	Frame_Shift_Del	T	-	p.K87fs
LIHC	TCGA-G3-A3CJ-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35189097:35189167:35189759:35189906:35192822:35193064,	35189760	35189906	35189824	35189824	Frame_Shift_Del	T	-	p.T776fs
LIHC	TCGA-G3-A3CJ-01	MEIS2	ENST00000338564.5,ENST00000219869.9,ENST00000557796.2,ENST00000607277.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000397624.3,ENST00000340545.5,ENST00000382766.2,ENST00000559561.1,ENST00000561208.1,ENST00000424352.2	chr15	37242524:37242601:37329014:37329160:37375971:37376086,	37329015	37329160	37329049	37329049	Frame_Shift_Del	T	-	p.N289fs
LIHC	TCGA-G3-A3CJ-01	MEIS2	ENST00000338564.5,ENST00000219869.9,ENST00000557796.2,ENST00000607277.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000397624.3,ENST00000340545.5,ENST00000382766.2,ENST00000559561.1,ENST00000561208.1,ENST00000424352.2	chr15	37242524:37242601:37329014:37329160:37375971:37376086,	37329015	37329160	37329090	37329090	Frame_Shift_Del	T	-	p.K275fs
LIHC	TCGA-G3-A3CJ-01	SPRED1	ENST00000561205.1	chr15	38545381:38545418:38591573:38591748:38614441:38614610,	38591574	38591748	38591713	38591713	Frame_Shift_Del	T	-	p.F59fs
LIHC	TCGA-G3-A3CJ-01	RASGRP1	ENST00000558432.1,ENST00000310803.5,ENST00000450598.2,ENST00000561180.1,ENST00000539159.1,ENST00000414708.2	chr15	38782754:38782889:38786582:38786968:38790994:38791147,	38786583	38786968	38786632	38786632	Frame_Shift_Del	T	-	p.K737fs
LIHC	TCGA-G3-A3CJ-01	FSIP1	ENST00000350221.3	chr15	40030291:40030402:40031865:40031990:40034005:40034101,	40031866	40031990	40031950	40031950	Frame_Shift_Del	T	-	p.K232fs
LIHC	TCGA-G3-A3CJ-01	KNSTRN	ENST00000608100.1,ENST00000560220.1,ENST00000560981.1,ENST00000448395.2,ENST00000416151.2,ENST00000249776.8	chr15	40678605:40678695:40679359:40679407:40681706:40681812,	40679360	40679407	40679402	40679402	Frame_Shift_Del	A	-	p.R160fs
LIHC	TCGA-G3-A3CJ-01	KNSTRN	ENST00000560321.1	chr15	40678605:40678695:40679359:40679419:40681706:40681812,	40679360	40679419	40679402	40679402	Frame_Shift_Del	A	-	p.R160fs
LIHC	TCGA-G3-A3CJ-01	RMDN3	ENST00000338376.3,ENST00000560905.1,ENST00000558777.1	chr15	41043623:41043767:41044183:41044376:41046794:41046828,	41044184	41044376	41044203	41044203	Frame_Shift_Del	C	-	p.E121fs
LIHC	TCGA-G3-A3CJ-01	SPINT1	ENST00000344051.4	chr15	41145746:41145825:41145908:41146127:41146257:41146284,	41145909	41146127	41146103	41146103	Frame_Shift_Del	G	-	p.G313fs
LIHC	TCGA-G3-A3CJ-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41193075	41193075	Frame_Shift_Del	G	-	p.G687fs
LIHC	TCGA-G3-A3CJ-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41366567:41366763:41371898:41372102:41373217:41373271,	41371899	41372102	41372021	41372021	Frame_Shift_Del	G	-	p.R338fs
LIHC	TCGA-G3-A3CJ-01	CHP1	ENST00000560784.1,ENST00000392151.2,ENST00000334660.5,ENST00000560397.1	chr15	41523501:41523647:41535864:41535937:41549107:41549188,	41535865	41535937	41535887	41535887	Frame_Shift_Del	C	-	p.R30fs
LIHC	TCGA-G3-A3CJ-01	NUSAP1	ENST00000560318.1	chr15	41657628:41657787:41663724:41663882:41669393:41669470,41657628:41657787:41663724:41663882:41667909:41667949,41658013:41658061:41663724:41663882:41667909:41667949,	41663725	41663882	41663810	41663810	Frame_Shift_Del	G	-	p.G298fs
LIHC	TCGA-G3-A3CJ-01	RPAP1	ENST00000304330.4	chr15	41810203:41810380:41812588:41813345:41813935:41813989,	41812589	41813345	41813328	41813328	Frame_Shift_Del	C	-	p.G1019fs
LIHC	TCGA-G3-A3CJ-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41822061:41822177:41823220:41823400:41825543:41825592,41822061:41822177:41823220:41823400:41826911:41827133,	41823221	41823400	41823267	41823267	Frame_Shift_Del	A	-	p.F299fs
LIHC	TCGA-G3-A3CJ-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961117	41961117	Frame_Shift_Del	T	-	p.L9fs
LIHC	TCGA-G3-A3CJ-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961559	41961559	Frame_Shift_Del	T	-	p.V156fs
LIHC	TCGA-G3-A3CJ-01	PLA2G4D	ENST00000290472.3	chr15	42359880:42361139:42362106:42362293:42362914:42363081,	42362107	42362293	42362255	42362255	Frame_Shift_Del	C	-	p.G694fs
LIHC	TCGA-G3-A3CJ-01	CAPN3	ENST00000349748.3,ENST00000397163.3,ENST00000318023.7,ENST00000357568.3,ENST00000356316.3	chr15	42676680:42676750:42678364:42678483:42679950:42680084,	42678365	42678483	42678433	42678433	Frame_Shift_Del	C	-	p.P150fs
LIHC	TCGA-G3-A3CJ-01	CAPN3	ENST00000318023.7,ENST00000357568.3,ENST00000356316.3	chr15	42694996:42695200:42695938:42695975:42701500:42701578,42694996:42695200:42695938:42695975:42700408:42700522,	42695939	42695975	42695947	42695947	Frame_Shift_Del	A	-	p.E585fs
LIHC	TCGA-G3-A3CJ-01	ZNF106	ENST00000565611.1	chr15	42738823:42738856:42740269:42740903:42758250:42758312,42738823:42738856:42740269:42740903:42749414:42749711,	42740270	42740903	42740584	42740584	Frame_Shift_Del	C	-	p.A919fs
LIHC	TCGA-G3-A3CJ-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742679	42742679	Frame_Shift_Del	T	-	p.K574fs
LIHC	TCGA-G3-A3CJ-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42742969	42742969	Frame_Shift_Del	T	-	p.T478fs
LIHC	TCGA-G3-A3CJ-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42743367	42743367	Frame_Shift_Del	T	-	p.K345fs
LIHC	TCGA-G3-A3CJ-01	ZNF106	ENST00000565948.1	chr15	42740269:42740903:42741968:42744152:42749414:42749711,	42741969	42744152	42743993	42743993	Frame_Shift_Del	T	-	p.K136fs
LIHC	TCGA-G3-A3CJ-01	CDAN1	ENST00000356231.3	chr15	43023408:43023529:43023817:43024023:43024530:43024606,	43023818	43024023	43023886	43023886	Frame_Shift_Del	C	-	p.G557fs
LIHC	TCGA-G3-A3CJ-01	TTBK2	ENST00000267890.6,ENST00000567274.1,ENST00000562880.1,ENST00000567840.1	chr15	43132557:43132631:43164808:43164956:43170746:43170882,	43164809	43164956	43164846	43164846	Frame_Shift_Del	A	-	p.V60fs
LIHC	TCGA-G3-A3CJ-01	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43307885:43308067:43309292:43309379:43313472:43313573,	43309293	43309379	43309300	43309300	Frame_Shift_Del	T	-	p.N1007fs
LIHC	TCGA-G3-A3CJ-01	TMEM62	ENST00000563859.1,ENST00000260403.2,ENST00000569369.1	chr15	43461790:43461875:43470804:43470909:43473378:43473497,	43470805	43470909	43470855	43470855	Frame_Shift_Del	A	-	p.K478fs
LIHC	TCGA-G3-A3CJ-01	TGM5	ENST00000396996.3,ENST00000220420.5,ENST00000349114.4	chr15	43525751:43525885:43526966:43527127:43527666:43528035,	43526967	43527127	43527114	43527114	Frame_Shift_Del	G	-	p.P576fs
LIHC	TCGA-G3-A3CJ-01	TGM7	ENST00000452443.2	chr15	43571822:43572149:43574041:43574284:43574714:43574818,	43574042	43574284	43574064	43574064	Frame_Shift_Del	G	-	p.T443fs
LIHC	TCGA-G3-A3CJ-01	ZSCAN29	ENST00000566849.1	chr15	43653270:43654139:43656112:43656685:43658307:43658972,	43656113	43656685	43656160	43656160	Frame_Shift_Del	G	-	p.P548fs
LIHC	TCGA-G3-A3CJ-01	ZSCAN29	ENST00000396976.2	chr15	43653270:43654139:43656112:43656580:43658307:43658972,	43656113	43656580	43656160	43656160	Frame_Shift_Del	G	-	p.P548fs
LIHC	TCGA-G3-A3CJ-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44055274:44055404:44057647:44057764:44058084:44058210,	44057648	44057764	44057742	44057742	Frame_Shift_Del	A	-	p.K234fs
LIHC	TCGA-G3-A3CJ-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44060720:44060795:44061715:44061844:44062447:44062527,	44061716	44061844	44061733	44061733	Frame_Shift_Del	T	-	p.N385fs
LIHC	TCGA-G3-A3CJ-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44060720:44060795:44061715:44061844:44062447:44062527,	44061716	44061844	44061802	44061802	Frame_Shift_Del	C	-	p.H408fs
LIHC	TCGA-G3-A3CJ-01	CASC4	ENST00000299957.6,ENST00000345795.2,ENST00000559222.1,ENST00000559037.1	chr15	44620897:44620985:44624185:44624276:44629960:44630079,	44624186	44624276	44624241	44624241	Frame_Shift_Del	A	-	p.K182fs
LIHC	TCGA-G3-A3CJ-01	CASC4	ENST00000360824.3,ENST00000345795.2,ENST00000558847.1	chr15	44671887:44671986:44673003:44673174:44705533:44705634,	44673004	44673174	44673064	44673064	Frame_Shift_Del	T	-	p.L321fs
LIHC	TCGA-G3-A3CJ-01	CTDSPL2	ENST00000396780.1	chr15	44719839:44719970:44751188:44751398:44776421:44776512,	44751189	44751398	44751328	44751328	Frame_Shift_Del	A	-	p.E39fs
LIHC	TCGA-G3-A3CJ-01	SPG11	ENST00000535302.2	chr15	44859621:44859790:44864880:44865018:44865744:44865881,44862750:44862856:44864880:44865018:44865744:44865881,44862750:44862856:44864880:44865018:44876011:44876133,	44864881	44865018	44864925	44864925	Frame_Shift_Del	A	-	p.L2101fs
LIHC	TCGA-G3-A3CJ-01	SPG11	ENST00000559822.1	chr15	44867099:44867239:44876011:44876133:44876362:44876612,	44876012	44876133	44876117	44876117	Frame_Shift_Del	C	-	p.E1921fs
LIHC	TCGA-G3-A3CJ-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000559193.1,ENST00000261866.7	chr15	44921430:44921586:44925702:44925835:44941063:44941209,	44925703	44925835	44925792	44925792	Frame_Shift_Del	A	-	p.L549fs
LIHC	TCGA-G3-A3CJ-01	PATL2	ENST00000560780.1,ENST00000434130.1,ENST00000560775.1	chr15	44958589:44958739:44959303:44959401:44960539:44960680,	44959304	44959401	44959362	44959362	Frame_Shift_Del	C	-	p.E469fs
LIHC	TCGA-G3-A3CJ-01	DUOX2	ENST00000603300.1,ENST00000389039.6	chr15	45400244:45400420:45400986:45401150:45401721:45401824,	45400987	45401150	45401074	45401074	Frame_Shift_Del	C	-	p.G437fs
LIHC	TCGA-G3-A3CJ-01	DUOX2	ENST00000389039.6	chr15	45404751:45404916:45405184:45405274:45405539:45405623,	45405185	45405274	45405249	45405249	Frame_Shift_Del	G	-	p.P32fs
LIHC	TCGA-G3-A3CJ-01	DUOX1	ENST00000321429.4,ENST00000389037.3	chr15	45431015:45431442:45431624:45431797:45433092:45433268,45431263:45431366:45431624:45431797:45433092:45433268,	45431625	45431797	45431648	45431648	Frame_Shift_Del	T	-	p.F414fs
LIHC	TCGA-G3-A3CJ-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000559716.2,ENST00000561220.2	chr15	45446148:45446198:45447999:45448127:45453034:45453188,	45448000	45448127	45448012	45448012	Frame_Shift_Del	T	-	p.V1197fs
LIHC	TCGA-G3-A3CJ-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000559716.2,ENST00000561220.2	chr15	45446148:45446198:45447999:45448127:45453034:45453188,	45448000	45448127	45448054	45448054	Frame_Shift_Del	C	-	p.S1210fs
LIHC	TCGA-G3-A3CJ-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000559716.2,ENST00000561220.2	chr15	45446148:45446198:45447999:45448127:45453034:45453188,	45448000	45448127	45448081	45448081	Frame_Shift_Del	G	-	p.R1219fs
LIHC	TCGA-G3-A3CJ-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000389037.3,ENST00000561220.2	chr15	45453935:45454168:45454416:45454575:45455729:45455885,	45454417	45454575	45454496	45454496	Frame_Shift_Del	T	-	p.I1390fs
LIHC	TCGA-G3-A3CJ-01	SHF	ENST00000558294.1	chr15	45460031:45460331:45464080:45464276:45467416:45467467,	45464081	45464276	45464175	45464175	Frame_Shift_Del	T	-	p.T331fs
LIHC	TCGA-G3-A3CJ-01	SHF	ENST00000560471.1	chr15	45464127:45464200:45464346:45464516:45467416:45467467,45464127:45464200:45464346:45464516:45465773:45465856,	45464347	45464516	45464382	45464382	Frame_Shift_Del	C	-	p.E310fs
LIHC	TCGA-G3-A3CJ-01	SHF	ENST00000561239.2,ENST00000290894.8	chr15	45464127:45464200:45464344:45464516:45467416:45467467,45464127:45464200:45464344:45464516:45465773:45465856,	45464345	45464516	45464382	45464382	Frame_Shift_Del	C	-	p.E310fs
LIHC	TCGA-G3-A3CJ-01	SHF	ENST00000560471.1	chr15	45464127:45464200:45464346:45464516:45467416:45467467,45464127:45464200:45464346:45464516:45465773:45465856,	45464347	45464516	45464448	45464448	Frame_Shift_Del	G	-	p.R288fs
LIHC	TCGA-G3-A3CJ-01	SHF	ENST00000561239.2,ENST00000290894.8	chr15	45464127:45464200:45464344:45464516:45467416:45467467,45464127:45464200:45464344:45464516:45465773:45465856,	45464345	45464516	45464448	45464448	Frame_Shift_Del	G	-	p.R288fs
LIHC	TCGA-G3-A3CJ-01	SPATA5L1	ENST00000559860.1,ENST00000305560.6,ENST00000531970.1	chr15	45702570:45702728:45706768:45706978:45707784:45707977,	45706769	45706978	45706828	45706828	Frame_Shift_Del	A	-	p.P498fs
LIHC	TCGA-G3-A3CJ-01	SEMA6D	ENST00000558014.1,ENST00000537942.1,ENST00000358066.4	chr15	48058301:48058379:48058773:48058874:48062693:48062962,	48058774	48058874	48058862	48058862	Frame_Shift_Del	G	-	p.G566fs
LIHC	TCGA-G3-A3CJ-01	SEMA6D	ENST00000389428.3	chr15	48058301:48058379:48058812:48058874:48062693:48062962,	48058813	48058874	48058862	48058862	Frame_Shift_Del	G	-	p.G566fs
LIHC	TCGA-G3-A3CJ-01	SLC24A5	ENST00000341459.3,ENST00000449382.2	chr15	48428967:48429160:48431165:48431372:48433309:48433411,	48431166	48431372	48431211	48431211	Frame_Shift_Del	T	-	p.I306fs
LIHC	TCGA-G3-A3CJ-01	DUT	ENST00000558367.1,ENST00000331200.3,ENST00000559852.1,ENST00000558472.1,ENST00000558813.1,ENST00000455976.2,ENST00000559416.1	chr15	48633485:48633560:48633711:48633782:48634218:48634230,	48633712	48633782	48633714	48633714	Frame_Shift_Del	A	-	p.K213fs
LIHC	TCGA-G3-A3CJ-01	SECISBP2L	ENST00000380927.2,ENST00000261847.3,ENST00000559471.1	chr15	49320649:49320879:49325161:49325297:49327530:49327653,	49325162	49325297	49325248	49325248	Frame_Shift_Del	T	-	p.N193fs
LIHC	TCGA-G3-A3CJ-01	COPS2	ENST00000299259.6,ENST00000388901.5,ENST00000542928.1	chr15	49420898:49420957:49421673:49421756:49422915:49422970,	49421674	49421756	49421750	49421750	Frame_Shift_Del	A	-	p.L351fs
LIHC	TCGA-G3-A3CJ-01	COPS2	ENST00000388901.5,ENST00000558843.1	chr15	49429544:49429655:49431724:49431850:49436423:49436501,49429544:49429634:49431724:49431850:49436423:49436501,	49431725	49431850	49431810	49431810	Frame_Shift_Del	A	-	p.L96fs
LIHC	TCGA-G3-A3CJ-01	FAM227B	ENST00000561116.1	chr15	49869825:49869861:49880212:49880280:49903411:49903465,	49880213	49880280	49880220	49880220	Frame_Shift_Del	T	-	p.K133fs
LIHC	TCGA-G3-A3CJ-01	DTWD1	ENST00000559164.1	chr15	49913295:49913319:49917309:49917628:49924355:49924374,	49917310	49917628	49917441	49917441	Frame_Shift_Del	A	-	p.Q26fs
LIHC	TCGA-G3-A3CJ-01	ATP8B4	ENST00000558959.1,ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1,ENST00000558906.1	chr15	50273402:50273491:50279587:50279746:50288873:50288956,	50279588	50279746	50279592	50279592	Frame_Shift_Del	A	-	p.F248fs
LIHC	TCGA-G3-A3CJ-01	ATP8B4	ENST00000558959.1,ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1,ENST00000558906.1	chr15	50273402:50273491:50279587:50279746:50288873:50288956,	50279588	50279746	50279685	50279685	Frame_Shift_Del	C	-	p.W217fs
LIHC	TCGA-G3-A3CJ-01	ATP8B4	ENST00000558959.1,ENST00000559726.1,ENST00000557955.1,ENST00000284509.6,ENST00000559829.1,ENST00000558906.1	chr15	50279708:50279746:50288873:50288956:50294349:50294420,	50288874	50288956	50288908	50288908	Frame_Shift_Del	A	-	p.L185fs
LIHC	TCGA-G3-A3CJ-01	USP8	ENST00000433963.1,ENST00000561211.1,ENST00000559329.1,ENST00000560885.1,ENST00000559242.1,ENST00000396444.3,ENST00000307179.4	chr15	50741596:50741682:50751196:50751359:50754476:50754502,	50751197	50751359	50751268	50751268	Frame_Shift_Del	A	-	p.Q136fs
LIHC	TCGA-G3-A3CJ-01	USP8	ENST00000433963.1,ENST00000425032.3,ENST00000559329.1,ENST00000560527.1,ENST00000560730.1,ENST00000396444.3,ENST00000307179.4	chr15	50754476:50754519:50757243:50757388:50763829:50763932,	50757244	50757388	50757285	50757285	Frame_Shift_Del	A	-	p.K195fs
LIHC	TCGA-G3-A3CJ-01	USP8	ENST00000433963.1,ENST00000396444.3,ENST00000307179.4	chr15	50769472:50769696:50773677:50774262:50781997:50782078,50769472:50769696:50773677:50774262:50776471:50776558,	50773678	50774262	50773808	50773808	Frame_Shift_Del	T	-	p.V450fs
LIHC	TCGA-G3-A3CJ-01	USP8	ENST00000433963.1,ENST00000396444.3,ENST00000307179.4	chr15	50769472:50769696:50773677:50774262:50781997:50782078,50769472:50769696:50773677:50774262:50776471:50776558,	50773678	50774262	50774112	50774112	Frame_Shift_Del	A	-	p.V551fs
LIHC	TCGA-G3-A3CJ-01	SPPL2A	ENST00000558934.1,ENST00000261854.5,ENST00000559527.1	chr15	51028840:51028937:51031876:51032025:51039691:51039705,	51031877	51032025	51031956	51031956	Frame_Shift_Del	A	-	p.F218fs
LIHC	TCGA-G3-A3CJ-01	DMXL2	ENST00000543779.2,ENST00000561079.1,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51755575:51755693:51756871:51757073:51757762:51757848,	51756872	51757073	51757031	51757031	Frame_Shift_Del	T	-	p.N2549fs
LIHC	TCGA-G3-A3CJ-01	DMXL2	ENST00000543779.2,ENST00000560891.1	chr15	51768785:51768913:51770467:51770544:51772144:51772336,51768785:51768916:51770467:51770544:51772144:51772336,	51770468	51770544	51770522	51770522	Frame_Shift_Del	G	-	p.A2261fs
LIHC	TCGA-G3-A3CJ-01	MAPK6	ENST00000261845.5	chr15	52311434:52311573:52338026:52339212:52342189:52342334,	52338027	52339212	52338726	52338726	Frame_Shift_Del	A	-	p.L23fs
LIHC	TCGA-G3-A3CJ-01	MAPK6	ENST00000261845.5	chr15	52350829:52350994:52353495:52353697:52356098:52358462,	52353496	52353697	52353652	52353652	Frame_Shift_Del	T	-	p.I341fs
LIHC	TCGA-G3-A3CJ-01	MYO5C	ENST00000261839.7,ENST00000560809.1	chr15	52488505:52488680:52497061:52497344:52498012:52498163,	52497062	52497344	52497207	52497207	Frame_Shift_Del	A	-	p.Y1559fs
LIHC	TCGA-G3-A3CJ-01	MYO5C	ENST00000261839.7	chr15	52531929:52532076:52534244:52534410:52536552:52536715,	52534245	52534410	52534364	52534364	Frame_Shift_Del	T	-	p.I814fs
LIHC	TCGA-G3-A3CJ-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55652288	55652288	Frame_Shift_Del	T	-	p.K561fs
LIHC	TCGA-G3-A3CJ-01	CCPG1	ENST00000425574.3,ENST00000310958.6,ENST00000442196.3,ENST00000569205.1,ENST00000568372.1	chr15	55653037:55653142:55657385:55657507:55663990:55664228,	55657386	55657507	55657398	55657398	Frame_Shift_Del	A	-	p.F272fs
LIHC	TCGA-G3-A3CJ-01	NEDD4	ENST00000513957.1,ENST00000435532.3	chr15	56243573:56243612:56243708:56243787:56258670:56258744,	56243709	56243787	56243742	56243742	Frame_Shift_Del	A	-	p.V55fs
LIHC	TCGA-G3-A3CJ-01	NEDD4	ENST00000513957.1,ENST00000435532.3	chr15	56243573:56243612:56243708:56243787:56258670:56258744,	56243709	56243787	56243745	56243745	Frame_Shift_Del	T	-	p.G54fs
LIHC	TCGA-G3-A3CJ-01	RFX7	ENST00000317318.6,ENST00000422057.1,ENST00000559447.2,ENST00000423270.1	chr15	56436598:56436681:56471467:56471501:56535322:56535464,	56471468	56471501	56471497	56471497	Frame_Shift_Del	T	-	p.T56fs
LIHC	TCGA-G3-A3CJ-01	TEX9	ENST00000352903.2,ENST00000537232.1,ENST00000558083.2,ENST00000561221.2	chr15	56681515:56681598:56683440:56683616:56686362:56686445,	56683441	56683616	56683508	56683508	Frame_Shift_Del	T	-	p.F80fs
LIHC	TCGA-G3-A3CJ-01	MNS1	ENST00000260453.3	chr15	56739038:56739141:56748591:56748719:56756223:56756445,	56748592	56748719	56748595	56748595	Frame_Shift_Del	T	-	p.N117fs
LIHC	TCGA-G3-A3CJ-01	MNS1	ENST00000260453.3	chr15	56739038:56739141:56748591:56748719:56756223:56756445,	56748592	56748719	56748619	56748619	Frame_Shift_Del	T	-	p.K109fs
LIHC	TCGA-G3-A3CJ-01	TCF12	ENST00000561235.1,ENST00000438423.2,ENST00000561346.1,ENST00000560764.1,ENST00000537840.1,ENST00000559609.1,ENST00000267811.5,ENST00000543579.1,ENST00000557843.1,ENST00000343827.3,ENST00000452095.2,ENST00000333725.5	chr15	57524909:57525054:57526240:57526305:57535669:57535713,	57526241	57526305	57526288	57526288	Frame_Shift_Del	G	-	p.G340fs
LIHC	TCGA-G3-A3CJ-01	ALDH1A2	ENST00000561070.1,ENST00000347587.3,ENST00000537372.1,ENST00000249750.4,ENST00000558231.1,ENST00000430119.2,ENST00000559517.1	chr15	58287287:58287337:58302846:58302976:58306055:58306192,	58302847	58302976	58302921	58302921	Frame_Shift_Del	A	-	p.L140fs
LIHC	TCGA-G3-A3CJ-01	AQP9	ENST00000219919.4,ENST00000558772.1,ENST00000536493.1	chr15	58465266:58465404:58467116:58467235:58471326:58471544,	58467117	58467235	58467162	58467162	Frame_Shift_Del	A	-	p.E141fs
LIHC	TCGA-G3-A3CJ-01	LIPC	ENST00000356113.6,ENST00000433326.2,ENST00000299022.5	chr15	58853062:58853180:58855703:58855922:58860914:58861072,	58855704	58855922	58855796	58855796	Frame_Shift_Del	A	-	p.E421fs
LIHC	TCGA-G3-A3CJ-01	ADAM10	ENST00000558733.1,ENST00000439637.1	chr15	58974450:58974513:59009775:59009926:59041678:59041793,	59009776	59009926	59009847	59009847	Frame_Shift_Del	T	-	p.K45fs
LIHC	TCGA-G3-A3CJ-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323527	59323527	Frame_Shift_Del	T	-	p.I169fs
LIHC	TCGA-G3-A3CJ-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
LIHC	TCGA-G3-A3CJ-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
LIHC	TCGA-G3-A3CJ-01	CCNB2	ENST00000288207.2,ENST00000559301.1	chr15	59408965:59409125:59409426:59409567:59415715:59415826,	59409427	59409567	59409447	59409447	Frame_Shift_Del	T	-	p.T285fs
LIHC	TCGA-G3-A3CJ-01	FAM81A	ENST00000288228.5	chr15	59806487:59806623:59808843:59809039:59813452:59815748,	59808844	59809039	59808890	59808890	Frame_Shift_Del	C	-	p.A278fs
LIHC	TCGA-G3-A3CJ-01	BNIP2	ENST00000267859.3,ENST00000415213.2,ENST00000607373.1	chr15	59955955:59956319:59961090:59961189:59961474:59961561,	59961091	59961189	59961170	59961170	Frame_Shift_Del	T	-	p.I393fs
LIHC	TCGA-G3-A3CJ-01	BNIP2	ENST00000267859.3,ENST00000415213.2,ENST00000439052.1,ENST00000607373.1	chr15	59961090:59961189:59961474:59961561:59963381:59963513,	59961475	59961561	59961501	59961501	Frame_Shift_Del	A	-	p.L378fs
LIHC	TCGA-G3-A3CJ-01	VPS13C	ENST00000261517.5,ENST00000395898.3,ENST00000395896.4,ENST00000249837.3	chr15	62219289:62219519:62221699:62221947:62223288:62223458,	62221700	62221947	62221741	62221741	Frame_Shift_Del	A	-	p.L2082fs
LIHC	TCGA-G3-A3CJ-01	RPS27L	ENST00000439025.1,ENST00000330964.5	chr15	63447819:63447930:63448611:63448720:63449598:63449698,	63448612	63448720	63448665	63448665	Frame_Shift_Del	T	-	p.K22fs
LIHC	TCGA-G3-A3CJ-01	RAB8B	ENST00000558119.1,ENST00000321437.4,ENST00000559927.1	chr15	63551825:63551891:63554890:63554941:63555725:63555795,	63554891	63554941	63554894	63554894	Frame_Shift_Del	T	-	p.F163fs
LIHC	TCGA-G3-A3CJ-01	RAB8B	ENST00000558119.1,ENST00000321437.4,ENST00000559927.1	chr15	63551825:63551891:63554890:63554941:63555725:63555795,	63554891	63554941	63554935	63554935	Frame_Shift_Del	A	-	p.R175fs
LIHC	TCGA-G3-A3CJ-01	DAPK2	ENST00000558069.1,ENST00000558482.1,ENST00000457488.1	chr15	64275823:64275953:64332368:64332466:64338496:64338521,	64332369	64332466	64332394	64332394	Frame_Shift_Del	A	-	p.Y23fs
LIHC	TCGA-G3-A3CJ-01	SNX1	ENST00000559844.1,ENST00000261889.5,ENST00000560260.1,ENST00000561026.1,ENST00000380285.3,ENST00000560829.1	chr15	64422426:64422520:64423885:64424091:64426862:64427000,	64423886	64424091	64423933	64423933	Frame_Shift_Del	G	-	p.G355fs
LIHC	TCGA-G3-A3CJ-01	SNX1	ENST00000559844.1,ENST00000261889.5,ENST00000561026.1,ENST00000380285.3,ENST00000560829.1	chr15	64426862:64427006:64428528:64428609:64429059:64429131,	64428529	64428609	64428588	64428588	Frame_Shift_Del	A	-	p.R427fs
LIHC	TCGA-G3-A3CJ-01	TRIP4	ENST00000557834.1	chr15	64680060:64680247:64686205:64686314:64687596:64687730,	64686206	64686314	64686305	64686305	Frame_Shift_Del	A	-	p.K89fs
LIHC	TCGA-G3-A3CJ-01	TRIP4	ENST00000561265.1,ENST00000558820.1,ENST00000559833.1,ENST00000261884.3,ENST00000557834.1,ENST00000560567.1,ENST00000559565.1	chr15	64686205:64686314:64687596:64687730:64689804:64689934,	64687597	64687730	64687707	64687707	Frame_Shift_Del	A	-	p.K128fs
LIHC	TCGA-G3-A3CJ-01	TRIP4	ENST00000560567.1	chr15	64701916:64702027:64710739:64710927:64716229:64716354,	64710740	64710927	64710869	64710869	Frame_Shift_Del	G	-	p.G434fs
LIHC	TCGA-G3-A3CJ-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966890	64966890	Frame_Shift_Del	C	-	p.P613fs
LIHC	TCGA-G3-A3CJ-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967994	64967994	Frame_Shift_Del	C	-	p.P982fs
LIHC	TCGA-G3-A3CJ-01	RBPMS2	ENST00000560606.1,ENST00000300069.4	chr15	65033371:65033441:65040617:65040766:65041198:65041349,	65040618	65040766	65040685	65040685	Frame_Shift_Del	G	-	p.P167fs
LIHC	TCGA-G3-A3CJ-01	SPG21	ENST00000557795.1,ENST00000559199.1,ENST00000560564.1,ENST00000204566.2,ENST00000433215.2,ENST00000558765.1	chr15	65267003:65267085:65268812:65268893:65273201:65273363,	65268813	65268893	65268840	65268840	Frame_Shift_Del	T	-	p.K93fs
LIHC	TCGA-G3-A3CJ-01	IGDCC3	ENST00000558354.1,ENST00000327987.4	chr15	65622887:65623079:65623387:65623552:65623749:65623997,	65623388	65623552	65623433	65623433	Frame_Shift_Del	C	-	p.A506fs
LIHC	TCGA-G3-A3CJ-01	MEGF11	ENST00000490495.1,ENST00000360698.4	chr15	66208485:66208614:66208935:66209294:66210303:66210432,	66208936	66209294	66209195	66209195	Frame_Shift_Del	G	-	p.P729fs
LIHC	TCGA-G3-A3CJ-01	MEGF11	ENST00000288745.3,ENST00000395614.1,ENST00000409699.2,ENST00000395625.2,ENST00000422354.1	chr15	66208485:66208614:66209165:66209294:66210303:66210432,	66209166	66209294	66209195	66209195	Frame_Shift_Del	G	-	p.P729fs
LIHC	TCGA-G3-A3CJ-01	MAP2K1	ENST00000307102.5,ENST00000566326.1	chr15	66779565:66779630:66781552:66781614:66782055:66782101,	66781553	66781614	66781588	66781588	Frame_Shift_Del	G	-	p.L332fs
LIHC	TCGA-G3-A3CJ-01	RPL4	ENST00000566039.1,ENST00000567229.1,ENST00000561775.1,ENST00000568588.1,ENST00000307961.6	chr15	66793736:66793842:66794125:66794250:66794949:66795027,	66794126	66794250	66794166	66794166	Frame_Shift_Del	A	-	p.L171fs
LIHC	TCGA-G3-A3CJ-01	LCTL	ENST00000537670.1,ENST00000565875.1,ENST00000341509.5	chr15	66844380:66844507:66845321:66845596:66850059:66850221,	66845322	66845596	66845454	66845454	Frame_Shift_Del	G	-	p.P355fs
LIHC	TCGA-G3-A3CJ-01	LCTL	ENST00000537670.1,ENST00000341509.5	chr15	66850319:66850374:66853343:66853439:66853524:66853653,	66853344	66853439	66853425	66853425	Frame_Shift_Del	T	-	p.K208fs
LIHC	TCGA-G3-A3CJ-01	IQCH	ENST00000358767.3,ENST00000335894.4,ENST00000360277.4,ENST00000514049.1,ENST00000546225.1	chr15	67692451:67692643:67709268:67709389:67713628:67713915,	67709269	67709389	67709304	67709304	Frame_Shift_Del	G	-	p.A711fs
LIHC	TCGA-G3-A3CJ-01	MAP2K5	ENST00000340972.4,ENST00000354498.5,ENST00000558392.1,ENST00000178640.5	chr15	67985855:67985906:67995674:67995746:68040568:68040595,67985855:67985906:67995674:67995746:68020253:68020283,	67995675	67995746	67995690	67995690	Frame_Shift_Del	G	-	p.G330fs
LIHC	TCGA-G3-A3CJ-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68438999:68439038:68445927:68446033:68457068:68457142,	68445928	68446033	68446009	68446009	Frame_Shift_Del	A	-	p.N306fs
LIHC	TCGA-G3-A3CJ-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68438999:68439038:68445927:68446033:68457068:68457142,	68445928	68446033	68446029	68446029	Frame_Shift_Del	T	-	p.A312fs
LIHC	TCGA-G3-A3CJ-01	ITGA11	ENST00000315757.7,ENST00000423218.2	chr15	68606116:68606206:68607988:68608065:68609602:68609701,	68607989	68608065	68608033	68608033	Frame_Shift_Del	T	-	p.K916fs
LIHC	TCGA-G3-A3CJ-01	ANP32A	ENST00000495420.1,ENST00000560303.1	chr15	69079751:69079874:69080108:69080258:69113036:69113207,	69080109	69080258	69080240	69080240	Frame_Shift_Del	C	-	p.D25fs
LIHC	TCGA-G3-A3CJ-01	GLCE	ENST00000261858.2	chr15	69502654:69502745:69548132:69548731:69553425:69553668,	69548133	69548731	69548181	69548181	Frame_Shift_Del	T	-	p.T12fs
LIHC	TCGA-G3-A3CJ-01	GLCE	ENST00000261858.2	chr15	69502654:69502745:69548132:69548731:69553425:69553668,	69548133	69548731	69548398	69548398	Frame_Shift_Del	C	-	p.P86fs
LIHC	TCGA-G3-A3CJ-01	PAQR5	ENST00000340965.3,ENST00000395407.2	chr15	69629679:69629840:69652304:69652470:69672221:69672349,	69652305	69652470	69652465	69652465	Frame_Shift_Del	C	-	p.P16fs
LIHC	TCGA-G3-A3CJ-01	KIF23	ENST00000260363.4,ENST00000352331.4,ENST00000395392.2,ENST00000559279.1,ENST00000558346.1	chr15	69713985:69714091:69714330:69714467:69714664:69714774,	69714331	69714467	69714365	69714365	Frame_Shift_Del	A	-	p.G117fs
LIHC	TCGA-G3-A3CJ-01	KIF23	ENST00000260363.4,ENST00000352331.4,ENST00000558585.1,ENST00000395392.2,ENST00000537891.1,ENST00000559456.1,ENST00000559279.1,ENST00000561089.1	chr15	69728476:69728600:69728902:69729061:69730586:69730699,	69728903	69729061	69728957	69728957	Frame_Shift_Del	A	-	p.E484fs
LIHC	TCGA-G3-A3CJ-01	UACA	ENST00000539319.1	chr15	70987355:70987444:70991865:70991999:71055668:71055769,	70991866	70991999	70991908	70991908	Frame_Shift_Del	T	-	p.K57fs
LIHC	TCGA-G3-A3CJ-01	THSD4	ENST00000567838.1,ENST00000357769.4,ENST00000355327.3,ENST00000261862.6,ENST00000567745.1	chr15	72020887:72021063:72023459:72023556:72030070:72030346,	72023460	72023556	72023528	72023528	Frame_Shift_Del	C	-	p.S534fs
LIHC	TCGA-G3-A3CJ-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190822	72190822	Frame_Shift_Del	T	-	p.K1341fs
LIHC	TCGA-G3-A3CJ-01	MYO9A	ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000567560.1	chr15	72324834:72324929:72338064:72338975:72410020:72410109,	72338065	72338975	72338789	72338789	Frame_Shift_Del	T	-	p.N39fs
LIHC	TCGA-G3-A3CJ-01	CELF6	ENST00000287202.5,ENST00000395258.2,ENST00000437872.3,ENST00000539635.1	chr15	72580648:72580792:72580878:72580959:72581208:72581271,	72580879	72580959	72580908	72580908	Frame_Shift_Del	G	-	p.P382fs
LIHC	TCGA-G3-A3CJ-01	HEXA	ENST00000567159.1,ENST00000567411.1,ENST00000268097.5,ENST00000566304.1	chr15	72637799:72637891:72638575:72638666:72638867:72639051,	72638576	72638666	72638615	72638615	Frame_Shift_Del	C	-	p.G461fs
LIHC	TCGA-G3-A3CJ-01	BBS4	ENST00000569338.1,ENST00000268057.4,ENST00000539603.1,ENST00000569440.1,ENST00000565160.1,ENST00000567279.1,ENST00000564239.1,ENST00000566938.1,ENST00000566400.1,ENST00000566829.1,ENST00000562084.1,ENST00000563600.1,ENST00000542334.1,ENST00000395205.2	chr15	73004584:73004648:73007631:73007743:73009118:73009191,	73007632	73007743	73007741	73007741	Frame_Shift_Del	T	-	p.S110fs
LIHC	TCGA-G3-A3CJ-01	NEO1	ENST00000560328.1,ENST00000558964.1	chr15	73564795:73564903:73566151:73566346:73570471:73570540,	73566152	73566346	73566333	73566333	Frame_Shift_Del	C	-	p.F1049fs
LIHC	TCGA-G3-A3CJ-01	CD276	ENST00000318443.5,ENST00000561260.1,ENST00000561213.1,ENST00000560786.2	chr15	73991980:73992059:73994595:73994934:73995112:73995162,	73994596	73994934	73994674	73994674	Frame_Shift_Del	C	-	p.S53fs
LIHC	TCGA-G3-A3CJ-01	PML	ENST00000268058.3,ENST00000435786.2,ENST00000569965.1,ENST00000566068.1,ENST00000268059.6,ENST00000395135.3,ENST00000569477.1,ENST00000436891.3	chr15	74317220:74317268:74324912:74325056:74325496:74325546,	74324913	74325056	74325000	74325000	Frame_Shift_Del	G	-	p.G448fs
LIHC	TCGA-G3-A3CJ-01	CCDC33	ENST00000398814.3,ENST00000321288.5	chr15	74536343:74536489:74554780:74554914:74559018:74559128,	74554781	74554914	74554864	74554864	Frame_Shift_Del	G	-	p.W293fs
LIHC	TCGA-G3-A3CJ-01	UBL7	ENST00000564488.1,ENST00000361351.4,ENST00000565130.1,ENST00000566365.1,ENST00000567435.1,ENST00000395081.2,ENST00000565335.1	chr15	74741966:74742016:74742276:74742410:74743142:74743200,	74742277	74742410	74742320	74742320	Frame_Shift_Del	G	-	p.S209fs
LIHC	TCGA-G3-A3CJ-01	CLK3	ENST00000568605.1,ENST00000352989.5,ENST00000395066.3,ENST00000454830.2,ENST00000569063.1,ENST00000348245.3,ENST00000568488.1	chr15	74908214:74908239:74911537:74911689:74912349:74912548,	74911538	74911689	74911650	74911650	Frame_Shift_Del	C	-	p.S186fs
LIHC	TCGA-G3-A3CJ-01	EDC3	ENST00000565602.1,ENST00000566219.1,ENST00000562174.1,ENST00000315127.4,ENST00000568176.1,ENST00000426797.3	chr15	74927902:74927967:74932806:74932960:74948073:74948234,	74932807	74932960	74932915	74932915	Frame_Shift_Del	T	-	p.K289fs
LIHC	TCGA-G3-A3CJ-01	CYP1A1	ENST00000562201.1,ENST00000569630.1	chr15	75014613:75014682:75014875:75015464:75017781:75017832,	75014876	75015464	75015337	75015337	Frame_Shift_Del	G	-	p.P34fs
LIHC	TCGA-G3-A3CJ-01	ULK3	ENST00000564029.1	chr15	75134415:75134536:75134620:75134758:75135344:75135465,	75134621	75134758	75134647	75134647	Frame_Shift_Del	G	-	p.H73fs
LIHC	TCGA-G3-A3CJ-01	ULK3	ENST00000566479.1,ENST00000561725.1,ENST00000565881.1,ENST00000563301.1,ENST00000570276.1,ENST00000569437.1	chr15	75134415:75134459:75134620:75134761:75135344:75135465,75134415:75134536:75134620:75134761:75135344:75135465,	75134621	75134761	75134647	75134647	Frame_Shift_Del	G	-	p.H73fs
LIHC	TCGA-G3-A3CJ-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000394949.4	chr15	75673953:75674046:75676604:75676778:75681992:75682162,	75676605	75676778	75676628	75676628	Frame_Shift_Del	T	-	p.M1058fs
LIHC	TCGA-G3-A3CJ-01	SNUPN	ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75893478:75893559:75897490:75897568:75899556:75899654,	75897491	75897568	75897537	75897537	Frame_Shift_Del	T	-	p.K211fs
LIHC	TCGA-G3-A3CJ-01	SNUPN	ENST00000569817.1,ENST00000564086.1,ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000567134.1	chr15	75902230:75902335:75909748:75909893:75913234:75913397,	75909749	75909893	75909836	75909836	Frame_Shift_Del	C	-	p.G72fs
LIHC	TCGA-G3-A3CJ-01	UBE2Q2	ENST00000338677.4,ENST00000267938.4,ENST00000426727.2,ENST00000561851.1,ENST00000569423.1	chr15	76161291:76161351:76165768:76165909:76175706:76175765,76161291:76161351:76165768:76165909:76168527:76168612,	76165769	76165909	76165848	76165848	Frame_Shift_Del	A	-	p.E176fs
LIHC	TCGA-G3-A3CJ-01	UBE2Q2	ENST00000563966.1,ENST00000267938.4,ENST00000561851.1,ENST00000569423.1	chr15	76182775:76182824:76183259:76183355:76189335:76189402,	76183260	76183355	76183304	76183304	Frame_Shift_Del	A	-	p.I326fs
LIHC	TCGA-G3-A3CJ-01	ETFA	ENST00000560044.1	chr15	76584959:76585041:76587931:76588078:76603690:76603737,76584771:76584854:76587931:76588078:76603690:76603737,76584771:76584854:76587931:76588078:76602272:76602405,76584959:76585041:76587931:76588078:76602272:76602405,	76587932	76588078	76588013	76588013	Frame_Shift_Del	G	-	p.P35fs
LIHC	TCGA-G3-A3CJ-01	RCN2	ENST00000394885.3	chr15	77224701:77224807:77227866:77228063:77236098:77236212,	77227867	77228063	77228055	77228055	Frame_Shift_Del	T	-	p.F147fs
LIHC	TCGA-G3-A3CJ-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425841	77425841	Frame_Shift_Del	C	-	p.D1195fs
LIHC	TCGA-G3-A3CJ-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77425346:77426092:77450844:77451038:77471131:77471489,	77450845	77451038	77450976	77450976	Frame_Shift_Del	T	-	p.K1067fs
LIHC	TCGA-G3-A3CJ-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472525	77472525	Frame_Shift_Del	T	-	p.T582fs
LIHC	TCGA-G3-A3CJ-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77474065	77474065	Frame_Shift_Del	T	-	p.K68fs
LIHC	TCGA-G3-A3CJ-01	IDH3A	ENST00000558554.1,ENST00000559803.1,ENST00000559889.1,ENST00000299518.2,ENST00000560667.1,ENST00000441490.2,ENST00000558535.1	chr15	78457333:78457418:78458491:78458644:78461263:78461308,	78458492	78458644	78458586	78458586	Frame_Shift_Del	T	-	p.L320fs
LIHC	TCGA-G3-A3CJ-01	HYKK	ENST00000388988.4,ENST00000566332.1,ENST00000360519.3,ENST00000566289.1	chr15	78799958:78800013:78805425:78805767:78807309:78807449,	78805426	78805767	78805531	78805531	Frame_Shift_Del	T	-	p.V34fs
LIHC	TCGA-G3-A3CJ-01	HYKK	ENST00000388988.4,ENST00000566332.1,ENST00000360519.3,ENST00000566289.1	chr15	78799958:78800013:78805425:78805767:78807309:78807449,	78805426	78805767	78805647	78805647	Frame_Shift_Del	A	-	p.K73fs
LIHC	TCGA-G3-A3CJ-01	ADAMTS7	ENST00000568712.1,ENST00000565793.1,ENST00000388820.4,ENST00000566303.1	chr15	79082030:79082180:79083011:79083136:79083481:79083565,	79083012	79083136	79083055	79083055	Frame_Shift_Del	C	-	p.D329fs
LIHC	TCGA-G3-A3CJ-01	MORF4L1	ENST00000331268.5	chr15	79172906:79172921:79177308:79177425:79178482:79178503,	79177309	79177425	79177335	79177335	Frame_Shift_Del	A	-	p.E61fs
LIHC	TCGA-G3-A3CJ-01	MORF4L1	ENST00000559751.1	chr15	79172906:79172921:79177311:79177425:79178482:79178503,	79177312	79177425	79177335	79177335	Frame_Shift_Del	A	-	p.E61fs
LIHC	TCGA-G3-A3CJ-01	MORF4L1	ENST00000331268.5	chr15	79172906:79172921:79177308:79177425:79178482:79178503,	79177309	79177425	79177371	79177371	Frame_Shift_Del	T	-	p.L73fs
LIHC	TCGA-G3-A3CJ-01	MORF4L1	ENST00000559751.1	chr15	79172906:79172921:79177311:79177425:79178482:79178503,	79177312	79177425	79177371	79177371	Frame_Shift_Del	T	-	p.L73fs
LIHC	TCGA-G3-A3CJ-01	MORF4L1	ENST00000558746.1,ENST00000379535.4,ENST00000558830.1,ENST00000558502.1,ENST00000426013.2,ENST00000560710.1,ENST00000331268.5,ENST00000559751.1,ENST00000560422.1,ENST00000558923.1,ENST00000559158.1,ENST00000559345.1,ENST00000559690.1,ENST00000559258.1	chr15	79183893:79183914:79184553:79184655:79185880:79185932,	79184554	79184655	79184589	79184589	Frame_Shift_Del	A	-	p.V197fs
LIHC	TCGA-G3-A3CJ-01	MORF4L1	ENST00000558746.1,ENST00000379535.4,ENST00000558830.1,ENST00000558502.1,ENST00000426013.2,ENST00000560710.1,ENST00000331268.5,ENST00000559751.1,ENST00000560422.1,ENST00000558923.1,ENST00000559158.1,ENST00000559345.1,ENST00000559690.1,ENST00000559258.1	chr15	79183893:79183914:79184553:79184655:79185880:79185932,	79184554	79184655	79184607	79184607	Frame_Shift_Del	A	-	p.L203fs
LIHC	TCGA-G3-A3CJ-01	MORF4L1	ENST00000558746.1,ENST00000379535.4,ENST00000558830.1,ENST00000558502.1,ENST00000426013.2,ENST00000560710.1,ENST00000331268.5,ENST00000559751.1,ENST00000560422.1,ENST00000558923.1,ENST00000559158.1,ENST00000559345.1,ENST00000559690.1,ENST00000559258.1	chr15	79183893:79183914:79184553:79184655:79185880:79185932,	79184554	79184655	79184648	79184648	Frame_Shift_Del	A	-	p.Q217fs
LIHC	TCGA-G3-A3CJ-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000560943.1,ENST00000419573.3	chr15	79272998:79273041:79277348:79277546:79282530:79282615,	79277349	79277546	79277382	79277382	Frame_Shift_Del	C	-	p.R1143fs
LIHC	TCGA-G3-A3CJ-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79292084:79292255:79294003:79294129:79296143:79296517,	79294004	79294129	79294012	79294012	Frame_Shift_Del	T	-	p.N872fs
LIHC	TCGA-G3-A3CJ-01	ARNT2	ENST00000303329.4	chr15	80696692:80696888:80743220:80743335:80750269:80750317,	80743221	80743335	80743263	80743263	Frame_Shift_Del	C	-	p.A14fs
LIHC	TCGA-G3-A3CJ-01	IL16	ENST00000560241.1	chr15	81475200:81475237:81517639:81518052:81552112:81552221,	81517640	81518052	81517893	81517893	Frame_Shift_Del	G	-	p.Q51fs
LIHC	TCGA-G3-A3CJ-01	STARD5	ENST00000325346.6,ENST00000560723.1,ENST00000302824.6	chr15	81605008:81605744:81610749:81610843:81611679:81611797,	81610750	81610843	81610788	81610788	Frame_Shift_Del	A	-	p.F152fs
LIHC	TCGA-G3-A3CJ-01	TMC3	ENST00000359440.5,ENST00000558726.1	chr15	81623557:81625603:81627060:81627316:81628949:81628992,	81627061	81627316	81627090	81627090	Frame_Shift_Del	G	-	p.P811fs
LIHC	TCGA-G3-A3CJ-01	BTBD1	ENST00000379403.2,ENST00000261721.4	chr15	83710479:83710677:83718824:83718930:83725140:83725231,	83718825	83718930	83718873	83718873	Frame_Shift_Del	T	-	p.S206fs
LIHC	TCGA-G3-A3CJ-01	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83931794	83931794	Frame_Shift_Del	T	-	p.I737fs
LIHC	TCGA-G3-A3CJ-01	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83933307	83933307	Frame_Shift_Del	G	-	p.P232fs
LIHC	TCGA-G3-A3CJ-01	ADAMTSL3	ENST00000567476.1,ENST00000561483.1,ENST00000286744.5	chr15	84659837:84659966:84683293:84683476:84685134:84685251,	84683294	84683476	84683356	84683356	Frame_Shift_Del	T	-	p.L1347fs
LIHC	TCGA-G3-A3CJ-01	ADAMTSL3	ENST00000567476.1	chr15	84700086:84700184:84705524:84705756:84706514:84708179,	84705525	84705756	84705752	84705752	Frame_Shift_Del	C	-	p.S1661fs
LIHC	TCGA-G3-A3CJ-01	ALPK3	ENST00000558077.1,ENST00000258888.5	chr15	85406782:85406871:85407672:85407896:85410547:85410596,	85407673	85407896	85407726	85407726	Frame_Shift_Del	C	-	p.T1720fs
LIHC	TCGA-G3-A3CJ-01	SLC28A1	ENST00000537624.1,ENST00000286749.3,ENST00000394573.1	chr15	85478551:85478749:85486675:85486757:85487796:85487895,	85486676	85486757	85486747	85486747	Frame_Shift_Del	G	-	p.L551fs
LIHC	TCGA-G3-A3CJ-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85658669:85658718:85659214:85659350:85660871:85661063,	85659215	85659350	85659320	85659320	Frame_Shift_Del	T	-	p.I502fs
LIHC	TCGA-G3-A3CJ-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85659280:85659350:85660871:85661070:85664027:85664245,	85660872	85661070	85660894	85660894	Frame_Shift_Del	A	-	p.K520fs
LIHC	TCGA-G3-A3CJ-01	AKAP13	ENST00000557852.1,ENST00000394518.2,ENST00000560579.1,ENST00000361243.2,ENST00000560482.1,ENST00000394510.2	chr15	86251249:86251317:86253809:86253876:86259018:86259132,	86253810	86253876	86253869	86253869	Frame_Shift_Del	A	-	p.R1864fs
LIHC	TCGA-G3-A3CJ-01	AKAP13	ENST00000560676.1	chr15	86251249:86251317:86253812:86253876:86259018:86259132,	86253813	86253876	86253869	86253869	Frame_Shift_Del	A	-	p.R1864fs
LIHC	TCGA-G3-A3CJ-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86311408	86311408	Frame_Shift_Del	C	-	p.G545fs
LIHC	TCGA-G3-A3CJ-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86311570	86311570	Frame_Shift_Del	C	-	p.G491fs
LIHC	TCGA-G3-A3CJ-01	ISG20	ENST00000306072.5,ENST00000560741.1	chr15	89182683:89182825:89195340:89195541:89198645:89198742,	89195341	89195541	89195504	89195504	Frame_Shift_Del	G	-	p.R131fs
LIHC	TCGA-G3-A3CJ-01	ISG20	ENST00000558942.1,ENST00000560573.1	chr15	89182683:89182825:89193465:89195541:89198645:89198742,	89193466	89195541	89195504	89195504	Frame_Shift_Del	G	-	p.R131fs
LIHC	TCGA-G3-A3CJ-01	ISG20	ENST00000559876.1	chr15	89182683:89182825:89195400:89195541:89198645:89198742,	89195401	89195541	89195504	89195504	Frame_Shift_Del	G	-	p.R131fs
LIHC	TCGA-G3-A3CJ-01	ACAN	ENST00000560601.1	chr15	89402306:89402648:89403556:89403670:89414612:89414721,89402306:89402648:89403556:89403670:89411446:89411560,	89403557	89403670	89403636	89403636	Frame_Shift_Del	C	-	p.C2304fs
LIHC	TCGA-G3-A3CJ-01	MFGE8	ENST00000560937.1,ENST00000566497.1,ENST00000558018.1,ENST00000542878.1,ENST00000539437.1,ENST00000268150.8	chr15	89442691:89442763:89442886:89443042:89444781:89444869,	89442887	89443042	89443032	89443032	Frame_Shift_Del	C	-	p.G286fs
LIHC	TCGA-G3-A3CJ-01	FANCI	ENST00000567891.1,ENST00000570110.1,ENST00000563250.1	chr15	89787234:89787264:89790859:89790962:89801934:89802007,89787220:89787275:89790859:89790962:89801934:89802007,89787264:89787298:89790859:89790962:89801934:89802007,	89790860	89790962	89790910	89790910	Frame_Shift_Del	A	-	p.E11fs
LIHC	TCGA-G3-A3CJ-01	FANCI	ENST00000568670.1	chr15	89787234:89787264:89790859:89790957:89801934:89802007,	89790860	89790957	89790910	89790910	Frame_Shift_Del	A	-	p.E11fs
LIHC	TCGA-G3-A3CJ-01	FANCI	ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89811629:89811756:89816607:89816700:89817398:89817535,	89816608	89816700	89816689	89816689	Frame_Shift_Del	T	-	p.F322fs
LIHC	TCGA-G3-A3CJ-01	FANCI	ENST00000566895.1	chr15	89824400:89824531:89824995:89826481:89828326:89828449,	89824996	89826481	89826382	89826382	Frame_Shift_Del	A	-	p.R533fs
LIHC	TCGA-G3-A3CJ-01	FANCI	ENST00000566895.1,ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89843530:89843616:89844556:89844673:89847094:89847146,	89844557	89844673	89844571	89844571	Frame_Shift_Del	T	-	p.N968fs
LIHC	TCGA-G3-A3CJ-01	POLG	ENST00000268124.5,ENST00000442287.2,ENST00000530292.1	chr15	89861771:89861980:89862161:89862330:89862458:89862493,	89862162	89862330	89862280	89862280	Frame_Shift_Del	C	-	p.G1052fs
LIHC	TCGA-G3-A3CJ-01	RHCG	ENST00000560081.1,ENST00000544600.1,ENST00000558184.1,ENST00000268122.4	chr15	90022552:90022719:90023491:90023639:90026297:90026448,	90023492	90023639	90023502	90023502	Frame_Shift_Del	A	-	p.F220fs
LIHC	TCGA-G3-A3CJ-01	RHCG	ENST00000558030.1,ENST00000560081.1,ENST00000268122.4	chr15	90026345:90026448:90030029:90030216:90039591:90039802,	90030030	90030216	90030055	90030055	Frame_Shift_Del	G	-	p.R116fs
LIHC	TCGA-G3-A3CJ-01	WDR93	ENST00000268130.7,ENST00000560294.1,ENST00000444934.2	chr15	90272253:90272324:90272913:90273000:90274673:90274793,	90272914	90273000	90272957	90272957	Frame_Shift_Del	T	-	p.N389fs
LIHC	TCGA-G3-A3CJ-01	WDR93	ENST00000268130.7,ENST00000560294.1,ENST00000444934.2	chr15	90272253:90272324:90272913:90273000:90274673:90274793,	90272914	90273000	90272975	90272975	Frame_Shift_Del	A	-	p.L395fs
LIHC	TCGA-G3-A3CJ-01	ANPEP	ENST00000300060.6	chr15	90333690:90333772:90334183:90334324:90335390:90335558,	90334184	90334324	90334189	90334189	Frame_Shift_Del	A	-	p.F888fs
LIHC	TCGA-G3-A3CJ-01	IDH2	ENST00000560061.1,ENST00000539790.1,ENST00000540499.2,ENST00000330062.3	chr15	90630670:90630807:90631590:90631734:90631818:90631979,	90631591	90631734	90631689	90631689	Frame_Shift_Del	T	-	p.M194fs
LIHC	TCGA-G3-A3CJ-01	IQGAP1	ENST00000268182.5	chr15	90983733:90983847:90984737:90984916:90986625:90986710,	90984738	90984916	90984809	90984809	Frame_Shift_Del	A	-	p.K241fs
LIHC	TCGA-G3-A3CJ-01	SLCO3A1	ENST00000424469.2	chr15	92694184:92694244:92705985:92706228:92715009:92715077,	92705986	92706228	92706012	92706012	Frame_Shift_Del	G	-	p.G594fs
LIHC	TCGA-G3-A3CJ-01	CHD2	ENST00000557381.1,ENST00000556930.1,ENST00000309818.5,ENST00000420239.2,ENST00000556722.1,ENST00000394196.4	chr15	93444396:93444529:93467550:93467782:93470473:93470560,	93467551	93467782	93467725	93467725	Frame_Shift_Del	C	-	p.L79fs
LIHC	TCGA-G3-A3CJ-01	CHD2	ENST00000557381.1,ENST00000394196.4	chr15	93541378:93541491:93541728:93541851:93543741:93543870,93540531:93540633:93541728:93541851:93543741:93543870,	93541729	93541851	93541827	93541827	Frame_Shift_Del	G	-	p.K1328fs
LIHC	TCGA-G3-A3CJ-01	CHD2	ENST00000557381.1,ENST00000394196.4	chr15	93541378:93541491:93541728:93541851:93543741:93543870,93540531:93540633:93541728:93541851:93543741:93543870,	93541729	93541851	93541843	93541843	Frame_Shift_Del	G	-	p.G1334fs
LIHC	TCGA-G3-A3CJ-01	RGMA	ENST00000329082.7	chr15	93595549:93595737:93616144:93616260:93632147:93632433,	93616145	93616260	93616215	93616215	Frame_Shift_Del	C	-	p.G20fs
LIHC	TCGA-G3-A3CJ-01	MCTP2	ENST00000456504.1,ENST00000451018.3,ENST00000357742.4	chr15	95001365:95001475:95013561:95013671:95019924:95020022,	95013562	95013671	95013660	95013660	Frame_Shift_Del	T	-	p.I820fs
LIHC	TCGA-G3-A3CJ-01	IGF1R	ENST00000558762.1,ENST00000268035.6	chr15	99478052:99478282:99478544:99478655:99482429:99482589,	99478545	99478655	99478556	99478556	Frame_Shift_Del	G	-	p.L1066fs
LIHC	TCGA-G3-A3CJ-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670350	99670350	Frame_Shift_Del	T	-	p.G594fs
LIHC	TCGA-G3-A3CJ-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99671187	99671187	Frame_Shift_Del	A	-	p.R875fs
LIHC	TCGA-G3-A3CJ-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99671500	99671500	Frame_Shift_Del	C	-	p.P978fs
LIHC	TCGA-G3-A3CJ-01	LRRC28	ENST00000447360.2	chr15	99892573:99892676:99901540:99901716:99926234:99926240,	99901541	99901716	99901613	99901613	Frame_Shift_Del	C	-	p.L256fs
LIHC	TCGA-G3-A3CJ-01	ADAMTS17	ENST00000558960.1	chr15	100821433:100821606:100871093:100871259:100882025:100882210,	100871094	100871259	100871146	100871146	Frame_Shift_Del	G	-	p.P188fs
LIHC	TCGA-G3-A3CJ-01	ALDH1A3	ENST00000329841.5,ENST00000561338.1	chr15	101427776:101427917:101432714:101432844:101433149:101433192,	101432715	101432844	101432756	101432756	Frame_Shift_Del	T	-	p.A129fs
LIHC	TCGA-G3-A3CJ-01	SNRPA1	ENST00000394082.4,ENST00000559309.1	chr15	101825930:101826006:101827112:101827215:101827860:101827901,	101827113	101827215	101827132	101827132	Frame_Shift_Del	A	-	p.F147fs
LIHC	TCGA-G3-A3CJ-01	PCSK6	ENST00000348070.1,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000398185.2,ENST00000560921.1,ENST00000559678.1	chr15	101872056:101872236:101906400:101906537:101910539:101910673,	101906401	101906537	101906505	101906505	Frame_Shift_Del	T	-	p.N584fs
LIHC	TCGA-G3-A3CJ-01	PCSK6	ENST00000561444.1,ENST00000348070.1,ENST00000331826.7,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000558716.1,ENST00000398185.2,ENST00000560921.1,ENST00000344273.2,ENST00000560271.1,ENST00000398181.2,ENST00000559417.1,ENST00000559678.1	chr15	101933416:101933629:101938608:101938781:101968096:101968185,	101938609	101938781	101938684	101938684	Frame_Shift_Del	C	-	p.G306fs
LIHC	TCGA-G3-A3CJ-01	PCSK6	ENST00000561444.1,ENST00000348070.1,ENST00000561109.1,ENST00000561177.1,ENST00000358417.3,ENST00000558716.1,ENST00000398185.2,ENST00000560921.1,ENST00000344273.2,ENST00000560271.1,ENST00000398181.2,ENST00000559678.1	chr15	101970191:101970268:101971524:101971668:101972194:101972290,	101971525	101971668	101971589	101971589	Frame_Shift_Del	T	-	p.N197fs
LIHC	TCGA-G3-A3CJ-01	TM2D3	ENST00000559107.1,ENST00000559024.1,ENST00000333202.3	chr15	102190272:102190364:102191898:102191976:102192473:102192570,	102191899	102191976	102191946	102191946	Frame_Shift_Del	T	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	WASH4P	ENST00000462860.1,ENST00000538848.2,ENST00000483390.2,ENST00000326592.9	chr16	66540:66738:66915:67051:67290:67427,	66916	67051	66952	66952	Frame_Shift_Del	G	-	p.P228fs
LIHC	TCGA-G3-A3CJ-01	NPRL3	ENST00000483663.1,ENST00000468260.1,ENST00000405960.3,ENST00000457916.1,ENST00000445810.1,ENST00000399953.3,ENST00000428323.2,ENST00000399957.3,ENST00000473674.1,ENST00000399951.3	chr16	150369:150507:160522:160604:162620:162774,	160523	160604	160578	160578	Frame_Shift_Del	G	-	p.H193fs
LIHC	TCGA-G3-A3CJ-01	NPRL3	ENST00000483663.1,ENST00000468260.1,ENST00000405960.3,ENST00000457916.1,ENST00000445810.1,ENST00000399953.3,ENST00000428323.2,ENST00000399957.3,ENST00000473674.1,ENST00000399951.3	chr16	150369:150507:160522:160604:162620:162774,	160523	160604	160583	160583	Frame_Shift_Del	G	-	p.P190fs
LIHC	TCGA-G3-A3CJ-01	LUC7L	ENST00000397783.1,ENST00000426094.1,ENST00000293872.8,ENST00000337351.4,ENST00000419516.1,ENST00000418978.1,ENST00000397780.1,ENST00000495349.1,ENST00000429378.1,ENST00000464711.1	chr16	240120:240134:240539:240569:242925:243014,	240540	240569	240564	240564	Frame_Shift_Del	C	-	p.G261fs
LIHC	TCGA-G3-A3CJ-01	PDIA2	ENST00000404312.1,ENST00000467212.1,ENST00000219406.6	chr16	335311:335437:335505:335703:336352:336473,	335506	335703	335638	335638	Frame_Shift_Del	G	-	p.G353fs
LIHC	TCGA-G3-A3CJ-01	AXIN1	ENST00000354866.3,ENST00000481769.1,ENST00000461023.1,ENST00000262320.3	chr16	354303:354441:359972:360069:364542:364683,	359973	360069	360055	360055	Frame_Shift_Del	G	-	p.P345fs
LIHC	TCGA-G3-A3CJ-01	MRPL28	ENST00000483764.1	chr16	419067:419220:419930:420225:420498:420509,	419931	420225	420000	420000	Frame_Shift_Del	G	-	p.P73fs
LIHC	TCGA-G3-A3CJ-01	TMEM8A	ENST00000250930.3,ENST00000431232.2,ENST00000475348.1	chr16	424808:424892:425132:425256:425344:425431,	425133	425256	425192	425192	Frame_Shift_Del	G	-	p.P460fs
LIHC	TCGA-G3-A3CJ-01	TMEM8A	ENST00000250930.3,ENST00000431232.2	chr16	426135:426455:426543:426812:427036:427164,	426544	426812	426583	426583	Frame_Shift_Del	G	-	p.L289fs
LIHC	TCGA-G3-A3CJ-01	TMEM8A	ENST00000250930.3,ENST00000431232.2,ENST00000427313.1	chr16	426805:426812:427036:427164:427377:427585,	427037	427164	427110	427110	Frame_Shift_Del	C	-	p.V189fs
LIHC	TCGA-G3-A3CJ-01	TMEM8A	ENST00000476735.1	chr16	427426:427585:427670:427848:434255:434396,	427671	427848	427749	427749	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-G3-A3CJ-01	WDR90	ENST00000549091.1,ENST00000420061.2,ENST00000293879.4,ENST00000549648.1,ENST00000552943.1	chr16	702466:702535:703340:703451:703524:703670,	703341	703451	703445	703445	Frame_Shift_Del	A	-	p.T409fs
LIHC	TCGA-G3-A3CJ-01	WDR90	ENST00000552943.1	chr16	703524:703670:703745:705147:705306:705468,	703746	705147	705131	705131	Frame_Shift_Del	T	-	p.F515fs
LIHC	TCGA-G3-A3CJ-01	WDR90	ENST00000549091.1,ENST00000420061.2,ENST00000293879.4,ENST00000549648.1	chr16	703785:703803:705028:705147:705306:705468,	705029	705147	705131	705131	Frame_Shift_Del	T	-	p.F515fs
LIHC	TCGA-G3-A3CJ-01	WDR90	ENST00000548844.1,ENST00000552728.1	chr16	709244:709376:710611:710714:711050:711075,	710612	710714	710675	710675	Frame_Shift_Del	G	-	p.G1118fs
LIHC	TCGA-G3-A3CJ-01	WDR24	ENST00000248142.6,ENST00000293883.4	chr16	735868:735990:736067:736186:736743:736929,	736068	736186	736122	736122	Frame_Shift_Del	T	-	p.N466fs
LIHC	TCGA-G3-A3CJ-01	CCDC78	ENST00000463539.1,ENST00000466708.1,ENST00000293889.6,ENST00000482152.1,ENST00000485091.1,ENST00000345165.4	chr16	773094:773161:773856:773936:774105:774205,	773857	773936	773879	773879	Frame_Shift_Del	G	-	p.Q371fs
LIHC	TCGA-G3-A3CJ-01	CCDC78	ENST00000463539.1,ENST00000466708.1,ENST00000293889.6,ENST00000482152.1,ENST00000485091.1,ENST00000345165.4	chr16	773856:773936:774105:774205:774321:774509,	774106	774205	774178	774178	Frame_Shift_Del	A	-	p.F327fs
LIHC	TCGA-G3-A3CJ-01	HAGHL	ENST00000563156.1	chr16	778571:778604:778793:778895:783468:783847,	778794	778895	778878	778878	Frame_Shift_Del	A	-	p.K195fs
LIHC	TCGA-G3-A3CJ-01	MSLN	ENST00000563651.1,ENST00000563941.1,ENST00000566549.1,ENST00000569566.1,ENST00000545450.2,ENST00000382862.3	chr16	814646:814726:814906:815036:815109:815112,	814907	815036	814926	814926	Frame_Shift_Del	C	-	p.P134fs
LIHC	TCGA-G3-A3CJ-01	MSLN	ENST00000563651.1,ENST00000563941.1,ENST00000566549.1,ENST00000569566.1,ENST00000545450.2,ENST00000382862.3	chr16	814646:814726:814906:815036:815109:815112,	814907	815036	814987	814987	Frame_Shift_Del	G	-	p.R154fs
LIHC	TCGA-G3-A3CJ-01	CHTF18	ENST00000262315.9,ENST00000461268.1,ENST00000471202.1,ENST00000464728.1,ENST00000317063.6,ENST00000455171.2	chr16	844141:844201:845131:845356:845684:845720,	845132	845356	845285	845285	Frame_Shift_Del	C	-	p.P911fs
LIHC	TCGA-G3-A3CJ-01	UNKL	ENST00000389221.4,ENST00000502438.2,ENST00000301712.5,ENST00000508903.2,ENST00000382757.5	chr16	1449374:1449510:1451568:1451702:1453168:1453191,	1451569	1451702	1451578	1451578	Frame_Shift_Del	G	-	p.R197fs
LIHC	TCGA-G3-A3CJ-01	TELO2	ENST00000564507.1,ENST00000262319.6	chr16	1552313:1552405:1552645:1552762:1552931:1553003,	1552646	1552762	1552728	1552728	Frame_Shift_Del	C	-	p.A579fs
LIHC	TCGA-G3-A3CJ-01	IFT140	ENST00000426508.2	chr16	1575887:1576078:1576619:1576797:1607935:1608135,	1576620	1576797	1576754	1576754	Frame_Shift_Del	G	-	p.Q815fs
LIHC	TCGA-G3-A3CJ-01	IFT140	ENST00000397417.2	chr16	1575887:1576078:1576733:1576797:1607935:1608135,	1576734	1576797	1576754	1576754	Frame_Shift_Del	G	-	p.Q815fs
LIHC	TCGA-G3-A3CJ-01	MEIOB	ENST00000325962.3,ENST00000412554.2,ENST00000470044.1	chr16	1883988:1884367:1887784:1887871:1889255:1889439,	1887785	1887871	1887805	1887805	Frame_Shift_Del	T	-	p.R429fs
LIHC	TCGA-G3-A3CJ-01	SLC9A3R2	ENST00000432365.2,ENST00000563587.1,ENST00000564033.1,ENST00000561844.1,ENST00000424542.2,ENST00000566198.1,ENST00000565855.1	chr16	2086324:2086504:2086728:2086882:2086955:2086999,	2086729	2086882	2086802	2086802	Frame_Shift_Del	C	-	p.A223fs
LIHC	TCGA-G3-A3CJ-01	TSC2	ENST00000353929.4,ENST00000568566.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2114272:2114428:2115519:2115636:2120456:2120579,	2115520	2115636	2115615	2115615	Frame_Shift_Del	G	-	p.L565fs
LIHC	TCGA-G3-A3CJ-01	TSC2	ENST00000353929.4,ENST00000569110.1,ENST00000569930.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000497886.1,ENST00000439673.2	chr16	2133695:2133817:2134228:2134716:2134951:2135027,	2134229	2134716	2134364	2134364	Frame_Shift_Del	C	-	p.P1381fs
LIHC	TCGA-G3-A3CJ-01	RAB26	ENST00000541451.1,ENST00000210187.6,ENST00000562735.1	chr16	2198792:2198979:2199941:2200052:2201569:2201611,	2199942	2200052	2199953	2199953	Frame_Shift_Del	G	-	p.V69fs
LIHC	TCGA-G3-A3CJ-01	RAB26	ENST00000541451.1,ENST00000210187.6,ENST00000562735.1	chr16	2198792:2198979:2199941:2200052:2201569:2201611,	2199942	2200052	2199962	2199962	Frame_Shift_Del	G	-	p.S72fs
LIHC	TCGA-G3-A3CJ-01	RNPS1	ENST00000569598.2,ENST00000565870.1,ENST00000561518.1,ENST00000561718.1,ENST00000301730.8,ENST00000566458.1,ENST00000320225.5,ENST00000566397.1,ENST00000565678.1,ENST00000568631.1,ENST00000397086.2	chr16	2304029:2304064:2305585:2305727:2312278:2312432,	2305586	2305727	2305663	2305663	Frame_Shift_Del	G	-	p.P247fs
LIHC	TCGA-G3-A3CJ-01	SRRM2	ENST00000573692.1,ENST00000574866.1,ENST00000574331.1,ENST00000301740.8	chr16	2820361:2820466:2820604:2820718:2820858:2820935,	2820605	2820718	2820655	2820655	Frame_Shift_Del	C	-	p.S2729fs
LIHC	TCGA-G3-A3CJ-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983149:2983583:2983716:2983980:2987121:2987271,	2983717	2983980	2983745	2983745	Frame_Shift_Del	G	-	p.L426fs
LIHC	TCGA-G3-A3CJ-01	TNFRSF12A	ENST00000341627.5	chr16	3070379:3070492:3071555:3071690:3071771:3071964,	3071556	3071690	3071624	3071624	Frame_Shift_Del	T	-	p.L144fs
LIHC	TCGA-G3-A3CJ-01	ZSCAN10	ENST00000576985.1	chr16	3141764:3141829:3142542:3143005:3149190:3149229,3142229:3142317:3142542:3143005:3149190:3149229,	3142543	3143005	3142723	3142723	Frame_Shift_Del	C	-	p.W17fs
LIHC	TCGA-G3-A3CJ-01	ZSCAN10	ENST00000572548.1	chr16	3141764:3141829:3142677:3143005:3149190:3149229,	3142678	3143005	3142723	3142723	Frame_Shift_Del	C	-	p.W17fs
LIHC	TCGA-G3-A3CJ-01	ZNF205	ENST00000570935.1,ENST00000219091.4,ENST00000414351.1,ENST00000382192.3	chr16	3165521:3165569:3165829:3165921:3166427:3166548,	3165830	3165921	3165839	3165839	Frame_Shift_Del	C	-	p.S94fs
LIHC	TCGA-G3-A3CJ-01	ZNF213	ENST00000574575.1	chr16	3187650:3187680:3188418:3188542:3188745:3188819,3187650:3187680:3188418:3188542:3188975:3189099,3187650:3187680:3188418:3188542:3190689:3191356,	3188419	3188542	3188425	3188425	Frame_Shift_Del	C	-	p.P136fs
LIHC	TCGA-G3-A3CJ-01	ZNF213	ENST00000576863.1	chr16	3187650:3187680:3188354:3188542:3188745:3188819,	3188355	3188542	3188425	3188425	Frame_Shift_Del	C	-	p.P136fs
LIHC	TCGA-G3-A3CJ-01	ZSCAN32	ENST00000573719.1	chr16	3440422:3440517:3443648:3443814:3447191:3447194,3434839:3434941:3443648:3443814:3447191:3447194,	3443649	3443814	3443798	3443798	Frame_Shift_Del	T	-	p.K128fs
LIHC	TCGA-G3-A3CJ-01	SLX4	ENST00000294008.3	chr16	3650979:3651192:3652118:3652308:3656474:3656699,	3652119	3652308	3652197	3652197	Frame_Shift_Del	T	-	p.K291fs
LIHC	TCGA-G3-A3CJ-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820810	3820810	Frame_Shift_Del	G	-	p.Q881fs
LIHC	TCGA-G3-A3CJ-01	DNAJA3	ENST00000431375.2,ENST00000577083.1,ENST00000576911.1,ENST00000262375.6,ENST00000355296.4	chr16	4493017:4493165:4494664:4494729:4496886:4497015,	4494665	4494729	4494702	4494702	Frame_Shift_Del	A	-	p.G323fs
LIHC	TCGA-G3-A3CJ-01	HMOX2	ENST00000414777.1,ENST00000406590.2,ENST00000575120.1,ENST00000570646.1,ENST00000575051.1,ENST00000458134.3,ENST00000219700.6,ENST00000398595.3	chr16	4556895:4557013:4557713:4558205:4559412:4559431,	4557714	4558205	4557933	4557933	Frame_Shift_Del	G	-	p.G142fs
LIHC	TCGA-G3-A3CJ-01	ANKS3	ENST00000591185.1,ENST00000592077.1,ENST00000585773.1,ENST00000589035.1,ENST00000590803.1,ENST00000590193.1,ENST00000446014.2,ENST00000304283.4,ENST00000591653.1,ENST00000588513.1	chr16	4747353:4747417:4747977:4748063:4748427:4748600,	4747978	4748063	4747983	4747983	Frame_Shift_Del	G	-	p.P602fs
LIHC	TCGA-G3-A3CJ-01	ANKS3	ENST00000591185.1,ENST00000592077.1,ENST00000585773.1,ENST00000589035.1,ENST00000590803.1,ENST00000590193.1,ENST00000446014.2,ENST00000304283.4,ENST00000591653.1,ENST00000588513.1	chr16	4747353:4747417:4747977:4748063:4748427:4748600,	4747978	4748063	4748016	4748016	Frame_Shift_Del	G	-	p.P591fs
LIHC	TCGA-G3-A3CJ-01	ANKS3	ENST00000585773.1	chr16	4776659:4776781:4776979:4777178:4779980:4780152,4774825:4774832:4776979:4777178:4779980:4780152,4776659:4776781:4776979:4777178:4784156:4784193,	4776980	4777178	4777134	4777134	Frame_Shift_Del	G	-	p.P72fs
LIHC	TCGA-G3-A3CJ-01	C16orf71	ENST00000299320.5,ENST00000590191.1	chr16	4796927:4797026:4797343:4797635:4798725:4799396,	4797344	4797635	4797357	4797357	Frame_Shift_Del	A	-	p.K432fs
LIHC	TCGA-G3-A3CJ-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861170:4861295:4861623:4861803:4862086:4862249,	4861624	4861803	4861709	4861709	Frame_Shift_Del	G	-	p.H459fs
LIHC	TCGA-G3-A3CJ-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000589389.1,ENST00000321919.9,ENST00000586901.1,ENST00000591451.1	chr16	4873821:4873908:4881979:4882222:4882774:4882913,	4881980	4882222	4882049	4882049	Frame_Shift_Del	G	-	p.S156fs
LIHC	TCGA-G3-A3CJ-01	UBN1	ENST00000262376.6,ENST00000545171.1	chr16	4897911:4898211:4902879:4903167:4907990:4908077,	4902880	4903167	4902976	4902976	Frame_Shift_Del	T	-	p.F20fs
LIHC	TCGA-G3-A3CJ-01	UBN1	ENST00000262376.6,ENST00000590769.1,ENST00000396658.4,ENST00000545171.1	chr16	4911059:4911103:4918833:4918904:4920212:4920342,	4918834	4918904	4918900	4918900	Frame_Shift_Del	T	-	p.L393fs
LIHC	TCGA-G3-A3CJ-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4940184:4940335:4940728:4940922:4941811:4941950,	4940729	4940922	4940734	4940734	Frame_Shift_Del	T	-	p.E719fs
LIHC	TCGA-G3-A3CJ-01	NAGPA	ENST00000562746.1,ENST00000312251.3,ENST00000568202.1	chr16	5077135:5077199:5077278:5077380:5077846:5077894,	5077279	5077380	5077305	5077305	Frame_Shift_Del	T	-	p.K417fs
LIHC	TCGA-G3-A3CJ-01	ABAT	ENST00000425191.2,ENST00000567812.1,ENST00000396600.2,ENST00000565671.1,ENST00000268251.8,ENST00000569156.1,ENST00000566590.1	chr16	8841964:8841994:8844278:8844396:8851613:8851661,	8844279	8844396	8844371	8844371	Frame_Shift_Del	T	-	p.Y97fs
LIHC	TCGA-G3-A3CJ-01	PMM2	ENST00000569958.1	chr16	8895655:8895767:8905498:8905570:8906847:8906924,	8905499	8905570	8905548	8905548	Frame_Shift_Del	A	-	p.G167fs
LIHC	TCGA-G3-A3CJ-01	PMM2	ENST00000570076.1	chr16	8900172:8900264:8905494:8905570:8906847:8906924,8895655:8895767:8905494:8905570:8906847:8906924,	8905495	8905570	8905548	8905548	Frame_Shift_Del	A	-	p.G167fs
LIHC	TCGA-G3-A3CJ-01	CARHSP1	ENST00000311052.5	chr16	8952274:8952329:8953027:8953192:8962822:8962863,	8953028	8953192	8953079	8953079	Frame_Shift_Del	C	-	p.G36fs
LIHC	TCGA-G3-A3CJ-01	CARHSP1	ENST00000311052.5	chr16	8952274:8952329:8953027:8953192:8962822:8962863,	8953028	8953192	8953115	8953115	Frame_Shift_Del	G	-	p.P24fs
LIHC	TCGA-G3-A3CJ-01	USP7	ENST00000563961.1,ENST00000567692.1,ENST00000344836.4,ENST00000565455.1,ENST00000563085.1,ENST00000535863.1,ENST00000381886.4	chr16	8993031:8993045:8993460:8993614:8994386:8994487,	8993461	8993614	8993510	8993510	Frame_Shift_Del	T	-	p.N805fs
LIHC	TCGA-G3-A3CJ-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551329	10551329	Frame_Shift_Del	A	-	p.E432fs
LIHC	TCGA-G3-A3CJ-01	ATF7IP2	ENST00000396559.1,ENST00000324570.5,ENST00000356427.2,ENST00000396560.2	chr16	10534220:10534319:10551228:10551386:10565966:10566040,	10551229	10551386	10551340	10551340	Frame_Shift_Del	A	-	p.K437fs
LIHC	TCGA-G3-A3CJ-01	NUBP1	ENST00000433392.2	chr16	10846466:10846535:10850546:10850637:10851729:10851851,	10850547	10850637	10850631	10850631	Frame_Shift_Del	A	-	p.K149fs
LIHC	TCGA-G3-A3CJ-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001500	11001500	Frame_Shift_Del	G	-	p.L717fs
LIHC	TCGA-G3-A3CJ-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001500	11001500	Frame_Shift_Del	G	-	p.L717fs
LIHC	TCGA-G3-A3CJ-01	CIITA	ENST00000324288.8,ENST00000570546.1,ENST00000381835.5	chr16	11016023:11016107:11016263:11016347:11017084:11017182,	11016264	11016347	11016292	11016292	Frame_Shift_Del	G	-	p.G1088fs
LIHC	TCGA-G3-A3CJ-01	CLEC16A	ENST00000494853.1,ENST00000409790.1	chr16	11076734:11076848:11096930:11097162:11114049:11114182,	11096931	11097162	11097131	11097131	Frame_Shift_Del	A	-	p.S424fs
LIHC	TCGA-G3-A3CJ-01	LITAF	ENST00000570904.1,ENST00000574701.1	chr16	11647388:11647545:11650366:11650591:11669261:11669442,11647388:11647545:11650366:11650591:11680741:11680759,11647388:11647545:11650366:11650591:11681006:11681103,	11650367	11650591	11650397	11650397	Frame_Shift_Del	G	-	p.Q64fs
LIHC	TCGA-G3-A3CJ-01	TXNDC11	ENST00000573174.1	chr16	11794307:11794420:11815432:11815526:11827837:11827855,11794307:11794420:11815432:11815526:11824500:11824630,11791989:11792181:11815432:11815526:11827837:11827855,	11815433	11815526	11815487	11815487	Frame_Shift_Del	G	-	p.Q247fs
LIHC	TCGA-G3-A3CJ-01	TXNDC11	ENST00000283033.5,ENST00000356957.3	chr16	11815432:11815526:11824500:11824630:11827837:11827855,	11824501	11824630	11824576	11824576	Frame_Shift_Del	A	-	p.F208fs
LIHC	TCGA-G3-A3CJ-01	ZC3H7A	ENST00000571198.1,ENST00000355758.4,ENST00000396516.2	chr16	11852286:11852395:11855261:11855367:11855765:11855899,	11855262	11855367	11855272	11855272	Frame_Shift_Del	A	-	p.L770fs
LIHC	TCGA-G3-A3CJ-01	ZC3H7A	ENST00000571405.1,ENST00000571198.1,ENST00000355758.4,ENST00000396516.2	chr16	11857333:11857515:11858908:11859009:11859344:11859417,	11858909	11859009	11858969	11858969	Frame_Shift_Del	T	-	p.N587fs
LIHC	TCGA-G3-A3CJ-01	RSL1D1	ENST00000542106.1,ENST00000396503.3	chr16	11940590:11940700:11941524:11941663:11944135:11944270,11940590:11940700:11941524:11941663:11945264:11945365,	11941525	11941663	11941556	11941556	Frame_Shift_Del	A	-	p.L118fs
LIHC	TCGA-G3-A3CJ-01	GSPT1	ENST00000565267.1,ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11980633:11980788:11981426:11981607:11984918:11984996,	11981427	11981607	11981470	11981470	Frame_Shift_Del	G	-	p.P305fs
LIHC	TCGA-G3-A3CJ-01	SHISA9	ENST00000558583.1	chr16	12995613:12996484:13010544:13010672:13297250:13297406,	13010545	13010672	13010655	13010655	Frame_Shift_Del	C	-	p.T266fs
LIHC	TCGA-G3-A3CJ-01	PARN	ENST00000437198.2,ENST00000341484.7,ENST00000539279.1,ENST00000569444.1,ENST00000420015.2	chr16	14678605:14678648:14680174:14680218:14687157:14687235,	14680175	14680218	14680177	14680177	Frame_Shift_Del	G	-	p.P320fs
LIHC	TCGA-G3-A3CJ-01	BFAR	ENST00000562121.1	chr16	14738190:14738466:14742244:14742449:14743660:14743830,14738144:14738466:14742244:14742449:14748922:14749028,	14742245	14742449	14742414	14742414	Frame_Shift_Del	T	-	p.F145fs
LIHC	TCGA-G3-A3CJ-01	NTAN1	ENST00000567420.1	chr16	15141711:15141777:15141853:15141956:15149597:15149644,	15141854	15141956	15141859	15141859	Frame_Shift_Del	T	-	p.K60fs
LIHC	TCGA-G3-A3CJ-01	RRN3	ENST00000540462.1,ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1	chr16	15163926:15164111:15164977:15165108:15166806:15166937,	15164978	15165108	15165070	15165070	Frame_Shift_Del	T	-	p.K389fs
LIHC	TCGA-G3-A3CJ-01	RRN3	ENST00000540462.1,ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1	chr16	15164977:15165108:15166806:15166937:15168579:15168718,	15166807	15166937	15166827	15166827	Frame_Shift_Del	A	-	p.Y370fs
LIHC	TCGA-G3-A3CJ-01	RRN3	ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1,ENST00000564131.1,ENST00000561685.1	chr16	15170414:15170507:15173854:15173953:15177369:15177439,	15173855	15173953	15173870	15173870	Frame_Shift_Del	T	-	p.K250fs
LIHC	TCGA-G3-A3CJ-01	NDE1	ENST00000396354.1,ENST00000396353.2,ENST00000573203.1,ENST00000577101.1,ENST00000342673.5,ENST00000572756.1,ENST00000396355.1	chr16	15771781:15771806:15781231:15781368:15785000:15785076,	15781232	15781368	15781272	15781272	Frame_Shift_Del	A	-	p.N143fs
LIHC	TCGA-G3-A3CJ-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15831305:15831477:15832421:15832545:15833907:15834045,	15832422	15832545	15832454	15832454	Frame_Shift_Del	T	-	p.N1030fs
LIHC	TCGA-G3-A3CJ-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15831305:15831477:15832421:15832545:15833907:15834045,	15832422	15832545	15832481	15832481	Frame_Shift_Del	T	-	p.K1021fs
LIHC	TCGA-G3-A3CJ-01	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000300036.5,ENST00000396324.3	chr16	15832421:15832545:15833907:15834045:15835319:15835499,	15833908	15834045	15834007	15834007	Frame_Shift_Del	C	-	p.R966fs
LIHC	TCGA-G3-A3CJ-01	MYH11	ENST00000576790.2,ENST00000300036.5	chr16	15872636:15872700:15876241:15876334:15880486:15880589,	15876242	15876334	15876271	15876271	Frame_Shift_Del	T	-	p.T233fs
LIHC	TCGA-G3-A3CJ-01	MYH11	ENST00000576790.2,ENST00000300036.5	chr16	15872636:15872700:15876241:15876334:15880486:15880589,	15876242	15876334	15876303	15876303	Frame_Shift_Del	T	-	p.N222fs
LIHC	TCGA-G3-A3CJ-01	ABCC6	ENST00000205557.7	chr16	16255294:16255421:16259479:16259790:16263502:16263710,16256849:16257049:16259479:16259790:16263502:16263710,	16259480	16259790	16259746	16259746	Frame_Shift_Del	C	-	p.A1014fs
LIHC	TCGA-G3-A3CJ-01	ABCC6	ENST00000205557.7,ENST00000456970.2	chr16	16259479:16259790:16263502:16263710:16267140:16267261,	16263503	16263710	16263662	16263662	Frame_Shift_Del	G	-	p.L946fs
LIHC	TCGA-G3-A3CJ-01	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19056662:19056760:19058384:19058571:19063007:19063138,	19058385	19058571	19058506	19058506	Frame_Shift_Del	T	-	p.F450fs
LIHC	TCGA-G3-A3CJ-01	TMC7	ENST00000304381.5,ENST00000569532.1,ENST00000421369.3	chr16	19063007:19063138:19067863:19068019:19070737:19070816,	19067864	19068019	19067877	19067877	Frame_Shift_Del	A	-	p.K519fs
LIHC	TCGA-G3-A3CJ-01	COQ7	ENST00000569312.1,ENST00000568985.1,ENST00000544894.2,ENST00000566049.1,ENST00000321998.5,ENST00000569127.1	chr16	19087042:19087182:19088627:19088696:19089402:19089481,	19088628	19088696	19088675	19088675	Frame_Shift_Del	C	-	p.G185fs
LIHC	TCGA-G3-A3CJ-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000572147.1,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19488761:19488840:19490752:19490850:19492691:19492748,	19490753	19490850	19490833	19490833	Frame_Shift_Del	G	-	p.L750fs
LIHC	TCGA-G3-A3CJ-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19547373	19547373	Frame_Shift_Del	C	-	p.P128fs
LIHC	TCGA-G3-A3CJ-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548683	19548683	Frame_Shift_Del	G	-	p.M564fs
LIHC	TCGA-G3-A3CJ-01	IQCK	ENST00000320394.6,ENST00000308214.9	chr16	19727777:19727864:19729016:19729809:19741751:19741816,	19729017	19729809	19729649	19729649	Frame_Shift_Del	C	-	p.I7fs
LIHC	TCGA-G3-A3CJ-01	IQCK	ENST00000320394.6,ENST00000541926.1,ENST00000564186.1,ENST00000564955.1,ENST00000433597.2	chr16	19745019:19745149:19775169:19775222:19775356:19775434,19746674:19746772:19775169:19775222:19775356:19775434,	19775170	19775222	19775199	19775199	Frame_Shift_Del	T	-	p.D168fs
LIHC	TCGA-G3-A3CJ-01	IQCK	ENST00000568126.1	chr16	19745019:19745149:19775169:19775434:19800159:19800244,19746735:19746772:19775169:19775434:19800159:19800244,	19775170	19775434	19775199	19775199	Frame_Shift_Del	T	-	p.D168fs
LIHC	TCGA-G3-A3CJ-01	GP2	ENST00000573897.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20329723:20329752:20330941:20331090:20331583:20331652,	20330942	20331090	20331062	20331062	Frame_Shift_Del	T	-	p.N296fs
LIHC	TCGA-G3-A3CJ-01	GP2	ENST00000573897.1,ENST00000575582.1,ENST00000341642.5,ENST00000381362.4,ENST00000302555.5,ENST00000381360.5	chr16	20331072:20331090:20331583:20331795:20334190:20334301,	20331584	20331795	20331758	20331758	Frame_Shift_Del	G	-	p.P228fs
LIHC	TCGA-G3-A3CJ-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20348612:20348775:20352412:20352658:20355345:20355448,	20352413	20352658	20352577	20352577	Frame_Shift_Del	G	-	p.P504fs
LIHC	TCGA-G3-A3CJ-01	ACSM5	ENST00000570305.1,ENST00000331849.4	chr16	20432595:20432723:20435237:20435391:20439109:20439189,	20435238	20435391	20435243	20435243	Frame_Shift_Del	G	-	p.W258fs
LIHC	TCGA-G3-A3CJ-01	ACSM5	ENST00000570305.1,ENST00000331849.4	chr16	20432595:20432723:20435237:20435391:20439109:20439189,	20435238	20435391	20435345	20435345	Frame_Shift_Del	T	-	p.I292fs
LIHC	TCGA-G3-A3CJ-01	ACSM2B	ENST00000565232.1,ENST00000329697.6,ENST00000569364.1,ENST00000567288.1,ENST00000563943.1,ENST00000565322.1,ENST00000567001.1	chr16	20557721:20557796:20559383:20559507:20559715:20559795,	20559384	20559507	20559405	20559405	Frame_Shift_Del	T	-	p.E359fs
LIHC	TCGA-G3-A3CJ-01	METTL9	ENST00000567404.1	chr16	21610912:21611219:21623965:21624156:21629185:21629330,21611038:21611149:21623965:21624156:21629185:21629330,21608542:21608621:21623965:21624156:21629185:21629330,	21623966	21624156	21624055	21624055	Frame_Shift_Del	A	-	p.L85fs
LIHC	TCGA-G3-A3CJ-01	METTL9	ENST00000567404.1	chr16	21610912:21611219:21623965:21624156:21629185:21629330,21611038:21611149:21623965:21624156:21629185:21629330,21608542:21608621:21623965:21624156:21629185:21629330,	21623966	21624156	21624120	21624120	Frame_Shift_Del	T	-	p.V107fs
LIHC	TCGA-G3-A3CJ-01	METTL9	ENST00000567404.1,ENST00000396014.4,ENST00000358154.3,ENST00000562961.1	chr16	21610912:21611219:21629185:21629395:21636251:21636435,21624020:21624156:21629185:21629395:21636251:21636435,	21629186	21629395	21629244	21629244	Frame_Shift_Del	A	-	p.K139fs
LIHC	TCGA-G3-A3CJ-01	VWA3A	ENST00000299840.6,ENST00000566668.1,ENST00000389397.4,ENST00000389398.5	chr16	22134405:22134486:22134933:22135028:22137498:22137618,	22134934	22135028	22135022	22135022	Frame_Shift_Del	A	-	p.E509fs
LIHC	TCGA-G3-A3CJ-01	EEF2K	ENST00000568269.1	chr16	22217646:22218000:22236974:22237296:22255950:22256051,	22236975	22237296	22237278	22237278	Frame_Shift_Del	A	-	p.A76fs
LIHC	TCGA-G3-A3CJ-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339853	22339853	Frame_Shift_Del	C	-	p.S630fs
LIHC	TCGA-G3-A3CJ-01	POLR3E	ENST00000418581.2,ENST00000299853.5,ENST00000563282.1,ENST00000564750.1	chr16	22339842:22339908:22343380:22343506:22344964:22345017,	22343381	22343506	22343403	22343403	Frame_Shift_Del	T	-	p.I656fs
LIHC	TCGA-G3-A3CJ-01	USP31	ENST00000563525.1,ENST00000219689.7	chr16	23091316:23091492:23093758:23093878:23096180:23096310,	23093759	23093878	23093870	23093870	Frame_Shift_Del	G	-	p.P613fs
LIHC	TCGA-G3-A3CJ-01	SCNN1B	ENST00000568085.1	chr16	23379176:23379280:23382619:23382783:23387058:23387176,	23382620	23382783	23382717	23382717	Frame_Shift_Del	C	-	p.Y326fs
LIHC	TCGA-G3-A3CJ-01	GGA2	ENST00000569182.1,ENST00000309859.4	chr16	23486273:23486382:23489688:23489822:23490203:23490232,	23489689	23489822	23489698	23489698	Frame_Shift_Del	G	-	p.P428fs
LIHC	TCGA-G3-A3CJ-01	ERN2	ENST00000457008.2	chr16	23707214:23707299:23711859:23712025:23713472:23713594,	23711860	23712025	23711929	23711929	Frame_Shift_Del	C	-	p.A534fs
LIHC	TCGA-G3-A3CJ-01	ERN2	ENST00000562562.1	chr16	23707214:23707299:23711859:23712435:23713472:23713594,	23711860	23712435	23711929	23711929	Frame_Shift_Del	C	-	p.A534fs
LIHC	TCGA-G3-A3CJ-01	ERN2	ENST00000256797.4	chr16	23711859:23712025:23712279:23712435:23713472:23713594,	23712280	23712435	23712378	23712378	Frame_Shift_Del	T	-	p.T469fs
LIHC	TCGA-G3-A3CJ-01	ERN2	ENST00000562562.1	chr16	23707214:23707299:23711859:23712435:23713472:23713594,	23711860	23712435	23712378	23712378	Frame_Shift_Del	T	-	p.T469fs
LIHC	TCGA-G3-A3CJ-01	ERN2	ENST00000562562.1,ENST00000457008.2,ENST00000256797.4	chr16	23716203:23716468:23717650:23717752:23718074:23718175,	23717651	23717752	23717673	23717673	Frame_Shift_Del	G	-	p.P237fs
LIHC	TCGA-G3-A3CJ-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24741573:24741621:24762046:24762134:24769659:24769681,	24762047	24762134	24762082	24762082	Frame_Shift_Del	A	-	p.E30fs
LIHC	TCGA-G3-A3CJ-01	TNRC6A	ENST00000315183.7,ENST00000395799.3	chr16	24741573:24741621:24762046:24762134:24769659:24769681,	24762047	24762134	24762087	24762087	Frame_Shift_Del	A	-	p.K35fs
LIHC	TCGA-G3-A3CJ-01	TNRC6A	ENST00000491718.1,ENST00000315183.7,ENST00000567232.1,ENST00000395799.3,ENST00000450465.2	chr16	24805864:24806040:24807227:24807260:24808810:24808824,	24807228	24807260	24807240	24807240	Frame_Shift_Del	A	-	p.K1182fs
LIHC	TCGA-G3-A3CJ-01	SLC5A11	ENST00000488922.2,ENST00000424767.2,ENST00000449109.2,ENST00000347898.3,ENST00000539472.1,ENST00000569071.1,ENST00000567758.1,ENST00000565769.1	chr16	24873921:24873993:24881221:24881326:24883480:24883540,	24881222	24881326	24881250	24881250	Frame_Shift_Del	T	-	p.V79fs
LIHC	TCGA-G3-A3CJ-01	ZKSCAN2	ENST00000328086.7,ENST00000565590.1	chr16	25258027:25258711:25263229:25263356:25264266:25264358,	25263230	25263356	25263345	25263345	Frame_Shift_Del	T	-	p.K230fs
LIHC	TCGA-G3-A3CJ-01	KDM8	ENST00000441782.2,ENST00000286096.4	chr16	27221902:27221942:27224905:27225072:27226196:27226329,	27224906	27225072	27224959	27224959	Frame_Shift_Del	C	-	p.V184fs
LIHC	TCGA-G3-A3CJ-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509077	27509077	Frame_Shift_Del	C	-	p.G744fs
LIHC	TCGA-G3-A3CJ-01	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27751393	27751393	Frame_Shift_Del	T	-	p.L592fs
LIHC	TCGA-G3-A3CJ-01	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27751450	27751450	Frame_Shift_Del	C	-	p.A611fs
LIHC	TCGA-G3-A3CJ-01	KIAA0556	ENST00000261588.4	chr16	27751361:27752241:27760904:27761627:27763039:27763245,	27760905	27761627	27760986	27760986	Frame_Shift_Del	C	-	p.S902fs
LIHC	TCGA-G3-A3CJ-01	XPO6	ENST00000564905.1,ENST00000304658.5,ENST00000565698.1,ENST00000562408.1	chr16	28132990:28133083:28137009:28137169:28143654:28143684,	28137010	28137169	28137026	28137026	Frame_Shift_Del	G	-	p.L584fs
LIHC	TCGA-G3-A3CJ-01	XPO6	ENST00000304658.5,ENST00000565698.1,ENST00000565284.1,ENST00000564337.1	chr16	28146536:28146645:28157414:28157524:28163979:28164106,	28157415	28157524	28157496	28157496	Frame_Shift_Del	A	-	p.L418fs
LIHC	TCGA-G3-A3CJ-01	CLN3	ENST00000561505.1,ENST00000568558.1,ENST00000357806.7,ENST00000395653.4,ENST00000566824.1,ENST00000561689.1	chr16	28498982:28499062:28499911:28499983:28500610:28500707,28498776:28498862:28499911:28499983:28500610:28500707,	28499912	28499983	28499956	28499956	Frame_Shift_Del	G	-	p.H84fs
LIHC	TCGA-G3-A3CJ-01	SULT1A2	ENST00000533150.1	chr16	28603583:28603802:28606687:28606996:28607103:28607255,	28606688	28606996	28606714	28606714	Frame_Shift_Del	G	-	p.P144fs
LIHC	TCGA-G3-A3CJ-01	SULT1A1	ENST00000562058.1,ENST00000395609.1,ENST00000564818.1	chr16	28621251:28621512:28631383:28631454:28634451:28634573,	28631384	28631454	28631418	28631418	Frame_Shift_Del	A	-	p.L35fs
LIHC	TCGA-G3-A3CJ-01	ATXN2L	ENST00000325215.6,ENST00000564304.1,ENST00000382686.4,ENST00000395547.2,ENST00000336783.4,ENST00000340394.8,ENST00000568266.1,ENST00000563314.1,ENST00000570200.1	chr16	28837560:28837711:28838182:28838307:28840721:28840813,	28838183	28838307	28838262	28838262	Frame_Shift_Del	G	-	p.E232fs
LIHC	TCGA-G3-A3CJ-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847515	28847515	Frame_Shift_Del	G	-	p.G1054fs
LIHC	TCGA-G3-A3CJ-01	ATXN2L	ENST00000395547.2	chr16	28847443:28847497:28847646:28847811:28848048:28848240,	28847647	28847811	28847675	28847675	Frame_Shift_Del	C	-	p.R1058fs
LIHC	TCGA-G3-A3CJ-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847675	28847675	Frame_Shift_Del	C	-	p.R1058fs
LIHC	TCGA-G3-A3CJ-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28877808	28877808	Frame_Shift_Del	C	-	p.G131fs
LIHC	TCGA-G3-A3CJ-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000545570.1,ENST00000395532.4,ENST00000359285.5,ENST00000322610.8	chr16	28880597:28880704:28883100:28883304:28883510:28883722,	28883101	28883304	28883256	28883256	Frame_Shift_Del	C	-	p.P489fs
LIHC	TCGA-G3-A3CJ-01	RABEP2	ENST00000358201.4,ENST00000544477.1,ENST00000357573.6	chr16	28917339:28917517:28919929:28920085:28922208:28922307,	28919930	28920085	28919983	28919983	Frame_Shift_Del	G	-	p.Q398fs
LIHC	TCGA-G3-A3CJ-01	SPNS1	ENST00000566059.1,ENST00000323081.8,ENST00000565975.1,ENST00000311008.11	chr16	28992790:28992936:28993676:28993866:28994177:28994243,28993221:28993377:28993676:28993866:28994177:28994243,	28993677	28993866	28993769	28993769	Frame_Shift_Del	G	-	p.R353fs
LIHC	TCGA-G3-A3CJ-01	QPRT	ENST00000395384.4	chr16	29690502:29690531:29705984:29706520:29708316:29708448,	29705985	29706520	29706156	29706156	Frame_Shift_Del	C	-	p.A62fs
LIHC	TCGA-G3-A3CJ-01	CDIPT	ENST00000569956.1,ENST00000563415.1,ENST00000570016.1	chr16	29872426:29872580:29873906:29874041:29874135:29874186,	29873907	29874041	29873985	29873985	Frame_Shift_Del	G	-	p.L34fs
LIHC	TCGA-G3-A3CJ-01	TMEM219	ENST00000575829.2,ENST00000279396.6,ENST00000602948.1,ENST00000566848.1,ENST00000414689.2,ENST00000561899.2,ENST00000570255.1	chr16	29974492:29974629:29974720:29974910:29979345:29979438,	29974721	29974910	29974744	29974744	Frame_Shift_Del	T	-	p.S63fs
LIHC	TCGA-G3-A3CJ-01	HIRIP3	ENST00000279392.3	chr16	30004969:30005129:30005226:30006164:30006423:30006538,	30005227	30006164	30005325	30005325	Frame_Shift_Del	C	-	p.E381fs
LIHC	TCGA-G3-A3CJ-01	HIRIP3	ENST00000279392.3	chr16	30004969:30005129:30005226:30006164:30006423:30006538,	30005227	30006164	30005548	30005548	Frame_Shift_Del	C	-	p.G306fs
LIHC	TCGA-G3-A3CJ-01	INO80E	ENST00000563197.1	chr16	30012314:30012361:30012734:30012851:30016688:30016756,30012328:30012361:30012734:30012851:30016541:30016644,	30012735	30012851	30012752	30012752	Frame_Shift_Del	C	-	p.Y138fs
LIHC	TCGA-G3-A3CJ-01	INO80E	ENST00000567065.1	chr16	30012291:30012361:30012532:30012851:30015888:30015978,30012328:30012361:30012532:30012851:30016541:30016644,	30012533	30012851	30012752	30012752	Frame_Shift_Del	C	-	p.Y138fs
LIHC	TCGA-G3-A3CJ-01	INO80E	ENST00000569957.1	chr16	30012328:30012361:30012532:30015978:30016541:30016644,	30012533	30015978	30012752	30012752	Frame_Shift_Del	C	-	p.Y138fs
LIHC	TCGA-G3-A3CJ-01	TBX6	ENST00000395224.2,ENST00000279386.2	chr16	30097355:30097759:30097832:30098016:30098098:30098172,	30097833	30098016	30098000	30098000	Frame_Shift_Del	G	-	p.P310fs
LIHC	TCGA-G3-A3CJ-01	GDPD3	ENST00000566613.1	chr16	30116164:30116330:30119693:30119753:30122708:30122711,	30119694	30119753	30119696	30119696	Frame_Shift_Del	T	-	p.K255fs
LIHC	TCGA-G3-A3CJ-01	CD2BP2	ENST00000569466.1,ENST00000305596.3	chr16	30365221:30365379:30365504:30365643:30365924:30366028,	30365505	30365643	30365545	30365545	Frame_Shift_Del	C	-	p.G59fs
LIHC	TCGA-G3-A3CJ-01	ITGAL	ENST00000454514.2,ENST00000562857.1,ENST00000565864.1,ENST00000356798.6,ENST00000569725.1	chr16	30486626:30486721:30486833:30486901:30490411:30490495,	30486834	30486901	30486890	30486890	Frame_Shift_Del	G	-	p.G106fs
LIHC	TCGA-G3-A3CJ-01	ITGAL	ENST00000568012.1,ENST00000358164.5,ENST00000356798.6	chr16	30505532:30505684:30506033:30506171:30507417:30507522,	30506034	30506171	30506127	30506127	Frame_Shift_Del	G	-	p.G487fs
LIHC	TCGA-G3-A3CJ-01	FBRS	ENST00000356166.6	chr16	30673879:30674180:30675535:30675837:30676035:30676241,	30675536	30675837	30675657	30675657	Frame_Shift_Del	C	-	p.P394fs
LIHC	TCGA-G3-A3CJ-01	SRCAP	ENST00000483083.1,ENST00000395059.2,ENST00000262518.4	chr16	30731482:30731652:30732033:30732299:30732509:30732797,	30732034	30732299	30732218	30732218	Frame_Shift_Del	C	-	p.P1059fs
LIHC	TCGA-G3-A3CJ-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30735197	30735197	Frame_Shift_Del	C	-	p.V1484fs
LIHC	TCGA-G3-A3CJ-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30735314	30735314	Frame_Shift_Del	C	-	p.H1523fs
LIHC	TCGA-G3-A3CJ-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30735354	30735354	Frame_Shift_Del	T	-	p.L1537fs
LIHC	TCGA-G3-A3CJ-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30735857	30735857	Frame_Shift_Del	G	-	p.T1704fs
LIHC	TCGA-G3-A3CJ-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736261	30736261	Frame_Shift_Del	C	-	p.S1839fs
LIHC	TCGA-G3-A3CJ-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736314	30736314	Frame_Shift_Del	C	-	p.P1858fs
LIHC	TCGA-G3-A3CJ-01	PHKG2	ENST00000563913.1,ENST00000563588.1,ENST00000424889.3	chr16	30767502:30767593:30767687:30767841:30767910:30768036,	30767688	30767841	30767698	30767698	Frame_Shift_Del	G	-	p.G220fs
LIHC	TCGA-G3-A3CJ-01	PHKG2	ENST00000328273.7	chr16	30767502:30767593:30767675:30767841:30767910:30768036,	30767676	30767841	30767698	30767698	Frame_Shift_Del	G	-	p.G220fs
LIHC	TCGA-G3-A3CJ-01	KAT8	ENST00000219797.4,ENST00000448516.2,ENST00000538768.2,ENST00000543774.2	chr16	31138355:31138409:31138509:31138674:31139370:31139460,	31138510	31138674	31138530	31138530	Frame_Shift_Del	G	-	p.V179fs
LIHC	TCGA-G3-A3CJ-01	PRSS8	ENST00000317508.6	chr16	31144199:31144274:31144546:31144709:31146474:31146492,	31144547	31144709	31144642	31144642	Frame_Shift_Del	G	-	p.P57fs
LIHC	TCGA-G3-A3CJ-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
LIHC	TCGA-G3-A3CJ-01	FUS	ENST00000487509.2,ENST00000380244.3,ENST00000568685.1,ENST00000254108.7,ENST00000566605.1	chr16	31195181:31195323:31195529:31195717:31196259:31196500,	31195530	31195717	31195576	31195576	Frame_Shift_Del	G	-	p.G128fs
LIHC	TCGA-G3-A3CJ-01	ITGAD	ENST00000389202.2	chr16	31435422:31435524:31435787:31435898:31437335:31437826,	31435788	31435898	31435853	31435853	Frame_Shift_Del	G	-	p.V1109fs
LIHC	TCGA-G3-A3CJ-01	VPS35	ENST00000568784.2,ENST00000562420.1,ENST00000299138.7	chr16	46696154:46696394:46696894:46697074:46702841:46702964,	46696895	46697074	46697038	46697038	Frame_Shift_Del	A	-	p.S562fs
LIHC	TCGA-G3-A3CJ-01	VPS35	ENST00000568784.2,ENST00000299138.7,ENST00000569950.1	chr16	46711226:46711310:46712854:46713068:46714582:46714765,	46712855	46713068	46712950	46712950	Frame_Shift_Del	T	-	p.R209fs
LIHC	TCGA-G3-A3CJ-01	GPT2	ENST00000440783.2,ENST00000562801.1,ENST00000340124.4	chr16	46956153:46956328:46958300:46958456:46960836:46960949,	46958301	46958456	46958396	46958396	Frame_Shift_Del	G	-	p.Q336fs
LIHC	TCGA-G3-A3CJ-01	NETO2	ENST00000303155.5,ENST00000562435.1	chr16	47117524:47117712:47120136:47120250:47143393:47143622,	47120137	47120250	47120172	47120172	Frame_Shift_Del	T	-	p.N321fs
LIHC	TCGA-G3-A3CJ-01	PHKB	ENST00000323584.5,ENST00000299167.8,ENST00000566037.2,ENST00000563376.1,ENST00000455779.1,ENST00000567402.1,ENST00000566044.1	chr16	47531309:47531399:47533666:47533805:47536901:47537001,	47533667	47533805	47533784	47533784	Frame_Shift_Del	G	-	p.W88fs
LIHC	TCGA-G3-A3CJ-01	ABCC12	ENST00000534418.1,ENST00000448542.1,ENST00000532494.1,ENST00000529504.1,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48125030:48125120:48130656:48130843:48134782:48134920,	48130657	48130843	48130709	48130709	Frame_Shift_Del	A	-	p.F1048fs
LIHC	TCGA-G3-A3CJ-01	ABCC12	ENST00000534418.1,ENST00000532494.1,ENST00000311303.3,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48134782:48134920:48138052:48138279:48139049:48139247,	48138053	48138279	48138216	48138216	Frame_Shift_Del	A	-	p.S913fs
LIHC	TCGA-G3-A3CJ-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000569991.1,ENST00000394747.1,ENST00000567385.1,ENST00000394748.1	chr16	48258258:48258340:48261716:48261875:48264347:48264484,	48261717	48261875	48261726	48261726	Frame_Shift_Del	T	-	p.N129fs
LIHC	TCGA-G3-A3CJ-01	LONP2	ENST00000535754.1,ENST00000416006.3	chr16	48286041:48286276:48292528:48292651:48295334:48295498,	48292529	48292651	48292590	48292590	Frame_Shift_Del	A	-	p.Q221fs
LIHC	TCGA-G3-A3CJ-01	LONP2	ENST00000285737.4,ENST00000535754.1,ENST00000416006.3	chr16	48292528:48292651:48295334:48295498:48296688:48296783,	48295335	48295498	48295434	48295434	Frame_Shift_Del	A	-	p.K276fs
LIHC	TCGA-G3-A3CJ-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000398510.3	chr16	53326744:53326964:53330867:53331070:53337631:53338537,	53330868	53331070	53331008	53331008	Frame_Shift_Del	A	-	p.E1884fs
LIHC	TCGA-G3-A3CJ-01	CHD9	ENST00000447540.1	chr16	53330867:53331070:53337631:53338537:53340148:53340309,53330867:53331070:53337631:53338537:53340145:53340309,	53337632	53338537	53337650	53337650	Frame_Shift_Del	T	-	p.I1911fs
LIHC	TCGA-G3-A3CJ-01	CHD9	ENST00000447540.1	chr16	53330867:53331070:53337631:53338537:53340148:53340309,53330867:53331070:53337631:53338537:53340145:53340309,	53337632	53338537	53337956	53337956	Frame_Shift_Del	C	-	p.T2013fs
LIHC	TCGA-G3-A3CJ-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000398510.3,ENST00000564600.2	chr16	53348417:53348428:53348734:53348956:53352123:53352252,	53348735	53348956	53348763	53348763	Frame_Shift_Del	T	-	p.I2448fs
LIHC	TCGA-G3-A3CJ-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53500969:53501081:53503827:53504097:53504294:53504575,	53503828	53504097	53503938	53503938	Frame_Shift_Del	G	-	p.G696fs
LIHC	TCGA-G3-A3CJ-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53500969:53501081:53503827:53504097:53504294:53504575,	53503828	53504097	53503956	53503956	Frame_Shift_Del	C	-	p.P702fs
LIHC	TCGA-G3-A3CJ-01	RBL2	ENST00000379935.4,ENST00000262133.6	chr16	53500969:53501081:53503827:53504097:53504294:53504575,	53503828	53504097	53503992	53503992	Frame_Shift_Del	G	-	p.G714fs
LIHC	TCGA-G3-A3CJ-01	AKTIP	ENST00000300245.4,ENST00000570004.1,ENST00000394657.7	chr16	53526604:53526665:53528049:53528157:53528250:53528349,	53528050	53528157	53528072	53528072	Frame_Shift_Del	T	-	p.I230fs
LIHC	TCGA-G3-A3CJ-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53692325:53692376:53692683:53692790:53698781:53698921,	53692684	53692790	53692705	53692705	Frame_Shift_Del	T	-	p.K443fs
LIHC	TCGA-G3-A3CJ-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53692325:53692376:53692683:53692790:53698781:53698921,	53692684	53692790	53692730	53692730	Frame_Shift_Del	T	-	p.K435fs
LIHC	TCGA-G3-A3CJ-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53692325:53692376:53692683:53692790:53698781:53698921,	53692684	53692790	53692777	53692777	Frame_Shift_Del	T	-	p.K419fs
LIHC	TCGA-G3-A3CJ-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000568653.3,ENST00000563746.1,ENST00000566096.1	chr16	53730124:53730207:53734550:53734642:53737714:53737756,	53734551	53734642	53734591	53734591	Frame_Shift_Del	T	-	p.K15fs
LIHC	TCGA-G3-A3CJ-01	RPGRIP1L	ENST00000562230.1	chr16	53730124:53730207:53734550:53734638:53737714:53737756,	53734551	53734638	53734591	53734591	Frame_Shift_Del	T	-	p.K15fs
LIHC	TCGA-G3-A3CJ-01	SLC6A2	ENST00000219833.8,ENST00000566163.1,ENST00000561820.1,ENST00000568943.1,ENST00000567238.1,ENST00000414754.3,ENST00000379906.2	chr16	55729189:55729314:55730136:55730249:55731808:55731937,	55730137	55730249	55730211	55730211	Frame_Shift_Del	T	-	p.F409fs
LIHC	TCGA-G3-A3CJ-01	CES1	ENST00000360526.3,ENST00000361503.4	chr16	55844841:55844919:55846814:55846955:55850835:55850850,55844838:55844922:55846814:55846955:55850835:55850850,	55846815	55846955	55846903	55846903	Frame_Shift_Del	G	-	p.P332fs
LIHC	TCGA-G3-A3CJ-01	OGFOD1	ENST00000561646.1,ENST00000336111.5,ENST00000566157.1	chr16	56500063:56500180:56500787:56500879:56501076:56501110,	56500788	56500879	56500835	56500835	Frame_Shift_Del	A	-	p.N205fs
LIHC	TCGA-G3-A3CJ-01	OGFOD1	ENST00000561646.1,ENST00000336111.5,ENST00000566157.1	chr16	56500063:56500180:56500787:56500879:56501076:56501110,	56500788	56500879	56500845	56500845	Frame_Shift_Del	T	-	p.V208fs
LIHC	TCGA-G3-A3CJ-01	NUP93	ENST00000564887.1,ENST00000563486.1,ENST00000542526.1,ENST00000308159.5,ENST00000569842.1	chr16	56871536:56871638:56872863:56872981:56873432:56873516,	56872864	56872981	56872937	56872937	Frame_Shift_Del	T	-	p.F576fs
LIHC	TCGA-G3-A3CJ-01	HERPUD1	ENST00000344114.4,ENST00000300302.5	chr16	56969153:56969224:56969315:56969387:56970598:56970729,	56969316	56969387	56969317	56969317	Frame_Shift_Del	A	-	p.E77fs
LIHC	TCGA-G3-A3CJ-01	HERPUD1	ENST00000570273.1,ENST00000439977.2,ENST00000565966.1,ENST00000569569.1,ENST00000563343.1	chr16	56969153:56969224:56969312:56969387:56970598:56970729,	56969313	56969387	56969317	56969317	Frame_Shift_Del	A	-	p.E77fs
LIHC	TCGA-G3-A3CJ-01	NLRC5	ENST00000262510.6,ENST00000540182.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57108511:57108595:57110730:57110814:57111207:57111281,	57110731	57110814	57110735	57110735	Frame_Shift_Del	A	-	p.N1586fs
LIHC	TCGA-G3-A3CJ-01	NLRC5	ENST00000534927.1,ENST00000262510.6,ENST00000540182.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57111207:57111291:57111630:57111714:57111854:57111932,	57111631	57111714	57111659	57111659	Frame_Shift_Del	G	-	p.G1651fs
LIHC	TCGA-G3-A3CJ-01	CPNE2	ENST00000537605.1	chr16	57126518:57126702:57144619:57144834:57147199:57147264,	57144620	57144834	57144690	57144690	Frame_Shift_Del	G	-	p.A12fs
LIHC	TCGA-G3-A3CJ-01	CPNE2	ENST00000535318.2,ENST00000566910.1,ENST00000290776.8,ENST00000537605.1,ENST00000565874.1	chr16	57168686:57168738:57171060:57171194:57179996:57180233,	57171061	57171194	57171133	57171133	Frame_Shift_Del	C	-	p.S414fs
LIHC	TCGA-G3-A3CJ-01	CNGB1	ENST00000564448.1,ENST00000251102.8	chr16	57946833:57946898:57949152:57949239:57950032:57950083,	57949153	57949239	57949195	57949195	Frame_Shift_Del	T	-	p.K748fs
LIHC	TCGA-G3-A3CJ-01	SETD6	ENST00000310682.2,ENST00000418480.1,ENST00000427443.1,ENST00000422445.1,ENST00000219315.4	chr16	58550105:58550247:58550381:58550576:58550711:58550832,	58550382	58550576	58550502	58550502	Frame_Shift_Del	C	-	p.H175fs
LIHC	TCGA-G3-A3CJ-01	SETD6	ENST00000427443.1	chr16	58550516:58550576:58550711:58550832:58551954:58552135,58550516:58550576:58550711:58550832:58551923:58552135,	58550712	58550832	58550759	58550759	Frame_Shift_Del	C	-	p.S171fs
LIHC	TCGA-G3-A3CJ-01	CNOT1	ENST00000567188.1,ENST00000245138.4,ENST00000317147.5,ENST00000569240.1	chr16	58566135:58566299:58568050:58568299:58570892:58571124,	58568051	58568299	58568156	58568156	Frame_Shift_Del	G	-	p.A1930fs
LIHC	TCGA-G3-A3CJ-01	SLC38A7	ENST00000219320.4,ENST00000564010.1,ENST00000566598.1,ENST00000570101.1,ENST00000565785.1,ENST00000564100.1,ENST00000562149.1	chr16	58711229:58711328:58712236:58712378:58712599:58712667,	58712237	58712378	58712346	58712346	Frame_Shift_Del	C	-	p.A168fs
LIHC	TCGA-G3-A3CJ-01	GOT2	ENST00000564400.1,ENST00000245206.5,ENST00000496461.1	chr16	58753099:58753159:58756053:58756182:58757649:58757806,	58756054	58756182	58756113	58756113	Frame_Shift_Del	A	-	p.C106fs
LIHC	TCGA-G3-A3CJ-01	GOT2	ENST00000564400.1,ENST00000245206.5,ENST00000496461.1	chr16	58753099:58753159:58756053:58756182:58757649:58757806,	58756054	58756182	58756127	58756127	Frame_Shift_Del	C	-	p.G101fs
LIHC	TCGA-G3-A3CJ-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000577730.1	chr16	61747744:61747862:61760997:61761119:61823249:61823386,	61760998	61761119	61761007	61761007	Frame_Shift_Del	T	-	p.K509fs
LIHC	TCGA-G3-A3CJ-01	CDH8	ENST00000299345.6,ENST00000577390.1,ENST00000583382.1,ENST00000577730.1,ENST00000585315.1,ENST00000584337.1	chr16	61854829:61855017:61858915:61859083:61891022:61891142,	61858916	61859083	61858926	61858926	Frame_Shift_Del	T	-	p.K275fs
LIHC	TCGA-G3-A3CJ-01	CDH11	ENST00000566827.1	chr16	65026817:65026937:65032464:65032759:65087706:65087831,	65032465	65032759	65032521	65032521	Frame_Shift_Del	G	-	p.P157fs
LIHC	TCGA-G3-A3CJ-01	C16orf70	ENST00000569600.1	chr16	67143865:67143892:67144021:67144142:67154014:67154097,	67144022	67144142	67144114	67144114	Frame_Shift_Del	G	-	p.L12fs
LIHC	TCGA-G3-A3CJ-01	C16orf70	ENST00000569600.1	chr16	67143865:67143892:67144021:67144142:67154014:67154097,	67144022	67144142	67144128	67144128	Frame_Shift_Del	G	-	p.W17fs
LIHC	TCGA-G3-A3CJ-01	SLC9A5	ENST00000299798.11	chr16	67289295:67289374:67289655:67289833:67290371:67290381,	67289656	67289833	67289760	67289760	Frame_Shift_Del	C	-	p.P280fs
LIHC	TCGA-G3-A3CJ-01	SLC9A5	ENST00000563723.1,ENST00000564704.1	chr16	67288937:67289087:67289295:67289833:67290371:67290381,	67289296	67289833	67289760	67289760	Frame_Shift_Del	C	-	p.P280fs
LIHC	TCGA-G3-A3CJ-01	LRRC36	ENST00000290940.7,ENST00000567723.1	chr16	67399206:67399258:67400919:67401360:67404846:67405145,67397492:67397617:67400919:67401360:67404846:67405145,	67400920	67401360	67401031	67401031	Frame_Shift_Del	A	-	p.E289fs
LIHC	TCGA-G3-A3CJ-01	ACD	ENST00000602860.1,ENST00000393919.4,ENST00000602320.1,ENST00000219251.8,ENST00000602850.1	chr16	67691888:67691931:67692457:67692544:67692622:67692719,67692042:67692265:67692457:67692544:67692622:67692719,	67692458	67692544	67692541	67692541	Frame_Shift_Del	G	-	p.P332fs
LIHC	TCGA-G3-A3CJ-01	ENKD1	ENST00000243878.4,ENST00000602415.1,ENST00000602942.1	chr16	67697322:67697459:67697559:67697723:67697839:67697965,	67697560	67697723	67697663	67697663	Frame_Shift_Del	G	-	p.R215fs
LIHC	TCGA-G3-A3CJ-01	RANBP10	ENST00000602887.1,ENST00000536251.1,ENST00000602506.1,ENST00000602677.1,ENST00000448631.2,ENST00000602525.1	chr16	67805936:67805989:67839330:67839442:67840204:67840421,	67839331	67839442	67839430	67839430	Frame_Shift_Del	T	-	p.N83fs
LIHC	TCGA-G3-A3CJ-01	TSNAXIP1	ENST00000563363.1	chr16	67848204:67848304:67855001:67855128:67858485:67858674,67848204:67848304:67855001:67855128:67859039:67859165,67848204:67848304:67855001:67855128:67857528:67857622,	67855002	67855128	67855017	67855017	Frame_Shift_Del	C	-	p.H38fs
LIHC	TCGA-G3-A3CJ-01	CENPT	ENST00000564538.1,ENST00000562513.2	chr16	67865488:67865515:67865656:67865743:67865914:67866011,	67865657	67865743	67865694	67865694	Frame_Shift_Del	A	-	p.F162fs
LIHC	TCGA-G3-A3CJ-01	CENPT	ENST00000564817.1,ENST00000563885.1,ENST00000445712.2,ENST00000565713.1,ENST00000562947.1,ENST00000219172.3,ENST00000562787.1,ENST00000565157.1,ENST00000569862.1,ENST00000440851.2,ENST00000562462.1	chr16	67865488:67865515:67865656:67865793:67865914:67866011,	67865657	67865793	67865694	67865694	Frame_Shift_Del	A	-	p.F162fs
LIHC	TCGA-G3-A3CJ-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67985725:67985940:67986086:67986328:67988545:67988676,	67986087	67986328	67986120	67986120	Frame_Shift_Del	C	-	p.G297fs
LIHC	TCGA-G3-A3CJ-01	DPEP2	ENST00000575203.1,ENST00000572888.1,ENST00000572624.1,ENST00000393847.1,ENST00000412757.2	chr16	68026075:68026096:68026412:68026539:68026852:68027160,	68026413	68026539	68026517	68026517	Frame_Shift_Del	G	-	p.L96fs
LIHC	TCGA-G3-A3CJ-01	DPEP2	ENST00000268795.5	chr16	68026075:68026096:68026852:68027160:68034350:68034467,	68026853	68027160	68026969	68026969	Frame_Shift_Del	G	-	p.P49fs
LIHC	TCGA-G3-A3CJ-01	NFATC3	ENST00000379165.4,ENST00000575270.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4	chr16	68119560:68119687:68155889:68157024:68160350:68160513,	68155890	68157024	68156004	68156004	Frame_Shift_Del	T	-	p.V73fs
LIHC	TCGA-G3-A3CJ-01	NFATC3	ENST00000379165.4,ENST00000575270.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4	chr16	68119560:68119687:68155889:68157024:68160350:68160513,	68155890	68157024	68156685	68156685	Frame_Shift_Del	C	-	p.S300fs
LIHC	TCGA-G3-A3CJ-01	NFATC3	ENST00000563796.1,ENST00000535127.2,ENST00000379165.4,ENST00000553077.1,ENST00000566301.1,ENST00000563319.1,ENST00000569766.1,ENST00000562926.1,ENST00000570212.1,ENST00000567152.1,ENST00000575270.1,ENST00000563288.1,ENST00000346183.3,ENST00000349223.5,ENST00000329524.4,ENST00000549350.1	chr16	68119560:68119687:68160350:68160513:68191771:68191971,68156932:68157024:68160350:68160513:68191771:68191971,	68160351	68160513	68160493	68160493	Frame_Shift_Del	G	-	p.G462fs
LIHC	TCGA-G3-A3CJ-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68265198:68265279:68265384:68265597:68265704:68266006,	68265385	68265597	68265438	68265438	Frame_Shift_Del	C	-	p.E487fs
LIHC	TCGA-G3-A3CJ-01	SLC7A6	ENST00000219343.6,ENST00000379152.3	chr16	68300504:68300624:68308593:68309152:68321648:68321774,	68308594	68309152	68308880	68308880	Frame_Shift_Del	G	-	p.W84fs
LIHC	TCGA-G3-A3CJ-01	SLC7A6	ENST00000219343.6,ENST00000379152.3	chr16	68300504:68300624:68308593:68309152:68321648:68321774,	68308594	68309152	68309110	68309110	Frame_Shift_Del	C	-	p.P162fs
LIHC	TCGA-G3-A3CJ-01	PRMT7	ENST00000562050.1,ENST00000566341.1	chr16	68355328:68355365:68358585:68358735:68362968:68363062,68349881:68349977:68358585:68358735:68362968:68363062,	68358586	68358735	68358656	68358656	Frame_Shift_Del	T	-	p.V68fs
LIHC	TCGA-G3-A3CJ-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000569036.2,ENST00000429102.2	chr16	68713701:68713877:68714870:68714999:68716204:68716295,	68714871	68714999	68714990	68714990	Frame_Shift_Del	C	-	p.D329fs
LIHC	TCGA-G3-A3CJ-01	CDH3	ENST00000264012.4,ENST00000581171.1,ENST00000542274.1,ENST00000429102.2	chr16	68719107:68719253:68721414:68721639:68725622:68725829,	68721415	68721639	68721442	68721442	Frame_Shift_Del	C	-	p.T533fs
LIHC	TCGA-G3-A3CJ-01	CDH1	ENST00000566510.1,ENST00000566612.1,ENST00000422392.2	chr16	68771254:68771366:68772199:68772314:68835572:68835796,	68772200	68772314	68772275	68772275	Frame_Shift_Del	C	-	p.P42fs
LIHC	TCGA-G3-A3CJ-01	CDH1	ENST00000562836.1,ENST00000261769.5,ENST00000566612.1,ENST00000422392.2	chr16	68842595:68842751:68844099:68844244:68845586:68845762,	68844100	68844244	68844216	68844216	Frame_Shift_Del	G	-	p.K268fs
LIHC	TCGA-G3-A3CJ-01	TANGO6	ENST00000568361.1,ENST00000562000.1,ENST00000261778.1	chr16	69056730:69056882:69074210:69074324:69117387:69117418,	69074211	69074324	69074313	69074313	Frame_Shift_Del	A	-	p.K1033fs
LIHC	TCGA-G3-A3CJ-01	PDPR	ENST00000398122.3,ENST00000288050.4,ENST00000568530.1,ENST00000565186.1	chr16	70162861:70163025:70164325:70164447:70166053:70166203,70162861:70163025:70164325:70164447:70165204:70165322,	70164326	70164447	70164370	70164370	Frame_Shift_Del	A	-	p.K219fs
LIHC	TCGA-G3-A3CJ-01	PDPR	ENST00000398122.3,ENST00000562100.1,ENST00000561920.1,ENST00000288050.4,ENST00000568530.1,ENST00000565186.1	chr16	70166053:70166203:70170096:70170289:70172801:70172926,	70170097	70170289	70170265	70170265	Frame_Shift_Del	T	-	p.L389fs
LIHC	TCGA-G3-A3CJ-01	CLEC18C	ENST00000314151.8,ENST00000536907.2,ENST00000569347.2,ENST00000564976.1,ENST00000569201.2,ENST00000541793.2	chr16	70208849:70208941:70211143:70211383:70215752:70215850,	70211144	70211383	70211163	70211163	Frame_Shift_Del	C	-	p.A79fs
LIHC	TCGA-G3-A3CJ-01	AARS	ENST00000261772.8,ENST00000565361.2	chr16	70289637:70289739:70292882:70293089:70294946:70295060,70291935:70292120:70292882:70293089:70294946:70295060,	70292883	70293089	70293086	70293086	Frame_Shift_Del	G	-	p.R599fs
LIHC	TCGA-G3-A3CJ-01	FUK	ENST00000464499.1	chr16	70512453:70512553:70512699:70513306:70513481:70513584,	70512700	70513306	70513191	70513191	Frame_Shift_Del	C	-	p.A1013fs
LIHC	TCGA-G3-A3CJ-01	FUK	ENST00000378912.2,ENST00000571514.1,ENST00000288078.6,ENST00000498702.1	chr16	70512453:70512553:70513082:70513306:70513481:70513584,	70513083	70513306	70513191	70513191	Frame_Shift_Del	C	-	p.A1013fs
LIHC	TCGA-G3-A3CJ-01	SF3B3	ENST00000302516.5	chr16	70564647:70564820:70566381:70566523:70569210:70569323,	70566382	70566523	70566477	70566477	Frame_Shift_Del	A	-	p.R222fs
LIHC	TCGA-G3-A3CJ-01	SF3B3	ENST00000302516.5,ENST00000563739.1	chr16	70598967:70599173:70599270:70599427:70601313:70601439,	70599271	70599427	70599401	70599401	Frame_Shift_Del	G	-	p.G934fs
LIHC	TCGA-G3-A3CJ-01	MTSS1L	ENST00000338779.6,ENST00000562883.2,ENST00000576338.1	chr16	70710851:70710881:70711694:70711802:70712154:70712242,	70711695	70711802	70711742	70711742	Frame_Shift_Del	C	-	p.V230fs
LIHC	TCGA-G3-A3CJ-01	HYDIN	ENST00000393567.2	chr16	71022295:71022415:71025220:71025299:71025972:71026113,	71025221	71025299	71025260	71025260	Frame_Shift_Del	T	-	p.K1275fs
LIHC	TCGA-G3-A3CJ-01	HYDIN	ENST00000393552.2	chr16	71025220:71025299:71025972:71026113:71052031:71052345,71022295:71022415:71025972:71026113:71052031:71052345,	71025973	71026113	71025999	71025999	Frame_Shift_Del	G	-	p.P1253fs
LIHC	TCGA-G3-A3CJ-01	PHLPP2	ENST00000567016.1,ENST00000393524.2,ENST00000568954.1,ENST00000356272.3,ENST00000360429.3,ENST00000538126.1	chr16	71724421:71724612:71736500:71736634:71748414:71748704,	71736501	71736634	71736563	71736563	Frame_Shift_Del	G	-	p.P119fs
LIHC	TCGA-G3-A3CJ-01	AP1G1	ENST00000423132.2,ENST00000565009.1,ENST00000450149.2,ENST00000393512.3	chr16	71808439:71808495:71823181:71823385:71841917:71842053,71808439:71808495:71823181:71823385:71842665:71842716,	71823182	71823385	71823227	71823227	Frame_Shift_Del	T	-	p.K52fs
LIHC	TCGA-G3-A3CJ-01	ZNF821	ENST00000563827.1	chr16	71895681:71895845:71898040:71898145:71901814:71901940,71894500:71894575:71898040:71898145:71901795:71901940,	71898041	71898145	71898119	71898119	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-G3-A3CJ-01	IST1	ENST00000329908.8	chr16	71956529:71956583:71957190:71957283:71958671:71958720,71956529:71956583:71957190:71957283:71958675:71958720,	71957191	71957283	71957266	71957266	Frame_Shift_Del	C	-	p.P280fs
LIHC	TCGA-G3-A3CJ-01	IST1	ENST00000456820.2	chr16	71956529:71956583:71957190:71957287:71961516:71962877,	71957191	71957287	71957266	71957266	Frame_Shift_Del	C	-	p.P280fs
LIHC	TCGA-G3-A3CJ-01	DHX38	ENST00000564307.1,ENST00000268482.3	chr16	72130825:72130908:72131575:72131680:72132543:72132691,	72131576	72131680	72131653	72131653	Frame_Shift_Del	C	-	p.P197fs
LIHC	TCGA-G3-A3CJ-01	DHX38	ENST00000268482.3,ENST00000569935.1	chr16	72136999:72137110:72137500:72137687:72137844:72138030,	72137501	72137687	72137534	72137534	Frame_Shift_Del	G	-	p.T557fs
LIHC	TCGA-G3-A3CJ-01	PMFBP1	ENST00000237353.10,ENST00000355636.6,ENST00000537465.1,ENST00000379073.5	chr16	72157444:72157548:72158665:72158833:72159136:72159304,	72158666	72158833	72158738	72158738	Frame_Shift_Del	T	-	p.K844fs
LIHC	TCGA-G3-A3CJ-01	PMFBP1	ENST00000237353.10,ENST00000537465.1,ENST00000535461.1	chr16	72184672:72184728:72188109:72188358:72198662:72198815,	72188110	72188358	72188257	72188257	Frame_Shift_Del	T	-	p.K89fs
LIHC	TCGA-G3-A3CJ-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829834	72829834	Frame_Shift_Del	A	-	p.F2249fs
LIHC	TCGA-G3-A3CJ-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829862	72829862	Frame_Shift_Del	C	-	p.G2240fs
LIHC	TCGA-G3-A3CJ-01	CLEC18B	ENST00000339953.5	chr16	74444433:74444530:74444802:74444932:74445566:74445673,	74444803	74444932	74444920	74444920	Frame_Shift_Del	C	-	p.V333fs
LIHC	TCGA-G3-A3CJ-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000447066.2	chr16	74491771:74491892:74493579:74493687:74495991:74496093,	74493580	74493687	74493597	74493597	Frame_Shift_Del	T	-	p.T1043fs
LIHC	TCGA-G3-A3CJ-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000562090.1,ENST00000447066.2	chr16	74524898:74525113:74526854:74527038:74528657:74528729,	74526855	74527038	74527010	74527010	Frame_Shift_Del	T	-	p.K360fs
LIHC	TCGA-G3-A3CJ-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000562090.1,ENST00000447066.2	chr16	74528657:74528729:74530338:74530542:74537428:74537644,	74530339	74530542	74530468	74530468	Frame_Shift_Del	G	-	p.P283fs
LIHC	TCGA-G3-A3CJ-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000565474.1,ENST00000447066.2	chr16	74530526:74530542:74537428:74537644:74542736:74542823,	74537429	74537644	74537612	74537612	Frame_Shift_Del	T	-	p.K197fs
LIHC	TCGA-G3-A3CJ-01	MLKL	ENST00000571303.1,ENST00000308807.7	chr16	74712796:74712878:74716548:74716684:74719383:74719481,	74716549	74716684	74716568	74716568	Frame_Shift_Del	C	-	p.A314fs
LIHC	TCGA-G3-A3CJ-01	MLKL	ENST00000571303.1,ENST00000308807.7	chr16	74712796:74712878:74716548:74716684:74719383:74719481,	74716549	74716684	74716628	74716628	Frame_Shift_Del	C	-	p.E293fs
LIHC	TCGA-G3-A3CJ-01	CNTNAP4	ENST00000469589.1,ENST00000476707.1,ENST00000377504.4,ENST00000307431.8,ENST00000471618.1,ENST00000478060.1,ENST00000469667.1	chr16	76501248:76501420:76509835:76509942:76513315:76513435,	76509836	76509942	76509864	76509864	Frame_Shift_Del	G	-	p.G561fs
LIHC	TCGA-G3-A3CJ-01	NUDT7	ENST00000564085.1	chr16	77759327:77759481:77769724:77769883:77775478:77775721,77759327:77759481:77769724:77769883:77770546:77770640,	77769725	77769883	77769754	77769754	Frame_Shift_Del	C	-	p.F73fs
LIHC	TCGA-G3-A3CJ-01	NUDT7	ENST00000564085.1	chr16	77759327:77759481:77769724:77769883:77775478:77775721,77759327:77759481:77769724:77769883:77770546:77770640,	77769725	77769883	77769813	77769813	Frame_Shift_Del	C	-	p.A93fs
LIHC	TCGA-G3-A3CJ-01	WWOX	ENST00000408984.3,ENST00000539474.2,ENST00000355860.3,ENST00000402655.2,ENST00000406884.2,ENST00000561846.1,ENST00000562214.1,ENST00000565562.1	chr16	78133631:78133782:78142319:78142384:78143674:78143732,	78142320	78142384	78142362	78142362	Frame_Shift_Del	A	-	p.G50fs
LIHC	TCGA-G3-A3CJ-01	WWOX	ENST00000408984.3,ENST00000566780.1,ENST00000562639.1,ENST00000569332.1	chr16	78420756:78420845:78458766:78458952:78466384:78466500,	78458767	78458952	78458898	78458898	Frame_Shift_Del	T	-	p.V246fs
LIHC	TCGA-G3-A3CJ-01	CENPN	ENST00000393335.3,ENST00000305850.5,ENST00000439957.3	chr16	81053704:81053881:81056201:81056303:81058319:81058383,	81056202	81056303	81056284	81056284	Frame_Shift_Del	T	-	p.V205fs
LIHC	TCGA-G3-A3CJ-01	C16orf46	ENST00000299578.5	chr16	81095314:81095743:81097350:81097598:81099797:81099886,	81097351	81097598	81097455	81097455	Frame_Shift_Del	T	-	p.S36fs
LIHC	TCGA-G3-A3CJ-01	PKD1L2	ENST00000526632.1,ENST00000525539.1,ENST00000299598.7,ENST00000337114.4	chr16	81214755:81214876:81219096:81219304:81222485:81222603,	81219097	81219304	81219116	81219116	Frame_Shift_Del	C	-	p.E660fs
LIHC	TCGA-G3-A3CJ-01	CMIP	ENST00000537098.3,ENST00000539778.2,ENST00000398040.4,ENST00000566513.1	chr16	81703746:81703850:81705570:81705675:81711879:81712233,	81705571	81705675	81705601	81705601	Frame_Shift_Del	C	-	p.H320fs
LIHC	TCGA-G3-A3CJ-01	MBTPS1	ENST00000569770.1,ENST00000343411.3,ENST00000565863.1	chr16	84115356:84115513:84118587:84118739:84120962:84121065,	84118588	84118739	84118656	84118656	Frame_Shift_Del	C	-	p.G406fs
LIHC	TCGA-G3-A3CJ-01	DNAAF1	ENST00000567918.1,ENST00000563093.1,ENST00000334315.5,ENST00000378553.5,ENST00000570298.1	chr16	84182611:84182747:84183855:84183947:84188181:84188403,	84183856	84183947	84183944	84183944	Frame_Shift_Del	A	-	p.K117fs
LIHC	TCGA-G3-A3CJ-01	ADAD2	ENST00000315906.5,ENST00000564430.1,ENST00000268624.3	chr16	84229420:84229650:84229732:84229976:84230252:84230373,	84229733	84229976	84229923	84229923	Frame_Shift_Del	G	-	p.L573fs
LIHC	TCGA-G3-A3CJ-01	ATP2C2	ENST00000567892.1	chr16	84488423:84488590:84492725:84492794:84494259:84494407,	84492726	84492794	84492752	84492752	Frame_Shift_Del	T	-	p.I725fs
LIHC	TCGA-G3-A3CJ-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778688	84778688	Frame_Shift_Del	C	-	p.P202fs
LIHC	TCGA-G3-A3CJ-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778720	84778720	Frame_Shift_Del	C	-	p.S211fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC7	ENST00000344861.5,ENST00000313732.4,ENST00000564466.1,ENST00000566909.1	chr16	85011529:85011611:85012794:85012891:85015475:85015600,	85012795	85012891	85012807	85012807	Frame_Shift_Del	A	-	p.F175fs
LIHC	TCGA-G3-A3CJ-01	GSE1	ENST00000469381.1,ENST00000412692.1	chr16	85696991:85697220:85699581:85699953:85701745:85702030,	85699582	85699953	85699822	85699822	Frame_Shift_Del	T	-	p.I1000fs
LIHC	TCGA-G3-A3CJ-01	C16orf74	ENST00000602675.1	chr16	85741259:85741672:85743769:85743891:85768795:85768841,	85743770	85743891	85743813	85743813	Frame_Shift_Del	G	-	p.P31fs
LIHC	TCGA-G3-A3CJ-01	C16orf74	ENST00000602719.1	chr16	85741259:85741672:85743769:85743913:85768795:85768841,85723775:85724383:85743769:85743913:85768795:85768841,	85743770	85743913	85743813	85743813	Frame_Shift_Del	G	-	p.P31fs
LIHC	TCGA-G3-A3CJ-01	ZCCHC14	ENST00000268616.4,ENST00000568020.1	chr16	87457415:87457487:87466733:87466807:87493613:87493737,	87466734	87466807	87466762	87466762	Frame_Shift_Del	T	-	p.N110fs
LIHC	TCGA-G3-A3CJ-01	BANP	ENST00000393208.2,ENST00000479780.2,ENST00000439677.1,ENST00000355163.5,ENST00000459966.1,ENST00000355022.4	chr16	88014641:88014733:88017665:88017865:88037900:88037907,88014641:88014733:88017665:88017865:88039695:88039789,	88017666	88017865	88017797	88017797	Frame_Shift_Del	C	-	p.S90fs
LIHC	TCGA-G3-A3CJ-01	BANP	ENST00000393207.1,ENST00000286122.7	chr16	88014641:88014733:88017689:88017865:88037900:88037907,	88017690	88017865	88017797	88017797	Frame_Shift_Del	C	-	p.S90fs
LIHC	TCGA-G3-A3CJ-01	CYBA	ENST00000261623.3,ENST00000566229.1	chr16	88709947:88709979:88712523:88712605:88713162:88713233,	88712524	88712605	88712593	88712593	Frame_Shift_Del	G	-	p.P100fs
LIHC	TCGA-G3-A3CJ-01	PIEZO1	ENST00000474606.1,ENST00000301015.9	chr16	88791823:88791927:88792002:88792092:88792691:88792752,	88792003	88792092	88792082	88792082	Frame_Shift_Del	G	-	p.L1327fs
LIHC	TCGA-G3-A3CJ-01	PIEZO1	ENST00000301015.9	chr16	88793481:88793600:88793964:88794069:88798113:88798318,	88793965	88794069	88794038	88794038	Frame_Shift_Del	G	-	p.P1076fs
LIHC	TCGA-G3-A3CJ-01	CDT1	ENST00000301019.4	chr16	88872893:88873082:88873458:88873611:88873688:88873750,	88873459	88873611	88873584	88873584	Frame_Shift_Del	G	-	p.K416fs
LIHC	TCGA-G3-A3CJ-01	GALNS	ENST00000542788.1,ENST00000562593.1,ENST00000268695.5,ENST00000567525.1,ENST00000568613.1	chr16	88893109:88893246:88898405:88898509:88901620:88901760,	88898406	88898509	88898493	88898493	Frame_Shift_Del	G	-	p.P305fs
LIHC	TCGA-G3-A3CJ-01	PABPN1L	ENST00000411789.2	chr16	88931260:88931348:88931429:88931536:88931970:88932038,88930644:88930787:88931429:88931536:88931970:88932038,	88931430	88931536	88931523	88931523	Frame_Shift_Del	C	-	p.G158fs
LIHC	TCGA-G3-A3CJ-01	CBFA2T3	ENST00000360302.2,ENST00000327483.5,ENST00000448839.1,ENST00000436887.2,ENST00000268679.4	chr16	88945837:88945868:88947127:88947196:88947698:88947721,	88947128	88947196	88947160	88947160	Frame_Shift_Del	C	-	p.G480fs
LIHC	TCGA-G3-A3CJ-01	ACSF3	ENST00000543676.1,ENST00000544543.1,ENST00000378345.4,ENST00000317447.4,ENST00000406948.3,ENST00000540697.1	chr16	89178608:89178654:89180746:89180895:89187208:89187321,	89180747	89180895	89180775	89180775	Frame_Shift_Del	C	-	p.P336fs
LIHC	TCGA-G3-A3CJ-01	CDH15	ENST00000289746.2	chr16	89253836:89253965:89254507:89254693:89256650:89256904,	89254508	89254693	89254657	89254657	Frame_Shift_Del	C	-	p.D314fs
LIHC	TCGA-G3-A3CJ-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347629	89347629	Frame_Shift_Del	T	-	p.N1774fs
LIHC	TCGA-G3-A3CJ-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349878	89349878	Frame_Shift_Del	T	-	p.K1024fs
LIHC	TCGA-G3-A3CJ-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350450	89350450	Frame_Shift_Del	A	-	p.S834fs
LIHC	TCGA-G3-A3CJ-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350538	89350538	Frame_Shift_Del	T	-	p.K804fs
LIHC	TCGA-G3-A3CJ-01	CDK10	ENST00000378277.4,ENST00000472018.1,ENST00000504473.1,ENST00000507205.1,ENST00000510811.2,ENST00000512912.1,ENST00000505473.1,ENST00000511415.1,ENST00000331006.8,ENST00000568456.1,ENST00000505733.1,ENST00000353379.7,ENST00000564192.1	chr16	89756960:89757032:89757850:89757953:89758213:89758253,	89757851	89757953	89757936	89757936	Frame_Shift_Del	G	-	p.V59fs
LIHC	TCGA-G3-A3CJ-01	CDK10	ENST00000510811.2,ENST00000505473.1,ENST00000331006.8,ENST00000561477.1,ENST00000353379.7,ENST00000564192.1	chr16	89759681:89759734:89759805:89759875:89760580:89760640,	89759806	89759875	89759854	89759854	Frame_Shift_Del	C	-	p.T149fs
LIHC	TCGA-G3-A3CJ-01	VPS9D1	ENST00000389386.3	chr16	89782876:89783032:89783137:89783230:89785434:89785510,	89783138	89783230	89783208	89783208	Frame_Shift_Del	G	-	p.P66fs
LIHC	TCGA-G3-A3CJ-01	FANCA	ENST00000389301.3,ENST00000305699.11,ENST00000567879.1,ENST00000568369.1	chr16	89807211:89807274:89809207:89809346:89811366:89811416,	89809208	89809346	89809251	89809251	Frame_Shift_Del	T	-	p.N1241fs
LIHC	TCGA-G3-A3CJ-01	FANCA	ENST00000561660.1,ENST00000563318.1,ENST00000389301.3,ENST00000568369.1	chr16	89816137:89816310:89824984:89825113:89828356:89828430,89818568:89818630:89824984:89825113:89828356:89828430,	89824985	89825113	89824994	89824994	Frame_Shift_Del	A	-	p.F991fs
LIHC	TCGA-G3-A3CJ-01	SPIRE2	ENST00000566337.1,ENST00000569108.1,ENST00000378247.3,ENST00000393062.2	chr16	89920894:89921059:89922007:89922094:89922520:89922644,	89922008	89922094	89922010	89922010	Frame_Shift_Del	G	-	p.V298fs
LIHC	TCGA-G3-A3CJ-01	SPIRE2	ENST00000566337.1,ENST00000569108.1,ENST00000378247.3,ENST00000393062.2	chr16	89920894:89921059:89922007:89922094:89922520:89922644,	89922008	89922094	89922026	89922026	Frame_Shift_Del	C	-	p.P304fs
LIHC	TCGA-G3-A3CJ-01	TCF25	ENST00000568409.1	chr16	89958600:89958683:89960135:89960266:89961445:89961545,89958600:89958683:89960135:89960266:89961490:89961545,	89960136	89960266	89960142	89960142	Frame_Shift_Del	C	-	p.S235fs
LIHC	TCGA-G3-A3CJ-01	DEF8	ENST00000566079.1	chr16	90015210:90015222:90020696:90020784:90021576:90021650,90015824:90015921:90020696:90020784:90021576:90021674,	90020697	90020784	90020768	90020768	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-G3-A3CJ-01	DEF8	ENST00000569803.1,ENST00000561784.1,ENST00000570182.1,ENST00000563795.1,ENST00000566820.1,ENST00000418391.2,ENST00000563594.1,ENST00000567243.1,ENST00000568096.1	chr16	90015210:90015222:90020650:90020784:90021576:90021650,90015824:90015921:90020650:90020784:90021576:90021674,	90020651	90020784	90020768	90020768	Frame_Shift_Del	G	-	p.P36fs
LIHC	TCGA-G3-A3CJ-01	PRDM7	ENST00000568473.1	chr16	90127859:90127927:90128328:90128600:90133268:90133318,	90128329	90128600	90128546	90128546	Frame_Shift_Del	G	-	p.P16fs
LIHC	TCGA-G3-A3CJ-01	PRDM7	ENST00000407825.1,ENST00000449207.2	chr16	90128808:90128910:90130019:90130176:90133268:90133318,	90130020	90130176	90130067	90130067	Frame_Shift_Del	G	-	p.P155fs
LIHC	TCGA-G3-A3CJ-01	VPS53	ENST00000437048.2,ENST00000576149.1	chr17	424840:424978:436081:436151:440267:440416,	436082	436151	436126	436126	Frame_Shift_Del	G	-	p.H681fs
LIHC	TCGA-G3-A3CJ-01	VPS53	ENST00000573028.1,ENST00000437048.2,ENST00000576149.1,ENST00000291074.5,ENST00000446250.2,ENST00000570650.1,ENST00000571805.1	chr17	526772:526914:530413:530556:531327:531471,	530414	530556	530512	530512	Frame_Shift_Del	T	-	p.K292fs
LIHC	TCGA-G3-A3CJ-01	GLOD4	ENST00000571073.1,ENST00000575790.1,ENST00000301328.5,ENST00000575851.1,ENST00000574554.1,ENST00000536578.1,ENST00000301329.6	chr17	673283:673397:673660:673747:674564:674619,	673661	673747	673669	673669	Frame_Shift_Del	G	-	p.Q208fs
LIHC	TCGA-G3-A3CJ-01	PITPNA	ENST00000576761.1	chr17	1442162:1442246:1444859:1444934:1451589:1451681,	1444860	1444934	1444911	1444911	Frame_Shift_Del	A	-	p.F107fs
LIHC	TCGA-G3-A3CJ-01	WDR81	ENST00000464528.1,ENST00000309182.5,ENST00000409644.1	chr17	1631503:1631920:1633673:1633781:1634048:1634221,	1633674	1633781	1633717	1633717	Frame_Shift_Del	C	-	p.G1237fs
LIHC	TCGA-G3-A3CJ-01	SERPINF1	ENST00000570731.1	chr17	1665361:1665407:1670196:1670288:1673145:1673322,1666122:1666177:1670196:1670288:1673145:1673322,	1670197	1670288	1670276	1670276	Frame_Shift_Del	C	-	p.S24fs
LIHC	TCGA-G3-A3CJ-01	SMYD4	ENST00000305513.7	chr17	1690715:1690898:1703150:1704318:1707919:1708009,	1703151	1704318	1704270	1704270	Frame_Shift_Del	T	-	p.R140fs
LIHC	TCGA-G3-A3CJ-01	RPA1	ENST00000254719.5	chr17	1787105:1787238:1791968:1792145:1795126:1795234,	1791969	1792145	1791989	1791989	Frame_Shift_Del	G	-	p.V465fs
LIHC	TCGA-G3-A3CJ-01	METTL16	ENST00000263092.6,ENST00000571669.2	chr17	2367641:2367644:2371054:2371170:2380979:2381179,2367641:2367644:2371054:2371170:2376817:2376958,	2371055	2371170	2371076	2371076	Frame_Shift_Del	A	-	p.F188fs
LIHC	TCGA-G3-A3CJ-01	METTL16	ENST00000574752.1,ENST00000538844.1,ENST00000263092.6,ENST00000576556.1,ENST00000576976.1	chr17	2380979:2381179:2405497:2405625:2415052:2415129,	2405498	2405625	2405536	2405536	Frame_Shift_Del	A	-	p.F30fs
LIHC	TCGA-G3-A3CJ-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579802	2579802	Frame_Shift_Del	A	-	p.K303fs
LIHC	TCGA-G3-A3CJ-01	CLUH	ENST00000575014.1,ENST00000574210.1,ENST00000574426.2,ENST00000570628.2,ENST00000435359.1,ENST00000538975.1	chr17	2595297:2595391:2595654:2595776:2595864:2595990,	2595655	2595776	2595748	2595748	Frame_Shift_Del	A	-	p.V1117fs
LIHC	TCGA-G3-A3CJ-01	RAP1GAP2	ENST00000540393.2,ENST00000542807.1,ENST00000254695.8,ENST00000366401.4	chr17	2888276:2888360:2894590:2894691:2898630:2898760,	2894591	2894691	2894609	2894609	Frame_Shift_Del	T	-	p.F278fs
LIHC	TCGA-G3-A3CJ-01	ITGAE	ENST00000574026.2,ENST00000571185.1	chr17	3631307:3631320:3631398:3631462:3634397:3634477,	3631399	3631462	3631429	3631429	Frame_Shift_Del	C	-	p.G982fs
LIHC	TCGA-G3-A3CJ-01	P2RX1	ENST00000225538.3,ENST00000572418.1	chr17	3799885:3801173:3801302:3801404:3801777:3801843,	3801303	3801404	3801312	3801312	Frame_Shift_Del	C	-	p.G375fs
LIHC	TCGA-G3-A3CJ-01	ZZEF1	ENST00000573183.1,ENST00000571436.1,ENST00000572426.1,ENST00000381638.2	chr17	3937308:3937586:3945722:3945862:3947517:3947668,	3945723	3945862	3945727	3945727	Frame_Shift_Del	T	-	p.K2101fs
LIHC	TCGA-G3-A3CJ-01	ZZEF1	ENST00000381638.2	chr17	3974104:3974218:3975901:3976050:3977443:3977645,	3975902	3976050	3975951	3975951	Frame_Shift_Del	A	-	p.L1262fs
LIHC	TCGA-G3-A3CJ-01	ZZEF1	ENST00000381638.2	chr17	3974104:3974218:3975901:3976050:3977443:3977645,	3975902	3976050	3976015	3976015	Frame_Shift_Del	T	-	p.M1241fs
LIHC	TCGA-G3-A3CJ-01	ANKFY1	ENST00000572412.1,ENST00000341657.4,ENST00000574367.1,ENST00000570535.1	chr17	4075850:4075975:4076648:4076739:4077203:4077351,	4076649	4076739	4076695	4076695	Frame_Shift_Del	C	-	p.V990fs
LIHC	TCGA-G3-A3CJ-01	ANKFY1	ENST00000433651.1,ENST00000572412.1,ENST00000341657.4,ENST00000574367.1,ENST00000570934.1,ENST00000570535.1	chr17	4111227:4111377:4113118:4113242:4120277:4120413,	4113119	4113242	4113134	4113134	Frame_Shift_Del	A	-	p.I190fs
LIHC	TCGA-G3-A3CJ-01	SPNS3	ENST00000355530.2	chr17	4342952:4343018:4348326:4348463:4349342:4349494,	4348327	4348463	4348456	4348456	Frame_Shift_Del	C	-	p.S132fs
LIHC	TCGA-G3-A3CJ-01	SPNS2	ENST00000329078.3	chr17	4435836:4435979:4436271:4436424:4436537:4436727,	4436272	4436424	4436305	4436305	Frame_Shift_Del	G	-	p.S323fs
LIHC	TCGA-G3-A3CJ-01	SMTNL2	ENST00000338859.4,ENST00000389313.4	chr17	4495655:4495743:4496223:4496466:4497116:4497192,	4496224	4496466	4496361	4496361	Frame_Shift_Del	G	-	p.G209fs
LIHC	TCGA-G3-A3CJ-01	ARRB2	ENST00000571428.1,ENST00000570739.1	chr17	4614018:4614039:4619267:4619328:4619441:4619486,4614018:4614039:4619267:4619328:4619706:4619810,	4619268	4619328	4619282	4619282	Frame_Shift_Del	G	-	p.L23fs
LIHC	TCGA-G3-A3CJ-01	ZMYND15	ENST00000592813.1	chr17	4643336:4643345:4643813:4644435:4644876:4645111,	4643814	4644435	4643994	4643994	Frame_Shift_Del	C	-	p.P51fs
LIHC	TCGA-G3-A3CJ-01	ZMYND15	ENST00000269289.6,ENST00000573751.2,ENST00000433935.1,ENST00000574829.1,ENST00000592813.1	chr17	4645209:4645365:4645625:4645786:4646597:4646750,	4645626	4645786	4645689	4645689	Frame_Shift_Del	C	-	p.C349fs
LIHC	TCGA-G3-A3CJ-01	ZMYND15	ENST00000269289.6,ENST00000433935.1,ENST00000592813.1	chr17	4647663:4647762:4647919:4648073:4648164:4648223,	4647920	4648073	4648048	4648048	Frame_Shift_Del	G	-	p.Q604fs
LIHC	TCGA-G3-A3CJ-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4876469:4876548:4876879:4877064:4877679:4877795,	4876880	4877064	4876988	4876988	Frame_Shift_Del	T	-	p.K697fs
LIHC	TCGA-G3-A3CJ-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883681	4883681	Frame_Shift_Del	G	-	p.P311fs
LIHC	TCGA-G3-A3CJ-01	RABEP1	ENST00000546142.2,ENST00000341923.6,ENST00000408982.2	chr17	5185781:5185815:5211988:5212117:5235243:5235447,	5211989	5212117	5212019	5212019	Frame_Shift_Del	A	-	p.E22fs
LIHC	TCGA-G3-A3CJ-01	RABEP1	ENST00000537505.1,ENST00000546142.2,ENST00000341923.6,ENST00000262477.6,ENST00000408982.2,ENST00000575475.1	chr17	5266206:5266311:5268416:5268533:5271664:5271763,	5268417	5268533	5268420	5268420	Frame_Shift_Del	A	-	p.K559fs
LIHC	TCGA-G3-A3CJ-01	DHX33	ENST00000575153.1,ENST00000433302.3,ENST00000225296.3,ENST00000574023.1,ENST00000572490.1	chr17	5353522:5353726:5354126:5354254:5356899:5356988,	5354127	5354254	5354130	5354130	Frame_Shift_Del	G	-	p.A507fs
LIHC	TCGA-G3-A3CJ-01	DERL2	ENST00000571971.1,ENST00000570848.1,ENST00000575605.1	chr17	5383706:5383902:5384615:5384709:5386128:5386199,5384420:5384462:5384615:5384709:5386128:5386199,	5384616	5384709	5384639	5384639	Frame_Shift_Del	G	-	p.L102fs
LIHC	TCGA-G3-A3CJ-01	AIPL1	ENST00000574913.1,ENST00000575265.1,ENST00000571740.1,ENST00000381129.3,ENST00000576776.1	chr17	6331637:6331826:6337238:6337418:6338328:6338472,	6337239	6337418	6337405	6337405	Frame_Shift_Del	A	-	p.F37fs
LIHC	TCGA-G3-A3CJ-01	SLC13A5	ENST00000573648.1,ENST00000293800.6,ENST00000381074.4,ENST00000433363.2	chr17	6597415:6597516:6599044:6599260:6604322:6604445,	6599045	6599260	6599236	6599236	Frame_Shift_Del	C	-	p.G288fs
LIHC	TCGA-G3-A3CJ-01	XAF1	ENST00000346752.4	chr17	6661407:6661543:6663724:6663920:6673961:6674099,6661407:6661543:6663724:6663920:6665204:6665278,6661407:6661543:6663724:6663920:6665473:6665512,	6663725	6663920	6663745	6663745	Frame_Shift_Del	C	-	p.R82fs
LIHC	TCGA-G3-A3CJ-01	ALOX12	ENST00000480801.1	chr17	6902033:6902156:6902727:6902785:6903654:6903788,	6902728	6902785	6902760	6902760	Frame_Shift_Del	A	-	p.Q261fs
LIHC	TCGA-G3-A3CJ-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945699	6945699	Frame_Shift_Del	G	-	p.H268fs
LIHC	TCGA-G3-A3CJ-01	DLG4	ENST00000451807.2,ENST00000485100.1,ENST00000302955.6,ENST00000399510.2,ENST00000399506.2	chr17	7106263:7106366:7106511:7106648:7106742:7106912,	7106512	7106648	7106561	7106561	Frame_Shift_Del	C	-	p.G241fs
LIHC	TCGA-G3-A3CJ-01	DLG4	ENST00000485100.1,ENST00000302955.6,ENST00000399506.2	chr17	7107517:7107571:7111492:7111558:7120436:7120507,	7111493	7111558	7111527	7111527	Frame_Shift_Del	G	-	p.P64fs
LIHC	TCGA-G3-A3CJ-01	DLG4	ENST00000447163.1	chr17	7107517:7107571:7111393:7111558:7120436:7120507,	7111394	7111558	7111527	7111527	Frame_Shift_Del	G	-	p.P64fs
LIHC	TCGA-G3-A3CJ-01	ELP5	ENST00000354429.2,ENST00000573513.1,ENST00000574255.1	chr17	7155374:7155401:7155744:7155915:7156088:7156149,	7155745	7155915	7155891	7155891	Frame_Shift_Del	T	-	p.L24fs
LIHC	TCGA-G3-A3CJ-01	ELP5	ENST00000396627.2,ENST00000354429.2,ENST00000396628.2	chr17	7161906:7162002:7162144:7162245:7162889:7163250,	7162145	7162245	7162169	7162169	Frame_Shift_Del	T	-	p.F254fs
LIHC	TCGA-G3-A3CJ-01	YBX2	ENST00000571485.1,ENST00000007699.5,ENST00000571464.1,ENST00000570720.1,ENST00000571834.1	chr17	7192855:7193044:7193286:7193390:7193569:7193711,	7193287	7193390	7193356	7193356	Frame_Shift_Del	G	-	p.P260fs
LIHC	TCGA-G3-A3CJ-01	TNK1	ENST00000311668.2,ENST00000570896.1,ENST00000576812.1	chr17	7290702:7290776:7291724:7292023:7292106:7292202,	7291725	7292023	7291775	7291775	Frame_Shift_Del	G	-	p.G512fs
LIHC	TCGA-G3-A3CJ-01	EIF4A1	ENST00000578495.1	chr17	7478505:7478576:7479847:7480010:7480373:7480428,	7479848	7480010	7479969	7479969	Frame_Shift_Del	C	-	p.T158fs
LIHC	TCGA-G3-A3CJ-01	EIF4A1	ENST00000584860.1,ENST00000578324.1,ENST00000584784.1,ENST00000293831.8,ENST00000582746.1,ENST00000577731.1,ENST00000581384.1,ENST00000580888.1,ENST00000577269.1,ENST00000585024.1,ENST00000583802.1	chr17	7477865:7477996:7479841:7480010:7480373:7480428,7478505:7478576:7479841:7480010:7480373:7480428,	7479842	7480010	7479969	7479969	Frame_Shift_Del	C	-	p.T158fs
LIHC	TCGA-G3-A3CJ-01	EIF4A1	ENST00000396527.3,ENST00000583389.1,ENST00000584860.1,ENST00000578324.1,ENST00000293831.8,ENST00000582746.1,ENST00000581544.1,ENST00000578495.1,ENST00000577269.1,ENST00000578754.1	chr17	7480373:7480483:7480661:7480805:7480886:7480937,	7480662	7480805	7480708	7480708	Frame_Shift_Del	C	-	p.T224fs
LIHC	TCGA-G3-A3CJ-01	MPDU1	ENST00000571822.1,ENST00000359822.6,ENST00000581886.1,ENST00000578267.1,ENST00000576272.1	chr17	7489049:7489115:7489268:7489396:7489973:7490095,7489049:7489115:7489268:7489396:7490009:7490064,	7489269	7489396	7489289	7489289	Frame_Shift_Del	C	-	p.I65fs
LIHC	TCGA-G3-A3CJ-01	MPDU1	ENST00000423172.2	chr17	7489049:7489115:7489263:7489396:7490009:7490064,7489049:7489115:7489263:7489396:7489973:7490095,7489049:7489115:7489263:7489396:7490478:7490576,7489049:7489115:7489263:7489396:7490216:7490279,	7489264	7489396	7489289	7489289	Frame_Shift_Del	C	-	p.I65fs
LIHC	TCGA-G3-A3CJ-01	FXR2	ENST00000250113.7	chr17	7499141:7499312:7504726:7504843:7506226:7506320,	7504727	7504843	7504737	7504737	Frame_Shift_Del	T	-	p.K217fs
LIHC	TCGA-G3-A3CJ-01	KDM6B	ENST00000570632.1,ENST00000254846.5,ENST00000448097.2	chr17	7748631:7748774:7748867:7749009:7749189:7749288,	7748868	7749009	7748901	7748901	Frame_Shift_Del	C	-	p.A10fs
LIHC	TCGA-G3-A3CJ-01	CNTROB	ENST00000380255.3,ENST00000576723.1,ENST00000571632.1,ENST00000565740.1,ENST00000563694.1,ENST00000380262.3	chr17	7849045:7849304:7850888:7851040:7851233:7851297,	7850889	7851040	7850891	7850891	Frame_Shift_Del	G	-	p.G666fs
LIHC	TCGA-G3-A3CJ-01	AURKB	ENST00000578549.1,ENST00000580998.1,ENST00000535053.1,ENST00000316199.6,ENST00000578753.1,ENST00000534871.1,ENST00000585124.1	chr17	8108278:8108362:8108533:8108708:8109808:8109957,	8108534	8108708	8108576	8108576	Frame_Shift_Del	A	-	p.F274fs
LIHC	TCGA-G3-A3CJ-01	PFAS	ENST00000314666.6	chr17	8158344:8158450:8158819:8159009:8159122:8159228,	8158820	8159009	8158828	8158828	Frame_Shift_Del	C	-	p.H131fs
LIHC	TCGA-G3-A3CJ-01	PFAS	ENST00000314666.6	chr17	8158344:8158450:8158819:8159009:8159122:8159228,	8158820	8159009	8158897	8158897	Frame_Shift_Del	C	-	p.F154fs
LIHC	TCGA-G3-A3CJ-01	PFAS	ENST00000581288.1,ENST00000585319.1,ENST00000314666.6,ENST00000545834.1,ENST00000580356.1	chr17	8166892:8166954:8167092:8167254:8167529:8167585,	8167093	8167254	8167127	8167127	Frame_Shift_Del	G	-	p.W555fs
LIHC	TCGA-G3-A3CJ-01	SLC25A35	ENST00000577745.1,ENST00000579681.1,ENST00000580340.1,ENST00000380067.2,ENST00000585311.1,ENST00000396278.1	chr17	8194650:8194803:8195840:8195906:8197750:8198125,	8195841	8195906	8195859	8195859	Frame_Shift_Del	C	-	p.G141fs
LIHC	TCGA-G3-A3CJ-01	MYH10	ENST00000396239.1,ENST00000360416.3,ENST00000269243.4,ENST00000379980.4	chr17	8438704:8438819:8439075:8439249:8445424:8445598,	8439076	8439249	8439221	8439221	Frame_Shift_Del	A	-	p.L545fs
LIHC	TCGA-G3-A3CJ-01	NTN1	ENST00000173229.2,ENST00000538852.1,ENST00000546090.1	chr17	9086232:9086286:9124484:9124559:9142956:9147317,	9124485	9124559	9124513	9124513	Frame_Shift_Del	G	-	p.K480fs
LIHC	TCGA-G3-A3CJ-01	STX8	ENST00000306357.4,ENST00000574431.1	chr17	9395145:9395238:9408354:9408479:9471687:9471775,9395145:9395238:9408354:9408479:9448488:9448592,	9408355	9408479	9408364	9408364	Frame_Shift_Del	T	-	p.I148fs
LIHC	TCGA-G3-A3CJ-01	USP43	ENST00000574408.1	chr17	9569964:9570068:9578207:9578300:9580062:9580198,9559752:9559851:9578207:9578300:9580062:9580198,	9578208	9578300	9578259	9578259	Frame_Shift_Del	T	-	p.P264fs
LIHC	TCGA-G3-A3CJ-01	USP43	ENST00000570475.1	chr17	9604668:9605017:9613272:9613431:9615284:9615449,9604668:9605002:9613272:9613431:9615284:9615449,	9613273	9613431	9613357	9613357	Frame_Shift_Del	C	-	p.T388fs
LIHC	TCGA-G3-A3CJ-01	MYH3	ENST00000226209.7,ENST00000583535.1	chr17	10538156:10538340:10538683:10538880:10539051:10539170,	10538684	10538880	10538686	10538686	Frame_Shift_Del	G	-	p.A1390fs
LIHC	TCGA-G3-A3CJ-01	ZNF18	ENST00000582607.1,ENST00000454073.3	chr17	11881655:11882061:11886613:11886721:11887429:11887508,	11886614	11886721	11886661	11886661	Frame_Shift_Del	C	-	p.G272fs
LIHC	TCGA-G3-A3CJ-01	ZNF18	ENST00000580306.2,ENST00000322748.3	chr17	11881655:11882061:11886613:11886724:11887429:11887508,	11886614	11886724	11886661	11886661	Frame_Shift_Del	C	-	p.G272fs
LIHC	TCGA-G3-A3CJ-01	MAP2K4	ENST00000353533.5,ENST00000602686.1,ENST00000415385.3,ENST00000602375.1,ENST00000602811.1,ENST00000536413.2,ENST00000602305.1	chr17	12028610:12028688:12032455:12032604:12043155:12043201,	12032456	12032604	12032574	12032574	Frame_Shift_Del	C	-	p.S348fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP44	ENST00000544416.2,ENST00000262444.9,ENST00000578442.1,ENST00000340825.3,ENST00000580768.1,ENST00000379672.5	chr17	12799723:12799828:12812213:12812290:12819216:12819328,	12812214	12812290	12812270	12812270	Frame_Shift_Del	G	-	p.L85fs
LIHC	TCGA-G3-A3CJ-01	ARHGAP44	ENST00000340825.3,ENST00000580768.1	chr17	12862033:12862214:12877405:12877627:12883374:12883550,	12877406	12877627	12877457	12877457	Frame_Shift_Del	G	-	p.S531fs
LIHC	TCGA-G3-A3CJ-01	ELAC2	ENST00000465825.1,ENST00000584650.1,ENST00000484122.1,ENST00000426905.3,ENST00000487229.2,ENST00000480891.1,ENST00000395962.2,ENST00000338034.4	chr17	12895927:12896362:12897003:12897148:12897741:12897820,	12897004	12897148	12897057	12897057	Frame_Shift_Del	G	-	p.L734fs
LIHC	TCGA-G3-A3CJ-01	COX10	ENST00000537334.1,ENST00000536205.1,ENST00000261643.3,ENST00000581931.1,ENST00000580561.1	chr17	14063193:14063264:14095305:14095538:14110126:14110830,	14095306	14095538	14095442	14095442	Frame_Shift_Del	A	-	p.K278fs
LIHC	TCGA-G3-A3CJ-01	PMP22	ENST00000580584.1,ENST00000312280.3,ENST00000395938.2	chr17	15134383:15134397:15142787:15142928:15162410:15162510,	15142788	15142928	15142826	15142826	Frame_Shift_Del	C	-	p.G94fs
LIHC	TCGA-G3-A3CJ-01	NCOR1	ENST00000395857.3,ENST00000470782.1,ENST00000395849.2,ENST00000458113.2,ENST00000268712.3	chr17	15961220:15961378:15961784:15961913:15964714:15965208,	15961785	15961913	15961839	15961839	Frame_Shift_Del	G	-	p.Q1986fs
LIHC	TCGA-G3-A3CJ-01	NCOR1	ENST00000458113.2	chr17	15968798:15969008:15971207:15971435:15973478:15973612,15968798:15969005:15971207:15971435:15973478:15973612,	15971208	15971435	15971308	15971308	Frame_Shift_Del	A	-	p.F1547fs
LIHC	TCGA-G3-A3CJ-01	NCOR1	ENST00000395851.1,ENST00000458113.2,ENST00000268712.3	chr17	15976742:15976883:15978847:15979016:15983277:15983321,	15978848	15979016	15978963	15978963	Frame_Shift_Del	C	-	p.G1185fs
LIHC	TCGA-G3-A3CJ-01	UBB	ENST00000535788.1	chr17	16284408:16284498:16285215:16285444:16285672:16285675,	16285216	16285444	16285306	16285306	Frame_Shift_Del	A	-	p.K29fs
LIHC	TCGA-G3-A3CJ-01	TNFRSF13B	ENST00000579315.1,ENST00000581616.2,ENST00000261652.2	chr17	16852051:16852297:16855759:16855897:16875328:16875392,	16855760	16855897	16855874	16855874	Frame_Shift_Del	C	-	p.V29fs
LIHC	TCGA-G3-A3CJ-01	MPRIP	ENST00000341712.4,ENST00000395807.2,ENST00000395811.5,ENST00000577514.1,ENST00000444976.1,ENST00000395804.3	chr17	16946162:16946285:16979023:16979101:16981324:16981390,	16979024	16979101	16979026	16979026	Frame_Shift_Del	A	-	p.A42fs
LIHC	TCGA-G3-A3CJ-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000577514.1,ENST00000444976.1,ENST00000395804.3	chr17	16981324:16981390:17030015:17030167:17034930:17034933,	17030016	17030167	17030144	17030144	Frame_Shift_Del	G	-	p.A132fs
LIHC	TCGA-G3-A3CJ-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17046869:17046983:17049349:17049406:17050632:17050701,	17049350	17049406	17049368	17049368	Frame_Shift_Del	A	-	p.K391fs
LIHC	TCGA-G3-A3CJ-01	PEMT	ENST00000255389.5,ENST00000484838.2,ENST00000490392.1,ENST00000395782.1,ENST00000395783.1	chr17	17409540:17409615:17412747:17412859:17415822:17415968,	17412748	17412859	17412753	17412753	Frame_Shift_Del	G	-	p.A191fs
LIHC	TCGA-G3-A3CJ-01	PEMT	ENST00000472446.1	chr17	17412747:17412859:17415822:17415968:17421287:17421471,17412747:17412859:17415822:17415968:17425593:17425709,17412747:17412859:17415822:17415968:17480233:17480337,	17415823	17415968	17415946	17415946	Frame_Shift_Del	G	-	p.Q115fs
LIHC	TCGA-G3-A3CJ-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696871	17696871	Frame_Shift_Del	C	-	p.F203fs
LIHC	TCGA-G3-A3CJ-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696910	17696910	Frame_Shift_Del	C	-	p.F216fs
LIHC	TCGA-G3-A3CJ-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17700310	17700310	Frame_Shift_Del	G	-	p.G1350fs
LIHC	TCGA-G3-A3CJ-01	TOM1L2	ENST00000581396.1,ENST00000537091.2,ENST00000379504.3	chr17	17782940:17783057:17786018:17786177:17796974:17797124,17782940:17783057:17786018:17786177:17787947:17788082,	17786019	17786177	17786170	17786170	Frame_Shift_Del	G	-	p.P120fs
LIHC	TCGA-G3-A3CJ-01	ATPAF2	ENST00000496852.1,ENST00000474627.3,ENST00000488753.1	chr17	17924436:17924552:17925058:17925171:17927937:17927985,	17925059	17925171	17925113	17925113	Frame_Shift_Del	T	-	p.T188fs
LIHC	TCGA-G3-A3CJ-01	GID4	ENST00000481836.2	chr17	17957461:17957548:17960016:17960073:17962181:17962283,	17960017	17960073	17960068	17960068	Frame_Shift_Del	T	-	p.F220fs
LIHC	TCGA-G3-A3CJ-01	TOP3A	ENST00000321105.5,ENST00000542570.1,ENST00000583804.2,ENST00000584582.1,ENST00000580095.1,ENST00000582981.1	chr17	18194155:18194341:18195958:18196166:18198016:18198099,	18195959	18196166	18196085	18196085	Frame_Shift_Del	G	-	p.P385fs
LIHC	TCGA-G3-A3CJ-01	SHMT1	ENST00000539052.1,ENST00000316694.3,ENST00000395684.1,ENST00000580002.1	chr17	18236479:18236602:18238872:18238989:18243356:18243569,	18238873	18238989	18238981	18238981	Frame_Shift_Del	T	-	p.S275fs
LIHC	TCGA-G3-A3CJ-01	TRIM16L	ENST00000395672.2,ENST00000574042.2,ENST00000395671.4,ENST00000395902.3,ENST00000571708.1,ENST00000449552.2,ENST00000572555.1,ENST00000571542.1	chr17	18630963:18631071:18634382:18634548:18635351:18635447,	18634383	18634548	18634521	18634521	Frame_Shift_Del	A	-	p.K115fs
LIHC	TCGA-G3-A3CJ-01	EPN2	ENST00000347697.2,ENST00000495155.1,ENST00000395628.2	chr17	19185291:19185390:19186262:19187027:19213197:19213310,	19186263	19187027	19186525	19186525	Frame_Shift_Del	C	-	p.D31fs
LIHC	TCGA-G3-A3CJ-01	EPN2	ENST00000572627.2,ENST00000571254.1,ENST00000575595.1	chr17	19215364:19215457:19216438:19216592:19232023:19232075,	19216439	19216592	19216542	19216542	Frame_Shift_Del	G	-	p.W366fs
LIHC	TCGA-G3-A3CJ-01	EPN2	ENST00000395626.1,ENST00000580579.1,ENST00000347697.2,ENST00000395620.2,ENST00000395618.3,ENST00000395628.2,ENST00000314728.5	chr17	19215364:19215457:19216417:19216592:19232023:19232075,	19216418	19216592	19216542	19216542	Frame_Shift_Del	G	-	p.W366fs
LIHC	TCGA-G3-A3CJ-01	EPN2	ENST00000494192.2	chr17	19215364:19215457:19216435:19216592:19232023:19232075,	19216436	19216592	19216542	19216542	Frame_Shift_Del	G	-	p.W366fs
LIHC	TCGA-G3-A3CJ-01	ALDH3A2	ENST00000339618.4,ENST00000581518.1	chr17	19566698:19566812:19575033:19575269:19578870:19579060,19568260:19568360:19575033:19575269:19578870:19579060,19568260:19568360:19575033:19575269:19576463:19576588,	19575034	19575269	19575183	19575183	Frame_Shift_Del	T	-	p.F454fs
LIHC	TCGA-G3-A3CJ-01	SLC47A2	ENST00000325411.5,ENST00000350657.5,ENST00000467609.1	chr17	19605917:19605987:19606404:19606480:19607382:19607491,	19606405	19606480	19606435	19606435	Frame_Shift_Del	T	-	p.N369fs
LIHC	TCGA-G3-A3CJ-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729495	19729495	Frame_Shift_Del	T	-	p.A264fs
LIHC	TCGA-G3-A3CJ-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19729451:19729499:19741813:19741896:19744801:19744860,	19741814	19741896	19741830	19741830	Frame_Shift_Del	T	-	p.K257fs
LIHC	TCGA-G3-A3CJ-01	DHRS7B	ENST00000582161.1,ENST00000395511.3,ENST00000579303.1,ENST00000346603.4	chr17	21075334:21075509:21081545:21081655:21086906:21086976,	21081546	21081655	21081571	21081571	Frame_Shift_Del	G	-	p.A75fs
LIHC	TCGA-G3-A3CJ-01	DHRS7B	ENST00000583388.1	chr17	21087046:21087123:21087683:21087776:21092023:21092168,21087046:21087123:21087683:21087776:21094260:21094579,	21087684	21087776	21087763	21087763	Frame_Shift_Del	T	-	p.P202fs
LIHC	TCGA-G3-A3CJ-01	MAP2K3	ENST00000395491.2,ENST00000342679.4,ENST00000496046.1,ENST00000316920.6,ENST00000361818.5	chr17	21208362:21208440:21215453:21215593:21216803:21216849,	21215454	21215593	21215497	21215497	Frame_Shift_Del	C	-	p.T273fs
LIHC	TCGA-G3-A3CJ-01	WSB1	ENST00000348811.2,ENST00000262394.2,ENST00000467843.2	chr17	25637086:25637200:25638534:25638642:25639235:25639913,	25638535	25638642	25638600	25638600	Frame_Shift_Del	T	-	p.L355fs
LIHC	TCGA-G3-A3CJ-01	KSR1	ENST00000398988.3,ENST00000268763.6,ENST00000319524.6	chr17	25928385:25928427:25928918:25928984:25930859:25930914,	25928919	25928984	25928973	25928973	Frame_Shift_Del	A	-	p.E385fs
LIHC	TCGA-G3-A3CJ-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
LIHC	TCGA-G3-A3CJ-01	TMEM97	ENST00000583381.1	chr17	26646358:26646391:26652528:26652673:26653559:26653901,	26652529	26652673	26652586	26652586	Frame_Shift_Del	C	-	p.P63fs
LIHC	TCGA-G3-A3CJ-01	TMEM97	ENST00000583381.1	chr17	26646358:26646391:26652528:26652673:26653559:26653901,	26652529	26652673	26652613	26652613	Frame_Shift_Del	T	-	p.F71fs
LIHC	TCGA-G3-A3CJ-01	SLC13A2	ENST00000545060.1,ENST00000541739.2	chr17	26800755:26800832:26817471:26817608:26817718:26817924,	26817472	26817608	26817514	26817514	Frame_Shift_Del	G	-	p.G142fs
LIHC	TCGA-G3-A3CJ-01	SLC13A2	ENST00000545060.1,ENST00000579281.1,ENST00000314669.5,ENST00000459818.2,ENST00000537681.1,ENST00000444914.3	chr17	26818747:26818870:26820588:26820807:26821034:26821123,	26820589	26820807	26820758	26820758	Frame_Shift_Del	T	-	p.F400fs
LIHC	TCGA-G3-A3CJ-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26850978:26851110:26851520:26851985:26854268:26854379,	26851521	26851985	26851701	26851701	Frame_Shift_Del	T	-	p.F102fs
LIHC	TCGA-G3-A3CJ-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26850978:26851110:26851520:26851985:26854268:26854379,	26851521	26851985	26851849	26851849	Frame_Shift_Del	C	-	p.T151fs
LIHC	TCGA-G3-A3CJ-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26861352:26861556:26861724:26862216:26864134:26864454,	26861725	26862216	26862049	26862049	Frame_Shift_Del	C	-	p.T487fs
LIHC	TCGA-G3-A3CJ-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26941899:26942264:26942681:26942816:26943113:26943215,	26942682	26942816	26942791	26942791	Frame_Shift_Del	C	-	p.G2139fs
LIHC	TCGA-G3-A3CJ-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26951250:26951408:26955282:26955577:26958496:26958696,	26955283	26955577	26955293	26955293	Frame_Shift_Del	C	-	p.G1528fs
LIHC	TCGA-G3-A3CJ-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26951250:26951408:26955282:26955577:26958496:26958696,	26955283	26955577	26955339	26955339	Frame_Shift_Del	G	-	p.P1514fs
LIHC	TCGA-G3-A3CJ-01	SDF2	ENST00000587338.1	chr17	26976263:26976294:26982304:26982501:26989063:26989150,26978503:26978595:26982304:26982501:26988743:26988837,26978503:26978595:26982304:26982501:26989063:26989150,	26982305	26982501	26982431	26982431	Frame_Shift_Del	C	-	p.G74fs
LIHC	TCGA-G3-A3CJ-01	PHF12	ENST00000582436.1,ENST00000577226.1,ENST00000332830.4	chr17	27237243:27237387:27238129:27238255:27239499:27239804,	27238130	27238255	27238239	27238239	Frame_Shift_Del	G	-	p.P702fs
LIHC	TCGA-G3-A3CJ-01	PHF12	ENST00000582436.1,ENST00000577226.1,ENST00000332830.4,ENST00000378879.3,ENST00000268756.3,ENST00000582655.1	chr17	27246160:27246293:27248705:27248826:27250926:27250965,	27248706	27248826	27248784	27248784	Frame_Shift_Del	T	-	p.N253fs
LIHC	TCGA-G3-A3CJ-01	MYO18A	ENST00000354329.4,ENST00000530254.2,ENST00000527372.1,ENST00000531253.1,ENST00000533112.1	chr17	27434097:27434207:27436875:27437119:27437453:27437640,	27436876	27437119	27436895	27436895	Frame_Shift_Del	G	-	p.A1104fs
LIHC	TCGA-G3-A3CJ-01	TP53I13	ENST00000577934.1	chr17	27896335:27896377:27898608:27898737:27898874:27899075,27896335:27896377:27898608:27898737:27898849:27899075,	27898609	27898737	27898703	27898703	Frame_Shift_Del	C	-	p.S93fs
LIHC	TCGA-G3-A3CJ-01	NSRP1	ENST00000247026.5	chr17	28443856:28443881:28445097:28445191:28483557:28483680,28444319:28444350:28445097:28445191:28499559:28499610,28443856:28443881:28445097:28445191:28499559:28499610,	28445098	28445191	28445142	28445142	Frame_Shift_Del	T	-	p.V22fs
LIHC	TCGA-G3-A3CJ-01	BLMH	ENST00000578090.1,ENST00000577623.1,ENST00000261714.6,ENST00000394819.3	chr17	28599758:28599917:28601059:28601215:28612405:28612498,	28601060	28601215	28601101	28601101	Frame_Shift_Del	A	-	p.Y254fs
LIHC	TCGA-G3-A3CJ-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220386	29220386	Frame_Shift_Del	T	-	p.D1505fs
LIHC	TCGA-G3-A3CJ-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220494	29220494	Frame_Shift_Del	A	-	p.T1541fs
LIHC	TCGA-G3-A3CJ-01	TEFM	ENST00000580840.1,ENST00000581216.1	chr17	29227430:29227580:29231083:29231547:29233185:29233253,	29231084	29231547	29231244	29231244	Frame_Shift_Del	A	-	p.L112fs
LIHC	TCGA-G3-A3CJ-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654765	29654765	Frame_Shift_Del	C	-	p.I1839fs
LIHC	TCGA-G3-A3CJ-01	UTP6	ENST00000261708.4,ENST00000477128.1	chr17	30205268:30205346:30205720:30205800:30207591:30207773,	30205721	30205800	30205771	30205771	Frame_Shift_Del	A	-	p.C333fs
LIHC	TCGA-G3-A3CJ-01	RHOT1	ENST00000394692.2,ENST00000358365.3,ENST00000333942.6,ENST00000581031.1,ENST00000578205.1,ENST00000583994.1,ENST00000581094.1,ENST00000545287.2,ENST00000354266.3	chr17	30503179:30503232:30509775:30509884:30510189:30510291,	30509776	30509884	30509782	30509782	Frame_Shift_Del	T	-	p.P112fs
LIHC	TCGA-G3-A3CJ-01	RHOT1	ENST00000394692.2,ENST00000358365.3,ENST00000333942.6,ENST00000581031.1,ENST00000578205.1,ENST00000583994.1,ENST00000582602.1,ENST00000581094.1,ENST00000545287.2,ENST00000354266.3,ENST00000580392.1	chr17	30530955:30530992:30533928:30534048:30535125:30535328,	30533929	30534048	30534041	30534041	Frame_Shift_Del	T	-	p.I510fs
LIHC	TCGA-G3-A3CJ-01	RHOT1	ENST00000358365.3	chr17	30535320:30535328:30536368:30536464:30551634:30551979,30535320:30535328:30536368:30536464:30538134:30538214,	30536369	30536464	30536453	30536453	Frame_Shift_Del	A	-	p.L608fs
LIHC	TCGA-G3-A3CJ-01	RHBDL3	ENST00000538145.1	chr17	30594920:30594944:30611677:30611836:30615810:30615971,30593195:30593319:30611677:30611836:30615810:30615971,	30611678	30611836	30611762	30611762	Frame_Shift_Del	A	-	p.K74fs
LIHC	TCGA-G3-A3CJ-01	PSMD11	ENST00000261712.3,ENST00000457654.2	chr17	30804538:30804601:30806268:30806394:30806868:30806904,	30806269	30806394	30806304	30806304	Frame_Shift_Del	C	-	p.D316fs
LIHC	TCGA-G3-A3CJ-01	LIG3	ENST00000586058.1,ENST00000378526.4,ENST00000590630.1,ENST00000262327.5	chr17	33323082:33323214:33323592:33323672:33324756:33324844,	33323593	33323672	33323630	33323630	Frame_Shift_Del	T	-	p.V594fs
LIHC	TCGA-G3-A3CJ-01	RAD51D	ENST00000415064.2,ENST00000592577.1,ENST00000394589.4,ENST00000345365.6	chr17	33433404:33433500:33434384:33434466:33446129:33446191,33433459:33433500:33434384:33434466:33443877:33444056,33433459:33433500:33434384:33434466:33445519:33445638,33434006:33434141:33434384:33434466:33443877:33444056,33434006:33434141:33434384:33434466:33445519:33445638,	33434385	33434466	33434404	33434404	Frame_Shift_Del	G	-	p.P109fs
LIHC	TCGA-G3-A3CJ-01	SLFN5	ENST00000542451.1	chr17	33570107:33570162:33585669:33586721:33587989:33588115,	33585670	33586721	33586391	33586391	Frame_Shift_Del	T	-	p.F229fs
LIHC	TCGA-G3-A3CJ-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749326	33749326	Frame_Shift_Del	A	-	p.L241fs
LIHC	TCGA-G3-A3CJ-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749730	33749730	Frame_Shift_Del	A	-	p.F106fs
LIHC	TCGA-G3-A3CJ-01	SLFN13	ENST00000285013.6	chr17	33770807:33770939:33771633:33772712:33774286:33774413,	33771634	33772712	33771844	33771844	Frame_Shift_Del	A	-	p.C286fs
LIHC	TCGA-G3-A3CJ-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33806926	33806926	Frame_Shift_Del	A	-	p.F101fs
LIHC	TCGA-G3-A3CJ-01	SLFN12L	ENST00000260908.7,ENST00000449046.1	chr17	33805093:33805204:33806135:33807214:33849297:33849988,33805093:33805204:33806135:33807214:33814744:33814821,	33806136	33807214	33807125	33807125	Frame_Shift_Del	T	-	p.N35fs
LIHC	TCGA-G3-A3CJ-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37588194:37588269:37590501:37590573:37595417:37595446,	37590502	37590573	37590551	37590551	Frame_Shift_Del	A	-	p.S151fs
LIHC	TCGA-G3-A3CJ-01	MED1	ENST00000300651.6,ENST00000577831.1	chr17	37599802:37599881:37604050:37604157:37607290:37607521,	37604051	37604157	37604077	37604077	Frame_Shift_Del	T	-	p.T36fs
LIHC	TCGA-G3-A3CJ-01	STARD3	ENST00000544210.2	chr17	37814665:37814775:37814961:37815073:37815303:37815359,	37814962	37815073	37814974	37814974	Frame_Shift_Del	G	-	p.G183fs
LIHC	TCGA-G3-A3CJ-01	ERBB2	ENST00000582648.1,ENST00000582788.1	chr17	37856479:37856564:37863242:37863394:37864573:37864745,37856479:37856564:37863242:37863394:37868180:37868300,	37863243	37863394	37863340	37863340	Frame_Shift_Del	G	-	p.Q27fs
LIHC	TCGA-G3-A3CJ-01	ERBB2	ENST00000578373.1	chr17	37856479:37856564:37863242:37863457:37864573:37864745,	37863243	37863457	37863340	37863340	Frame_Shift_Del	G	-	p.Q27fs
LIHC	TCGA-G3-A3CJ-01	ERBB2	ENST00000406381.2,ENST00000584908.1,ENST00000584450.1,ENST00000578373.1,ENST00000541774.1,ENST00000578199.1,ENST00000540042.1,ENST00000269571.5,ENST00000584601.1,ENST00000583038.1,ENST00000540147.1	chr17	37864573:37864787:37865570:37865705:37866065:37866086,	37865571	37865705	37865605	37865605	Frame_Shift_Del	C	-	p.N128fs
LIHC	TCGA-G3-A3CJ-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37881579:37881655:37881959:37882106:37882814:37882912,	37881960	37882106	37881985	37881985	Frame_Shift_Del	T	-	p.T887fs
LIHC	TCGA-G3-A3CJ-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37881579:37881655:37881959:37882106:37882814:37882912,	37881960	37882106	37881989	37881989	Frame_Shift_Del	G	-	p.G889fs
LIHC	TCGA-G3-A3CJ-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37881959:37882106:37882814:37882912:37883067:37883169,	37882815	37882912	37882888	37882888	Frame_Shift_Del	C	-	p.D952fs
LIHC	TCGA-G3-A3CJ-01	ERBB2	ENST00000406381.2,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37883067:37883256:37883547:37883800:37883941:37884049,	37883548	37883800	37883733	37883733	Frame_Shift_Del	C	-	p.D1085fs
LIHC	TCGA-G3-A3CJ-01	GRB7	ENST00000394204.1,ENST00000309185.3,ENST00000309156.4,ENST00000394209.2,ENST00000473071.1,ENST00000394211.3,ENST00000578702.1,ENST00000445327.2	chr17	37899524:37899554:37899645:37899723:37900322:37900356,	37899646	37899723	37899714	37899714	Frame_Shift_Del	C	-	p.D218fs
LIHC	TCGA-G3-A3CJ-01	GRB7	ENST00000309156.4,ENST00000394209.2,ENST00000394211.3,ENST00000445327.2	chr17	37901980:37902041:37902165:37902253:37902361:37902451,	37902166	37902253	37902178	37902178	Frame_Shift_Del	C	-	p.T428fs
LIHC	TCGA-G3-A3CJ-01	IKZF3	ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000535189.1	chr17	37944510:37944627:37947668:37947836:37985639:37985741,37944510:37944627:37947668:37947836:37948925:37949186,	37947669	37947836	37947739	37947739	Frame_Shift_Del	A	-	p.F174fs
LIHC	TCGA-G3-A3CJ-01	IKZF3	ENST00000293068.5,ENST00000346872.3,ENST00000350532.3,ENST00000535189.1	chr17	37944510:37944627:37947668:37947836:37985639:37985741,37944510:37944627:37947668:37947836:37948925:37949186,	37947669	37947836	37947804	37947804	Frame_Shift_Del	C	-	p.A153fs
LIHC	TCGA-G3-A3CJ-01	GSDMB	ENST00000522564.1,ENST00000418519.1,ENST00000360317.3,ENST00000523371.1,ENST00000309481.7	chr17	38062217:38062238:38062363:38062524:38064428:38064467,38062217:38062238:38062363:38062524:38066008:38066177,38062217:38062238:38062363:38062524:38063213:38063240,	38062364	38062524	38062430	38062430	Frame_Shift_Del	T	-	p.K252fs
LIHC	TCGA-G3-A3CJ-01	GSDMB	ENST00000394175.2	chr17	38064428:38064467:38065210:38065295:38066008:38066177,38063213:38063240:38065210:38065295:38066008:38066177,38062447:38062524:38065210:38065295:38066008:38066177,	38065211	38065295	38065270	38065270	Frame_Shift_Del	G	-	p.P201fs
LIHC	TCGA-G3-A3CJ-01	WIPF2	ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38416786:38416919:38418776:38418893:38420741:38420753,	38418777	38418893	38418782	38418782	Frame_Shift_Del	A	-	p.K68fs
LIHC	TCGA-G3-A3CJ-01	RARA	ENST00000394089.2,ENST00000254066.5	chr17	38499047:38499119:38504567:38504716:38506035:38506070,38487108:38487648:38504567:38504716:38506035:38506070,	38504568	38504716	38504615	38504615	Frame_Shift_Del	C	-	p.P76fs
LIHC	TCGA-G3-A3CJ-01	TOP2A	ENST00000423485.1	chr17	38551700:38551791:38552534:38552717:38554809:38554893,	38552535	38552717	38552661	38552661	Frame_Shift_Del	C	-	p.G1198fs
LIHC	TCGA-G3-A3CJ-01	TNS4	ENST00000254051.6	chr17	38643287:38643712:38644797:38645221:38652238:38652772,	38644798	38645221	38645087	38645087	Frame_Shift_Del	G	-	p.R192fs
LIHC	TCGA-G3-A3CJ-01	SMARCE1	ENST00000377808.4,ENST00000400122.3	chr17	38785030:38785245:38786459:38786538:38786965:38787176,	38786460	38786538	38786509	38786509	Frame_Shift_Del	T	-	p.T318fs
LIHC	TCGA-G3-A3CJ-01	KRT40	ENST00000461923.1,ENST00000398486.2	chr17	39139297:39139380:39140078:39140526:39142555:39142626,	39140079	39140526	39140213	39140213	Frame_Shift_Del	C	-	p.E105fs
LIHC	TCGA-G3-A3CJ-01	HAP1	ENST00000310778.5	chr17	39883304:39883396:39883549:39883705:39884013:39884088,	39883550	39883705	39883595	39883595	Frame_Shift_Del	T	-	p.P462fs
LIHC	TCGA-G3-A3CJ-01	JUP	ENST00000393930.1,ENST00000393931.3,ENST00000310706.5	chr17	39914966:39915122:39919234:39919573:39920964:39921068,	39919235	39919573	39919482	39919482	Frame_Shift_Del	T	-	p.N417fs
LIHC	TCGA-G3-A3CJ-01	FKBP10	ENST00000321562.4,ENST00000585664.1,ENST00000585922.1,ENST00000429461.1	chr17	39969444:39969531:39973309:39973455:39974340:39974372,	39973310	39973455	39973343	39973343	Frame_Shift_Del	G	-	p.V93fs
LIHC	TCGA-G3-A3CJ-01	FKBP10	ENST00000321562.4,ENST00000455106.1,ENST00000490938.1,ENST00000489591.1,ENST00000544340.1	chr17	39976520:39976713:39977198:39977341:39977905:39978069,	39977199	39977341	39977311	39977311	Frame_Shift_Del	C	-	p.P458fs
LIHC	TCGA-G3-A3CJ-01	DNAJC7	ENST00000588814.1,ENST00000316603.7,ENST00000426588.3,ENST00000457167.4,ENST00000586335.1	chr17	40134001:40134025:40134272:40134419:40135580:40135654,	40134273	40134419	40134307	40134307	Frame_Shift_Del	T	-	p.K399fs
LIHC	TCGA-G3-A3CJ-01	KCNH4	ENST00000607371.1	chr17	40308912:40309136:40311752:40312453:40314265:40314339,	40311753	40312453	40312149	40312149	Frame_Shift_Del	G	-	p.P988fs
LIHC	TCGA-G3-A3CJ-01	KCNH4	ENST00000264661.3	chr17	40308912:40309136:40311748:40312453:40314265:40314339,	40311749	40312453	40312149	40312149	Frame_Shift_Del	G	-	p.P988fs
LIHC	TCGA-G3-A3CJ-01	GHDC	ENST00000414034.3	chr17	40341107:40341939:40342202:40342377:40342641:40342775,	40342203	40342377	40342329	40342329	Frame_Shift_Del	G	-	p.P446fs
LIHC	TCGA-G3-A3CJ-01	STAT5B	ENST00000293328.3	chr17	40354774:40354826:40359575:40359746:40362188:40362319,	40359576	40359746	40359732	40359732	Frame_Shift_Del	A	-	p.W641fs
LIHC	TCGA-G3-A3CJ-01	STAT5B	ENST00000468312.1,ENST00000293328.3,ENST00000415845.1	chr17	40375480:40375574:40376796:40376886:40379546:40379703,	40376797	40376886	40376866	40376866	Frame_Shift_Del	G	-	p.P102fs
LIHC	TCGA-G3-A3CJ-01	STAT5B	ENST00000468312.1,ENST00000293328.3,ENST00000415845.1	chr17	40376796:40376886:40379546:40379703:40384017:40384155,	40379547	40379703	40379587	40379587	Frame_Shift_Del	A	-	p.L83fs
LIHC	TCGA-G3-A3CJ-01	STAT5A	ENST00000588868.1,ENST00000452307.2,ENST00000444283.1,ENST00000590949.1,ENST00000478897.1,ENST00000345506.4	chr17	40441419:40441557:40441883:40442040:40443989:40444055,	40441884	40442040	40441919	40441919	Frame_Shift_Del	C	-	p.A55fs
LIHC	TCGA-G3-A3CJ-01	STAT3	ENST00000585517.1,ENST00000264657.5,ENST00000404395.3,ENST00000389272.3,ENST00000588969.1	chr17	40481427:40481475:40481571:40481665:40481764:40481794,	40481572	40481665	40481642	40481642	Frame_Shift_Del	C	-	p.G388fs
LIHC	TCGA-G3-A3CJ-01	TUBG1	ENST00000251413.3,ENST00000591509.1	chr17	40764101:40764161:40764444:40764524:40764964:40765091,	40764445	40764524	40764472	40764472	Frame_Shift_Del	G	-	p.G144fs
LIHC	TCGA-G3-A3CJ-01	EZH1	ENST00000592743.1,ENST00000586103.1,ENST00000585912.1,ENST00000590078.1,ENST00000435174.1,ENST00000415827.2,ENST00000428826.2,ENST00000585893.1,ENST00000585550.1,ENST00000588897.1,ENST00000591330.1	chr17	40857105:40857201:40858024:40858203:40859975:40860101,	40858025	40858203	40858063	40858063	Frame_Shift_Del	A	-	p.S601fs
LIHC	TCGA-G3-A3CJ-01	BECN1	ENST00000587880.1	chr17	40962877:40962946:40963672:40963815:40965965:40966007,40962877:40962946:40963672:40963815:40966541:40966611,40962877:40962946:40963672:40963815:40964248:40964374,	40963673	40963815	40963686	40963686	Frame_Shift_Del	A	-	p.C391fs
LIHC	TCGA-G3-A3CJ-01	BECN1	ENST00000587880.1	chr17	40962877:40962946:40963672:40963815:40965965:40966007,40962877:40962946:40963672:40963815:40966541:40966611,40962877:40962946:40963672:40963815:40964248:40964374,	40963673	40963815	40963789	40963789	Frame_Shift_Del	C	-	p.G356fs
LIHC	TCGA-G3-A3CJ-01	BECN1	ENST00000543382.2,ENST00000361523.4,ENST00000590099.1	chr17	40970238:40970433:40970561:40970698:40970804:40970895,	40970562	40970698	40970689	40970689	Frame_Shift_Del	C	-	p.D121fs
LIHC	TCGA-G3-A3CJ-01	PSME3	ENST00000589469.1	chr17	40989665:40989714:40990109:40990222:40990747:40990815,40989665:40989714:40990109:40990222:40990961:40990993,	40990110	40990222	40990130	40990130	Frame_Shift_Del	C	-	p.P105fs
LIHC	TCGA-G3-A3CJ-01	VAT1	ENST00000587147.1,ENST00000355653.3,ENST00000420567.3,ENST00000587173.1	chr17	41168323:41168565:41169857:41169947:41170052:41170062,	41169858	41169947	41169920	41169920	Frame_Shift_Del	C	-	p.G266fs
LIHC	TCGA-G3-A3CJ-01	BRCA1	ENST00000352993.3,ENST00000478531.1,ENST00000493795.1,ENST00000309486.4,ENST00000493919.1,ENST00000351666.3,ENST00000484087.1,ENST00000491747.2,ENST00000468300.1,ENST00000461221.1,ENST00000591534.1,ENST00000357654.3,ENST00000471181.2	chr17	41215890:41215968:41219624:41219712:41222944:41223083,	41219625	41219712	41219686	41219686	Frame_Shift_Del	T	-	p.K1375fs
LIHC	TCGA-G3-A3CJ-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244870	41244870	Frame_Shift_Del	T	-	p.K598fs
LIHC	TCGA-G3-A3CJ-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41245820	41245820	Frame_Shift_Del	T	-	p.K280fs
LIHC	TCGA-G3-A3CJ-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41332811:41332834:41338266:41338461:41341058:41341136,	41338267	41338461	41338284	41338284	Frame_Shift_Del	A	-	p.G75fs
LIHC	TCGA-G3-A3CJ-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41332811:41332834:41338266:41338461:41341058:41341136,	41338267	41338461	41338439	41338439	Frame_Shift_Del	C	-	p.T127fs
LIHC	TCGA-G3-A3CJ-01	NBR1	ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4	chr17	41354671:41354729:41355697:41355803:41361919:41362012,	41355698	41355803	41355737	41355737	Frame_Shift_Del	G	-	p.K887fs
LIHC	TCGA-G3-A3CJ-01	DHX8	ENST00000262415.3,ENST00000540306.1,ENST00000605777.1	chr17	41561507:41561553:41566816:41566902:41567758:41567831,	41566817	41566902	41566843	41566843	Frame_Shift_Del	A	-	p.K59fs
LIHC	TCGA-G3-A3CJ-01	DHX8	ENST00000262415.3,ENST00000540306.1,ENST00000605777.1	chr17	41561507:41561553:41566816:41566902:41567758:41567831,	41566817	41566902	41566882	41566882	Frame_Shift_Del	A	-	p.K72fs
LIHC	TCGA-G3-A3CJ-01	MPP3	ENST00000398393.1,ENST00000496503.1,ENST00000398389.4	chr17	41878810:41879245:41886323:41886446:41888174:41888283,	41886324	41886446	41886374	41886374	Frame_Shift_Del	T	-	p.R536fs
LIHC	TCGA-G3-A3CJ-01	MPP2	ENST00000461854.1,ENST00000520305.1,ENST00000523501.1,ENST00000536246.1,ENST00000518766.1,ENST00000377184.3,ENST00000269095.4	chr17	41957149:41957352:41958058:41958220:41958457:41958526,	41958059	41958220	41958130	41958130	Frame_Shift_Del	C	-	p.G360fs
LIHC	TCGA-G3-A3CJ-01	C17orf53	ENST00000588073.1,ENST00000585683.1,ENST00000319977.4	chr17	42232220:42232306:42232653:42232779:42235200:42235309,	42232654	42232779	42232738	42232738	Frame_Shift_Del	G	-	p.G578fs
LIHC	TCGA-G3-A3CJ-01	HIGD1B	ENST00000586911.1	chr17	42925578:42925620:42926473:42926756:42927699:42927844,	42926474	42926756	42926712	42926712	Frame_Shift_Del	C	-	p.T64fs
LIHC	TCGA-G3-A3CJ-01	HIGD1B	ENST00000591513.1,ENST00000253410.2	chr17	42925578:42925620:42926621:42926756:42927699:42927844,	42926622	42926756	42926712	42926712	Frame_Shift_Del	C	-	p.T64fs
LIHC	TCGA-G3-A3CJ-01	EFTUD2	ENST00000589825.1,ENST00000592576.1	chr17	42964030:42964118:42971784:42971893:42976736:42976771,	42971785	42971893	42971839	42971839	Frame_Shift_Del	A	-	p.L17fs
LIHC	TCGA-G3-A3CJ-01	EFTUD2	ENST00000592408.1	chr17	42964030:42964118:42971612:42971893:42976736:42976771,	42971613	42971893	42971839	42971839	Frame_Shift_Del	A	-	p.L17fs
LIHC	TCGA-G3-A3CJ-01	ACBD4	ENST00000321854.8,ENST00000591859.1,ENST00000591136.1,ENST00000589798.1,ENST00000586346.1,ENST00000592162.1,ENST00000398322.3,ENST00000589752.1,ENST00000431281.1,ENST00000590289.1,ENST00000376955.4,ENST00000585553.1	chr17	43214058:43214143:43214385:43214506:43214734:43214821,	43214386	43214506	43214406	43214406	Frame_Shift_Del	G	-	p.L105fs
LIHC	TCGA-G3-A3CJ-01	FMNL1	ENST00000328118.3,ENST00000331495.3	chr17	43299291:43299620:43307970:43308054:43309733:43309817,	43307971	43308054	43307986	43307986	Frame_Shift_Del	C	-	p.P50fs
LIHC	TCGA-G3-A3CJ-01	PLEKHM1	ENST00000446609.2,ENST00000581448.1,ENST00000430334.3,ENST00000579197.1,ENST00000421073.2	chr17	43517528:43517592:43522835:43523029:43527983:43528129,	43522836	43523029	43522885	43522885	Frame_Shift_Del	C	-	p.D930fs
LIHC	TCGA-G3-A3CJ-01	CDC27	ENST00000066544.3,ENST00000527547.1,ENST00000533415.1,ENST00000571643.1,ENST00000446365.2,ENST00000531206.1	chr17	45206758:45206887:45209622:45209740:45214517:45214610,	45209623	45209740	45209674	45209674	Frame_Shift_Del	T	-	p.K660fs
LIHC	TCGA-G3-A3CJ-01	EFCAB13	ENST00000331493.2,ENST00000520776.1	chr17	45422381:45422464:45447802:45447874:45451837:45452004,45438743:45438887:45447802:45447874:45451837:45452004,	45447803	45447874	45447857	45447857	Frame_Shift_Del	A	-	p.E287fs
LIHC	TCGA-G3-A3CJ-01	COPZ2	ENST00000006101.4,ENST00000584666.1,ENST00000581756.1,ENST00000579263.1	chr17	46110051:46110107:46110576:46110668:46111228:46111238,	46110577	46110668	46110647	46110647	Frame_Shift_Del	C	-	p.G95fs
LIHC	TCGA-G3-A3CJ-01	SKAP1	ENST00000579476.1,ENST00000584709.1,ENST00000336915.6	chr17	46210807:46211178:46214590:46214699:46239830:46239928,	46214591	46214699	46214643	46214643	Frame_Shift_Del	A	-	p.V345fs
LIHC	TCGA-G3-A3CJ-01	CALCOCO2	ENST00000509415.1	chr17	46925425:46925444:46925683:46925817:46926613:46926631,	46925684	46925817	46925783	46925783	Frame_Shift_Del	A	-	p.E128fs
LIHC	TCGA-G3-A3CJ-01	UBE2Z	ENST00000506498.1	chr17	46988169:46988242:46990195:46990327:46993437:46993485,	46990196	46990327	46990243	46990243	Frame_Shift_Del	T	-	p.G146fs
LIHC	TCGA-G3-A3CJ-01	UBE2Z	ENST00000511373.1,ENST00000360943.5	chr17	46988169:46988242:46990195:46990383:46993437:46993485,	46990196	46990383	46990243	46990243	Frame_Shift_Del	T	-	p.G146fs
LIHC	TCGA-G3-A3CJ-01	IGF2BP1	ENST00000290341.3	chr17	47109271:47109335:47115529:47115811:47117318:47117453,	47115530	47115811	47115683	47115683	Frame_Shift_Del	G	-	p.A185fs
LIHC	TCGA-G3-A3CJ-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394195	47394195	Frame_Shift_Del	T	-	p.N298fs
LIHC	TCGA-G3-A3CJ-01	SLC35B1	ENST00000507773.1,ENST00000240333.6,ENST00000415270.2,ENST00000502406.1	chr17	47778700:47778872:47780219:47780373:47780549:47780656,	47780220	47780373	47780344	47780344	Frame_Shift_Del	A	-	p.F264fs
LIHC	TCGA-G3-A3CJ-01	SLC35B1	ENST00000502406.1	chr17	47782583:47782643:47783227:47783671:47784326:47784429,	47783228	47783671	47783656	47783656	Frame_Shift_Del	C	-	p.R83fs
LIHC	TCGA-G3-A3CJ-01	SLC35B1	ENST00000503334.1,ENST00000507773.1,ENST00000505765.2,ENST00000511657.1	chr17	47783246:47783258:47783565:47783671:47784326:47784429,	47783566	47783671	47783656	47783656	Frame_Shift_Del	C	-	p.R83fs
LIHC	TCGA-G3-A3CJ-01	SLC35B1	ENST00000240333.6,ENST00000514907.1,ENST00000508520.1,ENST00000415270.2,ENST00000515850.1,ENST00000435059.2	chr17	47783246:47783258:47783565:47783696:47784326:47784429,	47783566	47783696	47783656	47783656	Frame_Shift_Del	C	-	p.R83fs
LIHC	TCGA-G3-A3CJ-01	FAM117A	ENST00000513602.1	chr17	47799868:47799956:47809912:47810082:47824542:47824625,47799868:47799956:47809912:47810082:47865858:47865937,	47809913	47810082	47810027	47810027	Frame_Shift_Del	A	-	p.L84fs
LIHC	TCGA-G3-A3CJ-01	FAM117A	ENST00000513602.1	chr17	47799868:47799956:47809912:47810082:47824542:47824625,47799868:47799956:47809912:47810082:47865858:47865937,	47809913	47810082	47810058	47810058	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-G3-A3CJ-01	KAT7	ENST00000509773.1	chr17	47869299:47869395:47874111:47874288:47882724:47882807,	47874112	47874288	47874152	47874152	Frame_Shift_Del	G	-	p.E69fs
LIHC	TCGA-G3-A3CJ-01	KAT7	ENST00000454930.2,ENST00000503935.2,ENST00000259021.4	chr17	47882724:47882807:47888837:47888936:47893164:47893258,47886480:47886570:47888837:47888936:47893164:47893258,	47888838	47888936	47888892	47888892	Frame_Shift_Del	A	-	p.K114fs
LIHC	TCGA-G3-A3CJ-01	KAT7	ENST00000509773.1,ENST00000454930.2,ENST00000514540.1,ENST00000424009.2,ENST00000512616.1,ENST00000435742.2,ENST00000503935.2,ENST00000510819.1,ENST00000259021.4,ENST00000513171.1,ENST00000513980.1,ENST00000509794.1	chr17	47899046:47899152:47900563:47900657:47903361:47903508,	47900564	47900657	47900582	47900582	Frame_Shift_Del	A	-	p.N313fs
LIHC	TCGA-G3-A3CJ-01	PPP1R9B	ENST00000501501.2,ENST00000316878.6	chr17	48216824:48216946:48217457:48217593:48218633:48218738,	48217458	48217593	48217520	48217520	Frame_Shift_Del	C	-	p.E600fs
LIHC	TCGA-G3-A3CJ-01	PPP1R9B	ENST00000513579.1	chr17	48216824:48216946:48217457:48217724:48218633:48218738,	48217458	48217724	48217520	48217520	Frame_Shift_Del	C	-	p.E600fs
LIHC	TCGA-G3-A3CJ-01	SGCA	ENST00000262018.3	chr17	48246452:48246465:48247503:48247712:48248000:48248027,48246452:48246615:48247503:48247712:48248000:48248027,	48247504	48247712	48247555	48247555	Frame_Shift_Del	G	-	p.G267fs
LIHC	TCGA-G3-A3CJ-01	COL1A1	ENST00000225964.5	chr17	48267219:48267273:48267361:48267469:48267687:48267741,	48267362	48267469	48267372	48267372	Frame_Shift_Del	G	-	p.P850fs
LIHC	TCGA-G3-A3CJ-01	COL1A1	ENST00000225964.5	chr17	48267903:48267957:48268177:48268285:48268743:48268851,	48268178	48268285	48268217	48268217	Frame_Shift_Del	G	-	p.P768fs
LIHC	TCGA-G3-A3CJ-01	XYLT2	ENST00000017003.2	chr17	48433871:48434134:48435567:48435901:48437329:48438512,48434478:48434613:48435567:48435901:48437329:48438512,	48435568	48435901	48435585	48435585	Frame_Shift_Del	C	-	p.D653fs
LIHC	TCGA-G3-A3CJ-01	XYLT2	ENST00000017003.2	chr17	48433871:48434134:48435567:48435901:48437329:48438512,48434478:48434613:48435567:48435901:48437329:48438512,	48435568	48435901	48435613	48435613	Frame_Shift_Del	G	-	p.G664fs
LIHC	TCGA-G3-A3CJ-01	XYLT2	ENST00000017003.2	chr17	48433871:48434134:48435567:48435901:48437329:48438512,48434478:48434613:48435567:48435901:48437329:48438512,	48435568	48435901	48435896	48435896	Frame_Shift_Del	G	-	p.R757fs
LIHC	TCGA-G3-A3CJ-01	MRPL27	ENST00000503633.1,ENST00000225969.4,ENST00000442592.3	chr17	48447392:48447460:48447815:48447947:48450491:48450536,	48447816	48447947	48447866	48447866	Frame_Shift_Del	T	-	p.N41fs
LIHC	TCGA-G3-A3CJ-01	EME1	ENST00000338165.4,ENST00000511648.2,ENST00000393271.2,ENST00000513077.1	chr17	48453469:48453554:48455955:48456042:48456134:48456256,	48455956	48456042	48456031	48456031	Frame_Shift_Del	A	-	p.N327fs
LIHC	TCGA-G3-A3CJ-01	EME1	ENST00000510007.1	chr17	48453469:48453554:48455960:48456042:48456134:48456256,	48455961	48456042	48456031	48456031	Frame_Shift_Del	A	-	p.N327fs
LIHC	TCGA-G3-A3CJ-01	ACSF2	ENST00000427954.2,ENST00000300441.4	chr17	48538037:48538233:48538602:48538731:48538993:48539047,	48538603	48538731	48538609	48538609	Frame_Shift_Del	A	-	p.K136fs
LIHC	TCGA-G3-A3CJ-01	ACSF2	ENST00000506582.1	chr17	48538037:48538233:48538602:48538648:48538993:48539047,	48538603	48538648	48538609	48538609	Frame_Shift_Del	A	-	p.K136fs
LIHC	TCGA-G3-A3CJ-01	EPN3	ENST00000537145.1,ENST00000574464.1,ENST00000512379.1,ENST00000268933.3	chr17	48616547:48616676:48618153:48618423:48618589:48618694,48617607:48617695:48618153:48618423:48618589:48618694,	48618154	48618423	48618190	48618190	Frame_Shift_Del	G	-	p.W339fs
LIHC	TCGA-G3-A3CJ-01	ABCC3	ENST00000427699.1,ENST00000505699.1,ENST00000285238.8,ENST00000513511.1	chr17	48735503:48735568:48735795:48735857:48736597:48736729,	48735796	48735857	48735838	48735838	Frame_Shift_Del	T	-	p.F220fs
LIHC	TCGA-G3-A3CJ-01	ABCC3	ENST00000515585.1	chr17	48735503:48735568:48735795:48735907:48736597:48736729,	48735796	48735907	48735838	48735838	Frame_Shift_Del	T	-	p.F220fs
LIHC	TCGA-G3-A3CJ-01	LUC7L3	ENST00000240304.1,ENST00000393227.2,ENST00000508218.1	chr17	48797162:48797192:48814320:48814387:48817666:48817706,	48814321	48814387	48814327	48814327	Frame_Shift_Del	A	-	p.K36fs
LIHC	TCGA-G3-A3CJ-01	SPAG9	ENST00000505279.1,ENST00000357122.4	chr17	49133772:49133843:49156944:49157065:49197714:49198095,	49156945	49157065	49157025	49157025	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-G3-A3CJ-01	UTP18	ENST00000225298.7	chr17	49362628:49362729:49365389:49365564:49371263:49371406,	49365390	49365564	49365539	49365539	Frame_Shift_Del	A	-	p.E493fs
LIHC	TCGA-G3-A3CJ-01	UTP18	ENST00000583205.1	chr17	49362628:49362729:49365484:49365564:49371263:49371406,	49365485	49365564	49365539	49365539	Frame_Shift_Del	A	-	p.E493fs
LIHC	TCGA-G3-A3CJ-01	TOM1L1	ENST00000572158.1,ENST00000575882.1,ENST00000536554.1,ENST00000348161.4,ENST00000540336.1,ENST00000574653.1,ENST00000445275.2,ENST00000571319.1	chr17	53026911:53026984:53027405:53027487:53037926:53037988,	53027406	53027487	53027413	53027413	Frame_Shift_Del	A	-	p.T432fs
LIHC	TCGA-G3-A3CJ-01	STXBP4	ENST00000376352.2	chr17	53120618:53120686:53124449:53124515:53150260:53150437,	53124450	53124515	53124504	53124504	Frame_Shift_Del	A	-	p.N334fs
LIHC	TCGA-G3-A3CJ-01	PCTP	ENST00000417982.2	chr17	53844695:53844813:53848466:53848562:53851016:53851256,	53848467	53848562	53848509	53848509	Frame_Shift_Del	G	-	p.W101fs
LIHC	TCGA-G3-A3CJ-01	MTMR4	ENST00000579925.1,ENST00000323456.5	chr17	56581663:56581849:56582139:56582335:56582832:56582944,	56582140	56582335	56582168	56582168	Frame_Shift_Del	A	-	p.L425fs
LIHC	TCGA-G3-A3CJ-01	RAD51C	ENST00000475762.1	chr17	56798106:56798173:56801400:56801461:56809841:56809905,56798106:56798173:56801400:56801461:56809844:56809880,56787219:56787351:56801400:56801461:56809844:56809880,	56801401	56801461	56801453	56801453	Frame_Shift_Del	A	-	p.R319fs
LIHC	TCGA-G3-A3CJ-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57089688:57089807:57092970:57093160:57094656:57094785,	57092971	57093160	57093074	57093074	Frame_Shift_Del	T	-	p.T703fs
LIHC	TCGA-G3-A3CJ-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57092970:57093160:57094656:57094785:57105775:57105940,	57094657	57094785	57094695	57094695	Frame_Shift_Del	T	-	p.N661fs
LIHC	TCGA-G3-A3CJ-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57125043:57125180:57126538:57126754:57128574:57128689,	57126539	57126754	57126682	57126682	Frame_Shift_Del	G	-	p.Q341fs
LIHC	TCGA-G3-A3CJ-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57128574:57128689:57134235:57134415:57138392:57138469,	57134236	57134415	57134299	57134299	Frame_Shift_Del	A	-	p.F257fs
LIHC	TCGA-G3-A3CJ-01	DHX40	ENST00000425628.3	chr17	57642973:57643144:57643987:57644070:57647878:57648024,57642973:57643144:57643987:57644070:57650476:57650596,	57643988	57644070	57644052	57644052	Frame_Shift_Del	A	-	p.R59fs
LIHC	TCGA-G3-A3CJ-01	DHX40	ENST00000580218.1	chr17	57642973:57643144:57643987:57644155:57647878:57648024,57642973:57643144:57643987:57644155:57650476:57650596,	57643988	57644155	57644052	57644052	Frame_Shift_Del	A	-	p.R59fs
LIHC	TCGA-G3-A3CJ-01	CLTC	ENST00000269122.3,ENST00000393043.1	chr17	57721642:57721844:57724758:57725027:57725600:57725762,	57724759	57725027	57724836	57724836	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-G3-A3CJ-01	CLTC	ENST00000579456.1,ENST00000269122.3,ENST00000393043.1	chr17	57760267:57760375:57760455:57760623:57760747:57760897,	57760456	57760623	57760467	57760467	Frame_Shift_Del	T	-	p.Y1295fs
LIHC	TCGA-G3-A3CJ-01	CLTC	ENST00000579456.1,ENST00000269122.3,ENST00000393043.1	chr17	57761074:57761117:57761235:57761346:57762416:57762587,	57761236	57761346	57761321	57761321	Frame_Shift_Del	T	-	p.L1470fs
LIHC	TCGA-G3-A3CJ-01	VMP1	ENST00000585847.1,ENST00000536180.1	chr17	57808781:57808883:57812698:57812834:57842331:57842429,57808781:57808883:57812698:57812834:57814813:57814835,57808781:57808883:57812698:57812834:57816197:57816308,	57812699	57812834	57812790	57812790	Frame_Shift_Del	T	-	p.Y56fs
LIHC	TCGA-G3-A3CJ-01	VMP1	ENST00000539763.1,ENST00000586245.1,ENST00000262291.4,ENST00000587945.1	chr17	57814813:57814904:57816197:57816308:57842412:57842499,57812698:57812834:57816197:57816308:57842331:57842429,57814813:57814904:57816197:57816308:57842331:57842429,	57816198	57816308	57816256	57816256	Frame_Shift_Del	T	-	p.I121fs
LIHC	TCGA-G3-A3CJ-01	TUBD1	ENST00000591548.1,ENST00000588009.1,ENST00000340993.6	chr17	57941143:57941208:57943969:57944110:57963443:57963591,57941143:57941208:57943969:57944110:57951899:57952061,57941143:57941208:57943969:57944110:57955463:57955637,	57943970	57944110	57944057	57944057	Frame_Shift_Del	T	-	p.M330fs
LIHC	TCGA-G3-A3CJ-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57955661:57955695:57958254:57958471:57962021:57962117,57955661:57955695:57958254:57958471:57963443:57963591,	57958255	57958471	57958290	57958290	Frame_Shift_Del	T	-	p.M168fs
LIHC	TCGA-G3-A3CJ-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57955661:57955695:57958254:57958471:57962021:57962117,57955661:57955695:57958254:57958471:57963443:57963591,	57958255	57958471	57958382	57958382	Frame_Shift_Del	A	-	p.F137fs
LIHC	TCGA-G3-A3CJ-01	TUBD1	ENST00000340993.6,ENST00000394239.3,ENST00000325752.3,ENST00000376094.4,ENST00000592426.1	chr17	57943969:57944110:57963443:57963591:57970057:57970076,57958298:57958471:57963443:57963591:57970057:57970076,57958298:57958471:57963443:57963591:57968191:57968364,	57963444	57963591	57963473	57963473	Frame_Shift_Del	T	-	p.K97fs
LIHC	TCGA-G3-A3CJ-01	RPS6KB1	ENST00000443572.2	chr17	57987922:57987972:57990044:57990165:58003795:58003943,	57990045	57990165	57990104	57990104	Frame_Shift_Del	A	-	p.E84fs
LIHC	TCGA-G3-A3CJ-01	RPS6KB1	ENST00000489824.1,ENST00000393021.3,ENST00000225577.4,ENST00000406116.3	chr17	57990044:57990165:57991995:57992064:58003795:58003943,	57991996	57992064	57992010	57992010	Frame_Shift_Del	A	-	p.R109fs
LIHC	TCGA-G3-A3CJ-01	APPBP2	ENST00000083182.3,ENST00000589341.1	chr17	58533656:58533742:58538023:58538148:58539170:58539276,	58538024	58538148	58538108	58538108	Frame_Shift_Del	T	-	p.N326fs
LIHC	TCGA-G3-A3CJ-01	PPM1D	ENST00000392995.3,ENST00000305921.3	chr17	58700881:58701110:58711213:58711338:58725252:58725443,	58711214	58711338	58711282	58711282	Frame_Shift_Del	T	-	p.V257fs
LIHC	TCGA-G3-A3CJ-01	TBX2	ENST00000240328.3,ENST00000419047.1	chr17	59481966:59482130:59482562:59483197:59485414:59486786,	59482563	59483197	59482907	59482907	Frame_Shift_Del	C	-	p.P466fs
LIHC	TCGA-G3-A3CJ-01	BRIP1	ENST00000577598.1,ENST00000259008.2,ENST00000579028.1	chr17	59853761:59853923:59857621:59857762:59858200:59858366,	59857622	59857762	59857629	59857629	Frame_Shift_Del	T	-	p.N643fs
LIHC	TCGA-G3-A3CJ-01	INTS2	ENST00000584967.1,ENST00000583822.1,ENST00000444766.3,ENST00000251334.6	chr17	59955341:59955449:59958367:59958532:59962261:59962366,	59958368	59958532	59958484	59958484	Frame_Shift_Del	A	-	p.L721fs
LIHC	TCGA-G3-A3CJ-01	INTS2	ENST00000444766.3,ENST00000251334.6	chr17	59971125:59971260:59972675:59972744:59974829:59974944,	59972676	59972744	59972685	59972685	Frame_Shift_Del	A	-	p.F526fs
LIHC	TCGA-G3-A3CJ-01	MED13	ENST00000397786.2	chr17	60033699:60033842:60038227:60038451:60038948:60039140,	60038228	60038451	60038335	60038335	Frame_Shift_Del	A	-	p.F1791fs
LIHC	TCGA-G3-A3CJ-01	MED13	ENST00000397786.2	chr17	60045395:60045619:60050087:60050249:60059558:60060475,	60050088	60050249	60050166	60050166	Frame_Shift_Del	T	-	p.R1297fs
LIHC	TCGA-G3-A3CJ-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072555	60072555	Frame_Shift_Del	T	-	p.K713fs
LIHC	TCGA-G3-A3CJ-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072611	60072611	Frame_Shift_Del	T	-	p.I695fs
LIHC	TCGA-G3-A3CJ-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60518101:60518117:60522197:60522304:60525061:60525127,	60522198	60522304	60522298	60522298	Frame_Shift_Del	A	-	p.K305fs
LIHC	TCGA-G3-A3CJ-01	TLK2	ENST00000326270.9,ENST00000343388.7,ENST00000542523.1,ENST00000580705.1,ENST00000346027.5,ENST00000582809.1	chr17	60613530:60613698:60631023:60631116:60637376:60637395,60629665:60629758:60631023:60631116:60637376:60637395,	60631024	60631116	60631040	60631040	Frame_Shift_Del	A	-	p.E66fs
LIHC	TCGA-G3-A3CJ-01	MRC2	ENST00000303375.5,ENST00000584265.1	chr17	60741908:60742310:60743454:60743628:60743815:60743980,	60743455	60743628	60743474	60743474	Frame_Shift_Del	A	-	p.G180fs
LIHC	TCGA-G3-A3CJ-01	CYB561	ENST00000582297.1	chr17	61511838:61511955:61512446:61512604:61513048:61513152,61510505:61510776:61512446:61512604:61513048:61513152,	61512447	61512604	61512492	61512492	Frame_Shift_Del	C	-	p.A189fs
LIHC	TCGA-G3-A3CJ-01	CYB561	ENST00000582034.1	chr17	61513414:61513513:61514706:61514845:61523605:61523652,	61514707	61514845	61514746	61514746	Frame_Shift_Del	G	-	p.L55fs
LIHC	TCGA-G3-A3CJ-01	CYB561	ENST00000392976.1,ENST00000584031.1	chr17	61513414:61513513:61514706:61514921:61523605:61523652,61513414:61513513:61514706:61514921:61523258:61523545,	61514707	61514921	61514746	61514746	Frame_Shift_Del	G	-	p.L55fs
LIHC	TCGA-G3-A3CJ-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000538928.1,ENST00000582678.1,ENST00000584529.1	chr17	61558451:61558549:61558926:61559099:61559826:61560050,	61558927	61559099	61558976	61558976	Frame_Shift_Del	C	-	p.S332fs
LIHC	TCGA-G3-A3CJ-01	ACE	ENST00000538928.1,ENST00000584529.1	chr17	61558926:61559099:61559826:61560050:61560820:61560919,	61559827	61560050	61559921	61559921	Frame_Shift_Del	C	-	p.P405fs
LIHC	TCGA-G3-A3CJ-01	ACE	ENST00000538928.1,ENST00000584529.1	chr17	61558926:61559099:61559826:61560050:61560820:61560919,	61559827	61560050	61559947	61559947	Frame_Shift_Del	C	-	p.N413fs
LIHC	TCGA-G3-A3CJ-01	ACE	ENST00000538928.1,ENST00000584529.1	chr17	61558926:61559099:61559826:61560050:61560820:61560919,	61559827	61560050	61560014	61560014	Frame_Shift_Del	A	-	p.K436fs
LIHC	TCGA-G3-A3CJ-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000582678.1	chr17	61559826:61560050:61560389:61560534:61560820:61560919,	61560390	61560534	61560426	61560426	Frame_Shift_Del	A	-	p.E460fs
LIHC	TCGA-G3-A3CJ-01	KCNH6	ENST00000583023.1	chr17	61620969:61621021:61621372:61621480:61621609:61621772,	61621373	61621480	61621459	61621459	Frame_Shift_Del	C	-	p.P774fs
LIHC	TCGA-G3-A3CJ-01	DCAF7	ENST00000582103.1	chr17	61662572:61662690:61666361:61666599:61671564:61671621,	61666362	61666599	61666420	61666420	Frame_Shift_Del	C	-	p.D305fs
LIHC	TCGA-G3-A3CJ-01	CCDC47	ENST00000403162.3,ENST00000225726.5,ENST00000582331.2,ENST00000582252.1	chr17	61833599:61833710:61833828:61833930:61838273:61838339,	61833829	61833930	61833865	61833865	Frame_Shift_Del	T	-	p.K267fs
LIHC	TCGA-G3-A3CJ-01	PSMC5	ENST00000584536.1,ENST00000582130.1	chr17	61906853:61906923:61907211:61907309:61907492:61907549,61906853:61906923:61907211:61907309:61907630:61907861,	61907212	61907309	61907264	61907264	Frame_Shift_Del	G	-	p.V73fs
LIHC	TCGA-G3-A3CJ-01	PSMC5	ENST00000375812.4,ENST00000310144.6,ENST00000578570.1,ENST00000579147.1,ENST00000580864.1,ENST00000585123.1,ENST00000581882.1,ENST00000585242.1,ENST00000581842.1,ENST00000584320.1	chr17	61907211:61907309:61907492:61907549:61907630:61907699,	61907493	61907549	61907529	61907529	Frame_Shift_Del	A	-	p.K101fs
LIHC	TCGA-G3-A3CJ-01	ERN1	ENST00000433197.3	chr17	62144030:62144292:62145549:62145651:62149340:62149456,	62145550	62145651	62145622	62145622	Frame_Shift_Del	T	-	p.T170fs
LIHC	TCGA-G3-A3CJ-01	TEX2	ENST00000258991.3,ENST00000583097.1,ENST00000584379.1	chr17	62232306:62232327:62238160:62238293:62248459:62248559,	62238161	62238293	62238189	62238189	Frame_Shift_Del	G	-	p.L933fs
LIHC	TCGA-G3-A3CJ-01	TEX2	ENST00000258991.3,ENST00000583097.1,ENST00000584379.1	chr17	62232306:62232327:62238160:62238293:62248459:62248559,	62238161	62238293	62238273	62238273	Frame_Shift_Del	T	-	p.M905fs
LIHC	TCGA-G3-A3CJ-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000581230.1,ENST00000578804.1,ENST00000583894.1,ENST00000577922.1,ENST00000581697.1,ENST00000540698.2	chr17	62499685:62499689:62499920:62499986:62500100:62500139,	62499921	62499986	62499972	62499972	Frame_Shift_Del	G	-	p.A152fs
LIHC	TCGA-G3-A3CJ-01	CEP95	ENST00000553956.2,ENST00000577960.1,ENST00000556440.2,ENST00000553412.1	chr17	62517519:62517645:62518819:62519013:62521887:62521952,	62518820	62519013	62518864	62518864	Frame_Shift_Del	G	-	p.G254fs
LIHC	TCGA-G3-A3CJ-01	SMURF2	ENST00000582081.1,ENST00000578386.1,ENST00000262435.9	chr17	62543717:62543919:62547701:62547822:62550973:62551111,	62547702	62547822	62547799	62547799	Frame_Shift_Del	A	-	p.L591fs
LIHC	TCGA-G3-A3CJ-01	SMURF2	ENST00000582081.1,ENST00000585301.1,ENST00000262435.9	chr17	62582203:62582288:62587201:62587267:62589557:62589691,	62587202	62587267	62587239	62587239	Frame_Shift_Del	C	-	p.G121fs
LIHC	TCGA-G3-A3CJ-01	LRRC37A3	ENST00000584306.1	chr17	62888646:62888718:62890766:62893772:62894479:62894577,	62890767	62893772	62892361	62892361	Frame_Shift_Del	G	-	p.Q340fs
LIHC	TCGA-G3-A3CJ-01	CEP112	ENST00000541355.1,ENST00000535342.2,ENST00000583358.1,ENST00000392769.2,ENST00000537949.1	chr17	64025986:64026141:64049853:64049997:64059080:64059194,	64049854	64049997	64049933	64049933	Frame_Shift_Del	T	-	p.N380fs
LIHC	TCGA-G3-A3CJ-01	APOH	ENST00000205948.6	chr17	64208156:64208306:64210570:64210768:64212905:64213082,	64210571	64210768	64210639	64210639	Frame_Shift_Del	T	-	p.K306fs
LIHC	TCGA-G3-A3CJ-01	APOH	ENST00000205948.6,ENST00000581797.1	chr17	64212908:64213085:64216671:64216860:64219815:64219891,	64216672	64216860	64216760	64216760	Frame_Shift_Del	A	-	p.F172fs
LIHC	TCGA-G3-A3CJ-01	APOH	ENST00000577982.1,ENST00000205948.6,ENST00000581797.1	chr17	64216731:64216860:64219815:64219892:64222145:64222242,	64219816	64219892	64219888	64219888	Frame_Shift_Del	A	-	p.Y115fs
LIHC	TCGA-G3-A3CJ-01	APOH	ENST00000577982.1,ENST00000205948.6,ENST00000581797.1	chr17	64219815:64219892:64222145:64222242:64224137:64224278,	64222146	64222242	64222159	64222159	Frame_Shift_Del	A	-	p.S109fs
LIHC	TCGA-G3-A3CJ-01	PRKCA	ENST00000284384.6,ENST00000413366.3	chr17	64685068:64685165:64728805:64728943:64731606:64731780,	64728806	64728943	64728820	64728820	Frame_Shift_Del	C	-	p.G311fs
LIHC	TCGA-G3-A3CJ-01	PRKCA	ENST00000413366.3	chr17	64770104:64770185:64782984:64783092:64784956:64785097,	64782985	64783092	64782991	64782991	Frame_Shift_Del	T	-	p.F538fs
LIHC	TCGA-G3-A3CJ-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584289.1,ENST00000584008.1	chr17	65343231:65343366:65343451:65343601:65344665:65344770,	65343452	65343601	65343459	65343459	Frame_Shift_Del	T	-	p.N218fs
LIHC	TCGA-G3-A3CJ-01	NOL11	ENST00000253247.4,ENST00000581375.1,ENST00000535137.1	chr17	65720224:65720309:65722575:65722764:65730478:65730555,	65722576	65722764	65722630	65722630	Frame_Shift_Del	A	-	p.E240fs
LIHC	TCGA-G3-A3CJ-01	NOL11	ENST00000253247.4,ENST00000581375.1,ENST00000535137.1	chr17	65720224:65720309:65722575:65722764:65730478:65730555,	65722576	65722764	65722650	65722650	Frame_Shift_Del	A	-	p.K247fs
LIHC	TCGA-G3-A3CJ-01	NOL11	ENST00000253247.4,ENST00000577687.1,ENST00000580833.1,ENST00000581375.1,ENST00000535137.1	chr17	65732781:65732870:65733186:65733261:65733623:65733733,	65733187	65733261	65733198	65733198	Frame_Shift_Del	A	-	p.R385fs
LIHC	TCGA-G3-A3CJ-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65900817:65900956:65905697:65905877:65906992:65909303,	65905698	65905877	65905759	65905759	Frame_Shift_Del	A	-	p.P1084fs
LIHC	TCGA-G3-A3CJ-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65900817:65900956:65905697:65905877:65906992:65909303,	65905698	65905877	65905819	65905819	Frame_Shift_Del	A	-	p.A1104fs
LIHC	TCGA-G3-A3CJ-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000582467.1,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65916215:65916259:65918955:65919106:65920662:65920705,	65918956	65919106	65919016	65919016	Frame_Shift_Del	A	-	p.E1999fs
LIHC	TCGA-G3-A3CJ-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000582467.1,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65925451:65925603:65928026:65928135:65936554:65936661,	65928027	65928135	65928098	65928098	Frame_Shift_Del	A	-	p.G2200fs
LIHC	TCGA-G3-A3CJ-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2,ENST00000580465.1	chr17	65936678:65936772:65940265:65940488:65941524:65941687,	65940266	65940488	65940341	65940341	Frame_Shift_Del	G	-	p.G2311fs
LIHC	TCGA-G3-A3CJ-01	ARSG	ENST00000448504.2,ENST00000452479.2,ENST00000582154.1	chr17	66391213:66391334:66397500:66397591:66416329:66416666,	66397501	66397591	66397512	66397512	Frame_Shift_Del	C	-	p.H408fs
LIHC	TCGA-G3-A3CJ-01	FAM20A	ENST00000226094.5,ENST00000592847.1	chr17	66537051:66537124:66538125:66538306:66538834:66538950,	66538126	66538306	66538161	66538161	Frame_Shift_Del	G	-	p.P358fs
LIHC	TCGA-G3-A3CJ-01	FAM20A	ENST00000592554.1,ENST00000590074.1,ENST00000226094.5,ENST00000592847.1	chr17	66548013:66548092:66550917:66550968:66551699:66551884,	66550918	66550968	66550936	66550936	Frame_Shift_Del	C	-	p.A208fs
LIHC	TCGA-G3-A3CJ-01	ABCA8	ENST00000269080.2,ENST00000541225.1,ENST00000430352.2,ENST00000586539.1	chr17	66924056:66924204:66925189:66925375:66925701:66925843,	66925190	66925375	66925214	66925214	Frame_Shift_Del	A	-	p.F367fs
LIHC	TCGA-G3-A3CJ-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	66981193:66981269:66982304:66982465:66985167:66985259,	66982305	66982465	66982418	66982418	Frame_Shift_Del	C	-	p.G1365fs
LIHC	TCGA-G3-A3CJ-01	ABCA9	ENST00000370732.2,ENST00000340001.4	chr17	66992035:66992155:67003899:67004013:67004202:67004376,	67003900	67004013	67003910	67003910	Frame_Shift_Del	A	-	p.F1143fs
LIHC	TCGA-G3-A3CJ-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67186498:67186618:67187316:67187456:67188703:67188794,	67187317	67187456	67187422	67187422	Frame_Shift_Del	T	-	p.I636fs
LIHC	TCGA-G3-A3CJ-01	ABCA10	ENST00000269081.4,ENST00000518929.1,ENST00000523419.1,ENST00000522406.1	chr17	67189633:67189753:67189954:67190130:67190525:67190636,	67189955	67190130	67190056	67190056	Frame_Shift_Del	A	-	p.C474fs
LIHC	TCGA-G3-A3CJ-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000591234.1,ENST00000586995.1,ENST00000588877.1	chr17	67243516:67243785:67244402:67244458:67246045:67246125,	67244403	67244458	67244445	67244445	Frame_Shift_Del	A	-	p.F1593fs
LIHC	TCGA-G3-A3CJ-01	SLC39A11	ENST00000583146.1,ENST00000580557.1,ENST00000255559.3,ENST00000579732.1,ENST00000542342.2	chr17	70943890:70944014:71027694:71027853:71080946:71080985,	71027695	71027853	71027728	71027728	Frame_Shift_Del	A	-	p.F91fs
LIHC	TCGA-G3-A3CJ-01	SLC39A11	ENST00000583146.1,ENST00000580557.1,ENST00000255559.3,ENST00000579732.1,ENST00000542342.2	chr17	70943890:70944014:71027694:71027853:71080946:71080985,	71027695	71027853	71027816	71027816	Frame_Shift_Del	G	-	p.P62fs
LIHC	TCGA-G3-A3CJ-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223357	71223357	Frame_Shift_Del	G	-	p.Q90fs
LIHC	TCGA-G3-A3CJ-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71231752	71231752	Frame_Shift_Del	C	-	p.S44fs
LIHC	TCGA-G3-A3CJ-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232243	71232243	Frame_Shift_Del	A	-	p.K208fs
LIHC	TCGA-G3-A3CJ-01	SDK2	ENST00000479356.1,ENST00000388726.3,ENST00000392650.3,ENST00000424778.1,ENST00000410094.1	chr17	71357822:71357984:71361396:71361534:71364545:71364732,	71361397	71361534	71361521	71361521	Frame_Shift_Del	G	-	p.P1727fs
LIHC	TCGA-G3-A3CJ-01	TTYH2	ENST00000526858.1,ENST00000529107.1,ENST00000269346.4,ENST00000441391.2	chr17	72248372:72248515:72249219:72249405:72249893:72249972,	72249220	72249405	72249293	72249293	Frame_Shift_Del	C	-	p.P125fs
LIHC	TCGA-G3-A3CJ-01	DNAI2	ENST00000579490.1,ENST00000307504.5,ENST00000311014.6,ENST00000579055.1,ENST00000582036.1,ENST00000446837.2	chr17	72285732:72285875:72287158:72287272:72295856:72295996,	72287159	72287272	72287223	72287223	Frame_Shift_Del	C	-	p.N282fs
LIHC	TCGA-G3-A3CJ-01	DNAI2	ENST00000579490.1,ENST00000307504.5,ENST00000311014.6,ENST00000579055.1,ENST00000582036.1,ENST00000446837.2	chr17	72285732:72285875:72287158:72287272:72295856:72295996,	72287159	72287272	72287247	72287247	Frame_Shift_Del	G	-	p.L290fs
LIHC	TCGA-G3-A3CJ-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436854	72436854	Frame_Shift_Del	G	-	p.Q358fs
LIHC	TCGA-G3-A3CJ-01	GRIN2C	ENST00000293190.5,ENST00000347612.4	chr17	72846694:72846906:72847715:72847830:72848151:72848750,	72847716	72847830	72847742	72847742	Frame_Shift_Del	G	-	p.L363fs
LIHC	TCGA-G3-A3CJ-01	HID1	ENST00000530857.1,ENST00000425042.2,ENST00000534480.1	chr17	72955975:72956032:72956120:72956343:72957967:72958084,	72956121	72956343	72956166	72956166	Frame_Shift_Del	G	-	p.P302fs
LIHC	TCGA-G3-A3CJ-01	NT5C	ENST00000579082.1,ENST00000578337.1,ENST00000582744.1	chr17	73126882:73126962:73127059:73127200:73127275:73127353,	73127060	73127200	73127127	73127127	Frame_Shift_Del	G	-	p.R31fs
LIHC	TCGA-G3-A3CJ-01	NT5C	ENST00000580758.1	chr17	73126882:73126962:73127059:73127176:73127275:73127353,	73127060	73127176	73127127	73127127	Frame_Shift_Del	G	-	p.R31fs
LIHC	TCGA-G3-A3CJ-01	GGA3	ENST00000582717.1,ENST00000538886.1,ENST00000245541.6,ENST00000537584.2,ENST00000584978.1,ENST00000582486.1,ENST00000582200.1,ENST00000578348.1,ENST00000351904.7	chr17	73234994:73235164:73235455:73235652:73235869:73236189,	73235456	73235652	73235474	73235474	Frame_Shift_Del	G	-	p.L588fs
LIHC	TCGA-G3-A3CJ-01	LLGL2	ENST00000392550.3,ENST00000545227.2,ENST00000577200.1,ENST00000167462.5	chr17	73559854:73559887:73560433:73560588:73564556:73564774,	73560434	73560588	73560534	73560534	Frame_Shift_Del	T	-	p.F328fs
LIHC	TCGA-G3-A3CJ-01	LLGL2	ENST00000392550.3,ENST00000578638.1,ENST00000545227.2,ENST00000577500.1,ENST00000577200.1,ENST00000578719.1,ENST00000167462.5	chr17	73565301:73565406:73566043:73566336:73566428:73566517,	73566044	73566336	73566221	73566221	Frame_Shift_Del	C	-	p.P588fs
LIHC	TCGA-G3-A3CJ-01	RECQL5	ENST00000580707.1,ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73626858:73626917:73627053:73627090:73627229:73627329,	73627054	73627090	73627056	73627056	Frame_Shift_Del	G	-	p.P528fs
LIHC	TCGA-G3-A3CJ-01	UNK	ENST00000293218.3,ENST00000589666.1,ENST00000586217.1	chr17	73808535:73808666:73809158:73809294:73809841:73809959,	73809159	73809294	73809274	73809274	Frame_Shift_Del	C	-	p.S322fs
LIHC	TCGA-G3-A3CJ-01	UNK	ENST00000293218.3,ENST00000589666.1	chr17	73809841:73809959:73811249:73811334:73812850:73812954,	73811250	73811334	73811298	73811298	Frame_Shift_Del	C	-	p.P385fs
LIHC	TCGA-G3-A3CJ-01	UNC13D	ENST00000412096.2,ENST00000207549.4	chr17	73824154:73824167:73824867:73825064:73826108:73826228,	73824868	73825064	73824988	73824988	Frame_Shift_Del	C	-	p.A1011fs
LIHC	TCGA-G3-A3CJ-01	TRIM65	ENST00000269383.3	chr17	73887357:73887428:73888091:73888266:73888347:73888384,73887893:73887959:73888091:73888266:73888347:73888384,	73888092	73888266	73888165	73888165	Frame_Shift_Del	C	-	p.R282fs
LIHC	TCGA-G3-A3CJ-01	ACOX1	ENST00000293217.5,ENST00000572047.1,ENST00000573078.1,ENST00000537812.1	chr17	73951988:73952028:73953539:73953647:73969705:73969866,73951988:73952028:73953539:73953647:73956295:73956456,	73953540	73953647	73953600	73953600	Frame_Shift_Del	T	-	p.T122fs
LIHC	TCGA-G3-A3CJ-01	ACOX1	ENST00000591857.1	chr17	73951988:73952028:73953501:73953647:73956295:73956456,	73953502	73953647	73953600	73953600	Frame_Shift_Del	T	-	p.T122fs
LIHC	TCGA-G3-A3CJ-01	CDK3	ENST00000586261.1,ENST00000425876.2,ENST00000448471.1	chr17	73998328:73998499:73998591:73998693:73999275:73999447,	73998592	73998693	73998614	73998614	Frame_Shift_Del	C	-	p.A170fs
LIHC	TCGA-G3-A3CJ-01	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74014994:74015141:74015608:74015734:74017548:74017644,	74015609	74015734	74015643	74015643	Frame_Shift_Del	G	-	p.P368fs
LIHC	TCGA-G3-A3CJ-01	RNF157	ENST00000591355.1,ENST00000592869.1,ENST00000269391.6	chr17	74151332:74151398:74151642:74151815:74152290:74152337,	74151643	74151815	74151812	74151812	Frame_Shift_Del	G	-	p.P510fs
LIHC	TCGA-G3-A3CJ-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74289875	74289875	Frame_Shift_Del	C	-	p.G145fs
LIHC	TCGA-G3-A3CJ-01	QRICH2	ENST00000524722.1	chr17	74300495:74300606:74300962:74301022:74303545:74303646,	74300963	74301022	74300981	74300981	Frame_Shift_Del	T	-	p.K26fs
LIHC	TCGA-G3-A3CJ-01	RHBDF2	ENST00000389760.4,ENST00000587640.1,ENST00000591885.1,ENST00000313080.4	chr17	74472911:74473106:74473261:74473380:74473738:74473813,	74473262	74473380	74473292	74473292	Frame_Shift_Del	G	-	p.P297fs
LIHC	TCGA-G3-A3CJ-01	CYGB	ENST00000590175.1,ENST00000589145.1,ENST00000293230.5	chr17	74524615:74524693:74527060:74527224:74527541:74527773,	74527061	74527224	74527212	74527212	Frame_Shift_Del	C	-	p.V130fs
LIHC	TCGA-G3-A3CJ-01	ST6GALNAC1	ENST00000592042.1,ENST00000156626.7,ENST00000590784.1	chr17	74622132:74622177:74622370:74622474:74622732:74622871,	74622371	74622474	74622386	74622386	Frame_Shift_Del	T	-	p.N467fs
LIHC	TCGA-G3-A3CJ-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000301618.4,ENST00000428789.2,ENST00000565043.1	chr17	74868932:74869045:74878232:74878380:74898636:74898752,	74878233	74878380	74878237	74878237	Frame_Shift_Del	G	-	p.M62fs
LIHC	TCGA-G3-A3CJ-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189626	75189626	Frame_Shift_Del	A	-	p.K158fs
LIHC	TCGA-G3-A3CJ-01	SEPT9	ENST00000329047.8,ENST00000590294.1	chr17	75303222:75303279:75398140:75398785:75478225:75478417,75369418:75369634:75398140:75398785:75478225:75478417,75277532:75277636:75398140:75398785:75478225:75478417,75316394:75316430:75398140:75398785:75478225:75478417,	75398141	75398785	75398212	75398212	Frame_Shift_Del	C	-	p.P32fs
LIHC	TCGA-G3-A3CJ-01	SEPT9	ENST00000329047.8,ENST00000590294.1	chr17	75303222:75303279:75398140:75398785:75478225:75478417,75369418:75369634:75398140:75398785:75478225:75478417,75277532:75277636:75398140:75398785:75478225:75478417,75316394:75316430:75398140:75398785:75478225:75478417,	75398141	75398785	75398355	75398355	Frame_Shift_Del	C	-	p.G79fs
LIHC	TCGA-G3-A3CJ-01	SEPT9	ENST00000329047.8,ENST00000590294.1	chr17	75303222:75303279:75398140:75398785:75478225:75478417,75369418:75369634:75398140:75398785:75478225:75478417,75277532:75277636:75398140:75398785:75478225:75478417,75316394:75316430:75398140:75398785:75478225:75478417,	75398141	75398785	75398678	75398678	Frame_Shift_Del	C	-	p.A187fs
LIHC	TCGA-G3-A3CJ-01	SEPT9	ENST00000590059.1	chr17	75369418:75369634:75398637:75398785:75478225:75478417,	75398638	75398785	75398678	75398678	Frame_Shift_Del	C	-	p.A187fs
LIHC	TCGA-G3-A3CJ-01	AFMID	ENST00000327898.5	chr17	76200908:76200981:76202026:76202131:76202991:76203133,76198801:76198832:76202026:76202131:76202991:76203133,76201683:76201819:76202026:76202131:76202991:76203133,76201520:76201599:76202026:76202131:76202991:76203133,76201683:76201834:76202026:76202131:76202991:76203133,	76202027	76202131	76202084	76202084	Frame_Shift_Del	T	-	p.F280fs
LIHC	TCGA-G3-A3CJ-01	DNAH17	ENST00000586052.1,ENST00000585328.1,ENST00000591369.1,ENST00000590227.1	chr17	76430109:76430301:76433722:76433950:76435171:76435299,	76433723	76433950	76433771	76433771	Frame_Shift_Del	G	-	p.P3989fs
LIHC	TCGA-G3-A3CJ-01	DNAH17	ENST00000585328.1	chr17	76521090:76521243:76522732:76522819:76522961:76523078,	76522733	76522819	76522776	76522776	Frame_Shift_Del	G	-	p.P1223fs
LIHC	TCGA-G3-A3CJ-01	CYTH1	ENST00000585509.1,ENST00000587308.1,ENST00000361101.4,ENST00000586043.1,ENST00000446868.3,ENST00000590300.1,ENST00000589297.1,ENST00000591455.1,ENST00000589768.1	chr17	76698203:76698322:76698619:76698686:76704278:76704341,	76698620	76698686	76698641	76698641	Frame_Shift_Del	T	-	p.K13fs
LIHC	TCGA-G3-A3CJ-01	LGALS3BP	ENST00000591274.1,ENST00000589527.1,ENST00000589775.2,ENST00000591778.1,ENST00000262776.3,ENST00000585407.1,ENST00000588198.1	chr17	76970879:76970901:76972046:76972238:76973221:76973296,	76972047	76972238	76972202	76972202	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-G3-A3CJ-01	ENGASE	ENST00000579016.1,ENST00000300682.10,ENST00000584568.1,ENST00000577783.2	chr17	77079167:77079205:77079563:77079672:77079842:77079935,	77079564	77079672	77079569	77079569	Frame_Shift_Del	G	-	p.W383fs
LIHC	TCGA-G3-A3CJ-01	TBC1D16	ENST00000570373.1,ENST00000572862.1,ENST00000574241.2,ENST00000340848.7,ENST00000310924.2,ENST00000574427.1,ENST00000576768.1,ENST00000573782.1	chr17	77921493:77921630:77922670:77922805:77923515:77923622,	77922671	77922805	77922699	77922699	Frame_Shift_Del	C	-	p.E505fs
LIHC	TCGA-G3-A3CJ-01	EIF4A3	ENST00000576573.1,ENST00000269349.3	chr17	78109802:78109930:78110026:78110134:78111184:78111300,	78110027	78110134	78110098	78110098	Frame_Shift_Del	C	-	p.G340fs
LIHC	TCGA-G3-A3CJ-01	SLC26A11	ENST00000546047.2	chr17	78194267:78194295:78195216:78195593:78196453:78196646,	78195217	78195593	78195490	78195490	Frame_Shift_Del	C	-	p.S44fs
LIHC	TCGA-G3-A3CJ-01	SLC26A11	ENST00000572725.1	chr17	78194267:78194295:78195346:78195593:78196453:78196646,	78195347	78195593	78195490	78195490	Frame_Shift_Del	C	-	p.S44fs
LIHC	TCGA-G3-A3CJ-01	SLC26A11	ENST00000571602.1	chr17	78195554:78195593:78196453:78196646:78197050:78197071,78195554:78195593:78196453:78196646:78196978:78197054,	78196454	78196646	78196630	78196630	Frame_Shift_Del	G	-	p.M137fs
LIHC	TCGA-G3-A3CJ-01	BAIAP2	ENST00000392411.3,ENST00000572329.1,ENST00000572498.1,ENST00000321300.6,ENST00000575712.1,ENST00000435091.3,ENST00000576225.1,ENST00000321280.7,ENST00000416299.2,ENST00000575245.1,ENST00000428708.2	chr17	79079877:79079946:79080544:79080707:79082274:79082309,	79080545	79080707	79080609	79080609	Frame_Shift_Del	C	-	p.P469fs
LIHC	TCGA-G3-A3CJ-01	AATK	ENST00000374792.2,ENST00000417379.1,ENST00000326724.4	chr17	79096334:79096623:79096993:79097143:79098526:79098621,	79096994	79097143	79097052	79097052	Frame_Shift_Del	G	-	p.R352fs
LIHC	TCGA-G3-A3CJ-01	SLC38A10	ENST00000288439.5	chr17	79258649:79258695:79263490:79263608:79268622:79268714,	79263491	79263608	79263578	79263578	Frame_Shift_Del	C	-	p.V44fs
LIHC	TCGA-G3-A3CJ-01	NPLOC4	ENST00000331134.6,ENST00000374747.5,ENST00000574344.1	chr17	79573716:79573840:79575753:79575848:79580343:79580373,79573716:79573840:79575753:79575848:79577235:79577284,	79575754	79575848	79575761	79575761	Frame_Shift_Del	C	-	p.A175fs
LIHC	TCGA-G3-A3CJ-01	NPLOC4	ENST00000574897.1,ENST00000539314.1	chr17	79577235:79577284:79580343:79580520:79589191:79589304,79575753:79575848:79580343:79580520:79589191:79589304,	79580344	79580520	79580443	79580443	Frame_Shift_Del	C	-	p.G96fs
LIHC	TCGA-G3-A3CJ-01	NPLOC4	ENST00000374747.5,ENST00000574897.1,ENST00000539314.1	chr17	79589191:79589304:79596750:79596831:79603941:79604086,	79596751	79596831	79596758	79596758	Frame_Shift_Del	A	-	p.L30fs
LIHC	TCGA-G3-A3CJ-01	HGS	ENST00000576498.1,ENST00000572392.1,ENST00000329138.4,ENST00000576393.1	chr17	79651062:79651133:79652634:79652719:79653341:79653417,	79652635	79652719	79652680	79652680	Frame_Shift_Del	T	-	p.I28fs
LIHC	TCGA-G3-A3CJ-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79803535:79803618:79803746:79803867:79804304:79804383,	79803747	79803867	79803764	79803764	Frame_Shift_Del	T	-	p.N387fs
LIHC	TCGA-G3-A3CJ-01	ANAPC11	ENST00000357385.3	chr17	79852342:79852462:79857117:79857418:79857795:79857816,	79857118	79857418	79857223	79857223	Frame_Shift_Del	C	-	p.S72fs
LIHC	TCGA-G3-A3CJ-01	PYCR1	ENST00000403172.4	chr17	79891231:79891252:79892201:79892365:79892528:79892621,79891231:79891252:79892201:79892365:79892801:79892858,	79892202	79892365	79892290	79892290	Frame_Shift_Del	C	-	p.A237fs
LIHC	TCGA-G3-A3CJ-01	PYCR1	ENST00000577756.1,ENST00000581271.1,ENST00000579698.1,ENST00000403172.4,ENST00000584848.1,ENST00000585244.1,ENST00000337943.5,ENST00000405481.4,ENST00000585215.1,ENST00000583564.1,ENST00000402252.2	chr17	79893278:79893392:79893998:79894069:79894623:79894651,	79893999	79894069	79894033	79894033	Frame_Shift_Del	G	-	p.P35fs
LIHC	TCGA-G3-A3CJ-01	ASPSCR1	ENST00000344865.6,ENST00000582355.2,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000306739.4	chr17	79953867:79953941:79954295:79954722:79966912:79966915,	79954296	79954722	79954558	79954558	Frame_Shift_Del	G	-	p.G257fs
LIHC	TCGA-G3-A3CJ-01	DCXR	ENST00000579334.1	chr17	79994596:79994639:79994734:79995423:79995506:79995553,	79994735	79995423	79994812	79994812	Frame_Shift_Del	G	-	p.P76fs
LIHC	TCGA-G3-A3CJ-01	DCXR	ENST00000577712.1	chr17	79994596:79994639:79994734:79994889:79995506:79995553,	79994735	79994889	79994812	79994812	Frame_Shift_Del	G	-	p.P76fs
LIHC	TCGA-G3-A3CJ-01	DCXR	ENST00000579334.1	chr17	79994596:79994639:79994734:79995423:79995506:79995553,	79994735	79995423	79995406	79995406	Frame_Shift_Del	C	-	p.V24fs
LIHC	TCGA-G3-A3CJ-01	DCXR	ENST00000585164.2,ENST00000582900.1	chr17	79994799:79994889:79995325:79995417:79995506:79995556,	79995326	79995417	79995406	79995406	Frame_Shift_Del	C	-	p.V24fs
LIHC	TCGA-G3-A3CJ-01	DCXR	ENST00000580750.1,ENST00000578885.1,ENST00000581584.1,ENST00000306869.2	chr17	79994799:79994889:79995325:79995423:79995506:79995556,	79995326	79995423	79995406	79995406	Frame_Shift_Del	C	-	p.V24fs
LIHC	TCGA-G3-A3CJ-01	FASN	ENST00000306749.2	chr17	80039039:80039228:80039476:80039719:80039884:80040036,	80039477	80039719	80039556	80039556	Frame_Shift_Del	A	-	p.F2109fs
LIHC	TCGA-G3-A3CJ-01	FASN	ENST00000306749.2	chr17	80040789:80040991:80041077:80041301:80041392:80041515,	80041078	80041301	80041260	80041260	Frame_Shift_Del	G	-	p.L1796fs
LIHC	TCGA-G3-A3CJ-01	FASN	ENST00000306749.2	chr17	80046844:80047048:80047125:80047260:80047507:80047602,	80047126	80047260	80047148	80047148	Frame_Shift_Del	G	-	p.P693fs
LIHC	TCGA-G3-A3CJ-01	CCDC57	ENST00000419322.2	chr17	80091948:80092070:80109435:80109649:80115623:80115824,	80109436	80109649	80109568	80109568	Frame_Shift_Del	G	-	p.Q21fs
LIHC	TCGA-G3-A3CJ-01	OGFOD3	ENST00000329197.5,ENST00000313056.5,ENST00000577495.1	chr17	80367243:80367286:80369330:80369406:80373281:80373392,80367243:80367286:80369330:80369406:80373273:80373503,	80369331	80369406	80369395	80369395	Frame_Shift_Del	G	-	p.R106fs
LIHC	TCGA-G3-A3CJ-01	NARF	ENST00000577410.1,ENST00000582907.1,ENST00000412079.2,ENST00000581202.1,ENST00000309794.11,ENST00000577812.1,ENST00000457415.3,ENST00000579198.1,ENST00000390006.4,ENST00000584411.1,ENST00000581743.1,ENST00000374611.5,ENST00000580296.1,ENST00000577432.1,ENST00000581795.1	chr17	80417875:80417948:80422162:80422306:80426639:80426663,	80422163	80422306	80422266	80422266	Frame_Shift_Del	A	-	p.Q12fs
LIHC	TCGA-G3-A3CJ-01	NARF	ENST00000577410.1,ENST00000309794.11,ENST00000577812.1,ENST00000345415.7,ENST00000390006.4,ENST00000374611.5	chr17	80430439:80430574:80436675:80436794:80438957:80438969,	80436676	80436794	80436742	80436742	Frame_Shift_Del	C	-	p.S137fs
LIHC	TCGA-G3-A3CJ-01	FOXK2	ENST00000473637.2,ENST00000335255.5	chr17	80540650:80540810:80541888:80542064:80543779:80543919,	80541889	80542064	80541951	80541951	Frame_Shift_Del	C	-	p.T389fs
LIHC	TCGA-G3-A3CJ-01	WDR45B	ENST00000392325.4,ENST00000574828.1,ENST00000572583.1	chr17	80585079:80585167:80588796:80588898:80601824:80601899,	80588797	80588898	80588820	80588820	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-G3-A3CJ-01	B3GNTL1	ENST00000571954.1,ENST00000320865.3	chr17	80923526:80923622:80962990:80963086:80972329:80972395,	80962991	80963086	80962999	80962999	Frame_Shift_Del	G	-	p.L55fs
LIHC	TCGA-G3-A3CJ-01	COLEC12	ENST00000400256.3	chr18	333006:333143:334741:335230:346294:347341,	334742	335230	334758	334758	Frame_Shift_Del	T	-	p.P600fs
LIHC	TCGA-G3-A3CJ-01	TYMS	ENST00000323250.5,ENST00000323274.10,ENST00000581920.1	chr18	669071:669173:670691:670867:671379:671451,	670692	670867	670827	670827	Frame_Shift_Del	C	-	p.A231fs
LIHC	TCGA-G3-A3CJ-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000581711.1,ENST00000577880.1	chr18	2707804:2707918:2718155:2718233:2718312:2718432,	2718156	2718233	2718224	2718224	Frame_Shift_Del	A	-	p.K778fs
LIHC	TCGA-G3-A3CJ-01	EMILIN2	ENST00000254528.3	chr18	2884961:2885137:2890558:2892484:2906780:2907083,	2890559	2892484	2891558	2891558	Frame_Shift_Del	C	-	p.A478fs
LIHC	TCGA-G3-A3CJ-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3100156:3100201:3100317:3100424:3102471:3102628,	3100318	3100424	3100397	3100397	Frame_Shift_Del	C	-	p.G1201fs
LIHC	TCGA-G3-A3CJ-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6171826:6171941:6213147:6213258:6215748:6215834,	6213148	6213258	6213199	6213199	Frame_Shift_Del	G	-	p.P310fs
LIHC	TCGA-G3-A3CJ-01	PTPRM	ENST00000444013.1,ENST00000332175.8,ENST00000400053.4	chr18	8244055:8244207:8247842:8247917:8253224:8253412,	8247843	8247917	8247872	8247872	Frame_Shift_Del	A	-	p.K828fs
LIHC	TCGA-G3-A3CJ-01	PTPRM	ENST00000444013.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000577827.1,ENST00000400060.4	chr18	8387069:8387233:8394473:8394609:8406106:8406160,	8394474	8394609	8394556	8394556	Frame_Shift_Del	T	-	p.F1418fs
LIHC	TCGA-G3-A3CJ-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254634	9254634	Frame_Shift_Del	A	-	p.K435fs
LIHC	TCGA-G3-A3CJ-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255790	9255790	Frame_Shift_Del	A	-	p.E819fs
LIHC	TCGA-G3-A3CJ-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9254208:9258929:9263787:9263886:9275521:9275665,	9263788	9263886	9263828	9263828	Frame_Shift_Del	T	-	p.L1879fs
LIHC	TCGA-G3-A3CJ-01	TWSG1	ENST00000262120.5	chr18	9359969:9360069:9396277:9396544:9399343:9400815,	9396278	9396544	9396321	9396321	Frame_Shift_Del	A	-	p.S89fs
LIHC	TCGA-G3-A3CJ-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9570154:9570681:9577061:9577189:9583114:9583273,	9577062	9577189	9577142	9577142	Frame_Shift_Del	A	-	p.F322fs
LIHC	TCGA-G3-A3CJ-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9570154:9570681:9577061:9577189:9583114:9583273,	9577062	9577189	9577172	9577172	Frame_Shift_Del	A	-	p.F312fs
LIHC	TCGA-G3-A3CJ-01	APCDD1	ENST00000355285.5	chr18	10472003:10472058:10485458:10485780:10487586:10487660,	10485459	10485780	10485692	10485692	Frame_Shift_Del	C	-	p.H336fs
LIHC	TCGA-G3-A3CJ-01	NAPG	ENST00000582472.2,ENST00000582978.1,ENST00000322897.6	chr18	10530766:10530834:10532707:10532792:10533532:10533550,	10532708	10532792	10532774	10532774	Frame_Shift_Del	C	-	p.A64fs
LIHC	TCGA-G3-A3CJ-01	MPPE1	ENST00000309976.9,ENST00000317235.7	chr18	11885027:11885042:11885674:11885815:11886497:11886620,11884488:11884626:11885674:11885815:11886497:11886620,11884488:11884626:11885674:11885815:11886915:11887024,	11885675	11885815	11885742	11885742	Frame_Shift_Del	C	-	p.G314fs
LIHC	TCGA-G3-A3CJ-01	MPPE1	ENST00000592306.1	chr18	11884488:11884626:11885674:11885911:11886497:11886620,	11885675	11885911	11885742	11885742	Frame_Shift_Del	C	-	p.G314fs
LIHC	TCGA-G3-A3CJ-01	MPPE1	ENST00000344987.7	chr18	11885758:11885815:11886497:11886620:11886915:11887024,	11886498	11886620	11886544	11886544	Frame_Shift_Del	G	-	p.P274fs
LIHC	TCGA-G3-A3CJ-01	MPPE1	ENST00000592894.1	chr18	11885758:11885815:11886497:11886777:11886915:11887024,	11886498	11886777	11886544	11886544	Frame_Shift_Del	G	-	p.P274fs
LIHC	TCGA-G3-A3CJ-01	SPIRE1	ENST00000410092.3,ENST00000449797.1,ENST00000409402.4,ENST00000462226.1,ENST00000497844.2,ENST00000453447.2,ENST00000383356.2	chr18	12535476:12535600:12546672:12546903:12635060:12635095,	12546673	12546903	12546819	12546819	Frame_Shift_Del	G	-	p.L153fs
LIHC	TCGA-G3-A3CJ-01	PSMG2	ENST00000317615.6,ENST00000585331.2,ENST00000586445.1,ENST00000590217.1	chr18	12718515:12718634:12720508:12720682:12724497:12724519,	12720509	12720682	12720592	12720592	Frame_Shift_Del	A	-	p.E164fs
LIHC	TCGA-G3-A3CJ-01	PSMG2	ENST00000317615.6,ENST00000585331.2	chr18	12720508:12720682:12724497:12724618:12725437:12725657,	12724498	12724618	12724558	12724558	Frame_Shift_Del	C	-	p.I214fs
LIHC	TCGA-G3-A3CJ-01	PTPN2	ENST00000587703.1,ENST00000591115.1,ENST00000327283.3	chr18	12785683:12785843:12794382:12794484:12801968:12802150,	12794383	12794484	12794390	12794390	Frame_Shift_Del	T	-	p.R379fs
LIHC	TCGA-G3-A3CJ-01	CEP192	ENST00000511820.2,ENST00000510237.1,ENST00000506447.1,ENST00000513432.1,ENST00000430049.2,ENST00000325971.8,ENST00000589596.1	chr18	13040828:13040955:13042202:13042333:13048857:13049680,	13042203	13042333	13042260	13042260	Frame_Shift_Del	T	-	p.V665fs
LIHC	TCGA-G3-A3CJ-01	LDLRAD4	ENST00000399848.3,ENST00000361205.4,ENST00000587905.1,ENST00000359446.5	chr18	13387339:13387761:13438242:13438383:13621115:13621142,	13438243	13438383	13438317	13438317	Frame_Shift_Del	G	-	p.G39fs
LIHC	TCGA-G3-A3CJ-01	FAM210A	ENST00000592976.1,ENST00000402563.1	chr18	13666492:13666712:13681603:13682104:13726327:13726504,13671910:13671972:13681603:13682104:13687741:13687881,13671920:13671972:13681603:13682104:13726327:13726504,	13681604	13682104	13681751	13681751	Frame_Shift_Del	T	-	p.K109fs
LIHC	TCGA-G3-A3CJ-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629105	18629105	Frame_Shift_Del	A	-	p.F121fs
LIHC	TCGA-G3-A3CJ-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000584446.1,ENST00000580732.2,ENST00000578368.1,ENST00000400483.4,ENST00000431264.1	chr18	18964166:18964364:18975345:18975522:18981110:18981287,	18975346	18975522	18975428	18975428	Frame_Shift_Del	G	-	p.V146fs
LIHC	TCGA-G3-A3CJ-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000578955.1,ENST00000580732.2,ENST00000400483.4	chr18	19057124:19057317:19065580:19065714:19069972:19070192,	19065581	19065714	19065658	19065658	Frame_Shift_Del	C	-	p.S878fs
LIHC	TCGA-G3-A3CJ-01	GREB1L	ENST00000424526.1,ENST00000269218.6,ENST00000580732.2,ENST00000400483.4	chr18	19098133:19098195:19100648:19100784:19102618:19102782,	19100649	19100784	19100709	19100709	Frame_Shift_Del	T	-	p.F1846fs
LIHC	TCGA-G3-A3CJ-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19109263:19110451:19112433:19112621:19116002:19116146,	19112434	19112621	19112547	19112547	Frame_Shift_Del	T	-	p.K754fs
LIHC	TCGA-G3-A3CJ-01	ESCO1	ENST00000269214.5	chr18	19116002:19116146:19119880:19119970:19140819:19140951,	19119881	19119970	19119922	19119922	Frame_Shift_Del	T	-	p.I668fs
LIHC	TCGA-G3-A3CJ-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153293	19153293	Frame_Shift_Del	A	-	p.F504fs
LIHC	TCGA-G3-A3CJ-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153538	19153538	Frame_Shift_Del	A	-	p.S423fs
LIHC	TCGA-G3-A3CJ-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154487	19154487	Frame_Shift_Del	T	-	p.K106fs
LIHC	TCGA-G3-A3CJ-01	ABHD3	ENST00000578270.1,ENST00000580981.1,ENST00000289119.2,ENST00000577564.1	chr18	19231653:19231724:19236821:19236987:19237064:19237113,	19236822	19236987	19236940	19236940	Frame_Shift_Del	A	-	p.F118fs
LIHC	TCGA-G3-A3CJ-01	RBBP8	ENST00000585177.1,ENST00000399725.2,ENST00000399722.2,ENST00000327155.5,ENST00000399721.2,ENST00000360790.5	chr18	20562180:20562356:20564848:20564953:20569183:20569281,	20564849	20564953	20564906	20564906	Frame_Shift_Del	A	-	p.E221fs
LIHC	TCGA-G3-A3CJ-01	NPC1	ENST00000540608.1,ENST00000269228.5	chr18	21140194:21140444:21141323:21141491:21148786:21148962,	21141324	21141491	21141327	21141327	Frame_Shift_Del	A	-	p.S210fs
LIHC	TCGA-G3-A3CJ-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21736913	21736913	Frame_Shift_Del	A	-	p.E385fs
LIHC	TCGA-G3-A3CJ-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806011	22806011	Frame_Shift_Del	C	-	p.G625fs
LIHC	TCGA-G3-A3CJ-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806368	22806368	Frame_Shift_Del	G	-	p.P505fs
LIHC	TCGA-G3-A3CJ-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807586	22807586	Frame_Shift_Del	G	-	p.P99fs
LIHC	TCGA-G3-A3CJ-01	KCTD1	ENST00000417602.1,ENST00000317932.7,ENST00000580059.1,ENST00000580191.1,ENST00000408011.3,ENST00000580638.1,ENST00000579973.1	chr18	24035855:24035865:24039583:24039889:24056478:24056623,	24039584	24039889	24039620	24039620	Frame_Shift_Del	A	-	p.F801fs
LIHC	TCGA-G3-A3CJ-01	CHST9	ENST00000581714.1,ENST00000580774.1,ENST00000284224.8	chr18	24604079:24604121:24628428:24628467:24722652:24722869,	24628429	24628467	24628439	24628439	Frame_Shift_Del	T	-	p.K50fs
LIHC	TCGA-G3-A3CJ-01	DSG1	ENST00000257192.4	chr18	28911663:28911830:28913551:28913686:28913979:28914165,	28913552	28913686	28913639	28913639	Frame_Shift_Del	A	-	p.K258fs
LIHC	TCGA-G3-A3CJ-01	B4GALT6	ENST00000237019.7	chr18	29225317:29225442:29237938:29238052:29246218:29246335,29225317:29225442:29237938:29238052:29264274:29264467,	29237939	29238052	29237957	29237957	Frame_Shift_Del	C	-	p.E110fs
LIHC	TCGA-G3-A3CJ-01	TRAPPC8	ENST00000582513.1,ENST00000580104.1	chr18	29497540:29497630:29511291:29511486:29522570:29522856,	29511292	29511486	29511444	29511444	Frame_Shift_Del	T	-	p.N67fs
LIHC	TCGA-G3-A3CJ-01	RNF125	ENST00000580863.1,ENST00000217740.3,ENST00000583384.1	chr18	29625604:29625695:29645864:29645972:29648260:29648391,	29645865	29645972	29645889	29645889	Frame_Shift_Del	C	-	p.P177fs
LIHC	TCGA-G3-A3CJ-01	RNF138	ENST00000577999.1	chr18	29704696:29704808:29706689:29706763:29709081:29709265,	29706690	29706763	29706743	29706743	Frame_Shift_Del	T	-	p.F217fs
LIHC	TCGA-G3-A3CJ-01	RNF138	ENST00000257190.5,ENST00000261593.3	chr18	29704696:29704808:29706655:29706763:29709081:29709265,	29706656	29706763	29706743	29706743	Frame_Shift_Del	T	-	p.F217fs
LIHC	TCGA-G3-A3CJ-01	CCDC178	ENST00000383096.3,ENST00000579947.1,ENST00000300227.8,ENST00000403303.1	chr18	30554510:30554645:30672724:30672874:30791859:30792019,	30672725	30672874	30672846	30672846	Frame_Shift_Del	T	-	p.N756fs
LIHC	TCGA-G3-A3CJ-01	CCDC178	ENST00000583930.1,ENST00000406524.2,ENST00000383096.3,ENST00000402325.1,ENST00000579947.1,ENST00000300227.8,ENST00000403303.1	chr18	30847165:30847261:30873122:30873276:30903454:30903597,	30873123	30873276	30873148	30873148	Frame_Shift_Del	T	-	p.N384fs
LIHC	TCGA-G3-A3CJ-01	ASXL3	ENST00000269197.5,ENST00000592288.1	chr18	31250636:31250754:31251710:31251830:31263368:31263532,	31251711	31251830	31251768	31251768	Frame_Shift_Del	A	-	p.Q218fs
LIHC	TCGA-G3-A3CJ-01	ASXL3	ENST00000269197.5,ENST00000592288.1	chr18	31250636:31250754:31251710:31251830:31263368:31263532,	31251711	31251830	31251814	31251814	Frame_Shift_Del	A	-	p.L233fs
LIHC	TCGA-G3-A3CJ-01	GALNT1	ENST00000537549.1,ENST00000590654.1,ENST00000269195.5	chr18	33272144:33272284:33282860:33282959:33283472:33283607,	33282861	33282959	33282916	33282916	Frame_Shift_Del	A	-	p.E452fs
LIHC	TCGA-G3-A3CJ-01	SLC39A6	ENST00000590986.1	chr18	33704482:33704663:33706181:33706979:33709063:33709344,	33706182	33706979	33706229	33706229	Frame_Shift_Del	G	-	p.R248fs
LIHC	TCGA-G3-A3CJ-01	ELP2	ENST00000423854.2,ENST00000539560.1,ENST00000350494.6,ENST00000542430.1,ENST00000542824.1,ENST00000535488.1,ENST00000351393.6,ENST00000358232.6,ENST00000540799.1,ENST00000541190.1,ENST00000540135.1,ENST00000442325.2	chr18	33709887:33710034:33713200:33713279:33716269:33716340,	33713201	33713279	33713267	33713267	Frame_Shift_Del	A	-	p.K69fs
LIHC	TCGA-G3-A3CJ-01	ELP2	ENST00000544267.1,ENST00000539560.1,ENST00000542430.1,ENST00000540323.1,ENST00000358232.6,ENST00000543439.1,ENST00000543127.1	chr18	33718257:33718389:33718757:33718835:33719381:33719576,33718257:33718389:33718757:33718835:33721099:33721154,	33718758	33718835	33718786	33718786	Frame_Shift_Del	A	-	p.G158fs
LIHC	TCGA-G3-A3CJ-01	MOCOS	ENST00000261326.5	chr18	33778652:33778719:33779645:33780287:33783075:33783152,	33779646	33780287	33779754	33779754	Frame_Shift_Del	G	-	p.Q136fs
LIHC	TCGA-G3-A3CJ-01	MOCOS	ENST00000261326.5	chr18	33778652:33778719:33779645:33780287:33783075:33783152,	33779646	33780287	33779979	33779979	Frame_Shift_Del	C	-	p.Y211fs
LIHC	TCGA-G3-A3CJ-01	FHOD3	ENST00000257209.4,ENST00000589114.1,ENST00000359247.4	chr18	34205473:34205712:34238037:34238151:34261398:34261533,	34238038	34238151	34238126	34238126	Frame_Shift_Del	C	-	p.P430fs
LIHC	TCGA-G3-A3CJ-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298433	34298433	Frame_Shift_Del	C	-	p.P884fs
LIHC	TCGA-G3-A3CJ-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298478	34298478	Frame_Shift_Del	C	-	p.P898fs
LIHC	TCGA-G3-A3CJ-01	TPGS2	ENST00000383056.3,ENST00000590500.1	chr18	34378429:34378572:34380160:34380274:34385336:34385360,34378429:34378572:34380160:34380274:34387809:34387897,	34380161	34380274	34380168	34380168	Frame_Shift_Del	C	-	p.G163fs
LIHC	TCGA-G3-A3CJ-01	KIAA1328	ENST00000280020.5,ENST00000435985.2,ENST00000592521.1,ENST00000591619.1	chr18	34415196:34415339:34424170:34424265:34465519:34465635,	34424171	34424265	34424220	34424220	Frame_Shift_Del	T	-	p.L92fs
LIHC	TCGA-G3-A3CJ-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40853659	40853659	Frame_Shift_Del	A	-	p.F245fs
LIHC	TCGA-G3-A3CJ-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854158	40854158	Frame_Shift_Del	T	-	p.N79fs
LIHC	TCGA-G3-A3CJ-01	SLC14A2	ENST00000586448.1,ENST00000255226.6	chr18	43223950:43224125:43243749:43243872:43246101:43246184,	43243750	43243872	43243796	43243796	Frame_Shift_Del	G	-	p.E466fs
LIHC	TCGA-G3-A3CJ-01	SLC14A1	ENST00000590246.1	chr18	43304914:43304978:43310979:43311169:43314238:43314297,43307338:43307383:43310979:43311169:43314238:43314297,	43310980	43311169	43311103	43311103	Frame_Shift_Del	G	-	p.W92fs
LIHC	TCGA-G3-A3CJ-01	SLC14A1	ENST00000590246.1	chr18	43304914:43304978:43310979:43311169:43314238:43314297,43307338:43307383:43310979:43311169:43314238:43314297,	43310980	43311169	43311148	43311148	Frame_Shift_Del	C	-	p.A107fs
LIHC	TCGA-G3-A3CJ-01	EPG5	ENST00000587974.1,ENST00000282041.5	chr18	43497643:43497784:43502306:43502566:43503233:43503353,	43502307	43502566	43502429	43502429	Frame_Shift_Del	G	-	p.P992fs
LIHC	TCGA-G3-A3CJ-01	PSTPIP2	ENST00000588801.1,ENST00000587042.1,ENST00000589328.1,ENST00000409746.5	chr18	43595868:43595903:43604574:43604652:43619912:43620013,	43604575	43604652	43604599	43604599	Frame_Shift_Del	T	-	p.K63fs
LIHC	TCGA-G3-A3CJ-01	HAUS1	ENST00000591715.1	chr18	43685213:43685334:43698146:43698282:43699891:43699927,43695033:43695194:43698146:43698282:43699891:43699927,43685159:43685374:43698146:43698282:43699891:43699927,	43698147	43698282	43698184	43698184	Frame_Shift_Del	T	-	p.N81fs
LIHC	TCGA-G3-A3CJ-01	LOXHD1	ENST00000579038.1,ENST00000300591.6,ENST00000398722.4,ENST00000441551.2	chr18	44098091:44098219:44101059:44101245:44102063:44102272,	44101060	44101245	44101176	44101176	Frame_Shift_Del	G	-	p.Q1513fs
LIHC	TCGA-G3-A3CJ-01	PIAS2	ENST00000590127.1,ENST00000545673.1,ENST00000592011.1,ENST00000585916.1,ENST00000398654.3,ENST00000324794.7,ENST00000592212.1	chr18	44424696:44424802:44426669:44426804:44435307:44435398,	44426670	44426804	44426761	44426761	Frame_Shift_Del	G	-	p.P257fs
LIHC	TCGA-G3-A3CJ-01	PIAS2	ENST00000545673.1	chr18	44435527:44435578:44444126:44444211:44470542:44471017,44435527:44435578:44444126:44444211:44497284:44497308,	44444127	44444211	44444168	44444168	Frame_Shift_Del	A	-	p.F181fs
LIHC	TCGA-G3-A3CJ-01	ACAA2	ENST00000589432.1,ENST00000587994.1,ENST00000285093.10	chr18	47309874:47310301:47311566:47311721:47313660:47313731,	47311567	47311721	47311612	47311612	Frame_Shift_Del	C	-	p.G356fs
LIHC	TCGA-G3-A3CJ-01	MYO5B	ENST00000285039.7	chr18	47431041:47431198:47432788:47433000:47438431:47438543,	47432789	47433000	47432883	47432883	Frame_Shift_Del	T	-	p.T774fs
LIHC	TCGA-G3-A3CJ-01	MYO5B	ENST00000285039.7	chr18	47516808:47516890:47518657:47518801:47527624:47527781,	47518658	47518801	47518773	47518773	Frame_Shift_Del	T	-	p.N214fs
LIHC	TCGA-G3-A3CJ-01	MAPK4	ENST00000400384.2	chr18	48190668:48190874:48241448:48241593:48255527:48256471,48190668:48190874:48241448:48241593:48248307:48248469,	48241449	48241593	48241507	48241507	Frame_Shift_Del	C	-	p.S202fs
LIHC	TCGA-G3-A3CJ-01	POLI	ENST00000217800.5,ENST00000585023.1,ENST00000579434.1,ENST00000406285.3,ENST00000577361.1,ENST00000581950.1,ENST00000579534.1,ENST00000582366.1	chr18	51813650:51813781:51818202:51818408:51820018:51820129,	51818203	51818408	51818248	51818248	Frame_Shift_Del	T	-	p.L415fs
LIHC	TCGA-G3-A3CJ-01	TXNL1	ENST00000217515.6,ENST00000540155.1,ENST00000590954.1,ENST00000587807.1	chr18	54270128:54270287:54278223:54278328:54281654:54281722,	54278224	54278328	54278283	54278283	Frame_Shift_Del	A	-	p.S261fs
LIHC	TCGA-G3-A3CJ-01	NARS	ENST00000591599.1,ENST00000586807.1,ENST00000587194.1,ENST00000540592.1,ENST00000423481.2,ENST00000587366.1	chr18	55283048:55283207:55287800:55287883:55288939:55288969,	55287801	55287883	55287812	55287812	Frame_Shift_Del	T	-	p.T28fs
LIHC	TCGA-G3-A3CJ-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55319265:55319404:55319715:55319961:55321223:55321307,	55319716	55319961	55319912	55319912	Frame_Shift_Del	C	-	p.G1022fs
LIHC	TCGA-G3-A3CJ-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55359038:55359229:55361813:55361902:55362402:55362561,	55361814	55361902	55361867	55361867	Frame_Shift_Del	T	-	p.T326fs
LIHC	TCGA-G3-A3CJ-01	ATP8B1	ENST00000283684.4,ENST00000536015.1	chr18	55361813:55361902:55362402:55362561:55362681:55362764,	55362403	55362561	55362407	55362407	Frame_Shift_Del	A	-	p.F312fs
LIHC	TCGA-G3-A3CJ-01	ATP8B1	ENST00000589147.1,ENST00000591728.1,ENST00000283684.4,ENST00000536015.1	chr18	55368320:55368332:55368446:55368545:55371786:55371900,	55368447	55368545	55368533	55368533	Frame_Shift_Del	T	-	p.I136fs
LIHC	TCGA-G3-A3CJ-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202328	56202328	Frame_Shift_Del	T	-	p.K1697fs
LIHC	TCGA-G3-A3CJ-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203227	56203227	Frame_Shift_Del	T	-	p.I1398fs
LIHC	TCGA-G3-A3CJ-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203898	56203898	Frame_Shift_Del	T	-	p.H1174fs
LIHC	TCGA-G3-A3CJ-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203974	56203974	Frame_Shift_Del	A	-	p.S1149fs
LIHC	TCGA-G3-A3CJ-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204257	56204257	Frame_Shift_Del	T	-	p.Q1054fs
LIHC	TCGA-G3-A3CJ-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204478	56204478	Frame_Shift_Del	T	-	p.I981fs
LIHC	TCGA-G3-A3CJ-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246419	56246419	Frame_Shift_Del	C	-	p.G530fs
LIHC	TCGA-G3-A3CJ-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246652	56246652	Frame_Shift_Del	G	-	p.P452fs
LIHC	TCGA-G3-A3CJ-01	MALT1	ENST00000591792.1,ENST00000348428.3,ENST00000345724.3	chr18	56348401:56348568:56363597:56363719:56367672:56367818,	56363598	56363719	56363648	56363648	Frame_Shift_Del	T	-	p.F143fs
LIHC	TCGA-G3-A3CJ-01	MALT1	ENST00000348428.3,ENST00000345724.3	chr18	56367672:56367823:56376609:56376788:56377207:56377304,	56376610	56376788	56376657	56376657	Frame_Shift_Del	C	-	p.P233fs
LIHC	TCGA-G3-A3CJ-01	SEC11C	ENST00000587834.1	chr18	56819767:56819917:56822919:56823039:56824839:56824897,	56822920	56823039	56823009	56823009	Frame_Shift_Del	A	-	p.E146fs
LIHC	TCGA-G3-A3CJ-01	CCBE1	ENST00000589116.1,ENST00000439986.4	chr18	57106908:57107048:57115214:57115335:57122082:57122183,	57115215	57115335	57115229	57115229	Frame_Shift_Del	C	-	p.G254fs
LIHC	TCGA-G3-A3CJ-01	CCBE1	ENST00000589116.1,ENST00000439986.4	chr18	57106908:57107048:57115214:57115335:57122082:57122183,	57115215	57115335	57115321	57115321	Frame_Shift_Del	G	-	p.P223fs
LIHC	TCGA-G3-A3CJ-01	PIGN	ENST00000400334.3,ENST00000357637.5	chr18	59749905:59749979:59751763:59751839:59752441:59752497,	59751764	59751839	59751791	59751791	Frame_Shift_Del	A	-	p.F825fs
LIHC	TCGA-G3-A3CJ-01	TNFRSF11A	ENST00000586569.1	chr18	60028912:60029026:60033940:60033993:60035933:60036717,	60033941	60033993	60033991	60033991	Frame_Shift_Del	A	-	p.K261fs
LIHC	TCGA-G3-A3CJ-01	VPS4B	ENST00000589604.1,ENST00000588059.1	chr18	61070939:61071059:61077522:61077679:61078699:61078811,	61077523	61077679	61077601	61077601	Frame_Shift_Del	T	-	p.K73fs
LIHC	TCGA-G3-A3CJ-01	SERPINB5	ENST00000489441.1,ENST00000382771.4,ENST00000424602.1	chr18	61151654:61151829:61154178:61154316:61156579:61156660,	61154179	61154316	61154187	61154187	Frame_Shift_Del	T	-	p.H59fs
LIHC	TCGA-G3-A3CJ-01	SERPINB3	ENST00000332821.8,ENST00000283752.5	chr18	61324503:61324646:61325746:61325864:61326632:61326761,	61325747	61325864	61325753	61325753	Frame_Shift_Del	T	-	p.T155fs
LIHC	TCGA-G3-A3CJ-01	SERPINB7	ENST00000425392.1,ENST00000336429.2,ENST00000431370.1,ENST00000398019.2,ENST00000447428.1,ENST00000546027.1	chr18	61449588:61449774:61460394:61460511:61463499:61463546,61459626:61459677:61460394:61460511:61463499:61463546,	61460395	61460511	61460489	61460489	Frame_Shift_Del	A	-	p.E105fs
LIHC	TCGA-G3-A3CJ-01	CDH19	ENST00000262150.2	chr18	64176231:64176483:64178804:64178922:64197081:64197203,	64178805	64178922	64178865	64178865	Frame_Shift_Del	A	-	p.Y506fs
LIHC	TCGA-G3-A3CJ-01	CCDC102B	ENST00000360242.5,ENST00000319445.6	chr18	66564455:66564665:66678170:66678341:66721266:66722426,	66678171	66678341	66678328	66678328	Frame_Shift_Del	A	-	p.Q474fs
LIHC	TCGA-G3-A3CJ-01	CD226	ENST00000579496.1,ENST00000582621.1,ENST00000280200.4,ENST00000583955.1	chr18	67563267:67563281:67613969:67614305:67614596:67614655,	67613970	67614305	67614009	67614009	Frame_Shift_Del	G	-	p.Q115fs
LIHC	TCGA-G3-A3CJ-01	RTTN	ENST00000437017.1,ENST00000255674.6	chr18	67806834:67806952:67807335:67807424:67809523:67809623,	67807336	67807424	67807377	67807377	Frame_Shift_Del	T	-	p.I878fs
LIHC	TCGA-G3-A3CJ-01	ATP9B	ENST00000426216.2,ENST00000585674.1,ENST00000307671.7,ENST00000490210.2	chr18	76966976:76967012:76973961:76974038:77013380:77013541,	76973962	76974038	76974029	76974029	Frame_Shift_Del	A	-	p.P366fs
LIHC	TCGA-G3-A3CJ-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000543761.1,ENST00000490210.2,ENST00000588921.1	chr18	77107906:77107925:77108131:77108196:77119353:77119462,	77108132	77108196	77108194	77108194	Frame_Shift_Del	G	-	p.V967fs
LIHC	TCGA-G3-A3CJ-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470348	77470348	Frame_Shift_Del	T	-	p.F259fs
LIHC	TCGA-G3-A3CJ-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470370	77470370	Frame_Shift_Del	T	-	p.L266fs
LIHC	TCGA-G3-A3CJ-01	PQLC1	ENST00000351365.3,ENST00000494607.1,ENST00000397778.2,ENST00000409073.1	chr18	77690227:77690311:77693968:77694022:77703328:77703462,77679343:77679400:77693968:77694022:77703328:77703462,	77693969	77694022	77693985	77693985	Frame_Shift_Del	G	-	p.P125fs
LIHC	TCGA-G3-A3CJ-01	MIER2	ENST00000264819.4,ENST00000586994.3	chr19	327132:327256:327863:327989:334399:334542,	327864	327989	327892	327892	Frame_Shift_Del	G	-	p.P114fs
LIHC	TCGA-G3-A3CJ-01	THEG	ENST00000342640.4,ENST00000528213.1	chr19	372630:372700:373469:373531:373939:374011,	373470	373531	373492	373492	Frame_Shift_Del	G	-	p.T182fs
LIHC	TCGA-G3-A3CJ-01	MADCAM1	ENST00000215637.3	chr19	498626:498825:501668:501929:504744:504965,	501669	501929	501746	501746	Frame_Shift_Del	C	-	p.P30fs
LIHC	TCGA-G3-A3CJ-01	CDC34	ENST00000215574.4	chr19	536242:536340:537012:537147:541338:541426,	537013	537147	537115	537115	Frame_Shift_Del	G	-	p.K155fs
LIHC	TCGA-G3-A3CJ-01	POLRMT	ENST00000588649.2	chr19	619209:619296:619585:619765:619957:620080,	619586	619765	619588	619588	Frame_Shift_Del	G	-	p.Q1022fs
LIHC	TCGA-G3-A3CJ-01	WDR18	ENST00000587001.2,ENST00000607440.1,ENST00000591985.2,ENST00000251289.5	chr19	989761:989895:990222:990364:990851:990995,	990223	990364	990319	990319	Frame_Shift_Del	C	-	p.G184fs
LIHC	TCGA-G3-A3CJ-01	CNN2	ENST00000606983.1,ENST00000348419.3	chr19	1032557:1032695:1036414:1036561:1037623:1037732,	1036415	1036561	1036502	1036502	Frame_Shift_Del	C	-	p.P200fs
LIHC	TCGA-G3-A3CJ-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3	chr19	1112816:1112948:1113533:1113703:1114229:1114421,	1113534	1113703	1113698	1113698	Frame_Shift_Del	G	-	p.L695fs
LIHC	TCGA-G3-A3CJ-01	DAZAP1	ENST00000336761.6,ENST00000589484.1,ENST00000233078.4,ENST00000587833.1	chr19	1418202:1418369:1418664:1418730:1421149:1421257,1418202:1418369:1418664:1418730:1421146:1421231,	1418665	1418730	1418670	1418670	Frame_Shift_Del	C	-	p.D81fs
LIHC	TCGA-G3-A3CJ-01	DAZAP1	ENST00000589484.1,ENST00000586579.1	chr19	1421149:1421257:1422346:1422395:1428840:1428902,	1422347	1422395	1422375	1422375	Frame_Shift_Del	C	-	p.A148fs
LIHC	TCGA-G3-A3CJ-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430235	1430235	Frame_Shift_Del	C	-	p.P250fs
LIHC	TCGA-G3-A3CJ-01	C19orf25	ENST00000427685.2	chr19	1475144:1475257:1478652:1478904:1479161:1479193,	1478653	1478904	1478765	1478765	Frame_Shift_Del	C	-	p.G46fs
LIHC	TCGA-G3-A3CJ-01	REXO1	ENST00000170168.4	chr19	1823570:1823784:1825837:1825942:1826876:1828630,	1825838	1825942	1825855	1825855	Frame_Shift_Del	A	-	p.S667fs
LIHC	TCGA-G3-A3CJ-01	SCAMP4	ENST00000414057.2,ENST00000316097.8	chr19	1918125:1918282:1918887:1918989:1923068:1923186,	1918888	1918989	1918916	1918916	Frame_Shift_Del	T	-	p.F110fs
LIHC	TCGA-G3-A3CJ-01	DOT1L	ENST00000452696.1	chr19	2189730:2189794:2191082:2191239:2193687:2193782,	2191083	2191239	2191141	2191141	Frame_Shift_Del	C	-	p.S132fs
LIHC	TCGA-G3-A3CJ-01	DOT1L	ENST00000398665.3	chr19	2189730:2189794:2191010:2191239:2193687:2193782,	2191011	2191239	2191141	2191141	Frame_Shift_Del	C	-	p.S132fs
LIHC	TCGA-G3-A3CJ-01	JSRP1	ENST00000586471.2,ENST00000593238.2,ENST00000300961.6	chr19	2253667:2253792:2254185:2254300:2254443:2254481,	2254186	2254300	2254221	2254221	Frame_Shift_Del	G	-	p.P76fs
LIHC	TCGA-G3-A3CJ-01	THOP1	ENST00000589087.1,ENST00000590970.1,ENST00000591363.1,ENST00000307741.6,ENST00000587401.1,ENST00000586677.1	chr19	2808355:2808442:2810301:2810488:2810637:2810660,	2810302	2810488	2810339	2810339	Frame_Shift_Del	G	-	p.R498fs
LIHC	TCGA-G3-A3CJ-01	ZNF77	ENST00000314531.4	chr19	2933215:2934813:2936521:2936702:2939278:2939405,	2936522	2936702	2936584	2936584	Frame_Shift_Del	A	-	p.F83fs
LIHC	TCGA-G3-A3CJ-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000591529.1,ENST00000426948.2,ENST00000443826.3	chr19	3002350:3002501:3005434:3005582:3005718:3005966,	3005435	3005582	3005494	3005494	Frame_Shift_Del	C	-	p.V613fs
LIHC	TCGA-G3-A3CJ-01	GNA15	ENST00000586082.1,ENST00000262958.3	chr19	3150128:3150283:3151704:3151833:3155820:3155824,	3151705	3151833	3151820	3151820	Frame_Shift_Del	A	-	p.K201fs
LIHC	TCGA-G3-A3CJ-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532525	3532525	Frame_Shift_Del	G	-	p.S373fs
LIHC	TCGA-G3-A3CJ-01	PIP5K1C	ENST00000335312.3	chr19	3632873:3633167:3633434:3633518:3638881:3639014,	3633435	3633518	3633497	3633497	Frame_Shift_Del	C	-	p.V648fs
LIHC	TCGA-G3-A3CJ-01	TJP3	ENST00000589378.1,ENST00000539908.2,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9,ENST00000586032.1	chr19	3746814:3746874:3747791:3748079:3750135:3750182,	3747792	3748079	3747947	3747947	Frame_Shift_Del	G	-	p.E826fs
LIHC	TCGA-G3-A3CJ-01	CREB3L3	ENST00000602147.1,ENST00000602257.1,ENST00000078445.2	chr19	4154895:4155024:4156991:4157292:4159660:4159779,	4156992	4157292	4157242	4157242	Frame_Shift_Del	C	-	p.T136fs
LIHC	TCGA-G3-A3CJ-01	CREB3L3	ENST00000595923.1	chr19	4154895:4155024:4156994:4157292:4159660:4159779,	4156995	4157292	4157242	4157242	Frame_Shift_Del	C	-	p.T136fs
LIHC	TCGA-G3-A3CJ-01	SIRT6	ENST00000600540.1	chr19	4174874:4174943:4175024:4175757:4175838:4175934,	4175025	4175757	4175744	4175744	Frame_Shift_Del	C	-	p.D183fs
LIHC	TCGA-G3-A3CJ-01	SIRT6	ENST00000601571.1,ENST00000597896.1,ENST00000381935.3,ENST00000600938.1,ENST00000337491.2	chr19	4175024:4175148:4175676:4175757:4175838:4175934,	4175677	4175757	4175744	4175744	Frame_Shift_Del	C	-	p.D183fs
LIHC	TCGA-G3-A3CJ-01	MPND	ENST00000262966.8,ENST00000359935.4,ENST00000599840.1,ENST00000594716.1,ENST00000596722.1,ENST00000597036.1	chr19	4345741:4345978:4352893:4353026:4354041:4354126,	4352894	4353026	4352995	4352995	Frame_Shift_Del	G	-	p.L211fs
LIHC	TCGA-G3-A3CJ-01	DPP9	ENST00000597145.1,ENST00000598800.1,ENST00000262960.9,ENST00000597849.1,ENST00000594671.1	chr19	4694672:4694835:4695389:4695567:4697562:4697663,	4695390	4695567	4695468	4695468	Frame_Shift_Del	C	-	p.R425fs
LIHC	TCGA-G3-A3CJ-01	KDM4B	ENST00000159111.4,ENST00000536461.1,ENST00000381759.4	chr19	5016335:5016350:5032876:5033042:5039846:5040022,	5032877	5033042	5032931	5032931	Frame_Shift_Del	C	-	p.N10fs
LIHC	TCGA-G3-A3CJ-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000587303.1,ENST00000372412.4	chr19	5215508:5215606:5216730:5216778:5218430:5218543,	5216731	5216778	5216744	5216744	Frame_Shift_Del	C	-	p.G1362fs
LIHC	TCGA-G3-A3CJ-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000587303.1,ENST00000372412.4	chr19	5215508:5215606:5216730:5216778:5218430:5218543,	5216731	5216778	5216758	5216758	Frame_Shift_Del	G	-	p.L1358fs
LIHC	TCGA-G3-A3CJ-01	SAFB2	ENST00000591120.1	chr19	5613475:5613538:5616138:5616346:5621319:5621407,	5616139	5616346	5616208	5616208	Frame_Shift_Del	A	-	p.C160fs
LIHC	TCGA-G3-A3CJ-01	SAFB2	ENST00000591120.1	chr19	5613475:5613538:5616138:5616346:5621319:5621407,	5616139	5616346	5616221	5616221	Frame_Shift_Del	A	-	p.L156fs
LIHC	TCGA-G3-A3CJ-01	HSD11B1L	ENST00000582346.1	chr19	5684999:5685130:5686426:5686538:5686910:5687002,5684829:5684916:5686426:5686538:5686910:5687002,	5686427	5686538	5686455	5686455	Frame_Shift_Del	C	-	p.A78fs
LIHC	TCGA-G3-A3CJ-01	RANBP3	ENST00000340578.6,ENST00000592771.1,ENST00000592197.1,ENST00000034275.8,ENST00000591092.1,ENST00000541471.1,ENST00000439268.2,ENST00000587411.1,ENST00000586344.1	chr19	5921211:5921332:5923204:5923314:5923822:5923885,	5923205	5923314	5923231	5923231	Frame_Shift_Del	C	-	p.E396fs
LIHC	TCGA-G3-A3CJ-01	RANBP3	ENST00000340578.6,ENST00000592771.1,ENST00000590953.1,ENST00000588879.1,ENST00000590623.1,ENST00000034275.8,ENST00000591092.1,ENST00000589353.1,ENST00000587159.1,ENST00000541471.1,ENST00000439268.2,ENST00000586344.1,ENST00000591736.1,ENST00000588010.1,ENST00000586117.1,ENST00000587463.1	chr19	5928072:5928098:5932462:5932555:5933424:5933490,5931523:5931542:5932462:5932555:5933424:5933490,	5932463	5932555	5932478	5932478	Frame_Shift_Del	C	-	p.A184fs
LIHC	TCGA-G3-A3CJ-01	RFX2	ENST00000359161.3,ENST00000592546.1,ENST00000589742.1,ENST00000303657.5	chr19	6007785:6007813:6008116:6008235:6010146:6010262,	6008117	6008235	6008201	6008201	Frame_Shift_Del	G	-	p.P350fs
LIHC	TCGA-G3-A3CJ-01	ACSBG2	ENST00000252669.5,ENST00000591403.1,ENST00000591741.1,ENST00000588485.1,ENST00000586696.1,ENST00000588304.1	chr19	6187689:6187856:6190594:6190703:6192678:6193100,	6190595	6190703	6190646	6190646	Frame_Shift_Del	A	-	p.Q610fs
LIHC	TCGA-G3-A3CJ-01	DENND1C	ENST00000543576.1,ENST00000590818.1,ENST00000590444.1,ENST00000590867.1,ENST00000381480.2	chr19	6472899:6473004:6475284:6475410:6475494:6475596,	6475285	6475410	6475366	6475366	Frame_Shift_Del	G	-	p.P324fs
LIHC	TCGA-G3-A3CJ-01	C3	ENST00000245907.6	chr19	6709766:6709853:6710649:6710856:6710997:6711207,	6710650	6710856	6710756	6710756	Frame_Shift_Del	G	-	p.P527fs
LIHC	TCGA-G3-A3CJ-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755095	6755095	Frame_Shift_Del	C	-	p.G243fs
LIHC	TCGA-G3-A3CJ-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6755252	6755252	Frame_Shift_Del	G	-	p.L191fs
LIHC	TCGA-G3-A3CJ-01	INSR	ENST00000598216.1,ENST00000302850.5,ENST00000341500.5	chr19	7166164:7166415:7167978:7168105:7170547:7170762,	7167979	7168105	7168023	7168023	Frame_Shift_Del	G	-	p.P522fs
LIHC	TCGA-G3-A3CJ-01	MCOLN1	ENST00000264079.6,ENST00000394321.5	chr19	7592749:7592846:7593043:7593143:7593482:7593589,	7593044	7593143	7593124	7593124	Frame_Shift_Del	C	-	p.H286fs
LIHC	TCGA-G3-A3CJ-01	STXBP2	ENST00000414284.2,ENST00000600702.1,ENST00000599737.1,ENST00000221283.5,ENST00000441779.2	chr19	7707868:7707934:7708050:7708131:7709499:7709638,	7708051	7708131	7708098	7708098	Frame_Shift_Del	G	-	p.K369fs
LIHC	TCGA-G3-A3CJ-01	FCER2	ENST00000346664.5,ENST00000597921.1,ENST00000593418.1,ENST00000597934.1	chr19	7763241:7763295:7763626:7763740:7764624:7764727,	7763627	7763740	7763700	7763700	Frame_Shift_Del	C	-	p.G21fs
LIHC	TCGA-G3-A3CJ-01	CLEC4M	ENST00000248228.4,ENST00000598879.1,ENST00000597522.1,ENST00000357361.2	chr19	7828152:7828198:7828278:7828362:7830523:7830679,7828152:7828198:7828278:7828362:7830070:7830135,	7828279	7828362	7828309	7828309	Frame_Shift_Del	T	-	p.L26fs
LIHC	TCGA-G3-A3CJ-01	CLEC4M	ENST00000248228.4,ENST00000598879.1,ENST00000597522.1,ENST00000357361.2	chr19	7828152:7828198:7828278:7828362:7830523:7830679,7828152:7828198:7828278:7828362:7830070:7830135,	7828279	7828362	7828316	7828316	Frame_Shift_Del	A	-	p.P28fs
LIHC	TCGA-G3-A3CJ-01	TIMM44	ENST00000600748.1,ENST00000270538.3,ENST00000595831.1	chr19	7999949:8000030:8002911:8003082:8005986:8006082,	8002912	8003082	8002975	8002975	Frame_Shift_Del	T	-	p.K83fs
LIHC	TCGA-G3-A3CJ-01	ELAVL1	ENST00000596459.1,ENST00000351593.5,ENST00000407627.2	chr19	8028513:8028691:8032448:8032674:8038608:8038669,	8032449	8032674	8032530	8032530	Frame_Shift_Del	T	-	p.N192fs
LIHC	TCGA-G3-A3CJ-01	ELAVL1	ENST00000596459.1,ENST00000351593.5,ENST00000407627.2	chr19	8028513:8028691:8032448:8032674:8038608:8038669,	8032449	8032674	8032587	8032587	Frame_Shift_Del	G	-	p.P173fs
LIHC	TCGA-G3-A3CJ-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8148130:8148256:8150246:8150453:8151083:8151209,	8150247	8150453	8150277	8150277	Frame_Shift_Del	G	-	p.H2353fs
LIHC	TCGA-G3-A3CJ-01	ANGPTL4	ENST00000301455.2,ENST00000595079.1,ENST00000597137.1,ENST00000593998.1,ENST00000541807.1,ENST00000594348.1	chr19	8431086:8431203:8434102:8434216:8435939:8436035,	8434103	8434216	8434176	8434176	Frame_Shift_Del	G	-	p.Q207fs
LIHC	TCGA-G3-A3CJ-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8961951:8962031:8962353:8962395:8966649:8966816,	8962354	8962395	8962380	8962380	Frame_Shift_Del	C	-	p.R14440fs
LIHC	TCGA-G3-A3CJ-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8969358:8969427:8971675:8971824:8973548:8973616,	8971676	8971824	8971704	8971704	Frame_Shift_Del	G	-	p.T14296fs
LIHC	TCGA-G3-A3CJ-01	MUC16	ENST00000397910.4	chr19	9027539:9027575:9028223:9028396:9033230:9033298,	9028224	9028396	9028258	9028258	Frame_Shift_Del	G	-	p.P12178fs
LIHC	TCGA-G3-A3CJ-01	ZNF846	ENST00000588267.1	chr19	9863065:9863116:9868734:9869440:9872757:9872841,	9868735	9869440	9869275	9869275	Frame_Shift_Del	A	-	p.Y160fs
LIHC	TCGA-G3-A3CJ-01	RDH8	ENST00000171214.1,ENST00000591589.1	chr19	10127841:10127891:10129406:10129586:10131384:10131478,	10129407	10129586	10129487	10129487	Frame_Shift_Del	T	-	p.F136fs
LIHC	TCGA-G3-A3CJ-01	EIF3G	ENST00000253108.4,ENST00000590158.1,ENST00000593054.1	chr19	10225737:10225805:10226154:10226261:10226359:10226457,	10226155	10226261	10226204	10226204	Frame_Shift_Del	C	-	p.V300fs
LIHC	TCGA-G3-A3CJ-01	EIF3G	ENST00000253108.4,ENST00000588709.1,ENST00000587590.1,ENST00000589009.1,ENST00000589454.1,ENST00000593066.1,ENST00000587993.1	chr19	10227647:10227665:10227759:10227864:10229343:10229403,	10227760	10227864	10227826	10227826	Frame_Shift_Del	G	-	p.P113fs
LIHC	TCGA-G3-A3CJ-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4,ENST00000586588.1	chr19	10250351:10250493:10250721:10251004:10251456:10251585,	10250722	10251004	10250882	10250882	Frame_Shift_Del	C	-	p.A1200fs
LIHC	TCGA-G3-A3CJ-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4,ENST00000586588.1	chr19	10250351:10250493:10250721:10251004:10251456:10251585,	10250722	10251004	10250934	10250934	Frame_Shift_Del	G	-	p.P1182fs
LIHC	TCGA-G3-A3CJ-01	TYK2	ENST00000525621.1,ENST00000592137.1,ENST00000264818.6,ENST00000524462.1	chr19	10463643:10463774:10464203:10464322:10464717:10464779,	10464204	10464322	10464257	10464257	Frame_Shift_Del	G	-	p.R992fs
LIHC	TCGA-G3-A3CJ-01	TYK2	ENST00000525621.1,ENST00000264818.6,ENST00000524462.1,ENST00000529370.1	chr19	10472753:10472857:10472939:10473132:10473224:10473333,	10472940	10473132	10473072	10473072	Frame_Shift_Del	C	-	p.A513fs
LIHC	TCGA-G3-A3CJ-01	CDC37	ENST00000593124.1	chr19	10506603:10506879:10514053:10514271:10530136:10530273,	10514054	10514271	10514093	10514093	Frame_Shift_Del	G	-	p.P21fs
LIHC	TCGA-G3-A3CJ-01	ILF3	ENST00000587505.1,ENST00000592763.1,ENST00000250241.8,ENST00000420083.1,ENST00000587840.1,ENST00000590261.1,ENST00000589485.1,ENST00000318511.3,ENST00000449870.1,ENST00000407004.3,ENST00000589998.1,ENST00000587928.1,ENST00000588657.1	chr19	10789860:10789868:10790491:10790603:10791021:10791119,	10790492	10790603	10790587	10790587	Frame_Shift_Del	G	-	p.S281fs
LIHC	TCGA-G3-A3CJ-01	ILF3	ENST00000591649.1,ENST00000590261.1,ENST00000318511.3,ENST00000449870.1,ENST00000587928.1,ENST00000588657.1	chr19	10794592:10794646:10799225:10799354:10799854:10799988,10798275:10798384:10799225:10799354:10799854:10799988,	10799226	10799354	10799303	10799303	Frame_Shift_Del	G	-	p.G839fs
LIHC	TCGA-G3-A3CJ-01	QTRT1	ENST00000250237.5	chr19	10822836:10822975:10823228:10823304:10823433:10823543,	10823229	10823304	10823289	10823289	Frame_Shift_Del	C	-	p.F282fs
LIHC	TCGA-G3-A3CJ-01	DNM2	ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000359692.6	chr19	10828883:10829079:10870413:10870487:10883154:10883183,	10870414	10870487	10870424	10870424	Frame_Shift_Del	C	-	p.P58fs
LIHC	TCGA-G3-A3CJ-01	DNM2	ENST00000587830.2,ENST00000355667.6,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4,ENST00000585892.1,ENST00000359692.6,ENST00000591701.1	chr19	10897239:10897382:10904395:10904531:10906047:10906115,	10904396	10904531	10904509	10904509	Frame_Shift_Del	G	-	p.R369fs
LIHC	TCGA-G3-A3CJ-01	DNM2	ENST00000587830.2,ENST00000389253.4,ENST00000314646.5,ENST00000408974.4	chr19	10906047:10906115:10908055:10908194:10909161:10909238,	10908056	10908194	10908176	10908176	Frame_Shift_Del	A	-	p.I439fs
LIHC	TCGA-G3-A3CJ-01	LDLR	ENST00000558013.1,ENST00000545707.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1,ENST00000455727.2,ENST00000535915.1	chr19	11226769:11226888:11227534:11227674:11230767:11230909,	11227535	11227674	11227603	11227603	Frame_Shift_Del	G	-	p.G593fs
LIHC	TCGA-G3-A3CJ-01	KANK2	ENST00000432929.2,ENST00000589359.1,ENST00000589894.1,ENST00000586659.1,ENST00000355150.5	chr19	11285148:11285368:11286577:11286665:11287253:11287493,	11286578	11286665	11286618	11286618	Frame_Shift_Del	T	-	p.K611fs
LIHC	TCGA-G3-A3CJ-01	TSPAN16	ENST00000316737.1,ENST00000590327.1,ENST00000337994.5	chr19	11408817:11409015:11409547:11409622:11411876:11411984,	11409548	11409622	11409585	11409585	Frame_Shift_Del	T	-	p.V102fs
LIHC	TCGA-G3-A3CJ-01	RGL3	ENST00000393423.3	chr19	11508120:11508273:11510530:11510645:11510715:11510780,	11510531	11510645	11510548	11510548	Frame_Shift_Del	G	-	p.Q577fs
LIHC	TCGA-G3-A3CJ-01	RGL3	ENST00000563726.1,ENST00000380456.3,ENST00000566153.1,ENST00000562663.1	chr19	11508120:11508273:11510530:11510627:11510715:11510780,	11510531	11510627	11510548	11510548	Frame_Shift_Del	G	-	p.Q577fs
LIHC	TCGA-G3-A3CJ-01	ECSIT	ENST00000591104.1,ENST00000585318.1,ENST00000252440.7,ENST00000270517.7,ENST00000592312.1	chr19	11618809:11618863:11623870:11624094:11624618:11624673,	11623871	11624094	11623960	11623960	Frame_Shift_Del	G	-	p.R217fs
LIHC	TCGA-G3-A3CJ-01	ECSIT	ENST00000593231.1	chr19	11618809:11618863:11623870:11624099:11624618:11624673,	11623871	11624099	11623960	11623960	Frame_Shift_Del	G	-	p.R217fs
LIHC	TCGA-G3-A3CJ-01	ECSIT	ENST00000591104.1,ENST00000585318.1,ENST00000252440.7,ENST00000270517.7,ENST00000592312.1	chr19	11618809:11618863:11623870:11624094:11624618:11624673,	11623871	11624094	11624084	11624084	Frame_Shift_Del	G	-	p.P175fs
LIHC	TCGA-G3-A3CJ-01	ECSIT	ENST00000593231.1	chr19	11618809:11618863:11623870:11624099:11624618:11624673,	11623871	11624099	11624084	11624084	Frame_Shift_Del	G	-	p.P175fs
LIHC	TCGA-G3-A3CJ-01	ZNF844	ENST00000439326.3	chr19	12184845:12184972:12185175:12185236:12186126:12186696,	12185176	12185236	12185179	12185179	Frame_Shift_Del	A	-	p.E45fs
LIHC	TCGA-G3-A3CJ-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384334	12384334	Frame_Shift_Del	T	-	p.I294fs
LIHC	TCGA-G3-A3CJ-01	GCDH	ENST00000588905.1,ENST00000457854.1,ENST00000222214.5,ENST00000590627.1,ENST00000591470.1,ENST00000591043.1,ENST00000585420.1,ENST00000587832.1	chr19	13002644:13002788:13002929:13002992:13004296:13004307,	13002930	13002992	13002979	13002979	Frame_Shift_Del	C	-	p.G107fs
LIHC	TCGA-G3-A3CJ-01	GCDH	ENST00000588905.1,ENST00000457854.1,ENST00000222214.5,ENST00000591470.1,ENST00000591043.1,ENST00000585420.1	chr19	13002929:13002992:13004296:13004467:13006805:13006809,	13004297	13004467	13004332	13004332	Frame_Shift_Del	G	-	p.G124fs
LIHC	TCGA-G3-A3CJ-01	FARSA	ENST00000586280.1,ENST00000588965.1,ENST00000593021.1,ENST00000314606.4,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13039386:13039477:13039568:13039661:13041036:13041155,	13039569	13039661	13039622	13039622	Frame_Shift_Del	A	-	p.F221fs
LIHC	TCGA-G3-A3CJ-01	FARSA	ENST00000586280.1	chr19	13041036:13041155:13041242:13041563:13044363:13044494,	13041243	13041563	13041284	13041284	Frame_Shift_Del	C	-	p.V155fs
LIHC	TCGA-G3-A3CJ-01	FARSA	ENST00000588965.1,ENST00000314606.4,ENST00000423140.2,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13041036:13041155:13041242:13041341:13041425:13041563,	13041243	13041341	13041284	13041284	Frame_Shift_Del	C	-	p.V155fs
LIHC	TCGA-G3-A3CJ-01	NFIX	ENST00000592199.1	chr19	13106651:13106678:13135834:13136366:13183860:13183923,	13135835	13136366	13136000	13136000	Frame_Shift_Del	C	-	p.P64fs
LIHC	TCGA-G3-A3CJ-01	TRMT1	ENST00000588746.1	chr19	13226092:13226216:13226439:13226582:13226810:13226841,13226277:13226280:13226439:13226582:13226810:13226841,13226277:13226280:13226439:13226582:13226919:13227245,	13226440	13226582	13226551	13226551	Frame_Shift_Del	T	-	p.K114fs
LIHC	TCGA-G3-A3CJ-01	ZSWIM4	ENST00000254323.2,ENST00000590508.1,ENST00000440752.2	chr19	13928535:13928790:13930170:13930306:13934159:13934314,	13930171	13930306	13930228	13930228	Frame_Shift_Del	C	-	p.T544fs
LIHC	TCGA-G3-A3CJ-01	C19orf57	ENST00000346736.2,ENST00000454313.1,ENST00000586783.1	chr19	13996773:13996868:14000000:14001275:14003598:14003703,	14000001	14001275	14000011	14000011	Frame_Shift_Del	G	-	p.P554fs
LIHC	TCGA-G3-A3CJ-01	GIPC1	ENST00000345425.2,ENST00000393033.4,ENST00000586027.1,ENST00000393029.3,ENST00000393028.1,ENST00000587210.1,ENST00000591349.1	chr19	14590223:14590336:14591116:14591297:14591404:14591590,	14591117	14591297	14591135	14591135	Frame_Shift_Del	C	-	p.E213fs
LIHC	TCGA-G3-A3CJ-01	SLC1A6	ENST00000600144.1,ENST00000221742.3,ENST00000430939.2	chr19	15061006:15061202:15063739:15063874:15064946:15065141,	15063740	15063874	15063831	15063831	Frame_Shift_Del	G	-	p.Q406fs
LIHC	TCGA-G3-A3CJ-01	SYDE1	ENST00000600440.1	chr19	15218215:15218332:15220067:15220208:15220514:15221159,	15220068	15220208	15220157	15220157	Frame_Shift_Del	C	-	p.P128fs
LIHC	TCGA-G3-A3CJ-01	ILVBL	ENST00000263383.3,ENST00000533086.1,ENST00000596093.1,ENST00000524779.1,ENST00000534378.1	chr19	15226670:15226732:15226811:15226882:15226962:15227132,	15226812	15226882	15226860	15226860	Frame_Shift_Del	A	-	p.V498fs
LIHC	TCGA-G3-A3CJ-01	NOTCH3	ENST00000263388.2	chr19	15292386:15292612:15295105:15295261:15295716:15295830,	15295106	15295261	15295221	15295221	Frame_Shift_Del	G	-	p.P817fs
LIHC	TCGA-G3-A3CJ-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15302234:15302468:15302555:15302678:15302770:15303109,	15302556	15302678	15302611	15302611	Frame_Shift_Del	C	-	p.G249fs
LIHC	TCGA-G3-A3CJ-01	RASAL3	ENST00000602101.2,ENST00000343625.7,ENST00000599694.1	chr19	15565467:15565704:15566914:15567059:15567312:15567410,	15566915	15567059	15567007	15567007	Frame_Shift_Del	G	-	p.P543fs
LIHC	TCGA-G3-A3CJ-01	PGLYRP2	ENST00000340880.4	chr19	15582700:15582911:15586348:15587419:15590121:15590246,	15586349	15587419	15587185	15587185	Frame_Shift_Del	C	-	p.R99fs
LIHC	TCGA-G3-A3CJ-01	CYP4F12	ENST00000550308.1,ENST00000451750.1,ENST00000430608.2,ENST00000324632.10	chr19	15784338:15784537:15789070:15789215:15791053:15791062,	15789071	15789215	15789164	15789164	Frame_Shift_Del	T	-	p.F98fs
LIHC	TCGA-G3-A3CJ-01	CYP4F11	ENST00000591841.1,ENST00000248041.8,ENST00000402119.4	chr19	16025114:16025197:16025571:16025705:16032846:16032976,16025411:16025476:16025571:16025705:16032846:16032976,	16025572	16025705	16025651	16025651	Frame_Shift_Del	C	-	p.R390fs
LIHC	TCGA-G3-A3CJ-01	CIB3	ENST00000269878.4,ENST00000597251.1	chr19	16275528:16275724:16278947:16279095:16284235:16284286,16275528:16275724:16278947:16279095:16280440:16280533,	16278948	16279095	16279019	16279019	Frame_Shift_Del	A	-	p.L92fs
LIHC	TCGA-G3-A3CJ-01	CIB3	ENST00000541493.1	chr19	16280440:16280533:16283972:16284007:16284235:16284286,16275528:16275724:16283972:16284007:16284235:16284286,	16283973	16284007	16283994	16283994	Frame_Shift_Del	A	-	p.F22fs
LIHC	TCGA-G3-A3CJ-01	EPS15L1	ENST00000602022.1,ENST00000599790.1,ENST00000455140.2,ENST00000248070.6,ENST00000592031.1,ENST00000535753.2	chr19	16504761:16504812:16506154:16506278:16513125:16513296,16504761:16504812:16506154:16506278:16513131:16513296,	16506155	16506278	16506174	16506174	Frame_Shift_Del	T	-	p.K632fs
LIHC	TCGA-G3-A3CJ-01	EPS15L1	ENST00000602022.1,ENST00000594975.1,ENST00000597937.1,ENST00000455140.2,ENST00000248070.6,ENST00000602009.1,ENST00000592031.1,ENST00000535753.2	chr19	16532129:16532287:16535893:16536127:16539512:16539572,	16535894	16536127	16535994	16535994	Frame_Shift_Del	G	-	p.P78fs
LIHC	TCGA-G3-A3CJ-01	NWD1	ENST00000549814.1,ENST00000438489.2,ENST00000523826.1,ENST00000552788.1,ENST00000518676.1,ENST00000339803.6	chr19	16918396:16918947:16923555:16923661:16925838:16927537,	16923556	16923661	16923571	16923571	Frame_Shift_Del	G	-	p.G1435fs
LIHC	TCGA-G3-A3CJ-01	CPAMD8	ENST00000443236.1	chr19	17057891:17058037:17062778:17063010:17068662:17068725,	17062779	17063010	17062832	17062832	Frame_Shift_Del	C	-	p.E866fs
LIHC	TCGA-G3-A3CJ-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000595618.1	chr19	17273797:17273932:17278752:17278874:17283145:17283287,	17278753	17278874	17278781	17278781	Frame_Shift_Del	G	-	p.W567fs
LIHC	TCGA-G3-A3CJ-01	USHBP1	ENST00000252597.3,ENST00000431146.2	chr19	17367279:17367529:17369020:17369194:17370097:17370238,	17369021	17369194	17369093	17369093	Frame_Shift_Del	T	-	p.K383fs
LIHC	TCGA-G3-A3CJ-01	USHBP1	ENST00000597928.1	chr19	17367279:17367529:17369020:17369510:17370097:17370238,	17369021	17369510	17369093	17369093	Frame_Shift_Del	T	-	p.K383fs
LIHC	TCGA-G3-A3CJ-01	ANKLE1	ENST00000594072.1,ENST00000404085.1,ENST00000598347.1	chr19	17394033:17394771:17394897:17395075:17396239:17396399,17394033:17394693:17394897:17395075:17396239:17396399,	17394898	17395075	17395031	17395031	Frame_Shift_Del	G	-	p.E444fs
LIHC	TCGA-G3-A3CJ-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000596925.1	chr19	17420382:17420466:17424831:17424912:17425146:17425198,	17424832	17424912	17424837	17424837	Frame_Shift_Del	T	-	p.D3fs
LIHC	TCGA-G3-A3CJ-01	SLC27A1	ENST00000442725.1,ENST00000598424.1,ENST00000593701.1,ENST00000252595.7	chr19	17599816:17599926:17608063:17608273:17611086:17611213,	17608064	17608273	17608160	17608160	Frame_Shift_Del	G	-	p.G365fs
LIHC	TCGA-G3-A3CJ-01	UNC13A	ENST00000552293.1,ENST00000551649.1,ENST00000428389.2,ENST00000550896.1	chr19	17785465:17785565:17786820:17786850:17798986:17799008,	17786821	17786850	17786843	17786843	Frame_Shift_Del	T	-	p.K98fs
LIHC	TCGA-G3-A3CJ-01	FCHO1	ENST00000600676.1,ENST00000601247.1	chr19	17865125:17865170:17865926:17866000:17873570:17873662,	17865927	17866000	17865994	17865994	Frame_Shift_Del	T	-	p.H7fs
LIHC	TCGA-G3-A3CJ-01	B3GNT3	ENST00000318683.6	chr19	17905965:17906015:17918566:17919183:17922379:17922562,	17918567	17919183	17918745	17918745	Frame_Shift_Del	C	-	p.I43fs
LIHC	TCGA-G3-A3CJ-01	B3GNT3	ENST00000595387.1	chr19	17905965:17906015:17918547:17919183:17922379:17922562,	17918548	17919183	17918745	17918745	Frame_Shift_Del	C	-	p.I43fs
LIHC	TCGA-G3-A3CJ-01	IL12RB1	ENST00000593993.2,ENST00000600835.2	chr19	18172990:18173087:18174685:18174820:18177351:18177507,	18174686	18174820	18174718	18174718	Frame_Shift_Del	C	-	p.G529fs
LIHC	TCGA-G3-A3CJ-01	IL12RB1	ENST00000322153.7	chr19	18181371:18182143:18182921:18183159:18184326:18184409,	18182922	18183159	18183042	18183042	Frame_Shift_Del	G	-	p.L301fs
LIHC	TCGA-G3-A3CJ-01	MAST3	ENST00000609076.1,ENST00000262811.6	chr19	18255951:18256039:18256552:18256675:18257690:18257784,	18256553	18256675	18256622	18256622	Frame_Shift_Del	G	-	p.G1008fs
LIHC	TCGA-G3-A3CJ-01	LSM4	ENST00000252816.6	chr19	18420560:18420671:18423413:18423512:18426833:18426875,18420560:18420671:18423413:18423512:18433827:18433870,	18423414	18423512	18423496	18423496	Frame_Shift_Del	T	-	p.N21fs
LIHC	TCGA-G3-A3CJ-01	GDF15	ENST00000595973.2	chr19	18493159:18493257:18496726:18497276:18499095:18499157,	18496727	18497276	18497078	18497078	Frame_Shift_Del	G	-	p.G28fs
LIHC	TCGA-G3-A3CJ-01	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507640	18507640	Frame_Shift_Del	A	-	p.F45fs
LIHC	TCGA-G3-A3CJ-01	SSBP4	ENST00000348495.6,ENST00000601357.2,ENST00000598159.2,ENST00000601614.2,ENST00000600628.2,ENST00000597724.2,ENST00000602088.3,ENST00000270061.7	chr19	18538160:18538233:18538561:18538623:18538707:18538792,	18538562	18538623	18538595	18538595	Frame_Shift_Del	C	-	p.P57fs
LIHC	TCGA-G3-A3CJ-01	ISYNA1	ENST00000457269.4	chr19	18547190:18547289:18547782:18547915:18548408:18548570,18547656:18547687:18547782:18547915:18548408:18548570,18547656:18547687:18547782:18547915:18548669:18548798,	18547783	18547915	18547843	18547843	Frame_Shift_Del	C	-	p.V119fs
LIHC	TCGA-G3-A3CJ-01	FKBP8	ENST00000606531.2	chr19	18642938:18643065:18643473:18643624:18644079:18644157,	18643474	18643624	18643481	18643481	Frame_Shift_Del	C	-	p.G383fs
LIHC	TCGA-G3-A3CJ-01	FKBP8	ENST00000453489.2,ENST00000222308.4,ENST00000608443.1,ENST00000601844.1,ENST00000544835.3,ENST00000597960.3,ENST00000610101.1,ENST00000596558.2	chr19	18642938:18643065:18643473:18643605:18644079:18644157,	18643474	18643605	18643481	18643481	Frame_Shift_Del	C	-	p.G383fs
LIHC	TCGA-G3-A3CJ-01	HOMER3	ENST00000221222.11,ENST00000596482.1,ENST00000542541.2,ENST00000600077.1,ENST00000433218.2,ENST00000539827.1,ENST00000392351.3,ENST00000355887.6	chr19	19043732:19043854:19045111:19045219:19049161:19049293,	19045112	19045219	19045127	19045127	Frame_Shift_Del	C	-	p.G132fs
LIHC	TCGA-G3-A3CJ-01	TMEM161A	ENST00000590216.2	chr19	19243466:19243563:19243938:19244115:19245592:19245696,	19243939	19244115	19244012	19244012	Frame_Shift_Del	G	-	p.R39fs
LIHC	TCGA-G3-A3CJ-01	TMEM161A	ENST00000450333.2,ENST00000587915.1,ENST00000587096.1,ENST00000587583.2,ENST00000587406.1,ENST00000587985.2,ENST00000162044.9	chr19	19243466:19243563:19243938:19244019:19249234:19249256,19243466:19243563:19243938:19244019:19245592:19245696,	19243939	19244019	19244012	19244012	Frame_Shift_Del	G	-	p.R39fs
LIHC	TCGA-G3-A3CJ-01	TMEM161A	ENST00000592147.1	chr19	19243466:19243563:19243938:19244166:19249234:19249256,	19243939	19244166	19244012	19244012	Frame_Shift_Del	G	-	p.R39fs
LIHC	TCGA-G3-A3CJ-01	MEF2B	ENST00000162023.5,ENST00000409224.1,ENST00000602424.2,ENST00000410050.1,ENST00000424583.2	chr19	19257363:19257457:19257550:19257684:19257844:19257992,	19257551	19257684	19257564	19257564	Frame_Shift_Del	C	-	p.G221fs
LIHC	TCGA-G3-A3CJ-01	RFXANK	ENST00000545522.2,ENST00000303088.4,ENST00000540981.1,ENST00000407360.3,ENST00000456252.3,ENST00000421262.3	chr19	19303778:19303909:19304747:19304942:19307774:19307855,19303778:19303909:19304747:19304942:19307771:19307834,	19304748	19304942	19304892	19304892	Frame_Shift_Del	C	-	p.T46fs
LIHC	TCGA-G3-A3CJ-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338832	19338832	Frame_Shift_Del	C	-	p.S801fs
LIHC	TCGA-G3-A3CJ-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359552	19359552	Frame_Shift_Del	C	-	p.I1227fs
LIHC	TCGA-G3-A3CJ-01	SUGP1	ENST00000585444.1	chr19	19420905:19421009:19427055:19427402:19431271:19431279,	19427056	19427402	19427355	19427355	Frame_Shift_Del	T	-	p.M28fs
LIHC	TCGA-G3-A3CJ-01	SUGP1	ENST00000247001.5,ENST00000334782.5,ENST00000535070.1,ENST00000585763.1,ENST00000588731.2,ENST00000588580.2,ENST00000606725.1	chr19	19420905:19421009:19427230:19427402:19431271:19431279,	19427231	19427402	19427355	19427355	Frame_Shift_Del	T	-	p.M28fs
LIHC	TCGA-G3-A3CJ-01	SUGP1	ENST00000585444.1	chr19	19420905:19421009:19427055:19427402:19431271:19431279,	19427056	19427402	19427369	19427369	Frame_Shift_Del	G	-	p.P23fs
LIHC	TCGA-G3-A3CJ-01	SUGP1	ENST00000247001.5,ENST00000334782.5,ENST00000535070.1,ENST00000585763.1,ENST00000588731.2,ENST00000588580.2,ENST00000606725.1	chr19	19420905:19421009:19427230:19427402:19431271:19431279,	19427231	19427402	19427369	19427369	Frame_Shift_Del	G	-	p.P23fs
LIHC	TCGA-G3-A3CJ-01	PBX4	ENST00000251203.9,ENST00000557978.2	chr19	19672801:19672926:19674317:19674424:19675741:19675898,	19674318	19674424	19674389	19674389	Frame_Shift_Del	C	-	p.D321fs
LIHC	TCGA-G3-A3CJ-01	PBX4	ENST00000251203.9,ENST00000558222.1	chr19	19675741:19675898:19680257:19680393:19680917:19681108,	19680258	19680393	19680338	19680338	Frame_Shift_Del	A	-	p.Y230fs
LIHC	TCGA-G3-A3CJ-01	LPAR2	ENST00000407877.3	chr19	19734477:19735378:19737351:19738093:19738900:19738976,	19737352	19738093	19737514	19737514	Frame_Shift_Del	C	-	p.A194fs
LIHC	TCGA-G3-A3CJ-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-G3-A3CJ-01	ZNF93	ENST00000588146.1	chr19	20011869:20011900:20027368:20027464:20043990:20044083,	20027369	20027464	20027457	20027457	Frame_Shift_Del	C	-	p.N73fs
LIHC	TCGA-G3-A3CJ-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21299957	21299957	Frame_Shift_Del	A	-	p.K163fs
LIHC	TCGA-G3-A3CJ-01	ZNF738	ENST00000597810.1,ENST00000380870.4	chr19	21541831:21541945:21544567:21544660:21558039:21558166,	21544568	21544660	21544619	21544619	Frame_Shift_Del	G	-	p.G19fs
LIHC	TCGA-G3-A3CJ-01	ZNF43	ENST00000354959.4	chr19	22000719:22000788:22001896:22002023:22025946:22026128,22000719:22000788:22001896:22002023:22018837:22018989,	22001897	22002023	22001944	22001944	Frame_Shift_Del	A	-	p.L22fs
LIHC	TCGA-G3-A3CJ-01	CCNE1	ENST00000444983.2,ENST00000576532.1,ENST00000262643.3,ENST00000575243.1	chr19	30308312:30308448:30311608:30311755:30312628:30312675,	30311609	30311755	30311706	30311706	Frame_Shift_Del	T	-	p.L188fs
LIHC	TCGA-G3-A3CJ-01	DPY19L3	ENST00000585597.1,ENST00000342179.5,ENST00000586987.1,ENST00000392250.2,ENST00000588648.3	chr19	32944050:32944182:32945844:32945946:32949005:32949079,	32945845	32945946	32945898	32945898	Frame_Shift_Del	T	-	p.H347fs
LIHC	TCGA-G3-A3CJ-01	PDCD5	ENST00000590247.2,ENST00000586035.1,ENST00000221784.4,ENST00000586316.1	chr19	33075863:33075917:33076721:33076813:33077763:33077835,	33076722	33076813	33076757	33076757	Frame_Shift_Del	A	-	p.K68fs
LIHC	TCGA-G3-A3CJ-01	ANKRD27	ENST00000587352.1,ENST00000306065.4	chr19	33131212:33131291:33132929:33133051:33134028:33134105,	33132930	33133051	33132995	33132995	Frame_Shift_Del	G	-	p.P280fs
LIHC	TCGA-G3-A3CJ-01	SLC7A9	ENST00000587772.1,ENST00000590465.1,ENST00000590341.1,ENST00000023064.4	chr19	33333073:33333223:33334760:33334857:33349345:33349449,	33334761	33334857	33334844	33334844	Frame_Shift_Del	C	-	p.A331fs
LIHC	TCGA-G3-A3CJ-01	SLC7A10	ENST00000590036.1	chr19	33701707:33701804:33702130:33702234:33702319:33702443,33701372:33701522:33702130:33702234:33702319:33702443,	33702131	33702234	33702225	33702225	Frame_Shift_Del	C	-	p.E308fs
LIHC	TCGA-G3-A3CJ-01	SLC7A10	ENST00000590036.1	chr19	33703756:33703908:33706674:33706879:33716458:33716704,	33706675	33706879	33706805	33706805	Frame_Shift_Del	G	-	p.L76fs
LIHC	TCGA-G3-A3CJ-01	LSM14A	ENST00000544216.3,ENST00000433627.5	chr19	34687538:34687668:34699833:34699956:34706500:34706566,34687571:34687668:34699833:34699956:34706028:34706205,	34699834	34699956	34699937	34699937	Frame_Shift_Del	A	-	p.L173fs
LIHC	TCGA-G3-A3CJ-01	UBA2	ENST00000586313.1	chr19	34919388:34919475:34925772:34925873:34929549:34929648,	34925773	34925873	34925827	34925827	Frame_Shift_Del	A	-	p.E42fs
LIHC	TCGA-G3-A3CJ-01	FXYD3	ENST00000604255.1	chr19	35607223:35607263:35608160:35608282:35610071:35610155,	35608161	35608282	35608217	35608217	Frame_Shift_Del	G	-	p.R3fs
LIHC	TCGA-G3-A3CJ-01	FXYD3	ENST00000604255.1,ENST00000535103.1,ENST00000344013.6,ENST00000605552.1,ENST00000603181.1,ENST00000435734.2,ENST00000603524.1	chr19	35607223:35607263:35610266:35610320:35611981:35612014,35609433:35609503:35610266:35610320:35611981:35612014,35610125:35610155:35610266:35610320:35611981:35612014,	35610267	35610320	35610298	35610298	Frame_Shift_Del	G	-	p.L6fs
LIHC	TCGA-G3-A3CJ-01	LGI4	ENST00000310123.3,ENST00000493050.1	chr19	35615569:35616411:35617173:35617679:35617756:35617921,	35617174	35617679	35617182	35617182	Frame_Shift_Del	C	-	p.G456fs
LIHC	TCGA-G3-A3CJ-01	LGI4	ENST00000310123.3,ENST00000392225.3,ENST00000493050.1,ENST00000587780.1	chr19	35617756:35617921:35622289:35622459:35622692:35622761,	35622290	35622459	35622315	35622315	Frame_Shift_Del	G	-	p.P201fs
LIHC	TCGA-G3-A3CJ-01	FXYD5	ENST00000392219.2,ENST00000588699.1,ENST00000423817.3,ENST00000541435.2,ENST00000590686.1,ENST00000342879.3,ENST00000543307.1,ENST00000496493.1	chr19	35648328:35648404:35649246:35649303:35651611:35651704,	35649247	35649303	35649283	35649283	Frame_Shift_Del	C	-	p.T60fs
LIHC	TCGA-G3-A3CJ-01	FXYD5	ENST00000392219.2,ENST00000588699.1,ENST00000423817.3,ENST00000541435.2,ENST00000592290.1,ENST00000590686.1,ENST00000591716.2,ENST00000342879.3,ENST00000543307.1,ENST00000496493.1	chr19	35651665:35651704:35655058:35655148:35657044:35657074,	35655059	35655148	35655101	35655101	Frame_Shift_Del	C	-	p.S112fs
LIHC	TCGA-G3-A3CJ-01	USF2	ENST00000343550.5	chr19	35760705:35760906:35761349:35761500:35761620:35761708,35760503:35760602:35761349:35761500:35761620:35761708,	35761350	35761500	35761445	35761445	Frame_Shift_Del	G	-	p.V175fs
LIHC	TCGA-G3-A3CJ-01	USF2	ENST00000607959.1	chr19	35760503:35760602:35760705:35761500:35761620:35761708,	35760706	35761500	35761445	35761445	Frame_Shift_Del	G	-	p.V175fs
LIHC	TCGA-G3-A3CJ-01	HAMP	ENST00000598398.1,ENST00000222304.3	chr19	35773396:35773570:35775691:35775751:35775840:35776016,	35775692	35775751	35775716	35775716	Frame_Shift_Del	C	-	p.P39fs
LIHC	TCGA-G3-A3CJ-01	DMKN	ENST00000402589.2,ENST00000602679.1,ENST00000498593.1,ENST00000498211.1,ENST00000471786.2,ENST00000467637.1,ENST00000419602.1,ENST00000462126.1,ENST00000464709.2,ENST00000483855.1,ENST00000414866.2,ENST00000471017.1,ENST00000602781.1,ENST00000429837.1,ENST00000462721.1,ENST00000436012.1,ENST00000493979.1,ENST00000465927.1,ENST00000339686.3,ENST00000597212.1,ENST00000490622.1,ENST00000467532.1,ENST00000498269.1,ENST00000486450.1,ENST00000460051.1,ENST00000492341.2,ENST00000463292.1,ENST00000434389.1,ENST00000488542.2,ENST00000464894.1,ENST00000443640.1,ENST00000472252.2,ENST00000482321.1	chr19	35993037:35993085:35993731:35993788:35996619:35996667,	35993732	35993788	35993758	35993758	Frame_Shift_Del	G	-	p.L390fs
LIHC	TCGA-G3-A3CJ-01	SBSN	ENST00000518157.1	chr19	36015760:36015826:36017545:36017779:36018808:36019123,	36017546	36017779	36017702	36017702	Frame_Shift_Del	A	-	p.L494fs
LIHC	TCGA-G3-A3CJ-01	GAPDHS	ENST00000586334.1,ENST00000585510.1,ENST00000222286.4	chr19	36029208:36029305:36029478:36029585:36033220:36033311,	36029479	36029585	36029529	36029529	Frame_Shift_Del	G	-	p.V131fs
LIHC	TCGA-G3-A3CJ-01	TMEM147	ENST00000222284.5,ENST00000392205.1,ENST00000392204.2	chr19	36037585:36037710:36037846:36037931:36038020:36038142,	36037847	36037931	36037873	36037873	Frame_Shift_Del	G	-	p.R75fs
LIHC	TCGA-G3-A3CJ-01	TMEM147	ENST00000477168.2	chr19	36037427:36037487:36037573:36037931:36038020:36038142,	36037574	36037931	36037873	36037873	Frame_Shift_Del	G	-	p.R75fs
LIHC	TCGA-G3-A3CJ-01	ATP4A	ENST00000592131.1	chr19	36043942:36044084:36044607:36044751:36045823:36045978,	36044608	36044751	36044635	36044635	Frame_Shift_Del	G	-	p.L860fs
LIHC	TCGA-G3-A3CJ-01	ATP4A	ENST00000262623.3	chr19	36043942:36044084:36044607:36044731:36045823:36045978,	36044608	36044731	36044635	36044635	Frame_Shift_Del	G	-	p.L860fs
LIHC	TCGA-G3-A3CJ-01	RBM42	ENST00000262633.4	chr19	36122232:36122307:36123837:36123903:36123978:36124004,	36123838	36123903	36123844	36123844	Frame_Shift_Del	C	-	p.A150fs
LIHC	TCGA-G3-A3CJ-01	UPK1A	ENST00000222275.2	chr19	36157714:36157798:36159355:36159556:36164133:36164208,	36159356	36159556	36159390	36159390	Frame_Shift_Del	G	-	p.W40fs
LIHC	TCGA-G3-A3CJ-01	UPK1A	ENST00000222275.2	chr19	36157714:36157798:36159355:36159556:36164133:36164208,	36159356	36159556	36159418	36159418	Frame_Shift_Del	C	-	p.Y49fs
LIHC	TCGA-G3-A3CJ-01	PRODH2	ENST00000301175.3	chr19	36297331:36297498:36297576:36297732:36297942:36298023,	36297577	36297732	36297623	36297623	Frame_Shift_Del	C	-	p.G339fs
LIHC	TCGA-G3-A3CJ-01	PRODH2	ENST00000301175.3	chr19	36297331:36297498:36297576:36297732:36297942:36298023,	36297577	36297732	36297702	36297702	Frame_Shift_Del	C	-	p.V313fs
LIHC	TCGA-G3-A3CJ-01	PRODH2	ENST00000301175.3	chr19	36302896:36302950:36303035:36303174:36303261:36303458,	36303036	36303174	36303099	36303099	Frame_Shift_Del	G	-	p.P225fs
LIHC	TCGA-G3-A3CJ-01	APLP1	ENST00000221891.4,ENST00000590561.1	chr19	36368619:36368727:36368983:36369010:36369485:36369556,	36368984	36369010	36368990	36368990	Frame_Shift_Del	C	-	p.T520fs
LIHC	TCGA-G3-A3CJ-01	APLP1	ENST00000588808.1,ENST00000537454.2,ENST00000586861.1	chr19	36368619:36368727:36368986:36369010:36369485:36369556,	36368987	36369010	36368990	36368990	Frame_Shift_Del	C	-	p.T520fs
LIHC	TCGA-G3-A3CJ-01	SYNE4	ENST00000397428.3	chr19	36494211:36494422:36496234:36496339:36499455:36499521,	36496235	36496339	36496280	36496280	Frame_Shift_Del	T	-	p.K309fs
LIHC	TCGA-G3-A3CJ-01	SYNE4	ENST00000340477.5	chr19	36496234:36496339:36497324:36497573:36497651:36497837,36496234:36496339:36497324:36497573:36499118:36499269,	36497325	36497573	36497466	36497466	Frame_Shift_Del	G	-	p.P242fs
LIHC	TCGA-G3-A3CJ-01	THAP8	ENST00000538849.1,ENST00000522483.2	chr19	36526049:36526494:36530224:36530620:36545036:36545166,	36530225	36530620	36530605	36530605	Frame_Shift_Del	G	-	p.R98fs
LIHC	TCGA-G3-A3CJ-01	ZNF382	ENST00000292928.2	chr19	37098453:37098524:37100803:37100955:37101551:37101644,	37100804	37100955	37100844	37100844	Frame_Shift_Del	A	-	p.K10fs
LIHC	TCGA-G3-A3CJ-01	ZNF382	ENST00000439428.1	chr19	37098453:37098524:37100828:37100955:37101551:37101644,	37100829	37100955	37100844	37100844	Frame_Shift_Del	A	-	p.K10fs
LIHC	TCGA-G3-A3CJ-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37209936	37209936	Frame_Shift_Del	A	-	p.K74fs
LIHC	TCGA-G3-A3CJ-01	SIPA1L3	ENST00000222345.6	chr19	38519728:38519796:38571895:38573739:38579360:38579491,	38571896	38573739	38572578	38572578	Frame_Shift_Del	C	-	p.P126fs
LIHC	TCGA-G3-A3CJ-01	CATSPERG	ENST00000412458.2,ENST00000410018.1,ENST00000215069.4,ENST00000409235.3,ENST00000312265.5	chr19	38853015:38853214:38853353:38853472:38855530:38855611,	38853354	38853472	38853455	38853455	Frame_Shift_Del	A	-	p.N820fs
LIHC	TCGA-G3-A3CJ-01	CATSPERG	ENST00000471517.1	chr19	38852849:38852912:38853015:38853472:38855530:38855611,	38853016	38853472	38853455	38853455	Frame_Shift_Del	A	-	p.N820fs
LIHC	TCGA-G3-A3CJ-01	SPRED3	ENST00000587947.1	chr19	38880694:38880792:38880938:38881119:38882585:38882754,	38880939	38881119	38881012	38881012	Frame_Shift_Del	G	-	p.G25fs
LIHC	TCGA-G3-A3CJ-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39068783:39068844:39070621:39070768:39071009:39071144,	39070622	39070768	39070714	39070714	Frame_Shift_Del	G	-	p.M4814fs
LIHC	TCGA-G3-A3CJ-01	MAP4K1	ENST00000589130.1,ENST00000591921.1,ENST00000396857.2,ENST00000591517.1	chr19	39087965:39088024:39088125:39088234:39090564:39090625,	39088126	39088234	39088142	39088142	Frame_Shift_Del	G	-	p.H588fs
LIHC	TCGA-G3-A3CJ-01	MAP4K1	ENST00000589130.1,ENST00000423454.2,ENST00000591921.1,ENST00000585583.1,ENST00000396857.2,ENST00000591517.1	chr19	39096048:39096131:39096207:39096370:39096812:39096855,	39096208	39096370	39096325	39096325	Frame_Shift_Del	C	-	p.D417fs
LIHC	TCGA-G3-A3CJ-01	ACTN4	ENST00000588618.1,ENST00000252699.2,ENST00000495553.1	chr19	39191239:39191354:39191641:39191761:39195573:39195660,	39191642	39191761	39191686	39191686	Frame_Shift_Del	A	-	p.K108fs
LIHC	TCGA-G3-A3CJ-01	HNRNPL	ENST00000601047.1,ENST00000600873.1,ENST00000598985.1,ENST00000388749.3	chr19	39336492:39336730:39337955:39338074:39342935:39342965,	39337956	39338074	39338029	39338029	Frame_Shift_Del	G	-	p.H105fs
LIHC	TCGA-G3-A3CJ-01	FBXO27	ENST00000509137.2,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39517509:39517645:39521668:39521764:39521848:39521957,	39521669	39521764	39521757	39521757	Frame_Shift_Del	A	-	p.C162fs
LIHC	TCGA-G3-A3CJ-01	PAK4	ENST00000358301.3,ENST00000599470.1,ENST00000599386.1,ENST00000321944.4,ENST00000435673.2,ENST00000593690.1,ENST00000360442.3	chr19	39664215:39664650:39665570:39665704:39665951:39666078,	39665571	39665704	39665633	39665633	Frame_Shift_Del	G	-	p.V234fs
LIHC	TCGA-G3-A3CJ-01	GMFG	ENST00000602185.1	chr19	39820245:39820266:39823716:39823766:39826074:39826143,39820245:39820266:39823716:39823766:39825900:39825945,39819688:39819713:39823716:39823766:39825900:39825945,39820245:39820266:39823716:39823766:39826613:39826645,	39823717	39823766	39823756	39823756	Frame_Shift_Del	G	-	p.P54fs
LIHC	TCGA-G3-A3CJ-01	SAMD4B	ENST00000602243.1,ENST00000599712.1,ENST00000314471.6	chr19	39833107:39833216:39847328:39847729:39860294:39860323,39844645:39844706:39847328:39847729:39860294:39860323,	39847329	39847729	39847624	39847624	Frame_Shift_Del	A	-	p.K31fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG2	ENST00000458508.2,ENST00000205135.4,ENST00000409794.3,ENST00000425673.1	chr19	39911922:39911939:39912754:39912928:39913371:39913468,	39912755	39912928	39912845	39912845	Frame_Shift_Del	C	-	p.P504fs
LIHC	TCGA-G3-A3CJ-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39915121	39915121	Frame_Shift_Del	A	-	p.G1087fs
LIHC	TCGA-G3-A3CJ-01	ZNF780B	ENST00000598845.1	chr19	40553312:40553377:40554576:40554703:40556230:40556284,40553312:40553380:40554576:40554703:40556230:40556284,	40554577	40554703	40554616	40554616	Frame_Shift_Del	C	-	p.D33fs
LIHC	TCGA-G3-A3CJ-01	AKT2	ENST00000578615.1	chr19	40743896:40743998:40744811:40744880:40745951:40746017,40743896:40743998:40744811:40744880:40747844:40747846,	40744812	40744880	40744816	40744816	Frame_Shift_Del	C	-	p.G235fs
LIHC	TCGA-G3-A3CJ-01	SPTBN4	ENST00000593816.1	chr19	41077924:41078098:41078243:41078538:41081316:41081475,	41078244	41078538	41078263	41078263	Frame_Shift_Del	T	-	p.F2505fs
LIHC	TCGA-G3-A3CJ-01	SPTBN4	ENST00000599926.1,ENST00000352632.3,ENST00000392025.1,ENST00000598249.1,ENST00000595690.1,ENST00000597389.1	chr19	41077924:41078098:41078243:41078286:41081316:41081475,	41078244	41078286	41078263	41078263	Frame_Shift_Del	T	-	p.F2505fs
LIHC	TCGA-G3-A3CJ-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000396819.3,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000602240.1	chr19	41114125:41114275:41114389:41114509:41115435:41115567,	41114390	41114509	41114402	41114402	Frame_Shift_Del	C	-	p.T507fs
LIHC	TCGA-G3-A3CJ-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000396819.3,ENST00000598256.1,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000602240.1	chr19	41116437:41116563:41117057:41117300:41117764:41117828,	41117058	41117300	41117099	41117099	Frame_Shift_Del	G	-	p.G685fs
LIHC	TCGA-G3-A3CJ-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000396819.3,ENST00000598717.1,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000602240.1	chr19	41117279:41117300:41117764:41117890:41117978:41118098,	41117765	41117890	41117787	41117787	Frame_Shift_Del	C	-	p.S759fs
LIHC	TCGA-G3-A3CJ-01	NUMBL	ENST00000600967.1	chr19	41179456:41179554:41183136:41183326:41186821:41186962,41179348:41179551:41183136:41183326:41186821:41186962,	41183137	41183326	41183151	41183151	Frame_Shift_Del	G	-	p.P239fs
LIHC	TCGA-G3-A3CJ-01	CYP2S1	ENST00000600561.1	chr19	41699151:41699346:41700448:41700614:41707135:41707204,41699151:41699346:41700448:41700614:41703683:41703833,	41700449	41700614	41700493	41700493	Frame_Shift_Del	G	-	p.P74fs
LIHC	TCGA-G3-A3CJ-01	CYP2S1	ENST00000310054.4	chr19	41703683:41703833:41704366:41704527:41704613:41704793,	41704367	41704527	41704385	41704385	Frame_Shift_Del	C	-	p.S171fs
LIHC	TCGA-G3-A3CJ-01	AXL	ENST00000593513.1,ENST00000359092.3,ENST00000599659.1,ENST00000301178.4	chr19	41743848:41744059:41744374:41744514:41745068:41745219,	41744375	41744514	41744446	41744446	Frame_Shift_Del	C	-	p.P356fs
LIHC	TCGA-G3-A3CJ-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000597725.1,ENST00000600596.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1,ENST00000594207.1,ENST00000599719.1	chr19	41779937:41779960:41782063:41782203:41784981:41785081,	41782064	41782203	41782122	41782122	Frame_Shift_Del	A	-	p.T235fs
LIHC	TCGA-G3-A3CJ-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1,ENST00000599719.1	chr19	41787067:41787180:41798149:41798416:41800242:41800293,	41798150	41798416	41798224	41798224	Frame_Shift_Del	C	-	p.I358fs
LIHC	TCGA-G3-A3CJ-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1,ENST00000599719.1	chr19	41787067:41787180:41798149:41798416:41800242:41800293,	41798150	41798416	41798239	41798239	Frame_Shift_Del	G	-	p.L363fs
LIHC	TCGA-G3-A3CJ-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41800462:41800591:41807440:41807609:41808569:41808854,	41807441	41807609	41807470	41807470	Frame_Shift_Del	A	-	p.R516fs
LIHC	TCGA-G3-A3CJ-01	CCDC97	ENST00000269967.3	chr19	41822288:41822744:41825478:41825757:41826245:41826375,	41825479	41825757	41825595	41825595	Frame_Shift_Del	C	-	p.P208fs
LIHC	TCGA-G3-A3CJ-01	EXOSC5	ENST00000593523.1	chr19	41897794:41897867:41898771:41898885:41903085:41903161,	41898772	41898885	41898822	41898822	Frame_Shift_Del	A	-	p.F71fs
LIHC	TCGA-G3-A3CJ-01	CEACAM21	ENST00000457737.1	chr19	42083551:42083911:42085622:42085981:42090702:42090796,	42085623	42085981	42085670	42085670	Frame_Shift_Del	C	-	p.A2fs
LIHC	TCGA-G3-A3CJ-01	CEACAM6	ENST00000199764.6	chr19	42265156:42265435:42265876:42266131:42270090:42270203,	42265877	42266131	42265888	42265888	Frame_Shift_Del	G	-	p.G239fs
LIHC	TCGA-G3-A3CJ-01	ATP1A3	ENST00000543770.1,ENST00000441343.1,ENST00000302102.5,ENST00000602133.1,ENST00000545399.1	chr19	42482302:42482478:42482757:42482950:42485653:42485788,	42482758	42482950	42482798	42482798	Frame_Shift_Del	A	-	p.N543fs
LIHC	TCGA-G3-A3CJ-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791696:42791879:42791961:42792127:42793039:42793242,	42791962	42792127	42792119	42792119	Frame_Shift_Del	C	-	p.A1217fs
LIHC	TCGA-G3-A3CJ-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42863249:42863394:42864926:42865158:42866241:42866365,	42864927	42865158	42864940	42864940	Frame_Shift_Del	G	-	p.V1767fs
LIHC	TCGA-G3-A3CJ-01	LIPE	ENST00000244289.4	chr19	42909536:42909713:42910312:42910540:42911325:42911378,	42910313	42910540	42910359	42910359	Frame_Shift_Del	G	-	p.P773fs
LIHC	TCGA-G3-A3CJ-01	LIPE	ENST00000599783.1	chr19	42912462:42912474:42914458:42914994:42927570:42928275,	42914459	42914994	42914560	42914560	Frame_Shift_Del	C	-	p.V440fs
LIHC	TCGA-G3-A3CJ-01	PSG6	ENST00000402603.4,ENST00000292125.2,ENST00000402456.4	chr19	43414731:43415010:43420276:43420639:43421880:43422039,	43420277	43420639	43420526	43420526	Frame_Shift_Del	G	-	p.Q60fs
LIHC	TCGA-G3-A3CJ-01	PSG5	ENST00000599812.1,ENST00000407356.1,ENST00000366175.3,ENST00000342951.6	chr19	43674206:43674290:43679366:43679621:43680021:43680300,	43679367	43679621	43679514	43679514	Frame_Shift_Del	A	-	p.W273fs
LIHC	TCGA-G3-A3CJ-01	ZNF227	ENST00000586228.1	chr19	44717242:44717397:44721943:44722005:44732598:44732721,44717242:44717397:44721943:44722005:44732639:44732725,	44721944	44722005	44721988	44721988	Frame_Shift_Del	A	-	p.K15fs
LIHC	TCGA-G3-A3CJ-01	CEACAM19	ENST00000480278.1,ENST00000403660.3,ENST00000358777.4	chr19	45179542:45179693:45182124:45182208:45183559:45183606,	45182125	45182208	45182139	45182139	Frame_Shift_Del	G	-	p.R197fs
LIHC	TCGA-G3-A3CJ-01	BCL3	ENST00000403534.3,ENST00000164227.5,ENST00000444487.1	chr19	45260583:45260672:45260902:45260980:45261502:45261670,	45260903	45260980	45260943	45260943	Frame_Shift_Del	A	-	p.E285fs
LIHC	TCGA-G3-A3CJ-01	BCAM	ENST00000590196.1	chr19	45316694:45316877:45317860:45318017:45321778:45321894,	45317861	45318017	45317896	45317896	Frame_Shift_Del	G	-	p.E319fs
LIHC	TCGA-G3-A3CJ-01	BCAM	ENST00000270233.6,ENST00000589651.1	chr19	45321787:45321894:45321997:45322139:45322312:45322449,	45321998	45322139	45322007	45322007	Frame_Shift_Del	C	-	p.P402fs
LIHC	TCGA-G3-A3CJ-01	BCAM	ENST00000270233.6,ENST00000589651.1	chr19	45321787:45321894:45321997:45322139:45322312:45322449,	45321998	45322139	45322096	45322096	Frame_Shift_Del	C	-	p.V431fs
LIHC	TCGA-G3-A3CJ-01	RELB	ENST00000221452.8,ENST00000505236.1,ENST00000540120.1	chr19	45532145:45532250:45535791:45536007:45537501:45537570,	45535792	45536007	45535893	45535893	Frame_Shift_Del	C	-	p.P365fs
LIHC	TCGA-G3-A3CJ-01	MARK4	ENST00000588621.1,ENST00000592207.1,ENST00000262891.4,ENST00000300843.4	chr19	45781238:45781300:45781773:45781873:45783631:45783741,	45781774	45781873	45781789	45781789	Frame_Shift_Del	A	-	p.K308fs
LIHC	TCGA-G3-A3CJ-01	ERCC2	ENST00000391944.3	chr19	45867493:45867589:45867681:45867805:45868095:45868212,45867493:45867589:45867681:45867805:45871887:45872001,	45867682	45867805	45867755	45867755	Frame_Shift_Del	G	-	p.P215fs
LIHC	TCGA-G3-A3CJ-01	PPP1R13L	ENST00000418234.2,ENST00000587270.1,ENST00000360957.5	chr19	45882895:45883486:45885784:45885984:45888819:45888876,	45885785	45885984	45885910	45885910	Frame_Shift_Del	C	-	p.D775fs
LIHC	TCGA-G3-A3CJ-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996573	45996573	Frame_Shift_Del	A	-	p.L19fs
LIHC	TCGA-G3-A3CJ-01	PPM1N	ENST00000456399.2	chr19	46000508:46000601:46003211:46003324:46003713:46003819,	46003212	46003324	46003249	46003249	Frame_Shift_Del	G	-	p.G328fs
LIHC	TCGA-G3-A3CJ-01	PPM1N	ENST00000396735.2	chr19	46000508:46000601:46003206:46003324:46003713:46003819,46002867:46002983:46003206:46003324:46003713:46003819,	46003207	46003324	46003249	46003249	Frame_Shift_Del	G	-	p.G328fs
LIHC	TCGA-G3-A3CJ-01	VASP	ENST00000245932.6	chr19	46020920:46021092:46021186:46021352:46024579:46024664,	46021187	46021352	46021313	46021313	Frame_Shift_Del	T	-	p.F102fs
LIHC	TCGA-G3-A3CJ-01	VASP	ENST00000245932.6	chr19	46021186:46021352:46024579:46024664:46025425:46025475,	46024580	46024664	46024588	46024588	Frame_Shift_Del	C	-	p.P122fs
LIHC	TCGA-G3-A3CJ-01	EML2	ENST00000590819.1	chr19	46124811:46124895:46127976:46128076:46129962:46130010,46124464:46124590:46127976:46128076:46129962:46130010,	46127977	46128076	46127982	46127982	Frame_Shift_Del	C	-	p.G426fs
LIHC	TCGA-G3-A3CJ-01	EML2	ENST00000587804.1	chr19	46133221:46133304:46136118:46136397:46137579:46137729,	46136119	46136397	46136217	46136217	Frame_Shift_Del	G	-	p.H285fs
LIHC	TCGA-G3-A3CJ-01	NOVA2	ENST00000263257.5,ENST00000596784.1	chr19	46444151:46444203:46457037:46457204:46464267:46464411,	46457038	46457204	46457053	46457053	Frame_Shift_Del	G	-	p.P127fs
LIHC	TCGA-G3-A3CJ-01	CCDC61	ENST00000596687.1	chr19	46498745:46498762:46506265:46506424:46509816:46509974,	46506266	46506424	46506317	46506317	Frame_Shift_Del	G	-	p.R71fs
LIHC	TCGA-G3-A3CJ-01	STRN4	ENST00000594287.2,ENST00000595357.1,ENST00000600615.1,ENST00000263280.6,ENST00000391910.3,ENST00000594581.1,ENST00000539396.1	chr19	47225594:47225597:47226066:47226207:47226370:47226468,	47226067	47226207	47226075	47226075	Frame_Shift_Del	C	-	p.G640fs
LIHC	TCGA-G3-A3CJ-01	STRN4	ENST00000594287.2,ENST00000595357.1,ENST00000601631.2,ENST00000263280.6,ENST00000600358.3,ENST00000391910.3,ENST00000594581.1,ENST00000539396.1,ENST00000594357.2	chr19	47228084:47228185:47228588:47228636:47228729:47228889,	47228589	47228636	47228617	47228617	Frame_Shift_Del	C	-	p.E489fs
LIHC	TCGA-G3-A3CJ-01	STRN4	ENST00000435164.2	chr19	47231163:47231264:47231874:47232034:47233988:47234114,47231150:47231383:47231874:47232034:47233988:47234114,	47231875	47232034	47231957	47231957	Frame_Shift_Del	A	-	p.F319fs
LIHC	TCGA-G3-A3CJ-01	STRN4	ENST00000597021.2,ENST00000597063.2,ENST00000263280.6,ENST00000600358.3,ENST00000435164.2,ENST00000596012.2,ENST00000391910.3,ENST00000593979.2,ENST00000539396.1	chr19	47236456:47236493:47240079:47240158:47241420:47241429,	47240080	47240158	47240145	47240145	Frame_Shift_Del	G	-	p.P158fs
LIHC	TCGA-G3-A3CJ-01	ZC3H4	ENST00000253048.5	chr19	47567448:47571126:47572348:47572600:47575034:47575378,	47572349	47572600	47572568	47572568	Frame_Shift_Del	C	-	p.E727fs
LIHC	TCGA-G3-A3CJ-01	CCDC9	ENST00000221922.6,ENST00000600117.1	chr19	47769867:47770049:47773663:47773710:47773809:47773844,	47773664	47773710	47773676	47773676	Frame_Shift_Del	C	-	p.G305fs
LIHC	TCGA-G3-A3CJ-01	DHX34	ENST00000328771.4,ENST00000460681.1	chr19	47884072:47884249:47884442:47884581:47885236:47885536,	47884443	47884581	47884553	47884553	Frame_Shift_Del	C	-	p.C1090fs
LIHC	TCGA-G3-A3CJ-01	KPTN	ENST00000598699.1	chr19	47986551:47986636:47986758:47986841:47987191:47987270,47986551:47986636:47986758:47986841:47987085:47987151,	47986759	47986841	47986795	47986795	Frame_Shift_Del	G	-	p.P91fs
LIHC	TCGA-G3-A3CJ-01	ZNF541	ENST00000391901.3	chr19	48036165:48036229:48041398:48041696:48043432:48043592,48036165:48036229:48041398:48041696:48042961:48043135,	48041399	48041696	48041623	48041623	Frame_Shift_Del	G	-	p.P977fs
LIHC	TCGA-G3-A3CJ-01	ZNF541	ENST00000314121.4	chr19	48036165:48036229:48041398:48041753:48042961:48043135,	48041399	48041753	48041623	48041623	Frame_Shift_Del	G	-	p.P977fs
LIHC	TCGA-G3-A3CJ-01	PLA2G4C	ENST00000599111.1,ENST00000599921.1,ENST00000596510.1,ENST00000413144.2,ENST00000354276.3	chr19	48556253:48556404:48558134:48558306:48565254:48565409,	48558135	48558306	48558214	48558214	Frame_Shift_Del	G	-	p.P450fs
LIHC	TCGA-G3-A3CJ-01	PLA2G4C	ENST00000601946.1,ENST00000599111.1,ENST00000599921.1,ENST00000413144.2,ENST00000354276.3,ENST00000599300.1	chr19	48571047:48571143:48578023:48578131:48581027:48581081,	48578024	48578131	48578034	48578034	Frame_Shift_Del	G	-	p.P332fs
LIHC	TCGA-G3-A3CJ-01	CARD8	ENST00000518622.1,ENST00000447740.2,ENST00000521613.1,ENST00000517510.1,ENST00000359009.4,ENST00000522773.1,ENST00000519646.1,ENST00000519940.1,ENST00000520153.1,ENST00000523579.1,ENST00000521415.1,ENST00000391898.3,ENST00000522051.1,ENST00000357778.5	chr19	48718596:48718641:48722127:48722269:48724986:48725112,	48722128	48722269	48722159	48722159	Frame_Shift_Del	C	-	p.G424fs
LIHC	TCGA-G3-A3CJ-01	LMTK3	ENST00000270238.3	chr19	49013279:49013430:49013715:49013849:49014757:49014870,	49013716	49013849	49013793	49013793	Frame_Shift_Del	A	-	p.S45fs
LIHC	TCGA-G3-A3CJ-01	FAM83E	ENST00000593772.1	chr19	49114047:49114104:49116164:49116564:49117964:49118072,	49116165	49116564	49116555	49116555	Frame_Shift_Del	A	-	p.F25fs
LIHC	TCGA-G3-A3CJ-01	SPHK2	ENST00000601712.1	chr19	49123658:49123810:49129206:49129619:49130948:49131098,	49129207	49129619	49129287	49129287	Frame_Shift_Del	C	-	p.A122fs
LIHC	TCGA-G3-A3CJ-01	SPHK2	ENST00000598088.1,ENST00000245222.4,ENST00000340932.3	chr19	49123771:49123810:49129147:49129619:49130948:49131098,	49129148	49129619	49129287	49129287	Frame_Shift_Del	C	-	p.A122fs
LIHC	TCGA-G3-A3CJ-01	SPHK2	ENST00000443164.1,ENST00000599029.1	chr19	49131418:49131534:49131937:49132983:49133690:49133973,	49131938	49132983	49132347	49132347	Frame_Shift_Del	C	-	p.P490fs
LIHC	TCGA-G3-A3CJ-01	DBP	ENST00000222122.5	chr19	49133987:49134309:49136700:49136912:49138836:49139247,	49136701	49136912	49136724	49136724	Frame_Shift_Del	T	-	p.I247fs
LIHC	TCGA-G3-A3CJ-01	NTN5	ENST00000596844.1,ENST00000270235.4	chr19	49165221:49165298:49166719:49166800:49167017:49167071,	49166720	49166800	49166785	49166785	Frame_Shift_Del	T	-	p.N347fs
LIHC	TCGA-G3-A3CJ-01	RASIP1	ENST00000222145.4	chr19	49230041:49230145:49230263:49230415:49230649:49230687,	49230264	49230415	49230387	49230387	Frame_Shift_Del	G	-	p.L634fs
LIHC	TCGA-G3-A3CJ-01	PLEKHA4	ENST00000263265.6	chr19	49341273:49341386:49344405:49344567:49348626:49348703,49342461:49342520:49344405:49344567:49348626:49348703,	49344406	49344567	49344553	49344553	Frame_Shift_Del	C	-	p.R586fs
LIHC	TCGA-G3-A3CJ-01	TULP2	ENST00000221399.3	chr19	49388704:49388817:49391206:49391518:49392766:49392888,	49391207	49391518	49391465	49391465	Frame_Shift_Del	G	-	p.S231fs
LIHC	TCGA-G3-A3CJ-01	BAX	ENST00000391871.3,ENST00000415969.2,ENST00000293288.8,ENST00000345358.7,ENST00000502487.1,ENST00000503726.1,ENST00000513545.1	chr19	49458804:49458856:49459454:49459590:49464066:49464092,49458185:49458219:49459454:49459590:49464066:49464092,49458943:49459090:49459454:49459590:49464066:49464092,	49459455	49459590	49459559	49459559	Frame_Shift_Del	T	-	p.L113fs
LIHC	TCGA-G3-A3CJ-01	SNRNP70	ENST00000598441.1,ENST00000401730.1,ENST00000597936.1,ENST00000595231.1,ENST00000221448.5	chr19	49588751:49588893:49589661:49589818:49593547:49593610,	49589662	49589818	49589763	49589763	Frame_Shift_Del	A	-	p.E31fs
LIHC	TCGA-G3-A3CJ-01	PPFIA3	ENST00000602351.1,ENST00000334186.4	chr19	49639980:49640168:49641461:49641684:49642924:49643088,	49641462	49641684	49641574	49641574	Frame_Shift_Del	C	-	p.P657fs
LIHC	TCGA-G3-A3CJ-01	ALDH16A1	ENST00000433981.2,ENST00000540132.1,ENST00000593417.1,ENST00000293350.4	chr19	49964078:49964156:49964875:49965057:49965140:49965293,	49964876	49965057	49964952	49964952	Frame_Shift_Del	C	-	p.G218fs
LIHC	TCGA-G3-A3CJ-01	RPL13A	ENST00000479992.1	chr19	49993106:49993179:49993488:49993833:49994035:49994108,	49993489	49993833	49993801	49993801	Frame_Shift_Del	C	-	p.A75fs
LIHC	TCGA-G3-A3CJ-01	RPL13A	ENST00000467825.2	chr19	49993488:49993554:49993731:49993857:49994035:49994121,	49993732	49993857	49993801	49993801	Frame_Shift_Del	C	-	p.A75fs
LIHC	TCGA-G3-A3CJ-01	RPL13A	ENST00000484279.1,ENST00000477613.2,ENST00000391857.4,ENST00000472481.1,ENST00000486930.1	chr19	49993488:49993554:49993731:49993833:49994035:49994108,	49993732	49993833	49993801	49993801	Frame_Shift_Del	C	-	p.A75fs
LIHC	TCGA-G3-A3CJ-01	RPS11	ENST00000602252.1,ENST00000601216.1	chr19	49999710:49999728:50000450:50000852:50001173:50001303,	50000451	50000852	50000484	50000484	Frame_Shift_Del	T	-	p.F17fs
LIHC	TCGA-G3-A3CJ-01	RPS11	ENST00000594493.1	chr19	49999710:49999728:50000429:50000582:50000776:50000787,	50000430	50000582	50000484	50000484	Frame_Shift_Del	T	-	p.F17fs
LIHC	TCGA-G3-A3CJ-01	RPS11	ENST00000596873.1,ENST00000270625.2	chr19	49999710:49999728:50000450:50000582:50000776:50000787,	50000451	50000582	50000484	50000484	Frame_Shift_Del	T	-	p.F17fs
LIHC	TCGA-G3-A3CJ-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156361	50156361	Frame_Shift_Del	G	-	p.K905fs
LIHC	TCGA-G3-A3CJ-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156380	50156380	Frame_Shift_Del	A	-	p.K912fs
LIHC	TCGA-G3-A3CJ-01	AP2A1	ENST00000359032.5,ENST00000354293.5	chr19	50303353:50303407:50304217:50304315:50304646:50304878,	50304218	50304315	50304304	50304304	Frame_Shift_Del	C	-	p.D514fs
LIHC	TCGA-G3-A3CJ-01	FUZ	ENST00000528094.1,ENST00000445575.2,ENST00000525130.1,ENST00000527973.1,ENST00000313777.4,ENST00000533418.1,ENST00000377092.4,ENST00000525370.1	chr19	50311973:50312080:50312419:50312515:50312634:50312832,	50312420	50312515	50312445	50312445	Frame_Shift_Del	G	-	p.P255fs
LIHC	TCGA-G3-A3CJ-01	MED25	ENST00000312865.6,ENST00000538643.1	chr19	50333767:50333855:50333950:50334144:50334589:50334718,	50333951	50334144	50333963	50333963	Frame_Shift_Del	C	-	p.T307fs
LIHC	TCGA-G3-A3CJ-01	MED25	ENST00000593767.1	chr19	50338983:50339202:50339482:50339663:50341836:50342073,	50339483	50339663	50339642	50339642	Frame_Shift_Del	C	-	p.P710fs
LIHC	TCGA-G3-A3CJ-01	PNKP	ENST00000600910.1,ENST00000594661.1,ENST00000322344.3,ENST00000596014.1,ENST00000593946.1,ENST00000600573.1	chr19	50367580:50367660:50368383:50368683:50369655:50369702,	50368384	50368683	50368617	50368617	Frame_Shift_Del	C	-	p.V89fs
LIHC	TCGA-G3-A3CJ-01	AKT1S1	ENST00000391832.3,ENST00000391835.1,ENST00000344175.5,ENST00000391831.1,ENST00000391834.2	chr19	50374803:50374973:50375068:50375146:50376173:50376559,	50375069	50375146	50375100	50375100	Frame_Shift_Del	G	-	p.P142fs
LIHC	TCGA-G3-A3CJ-01	ATF5	ENST00000423777.2,ENST00000595125.1	chr19	50432499:50432657:50433988:50434285:50435678:50435865,	50433989	50434285	50434197	50434197	Frame_Shift_Del	C	-	p.L30fs
LIHC	TCGA-G3-A3CJ-01	ATF5	ENST00000423777.2,ENST00000595125.1	chr19	50432499:50432657:50433988:50434285:50435678:50435865,	50433989	50434285	50434205	50434205	Frame_Shift_Del	C	-	p.A33fs
LIHC	TCGA-G3-A3CJ-01	VRK3	ENST00000596814.1,ENST00000316763.3,ENST00000594090.1,ENST00000593919.1,ENST00000377011.2,ENST00000594948.1,ENST00000594092.1,ENST00000600284.1,ENST00000601341.1,ENST00000599538.1,ENST00000601912.1,ENST00000443401.2,ENST00000593912.1	chr19	50491628:50491749:50492895:50493028:50496116:50496167,	50492896	50493028	50492946	50492946	Frame_Shift_Del	G	-	p.P349fs
LIHC	TCGA-G3-A3CJ-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862306	50862306	Frame_Shift_Del	C	-	p.V333fs
LIHC	TCGA-G3-A3CJ-01	NAPSA	ENST00000598915.1	chr19	50864919:50865038:50865225:50865349:50865428:50865570,50864919:50865011:50865225:50865349:50865428:50865570,	50865226	50865349	50865306	50865306	Frame_Shift_Del	T	-	p.N90fs
LIHC	TCGA-G3-A3CJ-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000599857.1,ENST00000595904.1	chr19	50905034:50905181:50905255:50905381:50905461:50905630,	50905256	50905381	50905362	50905362	Frame_Shift_Del	G	-	p.V190fs
LIHC	TCGA-G3-A3CJ-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926214	50926214	Frame_Shift_Del	G	-	p.G87fs
LIHC	TCGA-G3-A3CJ-01	ASPDH	ENST00000601207.1	chr19	51015616:51015837:51016183:51016268:51017747:51017881,	51016184	51016268	51016213	51016213	Frame_Shift_Del	C	-	p.A85fs
LIHC	TCGA-G3-A3CJ-01	ASPDH	ENST00000389208.4	chr19	51016183:51016268:51016528:51016673:51017028:51017142,	51016529	51016673	51016568	51016568	Frame_Shift_Del	G	-	p.P53fs
LIHC	TCGA-G3-A3CJ-01	ASPDH	ENST00000389208.4	chr19	51016183:51016268:51016528:51016673:51017028:51017142,	51016529	51016673	51016612	51016612	Frame_Shift_Del	A	-	p.F38fs
LIHC	TCGA-G3-A3CJ-01	KLK6	ENST00000391808.1,ENST00000594641.1,ENST00000376851.3,ENST00000310157.2,ENST00000599690.1	chr19	51464999:51465136:51466557:51466805:51470424:51470581,	51466558	51466805	51466716	51466716	Frame_Shift_Del	G	-	p.P96fs
LIHC	TCGA-G3-A3CJ-01	KLK6	ENST00000594641.1,ENST00000376851.3,ENST00000310157.2	chr19	51462413:51462572:51470424:51470581:51471320:51471368,51466722:51466805:51470424:51470581:51471796:51471847,51466722:51466805:51470424:51470581:51471320:51471368,	51470425	51470581	51470494	51470494	Frame_Shift_Del	C	-	p.G43fs
LIHC	TCGA-G3-A3CJ-01	KLK11	ENST00000594827.1,ENST00000319756.3,ENST00000594458.1	chr19	51527558:51527566:51527889:51528050:51528847:51528890,	51527890	51528050	51528005	51528005	Frame_Shift_Del	T	-	p.K61fs
LIHC	TCGA-G3-A3CJ-01	KLK11	ENST00000453757.3,ENST00000594768.1,ENST00000319720.7,ENST00000598799.1,ENST00000601671.1	chr19	51527558:51527566:51527893:51528050:51528847:51528890,	51527894	51528050	51528005	51528005	Frame_Shift_Del	T	-	p.K61fs
LIHC	TCGA-G3-A3CJ-01	VSIG10L	ENST00000335624.4,ENST00000600663.1	chr19	51837044:51837199:51837444:51837558:51840491:51840788,	51837445	51837558	51837472	51837472	Frame_Shift_Del	A	-	p.C798fs
LIHC	TCGA-G3-A3CJ-01	SIGLEC12	ENST00000291707.3,ENST00000598614.1,ENST00000596742.1	chr19	52000133:52000230:52000602:52000699:52001271:52001541,	52000603	52000699	52000654	52000654	Frame_Shift_Del	C	-	p.G484fs
LIHC	TCGA-G3-A3CJ-01	ZNF577	ENST00000420592.1,ENST00000451628.2,ENST00000458390.1,ENST00000412216.1,ENST00000301399.5	chr19	52380534:52380630:52381641:52381768:52383575:52383642,	52381642	52381768	52381710	52381710	Frame_Shift_Del	A	-	p.L40fs
LIHC	TCGA-G3-A3CJ-01	ZNF480	ENST00000334564.7	chr19	52803646:52803737:52817405:52817532:52819086:52819215,52803646:52803737:52817405:52817532:52824831:52824900,	52817406	52817532	52817422	52817422	Frame_Shift_Del	G	-	p.R30fs
LIHC	TCGA-G3-A3CJ-01	ZNF415	ENST00000598578.1,ENST00000600120.1	chr19	53618510:53618585:53618956:53619177:53619565:53619686,53613129:53613161:53618956:53619177:53619565:53619686,	53618957	53619177	53618981	53618981	Frame_Shift_Del	C	-	p.E74fs
LIHC	TCGA-G3-A3CJ-01	ZNF415	ENST00000440291.1	chr19	53618462:53618560:53618956:53619064:53619565:53619686,53618510:53618585:53618956:53619064:53619565:53619686,53613129:53613161:53618956:53619064:53619565:53619686,	53618957	53619064	53618981	53618981	Frame_Shift_Del	C	-	p.E74fs
LIHC	TCGA-G3-A3CJ-01	ZNF415	ENST00000598578.1,ENST00000600120.1	chr19	53618510:53618585:53618956:53619177:53619565:53619686,53613129:53613161:53618956:53619177:53619565:53619686,	53618957	53619177	53619030	53619030	Frame_Shift_Del	G	-	p.P57fs
LIHC	TCGA-G3-A3CJ-01	ZNF415	ENST00000440291.1	chr19	53618462:53618560:53618956:53619064:53619565:53619686,53618510:53618585:53618956:53619064:53619565:53619686,53613129:53613161:53618956:53619064:53619565:53619686,	53618957	53619064	53619030	53619030	Frame_Shift_Del	G	-	p.P57fs
LIHC	TCGA-G3-A3CJ-01	NLRP12	ENST00000492915.1,ENST00000391775.3	chr19	54296996:54297390:54299112:54299283:54301496:54301667,54296996:54297390:54299112:54299283:54304480:54304651,	54299113	54299283	54299177	54299177	Frame_Shift_Del	C	-	p.D1012fs
LIHC	TCGA-G3-A3CJ-01	PRKCG	ENST00000540413.1,ENST00000263431.3	chr19	54407888:54407996:54409570:54409711:54409960:54410145,	54409571	54409711	54409616	54409616	Frame_Shift_Del	G	-	p.G604fs
LIHC	TCGA-G3-A3CJ-01	CNOT3	ENST00000482247.1,ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54650336:54650393:54651882:54652270:54652354:54652432,	54651883	54652270	54651966	54651966	Frame_Shift_Del	C	-	p.G326fs
LIHC	TCGA-G3-A3CJ-01	CNOT3	ENST00000482247.1,ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54650336:54650393:54651882:54652270:54652354:54652432,	54651883	54652270	54652033	54652033	Frame_Shift_Del	C	-	p.P350fs
LIHC	TCGA-G3-A3CJ-01	CNOT3	ENST00000482247.1,ENST00000440571.1,ENST00000406403.1,ENST00000447684.1,ENST00000358389.3,ENST00000221232.5	chr19	54650336:54650393:54651882:54652270:54652354:54652432,	54651883	54652270	54652243	54652243	Frame_Shift_Del	G	-	p.G419fs
LIHC	TCGA-G3-A3CJ-01	CNOT3	ENST00000447684.1,ENST00000358389.3	chr19	54656603:54656736:54656917:54657130:54657233:54657242,	54656918	54657130	54657101	54657101	Frame_Shift_Del	G	-	p.G560fs
LIHC	TCGA-G3-A3CJ-01	LILRB3	ENST00000407860.2	chr19	54722997:54723114:54723737:54723788:54724024:54724075,	54723738	54723788	54723746	54723746	Frame_Shift_Del	G	-	p.P433fs
LIHC	TCGA-G3-A3CJ-01	LILRB1	ENST00000396331.1,ENST00000434867.2,ENST00000396327.3,ENST00000396332.4,ENST00000324602.7	chr19	55141967:55142084:55142476:55142558:55142721:55142757,	55142477	55142558	55142529	55142529	Frame_Shift_Del	C	-	p.T2fs
LIHC	TCGA-G3-A3CJ-01	LILRB1	ENST00000396331.1,ENST00000434867.2,ENST00000396327.3,ENST00000396315.1,ENST00000396332.4,ENST00000396321.2,ENST00000396317.1,ENST00000418536.2,ENST00000324602.7	chr19	55145424:55145472:55146091:55146214:55146554:55146630,	55146092	55146214	55146108	55146108	Frame_Shift_Del	G	-	p.L459fs
LIHC	TCGA-G3-A3CJ-01	LILRB1	ENST00000462628.1	chr19	55145424:55145472:55146038:55146214:55146554:55146630,	55146039	55146214	55146108	55146108	Frame_Shift_Del	G	-	p.L459fs
LIHC	TCGA-G3-A3CJ-01	FCAR	ENST00000391724.3,ENST00000391725.3,ENST00000482092.2	chr19	55396646:55396937:55399373:55399595:55401014:55401229,	55399374	55399595	55399539	55399539	Frame_Shift_Del	C	-	p.A176fs
LIHC	TCGA-G3-A3CJ-01	FCAR	ENST00000359272.4,ENST00000355524.3	chr19	55396646:55396937:55399373:55399661:55401014:55401229,	55399374	55399661	55399539	55399539	Frame_Shift_Del	C	-	p.A176fs
LIHC	TCGA-G3-A3CJ-01	FCAR	ENST00000391723.3	chr19	55396646:55396937:55399373:55399587:55401014:55401229,	55399374	55399587	55399539	55399539	Frame_Shift_Del	C	-	p.A176fs
LIHC	TCGA-G3-A3CJ-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451591	55451591	Frame_Shift_Del	T	-	p.N227fs
LIHC	TCGA-G3-A3CJ-01	PPP1R12C	ENST00000435544.2,ENST00000263433.3,ENST00000376393.2,ENST00000592993.1	chr19	55610151:55610226:55610318:55610463:55614776:55614936,	55610319	55610463	55610405	55610405	Frame_Shift_Del	G	-	p.L264fs
LIHC	TCGA-G3-A3CJ-01	TNNT1	ENST00000587465.2,ENST00000588981.1,ENST00000291901.8,ENST00000592920.1,ENST00000593046.1	chr19	55653224:55653288:55656911:55656933:55658048:55658073,55653224:55653288:55656911:55656933:55657801:55657822,	55656912	55656933	55656920	55656920	Frame_Shift_Del	G	-	p.P40fs
LIHC	TCGA-G3-A3CJ-01	SYT5	ENST00000589172.1,ENST00000537500.1,ENST00000354308.3,ENST00000592470.1	chr19	55687372:55687492:55689563:55689736:55690330:55690433,	55689564	55689736	55689645	55689645	Frame_Shift_Del	C	-	p.R58fs
LIHC	TCGA-G3-A3CJ-01	PTPRH	ENST00000376350.3,ENST00000263434.5	chr19	55697229:55697352:55697592:55697727:55697831:55697908,	55697593	55697727	55697685	55697685	Frame_Shift_Del	G	-	p.L896fs
LIHC	TCGA-G3-A3CJ-01	PTPRH	ENST00000376350.3,ENST00000588559.1,ENST00000263434.5	chr19	55710010:55710280:55711603:55711870:55713423:55713690,	55711604	55711870	55711645	55711645	Frame_Shift_Del	T	-	p.N460fs
LIHC	TCGA-G3-A3CJ-01	PTPRH	ENST00000376350.3,ENST00000588559.1	chr19	55713423:55713690:55715149:55715416:55716693:55716960,	55715150	55715416	55715182	55715182	Frame_Shift_Del	T	-	p.N285fs
LIHC	TCGA-G3-A3CJ-01	UBE2S	ENST00000264552.9	chr19	55913081:55913130:55915655:55915846:55918182:55918330,	55915656	55915846	55915694	55915694	Frame_Shift_Del	C	-	p.D102fs
LIHC	TCGA-G3-A3CJ-01	UBE2S	ENST00000589978.1	chr19	55913081:55913130:55915655:55915769:55918182:55918330,	55915656	55915769	55915694	55915694	Frame_Shift_Del	C	-	p.D102fs
LIHC	TCGA-G3-A3CJ-01	SSC5D	ENST00000389623.6,ENST00000588254.1,ENST00000587166.1	chr19	56000720:56001029:56001248:56001362:56001664:56001775,	56001249	56001362	56001287	56001287	Frame_Shift_Del	C	-	p.P134fs
LIHC	TCGA-G3-A3CJ-01	U2AF2	ENST00000590551.1,ENST00000450554.2	chr19	56180035:56180158:56180448:56180535:56180809:56181058,	56180449	56180535	56180496	56180496	Frame_Shift_Del	G	-	p.L331fs
LIHC	TCGA-G3-A3CJ-01	U2AF2	ENST00000308924.4	chr19	56180035:56180158:56180448:56180547:56180809:56181058,	56180449	56180547	56180496	56180496	Frame_Shift_Del	G	-	p.L331fs
LIHC	TCGA-G3-A3CJ-01	U2AF2	ENST00000308924.4	chr19	56180035:56180158:56180448:56180547:56180809:56181058,	56180449	56180547	56180541	56180541	Frame_Shift_Del	C	-	p.S346fs
LIHC	TCGA-G3-A3CJ-01	EPN1	ENST00000411543.2	chr19	56188411:56188584:56188915:56189100:56189892:56190062,	56188916	56189100	56189004	56189004	Frame_Shift_Del	G	-	p.G46fs
LIHC	TCGA-G3-A3CJ-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56204319:56204403:56206091:56206349:56206513:56206631,	56206092	56206349	56206189	56206189	Frame_Shift_Del	C	-	p.S540fs
LIHC	TCGA-G3-A3CJ-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56204319:56204403:56206091:56206349:56206513:56206631,	56206092	56206349	56206220	56206220	Frame_Shift_Del	C	-	p.P552fs
LIHC	TCGA-G3-A3CJ-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56204319:56204403:56206091:56206349:56206513:56206631,	56206092	56206349	56206266	56206266	Frame_Shift_Del	C	-	p.A566fs
LIHC	TCGA-G3-A3CJ-01	NLRP4	ENST00000301295.6,ENST00000587891.1	chr19	56373357:56373525:56379074:56379242:56382192:56382363,	56379075	56379242	56379194	56379194	Frame_Shift_Del	T	-	p.L770fs
LIHC	TCGA-G3-A3CJ-01	AURKC	ENST00000601799.1,ENST00000596375.1	chr19	57743909:57744048:57744827:57744976:57746251:57746426,57743985:57744053:57744827:57744976:57746251:57746426,	57744828	57744976	57744944	57744944	Frame_Shift_Del	T	-	p.D184fs
LIHC	TCGA-G3-A3CJ-01	ZNF550	ENST00000457177.1	chr19	58053207:58054611:58057824:58059361:58063994:58064090,	58057825	58059361	58058898	58058898	Frame_Shift_Del	T	-	p.K206fs
LIHC	TCGA-G3-A3CJ-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118558	58118558	Frame_Shift_Del	T	-	p.S555fs
LIHC	TCGA-G3-A3CJ-01	ZNF552	ENST00000391701.1	chr19	58319276:58320471:58324661:58324788:58326078:58326281,	58324662	58324788	58324689	58324689	Frame_Shift_Del	C	-	p.E45fs
LIHC	TCGA-G3-A3CJ-01	ZNF418	ENST00000595830.1,ENST00000425570.3,ENST00000396147.1	chr19	58434559:58434657:58436990:58439415:58441795:58441880,	58436991	58439415	58438166	58438166	Frame_Shift_Del	T	-	p.K461fs
LIHC	TCGA-G3-A3CJ-01	ZNF135	ENST00000439855.2,ENST00000313434.5,ENST00000511556.1	chr19	58570647:58570678:58572947:58573074:58574813:58574909,58571341:58571403:58572947:58573074:58574813:58574909,	58572948	58573074	58572997	58572997	Frame_Shift_Del	G	-	p.W40fs
LIHC	TCGA-G3-A3CJ-01	ZSCAN18	ENST00000600897.1	chr19	58600054:58600204:58601231:58601753:58609540:58609598,58600054:58600204:58601231:58601753:58609481:58609570,58600054:58600204:58601231:58601753:58604594:58604765,	58601232	58601753	58601641	58601641	Frame_Shift_Del	A	-	p.F54fs
LIHC	TCGA-G3-A3CJ-01	TRIM28	ENST00000593582.1,ENST00000253024.5,ENST00000594806.1	chr19	59056791:59056904:59057130:59057263:59058742:59058878,	59057131	59057263	59057156	59057156	Frame_Shift_Del	C	-	p.A160fs
LIHC	TCGA-G3-A3CJ-01	MZF1	ENST00000599369.1,ENST00000215057.2	chr19	59073299:59074871:59080643:59080764:59080882:59080953,	59080644	59080764	59080731	59080731	Frame_Shift_Del	G	-	p.H229fs
LIHC	TCGA-G3-A3CJ-01	TRIB3	ENST00000422053.2,ENST00000217233.3,ENST00000449710.1	chr20	368654:368945:371930:372223:376841:377072,	371931	372223	372006	372006	Frame_Shift_Del	C	-	p.P123fs
LIHC	TCGA-G3-A3CJ-01	RBCK1	ENST00000382214.3,ENST00000356286.5,ENST00000468272.1,ENST00000382181.2,ENST00000353660.3,ENST00000415942.1	chr20	402797:402882:407956:408136:409134:409233,	407957	408136	408134	408134	Frame_Shift_Del	A	-	p.K403fs
LIHC	TCGA-G3-A3CJ-01	CSNK2A1	ENST00000400227.3,ENST00000217244.3,ENST00000349736.5,ENST00000400217.2	chr20	472897:473008:476362:476446:478364:478424,	476363	476446	476395	476395	Frame_Shift_Del	G	-	p.H160fs
LIHC	TCGA-G3-A3CJ-01	NSFL1C	ENST00000350991.4,ENST00000381653.5,ENST00000487086.1,ENST00000216879.4,ENST00000476071.1,ENST00000353088.2,ENST00000489203.2	chr20	1438844:1438919:1444973:1445071:1447364:1447467,	1444974	1445071	1445017	1445017	Frame_Shift_Del	A	-	p.S54fs
LIHC	TCGA-G3-A3CJ-01	SIRPA	ENST00000400068.3,ENST00000358771.4,ENST00000356025.3	chr20	1902040:1902358:1902958:1903291:1905409:1905523,	1902959	1903291	1903041	1903041	Frame_Shift_Del	C	-	p.Y279fs
LIHC	TCGA-G3-A3CJ-01	IDH3B	ENST00000477689.1	chr20	2640344:2640439:2640713:2640822:2640908:2640954,	2640714	2640822	2640731	2640731	Frame_Shift_Del	C	-	p.G287fs
LIHC	TCGA-G3-A3CJ-01	IDH3B	ENST00000380851.5,ENST00000488299.1,ENST00000474315.1,ENST00000380843.4	chr20	2640344:2640439:2640675:2640822:2640908:2640954,	2640676	2640822	2640731	2640731	Frame_Shift_Del	C	-	p.G287fs
LIHC	TCGA-G3-A3CJ-01	IDH3B	ENST00000492240.1	chr20	2640170:2640231:2640344:2640822:2640908:2640954,	2640345	2640822	2640731	2640731	Frame_Shift_Del	C	-	p.G287fs
LIHC	TCGA-G3-A3CJ-01	IDH3B	ENST00000380851.5,ENST00000474315.1,ENST00000380843.4	chr20	2640908:2641011:2641102:2641236:2641342:2641475,	2641103	2641236	2641226	2641226	Frame_Shift_Del	C	-	p.G181fs
LIHC	TCGA-G3-A3CJ-01	IDH3B	ENST00000488299.1	chr20	2640908:2641011:2641102:2641475:2641554:2641615,	2641103	2641475	2641226	2641226	Frame_Shift_Del	C	-	p.G181fs
LIHC	TCGA-G3-A3CJ-01	PCED1A	ENST00000356872.3,ENST00000360652.2	chr20	2815959:2816355:2816684:2816960:2818877:2818998,	2816685	2816960	2816861	2816861	Frame_Shift_Del	G	-	p.P315fs
LIHC	TCGA-G3-A3CJ-01	VPS16	ENST00000453689.1,ENST00000417508.1	chr20	2821408:2821473:2840364:2840453:2840699:2840797,2821408:2821473:2840364:2840453:2841094:2841239,	2840365	2840453	2840391	2840391	Frame_Shift_Del	G	-	p.W27fs
LIHC	TCGA-G3-A3CJ-01	PTPRA	ENST00000425918.2,ENST00000399903.2,ENST00000358719.4,ENST00000356147.3,ENST00000380393.3,ENST00000318266.5,ENST00000216877.6	chr20	2968983:2969120:2985701:2985792:2987989:2988066,	2985702	2985792	2985763	2985763	Frame_Shift_Del	A	-	p.E258fs
LIHC	TCGA-G3-A3CJ-01	ITPA	ENST00000609835.1	chr20	3190170:3190263:3193903:3194029:3194630:3194704,	3193904	3194029	3193978	3193978	Frame_Shift_Del	G	-	p.Q46fs
LIHC	TCGA-G3-A3CJ-01	ITPA	ENST00000380113.3,ENST00000455664.2	chr20	3193814:3193872:3193964:3194029:3194630:3194704,	3193965	3194029	3193978	3193978	Frame_Shift_Del	G	-	p.Q46fs
LIHC	TCGA-G3-A3CJ-01	ITPA	ENST00000460676.1	chr20	3193814:3193872:3193964:3194072:3194630:3194704,	3193965	3194072	3193978	3193978	Frame_Shift_Del	G	-	p.Q46fs
LIHC	TCGA-G3-A3CJ-01	SIGLEC1	ENST00000202578.4,ENST00000344754.4	chr20	3677232:3677535:3677731:3677989:3678444:3678780,	3677732	3677989	3677855	3677855	Frame_Shift_Del	G	-	p.Q753fs
LIHC	TCGA-G3-A3CJ-01	MAVS	ENST00000416600.2	chr20	3838281:3838456:3841978:3842151:3842900:3843060,3835271:3835388:3841978:3842151:3842900:3843060,	3841979	3842151	3842041	3842041	Frame_Shift_Del	C	-	p.P120fs
LIHC	TCGA-G3-A3CJ-01	PANK2	ENST00000464452.1,ENST00000495692.1,ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3891223:3891477:3893104:3893281:3897573:3897697,	3893105	3893281	3893140	3893140	Frame_Shift_Del	T	-	p.L134fs
LIHC	TCGA-G3-A3CJ-01	PANK2	ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3897573:3897697:3899317:3899443:3903890:3904349,	3899318	3899443	3899427	3899427	Frame_Shift_Del	T	-	p.L258fs
LIHC	TCGA-G3-A3CJ-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163028	4163028	Frame_Shift_Del	G	-	p.R301fs
LIHC	TCGA-G3-A3CJ-01	SLC23A2	ENST00000423430.1,ENST00000338244.1,ENST00000379333.1,ENST00000424750.2	chr20	4840012:4840030:4842593:4842731:4843423:4843553,	4842594	4842731	4842683	4842683	Frame_Shift_Del	T	-	p.N512fs
LIHC	TCGA-G3-A3CJ-01	SLC23A2	ENST00000468355.1,ENST00000338244.1,ENST00000379333.1	chr20	4865398:4865469:4866466:4866555:4880200:4880293,	4866467	4866555	4866480	4866480	Frame_Shift_Del	T	-	p.K186fs
LIHC	TCGA-G3-A3CJ-01	GPCPD1	ENST00000473797.1,ENST00000379019.4,ENST00000481038.1	chr20	5548166:5548206:5550792:5550885:5554560:5554615,	5550793	5550885	5550852	5550852	Frame_Shift_Del	A	-	p.S364fs
LIHC	TCGA-G3-A3CJ-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904700	5904700	Frame_Shift_Del	A	-	p.E637fs
LIHC	TCGA-G3-A3CJ-01	MCM8	ENST00000265187.4,ENST00000378896.3	chr20	5952652:5952683:5953701:5953842:5958521:5958663,	5953702	5953842	5953824	5953824	Frame_Shift_Del	A	-	p.G459fs
LIHC	TCGA-G3-A3CJ-01	CRLS1	ENST00000452938.1	chr20	5986795:5987198:5990420:5990558:5996006:5996136,	5990421	5990558	5990530	5990530	Frame_Shift_Del	T	-	p.V139fs
LIHC	TCGA-G3-A3CJ-01	CRLS1	ENST00000378868.4,ENST00000378863.4	chr20	5996006:5996136:6011930:6012016:6012657:6012726,	6011931	6012016	6012008	6012008	Frame_Shift_Del	C	-	p.P218fs
LIHC	TCGA-G3-A3CJ-01	FERMT1	ENST00000217289.4,ENST00000478194.1,ENST00000536936.1	chr20	6064686:6064811:6065712:6065934:6068423:6068530,	6065713	6065934	6065729	6065729	Frame_Shift_Del	C	-	p.R526fs
LIHC	TCGA-G3-A3CJ-01	FERMT1	ENST00000217289.4	chr20	6088178:6088281:6090944:6091158:6093123:6093270,	6090945	6091158	6091125	6091125	Frame_Shift_Del	G	-	p.P189fs
LIHC	TCGA-G3-A3CJ-01	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438083	9438083	Frame_Shift_Del	A	-	p.K996fs
LIHC	TCGA-G3-A3CJ-01	LAMP5	ENST00000246070.2	chr20	9496099:9496272:9496646:9496778:9496902:9497008,	9496647	9496778	9496681	9496681	Frame_Shift_Del	G	-	p.R91fs
LIHC	TCGA-G3-A3CJ-01	SLX4IP	ENST00000334534.5	chr20	10536878:10536968:10541347:10541468:10579322:10579400,	10541348	10541468	10541464	10541464	Frame_Shift_Del	A	-	p.L78fs
LIHC	TCGA-G3-A3CJ-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10625004:10625032:10625510:10625627:10625790:10625904,	10625511	10625627	10625585	10625585	Frame_Shift_Del	C	-	p.G757fs
LIHC	TCGA-G3-A3CJ-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581420	17581420	Frame_Shift_Del	T	-	p.I14fs
LIHC	TCGA-G3-A3CJ-01	DSTN	ENST00000474024.1,ENST00000246069.7	chr20	17581501:17581690:17585199:17585276:17587681:17587867,	17585200	17585276	17585222	17585222	Frame_Shift_Del	A	-	p.K112fs
LIHC	TCGA-G3-A3CJ-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639251	17639251	Frame_Shift_Del	T	-	p.K634fs
LIHC	TCGA-G3-A3CJ-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639417	17639417	Frame_Shift_Del	T	-	p.K579fs
LIHC	TCGA-G3-A3CJ-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640180	17640180	Frame_Shift_Del	C	-	p.A325fs
LIHC	TCGA-G3-A3CJ-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640270	17640270	Frame_Shift_Del	C	-	p.A295fs
LIHC	TCGA-G3-A3CJ-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640476	17640476	Frame_Shift_Del	G	-	p.P226fs
LIHC	TCGA-G3-A3CJ-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640808	17640808	Frame_Shift_Del	G	-	p.P115fs
LIHC	TCGA-G3-A3CJ-01	SNX5	ENST00000476648.1,ENST00000377768.3,ENST00000377759.4,ENST00000463050.1,ENST00000483485.1,ENST00000490175.1	chr20	17928129:17928289:17929533:17929620:17929707:17929747,	17929534	17929620	17929610	17929610	Frame_Shift_Del	C	-	p.G281fs
LIHC	TCGA-G3-A3CJ-01	ZNF133	ENST00000535822.1	chr20	18269177:18269248:18286962:18287037:18295712:18295750,	18286963	18287037	18286972	18286972	Frame_Shift_Del	C	-	p.T51fs
LIHC	TCGA-G3-A3CJ-01	SEC23B	ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000450074.1,ENST00000262544.2	chr20	18496293:18496380:18505076:18505313:18505578:18505664,	18505077	18505313	18505090	18505090	Frame_Shift_Del	C	-	p.S127fs
LIHC	TCGA-G3-A3CJ-01	SEC23B	ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000262544.2	chr20	18507016:18507175:18508139:18508255:18511323:18511447,	18508140	18508255	18508244	18508244	Frame_Shift_Del	A	-	p.A366fs
LIHC	TCGA-G3-A3CJ-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19955327	19955327	Frame_Shift_Del	C	-	p.P270fs
LIHC	TCGA-G3-A3CJ-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956370	19956370	Frame_Shift_Del	T	-	p.Y616fs
LIHC	TCGA-G3-A3CJ-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956394	19956394	Frame_Shift_Del	C	-	p.D624fs
LIHC	TCGA-G3-A3CJ-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345195	23345195	Frame_Shift_Del	T	-	p.F60fs
LIHC	TCGA-G3-A3CJ-01	ACSS1	ENST00000542618.1,ENST00000432802.2,ENST00000537502.1,ENST00000323482.4	chr20	24995773:24995866:25000645:25000783:25002024:25002154,	25000646	25000783	25000772	25000772	Frame_Shift_Del	C	-	p.E291fs
LIHC	TCGA-G3-A3CJ-01	ENTPD6	ENST00000433259.2,ENST00000447877.1,ENST00000471478.1	chr20	25201867:25201969:25203473:25203614:25204736:25204793,25199185:25199250:25203473:25203614:25204736:25204793,	25203474	25203614	25203522	25203522	Frame_Shift_Del	A	-	p.Q364fs
LIHC	TCGA-G3-A3CJ-01	PYGB	ENST00000216962.4	chr20	25264739:25264887:25269060:25269119:25271116:25271258,	25269061	25269119	25269074	25269074	Frame_Shift_Del	C	-	p.D594fs
LIHC	TCGA-G3-A3CJ-01	PYGB	ENST00000216962.4	chr20	25264739:25264887:25269060:25269119:25271116:25271258,	25269061	25269119	25269111	25269111	Frame_Shift_Del	G	-	p.G608fs
LIHC	TCGA-G3-A3CJ-01	NINL	ENST00000278886.6	chr20	25450626:25450731:25456678:25457725:25459558:25459663,	25456679	25457725	25456782	25456782	Frame_Shift_Del	T	-	p.I1049fs
LIHC	TCGA-G3-A3CJ-01	NINL	ENST00000422516.1,ENST00000278886.6	chr20	25478845:25478982:25481475:25481646:25484587:25484740,	25481476	25481646	25481511	25481511	Frame_Shift_Del	G	-	p.Q333fs
LIHC	TCGA-G3-A3CJ-01	HM13	ENST00000376127.3,ENST00000496438.1,ENST00000498035.1,ENST00000340852.5,ENST00000344042.5,ENST00000398174.3	chr20	30102457:30102537:30115286:30115385:30125981:30126031,	30115287	30115385	30115383	30115383	Frame_Shift_Del	A	-	p.K94fs
LIHC	TCGA-G3-A3CJ-01	TTLL9	ENST00000375938.4,ENST00000375922.4,ENST00000535842.1,ENST00000310998.4,ENST00000375934.4	chr20	30521602:30521661:30522494:30522691:30525198:30525312,	30522495	30522691	30522597	30522597	Frame_Shift_Del	A	-	p.K304fs
LIHC	TCGA-G3-A3CJ-01	CCM2L	ENST00000262659.8	chr20	30598252:30598287:30602706:30602874:30605602:30605686,	30602707	30602874	30602717	30602717	Frame_Shift_Del	C	-	p.S14fs
LIHC	TCGA-G3-A3CJ-01	TM9SF4	ENST00000398022.2,ENST00000217315.5	chr20	30729343:30729468:30729568:30729698:30730784:30730880,	30729569	30729698	30729696	30729696	Frame_Shift_Del	A	-	p.K159fs
LIHC	TCGA-G3-A3CJ-01	TM9SF4	ENST00000398022.2,ENST00000217315.5	chr20	30738602:30738678:30742905:30742989:30745596:30745751,	30742906	30742989	30742943	30742943	Frame_Shift_Del	G	-	p.C411fs
LIHC	TCGA-G3-A3CJ-01	ASXL1	ENST00000542461.1	chr20	30946613:30946635:30954186:30954269:30956817:30956926,	30954187	30954269	30954258	30954258	Frame_Shift_Del	A	-	p.L43fs
LIHC	TCGA-G3-A3CJ-01	COMMD7	ENST00000278980.6,ENST00000446419.2,ENST00000610160.1	chr20	31291824:31291873:31292241:31292291:31292615:31292706,	31292242	31292291	31292246	31292246	Frame_Shift_Del	A	-	p.L157fs
LIHC	TCGA-G3-A3CJ-01	BPIFA1	ENST00000375422.2,ENST00000354297.4,ENST00000375413.4	chr20	31827608:31827716:31828038:31828191:31829190:31829275,	31828039	31828191	31828049	31828049	Frame_Shift_Del	G	-	p.G147fs
LIHC	TCGA-G3-A3CJ-01	CDK5RAP1	ENST00000471264.1	chr20	31967318:31967497:31973455:31973576:31975128:31975310,31967318:31967497:31973455:31973576:31979947:31980048,	31973456	31973576	31973534	31973534	Frame_Shift_Del	A	-	p.I266fs
LIHC	TCGA-G3-A3CJ-01	CBFA2T2	ENST00000491618.1,ENST00000492345.1,ENST00000346541.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32212569:32212823:32216155:32216241:32217524:32217720,	32216156	32216241	32216227	32216227	Frame_Shift_Del	A	-	p.K349fs
LIHC	TCGA-G3-A3CJ-01	CBFA2T2	ENST00000491618.1,ENST00000492345.1,ENST00000346541.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32216155:32216241:32217524:32217720:32224445:32224468,	32217525	32217720	32217610	32217610	Frame_Shift_Del	A	-	p.E382fs
LIHC	TCGA-G3-A3CJ-01	ZNF341	ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32328707:32328818:32332908:32333105:32336728:32336878,	32332909	32333105	32333005	32333005	Frame_Shift_Del	C	-	p.A80fs
LIHC	TCGA-G3-A3CJ-01	ZNF341	ENST00000497876.1,ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32371537:32371670:32376668:32376780:32377323:32377394,	32376669	32376780	32376677	32376677	Frame_Shift_Del	C	-	p.P621fs
LIHC	TCGA-G3-A3CJ-01	RALY	ENST00000333552.5	chr20	32619327:32619410:32659871:32660011:32661624:32661672,	32659872	32660011	32659925	32659925	Frame_Shift_Del	C	-	p.D15fs
LIHC	TCGA-G3-A3CJ-01	RALY	ENST00000375114.3,ENST00000442805.1,ENST00000246194.3	chr20	32619327:32619410:32659871:32660136:32661368:32661380,	32659872	32660136	32659925	32659925	Frame_Shift_Del	C	-	p.D15fs
LIHC	TCGA-G3-A3CJ-01	RALY	ENST00000375114.3,ENST00000246194.3	chr20	32664507:32664621:32664833:32665051:32666310:32666351,	32664834	32665051	32664985	32664985	Frame_Shift_Del	G	-	p.Q254fs
LIHC	TCGA-G3-A3CJ-01	RALY	ENST00000375114.3,ENST00000246194.3	chr20	32665018:32665051:32666310:32666359:32667715:32667742,	32666311	32666359	32666341	32666341	Frame_Shift_Del	G	-	p.G287fs
LIHC	TCGA-G3-A3CJ-01	EIF2S2	ENST00000374980.2	chr20	32676103:32677711:32678322:32678408:32681480:32681537,	32678323	32678408	32678354	32678354	Frame_Shift_Del	T	-	p.K265fs
LIHC	TCGA-G3-A3CJ-01	ITCH	ENST00000374864.4,ENST00000262650.6,ENST00000486883.1	chr20	32981596:32981687:32996456:32996598:33000320:33000445,	32996457	32996598	32996550	32996550	Frame_Shift_Del	A	-	p.E55fs
LIHC	TCGA-G3-A3CJ-01	TP53INP2	ENST00000374809.2,ENST00000374810.3	chr20	33296512:33296667:33297039:33297328:33297861:33301243,	33297040	33297328	33297141	33297141	Frame_Shift_Del	C	-	p.P76fs
LIHC	TCGA-G3-A3CJ-01	TP53INP2	ENST00000374809.2,ENST00000374810.3	chr20	33296512:33296667:33297039:33297328:33297861:33301243,	33297040	33297328	33297165	33297165	Frame_Shift_Del	C	-	p.P84fs
LIHC	TCGA-G3-A3CJ-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329464	33329464	Frame_Shift_Del	G	-	p.P1532fs
LIHC	TCGA-G3-A3CJ-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329588	33329588	Frame_Shift_Del	A	-	p.L1491fs
LIHC	TCGA-G3-A3CJ-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329875	33329875	Frame_Shift_Del	C	-	p.G1395fs
LIHC	TCGA-G3-A3CJ-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33331070	33331070	Frame_Shift_Del	G	-	p.P998fs
LIHC	TCGA-G3-A3CJ-01	TRPC4AP	ENST00000252015.2,ENST00000432634.2,ENST00000451813.2	chr20	33632307:33632515:33637668:33637797:33642778:33642834,	33637669	33637797	33637775	33637775	Frame_Shift_Del	A	-	p.L184fs
LIHC	TCGA-G3-A3CJ-01	EDEM2	ENST00000541621.1,ENST00000374492.3,ENST00000374491.3,ENST00000540582.1,ENST00000542871.1	chr20	33706400:33706522:33711692:33711837:33714053:33714178,	33711693	33711837	33711763	33711763	Frame_Shift_Del	C	-	p.G307fs
LIHC	TCGA-G3-A3CJ-01	EIF6	ENST00000374436.3,ENST00000415116.1,ENST00000374450.3	chr20	33867876:33867921:33868456:33868632:33871978:33872043,	33868457	33868632	33868541	33868541	Frame_Shift_Del	C	-	p.R96fs
LIHC	TCGA-G3-A3CJ-01	NFS1	ENST00000374092.4,ENST00000541387.1,ENST00000374085.1,ENST00000397425.1,ENST00000489163.1,ENST00000540053.1	chr20	34262433:34262539:34262966:34263124:34268658:34268793,	34262967	34263124	34263046	34263046	Frame_Shift_Del	C	-	p.G290fs
LIHC	TCGA-G3-A3CJ-01	NFS1	ENST00000374092.4,ENST00000541387.1,ENST00000413203.1,ENST00000374085.1,ENST00000419569.1,ENST00000397425.1,ENST00000440385.1,ENST00000306750.3,ENST00000540053.1,ENST00000421540.1,ENST00000456462.1	chr20	34284298:34284382:34285605:34285722:34286402:34286512,	34285606	34285722	34285707	34285707	Frame_Shift_Del	C	-	p.D75fs
LIHC	TCGA-G3-A3CJ-01	PHF20	ENST00000374000.4,ENST00000339089.6,ENST00000486408.1,ENST00000374012.3	chr20	34435271:34435356:34450934:34451322:34457359:34457473,34446223:34446303:34450934:34451322:34457359:34457473,	34450935	34451322	34451010	34451010	Frame_Shift_Del	T	-	p.F166fs
LIHC	TCGA-G3-A3CJ-01	PHF20	ENST00000374000.4,ENST00000481202.1,ENST00000439301.1,ENST00000339089.6,ENST00000374012.3	chr20	34459571:34459751:34487291:34487570:34501170:34501238,	34487292	34487570	34487363	34487363	Frame_Shift_Del	T	-	p.F452fs
LIHC	TCGA-G3-A3CJ-01	PHF20	ENST00000439301.1,ENST00000374012.3	chr20	34501170:34501269:34501954:34502119:34505405:34505581,	34501955	34502119	34501988	34501988	Frame_Shift_Del	C	-	p.S565fs
LIHC	TCGA-G3-A3CJ-01	DLGAP4	ENST00000373913.3,ENST00000373907.2,ENST00000401952.2	chr20	34995551:34995678:35060048:35061119:35064511:35064753,	35060049	35061119	35060184	35060184	Frame_Shift_Del	C	-	p.P22fs
LIHC	TCGA-G3-A3CJ-01	NDRG3	ENST00000349004.1,ENST00000373803.2,ENST00000359675.2,ENST00000540765.1,ENST00000422536.1,ENST00000373773.3	chr20	35309218:35309305:35310920:35310981:35312815:35312878,	35310921	35310981	35310924	35310924	Frame_Shift_Del	A	-	p.F147fs
LIHC	TCGA-G3-A3CJ-01	SOGA1	ENST00000357779.3,ENST00000456801.2,ENST00000237536.4,ENST00000279034.6,ENST00000465671.1	chr20	35425904:35425976:35431258:35431510:35433137:35433305,	35431259	35431510	35431314	35431314	Frame_Shift_Del	C	-	p.G1095fs
LIHC	TCGA-G3-A3CJ-01	TLDC2	ENST00000217320.3	chr20	35515857:35515931:35517653:35517806:35521264:35522037,	35517654	35517806	35517694	35517694	Frame_Shift_Del	G	-	p.G186fs
LIHC	TCGA-G3-A3CJ-01	SAMHD1	ENST00000262878.4,ENST00000373694.5	chr20	35545351:35545452:35547766:35547922:35555584:35555655,	35547767	35547922	35547783	35547783	Frame_Shift_Del	G	-	p.P279fs
LIHC	TCGA-G3-A3CJ-01	MROH8	ENST00000217333.8,ENST00000417458.1,ENST00000441008.2,ENST00000343811.4,ENST00000400441.3	chr20	35748100:35748241:35748906:35749021:35749301:35749439,	35748907	35749021	35748913	35748913	Frame_Shift_Del	A	-	p.F741fs
LIHC	TCGA-G3-A3CJ-01	RPN2	ENST00000237530.6,ENST00000373622.5	chr20	35858393:35858462:35862422:35862498:35864982:35865112,35860698:35860794:35862422:35862498:35864982:35865112,	35862423	35862498	35862480	35862480	Frame_Shift_Del	T	-	p.F579fs
LIHC	TCGA-G3-A3CJ-01	MANBAL	ENST00000397151.1	chr20	35927165:35927282:35929573:35929816:35944710:35945042,	35929574	35929816	35929806	35929806	Frame_Shift_Del	C	-	p.S47fs
LIHC	TCGA-G3-A3CJ-01	MANBAL	ENST00000397152.3,ENST00000373605.3,ENST00000397156.3	chr20	35927165:35927282:35929610:35929816:35944710:35945042,	35929611	35929816	35929806	35929806	Frame_Shift_Del	C	-	p.S47fs
LIHC	TCGA-G3-A3CJ-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640518	36640518	Frame_Shift_Del	T	-	p.Q567fs
LIHC	TCGA-G3-A3CJ-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676769	36676769	Frame_Shift_Del	A	-	p.K102fs
LIHC	TCGA-G3-A3CJ-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676874	36676874	Frame_Shift_Del	C	-	p.P137fs
LIHC	TCGA-G3-A3CJ-01	KIAA1755	ENST00000279024.4,ENST00000484362.1	chr20	36840877:36842145:36845654:36845876:36846645:36846768,	36845655	36845876	36845723	36845723	Frame_Shift_Del	A	-	p.Y945fs
LIHC	TCGA-G3-A3CJ-01	KIAA1755	ENST00000279024.4	chr20	36851939:36852038:36854066:36854183:36855555:36855621,	36854067	36854183	36854106	36854106	Frame_Shift_Del	G	-	p.P710fs
LIHC	TCGA-G3-A3CJ-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3,ENST00000461423.1	chr20	37146426:37146643:37150139:37150341:37153420:37153480,	37150140	37150341	37150220	37150220	Frame_Shift_Del	T	-	p.F500fs
LIHC	TCGA-G3-A3CJ-01	RALGAPB	ENST00000397042.3	chr20	37161372:37161502:37163728:37163850:37168418:37168601,	37163729	37163850	37163786	37163786	Frame_Shift_Del	C	-	p.S772fs
LIHC	TCGA-G3-A3CJ-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000461423.1	chr20	37161372:37161502:37163716:37163850:37168418:37168601,	37163717	37163850	37163786	37163786	Frame_Shift_Del	C	-	p.S772fs
LIHC	TCGA-G3-A3CJ-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397042.3	chr20	37186937:37187096:37191174:37191340:37193998:37194121,	37191175	37191340	37191226	37191226	Frame_Shift_Del	T	-	p.F1195fs
LIHC	TCGA-G3-A3CJ-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000477870.1,ENST00000483175.1,ENST00000373272.2	chr20	39797718:39797815:39798096:39798166:39798751:39798909,	39798097	39798166	39798134	39798134	Frame_Shift_Del	G	-	p.R873fs
LIHC	TCGA-G3-A3CJ-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832650	39832650	Frame_Shift_Del	G	-	p.L303fs
LIHC	TCGA-G3-A3CJ-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832650	39832650	Frame_Shift_Del	G	-	p.L303fs
LIHC	TCGA-G3-A3CJ-01	LPIN3	ENST00000373257.3	chr20	39980699:39980860:39981245:39981339:39981437:39981507,	39981246	39981339	39981313	39981313	Frame_Shift_Del	A	-	p.P477fs
LIHC	TCGA-G3-A3CJ-01	MYBL2	ENST00000396863.4,ENST00000217026.4	chr20	42315491:42315712:42320796:42320959:42328396:42328605,	42320797	42320959	42320837	42320837	Frame_Shift_Del	A	-	p.K181fs
LIHC	TCGA-G3-A3CJ-01	MYBL2	ENST00000396863.4,ENST00000217026.4	chr20	42341641:42341746:42343773:42343923:42344598:42344728,	42343774	42343923	42343919	42343919	Frame_Shift_Del	C	-	p.A657fs
LIHC	TCGA-G3-A3CJ-01	TOX2	ENST00000341197.4,ENST00000435864.2,ENST00000423191.2,ENST00000372999.1	chr20	42682990:42683166:42694351:42694747:42695369:42695497,42693416:42693497:42694351:42694747:42695369:42695497,	42694352	42694747	42694668	42694668	Frame_Shift_Del	C	-	p.A408fs
LIHC	TCGA-G3-A3CJ-01	GDAP1L1	ENST00000342560.5,ENST00000445952.1	chr20	42885792:42885985:42887073:42887247:42891869:42891967,	42887074	42887247	42887137	42887137	Frame_Shift_Del	G	-	p.R146fs
LIHC	TCGA-G3-A3CJ-01	GDAP1L1	ENST00000342560.5,ENST00000445952.1	chr20	42885792:42885985:42887073:42887247:42891869:42891967,	42887074	42887247	42887212	42887212	Frame_Shift_Del	C	-	p.S171fs
LIHC	TCGA-G3-A3CJ-01	TTPAL	ENST00000262605.4,ENST00000372904.3	chr20	43108624:43109084:43112976:43113170:43115235:43115346,	43112977	43113170	43113147	43113147	Frame_Shift_Del	A	-	p.K207fs
LIHC	TCGA-G3-A3CJ-01	PIGT	ENST00000543458.2	chr20	44047491:44047619:44047934:44048035:44048143:44048230,44044822:44044983:44047934:44048035:44048143:44048230,44045156:44045294:44047934:44048035:44048143:44048230,	44047935	44048035	44048012	44048012	Frame_Shift_Del	A	-	p.K191fs
LIHC	TCGA-G3-A3CJ-01	PIGT	ENST00000535404.1,ENST00000279036.6,ENST00000372689.5,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44048147:44048230:44048775:44048863:44048971:44049069,	44048776	44048863	44048847	44048847	Frame_Shift_Del	G	-	p.T251fs
LIHC	TCGA-G3-A3CJ-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050084	44050084	Frame_Shift_Del	G	-	p.K365fs
LIHC	TCGA-G3-A3CJ-01	WFDC3	ENST00000372632.2	chr20	44405713:44405848:44417569:44417698:44420470:44420507,44416474:44416621:44417569:44417698:44420470:44420507,44416474:44416621:44417569:44417698:44418532:44418584,44404149:44404241:44417569:44417698:44418532:44418584,	44417570	44417698	44417575	44417575	Frame_Shift_Del	G	-	p.P69fs
LIHC	TCGA-G3-A3CJ-01	ACOT8	ENST00000487205.1	chr20	44470403:44470595:44472901:44473059:44477088:44477314,	44472902	44473059	44472965	44472965	Frame_Shift_Del	G	-	p.L195fs
LIHC	TCGA-G3-A3CJ-01	ACOT8	ENST00000217455.4,ENST00000484783.1,ENST00000487205.1,ENST00000461272.1	chr20	44472901:44473059:44477088:44477314:44485826:44485835,44472901:44473059:44477088:44477314:44483797:44483923,	44477089	44477314	44477140	44477140	Frame_Shift_Del	G	-	p.P148fs
LIHC	TCGA-G3-A3CJ-01	CTSA	ENST00000485627.1,ENST00000191018.5,ENST00000372484.3,ENST00000419493.2,ENST00000354880.5,ENST00000372459.2	chr20	44521390:44521519:44521858:44521950:44522626:44522711,	44521859	44521950	44521942	44521942	Frame_Shift_Del	G	-	p.L246fs
LIHC	TCGA-G3-A3CJ-01	PLTP	ENST00000420868.2,ENST00000372420.1,ENST00000354050.4,ENST00000542937.1,ENST00000372431.3,ENST00000477313.1	chr20	44528100:44528177:44528260:44528324:44528474:44528517,	44528261	44528324	44528271	44528271	Frame_Shift_Del	G	-	p.P444fs
LIHC	TCGA-G3-A3CJ-01	PCIF1	ENST00000372409.3	chr20	44571978:44572062:44572304:44572404:44573506:44573669,	44572305	44572404	44572313	44572313	Frame_Shift_Del	C	-	p.S305fs
LIHC	TCGA-G3-A3CJ-01	CD40	ENST00000477696.1	chr20	44747011:44747033:44750362:44750537:44750871:44750882,	44750363	44750537	44750490	44750490	Frame_Shift_Del	A	-	p.E28fs
LIHC	TCGA-G3-A3CJ-01	CD40	ENST00000372276.3,ENST00000489304.1,ENST00000466205.1	chr20	44747011:44747033:44750458:44750537:44750871:44750882,	44750459	44750537	44750490	44750490	Frame_Shift_Del	A	-	p.E28fs
LIHC	TCGA-G3-A3CJ-01	CD40	ENST00000489304.1,ENST00000372285.3	chr20	44751248:44751395:44751764:44751858:44756776:44756847,44751254:44751395:44751764:44751858:44755278:44755340,	44751765	44751858	44751837	44751837	Frame_Shift_Del	A	-	p.E159fs
LIHC	TCGA-G3-A3CJ-01	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000497062.2,ENST00000317304.6	chr20	45618639:45618758:45630066:45630112:45633580:45633718,	45630067	45630112	45630082	45630082	Frame_Shift_Del	C	-	p.A42fs
LIHC	TCGA-G3-A3CJ-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45855945:45856024:45858471:45858552:45865069:45865260,	45858472	45858552	45858497	45858497	Frame_Shift_Del	T	-	p.N951fs
LIHC	TCGA-G3-A3CJ-01	NCOA3	ENST00000372004.3,ENST00000371998.3	chr20	46256665:46256767:46262239:46262380:46262791:46262939,	46262240	46262380	46262362	46262362	Frame_Shift_Del	A	-	p.K316fs
LIHC	TCGA-G3-A3CJ-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46313257:46313325:46318869:46319039:46331262:46331414,	46318870	46319039	46318909	46318909	Frame_Shift_Del	G	-	p.P233fs
LIHC	TCGA-G3-A3CJ-01	SULF2	ENST00000361612.4,ENST00000463221.2,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46318869:46319039:46331262:46331414:46365446:46365686,	46331263	46331414	46331333	46331333	Frame_Shift_Del	T	-	p.N166fs
LIHC	TCGA-G3-A3CJ-01	PREX1	ENST00000396220.1,ENST00000371941.3	chr20	47317290:47317424:47324797:47324959:47342826:47342928,	47324798	47324959	47324881	47324881	Frame_Shift_Del	A	-	p.C234fs
LIHC	TCGA-G3-A3CJ-01	PREX1	ENST00000396220.1,ENST00000371941.3	chr20	47342826:47342928:47351082:47351187:47361561:47361684,	47351083	47351187	47351101	47351101	Frame_Shift_Del	G	-	p.T167fs
LIHC	TCGA-G3-A3CJ-01	PREX1	ENST00000396220.1,ENST00000371941.3	chr20	47342826:47342928:47351082:47351187:47361561:47361684,	47351083	47351187	47351136	47351136	Frame_Shift_Del	G	-	p.L156fs
LIHC	TCGA-G3-A3CJ-01	ARFGEF2	ENST00000371917.4	chr20	47569241:47569421:47570092:47570327:47580366:47580435,	47570093	47570327	47570226	47570226	Frame_Shift_Del	A	-	p.E246fs
LIHC	TCGA-G3-A3CJ-01	ARFGEF2	ENST00000371917.4	chr20	47634032:47634087:47635420:47635535:47639587:47639718,	47635421	47635535	47635460	47635460	Frame_Shift_Del	A	-	p.K1517fs
LIHC	TCGA-G3-A3CJ-01	CSE1L	ENST00000542325.1,ENST00000262982.2,ENST00000396192.3	chr20	47691854:47692057:47693516:47693601:47695097:47695159,	47693517	47693601	47693585	47693585	Frame_Shift_Del	T	-	p.D468fs
LIHC	TCGA-G3-A3CJ-01	ZNFX1	ENST00000371754.4	chr20	47855479:47855837:47858346:47858460:47868063:47868159,	47858347	47858460	47858380	47858380	Frame_Shift_Del	A	-	p.F1131fs
LIHC	TCGA-G3-A3CJ-01	ZNFX1	ENST00000396105.1,ENST00000371752.1	chr20	47862436:47866248:47868063:47868159:47869256:47869367,	47868064	47868159	47868128	47868128	Frame_Shift_Del	A	-	p.L1083fs
LIHC	TCGA-G3-A3CJ-01	SLC9A8	ENST00000361573.2,ENST00000541138.1,ENST00000417961.1	chr20	48456077:48456136:48461572:48461656:48466115:48466217,	48461573	48461656	48461600	48461600	Frame_Shift_Del	T	-	p.F127fs
LIHC	TCGA-G3-A3CJ-01	SLC9A8	ENST00000361573.2	chr20	48466115:48466217:48467346:48467381:48471974:48472118,	48467347	48467381	48467362	48467362	Frame_Shift_Del	A	-	p.K200fs
LIHC	TCGA-G3-A3CJ-01	SLC9A8	ENST00000417961.1	chr20	48466115:48466217:48467298:48467381:48471974:48472118,	48467299	48467381	48467362	48467362	Frame_Shift_Del	A	-	p.K200fs
LIHC	TCGA-G3-A3CJ-01	DPM1	ENST00000466152.1,ENST00000371583.5,ENST00000371588.5,ENST00000413082.1,ENST00000371582.4,ENST00000371584.4	chr20	49562383:49562460:49565165:49565199:49571722:49571822,	49565166	49565199	49565177	49565177	Frame_Shift_Del	T	-	p.K95fs
LIHC	TCGA-G3-A3CJ-01	NFATC2	ENST00000609943.1,ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000396009.3,ENST00000610033.1	chr20	50071084:50071225:50090516:50090689:50091994:50092197,	50090517	50090689	50090635	50090635	Frame_Shift_Del	T	-	p.K530fs
LIHC	TCGA-G3-A3CJ-01	ZFP64	ENST00000371518.2	chr20	50668201:50668671:50704930:50705182:50713911:50713974,	50704931	50705182	50705149	50705149	Frame_Shift_Del	T	-	p.K337fs
LIHC	TCGA-G3-A3CJ-01	BCAS1	ENST00000371440.3,ENST00000448484.1,ENST00000434986.2	chr20	52601825:52602038:52609050:52609185:52611550:52611595,	52609051	52609185	52609170	52609170	Frame_Shift_Del	T	-	p.S315fs
LIHC	TCGA-G3-A3CJ-01	DOK5	ENST00000395939.1,ENST00000262593.5	chr20	53208154:53208344:53226926:53227062:53259996:53260117,	53226927	53227062	53226965	53226965	Frame_Shift_Del	C	-	p.T213fs
LIHC	TCGA-G3-A3CJ-01	DOK5	ENST00000395939.1,ENST00000262593.5	chr20	53208154:53208344:53226926:53227062:53259996:53260117,	53226927	53227062	53226973	53226973	Frame_Shift_Del	G	-	p.G216fs
LIHC	TCGA-G3-A3CJ-01	CASS4	ENST00000371336.3,ENST00000360314.3	chr20	55025654:55025735:55026874:55028185:55033395:55033836,	55026875	55028185	55027244	55027244	Frame_Shift_Del	C	-	p.P338fs
LIHC	TCGA-G3-A3CJ-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000411894.1,ENST00000395841.2,ENST00000492498.1,ENST00000429339.1,ENST00000371242.2,ENST00000452119.1	chr20	55929087:55929184:55929767:55929872:55931501:55931568,	55929768	55929872	55929821	55929821	Frame_Shift_Del	C	-	p.S48fs
LIHC	TCGA-G3-A3CJ-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000395841.2,ENST00000371242.2	chr20	55943760:55943868:55948530:55948637:55948718:55948794,	55948531	55948637	55948578	55948578	Frame_Shift_Del	T	-	p.G230fs
LIHC	TCGA-G3-A3CJ-01	RBM38	ENST00000371219.2,ENST00000342690.4,ENST00000356208.5	chr20	55967709:55967833:55968334:55968389:55982598:55982769,	55968335	55968389	55968346	55968346	Frame_Shift_Del	G	-	p.G125fs
LIHC	TCGA-G3-A3CJ-01	ZBP1	ENST00000343535.4,ENST00000432548.2,ENST00000541799.1	chr20	56190567:56190636:56191299:56191524:56195274:56195534,56190567:56190636:56191299:56191524:56195317:56195450,	56191300	56191524	56191476	56191476	Frame_Shift_Del	G	-	p.P28fs
LIHC	TCGA-G3-A3CJ-01	RAB22A	ENST00000244040.3	chr20	56886105:56886178:56918773:56918855:56928328:56928400,	56918774	56918855	56918833	56918833	Frame_Shift_Del	G	-	p.W59fs
LIHC	TCGA-G3-A3CJ-01	APCDD1L	ENST00000425773.1,ENST00000439429.1	chr20	57045664:57045803:57088872:57089043:57089714:57089953,	57088873	57089043	57088912	57088912	Frame_Shift_Del	C	-	p.E15fs
LIHC	TCGA-G3-A3CJ-01	GNAS	ENST00000354359.7,ENST00000371085.3,ENST00000477931.1,ENST00000496934.1,ENST00000306090.10,ENST00000494081.1,ENST00000371102.4,ENST00000488546.1,ENST00000313949.7,ENST00000371095.3,ENST00000476196.1,ENST00000487862.1,ENST00000371100.4,ENST00000371075.3,ENST00000480975.1,ENST00000265620.7,ENST00000464624.2	chr20	57484738:57484859:57485005:57485136:57485388:57485420,	57485006	57485136	57485109	57485109	Frame_Shift_Del	T	-	p.F958fs
LIHC	TCGA-G3-A3CJ-01	NELFCD	ENST00000460601.1,ENST00000344018.3,ENST00000474543.1,ENST00000477741.1,ENST00000602795.1,ENST00000497935.1	chr20	57566091:57566130:57566366:57566501:57566935:57567075,	57566367	57566501	57566418	57566418	Frame_Shift_Del	G	-	p.G354fs
LIHC	TCGA-G3-A3CJ-01	PHACTR3	ENST00000361300.4,ENST00000359926.3,ENST00000355648.4,ENST00000371015.1,ENST00000395636.2,ENST00000541461.1,ENST00000395639.4	chr20	58318161:58318323:58322812:58322890:58330236:58330419,	58322813	58322890	58322840	58322840	Frame_Shift_Del	A	-	p.Q103fs
LIHC	TCGA-G3-A3CJ-01	SYCP2	ENST00000357552.3,ENST00000371001.2,ENST00000412613.1	chr20	58440861:58440920:58441347:58441447:58441549:58441644,	58441348	58441447	58441393	58441393	Frame_Shift_Del	A	-	p.F1425fs
LIHC	TCGA-G3-A3CJ-01	SYCP2	ENST00000412613.1	chr20	58441549:58441644:58442765:58442902:58443889:58443935,	58442766	58442902	58442796	58442796	Frame_Shift_Del	C	-	p.R1365fs
LIHC	TCGA-G3-A3CJ-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467102	58467102	Frame_Shift_Del	T	-	p.K769fs
LIHC	TCGA-G3-A3CJ-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000461538.1,ENST00000371001.2	chr20	58476716:58476865:58482418:58482479:58486804:58486900,	58482419	58482479	58482451	58482451	Frame_Shift_Del	G	-	p.P334fs
LIHC	TCGA-G3-A3CJ-01	SYCP2	ENST00000425931.1	chr20	58495413:58495542:58496364:58496505:58497444:58497473,	58496365	58496505	58496437	58496437	Frame_Shift_Del	A	-	p.I32fs
LIHC	TCGA-G3-A3CJ-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58495413:58495542:58496364:58496508:58497444:58497473,	58496365	58496508	58496437	58496437	Frame_Shift_Del	A	-	p.I32fs
LIHC	TCGA-G3-A3CJ-01	TAF4	ENST00000252996.4,ENST00000436129.2	chr20	60574038:60574164:60575179:60575310:60575607:60575777,	60575180	60575310	60575218	60575218	Frame_Shift_Del	T	-	p.I917fs
LIHC	TCGA-G3-A3CJ-01	SS18L1	ENST00000370848.4,ENST00000421564.1,ENST00000331758.3	chr20	60734932:60735017:60736491:60736636:60737807:60737987,	60736492	60736636	60736603	60736603	Frame_Shift_Del	C	-	p.P115fs
LIHC	TCGA-G3-A3CJ-01	LAMA5	ENST00000252999.3	chr20	60889610:60889781:60889854:60890003:60890083:60890263,	60889855	60890003	60889866	60889866	Frame_Shift_Del	C	-	p.A2730fs
LIHC	TCGA-G3-A3CJ-01	LAMA5	ENST00000252999.3	chr20	60899496:60899610:60900371:60900602:60901732:60901816,	60900372	60900602	60900434	60900434	Frame_Shift_Del	C	-	p.A1823fs
LIHC	TCGA-G3-A3CJ-01	LAMA5	ENST00000252999.3	chr20	60901920:60902022:60902288:60902462:60902584:60902725,	60902289	60902462	60902294	60902294	Frame_Shift_Del	C	-	p.D1703fs
LIHC	TCGA-G3-A3CJ-01	LAMA5	ENST00000252999.3	chr20	60901920:60902022:60902288:60902462:60902584:60902725,	60902289	60902462	60902408	60902408	Frame_Shift_Del	G	-	p.H1665fs
LIHC	TCGA-G3-A3CJ-01	LAMA5	ENST00000252999.3	chr20	60903296:60903501:60903899:60904111:60904193:60904309,	60903900	60904111	60904095	60904095	Frame_Shift_Del	G	-	p.L1418fs
LIHC	TCGA-G3-A3CJ-01	SLCO4A1	ENST00000370507.1,ENST00000217159.1,ENST00000497209.1	chr20	61287710:61288602:61290028:61290119:61291763:61291885,	61290029	61290119	61290079	61290079	Frame_Shift_Del	G	-	p.G284fs
LIHC	TCGA-G3-A3CJ-01	SLCO4A1	ENST00000370507.1,ENST00000217159.1,ENST00000470412.1	chr20	61299221:61299262:61299363:61299536:61299828:61299893,	61299364	61299536	61299408	61299408	Frame_Shift_Del	T	-	p.G561fs
LIHC	TCGA-G3-A3CJ-01	COL9A3	ENST00000343916.3,ENST00000466192.1	chr20	61467272:61467305:61467538:61467685:61467829:61467884,	61467539	61467685	61467617	61467617	Frame_Shift_Del	C	-	p.P495fs
LIHC	TCGA-G3-A3CJ-01	SLC17A9	ENST00000370349.3	chr20	61584062:61584241:61584562:61584624:61588116:61588288,	61584563	61584624	61584588	61584588	Frame_Shift_Del	C	-	p.T2fs
LIHC	TCGA-G3-A3CJ-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61833852	61833852	Frame_Shift_Del	A	-	p.F480fs
LIHC	TCGA-G3-A3CJ-01	ARFGAP1	ENST00000395285.3	chr20	61917723:61917794:61918915:61920848:61921029:61921140,	61918916	61920848	61919104	61919104	Frame_Shift_Del	G	-	p.W367fs
LIHC	TCGA-G3-A3CJ-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000358894.6,ENST00000326996.6,ENST00000422202.1	chr20	61939322:61939442:61939893:61940058:61940684:61940849,	61939894	61940058	61939980	61939980	Frame_Shift_Del	A	-	p.T295fs
LIHC	TCGA-G3-A3CJ-01	COL20A1	ENST00000435874.1,ENST00000358894.6,ENST00000326996.6,ENST00000422202.1	chr20	61940684:61940849:61941109:61941267:61941732:61941862,	61941110	61941267	61941213	61941213	Frame_Shift_Del	C	-	p.H410fs
LIHC	TCGA-G3-A3CJ-01	COL20A1	ENST00000479501.1	chr20	61940684:61940849:61941106:61941267:61941732:61941862,	61941107	61941267	61941213	61941213	Frame_Shift_Del	C	-	p.H410fs
LIHC	TCGA-G3-A3CJ-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000471582.1,ENST00000422202.1	chr20	61959430:61959497:61959682:61959850:61960936:61961013,	61959683	61959850	61959774	61959774	Frame_Shift_Del	G	-	p.L1248fs
LIHC	TCGA-G3-A3CJ-01	PPDPF	ENST00000370177.1	chr20	62152129:62152247:62152636:62152716:62152864:62152882,	62152637	62152716	62152673	62152673	Frame_Shift_Del	C	-	p.I4fs
LIHC	TCGA-G3-A3CJ-01	HELZ2	ENST00000467148.1,ENST00000427522.2	chr20	62192702:62192819:62192953:62193098:62193175:62193337,	62192954	62193098	62192979	62192979	Frame_Shift_Del	C	-	p.E2271fs
LIHC	TCGA-G3-A3CJ-01	TPD52L2	ENST00000351424.4,ENST00000217121.5,ENST00000352482.4,ENST00000346249.4,ENST00000348257.5,ENST00000358548.4	chr20	62496646:62496737:62500648:62500794:62505020:62505169,	62500649	62500794	62500672	62500672	Frame_Shift_Del	A	-	p.K15fs
LIHC	TCGA-G3-A3CJ-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62594694:62594793:62594970:62595063:62595141:62595266,	62594971	62595063	62595013	62595013	Frame_Shift_Del	T	-	p.K552fs
LIHC	TCGA-G3-A3CJ-01	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62595423:62595570:62595672:62595744:62595842:62596069,	62595673	62595744	62595720	62595720	Frame_Shift_Del	T	-	p.K429fs
LIHC	TCGA-G3-A3CJ-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62838946:62839840:62842558:62842693:62843400:62843491,	62842559	62842693	62842683	62842683	Frame_Shift_Del	C	-	p.I472fs
LIHC	TCGA-G3-A3CJ-01	PCMTD2	ENST00000308824.6	chr20	62896610:62896782:62899239:62899363:62904573:62904898,	62899240	62899363	62899274	62899274	Frame_Shift_Del	G	-	p.W206fs
LIHC	TCGA-G3-A3CJ-01	CXADR	ENST00000400165.1	chr21	18919344:18919511:18924066:18924271:18931293:18931449,18919344:18919511:18924066:18924271:18937745:18937805,	18924067	18924271	18924223	18924223	Frame_Shift_Del	A	-	p.K124fs
LIHC	TCGA-G3-A3CJ-01	BTG3	ENST00000348354.6	chr21	18977177:18977315:18981289:18981470:18985016:18985162,	18981290	18981470	18981313	18981313	Frame_Shift_Del	T	-	p.K50fs
LIHC	TCGA-G3-A3CJ-01	BTG3	ENST00000348354.6	chr21	18977177:18977315:18981289:18981470:18985016:18985162,	18981290	18981470	18981340	18981340	Frame_Shift_Del	T	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	N6AMT1	ENST00000460212.1,ENST00000303775.5	chr21	30250513:30250655:30252191:30252275:30254481:30254572,	30252192	30252275	30252243	30252243	Frame_Shift_Del	T	-	p.K115fs
LIHC	TCGA-G3-A3CJ-01	USP16	ENST00000399976.2,ENST00000535828.1,ENST00000399975.3,ENST00000334352.4	chr21	30414835:30414849:30415743:30415920:30418987:30419642,	30415744	30415920	30415885	30415885	Frame_Shift_Del	A	-	p.K442fs
LIHC	TCGA-G3-A3CJ-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698518	30698518	Frame_Shift_Del	T	-	p.F125fs
LIHC	TCGA-G3-A3CJ-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698581	30698581	Frame_Shift_Del	T	-	p.F146fs
LIHC	TCGA-G3-A3CJ-01	GRIK1	ENST00000327783.4,ENST00000399907.1,ENST00000389124.2,ENST00000309434.7,ENST00000399913.1,ENST00000535441.1	chr21	30963431:30963545:30968845:30968890:30971149:30971257,	30968846	30968890	30968858	30968858	Frame_Shift_Del	T	-	p.K413fs
LIHC	TCGA-G3-A3CJ-01	TIAM1	ENST00000541036.1,ENST00000286827.3	chr21	32624057:32624505:32638325:32639299:32649047:32649083,	32638326	32639299	32638748	32638748	Frame_Shift_Del	G	-	p.L181fs
LIHC	TCGA-G3-A3CJ-01	HUNK	ENST00000270112.2	chr21	33312476:33312532:33318347:33318483:33331154:33331282,	33318348	33318483	33318460	33318460	Frame_Shift_Del	C	-	p.G241fs
LIHC	TCGA-G3-A3CJ-01	SYNJ1	ENST00000357345.3,ENST00000429236.1,ENST00000382491.3,ENST00000382499.2,ENST00000433931.2,ENST00000322229.7,ENST00000456084.1	chr21	34067535:34067592:34072147:34072415:34074270:34074357,	34072148	34072415	34072237	34072237	Frame_Shift_Del	A	-	p.F169fs
LIHC	TCGA-G3-A3CJ-01	IL10RB	ENST00000493295.1,ENST00000290200.2	chr21	34640698:34640822:34648900:34649058:34652056:34652223,	34648901	34649058	34649030	34649030	Frame_Shift_Del	A	-	p.V101fs
LIHC	TCGA-G3-A3CJ-01	IFNGR2	ENST00000405436.1,ENST00000381995.1	chr21	34783750:34783881:34787194:34787327:34793786:34793992,34783146:34783198:34787194:34787327:34793786:34793992,	34787195	34787327	34787279	34787279	Frame_Shift_Del	C	-	p.A53fs
LIHC	TCGA-G3-A3CJ-01	TMEM50B	ENST00000420455.1,ENST00000542230.2,ENST00000442441.1	chr21	34839316:34839429:34841093:34841233:34852144:34852243,	34841094	34841233	34841169	34841169	Frame_Shift_Del	A	-	p.F8fs
LIHC	TCGA-G3-A3CJ-01	GART	ENST00000381815.4,ENST00000381839.3,ENST00000361093.5,ENST00000381831.3	chr21	34897075:34897307:34900472:34900641:34900824:34900910,	34900473	34900641	34900533	34900533	Frame_Shift_Del	T	-	p.T336fs
LIHC	TCGA-G3-A3CJ-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000381839.3,ENST00000361093.5,ENST00000381831.3	chr21	34901155:34901243:34903064:34903190:34903794:34903863,	34903065	34903190	34903126	34903126	Frame_Shift_Del	A	-	p.L222fs
LIHC	TCGA-G3-A3CJ-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34927643	34927643	Frame_Shift_Del	A	-	p.K2036fs
LIHC	TCGA-G3-A3CJ-01	DONSON	ENST00000457359.1,ENST00000442660.1,ENST00000303071.5,ENST00000303113.6,ENST00000417871.1,ENST00000437395.1	chr21	34950547:34950750:34951655:34951868:34953607:34953693,	34951656	34951868	34951815	34951815	Frame_Shift_Del	A	-	p.F468fs
LIHC	TCGA-G3-A3CJ-01	DONSON	ENST00000453626.1,ENST00000303071.5,ENST00000303113.6,ENST00000432378.1,ENST00000437395.1	chr21	34954470:34954552:34955793:34955972:34956895:34957074,	34955794	34955972	34955930	34955930	Frame_Shift_Del	T	-	p.K276fs
LIHC	TCGA-G3-A3CJ-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122567	35122567	Frame_Shift_Del	C	-	p.P157fs
LIHC	TCGA-G3-A3CJ-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122567	35122567	Frame_Shift_Del	C	-	p.P157fs
LIHC	TCGA-G3-A3CJ-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000379960.5,ENST00000399326.3,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1	chr21	35172226:35172233:35183278:35183526:35186216:35186376,	35183279	35183526	35183430	35183430	Frame_Shift_Del	C	-	p.A824fs
LIHC	TCGA-G3-A3CJ-01	ITSN1	ENST00000399367.3,ENST00000381291.4,ENST00000487427.1,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35191544:35191627:35195790:35195957:35199121:35199167,	35195791	35195957	35195850	35195850	Frame_Shift_Del	G	-	p.G1026fs
LIHC	TCGA-G3-A3CJ-01	RCAN1	ENST00000481448.1	chr21	35895843:35896008:35897385:35897906:35898960:35899122,	35897386	35897906	35897486	35897486	Frame_Shift_Del	G	-	p.P41fs
LIHC	TCGA-G3-A3CJ-01	CHAF1B	ENST00000314103.5	chr21	37783760:37783902:37785181:37785613:37787592:37787687,	37785182	37785613	37785212	37785212	Frame_Shift_Del	T	-	p.S365fs
LIHC	TCGA-G3-A3CJ-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38302550:38302733:38308748:38309692:38311131:38311294,	38308749	38309692	38308782	38308782	Frame_Shift_Del	A	-	p.F321fs
LIHC	TCGA-G3-A3CJ-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38302550:38302733:38308748:38309692:38311131:38311294,	38308749	38309692	38309067	38309067	Frame_Shift_Del	G	-	p.P226fs
LIHC	TCGA-G3-A3CJ-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38302550:38302733:38308748:38309692:38311131:38311294,	38308749	38309692	38309228	38309228	Frame_Shift_Del	G	-	p.Q173fs
LIHC	TCGA-G3-A3CJ-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38302550:38302733:38308748:38309692:38311131:38311294,	38308749	38309692	38309266	38309266	Frame_Shift_Del	T	-	p.K160fs
LIHC	TCGA-G3-A3CJ-01	PIGP	ENST00000399098.1	chr21	38439561:38439680:38441851:38441924:38444733:38444837,38439561:38439680:38441851:38441924:38444444:38444610,	38441852	38441924	38441876	38441876	Frame_Shift_Del	A	-	p.L68fs
LIHC	TCGA-G3-A3CJ-01	PIGP	ENST00000399098.1	chr21	38439561:38439680:38441851:38441924:38444733:38444837,38439561:38439680:38441851:38441924:38444444:38444610,	38441852	38441924	38441882	38441882	Frame_Shift_Del	T	-	p.N66fs
LIHC	TCGA-G3-A3CJ-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000491952.1,ENST00000460328.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000399010.1,ENST00000355666.1,ENST00000399017.2	chr21	38463693:38463713:38466304:38466390:38467649:38467744,	38466305	38466390	38466361	38466361	Frame_Shift_Del	A	-	p.K220fs
LIHC	TCGA-G3-A3CJ-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38536366:38536517:38537851:38538917:38539856:38539922,	38537852	38538917	38538543	38538543	Frame_Shift_Del	C	-	p.P1343fs
LIHC	TCGA-G3-A3CJ-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555190	38555190	Frame_Shift_Del	A	-	p.K1579fs
LIHC	TCGA-G3-A3CJ-01	DYRK1A	ENST00000321219.8,ENST00000338785.3,ENST00000451934.1,ENST00000398960.2,ENST00000398956.2,ENST00000339659.4	chr21	38852939:38853128:38858768:38858916:38862476:38862763,	38858769	38858916	38858837	38858837	Frame_Shift_Del	T	-	p.A186fs
LIHC	TCGA-G3-A3CJ-01	DYRK1A	ENST00000338785.3	chr21	38877585:38877892:38878401:38878657:38884213:38884257,	38878402	38878657	38878601	38878601	Frame_Shift_Del	T	-	p.P582fs
LIHC	TCGA-G3-A3CJ-01	ERG	ENST00000442448.1,ENST00000398911.1,ENST00000398910.1,ENST00000468474.1,ENST00000417133.2,ENST00000398919.2	chr21	39795331:39795483:39817326:39817544:39870286:39870345,39795331:39795483:39817326:39817544:39947585:39947671,	39817327	39817544	39817361	39817361	Frame_Shift_Del	T	-	p.M75fs
LIHC	TCGA-G3-A3CJ-01	ERG	ENST00000442448.1,ENST00000398911.1,ENST00000398910.1,ENST00000468474.1,ENST00000417133.2,ENST00000398919.2	chr21	39795331:39795483:39817326:39817544:39870286:39870345,39795331:39795483:39817326:39817544:39947585:39947671,	39817327	39817544	39817408	39817408	Frame_Shift_Del	G	-	p.P59fs
LIHC	TCGA-G3-A3CJ-01	PSMG1	ENST00000380900.2	chr21	40549360:40549497:40550374:40550573:40552210:40552362,	40550375	40550573	40550440	40550440	Frame_Shift_Del	A	-	p.F197fs
LIHC	TCGA-G3-A3CJ-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40601237:40601362:40604102:40604210:40604298:40604424,	40604103	40604210	40604114	40604114	Frame_Shift_Del	T	-	p.M997fs
LIHC	TCGA-G3-A3CJ-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40781904:40782022:40782189:40782293:40783643:40783728,	40782190	40782293	40782217	40782217	Frame_Shift_Del	T	-	p.K379fs
LIHC	TCGA-G3-A3CJ-01	IGSF5	ENST00000380588.4	chr21	41151016:41151232:41160093:41160115:41163934:41164026,	41160094	41160115	41160096	41160096	Frame_Shift_Del	T	-	p.F313fs
LIHC	TCGA-G3-A3CJ-01	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41711045:41711342:41719596:41719872:41725391:41725581,	41719597	41719872	41719813	41719813	Frame_Shift_Del	A	-	p.S332fs
LIHC	TCGA-G3-A3CJ-01	FAM3B	ENST00000398647.3,ENST00000398646.3,ENST00000398652.3,ENST00000357985.2	chr21	42717612:42717663:42718939:42719027:42720518:42720651,	42718940	42719027	42718963	42718963	Frame_Shift_Del	T	-	p.F180fs
LIHC	TCGA-G3-A3CJ-01	MX2	ENST00000330714.3,ENST00000482953.1,ENST00000496774.1	chr21	42770911:42770946:42771122:42771264:42773896:42774055,	42771123	42771264	42771225	42771225	Frame_Shift_Del	A	-	p.K459fs
LIHC	TCGA-G3-A3CJ-01	TMPRSS3	ENST00000398405.1	chr21	43809037:43809154:43810035:43810140:43815432:43815577,	43810036	43810140	43810094	43810094	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-G3-A3CJ-01	TMPRSS3	ENST00000433957.2,ENST00000398397.3,ENST00000380399.1,ENST00000291532.3	chr21	43809037:43809154:43810035:43810146:43815432:43815577,	43810036	43810146	43810094	43810094	Frame_Shift_Del	A	-	p.F49fs
LIHC	TCGA-G3-A3CJ-01	UBASH3A	ENST00000291535.6,ENST00000473381.1,ENST00000398367.1	chr21	43833518:43833632:43836550:43836720:43838509:43838718,43833132:43833331:43836550:43836720:43838509:43838718,	43836551	43836720	43836651	43836651	Frame_Shift_Del	C	-	p.I256fs
LIHC	TCGA-G3-A3CJ-01	PDE9A	ENST00000335512.4,ENST00000486902.1,ENST00000470987.1,ENST00000539837.1,ENST00000472401.1,ENST00000380328.2,ENST00000291539.6	chr21	44073922:44073993:44106301:44106372:44119077:44119121,44073922:44073993:44106301:44106372:44108026:44108104,	44106302	44106372	44106360	44106360	Frame_Shift_Del	C	-	p.T43fs
LIHC	TCGA-G3-A3CJ-01	PDE9A	ENST00000335512.4,ENST00000398227.3,ENST00000490803.1,ENST00000467403.1,ENST00000335440.6,ENST00000470987.1,ENST00000398229.3,ENST00000539837.1,ENST00000398225.3,ENST00000468805.1,ENST00000398224.3,ENST00000380328.2,ENST00000398234.3,ENST00000349112.3,ENST00000398232.3,ENST00000460905.1,ENST00000328862.6,ENST00000462571.1,ENST00000398236.3,ENST00000291539.6,ENST00000497805.1	chr21	44163885:44163970:44171225:44171307:44174099:44174174,	44171226	44171307	44171230	44171230	Frame_Shift_Del	A	-	p.N220fs
LIHC	TCGA-G3-A3CJ-01	PDXK	ENST00000470029.1,ENST00000468090.1,ENST00000291565.4,ENST00000398085.3	chr21	45139103:45139262:45153949:45154004:45161547:45161652,	45153950	45154004	45153959	45153959	Frame_Shift_Del	T	-	p.F33fs
LIHC	TCGA-G3-A3CJ-01	TRAPPC10	ENST00000486746.1,ENST00000459741.1,ENST00000291574.4,ENST00000465905.1,ENST00000422875.1,ENST00000485621.1	chr21	45511803:45511930:45513943:45514114:45518237:45518305,	45513944	45514114	45514001	45514001	Frame_Shift_Del	C	-	p.P1021fs
LIHC	TCGA-G3-A3CJ-01	PWP2	ENST00000486126.1,ENST00000291576.7,ENST00000456705.1	chr21	45534505:45534649:45535144:45535280:45535571:45535625,	45535145	45535280	45535226	45535226	Frame_Shift_Del	G	-	p.L184fs
LIHC	TCGA-G3-A3CJ-01	PFKL	ENST00000466134.1,ENST00000397961.2,ENST00000460521.1,ENST00000349048.4,ENST00000495274.1,ENST00000467315.1,ENST00000403390.1,ENST00000498841.1,ENST00000474114.1	chr21	45743648:45743801:45744373:45744538:45744738:45744800,	45744374	45744538	45744457	45744457	Frame_Shift_Del	C	-	p.Y625fs
LIHC	TCGA-G3-A3CJ-01	PTTG1IP	ENST00000330938.3,ENST00000397886.3	chr21	46271321:46271542:46275124:46275171:46276107:46276191,	46275125	46275171	46275129	46275129	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-G3-A3CJ-01	ITGB2	ENST00000498666.1,ENST00000355153.4,ENST00000523323.1,ENST00000397854.3,ENST00000397850.2,ENST00000397857.1,ENST00000397852.1,ENST00000302347.5,ENST00000475170.1	chr21	46308607:46308810:46309190:46309410:46309892:46310137,	46309191	46309410	46309403	46309403	Frame_Shift_Del	C	-	p.G555fs
LIHC	TCGA-G3-A3CJ-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46595935	46595935	Frame_Shift_Del	C	-	p.P107fs
LIHC	TCGA-G3-A3CJ-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46595972	46595972	Frame_Shift_Del	T	-	p.V119fs
LIHC	TCGA-G3-A3CJ-01	ADARB1	ENST00000539173.1,ENST00000389861.3,ENST00000360697.3,ENST00000496664.1,ENST00000389863.4,ENST00000492414.1,ENST00000348831.4	chr21	46591556:46591599:46595644:46596579:46600244:46600359,	46595645	46596579	46596304	46596304	Frame_Shift_Del	C	-	p.P231fs
LIHC	TCGA-G3-A3CJ-01	POFUT2	ENST00000460932.1,ENST00000349485.5	chr21	46685314:46685550:46687504:46687628:46689753:46689934,	46687505	46687628	46687610	46687610	Frame_Shift_Del	T	-	p.K344fs
LIHC	TCGA-G3-A3CJ-01	COL6A2	ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47537787:47537850:47538527:47538590:47538943:47539033,	47538528	47538590	47538558	47538558	Frame_Shift_Del	C	-	p.P384fs
LIHC	TCGA-G3-A3CJ-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47540473:47540491:47540974:47541037:47541469:47541532,	47540975	47541037	47541031	47541031	Frame_Shift_Del	A	-	p.G484fs
LIHC	TCGA-G3-A3CJ-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47544564:47544627:47544798:47544834:47545179:47545225,	47544799	47544834	47544822	47544822	Frame_Shift_Del	C	-	p.D586fs
LIHC	TCGA-G3-A3CJ-01	C21orf58	ENST00000397679.1,ENST00000417060.1,ENST00000397680.1,ENST00000491666.1,ENST00000397682.3,ENST00000291691.7,ENST00000397683.1	chr21	47722398:47722490:47731369:47731481:47734629:47734794,	47731370	47731481	47731409	47731409	Frame_Shift_Del	G	-	p.Q228fs
LIHC	TCGA-G3-A3CJ-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47808656:47808799:47809113:47809346:47810584:47810747,	47809114	47809346	47809151	47809151	Frame_Shift_Del	C	-	p.L1215fs
LIHC	TCGA-G3-A3CJ-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47822244:47822397:47831102:47831981:47832750:47832906,	47831103	47831981	47831161	47831161	Frame_Shift_Del	A	-	p.Q1725fs
LIHC	TCGA-G3-A3CJ-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863768	47863768	Frame_Shift_Del	C	-	p.S3249fs
LIHC	TCGA-G3-A3CJ-01	IL17RA	ENST00000319363.6	chr22	17586480:17586492:17586742:17586844:17588616:17588658,	17586743	17586844	17586777	17586777	Frame_Shift_Del	G	-	p.T326fs
LIHC	TCGA-G3-A3CJ-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300311	18300311	Frame_Shift_Del	G	-	p.R1707fs
LIHC	TCGA-G3-A3CJ-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301475	18301475	Frame_Shift_Del	G	-	p.L1318fs
LIHC	TCGA-G3-A3CJ-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301788	18301788	Frame_Shift_Del	G	-	p.P1213fs
LIHC	TCGA-G3-A3CJ-01	MICAL3	ENST00000429452.1,ENST00000585038.1	chr22	18362111:18362168:18363970:18364069:18368643:18368817,	18363971	18364069	18364031	18364031	Frame_Shift_Del	T	-	p.K760fs
LIHC	TCGA-G3-A3CJ-01	PRODH	ENST00000482858.1	chr22	18909884:18909917:18910329:18910692:18912563:18912713,	18910330	18910692	18910631	18910631	Frame_Shift_Del	A	-	p.F243fs
LIHC	TCGA-G3-A3CJ-01	PRODH	ENST00000334029.2,ENST00000450579.1,ENST00000357068.6,ENST00000491604.1,ENST00000420436.1	chr22	18910392:18910446:18910627:18910692:18912563:18912713,	18910628	18910692	18910631	18910631	Frame_Shift_Del	A	-	p.F243fs
LIHC	TCGA-G3-A3CJ-01	DGCR2	ENST00000608548.1,ENST00000537045.1,ENST00000263196.7	chr22	19035952:19036156:19044498:19044675:19050714:19050790,	19044499	19044675	19044575	19044575	Frame_Shift_Del	G	-	p.P242fs
LIHC	TCGA-G3-A3CJ-01	CLTCL1	ENST00000263200.10,ENST00000505027.2,ENST00000442042.2,ENST00000536806.1,ENST00000427926.1,ENST00000353891.5	chr22	19183776:19183926:19183999:19184167:19187244:19187352,	19184000	19184167	19184131	19184131	Frame_Shift_Del	C	-	p.E1304fs
LIHC	TCGA-G3-A3CJ-01	ARVCF	ENST00000263207.3	chr22	19969513:19969614:19978107:19978335:19997977:19998031,	19978108	19978335	19978203	19978203	Frame_Shift_Del	G	-	p.L39fs
LIHC	TCGA-G3-A3CJ-01	TANGO2	ENST00000398042.2,ENST00000450664.1,ENST00000411907.1	chr22	20008661:20008769:20024282:20024377:20030877:20030966,20008624:20008657:20024282:20024377:20030877:20030966,	20024283	20024377	20024334	20024334	Frame_Shift_Del	T	-	p.F6fs
LIHC	TCGA-G3-A3CJ-01	TANGO2	ENST00000399807.3	chr22	20008661:20008769:20024282:20024617:20030877:20030966,20008624:20008657:20024282:20024617:20030877:20030966,	20024283	20024617	20024334	20024334	Frame_Shift_Del	T	-	p.F6fs
LIHC	TCGA-G3-A3CJ-01	TANGO2	ENST00000450019.1,ENST00000484373.1,ENST00000327374.4,ENST00000471707.1,ENST00000430807.1,ENST00000485715.2,ENST00000444651.1,ENST00000462579.1,ENST00000401886.1,ENST00000432883.1,ENST00000398042.2,ENST00000434168.1,ENST00000450664.1,ENST00000432198.1,ENST00000447208.2,ENST00000411907.1,ENST00000420290.2	chr22	20024282:20024377:20030877:20030966:20039987:20040107,	20030878	20030966	20030940	20030940	Frame_Shift_Del	G	-	p.W40fs
LIHC	TCGA-G3-A3CJ-01	ZDHHC8	ENST00000334554.7,ENST00000320602.7,ENST00000405930.3	chr22	20119517:20119574:20126716:20126838:20127000:20127158,	20126717	20126838	20126831	20126831	Frame_Shift_Del	C	-	p.F73fs
LIHC	TCGA-G3-A3CJ-01	MED15	ENST00000492381.1,ENST00000433831.1,ENST00000406969.1,ENST00000542773.1,ENST00000541476.1,ENST00000263205.7,ENST00000382974.2,ENST00000292733.7,ENST00000425759.2	chr22	20918930:20918975:20920753:20921104:20922807:20922918,	20920754	20921104	20920922	20920922	Frame_Shift_Del	C	-	p.P287fs
LIHC	TCGA-G3-A3CJ-01	SERPIND1	ENST00000215727.5,ENST00000406799.1	chr22	21133783:21134489:21138259:21138533:21140291:21140436,	21138260	21138533	21138420	21138420	Frame_Shift_Del	G	-	p.V350fs
LIHC	TCGA-G3-A3CJ-01	LZTR1	ENST00000479606.1,ENST00000414985.1,ENST00000215739.8,ENST00000480895.1,ENST00000443265.1,ENST00000389355.3	chr22	21342298:21342407:21343077:21343161:21343913:21343964,	21343078	21343161	21343103	21343103	Frame_Shift_Del	G	-	p.G179fs
LIHC	TCGA-G3-A3CJ-01	LZTR1	ENST00000479606.1,ENST00000215739.8,ENST00000389355.3	chr22	21346502:21346658:21347082:21347193:21347950:21348043,	21347083	21347193	21347173	21347173	Frame_Shift_Del	G	-	p.G414fs
LIHC	TCGA-G3-A3CJ-01	LZTR1	ENST00000492480.1	chr22	21346502:21346658:21347082:21347186:21347950:21348043,	21347083	21347186	21347173	21347173	Frame_Shift_Del	G	-	p.G414fs
LIHC	TCGA-G3-A3CJ-01	MAPK1	ENST00000544786.1	chr22	22142545:22142677:22142982:22143097:22153300:22153417,22127161:22127271:22142982:22143097:22153300:22153417,	22142983	22143097	22142985	22142985	Frame_Shift_Del	A	-	p.L241fs
LIHC	TCGA-G3-A3CJ-01	PPM1F	ENST00000397495.4,ENST00000263212.5	chr22	22288395:22288598:22293903:22294052:22300214:22300480,	22293904	22294052	22293918	22293918	Frame_Shift_Del	T	-	p.K114fs
LIHC	TCGA-G3-A3CJ-01	PPM1F	ENST00000397495.4,ENST00000263212.5	chr22	22288395:22288598:22293903:22294052:22300214:22300480,	22293904	22294052	22294006	22294006	Frame_Shift_Del	A	-	p.S85fs
LIHC	TCGA-G3-A3CJ-01	SMARCB1	ENST00000344921.6,ENST00000417137.1	chr22	24135787:24135875:24143130:24143322:24145481:24145609,	24143131	24143322	24143292	24143292	Frame_Shift_Del	C	-	p.T166fs
LIHC	TCGA-G3-A3CJ-01	GSTT2B	ENST00000290765.4	chr22	24299805:24300119:24300471:24300645:24300737:24300888,	24300472	24300645	24300562	24300562	Frame_Shift_Del	C	-	p.W145fs
LIHC	TCGA-G3-A3CJ-01	GSTT2B	ENST00000404172.3	chr22	24299805:24300119:24300513:24300645:24300737:24300888,	24300514	24300645	24300562	24300562	Frame_Shift_Del	C	-	p.W145fs
LIHC	TCGA-G3-A3CJ-01	GSTT2B	ENST00000290765.4	chr22	24299805:24300119:24300471:24300645:24300737:24300888,	24300472	24300645	24300570	24300570	Frame_Shift_Del	G	-	p.L143fs
LIHC	TCGA-G3-A3CJ-01	GSTT2B	ENST00000404172.3	chr22	24299805:24300119:24300513:24300645:24300737:24300888,	24300514	24300645	24300570	24300570	Frame_Shift_Del	G	-	p.L143fs
LIHC	TCGA-G3-A3CJ-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24483540:24483666:24487536:24487797:24491893:24492045,	24487537	24487797	24487542	24487542	Frame_Shift_Del	G	-	p.E1177fs
LIHC	TCGA-G3-A3CJ-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24483540:24483666:24487536:24487797:24491893:24492045,	24487537	24487797	24487767	24487767	Frame_Shift_Del	C	-	p.N1252fs
LIHC	TCGA-G3-A3CJ-01	SUSD2	ENST00000358321.3,ENST00000463101.1	chr22	24581453:24581539:24581628:24581897:24581983:24582127,	24581629	24581897	24581804	24581804	Frame_Shift_Del	T	-	p.F416fs
LIHC	TCGA-G3-A3CJ-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622165	24622165	Frame_Shift_Del	C	-	p.D370fs
LIHC	TCGA-G3-A3CJ-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622204	24622204	Frame_Shift_Del	G	-	p.L357fs
LIHC	TCGA-G3-A3CJ-01	SNRPD3	ENST00000404603.1,ENST00000439775.1,ENST00000402849.1	chr22	24951999:24952039:24953624:24953768:24963951:24964005,	24953625	24953768	24953658	24953658	Frame_Shift_Del	C	-	p.P6fs
LIHC	TCGA-G3-A3CJ-01	SGSM1	ENST00000400359.4	chr22	25264689:25264822:25270381:25270546:25272543:25272682,	25270382	25270546	25270422	25270422	Frame_Shift_Del	G	-	p.V444fs
LIHC	TCGA-G3-A3CJ-01	SEZ6L	ENST00000248933.6,ENST00000529632.2,ENST00000402979.1,ENST00000343706.4,ENST00000404234.3,ENST00000403121.1	chr22	26736401:26736598:26743684:26743879:26761337:26761532,26736401:26736598:26743684:26743879:26747017:26747209,	26743685	26743879	26743876	26743876	Frame_Shift_Del	A	-	p.K802fs
LIHC	TCGA-G3-A3CJ-01	SRRD	ENST00000477945.1,ENST00000215917.7	chr22	26884355:26884454:26886009:26886164:26886990:26887036,	26886010	26886164	26886086	26886086	Frame_Shift_Del	T	-	p.L230fs
LIHC	TCGA-G3-A3CJ-01	CHEK2	ENST00000425190.2,ENST00000439346.1,ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000402731.1,ENST00000491919.1,ENST00000464581.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000447421.1,ENST00000456369.1,ENST00000405598.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1,ENST00000433028.2	chr22	29095825:29095925:29099492:29099554:29105993:29106047,	29099493	29099554	29099532	29099532	Frame_Shift_Del	T	-	p.N69fs
LIHC	TCGA-G3-A3CJ-01	KREMEN1	ENST00000327813.5,ENST00000400338.2	chr22	29469105:29469215:29490245:29490408:29494849:29494941,	29490246	29490408	29490379	29490379	Frame_Shift_Del	G	-	p.E77fs
LIHC	TCGA-G3-A3CJ-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000331029.7,ENST00000332035.6,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29695184:29695270:29695588:29695841:29696111:29696326,29695223:29695321:29695588:29695841:29696111:29696326,	29695589	29695841	29695660	29695660	Frame_Shift_Del	C	-	p.P584fs
LIHC	TCGA-G3-A3CJ-01	ASCC2	ENST00000495967.1	chr22	30218340:30218453:30221075:30221246:30234166:30234217,	30221076	30221246	30221094	30221094	Frame_Shift_Del	G	-	p.S131fs
LIHC	TCGA-G3-A3CJ-01	ASCC2	ENST00000495967.1	chr22	30218340:30218453:30221075:30221246:30234166:30234217,	30221076	30221246	30221158	30221158	Frame_Shift_Del	G	-	p.P110fs
LIHC	TCGA-G3-A3CJ-01	ASCC2	ENST00000495967.1	chr22	30218340:30218453:30221075:30221246:30234166:30234217,	30221076	30221246	30221171	30221171	Frame_Shift_Del	C	-	p.V106fs
LIHC	TCGA-G3-A3CJ-01	SF3A1	ENST00000439242.1,ENST00000215793.8	chr22	30733014:30733169:30733678:30733886:30734777:30735023,	30733679	30733886	30733828	30733828	Frame_Shift_Del	G	-	p.P536fs
LIHC	TCGA-G3-A3CJ-01	CCDC157	ENST00000338306.3,ENST00000405659.1	chr22	30765420:30765592:30766314:30766939:30767638:30767716,	30766315	30766939	30766418	30766418	Frame_Shift_Del	C	-	p.S175fs
LIHC	TCGA-G3-A3CJ-01	SEC14L4	ENST00000321205.5,ENST00000320982.3,ENST00000255858.7,ENST00000540456.1,ENST00000392772.2,ENST00000381982.3	chr22	30888035:30888142:30888460:30888544:30890136:30890197,	30888461	30888544	30888508	30888508	Frame_Shift_Del	T	-	p.K152fs
LIHC	TCGA-G3-A3CJ-01	SEC14L4	ENST00000320982.3,ENST00000255858.7,ENST00000392772.2,ENST00000381982.3	chr22	30891240:30891429:30891569:30891629:30891914:30891958,	30891570	30891629	30891599	30891599	Frame_Shift_Del	C	-	p.D15fs
LIHC	TCGA-G3-A3CJ-01	PES1	ENST00000354694.7,ENST00000402281.1,ENST00000402284.3,ENST00000405677.1,ENST00000335214.6	chr22	30975737:30975922:30976039:30976165:30976557:30976673,	30976040	30976165	30976119	30976119	Frame_Shift_Del	C	-	p.A225fs
LIHC	TCGA-G3-A3CJ-01	INPP5J	ENST00000331075.5	chr22	31520127:31520249:31520830:31521996:31522361:31522475,31518979:31519105:31520830:31521996:31522361:31522475,	31520831	31521996	31521176	31521176	Frame_Shift_Del	C	-	p.P152fs
LIHC	TCGA-G3-A3CJ-01	PIK3IP1	ENST00000441972.1	chr22	31678925:31679274:31685484:31685685:31686950:31687070,	31685485	31685685	31685502	31685502	Frame_Shift_Del	T	-	p.K164fs
LIHC	TCGA-G3-A3CJ-01	DRG1	ENST00000433341.1,ENST00000416465.1	chr22	31806997:31807067:31816241:31816411:31819265:31819305,31806997:31807067:31816241:31816411:31817293:31817385,	31816242	31816411	31816331	31816331	Frame_Shift_Del	T	-	p.F168fs
LIHC	TCGA-G3-A3CJ-01	EIF4ENIF1	ENST00000397525.1,ENST00000397523.1,ENST00000330125.5	chr22	31858917:31859119:31859666:31859953:31864160:31864288,	31859667	31859953	31859712	31859712	Frame_Shift_Del	C	-	p.L180fs
LIHC	TCGA-G3-A3CJ-01	SFI1	ENST00000443011.1,ENST00000414585.1,ENST00000443326.1,ENST00000474741.1,ENST00000400289.1,ENST00000400288.2,ENST00000452250.1,ENST00000432498.1,ENST00000382162.3,ENST00000540643.1	chr22	32009820:32009841:32010774:32010846:32011033:32011265,	32010775	32010846	32010783	32010783	Frame_Shift_Del	C	-	p.A971fs
LIHC	TCGA-G3-A3CJ-01	PRR14L	ENST00000412743.1	chr22	32121529:32121596:32134372:32134897:32145978:32146058,32121529:32121596:32134372:32134897:32146057:32146126,	32134373	32134897	32134512	32134512	Frame_Shift_Del	T	-	p.K112fs
LIHC	TCGA-G3-A3CJ-01	HMGXB4	ENST00000444518.2,ENST00000418170.1,ENST00000216106.5	chr22	35684230:35684400:35688984:35689107:35689599:35689762,	35688985	35689107	35689093	35689093	Frame_Shift_Del	C	-	p.P583fs
LIHC	TCGA-G3-A3CJ-01	MB	ENST00000419229.1	chr22	36007016:36007153:36013209:36013312:36019237:36019401,36007016:36007153:36013209:36013312:36018524:36018571,36007016:36007153:36013209:36013312:36018012:36018143,	36013210	36013312	36013257	36013257	Frame_Shift_Del	C	-	p.G16fs
LIHC	TCGA-G3-A3CJ-01	APOL4	ENST00000397275.2	chr22	36595380:36595422:36595601:36595654:36597745:36597829,	36595602	36595654	36595620	36595620	Frame_Shift_Del	C	-	p.E25fs
LIHC	TCGA-G3-A3CJ-01	APOL1	ENST00000440669.2,ENST00000433768.1,ENST00000439680.1,ENST00000422471.1	chr22	36653364:36653453:36655714:36655902:36657641:36657679,	36655715	36655902	36655844	36655844	Frame_Shift_Del	C	-	p.T106fs
LIHC	TCGA-G3-A3CJ-01	APOL1	ENST00000431184.1	chr22	36653364:36653453:36655714:36655964:36657641:36657679,	36655715	36655964	36655844	36655844	Frame_Shift_Del	C	-	p.T106fs
LIHC	TCGA-G3-A3CJ-01	MYH9	ENST00000216181.5	chr22	36701975:36702097:36702459:36702653:36705326:36705441,	36702460	36702653	36702499	36702499	Frame_Shift_Del	G	-	p.P666fs
LIHC	TCGA-G3-A3CJ-01	FOXRED2	ENST00000216187.6,ENST00000366463.3,ENST00000397223.4,ENST00000397224.4	chr22	36889679:36889850:36892013:36892255:36894037:36894203,	36892014	36892255	36892219	36892219	Frame_Shift_Del	G	-	p.P473fs
LIHC	TCGA-G3-A3CJ-01	EIF3D	ENST00000541106.1,ENST00000405442.1,ENST00000216190.8	chr22	36912751:36912837:36913347:36913478:36914809:36914957,	36913348	36913478	36913442	36913442	Frame_Shift_Del	G	-	p.P299fs
LIHC	TCGA-G3-A3CJ-01	EIF3D	ENST00000458572.1	chr22	36912751:36912837:36913347:36913540:36914809:36914957,	36913348	36913540	36913442	36913442	Frame_Shift_Del	G	-	p.P299fs
LIHC	TCGA-G3-A3CJ-01	TST	ENST00000249042.3	chr22	37406899:37407366:37414178:37414794:37415440:37415568,	37414179	37414794	37414325	37414325	Frame_Shift_Del	G	-	p.P150fs
LIHC	TCGA-G3-A3CJ-01	TMPRSS6	ENST00000406856.1,ENST00000381792.2,ENST00000346753.3,ENST00000406725.1,ENST00000442782.2	chr22	37480334:37480444:37480766:37480879:37482322:37482459,	37480767	37480879	37480793	37480793	Frame_Shift_Del	G	-	p.Q354fs
LIHC	TCGA-G3-A3CJ-01	CYTH4	ENST00000248901.6,ENST00000462927.1	chr22	37695266:37695347:37696947:37697060:37699294:37699336,	37696948	37697060	37696964	37696964	Frame_Shift_Del	T	-	p.F151fs
LIHC	TCGA-G3-A3CJ-01	GGA1	ENST00000381756.5,ENST00000406772.1,ENST00000337437.4,ENST00000343632.4,ENST00000325180.8	chr22	38026004:38026177:38026909:38027106:38028002:38028172,	38026910	38027106	38026978	38026978	Frame_Shift_Del	C	-	p.S394fs
LIHC	TCGA-G3-A3CJ-01	GGA1	ENST00000381756.5,ENST00000406772.1,ENST00000337437.4,ENST00000460957.1,ENST00000343632.4,ENST00000325180.8	chr22	38026919:38027106:38028002:38028172:38028411:38028522,	38028003	38028172	38028134	38028134	Frame_Shift_Del	C	-	p.P481fs
LIHC	TCGA-G3-A3CJ-01	MICALL1	ENST00000454685.1	chr22	38321853:38322050:38323417:38323827:38327805:38327940,	38323418	38323827	38323697	38323697	Frame_Shift_Del	C	-	p.A582fs
LIHC	TCGA-G3-A3CJ-01	MICALL1	ENST00000215957.6	chr22	38321853:38322050:38323417:38323833:38327805:38327940,	38323418	38323833	38323697	38323697	Frame_Shift_Del	C	-	p.A582fs
LIHC	TCGA-G3-A3CJ-01	MICALL1	ENST00000215957.6,ENST00000454685.1,ENST00000402631.1	chr22	38327805:38327940:38328559:38328686:38328804:38328895,	38328560	38328686	38328637	38328637	Frame_Shift_Del	G	-	p.L698fs
LIHC	TCGA-G3-A3CJ-01	MICALL1	ENST00000215957.6,ENST00000424008.1,ENST00000402631.1	chr22	38329045:38329119:38333086:38333201:38333752:38333799,	38333087	38333201	38333100	38333100	Frame_Shift_Del	G	-	p.T774fs
LIHC	TCGA-G3-A3CJ-01	PLA2G6	ENST00000491986.1,ENST00000448094.1	chr22	38516765:38516916:38519101:38519265:38522377:38522449,38516765:38516916:38519101:38519265:38521645:38521698,	38519102	38519265	38519226	38519226	Frame_Shift_Del	T	-	p.K489fs
LIHC	TCGA-G3-A3CJ-01	PLA2G6	ENST00000332509.3	chr22	38522377:38522456:38524275:38524437:38525460:38525513,	38524276	38524437	38524299	38524299	Frame_Shift_Del	G	-	p.P443fs
LIHC	TCGA-G3-A3CJ-01	TMEM184B	ENST00000361684.4,ENST00000436674.1,ENST00000361906.3	chr22	38615330:38617717:38620791:38620986:38621430:38621600,	38620792	38620986	38620822	38620822	Frame_Shift_Del	C	-	p.V318fs
LIHC	TCGA-G3-A3CJ-01	TMEM184B	ENST00000361684.4,ENST00000436674.1,ENST00000361906.3	chr22	38615330:38617717:38620791:38620986:38621430:38621600,	38620792	38620986	38620884	38620884	Frame_Shift_Del	A	-	p.F297fs
LIHC	TCGA-G3-A3CJ-01	KDELR3	ENST00000216014.4,ENST00000471268.1,ENST00000409006.3	chr22	38870527:38870628:38875597:38875756:38877216:38877469,	38875598	38875756	38875602	38875602	Frame_Shift_Del	T	-	p.V66fs
LIHC	TCGA-G3-A3CJ-01	DDX17	ENST00000216019.7	chr22	38881882:38882445:38883883:38888120:38889714:38889776,	38883884	38888120	38888105	38888105	Frame_Shift_Del	T	-	p.K468fs
LIHC	TCGA-G3-A3CJ-01	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000396821.3,ENST00000432525.1,ENST00000381633.3	chr22	38890634:38890807:38890890:38891051:38891800:38891942,	38890891	38891051	38890927	38890927	Frame_Shift_Del	A	-	p.F335fs
LIHC	TCGA-G3-A3CJ-01	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000396821.3,ENST00000432525.1,ENST00000381633.3	chr22	38891800:38891942:38894089:38894155:38894444:38894578,	38894090	38894155	38894107	38894107	Frame_Shift_Del	T	-	p.R241fs
LIHC	TCGA-G3-A3CJ-01	CBY1	ENST00000489847.1,ENST00000216029.3,ENST00000396811.2	chr22	39066888:39066994:39067074:39067193:39069163:39069418,	39067075	39067193	39067080	39067080	Frame_Shift_Del	G	-	p.G64fs
LIHC	TCGA-G3-A3CJ-01	GTPBP1	ENST00000458073.1,ENST00000216044.5	chr22	39122310:39122445:39123217:39123353:39123987:39124166,	39123218	39123353	39123239	39123239	Frame_Shift_Del	A	-	p.K475fs
LIHC	TCGA-G3-A3CJ-01	APOBEC3B	ENST00000402182.3,ENST00000333467.3,ENST00000335760.5	chr22	39378413:39378475:39380079:39380236:39381816:39382096,	39380080	39380236	39380127	39380127	Frame_Shift_Del	A	-	p.E22fs
LIHC	TCGA-G3-A3CJ-01	CBX7	ENST00000216133.5,ENST00000401405.3,ENST00000477827.1	chr22	39537375:39537441:39545793:39545837:39548380:39548449,	39545794	39545837	39545797	39545797	Frame_Shift_Del	G	-	p.P37fs
LIHC	TCGA-G3-A3CJ-01	ATF4	ENST00000396680.1,ENST00000404241.2	chr22	39916568:39916756:39917358:39917676:39917777:39917962,	39917359	39917676	39917525	39917525	Frame_Shift_Del	G	-	p.L25fs
LIHC	TCGA-G3-A3CJ-01	ENTHD1	ENST00000325157.6	chr22	40231844:40231963:40257769:40258012:40283403:40283907,	40257770	40258012	40257837	40257837	Frame_Shift_Del	G	-	p.P175fs
LIHC	TCGA-G3-A3CJ-01	GRAP2	ENST00000544756.1,ENST00000344138.4,ENST00000407075.3	chr22	40356058:40356178:40361993:40362162:40364045:40364276,	40361994	40362162	40362078	40362078	Frame_Shift_Del	A	-	p.L125fs
LIHC	TCGA-G3-A3CJ-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662624	40662624	Frame_Shift_Del	G	-	p.W797fs
LIHC	TCGA-G3-A3CJ-01	TNRC6B	ENST00000402203.1,ENST00000335727.9,ENST00000301923.9,ENST00000446273.1,ENST00000454349.2	chr22	40704515:40704653:40706820:40706997:40708508:40708655,	40706821	40706997	40706897	40706897	Frame_Shift_Del	G	-	p.L1445fs
LIHC	TCGA-G3-A3CJ-01	SGSM3	ENST00000478085.1,ENST00000248929.9,ENST00000485962.1,ENST00000454798.2	chr22	40801652:40801848:40802081:40802227:40802441:40802666,	40802082	40802227	40802178	40802178	Frame_Shift_Del	A	-	p.E304fs
LIHC	TCGA-G3-A3CJ-01	RANGAP1	ENST00000407260.4,ENST00000455915.2,ENST00000446258.1,ENST00000356244.3,ENST00000405486.1	chr22	41652024:41652109:41652194:41652294:41652714:41652828,	41652195	41652294	41652231	41652231	Frame_Shift_Del	C	-	p.A318fs
LIHC	TCGA-G3-A3CJ-01	ZC3H7B	ENST00000352645.4,ENST00000351589.4	chr22	41735993:41736141:41737091:41737150:41738532:41738632,	41737092	41737150	41737143	41737143	Frame_Shift_Del	C	-	p.A397fs
LIHC	TCGA-G3-A3CJ-01	XRCC6	ENST00000402580.3,ENST00000405878.1,ENST00000428575.2,ENST00000360079.3,ENST00000405506.1,ENST00000359308.4	chr22	42032519:42032774:42033611:42033795:42042899:42043086,	42033612	42033795	42033647	42033647	Frame_Shift_Del	G	-	p.G210fs
LIHC	TCGA-G3-A3CJ-01	MEI1	ENST00000401548.3,ENST00000540833.1,ENST00000300398.4,ENST00000400107.1	chr22	42128476:42128607:42139083:42139198:42140976:42141068,	42139084	42139198	42139150	42139150	Frame_Shift_Del	A	-	p.L466fs
LIHC	TCGA-G3-A3CJ-01	CCDC134	ENST00000255784.5	chr22	42196682:42196770:42204878:42204997:42205882:42206004,	42204879	42204997	42204925	42204925	Frame_Shift_Del	T	-	p.F11fs
LIHC	TCGA-G3-A3CJ-01	SREBF2	ENST00000361204.4,ENST00000435061.1	chr22	42294679:42294785:42296333:42296502:42298973:42299007,	42296334	42296502	42296487	42296487	Frame_Shift_Del	C	-	p.D964fs
LIHC	TCGA-G3-A3CJ-01	CENPM	ENST00000402420.1,ENST00000402338.1,ENST00000215980.5	chr22	42335175:42335200:42339613:42339705:42341228:42341308,	42339614	42339705	42339660	42339660	Frame_Shift_Del	T	-	p.K85fs
LIHC	TCGA-G3-A3CJ-01	RRP7A	ENST00000483303.1	chr22	42912016:42912302:42914010:42914153:42915719:42915800,	42914011	42914153	42914129	42914129	Frame_Shift_Del	T	-	p.K33fs
LIHC	TCGA-G3-A3CJ-01	POLDIP3	ENST00000451060.2	chr22	42983511:42983578:42987960:42988090:42991542:42991609,42981892:42981974:42987960:42988090:42991542:42991609,	42987961	42988090	42988011	42988011	Frame_Shift_Del	T	-	p.K324fs
LIHC	TCGA-G3-A3CJ-01	ARFGAP3	ENST00000437119.2,ENST00000263245.5,ENST00000429508.2,ENST00000453516.1	chr22	43218275:43218415:43219661:43219708:43222945:43223005,	43219662	43219708	43219687	43219687	Frame_Shift_Del	T	-	p.K217fs
LIHC	TCGA-G3-A3CJ-01	ARFGAP3	ENST00000263245.5	chr22	43230247:43230331:43231367:43231499:43236949:43237022,	43231368	43231499	43231488	43231488	Frame_Shift_Del	A	-	p.F91fs
LIHC	TCGA-G3-A3CJ-01	TTLL1	ENST00000331018.7,ENST00000266254.7	chr22	43464415:43464596:43465641:43465850:43471479:43471596,	43465642	43465850	43465769	43465769	Frame_Shift_Del	A	-	p.F65fs
LIHC	TCGA-G3-A3CJ-01	TSPO	ENST00000583777.1,ENST00000396265.3	chr22	43547578:43547610:43557057:43557196:43558808:43559216,	43557058	43557196	43557121	43557121	Frame_Shift_Del	G	-	p.L82fs
LIHC	TCGA-G3-A3CJ-01	TSPO	ENST00000583777.1,ENST00000396265.3	chr22	43547578:43547610:43557057:43557196:43558808:43559216,	43557058	43557196	43557186	43557186	Frame_Shift_Del	A	-	p.Q104fs
LIHC	TCGA-G3-A3CJ-01	PNPLA5	ENST00000216177.4	chr22	44285678:44285744:44286941:44287174:44287567:44287875,	44286942	44287174	44287050	44287050	Frame_Shift_Del	G	-	p.P106fs
LIHC	TCGA-G3-A3CJ-01	NUP50	ENST00000396096.2,ENST00000347635.4,ENST00000407019.2	chr22	45567480:45567564:45574118:45574781:45577166:45577248,45571774:45571961:45574118:45574781:45577166:45577248,	45574119	45574781	45574642	45574642	Frame_Shift_Del	C	-	p.V288fs
LIHC	TCGA-G3-A3CJ-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45749857:45750012:45750838:45750995:45754576:45754675,	45750839	45750995	45750911	45750911	Frame_Shift_Del	T	-	p.T1016fs
LIHC	TCGA-G3-A3CJ-01	CDPF1	ENST00000381037.4	chr22	46640992:46641135:46642569:46642692:46643002:46643118,46640992:46641135:46642569:46642692:46643006:46643118,	46642570	46642692	46642578	46642578	Frame_Shift_Del	G	-	p.P115fs
LIHC	TCGA-G3-A3CJ-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50717283:50717440:50718058:50718205:50718433:50718500,	50718059	50718205	50718187	50718187	Frame_Shift_Del	G	-	p.L1421fs
LIHC	TCGA-G3-A3CJ-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728224	50728224	Frame_Shift_Del	G	-	p.L264fs
LIHC	TCGA-G3-A3CJ-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728252	50728252	Frame_Shift_Del	G	-	p.P254fs
LIHC	TCGA-G3-A3CJ-01	SBF1	ENST00000380817.3	chr22	50895017:50895102:50897683:50897821:50897898:50898095,50895462:50895540:50897683:50897821:50897898:50898095,	50897684	50897821	50897699	50897699	Frame_Shift_Del	G	-	p.H1271fs
LIHC	TCGA-G3-A3CJ-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51159510	51159510	Frame_Shift_Del	C	-	p.G1069fs
LIHC	TCGA-G3-A3CJ-01	RABL2B	ENST00000436958.1	chr22	51207468:51207552:51207852:51207980:51214199:51214261,	51207853	51207980	51207957	51207957	Frame_Shift_Del	T	-	p.S145fs
LIHC	TCGA-G3-A3CJ-01	RABL2B	ENST00000425098.1	chr22	51207468:51207552:51207882:51207980:51214199:51214261,	51207883	51207980	51207957	51207957	Frame_Shift_Del	T	-	p.S145fs
LIHC	TCGA-G3-A3CJ-01	ASMTL	ENST00000381317.3,ENST00000534940.1	chrX	1554586:1554651:1557989:1558037:1561078:1561210,	1557990	1558037	1558020	1558020	Frame_Shift_Del	G	-	p.P23fs
LIHC	TCGA-G3-A3CJ-01	XG	ENST00000426774.1,ENST00000419513.2,ENST00000381174.5	chrX	2726225:2726261:2729376:2729493:2732404:2732589,	2729377	2729493	2729403	2729403	Frame_Shift_Del	C	-	p.P147fs
LIHC	TCGA-G3-A3CJ-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7894100	7894100	Frame_Shift_Del	C	-	p.A22fs
LIHC	TCGA-G3-A3CJ-01	MID1	ENST00000380779.1,ENST00000380780.1,ENST00000453318.2,ENST00000413894.1,ENST00000317552.4,ENST00000380787.1,ENST00000380782.2,ENST00000380785.1	chrX	10463623:10463731:10491131:10491227:10534927:10535643,	10491132	10491227	10491166	10491166	Frame_Shift_Del	A	-	p.L241fs
LIHC	TCGA-G3-A3CJ-01	OFD1	ENST00000490265.1,ENST00000398395.3	chrX	13767545:13767652:13769367:13769487:13771486:13771560,13767545:13767652:13769367:13769487:13770822:13770949,	13769368	13769487	13769443	13769443	Frame_Shift_Del	T	-	p.S197fs
LIHC	TCGA-G3-A3CJ-01	ASB9	ENST00000473862.1,ENST00000380488.4,ENST00000477346.2,ENST00000546332.1,ENST00000380485.3	chrX	15266865:15267057:15268551:15268686:15270375:15270439,	15268552	15268686	15268590	15268590	Frame_Shift_Del	T	-	p.N177fs
LIHC	TCGA-G3-A3CJ-01	ASB9	ENST00000380483.3	chrX	15266865:15267057:15268551:15268656:15270375:15270439,	15268552	15268656	15268590	15268590	Frame_Shift_Del	T	-	p.N177fs
LIHC	TCGA-G3-A3CJ-01	ZRSR2	ENST00000307771.7	chrX	15833799:15834013:15836709:15836765:15838329:15838439,	15836710	15836765	15836738	15836738	Frame_Shift_Del	G	-	p.R267fs
LIHC	TCGA-G3-A3CJ-01	SYAP1	ENST00000380155.3	chrX	16753387:16753468:16754288:16754355:16759838:16759912,	16754289	16754355	16754319	16754319	Frame_Shift_Del	A	-	p.K110fs
LIHC	TCGA-G3-A3CJ-01	TXLNG	ENST00000398155.4,ENST00000380122.5	chrX	16850745:16850865:16852405:16852480:16855715:16855808,	16852406	16852480	16852471	16852471	Frame_Shift_Del	A	-	p.L350fs
LIHC	TCGA-G3-A3CJ-01	RBBP7	ENST00000404022.1,ENST00000380087.2	chrX	16881079:16881223:16887198:16887343:16888160:16888467,	16887199	16887343	16887258	16887258	Frame_Shift_Del	A	-	p.V34fs
LIHC	TCGA-G3-A3CJ-01	RBBP7	ENST00000468092.1	chrX	16881079:16881223:16887198:16887377:16888160:16888467,	16887199	16887377	16887258	16887258	Frame_Shift_Del	A	-	p.V34fs
LIHC	TCGA-G3-A3CJ-01	REPS2	ENST00000380064.4	chrX	17086527:17086594:17088062:17088116:17121840:17121902,	17088063	17088116	17088068	17088068	Frame_Shift_Del	A	-	p.K429fs
LIHC	TCGA-G3-A3CJ-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745183	17745183	Frame_Shift_Del	C	-	p.S965fs
LIHC	TCGA-G3-A3CJ-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745879	17745879	Frame_Shift_Del	A	-	p.E1197fs
LIHC	TCGA-G3-A3CJ-01	PHKA2	ENST00000379942.4	chrX	18959646:18959793:18961827:18961926:18963195:18963276,	18961828	18961926	18961891	18961891	Frame_Shift_Del	A	-	p.F218fs
LIHC	TCGA-G3-A3CJ-01	RPS6KA3	ENST00000379548.4,ENST00000540702.1,ENST00000544447.1,ENST00000379565.3	chrX	20204413:20204484:20205945:20206088:20206614:20206652,	20205946	20206088	20206035	20206035	Frame_Shift_Del	A	-	p.C229fs
LIHC	TCGA-G3-A3CJ-01	RPS6KA3	ENST00000438357.1,ENST00000540702.1,ENST00000544447.1,ENST00000379565.3,ENST00000492128.1	chrX	20222139:20222221:20227405:20227522:20252875:20252932,	20227406	20227522	20227433	20227433	Frame_Shift_Del	T	-	p.K72fs
LIHC	TCGA-G3-A3CJ-01	CNKSR2	ENST00000379510.3,ENST00000279451.4,ENST00000425654.2	chrX	21519637:21519706:21534602:21534749:21544984:21545118,	21534603	21534749	21534605	21534605	Frame_Shift_Del	G	-	p.V271fs
LIHC	TCGA-G3-A3CJ-01	SMS	ENST00000379404.1	chrX	21958895:21958991:21985313:21985434:21995178:21995354,	21985314	21985434	21985329	21985329	Frame_Shift_Del	T	-	p.I22fs
LIHC	TCGA-G3-A3CJ-01	ACOT9	ENST00000336430.7,ENST00000494361.1,ENST00000379303.5,ENST00000492081.1,ENST00000379295.1	chrX	23739997:23740101:23740786:23740870:23748643:23748681,	23740787	23740870	23740844	23740844	Frame_Shift_Del	T	-	p.I143fs
LIHC	TCGA-G3-A3CJ-01	SAT1	ENST00000379254.1	chrX	23801916:23802000:23803444:23803546:23803636:23803677,23801777:23801826:23803444:23803546:23803636:23803677,	23803445	23803546	23803461	23803461	Frame_Shift_Del	T	-	p.G73fs
LIHC	TCGA-G3-A3CJ-01	EIF2S3	ENST00000253039.4	chrX	24084114:24084209:24086080:24086225:24089674:24089844,	24086081	24086225	24086120	24086120	Frame_Shift_Del	A	-	p.K303fs
LIHC	TCGA-G3-A3CJ-01	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000379188.3	chrX	24190872:24190917:24197299:24197887:24225442:24225592,	24197300	24197887	24197357	24197357	Frame_Shift_Del	T	-	p.V39fs
LIHC	TCGA-G3-A3CJ-01	GK	ENST00000481024.1,ENST00000378943.3,ENST00000378946.3,ENST00000427190.1,ENST00000487652.1,ENST00000378945.3,ENST00000479048.1	chrX	30695491:30695569:30709239:30709316:30712516:30712654,	30709240	30709316	30709284	30709284	Frame_Shift_Del	A	-	p.K128fs
LIHC	TCGA-G3-A3CJ-01	DMD	ENST00000361471.4,ENST00000359836.1,ENST00000474231.1,ENST00000378723.3,ENST00000358062.2,ENST00000378702.4,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31165391:31165635:31187559:31187718:31190464:31190530,	31187560	31187718	31187660	31187660	Frame_Shift_Del	G	-	p.L3485fs
LIHC	TCGA-G3-A3CJ-01	RPGR	ENST00000474584.1,ENST00000342811.3,ENST00000339363.3,ENST00000309513.3,ENST00000338898.3,ENST00000482855.1,ENST00000378505.2	chrX	38182105:38182198:38182651:38182777:38186592:38186675,	38182652	38182777	38182705	38182705	Frame_Shift_Del	T	-	p.N34fs
LIHC	TCGA-G3-A3CJ-01	CXorf38	ENST00000378421.1	chrX	40496258:40496408:40498260:40499572:40506258:40506393,	40498261	40499572	40498316	40498316	Frame_Shift_Del	A	-	p.L20fs
LIHC	TCGA-G3-A3CJ-01	CXorf38	ENST00000378426.1	chrX	40496258:40496408:40498260:40498424:40506258:40506393,	40498261	40498424	40498316	40498316	Frame_Shift_Del	A	-	p.L20fs
LIHC	TCGA-G3-A3CJ-01	CXorf38	ENST00000327877.5	chrX	40496258:40496408:40498260:40498380:40506258:40506393,	40498261	40498380	40498316	40498316	Frame_Shift_Del	A	-	p.L20fs
LIHC	TCGA-G3-A3CJ-01	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1	chrX	41205757:41205875:41206111:41206265:41206564:41206704,	41206112	41206265	41206211	41206211	Frame_Shift_Del	A	-	p.E572fs
LIHC	TCGA-G3-A3CJ-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44942704:44942853:44945109:44945224:44948987:44949175,	44945110	44945224	44945192	44945192	Frame_Shift_Del	T	-	p.G1172fs
LIHC	TCGA-G3-A3CJ-01	ARAF	ENST00000377045.4	chrX	47424650:47424749:47426037:47426179:47426282:47426310,	47426038	47426179	47426094	47426094	Frame_Shift_Del	C	-	p.A205fs
LIHC	TCGA-G3-A3CJ-01	ARAF	ENST00000377045.4	chrX	47424650:47424749:47426037:47426179:47426282:47426310,	47426038	47426179	47426154	47426154	Frame_Shift_Del	C	-	p.A225fs
LIHC	TCGA-G3-A3CJ-01	ELK1	ENST00000376983.3,ENST00000247161.3,ENST00000592066.1	chrX	47496411:47496513:47497149:47497581:47498293:47498737,	47497150	47497581	47497480	47497480	Frame_Shift_Del	C	-	p.G252fs
LIHC	TCGA-G3-A3CJ-01	WAS	ENST00000483750.1,ENST00000376701.4	chrX	48544469:48544523:48545169:48545344:48546442:48546485,	48545170	48545344	48545191	48545191	Frame_Shift_Del	C	-	p.S194fs
LIHC	TCGA-G3-A3CJ-01	PIM2	ENST00000376509.4	chrX	48771380:48771571:48771671:48771848:48772296:48772665,	48771672	48771848	48771684	48771684	Frame_Shift_Del	G	-	p.H254fs
LIHC	TCGA-G3-A3CJ-01	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49079387:49079595:49081222:49081448:49082370:49082531,	49081223	49081448	49081291	49081291	Frame_Shift_Del	G	-	p.G614fs
LIHC	TCGA-G3-A3CJ-01	CACNA1F	ENST00000376265.2,ENST00000376251.1,ENST00000323022.5	chrX	49086681:49086834:49086928:49087071:49087311:49087451,	49086929	49087071	49086935	49086935	Frame_Shift_Del	C	-	p.V220fs
LIHC	TCGA-G3-A3CJ-01	MAGED1	ENST00000375695.2	chrX	51637371:51637445:51637722:51637890:51638148:51638340,	51637723	51637890	51637805	51637806	Frame_Shift_Del	TG	-	p.L43fs
LIHC	TCGA-G3-A3CJ-01	SMC1A	ENST00000322213.4	chrX	53407540:53407651:53407938:53408008:53409152:53409304,	53407939	53408008	53407993	53407993	Frame_Shift_Del	G	-	p.P1151fs
LIHC	TCGA-G3-A3CJ-01	HUWE1	ENST00000218328.8,ENST00000342160.3,ENST00000262854.6	chrX	53672262:53672415:53674310:53674517:53675154:53675253,	53674311	53674517	53674337	53674337	Frame_Shift_Del	A	-	p.S109fs
LIHC	TCGA-G3-A3CJ-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784025	54784025	Frame_Shift_Del	C	-	p.V828fs
LIHC	TCGA-G3-A3CJ-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784530	54784530	Frame_Shift_Del	G	-	p.P659fs
LIHC	TCGA-G3-A3CJ-01	FAAH2	ENST00000374900.4	chrX	57405083:57405219:57407344:57407462:57458350:57458470,	57407345	57407462	57407415	57407415	Frame_Shift_Del	T	-	p.F317fs
LIHC	TCGA-G3-A3CJ-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393484	65393484	Frame_Shift_Del	C	-	p.P211fs
LIHC	TCGA-G3-A3CJ-01	AR	ENST00000396043.2,ENST00000374690.3	chrX	66941674:66941805:66942668:66942826:66943527:66943778,	66942669	66942826	66942693	66942693	Frame_Shift_Del	A	-	p.Q825fs
LIHC	TCGA-G3-A3CJ-01	IGBP1	ENST00000356413.4	chrX	69353572:69353985:69354372:69354666:69366482:69366678,	69354373	69354666	69354566	69354566	Frame_Shift_Del	A	-	p.K128fs
LIHC	TCGA-G3-A3CJ-01	IGBP1	ENST00000356413.4,ENST00000342206.6	chrX	69368610:69368690:69370059:69370172:69385682:69386174,	69370060	69370172	69370150	69370150	Frame_Shift_Del	G	-	p.Q283fs
LIHC	TCGA-G3-A3CJ-01	GDPD2	ENST00000374382.3	chrX	69642990:69643232:69644825:69644939:69645203:69645307,	69644826	69644939	69644869	69644869	Frame_Shift_Del	C	-	p.A12fs
LIHC	TCGA-G3-A3CJ-01	IL2RG	ENST00000464642.1,ENST00000512747.1,ENST00000374202.2	chrX	70330446:70330538:70330746:70330900:70331274:70331298,	70330747	70330900	70330775	70330775	Frame_Shift_Del	G	-	p.Q81fs
LIHC	TCGA-G3-A3CJ-01	MED12	ENST00000374080.3,ENST00000444034.1	chrX	70356728:70356879:70357036:70357233:70357407:70357485,	70357037	70357233	70357094	70357094	Frame_Shift_Del	C	-	p.T1870fs
LIHC	TCGA-G3-A3CJ-01	MED12	ENST00000333646.6	chrX	70356728:70356879:70357036:70357242:70357407:70357485,	70357037	70357242	70357094	70357094	Frame_Shift_Del	C	-	p.T1870fs
LIHC	TCGA-G3-A3CJ-01	PHKA1	ENST00000373539.3,ENST00000373545.3	chrX	71812953:71813124:71819665:71819716:71821840:71821879,	71819666	71819716	71819669	71819669	Frame_Shift_Del	A	-	p.F981fs
LIHC	TCGA-G3-A3CJ-01	SLC16A2	ENST00000590447.1,ENST00000587091.1,ENST00000276033.5	chrX	73740954:73740969:73744193:73744644:73745584:73745728,	73744194	73744644	73744356	73744356	Frame_Shift_Del	C	-	p.F320fs
LIHC	TCGA-G3-A3CJ-01	SLC16A2	ENST00000587091.1,ENST00000276033.5	chrX	73745584:73745728:73749047:73749276:73751167:73752443,	73749048	73749276	73749172	73749172	Frame_Shift_Del	C	-	p.A506fs
LIHC	TCGA-G3-A3CJ-01	ABCB7	ENST00000529949.1,ENST00000339447.4,ENST00000534570.1,ENST00000253577.3,ENST00000373394.3	chrX	74285042:74285076:74288841:74288971:74289125:74289289,	74288842	74288971	74288913	74288913	Frame_Shift_Del	A	-	p.Y531fs
LIHC	TCGA-G3-A3CJ-01	ABCB7	ENST00000529949.1,ENST00000339447.4,ENST00000253577.3,ENST00000373394.3	chrX	74290199:74290357:74291343:74291518:74293523:74293611,	74291344	74291518	74291351	74291351	Frame_Shift_Del	A	-	p.I401fs
LIHC	TCGA-G3-A3CJ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918921	76918921	Frame_Shift_Del	T	-	p.K1357fs
LIHC	TCGA-G3-A3CJ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937188	76937188	Frame_Shift_Del	T	-	p.N1187fs
LIHC	TCGA-G3-A3CJ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939946	76939946	Frame_Shift_Del	A	-	p.C268fs
LIHC	TCGA-G3-A3CJ-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77243737:77244227:77244728:77245454:77253974:77254181,	77244729	77245454	77245318	77245318	Frame_Shift_Del	A	-	p.S400fs
LIHC	TCGA-G3-A3CJ-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83371236:83371295:83372067:83372156:83372391:83372462,	83372068	83372156	83372076	83372076	Frame_Shift_Del	T	-	p.N314fs
LIHC	TCGA-G3-A3CJ-01	HDX	ENST00000506585.2,ENST00000373177.2,ENST00000297977.5	chrX	83591808:83591888:83599257:83599465:83616473:83616620,	83599258	83599465	83599299	83599299	Frame_Shift_Del	T	-	p.N540fs
LIHC	TCGA-G3-A3CJ-01	CHM	ENST00000358786.4,ENST00000357749.2	chrX	85233770:85233895:85236740:85236813:85282494:85282561,	85236741	85236813	85236769	85236769	Frame_Shift_Del	C	-	p.G54fs
LIHC	TCGA-G3-A3CJ-01	SRPX2	ENST00000373004.3	chrX	99920239:99920366:99920532:99920654:99921750:99921930,	99920533	99920654	99920544	99920544	Frame_Shift_Del	G	-	p.R224fs
LIHC	TCGA-G3-A3CJ-01	SYTL4	ENST00000263033.5,ENST00000454200.2,ENST00000372989.1,ENST00000455616.1,ENST00000276141.6	chrX	99941675:99941778:99942063:99942242:99943347:99943440,	99942064	99942242	99942091	99942091	Frame_Shift_Del	G	-	p.A386fs
LIHC	TCGA-G3-A3CJ-01	TRMT2B	ENST00000545398.1,ENST00000372931.5,ENST00000372935.1,ENST00000338687.7,ENST00000372936.3,ENST00000372939.1	chrX	100276089:100276304:100276956:100277051:100278458:100278605,	100276957	100277051	100277020	100277020	Frame_Shift_Del	T	-	p.K218fs
LIHC	TCGA-G3-A3CJ-01	TRMT2B	ENST00000372931.5,ENST00000338687.7,ENST00000372936.3,ENST00000372939.1	chrX	100296305:100296360:100297030:100297301:100306632:100306722,100296305:100296360:100297030:100297301:100306772:100307071,100296305:100296360:100297030:100297301:100306239:100306355,	100297031	100297301	100297083	100297083	Frame_Shift_Del	T	-	p.S66fs
LIHC	TCGA-G3-A3CJ-01	DRP2	ENST00000402866.1,ENST00000395209.3,ENST00000372916.4,ENST00000541709.1,ENST00000538510.1	chrX	100503502:100503588:100505411:100505569:100505905:100506072,	100505412	100505569	100505525	100505525	Frame_Shift_Del	G	-	p.G553fs
LIHC	TCGA-G3-A3CJ-01	TMSB15B	ENST00000567181.1	chrX	103217247:103217296:103219078:103219195:103227463:103229570,	103219079	103219195	103219193	103219193	Frame_Shift_Del	A	-	p.E33fs
LIHC	TCGA-G3-A3CJ-01	TBC1D8B	ENST00000357242.5,ENST00000310452.2	chrX	106069259:106069467:106070399:106070567:106082537:106082687,	106070400	106070567	106070420	106070420	Frame_Shift_Del	A	-	p.T352fs
LIHC	TCGA-G3-A3CJ-01	TBC1D8B	ENST00000357242.5,ENST00000276175.3	chrX	106112714:106112771:106113945:106114043:106116799:106117347,	106113946	106114043	106113954	106113954	Frame_Shift_Del	A	-	p.K960fs
LIHC	TCGA-G3-A3CJ-01	TBC1D8B	ENST00000357242.5,ENST00000276175.3	chrX	106112714:106112771:106113945:106114043:106116799:106117347,	106113946	106114043	106113997	106113997	Frame_Shift_Del	T	-	p.L974fs
LIHC	TCGA-G3-A3CJ-01	PAK3	ENST00000518291.1,ENST00000360648.4,ENST00000429193.1	chrX	110385323:110385424:110388087:110388150:110390964:110391118,110385323:110385424:110388087:110388150:110389748:110389793,	110388088	110388150	110388092	110388092	Frame_Shift_Del	C	-	p.S94fs
LIHC	TCGA-G3-A3CJ-01	WDR44	ENST00000254029.3,ENST00000371848.3,ENST00000371825.3	chrX	117566743:117566857:117570664:117570787:117575330:117575522,	117570665	117570787	117570775	117570775	Frame_Shift_Del	T	-	p.A654fs
LIHC	TCGA-G3-A3CJ-01	WDR44	ENST00000254029.3,ENST00000371848.3,ENST00000371825.3	chrX	117570664:117570787:117576206:117576308:117576527:117576643,117575330:117575522:117576206:117576308:117576527:117576643,	117576207	117576308	117576279	117576279	Frame_Shift_Del	G	-	p.G747fs
LIHC	TCGA-G3-A3CJ-01	IL13RA1	ENST00000371642.1,ENST00000371666.3	chrX	117883665:117883741:117892017:117892205:117895100:117895252,	117892018	117892205	117892032	117892032	Frame_Shift_Del	A	-	p.E168fs
LIHC	TCGA-G3-A3CJ-01	SEPT6	ENST00000489216.1,ENST00000394617.2,ENST00000394610.1,ENST00000460411.1,ENST00000360156.7,ENST00000354416.3,ENST00000343984.5,ENST00000394616.4,ENST00000354228.4	chrX	118774654:118774751:118783899:118784061:118786816:118787003,	118783900	118784061	118784026	118784026	Frame_Shift_Del	G	-	p.A188fs
LIHC	TCGA-G3-A3CJ-01	UPF3B	ENST00000345865.2,ENST00000276201.2	chrX	118967988:118968990:118971719:118972014:118972329:118972490,	118971720	118972014	118971767	118971767	Frame_Shift_Del	T	-	p.T419fs
LIHC	TCGA-G3-A3CJ-01	UPF3B	ENST00000345865.2,ENST00000276201.2,ENST00000478840.1	chrX	118975038:118975221:118975697:118975741:118977153:118977264,	118975698	118975741	118975705	118975705	Frame_Shift_Del	T	-	p.N206fs
LIHC	TCGA-G3-A3CJ-01	UPF3B	ENST00000345865.2,ENST00000276201.2,ENST00000478840.1	chrX	118975038:118975221:118975697:118975741:118977153:118977264,	118975698	118975741	118975735	118975735	Frame_Shift_Del	T	-	p.K196fs
LIHC	TCGA-G3-A3CJ-01	TMEM255A	ENST00000309720.5,ENST00000371369.4,ENST00000519908.1,ENST00000440464.1	chrX	119425105:119425195:119427843:119427906:119438203:119438268,	119427844	119427906	119427852	119427852	Frame_Shift_Del	T	-	p.R86fs
LIHC	TCGA-G3-A3CJ-01	LAMP2	ENST00000200639.4	chrX	119565102:119565317:119575584:119575749:119576453:119576517,	119575585	119575749	119575705	119575705	Frame_Shift_Del	G	-	p.L325fs
LIHC	TCGA-G3-A3CJ-01	MCTS1	ENST00000371317.5	chrX	119737834:119738102:119739261:119739414:119739933:119739991,	119739262	119739414	119739302	119739302	Frame_Shift_Del	A	-	p.K19fs
LIHC	TCGA-G3-A3CJ-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1,ENST00000433883.1	chrX	122805519:122805612:122820397:122820564:122829870:122830004,	122820398	122820564	122820522	122820522	Frame_Shift_Del	A	-	p.L215fs
LIHC	TCGA-G3-A3CJ-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000394477.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1,ENST00000394478.1	chrX	123156380:123156521:123159689:123159768:123164810:123164898,	123159690	123159768	123159741	123159741	Frame_Shift_Del	A	-	p.G32fs
LIHC	TCGA-G3-A3CJ-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128633708:128633818:128638710:128638779:128640056:128640188,	128638711	128638779	128638732	128638732	Frame_Shift_Del	T	-	p.K382fs
LIHC	TCGA-G3-A3CJ-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128649899:128649971:128650307:128650474:128652337:128652424,	128650308	128650474	128650351	128650351	Frame_Shift_Del	G	-	p.R129fs
LIHC	TCGA-G3-A3CJ-01	OCRL	ENST00000357121.5,ENST00000371113.4	chrX	128709116:128709227:128709873:128710039:128710293:128710529,	128709874	128710039	128709951	128709951	Frame_Shift_Del	C	-	p.C597fs
LIHC	TCGA-G3-A3CJ-01	ZNF280C	ENST00000370978.4	chrX	129354322:129354454:129360732:129360879:129361655:129361756,	129360733	129360879	129360822	129360822	Frame_Shift_Del	G	-	p.H436fs
LIHC	TCGA-G3-A3CJ-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130407484:130407905:130408056:130408180:130408572:130408740,	130408057	130408180	130408103	130408103	Frame_Shift_Del	C	-	p.V1269fs
LIHC	TCGA-G3-A3CJ-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130409952:130410222:130410912:130411200:130411829:130412108,	130410913	130411200	130411036	130411036	Frame_Shift_Del	C	-	p.A820fs
LIHC	TCGA-G3-A3CJ-01	MOSPD1	ENST00000370783.3,ENST00000491609.1	chrX	134023152:134023222:134025508:134025670:134030846:134031064,	134025509	134025670	134025531	134025531	Frame_Shift_Del	T	-	p.K196fs
LIHC	TCGA-G3-A3CJ-01	ZNF75D	ENST00000370766.3	chrX	134426206:134426399:134427655:134428184:134429693:134429848,	134427656	134428184	134427886	134427886	Frame_Shift_Del	T	-	p.T61fs
LIHC	TCGA-G3-A3CJ-01	HTATSF1	ENST00000535601.1,ENST00000218364.4	chrX	135584936:135585100:135586522:135586622:135591249:135591339,	135586523	135586622	135586616	135586616	Frame_Shift_Del	T	-	p.D276fs
LIHC	TCGA-G3-A3CJ-01	F9	ENST00000394090.2	chrX	138623245:138623348:138630521:138630650:138633220:138633406,138619520:138619545:138630521:138630650:138633220:138633406,	138630522	138630650	138630560	138630560	Frame_Shift_Del	T	-	p.F144fs
LIHC	TCGA-G3-A3CJ-01	MCF2	ENST00000370573.4,ENST00000414978.1,ENST00000370578.4,ENST00000370576.4,ENST00000519895.1,ENST00000520602.1,ENST00000338585.6	chrX	138711853:138712003:138713553:138713670:138714493:138714613,	138713554	138713670	138713609	138713609	Frame_Shift_Del	G	-	p.P138fs
LIHC	TCGA-G3-A3CJ-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2,ENST00000471746.1	chrX	138850418:138850593:138856848:138857112:138864705:138864792,	138856849	138857112	138856955	138856955	Frame_Shift_Del	T	-	p.T704fs
LIHC	TCGA-G3-A3CJ-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138867384:138867458:138869331:138869403:138870350:138870502,	138869332	138869403	138869397	138869397	Frame_Shift_Del	C	-	p.G509fs
LIHC	TCGA-G3-A3CJ-01	MAMLD1	ENST00000432680.2	chrX	149531685:149531797:149613719:149613878:149631037:149631112,149531685:149531797:149613719:149613878:149638016:149638254,	149613720	149613878	149613825	149613825	Frame_Shift_Del	C	-	p.P15fs
LIHC	TCGA-G3-A3CJ-01	MAMLD1	ENST00000262858.5,ENST00000370401.2,ENST00000426613.2	chrX	149639693:149639762:149641951:149642074:149671543:149671787,	149641952	149642074	149642018	149642018	Frame_Shift_Del	A	-	p.N662fs
LIHC	TCGA-G3-A3CJ-01	ZNF185	ENST00000370270.2,ENST00000535861.1,ENST00000449285.2,ENST00000370268.4	chrX	152091263:152091353:152097118:152097205:152100215:152100320,	152097119	152097205	152097122	152097122	Frame_Shift_Del	A	-	p.S277fs
LIHC	TCGA-G3-A3CJ-01	ZNF185	ENST00000370270.2,ENST00000318529.8,ENST00000535861.1,ENST00000324823.6,ENST00000449285.2,ENST00000370268.4,ENST00000539731.1,ENST00000426821.2,ENST00000454925.1,ENST00000318504.7	chrX	152128242:152128440:152132382:152132493:152133990:152134071,	152132383	152132493	152132452	152132452	Frame_Shift_Del	T	-	p.Y590fs
LIHC	TCGA-G3-A3CJ-01	PNCK	ENST00000370142.1,ENST00000466074.1,ENST00000472324.1,ENST00000393831.2,ENST00000447676.2,ENST00000340888.3,ENST00000370145.4	chrX	152935187:152935581:152935904:152936049:152936198:152936269,152935474:152935585:152935904:152936049:152936198:152936269,	152935905	152936049	152935921	152935921	Frame_Shift_Del	G	-	p.P364fs
LIHC	TCGA-G3-A3CJ-01	PLXNB3	ENST00000538282.1,ENST00000361971.5,ENST00000538776.1,ENST00000538966.1	chrX	153036764:153036858:153036940:153037110:153037318:153037470,	153036941	153037110	153037068	153037068	Frame_Shift_Del	G	-	p.P848fs
LIHC	TCGA-G3-A3CJ-01	SSR4	ENST00000460616.1,ENST00000485612.1,ENST00000370087.1,ENST00000370086.3,ENST00000320857.3,ENST00000486204.1,ENST00000471880.1	chrX	153061893:153062007:153062912:153062987:153063179:153063269,	153062913	153062987	153062942	153062942	Frame_Shift_Del	A	-	p.G72fs
LIHC	TCGA-G3-A3CJ-01	L1CAM	ENST00000496122.1,ENST00000370055.1,ENST00000543994.1,ENST00000361981.3,ENST00000370060.1,ENST00000361699.4,ENST00000538883.1,ENST00000370057.3	chrX	153133005:153133008:153133254:153133365:153133452:153133577,	153133255	153133365	153133262	153133262	Frame_Shift_Del	G	-	p.P644fs
LIHC	TCGA-G3-A3CJ-01	HCFC1	ENST00000354233.3,ENST00000310441.7,ENST00000369984.4	chrX	153221641:153221862:153222075:153222214:153222368:153222511,	153222076	153222214	153222153	153222153	Frame_Shift_Del	C	-	p.G853fs
LIHC	TCGA-G3-A3CJ-01	HCFC1	ENST00000310441.7,ENST00000369984.4	chrX	153224781:153224942:153225252:153225612:153225685:153225865,	153225253	153225612	153225280	153225280	Frame_Shift_Del	A	-	p.S473fs
LIHC	TCGA-G3-A3CJ-01	IRAK1	ENST00000369980.3,ENST00000369973.3	chrX	153277309:153277368:153278493:153278884:153279492:153279555,153278035:153278129:153278493:153278884:153281482:153281524,153278035:153278129:153278493:153278884:153279492:153279555,	153278494	153278884	153278605	153278605	Frame_Shift_Del	T	-	p.S607fs
LIHC	TCGA-G3-A3CJ-01	IRAK1	ENST00000437278.1	chrX	153278035:153278129:153278493:153278794:153279492:153279555,153278035:153278129:153278493:153278794:153281482:153281524,	153278494	153278794	153278605	153278605	Frame_Shift_Del	T	-	p.S607fs
LIHC	TCGA-G3-A3CJ-01	FLNA	ENST00000490936.1,ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153581663:153581825:153581921:153582095:153582282:153582407,	153581922	153582095	153581991	153581991	Frame_Shift_Del	C	-	p.D1923fs
LIHC	TCGA-G3-A3CJ-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153588357:153588955:153589675:153589938:153590037:153590155,	153589676	153589938	153589777	153589777	Frame_Shift_Del	G	-	p.R1036fs
LIHC	TCGA-G3-A3CJ-01	EMD	ENST00000369842.4,ENST00000428228.1,ENST00000468294.1,ENST00000492448.1	chrX	153608049:153608154:153608301:153608379:153608593:153608727,	153608302	153608379	153608319	153608319	Frame_Shift_Del	G	-	p.G69fs
LIHC	TCGA-G3-A3CJ-01	ZFY	ENST00000383052.1	chrY	2803545:2803810:2821949:2822038:2829114:2829327,2803321:2803487:2821949:2822038:2829114:2829327,	2821950	2822038	2822023	2822023	Frame_Shift_Del	T	-	p.F17fs
LIHC	TCGA-G3-A3CJ-01	TBL1Y	ENST00000383032.1,ENST00000346432.3,ENST00000355162.2	chrY	6954330:6954458:6955307:6955473:6958129:6958231,	6955308	6955473	6955410	6955410	Frame_Shift_Del	C	-	p.S461fs
LIHC	TCGA-G3-A3CJ-01	USP9Y	ENST00000426564.2,ENST00000338981.3	chrY	14870435:14870572:14872413:14872547:14883001:14883089,	14872414	14872547	14872503	14872503	Frame_Shift_Del	A	-	p.E619fs
LIHC	TCGA-G3-A3CJ-01	KDM5D	ENST00000447300.1	chrY	21901413:21901548:21903203:21903374:21903620:21903743,21897506:21897636:21903203:21903374:21903620:21903743,	21903204	21903374	21903225	21903225	Frame_Shift_Del	A	-	p.F167fs
LIHC	TCGA-G3-A3CJ-01	EIF1AY	ENST00000382772.3,ENST00000465253.1	chrY	22737679:22737773:22741493:22741577:22744475:22744579,	22741494	22741577	22741542	22741542	Frame_Shift_Del	A	-	p.E22fs
LIHC	TCGA-G3-A3CK-01	TMEM33	ENST00000513702.1,ENST00000508448.1,ENST00000325094.5,ENST00000504986.1	chr4	41940618:41940713:41941212:41941400:41945763:41945831,	41941213	41941400	41941283	41941289	Frame_Shift_Del	CATCAAA	-	p.HQR71fs
LIHC	TCGA-G3-A3CK-01	TMEM33	ENST00000513702.1,ENST00000508448.1,ENST00000325094.5,ENST00000504986.1	chr4	41940618:41940713:41941212:41941400:41945763:41945831,	41941213	41941400	41941291	41941298	Frame_Shift_Del	ATTACCAC	-	p.RLPH73fs
LIHC	TCGA-G3-A3CK-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471453	93471453	Frame_Shift_Del	T	-	p.K96fs
LIHC	TCGA-G3-A3CK-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471453	93471453	Frame_Shift_Del	T	-	p.K96fs
LIHC	TCGA-G3-A5SI-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953741	48953742	Frame_Shift_Ins	-	G	p.S449fs
LIHC	TCGA-G3-A5SL-01	NELFE	ENST00000492539.1	chr6	31924732:31924787:31926084:31926231:31926668:31926731,	31926085	31926231	31926222	31926223	Frame_Shift_Ins	-	T	p.V8fs
LIHC	TCGA-G3-A5SL-01	NELFE	ENST00000492185.1,ENST00000481121.1,ENST00000491139.1,ENST00000441998.1,ENST00000444811.2	chr6	31924732:31924787:31926148:31926231:31926668:31926731,	31926149	31926231	31926222	31926223	Frame_Shift_Ins	-	T	p.V8fs
LIHC	TCGA-G3-A5SL-01	MPI	ENST00000563786.1	chr15	75182402:75182430:75182778:75182995:75183719:75183830,	75182779	75182995	75182913	75182914	Frame_Shift_Ins	-	G	p.R21fs
LIHC	TCGA-G3-A5SL-01	MPI	ENST00000569233.1	chr15	75182417:75182542:75182867:75182995:75183719:75183830,75182402:75182430:75182867:75182995:75183719:75183830,75182402:75182430:75182867:75182995:75183319:75183376,	75182868	75182995	75182913	75182914	Frame_Shift_Ins	-	G	p.R21fs
LIHC	TCGA-G3-A5SL-01	MPI	ENST00000564633.1	chr15	75182402:75182430:75182896:75182995:75183719:75183830,	75182897	75182995	75182913	75182914	Frame_Shift_Ins	-	G	p.R21fs
LIHC	TCGA-G3-A5SL-01	MPI	ENST00000562606.1	chr15	75182402:75182430:75182893:75182995:75183719:75183830,	75182894	75182995	75182913	75182914	Frame_Shift_Ins	-	G	p.R21fs
LIHC	TCGA-G3-A7M5-01	SAMD11	ENST00000342066.3,ENST00000455979.1,ENST00000341065.4	chr1	877789:877868:877938:878438:878632:878757,	877939	878438	878348	878348	Frame_Shift_Del	G	-	p.G493fs
LIHC	TCGA-G3-A7M5-01	BTBD8	ENST00000342818.3,ENST00000540648.1	chr1	92546094:92546277:92554254:92554452:92568029:92568226,	92554255	92554452	92554445	92554445	Frame_Shift_Del	T	-	p.F114fs
LIHC	TCGA-G3-A7M5-01	FCRL2	ENST00000368181.4	chr1	157736644:157736761:157740198:157740456:157745564:157745585,	157740199	157740456	157740434	157740434	Frame_Shift_Del	G	-	p.P25fs
LIHC	TCGA-G3-A7M5-01	RPSA	ENST00000458478.1,ENST00000301821.6,ENST00000478027.1	chr3	39450202:39450215:39452244:39452490:39453139:39453268,	39452245	39452490	39452291	39452291	Frame_Shift_Del	C	-	p.A100fs
LIHC	TCGA-G3-A7M5-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496721	15496722	Frame_Shift_Ins	-	G	p.G422fs
LIHC	TCGA-G3-A7M5-01	JMJD1C	ENST00000402544.1,ENST00000469152.1,ENST00000399262.2,ENST00000542921.1,ENST00000399251.1	chr10	64975197:64975215:64975312:64975456:64976966:64977091,	64975313	64975456	64975367	64975367	Frame_Shift_Del	A	-	p.I256fs
LIHC	TCGA-G3-A7M5-01	JMJD1C	ENST00000489372.2	chr10	64975197:64975215:64975312:64975377:64976966:64977091,	64975313	64975377	64975367	64975367	Frame_Shift_Del	A	-	p.I256fs
LIHC	TCGA-G3-A7M5-01	CNNM1	ENST00000370528.3,ENST00000356713.4,ENST00000446890.1	chr10	101124173:101124273:101124711:101124759:101136811:101136975,	101124712	101124759	101124744	101124744	Frame_Shift_Del	G	-	p.G721fs
LIHC	TCGA-G3-A7M5-01	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34105667:34105780:34109062:34109159:34110778:34110885,	34109063	34109159	34109120	34109120	Frame_Shift_Del	G	-	p.E3521fs
LIHC	TCGA-G3-A7M6-01	ERI2	ENST00000300005.3	chr16	20800800:20800879:20802171:20802254:20810584:20810673,	20802172	20802254	20802201	20802219	Frame_Shift_Del	GTCCCCTGAGGCCAGATCA	-	p.SDLASGD256fs
LIHC	TCGA-G3-A7M8-01	CSGALNACT1	ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000454498.2,ENST00000332246.6	chr8	19277893:19278029:19297340:19297442:19315936:19316153,	19297341	19297442	19297391	19297391	Frame_Shift_Del	A	-	p.F301fs
LIHC	TCGA-G3-A7M9-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578264	7578270	Frame_Shift_Del	GATAAGA	-	p.HLI193fs
LIHC	TCGA-G3-A7M9-01	SPHK1	ENST00000545180.1,ENST00000588682.1,ENST00000590379.1,ENST00000323374.4,ENST00000592299.1,ENST00000392496.3	chr17	74381531:74381735:74382065:74382218:74382301:74382396,	74382066	74382218	74382080	74382096	Frame_Shift_Del	GGCGTGCTCCCGCGGCC	-	p.GVLPRP9fs
LIHC	TCGA-K7-A5RG-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452975	195452978	Frame_Shift_Del	CCCA	-	p.PT330fs
LIHC	TCGA-K7-A6G5-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000511370.1,ENST00000505649.1,ENST00000503124.1	chr4	74283982:74284028:74285223:74285356:74286808:74286910,74284016:74284028:74285223:74285356:74285970:74286038,	74285224	74285356	74285295	74285296	Frame_Shift_Ins	-	C	p.C575fs
LIHC	TCGA-KR-A7K0-01	CLCN3	ENST00000515420.1	chr4	170616781:170616843:170618339:170618430:170618511:170618885,	170618340	170618430	170618424	170618424	Frame_Shift_Del	C	-	p.P368fs
LIHC	TCGA-KR-A7K0-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728375	50728379	Frame_Shift_Del	GGTGG	-	p.ST212fs
LIHC	TCGA-KR-A7K0-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728381	50728387	Frame_Shift_Del	CAGGTAG	-	p.GYL209fs
LIHC	TCGA-KR-A7K2-01	MSMO1	ENST00000393766.2	chr4	166248872:166248916:166258940:166259089:166259803:166259930,	166258941	166259089	166259057	166259058	Frame_Shift_Ins	-	A	p.NS124fs
LIHC	TCGA-KR-A7K7-01	SREBF1	ENST00000435530.2,ENST00000261646.5,ENST00000338854.5	chr17	17722857:17723039:17723403:17723835:17740040:17740131,	17723404	17723835	17723609	17723613	Frame_Shift_Del	TGGAG	-	p.TP135fs
LIHC	TCGA-MI-A75E-01	PPP2R5A	ENST00000537030.3,ENST00000261461.2	chr1	212515529:212515622:212519144:212519275:212520688:212520748,	212519145	212519275	212519188	212519197	Frame_Shift_Del	TCCTGAAGAC	-	p.FLKT206fs
LIHC	TCGA-MI-A75G-01	TPM2	ENST00000329305.2,ENST00000378300.5,ENST00000360958.2,ENST00000378292.3,ENST00000471212.1	chr9	35685430:35685548:35685643:35685777:35689142:35689268,	35685644	35685777	35685682	35685688	Frame_Shift_Del	CTTCTGC	-	p.LQK110fs
LIHC	TCGA-MI-A75H-01	SAAL1	ENST00000524803.1	chr11	18102957:18103050:18105081:18105278:18108412:18108507,	18105082	18105278	18105155	18105155	Frame_Shift_Del	T	-	p.D390fs
LIHC	TCGA-MI-A75H-01	SAAL1	ENST00000534721.1	chr11	18102957:18103050:18105081:18105256:18108412:18108507,	18105082	18105256	18105155	18105155	Frame_Shift_Del	T	-	p.D390fs
LIHC	TCGA-MI-A75H-01	SAAL1	ENST00000300013.4	chr11	18102957:18103050:18105081:18105275:18108412:18108507,	18105082	18105275	18105155	18105155	Frame_Shift_Del	T	-	p.D390fs
LIHC	TCGA-MI-A75H-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462324	5462325	Frame_Shift_Ins	-	A	p.W564fs
LIHC	TCGA-O8-A75V-01	FANCM	ENST00000267430.5,ENST00000555013.1,ENST00000554809.1,ENST00000542564.2,ENST00000556250.1	chr14	45650632:45650727:45650839:45650908:45652976:45653105,	45650840	45650908	45650881	45650882	Frame_Shift_Ins	-	A	p.VK1453fs
LIHC	TCGA-O8-A75V-01	RTN1	ENST00000267484.5	chr14	60074002:60074210:60193636:60194386:60212425:60213199,	60193637	60194386	60194074	60194095	Frame_Shift_Del	GAGGGCGGCGGGCCGCCCACGT	-	p.HVGGPPPS436fs
LIHC	TCGA-PD-A5DF-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74289942	74289954	Frame_Shift_Del	CCAGATCCTGATG	-	p.ASGSG119fs
LIHC	TCGA-RC-A6M3-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000495878.1,ENST00000393605.3,ENST00000334211.8,ENST00000465814.1,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72406586:72406673:72406762:72406910:72407593:72407697,	72406763	72406910	72406835	72406836	Frame_Shift_Ins	-	TGGGA	p.H1116fs
LIHC	TCGA-RC-A6M5-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000564954.1,ENST00000348261.5	chr16	1245028:1245083:1245431:1245565:1245925:1246023,	1245432	1245565	1245562	1245563	Frame_Shift_Ins	-	GG	p.G181fs
LIHC	TCGA-RC-A6M6-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105997	168105997	Frame_Shift_Del	C	-	p.P2699fs
LIHC	TCGA-RC-A6M6-01	RGMB	ENST00000504776.1	chr5	98106301:98106377:98109659:98109910:98115283:98115623,	98109660	98109910	98109681	98109682	Frame_Shift_Ins	-	C	p.AP10fs
LIHC	TCGA-RC-A6M6-01	RGMB	ENST00000308234.7,ENST00000434027.2	chr5	98106301:98106377:98109656:98109910:98115283:98115623,	98109657	98109910	98109681	98109682	Frame_Shift_Ins	-	C	p.AP10fs
LIHC	TCGA-RC-A6M6-01	KMT2C	ENST00000418673.1,ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151921519:151921701:151927007:151927112:151927304:151927406,	151927008	151927112	151927092	151927092	Frame_Shift_Del	G	-	p.G964fs
LIHC	TCGA-RC-A6M6-01	LMBR1	ENST00000461469.1,ENST00000540390.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000414218.1,ENST00000454132.1	chr7	156589167:156589186:156619298:156619438:156685621:156685681,156589167:156589186:156619298:156619438:156626446:156626486,	156619299	156619438	156619307	156619308	Frame_Shift_Ins	-	G	p.D104fs
LIHC	TCGA-RC-A6M6-01	RABL6	ENST00000436380.1,ENST00000311502.7,ENST00000432842.2,ENST00000357466.2,ENST00000484471.2,ENST00000425121.1,ENST00000371671.4,ENST00000371663.4,ENST00000464941.1	chr9	139720234:139720278:139722945:139722998:139723844:139723936,	139722946	139722998	139722950	139722951	Frame_Shift_Ins	-	AG	p.Q107fs
LIHC	TCGA-RC-A6M6-01	EVPL	ENST00000586740.1,ENST00000301607.3	chr17	74014241:74014339:74014526:74014681:74014994:74015141,	74014527	74014681	74014610	74014611	Frame_Shift_Ins	-	CCCT	p.A452fs
LIHC	TCGA-RC-A7SB-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491784	107491817	Frame_Shift_Del	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	-	p.FPDFSYSASSKI406fs
LIHC	TCGA-RC-A7SK-01	SEC24A	ENST00000398844.2	chr5	134033588:134033747:134039448:134039622:134041016:134041127,	134039449	134039622	134039534	134039535	Frame_Shift_Ins	-	T	p.C785fs
LIHC	TCGA-RC-A7SK-01	TUBB4B	ENST00000604929.1	chr9	140135739:140135869:140136172:140136281:140136362:140136473,	140136173	140136281	140136247	140136247	Frame_Shift_Del	G	-	p.L44fs
LIHC	TCGA-RC-A7SK-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67699601	67699602	Frame_Shift_Ins	-	T	p.I718fs
LIHC	TCGA-RG-A7D4-01	CNTROB	ENST00000380255.3,ENST00000576536.1,ENST00000563694.1	chr17	7851474:7851645:7851804:7851937:7852402:7852455,	7851805	7851937	7851880	7851898	Frame_Shift_Del	GGGGGGCTCTGCCTGCTGA	-	p.WGALPAE819fs
LIHC	TCGA-RG-A7D4-01	CNTROB	ENST00000380262.3	chr17	7851474:7851645:7851804:7852003:7852402:7852455,	7851805	7852003	7851880	7851898	Frame_Shift_Del	GGGGGGCTCTGCCTGCTGA	-	p.WGALPAE819fs
LIHC	TCGA-T1-A6J8-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30000996	30000997	Frame_Shift_Del	AA	-	p.F1539fs
LIHC	TCGA-UB-A7MB-01	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196712581:196712758:196714946:196715129:196716240:196716634,	196714947	196715129	196714988	196714988	Frame_Shift_Del	G	-	p.G1118fs
LIHC	TCGA-UB-A7MB-01	RB1	ENST00000267163.4	chr13	48951053:48951170:48953729:48953786:48954188:48954220,	48953730	48953786	48953748	48953748	Frame_Shift_Del	C	-	p.R451fs
LIHC	TCGA-UB-A7MD-01	HCFC2	ENST00000229330.4,ENST00000544223.2	chr12	104473222:104473431:104474523:104474608:104476277:104476384,	104474524	104474608	104474603	104474604	Frame_Shift_Del	AA	-	p.GN254fs
LIHC	TCGA-UB-A7MF-01	FAM72A	ENST00000470041.1,ENST00000367128.3,ENST00000431655.2,ENST00000367129.2,ENST00000341209.5	chr1	206141445:206141523:206145453:206145578:206153956:206154049,	206145454	206145578	206145524	206145525	Frame_Shift_Ins	-	TC	p.L101fs
LIHC	TCGA-UB-A7MF-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832181	24832187	Frame_Shift_Del	TCAAGCG	-	p.SSV1011fs
LIHC	TCGA-UB-A7MF-01	KANSL1	ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1,ENST00000576870.1,ENST00000573682.1,ENST00000572218.1	chr17	44109530:44109665:44110445:44110558:44110768:44110826,	44110446	44110558	44110522	44110526	Frame_Shift_Del	GCAGG	-	p.ALH919fs
LIHC	TCGA-UB-A7MF-01	B3GNTL1	ENST00000572977.1,ENST00000576599.1,ENST00000320865.3,ENST00000571394.1	chr17	80914570:80914645:80915056:80915125:80915234:80915370,	80915057	80915125	80915065	80915065	Frame_Shift_Del	C	-	p.D197fs
LUAD	TCGA-05-4244-01	CYB561A3	ENST00000294072.4,ENST00000537364.1,ENST00000447532.2	chr11	61121326:61121464:61124001:61124200:61125204:61125300,	61124002	61124200	61124041	61124059	Frame_Shift_Del	CTGGGTGCCAGTTGAACAT	-	p.MFNWHPV43fs
LUAD	TCGA-05-4249-01	PBLD	ENST00000432941.1,ENST00000358769.2,ENST00000495025.2,ENST00000309049.4,ENST00000336578.1	chr10	70045104:70045167:70048239:70048418:70048687:70048720,	70048240	70048418	70048359	70048375	Frame_Shift_Del	CCTGTGTTTTCAACTTG	-	p.QVENTG186fs
LUAD	TCGA-05-4249-01	COL5A3	ENST00000264828.3	chr19	10080024:10080078:10080250:10080358:10080544:10080598,	10080251	10080358	10080331	10080332	Frame_Shift_Ins	-	T	p.E1340fs
LUAD	TCGA-05-4250-01	GRM3	ENST00000536043.1,ENST00000361669.2	chr7	86415576:86416432:86468154:86469221:86479685:86479860,	86468155	86469221	86468581	86468581	Frame_Shift_Del	C	-	p.A584fs
LUAD	TCGA-05-4250-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459446	100459447	Frame_Shift_Ins	-	G	p.G542fs
LUAD	TCGA-05-4250-01	GARNL3	ENST00000373387.4,ENST00000373386.2,ENST00000435213.2,ENST00000478696.1,ENST00000314904.5	chr9	130117634:130117751:130119497:130119656:130127578:130127645,	130119498	130119656	130119519	130119519	Frame_Shift_Del	C	-	p.P653fs
LUAD	TCGA-05-4250-01	SKOR1	ENST00000554240.1	chr15	68115894:68115998:68118273:68120482:68121516:68121607,	68118274	68120482	68119430	68119430	Frame_Shift_Del	G	-	p.G422fs
LUAD	TCGA-05-4382-01	TNS1	ENST00000430930.1,ENST00000310858.6,ENST00000446903.1,ENST00000413554.1,ENST00000419504.1,ENST00000171887.4,ENST00000453356.1,ENST00000479185.1	chr2	218747068:218747134:218749757:218749887:218750466:218750533,	218749758	218749887	218749786	218749786	Frame_Shift_Del	C	-	p.G281fs
LUAD	TCGA-05-4382-01	COL25A1	ENST00000399132.1	chr4	109738552:109738591:109740407:109740485:109745329:109745375,	109740408	109740485	109740455	109740455	Frame_Shift_Del	C	-	p.E626fs
LUAD	TCGA-05-4382-01	DUSP1	ENST00000239223.3	chr5	172195996:172196135:172196577:172196797:172197163:172197309,	172196578	172196797	172196762	172196763	Frame_Shift_Ins	-	A	p.R183fs
LUAD	TCGA-05-4382-01	CYP11B1	ENST00000519285.1,ENST00000377675.3,ENST00000292427.4	chr8	143955884:143955902:143956372:143956570:143956649:143956728,	143956373	143956570	143956441	143956442	Frame_Shift_Ins	-	T	p.L444fs
LUAD	TCGA-05-4382-01	SOX6	ENST00000316399.6,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16077297:16077447:16117541:16117664:16119154:16119234,	16117542	16117664	16117639	16117640	Frame_Shift_Ins	-	T	p.*335fs
LUAD	TCGA-05-4382-01	HHIPL1	ENST00000357223.2	chr14	100111479:100111799:100118560:100119207:100123336:100123480,	100118561	100119207	100118789	100118790	Frame_Shift_Ins	-	T	p.G162fs
LUAD	TCGA-05-4382-01	PHLPP1	ENST00000400316.4,ENST00000262719.5	chr18	60587191:60587347:60608950:60609151:60612341:60612504,	60608951	60609151	60609095	60609095	Frame_Shift_Del	C	-	p.H523fs
LUAD	TCGA-05-4382-01	ITGB1BP2	ENST00000538820.1,ENST00000373829.3	chrX	70522126:70522183:70522260:70522406:70523111:70523206,	70522261	70522406	70522270	70522271	Frame_Shift_Ins	-	T	p.G43fs
LUAD	TCGA-05-4384-01	TTC7A	ENST00000394850.2,ENST00000409825.1,ENST00000491786.1,ENST00000409245.1,ENST00000441914.1,ENST00000461601.1,ENST00000484061.1,ENST00000319190.5,ENST00000263737.6	chr2	47222274:47222338:47233060:47233198:47233779:47233863,	47233061	47233198	47233194	47233195	Frame_Shift_Del	CG	-	p.S400fs
LUAD	TCGA-05-4384-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73676086	73676093	Frame_Shift_Del	ACTCACAC	-	p.YSH810fs
LUAD	TCGA-05-4384-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
LUAD	TCGA-05-4389-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278661	114278661	Frame_Shift_Del	A	-	p.T2963fs
LUAD	TCGA-05-4389-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46797804:46797933:46798988:46799102:46799688:46799863,	46798989	46799102	46799028	46799029	Frame_Shift_Ins	-	T	p.I941fs
LUAD	TCGA-05-4390-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525976	176525976	Frame_Shift_Del	C	-	p.T174fs
LUAD	TCGA-05-4390-01	NTRK2	ENST00000376208.1,ENST00000376213.1,ENST00000395866.2,ENST00000323115.4,ENST00000395882.1,ENST00000304053.6,ENST00000376214.1,ENST00000359847.3,ENST00000277120.3	chr9	87339138:87339271:87342568:87342874:87356806:87356842,	87342569	87342874	87342645	87342645	Frame_Shift_Del	C	-	p.N310fs
LUAD	TCGA-05-4390-01	MYOF	ENST00000359263.4,ENST00000371489.1,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95168543:95168672:95169329:95169496:95185827:95185915,	95169330	95169496	95169426	95169426	Frame_Shift_Del	C	-	p.G168fs
LUAD	TCGA-05-4390-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21392398:21392494:21555919:21556060:21581734:21581928,	21555920	21556060	21555993	21555993	Frame_Shift_Del	C	-	p.Y601fs
LUAD	TCGA-05-4390-01	PALB2	ENST00000565038.1,ENST00000261584.4,ENST00000568219.1	chr16	23635391:23635415:23637556:23637718:23640524:23640596,	23637557	23637718	23637683	23637683	Frame_Shift_Del	G	-	p.A874fs
LUAD	TCGA-05-4390-01	CD22	ENST00000270311.6,ENST00000598815.1,ENST00000419549.2,ENST00000085219.5,ENST00000536635.2,ENST00000594250.1,ENST00000341773.6,ENST00000544992.2,ENST00000601769.1	chr19	35832003:35832041:35832245:35832509:35832604:35832627,	35832246	35832509	35832490	35832499	Frame_Shift_Del	CTGGACACTT	-	p.AWTL584fs
LUAD	TCGA-05-4390-01	CD22	ENST00000594125.1	chr19	35832003:35832041:35832428:35832509:35832604:35832627,	35832429	35832509	35832490	35832499	Frame_Shift_Del	CTGGACACTT	-	p.AWTL584fs
LUAD	TCGA-05-4396-01	SNAP23	ENST00000566035.1,ENST00000563830.1,ENST00000249647.3,ENST00000568841.1,ENST00000568514.1,ENST00000563765.1,ENST00000566327.1	chr15	42807434:42807552:42820459:42820618:42821872:42822002,	42820460	42820618	42820530	42820530	Frame_Shift_Del	A	-	p.N113fs
LUAD	TCGA-05-4397-01	MYB	ENST00000525514.1,ENST00000533384.1,ENST00000528345.1,ENST00000525940.1,ENST00000529586.1,ENST00000526889.1,ENST00000525369.1,ENST00000526187.1,ENST00000531634.1,ENST00000534121.1,ENST00000524588.1,ENST00000528015.1,ENST00000531737.1,ENST00000533837.1,ENST00000442647.2,ENST00000529262.1,ENST00000531519.1,ENST00000526565.1,ENST00000528774.1,ENST00000438901.2,ENST00000339290.5,ENST00000463282.2,ENST00000341911.5,ENST00000527615.1,ENST00000533624.1,ENST00000367814.4,ENST00000531845.1,ENST00000528140.1,ENST00000525477.1,ENST00000533808.1,ENST00000526320.1	chr6	135521427:135521553:135522776:135522887:135524354:135524462,	135522777	135522887	135522779	135522779	Frame_Shift_Del	G	-	p.V651fs
LUAD	TCGA-05-4397-01	CARD14	ENST00000570421.1,ENST00000344227.2,ENST00000573882.1,ENST00000575500.1	chr17	78172264:78172390:78175542:78175669:78175978:78176219,	78175543	78175669	78175564	78175564	Frame_Shift_Del	C	-	p.P625fs
LUAD	TCGA-05-4397-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22804911	22804911	Frame_Shift_Del	G	-	p.R991fs
LUAD	TCGA-05-4397-01	TRAPPC6A	ENST00000588062.1,ENST00000585934.1,ENST00000006275.4,ENST00000592647.1	chr19	45667173:45667267:45667421:45667505:45668110:45668228,	45667422	45667505	45667459	45667460	Frame_Shift_Ins	-	T	p.G120fs
LUAD	TCGA-05-4398-01	GPSM2	ENST00000264126.3,ENST00000441735.1,ENST00000406462.2	chr1	109461234:109461411:109465038:109465198:109466621:109466836,	109465039	109465198	109465136	109465136	Frame_Shift_Del	A	-	p.E513fs
LUAD	TCGA-05-4398-01	FCRL5	ENST00000368191.3,ENST00000361835.3,ENST00000368190.3,ENST00000356953.4	chr1	157497406:157497685:157504403:157504682:157508875:157509154,	157504404	157504682	157504517	157504517	Frame_Shift_Del	C	-	p.G523fs
LUAD	TCGA-05-4398-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087055	109087056	Frame_Shift_Del	AG	-	p.R424fs
LUAD	TCGA-05-4398-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815951	82815966	Frame_Shift_Del	TAATTATGCCTGATAA	-	p.LIMPDN609fs
LUAD	TCGA-05-4398-01	GOPC	ENST00000052569.6	chr6	117894629:117894795:117896339:117896515:117900062:117900227,	117896340	117896515	117896421	117896421	Frame_Shift_Del	C	-	p.R191fs
LUAD	TCGA-05-4398-01	SERAC1	ENST00000607742.1,ENST00000607071.1	chr6	158569896:158569986:158571484:158571621:158579304:158579396,	158571485	158571621	158571537	158571537	Frame_Shift_Del	C	-	p.M71fs
LUAD	TCGA-05-4398-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91623934:91624090:91624916:91625114:91630161:91632549,	91624917	91625114	91625048	91625049	Frame_Shift_Ins	-	A	p.QK300fs
LUAD	TCGA-05-4398-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37728847	37728856	Frame_Shift_Del	GTCTCCGAGG	-	p.PSET1155fs
LUAD	TCGA-05-4398-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
LUAD	TCGA-05-4398-01	TCN2	ENST00000215838.3,ENST00000407817.3,ENST00000405742.3,ENST00000450638.1,ENST00000493542.1	chr22	31011702:31011774:31013316:31013482:31018954:31019070,	31013317	31013482	31013404	31013407	Frame_Shift_Del	ACAG	-	p.YR343fs
LUAD	TCGA-05-4405-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100771809:100771945:100773701:100773935:100775155:100775350,	100773702	100773935	100773778	100773779	Frame_Shift_Del	CA	-	p.TT116fs
LUAD	TCGA-05-4405-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000568431.1,ENST00000564778.1,ENST00000394949.4,ENST00000562776.1	chr15	75706627:75706652:75714987:75715164:75722527:75722749,	75714988	75715164	75715034	75715034	Frame_Shift_Del	G	-	p.P108fs
LUAD	TCGA-05-4410-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000542537.1	chr1	237756775:237756936:237758797:237758957:237765324:237765411,	237758798	237758957	237758850	237758850	Frame_Shift_Del	G	-	p.G1497fs
LUAD	TCGA-05-4410-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82580348	82580348	Frame_Shift_Del	T	-	p.T3186fs
LUAD	TCGA-05-4410-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000341723.4	chr7	92826797:92826923:92837892:92838189:92844713:92844998,	92837893	92838189	92837962	92837962	Frame_Shift_Del	A	-	p.C316fs
LUAD	TCGA-05-4410-01	DNAL1	ENST00000554871.1,ENST00000553645.2,ENST00000555919.3,ENST00000540526.1,ENST00000555631.2	chr14	74121549:74121588:74125549:74125659:74128689:74128745,	74125550	74125659	74125629	74125629	Frame_Shift_Del	A	-	p.D41fs
LUAD	TCGA-05-4410-01	PSG4	ENST00000433626.2,ENST00000599746.1	chr19	43698660:43698746:43699146:43699425:43702148:43702220,43698660:43698746:43699146:43699425:43708037:43708203,	43699147	43699425	43699272	43699272	Frame_Shift_Del	C	-	p.R288fs
LUAD	TCGA-05-4415-01	CD226	ENST00000579496.1,ENST00000582621.1,ENST00000280200.4,ENST00000583955.1	chr18	67563267:67563281:67613969:67614305:67614596:67614655,	67613970	67614305	67614136	67614136	Frame_Shift_Del	C	-	p.R72fs
LUAD	TCGA-05-4417-01	SFMBT1	ENST00000296295.6,ENST00000358080.2,ENST00000394752.3,ENST00000394750.1	chr3	52941570:52941749:52945018:52945194:52946553:52946663,	52945019	52945194	52945171	52945172	Frame_Shift_Ins	-	C	p.Y585fs
LUAD	TCGA-05-4417-01	MTPAP	ENST00000263063.4,ENST00000358107.4,ENST00000488290.1	chr10	30601938:30602900:30604891:30604965:30605046:30605139,	30604892	30604965	30604933	30604934	Frame_Shift_Ins	-	A	p.LQ578fs
LUAD	TCGA-05-4417-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635564	33635565	Frame_Shift_Ins	-	T	p.I783fs
LUAD	TCGA-05-4418-01	ITGA3	ENST00000544892.1,ENST00000506401.2,ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48148236:48148294:48148674:48148882:48149349:48149546,	48148675	48148882	48148712	48148713	Frame_Shift_Ins	-	A	p.PK263fs
LUAD	TCGA-05-4420-01	LCK	ENST00000333070.4,ENST00000469765.1,ENST00000469956.1,ENST00000336890.5	chr1	32741549:32741664:32741937:32742090:32742207:32742387,	32741938	32742090	32741968	32741969	Frame_Shift_Ins	-	A	p.T221fs
LUAD	TCGA-05-4420-01	UBE2D3	ENST00000505009.1,ENST00000502404.1,ENST00000508474.1,ENST00000504211.1,ENST00000338145.3,ENST00000505307.1,ENST00000343106.5,ENST00000507845.1,ENST00000505207.1,ENST00000394803.5,ENST00000510129.1,ENST00000508635.1,ENST00000349311.8,ENST00000394801.4,ENST00000350435.7,ENST00000453744.2,ENST00000321805.7,ENST00000357194.6,ENST00000394804.2	chr4	103720623:103720657:103722610:103722716:103723717:103723795,	103722611	103722716	103722680	103722681	Frame_Shift_Ins	-	A	p.Q79fs
LUAD	TCGA-05-4424-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000402291.1	chr2	61298792:61298927:61304054:61304293:61308586:61308645,61300592:61300686:61304054:61304293:61308586:61308645,	61304055	61304293	61304276	61304276	Frame_Shift_Del	G	-	p.C218fs
LUAD	TCGA-05-4424-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4737560	4737560	Frame_Shift_Del	T	-	p.S170fs
LUAD	TCGA-05-4424-01	TOM1L1	ENST00000540336.1,ENST00000571319.1	chr17	52978237:52978284:52990026:52990176:52991108:52991207,52982849:52982928:52990026:52990176:52991108:52991207,52981073:52981153:52990026:52990176:52991108:52991207,	52990027	52990176	52990037	52990038	Frame_Shift_Del	TG	-	p.M78fs
LUAD	TCGA-05-4424-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67303002	67303002	Frame_Shift_Del	G	-	p.R218fs
LUAD	TCGA-05-4426-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17764530	17764531	Frame_Shift_Del	CT	-	p.E1695fs
LUAD	TCGA-05-4427-01	PRSS1	ENST00000311737.7	chr7	142457331:142457375:142458405:142458565:142459624:142459634,	142458406	142458565	142458441	142458441	Frame_Shift_Del	G	-	p.G27fs
LUAD	TCGA-05-4427-01	TBX3	ENST00000257566.3	chr12	115117309:115117456:115117717:115117777:115118683:115118951,	115117718	115117777	115117764	115117764	Frame_Shift_Del	G	-	p.P224fs
LUAD	TCGA-05-4427-01	CIB2	ENST00000539011.1,ENST00000258930.3,ENST00000557846.1,ENST00000557818.1,ENST00000557917.1	chr15	78397640:78397674:78398080:78398276:78401576:78401721,	78398081	78398276	78398247	78398247	Frame_Shift_Del	C	-	p.E126fs
LUAD	TCGA-05-4430-01	GALNT15	ENST00000339732.5,ENST00000437509.1	chr3	16252630:16252748:16254075:16254270:16260909:16261041,	16254076	16254270	16254176	16254176	Frame_Shift_Del	C	-	p.T433fs
LUAD	TCGA-05-4430-01	RNF144B	ENST00000259939.3	chr6	18387744:18387861:18399729:18399930:18427811:18427916,	18399730	18399930	18399839	18399839	Frame_Shift_Del	C	-	p.A25fs
LUAD	TCGA-05-4432-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351938	156351938	Frame_Shift_Del	C	-	p.A321fs
LUAD	TCGA-05-4432-01	CDH11	ENST00000268603.4,ENST00000566827.1	chr16	64981449:64982002:64984669:64984921:65005481:65005599,	64984670	64984921	64984878	64984878	Frame_Shift_Del	C	-	p.R562fs
LUAD	TCGA-05-4432-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56204617	56204617	Frame_Shift_Del	G	-	p.P934fs
LUAD	TCGA-05-4433-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10633115:10633246:10637045:10637106:10639115:10639370,	10637046	10637106	10637059	10637060	Frame_Shift_Ins	-	GA	p.R248fs
LUAD	TCGA-05-4434-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71086990:71087094:71126137:71126310:71128894:71128999,	71126138	71126310	71126235	71126235	Frame_Shift_Del	A	-	p.F54fs
LUAD	TCGA-05-4434-01	PPP1CA	ENST00000376745.4,ENST00000358239.4,ENST00000312989.7,ENST00000532446.1,ENST00000526510.1	chr11	67166210:67166327:67166410:67166634:67168159:67168290,67166210:67166327:67166410:67166634:67167031:67167077,	67166411	67166634	67166623	67166623	Frame_Shift_Del	C	-	p.D179fs
LUAD	TCGA-05-5420-01	CTSV	ENST00000538255.1,ENST00000259470.5	chr9	99797809:99797975:99798804:99799029:99799533:99799680,	99798805	99799029	99798905	99798905	Frame_Shift_Del	C	-	p.G174fs
LUAD	TCGA-05-5425-01	FAM107B	ENST00000468747.1	chr10	14563943:14564018:14572330:14572514:14595320:14595386,14563943:14564018:14572330:14572514:14646238:14646269,	14572331	14572514	14572508	14572508	Frame_Shift_Del	G	-	p.P160fs
LUAD	TCGA-05-5425-01	TPP1	ENST00000533371.1,ENST00000428886.2,ENST00000436873.2,ENST00000530040.1,ENST00000299427.6	chr11	6638978:6639007:6640006:6640146:6640426:6640498,	6640007	6640146	6640051	6640052	Frame_Shift_Del	GA	-	p.S62fs
LUAD	TCGA-05-5425-01	TPP1	ENST00000528917.1	chr11	6638978:6639007:6640006:6640498:6640614:6640652,	6640007	6640498	6640051	6640052	Frame_Shift_Del	GA	-	p.S62fs
LUAD	TCGA-05-5428-01	CTNNA2	ENST00000466387.1,ENST00000496558.1,ENST00000402739.4,ENST00000541047.1,ENST00000361291.4,ENST00000540488.1	chr2	79971512:79971708:80085138:80085305:80096941:80097061,	80085139	80085305	80085218	80085218	Frame_Shift_Del	G	-	p.A127fs
LUAD	TCGA-05-5428-01	NFXL1	ENST00000464756.2,ENST00000381538.3,ENST00000507131.1,ENST00000507489.1,ENST00000329043.3	chr4	47886362:47886454:47887514:47887674:47887895:47888016,	47887515	47887674	47887580	47887581	Frame_Shift_Ins	-	A	p.LE586fs
LUAD	TCGA-05-5428-01	THOC3	ENST00000265097.4,ENST00000513482.1	chr5	175391953:175392158:175394113:175394270:175394944:175395271,	175394114	175394270	175394224	175394234	Frame_Shift_Del	AGCTGGTCCAC	-	p.VDQL102fs
LUAD	TCGA-05-5429-01	KLHL21	ENST00000377658.4,ENST00000467612.1,ENST00000496707.1	chr1	6653440:6653718:6655544:6655617:6659106:6659512,	6655545	6655617	6655560	6655561	Frame_Shift_Ins	-	A	p.T495fs
LUAD	TCGA-05-5715-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789333	150789333	Frame_Shift_Del	G	-	p.P578fs
LUAD	TCGA-05-5715-01	UBQLN1	ENST00000257468.7	chr9	86278789:86278958:86279944:86280060:86284099:86284206,	86279945	86280060	86279969	86279970	Frame_Shift_Ins	-	T	p.G475fs
LUAD	TCGA-05-5715-01	KMT2A	ENST00000389506.5,ENST00000354520.4,ENST00000534358.1	chr11	118362458:118362643:118363771:118363945:118365002:118365113,	118363772	118363945	118363894	118363894	Frame_Shift_Del	A	-	p.L1709fs
LUAD	TCGA-17-Z000-01	TNRC6A	ENST00000491718.1,ENST00000568903.1,ENST00000315183.7,ENST00000395799.3	chr16	24803010:24803138:24804793:24804970:24805864:24806040,	24804794	24804970	24804889	24804890	Frame_Shift_Ins	-	G	p.G1091fs
LUAD	TCGA-17-Z001-01	STPG1	ENST00000497384.1,ENST00000337248.4,ENST00000374409.1	chr1	24710391:24710493:24718050:24718169:24727808:24727821,	24718051	24718169	24718090	24718090	Frame_Shift_Del	T	-	p.K50fs
LUAD	TCGA-17-Z001-01	USP33	ENST00000370793.1,ENST00000370792.3,ENST00000370794.3,ENST00000524536.1,ENST00000357428.1	chr1	78201740:78201843:78204949:78205102:78206561:78206619,	78204950	78205102	78204952	78204952	Frame_Shift_Del	G	-	p.Q148fs
LUAD	TCGA-17-Z001-01	GABRB3	ENST00000541819.2,ENST00000311550.5,ENST00000299267.4	chr15	26828478:26828561:26866460:26866681:27017548:27017616,	26866461	26866681	26866529	26866530	Frame_Shift_Ins	-	A	p.A187fs
LUAD	TCGA-17-Z003-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187542211	187542211	Frame_Shift_Del	A	-	p.F1843fs
LUAD	TCGA-17-Z004-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8229060	8229061	Frame_Shift_Ins	-	G	p.G471fs
LUAD	TCGA-17-Z005-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425145	59425146	Frame_Shift_Ins	-	G	p.G160fs
LUAD	TCGA-17-Z009-01	TJP2	ENST00000348208.4,ENST00000265384.7,ENST00000539225.1,ENST00000535702.1,ENST00000453658.2,ENST00000377245.4	chr9	71833172:71833275:71835802:71836412:71840219:71840323,	71835803	71836412	71835952	71835953	Frame_Shift_Ins	-	G	p.QG164fs
LUAD	TCGA-17-Z009-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	120973374:120973438:120976539:120976673:120979919:120980207,	120976540	120976673	120976570	120976570	Frame_Shift_Del	G	-	p.W32fs
LUAD	TCGA-17-Z010-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722672:722805:723240:723353:724723:724829,	723241	723353	723304	723305	Frame_Shift_Ins	-	C	p.P469fs
LUAD	TCGA-17-Z010-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451547	55451547	Frame_Shift_Del	C	-	p.E214fs
LUAD	TCGA-17-Z011-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LUAD	TCGA-17-Z011-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LUAD	TCGA-17-Z011-01	GRIK1	ENST00000399909.1,ENST00000399914.1,ENST00000389125.3,ENST00000327783.4,ENST00000399907.1,ENST00000389124.2,ENST00000309434.7,ENST00000399913.1,ENST00000535441.1	chr21	30949283:30949501:30953744:30953863:30959685:30959909,	30953745	30953863	30953835	30953835	Frame_Shift_Del	G	-	p.H593fs
LUAD	TCGA-17-Z013-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091465	204091466	Frame_Shift_Ins	-	C	p.P321fs
LUAD	TCGA-17-Z013-01	EPS8	ENST00000543363.1,ENST00000543523.1,ENST00000543468.1,ENST00000536793.1,ENST00000546311.1,ENST00000543612.1,ENST00000535752.1,ENST00000281172.5,ENST00000544064.1	chr12	15823792:15823857:15834159:15834236:15835826:15835906,	15834160	15834236	15834162	15834163	Frame_Shift_Ins	-	A	p.*45fs
LUAD	TCGA-17-Z014-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561840	145561841	Frame_Shift_Ins	-	G	p.G510fs
LUAD	TCGA-17-Z014-01	ST3GAL6	ENST00000462152.1	chr3	98451222:98451376:98491656:98491760:98503788:98503820,	98491657	98491760	98491720	98491720	Frame_Shift_Del	T	-	p.G77fs
LUAD	TCGA-17-Z014-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
LUAD	TCGA-17-Z014-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
LUAD	TCGA-17-Z014-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
LUAD	TCGA-17-Z015-01	TAL1	ENST00000371884.2,ENST00000294339.3	chr1	47689743:47689770:47691114:47691561:47694867:47695023,	47691115	47691561	47691474	47691475	Frame_Shift_Ins	-	G	p.P29fs
LUAD	TCGA-17-Z015-01	TPM3	ENST00000368530.2,ENST00000271850.7	chr1	154145559:154145677:154148590:154148724:154155463:154155554,154145559:154145677:154148590:154148724:154163661:154163787,	154148591	154148724	154148630	154148630	Frame_Shift_Del	T	-	p.K76fs
LUAD	TCGA-17-Z015-01	TPM3	ENST00000312970.8	chr1	154145559:154145677:154148590:154148655:154155463:154155554,	154148591	154148655	154148630	154148630	Frame_Shift_Del	T	-	p.K76fs
LUAD	TCGA-17-Z015-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.K147fs
LUAD	TCGA-17-Z015-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.K147fs
LUAD	TCGA-17-Z015-01	STEAP1	ENST00000297205.2,ENST00000475789.1	chr7	89789071:89789186:89790118:89790631:89791227:89791392,	89790119	89790631	89790221	89790222	Frame_Shift_Del	CA	-	p.H63fs
LUAD	TCGA-17-Z017-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000443875.1,ENST00000402681.3,ENST00000541647.1	chr12	7170193:7170371:7171570:7171696:7172403:7172482,	7171571	7171696	7171652	7171653	Frame_Shift_Ins	-	C	p.S158fs
LUAD	TCGA-17-Z017-01	DPEP2	ENST00000268795.5	chr16	68026075:68026096:68026852:68027160:68034350:68034467,	68026853	68027160	68026995	68026996	Frame_Shift_Ins	-	G	p.S41fs
LUAD	TCGA-17-Z017-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629104	18629105	Frame_Shift_Ins	-	A	p.L121fs
LUAD	TCGA-17-Z018-01	EPAS1	ENST00000449347.1,ENST00000263734.3	chr2	46524902:46525076:46574011:46574202:46583289:46583432,	46574012	46574202	46574181	46574182	Frame_Shift_Del	AC	-	p.T66fs
LUAD	TCGA-17-Z018-01	TBKBP1	ENST00000361722.3	chr17	45775960:45776141:45776685:45776861:45777001:45777063,	45776686	45776861	45776772	45776773	Frame_Shift_Ins	-	G	p.G241fs
LUAD	TCGA-17-Z018-01	ST8SIA5	ENST00000590497.1,ENST00000588155.1,ENST00000538168.1	chr18	44272131:44272218:44284534:44284627:44301324:44301432,	44284535	44284627	44284556	44284571	Frame_Shift_Del	AATATTTCGTGCCTCA	-	p.LRHEIL63fs
LUAD	TCGA-17-Z019-01	TARBP2	ENST00000547064.1	chr12	53895843:53895968:53896810:53896913:53897513:53897592,53895843:53895968:53896810:53896913:53897496:53897592,53895402:53895492:53896810:53896913:53897496:53897592,53895149:53895245:53896810:53896913:53897496:53897592,	53896811	53896913	53896875	53896876	Frame_Shift_Ins	-	G	p.KG96fs
LUAD	TCGA-17-Z019-01	TARBP2	ENST00000548971.1	chr12	53895843:53895968:53896810:53896996:53897513:53897592,53895843:53895968:53896810:53896996:53897496:53897592,	53896811	53896996	53896875	53896876	Frame_Shift_Ins	-	G	p.KG96fs
LUAD	TCGA-17-Z021-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47570301:47570439:47571471:47571651:47571805:47571894,	47571472	47571651	47571576	47571576	Frame_Shift_Del	C	-	p.A178fs
LUAD	TCGA-17-Z022-01	TFDP2	ENST00000487734.1,ENST00000499676.2,ENST00000492919.1,ENST00000397991.4,ENST00000489671.1,ENST00000467072.1,ENST00000478006.1,ENST00000479040.1,ENST00000497579.1,ENST00000486111.1,ENST00000488107.2,ENST00000310282.6,ENST00000467667.1	chr3	141697429:141697524:141712379:141712427:141724282:141724311,141697429:141697524:141712379:141712427:141713861:141713983,	141712380	141712427	141712394	141712395	Frame_Shift_Del	AG	-	p.S53fs
LUAD	TCGA-17-Z022-01	ZNF451	ENST00000491832.2,ENST00000370706.4	chr6	57011887:57013491:57015516:57015660:57017018:57017149,	57015517	57015660	57015568	57015571	Frame_Shift_Del	ATAT	-	p.HI887fs
LUAD	TCGA-17-Z022-01	ODF2	ENST00000421776.2,ENST00000393533.2,ENST00000448249.3,ENST00000604420.1,ENST00000372791.3,ENST00000546203.1,ENST00000434106.3,ENST00000444119.2,ENST00000393527.3,ENST00000372814.3,ENST00000351030.3,ENST00000372807.5	chr9	131245094:131245166:131246216:131246333:131246979:131247165,	131246217	131246333	131246315	131246315	Frame_Shift_Del	C	-	p.R338fs
LUAD	TCGA-17-Z023-01	FOXK1	ENST00000328914.4	chr7	4721939:4722499:4780468:4780654:4794089:4794246,	4780469	4780654	4780475	4780476	Frame_Shift_Ins	-	T	p.P190fs
LUAD	TCGA-17-Z023-01	RSPH10B2	ENST00000463354.2	chr7	6820958:6821107:6825579:6825687:6829261:6829390,	6825580	6825687	6825592	6825595	Frame_Shift_Del	ATAA	-	p.IN591fs
LUAD	TCGA-17-Z023-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971024	21971024	Frame_Shift_Del	G	-	p.P126fs
LUAD	TCGA-17-Z023-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971024	21971024	Frame_Shift_Del	G	-	p.P126fs
LUAD	TCGA-17-Z023-01	LSP1	ENST00000406638.2,ENST00000421485.1,ENST00000451814.1,ENST00000432093.1,ENST00000405957.2,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1892581:1892642:1902661:1902826:1904648:1904658,1901316:1901454:1902661:1902826:1904648:1904658,	1902662	1902826	1902785	1902786	Frame_Shift_Ins	-	C	p.DP43fs
LUAD	TCGA-17-Z023-01	LGR5	ENST00000540815.2,ENST00000536515.1,ENST00000266674.5,ENST00000550851.1	chr12	71898393:71898465:71918185:71918257:71928894:71928966,	71918186	71918257	71918213	71918226	Frame_Shift_Del	CATTCCCAAGGGAG	-	p.YIPKGA104fs
LUAD	TCGA-17-Z023-01	NAV3	ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78513016:78513725:78515719:78516208:78520946:78520988,	78515720	78516208	78516143	78516153	Frame_Shift_Del	AGGCACTCACG	-	p.TGTHE1391fs
LUAD	TCGA-17-Z023-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276860	15276861	Frame_Shift_Ins	-	C	p.S1802fs
LUAD	TCGA-17-Z023-01	PSMF1	ENST00000246015.4,ENST00000479715.1,ENST00000381898.4,ENST00000333082.3,ENST00000335877.6	chr20	1108068:1108151:1115763:1115949:1143773:1143827,	1115764	1115949	1115871	1115872	Frame_Shift_Ins	-	C	p.S158fs
LUAD	TCGA-17-Z025-01	PLEKHA7	ENST00000355661.3,ENST00000528376.1,ENST00000531066.1,ENST00000448080.2	chr11	16873829:16873902:16876435:16876540:16877349:16877461,	16876436	16876540	16876505	16876505	Frame_Shift_Del	C	-	p.G151fs
LUAD	TCGA-17-Z025-01	PAMR1	ENST00000534803.1,ENST00000532848.1,ENST00000527605.1,ENST00000378880.2,ENST00000278360.3	chr11	35489548:35489656:35492148:35492366:35496177:35496292,	35492149	35492366	35492305	35492305	Frame_Shift_Del	C	-	p.D186fs
LUAD	TCGA-17-Z026-01	GALNT2	ENST00000541865.1	chr1	230386202:230386306:230390963:230391090:230398318:230398411,230384929:230385017:230390963:230391090:230398318:230398411,	230390964	230391090	230391037	230391037	Frame_Shift_Del	C	-	p.F361fs
LUAD	TCGA-17-Z026-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835163	82835164	Frame_Shift_Ins	-	A	p.N2114fs
LUAD	TCGA-17-Z026-01	CREB5	ENST00000409603.1,ENST00000396298.2,ENST00000396299.2,ENST00000396300.2,ENST00000357727.2	chr7	28843815:28844139:28848803:28849031:28857687:28857796,	28848804	28849031	28849029	28849029	Frame_Shift_Del	C	-	p.Q418fs
LUAD	TCGA-17-Z026-01	LOXHD1	ENST00000579038.1,ENST00000335730.2,ENST00000300591.6,ENST00000398722.4,ENST00000441551.2,ENST00000536736.1,ENST00000441893.2,ENST00000582408.1	chr18	44104670:44104880:44109139:44109294:44113124:44113287,	44109140	44109294	44109233	44109234	Frame_Shift_Ins	-	T	p.S1479fs
LUAD	TCGA-17-Z027-01	TROVE2	ENST00000367445.3,ENST00000367444.3,ENST00000416058.2,ENST00000367446.3,ENST00000367443.1	chr1	193029186:193029352:193038163:193038764:193044949:193045020,	193038164	193038764	193038460	193038461	Frame_Shift_Ins	-	CTCT	p.L93fs
LUAD	TCGA-17-Z027-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965335	123965336	Frame_Shift_Ins	-	C	p.P529fs
LUAD	TCGA-17-Z028-01	PRCC	ENST00000271526.4,ENST00000491853.1	chr1	156752077:156752121:156756399:156756966:156764456:156764596,156752077:156752121:156756399:156756966:156761488:156761584,	156756400	156756966	156756484	156756484	Frame_Shift_Del	C	-	p.P201fs
LUAD	TCGA-17-Z028-01	DYSF	ENST00000409582.3,ENST00000409762.1,ENST00000409651.1,ENST00000413539.2,ENST00000410041.1,ENST00000410020.3	chr2	71738936:71739051:71740369:71740462:71740845:71741051,	71740370	71740462	71740450	71740450	Frame_Shift_Del	C	-	p.P180fs
LUAD	TCGA-17-Z028-01	STAT3	ENST00000585517.1,ENST00000264657.5,ENST00000404395.3,ENST00000389272.3,ENST00000588969.1	chr17	40481427:40481475:40481571:40481665:40481764:40481794,	40481572	40481665	40481632	40481633	Frame_Shift_Del	TG	-	p.T391fs
LUAD	TCGA-17-Z030-01	PKP4	ENST00000421462.1,ENST00000426248.3	chr2	159477742:159477933:159481466:159481939:159488264:159488444,	159481467	159481939	159481557	159481557	Frame_Shift_Del	C	-	p.N257fs
LUAD	TCGA-17-Z030-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1	chr2	159477742:159477933:159481389:159481939:159488264:159488444,	159481390	159481939	159481557	159481557	Frame_Shift_Del	C	-	p.N257fs
LUAD	TCGA-17-Z030-01	RHBDD1	ENST00000392062.2,ENST00000341329.3,ENST00000491490.1,ENST00000493526.1	chr2	227773537:227773594:227778923:227779067:227860146:227860391,	227778924	227779067	227778956	227778956	Frame_Shift_Del	G	-	p.G249fs
LUAD	TCGA-17-Z030-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107955839	107955840	Frame_Shift_Ins	-	C	p.SP597fs
LUAD	TCGA-17-Z030-01	COBL	ENST00000265136.7,ENST00000441453.1,ENST00000395540.2,ENST00000452534.1	chr7	51152862:51153001:51203854:51204028:51251798:51251896,	51203855	51204028	51203955	51203955	Frame_Shift_Del	C	-	p.G311fs
LUAD	TCGA-17-Z030-01	EMC10	ENST00000601780.1,ENST00000376918.3	chr19	50984140:50984234:50985117:50985204:50985405:50985419,	50985118	50985204	50985131	50985132	Frame_Shift_Ins	-	G	p.R231fs
LUAD	TCGA-17-Z030-01	ITCH	ENST00000483727.1,ENST00000374864.4,ENST00000535650.1,ENST00000262650.6	chr20	33045194:33045279:33049897:33050026:33057852:33057925,	33049898	33050026	33050003	33050004	Frame_Shift_Ins	-	C	p.DP467fs
LUAD	TCGA-17-Z031-01	GALNT2	ENST00000543760.1,ENST00000541865.1,ENST00000366672.4	chr1	230372405:230372471:230379051:230379173:230381808:230381896,	230379052	230379173	230379072	230379073	Frame_Shift_Ins	-	G	p.G210fs
LUAD	TCGA-17-Z031-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000542537.1	chr1	237991680:237991745:237993829:237993930:237994813:237994865,	237993830	237993930	237993907	237993907	Frame_Shift_Del	G	-	p.Q4911fs
LUAD	TCGA-17-Z031-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126710226:126710409:126722172:126722313:126723453:126723554,	126722173	126722313	126722193	126722193	Frame_Shift_Del	C	-	p.N443fs
LUAD	TCGA-17-Z031-01	DDX60L	ENST00000511577.1,ENST00000260184.7	chr4	169294816:169294959:169296527:169296675:169299504:169299626,	169296528	169296675	169296600	169296600	Frame_Shift_Del	C	-	p.A1521fs
LUAD	TCGA-17-Z031-01	DPYS	ENST00000351513.2	chr8	105391718:105392071:105393411:105393542:105405011:105405084,	105393412	105393542	105393457	105393457	Frame_Shift_Del	G	-	p.T510fs
LUAD	TCGA-17-Z031-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282886	47282887	Frame_Shift_Ins	-	C	p.SP198fs
LUAD	TCGA-17-Z031-01	STX3	ENST00000530221.1	chr11	59562887:59562955:59564755:59564869:59568327:59568435,59560951:59560987:59564755:59564869:59568327:59568435,59562844:59562955:59564755:59564869:59567147:59567420,	59564756	59564869	59564806	59564807	Frame_Shift_Ins	-	T	p.D243fs
LUAD	TCGA-17-Z031-01	NXF1	ENST00000294172.2,ENST00000530875.1,ENST00000531709.2,ENST00000533671.1,ENST00000532297.1,ENST00000439713.2	chr11	62569648:62569732:62570890:62571044:62571263:62571450,	62570891	62571044	62571028	62571028	Frame_Shift_Del	G	-	p.R78fs
LUAD	TCGA-17-Z031-01	SERPINH1	ENST00000358171.3	chr11	75273297:75273364:75277360:75278016:75279775:75279874,	75277361	75278016	75277761	75277762	Frame_Shift_Del	GC	-	p.A123fs
LUAD	TCGA-17-Z031-01	IQSEC3	ENST00000538872.1,ENST00000326261.4	chr12	208311:208380:234798:235078:247432:248520,	234799	235078	234956	234968	Frame_Shift_Del	AGGGCTGGCCCCC	-	p.RAGPQ261fs
LUAD	TCGA-17-Z031-01	TESPA1	ENST00000525978.1,ENST00000449076.1,ENST00000532757.1,ENST00000316577.8,ENST00000532804.1,ENST00000526532.1,ENST00000524622.1,ENST00000524923.1,ENST00000533446.1,ENST00000531122.1	chr12	55357642:55357734:55359836:55359935:55360171:55360208,	55359837	55359935	55359857	55359857	Frame_Shift_Del	C	-	p.G4fs
LUAD	TCGA-17-Z031-01	ZCCHC8	ENST00000540586.1,ENST00000543897.1	chr12	122967181:122967242:122967825:122968110:122973932:122974010,	122967826	122968110	122968060	122968060	Frame_Shift_Del	C	-	p.G184fs
LUAD	TCGA-17-Z031-01	ZCCHC8	ENST00000336229.4	chr12	122967825:122967891:122968006:122968110:122973932:122974010,	122968007	122968110	122968060	122968060	Frame_Shift_Del	C	-	p.G184fs
LUAD	TCGA-17-Z031-01	TM6SF2	ENST00000389363.4	chr19	19380495:19380578:19380981:19381085:19381153:19381251,	19380982	19381085	19381037	19381037	Frame_Shift_Del	C	-	p.D116fs
LUAD	TCGA-17-Z031-01	FXYD5	ENST00000588699.1	chr19	35657044:35657074:35657153:35657331:35660468:35660536,	35657154	35657331	35657248	35657248	Frame_Shift_Del	G	-	p.V169fs
LUAD	TCGA-17-Z031-01	HDAC6	ENST00000334136.5,ENST00000376619.2,ENST00000444343.2,ENST00000477528.1,ENST00000486665.1,ENST00000486227.1	chrX	48676477:48676516:48676626:48676819:48678512:48678587,	48676627	48676819	48676754	48676754	Frame_Shift_Del	C	-	p.P708fs
LUAD	TCGA-17-Z032-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6	chr2	84744946:84745175:84752688:84752862:84756027:84756290,	84752689	84752862	84752795	84752796	Frame_Shift_Ins	-	A	p.E111fs
LUAD	TCGA-17-Z032-01	GPC2	ENST00000490629.1	chr7	99769273:99769301:99769401:99769582:99769709:99769840,	99769402	99769582	99769524	99769525	Frame_Shift_Ins	-	G	p.P350fs
LUAD	TCGA-17-Z032-01	GPC2	ENST00000486702.1,ENST00000471050.1,ENST00000292377.2	chr7	99769273:99769301:99769401:99769548:99769709:99769840,	99769402	99769548	99769524	99769525	Frame_Shift_Ins	-	G	p.P350fs
LUAD	TCGA-17-Z033-01	GPC2	ENST00000490629.1	chr7	99769273:99769301:99769401:99769582:99769709:99769840,	99769402	99769582	99769524	99769525	Frame_Shift_Ins	-	G	p.P350fs
LUAD	TCGA-17-Z033-01	GPC2	ENST00000486702.1,ENST00000471050.1,ENST00000292377.2	chr7	99769273:99769301:99769401:99769548:99769709:99769840,	99769402	99769548	99769524	99769525	Frame_Shift_Ins	-	G	p.P350fs
LUAD	TCGA-17-Z033-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906659	103906660	Frame_Shift_Ins	-	C	p.P1304fs
LUAD	TCGA-17-Z033-01	SIGLEC8	ENST00000321424.3	chr19	51960437:51960485:51960714:51960993:51961187:51961706,	51960715	51960993	51960886	51960887	Frame_Shift_Ins	-	G	p.D188fs
LUAD	TCGA-17-Z033-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67942263:67942488:67943467:67943685:67943786:67943963,	67943468	67943685	67943519	67943520	Frame_Shift_Ins	-	C	p.P871fs
LUAD	TCGA-17-Z036-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600356	10600356	Frame_Shift_Del	A	-	p.I500fs
LUAD	TCGA-17-Z036-01	HSPBP1	ENST00000585927.1	chr19	55785839:55785990:55789009:55789148:55790766:55791070,	55789010	55789148	55789106	55789107	Frame_Shift_Ins	-	G	p.C107fs
LUAD	TCGA-17-Z036-01	HSPBP1	ENST00000376343.3,ENST00000587922.1,ENST00000433386.2,ENST00000593263.1,ENST00000255631.5	chr19	55785839:55785990:55789009:55789214:55790766:55791070,	55789010	55789214	55789106	55789107	Frame_Shift_Ins	-	G	p.C107fs
LUAD	TCGA-17-Z037-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186665039	186665039	Frame_Shift_Del	A	-	p.Q3758fs
LUAD	TCGA-17-Z041-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261078	151261079	Frame_Shift_Ins	-	C	p.RP730fs
LUAD	TCGA-17-Z041-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855926	100855927	Frame_Shift_Ins	-	G	p.G297fs
LUAD	TCGA-17-Z041-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.Q1005fs
LUAD	TCGA-17-Z041-01	USP36	ENST00000588086.1,ENST00000312010.6,ENST00000542802.3,ENST00000589225.1	chr17	76798542:76798617:76799466:76800060:76802237:76802368,	76799467	76800060	76799860	76799861	Frame_Shift_Ins	-	G	p.E806fs
LUAD	TCGA-17-Z041-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56201232:56201316:56203119:56203423:56204051:56204162,	56203120	56203423	56203183	56203184	Frame_Shift_Ins	-	G	p.G362fs
LUAD	TCGA-17-Z042-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
LUAD	TCGA-17-Z042-01	CYP39A1	ENST00000275016.2	chr6	46605565:46605715:46607230:46607405:46609899:46610035,	46607231	46607405	46607308	46607308	Frame_Shift_Del	C	-	p.G137fs
LUAD	TCGA-17-Z042-01	MED15	ENST00000489651.1,ENST00000263205.7	chr22	20922852:20922918:20936897:20937034:20937126:20937254,20929399:20929519:20936897:20937034:20937126:20937254,	20936898	20937034	20936975	20936976	Frame_Shift_Ins	-	C	p.PP450fs
LUAD	TCGA-17-Z042-01	USP9Y	ENST00000426564.2,ENST00000338981.3	chrY	14958969:14959078:14959163:14959252:14968264:14968371,	14959164	14959252	14959240	14959240	Frame_Shift_Del	G	-	p.W2351fs
LUAD	TCGA-17-Z043-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487780	14487781	Frame_Shift_Ins	-	C	p.P2348fs
LUAD	TCGA-17-Z043-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487780	14487781	Frame_Shift_Ins	-	C	p.P2348fs
LUAD	TCGA-17-Z043-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579582	7579583	Frame_Shift_Ins	-	A	p.S35fs
LUAD	TCGA-17-Z043-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433320:10433415:10433820:10433950:10434050:10434242,	10433821	10433950	10433827	10433828	Frame_Shift_Ins	-	C	p.A375fs
LUAD	TCGA-17-Z043-01	EMD	ENST00000468294.1,ENST00000486738.1,ENST00000494443.1	chrX	153607884:153607926:153608049:153608154:153608301:153608379,	153608050	153608154	153608114	153608115	Frame_Shift_Ins	-	C	p.SP49fs
LUAD	TCGA-17-Z044-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
LUAD	TCGA-17-Z044-01	POMP	ENST00000380842.4,ENST00000460403.1	chr13	29236546:29236644:29238645:29238706:29242609:29242711,	29238646	29238706	29238702	29238703	Frame_Shift_Ins	-	G	p.K53fs
LUAD	TCGA-17-Z044-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631504	Frame_Shift_Del	TT	-	p.I278fs
LUAD	TCGA-17-Z045-01	SSBP3	ENST00000533946.1,ENST00000371319.3,ENST00000525990.1	chr1	54722799:54722859:54747110:54747200:54867533:54867618,	54747111	54747200	54747155	54747156	Frame_Shift_Ins	-	G	p.R108fs
LUAD	TCGA-17-Z045-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32041423:32041729:32046809:32047142:32049144:32049450,	32046810	32047142	32047089	32047089	Frame_Shift_Del	C	-	p.A1366fs
LUAD	TCGA-17-Z045-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61769092:61769222:61769601:61769779:61770908:61771224,	61769602	61769779	61769652	61769652	Frame_Shift_Del	G	-	p.G540fs
LUAD	TCGA-17-Z045-01	ZBTB46	ENST00000245663.4,ENST00000395104.1,ENST00000302995.2	chr20	62384038:62384214:62407030:62407315:62421173:62421212,	62407031	62407315	62407137	62407138	Frame_Shift_Del	CG	-	p.A373fs
LUAD	TCGA-17-Z047-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.IP160fs
LUAD	TCGA-17-Z047-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255497	156255498	Frame_Shift_Ins	-	C	p.IP160fs
LUAD	TCGA-17-Z047-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.IP160fs
LUAD	TCGA-17-Z047-01	COPA	ENST00000368069.3,ENST00000545284.1,ENST00000241704.7	chr1	160267345:160267535:160268634:160268781:160268891:160269054,	160268635	160268781	160268683	160268689	Frame_Shift_Del	CTTGACA	-	p.FVK641fs
LUAD	TCGA-17-Z047-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658017	27658018	Frame_Shift_Ins	-	C	p.A195fs
LUAD	TCGA-17-Z049-01	MATN2	ENST00000521689.1,ENST00000254898.5,ENST00000520016.1,ENST00000523490.1,ENST00000524308.1	chr8	98900302:98900470:98943180:98943750:98954004:98954127,	98943181	98943750	98943445	98943446	Frame_Shift_Ins	-	T	p.R136fs
LUAD	TCGA-17-Z049-01	PDE3B	ENST00000282096.4,ENST00000455098.2	chr11	14856527:14856641:14865372:14865572:14880588:14880792,	14865373	14865572	14865565	14865565	Frame_Shift_Del	C	-	p.A838fs
LUAD	TCGA-17-Z050-01	LMAN1L	ENST00000379709.3,ENST00000470711.2,ENST00000309664.5,ENST00000562810.1	chr15	75108497:75108652:75108767:75108875:75108972:75108993,	75108768	75108875	75108812	75108813	Frame_Shift_Ins	-	G	p.LG125fs
LUAD	TCGA-17-Z051-01	ZDHHC6	ENST00000369404.3,ENST00000369405.3	chr10	114192997:114193039:114194054:114194222:114198093:114198147,	114194055	114194222	114194168	114194168	Frame_Shift_Del	C	-	p.D264fs
LUAD	TCGA-17-Z052-01	LGI4	ENST00000310123.3,ENST00000493050.1	chr19	35615569:35616411:35617173:35617679:35617756:35617921,	35617174	35617679	35617603	35617604	Frame_Shift_Ins	-	C	p.S316fs
LUAD	TCGA-17-Z053-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876724	27876725	Frame_Shift_Ins	-	T	p.PP634fs
LUAD	TCGA-17-Z053-01	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49049577	49049578	Frame_Shift_Ins	-	G	p.N234fs
LUAD	TCGA-17-Z053-01	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49049577	49049578	Frame_Shift_Ins	-	G	p.N234fs
LUAD	TCGA-17-Z053-01	KALRN	ENST00000454902.1,ENST00000428018.2,ENST00000393496.1	chr3	124351266:124351550:124352695:124352800:124369654:124369762,	124352696	124352800	124352712	124352712	Frame_Shift_Del	G	-	p.W1826fs
LUAD	TCGA-17-Z053-01	SPRED3	ENST00000586301.1,ENST00000587013.1,ENST00000338502.4	chr19	38882851:38882928:38885282:38885426:38886119:38886788,	38885283	38885426	38885396	38885397	Frame_Shift_Ins	-	C	p.TP223fs
LUAD	TCGA-17-Z055-01	HSD11B1	ENST00000261465.1	chr1	209859549:209859630:209878261:209878375:209879155:209879286,	209878262	209878375	209878313	209878314	Frame_Shift_Ins	-	C	p.P9fs
LUAD	TCGA-17-Z055-01	TTC27	ENST00000428527.1,ENST00000317907.4	chr2	33012050:33012216:33036090:33036288:33037570:33037682,	33036091	33036288	33036200	33036200	Frame_Shift_Del	C	-	p.S703fs
LUAD	TCGA-17-Z055-01	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000450950.2	chr3	193180550:193180612:193182728:193182917:193183813:193183971,	193182729	193182917	193182776	193182776	Frame_Shift_Del	G	-	p.Q472fs
LUAD	TCGA-17-Z055-01	SNX25	ENST00000512853.1	chr4	186272598:186272763:186274638:186274756:186278824:186278891,186267690:186267804:186274638:186274756:186278824:186278891,	186274639	186274756	186274647	186274648	Frame_Shift_Del	AG	-	p.TE661fs
LUAD	TCGA-17-Z055-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094352	143094352	Frame_Shift_Del	A	-	p.I508fs
LUAD	TCGA-17-Z055-01	DGKB	ENST00000399322.3,ENST00000471732.1,ENST00000258767.5,ENST00000403963.1,ENST00000406247.3,ENST00000444700.2,ENST00000407950.1,ENST00000402815.1,ENST00000403951.2	chr7	14622676:14622762:14647058:14647133:14652964:14653038,	14647059	14647133	14647102	14647103	Frame_Shift_Ins	-	A	p.S465fs
LUAD	TCGA-17-Z055-01	STX5	ENST00000491231.1,ENST00000294179.3	chr11	62595048:62595103:62598490:62598734:62599425:62599503,	62598491	62598734	62598584	62598585	Frame_Shift_Ins	-	G	p.R44fs
LUAD	TCGA-17-Z055-01	MED25	ENST00000312865.6	chr19	50333078:50333205:50333344:50333475:50333767:50333855,	50333345	50333475	50333382	50333383	Frame_Shift_Ins	-	C	p.KA242fs
LUAD	TCGA-17-Z056-01	CD244	ENST00000368034.4,ENST00000368033.3,ENST00000368032.2,ENST00000322302.7,ENST00000492063.1	chr1	160803840:160803906:160805984:160806044:160808240:160808308,	160805985	160806044	160806015	160806015	Frame_Shift_Del	C	-	p.G288fs
LUAD	TCGA-17-Z056-01	IFRD2	ENST00000483071.1,ENST00000429673.2,ENST00000336089.4,ENST00000436390.1,ENST00000474556.1,ENST00000417626.2	chr3	50326685:50326787:50326877:50327059:50327142:50327193,50326685:50326791:50326877:50327059:50327142:50327193,	50326878	50327059	50326997	50326998	Frame_Shift_Ins	-	C	p.E220fs
LUAD	TCGA-17-Z056-01	IFRD2	ENST00000414734.1	chr3	50326685:50326791:50326877:50327193:50327359:50327517,	50326878	50327193	50326997	50326998	Frame_Shift_Ins	-	C	p.E220fs
LUAD	TCGA-17-Z056-01	ATP10B	ENST00000521033.1,ENST00000326831.3,ENST00000517802.1,ENST00000327245.5	chr5	160067471:160067599:160071144:160071251:160076177:160076263,	160071145	160071251	160071224	160071224	Frame_Shift_Del	G	-	p.G263fs
LUAD	TCGA-17-Z056-01	ZNF43	ENST00000354959.4	chr19	22000719:22000788:22001896:22002023:22025946:22026128,22000719:22000788:22001896:22002023:22018837:22018989,	22001897	22002023	22001953	22001953	Frame_Shift_Del	T	-	p.Q20fs
LUAD	TCGA-17-Z057-01	UNC93A	ENST00000230256.3	chr6	167709519:167709749:167711432:167711558:167717406:167717621,	167711433	167711558	167711436	167711436	Frame_Shift_Del	C	-	p.T168fs
LUAD	TCGA-17-Z057-01	ARFGAP2	ENST00000531750.1,ENST00000532478.1	chr11	47195331:47195391:47196565:47196649:47196732:47196864,47195309:47195433:47196565:47196649:47196732:47196864,47193862:47193884:47196565:47196649:47196732:47196864,	47196566	47196649	47196580	47196583	Frame_Shift_Del	TGAA	-	p.FT155fs
LUAD	TCGA-17-Z057-01	EEA1	ENST00000418984.3,ENST00000322349.8	chr12	93205054:93205210:93206755:93206869:93209975:93210176,	93206756	93206869	93206841	93206841	Frame_Shift_Del	G	-	p.S653fs
LUAD	TCGA-17-Z057-01	ME2	ENST00000585680.1	chr18	48458627:48458730:48466657:48466756:48473386:48473524,	48466658	48466756	48466751	48466752	Frame_Shift_Ins	-	T	p.*528fs
LUAD	TCGA-17-Z057-01	GRIPAP1	ENST00000376425.3,ENST00000376441.1,ENST00000376423.4	chrX	48853661:48853769:48854565:48854592:48855649:48855711,	48854566	48854592	48854568	48854571	Frame_Shift_Del	GAGC	-	p.AQ65fs
LUAD	TCGA-17-Z058-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5399028:5399200:5401224:5401353:5401527:5401658,	5401225	5401353	5401258	5401259	Frame_Shift_Ins	-	GG	p.Q1543fs
LUAD	TCGA-17-Z061-01	SLCO2B1	ENST00000454962.2,ENST00000428359.2,ENST00000525650.1,ENST00000341411.4,ENST00000531756.1,ENST00000532236.1,ENST00000289575.5	chr11	74883423:74883614:74899180:74899283:74904262:74904620,	74899181	74899283	74899193	74899193	Frame_Shift_Del	C	-	p.P329fs
LUAD	TCGA-17-Z061-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74971685:74971877:74972750:74972894:74973400:74973526,	74972751	74972894	74972756	74972757	Frame_Shift_Ins	-	C	p.W1391fs
LUAD	TCGA-17-Z062-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
LUAD	TCGA-17-Z062-01	GPC2	ENST00000480087.1,ENST00000471050.1,ENST00000292377.2,ENST00000490629.1	chr7	99769812:99769840:99771457:99771620:99772307:99772347,	99771458	99771620	99771549	99771549	Frame_Shift_Del	G	-	p.P267fs
LUAD	TCGA-17-Z062-01	ATP2B1	ENST00000359142.3,ENST00000428670.3,ENST00000348959.3	chr12	90028773:90029028:90035934:90036132:90049455:90049796,	90035935	90036132	90036108	90036109	Frame_Shift_Del	AA	-	p.L78fs
LUAD	TCGA-17-Z062-01	MEDAG	ENST00000380482.4	chr13	31495154:31495263:31495697:31495983:31498447:31498586,	31495698	31495983	31495730	31495730	Frame_Shift_Del	C	-	p.F178fs
LUAD	TCGA-17-Z062-01	KDELR3	ENST00000216014.4,ENST00000471268.1,ENST00000409006.3	chr22	38870527:38870628:38875597:38875756:38877216:38877469,	38875598	38875756	38875737	38875738	Frame_Shift_Del	AC	-	p.Y111fs
LUAD	TCGA-17-Z062-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45779346:45779493:45782746:45782926:45785591:45785777,	45782747	45782926	45782818	45782819	Frame_Shift_Del	CA	-	p.CG613fs
LUAD	TCGA-35-3615-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
LUAD	TCGA-35-3615-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
LUAD	TCGA-35-3615-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931269	73931270	Frame_Shift_Ins	-	C	p.GG347fs
LUAD	TCGA-35-3615-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931269	73931270	Frame_Shift_Ins	-	C	p.GG347fs
LUAD	TCGA-35-3615-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-35-3615-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
LUAD	TCGA-35-3615-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
LUAD	TCGA-35-3615-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
LUAD	TCGA-35-3615-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
LUAD	TCGA-35-3615-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.HP1875fs
LUAD	TCGA-35-3615-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
LUAD	TCGA-35-3615-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.L333fs
LUAD	TCGA-35-3615-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
LUAD	TCGA-35-3615-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
LUAD	TCGA-35-3615-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47032526:47032596:47034417:47034491:47035898:47035985,	47034418	47034491	47034469	47034470	Frame_Shift_Ins	-	A	p.T185fs
LUAD	TCGA-35-3615-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181544	18181545	Frame_Shift_Ins	-	G	p.PG757fs
LUAD	TCGA-35-4122-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
LUAD	TCGA-35-4123-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54157539:54157621:54354468:54354585:54420741:54420801,	54354469	54354585	54354528	54354528	Frame_Shift_Del	A	-	p.V88fs
LUAD	TCGA-35-5375-01	USP4	ENST00000485450.1,ENST00000431357.1,ENST00000265560.4,ENST00000351842.4	chr3	49318176:49318280:49321419:49321569:49321898:49322017,	49321420	49321569	49321528	49321528	Frame_Shift_Del	T	-	p.K764fs
LUAD	TCGA-35-5375-01	PKIB	ENST00000392490.1	chr6	122996222:122996289:123038931:123039108:123046272:123046426,122954427:122954512:123038931:123039108:123046272:123046426,	123038932	123039108	123039058	123039062	Frame_Shift_Del	ACGGA	-	p.DG40fs
LUAD	TCGA-35-5375-01	GTF2E2	ENST00000355904.4	chr8	30437797:30437913:30464573:30464667:30469815:30469882,	30464574	30464667	30464658	30464658	Frame_Shift_Del	C	-	p.D187fs
LUAD	TCGA-35-5375-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
LUAD	TCGA-35-5375-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645895	70645896	Frame_Shift_Ins	-	T	p.EQ781fs
LUAD	TCGA-38-4625-01	CCDC30	ENST00000509712.1,ENST00000477155.1	chr1	43000559:43000660:43002146:43002272:43011080:43011250,	43002147	43002272	43002200	43002201	Frame_Shift_Del	AG	-	p.KE15fs
LUAD	TCGA-38-4625-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192527	211192527	Frame_Shift_Del	G	-	p.I210fs
LUAD	TCGA-38-4625-01	KCNH1	ENST00000367007.4	chr1	211092981:211093411:211192205:211192598:211256121:211256240,	211192206	211192598	211192527	211192527	Frame_Shift_Del	G	-	p.I210fs
LUAD	TCGA-38-4625-01	MRPS35	ENST00000542199.1,ENST00000538315.1,ENST00000081029.3	chr12	27867712:27867753:27869223:27869391:27872740:27872801,	27869224	27869391	27869349	27869349	Frame_Shift_Del	G	-	p.K93fs
LUAD	TCGA-38-4625-01	CARD8	ENST00000518979.1,ENST00000518622.1,ENST00000359009.4	chr19	48724986:48725112:48733694:48733954:48734033:48734263,	48733695	48733954	48733782	48733783	Frame_Shift_Ins	-	G	p.I316fs
LUAD	TCGA-38-4625-01	CARD8	ENST00000447740.2,ENST00000521613.1,ENST00000520753.1,ENST00000517510.1,ENST00000522773.1,ENST00000519646.1,ENST00000519940.1,ENST00000520153.1,ENST00000521415.1,ENST00000391898.3,ENST00000520015.1,ENST00000522051.1,ENST00000357778.5	chr19	48724986:48725112:48733694:48733957:48734033:48734263,	48733695	48733957	48733782	48733783	Frame_Shift_Ins	-	G	p.I316fs
LUAD	TCGA-38-4625-01	PPP6R1	ENST00000412770.2,ENST00000587283.1	chr19	55751193:55751279:55751366:55751482:55751603:55751668,	55751367	55751482	55751401	55751401	Frame_Shift_Del	C	-	p.G481fs
LUAD	TCGA-38-4626-01	MYH15	ENST00000273353.3	chr3	108099215:108100406:108102441:108102576:108103533:108103629,	108102442	108102576	108102463	108102463	Frame_Shift_Del	T	-	p.K1935fs
LUAD	TCGA-38-4626-01	IQGAP2	ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3,ENST00000514001.1,ENST00000505766.1	chr5	75960850:75961000:75964505:75964669:75967583:75967609,	75964506	75964669	75964638	75964638	Frame_Shift_Del	C	-	p.L938fs
LUAD	TCGA-38-4626-01	PDCD11	ENST00000369797.3	chr10	105197771:105197828:105198442:105198565:105199502:105199625,	105198443	105198565	105198508	105198508	Frame_Shift_Del	A	-	p.E1323fs
LUAD	TCGA-38-4628-01	AGPAT2	ENST00000538402.1,ENST00000472820.1,ENST00000371696.2	chr9	139569186:139569259:139571036:139571132:139571412:139571587,	139571037	139571132	139571073	139571073	Frame_Shift_Del	A	-	p.F184fs
LUAD	TCGA-38-4628-01	HNRNPC	ENST00000555309.1,ENST00000554417.1,ENST00000557201.1,ENST00000556513.1,ENST00000554539.1,ENST00000320084.7,ENST00000554383.1,ENST00000555914.1,ENST00000554455.1,ENST00000420743.2,ENST00000556897.1,ENST00000556628.1,ENST00000430246.2,ENST00000553300.1,ENST00000556142.1,ENST00000557157.1,ENST00000553753.1,ENST00000449098.1,ENST00000336053.6,ENST00000554969.1	chr14	21679968:21680082:21681118:21681276:21698477:21698525,	21681119	21681276	21681149	21681161	Frame_Shift_Del	CACTCTTAGAATT	-	p.NSKSG161fs
LUAD	TCGA-38-4629-01	FBXO24	ENST00000465843.1,ENST00000241071.6,ENST00000468962.1,ENST00000427939.2,ENST00000360609.2	chr7	100189289:100189525:100190405:100190640:100192005:100192164,	100190406	100190640	100190489	100190489	Frame_Shift_Del	T	-	p.G214fs
LUAD	TCGA-38-4629-01	IQUB	ENST00000466202.1,ENST00000469057.1,ENST00000324698.6	chr7	123097434:123097620:123101410:123101659:123104886:123105063,	123101411	123101659	123101441	123101441	Frame_Shift_Del	T	-	p.E659fs
LUAD	TCGA-38-4629-01	BIN2	ENST00000267012.4,ENST00000605039.1,ENST00000452142.2,ENST00000544402.1	chr12	51681891:51681972:51685374:51686128:51689579:51689662,	51685375	51686128	51685752	51685776	Frame_Shift_Del	GCTGCCCTGAAGGGCTCAGGGCTCC	-	p.GALSPSGQP372fs
LUAD	TCGA-38-4629-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578246	7578247	Frame_Shift_Ins	-	A	p.S201fs
LUAD	TCGA-38-4631-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	138163182:138163377:138169178:138169442:138208414:138208593,	138169179	138169442	138169367	138169367	Frame_Shift_Del	G	-	p.G962fs
LUAD	TCGA-38-4631-01	TMEM62	ENST00000568197.1,ENST00000260403.2,ENST00000565291.1,ENST00000564494.1,ENST00000564698.1	chr15	43427709:43427847:43430771:43430817:43438690:43438703,	43430772	43430817	43430790	43430790	Frame_Shift_Del	G	-	p.S150fs
LUAD	TCGA-38-4631-01	RBBP7	ENST00000380084.4,ENST00000444437.1,ENST00000404022.1,ENST00000481586.1,ENST00000380087.2	chrX	16870168:16870245:16870673:16870751:16870871:16870905,	16870674	16870751	16870709	16870709	Frame_Shift_Del	G	-	p.H310fs
LUAD	TCGA-38-4632-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54120810:54120936:54122143:54122213:54122719:54122873,	54122144	54122213	54122188	54122188	Frame_Shift_Del	C	-	p.E1291fs
LUAD	TCGA-38-4632-01	AGAP3	ENST00000397238.2,ENST00000461065.1,ENST00000463381.1,ENST00000473633.1	chr7	150839249:150839340:150839498:150839721:150840427:150840683,	150839499	150839721	150839627	150839628	Frame_Shift_Ins	-	T	p.G727fs
LUAD	TCGA-38-4632-01	CLEC18B	ENST00000425714.2	chr16	74446934:74447056:74447476:74447574:74451956:74452196,74446934:74447056:74447476:74447574:74454398:74454490,	74447477	74447574	74447479	74447479	Frame_Shift_Del	G	-	p.P184fs
LUAD	TCGA-38-7271-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
LUAD	TCGA-44-2655-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-44-2655-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
LUAD	TCGA-44-2655-01	VCAM1	ENST00000370115.1,ENST00000347652.2,ENST00000294728.2	chr1	101185319:101185480:101186031:101186307:101188575:101188896,	101186032	101186307	101186128	101186128	Frame_Shift_Del	C	-	p.S54fs
LUAD	TCGA-44-2655-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-44-2655-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.A377fs
LUAD	TCGA-44-2655-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.S54fs
LUAD	TCGA-44-2655-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-44-2655-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-44-2655-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
LUAD	TCGA-44-2655-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837307	17837308	Frame_Shift_Ins	-	C	p.E319fs
LUAD	TCGA-44-2655-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
LUAD	TCGA-44-2655-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
LUAD	TCGA-44-2655-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508369	71508370	Frame_Shift_Ins	-	A	p.K169fs
LUAD	TCGA-44-2655-01	C7orf57	ENST00000435376.1,ENST00000430738.1,ENST00000420324.1,ENST00000348904.3,ENST00000539619.1	chr7	48083077:48083186:48086056:48086213:48089476:48089574,	48086057	48086213	48086205	48086205	Frame_Shift_Del	A	-	p.K169fs
LUAD	TCGA-44-2655-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-44-2655-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
LUAD	TCGA-44-2655-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
LUAD	TCGA-44-2655-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114346	57114346	Frame_Shift_Del	A	-	p.L323fs
LUAD	TCGA-44-2655-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114346	57114346	Frame_Shift_Del	A	-	p.L323fs
LUAD	TCGA-44-2655-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.HP1875fs
LUAD	TCGA-44-2655-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
LUAD	TCGA-44-2655-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
LUAD	TCGA-44-2655-01	PCK1	ENST00000319441.4	chr20	56136570:56136691:56137126:56137308:56137751:56137955,	56137127	56137308	56137217	56137217	Frame_Shift_Del	C	-	p.I105fs
LUAD	TCGA-44-2655-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LUAD	TCGA-44-2656-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
LUAD	TCGA-44-2656-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-44-2656-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-44-2656-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
LUAD	TCGA-44-2656-01	WDR35	ENST00000281405.4,ENST00000345530.3	chr2	20132143:20132208:20133161:20133272:20135231:20135364,	20133162	20133272	20133236	20133237	Frame_Shift_Del	CA	-	p.CE872fs
LUAD	TCGA-44-2656-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
LUAD	TCGA-44-2656-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
LUAD	TCGA-44-2656-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.T1044fs
LUAD	TCGA-44-2656-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
LUAD	TCGA-44-2656-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-44-2656-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
LUAD	TCGA-44-2656-01	FNBP4	ENST00000263773.5,ENST00000534003.1	chr11	47774589:47774654:47776079:47776216:47786821:47786914,	47776080	47776216	47776187	47776187	Frame_Shift_Del	C	-	p.D115fs
LUAD	TCGA-44-2656-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489924	20489925	Frame_Shift_Ins	-	C	p.LP402fs
LUAD	TCGA-44-2656-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579470	Frame_Shift_Del	C	-	p.V73fs
LUAD	TCGA-44-2656-01	GIPR	ENST00000304207.8,ENST00000263281.3,ENST00000590918.1	chr19	46180206:46180366:46180580:46180641:46180967:46181037,	46180581	46180641	46180611	46180611	Frame_Shift_Del	T	-	p.V275fs
LUAD	TCGA-44-2656-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
LUAD	TCGA-44-2656-01	TPST2	ENST00000398110.2,ENST00000403880.1,ENST00000338754.4	chr22	26928660:26928711:26932253:26932452:26936754:26936837,	26932254	26932452	26932298	26932299	Frame_Shift_Ins	-	G	p.L333fs
LUAD	TCGA-44-2656-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.HP25fs
LUAD	TCGA-44-2656-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.A377fs
LUAD	TCGA-44-2656-01	HNRNPD	ENST00000514671.1,ENST00000353341.4,ENST00000508119.1	chr4	83276456:83276554:83277948:83278048:83278465:83278545,	83277949	83278048	83278025	83278025	Frame_Shift_Del	C	-	p.S259fs
LUAD	TCGA-44-2656-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
LUAD	TCGA-44-2656-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.R314fs
LUAD	TCGA-44-2656-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
LUAD	TCGA-44-2656-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34878346:34878411:34882089:34882227:34883558:34883611,	34882090	34882227	34882121	34882122	Frame_Shift_Ins	-	T	p.S807fs
LUAD	TCGA-44-2657-01	NOP56	ENST00000484998.1,ENST00000480992.1	chr20	2636261:2636392:2636579:2636860:2637046:2637195,	2636580	2636860	2636619	2636619	Frame_Shift_Del	A	-	p.N317fs
LUAD	TCGA-44-2657-01	NOP56	ENST00000415272.1,ENST00000467196.1,ENST00000329276.5	chr20	2636261:2636392:2636579:2636680:2637046:2637195,	2636580	2636680	2636619	2636619	Frame_Shift_Del	A	-	p.N317fs
LUAD	TCGA-44-2657-01	OVOL2	ENST00000483661.1,ENST00000278780.6	chr20	18005242:18005596:18022177:18022367:18037300:18037521,	18022178	18022367	18022316	18022317	Frame_Shift_Del	CA	-	p.CG124fs
LUAD	TCGA-44-2657-01	ARFGAP1	ENST00000370275.4,ENST00000520485.1,ENST00000522959.1,ENST00000370283.4,ENST00000524192.2,ENST00000522403.2,ENST00000353546.3,ENST00000519273.2,ENST00000519531.1,ENST00000523114.1,ENST00000550188.1	chr20	61906928:61906992:61907442:61907552:61907831:61907899,	61907443	61907552	61907501	61907501	Frame_Shift_Del	G	-	p.W40fs
LUAD	TCGA-44-2659-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-44-2659-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
LUAD	TCGA-44-2659-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-44-2659-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.A377fs
LUAD	TCGA-44-2659-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.S54fs
LUAD	TCGA-44-2659-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
LUAD	TCGA-44-2659-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-44-2659-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-44-2659-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
LUAD	TCGA-44-2659-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-44-2659-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
LUAD	TCGA-44-2659-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
LUAD	TCGA-44-2659-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76371428	76371429	Frame_Shift_Ins	-	G	p.L403fs
LUAD	TCGA-44-2659-01	UTP20	ENST00000261637.4	chr12	101723018:101723227:101727078:101727222:101728202:101728282,	101727079	101727222	101727153	101727153	Frame_Shift_Del	G	-	p.L1164fs
LUAD	TCGA-44-2659-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054754	72054755	Frame_Shift_Ins	-	C	p.GP55fs
LUAD	TCGA-44-2659-01	SMARCD2	ENST00000584400.1,ENST00000323347.10,ENST00000225742.9,ENST00000448276.2	chr17	61912850:61912927:61914281:61914404:61914554:61914597,	61914282	61914404	61914346	61914346	Frame_Shift_Del	T	-	p.K168fs
LUAD	TCGA-44-2659-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.T130fs
LUAD	TCGA-44-2659-01	FERMT1	ENST00000217289.4	chr20	6088178:6088281:6090944:6091158:6093123:6093270,	6090945	6091158	6091014	6091015	Frame_Shift_Ins	-	G	p.V226fs
LUAD	TCGA-44-2659-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
LUAD	TCGA-44-2659-01	SMARCC1	ENST00000425518.1,ENST00000254480.5	chr3	47629079:47629796:47632150:47632327:47651555:47651817,	47632151	47632327	47632266	47632266	Frame_Shift_Del	G	-	p.P1035fs
LUAD	TCGA-44-2659-01	COL11A1	ENST00000358392.2,ENST00000427239.1	chr1	103491076:103491169:103491355:103491508:103496671:103496800,	103491356	103491508	103491427	103491428	Frame_Shift_Ins	-	G	p.I288fs
LUAD	TCGA-44-2659-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.Q289fs
LUAD	TCGA-44-2659-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763923	74763924	Frame_Shift_Ins	-	C	p.A275fs
LUAD	TCGA-44-2659-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
LUAD	TCGA-44-2659-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
LUAD	TCGA-44-2659-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846337	20846338	Frame_Shift_Ins	-	C	p.C1856fs
LUAD	TCGA-44-2659-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
LUAD	TCGA-44-2659-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
LUAD	TCGA-44-2661-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121039	95121040	Frame_Shift_Ins	-	A	p.V186fs
LUAD	TCGA-44-2662-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-44-2662-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-44-2662-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
LUAD	TCGA-44-2662-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
LUAD	TCGA-44-2662-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
LUAD	TCGA-44-2662-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151151947	151151951	Frame_Shift_Del	CCTCC	-	p.SS567fs
LUAD	TCGA-44-2662-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-44-2662-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425145	59425146	Frame_Shift_Ins	-	G	p.G160fs
LUAD	TCGA-44-2662-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57115173	57115174	Frame_Shift_Ins	-	G	p.P47fs
LUAD	TCGA-44-2662-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57115173	57115174	Frame_Shift_Ins	-	G	p.P47fs
LUAD	TCGA-44-2662-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262563	25262564	Frame_Shift_Ins	-	G	p.G112fs
LUAD	TCGA-44-2662-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.FP623fs
LUAD	TCGA-44-2662-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328258	40328259	Frame_Shift_Ins	-	C	p.S215fs
LUAD	TCGA-44-2662-01	NECAB3	ENST00000488489.1,ENST00000606525.1,ENST00000480994.1,ENST00000478237.1,ENST00000607805.1,ENST00000485399.1,ENST00000375238.4,ENST00000494174.1	chr20	32246527:32246640:32247302:32247356:32247458:32247538,	32247303	32247356	32247349	32247350	Frame_Shift_Ins	-	G	p.A278fs
LUAD	TCGA-44-2662-01	NECAB3	ENST00000246190.6,ENST00000483813.1	chr20	32246527:32246640:32247302:32247538:32247690:32247804,	32247303	32247538	32247349	32247350	Frame_Shift_Ins	-	G	p.A278fs
LUAD	TCGA-44-2662-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
LUAD	TCGA-44-2662-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
LUAD	TCGA-44-2662-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LUAD	TCGA-44-2665-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-44-2665-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
LUAD	TCGA-44-2665-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
LUAD	TCGA-44-2665-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
LUAD	TCGA-44-2665-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
LUAD	TCGA-44-2665-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
LUAD	TCGA-44-2665-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975472	13975473	Frame_Shift_Ins	-	G	p.T121fs
LUAD	TCGA-44-2665-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-44-2665-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968043	5968044	Frame_Shift_Ins	-	T	p.NK729fs
LUAD	TCGA-44-2665-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560463	75560464	Frame_Shift_Ins	-	C	p.P1690fs
LUAD	TCGA-44-2665-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.R788fs
LUAD	TCGA-44-2665-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
LUAD	TCGA-44-2665-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
LUAD	TCGA-44-2665-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.T539fs
LUAD	TCGA-44-2665-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.R164fs
LUAD	TCGA-44-2665-01	DCD	ENST00000456047.2	chr12	55038413:55038540:55038667:55038731:55038956:55039040,	55038668	55038731	55038703	55038704	Frame_Shift_Ins	-	T	p.A106fs
LUAD	TCGA-44-2665-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
LUAD	TCGA-44-2665-01	POU2F2	ENST00000560804.2,ENST00000560398.1	chr19	42603867:42603973:42621401:42621584:42626277:42626334,	42621402	42621584	42621520	42621521	Frame_Shift_Ins	-	G	p.D84fs
LUAD	TCGA-44-2665-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-44-2665-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-44-2665-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289119	31289120	Frame_Shift_Ins	-	C	p.P627fs
LUAD	TCGA-44-2665-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
LUAD	TCGA-44-2665-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-44-2665-01	TBC1D1	ENST00000446803.2,ENST00000261439.4,ENST00000508802.1,ENST00000491553.1	chr4	38016503:38016594:38019974:38020064:38022211:38022316,	38019975	38020064	38020014	38020014	Frame_Shift_Del	A	-	p.K309fs
LUAD	TCGA-44-2665-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173389	154173390	Frame_Shift_Ins	-	C	p.P223fs
LUAD	TCGA-44-2665-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173389	154173390	Frame_Shift_Ins	-	C	p.P223fs
LUAD	TCGA-44-2665-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.R314fs
LUAD	TCGA-44-2665-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984683	123984684	Frame_Shift_Ins	-	C	p.Q465fs
LUAD	TCGA-44-2666-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-44-2666-01	SRSF11	ENST00000370950.3,ENST00000463877.1	chr1	70671417:70671463:70687294:70687522:70694104:70694238,	70687295	70687522	70687376	70687377	Frame_Shift_Ins	-	G	p.W20fs
LUAD	TCGA-44-2666-01	SRSF11	ENST00000454435.2,ENST00000405432.1	chr1	70671417:70671463:70687297:70687522:70694104:70694238,	70687298	70687522	70687376	70687377	Frame_Shift_Ins	-	G	p.W20fs
LUAD	TCGA-44-2666-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261078	151261079	Frame_Shift_Ins	-	C	p.RP730fs
LUAD	TCGA-44-2666-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
LUAD	TCGA-44-2666-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-44-2666-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-44-2666-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181821	154181822	Frame_Shift_Ins	-	G	p.PG580fs
LUAD	TCGA-44-2666-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837307	17837308	Frame_Shift_Ins	-	C	p.E319fs
LUAD	TCGA-44-2666-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
LUAD	TCGA-44-2666-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
LUAD	TCGA-44-2666-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-44-2666-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
LUAD	TCGA-44-2666-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
LUAD	TCGA-44-2666-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.Q1005fs
LUAD	TCGA-44-2666-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.R314fs
LUAD	TCGA-44-2666-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
LUAD	TCGA-44-2666-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
LUAD	TCGA-44-2666-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
LUAD	TCGA-44-2666-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270149	66270150	Frame_Shift_Ins	-	C	p.T99fs
LUAD	TCGA-44-2666-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
LUAD	TCGA-44-2666-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
LUAD	TCGA-44-2666-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
LUAD	TCGA-44-2666-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
LUAD	TCGA-44-2666-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
LUAD	TCGA-44-2668-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-44-2668-01	GON4L	ENST00000471341.1,ENST00000368331.1,ENST00000467009.1,ENST00000437809.1,ENST00000361040.5,ENST00000271883.5	chr1	155774739:155774932:155783424:155783595:155784120:155784240,	155783425	155783595	155783535	155783536	Frame_Shift_Ins	-	C	p.GP447fs
LUAD	TCGA-44-2668-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026383	226026384	Frame_Shift_Ins	-	C	p.NP131fs
LUAD	TCGA-44-2668-01	SPAG16	ENST00000374309.3,ENST00000331683.5,ENST00000452556.1,ENST00000406979.2	chr2	214727208:214727352:214794683:214794869:214878674:214878801,	214794684	214794869	214794857	214794857	Frame_Shift_Del	G	-	p.W463fs
LUAD	TCGA-44-2668-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
LUAD	TCGA-44-2668-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
LUAD	TCGA-44-2668-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
LUAD	TCGA-44-2668-01	FAT1	ENST00000441802.2	chr4	187516842:187516980:187517693:187518325:187518835:187518946,	187517694	187518325	187518096	187518096	Frame_Shift_Del	C	-	p.V4200fs
LUAD	TCGA-44-2668-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-44-2668-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
LUAD	TCGA-44-2668-01	MYOF	ENST00000359263.4,ENST00000371489.1,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95168543:95168672:95169329:95169496:95185827:95185915,	95169330	95169496	95169434	95169435	Frame_Shift_Ins	-	C	p.Q166fs
LUAD	TCGA-44-2668-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
LUAD	TCGA-44-2668-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
LUAD	TCGA-44-2668-01	MRPL51	ENST00000537701.1	chr12	6601316:6601633:6602027:6602138:6602882:6603006,	6602028	6602138	6602094	6602095	Frame_Shift_Ins	-	G	p.S42fs
LUAD	TCGA-44-2668-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610700	41610701	Frame_Shift_Ins	-	G	p.T134fs
LUAD	TCGA-44-2668-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-44-2668-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-44-2668-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97869804:97869833:97869927:97870000:97871676:97871705,	97869928	97870000	97869978	97869978	Frame_Shift_Del	G	-	p.K1013fs
LUAD	TCGA-44-2668-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.Q289fs
LUAD	TCGA-44-2668-01	CEP112	ENST00000541355.1,ENST00000535342.2,ENST00000392769.2,ENST00000537949.1	chr17	63923699:63923807:63957580:63957716:64001807:64001887,	63957581	63957716	63957643	63957643	Frame_Shift_Del	C	-	p.E605fs
LUAD	TCGA-44-3396-01	DHX15	ENST00000336812.4	chr4	24534486:24534677:24538673:24538796:24541730:24541922,	24538674	24538796	24538793	24538793	Frame_Shift_Del	G	-	p.P597fs
LUAD	TCGA-44-3396-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676873	36676874	Frame_Shift_Ins	-	C	p.PP135fs
LUAD	TCGA-44-3398-01	USP34	ENST00000398571.2	chr2	61622317:61622368:61632842:61633263:61647880:61647968,	61632843	61633263	61633065	61633068	Frame_Shift_Del	CTCT	-	p.RE109fs
LUAD	TCGA-44-3918-01	ELAVL4	ENST00000448907.2,ENST00000371821.1,ENST00000371823.4,ENST00000371819.1,ENST00000357083.4,ENST00000371827.1,ENST00000474675.1,ENST00000371824.1	chr1	50642801:50642864:50659436:50659590:50661232:50661458,	50659437	50659590	50659500	50659500	Frame_Shift_Del	C	-	p.P140fs
LUAD	TCGA-44-3918-01	CD1B	ENST00000368168.3	chr1	158298710:158298804:158299159:158299438:158299641:158299920,	158299160	158299438	158299199	158299199	Frame_Shift_Del	G	-	p.H283fs
LUAD	TCGA-44-3918-01	ILDR2	ENST00000469934.2,ENST00000529071.1,ENST00000271417.3	chr1	166896303:166896417:166904537:166904714:166905827:166905974,	166904538	166904714	166904654	166904654	Frame_Shift_Del	C	-	p.G255fs
LUAD	TCGA-44-3918-01	SPATA17	ENST00000492747.2,ENST00000366933.4	chr1	217915320:217915440:217947675:217947879:217955515:217955650,	217947676	217947879	217947839	217947839	Frame_Shift_Del	G	-	p.R228fs
LUAD	TCGA-44-3918-01	WDR91	ENST00000466182.1,ENST00000423565.1,ENST00000354475.4	chr7	134871723:134871921:134873184:134873297:134874095:134874204,	134873185	134873297	134873250	134873250	Frame_Shift_Del	C	-	p.E606fs
LUAD	TCGA-44-3918-01	NELL2	ENST00000547751.1,ENST00000452445.2,ENST00000333837.4,ENST00000552993.1,ENST00000551601.1,ENST00000437801.2,ENST00000395487.2,ENST00000549027.1,ENST00000553120.1,ENST00000429094.2	chr12	45173631:45173805:45209768:45209919:45269007:45269136,	45209769	45209919	45209815	45209815	Frame_Shift_Del	G	-	p.H97fs
LUAD	TCGA-44-3918-01	CDS2	ENST00000535100.1	chr20	5165503:5165591:5166403:5166472:5167332:5167420,5165503:5165591:5166403:5166472:5169712:5169832,	5166404	5166472	5166437	5166437	Frame_Shift_Del	G	-	p.G266fs
LUAD	TCGA-44-3919-01	UXS1	ENST00000497604.1,ENST00000409032.1,ENST00000283148.7,ENST00000409501.3,ENST00000540130.1	chr2	106710059:106710613:106713173:106713277:106715171:106715229,	106713174	106713277	106713239	106713239	Frame_Shift_Del	C	-	p.D362fs
LUAD	TCGA-44-4112-01	ASTN1	ENST00000361833.2,ENST00000281881.3,ENST00000424564.2,ENST00000367654.3,ENST00000367657.3	chr1	176926813:176926964:176927480:176927618:176934298:176934373,	176927481	176927618	176927566	176927566	Frame_Shift_Del	C	-	p.V559fs
LUAD	TCGA-44-4112-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371236	240371236	Frame_Shift_Del	C	-	p.P1046fs
LUAD	TCGA-44-4112-01	UGT3A1	ENST00000333811.4	chr5	35968120:35968235:35988551:35988653:35991066:35991707,35968120:35968235:35988551:35988653:35991248:35991436,35968120:35968235:35988551:35988653:35997340:35997431,	35988552	35988653	35988559	35988560	Frame_Shift_Ins	-	A	p.Y63fs
LUAD	TCGA-44-4112-01	YBX2	ENST00000571485.1,ENST00000007699.5,ENST00000571464.1,ENST00000570720.1,ENST00000571834.1	chr17	7192855:7193044:7193286:7193390:7193569:7193711,	7193287	7193390	7193314	7193314	Frame_Shift_Del	G	-	p.P275fs
LUAD	TCGA-44-4112-01	INTS2	ENST00000444766.3,ENST00000251334.6	chr17	59946394:59946500:59946633:59946741:59947097:59947349,	59946634	59946741	59946733	59946733	Frame_Shift_Del	T	-	p.P1021fs
LUAD	TCGA-44-4112-01	NONO	ENST00000418921.1	chrX	70511766:70511822:70514247:70514378:70516414:70516510,	70514248	70514378	70514295	70514295	Frame_Shift_Del	A	-	p.G100fs
LUAD	TCGA-44-4112-01	NONO	ENST00000276079.8,ENST00000535149.1,ENST00000373856.3,ENST00000373841.1,ENST00000471419.2	chrX	70511766:70511822:70514076:70514378:70516414:70516510,	70514077	70514378	70514295	70514295	Frame_Shift_Del	A	-	p.G100fs
LUAD	TCGA-44-5643-01	CEP170	ENST00000366543.1,ENST00000366544.1,ENST00000522895.1	chr1	243332995:243333056:243335998:243336148:243349560:243349582,	243335999	243336148	243336107	243336107	Frame_Shift_Del	A	-	p.V536fs
LUAD	TCGA-44-5643-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
LUAD	TCGA-44-5643-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579580	7579580	Frame_Shift_Del	G	-	p.P36fs
LUAD	TCGA-44-5644-01	CRIM1	ENST00000280527.2	chr2	36583613:36583766:36668400:36668643:36669757:36669878,36623756:36623930:36668400:36668643:36669757:36669878,	36668401	36668643	36668413	36668414	Frame_Shift_Ins	-	T	p.V173fs
LUAD	TCGA-44-5644-01	CYSTM1	ENST00000504227.1,ENST00000509589.1	chr5	139554772:139554870:139574030:139574237:139622889:139623048,	139574031	139574237	139574143	139574143	Frame_Shift_Del	G	-	p.M31fs
LUAD	TCGA-44-5644-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095484	143095485	Frame_Shift_Ins	-	C	p.I131fs
LUAD	TCGA-44-5644-01	KMT2C	ENST00000418673.1,ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151921519:151921701:151927007:151927112:151927304:151927406,	151927008	151927112	151927043	151927044	Frame_Shift_Del	CA	-	p.CG980fs
LUAD	TCGA-44-5644-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13356745	13356746	Frame_Shift_Del	AG	-	p.L279fs
LUAD	TCGA-44-5644-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67699690	67699691	Frame_Shift_Ins	-	A	p.G748fs
LUAD	TCGA-44-5644-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42356666	42356678	Frame_Shift_Del	GAAGAGTTTTTGT	-	p.EEFLC280fs
LUAD	TCGA-44-5644-01	PSEN1	ENST00000555867.1,ENST00000394164.1,ENST00000324501.5,ENST00000406768.1,ENST00000555386.1,ENST00000357710.4,ENST00000344094.3	chr14	73678476:73678650:73683833:73683952:73685841:73685997,	73683834	73683952	73683908	73683908	Frame_Shift_Del	G	-	p.G402fs
LUAD	TCGA-44-5644-01	DMKN	ENST00000402589.2,ENST00000602679.1,ENST00000498593.1,ENST00000498211.1,ENST00000471786.2,ENST00000467637.1,ENST00000419602.1,ENST00000462126.1,ENST00000464709.2,ENST00000483855.1,ENST00000414866.2,ENST00000471017.1,ENST00000602781.1,ENST00000429837.1,ENST00000462721.1,ENST00000436012.1,ENST00000493979.1,ENST00000465927.1,ENST00000339686.3,ENST00000597212.1,ENST00000490622.1,ENST00000467532.1,ENST00000498269.1,ENST00000486450.1,ENST00000460051.1,ENST00000492341.2,ENST00000463292.1,ENST00000434389.1,ENST00000488542.2,ENST00000464894.1,ENST00000443640.1,ENST00000472252.2,ENST00000482321.1	chr19	35993037:35993085:35993731:35993788:35996619:35996667,	35993732	35993788	35993771	35993771	Frame_Shift_Del	G	-	p.P384fs
LUAD	TCGA-44-6144-01	IGF2R	ENST00000356956.1	chr6	160461591:160461756:160464179:160464320:160465545:160465689,	160464180	160464320	160464271	160464271	Frame_Shift_Del	G	-	p.Q524fs
LUAD	TCGA-44-6148-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299527	107299530	Frame_Shift_Del	AGCA	-	p.FA476fs
LUAD	TCGA-44-6148-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331664	85331665	Frame_Shift_Ins	-	A	p.*47fs
LUAD	TCGA-44-6774-01	SWAP70	ENST00000534562.1,ENST00000524817.1,ENST00000447399.2,ENST00000318950.6	chr11	9754075:9754257:9759759:9759867:9761727:9761889,	9759760	9759867	9759806	9759806	Frame_Shift_Del	G	-	p.R376fs
LUAD	TCGA-44-6774-01	FANCM	ENST00000267430.5,ENST00000542564.2,ENST00000556250.1	chr14	45636152:45636366:45639791:45639949:45642257:45642413,	45639792	45639949	45639873	45639873	Frame_Shift_Del	G	-	p.R695fs
LUAD	TCGA-44-6774-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	399145:399259:404917:405073:406929:407069,	404918	405073	405014	405015	Frame_Shift_Ins	-	T	p.F1043fs
LUAD	TCGA-44-6775-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770846	118770847	Frame_Shift_Ins	-	C	p.R1062fs
LUAD	TCGA-44-6776-01	AMPH	ENST00000428293.2,ENST00000356264.2,ENST00000325590.5	chr7	38500882:38501011:38502574:38502713:38505066:38505149,	38502575	38502713	38502605	38502605	Frame_Shift_Del	G	-	p.P286fs
LUAD	TCGA-44-6776-01	PIK3R5	ENST00000584456.1,ENST00000447110.1,ENST00000578457.1,ENST00000581552.1,ENST00000578515.1,ENST00000584803.1	chr17	8793323:8793443:8794054:8794229:8796902:8796972,	8794055	8794229	8794155	8794155	Frame_Shift_Del	C	-	p.G186fs
LUAD	TCGA-44-6776-01	SLC17A9	ENST00000488738.1,ENST00000459704.2,ENST00000483113.1,ENST00000370351.4,ENST00000370349.3	chr20	61596483:61596518:61596961:61597077:61597876:61597932,	61596962	61597077	61597059	61597059	Frame_Shift_Del	T	-	p.L342fs
LUAD	TCGA-44-6777-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209797184:209797345:209798992:209799371:209800211:209800316,	209798993	209799371	209799153	209799153	Frame_Shift_Del	T	-	p.T606fs
LUAD	TCGA-44-6777-01	HADH	ENST00000309522.3,ENST00000454409.2,ENST00000505878.1	chr4	108944629:108944719:108948843:108948916:108954331:108954448,	108948844	108948916	108948874	108948875	Frame_Shift_Ins	-	T	p.G227fs
LUAD	TCGA-44-6777-01	STEAP1	ENST00000297205.2,ENST00000475789.1	chr7	89789071:89789186:89790118:89790631:89791227:89791392,	89790119	89790631	89790346	89790352	Frame_Shift_Del	ATATTTT	-	p.QYF104fs
LUAD	TCGA-44-6778-01	WISP3	ENST00000604763.1,ENST00000454589.1,ENST00000230529.5,ENST00000361714.1,ENST00000368664.3	chr6	112375537:112375608:112382193:112382491:112385957:112385989,	112382194	112382491	112382465	112382466	Frame_Shift_Ins	-	T	p.Q125fs
LUAD	TCGA-44-6778-01	MARS	ENST00000447721.2,ENST00000537638.2,ENST00000315473.5,ENST00000262027.5,ENST00000545888.2	chr12	57892202:57892406:57894103:57894305:57898007:57898063,	57894104	57894305	57894234	57894235	Frame_Shift_Del	TG	-	p.C408fs
LUAD	TCGA-44-6778-01	MYL9	ENST00000279022.2	chr20	35173371:35173471:35176434:35176596:35177479:35177629,	35176435	35176596	35176463	35176463	Frame_Shift_Del	G	-	p.E71fs
LUAD	TCGA-44-6779-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
LUAD	TCGA-44-7659-01	GLS2	ENST00000476991.1,ENST00000494474.1,ENST00000496006.1,ENST00000424141.2,ENST00000311966.4	chr12	56868638:56868680:56868827:56868894:56869407:56869466,	56868828	56868894	56868875	56868875	Frame_Shift_Del	T	-	p.T317fs
LUAD	TCGA-44-7659-01	GLS2	ENST00000486896.1,ENST00000486433.1	chr12	56868638:56868680:56868827:56868967:56869407:56869466,	56868828	56868967	56868875	56868875	Frame_Shift_Del	T	-	p.T317fs
LUAD	TCGA-44-7660-01	VWF	ENST00000261405.5	chr12	6138507:6138654:6140609:6140744:6143853:6143992,	6140610	6140744	6140700	6140700	Frame_Shift_Del	C	-	p.G910fs
LUAD	TCGA-44-7660-01	SCARB1	ENST00000546215.1,ENST00000415380.2,ENST00000538291.1,ENST00000544327.1,ENST00000535005.1,ENST00000540495.1,ENST00000261693.6,ENST00000339570.5,ENST00000376788.1,ENST00000541205.1	chr12	125271951:125272003:125279740:125279814:125284669:125284788,	125279741	125279814	125279800	125279809	Frame_Shift_Del	GGGGATTCCC	-	p.TGIP378fs
LUAD	TCGA-44-7661-01	WDR78	ENST00000431318.1,ENST00000464352.2,ENST00000371023.3,ENST00000371026.3,ENST00000491297.2	chr1	67313166:67313361:67327829:67327985:67337052:67337192,	67327830	67327985	67327965	67327965	Frame_Shift_Del	C	-	p.D321fs
LUAD	TCGA-44-7661-01	DYNC2LI1	ENST00000479242.1,ENST00000443170.3	chr2	44010658:44010693:44016771:44016860:44021595:44021782,	44016772	44016860	44016794	44016794	Frame_Shift_Del	G	-	p.W85fs
LUAD	TCGA-44-7661-01	GC	ENST00000504199.1	chr4	72635047:72635117:72649677:72649771:72669642:72669758,	72649678	72649771	72649702	72649702	Frame_Shift_Del	C	-	p.A12fs
LUAD	TCGA-44-7662-01	SNX7	ENST00000529992.1	chr1	99150440:99150623:99156630:99156741:99161073:99161272,	99156631	99156741	99156727	99156727	Frame_Shift_Del	A	-	p.T90fs
LUAD	TCGA-44-7662-01	CRMP1	ENST00000512574.1,ENST00000324989.7,ENST00000511535.1,ENST00000397890.2	chr4	5857869:5858034:5862752:5862937:5868394:5868483,	5862753	5862937	5862865	5862865	Frame_Shift_Del	G	-	p.P181fs
LUAD	TCGA-44-7662-01	MORF4L1	ENST00000558746.1,ENST00000379535.4,ENST00000558502.1,ENST00000426013.2,ENST00000331268.5,ENST00000559345.1	chr15	79185880:79185969:79186399:79186572:79187161:79187246,	79186400	79186572	79186527	79186527	Frame_Shift_Del	C	-	p.P292fs
LUAD	TCGA-44-7667-01	IFI44L	ENST00000486882.1,ENST00000342282.3,ENST00000370751.5,ENST00000476876.1	chr1	79101021:79101174:79102716:79102888:79106705:79106806,	79102717	79102888	79102763	79102763	Frame_Shift_Del	C	-	p.T308fs
LUAD	TCGA-44-7667-01	PI4KB	ENST00000368874.4,ENST00000489223.2,ENST00000368872.1	chr1	151278739:151278839:151280049:151280277:151288048:151288148,	151280050	151280277	151280136	151280136	Frame_Shift_Del	G	-	p.R378fs
LUAD	TCGA-44-7667-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29654516:29654857:29657313:29657516:29661855:29662049,	29657314	29657516	29657487	29657487	Frame_Shift_Del	A	-	p.E1929fs
LUAD	TCGA-44-7667-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50245518:50245611:50255881:50256043:50273476:50273689,	50255882	50256043	50255995	50255995	Frame_Shift_Del	G	-	p.R519fs
LUAD	TCGA-44-7667-01	APOBEC3H	ENST00000348946.4	chr22	39497241:39497509:39497922:39498047:39498516:39498610,39497241:39497509:39497922:39498047:39499693:39500003,39497241:39497509:39497922:39498047:39499696:39500072,	39497923	39498047	39497936	39497937	Frame_Shift_Ins	-	T	p.W144fs
LUAD	TCGA-44-7669-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96314964	96314964	Frame_Shift_Del	C	-	p.P48fs
LUAD	TCGA-44-7669-01	CCDC78	ENST00000463539.1,ENST00000466708.1,ENST00000293889.6,ENST00000482152.1,ENST00000485091.1,ENST00000345165.4	chr16	773094:773161:773856:773936:774105:774205,	773857	773936	773872	773872	Frame_Shift_Del	C	-	p.G373fs
LUAD	TCGA-44-7669-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832375	39832376	Frame_Shift_Ins	-	G	p.P394fs
LUAD	TCGA-44-7669-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832375	39832376	Frame_Shift_Ins	-	G	p.P394fs
LUAD	TCGA-44-7670-01	AK4	ENST00000545314.1	chr1	65613512:65613740:65613960:65614235:65656392:65656512,65613231:65613348:65613960:65614235:65656392:65656512,	65613961	65614235	65614125	65614132	Frame_Shift_Del	GGCCGCCC	-	p.GPP12fs
LUAD	TCGA-44-7670-01	IFI44	ENST00000370747.4,ENST00000438486.1,ENST00000545124.1,ENST00000470323.1,ENST00000472152.1,ENST00000495254.1	chr1	79119927:79119964:79120698:79120894:79121046:79121196,	79120699	79120894	79120772	79120773	Frame_Shift_Ins	-	T	p.A190fs
LUAD	TCGA-44-7670-01	CLIP4	ENST00000404424.1,ENST00000493551.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29383231:29383333:29386696:29386820:29390341:29390406,	29386697	29386820	29386781	29386782	Frame_Shift_Del	CA	-	p.P540fs
LUAD	TCGA-44-7670-01	TCF7L1	ENST00000282111.3	chr2	85529606:85529739:85531017:85531120:85531377:85531461,	85531018	85531120	85531103	85531103	Frame_Shift_Del	C	-	p.L248fs
LUAD	TCGA-44-7670-01	KCNH8	ENST00000452398.1	chr3	19190025:19190287:19295145:19295379:19322689:19322821,	19295146	19295379	19295164	19295164	Frame_Shift_Del	C	-	p.A32fs
LUAD	TCGA-44-7670-01	CDK14	ENST00000406263.1,ENST00000380050.3,ENST00000265741.3	chr7	90376995:90377090:90419887:90419967:90492489:90492584,	90419888	90419967	90419930	90419930	Frame_Shift_Del	G	-	p.Q123fs
LUAD	TCGA-44-7670-01	LIN7A	ENST00000552864.1	chr12	81205243:81205462:81239508:81239718:81242029:81242101,	81239509	81239718	81239540	81239540	Frame_Shift_Del	C	-	p.R151fs
LUAD	TCGA-44-7670-01	PARP4	ENST00000381989.3	chr13	25005514:25005614:25008532:25009612:25015983:25016106,	25008533	25009612	25009604	25009605	Frame_Shift_Ins	-	A	p.C1225fs
LUAD	TCGA-44-7670-01	MAP4K5	ENST00000013125.4,ENST00000555216.1,ENST00000557390.1,ENST00000557578.1	chr14	50949078:50949134:50952295:50952360:50952821:50952863,	50952296	50952360	50952308	50952308	Frame_Shift_Del	C	-	p.D104fs
LUAD	TCGA-44-7670-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961546	41961547	Frame_Shift_Ins	-	T	p.F152fs
LUAD	TCGA-44-7670-01	LAMA5	ENST00000252999.3,ENST00000491036.1,ENST00000370691.2	chr20	60886985:60887106:60887228:60887372:60887455:60887588,	60887229	60887372	60887362	60887363	Frame_Shift_Del	GC	-	p.A3124fs
LUAD	TCGA-44-7670-01	EMD	ENST00000369842.4,ENST00000428228.1,ENST00000468294.1,ENST00000369835.3,ENST00000492448.1	chrX	153608301:153608379:153608593:153608727:153609112:153609162,	153608594	153608727	153608718	153608718	Frame_Shift_Del	C	-	p.F130fs
LUAD	TCGA-44-7671-01	SNX1	ENST00000559844.1,ENST00000261889.5,ENST00000561026.1,ENST00000380285.3,ENST00000560829.1	chr15	64424027:64424091:64426862:64427006:64428528:64428608,	64426863	64427006	64426931	64426937	Frame_Shift_Del	GCGGGAG	-	p.KRE430fs
LUAD	TCGA-44-7672-01	LY9	ENST00000368035.1,ENST00000368040.1	chr1	160789110:160789164:160793296:160793586:160797537:160798039,	160793297	160793586	160793397	160793398	Frame_Shift_Ins	-	A	p.Q548fs
LUAD	TCGA-44-7672-01	SPEG	ENST00000396698.1,ENST00000312358.7,ENST00000464989.1,ENST00000498378.1	chr2	220309766:220309883:220312695:220313993:220315857:220316001,	220312696	220313993	220313626	220313626	Frame_Shift_Del	G	-	p.P582fs
LUAD	TCGA-44-7672-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114840817:114841004:114842353:114842445:114860749:114860942,	114842354	114842445	114842405	114842405	Frame_Shift_Del	G	-	p.T505fs
LUAD	TCGA-44-7672-01	MEI1	ENST00000401548.3,ENST00000540833.1,ENST00000300398.4,ENST00000400107.1	chr22	42101507:42101558:42110005:42110079:42112044:42112150,	42110006	42110079	42110055	42110055	Frame_Shift_Del	C	-	p.C133fs
LUAD	TCGA-44-8117-01	CHRNA1	ENST00000409542.1,ENST00000348749.5,ENST00000261007.5,ENST00000435083.1	chr2	175612537:175612983:175613307:175613547:175614673:175614897,	175613308	175613547	175613379	175613380	Frame_Shift_Ins	-	G	p.G391fs
LUAD	TCGA-44-8117-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32097384:32097486:32098469:32098740:32101210:32101345,	32098470	32098740	32098552	32098552	Frame_Shift_Del	C	-	p.A2677fs
LUAD	TCGA-44-8117-01	LUM	ENST00000546642.1	chr12	91497936:91498096:91501894:91502464:91505174:91505216,	91501895	91502464	91501954	91501954	Frame_Shift_Del	T	-	p.N268fs
LUAD	TCGA-44-8117-01	LUM	ENST00000548071.1	chr12	91497936:91498096:91501894:91502060:91505174:91505216,	91501895	91502060	91501954	91501954	Frame_Shift_Del	T	-	p.N268fs
LUAD	TCGA-44-8119-01	SCNN1D	ENST00000400928.3,ENST00000325425.8,ENST00000379101.4,ENST00000379099.3,ENST00000379116.5,ENST00000338555.2	chr1	1223318:1223417:1225650:1225768:1225856:1225935,	1225651	1225768	1225740	1225750	Frame_Shift_Del	CTGCAGCTCTG	-	p.YCSSA420fs
LUAD	TCGA-44-8119-01	NSG1	ENST00000506380.1,ENST00000433139.2,ENST00000513555.1,ENST00000513829.1,ENST00000397958.1,ENST00000505246.1,ENST00000421177.2	chr4	4389384:4389485:4393201:4393318:4411299:4411410,	4393202	4393318	4393262	4393262	Frame_Shift_Del	C	-	p.P64fs
LUAD	TCGA-44-8119-01	GOLGA2	ENST00000490257.1	chr9	131023963:131024036:131024841:131025371:131027863:131027970,	131024842	131025371	131025343	131025346	Frame_Shift_Del	TCTC	-	p.RD293fs
LUAD	TCGA-44-8119-01	SLC4A1	ENST00000262418.6	chr17	42328528:42328700:42328786:42328956:42330485:42330739,	42328787	42328956	42328915	42328915	Frame_Shift_Del	G	-	p.L785fs
LUAD	TCGA-44-8119-01	LZTR1	ENST00000389355.3	chr22	21340133:21340186:21341792:21341872:21342298:21342407,21337315:21337378:21341792:21341872:21342298:21342407,	21341793	21341872	21341819	21341819	Frame_Shift_Del	C	-	p.A116fs
LUAD	TCGA-44-8120-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106134	168106135	Frame_Shift_Ins	-	A	p.TK2744fs
LUAD	TCGA-44-8120-01	CRISP3	ENST00000433368.2,ENST00000393666.1,ENST00000263045.4,ENST00000371159.4,ENST00000423399.2	chr6	49696420:49696570:49698875:49698964:49700907:49701005,	49698876	49698964	49698955	49698956	Frame_Shift_Ins	-	A	p.C200fs
LUAD	TCGA-44-8120-01	GNAQ	ENST00000286548.4,ENST00000397476.3	chr9	80335833:80336429:80343429:80343583:80409378:80409508,	80343430	80343583	80343570	80343571	Frame_Shift_Ins	-	CCTC	p.K250fs
LUAD	TCGA-44-8120-01	MS4A1	ENST00000532073.1	chr11	60231760:60231817:60233393:60233630:60234431:60234533,60231760:60231817:60233393:60233630:60234470:60234533,	60233394	60233630	60233571	60233571	Frame_Shift_Del	C	-	p.P172fs
LUAD	TCGA-44-8120-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246287	56246287	Frame_Shift_Del	G	-	p.P574fs
LUAD	TCGA-44-8120-01	NLRP9	ENST00000332836.2,ENST00000590200.1	chr19	56235345:56235510:56241196:56241358:56243364:56244916,	56241197	56241358	56241296	56241296	Frame_Shift_Del	A	-	p.F632fs
LUAD	TCGA-44-A479-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265301	75265302	Frame_Shift_Ins	-	T	p.G1101fs
LUAD	TCGA-44-A479-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099258	56099258	Frame_Shift_Del	C	-	p.A3fs
LUAD	TCGA-44-A47A-01	DPY19L2	ENST00000538147.1,ENST00000324472.4,ENST00000536494.1	chr12	64055140:64055261:64057537:64057625:64059614:64059639,	64057538	64057625	64057579	64057579	Frame_Shift_Del	G	-	p.L137fs
LUAD	TCGA-44-A47B-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876516	27876517	Frame_Shift_Ins	-	C	p.G704fs
LUAD	TCGA-44-A47F-01	KEAP1	ENST00000585845.1	chr19	10602935:10602938:10610070:10610262:10613916:10614234,	10610071	10610262	10610187	10610187	Frame_Shift_Del	G	-	p.L175fs
LUAD	TCGA-44-A47F-01	KEAP1	ENST00000393623.2	chr19	10602935:10602938:10610070:10610756:10613372:10613572,	10610071	10610756	10610187	10610187	Frame_Shift_Del	G	-	p.L175fs
LUAD	TCGA-44-A47G-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377709	77377709	Frame_Shift_Del	G	-	p.P1293fs
LUAD	TCGA-44-A4SS-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507479	74507479	Frame_Shift_Del	G	-	p.P379fs
LUAD	TCGA-44-A4SS-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507479	74507479	Frame_Shift_Del	G	-	p.P379fs
LUAD	TCGA-44-A4SS-01	CAPG	ENST00000449030.1,ENST00000409724.1,ENST00000409670.1,ENST00000263867.4,ENST00000447219.2,ENST00000483659.1,ENST00000459793.2,ENST00000409275.1,ENST00000439385.1,ENST00000409921.1	chr2	85626357:85626408:85628287:85628452:85628651:85628711,	85628288	85628452	85628406	85628406	Frame_Shift_Del	G	-	p.P133fs
LUAD	TCGA-44-A4SS-01	ZMYM2	ENST00000382869.3	chr13	20534097:20534166:20567202:20568059:20576989:20577275,	20567203	20568059	20567946	20567946	Frame_Shift_Del	C	-	p.T245fs
LUAD	TCGA-44-A4SU-01	STK32B	ENST00000512018.1,ENST00000510398.1,ENST00000512636.1,ENST00000508728.1,ENST00000505508.1,ENST00000282908.5	chr4	5458533:5458650:5461829:5461955:5468429:5468561,	5461830	5461955	5461837	5461837	Frame_Shift_Del	C	-	p.T264fs
LUAD	TCGA-44-A4SU-01	KIF4A	ENST00000374403.3	chrX	69637737:69637854:69639510:69639633:69639911:69640682,	69639511	69639633	69639564	69639564	Frame_Shift_Del	G	-	p.L1142fs
LUAD	TCGA-49-4487-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157401	145157401	Frame_Shift_Del	G	-	p.P451fs
LUAD	TCGA-49-4487-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336954	Frame_Shift_Del	A	-	p.L123fs
LUAD	TCGA-49-4488-01	CPB1	ENST00000465718.1	chr3	148552284:148552409:148558472:148558762:148559609:148559622,	148558473	148558762	148558565	148558565	Frame_Shift_Del	G	-	p.W122fs
LUAD	TCGA-49-4488-01	CPB1	ENST00000468341.1	chr3	148552284:148552409:148558472:148558572:148559609:148559622,	148558473	148558572	148558565	148558565	Frame_Shift_Del	G	-	p.W122fs
LUAD	TCGA-49-4488-01	SYT9	ENST00000532592.1,ENST00000318881.6	chr11	7439187:7439359:7441736:7441866:7488022:7490268,	7441737	7441866	7441837	7441837	Frame_Shift_Del	C	-	p.P480fs
LUAD	TCGA-49-4490-01	LONP1	ENST00000587552.1,ENST00000590206.1,ENST00000585374.1,ENST00000590729.1,ENST00000540670.2,ENST00000360614.3,ENST00000590558.1,ENST00000593119.1	chr19	5696697:5696768:5699037:5699216:5700799:5700938,	5699038	5699216	5699070	5699071	Frame_Shift_Ins	-	C	p.D551fs
LUAD	TCGA-49-4494-01	ZNF521	ENST00000577801.1,ENST00000399425.2,ENST00000580488.1,ENST00000538137.2,ENST00000361524.3	chr18	22807583:22807661:22901971:22902151:22930870:22930911,	22901972	22902151	22902131	22902131	Frame_Shift_Del	C	-	p.D21fs
LUAD	TCGA-49-4505-01	HK3	ENST00000292432.5	chr5	176314451:176314747:176315332:176315566:176315709:176315865,	176315333	176315566	176315456	176315457	Frame_Shift_Del	CG	-	p.R394fs
LUAD	TCGA-49-4506-01	ACTR2	ENST00000260641.5	chr2	65466985:65467096:65473657:65473873:65478160:65478233,	65473658	65473873	65473856	65473859	Frame_Shift_Del	AGAG	-	p.RE120fs
LUAD	TCGA-49-4506-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198725	20198726	Frame_Shift_Ins	-	A	p.G420fs
LUAD	TCGA-49-4506-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106509606	106509606	Frame_Shift_Del	C	-	p.P534fs
LUAD	TCGA-49-4507-01	PSEN2	ENST00000422240.2,ENST00000366783.3,ENST00000496965.1,ENST00000366782.1,ENST00000495488.1,ENST00000391872.2,ENST00000340188.4	chr1	227069588:227069749:227071405:227071620:227073238:227073269,	227071406	227071620	227071533	227071534	Frame_Shift_Ins	-	CA	p.T123fs
LUAD	TCGA-49-4512-01	GLIPR1	ENST00000550491.1,ENST00000266659.3	chr12	75875613:75875859:75884185:75884298:75889356:75889442,	75884186	75884298	75884200	75884201	Frame_Shift_Ins	-	A	p.L146fs
LUAD	TCGA-49-4514-01	F13B	ENST00000367412.1	chr1	197019826:197020009:197021763:197021964:197024844:197025027,	197021764	197021964	197021794	197021794	Frame_Shift_Del	C	-	p.E509fs
LUAD	TCGA-49-4514-01	RANBP3L	ENST00000502994.1,ENST00000296604.3	chr5	36255571:36255692:36257042:36257173:36257555:36257658,	36257043	36257173	36257147	36257147	Frame_Shift_Del	G	-	p.L267fs
LUAD	TCGA-49-6742-01	EPN2	ENST00000572627.2,ENST00000571254.1,ENST00000575595.1	chr17	19215364:19215457:19216438:19216592:19232023:19232075,	19216439	19216592	19216480	19216480	Frame_Shift_Del	C	-	p.G345fs
LUAD	TCGA-49-6742-01	EPN2	ENST00000395626.1,ENST00000580579.1,ENST00000347697.2,ENST00000395620.2,ENST00000395618.3,ENST00000395628.2,ENST00000314728.5	chr17	19215364:19215457:19216417:19216592:19232023:19232075,	19216418	19216592	19216480	19216480	Frame_Shift_Del	C	-	p.G345fs
LUAD	TCGA-49-6742-01	EPN2	ENST00000494192.2	chr17	19215364:19215457:19216435:19216592:19232023:19232075,	19216436	19216592	19216480	19216480	Frame_Shift_Del	C	-	p.G345fs
LUAD	TCGA-49-6743-01	ILDR2	ENST00000469934.2,ENST00000529071.1,ENST00000271417.3	chr1	166896303:166896417:166904537:166904714:166905827:166905974,	166904538	166904714	166904644	166904644	Frame_Shift_Del	G	-	p.S258fs
LUAD	TCGA-49-6743-01	CUBN	ENST00000377833.4	chr10	16882883:16883046:16893233:16893442:16911634:16911852,	16893234	16893442	16893306	16893306	Frame_Shift_Del	A	-	p.I3197fs
LUAD	TCGA-49-6744-01	MED13	ENST00000397786.2,ENST00000578132.1	chr17	60106901:60107012:60107211:60107374:60108804:60108999,	60107212	60107374	60107282	60107283	Frame_Shift_Del	GT	-	p.IP367fs
LUAD	TCGA-49-6761-01	DDX56	ENST00000415758.1,ENST00000433257.1,ENST00000485367.1,ENST00000467318.1,ENST00000421223.1,ENST00000258772.5,ENST00000446987.1	chr7	44609613:44609727:44610356:44610476:44611090:44611323,	44610357	44610476	44610424	44610424	Frame_Shift_Del	T	-	p.T315fs
LUAD	TCGA-49-6767-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654741	29654742	Frame_Shift_Ins	-	T	p.*T1831fs
LUAD	TCGA-49-6767-01	EHD2	ENST00000263277.3,ENST00000538399.1	chr19	48229425:48229481:48239625:48239790:48244137:48244394,	48239626	48239790	48239761	48239761	Frame_Shift_Del	G	-	p.G351fs
LUAD	TCGA-49-6767-01	MROH8	ENST00000217333.8,ENST00000417458.1	chr20	35757434:35757570:35766212:35766373:35769564:35769717,35757434:35757570:35766212:35766373:35772119:35772244,	35766213	35766373	35766357	35766357	Frame_Shift_Del	C	-	p.G502fs
LUAD	TCGA-50-5044-01	C11orf74	ENST00000528092.1	chr11	36631630:36631789:36669565:36669705:36680568:36680612,36657600:36657667:36669565:36669705:36680568:36680612,36654833:36654988:36669565:36669705:36680568:36680612,	36669566	36669705	36669602	36669620	Frame_Shift_Del	TAAGCACCAGCATTCCTTC	-	p.VSTSIPS132fs
LUAD	TCGA-50-5044-01	RAD51C	ENST00000461271.1,ENST00000425173.1,ENST00000487921.1,ENST00000583539.1,ENST00000337432.4,ENST00000413590.1,ENST00000475762.1	chr17	56772508:56772550:56774053:56774220:56780556:56780690,	56774054	56774220	56774132	56774132	Frame_Shift_Del	G	-	p.E161fs
LUAD	TCGA-50-5045-01	GUSB	ENST00000304895.4,ENST00000447929.1,ENST00000345660.6,ENST00000462371.1,ENST00000421103.1,ENST00000430730.1	chr7	65432717:65432894:65435268:65435353:65439281:65439388,	65435269	65435353	65435274	65435275	Frame_Shift_Del	TG	-	p.DK490fs
LUAD	TCGA-50-5049-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42047882	42047882	Frame_Shift_Del	C	-	p.E863fs
LUAD	TCGA-50-5049-01	ABCB10	ENST00000344517.4	chr1	229654587:229654622:229657338:229657382:229661682:229661863,	229657339	229657382	229657378	229657378	Frame_Shift_Del	C	-	p.G637fs
LUAD	TCGA-50-5049-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150925237	150925237	Frame_Shift_Del	G	-	p.P1817fs
LUAD	TCGA-50-5049-01	HDAC9	ENST00000406451.4,ENST00000441542.2,ENST00000432645.2,ENST00000490851.1,ENST00000401921.1,ENST00000523867.1	chr7	18868783:18868839:18869083:18869171:18875089:18875209,	18869084	18869171	18869149	18869149	Frame_Shift_Del	G	-	p.S812fs
LUAD	TCGA-50-5049-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17425146:17425198:17426742:17426804:17430354:17430496,	17426743	17426804	17426798	17426799	Frame_Shift_Ins	-	A	p.EK64fs
LUAD	TCGA-50-5051-01	HADHA	ENST00000457468.2,ENST00000380649.3	chr2	26453059:26453162:26455027:26455147:26457084:26457223,	26455028	26455147	26455076	26455076	Frame_Shift_Del	C	-	p.L176fs
LUAD	TCGA-50-5051-01	HEATR5B	ENST00000467978.1,ENST00000233099.5,ENST00000354531.2	chr2	37268275:37268435:37276795:37276986:37280644:37280750,	37276796	37276986	37276863	37276864	Frame_Shift_Ins	-	A	p.K877fs
LUAD	TCGA-50-5051-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1	chr11	47814337:47814498:47819330:47819436:47819529:47819626,	47819331	47819436	47819339	47819340	Frame_Shift_Ins	-	A	p.P1094fs
LUAD	TCGA-50-5051-01	NLRC5	ENST00000534927.1,ENST00000262510.6,ENST00000540182.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57111630:57111714:57111854:57111932:57112961:57113045,	57111855	57111932	57111872	57111872	Frame_Shift_Del	T	-	p.L1674fs
LUAD	TCGA-50-5055-01	LAMTOR4	ENST00000474831.1	chr7	99746560:99746598:99747121:99747188:99751022:99751139,	99747122	99747188	99747177	99747180	Frame_Shift_Del	TACT	-	p.VL20fs
LUAD	TCGA-50-5055-01	LAMTOR4	ENST00000460732.1,ENST00000441173.1	chr7	99746560:99746598:99747121:99747202:99751022:99751139,	99747122	99747202	99747177	99747180	Frame_Shift_Del	TACT	-	p.VL20fs
LUAD	TCGA-50-5066-01	WDFY3	ENST00000514711.1,ENST00000295888.4,ENST00000322366.6	chr4	85617884:85617976:85623505:85623659:85625490:85625597,	85623506	85623659	85623548	85623548	Frame_Shift_Del	A	-	p.Y2835fs
LUAD	TCGA-50-5066-02	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800272	28800273	Frame_Shift_Ins	-	C	p.P344fs
LUAD	TCGA-50-5066-02	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694023	156694023	Frame_Shift_Del	G	-	p.L289fs
LUAD	TCGA-50-5066-02	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371883	240371883	Frame_Shift_Del	A	-	p.P1257fs
LUAD	TCGA-50-5066-02	WDFY3	ENST00000514711.1,ENST00000295888.4,ENST00000322366.6	chr4	85617884:85617976:85623505:85623659:85625490:85625597,	85623506	85623659	85623548	85623548	Frame_Shift_Del	A	-	p.Y2835fs
LUAD	TCGA-50-5068-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631502	55631503	Frame_Shift_Ins	-	T	p.F278fs
LUAD	TCGA-50-5072-01	SPDL1	ENST00000505977.1	chr5	169021574:169021685:169023588:169023705:169025479:169025583,	169023589	169023705	169023598	169023599	Frame_Shift_Del	TC	-	p.S309fs
LUAD	TCGA-50-5072-01	SPDL1	ENST00000265295.4,ENST00000507232.1	chr5	169021574:169021685:169023564:169023705:169025479:169025583,	169023565	169023705	169023598	169023599	Frame_Shift_Del	TC	-	p.S309fs
LUAD	TCGA-50-5930-01	CD80	ENST00000264246.3,ENST00000478182.1	chr3	119246617:119246688:119248688:119248784:119255983:119256265,	119248689	119248784	119248751	119248751	Frame_Shift_Del	G	-	p.P245fs
LUAD	TCGA-50-5930-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121668552:121668642:121671555:121671676:121674241:121674331,	121671556	121671676	121671596	121671596	Frame_Shift_Del	G	-	p.W411fs
LUAD	TCGA-50-5930-01	SLC37A2	ENST00000407458.1,ENST00000308074.4,ENST00000526405.1,ENST00000532000.1,ENST00000403796.2,ENST00000298280.5	chr11	124947345:124947424:124949007:124949143:124949579:124949656,	124949008	124949143	124949013	124949013	Frame_Shift_Del	T	-	p.V107fs
LUAD	TCGA-50-5930-01	MKNK2	ENST00000589441.1	chr19	2037630:2037828:2039629:2039855:2040132:2040176,	2039630	2039855	2039657	2039657	Frame_Shift_Del	G	-	p.A451fs
LUAD	TCGA-50-5931-01	SUPT6H	ENST00000347486.4,ENST00000314616.6,ENST00000581908.1	chr17	27014367:27014489:27015108:27015236:27016371:27016445,	27015109	27015236	27015143	27015143	Frame_Shift_Del	G	-	p.R1014fs
LUAD	TCGA-50-5933-01	PSEN2	ENST00000422240.2,ENST00000366783.3,ENST00000366782.1,ENST00000471728.1,ENST00000391872.2,ENST00000340188.4,ENST00000472139.2	chr1	227079446:227079545:227081707:227081826:227083124:227083232,	227081708	227081826	227081775	227081775	Frame_Shift_Del	G	-	p.T413fs
LUAD	TCGA-50-5933-01	TPH1	ENST00000341556.2,ENST00000250018.2	chr11	18048036:18048172:18050711:18050908:18051058:18051126,	18050712	18050908	18050811	18050811	Frame_Shift_Del	A	-	p.C190fs
LUAD	TCGA-50-5936-01	MAP2K3	ENST00000526076.2,ENST00000395491.2,ENST00000342679.4,ENST00000496046.1,ENST00000316920.6,ENST00000361818.5	chr17	21203856:21203970:21204185:21204305:21205454:21205571,	21204186	21204305	21204251	21204251	Frame_Shift_Del	G	-	p.M115fs
LUAD	TCGA-50-5941-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527385	115527386	Frame_Shift_Ins	-	A	p.K867fs
LUAD	TCGA-50-5941-01	REG3A	ENST00000393878.1,ENST00000409839.3,ENST00000305165.2	chr2	79384697:79384824:79385451:79385589:79385776:79385895,	79385452	79385589	79385513	79385513	Frame_Shift_Del	A	-	p.L91fs
LUAD	TCGA-50-5941-01	FAM168B	ENST00000409185.1,ENST00000389915.3	chr2	131812844:131813022:131813125:131813268:131829427:131829511,	131813126	131813268	131813266	131813266	Frame_Shift_Del	A	-	p.Y53fs
LUAD	TCGA-50-5941-01	LRP1B	ENST00000389484.3	chr2	141777490:141777671:141806554:141806791:141812684:141812828,	141806555	141806791	141806572	141806573	Frame_Shift_Del	TC	-	p.E591fs
LUAD	TCGA-50-5941-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156965	145156966	Frame_Shift_Ins	-	A	p.LS596fs
LUAD	TCGA-50-5941-01	FGD4	ENST00000546442.1	chr12	32729199:32729383:32734893:32735401:32751430:32751520,32717070:32717223:32734893:32735401:32751430:32751520,	32734894	32735401	32735271	32735271	Frame_Shift_Del	G	-	p.R157fs
LUAD	TCGA-50-5941-01	MAP3K12	ENST00000267079.2,ENST00000552365.1,ENST00000547035.1,ENST00000547488.1	chr12	53876348:53876973:53877132:53877270:53877390:53877507,	53877133	53877270	53877180	53877180	Frame_Shift_Del	A	-	p.L489fs
LUAD	TCGA-50-5941-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954583	62954583	Frame_Shift_Del	G	-	p.W1242fs
LUAD	TCGA-50-5941-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579471	7579471	Frame_Shift_Del	G	-	p.P72fs
LUAD	TCGA-50-5941-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000581230.1,ENST00000578804.1,ENST00000583894.1,ENST00000577922.1,ENST00000581697.1,ENST00000540698.2	chr17	62499685:62499689:62499920:62499986:62500100:62500139,	62499921	62499986	62499955	62499958	Frame_Shift_Del	TGAT	-	p.NH157fs
LUAD	TCGA-50-5942-01	PTPRC	ENST00000352140.3,ENST00000529828.1	chr1	198661475:198661502:198668692:198668833:198672426:198672475,198661475:198661502:198668692:198668833:198671515:198671659,198666009:198666038:198668692:198668833:198672426:198672475,	198668693	198668833	198668699	198668699	Frame_Shift_Del	C	-	p.S101fs
LUAD	TCGA-50-5944-01	RSPRY1	ENST00000537866.1,ENST00000564530.1,ENST00000394420.4	chr16	57255183:57255327:57261253:57261365:57264622:57264725,	57261254	57261365	57261295	57261295	Frame_Shift_Del	T	-	p.Y401fs
LUAD	TCGA-50-5946-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000507711.1	chr4	48625142:48625196:48636307:48636507:48686689:48686812,	48636308	48636507	48636331	48636332	Frame_Shift_Ins	-	A	p.S33fs
LUAD	TCGA-50-5946-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150921897	150921897	Frame_Shift_Del	G	-	p.L2931fs
LUAD	TCGA-50-5946-01	GATA3	ENST00000379328.3	chr10	8100361:8100804:8105955:8106101:8111435:8111559,	8105956	8106101	8106097	8106097	Frame_Shift_Del	G	-	p.R307fs
LUAD	TCGA-50-5946-01	GATA3	ENST00000346208.3	chr10	8100361:8100804:8105958:8106101:8111435:8111559,	8105959	8106101	8106097	8106097	Frame_Shift_Del	G	-	p.R307fs
LUAD	TCGA-50-5946-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75526811:75526928:75527594:75527765:75528567:75528664,	75527595	75527765	75527681	75527681	Frame_Shift_Del	C	-	p.F699fs
LUAD	TCGA-50-6590-01	THEMIS2	ENST00000373925.1	chr1	28203194:28203239:28206154:28206565:28208481:28208588,28203194:28203239:28206154:28206565:28211805:28211928,	28206155	28206565	28206472	28206472	Frame_Shift_Del	C	-	p.P185fs
LUAD	TCGA-50-6590-01	CDK18	ENST00000462976.1	chr1	205473929:205474006:205492274:205492753:205493359:205493457,	205492275	205492753	205492400	205492400	Frame_Shift_Del	C	-	p.N35fs
LUAD	TCGA-50-6590-01	CDK18	ENST00000506784.1	chr1	205473929:205474006:205492274:205492425:205492610:205492753,205473876:205473924:205492274:205492425:205492610:205492753,	205492275	205492425	205492400	205492400	Frame_Shift_Del	C	-	p.N35fs
LUAD	TCGA-50-6590-01	ITK	ENST00000422843.3,ENST00000519402.1	chr5	156670632:156670804:156671271:156671488:156672735:156672800,	156671272	156671488	156671325	156671325	Frame_Shift_Del	C	-	p.A429fs
LUAD	TCGA-50-6590-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149557773	149557773	Frame_Shift_Del	G	-	p.T508fs
LUAD	TCGA-50-6590-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71725417	71725418	Frame_Shift_Del	CT	-	p.E1044fs
LUAD	TCGA-50-6590-01	ATF7IP	ENST00000544627.1,ENST00000540793.1,ENST00000543189.1,ENST00000537653.1,ENST00000536444.1,ENST00000261168.4	chr12	14609494:14609568:14610140:14610229:14613428:14613501,	14610141	14610229	14610174	14610175	Frame_Shift_Ins	-	A	p.SK709fs
LUAD	TCGA-50-6590-01	NPLOC4	ENST00000572351.1,ENST00000331134.6,ENST00000374747.5,ENST00000574897.1,ENST00000539314.1	chr17	79555969:79556130:79563141:79563268:79564270:79564342,	79563142	79563268	79563220	79563220	Frame_Shift_Del	G	-	p.Q348fs
LUAD	TCGA-50-6591-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579526	7579526	Frame_Shift_Del	A	-	p.F54fs
LUAD	TCGA-50-6593-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155260043:155260469:155261546:155261728:155262967:155263134,	155261547	155261728	155261655	155261655	Frame_Shift_Del	G	-	p.R473fs
LUAD	TCGA-50-6593-01	GALNT14	ENST00000481023.1,ENST00000324589.5,ENST00000349752.5,ENST00000430167.1,ENST00000420311.2,ENST00000406653.1,ENST00000424136.1,ENST00000356174.3	chr2	31155032:31155060:31178483:31178605:31178777:31178843,31168707:31168736:31178483:31178605:31178777:31178843,	31178484	31178605	31178519	31178519	Frame_Shift_Del	C	-	p.D207fs
LUAD	TCGA-50-6593-01	ARHGEF38	ENST00000265154.2,ENST00000420470.2	chr4	106510404:106510592:106534540:106534664:106552054:106552202,	106534541	106534664	106534548	106534549	Frame_Shift_Ins	-	TATC	p.T131fs
LUAD	TCGA-50-6593-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29677200:29677336:29679274:29679432:29683477:29683529,	29679275	29679432	29679430	29679430	Frame_Shift_Del	T	-	p.L2538fs
LUAD	TCGA-50-6594-01	THEMIS2	ENST00000373921.3	chr1	28206459:28206565:28208481:28209554:28211805:28211928,	28208482	28209554	28208975	28208975	Frame_Shift_Del	C	-	p.G380fs
LUAD	TCGA-50-6594-01	SYT6	ENST00000609117.1,ENST00000610096.1,ENST00000369547.1,ENST00000607941.1,ENST00000393296.1,ENST00000610222.1	chr1	114636380:114636425:114640348:114640499:114641715:114641887,	114640349	114640499	114640403	114640403	Frame_Shift_Del	C	-	p.R487fs
LUAD	TCGA-50-6594-01	TFPI2	ENST00000451238.1	chr7	93516572:93516743:93518346:93518535:93519448:93519482,93516572:93516667:93518346:93518535:93519448:93519482,	93518347	93518535	93518455	93518459	Frame_Shift_Del	TTAGA	-	p.NLS116fs
LUAD	TCGA-50-6594-01	CTSV	ENST00000538255.1,ENST00000259470.5	chr9	99798804:99799029:99799533:99799680:99799774:99799897,	99799534	99799680	99799652	99799652	Frame_Shift_Del	C	-	p.G93fs
LUAD	TCGA-50-6594-01	SCAPER	ENST00000324767.7,ENST00000563688.1,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76797199:76797315:76866498:76866625:76914104:76914170,	76866499	76866625	76866552	76866552	Frame_Shift_Del	C	-	p.V683fs
LUAD	TCGA-50-6595-01	LDHA	ENST00000542179.1,ENST00000430553.2,ENST00000375710.3,ENST00000540430.1,ENST00000538451.1,ENST00000545215.1,ENST00000541097.1,ENST00000422447.3,ENST00000379412.5	chr11	18425284:18425358:18426995:18427119:18428663:18428705,	18426996	18427119	18427087	18427087	Frame_Shift_Del	A	-	p.R269fs
LUAD	TCGA-50-6673-01	ABCC4	ENST00000376887.4,ENST00000431522.1,ENST00000536256.1	chr13	95816631:95816772:95818411:95818621:95822785:95822882,	95818412	95818621	95818595	95818595	Frame_Shift_Del	G	-	p.Y617fs
LUAD	TCGA-50-6673-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555171	38555180	Frame_Shift_Del	ATCACTGAAG	-	p.KSLK1571fs
LUAD	TCGA-50-7109-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106663	168106664	Frame_Shift_Del	AC	-	p.T2921fs
LUAD	TCGA-50-7109-01	SEC24C	ENST00000465076.1,ENST00000345254.4	chr10	75506387:75506474:75506562:75506762:75510865:75511001,75504126:75504195:75506562:75506762:75519379:75519552,75504157:75504195:75506562:75506762:75510865:75511001,	75506563	75506762	75506613	75506614	Frame_Shift_Ins	-	A	p.P8fs
LUAD	TCGA-50-7109-01	ZNF511	ENST00000463816.2,ENST00000361518.5	chr10	135123667:135123792:135125219:135125345:135126291:135126621,	135125220	135125345	135125341	135125342	Frame_Shift_Ins	-	AT	p.*226fs
LUAD	TCGA-50-7109-01	RHCG	ENST00000560081.1,ENST00000544600.1,ENST00000558184.1,ENST00000268122.4	chr15	90022552:90022719:90023491:90023639:90026297:90026448,	90023492	90023639	90023607	90023608	Frame_Shift_Ins	-	T	p.H185fs
LUAD	TCGA-50-8457-01	SETDB1	ENST00000368963.1	chr1	150913804:150913904:150915038:150915164:150916395:150916469,	150915039	150915164	150915140	150915141	Frame_Shift_Ins	-	C	p.P217fs
LUAD	TCGA-50-8459-01	RFC4	ENST00000433496.1	chr3	186507688:186507853:186507930:186508044:186508114:186508195,186507688:186507853:186507930:186508044:186509513:186509639,	186507931	186508044	186507965	186507966	Frame_Shift_Ins	-	CAGA	p.*321fs
LUAD	TCGA-50-8459-01	EPHB4	ENST00000492878.1,ENST00000487222.1,ENST00000477446.1,ENST00000358173.3,ENST00000360620.3	chr7	100416172:100416266:100417178:100417511:100417762:100417918,	100417179	100417511	100417234	100417234	Frame_Shift_Del	G	-	p.S414fs
LUAD	TCGA-53-7624-01	TPO	ENST00000497517.2	chr2	1488491:1488626:1497573:1497811:1520654:1520751,1488491:1488626:1497573:1497811:1507719:1507847,	1497574	1497811	1497681	1497681	Frame_Shift_Del	T	-	p.Y626fs
LUAD	TCGA-53-7624-01	RFC1	ENST00000381897.1,ENST00000418436.1,ENST00000349703.2	chr4	39322906:39322994:39324959:39325037:39328182:39328260,	39324960	39325037	39325005	39325005	Frame_Shift_Del	A	-	p.F225fs
LUAD	TCGA-53-7624-01	LCTL	ENST00000537670.1,ENST00000565875.1,ENST00000341509.5	chr15	66844380:66844507:66845321:66845596:66850059:66850221,	66845322	66845596	66845350	66845350	Frame_Shift_Del	C	-	p.G390fs
LUAD	TCGA-53-7624-01	DNAJA2	ENST00000563158.1,ENST00000317089.5	chr16	46993186:46993331:46998522:46998719:47001424:47001558,	46998523	46998719	46998591	46998591	Frame_Shift_Del	C	-	p.E236fs
LUAD	TCGA-53-7624-01	ZNF780B	ENST00000598845.1	chr19	40553312:40553377:40554576:40554703:40556230:40556284,40553312:40553380:40554576:40554703:40556230:40556284,	40554577	40554703	40554637	40554638	Frame_Shift_Ins	-	A	p.S26fs
LUAD	TCGA-53-7626-01	ACADM	ENST00000529059.1,ENST00000526129.1,ENST00000525808.1,ENST00000530953.2,ENST00000541113.1,ENST00000526930.1,ENST00000370834.5,ENST00000420607.2,ENST00000532509.1,ENST00000526196.1,ENST00000543667.1,ENST00000370841.4,ENST00000534334.1	chr1	76205664:76205795:76211490:76211599:76215103:76215203,	76211491	76211599	76211563	76211563	Frame_Shift_Del	G	-	p.V224fs
LUAD	TCGA-53-7626-01	LRP2	ENST00000263816.3	chr2	170131545:170131748:170134254:170134461:170135881:170136105,	170134255	170134461	170134449	170134450	Frame_Shift_Ins	-	A	p.F526fs
LUAD	TCGA-53-7626-01	CARD8	ENST00000518979.1,ENST00000518622.1,ENST00000359009.4	chr19	48724986:48725112:48733694:48733954:48734033:48734263,	48733695	48733954	48733883	48733883	Frame_Shift_Del	G	-	p.R283fs
LUAD	TCGA-53-7626-01	CARD8	ENST00000447740.2,ENST00000521613.1,ENST00000520753.1,ENST00000517510.1,ENST00000522773.1,ENST00000519646.1,ENST00000519940.1,ENST00000520153.1,ENST00000521415.1,ENST00000391898.3,ENST00000520015.1,ENST00000522051.1,ENST00000357778.5	chr19	48724986:48725112:48733694:48733957:48734033:48734263,	48733695	48733957	48733883	48733883	Frame_Shift_Del	G	-	p.R283fs
LUAD	TCGA-53-A4EZ-01	MLXIPL	ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3	chr7	73011194:73011262:73011511:73012043:73013855:73013996,	73011512	73012043	73011880	73011880	Frame_Shift_Del	G	-	p.P414fs
LUAD	TCGA-53-A4EZ-01	SEC23B	ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000450074.1,ENST00000262544.2	chr20	18496293:18496380:18505076:18505313:18505578:18505664,	18505077	18505313	18505277	18505277	Frame_Shift_Del	C	-	p.F189fs
LUAD	TCGA-55-1592-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-55-1592-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
LUAD	TCGA-55-1592-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
LUAD	TCGA-55-1592-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
LUAD	TCGA-55-1592-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-55-1592-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-55-1592-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
LUAD	TCGA-55-1592-01	COMMD2	ENST00000491617.1,ENST00000469896.1,ENST00000483708.1	chr3	149469189:149469272:149469996:149470074:149470164:149470237,	149469997	149470074	149470067	149470068	Frame_Shift_Ins	-	A	p.G25fs
LUAD	TCGA-55-1592-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.AG101fs
LUAD	TCGA-55-1592-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190382	17190386	Frame_Shift_Del	GATCC	-	p.KDP301fs
LUAD	TCGA-55-1592-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.R164fs
LUAD	TCGA-55-1592-01	RASA3	ENST00000389544.4,ENST00000334062.7	chr13	114795286:114795363:114817526:114817630:114839194:114839312,114806475:114806570:114817526:114817630:114839194:114839312,	114817527	114817630	114817623	114817623	Frame_Shift_Del	A	-	p.Y61fs
LUAD	TCGA-55-1592-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
LUAD	TCGA-55-1592-01	GTF2A2	ENST00000559141.1	chr15	59934412:59934461:59942867:59942963:59944404:59944525,59934412:59934461:59942867:59942963:59949604:59949674,	59942868	59942963	59942953	59942954	Frame_Shift_Ins	-	G	p.T31fs
LUAD	TCGA-55-1592-01	GTF2A2	ENST00000396064.3	chr15	59934412:59934461:59942867:59942972:59944404:59944525,59931311:59931356:59942867:59942972:59944404:59944525,	59942868	59942972	59942953	59942954	Frame_Shift_Ins	-	G	p.T31fs
LUAD	TCGA-55-1592-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328258	40328259	Frame_Shift_Ins	-	C	p.S215fs
LUAD	TCGA-55-1592-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
LUAD	TCGA-55-1592-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
LUAD	TCGA-55-1592-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.HP25fs
LUAD	TCGA-55-1592-01	OPHN1	ENST00000355520.5	chrX	67273486:67273652:67283695:67284019:67292993:67293141,	67283696	67284019	67283757	67283757	Frame_Shift_Del	G	-	p.T699fs
LUAD	TCGA-55-1592-01	CNTN5	ENST00000528682.1,ENST00000524871.1,ENST00000528727.1,ENST00000527185.1,ENST00000279463.3	chr11	99426945:99427000:99690274:99690496:99715583:99715707,	99690275	99690496	99690425	99690425	Frame_Shift_Del	G	-	p.W69fs
LUAD	TCGA-55-1592-01	GNG2	ENST00000556766.1,ENST00000554736.1,ENST00000556752.1,ENST00000556522.1	chr14	52344351:52344375:52417367:52417483:52433276:52433470,	52417368	52417483	52417413	52417413	Frame_Shift_Del	C	-	p.T6fs
LUAD	TCGA-55-1594-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.R469fs
LUAD	TCGA-55-1594-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-55-1594-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-55-1594-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.S54fs
LUAD	TCGA-55-1594-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
LUAD	TCGA-55-1594-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023980	64023981	Frame_Shift_Del	TC	-	p.KK77fs
LUAD	TCGA-55-1594-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.K304fs
LUAD	TCGA-55-1594-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971057	21971058	Frame_Shift_Ins	-	A	p.G115fs
LUAD	TCGA-55-1594-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971057	21971058	Frame_Shift_Ins	-	A	p.G115fs
LUAD	TCGA-55-1594-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.R200fs
LUAD	TCGA-55-1594-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
LUAD	TCGA-55-1594-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.HP25fs
LUAD	TCGA-55-1594-01	SPON2	ENST00000290902.5,ENST00000431380.1	chr4	1161284:1161444:1164189:1164364:1164786:1164858,	1164190	1164364	1164242	1164243	Frame_Shift_Ins	-	G	p.P253fs
LUAD	TCGA-55-1595-01	RNF14	ENST00000515613.1	chr5	141357867:141358395:141359687:141359916:141362944:141363117,141354368:141354520:141359687:141359916:141362944:141363117,141353147:141353307:141359687:141359916:141362944:141363117,	141359688	141359916	141359874	141359875	Frame_Shift_Ins	-	G	p.V341fs
LUAD	TCGA-55-1595-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LUAD	TCGA-55-1596-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-55-1596-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
LUAD	TCGA-55-1596-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.TG685fs
LUAD	TCGA-55-1596-01	CIDEC	ENST00000336832.2	chr3	9911847:9912006:9918749:9918903:9920117:9920172,	9918750	9918903	9918830	9918830	Frame_Shift_Del	G	-	p.R43fs
LUAD	TCGA-55-1596-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577143	29577144	Frame_Shift_Ins	-	G	p.R574fs
LUAD	TCGA-55-1596-01	DAGLB	ENST00000436575.1,ENST00000297056.6	chr7	6472467:6472590:6474392:6474651:6485583:6485735,6472467:6472590:6474392:6474651:6475992:6476164,	6474393	6474651	6474590	6474591	Frame_Shift_Ins	-	C	p.N161fs
LUAD	TCGA-55-1596-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.QG72fs
LUAD	TCGA-55-1596-01	MYOF	ENST00000359263.4,ENST00000371489.1,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95168543:95168672:95169329:95169496:95185827:95185915,	95169330	95169496	95169434	95169435	Frame_Shift_Ins	-	C	p.Q166fs
LUAD	TCGA-55-1596-01	CCS	ENST00000310190.4,ENST00000530961.1,ENST00000533244.1	chr11	66366586:66366724:66366929:66367107:66367959:66368020,	66366930	66367107	66366957	66366958	Frame_Shift_Ins	-	G	p.R93fs
LUAD	TCGA-55-1596-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.T539fs
LUAD	TCGA-55-1596-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559112	56559113	Frame_Shift_Ins	-	G	p.R1074fs
LUAD	TCGA-55-1596-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328258	40328259	Frame_Shift_Ins	-	C	p.S215fs
LUAD	TCGA-55-1596-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
LUAD	TCGA-55-1596-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
LUAD	TCGA-55-1596-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-55-1596-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-55-1596-01	SH3BP1	ENST00000417536.1	chr22	38049790:38049880:38051278:38051322:38051932:38052048,	38051279	38051322	38051313	38051314	Frame_Shift_Ins	-	C	p.PP576fs
LUAD	TCGA-55-1596-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
LUAD	TCGA-55-1596-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.HP25fs
LUAD	TCGA-55-1596-01	NOTUM	ENST00000409678.3,ENST00000425009.1,ENST00000477214.1	chr17	79916210:79916269:79916810:79916871:79917346:79917442,	79916811	79916871	79916813	79916814	Frame_Shift_Ins	-	A	p.S177fs
LUAD	TCGA-55-5899-01	ENPP3	ENST00000414305.1,ENST00000357639.3,ENST00000358229.5	chr6	132059170:132059303:132061363:132061520:132067925:132068096,	132061364	132061520	132061443	132061444	Frame_Shift_Del	CC	-	p.P794fs
LUAD	TCGA-55-5899-01	PROSER2	ENST00000277570.5	chr10	11865396:11865469:11893995:11894214:11908529:11908646,	11893996	11894214	11894129	11894129	Frame_Shift_Del	C	-	p.S18fs
LUAD	TCGA-55-5899-01	PTPRO	ENST00000445537.2,ENST00000281171.4,ENST00000442921.2	chr12	15710388:15710457:15713126:15713210:15718526:15718562,	15713127	15713210	15713185	15713185	Frame_Shift_Del	C	-	p.L897fs
LUAD	TCGA-55-6712-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574012	7574012	Frame_Shift_Del	C	-	p.E339fs
LUAD	TCGA-55-6968-01	DNAH1	ENST00000486752.1,ENST00000420323.2,ENST00000497875.1	chr3	52356424:52356791:52357823:52357896:52360155:52360330,	52357824	52357896	52357838	52357838	Frame_Shift_Del	C	-	p.G116fs
LUAD	TCGA-55-6968-01	TECPR1	ENST00000379795.3,ENST00000447648.2	chr7	97873882:97874005:97874196:97874379:97875233:97875435,	97874197	97874379	97874250	97874250	Frame_Shift_Del	C	-	p.E119fs
LUAD	TCGA-55-6968-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576910	7576910	Frame_Shift_Del	G	-	p.T312fs
LUAD	TCGA-55-6969-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093063	160093063	Frame_Shift_Del	C	-	p.P82fs
LUAD	TCGA-55-6969-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000478340.1,ENST00000467020.1,ENST00000464112.1	chr6	35437212:35437306:35437955:35438128:35438356:35438417,	35437956	35438128	35438117	35438118	Frame_Shift_Ins	-	A	p.N158fs
LUAD	TCGA-55-6969-01	TNFRSF19	ENST00000382263.3,ENST00000248484.4,ENST00000403372.2	chr13	24242118:24242221:24242830:24243236:24247510:24247638,	24242831	24243236	24243135	24243136	Frame_Shift_Ins	-	T	p.G382fs
LUAD	TCGA-55-6969-01	TMEM255A	ENST00000371352.1,ENST00000309720.5,ENST00000371369.4	chrX	119402217:119402242:119410739:119410902:119418981:119419070,	119410740	119410902	119410798	119410799	Frame_Shift_Ins	-	T	p.C206fs
LUAD	TCGA-55-6972-01	TOP2B	ENST00000413971.1,ENST00000264331.4,ENST00000540199.1,ENST00000435706.2,ENST00000542520.1	chr3	25651058:25651203:25654005:25654200:25656695:25656779,	25654006	25654200	25654107	25654107	Frame_Shift_Del	G	-	p.Q1224fs
LUAD	TCGA-55-6975-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000356327.5,ENST00000481505.1,ENST00000342215.6	chr3	171410121:171410232:171417534:171417616:171426544:171426628,	171417535	171417616	171417564	171417565	Frame_Shift_Ins	-	C	p.V400fs
LUAD	TCGA-55-6975-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577022	7577025	Frame_Shift_Del	GCTT	-	p.KR305fs
LUAD	TCGA-55-6979-01	TVP23B	ENST00000574294.1	chr17	18692675:18692748:18694208:18694273:18700891:18700981,	18694209	18694273	18694214	18694215	Frame_Shift_Del	CA	-	p.P34fs
LUAD	TCGA-55-6979-01	TVP23B	ENST00000575261.1,ENST00000574226.1,ENST00000307767.8,ENST00000476139.1,ENST00000581733.1	chr17	18692675:18692748:18694208:18694353:18700891:18700981,	18694209	18694353	18694214	18694215	Frame_Shift_Del	CA	-	p.P34fs
LUAD	TCGA-55-6982-01	PAQR6	ENST00000340183.5,ENST00000491107.1	chr1	156214564:156214702:156214932:156215029:156215325:156215387,156214564:156214702:156214932:156215029:156215572:156215586,	156214933	156215029	156214968	156214969	Frame_Shift_Ins	-	ATAGGCT	p.YI85fs
LUAD	TCGA-55-6982-01	PAQR6	ENST00000480773.1	chr1	156214564:156214702:156214932:156215068:156215572:156215586,	156214933	156215068	156214968	156214969	Frame_Shift_Ins	-	ATAGGCT	p.YI85fs
LUAD	TCGA-55-6983-01	SCIMP	ENST00000574297.1,ENST00000574081.1	chr17	5118219:5118293:5124581:5124645:5126648:5126751,5118219:5118293:5124581:5124645:5126627:5126751,	5124582	5124645	5124612	5124612	Frame_Shift_Del	T	-	p.H60fs
LUAD	TCGA-55-6984-01	SLC41A3	ENST00000513723.1	chr3	125769785:125769893:125786789:125787089:125802935:125802952,125769785:125769893:125786789:125787089:125820271:125820398,125752487:125752521:125786789:125787089:125802935:125802952,125775200:125775356:125786789:125787089:125802935:125802952,	125786790	125787089	125786853	125786853	Frame_Shift_Del	G	-	p.T70fs
LUAD	TCGA-55-6985-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836883	82836884	Frame_Shift_Ins	-	C	p.H2688fs
LUAD	TCGA-55-6985-01	TYR	ENST00000263321.5	chr11	88924369:88924586:88960990:88961138:89017940:89018122,	88960991	88961138	88961080	88961081	Frame_Shift_Ins	-	A	p.G376fs
LUAD	TCGA-55-6986-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125651	47125651	Frame_Shift_Del	G	-	p.P1873fs
LUAD	TCGA-55-6987-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631502	55631503	Frame_Shift_Ins	-	T	p.F278fs
LUAD	TCGA-55-6987-01	GAA	ENST00000572080.1,ENST00000302262.3,ENST00000390015.3	chr17	78084800:78084824:78085781:78085899:78086376:78086510,	78085782	78085899	78085790	78085790	Frame_Shift_Del	G	-	p.G550fs
LUAD	TCGA-55-7227-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981157	201981164	Frame_Shift_Del	AAGTGGAG	-	p.QVE79fs
LUAD	TCGA-55-7281-01	VCAM1	ENST00000347652.2	chr1	101190179:101190446:101196753:101197074:101197973:101198240,	101196754	101197074	101196902	101196903	Frame_Shift_Ins	-	T	p.DF451fs
LUAD	TCGA-55-7281-01	AKNAD1	ENST00000369995.3,ENST00000370001.3,ENST00000357393.4	chr1	109377068:109377150:109377550:109377678:109380171:109380328,	109377551	109377678	109377596	109377596	Frame_Shift_Del	G	-	p.P540fs
LUAD	TCGA-55-7281-01	ACOT12	ENST00000307624.3	chr5	80628295:80628424:80631586:80631720:80638490:80638574,	80631587	80631720	80631600	80631600	Frame_Shift_Del	C	-	p.D417fs
LUAD	TCGA-55-7281-01	ITGA2B	ENST00000353281.4,ENST00000592075.1,ENST00000591990.1,ENST00000262407.5,ENST00000592253.1,ENST00000589645.1,ENST00000592944.1	chr17	42461905:42461953:42462315:42462444:42462531:42462563,	42462316	42462444	42462399	42462399	Frame_Shift_Del	C	-	p.R239fs
LUAD	TCGA-55-7281-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436961	72436961	Frame_Shift_Del	T	-	p.V394fs
LUAD	TCGA-55-7281-01	KCTD1	ENST00000417602.1,ENST00000317932.7,ENST00000580059.1,ENST00000580191.1,ENST00000408011.3,ENST00000580638.1,ENST00000579973.1	chr18	24035855:24035865:24039583:24039889:24056478:24056623,	24039584	24039889	24039787	24039787	Frame_Shift_Del	T	-	p.R746fs
LUAD	TCGA-55-7283-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911171	29911171	Frame_Shift_Del	G	-	p.W157fs
LUAD	TCGA-55-7283-01	MED25	ENST00000312865.6	chr19	50333078:50333205:50333344:50333475:50333767:50333855,	50333345	50333475	50333452	50333452	Frame_Shift_Del	C	-	p.P267fs
LUAD	TCGA-55-7570-01	CEP350	ENST00000367607.3,ENST00000357434.2	chr1	179956377:179956421:179959641:179959756:179961196:179961356,	179959642	179959756	179959740	179959740	Frame_Shift_Del	A	-	p.R73fs
LUAD	TCGA-55-7570-01	SNX4	ENST00000536067.1,ENST00000251775.4,ENST00000471751.1	chr3	125176109:125176209:125179614:125179704:125188297:125188363,	125179615	125179704	125179630	125179631	Frame_Shift_Ins	-	A	p.C310fs
LUAD	TCGA-55-7570-01	ACOX3	ENST00000503233.1,ENST00000413009.2,ENST00000356406.5	chr4	8416580:8416655:8417492:8417726:8418104:8418262,	8417493	8417726	8417700	8417700	Frame_Shift_Del	A	-	p.N57fs
LUAD	TCGA-55-7570-01	PSTK	ENST00000368887.3,ENST00000497219.1	chr10	124746384:124746478:124746849:124747020:124749689:124749851,	124746850	124747020	124747013	124747013	Frame_Shift_Del	G	-	p.T347fs
LUAD	TCGA-55-7570-01	PSTK	ENST00000405485.1	chr10	124742805:124742986:124745815:124747020:124749689:124749851,	124745816	124747020	124747013	124747013	Frame_Shift_Del	G	-	p.T347fs
LUAD	TCGA-55-7570-01	PHKA2	ENST00000379942.4,ENST00000473739.1	chrX	18915280:18915451:18917290:18917344:18918787:18918817,	18917291	18917344	18917333	18917334	Frame_Shift_Ins	-	A	p.G1023fs
LUAD	TCGA-55-7573-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000367284.5	chr1	201982309:201982426:201982956:201983152:201984336:201984922,	201982957	201983152	201983060	201983060	Frame_Shift_Del	C	-	p.F303fs
LUAD	TCGA-55-7576-01	DARS	ENST00000264161.4,ENST00000537273.1	chr2	136678022:136678170:136680353:136680488:136681956:136682068,	136680354	136680488	136680448	136680449	Frame_Shift_Ins	-	T	p.F239fs
LUAD	TCGA-55-7576-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
LUAD	TCGA-55-7576-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58830971	58830972	Frame_Shift_Ins	-	A	p.K722fs
LUAD	TCGA-55-7576-01	TMC2	ENST00000496948.1,ENST00000358864.1	chr20	2591064:2591244:2592836:2592986:2593839:2593872,	2592837	2592986	2592980	2592980	Frame_Shift_Del	G	-	p.V579fs
LUAD	TCGA-55-7724-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527502	29527503	Frame_Shift_Del	AG	-	p.TE317fs
LUAD	TCGA-55-7725-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157469810	157469811	Frame_Shift_Ins	-	G	p.P869fs
LUAD	TCGA-55-7725-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561858	32561858	Frame_Shift_Del	A	-	p.V661fs
LUAD	TCGA-55-7728-01	FDXR	ENST00000544854.1,ENST00000579543.1,ENST00000583917.1,ENST00000455107.2,ENST00000577509.1,ENST00000578473.1,ENST00000413947.2,ENST00000579893.1,ENST00000293195.5,ENST00000442102.2,ENST00000581530.1,ENST00000580492.1,ENST00000581969.1,ENST00000579482.1	chr17	72862330:72862366:72862567:72862690:72862905:72862998,	72862568	72862690	72862664	72862665	Frame_Shift_Del	CG	-	p.T55fs
LUAD	TCGA-55-7728-01	FDXR	ENST00000583881.1,ENST00000582944.1,ENST00000581219.1	chr17	72862330:72862366:72862567:72862666:72862905:72862998,	72862568	72862666	72862664	72862665	Frame_Shift_Del	CG	-	p.T55fs
LUAD	TCGA-55-7816-01	CEP128	ENST00000281129.3,ENST00000554502.1,ENST00000555265.1	chr14	81244225:81244390:81251238:81251889:81259103:81259454,	81251239	81251889	81251876	81251876	Frame_Shift_Del	T	-	p.K525fs
LUAD	TCGA-55-7816-01	ALG13	ENST00000394780.3,ENST00000470971.1	chrX	110979941:110980107:110987895:110988132:110996017:110996058,	110987896	110988132	110988002	110988002	Frame_Shift_Del	T	-	p.P945fs
LUAD	TCGA-55-7903-01	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000451855.1,ENST00000372249.1,ENST00000357304.4	chr9	134353130:134353336:134353860:134354006:134354638:134354780,	134353861	134354006	134353948	134353948	Frame_Shift_Del	C	-	p.T1567fs
LUAD	TCGA-55-7903-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579583	7579583	Frame_Shift_Del	A	-	p.L35fs
LUAD	TCGA-55-7907-01	CROT	ENST00000419147.2,ENST00000331536.3	chr7	87022045:87022139:87022263:87022383:87027839:87028797,	87022264	87022383	87022321	87022321	Frame_Shift_Del	G	-	p.Q552fs
LUAD	TCGA-55-7907-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118495649:118495775:118498020:118499366:118501923:118502196,	118498021	118499366	118498054	118498054	Frame_Shift_Del	C	-	p.T172fs
LUAD	TCGA-55-7907-01	CA11	ENST00000084798.4	chr19	49143351:49143537:49147683:49147826:49148659:49148734,	49147684	49147826	49147712	49147712	Frame_Shift_Del	G	-	p.P86fs
LUAD	TCGA-55-7907-01	KLK6	ENST00000391808.1,ENST00000594641.1,ENST00000376851.3,ENST00000597379.1,ENST00000310157.2,ENST00000599881.1,ENST00000456750.2,ENST00000599690.1	chr19	51462413:51462572:51464999:51465136:51466557:51466681,	51465000	51465136	51465069	51465069	Frame_Shift_Del	G	-	p.A171fs
LUAD	TCGA-55-7907-01	MPPED1	ENST00000414469.2	chr22	43808019:43808164:43830953:43831135:43870615:43870841,	43830954	43831135	43831041	43831042	Frame_Shift_Ins	-	A	p.P105fs
LUAD	TCGA-55-7910-01	FBXL19	ENST00000471231.2,ENST00000562319.1,ENST00000427128.1,ENST00000380310.2,ENST00000338343.4	chr16	30938893:30938980:30939065:30939284:30939787:30939820,	30939066	30939284	30939203	30939204	Frame_Shift_Ins	-	C	p.GP182fs
LUAD	TCGA-55-7910-01	APCDD1	ENST00000582723.1	chr18	10454978:10455036:10471526:10472058:10485458:10485500,	10471527	10472058	10471699	10471699	Frame_Shift_Del	G	-	p.G140fs
LUAD	TCGA-55-7911-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1337284:1337488:1339572:1339675:1363333:1363518,	1339573	1339675	1339578	1339579	Frame_Shift_Ins	-	T	p.G222fs
LUAD	TCGA-55-7911-01	IGF2R	ENST00000356956.1	chr6	160461591:160461756:160464179:160464320:160465545:160465689,	160464180	160464320	160464274	160464277	Frame_Shift_Del	AGGC	-	p.EG525fs
LUAD	TCGA-55-7911-01	FHOD3	ENST00000587493.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34273171:34273386:34289057:34289354:34297794:34297934,	34289058	34289354	34289064	34289064	Frame_Shift_Del	C	-	p.A573fs
LUAD	TCGA-55-7913-01	CD9	ENST00000540891.1,ENST00000382515.2,ENST00000481267.1,ENST00000382519.4,ENST00000009180.4,ENST00000382518.1	chr12	6342577:6342652:6344394:6344493:6344641:6344731,	6344395	6344493	6344399	6344399	Frame_Shift_Del	T	-	p.I118fs
LUAD	TCGA-55-7913-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
LUAD	TCGA-55-7913-01	C21orf58	ENST00000397679.1,ENST00000397680.1,ENST00000397682.3,ENST00000397683.1	chr21	47731369:47731481:47734629:47734963:47735387:47735461,	47734630	47734963	47734799	47734799	Frame_Shift_Del	A	-	p.L41fs
LUAD	TCGA-55-7914-01	MTIF2	ENST00000394600.3,ENST00000263629.4,ENST00000403721.1	chr2	55463757:55463956:55464423:55464564:55467146:55467281,	55464424	55464564	55464460	55464461	Frame_Shift_Ins	-	T	p.N*658fs
LUAD	TCGA-55-7914-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577058	7577058	Frame_Shift_Del	C	-	p.E294fs
LUAD	TCGA-55-7994-01	TXLNA	ENST00000373609.1,ENST00000373610.3	chr1	32646842:32647178:32650125:32650217:32653554:32653725,	32650126	32650217	32650175	32650176	Frame_Shift_Ins	-	T	p.G186fs
LUAD	TCGA-55-7994-01	IQGAP3	ENST00000491900.1,ENST00000361170.2	chr1	156521765:156521887:156524026:156524184:156526324:156526485,	156524027	156524184	156524106	156524106	Frame_Shift_Del	G	-	p.R457fs
LUAD	TCGA-55-7994-01	FCRL5	ENST00000497286.1,ENST00000361835.3,ENST00000356953.4	chr1	157490806:157491082:157494068:157494347:157497406:157497685,	157494069	157494347	157494145	157494146	Frame_Shift_Ins	-	T	p.L721fs
LUAD	TCGA-55-7994-01	PROX1	ENST00000366958.4,ENST00000498508.2,ENST00000261454.4,ENST00000435016.1	chr1	214178509:214178615:214184863:214185058:214208991:214209760,	214184864	214185058	214184965	214184966	Frame_Shift_Ins	-	G	p.EG645fs
LUAD	TCGA-55-7994-01	SNAP47	ENST00000366760.1	chr1	227923136:227923200:227946695:227947186:227954659:227954784,227916407:227916487:227946695:227947186:227954659:227954784,	227946696	227947186	227946760	227946760	Frame_Shift_Del	C	-	p.P233fs
LUAD	TCGA-55-7994-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210560409	210560409	Frame_Shift_Del	A	-	p.E1172fs
LUAD	TCGA-55-7994-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210560409	210560409	Frame_Shift_Del	A	-	p.E1172fs
LUAD	TCGA-55-7994-01	DHX15	ENST00000336812.4,ENST00000512903.1,ENST00000508032.1	chr4	24529382:24529664:24531223:24531393:24534486:24534573,	24531224	24531393	24531262	24531263	Frame_Shift_Ins	-	T	p.K744fs
LUAD	TCGA-55-7994-01	ZNRD1	ENST00000463141.1	chr6	30029291:30029446:30030000:30030110:30032449:30032686,	30030001	30030110	30030076	30030076	Frame_Shift_Del	G	-	p.G108fs
LUAD	TCGA-55-7994-01	ENPP1	ENST00000360971.2,ENST00000459624.1,ENST00000513998.1	chr6	132193209:132193241:132194062:132194190:132195407:132195477,	132194063	132194190	132194180	132194181	Frame_Shift_Ins	-	G	p.T519fs
LUAD	TCGA-55-7994-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143095772	143095772	Frame_Shift_Del	C	-	p.E420fs
LUAD	TCGA-55-7994-01	PXDNL	ENST00000356297.4,ENST00000543296.1	chr8	52339205:52339318:52359563:52359722:52361561:52361678,	52359564	52359722	52359646	52359647	Frame_Shift_Ins	-	T	p.R481fs
LUAD	TCGA-55-7994-01	FIBP	ENST00000533045.1,ENST00000357519.4,ENST00000338369.2	chr11	65652801:65653292:65653792:65653893:65655070:65655197,65653004:65653134:65653792:65653893:65655070:65655197,	65653793	65653893	65653836	65653836	Frame_Shift_Del	C	-	p.D157fs
LUAD	TCGA-55-7994-01	NECAB2	ENST00000565691.1,ENST00000305202.4	chr16	84031856:84031922:84034328:84034406:84035429:84035521,	84034329	84034406	84034361	84034361	Frame_Shift_Del	C	-	p.T249fs
LUAD	TCGA-55-7995-01	SOAT1	ENST00000367619.3,ENST00000535686.1,ENST00000539888.1,ENST00000540564.1	chr1	179319430:179319566:179320451:179320597:179322719:179322942,	179320452	179320597	179320525	179320526	Frame_Shift_Ins	-	T	p.G509fs
LUAD	TCGA-55-7995-01	WDR75	ENST00000436347.1,ENST00000427960.1,ENST00000314761.4	chr2	190334069:190334165:190334801:190334971:190335544:190335604,	190334802	190334971	190334847	190334848	Frame_Shift_Ins	-	G	p.R622fs
LUAD	TCGA-55-7995-01	BNIP1	ENST00000231668.9,ENST00000352523.6	chr5	172573868:172573961:172578568:172578697:172581324:172581416,	172578569	172578697	172578611	172578611	Frame_Shift_Del	T	-	p.F76fs
LUAD	TCGA-55-7995-01	CACNA2D1	ENST00000356860.3	chr7	81611882:81611943:81612629:81612650:81613950:81614027,	81612630	81612650	81612644	81612644	Frame_Shift_Del	T	-	p.K627fs
LUAD	TCGA-55-8085-01	COL12A1	ENST00000345356.6,ENST00000425443.2,ENST00000511023.1,ENST00000416123.2,ENST00000322507.8	chr6	75801205:75801241:75804823:75804895:75806968:75807022,	75804824	75804895	75804857	75804857	Frame_Shift_Del	C	-	p.G2872fs
LUAD	TCGA-55-8087-01	XPNPEP3	ENST00000357137.4,ENST00000544094.1,ENST00000428799.1	chr22	41277773:41278181:41282316:41282519:41303590:41303653,	41282317	41282519	41282374	41282375	Frame_Shift_Ins	-	T	p.*216fs
LUAD	TCGA-55-8089-01	FCRLA	ENST00000367953.3,ENST00000367959.2	chr1	161677084:161677133:161680549:161680702:161680997:161681262,161677084:161677133:161680549:161680702:161681723:161682008,161677084:161677133:161680549:161680702:161682874:161683242,161680267:161680282:161680549:161680702:161680997:161681262,	161680550	161680702	161680614	161680614	Frame_Shift_Del	G	-	p.T71fs
LUAD	TCGA-55-8089-01	FCRLA	ENST00000465403.1	chr1	161680267:161680282:161680549:161680653:161680997:161681262,	161680550	161680653	161680614	161680614	Frame_Shift_Del	G	-	p.T71fs
LUAD	TCGA-55-8089-01	OSBPL6	ENST00000477097.1,ENST00000357080.4,ENST00000359685.3,ENST00000409045.3,ENST00000392505.2,ENST00000409631.1,ENST00000190611.4,ENST00000315022.2	chr2	179192982:179193105:179196278:179196332:179197367:179197428,	179196279	179196332	179196308	179196308	Frame_Shift_Del	A	-	p.L116fs
LUAD	TCGA-55-8089-01	ARHGAP21	ENST00000396432.2,ENST00000486374.1	chr10	24878199:24878231:24880153:24880259:24880570:24880612,	24880154	24880259	24880167	24880168	Frame_Shift_Ins	-	G	p.R1379fs
LUAD	TCGA-55-8089-01	ALDOA	ENST00000569545.1,ENST00000395248.1,ENST00000563060.2,ENST00000566897.1,ENST00000412304.2,ENST00000563987.1,ENST00000338110.5,ENST00000562168.1,ENST00000569798.1,ENST00000566846.1,ENST00000564546.1,ENST00000395240.3,ENST00000564595.2,ENST00000564688.1,ENST00000562679.1	chr16	30078823:30078982:30079966:30080021:30080138:30080213,	30079967	30080021	30079983	30079984	Frame_Shift_Ins	-	CC	p.A114fs
LUAD	TCGA-55-8089-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248731	44248732	Frame_Shift_Ins	-	A	p.C260fs
LUAD	TCGA-55-8091-01	SCRIB	ENST00000320476.3	chr8	144895987:144896066:144896170:144896288:144897383:144897549,	144896171	144896288	144896281	144896281	Frame_Shift_Del	A	-	p.F56fs
LUAD	TCGA-55-8092-01	FABP4	ENST00000522659.1	chr8	82391648:82391750:82392660:82392833:82395333:82395468,	82392661	82392833	82392704	82392704	Frame_Shift_Del	C	-	p.G68fs
LUAD	TCGA-55-8092-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	134125834:134125847:134128852:134128960:134145713:134145904,134125834:134125847:134128852:134128960:134144055:134144190,	134128853	134128960	134128909	134128909	Frame_Shift_Del	C	-	p.A2604fs
LUAD	TCGA-55-8094-01	TBC1D9	ENST00000442267.2	chr4	141590787:141590958:141591873:141592080:141598047:141598255,	141591874	141592080	141592064	141592064	Frame_Shift_Del	T	-	p.K359fs
LUAD	TCGA-55-8094-01	POLR3A	ENST00000372371.3	chr10	79767459:79767624:79769294:79769433:79769621:79769749,	79769295	79769433	79769363	79769364	Frame_Shift_Del	CT	-	p.R614fs
LUAD	TCGA-55-8094-01	BNIP2	ENST00000267859.3,ENST00000415213.2,ENST00000607373.1,ENST00000560458.1	chr15	59970247:59970286:59971790:59971967:59972439:59972495,	59971791	59971967	59971851	59971851	Frame_Shift_Del	C	-	p.E200fs
LUAD	TCGA-55-8094-01	ANXA2	ENST00000558132.1	chr15	60649392:60649435:60653139:60653253:60656627:60656722,60649392:60649435:60653139:60653253:60678226:60678285,	60653140	60653253	60653163	60653163	Frame_Shift_Del	A	-	p.S112fs
LUAD	TCGA-55-8094-01	ANXA2	ENST00000558503.1	chr15	60649392:60649435:60653129:60653253:60656627:60656722,	60653130	60653253	60653163	60653163	Frame_Shift_Del	A	-	p.S112fs
LUAD	TCGA-55-8096-01	ELMSAN1	ENST00000451078.1,ENST00000476562.1,ENST00000435371.1,ENST00000423556.1,ENST00000394071.2,ENST00000286523.5	chr14	74186085:74186204:74187999:74188212:74189400:74189550,	74188000	74188212	74188044	74188044	Frame_Shift_Del	C	-	p.A967fs
LUAD	TCGA-55-8096-01	LRCH2	ENST00000538422.1,ENST00000317135.8	chrX	114384584:114384633:114391164:114391230:114398238:114398346,	114391165	114391230	114391224	114391224	Frame_Shift_Del	A	-	p.L490fs
LUAD	TCGA-55-8097-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000454282.1	chr5	72189203:72189362:72189442:72189530:72192284:72192383,	72189443	72189530	72189463	72189463	Frame_Shift_Del	A	-	p.R692fs
LUAD	TCGA-55-8097-01	NPC2	ENST00000556009.1,ENST00000238633.2,ENST00000555619.1,ENST00000434013.2,ENST00000557510.1,ENST00000553490.1	chr14	74947413:74947482:74951117:74951290:74953031:74953139,	74951118	74951290	74951146	74951147	Frame_Shift_Ins	-	GG	p.T112fs
LUAD	TCGA-55-8203-01	NUDT12	ENST00000507423.1,ENST00000230792.2	chr5	102890440:102890554:102891631:102891799:102894579:102895169,	102891632	102891799	102891701	102891702	Frame_Shift_Ins	-	A	p.*E298fs
LUAD	TCGA-55-8204-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967357	Frame_Shift_Ins	-	A	p.*28fs
LUAD	TCGA-55-8204-01	ST3GAL6	ENST00000460774.1,ENST00000469105.1,ENST00000483910.1,ENST00000265261.6,ENST00000486249.1,ENST00000497008.1	chr3	98451318:98451376:98487273:98487373:98489722:98489784,	98487274	98487373	98487355	98487355	Frame_Shift_Del	G	-	p.W24fs
LUAD	TCGA-55-8205-01	CHAT	ENST00000466590.2,ENST00000339797.1,ENST00000455728.2,ENST00000351556.3,ENST00000337653.2,ENST00000395559.2,ENST00000395562.2	chr10	50833518:50833699:50835653:50835831:50854550:50854720,	50835654	50835831	50835698	50835698	Frame_Shift_Del	G	-	p.E244fs
LUAD	TCGA-55-8205-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1	chr11	47859096:47859175:47861394:47861617:47861929:47862140,	47861395	47861617	47861587	47861588	Frame_Shift_Ins	-	TGAC	p.I186fs
LUAD	TCGA-55-8207-01	SFTPB	ENST00000519937.2,ENST00000409383.1,ENST00000393822.3,ENST00000342375.3,ENST00000428225.1	chr2	85892728:85892917:85893739:85893865:85894228:85894240,	85893740	85893865	85893768	85893769	Frame_Shift_Ins	-	G	p.G134fs
LUAD	TCGA-55-8207-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177034068	177034069	Frame_Shift_Ins	-	T	p.E76fs
LUAD	TCGA-55-8207-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000376237.4,ENST00000487245.1	chr6	31237742:31237862:31237986:31238262:31238849:31239108,	31237987	31238262	31238092	31238092	Frame_Shift_Del	T	-	p.T264fs
LUAD	TCGA-55-8208-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088681	27088682	Frame_Shift_Ins	-	C	p.P764fs
LUAD	TCGA-55-8208-01	DISC1	ENST00000366633.3,ENST00000295051.7,ENST00000535944.1,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000537876.1,ENST00000539444.1,ENST00000422590.2,ENST00000366637.3	chr1	231837700:231837770:231885671:231885822:231902885:231903015,	231885672	231885822	231885769	231885769	Frame_Shift_Del	G	-	p.L405fs
LUAD	TCGA-55-8299-01	GLG1	ENST00000205061.5,ENST00000422840.2,ENST00000567951.1,ENST00000562090.1,ENST00000565474.1,ENST00000447066.2	chr16	74530526:74530542:74537428:74537644:74542736:74542823,	74537429	74537644	74537634	74537635	Frame_Shift_Ins	-	AT	p.C190fs
LUAD	TCGA-55-8302-01	CCDC88A	ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000263630.8	chr2	55576653:55576735:55582714:55582887:55589443:55589584,	55582715	55582887	55582851	55582851	Frame_Shift_Del	G	-	p.H222fs
LUAD	TCGA-55-8302-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104577	168104577	Frame_Shift_Del	G	-	p.M2225fs
LUAD	TCGA-55-8302-01	SGCB	ENST00000381431.5,ENST00000535450.1	chr4	52888224:52890326:52894133:52894265:52894895:52895087,	52894134	52894265	52894182	52894183	Frame_Shift_Ins	-	A	p.R235fs
LUAD	TCGA-55-8302-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50090040:50090166:50090686:50091251:50092815:50092866,	50090687	50091251	50090715	50090715	Frame_Shift_Del	G	-	p.G298fs
LUAD	TCGA-55-8302-01	THSD7A	ENST00000408005.2,ENST00000423059.4	chr7	11416196:11416284:11418696:11418907:11419256:11419339,	11418697	11418907	11418736	11418737	Frame_Shift_Ins	-	TGCTG	p.T1588fs
LUAD	TCGA-55-8302-01	MCU	ENST00000536019.1,ENST00000604679.1,ENST00000357157.6,ENST00000604372.1,ENST00000605597.1,ENST00000373053.3	chr10	74594116:74594186:74618934:74619105:74620180:74620285,	74618935	74619105	74618994	74618995	Frame_Shift_Ins	-	T	p.*45fs
LUAD	TCGA-55-8302-01	RPS6KA4	ENST00000528057.1,ENST00000334205.4,ENST00000528355.1,ENST00000530504.1	chr11	64137170:64137365:64137696:64137856:64138034:64138198,	64137697	64137856	64137852	64137852	Frame_Shift_Del	C	-	p.V644fs
LUAD	TCGA-55-8302-01	CTTN	ENST00000376561.3,ENST00000301843.8,ENST00000529736.1,ENST00000533931.1,ENST00000538675.1,ENST00000393747.2,ENST00000346329.3	chr11	70275227:70275305:70277296:70277386:70279206:70279384,	70277297	70277386	70277324	70277324	Frame_Shift_Del	C	-	p.P403fs
LUAD	TCGA-55-8302-01	HYDIN	ENST00000393567.2	chr16	70916562:70916798:70917822:70918027:70923489:70923607,	70917823	70918027	70917924	70917924	Frame_Shift_Del	C	-	p.G3293fs
LUAD	TCGA-55-8506-01	ACOT7	ENST00000418124.1,ENST00000377860.4,ENST00000361521.4	chr1	6399492:6399649:6409808:6409926:6453316:6453421,	6409809	6409926	6409878	6409878	Frame_Shift_Del	C	-	p.G64fs
LUAD	TCGA-55-8506-01	CDC7	ENST00000428239.1,ENST00000234626.6,ENST00000430031.2	chr1	91978683:91978864:91979504:91979600:91980375:91980554,	91979505	91979600	91979538	91979539	Frame_Shift_Ins	-	T	p.F286fs
LUAD	TCGA-55-8506-01	CTSK	ENST00000271651.3,ENST00000443913.1	chr1	150778336:150778492:150778577:150778700:150779161:150779244,	150778578	150778700	150778662	150778663	Frame_Shift_Ins	-	T	p.T53fs
LUAD	TCGA-55-8506-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
LUAD	TCGA-55-8506-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
LUAD	TCGA-55-8506-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
LUAD	TCGA-55-8506-01	GBA	ENST00000427500.3	chr1	155208354:155208441:155209676:155209868:155210420:155210508,	155209677	155209868	155209780	155209781	Frame_Shift_Ins	-	G	p.H68fs
LUAD	TCGA-55-8506-01	ADSS	ENST00000366535.3	chr1	244587622:244587689:244595846:244595897:244600126:244600195,	244595847	244595897	244595876	244595877	Frame_Shift_Ins	-	T	p.A126fs
LUAD	TCGA-55-8506-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645459	215645459	Frame_Shift_Del	T	-	p.N380fs
LUAD	TCGA-55-8506-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661315	230661315	Frame_Shift_Del	A	-	p.S1196fs
LUAD	TCGA-55-8506-01	FXR1	ENST00000357559.4,ENST00000491062.1,ENST00000445140.2,ENST00000468861.1,ENST00000472339.1,ENST00000480918.1,ENST00000475315.1,ENST00000305586.7	chr3	180669117:180669256:180671549:180671628:180675606:180675716,	180671550	180671628	180671564	180671564	Frame_Shift_Del	A	-	p.V272fs
LUAD	TCGA-55-8506-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951317	102951317	Frame_Shift_Del	A	-	p.K585fs
LUAD	TCGA-55-8506-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114276131	114276131	Frame_Shift_Del	G	-	p.Q2119fs
LUAD	TCGA-55-8506-01	MATR3	ENST00000510056.1,ENST00000394805.3	chr5	138614739:138614818:138642927:138644016:138650363:138650425,138629141:138629264:138642927:138644016:138650363:138650425,138629438:138629494:138642927:138644016:138650363:138650425,	138642928	138644016	138643878	138643878	Frame_Shift_Del	C	-	p.G258fs
LUAD	TCGA-55-8506-01	MATR3	ENST00000504045.1	chr5	138629406:138629461:138642929:138644016:138650363:138650425,	138642930	138644016	138643878	138643878	Frame_Shift_Del	C	-	p.G258fs
LUAD	TCGA-55-8506-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43010811:43010918:43011185:43011368:43012489:43012623,	43011186	43011368	43011247	43011250	Frame_Shift_Del	GTGA	-	p.TH1181fs
LUAD	TCGA-55-8506-01	ATG9B	ENST00000494791.1,ENST00000466157.1,ENST00000473409.1,ENST00000377974.2,ENST00000605952.1,ENST00000486407.1,ENST00000444312.1,ENST00000605938.1,ENST00000473134.1	chr7	150718274:150718416:150720131:150720293:150720531:150720596,	150720132	150720293	150720172	150720172	Frame_Shift_Del	G	-	p.L261fs
LUAD	TCGA-55-8506-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
LUAD	TCGA-55-8506-01	MS4A6A	ENST00000412309.2,ENST00000528851.1,ENST00000530179.1,ENST00000530839.1,ENST00000420732.2,ENST00000529054.1,ENST00000323961.3	chr11	59945732:59945789:59947303:59947438:59949053:59949139,	59947304	59947438	59947304	59947304	Frame_Shift_Del	A	-	p.F94fs
LUAD	TCGA-55-8506-01	LTBP3	ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000526825.1,ENST00000530426.1	chr11	65320634:65320727:65320895:65321001:65321171:65321198,	65320896	65321001	65320986	65320986	Frame_Shift_Del	G	-	p.L294fs
LUAD	TCGA-55-8506-01	RELA	ENST00000525658.1,ENST00000529389.1,ENST00000406246.3,ENST00000533546.1,ENST00000532999.1,ENST00000531484.1,ENST00000308639.9,ENST00000525693.1	chr11	65425900:65425970:65426188:65426293:65427136:65427214,	65426189	65426293	65426244	65426245	Frame_Shift_Del	AG	-	p.S203fs
LUAD	TCGA-55-8506-01	PCSK7	ENST00000540028.1,ENST00000534529.1,ENST00000320934.3,ENST00000527037.1	chr11	117078685:117078780:117079612:117079769:117089181:117089284,	117079613	117079769	117079625	117079626	Frame_Shift_Ins	-	G	p.Q560fs
LUAD	TCGA-55-8506-01	PCSK7	ENST00000533135.1	chr11	117078685:117078780:117079612:117079762:117089181:117089284,	117079613	117079762	117079625	117079626	Frame_Shift_Ins	-	G	p.Q560fs
LUAD	TCGA-55-8506-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018468	134018468	Frame_Shift_Del	G	-	p.G248fs
LUAD	TCGA-55-8506-01	CLEC4A	ENST00000360500.3	chr12	8278156:8278273:8281859:8281958:8288180:8288332,8276507:8276556:8281859:8281958:8288180:8288332,	8281860	8281958	8281937	8281937	Frame_Shift_Del	A	-	p.K94fs
LUAD	TCGA-55-8506-01	BCAT1	ENST00000261192.7,ENST00000544418.1,ENST00000538118.1,ENST00000546285.1,ENST00000539282.1	chr12	25031469:25031583:25034234:25034345:25047208:25047370,	25034235	25034345	25034329	25034329	Frame_Shift_Del	T	-	p.K99fs
LUAD	TCGA-55-8506-01	HDAC7	ENST00000463732.1,ENST00000470668.1,ENST00000380610.4,ENST00000485796.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48188651:48188716:48188966:48189163:48189369:48189393,	48188967	48189163	48189044	48189045	Frame_Shift_Ins	-	G	p.C403fs
LUAD	TCGA-55-8506-01	LIN7A	ENST00000549417.1,ENST00000261203.3	chr12	81242029:81242101:81283029:81283148:81331419:81331483,	81283030	81283148	81283065	81283066	Frame_Shift_Ins	-	T	p.NA55fs
LUAD	TCGA-55-8506-01	CRYL1	ENST00000382812.1,ENST00000298248.7	chr13	20987420:20987526:21006240:21006435:21013731:21013893,	21006241	21006435	21006393	21006393	Frame_Shift_Del	G	-	p.H139fs
LUAD	TCGA-55-8506-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021442	42021442	Frame_Shift_Del	A	-	p.R1246fs
LUAD	TCGA-55-8506-01	NMRAL1	ENST00000574425.1,ENST00000404295.3,ENST00000576176.1,ENST00000283429.6,ENST00000574733.1	chr16	4513803:4513851:4516153:4516403:4519227:4519366,	4516154	4516403	4516201	4516202	Frame_Shift_Del	GA	-	p.S161fs
LUAD	TCGA-55-8506-01	ERN2	ENST00000457008.2	chr16	23707214:23707299:23711859:23712025:23713472:23713594,	23711860	23712025	23711986	23711986	Frame_Shift_Del	G	-	p.L515fs
LUAD	TCGA-55-8506-01	ERN2	ENST00000562562.1	chr16	23707214:23707299:23711859:23712435:23713472:23713594,	23711860	23712435	23711986	23711986	Frame_Shift_Del	G	-	p.L515fs
LUAD	TCGA-55-8506-01	PRSS36	ENST00000571878.1	chr16	31150387:31150737:31151614:31151736:31151812:31152078,31150387:31150737:31151614:31151736:31151999:31152055,	31151615	31151736	31151663	31151664	Frame_Shift_Ins	-	G	p.R747fs
LUAD	TCGA-55-8506-01	ELP5	ENST00000396627.2,ENST00000354429.2,ENST00000396628.2	chr17	7161906:7162002:7162144:7162245:7162889:7163250,	7162145	7162245	7162192	7162195	Frame_Shift_Del	AGAG	-	p.KE261fs
LUAD	TCGA-55-8506-01	EIF5A	ENST00000336458.8,ENST00000336452.7,ENST00000416016.2,ENST00000571955.1,ENST00000573542.1,ENST00000576930.1,ENST00000419711.2	chr17	7214668:7214800:7214896:7214970:7215140:7215187,	7214897	7214970	7214920	7214921	Frame_Shift_Del	AG	-	p.TE142fs
LUAD	TCGA-55-8506-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.G607fs
LUAD	TCGA-55-8506-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000336057.5,ENST00000225983.6	chr17	42157474:42157593:42157768:42157866:42158130:42158250,	42157769	42157866	42157801	42157801	Frame_Shift_Del	G	-	p.P932fs
LUAD	TCGA-55-8506-01	NCLN	ENST00000590671.1,ENST00000588428.1,ENST00000246117.4	chr19	3196180:3196275:3198814:3198895:3201520:3201624,	3198815	3198895	3198891	3198891	Frame_Shift_Del	C	-	p.A231fs
LUAD	TCGA-55-8506-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838298	42838298	Frame_Shift_Del	G	-	p.W164fs
LUAD	TCGA-55-8506-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56204319:56204403:56206091:56206349:56206513:56206631,	56206092	56206349	56206189	56206189	Frame_Shift_Del	C	-	p.S540fs
LUAD	TCGA-55-8506-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17602334:17602418:17602499:17602592:17605220:17605313,	17602500	17602592	17602515	17602516	Frame_Shift_Del	AG	-	p.S1075fs
LUAD	TCGA-55-8506-01	SLC37A1	ENST00000352133.2,ENST00000398341.3	chr21	43945885:43945967:43954807:43954940:43955581:43955660,	43954808	43954940	43954890	43954890	Frame_Shift_Del	C	-	p.A74fs
LUAD	TCGA-55-8506-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.R23fs
LUAD	TCGA-55-8507-01	CLNK	ENST00000226951.6,ENST00000442825.2,ENST00000507719.1	chr4	10533879:10533907:10542117:10542228:10543645:10543665,	10542118	10542228	10542187	10542187	Frame_Shift_Del	G	-	p.P178fs
LUAD	TCGA-55-8507-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121663604:121663789:121668552:121668642:121671555:121671676,	121668553	121668642	121668587	121668587	Frame_Shift_Del	G	-	p.W379fs
LUAD	TCGA-55-8507-01	PLEKHH1	ENST00000329153.5	chr14	68028670:68028752:68028853:68029611:68035854:68035933,	68028854	68029611	68029533	68029533	Frame_Shift_Del	G	-	p.K395fs
LUAD	TCGA-55-8507-01	SRCAP	ENST00000483083.1,ENST00000395059.2,ENST00000262518.4	chr16	30731482:30731652:30732033:30732299:30732509:30732797,	30732034	30732299	30732218	30732218	Frame_Shift_Del	C	-	p.P1059fs
LUAD	TCGA-55-8507-01	APP	ENST00000354192.3,ENST00000348990.5,ENST00000448388.2,ENST00000359726.3,ENST00000439274.2,ENST00000448850.1,ENST00000440126.3,ENST00000415997.1,ENST00000357903.3,ENST00000358918.3,ENST00000346798.3	chr21	27347502:27347541:27348266:27348341:27354656:27354790,	27348267	27348341	27348320	27348320	Frame_Shift_Del	C	-	p.A416fs
LUAD	TCGA-55-8508-01	KIAA0319L	ENST00000426982.2	chr1	35972339:35972736:36019950:36020120:36022962:36023004,35972212:35972736:36019950:36020120:36023150:36023213,	36019951	36020120	36019983	36019984	Frame_Shift_Ins	-	A	p.L37fs
LUAD	TCGA-55-8508-01	SGIP1	ENST00000371036.3,ENST00000371039.1	chr1	67154830:67154958:67155872:67155999:67160121:67160187,	67155873	67155999	67155887	67155887	Frame_Shift_Del	C	-	p.S486fs
LUAD	TCGA-55-8508-01	DBNL	ENST00000411855.1,ENST00000490734.2,ENST00000485932.1	chr7	44092469:44092540:44096355:44096502:44097380:44097458,44089842:44089879:44096355:44096502:44097380:44097458,	44096356	44096502	44096475	44096475	Frame_Shift_Del	C	-	p.F149fs
LUAD	TCGA-55-8510-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1263910	1263910	Frame_Shift_Del	C	-	p.P1939fs
LUAD	TCGA-55-8511-01	DALRD3	ENST00000440857.1	chr3	49053009:49053140:49053251:49053519:49053590:49053773,	49053252	49053519	49053379	49053380	Frame_Shift_Del	AG	-	p.S323fs
LUAD	TCGA-55-8511-01	RASA2	ENST00000286364.3,ENST00000452898.1	chr3	141291988:141292063:141292785:141292909:141295841:141295948,	141292786	141292909	141292848	141292848	Frame_Shift_Del	C	-	p.C474fs
LUAD	TCGA-55-8511-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000569882.1,ENST00000317147.5,ENST00000569240.1	chr16	58592376:58592578:58594115:58594266:58608512:58608664,	58594116	58594266	58594169	58594170	Frame_Shift_Ins	-	C	p.IK692fs
LUAD	TCGA-55-8511-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577052	7577052	Frame_Shift_Del	G	-	p.H297fs
LUAD	TCGA-55-8511-01	RASIP1	ENST00000222145.4	chr19	49230649:49230687:49232193:49232847:49238452:49238808,	49232194	49232847	49232628	49232628	Frame_Shift_Del	G	-	p.R467fs
LUAD	TCGA-55-8514-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76371843	76371843	Frame_Shift_Del	G	-	p.P265fs
LUAD	TCGA-55-8514-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562696	32562696	Frame_Shift_Del	A	-	p.K942fs
LUAD	TCGA-55-8514-01	MLKL	ENST00000308807.7	chr16	74709252:74709302:74709510:74709662:74712796:74712846,	74709511	74709662	74709616	74709616	Frame_Shift_Del	C	-	p.G362fs
LUAD	TCGA-55-8514-01	TRIM47	ENST00000254816.2,ENST00000587339.1	chr17	73871480:73871555:73871981:73872180:73872342:73872475,	73871982	73872180	73872068	73872069	Frame_Shift_Ins	-	T	p.A372fs
LUAD	TCGA-55-8614-01	UTY	ENST00000331397.4,ENST00000382896.4	chrY	15361735:15361762:15362896:15363067:15372157:15372284,	15362897	15363067	15363031	15363031	Frame_Shift_Del	T	-	p.S1295fs
LUAD	TCGA-55-8615-01	RNF165	ENST00000543885.1,ENST00000269439.7,ENST00000586604.1,ENST00000592777.1	chr18	44030258:44030363:44030666:44030762:44035936:44036030,	44030667	44030762	44030744	44030744	Frame_Shift_Del	C	-	p.F266fs
LUAD	TCGA-55-8616-01	LRRCC1	ENST00000360375.3,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86027334:86027510:86027609:86027819:86035647:86035836,	86027610	86027819	86027714	86027715	Frame_Shift_Del	TG	-	p.SV255fs
LUAD	TCGA-55-8616-01	ACACB	ENST00000377854.5,ENST00000377848.3,ENST00000338432.7	chr12	109634812:109634958:109637206:109637357:109639371:109639506,	109637207	109637357	109637279	109637280	Frame_Shift_Ins	-	T	p.G901fs
LUAD	TCGA-55-8620-01	AJAP1	ENST00000378191.4	chr1	4715104:4715514:4771959:4772759:4829912:4830000,	4771960	4772759	4772157	4772157	Frame_Shift_Del	C	-	p.A76fs
LUAD	TCGA-55-8620-01	CSMD2	ENST00000373381.4,ENST00000241312.4	chr1	34383694:34383902:34401360:34401555:34498194:34498307,	34401361	34401555	34401376	34401376	Frame_Shift_Del	G	-	p.L233fs
LUAD	TCGA-55-8620-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156076	145156076	Frame_Shift_Del	G	-	p.P893fs
LUAD	TCGA-55-8620-01	TTLL4	ENST00000442769.1,ENST00000258398.4,ENST00000457313.1,ENST00000392102.1	chr2	219605243:219605307:219609831:219609956:219610413:219610524,	219609832	219609956	219609919	219609920	Frame_Shift_Ins	-	C	p.VP583fs
LUAD	TCGA-55-A48X-01	C6orf118	ENST00000230301.8	chr6	165713852:165713975:165715057:165715785:165723050:165723096,	165715058	165715785	165715130	165715130	Frame_Shift_Del	G	-	p.A123fs
LUAD	TCGA-55-A48Y-01	TBCD	ENST00000571712.1,ENST00000576160.2	chr17	80818269:80818325:80828099:80828256:80842020:80842078,80772722:80772810:80828099:80828256:80842020:80842078,80816471:80816543:80828099:80828256:80842020:80842078,	80828100	80828256	80828158	80828158	Frame_Shift_Del	G	-	p.V459fs
LUAD	TCGA-55-A48Z-01	TMEM63B	ENST00000371893.2,ENST00000323267.6,ENST00000533121.1,ENST00000259746.9	chr6	44117595:44117702:44117960:44118047:44118300:44118366,	44117961	44118047	44117984	44117991	Frame_Shift_Del	TGCACAAG	-	p.MHK515fs
LUAD	TCGA-55-A490-01	ADIPOR1	ENST00000367254.3,ENST00000436244.1,ENST00000426229.1,ENST00000340990.5,ENST00000417068.1	chr1	202915566:202915738:202917431:202917548:202920057:202920292,	202917432	202917548	202917477	202917478	Frame_Shift_Ins	-	A	p.P71fs
LUAD	TCGA-55-A490-01	MAD2L1	ENST00000333047.5	chr4	120982028:120982132:120986826:120986973:120987816:120987976,	120986827	120986973	120986894	120986900	Frame_Shift_Del	GAGTCCG	-	p.YGL49fs
LUAD	TCGA-55-A490-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13356906	13356906	Frame_Shift_Del	C	-	p.L226fs
LUAD	TCGA-55-A490-01	DOK2	ENST00000276420.4	chr8	21767344:21767442:21768183:21768368:21769411:21769493,	21768184	21768368	21768189	21768189	Frame_Shift_Del	C	-	p.D205fs
LUAD	TCGA-55-A490-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1	chr11	57464232:57464345:57466030:57466890:57467337:57467835,	57466031	57466890	57466733	57466733	Frame_Shift_Del	G	-	p.G609fs
LUAD	TCGA-55-A490-01	DLST	ENST00000334212.6,ENST00000238671.7,ENST00000334220.4,ENST00000554612.1	chr14	75366991:75367075:75367768:75367936:75368898:75369155,	75367769	75367936	75367870	75367870	Frame_Shift_Del	C	-	p.N387fs
LUAD	TCGA-55-A491-01	ZC3H6	ENST00000343936.4,ENST00000409871.1	chr2	113081728:113082240:113082540:113082774:113088581:113089859,	113082541	113082774	113082754	113082754	Frame_Shift_Del	G	-	p.R689fs
LUAD	TCGA-55-A491-01	TTC33	ENST00000511730.2	chr5	40730363:40730445:40746899:40747121:40755925:40756047,	40746900	40747121	40746906	40746906	Frame_Shift_Del	T	-	p.N72fs
LUAD	TCGA-55-A494-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
LUAD	TCGA-55-A494-01	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110200	120110201	Frame_Shift_Ins	-	G	p.R85fs
LUAD	TCGA-55-A494-01	AKAP17A	ENST00000313871.3	chrX	1714276:1714425:1718084:1718325:1719551:1721395,	1718085	1718325	1718125	1718126	Frame_Shift_Del	AG	-	p.R318fs
LUAD	TCGA-55-A4DF-01	CHD1L	ENST00000361293.5,ENST00000369258.4,ENST00000369259.3,ENST00000431239.1,ENST00000467213.1	chr1	146751698:146751864:146756023:146756172:146757000:146757164,	146756024	146756172	146756081	146756099	Frame_Shift_Del	ACAGAAAATCATTTGAACA	-	p.DRKSFEQ588fs
LUAD	TCGA-55-A4DG-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105187	168105187	Frame_Shift_Del	C	-	p.L2429fs
LUAD	TCGA-55-A4DG-01	DOCK9	ENST00000442173.1,ENST00000448493.2,ENST00000339416.2,ENST00000376460.1	chr13	99540885:99540965:99549741:99549864:99550432:99550515,	99549742	99549864	99549853	99549853	Frame_Shift_Del	T	-	p.K533fs
LUAD	TCGA-55-A4DG-01	LONP2	ENST00000285737.4,ENST00000566755.1,ENST00000535754.1,ENST00000416006.3	chr16	48311248:48311390:48329925:48330076:48333572:48333699,	48329926	48330076	48329978	48329984	Frame_Shift_Del	CCTTTGA	-	p.AFD479fs
LUAD	TCGA-55-A4DG-01	ARHGEF15	ENST00000361926.3,ENST00000421050.1	chr17	8222083:8222228:8222324:8222477:8222629:8222712,	8222325	8222477	8222445	8222445	Frame_Shift_Del	C	-	p.R718fs
LUAD	TCGA-62-8394-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68197045:68197168:68201069:68201306:68204356:68204462,	68201070	68201306	68201243	68201250	Frame_Shift_Del	CTGCGCCT	-	p.LRL1313fs
LUAD	TCGA-62-8394-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148332	44148335	Frame_Shift_Del	TTTG	-	p.NK238fs
LUAD	TCGA-62-8395-01	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146823705	146823708	Frame_Shift_Del	GCAT	-	p.MR235fs
LUAD	TCGA-62-8397-01	PAFAH1B1	ENST00000570400.1	chr17	2541591:2541614:2569309:2569384:2570285:2570492,	2569310	2569384	2569368	2569368	Frame_Shift_Del	T	-	p.I59fs
LUAD	TCGA-62-8399-01	PRRT1	ENST00000211413.5	chr6	32117313:32117499:32118144:32118683:32119585:32119676,	32118145	32118683	32118410	32118410	Frame_Shift_Del	G	-	p.P99fs
LUAD	TCGA-62-8399-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577503	14577504	Frame_Shift_Ins	-	C	p.H227fs
LUAD	TCGA-62-8399-01	BCAP31	ENST00000441714.1,ENST00000458587.2,ENST00000345046.6	chrX	152967461:152967562:152968389:152968513:152969413:152969549,	152968390	152968513	152968459	152968459	Frame_Shift_Del	C	-	p.E247fs
LUAD	TCGA-62-A46O-01	ADAMTS12	ENST00000515401.1,ENST00000352040.3	chr5	33751508:33751653:33881223:33881585:33891834:33892046,	33881224	33881585	33881301	33881301	Frame_Shift_Del	G	-	p.L138fs
LUAD	TCGA-62-A46O-01	TINAG	ENST00000259782.4	chr6	54208023:54208147:54212164:54212315:54214513:54214694,	54212165	54212315	54212178	54212178	Frame_Shift_Del	C	-	p.D254fs
LUAD	TCGA-62-A46O-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028562	100028562	Frame_Shift_Del	C	-	p.G307fs
LUAD	TCGA-62-A46O-01	CLASRP	ENST00000585615.1,ENST00000391953.4,ENST00000544944.2,ENST00000221455.3,ENST00000391952.3	chr19	45572323:45572382:45572459:45572506:45573279:45573362,	45572460	45572506	45572472	45572472	Frame_Shift_Del	G	-	p.E595fs
LUAD	TCGA-62-A46O-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158042	Frame_Shift_Del	C	-	p.T1178fs
LUAD	TCGA-62-A46O-01	PIM2	ENST00000376509.4	chrX	48771380:48771571:48771671:48771848:48772296:48772665,	48771672	48771848	48771840	48771840	Frame_Shift_Del	C	-	p.V202fs
LUAD	TCGA-62-A46O-01	MAGED2	ENST00000375060.1,ENST00000375058.1,ENST00000375068.1	chrX	54841093:54841208:54841680:54842123:54842313:54842440,	54841681	54842123	54841706	54841706	Frame_Shift_Del	G	-	p.W471fs
LUAD	TCGA-62-A46P-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155116142:155116273:155123104:155123281:155124677:155124757,	155123105	155123281	155123132	155123144	Frame_Shift_Del	ATACAACAACAGA	-	p.IQQQK212fs
LUAD	TCGA-62-A46P-01	HNF4A	ENST00000316673.4,ENST00000443598.2,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000609795.1,ENST00000316099.4	chr20	43034697:43034872:43036020:43036115:43042333:43042440,	43036021	43036115	43036056	43036056	Frame_Shift_Del	G	-	p.R109fs
LUAD	TCGA-62-A46R-01	EXOC6B	ENST00000410104.1,ENST00000272427.6	chr2	72958283:72958374:72960199:72960247:72968432:72968598,	72960200	72960247	72960228	72960228	Frame_Shift_Del	T	-	p.N100fs
LUAD	TCGA-62-A46R-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547504	165547505	Frame_Shift_Ins	-	T	p.EG439fs
LUAD	TCGA-62-A46R-01	DCAF7	ENST00000577702.1,ENST00000585252.2,ENST00000582103.1	chr17	61657185:61657304:61660862:61661073:61662572:61662613,	61660863	61661073	61660979	61660980	Frame_Shift_Del	TT	-	p.I215fs
LUAD	TCGA-62-A46V-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
LUAD	TCGA-62-A470-01	MTDH	ENST00000522313.1,ENST00000519934.1	chr8	98657020:98657115:98673299:98673401:98698895:98698980,	98673300	98673401	98673319	98673325	Frame_Shift_Del	AAGTGGC	-	p.EVA134fs
LUAD	TCGA-62-A470-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600473	10600479	Frame_Shift_Del	ATCCTTC	-	p.RRI459fs
LUAD	TCGA-62-A470-01	SH3KBP1	ENST00000379726.3,ENST00000494961.1,ENST00000397821.3,ENST00000379697.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19613066:19613118:19626055:19626163:19649981:19650076,	19626056	19626163	19626146	19626153	Frame_Shift_Del	GCCTACGT	-	p.DVG303fs
LUAD	TCGA-62-A472-01	CRISPLD1	ENST00000520277.1	chr8	75897104:75897155:75898160:75898480:75924667:75924724,	75898161	75898480	75898348	75898348	Frame_Shift_Del	G	-	p.E42fs
LUAD	TCGA-62-A472-01	CRISPLD1	ENST00000519798.1	chr8	75897104:75897155:75898160:75898352:75924667:75924724,	75898161	75898352	75898348	75898348	Frame_Shift_Del	G	-	p.E42fs
LUAD	TCGA-62-A472-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578192	7578192	Frame_Shift_Del	G	-	p.P219fs
LUAD	TCGA-64-1676-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
LUAD	TCGA-64-1676-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-64-1676-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934780	153934781	Frame_Shift_Ins	-	C	p.G78fs
LUAD	TCGA-64-1676-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.Q289fs
LUAD	TCGA-64-1676-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877785	150877786	Frame_Shift_Ins	-	C	p.A335fs
LUAD	TCGA-64-1676-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-64-1676-01	PTPRA	ENST00000358719.4,ENST00000356147.3,ENST00000318266.5,ENST00000455631.1,ENST00000216877.6	chr20	2944917:2944996:2945506:2945848:2955860:2955887,2944917:2944996:2945506:2945848:2967410:2967495,	2945507	2945848	2945550	2945550	Frame_Shift_Del	G	-	p.T39fs
LUAD	TCGA-64-1676-01	SND1	ENST00000354725.3	chr7	127630999:127631109:127714553:127714742:127721411:127721447,	127714554	127714742	127714606	127714606	Frame_Shift_Del	T	-	p.L611fs
LUAD	TCGA-64-1676-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.T1044fs
LUAD	TCGA-64-1676-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LUAD	TCGA-64-1677-01	KCNQ4	ENST00000347132.5,ENST00000506017.1	chr1	41287985:41288074:41289768:41289930:41296755:41296976,	41289769	41289930	41289922	41289923	Frame_Shift_Ins	-	G	p.PG428fs
LUAD	TCGA-64-1677-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579536	7579545	Frame_Shift_Del	CAATATCGTC	-	p.DDIE48fs
LUAD	TCGA-64-1677-01	SPRED3	ENST00000586301.1,ENST00000587013.1,ENST00000338502.4	chr19	38882851:38882928:38885282:38885426:38886119:38886788,	38885283	38885426	38885396	38885397	Frame_Shift_Ins	-	C	p.TP223fs
LUAD	TCGA-64-1678-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.Y118fs
LUAD	TCGA-64-1678-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-64-1678-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.T85fs
LUAD	TCGA-64-1678-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678333	73678333	Frame_Shift_Del	C	-	p.T1560fs
LUAD	TCGA-64-1678-01	VNN3	ENST00000414302.2	chr6	133046059:133046118:133047860:133048151:133049879:133050072,133046059:133046118:133047860:133048151:133055391:133055472,	133047861	133048151	133048074	133048074	Frame_Shift_Del	C	-	p.G205fs
LUAD	TCGA-64-1678-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
LUAD	TCGA-64-1678-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
LUAD	TCGA-64-1678-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-64-1678-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134349850	134349851	Frame_Shift_Del	CT	-	p.SS778fs
LUAD	TCGA-64-1678-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.H229fs
LUAD	TCGA-64-1678-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
LUAD	TCGA-64-1678-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.R200fs
LUAD	TCGA-64-1678-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546603	21546604	Frame_Shift_Ins	-	G	p.EG734fs
LUAD	TCGA-64-1678-01	MAPKBP1	ENST00000456763.2,ENST00000512970.1,ENST00000502292.1,ENST00000505061.1,ENST00000457542.2,ENST00000510535.1,ENST00000507762.1,ENST00000514566.1,ENST00000221214.6	chr15	42067532:42067587:42092020:42092112:42103080:42103143,	42092021	42092112	42092080	42092080	Frame_Shift_Del	C	-	p.D58fs
LUAD	TCGA-64-1678-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.FP623fs
LUAD	TCGA-64-1678-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
LUAD	TCGA-64-1678-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.HP25fs
LUAD	TCGA-64-1678-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.VG137fs
LUAD	TCGA-64-1678-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
LUAD	TCGA-64-1678-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.A88fs
LUAD	TCGA-64-1678-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
LUAD	TCGA-64-1678-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
LUAD	TCGA-64-1679-01	RYR2	ENST00000360064.6,ENST00000366574.2,ENST00000542537.1	chr1	237991680:237991745:237993829:237993930:237994813:237994865,	237993830	237993930	237993848	237993848	Frame_Shift_Del	G	-	p.G4892fs
LUAD	TCGA-64-1679-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103030	168103030	Frame_Shift_Del	G	-	p.G1711fs
LUAD	TCGA-64-1679-01	SNTG1	ENST00000520825.1,ENST00000522124.1,ENST00000518864.1	chr8	51621445:51621538:51664560:51664671:51705230:51705389,	51664561	51664671	51664620	51664620	Frame_Shift_Del	C	-	p.S448fs
LUAD	TCGA-64-1679-01	ADAL	ENST00000428046.3	chr15	43635191:43635273:43638051:43638178:43641104:43641243,	43638052	43638178	43638085	43638086	Frame_Shift_Del	TT	-	p.PL153fs
LUAD	TCGA-64-1679-01	BMP7	ENST00000395863.3,ENST00000450594.2	chr20	55758777:55758975:55777530:55777679:55803284:55803477,	55777531	55777679	55777651	55777651	Frame_Shift_Del	G	-	p.R214fs
LUAD	TCGA-64-1680-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-64-1680-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496635	15496636	Frame_Shift_Ins	-	G	p.LG393fs
LUAD	TCGA-64-1680-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
LUAD	TCGA-64-1680-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
LUAD	TCGA-64-1680-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.R164fs
LUAD	TCGA-64-1680-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218713071	218713072	Frame_Shift_Ins	-	G	p.R598fs
LUAD	TCGA-64-1680-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LUAD	TCGA-64-1680-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795823	42795824	Frame_Shift_Ins	-	CC	p.R1847fs
LUAD	TCGA-64-1681-01	CD9	ENST00000540891.1,ENST00000382515.2,ENST00000481267.1,ENST00000382519.4,ENST00000009180.4,ENST00000382518.1	chr12	6342577:6342652:6344394:6344493:6344641:6344731,	6344395	6344493	6344416	6344416	Frame_Shift_Del	T	-	p.F124fs
LUAD	TCGA-64-5774-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000520467.1	chr11	9090916:9091042:9096027:9096162:9100930:9101056,	9096028	9096162	9096031	9096031	Frame_Shift_Del	C	-	p.E173fs
LUAD	TCGA-64-5775-01	DGUOK	ENST00000348222.1,ENST00000493055.1,ENST00000489796.1	chr2	74154034:74154179:74166036:74166149:74173845:74174015,	74166037	74166149	74166144	74166145	Frame_Shift_Ins	-	A	p.K84fs
LUAD	TCGA-64-5775-01	IGF2BP2	ENST00000382199.2,ENST00000457616.2,ENST00000421047.2	chr3	185376128:185376197:185390328:185390457:185393083:185393219,	185390329	185390457	185390353	185390353	Frame_Shift_Del	G	-	p.P392fs
LUAD	TCGA-64-5775-01	ZC3HAV1	ENST00000471652.1,ENST00000242351.5	chr7	138763297:138763399:138764215:138764989:138768525:138768778,	138764216	138764989	138764850	138764850	Frame_Shift_Del	G	-	p.I279fs
LUAD	TCGA-64-5775-01	ZC3HAV1	ENST00000464606.1	chr7	138763297:138763399:138763849:138764989:138768525:138768778,	138763850	138764989	138764850	138764850	Frame_Shift_Del	G	-	p.I279fs
LUAD	TCGA-64-5775-01	SFTPA2	ENST00000372327.5	chr10	81318641:81318761:81319067:81319262:81319724:81319754,81318641:81318761:81319067:81319262:81320119:81320151,	81319068	81319262	81319205	81319205	Frame_Shift_Del	A	-	p.L12fs
LUAD	TCGA-64-5775-01	SFTPA1	ENST00000429958.1,ENST00000428376.2	chr10	81371092:81371145:81371558:81371753:81372067:81372187,81370716:81370738:81371558:81371753:81372067:81372187,	81371559	81371753	81371615	81371615	Frame_Shift_Del	T	-	p.L12fs
LUAD	TCGA-64-5775-01	RBM10	ENST00000345781.6,ENST00000377604.3,ENST00000329236.7	chrX	47038501:47038562:47038717:47038894:47039278:47039436,	47038718	47038894	47038768	47038768	Frame_Shift_Del	C	-	p.P259fs
LUAD	TCGA-64-5778-01	SLIT2	ENST00000511508.1,ENST00000273739.5,ENST00000509394.2,ENST00000503837.1,ENST00000504154.1,ENST00000503823.1	chr4	20547653:20547722:20550110:20550182:20550679:20550751,	20550111	20550182	20550132	20550132	Frame_Shift_Del	A	-	p.I789fs
LUAD	TCGA-64-5778-01	RFESD	ENST00000311364.4,ENST00000458310.1,ENST00000511684.1,ENST00000380005.4	chr5	94989764:94989940:94990036:94990071:94991749:94991894,	94990037	94990071	94990059	94990059	Frame_Shift_Del	G	-	p.L119fs
LUAD	TCGA-64-5778-01	HOXA3	ENST00000317201.2	chr7	27146630:27148339:27149733:27150379:27162177:27162261,	27149734	27150379	27149826	27149827	Frame_Shift_Ins	-	G	p.A145fs
LUAD	TCGA-64-5778-01	CTTNBP2	ENST00000446636.1,ENST00000160373.3,ENST00000441556.1	chr7	117400488:117400764:117407112:117407230:117417564:117417819,	117407113	117407230	117407198	117407198	Frame_Shift_Del	C	-	p.G937fs
LUAD	TCGA-64-5778-01	SPAG7	ENST00000575784.1,ENST00000573805.1,ENST00000206020.3	chr17	4863753:4863842:4864080:4864148:4871014:4871080,	4864081	4864148	4864095	4864095	Frame_Shift_Del	C	-	p.E36fs
LUAD	TCGA-64-5779-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093111	160093111	Frame_Shift_Del	G	-	p.G97fs
LUAD	TCGA-64-5781-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605401	179605401	Frame_Shift_Del	T	-	p.S4187fs
LUAD	TCGA-64-5781-01	EPHA5	ENST00000511294.1,ENST00000273854.3,ENST00000354839.4	chr4	66286158:66286283:66356094:66356430:66361105:66361261,	66356095	66356430	66356246	66356246	Frame_Shift_Del	C	-	p.R417fs
LUAD	TCGA-64-5781-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047670	125047670	Frame_Shift_Del	C	-	p.H813fs
LUAD	TCGA-64-5781-01	MED1	ENST00000394287.3,ENST00000300651.6,ENST00000577831.1	chr17	37571503:37571592:37575969:37576171:37579579:37579698,	37575970	37576171	37575999	37575999	Frame_Shift_Del	C	-	p.S423fs
LUAD	TCGA-64-5781-01	TTYH2	ENST00000526858.1,ENST00000529107.1,ENST00000269346.4,ENST00000441391.2	chr17	72248372:72248515:72249219:72249405:72249893:72249972,	72249220	72249405	72249262	72249263	Frame_Shift_Ins	-	AA	p.NP113fs
LUAD	TCGA-64-5815-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157069	145157069	Frame_Shift_Del	A	-	p.L562fs
LUAD	TCGA-67-3770-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-67-3770-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.S54fs
LUAD	TCGA-67-3770-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.G604fs
LUAD	TCGA-67-3770-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
LUAD	TCGA-67-3770-01	AGPAT4	ENST00000457520.2,ENST00000366911.5,ENST00000320285.4	chr6	161557286:161557666:161560453:161560652:161567555:161567631,	161560454	161560652	161560588	161560589	Frame_Shift_Ins	-	G	p.A303fs
LUAD	TCGA-67-3770-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
LUAD	TCGA-67-3770-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.R3747fs
LUAD	TCGA-67-3770-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
LUAD	TCGA-67-3770-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.F788fs
LUAD	TCGA-67-3770-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906659	103906660	Frame_Shift_Ins	-	C	p.P1304fs
LUAD	TCGA-67-3770-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018467	134018468	Frame_Shift_Ins	-	G	p.MG246fs
LUAD	TCGA-67-3770-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559112	56559113	Frame_Shift_Ins	-	G	p.R1074fs
LUAD	TCGA-67-3770-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
LUAD	TCGA-67-3770-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57114417	57114418	Frame_Shift_Ins	-	G	p.R299fs
LUAD	TCGA-67-3770-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546603	21546604	Frame_Shift_Ins	-	G	p.EG734fs
LUAD	TCGA-67-3770-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.R529fs
LUAD	TCGA-67-3770-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276860	15276861	Frame_Shift_Ins	-	C	p.S1802fs
LUAD	TCGA-67-3770-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.F103fs
LUAD	TCGA-67-3770-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-67-3770-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-67-3770-01	PARVG	ENST00000356909.3,ENST00000468564.2,ENST00000444313.3,ENST00000415224.1,ENST00000422871.1,ENST00000475485.2	chr22	44584993:44585134:44586430:44586546:44587928:44587984,	44586431	44586546	44586474	44586474	Frame_Shift_Del	G	-	p.V144fs
LUAD	TCGA-67-3770-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.P30fs
LUAD	TCGA-67-3770-01	MAGED2	ENST00000375060.1,ENST00000375058.1,ENST00000375068.1	chrX	54841093:54841208:54841680:54842123:54842313:54842440,	54841681	54842123	54841728	54841728	Frame_Shift_Del	G	-	p.A478fs
LUAD	TCGA-67-3771-01	DHDDS	ENST00000360009.2,ENST00000434391.2,ENST00000236342.7,ENST00000416052.1	chr1	26772854:26772923:26774049:26774151:26784281:26784396,	26774050	26774151	26774120	26774121	Frame_Shift_Ins	-	G	p.G171fs
LUAD	TCGA-67-3771-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097629	27097629	Frame_Shift_Del	G	-	p.W1073fs
LUAD	TCGA-67-3771-01	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964709	100964710	Frame_Shift_Ins	-	C	p.T549fs
LUAD	TCGA-67-3771-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
LUAD	TCGA-67-3771-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
LUAD	TCGA-67-3771-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
LUAD	TCGA-67-3771-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.S54fs
LUAD	TCGA-67-3771-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658017	27658018	Frame_Shift_Ins	-	C	p.A195fs
LUAD	TCGA-67-3771-01	SNRK	ENST00000429705.2	chr3	43328077:43328167:43344589:43345284:43373660:43373802,	43344590	43345284	43345163	43345166	Frame_Shift_Del	GACA	-	p.LT156fs
LUAD	TCGA-67-3771-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
LUAD	TCGA-67-3771-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.G96fs
LUAD	TCGA-67-3771-01	ROBO1	ENST00000467549.1,ENST00000495273.1	chr3	78795892:78796050:78987750:78988077:79067556:79067694,	78987751	78988077	78988050	78988050	Frame_Shift_Del	G	-	p.P29fs
LUAD	TCGA-67-3771-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LUAD	TCGA-67-3771-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
LUAD	TCGA-67-3771-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
LUAD	TCGA-67-3771-01	HSPA4	ENST00000304858.2	chr5	132435236:132435344:132437450:132437570:132439556:132439718,	132437451	132437570	132437501	132437501	Frame_Shift_Del	A	-	p.P696fs
LUAD	TCGA-67-3771-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700166	149700167	Frame_Shift_Ins	-	C	p.T372fs
LUAD	TCGA-67-3771-01	GUSB	ENST00000345660.6,ENST00000465785.1	chr7	65439390:65439428:65439512:65439691:65441001:65441189,	65439513	65439691	65439604	65439604	Frame_Shift_Del	G	-	p.H385fs
LUAD	TCGA-67-3771-01	TESK1	ENST00000336395.5	chr9	35606233:35606282:35606833:35606980:35607578:35607669,35606233:35606282:35606833:35606980:35607323:35607406,	35606834	35606980	35606843	35606843	Frame_Shift_Del	G	-	p.G135fs
LUAD	TCGA-67-3771-01	ZDHHC16	ENST00000370854.3,ENST00000462924.1,ENST00000353979.3,ENST00000370842.2,ENST00000414567.1,ENST00000420089.1,ENST00000417044.1,ENST00000370846.4,ENST00000492610.1,ENST00000393760.1,ENST00000352634.4,ENST00000495735.1	chr10	99211607:99211675:99211846:99212041:99212171:99212222,	99211847	99212041	99212032	99212036	Frame_Shift_Del	CCCAC	-	p.YPP143fs
LUAD	TCGA-67-3771-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
LUAD	TCGA-67-3771-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
LUAD	TCGA-67-3771-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
LUAD	TCGA-67-3771-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64604504:64604701:64606658:64606791:64608058:64608241,	64606659	64606791	64606758	64606758	Frame_Shift_Del	G	-	p.L1366fs
LUAD	TCGA-67-3771-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000336057.5,ENST00000225983.6	chr17	42157474:42157593:42157768:42157866:42158130:42158250,	42157769	42157866	42157800	42157801	Frame_Shift_Ins	-	G	p.W933fs
LUAD	TCGA-67-3771-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
LUAD	TCGA-67-3771-01	MBD1	ENST00000591416.1,ENST00000339998.6,ENST00000424334.2,ENST00000398495.2,ENST00000269471.5,ENST00000349085.2,ENST00000457839.2,ENST00000590208.1,ENST00000398493.1,ENST00000585595.1,ENST00000347968.3,ENST00000398488.1,ENST00000269468.5,ENST00000436910.1,ENST00000588937.1,ENST00000587605.1,ENST00000586118.1,ENST00000589733.1,ENST00000382948.5,ENST00000591535.1	chr18	47802020:47802098:47802204:47802351:47802747:47802788,	47802205	47802351	47802344	47802344	Frame_Shift_Del	C	-	p.G175fs
LUAD	TCGA-67-3771-01	LDLR	ENST00000558013.1,ENST00000545707.1,ENST00000558518.1,ENST00000252444.5,ENST00000455727.2,ENST00000535915.1	chr19	11233851:11234020:11238683:11238761:11240188:11240346,	11238684	11238761	11238690	11238691	Frame_Shift_Del	GC	-	p.G773fs
LUAD	TCGA-67-3771-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.E81fs
LUAD	TCGA-67-3771-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-67-3771-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.VP155fs
LUAD	TCGA-67-3771-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509593	102509593	Frame_Shift_Del	C	-	p.A45fs
LUAD	TCGA-67-3771-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509593	102509593	Frame_Shift_Del	C	-	p.A45fs
LUAD	TCGA-67-3771-01	CPNE6	ENST00000397016.2,ENST00000537691.1,ENST00000216775.2,ENST00000558995.1,ENST00000460657.1	chr14	24546362:24546599:24546801:24546976:24547096:24547204,	24546802	24546976	24546933	24546933	Frame_Shift_Del	C	-	p.S556fs
LUAD	TCGA-67-3771-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.L18fs
LUAD	TCGA-67-3771-01	SEZ6L2	ENST00000537485.1,ENST00000350527.3,ENST00000568407.2,ENST00000308713.5,ENST00000346932.5	chr16	29889607:29889746:29891184:29891385:29896906:29897070,	29891185	29891385	29891248	29891249	Frame_Shift_Ins	-	G	p.C504fs
LUAD	TCGA-67-3772-01	UBA7	ENST00000333486.3	chr3	49846408:49846592:49846822:49846897:49846974:49847158,	49846823	49846897	49846857	49846860	Frame_Shift_Del	TGTT	-	p.KQ709fs
LUAD	TCGA-67-3772-01	NCR3	ENST00000376071.4	chr6	31557558:31557676:31557751:31557903:31560455:31560526,	31557752	31557903	31557857	31557858	Frame_Shift_Del	CA	-	p.L30fs
LUAD	TCGA-67-3772-01	FOXM1	ENST00000361953.3,ENST00000342628.2,ENST00000359843.3,ENST00000537018.1	chr12	2975558:2975687:2977728:2977920:2981261:2981410,	2977729	2977920	2977901	2977910	Frame_Shift_Del	GGTCTCGAAG	-	p.PSRP222fs
LUAD	TCGA-67-3773-01	PLSCR1	ENST00000462666.1,ENST00000487389.1,ENST00000472349.1,ENST00000342435.4,ENST00000494568.1	chr3	146243391:146243434:146246400:146246618:146251256:146251329,	146246401	146246618	146246596	146246597	Frame_Shift_Ins	-	T	p.S39fs
LUAD	TCGA-67-3774-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.H352fs
LUAD	TCGA-67-3774-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
LUAD	TCGA-67-3774-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
LUAD	TCGA-67-3774-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.LG141fs
LUAD	TCGA-67-3774-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026383	226026384	Frame_Shift_Ins	-	C	p.NP131fs
LUAD	TCGA-67-3774-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-67-3774-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.P202fs
LUAD	TCGA-67-3774-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877785	150877786	Frame_Shift_Ins	-	C	p.A335fs
LUAD	TCGA-67-3774-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.*85fs
LUAD	TCGA-67-3774-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.I1028fs
LUAD	TCGA-67-3774-01	SGCD	ENST00000435422.3,ENST00000337851.4,ENST00000517913.1,ENST00000447401.1	chr5	155771498:155771687:155935610:155935712:156016240:156016244,	155935611	155935712	155935709	155935710	Frame_Shift_Del	AC	-	p.RP96fs
LUAD	TCGA-67-3774-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
LUAD	TCGA-67-3774-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.P70fs
LUAD	TCGA-67-3774-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112460	36112461	Frame_Shift_Ins	-	A	p.K683fs
LUAD	TCGA-67-3774-01	CDK9	ENST00000373264.4,ENST00000373265.2	chr9	130550492:130550664:130550822:130550971:130551456:130551643,	130550823	130550971	130550969	130550969	Frame_Shift_Del	G	-	p.E368fs
LUAD	TCGA-67-3774-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852646	20852647	Frame_Shift_Ins	-	C	p.G1081fs
LUAD	TCGA-67-3774-01	MVP	ENST00000357402.5,ENST00000395353.1	chr16	29853235:29853433:29855813:29856200:29857183:29857300,	29855814	29856200	29855917	29855918	Frame_Shift_Ins	-	G	p.G580fs
LUAD	TCGA-67-3774-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
LUAD	TCGA-67-3774-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.R23fs
LUAD	TCGA-67-3774-01	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381017.2,ENST00000381022.2	chr9	13106941:13107110:13108934:13109058:13109950:13110063,	13108935	13109058	13108980	13108981	Frame_Shift_Ins	-	C	p.T2007fs
LUAD	TCGA-67-3774-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LUAD	TCGA-67-4679-01	LRRC2	ENST00000395905.3,ENST00000296144.3	chr3	46580534:46580691:46586535:46586743:46592956:46593100,	46586536	46586743	46586690	46586691	Frame_Shift_Ins	-	G	p.G60fs
LUAD	TCGA-67-4679-01	NFIB	ENST00000397581.2,ENST00000380934.4,ENST00000397579.2,ENST00000380959.3,ENST00000543693.1,ENST00000380924.1,ENST00000380953.1,ENST00000397575.3	chr9	14146687:14146806:14150143:14150264:14155823:14155892,	14150144	14150264	14150231	14150231	Frame_Shift_Del	G	-	p.P240fs
LUAD	TCGA-69-7760-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
LUAD	TCGA-69-7761-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449409	85449409	Frame_Shift_Del	T	-	p.L280fs
LUAD	TCGA-69-7763-01	CCDC13	ENST00000472921.1	chr3	42771958:42772081:42774378:42774462:42774961:42775036,42754653:42754808:42774378:42774462:42774961:42775036,	42774379	42774462	42774410	42774410	Frame_Shift_Del	A	-	p.S522fs
LUAD	TCGA-69-7763-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
LUAD	TCGA-69-7765-01	SHISA4	ENST00000464117.1,ENST00000362011.6	chr1	201858690:201858744:201859581:201859715:201860528:201860696,	201859582	201859715	201859666	201859667	Frame_Shift_Ins	-	T	p.L111fs
LUAD	TCGA-69-7765-01	ZNF536	ENST00000355537.3,ENST00000585628.1	chr19	30934467:30936639:31025753:31025906:31038849:31039375,	31025754	31025906	31025863	31025864	Frame_Shift_Del	CC	-	p.FR760fs
LUAD	TCGA-69-7765-01	PRODH2	ENST00000588266.2	chr19	36293092:36293178:36293869:36293980:36297331:36297348,36290891:36291124:36293869:36293980:36297331:36297348,	36293870	36293980	36293929	36293929	Frame_Shift_Del	G	-	p.P427fs
LUAD	TCGA-69-7765-01	NINL	ENST00000278886.6	chr20	25450626:25450731:25456678:25457725:25459558:25459663,	25456679	25457725	25456791	25456791	Frame_Shift_Del	C	-	p.E1046fs
LUAD	TCGA-69-7765-01	ADSL	ENST00000342312.6	chr22	40742535:40742715:40745835:40746039:40749076:40749121,	40745836	40746039	40745905	40745905	Frame_Shift_Del	A	-	p.K75fs
LUAD	TCGA-69-7973-01	SLC6A20	ENST00000456124.2,ENST00000358525.4	chr3	45821500:45821592:45823574:45823715:45837790:45837852,	45823575	45823715	45823661	45823661	Frame_Shift_Del	A	-	p.L59fs
LUAD	TCGA-69-7973-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108138066:108138069:108139136:108139336:108141790:108141873,	108139137	108139336	108139250	108139251	Frame_Shift_Ins	-	TTAGGGCAGCTGA	p.*918fs
LUAD	TCGA-69-7973-01	LAMA3	ENST00000399516.3,ENST00000585600.1	chr18	21269647:21269941:21293883:21294036:21327906:21328024,	21293884	21294036	21294017	21294017	Frame_Shift_Del	T	-	p.L143fs
LUAD	TCGA-69-7973-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16612157	16612157	Frame_Shift_Del	C	-	p.S185fs
LUAD	TCGA-69-7973-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000426907.1,ENST00000262854.6	chrX	53565297:53565415:53565795:53566041:53566617:53566773,	53565796	53566041	53565946	53565946	Frame_Shift_Del	G	-	p.H3910fs
LUAD	TCGA-69-7974-01	ST6GAL2	ENST00000361803.3	chr2	107418063:107418319:107423101:107423405:107446521:107446535,	107423102	107423405	107423204	107423204	Frame_Shift_Del	C	-	p.G507fs
LUAD	TCGA-69-7974-01	RFT1	ENST00000467048.1,ENST00000296292.3	chr3	53156389:53156579:53157739:53157856:53159924:53160010,	53157740	53157856	53157784	53157785	Frame_Shift_Ins	-	C	p.D74fs
LUAD	TCGA-69-7974-01	CCDC15	ENST00000344762.5,ENST00000529051.1	chr11	124857022:124858030:124861356:124861479:124862475:124862583,	124861357	124861479	124861402	124861402	Frame_Shift_Del	G	-	p.G652fs
LUAD	TCGA-69-7974-01	JPH4	ENST00000553505.1	chr14	24044893:24045665:24046283:24046833:24047388:24047779,	24046284	24046833	24046649	24046649	Frame_Shift_Del	C	-	p.G5fs
LUAD	TCGA-69-7974-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42046634:42046765:42049985:42050037:42052520:42052727,	42049986	42050037	42050012	42050012	Frame_Shift_Del	A	-	p.E2389fs
LUAD	TCGA-69-7974-01	NLGN4X	ENST00000275857.6,ENST00000381095.3,ENST00000538097.1,ENST00000381092.1,ENST00000381093.2	chrX	5821117:5821907:5827094:5827280:5947320:5947473,	5827095	5827280	5827137	5827137	Frame_Shift_Del	C	-	p.A257fs
LUAD	TCGA-69-7978-01	MCPH1	ENST00000344683.5,ENST00000519480.1	chr8	6289019:6289107:6293568:6293683:6296473:6296617,	6293569	6293683	6293637	6293638	Frame_Shift_Ins	-	T	p.*131fs
LUAD	TCGA-69-7978-01	NF1	ENST00000417592.2,ENST00000581790.1,ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29670026:29670153:29676137:29676269:29677200:29677336,	29676138	29676269	29676187	29676187	Frame_Shift_Del	A	-	p.L2413fs
LUAD	TCGA-69-7978-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640883	17640883	Frame_Shift_Del	G	-	p.P90fs
LUAD	TCGA-69-7979-01	ARIH2	ENST00000498314.1,ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000483333.1,ENST00000465217.1,ENST00000452385.1	chr3	49004638:49004708:49005966:49006088:49008027:49008077,	49005967	49006088	49006061	49006062	Frame_Shift_Del	GC	-	p.RR211fs
LUAD	TCGA-69-7979-01	MFSD1	ENST00000480292.1,ENST00000415822.2,ENST00000392813.4,ENST00000484166.1,ENST00000264266.8,ENST00000471500.1,ENST00000477743.1,ENST00000489639.1	chr3	158527025:158527076:158531753:158531856:158537437:158537495,	158531754	158531856	158531838	158531838	Frame_Shift_Del	G	-	p.G261fs
LUAD	TCGA-69-7979-01	POLH	ENST00000443535.1,ENST00000535400.1	chr6	43544110:43544177:43550743:43550878:43555008:43555137,	43550744	43550878	43550832	43550832	Frame_Shift_Del	C	-	p.L77fs
LUAD	TCGA-69-7979-01	SMAP1	ENST00000316999.5,ENST00000370455.3	chr6	71566561:71566733:71567624:71567932:71569902:71570869,	71567625	71567932	71567765	71567766	Frame_Shift_Ins	-	T	p.G368fs
LUAD	TCGA-69-7979-01	LANCL2	ENST00000452107.2,ENST00000254770.2	chr7	55459485:55459603:55466115:55466323:55467649:55467797,	55466116	55466323	55466256	55466257	Frame_Shift_Ins	-	T	p.G155fs
LUAD	TCGA-69-7979-01	CARS	ENST00000524825.1	chr11	3062125:3062214:3063394:3063560:3078572:3078610,	3063395	3063560	3063445	3063446	Frame_Shift_Ins	-	A	p.D106fs
LUAD	TCGA-69-7979-01	CARS	ENST00000439280.2,ENST00000526890.1	chr11	3062125:3062214:3063394:3063486:3078572:3078610,3062125:3062261:3063394:3063486:3078572:3078610,	3063395	3063486	3063445	3063446	Frame_Shift_Ins	-	A	p.D106fs
LUAD	TCGA-69-7979-01	SBF2	ENST00000420722.2,ENST00000533770.1,ENST00000256190.8	chr11	9985319:9985429:9989887:9990092:10011043:10011142,	9989888	9990092	9989990	9989990	Frame_Shift_Del	G	-	p.R500fs
LUAD	TCGA-69-7979-01	SLCO2B1	ENST00000454962.2,ENST00000428359.2,ENST00000525650.1,ENST00000341411.4,ENST00000532236.1,ENST00000289575.5	chr11	74913945:74914010:74914351:74914472:74915444:74915762,	74914352	74914472	74914385	74914385	Frame_Shift_Del	C	-	p.A621fs
LUAD	TCGA-69-7979-01	DRAM1	ENST00000258534.8	chr12	102295068:102295211:102301963:102302141:102307951:102308010,	102301964	102302141	102301996	102302002	Frame_Shift_Del	CGCTCTT	-	p.GAL125fs
LUAD	TCGA-69-7979-01	PRTG	ENST00000389286.4	chr15	55916539:55916705:55919205:55919326:55921019:55921202,	55919206	55919326	55919219	55919220	Frame_Shift_Ins	-	T	p.K972fs
LUAD	TCGA-69-7979-01	ITGAX	ENST00000268296.4,ENST00000562522.1	chr16	31383917:31383991:31384569:31384711:31388119:31388236,	31384570	31384711	31384650	31384651	Frame_Shift_Ins	-	A	p.D816fs
LUAD	TCGA-69-7979-01	CHRDL1	ENST00000444321.2,ENST00000482160.1,ENST00000372042.1	chrX	109924709:109924877:109931821:109932031:109937390:109937559,	109931822	109932031	109931877	109931877	Frame_Shift_Del	A	-	p.Y310fs
LUAD	TCGA-69-7980-01	C8B	ENST00000535057.1,ENST00000543257.1,ENST00000371237.4	chr1	57409368:57409497:57411493:57411734:57415227:57415425,	57411494	57411734	57411544	57411544	Frame_Shift_Del	C	-	p.G300fs
LUAD	TCGA-69-7980-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5617148:5617271:5620204:5620409:5624263:5624718,	5620205	5620409	5620294	5620294	Frame_Shift_Del	C	-	p.A793fs
LUAD	TCGA-69-7980-01	STX5	ENST00000491231.1,ENST00000294179.3,ENST00000541317.1,ENST00000394690.1,ENST00000492066.1	chr11	62574890:62575100:62591637:62591759:62591930:62592037,	62591638	62591759	62591720	62591724	Frame_Shift_Del	TGTTC	-	p.QNI274fs
LUAD	TCGA-69-7980-01	NFATC4	ENST00000554591.1,ENST00000554344.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000555802.1,ENST00000422617.3,ENST00000554966.1,ENST00000554050.1,ENST00000553879.1,ENST00000554473.1,ENST00000557451.1,ENST00000555453.1,ENST00000556279.1,ENST00000539237.2,ENST00000250373.4,ENST00000554655.1,ENST00000555393.1,ENST00000424781.2,ENST00000553469.1,ENST00000553708.1,ENST00000555167.1,ENST00000556759.1,ENST00000555590.1,ENST00000413692.2	chr14	24844865:24844921:24845180:24845307:24845499:24845751,	24845181	24845307	24845275	24845275	Frame_Shift_Del	G	-	p.R738fs
LUAD	TCGA-69-7980-01	SLFN5	ENST00000542451.1	chr17	33570107:33570162:33585669:33586721:33587989:33588115,	33585670	33586721	33586549	33586549	Frame_Shift_Del	C	-	p.F280fs
LUAD	TCGA-69-8253-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471306	93471306	Frame_Shift_Del	T	-	p.N143fs
LUAD	TCGA-69-8253-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471306	93471306	Frame_Shift_Del	T	-	p.N143fs
LUAD	TCGA-69-8254-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762337	36762338	Frame_Shift_Del	AC	-	p.T757fs
LUAD	TCGA-69-8255-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108128207:108128333:108129712:108129802:108137897:108138069,	108129713	108129802	108129792	108129792	Frame_Shift_Del	G	-	p.C819fs
LUAD	TCGA-69-A59K-01	GC	ENST00000504199.1,ENST00000509740.1,ENST00000273951.8,ENST00000503472.1	chr4	72611867:72611922:72618234:72618367:72620127:72620195,	72618235	72618367	72618268	72618268	Frame_Shift_Del	G	-	p.S454fs
LUAD	TCGA-69-A59K-01	KCNQ5	ENST00000414165.2,ENST00000403813.2,ENST00000370398.1,ENST00000355194.4,ENST00000355635.3,ENST00000342056.2,ENST00000370392.1,ENST00000402622.2	chr6	73787484:73787610:73814979:73815090:73821030:73821126,	73814980	73815090	73815020	73815020	Frame_Shift_Del	T	-	p.L320fs
LUAD	TCGA-69-A59K-01	CDH17	ENST00000027335.3,ENST00000450165.2,ENST00000441892.2	chr8	95143103:95143220:95158155:95158395:95160971:95161102,	95158156	95158395	95158285	95158285	Frame_Shift_Del	G	-	p.L680fs
LUAD	TCGA-69-A59K-01	PTPN6	ENST00000447931.2,ENST00000416215.2,ENST00000536013.1,ENST00000399448.1,ENST00000545153.1,ENST00000318974.9,ENST00000456013.1,ENST00000539365.1	chr12	7064116:7064157:7064313:7064430:7064534:7064557,	7064314	7064430	7064388	7064388	Frame_Shift_Del	G	-	p.T197fs
LUAD	TCGA-69-A59K-01	ZNF75D	ENST00000370766.3	chrX	134425397:134425489:134426206:134426399:134427655:134428184,	134426207	134426399	134426224	134426225	Frame_Shift_Ins	-	A	p.A196fs
LUAD	TCGA-69-A59K-01	GAB3	ENST00000496390.1,ENST00000424127.2,ENST00000475685.1,ENST00000369575.3	chrX	153906566:153906571:153908408:153908525:153924191:153924294,	153908409	153908525	153908478	153908490	Frame_Shift_Del	CCACGTAAGGGCA	-	p.GALTW521fs
LUAD	TCGA-73-4659-01	IQGAP2	ENST00000504477.1,ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3	chr5	75991278:75991491:75993811:75993972:75996900:75997038,	75993812	75993972	75993856	75993857	Frame_Shift_Ins	-	T	p.G1418fs
LUAD	TCGA-73-4666-01	SPOCK3	ENST00000535728.1,ENST00000507370.1,ENST00000541354.1,ENST00000421836.2,ENST00000511269.1,ENST00000504953.1,ENST00000511905.1,ENST00000534949.1,ENST00000505187.1,ENST00000502821.1,ENST00000511531.1,ENST00000512681.1,ENST00000510741.1,ENST00000357154.3,ENST00000502330.1,ENST00000357545.4,ENST00000506886.1,ENST00000507137.1,ENST00000541637.1	chr4	167658617:167658755:167663147:167663210:167675658:167675880,	167663148	167663210	167663162	167663163	Frame_Shift_Ins	-	C	p.K330fs
LUAD	TCGA-73-4666-01	GCLC	ENST00000229416.6,ENST00000509541.1	chr6	53371710:53371823:53372277:53372416:53373392:53373509,	53372278	53372416	53372308	53372311	Frame_Shift_Del	TATC	-	p.DK351fs
LUAD	TCGA-73-4666-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61428610:61428777:61432143:61432751:61457078:61457187,	61432144	61432751	61432309	61432309	Frame_Shift_Del	G	-	p.G640fs
LUAD	TCGA-73-4668-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39066558:39066601:39068557:39068688:39068783:39068844,	39068558	39068688	39068645	39068646	Frame_Shift_Ins	-	T	p.Q4749fs
LUAD	TCGA-73-4670-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074781	31074782	Frame_Shift_Ins	-	T	p.*361fs
LUAD	TCGA-73-4670-01	HYDIN	ENST00000393567.2,ENST00000378856.4	chr16	70869578:70869737:70871592:70871791:70873966:70874136,	70871593	70871791	70871619	70871619	Frame_Shift_Del	T	-	p.I4406fs
LUAD	TCGA-73-4675-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854284	40854284	Frame_Shift_Del	C	-	p.C38fs
LUAD	TCGA-73-4676-01	NF1	ENST00000417592.2,ENST00000581790.1,ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29670026:29670153:29676137:29676269:29677200:29677336,	29676138	29676269	29676209	29676209	Frame_Shift_Del	A	-	p.N2421fs
LUAD	TCGA-73-4677-01	MELK	ENST00000541717.1	chr9	36657237:36657360:36665346:36665578:36669306:36669403,36651742:36651874:36665346:36665578:36669306:36669403,	36665347	36665578	36665487	36665488	Frame_Shift_Del	TA	-	p.FM407fs
LUAD	TCGA-73-4677-01	NEDD4	ENST00000513957.1,ENST00000435532.3	chr15	56243573:56243612:56243708:56243787:56258670:56258744,	56243709	56243787	56243739	56243739	Frame_Shift_Del	A	-	p.L56fs
LUAD	TCGA-75-5122-01	ABCA13	ENST00000544596.1,ENST00000411975.1,ENST00000453246.1,ENST00000435803.1	chr7	48545931:48545986:48547467:48547645:48550679:48550795,	48547468	48547645	48547627	48547627	Frame_Shift_Del	A	-	p.T4502fs
LUAD	TCGA-75-5122-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764945	13764946	Frame_Shift_Ins	-	A	p.E94fs
LUAD	TCGA-75-5125-01	EBP	ENST00000498425.1	chrX	48380256:48380295:48382141:48382460:48385376:48385413,	48382142	48382460	48382369	48382370	Frame_Shift_Ins	-	GT	p.V71fs
LUAD	TCGA-75-5125-01	EBP	ENST00000276096.6	chrX	48380256:48380295:48382310:48382460:48385376:48385413,	48382311	48382460	48382369	48382370	Frame_Shift_Ins	-	GT	p.V71fs
LUAD	TCGA-75-5126-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661474	230661475	Frame_Shift_Ins	-	A	p.R1142fs
LUAD	TCGA-75-5126-01	ANKMY1	ENST00000401804.1,ENST00000361678.4,ENST00000373320.4,ENST00000391987.1,ENST00000406958.1,ENST00000405523.3	chr2	241494395:241494472:241496606:241496769:241500147:241500185,241494395:241494472:241496606:241496769:241497720:241498036,241494395:241494472:241496606:241496769:241497297:241497379,	241496607	241496769	241496731	241496731	Frame_Shift_Del	G	-	p.L8fs
LUAD	TCGA-75-5146-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390533	197390533	Frame_Shift_Del	C	-	p.F525fs
LUAD	TCGA-75-5146-01	LRIG1	ENST00000383703.3,ENST00000273261.3,ENST00000497721.1,ENST00000498287.1	chr3	66463349:66463438:66465343:66465487:66467552:66467690,	66465344	66465487	66465421	66465422	Frame_Shift_Ins	-	A	p.P190fs
LUAD	TCGA-75-5146-01	TBC1D1	ENST00000261439.4,ENST00000510573.2,ENST00000508802.1	chr4	38055819:38055959:38091552:38091738:38097549:38097711,	38091553	38091738	38091623	38091623	Frame_Shift_Del	C	-	p.G707fs
LUAD	TCGA-75-6206-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220465	1220466	Frame_Shift_Ins	-	G	p.W187fs
LUAD	TCGA-75-6211-01	MANBA	ENST00000226578.4,ENST00000514430.1	chr4	103635594:103635718:103644027:103644198:103645018:103645041,	103644028	103644198	103644031	103644031	Frame_Shift_Del	C	-	p.R182fs
LUAD	TCGA-75-6211-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579481	7579482	Frame_Shift_Ins	-	C	p.C69fs
LUAD	TCGA-75-6211-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67937113	67937113	Frame_Shift_Del	G	-	p.Q39fs
LUAD	TCGA-75-6212-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LUAD	TCGA-75-6214-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000350210.2	chr1	155218195:155218264:155220066:155220612:155220885:155220955,	155220067	155220612	155220573	155220573	Frame_Shift_Del	C	-	p.G335fs
LUAD	TCGA-75-6214-01	FAM189B	ENST00000368366.1	chr1	155218195:155218264:155220066:155220720:155220885:155220955,	155220067	155220720	155220573	155220573	Frame_Shift_Del	C	-	p.G335fs
LUAD	TCGA-75-6214-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099354	168099354	Frame_Shift_Del	C	-	p.V484fs
LUAD	TCGA-75-6214-01	ATR	ENST00000350721.4	chr3	142278092:142278283:142279104:142279296:142280084:142280238,	142279105	142279296	142279124	142279124	Frame_Shift_Del	A	-	p.S508fs
LUAD	TCGA-75-6214-01	DOCK2	ENST00000256935.8,ENST00000520908.1,ENST00000523351.1,ENST00000540750.1,ENST00000524185.1	chr5	169230061:169230210:169267760:169267856:169410071:169410170,	169267761	169267856	169267840	169267840	Frame_Shift_Del	G	-	p.R928fs
LUAD	TCGA-75-6214-01	ADCY7	ENST00000538642.1,ENST00000394697.2,ENST00000537579.1,ENST00000254235.3,ENST00000566433.2,ENST00000567277.2	chr16	50322037:50322261:50324367:50324571:50325646:50325808,	50324368	50324571	50324508	50324508	Frame_Shift_Del	G	-	p.L104fs
LUAD	TCGA-75-7027-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449548	85449549	Frame_Shift_Ins	-	A	p.E326fs
LUAD	TCGA-75-7027-01	EYA2	ENST00000327619.5,ENST00000497062.2,ENST00000317304.6	chr20	45801354:45801515:45808445:45808560:45809462:45809584,	45808446	45808560	45808534	45808535	Frame_Shift_Ins	-	A	p.G430fs
LUAD	TCGA-75-7031-01	CD200	ENST00000473539.1	chr3	112052024:112052071:112054789:112054864:112059748:112059830,	112054790	112054864	112054808	112054808	Frame_Shift_Del	G	-	p.G12fs
LUAD	TCGA-75-7031-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437372	122437373	Frame_Shift_Ins	-	A	p.*1459fs
LUAD	TCGA-78-7145-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255576	156255576	Frame_Shift_Del	G	-	p.G188fs
LUAD	TCGA-78-7145-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255576	156255576	Frame_Shift_Del	G	-	p.G188fs
LUAD	TCGA-78-7145-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255576	156255576	Frame_Shift_Del	G	-	p.G188fs
LUAD	TCGA-78-7145-01	TP53AIP1	ENST00000527504.1	chr11	128806432:128806544:128806656:128807729:128812688:128812822,	128806657	128807729	128807581	128807582	Frame_Shift_Del	GT	-	p.TP44fs
LUAD	TCGA-78-7145-01	TP53AIP1	ENST00000531399.1	chr11	128806432:128806544:128807572:128807789:128812688:128812822,	128807573	128807789	128807581	128807582	Frame_Shift_Del	GT	-	p.TP44fs
LUAD	TCGA-78-7146-01	EPHX1	ENST00000445856.1,ENST00000272167.5,ENST00000366837.4,ENST00000448202.1	chr1	226016543:226016613:226019479:226019660:226026354:226026398,	226019480	226019660	226019484	226019485	Frame_Shift_Ins	-	A	p.S63fs
LUAD	TCGA-78-7146-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463043	5463043	Frame_Shift_Del	G	-	p.Q325fs
LUAD	TCGA-78-7146-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600380	10600380	Frame_Shift_Del	G	-	p.P492fs
LUAD	TCGA-78-7147-01	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	33976900:33977000:34006090:34006173:34009940:34010031,	34006091	34006173	34006128	34006129	Frame_Shift_Ins	-	A	p.M120fs
LUAD	TCGA-78-7147-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48232051:48232186:48234186:48234390:48237138:48237211,	48234187	48234390	48234288	48234288	Frame_Shift_Del	G	-	p.L661fs
LUAD	TCGA-78-7147-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67938187	67938187	Frame_Shift_Del	G	-	p.V397fs
LUAD	TCGA-78-7148-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
LUAD	TCGA-78-7148-01	LZTS1	ENST00000381569.1,ENST00000522290.1,ENST00000265801.6	chr8	20107622:20107874:20110292:20111096:20112347:20112692,	20110293	20111096	20110819	20110819	Frame_Shift_Del	C	-	p.G208fs
LUAD	TCGA-78-7149-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000454583.2,ENST00000243326.5,ENST00000453091.2	chr2	152326224:152326378:152330477:152330586:152331370:152331733,	152330478	152330586	152330523	152330524	Frame_Shift_Ins	-	A	p.K2381fs
LUAD	TCGA-78-7150-01	HCLS1	ENST00000314583.3,ENST00000473883.1,ENST00000428394.2	chr3	121350947:121351031:121351178:121351410:121351913:121352018,	121351179	121351410	121351394	121351394	Frame_Shift_Del	G	-	p.P342fs
LUAD	TCGA-78-7150-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
LUAD	TCGA-78-7150-01	MMRN2	ENST00000372027.5	chr10	88695296:88696882:88702073:88703885:88704018:88704192,	88702074	88703885	88703746	88703746	Frame_Shift_Del	G	-	p.D265fs
LUAD	TCGA-78-7152-01	SLC26A7	ENST00000522181.1	chr8	92330443:92330608:92346522:92346675:92352631:92352779,	92346523	92346675	92346585	92346585	Frame_Shift_Del	G	-	p.L236fs
LUAD	TCGA-78-7152-01	KITLG	ENST00000228280.5,ENST00000347404.5,ENST00000378535.4	chr12	88910110:88910267:88912473:88912644:88926217:88926280,	88912474	88912644	88912534	88912534	Frame_Shift_Del	T	-	p.I101fs
LUAD	TCGA-78-7154-01	CEP68	ENST00000377990.2,ENST00000546106.1,ENST00000260569.4	chr2	65283598:65283662:65296532:65296935:65298587:65298750,	65296533	65296935	65296785	65296786	Frame_Shift_Ins	-	A	p.*70fs
LUAD	TCGA-78-7154-01	GRIPAP1	ENST00000376425.3,ENST00000376441.1	chrX	48847337:48847522:48849839:48849990:48853661:48853769,	48849840	48849990	48849862	48849863	Frame_Shift_Del	TG	-	p.T145fs
LUAD	TCGA-78-7155-01	HENMT1	ENST00000493676.1	chr1	109193651:109193831:109197337:109197472:109200072:109200196,	109197338	109197472	109197453	109197453	Frame_Shift_Del	G	-	p.L95fs
LUAD	TCGA-78-7155-01	C1orf61	ENST00000310027.5,ENST00000357975.4	chr1	156374299:156374393:156384445:156384545:156396589:156396664,156377645:156377767:156384445:156384545:156386560:156386656,156377645:156377767:156384445:156384545:156389962:156390081,156374299:156374393:156384445:156384545:156391346:156391544,156377645:156377767:156384445:156384545:156396589:156396664,	156384446	156384545	156384451	156384451	Frame_Shift_Del	G	-	p.R56fs
LUAD	TCGA-78-7155-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005349	150005349	Frame_Shift_Del	T	-	p.P293fs
LUAD	TCGA-78-7155-01	ADCYAP1R1	ENST00000409363.1	chr7	31104446:31104552:31117605:31117713:31123755:31123865,	31117606	31117713	31117644	31117644	Frame_Shift_Del	C	-	p.P66fs
LUAD	TCGA-78-7155-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000457718.1	chr7	47385784:47385954:47407961:47409218:47436396:47436501,	47407962	47409218	47407966	47407966	Frame_Shift_Del	C	-	p.R759fs
LUAD	TCGA-78-7155-01	RECK	ENST00000377966.3	chr9	36083361:36083559:36087690:36087958:36091160:36091340,	36087691	36087958	36087832	36087833	Frame_Shift_Del	TT	-	p.L260fs
LUAD	TCGA-78-7155-01	APBB1IP	ENST00000376236.4	chr10	26822367:26822454:26825002:26825146:26830510:26830621,	26825003	26825146	26825135	26825135	Frame_Shift_Del	G	-	p.G345fs
LUAD	TCGA-78-7155-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000559711.1,ENST00000559257.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000539772.1,ENST00000538686.2,ENST00000561326.1,ENST00000559192.1,ENST00000540797.1	chr15	63855093:63855207:63862631:63862778:63866244:63866351,	63862632	63862778	63862705	63862705	Frame_Shift_Del	G	-	p.G257fs
LUAD	TCGA-78-7155-01	LRP5L	ENST00000402859.2,ENST00000444995.3,ENST00000402785.2	chr22	25750723:25750779:25753221:25753393:25755793:25756156,	25753222	25753393	25753294	25753294	Frame_Shift_Del	C	-	p.W122fs
LUAD	TCGA-78-7155-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51160242	51160242	Frame_Shift_Del	C	-	p.G1313fs
LUAD	TCGA-78-7156-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600425	10600425	Frame_Shift_Del	C	-	p.G477fs
LUAD	TCGA-78-7158-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
LUAD	TCGA-78-7158-01	ZIC4	ENST00000525172.2,ENST00000473123.1,ENST00000484399.1,ENST00000425731.3,ENST00000383075.3	chr3	147108717:147109033:147113638:147114256:147120514:147120599,	147113639	147114256	147114028	147114028	Frame_Shift_Del	C	-	p.G100fs
LUAD	TCGA-78-7158-01	TAF4	ENST00000252996.4,ENST00000436129.2	chr20	60578786:60578934:60581565:60581814:60582602:60582617,	60581566	60581814	60581656	60581656	Frame_Shift_Del	G	-	p.A711fs
LUAD	TCGA-78-7158-01	TAF4	ENST00000488539.1	chr20	60578786:60578934:60581601:60581814:60582602:60582617,	60581602	60581814	60581656	60581656	Frame_Shift_Del	G	-	p.A711fs
LUAD	TCGA-78-7159-01	ALDH1L1	ENST00000393431.2	chr3	125831624:125831723:125836847:125836941:125843206:125843294,	125836848	125836941	125836866	125836866	Frame_Shift_Del	C	-	p.G655fs
LUAD	TCGA-78-7159-01	PCDH7	ENST00000543491.1	chr4	30726062:30726218:30921774:30921991:31144094:31144353,	30921775	30921991	30921902	30921903	Frame_Shift_Ins	-	A	p.Q1101fs
LUAD	TCGA-78-7159-01	PCDH7	ENST00000511884.2	chr4	30726062:30726218:30921774:30921967:31144094:31144353,	30921775	30921967	30921902	30921903	Frame_Shift_Ins	-	A	p.Q1101fs
LUAD	TCGA-78-7159-01	ITGA8	ENST00000378076.3	chr10	15702877:15702921:15713601:15713646:15714622:15714748,	15713602	15713646	15713635	15713636	Frame_Shift_Ins	-	A	p.C272fs
LUAD	TCGA-78-7159-01	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108114679:108114845:108115514:108115753:108117690:108117854,	108115515	108115753	108115600	108115601	Frame_Shift_Del	CG	-	p.R250fs
LUAD	TCGA-78-7162-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789322	150789326	Frame_Shift_Del	GTTGG	-	p.TQQ580fs
LUAD	TCGA-78-7162-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775275	23775275	Frame_Shift_Del	A	-	p.E179fs
LUAD	TCGA-78-7162-01	GRB10	ENST00000401949.1,ENST00000402578.1,ENST00000439599.1,ENST00000402497.1,ENST00000335866.3,ENST00000398810.2,ENST00000398812.2,ENST00000403097.1,ENST00000407526.1,ENST00000406641.1,ENST00000357271.5	chr7	50694518:50694675:50737418:50737560:50742132:50742355,	50737419	50737560	50737429	50737430	Frame_Shift_Ins	-	C	p.R159fs
LUAD	TCGA-78-7163-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
LUAD	TCGA-78-7166-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451804	155451804	Frame_Shift_Del	T	-	p.D286fs
LUAD	TCGA-78-7166-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000504194.1,ENST00000382788.3,ENST00000338806.4	chr4	3429825:3429896:3430284:3430438:3432133:3432174,	3430285	3430438	3430399	3430399	Frame_Shift_Del	A	-	p.K1178fs
LUAD	TCGA-78-7166-01	DTWD2	ENST00000510708.1,ENST00000304058.4	chr5	118175973:118176782:118183784:118183913:118264231:118264424,	118183785	118183913	118183864	118183864	Frame_Shift_Del	G	-	p.P150fs
LUAD	TCGA-78-7220-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36674150:36674193:36676993:36677286:36679728:36679962,	36676994	36677286	36677122	36677122	Frame_Shift_Del	C	-	p.V232fs
LUAD	TCGA-78-7220-01	GRIA4	ENST00000428631.2,ENST00000525187.1,ENST00000393127.2,ENST00000530497.1,ENST00000393125.2,ENST00000525032.1,ENST00000282499.5	chr11	105483002:105483161:105623706:105623946:105732749:105732934,	105623707	105623946	105623944	105623944	Frame_Shift_Del	G	-	p.R162fs
LUAD	TCGA-78-7220-01	RPRD1B	ENST00000495457.1	chr20	36662233:36662500:36668836:36668966:36685933:36686046,	36668837	36668966	36668900	36668900	Frame_Shift_Del	G	-	p.R72fs
LUAD	TCGA-78-7535-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237139	33237139	Frame_Shift_Del	T	-	p.F787fs
LUAD	TCGA-78-7535-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696953	17696954	Frame_Shift_Ins	-	A	p.G231fs
LUAD	TCGA-78-7535-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
LUAD	TCGA-78-7536-01	ARPP21	ENST00000417925.1,ENST00000337271.5,ENST00000444190.1,ENST00000458225.1,ENST00000187397.4	chr3	35725217:35725307:35729230:35729375:35730798:35730877,	35729231	35729375	35729270	35729270	Frame_Shift_Del	C	-	p.Q101fs
LUAD	TCGA-78-7536-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000544260.1,ENST00000521772.1,ENST00000381869.3,ENST00000262102.6,ENST00000518713.1,ENST00000381861.3,ENST00000517413.1	chr8	17512072:17512175:17513371:17513574:17532694:17532761,	17513372	17513574	17513510	17513510	Frame_Shift_Del	T	-	p.E936fs
LUAD	TCGA-78-7536-01	STRBP	ENST00000348403.5,ENST00000447404.2,ENST00000360998.3	chr9	125932180:125932325:125935955:125936121:125941285:125941506,	125935956	125936121	125935997	125935997	Frame_Shift_Del	G	-	p.L118fs
LUAD	TCGA-78-7536-01	STRBP	ENST00000407982.2	chr9	125932180:125932325:125935955:125936113:125941285:125941506,	125935956	125936113	125935997	125935997	Frame_Shift_Del	G	-	p.L118fs
LUAD	TCGA-78-7536-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736719	4736719	Frame_Shift_Del	C	-	p.G450fs
LUAD	TCGA-78-7536-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072546	60072547	Frame_Shift_Ins	-	TA	p.Q716fs
LUAD	TCGA-78-7537-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209788321:209788752:209789815:209789969:209790754:209790922,	209789816	209789969	209789849	209789850	Frame_Shift_Ins	-	A	p.L1116fs
LUAD	TCGA-78-7537-01	AARS2	ENST00000244571.4	chr6	44274985:44275131:44278035:44278180:44278730:44278898,	44278036	44278180	44278144	44278144	Frame_Shift_Del	C	-	p.R262fs
LUAD	TCGA-78-7537-01	MED16	ENST00000592943.1,ENST00000312090.6,ENST00000395808.3,ENST00000325464.1,ENST00000589119.1,ENST00000269814.4,ENST00000606248.1	chr19	886054:886201:889637:889807:890136:890423,	889638	889807	889717	889717	Frame_Shift_Del	C	-	p.G123fs
LUAD	TCGA-78-7537-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220432	1220432	Frame_Shift_Del	G	-	p.K175fs
LUAD	TCGA-78-7539-01	RGR	ENST00000483660.1,ENST00000359452.4,ENST00000483771.1	chr10	86014081:86014199:86017648:86017762:86018263:86018338,	86017649	86017762	86017689	86017689	Frame_Shift_Del	G	-	p.W228fs
LUAD	TCGA-78-7539-01	RAPGEF3	ENST00000548919.1,ENST00000549151.1	chr12	48145698:48145752:48151648:48151861:48164639:48164817,	48151649	48151861	48151827	48151830	Frame_Shift_Del	CCCA	-	p.VG13fs
LUAD	TCGA-78-7539-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4	chr14	94847207:94847478:94848928:94849578:94854896:94854926,	94848929	94849578	94849053	94849053	Frame_Shift_Del	G	-	p.T174fs
LUAD	TCGA-78-7542-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82837339	82837340	Frame_Shift_Del	AC	-	p.GH2839fs
LUAD	TCGA-78-7542-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43844143:43844315:43849744:43849851:43853496:43853616,	43849745	43849851	43849817	43849817	Frame_Shift_Del	A	-	p.L574fs
LUAD	TCGA-78-7542-01	CEP128	ENST00000281129.3,ENST00000555265.1	chr14	81259103:81259454:81297486:81297638:81302548:81302680,	81297487	81297638	81297530	81297531	Frame_Shift_Ins	-	A	p.E389fs
LUAD	TCGA-78-8640-01	ABCG8	ENST00000272286.2	chr2	44071645:44071747:44073293:44073450:44078722:44078961,	44073294	44073450	44073420	44073420	Frame_Shift_Del	G	-	p.G98fs
LUAD	TCGA-78-8640-01	HTR3A	ENST00000502622.1,ENST00000355556.2,ENST00000504030.2,ENST00000299961.5,ENST00000506841.2,ENST00000375498.2	chr11	113853841:113854011:113856736:113856897:113857239:113857450,	113856737	113856897	113856784	113856785	Frame_Shift_Ins	-	C	p.R198fs
LUAD	TCGA-78-8660-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319215	54319224	Frame_Shift_Del	GACCGTGATC	-	p.DRDR472fs
LUAD	TCGA-78-8660-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319215	54319224	Frame_Shift_Del	GACCGTGATC	-	p.DRDR472fs
LUAD	TCGA-78-8662-01	GLUL	ENST00000311223.5,ENST00000339526.4,ENST00000461447.1,ENST00000463851.2,ENST00000417584.2,ENST00000331872.6	chr1	182353549:182353858:182354491:182354691:182354894:182354977,	182354492	182354691	182354607	182354608	Frame_Shift_Del	CA	-	p.CE229fs
LUAD	TCGA-78-8662-01	HNRNPUL1	ENST00000595806.1,ENST00000378215.4,ENST00000352456.3	chr19	41810147:41810166:41811550:41811772:41812353:41812830,	41811551	41811772	41811694	41811695	Frame_Shift_Ins	-	A	p.P793fs
LUAD	TCGA-78-8662-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000595018.1,ENST00000263367.3,ENST00000593587.1	chr19	41810147:41810166:41811580:41811772:41812353:41812830,	41811581	41811772	41811694	41811695	Frame_Shift_Ins	-	A	p.P793fs
LUAD	TCGA-78-8662-01	L3MBTL1	ENST00000468336.1,ENST00000430781.2,ENST00000427442.2,ENST00000418998.1,ENST00000444063.1,ENST00000473981.1,ENST00000373134.1,ENST00000373135.3	chr20	42143347:42143416:42143648:42143799:42143931:42144055,	42143649	42143799	42143689	42143689	Frame_Shift_Del	C	-	p.D91fs
LUAD	TCGA-80-5611-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49946685:49946833:49947551:49948317:49950652:49950792,49946685:49946833:49947551:49948317:49948958:49949444,	49947552	49948317	49947983	49947984	Frame_Shift_Del	GC	-	p.R324fs
LUAD	TCGA-80-5611-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99894011	99894011	Frame_Shift_Del	T	-	p.K546fs
LUAD	TCGA-80-5611-01	HHIPL1	ENST00000357223.2	chr14	100111479:100111799:100118560:100119207:100123336:100123480,	100118561	100119207	100118840	100118840	Frame_Shift_Del	A	-	p.K179fs
LUAD	TCGA-83-5908-01	PLCH2	ENST00000449969.1,ENST00000378486.3,ENST00000343889.4,ENST00000419816.2	chr1	2428266:2428449:2428940:2429048:2429961:2430086,	2428941	2429048	2429009	2429009	Frame_Shift_Del	G	-	p.G702fs
LUAD	TCGA-83-5908-01	HHIPL2	ENST00000343410.6	chr1	222715353:222715497:222716878:222717531:222721065:222721445,	222716879	222717531	222717109	222717109	Frame_Shift_Del	C	-	p.G248fs
LUAD	TCGA-83-5908-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099314	168099314	Frame_Shift_Del	A	-	p.Q471fs
LUAD	TCGA-86-6851-01	CDC7	ENST00000428239.1,ENST00000234626.6,ENST00000430031.2	chr1	91978683:91978864:91979504:91979600:91980375:91980554,	91979505	91979600	91979544	91979544	Frame_Shift_Del	G	-	p.G288fs
LUAD	TCGA-86-6851-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152289590:152289742:152291976:152292094:152293340:152293400,	152291977	152292094	152292047	152292048	Frame_Shift_Ins	-	T	p.R383fs
LUAD	TCGA-86-6851-01	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33549311:33549488:33561131:33561284:33576158:33577265,	33561132	33561284	33561259	33561260	Frame_Shift_Ins	-	T	p.L1333fs
LUAD	TCGA-86-6851-01	POP1	ENST00000349693.3,ENST00000401707.2	chr8	99146176:99146264:99146699:99146887:99148709:99148966,	99146700	99146887	99146751	99146751	Frame_Shift_Del	T	-	p.L292fs
LUAD	TCGA-86-6851-01	SGCA	ENST00000344627.6,ENST00000543315.1,ENST00000262018.3,ENST00000513821.1	chr17	48244728:48244848:48244942:48245097:48245307:48245380,	48244943	48245097	48245032	48245033	Frame_Shift_Ins	-	A	p.P83fs
LUAD	TCGA-86-7701-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508369	71508370	Frame_Shift_Ins	-	A	p.K169fs
LUAD	TCGA-86-7701-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220410	1220410	Frame_Shift_Del	A	-	p.H168fs
LUAD	TCGA-86-7714-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098880	47098881	Frame_Shift_Ins	-	T	p.QG2131fs
LUAD	TCGA-86-7714-01	PPP2R5B	ENST00000164133.2	chr11	64699030:64699081:64699220:64699340:64700236:64700364,	64699221	64699340	64699334	64699334	Frame_Shift_Del	T	-	p.H370fs
LUAD	TCGA-86-7714-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000531691.1,ENST00000525566.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000526266.1,ENST00000531689.1,ENST00000354940.6,ENST00000527688.1,ENST00000526580.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1,ENST00000527335.1	chr12	104705067:104705190:104707022:104707095:104709554:104709604,	104707023	104707095	104707093	104707093	Frame_Shift_Del	G	-	p.W105fs
LUAD	TCGA-86-7953-01	TCERG1L	ENST00000483040.1	chr10	132932641:132932711:132944768:132944923:132961384:132961473,132932641:132932711:132944768:132944923:132954282:132954552,	132944769	132944923	132944796	132944796	Frame_Shift_Del	G	-	p.H388fs
LUAD	TCGA-86-7953-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579329	7579345	Frame_Shift_Del	TGGCTGTCCCAGAATGC	-	p.LHSGTAK114fs
LUAD	TCGA-86-7954-01	RFX5	ENST00000290524.4,ENST00000368870.2,ENST00000452513.2,ENST00000392746.3,ENST00000452671.2,ENST00000436637.1	chr1	151315817:151315918:151316156:151316358:151316672:151316754,	151316157	151316358	151316295	151316295	Frame_Shift_Del	G	-	p.L207fs
LUAD	TCGA-86-7954-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181822	154181822	Frame_Shift_Del	G	-	p.G582fs
LUAD	TCGA-86-7955-01	LMNA	ENST00000498722.2,ENST00000368299.3,ENST00000361308.4,ENST00000368297.1,ENST00000448611.2,ENST00000368301.2,ENST00000392353.3,ENST00000368300.4,ENST00000473598.2	chr1	156106711:156106819:156106903:156107023:156107444:156107534,	156106904	156107023	156106935	156106936	Frame_Shift_Ins	-	C	p.T507fs
LUAD	TCGA-86-7955-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168105918	168105918	Frame_Shift_Del	T	-	p.A2672fs
LUAD	TCGA-86-7955-01	COL5A3	ENST00000264828.3	chr19	10077211:10077422:10078022:10078076:10078579:10078615,	10078023	10078076	10078061	10078061	Frame_Shift_Del	G	-	p.R1474fs
LUAD	TCGA-86-8054-01	NLRP12	ENST00000492915.1,ENST00000391775.3	chr19	54296996:54297390:54299112:54299283:54301496:54301667,54296996:54297390:54299112:54299283:54304480:54304651,	54299113	54299283	54299173	54299174	Frame_Shift_Ins	-	T	p.R1013fs
LUAD	TCGA-86-8054-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18301310	18301310	Frame_Shift_Del	G	-	p.Q1373fs
LUAD	TCGA-86-8055-01	DYNC1I2	ENST00000409773.1,ENST00000445378.1,ENST00000409453.1,ENST00000456808.1,ENST00000358002.6,ENST00000409317.1,ENST00000411953.1,ENST00000409197.1	chr2	172544010:172544137:172546656:172546773:172549286:172549404,172544301:172544383:172546656:172546773:172549286:172549404,	172546657	172546773	172546761	172546762	Frame_Shift_Ins	-	A	p.RK32fs
LUAD	TCGA-86-8055-01	ZNF330	ENST00000512738.1	chr4	142142087:142142262:142143519:142143645:142145640:142145660,142142083:142142170:142143519:142143645:142145640:142145660,	142143520	142143645	142143532	142143532	Frame_Shift_Del	A	-	p.K5fs
LUAD	TCGA-86-8055-01	ZNF330	ENST00000507532.1	chr4	142142087:142142262:142143519:142143631:142145640:142145660,	142143520	142143631	142143532	142143532	Frame_Shift_Del	A	-	p.K5fs
LUAD	TCGA-86-8056-01	MLPH	ENST00000437893.1	chr2	238428621:238428672:238434243:238434448:238443206:238443290,	238434244	238434448	238434334	238434335	Frame_Shift_Ins	-	C	p.P256fs
LUAD	TCGA-86-8073-01	C3orf62	ENST00000436325.1	chr3	49311481:49311573:49313859:49314274:49314618:49314652,	49313860	49314274	49313910	49313911	Frame_Shift_Del	CT	-	p.E132fs
LUAD	TCGA-86-8073-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133898781	133898781	Frame_Shift_Del	G	-	p.L388fs
LUAD	TCGA-86-8073-01	ST8SIA6	ENST00000377602.4	chr10	17363188:17363345:17365063:17365156:17369012:17369108,	17365064	17365156	17365095	17365096	Frame_Shift_Ins	-	A	p.D233fs
LUAD	TCGA-86-8073-01	MS4A3	ENST00000358152.2	chr11	59824175:59824213:59828618:59828789:59831734:59831791,	59828619	59828789	59828704	59828704	Frame_Shift_Del	C	-	p.A24fs
LUAD	TCGA-86-8073-01	RPTOR	ENST00000570891.1,ENST00000306801.3,ENST00000577161.1,ENST00000544334.2	chr17	78519465:78519591:78599490:78599593:78617527:78617610,	78599491	78599593	78599530	78599531	Frame_Shift_Ins	-	T	p.W68fs
LUAD	TCGA-86-8073-01	LIPG	ENST00000427224.2,ENST00000577628.1,ENST00000580036.1,ENST00000261292.4	chr18	47091686:47091868:47093811:47093991:47095806:47095918,	47093812	47093991	47093908	47093909	Frame_Shift_Ins	-	T	p.G126fs
LUAD	TCGA-86-8073-01	ZNF813	ENST00000396403.4	chr19	53987003:53987091:53989885:53990012:53993628:53993832,	53989886	53990012	53989935	53989935	Frame_Shift_Del	G	-	p.W22fs
LUAD	TCGA-86-8073-01	APOL1	ENST00000426053.1	chr22	36650982:36651045:36653364:36653453:36657641:36657679,	36653365	36653453	36653416	36653416	Frame_Shift_Del	G	-	p.K66fs
LUAD	TCGA-86-8075-01	PTDSS2	ENST00000526878.1	chr11	489882:490068:490419:490642:491120:491393,	490420	490642	490555	490555	Frame_Shift_Del	G	-	p.E479fs
LUAD	TCGA-86-8075-01	P2RX6	ENST00000443995.3,ENST00000432930.1,ENST00000442475.1,ENST00000401443.1,ENST00000422210.1,ENST00000336296.2,ENST00000413302.2,ENST00000402329.3	chr22	21380299:21380365:21380540:21380618:21380708:21380886,	21380541	21380618	21380547	21380547	Frame_Shift_Del	T	-	p.F354fs
LUAD	TCGA-86-8075-01	P2RX6	ENST00000487342.1	chr22	21380093:21380187:21380299:21380618:21380708:21380865,	21380300	21380618	21380547	21380547	Frame_Shift_Del	T	-	p.F354fs
LUAD	TCGA-86-8279-01	CD53	ENST00000476408.1	chr1	111434013:111434093:111434966:111435155:111436948:111437023,111434013:111434093:111434966:111435155:111441745:111441938,	111434967	111435155	111435023	111435023	Frame_Shift_Del	C	-	p.F40fs
LUAD	TCGA-86-8280-01	CHEK2	ENST00000448511.1	chr22	29107896:29108005:29115382:29115473:29120964:29121112,29107896:29108005:29115382:29115473:29120873:29120911,	29115383	29115473	29115444	29115444	Frame_Shift_Del	C	-	p.D251fs
LUAD	TCGA-86-8281-01	KIF1A	ENST00000320389.7,ENST00000404283.3,ENST00000498729.2	chr2	241702582:241702763:241705126:241705210:241706331:241706438,	241705127	241705210	241705162	241705163	Frame_Shift_Ins	-	A	p.Q578fs
LUAD	TCGA-86-8281-01	ARHGAP22	ENST00000417912.2,ENST00000374172.1	chr10	49667726:49667934:49687630:49687807:49763507:49763595,	49687631	49687807	49687670	49687670	Frame_Shift_Del	G	-	p.R30fs
LUAD	TCGA-86-8281-01	FAM124A	ENST00000322475.8	chr13	51805483:51805515:51825603:51826337:51854585:51855616,	51825604	51826337	51825780	51825780	Frame_Shift_Del	C	-	p.P94fs
LUAD	TCGA-86-8358-01	ST3GAL5	ENST00000393805.1,ENST00000377332.3,ENST00000393808.3	chr2	86073616:86073686:86074983:86075327:86088303:86088415,	86074984	86075327	86075204	86075204	Frame_Shift_Del	C	-	p.A148fs
LUAD	TCGA-86-8358-01	ST3GAL5	ENST00000306262.5	chr2	86073616:86073686:86074983:86075504:86088303:86088415,	86074984	86075504	86075204	86075204	Frame_Shift_Del	C	-	p.A148fs
LUAD	TCGA-86-8358-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52880880:52881048:52883127:52883299:52884024:52884157,	52883128	52883299	52883238	52883238	Frame_Shift_Del	C	-	p.A185fs
LUAD	TCGA-86-8358-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962662	21962662	Frame_Shift_Del	G	-	p.G479fs
LUAD	TCGA-86-8358-01	MLLT10	ENST00000438473.1	chr10	21959377:21959633:21962569:21962848:21970260:21970305,	21962570	21962848	21962662	21962662	Frame_Shift_Del	G	-	p.G479fs
LUAD	TCGA-86-8358-01	TEX26	ENST00000531960.1,ENST00000380473.3	chr13	31531094:31531166:31540358:31540535:31543021:31543183,	31540359	31540535	31540398	31540398	Frame_Shift_Del	G	-	p.W170fs
LUAD	TCGA-86-8358-01	HERC2	ENST00000261609.7	chr15	28463634:28463817:28465597:28465790:28467173:28467361,	28465598	28465790	28465785	28465785	Frame_Shift_Del	C	-	p.G1886fs
LUAD	TCGA-86-8358-01	TEX2	ENST00000584379.1	chr17	62272254:62272455:62289933:62291602:62340527:62340587,	62289934	62291602	62290280	62290281	Frame_Shift_Ins	-	C	p.E433fs
LUAD	TCGA-86-8359-01	IKZF2	ENST00000434687.1,ENST00000374326.3,ENST00000342002.2,ENST00000453575.1,ENST00000374319.4,ENST00000412444.1,ENST00000457361.1,ENST00000374327.4,ENST00000439848.1	chr2	213872083:213872808:213878514:213878658:213886716:213886854,	213878515	213878658	213878652	213878653	Frame_Shift_Ins	-	GA	p.Y240fs
LUAD	TCGA-86-8359-01	CMSS1	ENST00000478909.1,ENST00000421999.2,ENST00000489081.1,ENST00000491299.1	chr3	99879273:99879345:99881146:99881276:99885178:99885238,	99881147	99881276	99881242	99881243	Frame_Shift_Ins	-	T	p.G108fs
LUAD	TCGA-86-8359-01	ZDHHC11	ENST00000283441.8,ENST00000424784.2,ENST00000507800.1	chr5	837550:837595:840609:840765:843714:843808,	840610	840765	840719	840720	Frame_Shift_Ins	-	G	p.R225fs
LUAD	TCGA-86-8359-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968617	5968618	Frame_Shift_Del	CT	-	p.E538fs
LUAD	TCGA-86-8359-01	ZWINT	ENST00000460654.1	chr10	58118316:58118448:58118565:58118708:58119236:58119293,	58118566	58118708	58118594	58118594	Frame_Shift_Del	C	-	p.A199fs
LUAD	TCGA-86-8585-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104791	168104791	Frame_Shift_Del	C	-	p.P2299fs
LUAD	TCGA-86-8585-01	WDFY1	ENST00000233055.4	chr2	224744840:224744949:224746658:224746789:224749364:224749466,	224746659	224746789	224746769	224746769	Frame_Shift_Del	C	-	p.G318fs
LUAD	TCGA-86-8585-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139609146:139609213:139610961:139611141:139614357:139614402,	139610962	139611141	139611050	139611050	Frame_Shift_Del	C	-	p.G1426fs
LUAD	TCGA-86-8585-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70645962	70645962	Frame_Shift_Del	G	-	p.G804fs
LUAD	TCGA-86-8585-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1264845	1264857	Frame_Shift_Del	CCAGCACTCGACT	-	p.TQHST2248fs
LUAD	TCGA-86-8585-01	TCN1	ENST00000257264.3,ENST00000532419.1	chr11	59630054:59630195:59631379:59631559:59633864:59633944,	59631380	59631559	59631533	59631533	Frame_Shift_Del	G	-	p.L36fs
LUAD	TCGA-86-8669-01	SMC4	ENST00000472282.1,ENST00000344722.5,ENST00000489573.1,ENST00000462787.1,ENST00000360111.2,ENST00000468653.1,ENST00000497984.1,ENST00000357388.3,ENST00000469762.1	chr3	160122286:160122292:160129707:160129872:160130113:160130241,	160129708	160129872	160129830	160129830	Frame_Shift_Del	G	-	p.L270fs
LUAD	TCGA-86-8669-01	NCOA7	ENST00000368357.3,ENST00000392477.2,ENST00000419660.1,ENST00000417494.1	chr6	126136436:126136550:126176165:126176386:126196034:126196114,	126176166	126176386	126176316	126176317	Frame_Shift_Ins	-	A	p.EK67fs
LUAD	TCGA-86-8669-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3,ENST00000411772.1	chr15	43724846:43724875:43730521:43730614:43733723:43733781,	43730522	43730614	43730566	43730582	Frame_Shift_Del	TTGCCTGGCTTCACAGA	-	p.ICEARQ1039fs
LUAD	TCGA-86-8671-01	MTMR14	ENST00000414996.1,ENST00000351233.5,ENST00000353332.5,ENST00000296003.4,ENST00000420925.1	chr3	9726894:9726931:9729504:9729575:9730379:9730438,	9729505	9729575	9729531	9729531	Frame_Shift_Del	G	-	p.L397fs
LUAD	TCGA-86-8672-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168104122	168104122	Frame_Shift_Del	C	-	p.L2074fs
LUAD	TCGA-86-8672-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574006	7574007	Frame_Shift_Ins	-	CTTC	p.IP340fs
LUAD	TCGA-86-8672-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698571	30698571	Frame_Shift_Del	A	-	p.R142fs
LUAD	TCGA-86-8673-01	SMYD3	ENST00000541742.1,ENST00000391836.2,ENST00000470510.1,ENST00000490107.1,ENST00000492487.1,ENST00000464398.1,ENST00000493441.1,ENST00000388985.4,ENST00000366516.1,ENST00000366517.1	chr1	246027110:246027188:246078831:246078942:246091232:246091335,	246078832	246078942	246078839	246078839	Frame_Shift_Del	T	-	p.Q210fs
LUAD	TCGA-86-8673-01	SULT1B1	ENST00000510821.1,ENST00000310613.3	chr4	70615438:70615536:70620387:70620516:70620787:70620919,	70620388	70620516	70620405	70620405	Frame_Shift_Del	G	-	p.P87fs
LUAD	TCGA-86-8673-01	ACOT12	ENST00000307624.3	chr5	80631586:80631720:80638490:80638574:80639636:80639700,	80638491	80638574	80638514	80638514	Frame_Shift_Del	C	-	p.E369fs
LUAD	TCGA-86-8673-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151054719:151055228:151089773:151089874:151107525:151107595,	151089774	151089874	151089793	151089793	Frame_Shift_Del	G	-	p.R144fs
LUAD	TCGA-86-8673-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20199089	20199089	Frame_Shift_Del	C	-	p.D299fs
LUAD	TCGA-86-8673-01	METTL25	ENST00000248306.3,ENST00000552741.1,ENST00000548432.1,ENST00000551645.1	chr12	82870422:82870497:82871059:82871131:82872710:82872945,	82871060	82871131	82871095	82871095	Frame_Shift_Del	G	-	p.L561fs
LUAD	TCGA-86-8673-01	INTS2	ENST00000584967.1,ENST00000583822.1,ENST00000444766.3,ENST00000251334.6	chr17	59955341:59955449:59958367:59958532:59962261:59962366,	59958368	59958532	59958393	59958394	Frame_Shift_Ins	-	T	p.T751fs
LUAD	TCGA-86-8673-01	MGAT5B	ENST00000374998.3,ENST00000569840.2,ENST00000565675.1	chr17	74864905:74865179:74868932:74869045:74878232:74878380,	74868933	74869045	74869014	74869014	Frame_Shift_Del	G	-	p.L50fs
LUAD	TCGA-86-8674-01	MDC1	ENST00000376406.3	chr6	30675160:30675231:30675342:30676134:30679188:30679281,	30675343	30676134	30675822	30675825	Frame_Shift_Del	TCTG	-	p.TD844fs
LUAD	TCGA-86-8674-01	MSR1	ENST00000445506.2,ENST00000355282.2,ENST00000381998.4,ENST00000350896.3,ENST00000262101.5	chr8	16021573:16021760:16025966:16026379:16032695:16032809,	16025967	16026379	16026001	16026001	Frame_Shift_Del	C	-	p.G199fs
LUAD	TCGA-86-8674-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7774300:7774440:7776884:7777054:7780583:7780721,	7776885	7777054	7776943	7776965	Frame_Shift_Del	TCTCTAGACCACCACATTGTGAC	-	p.SLDHHIVT616fs
LUAD	TCGA-86-A456-01	HNF4G	ENST00000354370.1	chr8	76402323:76402443:76456045:76456214:76459821:76459916,	76456046	76456214	76456080	76456081	Frame_Shift_Del	AG	-	p.TD41fs
LUAD	TCGA-86-A456-01	CD44	ENST00000352818.4	chr11	35208408:35208447:35211381:35211612:35236398:35236408,35208408:35208447:35211381:35211612:35240862:35240934,	35211382	35211612	35211532	35211532	Frame_Shift_Del	A	-	p.Y196fs
LUAD	TCGA-86-A456-01	CRLF3	ENST00000324238.6	chr17	29124328:29124416:29130918:29131126:29151540:29151689,	29130919	29131126	29131027	29131027	Frame_Shift_Del	G	-	p.L78fs
LUAD	TCGA-86-A4JF-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
LUAD	TCGA-86-A4JF-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048867	42048868	Frame_Shift_Ins	-	G	p.R534fs
LUAD	TCGA-86-A4JF-01	PPOX	ENST00000539753.1	chr1	161136889:161137024:161140198:161140309:161140409:161140559,161138782:161138973:161140198:161140309:161140409:161140559,161139695:161139814:161140198:161140309:161140409:161140559,161139474:161139510:161140198:161140309:161140409:161140559,	161140199	161140309	161140288	161140288	Frame_Shift_Del	C	-	p.S359fs
LUAD	TCGA-86-A4JF-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070101	197070102	Frame_Shift_Ins	-	T	p.S2760fs
LUAD	TCGA-86-A4JF-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557490	214557491	Frame_Shift_Ins	-	T	p.P570fs
LUAD	TCGA-86-A4JF-01	UGP2	ENST00000467648.2,ENST00000337130.5,ENST00000445915.2,ENST00000394417.2	chr2	64113474:64113672:64114535:64114778:64117214:64117319,	64114536	64114778	64114558	64114561	Frame_Shift_Del	TCAT	-	p.VI365fs
LUAD	TCGA-86-A4JF-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650549	71650549	Frame_Shift_Del	A	-	p.E1302fs
LUAD	TCGA-86-A4JF-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000469573.1,ENST00000263915.3,ENST00000446413.2	chr2	165378489:165378627:165381513:165381588:165383523:165383645,	165381514	165381588	165381579	165381580	Frame_Shift_Ins	-	A	p.R205fs
LUAD	TCGA-86-A4JF-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210558734	210558734	Frame_Shift_Del	A	-	p.K614fs
LUAD	TCGA-86-A4JF-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210558734	210558734	Frame_Shift_Del	A	-	p.K614fs
LUAD	TCGA-86-A4JF-01	HGD	ENST00000494453.1	chr3	120352118:120352175:120357301:120357428:120360435:120360540,120352180:120352437:120357301:120357428:120360435:120360540,	120357302	120357428	120357337	120357338	Frame_Shift_Ins	-	C	p.C324fs
LUAD	TCGA-86-A4JF-01	ACTL6A	ENST00000450518.2,ENST00000468767.2,ENST00000429709.2,ENST00000494843.1,ENST00000392662.1,ENST00000487978.1	chr3	179287611:179287688:179287854:179288029:179291156:179291257,	179287855	179288029	179288016	179288016	Frame_Shift_Del	A	-	p.L88fs
LUAD	TCGA-86-A4JF-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984974	36984974	Frame_Shift_Del	A	-	p.I564fs
LUAD	TCGA-86-A4JF-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
LUAD	TCGA-86-A4JF-01	LRCH4	ENST00000485071.1,ENST00000476881.1,ENST00000497245.1,ENST00000467201.1,ENST00000485554.1,ENST00000310300.6	chr7	100173327:100173405:100173493:100173631:100173860:100173946,	100173494	100173631	100173512	100173515	Frame_Shift_Del	ATGG	-	p.IH585fs
LUAD	TCGA-86-A4JF-01	CPED1	ENST00000310396.5	chr7	120907268:120907356:120911337:120911484:120935493:120935652,	120911338	120911484	120911387	120911388	Frame_Shift_Ins	-	A	p.E924fs
LUAD	TCGA-86-A4JF-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
LUAD	TCGA-86-A4JF-01	VIM	ENST00000487938.1,ENST00000544301.1,ENST00000469543.1,ENST00000224237.5,ENST00000421459.2	chr10	17272648:17272709:17275585:17275681:17275768:17275930,	17275586	17275681	17275658	17275658	Frame_Shift_Del	T	-	p.F233fs
LUAD	TCGA-86-A4JF-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Frame_Shift_Del	A	-	p.K158fs
LUAD	TCGA-86-A4JF-01	DCP1B	ENST00000280665.6,ENST00000397173.4,ENST00000543381.1,ENST00000536665.1,ENST00000540622.1	chr12	2061942:2062454:2064597:2064726:2074723:2074859,	2064598	2064726	2064700	2064701	Frame_Shift_Ins	-	T	p.N183fs
LUAD	TCGA-86-A4JF-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14576874	14576874	Frame_Shift_Del	A	-	p.K18fs
LUAD	TCGA-86-A4JF-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95670103	95670103	Frame_Shift_Del	G	-	p.P528fs
LUAD	TCGA-86-A4JF-01	SNX1	ENST00000560260.1	chr15	64415701:64415745:64418277:64418419:64419372:64419451,64404771:64404883:64418277:64418419:64419372:64419451,	64418278	64418419	64418397	64418398	Frame_Shift_Ins	-	C	p.PP210fs
LUAD	TCGA-86-A4JF-01	TUFM	ENST00000313511.3,ENST00000565012.1	chr16	28855272:28855422:28855550:28855655:28855739:28855872,	28855551	28855655	28855558	28855559	Frame_Shift_Del	CA	-	p.V306fs
LUAD	TCGA-86-A4JF-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579420	7579420	Frame_Shift_Del	G	-	p.P89fs
LUAD	TCGA-86-A4JF-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562741	14562741	Frame_Shift_Del	C	-	p.R357fs
LUAD	TCGA-86-A4JF-01	PLEKHG2	ENST00000458508.2	chr19	39914067:39914293:39914372:39915522:39915877:39915934,	39914373	39915522	39914977	39914977	Frame_Shift_Del	C	-	p.D1039fs
LUAD	TCGA-86-A4JF-01	HNRNPUL1	ENST00000595806.1,ENST00000378215.4,ENST00000352456.3	chr19	41810147:41810166:41811550:41811772:41812353:41812830,	41811551	41811772	41811722	41811722	Frame_Shift_Del	C	-	p.P803fs
LUAD	TCGA-86-A4JF-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000595018.1,ENST00000263367.3,ENST00000593587.1	chr19	41810147:41810166:41811580:41811772:41812353:41812830,	41811581	41811772	41811722	41811722	Frame_Shift_Del	C	-	p.P803fs
LUAD	TCGA-86-A4JF-01	SIGLEC6	ENST00000343300.4,ENST00000391797.3	chr19	52023252:52023509:52032977:52033235:52033690:52033738,	52032978	52033235	52033148	52033148	Frame_Shift_Del	G	-	p.P265fs
LUAD	TCGA-86-A4JF-01	PIGT	ENST00000543458.2	chr20	44047491:44047619:44047934:44048035:44048143:44048230,44044822:44044983:44047934:44048035:44048143:44048230,44045156:44045294:44047934:44048035:44048143:44048230,	44047935	44048035	44048000	44048001	Frame_Shift_Ins	-	C	p.P187fs
LUAD	TCGA-86-A4JF-01	IGLL1	ENST00000330377.2	chr22	23915555:23915772:23917153:23917269:23922171:23922426,	23917154	23917269	23917236	23917236	Frame_Shift_Del	G	-	p.P80fs
LUAD	TCGA-86-A4JF-01	IGLL1	ENST00000438703.1	chr22	23915555:23915772:23917153:23917272:23922171:23922426,	23917154	23917272	23917236	23917236	Frame_Shift_Del	G	-	p.P80fs
LUAD	TCGA-86-A4JF-01	BRD1	ENST00000404760.1,ENST00000404034.1,ENST00000457780.2,ENST00000216267.8	chr22	50192635:50192767:50197851:50198008:50216598:50216853,	50197852	50198008	50197901	50197902	Frame_Shift_Ins	-	G	p.A492fs
LUAD	TCGA-86-A4JF-01	TRO	ENST00000445561.1	chrX	54955035:54955143:54957173:54957464:54957636:54957862,	54957174	54957464	54957424	54957425	Frame_Shift_Ins	-	T	p.W1423fs
LUAD	TCGA-91-6828-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210560407	210560408	Frame_Shift_Ins	-	T	p.N1172fs
LUAD	TCGA-91-6828-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210560407	210560408	Frame_Shift_Ins	-	T	p.N1172fs
LUAD	TCGA-91-6828-01	TGFBI	ENST00000507018.1,ENST00000506699.1,ENST00000305126.8,ENST00000442011.2	chr5	135369451:135369550:135379746:135379811:135382023:135382129,	135379747	135379811	135379758	135379758	Frame_Shift_Del	A	-	p.Y82fs
LUAD	TCGA-91-6828-01	POSTN	ENST00000379749.4,ENST00000379747.4	chr13	38145505:38145595:38148708:38148789:38151889:38151934,	38148709	38148789	38148759	38148759	Frame_Shift_Del	G	-	p.P680fs
LUAD	TCGA-91-6829-01	DOCK7	ENST00000404627.2,ENST00000340370.5	chr1	63119654:63119830:63128695:63128801:63153897:63153953,	63128696	63128801	63128718	63128719	Frame_Shift_Ins	-	A	p.Q41fs
LUAD	TCGA-91-6829-01	GOLPH3L	ENST00000427665.1	chr1	150634289:150634404:150636107:150636239:150667131:150667326,150634289:150634404:150636107:150636239:150666583:150666649,	150636108	150636239	150636173	150636173	Frame_Shift_Del	C	-	p.A84fs
LUAD	TCGA-91-6829-01	TECPR1	ENST00000379795.3,ENST00000447648.2,ENST00000479975.1,ENST00000476659.1,ENST00000490842.1	chr7	97852973:97853030:97854112:97854192:97854317:97854414,	97854113	97854192	97854161	97854161	Frame_Shift_Del	G	-	p.P881fs
LUAD	TCGA-91-6829-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111238	105111239	Frame_Shift_Ins	-	A	p.C432fs
LUAD	TCGA-91-6829-01	PUS7	ENST00000481939.1	chr7	105108783:105108910:105111207:105111295:105112578:105112635,	105111208	105111295	105111238	105111239	Frame_Shift_Ins	-	A	p.C432fs
LUAD	TCGA-91-6829-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579471	7579471	Frame_Shift_Del	G	-	p.P72fs
LUAD	TCGA-91-6831-01	SIMC1	ENST00000429602.2	chr5	175665509:175665640:175716656:175717958:175722032:175722080,	175716657	175717958	175717845	175717845	Frame_Shift_Del	C	-	p.P421fs
LUAD	TCGA-91-6836-01	NRM	ENST00000482141.1	chr6	30655828:30656719:30657052:30657229:30657823:30658020,30655828:30656719:30657052:30657229:30657801:30658020,30655828:30656719:30657052:30657229:30658618:30658744,	30657053	30657229	30657172	30657172	Frame_Shift_Del	C	-	p.A130fs
LUAD	TCGA-91-6836-01	DDB1	ENST00000535147.1,ENST00000540166.1,ENST00000537877.1,ENST00000301764.7	chr11	61081009:61081178:61081333:61081441:61081518:61081674,	61081334	61081441	61081431	61081431	Frame_Shift_Del	A	-	p.P588fs
LUAD	TCGA-91-6847-01	LPP	ENST00000414139.1,ENST00000312675.4	chr3	188059450:188059507:188123899:188124101:188202379:188202383,187943192:187943315:188123899:188124101:188202379:188202383,	188123900	188124101	188124020	188124024	Frame_Shift_Del	ACACA	-	p.TQ38fs
LUAD	TCGA-91-6847-01	COQ4	ENST00000300452.3	chr9	131088057:131088160:131094431:131094561:131095128:131095222,	131094432	131094561	131094439	131094439	Frame_Shift_Del	C	-	p.S137fs
LUAD	TCGA-91-6848-01	HEATR5B	ENST00000233099.5,ENST00000354531.2	chr2	37246951:37247020:37247797:37247979:37255065:37255317,	37247798	37247979	37247938	37247938	Frame_Shift_Del	C	-	p.A1299fs
LUAD	TCGA-91-6848-01	SH3RF3	ENST00000309415.6,ENST00000418513.1	chr2	109964129:109964405:109988041:109988137:110015045:110015399,	109988042	109988137	109988056	109988056	Frame_Shift_Del	G	-	p.T288fs
LUAD	TCGA-91-6849-01	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081695	144081696	Frame_Shift_Ins	-	A	p.IK193fs
LUAD	TCGA-91-6849-01	TBC1D2	ENST00000375064.1,ENST00000342112.5,ENST00000375066.5,ENST00000375063.1	chr9	100963760:100963946:100965569:100965690:100970949:100971426,	100965570	100965690	100965613	100965614	Frame_Shift_Del	AT	-	p.I743fs
LUAD	TCGA-91-8499-01	CD84	ENST00000368051.3,ENST00000360056.3,ENST00000368054.3,ENST00000368048.3,ENST00000311224.4,ENST00000368047.3	chr1	160523684:160523936:160535193:160535535:160549181:160549263,	160535194	160535535	160535420	160535420	Frame_Shift_Del	C	-	p.W54fs
LUAD	TCGA-91-8499-01	NRM	ENST00000462857.1	chr6	30657052:30657229:30657801:30658020:30658618:30658744,30655828:30656719:30657801:30658020:30658618:30658744,	30657802	30658020	30657966	30657967	Frame_Shift_Ins	-	G	p.G63fs
LUAD	TCGA-91-8499-01	NRM	ENST00000376420.5	chr6	30657052:30657229:30657823:30658020:30658618:30658744,30655828:30656719:30657823:30658020:30658618:30658744,	30657824	30658020	30657966	30657967	Frame_Shift_Ins	-	G	p.G63fs
LUAD	TCGA-91-8499-01	TBATA	ENST00000299290.1	chr10	72533979:72534113:72536908:72537091:72538312:72538392,72534944:72535026:72536908:72537091:72538312:72538392,	72536909	72537091	72537055	72537055	Frame_Shift_Del	C	-	p.A182fs
LUAD	TCGA-91-8499-01	MUC5B	ENST00000529681.1,ENST00000447027.1,ENST00000526859.1	chr11	1278855:1278940:1279328:1279433:1279559:1279597,	1279329	1279433	1279349	1279350	Frame_Shift_Ins	-	A	p.P5494fs
LUAD	TCGA-91-8499-01	ANKRD13D	ENST00000506531.1	chr11	67059608:67059651:67066528:67067082:67067297:67067359,	67066529	67067082	67066550	67066550	Frame_Shift_Del	C	-	p.G164fs
LUAD	TCGA-91-8499-01	ANKRD13D	ENST00000511455.2,ENST00000308440.6,ENST00000514166.1,ENST00000504186.1,ENST00000447274.2	chr11	67059608:67059651:67066528:67066595:67067000:67067082,	67066529	67066595	67066550	67066550	Frame_Shift_Del	C	-	p.G164fs
LUAD	TCGA-91-8499-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470569	44470579	Frame_Shift_Del	TCAAGGACATC	-	p.DVLD155fs
LUAD	TCGA-91-A4BC-01	SCN3A	ENST00000440431.2,ENST00000283254.7	chr2	166019065:166019338:166020127:166020219:166020901:166021030,	166020128	166020219	166020174	166020175	Frame_Shift_Del	TC	-	p.R216fs
LUAD	TCGA-91-A4BC-01	SCRN1	ENST00000409570.1	chr7	29994794:29994976:30008524:30008684:30029558:30029688,29994794:29994976:30008524:30008684:30029257:30029328,	30008525	30008684	30008609	30008609	Frame_Shift_Del	C	-	p.G25fs
LUAD	TCGA-91-A4BC-01	SCRN1	ENST00000494620.1	chr7	29994794:29994976:30008524:30008629:30029558:30029688,	30008525	30008629	30008609	30008609	Frame_Shift_Del	C	-	p.G25fs
LUAD	TCGA-91-A4BC-01	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1	chrX	41205757:41205875:41206111:41206265:41206564:41206704,	41206112	41206265	41206239	41206239	Frame_Shift_Del	G	-	p.K581fs
LUAD	TCGA-91-A4BC-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130408572:130408851:130408972:130409260:130409451:130409739,	130408973	130409260	130409250	130409250	Frame_Shift_Del	G	-	p.P1056fs
LUAD	TCGA-91-A4BD-01	DLGAP4	ENST00000373913.3,ENST00000373907.2,ENST00000401952.2	chr20	34995551:34995678:35060048:35061119:35064511:35064753,	35060049	35061119	35060511	35060512	Frame_Shift_Ins	-	T	p.P131fs
LUAD	TCGA-93-7347-01	DHX32	ENST00000284690.3	chr10	127542529:127542772:127548171:127548544:127555558:127555752,	127548172	127548544	127548457	127548461	Frame_Shift_Del	ATGAA	-	p.IH187fs
LUAD	TCGA-93-7347-01	HSF4	ENST00000521314.1,ENST00000264009.8,ENST00000521374.1	chr16	67201415:67201502:67201622:67201850:67202733:67202786,	67201623	67201850	67201666	67201666	Frame_Shift_Del	G	-	p.G301fs
LUAD	TCGA-93-A4JN-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71725333	71725339	Frame_Shift_Del	CAGACCA	-	p.RGL1070fs
LUAD	TCGA-95-7039-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451048	155451048	Frame_Shift_Del	G	-	p.S538fs
LUAD	TCGA-95-7039-01	TNR	ENST00000367674.2,ENST00000263525.2	chr1	175348687:175348873:175355167:175355437:175360423:175360574,	175355168	175355437	175355240	175355240	Frame_Shift_Del	G	-	p.R569fs
LUAD	TCGA-95-7039-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102600	168102600	Frame_Shift_Del	G	-	p.Q1566fs
LUAD	TCGA-95-7039-01	ROPN1L	ENST00000510520.1	chr5	10450063:10450225:10461295:10461471:10471921:10472141,	10461296	10461471	10461430	10461431	Frame_Shift_Ins	-	T	p.G185fs
LUAD	TCGA-95-7039-01	CCDC126	ENST00000409765.1	chr7	23637585:23637670:23650789:23651172:23682549:23682555,23637133:23637224:23650789:23651172:23682549:23682555,	23650790	23651172	23651005	23651005	Frame_Shift_Del	T	-	p.I24fs
LUAD	TCGA-95-7039-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968043	5968044	Frame_Shift_Ins	-	T	p.NK729fs
LUAD	TCGA-95-7039-01	METTL15	ENST00000407364.3,ENST00000451385.2	chr11	28311752:28311944:28318299:28318478:28351942:28352176,	28318300	28318478	28318438	28318438	Frame_Shift_Del	C	-	p.Y246fs
LUAD	TCGA-95-7039-01	METTL15	ENST00000406787.3	chr11	28311752:28311944:28318343:28318478:28351942:28352176,	28318344	28318478	28318438	28318438	Frame_Shift_Del	C	-	p.Y246fs
LUAD	TCGA-95-7039-01	FOSL1	ENST00000312562.2	chr11	65661484:65661587:65664279:65664477:65667711:65667890,65660474:65660767:65664279:65664477:65667711:65667890,65661484:65661592:65664279:65664477:65667711:65667890,	65664280	65664477	65664461	65664461	Frame_Shift_Del	G	-	p.P39fs
LUAD	TCGA-95-7039-01	EVL	ENST00000544450.2	chr14	100531781:100531848:100551023:100551192:100563817:100563995,100485912:100486024:100551023:100551192:100563817:100563995,	100551024	100551192	100551124	100551125	Frame_Shift_Del	AT	-	p.I42fs
LUAD	TCGA-95-7039-01	HYDIN	ENST00000393567.2	chr16	70975538:70975722:70977714:70977852:70986323:70986538,	70977715	70977852	70977826	70977826	Frame_Shift_Del	C	-	p.G2186fs
LUAD	TCGA-95-7039-01	CEP76	ENST00000592660.1,ENST00000585751.1,ENST00000262127.2,ENST00000593250.1,ENST00000590143.1	chr18	12695252:12695350:12697221:12697407:12698977:12699122,	12697222	12697407	12697226	12697227	Frame_Shift_Ins	-	C	p.G234fs
LUAD	TCGA-95-7039-01	ZNF236	ENST00000579322.1,ENST00000253159.8,ENST00000320610.9,ENST00000543926.2	chr18	74580640:74580819:74583656:74583781:74587447:74587472,	74583657	74583781	74583718	74583718	Frame_Shift_Del	C	-	p.P200fs
LUAD	TCGA-95-7039-01	SHANK1	ENST00000293441.1,ENST00000391814.1,ENST00000391813.1,ENST00000359082.3	chr19	51169448:51172542:51175274:51175371:51189493:51189612,	51175275	51175371	51175344	51175344	Frame_Shift_Del	G	-	p.Q869fs
LUAD	TCGA-95-7039-01	EPB41L1	ENST00000373950.2,ENST00000202028.5,ENST00000441639.1,ENST00000373941.1,ENST00000338074.2,ENST00000373946.3,ENST00000432603.1	chr20	34807682:34807766:34809785:34809866:34810199:34810316,	34809786	34809866	34809839	34809840	Frame_Shift_Ins	-	G	p.TG831fs
LUAD	TCGA-95-7043-01	TGFBR3	ENST00000525962.1,ENST00000532540.1,ENST00000465892.2,ENST00000370399.2,ENST00000212355.4	chr1	92177799:92178099:92181792:92181951:92182124:92182265,	92181793	92181951	92181945	92181945	Frame_Shift_Del	A	-	p.C572fs
LUAD	TCGA-95-7043-01	NEIL3	ENST00000264596.3	chr4	178260936:178261011:178262629:178262796:178272533:178272703,	178262630	178262796	178262723	178262723	Frame_Shift_Del	T	-	p.F266fs
LUAD	TCGA-95-7043-01	STIM1	ENST00000532610.1,ENST00000527651.1,ENST00000532919.1,ENST00000532990.1,ENST00000530554.1,ENST00000525403.1,ENST00000528656.1,ENST00000525055.1,ENST00000300737.4	chr11	3988781:3988912:4045102:4045217:4076755:4076795,	4045103	4045217	4045158	4045159	Frame_Shift_Ins	-	T	p.R109fs
LUAD	TCGA-95-7043-01	NXPE1	ENST00000536312.1	chr11	114399517:114399554:114400896:114401630:114421824:114421923,	114400897	114401630	114401102	114401103	Frame_Shift_Ins	-	A	p.*210fs
LUAD	TCGA-95-7043-01	SOX5	ENST00000546136.1,ENST00000537393.1,ENST00000309359.1,ENST00000367206.3,ENST00000545921.1,ENST00000451604.2	chr12	23716254:23716337:23728594:23728772:23757320:23757467,	23728595	23728772	23728652	23728652	Frame_Shift_Del	G	-	p.L416fs
LUAD	TCGA-95-7043-01	DHRS12	ENST00000444610.2,ENST00000490949.1,ENST00000280056.2,ENST00000218981.1	chr13	52351195:52351257:52364146:52364228:52365300:52365393,	52364147	52364228	52364174	52364174	Frame_Shift_Del	C	-	p.E92fs
LUAD	TCGA-95-7043-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021366	42021366	Frame_Shift_Del	G	-	p.R1221fs
LUAD	TCGA-95-7043-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829861	72829862	Frame_Shift_Ins	-	C	p.E2240fs
LUAD	TCGA-95-7043-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158112	50158113	Frame_Shift_Ins	-	G	p.RG1201fs
LUAD	TCGA-95-7043-01	PABPC1L	ENST00000217073.2,ENST00000255136.3	chr20	43559161:43559367:43560982:43561073:43561712:43561826,	43560983	43561073	43561038	43561038	Frame_Shift_Del	C	-	p.A432fs
LUAD	TCGA-95-7043-01	TMLHE	ENST00000369439.4,ENST00000334398.3	chrX	154743646:154743926:154754116:154754293:154774756:154774938,	154754117	154754293	154754199	154754200	Frame_Shift_Ins	-	T	p.P92fs
LUAD	TCGA-95-7562-01	USP34	ENST00000398571.2	chr2	61622317:61622368:61632842:61633263:61647880:61647968,	61632843	61633263	61632973	61632974	Frame_Shift_Del	TT	-	p.K141fs
LUAD	TCGA-95-7562-01	CPVL	ENST00000409850.1,ENST00000396276.3,ENST00000265394.5	chr7	29103676:29103850:29105638:29105737:29111388:29111461,	29105639	29105737	29105649	29105650	Frame_Shift_Del	AA	-	p.L318fs
LUAD	TCGA-95-7562-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631927	116631927	Frame_Shift_Del	C	-	p.G133fs
LUAD	TCGA-95-7562-01	CREB3	ENST00000486056.1,ENST00000353704.2	chr9	35733211:35733279:35733392:35733482:35735105:35735212,	35733393	35733482	35733427	35733428	Frame_Shift_Del	AG	-	p.K127fs
LUAD	TCGA-95-7562-01	TBKBP1	ENST00000361722.3	chr17	45775960:45776141:45776685:45776861:45777001:45777063,	45776686	45776861	45776824	45776825	Frame_Shift_Ins	-	G	p.R258fs
LUAD	TCGA-95-7567-01	GTF3C2	ENST00000264720.3	chr2	27565857:27566014:27566174:27566445:27579605:27579634,	27566175	27566445	27566406	27566406	Frame_Shift_Del	C	-	p.V6fs
LUAD	TCGA-95-7567-01	SSB	ENST00000474273.1,ENST00000260956.4,ENST00000409333.1	chr2	170663480:170663581:170664991:170665063:170665369:170665412,	170664992	170665063	170665007	170665008	Frame_Shift_Ins	-	A	p.AK190fs
LUAD	TCGA-95-7567-01	DEPDC1B	ENST00000453022.2	chr5	59943224:59943360:59982788:59983054:59995872:59995961,	59982789	59983054	59982868	59982869	Frame_Shift_Ins	-	T	p.NP78fs
LUAD	TCGA-95-7567-01	KIAA0319	ENST00000543707.1	chr6	24596100:24596846:24601276:24601436:24645963:24646383,24596664:24596846:24601276:24601436:24645854:24646249,	24601277	24601436	24601319	24601320	Frame_Shift_Ins	-	G	p.R5fs
LUAD	TCGA-95-7567-01	NSMCE2	ENST00000517315.1,ENST00000517532.1,ENST00000522563.1,ENST00000287437.3	chr8	126163412:126163519:126194344:126194498:126369460:126369561,	126194345	126194498	126194363	126194364	Frame_Shift_Ins	-	A	p.K95fs
LUAD	TCGA-95-7567-01	CDC123	ENST00000281141.4,ENST00000498747.1,ENST00000378900.2	chr10	12288147:12288276:12291579:12291717:12292309:12292358,	12291580	12291717	12291634	12291635	Frame_Shift_Ins	-	A	p.F301fs
LUAD	TCGA-95-7567-01	CUTC	ENST00000370476.5,ENST00000493385.1,ENST00000471520.1,ENST00000370472.4	chr10	101496002:101496074:101499466:101499526:101502909:101503080,	101499467	101499526	101499503	101499504	Frame_Shift_Ins	-	G	p.G57fs
LUAD	TCGA-95-7567-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913973	129913974	Frame_Shift_Ins	-	T	p.R233fs
LUAD	TCGA-95-7567-01	AMPD3	ENST00000529834.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000444303.2	chr11	10503609:10503772:10506366:10506586:10508781:10508911,	10506367	10506586	10506451	10506452	Frame_Shift_Ins	-	G	p.R66fs
LUAD	TCGA-95-7567-01	C2CD3	ENST00000313663.7,ENST00000415191.2,ENST00000334126.7	chr11	73825428:73825638:73829272:73829427:73834032:73834180,	73829273	73829427	73829363	73829364	Frame_Shift_Ins	-	T	p.K477fs
LUAD	TCGA-95-7567-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874010	104874011	Frame_Shift_Ins	-	T	p.T191fs
LUAD	TCGA-95-7567-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761192	93761193	Frame_Shift_Ins	-	T	p.K58fs
LUAD	TCGA-95-7567-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000581711.1,ENST00000577880.1	chr18	2707804:2707918:2718155:2718233:2718312:2718432,	2718156	2718233	2718223	2718224	Frame_Shift_Ins	-	A	p.LK776fs
LUAD	TCGA-95-7567-01	PPP1R16B	ENST00000299824.1	chr20	37531310:37531435:37534611:37534737:37535621:37535697,	37534612	37534737	37534665	37534665	Frame_Shift_Del	C	-	p.D250fs
LUAD	TCGA-95-7567-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50051702	50051703	Frame_Shift_Ins	-	A	p.*178fs
LUAD	TCGA-95-7944-01	SPEG	ENST00000396698.1,ENST00000312358.7,ENST00000464989.1,ENST00000498378.1	chr2	220309766:220309883:220312695:220313993:220315857:220316001,	220312696	220313993	220313717	220313717	Frame_Shift_Del	C	-	p.P614fs
LUAD	TCGA-95-7944-01	XRN2	ENST00000539513.1,ENST00000377191.3,ENST00000430571.2	chr20	21346210:21346342:21349100:21349228:21362631:21362695,	21349101	21349228	21349164	21349164	Frame_Shift_Del	T	-	p.T840fs
LUAD	TCGA-95-7944-01	NRK	ENST00000243300.9,ENST00000428173.2,ENST00000536164.1	chrX	105124191:105124248:105125700:105125772:105132286:105132412,	105125701	105125772	105125740	105125740	Frame_Shift_Del	A	-	p.K74fs
LUAD	TCGA-95-7947-01	CCNJL	ENST00000541762.1,ENST00000257536.7,ENST00000519673.1	chr5	159682555:159682715:159686475:159686778:159707531:159707745,	159686476	159686778	159686536	159686536	Frame_Shift_Del	G	-	p.R223fs
LUAD	TCGA-95-7947-01	CUEDC2	ENST00000369937.4,ENST00000477994.1	chr10	104184405:104184549:104184871:104184955:104192282:104192325,	104184872	104184955	104184914	104184915	Frame_Shift_Ins	-	G	p.P11fs
LUAD	TCGA-95-7948-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437500	52437500	Frame_Shift_Del	C	-	p.G554fs
LUAD	TCGA-95-7948-01	IFI35	ENST00000438323.2,ENST00000246911.2	chr17	41158824:41158985:41164195:41164294:41165063:41165211,	41164196	41164294	41164281	41164281	Frame_Shift_Del	C	-	p.S36fs
LUAD	TCGA-95-8494-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000355730.3	chr7	47319883:47319952:47323294:47323463:47331552:47331630,	47323295	47323463	47323419	47323432	Frame_Shift_Del	TGAGGGACTCCATC	-	p.EMESLT1320fs
LUAD	TCGA-95-A4VK-01	AMY2B	ENST00000477657.1,ENST00000361355.4,ENST00000491397.1	chr1	104116329:104116560:104116881:104117015:104117844:104117967,	104116882	104117015	104116960	104116960	Frame_Shift_Del	G	-	p.A275fs
LUAD	TCGA-95-A4VK-01	ITGA5	ENST00000293379.4	chr12	54793428:54793542:54793647:54793731:54794629:54794779,	54793648	54793731	54793692	54793692	Frame_Shift_Del	C	-	p.E895fs
LUAD	TCGA-95-A4VN-01	VWA3B	ENST00000416277.1,ENST00000433678.1,ENST00000409460.1,ENST00000477737.1,ENST00000432242.1,ENST00000435344.1,ENST00000422503.2,ENST00000451075.2	chr2	98737761:98737921:98744701:98744871:98750286:98750360,	98744702	98744871	98744728	98744728	Frame_Shift_Del	G	-	p.V243fs
LUAD	TCGA-95-A4VN-01	VAV2	ENST00000371851.1,ENST00000486113.1,ENST00000371850.3	chr9	136726495:136726554:136804224:136804341:136857196:136857381,	136804225	136804341	136804229	136804229	Frame_Shift_Del	C	-	p.G106fs
LUAD	TCGA-95-A4VN-01	MS4A8	ENST00000529752.1	chr11	60474460:60474520:60476122:60476201:60482493:60482607,	60476123	60476201	60476137	60476137	Frame_Shift_Del	G	-	p.L139fs
LUAD	TCGA-95-A4VN-01	MS4A8	ENST00000300226.2	chr11	60474460:60474520:60476122:60476254:60482493:60482607,	60476123	60476254	60476137	60476137	Frame_Shift_Del	G	-	p.L139fs
LUAD	TCGA-95-A4VN-01	PIGT	ENST00000543458.2	chr20	44044822:44044983:44045156:44045294:44047934:44048035,	44045157	44045294	44045213	44045214	Frame_Shift_Ins	-	T	p.T82fs
LUAD	TCGA-95-A4VN-01	PIGT	ENST00000535404.1,ENST00000372689.5	chr20	44044822:44044983:44045156:44045334:44047934:44048035,44044822:44044983:44045156:44045334:44047491:44047619,	44045157	44045334	44045213	44045214	Frame_Shift_Ins	-	T	p.T82fs
LUAD	TCGA-95-A4VP-01	PAOX	ENST00000368539.4,ENST00000368535.2,ENST00000278060.5,ENST00000483211.2,ENST00000356306.5,ENST00000476834.2	chr10	135202459:135202572:135203093:135203251:135204815:135205128,	135203094	135203251	135203109	135203110	Frame_Shift_Ins	-	CA	p.R417fs
LUAD	TCGA-97-7546-01	APOBEC3D	ENST00000381568.4,ENST00000216099.8	chr22	39418826:39419019:39421074:39421354:39421561:39421676,	39421075	39421354	39421324	39421324	Frame_Shift_Del	G	-	p.G154fs
LUAD	TCGA-97-7547-01	DAP3	ENST00000466384.1,ENST00000343043.3,ENST00000368336.5,ENST00000497826.1,ENST00000421487.2,ENST00000471214.1,ENST00000462978.1,ENST00000471642.2,ENST00000535183.1	chr1	155697398:155697529:155698832:155698913:155698998:155699157,	155698833	155698913	155698856	155698856	Frame_Shift_Del	C	-	p.V209fs
LUAD	TCGA-97-7547-01	NEB	ENST00000603639.1,ENST00000489048.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000409198.1,ENST00000172853.10	chr2	152551035:152551143:152552091:152552196:152553150:152553249,	152552092	152552196	152552143	152552143	Frame_Shift_Del	A	-	p.P541fs
LUAD	TCGA-97-7547-01	SPPL2A	ENST00000558934.1,ENST00000261854.5	chr15	51012136:51012297:51014320:51014398:51017417:51017520,	51014321	51014398	51014345	51014346	Frame_Shift_Del	TG	-	p.YI434fs
LUAD	TCGA-97-7553-01	MBNL1	ENST00000485910.1,ENST00000465907.2,ENST00000282488.7,ENST00000545754.1	chr3	152017986:152018156:152132729:152132900:152150505:152150706,151986751:151986881:152132729:152132900:152150505:152150706,152017986:152018156:152132729:152132900:152163070:152163263,	152132730	152132900	152132832	152132832	Frame_Shift_Del	A	-	p.M93fs
LUAD	TCGA-97-7553-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000584328.1,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29665042:29665157:29665721:29665823:29667522:29667663,	29665722	29665823	29665755	29665756	Frame_Shift_Ins	-	A	p.Q2285fs
LUAD	TCGA-97-7554-01	CTNNA2	ENST00000496558.1	chr2	79740159:79740333:79878677:79878784:79971512:79971609,	79878678	79878784	79878782	79878783	Frame_Shift_Ins	-	A	p.G34fs
LUAD	TCGA-97-7554-01	HECW1	ENST00000395891.2	chr7	43152243:43152536:43283473:43283531:43351361:43351583,43153755:43153990:43283473:43283531:43351361:43351583,	43283474	43283531	43283514	43283514	Frame_Shift_Del	C	-	p.H4fs
LUAD	TCGA-97-7554-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1,ENST00000599719.1	chr19	41787067:41787180:41798149:41798416:41800242:41800293,	41798150	41798416	41798236	41798237	Frame_Shift_Ins	-	T	p.G363fs
LUAD	TCGA-97-7937-01	ANKRD45	ENST00000333279.2	chr1	173596203:173596298:173615984:173616152:173628229:173628572,	173615985	173616152	173616018	173616019	Frame_Shift_Del	GA	-	p.SQ154fs
LUAD	TCGA-97-7937-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89408219:89408330:89410316:89410487:89414162:89414306,	89410317	89410487	89410360	89410363	Frame_Shift_Del	AAGA	-	p.EE669fs
LUAD	TCGA-97-7937-01	DNMT1	ENST00000592705.1,ENST00000340748.4,ENST00000540357.1,ENST00000359526.4	chr19	10252755:10252896:10254441:10254663:10257026:10257200,	10254442	10254663	10254626	10254626	Frame_Shift_Del	C	-	p.E962fs
LUAD	TCGA-97-7937-01	LGALS4	ENST00000595278.1,ENST00000597153.1,ENST00000307751.4	chr19	39297100:39297235:39299383:39299588:39303070:39303095,	39299384	39299588	39299514	39299514	Frame_Shift_Del	C	-	p.G70fs
LUAD	TCGA-97-7937-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699067	30699067	Frame_Shift_Del	C	-	p.P308fs
LUAD	TCGA-97-7938-01	C7orf57	ENST00000430738.1,ENST00000461741.1	chr7	48075126:48075227:48075889:48075960:48080930:48081104,	48075890	48075960	48075920	48075921	Frame_Shift_Ins	-	A	p.G6fs
LUAD	TCGA-97-7938-01	C7orf57	ENST00000348904.3,ENST00000539619.1	chr7	48075126:48075227:48075804:48075960:48080930:48081104,	48075805	48075960	48075920	48075921	Frame_Shift_Ins	-	A	p.G6fs
LUAD	TCGA-97-7938-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479332	100479332	Frame_Shift_Del	G	-	p.G106fs
LUAD	TCGA-97-7938-01	ST3GAL4	ENST00000531217.1	chr11	126277468:126277529:126277993:126278089:126278201:126278391,126277146:126277244:126277993:126278089:126278201:126278391,	126277994	126278089	126278003	126278003	Frame_Shift_Del	C	-	p.C117fs
LUAD	TCGA-97-7938-01	CNKSR2	ENST00000379510.3,ENST00000279451.4,ENST00000425654.2	chrX	21519637:21519706:21534602:21534749:21544984:21545118,	21534603	21534749	21534647	21534647	Frame_Shift_Del	C	-	p.D285fs
LUAD	TCGA-97-7941-01	LONP2	ENST00000285737.4,ENST00000566755.1,ENST00000535754.1,ENST00000565867.2	chr16	48381417:48381625:48382010:48382201:48385491:48385596,	48382011	48382201	48382016	48382016	Frame_Shift_Del	G	-	p.G718fs
LUAD	TCGA-97-8172-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114069779	114069779	Frame_Shift_Del	G	-	p.S309fs
LUAD	TCGA-97-8172-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34667985:34668231:34670565:34670628:34673088:34673153,	34670566	34670628	34670626	34670627	Frame_Shift_Ins	-	TG	p.R135fs
LUAD	TCGA-97-8174-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4,ENST00000432282.1,ENST00000453771.1	chr1	203772084:203772144:203786053:203786252:203787697:203787793,	203786054	203786252	203786224	203786225	Frame_Shift_Ins	-	T	p.F9fs
LUAD	TCGA-97-8174-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000458360.2,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45910845:45910961:45912314:45912392:45915972:45916028,	45912315	45912392	45912347	45912347	Frame_Shift_Del	G	-	p.Q264fs
LUAD	TCGA-97-8176-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1271930	1271930	Frame_Shift_Del	C	-	p.S4611fs
LUAD	TCGA-97-8177-01	RPL5	ENST00000370321.3,ENST00000315741.5	chr1	93300335:93300470:93301746:93301949:93303012:93303026,	93301747	93301949	93301834	93301837	Frame_Shift_Del	CAGC	-	p.QP138fs
LUAD	TCGA-97-8177-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
LUAD	TCGA-97-8177-01	RNF20	ENST00000389120.3	chr9	104312887:104313067:104313965:104314101:104314422:104314544,	104313966	104314101	104314008	104314009	Frame_Shift_Ins	-	T	p.S439fs
LUAD	TCGA-97-8179-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214774	108214774	Frame_Shift_Del	T	-	p.K530fs
LUAD	TCGA-97-8179-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24905688:24905856:24910350:24910464:24911360:24911414,	24910351	24910464	24910371	24910371	Frame_Shift_Del	C	-	p.E121fs
LUAD	TCGA-97-8179-01	WDR90	ENST00000550902.1,ENST00000549091.1,ENST00000552728.1,ENST00000549024.1,ENST00000547407.1,ENST00000546923.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1	chr16	711731:711787:711890:712059:712219:712224,	711891	712059	712009	712019	Frame_Shift_Del	CGCGTGCCGGC	-	p.TRAG1328fs
LUAD	TCGA-97-8179-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19955586	19955587	Frame_Shift_Ins	-	A	p.S355fs
LUAD	TCGA-97-8552-01	WNK1	ENST00000315939.6,ENST00000340908.4,ENST00000530271.2,ENST00000535698.1	chr12	987437:987527:988738:989197:989886:989980,	988739	989197	989062	989063	Frame_Shift_Del	TC	-	p.LL899fs
LUAD	TCGA-97-A4M0-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574030	7574030	Frame_Shift_Del	G	-	p.R333fs
LUAD	TCGA-97-A4M0-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61834884	61834884	Frame_Shift_Del	C	-	p.G136fs
LUAD	TCGA-97-A4M0-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784317	54784317	Frame_Shift_Del	G	-	p.P730fs
LUAD	TCGA-97-A4M3-01	MTOR	ENST00000361445.4	chr1	11316048:11316249:11316989:11317222:11318541:11318650,	11316990	11317222	11317216	11317217	Frame_Shift_Ins	-	G	p.H93fs
LUAD	TCGA-97-A4M7-01	AEBP1	ENST00000455443.1	chr7	44144392:44144517:44146144:44146486:44147037:44147109,	44146145	44146486	44146399	44146399	Frame_Shift_Del	C	-	p.P171fs
LUAD	TCGA-97-A4M7-01	IL9R	ENST00000540897.1,ENST00000244174.5,ENST00000424344.3,ENST00000369423.2	chrX	155234113:155234230:155234942:155235144:155235747:155235853,	155234943	155235144	155235049	155235049	Frame_Shift_Del	C	-	p.A208fs
LUAD	TCGA-99-7458-01	FUBP3	ENST00000319725.9,ENST00000465949.1	chr9	133470869:133470975:133485340:133485374:133487842:133487892,	133485341	133485374	133485348	133485348	Frame_Shift_Del	C	-	p.N66fs
LUAD	TCGA-99-7458-01	PFKL	ENST00000466134.1,ENST00000397961.2,ENST00000349048.4,ENST00000403390.1,ENST00000491298.1,ENST00000496824.1	chr21	45726563:45726637:45730888:45730966:45731987:45732120,	45730889	45730966	45730904	45730904	Frame_Shift_Del	G	-	p.V106fs
LUAD	TCGA-99-8025-01	OTUD3	ENST00000466697.1,ENST00000375120.3	chr1	20216950:20217026:20220860:20220973:20224032:20224155,	20220861	20220973	20220953	20220953	Frame_Shift_Del	C	-	p.L155fs
LUAD	TCGA-99-8025-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41192082	41192083	Frame_Shift_Ins	-	G	p.G356fs
LUAD	TCGA-99-8025-01	TTLL6	ENST00000490027.1,ENST00000433608.2,ENST00000393382.3	chr17	46846350:46846616:46847089:46847459:46862284:46862563,	46847090	46847459	46847384	46847384	Frame_Shift_Del	C	-	p.A706fs
LUAD	TCGA-99-8032-01	UCHL5	ENST00000367455.4,ENST00000421683.1,ENST00000367452.4,ENST00000367449.1,ENST00000367448.1,ENST00000367450.3,ENST00000367451.4,ENST00000367454.1	chr1	192998517:192998579:192998661:192998787:193018875:193018981,	192998662	192998787	192998709	192998709	Frame_Shift_Del	C	-	p.E109fs
LUAD	TCGA-99-8032-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131630	231131631	Frame_Shift_Ins	-	T	p.A192fs
LUAD	TCGA-99-8032-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
LUAD	TCGA-99-8032-01	KLHL32	ENST00000369261.4	chr6	97489367:97489475:97512503:97512602:97533001:97533217,	97512504	97512602	97512538	97512538	Frame_Shift_Del	T	-	p.L116fs
LUAD	TCGA-99-8033-01	PCSK5	ENST00000424854.2,ENST00000545128.1,ENST00000376767.3,ENST00000376752.4	chr9	78722166:78722267:78749024:78749128:78771960:78772078,	78749025	78749128	78749062	78749062	Frame_Shift_Del	G	-	p.V416fs
LUAD	TCGA-J2-8192-01	SNAP91	ENST00000439399.2,ENST00000518312.1,ENST00000369694.2,ENST00000521616.1,ENST00000428679.2,ENST00000521485.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1	chr6	84303354:84303460:84304092:84304200:84310989:84311157,	84304093	84304200	84304170	84304170	Frame_Shift_Del	G	-	p.P452fs
LUAD	TCGA-J2-8192-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57113686	57113687	Frame_Shift_Del	GG	-	p.P543fs
LUAD	TCGA-J2-8192-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57113686	57113687	Frame_Shift_Del	GG	-	p.P543fs
LUAD	TCGA-J2-8192-01	NACA	ENST00000550952.1	chr12	57113320:57113380:57113509:57115243:57118235:57118305,	57113510	57115243	57113816	57113819	Frame_Shift_Del	TGGT	-	p.TT499fs
LUAD	TCGA-J2-8192-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57113816	57113819	Frame_Shift_Del	TGGT	-	p.TT499fs
LUAD	TCGA-J2-8194-01	CYP2W1	ENST00000308919.7,ENST00000415893.1,ENST00000340150.6	chr7	1026742:1026881:1026982:1027167:1027912:1028054,	1026983	1027167	1027165	1027165	Frame_Shift_Del	A	-	p.K325fs
LUAD	TCGA-J2-8194-01	ICA1	ENST00000407906.1,ENST00000402384.3,ENST00000455539.1,ENST00000422063.2,ENST00000317367.5,ENST00000396675.3,ENST00000406470.2,ENST00000401396.1,ENST00000265577.7	chr7	8196745:8196844:8198156:8198282:8257934:8258089,	8198157	8198282	8198251	8198251	Frame_Shift_Del	T	-	p.N204fs
LUAD	TCGA-J2-8194-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10599867:10600044:10602252:10602396,10597393:10597494:10599867:10600044:10600323:10600529,	10599868	10600044	10599954	10599958	Frame_Shift_Del	GTTTC	-	p.ET542fs
LUAD	TCGA-J2-A4AD-01	PRKCD	ENST00000394729.2,ENST00000330452.3	chr3	53222735:53222874:53223073:53223262:53223888:53224017,	53223074	53223262	53223163	53223163	Frame_Shift_Del	C	-	p.F548fs
LUAD	TCGA-J2-A4AD-01	LUM	ENST00000546642.1	chr12	91497936:91498096:91501894:91502464:91505174:91505216,	91501895	91502464	91502271	91502271	Frame_Shift_Del	G	-	p.T162fs
LUAD	TCGA-J2-A4AD-01	TECPR2	ENST00000558678.1,ENST00000359520.7	chr14	102909983:102910164:102912142:102912284:102915965:102916206,	102912143	102912284	102912215	102912216	Frame_Shift_Ins	-	G	p.E1003fs
LUAD	TCGA-L4-A4E5-01	ATP7A	ENST00000341514.6,ENST00000350425.4,ENST00000343533.5	chrX	77286897:77287080:77289102:77289319:77294333:77294480,	77289103	77289319	77289215	77289216	Frame_Shift_Del	AT	-	p.N1136fs
LUAD	TCGA-L9-A443-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167849012:167849102:167850537:167851073:167855037:167855146,	167850538	167851073	167851021	167851021	Frame_Shift_Del	G	-	p.Q586fs
LUAD	TCGA-L9-A443-01	RSPH10B2	ENST00000297186.3,ENST00000403107.1,ENST00000404077.1,ENST00000433859.2	chr7	6819240:6819355:6820439:6820519:6820958:6821107,	6820440	6820519	6820456	6820457	Frame_Shift_Del	CT	-	p.L516fs
LUAD	TCGA-L9-A443-01	PAPSS2	ENST00000361175.4,ENST00000427144.2,ENST00000456849.1	chr10	89503129:89503398:89504758:89504988:89505588:89505790,	89504759	89504988	89504897	89504898	Frame_Shift_Ins	-	C	p.P539fs
LUAD	TCGA-L9-A443-01	MAP3K10	ENST00000597986.1,ENST00000253055.3	chr19	40704349:40704462:40710391:40710540:40711027:40711203,	40710392	40710540	40710420	40710421	Frame_Shift_Ins	-	C	p.G298fs
LUAD	TCGA-L9-A444-01	KIAA1958	ENST00000536272.1,ENST00000374244.3	chr9	115249357:115249398:115336336:115337531:115380150:115380234,	115336337	115337531	115337090	115337090	Frame_Shift_Del	C	-	p.P244fs
LUAD	TCGA-L9-A444-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31605091	31605092	Frame_Shift_Ins	-	T	p.G471fs
LUAD	TCGA-L9-A444-01	SOS2	ENST00000216373.5,ENST00000543680.1,ENST00000555794.1	chr14	50625282:50625364:50626148:50626804:50628199:50628327,	50626149	50626804	50626741	50626742	Frame_Shift_Ins	-	A	p.K420fs
LUAD	TCGA-L9-A444-01	TPGS2	ENST00000587129.1	chr18	34376888:34377013:34378411:34378572:34380160:34380225,34366535:34367042:34378411:34378572:34380160:34380225,34366535:34366945:34378411:34378572:34380160:34380225,34362947:34363094:34378411:34378572:34380160:34380225,	34378412	34378572	34378496	34378496	Frame_Shift_Del	G	-	p.A191fs
LUAD	TCGA-MN-A4N1-01	SFTPB	ENST00000428225.1	chr2	85889151:85889232:85890468:85890602:85890786:85890820,	85890469	85890602	85890580	85890581	Frame_Shift_Del	AG	-	p.S309fs
LUAD	TCGA-MN-A4N1-01	SFTPB	ENST00000519937.2,ENST00000409383.1,ENST00000393822.3,ENST00000342375.3	chr2	85889151:85889232:85890468:85890614:85890786:85890820,	85890469	85890614	85890580	85890581	Frame_Shift_Del	AG	-	p.S309fs
LUAD	TCGA-MN-A4N1-01	DNAH5	ENST00000265104.4	chr5	13737360:13737604:13751186:13751369:13752242:13752398,	13751187	13751369	13751221	13751222	Frame_Shift_Del	TG	-	p.Q3726fs
LUAD	TCGA-MN-A4N4-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107955603	107955603	Frame_Shift_Del	C	-	p.P521fs
LUAD	TCGA-MN-A4N4-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373620	104373620	Frame_Shift_Del	G	-	p.G60fs
LUAD	TCGA-MN-A4N4-01	SPPL2A	ENST00000558934.1,ENST00000261854.5	chr15	50999644:51000071:51012136:51012297:51014320:51014398,	51012137	51012297	51012161	51012162	Frame_Shift_Ins	-	T	p.I488fs
LUAD	TCGA-MN-A4N4-01	ENOSF1	ENST00000340116.7	chr18	697266:697355:706469:706578:712503:712523,694247:694334:706469:706578:712503:712523,697266:697355:706469:706578:712359:712544,	706470	706578	706520	706520	Frame_Shift_Del	C	-	p.E5fs
LUAD	TCGA-MN-A4N4-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807042	22807054	Frame_Shift_Del	GGCCGCTCGGTCC	-	p.EDRAA276fs
LUAD	TCGA-MN-A4N4-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22807585	22807585	Frame_Shift_Del	A	-	p.P99fs
LUAD	TCGA-MN-A4N5-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048440	42048441	Frame_Shift_Ins	-	A	p.R677fs
LUAD	TCGA-MN-A4N5-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688017	60688017	Frame_Shift_Del	C	-	p.G677fs
LUAD	TCGA-MN-A4N5-01	BCL11A	ENST00000537768.1	chr2	60679711:60679801:60687816:60688879:60689416:60689559,	60687817	60688879	60688017	60688017	Frame_Shift_Del	C	-	p.G677fs
LUAD	TCGA-MN-A4N5-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688017	60688017	Frame_Shift_Del	C	-	p.G677fs
LUAD	TCGA-MN-A4N5-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678467	73678468	Frame_Shift_Ins	-	A	p.K1604fs
LUAD	TCGA-MN-A4N5-01	TFAP2B	ENST00000263046.4,ENST00000393655.3	chr6	50803773:50803993:50805687:50805806:50807868:50808010,	50805688	50805806	50805704	50805704	Frame_Shift_Del	G	-	p.G290fs
LUAD	TCGA-MP-A4SV-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38913242:38913364:38917227:38917346:38919093:38919296,	38917228	38917346	38917244	38917245	Frame_Shift_Ins	-	T	p.R3832fs
LUAD	TCGA-MP-A4T2-01	EXOSC1	ENST00000370884.5	chr10	99200927:99201016:99202993:99203068:99205488:99205590,99200927:99201016:99202993:99203068:99205209:99205363,99197456:99197507:99202993:99203068:99205488:99205590,	99202994	99203068	99203050	99203050	Frame_Shift_Del	C	-	p.V56fs
LUAD	TCGA-MP-A4T4-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20434540:20434608:20438482:20438617:20441343:20441749,	20438483	20438617	20438512	20438512	Frame_Shift_Del	G	-	p.V392fs
LUAD	TCGA-MP-A4T4-01	STOX1	ENST00000421961.2,ENST00000399169.4,ENST00000298596.6	chr10	70641713:70641866:70644015:70646374:70652344:70652529,	70644016	70646374	70644800	70644800	Frame_Shift_Del	G	-	p.Q416fs
LUAD	TCGA-MP-A4T8-01	AKR7A2	ENST00000481966.1	chr1	19632511:19632641:19633495:19633595:19634651:19634756,	19633496	19633595	19633590	19633591	Frame_Shift_Ins	-	AC	p.A232fs
LUAD	TCGA-MP-A4TA-01	ZMAT4	ENST00000297737.6,ENST00000519406.1	chr8	40438722:40438780:40532222:40532450:40554763:40554856,	40532223	40532450	40532251	40532251	Frame_Shift_Del	C	-	p.G183fs
LUAD	TCGA-MP-A4TC-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000327520.7,ENST00000542921.1,ENST00000399251.1,ENST00000497922.1	chr10	64949046:64949206:64950653:64950868:64952697:64952851,	64950654	64950868	64950823	64950824	Frame_Shift_Del	TC	-	p.E2041fs
LUAD	TCGA-MP-A4TD-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699359	17699359	Frame_Shift_Del	C	-	p.P1034fs
LUAD	TCGA-MP-A4TD-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
LUAD	TCGA-MP-A4TE-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000382788.3	chr4	3319765:3319778:3344663:3344780:3415798:3415968,3319765:3319778:3344663:3344780:3388142:3388164,	3344664	3344780	3344676	3344676	Frame_Shift_Del	G	-	p.G632fs
LUAD	TCGA-MP-A4TE-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660979	3660980	Frame_Shift_Ins	-	G	p.*227fs
LUAD	TCGA-MP-A4TE-01	MMP13	ENST00000260302.3,ENST00000340273.4	chr11	102816374:102816478:102818619:102818779:102819753:102819887,	102818620	102818779	102818723	102818723	Frame_Shift_Del	T	-	p.I370fs
LUAD	TCGA-MP-A4TE-01	ORC6	ENST00000219097.2,ENST00000563599.1,ENST00000566860.1	chr16	46727004:46727094:46729473:46729586:46729928:46729997,	46729474	46729586	46729524	46729525	Frame_Shift_Ins	-	A	p.E118fs
LUAD	TCGA-MP-A4TF-01	SNRNP200	ENST00000323853.5,ENST00000429650.1,ENST00000497539.1	chr2	96945188:96945297:96947551:96947660:96948938:96949090,	96947552	96947660	96947605	96947605	Frame_Shift_Del	A	-	p.A1658fs
LUAD	TCGA-MP-A4TF-01	PSIP1	ENST00000380738.4,ENST00000380733.4	chr9	15466745:15466857:15468627:15468841:15468954:15469056,	15468628	15468841	15468704	15468707	Frame_Shift_Del	TCTT	-	p.QR447fs
LUAD	TCGA-MP-A4TF-01	ERCC6L2	ENST00000407474.3,ENST00000320486.5	chr9	98740342:98740497:98766801:98766983:98774506:98775485,	98766802	98766983	98766944	98766944	Frame_Shift_Del	C	-	p.T194fs
LUAD	TCGA-MP-A4TF-01	PKNOX2	ENST00000526955.1	chr11	125267769:125267958:125279934:125281761:125298907:125298984,	125279935	125281761	125280765	125280766	Frame_Shift_Del	AC	-	p.N270fs
LUAD	TCGA-MP-A4TF-01	PKNOX2	ENST00000298282.9,ENST00000530517.1,ENST00000532623.1,ENST00000542175.1,ENST00000531116.1	chr11	125280103:125280221:125280674:125280772:125281641:125281761,	125280675	125280772	125280765	125280766	Frame_Shift_Del	AC	-	p.N270fs
LUAD	TCGA-MP-A4TH-01	DPP9	ENST00000597145.1,ENST00000598800.1,ENST00000262960.9,ENST00000597849.1,ENST00000594671.1	chr19	4694672:4694835:4695389:4695567:4697562:4697663,	4695390	4695567	4695508	4695508	Frame_Shift_Del	G	-	p.P412fs
LUAD	TCGA-MP-A4TK-01	RTKN	ENST00000464094.2	chr2	74659687:74659793:74666677:74667104:74667479:74667710,	74666678	74667104	74666725	74666725	Frame_Shift_Del	C	-	p.E9fs
LUAD	TCGA-MP-A4TK-01	CTNND2	ENST00000458100.2,ENST00000504499.1	chr5	11385136:11385341:11397142:11397315:11411647:11411764,11364968:11365002:11397142:11397315:11411647:11411764,	11397143	11397315	11397223	11397223	Frame_Shift_Del	G	-	p.L178fs
LUAD	TCGA-MP-A5C7-01	CCT3	ENST00000368258.3,ENST00000368261.3,ENST00000472765.2,ENST00000295688.3,ENST00000368262.3,ENST00000368259.2	chr1	156280348:156280480:156280740:156280986:156281831:156282012,	156280741	156280986	156280743	156280744	Frame_Shift_Del	GA	-	p.LR466fs
LUAD	TCGA-MP-A5C7-01	HIF1A	ENST00000394997.1	chr14	62162494:62162557:62187096:62187290:62188226:62188372,	62187097	62187290	62187197	62187197	Frame_Shift_Del	C	-	p.P46fs
LUAD	TCGA-MP-A5C7-01	HIF1A	ENST00000337138.4,ENST00000323441.6	chr14	62162494:62162557:62187099:62187290:62188226:62188372,	62187100	62187290	62187197	62187197	Frame_Shift_Del	C	-	p.P46fs
LUAD	TCGA-NJ-A4YF-01	SPAG17	ENST00000336338.5	chr1	118581914:118582067:118583352:118583464:118584425:118584665,	118583353	118583464	118583386	118583387	Frame_Shift_Ins	-	C	p.D1045fs
LUAD	TCGA-NJ-A4YF-01	ZNF318	ENST00000361428.2	chr6	43299512:43299590:43310413:43310617:43316061:43316363,43309849:43309949:43310413:43310617:43316061:43316363,	43310414	43310617	43310508	43310509	Frame_Shift_Ins	-	A	p.*1061fs
LUAD	TCGA-NJ-A4YF-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82580168	82580168	Frame_Shift_Del	G	-	p.R3246fs
LUAD	TCGA-NJ-A4YF-01	ABCB1	ENST00000543898.1,ENST00000265724.3,ENST00000482527.1	chr7	87175264:87175340:87178663:87178834:87179166:87179370,	87178664	87178834	87178756	87178756	Frame_Shift_Del	G	-	p.L545fs
LUAD	TCGA-NJ-A4YF-01	CD163	ENST00000541972.1,ENST00000537044.1,ENST00000359156.4,ENST00000396620.3,ENST00000432237.2	chr12	7639094:7639409:7639489:7639582:7639954:7640269,	7639490	7639582	7639537	7639537	Frame_Shift_Del	C	-	p.G699fs
LUAD	TCGA-NJ-A4YI-01	STPG1	ENST00000337248.4,ENST00000468303.1,ENST00000435187.1,ENST00000374409.1	chr1	24706142:24706313:24710391:24710493:24727808:24727821,24706142:24706313:24710391:24710493:24718050:24718169,	24710392	24710493	24710416	24710416	Frame_Shift_Del	T	-	p.K89fs
LUAD	TCGA-NJ-A4YI-01	STPG1	ENST00000497384.1	chr1	24706142:24706313:24710356:24710493:24718050:24718169,	24710357	24710493	24710416	24710416	Frame_Shift_Del	T	-	p.K89fs
LUAD	TCGA-NJ-A4YI-01	THEMIS2	ENST00000328928.7	chr1	28199068:28199176:28209023:28209554:28211805:28211928,28208481:28208588:28209023:28209554:28211805:28211928,28208481:28208636:28209023:28209554:28211805:28211928,	28209024	28209554	28209508	28209509	Frame_Shift_Del	AG	-	p.Q558fs
LUAD	TCGA-NJ-A4YI-01	THEMIS2	ENST00000373921.3	chr1	28206459:28206565:28208481:28209554:28211805:28211928,	28208482	28209554	28209508	28209509	Frame_Shift_Del	AG	-	p.Q558fs
LUAD	TCGA-NJ-A4YI-01	SLC39A6	ENST00000269187.5,ENST00000590986.1	chr18	33689655:33689708:33691021:33691212:33692463:33692544,	33691022	33691212	33691066	33691067	Frame_Shift_Ins	-	AA	p.T691fs
LUAD	TCGA-NJ-A4YI-01	MTG2	ENST00000466099.1,ENST00000448254.1,ENST00000370823.3,ENST00000536470.1	chr20	60772907:60773023:60773689:60773908:60774174:60774309,	60773690	60773908	60773745	60773745	Frame_Shift_Del	G	-	p.C175fs
LUAD	TCGA-NJ-A4YP-01	CACNA1B	ENST00000413253.1,ENST00000371365.2	chr9	140991005:140991063:140995555:140995652:141000150:141000230,	140995556	140995652	140995585	140995586	Frame_Shift_Ins	-	T	p.I115fs
LUAD	TCGA-NJ-A4YQ-01	KCNH1	ENST00000367007.4	chr1	210977308:210977508:211092981:211093411:211192205:211192598,	211092982	211093411	211093240	211093240	Frame_Shift_Del	C	-	p.D375fs
LUAD	TCGA-NJ-A4YQ-01	MYO7B	ENST00000428314.1,ENST00000389524.4,ENST00000409816.2	chr2	128350368:128350521:128351120:128351219:128354036:128354131,	128351121	128351219	128351195	128351195	Frame_Shift_Del	G	-	p.A740fs
LUAD	TCGA-NJ-A4YQ-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673508	186673508	Frame_Shift_Del	C	-	p.A6581fs
LUAD	TCGA-NJ-A4YQ-01	TFPI2	ENST00000451238.1	chr7	93516572:93516743:93518346:93518535:93519448:93519482,93516572:93516667:93518346:93518535:93519448:93519482,	93518347	93518535	93518518	93518518	Frame_Shift_Del	G	-	p.R97fs
LUAD	TCGA-NJ-A4YQ-01	SND1	ENST00000489417.1,ENST00000354725.3	chr7	127726989:127727103:127729540:127729744:127731888:127731933,	127729541	127729744	127729633	127729633	Frame_Shift_Del	C	-	p.C837fs
LUAD	TCGA-NJ-A4YQ-01	GSDMD	ENST00000534018.1,ENST00000533063.1,ENST00000262580.4,ENST00000526406.1,ENST00000528475.1	chr8	144642772:144642941:144643171:144643274:144643539:144643593,	144643172	144643274	144643223	144643223	Frame_Shift_Del	G	-	p.G211fs
LUAD	TCGA-NJ-A4YQ-01	MS4A1	ENST00000532073.1	chr11	60231760:60231817:60233393:60233630:60234431:60234533,60231760:60231817:60233393:60233630:60234470:60234533,	60233394	60233630	60233596	60233596	Frame_Shift_Del	C	-	p.T180fs
LUAD	TCGA-NJ-A4YQ-01	GUCY1A2	ENST00000282249.2,ENST00000526355.2	chr11	106647164:106647308:106680718:106681204:106810185:106810904,	106680719	106681204	106680934	106680934	Frame_Shift_Del	G	-	p.L494fs
LUAD	TCGA-NJ-A4YQ-01	PKNOX2	ENST00000298282.9,ENST00000530517.1,ENST00000531116.1	chr11	125237741:125237881:125255446:125255618:125267769:125267811,	125255447	125255618	125255455	125255455	Frame_Shift_Del	T	-	p.L79fs
LUAD	TCGA-NJ-A4YQ-01	MARS	ENST00000552007.1	chr12	57883312:57883341:57883678:57883754:57883989:57883999,57882801:57882892:57883678:57883754:57883989:57883999,	57883679	57883754	57883715	57883716	Frame_Shift_Ins	-	C	p.P151fs
LUAD	TCGA-NJ-A55O-01	COL6A3	ENST00000472056.1	chr2	238287278:238287878:238289557:238290142:238305369:238305460,238285760:238285987:238289557:238290142:238296224:238296720,238285760:238285987:238289557:238290142:238305369:238305405,	238289558	238290142	238289948	238289949	Frame_Shift_Ins	-	A	p.N503fs
LUAD	TCGA-NJ-A55O-01	ADAM2	ENST00000521880.1	chr8	39607185:39607263:39618699:39618800:39624366:39624562,	39618700	39618800	39618747	39618747	Frame_Shift_Del	C	-	p.V521fs
LUAD	TCGA-NJ-A55R-01	ATL2	ENST00000539122.1,ENST00000378954.4,ENST00000402054.1,ENST00000405384.2,ENST00000452935.2	chr2	38523049:38523255:38525285:38525717:38526397:38526469,	38525286	38525717	38525341	38525353	Frame_Shift_Del	TCCCCAGAGTATT	-	p.KYSGE522fs
LUAD	TCGA-NJ-A55R-01	ACSS3	ENST00000548387.1,ENST00000261206.3,ENST00000548058.1	chr12	81528594:81528783:81532909:81533044:81536885:81537026,	81532910	81533044	81532956	81532956	Frame_Shift_Del	G	-	p.R231fs
LUAD	TCGA-O1-A52J-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833844	82833845	Frame_Shift_Ins	-	A	p.D1675fs
LUAD	TCGA-O1-A52J-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95602903	95602903	Frame_Shift_Del	A	-	p.A719fs
LUAD	TCGA-05-4249-01	PBLD	ENST00000432941.1,ENST00000358769.2,ENST00000495025.2,ENST00000309049.4,ENST00000336578.1	chr10	70045104:70045167:70048239:70048418:70048687:70048720,	70048240	70048418	70048359	70048375	Frame_Shift_Del	CCTGTGTTTTCAACTTG	-	p.Q186fs
LUAD	TCGA-05-4249-01	COL5A3	ENST00000264828.3	chr19	10080024:10080078:10080250:10080358:10080544:10080598,	10080251	10080358	10080331	10080332	Frame_Shift_Ins	-	T	p.P1339fs
LUAD	TCGA-05-4382-01	SOX6	ENST00000316399.6,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16077297:16077447:16117541:16117664:16119154:16119234,	16117542	16117664	16117639	16117640	Frame_Shift_Ins	-	T	p.I348fs
LUAD	TCGA-05-4382-01	HHIPL1	ENST00000357223.2	chr14	100111479:100111799:100118560:100119207:100123336:100123480,	100118561	100119207	100118789	100118790	Frame_Shift_Ins	-	T	p.L162fs
LUAD	TCGA-05-4382-01	CYP11B1	ENST00000519285.1,ENST00000377675.3,ENST00000292427.4	chr8	143955884:143955902:143956372:143956570:143956649:143956728,	143956373	143956570	143956441	143956442	Frame_Shift_Ins	-	T	p.F443fs
LUAD	TCGA-05-4382-01	ITGB1BP2	ENST00000538820.1,ENST00000373829.3	chrX	70522126:70522183:70522260:70522406:70523111:70523206,	70522261	70522406	70522270	70522271	Frame_Shift_Ins	-	T	p.M61fs
LUAD	TCGA-05-4384-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73676086	73676093	Frame_Shift_Del	ACTCACAC	-	p.Y812fs
LUAD	TCGA-05-4389-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46797804:46797933:46798988:46799102:46799688:46799863,	46798989	46799102	46799028	46799029	Frame_Shift_Ins	-	T	p.N941fs
LUAD	TCGA-05-4390-01	PAPPA2	ENST00000367662.3	chr1	176432431:176432554:176524542:176526377:176563659:176564731,	176524543	176526377	176525976	176525976	Frame_Shift_Del	C	-	p.T173fs
LUAD	TCGA-05-4390-01	NELL1	ENST00000298925.5,ENST00000357134.5,ENST00000325319.5	chr11	21392398:21392494:21555919:21556060:21581734:21581928,	21555920	21556060	21555993	21555993	Frame_Shift_Del	C	-	p.Y573fs
LUAD	TCGA-05-4390-01	CD22	ENST00000270311.6,ENST00000598815.1,ENST00000419549.2,ENST00000085219.5,ENST00000536635.2,ENST00000594250.1,ENST00000341773.6,ENST00000544992.2,ENST00000601769.1	chr19	35832003:35832041:35832245:35832509:35832604:35832627,	35832246	35832509	35832490	35832499	Frame_Shift_Del	CTGGACACTT	-	p.A584fs
LUAD	TCGA-05-4390-01	CD22	ENST00000594125.1	chr19	35832003:35832041:35832428:35832509:35832604:35832627,	35832429	35832509	35832490	35832499	Frame_Shift_Del	CTGGACACTT	-	p.A584fs
LUAD	TCGA-05-4398-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000465835.1,ENST00000413697.1	chr2	100024490:100024593:100027156:100027329:100029192:100029413,	100027157	100027329	100027159	100027159	Frame_Shift_Del	G	-	p.A781fs
LUAD	TCGA-05-4398-01	TCN2	ENST00000215838.3,ENST00000407817.3,ENST00000405742.3,ENST00000450638.1,ENST00000493542.1	chr22	31011702:31011774:31013316:31013482:31018954:31019070,	31013317	31013482	31013404	31013407	Frame_Shift_Del	ACAG	-	p.Y343fs
LUAD	TCGA-05-4398-01	ARPP21	ENST00000187397.4	chr3	35748942:35749033:35750460:35750562:35756930:35756968,35748465:35748574:35750460:35750562:35756930:35756968,	35750461	35750562	35750461	35750461	Frame_Shift_Del	C	-	p.Q266fs
LUAD	TCGA-05-4398-01	VCAN	ENST00000512590.2,ENST00000342785.4	chr5	82807921:82808215:82815167:82818128:82832825:82833066,82807921:82808215:82815167:82818128:82841355:82841469,	82815168	82818128	82815951	82815966	Frame_Shift_Del	TAATTATGCCTGATAA	-	p.L609fs
LUAD	TCGA-05-4398-01	GOPC	ENST00000052569.6	chr6	117894629:117894795:117896339:117896515:117900062:117900227,	117896340	117896515	117896421	117896421	Frame_Shift_Del	C	-	p.R190fs
LUAD	TCGA-05-4398-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3,ENST00000493453.1	chr7	91623934:91624090:91624916:91625114:91630161:91632549,	91624917	91625114	91625048	91625049	Frame_Shift_Ins	-	A	p.Q288fs
LUAD	TCGA-05-4398-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37728847	37728856	Frame_Shift_Del	GTCTCCGAGG	-	p.P1155fs
LUAD	TCGA-05-4403-01	RIMBP2	ENST00000261655.4	chr12	130906997:130907106:130912723:130912882:130919278:130919421,	130912724	130912882	130912881	130912881	Frame_Shift_Del	G	-	p.P735fs
LUAD	TCGA-05-4405-01	SIN3A	ENST00000360439.4,ENST00000394947.3,ENST00000568431.1,ENST00000564778.1,ENST00000394949.4,ENST00000562776.1	chr15	75706627:75706652:75714987:75715164:75722527:75722749,	75714988	75715164	75715034	75715034	Frame_Shift_Del	G	-	p.P107fs
LUAD	TCGA-05-4405-01	SERPINE1	ENST00000223095.4,ENST00000445463.2	chr7	100771809:100771945:100773701:100773935:100775155:100775350,	100773702	100773935	100773778	100773779	Frame_Shift_Del	CA	-	p.T116fs
LUAD	TCGA-05-4410-01	HEPACAM2	ENST00000453812.2,ENST00000394468.2,ENST00000440868.1,ENST00000341723.4	chr7	92826797:92826923:92837892:92838189:92844713:92844998,	92837893	92838189	92837962	92837962	Frame_Shift_Del	A	-	p.C315fs
LUAD	TCGA-05-4417-01	MTPAP	ENST00000263063.4,ENST00000358107.4,ENST00000488290.1	chr10	30601938:30602900:30604891:30604965:30605046:30605139,	30604892	30604965	30604933	30604934	Frame_Shift_Ins	-	A	p.F448fs
LUAD	TCGA-05-4417-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635564	33635565	Frame_Shift_Ins	-	T	p.N783fs
LUAD	TCGA-05-4417-01	SFMBT1	ENST00000296295.6,ENST00000358080.2,ENST00000394752.3,ENST00000394750.1	chr3	52941570:52941749:52945018:52945194:52946553:52946663,	52945019	52945194	52945171	52945172	Frame_Shift_Ins	-	C	p.A585fs
LUAD	TCGA-05-4418-01	ITGA3	ENST00000544892.1,ENST00000506401.2,ENST00000320031.8,ENST00000007722.7,ENST00000505306.1	chr17	48148236:48148294:48148674:48148882:48149349:48149546,	48148675	48148882	48148712	48148713	Frame_Shift_Ins	-	A	p.P263fs
LUAD	TCGA-05-4420-01	LCK	ENST00000333070.4,ENST00000469765.1,ENST00000469956.1,ENST00000336890.5	chr1	32741549:32741664:32741937:32742090:32742207:32742387,	32741938	32742090	32741968	32741969	Frame_Shift_Ins	-	A	p.S221fs
LUAD	TCGA-05-4420-01	CHEK2	ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000402731.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1	chr22	29085122:29085203:29090019:29090105:29091114:29091197,	29090020	29090105	29090083	29090083	Frame_Shift_Del	C	-	p.L466fs
LUAD	TCGA-05-4420-01	UBE2D3	ENST00000505009.1,ENST00000502404.1,ENST00000508474.1,ENST00000504211.1,ENST00000338145.3,ENST00000505307.1,ENST00000343106.5,ENST00000507845.1,ENST00000505207.1,ENST00000394803.5,ENST00000510129.1,ENST00000508635.1,ENST00000349311.8,ENST00000394801.4,ENST00000350435.7,ENST00000453744.2,ENST00000321805.7,ENST00000357194.6,ENST00000394804.2	chr4	103720623:103720657:103722610:103722716:103723717:103723795,	103722611	103722716	103722680	103722681	Frame_Shift_Ins	-	A	p.I78fs
LUAD	TCGA-05-4425-01	TMEM101	ENST00000206380.3,ENST00000589334.1,ENST00000587529.1	chr17	42090513:42090523:42091724:42091905:42092183:42092320,	42091725	42091905	42091891	42091891	Frame_Shift_Del	G	-	p.P51fs
LUAD	TCGA-05-4425-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143009	47143010	Frame_Shift_Ins	-	A	p.F1651fs
LUAD	TCGA-05-4426-01	KIF13A	ENST00000378814.5	chr6	17759484:17761108:17764385:17765177:17772138:17772290,	17764386	17765177	17764530	17764531	Frame_Shift_Del	CT	-	p.E1743fs
LUAD	TCGA-05-4432-01	RHBG	ENST00000544720.1,ENST00000451864.2	chr1	156351137:156351304:156351858:156351992:156352538:156352660,	156351859	156351992	156351938	156351938	Frame_Shift_Del	C	-	p.A353fs
LUAD	TCGA-05-4432-01	AKR1B1	ENST00000285930.4,ENST00000487438.1,ENST00000434222.1,ENST00000498771.1,ENST00000465351.1	chr7	134133748:134133871:134134471:134134549:134135537:134135654,	134134472	134134549	134134483	134134483	Frame_Shift_Del	C	-	p.D140fs
LUAD	TCGA-05-4433-01	SLC7A6	ENST00000219343.6,ENST00000379152.3,ENST00000566454.1,ENST00000567325.1	chr16	68330266:68330416:68330529:68330713:68331136:68331336,	68330530	68330713	68330539	68330539	Frame_Shift_Del	T	-	p.F427fs
LUAD	TCGA-05-4433-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10633115:10633246:10637045:10637106:10639115:10639370,	10637046	10637106	10637059	10637060	Frame_Shift_Ins	-	GA	p.L247fs
LUAD	TCGA-05-5428-01	CTNNA2	ENST00000466387.1,ENST00000496558.1,ENST00000402739.4,ENST00000541047.1,ENST00000361291.4,ENST00000540488.1	chr2	79971512:79971708:80085138:80085305:80096941:80097061,	80085139	80085305	80085218	80085218	Frame_Shift_Del	G	-	p.A126fs
LUAD	TCGA-05-5428-01	NFXL1	ENST00000464756.2,ENST00000381538.3,ENST00000507131.1,ENST00000507489.1,ENST00000329043.3	chr4	47886362:47886454:47887514:47887674:47887895:47888016,	47887515	47887674	47887580	47887581	Frame_Shift_Ins	-	A	p.L586fs
LUAD	TCGA-05-5428-01	THOC3	ENST00000265097.4,ENST00000513482.1	chr5	175391953:175392158:175394113:175394270:175394944:175395271,	175394114	175394270	175394224	175394234	Frame_Shift_Del	AGCTGGTCCAC	-	p.V102fs
LUAD	TCGA-05-5429-01	KLHL21	ENST00000377658.4,ENST00000467612.1,ENST00000496707.1	chr1	6653440:6653718:6655544:6655617:6659106:6659512,	6655545	6655617	6655560	6655561	Frame_Shift_Ins	-	A	p.I495fs
LUAD	TCGA-05-5715-01	UBQLN1	ENST00000257468.7	chr9	86278789:86278958:86279944:86280060:86284099:86284206,	86279945	86280060	86279969	86279970	Frame_Shift_Ins	-	T	p.T475fs
LUAD	TCGA-38-4628-01	HNRNPC	ENST00000555309.1,ENST00000554417.1,ENST00000557201.1,ENST00000556513.1,ENST00000554539.1,ENST00000320084.7,ENST00000554383.1,ENST00000555914.1,ENST00000554455.1,ENST00000420743.2,ENST00000556897.1,ENST00000556628.1,ENST00000430246.2,ENST00000553300.1,ENST00000556142.1,ENST00000557157.1,ENST00000553753.1,ENST00000449098.1,ENST00000336053.6,ENST00000554969.1	chr14	21679968:21680082:21681118:21681276:21698477:21698525,	21681119	21681276	21681149	21681161	Frame_Shift_Del	CACTCTTAGAATT	-	p.N174fs
LUAD	TCGA-38-4631-01	THSD7B	ENST00000409968.1,ENST00000272643.3,ENST00000413152.2	chr2	138163182:138163377:138169178:138169442:138208414:138208593,	138169179	138169442	138169367	138169367	Frame_Shift_Del	G	-	p.G931fs
LUAD	TCGA-38-4632-01	PSME4	ENST00000404125.1,ENST00000421748.2,ENST00000389993.3	chr2	54120810:54120936:54122143:54122213:54122719:54122873,	54122144	54122213	54122188	54122188	Frame_Shift_Del	C	-	p.E1290fs
LUAD	TCGA-38-4632-01	AGAP3	ENST00000397238.2,ENST00000461065.1,ENST00000463381.1,ENST00000473633.1	chr7	150839249:150839340:150839498:150839721:150840427:150840683,	150839499	150839721	150839627	150839628	Frame_Shift_Ins	-	T	p.L727fs
LUAD	TCGA-44-2656-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503458	32503459	Frame_Shift_Ins	-	G	p.R310fs
LUAD	TCGA-44-2656-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503458	32503459	Frame_Shift_Ins	-	G	p.R310fs
LUAD	TCGA-44-2656-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.P468fs
LUAD	TCGA-44-2656-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048867	42048868	Frame_Shift_Ins	-	G	p.P534fs
LUAD	TCGA-44-2656-01	PIK3R3	ENST00000354242.4,ENST00000372006.1,ENST00000425892.1,ENST00000420542.1,ENST00000423209.1	chr1	46543186:46543285:46546313:46546422:46597518:46597628,	46546314	46546422	46546323	46546324	Frame_Shift_Ins	-	C	p.D69fs
LUAD	TCGA-44-2656-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.P117fs
LUAD	TCGA-44-2656-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.V137fs
LUAD	TCGA-44-2656-01	SPAG17	ENST00000336338.5	chr1	118581914:118582067:118583352:118583464:118584425:118584665,	118583353	118583464	118583386	118583387	Frame_Shift_Ins	-	C	p.G1044fs
LUAD	TCGA-44-2656-01	PIAS3	ENST00000393046.2,ENST00000369298.1,ENST00000369299.3,ENST00000498436.1,ENST00000393045.2	chr1	145578949:145579000:145579241:145579332:145580187:145580322,	145579242	145579332	145579284	145579285	Frame_Shift_Ins	-	C	p.F207fs
LUAD	TCGA-44-2656-01	PIAS3	ENST00000369298.1,ENST00000475261.1,ENST00000393045.2	chr1	145581403:145581564:145583914:145584048:145584128:145584297,	145583915	145584048	145584022	145584023	Frame_Shift_Ins	-	C	p.C418fs
LUAD	TCGA-44-2656-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F141fs
LUAD	TCGA-44-2656-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F141fs
LUAD	TCGA-44-2656-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F141fs
LUAD	TCGA-44-2656-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708444	156708445	Frame_Shift_Ins	-	G	p.H18fs
LUAD	TCGA-44-2656-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.V377fs
LUAD	TCGA-44-2656-01	VANGL2	ENST00000368061.2	chr1	160385851:160385972:160388791:160389399:160390200:160390337,	160388792	160389399	160388801	160388802	Frame_Shift_Ins	-	G	p.W68fs
LUAD	TCGA-44-2656-01	SLAMF1	ENST00000355199.3,ENST00000302035.6	chr1	160582277:160582370:160593885:160593975:160604402:160604682,160589567:160589639:160593885:160593975:160604402:160604682,	160593886	160593975	160593935	160593936	Frame_Shift_Ins	-	C	p.G247fs
LUAD	TCGA-44-2656-01	NAV1	ENST00000367295.1,ENST00000367302.1,ENST00000367297.4,ENST00000367300.3,ENST00000367296.4,ENST00000295624.6	chr1	201778569:201778665:201779073:201779233:201779650:201779886,	201779074	201779233	201779175	201779176	Frame_Shift_Ins	-	C	p.E1498fs
LUAD	TCGA-44-2656-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.I85fs
LUAD	TCGA-44-2656-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877089	16877090	Frame_Shift_Ins	-	G	p.Q3429fs
LUAD	TCGA-44-2656-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.P314fs
LUAD	TCGA-44-2656-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322258	27322259	Frame_Shift_Ins	-	T	p.K1233fs
LUAD	TCGA-44-2656-01	RHOBTB1	ENST00000357917.4,ENST00000337910.5	chr10	62637665:62637816:62645869:62645988:62647969:62648227,	62645870	62645988	62645896	62645897	Frame_Shift_Ins	-	C	p.G516fs
LUAD	TCGA-44-2656-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525559	75525560	Frame_Shift_Ins	-	C	p.V456fs
LUAD	TCGA-44-2656-01	MYOF	ENST00000359263.4,ENST00000371489.1,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4	chr10	95168543:95168672:95169329:95169496:95185827:95185915,	95169330	95169496	95169434	95169435	Frame_Shift_Ins	-	C	p.G165fs
LUAD	TCGA-44-2656-01	CUTC	ENST00000370476.5,ENST00000493385.1,ENST00000471520.1,ENST00000370472.4	chr10	101496002:101496074:101499466:101499526:101502909:101503080,	101499467	101499526	101499503	101499504	Frame_Shift_Ins	-	G	p.E57fs
LUAD	TCGA-44-2656-01	CPN1	ENST00000441382.1,ENST00000370418.3	chr10	101814103:101814203:101816769:101816909:101823370:101823482,	101816770	101816909	101816832	101816833	Frame_Shift_Ins	-	G	p.P316fs
LUAD	TCGA-44-2656-01	APIP	ENST00000278359.5,ENST00000527830.1,ENST00000532428.2,ENST00000395787.3	chr11	34904222:34904363:34904883:34905051:34909839:34909975,	34904884	34905051	34904908	34904909	Frame_Shift_Ins	-	C	p.E202fs
LUAD	TCGA-44-2656-01	SLC1A2	ENST00000606205.1,ENST00000395753.1,ENST00000278379.3,ENST00000531628.1,ENST00000395750.1	chr11	35308303:35308498:35313833:35314067:35323065:35323075,	35313834	35314067	35313880	35313881	Frame_Shift_Ins	-	A	p.F348fs
LUAD	TCGA-44-2656-01	CPSF7	ENST00000477890.2	chr11	61183576:61183634:61183835:61183991:61187420:61187566,	61183836	61183991	61183884	61183885	Frame_Shift_Ins	-	G	p.P219fs
LUAD	TCGA-44-2656-01	PPFIA1	ENST00000389547.3,ENST00000530294.1,ENST00000253925.7	chr11	70189856:70189998:70194294:70194526:70200406:70200558,	70194295	70194526	70194406	70194407	Frame_Shift_Ins	-	C	p.I681fs
LUAD	TCGA-44-2656-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.I539fs
LUAD	TCGA-44-2656-01	GRM5	ENST00000305447.4,ENST00000418177.2	chr11	88240977:88242672:88258476:88258572:88300220:88301160,	88258477	88258572	88258517	88258518	Frame_Shift_Ins	-	G	p.P895fs
LUAD	TCGA-44-2656-01	DSCAML1	ENST00000527706.1,ENST00000321322.6	chr11	117314601:117314755:117321264:117321404:117329469:117329625,	117321265	117321404	117321331	117321332	Frame_Shift_Ins	-	G	p.P1274fs
LUAD	TCGA-44-2656-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018467	134018468	Frame_Shift_Ins	-	G	p.I291fs
LUAD	TCGA-44-2656-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	440984:441104:442652:442815:443406:443494,	442653	442815	442810	442811	Frame_Shift_Ins	-	C	p.E499fs
LUAD	TCGA-44-2656-01	MBNL2	ENST00000343600.4,ENST00000376673.3,ENST00000469707.1,ENST00000345429.6	chr13	97874608:97874785:97927885:97928663:97986529:97986694,	97927886	97928663	97928603	97928604	Frame_Shift_Ins	-	C	p.H38fs
LUAD	TCGA-44-2656-01	SLC7A8	ENST00000529705.2,ENST00000316902.7,ENST00000453702.1	chr14	23607129:23607233:23608632:23608756:23609679:23609833,	23608633	23608756	23608664	23608665	Frame_Shift_Ins	-	G	p.Q294fs
LUAD	TCGA-44-2656-01	SAMD4A	ENST00000392067.3,ENST00000357634.3,ENST00000554335.1	chr14	55168779:55169298:55203741:55204005:55215532:55215642,	55203742	55204005	55203891	55203892	Frame_Shift_Ins	-	C	p.A288fs
LUAD	TCGA-44-2656-01	GALC	ENST00000544807.2,ENST00000555000.1	chr14	88400242:88400343:88406248:88406325:88407738:88407902,	88406249	88406325	88406276	88406276	Frame_Shift_Del	T	-	p.K628fs
LUAD	TCGA-44-2656-01	FMN1	ENST00000559047.1	chr15	33300214:33300276:33357157:33357275:33380999:33381175,	33357158	33357275	33357207	33357208	Frame_Shift_Ins	-	G	p.P481fs
LUAD	TCGA-44-2656-01	BUB1B	ENST00000287598.6,ENST00000412359.3	chr15	40475924:40476084:40477365:40477580:40477751:40477843,	40477366	40477580	40477505	40477506	Frame_Shift_Ins	-	C	p.A297fs
LUAD	TCGA-44-2656-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967993	64967994	Frame_Shift_Ins	-	C	p.V980fs
LUAD	TCGA-44-2656-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489924	20489925	Frame_Shift_Ins	-	C	p.L402fs
LUAD	TCGA-44-2656-01	TNRC6A	ENST00000491718.1,ENST00000568903.1,ENST00000315183.7,ENST00000395799.3	chr16	24803010:24803138:24804793:24804970:24805864:24806040,	24804794	24804970	24804889	24804890	Frame_Shift_Ins	-	G	p.W1091fs
LUAD	TCGA-44-2656-01	SEZ6L2	ENST00000537485.1,ENST00000350527.3,ENST00000568407.2,ENST00000308713.5,ENST00000346932.5	chr16	29889607:29889746:29891184:29891385:29896906:29897070,	29891185	29891385	29891248	29891249	Frame_Shift_Ins	-	G	p.P503fs
LUAD	TCGA-44-2656-01	PRPSAP2	ENST00000395656.2,ENST00000268835.2,ENST00000574451.1,ENST00000419071.2,ENST00000536323.1,ENST00000492129.1	chr17	18827226:18827297:18832123:18832270:18833852:18834047,	18832124	18832270	18832235	18832236	Frame_Shift_Ins	-	C	p.A306fs
LUAD	TCGA-44-2656-01	SKAP1	ENST00000584924.1,ENST00000581419.1,ENST00000584709.1,ENST00000336915.6	chr17	46259755:46259819:46262084:46262209:46265204:46265288,	46262085	46262209	46262152	46262153	Frame_Shift_Ins	-	G	p.H167fs
LUAD	TCGA-44-2656-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246441	56246442	Frame_Shift_Ins	-	C	p.G522fs
LUAD	TCGA-44-2656-01	WDR35	ENST00000281405.4,ENST00000345530.3	chr2	20132143:20132208:20133161:20133272:20135231:20135364,	20133162	20133272	20133236	20133237	Frame_Shift_Del	CA	-	p.C872fs
LUAD	TCGA-44-2656-01	GMCL1	ENST00000282570.3,ENST00000471404.1	chr2	70071262:70071328:70074674:70074759:70076783:70076874,	70074675	70074759	70074752	70074753	Frame_Shift_Ins	-	A	p.L279fs
LUAD	TCGA-44-2656-01	IL1R2	ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102636121:102636274:102638648:102638711:102640994:102641130,	102638649	102638711	102638681	102638682	Frame_Shift_Ins	-	C	p.S241fs
LUAD	TCGA-44-2656-01	ANAPC1	ENST00000427997.1,ENST00000341068.3	chr2	112582542:112582613:112582707:112582744:112583353:112583432,	112582708	112582744	112582738	112582739	Frame_Shift_Ins	-	G	p.Q904fs
LUAD	TCGA-44-2656-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.T685fs
LUAD	TCGA-44-2656-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H202fs
LUAD	TCGA-44-2656-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H202fs
LUAD	TCGA-44-2656-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.V81fs
LUAD	TCGA-44-2656-01	RPN2	ENST00000237530.6,ENST00000456400.1,ENST00000373622.5	chr20	35858393:35858462:35860698:35860794:35862422:35862498,	35860699	35860794	35860725	35860726	Frame_Shift_Ins	-	C	p.R536fs
LUAD	TCGA-44-2656-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676873	36676874	Frame_Shift_Ins	-	C	p.P135fs
LUAD	TCGA-44-2656-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.P102fs
LUAD	TCGA-44-2656-01	GNAS	ENST00000482112.1,ENST00000354359.7,ENST00000371085.3,ENST00000477931.1,ENST00000496934.1,ENST00000472183.1,ENST00000469431.1,ENST00000306090.10,ENST00000494081.1,ENST00000371102.4,ENST00000467321.1,ENST00000419558.1,ENST00000488546.1,ENST00000478585.1,ENST00000604005.1,ENST00000313949.7,ENST00000371095.3,ENST00000349036.3,ENST00000476196.1,ENST00000476935.1,ENST00000488652.1,ENST00000450130.1,ENST00000468895.1,ENST00000485673.1,ENST00000603546.1,ENST00000487862.1,ENST00000371100.4,ENST00000470512.1,ENST00000371075.3,ENST00000464788.1,ENST00000467227.1,ENST00000492907.1,ENST00000480232.1,ENST00000480975.1,ENST00000490374.1,ENST00000487981.1,ENST00000481039.1,ENST00000265620.7,ENST00000464624.2	chr20	57478591:57478640:57478726:57478846:57480437:57480475,	57478727	57478846	57478756	57478757	Frame_Shift_Ins	-	C	p.V757fs
LUAD	TCGA-44-2656-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
LUAD	TCGA-44-2656-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
LUAD	TCGA-44-2656-01	RSPH1	ENST00000291536.3	chr21	43912867:43912973:43913075:43913189:43916242:43916296,	43913076	43913189	43913175	43913176	Frame_Shift_Ins	-	C	p.G23fs
LUAD	TCGA-44-2656-01	TPST2	ENST00000398110.2,ENST00000403880.1,ENST00000338754.4	chr22	26928660:26928711:26932253:26932452:26936754:26936837,	26932254	26932452	26932298	26932299	Frame_Shift_Ins	-	G	p.P332fs
LUAD	TCGA-44-2656-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3,ENST00000427771.1	chr3	42240668:42240745:42242309:42242546:42243927:42244244,	42242310	42242546	42242449	42242450	Frame_Shift_Ins	-	C	p.T444fs
LUAD	TCGA-44-2656-01	PFKFB4	ENST00000545984.1	chr3	48562997:48563102:48573688:48573896:48575930:48576052,	48573689	48573896	48573780	48573781	Frame_Shift_Ins	-	G	p.R250fs
LUAD	TCGA-44-2656-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
LUAD	TCGA-44-2656-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
LUAD	TCGA-44-2656-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877785	150877786	Frame_Shift_Ins	-	C	p.G335fs
LUAD	TCGA-44-2656-01	GOLIM4	ENST00000309027.4,ENST00000470487.1	chr3	167728022:167728206:167728530:167728611:167742313:167742382,	167728531	167728611	167728581	167728581	Frame_Shift_Del	T	-	p.R631fs
LUAD	TCGA-44-2656-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769341	176769342	Frame_Shift_Ins	-	T	p.N126fs
LUAD	TCGA-44-2656-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5757990:5758089:5785278:5785491:5795334:5795444,	5785279	5785491	5785361	5785362	Frame_Shift_Ins	-	C	p.L549fs
LUAD	TCGA-44-2656-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89042786:89042944:89052212:89052365:89052954:89053069,	89052213	89052365	89052270	89052271	Frame_Shift_Ins	-	T	p.N158fs
LUAD	TCGA-44-2656-01	FGG	ENST00000404648.3,ENST00000405164.1,ENST00000492082.1	chr4	155525324:155525506:155526048:155526218:155527856:155527974,	155526049	155526218	155526058	155526059	Frame_Shift_Ins	-	C	p.G430fs
LUAD	TCGA-44-2656-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.E1044fs
LUAD	TCGA-44-2656-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402939	52402940	Frame_Shift_Ins	-	G	p.P84fs
LUAD	TCGA-44-2656-01	PCSK1	ENST00000311106.3,ENST00000508626.1	chr5	95743926:95744027:95746477:95746690:95748021:95748194,	95746478	95746690	95746639	95746640	Frame_Shift_Ins	-	C	p.G311fs
LUAD	TCGA-44-2656-01	CHD1	ENST00000505657.1,ENST00000514344.1,ENST00000284049.3,ENST00000512392.1,ENST00000512844.1	chr5	98192270:98192429:98193883:98194094:98194667:98194719,	98193884	98194094	98193965	98193966	Frame_Shift_Ins	-	T	p.S1569fs
LUAD	TCGA-44-2656-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.G2553fs
LUAD	TCGA-44-2656-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127647576:127647645:127648325:127648487:127653840:127653963,	127648326	127648487	127648336	127648337	Frame_Shift_Ins	-	G	p.P1623fs
LUAD	TCGA-44-2656-01	ARAP3	ENST00000513878.1,ENST00000508305.1,ENST00000239440.4	chr5	141051461:141051547:141051668:141051868:141052118:141052225,	141051669	141051868	141051692	141051693	Frame_Shift_Ins	-	C	p.V521fs
LUAD	TCGA-44-2656-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922939	150922940	Frame_Shift_Ins	-	G	p.P2583fs
LUAD	TCGA-44-2656-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837307	17837308	Frame_Shift_Ins	-	C	p.G319fs
LUAD	TCGA-44-2656-01	DCDC2	ENST00000378454.3	chr6	24178557:24178860:24205229:24205330:24278276:24278439,	24205230	24205330	24205282	24205283	Frame_Shift_Ins	-	C	p.A324fs
LUAD	TCGA-44-2656-01	HLA-DOA	ENST00000450833.2	chr6	32974856:32974992:32975087:32975369:32975789:32975831,32974577:32974618:32975087:32975369:32975789:32975831,	32975088	32975369	32975278	32975279	Frame_Shift_Ins	-	G	p.P141fs
LUAD	TCGA-44-2656-01	HLA-DOA	ENST00000485901.1	chr6	32974577:32974618:32974856:32975369:32975789:32975831,	32974857	32975369	32975278	32975279	Frame_Shift_Ins	-	G	p.P141fs
LUAD	TCGA-44-2656-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42237162	42237163	Frame_Shift_Ins	-	G	p.H56fs
LUAD	TCGA-44-2656-01	PTK7	ENST00000230418.4,ENST00000481273.1,ENST00000349241.2,ENST00000230419.4,ENST00000345201.2,ENST00000470019.1	chr6	43109668:43109779:43111154:43111358:43112188:43112344,43109925:43110037:43111154:43111358:43112188:43112344,	43111155	43111358	43111195	43111196	Frame_Shift_Ins	-	C	p.P696fs
LUAD	TCGA-44-2656-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415681	86415682	Frame_Shift_Ins	-	C	p.V191fs
LUAD	TCGA-44-2656-01	ZCWPW1	ENST00000398027.2	chr7	99998716:99998959:100000138:100000199:100001316:100001408,99999511:99999664:100000138:100000199:100001316:100001408,	100000139	100000199	100000150	100000151	Frame_Shift_Ins	-	T	p.T487fs
LUAD	TCGA-44-2656-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173277	126173278	Frame_Shift_Ins	-	G	p.H720fs
LUAD	TCGA-44-2656-01	NRG1	ENST00000518104.1,ENST00000338921.4,ENST00000539990.1,ENST00000287842.3,ENST00000519301.1,ENST00000405005.3,ENST00000356819.4,ENST00000521670.1,ENST00000523534.1,ENST00000287845.5,ENST00000341377.5,ENST00000523079.1	chr8	32611889:32611992:32613920:32614047:32616823:32616954,	32613921	32614047	32614020	32614021	Frame_Shift_Ins	-	C	p.P301fs
LUAD	TCGA-44-2656-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488248	70488249	Frame_Shift_Ins	-	G	p.H72fs
LUAD	TCGA-44-2656-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377691	77377692	Frame_Shift_Ins	-	C	p.A1299fs
LUAD	TCGA-44-2656-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.Q25fs
LUAD	TCGA-44-2657-01	OVOL2	ENST00000483661.1,ENST00000278780.6	chr20	18005242:18005596:18022177:18022367:18037300:18037521,	18022178	18022367	18022316	18022317	Frame_Shift_Del	CA	-	p.C124fs
LUAD	TCGA-44-2659-01	LRRC32	ENST00000404995.1	chr11	76368613:76369078:76370626:76372552:76376914:76377002,	76370627	76372552	76371428	76371429	Frame_Shift_Ins	-	G	p.P403fs
LUAD	TCGA-44-2661-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121039	95121040	Frame_Shift_Ins	-	A	p.F185fs
LUAD	TCGA-44-2662-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151151947	151151951	Frame_Shift_Del	CCTCC	-	p.S567fs
LUAD	TCGA-44-2666-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000481227.2,ENST00000313382.9,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144857639:144857728:144863317:144863442:144864134:144864324,144859890:144859998:144863317:144863442:144864134:144864324,	144863318	144863442	144863324	144863324	Frame_Shift_Del	G	-	p.L2027fs
LUAD	TCGA-44-2666-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
LUAD	TCGA-44-2666-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R10fs
LUAD	TCGA-44-3396-01	RPRD1B	ENST00000462548.2	chr20	36668872:36668966:36676749:36676883:36685933:36686046,36662233:36662500:36676749:36676883:36685933:36686046,	36676750	36676883	36676873	36676874	Frame_Shift_Ins	-	C	p.P135fs
LUAD	TCGA-44-3396-01	RPL30	ENST00000396070.2	chr8	99054034:99054078:99054872:99054946:99057170:99057316,	99054873	99054946	99054903	99054904	Frame_Shift_Del	TG	-	p.Y89fs
LUAD	TCGA-44-3396-01	RPL30	ENST00000287038.3,ENST00000521726.1,ENST00000521291.1	chr8	99054034:99054078:99054872:99055003:99057170:99057316,	99054873	99055003	99054903	99054904	Frame_Shift_Del	TG	-	p.Y89fs
LUAD	TCGA-44-3919-01	UXS1	ENST00000497604.1,ENST00000409032.1,ENST00000283148.7,ENST00000409501.3,ENST00000540130.1	chr2	106710059:106710613:106713173:106713277:106715171:106715229,	106713174	106713277	106713239	106713239	Frame_Shift_Del	C	-	p.D356fs
LUAD	TCGA-44-4112-01	ASTN1	ENST00000361833.2,ENST00000281881.3,ENST00000424564.2,ENST00000367654.3,ENST00000367657.3	chr1	176926813:176926964:176927480:176927618:176934298:176934373,	176927481	176927618	176927566	176927566	Frame_Shift_Del	C	-	p.V551fs
LUAD	TCGA-44-4112-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371236	240371236	Frame_Shift_Del	C	-	p.P1042fs
LUAD	TCGA-44-4112-01	YBX2	ENST00000571485.1,ENST00000007699.5,ENST00000571464.1,ENST00000570720.1,ENST00000571834.1	chr17	7192855:7193044:7193286:7193390:7193569:7193711,	7193287	7193390	7193314	7193314	Frame_Shift_Del	G	-	p.P274fs
LUAD	TCGA-44-4112-01	UGT3A1	ENST00000333811.4	chr5	35968120:35968235:35988551:35988653:35991066:35991707,35968120:35968235:35988551:35988653:35991248:35991436,35968120:35968235:35988551:35988653:35997340:35997431,	35988552	35988653	35988559	35988560	Frame_Shift_Ins	-	A	p.L63fs
LUAD	TCGA-44-4112-01	NONO	ENST00000418921.1	chrX	70511766:70511822:70514247:70514378:70516414:70516510,	70514248	70514378	70514295	70514295	Frame_Shift_Del	A	-	p.G189fs
LUAD	TCGA-44-4112-01	NONO	ENST00000276079.8,ENST00000535149.1,ENST00000373856.3,ENST00000373841.1,ENST00000471419.2	chrX	70511766:70511822:70514076:70514378:70516414:70516510,	70514077	70514378	70514295	70514295	Frame_Shift_Del	A	-	p.G189fs
LUAD	TCGA-44-6775-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770846	118770847	Frame_Shift_Ins	-	C	p.S1062fs
LUAD	TCGA-44-6776-01	SLC17A9	ENST00000488738.1,ENST00000459704.2,ENST00000483113.1,ENST00000370351.4,ENST00000370349.3	chr20	61596483:61596518:61596961:61597077:61597876:61597932,	61596962	61597077	61597059	61597059	Frame_Shift_Del	T	-	p.L348fs
LUAD	TCGA-44-6777-01	HADH	ENST00000309522.3,ENST00000454409.2,ENST00000505878.1	chr4	108944629:108944719:108948843:108948916:108954331:108954448,	108948844	108948916	108948874	108948875	Frame_Shift_Ins	-	T	p.L223fs
LUAD	TCGA-44-6777-01	STEAP1	ENST00000297205.2,ENST00000475789.1	chr7	89789071:89789186:89790118:89790631:89791227:89791392,	89790119	89790631	89790346	89790352	Frame_Shift_Del	ATATTTT	-	p.Q104fs
LUAD	TCGA-44-6779-01	UGDH	ENST00000515021.1,ENST00000316423.6,ENST00000509391.1,ENST00000506179.1,ENST00000514106.1	chr4	39512434:39512481:39515702:39515804:39522970:39523095,	39515703	39515804	39515752	39515753	Frame_Shift_Ins	-	A	p.S72fs
LUAD	TCGA-44-6779-01	UGDH	ENST00000503779.1,ENST00000510881.1	chr4	39512434:39512481:39515702:39515800:39522970:39523095,	39515703	39515800	39515752	39515753	Frame_Shift_Ins	-	A	p.S72fs
LUAD	TCGA-44-7662-01	SNX7	ENST00000529992.1	chr1	99150440:99150623:99156630:99156741:99161073:99161272,	99156631	99156741	99156727	99156727	Frame_Shift_Del	A	-	p.T154fs
LUAD	TCGA-44-7662-01	CRMP1	ENST00000512574.1,ENST00000324989.7,ENST00000511535.1,ENST00000397890.2	chr4	5857869:5858034:5862752:5862937:5868394:5868483,	5862753	5862937	5862865	5862865	Frame_Shift_Del	G	-	p.P67fs
LUAD	TCGA-44-7670-01	IFI44	ENST00000370747.4,ENST00000438486.1,ENST00000545124.1,ENST00000470323.1,ENST00000472152.1,ENST00000495254.1	chr1	79119927:79119964:79120698:79120894:79121046:79121196,	79120699	79120894	79120772	79120773	Frame_Shift_Ins	-	T	p.L190fs
LUAD	TCGA-44-7670-01	PARP4	ENST00000381989.3	chr13	25005514:25005614:25008532:25009612:25015983:25016106,	25008533	25009612	25009604	25009605	Frame_Shift_Ins	-	A	p.L1225fs
LUAD	TCGA-44-7670-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961546	41961547	Frame_Shift_Ins	-	T	p.V152fs
LUAD	TCGA-44-7670-01	CDK14	ENST00000406263.1,ENST00000380050.3,ENST00000265741.3	chr7	90376995:90377090:90419887:90419967:90492489:90492584,	90419888	90419967	90419930	90419930	Frame_Shift_Del	G	-	p.Q169fs
LUAD	TCGA-44-7671-01	SNX1	ENST00000559844.1,ENST00000261889.5,ENST00000561026.1,ENST00000380285.3,ENST00000560829.1	chr15	64424027:64424091:64426862:64427006:64428528:64428608,	64426863	64427006	64426931	64426937	Frame_Shift_Del	GCGGGAG	-	p.K430fs
LUAD	TCGA-44-7672-01	LY9	ENST00000368035.1,ENST00000368040.1	chr1	160789110:160789164:160793296:160793586:160797537:160798039,	160793297	160793586	160793397	160793398	Frame_Shift_Ins	-	A	p.E547fs
LUAD	TCGA-49-4487-01	MX2	ENST00000330714.3	chr21	42749715:42749908:42751943:42752078:42754336:42754491,	42751944	42752078	42752078	42752078	Frame_Shift_Del	G	-	p.A193fs
LUAD	TCGA-49-4490-01	LONP1	ENST00000587552.1,ENST00000590206.1,ENST00000585374.1,ENST00000590729.1,ENST00000540670.2,ENST00000360614.3,ENST00000590558.1,ENST00000593119.1	chr19	5696697:5696768:5699037:5699216:5700799:5700938,	5699038	5699216	5699070	5699071	Frame_Shift_Ins	-	C	p.G551fs
LUAD	TCGA-49-4505-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000537515.1,ENST00000444005.1	chr2	183595756:183595834:183597225:183597269:183600975:183601113,	183597226	183597269	183597269	183597269	Frame_Shift_Del	G	-	p.L283fs
LUAD	TCGA-49-4506-01	ACTR2	ENST00000260641.5	chr2	65466985:65467096:65473657:65473873:65478160:65478233,	65473658	65473873	65473856	65473859	Frame_Shift_Del	AGAG	-	p.R120fs
LUAD	TCGA-49-4506-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198725	20198726	Frame_Shift_Ins	-	A	p.W420fs
LUAD	TCGA-49-4507-01	PSEN2	ENST00000422240.2,ENST00000366783.3,ENST00000496965.1,ENST00000366782.1,ENST00000495488.1,ENST00000391872.2,ENST00000340188.4	chr1	227069588:227069749:227071405:227071620:227073238:227073269,	227071406	227071620	227071533	227071534	Frame_Shift_Ins	-	CA	p.M90fs
LUAD	TCGA-49-4512-01	GLIPR1	ENST00000550491.1,ENST00000266659.3	chr12	75875613:75875859:75884185:75884298:75889356:75889442,	75884186	75884298	75884200	75884201	Frame_Shift_Ins	-	A	p.D145fs
LUAD	TCGA-49-6744-01	MED13	ENST00000397786.2,ENST00000578132.1	chr17	60106901:60107012:60107211:60107374:60108804:60108999,	60107212	60107374	60107282	60107283	Frame_Shift_Del	GT	-	p.I367fs
LUAD	TCGA-49-6767-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29652837:29653270:29654516:29654857:29657313:29657516,	29654517	29654857	29654741	29654742	Frame_Shift_Ins	-	T	p.W1831fs
LUAD	TCGA-50-5044-01	C11orf74	ENST00000528092.1	chr11	36631630:36631789:36669565:36669705:36680568:36680612,36657600:36657667:36669565:36669705:36680568:36680612,36654833:36654988:36669565:36669705:36680568:36680612,	36669566	36669705	36669602	36669620	Frame_Shift_Del	TAAGCACCAGCATTCCTTC	-	p.V132fs
LUAD	TCGA-50-5049-01	DDA1	ENST00000359866.4,ENST00000596582.1,ENST00000593466.1	chr19	17425146:17425198:17426742:17426804:17430354:17430496,	17426743	17426804	17426798	17426799	Frame_Shift_Ins	-	A	p.D64fs
LUAD	TCGA-50-5051-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1	chr11	47814337:47814498:47819330:47819436:47819529:47819626,	47819331	47819436	47819339	47819340	Frame_Shift_Ins	-	A	p.Y1094fs
LUAD	TCGA-50-5051-01	HADHA	ENST00000457468.2,ENST00000380649.3	chr2	26453059:26453162:26455027:26455147:26457084:26457223,	26455028	26455147	26455076	26455076	Frame_Shift_Del	C	-	p.L175fs
LUAD	TCGA-50-5051-01	HEATR5B	ENST00000467978.1,ENST00000233099.5,ENST00000354531.2	chr2	37268275:37268435:37276795:37276986:37280644:37280750,	37276796	37276986	37276863	37276864	Frame_Shift_Ins	-	A	p.L876fs
LUAD	TCGA-50-5051-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
LUAD	TCGA-50-5068-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631502	55631503	Frame_Shift_Ins	-	T	p.I278fs
LUAD	TCGA-50-5932-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
LUAD	TCGA-50-5933-01	PSEN2	ENST00000422240.2,ENST00000366783.3,ENST00000366782.1,ENST00000471728.1,ENST00000391872.2,ENST00000340188.4,ENST00000472139.2	chr1	227079446:227079545:227081707:227081826:227083124:227083232,	227081708	227081826	227081775	227081775	Frame_Shift_Del	G	-	p.T380fs
LUAD	TCGA-50-5941-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527385	115527386	Frame_Shift_Ins	-	A	p.Q867fs
LUAD	TCGA-50-5941-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954583	62954583	Frame_Shift_Del	G	-	p.W1241fs
LUAD	TCGA-50-5941-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000581230.1,ENST00000578804.1,ENST00000583894.1,ENST00000577922.1,ENST00000581697.1,ENST00000540698.2	chr17	62499685:62499689:62499920:62499986:62500100:62500139,	62499921	62499986	62499955	62499958	Frame_Shift_Del	TGAT	-	p.N157fs
LUAD	TCGA-50-5941-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145156965	145156966	Frame_Shift_Ins	-	A	p.L596fs
LUAD	TCGA-50-5942-01	PTPRC	ENST00000352140.3,ENST00000529828.1	chr1	198661475:198661502:198668692:198668833:198672426:198672475,198661475:198661502:198668692:198668833:198671515:198671659,198666009:198666038:198668692:198668833:198672426:198672475,	198668693	198668833	198668699	198668699	Frame_Shift_Del	C	-	p.S100fs
LUAD	TCGA-50-6593-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155260043:155260469:155261546:155261728:155262967:155263134,	155261547	155261728	155261655	155261655	Frame_Shift_Del	G	-	p.R504fs
LUAD	TCGA-50-6593-01	ARHGEF38	ENST00000265154.2,ENST00000420470.2	chr4	106510404:106510592:106534540:106534664:106552054:106552202,	106534541	106534664	106534548	106534549	Frame_Shift_Ins	-	TATC	p.R131fs
LUAD	TCGA-50-6595-01	LDHA	ENST00000542179.1,ENST00000430553.2,ENST00000375710.3,ENST00000540430.1,ENST00000538451.1,ENST00000545215.1,ENST00000541097.1,ENST00000422447.3,ENST00000379412.5	chr11	18425284:18425358:18426995:18427119:18428663:18428705,	18426996	18427119	18427087	18427087	Frame_Shift_Del	A	-	p.R268fs
LUAD	TCGA-50-6673-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555171	38555180	Frame_Shift_Del	ATCACTGAAG	-	p.K1571fs
LUAD	TCGA-50-7109-01	ZNF511	ENST00000463816.2,ENST00000361518.5	chr10	135123667:135123792:135125219:135125345:135126291:135126621,	135125220	135125345	135125341	135125342	Frame_Shift_Ins	-	AT	p.H226fs
LUAD	TCGA-53-7626-01	CARD8	ENST00000518979.1,ENST00000518622.1,ENST00000359009.4	chr19	48724986:48725112:48733694:48733954:48734033:48734263,	48733695	48733954	48733883	48733883	Frame_Shift_Del	G	-	p.R177fs
LUAD	TCGA-53-7626-01	CARD8	ENST00000447740.2,ENST00000521613.1,ENST00000520753.1,ENST00000517510.1,ENST00000522773.1,ENST00000519646.1,ENST00000519940.1,ENST00000520153.1,ENST00000521415.1,ENST00000391898.3,ENST00000520015.1,ENST00000522051.1,ENST00000357778.5	chr19	48724986:48725112:48733694:48733957:48734033:48734263,	48733695	48733957	48733883	48733883	Frame_Shift_Del	G	-	p.R177fs
LUAD	TCGA-55-1592-01	COMMD2	ENST00000491617.1,ENST00000469896.1,ENST00000483708.1	chr3	149469189:149469272:149469996:149470074:149470164:149470237,	149469997	149470074	149470067	149470068	Frame_Shift_Ins	-	A	p.A25fs
LUAD	TCGA-55-1594-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971057	21971058	Frame_Shift_Ins	-	A	p.A100fs
LUAD	TCGA-55-1594-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971057	21971058	Frame_Shift_Ins	-	A	p.A100fs
LUAD	TCGA-55-1596-01	NOTUM	ENST00000409678.3,ENST00000425009.1,ENST00000477214.1	chr17	79916210:79916269:79916810:79916871:79917346:79917442,	79916811	79916871	79916813	79916814	Frame_Shift_Ins	-	A	p.M177fs
LUAD	TCGA-55-6972-01	TOP2B	ENST00000413971.1,ENST00000264331.4,ENST00000540199.1,ENST00000435706.2,ENST00000542520.1	chr3	25651058:25651203:25654005:25654200:25656695:25656779,	25654006	25654200	25654107	25654107	Frame_Shift_Del	G	-	p.Q1229fs
LUAD	TCGA-55-6978-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099187	56099187	Frame_Shift_Del	T	-	p.K25fs
LUAD	TCGA-55-6982-01	PAQR6	ENST00000340183.5,ENST00000491107.1	chr1	156214564:156214702:156214932:156215029:156215325:156215387,156214564:156214702:156214932:156215029:156215572:156215586,	156214933	156215029	156214968	156214969	Frame_Shift_Ins	-	ATAGGCT	p.Y191fs
LUAD	TCGA-55-6982-01	PAQR6	ENST00000480773.1	chr1	156214564:156214702:156214932:156215068:156215572:156215586,	156214933	156215068	156214968	156214969	Frame_Shift_Ins	-	ATAGGCT	p.Y191fs
LUAD	TCGA-55-6985-01	TYR	ENST00000263321.5	chr11	88924369:88924586:88960990:88961138:89017940:89018122,	88960991	88961138	88961080	88961081	Frame_Shift_Ins	-	A	p.Q376fs
LUAD	TCGA-55-6985-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82836883	82836884	Frame_Shift_Ins	-	C	p.L2687fs
LUAD	TCGA-55-7281-01	VCAM1	ENST00000347652.2	chr1	101190179:101190446:101196753:101197074:101197973:101198240,	101196754	101197074	101196902	101196903	Frame_Shift_Ins	-	T	p.E451fs
LUAD	TCGA-55-7281-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436961	72436961	Frame_Shift_Del	T	-	p.V349fs
LUAD	TCGA-55-7281-01	KCTD1	ENST00000417602.1,ENST00000317932.7,ENST00000580059.1,ENST00000580191.1,ENST00000408011.3,ENST00000580638.1,ENST00000579973.1	chr18	24035855:24035865:24039583:24039889:24056478:24056623,	24039584	24039889	24039787	24039787	Frame_Shift_Del	T	-	p.R138fs
LUAD	TCGA-55-7283-01	MED25	ENST00000312865.6	chr19	50333078:50333205:50333344:50333475:50333767:50333855,	50333345	50333475	50333452	50333452	Frame_Shift_Del	C	-	p.P266fs
LUAD	TCGA-55-7576-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58830971	58830972	Frame_Shift_Ins	-	A	p.E722fs
LUAD	TCGA-55-7576-01	DARS	ENST00000264161.4,ENST00000537273.1	chr2	136678022:136678170:136680353:136680488:136681956:136682068,	136680354	136680488	136680448	136680449	Frame_Shift_Ins	-	T	p.Y239fs
LUAD	TCGA-55-7724-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527502	29527503	Frame_Shift_Del	AG	-	p.T317fs
LUAD	TCGA-55-7725-01	ARID1B	ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4,ENST00000414678.2	chr6	157454173:157454341:157469757:157470085:157488173:157488319,	157469758	157470085	157469810	157469811	Frame_Shift_Ins	-	G	p.S797fs
LUAD	TCGA-55-7728-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450110	29450110	Frame_Shift_Del	A	-	p.P174fs
LUAD	TCGA-55-7728-01	FDXR	ENST00000544854.1,ENST00000579543.1,ENST00000583917.1,ENST00000455107.2,ENST00000577509.1,ENST00000578473.1,ENST00000413947.2,ENST00000579893.1,ENST00000293195.5,ENST00000442102.2,ENST00000581530.1,ENST00000580492.1,ENST00000581969.1,ENST00000579482.1	chr17	72862330:72862366:72862567:72862690:72862905:72862998,	72862568	72862690	72862664	72862665	Frame_Shift_Del	CG	-	p.T99fs
LUAD	TCGA-55-7728-01	FDXR	ENST00000583881.1,ENST00000582944.1,ENST00000581219.1	chr17	72862330:72862366:72862567:72862666:72862905:72862998,	72862568	72862666	72862664	72862665	Frame_Shift_Del	CG	-	p.T99fs
LUAD	TCGA-55-7907-01	MPPED1	ENST00000414469.2	chr22	43808019:43808164:43830953:43831135:43870615:43870841,	43830954	43831135	43831041	43831042	Frame_Shift_Ins	-	A	p.P104fs
LUAD	TCGA-55-7911-01	FHOD3	ENST00000587493.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34273171:34273386:34289057:34289354:34297794:34297934,	34289058	34289354	34289064	34289064	Frame_Shift_Del	C	-	p.A556fs
LUAD	TCGA-55-7911-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1337284:1337488:1339572:1339675:1363333:1363518,	1339573	1339675	1339578	1339579	Frame_Shift_Ins	-	T	p.M222fs
LUAD	TCGA-55-7911-01	IGF2R	ENST00000356956.1	chr6	160461591:160461756:160464179:160464320:160465545:160465689,	160464180	160464320	160464274	160464277	Frame_Shift_Del	AGGC	-	p.E525fs
LUAD	TCGA-64-1677-01	KCNQ4	ENST00000347132.5,ENST00000506017.1	chr1	41287985:41288074:41289768:41289930:41296755:41296976,	41289769	41289930	41289922	41289923	Frame_Shift_Ins	-	G	p.P428fs
LUAD	TCGA-64-1677-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155734980	155734981	Frame_Shift_Ins	-	G	p.P1428fs
LUAD	TCGA-64-1677-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579536	7579545	Frame_Shift_Del	CAATATCGTC	-	p.D48fs
LUAD	TCGA-64-1678-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935322	36935323	Frame_Shift_Ins	-	G	p.P468fs
LUAD	TCGA-64-1678-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.P117fs
LUAD	TCGA-64-1678-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.V137fs
LUAD	TCGA-64-1678-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491185	155491186	Frame_Shift_Ins	-	T	p.N42fs
LUAD	TCGA-64-1678-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.I85fs
LUAD	TCGA-64-1678-01	GOLT1A	ENST00000308302.3	chr1	204168327:204168386:204170760:204170939:204172023:204172115,	204170761	204170939	204170835	204170836	Frame_Shift_Ins	-	C	p.G74fs
LUAD	TCGA-64-1678-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525559	75525560	Frame_Shift_Ins	-	C	p.V456fs
LUAD	TCGA-64-1678-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
LUAD	TCGA-64-1678-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.A229fs
LUAD	TCGA-64-1678-01	CPSF7	ENST00000477890.2	chr11	61183576:61183634:61183835:61183991:61187420:61187566,	61183836	61183991	61183884	61183885	Frame_Shift_Ins	-	G	p.P219fs
LUAD	TCGA-64-1678-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.G261fs
LUAD	TCGA-64-1678-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018467	134018468	Frame_Shift_Ins	-	G	p.I291fs
LUAD	TCGA-64-1678-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.P200fs
LUAD	TCGA-64-1678-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262563	25262564	Frame_Shift_Ins	-	G	p.V112fs
LUAD	TCGA-64-1678-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992275	21992276	Frame_Shift_Ins	-	G	p.P529fs
LUAD	TCGA-64-1678-01	UACA	ENST00000539319.1	chr15	70987355:70987444:70991865:70991999:71055668:71055769,	70991866	70991999	70991941	70991942	Frame_Shift_Ins	-	C	p.D46fs
LUAD	TCGA-64-1678-01	NOMO1	ENST00000287667.7	chr16	14978228:14978339:14980617:14980719:14982952:14983072,	14980618	14980719	14980694	14980695	Frame_Shift_Ins	-	C	p.F1100fs
LUAD	TCGA-64-1678-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.F623fs
LUAD	TCGA-64-1678-01	CA10	ENST00000570565.1,ENST00000340813.6,ENST00000451037.2,ENST00000285273.4,ENST00000442502.2,ENST00000575181.1,ENST00000571371.1	chr17	49824992:49825178:50008349:50008492:50149678:50149753,	50008350	50008492	50008356	50008357	Frame_Shift_Ins	-	C	p.G91fs
LUAD	TCGA-64-1678-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.Q90fs
LUAD	TCGA-64-1678-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246441	56246442	Frame_Shift_Ins	-	C	p.G522fs
LUAD	TCGA-64-1678-01	NFU1	ENST00000471185.1,ENST00000450796.2,ENST00000438184.2	chr2	69646669:69646736:69659033:69659137:69664492:69664527,	69659034	69659137	69659083	69659084	Frame_Shift_Del	CT	-	p.Q39fs
LUAD	TCGA-64-1678-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678333	73678333	Frame_Shift_Del	C	-	p.T1561fs
LUAD	TCGA-64-1678-01	IL1R2	ENST00000393414.2,ENST00000332549.3,ENST00000441002.1	chr2	102636121:102636274:102638648:102638711:102640994:102641130,	102638649	102638711	102638681	102638682	Frame_Shift_Ins	-	C	p.S241fs
LUAD	TCGA-64-1678-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099957	168099958	Frame_Shift_Ins	-	G	p.T685fs
LUAD	TCGA-64-1678-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.V81fs
LUAD	TCGA-64-1678-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.P102fs
LUAD	TCGA-64-1678-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89042786:89042944:89052212:89052365:89052954:89053069,	89052213	89052365	89052270	89052271	Frame_Shift_Ins	-	T	p.N158fs
LUAD	TCGA-64-1678-01	DCDC2	ENST00000378454.3	chr6	24178557:24178860:24205229:24205330:24278276:24278439,	24205230	24205330	24205282	24205283	Frame_Shift_Ins	-	C	p.A324fs
LUAD	TCGA-64-1678-01	MOG	ENST00000494692.1,ENST00000396701.2,ENST00000376894.4,ENST00000431798.2,ENST00000376891.4,ENST00000396704.3,ENST00000376898.3	chr6	29624992:29625074:29627095:29627443:29633928:29634037,	29627096	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.R70fs
LUAD	TCGA-64-1678-01	MOG	ENST00000376903.4	chr6	29624992:29625074:29627100:29627443:29633928:29634037,	29627101	29627443	29627216	29627217	Frame_Shift_Ins	-	C	p.R70fs
LUAD	TCGA-64-1678-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415681	86415682	Frame_Shift_Ins	-	C	p.V191fs
LUAD	TCGA-64-1678-01	ZCWPW1	ENST00000398027.2	chr7	99998716:99998959:100000138:100000199:100001316:100001408,99999511:99999664:100000138:100000199:100001316:100001408,	100000139	100000199	100000150	100000151	Frame_Shift_Ins	-	T	p.T487fs
LUAD	TCGA-64-1678-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.A101fs
LUAD	TCGA-64-1678-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.Q25fs
LUAD	TCGA-64-1679-01	ADAL	ENST00000428046.3	chr15	43635191:43635273:43638051:43638178:43641104:43641243,	43638052	43638178	43638085	43638086	Frame_Shift_Del	TT	-	p.P153fs
LUAD	TCGA-64-1679-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103030	168103030	Frame_Shift_Del	G	-	p.G1710fs
LUAD	TCGA-64-1680-01	CLSTN3	ENST00000539982.1,ENST00000534830.1,ENST00000537408.1,ENST00000266546.6,ENST00000541953.1,ENST00000545663.1,ENST00000535452.1	chr12	7285619:7285742:7286168:7286364:7287922:7287941,	7286169	7286364	7286327	7286328	Frame_Shift_Ins	-	A	p.E116fs
LUAD	TCGA-64-5774-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000520467.1	chr11	9090916:9091042:9096027:9096162:9100930:9101056,	9096028	9096162	9096031	9096031	Frame_Shift_Del	C	-	p.E172fs
LUAD	TCGA-64-5775-01	DGUOK	ENST00000348222.1,ENST00000493055.1,ENST00000489796.1	chr2	74154034:74154179:74166036:74166149:74173845:74174015,	74166037	74166149	74166144	74166145	Frame_Shift_Ins	-	A	p.Q84fs
LUAD	TCGA-64-5778-01	SPAG7	ENST00000575784.1,ENST00000573805.1,ENST00000206020.3	chr17	4863753:4863842:4864080:4864148:4871014:4871080,	4864081	4864148	4864095	4864095	Frame_Shift_Del	C	-	p.E47fs
LUAD	TCGA-64-5778-01	RFESD	ENST00000311364.4,ENST00000458310.1,ENST00000511684.1,ENST00000380005.4	chr5	94989764:94989940:94990036:94990071:94991749:94991894,	94990037	94990071	94990059	94990059	Frame_Shift_Del	G	-	p.L66fs
LUAD	TCGA-64-5778-01	HOXA3	ENST00000317201.2	chr7	27146630:27148339:27149733:27150379:27162177:27162261,	27149734	27150379	27149826	27149827	Frame_Shift_Ins	-	G	p.L145fs
LUAD	TCGA-64-5781-01	TTYH2	ENST00000526858.1,ENST00000529107.1,ENST00000269346.4,ENST00000441391.2	chr17	72248372:72248515:72249219:72249405:72249893:72249972,	72249220	72249405	72249262	72249263	Frame_Shift_Ins	-	AA	p.N434fs
LUAD	TCGA-64-5781-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179605401	179605401	Frame_Shift_Del	T	-	p.S4016fs
LUAD	TCGA-67-3771-01	ZDHHC16	ENST00000370854.3,ENST00000462924.1,ENST00000353979.3,ENST00000370842.2,ENST00000414567.1,ENST00000420089.1,ENST00000417044.1,ENST00000370846.4,ENST00000492610.1,ENST00000393760.1,ENST00000352634.4,ENST00000495735.1	chr10	99211607:99211675:99211846:99212041:99212171:99212222,	99211847	99212041	99212032	99212036	Frame_Shift_Del	CCCAC	-	p.Y143fs
LUAD	TCGA-67-3771-01	TTC12	ENST00000314756.3,ENST00000494714.1	chr11	113234549:113234649:113235556:113235782:113238908:113238980,	113235557	113235782	113235648	113235649	Frame_Shift_Ins	-	A	p.P636fs
LUAD	TCGA-67-3771-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64604504:64604701:64606658:64606791:64608058:64608241,	64606659	64606791	64606758	64606758	Frame_Shift_Del	G	-	p.L4981fs
LUAD	TCGA-67-3771-01	ROBO1	ENST00000467549.1,ENST00000495273.1	chr3	78795892:78796050:78987750:78988077:79067556:79067694,	78987751	78988077	78988050	78988050	Frame_Shift_Del	G	-	p.P67fs
LUAD	TCGA-67-3771-01	TESK1	ENST00000336395.5	chr9	35606233:35606282:35606833:35606980:35607578:35607669,35606233:35606282:35606833:35606980:35607323:35607406,	35606834	35606980	35606843	35606843	Frame_Shift_Del	G	-	p.G134fs
LUAD	TCGA-67-3772-01	CSMD2	ENST00000373381.4,ENST00000241312.4	chr1	34383694:34383902:34401360:34401555:34498194:34498307,	34401361	34401555	34401515	34401515	Frame_Shift_Del	G	-	p.P146fs
LUAD	TCGA-67-3772-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F141fs
LUAD	TCGA-67-3772-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F141fs
LUAD	TCGA-67-3772-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F141fs
LUAD	TCGA-67-3772-01	FOXM1	ENST00000361953.3,ENST00000342628.2,ENST00000359843.3,ENST00000537018.1	chr12	2975558:2975687:2977728:2977920:2981261:2981410,	2977729	2977920	2977901	2977910	Frame_Shift_Del	GGTCTCGAAG	-	p.P222fs
LUAD	TCGA-67-3772-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72152078:72152348:72165697:72165844:72169097:72169222,	72165698	72165844	72165808	72165809	Frame_Shift_Ins	-	G	p.V1162fs
LUAD	TCGA-67-3772-01	NOMO1	ENST00000287667.7	chr16	14978228:14978339:14980617:14980719:14982952:14983072,	14980618	14980719	14980694	14980695	Frame_Shift_Ins	-	C	p.F1100fs
LUAD	TCGA-67-3772-01	SERPIND1	ENST00000215727.5,ENST00000406799.1	chr22	21133783:21134489:21138259:21138533:21140291:21140436,	21138260	21138533	21138419	21138420	Frame_Shift_Ins	-	G	p.V350fs
LUAD	TCGA-67-3772-01	UBA7	ENST00000333486.3	chr3	49846408:49846592:49846822:49846897:49846974:49847158,	49846823	49846897	49846857	49846860	Frame_Shift_Del	TGTT	-	p.K709fs
LUAD	TCGA-67-3772-01	APBB2	ENST00000506352.1,ENST00000295974.8,ENST00000513140.1	chr4	40946881:40947090:41015599:41016415:41035252:41035321,40946881:40947087:41015599:41016415:41035252:41035321,	41015600	41016415	41015705	41015706	Frame_Shift_Ins	-	G	p.T243fs
LUAD	TCGA-67-6216-01	ZNF675	ENST00000359788.4,ENST00000601010.1,ENST00000599168.1,ENST00000597074.1,ENST00000596211.1,ENST00000600313.1	chr19	23844915:23845011:23845833:23845960:23869832:23869942,	23845834	23845960	23845871	23845872	Frame_Shift_Ins	-	T	p.N31fs
LUAD	TCGA-69-7760-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76112249	76112249	Frame_Shift_Del	A	-	p.P231fs
LUAD	TCGA-69-7765-01	SHISA4	ENST00000464117.1,ENST00000362011.6	chr1	201858690:201858744:201859581:201859715:201860528:201860696,	201859582	201859715	201859666	201859667	Frame_Shift_Ins	-	T	p.S110fs
LUAD	TCGA-69-7765-01	ZNF536	ENST00000355537.3,ENST00000585628.1	chr19	30934467:30936639:31025753:31025906:31038849:31039375,	31025754	31025906	31025863	31025864	Frame_Shift_Del	CC	-	p.F760fs
LUAD	TCGA-69-7980-01	STX5	ENST00000491231.1,ENST00000294179.3,ENST00000541317.1,ENST00000394690.1,ENST00000492066.1	chr11	62574890:62575100:62591637:62591759:62591930:62592037,	62591638	62591759	62591720	62591724	Frame_Shift_Del	TGTTC	-	p.Q274fs
LUAD	TCGA-69-7980-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.G88fs
LUAD	TCGA-69-7980-01	NFATC4	ENST00000554591.1,ENST00000554344.1,ENST00000554661.1,ENST00000557767.1,ENST00000556169.1,ENST00000555802.1,ENST00000422617.3,ENST00000554966.1,ENST00000554050.1,ENST00000553879.1,ENST00000554473.1,ENST00000557451.1,ENST00000555453.1,ENST00000556279.1,ENST00000539237.2,ENST00000250373.4,ENST00000554655.1,ENST00000555393.1,ENST00000424781.2,ENST00000553469.1,ENST00000553708.1,ENST00000555167.1,ENST00000556759.1,ENST00000555590.1,ENST00000413692.2	chr14	24844865:24844921:24845180:24845307:24845499:24845751,	24845181	24845307	24845275	24845275	Frame_Shift_Del	G	-	p.R675fs
LUAD	TCGA-69-7980-01	EVC2	ENST00000310917.2,ENST00000509670.1,ENST00000344938.1,ENST00000344408.5,ENST00000475313.1	chr4	5617148:5617271:5620204:5620409:5624263:5624718,	5620205	5620409	5620294	5620294	Frame_Shift_Del	C	-	p.A873fs
LUAD	TCGA-73-4658-01	DFFA	ENST00000377036.2,ENST00000377038.3	chr1	10523114:10523266:10527246:10527389:10529233:10529395,10523487:10523677:10527246:10527389:10529233:10529395,	10527247	10527389	10527291	10527291	Frame_Shift_Del	C	-	p.E133fs
LUAD	TCGA-73-4658-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15290174:15290307:15290882:15291067:15291491:15291639,	15290883	15291067	15290919	15290919	Frame_Shift_Del	C	-	p.G1097fs
LUAD	TCGA-73-4659-01	IQGAP2	ENST00000504477.1,ENST00000274364.6,ENST00000379730.3,ENST00000502745.1,ENST00000396234.3	chr5	75991278:75991491:75993811:75993972:75996900:75997038,	75993812	75993972	75993856	75993857	Frame_Shift_Ins	-	T	p.E1417fs
LUAD	TCGA-73-4662-01	PSMA6	ENST00000554620.1,ENST00000540871.1,ENST00000261479.4,ENST00000555764.1,ENST00000554541.1	chr14	35779945:35780101:35782086:35782265:35783566:35783661,	35782087	35782265	35782216	35782216	Frame_Shift_Del	A	-	p.E180fs
LUAD	TCGA-73-4662-01	PSMA6	ENST00000553809.1	chr14	35779945:35780101:35782068:35782265:35783566:35783661,	35782069	35782265	35782216	35782216	Frame_Shift_Del	A	-	p.E180fs
LUAD	TCGA-73-4675-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854284	40854284	Frame_Shift_Del	C	-	p.C37fs
LUAD	TCGA-73-7498-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.P132fs
LUAD	TCGA-73-7498-01	STAT3	ENST00000585517.1,ENST00000264657.5,ENST00000404395.3,ENST00000389272.3,ENST00000588969.1	chr17	40481427:40481475:40481571:40481665:40481764:40481794,	40481572	40481665	40481573	40481573	Frame_Shift_Del	A	-	p.L411fs
LUAD	TCGA-75-5122-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764945	13764946	Frame_Shift_Ins	-	A	p.A234fs
LUAD	TCGA-75-5126-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661474	230661475	Frame_Shift_Ins	-	A	p.L1141fs
LUAD	TCGA-75-5146-01	LRIG1	ENST00000383703.3,ENST00000273261.3,ENST00000497721.1,ENST00000498287.1	chr3	66463349:66463438:66465343:66465487:66467552:66467690,	66465344	66465487	66465421	66465422	Frame_Shift_Ins	-	A	p.L190fs
LUAD	TCGA-75-6211-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579481	7579482	Frame_Shift_Ins	-	C	p.A69fs
LUAD	TCGA-75-7027-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449548	85449549	Frame_Shift_Ins	-	A	p.A326fs
LUAD	TCGA-75-7027-01	EYA2	ENST00000327619.5,ENST00000497062.2,ENST00000317304.6	chr20	45801354:45801515:45808445:45808560:45809462:45809584,	45808446	45808560	45808534	45808535	Frame_Shift_Ins	-	A	p.L429fs
LUAD	TCGA-75-7031-01	CD200	ENST00000473539.1	chr3	112052024:112052071:112054789:112054864:112059748:112059830,	112054790	112054864	112054808	112054808	Frame_Shift_Del	G	-	p.G11fs
LUAD	TCGA-75-7031-01	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437372	122437373	Frame_Shift_Ins	-	A	p.T1458fs
LUAD	TCGA-78-7143-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951168	48951168	Frame_Shift_Del	C	-	p.Q444fs
LUAD	TCGA-78-7145-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255576	156255576	Frame_Shift_Del	G	-	p.G187fs
LUAD	TCGA-78-7145-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255576	156255576	Frame_Shift_Del	G	-	p.G187fs
LUAD	TCGA-78-7145-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255576	156255576	Frame_Shift_Del	G	-	p.G187fs
LUAD	TCGA-78-7145-01	TP53AIP1	ENST00000527504.1	chr11	128806432:128806544:128806656:128807729:128812688:128812822,	128806657	128807729	128807581	128807582	Frame_Shift_Del	GT	-	p.T44fs
LUAD	TCGA-78-7145-01	TP53AIP1	ENST00000531399.1	chr11	128806432:128806544:128807572:128807789:128812688:128812822,	128807573	128807789	128807581	128807582	Frame_Shift_Del	GT	-	p.T44fs
LUAD	TCGA-78-7147-01	ABHD12B	ENST00000557345.1,ENST00000395752.1,ENST00000382029.3	chr14	51338880:51338996:51345462:51345565:51347169:51347289,	51345463	51345565	51345565	51345565	Frame_Shift_Del	G	-	p.W112fs
LUAD	TCGA-78-7147-01	BMPER	ENST00000297161.2,ENST00000426693.1	chr7	33976900:33977000:34006090:34006173:34009940:34010031,	34006091	34006173	34006128	34006129	Frame_Shift_Ins	-	A	p.F119fs
LUAD	TCGA-78-7149-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000454583.2,ENST00000243326.5,ENST00000453091.2	chr2	152326224:152326378:152330477:152330586:152331370:152331733,	152330478	152330586	152330523	152330524	Frame_Shift_Ins	-	A	p.E2381fs
LUAD	TCGA-78-7152-01	SLC26A7	ENST00000522181.1	chr8	92330443:92330608:92346522:92346675:92352631:92352779,	92346523	92346675	92346585	92346585	Frame_Shift_Del	G	-	p.L235fs
LUAD	TCGA-78-7154-01	CEP68	ENST00000377990.2,ENST00000546106.1,ENST00000260569.4	chr2	65283598:65283662:65296532:65296935:65298587:65298750,	65296533	65296935	65296785	65296786	Frame_Shift_Ins	-	A	p.G69fs
LUAD	TCGA-78-7155-01	TTF2	ENST00000369466.4	chr1	117624452:117624569:117626639:117626790:117629038:117629144,	117626640	117626790	117626641	117626642	Frame_Shift_Del	CT	-	p.D635fs
LUAD	TCGA-78-7155-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000559711.1,ENST00000559257.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000539772.1,ENST00000538686.2,ENST00000561326.1,ENST00000559192.1,ENST00000540797.1	chr15	63855093:63855207:63862631:63862778:63866244:63866351,	63862632	63862778	63862705	63862705	Frame_Shift_Del	G	-	p.G279fs
LUAD	TCGA-78-7155-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51160242	51160242	Frame_Shift_Del	C	-	p.G1343fs
LUAD	TCGA-78-7155-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005349	150005349	Frame_Shift_Del	T	-	p.P292fs
LUAD	TCGA-78-7159-01	ITGA8	ENST00000378076.3	chr10	15702877:15702921:15713601:15713646:15714622:15714748,	15713602	15713646	15713635	15713636	Frame_Shift_Ins	-	A	p.V271fs
LUAD	TCGA-78-7159-01	PCDH7	ENST00000543491.1	chr4	30726062:30726218:30921774:30921991:31144094:31144353,	30921775	30921991	30921902	30921903	Frame_Shift_Ins	-	A	p.P1101fs
LUAD	TCGA-78-7159-01	PCDH7	ENST00000511884.2	chr4	30726062:30726218:30921774:30921967:31144094:31144353,	30921775	30921967	30921902	30921903	Frame_Shift_Ins	-	A	p.P1101fs
LUAD	TCGA-78-7162-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789322	150789326	Frame_Shift_Del	GTTGG	-	p.T580fs
LUAD	TCGA-78-7162-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775275	23775275	Frame_Shift_Del	A	-	p.E201fs
LUAD	TCGA-78-7162-01	GRB10	ENST00000401949.1,ENST00000402578.1,ENST00000439599.1,ENST00000402497.1,ENST00000335866.3,ENST00000398810.2,ENST00000398812.2,ENST00000403097.1,ENST00000407526.1,ENST00000406641.1,ENST00000357271.5	chr7	50694518:50694675:50737418:50737560:50742132:50742355,	50737419	50737560	50737429	50737430	Frame_Shift_Ins	-	C	p.A165fs
LUAD	TCGA-78-7166-01	DTWD2	ENST00000510708.1,ENST00000304058.4	chr5	118175973:118176782:118183784:118183913:118264231:118264424,	118183785	118183913	118183864	118183864	Frame_Shift_Del	G	-	p.P216fs
LUAD	TCGA-78-7535-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33237139	33237139	Frame_Shift_Del	T	-	p.F728fs
LUAD	TCGA-78-7535-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696953	17696954	Frame_Shift_Ins	-	A	p.Q231fs
LUAD	TCGA-78-7536-01	ZAN	ENST00000427578.1	chr7	100390026:100390166:100391441:100391880:100392817:100392958,	100391442	100391880	100391834	100391834	Frame_Shift_Del	G	-	p.A2693fs
LUAD	TCGA-78-7536-01	ZAN	ENST00000443370.1,ENST00000538115.1,ENST00000546213.1	chr7	100390026:100390166:100391741:100391880:100392817:100392958,	100391742	100391880	100391834	100391834	Frame_Shift_Del	G	-	p.A2693fs
LUAD	TCGA-78-7536-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000544260.1,ENST00000521772.1,ENST00000381869.3,ENST00000262102.6,ENST00000518713.1,ENST00000381861.3,ENST00000517413.1	chr8	17512072:17512175:17513371:17513574:17532694:17532761,	17513372	17513574	17513510	17513510	Frame_Shift_Del	T	-	p.E990fs
LUAD	TCGA-78-7536-01	STRBP	ENST00000348403.5,ENST00000447404.2,ENST00000360998.3	chr9	125932180:125932325:125935955:125936121:125941285:125941506,	125935956	125936121	125935997	125935997	Frame_Shift_Del	G	-	p.L117fs
LUAD	TCGA-78-7536-01	STRBP	ENST00000407982.2	chr9	125932180:125932325:125935955:125936113:125941285:125941506,	125935956	125936113	125935997	125935997	Frame_Shift_Del	G	-	p.L117fs
LUAD	TCGA-78-7539-01	RGR	ENST00000483660.1,ENST00000359452.4,ENST00000483771.1	chr10	86014081:86014199:86017648:86017762:86018263:86018338,	86017649	86017762	86017689	86017689	Frame_Shift_Del	G	-	p.W224fs
LUAD	TCGA-78-7542-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82837339	82837340	Frame_Shift_Del	AC	-	p.G2839fs
LUAD	TCGA-78-7633-01	ICK	ENST00000350082.5,ENST00000356971.3	chr6	52880880:52881048:52883127:52883299:52884024:52884157,	52883128	52883299	52883129	52883129	Frame_Shift_Del	T	-	p.K221fs
LUAD	TCGA-86-6851-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152289590:152289742:152291976:152292094:152293340:152293400,	152291977	152292094	152292047	152292048	Frame_Shift_Ins	-	T	p.H383fs
LUAD	TCGA-86-6851-01	ADAMTS12	ENST00000504830.1,ENST00000352040.3	chr5	33549311:33549488:33561131:33561284:33576158:33577265,	33561132	33561284	33561259	33561260	Frame_Shift_Ins	-	T	p.A1333fs
LUAD	TCGA-86-7714-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000531691.1,ENST00000525566.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000526266.1,ENST00000531689.1,ENST00000354940.6,ENST00000527688.1,ENST00000526580.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1,ENST00000527335.1	chr12	104705067:104705190:104707022:104707095:104709554:104709604,	104707023	104707095	104707093	104707093	Frame_Shift_Del	G	-	p.W203fs
LUAD	TCGA-86-7714-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47087976:47088111:47098310:47098980:47103652:47103836,	47098311	47098980	47098880	47098881	Frame_Shift_Ins	-	T	p.Q2131fs
LUAD	TCGA-91-6828-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210560407	210560408	Frame_Shift_Ins	-	T	p.V1171fs
LUAD	TCGA-91-6828-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210560407	210560408	Frame_Shift_Ins	-	T	p.V1171fs
LUAD	TCGA-91-6829-01	DOCK7	ENST00000404627.2,ENST00000340370.5	chr1	63119654:63119830:63128695:63128801:63153897:63153953,	63128696	63128801	63128718	63128719	Frame_Shift_Ins	-	A	p.G41fs
LUAD	TCGA-91-6829-01	PUS7	ENST00000356362.2,ENST00000469408.1	chr7	105108783:105108910:105111134:105111295:105112578:105112635,	105111135	105111295	105111238	105111239	Frame_Shift_Ins	-	A	p.T432fs
LUAD	TCGA-91-6829-01	PUS7	ENST00000481939.1	chr7	105108783:105108910:105111207:105111295:105112578:105112635,	105111208	105111295	105111238	105111239	Frame_Shift_Ins	-	A	p.T432fs
LUAD	TCGA-91-6847-01	LPP	ENST00000414139.1,ENST00000312675.4	chr3	188059450:188059507:188123899:188124101:188202379:188202383,187943192:187943315:188123899:188124101:188202379:188202383,	188123900	188124101	188124020	188124024	Frame_Shift_Del	ACACA	-	p.T38fs
LUAD	TCGA-91-6849-01	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081695	144081696	Frame_Shift_Ins	-	A	p.I193fs
LUAD	TCGA-93-7347-01	DHX32	ENST00000284690.3	chr10	127542529:127542772:127548171:127548544:127555558:127555752,	127548172	127548544	127548457	127548461	Frame_Shift_Del	ATGAA	-	p.I187fs
LUAD	TCGA-93-7347-01	HSF4	ENST00000521314.1,ENST00000264009.8,ENST00000521374.1	chr16	67201415:67201502:67201622:67201850:67202733:67202786,	67201623	67201850	67201666	67201666	Frame_Shift_Del	G	-	p.G300fs
LUAD	TCGA-95-7039-01	CATSPER1	ENST00000312106.5	chr11	65787787:65787860:65788034:65788098:65788281:65788425,	65788035	65788098	65788097	65788098	Frame_Shift_Ins	-	A	p.G643fs
LUAD	TCGA-95-7039-01	EVL	ENST00000544450.2	chr14	100531781:100531848:100551023:100551192:100563817:100563995,100485912:100486024:100551023:100551192:100563817:100563995,	100551024	100551192	100551124	100551125	Frame_Shift_Del	AT	-	p.I36fs
LUAD	TCGA-95-7039-01	HYDIN	ENST00000393567.2	chr16	70975538:70975722:70977714:70977852:70986323:70986538,	70977715	70977852	70977826	70977826	Frame_Shift_Del	C	-	p.G2185fs
LUAD	TCGA-95-7039-01	EPB41L1	ENST00000373950.2,ENST00000202028.5,ENST00000441639.1,ENST00000373941.1,ENST00000338074.2,ENST00000373946.3,ENST00000432603.1	chr20	34807682:34807766:34809785:34809866:34810199:34810316,	34809786	34809866	34809839	34809840	Frame_Shift_Ins	-	G	p.T831fs
LUAD	TCGA-95-7039-01	ROPN1L	ENST00000510520.1	chr5	10450063:10450225:10461295:10461471:10471921:10472141,	10461296	10461471	10461430	10461431	Frame_Shift_Ins	-	T	p.P184fs
LUAD	TCGA-95-7043-01	STIM1	ENST00000532610.1,ENST00000527651.1,ENST00000532919.1,ENST00000532990.1,ENST00000530554.1,ENST00000525403.1,ENST00000528656.1,ENST00000525055.1,ENST00000300737.4	chr11	3988781:3988912:4045102:4045217:4076755:4076795,	4045103	4045217	4045158	4045159	Frame_Shift_Ins	-	T	p.H109fs
LUAD	TCGA-95-7043-01	SOX5	ENST00000546136.1,ENST00000537393.1,ENST00000309359.1,ENST00000367206.3,ENST00000545921.1,ENST00000451604.2	chr12	23716254:23716337:23728594:23728772:23757320:23757467,	23728595	23728772	23728652	23728652	Frame_Shift_Del	G	-	p.L429fs
LUAD	TCGA-95-7043-01	DHRS12	ENST00000444610.2,ENST00000490949.1,ENST00000280056.2,ENST00000218981.1	chr13	52351195:52351257:52364146:52364228:52365300:52365393,	52364147	52364228	52364174	52364174	Frame_Shift_Del	C	-	p.E141fs
LUAD	TCGA-95-7043-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829861	72829862	Frame_Shift_Ins	-	C	p.G2240fs
LUAD	TCGA-95-7043-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158112	50158113	Frame_Shift_Ins	-	G	p.R1201fs
LUAD	TCGA-95-7043-01	TMLHE	ENST00000369439.4,ENST00000334398.3	chrX	154743646:154743926:154754116:154754293:154774756:154774938,	154754117	154754293	154754199	154754200	Frame_Shift_Ins	-	T	p.Q92fs
LUAD	TCGA-95-7567-01	PLK3	ENST00000465443.1,ENST00000372201.4	chr1	45266511:45266619:45266707:45266824:45267293:45267423,	45266708	45266824	45266760	45266761	Frame_Shift_Ins	-	T	p.R124fs
LUAD	TCGA-95-7567-01	CDC123	ENST00000281141.4,ENST00000498747.1,ENST00000378900.2	chr10	12288147:12288276:12291579:12291717:12292309:12292358,	12291580	12291717	12291634	12291635	Frame_Shift_Ins	-	A	p.Y301fs
LUAD	TCGA-95-7567-01	CUTC	ENST00000370476.5,ENST00000493385.1,ENST00000471520.1,ENST00000370472.4	chr10	101496002:101496074:101499466:101499526:101502909:101503080,	101499467	101499526	101499503	101499504	Frame_Shift_Ins	-	G	p.E57fs
LUAD	TCGA-95-7567-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913973	129913974	Frame_Shift_Ins	-	T	p.N233fs
LUAD	TCGA-95-7567-01	AMPD3	ENST00000529834.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000444303.2	chr11	10503609:10503772:10506366:10506586:10508781:10508911,	10506367	10506586	10506451	10506452	Frame_Shift_Ins	-	G	p.Q225fs
LUAD	TCGA-95-7567-01	PTPRJ	ENST00000440289.2,ENST00000526550.1,ENST00000418331.2	chr11	48131609:48131628:48134298:48134535:48142554:48142651,	48134299	48134535	48134531	48134532	Frame_Shift_Del	CA	-	p.S116fs
LUAD	TCGA-95-7567-01	C2CD3	ENST00000313663.7,ENST00000415191.2,ENST00000334126.7	chr11	73825428:73825638:73829272:73829427:73834032:73834180,	73829273	73829427	73829363	73829364	Frame_Shift_Ins	-	T	p.I477fs
LUAD	TCGA-95-7567-01	CHRDL2	ENST00000525413.1,ENST00000376324.3,ENST00000263671.5,ENST00000376332.3,ENST00000534276.1,ENST00000534159.1,ENST00000528471.1	chr11	74413845:74414012:74414349:74414544:74415530:74415680,	74414350	74414544	74414386	74414387	Frame_Shift_Ins	-	G	p.P303fs
LUAD	TCGA-95-7567-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874010	104874011	Frame_Shift_Ins	-	T	p.N178fs
LUAD	TCGA-95-7567-01	ITGAD	ENST00000389202.2,ENST00000444228.2	chr16	31408916:31408987:31409115:31409230:31413435:31413566,	31409116	31409230	31409145	31409146	Frame_Shift_Ins	-	G	p.C114fs
LUAD	TCGA-95-7567-01	BCAM	ENST00000270233.6,ENST00000589651.1	chr19	45321997:45322139:45322312:45322449:45322602:45322747,	45322313	45322449	45322439	45322440	Frame_Shift_Ins	-	G	p.L488fs
LUAD	TCGA-95-7567-01	SSB	ENST00000474273.1,ENST00000260956.4,ENST00000409333.1	chr2	170663480:170663581:170664991:170665063:170665369:170665412,	170664992	170665063	170665007	170665008	Frame_Shift_Ins	-	A	p.A190fs
LUAD	TCGA-95-7567-01	OLA1	ENST00000428402.2	chr2	175094071:175094179:175111442:175111543:175113179:175113203,	175111443	175111543	175111470	175111471	Frame_Shift_Ins	-	T	p.I25fs
LUAD	TCGA-95-7567-01	ARFGEF2	ENST00000371917.4	chr20	47585683:47585814:47587656:47587891:47588862:47588962,	47587657	47587891	47587876	47587877	Frame_Shift_Ins	-	A	p.L470fs
LUAD	TCGA-95-7567-01	NSUN2	ENST00000264670.6,ENST00000504374.1,ENST00000539938.1,ENST00000505892.1,ENST00000506139.1	chr5	6606932:6607025:6607312:6607497:6609938:6610035,	6607313	6607497	6607459	6607460	Frame_Shift_Del	CT	-	p.Q454fs
LUAD	TCGA-95-7567-01	DEPDC1B	ENST00000453022.2	chr5	59943224:59943360:59982788:59983054:59995872:59995961,	59982789	59983054	59982868	59982869	Frame_Shift_Ins	-	T	p.K78fs
LUAD	TCGA-95-7567-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
LUAD	TCGA-95-7567-01	KIAA0319	ENST00000543707.1	chr6	24596100:24596846:24601276:24601436:24645963:24646383,24596664:24596846:24601276:24601436:24645854:24646249,	24601277	24601436	24601319	24601320	Frame_Shift_Ins	-	G	p.P4fs
LUAD	TCGA-95-7567-01	NSMCE2	ENST00000517315.1,ENST00000517532.1,ENST00000522563.1,ENST00000287437.3	chr8	126163412:126163519:126194344:126194498:126369460:126369561,	126194345	126194498	126194363	126194364	Frame_Shift_Ins	-	A	p.E95fs
LUAD	TCGA-95-7567-01	PLIN2	ENST00000276914.2	chr9	19118318:19118453:19119647:19119829:19120877:19121163,	19119648	19119829	19119812	19119813	Frame_Shift_Ins	-	T	p.K204fs
LUAD	TCGA-95-7567-01	CCNB3	ENST00000376042.1,ENST00000276014.7	chrX	50037862:50037993:50051504:50054496:50055536:50055632,	50051505	50054496	50051702	50051703	Frame_Shift_Ins	-	A	p.L178fs
LUAD	TCGA-95-7947-01	CUEDC2	ENST00000369937.4,ENST00000477994.1	chr10	104184405:104184549:104184871:104184955:104192282:104192325,	104184872	104184955	104184914	104184915	Frame_Shift_Ins	-	G	p.L11fs
LUAD	TCGA-95-7947-01	IL3RA	ENST00000331035.4	chrX	1464208:1464327:1467323:1467438:1470992:1471125,	1467324	1467438	1467367	1467376	Frame_Shift_Del	GTGAAGTGAC	-	p.C76fs
LUAD	TCGA-97-7553-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000584328.1,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29665042:29665157:29665721:29665823:29667522:29667663,	29665722	29665823	29665755	29665756	Frame_Shift_Ins	-	A	p.Y2285fs
LUAD	TCGA-97-7553-01	TRIM25	ENST00000572021.1,ENST00000570749.1,ENST00000570473.1,ENST00000537230.1,ENST00000316881.4	chr17	54976475:54976541:54978779:54978939:54981615:54981704,	54978780	54978939	54978862	54978862	Frame_Shift_Del	T	-	p.K335fs
LUAD	TCGA-97-7553-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763924	74763924	Frame_Shift_Del	C	-	p.G275fs
LUAD	TCGA-97-7553-01	TEKT4	ENST00000468063.1,ENST00000295201.4	chr2	95539264:95539335:95539709:95539853:95540520:95540743,	95539710	95539853	95539829	95539830	Frame_Shift_Ins	-	G	p.P230fs
LUAD	TCGA-97-7553-01	CTCFL	ENST00000429804.3,ENST00000609232.1,ENST00000243914.3	chr20	56098123:56098334:56098718:56099272:56100083:56100163,	56098719	56099272	56099187	56099187	Frame_Shift_Del	T	-	p.K25fs
LUAD	TCGA-97-7553-01	VDAC1	ENST00000395047.2,ENST00000395044.3,ENST00000265333.3	chr5	133311561:133311712:133316419:133316647:133326545:133326598,	133316420	133316647	133316639	133316639	Frame_Shift_Del	T	-	p.N111fs
LUAD	TCGA-97-7554-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1,ENST00000599719.1	chr19	41787067:41787180:41798149:41798416:41800242:41800293,	41798150	41798416	41798236	41798237	Frame_Shift_Ins	-	T	p.A362fs
LUAD	TCGA-97-7554-01	CTNNA2	ENST00000496558.1	chr2	79740159:79740333:79878677:79878784:79971512:79971609,	79878678	79878784	79878782	79878783	Frame_Shift_Ins	-	A	p.Q34fs
LUAD	TCGA-97-7937-01	ANKRD45	ENST00000333279.2	chr1	173596203:173596298:173615984:173616152:173628229:173628572,	173615985	173616152	173616018	173616019	Frame_Shift_Del	GA	-	p.S154fs
LUAD	TCGA-97-7937-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89408219:89408330:89410316:89410487:89414162:89414306,	89410317	89410487	89410360	89410363	Frame_Shift_Del	AAGA	-	p.E669fs
LUAD	TCGA-97-7938-01	C7orf57	ENST00000430738.1,ENST00000461741.1	chr7	48075126:48075227:48075889:48075960:48080930:48081104,	48075890	48075960	48075920	48075921	Frame_Shift_Ins	-	A	p.S5fs
LUAD	TCGA-97-7938-01	C7orf57	ENST00000348904.3,ENST00000539619.1	chr7	48075126:48075227:48075804:48075960:48080930:48081104,	48075805	48075960	48075920	48075921	Frame_Shift_Ins	-	A	p.S5fs
LUAD	TCGA-99-7458-01	PFKL	ENST00000466134.1,ENST00000397961.2,ENST00000349048.4,ENST00000403390.1,ENST00000491298.1,ENST00000496824.1	chr21	45726563:45726637:45730888:45730966:45731987:45732120,	45730889	45730966	45730904	45730904	Frame_Shift_Del	G	-	p.V59fs
LUSC	TCGA-18-3406-01	A1BG	ENST00000595014.1,ENST00000263100.3	chr19	58858718:58859006:58861735:58862017:58862756:58863053,	58861736	58862017	58861774	58861774	Frame_Shift_Del	C	-	p.G385fs
LUSC	TCGA-18-3407-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578214	Frame_Shift_Del	AA	-	p.F212fs
LUSC	TCGA-18-3409-01	CTPS1	ENST00000463285.1,ENST00000541520.1,ENST00000486889.1,ENST00000372621.4,ENST00000372616.1	chr1	41463065:41463198:41466700:41466789:41467831:41467908,	41466701	41466789	41466737	41466737	Frame_Shift_Del	C	-	p.Q348fs
LUSC	TCGA-18-3409-01	STAT2	ENST00000314128.4,ENST00000556539.1,ENST00000557235.1	chr12	56742312:56742407:56742535:56742588:56742707:56742843,	56742536	56742588	56742562	56742563	Frame_Shift_Ins	-	T	p.P534fs
LUSC	TCGA-18-3409-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578200	7578221	Frame_Shift_Del	CCACACTATGTCGAAAAGTGTT	-	p.N210fs
LUSC	TCGA-18-3409-01	AP1M2	ENST00000250244.6,ENST00000592285.1,ENST00000590923.1	chr19	10685092:10685168:10685579:10685705:10687873:10687907,	10685580	10685705	10685628	10685628	Frame_Shift_Del	G	-	p.P377fs
LUSC	TCGA-18-3410-01	PIP4K2C	ENST00000354947.5,ENST00000551772.1,ENST00000550095.1,ENST00000550360.1,ENST00000540759.2	chr12	57987807:57987905:57988908:57989005:57992847:57992877,57987807:57987905:57988908:57989005:57989670:57989814,	57988909	57989005	57988919	57988919	Frame_Shift_Del	C	-	p.P95fs
LUSC	TCGA-18-3411-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971019	21971019	Frame_Shift_Del	C	-	p.L113fs
LUSC	TCGA-18-3411-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971019	21971019	Frame_Shift_Del	C	-	p.L113fs
LUSC	TCGA-18-3411-01	ANXA11	ENST00000372231.3,ENST00000535999.1,ENST00000438331.1,ENST00000422982.3,ENST00000360615.4,ENST00000537102.1,ENST00000265447.4	chr10	81926981:81927069:81928724:81929114:81930555:81930671,	81928725	81929114	81928846	81928847	Frame_Shift_Ins	-	G	p.Q247fs
LUSC	TCGA-18-3414-01	IQGAP1	ENST00000560738.1,ENST00000268182.5	chr15	91009500:91009668:91010681:91010824:91016071:91016242,	91010682	91010824	91010776	91010776	Frame_Shift_Del	T	-	p.P710fs
LUSC	TCGA-18-3419-01	MAPK15	ENST00000484654.1	chr8	144801512:144801652:144802399:144803010:144803400:144803526,	144802400	144803010	144802438	144802438	Frame_Shift_Del	C	-	p.L254fs
LUSC	TCGA-18-3419-01	MAPK15	ENST00000338033.4	chr8	144801512:144801652:144802399:144802457:144802872:144803010,	144802400	144802457	144802438	144802438	Frame_Shift_Del	C	-	p.L254fs
LUSC	TCGA-18-3419-01	IRX6	ENST00000290552.7	chr16	55361207:55361317:55361497:55361805:55362611:55363223,	55361498	55361805	55361548	55361548	Frame_Shift_Del	G	-	p.R155fs
LUSC	TCGA-18-4086-01	MFSD11	ENST00000585692.1,ENST00000355954.3,ENST00000588460.1,ENST00000593181.1,ENST00000590514.1,ENST00000336509.4,ENST00000585865.1,ENST00000586622.1	chr17	74765827:74765953:74771078:74771253:74772487:74772623,	74771079	74771253	74771143	74771143	Frame_Shift_Del	G	-	p.L313fs
LUSC	TCGA-18-4086-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3	chr18	9577061:9577189:9583114:9583273:9584512:9584578,	9583115	9583273	9583268	9583268	Frame_Shift_Del	G	-	p.P255fs
LUSC	TCGA-18-5592-01	COL25A1	ENST00000399127.1	chr4	109780811:109780889:109782082:109782127:109784474:109784543,	109782083	109782127	109782124	109782124	Frame_Shift_Del	C	-	p.D401fs
LUSC	TCGA-18-5592-01	GCNT2	ENST00000495262.1	chr6	10527706:10527893:10528863:10530069:10621583:10621655,	10528864	10530069	10529727	10529727	Frame_Shift_Del	T	-	p.F195fs
LUSC	TCGA-18-5592-01	RACGAP1	ENST00000547905.1,ENST00000454520.2,ENST00000549342.1,ENST00000551016.1,ENST00000434422.1,ENST00000312377.5,ENST00000427314.2	chr12	50386332:50386438:50387913:50388112:50388196:50388292,	50387914	50388112	50388016	50388016	Frame_Shift_Del	C	-	p.D413fs
LUSC	TCGA-18-5592-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15302234:15302468:15302555:15302678:15302770:15303109,	15302556	15302678	15302611	15302611	Frame_Shift_Del	C	-	p.G249fs
LUSC	TCGA-18-5592-01	SAGE1	ENST00000370709.3,ENST00000324447.3,ENST00000535938.1	chrX	134989471:134989612:134989859:134990000:134990247:134990388,	134989860	134990000	134989943	134989943	Frame_Shift_Del	C	-	p.P368fs
LUSC	TCGA-21-1078-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056345	27056346	Frame_Shift_Ins	-	AC	p.Y447fs
LUSC	TCGA-21-1078-01	SPTBN4	ENST00000352632.3,ENST00000392025.1,ENST00000598249.1,ENST00000597389.1	chr19	41075562:41075632:41076341:41076634:41077924:41078098,	41076342	41076634	41076449	41076450	Frame_Shift_Ins	-	A	p.P2378fs
LUSC	TCGA-21-1078-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51159932	51159933	Frame_Shift_Ins	-	G	p.L1240fs
LUSC	TCGA-21-1081-01	MAMDC4	ENST00000317446.2,ENST00000485732.1,ENST00000445819.1	chr9	139753170:139753305:139753456:139753584:139753660:139753769,	139753457	139753584	139753544	139753545	Frame_Shift_Ins	-	G	p.L1015fs
LUSC	TCGA-21-1081-01	MAMDC4	ENST00000479475.1	chr9	139752851:139752998:139753170:139753584:139753660:139753769,	139753171	139753584	139753544	139753545	Frame_Shift_Ins	-	G	p.L1015fs
LUSC	TCGA-21-5786-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790758	133790758	Frame_Shift_Del	C	-	p.R954fs
LUSC	TCGA-21-5786-01	ZNF519	ENST00000590202.1	chr18	14084875:14085075:14124348:14124475:14132273:14132427,14105992:14106408:14124348:14124475:14132273:14132427,	14124349	14124475	14124370	14124371	Frame_Shift_Del	AG	-	p.N36fs
LUSC	TCGA-21-5787-01	DAGLA	ENST00000257215.5	chr11	61487583:61487722:61488150:61488362:61490330:61490432,	61488151	61488362	61488164	61488165	Frame_Shift_Ins	-	C	p.S37fs
LUSC	TCGA-21-5787-01	DAGLA	ENST00000540717.1	chr11	61487583:61487722:61488150:61488339:61490330:61490432,	61488151	61488339	61488164	61488165	Frame_Shift_Ins	-	C	p.S37fs
LUSC	TCGA-21-5787-01	LPAR2	ENST00000407877.3	chr19	19734477:19735378:19737351:19738093:19738900:19738976,	19737352	19738093	19737866	19737867	Frame_Shift_Del	CG	-	p.A76fs
LUSC	TCGA-22-4593-01	TMEM63A	ENST00000366835.3	chr1	226046895:226047049:226048559:226048697:226049917:226050051,	226048560	226048697	226048639	226048639	Frame_Shift_Del	G	-	p.Q382fs
LUSC	TCGA-22-4593-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579527	7579542	Frame_Shift_Del	ACCATTGTTCAATATC	-	p.D49fs
LUSC	TCGA-22-4599-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56203118	56203118	Frame_Shift_Del	C	-	p.G1434fs
LUSC	TCGA-22-4599-01	EEF2	ENST00000309311.6	chr19	3979326:3979434:3979805:3980064:3980511:3980707,	3979806	3980064	3980012	3980013	Frame_Shift_Del	CA	-	p.C466fs
LUSC	TCGA-22-4607-01	RB1	ENST00000267163.4	chr13	48877910:48878185:48881415:48881542:48916734:48916850,	48881416	48881542	48881488	48881489	Frame_Shift_Ins	-	AG	p.V70fs
LUSC	TCGA-22-4613-01	MAP4	ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47908735:47908828:47910703:47910817:47912302:47912595,	47910704	47910817	47910733	47910733	Frame_Shift_Del	C	-	p.A982fs
LUSC	TCGA-22-5473-01	ESR1	ENST00000206249.3,ENST00000440973.1,ENST00000443427.1,ENST00000338799.5,ENST00000427531.2	chr6	152201791:152201906:152265307:152265643:152332790:152332929,	152265308	152265643	152265522	152265522	Frame_Shift_Del	G	-	p.P327fs
LUSC	TCGA-22-5473-01	MAPT	ENST00000344290.5,ENST00000262410.5,ENST00000415613.2,ENST00000571987.1	chr17	44055746:44055806:44060543:44061296:44064405:44064461,	44060544	44061296	44060961	44060961	Frame_Shift_Del	C	-	p.A264fs
LUSC	TCGA-22-5473-01	OVOL2	ENST00000483661.1,ENST00000278780.6	chr20	18005242:18005596:18022177:18022367:18037300:18037521,	18022178	18022367	18022309	18022309	Frame_Shift_Del	C	-	p.G127fs
LUSC	TCGA-22-5478-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135782687:135782757:135785957:135786079:135786388:135786500,	135785958	135786079	135785964	135785964	Frame_Shift_Del	G	-	p.P419fs
LUSC	TCGA-22-5478-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4,ENST00000570331.1	chr16	20347967:20348049:20348612:20348775:20352412:20352454,	20348613	20348775	20348632	20348633	Frame_Shift_Ins	-	T	p.M607fs
LUSC	TCGA-22-5480-01	ST8SIA6	ENST00000377602.4	chr10	17363188:17363345:17365063:17365156:17369012:17369108,	17365064	17365156	17365142	17365142	Frame_Shift_Del	G	-	p.P217fs
LUSC	TCGA-22-5480-01	SLC6A4	ENST00000401766.2,ENST00000394821.2,ENST00000261707.3	chr17	28545135:28545355:28545814:28545949:28548633:28549099,	28545815	28545949	28545947	28545947	Frame_Shift_Del	C	-	p.A116fs
LUSC	TCGA-22-5491-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108043724	108043724	Frame_Shift_Del	A	-	p.S663fs
LUSC	TCGA-33-4532-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10600323:10600529:10602252:10602396,10599867:10600044:10600323:10600529:10602252:10602396,	10600324	10600529	10600448	10600449	Frame_Shift_Ins	-	T	p.N469fs
LUSC	TCGA-33-4533-01	KLHL32	ENST00000369261.4	chr6	97489367:97489475:97512503:97512602:97533001:97533217,	97512504	97512602	97512545	97512545	Frame_Shift_Del	G	-	p.A118fs
LUSC	TCGA-33-4533-01	MBD1	ENST00000349085.2,ENST00000592060.1,ENST00000398488.1,ENST00000587605.1	chr18	47799217:47799325:47799933:47800233:47800555:47800720,47799217:47799325:47799933:47800233:47801346:47801415,	47799934	47800233	47799999	47799999	Frame_Shift_Del	C	-	p.E461fs
LUSC	TCGA-33-4538-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971114	21971114	Frame_Shift_Del	C	-	p.V82fs
LUSC	TCGA-33-4538-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971114	21971114	Frame_Shift_Del	C	-	p.V82fs
LUSC	TCGA-33-4566-01	ATL2	ENST00000419554.2,ENST00000539122.1,ENST00000443098.1,ENST00000449130.1,ENST00000378954.4,ENST00000406122.1,ENST00000402054.1,ENST00000405384.2,ENST00000332337.4,ENST00000452935.2,ENST00000546051.1	chr2	38536572:38536648:38537450:38537589:38540292:38540385,	38537451	38537589	38537548	38537548	Frame_Shift_Del	C	-	p.K282fs
LUSC	TCGA-33-4566-01	BOLA3	ENST00000295326.4	chr2	74362541:74362785:74372315:74372430:74374947:74375032,	74372316	74372430	74372362	74372362	Frame_Shift_Del	T	-	p.K41fs
LUSC	TCGA-33-4566-01	STK10	ENST00000517524.1,ENST00000522936.1,ENST00000176763.5	chr5	171532661:171532741:171533623:171533818:171534783:171534856,	171533624	171533818	171533644	171533644	Frame_Shift_Del	C	-	p.T256fs
LUSC	TCGA-33-4566-01	NEO1	ENST00000261908.6,ENST00000560328.1,ENST00000339362.5,ENST00000560808.1,ENST00000558964.1	chr15	73581486:73581579:73585730:73585889:73590688:73590952,	73585731	73585889	73585763	73585763	Frame_Shift_Del	G	-	p.D1259fs
LUSC	TCGA-33-4566-01	RANGAP1	ENST00000407260.4,ENST00000455915.2,ENST00000446258.1,ENST00000356244.3,ENST00000452543.1,ENST00000405486.1	chr22	41660747:41660847:41664100:41664160:41670603:41670664,	41664101	41664160	41664101	41664102	Frame_Shift_Ins	-	A	p.L100_splice
LUSC	TCGA-33-4583-01	HSDL2	ENST00000488101.1,ENST00000398803.1,ENST00000262542.7,ENST00000467434.1,ENST00000398805.3	chr9	115181139:115181238:115200710:115200905:115203978:115204050,	115200711	115200905	115200823	115200823	Frame_Shift_Del	T	-	p.S237fs
LUSC	TCGA-33-4583-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	29997731:29997949:30000762:30001240:30003034:30003204,	30000763	30001240	30000937	30000937	Frame_Shift_Del	T	-	p.H1559fs
LUSC	TCGA-33-4583-01	TMC3	ENST00000359440.5,ENST00000558726.1	chr15	81623557:81625603:81627060:81627316:81628949:81628992,	81627061	81627316	81627216	81627216	Frame_Shift_Del	G	-	p.N768fs
LUSC	TCGA-33-6737-01	UBE2M	ENST00000595957.1,ENST00000253023.3,ENST00000596985.1	chr19	59067682:59067746:59068053:59068157:59068258:59068297,	59068054	59068157	59068153	59068153	Frame_Shift_Del	C	-	p.G83fs
LUSC	TCGA-34-5231-01	SUMO1	ENST00000409205.1	chr2	203079079:203079157:203084754:203084829:203103162:203103185,203079079:203079152:203084754:203084829:203103162:203103185,	203084755	203084829	203084829	203084829	Frame_Shift_Del	C	-	p.E5_splice
LUSC	TCGA-34-5231-01	PICALM	ENST00000529016.1	chr11	85685824:85685855:85692171:85692271:85692787:85692818,85670079:85670103:85692171:85692271:85692787:85692818,	85692172	85692271	85692259	85692259	Frame_Shift_Del	C	-	p.W564fs
LUSC	TCGA-34-5231-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000355666.1,ENST00000476784.1,ENST00000481605.1,ENST00000399017.2	chr21	38516859:38516945:38519780:38519903:38520845:38520947,	38519781	38519903	38519833	38519833	Frame_Shift_Del	C	-	p.A649fs
LUSC	TCGA-34-5239-01	VWA3A	ENST00000299840.6,ENST00000389397.4,ENST00000563755.1,ENST00000389398.5	chr16	22162015:22162167:22163831:22163955:22166887:22166985,	22163832	22163955	22163889	22163889	Frame_Shift_Del	C	-	p.C1113fs
LUSC	TCGA-34-5240-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7581127	7581142	Frame_Shift_Del	GCAGAAGCAGAAGGTG	-	p.L1568fs
LUSC	TCGA-34-5927-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106156934	106156935	Frame_Shift_Ins	-	T	p.P633fs
LUSC	TCGA-37-3789-01	GLIS3	ENST00000324333.10,ENST00000381971.3,ENST00000461870.1	chr9	3827697:3828408:3829309:3829492:3856008:3856184,	3829310	3829492	3829318	3829318	Frame_Shift_Del	C	-	p.G883fs
LUSC	TCGA-37-3789-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149853	39149853	Frame_Shift_Del	C	-	p.A533fs
LUSC	TCGA-37-4135-01	RPS6KC1	ENST00000366959.3,ENST00000543354.1	chr1	213244347:213244383:213251037:213251158:213277795:213277911,213224603:213224851:213251037:213251158:213277795:213277911,	213251038	213251158	213251154	213251155	Frame_Shift_Ins	-	T	p.V86fs
LUSC	TCGA-37-4135-01	GNPDA2	ENST00000507917.1	chr4	44720329:44720427:44724100:44724259:44728490:44728540,44719129:44719312:44724100:44724259:44728490:44728540,	44724101	44724259	44724131	44724131	Frame_Shift_Del	C	-	p.D32fs
LUSC	TCGA-37-4135-01	KAZALD1	ENST00000470106.1	chr10	102821829:102821872:102822742:102822860:102823962:102824102,	102822743	102822860	102822791	102822809	Frame_Shift_Del	CTGCAGGAGGCGGCCCGCG	-	p.L148fs
LUSC	TCGA-37-4141-01	SLC30A10	ENST00000536446.1,ENST00000356609.2,ENST00000366926.3	chr1	220088790:220089290:220091596:220091836:220100369:220100447,	220091597	220091836	220091756	220091756	Frame_Shift_Del	G	-	p.L267fs
LUSC	TCGA-37-4141-01	EDNRB	ENST00000334286.5,ENST00000377211.4,ENST00000446573.1	chr13	78473993:78474102:78474655:78474789:78475192:78475342,	78474656	78474789	78474726	78474726	Frame_Shift_Del	G	-	p.L429fs
LUSC	TCGA-37-4141-01	SBSN	ENST00000518157.1	chr19	36015760:36015826:36017545:36017779:36018808:36019123,	36017546	36017779	36017741	36017741	Frame_Shift_Del	G	-	p.H481fs
LUSC	TCGA-37-5819-01	SBSN	ENST00000518157.1	chr19	36015760:36015826:36017545:36017779:36018808:36019123,	36017546	36017779	36017720	36017720	Frame_Shift_Del	C	-	p.G488fs
LUSC	TCGA-37-5819-01	TTLL1	ENST00000331018.7,ENST00000266254.7	chr22	43464415:43464596:43465641:43465850:43471479:43471596,	43465642	43465850	43465699	43465699	Frame_Shift_Del	C	-	p.E89fs
LUSC	TCGA-39-5016-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000461720.1,ENST00000358392.2,ENST00000370096.3	chr1	103468302:103468347:103468770:103468824:103469999:103470037,	103468771	103468824	103468777	103468777	Frame_Shift_Del	C	-	p.G676fs
LUSC	TCGA-39-5031-01	SOS1	ENST00000426016.1,ENST00000402219.2	chr2	39214613:39214732:39222263:39222528:39224062:39224179,39216410:39216455:39222263:39222528:39224062:39224179,	39222264	39222528	39222389	39222390	Frame_Shift_Del	TC	-	p.E1074fs
LUSC	TCGA-39-5037-01	RFTN1	ENST00000451036.1,ENST00000441460.1,ENST00000431547.1,ENST00000334133.4,ENST00000449415.1	chr3	16450979:16450990:16475357:16475544:16535231:16535384,	16475358	16475544	16475533	16475534	Frame_Shift_Ins	-	A	p.P52fs
LUSC	TCGA-39-5037-01	NEIL3	ENST00000264596.3	chr4	178262629:178262796:178272533:178272703:178274461:178274882,	178272534	178272703	178272546	178272546	Frame_Shift_Del	T	-	p.T294fs
LUSC	TCGA-43-3394-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576904	7576904	Frame_Shift_Del	G	-	p.S314fs
LUSC	TCGA-43-3920-01	KANSL2	ENST00000420613.2,ENST00000548701.1,ENST00000550347.1	chr12	49047671:49047958:49048723:49048843:49054148:49054402,	49048724	49048843	49048747	49048748	Frame_Shift_Ins	-	A	p.I624fs
LUSC	TCGA-43-3920-01	DGCR6	ENST00000480608.1	chr22	18894077:18894599:18897691:18897785:18898400:18898541,	18897692	18897785	18897772	18897773	Frame_Shift_Ins	-	GC	p.Q120fs
LUSC	TCGA-43-3920-01	DGCR6	ENST00000413981.1,ENST00000331444.6,ENST00000483718.1	chr22	18894090:18894238:18897684:18897785:18898400:18898541,	18897685	18897785	18897772	18897773	Frame_Shift_Ins	-	GC	p.Q120fs
LUSC	TCGA-43-6143-01	ZMIZ1	ENST00000334512.5	chr10	81058162:81058337:81058806:81058948:81060488:81060699,	81058807	81058948	81058846	81058847	Frame_Shift_Del	GG	-	p.R569fs
LUSC	TCGA-43-6143-01	MGA	ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42032254:42032401:42034743:42035370:42040834:42040910,	42034744	42035370	42034848	42034848	Frame_Shift_Del	G	-	p.G1564fs
LUSC	TCGA-43-6143-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472485	70472485	Frame_Shift_Del	C	-	p.Q207fs
LUSC	TCGA-46-3766-01	CAPN8	ENST00000419193.2,ENST00000366873.2	chr1	223806994:223807155:223807893:223807968:223810516:223810602,	223807894	223807968	223807956	223807956	Frame_Shift_Del	C	-	p.W304fs
LUSC	TCGA-46-3769-01	ST8SIA6	ENST00000377602.4	chr10	17365063:17365156:17369012:17369125:17373406:17373499,	17369013	17369125	17369069	17369070	Frame_Shift_Ins	-	C	p.G193fs
LUSC	TCGA-46-3769-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578230	7578230	Frame_Shift_Del	C	-	p.D207fs
LUSC	TCGA-46-6025-01	SUGP1	ENST00000247001.5,ENST00000592188.1,ENST00000591007.2,ENST00000589144.1,ENST00000588731.2,ENST00000587119.1	chr19	19388542:19388688:19389498:19389605:19390021:19390199,	19389499	19389605	19389509	19389509	Frame_Shift_Del	T	-	p.K542fs
LUSC	TCGA-46-6026-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
LUSC	TCGA-51-4079-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579545	7579545	Frame_Shift_Del	C	-	p.D48fs
LUSC	TCGA-51-4080-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056326	27056326	Frame_Shift_Del	C	-	p.A441fs
LUSC	TCGA-51-4080-01	ALG13	ENST00000394780.3,ENST00000470971.1,ENST00000251943.4,ENST00000436609.1	chrX	110970077:110970283:110970559:110970673:110970841:110970998,	110970560	110970673	110970594	110970594	Frame_Shift_Del	C	-	p.P671fs
LUSC	TCGA-51-4081-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094433	27094440	Frame_Shift_Del	ACCTCTGG	-	p.K1047fs
LUSC	TCGA-51-4081-01	KCTD16	ENST00000512467.1	chr5	143553869:143554035:143585951:143587109:143853222:143854033,	143585952	143587109	143586805	143586806	Frame_Shift_Ins	-	T	p.L176fs
LUSC	TCGA-56-1622-01	GPM6A	ENST00000506894.1	chr4	176594904:176594987:176622725:176622918:176733341:176733400,176594904:176594987:176622725:176622918:176923459:176923483,	176622726	176622918	176622884	176622885	Frame_Shift_Ins	-	C	p.G24fs
LUSC	TCGA-56-5898-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000305960.9,ENST00000556501.1,ENST00000543237.1	chr14	67555699:67555792:67567572:67567628:67576856:67576976,	67567573	67567628	67567581	67567581	Frame_Shift_Del	G	-	p.G383fs
LUSC	TCGA-60-2698-01	EDIL3	ENST00000380138.3,ENST00000507663.1,ENST00000296591.5	chr5	83402477:83402648:83433058:83433172:83476210:83476339,	83433059	83433172	83433136	83433136	Frame_Shift_Del	C	-	p.G131fs
LUSC	TCGA-60-2707-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579585	7579585	Frame_Shift_Del	G	-	p.P34fs
LUSC	TCGA-60-2708-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000342992.6,ENST00000460472.2	chr2	179393000:179393154:179393254:179393946:179394686:179394843,	179393255	179393946	179393337	179393343	Frame_Shift_Del	TTAATAT	-	p.N33144fs
LUSC	TCGA-60-2711-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577145	7577146	Frame_Shift_Ins	-	T	p.L264fs
LUSC	TCGA-60-2712-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000600603.1,ENST00000601501.1,ENST00000594151.1,ENST00000598325.1,ENST00000594165.1,ENST00000594640.1,ENST00000601638.1,ENST00000601675.1,ENST00000221557.9,ENST00000391842.1,ENST00000598632.1	chr19	50357908:50357991:50358087:50358145:50358226:50358322,	50358088	50358145	50358117	50358118	Frame_Shift_Ins	-	A	p.I141fs
LUSC	TCGA-60-2713-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579470	Frame_Shift_Del	C	-	p.V73fs
LUSC	TCGA-60-2722-01	SNTG2	ENST00000407292.1,ENST00000308624.5	chr2	1204788:1204916:1241659:1241789:1243509:1243548,	1241660	1241789	1241743	1241743	Frame_Shift_Del	G	-	p.W268fs
LUSC	TCGA-60-2723-01	IGDCC3	ENST00000327987.4	chr15	65627628:65627759:65628149:65628294:65667434:65667638,	65628150	65628294	65628268	65628268	Frame_Shift_Del	G	-	p.Q146fs
LUSC	TCGA-60-2726-01	RIC8A	ENST00000527696.1,ENST00000526104.1,ENST00000527728.1	chr11	211198:211349:212415:212511:212614:212724,	212416	212511	212501	212501	Frame_Shift_Del	T	-	p.L352fs
LUSC	TCGA-63-5128-01	ALMS1	ENST00000409009.1,ENST00000264448.6,ENST00000377715.1	chr2	73659325:73659419:73675089:73681194:73682288:73682422,	73675090	73681194	73678938	73678938	Frame_Shift_Del	A	-	p.T1761fs
LUSC	TCGA-63-5128-01	P2RX2	ENST00000389110.3,ENST00000536121.1,ENST00000542301.1,ENST00000348800.5,ENST00000343948.4,ENST00000535910.1	chr12	133196043:133196160:133196264:133196336:133196429:133196505,	133196265	133196336	133196330	133196330	Frame_Shift_Del	C	-	p.C125fs
LUSC	TCGA-63-5128-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576878	7576887	Frame_Shift_Del	AGTGGTTTCT	-	p.K320fs
LUSC	TCGA-63-5128-01	GABRE	ENST00000483564.1,ENST00000486255.1,ENST00000370328.3	chrX	151123524:151123556:151123839:151124039:151124179:151124307,	151123840	151124039	151123842	151123843	Frame_Shift_Ins	-	C	p.R378fs
LUSC	TCGA-63-6202-01	CNDP2	ENST00000579847.1,ENST00000324262.4,ENST00000583695.1,ENST00000324301.8	chr18	72180811:72180954:72183462:72183627:72185733:72185793,	72183463	72183627	72183485	72183485	Frame_Shift_Del	G	-	p.W309fs
LUSC	TCGA-66-2727-01	TMEM63B	ENST00000371893.2,ENST00000323267.6,ENST00000533121.1,ENST00000259746.9	chr6	44118300:44118366:44119582:44119745:44120329:44120435,	44119583	44119745	44119666	44119666	Frame_Shift_Del	T	-	p.L586fs
LUSC	TCGA-66-2742-01	CASP4	ENST00000533730.1	chr11	104821754:104821825:104822622:104822790:104825473:104825725,	104822623	104822790	104822634	104822635	Frame_Shift_Del	TT	-	p.E120fs
LUSC	TCGA-66-2742-01	CASP4	ENST00000417440.2,ENST00000393150.3,ENST00000524843.1,ENST00000444739.2	chr11	104821754:104821825:104822622:104822732:104825473:104825725,	104822623	104822732	104822634	104822635	Frame_Shift_Del	TT	-	p.E120fs
LUSC	TCGA-66-2742-01	ULK2	ENST00000574732.2,ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19741842:19741896:19744801:19744860:19746433:19746451,	19744802	19744860	19744820	19744820	Frame_Shift_Del	T	-	p.N229fs
LUSC	TCGA-66-2744-01	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58001040	58001040	Frame_Shift_Del	C	-	p.P132fs
LUSC	TCGA-66-2744-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58001040	58001040	Frame_Shift_Del	C	-	p.P132fs
LUSC	TCGA-66-2754-01	GLUD1	ENST00000537649.1,ENST00000277865.4,ENST00000544149.1	chr10	88820444:88820582:88820671:88820809:88822412:88822592,	88820672	88820809	88820739	88820739	Frame_Shift_Del	C	-	p.G331fs
LUSC	TCGA-66-2754-01	IL12RB1	ENST00000593993.2,ENST00000600835.2	chr19	18179198:18179336:18180355:18180523:18182921:18183159,	18180356	18180523	18180373	18180373	Frame_Shift_Del	G	-	p.P431fs
LUSC	TCGA-66-2756-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000565605.1,ENST00000317147.5,ENST00000569240.1	chr16	58621741:58621782:58622702:58622810:58633139:58633415,	58622703	58622810	58622794	58622794	Frame_Shift_Del	C	-	p.G40fs
LUSC	TCGA-66-2756-01	HYDIN	ENST00000393567.2	chr16	70900071:70900232:70902472:70902691:70905939:70906082,	70902473	70902691	70902623	70902624	Frame_Shift_Ins	-	T	p.N3719fs
LUSC	TCGA-66-2756-01	MAPT	ENST00000570299.1,ENST00000334239.8,ENST00000446361.3	chr17	43972039:43972052:44039686:44039836:44049224:44049311,43972039:43972052:44039686:44039836:44055740:44055791,	44039687	44039836	44039763	44039763	Frame_Shift_Del	G	-	p.L20fs
LUSC	TCGA-66-2757-01	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904587	100904587	Frame_Shift_Del	G	-	p.L47fs
LUSC	TCGA-66-2759-01	PPHLN1	ENST00000432191.2	chr12	42835116:42835231:42836442:42836543:42839774:42840092,	42836443	42836543	42836533	42836534	Frame_Shift_Ins	-	A	p.T372fs
LUSC	TCGA-66-2763-01	FAM117A	ENST00000513602.1	chr17	47799868:47799956:47809912:47810082:47824542:47824625,47799868:47799956:47809912:47810082:47865858:47865937,	47809913	47810082	47809948	47809948	Frame_Shift_Del	C	-	p.A111fs
LUSC	TCGA-66-2766-01	POSTN	ENST00000473823.1,ENST00000379749.4,ENST00000541179.1	chr13	38137469:38137507:38138655:38138697:38143880:38143927,	38138656	38138697	38138674	38138675	Frame_Shift_Ins	-	T	p.Q818fs
LUSC	TCGA-66-2767-01	FEZ2	ENST00000305852.7,ENST00000405912.3,ENST00000357996.4,ENST00000413938.1,ENST00000487282.1,ENST00000464964.1	chr2	36782830:36782891:36785580:36785656:36805739:36805975,	36785581	36785656	36785621	36785622	Frame_Shift_Ins	-	T	p.N340fs
LUSC	TCGA-66-2767-01	COL4A6	ENST00000538570.1,ENST00000545689.1,ENST00000372216.4,ENST00000394872.2,ENST00000334504.7	chrX	107408106:107408268:107408599:107408716:107412724:107412850,	107408600	107408716	107408661	107408662	Frame_Shift_Ins	-	A	p.L1250fs
LUSC	TCGA-66-2768-01	CD47	ENST00000355354.7,ENST00000361309.5	chr3	107779591:107779699:107789939:107790029:107798837:107799191,	107789940	107790029	107789994	107789995	Frame_Shift_Ins	-	A	p.I145fs
LUSC	TCGA-66-2768-01	INPPL1	ENST00000545355.1,ENST00000298229.2,ENST00000538751.1,ENST00000541756.1	chr11	71946339:71946495:71946718:71946797:71946889:71946990,	71946719	71946797	71946722	71946722	Frame_Shift_Del	G	-	p.W888fs
LUSC	TCGA-66-2770-01	DNMT3A	ENST00000402667.1,ENST00000321117.5,ENST00000470983.1,ENST00000496570.1,ENST00000380756.3,ENST00000264709.3,ENST00000380746.4	chr2	25469919:25470027:25470459:25470618:25470905:25471121,	25470460	25470618	25470586	25470587	Frame_Shift_Ins	-	A	p.V296fs
LUSC	TCGA-66-2771-01	NIPBL	ENST00000282516.8,ENST00000448238.2	chr5	37027460:37027514:37036480:37036589:37038703:37038840,	37036481	37036589	37036542	37036542	Frame_Shift_Del	T	-	p.V1975fs
LUSC	TCGA-66-2785-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1265952	1265952	Frame_Shift_Del	G	-	p.T2614fs
LUSC	TCGA-66-2786-01	COLEC12	ENST00000400256.3	chr18	333006:333143:334741:335230:346294:347341,	334742	335230	334892	334904	Frame_Shift_Del	GCTCCCCAACGGT	-	p.T552fs
LUSC	TCGA-66-2787-01	NTN5	ENST00000600468.1	chr19	49167835:49168024:49173612:49174263:49176188:49176264,	49173613	49174263	49174065	49174066	Frame_Shift_Ins	-	T	p.T60fs
LUSC	TCGA-66-2788-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711960	89711960	Frame_Shift_Del	T	-	p.L193fs
LUSC	TCGA-66-2789-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67937289	67937289	Frame_Shift_Del	C	-	p.A178fs
LUSC	TCGA-66-2791-01	MMGT1	ENST00000433339.2	chrX	135049548:135049652:135053216:135053269:135055755:135055981,	135053217	135053269	135053241	135053241	Frame_Shift_Del	T	-	p.K101fs
LUSC	TCGA-66-2793-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094376	27094376	Frame_Shift_Del	G	-	p.L1028fs
LUSC	TCGA-66-2793-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449549	85449549	Frame_Shift_Del	A	-	p.A326fs
LUSC	TCGA-66-2795-01	RSPH1	ENST00000291536.3	chr21	43912867:43912973:43913075:43913189:43916242:43916296,	43913076	43913189	43913095	43913095	Frame_Shift_Del	A	-	p.F50fs
LUSC	TCGA-66-2800-01	GAS7	ENST00000585266.1,ENST00000580865.1,ENST00000437099.2,ENST00000542249.1,ENST00000579158.1,ENST00000580811.1,ENST00000323816.4,ENST00000432992.2,ENST00000581871.1	chr17	9830046:9830086:9837482:9837561:9843442:9843517,	9837483	9837561	9837542	9837542	Frame_Shift_Del	C	-	p.A276fs
LUSC	TCGA-85-6560-01	PGM2	ENST00000537241.1,ENST00000381967.4,ENST00000512556.1	chr4	37850142:37850272:37851804:37851994:37857228:37857362,	37851805	37851994	37851992	37851992	Frame_Shift_Del	G	-	p.A534fs
LUSC	TCGA-85-6560-01	PSG9	ENST00000270077.3	chr19	43762353:43762608:43763008:43763287:43771935:43772301,43762353:43762608:43763008:43763287:43766011:43766290,	43763009	43763287	43763205	43763206	Frame_Shift_Ins	-	C	p.P264fs
MESO	TCGA-MQ-A6BR-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923373	150923373	Frame_Shift_Del	A	-	p.K674fs
MESO	TCGA-MQ-A6BR-01	NF2	ENST00000361676.4	chr22	30032739:30032865:30035078:30035201:30038190:30038274,29999987:30000101:30035078:30035201:30038190:30038274,	30035079	30035201	30035096	30035100	Frame_Shift_Del	TTCAA	-	p.VSK86fs
MESO	TCGA-MQ-A4LM-01	HDLBP	ENST00000453141.1	chr2	242194556:242194573:242194788:242194926:242195598:242195814,	242194789	242194926	242194866	242194867	Frame_Shift_Ins	-	T	p.Q335fs
MESO	TCGA-MQ-A4LM-01	HDLBP	ENST00000391975.1,ENST00000391976.2,ENST00000310931.4	chr2	242194556:242194573:242194788:242194995:242195598:242195814,	242194789	242194995	242194866	242194867	Frame_Shift_Ins	-	T	p.Q335fs
MESO	TCGA-NQ-A57I-01	CHD8	ENST00000557364.1	chr14	21897295:21897494:21898959:21900017:21924190:21924239,	21898960	21900017	21899476	21899477	Frame_Shift_Ins	-	AC	p.V109fs
MESO	TCGA-UT-A88D-01	SLC9A3R1	ENST00000262613.5,ENST00000578958.1,ENST00000413388.2	chr17	72759566:72759659:72763074:72763115:72764285:72764299,	72763075	72763115	72763089	72763089	Frame_Shift_Del	C	-	p.P258fs
MESO	TCGA-3H-AB3S-01	SLC44A4	ENST00000544672.1,ENST00000414427.1,ENST00000229729.6	chr6	31842236:31842297:31842497:31842623:31842705:31842805,	31842498	31842623	31842552	31842552	Frame_Shift_Del	T	-	p.E62fs
MESO	TCGA-3U-A98F-01	SNRPA1	ENST00000558036.1,ENST00000394082.4,ENST00000560496.1,ENST00000560433.1,ENST00000540017.2,ENST00000254193.6,ENST00000559309.1	chr15	101821949:101821987:101825171:101825265:101825930:101826006,	101825172	101825265	101825212	101825213	Frame_Shift_Ins	-	T	p.S223fs
MESO	TCGA-3U-A98F-01	GAS2L1	ENST00000406549.3,ENST00000360113.2,ENST00000341313.6	chr22	29703047:29703143:29704076:29704728:29706428:29706536,	29704077	29704728	29704404	29704416	Frame_Shift_Del	GGCCACCTTCATC	-	p.VATFI103fs
MESO	TCGA-3U-A98F-01	GAS2L1	ENST00000403764.1	chr22	29703047:29703143:29704048:29704728:29706428:29706536,	29704049	29704728	29704404	29704416	Frame_Shift_Del	GGCCACCTTCATC	-	p.VATFI103fs
MESO	TCGA-3H-AB3O-01	RHOT1	ENST00000394692.2,ENST00000358365.3,ENST00000333942.6,ENST00000581031.1,ENST00000578205.1,ENST00000583994.1,ENST00000581094.1,ENST00000545287.2,ENST00000354266.3	chr17	30527974:30528075:30529788:30529919:30530908:30530992,	30529789	30529919	30529792	30529792	Frame_Shift_Del	C	-	p.T402fs
MESO	TCGA-SC-A6LN-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2	chr6	109770602:109770684:109770859:109770986:109771172:109771288,	109770860	109770986	109770966	109770967	Frame_Shift_Del	AG	-	p.L462fs
MESO	TCGA-SC-A6LN-01	STRAP	ENST00000538352.1,ENST00000419869.2,ENST00000541731.1,ENST00000025399.6	chr12	16046980:16047077:16048292:16048430:16050815:16050952,	16048293	16048430	16048340	16048341	Frame_Shift_Del	AT	-	p.N183fs
MESO	TCGA-YS-AA4M-01	CCDC134	ENST00000255784.5	chr22	42206210:42206295:42209267:42209449:42209754:42209826,	42209268	42209449	42209343	42209355	Frame_Shift_Del	ACTTTGACCACAA	-	p.YFDHN129fs
MESO	TCGA-3H-AB3T-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86312037	86312037	Frame_Shift_Del	G	-	p.A335fs
MESO	TCGA-YS-A95B-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000294599.4	chr1	3427346:3427466:3428113:3428251:3428569:3428692,	3428114	3428251	3428208	3428209	Frame_Shift_Ins	-	C	p.G340fs
MESO	TCGA-3U-A98H-01	BAP1	ENST00000296288.5,ENST00000471532.1,ENST00000460680.1	chr3	52440844:52440923:52441189:52441332:52441414:52441476,	52441190	52441332	52441265	52441265	Frame_Shift_Del	G	-	p.H169fs
MESO	TCGA-3U-A98H-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728785	50728786	Frame_Shift_Ins	-	CTTG	p.KV76fs
MESO	TCGA-MQ-A6BS-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47127684:47127804:47129602:47129737:47139444:47139571,	47129603	47129737	47129622	47129623	Frame_Shift_Ins	-	T	p.L1753fs
MESO	TCGA-ZN-A9VW-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937087	48937087	Frame_Shift_Del	A	-	p.I285fs
MESO	TCGA-TS-A7P1-01	BAP1	ENST00000478368.1	chr3	52436617:52436690:52436794:52436956:52437153:52437314,	52436795	52436956	52436847	52436847	Frame_Shift_Del	G	-	p.A644fs
MESO	TCGA-TS-A7P1-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52436617:52436690:52436794:52436887:52437153:52437314,	52436795	52436887	52436847	52436847	Frame_Shift_Del	G	-	p.A644fs
MESO	TCGA-NQ-A638-01	VAPB	ENST00000520497.1	chr20	56993301:56993419:57015962:57016139:57019132:57019587,	57015963	57016139	57016127	57016128	Frame_Shift_Ins	-	A	p.A188fs
MESO	TCGA-ZN-A9VS-01	SETD5	ENST00000407969.1	chr3	9471656:9471735:9475528:9475634:9476017:9476169,9470608:9470693:9475528:9475634:9475960:9476169,	9475529	9475634	9475543	9475544	Frame_Shift_Ins	-	G	p.G29fs
MESO	TCGA-ZN-A9VS-01	CACNA2D1	ENST00000423588.1,ENST00000461275.1,ENST00000356253.5,ENST00000356860.3	chr7	81689743:81689843:81693619:81693670:81695770:81695840,	81693620	81693670	81693627	81693628	Frame_Shift_Del	CC	-	p.LV257fs
MESO	TCGA-ZN-A9VS-01	DPY19L3	ENST00000585597.1,ENST00000342179.5,ENST00000586987.1,ENST00000392250.2,ENST00000588648.3	chr19	32944050:32944182:32945844:32945946:32949005:32949079,	32945845	32945946	32945924	32945924	Frame_Shift_Del	T	-	p.L356fs
MESO	TCGA-ZN-A9VS-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41012200:41012334:41022042:41022130:41025124:41025467,	41022043	41022130	41022080	41022080	Frame_Shift_Del	A	-	p.G645fs
MESO	TCGA-SH-A7BD-01	NMNAT2	ENST00000287713.6,ENST00000294868.4,ENST00000473046.1	chr1	183253129:183253174:183253844:183253925:183255796:183255923,	183253845	183253925	183253848	183253849	Frame_Shift_Ins	-	A	p.R176fs
MESO	TCGA-TS-A8AI-01	SUPT20H	ENST00000356185.3,ENST00000360252.4,ENST00000469488.2,ENST00000464744.1,ENST00000350612.6	chr13	37596147:37596217:37598171:37598330:37598476:37598579,	37598172	37598330	37598221	37598224	Frame_Shift_Del	TTGA	-	p.NQ514fs
MESO	TCGA-UT-A88G-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078130	170078140	Frame_Shift_Del	TCCAGACAAAT	-	p.LQTN4fs
MESO	TCGA-XT-AASU-01	BAP1	ENST00000478368.1	chr3	52436617:52436690:52436794:52436956:52437153:52437314,	52436795	52436956	52436846	52436847	Frame_Shift_Ins	-	G	p.E644fs
MESO	TCGA-XT-AASU-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52436617:52436690:52436794:52436887:52437153:52437314,	52436795	52436887	52436846	52436847	Frame_Shift_Ins	-	G	p.E644fs
MESO	TCGA-3H-AB3L-01	SLC26A8	ENST00000355574.2,ENST00000490799.1,ENST00000486155.1	chr6	35949897:35949980:35959435:35959585:35960286:35960451,	35959436	35959585	35959451	35959451	Frame_Shift_Del	G	-	p.P309fs
MESO	TCGA-3H-AB3U-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000330022.7	chr3	47108559:47108608:47125209:47125872:47127684:47127804,	47125210	47125872	47125275	47125276	Frame_Shift_Del	GC	-	p.QP1998fs
MESO	TCGA-3H-AB3U-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437899	52437908	Frame_Shift_Del	TTCCCCTTAT	-	p.YKGK418fs
MESO	TCGA-YS-A95C-01	WDR53	ENST00000332629.5	chr3	196281064:196281678:196287866:196288362:196293747:196294178,	196287867	196288362	196288330	196288337	Frame_Shift_Del	GTCCACTT	-	p.KWT4fs
MESO	TCGA-TS-A7PB-01	RFC4	ENST00000296273.2,ENST00000417876.1,ENST00000392481.2	chr3	186507930:186508044:186508114:186508195:186509513:186509639,	186508115	186508195	186508170	186508171	Frame_Shift_Ins	-	T	p.S276fs
MESO	TCGA-UD-AAC5-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763923	74763924	Frame_Shift_Ins	-	C	p.A275fs
MESO	TCGA-UD-AAC5-01	SFTPB	ENST00000519937.2,ENST00000409383.1,ENST00000393822.3,ENST00000342375.3,ENST00000428225.1	chr2	85892411:85892501:85892728:85892917:85893739:85893750,	85892729	85892917	85892782	85892782	Frame_Shift_Del	C	-	p.V177fs
MESO	TCGA-ZN-A9VV-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52439125:52439310:52439780:52439928:52440268:52440338,	52439781	52439928	52439815	52439836	Frame_Shift_Del	GTTTGCTTCCAGCACCAGCGGG	-	p.SPLVLEAN292fs
MESO	TCGA-MQ-A6BQ-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253745	55253746	Frame_Shift_Ins	-	T	p.R497fs
MESO	TCGA-LK-A4NY-01	RET	ENST00000340058.5,ENST00000355710.3	chr10	43595906:43596170:43597789:43598077:43600399:43600641,	43597790	43598077	43597829	43597842	Frame_Shift_Del	TCCTGTCACCCACA	-	p.FLSPT126fs
MESO	TCGA-LK-A4NZ-01	TDO2	ENST00000509738.1,ENST00000536354.2	chr4	156824846:156824945:156825169:156825275:156826218:156826308,	156825170	156825275	156825179	156825180	Frame_Shift_Ins	-	A	p.LK15fs
MESO	TCGA-LK-A4NZ-01	NF2	ENST00000334961.7,ENST00000353887.4	chr22	30035078:30035201:30038190:30038274:30050645:30050714,29999987:30000101:30038190:30038274:30050645:30050714,	30038191	30038274	30038257	30038258	Frame_Shift_Ins	-	A	p.R144fs
MESO	TCGA-LK-A4O6-01	POGLUT1	ENST00000497447.1,ENST00000486607.1,ENST00000476573.1,ENST00000295588.4,ENST00000460339.1	chr3	119188666:119188757:119190155:119190299:119196159:119196254,	119190156	119190299	119190164	119190164	Frame_Shift_Del	A	-	p.E63fs
MESO	TCGA-LK-A4O6-01	EPB41L1	ENST00000373950.2,ENST00000202028.5,ENST00000430276.1,ENST00000441639.1,ENST00000373941.1,ENST00000338074.2,ENST00000373946.3	chr20	34770193:34770269:34773038:34773257:34775597:34775685,	34773039	34773257	34773062	34773062	Frame_Shift_Del	G	-	p.R197fs
MESO	TCGA-MQ-A4LP-01	RANBP3L	ENST00000502994.1	chr5	36265564:36265622:36268294:36268369:36269491:36269509,	36268295	36268369	36268346	36268346	Frame_Shift_Del	T	-	p.M98fs
MESO	TCGA-TS-A7P0-01	SERINC5	ENST00000512721.1,ENST00000512972.2,ENST00000509193.1,ENST00000507668.2	chr5	79470776:79470870:79473136:79473219:79473707:79473886,	79473137	79473219	79473168	79473169	Frame_Shift_Ins	-	A	p.F142fs
MESO	TCGA-3H-AB3K-01	BAP1	ENST00000470173.1,ENST00000296288.5,ENST00000460680.1,ENST00000483984.1	chr3	52441973:52442093:52442489:52442622:52443569:52443624,	52442490	52442622	52442605	52442606	Frame_Shift_Del	AT	-	p.I47fs
MESO	TCGA-UD-AAC1-01	EXTL1	ENST00000374280.3	chr1	26357622:26357755:26357950:26358057:26358886:26358976,	26357951	26358057	26357995	26357995	Frame_Shift_Del	C	-	p.P428fs
MESO	TCGA-UD-AAC1-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214820025	214820026	Frame_Shift_Ins	-	A	p.E2371fs
MESO	TCGA-UD-AAC1-01	THADA	ENST00000407351.1,ENST00000398653.1,ENST00000405006.4,ENST00000405975.2,ENST00000415080.2	chr2	43458345:43458482:43459851:43460021:43506903:43507035,	43459852	43460021	43459889	43459890	Frame_Shift_Del	CT	-	p.S1810fs
MESO	TCGA-UD-AAC1-01	ATP13A3	ENST00000256031.4,ENST00000439040.1,ENST00000429136.1	chr3	194134542:194134568:194140607:194140696:194146070:194146099,	194140608	194140696	194140688	194140689	Frame_Shift_Ins	-	A	p.FF1107fs
MESO	TCGA-UD-AAC1-01	ST8SIA4	ENST00000231461.5	chr5	100191806:100192100:100222046:100222304:100231357:100231487,	100222047	100222304	100222244	100222244	Frame_Shift_Del	A	-	p.F102fs
MESO	TCGA-UD-AAC1-01	RELL2	ENST00000520674.1	chr5	141019030:141019216:141019486:141019862:141019978:141020012,141018361:141018427:141019486:141019862:141019978:141020012,	141019487	141019862	141019543	141019543	Frame_Shift_Del	C	-	p.S187fs
MESO	TCGA-UD-AAC1-01	WIZ	ENST00000545156.1,ENST00000599910.2	chr19	15538299:15538344:15538920:15539319:15540396:15540900,	15538921	15539319	15539052	15539052	Frame_Shift_Del	G	-	p.P306fs
MESO	TCGA-UD-AAC1-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838298	42838298	Frame_Shift_Del	G	-	p.W164fs
OV	TCGA-04-1357-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578179	7578180	Frame_Shift_Del	CA	-	p.P223fs
OV	TCGA-04-1367-01	SEC16B	ENST00000464631.2,ENST00000308284.6	chr1	177927266:177927497:177927974:177928110:177929925:177930074,177927266:177927497:177927974:177928110:177929476:177929538,	177927975	177928110	177928095	177928105	Frame_Shift_Del	CTTATGTACAT	-	p.D336fs
OV	TCGA-09-2044-01	PNP	ENST00000361505.5,ENST00000557229.1,ENST00000553418.1,ENST00000554056.1	chr14	20937572:20937694:20940466:20940636:20942630:20942730,	20940467	20940636	20940544	20940545	Frame_Shift_Del	TC	-	p.I30fs
OV	TCGA-09-2044-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265245	75265248	Frame_Shift_Del	GGTT	-	p.G1082fs
OV	TCGA-09-2044-01	IL21R	ENST00000395755.1,ENST00000564089.1,ENST00000395754.4,ENST00000337929.3	chr16	27445667:27445770:27448808:27449008:27454282:27454437,	27448809	27449008	27448978	27449003	Frame_Shift_Del	GAGTGTGGCAGCTTTCTCCTGGCTGA	-	p.E130fs
OV	TCGA-09-2049-01	CUBN	ENST00000377833.4	chr10	16949506:16949678:16955809:16955991:16957030:16957171,	16955810	16955991	16955948	16955948	Frame_Shift_Del	A	-	p.S2465fs
OV	TCGA-09-2050-01	TTLL7	ENST00000485638.1,ENST00000477524.1,ENST00000480174.1,ENST00000260505.8	chr1	84403534:84403699:84408145:84408362:84412806:84412965,	84408146	84408362	84408222	84408222	Frame_Shift_Del	A	-	p.L216fs
OV	TCGA-09-2056-01	OVGP1	ENST00000369732.3	chr1	111962231:111962348:111963897:111964083:111964186:111964295,	111963898	111964083	111963991	111963992	Frame_Shift_Ins	-	A	p.L270fs
OV	TCGA-09-2056-01	OVGP1	ENST00000481495.1	chr1	111962231:111962348:111963897:111964295:111965548:111965673,	111963898	111964295	111963991	111963992	Frame_Shift_Ins	-	A	p.L270fs
OV	TCGA-09-2056-01	COPB2	ENST00000507777.1,ENST00000333188.5	chr3	139077585:139077654:139077839:139078020:139078111:139078204,	139077840	139078020	139077948	139077949	Frame_Shift_Del	TG	-	p.T792fs
OV	TCGA-13-0751-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573984	7573985	Frame_Shift_Ins	-	AGGCCTT	p.L348fs
OV	TCGA-13-0751-01	ASTN2	ENST00000373986.3,ENST00000341734.4,ENST00000288520.5,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119204731:119204832:119249637:119249779:119380602:119380751,	119249638	119249779	119249758	119249767	Frame_Shift_Del	TCAGCAAAAC	-	p.S1072fs
OV	TCGA-13-0911-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579556	7579560	Frame_Shift_Del	ATCAA	-	p.L43fs
OV	TCGA-13-0923-01	PHKA2	ENST00000379942.4	chrX	18966861:18966944:18969221:18969390:18970611:18970659,	18969222	18969390	18969308	18969327	Frame_Shift_Del	GTGCCACAGGTGGCGGTGTT	-	p.N117fs
OV	TCGA-13-1410-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331281	85331281	Frame_Shift_Del	C	-	p.A175fs
OV	TCGA-13-1492-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717672	89717672	Frame_Shift_Del	C	-	p.R233fs
OV	TCGA-13-1505-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579462	7579462	Frame_Shift_Del	A	-	p.P75fs
OV	TCGA-20-0987-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37667781:37667883:37671983:37672061:37673692:37673809,	37671984	37672061	37671993	37671994	Frame_Shift_Ins	-	G	p.L926fs
OV	TCGA-20-0991-01	TWSG1	ENST00000262120.5	chr18	9359969:9360069:9396277:9396544:9399343:9400815,	9396278	9396544	9396353	9396368	Frame_Shift_Del	TCCCTTCTCTCTTCCG	-	p.I100fs
OV	TCGA-23-1031-01	PSAT1	ENST00000376588.3	chr9	80932591:80932720:80942966:80943104:80943896:80944370,	80942967	80943104	80943096	80943102	Frame_Shift_Del	AGGGCAT	-	p.K333fs
OV	TCGA-24-1422-01	TRA2B	ENST00000382191.4,ENST00000487615.1,ENST00000453386.2,ENST00000492417.1,ENST00000456380.1	chr3	185639830:185639914:185641583:185641772:185643251:185643414,	185641584	185641772	185641608	185641608	Frame_Shift_Del	A	-	p.F166fs
OV	TCGA-24-1422-01	TRA2B	ENST00000465245.1	chr3	185639830:185639914:185641583:185641796:185643251:185643414,	185641584	185641796	185641608	185641608	Frame_Shift_Del	A	-	p.F166fs
OV	TCGA-24-1423-01	ATP10B	ENST00000520108.1,ENST00000327245.5	chr5	160047353:160047957:160049400:160049592:160059135:160059374,	160049401	160049592	160049412	160049442	Frame_Shift_Del	GCTCGGTGGTTGTGGACACCATGACAGAGTT	-	p.N591fs
OV	TCGA-24-1434-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573995	7573995	Frame_Shift_Del	C	-	p.L344fs
OV	TCGA-24-1552-01	BRD2	ENST00000395289.2,ENST00000482914.1,ENST00000449085.2,ENST00000374831.4,ENST00000607833.1,ENST00000443797.2,ENST00000449025.1,ENST00000374825.4,ENST00000395287.1	chr6	32944189:32944241:32944338:32944713:32945218:32945347,	32944339	32944713	32944598	32944599	Frame_Shift_Ins	-	T	p.S362fs
OV	TCGA-24-1565-01	GRIA2	ENST00000449365.1,ENST00000471736.1,ENST00000264426.9,ENST00000393815.2,ENST00000507898.1,ENST00000296526.7,ENST00000323661.6	chr4	158256822:158257029:158257528:158257899:158262415:158262614,	158257529	158257899	158257676	158257682	Frame_Shift_Del	CCTTTAG	-	p.P541fs
OV	TCGA-24-1565-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48766643:48766775:48767782:48767934:48769716:48769860,	48767783	48767934	48767881	48767881	Frame_Shift_Del	T	-	p.K2220fs
OV	TCGA-24-1603-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576900	7576901	Frame_Shift_Ins	-	A	p.S315fs
OV	TCGA-24-2024-01	BAAT	ENST00000395051.3,ENST00000259407.2	chr9	104125204:104125297:104130401:104130604:104133220:104133544,	104130402	104130604	104130402	104130403	Frame_Shift_Ins	-	T	p.K223_splice
OV	TCGA-24-2030-01	TRPV2	ENST00000577397.1,ENST00000338560.7	chr17	16335097:16335164:16335279:16335614:16336887:16337012,	16335280	16335614	16335366	16335367	Frame_Shift_Ins	-	A	p.Q581fs
OV	TCGA-24-2260-01	TRIT1	ENST00000492612.2	chr1	40313657:40313769:40315790:40315933:40348989:40349106,40313657:40313769:40315790:40315933:40318402:40318548,40313657:40313769:40315790:40315933:40319641:40319740,	40315791	40315933	40315884	40315884	Frame_Shift_Del	G	-	p.H204fs
OV	TCGA-24-2260-01	TRIT1	ENST00000537440.1,ENST00000545233.1	chr1	40313657:40313769:40315794:40315933:40318402:40318548,40313657:40313769:40315794:40315933:40319641:40319740,40313657:40313769:40315794:40315933:40348989:40349106,	40315795	40315933	40315884	40315884	Frame_Shift_Del	G	-	p.H204fs
OV	TCGA-24-2267-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577088	7577088	Frame_Shift_Del	T	-	p.T284fs
OV	TCGA-25-1320-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579315	Frame_Shift_Del	G	-	p.C124fs
OV	TCGA-25-1329-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579547	7579547	Frame_Shift_Del	G	-	p.P47fs
OV	TCGA-25-1329-01	CEACAM18	ENST00000396477.4,ENST00000451626.1	chr19	51981875:51981948:51983586:51983934:51984646:51984749,	51983587	51983934	51983818	51983819	Frame_Shift_Del	AC	-	p.N156fs
OV	TCGA-61-2008-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579335	7579336	Frame_Shift_Ins	-	C	p.G117fs
OV	TCGA-61-2101-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579423	7579432	Frame_Shift_Del	GGCTGGTGCA	-	p.P85fs
OV	TCGA-61-1900-01	WDR48	ENST00000418020.1,ENST00000420940.2,ENST00000423296.2	chr3	39093510:39093564:39104540:39104681:39107301:39107380,	39104541	39104681	39104656	39104672	Frame_Shift_Del	GAAATGGATATTTTCAA	-	p.N504fs
OV	TCGA-24-1549-01	GNPAT	ENST00000436239.1,ENST00000366647.4,ENST00000366646.3	chr1	231396252:231396429:231398468:231398598:231401038:231401166,	231398469	231398598	231398535	231398536	Frame_Shift_Del	CT	-	p.L169fs
OV	TCGA-24-1435-01	VSIG2	ENST00000326621.5,ENST00000403470.1	chr11	124619603:124619762:124620609:124620817:124621318:124621476,	124620610	124620817	124620707	124620710	Frame_Shift_Del	GTCA	-	p.D110fs
OV	TCGA-24-0982-01	POSTN	ENST00000473823.1,ENST00000379749.4,ENST00000541179.1	chr13	38137469:38137507:38138655:38138697:38143880:38143927,	38138656	38138697	38138662	38138663	Frame_Shift_Ins	-	T	p.V822fs
OV	TCGA-04-1362-01	TDP1	ENST00000554180.1,ENST00000393454.2	chr14	90422921:90423144:90429451:90430017:90432490:90432534,90422298:90422314:90429451:90430017:90432490:90432534,	90429452	90430017	90429796	90429799	Frame_Shift_Del	AGAA	-	p.K114fs
OV	TCGA-04-1362-01	TDP1	ENST00000553617.1	chr14	90422298:90422314:90429568:90430017:90432490:90432534,	90429569	90430017	90429796	90429799	Frame_Shift_Del	AGAA	-	p.K114fs
OV	TCGA-13-0724-01	CREBBP	ENST00000262367.5,ENST00000382070.3	chr16	3819181:3819354:3820570:3820987:3823751:3823931,	3820571	3820987	3820936	3820942	Frame_Shift_Del	GAGGCCC	-	p.G837fs
OV	TCGA-24-1562-01	NF1	ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29663350:29663491:29663652:29663932:29664385:29664600,	29663653	29663932	29663789	29663790	Frame_Shift_Ins	-	T	p.V2096fs
OV	TCGA-13-1489-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41243753	41243754	Frame_Shift_Ins	-	TT	p.N1265fs
OV	TCGA-13-1497-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574030	7574030	Frame_Shift_Del	G	-	p.R333fs
OV	TCGA-13-1509-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576858	7576858	Frame_Shift_Del	G	-	p.L330fs
OV	TCGA-24-1427-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577124	7577124	Frame_Shift_Del	C	-	p.V272fs
OV	TCGA-04-1343-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578220	7578224	Frame_Shift_Del	TTTCT	-	p.R209fs
OV	TCGA-13-0897-01	CIC	ENST00000572681.2,ENST00000160740.3	chr19	42796237:42796359:42796451:42796618:42796717:42796749,42796237:42796359:42796451:42796618:42796720:42797011,	42796452	42796618	42796462	42796474	Frame_Shift_Del	GTGCAGTCAGCGG	-	p.V1007fs
OV	TCGA-23-1124-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168100320	168100336	Frame_Shift_Del	TAAGGCAAAGTGGTTAT	-	p.K807fs
OV	TCGA-23-1118-01	GGCX	ENST00000233838.4,ENST00000430215.3	chr2	85783340:85783383:85785562:85785728:85786039:85786198,	85785563	85785728	85785630	85785643	Frame_Shift_Del	TCCATGATGTCTTG	-	p.D153fs
OV	TCGA-23-1118-01	GGCX	ENST00000428479.3	chr2	85783340:85783383:85785562:85785785:85786039:85786198,	85785563	85785785	85785630	85785643	Frame_Shift_Del	TCCATGATGTCTTG	-	p.D153fs
OV	TCGA-13-1404-01	DEPDC5	ENST00000266091.3,ENST00000400242.3,ENST00000535622.1,ENST00000382105.2,ENST00000382111.2,ENST00000400249.2,ENST00000536766.1,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32200827:32200901:32202107:32202177:32205596:32205633,	32202108	32202177	32202135	32202159	Frame_Shift_Del	TTGTAATAGTTTCACCCCACGAATA	-	p.F415fs
OV	TCGA-13-1507-01	RPN1	ENST00000296255.3,ENST00000497289.1	chr3	128348793:128348986:128350790:128351000:128356641:128356948,	128350791	128351000	128350847	128350848	Frame_Shift_Ins	-	T	p.R262fs
OV	TCGA-13-1483-01	ZBBX	ENST00000392764.1,ENST00000392766.2,ENST00000392767.2	chr3	167000025:167000283:167016092:167016246:167023430:167023738,	167016093	167016246	167016234	167016240	Frame_Shift_Del	TTTCTTG	-	p.Q578fs
OV	TCGA-04-1348-01	ADH6	ENST00000507484.1,ENST00000407820.2	chr4	100129824:100130085:100131571:100131659:100137317:100137419,	100131572	100131659	100131627	100131630	Frame_Shift_Del	ACTG	ACTG	p.C99fs
OV	TCGA-13-1498-01	FBXL5	ENST00000513163.1,ENST00000507700.1,ENST00000382358.4,ENST00000412094.2,ENST00000511441.1,ENST00000341285.3	chr4	15626874:15627600:15628495:15628578:15629507:15629656,	15628496	15628578	15628522	15628531	Frame_Shift_Del	AGTCTGGGTA	-	p.Q365fs
OV	TCGA-24-1469-01	UBE2K	ENST00000513231.1	chr4	39739039:39739133:39747371:39747430:39757276:39757359,39699947:39700010:39747371:39747430:39757276:39757359,	39747372	39747430	39747381	39747385	Frame_Shift_Del	ACCAA	-	p.Y56fs
OV	TCGA-04-1336-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77661181	77661190	Frame_Shift_Del	TCTTCCAGGC	-	p.S619fs
OV	TCGA-23-1022-01	HPGDS	ENST00000295256.5,ENST00000514774.1	chr4	95229784:95229894:95239023:95239116:95255647:95255789,	95239024	95239116	95239089	95239089	Frame_Shift_Del	A	-	p.L54fs
OV	TCGA-24-1103-01	THBS2	ENST00000366787.3,ENST00000488355.1	chr6	169621524:169621622:169622291:169622563:169623342:169623535,	169622292	169622563	169622375	169622376	Frame_Shift_Ins	-	C	p.S1063fs
OV	TCGA-13-1509-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910330:29910403:29910533:29910803:29911044:29911320,	29910534	29910803	29910582	29910597	Frame_Shift_Del	GCGGGGAGCCCCGCTT	-	p.R41fs
OV	TCGA-10-0933-01	ZFAND2A	ENST00000401903.1	chr7	1191706:1191980:1192708:1192860:1195088:1195220,	1192709	1192860	1192813	1192813	Frame_Shift_Del	C	-	p.M110fs
OV	TCGA-13-0723-01	GRHL2	ENST00000395927.1,ENST00000251808.3	chr8	102564942:102565010:102570646:102571040:102582566:102582622,	102570647	102571040	102570843	102570844	Frame_Shift_Ins	-	T	p.E161fs
OV	TCGA-13-1489-01	ANGPT1	ENST00000520052.1,ENST00000521950.1,ENST00000297450.3	chr8	108306163:108306265:108315467:108315595:108334123:108334356,108306163:108306265:108315467:108315595:108334126:108334217,	108315468	108315595	108315546	108315547	Frame_Shift_Ins	-	TT	p.C286fs
OV	TCGA-04-1336-01	CSMD1	ENST00000519623.1,ENST00000335551.7,ENST00000537824.1,ENST00000602557.1,ENST00000520002.1	chr8	2857500:2857653:2875998:2876172:2886840:2887035,	2875999	2876172	2876120	2876124	Frame_Shift_Del	CGTTC	-	p.W2636fs
OV	TCGA-13-0920-01	SPTAN1	ENST00000372739.3,ENST00000358161.5,ENST00000372731.4	chr9	131348026:131348244:131349884:131349977:131351087:131351222,	131349885	131349977	131349970	131349970	Frame_Shift_Del	C	-	p.C956fs
OV	TCGA-25-1316-01	SLC39A6	ENST00000269187.5,ENST00000590986.1,ENST00000440549.2	chr18	33696636:33696742:33702014:33702233:33703457:33703627,	33702015	33702233	33702138	33702139	Frame_Shift_Del	TA	-	p.I412fs
PAAD	TCGA-IB-A6UF-01	PLCB3	ENST00000279230.6,ENST00000325234.5,ENST00000540288.1	chr11	64030147:64030280:64030969:64031069:64031162:64031267,	64030970	64031069	64031069	64031069	Frame_Shift_Del	G	-	p.S818fs
PAAD	TCGA-XD-AAUL-01	MUTYH	ENST00000482094.1,ENST00000456914.2,ENST00000372100.5,ENST00000372115.3,ENST00000529892.1,ENST00000528332.2,ENST00000372110.3,ENST00000481571.1,ENST00000450313.1,ENST00000533178.1,ENST00000354383.6,ENST00000475516.1,ENST00000467459.1,ENST00000529984.1,ENST00000448481.1,ENST00000372098.3,ENST00000528013.2,ENST00000488731.2,ENST00000372104.1,ENST00000355498.2	chr1	45796187:45796229:45796853:45797006:45797091:45797228,	45796854	45797006	45796949	45796949	Frame_Shift_Del	C	-	p.E461fs
PAAD	TCGA-IB-AAUU-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579320	7579321	Frame_Shift_Ins	-	C	p.T123fs
PAAD	TCGA-FB-A5VM-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579585	7579585	Frame_Shift_Del	G	-	p.L35fs
PAAD	TCGA-2J-AAB8-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150772341:150772595:150772692:150772862:150773099:150773273,	150772693	150772862	150772809	150772810	Frame_Shift_Ins	-	A	p.H1140fs
PAAD	TCGA-2J-AAB8-01	ARHGAP5	ENST00000556611.1,ENST00000432921.1	chr14	32546514:32546641:32586348:32586493:32615468:32615546,32563535:32563592:32586348:32586493:32615468:32615546,	32586349	32586493	32586406	32586406	Frame_Shift_Del	T	-	p.Y1259fs
PAAD	TCGA-2J-AAB8-01	ARHGAP5	ENST00000345122.3,ENST00000539826.2	chr14	32563535:32563592:32586345:32586493:32615468:32615546,	32586346	32586493	32586406	32586406	Frame_Shift_Del	T	-	p.Y1259fs
PAAD	TCGA-YY-A8LH-01	SPATA6L	ENST00000461761.1,ENST00000406861.2,ENST00000454239.2,ENST00000475086.1,ENST00000381895.5,ENST00000486047.1	chr9	4617922:4618110:4618863:4618898:4622407:4622510,	4618864	4618898	4618865	4618865	Frame_Shift_Del	T	-	p.K211fs
PAAD	TCGA-F2-A44H-01	RHBDL3	ENST00000536287.1	chr17	30594920:30594944:30615810:30616035:30621312:30621461,	30615811	30616035	30615948	30615949	Frame_Shift_Ins	-	C	p.L144fs
PAAD	TCGA-XD-AAUG-01	MGME1	ENST00000377709.1	chr20	17950699:17951013:17956326:17956546:17968808:17968941,17950673:17950773:17956326:17956546:17968808:17968941,	17956327	17956546	17956442	17956442	Frame_Shift_Del	C	-	p.V209fs
PAAD	TCGA-IB-7893-01	PRIMA1	ENST00000316227.3,ENST00000393140.1,ENST00000393143.1,ENST00000477603.1	chr14	94203586:94203716:94245521:94245657:94253971:94254095,	94245522	94245657	94245571	94245574	Frame_Shift_Del	CAGC	-	p.60_61del
PAAD	TCGA-2J-AABK-01	CTNND1	ENST00000361332.4,ENST00000399050.4,ENST00000530094.1,ENST00000527467.1,ENST00000415361.2,ENST00000526357.1,ENST00000532844.1,ENST00000531014.1	chr11	57581782:57581845:57582865:57582972:57583768:57584189,57581782:57581845:57582865:57582972:57583386:57583473,	57582866	57582972	57582920	57582920	Frame_Shift_Del	G	-	p.R919fs
PAAD	TCGA-IB-7651-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21441609:21441771:21444748:21444847:21447797:21447881,	21444749	21444847	21444821	21444822	Frame_Shift_Ins	-	A	p.E1553fs
PAAD	TCGA-IB-7651-01	RAP1B	ENST00000540209.1	chr12	69042485:69042561:69044179:69044248:69047891:69047962,	69044180	69044248	69044201	69044202	Frame_Shift_Ins	-	T	p.I27fs
PAAD	TCGA-IB-7651-01	FAM120A	ENST00000333936.5,ENST00000340893.4,ENST00000427765.1,ENST00000277165.6	chr9	96312858:96312973:96318663:96318873:96320108:96320292,	96318664	96318873	96318839	96318839	Frame_Shift_Del	A	-	p.E817fs
PAAD	TCGA-IB-7651-01	PPID	ENST00000307720.3,ENST00000512699.1	chr4	159634270:159634412:159636448:159636555:159636713:159636820,	159636449	159636555	159636465	159636466	Frame_Shift_Ins	-	T	p.Y246fs
PAAD	TCGA-IB-7651-01	MEF2A	ENST00000354410.5	chr15	100173182:100173378:100185765:100185969:100211527:100211659,100173182:100173378:100185765:100185969:100211724:100211862,	100185766	100185969	100185786	100185787	Frame_Shift_Ins	-	T	p.K25fs
PAAD	TCGA-IB-7651-01	DLG2	ENST00000537455.1,ENST00000398309.2,ENST00000524982.1,ENST00000330014.6,ENST00000398301.2,ENST00000543673.1,ENST00000529111.1,ENST00000532653.1,ENST00000280241.8,ENST00000376106.3,ENST00000376104.2,ENST00000531015.1	chr11	83585462:83585531:83641370:83641526:83673927:83674066,	83641371	83641526	83641454	83641455	Frame_Shift_Ins	-	T	p.P471fs
PAAD	TCGA-IB-7651-01	MAMSTR	ENST00000356751.4,ENST00000419611.1,ENST00000318083.6	chr19	49217116:49217302:49218062:49218165:49218518:49218703,49217622:49217817:49218062:49218165:49218518:49218703,	49218063	49218165	49218106	49218106	Frame_Shift_Del	G	-	p.P162fs
PAAD	TCGA-IB-7651-01	MMP9	ENST00000372330.3	chr20	44640775:44640952:44641065:44641221:44641893:44642022,	44641066	44641221	44641175	44641176	Frame_Shift_Ins	-	C	p.G428fs
PAAD	TCGA-IB-7651-01	MS4A15	ENST00000429322.2	chr11	60524480:60524531:60531178:60531431:60535005:60535128,60524480:60524531:60531178:60531431:60535039:60535128,	60531179	60531431	60531345	60531346	Frame_Shift_Ins	-	G	p.L47fs
PAAD	TCGA-IB-7651-01	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74014994:74015141:74015608:74015734:74017548:74017644,	74015609	74015734	74015643	74015643	Frame_Shift_Del	G	-	p.P368fs
PAAD	TCGA-IB-7651-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106134	168106135	Frame_Shift_Ins	-	A	p.T2744fs
PAAD	TCGA-IB-7651-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073231	197073232	Frame_Shift_Ins	-	T	p.I1717fs
PAAD	TCGA-IB-7651-01	PPP2R5A	ENST00000479259.1	chr1	212480124:212480242:212502476:212502673:212506838:212506940,	212502477	212502673	212502503	212502504	Frame_Shift_Ins	-	T	p.L70fs
PAAD	TCGA-IB-7651-01	DCTN4	ENST00000446090.2	chr5	150133040:150133219:150135978:150136049:150138420:150138582,	150135979	150136049	150136014	150136015	Frame_Shift_Ins	-	T	p.N57fs
PAAD	TCGA-IB-7651-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14474120:14474206:14477002:14477072:14479369:14479459,	14477003	14477072	14477004	14477004	Frame_Shift_Del	T	-	p.D2028fs
PAAD	TCGA-IB-7651-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31600291:31600769:31601155:31601424:31601635:31601766,	31601156	31601424	31601175	31601175	Frame_Shift_Del	C	-	p.R1446fs
PAAD	TCGA-IB-7651-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.R265fs
PAAD	TCGA-2L-AAQJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562544	32562545	Frame_Shift_Ins	-	T	p.D890fs
PAAD	TCGA-FB-AAQ3-01	HPSE2	ENST00000370552.3,ENST00000370546.1	chr10	100481413:100481585:100503639:100503813:100903994:100904156,	100503640	100503813	100503755	100503755	Frame_Shift_Del	A	-	p.A224fs
PAAD	TCGA-IB-7649-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971010	21971026	Frame_Shift_Del	GTCCACGGGCAGACGGC	-	p.126_131del
PAAD	TCGA-IB-7649-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971010	21971026	Frame_Shift_Del	GTCCACGGGCAGACGGC	-	p.126_131del
PAAD	TCGA-IB-7886-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579518	7579519	Frame_Shift_Ins	-	TT	p.D57fs
PAAD	TCGA-IB-7886-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593481	48593482	Frame_Shift_Ins	-	T	p.S411fs
PAAD	TCGA-2J-AAB6-01	C5	ENST00000223642.1	chr9	123783786:123783972:123785681:123785797:123787731:123787858,	123785682	123785797	123785771	123785772	Frame_Shift_Ins	-	T	p.P343fs
PAAD	TCGA-IB-AAUT-01	TLK2	ENST00000326270.9,ENST00000346027.5,ENST00000582809.1	chr17	60600494:60600538:60613530:60613698:60629662:60629700,60601596:60601692:60613530:60613698:60629662:60629700,	60613531	60613698	60613640	60613640	Frame_Shift_Del	G	-	p.R158fs
PAAD	TCGA-FB-AAQ1-01	MYRF	ENST00000278836.5	chr11	61548628:61548801:61549044:61549296:61550984:61551017,61548609:61548801:61549044:61549296:61550969:61551072,	61549045	61549296	61549225	61549226	Frame_Shift_Ins	-	C	p.G982fs
PAAD	TCGA-FB-AAQ1-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.V73fs
PAAD	TCGA-HZ-8636-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50235492:50235582:50238612:50238711:50241730:50241901,	50238613	50238711	50238628	50238635	Frame_Shift_Del	GATGTCTT	-	p.698_701del
PAAD	TCGA-F2-A8YN-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578180	7578190	Frame_Shift_Del	AGGCGGCTCAT	-	p.220_224del
PAAD	TCGA-IB-A7LX-01	PRC1	ENST00000394249.3,ENST00000557763.1,ENST00000361188.5,ENST00000553494.1,ENST00000361919.3	chr15	91525138:91525211:91527247:91527370:91537636:91537725,91525138:91525211:91527247:91527370:91527922:91528055,	91527248	91527370	91527307	91527308	Frame_Shift_Ins	-	T	p.S70fs
PAAD	TCGA-IB-A7LX-01	PRC1	ENST00000555791.1	chr15	91525138:91525211:91527135:91527370:91527922:91528055,	91527136	91527370	91527307	91527308	Frame_Shift_Ins	-	T	p.S70fs
PAAD	TCGA-IB-AAUN-01	MBD1	ENST00000424334.2,ENST00000349085.2,ENST00000585595.1,ENST00000353909.3,ENST00000589541.1,ENST00000347968.3,ENST00000269468.5,ENST00000436910.1	chr18	47793976:47794033:47797838:47797910:47799046:47799108,47796107:47796188:47797838:47797910:47799046:47799108,	47797839	47797910	47797907	47797914	Frame_Shift_Del	GGACCTAG	-	p.618_620del
PAAD	TCGA-HZ-A8P1-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15884764:15884894:15889212:15889362:15893470:15893542,	15889213	15889362	15889230	15889230	Frame_Shift_Del	C	-	p.A156fs
PAAD	TCGA-HZ-A8P1-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492911	56492942	Frame_Shift_Del	CCAGCTGCAGCTGGTGGCCACCACTCATGCTA	-	.
PAAD	TCGA-HZ-8005-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971143	21971144	Frame_Shift_Ins	-	A	p.L86fs
PAAD	TCGA-HZ-8005-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971143	21971144	Frame_Shift_Ins	-	A	p.L86fs
PAAD	TCGA-HZ-8005-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71068205:71069475:71071739:71071887:71074945:71075089,	71071740	71071887	71071800	71071803	Frame_Shift_Del	AGTT	-	p.354_355del
PAAD	TCGA-2L-AAQA-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492904	56492908	Frame_Shift_Del	AGGGC	-	p.11_12del
PAAD	TCGA-HZ-7922-01	CGNL1	ENST00000281282.5	chr15	57820851:57821013:57823887:57823977:57835893:57835977,	57823888	57823977	57823890	57823890	Frame_Shift_Del	C	-	p.D1068fs
PAAD	TCGA-S4-A8RO-01	TMIGD2	ENST00000301272.2	chr19	4294771:4294813:4297982:4298342:4302336:4302382,	4297983	4298342	4298112	4298113	Frame_Shift_Ins	-	G	p.S93fs
PAAD	TCGA-S4-A8RO-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562533	145562534	Frame_Shift_Ins	-	G	p.R741fs
PAAD	TCGA-HZ-A8P0-01	NOL6	ENST00000297990.4,ENST00000455041.2,ENST00000379470.1	chr9	33462594:33462811:33463030:33463132:33463244:33463435,	33463031	33463132	33463120	33463120	Frame_Shift_Del	C	-	p.D1068fs
PAAD	TCGA-HZ-8519-01	PLXNA1	ENST00000393409.2,ENST00000251772.4	chr3	126736591:126736735:126737136:126737371:126739044:126739187,	126737137	126737371	126737232	126737233	Frame_Shift_Ins	-	G	p.G1252fs
PAAD	TCGA-2J-AABO-01	USP8	ENST00000561211.1,ENST00000559242.1	chr15	50733545:50733690:50741596:50741682:50751196:50751267,50731239:50731374:50741596:50741682:50751196:50751267,	50741597	50741682	50741645	50741645	Frame_Shift_Del	G	-	p.V99fs
PAAD	TCGA-YB-A89D-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Frame_Shift_Del	C	-	p.G102fs
PAAD	TCGA-YB-A89D-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Frame_Shift_Del	C	-	p.G102fs
PAAD	TCGA-IB-7889-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000456652.1,ENST00000350198.4,ENST00000427603.1,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102314542:102314599:102314934:102315000:102407181:102407238,	102314935	102315000	102314997	102314998	Frame_Shift_Ins	-	A	p.Y40fs
PAAD	TCGA-IB-7889-01	GOLGA2	ENST00000609374.1,ENST00000421699.2	chr9	131022404:131022468:131022743:131023081:131023450:131023538,	131022744	131023081	131022880	131022881	Frame_Shift_Ins	-	A	p.W514fs
PAAD	TCGA-3A-A9J0-01	ARSK	ENST00000504873.1,ENST00000513814.1,ENST00000380009.4	chr5	94918619:94918902:94922265:94922437:94927104:94927329,	94922266	94922437	94922345	94922346	Frame_Shift_Ins	-	A	p.T260fs
PAAD	TCGA-IB-7647-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229287	7229288	Frame_Shift_Ins	-	ACAC	p.D319fs
PAAD	TCGA-3A-A9IH-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971095	21971096	Frame_Shift_Ins	-	CC	p.G102fs
PAAD	TCGA-3A-A9IH-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971095	21971096	Frame_Shift_Ins	-	CC	p.G102fs
PAAD	TCGA-HV-AA8X-01	SUPT6H	ENST00000347486.4,ENST00000314616.6	chr17	27027363:27027530:27027958:27028146:27028456:27028557,	27027959	27028146	27028143	27028144	Frame_Shift_Ins	-	AA	p.P1664fs
PAAD	TCGA-HV-AA8X-01	RAB3A	ENST00000222256.4	chr19	18309534:18309659:18311136:18311255:18313322:18313550,	18311137	18311255	18311123	18311151	Frame_Shift_Del	TGGGGTACACTCACCAGTCCTGCACTGCA	-	p.112_116del
PAAD	TCGA-IB-A5SP-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7230570	7230570	Frame_Shift_Del	C	-	p.D746fs
PAAD	TCGA-IB-A5SP-01	GNPDA2	ENST00000507917.1	chr4	44720329:44720427:44724100:44724259:44728490:44728540,44719129:44719312:44724100:44724259:44728490:44728540,	44724101	44724259	44724119	44724120	Frame_Shift_Ins	-	A	p.T36fs
PAAD	TCGA-LB-A8F3-01	WDFY3	ENST00000295888.4,ENST00000322366.6	chr4	85676418:85676553:85678078:85678314:85686962:85687180,	85678079	85678314	85678099	85678099	Frame_Shift_Del	G	-	p.R1802fs
PAAD	TCGA-LB-A8F3-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469543	21469544	Frame_Shift_Ins	-	T	p.V254fs
PAAD	TCGA-OE-A75W-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835972	82835973	Frame_Shift_Ins	-	G	p.K2384fs
PAAD	TCGA-3A-A9IU-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579471	7579471	Frame_Shift_Del	G	-	p.V73fs
PAAD	TCGA-PZ-A5RE-01	PPP2R5C	ENST00000445439.3,ENST00000334743.5,ENST00000557095.1,ENST00000328724.5,ENST00000557268.1,ENST00000556218.1,ENST00000350249.3,ENST00000422945.2	chr14	102349616:102349686:102349768:102349899:102356573:102356633,	102349769	102349899	102349889	102349890	Frame_Shift_Ins	-	T	p.I262fs
PAAD	TCGA-FB-A545-01	KLF4	ENST00000374672.4	chr9	110249308:110249473:110249575:110250548:110251210:110251327,	110249576	110250548	110249719	110249720	Frame_Shift_Ins	-	G	p.L319fs
PAAD	TCGA-US-A776-01	PAQR6	ENST00000356983.2,ENST00000335852.1,ENST00000292291.5,ENST00000492619.1,ENST00000540423.1,ENST00000468632.1,ENST00000368270.1	chr1	156215007:156215068:156215325:156215452:156215572:156215586,156214932:156215029:156215325:156215452:156215572:156215586,	156215326	156215452	156215327	156215327	Frame_Shift_Del	G	-	p.R171fs
PAAD	TCGA-IB-7888-01	SNUPN	ENST00000569817.1,ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75897539:75897568:75899556:75899654:75901898:75901992,	75899557	75899654	75899572	75899573	Frame_Shift_Ins	-	G	p.P195fs
PAAD	TCGA-HZ-7926-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577035	7577036	Frame_Shift_Ins	-	G	p.P301fs
PAAD	TCGA-HZ-7926-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971003	21971004	Frame_Shift_Ins	-	A	p.E119_E120delinsX
PAAD	TCGA-HZ-7926-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971003	21971004	Frame_Shift_Ins	-	A	p.E119_E120delinsX
PAAD	TCGA-HZ-7926-01	PLA2R1	ENST00000283243.7,ENST00000392771.1	chr2	160840438:160840584:160843666:160843869:160862162:160862332,	160843667	160843869	160843751	160843751	Frame_Shift_Del	T	-	p.K652fs
PAAD	TCGA-IB-7646-01	MYO16	ENST00000457511.2,ENST00000375857.2,ENST00000251041.5,ENST00000357550.2,ENST00000356711.2	chr13	109644723:109644796:109661244:109661397:109672058:109672259,	109661245	109661397	109661386	109661386	Frame_Shift_Del	T	-	p.D861fs
PAAD	TCGA-2J-AABU-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61315174:61315438:61345108:61345234:61391748:61392030,	61345109	61345234	61345105	61345116	Frame_Shift_Del	TCAGCCACCAGC	-	p.271_273del
PAAD	TCGA-2J-AABU-01	SMYD3	ENST00000541742.1,ENST00000391836.2,ENST00000470510.1,ENST00000490107.1,ENST00000492487.1,ENST00000464398.1,ENST00000493441.1,ENST00000388985.4,ENST00000366516.1,ENST00000366517.1	chr1	246027110:246027188:246078831:246078942:246091232:246091335,	246078832	246078942	246078893	246078893	Frame_Shift_Del	T	-	p.K251fs
PAAD	TCGA-FB-A78T-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971143	21971152	Frame_Shift_Del	CAGTTGGGCT	-	p.84_87del
PAAD	TCGA-FB-A78T-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971143	21971152	Frame_Shift_Del	CAGTTGGGCT	-	p.84_87del
PAAD	TCGA-2J-AAB1-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324564	27324565	Frame_Shift_Ins	-	T	p.E939fs
PAAD	TCGA-2J-AAB1-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919654	57919666	Frame_Shift_Del	GGGGCCCCTGGGA	-	p.301_305del
PAAD	TCGA-3A-A9IC-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579321	7579322	Frame_Shift_Del	CA	-	p.122_123del
PAAD	TCGA-XD-AAUI-01	MLXIP	ENST00000538698.1,ENST00000366272.2,ENST00000319080.7	chr12	122622740:122622842:122622970:122623098:122623361:122623485,	122622971	122623098	122623075	122623075	Frame_Shift_Del	C	-	p.I787fs
PAAD	TCGA-IB-AAUO-01	NFKBIZ	ENST00000326172.5,ENST00000394054.2,ENST00000326151.5,ENST00000483180.1	chr3	101574576:101574746:101575916:101576027:101576135:101576303,	101575917	101576027	101575980	101575980	Frame_Shift_Del	C	-	p.I629fs
PAAD	TCGA-LB-A7SX-01	COG3	ENST00000349995.5	chr13	46053139:46053201:46054259:46054425:46055364:46055439,	46054260	46054425	46054424	46054425	Frame_Shift_Ins	-	G	p.Q183fs
PAAD	TCGA-IB-7652-01	ARCN1	ENST00000264028.4	chr11	118443167:118443265:118451960:118452224:118453893:118454073,	118451961	118452224	118451977	118452014	Frame_Shift_Del	CGGTCTGCACAAAAGCAGGAAAGGCTATTGTTTCTCGA	-	p.7_19del
PAAD	TCGA-IB-7652-01	RASSF2	ENST00000478553.1,ENST00000379376.2,ENST00000379400.3	chr20	4768862:4768914:4770241:4770343:4771096:4771257,	4770242	4770343	4770321	4770339	Frame_Shift_Del	TAGGCTGGTGTGAACACGG	-	p.181_187del
PAAD	TCGA-IB-7652-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000471363.1,ENST00000490478.1	chr3	55018634:55018697:55021709:55021780:55038789:55038865,	55021710	55021780	55021718	55021719	Frame_Shift_Del	CT	-	p.876_876del
PAAD	TCGA-HV-A5A6-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Frame_Shift_Del	G	-	p.R342fs
PAAD	TCGA-IB-A5SS-01	NSF	ENST00000575068.1,ENST00000486366.1,ENST00000398238.4,ENST00000571172.1	chr17	44701609:44701695:44703978:44704078:44707776:44707816,	44703979	44704078	44704019	44704019	Frame_Shift_Del	T	-	p.T46fs
PAAD	TCGA-IB-A5SS-01	LRIG3	ENST00000379141.4,ENST00000433272.2,ENST00000320743.3	chr12	59276650:59276814:59277301:59277373:59279612:59279684,	59277302	59277373	59277344	59277344	Frame_Shift_Del	A	-	p.L425fs
PAAD	TCGA-2J-AABH-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579503	7579503	Frame_Shift_Del	C	-	p.E62fs
PAAD	TCGA-IB-7897-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.M75fs
PAAD	TCGA-HZ-8315-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680350	18680350	Frame_Shift_Del	G	-	p.G395fs
PAAD	TCGA-HZ-8315-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67302911	67302912	Frame_Shift_Ins	-	T	p.K248fs
PAAD	TCGA-HZ-8636-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796799	7796800	Frame_Shift_Ins	-	C	p.L295fs
PAAD	TCGA-HZ-8636-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50235492:50235582:50238612:50238711:50241730:50241901,	50238613	50238711	50238628	50238635	Frame_Shift_Del	GATGTCTT	-	p.QDI698fs
PAAD	TCGA-IB-7888-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
PAAD	TCGA-IB-7888-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875737	4875738	Frame_Shift_Ins	-	G	p.R865fs
PAAD	TCGA-IB-7893-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
PAAD	TCGA-IB-7893-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.M75fs
PAAD	TCGA-IB-7893-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
PAAD	TCGA-IB-7893-01	FNBP1	ENST00000478129.1	chr9	132671168:132671278:132687238:132687436:132689473:132689506,	132687239	132687436	132687243	132687243	Frame_Shift_Del	T	-	p.N328fs
PAAD	TCGA-IB-7893-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6412853	6412854	Frame_Shift_Ins	-	C	p.PP186fs
PAAD	TCGA-US-A774-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-US-A774-01	FNBP1	ENST00000478129.1	chr9	132671168:132671278:132687238:132687436:132689473:132689506,	132687239	132687436	132687243	132687243	Frame_Shift_Del	T	-	p.N328fs
PAAD	TCGA-IB-AAUP-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
PAAD	TCGA-IB-AAUP-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579316	Frame_Shift_Ins	-	C	p.Y124fs
PAAD	TCGA-IB-8127-01	PPP2R3C	ENST00000557278.1,ENST00000555644.1,ENST00000555630.1,ENST00000261475.5,ENST00000554563.1,ENST00000557773.1,ENST00000554361.1,ENST00000556254.1	chr14	35579730:35579835:35585815:35585943:35591107:35591155,	35585816	35585943	35585935	35585935	Frame_Shift_Del	T	-	p.S23fs
PAAD	TCGA-2J-AABU-01	SMYD3	ENST00000541742.1,ENST00000391836.2,ENST00000470510.1,ENST00000490107.1,ENST00000492487.1,ENST00000464398.1,ENST00000493441.1,ENST00000388985.4,ENST00000366516.1,ENST00000366517.1	chr1	246027110:246027188:246078831:246078942:246091232:246091335,	246078832	246078942	246078893	246078893	Frame_Shift_Del	T	-	p.K192fs
PAAD	TCGA-2J-AABU-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
PAAD	TCGA-3A-A9IH-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-3A-A9IO-01	NPRL2	ENST00000232501.3,ENST00000476064.1,ENST00000487632.1,ENST00000461020.1,ENST00000479512.1	chr3	50385189:50385332:50385554:50385672:50385747:50385841,	50385555	50385672	50385605	50385623	Frame_Shift_Del	CACGGTAGTGCCAGGGCTC	-	p.LSPGTTV288fs
PAAD	TCGA-3A-A9IO-01	ACOX2	ENST00000489472.1	chr3	58512231:58512383:58514520:58514683:58516977:58517093,	58514521	58514683	58514557	58514558	Frame_Shift_Del	AG	-	p.T373fs
PAAD	TCGA-3A-A9IO-01	LOXL2	ENST00000389131.3	chr8	23160794:23160910:23167180:23167424:23174461:23174627,	23167181	23167424	23167294	23167294	Frame_Shift_Del	G	-	p.P589fs
PAAD	TCGA-3A-A9IO-01	ITGB4	ENST00000200181.3	chr17	73748599:73748658:73749845:73750055:73750656:73750896,	73749846	73750055	73750045	73750046	Frame_Shift_Ins	-	C	p.GP1436fs
PAAD	TCGA-FB-AAPP-01	MAP3K5	ENST00000355845.4,ENST00000359015.4	chr6	136883640:136883753:136888768:136889012:136901438:136901544,	136888769	136889012	136888858	136888859	Frame_Shift_Ins	-	CTCA	p.N1224fs
PAAD	TCGA-FB-AAPP-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-FB-AAPP-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492756	56492757	Frame_Shift_Del	CA	-	p.L61fs
PAAD	TCGA-HZ-7289-01	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16674961:16675259:16676139:16676263:16680055:16680213,	16676140	16676263	16676227	16676227	Frame_Shift_Del	A	-	p.Y1527fs
PAAD	TCGA-HZ-7289-01	RAD23B	ENST00000442587.1,ENST00000419616.1,ENST00000416373.2,ENST00000358015.3	chr9	110062421:110062503:110064315:110064395:110068659:110068734,	110064316	110064395	110064366	110064366	Frame_Shift_Del	A	-	p.K67fs
PAAD	TCGA-HZ-7289-01	TLE3	ENST00000558201.1,ENST00000558379.1,ENST00000442299.2,ENST00000558939.1,ENST00000557919.1,ENST00000560525.1,ENST00000560589.1,ENST00000539550.1,ENST00000559048.1,ENST00000559929.1,ENST00000560939.1,ENST00000557907.1,ENST00000451782.2,ENST00000561453.1,ENST00000557997.1,ENST00000440567.3,ENST00000317509.8	chr15	70350524:70350630:70351001:70351154:70351748:70351799,	70351002	70351154	70351067	70351068	Frame_Shift_Ins	-	G	p.Q285fs
PAAD	TCGA-HV-AA8X-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PAAD	TCGA-HV-AA8X-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PAAD	TCGA-HV-AA8X-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060674	56060674	Frame_Shift_Del	A	-	p.P29fs
PAAD	TCGA-HV-AA8X-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A94fs
PAAD	TCGA-HZ-A49H-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-HZ-A49H-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-IB-7644-01	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785730	28785730	Frame_Shift_Del	A	-	p.K53fs
PAAD	TCGA-IB-7644-01	PABPC1	ENST00000519100.1,ENST00000318607.5,ENST00000519622.1,ENST00000519596.1,ENST00000519004.1,ENST00000522387.1	chr8	101724609:101724685:101724879:101725017:101725314:101725409,	101724880	101725017	101724994	101724995	Frame_Shift_Ins	-	A	p.R254fs
PAAD	TCGA-IB-7652-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000471363.1,ENST00000490478.1	chr3	55018634:55018697:55021709:55021780:55038789:55038865,	55021710	55021780	55021718	55021719	Frame_Shift_Del	CT	-	p.DF876fs
PAAD	TCGA-IB-7652-01	RASSF2	ENST00000478553.1,ENST00000379376.2,ENST00000379400.3	chr20	4768862:4768914:4770241:4770343:4771096:4771257,	4770242	4770343	4770321	4770339	Frame_Shift_Del	TAGGCTGGTGTGAACACGG	-	p.SVFTPAY181fs
PAAD	TCGA-HV-A5A5-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
PAAD	TCGA-HV-A5A5-01	AGAP3	ENST00000463381.1	chr7	150825682:150825771:150831486:150831655:150838984:150839139,	150831487	150831655	150831565	150831566	Frame_Shift_Ins	-	G	p.S469fs
PAAD	TCGA-HV-A5A5-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-F2-A7TX-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
PAAD	TCGA-F2-A7TX-01	KMT2E	ENST00000334914.7,ENST00000257745.4,ENST00000334884.5,ENST00000334877.4,ENST00000311117.3	chr7	104742332:104742641:104745885:104746140:104746305:104746402,	104745886	104746140	104746087	104746088	Frame_Shift_Ins	-	A	p.K800fs
PAAD	TCGA-HZ-7920-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
PAAD	TCGA-HZ-7920-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-HZ-7920-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635951	32635951	Frame_Shift_Del	T	-	p.N638fs
PAAD	TCGA-F2-A44G-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-F2-A44G-01	MED14	ENST00000324817.1	chrX	40534472:40534613:40539115:40539385:40540009:40540157,	40539116	40539385	40539348	40539348	Frame_Shift_Del	T	-	p.N883fs
PAAD	TCGA-FB-AAPS-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PAAD	TCGA-FB-AAPS-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PAAD	TCGA-FB-AAPS-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-FB-AAPS-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-HZ-8005-01	NCOA2	ENST00000452400.2,ENST00000518287.2	chr8	71068205:71069475:71071739:71071887:71074945:71075089,	71071740	71071887	71071800	71071803	Frame_Shift_Del	AGTT	-	p.KL354fs
PAAD	TCGA-HZ-8005-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971143	21971144	Frame_Shift_Ins	-	A	p.P86fs
PAAD	TCGA-HZ-8005-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971143	21971144	Frame_Shift_Ins	-	A	p.P86fs
PAAD	TCGA-2J-AABI-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578199	7578200	Frame_Shift_Ins	-	CC	p.G217fs
PAAD	TCGA-FB-A78T-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971143	21971152	Frame_Shift_Del	CAGTTGGGCT	-	p.GAQL83fs
PAAD	TCGA-FB-A78T-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971143	21971152	Frame_Shift_Del	CAGTTGGGCT	-	p.GAQL83fs
PAAD	TCGA-FB-A78T-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-HZ-7926-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
PAAD	TCGA-HZ-7926-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647319	145647320	Frame_Shift_Ins	-	A	p.LK813fs
PAAD	TCGA-HZ-7926-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971003	21971004	Frame_Shift_Ins	-	A	p.G119fs
PAAD	TCGA-HZ-7926-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971003	21971004	Frame_Shift_Ins	-	A	p.G119fs
PAAD	TCGA-HZ-7926-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577035	7577036	Frame_Shift_Ins	-	G	p.R301fs
PAAD	TCGA-HZ-7926-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-HZ-A4BH-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
PAAD	TCGA-HZ-A4BH-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
PAAD	TCGA-HZ-A4BH-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-HV-A7OL-01	THOC1	ENST00000579891.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6	chr18	224923:224994:225088:225139:225336:225403,	225089	225139	225118	225119	Frame_Shift_Ins	-	G	p.W370fs
PAAD	TCGA-2J-AAB8-01	SLC4A2	ENST00000413384.2,ENST00000461735.1,ENST00000485713.1,ENST00000310317.5,ENST00000392826.2	chr7	150772341:150772595:150772692:150772862:150773099:150773273,	150772693	150772862	150772809	150772810	Frame_Shift_Ins	-	A	p.S1140fs
PAAD	TCGA-2J-AAB8-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
PAAD	TCGA-2J-AAB8-01	ARHGAP5	ENST00000556611.1,ENST00000432921.1	chr14	32546514:32546641:32586348:32586493:32615468:32615546,32563535:32563592:32586348:32586493:32615468:32615546,	32586349	32586493	32586406	32586406	Frame_Shift_Del	T	-	p.F1260fs
PAAD	TCGA-2J-AAB8-01	ARHGAP5	ENST00000345122.3,ENST00000539826.2	chr14	32563535:32563592:32586345:32586493:32615468:32615546,	32586346	32586493	32586406	32586406	Frame_Shift_Del	T	-	p.F1260fs
PAAD	TCGA-HZ-7919-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-LB-A9Q5-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-LB-A9Q5-01	C20orf194	ENST00000252032.9,ENST00000453730.2	chr20	3234371:3234465:3235864:3235930:3236651:3236857,	3235865	3235930	3235916	3235916	Frame_Shift_Del	T	-	p.K1092fs
PAAD	TCGA-IB-7889-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000456652.1,ENST00000350198.4,ENST00000427603.1,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102314542:102314599:102314934:102315000:102407181:102407238,	102314935	102315000	102314997	102314998	Frame_Shift_Ins	-	A	p.G41fs
PAAD	TCGA-IB-7889-01	GOLGA2	ENST00000609374.1,ENST00000421699.2	chr9	131022404:131022468:131022743:131023081:131023450:131023538,	131022744	131023081	131022880	131022881	Frame_Shift_Ins	-	A	p.G514fs
PAAD	TCGA-IB-7889-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412696	77412696	Frame_Shift_Del	T	-	p.K526fs
PAAD	TCGA-HV-A5A4-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-FZ-5921-01	ATP8B4	ENST00000559726.1,ENST00000561104.1,ENST00000284509.6,ENST00000559829.1,ENST00000558906.1	chr15	50190342:50190448:50193288:50193436:50209130:50209236,	50193289	50193436	50193367	50193368	Frame_Shift_Ins	-	T	p.T737fs
PAAD	TCGA-IB-7651-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
PAAD	TCGA-IB-7651-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073231	197073232	Frame_Shift_Ins	-	T	p.S1717fs
PAAD	TCGA-IB-7651-01	PPP2R5A	ENST00000479259.1	chr1	212480124:212480242:212502476:212502673:212506838:212506940,	212502477	212502673	212502503	212502504	Frame_Shift_Ins	-	T	p.F70fs
PAAD	TCGA-IB-7651-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106134	168106135	Frame_Shift_Ins	-	A	p.TK2744fs
PAAD	TCGA-IB-7651-01	ITIH4	ENST00000434759.3,ENST00000537897.1,ENST00000491663.1	chr3	52853408:52853534:52853769:52854006:52854306:52854333,	52853770	52854006	52853933	52853933	Frame_Shift_Del	C	-	p.G557fs
PAAD	TCGA-IB-7651-01	PPID	ENST00000307720.3,ENST00000512699.1	chr4	159634270:159634412:159636448:159636555:159636713:159636820,	159636449	159636555	159636465	159636466	Frame_Shift_Ins	-	T	p.C246fs
PAAD	TCGA-IB-7651-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31600291:31600769:31601155:31601424:31601635:31601766,	31601156	31601424	31601175	31601175	Frame_Shift_Del	C	-	p.P1448fs
PAAD	TCGA-IB-7651-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72903523:72903721:72907129:72907251:72912826:72913028,	72907130	72907251	72907202	72907202	Frame_Shift_Del	T	-	p.K207fs
PAAD	TCGA-IB-7651-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.LK72fs
PAAD	TCGA-IB-7651-01	MS4A15	ENST00000429322.2	chr11	60524480:60524531:60531178:60531431:60535005:60535128,60524480:60524531:60531178:60531431:60535039:60535128,	60531179	60531431	60531345	60531346	Frame_Shift_Ins	-	G	p.G47fs
PAAD	TCGA-IB-7651-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.G265fs
PAAD	TCGA-IB-7651-01	RAP1B	ENST00000540209.1	chr12	69042485:69042561:69044179:69044248:69047891:69047962,	69044180	69044248	69044201	69044202	Frame_Shift_Ins	-	T	p.F27fs
PAAD	TCGA-IB-7651-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074771	31074772	Frame_Shift_Ins	-	A	p.IK357fs
PAAD	TCGA-IB-7651-01	MEF2A	ENST00000354410.5	chr15	100173182:100173378:100185765:100185969:100211527:100211659,100173182:100173378:100185765:100185969:100211724:100211862,	100185766	100185969	100185786	100185787	Frame_Shift_Ins	-	T	p.W26fs
PAAD	TCGA-IB-7651-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21441609:21441771:21444748:21444847:21447797:21447881,	21444749	21444847	21444821	21444822	Frame_Shift_Ins	-	A	p.K1553fs
PAAD	TCGA-IB-7651-01	MMP9	ENST00000372330.3	chr20	44640775:44640952:44641065:44641221:44641893:44642022,	44641066	44641221	44641175	44641176	Frame_Shift_Ins	-	C	p.GP428fs
PAAD	TCGA-XN-A8T5-01	RREB1	ENST00000379938.2,ENST00000483150.1,ENST00000379933.3,ENST00000349384.6,ENST00000334984.6	chr6	7211805:7211942:7226699:7226889:7229229:7230666,	7226700	7226889	7226828	7226829	Frame_Shift_Ins	-	TG	p.G279fs
PAAD	TCGA-US-A77J-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074771	31074772	Frame_Shift_Ins	-	A	p.IK357fs
PAAD	TCGA-3A-A9IB-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
PAAD	TCGA-3A-A9IB-01	TNFRSF10A	ENST00000221132.3	chr8	23049326:23049526:23054644:23054717:23056778:23056961,	23054645	23054717	23054679	23054701	Frame_Shift_Del	CAGCCTCCTCCTCTGAGACCCTT	-	p.EGSQRRRL344fs
PAAD	TCGA-H8-A6C1-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579716	7579716	Frame_Shift_Del	G	-	p.P27fs
PAAD	TCGA-2J-AABT-01	ARHGAP10	ENST00000506054.1,ENST00000336498.3,ENST00000506020.1	chr4	148968042:148968202:148984298:148984451:148985566:148985658,	148984299	148984451	148984411	148984411	Frame_Shift_Del	T	-	p.F714fs
PAAD	TCGA-2J-AABT-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578213	Frame_Shift_Del	A	-	p.F212fs
PAAD	TCGA-FB-A5VM-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
PAAD	TCGA-FB-A5VM-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-FB-A5VM-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149853	39149853	Frame_Shift_Del	C	-	p.A533fs
PAAD	TCGA-FB-A5VM-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074771	31074772	Frame_Shift_Ins	-	A	p.IK357fs
PAAD	TCGA-FB-A5VM-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579585	7579585	Frame_Shift_Del	G	-	p.P34fs
PAAD	TCGA-HV-A5A6-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-HV-A5A6-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A94fs
PAAD	TCGA-IB-8126-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149853	39149853	Frame_Shift_Del	C	-	p.A533fs
PAAD	TCGA-HZ-8637-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-HZ-8637-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
PAAD	TCGA-HZ-8637-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-IB-A6UG-01	KIR2DL4	ENST00000463062.1	chr19	55320287:55320338:55324579:55324683:55325144:55325197,55317405:55317699:55324579:55324683:55325144:55325197,	55324580	55324683	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
PAAD	TCGA-IB-A6UG-01	KIR2DL4	ENST00000396284.2,ENST00000396289.5	chr19	55320287:55320338:55324579:55324750:55325144:55325197,	55324580	55324750	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
PAAD	TCGA-HZ-A49G-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
PAAD	TCGA-HZ-A49G-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-HZ-A49G-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-OE-A75W-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
PAAD	TCGA-HZ-8002-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65900817:65900956:65905697:65905877:65906992:65909303,	65905698	65905877	65905759	65905759	Frame_Shift_Del	A	-	p.P1084fs
PAAD	TCGA-FZ-5924-01	SLC8A2	ENST00000236877.6,ENST00000539381.1,ENST00000542837.1	chr19	47933491:47933722:47935423:47935702:47940718:47940818,	47935424	47935702	47935504	47935507	Frame_Shift_Del	GCGA	-	p.LA769fs
PAAD	TCGA-FZ-5924-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472554	70472555	Frame_Shift_Ins	-	A	p.P184fs
PAAD	TCGA-YH-A8SY-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
PAAD	TCGA-HZ-A4BK-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
PAAD	TCGA-HZ-A4BK-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
PAAD	TCGA-HZ-A4BK-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-3A-A9IZ-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
PAAD	TCGA-3A-A9IZ-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-US-A779-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PAAD	TCGA-US-A779-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PAAD	TCGA-IB-7890-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635951	32635951	Frame_Shift_Del	T	-	p.N638fs
PAAD	TCGA-IB-7890-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44903037:44903183:44905627:44905734:44907560:44907764,	44905628	44905734	44905698	44905698	Frame_Shift_Del	T	-	p.K1025fs
PAAD	TCGA-3A-A9I7-01	KIR2DL4	ENST00000463062.1	chr19	55320287:55320338:55324579:55324683:55325144:55325197,55317405:55317699:55324579:55324683:55325144:55325197,	55324580	55324683	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
PAAD	TCGA-3A-A9I7-01	KIR2DL4	ENST00000396284.2,ENST00000396289.5	chr19	55320287:55320338:55324579:55324750:55325144:55325197,	55324580	55324750	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
PAAD	TCGA-HZ-8001-01	BNIP1	ENST00000231668.9,ENST00000352523.6	chr5	172573868:172573961:172578568:172578697:172581324:172581416,	172578569	172578697	172578611	172578611	Frame_Shift_Del	T	-	p.F76fs
PAAD	TCGA-HZ-8001-01	YTHDF3	ENST00000524135.1,ENST00000521674.1,ENST00000520640.1,ENST00000517303.1,ENST00000542911.2	chr8	64087895:64087975:64098705:64100303:64122240:64122663,	64098706	64100303	64099487	64099487	Frame_Shift_Del	A	-	p.P305fs
PAAD	TCGA-HZ-8001-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6412853	6412854	Frame_Shift_Ins	-	C	p.PP186fs
PAAD	TCGA-HZ-8001-01	KIR2DL4	ENST00000463062.1	chr19	55320287:55320338:55324579:55324683:55325144:55325197,55317405:55317699:55324579:55324683:55325144:55325197,	55324580	55324683	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
PAAD	TCGA-HZ-8001-01	KIR2DL4	ENST00000396284.2,ENST00000396289.5	chr19	55320287:55320338:55324579:55324750:55325144:55325197,	55324580	55324750	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
PAAD	TCGA-IB-A6UF-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.K304fs
PAAD	TCGA-IB-A6UF-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-F2-A44H-01	RHBDL3	ENST00000536287.1	chr17	30594920:30594944:30615810:30616035:30621312:30621461,	30615811	30616035	30615948	30615949	Frame_Shift_Ins	-	C	p.LP144fs
PAAD	TCGA-F2-A44H-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-F2-A44H-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A94fs
PAAD	TCGA-LB-A7SX-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000515800.2,ENST00000506290.1,ENST00000512763.1	chr5	86667934:86668012:86669979:86670137:86670656:86670733,	86669980	86670137	86670133	86670134	Frame_Shift_Del	TT	-	p.F467fs
PAAD	TCGA-LB-A7SX-01	LAMA5	ENST00000252999.3	chr20	60894739:60894851:60895614:60895725:60895794:60895946,	60895615	60895725	60895697	60895698	Frame_Shift_Ins	-	G	p.P2226fs
PAAD	TCGA-FB-AAQ3-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
PAAD	TCGA-FB-AAQ3-01	HPSE2	ENST00000370552.3,ENST00000370546.1	chr10	100481413:100481585:100503639:100503813:100903994:100904156,	100503640	100503813	100503755	100503755	Frame_Shift_Del	A	-	p.F223fs
PAAD	TCGA-HZ-A77P-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
PAAD	TCGA-HZ-A77P-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796808	7796809	Frame_Shift_Ins	-	C	p.GP297fs
PAAD	TCGA-RB-A7B8-01	ATP11B	ENST00000323116.5,ENST00000498086.1	chr3	182575665:182575816:182576949:182577147:182583243:182583486,	182576950	182577147	182577061	182577085	Frame_Shift_Del	ATTGGCTGGGATCTTGATCTGTATC	-	p.IGWDLDLYH372fs
PAAD	TCGA-HV-A7OP-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
PAAD	TCGA-HV-A7OP-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34664174:34664274:34667985:34668231:34670565:34670628,	34667986	34668231	34668171	34668172	Frame_Shift_Ins	-	G	p.G95fs
PAAD	TCGA-F2-A8YN-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578180	7578190	Frame_Shift_Del	AGGCGGCTCAT	-	p.YEPP220fs
PAAD	TCGA-F2-A8YN-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796808	7796809	Frame_Shift_Ins	-	C	p.GP297fs
PAAD	TCGA-HZ-7918-01	SSH3	ENST00000532881.1,ENST00000376757.5,ENST00000308127.4	chr11	67075882:67075929:67076867:67077014:67077238:67077439,	67076868	67077014	67076881	67076899	Frame_Shift_Del	TTGAACATGGCCCGGGAGA	-	p.LNMAREI359fs
PAAD	TCGA-HZ-7918-01	MRPL48	ENST00000411840.2,ENST00000398483.3,ENST00000310614.7,ENST00000540162.1,ENST00000508278.2,ENST00000544140.1,ENST00000535529.1,ENST00000544819.1	chr11	73536752:73536841:73555851:73556021:73570951:73571054,	73555852	73556021	73555970	73555980	Frame_Shift_Del	CCCAGTATGTT	-	p.AQYV8fs
PAAD	TCGA-HZ-7918-01	COCH	ENST00000216361.4,ENST00000396618.3,ENST00000468826.2,ENST00000382493.4,ENST00000460581.2	chr14	31354599:31354826:31355001:31355518:31358821:31358999,	31355002	31355518	31355263	31355270	Frame_Shift_Del	GCTGTACA	-	p.AVQ296fs
PAAD	TCGA-IB-7654-01	DEK	ENST00000507591.1,ENST00000505224.1,ENST00000397239.3,ENST00000244776.7	chr6	18226404:18226473:18236682:18236831:18237611:18237747,	18236683	18236831	18236737	18236740	Frame_Shift_Del	TTTC	-	p.KK330fs
PAAD	TCGA-IB-7654-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256061	9256062	Frame_Shift_Ins	-	A	p.EK909fs
PAAD	TCGA-3A-A9IC-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
PAAD	TCGA-3A-A9IC-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579321	7579322	Frame_Shift_Del	CA	-	p.V122fs
PAAD	TCGA-HZ-8003-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-HZ-8003-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
PAAD	TCGA-HZ-8003-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677692	88677693	Frame_Shift_Del	GA	-	p.R408fs
PAAD	TCGA-HZ-8003-01	APOC1	ENST00000592885.1	chr19	45418130:45418206:45419446:45419727:45422429:45422466,	45419447	45419727	45419665	45419666	Frame_Shift_Ins	-	A	p.K93fs
PAAD	TCGA-2J-AAB6-01	C5	ENST00000223642.1	chr9	123783786:123783972:123785681:123785797:123787731:123787858,	123785682	123785797	123785771	123785772	Frame_Shift_Ins	-	T	p.W343fs
PAAD	TCGA-HZ-8519-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
PAAD	TCGA-IB-A7LX-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630642	158630642	Frame_Shift_Del	T	-	p.K26fs
PAAD	TCGA-IB-A7LX-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919786	57919787	Frame_Shift_Ins	-	C	p.SP345fs
PAAD	TCGA-IB-A7LX-01	PRC1	ENST00000394249.3,ENST00000557763.1,ENST00000361188.5,ENST00000553494.1,ENST00000361919.3	chr15	91525138:91525211:91527247:91527370:91537636:91537725,91525138:91525211:91527247:91527370:91527922:91528055,	91527248	91527370	91527307	91527308	Frame_Shift_Ins	-	T	p.R70fs
PAAD	TCGA-IB-A7LX-01	PRC1	ENST00000555791.1	chr15	91525138:91525211:91527135:91527370:91527922:91528055,	91527136	91527370	91527307	91527308	Frame_Shift_Ins	-	T	p.R70fs
PAAD	TCGA-US-A77G-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
PAAD	TCGA-2J-AAB1-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324564	27324565	Frame_Shift_Ins	-	T	p.KK938fs
PAAD	TCGA-2J-AAB1-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919654	57919666	Frame_Shift_Del	GGGGCCCCTGGGA	-	p.LGPLG301fs
PAAD	TCGA-2J-AAB1-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
PAAD	TCGA-H6-A45N-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.M75fs
PAAD	TCGA-H6-A45N-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-H6-A45N-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-IB-7645-01	FNBP1	ENST00000478129.1	chr9	132671168:132671278:132687238:132687436:132689473:132689506,	132687239	132687436	132687243	132687243	Frame_Shift_Del	T	-	p.N328fs
PAAD	TCGA-IB-7645-01	MARS	ENST00000550449.1	chr12	57882801:57882892:57883049:57883341:57883678:57883754,	57883050	57883341	57883053	57883053	Frame_Shift_Del	T	-	p.Y68fs
PAAD	TCGA-IB-7645-01	MARS	ENST00000551431.1	chr12	57882801:57882892:57883049:57883128:57883989:57883999,	57883050	57883128	57883053	57883053	Frame_Shift_Del	T	-	p.Y68fs
PAAD	TCGA-H6-8124-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34878346:34878411:34882089:34882227:34883558:34883611,	34882090	34882227	34882121	34882122	Frame_Shift_Ins	-	T	p.S807fs
PAAD	TCGA-H6-8124-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
PAAD	TCGA-H6-8124-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-H6-8124-01	MIS18BP1	ENST00000454990.1	chr14	45711963:45712077:45715945:45716580:45722237:45722380,	45715946	45716580	45716018	45716019	Frame_Shift_Ins	-	T	p.NA157fs
PAAD	TCGA-FZ-5923-01	BIN1	ENST00000259238.4,ENST00000484253.1,ENST00000393040.3	chr2	127808377:127808488:127808729:127808819:127816586:127816731,127808377:127808488:127808729:127808819:127809830:127809938,127808377:127808488:127808729:127808819:127815048:127815177,	127808730	127808819	127808793	127808794	Frame_Shift_Ins	-	CCCG	p.-465fs
PAAD	TCGA-FB-AAQ0-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837307	17837308	Frame_Shift_Ins	-	C	p.E319fs
PAAD	TCGA-FB-AAQ0-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508369	71508370	Frame_Shift_Ins	-	A	p.K169fs
PAAD	TCGA-IB-AAUO-01	NFKBIZ	ENST00000326172.5,ENST00000394054.2,ENST00000326151.5,ENST00000483180.1	chr3	101574576:101574746:101575916:101576027:101576135:101576303,	101575917	101576027	101575980	101575980	Frame_Shift_Del	C	-	p.R630fs
PAAD	TCGA-IB-AAUO-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
PAAD	TCGA-F2-6879-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-F2-6879-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-2L-AAQE-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
PAAD	TCGA-2L-AAQE-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000543216.1,ENST00000536777.1	chrX	44896899:44896934:44910953:44911047:44913073:44913200,	44910954	44911047	44911012	44911030	Frame_Shift_Del	CTGCACAAGTAAAAGCAAC	-	p.SAQVKAT238fs
PAAD	TCGA-HZ-A9TJ-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13620992	13620992	Frame_Shift_Del	A	-	p.Q236fs
PAAD	TCGA-HZ-A8P0-01	NOL6	ENST00000297990.4,ENST00000455041.2,ENST00000379470.1	chr9	33462594:33462811:33463030:33463132:33463244:33463435,	33463031	33463132	33463120	33463120	Frame_Shift_Del	C	-	p.D1016fs
PAAD	TCGA-XD-AAUI-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
PAAD	TCGA-RB-AA9M-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149853	39149853	Frame_Shift_Del	C	-	p.A533fs
PAAD	TCGA-RB-AA9M-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
PAAD	TCGA-2L-AAQI-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.M75fs
PAAD	TCGA-HZ-8317-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174270	105174271	Frame_Shift_Ins	-	G	p.G556fs
PAAD	TCGA-3A-A9J0-01	ARSK	ENST00000504873.1,ENST00000513814.1,ENST00000380009.4	chr5	94918619:94918902:94922265:94922437:94927104:94927329,	94922266	94922437	94922345	94922346	Frame_Shift_Ins	-	A	p.K260fs
PAAD	TCGA-3A-A9J0-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-FZ-5922-01	MRPL35	ENST00000409180.1,ENST00000337109.4	chr2	86426585:86426656:86433228:86433418:86434305:86434450,	86433229	86433418	86433365	86433366	Frame_Shift_Ins	-	A	p.H61fs
PAAD	TCGA-FZ-5922-01	TNIK	ENST00000538048.1,ENST00000460047.1,ENST00000488470.1,ENST00000341852.6,ENST00000284483.8,ENST00000475336.1,ENST00000470834.1,ENST00000369326.5,ENST00000496492.1,ENST00000436636.2,ENST00000357327.5	chr3	170781669:170781753:170783975:170784115:170784364:170784524,	170783976	170784115	170783996	170783996	Frame_Shift_Del	G	-	p.L1327fs
PAAD	TCGA-IB-AAUU-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
PAAD	TCGA-IB-AAUU-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579320	7579321	Frame_Shift_Ins	-	C	p.VL122fs
PAAD	TCGA-IB-AAUU-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796808	7796809	Frame_Shift_Ins	-	C	p.GP297fs
PAAD	TCGA-2J-AAB9-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630642	158630642	Frame_Shift_Del	T	-	p.K26fs
PAAD	TCGA-2J-AABO-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
PAAD	TCGA-2J-AABO-01	USP8	ENST00000561211.1,ENST00000559242.1	chr15	50733545:50733690:50741596:50741682:50751196:50751267,50731239:50731374:50741596:50741682:50751196:50751267,	50741597	50741682	50741645	50741645	Frame_Shift_Del	G	-	p.E101fs
PAAD	TCGA-2J-AABO-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A94fs
PAAD	TCGA-S4-A8RO-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145562533	145562534	Frame_Shift_Ins	-	G	p.G741fs
PAAD	TCGA-S4-A8RO-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
PAAD	TCGA-S4-A8RO-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
PAAD	TCGA-S4-A8RO-01	TMIGD2	ENST00000301272.2	chr19	4294771:4294813:4297982:4298342:4302336:4302382,	4297983	4298342	4298112	4298113	Frame_Shift_Ins	-	G	p.P93fs
PAAD	TCGA-HZ-7924-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-FB-A545-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-FB-A545-01	KLF4	ENST00000374672.4	chr9	110249308:110249473:110249575:110250548:110251210:110251327,	110249576	110250548	110249719	110249720	Frame_Shift_Ins	-	G	p.G319fs
PAAD	TCGA-FB-A545-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-FB-A4P5-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.M75fs
PAAD	TCGA-FB-A4P5-01	CAMTA2	ENST00000572543.1,ENST00000348066.3	chr17	4889190:4889278:4889486:4889581:4890887:4890927,	4889487	4889581	4889561	4889562	Frame_Shift_Ins	-	G	p.A9fs
PAAD	TCGA-FB-A4P5-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-FB-A4P5-01	COL18A1	ENST00000359759.4,ENST00000355480.5,ENST00000400337.2	chr21	46897324:46897401:46897663:46897879:46898240:46898267,	46897664	46897879	46897721	46897721	Frame_Shift_Del	G	-	p.G770fs
PAAD	TCGA-XD-AAUH-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551295	165551296	Frame_Shift_Ins	-	A	p.S869fs
PAAD	TCGA-XD-AAUH-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551295	165551296	Frame_Shift_Ins	-	A	p.S869fs
PAAD	TCGA-YB-A89D-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Frame_Shift_Del	C	-	p.G103fs
PAAD	TCGA-YB-A89D-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Frame_Shift_Del	C	-	p.G103fs
PAAD	TCGA-HZ-A8P1-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67302911	67302912	Frame_Shift_Ins	-	T	p.K248fs
PAAD	TCGA-2J-AABK-01	CTNND1	ENST00000361332.4,ENST00000399050.4,ENST00000530094.1,ENST00000527467.1,ENST00000415361.2,ENST00000526357.1,ENST00000532844.1,ENST00000531014.1	chr11	57581782:57581845:57582865:57582972:57583768:57584189,57581782:57581845:57582865:57582972:57583386:57583473,	57582866	57582972	57582920	57582920	Frame_Shift_Del	G	-	p.R913fs
PAAD	TCGA-2J-AABK-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074771	31074772	Frame_Shift_Ins	-	A	p.IK357fs
PAAD	TCGA-PZ-A5RE-01	USH1C	ENST00000318024.4,ENST00000526181.1,ENST00000526313.1,ENST00000527720.1,ENST00000005226.7,ENST00000527020.1	chr11	17552700:17552839:17552945:17553089:17554801:17554869,	17552946	17553089	17552955	17552956	Frame_Shift_Ins	-	G	p.A80fs
PAAD	TCGA-PZ-A5RE-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693722	Frame_Shift_Del	T	-	p.S690fs
PAAD	TCGA-PZ-A5RE-01	PPP2R5C	ENST00000445439.3,ENST00000334743.5,ENST00000557095.1,ENST00000328724.5,ENST00000557268.1,ENST00000556218.1,ENST00000350249.3,ENST00000422945.2	chr14	102349616:102349686:102349768:102349899:102356573:102356633,	102349769	102349899	102349889	102349890	Frame_Shift_Ins	-	T	p.I238fs
PAAD	TCGA-PZ-A5RE-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-IB-A5SO-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
PAAD	TCGA-IB-A5SO-01	APMAP	ENST00000451442.1,ENST00000217456.2,ENST00000447138.1	chr20	24952095:24952212:24954280:24954373:24959402:24959518,	24954281	24954373	24954286	24954286	Frame_Shift_Del	G	-	p.P139fs
PAAD	TCGA-IB-7891-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
PAAD	TCGA-IB-7891-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971109	Frame_Shift_Del	CCCGGGCAGCGTCG	-	p.RRCPG98fs
PAAD	TCGA-IB-7891-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971109	Frame_Shift_Del	CCCGGGCAGCGTCG	-	p.RRCPG98fs
PAAD	TCGA-IB-7891-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-IB-7891-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074771	31074772	Frame_Shift_Ins	-	A	p.IK357fs
PAAD	TCGA-IB-7891-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796803	7796804	Frame_Shift_Ins	-	C	p.R296fs
PAAD	TCGA-3A-A9IU-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770651	118770652	Frame_Shift_Ins	-	G	p.P1127fs
PAAD	TCGA-3A-A9IU-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579471	7579471	Frame_Shift_Del	G	-	p.P72fs
PAAD	TCGA-3A-A9IU-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A94fs
PAAD	TCGA-IB-AAUM-01	CNTNAP3	ENST00000377659.1,ENST00000377656.2,ENST00000297668.6,ENST00000358144.2	chr9	39144236:39144343:39149802:39149974:39165929:39166073,	39149803	39149974	39149853	39149853	Frame_Shift_Del	C	-	p.A533fs
PAAD	TCGA-IB-7647-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7229287	7229288	Frame_Shift_Ins	-	ACAC	p.H319fs
PAAD	TCGA-IB-7647-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
PAAD	TCGA-IB-7646-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PAAD	TCGA-IB-7646-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PAAD	TCGA-FB-A7DR-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074771	31074772	Frame_Shift_Ins	-	A	p.IK357fs
PAAD	TCGA-FB-A7DR-01	SLC9A8	ENST00000417961.1	chr20	48466115:48466217:48467298:48467381:48471974:48472118,	48467299	48467381	48467301	48467301	Frame_Shift_Del	T	-	p.G179fs
PAAD	TCGA-HV-A5A3-01	MST1	ENST00000484673.1,ENST00000449682.2,ENST00000492370.1,ENST00000545762.1,ENST00000490966.1	chr3	49724988:49725101:49725182:49725330:49726030:49726091,	49725183	49725330	49725275	49725279	Frame_Shift_Del	GTGCT	-	p.QH49fs
PAAD	TCGA-HV-A5A3-01	AP3S1	ENST00000395548.2	chr5	115177693:115177803:115202366:115202458:115230783:115230855,115177693:115177803:115202366:115202458:115205713:115205825,115188675:115188711:115202366:115202458:115205713:115205825,	115202367	115202458	115202418	115202421	Frame_Shift_Del	AAGA	-	p.KR41fs
PAAD	TCGA-HV-A5A3-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-2L-AAQA-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492904	56492908	Frame_Shift_Del	AGGGC	-	p.AL11fs
PAAD	TCGA-3A-A9IN-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
PAAD	TCGA-3A-A9IN-01	CTSV	ENST00000538255.1,ENST00000259470.5	chr9	99798804:99799029:99799533:99799680:99799774:99799897,	99799534	99799680	99799590	99799590	Frame_Shift_Del	G	-	p.L114fs
PAAD	TCGA-3A-A9IN-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34878346:34878411:34882089:34882227:34883558:34883611,	34882090	34882227	34882121	34882122	Frame_Shift_Ins	-	T	p.S807fs
PAAD	TCGA-XN-A8T3-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463340	5463341	Frame_Shift_Del	TC	-	p.EK225fs
PAAD	TCGA-2J-AABA-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34878346:34878411:34882089:34882227:34883558:34883611,	34882090	34882227	34882122	34882122	Frame_Shift_Del	T	-	p.K807fs
PAAD	TCGA-IB-7649-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971010	21971026	Frame_Shift_Del	GTCCACGGGCAGACGGC	-	p.GPSARGP125fs
PAAD	TCGA-IB-7649-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971010	21971026	Frame_Shift_Del	GTCCACGGGCAGACGGC	-	p.GPSARGP125fs
PAAD	TCGA-FB-AAPQ-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577131	7577132	Frame_Shift_Del	GC	-	p.S269fs
PAAD	TCGA-M8-A5N4-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336954	Frame_Shift_Del	A	-	p.L123fs
PAAD	TCGA-M8-A5N4-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-FB-AAPZ-01	BNIP1	ENST00000231668.9,ENST00000352523.6	chr5	172573868:172573961:172578568:172578697:172581324:172581416,	172578569	172578697	172578611	172578611	Frame_Shift_Del	T	-	p.F76fs
PAAD	TCGA-FB-AAQ2-01	RBM10	ENST00000329236.7	chrX	47038717:47038894:47039278:47039436:47039610:47039708,	47039279	47039436	47039289	47039289	Frame_Shift_Del	G	-	p.L304fs
PAAD	TCGA-FB-AAQ2-01	RBM10	ENST00000345781.6,ENST00000377604.3	chrX	47038717:47038894:47039278:47039439:47039610:47039708,	47039279	47039439	47039289	47039289	Frame_Shift_Del	G	-	p.L304fs
PAAD	TCGA-IB-7886-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579518	7579519	Frame_Shift_Ins	-	TT	p.P57fs
PAAD	TCGA-IB-7886-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593481	48593482	Frame_Shift_Ins	-	T	p.I411fs
PAAD	TCGA-LB-A8F3-01	MFSD8	ENST00000513559.1,ENST00000296468.3,ENST00000515130.1	chr4	128854139:128854248:128861007:128861152:128864906:128865147,128859937:128859993:128861007:128861152:128864906:128865147,128859937:128859993:128861007:128861152:128863199:128863304,	128861008	128861152	128861111	128861112	Frame_Shift_Ins	-	CA	p.M199fs
PAAD	TCGA-LB-A8F3-01	SP4	ENST00000222584.3	chr7	21468299:21468410:21468906:21470461:21516696:21516857,	21468907	21470461	21469543	21469544	Frame_Shift_Ins	-	T	p.N254fs
PAAD	TCGA-XD-AAUG-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
PAAD	TCGA-2L-AAQJ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562544	32562545	Frame_Shift_Ins	-	T	p.V890fs
PAAD	TCGA-HZ-A77O-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PAAD	TCGA-IB-7887-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.A377fs
PAAD	TCGA-IB-7887-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
PAAD	TCGA-FB-AAQ1-01	MYRF	ENST00000278836.5	chr11	61548628:61548801:61549044:61549296:61550984:61551017,61548609:61548801:61549044:61549296:61550969:61551072,	61549045	61549296	61549225	61549226	Frame_Shift_Ins	-	C	p.A982fs
PAAD	TCGA-FB-AAQ1-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.G73fs
PAAD	TCGA-2J-AABI-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578199	7578200	Frame_Shift_Ins	-	CC	p.V217fs
PAAD	TCGA-3A-A9IC-01	CXorf56	ENST00000320339.4,ENST00000371594.4	chrX	118676467:118676557:118678315:118678454:118694230:118694348,118676467:118676557:118678315:118678454:118679425:118679467,	118678316	118678454	118678401	118678405	Frame_Shift_Del	AAGGT	-	p.TF112fs
PAAD	TCGA-FB-A78T-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971143	21971152	Frame_Shift_Del	CAGTTGGGCT	-	p.EPNC69fs
PAAD	TCGA-FB-A78T-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971143	21971152	Frame_Shift_Del	CAGTTGGGCT	-	p.EPNC69fs
PAAD	TCGA-HZ-7926-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971003	21971004	Frame_Shift_Ins	-	A	p.E119fs
PAAD	TCGA-HZ-7926-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971003	21971004	Frame_Shift_Ins	-	A	p.E119fs
PAAD	TCGA-HZ-8005-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971143	21971144	Frame_Shift_Ins	-	A	p.C72fs
PAAD	TCGA-HZ-8005-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971143	21971144	Frame_Shift_Ins	-	A	p.C72fs
PAAD	TCGA-HZ-A8P1-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15884764:15884894:15889212:15889362:15893470:15893542,	15889213	15889362	15889230	15889230	Frame_Shift_Del	C	-	p.A88fs
PAAD	TCGA-IB-7649-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971010	21971026	Frame_Shift_Del	GTCCACGGGCAGACGGC	-	p.GRLPVD111fs
PAAD	TCGA-IB-7649-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971010	21971026	Frame_Shift_Del	GTCCACGGGCAGACGGC	-	p.GRLPVD111fs
PAAD	TCGA-IB-7652-01	ARCN1	ENST00000264028.4	chr11	118443167:118443265:118451960:118452224:118453893:118454073,	118451961	118452224	118451977	118452014	Frame_Shift_Del	CGGTCTGCACAAAAGCAGGAAAGGCTATTGTTTCTCGA	-	p.AVCTKAGKAIVSR7fs
PAAD	TCGA-IB-7652-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000471363.1,ENST00000490478.1	chr3	55018634:55018697:55021709:55021780:55038789:55038865,	55021710	55021780	55021718	55021719	Frame_Shift_Del	CT	-	p.F878fs
PAAD	TCGA-IB-7886-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593481	48593482	Frame_Shift_Ins	-	T	p.Y412fs
PAAD	TCGA-IB-7889-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000456652.1,ENST00000350198.4,ENST00000427603.1,ENST00000413150.2,ENST00000324219.4,ENST00000302217.5	chr2	102314542:102314599:102314934:102315000:102407181:102407238,	102314935	102315000	102314997	102314998	Frame_Shift_Ins	-	A	p.K41fs
PAAD	TCGA-PZ-A5RE-01	PPP2R5C	ENST00000445439.3,ENST00000334743.5,ENST00000557095.1,ENST00000328724.5,ENST00000557268.1,ENST00000556218.1,ENST00000350249.3,ENST00000422945.2	chr14	102349616:102349686:102349768:102349899:102356573:102356633,	102349769	102349899	102349889	102349890	Frame_Shift_Ins	-	T	p.I207fs
PAAD	TCGA-XD-AAUL-01	MUTYH	ENST00000482094.1,ENST00000456914.2,ENST00000372100.5,ENST00000372115.3,ENST00000529892.1,ENST00000528332.2,ENST00000372110.3,ENST00000481571.1,ENST00000450313.1,ENST00000533178.1,ENST00000354383.6,ENST00000475516.1,ENST00000467459.1,ENST00000529984.1,ENST00000448481.1,ENST00000372098.3,ENST00000528013.2,ENST00000488731.2,ENST00000372104.1,ENST00000355498.2	chr1	45796187:45796229:45796853:45797006:45797091:45797228,	45796854	45797006	45796949	45796949	Frame_Shift_Del	C	-	p.E458fs
PAAD	TCGA-YB-A89D-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971096	21971096	Frame_Shift_Del	C	-	p.E88fs
PAAD	TCGA-YB-A89D-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971096	21971096	Frame_Shift_Del	C	-	p.E88fs
PCPG	TCGA-RW-A681-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268982	115268985	Frame_Shift_Del	TGTT	-	p.542_543del
PCPG	TCGA-QR-A6GZ-05	GIPC1	ENST00000345425.2,ENST00000393033.4,ENST00000586027.1,ENST00000393029.3,ENST00000393028.1,ENST00000587210.1,ENST00000591349.1	chr19	14590223:14590336:14591116:14591297:14591404:14591590,	14591117	14591297	14591196	14591212	Frame_Shift_Del	GTAGTGCCGGCAGCCCA	-	p.187_193del
PCPG	TCGA-WB-A81H-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252907	55252910	Frame_Shift_Del	AAAT	-	p.776_777del
PCPG	TCGA-QR-A6GT-01	PNO1	ENST00000263657.2	chr2	68389677:68389795:68400478:68400549:68401866:68402096,	68400479	68400549	68400518	68400518	Frame_Shift_Del	G	-	p.M220fs
PCPG	TCGA-QR-A6GT-01	SNX19	ENST00000533318.1,ENST00000530356.1,ENST00000265909.4,ENST00000528555.1,ENST00000539184.1,ENST00000545537.1,ENST00000534726.1	chr11	130749518:130749606:130750516:130750701:130773149:130773279,	130750517	130750701	130750691	130750694	Frame_Shift_Del	CCTC	-	p.861_862del
PCPG	TCGA-RW-A689-01	NF1	ENST00000358273.4,ENST00000493220.1,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29587386:29587533:29588728:29588875:29592246:29592357,	29588729	29588875	29588743	29588743	Frame_Shift_Del	T	-	p.V1531fs
PCPG	TCGA-P8-A5KD-01	PRG4	ENST00000367483.4,ENST00000445192.2,ENST00000367484.3	chr1	186270723:186270843:186273925:186274054:186275449:186275610,186273239:186273389:186273925:186274054:186275449:186275610,	186273926	186274054	186274011	186274012	Frame_Shift_Ins	-	AA	p.S185fs
PCPG	TCGA-SP-A6QF-01	RBL2	ENST00000544405.2,ENST00000567964.2,ENST00000262133.6	chr16	53472927:53473058:53476569:53476770:53480953:53481018,	53476570	53476770	53476671	53476671	Frame_Shift_Del	T	-	p.V158fs
PCPG	TCGA-QR-A6H4-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696337	17696350	Frame_Shift_Del	ACGCCTAGAGAATT	-	p.25_29del
PCPG	TCGA-RW-A684-01	ARHGEF17	ENST00000263674.3	chr11	73074250:73074500:73074791:73074878:73075216:73075284,	73074792	73074878	73074835	73074835	Frame_Shift_Del	A	-	p.R1763fs
PCPG	TCGA-RW-A684-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000505590.1	chr4	100045529:100045617:100047744:100047883:100052654:100052915,100045529:100045617:100047744:100047883:100048359:100048495,	100047745	100047883	100047875	100047875	Frame_Shift_Del	T	-	p.S330fs
PCPG	TCGA-RW-A67Y-01	SNRPD2	ENST00000585392.1	chr19	46190720:46190985:46191644:46191724:46195144:46195146,	46191645	46191724	46191718	46191721	Frame_Shift_Del	TGAC	-	p.36_37del
PCPG	TCGA-RW-A67Y-01	SNRPD2	ENST00000588301.1	chr19	46190720:46190985:46191644:46191824:46195144:46195146,	46191645	46191824	46191718	46191721	Frame_Shift_Del	TGAC	-	p.36_37del
PCPG	TCGA-WB-A81M-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115269603:115269711:115272878:115273043:115273128:115273269,	115272879	115273043	115272911	115272912	Frame_Shift_Ins	-	C	p.K488fs
PCPG	TCGA-SP-A6QK-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373728	104373729	Frame_Shift_Ins	-	A	p.E96fs
PCPG	TCGA-PR-A5PF-01	BDH1	ENST00000432819.1,ENST00000392379.1	chr3	197260363:197260432:197273231:197273357:197300051:197300194,197260363:197260432:197273231:197273357:197281432:197281584,	197273232	197273357	197273266	197273266	Frame_Shift_Del	T	-	p.T17fs
PCPG	TCGA-SP-A6QJ-01	ARNT	ENST00000515192.1,ENST00000471844.2,ENST00000505979.1,ENST00000354396.2,ENST00000504358.1,ENST00000358595.5	chr1	150812083:150812130:150814899:150814944:150818738:150818783,	150814900	150814944	150814926	150814930	Frame_Shift_Del	GCTCT	-	p.81_83del
PCPG	TCGA-S7-A7WL-01	PLCB3	ENST00000279230.6,ENST00000325234.5,ENST00000540288.1	chr11	64033786:64033876:64033966:64034024:64034656:64034743,	64033967	64034024	64033973	64033980	Frame_Shift_Del	GACGGAGA	-	p.1121_1123del
PCPG	TCGA-S7-A7WL-01	REM2	ENST00000267396.4	chr14	23353882:23354224:23354474:23354548:23355232:23356052,	23354475	23354548	23354529	23354529	Frame_Shift_Del	T	-	p.V167fs
PCPG	TCGA-S7-A7WM-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541548	29541549	Frame_Shift_Ins	-	TT	p.Y491fs
PCPG	TCGA-WB-A815-01	LOXL4	ENST00000260702.3	chr10	100013309:100013553:100015333:100015496:100016536:100016704,	100015334	100015496	100015403	100015403	Frame_Shift_Del	G	-	p.Q508fs
PCPG	TCGA-RW-A688-01	NF1	ENST00000487476.1,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29490203:29490394:29496908:29497015:29508439:29508507,	29496909	29497015	29496993	29496993	Frame_Shift_Del	A	-	p.A188fs
PCPG	TCGA-RW-A688-01	ANAPC7	ENST00000455511.3,ENST00000546720.1,ENST00000450008.2,ENST00000552170.1	chr12	110824219:110824274:110825543:110825697:110826316:110826428,	110825544	110825697	110825686	110825686	Frame_Shift_Del	G	-	p.L212fs
PCPG	TCGA-S7-A7WN-01	NOXA1	ENST00000341349.2,ENST00000392815.2	chr9	140327656:140327715:140327904:140328059:140328201:140328316,	140327905	140328059	140327988	140327988	Frame_Shift_Del	A	-	p.G331fs
PCPG	TCGA-S7-A7WL-01	PLCB3	ENST00000279230.6,ENST00000325234.5,ENST00000540288.1	chr11	64033786:64033876:64033966:64034024:64034656:64034743,	64033967	64034024	64033973	64033980	Frame_Shift_Del	GACGGAGA	-	p.LTEI1121fs
PCPG	TCGA-S7-A7WL-01	ANKRD27	ENST00000306065.4	chr19	33113327:33113525:33116779:33116872:33117617:33117733,	33116780	33116872	33116849	33116849	Frame_Shift_Del	G	-	p.A520fs
PCPG	TCGA-WB-A80K-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	145000031	145000031	Frame_Shift_Del	C	-	p.A1493fs
PCPG	TCGA-SR-A6MX-05	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937573	76937573	Frame_Shift_Del	C	-	p.E1059fs
PCPG	TCGA-QR-A6GT-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939263	76939263	Frame_Shift_Del	T	-	p.K495fs
PCPG	TCGA-WB-A80M-01	MYO18A	ENST00000354329.4,ENST00000530254.2,ENST00000527372.1,ENST00000531253.1,ENST00000533112.1	chr17	27421953:27422077:27423778:27423933:27424240:27424368,	27423779	27423933	27423926	27423927	Frame_Shift_Ins	-	C	p.P1413fs
PCPG	TCGA-QR-A70H-01	CAMK2B	ENST00000497584.1,ENST00000457475.1,ENST00000353185.3,ENST00000395749.2,ENST00000440254.2,ENST00000258682.6,ENST00000523845.1,ENST00000350811.3,ENST00000433930.1,ENST00000502837.2,ENST00000395747.2	chr7	44270604:44270653:44273988:44274060:44274237:44274275,44272420:44272465:44273988:44274060:44274237:44274275,	44273989	44274060	44273998	44273998	Frame_Shift_Del	A	-	p.P374fs
PCPG	TCGA-SP-A6QI-01	HAPLN2	ENST00000456112.1,ENST00000255039.1	chr1	156593258:156593367:156593598:156593952:156594142:156594259,	156593599	156593952	156593628	156593628	Frame_Shift_Del	C	-	p.P40fs
PCPG	TCGA-SP-A6QI-01	NECAB3	ENST00000488489.1,ENST00000606525.1,ENST00000480994.1,ENST00000478237.1,ENST00000607805.1,ENST00000485399.1,ENST00000375238.4,ENST00000494174.1	chr20	32246527:32246640:32247302:32247356:32247458:32247538,	32247303	32247356	32247350	32247350	Frame_Shift_Del	G	-	p.R278fs
PCPG	TCGA-SP-A6QI-01	NECAB3	ENST00000246190.6,ENST00000483813.1	chr20	32246527:32246640:32247302:32247538:32247690:32247804,	32247303	32247538	32247350	32247350	Frame_Shift_Del	G	-	p.R278fs
PCPG	TCGA-SP-A6QI-01	NECAB3	ENST00000246190.6,ENST00000483813.1	chr20	32246527:32246640:32247302:32247538:32247690:32247804,	32247303	32247538	32247387	32247387	Frame_Shift_Del	C	-	p.W265fs
PCPG	TCGA-RM-A68W-01	SLC35B2	ENST00000393812.3	chr6	44223305:44223381:44224421:44224615:44225136:44225265,44224078:44224233:44224421:44224615:44225136:44225265,	44224422	44224615	44224447	44224447	Frame_Shift_Del	G	-	p.F60fs
PCPG	TCGA-P8-A5KD-01	PRG4	ENST00000367483.4,ENST00000445192.2,ENST00000367484.3	chr1	186270723:186270843:186273925:186274054:186275449:186275610,186273239:186273389:186273925:186274054:186275449:186275610,	186273926	186274054	186274011	186274012	Frame_Shift_Ins	-	AA	p.SK185fs
PCPG	TCGA-P8-A5KD-01	JPH4	ENST00000553505.1	chr14	24044893:24045665:24046283:24046833:24047388:24047779,	24046284	24046833	24046493	24046493	Frame_Shift_Del	C	-	p.G58fs
PCPG	TCGA-P8-A5KD-01	WDR18	ENST00000587001.2,ENST00000607440.1,ENST00000591985.2,ENST00000251289.5	chr19	989761:989895:990222:990364:990851:990995,	990223	990364	990349	990349	Frame_Shift_Del	G	-	p.L194fs
PCPG	TCGA-RW-A680-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PCPG	TCGA-W2-A7HH-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
PCPG	TCGA-RT-A6Y9-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123164810:123164975:123171376:123171473:123176418:123176495,	123171377	123171473	123171406	123171407	Frame_Shift_Ins	-	A	p.A107fs
PCPG	TCGA-S7-A7WV-01	RNFT2	ENST00000319176.7,ENST00000407967.3,ENST00000392549.2,ENST00000257575.4	chr12	117178840:117178899:117187645:117188112:117191788:117191865,	117187646	117188112	117187692	117187692	Frame_Shift_Del	G	-	p.G44fs
PCPG	TCGA-P7-A5NY-05	MYRF	ENST00000278836.5,ENST00000389602.4,ENST00000265460.5,ENST00000537318.1	chr11	61546759:61546895:61546969:61547042:61547313:61547402,	61546970	61547042	61547022	61547022	Frame_Shift_Del	C	-	p.P744fs
PCPG	TCGA-P7-A5NY-05	MYRF	ENST00000327797.1	chr11	61546759:61546895:61546969:61547048:61547313:61547402,	61546970	61547048	61547022	61547022	Frame_Shift_Del	C	-	p.P744fs
PCPG	TCGA-P7-A5NY-05	DUOX2	ENST00000603300.1,ENST00000389039.6,ENST00000558383.1	chr15	45398725:45398839:45399029:45399167:45399542:45399661,	45399030	45399167	45399034	45399034	Frame_Shift_Del	G	-	p.P609fs
PCPG	TCGA-P7-A5NY-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PCPG	TCGA-QT-A5XM-01	ESPN	ENST00000475228.1,ENST00000377828.1,ENST00000416731.1,ENST00000434576.1,ENST00000461727.1	chr1	6511717:6511808:6511892:6512156:6517243:6517323,	6511893	6512156	6512081	6512081	Frame_Shift_Del	C	-	p.I750fs
PCPG	TCGA-RW-A685-01	CYP2W1	ENST00000340150.6	chr7	1022993:1023021:1024047:1024210:1024585:1024735,	1024048	1024210	1024197	1024197	Frame_Shift_Del	C	-	p.I52fs
PCPG	TCGA-RW-A8AZ-01	SOHLH1	ENST00000298466.5,ENST00000425225.1	chr9	138586232:138586303:138586895:138587109:138588457:138588651,	138586896	138587109	138586951	138586951	Frame_Shift_Del	C	-	p.A275fs
PCPG	TCGA-RW-A8AZ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937831	76937834	Frame_Shift_Del	GGTC	-	p.DQ972fs
PCPG	TCGA-QR-A6H2-01	MED25	ENST00000312865.6,ENST00000593767.1,ENST00000594998.1,ENST00000538643.1	chr19	50338314:50338434:50338790:50338862:50338983:50338995,	50338791	50338862	50338834	50338834	Frame_Shift_Del	A	-	p.E573fs
PCPG	TCGA-QR-A6H2-01	PCYT1B	ENST00000356768.4,ENST00000379144.2,ENST00000496020.1	chrX	24625861:24625978:24637101:24637201:24665105:24665155,	24637102	24637201	24637194	24637195	Frame_Shift_Del	GT	-	p.T24fs
PCPG	TCGA-QR-A6H4-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696337	17696350	Frame_Shift_Del	ACGCCTAGAGAATT	-	p.SRLENY25fs
PCPG	TCGA-RW-A684-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000505590.1	chr4	100045529:100045617:100047744:100047883:100052654:100052915,100045529:100045617:100047744:100047883:100048359:100048495,	100047745	100047883	100047875	100047875	Frame_Shift_Del	T	-	p.S349fs
PCPG	TCGA-RW-A684-01	ARHGEF17	ENST00000263674.3	chr11	73074250:73074500:73074791:73074878:73075216:73075284,	73074792	73074878	73074835	73074835	Frame_Shift_Del	A	-	p.N1764fs
PCPG	TCGA-RW-A68G-01	CDH11	ENST00000567934.1,ENST00000268603.4,ENST00000394156.3	chr16	65032464:65032759:65038544:65038944:65087706:65087831,	65038545	65038944	65038741	65038741	Frame_Shift_Del	A	-	p.L11fs
PCPG	TCGA-WB-A80Q-01	FRMD4A	ENST00000378503.1,ENST00000358621.4,ENST00000357447.2	chr10	13696415:13696512:13698635:13699522:13701322:13701490,	13698636	13699522	13698822	13698822	Frame_Shift_Del	C	-	p.A923fs
PCPG	TCGA-W2-A7UY-01	SYT5	ENST00000589172.1,ENST00000537500.1,ENST00000354308.3,ENST00000592470.1	chr19	55687372:55687492:55689563:55689736:55690330:55690433,	55689564	55689736	55689729	55689729	Frame_Shift_Del	G	-	p.P29fs
PCPG	TCGA-WB-A80N-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228525990:228526073:228526553:228526727:228527645:228527802,	228526554	228526727	228526563	228526563	Frame_Shift_Del	C	-	p.I6655fs
PCPG	TCGA-QT-A5XJ-01	SEMA3F	ENST00000002829.3	chr3	50211733:50211783:50212528:50212621:50214200:50214294,	50212529	50212621	50212532	50212532	Frame_Shift_Del	A	-	p.T154fs
PCPG	TCGA-QT-A5XJ-01	TMA16	ENST00000508268.1,ENST00000513134.1,ENST00000358572.5,ENST00000513272.1	chr4	164415859:164415956:164428184:164428297:164433973:164434011,	164428185	164428297	164428219	164428219	Frame_Shift_Del	A	-	p.E13fs
PCPG	TCGA-QR-A6ZZ-01	TESPA1	ENST00000525978.1,ENST00000449076.1,ENST00000532757.1,ENST00000316577.8,ENST00000532804.1,ENST00000526532.1,ENST00000524622.1,ENST00000524923.1,ENST00000533446.1,ENST00000531122.1	chr12	55357642:55357734:55359836:55359935:55360171:55360208,	55359837	55359935	55359857	55359857	Frame_Shift_Del	C	-	p.G4fs
PCPG	TCGA-SP-A6QC-01	MIB2	ENST00000378712.1	chr1	1563868:1564102:1564512:1564691:1565018:1565084,	1564513	1564691	1564560	1564560	Frame_Shift_Del	G	-	p.A809fs
PCPG	TCGA-SP-A6QC-01	IMMT	ENST00000409051.2	chr2	86393630:86393767:86397871:86397964:86398330:86398411,86393630:86393767:86397871:86397964:86400772:86400884,	86397872	86397964	86397875	86397875	Frame_Shift_Del	C	-	p.E218fs
PCPG	TCGA-SP-A6QC-01	IMMT	ENST00000410111.3,ENST00000409258.2,ENST00000474969.1,ENST00000449247.2	chr2	86393630:86393767:86397871:86397967:86398330:86398411,	86397872	86397967	86397875	86397875	Frame_Shift_Del	C	-	p.E218fs
PCPG	TCGA-SP-A6QC-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000526832.1,ENST00000356994.2	chr8	144874160:144874303:144874389:144874575:144874654:144874801,	144874390	144874575	144874553	144874554	Frame_Shift_Ins	-	C	p.PP1450fs
PCPG	TCGA-SP-A6QC-01	SCRIB	ENST00000525051.1	chr8	144874160:144874303:144874389:144874571:144874654:144874801,	144874390	144874571	144874553	144874554	Frame_Shift_Ins	-	C	p.PP1450fs
PCPG	TCGA-WB-A80V-01	OBSCN	ENST00000366709.4,ENST00000284548.11	chr1	228539021:228539151:228540651:228540763:228543851:228543894,	228540652	228540763	228540722	228540722	Frame_Shift_Del	A	-	p.Q7164fs
PCPG	TCGA-QR-A7IP-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682290	85682290	Frame_Shift_Del	C	-	p.T120fs
PCPG	TCGA-QT-A5XP-01	TJP2	ENST00000348208.4,ENST00000265384.7,ENST00000539225.1,ENST00000535702.1,ENST00000453658.2,ENST00000377245.4	chr9	71833172:71833275:71835802:71836412:71840219:71840323,	71835803	71836412	71836075	71836075	Frame_Shift_Del	G	-	p.L205fs
PCPG	TCGA-RW-A68F-01	UBE2W	ENST00000453587.2,ENST00000419880.3,ENST00000517608.1,ENST00000602593.1,ENST00000602969.1	chr8	74722708:74722864:74737381:74737484:74742615:74742707,	74737382	74737484	74737421	74737421	Frame_Shift_Del	T	-	p.L86fs
PCPG	TCGA-RW-A68F-01	LRRC27	ENST00000368612.1,ENST00000472556.1,ENST00000368614.3,ENST00000432555.2,ENST00000392638.2,ENST00000368610.3,ENST00000462656.1,ENST00000475747.1,ENST00000368613.4	chr10	134165113:134165257:134169293:134169390:134174960:134175093,	134169294	134169390	134169317	134169317	Frame_Shift_Del	G	-	p.W304fs
PCPG	TCGA-WB-A822-01	LIG1	ENST00000601091.1,ENST00000594067.1,ENST00000263274.7,ENST00000536218.1,ENST00000594759.1,ENST00000427526.2,ENST00000597901.1	chr19	48639010:48639036:48639290:48639382:48640264:48640341,	48639291	48639382	48639327	48639327	Frame_Shift_Del	G	-	p.L463fs
PCPG	TCGA-WB-A81H-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55252907	55252910	Frame_Shift_Del	AAAT	-	p.SF775fs
PCPG	TCGA-SA-A6C2-01	ACER2	ENST00000340967.2	chr9	19434944:19435082:19446278:19446416:19450447:19451323,	19446279	19446416	19446412	19446412	Frame_Shift_Del	A	-	p.M213fs
PCPG	TCGA-SA-A6C2-01	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357568	50357571	Frame_Shift_Del	ACAT	-	p.YV457fs
PCPG	TCGA-S7-A7WM-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541548	29541549	Frame_Shift_Ins	-	TT	p.S491fs
PCPG	TCGA-RW-A686-06	SSB	ENST00000474273.1,ENST00000260956.4,ENST00000409333.1	chr2	170663480:170663581:170664991:170665063:170665369:170665412,	170664992	170665063	170665008	170665008	Frame_Shift_Del	A	-	p.K192fs
PCPG	TCGA-QR-A70R-01	SREBF1	ENST00000395757.1,ENST00000261646.5,ENST00000338854.5,ENST00000355815.4	chr17	17720271:17720450:17720569:17720771:17721009:17721214,	17720570	17720771	17720609	17720609	Frame_Shift_Del	G	-	p.H553fs
PCPG	TCGA-WB-A80Y-01	MIDN	ENST00000300952.2,ENST00000591446.2	chr19	1251837:1251900:1254165:1254477:1254900:1255060,	1254166	1254477	1254406	1254407	Frame_Shift_Ins	-	C	p.P209fs
PCPG	TCGA-S7-A7WP-01	CACNA1H	ENST00000358590.4,ENST00000565831.1,ENST00000348261.5	chr16	1259031:1259412:1260034:1260135:1260369:1260493,	1260035	1260135	1260066	1260066	Frame_Shift_Del	A	-	p.E1259fs
PCPG	TCGA-QT-A5XN-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729786	78729786	Frame_Shift_Del	T	-	p.K711fs
PCPG	TCGA-XG-A823-01	CDC42BPG	ENST00000342711.5	chr11	64593941:64594027:64594142:64594266:64594521:64594639,	64594143	64594266	64594255	64594255	Frame_Shift_Del	C	-	p.E1467fs
PCPG	TCGA-WB-A816-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
PCPG	TCGA-WB-A816-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
PCPG	TCGA-RT-A6YA-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465991	59465992	Frame_Shift_Ins	-	A	p.E891fs
PCPG	TCGA-WB-A81Q-01	ARHGEF19	ENST00000478210.1	chr1	16531845:16531920:16532425:16532578:16532674:16532835,	16532426	16532578	16532568	16532568	Frame_Shift_Del	C	-	p.D437fs
PCPG	TCGA-QR-A6GU-01	MUC3A	ENST00000319509.7,ENST00000422757.1	chr7	100552885:100553066:100606195:100606311:100606737:100606802,	100606196	100606311	100606304	100606304	Frame_Shift_Del	G	-	p.W607fs
PCPG	TCGA-QR-A6GX-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PCPG	TCGA-RW-A67Y-01	SNRPD2	ENST00000585392.1	chr19	46190720:46190985:46191644:46191724:46195144:46195146,	46191645	46191724	46191718	46191721	Frame_Shift_Del	TGAC	-	p.VK36fs
PCPG	TCGA-RW-A67Y-01	SNRPD2	ENST00000588301.1	chr19	46190720:46190985:46191644:46191824:46195144:46195146,	46191645	46191824	46191718	46191721	Frame_Shift_Del	TGAC	-	p.VK36fs
PCPG	TCGA-SP-A6QF-01	NRM	ENST00000482141.1	chr6	30655828:30656719:30657052:30657229:30657823:30658020,30655828:30656719:30657052:30657229:30657801:30658020,30655828:30656719:30657052:30657229:30658618:30658744,	30657053	30657229	30657192	30657192	Frame_Shift_Del	G	-	p.P123fs
PCPG	TCGA-QR-A702-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141763298:141763386:141764183:141764322:141765134:141765268,	141764184	141764322	141764301	141764301	Frame_Shift_Del	C	-	p.S1488fs
PCPG	TCGA-QR-A6GZ-05	GIPC1	ENST00000345425.2,ENST00000393033.4,ENST00000586027.1,ENST00000393029.3,ENST00000393028.1,ENST00000587210.1,ENST00000591349.1	chr19	14590223:14590336:14591116:14591297:14591404:14591590,	14591117	14591297	14591196	14591212	Frame_Shift_Del	GTAGTGCCGGCAGCCCA	-	p.LGCRHY187fs
PCPG	TCGA-P7-A5NX-01	STAG2	ENST00000371144.3,ENST00000371160.1,ENST00000371145.3,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3	chrX	123211806:123211908:123215229:123215378:123217270:123217399,	123215230	123215378	123215265	123215265	Frame_Shift_Del	T	-	p.N937fs
PCPG	TCGA-SR-A6MQ-01	BSG	ENST00000574970.1	chr19	572595:572701:577773:578121:579499:579629,575051:575140:577773:578121:579499:579629,	577774	578121	577826	577826	Frame_Shift_Del	G	-	p.V40fs
PCPG	TCGA-WB-A821-01	ITGA3	ENST00000320031.8,ENST00000506437.1,ENST00000505306.1	chr17	48165107:48165233:48165588:48165730:48166473:48167093,	48165589	48165730	48165686	48165686	Frame_Shift_Del	C	-	p.T1048fs
PCPG	TCGA-QR-A70K-01	MBOAT7	ENST00000391754.1,ENST00000245615.1,ENST00000495968.1,ENST00000491216.1,ENST00000437868.1	chr19	54692070:54692200:54692286:54692365:54693188:54693211,	54692287	54692365	54692324	54692324	Frame_Shift_Del	A	-	p.L13fs
PCPG	TCGA-WB-A81P-01	NF1	ENST00000417592.2,ENST00000581790.1,ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29670026:29670153:29676137:29676269:29677200:29677336,	29676138	29676269	29676174	29676177	Frame_Shift_Del	CAGT	-	p.TV2409fs
PCPG	TCGA-WB-A81I-01	UBL4A	ENST00000369653.4	chrX	153714109:153714318:153714566:153714672:153714875:153714951,	153714567	153714672	153714628	153714628	Frame_Shift_Del	G	-	p.S31fs
PCPG	TCGA-W2-A7H5-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
PCPG	TCGA-QR-A700-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253745	55253746	Frame_Shift_Ins	-	T	p.R497fs
PCPG	TCGA-QR-A70U-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
PCPG	TCGA-QR-A70U-01	ZNF106	ENST00000263805.4,ENST00000565611.1,ENST00000565500.1,ENST00000565380.1	chr15	42707937:42709558:42710002:42710149:42713258:42713330,	42710003	42710149	42710138	42710145	Frame_Shift_Del	GCAACCAT	-	p.HGC1818fs
PCPG	TCGA-PR-A5PF-01	AGRN	ENST00000379370.2	chr1	979713:979819:980540:980657:980738:980903,	980541	980657	980571	980571	Frame_Shift_Del	C	-	p.A762fs
PCPG	TCGA-WB-A81M-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115269603:115269711:115272878:115273043:115273128:115273269,	115272879	115273043	115272911	115272912	Frame_Shift_Ins	-	C	p.N488fs
PCPG	TCGA-WB-A81M-01	UBALD1	ENST00000590965.1	chr16	4659831:4659984:4660493:4660657:4664678:4664873,	4660494	4660657	4660590	4660591	Frame_Shift_Ins	-	C	p.L63fs
PCPG	TCGA-RW-A681-01	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2	chr1	115267841:115267954:115268831:115269007:115269603:115269711,	115268832	115269007	115268982	115268985	Frame_Shift_Del	TGTT	-	p.KQ542fs
PCPG	TCGA-SP-A6QJ-01	ARNT	ENST00000515192.1,ENST00000471844.2,ENST00000505979.1,ENST00000354396.2,ENST00000504358.1,ENST00000358595.5	chr1	150812083:150812130:150814899:150814944:150818738:150818783,	150814900	150814944	150814926	150814930	Frame_Shift_Del	GCTCT	-	p.QS81fs
PCPG	TCGA-TT-A6YJ-01	DLAT	ENST00000531306.1,ENST00000533297.1,ENST00000280346.6,ENST00000537636.1,ENST00000393051.1	chr11	111921957:111922073:111930626:111930789:111931761:111931898,	111930627	111930789	111930686	111930690	Frame_Shift_Del	TTGTG	-	p.IV525fs
PRAD	TCGA-EJ-5525-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578242	7578242	Frame_Shift_Del	C	-	p.V203fs
PRAD	TCGA-EJ-5525-01	ITSN1	ENST00000399367.3,ENST00000381291.4,ENST00000487427.1,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35191544:35191627:35195790:35195957:35199121:35199167,	35195791	35195957	35195922	35195922	Frame_Shift_Del	T	-	p.V1049fs
PRAD	TCGA-EJ-5525-01	NR1D2	ENST00000492552.1,ENST00000383773.4,ENST00000312521.4	chr3	23997527:23997616:24001161:24001306:24003467:24003825,	24001162	24001306	24001168	24001168	Frame_Shift_Del	T	-	p.F126fs
PRAD	TCGA-EJ-5525-01	NR1D2	ENST00000468700.1	chr3	23997527:23997616:24001161:24001415:24003467:24003825,	24001162	24001415	24001168	24001168	Frame_Shift_Del	T	-	p.F126fs
PRAD	TCGA-KC-A4BV-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711886	89711887	Frame_Shift_Ins	-	C	p.I168fs
PRAD	TCGA-KK-A59V-01	SIRT1	ENST00000212015.6,ENST00000497639.1	chr10	69647174:69647291:69648639:69648881:69651159:69651254,	69648640	69648881	69648852	69648852	Frame_Shift_Del	A	-	p.C253X
PRAD	TCGA-KK-A59V-01	RNLS	ENST00000466945.1,ENST00000331772.4	chr10	90341323:90341466:90341958:90342064:90342829:90342947,	90341959	90342064	90341967	90341967	Frame_Shift_Del	T	-	p.H73fs
PRAD	TCGA-KK-A59V-01	CNIH2	ENST00000528852.1,ENST00000530519.1,ENST00000311445.6	chr11	66049729:66049798:66050203:66050251:66050505:66050618,	66050204	66050251	66050214	66050215	Frame_Shift_Ins	-	A	p.L54fs
PRAD	TCGA-KK-A59V-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542775	24542776	Frame_Shift_Ins	-	T	p.Y79fs
PRAD	TCGA-KK-A59V-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
PRAD	TCGA-KK-A59V-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3,ENST00000411772.1	chr15	43730521:43730614:43733723:43733781:43738584:43738788,	43733724	43733781	43733757	43733757	Frame_Shift_Del	T	-	p.N1022fs
PRAD	TCGA-KK-A59V-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966285	64966285	Frame_Shift_Del	G	-	p.R411fs
PRAD	TCGA-KK-A59V-01	WDR81	ENST00000419248.1,ENST00000464528.1,ENST00000446363.1,ENST00000437219.2,ENST00000309182.5,ENST00000409644.1,ENST00000545662.1	chr17	1635959:1636125:1636820:1637510:1638865:1639011,	1636821	1637510	1637102	1637102	Frame_Shift_Del	G	-	p.G363fs
PRAD	TCGA-KK-A59V-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562728	14562728	Frame_Shift_Del	C	-	p.T359fs
PRAD	TCGA-KK-A59V-01	KLK8	ENST00000347619.4	chr19	51499263:51499470:51501006:51501140:51504353:51504431,	51501007	51501140	51501092	51501093	Frame_Shift_Ins	-	G	p.Q226fs
PRAD	TCGA-KK-A59V-01	TNFRSF4	ENST00000497869.1,ENST00000379236.3	chr1	1147083:1147212:1147321:1147518:1148017:1148084,	1147322	1147518	1147441	1147441	Frame_Shift_Del	G	-	p.P172fs
PRAD	TCGA-KK-A59V-01	TIE1	ENST00000538015.1,ENST00000372476.3,ENST00000441333.2	chr1	43772510:43772666:43772812:43772944:43773102:43773243,	43772813	43772944	43772910	43772910	Frame_Shift_Del	C	-	p.C246fs
PRAD	TCGA-KK-A59V-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122567	35122567	Frame_Shift_Del	C	-	p.V155fs
PRAD	TCGA-KK-A59V-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122567	35122567	Frame_Shift_Del	C	-	p.V155fs
PRAD	TCGA-KK-A59V-01	MED15	ENST00000489651.1,ENST00000263205.7	chr22	20922852:20922918:20936897:20937034:20937126:20937254,20929399:20929519:20936897:20937034:20937126:20937254,	20936898	20937034	20936976	20936976	Frame_Shift_Del	C	-	p.P410fs
PRAD	TCGA-KK-A59V-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926367	1926367	Frame_Shift_Del	G	-	p.R392fs
PRAD	TCGA-KK-A59V-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926367	1926367	Frame_Shift_Del	G	-	p.R392fs
PRAD	TCGA-KK-A59V-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511377	20511377	Frame_Shift_Del	T	-	p.G133fs
PRAD	TCGA-KK-A59V-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864163	129864163	Frame_Shift_Del	T	-	p.A541fs
PRAD	TCGA-KK-A59V-01	ACSL1	ENST00000454703.2,ENST00000506733.1,ENST00000437665.3,ENST00000281455.2,ENST00000504900.1,ENST00000513317.1,ENST00000504342.1,ENST00000515030.1,ENST00000507295.1	chr4	185694996:185695029:185697637:185697816:185698037:185698137,	185697638	185697816	185697797	185697797	Frame_Shift_Del	A	-	p.V200fs
PRAD	TCGA-KK-A59V-01	SOD2	ENST00000367054.2,ENST00000367055.4,ENST00000546087.1	chr6	160100150:160100330:160103505:160103670:160105885:160106018,	160103506	160103670	160103610	160103610	Frame_Shift_Del	T	-	p.N195fs
PRAD	TCGA-KK-A59V-01	AGR3	ENST00000402239.3,ENST00000310398.2	chr7	16902233:16902286:16913403:16913467:16921567:16921597,16902233:16902286:16913403:16913467:16918133:16918269,	16913404	16913467	16913405	16913405	Frame_Shift_Del	T	-	p.S58fs
PRAD	TCGA-KK-A59V-01	FKTN	ENST00000223528.2,ENST00000602526.1,ENST00000602661.1,ENST00000457847.1,ENST00000448551.2,ENST00000357998.5	chr9	108380239:108380373:108382214:108382342:108397331:108397429,	108382215	108382342	108382270	108382270	Frame_Shift_Del	T	-	p.V367fs
PRAD	TCGA-CH-5737-01	PDZRN3	ENST00000263666.4,ENST00000479530.1,ENST00000462146.2,ENST00000535920.1,ENST00000492909.1,ENST00000494559.1,ENST00000466780.1,ENST00000466348.1	chr3	73434848:73434936:73437118:73437220:73438966:73439029,	73437119	73437220	73437147	73437148	Frame_Shift_Ins	-	A	p.S497fs
PRAD	TCGA-HC-7819-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4,ENST00000392202.3,ENST00000407449.1,ENST00000308862.6,ENST00000452564.1	chr2	209153452:209153542:209163364:209163503:209165660:209165818,	209163365	209163503	209163430	209163439	Frame_Shift_Del	CATCTGTCAG	-	p.326_329del
PRAD	TCGA-EJ-7123-01	CEP112	ENST00000535342.2,ENST00000582795.1,ENST00000580482.1,ENST00000580694.1,ENST00000392769.2,ENST00000317442.8,ENST00000581739.1,ENST00000537949.1	chr17	63685300:63685336:63739185:63739335:63746779:63746842,	63739186	63739335	63739297	63739297	Frame_Shift_Del	T	-	p.E89fs
PRAD	TCGA-EJ-5495-01	SDAD1	ENST00000395711.4,ENST00000507396.1,ENST00000395710.1,ENST00000356260.5	chr4	76886936:76886975:76888429:76888487:76890448:76890552,	76888430	76888487	76888458	76888458	Frame_Shift_Del	C	-	p.Q340fs
PRAD	TCGA-J4-A67N-01	CHST15	ENST00000435907.1,ENST00000346248.5	chr10	125771848:125771996:125780771:125780928:125798030:125798135,	125780772	125780928	125780846	125780852	Frame_Shift_Del	GCTGCAG	-	p.423_425del
PRAD	TCGA-G9-6494-01	KLK2	ENST00000600755.1	chr19	51376713:51376775:51379727:51380264:51381659:51381861,51377976:51378136:51379727:51380264:51381659:51381861,	51379728	51380264	51379825	51379826	Frame_Shift_Del	AA	-	p.101_102del
PRAD	TCGA-G9-6494-01	KLK2	ENST00000597439.1	chr19	51377976:51378136:51379727:51380014:51380127:51380177,51377976:51378136:51379727:51380014:51380140:51380198,	51379728	51380014	51379825	51379826	Frame_Shift_Del	AA	-	p.101_102del
PRAD	TCGA-HC-7080-01	XRCC6	ENST00000405878.1,ENST00000360079.3,ENST00000359308.4	chr22	42018000:42018090:42024121:42024234:42032116:42032255,	42024122	42024234	42024154	42024155	Frame_Shift_Ins	-	T	p.I39fs
PRAD	TCGA-HC-7080-01	SSB	ENST00000260956.4,ENST00000409333.1	chr2	170666792:170666933:170667367:170667554:170667692:170667833,	170667368	170667554	170667531	170667531	Frame_Shift_Del	C	-	p.S325fs
PRAD	TCGA-EJ-7125-01	MIB1	ENST00000578646.1,ENST00000261537.6,ENST00000578260.1	chr18	19383867:19383975:19395576:19395774:19399455:19399519,	19395577	19395774	19395662	19395663	Frame_Shift_Ins	-	T	p.D522fs
PRAD	TCGA-KK-A6E7-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.L247fs
PRAD	TCGA-EJ-5527-01	SURF4	ENST00000371989.3,ENST00000467910.1	chr9	136230430:136230635:136231715:136231902:136232860:136232904,	136231716	136231902	136231748	136231748	Frame_Shift_Del	T	-	p.T171fs
PRAD	TCGA-QU-A6IP-01	ATE1	ENST00000423243.1,ENST00000224652.6,ENST00000543447.1	chr10	123629520:123629553:123659380:123659509:123670420:123670666,123629520:123629553:123659380:123659509:123661905:123662053,	123659381	123659509	123659394	123659395	Frame_Shift_Ins	-	GC	p.P310fs
PRAD	TCGA-QU-A6IP-01	ITPR2	ENST00000381340.3,ENST00000451599.2	chr12	26553060:26553191:26564252:26564345:26568235:26568431,	26564253	26564345	26564280	26564280	Frame_Shift_Del	A	-	p.S2458fs
PRAD	TCGA-G9-7519-01	SLC4A7	ENST00000454389.1,ENST00000295736.5,ENST00000388777.4	chr3	27465527:27465643:27472788:27473160:27475445:27475595,27465527:27465643:27472788:27473160:27475406:27475595,	27472789	27473160	27472797	27472798	Frame_Shift_Del	AA	-	p.372_372del
PRAD	TCGA-HC-8265-01	TOP2B	ENST00000413971.1,ENST00000264331.4,ENST00000540199.1,ENST00000435706.2,ENST00000542520.1	chr3	25651058:25651203:25654005:25654200:25656695:25656779,	25654006	25654200	25654130	25654130	Frame_Shift_Del	C	-	p.G1216fs
PRAD	TCGA-HC-8265-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118506410:118506975:118507472:118507664:118510955:118511032,	118507473	118507664	118507503	118507504	Frame_Shift_Ins	-	T	p.L2174fs
PRAD	TCGA-HC-7213-01	SRSF3	ENST00000373715.6	chr6	36564537:36564745:36566625:36566760:36568928:36568967,	36566626	36566760	36566669	36566670	Frame_Shift_Ins	-	A	p.E84fs
PRAD	TCGA-HC-7750-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535451	40535451	Frame_Shift_Del	T	-	p.P299fs
PRAD	TCGA-QU-A6IM-01	DERL2	ENST00000572834.1	chr17	5378046:5378109:5383373:5383464:5388470:5388536,	5383374	5383464	5383387	5383387	Frame_Shift_Del	T	-	p.T201fs
PRAD	TCGA-KK-A6E5-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693538	45693538	Frame_Shift_Del	A	-	p.L751fs
PRAD	TCGA-EJ-7781-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576890	7576890	Frame_Shift_Del	T	-	p.K319fs
PRAD	TCGA-EJ-7782-01	WDR37	ENST00000263150.4,ENST00000358220.1	chr10	1142109:1142186:1149541:1149776:1151065:1151207,	1149542	1149776	1149689	1149689	Frame_Shift_Del	G	-	p.V291fs
PRAD	TCGA-EJ-7782-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560464	75560464	Frame_Shift_Del	C	-	p.S1698fs
PRAD	TCGA-EJ-7782-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
PRAD	TCGA-EJ-7782-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3,ENST00000546771.1	chr12	72008985:72009096:72013094:72013189:72013705:72013745,	72013095	72013189	72013161	72013161	Frame_Shift_Del	A	-	p.L1693fs
PRAD	TCGA-EJ-7782-01	STARD13	ENST00000255486.4,ENST00000336934.5,ENST00000399365.3	chr13	33680894:33681071:33684009:33684227:33684822:33685044,	33684010	33684227	33684168	33684168	Frame_Shift_Del	G	-	p.S964fs
PRAD	TCGA-EJ-7782-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85658669:85658718:85659214:85659350:85660871:85661063,	85659215	85659350	85659319	85659325	Frame_Shift_Del	ATTTTTG	-	p.455_457del
PRAD	TCGA-EJ-7782-01	NCOR1	ENST00000395851.1	chr17	15961784:15961913:15965071:15965208:15965418:15965584,	15965072	15965208	15965099	15965099	Frame_Shift_Del	G	-	p.Q1849fs
PRAD	TCGA-EJ-7782-01	NCOR1	ENST00000395857.3,ENST00000470782.1,ENST00000395849.2,ENST00000458113.2,ENST00000268712.3	chr17	15961784:15961913:15964714:15965208:15965418:15965584,	15964715	15965208	15965099	15965099	Frame_Shift_Del	G	-	p.Q1849fs
PRAD	TCGA-EJ-7782-01	ILVBL	ENST00000598709.1	chr19	15230821:15230892:15233503:15233615:15236466:15236477,	15233504	15233615	15233586	15233587	Frame_Shift_Del	CG	-	p.212_212del
PRAD	TCGA-EJ-7782-01	CLTCL1	ENST00000263200.10,ENST00000505027.2,ENST00000413132.2,ENST00000427926.1,ENST00000353891.5	chr22	19223218:19223392:19226797:19226911:19230297:19230459,	19226798	19226911	19226837	19226837	Frame_Shift_Del	A	-	p.P253fs
PRAD	TCGA-EJ-7782-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693894	47693895	Frame_Shift_Ins	-	A	p.N536fs
PRAD	TCGA-EJ-7782-01	TOP2B	ENST00000264331.4,ENST00000424225.1,ENST00000435706.2	chr3	25672291:25672430:25673936:25674074:25674183:25674285,	25673937	25674074	25674067	25674067	Frame_Shift_Del	T	-	p.N374fs
PRAD	TCGA-EJ-7782-01	KIF2A	ENST00000381103.2,ENST00000407818.3,ENST00000401507.3,ENST00000506857.1	chr5	61673487:61673589:61676944:61677080:61681310:61681455,	61676945	61677080	61677057	61677057	Frame_Shift_Del	T	-	p.I709X
PRAD	TCGA-EJ-7782-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.Q413fs
PRAD	TCGA-EJ-7782-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.Q413fs
PRAD	TCGA-CH-5751-01	ETV3	ENST00000368192.4	chr1	157090982:157095771:157103903:157104019:157105262:157105500,	157103904	157104019	157104016	157104017	Frame_Shift_Ins	-	T	p.Y96_Y97delinsX
PRAD	TCGA-HC-7231-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923074	150923075	Frame_Shift_Ins	-	A	p.L574fs
PRAD	TCGA-J4-8198-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84375053	84375060	Frame_Shift_Del	TAAAGCTA	-	p.113_115del
PRAD	TCGA-H9-A6BY-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514337	75514338	Frame_Shift_Ins	-	T	p.N674fs
PRAD	TCGA-J4-8200-01	ST8SIA4	ENST00000231461.5	chr5	100191806:100192100:100222046:100222304:100231357:100231487,	100222047	100222304	100222192	100222193	Frame_Shift_Ins	-	G	p.I120fs
PRAD	TCGA-G9-6364-01	CD68	ENST00000380498.6	chr17	7482955:7483044:7483208:7483645:7483783:7483797,	7483209	7483645	7483262	7483263	Frame_Shift_Del	CA	-	p.34_35del
PRAD	TCGA-G9-6364-01	CD68	ENST00000584502.1	chr17	7482955:7483044:7483166:7483645:7483783:7483797,	7483167	7483645	7483262	7483263	Frame_Shift_Del	CA	-	p.34_35del
PRAD	TCGA-EJ-A65J-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830880	72830881	Frame_Shift_Ins	-	CT	p.G987fs
PRAD	TCGA-FC-7961-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717695	89717696	Frame_Shift_Ins	-	T	p.Y240fs
PRAD	TCGA-G9-6333-01	CAMK4	ENST00000514007.1	chr5	110679721:110679800:110710547:110710610:110712557:110712640,110679721:110679800:110710547:110710610:110730407:110730447,	110710548	110710610	110710553	110710554	Frame_Shift_Ins	-	A	p.D82fs
PRAD	TCGA-J9-A52C-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944500	Frame_Shift_Del	G	-	p.T455fs
PRAD	TCGA-J9-A52C-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L356fs
PRAD	TCGA-J9-A52C-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458970	49458971	Frame_Shift_Ins	-	G	p.M38fs
PRAD	TCGA-J9-A52C-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458970	49458971	Frame_Shift_Ins	-	G	p.M38fs
PRAD	TCGA-J9-A52C-01	SAMD11	ENST00000342066.3,ENST00000455979.1,ENST00000341065.4	chr1	877938:878438:878632:878757:879077:879188,	878633	878757	878744	878745	Frame_Shift_Del	GA	-	p.559_559del
PRAD	TCGA-J9-A52C-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741614	37741614	Frame_Shift_Del	A	-	p.V649fs
PRAD	TCGA-J9-A52C-01	ABCF1	ENST00000441867.1,ENST00000326195.8	chr6	30548182:30548296:30550170:30550284:30550842:30550965,	30550171	30550284	30550275	30550276	Frame_Shift_Ins	-	A	p.L261fs
PRAD	TCGA-HC-7075-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19109263:19110451:19112433:19112621:19116002:19116146,	19112434	19112621	19112465	19112498	Frame_Shift_Del	TCTTCCGACGCATCATGCTGAATACCCATATTCG	-	p.771_782del
PRAD	TCGA-HI-7169-01	TMEM131	ENST00000186436.5	chr2	98378497:98378663:98382576:98382726:98382940:98383065,	98382577	98382726	98382597	98382597	Frame_Shift_Del	G	-	p.P1568fs
PRAD	TCGA-KK-A6E4-01	ARNT2	ENST00000533983.1,ENST00000527771.1,ENST00000303329.4	chr15	80872751:80872890:80873579:80873745:80883908:80884045,	80873580	80873745	80873662	80873662	Frame_Shift_Del	C	-	p.S612fs
PRAD	TCGA-EJ-8468-01	CHD1	ENST00000514344.1,ENST00000284049.3	chr5	98204198:98204339:98205457:98205586:98206390:98206420,	98205458	98205586	98205472	98205473	Frame_Shift_Ins	-	AT	p.E1365fs
PRAD	TCGA-HC-8256-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128633708:128633818:128638710:128638779:128640056:128640188,	128638711	128638779	128638774	128638774	Frame_Shift_Del	A	-	p.D369fs
PRAD	TCGA-HC-A4ZV-01	ACSS2	ENST00000481971.1,ENST00000468550.2,ENST00000253382.5,ENST00000488172.1,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33500898:33500990:33501195:33501299:33501555:33501608,	33501196	33501299	33501245	33501263	Frame_Shift_Del	GCTTGTGGTGGCCATGCTG	-	p.77_83del
PRAD	TCGA-J4-A67K-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436375	16436375	Frame_Shift_Del	G	-	p.P606fs
PRAD	TCGA-KK-A5A1-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34922689	34922689	Frame_Shift_Del	G	-	p.P384fs
PRAD	TCGA-KK-A5A1-01	TSTD2	ENST00000354801.2,ENST00000341170.4	chr9	100387962:100388279:100389679:100389894:100395524:100395583,	100389680	100389894	100389704	100389705	Frame_Shift_Ins	-	T	p.K47fs
PRAD	TCGA-KK-A5A1-01	TSTD2	ENST00000375172.2	chr9	100387962:100388279:100389587:100389894:100395524:100395583,	100389588	100389894	100389704	100389705	Frame_Shift_Ins	-	T	p.K47fs
PRAD	TCGA-EJ-5532-01	CCDC144A	ENST00000360495.5,ENST00000360524.8,ENST00000340621.5,ENST00000443444.2,ENST00000399273.1	chr17	16610782:16610856:16612109:16612949:16614992:16615129,	16612110	16612949	16612678	16612678	Frame_Shift_Del	T	-	p.V436fs
PRAD	TCGA-CH-5744-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920425	57920425	Frame_Shift_Del	G	-	p.L499fs
PRAD	TCGA-HC-7210-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000414883.1,ENST00000282641.2,ENST00000395495.1	chr10	52601621:52601752:52603747:52603882:52619601:52619745,	52603748	52603882	52603796	52603796	Frame_Shift_Del	T	-	p.L63fs
PRAD	TCGA-FC-7708-01	PCID2	ENST00000375457.2,ENST00000375459.1	chr13	113852504:113852578:113854740:113854830:113862912:113862943,113852504:113852578:113854740:113854830:113862337:113862420,	113854741	113854830	113854766	113854766	Frame_Shift_Del	G	-	p.P34fs
PRAD	TCGA-CH-5769-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246441	56246442	Frame_Shift_Ins	-	C	p.K523fs
PRAD	TCGA-CH-5769-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740427	62740427	Frame_Shift_Del	G	-	p.Q117fs
PRAD	TCGA-CH-5769-01	ARHGAP15	ENST00000549436.1,ENST00000295095.6	chr2	144313976:144314054:144381701:144381836:144460987:144461093,	144381702	144381836	144381770	144381770	Frame_Shift_Del	T	-	p.M357fs
PRAD	TCGA-CH-5750-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206847	89206848	Frame_Shift_Ins	-	A	p.D75fs
PRAD	TCGA-HC-7742-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.77_78del
PRAD	TCGA-EJ-7314-01	MCM3AP	ENST00000397708.1,ENST00000291688.1	chr21	47690314:47690477:47692474:47692743:47693301:47693499,	47692475	47692743	47692564	47692565	Frame_Shift_Del	GT	-	p.792_793del
PRAD	TCGA-CH-5761-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	22021827:22022016:22022432:22022521:22022696:22022910,	22022433	22022521	22022438	22022438	Frame_Shift_Del	A	-	p.P804fs
PRAD	TCGA-CH-5761-01	DVL2	ENST00000005340.5,ENST00000575458.1	chr17	7130973:7131102:7131295:7131363:7132287:7132354,	7131296	7131363	7131298	7131299	Frame_Shift_Ins	-	G	p.R367fs
PRAD	TCGA-CH-5761-01	GAPVD1	ENST00000265956.4,ENST00000495955.1,ENST00000312123.9,ENST00000394104.2,ENST00000474637.1,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128121698:128121771:128122806:128123004:128124884:128125025,	128122807	128123004	128122940	128122940	Frame_Shift_Del	C	-	p.A1420fs
PRAD	TCGA-EJ-8468-01	NAALADL2	ENST00000473253.1,ENST00000454872.1	chr3	175041963:175042114:175165016:175165160:175181188:175181281,	175165017	175165160	175165149	175165149	Frame_Shift_Del	T	-	p.L408fs
PRAD	TCGA-EJ-8468-01	CHD1	ENST00000514344.1,ENST00000284049.3	chr5	98204198:98204339:98205457:98205586:98206390:98206420,	98205458	98205586	98205472	98205473	Frame_Shift_Ins	-	AT	p.R1365fs
PRAD	TCGA-J4-A67N-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
PRAD	TCGA-J4-A67N-01	CHST15	ENST00000435907.1,ENST00000346248.5	chr10	125771848:125771996:125780771:125780928:125798030:125798135,	125780772	125780928	125780846	125780852	Frame_Shift_Del	GCTGCAG	-	p.LQL423fs
PRAD	TCGA-ZG-A9NI-01	RARS2	ENST00000369536.5	chr6	88239259:88239366:88240501:88240660:88251635:88251712,	88240502	88240660	88240657	88240657	Frame_Shift_Del	A	-	p.Y206fs
PRAD	TCGA-HC-7230-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
PRAD	TCGA-XK-AAJ3-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12070949	12070949	Frame_Shift_Del	G	-	p.H314fs
PRAD	TCGA-HC-7742-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515266	183515267	Frame_Shift_Ins	-	A	p.K829fs
PRAD	TCGA-HC-7742-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.R209fs
PRAD	TCGA-ZG-A9L1-01	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97821361	97821362	Frame_Shift_Del	TG	-	p.DV528fs
PRAD	TCGA-G9-A9S0-01	ALG13	ENST00000394780.3,ENST00000251943.4,ENST00000495283.1	chrX	110951254:110951621:110952192:110952276:110954902:110954953,	110952193	110952276	110952229	110952229	Frame_Shift_Del	A	-	p.K263fs
PRAD	TCGA-V1-A9Z9-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47125209:47125872:47127684:47127804:47129602:47129737,	47127685	47127804	47127717	47127721	Frame_Shift_Del	CGTCA	-	p.GDG1787fs
PRAD	TCGA-V1-A9Z9-01	AKAP9	ENST00000394534.2	chr7	91699343:91699520:91700218:91700323:91706168:91706321,91699451:91699496:91700218:91700323:91706168:91706321,	91700219	91700323	91700316	91700316	Frame_Shift_Del	A	-	p.E2214fs
PRAD	TCGA-V1-A9Z9-01	ARFIP2	ENST00000254584.2,ENST00000423813.2,ENST00000396777.3,ENST00000525235.1,ENST00000531037.1	chr11	6500088:6500189:6500369:6500488:6501201:6501298,	6500370	6500488	6500446	6500447	Frame_Shift_Del	GG	-	p.P80fs
PRAD	TCGA-HC-A8D0-01	POLE	ENST00000535270.1,ENST00000539006.1,ENST00000320574.5,ENST00000537064.1	chr12	133250160:133250293:133251983:133252103:133252320:133252406,	133251984	133252103	133252018	133252037	Frame_Shift_Del	TGTACTCCCCCTGGCTGTCC	-	p.KDSQGEYK391fs
PRAD	TCGA-YL-A9WJ-01	KRT80	ENST00000466011.1,ENST00000394815.2	chr12	52563306:52565306:52565441:52565497:52565981:52566202,	52565442	52565497	52565485	52565485	Frame_Shift_Del	G	-	p.P397fs
PRAD	TCGA-G9-6494-01	KLK2	ENST00000600755.1	chr19	51376713:51376775:51379727:51380264:51381659:51381861,51377976:51378136:51379727:51380264:51381659:51381861,	51379728	51380264	51379825	51379826	Frame_Shift_Del	AA	-	p.N102fs
PRAD	TCGA-G9-6494-01	KLK2	ENST00000597439.1	chr19	51377976:51378136:51379727:51380014:51380127:51380177,51377976:51378136:51379727:51380014:51380140:51380198,	51379728	51380014	51379825	51379826	Frame_Shift_Del	AA	-	p.N102fs
PRAD	TCGA-G9-7519-01	SLC4A7	ENST00000454389.1,ENST00000295736.5,ENST00000388777.4	chr3	27465527:27465643:27472788:27473160:27475445:27475595,27465527:27465643:27472788:27473160:27475406:27475595,	27472789	27473160	27472797	27472798	Frame_Shift_Del	AA	-	p.L372fs
PRAD	TCGA-V1-A9OQ-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155735616	155735617	Frame_Shift_Ins	-	G	p.H1216fs
PRAD	TCGA-V1-A9OQ-01	WBP4	ENST00000542082.1,ENST00000379487.3	chr13	41650179:41650373:41654781:41654945:41656839:41657332,	41654782	41654945	41654831	41654831	Frame_Shift_Del	A	-	p.E269fs
PRAD	TCGA-HI-7169-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406039	91406040	Frame_Shift_Ins	-	T	p.K291fs
PRAD	TCGA-HI-7169-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515266	183515267	Frame_Shift_Ins	-	A	p.K829fs
PRAD	TCGA-XK-AAIR-01	KCNQ2	ENST00000344425.5,ENST00000370221.1,ENST00000359125.2,ENST00000370224.1,ENST00000344462.4,ENST00000357249.2,ENST00000359689.1,ENST00000360480.3,ENST00000354587.3	chr20	62070950:62071061:62073758:62073884:62076011:62076187,	62073759	62073884	62073806	62073806	Frame_Shift_Del	C	-	p.E257fs
PRAD	TCGA-HC-7749-01	ULK4	ENST00000301831.4,ENST00000460406.1	chr3	41841624:41841785:41860914:41860998:41877355:41877463,	41860915	41860998	41860984	41860985	Frame_Shift_Ins	-	T	p.K593fs
PRAD	TCGA-HC-7749-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265762	75265768	Frame_Shift_Del	GTCTCAT	-	p.RSH1254fs
PRAD	TCGA-EJ-5509-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-EJ-7782-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693894	47693895	Frame_Shift_Ins	-	A	p.KK536fs
PRAD	TCGA-EJ-7782-01	KIF2A	ENST00000381103.2,ENST00000407818.3,ENST00000401507.3,ENST00000506857.1	chr5	61673487:61673589:61676944:61677080:61681310:61681455,	61676945	61677080	61677057	61677057	Frame_Shift_Del	T	-	p.I651fs
PRAD	TCGA-EJ-7782-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.K147fs
PRAD	TCGA-EJ-7782-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817443	86817444	Frame_Shift_Ins	-	A	p.K147fs
PRAD	TCGA-EJ-7782-01	WDR37	ENST00000263150.4,ENST00000358220.1	chr10	1142109:1142186:1149541:1149776:1151065:1151207,	1149542	1149776	1149689	1149689	Frame_Shift_Del	G	-	p.G293fs
PRAD	TCGA-EJ-7782-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560464	75560464	Frame_Shift_Del	C	-	p.S1690fs
PRAD	TCGA-EJ-7782-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471453	93471453	Frame_Shift_Del	T	-	p.K96fs
PRAD	TCGA-EJ-7782-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471453	93471453	Frame_Shift_Del	T	-	p.K96fs
PRAD	TCGA-EJ-7782-01	STARD13	ENST00000255486.4,ENST00000336934.5,ENST00000399365.3	chr13	33680894:33681071:33684009:33684227:33684822:33685044,	33684010	33684227	33684168	33684168	Frame_Shift_Del	G	-	p.P963fs
PRAD	TCGA-EJ-7782-01	PDE8A	ENST00000478717.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000560789.1,ENST00000557957.1,ENST00000559742.1	chr15	85658669:85658718:85659214:85659350:85660871:85661063,	85659215	85659350	85659319	85659325	Frame_Shift_Del	ATTTTTG	-	p.IFE502fs
PRAD	TCGA-EJ-7782-01	NCOR1	ENST00000395851.1	chr17	15961784:15961913:15965071:15965208:15965418:15965584,	15965072	15965208	15965099	15965099	Frame_Shift_Del	G	-	p.Q1833fs
PRAD	TCGA-EJ-7782-01	NCOR1	ENST00000395857.3,ENST00000470782.1,ENST00000395849.2,ENST00000458113.2,ENST00000268712.3	chr17	15961784:15961913:15964714:15965208:15965418:15965584,	15964715	15965208	15965099	15965099	Frame_Shift_Del	G	-	p.Q1833fs
PRAD	TCGA-EJ-7782-01	ICAM3	ENST00000160262.5,ENST00000589261.1	chr19	10445203:10445458:10445741:10446029:10446346:10446449,	10445742	10446029	10446010	10446011	Frame_Shift_Ins	-	G	p.P146fs
PRAD	TCGA-EJ-7782-01	ICAM3	ENST00000592439.1	chr19	10445203:10445458:10445816:10446029:10446346:10446449,	10445817	10446029	10446010	10446011	Frame_Shift_Ins	-	G	p.P146fs
PRAD	TCGA-EJ-7782-01	ILVBL	ENST00000598709.1	chr19	15230821:15230892:15233503:15233615:15236466:15236477,	15233504	15233615	15233586	15233587	Frame_Shift_Del	CG	-	p.DV211fs
PRAD	TCGA-EJ-7782-01	EMC10	ENST00000601780.1,ENST00000376918.3	chr19	50984140:50984234:50985117:50985204:50985405:50985419,	50985118	50985204	50985132	50985132	Frame_Shift_Del	G	-	p.L231fs
PRAD	TCGA-EJ-7782-01	CLTCL1	ENST00000263200.10,ENST00000505027.2,ENST00000413132.2,ENST00000427926.1,ENST00000353891.5	chr22	19223218:19223392:19226797:19226911:19230297:19230459,	19226798	19226911	19226837	19226837	Frame_Shift_Del	A	-	p.F252fs
PRAD	TCGA-EJ-7782-01	DNAJC2	ENST00000475065.1,ENST00000249270.7,ENST00000454277.1,ENST00000379263.3,ENST00000379257.3	chr7	102964044:102964110:102964928:102965009:102966989:102967131,	102964929	102965009	102964991	102964992	Frame_Shift_Ins	-	T	p.S197fs
PRAD	TCGA-VP-A87B-01	GPSM3	ENST00000375040.3,ENST00000375043.3	chr6	32159485:32159647:32159924:32160027:32160248:32160293,32159485:32159685:32159924:32160027:32160248:32160293,	32159925	32160027	32160026	32160026	Frame_Shift_Del	C	-	p.G12fs
PRAD	TCGA-EJ-7783-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729786	78729786	Frame_Shift_Del	T	-	p.K711fs
PRAD	TCGA-V1-A9OT-01	PDCD11	ENST00000369797.3	chr10	105187085:105187148:105191885:105191991:105193704:105193794,	105191886	105191991	105191973	105191974	Frame_Shift_Ins	-	A	p.VL1152fs
PRAD	TCGA-J9-A52C-01	SAMD11	ENST00000342066.3,ENST00000455979.1,ENST00000341065.4	chr1	877938:878438:878632:878757:879077:879188,	878633	878757	878744	878745	Frame_Shift_Del	GA	-	p.G559fs
PRAD	TCGA-J9-A52C-01	RGS2	ENST00000464302.1	chr1	192778272:192778311:192779295:192779561:192780110:192780162,	192779296	192779561	192779369	192779369	Frame_Shift_Del	A	-	p.K63fs
PRAD	TCGA-J9-A52C-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290249	132290249	Frame_Shift_Del	C	-	p.H257fs
PRAD	TCGA-J9-A52C-01	DNAH1	ENST00000486752.1,ENST00000420323.2	chr3	52409970:52410009:52412617:52412796:52413920:52414151,	52412618	52412796	52412624	52412624	Frame_Shift_Del	C	-	p.A2402fs
PRAD	TCGA-J9-A52C-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698177	2698177	Frame_Shift_Del	A	-	p.K832fs
PRAD	TCGA-J9-A52C-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-J9-A52C-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-J9-A52C-01	ABCF1	ENST00000441867.1,ENST00000326195.8	chr6	30548182:30548296:30550170:30550284:30550842:30550965,	30550171	30550284	30550275	30550276	Frame_Shift_Ins	-	A	p.LK261fs
PRAD	TCGA-J9-A52C-01	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2,ENST00000550968.1	chr12	112647818:112648056:112650290:112650454:112654095:112654175,	112650291	112650454	112650410	112650411	Frame_Shift_Del	GT	-	p.PP2359fs
PRAD	TCGA-J9-A52C-01	CHD2	ENST00000557381.1,ENST00000556930.1,ENST00000420239.2,ENST00000536619.1,ENST00000556270.1,ENST00000394196.4	chr15	93472259:93472321:93480747:93480855:93482807:93482948,	93480748	93480855	93480819	93480819	Frame_Shift_Del	A	-	p.Q172fs
PRAD	TCGA-J9-A52C-01	TRAP1	ENST00000538171.1,ENST00000246957.5	chr16	3726094:3726146:3727498:3727659:3729719:3729791,	3727499	3727659	3727584	3727594	Frame_Shift_Del	AGTAGAAACCC	-	p.VGFYS203fs
PRAD	TCGA-J9-A52C-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944500	Frame_Shift_Del	G	-	p.P454fs
PRAD	TCGA-J9-A52C-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349355	89349356	Frame_Shift_Ins	-	T	p.E1199fs
PRAD	TCGA-J9-A52C-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L357fs
PRAD	TCGA-J9-A52C-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741614	37741614	Frame_Shift_Del	A	-	p.K651fs
PRAD	TCGA-XK-AAK1-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-XK-AAK1-01	WAS	ENST00000483750.1,ENST00000465982.1,ENST00000450772.1,ENST00000376701.4	chrX	48542671:48542812:48543935:48544022:48544122:48544225,	48543936	48544022	48543988	48543988	Frame_Shift_Del	C	-	p.T109fs
PRAD	TCGA-EJ-5516-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-EJ-5516-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-FC-7708-01	PCID2	ENST00000375457.2,ENST00000375459.1	chr13	113852504:113852578:113854740:113854830:113862912:113862943,113852504:113852578:113854740:113854830:113862337:113862420,	113854741	113854830	113854766	113854766	Frame_Shift_Del	G	-	p.P32fs
PRAD	TCGA-XK-AAIW-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026866	48026866	Frame_Shift_Del	T	-	p.F582fs
PRAD	TCGA-XK-AAIW-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026866	48026866	Frame_Shift_Del	T	-	p.F582fs
PRAD	TCGA-XK-AAIW-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102450870:102450925:102452361:102452440:102456280:102456394,	102452362	102452440	102452432	102452432	Frame_Shift_Del	A	-	p.S255fs
PRAD	TCGA-XK-AAIW-01	CARF	ENST00000320443.8,ENST00000545262.1,ENST00000402905.3,ENST00000545253.1,ENST00000428585.1,ENST00000438828.2,ENST00000414439.1	chr2	203836227:203836461:203839056:203839219:203841991:203842055,	203839057	203839219	203839141	203839141	Frame_Shift_Del	A	-	p.I472fs
PRAD	TCGA-XK-AAIW-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12125469	12125469	Frame_Shift_Del	A	-	p.E1814fs
PRAD	TCGA-XK-AAIW-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.K304fs
PRAD	TCGA-XK-AAIW-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086413	144086414	Frame_Shift_Ins	-	A	p.*226fs
PRAD	TCGA-XK-AAIW-01	C7orf57	ENST00000435376.1,ENST00000430738.1,ENST00000420324.1,ENST00000348904.3,ENST00000539619.1	chr7	48083077:48083186:48086056:48086213:48089476:48089574,	48086057	48086213	48086204	48086205	Frame_Shift_Ins	-	A	p.EK166fs
PRAD	TCGA-XK-AAIW-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91709345	91709345	Frame_Shift_Del	A	-	p.E2645fs
PRAD	TCGA-XK-AAIW-01	BCAP29	ENST00000379119.2,ENST00000445771.2,ENST00000465919.1,ENST00000379117.2,ENST00000005259.4,ENST00000442065.1,ENST00000457837.1,ENST00000479917.1,ENST00000491150.1,ENST00000421217.1	chr7	107224363:107224427:107234399:107234550:107236311:107236366,	107234400	107234550	107234540	107234540	Frame_Shift_Del	T	-	p.F113fs
PRAD	TCGA-XK-AAIW-01	IL7	ENST00000520215.1	chr8	79648708:79648762:79652236:79652317:79710306:79710443,79648708:79648762:79652236:79652317:79710362:79710443,	79652237	79652317	79652263	79652264	Frame_Shift_Ins	-	A	p.L67fs
PRAD	TCGA-XK-AAIW-01	ZCCHC7	ENST00000461038.1,ENST00000336755.5,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2	chr9	37302184:37302228:37304184:37304310:37305540:37305711,	37304185	37304310	37304288	37304289	Frame_Shift_Ins	-	A	p.*253fs
PRAD	TCGA-XK-AAIW-01	CNTNAP3B	ENST00000276974.6,ENST00000377561.2,ENST00000377564.3,ENST00000479351.1,ENST00000341990.4	chr9	43800863:43801011:43815784:43815988:43816636:43816821,	43815785	43815988	43815972	43815973	Frame_Shift_Ins	-	T	p.VF242fs
PRAD	TCGA-XK-AAIW-01	EHMT1	ENST00000488242.1,ENST00000486164.1,ENST00000462942.1,ENST00000460843.1	chr9	140705912:140706067:140707457:140707625:140707837:140707896,	140707458	140707625	140707502	140707502	Frame_Shift_Del	A	-	p.E971fs
PRAD	TCGA-XK-AAIW-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99969296	99969296	Frame_Shift_Del	A	-	p.I475fs
PRAD	TCGA-XK-AAIW-01	TMEM41B	ENST00000299596.4	chr11	9302200:9302588:9304917:9305140:9308001:9308140,	9304918	9305140	9304992	9304992	Frame_Shift_Del	T	-	p.K285fs
PRAD	TCGA-XK-AAIW-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148474	44148474	Frame_Shift_Del	T	-	p.N192fs
PRAD	TCGA-XK-AAIW-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320481	46320482	Frame_Shift_Ins	-	T	p.R686fs
PRAD	TCGA-XK-AAIW-01	GNPTAB	ENST00000299314.7	chr12	102151349:102151435:102153807:102153921:102154904:102155124,	102153808	102153921	102153878	102153879	Frame_Shift_Ins	-	T	p.A1060fs
PRAD	TCGA-XK-AAIW-01	USPL1	ENST00000255304.4	chr13	31195900:31196029:31204971:31205611:31211880:31211994,	31204972	31205611	31205109	31205110	Frame_Shift_Ins	-	A	p.SK122fs
PRAD	TCGA-XK-AAIW-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344887	33344888	Frame_Shift_Ins	-	A	p.Q1387fs
PRAD	TCGA-XK-AAIW-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.K266fs
PRAD	TCGA-XK-AAIW-01	MIS18BP1	ENST00000310806.4	chr14	45673601:45673656:45675285:45675373:45679582:45679731,	45675286	45675373	45675289	45675289	Frame_Shift_Del	T	-	p.K1079fs
PRAD	TCGA-XK-AAIW-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831137	58831137	Frame_Shift_Del	A	-	p.E777fs
PRAD	TCGA-XK-AAIW-01	ABR	ENST00000544583.2	chr17	1003876:1003975:1028517:1028702:1090093:1090616,	1028518	1028702	1028642	1028642	Frame_Shift_Del	G	-	p.P41fs
PRAD	TCGA-XK-AAIW-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384448	12384448	Frame_Shift_Del	A	-	p.W256fs
PRAD	TCGA-XK-AAIW-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371752.1	chr20	47871031:47871186:47872344:47872484:47873953:47874201,	47872345	47872484	47872451	47872451	Frame_Shift_Del	T	-	p.R900fs
PRAD	TCGA-XK-AAIW-01	BRWD1	ENST00000380800.3,ENST00000342449.3,ENST00000333229.2,ENST00000446924.1	chr21	40581920:40582073:40582711:40582855:40584591:40584633,	40582712	40582855	40582837	40582837	Frame_Shift_Del	T	-	p.S1307fs
PRAD	TCGA-XK-AAIW-01	BRWD1	ENST00000473813.1	chr21	40581920:40582073:40582791:40582855:40584591:40584633,	40582792	40582855	40582837	40582837	Frame_Shift_Del	T	-	p.S1307fs
PRAD	TCGA-EJ-A8FU-01	SRP54	ENST00000556994.1,ENST00000556380.1,ENST00000216774.6,ENST00000546080.1,ENST00000555557.1	chr14	35477979:35478037:35480714:35480865:35482551:35482640,	35480715	35480865	35480857	35480857	Frame_Shift_Del	A	-	p.N210fs
PRAD	TCGA-VP-A87K-01	SGSH	ENST00000534910.1,ENST00000573150.1,ENST00000576941.1,ENST00000572257.1,ENST00000570923.1,ENST00000326317.6	chr17	78186003:78186073:78187602:78187684:78187970:78188127,	78187603	78187684	78187632	78187632	Frame_Shift_Del	T	-	p.Q239fs
PRAD	TCGA-YL-A8SQ-01	SLC22A3	ENST00000275300.2,ENST00000392145.1	chr6	160831760:160831878:160857811:160857909:160858028:160858243,	160857812	160857909	160857879	160857879	Frame_Shift_Del	G	-	p.R348fs
PRAD	TCGA-YL-A8SQ-01	CDH24	ENST00000397359.3,ENST00000485922.1,ENST00000487137.2,ENST00000554034.1,ENST00000267383.5	chr14	23517372:23517688:23518235:23518484:23518835:23518947,	23518236	23518484	23518460	23518461	Frame_Shift_Ins	-	A	p.L579fs
PRAD	TCGA-YL-A8SQ-01	PELP1	ENST00000436683.2,ENST00000570571.1,ENST00000574876.1,ENST00000572293.1,ENST00000573523.1,ENST00000575329.1,ENST00000269230.7,ENST00000570387.1,ENST00000301396.4	chr17	4579795:4579802:4580047:4580107:4585796:4585868,	4580048	4580107	4580059	4580059	Frame_Shift_Del	G	-	p.Q231fs
PRAD	TCGA-J4-A83K-01	PISD	ENST00000435900.1,ENST00000460723.1,ENST00000336566.4,ENST00000474017.1,ENST00000439502.2	chr22	32044180:32044262:32046684:32046764:32058129:32058207,	32046685	32046764	32046701	32046701	Frame_Shift_Del	A	-	p.F43fs
PRAD	TCGA-KK-A6E7-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.S247fs
PRAD	TCGA-HI-7168-01	SNX13	ENST00000428135.3,ENST00000498463.1,ENST00000409389.1,ENST00000474067.1,ENST00000409076.2,ENST00000482558.1,ENST00000409604.1,ENST00000492626.1	chr7	17931168:17931258:17932954:17933057:17936956:17937069,	17932955	17933057	17933026	17933026	Frame_Shift_Del	T	-	p.T53fs
PRAD	TCGA-KK-A8I9-01	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871034	871034	Frame_Shift_Del	G	-	p.L485fs
PRAD	TCGA-SU-A7E7-01	HSP90AB1	ENST00000353801.3	chr6	44214823:44214932:44216353:44216513:44217113:44217320,	44216354	44216513	44216408	44216409	Frame_Shift_Del	TT	-	p.TF14fs
PRAD	TCGA-HC-7213-01	SRSF3	ENST00000373715.6	chr6	36564537:36564745:36566625:36566760:36568928:36568967,	36566626	36566760	36566669	36566670	Frame_Shift_Ins	-	A	p.K84fs
PRAD	TCGA-HC-7213-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761193	93761193	Frame_Shift_Del	T	-	p.K58fs
PRAD	TCGA-HC-7750-01	CAP1	ENST00000372805.3,ENST00000479759.1,ENST00000372792.2,ENST00000372802.1,ENST00000340450.3,ENST00000372798.1,ENST00000372797.3	chr1	40533211:40533389:40535361:40535546:40535830:40535954,	40535362	40535546	40535451	40535451	Frame_Shift_Del	T	-	p.F300fs
PRAD	TCGA-EJ-7785-01	ADCY4	ENST00000545213.1	chr14	24792109:24792294:24792549:24792660:24793267:24793405,24792109:24792294:24792549:24792660:24794582:24794680,	24792550	24792660	24792632	24792632	Frame_Shift_Del	G	-	p.P692fs
PRAD	TCGA-EJ-7785-01	NECAB3	ENST00000488489.1,ENST00000477778.1,ENST00000485976.1,ENST00000606525.1,ENST00000478237.1,ENST00000246190.6,ENST00000485399.1,ENST00000375238.4,ENST00000494174.1,ENST00000483813.1	chr20	32245595:32245663:32245747:32245839:32246282:32246360,	32245748	32245839	32245753	32245753	Frame_Shift_Del	A	-	p.F386fs
PRAD	TCGA-KK-A7AW-01	THOC1	ENST00000579891.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6	chr18	224923:224994:225088:225139:225336:225403,	225089	225139	225119	225119	Frame_Shift_Del	G	-	p.P369fs
PRAD	TCGA-ZG-A9N3-01	METTL25	ENST00000547357.1,ENST00000548200.1	chr12	82752318:82752603:82780581:82780746:82783594:82783701,	82780582	82780746	82780736	82780736	Frame_Shift_Del	C	-	p.N138fs
PRAD	TCGA-EJ-7781-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32091103	32091104	Frame_Shift_Ins	-	C	p.P2517fs
PRAD	TCGA-EJ-7781-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576890	7576890	Frame_Shift_Del	T	-	p.K321fs
PRAD	TCGA-V1-A9ZR-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-ZG-A9ND-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047624	125047628	Frame_Shift_Del	TAGGC	-	p.VG798fs
PRAD	TCGA-ZG-A9L0-01	KIF25	ENST00000351261.3	chr6	168440744:168440896:168442648:168442831:168445506:168445743,	168442649	168442831	168442674	168442674	Frame_Shift_Del	C	-	p.L224fs
PRAD	TCGA-KK-A6E3-01	MEST	ENST00000463263.1,ENST00000223215.4,ENST00000416162.2,ENST00000341441.5,ENST00000378576.4,ENST00000393187.1	chr7	130142494:130142561:130143773:130143837:130144779:130145194,	130143774	130143837	130143791	130143791	Frame_Shift_Del	C	-	p.P282fs
PRAD	TCGA-HC-8260-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3	chr19	1113533:1113703:1114229:1114421:1116019:1116102,	1114230	1114421	1114389	1114389	Frame_Shift_Del	G	-	p.R640fs
PRAD	TCGA-HC-A6HY-01	ZFPM1	ENST00000319555.3	chr16	88580794:88580928:88593221:88593324:88594439:88594646,	88593222	88593324	88593283	88593283	Frame_Shift_Del	C	-	p.A155fs
PRAD	TCGA-V1-A9ZI-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.R209fs
PRAD	TCGA-ZG-A9LY-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-HC-8265-01	DMXL1	ENST00000311085.8,ENST00000539542.1	chr5	118506410:118506975:118507472:118507664:118510955:118511032,	118507473	118507664	118507503	118507504	Frame_Shift_Ins	-	T	p.V2174fs
PRAD	TCGA-KC-A4BR-01	ITGA2B	ENST00000377068.3,ENST00000592226.1,ENST00000353281.4,ENST00000262407.5	chr17	42458246:42458429:42460860:42461072:42461261:42461314,	42460861	42461072	42461065	42461065	Frame_Shift_Del	C	-	p.D336fs
PRAD	TCGA-KK-A8IF-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208584	55208594	Frame_Shift_Del	TGAATGCTTAA	-	p.PECLN254fs
PRAD	TCGA-M7-A722-01	BBS2	ENST00000565781.1,ENST00000569192.1,ENST00000245157.5	chr16	56530878:56530991:56531654:56531792:56532348:56532480,	56531655	56531792	56531771	56531771	Frame_Shift_Del	T	-	p.I561fs
PRAD	TCGA-M7-A722-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.PP596fs
PRAD	TCGA-HC-A6AN-01	WDR1	ENST00000508949.1,ENST00000502962.1,ENST00000506246.1,ENST00000502702.1,ENST00000382451.2,ENST00000505543.1,ENST00000499869.2,ENST00000510848.1,ENST00000504739.1,ENST00000382452.2	chr4	10089399:10089564:10089916:10089997:10090287:10090365,	10089917	10089997	10089926	10089927	Frame_Shift_Del	CC	-	p.G236fs
PRAD	TCGA-HC-A6AN-01	CBS	ENST00000398158.1,ENST00000462349.1,ENST00000544202.1,ENST00000352178.5,ENST00000461686.1,ENST00000398165.3,ENST00000359624.3	chr21	44473971:44474093:44476912:44476997:44478254:44478363,	44476913	44476997	44476945	44476945	Frame_Shift_Del	T	-	p.H507fs
PRAD	TCGA-EJ-7328-01	P2RX6	ENST00000443995.3,ENST00000432930.1,ENST00000442475.1,ENST00000401443.1,ENST00000422210.1,ENST00000336296.2,ENST00000413302.2,ENST00000402329.3	chr22	21380299:21380365:21380540:21380618:21380708:21380886,	21380541	21380618	21380547	21380547	Frame_Shift_Del	T	-	p.F354fs
PRAD	TCGA-EJ-7328-01	P2RX6	ENST00000487342.1	chr22	21380093:21380187:21380299:21380618:21380708:21380865,	21380300	21380618	21380547	21380547	Frame_Shift_Del	T	-	p.F354fs
PRAD	TCGA-J4-A67T-01	KCNC3	ENST00000477616.1	chr19	50819289:50819348:50823479:50823606:50823849:50824041,	50823480	50823606	50823518	50823518	Frame_Shift_Del	G	-	p.A753fs
PRAD	TCGA-KK-A5A1-01	ITPR1	ENST00000456211.2,ENST00000443694.2,ENST00000357086.4,ENST00000423119.2,ENST00000302640.8,ENST00000354582.6	chr3	4776847:4777038:4808213:4808394:4810194:4810448,	4808214	4808394	4808388	4808388	Frame_Shift_Del	A	-	p.K1893fs
PRAD	TCGA-KK-A5A1-01	TMPRSS6	ENST00000406856.1,ENST00000381792.2,ENST00000346753.3,ENST00000406725.1,ENST00000442782.2	chr22	37480334:37480444:37480766:37480879:37482322:37482459,	37480767	37480879	37480809	37480809	Frame_Shift_Del	G	-	p.P348fs
PRAD	TCGA-KK-A8IM-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214774	108214774	Frame_Shift_Del	T	-	p.K530fs
PRAD	TCGA-M7-A720-01	RAPGEF3	ENST00000548919.1,ENST00000549151.1	chr12	48145698:48145752:48151648:48151861:48164639:48164817,	48151649	48151861	48151714	48151714	Frame_Shift_Del	G	-	p.R10fs
PRAD	TCGA-M7-A720-01	TRIP10	ENST00000595305.1,ENST00000600428.1,ENST00000600677.1,ENST00000596758.1,ENST00000595319.1,ENST00000313244.9,ENST00000596673.1,ENST00000313285.8,ENST00000600491.1	chr19	6742977:6743125:6743204:6743267:6743504:6743609,	6743205	6743267	6743220	6743221	Frame_Shift_Ins	-	G	p.A13fs
PRAD	TCGA-EJ-7325-01	DOCK2	ENST00000520836.1,ENST00000256935.8,ENST00000520181.1,ENST00000520908.1,ENST00000519628.1,ENST00000540750.1,ENST00000524185.1	chr5	169186720:169186779:169188522:169188629:169230061:169230210,	169188523	169188629	169188601	169188601	Frame_Shift_Del	A	-	p.I842fs
PRAD	TCGA-EJ-7325-01	PXN	ENST00000424649.2,ENST00000551327.1,ENST00000546532.1,ENST00000536957.1,ENST00000458477.2,ENST00000538144.1,ENST00000228307.7,ENST00000267257.7,ENST00000323871.5,ENST00000548912.1,ENST00000543331.1,ENST00000552550.1,ENST00000547983.1	chr12	120660665:120660802:120661520:120661636:120661953:120662180,	120661521	120661636	120661542	120661542	Frame_Shift_Del	C	-	p.G110fs
PRAD	TCGA-VP-A878-01	ZMYND11	ENST00000381607.4,ENST00000381602.4,ENST00000381591.1,ENST00000402736.1,ENST00000309776.4,ENST00000535374.1,ENST00000509513.2,ENST00000558098.2,ENST00000381584.1,ENST00000397959.3,ENST00000397962.3,ENST00000488275.1,ENST00000602682.1,ENST00000381604.4	chr10	286832:286910:287960:288079:292705:292913,	287961	288079	288038	288041	Frame_Shift_Del	CAAT	-	p.DN263fs
PRAD	TCGA-2A-AAYF-01	CORO2B	ENST00000566799.1	chr15	68871572:68871616:68937498:68937699:68987478:68987595,	68937499	68937699	68937526	68937541	Frame_Shift_Del	TCCAAGTTCCGGAATG	-	p.SKFRNV10fs
PRAD	TCGA-EJ-7784-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.A88fs
PRAD	TCGA-M7-A71Z-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85460525:85460676:85466684:85466876:85492132:85492326,	85466685	85466876	85466829	85466830	Frame_Shift_Ins	-	A	p.K947fs
PRAD	TCGA-V1-A9Z7-01	ABCA13	ENST00000484268.1,ENST00000435803.1	chr7	48407390:48407505:48411764:48412094:48413943:48414013,	48411765	48412094	48411971	48411972	Frame_Shift_Ins	-	T	p.AF3670fs
PRAD	TCGA-EJ-A6RA-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-CH-5737-01	PDZRN3	ENST00000263666.4,ENST00000479530.1,ENST00000462146.2,ENST00000535920.1,ENST00000492909.1,ENST00000494559.1,ENST00000466780.1,ENST00000466348.1	chr3	73434848:73434936:73437118:73437220:73438966:73439029,	73437119	73437220	73437147	73437148	Frame_Shift_Ins	-	A	p.I497fs
PRAD	TCGA-CH-5737-01	OSER1	ENST00000372970.2,ENST00000255174.2	chr20	42826187:42826379:42831600:42831714:42835520:42835638,	42831601	42831714	42831694	42831697	Frame_Shift_Del	ACAG	-	p.SV32fs
PRAD	TCGA-TK-A8OK-01	CELF3	ENST00000420342.1,ENST00000290583.4	chr1	151679144:151679210:151679620:151679770:151679982:151680124,	151679621	151679770	151679766	151679766	Frame_Shift_Del	G	-	p.T259fs
PRAD	TCGA-TK-A8OK-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351528	74351537	Frame_Shift_Del	CATTTTCCCC	-	p.GGKM134fs
PRAD	TCGA-EJ-7791-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
PRAD	TCGA-XQ-A8TB-01	EGFL7	ENST00000371698.3,ENST00000371699.1,ENST00000308874.7,ENST00000406555.3,ENST00000492002.1	chr9	139563008:139563125:139564057:139564173:139564365:139564461,	139564058	139564173	139564162	139564162	Frame_Shift_Del	C	-	p.A101fs
PRAD	TCGA-XQ-A8TB-01	DGKZ	ENST00000454345.1	chr11	46383144:46383256:46387793:46388534:46388840:46388949,	46387794	46388534	46388339	46388339	Frame_Shift_Del	G	-	p.W178fs
PRAD	TCGA-XQ-A8TB-01	COL4A5	ENST00000483338.1,ENST00000328300.6,ENST00000361603.2	chrX	107838738:107838831:107840227:107840298:107840606:107840798,	107840228	107840298	107840258	107840258	Frame_Shift_Del	A	-	p.E516fs
PRAD	TCGA-KK-A7B4-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579316	Frame_Shift_Ins	-	C	p.Y124fs
PRAD	TCGA-EJ-5525-01	NR1D2	ENST00000492552.1,ENST00000383773.4,ENST00000312521.4	chr3	23997527:23997616:24001161:24001306:24003467:24003825,	24001162	24001306	24001168	24001168	Frame_Shift_Del	T	-	p.F127fs
PRAD	TCGA-EJ-5525-01	NR1D2	ENST00000468700.1	chr3	23997527:23997616:24001161:24001415:24003467:24003825,	24001162	24001415	24001168	24001168	Frame_Shift_Del	T	-	p.F127fs
PRAD	TCGA-EJ-5525-01	ITSN1	ENST00000399367.3,ENST00000381291.4,ENST00000487427.1,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1,ENST00000381285.4,ENST00000381318.3	chr21	35191544:35191627:35195790:35195957:35199121:35199167,	35195791	35195957	35195922	35195922	Frame_Shift_Del	T	-	p.F1050fs
PRAD	TCGA-KK-A6E2-01	SLC38A7	ENST00000566953.1	chr16	58704948:58705148:58705999:58706147:58709843:58709926,58704016:58704071:58705999:58706147:58709843:58709926,	58706000	58706147	58706128	58706128	Frame_Shift_Del	G	-	p.T301fs
PRAD	TCGA-XJ-A9DK-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
PRAD	TCGA-XK-AAJT-01	NFATC4	ENST00000556279.1,ENST00000539237.2,ENST00000553469.1	chr14	24836707:24836859:24837517:24837646:24838704:24838876,	24837518	24837646	24837630	24837630	Frame_Shift_Del	G	-	p.A91fs
PRAD	TCGA-XK-AAJT-01	TBL1X	ENST00000380961.1,ENST00000407597.2,ENST00000536365.1,ENST00000424279.1,ENST00000217964.7	chrX	9652082:9652228:9656056:9656315:9659618:9659751,	9656057	9656315	9656280	9656280	Frame_Shift_Del	C	-	p.T194fs
PRAD	TCGA-XJ-A9DQ-01	PRRC2C	ENST00000367742.3,ENST00000476522.1	chr1	171454734:171454874:171481170:171481339:171482139:171482311,171454734:171454874:171481170:171481339:171482133:171482311,	171481171	171481339	171481317	171481318	Frame_Shift_Ins	-	T	p.R31fs
PRAD	TCGA-YL-A8SO-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61834099	61834099	Frame_Shift_Del	A	-	p.A2180fs
PRAD	TCGA-ZG-A9L2-01	EMC3	ENST00000245046.2	chr3	10004220:10005881:10011402:10011485:10012265:10012345,	10011403	10011485	10011467	10011468	Frame_Shift_Ins	-	T	p.D198fs
PRAD	TCGA-ZG-A9LU-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344887	33344888	Frame_Shift_Ins	-	A	p.Q1387fs
PRAD	TCGA-CH-5746-01	REEP4	ENST00000334530.5	chr8	21995763:21996065:21996151:21996306:21996438:21996574,21995763:21996065:21996151:21996306:21996928:21997042,	21996152	21996306	21996234	21996235	Frame_Shift_Ins	-	G	p.G209fs
PRAD	TCGA-HI-7170-01	PRR12	ENST00000418929.2	chr19	50097953:50101270:50102528:50103195:50104747:50105175,	50102529	50103195	50102809	50102809	Frame_Shift_Del	G	-	p.R1320fs
PRAD	TCGA-G9-6333-01	CAMK4	ENST00000514007.1	chr5	110679721:110679800:110710547:110710610:110712557:110712640,110679721:110679800:110710547:110710610:110730407:110730447,	110710548	110710610	110710553	110710554	Frame_Shift_Ins	-	A	p.EK82fs
PRAD	TCGA-EJ-7317-01	KIAA1257	ENST00000511438.1,ENST00000515659.1,ENST00000510149.1,ENST00000265068.5	chr3	128695855:128695909:128696887:128697028:128706458:128706672,	128696888	128697028	128696988	128696988	Frame_Shift_Del	T	-	p.E236fs
PRAD	TCGA-V1-A8ML-01	TRPV1	ENST00000571088.1,ENST00000574085.1,ENST00000399759.3,ENST00000399756.4,ENST00000174621.6	chr17	3489061:3489220:3491481:3491661:3493100:3493399,	3491482	3491661	3491535	3491535	Frame_Shift_Del	A	-	p.C389fs
PRAD	TCGA-HC-7738-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
PRAD	TCGA-V1-A9OY-01	SRGAP3	ENST00000360413.3,ENST00000383836.3	chr3	9025198:9027616:9032195:9032523:9034589:9034739,	9032196	9032523	9032419	9032420	Frame_Shift_Ins	-	G	p.G888fs
PRAD	TCGA-V1-A9OY-01	PQBP1	ENST00000465859.1	chrX	48759232:48759319:48759495:48759794:48760008:48760070,	48759496	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.R151fs
PRAD	TCGA-V1-A9OY-01	PQBP1	ENST00000443648.1,ENST00000447146.2,ENST00000473764.1,ENST00000396763.1,ENST00000477997.1,ENST00000474671.1,ENST00000376563.1,ENST00000218224.4	chrX	48759232:48759319:48759509:48759794:48760008:48760070,	48759510	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.R151fs
PRAD	TCGA-V1-A9OY-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938946	76938956	Frame_Shift_Del	TTAATTGGGGA	-	p.SPIK598fs
PRAD	TCGA-HC-7210-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000414883.1,ENST00000282641.2,ENST00000395495.1	chr10	52601621:52601752:52603747:52603882:52619601:52619745,	52603748	52603882	52603796	52603796	Frame_Shift_Del	T	-	p.K55fs
PRAD	TCGA-HC-A6AS-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214557031	214557031	Frame_Shift_Del	G	-	p.Q723fs
PRAD	TCGA-H9-A6BY-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514337	75514338	Frame_Shift_Ins	-	T	p.M674fs
PRAD	TCGA-CH-5765-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
PRAD	TCGA-KK-A8ID-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37673692:37673809:37676208:37676340:37680926:37681110,	37676209	37676340	37676253	37676254	Frame_Shift_Del	TA	-	p.L1003fs
PRAD	TCGA-CH-5751-01	ETV3	ENST00000368192.4	chr1	157090982:157095771:157103903:157104019:157105262:157105500,	157103904	157104019	157104016	157104017	Frame_Shift_Ins	-	T	p.L96fs
PRAD	TCGA-CH-5751-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462267	5462268	Frame_Shift_Ins	-	T	p.N583fs
PRAD	TCGA-KK-A7B1-01	SEPT1	ENST00000562152.1,ENST00000571393.1,ENST00000563957.2	chr16	30393595:30393686:30393845:30393919:30394055:30394134,	30393846	30393919	30393855	30393855	Frame_Shift_Del	G	-	p.G46fs
PRAD	TCGA-HC-7737-01	CASP5	ENST00000456094.1	chr11	104877809:104878061:104879533:104879780:104893856:104893863,	104879534	104879780	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
PRAD	TCGA-HC-7737-01	CASP5	ENST00000260315.3	chr11	104877809:104878061:104879533:104879707:104893856:104893863,	104879534	104879707	104879687	104879687	Frame_Shift_Del	T	-	p.R24fs
PRAD	TCGA-VN-A88L-01	TMPRSS5	ENST00000538955.1,ENST00000544634.1,ENST00000540540.1,ENST00000299882.5,ENST00000545579.1,ENST00000544476.1	chr11	113558809:113558996:113560486:113560639:113560952:113561095,	113560487	113560639	113560621	113560621	Frame_Shift_Del	G	-	p.L409fs
PRAD	TCGA-YJ-A8SW-01	ARHGEF7	ENST00000478679.1,ENST00000375737.5,ENST00000375739.2,ENST00000370623.3,ENST00000375741.2,ENST00000375723.1,ENST00000375736.4,ENST00000218789.5,ENST00000426073.2,ENST00000317133.5	chr13	111932884:111933024:111935485:111935710:111938493:111938583,	111935486	111935710	111935589	111935589	Frame_Shift_Del	C	-	p.T631fs
PRAD	TCGA-2A-A8VV-01	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785730	28785730	Frame_Shift_Del	A	-	p.K53fs
PRAD	TCGA-CH-5739-01	BTBD11	ENST00000420571.2,ENST00000280758.5,ENST00000357167.4,ENST00000490090.2	chr12	108006556:108006646:108008837:108008939:108010865:108010959,	108008838	108008939	108008872	108008879	Frame_Shift_Del	ACCCCGAG	-	p.HPE645fs
PRAD	TCGA-EJ-7330-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647319	145647320	Frame_Shift_Ins	-	A	p.LK813fs
PRAD	TCGA-KK-A8I5-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4,ENST00000463743.1	chr10	95070290:95070400:95072776:95072967:95076470:95076570,	95072777	95072967	95072931	95072931	Frame_Shift_Del	G	-	p.P1912fs
PRAD	TCGA-G9-7509-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-EJ-7321-01	CUBN	ENST00000377833.4	chr10	16949506:16949678:16955809:16955991:16957030:16957171,	16955810	16955991	16955876	16955876	Frame_Shift_Del	C	-	p.R2489fs
PRAD	TCGA-XJ-A9DX-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300931	18300932	Frame_Shift_Ins	-	G	p.G1499fs
PRAD	TCGA-XJ-A9DX-01	COL4A6	ENST00000372216.4,ENST00000394872.2,ENST00000334504.7	chrX	107412724:107412850:107413174:107413246:107413838:107413946,	107413175	107413246	107413200	107413201	Frame_Shift_Ins	-	C	p.D1180fs
PRAD	TCGA-CH-5761-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-CH-5761-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-CH-5761-01	GAPVD1	ENST00000265956.4,ENST00000495955.1,ENST00000312123.9,ENST00000394104.2,ENST00000474637.1,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128121698:128121771:128122806:128123004:128124884:128125025,	128122807	128123004	128122940	128122940	Frame_Shift_Del	C	-	p.A1366fs
PRAD	TCGA-CH-5761-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	22021827:22022016:22022432:22022521:22022696:22022910,	22022433	22022521	22022438	22022438	Frame_Shift_Del	A	-	p.T822fs
PRAD	TCGA-CH-5761-01	DVL2	ENST00000005340.5,ENST00000575458.1	chr17	7130973:7131102:7131295:7131363:7132287:7132354,	7131296	7131363	7131298	7131299	Frame_Shift_Ins	-	G	p.K367fs
PRAD	TCGA-EJ-A65F-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023940	64023941	Frame_Shift_Ins	-	T	p.E91fs
PRAD	TCGA-HC-8264-01	ARID3A	ENST00000263620.3	chr19	929261:929896:932417:932742:960091:960164,	932418	932742	932529	932529	Frame_Shift_Del	C	-	p.G160fs
PRAD	TCGA-KC-A7FD-01	NTN5	ENST00000600468.1	chr19	49167835:49168024:49173612:49174263:49176188:49176264,	49173613	49174263	49173724	49173724	Frame_Shift_Del	G	-	p.R174fs
PRAD	TCGA-KK-A8IB-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230655839:230655967:230656581:230656781:230656868:230656942,	230656582	230656781	230656648	230656649	Frame_Shift_Del	TC	-	p.E1375fs
PRAD	TCGA-EJ-7314-01	MCM3AP	ENST00000397708.1,ENST00000291688.1	chr21	47690314:47690477:47692474:47692743:47693301:47693499,	47692475	47692743	47692564	47692565	Frame_Shift_Del	GT	-	p.D792fs
PRAD	TCGA-J4-8200-01	ST8SIA4	ENST00000231461.5	chr5	100191806:100192100:100222046:100222304:100231357:100231487,	100222047	100222304	100222192	100222193	Frame_Shift_Ins	-	G	p.NF119fs
PRAD	TCGA-HC-8256-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128633708:128633818:128638710:128638779:128640056:128640188,	128638711	128638779	128638774	128638774	Frame_Shift_Del	A	-	p.F368fs
PRAD	TCGA-KK-A8IH-01	CAMKMT	ENST00000454433.1,ENST00000403853.3,ENST00000378494.3,ENST00000407131.1	chr2	44589243:44589284:44599854:44600027:44617379:44617444,	44599855	44600027	44599960	44599960	Frame_Shift_Del	G	-	p.E84fs
PRAD	TCGA-KK-A8IH-01	CYP2W1	ENST00000308919.7,ENST00000415893.1,ENST00000340150.6	chr7	1026742:1026881:1026982:1027167:1027912:1028054,	1026983	1027167	1027017	1027017	Frame_Shift_Del	C	-	p.G275fs
PRAD	TCGA-EJ-A65J-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830880	72830881	Frame_Shift_Ins	-	CT	p.Q1901fs
PRAD	TCGA-G9-6348-01	TMPRSS11D	ENST00000509584.1,ENST00000545541.1,ENST00000508409.1	chr4	68708275:68708343:68719785:68719904:68749643:68749678,	68719786	68719904	68719842	68719845	Frame_Shift_Del	ACTG	-	p.QL64fs
PRAD	TCGA-HC-7212-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
PRAD	TCGA-2A-A8VO-01	LCORL	ENST00000510451.1,ENST00000539056.1	chr4	17887690:17887784:17910716:17910968:17963525:17963655,17847312:17847524:17910716:17910968:17963525:17963655,	17910717	17910968	17910904	17910905	Frame_Shift_Del	TA	-	p.I165fs
PRAD	TCGA-HC-7077-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46751117	46751117	Frame_Shift_Del	G	-	p.P471fs
PRAD	TCGA-HC-7077-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.M75fs
PRAD	TCGA-HC-7077-01	MAZ	ENST00000219782.6	chr16	29819999:29820062:29820860:29821085:29821397:29821408,	29820861	29821085	29821006	29821006	Frame_Shift_Del	G	-	p.L475fs
PRAD	TCGA-HC-7736-01	RYK	ENST00000296084.4,ENST00000472234.1,ENST00000427044.2,ENST00000460933.1	chr3	133894777:133894883:133896784:133896917:133901845:133901877,	133896785	133896917	133896849	133896850	Frame_Shift_Del	AT	-	p.M225fs
PRAD	TCGA-CH-5753-01	FBXO4	ENST00000281623.3,ENST00000296812.2,ENST00000509134.1	chr5	41925422:41925600:41927114:41927350:41929798:41929926,	41927115	41927350	41927295	41927296	Frame_Shift_Del	TT	-	p.L124fs
PRAD	TCGA-ZG-A9L6-01	TANGO2	ENST00000450019.1,ENST00000327374.4,ENST00000399807.3,ENST00000430807.1,ENST00000434168.1,ENST00000456048.1,ENST00000401833.1,ENST00000447208.2,ENST00000420290.2	chr22	20039987:20040107:20049052:20049206:20050860:20050906,20043470:20043536:20049052:20049206:20050860:20050906,	20049053	20049206	20049058	20049058	Frame_Shift_Del	T	-	p.Y153fs
PRAD	TCGA-ZG-A9L6-01	TANGO2	ENST00000485715.2	chr22	20040959:20041074:20049052:20049204:20050860:20050906,	20049053	20049204	20049058	20049058	Frame_Shift_Del	T	-	p.Y153fs
PRAD	TCGA-ZG-A9L6-01	TANGO2	ENST00000490583.1	chr22	20043470:20043536:20049052:20049229:20050860:20050906,	20049053	20049229	20049058	20049058	Frame_Shift_Del	T	-	p.Y153fs
PRAD	TCGA-G9-7523-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253745	55253746	Frame_Shift_Ins	-	T	p.R497fs
PRAD	TCGA-2A-A8VX-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831173	72831189	Frame_Shift_Del	GGGATGTAGAAAGGGAA	-	p.FPFYIP1798fs
PRAD	TCGA-EJ-7123-01	CEP112	ENST00000535342.2,ENST00000582795.1,ENST00000580482.1,ENST00000580694.1,ENST00000392769.2,ENST00000317442.8,ENST00000581739.1,ENST00000537949.1	chr17	63685300:63685336:63739185:63739335:63746779:63746842,	63739186	63739335	63739297	63739297	Frame_Shift_Del	T	-	p.K832fs
PRAD	TCGA-EJ-5495-01	SDAD1	ENST00000395711.4,ENST00000507396.1,ENST00000395710.1,ENST00000356260.5	chr4	76886936:76886975:76888429:76888487:76890448:76890552,	76888430	76888487	76888458	76888458	Frame_Shift_Del	C	-	p.L339fs
PRAD	TCGA-J4-A83J-01	ERN1	ENST00000433197.3	chr17	62130139:62130339:62130631:62130731:62131609:62131799,	62130632	62130731	62130676	62130676	Frame_Shift_Del	T	-	p.Q671fs
PRAD	TCGA-V1-A8MK-01	SBF1	ENST00000380817.3,ENST00000399627.3,ENST00000348911.6,ENST00000390679.3	chr22	50904859:50904911:50905033:50905139:50905766:50905872,	50905034	50905139	50905121	50905121	Frame_Shift_Del	C	-	p.A190fs
PRAD	TCGA-QU-A6IP-01	ATE1	ENST00000423243.1,ENST00000224652.6,ENST00000543447.1	chr10	123629520:123629553:123659380:123659509:123670420:123670666,123629520:123629553:123659380:123659509:123661905:123662053,	123659381	123659509	123659394	123659395	Frame_Shift_Ins	-	GC	p.N11fs
PRAD	TCGA-ZG-A9M4-01	PPL	ENST00000590782.2	chr16	4953886:4954041:4960850:4960950:4986984:4987065,	4960851	4960950	4960866	4960867	Frame_Shift_Del	CT	-	p.E49fs
PRAD	TCGA-MG-AAMC-01	TECPR2	ENST00000558678.1,ENST00000359520.7	chr14	102916896:102916986:102918730:102918964:102931477:102931626,	102918731	102918964	102918941	102918941	Frame_Shift_Del	C	-	p.T1206fs
PRAD	TCGA-MG-AAMC-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-EJ-7786-01	SEPT1	ENST00000562152.1,ENST00000571393.1,ENST00000563957.2	chr16	30393595:30393686:30393845:30393919:30394055:30394134,	30393846	30393919	30393855	30393855	Frame_Shift_Del	G	-	p.G46fs
PRAD	TCGA-KK-A59V-01	TNFRSF18	ENST00000379268.2,ENST00000379265.5	chr1	1139778:1139866:1140749:1140872:1141764:1141951,	1140750	1140872	1140762	1140762	Frame_Shift_Del	C	-	p.V100fs
PRAD	TCGA-KK-A59V-01	KIF17	ENST00000375044.1,ENST00000247986.2,ENST00000400463.3	chr1	21012538:21012619:21013880:21014437:21016680:21016828,	21013881	21014437	21014273	21014273	Frame_Shift_Del	G	-	p.Q516fs
PRAD	TCGA-KK-A59V-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389836	11389837	Frame_Shift_Ins	-	A	p.G138fs
PRAD	TCGA-KK-A59V-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511377	20511377	Frame_Shift_Del	T	-	p.K132fs
PRAD	TCGA-KK-A59V-01	KIAA1211L	ENST00000397899.2	chr2	99413830:99414000:99438319:99440000:99443437:99443632,	99438320	99440000	99439044	99439045	Frame_Shift_Ins	-	C	p.G564fs
PRAD	TCGA-KK-A59V-01	APEH	ENST00000296456.5,ENST00000457042.1,ENST00000462439.1,ENST00000463616.1,ENST00000438011.1	chr3	49711921:49712054:49712615:49712742:49713126:49713220,	49712616	49712742	49712736	49712736	Frame_Shift_Del	G	-	p.R89fs
PRAD	TCGA-KK-A59V-01	EPHB1	ENST00000398015.3	chr3	134644657:134644722:134670212:134670894:134825289:134825445,	134670213	134670894	134670328	134670328	Frame_Shift_Del	G	-	p.R80fs
PRAD	TCGA-KK-A59V-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864163	129864163	Frame_Shift_Del	T	-	p.K540fs
PRAD	TCGA-KK-A59V-01	ACSL1	ENST00000454703.2,ENST00000506733.1,ENST00000437665.3,ENST00000281455.2,ENST00000504900.1,ENST00000513317.1,ENST00000504342.1,ENST00000515030.1,ENST00000507295.1	chr4	185694996:185695029:185697637:185697816:185698037:185698137,	185697638	185697816	185697797	185697797	Frame_Shift_Del	A	-	p.F199fs
PRAD	TCGA-KK-A59V-01	ZCCHC10	ENST00000508080.1,ENST00000509008.1,ENST00000511440.1,ENST00000513541.1	chr5	132334396:132334542:132335823:132335893:132342450:132342612,	132335824	132335893	132335879	132335879	Frame_Shift_Del	G	-	p.P95fs
PRAD	TCGA-KK-A59V-01	PRRT1	ENST00000211413.5	chr6	32117313:32117499:32118144:32118683:32119585:32119676,	32118145	32118683	32118447	32118447	Frame_Shift_Del	G	-	p.H87fs
PRAD	TCGA-KK-A59V-01	CAPN11	ENST00000542245.1,ENST00000398776.1	chr6	44140676:44140810:44140954:44141123:44143804:44143888,	44140955	44141123	44141052	44141052	Frame_Shift_Del	C	-	p.P255fs
PRAD	TCGA-KK-A59V-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76111999	76112000	Frame_Shift_Ins	-	G	p.R148fs
PRAD	TCGA-KK-A59V-01	NOS3	ENST00000297494.3,ENST00000461406.1,ENST00000475017.1	chr7	150706485:150706673:150707202:150707375:150707684:150707895,	150707203	150707375	150707211	150707211	Frame_Shift_Del	C	-	p.P842fs
PRAD	TCGA-KK-A59V-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167473	Frame_Shift_Del	A	-	p.K74fs
PRAD	TCGA-KK-A59V-01	CNIH2	ENST00000528852.1,ENST00000530519.1,ENST00000311445.6	chr11	66049729:66049798:66050203:66050251:66050505:66050618,	66050204	66050251	66050214	66050215	Frame_Shift_Ins	-	A	p.*54fs
PRAD	TCGA-KK-A59V-01	MARS	ENST00000550449.1	chr12	57882801:57882892:57883049:57883341:57883678:57883754,	57883050	57883341	57883053	57883053	Frame_Shift_Del	T	-	p.Y68fs
PRAD	TCGA-KK-A59V-01	MARS	ENST00000551431.1	chr12	57882801:57882892:57883049:57883128:57883989:57883999,	57883050	57883128	57883053	57883053	Frame_Shift_Del	T	-	p.Y68fs
PRAD	TCGA-KK-A59V-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.K266fs
PRAD	TCGA-KK-A59V-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542775	24542776	Frame_Shift_Ins	-	T	p.F79fs
PRAD	TCGA-KK-A59V-01	STXBP6	ENST00000323944.5,ENST00000358326.2	chr14	25326232:25326363:25443870:25444056:25518412:25518505,25326232:25326363:25443870:25444056:25479730:25479846,25326232:25326363:25443870:25444056:25519083:25519100,	25443871	25444056	25443930	25443931	Frame_Shift_Del	TT	-	p.K32fs
PRAD	TCGA-KK-A59V-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3,ENST00000411772.1	chr15	43730521:43730614:43733723:43733781:43738584:43738788,	43733724	43733781	43733757	43733757	Frame_Shift_Del	T	-	p.N1017fs
PRAD	TCGA-KK-A59V-01	ZFPM1	ENST00000562437.1,ENST00000319555.3,ENST00000569086.1	chr16	88552346:88552451:88555438:88555561:88580794:88580928,	88555439	88555561	88555465	88555465	Frame_Shift_Del	C	-	p.P59fs
PRAD	TCGA-KK-A59V-01	WDR81	ENST00000419248.1,ENST00000464528.1,ENST00000446363.1,ENST00000437219.2,ENST00000309182.5,ENST00000409644.1,ENST00000545662.1	chr17	1635959:1636125:1636820:1637510:1638865:1639011,	1636821	1637510	1637102	1637102	Frame_Shift_Del	G	-	p.G1592fs
PRAD	TCGA-KK-A59V-01	RAMP2	ENST00000587142.1	chr17	40913851:40913917:40914357:40914481:40914614:40914716,	40914358	40914481	40914372	40914372	Frame_Shift_Del	G	-	p.G61fs
PRAD	TCGA-KK-A59V-01	SECTM1	ENST00000580437.1,ENST00000583093.1	chr17	80282728:80282766:80285022:80285168:80291575:80291624,	80285023	80285168	80285100	80285101	Frame_Shift_Ins	-	G	p.G6fs
PRAD	TCGA-KK-A59V-01	MAP2K7	ENST00000397979.3,ENST00000468058.1,ENST00000545011.1,ENST00000397983.3	chr19	7975983:7976044:7976134:7976215:7976320:7976463,	7976135	7976215	7976149	7976149	Frame_Shift_Del	C	-	p.D332fs
PRAD	TCGA-KK-A59V-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562728	14562728	Frame_Shift_Del	C	-	p.T353fs
PRAD	TCGA-KK-A59V-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37210375	37210375	Frame_Shift_Del	A	-	p.E219fs
PRAD	TCGA-KK-A59V-01	KLK8	ENST00000347619.4	chr19	51499263:51499470:51501006:51501140:51504353:51504431,	51501007	51501140	51501092	51501093	Frame_Shift_Ins	-	G	p.E181fs
PRAD	TCGA-KK-A59V-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122567	35122567	Frame_Shift_Del	C	-	p.P157fs
PRAD	TCGA-KK-A59V-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122567	35122567	Frame_Shift_Del	C	-	p.P157fs
PRAD	TCGA-KK-A59V-01	MED15	ENST00000489651.1,ENST00000263205.7	chr22	20922852:20922918:20936897:20937034:20937126:20937254,20929399:20929519:20936897:20937034:20937126:20937254,	20936898	20937034	20936976	20936976	Frame_Shift_Del	C	-	p.P452fs
PRAD	TCGA-KK-A59V-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472963	70472963	Frame_Shift_Del	G	-	p.P48fs
PRAD	TCGA-HC-7078-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855927	Frame_Shift_Del	G	-	p.R297fs
PRAD	TCGA-HC-7078-01	DOCK9	ENST00000419908.1,ENST00000339416.2,ENST00000400228.2,ENST00000376460.1	chr13	99452541:99452732:99457252:99457463:99459914:99460061,	99457253	99457463	99457438	99457438	Frame_Shift_Del	T	-	p.K1861fs
PRAD	TCGA-TP-A8TT-01	MYH14	ENST00000425460.1,ENST00000262269.8,ENST00000598205.1,ENST00000440075.2,ENST00000596571.1,ENST00000599920.1,ENST00000601313.1,ENST00000376970.2	chr19	50760555:50760743:50762400:50762522:50763902:50763972,	50762401	50762522	50762446	50762446	Frame_Shift_Del	A	-	p.N760fs
PRAD	TCGA-J4-8198-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84375053	84375060	Frame_Shift_Del	TAAAGCTA	-	p.DSFT112fs
PRAD	TCGA-J4-8198-01	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78592384:78592456:78593114:78593311:78594252:78594342,	78593115	78593311	78593154	78593155	Frame_Shift_Ins	-	T	p.GF2186fs
PRAD	TCGA-XK-AAJR-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-ZG-A8QY-01	IFT172	ENST00000260570.3	chr2	27680505:27680622:27680707:27680843:27680992:27681090,	27680708	27680843	27680743	27680756	Frame_Shift_Del	CTGGATGGTGCTTC	-	p.GKHHPD1021fs
PRAD	TCGA-V1-A8MU-01	EHHADH	ENST00000231887.3,ENST00000456310.1	chr3	184909757:184911275:184922203:184922545:184935923:184936028,	184922204	184922545	184922509	184922509	Frame_Shift_Del	G	-	p.P202fs
PRAD	TCGA-CH-5769-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.P2802fs
PRAD	TCGA-CH-5769-01	ARHGAP15	ENST00000549436.1,ENST00000295095.6	chr2	144313976:144314054:144381701:144381836:144460987:144461093,	144381702	144381836	144381770	144381770	Frame_Shift_Del	T	-	p.F359fs
PRAD	TCGA-CH-5769-01	SLC25A25	ENST00000373069.5,ENST00000373064.5,ENST00000373066.5,ENST00000433501.1,ENST00000432073.2,ENST00000373068.2	chr9	130864648:130864760:130865959:130866118:130868007:130868160,	130865960	130866118	130866086	130866087	Frame_Shift_Ins	-	C	p.P237fs
PRAD	TCGA-CH-5769-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246441	56246442	Frame_Shift_Ins	-	C	p.G523fs
PRAD	TCGA-CH-5769-01	KIR2DL4	ENST00000463062.1	chr19	55320287:55320338:55324579:55324683:55325144:55325197,55317405:55317699:55324579:55324683:55325144:55325197,	55324580	55324683	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
PRAD	TCGA-CH-5769-01	KIR2DL4	ENST00000396284.2,ENST00000396289.5	chr19	55320287:55320338:55324579:55324750:55325144:55325197,	55324580	55324750	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
PRAD	TCGA-V1-A9OA-01	DPP4	ENST00000490286.1,ENST00000494507.1,ENST00000360534.3,ENST00000434918.2,ENST00000491591.1	chr2	162862254:162862319:162865071:162865171:162865750:162865805,	162865072	162865171	162865117	162865118	Frame_Shift_Ins	-	G	p.LV647fs
PRAD	TCGA-V1-A9OA-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5399028:5399200:5401224:5401353:5401527:5401658,	5401225	5401353	5401259	5401259	Frame_Shift_Del	G	-	p.R1543fs
PRAD	TCGA-G9-A9S4-01	OSBPL10	ENST00000438237.2,ENST00000396556.2,ENST00000429492.2	chr3	31743867:31744000:31774748:31774903:31789401:31789612,	31774749	31774903	31774769	31774769	Frame_Shift_Del	T	-	p.T359fs
PRAD	TCGA-G9-A9S4-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95841219:95841254:95844219:95844402:95848751:95848859,	95844220	95844402	95844240	95844240	Frame_Shift_Del	T	-	p.D197fs
PRAD	TCGA-G9-A9S4-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
PRAD	TCGA-KC-A4BV-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711886	89711887	Frame_Shift_Ins	-	C	p.Q169fs
PRAD	TCGA-FC-7961-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717695	89717696	Frame_Shift_Ins	-	T	p.*241fs
PRAD	TCGA-VP-A87D-01	SENP7	ENST00000394091.1,ENST00000314261.7,ENST00000348610.3,ENST00000394094.2,ENST00000358203.3,ENST00000394095.2	chr3	101085273:101085613:101086673:101086855:101090851:101090970,	101086674	101086855	101086791	101086800	Frame_Shift_Del	TTTAACATCC	-	p.KDVK284fs
PRAD	TCGA-VP-A87D-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579408	7579430	Frame_Shift_Del	CAGGGGCCAGGAGGGGGCTGGTG	-	p.APAPSWPL86fs
PRAD	TCGA-EJ-8472-01	PLGRKT	ENST00000223864.2	chr9	5361077:5361187:5361757:5361888:5431896:5431983,	5361758	5361888	5361787	5361787	Frame_Shift_Del	A	-	p.F61fs
PRAD	TCGA-VN-A88Q-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1	chr11	47859096:47859175:47861394:47861617:47861929:47862140,	47861395	47861617	47861461	47861461	Frame_Shift_Del	G	-	p.L228fs
PRAD	TCGA-EJ-7125-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000522181.1	chr8	92406024:92406079:92406163:92406267:92407289:92407877,	92406164	92406267	92406217	92406218	Frame_Shift_Ins	-	T	p.F629fs
PRAD	TCGA-EJ-7125-01	MIB1	ENST00000578646.1,ENST00000261537.6,ENST00000578260.1	chr18	19383867:19383975:19395576:19395774:19399455:19399519,	19395577	19395774	19395662	19395663	Frame_Shift_Ins	-	T	p.V522fs
PRAD	TCGA-G9-6499-01	CD63	ENST00000420846.3,ENST00000550050.1,ENST00000552692.1,ENST00000548898.1,ENST00000551173.1,ENST00000546939.1,ENST00000552164.1,ENST00000548160.1,ENST00000550776.1,ENST00000552067.1,ENST00000552754.1,ENST00000549117.1,ENST00000257857.4	chr12	56119602:56119680:56119904:56120045:56120483:56120543,	56119905	56120045	56119956	56119956	Frame_Shift_Del	A	-	p.N172fs
PRAD	TCGA-G9-6499-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41313097:41313323:41319793:41319934:41337101:41337244,	41319794	41319934	41319812	41319813	Frame_Shift_Ins	-	A	p.L1010fs
PRAD	TCGA-G9-6499-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831219	72831223	Frame_Shift_Del	GCAGG	-	p.TLL1786fs
PRAD	TCGA-ZG-A9KY-01	IRF6	ENST00000542854.1,ENST00000367021.3	chr1	209963011:209963130:209963839:209964232:209965613:209965772,	209963840	209964232	209963883	209963890	Frame_Shift_Del	TCTCTCAA	-	p.IER337fs
PRAD	TCGA-EJ-5531-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968044	5968044	Frame_Shift_Del	T	-	p.K729fs
PRAD	TCGA-EJ-5531-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832387	61832388	Frame_Shift_Ins	-	T	p.T2751fs
PRAD	TCGA-ZG-A9LS-01	PPIA	ENST00000494484.1	chr7	44838845:44838876:44838990:44839473:44840885:44840916,	44838991	44839473	44839402	44839402	Frame_Shift_Del	C	-	p.I97fs
PRAD	TCGA-ZG-A9LS-01	PPIA	ENST00000489459.1,ENST00000355968.6,ENST00000468812.1	chr7	44838990:44839079:44839300:44839473:44840022:44840142,44838990:44839079:44839300:44839473:44840885:44840916,	44839301	44839473	44839402	44839402	Frame_Shift_Del	C	-	p.I97fs
PRAD	TCGA-YL-A8S9-01	BNIP1	ENST00000231668.9,ENST00000352523.6	chr5	172573868:172573961:172578568:172578697:172581324:172581416,	172578569	172578697	172578611	172578611	Frame_Shift_Del	T	-	p.F76fs
PRAD	TCGA-YL-A8S9-01	DDX23	ENST00000308025.3,ENST00000550834.1	chr12	49231074:49231176:49231306:49231440:49231724:49231844,	49231307	49231440	49231321	49231321	Frame_Shift_Del	G	-	p.L247fs
PRAD	TCGA-YL-A8S9-01	DDX23	ENST00000547165.1	chr12	49230808:49230820:49231063:49231440:49231724:49231844,	49231064	49231440	49231321	49231321	Frame_Shift_Del	G	-	p.L247fs
PRAD	TCGA-HC-7231-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923074	150923075	Frame_Shift_Ins	-	A	p.S574fs
PRAD	TCGA-KK-A6DY-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765580	50765580	Frame_Shift_Del	G	-	p.Q692fs
PRAD	TCGA-EJ-7331-01	TRPM4	ENST00000598502.1,ENST00000355712.5,ENST00000595071.1,ENST00000596338.1,ENST00000595519.1,ENST00000598697.1,ENST00000252826.5	chr19	49693952:49694030:49699696:49700131:49703556:49703677,	49699697	49700131	49700013	49700013	Frame_Shift_Del	G	-	p.G844fs
PRAD	TCGA-EJ-7331-01	COL18A1	ENST00000359759.4,ENST00000459895.1,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46913108:46913139:46913414:46913489:46914458:46914485,	46913415	46913489	46913428	46913428	Frame_Shift_Del	A	-	p.E1179fs
PRAD	TCGA-YL-A8HO-01	NEURL4	ENST00000573651.1	chr17	7227132:7227331:7227426:7227585:7227713:7227799,	7227427	7227585	7227518	7227519	Frame_Shift_Del	CT	-	p.Q657fs
PRAD	TCGA-YL-A8HO-01	NEURL4	ENST00000571887.1,ENST00000573186.1,ENST00000315614.7,ENST00000570460.1,ENST00000399464.2	chr17	7227132:7227331:7227426:7227589:7227713:7227799,	7227427	7227589	7227518	7227519	Frame_Shift_Del	CT	-	p.Q657fs
PRAD	TCGA-G9-6498-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450110	29450110	Frame_Shift_Del	A	-	p.P174fs
PRAD	TCGA-G9-6498-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
PRAD	TCGA-HC-A4ZV-01	SYDE2	ENST00000341460.5	chr1	85634726:85634908:85643828:85643955:85647780:85648883,	85643829	85643955	85643927	85643927	Frame_Shift_Del	G	-	p.S858fs
PRAD	TCGA-V1-A8WS-01	AJAP1	ENST00000378191.4	chr1	4715104:4715514:4771959:4772759:4829912:4830000,	4771960	4772759	4772288	4772288	Frame_Shift_Del	C	-	p.P121fs
PRAD	TCGA-V1-A8WS-01	GGT7	ENST00000336431.5	chr20	33447245:33447442:33447771:33447845:33448056:33448124,	33447772	33447845	33447832	33447833	Frame_Shift_Del	GG	-	p.SQ252fs
PRAD	TCGA-CH-5788-01	MAPKAPK3	ENST00000357955.2	chr3	50654561:50654672:50654944:50655215:50677796:50677936,50654600:50654657:50654944:50655215:50677796:50677936,	50654945	50655215	50655021	50655042	Frame_Shift_Del	CAGGGGGGCCCTGTGCCCCCGC	-	p.QGGPVPPP9fs
PRAD	TCGA-G9-6373-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-G9-6373-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-J4-A67K-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436375	16436375	Frame_Shift_Del	G	-	p.P608fs
PRAD	TCGA-Y6-A9XI-01	TEX10	ENST00000374902.4	chr9	103064367:103064586:103065913:103066124:103070781:103070963,	103065914	103066124	103066107	103066108	Frame_Shift_Ins	-	C	p.L828fs
PRAD	TCGA-HC-A9TE-01	CHD7	ENST00000525508.1,ENST00000423902.2	chr8	61655590:61655656:61693558:61693989:61707544:61707686,	61693559	61693989	61693702	61693703	Frame_Shift_Ins	-	A	p.P604fs
PRAD	TCGA-ZG-A9L9-01	PHKA1	ENST00000373539.3,ENST00000373545.3	chrX	71812953:71813124:71819665:71819716:71821840:71821879,	71819666	71819716	71819685	71819685	Frame_Shift_Del	A	-	p.L976fs
PRAD	TCGA-G9-7521-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630642	158630642	Frame_Shift_Del	T	-	p.K26fs
PRAD	TCGA-YL-A9WL-01	HDAC6	ENST00000334136.5,ENST00000376619.2,ENST00000444343.2,ENST00000477528.1,ENST00000478095.1	chrX	48672946:48672973:48673081:48673147:48673240:48673300,	48673082	48673147	48673084	48673084	Frame_Shift_Del	G	-	p.V312fs
PRAD	TCGA-KK-A8II-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607543	46607543	Frame_Shift_Del	G	-	p.A578fs
PRAD	TCGA-KK-A6E0-01	ADAMTS14	ENST00000373207.1,ENST00000373208.1	chr10	72503303:72503437:72503821:72503945:72504981:72505062,	72503822	72503945	72503837	72503837	Frame_Shift_Del	A	-	p.K695fs
PRAD	TCGA-KK-A6E0-01	IFT81	ENST00000550156.1,ENST00000242591.5,ENST00000552912.1	chr12	110628724:110628853:110630421:110630511:110641668:110641755,	110630422	110630511	110630424	110630424	Frame_Shift_Del	G	-	p.V490fs
PRAD	TCGA-KK-A6E0-01	BCL2L13	ENST00000498133.1,ENST00000543133.1	chr22	18171839:18171908:18178906:18178976:18185008:18185129,18165979:18166087:18178906:18178976:18185008:18185129,	18178907	18178976	18178954	18178954	Frame_Shift_Del	T	-	p.V145fs
PRAD	TCGA-XK-AAJA-01	EEFSEC	ENST00000483457.1	chr3	127872510:127872666:127965678:127965886:127980970:127981067,	127965679	127965886	127965801	127965801	Frame_Shift_Del	A	-	p.K147fs
PRAD	TCGA-XK-AAJA-01	MBIP	ENST00000604336.1,ENST00000359527.7,ENST00000603139.1,ENST00000318473.7,ENST00000605579.1,ENST00000416007.4	chr14	36780782:36780931:36781164:36781230:36783717:36783814,	36781165	36781230	36781227	36781227	Frame_Shift_Del	T	-	p.N192fs
PRAD	TCGA-HC-7819-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4,ENST00000392202.3,ENST00000407449.1,ENST00000308862.6,ENST00000452564.1	chr2	209153452:209153542:209163364:209163503:209165660:209165818,	209163365	209163503	209163430	209163439	Frame_Shift_Del	CATCTGTCAG	-	p.TSVS326fs
PRAD	TCGA-G9-6379-01	MIS18BP1	ENST00000454990.1,ENST00000310806.4	chr14	45706899:45706924:45711236:45711721:45711963:45712077,	45711237	45711721	45711597	45711601	Frame_Shift_Del	AGTGG	-	p.TT260fs
PRAD	TCGA-EJ-5521-01	MKRN1	ENST00000255977.2,ENST00000474576.1,ENST00000496169.1,ENST00000475010.1,ENST00000443720.2	chr7	140156451:140156666:140158806:140159033:140159506:140159736,	140158807	140159033	140158897	140158897	Frame_Shift_Del	G	-	p.N227fs
PRAD	TCGA-V1-A9OF-01	MGA	ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42032254:42032401:42034743:42035370:42040834:42040910,	42034744	42035370	42035324	42035325	Frame_Shift_Del	TA	-	p.II1722fs
PRAD	TCGA-CH-5762-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4	chr17	7800400:7800612:7801288:7801420:7801813:7801913,	7801289	7801420	7801306	7801307	Frame_Shift_Ins	-	T	p.I705fs
PRAD	TCGA-G9-6371-01	TMCC2	ENST00000358024.3,ENST00000545499.1,ENST00000495538.1	chr1	205210641:205211172:205238077:205239012:205240247:205240383,	205238078	205239012	205238670	205238670	Frame_Shift_Del	A	-	p.D447fs
PRAD	TCGA-J4-A83M-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
PRAD	TCGA-ZG-A8QZ-01	GBP5	ENST00000343435.5,ENST00000370459.3	chr1	89727902:89728084:89728365:89728468:89729418:89729631,	89728366	89728468	89728373	89728374	Frame_Shift_Ins	-	T	p.K486fs
PRAD	TCGA-ZG-A8QZ-01	WDR48	ENST00000418020.1,ENST00000420940.2,ENST00000423296.2	chr3	39093510:39093564:39104540:39104681:39107301:39107380,	39104541	39104681	39104561	39104561	Frame_Shift_Del	T	-	p.D23fs
PRAD	TCGA-V1-A8WN-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P598fs
PRAD	TCGA-CH-5750-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206847	89206848	Frame_Shift_Ins	-	A	p.EK75fs
PRAD	TCGA-CH-5750-01	HERC2	ENST00000261609.7	chr15	28386884:28386992:28387383:28387539:28387972:28388098,	28387384	28387539	28387490	28387490	Frame_Shift_Del	C	-	p.C3865fs
PRAD	TCGA-CH-5750-01	SRCAP	ENST00000483083.1,ENST00000395059.2,ENST00000262518.4	chr16	30732033:30732299:30732509:30732797:30733442:30733567,	30732510	30732797	30732660	30732666	Frame_Shift_Del	CAGGCTA	-	p.PGY1135fs
PRAD	TCGA-KK-A6E4-01	ARNT2	ENST00000533983.1,ENST00000527771.1,ENST00000303329.4	chr15	80872751:80872890:80873579:80873745:80883908:80884045,	80873580	80873745	80873662	80873662	Frame_Shift_Del	C	-	p.S601fs
PRAD	TCGA-EJ-A65B-01	BCAR1	ENST00000569340.1	chr16	75269565:75269884:75271080:75271242:75276367:75276460,	75271081	75271242	75271144	75271144	Frame_Shift_Del	C	-	p.G215fs
PRAD	TCGA-G9-6366-01	PDZD4	ENST00000393758.2	chrX	153072196:153072295:153072733:153072824:153073814:153074050,153072196:153072295:153072733:153072824:153073796:153074050,	153072734	153072824	153072793	153072793	Frame_Shift_Del	C	-	p.A110fs
PRAD	TCGA-KK-A59Z-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.A88fs
PRAD	TCGA-V1-A9O5-06	DYNC1I2	ENST00000412370.1,ENST00000410079.3,ENST00000438879.1,ENST00000456808.1,ENST00000358002.6,ENST00000411953.1,ENST00000423910.1	chr2	172546656:172546773:172549286:172549404:172571837:172571860,172546656:172546773:172549286:172549404:172563796:172563887,172546656:172546773:172549286:172549404:172563742:172563887,	172549287	172549404	172549338	172549339	Frame_Shift_Ins	-	A	p.K54fs
PRAD	TCGA-EJ-5494-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-EJ-5494-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
PRAD	TCGA-KK-A6E6-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97858594:97858623:97858717:97858790:97860462:97860491,	97858718	97858790	97858738	97858738	Frame_Shift_Del	T	-	p.G799fs
PRAD	TCGA-ZG-A9L5-01	MTHFD1L	ENST00000367307.4,ENST00000443074.1	chr6	151206769:151206870:151208980:151209117:151226785:151226897,151206769:151206870:151208980:151209117:151219995:151220043,	151208981	151209117	151209057	151209057	Frame_Shift_Del	C	-	p.F240fs
PRAD	TCGA-ZG-A9L5-01	MTHFD1L	ENST00000367308.4	chr6	151206769:151206870:151208977:151209117:151219995:151220043,151206769:151206870:151208977:151209117:151226785:151226897,	151208978	151209117	151209057	151209057	Frame_Shift_Del	C	-	p.F240fs
PRAD	TCGA-ZG-A9L5-01	UBL7	ENST00000563081.1	chr15	74743776:74743861:74744636:74744719:74748892:74749012,74743142:74743200:74744636:74744719:74748892:74749012,	74744637	74744719	74744688	74744689	Frame_Shift_Del	CT	-	p.E112fs
PRAD	TCGA-EJ-7327-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21857834:21857957:21882161:21882366:21892084:21892249,	21882162	21882366	21882351	21882351	Frame_Shift_Del	T	-	p.D3634fs
PRAD	TCGA-VP-AA1N-01	WSCD1	ENST00000576083.1,ENST00000317744.5	chr17	5973933:5973972:5983690:5984405:5991309:5991424,	5983691	5984405	5984071	5984071	Frame_Shift_Del	C	-	p.S31fs
PRAD	TCGA-J9-A8CK-01	LIMCH1	ENST00000512946.1,ENST00000313860.7,ENST00000512820.1,ENST00000396595.3,ENST00000508466.1,ENST00000503057.1,ENST00000514096.1,ENST00000511496.1,ENST00000381753.4,ENST00000513024.1,ENST00000509277.1,ENST00000508501.1	chr4	41678398:41678479:41682022:41682115:41682971:41683076,	41682023	41682115	41682030	41682030	Frame_Shift_Del	A	-	p.Y792fs
PRAD	TCGA-H9-7775-01	DMTF1	ENST00000449088.3,ENST00000447863.1,ENST00000394702.3,ENST00000394703.5,ENST00000413276.2,ENST00000430405.3,ENST00000412139.2,ENST00000425705.2,ENST00000579677.1,ENST00000453049.1,ENST00000331242.7,ENST00000414194.2,ENST00000446796.2,ENST00000584619.1,ENST00000547146.2,ENST00000434534.1	chr7	86794249:86794366:86795798:86795921:86800310:86800333,	86795799	86795921	86795841	86795851	Frame_Shift_Del	ATAAAAGGCTT	-	p.HKRL51fs
PRAD	TCGA-XK-AAJU-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.K313fs
PRAD	TCGA-XK-AAJU-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.K313fs
PRAD	TCGA-CH-5764-01	WNT5A	ENST00000474267.1,ENST00000264634.4,ENST00000497027.1	chr3	55504020:55504578:55508364:55508657:55513341:55513592,	55508365	55508657	55508479	55508480	Frame_Shift_Ins	-	T	p.S190fs
PRAD	TCGA-EJ-5526-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55248077:55248179:55250637:55250820:55251852:55252063,	55250638	55250820	55250760	55250772	Frame_Shift_Del	CATTCCACCCAAA	-	p.LWVEW439fs
PRAD	TCGA-YL-A8HM-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1	chr11	57464232:57464345:57466030:57466890:57467337:57467835,	57466031	57466890	57466440	57466440	Frame_Shift_Del	A	-	p.E511fs
PRAD	TCGA-ZG-A8QW-01	PIK3C2G	ENST00000546003.1	chr12	18435640:18435693:18439787:18439863:18443788:18443946,	18439788	18439863	18439843	18439843	Frame_Shift_Del	T	-	p.S247fs
PRAD	TCGA-ZG-A8QW-01	PIK3C2G	ENST00000538779.1,ENST00000266497.5,ENST00000535651.1,ENST00000536967.1,ENST00000433979.1	chr12	18435640:18435693:18439780:18439863:18443788:18443946,	18439781	18439863	18439843	18439843	Frame_Shift_Del	T	-	p.S247fs
PRAD	TCGA-G9-7510-01	TRDN	ENST00000361029.4,ENST00000334268.4,ENST00000546248.1,ENST00000398178.3	chr6	123824863:123825046:123833447:123833507:123837285:123837351,	123833448	123833507	123833489	123833490	Frame_Shift_Ins	-	T	p.*190fs
PRAD	TCGA-G9-7510-01	COL18A1	ENST00000400337.2	chr21	46825293:46825388:46888155:46888700:46893808:46893895,	46888156	46888700	46888376	46888377	Frame_Shift_Del	CG	-	p.FA524fs
PRAD	TCGA-HC-7817-01	ATP6V1H	ENST00000524164.1,ENST00000359530.2,ENST00000521335.1	chr8	54745620:54745646:54754137:54754285:54755593:54755805,	54754138	54754285	54754237	54754238	Frame_Shift_Ins	-	C	p.Y5fs
PRAD	TCGA-KK-A7AY-01	TPD52L1	ENST00000528193.1,ENST00000534199.1,ENST00000392483.2,ENST00000392482.2,ENST00000534000.1,ENST00000368402.5,ENST00000532429.1,ENST00000532978.1,ENST00000524679.1,ENST00000527711.1,ENST00000368388.2,ENST00000534368.1,ENST00000304877.13	chr6	125541223:125541339:125550263:125550412:125569427:125569506,	125550264	125550412	125550359	125550359	Frame_Shift_Del	T	-	p.N77fs
PRAD	TCGA-KK-A7AP-01	MYLK3	ENST00000394809.4	chr16	46766119:46766580:46771622:46772055:46773968:46774059,	46771623	46772055	46772020	46772020	Frame_Shift_Del	C	-	p.E202fs
PRAD	TCGA-KK-A7AP-01	ZMYM3	ENST00000353904.2,ENST00000373981.1,ENST00000489332.1,ENST00000373998.1,ENST00000373984.3,ENST00000373988.1,ENST00000314425.5,ENST00000373982.1	chrX	70469875:70470053:70470281:70470576:70471027:70471094,	70470282	70470576	70470452	70470480	Frame_Shift_Del	CCCGGCCCTTTGTGACACACTTGAGCGTA	-	p.LRSSVSQRAG292fs
PRAD	TCGA-2A-A8W1-01	ODF2	ENST00000444993.2,ENST00000351030.3	chr9	131221845:131221936:131222828:131222945:131223220:131223289,	131222829	131222945	131222909	131222909	Frame_Shift_Del	A	-	p.I24fs
PRAD	TCGA-2A-A8W1-01	ODF2	ENST00000448249.3,ENST00000469582.2,ENST00000535026.1	chr9	131221845:131221936:131222791:131222945:131223220:131223289,	131222792	131222945	131222909	131222909	Frame_Shift_Del	A	-	p.I24fs
PRAD	TCGA-EJ-A7NJ-01	BCL6	ENST00000419510.2,ENST00000232014.4,ENST00000406870.2	chr3	187443286:187443417:187446147:187446332:187446837:187447809,187444518:187444686:187446147:187446332:187446837:187447809,	187446148	187446332	187446240	187446240	Frame_Shift_Del	G	-	p.P483fs
PRAD	TCGA-V1-A9O9-01	MAGED1	ENST00000375722.1,ENST00000485420.1	chrX	51636753:51636851:51637371:51637445:51638148:51638340,	51637372	51637445	51637410	51637410	Frame_Shift_Del	A	-	p.K4fs
PRAD	TCGA-V1-A9O9-01	MAGED1	ENST00000326587.7,ENST00000494718.1	chrX	51636753:51636851:51637364:51637445:51638148:51638340,	51637365	51637445	51637410	51637410	Frame_Shift_Del	A	-	p.K4fs
PRAD	TCGA-V1-A8WL-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
PRAD	TCGA-M7-A724-01	TP53BP2	ENST00000498843.1,ENST00000343537.7,ENST00000391878.2	chr1	223983875:223984292:223985916:223986379:223987600:223987749,	223985917	223986379	223986326	223986326	Frame_Shift_Del	T	-	p.K384fs
PRAD	TCGA-M7-A724-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968044	5968044	Frame_Shift_Del	T	-	p.K729fs
PRAD	TCGA-M7-A724-01	UXT	ENST00000460840.1,ENST00000335890.2,ENST00000333119.3,ENST00000485641.1	chrX	47511203:47511294:47511479:47511543:47516581:47516684,	47511480	47511543	47511500	47511500	Frame_Shift_Del	G	-	p.H146fs
PRAD	TCGA-G9-6364-01	CD68	ENST00000380498.6	chr17	7482955:7483044:7483208:7483645:7483783:7483797,	7483209	7483645	7483262	7483263	Frame_Shift_Del	CA	-	p.H62fs
PRAD	TCGA-G9-6364-01	CD68	ENST00000584502.1	chr17	7482955:7483044:7483166:7483645:7483783:7483797,	7483167	7483645	7483262	7483263	Frame_Shift_Del	CA	-	p.H62fs
PRAD	TCGA-KC-A7F6-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579402	7579418	Frame_Shift_Del	AGATGACAGGGGCCAGG	-	p.SWPLSS90fs
PRAD	TCGA-VN-A88R-01	ERBB2	ENST00000406381.2,ENST00000584450.1,ENST00000445658.2,ENST00000578373.1,ENST00000541774.1,ENST00000578199.1,ENST00000540042.1,ENST00000269571.5,ENST00000584601.1,ENST00000540147.1	chr17	37872131:37872192:37872553:37872686:37872767:37872858,	37872554	37872686	37872561	37872561	Frame_Shift_Del	G	-	p.E477fs
PRAD	TCGA-HC-7080-01	XRCC6	ENST00000405878.1,ENST00000360079.3,ENST00000359308.4	chr22	42018000:42018090:42024121:42024234:42032116:42032255,	42024122	42024234	42024154	42024155	Frame_Shift_Ins	-	T	p.F39fs
PRAD	TCGA-YL-A8SF-01	SLC9A3	ENST00000264938.3,ENST00000514375.1	chr5	474997:475247:475675:475786:476134:476207,	475676	475786	475733	475734	Frame_Shift_Ins	-	A	p.R731fs
PRAD	TCGA-CH-5740-01	VRK3	ENST00000596814.1,ENST00000377011.2,ENST00000601341.1,ENST00000600137.1,ENST00000601912.1,ENST00000443401.2	chr19	50504046:50504111:50510825:50511083:50519280:50519420,	50510826	50511083	50511057	50511058	Frame_Shift_Ins	-	G	p.K106fs
PRAD	TCGA-CH-5751-01	ETV3	ENST00000368192.4	chr1	157090982:157095771:157103903:157104019:157105262:157105500,	157103904	157104019	157104016	157104017	Frame_Shift_Ins	-	T	p.Y96fs
PRAD	TCGA-CH-5751-01	NOL8	ENST00000360868.3,ENST00000535387.1,ENST00000544867.1,ENST00000442668.2,ENST00000545558.1,ENST00000542053.1,ENST00000536593.1,ENST00000358855.4,ENST00000545444.1,ENST00000432670.2	chr9	95068034:95068112:95069167:95069306:95072452:95072543,	95069168	95069306	95069196	95069199	Frame_Shift_Del	TGTT	-	p.NR932fs
PRAD	TCGA-CH-5762-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4	chr17	7800400:7800612:7801288:7801420:7801813:7801913,	7801289	7801420	7801306	7801307	Frame_Shift_Ins	-	T	p.Y706fs
PRAD	TCGA-CH-5769-01	DIMT1	ENST00000506390.1	chr5	61686702:61686809:61687997:61688061:61688752:61688817,61687543:61687833:61687997:61688061:61688752:61688817,	61687998	61688061	61688029	61688029	Frame_Shift_Del	T	-	p.N254fs
PRAD	TCGA-EJ-5494-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448689	155448689	Frame_Shift_Del	A	-	p.F1324fs
PRAD	TCGA-EJ-5505-01	RALGAPA2	ENST00000202677.7,ENST00000430436.1	chr20	20585818:20586056:20591958:20592070:20596686:20596835,	20591959	20592070	20591999	20592002	Frame_Shift_Del	TTTA	-	p.IK586fs
PRAD	TCGA-EJ-5531-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61832387	61832388	Frame_Shift_Ins	-	T	p.I2751fs
PRAD	TCGA-EJ-7125-01	MIB1	ENST00000578646.1,ENST00000261537.6,ENST00000578260.1	chr18	19383867:19383975:19395576:19395774:19399455:19399519,	19395577	19395774	19395662	19395663	Frame_Shift_Ins	-	T	p.L523fs
PRAD	TCGA-EJ-7781-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32091103	32091104	Frame_Shift_Ins	-	C	p.T2517fs
PRAD	TCGA-EJ-7782-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693894	47693895	Frame_Shift_Ins	-	A	p.K537fs
PRAD	TCGA-EJ-7786-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748185	43748186	Frame_Shift_Ins	-	T	p.M869fs
PRAD	TCGA-EJ-8469-01	FAS	ENST00000352159.4,ENST00000477270.1,ENST00000487314.1,ENST00000357339.2,ENST00000313771.5,ENST00000355740.2,ENST00000355279.2,ENST00000371857.3	chr10	90767456:90767594:90768645:90768754:90770295:90770357,	90768646	90768754	90768708	90768708	Frame_Shift_Del	T	-	p.F134fs
PRAD	TCGA-EJ-8472-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32090268	32090268	Frame_Shift_Del	C	-	p.H2238fs
PRAD	TCGA-FC-7961-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717695	89717696	Frame_Shift_Ins	-	T	p.F241fs
PRAD	TCGA-G9-6348-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060635	56060635	Frame_Shift_Del	T	-	p.K42fs
PRAD	TCGA-G9-6499-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831219	72831223	Frame_Shift_Del	GCAGG	-	p.LL1787fs
PRAD	TCGA-HC-7210-01	A1CF	ENST00000374001.2,ENST00000373997.3,ENST00000373993.1,ENST00000414883.1,ENST00000282641.2,ENST00000395495.1	chr10	52601621:52601752:52603747:52603882:52619601:52619745,	52603748	52603882	52603796	52603796	Frame_Shift_Del	T	-	p.K62fs
PRAD	TCGA-HC-7231-01	SETDB1	ENST00000368969.4,ENST00000271640.5,ENST00000498193.1	chr1	150921845:150922001:150922933:150923566:150923840:150923957,	150922934	150923566	150923074	150923075	Frame_Shift_Ins	-	A	p.P575fs
PRAD	TCGA-J4-8198-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84375053	84375060	Frame_Shift_Del	TAAAGCTA	-	p.SFT113fs
PRAD	TCGA-J4-8198-01	NAV3	ENST00000266692.7,ENST00000552895.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78592384:78592456:78593114:78593311:78594252:78594342,	78593115	78593311	78593154	78593155	Frame_Shift_Ins	-	T	p.F2187fs
PRAD	TCGA-KC-A4BV-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711886	89711887	Frame_Shift_Ins	-	C	p.P169fs
PRAD	TCGA-KK-A7B4-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579315	7579316	Frame_Shift_Ins	-	C	p.C124fs
PRAD	TCGA-KK-A8IF-01	TFAP2C	ENST00000201031.2,ENST00000544508.1	chr20	55206860:55206912:55208408:55208625:55209205:55209324,	55208409	55208625	55208584	55208594	Frame_Shift_Del	TGAATGCTTAA	-	p.ECLN255fs
PRAD	TCGA-M7-A720-01	TRIP10	ENST00000595305.1,ENST00000600428.1,ENST00000600677.1,ENST00000596758.1,ENST00000595319.1,ENST00000313244.9,ENST00000596673.1,ENST00000313285.8,ENST00000600491.1	chr19	6742977:6743125:6743204:6743267:6743504:6743609,	6743205	6743267	6743220	6743221	Frame_Shift_Ins	-	G	p.R13fs
PRAD	TCGA-QU-A6IP-01	ATE1	ENST00000423243.1,ENST00000224652.6,ENST00000543447.1	chr10	123629520:123629553:123659380:123659509:123670420:123670666,123629520:123629553:123659380:123659509:123661905:123662053,	123659381	123659509	123659394	123659395	Frame_Shift_Ins	-	GC	p.P11fs
PRAD	TCGA-SU-A7E7-01	HSP90AB1	ENST00000353801.3	chr6	44214823:44214932:44216353:44216513:44217113:44217320,	44216354	44216513	44216408	44216409	Frame_Shift_Del	TT	-	p.F15fs
PRAD	TCGA-VN-A88R-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828649	72828650	Frame_Shift_Ins	-	A	p.L2644fs
PRAD	TCGA-VP-A878-01	ZMYND11	ENST00000381607.4,ENST00000381602.4,ENST00000381591.1,ENST00000402736.1,ENST00000309776.4,ENST00000535374.1,ENST00000509513.2,ENST00000558098.2,ENST00000381584.1,ENST00000397959.3,ENST00000397962.3,ENST00000488275.1,ENST00000602682.1,ENST00000381604.4	chr10	286832:286910:287960:288079:292705:292913,	287961	288079	288038	288041	Frame_Shift_Del	CAAT	-	p.DN303fs
PRAD	TCGA-YL-A8SK-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109382805	109382805	Frame_Shift_Del	T	-	p.I1937fs
PRAD	TCGA-ZG-A8QY-01	IFT172	ENST00000260570.3	chr2	27680505:27680622:27680707:27680843:27680992:27681090,	27680708	27680843	27680743	27680756	Frame_Shift_Del	CTGGATGGTGCTTC	-	p.KHHPD1022fs
READ	TCGA-EI-6507-01	ABCB9	ENST00000540285.1,ENST00000537276.1,ENST00000546289.1,ENST00000426173.2	chr12	123419819:123419978:123424657:123424831:123428937:123429066,	123424658	123424831	123424719	123424719	Frame_Shift_Del	C	-	p.G561fs
READ	TCGA-EI-6882-01	ABCB9	ENST00000540285.1,ENST00000537276.1,ENST00000546289.1,ENST00000426173.2	chr12	123419819:123419978:123424657:123424831:123428937:123429066,	123424658	123424831	123424729	123424729	Frame_Shift_Del	G	-	p.L558fs
READ	TCGA-EI-6882-01	ABCC12	ENST00000534418.1,ENST00000532494.1,ENST00000311303.3,ENST00000529084.1,ENST00000497206.2,ENST00000416054.1	chr16	48134782:48134920:48138052:48138279:48139049:48139247,	48138053	48138279	48138148	48138148	Frame_Shift_Del	A	-	p.M936fs
READ	TCGA-EI-6882-01	ACADVL	ENST00000542255.2,ENST00000356839.5,ENST00000583850.1,ENST00000543245.2,ENST00000322910.5,ENST00000579546.1,ENST00000350303.5,ENST00000583858.1	chr17	7127005:7127049:7127131:7127194:7127286:7127388,	7127132	7127194	7127173	7127173	Frame_Shift_Del	G	-	p.M437fs
READ	TCGA-EI-6882-01	ACADVL	ENST00000585203.2	chr17	7127005:7127049:7127131:7127177:7127286:7127388,	7127132	7127177	7127173	7127173	Frame_Shift_Del	G	-	p.M437fs
READ	TCGA-DC-4749-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.C392fs
READ	TCGA-EI-6509-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520469	49520470	Frame_Shift_Ins	-	T	p.I22fs
READ	TCGA-EI-6882-01	AGRN	ENST00000379370.2	chr1	984615:984831:984945:985175:985282:985417,	984946	985175	984981	984981	Frame_Shift_Del	G	-	p.R1517fs
READ	TCGA-EI-6507-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.T304fs
READ	TCGA-EI-6507-01	ALOX12B	ENST00000319144.4	chr17	7976471:7976636:7979492:7979662:7979974:7980061,7978912:7979034:7979492:7979662:7979974:7980061,	7979493	7979662	7979578	7979579	Frame_Shift_Ins	-	G	p.N483fs
READ	TCGA-EI-6507-01	ALOX12B	ENST00000319144.4,ENST00000583276.1	chr17	7980307:7980511:7982713:7982857:7983086:7983259,	7982714	7982857	7982767	7982767	Frame_Shift_Del	G	-	p.L340fs
READ	TCGA-EI-6507-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
READ	TCGA-EI-6882-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.R265fs
READ	TCGA-EI-6507-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114276086	114276087	Frame_Shift_Ins	-	CA	p.S2104fs
READ	TCGA-EI-6917-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256319	9256320	Frame_Shift_Ins	-	A	p.D995fs
READ	TCGA-EI-6510-01	APC	ENST00000457016.1,ENST00000508624.1,ENST00000508376.2,ENST00000512211.2,ENST00000257430.4	chr5	112116502:112116600:112128142:112128226:112136975:112137080,	112128143	112128226	112128184	112128188	Frame_Shift_Del	TCGTA	-	p.229_230del
READ	TCGA-EI-6882-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831137	58831137	Frame_Shift_Del	A	-	p.E777fs
READ	TCGA-EI-6882-01	ATP11B	ENST00000466758.1,ENST00000490303.1,ENST00000323116.5,ENST00000498086.1	chr3	182602540:182602686:182603738:182603798:182605373:182605501,	182603739	182603798	182603763	182603763	Frame_Shift_Del	T	-	p.Q893fs
READ	TCGA-EI-6507-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327163	16327163	Frame_Shift_Del	G	-	p.P460fs
READ	TCGA-EI-6882-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
READ	TCGA-EI-6882-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
READ	TCGA-EI-6882-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
READ	TCGA-EI-6507-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755543:74755616:74755877:74756062:74756258:74756409,	74755878	74756062	74755993	74755993	Frame_Shift_Del	C	-	p.E137fs
READ	TCGA-EI-6507-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74755993	74755993	Frame_Shift_Del	C	-	p.E137fs
READ	TCGA-EI-6508-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770651	118770652	Frame_Shift_Ins	-	G	p.P1127fs
READ	TCGA-AG-4022-01	BCL9L	ENST00000526143.1	chr11	118778191:118778311:118778978:118779364:118795946:118796317,	118778979	118779364	118779352	118779352	Frame_Shift_Del	G	-	p.R14fs
READ	TCGA-AF-6136-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878041	Frame_Shift_Del	T	-	p.T10fs
READ	TCGA-EI-6507-01	CASP8	ENST00000432109.2,ENST00000358485.4,ENST00000339403.6	chr2	202137360:202137499:202139611:202139676:202141549:202141627,202137620:202137665:202139611:202139676:202141549:202141627,	202139612	202139676	202139625	202139626	Frame_Shift_Ins	-	G	p.C262fs
READ	TCGA-EI-6507-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1,ENST00000341455.6	chr3	56593596:56593622:56597711:56598153:56600621:56600734,	56597712	56598153	56598018	56598018	Frame_Shift_Del	A	-	p.H136fs
READ	TCGA-EI-6514-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274159	80274160	Frame_Shift_Ins	-	T	p.A175fs
READ	TCGA-EI-6514-01	CD7	ENST00000312648.3,ENST00000583376.1	chr17	80272749:80273307:80274070:80274285:80274542:80274787,	80274071	80274285	80274162	80274162	Frame_Shift_Del	G	-	p.P174fs
READ	TCGA-EI-6882-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889836	100889837	Frame_Shift_Ins	-	C	p.N123fs
READ	TCGA-DC-5869-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618971	618971	Frame_Shift_Del	G	-	p.H530fs
READ	TCGA-BM-6198-01	CDIPT	ENST00000569956.1,ENST00000219789.6,ENST00000563893.1,ENST00000570016.1,ENST00000564296.1,ENST00000561555.1,ENST00000566113.1	chr16	29870616:29870655:29870762:29870844:29871901:29871983,	29870763	29870844	29870783	29870784	Frame_Shift_Ins	-	G	p.H159fs
READ	TCGA-EI-6917-01	CEP70	ENST00000489254.1	chr3	138251355:138251412:138256019:138256189:138289159:138289340,138251355:138251412:138256019:138256189:138310695:138310798,	138256020	138256189	138256103	138256104	Frame_Shift_Ins	-	T	p.K184fs
READ	TCGA-EI-6882-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001304	11001305	Frame_Shift_Ins	-	C	p.S652fs
READ	TCGA-EI-6882-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001304	11001305	Frame_Shift_Ins	-	C	p.S652fs
READ	TCGA-EI-6882-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
READ	TCGA-EI-6507-01	COG3	ENST00000349995.5	chr13	46083826:46083951:46085899:46085989:46090277:46090398,	46085900	46085989	46085968	46085969	Frame_Shift_Del	AG	-	p.596_596del
READ	TCGA-AF-2693-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-AF-6136-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-AF-6672-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-AG-4021-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-AG-4022-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-AH-6644-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-CI-6619-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-CI-6624-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-CL-4957-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-DC-5337-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-DC-6681-01	COL18A1	ENST00000359759.4,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46923929:46923968:46924329:46924470:46925047:46925192,	46924330	46924470	46924426	46924434	Frame_Shift_Del	GGCCCCCCA	-	p.941_942del
READ	TCGA-AG-4021-01	COMMD1	ENST00000311832.5	chr2	62132892:62132993:62227835:62228117:62362965:62363114,	62227836	62228117	62228069	62228070	Frame_Shift_Del	AC	-	p.138_138del
READ	TCGA-CI-6620-01	CRISPLD2	ENST00000563066.1,ENST00000262424.5,ENST00000566431.1,ENST00000567845.1,ENST00000569262.1,ENST00000564567.1	chr16	84879391:84879510:84882990:84883123:84884173:84884289,	84882991	84883123	84883102	84883103	Frame_Shift_Ins	-	T	p.P157fs
READ	TCGA-F5-6571-01	CYP4Z1	ENST00000471598.1,ENST00000334194.3	chr1	47581200:47581265:47582321:47582404:47583437:47583736,	47582322	47582404	47582359	47582359	Frame_Shift_Del	A	-	p.E435fs
READ	TCGA-EI-6882-01	DDHD1	ENST00000323669.5,ENST00000357758.3	chr14	53558628:53558650:53560033:53560162:53570400:53570574,	53560034	53560162	53560050	53560050	Frame_Shift_Del	T	-	p.L383fs
READ	TCGA-DY-A1DC-01	DPEP1	ENST00000421184.1,ENST00000564281.1,ENST00000261615.4,ENST00000393092.3,ENST00000565249.1	chr16	89702315:89702448:89702671:89702804:89702940:89703055,	89702672	89702804	89702769	89702770	Frame_Shift_Ins	-	C	p.Y112fs
READ	TCGA-EI-6507-01	DZIP3	ENST00000479138.1	chr3	108308580:108308686:108324181:108324285:108326935:108327005,108308901:108308943:108324181:108324285:108326935:108327005,	108324182	108324285	108324275	108324275	Frame_Shift_Del	T	-	p.E7fs
READ	TCGA-EI-6507-01	ECHS1	ENST00000368547.3	chr10	135178202:135178229:135179479:135179599:135180392:135180497,	135179480	135179599	135179533	135179534	Frame_Shift_Ins	-	T	p.I229fs
READ	TCGA-EI-6507-01	EIF2A	ENST00000477551.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150290282:150290316:150299404:150299533:150300986:150301052,150293435:150293549:150299404:150299533:150300986:150301052,	150299405	150299533	150299509	150299510	Frame_Shift_Ins	-	A	p.D534fs
READ	TCGA-EI-6882-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.S788fs
READ	TCGA-EI-6514-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981471:201981564:201981767:201981887:201982074:201982164,	201981768	201981887	201981773	201981774	Frame_Shift_Ins	-	GC	p.G162fs
READ	TCGA-AH-6643-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000367284.5	chr1	201982309:201982426:201982956:201983152:201984336:201984922,	201982957	201983152	201983018	201983019	Frame_Shift_Ins	-	G	p.N289fs
READ	TCGA-EI-6507-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71235776	71235776	Frame_Shift_Del	A	-	p.M800fs
READ	TCGA-EI-6507-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71235776	71235776	Frame_Shift_Del	A	-	p.M800fs
READ	TCGA-AF-5654-01	FAM9A	ENST00000543214.1,ENST00000381003.3	chrX	8764308:8764423:8766190:8766222:8766399:8766520,	8766191	8766222	8766191	8766199	Frame_Shift_Del	CTGCAATAT	-	p.122_125del
READ	TCGA-EI-6882-01	FARSA	ENST00000586280.1,ENST00000588965.1,ENST00000314606.4,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13039568:13039661:13041036:13041155:13041242:13041341,	13041037	13041155	13041103	13041103	Frame_Shift_Del	C	-	p.G146fs
READ	TCGA-AG-3731-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187540871	187540871	Frame_Shift_Del	A	-	p.V2290fs
READ	TCGA-EI-6884-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290521	108290522	Frame_Shift_Ins	-	A	p.L474fs
READ	TCGA-EI-6884-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290521	108290522	Frame_Shift_Ins	-	A	p.L474fs
READ	TCGA-EI-6506-01	FOXP1	ENST00000493089.1,ENST00000498215.1,ENST00000468577.1,ENST00000475937.1,ENST00000318789.4,ENST00000472382.1,ENST00000485326.2,ENST00000497553.1,ENST00000491238.1,ENST00000327590.4	chr3	71096092:71096246:71101687:71101777:71102786:71102924,	71101688	71101777	71101700	71101701	Frame_Shift_Del	TT	-	p.166_167del
READ	TCGA-EI-6882-01	FUCA2	ENST00000438118.2	chr6	143818525:143818634:143823068:143823259:143828373:143828561,	143823069	143823259	143823176	143823176	Frame_Shift_Del	A	-	p.E350fs
READ	TCGA-EI-6882-01	GFRA1	ENST00000544592.1,ENST00000369234.4,ENST00000355422.6,ENST00000439649.3,ENST00000369236.1	chr10	117853212:117853347:117856165:117856275:117884731:117885068,	117856166	117856275	117856253	117856254	Frame_Shift_Ins	-	A	p.T260fs
READ	TCGA-AG-3731-01	GPHN	ENST00000315266.5,ENST00000478722.1,ENST00000544752.2,ENST00000305960.9,ENST00000543237.1	chr14	67490349:67490392:67525365:67525503:67555699:67555792,	67525366	67525503	67525469	67525470	Frame_Shift_Ins	-	C	p.T370fs
READ	TCGA-F5-6814-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986250	2986251	Frame_Shift_Ins	-	A	p.G21fs
READ	TCGA-EI-6507-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186987	100186987	Frame_Shift_Del	G	-	p.M325fs
READ	TCGA-EI-6507-01	ICAM5	ENST00000586480.1,ENST00000221980.4	chr19	10402164:10402485:10402710:10402998:10403287:10403542,	10402711	10402998	10402955	10402955	Frame_Shift_Del	G	-	p.L306fs
READ	TCGA-EI-6882-01	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040281	103040281	Frame_Shift_Del	A	-	p.T27fs
READ	TCGA-EI-6507-01	IMPDH2	ENST00000442157.1	chr3	49065143:49065349:49065863:49065965:49066190:49066239,	49065864	49065965	49065922	49065922	Frame_Shift_Del	G	-	p.P64fs
READ	TCGA-EI-6882-01	INPP5F	ENST00000361976.2,ENST00000369083.3	chr10	121551380:121551548:121551668:121551725:121556226:121556425,	121551669	121551725	121551680	121551681	Frame_Shift_Ins	-	T	p.R208fs
READ	TCGA-EI-6507-01	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33200813:33201052:33208812:33209012:33209172:33209313,	33208813	33209012	33208969	33208969	Frame_Shift_Del	T	-	p.K438fs
READ	TCGA-BM-6198-01	ITGB3BP	ENST00000462285.1	chr1	63955773:63955889:63974198:63974241:63988799:63988851,63920575:63920639:63974198:63974241:63988799:63988851,	63974199	63974241	63974219	63974219	Frame_Shift_Del	C	-	p.D10fs
READ	TCGA-AG-3742-01	KCNH8	ENST00000452398.1	chr3	19190025:19190287:19295145:19295379:19322689:19322821,	19295146	19295379	19295236	19295236	Frame_Shift_Del	C	-	p.A56fs
READ	TCGA-EI-6510-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137726985	137726985	Frame_Shift_Del	A	-	p.D555fs
READ	TCGA-EI-6507-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503459	32503459	Frame_Shift_Del	G	-	p.R310fs
READ	TCGA-EI-6507-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503459	32503459	Frame_Shift_Del	G	-	p.R310fs
READ	TCGA-EI-6507-01	KIAA0319L	ENST00000325722.3,ENST00000482929.2,ENST00000426982.2,ENST00000478463.2,ENST00000440579.1,ENST00000469892.1	chr1	35944660:35944813:35972212:35972736:36019950:36020120,	35972213	35972736	35972480	35972480	Frame_Shift_Del	T	-	p.F134fs
READ	TCGA-EI-6882-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33235814	33235814	Frame_Shift_Del	C	-	p.S345fs
READ	TCGA-G5-6572-01	KIF25	ENST00000351261.3	chr6	168440744:168440896:168442648:168442831:168445506:168445743,	168442649	168442831	168442761	168442761	Frame_Shift_Del	C	-	p.N253fs
READ	TCGA-AG-3732-01	KLHDC2	ENST00000555739.1,ENST00000556559.1,ENST00000554589.1,ENST00000557247.1,ENST00000298307.5,ENST00000555443.1,ENST00000557063.1	chr14	50244895:50244977:50245128:50245212:50246312:50246393,	50245129	50245212	50245175	50245175	Frame_Shift_Del	A	-	p.D199fs
READ	TCGA-EI-6507-01	KLHL12	ENST00000367258.1,ENST00000435533.3,ENST00000367261.3	chr1	202878137:202878252:202880181:202880331:202887298:202887516,	202880182	202880331	202880212	202880212	Frame_Shift_Del	G	-	p.R230fs
READ	TCGA-EI-6507-01	KLHL4	ENST00000373114.4,ENST00000373119.4	chrX	86872934:86873131:86877210:86877423:86880609:86880796,	86877211	86877423	86877231	86877231	Frame_Shift_Del	A	-	p.I315fs
READ	TCGA-EI-6882-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173389	154173390	Frame_Shift_Ins	-	C	p.A223fs
READ	TCGA-EI-6882-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173389	154173390	Frame_Shift_Ins	-	C	p.A223fs
READ	TCGA-EI-6507-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
READ	TCGA-EI-6507-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
READ	TCGA-EI-6882-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000347328.5,ENST00000520064.2,ENST00000293618.8,ENST00000518444.1	chr12	50856379:50856413:50860741:50860903:50867197:50867319,	50860742	50860903	50860854	50860854	Frame_Shift_Del	T	-	p.V499fs
READ	TCGA-BM-6198-01	LNX1	ENST00000263925.7	chr4	54374152:54374394:54439789:54440255:54457554:54457682,	54439790	54440255	54440127	54440128	Frame_Shift_Del	CA	-	p.15_15del
READ	TCGA-EI-6882-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763924	74763924	Frame_Shift_Del	C	-	p.G275fs
READ	TCGA-DT-5265-01	LRFN5	ENST00000298119.4	chr14	42355808:42357213:42360452:42361165:42368119:42368163,	42360453	42361165	42361064	42361064	Frame_Shift_Del	A	-	p.Q666fs
READ	TCGA-EI-6882-01	LSM14A	ENST00000540746.2,ENST00000588582.2,ENST00000544216.3,ENST00000586157.1,ENST00000433627.5	chr19	34706500:34706566:34710295:34710478:34710610:34710782,	34710296	34710478	34710448	34710449	Frame_Shift_Del	AG	-	p.311_312del
READ	TCGA-DC-6682-01	LTK	ENST00000561619.1,ENST00000563518.1,ENST00000453182.2,ENST00000263800.6,ENST00000355166.5	chr15	41796705:41796838:41796970:41797072:41797169:41797262,	41796971	41797072	41797016	41797016	Frame_Shift_Del	G	-	p.P562fs
READ	TCGA-EI-6882-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827881	48827882	Frame_Shift_Ins	-	A	p.D386fs
READ	TCGA-EI-6882-01	MAK	ENST00000313243.2,ENST00000354489.2,ENST00000474039.1	chr6	10784656:10784805:10791907:10792080:10796230:10796542,	10791908	10792080	10791921	10791922	Frame_Shift_Ins	-	T	p.D435fs
READ	TCGA-DY-A1DD-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561666	210561667	Frame_Shift_Ins	-	A	p.A1471fs
READ	TCGA-EI-6507-01	MAST3	ENST00000262811.6	chr19	18245388:18245521:18245626:18245792:18246549:18246651,	18245627	18245792	18245760	18245760	Frame_Shift_Del	C	-	p.T584fs
READ	TCGA-BM-6198-01	MCM3AP	ENST00000397708.1,ENST00000291688.1	chr21	47690314:47690477:47692474:47692743:47693301:47693499,	47692475	47692743	47692610	47692610	Frame_Shift_Del	T	-	p.E777fs
READ	TCGA-EI-6507-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300932	18300932	Frame_Shift_Del	G	-	p.R1499fs
READ	TCGA-EI-6507-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41341161	41341161	Frame_Shift_Del	T	-	p.N54fs
READ	TCGA-EI-6882-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693884	47693884	Frame_Shift_Del	T	-	p.L533fs
READ	TCGA-EI-6882-01	MTDH	ENST00000336273.3,ENST00000522104.1,ENST00000519934.1	chr8	98718853:98718978:98725889:98725997:98735106:98735263,98718853:98718978:98725889:98725997:98731276:98731315,	98725890	98725997	98725950	98725950	Frame_Shift_Del	A	-	p.K444fs
READ	TCGA-EI-6507-01	MTUS1	ENST00000262102.6	chr8	17573275:17573410:17581180:17581342:17591711:17591756,17573275:17573410:17581180:17581342:17601112:17601308,	17581181	17581342	17581321	17581322	Frame_Shift_Ins	-	T	p.T770fs
READ	TCGA-EI-6882-01	MYB	ENST00000526565.1,ENST00000528774.1,ENST00000341911.5	chr6	135516885:135517055:135518098:135518461:135520045:135520188,135516885:135517140:135518098:135518461:135520045:135520188,	135518099	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
READ	TCGA-EI-6882-01	MYB	ENST00000533384.1	chr6	135516885:135517140:135517863:135518461:135520045:135520188,	135517864	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
READ	TCGA-EI-6882-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671669	77671669	Frame_Shift_Del	T	-	p.K3207fs
READ	TCGA-EI-6882-01	MYO6	ENST00000369977.3,ENST00000369985.4,ENST00000369981.3,ENST00000369975.1	chr6	76527239:76527381:76532498:76532568:76538256:76538330,	76532499	76532568	76532547	76532547	Frame_Shift_Del	A	-	p.S55fs
READ	TCGA-EI-6882-01	NDUFS4	ENST00000296684.5,ENST00000506974.1,ENST00000502423.1,ENST00000507026.1	chr5	52942062:52942235:52954380:52954454:52978947:52978968,	52954381	52954454	52954446	52954446	Frame_Shift_Del	A	-	p.E139fs
READ	TCGA-EI-6882-01	NOTCH4	ENST00000375023.3	chr6	32169188:32169277:32169852:32170376:32171546:32171659,	32169853	32170376	32170147	32170147	Frame_Shift_Del	C	-	p.G1154fs
READ	TCGA-EI-6882-01	NRXN2	ENST00000423049.1,ENST00000487484.1,ENST00000301894.2	chr11	64397957:64398045:64402742:64402924:64410010:64410072,	64402743	64402924	64402894	64402894	Frame_Shift_Del	C	-	p.G1145fs
READ	TCGA-EI-6882-01	OAT	ENST00000368845.5	chr10	126097461:126097534:126100541:126100769:126107441:126107505,	126100542	126100769	126100644	126100644	Frame_Shift_Del	T	-	p.T33fs
READ	TCGA-DC-6682-01	OXSM	ENST00000280701.3	chr3	25831584:25831638:25832480:25833488:25835582:25836014,	25832481	25833488	25833044	25833045	Frame_Shift_Ins	-	G	p.F178fs
READ	TCGA-EI-6882-01	PALMD	ENST00000496843.1,ENST00000263174.4	chr1	100152631:100152745:100154330:100155428:100159574:100160097,	100154331	100155428	100154358	100154358	Frame_Shift_Del	A	-	p.E181fs
READ	TCGA-EI-6883-01	PARN	ENST00000566021.1,ENST00000437198.2,ENST00000341484.7,ENST00000562896.1	chr16	14721032:14721044:14721125:14721193:14722028:14722108,	14721126	14721193	14721149	14721149	Frame_Shift_Del	A	-	p.K75fs
READ	TCGA-EI-6882-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000459659.1,ENST00000484478.1	chr3	33863526:33863574:33866678:33866832:33867971:33868031,	33866679	33866832	33866811	33866811	Frame_Shift_Del	T	-	p.V198fs
READ	TCGA-EI-6507-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091693	35091693	Frame_Shift_Del	G	-	p.R731fs
READ	TCGA-EI-6507-01	PIK3C2B	ENST00000367187.3,ENST00000424712.2	chr1	204418312:204418424:204418977:204419145:204423796:204423919,	204418978	204419145	204419065	204419065	Frame_Shift_Del	G	-	p.P716fs
READ	TCGA-EI-6507-01	PNPLA6	ENST00000600737.1,ENST00000595176.1,ENST00000450331.3,ENST00000595889.1,ENST00000414982.3,ENST00000221249.6	chr19	7607446:7607556:7607646:7607814:7607892:7607970,	7607647	7607814	7607647	7607648	Frame_Shift_Ins	-	C	p.T416fs
READ	TCGA-EI-6882-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944500	Frame_Shift_Del	G	-	p.T455fs
READ	TCGA-EI-6507-01	PPP6R2	ENST00000216061.5	chr22	50878389:50878478:50879229:50879455:50882294:50882546,	50879230	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.A818fs
READ	TCGA-EI-6507-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000359139.3,ENST00000401672.3,ENST00000427222.2	chr22	50878389:50878478:50879250:50879455:50882294:50882546,	50879251	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.A818fs
READ	TCGA-CL-4957-01	PRIMA1	ENST00000316227.3,ENST00000393140.1,ENST00000393143.1,ENST00000477603.1	chr14	94203586:94203716:94245521:94245657:94253971:94254095,	94245522	94245657	94245571	94245574	Frame_Shift_Del	CAGC	-	p.60_61del
READ	TCGA-DC-6682-01	PRIMA1	ENST00000316227.3,ENST00000393140.1,ENST00000393143.1,ENST00000477603.1	chr14	94203586:94203716:94245521:94245657:94253971:94254095,	94245522	94245657	94245571	94245574	Frame_Shift_Del	CAGC	-	p.60_61del
READ	TCGA-EI-6882-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39587143	39587144	Frame_Shift_Del	GA	-	p.727_727del
READ	TCGA-F5-6812-01	REEP3	ENST00000298249.4,ENST00000373758.4	chr10	65354537:65354614:65357783:65357904:65358929:65359043,	65357784	65357904	65357872	65357872	Frame_Shift_Del	T	-	p.K90fs
READ	TCGA-BM-6198-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492792	56492805	Frame_Shift_Del	TCTGATAATAGCTT	-	p.45_50del
READ	TCGA-EI-7004-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492812	56492812	Frame_Shift_Del	C	-	p.E43fs
READ	TCGA-EI-6510-01	ROCK2	ENST00000401753.1,ENST00000261535.3,ENST00000315872.6	chr2	11355485:11355538:11355635:11355771:11356283:11356332,	11355636	11355771	11355647	11355647	Frame_Shift_Del	A	-	p.L529fs
READ	TCGA-EI-6882-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
READ	TCGA-EI-6507-01	RRP8	ENST00000533907.1	chr11	6621898:6622005:6622155:6622832:6623081:6623445,	6622156	6622832	6622647	6622648	Frame_Shift_Ins	-	G	p.T217fs
READ	TCGA-EI-6507-01	RRP8	ENST00000254605.6	chr11	6622155:6622285:6622378:6622832:6623081:6623445,	6622379	6622832	6622647	6622648	Frame_Shift_Ins	-	G	p.T217fs
READ	TCGA-EI-6507-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547974	35547974	Frame_Shift_Del	C	-	p.S485fs
READ	TCGA-EI-6882-01	SFXN2	ENST00000459894.2,ENST00000480358.2,ENST00000369893.5	chr10	104493310:104493360:104495618:104495666:104497419:104498946,	104495619	104495666	104495651	104495651	Frame_Shift_Del	T	-	p.L285fs
READ	TCGA-DC-6154-01	SIK2	ENST00000304987.3	chr11	111486966:111487083:111491062:111491126:111558724:111558886,	111491063	111491126	111491069	111491070	Frame_Shift_Del	GA	-	p.86_87del
READ	TCGA-EI-6507-01	SLC2A8	ENST00000373371.3,ENST00000451404.1,ENST00000423934.1,ENST00000373360.3,ENST00000419917.1,ENST00000430147.1	chr9	130162242:130162285:130164835:130165032:130166016:130166070,130162242:130162285:130164835:130165032:130165938:130166026,	130164836	130165032	130165010	130165011	Frame_Shift_Ins	-	C	p.D234fs
READ	TCGA-EI-6882-01	SLC35D2	ENST00000253270.7	chr9	99086372:99086451:99098998:99099066:99106185:99106275,	99098999	99099066	99099002	99099002	Frame_Shift_Del	A	-	p.L250fs
READ	TCGA-AG-3591-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749231	33749231	Frame_Shift_Del	C	-	p.V273fs
READ	TCGA-DC-6682-01	SPATS2L	ENST00000453663.1,ENST00000409140.3,ENST00000449647.1,ENST00000439395.1,ENST00000423749.1,ENST00000358677.5,ENST00000438761.1,ENST00000409385.1,ENST00000409397.2,ENST00000457757.1,ENST00000421573.1,ENST00000409988.3,ENST00000360760.5,ENST00000451764.2,ENST00000409718.1,ENST00000409755.3,ENST00000409151.1,ENST00000439084.1	chr2	201277033:201277142:201281101:201281151:201283972:201284056,	201281102	201281151	201281141	201281142	Frame_Shift_Ins	-	A	p.G63fs
READ	TCGA-EI-6882-01	SPATS2L	ENST00000453663.1,ENST00000449647.1,ENST00000438761.1,ENST00000409397.2,ENST00000360760.5	chr2	201281101:201281151:201283972:201284219:201305371:201305447,	201283973	201284219	201284085	201284085	Frame_Shift_Del	A	-	p.Q104fs
READ	TCGA-EI-6882-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736371	Frame_Shift_Del	C	-	p.Q1875fs
READ	TCGA-EI-6882-01	STAB1	ENST00000321725.6	chr3	52549438:52549522:52550058:52550254:52550371:52550467,	52550059	52550254	52550119	52550119	Frame_Shift_Del	G	-	p.L1336fs
READ	TCGA-EI-6882-01	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67936209:67936273:67937053:67938471:67939066:67939240,	67937054	67938471	67937943	67937944	Frame_Shift_Del	GG	-	p.396_396del
READ	TCGA-EI-6507-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1437fs
READ	TCGA-DC-4745-01	SYT4	ENST00000590752.1	chr18	40851696:40851797:40853544:40854305:40857212:40857455,	40853545	40854305	40854079	40854079	Frame_Shift_Del	A	-	p.P106fs
READ	TCGA-AG-3731-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43898659:43898861:43900056:43900156:43900870:43901000,	43900057	43900156	43900128	43900128	Frame_Shift_Del	T	-	p.V1902fs
READ	TCGA-EI-6507-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
READ	TCGA-EI-6882-01	TCP11	ENST00000445851.2,ENST00000311875.5,ENST00000394696.4	chr6	35096891:35096959:35108523:35108661:35108981:35109030,35107796:35108002:35108523:35108661:35108981:35109030,35103903:35103995:35108523:35108661:35108981:35109030,	35108524	35108661	35108559	35108560	Frame_Shift_Ins	-	G	p.Q43fs
READ	TCGA-EI-6511-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155778	106155779	Frame_Shift_Ins	-	A	p.E227fs
READ	TCGA-AH-6644-01	TFPT	ENST00000420715.2	chr19	54613433:54613504:54617821:54618080:54618626:54618665,54611632:54611702:54617821:54618080:54618626:54618665,	54617822	54618080	54618051	54618051	Frame_Shift_Del	A	-	p.F18fs
READ	TCGA-G5-6572-01	TGIF1	ENST00000343820.5,ENST00000407501.2,ENST00000546979.1	chr18	3450322:3450503:3456351:3456578:3457362:3457454,	3456352	3456578	3456461	3456462	Frame_Shift_Ins	-	C	p.L42fs
READ	TCGA-EI-6884-01	THUMPD2	ENST00000378727.4,ENST00000260619.6,ENST00000505747.1	chr2	39996040:39996233:39996849:39997259:39998644:39998780,39995563:39995641:39996849:39997259:39998644:39998780,	39996850	39997259	39997113	39997114	Frame_Shift_Ins	-	T	p.V137fs
READ	TCGA-EI-6884-01	THUMPD2	ENST00000530522.1	chr2	39995563:39995641:39996897:39997259:39998654:39998780,	39996898	39997259	39997113	39997114	Frame_Shift_Ins	-	T	p.V137fs
READ	TCGA-EI-6507-01	TM7SF3	ENST00000543803.1	chr12	27148293:27148341:27149674:27149795:27152458:27152581,27148293:27148341:27149674:27149795:27167010:27167144,	27149675	27149795	27149701	27149701	Frame_Shift_Del	A	-	p.A165fs
READ	TCGA-EI-6506-01	TMEM106C	ENST00000547682.1,ENST00000550552.1,ENST00000256686.6,ENST00000449758.2,ENST00000550146.1,ENST00000548640.1	chr12	48359871:48360012:48360465:48360515:48360990:48361044,48359871:48359955:48360465:48360515:48360990:48361044,	48360466	48360515	48360513	48360513	Frame_Shift_Del	G	-	p.V181fs
READ	TCGA-EI-6917-01	TNMD	ENST00000373031.4	chrX	99852500:99852654:99854012:99854179:99854504:99854882,	99854013	99854179	99854069	99854070	Frame_Shift_Ins	-	A	p.E212fs
READ	TCGA-G5-6233-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579316	7579317	Frame_Shift_Ins	-	AA	p.C124fs
READ	TCGA-AF-6136-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579406	7579407	Frame_Shift_Ins	-	AC	p.S94fs
READ	TCGA-EI-6885-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579530	7579531	Frame_Shift_Ins	-	T	p.W53fs
READ	TCGA-EI-6507-01	TPO	ENST00000497517.2	chr2	1500366:1500537:1507719:1507851:1520654:1520751,1497573:1497811:1507719:1507851:1520654:1520751,	1507720	1507851	1507747	1507748	Frame_Shift_Ins	-	C	p.H805fs
READ	TCGA-AG-4022-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230723891	230723891	Frame_Shift_Del	A	-	p.G167fs
READ	TCGA-DT-5265-01	TROAP	ENST00000547807.1	chr12	49719858:49719941:49720450:49720503:49721009:49721110,	49720451	49720503	49720484	49720485	Frame_Shift_Ins	-	GA	p.L250fs
READ	TCGA-EI-6507-01	TYW3	ENST00000479111.1,ENST00000457880.2,ENST00000370867.3	chr1	75214434:75214506:75217975:75218109:75229577:75229673,	75217976	75218109	75218076	75218076	Frame_Shift_Del	A	-	p.Q176fs
READ	TCGA-EI-6507-01	UPK1B	ENST00000497685.1,ENST00000460625.1,ENST00000264234.3	chr3	118913065:118913245:118917903:118917987:118922763:118922959,	118917904	118917987	118917947	118917947	Frame_Shift_Del	G	-	p.W231fs
READ	TCGA-AH-6644-01	USH1C	ENST00000318024.4,ENST00000526181.1,ENST00000526313.1,ENST00000527720.1,ENST00000005226.7,ENST00000527020.1	chr11	17552700:17552839:17552945:17553089:17554801:17554869,	17552946	17553089	17552956	17552957	Frame_Shift_Del	GG	-	p.80_80del
READ	TCGA-AH-6544-01	USP31	ENST00000219689.7	chr16	23113639:23113784:23116761:23116897:23117533:23117626,	23116762	23116897	23116834	23116834	Frame_Shift_Del	G	-	p.V340fs
READ	TCGA-EI-6512-01	XRN1	ENST00000264951.4,ENST00000392981.2,ENST00000463916.1	chr3	142144270:142144380:142145585:142145683:142151502:142151735,	142145586	142145683	142145627	142145628	Frame_Shift_Del	AG	-	p.122_122del
READ	TCGA-EI-6882-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055104	66055105	Frame_Shift_Ins	-	G	p.R131fs
READ	TCGA-EI-6882-01	ZMYM5	ENST00000382905.4,ENST00000337963.4,ENST00000502168.2,ENST00000467542.1	chr13	20411795:20411961:20412839:20413125:20425494:20425588,	20412840	20413125	20412884	20412887	Frame_Shift_Del	GAAG	-	p.276_277del
READ	TCGA-EI-6882-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478762	90478763	Frame_Shift_Ins	-	A	p.E298fs
READ	TCGA-AG-A00Y-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278110	114278111	Frame_Shift_Del	CC	-	p.2779_2779del
READ	TCGA-AG-3599-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000367284.5	chr1	201982309:201982426:201982956:201983152:201984336:201984922,	201982957	201983152	201983015	201983016	Frame_Shift_Ins	-	AACG	p.L288fs
READ	TCGA-AG-3600-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763923	74763924	Frame_Shift_Ins	-	C	p.G275fs
READ	TCGA-AG-3600-01	MDN1	ENST00000428876.1,ENST00000369393.3	chr6	90420399:90420513:90421754:90421975:90422293:90422505,	90421755	90421975	90421780	90421786	Frame_Shift_Del	TAAATGA	-	p.2540_2542del
READ	TCGA-AG-A00Y-01	MEPCE	ENST00000310512.2,ENST00000414441.1	chr7	100028237:100029312:100030541:100030760:100030885:100031012,	100030542	100030760	100030612	100030613	Frame_Shift_Ins	-	G	p.L581fs
READ	TCGA-AG-A00Y-01	PCCB	ENST00000251654.4,ENST00000490504.1,ENST00000466072.1,ENST00000468777.1,ENST00000462637.1,ENST00000469217.1,ENST00000483687.1,ENST00000482086.1,ENST00000471595.1	chr3	136045644:136045752:136045996:136046097:136046475:136046573,	136045997	136046097	136046079	136046080	Frame_Shift_Ins	-	T	p.V427fs
READ	TCGA-AG-A00Y-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32097384:32097486:32098469:32098740:32101210:32101345,	32098470	32098740	32098677	32098678	Frame_Shift_Ins	-	A	p.P2719fs
READ	TCGA-AG-A00Y-01	RBM4B	ENST00000310046.4	chr11	66433018:66433049:66436085:66436762:66444138:66444562,	66436086	66436762	66436369	66436370	Frame_Shift_Ins	-	A	p.D269fs
READ	TCGA-AG-A00Y-01	SLC43A2	ENST00000572135.1,ENST00000574743.1,ENST00000571650.1,ENST00000382147.4,ENST00000301335.5	chr17	1518272:1518328:1519855:1520063:1531008:1531093,	1519856	1520063	1519953	1519954	Frame_Shift_Ins	-	AG	p.A91fs
READ	TCGA-AG-A00Y-01	SYTL3	ENST00000297239.9,ENST00000360448.3	chr6	159083781:159083844:159084236:159084410:159086426:159086645,	159084237	159084410	159084381	159084382	Frame_Shift_Del	GG	-	p.27_28del
READ	TCGA-AF-2692-01	TCF7L2	ENST00000543371.1,ENST00000545257.1,ENST00000538897.1,ENST00000536810.1,ENST00000349937.2,ENST00000355995.4,ENST00000369397.4,ENST00000534894.1,ENST00000352065.5	chr10	114799783:114799885:114900942:114901075:114903681:114903772,	114900943	114901075	114901049	114901050	Frame_Shift_Ins	-	A	p.L197fs
READ	TCGA-AG-A00Y-01	TROAP	ENST00000257909.3	chr12	49723645:49723774:49723927:49724726:49724996:49725190,	49723928	49724726	49724135	49724136	Frame_Shift_Ins	-	CA	p.P503fs
READ	TCGA-AG-A00Y-01	TROAP	ENST00000547923.1	chr12	49723639:49723774:49723927:49724356:49724443:49724726,	49723928	49724356	49724135	49724136	Frame_Shift_Ins	-	CA	p.P503fs
READ	TCGA-AG-A00Y-01	UNC13D	ENST00000412096.2,ENST00000207549.4	chr17	73824910:73825064:73826108:73826232:73826442:73826518,	73826109	73826232	73826131	73826132	Frame_Shift_Ins	-	C	p.L978fs
SARC	TCGA-KD-A5QU-01	IFI44L	ENST00000476521.1	chr1	79101021:79101174:79102784:79102888:79106705:79106806,	79102785	79102888	79102851	79102851	Frame_Shift_Del	A	-	p.A337fs
SARC	TCGA-KD-A5QU-01	IFI44L	ENST00000486882.1,ENST00000342282.3,ENST00000370751.5,ENST00000476876.1	chr1	79101021:79101174:79102716:79102888:79106705:79106806,	79102717	79102888	79102851	79102851	Frame_Shift_Del	A	-	p.A337fs
SARC	TCGA-DX-AB2P-01	TLL2	ENST00000469598.1	chr10	98205847:98205925:98240105:98240216:98273267:98273668,	98240106	98240216	98240208	98240208	Frame_Shift_Del	A	-	p.W62fs
SARC	TCGA-WP-A9GB-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800543	39800544	Frame_Shift_Del	AG	-	p.ID2761fs
SARC	TCGA-WP-A9GB-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155447818	155447818	Frame_Shift_Del	T	-	p.R1615fs
SARC	TCGA-WP-A9GB-01	DALRD3	ENST00000313778.5,ENST00000484831.1,ENST00000341949.4,ENST00000420952.2,ENST00000441576.2,ENST00000395462.4,ENST00000440857.1,ENST00000460505.1	chr3	49054866:49054946:49055045:49055302:49055455:49055466,	49055046	49055302	49055208	49055209	Frame_Shift_Del	CT	-	p.RA18fs
SARC	TCGA-WP-A9GB-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938289	76938290	Frame_Shift_Del	TC	-	p.E820fs
SARC	TCGA-DX-AB2V-01	MASP1	ENST00000392470.2,ENST00000296280.6,ENST00000392472.2,ENST00000169293.6,ENST00000337774.5	chr3	186970955:186971103:186974451:186974648:186978528:186978660,	186974452	186974648	186974575	186974575	Frame_Shift_Del	G	-	p.P207fs
SARC	TCGA-DX-A8BV-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937766	76937769	Frame_Shift_Del	TTTC	-	p.KK993fs
SARC	TCGA-DX-A6B7-01	ARFGEF1	ENST00000520381.1,ENST00000262215.3	chr8	68170319:68170525:68172049:68172161:68178240:68178442,	68172050	68172161	68172143	68172144	Frame_Shift_Ins	-	TT	p.K714fs
SARC	TCGA-DX-A7EQ-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123964551	123964551	Frame_Shift_Del	C	-	p.Y267fs
SARC	TCGA-IW-A3M4-01	SEC23A	ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39514366:39514528:39517855:39517933:39524346:39524500,	39517856	39517933	39517881	39517882	Frame_Shift_Ins	-	A	p.R369fs
SARC	TCGA-QQ-A5VB-01	FBXO5	ENST00000367241.3,ENST00000229758.3	chr6	153291663:153292549:153293406:153293589:153294180:153294271,	153293407	153293589	153293556	153293556	Frame_Shift_Del	T	-	p.T269fs
SARC	TCGA-QQ-A5VB-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577114	7577114	Frame_Shift_Del	C	-	p.C275fs
SARC	TCGA-FX-A48G-01	ACTA2	ENST00000458208.1,ENST00000224784.6	chr10	90699263:90699455:90700985:90701147:90701541:90701626,	90700986	90701147	90701022	90701025	Frame_Shift_Del	TCTT	-	p.KI193fs
SARC	TCGA-MJ-A850-01	PRIMA1	ENST00000316227.3,ENST00000393140.1,ENST00000393143.1,ENST00000477603.1	chr14	94203586:94203716:94245521:94245657:94253971:94254095,	94245522	94245657	94245571	94245574	Frame_Shift_Del	CAGC	-	p.PL59fs
SARC	TCGA-DX-A3U9-01	HERC1	ENST00000443617.2	chr15	63956668:63956793:63958117:63958349:63958554:63958671,	63958118	63958349	63958195	63958199	Frame_Shift_Del	ATTTG	-	p.SN2825fs
SARC	TCGA-DX-AB2T-01	BTBD10	ENST00000528120.1,ENST00000527102.2,ENST00000530907.1,ENST00000278174.5	chr11	13410248:13410688:13424714:13424825:13427205:13427403,	13424715	13424825	13424802	13424803	Frame_Shift_Del	TA	-	p.YR343fs
SARC	TCGA-X6-A7WC-01	MOV10	ENST00000369645.1	chr1	113217341:113217351:113217469:113217671:113231556:113231760,	113217470	113217671	113217542	113217542	Frame_Shift_Del	G	-	p.S3fs
SARC	TCGA-X6-A7WC-01	MOV10	ENST00000468624.1,ENST00000413052.2	chr1	113217341:113217351:113217453:113217671:113231556:113231760,	113217454	113217671	113217542	113217542	Frame_Shift_Del	G	-	p.S3fs
SARC	TCGA-UE-A6QU-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55254362	55254363	Frame_Shift_Del	CT	-	p.E291fs
SARC	TCGA-K1-A6RT-01	PSMD4	ENST00000445776.1	chr1	151237363:151237394:151237641:151237710:151237869:151238064,151237363:151237394:151237641:151237710:151238479:151238574,	151237642	151237710	151237657	151237657	Frame_Shift_Del	A	-	p.K129fs
SARC	TCGA-K1-A6RT-01	PCBP4	ENST00000471622.1,ENST00000498822.1,ENST00000355852.2,ENST00000395014.2,ENST00000461554.1,ENST00000497390.1,ENST00000492809.1,ENST00000322099.7	chr3	51993382:51993427:51993592:51993667:51993910:51994039,	51993593	51993667	51993653	51993654	Frame_Shift_Ins	-	C	p.G177fs
SARC	TCGA-K1-A6RT-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000567322.1,ENST00000287463.4	chr16	30665550:30665660:30665949:30666535:30666671:30666741,	30665950	30666535	30666121	30666121	Frame_Shift_Del	C	-	p.S277fs
SARC	TCGA-SI-A71P-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541587	29541588	Frame_Shift_Ins	-	A	p.Q504fs
SARC	TCGA-IS-A3KA-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000449094.1,ENST00000456774.1,ENST00000358536.4	chr3	48462256:48462365:48462636:48462793:48463082:48463209,	48462637	48462793	48462755	48462756	Frame_Shift_Ins	-	GGCCACA	p.R564fs
SARC	TCGA-IS-A3KA-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951157	48951157	Frame_Shift_Del	A	-	p.E440fs
SARC	TCGA-HS-A5N9-01	NBAS	ENST00000429842.1,ENST00000281513.5	chr2	15542291:15542425:15555669:15555843:15557650:15557705,	15555670	15555843	15555741	15555741	Frame_Shift_Del	C	-	p.E956fs
SARC	TCGA-HS-A5N9-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939250	76939250	Frame_Shift_Del	C	-	p.E501fs
SARC	TCGA-DX-AB2W-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13165994:13166110:13167417:13167567:13167945:13168039,	13167418	13167567	13167497	13167509	Frame_Shift_Del	AAGTTAGAGCTAC	-	p.KLELQ360fs
SARC	TCGA-MB-A5YA-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578222	7578223	Frame_Shift_Del	TC	-	p.R209fs
SARC	TCGA-QC-A7B5-01	HELQ	ENST00000508591.1,ENST00000295488.3,ENST00000510985.1	chr4	84337883:84338018:84339245:84339359:84342715:84342825,	84339246	84339359	84339341	84339341	Frame_Shift_Del	C	-	p.V990fs
SARC	TCGA-QC-A7B5-01	CCT5	ENST00000515676.1,ENST00000506600.1,ENST00000280326.4,ENST00000515390.1,ENST00000503026.1	chr5	10261671:10261857:10262592:10262730:10263245:10263371,	10262593	10262730	10262666	10262666	Frame_Shift_Del	T	-	p.V419fs
SARC	TCGA-DX-A23Y-01	SNUPN	ENST00000371091.5,ENST00000564644.1	chr15	75913386:75913397:75917055:75917276:75917676:75917979,	75917056	75917276	75917121	75917121	Frame_Shift_Del	T	-	p.N22fs
SARC	TCGA-DX-AB2G-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831289	61831290	Frame_Shift_Ins	-	T	p.H3117fs
SARC	TCGA-DX-AB2G-01	LRP1	ENST00000243077.3	chr12	57587681:57587795:57588136:57588286:57588359:57588482,	57588137	57588286	57588165	57588165	Frame_Shift_Del	C	-	p.R2649fs
SARC	TCGA-3B-A9HI-01	TGS1	ENST00000260129.5,ENST00000523948.1	chr8	56698277:56698450:56698796:56699619:56702740:56702858,	56698797	56699619	56698987	56698988	Frame_Shift_Del	CT	-	p.T177fs
SARC	TCGA-3B-A9HI-01	NOL6	ENST00000297990.4,ENST00000379471.2,ENST00000353159.2	chr9	33469496:33469665:33470009:33470189:33472001:33472118,	33470010	33470189	33470084	33470087	Frame_Shift_Del	CAGT	-	p.TV161fs
SARC	TCGA-3B-A9HI-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938266	76938266	Frame_Shift_Del	T	-	p.M828fs
SARC	TCGA-DX-A3LY-01	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000524495.1,ENST00000530582.1,ENST00000532112.1,ENST00000533792.1	chr11	7669617:7669768:7670030:7670142:7670377:7670403,	7670031	7670142	7670079	7670079	Frame_Shift_Del	G	-	p.V616fs
SARC	TCGA-DX-A3LY-01	MARS	ENST00000537638.2,ENST00000552914.1,ENST00000548202.1,ENST00000315473.5,ENST00000262027.5,ENST00000545888.2	chr12	57906712:57906747:57908502:57908634:57908736:57908797,	57908503	57908634	57908507	57908507	Frame_Shift_Del	G	-	p.G658fs
SARC	TCGA-DX-A3LY-01	METTL1	ENST00000553125.1	chr12	58163362:58163461:58164876:58165040:58165756:58165859,58163554:58163739:58164876:58165040:58165262:58165388,	58164877	58165040	58164954	58164954	Frame_Shift_Del	G	-	p.P66fs
SARC	TCGA-DX-A240-01	ARL13B	ENST00000486562.1	chr3	93699131:93699326:93714721:93714788:93754174:93754280,	93714722	93714788	93714729	93714729	Frame_Shift_Del	T	-	p.L25fs
SARC	TCGA-DX-A240-01	ARL13B	ENST00000471138.1,ENST00000394222.3	chr3	93699131:93699326:93714717:93714788:93754174:93754280,93699131:93699326:93714717:93714788:93722502:93722746,	93714718	93714788	93714729	93714729	Frame_Shift_Del	T	-	p.L25fs
SARC	TCGA-QQ-A8VG-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64867822	64867823	Frame_Shift_Ins	-	A	p.S227fs
SARC	TCGA-QQ-A8VG-01	PIN1	ENST00000587625.1,ENST00000247970.4,ENST00000588695.1	chr19	9946044:9946078:9949111:9949324:9958705:9958816,	9949112	9949324	9949267	9949267	Frame_Shift_Del	T	-	p.S72fs
SARC	TCGA-X6-A8C3-01	SLC52A2	ENST00000526779.1	chr8	145582847:145583083:145583282:145583407:145583831:145584153,	145583283	145583407	145583332	145583332	Frame_Shift_Del	G	-	p.L60fs
SARC	TCGA-X6-A8C3-01	SLC52A2	ENST00000532887.1,ENST00000402965.1,ENST00000527078.1,ENST00000530047.1,ENST00000329994.2	chr8	145582847:145583083:145583282:145584153:145584249:145584343,	145583283	145584153	145583332	145583332	Frame_Shift_Del	G	-	p.L60fs
SARC	TCGA-X6-A8C3-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119491270:119491375:119495677:119495802:119567910:119568099,	119495678	119495802	119495717	119495717	Frame_Shift_Del	C	-	p.V828fs
SARC	TCGA-DX-A7EN-01	TSKS	ENST00000246801.3,ENST00000358830.3	chr19	50243013:50243189:50243315:50243440:50245141:50245277,	50243316	50243440	50243381	50243381	Frame_Shift_Del	A	-	p.L519fs
SARC	TCGA-LI-A67I-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578213	Frame_Shift_Del	A	-	p.F212fs
SARC	TCGA-WK-A8XT-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087892	32087892	Frame_Shift_Del	G	-	p.T1446fs
SARC	TCGA-WK-A8XT-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465991	59465992	Frame_Shift_Ins	-	A	p.E891fs
SARC	TCGA-DX-A7ET-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579328	7579329	Frame_Shift_Ins	-	TAAG	p.V120fs
SARC	TCGA-DX-A8BU-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000520467.1	chr11	9096027:9096162:9100930:9101056:9111253:9111370,	9100931	9101056	9101004	9101007	Frame_Shift_Del	CAAA	-	p.CL102fs
SARC	TCGA-DX-A8BU-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937049	76937053	Frame_Shift_Del	TAAAT	-	p.NL1232fs
SARC	TCGA-3B-A9HT-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42626552:42626651:42627630:42627730:42629011:42629126,	42627631	42627730	42627651	42627652	Frame_Shift_Ins	-	A	p.L82fs
SARC	TCGA-3B-A9HT-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492902	68492902	Frame_Shift_Del	A	-	p.K114fs
SARC	TCGA-3B-A9HT-01	SCAMP1	ENST00000509998.1,ENST00000339292.4	chr5	77656451:77656552:77684660:77684738:77711343:77711442,	77684661	77684738	77684680	77684680	Frame_Shift_Del	T	-	p.V26fs
SARC	TCGA-3B-A9HT-01	RAD50	ENST00000265335.6,ENST00000423956.1,ENST00000378823.3,ENST00000533482.1	chr5	131944306:131944417:131944808:131944901:131944974:131945031,	131944809	131944901	131944833	131944833	Frame_Shift_Del	A	-	p.K813fs
SARC	TCGA-3B-A9HT-01	FAS	ENST00000352159.4,ENST00000477270.1,ENST00000487314.1,ENST00000357339.2,ENST00000313771.5,ENST00000355740.2,ENST00000355279.2,ENST00000371857.3	chr10	90767456:90767594:90768645:90768754:90770295:90770357,	90768646	90768754	90768708	90768708	Frame_Shift_Del	T	-	p.F134fs
SARC	TCGA-3B-A9HT-01	ENO4	ENST00000341276.5	chr10	118616002:118616193:118618500:118618649:118620304:118620474,	118618501	118618649	118618628	118618628	Frame_Shift_Del	A	-	p.K208fs
SARC	TCGA-3B-A9HT-01	TMEM41B	ENST00000524543.1,ENST00000299596.4,ENST00000533867.1,ENST00000528080.1	chr11	9305093:9305140:9308001:9308140:9309248:9309353,	9308002	9308140	9308018	9308018	Frame_Shift_Del	A	-	p.F230fs
SARC	TCGA-3B-A9HT-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2,ENST00000604860.1	chr15	25599674:25599830:25601038:25601203:25601837:25601977,	25601039	25601203	25601107	25601108	Frame_Shift_Ins	-	A	p.L*685fs
SARC	TCGA-3B-A9HT-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958035	76958036	Frame_Shift_Ins	-	T	p.K622fs
SARC	TCGA-3B-A9HT-01	ANKS3	ENST00000587005.1,ENST00000590193.1,ENST00000592698.1,ENST00000592190.1	chr16	4776659:4776781:4779980:4780152:4784156:4784193,4774825:4774832:4779980:4780152:4784156:4784193,4764156:4764187:4779980:4780152:4784156:4784193,4776979:4777178:4779980:4780152:4784156:4784193,	4779981	4780152	4780042	4780042	Frame_Shift_Del	G	-	p.L37fs
SARC	TCGA-3B-A9HT-01	EDA2R	ENST00000451436.2	chrX	65817619:65817935:65819315:65819702:65822474:65822639,65817619:65817935:65819315:65819702:65822565:65822639,	65819316	65819702	65819393	65819393	Frame_Shift_Del	C	-	p.G276fs
SARC	TCGA-QQ-A8VB-01	PRSS3	ENST00000457896.1,ENST00000342836.4	chr9	33750687:33750725:33794743:33794871:33796640:33796800,	33794744	33794871	33794798	33794799	Frame_Shift_Del	GA	-	p.MR3fs
SARC	TCGA-QQ-A8VF-01	AGRN	ENST00000379370.2	chr1	978917:979112:979202:979403:979488:979637,	979203	979403	979279	979279	Frame_Shift_Del	C	-	p.H625fs
SARC	TCGA-QQ-A8VF-01	UBE2J2	ENST00000473215.1,ENST00000400929.2,ENST00000466752.1,ENST00000435198.1,ENST00000360466.2,ENST00000450390.2,ENST00000349431.6,ENST00000339385.6,ENST00000348298.7,ENST00000400930.4,ENST00000471154.1,ENST00000347370.2	chr1	1192501:1192510:1192587:1192690:1198725:1198766,	1192588	1192690	1192661	1192662	Frame_Shift_Ins	-	A	p.Q16fs
SARC	TCGA-QQ-A8VF-01	TMEM50A	ENST00000374358.4,ENST00000498135.1,ENST00000491936.1	chr1	25678116:25678184:25683283:25683344:25687150:25687458,25679372:25679465:25683283:25683344:25687150:25687458,	25683284	25683344	25683337	25683337	Frame_Shift_Del	T	-	p.F142fs
SARC	TCGA-QQ-A8VF-01	TP53BP2	ENST00000473135.1,ENST00000343537.7	chr1	223998165:223998215:224001941:224002055:224008921:224009069,	224001942	224002055	224001956	224001956	Frame_Shift_Del	G	-	p.P92fs
SARC	TCGA-QQ-A8VF-01	TSGA10	ENST00000489546.1	chr2	99636742:99636945:99651692:99651902:99681401:99681587,99634998:99635103:99651692:99651902:99681401:99681587,	99651693	99651902	99651839	99651839	Frame_Shift_Del	T	-	p.M490fs
SARC	TCGA-QQ-A8VF-01	EPC2	ENST00000258484.6,ENST00000457184.1	chr2	149402608:149402739:149447782:149447942:149501190:149501336,	149447783	149447942	149447829	149447829	Frame_Shift_Del	A	-	p.E67fs
SARC	TCGA-QQ-A8VF-01	SEC31A	ENST00000443462.2,ENST00000513858.1,ENST00000432794.1,ENST00000348405.4,ENST00000311785.7,ENST00000500777.2,ENST00000509142.1,ENST00000326950.5,ENST00000503937.1,ENST00000505984.1,ENST00000505472.1,ENST00000448323.1,ENST00000508502.1,ENST00000355196.2,ENST00000264405.5,ENST00000395310.2	chr4	83742189:83742261:83745707:83745827:83748521:83748765,	83745708	83745827	83745800	83745800	Frame_Shift_Del	T	-	p.I1120fs
SARC	TCGA-QQ-A8VF-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
SARC	TCGA-QQ-A8VF-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701580	89701581	Frame_Shift_Ins	-	T	p.N*63fs
SARC	TCGA-QQ-A8VF-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701580	89701581	Frame_Shift_Ins	-	T	p.N*63fs
SARC	TCGA-QQ-A8VF-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610619	30610619	Frame_Shift_Del	C	-	p.P268fs
SARC	TCGA-QQ-A8VF-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673902	151673902	Frame_Shift_Del	A	-	p.E1459fs
SARC	TCGA-QQ-A8VF-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899920	Frame_Shift_Del	A	-	p.K134fs
SARC	TCGA-QQ-A8VF-01	SLC2A8	ENST00000373371.3,ENST00000451404.1,ENST00000423934.1,ENST00000373360.3,ENST00000419917.1,ENST00000430147.1	chr9	130162242:130162285:130164835:130165032:130166016:130166070,130162242:130162285:130164835:130165032:130165938:130166026,	130164836	130165032	130165010	130165011	Frame_Shift_Ins	-	C	p.A234fs
SARC	TCGA-QQ-A8VF-01	SLC27A4	ENST00000300456.4	chr9	131112590:131112660:131112762:131112854:131114916:131115026,	131112763	131112854	131112835	131112835	Frame_Shift_Del	C	-	p.L286fs
SARC	TCGA-QQ-A8VF-01	MINPP1	ENST00000371996.4,ENST00000536010.1	chr10	89268092:89268290:89272880:89272978:89280792:89280926,	89272881	89272978	89272898	89272898	Frame_Shift_Del	T	-	p.F286fs
SARC	TCGA-QQ-A8VF-01	MORN4	ENST00000307450.6,ENST00000335628.3	chr10	99374311:99376168:99376434:99376544:99376964:99377079,	99376435	99376544	99376455	99376455	Frame_Shift_Del	T	-	p.N149fs
SARC	TCGA-QQ-A8VF-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
SARC	TCGA-QQ-A8VF-01	APEX1	ENST00000557592.1,ENST00000554325.1,ENST00000557150.1	chr14	20923736:20923862:20924072:20924260:20924826:20924842,20923896:20923932:20924072:20924260:20924826:20924842,	20924073	20924260	20924117	20924118	Frame_Shift_Del	AA	-	p.K35fs
SARC	TCGA-QQ-A8VF-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693722	Frame_Shift_Del	T	-	p.S690fs
SARC	TCGA-QQ-A8VF-01	ABCC6	ENST00000205557.7,ENST00000456970.2	chr16	16259479:16259790:16263502:16263710:16267140:16267261,	16263503	16263710	16263662	16263662	Frame_Shift_Del	G	-	p.L946fs
SARC	TCGA-QQ-A8VF-01	KNOP1	ENST00000219837.7,ENST00000565844.1	chr16	19721830:19721908:19722693:19722762:19725439:19725899,	19722694	19722762	19722724	19722724	Frame_Shift_Del	T	-	p.K319fs
SARC	TCGA-QQ-A8VF-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579321	7579322	Frame_Shift_Del	CA	-	p.V122fs
SARC	TCGA-QQ-A8VF-01	KHSRP	ENST00000599395.1,ENST00000595112.1,ENST00000595548.1,ENST00000398148.3	chr19	6418493:6418592:6418712:6418887:6419213:6419271,	6418713	6418887	6418761	6418762	Frame_Shift_Ins	-	T	p.S244fs
SARC	TCGA-QQ-A8VF-01	ZNF541	ENST00000391901.3,ENST00000314121.4,ENST00000448976.1,ENST00000263351.5,ENST00000595558.1	chr19	48024480:48024634:48024735:48024911:48025110:48025251,	48024736	48024911	48024744	48024745	Frame_Shift_Del	CT	-	p.E1312fs
SARC	TCGA-QQ-A8VF-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158042	Frame_Shift_Del	C	-	p.T1178fs
SARC	TCGA-QQ-A8VF-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640808	17640808	Frame_Shift_Del	G	-	p.P115fs
SARC	TCGA-QQ-A8VF-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33329264	33329265	Frame_Shift_Del	AC	-	p.V1599fs
SARC	TCGA-QQ-A8VF-01	CEP250	ENST00000397527.1	chr20	34067800:34067970:34078462:34078630:34079037:34079172,	34078463	34078630	34078524	34078524	Frame_Shift_Del	A	-	p.E883fs
SARC	TCGA-QQ-A8VF-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452518	58452519	Frame_Shift_Ins	-	T	p.I1024fs
SARC	TCGA-QQ-A8VF-01	CELSR1	ENST00000262738.3	chr22	46790038:46790159:46792501:46792643:46793570:46793682,	46792502	46792643	46792621	46792622	Frame_Shift_Del	CA	-	p.V1908fs
SARC	TCGA-DX-A6BA-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158026	27158026	Frame_Shift_Del	A	-	p.K85fs
SARC	TCGA-DX-A6BA-01	PI4KA	ENST00000477245.1,ENST00000572273.1,ENST00000399213.2,ENST00000414196.3,ENST00000255882.6	chr22	21063583:21063667:21064195:21064285:21064986:21065146,	21064196	21064285	21064210	21064213	Frame_Shift_Del	TGTC	-	p.QT2052fs
SARC	TCGA-DX-A8BZ-01	GIN1	ENST00000512248.1,ENST00000399004.2	chr5	102423829:102423876:102432244:102432530:102433017:102433194,	102432245	102432530	102432377	102432377	Frame_Shift_Del	C	-	p.V388fs
SARC	TCGA-HB-A3L4-01	SRF	ENST00000265354.4,ENST00000457278.2	chr6	43141584:43141851:43143443:43143705:43144285:43144405,	43143444	43143705	43143452	43143453	Frame_Shift_Del	GA	-	p.LK263fs
SARC	TCGA-DX-AATS-01	CCNB2	ENST00000559622.1,ENST00000288207.2	chr15	59406642:59406813:59406916:59407075:59408888:59409125,	59406917	59407075	59407067	59407067	Frame_Shift_Del	T	-	p.F197fs
SARC	TCGA-DX-AATS-01	SREBF1	ENST00000395751.4,ENST00000395756.1,ENST00000395757.1,ENST00000261646.5,ENST00000355815.4	chr17	17716025:17716165:17716681:17716793:17716882:17717036,	17716682	17716793	17716695	17716695	Frame_Shift_Del	G	-	p.P1097fs
SARC	TCGA-DX-AATS-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939398	76939419	Frame_Shift_Del	ACAAGGTTTTTCTCCTTTTCGT	-	p.ARKGEKPC443fs
SARC	TCGA-VT-A80J-02	KIF21B	ENST00000461742.2,ENST00000332129.2,ENST00000422435.2,ENST00000360529.5	chr1	200973467:200973583:200973893:200974061:200974435:200974570,	200973894	200974061	200973941	200973941	Frame_Shift_Del	C	-	p.A285fs
SARC	TCGA-DX-A6YZ-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
SARC	TCGA-IE-A4EK-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390617	197390617	Frame_Shift_Del	G	-	p.K553fs
SARC	TCGA-DX-AB2J-01	SNUPN	ENST00000371091.5,ENST00000564644.1	chr15	75913386:75913397:75917055:75917276:75917676:75917979,	75917056	75917276	75917120	75917121	Frame_Shift_Ins	-	T	p.K19fs
SARC	TCGA-DX-AB2H-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000445855.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136432967:136433056:136437742:136437894:136467002:136467106,	136437743	136437894	136437847	136437860	Frame_Shift_Del	GCCTGTTTACTATA	-	p.MPVYYS769fs
SARC	TCGA-DX-AB2H-01	HR	ENST00000381418.4,ENST00000517699.1,ENST00000312841.8	chr8	21977631:21977686:21977854:21978020:21978228:21978471,	21977855	21978020	21977962	21977965	Frame_Shift_Del	GCTT	-	p.EA889fs
SARC	TCGA-DX-AB2H-01	EXOSC8	ENST00000474661.1,ENST00000464235.1,ENST00000495092.1,ENST00000490537.2,ENST00000389704.3,ENST00000488779.1,ENST00000239893.5	chr13	37580093:37580162:37580251:37580297:37581111:37581208,	37580252	37580297	37580294	37580294	Frame_Shift_Del	A	-	p.G129fs
SARC	TCGA-QQ-A5VA-01	SLC22A9	ENST00000279178.3,ENST00000536333.1,ENST00000310969.4	chr11	63143116:63143240:63149630:63149749:63173968:63174183,	63149631	63149749	63149670	63149671	Frame_Shift_Ins	-	A	p.K332fs
SARC	TCGA-QQ-A5VA-01	MTHFD1	ENST00000545908.1,ENST00000555252.1,ENST00000216605.8	chr14	64882356:64882457:64884605:64884742:64886531:64886643,	64884606	64884742	64884678	64884679	Frame_Shift_Ins	-	G	p.S184fs
SARC	TCGA-DX-A2IZ-01	ARL13B	ENST00000335438.3,ENST00000303097.7,ENST00000471138.1,ENST00000535334.1,ENST00000394222.3,ENST00000460371.1,ENST00000539730.1	chr3	93768249:93768366:93769667:93769736:93772030:93772144,	93769668	93769736	93769680	93769680	Frame_Shift_Del	C	-	p.T282fs
SARC	TCGA-DX-A2IZ-01	DCTN4	ENST00000447998.2,ENST00000446090.2,ENST00000424236.1	chr5	150095126:150095224:150097837:150097945:150099277:150099332,	150097838	150097945	150097914	150097914	Frame_Shift_Del	G	-	p.P332fs
SARC	TCGA-DX-A6BK-01	MEN1	ENST00000337652.1,ENST00000377326.3,ENST00000377313.1,ENST00000478548.1,ENST00000443283.1,ENST00000394374.2,ENST00000377321.1,ENST00000312049.6,ENST00000315422.4,ENST00000394376.1	chr11	64571846:64572288:64572505:64572670:64573106:64573242,	64572506	64572670	64572627	64572627	Frame_Shift_Del	A	-	p.F415fs
SARC	TCGA-X6-A8C6-01	PDS5A	ENST00000303538.8,ENST00000503396.1	chr4	39900008:39900148:39900396:39900445:39902045:39902127,	39900397	39900445	39900418	39900421	Frame_Shift_Del	CAAA	-	p.FG536fs
SARC	TCGA-DX-A1L2-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174819714	174819715	Frame_Shift_Ins	-	T	p.S509fs
SARC	TCGA-DX-A1L2-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939918	76939919	Frame_Shift_Ins	-	C	p.H277fs
SARC	TCGA-HB-A2OT-01	MRVI1	ENST00000424001.1,ENST00000558540.1	chr11	10651231:10651258:10653537:10653608:10673571:10673729,	10653538	10653608	10653562	10653562	Frame_Shift_Del	A	-	p.S35fs
SARC	TCGA-HB-A2OT-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39587561	39587562	Frame_Shift_Del	CA	-	p.TE609fs
SARC	TCGA-DX-A1KX-01	PLEK2	ENST00000216446.4,ENST00000553387.1	chr14	67854968:67855019:67859042:67859144:67859378:67859422,67857439:67857463:67859042:67859144:67859378:67859422,	67859043	67859144	67859099	67859099	Frame_Shift_Del	G	-	p.L239fs
SARC	TCGA-K1-A6RV-01	BCAS3	ENST00000585744.1,ENST00000588462.1,ENST00000390652.5	chr17	59093111:59093262:59104226:59104271:59112026:59112151,	59104227	59104271	59104259	59104260	Frame_Shift_Ins	-	A	p.K557fs
SARC	TCGA-X2-A95T-01	TADA3	ENST00000440161.1,ENST00000301964.2,ENST00000343450.2,ENST00000492103.1	chr3	9825711:9825897:9826999:9827109:9828689:9828793,	9827000	9827109	9827049	9827050	Frame_Shift_Del	CT	-	p.SG290fs
SARC	TCGA-X2-A95T-01	RSL1D1	ENST00000542106.1,ENST00000396503.3	chr16	11940590:11940700:11941524:11941663:11944135:11944270,11940590:11940700:11941524:11941663:11945264:11945365,	11941525	11941663	11941583	11941584	Frame_Shift_Del	TT	-	p.K109fs
SARC	TCGA-X2-A95T-01	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165229	50165230	Frame_Shift_Del	AC	-	p.VF319fs
SARC	TCGA-X2-A95T-01	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165229	50165230	Frame_Shift_Del	AC	-	p.VF319fs
SARC	TCGA-X2-A95T-01	MGME1	ENST00000377709.1	chr20	17950699:17951013:17956326:17956546:17968808:17968941,17950673:17950773:17956326:17956546:17968808:17968941,	17956327	17956546	17956397	17956398	Frame_Shift_Del	AG	-	p.KE194fs
SARC	TCGA-X2-A95T-01	MICALL1	ENST00000454685.1	chr22	38321853:38322050:38323417:38323827:38327805:38327940,	38323418	38323827	38323604	38323605	Frame_Shift_Del	CT	-	p.P551fs
SARC	TCGA-X2-A95T-01	MICALL1	ENST00000215957.6	chr22	38321853:38322050:38323417:38323833:38327805:38327940,	38323418	38323833	38323604	38323605	Frame_Shift_Del	CT	-	p.P551fs
SARC	TCGA-X2-A95T-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939473	76939474	Frame_Shift_Del	TT	-	p.K425fs
SARC	TCGA-K1-A42W-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577029	7577032	Frame_Shift_Del	GCTC	-	p.GS302fs
SARC	TCGA-DX-AB30-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527470	29527471	Frame_Shift_Ins	-	T	p.C307fs
SARC	TCGA-X6-A7WB-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559113	Frame_Shift_Del	G	-	p.P1074fs
SARC	TCGA-VT-A80G-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
SARC	TCGA-MB-A8JK-01	CTTN	ENST00000376561.3,ENST00000301843.8,ENST00000346329.3	chr11	70263118:70263229:70265851:70265962:70266505:70266616,	70265852	70265962	70265954	70265954	Frame_Shift_Del	C	-	p.S224fs
SARC	TCGA-DX-A3U5-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.N146fs
SARC	TCGA-N1-A6IA-01	PNPT1	ENST00000260604.4,ENST00000415374.1,ENST00000447944.2,ENST00000415489.1	chr2	55874535:55874588:55882034:55882088:55883265:55883355,	55882035	55882088	55882064	55882064	Frame_Shift_Del	C	-	p.C489fs
SARC	TCGA-N1-A6IA-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578284	7578284	Frame_Shift_Del	C	-	p.A189fs
SARC	TCGA-DX-A48N-01	SOS1	ENST00000426016.1,ENST00000402219.2	chr2	39214613:39214732:39222263:39222528:39224062:39224179,39216410:39216455:39222263:39222528:39224062:39224179,	39222264	39222528	39222520	39222520	Frame_Shift_Del	T	-	p.K1030fs
SARC	TCGA-X6-A8C2-01	ZEB2	ENST00000539609.3,ENST00000303660.4,ENST00000409487.3,ENST00000558170.2	chr2	145153978:145154159:145155867:145157837:145158765:145158874,	145155868	145157837	145157714	145157715	Frame_Shift_Del	TT	-	p.N347fs
SARC	TCGA-X6-A8C2-01	SLC8A3	ENST00000381269.2	chr14	70527552:70527656:70633355:70635201:70655095:70655787,	70633356	70635201	70634157	70634157	Frame_Shift_Del	G	-	p.P328fs
SARC	TCGA-X6-A8C2-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577134	7577134	Frame_Shift_Del	G	-	p.N268fs
SARC	TCGA-LI-A9QH-01	SLC2A8	ENST00000419917.1	chr9	130159509:130159565:130159654:130159817:130160183:130160390,130159509:130159565:130159654:130159817:130162185:130162281,	130159655	130159817	130159733	130159733	Frame_Shift_Del	C	-	p.G45fs
SARC	TCGA-LI-A9QH-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465991	59465992	Frame_Shift_Ins	-	A	p.E891fs
SARC	TCGA-DX-A8BM-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938366	76938367	Frame_Shift_Ins	-	T	p.R794fs
SARC	TCGA-DX-A8BJ-01	RAP1GDS1	ENST00000380158.4,ENST00000408900.3	chr4	99300309:99300314:99313102:99313231:99325627:99325737,99273663:99273752:99313102:99313231:99325627:99325737,	99313103	99313231	99313196	99313205	Frame_Shift_Del	TGTGTCTTGT	-	p.MCLV201fs
SARC	TCGA-DX-A8BJ-01	PPHLN1	ENST00000432191.2	chr12	42835116:42835231:42836442:42836543:42839774:42840092,	42836443	42836543	42836472	42836472	Frame_Shift_Del	C	-	p.P298fs
SARC	TCGA-QQ-A5V9-01	NCKAP1	ENST00000360982.2,ENST00000361354.4	chr2	183817520:183817651:183817840:183818059:183821189:183821321,	183817841	183818059	183817934	183817934	Frame_Shift_Del	T	-	p.D766fs
SARC	TCGA-DX-AB3C-01	ABL1	ENST00000318560.5,ENST00000372348.2	chr9	133730187:133730483:133738149:133738422:133747515:133747600,	133738150	133738422	133738153	133738156	Frame_Shift_Del	TACG	-	p.YV185fs
SARC	TCGA-K1-A42X-01	DDX25	ENST00000526875.1,ENST00000263576.6,ENST00000525943.1	chr11	125788522:125788685:125791085:125791274:125792714:125792777,	125791086	125791274	125791202	125791202	Frame_Shift_Del	A	-	p.K441fs
SARC	TCGA-DX-A6B8-01	FLAD1	ENST00000368432.1,ENST00000315144.10	chr1	154955906:154956109:154956317:154956542:154960580:154960909,154955813:154955873:154956317:154956542:154959941:154960076,154955842:154955873:154956317:154956542:154960580:154960643,	154956318	154956542	154956441	154956442	Frame_Shift_Ins	-	T	p.G91fs
SARC	TCGA-DX-A6B8-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.G73fs
SARC	TCGA-HB-A43Z-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577153	7577153	Frame_Shift_Del	C	-	p.G262fs
SARC	TCGA-HB-A43Z-01	NMRK2	ENST00000597889.1,ENST00000168977.2,ENST00000593949.1	chr19	3939897:3939969:3941068:3941175:3942080:3942172,	3941069	3941175	3941082	3941082	Frame_Shift_Del	A	-	p.T137fs
SARC	TCGA-3B-A9HX-01	DNMT3A	ENST00000321117.5	chr2	25523007:25523112:25536781:25537030:25564694:25564754,	25536782	25537030	25536821	25536822	Frame_Shift_Ins	-	A	p.D11fs
SARC	TCGA-3B-A9HX-01	DNMT3A	ENST00000321117.5	chr2	25523007:25523112:25536781:25537030:25564694:25564754,	25536782	25537030	25536823	25536824	Frame_Shift_Del	CC	-	p.GD10fs
SARC	TCGA-3B-A9HX-01	KIF21A	ENST00000551264.1	chr12	39705218:39705355:39713707:39713815:39716469:39716684,	39713708	39713815	39713783	39713784	Frame_Shift_Ins	-	T	p.S1235fs
SARC	TCGA-MO-A47P-01	TSC2	ENST00000353929.4,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2108747:2108874:2110670:2110814:2111871:2112009,	2110671	2110814	2110734	2110734	Frame_Shift_Del	A	-	p.K348fs
SARC	TCGA-3B-A9I1-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103259	61103260	Frame_Shift_Ins	-	A	p.K541fs
SARC	TCGA-PC-A5DM-01	TNFRSF11A	ENST00000269485.7,ENST00000586569.1	chr18	60017044:60017170:60021623:60021767:60025480:60025574,	60021624	60021767	60021663	60021663	Frame_Shift_Del	C	-	p.T108fs
SARC	TCGA-PC-A5DM-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939007	76939014	Frame_Shift_Del	TAGCTGTA	-	p.TTAK578fs
SARC	TCGA-QC-AA9N-01	TSC2	ENST00000353929.4,ENST00000568566.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2114272:2114428:2115519:2115636:2120456:2120579,	2115520	2115636	2115569	2115596	Frame_Shift_Del	TGGCCGCATACTCGGCCTCCTTGGAGGA	-	p.VAAYSASLED550fs
SARC	TCGA-QC-AA9N-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938331	76938331	Frame_Shift_Del	T	-	p.K807fs
SARC	TCGA-DX-A7ER-01	MED21	ENST00000282892.3	chr12	27175509:27175554:27179352:27179467:27180279:27180380,	27179353	27179467	27179393	27179418	Frame_Shift_Del	AATGTGGTCCTCCTGCCTCTTTCAAT	-	p.QCGPPASFN28fs
SARC	TCGA-3B-A9HL-01	CCDC30	ENST00000509712.1,ENST00000477155.1	chr1	43000559:43000660:43002146:43002272:43011080:43011250,	43002147	43002272	43002200	43002201	Frame_Shift_Del	AG	-	p.KE15fs
SARC	TCGA-3B-A9HL-01	ABCA5	ENST00000392676.3,ENST00000392677.2,ENST00000593153.1,ENST00000588877.1,ENST00000589975.1	chr17	67300809:67300951:67302865:67303095:67304420:67304509,	67302866	67303095	67302911	67302912	Frame_Shift_Ins	-	T	p.K248fs
SARC	TCGA-WK-A8Y0-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574025	7574025	Frame_Shift_Del	C	-	p.G334fs
SARC	TCGA-WK-A8Y0-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22804359	22804359	Frame_Shift_Del	T	-	p.T1175fs
SARC	TCGA-X6-A8C7-01	RAVER1	ENST00000293677.6	chr19	10431533:10431627:10431723:10431935:10432206:10432291,	10431724	10431935	10431727	10431728	Frame_Shift_Ins	-	G	p.R507fs
SARC	TCGA-X9-A971-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577093	7577094	Frame_Shift_Del	CG	-	p.R283fs
SARC	TCGA-X6-A8C4-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968043	5968044	Frame_Shift_Ins	-	T	p.NK729fs
SARC	TCGA-DX-A7EM-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037932	49037933	Frame_Shift_Del	TG	-	p.IV724fs
SARC	TCGA-DX-AB2S-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581488	17581489	Frame_Shift_Ins	-	T	p.F37fs
SARC	TCGA-DX-A1KY-01	ATR	ENST00000350721.4	chr3	142278092:142278283:142279104:142279296:142280084:142280238,	142279105	142279296	142279108	142279108	Frame_Shift_Del	T	-	p.N513fs
SARC	TCGA-IW-A3M5-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43006004:43006210:43006303:43006430:43006579:43006725,	43006304	43006430	43006382	43006385	Frame_Shift_Del	TGTC	-	p.DM1580fs
SARC	TCGA-WK-A8XS-01	COL23A1	ENST00000407622.1	chr5	177681974:177682027:177682787:177682890:177683353:177683398,	177682788	177682890	177682817	177682817	Frame_Shift_Del	T	-	p.N283fs
SARC	TCGA-IE-A4EI-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574019	7574020	Frame_Shift_Del	CT	-	p.E336fs
SARC	TCGA-DX-A6Z0-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577074	7577075	Frame_Shift_Ins	-	TTCTC	p.T288fs
SARC	TCGA-DX-AB2E-01	AGK	ENST00000473884.1,ENST00000494688.1,ENST00000355413.4,ENST00000535825.1,ENST00000473247.1	chr7	141313945:141313978:141315270:141315365:141321531:141321590,	141315271	141315365	141315323	141315323	Frame_Shift_Del	G	-	p.S159fs
SARC	TCGA-DX-A1KW-01	TNS3	ENST00000311160.9,ENST00000398879.1,ENST00000355730.3,ENST00000457718.1	chr7	47384521:47384636:47385784:47385954:47407961:47408799,	47385785	47385954	47385934	47385934	Frame_Shift_Del	G	-	p.L768fs
SARC	TCGA-DX-AB32-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000506705.1,ENST00000505590.1,ENST00000512499.1,ENST00000503416.1	chr4	100057687:100057848:100060211:100060299:100062691:100062776,	100060212	100060299	100060216	100060216	Frame_Shift_Del	T	-	p.I135fs
SARC	TCGA-DX-AB32-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.I1028fs
SARC	TCGA-DX-AB32-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735965	4735966	Frame_Shift_Ins	-	C	p.G701fs
SARC	TCGA-DX-A48L-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
SARC	TCGA-Z4-A8JB-01	PIF1	ENST00000333425.6,ENST00000560444.1	chr15	65114676:65114809:65115976:65116553:65117767:65117838,65114676:65114809:65115976:65116553:65117791:65117816,	65115977	65116553	65116247	65116247	Frame_Shift_Del	G	-	p.P96fs
SARC	TCGA-DX-AB2Q-01	MYH15	ENST00000273353.3	chr3	108179146:108179214:108181957:108182090:108183484:108183661,	108181958	108182090	108182019	108182020	Frame_Shift_Ins	-	AATACAG	p.-621fs
SARC	TCGA-QQ-A5VD-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961028	39961028	Frame_Shift_Del	C	-	p.L514fs
SARC	TCGA-DX-A3LU-01	PAK3	ENST00000446737.1,ENST00000519681.1,ENST00000518291.1,ENST00000360648.4,ENST00000372010.1,ENST00000372007.5,ENST00000425146.1,ENST00000417227.1,ENST00000262836.4	chrX	110406142:110406274:110406789:110406955:110416245:110416309,	110406790	110406955	110406911	110406912	Frame_Shift_Ins	-	A	p.K262fs
SARC	TCGA-DX-A3U7-01	USP24	ENST00000407756.1,ENST00000294383.6	chr1	55532040:55534780:55537486:55537597:55537989:55538076,	55537487	55537597	55537558	55537559	Frame_Shift_Ins	-	T	p.A2577fs
SARC	TCGA-IS-A3K6-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135744087	135744087	Frame_Shift_Del	G	-	p.P785fs
SARC	TCGA-DX-A7EL-01	ELAC2	ENST00000484122.1,ENST00000426905.3,ENST00000480891.1,ENST00000446899.1,ENST00000395962.2,ENST00000338034.4	chr17	12905762:12905896:12906795:12906891:12908305:12908387,	12906796	12906891	12906831	12906832	Frame_Shift_Del	CA	-	p.V348fs
SARC	TCGA-DX-A48U-01	DOCK2	ENST00000520836.1,ENST00000256935.8,ENST00000520181.1,ENST00000520908.1,ENST00000519628.1,ENST00000540750.1,ENST00000524185.1	chr5	169186720:169186779:169188522:169188629:169230061:169230210,	169188523	169188629	169188536	169188536	Frame_Shift_Del	G	-	p.E821fs
SARC	TCGA-DX-A48U-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5211600:5211779:5211975:5212261:5212347:5212502,	5211976	5212261	5212070	5212070	Frame_Shift_Del	G	-	p.T1655fs
SARC	TCGA-3R-A8YX-01	DPY19L2	ENST00000538147.1,ENST00000324472.4,ENST00000536494.1	chr12	64055140:64055261:64057537:64057625:64059614:64059639,	64057538	64057625	64057604	64057605	Frame_Shift_Del	AA	-	p.F128fs
SARC	TCGA-3R-A8YX-01	KCTD10	ENST00000537165.1	chr12	109895434:109895487:109895796:109895886:109898440:109898610,	109895797	109895886	109895815	109895816	Frame_Shift_Del	AA	-	p.L152fs
SARC	TCGA-3R-A8YX-01	KCTD10	ENST00000542858.1	chr12	109895434:109895487:109895796:109895853:109898440:109898610,	109895797	109895853	109895815	109895816	Frame_Shift_Del	AA	-	p.L152fs
SARC	TCGA-3R-A8YX-01	KCTD10	ENST00000538161.1,ENST00000540411.1,ENST00000228495.6	chr12	109895434:109895487:109895796:109895883:109898440:109898610,	109895797	109895883	109895815	109895816	Frame_Shift_Del	AA	-	p.L152fs
SARC	TCGA-3R-A8YX-01	KCTD10	ENST00000541077.1	chr12	109895434:109895487:109895796:109895989:109898440:109898610,	109895797	109895989	109895815	109895816	Frame_Shift_Del	AA	-	p.L152fs
SARC	TCGA-KD-A5QS-01	SNAP91	ENST00000439399.2,ENST00000518312.1,ENST00000369694.2,ENST00000521616.1,ENST00000428679.2,ENST00000521485.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1	chr6	84304092:84304200:84310989:84311157:84311303:84311318,	84310990	84311157	84311022	84311023	Frame_Shift_Ins	-	T	p.C431fs
SARC	TCGA-KD-A5QS-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
SARC	TCGA-KD-A5QS-01	SLC52A3	ENST00000381944.3	chr20	744141:744647:745851:746469:748940:749126,	745852	746469	746010	746020	Frame_Shift_Del	AGTAGGTGGGC	-	p.LPTYY133fs
SARC	TCGA-3B-A9HO-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551295	165551296	Frame_Shift_Ins	-	A	p.S869fs
SARC	TCGA-3B-A9HO-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551295	165551296	Frame_Shift_Ins	-	A	p.S869fs
SARC	TCGA-DX-AB2O-01	TRIM46	ENST00000368382.1,ENST00000545012.1,ENST00000368385.4,ENST00000468878.1,ENST00000392451.2,ENST00000474430.1,ENST00000334634.4,ENST00000543729.1,ENST00000368383.3	chr1	155149670:155149766:155150477:155150731:155150967:155151089,	155150478	155150731	155150521	155150521	Frame_Shift_Del	G	-	p.R318fs
SARC	TCGA-DX-A6BF-01	TEKT4	ENST00000468063.1,ENST00000295201.4	chr2	95539264:95539335:95539709:95539853:95540520:95540743,	95539710	95539853	95539829	95539830	Frame_Shift_Ins	-	G	p.L230fs
SARC	TCGA-DX-A2J4-01	COMTD1	ENST00000469299.1	chr10	76995072:76995130:76995377:76995501:76995592:76995683,	76995378	76995501	76995486	76995486	Frame_Shift_Del	G	-	p.P37fs
SARC	TCGA-DX-AB3C-01	ABL1	ENST00000318560.5,ENST00000372348.2	chr9	133730187:133730483:133738149:133738422:133747515:133747600,	133738150	133738422	133738153	133738156	Frame_Shift_Del	TACG	-	p.Y204fs
SARC	TCGA-FX-A48G-01	ACTA2	ENST00000458208.1,ENST00000224784.6	chr10	90699263:90699455:90700985:90701147:90701541:90701626,	90700986	90701147	90701022	90701025	Frame_Shift_Del	TCTT	-	p.K193fs
SARC	TCGA-DX-A6B7-01	ARFGEF1	ENST00000520381.1,ENST00000262215.3	chr8	68170319:68170525:68172049:68172161:68178240:68178442,	68172050	68172161	68172143	68172144	Frame_Shift_Ins	-	TT	p.G716fs
SARC	TCGA-DX-A2IZ-01	ARL13B	ENST00000335438.3,ENST00000303097.7,ENST00000471138.1,ENST00000535334.1,ENST00000394222.3,ENST00000460371.1,ENST00000539730.1	chr3	93768249:93768366:93769667:93769736:93772030:93772144,	93769668	93769736	93769680	93769680	Frame_Shift_Del	C	-	p.P386fs
SARC	TCGA-3B-A9HT-01	ATP8A1	ENST00000381668.5,ENST00000264449.10	chr4	42626552:42626651:42627630:42627730:42629011:42629126,	42627631	42627730	42627651	42627652	Frame_Shift_Ins	-	A	p.L81fs
SARC	TCGA-DX-A8BU-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937049	76937053	Frame_Shift_Del	TAAAT	-	p.N1232fs
SARC	TCGA-DX-A8BV-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937766	76937769	Frame_Shift_Del	TTTC	-	p.K993fs
SARC	TCGA-DX-A8BM-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938366	76938367	Frame_Shift_Ins	-	T	p.K796fs
SARC	TCGA-K1-A6RV-01	BCAS3	ENST00000585744.1,ENST00000588462.1,ENST00000390652.5	chr17	59093111:59093262:59104226:59104271:59112026:59112151,	59104227	59104271	59104259	59104260	Frame_Shift_Ins	-	A	p.A559fs
SARC	TCGA-DX-AB2T-01	BTBD10	ENST00000528120.1,ENST00000527102.2,ENST00000530907.1,ENST00000278174.5	chr11	13410248:13410688:13424714:13424825:13427205:13427403,	13424715	13424825	13424802	13424803	Frame_Shift_Del	TA	-	p.Y343fs
SARC	TCGA-3B-A9HT-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492902	68492902	Frame_Shift_Del	A	-	p.N115fs
SARC	TCGA-IE-A4EK-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390617	197390617	Frame_Shift_Del	G	-	p.V554fs
SARC	TCGA-DX-AB2J-01	CREBBP	ENST00000382070.3	chr16	3860603:3860780:3900297:3901010:3929832:3930121,	3900298	3901010	3900553	3900553	Frame_Shift_Del	A	-	p.F181fs
SARC	TCGA-MB-A8JK-01	CTTN	ENST00000376561.3,ENST00000301843.8,ENST00000346329.3	chr11	70263118:70263229:70265851:70265962:70266505:70266616,	70265852	70265962	70265954	70265954	Frame_Shift_Del	C	-	p.Q225fs
SARC	TCGA-WP-A9GB-01	DALRD3	ENST00000313778.5,ENST00000484831.1,ENST00000341949.4,ENST00000420952.2,ENST00000441576.2,ENST00000395462.4,ENST00000440857.1,ENST00000460505.1	chr3	49054866:49054946:49055045:49055302:49055455:49055466,	49055046	49055302	49055208	49055209	Frame_Shift_Del	CT	-	p.R185fs
SARC	TCGA-IW-A3M6-01	DCAF17	ENST00000468592.1	chr2	172314480:172314585:172325397:172325540:172330375:172330485,	172325398	172325540	172325408	172325409	Frame_Shift_Ins	-	T	p.L283fs
SARC	TCGA-DX-A2IZ-01	DCTN4	ENST00000447998.2,ENST00000446090.2,ENST00000424236.1	chr5	150095126:150095224:150097837:150097945:150099277:150099332,	150097838	150097945	150097914	150097914	Frame_Shift_Del	G	-	p.P339fs
SARC	TCGA-3B-A9HT-01	DENND6A	ENST00000311128.5	chr3	57616651:57616705:57618991:57619081:57620284:57620349,	57618992	57619081	57619022	57619023	Frame_Shift_Ins	-	A	p.L441fs
SARC	TCGA-DX-AB2X-01	EBF1	ENST00000519739.1,ENST00000313708.6,ENST00000517373.1,ENST00000522192.1,ENST00000518836.1	chr5	158267036:158267118:158500403:158500472:158511673:158511747,	158500404	158500472	158500455	158500465	Frame_Shift_Del	TTCTTGTCACA	-	p.C165fs
SARC	TCGA-3B-A9HT-01	EDA2R	ENST00000451436.2	chrX	65817619:65817935:65819315:65819702:65822474:65822639,65817619:65817935:65819315:65819702:65822565:65822639,	65819316	65819702	65819393	65819393	Frame_Shift_Del	C	-	p.G297fs
SARC	TCGA-DX-AB2H-01	EXOSC8	ENST00000474661.1,ENST00000464235.1,ENST00000495092.1,ENST00000490537.2,ENST00000389704.3,ENST00000488779.1,ENST00000239893.5	chr13	37580093:37580162:37580251:37580297:37581111:37581208,	37580252	37580297	37580294	37580294	Frame_Shift_Del	A	-	p.K130fs
SARC	TCGA-3B-A9HT-01	FAS	ENST00000352159.4,ENST00000477270.1,ENST00000487314.1,ENST00000357339.2,ENST00000313771.5,ENST00000355740.2,ENST00000355279.2,ENST00000371857.3	chr10	90767456:90767594:90768645:90768754:90770295:90770357,	90768646	90768754	90768708	90768708	Frame_Shift_Del	T	-	p.C135fs
SARC	TCGA-QQ-A5VB-01	FBXO5	ENST00000367241.3,ENST00000229758.3	chr6	153291663:153292549:153293406:153293589:153294180:153294271,	153293407	153293589	153293556	153293556	Frame_Shift_Del	T	-	p.T315fs
SARC	TCGA-DX-A6YQ-01	FOSB	ENST00000417353.2	chr19	45971692:45971970:45973886:45974207:45975808:45975811,	45973887	45974207	45974168	45974168	Frame_Shift_Del	C	-	p.P137fs
SARC	TCGA-DX-A3U9-01	HERC1	ENST00000443617.2	chr15	63956668:63956793:63958117:63958349:63958554:63958671,	63958118	63958349	63958195	63958199	Frame_Shift_Del	ATTTG	-	p.S2825fs
SARC	TCGA-DX-A3LW-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41807440:41807609:41808569:41808854:41809876:41809961,	41808570	41808854	41808550	41808584	Frame_Shift_Del	GGGCACTTCCTTCCTCCTAGCCAACTTCACGTTGC	-	p.D582fs
SARC	TCGA-DX-AB2H-01	HR	ENST00000381418.4,ENST00000517699.1,ENST00000312841.8	chr8	21977631:21977686:21977854:21978020:21978228:21978471,	21977855	21978020	21977962	21977965	Frame_Shift_Del	GCTT	-	p.E889fs
SARC	TCGA-KD-A5QU-01	IFI44L	ENST00000476521.1	chr1	79101021:79101174:79102784:79102888:79106705:79106806,	79102785	79102888	79102851	79102851	Frame_Shift_Del	A	-	p.V339fs
SARC	TCGA-KD-A5QU-01	IFI44L	ENST00000486882.1,ENST00000342282.3,ENST00000370751.5,ENST00000476876.1	chr1	79101021:79101174:79102716:79102888:79106705:79106806,	79102717	79102888	79102851	79102851	Frame_Shift_Del	A	-	p.V339fs
SARC	TCGA-DX-A8BP-01	IRF2	ENST00000512020.1	chr4	185340622:185340722:185350131:185350224:185395532:185395702,	185350132	185350224	185350106	185350137	Frame_Shift_Del	ACATACACCCACCCTGACCCACTCACCTTGTT	-	p.N28fs
SARC	TCGA-X2-A95T-01	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165229	50165230	Frame_Shift_Del	AC	-	p.F320fs
SARC	TCGA-X2-A95T-01	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165229	50165230	Frame_Shift_Del	AC	-	p.F320fs
SARC	TCGA-WP-A9GB-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39800543	39800544	Frame_Shift_Del	AG	-	p.D2799fs
SARC	TCGA-IS-A3K6-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135744087	135744087	Frame_Shift_Del	G	-	p.M786fs
SARC	TCGA-DX-AB2V-01	MASP1	ENST00000392470.2,ENST00000296280.6,ENST00000392472.2,ENST00000169293.6,ENST00000337774.5	chr3	186970955:186971103:186974451:186974648:186978528:186978660,	186974452	186974648	186974575	186974575	Frame_Shift_Del	G	-	p.K208fs
SARC	TCGA-DX-A7ER-01	MED21	ENST00000282892.3	chr12	27175509:27175554:27179352:27179467:27180279:27180380,	27179353	27179467	27179393	27179418	Frame_Shift_Del	AATGTGGTCCTCCTGCCTCTTTCAAT	-	p.C29fs
SARC	TCGA-X2-A95T-01	MGME1	ENST00000377709.1	chr20	17950699:17951013:17956326:17956546:17968808:17968941,17950673:17950773:17956326:17956546:17968808:17968941,	17956327	17956546	17956397	17956398	Frame_Shift_Del	AG	-	p.D197fs
SARC	TCGA-DX-A7EL-01	MORC3	ENST00000400485.1,ENST00000487909.1	chr21	37736390:37736557:37741285:37742174:37744671:37744829,	37741286	37742174	37741363	37741363	Frame_Shift_Del	C	-	p.S566fs
SARC	TCGA-HB-A2OT-01	MRVI1	ENST00000424001.1,ENST00000558540.1	chr11	10651231:10651258:10653537:10653608:10673571:10673729,	10653538	10653608	10653562	10653562	Frame_Shift_Del	A	-	p.S117fs
SARC	TCGA-SI-A71P-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29533257:29533389:29541468:29541603:29546022:29546136,	29541469	29541603	29541587	29541588	Frame_Shift_Ins	-	A	p.L506fs
SARC	TCGA-DX-A23R-01	NISCH	ENST00000345716.4,ENST00000489895.1,ENST00000488380.1,ENST00000490425.1,ENST00000479054.1,ENST00000420808.2	chr3	52504874:52504923:52505829:52505993:52506318:52506389,	52505830	52505993	52505830	52505831	Frame_Shift_Del	GA	-	p.E138fs
SARC	TCGA-DX-AB2W-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13165994:13166110:13167417:13167567:13167945:13168039,	13167418	13167567	13167497	13167509	Frame_Shift_Del	AAGTTAGAGCTAC	-	p.L361fs
SARC	TCGA-DX-A3LU-01	PAK3	ENST00000446737.1,ENST00000519681.1,ENST00000518291.1,ENST00000360648.4,ENST00000372010.1,ENST00000372007.5,ENST00000425146.1,ENST00000417227.1,ENST00000262836.4	chrX	110406142:110406274:110406789:110406955:110416245:110416309,	110406790	110406955	110406911	110406912	Frame_Shift_Ins	-	A	p.S280fs
SARC	TCGA-3B-A9HT-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678784	52678784	Frame_Shift_Del	T	-	p.I279fs
SARC	TCGA-DX-AB32-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.K1027fs
SARC	TCGA-WK-A8XT-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087892	32087892	Frame_Shift_Del	G	-	p.D1448fs
SARC	TCGA-DX-A8BV-01	PKMYT1	ENST00000431515.2	chr16	3018353:3018516:3022635:3022755:3023138:3023216,	3022636	3022755	3022637	3022637	Frame_Shift_Del	G	-	p.R503fs
SARC	TCGA-DX-A8BJ-01	PPHLN1	ENST00000432191.2	chr12	42835116:42835231:42836442:42836543:42839774:42840092,	42836443	42836543	42836472	42836472	Frame_Shift_Del	C	-	p.P353fs
SARC	TCGA-DX-AB2E-01	PPP3CC	ENST00000523620.1,ENST00000289963.8,ENST00000522034.1,ENST00000240139.5,ENST00000397775.3,ENST00000521651.1,ENST00000518852.1	chr8	22368598:22368744:22370805:22370945:22380003:22380081,	22370806	22370945	22370843	22370844	Frame_Shift_Ins	-	GTGTGACCTGC	p.L227fs
SARC	TCGA-HB-A2OT-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39587561	39587562	Frame_Shift_Del	CA	-	p.E610fs
SARC	TCGA-DX-AB2H-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000445855.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136432967:136433056:136437742:136437894:136467002:136467106,	136437743	136437894	136437847	136437860	Frame_Shift_Del	GCCTGTTTACTATA	-	p.P770fs
SARC	TCGA-DX-A7EM-01	RB1	ENST00000267163.4	chr13	49033823:49033969:49037866:49037971:49039133:49039247,	49037867	49037971	49037932	49037933	Frame_Shift_Del	TG	-	p.V725fs
SARC	TCGA-SG-A849-01	RECQL	ENST00000421138.2,ENST00000542432.1,ENST00000396093.3,ENST00000314748.6,ENST00000536964.1,ENST00000539672.1,ENST00000444129.2,ENST00000536240.1	chr12	21643308:21643312:21644452:21644650:21652488:21652549,	21644453	21644650	21644546	21644547	Frame_Shift_Ins	-	T	p.V40fs
SARC	TCGA-QC-A6FX-01	RNF25	ENST00000295704.2,ENST00000463188.1,ENST00000473034.1	chr2	219529549:219529596:219529877:219529970:219530638:219530779,	219529878	219529970	219529965	219529965	Frame_Shift_Del	T	-	p.V194fs
SARC	TCGA-3B-A9HT-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958035	76958036	Frame_Shift_Ins	-	T	p.N868fs
SARC	TCGA-DX-A8BU-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2,ENST00000520467.1	chr11	9096027:9096162:9100930:9101056:9111253:9111370,	9100931	9101056	9101004	9101007	Frame_Shift_Del	CAAA	-	p.C102fs
SARC	TCGA-DX-A3M1-01	SLC41A2	ENST00000258538.3	chr12	105255068:105255148:105260209:105260357:105280070:105280217,	105260210	105260357	105260245	105260245	Frame_Shift_Del	G	-	p.W381fs
SARC	TCGA-X6-A8C3-01	SLC52A2	ENST00000526779.1	chr8	145582847:145583083:145583282:145583407:145583831:145584153,	145583283	145583407	145583332	145583332	Frame_Shift_Del	G	-	p.G61fs
SARC	TCGA-X6-A8C3-01	SLC52A2	ENST00000532887.1,ENST00000402965.1,ENST00000527078.1,ENST00000530047.1,ENST00000329994.2	chr8	145582847:145583083:145583282:145584153:145584249:145584343,	145583283	145584153	145583332	145583332	Frame_Shift_Del	G	-	p.G61fs
SARC	TCGA-KD-A5QS-01	SLC52A3	ENST00000381944.3	chr20	744141:744647:745851:746469:748940:749126,	745852	746469	746010	746020	Frame_Shift_Del	AGTAGGTGGGC	-	p.T135fs
SARC	TCGA-IW-A3M6-01	SLC6A7	ENST00000230671.2,ENST00000524041.1	chr5	149582141:149582266:149583229:149583342:149583469:149583601,	149583230	149583342	149583220	149583236	Frame_Shift_Del	CCTGGCCCAGGCCCTGG	-	p.A366fs
SARC	TCGA-DX-A7EF-01	SLC9A8	ENST00000417961.1	chr20	48466115:48466217:48467298:48467381:48471974:48472118,	48467299	48467381	48467301	48467301	Frame_Shift_Del	T	-	p.F182fs
SARC	TCGA-KD-A5QS-01	SNAP91	ENST00000439399.2,ENST00000518312.1,ENST00000369694.2,ENST00000521616.1,ENST00000428679.2,ENST00000521485.1,ENST00000520302.1,ENST00000195649.6,ENST00000521743.1	chr6	84304092:84304200:84310989:84311157:84311303:84311318,	84310990	84311157	84311022	84311023	Frame_Shift_Ins	-	T	p.T431fs
SARC	TCGA-HB-A3L4-01	SRF	ENST00000265354.4,ENST00000457278.2	chr6	43141584:43141851:43143443:43143705:43144285:43144405,	43143444	43143705	43143443	43143450	Frame_Shift_Del	GGACACAC	-	p.K261fs
SARC	TCGA-HB-A3L4-01	SRF	ENST00000265354.4,ENST00000457278.2	chr6	43141584:43141851:43143443:43143705:43144285:43144405,	43143444	43143705	43143452	43143453	Frame_Shift_Del	GA	-	p.K264fs
SARC	TCGA-QQ-A5VD-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961028	39961028	Frame_Shift_Del	C	-	p.R516fs
SARC	TCGA-X2-A95T-01	TADA3	ENST00000440161.1,ENST00000301964.2,ENST00000343450.2,ENST00000492103.1	chr3	9825711:9825897:9826999:9827109:9828689:9828793,	9827000	9827109	9827049	9827050	Frame_Shift_Del	CT	-	p.A292fs
SARC	TCGA-DX-A6BA-01	TEK	ENST00000406359.4,ENST00000380036.4	chr9	27109138:27109640:27157828:27158140:27168492:27168603,	27157829	27158140	27158026	27158026	Frame_Shift_Del	A	-	p.V86fs
SARC	TCGA-WK-A8Y0-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574025	7574025	Frame_Shift_Del	C	-	p.R335fs
SARC	TCGA-K1-A42W-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577029	7577032	Frame_Shift_Del	GCTC	-	p.S303fs
SARC	TCGA-DX-A6Z0-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577074	7577075	Frame_Shift_Ins	-	TTCTC	p.N288fs
SARC	TCGA-DX-A7ET-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579328	7579329	Frame_Shift_Ins	-	TAAG	p.K120fs
SARC	TCGA-DX-AB2O-01	TRIM46	ENST00000368382.1,ENST00000545012.1,ENST00000368385.4,ENST00000468878.1,ENST00000392451.2,ENST00000474430.1,ENST00000334634.4,ENST00000543729.1,ENST00000368383.3	chr1	155149670:155149766:155150477:155150731:155150967:155151089,	155150478	155150731	155150521	155150521	Frame_Shift_Del	G	-	p.L320fs
SARC	TCGA-FX-A3TO-01	UBAP1	ENST00000543944.1	chr9	34234213:34234338:34241182:34242106:34249776:34249959,34220905:34220946:34241182:34242106:34249776:34249959,	34241183	34242106	34241448	34241449	Frame_Shift_Del	AG	-	p.K207fs
SARC	TCGA-3B-A9HT-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2,ENST00000604860.1	chr15	25599674:25599830:25601038:25601203:25601837:25601977,	25601039	25601203	25601107	25601108	Frame_Shift_Ins	-	A	p.G688fs
SARC	TCGA-DX-A6YU-01	UGDH	ENST00000501493.2,ENST00000316423.6,ENST00000506179.1,ENST00000507089.1	chr4	39501530:39501873:39505494:39505605:39506036:39506128,	39505495	39505605	39505572	39505584	Frame_Shift_Del	GCATTTTTTTATG	-	p.H429fs
SARC	TCGA-DX-A3U7-01	USP24	ENST00000407756.1,ENST00000294383.6	chr1	55532040:55534780:55537486:55537597:55537989:55538076,	55537487	55537597	55537558	55537559	Frame_Shift_Ins	-	T	p.E2416fs
SARC	TCGA-3B-A9HT-01	ZNF131	ENST00000509156.1,ENST00000399534.1	chr5	43123310:43123412:43161350:43162033:43173419:43173550,43139266:43139411:43161350:43162033:43173419:43173550,	43161351	43162033	43161952	43161952	Frame_Shift_Del	A	-	p.I327fs
SARC	TCGA-DX-A1KX-01	ARAP3	ENST00000513878.1,ENST00000512390.1,ENST00000508305.1,ENST00000239440.4	chr5	141036070:141036204:141036284:141036413:141037931:141038046,	141036285	141036413	141036319	141036319	Frame_Shift_Del	T	-	p.V1208fs
SARC	TCGA-QC-AA9N-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938331	76938331	Frame_Shift_Del	T	-	p.K806fs
SARC	TCGA-DX-AATS-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939398	76939419	Frame_Shift_Del	ACAAGGTTTTTCTCCTTTTCGT	-	p.R444fs
SARC	TCGA-DX-A1L2-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939918	76939919	Frame_Shift_Ins	-	C	p.V277fs
SARC	TCGA-QQ-A5V9-01	CARD10	ENST00000403299.1,ENST00000251973.5,ENST00000437756.1,ENST00000476871.1	chr22	37903888:37903961:37904533:37904689:37906218:37906428,	37904534	37904689	37904671	37904671	Frame_Shift_Del	C	-	p.A310fs
SARC	TCGA-JV-A5VF-01	CBLN1	ENST00000536749.1	chr16	49313222:49313512:49314833:49314953:49315112:49315384,	49314834	49314953	49314890	49314891	Frame_Shift_Ins	-	T	p.G109fs
SARC	TCGA-PT-A8TR-01A-11D-A37C-09	CCDC24	ENST00000460543.1,ENST00000372318.3	chr1	44457991:44458059:44458194:44458311:44459561:44459636,44457883:44458059:44458194:44458311:44459511:44459636,44457883:44458059:44458194:44458311:44459558:44459636,	44458195	44458311	44458252	44458252	Frame_Shift_Del	G	-	p.E121fs
SARC	TCGA-QC-A7B5-01	CCT5	ENST00000515676.1,ENST00000506600.1,ENST00000280326.4,ENST00000515390.1,ENST00000503026.1	chr5	10261671:10261857:10262592:10262730:10263245:10263371,	10262593	10262730	10262666	10262666	Frame_Shift_Del	T	-	p.V418fs
SARC	TCGA-QC-AA9N-01	CES4A	ENST00000541479.1,ENST00000398354.1,ENST00000538199.1	chr16	67040293:67040422:67040647:67040720:67042876:67043217,67039160:67039296:67040647:67040720:67042876:67043217,	67040648	67040720	67040651	67040651	Frame_Shift_Del	T	-	p.S484fs
SARC	TCGA-DX-AB2V-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551295	165551296	Frame_Shift_Ins	-	A	p.L974fs
SARC	TCGA-DX-AB2V-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551295	165551296	Frame_Shift_Ins	-	A	p.L974fs
SARC	TCGA-IW-A3M5-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43006004:43006210:43006303:43006430:43006579:43006725,	43006304	43006430	43006382	43006385	Frame_Shift_Del	TGTC	-	p.D1580fs
SARC	TCGA-DX-A6B8-01	DDX43	ENST00000370336.4	chr6	74124270:74124409:74125219:74125307:74125835:74125974,	74125220	74125307	74125300	74125301	Frame_Shift_Ins	-	A	p.N610fs
SARC	TCGA-3B-A9HX-01	DNMT3A	ENST00000321117.5	chr2	25523007:25523112:25536781:25537030:25564694:25564754,	25536782	25537030	25536821	25536822	Frame_Shift_Ins	-	A	p.T12fs
SARC	TCGA-3B-A9HX-01	DNMT3A	ENST00000321117.5	chr2	25523007:25523112:25536781:25537030:25564694:25564754,	25536782	25537030	25536823	25536824	Frame_Shift_Del	CC	-	p.D11fs
SARC	TCGA-DX-A7EO-01	DPP3	ENST00000532019.1	chr11	66247914:66247936:66249759:66249941:66252643:66252733,	66249760	66249941	66249858	66249859	Frame_Shift_Ins	-	T	p.S64fs
SARC	TCGA-DX-A7EO-01	DPP3	ENST00000532677.1,ENST00000453114.1	chr11	66247914:66247936:66249666:66249941:66252643:66252733,	66249667	66249941	66249858	66249859	Frame_Shift_Ins	-	T	p.S64fs
SARC	TCGA-DX-A7EO-01	DPP3	ENST00000360510.2	chr11	66247914:66247936:66249663:66249941:66252643:66252733,	66249664	66249941	66249858	66249859	Frame_Shift_Ins	-	T	p.S64fs
SARC	TCGA-DX-A7EO-01	DPP3	ENST00000541961.1	chr11	66247914:66247936:66249650:66249941:66252643:66252733,	66249651	66249941	66249858	66249859	Frame_Shift_Ins	-	T	p.S64fs
SARC	TCGA-DX-AB30-01	EED	ENST00000263360.6,ENST00000327320.4,ENST00000525244.1,ENST00000533228.1,ENST00000351625.6	chr11	85975213:85975305:85977124:85977258:85979497:85979572,	85977125	85977258	85977214	85977214	Frame_Shift_Del	T	-	p.N272fs
SARC	TCGA-DX-A6B8-01	ENO2	ENST00000541477.1,ENST00000544774.1,ENST00000229277.1,ENST00000538763.1,ENST00000535366.1	chr12	7027103:7027326:7028729:7028927:7030743:7030945,	7028730	7028927	7028828	7028828	Frame_Shift_Del	A	-	p.K256fs
SARC	TCGA-DX-A6B8-01	FLAD1	ENST00000368432.1,ENST00000315144.10	chr1	154955906:154956109:154956317:154956542:154960580:154960909,154955813:154955873:154956317:154956542:154959941:154960076,154955842:154955873:154956317:154956542:154960580:154960643,	154956318	154956542	154956441	154956442	Frame_Shift_Ins	-	T	p.R91fs
SARC	TCGA-QQ-A5VA-01	IGF2BP2	ENST00000382199.2,ENST00000493302.1,ENST00000346192.3	chr3	185410486:185410550:185414399:185414451:185416086:185416135,	185414400	185414451	185414435	185414435	Frame_Shift_Del	A	-	p.L102fs
SARC	TCGA-DX-A7EN-01	LAG3	ENST00000441671.2,ENST00000203629.2	chr12	6882452:6882505:6882862:6883167:6883760:6884030,	6882863	6883167	6882880	6882880	Frame_Shift_Del	C	-	p.G77fs
SARC	TCGA-X6-A8C4-01	LARP4B	ENST00000448368.1,ENST00000316157.3	chr10	860885:861010:863664:863829:866739:866785,	863665	863829	863681	863681	Frame_Shift_Del	C	-	p.G560fs
SARC	TCGA-DX-A3U9-01	MAPK15	ENST00000338033.4,ENST00000533830.1	chr8	144802907:144803010:144803169:144803275:144803400:144803526,	144803170	144803275	144803216	144803216	Frame_Shift_Del	C	-	p.R323fs
SARC	TCGA-QC-A7B5-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.Q734fs
SARC	TCGA-DX-A8BS-01A-11D-A37C-09	MED23	ENST00000354577.4,ENST00000368068.3,ENST00000540546.1,ENST00000368053.4,ENST00000539158.1,ENST00000403834.3,ENST00000368060.3,ENST00000368058.1	chr6	131940966:131941036:131941767:131941869:131943020:131943119,	131941768	131941869	131941854	131941857	Frame_Shift_Del	AGAT	-	p.I170fs
SARC	TCGA-QQ-A5VA-01	MTHFD1	ENST00000545908.1,ENST00000555252.1,ENST00000216605.8	chr14	64882356:64882457:64884605:64884742:64886531:64886643,	64884606	64884742	64884678	64884679	Frame_Shift_Ins	-	G	p.L185fs
SARC	TCGA-DX-A8BV-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508545	195508546	Frame_Shift_Ins	-	G	p.S3303fs
SARC	TCGA-DX-AB2Q-01	MYH15	ENST00000273353.3	chr3	108179146:108179214:108181957:108182090:108183484:108183661,	108181958	108182090	108182019	108182020	Frame_Shift_Ins	-	AATACAG	p.Q622fs
SARC	TCGA-DX-AB30-01	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527470	29527471	Frame_Shift_Ins	-	T	p.A308fs
SARC	TCGA-IW-A3M5-01	OLA1	ENST00000344357.5,ENST00000284719.3,ENST00000428402.2,ENST00000409546.1	chr2	174988322:174988403:175006552:175006728:175087760:175087888,	175006553	175006728	175006589	175006601	Frame_Shift_Del	AGCCACCTTTTCT	-	p.E168fs
SARC	TCGA-UE-A6QT-01	PABPC1L	ENST00000372819.1	chr20	43566742:43566832:43581283:43581345:43586977:43587448,	43581284	43581345	43581294	43581294	Frame_Shift_Del	A	-	p.*150fs
SARC	TCGA-X6-A8C6-01	PDS5A	ENST00000303538.8,ENST00000503396.1	chr4	39900008:39900148:39900396:39900445:39902045:39902127,	39900397	39900445	39900418	39900421	Frame_Shift_Del	CAAA	-	p.F536fs
SARC	TCGA-IS-A3KA-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000449094.1,ENST00000456774.1,ENST00000358536.4	chr3	48462256:48462365:48462636:48462793:48463082:48463209,	48462637	48462793	48462755	48462756	Frame_Shift_Ins	-	GGCCACA	p.G565fs
SARC	TCGA-QQ-A8VG-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64867822	64867823	Frame_Shift_Ins	-	A	p.T226fs
SARC	TCGA-QQ-A5V2-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944165	8944165	Frame_Shift_Del	T	-	p.Q356fs
SARC	TCGA-DX-A8BJ-01	RAP1GDS1	ENST00000380158.4,ENST00000408900.3	chr4	99300309:99300314:99313102:99313231:99325627:99325737,99273663:99273752:99313102:99313231:99325627:99325737,	99313103	99313231	99313196	99313205	Frame_Shift_Del	TGTGTCTTGT	-	p.C203fs
SARC	TCGA-IS-A3KA-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951157	48951157	Frame_Shift_Del	A	-	p.I441fs
SARC	TCGA-X6-A7WC-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961586	135961588	Frame_Shift_Del	TGT	-	p.M1fs
SARC	TCGA-DX-A8BK-01	SEMA4B	ENST00000332496.6,ENST00000379122.3	chr15	90735159:90735258:90744689:90744967:90760670:90760786,90728194:90728313:90744689:90744967:90760670:90760758,	90744690	90744967	90744945	90744945	Frame_Shift_Del	C	-	p.R47fs
SARC	TCGA-IS-A3KA-01	SLC9A8	ENST00000417961.1	chr20	48466115:48466217:48467298:48467381:48471974:48472118,	48467299	48467381	48467301	48467301	Frame_Shift_Del	T	-	p.F182fs
SARC	TCGA-DX-A1L2-01	SP3	ENST00000418194.2,ENST00000310015.6	chr2	174783320:174783513:174819600:174820960:174828488:174828602,	174819601	174820960	174819714	174819715	Frame_Shift_Ins	-	T	p.T509fs
SARC	TCGA-PT-A8TR-01A-11D-A37C-09	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66466876:66467079:66467996:66468753:66469054:66469192,	66467997	66468753	66468674	66468675	Frame_Shift_Ins	-	TT	p.E965fs
SARC	TCGA-DX-A8BG-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775341	23775341	Frame_Shift_Del	A	-	p.K225fs
SARC	TCGA-3B-A9HX-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29821886	29821886	Frame_Shift_Del	A	-	p.S472fs
SARC	TCGA-3B-A9I1-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61103259	61103260	Frame_Shift_Ins	-	A	p.I636fs
SARC	TCGA-3B-A9HT-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133099024	133099024	Frame_Shift_Del	C	-	p.R159fs
SARC	TCGA-LI-A67I-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578213	7578213	Frame_Shift_Del	A	-	p.R213fs
SARC	TCGA-DX-A6B8-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.V72fs
SARC	TCGA-QC-AA9N-01	TSC2	ENST00000353929.4,ENST00000568566.1,ENST00000568454.1,ENST00000350773.4,ENST00000382538.6,ENST00000219476.3,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2114272:2114428:2115519:2115636:2120456:2120579,	2115520	2115636	2115569	2115596	Frame_Shift_Del	TGGCCGCATACTCGGCCTCCTTGGAGGA	-	p.A551fs
SARC	TCGA-DX-A6BE-01	TSC22D4	ENST00000300181.2,ENST00000493217.1	chr7	100071896:100072063:100074899:100075930:100076416:100076792,	100074900	100075930	100075194	100075194	Frame_Shift_Del	G	-	p.T157fs
SARC	TCGA-X2-A95T-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923753	158923753	Frame_Shift_Del	G	-	p.V1022fs
SARC	TCGA-WK-A8XX-01	WDR59	ENST00000536050.1,ENST00000262144.6	chr16	74972148:74972164:74976635:74976724:74982416:74982454,	74976636	74976724	74976691	74976691	Frame_Shift_Del	T	-	p.N160fs
SARC	TCGA-PT-A8TR-01A-11D-A37C-09	XPNPEP3	ENST00000414396.1,ENST00000357137.4,ENST00000544094.1,ENST00000541156.1	chr22	41266051:41266143:41277773:41278181:41282316:41282519,41265002:41265119:41277773:41278181:41282316:41282519,	41277774	41278181	41278171	41278171	Frame_Shift_Del	A	-	p.M195fs
SARC	TCGA-DX-A7EM-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481430	140481430	Frame_Shift_Del	G	-	p.S117fs
SARC	TCGA-DX-A7EU-01	ZNF75D	ENST00000370766.3	chrX	134426206:134426399:134427655:134428184:134429693:134429848,	134427656	134428184	134427799	134427799	Frame_Shift_Del	C	-	p.E90fs
SKCM	TCGA-D3-A2JD-06	MCOLN2	ENST00000463065.1,ENST00000531325.1,ENST00000370608.3,ENST00000284027.5	chr1	85418128:85418213:85422113:85422267:85424211:85424385,	85422114	85422267	85422148	85422149	Frame_Shift_Ins	-	T	p.N177fs
SKCM	TCGA-EE-A2MU-06	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.Q90fs
SKCM	TCGA-EE-A3AG-06	SPRYD7	ENST00000378195.2	chr13	50495613:50495716:50502054:50502221:50505153:50505270,50495613:50495716:50502054:50502221:50510265:50510476,	50502055	50502221	50502187	50502187	Frame_Shift_Del	A	-	p.N87fs
SKCM	TCGA-EE-A2MF-06	HRAS	ENST00000397596.2,ENST00000451590.1,ENST00000493230.1,ENST00000417302.1,ENST00000397594.1,ENST00000311189.7	chr11	533452:533612:533765:533944:534211:534375,	533766	533944	533880	533881	Frame_Shift_Del	GC	-	p.59_59del
SKCM	TCGA-EE-A2MF-06	LRP4	ENST00000534404.1,ENST00000378623.1	chr11	46920937:46921054:46921413:46921527:46921812:46921929,	46921414	46921527	46921521	46921522	Frame_Shift_Ins	-	G	p.R108fs
SKCM	TCGA-EE-A2MF-06	LGALS1	ENST00000425542.1,ENST00000215909.5,ENST00000489315.1	chr22	38073005:38073072:38074489:38074661:38075609:38075647,	38074490	38074661	38074623	38074624	Frame_Shift_Ins	-	A	p.E75fs
SKCM	TCGA-EE-A2MF-06	LGALS1	ENST00000472321.1	chr22	38073005:38073072:38074382:38074661:38075609:38075647,	38074383	38074661	38074623	38074624	Frame_Shift_Ins	-	A	p.E75fs
SKCM	TCGA-EE-A2MN-06	SLC29A1	ENST00000371740.5,ENST00000472176.1,ENST00000313248.7,ENST00000427851.2,ENST00000393844.1,ENST00000371755.3,ENST00000371724.1,ENST00000371708.1,ENST00000393841.1,ENST00000371713.1,ENST00000371731.1	chr6	44198304:44198402:44198547:44198626:44199100:44199198,	44198548	44198626	44198607	44198608	Frame_Shift_Ins	-	T	p.K249fs
SKCM	TCGA-EE-A20C-06	ENKUR	ENST00000483339.2	chr10	25279391:25279538:25284574:25284798:25304788:25304889,	25284575	25284798	25284707	25284707	Frame_Shift_Del	A	-	p.I44X
SKCM	TCGA-EE-A20C-06	SNX6	ENST00000396534.3,ENST00000355110.5,ENST00000556162.1,ENST00000362031.4,ENST00000396526.3	chr14	35031865:35032381:35036891:35036977:35037059:35037219,	35036892	35036977	35036975	35036976	Frame_Shift_Del	GT	-	p.246_246del
SKCM	TCGA-EE-A20C-06	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347832	89347832	Frame_Shift_Del	A	-	p.T1707fs
SKCM	TCGA-FS-A4FB-06	CASC4	ENST00000299957.6,ENST00000345795.2,ENST00000559222.1,ENST00000559037.1	chr15	44620897:44620985:44624185:44624276:44629960:44630079,	44624186	44624276	44624241	44624241	Frame_Shift_Del	A	-	p.I180fs
SKCM	TCGA-ER-A2NH-06	SLCO2B1	ENST00000428359.2,ENST00000527180.1,ENST00000289575.5	chr11	74862257:74862442:74876831:74876994:74883423:74883614,74862257:74862442:74876831:74876994:74880217:74880286,74875007:74875145:74876831:74876994:74880217:74880286,	74876832	74876994	74876960	74876960	Frame_Shift_Del	C	-	p.I116fs
SKCM	TCGA-BF-A1PV-01	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24197299:24197887:24225442:24225592:24225828:24225972,	24225443	24225592	24225559	24225560	Frame_Shift_Ins	-	T	p.I255fs
SKCM	TCGA-FS-A1Z3-06	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855926	100855927	Frame_Shift_Ins	-	G	p.R297fs
SKCM	TCGA-D3-A3MO-06	AFF4	ENST00000265343.5	chr5	132223788:132223852:132224770:132224865:132227855:132228096,	132224771	132224865	132224853	132224853	Frame_Shift_Del	T	-	p.S884fs
SKCM	TCGA-D3-A3MO-06	NUP188	ENST00000372577.2	chr9	131721293:131721413:131730784:131730996:131731678:131731793,	131730785	131730996	131730827	131730828	Frame_Shift_Ins	-	A	p.E210fs
SKCM	TCGA-EB-A1NK-01	PCDH17	ENST00000377918.3	chr13	58209161:58209245:58240601:58240660:58240794:58240967,	58240602	58240660	58240609	58240610	Frame_Shift_Ins	-	T	p.N858fs
SKCM	TCGA-EB-A1NK-01	MRPL33	ENST00000296102.3,ENST00000476552.1	chr2	27995540:27995559:27997290:27997397:28002299:28002406,	27997291	27997397	27997313	27997313	Frame_Shift_Del	A	-	p.V21fs
SKCM	TCGA-D3-A51E-06	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50612194:50612314:50616725:50616948:50619787:50619891,	50616726	50616948	50616844	50616850	Frame_Shift_Del	GTGGACT	-	p.754_756del
SKCM	TCGA-D3-A51E-06	AMZ2	ENST00000359783.4	chr17	66246500:66246611:66247190:66247319:66250544:66250549,	66247191	66247319	66247278	66247290	Frame_Shift_Del	ACTCGTGGAATTT	-	p.182_186del
SKCM	TCGA-D3-A5GR-06	CYP2C19	ENST00000464755.1,ENST00000371321.3	chr10	96541577:96541754:96580252:96580394:96602593:96602781,	96580253	96580394	96580325	96580325	Frame_Shift_Del	G	-	p.A297fs
SKCM	TCGA-D3-A5GR-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971053	21971054	Frame_Shift_Ins	-	C	p.A102fs
SKCM	TCGA-D3-A5GR-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971053	21971054	Frame_Shift_Ins	-	C	p.A102fs
SKCM	TCGA-IH-A3EA-01	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3520868:3520982:3526408:3526537:3527930:3528136,	3526409	3526537	3526472	3526473	Frame_Shift_Ins	-	G	p.G224fs
SKCM	TCGA-ER-A2NE-06	GABRB3	ENST00000541819.2,ENST00000311550.5,ENST00000299267.4	chr15	26828478:26828561:26866460:26866681:27017548:27017616,	26866461	26866681	26866484	26866485	Frame_Shift_Ins	-	TC	p.D61fs
SKCM	TCGA-ER-A2NE-06	DIS3L	ENST00000530537.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66607373:66607553:66610786:66610956:66612908:66613070,	66610787	66610956	66610870	66610870	Frame_Shift_Del	A	-	p.G276fs
SKCM	TCGA-ER-A2NE-06	ANAPC4	ENST00000510092.1,ENST00000505080.1	chr4	25378936:25378966:25379039:25379178:25381995:25382067,	25379040	25379178	25379058	25379058	Frame_Shift_Del	T	-	p.R3fs
SKCM	TCGA-EE-A3JI-06	MADD	ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000311027.5,ENST00000402192.2	chr11	47306496:47306616:47307001:47307141:47307983:47308085,47306496:47306616:47307001:47307141:47310941:47311044,47306491:47306745:47307001:47307141:47307983:47308085,	47307002	47307141	47307065	47307066	Frame_Shift_Del	CT	-	p.782_782del
SKCM	TCGA-EE-A3JI-06	INPPL1	ENST00000298229.2,ENST00000541756.1,ENST00000541544.1	chr11	71936112:71936210:71939233:71939297:71939391:71939542,	71939234	71939297	71939239	71939240	Frame_Shift_Del	AG	-	p.63_63del
SKCM	TCGA-EE-A3JI-06	BIRC2	ENST00000532672.1	chr11	102219328:102219495:102220608:102221480:102221574:102221674,	102220609	102221480	102221293	102221294	Frame_Shift_Ins	-	A	p.A236fs
SKCM	TCGA-EE-A3JI-06	BIRC2	ENST00000227758.2	chr11	102217999:102218107:102219328:102221480:102221574:102221674,	102219329	102221480	102221293	102221294	Frame_Shift_Ins	-	A	p.A236fs
SKCM	TCGA-EE-A3JI-06	BIRC2	ENST00000530675.1	chr11	102217999:102218107:102220731:102221480:102221574:102221674,	102220732	102221480	102221293	102221294	Frame_Shift_Ins	-	A	p.A236fs
SKCM	TCGA-EE-A3JI-06	STX2	ENST00000261653.6,ENST00000392373.2,ENST00000344271.5	chr12	131285959:131286033:131291526:131291635:131293175:131293249,	131291527	131291635	131291609	131291610	Frame_Shift_Del	CA	-	p.127_128del
SKCM	TCGA-EE-A3JI-06	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1	chr16	19498266:19498342:19498514:19498648:19501716:19501890,	19498515	19498648	19498593	19498594	Frame_Shift_Del	CT	-	p.839_840del
SKCM	TCGA-EE-A3JI-06	AP1G1	ENST00000563259.1,ENST00000423132.2,ENST00000565009.1,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000299980.4,ENST00000393512.3	chr16	71805062:71805155:71807123:71807265:71808370:71808495,	71807124	71807265	71807192	71807193	Frame_Shift_Del	TC	-	p.134_134del
SKCM	TCGA-EE-A3JI-06	KIAA0319L	ENST00000325722.3,ENST00000482929.2,ENST00000426982.2,ENST00000478463.2,ENST00000440579.1,ENST00000469892.1	chr1	35944660:35944813:35972212:35972736:36019950:36020120,	35972213	35972736	35972235	35972236	Frame_Shift_Del	AG	-	p.215_215del
SKCM	TCGA-EE-A3JI-06	ABL2	ENST00000392043.3,ENST00000509520.1,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3,ENST00000504324.1	chr1	179090729:179091002:179095511:179095807:179100445:179100616,	179095512	179095807	179095686	179095687	Frame_Shift_Del	GT	-	p.156_157del
SKCM	TCGA-EE-A3JI-06	NTPCR	ENST00000496662.1	chr1	233092097:233092189:233105654:233105864:233113908:233114228,233086385:233086490:233105654:233105864:233113908:233114228,	233105655	233105864	233105685	233105686	Frame_Shift_Del	GT	-	p.108_109del
SKCM	TCGA-EE-A3JI-06	EIF2AK2	ENST00000405334.1,ENST00000233057.4,ENST00000395127.2,ENST00000462861.1	chr2	37334488:37334538:37334616:37334670:37336336:37336438,	37334617	37334670	37334636	37334637	Frame_Shift_Del	TC	-	p.505_505del
SKCM	TCGA-EE-A3JI-06	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365876	37365877	Frame_Shift_Del	AG	-	p.833_833del
SKCM	TCGA-EE-A3JI-06	INTU	ENST00000503626.1,ENST00000503952.1,ENST00000335251.6,ENST00000296461.5	chr4	128584535:128584739:128590190:128590309:128595278:128595368,	128590191	128590309	128590269	128590270	Frame_Shift_Del	TG	-	p.350_351del
SKCM	TCGA-EE-A3JI-06	TGFBI	ENST00000507018.1,ENST00000305126.8,ENST00000442011.2	chr5	135382539:135382704:135382962:135383109:135385127:135385167,	135382963	135383109	135382971	135382972	Frame_Shift_Del	TG	-	p.211_211del
SKCM	TCGA-EE-A3JI-06	KDM3B	ENST00000510866.1,ENST00000314358.5,ENST00000512928.1	chr5	137713408:137713514:137715272:137715397:137717204:137717279,	137715273	137715397	137715279	137715280	Frame_Shift_Del	AC	-	p.196_196del
SKCM	TCGA-EE-A3JI-06	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3	chr6	28887788:28888019:28889668:28889764:28890989:28891690,	28889669	28889764	28889744	28889744	Frame_Shift_Del	G	-	p.D148fs
SKCM	TCGA-EE-A3JI-06	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673453	151673454	Frame_Shift_Del	AG	-	p.1211_1211del
SKCM	TCGA-EE-A3J5-06	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65350324	65350324	Frame_Shift_Del	G	-	p.Q727fs
SKCM	TCGA-EE-A3J5-06	FAR2	ENST00000182377.4	chr12	29302252:29302340:29423344:29423571:29446232:29446408,29376677:29376827:29423344:29423571:29446232:29446408,	29423345	29423571	29423429	29423429	Frame_Shift_Del	C	-	p.T16fs
SKCM	TCGA-EE-A3J5-06	ITGAL	ENST00000564935.1,ENST00000358164.5,ENST00000356798.6	chr16	30500402:30500476:30500574:30500707:30505532:30505684,	30500575	30500707	30500637	30500637	Frame_Shift_Del	G	-	p.K381fs
SKCM	TCGA-EE-A3J5-06	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404473	91404473	Frame_Shift_Del	T	-	p.K813fs
SKCM	TCGA-EE-A3J5-06	PDE10A	ENST00000366882.1,ENST00000354448.4,ENST00000539869.2	chr6	165848724:165848865:165862415:165862465:165863729:165863850,	165862416	165862465	165862417	165862417	Frame_Shift_Del	T	-	p.N132fs
SKCM	TCGA-EE-A20F-06	KIAA1324	ENST00000369939.3,ENST00000527996.1	chr1	109716095:109716201:109716309:109716459:109730798:109730976,109716095:109716201:109716309:109716459:109727666:109727755,	109716310	109716459	109716417	109716418	Frame_Shift_Ins	-	GA	p.G304fs
SKCM	TCGA-EE-A20F-06	ADAM32	ENST00000437682.2,ENST00000519315.1	chr8	39022548:39022715:39027434:39027516:39044427:39044564,39022548:39022715:39027434:39027516:39079128:39079221,	39027435	39027516	39027453	39027453	Frame_Shift_Del	T	-	p.R284fs
SKCM	TCGA-EE-A17Z-06	ASF1B	ENST00000263382.3	chr19	14231309:14231477:14232343:14232520:14236933:14237049,	14232344	14232520	14232424	14232424	Frame_Shift_Del	G	-	p.R108fs
SKCM	TCGA-EE-A17Z-06	ASF1B	ENST00000590835.1	chr19	14231309:14231477:14232343:14232489:14236933:14237049,	14232344	14232489	14232424	14232424	Frame_Shift_Del	G	-	p.R108fs
SKCM	TCGA-EE-A2GH-06	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871151	871151	Frame_Shift_Del	A	-	p.N447fs
SKCM	TCGA-ER-A3ES-06	MYO10	ENST00000515803.1,ENST00000427430.2,ENST00000505695.1,ENST00000274203.9,ENST00000513610.1	chr5	16694479:16694723:16699558:16699682:16701071:16701947,	16699559	16699682	16699620	16699620	Frame_Shift_Del	C	-	p.R1166fs
SKCM	TCGA-DA-A1I2-06	TM9SF3	ENST00000371142.4	chr10	98287169:98287253:98287787:98287934:98290296:98290365,	98287788	98287934	98287894	98287895	Frame_Shift_Ins	-	AT	p.Y479fs
SKCM	TCGA-D3-A1Q4-06	CASC3	ENST00000577605.1,ENST00000264645.7	chr17	38323750:38323865:38324102:38324201:38324455:38324508,	38324103	38324201	38324121	38324121	Frame_Shift_Del	T	-	p.I557fs
SKCM	TCGA-EE-A2ML-06	MYH11	ENST00000576790.2,ENST00000452625.2,ENST00000571505.1,ENST00000300036.5	chr16	15917111:15917268:15931764:15932126:15950797:15950868,	15931765	15932126	15931989	15931989	Frame_Shift_Del	C	-	p.E41fs
SKCM	TCGA-ER-A193-06	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21935342:21935429:21936067:21936139:21936612:21936717,	21936068	21936139	21936093	21936094	Frame_Shift_Ins	-	G	p.L349fs
SKCM	TCGA-D3-A3C6-06	PNN	ENST00000216832.4	chr14	39646615:39646688:39646796:39646891:39647044:39647120,	39646797	39646891	39646845	39646866	Frame_Shift_Del	AGAGACCTTATCCAGGATCAAA	-	p.125_132del
SKCM	TCGA-D3-A2J8-06	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1,ENST00000542215.1	chrX	41203282:41203381:41203491:41203652:41204432:41204577,	41203492	41203652	41203517	41203523	Frame_Shift_Del	CTTGCGT	-	p.297_299del
SKCM	TCGA-EE-A2GM-06	COL16A1	ENST00000373668.3,ENST00000373672.3	chr1	32158692:32158755:32159744:32159771:32160786:32160822,	32159745	32159771	32159756	32159757	Frame_Shift_Ins	-	TG	p.S333fs
SKCM	TCGA-D3-A5GS-06	YY1	ENST00000554804.1	chr14	100728640:100728803:100741034:100741095:100742826:100742915,100728640:100728803:100741034:100741095:100743754:100744130,	100741035	100741095	100741052	100741052	Frame_Shift_Del	T	-	p.I287fs
SKCM	TCGA-D3-A5GS-06	CBFA2T2	ENST00000397798.2,ENST00000492345.1,ENST00000346541.3,ENST00000344201.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32198903:32199141:32207322:32207412:32210920:32211102,	32207323	32207412	32207397	32207397	Frame_Shift_Del	G	-	p.V145fs
SKCM	TCGA-GF-A6C9-06	B3GAT1	ENST00000312527.4	chr11	134253892:134254082:134257441:134257834:134281700:134281812,	134257442	134257834	134257463	134257464	Frame_Shift_Ins	-	T	p.P31fs
SKCM	TCGA-GF-A6C9-06	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672094	77672094	Frame_Shift_Del	A	-	p.A3066fs
SKCM	TCGA-GF-A6C9-06	GBP3	ENST00000235878.5,ENST00000370481.4,ENST00000493594.2	chr1	89477510:89477710:89478867:89479110:89479765:89479962,	89478868	89479110	89478895	89478895	Frame_Shift_Del	A	-	p.S281X
SKCM	TCGA-GF-A6C9-06	TFAP2A	ENST00000497266.1,ENST00000482890.1,ENST00000488193.1,ENST00000379608.3,ENST00000379604.2,ENST00000489805.1,ENST00000379613.3,ENST00000319516.4	chr6	10398920:10398938:10400680:10400822:10402724:10402843,	10400681	10400822	10400698	10400699	Frame_Shift_Ins	-	T	p.N330fs
SKCM	TCGA-FS-A1ZC-06	PIPOX	ENST00000484308.1	chr17	27371876:27372025:27379937:27380151:27380430:27380464,27373657:27373865:27379937:27380151:27380430:27380464,	27379938	27380151	27380135	27380135	Frame_Shift_Del	C	-	p.A154fs
SKCM	TCGA-EE-A17X-06	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682332	108682333	Frame_Shift_Del	TT	-	p.910_910del
SKCM	TCGA-D3-A3CE-06	CDH19	ENST00000579658.1,ENST00000262150.2	chr18	64172281:64172539:64197081:64197203:64202222:64202344,64178804:64178922:64197081:64197203:64202222:64202344,	64197082	64197203	64197127	64197128	Frame_Shift_Ins	-	G	p.S471fs
SKCM	TCGA-EE-A29N-06	PAPOLA	ENST00000554130.1	chr14	96991646:96991728:96993766:96993876:96994289:96994339,96987399:96987409:96993766:96993876:96994289:96994339,	96993767	96993876	96993806	96993806	Frame_Shift_Del	T	-	p.V124fs
SKCM	TCGA-FR-A3YN-06	NARF	ENST00000577410.1,ENST00000309794.11,ENST00000577812.1,ENST00000345415.7,ENST00000390006.4,ENST00000374611.5	chr17	80430439:80430574:80436675:80436794:80438957:80438969,	80436676	80436794	80436763	80436763	Frame_Shift_Del	C	-	p.S144fs
SKCM	TCGA-FR-A3YN-06	CCDC125	ENST00000396499.1,ENST00000396496.2	chr5	68606944:68607031:68609811:68609873:68616063:68616172,	68609812	68609873	68609835	68609847	Frame_Shift_Del	GCCTTAATTCTTC	-	p.111_115del
SKCM	TCGA-FR-A3YN-06	CCDC125	ENST00000511257.1,ENST00000383374.2	chr5	68606944:68607031:68609811:68609870:68616063:68616172,	68609812	68609870	68609835	68609847	Frame_Shift_Del	GCCTTAATTCTTC	-	p.111_115del
SKCM	TCGA-D3-A51G-06	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64112135	64112136	Frame_Shift_Ins	-	T	p.V708fs
SKCM	TCGA-D3-A51G-06	NBEAL1	ENST00000414576.2,ENST00000434469.1,ENST00000449802.1	chr2	204073359:204073476:204073883:204074045:204075680:204075829,	204073884	204074045	204073989	204073989	Frame_Shift_Del	T	-	p.I2547fs
SKCM	TCGA-EE-A2GN-06	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108099904:108100050:108106396:108106561:108114679:108114811,	108106397	108106561	108106555	108106556	Frame_Shift_Ins	-	GGTTA	p.W164fs
SKCM	TCGA-EE-A2GN-06	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357594	50357595	Frame_Shift_Ins	-	A	p.L449fs
SKCM	TCGA-DA-A1I0-06	ANXA7	ENST00000372919.4,ENST00000492380.1,ENST00000372921.5,ENST00000535178.1	chr10	75143018:75143103:75143334:75143448:75147446:75147535,	75143335	75143448	75143420	75143420	Frame_Shift_Del	A	-	p.L243fs
SKCM	TCGA-EE-A2GJ-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578267	7578267	Frame_Shift_Del	A	-	p.I63fs
SKCM	TCGA-ER-A3EV-06	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943798:12943972:12945995:12946213:12947760:12947979,	12945996	12946213	12946210	12946211	Frame_Shift_Ins	-	CA	p.S923_E924delinsX
SKCM	TCGA-D9-A3Z1-06	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922632	150922633	Frame_Shift_Ins	-	T	p.V2686fs
SKCM	TCGA-DA-A1I5-06	ERBB3	ENST00000415288.2,ENST00000450146.2,ENST00000553131.1,ENST00000551085.1,ENST00000267101.3	chr12	56490531:56490630:56490828:56491014:56491568:56491724,	56490829	56491014	56490961	56490962	Frame_Shift_Ins	-	G	p.R803fs
SKCM	TCGA-EE-A180-06	TSEN15	ENST00000462677.2	chr1	184023861:184023997:184041290:184041432:184041960:184042114,184039749:184039866:184041290:184041432:184041960:184042114,	184041291	184041432	184041309	184041310	Frame_Shift_Del	GG	-	p.124_124del
SKCM	TCGA-EE-A180-06	TSEN15	ENST00000533373.1	chr1	184023861:184023997:184041290:184041328:184041960:184042114,	184041291	184041328	184041309	184041310	Frame_Shift_Del	GG	-	p.124_124del
SKCM	TCGA-FS-A1ZW-06	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24197299:24197887:24225442:24225592:24225828:24225972,	24225443	24225592	24225549	24225550	Frame_Shift_Ins	-	A	p.I251fs
SKCM	TCGA-BF-A5EQ-01	ADD1	ENST00000398129.1,ENST00000513328.2,ENST00000355842.3,ENST00000398123.2,ENST00000264758.7,ENST00000514940.1,ENST00000446856.1,ENST00000503169.1,ENST00000398125.1,ENST00000503455.2	chr4	2900159:2900258:2900985:2901162:2906490:2906742,	2900986	2901162	2901108	2901108	Frame_Shift_Del	G	-	p.K369fs
SKCM	TCGA-EB-A4IS-01	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50616159	50616159	Frame_Shift_Del	T	-	p.N92fs
SKCM	TCGA-EB-A41A-01	CHD4	ENST00000309577.6,ENST00000544484.1,ENST00000357008.2,ENST00000544040.1,ENST00000545942.1	chr12	6709700:6709835:6710091:6710219:6710454:6710696,	6710092	6710219	6710107	6710108	Frame_Shift_Ins	-	T	p.K304fs
SKCM	TCGA-EE-A2A2-06	PATL1	ENST00000300146.9	chr11	59422995:59423213:59423428:59423518:59423971:59424073,	59423429	59423518	59423460	59423460	Frame_Shift_Del	A	-	p.L261fs
SKCM	TCGA-EE-A2A2-06	SLC27A1	ENST00000442725.1,ENST00000600297.1,ENST00000598424.1,ENST00000252595.7,ENST00000599380.1	chr19	17598268:17598338:17599656:17599748:17599816:17599874,	17599657	17599748	17599665	17599683	Frame_Shift_Del	GCATGGCAGCCTTCGGCCA	-	p.268_274del
SKCM	TCGA-EE-A2A2-06	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384901	124384902	Frame_Shift_Ins	-	A	p.K116_K117delinsX
SKCM	TCGA-EB-A44R-06	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37209935	37209936	Frame_Shift_Ins	-	A	p.H72fs
SKCM	TCGA-FR-A3R1-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921001	57921002	Frame_Shift_Ins	-	C	p.T691fs
SKCM	TCGA-FR-A3R1-01	PLBD2	ENST00000280800.3,ENST00000545182.2	chr12	113806920:113807014:113810453:113810612:113812278:113812379,	113810454	113810612	113810537	113810537	Frame_Shift_Del	G	-	p.K156fs
SKCM	TCGA-EE-A2GL-06	SEC24C	ENST00000465076.1,ENST00000345254.4	chr10	75506387:75506474:75506562:75506762:75510865:75511001,75504126:75504195:75506562:75506762:75519379:75519552,75504157:75504195:75506562:75506762:75510865:75511001,	75506563	75506762	75506612	75506612	Frame_Shift_Del	C	-	p.V7fs
SKCM	TCGA-BF-A5EO-01	SGK1	ENST00000525877.1,ENST00000528577.1,ENST00000477460.2,ENST00000367858.5,ENST00000367857.5,ENST00000367855.3,ENST00000237305.7,ENST00000413996.3,ENST00000475719.2,ENST00000489458.2	chr6	134492788:134492870:134493330:134493454:134493799:134493877,	134493331	134493454	134493445	134493445	Frame_Shift_Del	T	-	p.P320fs
SKCM	TCGA-EE-A184-06	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77523967:77524063:77536685:77536760:77563343:77563419,	77536686	77536760	77536740	77536741	Frame_Shift_Ins	-	T	p.N75fs
SKCM	TCGA-EE-A29V-06	FAM117B	ENST00000303116.6,ENST00000392238.2	chr2	203590972:203591086:203620260:203620404:203621935:203622161,	203620261	203620404	203620370	203620370	Frame_Shift_Del	T	-	p.I357fs
SKCM	TCGA-EE-A29V-06	PBX3	ENST00000373492.2,ENST00000373483.2,ENST00000373482.2	chr9	128510828:128510902:128691933:128692124:128697750:128697810,	128691934	128692124	128692021	128692022	Frame_Shift_Del	AT	-	p.126_127del
SKCM	TCGA-EE-A2GR-06	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005416	47005416	Frame_Shift_Del	G	-	p.G70fs
SKCM	TCGA-EE-A2GR-06	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005416	47005416	Frame_Shift_Del	G	-	p.G70fs
SKCM	TCGA-EE-A2GR-06	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110085890	110085905	Frame_Shift_Del	CTGCCTGGTGGACCTG	-	p.82_87del
SKCM	TCGA-BF-A1Q0-01	FN1	ENST00000443816.1,ENST00000432072.2,ENST00000456923.1,ENST00000356005.4,ENST00000357867.4,ENST00000421182.1	chr2	216245533:216245803:216246934:216247048:216248050:216248206,216243927:216244040:216246934:216247048:216248050:216248206,	216246935	216247048	216246963	216246964	Frame_Shift_Ins	-	CT	p.S1621fs
SKCM	TCGA-D3-A3MR-06	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060475	56060476	Frame_Shift_Ins	-	C	p.P105fs
SKCM	TCGA-GN-A266-06	ACADVL	ENST00000356839.5,ENST00000543245.2,ENST00000322910.5,ENST00000350303.5,ENST00000583858.1	chr17	7126078:7126184:7126451:7126556:7126962:7127049,	7126452	7126556	7126487	7126488	Frame_Shift_Ins	-	A	p.E371fs
SKCM	TCGA-GN-A266-06	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165513	50165513	Frame_Shift_Del	C	-	p.G79fs
SKCM	TCGA-GN-A266-06	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165513	50165513	Frame_Shift_Del	C	-	p.G79fs
SKCM	TCGA-GN-A266-06	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196697481:196697652:196705953:196706136:196706604:196706790,	196705954	196706136	196706058	196706059	Frame_Shift_Ins	-	A	p.Q840fs
SKCM	TCGA-EB-A3XC-01	MCOLN2	ENST00000463065.1,ENST00000370608.3,ENST00000284027.5	chr1	85395240:85395362:85397044:85397251:85403437:85403560,	85397045	85397251	85397097	85397122	Frame_Shift_Del	ATATATATAAAAAGGCTGATGAAGGA	-	p.489_497del
SKCM	TCGA-EE-A2GC-06	LLGL2	ENST00000375227.4,ENST00000392550.3,ENST00000167462.5	chr17	73521869:73521906:73539477:73539582:73552126:73552170,	73539478	73539582	73539582	73539583	Frame_Shift_Ins	-	GT	p.K25fs
SKCM	TCGA-EE-A2GC-06	DLC1	ENST00000276297.4,ENST00000503161.2,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12960298:12960362:12968250:12968332:12973094:12973166,	12968251	12968332	12968281	12968281	Frame_Shift_Del	A	-	p.L54fs
SKCM	TCGA-GN-A26A-06	CLK2	ENST00000368361.4,ENST00000355560.4,ENST00000497188.1,ENST00000361168.5,ENST00000476983.1,ENST00000536801.1	chr1	155235650:155235745:155236519:155236686:155237800:155237917,	155236520	155236686	155236673	155236674	Frame_Shift_Ins	-	C	p.M228fs
SKCM	TCGA-D3-A2JF-06	ARHGAP17	ENST00000303665.5	chr16	24942104:24942725:24946790:24946960:24950684:24950918,24942104:24942725:24946790:24946960:24953307:24953464,	24946791	24946960	24946954	24946954	Frame_Shift_Del	G	-	p.K500fs
SKCM	TCGA-D3-A2JF-06	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000379188.3	chrX	24190872:24190917:24197299:24197887:24225442:24225592,	24197300	24197887	24197828	24197828	Frame_Shift_Del	T	-	p.I196fs
SKCM	TCGA-D9-A1JX-06	CPEB2	ENST00000345451.3,ENST00000382395.3	chr4	15008990:15009210:15018811:15018902:15034784:15034835,	15018812	15018902	15018896	15018897	Frame_Shift_Ins	-	T	p.L707fs
SKCM	TCGA-ER-A19F-06	HRAS	ENST00000493230.1,ENST00000417302.1,ENST00000462734.1,ENST00000397594.1	chr11	532728:532755:533276:533358:533452:533595,	533277	533358	533312	533321	Frame_Shift_Del	GGGTCCCAGA	-	p.163_166del
SKCM	TCGA-DA-A3F8-06	NDRG1	ENST00000518010.1,ENST00000522377.1,ENST00000517599.1,ENST00000537882.1,ENST00000354944.5	chr8	134292474:134292510:134296491:134296572:134309376:134309480,	134296492	134296572	134296497	134296498	Frame_Shift_Del	CT	-	p.20_20del
SKCM	TCGA-EE-A2GI-06	RPL5	ENST00000370321.3,ENST00000315741.5	chr1	93300335:93300470:93301746:93301949:93303012:93303026,	93301747	93301949	93301759	93301759	Frame_Shift_Del	T	-	p.R112fs
SKCM	TCGA-EE-A2GI-06	VCAM1	ENST00000370119.4,ENST00000347652.2,ENST00000294728.2	chr1	101196753:101197074:101197973:101198240:101200057:101200324,	101197974	101198240	101198228	101198228	Frame_Shift_Del	T	-	p.E501fs
SKCM	TCGA-EE-A2GI-06	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97822735	97822736	Frame_Shift_Ins	-	T	p.P986fs
SKCM	TCGA-D3-A3ML-06	PHACTR3	ENST00000359926.3,ENST00000355648.4,ENST00000371015.1,ENST00000395636.2,ENST00000541461.1	chr20	58330236:58330419:58342240:58342450:58348333:58348508,	58342241	58342450	58342249	58342249	Frame_Shift_Del	C	-	p.M142fs
SKCM	TCGA-D3-A5GN-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971122	21971123	Frame_Shift_Ins	-	T	p.T79fs
SKCM	TCGA-D3-A5GN-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971122	21971123	Frame_Shift_Ins	-	T	p.T79fs
SKCM	TCGA-EE-A2GE-06	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1,ENST00000400866.2	chrX	76872080:76872198:76874273:76874449:76875862:76876000,	76874274	76874449	76874353	76874354	Frame_Shift_Ins	-	CACA	p.A1752fs
SKCM	TCGA-EE-A29D-06	RASSF8	ENST00000542865.1,ENST00000541490.1,ENST00000381352.3,ENST00000405154.2,ENST00000282884.9	chr12	26208211:26208379:26217430:26218320:26220501:26220646,	26217431	26218320	26218119	26218119	Frame_Shift_Del	G	-	p.Q264fs
SKCM	TCGA-EE-A29D-06	AKT2	ENST00000311278.6	chr19	40741169:40741257:40741796:40742011:40742163:40742292,40741169:40741257:40741796:40742011:40743875:40743973,	40741797	40742011	40741920	40741920	Frame_Shift_Del	T	-	p.Y351X
SKCM	TCGA-EE-A29D-06	AKT2	ENST00000496089.2	chr19	40741169:40741257:40741796:40742292:40743875:40743973,	40741797	40742292	40741920	40741920	Frame_Shift_Del	T	-	p.Y351X
SKCM	TCGA-EE-A29D-06	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859263	48859264	Frame_Shift_Ins	-	A	p.R199fs
SKCM	TCGA-D3-A1QA-06	PDXDC1	ENST00000563679.1,ENST00000450288.2,ENST00000535621.2,ENST00000567306.1,ENST00000569715.1,ENST00000447912.2,ENST00000325823.7,ENST00000570001.1,ENST00000455313.2,ENST00000396410.4	chr16	15109985:15110070:15110976:15111025:15111177:15111244,	15110977	15111025	15111005	15111006	Frame_Shift_Del	TA	-	p.280_281del
SKCM	TCGA-D3-A1QA-06	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461727:10461838:10463109:10463227:10463601:10463750,	10463110	10463227	10463113	10463113	Frame_Shift_Del	G	-	p.T1106fs
SKCM	TCGA-D3-A1Q5-06	TMEM14B	ENST00000379542.5,ENST00000467317.1,ENST00000491103.1,ENST00000475942.1	chr6	10749854:10749931:10751365:10751467:10770309:10770437,10749854:10749931:10751365:10751467:10755374:10755465,	10751366	10751467	10751386	10751404	Frame_Shift_Del	GCAGGGCTGCTCTTCGGCA	-	p.40_46del
SKCM	TCGA-D3-A2J7-06	PSMD10	ENST00000361815.5,ENST00000217958.3	chrX	107330274:107331082:107331182:107331329:107331981:107332080,	107331183	107331329	107331269	107331269	Frame_Shift_Del	G	-	p.L92fs
SKCM	TCGA-ER-A19D-06	GSDMC	ENST00000276708.4	chr8	130788347:130788531:130789613:130789837:130798256:130799134,	130789614	130789837	130789808	130789808	Frame_Shift_Del	C	-	p.S9fs
SKCM	TCGA-EE-A29M-06	DHX37	ENST00000544745.1,ENST00000308736.2,ENST00000539298.1	chr12	125438632:125438757:125441236:125441425:125441574:125441681,	125441237	125441425	125441343	125441343	Frame_Shift_Del	G	-	p.R783fs
SKCM	TCGA-EE-A29M-06	CPSF2	ENST00000298875.4,ENST00000555244.1	chr14	92624002:92624228:92625326:92625626:92627455:92627590,	92625327	92625626	92625548	92625549	Frame_Shift_Del	TC	-	p.681_681del
SKCM	TCGA-EE-A29M-06	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50717283:50717440:50718058:50718205:50718433:50718500,	50718059	50718205	50718203	50718223	Frame_Shift_Del	GTCCTGGAGTAACACGGAGGG	-	p.1415_1416del
SKCM	TCGA-D3-A3C3-06	BROX	ENST00000537020.1,ENST00000539697.1,ENST00000340934.5	chr1	222902100:222902170:222902961:222903043:222903368:222903519,	222902962	222903043	222902985	222902986	Frame_Shift_Del	TT	-	p.260_260del
SKCM	TCGA-EE-A29S-06	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.A101fs
SKCM	TCGA-FW-A3R5-06	CCDC38	ENST00000344280.3	chr12	96275262:96275332:96282235:96282284:96284609:96284708,	96282236	96282284	96282260	96282260	Frame_Shift_Del	C	-	p.R299fs
SKCM	TCGA-FW-A3R5-06	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904848	100904852	Frame_Shift_Del	TGAGC	-	p.134_135del
SKCM	TCGA-FS-A4F5-06	NR4A1	ENST00000394825.1	chr12	52435593:52435713:52448110:52448988:52449813:52449935,52445246:52445352:52448110:52448988:52449813:52449935,	52448111	52448988	52448454	52448454	Frame_Shift_Del	C	-	p.G114fs
SKCM	TCGA-FS-A4F5-06	ATRIP	ENST00000346691.4,ENST00000454733.1,ENST00000320211.3,ENST00000357105.6,ENST00000424906.1,ENST00000412052.1	chr3	48500761:48500853:48501185:48501315:48501508:48501561,	48501186	48501315	48501288	48501289	Frame_Shift_Del	CC	-	p.250_250del
SKCM	TCGA-D3-A2JO-06	MFSD12	ENST00000398558.4	chr19	3538647:3538754:3542773:3542975:3544806:3544937,	3542774	3542975	3542865	3542866	Frame_Shift_Ins	-	T	p.A511fs
SKCM	TCGA-D3-A2JO-06	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150677	128150680	Frame_Shift_Del	TCTT	-	p.217_218del
SKCM	TCGA-D3-A2JO-06	AGAP3	ENST00000463381.1	chr7	150825682:150825771:150831486:150831655:150838984:150839139,	150831487	150831655	150831524	150831524	Frame_Shift_Del	T	-	p.L455fs
SKCM	TCGA-EB-A41B-01	PLG	ENST00000308192.9	chr6	161137676:161137795:161139325:161139488:161139724:161139870,	161139326	161139488	161139418	161139419	Frame_Shift_Del	CA	-	p.293_294del
SKCM	TCGA-EE-A183-06	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349891	89349895	Frame_Shift_Del	TTCCT	-	p.1019_1020del
SKCM	TCGA-EE-A181-06	BRDT	ENST00000427104.1	chr1	92415861:92416031:92428274:92428503:92430183:92430279,	92428275	92428503	92428378	92428378	Frame_Shift_Del	A	-	p.T22fs
SKCM	TCGA-EE-A181-06	UBR3	ENST00000430321.1	chr2	170917827:170917953:170929913:170930117:170936323:170936533,	170929914	170930117	170929938	170929940	Frame_Shift_Del	GAA	-	p.1674_1674del
SKCM	TCGA-EE-A181-06	UBR3	ENST00000392631.1,ENST00000474426.1,ENST00000272793.5,ENST00000439681.1,ENST00000392632.2,ENST00000418381.1,ENST00000444475.1	chr2	170917827:170917953:170929937:170930117:170936323:170936533,	170929938	170930117	170929938	170929940	Frame_Shift_Del	GAA	-	p.1674_1674del
SKCM	TCGA-EE-A29C-06	GDPD3	ENST00000566613.1	chr16	30116164:30116330:30119693:30119753:30122708:30122711,	30119694	30119753	30119700	30119700	Frame_Shift_Del	G	-	p.S254fs
SKCM	TCGA-D3-A5GU-06	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107965538:107965714:107966256:107966418:107968362:107968481,	107966257	107966418	107966294	107966300	Frame_Shift_Del	AGGTAAC	-	p.594_596del
SKCM	TCGA-ER-A19G-06	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244539	41244540	Frame_Shift_Del	AA	-	p.1003_1004del
SKCM	TCGA-FS-A4FC-06	KDSR	ENST00000585750.1	chr18	61011642:61011726:61018120:61018310:61022436:61022532,	61018121	61018310	61018162	61018163	Frame_Shift_Ins	-	G	p.K190fs
SKCM	TCGA-FS-A4FC-06	KDSR	ENST00000406396.3,ENST00000591902.1	chr18	61011642:61011726:61018120:61018312:61022436:61022532,	61018121	61018312	61018162	61018163	Frame_Shift_Ins	-	G	p.K190fs
SKCM	TCGA-FS-A1YW-06	CYP4A22	ENST00000371890.3,ENST00000485117.1,ENST00000294337.3,ENST00000490948.1,ENST00000371891.3	chr1	47610508:47610642:47611537:47611602:47611748:47611825,	47611538	47611602	47611598	47611601	Frame_Shift_Del	TAGA	-	p.428_429del
SKCM	TCGA-FS-A1YW-06	PSCA	ENST00000301258.4	chr8	143751738:143751986:143762744:143762852:143763338:143763717,143761874:143761981:143762744:143762852:143763338:143763525,	143762745	143762852	143762824	143762824	Frame_Shift_Del	G	-	p.L35fs
SKCM	TCGA-FS-A4F9-06	SPINT1	ENST00000344051.4,ENST00000562057.1,ENST00000431806.1	chr15	41145985:41146079:41146594:41146720:41146836:41146887,41146013:41146127:41146594:41146720:41146836:41146887,41146257:41146284:41146594:41146720:41146836:41146887,	41146595	41146720	41146652	41146653	Frame_Shift_Del	AC	-	p.333_333del
SKCM	TCGA-FS-A4F9-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577112	7577113	Frame_Shift_Del	CA	-	p.144_144del
SKCM	TCGA-FS-A4F9-06	ITGA10	ENST00000369304.3	chr1	145528253:145528345:145528569:145528684:145530266:145530394,	145528570	145528684	145528605	145528606	Frame_Shift_Del	CT	-	p.134_134del
SKCM	TCGA-FS-A4F9-06	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62595423:62595570:62595672:62595744:62595842:62596069,	62595673	62595744	62595733	62595734	Frame_Shift_Del	TC	-	p.425_425del
SKCM	TCGA-FS-A4F9-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121702	12121703	Frame_Shift_Del	AG	-	p.558_558del
SKCM	TCGA-FS-A4F9-06	CYB5R4	ENST00000369681.5	chr6	84624134:84624167:84627723:84627784:84629115:84629173,	84627724	84627784	84627749	84627750	Frame_Shift_Del	AG	-	p.157_157del
SKCM	TCGA-FS-A4F9-06	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943323:12943440:12943798:12943972:12945995:12946213,	12943799	12943972	12943882	12943882	Frame_Shift_Del	A	-	p.N1025fs
SKCM	TCGA-EE-A2M6-06	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197074279	197074279	Frame_Shift_Del	G	-	p.L1368fs
SKCM	TCGA-EE-A2MI-06	ARIH2	ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000452385.1	chr3	49005966:49006088:49008027:49008137:49011131:49011249,	49008028	49008137	49008031	49008031	Frame_Shift_Del	C	-	p.S221fs
SKCM	TCGA-EE-A2MI-06	ARIH2	ENST00000465217.1	chr3	49005966:49006088:49008027:49008274:49011131:49011249,	49008028	49008274	49008031	49008031	Frame_Shift_Del	C	-	p.S221fs
SKCM	TCGA-EE-A2MI-06	SRP72	ENST00000510663.1,ENST00000342756.5	chr4	57344757:57344815:57350901:57351030:57352490:57352563,57349304:57349436:57350901:57351030:57352490:57352563,	57350902	57351030	57350909	57350909	Frame_Shift_Del	A	-	p.Q261fs
SKCM	TCGA-EE-A2MS-06	ERLEC1	ENST00000378239.5,ENST00000185150.4	chr2	54041679:54041757:54041996:54042072:54045034:54045357,	54041997	54042072	54042070	54042070	Frame_Shift_Del	G	-	p.L433fs
SKCM	TCGA-EE-A2MS-06	DPP10	ENST00000393147.2	chr2	115919810:115919849:116066814:116066929:116101392:116101488,115919178:115919605:116066814:116066929:116101392:116101488,	116066815	116066929	116066879	116066879	Frame_Shift_Del	T	-	p.I46fs
SKCM	TCGA-EE-A2MS-06	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47883106:47883227:47884595:47884745:47887189:47887342,	47884596	47884745	47884677	47884677	Frame_Shift_Del	G	-	p.F251fs
SKCM	TCGA-EE-A2MS-06	RNF175	ENST00000513656.1	chr4	154644551:154644610:154649358:154649513:154666820:154666879,154644551:154644610:154649358:154649513:154680948:154681025,154644551:154644610:154649358:154649513:154669796:154669901,154644551:154644610:154649358:154649513:154672589:154672599,	154649359	154649513	154649461	154649461	Frame_Shift_Del	A	-	p.L100fs
SKCM	TCGA-EE-A3AC-06	ARHGAP15	ENST00000295095.6	chr2	144381701:144381836:144460987:144461093:144525557:144525917,	144460988	144461093	144461039	144461040	Frame_Shift_Ins	-	ACTC	p.K397fs
SKCM	TCGA-EE-A3AC-06	CNTRL	ENST00000373865.2,ENST00000373855.1,ENST00000238341.5	chr9	123858699:123858841:123860663:123860850:123870079:123870273,	123860664	123860850	123860722	123860722	Frame_Shift_Del	A	-	p.E227fs
SKCM	TCGA-EE-A2GP-06	MBNL1	ENST00000324210.5,ENST00000282486.6,ENST00000282488.7,ENST00000355460.2	chr3	151986751:151986881:152017193:152018156:152132729:152132897,	152017194	152018156	152018127	152018128	Frame_Shift_Ins	-	GAGT	p.R49fs
SKCM	TCGA-EE-A3AB-06	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405953	157405954	Frame_Shift_Ins	-	G	p.P719fs
SKCM	TCGA-EE-A3AH-06	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690811	89690812	Frame_Shift_Del	AA	-	p.73_73del
SKCM	TCGA-EE-A3AH-06	SYNE3	ENST00000555759.1,ENST00000557275.1,ENST00000334258.5,ENST00000553340.1	chr14	95921713:95922061:95923513:95923675:95932267:95932577,	95923514	95923675	95923537	95923537	Frame_Shift_Del	T	-	p.T256fs
SKCM	TCGA-EE-A3AH-06	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27751863	27751863	Frame_Shift_Del	G	-	p.P748fs
SKCM	TCGA-EE-A3AH-06	CENPL	ENST00000356198.2	chr1	173769549:173769657:173772100:173772643:173776404:173776448,173769549:173769657:173772100:173772643:173775576:173775714,	173772101	173772643	173772132	173772133	Frame_Shift_Del	AC	-	p.357_357del
SKCM	TCGA-EE-A3AH-06	MCPH1	ENST00000344683.5	chr8	6299587:6299677:6301913:6303068:6312663:6312773,	6301914	6303068	6302515	6302516	Frame_Shift_Ins	-	T	p.R376fs
SKCM	TCGA-FS-A1ZA-06	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087839	32087851	Frame_Shift_Del	AGCTTCATCAAGG	-	p.1428_1432del
SKCM	TCGA-BF-A3DL-01	LCN10	ENST00000527229.1	chr9	139634401:139634500:139635703:139635813:139636332:139636472,	139635704	139635813	139635711	139635712	Frame_Shift_Ins	-	T	p.Q120fs
SKCM	TCGA-EE-A2M5-06	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203954	135203958	Frame_Shift_Del	CACGG	-	p.1010_1011del
SKCM	TCGA-FS-A4FD-06	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532524	3532525	Frame_Shift_Ins	-	G	p.S373fs
SKCM	TCGA-FS-A4F4-06	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527570	29527571	Frame_Shift_Ins	-	T	p.S340fs
SKCM	TCGA-D3-A5GO-06	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153590609:153590700:153590785:153590946:153591028:153591152,	153590786	153590946	153590823	153590824	Frame_Shift_Ins	-	C	p.A843fs
SKCM	TCGA-RP-A690-06	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472300	77472300	Frame_Shift_Del	T	-	p.T657fs
SKCM	TCGA-EB-A430-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257784	6257785	Frame_Shift_Ins	-	T	p.K15fs
SKCM	TCGA-EB-A430-01	FAXC	ENST00000480148.1	chr6	99781226:99781423:99790773:99790909:99796982:99797104,	99790774	99790909	99790802	99790803	Frame_Shift_Ins	-	A	p.Y125fs
SKCM	TCGA-DA-A1HV-06	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371501.4	chr10	95082874:95082930:95083026:95083115:95085582:95085722,	95083027	95083115	95083038	95083038	Frame_Shift_Del	C	-	p.K1784fs
SKCM	TCGA-DA-A1HV-06	ARID4A	ENST00000355431.3	chr14	58832741:58832948:58833600:58833747:58838603:58838678,	58833601	58833747	58833673	58833673	Frame_Shift_Del	A	-	p.Y1199fs
SKCM	TCGA-EE-A3AD-06	GRB2	ENST00000316615.5,ENST00000316804.5	chr17	73328780:73328878:73389631:73389846:73401569:73401734,	73389632	73389846	73389691	73389691	Frame_Shift_Del	A	-	p.Y7fs
SKCM	TCGA-EE-A3AD-06	TMPRSS11B	ENST00000332644.5	chr4	69094459:69094602:69094974:69095234:69096920:69097098,	69094975	69095234	69095137	69095137	Frame_Shift_Del	A	-	p.Y262fs
SKCM	TCGA-EE-A3J7-06	COL17A1	ENST00000353479.5	chr10	105799730:105799757:105800108:105800168:105800822:105800876,	105800109	105800168	105800146	105800147	Frame_Shift_Ins	-	G	p.P908fs
SKCM	TCGA-EE-A3J7-06	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389836	11389837	Frame_Shift_Ins	-	A	p.W138fs
SKCM	TCGA-EE-A2MT-06	EFTUD2	ENST00000589769.1,ENST00000590977.1	chr17	42929077:42929185:42929776:42929930:42930663:42930758,42929077:42929185:42929776:42929930:42930884:42931003,	42929777	42929930	42929896	42929896	Frame_Shift_Del	A	-	p.S856fs
SKCM	TCGA-EE-A2MT-06	CACTIN	ENST00000585942.1,ENST00000248420.5,ENST00000221899.3	chr19	3620704:3620800:3623685:3624160:3626593:3626813,	3623686	3624160	3624103	3624104	Frame_Shift_Ins	-	G	p.P75fs
SKCM	TCGA-EE-A2MT-06	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2,ENST00000529046.1	chr1	115276389:115276478:115276609:115276738:115277062:115277144,	115276610	115276738	115276684	115276687	Frame_Shift_Del	AGTG	-	p.181_182del
SKCM	TCGA-EE-A2MT-06	NR1I3	ENST00000367982.4,ENST00000515621.1,ENST00000367983.4,ENST00000512372.1,ENST00000428574.2,ENST00000504010.1,ENST00000367980.2,ENST00000505005.1,ENST00000367981.3,ENST00000412844.2,ENST00000508740.1,ENST00000515452.1,ENST00000442691.2,ENST00000367979.2,ENST00000506209.1,ENST00000511676.1,ENST00000506018.1,ENST00000367984.4,ENST00000367985.3,ENST00000437437.2	chr1	161202596:161202736:161202958:161203128:161205636:161205767,	161202959	161203128	161203046	161203058	Frame_Shift_Del	ACTCAGTTGCACA	-	p.104_108del
SKCM	TCGA-EE-A2MT-06	MPZL1	ENST00000465787.1,ENST00000367853.3,ENST00000359523.2,ENST00000474859.1,ENST00000474729.1	chr1	167734825:167734986:167741511:167741725:167742472:167742605,	167741512	167741725	167741625	167741625	Frame_Shift_Del	T	-	p.N124fs
SKCM	TCGA-D9-A1JW-06	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461137	48461137	Frame_Shift_Del	T	-	p.D853fs
SKCM	TCGA-EE-A2GD-06	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232044	132232044	Frame_Shift_Del	C	-	p.V760fs
SKCM	TCGA-EB-A3Y6-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53574633:53575234:53575919:53576466:53577626:53577729,	53575920	53576466	53576039	53576040	Frame_Shift_Ins	-	ACGC	p.S3306fs
SKCM	TCGA-EE-A2GB-06	XPR1	ENST00000367590.4,ENST00000367589.3	chr1	180842938:180843078:180849211:180849433:180853141:180855262,	180849212	180849433	180849298	180849298	Frame_Shift_Del	C	-	p.A632fs
SKCM	TCGA-ER-A42H-01	MTIF3	ENST00000461838.1,ENST00000381116.1,ENST00000405591.2,ENST00000431572.2,ENST00000381120.3	chr13	28009820:28010030:28011252:28011410:28014125:28014586,	28011253	28011410	28011285	28011288	Frame_Shift_Del	CTTT	-	p.195_196del
SKCM	TCGA-ER-A42H-01	SLC27A1	ENST00000442725.1,ENST00000252595.7	chr19	17581348:17581516:17597371:17597766:17597982:17598144,	17597372	17597766	17597456	17597456	Frame_Shift_Del	G	-	p.A84fs
SKCM	TCGA-ER-A42H-01	SLC27A1	ENST00000600297.1,ENST00000600277.1	chr19	17581348:17581516:17597371:17598144:17598268:17598338,	17597372	17598144	17597456	17597456	Frame_Shift_Del	G	-	p.A84fs
SKCM	TCGA-ER-A42H-01	SUCLG1	ENST00000487809.1,ENST00000393868.2	chr2	84652538:84652727:84658631:84658783:84660475:84660559,	84658632	84658783	84658735	84658736	Frame_Shift_Del	TC	-	p.241_241del
SKCM	TCGA-ER-A42H-01	VIL1	ENST00000454069.1	chr2	219288999:219289074:219290337:219290522:219292687:219292796,	219290338	219290522	219290373	219290379	Frame_Shift_Del	CCACTAC	-	p.62_64del
SKCM	TCGA-ER-A42H-01	VIL1	ENST00000440053.1,ENST00000248444.5	chr2	219288999:219289074:219290337:219290534:219292687:219292796,	219290338	219290534	219290373	219290379	Frame_Shift_Del	CCACTAC	-	p.62_64del
SKCM	TCGA-D9-A148-06	NFIB	ENST00000397581.2,ENST00000380934.4,ENST00000397579.2,ENST00000380959.3,ENST00000543693.1,ENST00000380924.1,ENST00000380953.1,ENST00000397575.3	chr9	14125630:14125765:14146687:14146806:14150143:14150264,	14146688	14146806	14146714	14146714	Frame_Shift_Del	C	-	p.S326fs
SKCM	TCGA-D3-A51T-06	LUC7L3	ENST00000240304.1,ENST00000544170.1,ENST00000505658.1,ENST00000508482.1,ENST00000393227.2	chr17	48821066:48821171:48822012:48822174:48823080:48823364,	48822013	48822174	48822077	48822078	Frame_Shift_Ins	-	A	p.L199fs
SKCM	TCGA-FS-A1ZS-06	C20orf27	ENST00000399672.1,ENST00000217195.8,ENST00000379772.3	chr20	3734551:3734805:3735043:3735166:3736115:3736254,	3735044	3735166	3735139	3735139	Frame_Shift_Del	G	-	p.A135fs
SKCM	TCGA-ER-A194-01	CENPE	ENST00000265148.3	chr4	104059507:104059606:104060945:104061236:104061412:104061571,	104060946	104061236	104061189	104061189	Frame_Shift_Del	T	-	p.D1988fs
SKCM	TCGA-D3-A2JN-06	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449708	26449708	Frame_Shift_Del	A	-	p.C179X
SKCM	TCGA-EE-A2GO-06	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845528	63845528	Frame_Shift_Del	C	-	p.P422fs
SKCM	TCGA-RP-A695-06	UBFD1	ENST00000395878.3,ENST00000563366.1,ENST00000565634.1,ENST00000219638.4,ENST00000567212.1	chr16	23573945:23574051:23578307:23578390:23581800:23581896,	23578308	23578390	23578329	23578330	Frame_Shift_Ins	-	G	p.M253fs
SKCM	TCGA-EE-A2MM-06	CCNG1	ENST00000393929.1,ENST00000340828.2,ENST00000511490.2	chr5	162864799:162864810:162866262:162866526:162868083:162868163,	162866263	162866526	162866446	162866447	Frame_Shift_Ins	-	TA	p.L62fs
SKCM	TCGA-BF-A3DM-01	LDHA	ENST00000396222.2,ENST00000430553.2,ENST00000227157.4,ENST00000494573.2,ENST00000541097.1,ENST00000539814.1	chr11	18416132:18416183:18418365:18418515:18420977:18421068,	18418366	18418515	18418438	18418439	Frame_Shift_Ins	-	AG	p.Q17fs
SKCM	TCGA-BF-A3DM-01	NOMO1	ENST00000287667.7,ENST00000566883.1,ENST00000566917.1	chr16	14947793:14947883:14951073:14951179:14951361:14951408,	14951074	14951179	14951157	14951158	Frame_Shift_Ins	-	A	p.V349fs
SKCM	TCGA-EB-A5UN-06	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610608	52610609	Frame_Shift_Ins	-	T	p.E1189fs
SKCM	TCGA-EE-A2A5-06	PLEKHO1	ENST00000369126.1,ENST00000479194.1,ENST00000025469.6,ENST00000369124.4	chr1	150123101:150123248:150128259:150128400:150129104:150129209,	150128260	150128400	150128303	150128304	Frame_Shift_Ins	-	AGTGTGAAGAG	p.D74_Y75delinsEVX
SKCM	TCGA-EE-A2A5-06	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5540665	5540666	Frame_Shift_Del	AG	-	p.412_412del
SKCM	TCGA-EE-A185-06	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347908	89347908	Frame_Shift_Del	G	-	p.A1681fs
SKCM	TCGA-D3-A2JL-06	ARHGAP10	ENST00000507661.1,ENST00000506054.1,ENST00000336498.3,ENST00000414545.2	chr4	148803017:148803083:148827788:148827870:148830882:148830928,	148827789	148827870	148827861	148827861	Frame_Shift_Del	A	-	p.G369fs
SKCM	TCGA-HR-A2OG-06	TBC1D5	ENST00000429383.4,ENST00000253692.7,ENST00000414318.2	chr3	17255698:17255862:17279654:17279911:17299997:17300083,	17279655	17279911	17279855	17279855	Frame_Shift_Del	T	-	p.N463fs
SKCM	TCGA-D9-A1X3-06	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728792	100728792	Frame_Shift_Del	A	-	p.A277fs
SKCM	TCGA-D3-A3ML-06	CELSR2	ENST00000271332.3	chr1	109812554:109812755:109813047:109813222:109813548:109813661,	109813048	109813222	109813099	109813099	Frame_Shift_Del	T	-	p.F2454fs
SKCM	TCGA-D3-A3ML-06	PHACTR3	ENST00000359926.3,ENST00000355648.4,ENST00000371015.1,ENST00000395636.2,ENST00000541461.1	chr20	58330236:58330419:58342240:58342450:58348333:58348508,	58342241	58342450	58342249	58342249	Frame_Shift_Del	C	-	p.P184fs
SKCM	TCGA-EE-A3AF-06	ARHGAP6	ENST00000534860.1,ENST00000303025.6,ENST00000380736.1,ENST00000337414.4	chrX	11160352:11160433:11162099:11162368:11174648:11174746,	11162100	11162368	11162261	11162288	Frame_Shift_Del	TTGTTGTCATAAGGGGAGATGTCTCCGC	-	p.SGDISPYDNN663fs
SKCM	TCGA-DA-A1I2-06	TM9SF3	ENST00000371142.4	chr10	98287169:98287253:98287787:98287934:98290296:98290365,	98287788	98287934	98287894	98287895	Frame_Shift_Ins	-	AT	p.C479fs
SKCM	TCGA-EE-A29V-06	FAM117B	ENST00000303116.6,ENST00000392238.2	chr2	203590972:203591086:203620260:203620404:203621935:203622161,	203620261	203620404	203620370	203620370	Frame_Shift_Del	T	-	p.I113fs
SKCM	TCGA-EE-A29V-06	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
SKCM	TCGA-EE-A29V-06	PBX3	ENST00000373492.2,ENST00000373483.2,ENST00000373482.2	chr9	128510828:128510902:128691933:128692124:128697750:128697810,	128691934	128692124	128692021	128692022	Frame_Shift_Del	AT	-	p.M202fs
SKCM	TCGA-EE-A29V-06	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300286	21300286	Frame_Shift_Del	T	-	p.T273fs
SKCM	TCGA-EE-A2ML-06	IFRD2	ENST00000483071.1,ENST00000429673.2,ENST00000336089.4,ENST00000436390.1,ENST00000474556.1,ENST00000417626.2	chr3	50326685:50326787:50326877:50327059:50327142:50327193,50326685:50326791:50326877:50327059:50327142:50327193,	50326878	50327059	50326964	50326964	Frame_Shift_Del	C	-	p.L231fs
SKCM	TCGA-EE-A2ML-06	IFRD2	ENST00000414734.1	chr3	50326685:50326791:50326877:50327193:50327359:50327517,	50326878	50327193	50326964	50326964	Frame_Shift_Del	C	-	p.L231fs
SKCM	TCGA-ER-A42L-06	PKP2	ENST00000070846.6,ENST00000340811.4	chr12	32945577:32945665:32949042:32949232:32955336:32955490,	32949043	32949232	32949216	32949229	Frame_Shift_Del	AGGGAGAGTTTCTT	-	p.KETLP724fs
SKCM	TCGA-FW-A3TV-06	STX5	ENST00000491231.1,ENST00000294179.3	chr11	62595048:62595103:62598490:62598734:62599425:62599503,	62598491	62598734	62598585	62598585	Frame_Shift_Del	G	-	p.P44fs
SKCM	TCGA-D3-A2JO-06	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128150677	128150680	Frame_Shift_Del	TCTT	-	p.KD138fs
SKCM	TCGA-D3-A2JO-06	AGAP3	ENST00000463381.1	chr7	150825682:150825771:150831486:150831655:150838984:150839139,	150831487	150831655	150831524	150831524	Frame_Shift_Del	T	-	p.L456fs
SKCM	TCGA-D3-A2JO-06	MFSD12	ENST00000398558.4	chr19	3538647:3538754:3542773:3542975:3544806:3544937,	3542774	3542975	3542865	3542866	Frame_Shift_Ins	-	T	p.D510fs
SKCM	TCGA-EB-A57M-01	ZNF207	ENST00000321233.6,ENST00000342555.6,ENST00000581531.1,ENST00000341711.6,ENST00000577908.1,ENST00000394670.4	chr17	30692348:30692506:30693683:30693776:30694790:30694962,	30693684	30693776	30693707	30693710	Frame_Shift_Del	AAGT	-	p.SS284fs
SKCM	TCGA-EE-A2GP-06	MBNL1	ENST00000324210.5,ENST00000282486.6,ENST00000282488.7,ENST00000355460.2	chr3	151986751:151986881:152017193:152018156:152132729:152132897,	152017194	152018156	152018127	152018128	Frame_Shift_Ins	-	GAGT	p.S49fs
SKCM	TCGA-EE-A2MN-06	SLC29A1	ENST00000371740.5,ENST00000472176.1,ENST00000313248.7,ENST00000427851.2,ENST00000393844.1,ENST00000371755.3,ENST00000371724.1,ENST00000371708.1,ENST00000393841.1,ENST00000371713.1,ENST00000371731.1	chr6	44198304:44198402:44198547:44198626:44199100:44199198,	44198548	44198626	44198607	44198608	Frame_Shift_Ins	-	T	p.G250fs
SKCM	TCGA-GN-A4U7-06	PRRC2B	ENST00000405995.1,ENST00000458550.1,ENST00000451855.1,ENST00000372249.1,ENST00000357304.4	chr9	134353130:134353336:134353860:134354006:134354638:134354780,	134353861	134354006	134353994	134353995	Frame_Shift_Ins	-	CAGGC	p.EG1582fs
SKCM	TCGA-EE-A2GC-06	DLC1	ENST00000276297.4,ENST00000503161.2,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12960298:12960362:12968250:12968332:12973094:12973166,	12968251	12968332	12968281	12968281	Frame_Shift_Del	A	-	p.L491fs
SKCM	TCGA-D9-A149-06	RUSC1	ENST00000468764.1	chr1	155294892:155294969:155295106:155295281:155295357:155295463,155294892:155294969:155295106:155295281:155295391:155295463,	155295107	155295281	155295247	155295247	Frame_Shift_Del	C	-	p.S558fs
SKCM	TCGA-ER-A19F-06	HRAS	ENST00000493230.1,ENST00000417302.1,ENST00000462734.1,ENST00000397594.1	chr11	532728:532755:533276:533358:533452:533595,	533277	533358	533312	533321	Frame_Shift_Del	GGGTCCCAGA	-	p.LWDP163fs
SKCM	TCGA-ER-A19F-06	DLG2	ENST00000426717.2,ENST00000330014.6,ENST00000418306.2,ENST00000532653.1,ENST00000376106.3	chr11	83183769:83183820:83194295:83194341:83243750:83243826,	83194296	83194341	83194323	83194324	Frame_Shift_Ins	-	G	p.R115fs
SKCM	TCGA-FS-A4F9-06	ITGA10	ENST00000369304.3	chr1	145528253:145528345:145528569:145528684:145530266:145530394,	145528570	145528684	145528605	145528606	Frame_Shift_Del	CT	-	p.SS134fs
SKCM	TCGA-FS-A4F9-06	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121702	12121703	Frame_Shift_Del	AG	-	p.TE558fs
SKCM	TCGA-FS-A4F9-06	CYB5R4	ENST00000369681.5	chr6	84624134:84624167:84627723:84627784:84629115:84629173,	84627724	84627784	84627749	84627750	Frame_Shift_Del	AG	-	p.TD157fs
SKCM	TCGA-FS-A4F9-06	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943323:12943440:12943798:12943972:12945995:12946213,	12943799	12943972	12943882	12943882	Frame_Shift_Del	A	-	p.V1461fs
SKCM	TCGA-FS-A4F9-06	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41341131	41341132	Frame_Shift_Del	CT	-	p.S64fs
SKCM	TCGA-FS-A4F9-06	SPINT1	ENST00000344051.4,ENST00000562057.1,ENST00000431806.1	chr15	41145985:41146079:41146594:41146720:41146836:41146887,41146013:41146127:41146594:41146720:41146836:41146887,41146257:41146284:41146594:41146720:41146836:41146887,	41146595	41146720	41146652	41146653	Frame_Shift_Del	AC	-	p.D349fs
SKCM	TCGA-FS-A4F9-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577112	7577113	Frame_Shift_Del	CA	-	p.CA275fs
SKCM	TCGA-FS-A4F9-06	ZNF512B	ENST00000369888.1,ENST00000450537.1,ENST00000217130.3	chr20	62595423:62595570:62595672:62595744:62595842:62596069,	62595673	62595744	62595733	62595734	Frame_Shift_Del	TC	-	p.QK424fs
SKCM	TCGA-EE-A2MU-06	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.D90fs
SKCM	TCGA-EE-A2MF-06	HRAS	ENST00000397596.2,ENST00000451590.1,ENST00000493230.1,ENST00000417302.1,ENST00000397594.1,ENST00000311189.7	chr11	533452:533612:533765:533944:534211:534375,	533766	533944	533880	533881	Frame_Shift_Del	GC	-	p.A59fs
SKCM	TCGA-EE-A2MF-06	LRP4	ENST00000534404.1,ENST00000378623.1	chr11	46920937:46921054:46921413:46921527:46921812:46921929,	46921414	46921527	46921521	46921522	Frame_Shift_Ins	-	G	p.G108fs
SKCM	TCGA-EE-A2MF-06	LGALS1	ENST00000425542.1,ENST00000215909.5,ENST00000489315.1	chr22	38073005:38073072:38074489:38074661:38075609:38075647,	38074490	38074661	38074623	38074624	Frame_Shift_Ins	-	A	p.G75fs
SKCM	TCGA-EE-A2MF-06	LGALS1	ENST00000472321.1	chr22	38073005:38073072:38074382:38074661:38075609:38075647,	38074383	38074661	38074623	38074624	Frame_Shift_Ins	-	A	p.G75fs
SKCM	TCGA-D3-A3MR-06	ZNF438	ENST00000375311.1	chr10	31133709:31134502:31137459:31138372:31139150:31139296,	31137460	31138372	31137605	31137608	Frame_Shift_Del	CAAA	-	p.FG527fs
SKCM	TCGA-D3-A3MR-06	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060475	56060476	Frame_Shift_Ins	-	C	p.K96fs
SKCM	TCGA-D3-A3MR-06	ADAM33	ENST00000350009.2,ENST00000356518.2,ENST00000379861.4	chr20	3655185:3655340:3655419:3655496:3655673:3655752,	3655420	3655496	3655458	3655458	Frame_Shift_Del	G	-	p.P124fs
SKCM	TCGA-WE-A8K5-06	CERCAM	ENST00000487001.2	chr9	131191208:131191315:131193449:131193582:131196380:131196473,131191208:131191315:131193449:131193582:131197931:131198034,	131193450	131193582	131193477	131193477	Frame_Shift_Del	C	-	p.N288fs
SKCM	TCGA-EE-A3AB-06	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405953	157405954	Frame_Shift_Ins	-	G	p.R732fs
SKCM	TCGA-ER-A2NE-06	GABRB3	ENST00000541819.2,ENST00000311550.5,ENST00000299267.4	chr15	26828478:26828561:26866460:26866681:27017548:27017616,	26866461	26866681	26866484	26866485	Frame_Shift_Ins	-	TC	p.G202fs
SKCM	TCGA-ER-A2NE-06	DIS3L	ENST00000530537.1,ENST00000564909.1,ENST00000319194.5,ENST00000319212.4	chr15	66607373:66607553:66610786:66610956:66612908:66613070,	66610787	66610956	66610870	66610870	Frame_Shift_Del	A	-	p.K277fs
SKCM	TCGA-WE-AA9Y-06	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000526832.1,ENST00000356994.2	chr8	144885552:144885741:144885816:144886110:144886215:144886321,	144885817	144886110	144886005	144886005	Frame_Shift_Del	T	-	p.S1076fs
SKCM	TCGA-D3-A3CF-06	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336954	Frame_Shift_Del	A	-	p.L123fs
SKCM	TCGA-D3-A8GL-06	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673671	186673671	Frame_Shift_Del	A	-	p.I6635fs
SKCM	TCGA-D3-A8GL-06	NDFIP1	ENST00000253814.4	chr5	141517298:141517423:141520127:141520194:141524135:141524241,	141520128	141520194	141520182	141520182	Frame_Shift_Del	T	-	p.F184fs
SKCM	TCGA-D3-A3C8-06	RFC2	ENST00000491206.1,ENST00000479105.2,ENST00000470266.1,ENST00000493156.2,ENST00000480432.1,ENST00000352131.3,ENST00000463194.1,ENST00000055077.3,ENST00000494019.1,ENST00000497430.1	chr7	73653266:73653318:73654267:73654425:73657475:73657576,	73654268	73654425	73654277	73654277	Frame_Shift_Del	G	-	p.D228fs
SKCM	TCGA-FS-A1ZA-06	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087839	32087851	Frame_Shift_Del	AGCTTCATCAAGG	-	p.SFIKE1429fs
SKCM	TCGA-FR-A44A-06	ROBO4	ENST00000306534.3,ENST00000533054.1,ENST00000532216.1	chr11	124756359:124756718:124756872:124757109:124757253:124757395,	124756873	124757109	124756949	124756949	Frame_Shift_Del	C	-	p.E787fs
SKCM	TCGA-D3-A2J7-06	PSMD10	ENST00000361815.5,ENST00000217958.3	chrX	107330274:107331082:107331182:107331329:107331981:107332080,	107331183	107331329	107331269	107331269	Frame_Shift_Del	G	-	p.L93fs
SKCM	TCGA-YG-AA3O-06	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186276475	186276476	Frame_Shift_Ins	-	CC	p.Q542fs
SKCM	TCGA-YG-AA3O-06	RNF112	ENST00000461366.1	chr17	19318082:19318200:19318350:19318520:19318598:19318652,	19318351	19318520	19318410	19318411	Frame_Shift_Ins	-	C	p.P396fs
SKCM	TCGA-EE-A29M-06	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1651987	1651991	Frame_Shift_Del	TCAGG	-	p.DLK1187fs
SKCM	TCGA-EE-A29M-06	CPSF2	ENST00000298875.4,ENST00000555244.1	chr14	92624002:92624228:92625326:92625626:92627455:92627590,	92625327	92625626	92625548	92625549	Frame_Shift_Del	TC	-	p.SL681fs
SKCM	TCGA-YG-AA3N-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971186	21971186	Frame_Shift_Del	G	-	p.P72fs
SKCM	TCGA-YG-AA3N-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971186	21971186	Frame_Shift_Del	G	-	p.P72fs
SKCM	TCGA-YG-AA3N-01	TCF3	ENST00000262965.5,ENST00000588136.1,ENST00000453954.2,ENST00000395423.3,ENST00000344749.5	chr19	1621836:1621969:1622052:1622222:1622311:1622414,	1622053	1622222	1622191	1622191	Frame_Shift_Del	C	-	p.W228fs
SKCM	TCGA-BF-A3DM-01	AQP3	ENST00000494313.1,ENST00000297991.4	chr9	33441772:33442209:33442298:33442516:33442849:33442968,	33442299	33442516	33442435	33442435	Frame_Shift_Del	C	-	p.A192fs
SKCM	TCGA-BF-A3DM-01	LDHA	ENST00000396222.2,ENST00000430553.2,ENST00000227157.4,ENST00000494573.2,ENST00000541097.1,ENST00000539814.1	chr11	18416132:18416183:18418365:18418515:18420977:18421068,	18418366	18418515	18418438	18418439	Frame_Shift_Ins	-	AG	p.D17fs
SKCM	TCGA-D3-A1Q6-06	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
SKCM	TCGA-D3-A8GC-06	ZDHHC1	ENST00000348579.2,ENST00000565726.1	chr16	67432114:67432227:67432475:67432634:67432722:67432832,	67432476	67432634	67432540	67432540	Frame_Shift_Del	G	-	p.L250fs
SKCM	TCGA-D3-A51R-06	SLC35F5	ENST00000409106.1,ENST00000245680.2	chr2	114493353:114493435:114500268:114500456:114501289:114501371,	114500269	114500456	114500277	114500277	Frame_Shift_Del	A	-	p.C248fs
SKCM	TCGA-FR-A7U9-06	AQP3	ENST00000494313.1,ENST00000297991.4	chr9	33441772:33442209:33442298:33442516:33442849:33442968,	33442299	33442516	33442431	33442431	Frame_Shift_Del	A	-	p.F193fs
SKCM	TCGA-D3-A2JN-06	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449708	26449708	Frame_Shift_Del	A	-	p.K180fs
SKCM	TCGA-DA-A1HV-06	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371501.4	chr10	95082874:95082930:95083026:95083115:95085582:95085722,	95083027	95083115	95083038	95083038	Frame_Shift_Del	C	-	p.R1783fs
SKCM	TCGA-DA-A1HV-06	ARID4A	ENST00000355431.3	chr14	58832741:58832948:58833600:58833747:58838603:58838678,	58833601	58833747	58833673	58833673	Frame_Shift_Del	A	-	p.Y1200fs
SKCM	TCGA-FR-A7U8-06	ETS1	ENST00000535549.1	chr11	128333403:128333522:128350085:128350346:128354717:128354966,128333403:128333522:128350085:128350346:128391807:128392205,	128350086	128350346	128350333	128350334	Frame_Shift_Ins	-	C	p.A292fs
SKCM	TCGA-D3-A1Q5-06	TMEM14B	ENST00000379542.5,ENST00000467317.1,ENST00000491103.1,ENST00000475942.1	chr6	10749854:10749931:10751365:10751467:10770309:10770437,10749854:10749931:10751365:10751467:10755374:10755465,	10751366	10751467	10751386	10751404	Frame_Shift_Del	GCAGGGCTGCTCTTCGGCA	-	p.AGLLFGS41fs
SKCM	TCGA-D3-A1Q5-06	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
SKCM	TCGA-D9-A6E9-06	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.A88fs
SKCM	TCGA-D9-A6E9-06	PAFAH1B1	ENST00000570400.1	chr17	2541591:2541614:2569309:2569384:2570285:2570492,	2569310	2569384	2569346	2569347	Frame_Shift_Ins	-	A	p.K52fs
SKCM	TCGA-EE-A20H-06	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023941	64023941	Frame_Shift_Del	T	-	p.R91fs
SKCM	TCGA-EB-A1NK-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27874264	27874264	Frame_Shift_Del	G	-	p.H1455fs
SKCM	TCGA-EB-A1NK-01	MRPL33	ENST00000296102.3,ENST00000476552.1	chr2	27995540:27995559:27997290:27997397:28002299:28002406,	27997291	27997397	27997313	27997313	Frame_Shift_Del	A	-	p.S22fs
SKCM	TCGA-EB-A1NK-01	PCDH17	ENST00000377918.3	chr13	58209161:58209245:58240601:58240660:58240794:58240967,	58240602	58240660	58240609	58240610	Frame_Shift_Ins	-	T	p.I858fs
SKCM	TCGA-EB-A1NK-01	STK11	ENST00000589152.1,ENST00000593219.1,ENST00000326873.7	chr19	1219322:1219412:1220371:1220504:1220579:1220616,	1220372	1220504	1220396	1220403	Frame_Shift_Del	CCTGGAGT	-	p.GLEY163fs
SKCM	TCGA-FR-A8YD-06	NPRL3	ENST00000405960.3,ENST00000456528.1	chr16	180520:180590:188148:188333:188640:188665,	188149	188333	188184	188184	Frame_Shift_Del	A	-	p.F28fs
SKCM	TCGA-FR-A8YD-06	CDYL2	ENST00000563890.1,ENST00000566173.1,ENST00000562812.1,ENST00000570137.2	chr16	80637812:80638443:80641988:80642132:80646522:80646733,	80641989	80642132	80642049	80642049	Frame_Shift_Del	G	-	p.P434fs
SKCM	TCGA-D3-A1Q3-06	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
SKCM	TCGA-D3-A1Q3-06	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
SKCM	TCGA-D3-A1Q3-06	ENDOV	ENST00000522577.1,ENST00000520284.1	chr17	78396005:78396045:78397319:78397432:78398831:78398857,78389468:78389621:78397319:78397432:78398831:78398857,	78397320	78397432	78397370	78397370	Frame_Shift_Del	G	-	p.G152fs
SKCM	TCGA-EE-A3JI-06	KIAA0319L	ENST00000325722.3,ENST00000482929.2,ENST00000426982.2,ENST00000478463.2,ENST00000440579.1,ENST00000469892.1	chr1	35944660:35944813:35972212:35972736:36019950:36020120,	35972213	35972736	35972235	35972236	Frame_Shift_Del	AG	-	p.L215fs
SKCM	TCGA-EE-A3JI-06	ABL2	ENST00000392043.3,ENST00000509520.1,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3,ENST00000504324.1	chr1	179090729:179091002:179095511:179095807:179100445:179100616,	179095512	179095807	179095686	179095687	Frame_Shift_Del	GT	-	p.H171fs
SKCM	TCGA-EE-A3JI-06	NTPCR	ENST00000496662.1	chr1	233092097:233092189:233105654:233105864:233113908:233114228,233086385:233086490:233105654:233105864:233113908:233114228,	233105655	233105864	233105685	233105686	Frame_Shift_Del	GT	-	p.V109fs
SKCM	TCGA-EE-A3JI-06	EIF2AK2	ENST00000405334.1,ENST00000233057.4,ENST00000395127.2,ENST00000462861.1	chr2	37334488:37334538:37334616:37334670:37336336:37336438,	37334617	37334670	37334636	37334637	Frame_Shift_Del	TC	-	p.D505fs
SKCM	TCGA-EE-A3JI-06	MITD1	ENST00000409107.1,ENST00000422537.2,ENST00000289359.2	chr2	99787972:99788109:99790377:99790479:99797293:99797390,	99790378	99790479	99790457	99790458	Frame_Shift_Del	TC	-	p.R58fs
SKCM	TCGA-EE-A3JI-06	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1	chr2	231313802:231313865:231314275:231314425:231314886:231314970,	231314276	231314425	231314322	231314323	Frame_Shift_Del	AG	-	p.TE211fs
SKCM	TCGA-EE-A3JI-06	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365876	37365877	Frame_Shift_Del	AG	-	p.TE833fs
SKCM	TCGA-EE-A3JI-06	TMF1	ENST00000543976.1,ENST00000398559.2	chr3	69077376:69077446:69078965:69079158:69082698:69082855,	69078966	69079158	69079119	69079120	Frame_Shift_Del	TC	-	p.E817fs
SKCM	TCGA-EE-A3JI-06	INTU	ENST00000503626.1,ENST00000503952.1,ENST00000335251.6,ENST00000296461.5	chr4	128584535:128584739:128590190:128590309:128595278:128595368,	128590191	128590309	128590269	128590270	Frame_Shift_Del	TG	-	p.C351fs
SKCM	TCGA-EE-A3JI-06	TGFBI	ENST00000507018.1,ENST00000305126.8,ENST00000442011.2	chr5	135382539:135382704:135382962:135383109:135385127:135385167,	135382963	135383109	135382971	135382972	Frame_Shift_Del	TG	-	p.TV211fs
SKCM	TCGA-EE-A3JI-06	KDM3B	ENST00000510866.1,ENST00000314358.5,ENST00000512928.1	chr5	137713408:137713514:137715272:137715397:137717204:137717279,	137715273	137715397	137715279	137715280	Frame_Shift_Del	AC	-	p.Y196fs
SKCM	TCGA-EE-A3JI-06	NR3C1	ENST00000503201.1	chr5	142693566:142693733:142779220:142780417:142783940:142784035,	142779221	142780417	142780124	142780125	Frame_Shift_Del	TC	-	p.E94fs
SKCM	TCGA-EE-A3JI-06	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3	chr6	28887788:28888019:28889668:28889764:28890989:28891690,	28889669	28889764	28889744	28889744	Frame_Shift_Del	G	-	p.L147fs
SKCM	TCGA-EE-A3JI-06	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673453	151673454	Frame_Shift_Del	AG	-	p.TE1309fs
SKCM	TCGA-EE-A3JI-06	MADD	ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000311027.5,ENST00000402192.2	chr11	47306496:47306616:47307001:47307141:47307983:47308085,47306496:47306616:47307001:47307141:47310941:47311044,47306491:47306745:47307001:47307141:47307983:47308085,	47307002	47307141	47307065	47307066	Frame_Shift_Del	CT	-	p.DS825fs
SKCM	TCGA-EE-A3JI-06	DDB1	ENST00000540166.1,ENST00000539332.1,ENST00000450997.2,ENST00000301764.7	chr11	61071336:61071507:61076454:61076549:61077267:61077432,	61076455	61076549	61076533	61076534	Frame_Shift_Del	CA	-	p.V861fs
SKCM	TCGA-EE-A3JI-06	PPFIA1	ENST00000389547.3,ENST00000532504.1,ENST00000253925.7	chr11	70170952:70171117:70171605:70171680:70172367:70172469,	70171606	70171680	70171677	70171678	Frame_Shift_Del	AG	-	p.KE201fs
SKCM	TCGA-EE-A3JI-06	INPPL1	ENST00000298229.2,ENST00000541756.1,ENST00000541544.1	chr11	71936112:71936210:71939233:71939297:71939391:71939542,	71939234	71939297	71939239	71939240	Frame_Shift_Del	AG	-	p.Q63fs
SKCM	TCGA-EE-A3JI-06	BIRC2	ENST00000532672.1	chr11	102219328:102219495:102220608:102221480:102221574:102221674,	102220609	102221480	102221293	102221294	Frame_Shift_Ins	-	A	p.V237fs
SKCM	TCGA-EE-A3JI-06	BIRC2	ENST00000227758.2	chr11	102217999:102218107:102219328:102221480:102221574:102221674,	102219329	102221480	102221293	102221294	Frame_Shift_Ins	-	A	p.V237fs
SKCM	TCGA-EE-A3JI-06	BIRC2	ENST00000530675.1	chr11	102217999:102218107:102220731:102221480:102221574:102221674,	102220732	102221480	102221293	102221294	Frame_Shift_Ins	-	A	p.V237fs
SKCM	TCGA-EE-A3JI-06	UTP20	ENST00000261637.4	chr12	101773148:101773336:101774917:101774989:101776818:101777091,	101774918	101774989	101774928	101774929	Frame_Shift_Del	TC	-	p.I2532fs
SKCM	TCGA-EE-A3JI-06	STX2	ENST00000261653.6,ENST00000392373.2,ENST00000344271.5	chr12	131285959:131286033:131291526:131291635:131293175:131293249,	131291527	131291635	131291609	131291610	Frame_Shift_Del	CA	-	p.V127fs
SKCM	TCGA-EE-A3JI-06	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1	chr16	19498266:19498342:19498514:19498648:19501716:19501890,	19498515	19498648	19498593	19498594	Frame_Shift_Del	CT	-	p.L840fs
SKCM	TCGA-EE-A3JI-06	AP1G1	ENST00000563259.1,ENST00000423132.2,ENST00000565009.1,ENST00000433195.2,ENST00000569748.1,ENST00000568327.1,ENST00000299980.4,ENST00000393512.3	chr16	71805062:71805155:71807123:71807265:71808370:71808495,	71807124	71807265	71807192	71807193	Frame_Shift_Del	TC	-	p.EM133fs
SKCM	TCGA-FS-A1Z3-06	RECQL	ENST00000421138.2,ENST00000396093.3,ENST00000314748.6,ENST00000444129.2	chr12	21636410:21636508:21639412:21639519:21643132:21643312,	21639413	21639519	21639515	21639515	Frame_Shift_Del	A	-	p.F133fs
SKCM	TCGA-ER-A194-01	CENPE	ENST00000265148.3	chr4	104059507:104059606:104060945:104061236:104061412:104061571,	104060946	104061236	104061189	104061189	Frame_Shift_Del	T	-	p.E1987fs
SKCM	TCGA-QB-AA9O-06	G2E3	ENST00000544007.1	chr14	31070975:31071100:31071204:31071337:31077093:31077125,	31071205	31071337	31071221	31071222	Frame_Shift_Ins	-	A	p.AK298fs
SKCM	TCGA-QB-AA9O-06	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3	chr19	1108781:1108968:1109133:1109210:1109290:1109422,	1109134	1109210	1109180	1109180	Frame_Shift_Del	C	-	p.E1127fs
SKCM	TCGA-HR-A5NC-01	WDR90	ENST00000549091.1,ENST00000547407.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1,ENST00000552943.1	chr16	709244:709376:710057:710161:710611:710714,	710058	710161	710080	710080	Frame_Shift_Del	G	-	p.S1069fs
SKCM	TCGA-D3-A3CC-06	CD44	ENST00000528455.1	chr11	35219694:35219793:35222628:35222742:35223217:35223300,35219694:35219793:35222628:35222742:35223214:35223278,35211561:35211612:35222628:35222742:35223214:35223278,35211561:35211612:35222628:35222742:35223217:35223300,	35222629	35222742	35222633	35222634	Frame_Shift_Ins	-	ACCAC	p.H310fs
SKCM	TCGA-BF-AAOX-01	FABP6	ENST00000523955.1,ENST00000393980.4,ENST00000393982.1,ENST00000521362.1,ENST00000402432.3	chr5	159659104:159659280:159661826:159661916:159665612:159665723,	159661827	159661916	159661867	159661868	Frame_Shift_Ins	-	G	p.S144fs
SKCM	TCGA-BF-AAOX-01	ERG	ENST00000442448.1,ENST00000398911.1,ENST00000398910.1,ENST00000468474.1,ENST00000417133.2,ENST00000398919.2	chr21	39795331:39795483:39817326:39817544:39870286:39870345,39795331:39795483:39817326:39817544:39947585:39947671,	39817327	39817544	39817338	39817338	Frame_Shift_Del	C	-	p.V82fs
SKCM	TCGA-EB-A5FP-01	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039149	49039179	Frame_Shift_Del	TTGATCAAAGAAGAGGAGTATGATTCTATTA	-	p.LIKEEEYDSII743fs
SKCM	TCGA-EE-A3JH-06	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000578804.1,ENST00000540698.2,ENST00000450599.2,ENST00000578758.1	chr17	62496302:62496444:62496666:62496891:62498127:62498187,	62496667	62496891	62496834	62496835	Frame_Shift_Ins	-	A	p.Y425fs
SKCM	TCGA-EE-A3JH-06	DDX5	ENST00000581230.1	chr17	62496302:62496444:62496666:62498187:62498279:62498341,	62496667	62498187	62496834	62496835	Frame_Shift_Ins	-	A	p.Y425fs
SKCM	TCGA-D3-A2JE-06	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465991	59465992	Frame_Shift_Ins	-	A	p.E891fs
SKCM	TCGA-W3-A825-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971192	21971193	Frame_Shift_Ins	-	G	p.A70fs
SKCM	TCGA-W3-A825-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971192	21971193	Frame_Shift_Ins	-	G	p.A70fs
SKCM	TCGA-FS-A1ZS-06	C20orf27	ENST00000399672.1,ENST00000217195.8,ENST00000379772.3	chr20	3734551:3734805:3735043:3735166:3736115:3736254,	3735044	3735166	3735139	3735139	Frame_Shift_Del	G	-	p.A110fs
SKCM	TCGA-D3-A8GQ-06	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232126	71232126	Frame_Shift_Del	G	-	p.A169fs
SKCM	TCGA-GN-A266-06	CFH	ENST00000466229.1,ENST00000367429.4	chr1	196697481:196697652:196705953:196706136:196706604:196706790,	196705954	196706136	196706058	196706059	Frame_Shift_Ins	-	A	p.R840fs
SKCM	TCGA-GN-A266-06	ACADVL	ENST00000356839.5,ENST00000543245.2,ENST00000322910.5,ENST00000350303.5,ENST00000583858.1	chr17	7126078:7126184:7126451:7126556:7126962:7127049,	7126452	7126556	7126487	7126488	Frame_Shift_Ins	-	A	p.N372fs
SKCM	TCGA-GN-A266-06	IRF3	ENST00000601291.1	chr19	50163014:50163090:50165204:50165585:50165681:50165874,50163969:50164085:50165204:50165585:50165681:50165719,50163969:50164101:50165204:50165585:50165681:50165874,	50165205	50165585	50165513	50165513	Frame_Shift_Del	C	-	p.G225fs
SKCM	TCGA-GN-A266-06	IRF3	ENST00000597636.1	chr19	50163969:50164085:50164706:50165585:50165681:50165719,	50164707	50165585	50165513	50165513	Frame_Shift_Del	C	-	p.G225fs
SKCM	TCGA-EE-A2MC-06	MFSD12	ENST00000398558.4	chr19	3538647:3538754:3542773:3542975:3544806:3544937,	3542774	3542975	3542858	3542859	Frame_Shift_Ins	-	G	p.G513fs
SKCM	TCGA-RP-A695-06	RYR3	ENST00000389232.4,ENST00000415757.3	chr15	34129106:34129188:34129831:34131159:34133025:34133084,	34129832	34131159	34129961	34129961	Frame_Shift_Del	C	-	p.T3927fs
SKCM	TCGA-RP-A695-06	UBFD1	ENST00000395878.3,ENST00000563366.1,ENST00000565634.1,ENST00000219638.4,ENST00000567212.1	chr16	23573945:23574051:23578307:23578390:23581800:23581896,	23578308	23578390	23578329	23578330	Frame_Shift_Ins	-	G	p.R253fs
SKCM	TCGA-D3-A2JH-06	TACC3	ENST00000313288.4	chr4	1741685:1741729:1742552:1742713:1746244:1746351,	1742553	1742713	1742558	1742559	Frame_Shift_Ins	-	T	p.S690fs
SKCM	TCGA-EE-A184-06	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77523967:77524063:77536685:77536760:77563343:77563419,	77536686	77536760	77536740	77536741	Frame_Shift_Ins	-	T	p.S75fs
SKCM	TCGA-EE-A184-06	ANO1	ENST00000398543.2,ENST00000538023.1	chr11	69924678:69924820:69933857:69934190:69949171:69949191,	69933858	69934190	69934084	69934084	Frame_Shift_Del	C	-	p.S112fs
SKCM	TCGA-RP-A693-06	CHN1	ENST00000409156.3,ENST00000409900.3,ENST00000409089.2,ENST00000409597.1,ENST00000444394.1,ENST00000295497.7,ENST00000488080.1	chr2	175666448:175666540:175673632:175673770:175676238:175676316,	175673633	175673770	175673651	175673655	Frame_Shift_Del	TAGGG	-	p.YPK360fs
SKCM	TCGA-RP-A693-06	PSD	ENST00000406432.1,ENST00000020673.5	chr10	104174619:104174986:104175773:104175876:104176141:104176878,	104175774	104175876	104175780	104175781	Frame_Shift_Ins	-	G	p.L251fs
SKCM	TCGA-EE-A2GM-06	COL16A1	ENST00000373668.3,ENST00000373672.3	chr1	32158692:32158755:32159744:32159771:32160786:32160822,	32159745	32159771	32159756	32159757	Frame_Shift_Ins	-	TG	p.W333fs
SKCM	TCGA-EE-A2GM-06	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
SKCM	TCGA-EE-A3J7-06	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389836	11389837	Frame_Shift_Ins	-	A	p.G138fs
SKCM	TCGA-EE-A3J7-06	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561447	142561448	Frame_Shift_Ins	-	G	p.PG53fs
SKCM	TCGA-EE-A3J7-06	COL17A1	ENST00000353479.5	chr10	105799730:105799757:105800108:105800168:105800822:105800876,	105800109	105800168	105800146	105800147	Frame_Shift_Ins	-	G	p.R908fs
SKCM	TCGA-BF-AAP7-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1,ENST00000434523.2	chr2	48049356:48049442:48050281:48050499:48059487:48059590,	48050282	48050499	48050401	48050407	Frame_Shift_Del	ATGGTGA	-	p.IHH497fs
SKCM	TCGA-BF-AAP7-01	LEF1	ENST00000379951.2,ENST00000503879.1,ENST00000505379.1,ENST00000265165.1,ENST00000510624.1,ENST00000506680.1,ENST00000509428.1,ENST00000438313.2,ENST00000510135.1	chr4	108985491:108985540:108991818:108991926:108999375:108999508,	108991819	108991926	108991871	108991877	Frame_Shift_Del	TCTTTCC	-	p.RKE325fs
SKCM	TCGA-ER-A197-06	MBOAT7	ENST00000391754.1,ENST00000245615.1,ENST00000495968.1,ENST00000491216.1,ENST00000437868.1	chr19	54692070:54692200:54692286:54692365:54693188:54693211,	54692287	54692365	54692318	54692318	Frame_Shift_Del	G	-	p.S15fs
SKCM	TCGA-ER-A19E-06	NEK8	ENST00000268766.6	chr17	27066101:27066219:27067480:27067631:27067839:27068003,	27067481	27067631	27067605	27067605	Frame_Shift_Del	C	-	p.G514fs
SKCM	TCGA-DA-A95Y-06	CEP78	ENST00000487108.2,ENST00000424347.2,ENST00000415759.2,ENST00000376598.2,ENST00000376597.4,ENST00000498582.2,ENST00000277082.5	chr9	80869758:80869880:80877822:80877900:80879065:80879144,	80877823	80877900	80877886	80877886	Frame_Shift_Del	A	-	p.K482fs
SKCM	TCGA-DA-A95Y-06	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.HP1875fs
SKCM	TCGA-FW-A3I3-06	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186987	100186987	Frame_Shift_Del	G	-	p.P324fs
SKCM	TCGA-FW-A3I3-06	MYO1C	ENST00000545534.2,ENST00000575158.1,ENST00000359786.5,ENST00000361007.2,ENST00000438665.2	chr17	1378105:1378152:1378231:1378326:1380798:1380890,	1378232	1378326	1378283	1378284	Frame_Shift_Ins	-	T	p.RG539fs
SKCM	TCGA-EE-A2MR-06	MLH1	ENST00000435176.1,ENST00000539477.1,ENST00000458205.2,ENST00000456676.2,ENST00000536378.1,ENST00000231790.2,ENST00000455445.2	chr3	37070274:37070423:37081676:37081785:37083758:37083822,	37081677	37081785	37081681	37081681	Frame_Shift_Del	C	-	p.L521fs
SKCM	TCGA-EE-A2MR-06	ERAL1	ENST00000577942.1,ENST00000254928.5,ENST00000471992.1	chr17	27185391:27185504:27185593:27185842:27185981:27186110,	27185594	27185842	27185807	27185807	Frame_Shift_Del	T	-	p.S309fs
SKCM	TCGA-EE-A2MR-06	SGSH	ENST00000570427.1	chr17	78188088:78188127:78188413:78188582:78188831:78188937,	78188414	78188582	78188470	78188473	Frame_Shift_Del	CCGC	-	p.GR149fs
SKCM	TCGA-EE-A2MR-06	SGSH	ENST00000574505.1	chr17	78188088:78188127:78188413:78188478:78188831:78188937,	78188414	78188478	78188470	78188473	Frame_Shift_Del	CCGC	-	p.GR149fs
SKCM	TCGA-EE-A2MR-06	SGSH	ENST00000576707.1,ENST00000570923.1,ENST00000326317.6,ENST00000575282.1	chr17	78188088:78188127:78188413:78188564:78190830:78190991,78188088:78188127:78188413:78188564:78188831:78188937,	78188414	78188564	78188470	78188473	Frame_Shift_Del	CCGC	-	p.GR149fs
SKCM	TCGA-D3-A8GM-06	ZRANB2	ENST00000370920.3,ENST00000254821.6	chr1	71542477:71542560:71544139:71544248:71544338:71544391,	71544140	71544248	71544212	71544212	Frame_Shift_Del	C	-	p.G49fs
SKCM	TCGA-D3-A8GM-06	SEMA4F	ENST00000357877.2	chr2	74884691:74884751:74889858:74889952:74900583:74900626,74884979:74885078:74889858:74889952:74900583:74900626,	74889859	74889952	74889902	74889902	Frame_Shift_Del	G	-	p.R167fs
SKCM	TCGA-D3-A8GM-06	ATG9A	ENST00000475339.1,ENST00000409033.3,ENST00000409422.1,ENST00000409618.1,ENST00000361242.4,ENST00000396761.2,ENST00000446716.1	chr2	220085168:220085174:220085468:220085614:220085801:220086024,	220085469	220085614	220085482	220085482	Frame_Shift_Del	G	-	p.P834fs
SKCM	TCGA-D3-A8GM-06	GLB1	ENST00000307377.8,ENST00000399402.3,ENST00000307363.5,ENST00000445488.2	chr3	33038220:33038836:33055547:33055802:33058200:33058332,	33055548	33055802	33055705	33055705	Frame_Shift_Del	C	-	p.G526fs
SKCM	TCGA-D3-A8GM-06	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93603571:93603740:93605179:93605347:93611776:93611966,	93605180	93605347	93605261	93605261	Frame_Shift_Del	A	-	p.F414fs
SKCM	TCGA-D3-A8GM-06	CMSS1	ENST00000421999.2,ENST00000489081.1,ENST00000491299.1	chr3	99865816:99865905:99879273:99879345:99881146:99881276,	99879274	99879345	99879285	99879285	Frame_Shift_Del	T	-	p.C55fs
SKCM	TCGA-D3-A8GM-06	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828132	121828132	Frame_Shift_Del	C	-	p.P243fs
SKCM	TCGA-D3-A8GM-06	PARP14	ENST00000474669.1,ENST00000474629.2,ENST00000460683.1	chr3	122436917:122437124:122437205:122437805:122439101:122439235,	122437206	122437805	122437236	122437236	Frame_Shift_Del	A	-	p.Q1413fs
SKCM	TCGA-D3-A8GM-06	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547663	165547664	Frame_Shift_Ins	-	A	p.R387fs
SKCM	TCGA-D3-A8GM-06	TNIP2	ENST00000510267.1,ENST00000505186.1,ENST00000315423.7	chr4	2746113:2746233:2746423:2746672:2747172:2747262,	2746424	2746672	2746609	2746610	Frame_Shift_Ins	-	C	p.P134fs
SKCM	TCGA-D3-A8GM-06	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823494	114823494	Frame_Shift_Del	T	-	p.K582fs
SKCM	TCGA-D3-A8GM-06	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64867924	64867925	Frame_Shift_Ins	-	A	p.PK260fs
SKCM	TCGA-D3-A8GM-06	NOTCH4	ENST00000375023.3,ENST00000473562.1	chr6	32187905:32188061:32188181:32188418:32188532:32188655,	32188182	32188418	32188294	32188295	Frame_Shift_Ins	-	C	p.D349fs
SKCM	TCGA-D3-A8GM-06	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634211	84634211	Frame_Shift_Del	A	-	p.G238fs
SKCM	TCGA-D3-A8GM-06	ELMO1	ENST00000448602.1,ENST00000310758.4,ENST00000455879.1,ENST00000442504.1,ENST00000455119.1	chr7	37298785:37298955:37311436:37311487:37354453:37354526,	37311437	37311487	37311468	37311468	Frame_Shift_Del	T	-	p.N71fs
SKCM	TCGA-D3-A8GM-06	ABCB1	ENST00000488737.2,ENST00000543898.1,ENST00000265724.3,ENST00000496821.1	chr7	87144546:87144744:87145824:87145981:87148641:87148782,	87145825	87145981	87145866	87145866	Frame_Shift_Del	T	-	p.T1015fs
SKCM	TCGA-D3-A8GM-06	AKR1B15	ENST00000423958.1,ENST00000457545.2	chr7	134254164:134254281:134256355:134256433:134260171:134260294,	134256356	134256433	134256368	134256368	Frame_Shift_Del	T	-	p.F151fs
SKCM	TCGA-D3-A8GM-06	TBXAS1	ENST00000448866.1,ENST00000458722.1,ENST00000425687.1,ENST00000436047.2,ENST00000422328.1,ENST00000336425.5,ENST00000416849.2,ENST00000263552.6	chr7	139706890:139706982:139715522:139715660:139719824:139720079,139706890:139706982:139715522:139715660:139717470:139717633,	139715523	139715660	139715608	139715609	Frame_Shift_Ins	-	A	p.A439fs
SKCM	TCGA-D3-A8GM-06	CCDC180	ENST00000357054.1,ENST00000395220.1	chr9	100124644:100124723:100126299:100126410:100127954:100128021,	100126300	100126410	100126319	100126319	Frame_Shift_Del	C	-	p.P1286fs
SKCM	TCGA-D3-A8GM-06	RSU1	ENST00000345264.5,ENST00000377921.3,ENST00000602389.1,ENST00000377911.1	chr10	16796869:16796988:16806388:16806509:16824032:16824083,	16806389	16806509	16806457	16806457	Frame_Shift_Del	A	-	p.F71fs
SKCM	TCGA-D3-A8GM-06	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115986880	115986880	Frame_Shift_Del	A	-	p.L1075fs
SKCM	TCGA-D3-A8GM-06	PDZD8	ENST00000334464.5	chr10	119049696:119049859:119078382:119078485:119100490:119100613,	119078383	119078485	119078441	119078442	Frame_Shift_Ins	-	A	p.H347fs
SKCM	TCGA-D3-A8GM-06	ETS1	ENST00000535549.1	chr11	128333403:128333522:128350085:128350346:128354717:128354966,128333403:128333522:128350085:128350346:128391807:128392205,	128350086	128350346	128350333	128350334	Frame_Shift_Ins	-	C	p.A292fs
SKCM	TCGA-D3-A8GM-06	NFRKB	ENST00000531755.1	chr11	129746615:129746790:129747219:129747280:129748205:129748246,	129747220	129747280	129747229	129747229	Frame_Shift_Del	A	-	p.F521fs
SKCM	TCGA-D3-A8GM-06	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46321474	46321475	Frame_Shift_Ins	-	T	p.K355fs
SKCM	TCGA-D3-A8GM-06	ANAPC5	ENST00000441917.2,ENST00000544442.1,ENST00000534976.1,ENST00000344395.4,ENST00000541887.1,ENST00000261819.3,ENST00000541652.1,ENST00000536366.1	chr12	121775093:121775195:121779805:121779872:121783641:121783834,	121779806	121779872	121779833	121779833	Frame_Shift_Del	T	-	p.K210fs
SKCM	TCGA-D3-A8GM-06	RB1	ENST00000267163.4	chr13	49037866:49037971:49039133:49039247:49039340:49039504,	49039134	49039247	49039224	49039225	Frame_Shift_Ins	-	T	p.F768fs
SKCM	TCGA-D3-A8GM-06	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181814	100181814	Frame_Shift_Del	A	-	p.K144fs
SKCM	TCGA-D3-A8GM-06	AK7	ENST00000267584.4	chr14	96909066:96909155:96912853:96912944:96916138:96916216,	96912854	96912944	96912858	96912858	Frame_Shift_Del	A	-	p.I262fs
SKCM	TCGA-D3-A8GM-06	ZNF839	ENST00000262236.5,ENST00000442396.2,ENST00000559185.1,ENST00000559155.1,ENST00000558490.1,ENST00000558850.1,ENST00000561251.1,ENST00000560568.1	chr14	102800890:102800983:102802025:102802175:102805152:102805167,	102802026	102802175	102802052	102802052	Frame_Shift_Del	T	-	p.P396fs
SKCM	TCGA-D3-A8GM-06	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68438999:68439038:68445927:68446033:68457068:68457142,	68445928	68446033	68446029	68446029	Frame_Shift_Del	T	-	p.A312fs
SKCM	TCGA-D3-A8GM-06	RCCD1	ENST00000557266.1,ENST00000394258.2,ENST00000555155.1,ENST00000555737.1,ENST00000556618.1	chr15	91500342:91500733:91500833:91500955:91503129:91503208,	91500834	91500955	91500927	91500927	Frame_Shift_Del	G	-	p.A217fs
SKCM	TCGA-D3-A8GM-06	MEFV	ENST00000537682.1,ENST00000538326.1	chr16	3299430:3299780:3304157:3304790:3306310:3306587,	3304158	3304790	3304734	3304734	Frame_Shift_Del	C	-	p.E112fs
SKCM	TCGA-D3-A8GM-06	RNF40	ENST00000563683.1	chr16	30776745:30776820:30777699:30777879:30778061:30778193,	30777700	30777879	30777817	30777817	Frame_Shift_Del	G	-	p.E411fs
SKCM	TCGA-D3-A8GM-06	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945528	6945528	Frame_Shift_Del	C	-	p.V326fs
SKCM	TCGA-D3-A8GM-06	NDEL1	ENST00000402554.3	chr17	8363326:8363478:8366637:8366672:8370247:8370318,	8366638	8366672	8366654	8366654	Frame_Shift_Del	T	-	p.F321fs
SKCM	TCGA-D3-A8GM-06	GAA	ENST00000572080.1,ENST00000302262.3,ENST00000390015.3	chr17	78086674:78086826:78087016:78087165:78090766:78090881,	78087017	78087165	78087132	78087133	Frame_Shift_Ins	-	G	p.G719fs
SKCM	TCGA-D3-A8GM-06	TMEM143	ENST00000435956.3	chr19	48863328:48863433:48866547:48866788:48867154:48867178,48848529:48848611:48866547:48866788:48867154:48867178,	48866548	48866788	48866687	48866688	Frame_Shift_Ins	-	G	p.G42fs
SKCM	TCGA-D3-A8GM-06	SLC23A2	ENST00000423430.1,ENST00000338244.1,ENST00000379333.1,ENST00000424750.2	chr20	4840012:4840030:4842593:4842731:4843423:4843553,	4842594	4842731	4842633	4842649	Frame_Shift_Del	CGAGCCCAAAGAAGATC	-	p.SIFFGLV523fs
SKCM	TCGA-D3-A8GM-06	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9371177:9371262:9374234:9374325:9376169:9376265,	9374235	9374325	9374291	9374292	Frame_Shift_Del	AA	-	p.IK460fs
SKCM	TCGA-D3-A8GM-06	ARFGAP1	ENST00000519604.1,ENST00000353546.3,ENST00000547204.1	chr20	61916217:61916274:61917005:61917065:61917717:61917750,61916217:61916274:61917005:61917065:61917723:61917794,	61917006	61917065	61917046	61917047	Frame_Shift_Del	TC	-	p.V272fs
SKCM	TCGA-D3-A51G-06	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
SKCM	TCGA-D3-A51G-06	NBEAL1	ENST00000414576.2,ENST00000434469.1,ENST00000449802.1	chr2	204073359:204073476:204073883:204074045:204075680:204075829,	204073884	204074045	204073989	204073989	Frame_Shift_Del	T	-	p.S2548fs
SKCM	TCGA-D3-A51G-06	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64112135	64112136	Frame_Shift_Ins	-	T	p.P708fs
SKCM	TCGA-GF-A6C9-06	GBP3	ENST00000235878.5,ENST00000370481.4,ENST00000493594.2	chr1	89477510:89477710:89478867:89479110:89479765:89479962,	89478868	89479110	89478895	89478895	Frame_Shift_Del	A	-	p.S281fs
SKCM	TCGA-GF-A6C9-06	TFAP2A	ENST00000497266.1,ENST00000482890.1,ENST00000488193.1,ENST00000379608.3,ENST00000379604.2,ENST00000489805.1,ENST00000379613.3,ENST00000319516.4	chr6	10398920:10398938:10400680:10400822:10402724:10402843,	10400681	10400822	10400698	10400699	Frame_Shift_Ins	-	T	p.N338fs
SKCM	TCGA-GF-A6C9-06	B3GAT1	ENST00000312527.4	chr11	134253892:134254082:134257441:134257834:134281700:134281812,	134257442	134257834	134257463	134257464	Frame_Shift_Ins	-	T	p.AP30fs
SKCM	TCGA-GF-A6C9-06	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672094	77672094	Frame_Shift_Del	A	-	p.H3065fs
SKCM	TCGA-GF-A6C9-06	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5240209:5240343:5243911:5244493:5245786:5246056,	5243912	5244493	5244193	5244193	Frame_Shift_Del	G	-	p.P431fs
SKCM	TCGA-EE-A2GE-06	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1,ENST00000400866.2	chrX	76872080:76872198:76874273:76874449:76875862:76876000,	76874274	76874449	76874353	76874354	Frame_Shift_Ins	-	CACA	p.R1790fs
SKCM	TCGA-EE-A29A-06	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515266	183515267	Frame_Shift_Ins	-	A	p.K829fs
SKCM	TCGA-FS-A1ZW-06	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24197299:24197887:24225442:24225592:24225828:24225972,	24225443	24225592	24225549	24225550	Frame_Shift_Ins	-	A	p.G252fs
SKCM	TCGA-FR-A726-01	SRD5A3	ENST00000264228.4	chr4	56225512:56225655:56230240:56230438:56235998:56236142,56225512:56225655:56230240:56230438:56233754:56233889,	56230241	56230438	56230278	56230278	Frame_Shift_Del	A	-	p.V134fs
SKCM	TCGA-FR-A726-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198832	20198832	Frame_Shift_Del	A	-	p.F384fs
SKCM	TCGA-FR-A726-01	POLR3B	ENST00000539066.1,ENST00000228347.4	chr12	106850915:106851074:106853028:106853146:106857255:106857398,	106853029	106853146	106853058	106853058	Frame_Shift_Del	G	-	p.V828fs
SKCM	TCGA-FR-A726-01	CCDC42	ENST00000293845.3	chr17	8638413:8638572:8638707:8638929:8644791:8644989,	8638708	8638929	8638781	8638785	Frame_Shift_Del	ATCTC	-	p.EI213fs
SKCM	TCGA-EE-A2MS-06	ERLEC1	ENST00000378239.5,ENST00000185150.4	chr2	54041679:54041757:54041996:54042072:54045034:54045357,	54041997	54042072	54042070	54042070	Frame_Shift_Del	G	-	p.G460fs
SKCM	TCGA-EE-A2MS-06	DPP10	ENST00000393147.2	chr2	115919810:115919849:116066814:116066929:116101392:116101488,115919178:115919605:116066814:116066929:116101392:116101488,	116066815	116066929	116066879	116066879	Frame_Shift_Del	T	-	p.I42fs
SKCM	TCGA-EE-A2MS-06	DHX30	ENST00000446256.2,ENST00000395745.2,ENST00000348968.4,ENST00000457607.1,ENST00000445061.1	chr3	47883106:47883227:47884595:47884745:47887189:47887342,	47884596	47884745	47884677	47884677	Frame_Shift_Del	G	-	p.V252fs
SKCM	TCGA-ER-A3ET-06	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028370	100028392	Frame_Shift_Del	TTGCACTGATGAGGGCCATGTAG	-	p.TCTDEGHVV243fs
SKCM	TCGA-FS-A1ZP-06	PPP2R3B	ENST00000445792.2,ENST00000496630.1,ENST00000390665.3	chrX	307968:308071:308324:308428:322139:322251,	308325	308428	308374	308374	Frame_Shift_Del	C	-	p.E189fs
SKCM	TCGA-FS-A4F2-06	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717762	5717762	Frame_Shift_Del	T	-	p.H100fs
SKCM	TCGA-D9-A3Z1-06	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150922632	150922633	Frame_Shift_Ins	-	T	p.NI2685fs
SKCM	TCGA-EB-A85I-01	IPO9	ENST00000361565.4	chr1	201840288:201840455:201841955:201842089:201843377:201843500,	201841956	201842089	201842075	201842076	Frame_Shift_Ins	-	T	p.*899fs
SKCM	TCGA-EB-A85I-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155247	108155247	Frame_Shift_Del	A	-	p.F230fs
SKCM	TCGA-EB-A85I-01	PNPLA8	ENST00000453144.1	chr7	108154587:108154737:108154879:108155891:108161919:108161965,108154725:108154737:108154879:108155891:108166472:108166564,	108154880	108155891	108155247	108155247	Frame_Shift_Del	A	-	p.F230fs
SKCM	TCGA-FW-A3TU-06	PRICKLE3	ENST00000540849.1,ENST00000453382.1,ENST00000432913.1,ENST00000376317.3	chrX	49035599:49035737:49036041:49036155:49040186:49040370,	49036042	49036155	49036095	49036095	Frame_Shift_Del	C	-	p.E125fs
SKCM	TCGA-ER-A195-06	ATF5	ENST00000423777.2,ENST00000595125.1	chr19	50432499:50432657:50433988:50434285:50435678:50435865,	50433989	50434285	50434266	50434266	Frame_Shift_Del	G	-	p.V53fs
SKCM	TCGA-EB-A97M-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
SKCM	TCGA-EB-A97M-01	GART	ENST00000424203.1,ENST00000381815.4,ENST00000543717.1,ENST00000381839.3,ENST00000381831.3	chr21	34878346:34878411:34882089:34882227:34883558:34883611,	34882090	34882227	34882121	34882122	Frame_Shift_Ins	-	T	p.S807fs
SKCM	TCGA-RP-A6K9-06	ME2	ENST00000382927.3	chr18	48405489:48405678:48422178:48422298:48434432:48434566,	48422179	48422298	48422258	48422258	Frame_Shift_Del	A	-	p.E23fs
SKCM	TCGA-DA-A95W-06	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120194786:120194863:120212319:120212416:120213492:120215793,	120212320	120212416	120212395	120212396	Frame_Shift_Ins	-	A	p.K776fs
SKCM	TCGA-DA-A95W-06	GAS8	ENST00000563936.1,ENST00000536122.1	chr16	90089090:90089132:90094043:90094130:90097706:90097904,90089090:90089132:90094043:90094130:90097597:90097814,90089090:90089132:90094043:90094130:90097583:90097597,90086451:90086564:90094043:90094130:90097597:90097814,90086138:90086176:90094043:90094130:90097583:90097597,90086138:90086176:90094043:90094130:90097706:90097904,	90094044	90094130	90094081	90094082	Frame_Shift_Del	GC	-	p.G14fs
SKCM	TCGA-W3-AA1R-06	KCNH5	ENST00000322893.7	chr14	63174284:63175173:63246445:63246642:63269046:63269299,	63246446	63246642	63246595	63246596	Frame_Shift_Ins	-	A	p.LP623fs
SKCM	TCGA-W3-AA1R-06	ITGB2	ENST00000520389.1	chr21	46326829:46327010:46327988:46328097:46330198:46330276,	46327989	46328097	46328080	46328080	Frame_Shift_Del	A	-	p.P56fs
SKCM	TCGA-3N-A9WC-06	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000530582.1,ENST00000534409.1,ENST00000532381.1,ENST00000533792.1,ENST00000530081.1	chr11	7655725:7655783:7656782:7656824:7660962:7661042,	7656783	7656824	7656804	7656804	Frame_Shift_Del	T	-	p.F406fs
SKCM	TCGA-EB-A51B-01	HOOK3	ENST00000527306.1,ENST00000307602.4	chr8	42821615:42821756:42823155:42823357:42828431:42828542,	42823156	42823357	42823319	42823320	Frame_Shift_Ins	-	AC	p.R362fs
SKCM	TCGA-EB-A51B-01	CCDC117	ENST00000432510.1,ENST00000443309.2,ENST00000453543.1,ENST00000249064.4	chr22	29169712:29169766:29176935:29177160:29179495:29179633,	29176936	29177160	29177147	29177148	Frame_Shift_Del	GA	-	p.E151fs
SKCM	TCGA-D9-A3Z3-06	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
SKCM	TCGA-FS-A1ZT-06	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134350033	134350034	Frame_Shift_Ins	-	GC	p.DR839fs
SKCM	TCGA-EE-A2A2-06	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384901	124384902	Frame_Shift_Ins	-	A	p.E115fs
SKCM	TCGA-EE-A2A2-06	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
SKCM	TCGA-EE-A2A2-06	SLC27A1	ENST00000442725.1,ENST00000600297.1,ENST00000598424.1,ENST00000252595.7,ENST00000599380.1	chr19	17598268:17598338:17599656:17599748:17599816:17599874,	17599657	17599748	17599665	17599683	Frame_Shift_Del	GCATGGCAGCCTTCGGCCA	-	p.RMAAFGH268fs
SKCM	TCGA-EE-A2A2-06	PQBP1	ENST00000465859.1	chrX	48759232:48759319:48759495:48759794:48760008:48760070,	48759496	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.R151fs
SKCM	TCGA-EE-A2A2-06	PQBP1	ENST00000443648.1,ENST00000447146.2,ENST00000473764.1,ENST00000396763.1,ENST00000477997.1,ENST00000474671.1,ENST00000376563.1,ENST00000218224.4	chrX	48759232:48759319:48759509:48759794:48760008:48760070,	48759510	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.R151fs
SKCM	TCGA-Z2-A8RT-06	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
SKCM	TCGA-GN-A26A-06	CLK2	ENST00000368361.4,ENST00000355560.4,ENST00000497188.1,ENST00000361168.5,ENST00000476983.1,ENST00000536801.1	chr1	155235650:155235745:155236519:155236686:155237800:155237917,	155236520	155236686	155236673	155236674	Frame_Shift_Ins	-	C	p.HV228fs
SKCM	TCGA-GN-A26A-06	CMTM4	ENST00000330687.4,ENST00000561680.1	chr16	66651133:66651261:66655964:66656125:66657306:66657405,	66655965	66656125	66656033	66656034	Frame_Shift_Ins	-	T	p.R185fs
SKCM	TCGA-EE-A183-06	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357512	50357512	Frame_Shift_Del	G	-	p.Q477fs
SKCM	TCGA-EE-A183-06	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349891	89349895	Frame_Shift_Del	TTCCT	-	p.RK1019fs
SKCM	TCGA-EB-A6R0-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717673	89717674	Frame_Shift_Ins	-	AC	p.P233fs
SKCM	TCGA-EB-A44R-06	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37209935	37209936	Frame_Shift_Ins	-	A	p.QK72fs
SKCM	TCGA-EE-A29S-06	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590342	5590343	Frame_Shift_Ins	-	C	p.V824fs
SKCM	TCGA-BF-AAP0-06	SGCD	ENST00000435422.3,ENST00000337851.4,ENST00000517913.1,ENST00000447401.1	chr5	156016240:156016328:156021941:156022061:156074473:156074546,	156021942	156022061	156021946	156021946	Frame_Shift_Del	A	-	p.P128fs
SKCM	TCGA-WE-A8ZY-06	CASZ1	ENST00000377022.3,ENST00000344008.5	chr1	10710748:10710812:10710997:10711133:10713433:10714275,	10710998	10711133	10711097	10711097	Frame_Shift_Del	G	-	p.P906fs
SKCM	TCGA-EE-A17X-06	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682332	108682333	Frame_Shift_Del	TT	-	p.KR909fs
SKCM	TCGA-GN-A265-06	C16orf58	ENST00000567994.1,ENST00000327237.2,ENST00000541442.1,ENST00000566148.1	chr16	31512006:31512052:31519084:31519199:31519394:31519454,	31519085	31519199	31519172	31519172	Frame_Shift_Del	G	-	p.L110fs
SKCM	TCGA-BF-A1Q0-01	PEX14	ENST00000356607.4,ENST00000538836.1	chr1	10683075:10683178:10684396:10684494:10687328:10687420,	10684397	10684494	10684419	10684419	Frame_Shift_Del	C	-	p.L170fs
SKCM	TCGA-BF-A1Q0-01	ZMPSTE24	ENST00000372759.3	chr1	40751596:40751701:40756525:40756669:40758116:40758293,	40756526	40756669	40756542	40756543	Frame_Shift_Ins	-	T	p.F359fs
SKCM	TCGA-BF-A1Q0-01	FN1	ENST00000443816.1,ENST00000432072.2,ENST00000456923.1,ENST00000356005.4,ENST00000357867.4,ENST00000421182.1	chr2	216245533:216245803:216246934:216247048:216248050:216248206,216243927:216244040:216246934:216247048:216248050:216248206,	216246935	216247048	216246963	216246964	Frame_Shift_Ins	-	CT	p.T1712fs
SKCM	TCGA-XV-A9W5-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690833	89690834	Frame_Shift_Del	AT	-	p.KF80fs
SKCM	TCGA-XV-A9W5-01	TMEM184B	ENST00000361684.4,ENST00000436674.1,ENST00000464059.1,ENST00000361906.3	chr22	38621526:38621600:38622785:38622877:38626674:38626750,	38622786	38622877	38622793	38622793	Frame_Shift_Del	C	-	p.D204fs
SKCM	TCGA-FS-A4FB-06	TNPO1	ENST00000337273.5,ENST00000506351.2	chr5	72151600:72151750:72157634:72157741:72161422:72161520,	72157635	72157741	72157710	72157726	Frame_Shift_Del	TGTTGGATTCTGAAGAT	-	p.LLDSED144fs
SKCM	TCGA-FS-A4FB-06	CASC4	ENST00000299957.6,ENST00000345795.2,ENST00000559222.1,ENST00000559037.1	chr15	44620897:44620985:44624185:44624276:44629960:44630079,	44624186	44624276	44624241	44624241	Frame_Shift_Del	A	-	p.K182fs
SKCM	TCGA-HR-A2OH-06	MIS18BP1	ENST00000454990.1	chr14	45711963:45712077:45715945:45716580:45722237:45722380,	45715946	45716580	45716018	45716019	Frame_Shift_Ins	-	T	p.NA157fs
SKCM	TCGA-DA-A95Z-06	NGLY1	ENST00000396649.3,ENST00000280700.5,ENST00000422724.2,ENST00000417874.2,ENST00000280699.9	chr3	25775362:25775473:25777494:25777640:25778824:25778946,	25777495	25777640	25777583	25777583	Frame_Shift_Del	G	-	p.A354fs
SKCM	TCGA-DA-A95Z-06	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
SKCM	TCGA-BF-AAP1-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163579	163580	Frame_Shift_Ins	-	C	p.T775fs
SKCM	TCGA-BF-AAP1-01	TRERF1	ENST00000340840.2,ENST00000372917.4	chr6	42200418:42200630:42203942:42204149:42210985:42211099,42200418:42200666:42203942:42204149:42210985:42211099,	42203943	42204149	42204030	42204036	Frame_Shift_Del	GGGGACG	-	p.PVP1011fs
SKCM	TCGA-FR-A3R1-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921001	57921002	Frame_Shift_Ins	-	C	p.TP691fs
SKCM	TCGA-DA-A1I0-06	ANXA7	ENST00000372919.4,ENST00000492380.1,ENST00000372921.5,ENST00000535178.1	chr10	75143018:75143103:75143334:75143448:75147446:75147535,	75143335	75143448	75143420	75143420	Frame_Shift_Del	A	-	p.L221fs
SKCM	TCGA-DA-A1I1-06	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
SKCM	TCGA-DA-A1I1-06	TBC1D17	ENST00000221543.5,ENST00000596243.1,ENST00000594984.1,ENST00000535102.2	chr19	50387915:50388015:50390732:50390830:50390974:50391091,	50390733	50390830	50390749	50390750	Frame_Shift_Del	CT	-	p.GS487fs
SKCM	TCGA-EE-A2MT-06	CSDE1	ENST00000261443.5,ENST00000358528.4,ENST00000369530.1,ENST00000339438.6,ENST00000534699.1,ENST00000530886.1,ENST00000438362.2,ENST00000529046.1	chr1	115276389:115276478:115276609:115276738:115277062:115277144,	115276610	115276738	115276684	115276687	Frame_Shift_Del	AGTG	-	p.HY258fs
SKCM	TCGA-EE-A2MT-06	NR1I3	ENST00000367982.4,ENST00000515621.1,ENST00000367983.4,ENST00000512372.1,ENST00000428574.2,ENST00000504010.1,ENST00000367980.2,ENST00000505005.1,ENST00000367981.3,ENST00000412844.2,ENST00000508740.1,ENST00000515452.1,ENST00000442691.2,ENST00000367979.2,ENST00000506209.1,ENST00000511676.1,ENST00000506018.1,ENST00000367984.4,ENST00000367985.3,ENST00000437437.2	chr1	161202596:161202736:161202958:161203128:161205636:161205767,	161202959	161203128	161203046	161203058	Frame_Shift_Del	ACTCAGTTGCACA	-	p.PVQLS103fs
SKCM	TCGA-EE-A2MT-06	EFTUD2	ENST00000589769.1,ENST00000590977.1	chr17	42929077:42929185:42929776:42929930:42930663:42930758,42929077:42929185:42929776:42929930:42930884:42931003,	42929777	42929930	42929896	42929896	Frame_Shift_Del	A	-	p.S866fs
SKCM	TCGA-EE-A2MT-06	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465991	59465992	Frame_Shift_Ins	-	A	p.E891fs
SKCM	TCGA-D3-A5GU-06	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107965538:107965714:107966256:107966418:107968362:107968481,	107966257	107966418	107966294	107966300	Frame_Shift_Del	AGGTAAC	-	p.EVT594fs
SKCM	TCGA-EB-A44P-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670303	186670304	Frame_Shift_Ins	-	A	p.K5513fs
SKCM	TCGA-ER-A2NH-06	SLCO2B1	ENST00000428359.2,ENST00000527180.1,ENST00000289575.5	chr11	74862257:74862442:74876831:74876994:74883423:74883614,74862257:74862442:74876831:74876994:74880217:74880286,74875007:74875145:74876831:74876994:74880217:74880286,	74876832	74876994	74876960	74876960	Frame_Shift_Del	C	-	p.I138fs
SKCM	TCGA-ER-A2NH-06	DMD	ENST00000361471.4,ENST00000359836.1,ENST00000474231.1,ENST00000378723.3,ENST00000358062.2,ENST00000378702.4,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31165391:31165635:31187559:31187718:31190464:31190530,	31187560	31187718	31187635	31187635	Frame_Shift_Del	T	-	p.Q3493fs
SKCM	TCGA-ER-A2NH-06	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41007621:41007828:41010173:41010310:41012200:41012334,	41010174	41010310	41010280	41010283	Frame_Shift_Del	GTTT	-	p.SL578fs
SKCM	TCGA-GN-A4U4-06	COPS3	ENST00000462236.1,ENST00000584216.1,ENST00000417352.1,ENST00000477299.1,ENST00000268717.5	chr17	17174209:17174322:17179348:17179478:17184445:17184474,	17179349	17179478	17179429	17179429	Frame_Shift_Del	A	-	p.L15fs
SKCM	TCGA-GN-A4U4-06	COPS3	ENST00000578317.1,ENST00000492672.1	chr17	17174209:17174322:17179348:17179497:17184445:17184474,	17179349	17179497	17179429	17179429	Frame_Shift_Del	A	-	p.L15fs
SKCM	TCGA-GN-A4U4-06	PRKD2	ENST00000291281.4,ENST00000601806.1,ENST00000597641.1,ENST00000595515.1,ENST00000600194.1,ENST00000433867.1	chr19	47207593:47207648:47207751:47207906:47214163:47214295,	47207752	47207906	47207846	47207847	Frame_Shift_Ins	-	CC	p.P191fs
SKCM	TCGA-D3-A8GK-06	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
SKCM	TCGA-D3-A8GK-06	RCCD1	ENST00000557266.1,ENST00000394258.2,ENST00000555155.1,ENST00000555737.1,ENST00000556618.1	chr15	91500342:91500733:91500833:91500955:91503129:91503208,	91500834	91500955	91500926	91500927	Frame_Shift_Ins	-	G	p.G217fs
SKCM	TCGA-D3-A2J6-06	NDUFS7	ENST00000540530.1,ENST00000534853.1,ENST00000535382.1,ENST00000233627.9,ENST00000538929.1,ENST00000546283.1,ENST00000313408.7,ENST00000538662.1,ENST00000539480.1,ENST00000546172.3,ENST00000538523.1	chr19	1388523:1388592:1388831:1388937:1390869:1391049,	1388832	1388937	1388895	1388896	Frame_Shift_Del	TG	-	p.YV62fs
SKCM	TCGA-D3-A2J6-06	NDUFS7	ENST00000414651.2	chr19	1388523:1388592:1388741:1388937:1390869:1391049,	1388742	1388937	1388895	1388896	Frame_Shift_Del	TG	-	p.YV62fs
SKCM	TCGA-EE-A20F-06	KIAA1324	ENST00000369939.3,ENST00000527996.1	chr1	109716095:109716201:109716309:109716459:109730798:109730976,109716095:109716201:109716309:109716459:109727666:109727755,	109716310	109716459	109716417	109716418	Frame_Shift_Ins	-	GA	p.R304fs
SKCM	TCGA-EE-A20F-06	SLC33A1	ENST00000359479.3	chr3	155551645:155551830:155560220:155560408:155571011:155571106,	155560221	155560408	155560378	155560378	Frame_Shift_Del	A	-	p.L269fs
SKCM	TCGA-EE-A20F-06	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
SKCM	TCGA-EE-A20F-06	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
SKCM	TCGA-EE-A182-06	ESYT1	ENST00000394048.5	chr12	56527564:56527657:56527893:56527965:56528125:56528212,	56527894	56527965	56527952	56527952	Frame_Shift_Del	C	-	p.T511fs
SKCM	TCGA-EE-A182-06	ESYT1	ENST00000541590.1,ENST00000267113.4	chr12	56527564:56527657:56527863:56527965:56528125:56528212,	56527864	56527965	56527952	56527952	Frame_Shift_Del	C	-	p.T511fs
SKCM	TCGA-D3-A3MU-06	RBM11	ENST00000400577.3,ENST00000468643.1,ENST00000495055.1	chr21	15593417:15593490:15596758:15596858:15599200:15599705,	15596759	15596858	15596777	15596777	Frame_Shift_Del	G	-	p.V117fs
SKCM	TCGA-Z2-AA3S-06	FNBP1	ENST00000449089.2,ENST00000355681.3,ENST00000446176.2,ENST00000420781.1	chr9	132719638:132719743:132720769:132720832:132740743:132740891,	132720770	132720832	132720812	132720812	Frame_Shift_Del	T	-	p.K122fs
SKCM	TCGA-BF-AAP4-01	LEPR	ENST00000344610.8,ENST00000406510.3,ENST00000462765.1,ENST00000371060.3,ENST00000371059.3,ENST00000349533.6,ENST00000371058.1	chr1	66031228:66031288:66036155:66036485:66038008:66038132,	66036156	66036485	66036212	66036212	Frame_Shift_Del	T	-	p.F33fs
SKCM	TCGA-BF-AAP4-01	TTC37	ENST00000502768.1,ENST00000358746.2	chr5	94818297:94818335:94820427:94820549:94826611:94826740,	94820428	94820549	94820436	94820437	Frame_Shift_Del	AG	-	p.LC1348fs
SKCM	TCGA-D3-A3CE-06	ETV7	ENST00000340181.4,ENST00000339796.5	chr6	36339106:36339337:36341229:36341355:36343647:36343812,	36341230	36341355	36341294	36341294	Frame_Shift_Del	C	-	p.G68fs
SKCM	TCGA-FS-A4F4-06	NF1	ENST00000487476.1,ENST00000495910.2,ENST00000358273.4,ENST00000431387.4,ENST00000579081.1,ENST00000356175.3	chr17	29509525:29509683:29527439:29527613:29528054:29528177,	29527440	29527613	29527570	29527571	Frame_Shift_Ins	-	T	p.C340fs
SKCM	TCGA-FS-A4FD-06	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532524	3532525	Frame_Shift_Ins	-	G	p.W373fs
SKCM	TCGA-GN-A264-06	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257784	6257785	Frame_Shift_Ins	-	T	p.K15fs
SKCM	TCGA-EE-A2GO-06	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845528	63845528	Frame_Shift_Del	C	-	p.R423fs
SKCM	TCGA-EE-A2GO-06	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699358	17699359	Frame_Shift_Ins	-	C	p.GP1032fs
SKCM	TCGA-EB-A82B-01	DMRT1	ENST00000382276.3,ENST00000569227.1	chr9	846959:847143:893911:894195:916762:916907,	893912	894195	894000	894001	Frame_Shift_Ins	-	T	p.*Q209fs
SKCM	TCGA-EB-A82B-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306277	33306278	Frame_Shift_Ins	-	C	p.GP721fs
SKCM	TCGA-D3-A51T-06	LUC7L3	ENST00000240304.1,ENST00000544170.1,ENST00000505658.1,ENST00000508482.1,ENST00000393227.2	chr17	48821066:48821171:48822012:48822174:48823080:48823364,	48822013	48822174	48822077	48822078	Frame_Shift_Ins	-	A	p.Y199fs
SKCM	TCGA-BF-AAP2-01	PIAS1	ENST00000545237.1,ENST00000249636.6	chr15	68457068:68457142:68466069:68466230:68467974:68468105,	68466070	68466230	68466162	68466163	Frame_Shift_Ins	-	A	p.EK369fs
SKCM	TCGA-BF-AAP2-01	OPHN1	ENST00000355520.5,ENST00000540071.1	chrX	67429994:67430124:67431949:67432054:67433703:67433814,	67431950	67432054	67432020	67432020	Frame_Shift_Del	T	-	p.N211fs
SKCM	TCGA-EE-A180-06	TSEN15	ENST00000462677.2	chr1	184023861:184023997:184041290:184041432:184041960:184042114,184039749:184039866:184041290:184041432:184041960:184042114,	184041291	184041432	184041309	184041310	Frame_Shift_Del	GG	-	p.KA124fs
SKCM	TCGA-EE-A180-06	TSEN15	ENST00000533373.1	chr1	184023861:184023997:184041290:184041328:184041960:184042114,	184041291	184041328	184041309	184041310	Frame_Shift_Del	GG	-	p.KA124fs
SKCM	TCGA-EE-A180-06	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508369	71508370	Frame_Shift_Ins	-	A	p.K169fs
SKCM	TCGA-GN-A8LN-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023940	64023941	Frame_Shift_Ins	-	T	p.E91fs
SKCM	TCGA-EB-A6QZ-01	ACAT1	ENST00000265838.4	chr11	108005868:108005969:108009624:108009768:108010791:108010898,	108009625	108009768	108009679	108009689	Frame_Shift_Del	AACAGAGGATC	-	p.NRGS164fs
SKCM	TCGA-YD-A9TB-06	HECTD4	ENST00000550722.1,ENST00000377560.5,ENST00000430131.2	chr12	112664446:112664562:112665892:112666062:112666450:112666608,	112665893	112666062	112665955	112665956	Frame_Shift_Ins	-	G	p.D2118fs
SKCM	TCGA-W3-AA1Q-06	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844493	27844493	Frame_Shift_Del	C	-	p.T576fs
SKCM	TCGA-W3-AA1Q-06	PIM2	ENST00000376509.4	chrX	48771672:48771848:48772296:48772669:48775057:48775108,	48772297	48772669	48772498	48772499	Frame_Shift_Del	TC	-	p.EK131fs
SKCM	TCGA-EB-A6QY-01	TYK2	ENST00000525621.1,ENST00000264818.6,ENST00000524462.1,ENST00000529370.1	chr19	10472753:10472857:10472939:10473132:10473224:10473333,	10472940	10473132	10473031	10473031	Frame_Shift_Del	A	-	p.V526fs
SKCM	TCGA-BF-A5EO-01	CNRIP1	ENST00000409862.1	chr2	68544288:68544439:68546353:68546598:68546903:68547019,	68546354	68546598	68546460	68546460	Frame_Shift_Del	A	-	p.Y25fs
SKCM	TCGA-BF-A5EO-01	SGK1	ENST00000525877.1,ENST00000528577.1,ENST00000477460.2,ENST00000367858.5,ENST00000367857.5,ENST00000367855.3,ENST00000237305.7,ENST00000413996.3,ENST00000475719.2,ENST00000489458.2	chr6	134492788:134492870:134493330:134493454:134493799:134493877,	134493331	134493454	134493445	134493445	Frame_Shift_Del	T	-	p.K319fs
SKCM	TCGA-FS-A1Z4-06	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
SKCM	TCGA-FS-A1Z4-06	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579399	7579399	Frame_Shift_Del	A	-	p.S96fs
SKCM	TCGA-EE-A2MJ-06	MTA3	ENST00000493983.1	chr2	42836597:42836724:42871266:42871384:42883339:42883345,	42871267	42871384	42871289	42871289	Frame_Shift_Del	T	-	p.V79fs
SKCM	TCGA-D3-A3MO-06	AFF4	ENST00000265343.5	chr5	132223788:132223852:132224770:132224865:132227855:132228096,	132224771	132224865	132224853	132224853	Frame_Shift_Del	T	-	p.S887fs
SKCM	TCGA-D3-A3MO-06	NUP188	ENST00000372577.2	chr9	131721293:131721413:131730784:131730996:131731678:131731793,	131730785	131730996	131730827	131730828	Frame_Shift_Ins	-	A	p.T210fs
SKCM	TCGA-D3-A5GO-06	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153590609:153590700:153590785:153590946:153591028:153591152,	153590786	153590946	153590823	153590824	Frame_Shift_Ins	-	C	p.W843fs
SKCM	TCGA-EE-A2A5-06	PLEKHO1	ENST00000369126.1,ENST00000479194.1,ENST00000025469.6,ENST00000369124.4	chr1	150123101:150123248:150128259:150128400:150129104:150129209,	150128260	150128400	150128303	150128304	Frame_Shift_Ins	-	AGTGTGAAGAG	p.V74fs
SKCM	TCGA-EE-A2A5-06	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5540665	5540666	Frame_Shift_Del	AG	-	p.L412fs
SKCM	TCGA-FS-A4F5-06	ATRIP	ENST00000346691.4,ENST00000454733.1,ENST00000320211.3,ENST00000357105.6,ENST00000424906.1,ENST00000412052.1	chr3	48500761:48500853:48501185:48501315:48501508:48501561,	48501186	48501315	48501288	48501289	Frame_Shift_Del	CC	-	p.T250fs
SKCM	TCGA-FS-A4F5-06	NR4A1	ENST00000394825.1	chr12	52435593:52435713:52448110:52448988:52449813:52449935,52445246:52445352:52448110:52448988:52449813:52449935,	52448111	52448988	52448454	52448454	Frame_Shift_Del	C	-	p.G168fs
SKCM	TCGA-BF-A5EP-01	LHCGR	ENST00000294954.7,ENST00000344775.3,ENST00000403273.1,ENST00000405626.1,ENST00000428232.1,ENST00000401907.1	chr2	48952814:48952889:48956291:48956366:48958365:48958437,	48956292	48956366	48956355	48956356	Frame_Shift_Del	TG	-	p.Q82fs
SKCM	TCGA-FW-A5DX-01	JAG2	ENST00000546616.1,ENST00000347004.2,ENST00000331782.3	chr14	105611266:105611398:105612067:105612310:105612721:105612837,	105612068	105612310	105612178	105612178	Frame_Shift_Del	C	-	p.E948fs
SKCM	TCGA-EE-A29N-06	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220806	29220806	Frame_Shift_Del	T	-	p.C1645fs
SKCM	TCGA-ER-A193-06	AGRN	ENST00000379370.2	chr1	979713:979819:980540:980657:980738:980903,	980541	980657	980604	980626	Frame_Shift_Del	GCTGCCAGGACAATATCACCGCA	-	p.CCQDNITA773fs
SKCM	TCGA-ER-A193-06	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21935342:21935429:21936067:21936139:21936612:21936717,	21936068	21936139	21936093	21936094	Frame_Shift_Ins	-	G	p.P349fs
SKCM	TCGA-EB-A3Y6-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53574633:53575234:53575919:53576466:53577626:53577729,	53575920	53576466	53576039	53576040	Frame_Shift_Ins	-	ACGC	p.-3306fs
SKCM	TCGA-WE-A8K6-06	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30862364:30862448:30863180:30863291:30864397:30864642,30862364:30862448:30863180:30863291:30864507:30864642,	30863181	30863291	30863250	30863251	Frame_Shift_Ins	-	C	p.A528fs
SKCM	TCGA-EE-A29G-06	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
SKCM	TCGA-EE-A29G-06	PHF5A	ENST00000491254.1,ENST00000216252.3	chr22	41856435:41856491:41863451:41863618:41864127:41864151,	41863452	41863618	41863532	41863532	Frame_Shift_Del	G	-	p.Q55fs
SKCM	TCGA-DA-A1IB-06	MOBP	ENST00000311042.6	chr3	39543705:39543766:39543953:39544367:39554873:39554938,	39543954	39544367	39543982	39543983	Frame_Shift_Ins	-	A	p.R79fs
SKCM	TCGA-ER-A19G-06	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41244539	41244540	Frame_Shift_Del	AA	-	p.F707fs
SKCM	TCGA-EE-A2GH-06	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871151	871151	Frame_Shift_Del	A	-	p.I446fs
SKCM	TCGA-EE-A2GH-06	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
SKCM	TCGA-EE-A2GR-06	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110085890	110085905	Frame_Shift_Del	CTGCCTGGTGGACCTG	-	p.LCLVDL82fs
SKCM	TCGA-EE-A2GR-06	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005416	47005416	Frame_Shift_Del	G	-	p.Y69fs
SKCM	TCGA-EE-A2GR-06	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005416	47005416	Frame_Shift_Del	G	-	p.Y69fs
SKCM	TCGA-XV-AAZV-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
SKCM	TCGA-XV-AAZV-01	SIRT2	ENST00000462654.1,ENST00000249396.7,ENST00000392081.2	chr19	39370073:39370140:39370271:39370342:39371324:39371376,	39370272	39370342	39370329	39370329	Frame_Shift_Del	A	-	p.L297fs
SKCM	TCGA-EE-A3AH-06	CENPL	ENST00000356198.2	chr1	173769549:173769657:173772100:173772643:173776404:173776448,173769549:173769657:173772100:173772643:173775576:173775714,	173772101	173772643	173772132	173772133	Frame_Shift_Del	AC	-	p.V357fs
SKCM	TCGA-EE-A3AH-06	MCPH1	ENST00000344683.5	chr8	6299587:6299677:6301913:6303068:6312663:6312773,	6301914	6303068	6302515	6302516	Frame_Shift_Ins	-	T	p.RF424fs
SKCM	TCGA-EE-A3AH-06	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690811	89690812	Frame_Shift_Del	AA	-	p.E73fs
SKCM	TCGA-EE-A3AH-06	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27751863	27751863	Frame_Shift_Del	G	-	p.G749fs
SKCM	TCGA-DA-A960-01	PSEN2	ENST00000422240.2,ENST00000366783.3,ENST00000496965.1,ENST00000366782.1,ENST00000495488.1,ENST00000391872.2,ENST00000340188.4	chr1	227069588:227069749:227071405:227071620:227073238:227073269,	227071406	227071620	227071481	227071481	Frame_Shift_Del	C	-	p.P106fs
SKCM	TCGA-DA-A960-01	FLII	ENST00000577485.1,ENST00000577398.2,ENST00000379450.4,ENST00000545457.2,ENST00000487369.1,ENST00000578101.1,ENST00000474265.1,ENST00000579294.1,ENST00000327031.4	chr17	18148868:18148974:18149057:18149164:18149247:18149282,	18149058	18149164	18149068	18149071	Frame_Shift_Del	GTGT	-	p.TR1164fs
SKCM	TCGA-D3-A8GP-06	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
SKCM	TCGA-D3-A8GP-06	USP53	ENST00000509769.1,ENST00000274030.6,ENST00000450251.1	chr4	120190845:120190992:120192450:120193189:120194786:120194863,	120192451	120193189	120192993	120192993	Frame_Shift_Del	G	-	p.G660fs
SKCM	TCGA-D3-A8GP-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971080	21971080	Frame_Shift_Del	G	-	p.H107fs
SKCM	TCGA-D3-A8GP-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971080	21971080	Frame_Shift_Del	G	-	p.H107fs
SKCM	TCGA-GN-A8LK-06	WDR6	ENST00000452875.1	chr3	49044835:49044964:49048853:49051549:49051642:49051726,	49048854	49051549	49050660	49050660	Frame_Shift_Del	T	-	p.S595fs
SKCM	TCGA-GN-A8LK-06	WDR6	ENST00000608424.1	chr3	49044835:49044964:49049067:49051549:49051642:49051726,	49049068	49051549	49050660	49050660	Frame_Shift_Del	T	-	p.S595fs
SKCM	TCGA-GN-A8LK-06	NF1	ENST00000358273.4,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29663350:29663491:29663652:29663932:29664385:29664600,	29663653	29663932	29663789	29663789	Frame_Shift_Del	A	-	p.D2095fs
SKCM	TCGA-D3-A51E-06	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50612194:50612314:50616725:50616948:50619787:50619891,	50616726	50616948	50616844	50616850	Frame_Shift_Del	GTGGACT	-	p.SPP754fs
SKCM	TCGA-D3-A51E-06	AMZ2	ENST00000359783.4	chr17	66246500:66246611:66247190:66247319:66250544:66250549,	66247191	66247319	66247278	66247290	Frame_Shift_Del	ACTCGTGGAATTT	-	p.DSWNF182fs
SKCM	TCGA-W3-AA1V-06	SETMAR	ENST00000425863.1	chr3	4345054:4345210:4354581:4354913:4355350:4355445,4345054:4345210:4354581:4354913:4355330:4355445,	4354582	4354913	4354905	4354906	Frame_Shift_Ins	-	AA	p.R161fs
SKCM	TCGA-W3-AA1V-06	ATP13A4	ENST00000428352.1,ENST00000342695.4,ENST00000295548.3,ENST00000490925.1,ENST00000450950.2	chr3	193180550:193180612:193182728:193182917:193183813:193183971,	193182729	193182917	193182812	193182812	Frame_Shift_Del	T	-	p.R460fs
SKCM	TCGA-W3-AA1V-06	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
SKCM	TCGA-W3-AA1V-06	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
SKCM	TCGA-W3-AA1V-06	C8orf59	ENST00000458398.2,ENST00000524353.1,ENST00000518091.1,ENST00000417663.2,ENST00000421308.2	chr8	86126790:86126860:86127149:86127266:86129614:86129731,	86127150	86127266	86127182	86127183	Frame_Shift_Del	TT	-	p.KS66fs
SKCM	TCGA-W3-AA1V-06	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3	chr9	119858322:119858430:119903604:119903757:119976636:119976832,	119903605	119903757	119903608	119903608	Frame_Shift_Del	G	-	p.R389fs
SKCM	TCGA-W3-AA1V-06	CD6	ENST00000538611.1,ENST00000344931.5,ENST00000452451.2,ENST00000313421.7,ENST00000545105.1	chr11	60778541:60778607:60780894:60781035:60781390:60781427,	60780895	60781035	60781021	60781021	Frame_Shift_Del	T	-	p.I426fs
SKCM	TCGA-W3-AA1V-06	CCDC88B	ENST00000359902.2	chr11	64121186:64121285:64121475:64121500:64122665:64122872,	64121476	64121500	64121493	64121493	Frame_Shift_Del	C	-	p.A1317fs
SKCM	TCGA-W3-AA1V-06	CCDC88B	ENST00000463837.1,ENST00000356786.5,ENST00000479965.1,ENST00000494080.1	chr11	64121186:64121285:64121475:64121642:64122665:64122872,	64121476	64121642	64121493	64121493	Frame_Shift_Del	C	-	p.A1317fs
SKCM	TCGA-EE-A29T-06	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32475300	32475300	Frame_Shift_Del	T	-	p.I545fs
SKCM	TCGA-EE-A29T-06	ZC3H18	ENST00000452588.2	chr16	88636885:88636974:88643517:88644134:88653007:88653092,	88643518	88644134	88643999	88643999	Frame_Shift_Del	G	-	p.E157fs
SKCM	TCGA-EE-A29T-06	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000435103.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123164810:123164975:123171376:123171473:123176418:123176495,	123171377	123171473	123171393	123171394	Frame_Shift_Ins	-	GATA	p.Y102fs
SKCM	TCGA-EE-A2GL-06	SEC24C	ENST00000465076.1,ENST00000345254.4	chr10	75506387:75506474:75506562:75506762:75510865:75511001,75504126:75504195:75506562:75506762:75519379:75519552,75504157:75504195:75506562:75506762:75510865:75511001,	75506563	75506762	75506612	75506612	Frame_Shift_Del	C	-	p.P9fs
SKCM	TCGA-LH-A9QB-06	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
SKCM	TCGA-FS-A1ZR-06	ABCB9	ENST00000541983.1,ENST00000542678.1,ENST00000442833.2,ENST00000392439.3,ENST00000344275.7,ENST00000542448.1,ENST00000538895.1,ENST00000442028.2,ENST00000280560.8,ENST00000545373.1	chr12	123424753:123424831:123425353:123425542:123430571:123430769,123424753:123424831:123425353:123425542:123428937:123429066,	123425354	123425542	123425520	123425520	Frame_Shift_Del	C	-	p.G468fs
SKCM	TCGA-3N-A9WD-06	FANCD2	ENST00000287647.3,ENST00000431693.1,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1,ENST00000438741.1	chr3	10077970:10078023:10080962:10081041:10081404:10081529,	10080963	10081041	10080989	10080995	Frame_Shift_Del	CTCGACT	-	p.PRL173fs
SKCM	TCGA-EE-A2GJ-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578267	7578267	Frame_Shift_Del	A	-	p.L194fs
SKCM	TCGA-IH-A3EA-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465991	59465992	Frame_Shift_Ins	-	A	p.E891fs
SKCM	TCGA-IH-A3EA-01	ATRN	ENST00000262919.5,ENST00000446916.2	chr20	3520868:3520982:3526408:3526537:3527930:3528136,	3526409	3526537	3526472	3526473	Frame_Shift_Ins	-	G	p.C225fs
SKCM	TCGA-BF-AAP6-01	MYL5	ENST00000513662.1,ENST00000400159.2,ENST00000503300.1,ENST00000506838.1,ENST00000511290.1,ENST00000505477.1	chr4	674297:674376:674880:674929:675681:675779,	674881	674929	674887	674888	Frame_Shift_Del	GC	-	p.KR85fs
SKCM	TCGA-BF-AAP6-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717699	89717699	Frame_Shift_Del	G	-	p.E242fs
SKCM	TCGA-D3-A2JD-06	MCOLN2	ENST00000463065.1,ENST00000531325.1,ENST00000370608.3,ENST00000284027.5	chr1	85418128:85418213:85422113:85422267:85424211:85424385,	85422114	85422267	85422148	85422149	Frame_Shift_Ins	-	T	p.R177fs
SKCM	TCGA-D3-A2JD-06	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97875417:97875446:97875536:97875609:97877282:97877311,	97875537	97875609	97875580	97875580	Frame_Shift_Del	A	-	p.E1113fs
SKCM	TCGA-D3-A2JD-06	EBF4	ENST00000469215.1,ENST00000497450.1,ENST00000609967.1,ENST00000342725.5,ENST00000449079.3,ENST00000609451.1,ENST00000380648.4	chr20	2674334:2674428:2686222:2686379:2686619:2686683,	2686223	2686379	2686263	2686263	Frame_Shift_Del	C	-	p.P56fs
SKCM	TCGA-EE-A29L-06	TFE3	ENST00000315869.7,ENST00000493583.1	chrX	48888025:48888112:48888911:48889059:48890979:48891055,	48888912	48889059	48888962	48888980	Frame_Shift_Del	GGCTCTCCAGGTCTTTGGA	-	p.SKDLESR406fs
SKCM	TCGA-EB-A3XB-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
SKCM	TCGA-EE-A2A1-06	EPHX2	ENST00000380476.3,ENST00000517536.1,ENST00000521780.1,ENST00000521400.1,ENST00000518379.1,ENST00000520623.1	chr8	27379939:27380025:27382878:27382990:27394300:27394372,	27382879	27382990	27382895	27382895	Frame_Shift_Del	A	-	p.N359fs
SKCM	TCGA-EE-A3AA-06	TRIM68	ENST00000533021.1	chr11	4624474:4624570:4626308:4626791:4629256:4629368,4623473:4623642:4626308:4626791:4629256:4629368,	4626309	4626791	4626492	4626492	Frame_Shift_Del	T	-	p.K81fs
SKCM	TCGA-EE-A3AA-06	NIN	ENST00000389868.3,ENST00000453196.1,ENST00000382041.3,ENST00000530997.2,ENST00000476352.1,ENST00000530853.1,ENST00000324330.9,ENST00000245441.5,ENST00000382043.4,ENST00000389869.3	chr14	51210133:51210247:51210960:51211083:51214709:51214823,	51210961	51211083	51210980	51210980	Frame_Shift_Del	A	-	p.L1723fs
SKCM	TCGA-EB-A5SH-06	CCT6A	ENST00000540286.1,ENST00000492618.1,ENST00000335503.3,ENST00000275603.4	chr7	56127961:56128109:56128499:56128633:56129439:56129542,	56128500	56128633	56128613	56128614	Frame_Shift_Ins	-	CATT	p.I443fs
SKCM	TCGA-WE-AAA0-06	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17700924	17700924	Frame_Shift_Del	G	-	p.K1554fs
SKCM	TCGA-D9-A6EC-06	ATP6V0D2	ENST00000285393.3	chr8	87155105:87155183:87162340:87162517:87163694:87163769,	87162341	87162517	87162450	87162450	Frame_Shift_Del	A	-	p.E250fs
SKCM	TCGA-D9-A6EC-06	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
SKCM	TCGA-D3-A5GN-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971122	21971123	Frame_Shift_Ins	-	T	p.P93fs
SKCM	TCGA-D3-A5GN-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971122	21971123	Frame_Shift_Ins	-	T	p.P93fs
SKCM	TCGA-D3-A5GN-06	PMM2	ENST00000268261.4,ENST00000562318.1,ENST00000539622.1,ENST00000566983.1	chr16	8895655:8895767:8904935:8905035:8905494:8905524,8900172:8900264:8904935:8905035:8905498:8905570,8900172:8900264:8904935:8905035:8905494:8905524,	8904936	8905035	8904969	8904969	Frame_Shift_Del	A	-	p.L127fs
SKCM	TCGA-D3-A2J8-06	CCDC30	ENST00000509712.1,ENST00000477155.1	chr1	43000559:43000660:43002146:43002272:43011080:43011250,	43002147	43002272	43002200	43002201	Frame_Shift_Del	AG	-	p.KE15fs
SKCM	TCGA-D3-A2J8-06	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1,ENST00000542215.1	chrX	41203282:41203381:41203491:41203652:41204432:41204577,	41203492	41203652	41203517	41203523	Frame_Shift_Del	CTTGCGT	-	p.PCV297fs
SKCM	TCGA-FS-A1ZC-06	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56471405	56471406	Frame_Shift_Ins	-	C	p.T2641fs
SKCM	TCGA-XV-AAZY-01	ISYNA1	ENST00000577820.1,ENST00000545187.1	chr19	18547190:18547289:18547493:18547687:18547782:18547915,18547190:18547289:18547493:18547687:18548669:18548798,	18547494	18547687	18547527	18547528	Frame_Shift_Del	CG	-	p.A42fs
SKCM	TCGA-EE-A2GI-06	RPL5	ENST00000370321.3,ENST00000315741.5	chr1	93300335:93300470:93301746:93301949:93303012:93303026,	93301747	93301949	93301759	93301759	Frame_Shift_Del	T	-	p.F113fs
SKCM	TCGA-EE-A2GI-06	VCAM1	ENST00000370119.4,ENST00000347652.2,ENST00000294728.2	chr1	101196753:101197074:101197973:101198240:101200057:101200324,	101197974	101198240	101198228	101198228	Frame_Shift_Del	T	-	p.L594fs
SKCM	TCGA-EE-A2GI-06	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103439	168103440	Frame_Shift_Ins	-	T	p.I1846fs
SKCM	TCGA-EE-A2GI-06	LMTK2	ENST00000297293.5	chr7	97820039:97820189:97820925:97823884:97832885:97833018,	97820926	97823884	97822735	97822736	Frame_Shift_Ins	-	T	p.P987fs
SKCM	TCGA-FS-A4FC-06	KDSR	ENST00000585750.1	chr18	61011642:61011726:61018120:61018310:61022436:61022532,	61018121	61018310	61018162	61018163	Frame_Shift_Ins	-	G	p.V190fs
SKCM	TCGA-FS-A4FC-06	KDSR	ENST00000406396.3,ENST00000591902.1	chr18	61011642:61011726:61018120:61018312:61022436:61022532,	61018121	61018312	61018162	61018163	Frame_Shift_Ins	-	G	p.V190fs
SKCM	TCGA-EE-A2M5-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971173	21971186	Frame_Shift_Del	AGCTCCGCCACTCG	-	p.PSGGA72fs
SKCM	TCGA-EE-A2M5-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971173	21971186	Frame_Shift_Del	AGCTCCGCCACTCG	-	p.PSGGA72fs
SKCM	TCGA-EE-A2M5-06	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203954	135203958	Frame_Shift_Del	CACGG	-	p.SRG1009fs
SKCM	TCGA-DA-A3F8-06	NDRG1	ENST00000518010.1,ENST00000522377.1,ENST00000517599.1,ENST00000537882.1,ENST00000354944.5	chr8	134292474:134292510:134296491:134296572:134309376:134309480,	134296492	134296572	134296497	134296498	Frame_Shift_Del	CT	-	p.KG19fs
SKCM	TCGA-DA-A3F8-06	RPL38	ENST00000533498.1,ENST00000439590.2,ENST00000311111.6	chr17	72200268:72200329:72205325:72205448:72205942:72206019,	72205326	72205448	72205441	72205442	Frame_Shift_Ins	-	C	p.LP60fs
SKCM	TCGA-GN-A26D-06	KBTBD12	ENST00000343941.4,ENST00000407609.3,ENST00000492025.1,ENST00000405109.1,ENST00000405256.1	chr3	127648975:127649126:127682031:127682229:127702939:127703141,	127682032	127682229	127682078	127682078	Frame_Shift_Del	C	-	p.C513fs
SKCM	TCGA-GN-A26D-06	NAALADL2	ENST00000454872.1	chr3	175455093:175455187:175473007:175473206:175520792:175523428,	175473008	175473206	175473198	175473198	Frame_Shift_Del	T	-	p.G727fs
SKCM	TCGA-GN-A26D-06	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
SKCM	TCGA-GN-A26D-06	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
SKCM	TCGA-ER-A19T-06	ACOXL	ENST00000441974.1	chr2	111753533:111753581:111789203:111789291:111806794:111806865,111753533:111753581:111789203:111789291:111850441:111850543,	111789204	111789291	111789223	111789224	Frame_Shift_Ins	-	T	p.V464fs
SKCM	TCGA-ER-A19T-06	PPFIBP2	ENST00000528883.1,ENST00000299492.4,ENST00000530181.1,ENST00000530582.1,ENST00000533792.1	chr11	7672070:7672196:7672886:7673075:7674254:7674431,	7672887	7673075	7672899	7672899	Frame_Shift_Del	C	-	p.R754fs
SKCM	TCGA-ER-A19T-01	TEKT4	ENST00000468063.1,ENST00000295201.4	chr2	95539264:95539335:95539709:95539853:95540520:95540743,	95539710	95539853	95539829	95539830	Frame_Shift_Ins	-	G	p.L230fs
SKCM	TCGA-ER-A19T-01	EFTUD2	ENST00000589769.1,ENST00000591382.1,ENST00000592576.1,ENST00000402521.3,ENST00000590367.1,ENST00000590977.1,ENST00000426333.2,ENST00000586276.1	chr17	42928624:42928737:42929077:42929185:42929776:42929930,	42929078	42929185	42929088	42929089	Frame_Shift_Ins	-	G	p.P938fs
SKCM	TCGA-ER-A3ES-06	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88486457:88486609:88487546:88487752:88490664:88490776,	88487547	88487752	88487681	88487681	Frame_Shift_Del	T	-	p.I1059fs
SKCM	TCGA-W3-A828-06	TRPV5	ENST00000439304.1,ENST00000442623.1	chr7	142627152:142627275:142627443:142627541:142630428:142630538,	142627444	142627541	142627446	142627446	Frame_Shift_Del	C	-	p.R75fs
SKCM	TCGA-W3-A828-06	SYT8	ENST00000464897.1,ENST00000479276.1,ENST00000424556.2,ENST00000381978.3,ENST00000490707.1,ENST00000341958.3,ENST00000381968.3,ENST00000535046.1	chr11	1857985:1858091:1858186:1858320:1858421:1858487,	1858187	1858320	1858233	1858233	Frame_Shift_Del	G	-	p.K280fs
SKCM	TCGA-W3-A828-06	RIC8B	ENST00000548914.1,ENST00000470628.2,ENST00000470960.1,ENST00000392839.2,ENST00000355478.2,ENST00000462949.1,ENST00000392837.4	chr12	107219503:107219598:107236366:107236595:107237629:107237725,	107236367	107236595	107236475	107236479	Frame_Shift_Del	GCCCA	-	p.LPS315fs
SKCM	TCGA-EE-A20C-06	PKHD1L1	ENST00000378402.5	chr8	110376775:110376865:110393598:110393743:110394691:110394800,	110393599	110393743	110393720	110393729	Frame_Shift_Del	AACTCAAATT	-	p.STQI95fs
SKCM	TCGA-EE-A20C-06	ENKUR	ENST00000483339.2	chr10	25279391:25279538:25284574:25284798:25304788:25304889,	25284575	25284798	25284707	25284707	Frame_Shift_Del	A	-	p.F105fs
SKCM	TCGA-EE-A20C-06	SPI1	ENST00000378538.3,ENST00000227163.4	chr11	47376651:47377097:47380394:47380557:47381403:47381591,	47380395	47380557	47380542	47380542	Frame_Shift_Del	G	-	p.R116fs
SKCM	TCGA-EE-A20C-06	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347832	89347832	Frame_Shift_Del	A	-	p.P1706fs
SKCM	TCGA-EE-A20C-06	TMIGD1	ENST00000328886.4	chr17	28644210:28644251:28645827:28645931:28651833:28652112,	28645828	28645931	28645885	28645894	Frame_Shift_Del	AACACATGCA	-	p.AACV226fs
SKCM	TCGA-ER-A2NB-01	RCC2	ENST00000375433.3,ENST00000375436.4	chr1	17742975:17743142:17747209:17747324:17748698:17748787,	17747210	17747324	17747311	17747311	Frame_Shift_Del	C	-	p.G253fs
SKCM	TCGA-ER-A2NB-01	CCDC30	ENST00000509712.1,ENST00000477155.1	chr1	43000559:43000660:43002146:43002272:43011080:43011250,	43002147	43002272	43002200	43002201	Frame_Shift_Del	AG	-	p.KE15fs
SKCM	TCGA-ER-A2NB-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589601	Frame_Shift_Del	T	-	p.S277fs
SKCM	TCGA-EE-A2GN-06	ATM	ENST00000452508.2,ENST00000278616.4,ENST00000527805.1	chr11	108099904:108100050:108106396:108106561:108114679:108114811,	108106397	108106561	108106555	108106556	Frame_Shift_Ins	-	GGTTA	p.V164fs
SKCM	TCGA-EE-A2GN-06	BRD7	ENST00000394689.2,ENST00000394688.3	chr16	50355892:50355949:50357497:50357609:50359658:50359766,	50357498	50357609	50357594	50357595	Frame_Shift_Ins	-	A	p.C449fs
SKCM	TCGA-D3-A8GI-06	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071871	197071871	Frame_Shift_Del	A	-	p.V2170fs
SKCM	TCGA-D3-A8GI-06	SH2D3C	ENST00000373274.3,ENST00000429553.1,ENST00000314830.8,ENST00000373277.4,ENST00000373276.3,ENST00000420366.1	chr9	130500597:130501200:130501960:130502167:130502536:130502648,	130501961	130502167	130502090	130502091	Frame_Shift_Ins	-	T	p.R760fs
SKCM	TCGA-D3-A8GI-06	DHTKD1	ENST00000263035.4	chr10	12129533:12129728:12136071:12136270:12139682:12139957,12133511:12133683:12136071:12136270:12139682:12139957,	12136072	12136270	12136132	12136132	Frame_Shift_Del	G	-	p.R407fs
SKCM	TCGA-D3-A8GI-06	DIP2A	ENST00000400274.1,ENST00000435722.3,ENST00000457905.3,ENST00000427143.2,ENST00000417564.2,ENST00000318711.7,ENST00000494435.1,ENST00000466639.1,ENST00000473752.1	chr21	47957358:47957452:47958395:47958515:47959789:47959904,	47958396	47958515	47958434	47958435	Frame_Shift_Del	TC	-	p.S615fs
SKCM	TCGA-D3-A5GS-06	CBFA2T2	ENST00000397798.2,ENST00000492345.1,ENST00000346541.3,ENST00000344201.3,ENST00000342704.6,ENST00000359606.3,ENST00000375279.2,ENST00000397800.1	chr20	32198903:32199141:32207322:32207412:32210920:32211102,	32207323	32207412	32207397	32207397	Frame_Shift_Del	G	-	p.V174fs
SKCM	TCGA-EE-A2MI-06	ARIH2	ENST00000490095.1,ENST00000356401.4,ENST00000449376.1,ENST00000452385.1	chr3	49005966:49006088:49008027:49008137:49011131:49011249,	49008028	49008137	49008031	49008031	Frame_Shift_Del	C	-	p.H222fs
SKCM	TCGA-EE-A2MI-06	ARIH2	ENST00000465217.1	chr3	49005966:49006088:49008027:49008274:49011131:49011249,	49008028	49008274	49008031	49008031	Frame_Shift_Del	C	-	p.H222fs
SKCM	TCGA-EE-A2MI-06	SRP72	ENST00000510663.1,ENST00000342756.5	chr4	57344757:57344815:57350901:57351030:57352490:57352563,57349304:57349436:57350901:57351030:57352490:57352563,	57350902	57351030	57350909	57350909	Frame_Shift_Del	A	-	p.Q322fs
SKCM	TCGA-EE-A2MI-06	LMBR1	ENST00000461469.1,ENST00000540390.1,ENST00000444719.1,ENST00000434278.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1	chr7	156556396:156556489:156589082:156589186:156619298:156619438,	156589083	156589186	156589158	156589158	Frame_Shift_Del	G	-	p.S116fs
SKCM	TCGA-D3-A3C6-06	VRK2	ENST00000432057.1,ENST00000435505.2,ENST00000440705.2,ENST00000412104.2,ENST00000417641.2,ENST00000340157.4	chr2	58311223:58311273:58312015:58312085:58313473:58313561,	58312016	58312085	58312026	58312026	Frame_Shift_Del	A	-	p.E66fs
SKCM	TCGA-D3-A3C6-06	PNN	ENST00000216832.4	chr14	39646615:39646688:39646796:39646891:39647044:39647120,	39646797	39646891	39646845	39646866	Frame_Shift_Del	AGAGACCTTATCCAGGATCAAA	-	p.RDLIQDQN126fs
SKCM	TCGA-FS-A1ZD-06	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
SKCM	TCGA-FS-A1ZD-06	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182564	59182565	Frame_Shift_Del	CT	-	p.E665fs
SKCM	TCGA-GN-A4U5-01	ITSN1	ENST00000399367.3,ENST00000399326.3,ENST00000381285.4,ENST00000381318.3	chr21	35247663:35247825:35254546:35254759:35255853:35255975,	35254547	35254759	35254658	35254658	Frame_Shift_Del	G	-	p.D1485fs
SKCM	TCGA-EE-A3AC-06	ARHGAP15	ENST00000295095.6	chr2	144381701:144381836:144460987:144461093:144525557:144525917,	144460988	144461093	144461039	144461040	Frame_Shift_Ins	-	ACTC	p.T397fs
SKCM	TCGA-D3-A2JF-06	ARHGAP17	ENST00000303665.5	chr16	24942104:24942725:24946790:24946960:24950684:24950918,24942104:24942725:24946790:24946960:24953307:24953464,	24946791	24946960	24946954	24946954	Frame_Shift_Del	G	-	p.P577fs
SKCM	TCGA-D3-A5GR-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971053	21971054	Frame_Shift_Ins	-	C	p.G116fs
SKCM	TCGA-D3-A5GR-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971053	21971054	Frame_Shift_Ins	-	C	p.G116fs
SKCM	TCGA-D3-A5GR-06	CYP2C19	ENST00000464755.1,ENST00000371321.3	chr10	96541577:96541754:96580252:96580394:96602593:96602781,	96580253	96580394	96580325	96580325	Frame_Shift_Del	G	-	p.G298fs
SKCM	TCGA-EB-A550-01	KCTD13	ENST00000568995.1	chr16	29918283:29918429:29922298:29922494:29923135:29923188,29917673:29917887:29922298:29922494:29923135:29923188,	29922299	29922494	29922437	29922437	Frame_Shift_Del	G	-	p.R205fs
SKCM	TCGA-D9-A6EG-06	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
SKCM	TCGA-EB-A44O-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971092	21971096	Frame_Shift_Del	CCCTC	-	p.GG102fs
SKCM	TCGA-EB-A44O-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971092	21971096	Frame_Shift_Del	CCCTC	-	p.GG102fs
SKCM	TCGA-RP-A690-06	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472300	77472300	Frame_Shift_Del	T	-	p.T658fs
SKCM	TCGA-EE-A2MM-06	CCNG1	ENST00000393929.1,ENST00000340828.2,ENST00000511490.2	chr5	162864799:162864810:162866262:162866526:162868083:162868163,	162866263	162866526	162866446	162866447	Frame_Shift_Ins	-	TA	p.N62fs
SKCM	TCGA-EE-A2MM-06	BANP	ENST00000393207.1,ENST00000393208.2,ENST00000479780.2,ENST00000355163.5,ENST00000538234.1,ENST00000355022.4,ENST00000286122.7	chr16	88039695:88039871:88052033:88052273:88061088:88061256,	88052034	88052273	88052139	88052139	Frame_Shift_Del	G	-	p.R246fs
SKCM	TCGA-FR-A69P-06	ATP2A3	ENST00000397039.1,ENST00000359983.3,ENST00000352011.3,ENST00000574202.1,ENST00000309890.7,ENST00000397035.3,ENST00000397043.3	chr17	3856640:3856723:3856986:3857004:3867467:3867530,	3856987	3857004	3856998	3856998	Frame_Shift_Del	G	-	p.P42fs
SKCM	TCGA-EE-A2A6-06	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170591984	170591996	Frame_Shift_Del	CTAGAGAAGGAAT	-	p.LEKES154fs
SKCM	TCGA-YD-A9TA-06	ATN1	ENST00000356654.4,ENST00000396684.2	chr12	7047007:7047230:7047643:7048340:7050042:7050186,	7047644	7048340	7047742	7047743	Frame_Shift_Ins	-	C	p.VP872fs
SKCM	TCGA-YD-A9TA-06	ITGBL1	ENST00000490242.2,ENST00000376180.3,ENST00000376162.3,ENST00000545560.2	chr13	102250502:102250649:102344934:102345051:102359105:102359252,	102344935	102345051	102345021	102345037	Frame_Shift_Del	TGTGAAGACCTCGATGG	-	p.CEDLDG368fs
SKCM	TCGA-WE-AAA3-06	RPS21	ENST00000343986.4	chr20	60962907:60962970:60963364:60963420:60963512:60963575,	60963365	60963420	60963388	60963388	Frame_Shift_Del	C	-	p.L70fs
SKCM	TCGA-D3-A8GO-06	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903786	5903786	Frame_Shift_Del	C	-	p.Y332fs
SKCM	TCGA-EB-A430-01	FAXC	ENST00000480148.1	chr6	99781226:99781423:99790773:99790909:99796982:99797104,	99790774	99790909	99790802	99790803	Frame_Shift_Ins	-	A	p.F125fs
SKCM	TCGA-DA-A95X-06	DHX32	ENST00000415732.1	chr10	127555697:127555752:127569111:127569640:127584786:127585005,	127569112	127569640	127569240	127569240	Frame_Shift_Del	A	-	p.Y53fs
SKCM	TCGA-ER-A2NF-06	NTN5	ENST00000600468.1	chr19	49167835:49168024:49173612:49174263:49176188:49176264,	49173613	49174263	49173724	49173724	Frame_Shift_Del	G	-	p.R174fs
SKCM	TCGA-GN-A4U8-06	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
SKCM	TCGA-GN-A4U8-06	TACC3	ENST00000313288.4	chr4	1741685:1741729:1742552:1742713:1746244:1746351,	1742553	1742713	1742685	1742688	Frame_Shift_Del	AGAA	-	p.QK732fs
SKCM	TCGA-EB-A41B-01	PLG	ENST00000308192.9	chr6	161137676:161137795:161139325:161139488:161139724:161139870,	161139326	161139488	161139418	161139419	Frame_Shift_Del	CA	-	p.H294fs
SKCM	TCGA-EB-A5UN-06	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610608	52610609	Frame_Shift_Ins	-	T	p.S1182fs
SKCM	TCGA-EB-A5UN-06	SLC30A5	ENST00000396591.3,ENST00000507354.1	chr5	68412350:68412429:68413065:68413223:68414325:68414455,	68413066	68413223	68413171	68413172	Frame_Shift_Ins	-	T	p.F463fs
SKCM	TCGA-EE-A3J5-06	SPRYD3	ENST00000547837.1,ENST00000301463.4,ENST00000550564.1	chr12	53462074:53462088:53467069:53467255:53468432:53468568,	53467070	53467255	53467119	53467119	Frame_Shift_Del	C	-	p.S215fs
SKCM	TCGA-EE-A2ME-06	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20413952	20413952	Frame_Shift_Del	T	-	p.R298fs
SKCM	TCGA-EE-A2ME-06	RAPGEF3	ENST00000171000.4,ENST00000548434.1,ENST00000395360.2,ENST00000547856.1,ENST00000405493.2,ENST00000389212.3,ENST00000549151.1,ENST00000449771.2,ENST00000488250.1	chr12	48134087:48134178:48134424:48134606:48134697:48134823,	48134425	48134606	48134465	48134465	Frame_Shift_Del	G	-	p.R689fs
SKCM	TCGA-FR-A8YC-06	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
SKCM	TCGA-FR-A8YC-06	MFN1	ENST00000263969.5,ENST00000471841.1,ENST00000474903.1,ENST00000280653.7	chr3	179093007:179093129:179094829:179094956:179095131:179095220,	179094830	179094956	179094917	179094918	Frame_Shift_Ins	-	A	p.KK395fs
SKCM	TCGA-FR-A8YC-06	MAST4	ENST00000436277.1	chr5	66300482:66300519:66300779:66300913:66350231:66350320,	66300780	66300913	66300881	66300882	Frame_Shift_Ins	-	A	p.E21fs
SKCM	TCGA-FR-A8YC-06	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220775	29220776	Frame_Shift_Ins	-	A	p.E1635fs
SKCM	TCGA-FR-A8YC-06	RPL38	ENST00000533498.1,ENST00000439590.2,ENST00000311111.6	chr17	72200268:72200329:72205325:72205448:72205942:72206019,	72205326	72205448	72205441	72205442	Frame_Shift_Ins	-	C	p.LP60fs
SKCM	TCGA-DA-A95V-06	CAMK2B	ENST00000395749.2,ENST00000489429.1	chr7	44260424:44260500:44266114:44266243:44268394:44268523,	44266115	44266243	44266158	44266159	Frame_Shift_Ins	-	G	p.P518fs
SKCM	TCGA-EB-A24D-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.K313fs
SKCM	TCGA-EB-A24D-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.K313fs
SKCM	TCGA-DA-A3F5-06	EFHC2	ENST00000343571.3,ENST00000420999.1	chrX	44007910:44008142:44023167:44023273:44035537:44035630,	44023168	44023273	44023191	44023191	Frame_Shift_Del	G	-	p.Q709fs
SKCM	TCGA-W3-AA1O-06	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589610	160589610	Frame_Shift_Del	C	-	p.E274fs
SKCM	TCGA-D3-A2JB-06	ZC2HC1A	ENST00000521176.1,ENST00000263849.4	chr8	79590797:79590914:79598701:79598843:79601456:79601608,	79598702	79598843	79598774	79598775	Frame_Shift_Del	AA	-	p.K95fs
SKCM	TCGA-EE-A181-06	BRDT	ENST00000427104.1	chr1	92415861:92416031:92428274:92428503:92430183:92430279,	92428275	92428503	92428378	92428378	Frame_Shift_Del	A	-	p.K24fs
SKCM	TCGA-EE-A181-06	SLC29A2	ENST00000357440.2,ENST00000544554.1,ENST00000311161.7,ENST00000540386.1,ENST00000541567.1,ENST00000546034.1	chr11	66129993:66131018:66131695:66131895:66133406:66133492,	66131696	66131895	66131787	66131788	Frame_Shift_Del	AG	-	p.LF389fs
SKCM	TCGA-EE-A181-06	B4GALT6	ENST00000237019.7,ENST00000306851.5	chr18	29210921:29211109:29225317:29225442:29237938:29238052,29218606:29218723:29225317:29225442:29237938:29238052,	29225318	29225442	29225354	29225355	Frame_Shift_Ins	-	C	p.A145fs
SKCM	TCGA-EE-A181-06	ZBP1	ENST00000343535.4,ENST00000371173.3,ENST00000340462.4,ENST00000395822.3	chr20	56185204:56185423:56186782:56186986:56188218:56188386,	56186783	56186986	56186960	56186960	Frame_Shift_Del	A	-	p.S210fs
SKCM	TCGA-EE-A181-06	ARFGAP1	ENST00000370275.4,ENST00000520485.1,ENST00000519604.1,ENST00000370283.4,ENST00000522403.2,ENST00000353546.3,ENST00000547204.1,ENST00000519273.2,ENST00000549047.1,ENST00000519531.1	chr20	61910250:61910347:61912642:61912699:61914170:61914203,	61912643	61912699	61912694	61912695	Frame_Shift_Ins	-	A	p.G227fs
SKCM	TCGA-ER-A199-06	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
SKCM	TCGA-DA-A1I5-06	ERBB3	ENST00000415288.2,ENST00000450146.2,ENST00000553131.1,ENST00000551085.1,ENST00000267101.3	chr12	56490531:56490630:56490828:56491014:56491568:56491724,	56490829	56491014	56490961	56490962	Frame_Shift_Ins	-	G	p.G803fs
SKCM	TCGA-ER-A3EV-06	DLC1	ENST00000276297.4,ENST00000510318.1,ENST00000512044.2,ENST00000520226.1,ENST00000358919.2	chr8	12943798:12943972:12945995:12946213:12947760:12947979,	12945996	12946213	12946210	12946211	Frame_Shift_Ins	-	CA	p.R1360fs
SKCM	TCGA-GN-A262-06	TRPT1	ENST00000536234.1	chr11	63992970:63993052:63993257:63993341:63993521:63993613,63992970:63993052:63993257:63993341:63993662:63993705,	63993258	63993341	63993265	63993265	Frame_Shift_Del	C	-	p.R23fs
SKCM	TCGA-FR-A7UA-06	KLHL23	ENST00000392647.2	chr2	170590355:170590597:170591522:170592737:170597894:170598047,	170591523	170592737	170591908	170591909	Frame_Shift_Ins	-	T	p.RF128fs
SKCM	TCGA-EE-A2GB-06	RIMS1	ENST00000524197.1,ENST00000520567.1,ENST00000264839.7,ENST00000453976.2,ENST00000522291.1,ENST00000518273.1,ENST00000517960.1,ENST00000521978.1,ENST00000491071.2,ENST00000370419.2,ENST00000348717.5,ENST00000517433.1,ENST00000401910.3,ENST00000517827.1,ENST00000523963.1,ENST00000425662.2	chr6	72947525:72947625:72952016:72952140:72955517:72955564,	72952017	72952140	72952079	72952079	Frame_Shift_Del	A	-	p.N674fs
SKCM	TCGA-FW-A3R5-06	NR1H4	ENST00000321046.5,ENST00000548884.1,ENST00000392986.3	chr12	100887078:100887180:100904555:100904921:100926235:100926376,	100904556	100904921	100904848	100904852	Frame_Shift_Del	TGAGC	-	p.DEL124fs
SKCM	TCGA-FW-A3R5-06	KLK12	ENST00000531374.1	chr19	51534114:51534177:51535035:51535391:51537235:51537395,	51535036	51535391	51535204	51535204	Frame_Shift_Del	G	-	p.L129fs
SKCM	TCGA-FW-A3R5-06	KLK12	ENST00000319590.4,ENST00000525263.1,ENST00000250351.4	chr19	51534114:51534177:51535131:51535391:51537235:51537395,	51535132	51535391	51535204	51535204	Frame_Shift_Del	G	-	p.L129fs
SKCM	TCGA-D3-A1Q4-06	SLC35F5	ENST00000409106.1,ENST00000245680.2	chr2	114493353:114493435:114500268:114500456:114501289:114501371,	114500269	114500456	114500277	114500277	Frame_Shift_Del	A	-	p.C248fs
SKCM	TCGA-D3-A2JP-06	RBFOX2	ENST00000359369.4	chr22	36142519:36142608:36152151:36152191:36155934:36156040,36146472:36146504:36152151:36152191:36155934:36156067,	36152152	36152191	36152169	36152169	Frame_Shift_Del	A	-	p.Y307fs
SKCM	TCGA-BF-A3DL-01	LCN10	ENST00000527229.1	chr9	139634401:139634500:139635703:139635813:139636332:139636472,	139635704	139635813	139635711	139635712	Frame_Shift_Ins	-	T	p.R120fs
SKCM	TCGA-BF-A3DL-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84779250	84779250	Frame_Shift_Del	C	-	p.S388fs
SKCM	TCGA-ER-A42H-01	SUCLG1	ENST00000487809.1,ENST00000393868.2	chr2	84652538:84652727:84658631:84658783:84660475:84660559,	84658632	84658783	84658735	84658736	Frame_Shift_Del	TC	-	p.E241fs
SKCM	TCGA-ER-A42H-01	VIL1	ENST00000454069.1	chr2	219288999:219289074:219290337:219290522:219292687:219292796,	219290338	219290522	219290373	219290379	Frame_Shift_Del	CCACTAC	-	p.IHY62fs
SKCM	TCGA-ER-A42H-01	VIL1	ENST00000440053.1,ENST00000248444.5	chr2	219288999:219289074:219290337:219290534:219292687:219292796,	219290338	219290534	219290373	219290379	Frame_Shift_Del	CCACTAC	-	p.IHY62fs
SKCM	TCGA-ER-A42H-01	MTIF3	ENST00000461838.1,ENST00000381116.1,ENST00000405591.2,ENST00000431572.2,ENST00000381120.3	chr13	28009820:28010030:28011252:28011410:28014125:28014586,	28011253	28011410	28011285	28011288	Frame_Shift_Del	CTTT	-	p.KG195fs
SKCM	TCGA-FR-A728-01	FLAD1	ENST00000368433.1,ENST00000368432.1,ENST00000315144.10,ENST00000292180.3,ENST00000368428.1	chr1	154961252:154961325:154962035:154962183:154962634:154962733,	154962036	154962183	154962050	154962050	Frame_Shift_Del	A	-	p.K379fs
SKCM	TCGA-GN-A9SD-06	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
SKCM	TCGA-GF-A4EO-06	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57092970:57093160:57094656:57094785:57105775:57105940,	57094657	57094785	57094671	57094672	Frame_Shift_Ins	-	GACA	p.D669fs
SKCM	TCGA-GF-A4EO-06	FAM210A	ENST00000592976.1,ENST00000402563.1	chr18	13666492:13666712:13681603:13682104:13726327:13726504,13671910:13671972:13681603:13682104:13687741:13687881,13671920:13671972:13681603:13682104:13726327:13726504,	13681604	13682104	13681830	13681833	Frame_Shift_Del	GGCG	-	p.RH82fs
SKCM	TCGA-W3-A824-06	TPO	ENST00000497517.2	chr2	1500366:1500537:1507719:1507851:1520654:1520751,1497573:1497811:1507719:1507851:1520654:1520751,	1507720	1507851	1507748	1507748	Frame_Shift_Del	C	-	p.H805fs
SKCM	TCGA-W3-A824-06	SPATS2L	ENST00000409140.3,ENST00000358677.5,ENST00000409385.1,ENST00000409397.2,ENST00000409988.3,ENST00000360760.5,ENST00000451764.2,ENST00000409718.1,ENST00000409755.3,ENST00000409151.1	chr2	201324491:201324550:201332012:201332122:201334636:201334683,	201332013	201332122	201332120	201332120	Frame_Shift_Del	A	-	p.K319fs
SKCM	TCGA-W3-A824-06	PHIP	ENST00000479165.1,ENST00000275034.4	chr6	79679551:79679634:79679765:79679890:79680497:79680605,	79679766	79679890	79679825	79679825	Frame_Shift_Del	A	-	p.L1021fs
SKCM	TCGA-W3-A824-06	POR	ENST00000454934.1,ENST00000496888.1,ENST00000450476.1,ENST00000545601.1,ENST00000419840.1,ENST00000461988.1,ENST00000439269.1,ENST00000447222.1,ENST00000394893.1	chr7	75614094:75614276:75614375:75614525:75614896:75615031,	75614376	75614525	75614451	75614451	Frame_Shift_Del	C	-	p.P443fs
SKCM	TCGA-W3-A824-06	JPH1	ENST00000519947.1,ENST00000342232.4	chr8	75149467:75149538:75156763:75157410:75171619:75171738,	75156764	75157410	75157084	75157084	Frame_Shift_Del	G	-	p.Q529fs
SKCM	TCGA-W3-A824-06	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685289	89685289	Frame_Shift_Del	A	-	p.K62fs
SKCM	TCGA-W3-A824-06	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509009	27509009	Frame_Shift_Del	T	-	p.S767fs
SKCM	TCGA-W3-A824-06	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696624	17696624	Frame_Shift_Del	G	-	p.W121fs
SKCM	TCGA-W3-A824-06	MAPT	ENST00000570299.1,ENST00000334239.8,ENST00000446361.3	chr17	44049224:44049311:44055740:44055806:44064405:44064461,44039703:44039836:44055740:44055806:44064405:44064461,	44055741	44055806	44055765	44055765	Frame_Shift_Del	C	-	p.T111fs
SKCM	TCGA-W3-A824-06	PCNA	ENST00000379143.5,ENST00000379160.3	chr20	5098115:5098310:5099255:5099323:5099414:5099512,	5099256	5099323	5099313	5099314	Frame_Shift_Del	TT	-	p.K110fs
SKCM	TCGA-EB-A85J-01	USF1	ENST00000496363.1,ENST00000534633.1,ENST00000368020.1,ENST00000368021.3,ENST00000435396.1,ENST00000473969.2	chr1	161011179:161011201:161011440:161011636:161011905:161012007,	161011441	161011636	161011505	161011506	Frame_Shift_Ins	-	AG	p.S136fs
SKCM	TCGA-EB-A41A-01	CHD4	ENST00000309577.6,ENST00000544484.1,ENST00000357008.2,ENST00000544040.1,ENST00000545942.1	chr12	6709700:6709835:6710091:6710219:6710454:6710696,	6710092	6710219	6710107	6710108	Frame_Shift_Ins	-	T	p.T304fs
SKCM	TCGA-BF-A5ES-01	PAXIP1	ENST00000473219.1,ENST00000404141.1,ENST00000475066.1,ENST00000397192.1,ENST00000457196.1	chr7	154760758:154760836:154767405:154768041:154774928:154775042,	154767406	154768041	154767776	154767777	Frame_Shift_Ins	-	A	p.T235fs
SKCM	TCGA-EE-A29D-06	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859263	48859264	Frame_Shift_Ins	-	A	p.K194fs
SKCM	TCGA-EE-A29D-06	FAM124A	ENST00000322475.8	chr13	51805483:51805515:51825603:51826337:51854585:51855616,	51825604	51826337	51825779	51825780	Frame_Shift_Ins	-	C	p.NP92fs
SKCM	TCGA-EE-A29D-06	AKT2	ENST00000311278.6	chr19	40741169:40741257:40741796:40742011:40742163:40742292,40741169:40741257:40741796:40742011:40743875:40743973,	40741797	40742011	40741920	40741920	Frame_Shift_Del	T	-	p.Y351fs
SKCM	TCGA-EE-A29D-06	AKT2	ENST00000496089.2	chr19	40741169:40741257:40741796:40742292:40743875:40743973,	40741797	40742292	40741920	40741920	Frame_Shift_Del	T	-	p.Y351fs
SKCM	TCGA-OD-A75X-06	DYM	ENST00000581738.1,ENST00000269445.6,ENST00000584983.1,ENST00000583280.1,ENST00000580615.1	chr18	46812866:46812986:46858233:46858376:46860097:46860223,	46858234	46858376	46858341	46858341	Frame_Shift_Del	A	-	p.L219fs
SKCM	TCGA-BF-A1PV-01	ZFX	ENST00000379177.1,ENST00000304543.5,ENST00000540034.1,ENST00000379188.3	chrX	24197299:24197887:24225442:24225592:24225828:24225972,	24225443	24225592	24225559	24225560	Frame_Shift_Ins	-	T	p.F255fs
SKCM	TCGA-FR-A3YN-06	CCDC125	ENST00000396499.1,ENST00000396496.2	chr5	68606944:68607031:68609811:68609873:68616063:68616172,	68609812	68609873	68609835	68609847	Frame_Shift_Del	GCCTTAATTCTTC	-	p.EELRQ111fs
SKCM	TCGA-FR-A3YN-06	CCDC125	ENST00000511257.1,ENST00000383374.2	chr5	68606944:68607031:68609811:68609870:68616063:68616172,	68609812	68609870	68609835	68609847	Frame_Shift_Del	GCCTTAATTCTTC	-	p.EELRQ111fs
SKCM	TCGA-FR-A3YN-06	PABPC1	ENST00000519100.1,ENST00000318607.5,ENST00000519622.1,ENST00000519596.1,ENST00000519004.1,ENST00000522387.1	chr8	101724609:101724685:101724879:101725017:101725314:101725409,	101724880	101725017	101724994	101724995	Frame_Shift_Ins	-	A	p.R254fs
SKCM	TCGA-FR-A3YN-06	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452518	58452519	Frame_Shift_Ins	-	T	p.I1024fs
SKCM	TCGA-EE-A3AG-06	ESPN	ENST00000418286.1	chr1	6500437:6500500:6500718:6500868:6500993:6501125,	6500719	6500868	6500831	6500831	Frame_Shift_Del	C	-	p.T274fs
SKCM	TCGA-EE-A3AG-06	ESPN	ENST00000377828.1	chr1	6500437:6500500:6500685:6500868:6500993:6501125,	6500686	6500868	6500831	6500831	Frame_Shift_Del	C	-	p.T274fs
SKCM	TCGA-EE-A3AG-06	SPRYD7	ENST00000378195.2	chr13	50495613:50495716:50502054:50502221:50505153:50505270,50495613:50495716:50502054:50502221:50510265:50510476,	50502055	50502221	50502187	50502187	Frame_Shift_Del	A	-	p.V47fs
SKCM	TCGA-YG-AA3P-06	CD8A	ENST00000409511.2,ENST00000538832.1,ENST00000283635.3	chr2	87015652:87015683:87016445:87016556:87016762:87016873,	87016446	87016556	87016465	87016481	Frame_Shift_Del	GATAACCAGTGACAGGA	-	p.LLSLVI197fs
SKCM	TCGA-YG-AA3P-06	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
SKCM	TCGA-FS-A1Z7-06	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
SKCM	TCGA-D9-A1JX-06	CPEB2	ENST00000345451.3,ENST00000382395.3	chr4	15008990:15009210:15018811:15018902:15034784:15034835,	15018812	15018902	15018896	15018897	Frame_Shift_Ins	-	T	p.*707fs
SKCM	TCGA-D9-A1JX-06	STARD8	ENST00000252336.6,ENST00000374597.3,ENST00000523864.1,ENST00000374599.3	chrX	67942263:67942488:67943467:67943685:67943786:67943963,	67943468	67943685	67943519	67943520	Frame_Shift_Ins	-	C	p.P871fs
SKCM	TCGA-FS-A1ZG-06	HERC1	ENST00000443617.2,ENST00000560519.1	chr15	64026922:64027048:64039116:64039282:64039922:64040057,	64039117	64039282	64039192	64039192	Frame_Shift_Del	G	-	p.L815fs
SKCM	TCGA-FR-A729-06	ASB13	ENST00000459912.1,ENST00000357700.6	chr10	5693175:5693326:5694825:5695013:5708471:5708541,	5694826	5695013	5694901	5694901	Frame_Shift_Del	G	-	p.S52fs
SKCM	TCGA-ER-A2NG-06	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
SKCM	TCGA-ER-A19K-01	DPY19L2	ENST00000324472.4,ENST00000541083.1,ENST00000439061.2,ENST00000306389.7	chr12	63991673:63991690:63994085:63994166:64002395:64002454,	63994086	63994166	63994127	63994134	Frame_Shift_Del	AAATGATT	-	p.TIIL437fs
SKCM	TCGA-EB-A6L9-06	ARMC10	ENST00000431642.1,ENST00000425331.1	chr7	102727085:102727211:102732923:102733100:102737723:102737795,102727085:102727211:102732923:102733100:102738745:102738884,	102732924	102733100	102733074	102733077	Frame_Shift_Del	TTAC	-	p.LL227fs
SKCM	TCGA-D3-A1QA-06	PDXDC1	ENST00000563679.1,ENST00000450288.2,ENST00000535621.2,ENST00000567306.1,ENST00000569715.1,ENST00000447912.2,ENST00000325823.7,ENST00000570001.1,ENST00000455313.2,ENST00000396410.4	chr16	15109985:15110070:15110976:15111025:15111177:15111244,	15110977	15111025	15111005	15111006	Frame_Shift_Del	TA	-	p.Y281fs
SKCM	TCGA-D3-A1QA-06	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578206	7578207	Frame_Shift_Del	TA	-	p.HS214fs
SKCM	TCGA-D3-A1QA-06	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461727:10461838:10463109:10463227:10463601:10463750,	10463110	10463227	10463113	10463113	Frame_Shift_Del	G	-	p.P1105fs
SKCM	TCGA-D3-A3C3-06	BROX	ENST00000537020.1,ENST00000539697.1,ENST00000340934.5	chr1	222902100:222902170:222902961:222903043:222903368:222903519,	222902962	222903043	222902985	222902986	Frame_Shift_Del	TT	-	p.TL260fs
SKCM	TCGA-D3-A8GR-06	KMT2A	ENST00000389506.5,ENST00000354520.4,ENST00000534358.1,ENST00000525408.1	chr11	118390671:118390779:118391516:118391600:118392002:118392132,	118391517	118391600	118391565	118391565	Frame_Shift_Del	A	-	p.L3826fs
SKCM	TCGA-D3-A8GR-06	RPL38	ENST00000533498.1,ENST00000439590.2,ENST00000311111.6	chr17	72200268:72200329:72205325:72205448:72205942:72206019,	72205326	72205448	72205441	72205442	Frame_Shift_Ins	-	C	p.LP60fs
SKCM	TCGA-ER-A19P-06	LNX1	ENST00000263925.7,ENST00000306888.2	chr4	54342919:54343148:54344731:54344909:54347886:54348021,	54344732	54344909	54344769	54344769	Frame_Shift_Del	G	-	p.P446fs
SKCM	TCGA-ER-A19P-06	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971145	21971148	Frame_Shift_Del	GTTG	-	p.QL85fs
SKCM	TCGA-ER-A19P-06	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971145	21971148	Frame_Shift_Del	GTTG	-	p.QL85fs
SKCM	TCGA-ER-A19P-06	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34664174:34664274:34667985:34668231:34670565:34670628,	34667986	34668231	34668169	34668169	Frame_Shift_Del	C	-	p.T94fs
SKCM	TCGA-D9-A148-06	NFIB	ENST00000397581.2,ENST00000380934.4,ENST00000397579.2,ENST00000380959.3,ENST00000543693.1,ENST00000380924.1,ENST00000380953.1,ENST00000397575.3	chr9	14125630:14125765:14146687:14146806:14150143:14150264,	14146688	14146806	14146714	14146714	Frame_Shift_Del	C	-	p.S300fs
STAD	TCGA-D7-A6EZ-01	TMEM138	ENST00000278826.6,ENST00000451389.2,ENST00000507563.2,ENST00000545420.1	chr11	61131904:61131990:61133516:61133688:61135394:61135470,	61133517	61133688	61133531	61133546	Frame_Shift_Del	CAGTCCTCTTCAACAT	-	p.48_53del
STAD	TCGA-D7-A6EZ-01	TRERF1	ENST00000340840.2,ENST00000372917.4,ENST00000354325.2	chr6	42225872:42225939:42227076:42227461:42232441:42232592,	42227077	42227461	42227417	42227417	Frame_Shift_Del	C	-	p.P644fs
STAD	TCGA-D7-A6EZ-01	TMEM44	ENST00000273580.7,ENST00000392432.2,ENST00000419280.1,ENST00000347147.4,ENST00000330115.3,ENST00000381975.3,ENST00000473092.1	chr3	194344257:194344424:194346625:194346719:194349111:194349238,	194346626	194346719	194346695	194346719	Frame_Shift_Del	CTGCTAGGTAGGCACCAGTGAAAAC	-	p.89_97del
STAD	TCGA-D7-A6EZ-01	RARB	ENST00000480001.1	chr3	25622036:25622213:25636010:25636169:25637910:25637946,	25636011	25636169	25636066	25636115	Frame_Shift_Del	GGAAGCACTAAAAATTTATATCAGAAAAAGACGACCCAGCAAGCCTCACA	-	p.349_365del
STAD	TCGA-VQ-A8DT-01	POU2F3	ENST00000543440.2,ENST00000260264.4,ENST00000533620.1,ENST00000532638.1	chr11	120176352:120176494:120178187:120178324:120180133:120180295,	120178188	120178324	120178294	120178294	Frame_Shift_Del	C	-	p.I294fs
STAD	TCGA-VQ-A8DT-01	RGS7	ENST00000440928.1,ENST00000366562.4,ENST00000407727.1,ENST00000366563.1,ENST00000348120.2,ENST00000366565.1,ENST00000331110.7,ENST00000366564.1,ENST00000446183.2,ENST00000401882.1	chr1	240969439:240969626:240975217:240975343:240976917:240977028,	240975218	240975343	240975304	240975304	Frame_Shift_Del	A	-	p.G333fs
STAD	TCGA-VQ-A8DT-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492791	56492792	Frame_Shift_Del	CT	-	p.50_50del
STAD	TCGA-IN-A6RL-01	TGM3	ENST00000381458.5	chr20	2308765:2309011:2312647:2312956:2315761:2315919,	2312648	2312956	2312674	2312675	Frame_Shift_Ins	-	A	p.Q454fs
STAD	TCGA-IN-A6RL-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70517037:70517167:70533269:70533486:70536176:70536432,	70533270	70533486	70533362	70533408	Frame_Shift_Del	GAACCTCTACGCTCGCGGCTTCCATGACAAAGACAAAGAGTGCAGTT	-	p.490_505del
STAD	TCGA-KB-A93G-01	NANS	ENST00000461452.1,ENST00000210444.5	chr9	100840602:100840629:100843097:100843364:100845127:100845357,	100843098	100843364	100843130	100843130	Frame_Shift_Del	A	-	p.I212fs
STAD	TCGA-KB-A93G-01	CHRNA9	ENST00000310169.2	chr4	40339302:40339381:40350898:40351431:40355995:40356111,	40350899	40351431	40351378	40351381	Frame_Shift_Del	TTCA	-	p.282_283del
STAD	TCGA-KB-A93J-01	CDC42BPA	ENST00000366769.3,ENST00000334218.5,ENST00000366767.3,ENST00000448940.1	chr1	227227831:227227937:227235627:227235711:227257477:227257554,	227235628	227235711	227235703	227235704	Frame_Shift_Ins	-	TC	p.D971fs
STAD	TCGA-KB-A93J-01	ABHD8	ENST00000247706.3	chr19	17402939:17403640:17405096:17405313:17405483:17405654,	17405097	17405313	17405215	17405216	Frame_Shift_Ins	-	CGCT	p.G344fs
STAD	TCGA-KB-A93J-01	TBC1D2	ENST00000375064.1,ENST00000342112.5,ENST00000375066.5	chr9	100975389:100975500:100983114:100983510:100991233:100991322,	100983115	100983510	100983179	100983180	Frame_Shift_Ins	-	GA	p.P437fs
STAD	TCGA-KB-A93J-01	RSRC1	ENST00000480820.1,ENST00000480119.1,ENST00000475278.2,ENST00000295930.3,ENST00000312179.6,ENST00000482822.2,ENST00000464171.1	chr3	158072645:158072697:158178723:158178792:158254880:158254987,	158178724	158178792	158178787	158178796	Frame_Shift_Del	AGGAAGGTAA	-	p.216_218del
STAD	TCGA-KB-A93J-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579528	7579529	Frame_Shift_Ins	-	CATT	p.W53_F54delinsX
STAD	TCGA-KB-A93J-01	CCNG2	ENST00000316355.5,ENST00000502280.1,ENST00000497512.1,ENST00000395640.1,ENST00000354403.5,ENST00000509972.1	chr4	78080519:78080657:78081873:78082124:78082632:78082711,	78081874	78082124	78081964	78081965	Frame_Shift_Ins	-	A	p.H123fs
STAD	TCGA-KB-A93J-01	WNK1	ENST00000315939.6,ENST00000340908.4,ENST00000530271.2,ENST00000535698.1	chr12	987437:987527:988738:989197:989886:989980,	988739	989197	988923	988924	Frame_Shift_Ins	-	AG	p.T853fs
STAD	TCGA-KB-A93J-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000559219.1,ENST00000389037.3,ENST00000561220.2	chr15	45439743:45439856:45440101:45440195:45440469:45440645,	45440102	45440195	45440176	45440177	Frame_Shift_Ins	-	AGTT	p.E875fs
STAD	TCGA-KB-A93J-01	POP5	ENST00000357500.4	chr12	121017576:121017726:121018917:121019060:121019145:121019182,	121018918	121019060	121019044	121019048	Frame_Shift_Del	GTTCG	-	p.12_13del
STAD	TCGA-KB-A93J-01	POP5	ENST00000543355.1	chr12	121017576:121017726:121018798:121019060:121019145:121019182,	121018799	121019060	121019044	121019048	Frame_Shift_Del	GTTCG	-	p.12_13del
STAD	TCGA-KB-A93J-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835794	82835795	Frame_Shift_Ins	-	G	p.S2324fs
STAD	TCGA-KB-A93J-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860420	96860421	Frame_Shift_Ins	-	G	p.N524fs
STAD	TCGA-KB-A93J-01	FKBP8	ENST00000597547.1,ENST00000453489.2,ENST00000222308.4,ENST00000608443.1,ENST00000599540.2,ENST00000597611.3,ENST00000594844.1,ENST00000597960.3,ENST00000596558.2	chr19	18650180:18650269:18650360:18650530:18652488:18652584,	18650361	18650530	18650522	18650523	Frame_Shift_Ins	-	C	p.L101fs
STAD	TCGA-KB-A93J-01	COG1	ENST00000438720.3,ENST00000299886.4	chr17	71199138:71199285:71199770:71199932:71201691:71201819,	71199771	71199932	71199778	71199788	Frame_Shift_Del	GGTATGTACAG	-	p.743_746del
STAD	TCGA-KB-A93J-01	STOML2	ENST00000452248.2	chr9	35102091:35102191:35102682:35102820:35103046:35103130,	35102683	35102820	35102749	35102750	Frame_Shift_Ins	-	T	p.L39fs
STAD	TCGA-KB-A93J-01	LIPH	ENST00000424591.2	chr3	185251463:185251467:185252552:185252920:185270210:185270298,	185252553	185252920	185252832	185252833	Frame_Shift_Ins	-	T	p.Y46_T47delinsX
STAD	TCGA-KB-A93J-01	RPL8	ENST00000529163.1	chr8	146015739:146015855:146016661:146016880:146017157:146017257,146015739:146015855:146016661:146016880:146017750:146017775,	146016662	146016880	146016765	146016771	Frame_Shift_Del	GTTCCCT	-	p.131_133del
STAD	TCGA-RD-A7BW-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018736	1018742	Frame_Shift_Del	CGTTGTT	-	p.1354_1356del
STAD	TCGA-MX-A5UJ-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484643	56484643	Frame_Shift_Del	T	-	p.T1397fs
STAD	TCGA-MX-A5UJ-01	SNX25	ENST00000264694.8,ENST00000504273.1,ENST00000504959.1	chr4	186267690:186267804:186272598:186272763:186274638:186274756,	186272599	186272763	186272695	186272695	Frame_Shift_Del	A	-	p.G635fs
STAD	TCGA-MX-A5UJ-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770652	Frame_Shift_Del	G	-	p.P1127fs
STAD	TCGA-MX-A5UJ-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-MX-A5UJ-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-MX-A5UJ-01	HERC2	ENST00000261609.7	chr15	28478579:28478707:28478809:28478942:28479215:28479430,	28478810	28478942	28478874	28478874	Frame_Shift_Del	G	-	p.E1430fs
STAD	TCGA-MX-A5UJ-01	ATP9A	ENST00000402822.1,ENST00000338821.5	chr20	50342357:50342471:50346372:50346517:50384840:50384867,	50346373	50346517	50346454	50346454	Frame_Shift_Del	C	-	p.H45fs
STAD	TCGA-MX-A5UJ-01	NTN4	ENST00000343702.4,ENST00000538383.1,ENST00000344911.4,ENST00000553059.1	chr12	96104218:96104407:96106989:96107116:96131643:96131922,	96106990	96107116	96107008	96107008	Frame_Shift_Del	C	-	p.A325fs
STAD	TCGA-MX-A5UJ-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115590927:115591003:115594639:115594696:115596732:115596847,	115594640	115594696	115594657	115594657	Frame_Shift_Del	T	-	p.K141fs
STAD	TCGA-MX-A5UJ-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19290755:19290874:19296005:19296244:19298053:19298120,	19296006	19296244	19296163	19296164	Frame_Shift_Ins	-	T	p.P320fs
STAD	TCGA-MX-A5UJ-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072237	63072237	Frame_Shift_Del	T	-	p.V491fs
STAD	TCGA-MX-A5UJ-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112460	36112461	Frame_Shift_Ins	-	A	p.Q683fs
STAD	TCGA-MX-A5UJ-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384448	12384448	Frame_Shift_Del	A	-	p.W256fs
STAD	TCGA-MX-A5UJ-01	ARL17A	ENST00000336125.5,ENST00000329240.4,ENST00000337845.7,ENST00000573185.1,ENST00000570550.1	chr17	44648124:44648235:44653540:44653705:44656966:44657017,	44653541	44653705	44653639	44653639	Frame_Shift_Del	T	-	p.K17fs
STAD	TCGA-MX-A5UJ-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266965	6266965	Frame_Shift_Del	C	-	p.A133fs
STAD	TCGA-MX-A5UJ-01	AP3M2	ENST00000518421.1	chr8	42010602:42010623:42012133:42012478:42015458:42015603,42011995:42012054:42012133:42012478:42015458:42015603,	42012134	42012478	42012435	42012438	Frame_Shift_Del	TGTT	-	p.77_78del
STAD	TCGA-MX-A5UJ-01	AP3M2	ENST00000174653.3	chr8	42010463:42010623:42012083:42012478:42015458:42015603,	42012084	42012478	42012435	42012438	Frame_Shift_Del	TGTT	-	p.77_78del
STAD	TCGA-MX-A5UJ-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564716	42564716	Frame_Shift_Del	G	-	p.L1943fs
STAD	TCGA-MX-A5UJ-01	CPT1C	ENST00000595969.1,ENST00000295404.5	chr19	50195495:50195650:50200582:50200722:50203940:50203946,50195495:50195650:50200582:50200722:50204573:50204653,	50200583	50200722	50200614	50200615	Frame_Shift_Ins	-	C	p.S58fs
STAD	TCGA-MX-A5UJ-01	GLIS2	ENST00000433375.1,ENST00000262366.3	chr16	4383347:4383520:4384801:4384978:4385060:4385194,	4384802	4384978	4384871	4384871	Frame_Shift_Del	G	-	p.S138fs
STAD	TCGA-MX-A5UJ-01	AMOTL2	ENST00000506326.1,ENST00000249883.5	chr3	134076392:134076605:134077381:134077561:134078124:134078345,	134077382	134077561	134077461	134077462	Frame_Shift_Ins	-	G	p.P735fs
STAD	TCGA-MX-A5UJ-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000513145.1	chr3	134076392:134076605:134077381:134077558:134078124:134078345,	134077382	134077558	134077461	134077462	Frame_Shift_Ins	-	G	p.P735fs
STAD	TCGA-MX-A5UJ-01	NOMO3	ENST00000399336.4,ENST00000575225.1,ENST00000574157.1,ENST00000538468.1,ENST00000263012.6,ENST00000572932.1	chr16	16376872:16376983:16379261:16379363:16381599:16381677,	16379262	16379363	16379339	16379339	Frame_Shift_Del	C	-	p.F1100fs
STAD	TCGA-MX-A5UJ-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299981	107299981	Frame_Shift_Del	T	-	p.N326fs
STAD	TCGA-MX-A5UJ-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220775	29220776	Frame_Shift_Ins	-	A	p.G1635fs
STAD	TCGA-MX-A5UJ-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99893879	99893879	Frame_Shift_Del	A	-	p.L590fs
STAD	TCGA-MX-A5UJ-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.G116fs
STAD	TCGA-MX-A5UJ-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-MX-A5UJ-01	MPO	ENST00000225275.3,ENST00000340482.3	chr17	56349015:56349253:56350108:56350279:56350774:56350853,	56350109	56350279	56350265	56350266	Frame_Shift_Ins	-	G	p.I546fs
STAD	TCGA-MX-A5UJ-01	KLKB1	ENST00000511608.1,ENST00000264690.6,ENST00000511406.1	chr4	187177145:187177241:187178379:187178519:187179174:187179446,	187178380	187178519	187178504	187178504	Frame_Shift_Del	A	-	p.G570fs
STAD	TCGA-MX-A5UJ-01	SPRYD7	ENST00000378195.2,ENST00000361840.3	chr13	50486841:50489296:50495613:50495716:50502054:50502221,	50495614	50495716	50495667	50495667	Frame_Shift_Del	T	-	p.N147fs
STAD	TCGA-MX-A5UJ-01	STAU1	ENST00000371828.3,ENST00000340954.7,ENST00000371802.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47736518:47736665:47739628:47739772:47740911:47741124,	47739629	47739772	47739699	47739699	Frame_Shift_Del	T	-	p.K299fs
STAD	TCGA-MX-A5UJ-01	STAU1	ENST00000371792.1	chr20	47736518:47736665:47739628:47739766:47740911:47741124,	47739629	47739766	47739699	47739699	Frame_Shift_Del	T	-	p.K299fs
STAD	TCGA-MX-A5UJ-01	ATP2A3	ENST00000572694.1,ENST00000397039.1,ENST00000397041.3,ENST00000359983.3,ENST00000352011.3,ENST00000309890.7,ENST00000397035.3,ENST00000397043.3	chr17	3844732:3844948:3845899:3846025:3846684:3846816,	3845900	3846025	3845918	3845919	Frame_Shift_Ins	-	C	p.G509fs
STAD	TCGA-MX-A5UJ-01	PKD1	ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2142496:2142593:2142954:2143094:2143544:2143739,	2142955	2143094	2143071	2143071	Frame_Shift_Del	A	-	p.L3681fs
STAD	TCGA-MX-A5UJ-01	HLA-DOA	ENST00000450833.2	chr6	32974856:32974992:32975087:32975369:32975789:32975831,32974577:32974618:32975087:32975369:32975789:32975831,	32975088	32975369	32975279	32975279	Frame_Shift_Del	G	-	p.P141fs
STAD	TCGA-MX-A5UJ-01	HLA-DOA	ENST00000485901.1	chr6	32974577:32974618:32974856:32975369:32975789:32975831,	32974857	32975369	32975279	32975279	Frame_Shift_Del	G	-	p.P141fs
STAD	TCGA-MX-A5UJ-01	PRKAR1B	ENST00000417852.1	chr7	720192:720363:750965:751164:767226:767287,720192:720363:750965:751164:766846:766874,	750966	751164	751064	751065	Frame_Shift_Ins	-	C	p.I27fs
STAD	TCGA-MX-A5UJ-01	OPHN1	ENST00000355520.5	chrX	67273486:67273652:67283695:67284019:67292993:67293141,	67283696	67284019	67283963	67283964	Frame_Shift_Ins	-	G	p.K631fs
STAD	TCGA-MX-A5UJ-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878533	89878534	Frame_Shift_Ins	-	G	p.P96fs
STAD	TCGA-MX-A5UJ-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.A110fs
STAD	TCGA-MX-A5UJ-01	IL3RA	ENST00000381469.2,ENST00000331035.4	chrX	1497551:1497657:1499915:1499997:1501283:1501358,	1499916	1499997	1499940	1499941	Frame_Shift_Ins	-	C	p.F335fs
STAD	TCGA-MX-A5UJ-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496721	15496722	Frame_Shift_Ins	-	G	p.V422fs
STAD	TCGA-MX-A5UJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088787	27088788	Frame_Shift_Ins	-	G	p.Q799fs
STAD	TCGA-MX-A5UJ-01	IL37	ENST00000353225.3	chr2	113670547:113670671:113671368:113671431:113675211:113675354,	113671369	113671431	113671382	113671382	Frame_Shift_Del	C	-	p.S32fs
STAD	TCGA-MX-A5UJ-01	PLCD4	ENST00000417849.1,ENST00000483685.1,ENST00000432688.1,ENST00000469493.1,ENST00000450993.2,ENST00000415854.1	chr2	219480429:219480484:219480626:219480785:219483301:219483416,	219480627	219480785	219480727	219480728	Frame_Shift_Ins	-	A	p.Q41fs
STAD	TCGA-MX-A5UJ-01	EIF5A2	ENST00000295822.2,ENST00000474417.1	chr3	170612080:170612212:170624777:170624882:170625430:170625588,	170624778	170624882	170624844	170624844	Frame_Shift_Del	T	-	p.Y69fs
STAD	TCGA-MX-A5UJ-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173546	154173546	Frame_Shift_Del	G	-	p.R275fs
STAD	TCGA-MX-A5UJ-01	FBXO24	ENST00000241071.6,ENST00000468962.1,ENST00000488079.1,ENST00000427939.2	chr7	100192005:100192164:100192724:100192846:100193197:100193244,	100192725	100192846	100192728	100192729	Frame_Shift_Ins	-	G	p.Q357fs
STAD	TCGA-MX-A5UJ-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663648	103663649	Frame_Shift_Ins	-	G	p.P304fs
STAD	TCGA-MX-A5UJ-01	PAEP	ENST00000433563.1	chr9	138453691:138453743:138454205:138454279:138454665:138454693,	138454206	138454279	138454243	138454243	Frame_Shift_Del	C	-	p.T67fs
STAD	TCGA-MX-A5UJ-01	PAEP	ENST00000371766.2,ENST00000479141.1,ENST00000277508.5	chr9	138453691:138453743:138454139:138454279:138454665:138454693,	138454140	138454279	138454243	138454243	Frame_Shift_Del	C	-	p.T67fs
STAD	TCGA-MX-A5UJ-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38103659:38103859:38104071:38104292:38105331:38105410,	38104072	38104292	38104179	38104179	Frame_Shift_Del	A	-	p.L327fs
STAD	TCGA-MX-A5UJ-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824638	114824639	Frame_Shift_Ins	-	A	p.G198fs
STAD	TCGA-MX-A5UJ-01	BEST3	ENST00000548658.1,ENST00000331471.4,ENST00000330891.5,ENST00000393365.1	chr12	70088149:70088244:70091426:70091593:70092984:70093065,	70091427	70091593	70091534	70091534	Frame_Shift_Del	A	-	p.G16fs
STAD	TCGA-MX-A5UJ-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47570301:47570439:47571471:47571651:47571805:47571894,	47571472	47571651	47571522	47571523	Frame_Shift_Ins	-	T	p.A196fs
STAD	TCGA-MX-A5UJ-01	ACTG2	ENST00000438902.2,ENST00000409624.1,ENST00000345517.3,ENST00000409731.3	chr2	74136181:74136266:74140611:74140773:74141806:74141998,	74140612	74140773	74140744	74140745	Frame_Shift_Ins	-	AG	p.T195fs
STAD	TCGA-MX-A5UJ-01	SLC16A10	ENST00000368851.5	chr6	111493897:111494042:111498414:111498868:111527794:111527938,	111498415	111498868	111498763	111498763	Frame_Shift_Del	A	-	p.P279fs
STAD	TCGA-MX-A5UJ-01	HSD11B2	ENST00000326152.5	chr16	67469859:67470045:67470151:67470289:67470490:67470894,	67470152	67470289	67470245	67470245	Frame_Shift_Del	G	-	p.W253fs
STAD	TCGA-MX-A5UJ-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075899	101075899	Frame_Shift_Del	A	-	p.L366fs
STAD	TCGA-MX-A5UJ-01	ACP1	ENST00000484464.1,ENST00000480874.1,ENST00000442386.1,ENST00000272065.5	chr2	271865:271939:272036:272150:276979:277085,271892:271939:272036:272150:275139:275200,	272037	272150	272080	272081	Frame_Shift_Ins	-	C	p.N54fs
STAD	TCGA-MX-A5UJ-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414122	1414122	Frame_Shift_Del	A	-	p.L544X
STAD	TCGA-MX-A5UJ-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713870	40713870	Frame_Shift_Del	A	-	p.S1636X
STAD	TCGA-MX-A5UJ-01	ZCCHC9	ENST00000407610.3	chr5	80597459:80597874:80600559:80600960:80604379:80604530,80597442:80597489:80600559:80600960:80604379:80604471,80597480:80597517:80600559:80600960:80604379:80604471,	80600560	80600960	80600751	80600751	Frame_Shift_Del	A	-	p.H58fs
STAD	TCGA-MX-A5UJ-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
STAD	TCGA-MX-A5UJ-01	TSPAN8	ENST00000247829.3,ENST00000552128.1,ENST00000546561.1,ENST00000393330.2	chr12	71526472:71526604:71531732:71531840:71531935:71532010,	71531733	71531840	71531768	71531769	Frame_Shift_Ins	-	T	p.Q137fs
STAD	TCGA-MX-A5UJ-01	COASY	ENST00000421097.2,ENST00000591779.1,ENST00000393818.2,ENST00000449624.1,ENST00000420359.1,ENST00000590958.1	chr17	40714950:40715340:40715978:40716193:40716463:40716595,	40715979	40716193	40716115	40716115	Frame_Shift_Del	C	-	p.D308fs
STAD	TCGA-MX-A5UJ-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751218	102751218	Frame_Shift_Del	A	-	p.P108fs
STAD	TCGA-MX-A5UJ-01	DTX2	ENST00000446820.2,ENST00000467729.1,ENST00000307569.8	chr7	76121469:76121570:76129757:76129837:76131614:76131773,	76129758	76129837	76129798	76129798	Frame_Shift_Del	A	-	p.I397fs
STAD	TCGA-MX-A5UJ-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9048910:9049108:9051430:9051592,	9048911	9049108	9048995	9048996	Frame_Shift_Ins	-	G	p.K816fs
STAD	TCGA-MX-A5UJ-01	HCRTR1	ENST00000403528.2	chr1	32084356:32084417:32084651:32084992:32086443:32086687,32084356:32084417:32084651:32084992:32085132:32085311,	32084652	32084992	32084832	32084832	Frame_Shift_Del	C	-	p.V13fs
STAD	TCGA-MX-A5UJ-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.G325fs
STAD	TCGA-MX-A5UJ-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107635331:107635405:107638801:107638937:107642002:107642178,	107638802	107638937	107638926	107638926	Frame_Shift_Del	T	-	p.C76fs
STAD	TCGA-MX-A5UJ-01	RHOBTB3	ENST00000510313.1,ENST00000379982.3,ENST00000504179.1	chr5	95103843:95103870:95115955:95116129:95119500:95119573,	95115956	95116129	95116041	95116042	Frame_Shift_Del	AA	-	p.456_456del
STAD	TCGA-MX-A5UJ-01	VEGFB	ENST00000309422.2	chr11	64003725:64003799:64004658:64004694:64004992:64005127,64003725:64003799:64004658:64004694:64004891:64005127,	64004659	64004694	64004663	64004664	Frame_Shift_Del	AA	-	p.126_127del
STAD	TCGA-MX-A5UJ-01	ESPL1	ENST00000552462.1,ENST00000257934.4,ENST00000552671.1,ENST00000552600.1	chr12	53682321:53682483:53682873:53683087:53683187:53683244,	53682874	53683087	53682904	53682904	Frame_Shift_Del	C	-	p.S1580fs
STAD	TCGA-MX-A5UJ-01	MYD88	ENST00000421516.1,ENST00000417037.2	chr3	38181354:38181489:38181878:38182083:38182247:38182339,	38181879	38182083	38181987	38181988	Frame_Shift_Del	TG	-	p.204_204del
STAD	TCGA-MX-A5UJ-01	MYD88	ENST00000424893.1	chr3	38181354:38181489:38181878:38182059:38182247:38182339,38180155:38180519:38181878:38182059:38182247:38182339,	38181879	38182059	38181987	38181988	Frame_Shift_Del	TG	-	p.204_204del
STAD	TCGA-MX-A5UJ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937581	76937581	Frame_Shift_Del	T	-	p.K1056fs
STAD	TCGA-MX-A5UJ-01	DCUN1D1	ENST00000492563.1	chr3	182681787:182681837:182683466:182683541:182698274:182698308,	182683467	182683541	182683528	182683528	Frame_Shift_Del	G	-	p.S6fs
STAD	TCGA-MX-A5UJ-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334907	Frame_Shift_Del	T	-	p.L924fs
STAD	TCGA-MX-A5UJ-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-VQ-A8DU-01	QRSL1	ENST00000369044.1	chr6	107077488:107077580:107088223:107088383:107088697:107088737,	107088224	107088383	107088346	107088346	Frame_Shift_Del	A	-	p.L49X
STAD	TCGA-VQ-A8DU-01	FZD6	ENST00000522566.1,ENST00000523739.1,ENST00000358755.4,ENST00000522484.1	chr8	104312427:104312512:104330817:104331014:104337262:104337726,104312427:104312512:104330817:104331014:104336708:104337726,	104330818	104331014	104330966	104330970	Frame_Shift_Del	TAATT	-	p.109_110del
STAD	TCGA-VQ-A8DL-01	BOC	ENST00000355385.3,ENST00000495514.1,ENST00000273395.4	chr3	112987145:112987292:112989647:112989791:112991256:112991550,	112989648	112989791	112989649	112989652	Frame_Shift_Del	TAAC	-	p.175_176del
STAD	TCGA-VQ-A8DL-01	SEC23B	ENST00000422877.1,ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000262544.2	chr20	18523011:18523046:18523662:18523816:18526599:18526677,	18523663	18523816	18523712	18523724	Frame_Shift_Del	CAGGAGGCTGCGG	-	p.520_524del
STAD	TCGA-VQ-A8DL-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060137	56060140	Frame_Shift_Del	CATC	-	p.217_218del
STAD	TCGA-VQ-A8DL-01	JAG2	ENST00000347004.2,ENST00000553051.1,ENST00000331782.3	chr14	105618497:105618628:105621898:105621959:105622074:105622326,	105621899	105621959	105621917	105621927	Frame_Shift_Del	GTGCATCCCCC	-	p.254_257del
STAD	TCGA-VQ-A8DL-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50329504:50329613:50342357:50342471:50346372:50346517,	50342358	50342471	50342378	50342379	Frame_Shift_Del	AG	-	p.103_103del
STAD	TCGA-VQ-A8DL-01	PIFO	ENST00000369738.4,ENST00000484512.1	chr1	111889531:111889671:111890295:111890394:111891137:111891170,	111890296	111890394	111890366	111890367	Frame_Shift_Ins	-	AGCT	p.T77fs
STAD	TCGA-VQ-A8DL-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931865	73931866	Frame_Shift_Ins	-	AGTT	p.C149_L150delinsX
STAD	TCGA-VQ-A8DL-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931865	73931866	Frame_Shift_Ins	-	AGTT	p.C149_L150delinsX
STAD	TCGA-VQ-A8DL-01	EXOC7	ENST00000442951.1	chr17	74097351:74097457:74097759:74097944:74099441:74099507,74097351:74097457:74097759:74097944:74099164:74099307,	74097760	74097944	74097940	74097941	Frame_Shift_Ins	-	AC	p.S44fs
STAD	TCGA-VQ-A8DL-01	ERI1	ENST00000519292.1	chr8	8877922:8877974:8887301:8887591:8890058:8890848,	8887302	8887591	8887408	8887409	Frame_Shift_Ins	-	AGCA	p.I305fs
STAD	TCGA-VQ-A8DL-01	ADAM28	ENST00000437154.2,ENST00000265769.4	chr8	24170900:24171093:24177748:24177820:24178730:24178802,	24177749	24177820	24177792	24177799	Frame_Shift_Del	AATATTAT	-	p.207_209del
STAD	TCGA-VQ-A8DL-01	MAPK6	ENST00000261845.5	chr15	52311434:52311573:52338026:52339212:52342189:52342334,	52338027	52339212	52339019	52339020	Frame_Shift_Ins	-	G	p.Q121fs
STAD	TCGA-VQ-A8DL-01	SETBP1	ENST00000282030.5	chr18	42281139:42281797:42449194:42449248:42529845:42533305,	42449195	42449248	42449206	42449207	Frame_Shift_Ins	-	AGTG	p.A166fs
STAD	TCGA-VQ-A8DL-01	CD47	ENST00000355354.7,ENST00000361309.5	chr3	107777183:107777276:107778298:107778391:107779591:107779699,	107778299	107778391	107778384	107778385	Frame_Shift_Del	AT	-	p.202_203del
STAD	TCGA-VQ-A8DL-01	PPP3CB	ENST00000342558.3,ENST00000394822.2,ENST00000360663.5	chr10	75206249:75206334:75214169:75214247:75227310:75227377,75206249:75206331:75214169:75214247:75227310:75227377,	75214170	75214247	75214166	75214171	Frame_Shift_Del	ATACCA	-	p.396_396del
STAD	TCGA-VQ-A8DL-01	SP100	ENST00000409824.1,ENST00000432979.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1	chr2	231307651:231307814:231308892:231309061:231311533:231311617,	231308893	231309061	231308929	231308930	Frame_Shift_Ins	-	AG	p.Q103fs
STAD	TCGA-VQ-A8DL-01	ZMYND12	ENST00000461083.1	chr1	42902091:42902214:42905526:42905696:42921558:42921682,	42905527	42905696	42905657	42905658	Frame_Shift_Ins	-	G	p.Q155fs
STAD	TCGA-VQ-A8DL-01	FBXO27	ENST00000509137.2,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39517509:39517645:39521668:39521764:39521848:39521957,	39521669	39521764	39521724	39521725	Frame_Shift_Ins	-	CT	p.G173fs
STAD	TCGA-VQ-A8DL-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40618875:40619084:40619356:40619442:40626075:40626185,	40619357	40619442	40619415	40619416	Frame_Shift_Ins	-	G	p.S70fs
STAD	TCGA-VQ-A8DL-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40618875:40619084:40619356:40619442:40626075:40626185,	40619357	40619442	40619416	40619416	Frame_Shift_Del	T	-	p.S70fs
STAD	TCGA-VQ-A8DL-01	HAAO	ENST00000402698.2,ENST00000294973.6	chr2	42994734:42994817:42994999:42995068:42996852:42996998,	42995000	42995068	42995060	42995070	Frame_Shift_Del	GGCGATCACCT	-	p.211_214del
STAD	TCGA-RD-A8MV-01	IRF2	ENST00000393593.3	chr4	185320068:185320233:185329311:185329429:185339320:185339367,	185329312	185329429	185329386	185329386	Frame_Shift_Del	C	-	p.S152fs
STAD	TCGA-FP-A8CX-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844802	123844803	Frame_Shift_Del	AG	-	p.929_929del
STAD	TCGA-IN-AB1X-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056244	27056271	Frame_Shift_Del	GGACATGGGTACCCAGGGCAGCCATACG	-	p.413_422del
STAD	TCGA-VQ-AA6B-01	KATNA1	ENST00000494504.1	chr6	149919403:149919486:149922729:149922935:149924403:149924509,	149922730	149922935	149922812	149922812	Frame_Shift_Del	G	-	p.T269fs
STAD	TCGA-VQ-AA6B-01	KATNA1	ENST00000367411.2,ENST00000470620.1,ENST00000335647.5,ENST00000481905.1	chr6	149919403:149919486:149922729:149922888:149924403:149924509,	149922730	149922888	149922812	149922812	Frame_Shift_Del	G	-	p.T269fs
STAD	TCGA-VQ-AA6B-01	PCF11	ENST00000530304.1,ENST00000530660.1	chr11	82868200:82868673:82872368:82872494:82874720:82874827,	82872369	82872494	82872473	82872476	Frame_Shift_Del	ATTT	-	p.99_100del
STAD	TCGA-VQ-A8PM-01	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110200	120110201	Frame_Shift_Ins	-	G	p.T85fs
STAD	TCGA-VQ-A8PM-01	RHOA	ENST00000454011.2	chr3	49405860:49405981:49412866:49413024:49449252:49449361,49399949:49400059:49412866:49413024:49449252:49449361,	49412867	49413024	49412894	49412895	Frame_Shift_Del	CA	-	p.43_44del
STAD	TCGA-HF-A5NB-01	TM7SF3	ENST00000537406.1	chr12	27128509:27128591:27129192:27129290:27132716:27132851,27128509:27128591:27129192:27129290:27130884:27131027,27128509:27128591:27129192:27129290:27133498:27133541,	27129193	27129290	27129212	27129212	Frame_Shift_Del	A	-	p.F423fs
STAD	TCGA-HF-A5NB-01	WDR49	ENST00000453925.2,ENST00000472600.1,ENST00000308378.3,ENST00000476376.1	chr3	167217940:167218087:167223094:167223204:167240102:167240173,	167223095	167223204	167223102	167223102	Frame_Shift_Del	T	-	p.S608fs
STAD	TCGA-HF-A5NB-01	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000435379.1,ENST00000538330.1,ENST00000539875.1,ENST00000543219.1,ENST00000318197.6	chr12	18837063:18837213:18841022:18841152:18847843:18847978,	18841023	18841152	18841025	18841025	Frame_Shift_Del	T	-	p.N530fs
STAD	TCGA-HF-A5NB-01	TCP1	ENST00000538530.1	chr6	160206505:160206528:160206931:160207052:160208774:160208934,	160206932	160207052	160207001	160207001	Frame_Shift_Del	T	-	p.N103fs
STAD	TCGA-HF-A5NB-01	TCP1	ENST00000420894.2,ENST00000545764.1,ENST00000539948.1,ENST00000392168.2,ENST00000321394.7,ENST00000537390.1	chr6	160206505:160206528:160206931:160207029:160208774:160208903,	160206932	160207029	160207001	160207001	Frame_Shift_Del	T	-	p.N103fs
STAD	TCGA-HF-A5NB-01	PPFIA1	ENST00000527612.1,ENST00000528750.1,ENST00000526262.1,ENST00000389547.3,ENST00000532504.1,ENST00000253925.7,ENST00000530390.1	chr11	70201744:70201917:70202266:70202360:70208200:70208281,	70202267	70202360	70202354	70202354	Frame_Shift_Del	A	-	p.Q859fs
STAD	TCGA-HF-A5NB-01	SQSTM1	ENST00000389805.4,ENST00000402874.3,ENST00000376929.3,ENST00000360718.5	chr5	179252145:179252226:179260031:179260246:179260586:179260782,	179260032	179260246	179260083	179260083	Frame_Shift_Del	C	-	p.T269fs
STAD	TCGA-HF-A5NB-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514338	75514338	Frame_Shift_Del	T	-	p.N674fs
STAD	TCGA-HF-A5NB-01	USP35	ENST00000530546.1,ENST00000529308.1,ENST00000526425.1,ENST00000441408.2,ENST00000528910.1	chr11	77911178:77911280:77911695:77911854:77916887:77917081,	77911696	77911854	77911709	77911710	Frame_Shift_Ins	-	C	p.I351fs
STAD	TCGA-HF-A5NB-01	MED15	ENST00000489651.1,ENST00000263205.7	chr22	20922852:20922918:20936897:20937034:20937126:20937254,20929399:20929519:20936897:20937034:20937126:20937254,	20936898	20937034	20936976	20936976	Frame_Shift_Del	C	-	p.P450fs
STAD	TCGA-HF-A5NB-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088769	27088770	Frame_Shift_Ins	-	G	p.M793fs
STAD	TCGA-HF-A5NB-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P235fs
STAD	TCGA-HF-A5NB-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50156850	50156850	Frame_Shift_Del	G	-	p.S1068fs
STAD	TCGA-HF-A5NB-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9048910:9049108:9051430:9051592,	9048911	9049108	9048995	9048996	Frame_Shift_Ins	-	G	p.K816fs
STAD	TCGA-HF-A5NB-01	CELF2	ENST00000354897.3,ENST00000417956.2,ENST00000537122.1,ENST00000416382.2,ENST00000427450.1,ENST00000450189.1,ENST00000379261.4,ENST00000399850.3,ENST00000354440.2,ENST00000609870.1,ENST00000315874.4,ENST00000542579.1,ENST00000608830.1	chr10	11363169:11363349:11367798:11367942:11370888:11371055,	11367799	11367942	11367878	11367878	Frame_Shift_Del	T	-	p.P458fs
STAD	TCGA-HF-A5NB-01	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000381633.3	chr22	38895404:38895504:38897134:38897285:38901955:38902299,	38897135	38897285	38897211	38897211	Frame_Shift_Del	T	-	p.K121fs
STAD	TCGA-HF-A5NB-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212518	185212518	Frame_Shift_Del	A	-	p.F156fs
STAD	TCGA-HF-A5NB-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520469	49520470	Frame_Shift_Ins	-	T	p.I22fs
STAD	TCGA-HF-A5NB-01	HECTD2	ENST00000536715.1,ENST00000298068.5	chr10	93240850:93240896:93242723:93242833:93244263:93244412,	93242724	93242833	93242829	93242829	Frame_Shift_Del	A	-	p.F272fs
STAD	TCGA-HF-A5NB-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676493	53676493	Frame_Shift_Del	T	-	p.R382fs
STAD	TCGA-HF-A5NB-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050026	44050026	Frame_Shift_Del	C	-	p.A346fs
STAD	TCGA-HF-A5NB-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163028	4163028	Frame_Shift_Del	G	-	p.R301fs
STAD	TCGA-HF-A5NB-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414122	1414122	Frame_Shift_Del	A	-	p.L544X
STAD	TCGA-HF-A5NB-01	CDC45	ENST00000404724.3,ENST00000493724.1,ENST00000263201.1,ENST00000437685.2,ENST00000407835.1	chr22	19504049:19504168:19504339:19504416:19506366:19506432,	19504340	19504416	19504403	19504403	Frame_Shift_Del	T	-	p.H573fs
STAD	TCGA-HF-A5NB-01	BTAF1	ENST00000265990.6,ENST00000544642.1	chr10	93778539:93778692:93784512:93784724:93786348:93786508,	93784513	93784724	93784562	93784562	Frame_Shift_Del	C	-	p.T1638fs
STAD	TCGA-HF-A5NB-01	TOR3A	ENST00000367627.3,ENST00000352445.6,ENST00000483887.1	chr1	179052074:179052188:179054762:179055028:179057045:179057218,	179054763	179055028	179054966	179054967	Frame_Shift_Del	TG	-	p.192_193del
STAD	TCGA-HF-A5NB-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000452931.1,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000310931.4	chr2	242186470:242186557:242187417:242187531:242187658:242187763,	242187418	242187531	242187497	242187498	Frame_Shift_Ins	-	T	p.S551fs
STAD	TCGA-HF-A5NB-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-HF-A5NB-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921732	Frame_Shift_Del	G	-	p.P779fs
STAD	TCGA-HF-A5NB-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379233	29379233	Frame_Shift_Del	A	-	p.S393X
STAD	TCGA-HF-A5NB-01	APCDD1	ENST00000355285.5	chr18	10472003:10472058:10485458:10485780:10487586:10487660,	10485459	10485780	10485528	10485528	Frame_Shift_Del	C	-	p.L281fs
STAD	TCGA-HF-A5NB-01	CCDC74A	ENST00000295171.6,ENST00000409856.3	chr2	132289301:132289375:132290161:132290354:132290436:132290510,	132290162	132290354	132290249	132290249	Frame_Shift_Del	C	-	p.H257fs
STAD	TCGA-HF-A5NB-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28877470	28877470	Frame_Shift_Del	C	-	p.L18fs
STAD	TCGA-HF-A5NB-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087914	109087914	Frame_Shift_Del	T	-	p.V710fs
STAD	TCGA-HF-A5NB-01	RCBTB2	ENST00000344532.3,ENST00000544904.1,ENST00000430805.2	chr13	49085905:49086013:49086151:49086310:49086864:49087031,	49086152	49086310	49086154	49086154	Frame_Shift_Del	C	-	p.E225fs
STAD	TCGA-HF-A5NB-01	SPATA21	ENST00000466212.1	chr1	16737272:16737410:16748405:16748689:16752018:16752226,	16748406	16748689	16748417	16748417	Frame_Shift_Del	T	-	p.A29fs
STAD	TCGA-HF-A5NB-01	MYT1L	ENST00000428368.2	chr2	1915791:1915882:1920976:1921111:1926063:1927035,	1920977	1921111	1921068	1921068	Frame_Shift_Del	G	-	p.G508fs
STAD	TCGA-HF-A5NB-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-HF-A5NB-01	DNAJA1	ENST00000544625.1	chr9	33025283:33025381:33026472:33026614:33029882:33029987,	33026473	33026614	33026514	33026515	Frame_Shift_Ins	-	G	p.L11fs
STAD	TCGA-HF-A5NB-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-HF-A5NB-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-HF-A5NB-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-HF-A5NB-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-HF-A5NB-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P389fs
STAD	TCGA-HF-A5NB-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142241569:142241683:142242834:142243041:142253921:142254047,	142242835	142243041	142242920	142242921	Frame_Shift_Ins	-	C	p.E1356fs
STAD	TCGA-HF-A5NB-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22804478	22804478	Frame_Shift_Del	C	-	p.G1135fs
STAD	TCGA-HF-A5NB-01	LRRIQ3	ENST00000395089.1,ENST00000415760.1,ENST00000354431.4	chr1	74621416:74621550:74648221:74648545:74649119:74649178,	74648222	74648545	74648381	74648382	Frame_Shift_Del	TT	-	p.138_139del
STAD	TCGA-HF-A5NB-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
STAD	TCGA-HF-A5NB-01	ATP13A3	ENST00000256031.4,ENST00000439040.1,ENST00000429136.1	chr3	194134542:194134568:194140607:194140696:194146070:194146099,	194140608	194140696	194140669	194140669	Frame_Shift_Del	A	-	p.L1114fs
STAD	TCGA-HF-A5NB-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334908	Frame_Shift_Del	TT	-	p.923_924del
STAD	TCGA-HF-A5NB-01	ACP1	ENST00000484464.1,ENST00000453390.1,ENST00000442386.1,ENST00000272065.5,ENST00000463831.1,ENST00000272067.6	chr2	272036:272150:276979:277085:277226:277261,275139:275201:276979:277085:277226:277261,	276980	277085	277054	277054	Frame_Shift_Del	A	-	p.Q123fs
STAD	TCGA-HF-A5NB-01	CD19	ENST00000567541.1,ENST00000324662.3	chr16	28943288:28943409:28943666:28943933:28944231:28944435,	28943667	28943933	28943851	28943851	Frame_Shift_Del	G	-	p.M91fs
STAD	TCGA-HF-A5NB-01	TP53BP2	ENST00000473135.1,ENST00000343537.7	chr1	223998165:223998215:224001941:224002055:224008921:224009069,	224001942	224002055	224001956	224001956	Frame_Shift_Del	G	-	p.P92fs
STAD	TCGA-HF-A5NB-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527420	115527421	Frame_Shift_Ins	-	AA	p.S878fs
STAD	TCGA-HF-A5NB-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P596fs
STAD	TCGA-HF-A5NB-01	CARD9	ENST00000460290.1,ENST00000371732.5,ENST00000489932.2,ENST00000371734.3	chr9	139259004:139259011:139259592:139259669:139261251:139261297,	139259593	139259669	139259649	139259650	Frame_Shift_Ins	-	C	p.S460fs
STAD	TCGA-HF-A5NB-01	SSH1	ENST00000546433.1,ENST00000360239.3,ENST00000326495.5	chr12	109178572:109183020:109186061:109186605:109192775:109192976,	109186062	109186605	109186436	109186436	Frame_Shift_Del	G	-	p.L518fs
STAD	TCGA-HF-A5NB-01	SENP6	ENST00000370010.2,ENST00000541192.1,ENST00000370014.3,ENST00000474906.1,ENST00000503501.1,ENST00000447266.2	chr6	76388526:76388643:76405519:76405639:76407140:76407233,	76405520	76405639	76405534	76405534	Frame_Shift_Del	A	-	p.E697fs
STAD	TCGA-HF-A5NB-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-HF-A5NB-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.N865fs
STAD	TCGA-HF-A5NB-01	AQP3	ENST00000494313.1,ENST00000297991.4	chr9	33441772:33442209:33442298:33442516:33442849:33442968,	33442299	33442516	33442483	33442484	Frame_Shift_Ins	-	CA	p.L176fs
STAD	TCGA-HF-A5NB-01	NXF1	ENST00000294172.2,ENST00000530875.1,ENST00000531709.2,ENST00000533671.1,ENST00000532297.1,ENST00000439713.2	chr11	62569648:62569732:62570890:62571044:62571263:62571450,	62570891	62571044	62570938	62570938	Frame_Shift_Del	C	-	p.A108fs
STAD	TCGA-HF-A5NB-01	OCRL	ENST00000357121.5,ENST00000371113.4	chrX	128692816:128692978:128694526:128694628:128695155:128695270,	128694527	128694628	128694527	128694528	Frame_Shift_Ins	-	T	p.R241fs
STAD	TCGA-HF-A5NB-01	THOC1	ENST00000579232.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6,ENST00000577552.1	chr18	226800:226901:246323:246455:247848:247908,	246324	246455	246429	246429	Frame_Shift_Del	A	-	p.K272fs
STAD	TCGA-HF-A5NB-01	TDP1	ENST00000554180.1,ENST00000393454.2	chr14	90422921:90423144:90429451:90430017:90432490:90432534,90422298:90422314:90429451:90430017:90432490:90432534,	90429452	90430017	90429831	90429832	Frame_Shift_Ins	-	A	p.Q125fs
STAD	TCGA-HF-A5NB-01	TDP1	ENST00000553617.1	chr14	90422298:90422314:90429568:90430017:90432490:90432534,	90429569	90430017	90429831	90429832	Frame_Shift_Ins	-	A	p.Q125fs
STAD	TCGA-HF-A5NB-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000360541.5	chr5	137844357:137844505:137846253:137846318:137846733:137846889,	137846254	137846318	137846299	137846302	Frame_Shift_Del	TAGA	-	p.346_347del
STAD	TCGA-HF-A5NB-01	BCAP29	ENST00000379119.2,ENST00000445771.2,ENST00000465919.1,ENST00000379117.2,ENST00000005259.4,ENST00000442065.1,ENST00000457837.1,ENST00000479917.1,ENST00000491150.1,ENST00000421217.1	chr7	107224363:107224427:107234399:107234550:107236311:107236366,	107234400	107234550	107234540	107234540	Frame_Shift_Del	T	-	p.L111fs
STAD	TCGA-HF-A5NB-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086477	109086477	Frame_Shift_Del	A	-	p.Q231fs
STAD	TCGA-HF-A5NB-01	KLHDC2	ENST00000555739.1,ENST00000556559.1,ENST00000554589.1,ENST00000298307.5,ENST00000555443.1	chr14	50246465:50246524:50246930:50247040:50247420:50247493,	50246931	50247040	50246968	50246971	Frame_Shift_Del	CACT	-	p.270_271del
STAD	TCGA-HF-A5NB-01	AP3M2	ENST00000518421.1	chr8	42010602:42010623:42012133:42012478:42015458:42015603,42011995:42012054:42012133:42012478:42015458:42015603,	42012134	42012478	42012265	42012266	Frame_Shift_Ins	-	A	p.W20fs
STAD	TCGA-HF-A5NB-01	AP3M2	ENST00000174653.3	chr8	42010463:42010623:42012083:42012478:42015458:42015603,	42012084	42012478	42012265	42012266	Frame_Shift_Ins	-	A	p.W20fs
STAD	TCGA-HF-A5NB-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31602248:31602334:31602529:31602754:31602908:31603049,	31602530	31602754	31602641	31602641	Frame_Shift_Del	C	-	p.G1682fs
STAD	TCGA-HF-A5NB-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977650	99977650	Frame_Shift_Del	A	-	p.D95fs
STAD	TCGA-HF-A5NB-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151191	13151192	Frame_Shift_Ins	-	C	p.G23fs
STAD	TCGA-HF-A5NB-01	AOX1	ENST00000465297.1,ENST00000260930.6,ENST00000485106.1,ENST00000374700.2	chr2	201533403:201533526:201534297:201534465:201535351:201535373,	201534298	201534465	201534337	201534337	Frame_Shift_Del	T	-	p.V1279fs
STAD	TCGA-HF-A5NB-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Del	GA	-	p.889_889del
STAD	TCGA-HF-A5NB-01	RAB3GAP2	ENST00000358951.2	chr1	220335539:220335610:220338074:220338141:220340634:220340741,	220338075	220338141	220338127	220338127	Frame_Shift_Del	A	-	p.V1035fs
STAD	TCGA-HF-A5NB-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637700	52637700	Frame_Shift_Del	A	-	p.I873fs
STAD	TCGA-HF-A5NB-01	SMPD4	ENST00000351288.6,ENST00000412570.1,ENST00000339679.7,ENST00000443958.2,ENST00000451542.1,ENST00000435455.1,ENST00000431183.2	chr2	130914933:130914969:130921946:130922018:130925030:130925163,	130921947	130922018	130921967	130921967	Frame_Shift_Del	T	-	p.M321fs
STAD	TCGA-HF-A5NB-01	CLSTN3	ENST00000537408.1,ENST00000266546.6	chr12	7295464:7295622:7295758:7295907:7301567:7301794,	7295759	7295907	7295797	7295797	Frame_Shift_Del	G	-	p.E579fs
STAD	TCGA-HF-A5NB-01	ALG11	ENST00000521508.1	chr13	52586549:52586598:52593048:52593279:52598141:52599073,	52593049	52593279	52593050	52593050	Frame_Shift_Del	T	-	p.R15fs
STAD	TCGA-HF-A5NB-01	ICAM3	ENST00000160262.5,ENST00000589261.1	chr19	10445203:10445458:10445741:10446029:10446346:10446449,	10445742	10446029	10446011	10446011	Frame_Shift_Del	G	-	p.P223fs
STAD	TCGA-HF-A5NB-01	ICAM3	ENST00000592439.1	chr19	10445203:10445458:10445816:10446029:10446346:10446449,	10445817	10446029	10446011	10446011	Frame_Shift_Del	G	-	p.P223fs
STAD	TCGA-VQ-AA68-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-VQ-AA68-01	ANKRD6	ENST00000522441.1,ENST00000521004.1,ENST00000369408.5,ENST00000339746.4,ENST00000518253.1,ENST00000415924.2,ENST00000520793.1,ENST00000447838.2	chr6	90334374:90334410:90337301:90337415:90338830:90338942,	90337302	90337415	90337309	90337309	Frame_Shift_Del	T	-	p.V460fs
STAD	TCGA-VQ-AA68-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51777163:51777374:51798907:51799120:51824667:51824824,	51798908	51799120	51799044	51799045	Frame_Shift_Del	CT	-	p.1995_1996del
STAD	TCGA-IN-A7NR-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34667985:34668231:34670565:34670628:34673088:34673153,	34670566	34670628	34670588	34670588	Frame_Shift_Del	C	-	p.F144fs
STAD	TCGA-R5-A7ZI-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603085	91603085	Frame_Shift_Del	A	-	p.Q36fs
STAD	TCGA-R5-A7ZI-01	CCDC180	ENST00000529487.1,ENST00000375202.2,ENST00000494917.2,ENST00000357054.1,ENST00000395220.1	chr9	100075517:100075627:100076674:100076803:100076899:100077010,	100076675	100076803	100076708	100076709	Frame_Shift_Ins	-	T	p.L209fs
STAD	TCGA-R5-A7ZI-01	BTAF1	ENST00000265990.6	chr10	93695413:93695537:93699708:93699823:93702178:93702325,	93699709	93699823	93699781	93699781	Frame_Shift_Del	A	-	p.V70fs
STAD	TCGA-R5-A7ZI-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071525	197071526	Frame_Shift_Ins	-	GA	p.K2286fs
STAD	TCGA-R5-A7ZI-01	LRP1	ENST00000243077.3,ENST00000556356.1	chr12	57603474:57603651:57603811:57603952:57604089:57604263,	57603812	57603952	57603939	57603940	Frame_Shift_Ins	-	C	p.T4189fs
STAD	TCGA-R5-A7ZI-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384448	12384448	Frame_Shift_Del	A	-	p.W256fs
STAD	TCGA-R5-A7ZI-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-R5-A7ZI-01	CTSW	ENST00000526034.1,ENST00000528419.1,ENST00000307886.3	chr11	65647672:65647757:65648877:65648991:65649645:65649800,	65648878	65648991	65648964	65648964	Frame_Shift_Del	G	-	p.F86fs
STAD	TCGA-R5-A7ZI-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299560	107299560	Frame_Shift_Del	T	-	p.E467fs
STAD	TCGA-R5-A7ZI-01	NUB1	ENST00000483358.1,ENST00000468404.1,ENST00000413040.2,ENST00000355851.4,ENST00000470229.1,ENST00000566856.1,ENST00000568733.1,ENST00000470316.1	chr7	151042433:151042552:151046158:151046326:151048509:151048568,	151046159	151046326	151046320	151046320	Frame_Shift_Del	A	-	p.L117fs
STAD	TCGA-R5-A7ZI-01	ARHGEF15	ENST00000361926.3,ENST00000421050.1	chr17	8215308:8215958:8216239:8216572:8216818:8216873,	8216240	8216572	8216322	8216322	Frame_Shift_Del	G	-	p.V228fs
STAD	TCGA-R5-A7ZI-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.A110fs
STAD	TCGA-R5-A7ZI-01	ACSM3	ENST00000562251.1,ENST00000289416.5,ENST00000567387.1,ENST00000450120.2	chr16	20803557:20803657:20807691:20807811:20808207:20808251,	20807692	20807811	20807776	20807776	Frame_Shift_Del	A	-	p.V546fs
STAD	TCGA-R5-A7ZI-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108338	102108338	Frame_Shift_Del	T	-	p.W159fs
STAD	TCGA-R5-A7ZI-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548195	165548196	Frame_Shift_Ins	-	T	p.N209fs
STAD	TCGA-R5-A7ZI-01	BARD1	ENST00000260947.4,ENST00000421162.1,ENST00000449967.2,ENST00000455743.1	chr2	215609790:215609883:215610445:215610578:215617170:215617202,	215610446	215610578	215610468	215610468	Frame_Shift_Del	T	-	p.Y597fs
STAD	TCGA-R5-A7ZI-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85752565:85752758:85758081:85758243:85762306:85762416,	85758082	85758243	85758175	85758175	Frame_Shift_Del	A	-	p.D162fs
STAD	TCGA-R5-A7ZI-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.A150fs
STAD	TCGA-R5-A7ZI-01	PHF11	ENST00000378319.3,ENST00000496623.1	chr13	50071248:50071353:50080770:50080892:50087194:50087302,50070535:50070618:50080770:50080892:50087194:50087302,50070151:50070231:50080770:50080892:50087194:50087302,	50080771	50080892	50080797	50080798	Frame_Shift_Ins	-	A	p.E41fs
STAD	TCGA-R5-A7ZI-01	IRF2	ENST00000393593.3	chr4	185320068:185320233:185329311:185329429:185339320:185339367,	185329312	185329429	185329341	185329341	Frame_Shift_Del	T	-	p.N167fs
STAD	TCGA-R5-A7ZI-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481542	140481542	Frame_Shift_Del	C	-	p.G79fs
STAD	TCGA-R5-A7ZI-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P389fs
STAD	TCGA-R5-A7ZI-01	PDS5B	ENST00000450460.1,ENST00000498550.1,ENST00000315596.10	chr13	33252971:33253066:33258014:33258160:33261270:33261422,	33258015	33258160	33258092	33258092	Frame_Shift_Del	A	-	p.A378fs
STAD	TCGA-R5-A7ZI-01	GLB1L	ENST00000295759.7,ENST00000392089.2,ENST00000356283.3,ENST00000497855.1,ENST00000409640.1	chr2	220102547:220102679:220102971:220103085:220103216:220103306,	220102972	220103085	220103038	220103038	Frame_Shift_Del	A	-	p.E426fs
STAD	TCGA-R5-A7ZI-01	DPEP1	ENST00000421184.1,ENST00000564281.1,ENST00000261615.4,ENST00000393092.3	chr16	89703273:89703343:89703611:89703788:89703875:89703937,	89703612	89703788	89703638	89703638	Frame_Shift_Del	G	-	p.L206fs
STAD	TCGA-R5-A7ZI-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226331	21226332	Frame_Shift_Ins	-	T	p.V570fs
STAD	TCGA-R5-A7ZI-01	ARPC1A	ENST00000262942.5,ENST00000432786.1,ENST00000432884.2,ENST00000441989.2	chr7	98946515:98946582:98951531:98951744:98955962:98956026,	98951532	98951744	98951600	98951601	Frame_Shift_Ins	-	T	p.P190fs
STAD	TCGA-R5-A7ZI-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589609	67589610	Frame_Shift_Ins	-	A	p.E458fs
STAD	TCGA-R5-A7ZI-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469775	161469776	Frame_Shift_Ins	-	A	p.R157fs
STAD	TCGA-R5-A7ZI-01	MYBL1	ENST00000522677.3,ENST00000524176.2	chr8	67485598:67485741:67488241:67488610:67492367:67492598,	67488242	67488610	67488604	67488604	Frame_Shift_Del	C	-	p.V370fs
STAD	TCGA-R5-A7ZI-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300216	101300216	Frame_Shift_Del	T	-	p.R63fs
STAD	TCGA-VQ-A8DV-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016693	1016693	Frame_Shift_Del	G	-	p.S2037fs
STAD	TCGA-VQ-A8DV-01	ADTRP	ENST00000379415.2	chr6	11768481:11768616:11778839:11779199:11803247:11803342,	11778840	11779199	11778855	11778856	Frame_Shift_Ins	-	AT	p.M46fs
STAD	TCGA-D7-A74B-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579394	7579400	Frame_Shift_Del	GGGACAG	-	p.96_98del
STAD	TCGA-VQ-A8P2-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948388	169948389	Frame_Shift_Ins	-	A	p.E221fs
STAD	TCGA-VQ-A8P2-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4,ENST00000460500.1	chr1	85128137:85128213:85130099:85130235:85131804:85131915,	85130100	85130235	85130227	85130227	Frame_Shift_Del	T	-	p.L183fs
STAD	TCGA-VQ-A8P2-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648801	85648801	Frame_Shift_Del	T	-	p.G509fs
STAD	TCGA-VQ-A8P2-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546604	21546604	Frame_Shift_Del	G	-	p.D734fs
STAD	TCGA-VQ-A8P2-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670036	186670037	Frame_Shift_Ins	-	A	p.E5424fs
STAD	TCGA-VQ-A8P2-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823493	114823494	Frame_Shift_Ins	-	T	p.K579fs
STAD	TCGA-VQ-A8P2-01	FBP1	ENST00000415431.1,ENST00000375326.4	chr9	97367738:97367858:97369096:97369234:97372202:97372343,	97369097	97369234	97369187	97369188	Frame_Shift_Ins	-	T	p.K205fs
STAD	TCGA-VQ-A8P2-01	BCAN	ENST00000329117.5	chr1	156622606:156622684:156626073:156626181:156626729:156626832,	156626074	156626181	156626160	156626160	Frame_Shift_Del	G	-	p.Y676X
STAD	TCGA-VQ-A8P2-01	DNAJB13	ENST00000339764.1	chr11	73670538:73670700:73675922:73676080:73677182:73677296,	73675923	73676080	73676057	73676057	Frame_Shift_Del	A	-	p.T156fs
STAD	TCGA-VQ-A8P2-01	GUF1	ENST00000506793.1,ENST00000281543.5	chr4	44691859:44691992:44692733:44692877:44693682:44693816,	44692734	44692877	44692743	44692744	Frame_Shift_Ins	-	A	p.E449fs
STAD	TCGA-VQ-A8P2-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
STAD	TCGA-VQ-A8P2-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339834	22339834	Frame_Shift_Del	C	-	p.F623fs
STAD	TCGA-VQ-A8P2-01	PPP1R17	ENST00000342032.3	chr7	31732019:31732137:31735082:31735235:31736578:31736731,	31735083	31735235	31735141	31735141	Frame_Shift_Del	A	-	p.G47fs
STAD	TCGA-VQ-A8P2-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623864	623865	Frame_Shift_Ins	-	T	p.R163fs
STAD	TCGA-VQ-A8P2-01	ME3	ENST00000530520.1,ENST00000359636.2,ENST00000543262.1,ENST00000526504.1,ENST00000530335.1,ENST00000524826.1	chr11	86267606:86267744:86270731:86270865:86382803:86382864,	86270732	86270865	86270840	86270841	Frame_Shift_Ins	-	T	p.R70fs
STAD	TCGA-VQ-A8P2-01	FRYL	ENST00000358350.4,ENST00000537810.1,ENST00000264319.7,ENST00000503238.1,ENST00000513401.1,ENST00000514617.1,ENST00000507873.2	chr4	48541987:48542085:48542369:48542977:48544043:48544138,	48542370	48542977	48542948	48542948	Frame_Shift_Del	T	-	p.N1906fs
STAD	TCGA-VQ-A8P2-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320540	152320541	Frame_Shift_Ins	-	A	p.N1502fs
STAD	TCGA-VQ-A8P2-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2	chr11	9052304:9052472:9055172:9055343:9068902:9069109,	9055173	9055343	9055268	9055268	Frame_Shift_Del	T	-	p.N538fs
STAD	TCGA-VQ-A8P2-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6,ENST00000494025.1,ENST00000476689.1	chr2	84800590:84800711:84804380:84804532:84806650:84806803,	84804381	84804532	84804389	84804389	Frame_Shift_Del	T	-	p.N644fs
STAD	TCGA-VQ-A8P2-01	RABGAP1	ENST00000373647.4,ENST00000373643.5,ENST00000456584.1	chr9	125861756:125861828:125863844:125864042:125865369:125865547,	125863845	125864042	125863927	125863927	Frame_Shift_Del	T	-	p.V991fs
STAD	TCGA-VQ-A8P2-01	RHBDL3	ENST00000536287.1	chr17	30594920:30594944:30615810:30616035:30621312:30621461,	30615811	30616035	30615996	30615996	Frame_Shift_Del	C	-	p.C160fs
STAD	TCGA-VQ-A8P2-01	AADACL3	ENST00000359318.5	chr1	12776117:12776347:12779476:12779693:12780884:12780948,	12779477	12779693	12779672	12779672	Frame_Shift_Del	G	-	p.G64fs
STAD	TCGA-VQ-A8P2-01	CBLC	ENST00000341505.4,ENST00000270279.3	chr19	45296730:45296877:45297460:45297538:45303637:45303707,	45297461	45297538	45297502	45297503	Frame_Shift_Ins	-	C	p.L442fs
STAD	TCGA-VQ-A8P2-01	PLCB4	ENST00000378473.3,ENST00000482123.1,ENST00000473151.1,ENST00000464199.1,ENST00000378493.1,ENST00000278655.4,ENST00000334005.3,ENST00000414679.2,ENST00000378501.2,ENST00000492632.1	chr20	9371177:9371262:9374234:9374325:9376169:9376265,	9374235	9374325	9374291	9374291	Frame_Shift_Del	A	-	p.I460fs
STAD	TCGA-VQ-A8P2-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102744	168102745	Frame_Shift_Ins	-	A	p.S1614fs
STAD	TCGA-VQ-A8P2-01	CLCA4	ENST00000370563.3	chr1	87025893:87026041:87029343:87029452:87031484:87031703,87025893:87026041:87029343:87029452:87030956:87031134,	87029344	87029452	87029432	87029432	Frame_Shift_Del	A	-	p.S179X
STAD	TCGA-VQ-A8P2-01	ASPA	ENST00000456349.2,ENST00000263080.2	chr17	3379427:3379689:3384896:3385092:3386792:3386886,	3384897	3385092	3384897	3384898	Frame_Shift_Ins	-	A	p.G79fs
STAD	TCGA-VQ-A8P2-01	MYH9	ENST00000216181.5	chr22	36715584:36715680:36716264:36716408:36716842:36716941,	36716265	36716408	36716344	36716344	Frame_Shift_Del	G	-	p.G312fs
STAD	TCGA-VQ-A8P2-01	RFC1	ENST00000381897.1	chr4	39308211:39308321:39310255:39310652:39313064:39313169,39308253:39308324:39310255:39310652:39313064:39313169,	39310256	39310652	39310612	39310612	Frame_Shift_Del	T	-	p.N510fs
STAD	TCGA-VQ-A8P2-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926260	50926261	Frame_Shift_Ins	-	C	p.L102fs
STAD	TCGA-VQ-A8P2-01	COL6A2	ENST00000413758.1,ENST00000397763.1,ENST00000310645.5,ENST00000357838.4,ENST00000409416.1,ENST00000300527.4	chr21	47544564:47544627:47544798:47544834:47545179:47545225,	47544799	47544834	47544810	47544810	Frame_Shift_Del	C	-	p.G582fs
STAD	TCGA-VQ-A8P2-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753558	241753558	Frame_Shift_Del	A	-	p.Q418fs
STAD	TCGA-VQ-A8P2-01	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438082	9438083	Frame_Shift_Ins	-	A	p.M1006fs
STAD	TCGA-VQ-A8P2-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4950964:4951090:4952406:4952527:4953886:4954041,	4952407	4952527	4952485	4952485	Frame_Shift_Del	T	-	p.H121fs
STAD	TCGA-VQ-A8P2-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448298	Frame_Shift_Del	G	-	p.R117fs
STAD	TCGA-VQ-A8P2-01	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123264564:123264765:123265536:123265716:123267777:123267915,	123265537	123265716	123265650	123265650	Frame_Shift_Del	T	-	p.S4222fs
STAD	TCGA-VQ-A8P2-01	GRK4	ENST00000505271.1	chr4	3029638:3029728:3030927:3031136:3042298:3042454,	3030928	3031136	3031025	3031026	Frame_Shift_Ins	-	A	p.F386fs
STAD	TCGA-VQ-A8P2-01	MCM10	ENST00000378714.3,ENST00000378694.1,ENST00000484800.2	chr10	13243420:13243534:13246218:13246364:13251090:13251133,	13246219	13246364	13246300	13246300	Frame_Shift_Del	T	-	p.R812fs
STAD	TCGA-VQ-A8P2-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708445	156708445	Frame_Shift_Del	G	-	p.H18fs
STAD	TCGA-VQ-A8P2-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12923486:12923660:12946458:12946599:12951720:12951873,	12946459	12946599	12946496	12946497	Frame_Shift_Ins	-	T	p.A304fs
STAD	TCGA-VQ-A8P2-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191524046	191524047	Frame_Shift_Ins	-	T	p.E48fs
STAD	TCGA-VQ-A8P2-01	GFM2	ENST00000427854.2,ENST00000296805.3,ENST00000509430.1	chr5	74034142:74034242:74034326:74034467:74035813:74035956,	74034327	74034467	74034392	74034392	Frame_Shift_Del	A	-	p.M386fs
STAD	TCGA-VQ-A8P2-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554712.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53360093:53360145:53385840:53386074:53417129:53417286,	53385841	53386074	53386064	53386064	Frame_Shift_Del	T	-	p.D57fs
STAD	TCGA-VQ-A8P2-01	REV3L	ENST00000470871.1,ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111708967:111709116:111709203:111709288:111710308:111710413,	111709204	111709288	111709250	111709251	Frame_Shift_Ins	-	T	p.F301fs
STAD	TCGA-VQ-A8P2-01	IL17RB	ENST00000475124.1,ENST00000288167.3	chr3	53886897:53887024:53889320:53889368:53890870:53891004,	53889321	53889368	53889346	53889347	Frame_Shift_Ins	-	A	p.Y169fs
STAD	TCGA-VQ-A8P2-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1	chr2	10711998:10712316:10717761:10717864:10729168:10729416,	10717762	10717864	10717826	10717826	Frame_Shift_Del	T	-	p.N628fs
STAD	TCGA-VQ-A8P2-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Frame_Shift_Del	A	-	p.L208fs
STAD	TCGA-VQ-A8P2-01	RGPD2	ENST00000327544.6,ENST00000398146.3,ENST00000420840.2	chr2	88071687:88071883:88074462:88074602:88081642:88082188,	88074463	88074602	88074533	88074534	Frame_Shift_Ins	-	T	p.S1657fs
STAD	TCGA-VQ-A8P2-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345573	23345574	Frame_Shift_Ins	-	GA	p.G185fs
STAD	TCGA-VQ-A8P2-01	AFF1	ENST00000395146.4,ENST00000544085.1	chr4	88052944:88053016:88053422:88053560:88055625:88055846,88052944:88053016:88053422:88053560:88055622:88055846,	88053423	88053560	88053466	88053466	Frame_Shift_Del	A	-	p.C1072X
STAD	TCGA-VQ-A8P2-01	PPP6R3	ENST00000525421.1,ENST00000524904.1,ENST00000393800.2,ENST00000393801.3,ENST00000534534.1,ENST00000393799.2	chr11	68341576:68341692:68343425:68343511:68350510:68350597,	68343426	68343511	68343484	68343487	Frame_Shift_Del	AACT	-	p.506_507del
STAD	TCGA-VQ-A8P2-01	RALBP1	ENST00000383432.3	chr18	9475667:9475689:9512988:9513287:9516842:9517156,	9512989	9513287	9513253	9513254	Frame_Shift_Ins	-	A	p.K70fs
STAD	TCGA-VQ-A8P2-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109086477	109086477	Frame_Shift_Del	A	-	p.Q231fs
STAD	TCGA-VQ-A8P2-01	CAAP1	ENST00000333916.5,ENST00000517946.1,ENST00000535437.1	chr9	26884807:26884883:26886101:26886186:26887310:26887476,	26886102	26886186	26886159	26886160	Frame_Shift_Ins	-	T	p.L178fs
STAD	TCGA-VQ-A8P2-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5968176:5969436:5988344:5988545:6007194:6007364,	5988345	5988545	5988345	5988346	Frame_Shift_Ins	-	T	p.R265fs
STAD	TCGA-VQ-A8P2-01	NUDT6	ENST00000502270.1,ENST00000512116.1,ENST00000304430.5,ENST00000339154.2	chr4	123814325:123814380:123818778:123818833:123833722:123833778,	123818779	123818833	123818826	123818826	Frame_Shift_Del	T	-	p.N169fs
STAD	TCGA-VQ-A8P2-01	MDM1	ENST00000303145.7,ENST00000541686.1,ENST00000545724.1	chr12	68719220:68719355:68720436:68720801:68724886:68725001,	68720437	68720801	68720768	68720769	Frame_Shift_Ins	-	T	p.R56fs
STAD	TCGA-VQ-A8P2-01	CMPK1	ENST00000371873.5	chr1	47834140:47834287:47838626:47838779:47840580:47840657,	47838627	47838779	47838758	47838759	Frame_Shift_Ins	-	T	p.L150fs
STAD	TCGA-VQ-A8P2-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634231	84634231	Frame_Shift_Del	A	-	p.Q245fs
STAD	TCGA-VQ-A8P2-01	SPAG16	ENST00000272898.7,ENST00000374309.3,ENST00000440779.1,ENST00000331683.5,ENST00000413312.1,ENST00000447990.1,ENST00000406979.2	chr2	214181942:214182080:214204886:214204994:214228799:214228869,214181942:214182080:214204886:214204994:214215251:214215369,	214204887	214204994	214204963	214204964	Frame_Shift_Ins	-	A	p.E205fs
STAD	TCGA-VQ-A8P2-01	PIH1D1	ENST00000596916.1,ENST00000601807.1,ENST00000596651.1,ENST00000262265.5,ENST00000596049.1,ENST00000593629.1,ENST00000598889.1,ENST00000594845.1	chr19	49949657:49949680:49949807:49949951:49950280:49950302,	49949808	49949951	49949891	49949891	Frame_Shift_Del	G	-	p.Q250fs
STAD	TCGA-VQ-A8P2-01	PIH1D1	ENST00000602226.1	chr19	49949657:49949680:49949807:49950001:49950280:49950302,	49949808	49950001	49949891	49949891	Frame_Shift_Del	G	-	p.Q250fs
STAD	TCGA-VQ-A8P2-01	PIH1D1	ENST00000597577.1	chr19	49949657:49949680:49949807:49950051:49950280:49950302,	49949808	49950051	49949891	49949891	Frame_Shift_Del	G	-	p.Q250fs
STAD	TCGA-VQ-A8P2-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470369	77470370	Frame_Shift_Ins	-	T	p.L266fs
STAD	TCGA-VQ-A8P2-01	DERL2	ENST00000571971.1,ENST00000570848.1,ENST00000575605.1	chr17	5383706:5383902:5384615:5384709:5386128:5386199,5384420:5384462:5384615:5384709:5386128:5386199,	5384616	5384709	5384634	5384634	Frame_Shift_Del	A	-	p.G104fs
STAD	TCGA-VQ-A8P2-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499816	42499816	Frame_Shift_Del	A	-	p.L223fs
STAD	TCGA-VQ-A8P2-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057212	Frame_Shift_Del	AA	-	p.263_264del
STAD	TCGA-VQ-A8P2-01	C2CD5	ENST00000544930.1,ENST00000541310.1,ENST00000396028.2,ENST00000536386.1,ENST00000545552.1,ENST00000333957.4,ENST00000542676.1,ENST00000446597.1	chr12	22680654:22680826:22688191:22688278:22696994:22697113,	22688192	22688278	22688251	22688251	Frame_Shift_Del	T	-	p.T40fs
STAD	TCGA-VQ-A8P2-01	CCL20	ENST00000473642.1,ENST00000358813.4,ENST00000409189.3	chr2	228680172:228680284:228681022:228681100:228681777:228682179,	228681023	228681100	228681061	228681062	Frame_Shift_Ins	-	A	p.P77fs
STAD	TCGA-VQ-A8P2-01	NMD3	ENST00000472947.1,ENST00000351193.2,ENST00000460469.1	chr3	160967241:160967348:160968043:160968114:160968567:160968678,	160968044	160968114	160968092	160968092	Frame_Shift_Del	A	-	p.R453fs
STAD	TCGA-VQ-A8P2-01	BMPR1A	ENST00000372037.3	chr10	88635623:88635842:88649818:88649981:88651883:88651986,	88649819	88649981	88649922	88649922	Frame_Shift_Del	T	-	p.P57fs
STAD	TCGA-VQ-A8P2-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088682	27088682	Frame_Shift_Del	C	-	p.S764fs
STAD	TCGA-VQ-A8P2-01	LYN	ENST00000520050.1,ENST00000520220.2,ENST00000519728.1	chr8	56860176:56860282:56863017:56863116:56863239:56863307,	56863018	56863116	56863054	56863054	Frame_Shift_Del	A	-	p.T107fs
STAD	TCGA-VQ-A8P2-01	TMEM39B	ENST00000476968.1,ENST00000472503.1,ENST00000427288.1,ENST00000336294.5,ENST00000498613.1,ENST00000468135.1,ENST00000487305.1,ENST00000466321.1	chr1	32541267:32541423:32542764:32542919:32557275:32557345,32542363:32542447:32542764:32542919:32557275:32557345,	32542765	32542919	32542775	32542775	Frame_Shift_Del	G	-	p.R149fs
STAD	TCGA-VQ-A8P2-01	NUBP1	ENST00000573663.1	chr16	10855613:10855716:10861805:10861889:10862903:10863170,10858880:10859001:10861805:10861889:10862903:10863170,	10861806	10861889	10861830	10861831	Frame_Shift_Ins	-	T	p.S282fs
STAD	TCGA-VQ-A8P2-01	MED13	ENST00000397786.2	chr17	60043822:60044012:60045395:60045619:60050087:60050249,	60045396	60045619	60045420	60045420	Frame_Shift_Del	A	-	p.R1390fs
STAD	TCGA-VQ-A8P2-01	METTL6	ENST00000383790.3,ENST00000383789.5	chr3	15466461:15466596:15467793:15468142:15468908:15469025,	15467794	15468142	15467873	15467874	Frame_Shift_Ins	-	A	p.Y49fs
STAD	TCGA-VQ-A8P2-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713870	40713870	Frame_Shift_Del	A	-	p.S1636X
STAD	TCGA-VQ-A8P2-01	BFAR	ENST00000566710.1,ENST00000261658.2,ENST00000426842.2	chr16	14738144:14738466:14748922:14749067:14755748:14755922,14743660:14743830:14748922:14749067:14755748:14755922,	14748923	14749067	14749041	14749041	Frame_Shift_Del	C	-	p.K252fs
STAD	TCGA-VQ-A8P2-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560464	75560464	Frame_Shift_Del	C	-	p.S1698fs
STAD	TCGA-VQ-A8P2-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-VQ-A8P2-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-VQ-A8P2-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-VQ-A8P2-01	TRPC1	ENST00000460401.1	chr3	142443406:142443573:142467099:142467302:142496473:142496500,	142467100	142467302	142467276	142467277	Frame_Shift_Ins	-	A	p.N202fs
STAD	TCGA-VQ-A8P2-01	TYROBP	ENST00000262629.4,ENST00000587837.1	chr19	36398119:36398166:36398347:36398482:36398631:36398664,	36398348	36398482	36398364	36398364	Frame_Shift_Del	C	-	p.R72fs
STAD	TCGA-VQ-A8P2-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154690	19154691	Frame_Shift_Ins	-	T	p.S39fs
STAD	TCGA-VQ-A8P2-01	DSN1	ENST00000373750.4,ENST00000447406.1,ENST00000426836.1,ENST00000373745.3	chr20	35396371:35396445:35399275:35399596:35402064:35402123,35396371:35396445:35399275:35399596:35399827:35399876,	35399276	35399596	35399447	35399448	Frame_Shift_Ins	-	T	p.G62fs
STAD	TCGA-VQ-A8P2-01	DSN1	ENST00000480153.1	chr20	35396371:35396445:35399275:35399876:35402064:35402123,	35399276	35399876	35399447	35399448	Frame_Shift_Ins	-	T	p.G62fs
STAD	TCGA-VQ-A8P2-01	FAXC	ENST00000389677.5,ENST00000480148.1	chr6	99771358:99771543:99781226:99781423:99790773:99790810,	99781227	99781423	99781357	99781358	Frame_Shift_Ins	-	T	p.V157fs
STAD	TCGA-VQ-A8P2-01	ST3GAL3	ENST00000372375.2,ENST00000372372.2,ENST00000372368.2,ENST00000262915.3,ENST00000361746.4,ENST00000351035.3	chr1	44280562:44280605:44290402:44290564:44303890:44303918,	44290403	44290564	44290469	44290470	Frame_Shift_Ins	-	A	p.P107fs
STAD	TCGA-RD-A8N9-01	MPG	ENST00000356432.3	chr16	128255:128332:129423:129699:133050:133255,	129424	129699	129443	129443	Frame_Shift_Del	A	-	p.Q20fs
STAD	TCGA-RD-A8N9-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576919	7576919	Frame_Shift_Del	G	-	p.N310fs
STAD	TCGA-B7-A5TJ-01	SIPA1L3	ENST00000222345.6	chr19	38519728:38519796:38571895:38573739:38579360:38579491,	38571896	38573739	38573183	38573183	Frame_Shift_Del	C	-	p.S326fs
STAD	TCGA-B7-A5TJ-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532525	3532525	Frame_Shift_Del	G	-	p.S373fs
STAD	TCGA-B7-A5TJ-01	SULT1A1	ENST00000566189.1	chr16	28619798:28619924:28620028:28620211:28621251:28621311,	28620029	28620211	28620108	28620120	Frame_Shift_Del	GTACTTGATGAGC	-	p.20_24del
STAD	TCGA-B7-A5TJ-01	SULT1A1	ENST00000562058.1,ENST00000314752.7,ENST00000395609.1	chr16	28619798:28619924:28620028:28620180:28621251:28621311,	28620029	28620180	28620108	28620120	Frame_Shift_Del	GTACTTGATGAGC	-	p.20_24del
STAD	TCGA-B7-A5TJ-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35881066:35881315:35884043:35884173:35885070:35887544,	35884044	35884173	35884071	35884075	Frame_Shift_Del	GAAAT	-	p.1446_1447del
STAD	TCGA-VQ-A8PE-01	NBEA	ENST00000379922.3,ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3,ENST00000537702.1	chr13	36220395:36220485:36223791:36223984:36225941:36226013,	36223792	36223984	36223864	36223864	Frame_Shift_Del	C	-	p.F2593fs
STAD	TCGA-VQ-A8PE-01	IFT46	ENST00000530872.1,ENST00000534114.1,ENST00000264020.2	chr11	118427708:118427760:118428452:118428605:118430499:118430547,	118428453	118428605	118428468	118428469	Frame_Shift_Ins	-	CT	p.S61fs
STAD	TCGA-VQ-A8PE-01	SLC9A8	ENST00000361573.2,ENST00000541138.1,ENST00000417961.1,ENST00000539601.1	chr20	48431544:48431726:48439597:48439678:48456077:48456136,	48439598	48439678	48439644	48439644	Frame_Shift_Del	T	-	p.H85fs
STAD	TCGA-IN-A7NU-01	ARID2	ENST00000479608.1,ENST00000334344.6,ENST00000444670.1,ENST00000422737.1,ENST00000457135.1	chr12	46246077:46246679:46254583:46254732:46285562:46285701,	46254584	46254732	46254692	46254692	Frame_Shift_Del	C	-	p.K1627fs
STAD	TCGA-SW-A7EA-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17402081	17402081	Frame_Shift_Del	T	-	p.D206fs
STAD	TCGA-SW-A7EA-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-SW-A7EA-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.T1288fs
STAD	TCGA-SW-A7EA-01	NDUFA10	ENST00000443626.1	chr2	240929490:240929599:240946732:240946787:240957969:240958056,	240946733	240946787	240946734	240946734	Frame_Shift_Del	T	-	p.K268fs
STAD	TCGA-SW-A7EA-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728643	100728644	Frame_Shift_Ins	-	A	p.E228fs
STAD	TCGA-SW-A7EA-01	DCX	ENST00000338081.3,ENST00000371993.2,ENST00000488120.1	chrX	110543835:110544971:110555869:110555964:110574131:110574269,110543835:110544971:110555869:110555964:110574146:110574269,	110555870	110555964	110555930	110555930	Frame_Shift_Del	G	-	p.K404fs
STAD	TCGA-SW-A7EA-01	SNUPN	ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75893478:75893559:75897490:75897568:75899556:75899654,	75897491	75897568	75897504	75897505	Frame_Shift_Ins	-	T	p.T222fs
STAD	TCGA-SW-A7EA-01	LARP7	ENST00000509622.1	chr4	113558680:113558759:113565823:113565924:113567506:113567607,113558348:113558395:113565823:113565924:113567506:113567607,	113565824	113565924	113565896	113565896	Frame_Shift_Del	A	-	p.E31fs
STAD	TCGA-SW-A7EA-01	LARP7	ENST00000324052.6,ENST00000505034.1	chr4	113558680:113558759:113565823:113566027:113567506:113567607,	113565824	113566027	113565896	113565896	Frame_Shift_Del	A	-	p.E31fs
STAD	TCGA-SW-A7EA-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740528	62740528	Frame_Shift_Del	G	-	p.P83fs
STAD	TCGA-SW-A7EA-01	LRP1B	ENST00000389484.3,ENST00000437977.1,ENST00000442974.1	chr2	141027810:141027915:141031992:141032167:141055376:141055538,	141031993	141032167	141032033	141032034	Frame_Shift_Ins	-	C	p.H4368fs
STAD	TCGA-SW-A7EA-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
STAD	TCGA-SW-A7EA-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478763	90478763	Frame_Shift_Del	A	-	p.E298fs
STAD	TCGA-SW-A7EA-01	CEP57	ENST00000325486.5,ENST00000535224.1	chr11	95551990:95552068:95555034:95555142:95555662:95555740,95551990:95552068:95555034:95555142:95560949:95561065,	95555035	95555142	95555113	95555113	Frame_Shift_Del	A	-	p.I259fs
STAD	TCGA-SW-A7EA-01	IL17RB	ENST00000475124.1,ENST00000288167.3	chr3	53886897:53887024:53889320:53889368:53890870:53891004,	53889321	53889368	53889347	53889347	Frame_Shift_Del	A	-	p.Y169X
STAD	TCGA-SW-A7EA-01	COPS4	ENST00000503682.1,ENST00000509317.1,ENST00000264389.2	chr4	83987590:83987706:83989590:83989675:83996449:83996524,	83989591	83989675	83989622	83989622	Frame_Shift_Del	A	-	p.E345fs
STAD	TCGA-SW-A7EA-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047735	96047736	Frame_Shift_Ins	-	A	p.W117fs
STAD	TCGA-SW-A7EA-01	TRIM3	ENST00000345851.3,ENST00000359518.3,ENST00000537602.1,ENST00000525074.1,ENST00000536344.1	chr11	6472121:6472290:6472500:6472668:6477301:6477374,	6472501	6472668	6472535	6472536	Frame_Shift_Ins	-	A	p.W556fs
STAD	TCGA-SW-A7EA-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334907	Frame_Shift_Del	T	-	p.L924fs
STAD	TCGA-SW-A7EA-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413803	43413803	Frame_Shift_Del	T	-	p.V135fs
STAD	TCGA-SW-A7EA-01	NCOR1	ENST00000458113.2	chr17	15968798:15969008:15971207:15971435:15973478:15973612,15968798:15969005:15971207:15971435:15973478:15973612,	15971208	15971435	15971253	15971254	Frame_Shift_Ins	-	G	p.T1582fs
STAD	TCGA-SW-A7EA-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436022	72436023	Frame_Shift_Ins	-	C	p.N81fs
STAD	TCGA-SW-A7EA-01	GPRC5C	ENST00000481232.1	chr17	72428254:72428280:72435883:72436185:72439956:72440051,	72435884	72436185	72436022	72436023	Frame_Shift_Ins	-	C	p.N81fs
STAD	TCGA-SW-A7EA-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622164	24622165	Frame_Shift_Ins	-	C	p.D370fs
STAD	TCGA-SW-A7EA-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351056	89351057	Frame_Shift_Ins	-	T	p.H632fs
STAD	TCGA-SW-A7EA-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000445855.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136432967:136433056:136437742:136437894:136467002:136467106,	136437743	136437894	136437772	136437773	Frame_Shift_Ins	-	C	p.I744fs
STAD	TCGA-SW-A7EA-01	RMDN3	ENST00000560588.1,ENST00000260385.6,ENST00000558232.1,ENST00000338376.3,ENST00000558777.1	chr15	41029485:41029539:41029825:41029924:41030162:41030240,	41029826	41029924	41029894	41029894	Frame_Shift_Del	T	-	p.T386fs
STAD	TCGA-SW-A7EA-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102993	61102994	Frame_Shift_Ins	-	T	p.Y545fs
STAD	TCGA-SW-A7EA-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561666	210561667	Frame_Shift_Ins	-	A	p.A1471fs
STAD	TCGA-SW-A7EA-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103907125	103907125	Frame_Shift_Del	C	-	p.S1459fs
STAD	TCGA-SW-A7EA-01	ENTPD6	ENST00000360031.2,ENST00000435520.1	chr20	25176474:25176503:25187714:25188033:25190484:25190561,25187157:25187226:25187714:25188033:25190484:25190561,	25187715	25188033	25187923	25187924	Frame_Shift_Ins	-	C	p.S89fs
STAD	TCGA-SW-A7EA-01	ENTPD6	ENST00000433259.2,ENST00000376652.4,ENST00000425813.1	chr20	25176474:25176503:25187711:25188033:25190484:25190561,25187157:25187226:25187711:25188033:25190484:25190561,	25187712	25188033	25187923	25187924	Frame_Shift_Ins	-	C	p.S89fs
STAD	TCGA-SW-A7EA-01	WRAP73	ENST00000270708.7,ENST00000465916.1,ENST00000378322.3,ENST00000497940.1	chr1	3551577:3551638:3551723:3551858:3552507:3552594,	3551724	3551858	3551750	3551750	Frame_Shift_Del	G	-	p.L238fs
STAD	TCGA-SW-A7EA-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108043205	108043205	Frame_Shift_Del	A	-	p.S836X
STAD	TCGA-SW-A7EA-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319188	54319189	Frame_Shift_Del	AG	-	p.462_463del
STAD	TCGA-SW-A7EA-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319188	54319189	Frame_Shift_Del	AG	-	p.462_463del
STAD	TCGA-SW-A7EA-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753557	241753558	Frame_Shift_Ins	-	A	p.Q418fs
STAD	TCGA-VQ-AA6I-01	PRICKLE3	ENST00000540849.1,ENST00000453382.1,ENST00000536904.1,ENST00000376317.3	chrX	49031969:49032614:49033251:49033551:49034341:49034528,	49033252	49033551	49033350	49033350	Frame_Shift_Del	G	-	p.P386fs
STAD	TCGA-VQ-AA6I-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292920	98292921	Frame_Shift_Ins	-	A	p.V405fs
STAD	TCGA-VQ-AA6I-01	LDHA	ENST00000542179.1,ENST00000430553.2,ENST00000375710.3,ENST00000540430.1,ENST00000538451.1,ENST00000545215.1,ENST00000541097.1,ENST00000422447.3,ENST00000379412.5	chr11	18425284:18425358:18426995:18427119:18428663:18428705,	18426996	18427119	18427050	18427051	Frame_Shift_Del	TG	-	p.284_284del
STAD	TCGA-R5-A805-01	CPNE1	ENST00000415920.1	chr20	34214173:34214303:34214484:34214725:34215201:34215262,	34214485	34214725	34214303	34214487	Frame_Shift_Del	CCTGCCAAGAAAAGGGAAAAGTCAGTGGTGGCCCAGAACAGCTGCCCAAAGTCTGTATTTCATGCTCAAGAACCCAACCATATCCCAGGCTTAGAGGAAAAGGTGAGCATCCCTTGGGCCTCAACCCTACTCACATCAGGGAAAGGTGAAAGGGTAAACTCCCAGATCAAATTTGCACCTACTCA	-	p.497_497del
STAD	TCGA-VQ-A8E7-01	PPIB	ENST00000561048.1	chr15	64452311:64452396:64454239:64454353:64455050:64455205,	64454240	64454353	64454344	64454345	Frame_Shift_Ins	-	A	p.D49_L50delinsX
STAD	TCGA-D7-A6EY-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410381	19410381	Frame_Shift_Del	A	-	p.S149X
STAD	TCGA-D7-A6EY-01	DISC1	ENST00000366633.3,ENST00000295051.7,ENST00000535944.1,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000537876.1,ENST00000539444.1,ENST00000422590.2,ENST00000366637.3	chr1	231837700:231837770:231885671:231885822:231902885:231903015,	231885672	231885822	231885809	231885809	Frame_Shift_Del	G	-	p.R450fs
STAD	TCGA-D7-A6EY-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730524	37730525	Frame_Shift_Del	GA	-	p.599_599del
STAD	TCGA-D7-A6EY-01	AMDHD1	ENST00000553023.1,ENST00000266736.2	chr12	96346494:96346601:96348688:96348753:96350462:96350474,	96348689	96348753	96348701	96348702	Frame_Shift_Del	CA	-	p.86_86del
STAD	TCGA-D7-A6EY-01	TRPM1	ENST00000560658.1,ENST00000558768.1,ENST00000560801.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31358278:31358450:31359265:31359390:31360081:31360268,	31359266	31359390	31359302	31359303	Frame_Shift_Ins	-	C	p.G211fs
STAD	TCGA-D7-A6EY-01	MFAP3L	ENST00000361618.3	chr4	170913315:170913460:170926730:170927161:170947384:170947446,	170926731	170927161	170926834	170926835	Frame_Shift_Ins	-	A	p.L65fs
STAD	TCGA-D7-A6EY-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197084762:197084877:197085518:197085665:197086934:197087064,	197085519	197085665	197085637	197085637	Frame_Shift_Del	C	-	p.G1392fs
STAD	TCGA-D7-A6EY-01	FSTL4	ENST00000509525.1,ENST00000265342.7	chr5	132537624:132537734:132545882:132545990:132552920:132553070,	132545883	132545990	132545933	132545934	Frame_Shift_Ins	-	T	p.V556fs
STAD	TCGA-D7-A6EY-01	UBE2Q2	ENST00000267938.4,ENST00000561851.1,ENST00000569423.1	chr15	76175706:76175765:76189335:76189402:76191767:76191835,76183259:76183355:76189335:76189402:76191767:76191835,	76189336	76189402	76189396	76189396	Frame_Shift_Del	A	-	p.E363fs
STAD	TCGA-D7-A6EY-01	SCMH1	ENST00000326197.7,ENST00000372595.1,ENST00000402904.2,ENST00000361705.3,ENST00000397174.2,ENST00000397171.2,ENST00000361191.5,ENST00000372597.1,ENST00000372596.1,ENST00000337495.5	chr1	41536266:41536393:41540890:41541123:41608549:41608784,41536266:41536393:41540890:41541123:41578954:41579198,	41540891	41541123	41540951	41540952	Frame_Shift_Ins	-	G	p.P306fs
STAD	TCGA-D7-A6EY-01	TP53BP2	ENST00000498843.1,ENST00000343537.7,ENST00000391878.2	chr1	223983875:223984292:223985916:223986379:223987600:223987749,	223985917	223986379	223985981	223985982	Frame_Shift_Ins	-	T	p.N628fs
STAD	TCGA-D7-A6EY-01	HMGN2	ENST00000464888.1,ENST00000361427.5,ENST00000466194.1,ENST00000463817.1	chr1	26800193:26800223:26800575:26800626:26801062:26801158,	26800576	26800626	26800609	26800609	Frame_Shift_Del	A	-	p.P41fs
STAD	TCGA-D7-A6EY-01	LATS2	ENST00000382592.4,ENST00000542899.1	chr13	21553829:21553936:21555604:21555787:21557362:21557945,	21555605	21555787	21555716	21555716	Frame_Shift_Del	C	-	p.D852fs
STAD	TCGA-D7-A6EY-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806910	22806910	Frame_Shift_Del	T	-	p.L325fs
STAD	TCGA-D7-A6EY-01	GTF2F2	ENST00000340473.6	chr13	45723904:45723923:45725821:45725966:45781558:45781640,	45725822	45725966	45725872	45725872	Frame_Shift_Del	A	-	p.G70fs
STAD	TCGA-D7-A6EY-01	KIAA0319L	ENST00000431916.1	chr1	35940469:35940507:35944566:35944813:36019950:36020120,35940469:35940507:35944566:35944813:35972212:35972468,35936463:35936561:35944566:35944813:35972212:35972468,	35944567	35944813	35944603	35944603	Frame_Shift_Del	G	-	p.Q293fs
STAD	TCGA-D7-A6EY-01	CTSA	ENST00000606788.1,ENST00000191018.5,ENST00000372484.3,ENST00000354880.5,ENST00000372459.2	chr20	44525642:44525679:44526355:44526445:44526643:44526748,	44526356	44526445	44526408	44526409	Frame_Shift_Ins	-	G	p.M424fs
STAD	TCGA-D7-A6EY-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.N865fs
STAD	TCGA-D7-A6EY-01	ZMPSTE24	ENST00000372759.3	chr1	40751596:40751701:40756525:40756669:40758116:40758293,	40756526	40756669	40756543	40756543	Frame_Shift_Del	T	-	p.C359fs
STAD	TCGA-D7-A6EY-01	CBLL1	ENST00000432748.1,ENST00000440859.3,ENST00000222597.2,ENST00000420796.1	chr7	107394339:107394423:107395862:107395936:107398587:107398625,	107395863	107395936	107395909	107395909	Frame_Shift_Del	A	-	p.E138fs
STAD	TCGA-D7-A6EY-01	ADAM10	ENST00000558733.1,ENST00000439637.1	chr15	58974450:58974513:59009775:59009926:59041678:59041793,	59009776	59009926	59009803	59009803	Frame_Shift_Del	A	-	p.L60fs
STAD	TCGA-D7-A6EY-01	PTPN4	ENST00000433888.1	chr2	120672754:120672818:120677644:120677817:120684173:120684242,120672754:120672818:120677644:120677817:120689999:120690125,	120677645	120677817	120677773	120677773	Frame_Shift_Del	T	-	p.N319fs
STAD	TCGA-D7-A6EY-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145427334:145427426:145428637:145428808:145435543:145435641,	145428638	145428808	145428715	145428716	Frame_Shift_Ins	-	G	p.L410fs
STAD	TCGA-D7-A6EY-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.G116fs
STAD	TCGA-D7-A6EY-01	SSH1	ENST00000546433.1,ENST00000360239.3,ENST00000326495.5	chr12	109178572:109183020:109186061:109186605:109192775:109192976,	109186062	109186605	109186436	109186436	Frame_Shift_Del	G	-	p.L518fs
STAD	TCGA-D7-A6EY-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1,ENST00000527339.1	chr11	65313912:65314035:65314268:65314391:65314909:65315036,	65314269	65314391	65314283	65314283	Frame_Shift_Del	C	-	p.G739fs
STAD	TCGA-D7-A6EY-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417669	40417670	Frame_Shift_Ins	-	C	p.L385fs
STAD	TCGA-D7-A6EY-01	TNFRSF8	ENST00000263932.2,ENST00000413146.2	chr1	12195644:12195670:12198285:12198493:12202343:12204264,	12198286	12198493	12198423	12198424	Frame_Shift_Ins	-	G	p.A491fs
STAD	TCGA-D7-A6EY-01	TNFRSF8	ENST00000514649.1,ENST00000417814.2	chr1	12195644:12195670:12198288:12198493:12202343:12204264,	12198289	12198493	12198423	12198424	Frame_Shift_Ins	-	G	p.A491fs
STAD	TCGA-D7-A6EY-01	COL13A1	ENST00000398969.3,ENST00000517713.1,ENST00000398971.3,ENST00000520267.1,ENST00000398975.2,ENST00000520133.1	chr10	71689798:71689843:71690155:71690308:71692315:71692360,71689798:71689843:71690155:71690308:71695105:71695147,	71690156	71690308	71690203	71690203	Frame_Shift_Del	C	-	p.G515fs
STAD	TCGA-D7-A6EY-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50718058:50718205:50718433:50718500:50718917:50719099,	50718434	50718500	50718488	50718489	Frame_Shift_Del	CA	-	p.1396_1397del
STAD	TCGA-D7-A6EY-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3,ENST00000427771.1	chr3	42240668:42240745:42242309:42242546:42243927:42244244,	42242310	42242546	42242450	42242450	Frame_Shift_Del	C	-	p.T444fs
STAD	TCGA-D7-A6EY-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740426	62740427	Frame_Shift_Ins	-	G	p.Q117fs
STAD	TCGA-D7-A6EY-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753558	241753558	Frame_Shift_Del	A	-	p.Q418fs
STAD	TCGA-D7-A6EY-01	LIG3	ENST00000378526.4,ENST00000585740.1,ENST00000585941.1,ENST00000262327.5	chr17	33316484:33316682:33317981:33318133:33318689:33318856,	33317982	33318133	33318078	33318078	Frame_Shift_Del	T	-	p.L329fs
STAD	TCGA-D7-A6EY-01	LNPEP	ENST00000231368.5	chr5	96271167:96271878:96314841:96315682:96320783:96320922,	96314842	96315682	96315249	96315249	Frame_Shift_Del	A	-	p.H142fs
STAD	TCGA-D7-A6EY-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-D7-A6EY-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-D7-A6EY-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-D7-A6EY-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968034	99968035	Frame_Shift_Del	TC	-	p.54_55del
STAD	TCGA-D7-A6EY-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573659	121573659	Frame_Shift_Del	A	-	p.V109fs
STAD	TCGA-D7-A6EY-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1863fs
STAD	TCGA-D7-A6EY-01	SYP	ENST00000479808.1,ENST00000263233.4	chrX	49049728:49049920:49050622:49050818:49055426:49055492,49049728:49049920:49050622:49050818:49054173:49054298,	49050623	49050818	49050777	49050777	Frame_Shift_Del	C	-	p.G90fs
STAD	TCGA-D7-A6EY-01	DPP7	ENST00000463619.1,ENST00000483783.1,ENST00000371579.2	chr9	140006141:140006206:140006324:140006481:140006563:140006621,	140006325	140006481	140006327	140006327	Frame_Shift_Del	C	-	p.G402fs
STAD	TCGA-D7-A6EY-01	HSD11B1L	ENST00000577917.1,ENST00000301382.4	chr19	5681047:5681282:5684829:5684916:5686910:5687002,	5684830	5684916	5684870	5684870	Frame_Shift_Del	G	-	p.L56fs
STAD	TCGA-D7-A6EY-01	HSD11B1L	ENST00000578167.1	chr19	5681047:5681282:5684829:5685130:5686910:5687002,	5684830	5685130	5684870	5684870	Frame_Shift_Del	G	-	p.L56fs
STAD	TCGA-D7-A6EY-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522214.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65470773:65470869:65473341:65473486:65474546:65474685,	65473342	65473486	65473396	65473397	Frame_Shift_Ins	-	AG	p.R545fs
STAD	TCGA-D7-A6EY-01	SREK1	ENST00000522912.1	chr5	65470773:65470869:65473344:65473486:65474546:65474685,	65473345	65473486	65473396	65473397	Frame_Shift_Ins	-	AG	p.R545fs
STAD	TCGA-D7-A6EY-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117680431:117680510:117681101:117681240:117685152:117685327,	117681102	117681240	117681194	117681194	Frame_Shift_Del	T	-	p.K991fs
STAD	TCGA-D7-A6EY-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561448	142561448	Frame_Shift_Del	G	-	p.P53fs
STAD	TCGA-FP-A9TM-01	NOVA1	ENST00000344429.5,ENST00000465357.2,ENST00000547619.1,ENST00000539517.2,ENST00000574031.1	chr14	26949182:26949349:27064615:27064759:27066506:27066642,	27064616	27064759	27064638	27064641	Frame_Shift_Del	AGAC	-	p.86_87del
STAD	TCGA-IN-A6RP-01	NDUFV1	ENST00000527355.1	chr11	67378992:67379040:67379590:67379736:67379842:67379868,	67379591	67379736	67379734	67379839	Frame_Shift_Del	CAGGTATTCACCACCCTTCTGCGTAGCACGGAGGGTGGGTGGCATCAAGGGCCCAGGGTGTTGGGGGATTTTTGGACTCTGTTTCACATGGTCCCCCCACCGACCC	-	p.435_436del
STAD	TCGA-RD-A8MW-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717326	73717327	Frame_Shift_Ins	-	G	p.V2746fs
STAD	TCGA-RD-A8MW-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671583	77671583	Frame_Shift_Del	C	-	p.E3236fs
STAD	TCGA-RD-A8MW-01	ROCK2	ENST00000431087.1,ENST00000401753.1,ENST00000261535.3,ENST00000315872.6	chr2	11361452:11361483:11362208:11362300:11364447:11364586,	11362209	11362300	11362172	11362219	Frame_Shift_Del	TGTGATGGAATGAAAATATTTAGGTTTATTGACTTACTTTCTCTTATG	-	p.364_367del
STAD	TCGA-D7-A74A-01	CCNC	ENST00000369220.4	chr6	99994270:99994350:99997383:99997448:99998093:99998185,	99997384	99997448	99997433	99997433	Frame_Shift_Del	G	-	p.Y184fs
STAD	TCGA-D7-A74A-01	CCNC	ENST00000520371.1,ENST00000524049.1,ENST00000523799.1,ENST00000520429.1,ENST00000484049.2,ENST00000518714.1,ENST00000523961.1,ENST00000486428.2,ENST00000523985.1	chr6	99994270:99994350:99997383:99997451:99998093:99998185,	99997384	99997451	99997433	99997433	Frame_Shift_Del	G	-	p.Y184fs
STAD	TCGA-R5-A7ZE-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018202	1018203	Frame_Shift_Ins	-	T	p.H1533fs
STAD	TCGA-D7-A748-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072236	63072237	Frame_Shift_Ins	-	T	p.V491fs
STAD	TCGA-KB-A6F7-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730702	150730726	Frame_Shift_Del	GGCTACCGCAGCTCCTCCCTCCTCC	-	p.35_43del
STAD	TCGA-KB-A6F7-01	TMEM51	ENST00000451326.2	chr1	15536985:15537058:15541390:15541927:15545821:15545842,15480284:15480450:15541390:15541927:15545821:15545842,15479072:15479280:15541390:15541927:15545821:15545842,	15541391	15541927	15541793	15541794	Frame_Shift_Ins	-	G	p.V70fs
STAD	TCGA-VQ-A91U-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574003	7574003	Frame_Shift_Del	G	-	p.R342fs
STAD	TCGA-F1-A72C-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51160799	51160799	Frame_Shift_Del	A	-	p.E1499fs
STAD	TCGA-F1-A72C-01	PSIP1	ENST00000380738.4,ENST00000380733.4	chr9	15466745:15466857:15468627:15468841:15468954:15469056,	15468628	15468841	15468821	15468824	Frame_Shift_Del	ACTA	-	p.409_410del
STAD	TCGA-RD-A7BT-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117055	72117055	Frame_Shift_Del	A	-	p.L607fs
STAD	TCGA-RD-A7BT-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117055	72117055	Frame_Shift_Del	A	-	p.L607fs
STAD	TCGA-RD-A7BT-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016756	1016756	Frame_Shift_Del	G	-	p.L2016fs
STAD	TCGA-VQ-AA64-01	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507089	18507107	Frame_Shift_Del	GCTTGGGGGCGCTCCGGCT	-	p.223_229del
STAD	TCGA-IN-A6RR-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.V137fs
STAD	TCGA-IN-A6RR-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919821	57919822	Frame_Shift_Ins	-	TC	p.S357fs
STAD	TCGA-R5-A804-01	DNAH5	ENST00000265104.4	chr5	13766084:13766288:13769068:13769245:13769609:13769724,	13769069	13769245	13769135	13769135	Frame_Shift_Del	T	-	p.A3278fs
STAD	TCGA-IN-A6RO-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25785849:25785912:25789845:25789986:25792076:25792196,	25789846	25789986	25789889	25789892	Frame_Shift_Del	TCCG	-	p.724_725del
STAD	TCGA-IN-A6RO-01	GRIPAP1	ENST00000376423.4	chrX	48838007:48838103:48839390:48839504:48839639:48839852,	48839391	48839504	48839408	48839420	Frame_Shift_Del	GCCGTTCAAACCA	-	p.524_528del
STAD	TCGA-IN-A6RO-01	OXA1L	ENST00000481218.1,ENST00000285848.5,ENST00000604262.1,ENST00000431881.2,ENST00000442110.1,ENST00000412791.1,ENST00000358043.5	chr14	23237166:23237380:23238999:23239143:23239401:23239446,	23239000	23239143	23239055	23239055	Frame_Shift_Del	G	-	p.E225fs
STAD	TCGA-IN-A6RO-01	OXA1L	ENST00000495424.1	chr14	23237166:23237380:23239005:23239143:23239401:23239446,	23239006	23239143	23239055	23239055	Frame_Shift_Del	G	-	p.E225fs
STAD	TCGA-B7-A5TN-01	CAMK4	ENST00000514007.1	chr5	110679721:110679800:110710547:110710610:110712557:110712640,110679721:110679800:110710547:110710610:110730407:110730447,	110710548	110710610	110710554	110710554	Frame_Shift_Del	A	-	p.D82fs
STAD	TCGA-VQ-A8E2-01	TMEM38B	ENST00000374688.1,ENST00000374692.3,ENST00000435034.1	chr9	108467955:108468034:108483817:108484002:108484814:108484902,	108483818	108484002	108483827	108483828	Frame_Shift_Ins	-	T	p.T93fs
STAD	TCGA-VQ-A8E2-01	TROAP	ENST00000547923.1	chr12	49724344:49724356:49724443:49724726:49724996:49725190,	49724444	49724726	49724683	49724683	Frame_Shift_Del	T	-	p.P685fs
STAD	TCGA-VQ-A8E2-01	TROAP	ENST00000257909.3	chr12	49723645:49723774:49723927:49724726:49724996:49725190,	49723928	49724726	49724683	49724683	Frame_Shift_Del	T	-	p.P685fs
STAD	TCGA-VQ-A8E2-01	SLC7A6	ENST00000219343.6,ENST00000566454.1	chr16	68321662:68321774:68324298:68324443:68325111:68325235,	68324299	68324443	68324429	68324430	Frame_Shift_Ins	-	A	p.I260fs
STAD	TCGA-RD-A7C1-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135011832:135012215:135027956:135028121:135075099:135075176,	135027957	135028121	135027982	135027985	Frame_Shift_Del	ATTA	-	p.89_90del
STAD	TCGA-VQ-A94T-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236678	33236679	Frame_Shift_Del	TA	-	p.633_633del
STAD	TCGA-VQ-A94T-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016374	1016377	Frame_Shift_Del	AAGA	-	p.2142_2143del
STAD	TCGA-VQ-AA6K-01	JAKMIP2	ENST00000265272.5,ENST00000507386.1,ENST00000333010.6	chr5	146991868:146991934:146997473:146997677:147000228:147000306,	146997474	146997677	146997615	146997615	Frame_Shift_Del	A	-	p.G736fs
STAD	TCGA-VQ-AA6K-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829081	61829082	Frame_Shift_Ins	-	T	p.T3853fs
STAD	TCGA-VQ-A8DZ-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1015942	1015943	Frame_Shift_Del	AC	-	p.2287_2287del
STAD	TCGA-MX-A666-01	PTPN12	ENST00000248594.6,ENST00000435495.2,ENST00000520947.1,ENST00000415482.2	chr7	77266334:77266365:77267940:77268048:77268535:77268597,	77267941	77268048	77268032	77268033	Frame_Shift_Del	AG	-	p.755_755del
STAD	TCGA-CD-8536-01	DNAJC8	ENST00000489277.1,ENST00000263697.4	chr1	28531768:28531860:28534852:28534924:28536482:28536577,	28534853	28534924	28534906	28534907	Frame_Shift_Ins	-	T	p.Q140fs
STAD	TCGA-CD-8536-01	ROS1	ENST00000368507.3,ENST00000368508.3	chr6	117609462:117609965:117622136:117622300:117629956:117630091,	117622137	117622300	117622204	117622205	Frame_Shift_Ins	-	A	p.F2222fs
STAD	TCGA-CD-8536-01	ACTL6B	ENST00000485601.1,ENST00000160382.5	chr7	100252641:100252742:100253043:100253209:100253425:100253502,	100253044	100253209	100253163	100253163	Frame_Shift_Del	C	-	p.G50fs
STAD	TCGA-CD-8536-01	AGPAT5	ENST00000530716.1,ENST00000523234.1,ENST00000285518.6	chr8	6605204:6605349:6612571:6612695:6614683:6614707,	6612572	6612695	6612593	6612594	Frame_Shift_Ins	-	A	p.P256fs
STAD	TCGA-CD-8536-01	DCUN1D5	ENST00000529281.1,ENST00000260247.5,ENST00000531571.1,ENST00000527260.1,ENST00000525420.1	chr11	102937216:102937296:102953476:102953568:102953984:102954055,	102953477	102953568	102953514	102953515	Frame_Shift_Ins	-	A	p.T102fs
STAD	TCGA-CD-8536-01	KIAA0586	ENST00000556134.1	chr14	58894119:58894355:58894989:58895181:58896080:58896151,	58894990	58895181	58895013	58895013	Frame_Shift_Del	A	-	p.K22fs
STAD	TCGA-CD-8536-01	COPS4	ENST00000507376.1	chr4	83956353:83956451:83966749:83966858:83970318:83970460,	83966750	83966858	83966796	83966796	Frame_Shift_Del	A	-	p.E31fs
STAD	TCGA-CD-8536-01	COPS4	ENST00000503682.1,ENST00000506443.1,ENST00000511891.1,ENST00000511653.1,ENST00000264389.2	chr4	83956377:83956451:83966778:83966858:83970318:83970460,	83966779	83966858	83966796	83966796	Frame_Shift_Del	A	-	p.E31fs
STAD	TCGA-CD-8536-01	DNAH8	ENST00000327475.6,ENST00000373278.4,ENST00000449981.2	chr6	38691112:38691247:38697677:38697762:38702249:38702290,	38697678	38697762	38697694	38697695	Frame_Shift_Ins	-	T	p.N181fs
STAD	TCGA-CD-8536-01	KCNH6	ENST00000456941.2,ENST00000583465.1,ENST00000314672.5,ENST00000581784.1	chr17	61619601:61619795:61620936:61621021:61621609:61621772,	61620937	61621021	61620958	61620959	Frame_Shift_Ins	-	C	p.S724fs
STAD	TCGA-CD-8536-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203689676:203689868:203690324:203690538:203691605:203691817,	203690325	203690538	203690405	203690406	Frame_Shift_Ins	-	C	p.E893fs
STAD	TCGA-CD-8536-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097622	27097622	Frame_Shift_Del	A	-	p.N1070fs
STAD	TCGA-CD-8536-01	NBN	ENST00000396252.2,ENST00000265433.3,ENST00000409330.1	chr8	90955586:90955594:90958367:90958523:90960051:90960120,	90958368	90958523	90958480	90958480	Frame_Shift_Del	T	-	p.K653fs
STAD	TCGA-CD-8536-01	LDLR	ENST00000558013.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1,ENST00000455727.2,ENST00000535915.1	chr19	11231045:11231198:11233849:11234020:11238683:11238761,	11233850	11234020	11233946	11233946	Frame_Shift_Del	T	-	p.V746fs
STAD	TCGA-CD-8536-01	SLC12A6	ENST00000458406.2,ENST00000559664.1,ENST00000397707.2,ENST00000397702.2,ENST00000290209.5,ENST00000561080.1,ENST00000560332.1,ENST00000560611.1,ENST00000558589.1,ENST00000558667.1,ENST00000354181.3,ENST00000559523.1	chr15	34548436:34548484:34549842:34549989:34551013:34551145,	34549843	34549989	34549916	34549916	Frame_Shift_Del	A	-	p.L206fs
STAD	TCGA-CD-8536-01	ZCCHC2	ENST00000585873.1,ENST00000591145.1	chr18	60242530:60242783:60243744:60243885:60251678:60251828,	60243745	60243885	60243776	60243776	Frame_Shift_Del	C	-	p.L1167fs
STAD	TCGA-CD-8536-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765683	50765683	Frame_Shift_Del	C	-	p.L658fs
STAD	TCGA-CD-8536-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640671	36640672	Frame_Shift_Del	CA	-	p.516_517del
STAD	TCGA-CD-8536-01	CLEC12B	ENST00000544853.1,ENST00000338896.5,ENST00000539155.1,ENST00000396502.1	chr12	10167129:10167340:10167850:10168005:10168210:10168326,	10167851	10168005	10167893	10167893	Frame_Shift_Del	A	-	p.Q151fs
STAD	TCGA-CD-8536-01	CTSE	ENST00000361052.3,ENST00000358184.2	chr1	206327473:206327596:206328718:206328860:206328961:206329037,	206328719	206328860	206328844	206328844	Frame_Shift_Del	C	-	p.A304fs
STAD	TCGA-CD-8536-01	TEK	ENST00000406359.4,ENST00000519080.1,ENST00000519097.1,ENST00000380036.4	chr9	27185482:27185627:27190526:27190688:27192486:27192621,	27190527	27190688	27190547	27190548	Frame_Shift_Ins	-	C	p.A450fs
STAD	TCGA-CD-8536-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125766	67125767	Frame_Shift_Ins	-	A	p.L306fs
STAD	TCGA-CD-8536-01	ACP1	ENST00000484464.1,ENST00000453390.1,ENST00000442386.1,ENST00000272065.5,ENST00000463831.1,ENST00000272067.6	chr2	272036:272150:276979:277085:277226:277261,275139:275201:276979:277085:277226:277261,	276980	277085	277054	277054	Frame_Shift_Del	A	-	p.Q123fs
STAD	TCGA-CD-8536-01	MAP2K2	ENST00000599345.1,ENST00000394867.4	chr19	4110506:4110653:4117416:4117627:4123780:4123812,	4117417	4117627	4117625	4117626	Frame_Shift_Ins	-	C	p.A32fs
STAD	TCGA-CD-8536-01	IKZF5	ENST00000496605.1	chr10	124755662:124755692:124758008:124758174:124766541:124766692,	124758009	124758174	124758127	124758127	Frame_Shift_Del	T	-	p.P6fs
STAD	TCGA-CD-8536-01	IKZF5	ENST00000368886.5	chr10	124755662:124755692:124758008:124758187:124766541:124766692,	124758009	124758187	124758127	124758127	Frame_Shift_Del	T	-	p.P6fs
STAD	TCGA-CD-8536-01	RANBP3	ENST00000340578.6,ENST00000591333.1,ENST00000589886.1,ENST00000439268.2,ENST00000592133.1	chr19	5941809:5941846:5951403:5951607:5957928:5957943,	5951404	5951607	5951588	5951588	Frame_Shift_Del	T	-	p.N33fs
STAD	TCGA-CD-8536-01	LMBR1	ENST00000461469.1,ENST00000540390.1,ENST00000444719.1,ENST00000434278.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1	chr7	156556396:156556489:156589082:156589186:156619298:156619438,	156589083	156589186	156589160	156589160	Frame_Shift_Del	A	-	p.S116fs
STAD	TCGA-CD-8536-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413028	43413028	Frame_Shift_Del	T	-	p.T393fs
STAD	TCGA-CD-8536-01	ISM2	ENST00000393684.3,ENST00000429906.1,ENST00000342219.4,ENST00000216481.6	chr14	77944917:77945058:77948664:77949010:77950665:77950908,	77948665	77949010	77948937	77948937	Frame_Shift_Del	G	-	p.P234fs
STAD	TCGA-CD-8536-01	FAM206A	ENST00000445175.1	chr9	111697917:111697969:111698587:111698717:111701475:111701552,111697917:111697969:111698587:111698717:111712786:111713024,111696819:111696845:111698587:111698717:111701475:111701552,	111698588	111698717	111698636	111698636	Frame_Shift_Del	A	-	p.G60fs
STAD	TCGA-CD-8536-01	GCNT2	ENST00000495262.1	chr6	10527706:10527893:10528863:10530069:10621583:10621655,	10528864	10530069	10529736	10529736	Frame_Shift_Del	A	-	p.L197fs
STAD	TCGA-CD-8536-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1	chr7	117282491:117282647:117292895:117292985:117304741:117304914,	117292896	117292985	117292906	117292906	Frame_Shift_Del	T	-	p.I1295fs
STAD	TCGA-CD-8536-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823494	114823495	Frame_Shift_Del	TT	-	p.579_579del
STAD	TCGA-CD-8536-01	CENPH	ENST00000283006.2,ENST00000515001.1,ENST00000502689.1	chr5	68498745:68498797:68504022:68504186:68505533:68505628,	68504023	68504186	68504111	68504112	Frame_Shift_Del	AG	-	p.192_192del
STAD	TCGA-CD-8536-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018609	1018612	Frame_Shift_Del	TGTA	-	p.1397_1398del
STAD	TCGA-CD-8536-01	NR2C1	ENST00000551647.1	chr12	95416109:95416179:95418925:95419031:95422162:95422285,95416109:95416179:95418925:95419031:95434251:95434373,	95418926	95419031	95419000	95419001	Frame_Shift_Del	TA	-	p.521_522del
STAD	TCGA-CD-8536-01	TSPAN5	ENST00000505184.1,ENST00000305798.3,ENST00000511753.1	chr4	99397563:99397611:99399835:99399961:99403155:99403326,	99399836	99399961	99399941	99399941	Frame_Shift_Del	A	-	p.G158fs
STAD	TCGA-CD-8536-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52678719:52678805:52682359:52682458:52685757:52685826,	52682360	52682458	52682389	52682390	Frame_Shift_Del	AA	-	p.262_262del
STAD	TCGA-CD-8536-01	KCNMB3	ENST00000392686.2	chr3	178957608:178957852:178960596:178961072:178962282:178962481,	178960597	178961072	178960920	178960921	Frame_Shift_Ins	-	T	p.K204fs
STAD	TCGA-CD-8536-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.P558fs
STAD	TCGA-CD-8536-01	ZSWIM8	ENST00000604754.1,ENST00000603114.1,ENST00000603187.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000431225.1,ENST00000604524.1,ENST00000605216.1,ENST00000604729.1	chr10	75552516:75552610:75553345:75553477:75553622:75553802,	75553346	75553477	75553466	75553466	Frame_Shift_Del	C	-	p.P811fs
STAD	TCGA-CD-8536-01	SOS2	ENST00000216373.5,ENST00000543680.1,ENST00000555794.1	chr14	50625282:50625364:50626148:50626804:50628199:50628327,	50626149	50626804	50626743	50626743	Frame_Shift_Del	T	-	p.M420fs
STAD	TCGA-CD-8536-01	GATAD2A	ENST00000358713.3,ENST00000429563.2,ENST00000252577.5,ENST00000418032.3,ENST00000404158.1,ENST00000360315.3	chr19	19606562:19606694:19606860:19607028:19609251:19609531,	19606861	19607028	19606915	19606916	Frame_Shift_Ins	-	C	p.A271fs
STAD	TCGA-CD-8536-01	TRAP1	ENST00000571538.1,ENST00000571804.1,ENST00000538171.1,ENST00000246957.5	chr16	3729735:3729791:3735996:3736137:3739055:3739076,	3735997	3736137	3736090	3736090	Frame_Shift_Del	T	-	p.L127fs
STAD	TCGA-CD-8536-01	CCDC136	ENST00000487361.1	chr7	128445901:128445955:128457811:128457918:128461852:128461939,128455851:128455985:128457811:128457918:128461852:128461939,128447413:128447599:128457811:128457918:128461852:128461939,	128457812	128457918	128457830	128457830	Frame_Shift_Del	C	-	p.N1127fs
STAD	TCGA-CD-8536-01	FGF1	ENST00000337706.2	chr5	141980364:141980370:141993523:141993726:142077186:142077280,141980364:141980370:141993523:141993726:142065521:142065616,	141993524	141993726	141993589	141993589	Frame_Shift_Del	C	-	p.G35fs
STAD	TCGA-CD-8536-01	TNFAIP2	ENST00000538222.1,ENST00000559255.1	chr14	103600018:103600140:103601555:103601688:103602145:103602611,	103601556	103601688	103601646	103601646	Frame_Shift_Del	G	-	p.M638fs
STAD	TCGA-CD-8536-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823938	114823938	Frame_Shift_Del	T	-	p.N431fs
STAD	TCGA-CD-8536-01	AFG3L2	ENST00000269143.3	chr18	12367274:12367381:12370847:12370925:12371590:12371690,	12370848	12370925	12370885	12370885	Frame_Shift_Del	T	-	p.A86fs
STAD	TCGA-CD-8536-01	RRP7A	ENST00000416699.1,ENST00000323013.6	chr22	42910687:42910785:42911156:42911274:42912016:42912142,	42911157	42911274	42911183	42911184	Frame_Shift_Del	CT	-	p.145_145del
STAD	TCGA-BR-8589-01	PHF10	ENST00000366780.4,ENST00000339209.4	chr6	170104000:170104184:170105228:170105417:170105711:170105820,	170105229	170105417	170105268	170105268	Frame_Shift_Del	A	-	p.Y458fs
STAD	TCGA-IN-7806-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018031	1018031	Frame_Shift_Del	G	-	p.M1591X
STAD	TCGA-D7-6822-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2	chr6	109770602:109770684:109770859:109770986:109771172:109771288,	109770860	109770986	109770864	109770864	Frame_Shift_Del	T	-	p.N477fs
STAD	TCGA-D7-6822-01	PAPOLA	ENST00000392990.2,ENST00000555626.1,ENST00000216277.8,ENST00000553689.1	chr14	96998847:96998986:97000827:97000900:97002215:97002336,	97000828	97000900	97000859	97000859	Frame_Shift_Del	C	-	p.Q289fs
STAD	TCGA-D7-6822-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577087	7577087	Frame_Shift_Del	G	-	p.T284fs
STAD	TCGA-CD-A4MJ-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95357932	95357932	Frame_Shift_Del	T	-	p.A572fs
STAD	TCGA-CD-A4MJ-01	PIK3C3	ENST00000593098.1,ENST00000262039.4,ENST00000398870.3	chr18	39623696:39623781:39629494:39629569:39637846:39638015,	39629495	39629569	39629562	39629562	Frame_Shift_Del	A	-	p.T752fs
STAD	TCGA-CD-A4MJ-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682289	85682290	Frame_Shift_Ins	-	CC	p.T120fs
STAD	TCGA-CD-A4MJ-01	PCIF1	ENST00000372409.3,ENST00000479348.1	chr20	44573645:44573669:44574349:44574522:44574667:44574754,	44574350	44574522	44574482	44574483	Frame_Shift_Del	GA	-	p.434_434del
STAD	TCGA-CD-A4MJ-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169042	33169042	Frame_Shift_Del	C	-	p.A7fs
STAD	TCGA-CD-A4MJ-01	SEMA4G	ENST00000521006.1	chr10	102740924:102740986:102743061:102744114:102744246:102744547,	102743062	102744114	102743278	102743278	Frame_Shift_Del	A	-	p.E641fs
STAD	TCGA-CD-A4MJ-01	MEI1	ENST00000401548.3,ENST00000540833.1,ENST00000300398.4,ENST00000400107.1	chr22	42125668:42125783:42126524:42126641:42128248:42128348,	42126525	42126641	42126614	42126614	Frame_Shift_Del	T	-	p.L356fs
STAD	TCGA-CD-A4MJ-01	LRRC27	ENST00000344079.5,ENST00000368614.3,ENST00000392638.2,ENST00000356571.4,ENST00000462656.1	chr10	134145729:134145760:134146980:134147238:134151068:134151199,	134146981	134147238	134147117	134147117	Frame_Shift_Del	C	-	p.T30fs
STAD	TCGA-CD-A4MJ-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-CD-A4MJ-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-CD-A4MJ-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-CD-A4MJ-01	HYOU1	ENST00000532519.2,ENST00000543287.1	chr11	118919425:118919598:118919729:118920082:118920267:118920347,	118919730	118920082	118919812	118919812	Frame_Shift_Del	G	-	p.P637fs
STAD	TCGA-CD-A4MJ-01	HYOU1	ENST00000404233.3	chr11	118919425:118919598:118919729:118919915:118920267:118920347,	118919730	118919915	118919812	118919812	Frame_Shift_Del	G	-	p.P637fs
STAD	TCGA-CD-A4MJ-01	COL13A1	ENST00000398969.3,ENST00000517713.1,ENST00000398971.3,ENST00000520267.1,ENST00000398975.2,ENST00000520133.1	chr10	71689798:71689843:71690155:71690308:71692315:71692360,71689798:71689843:71690155:71690308:71695105:71695147,	71690156	71690308	71690277	71690277	Frame_Shift_Del	A	-	p.E540fs
STAD	TCGA-CD-A4MJ-01	PRSS33	ENST00000576886.1	chr16	2835002:2835172:2835799:2835962:2836089:2836122,	2835800	2835962	2835834	2835834	Frame_Shift_Del	G	-	p.Q70fs
STAD	TCGA-CD-A4MJ-01	PPP1R13L	ENST00000418234.2,ENST00000585905.1,ENST00000360957.5	chr19	45899595:45899694:45899802:45900316:45901262:45901405,	45899803	45900316	45900173	45900173	Frame_Shift_Del	G	-	p.K115fs
STAD	TCGA-CD-A4MJ-01	EPHB2	ENST00000544305.1,ENST00000374627.1,ENST00000400191.3,ENST00000465676.1,ENST00000374632.3,ENST00000374630.3	chr1	23189529:23189685:23191369:23191705:23208851:23208976,	23191370	23191705	23191383	23191384	Frame_Shift_Ins	-	C	p.A327fs
STAD	TCGA-CD-A4MJ-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000597793.1,ENST00000598325.1,ENST00000601093.1	chr19	50363350:50363440:50363524:50363593:50363870:50363982,	50363525	50363593	50363527	50363527	Frame_Shift_Del	G	-	p.M414fs
STAD	TCGA-CD-A4MJ-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41191837	41191837	Frame_Shift_Del	C	-	p.T274fs
STAD	TCGA-CD-A4MJ-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672365	151672365	Frame_Shift_Del	C	-	p.E946fs
STAD	TCGA-CD-A4MJ-01	MGST2	ENST00000515067.1,ENST00000515137.1,ENST00000265498.1,ENST00000503816.1	chr4	140616350:140616421:140624608:140624690:140625169:140625222,	140624609	140624690	140624683	140624683	Frame_Shift_Del	A	-	p.A101fs
STAD	TCGA-CD-A4MJ-01	EFEMP2	ENST00000526911.1	chr11	65634035:65634183:65634491:65634550:65635331:65635377,	65634492	65634550	65634501	65634501	Frame_Shift_Del	C	-	p.G407fs
STAD	TCGA-CD-A4MJ-01	EFEMP2	ENST00000524408.1	chr11	65634035:65634183:65634336:65634550:65635331:65635377,	65634337	65634550	65634501	65634501	Frame_Shift_Del	C	-	p.G407fs
STAD	TCGA-CD-A4MJ-01	EFEMP2	ENST00000531972.1	chr11	65634035:65634183:65634315:65634550:65635331:65635377,	65634316	65634550	65634501	65634501	Frame_Shift_Del	C	-	p.G407fs
STAD	TCGA-CD-A4MJ-01	EFEMP2	ENST00000526628.1	chr11	65634035:65634183:65634280:65634550:65635331:65635377,	65634281	65634550	65634501	65634501	Frame_Shift_Del	C	-	p.G407fs
STAD	TCGA-CD-A4MJ-01	ASS1	ENST00000372394.1,ENST00000467695.1,ENST00000372393.3,ENST00000422569.1,ENST00000352480.5	chr9	133333943:133333976:133339497:133339554:133342111:133342186,	133339498	133339554	133339540	133339541	Frame_Shift_Ins	-	C	p.A136fs
STAD	TCGA-CD-A4MJ-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55651779	55651780	Frame_Shift_Ins	-	TA	p.R731fs
STAD	TCGA-CD-A4MJ-01	SNRPC	ENST00000374018.1,ENST00000474635.1,ENST00000374017.3,ENST00000244520.5	chr6	34730371:34730480:34735684:34735774:34738067:34738172,	34735685	34735774	34735761	34735762	Frame_Shift_Ins	-	C	p.P79fs
STAD	TCGA-CD-A4MJ-01	TMOD3	ENST00000308580.7,ENST00000544199.1	chr15	52155034:52155207:52161413:52161570:52179785:52179908,	52161414	52161570	52161562	52161562	Frame_Shift_Del	A	-	p.E92fs
STAD	TCGA-CD-A4MJ-01	POLH	ENST00000372226.1	chr6	43544110:43544177:43550052:43550193:43550743:43550843,	43550053	43550193	43550104	43550104	Frame_Shift_Del	T	-	p.C16fs
STAD	TCGA-D7-6526-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573993	7573994	Frame_Shift_Ins	-	TCAGC	p.N345_E346delinsSX
STAD	TCGA-D7-6526-01	COL15A1	ENST00000375001.3	chr9	101796830:101796866:101797295:101797436:101797631:101797700,	101797296	101797436	101797335	101797335	Frame_Shift_Del	A	-	p.G706fs
STAD	TCGA-B7-5818-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75831017:75831157:75833045:75833120:75833663:75833810,	75833046	75833120	75833113	75833113	Frame_Shift_Del	T	-	p.P2294fs
STAD	TCGA-B7-5818-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40440536	40440537	Frame_Shift_Ins	-	T	p.K125fs
STAD	TCGA-BR-A4IY-01	SNX17	ENST00000233575.2,ENST00000464279.1	chr2	27593531:27593673:27595489:27595607:27596113:27596178,27594135:27594210:27595489:27595607:27595906:27595971,27594135:27594210:27595489:27595607:27596113:27596155,	27595490	27595607	27595527	27595528	Frame_Shift_Ins	-	C	p.F59fs
STAD	TCGA-F1-A448-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71726491	71726491	Frame_Shift_Del	T	-	p.A687fs
STAD	TCGA-F1-A448-01	ROCK2	ENST00000261535.3,ENST00000315872.6	chr2	11367379:11367524:11375827:11376088:11389786:11389924,	11375828	11376088	11375864	11375864	Frame_Shift_Del	T	-	p.L230X
STAD	TCGA-F1-A448-01	SUPT3H	ENST00000475057.1,ENST00000306867.5,ENST00000371459.1,ENST00000371460.1,ENST00000371461.2	chr6	44921046:44921154:44922231:44922344:44929489:44929565,	44922232	44922344	44922337	44922337	Frame_Shift_Del	T	-	p.A208fs
STAD	TCGA-F1-A448-01	DEPDC1	ENST00000456315.2	chr1	68947122:68947295:68947728:68948580:68949632:68949773,	68947729	68948580	68948399	68948400	Frame_Shift_Del	TC	-	p.364_365del
STAD	TCGA-F1-A448-01	B4GALT3	ENST00000319769.5,ENST00000493164.1	chr1	161144841:161145018:161145597:161145864:161146223:161146298,	161145598	161145864	161145762	161145762	Frame_Shift_Del	C	-	p.G30fs
STAD	TCGA-F1-A448-01	B4GALT3	ENST00000367998.1,ENST00000496313.1,ENST00000487004.1	chr1	161144841:161145018:161145597:161145885:161146223:161146298,	161145598	161145885	161145762	161145762	Frame_Shift_Del	C	-	p.G30fs
STAD	TCGA-F1-A448-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30020140:30020223:30024636:30024732:30024834:30025019,	30024637	30024732	30024704	30024704	Frame_Shift_Del	A	-	p.G651fs
STAD	TCGA-F1-A448-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877785	150877786	Frame_Shift_Ins	-	C	p.G335fs
STAD	TCGA-F1-A448-01	NLRC5	ENST00000538805.1,ENST00000262510.6,ENST00000538778.1,ENST00000540182.1,ENST00000538930.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000538110.1,ENST00000539144.1,ENST00000543030.1,ENST00000436936.1,ENST00000534931.1	chr16	57085449:57085533:57088662:57088752:57088943:57088948,	57088663	57088752	57088736	57088736	Frame_Shift_Del	A	-	p.V1193fs
STAD	TCGA-F1-A448-01	SLC23A2	ENST00000468355.1,ENST00000338244.1,ENST00000379333.1,ENST00000496331.1	chr20	4855221:4855342:4864287:4864469:4865398:4865469,	4864288	4864469	4864322	4864322	Frame_Shift_Del	C	-	p.E264fs
STAD	TCGA-F1-A448-01	TUBE1	ENST00000604743.1,ENST00000368662.5,ENST00000604814.1	chr6	112395912:112396053:112397139:112397315:112397524:112397677,	112397140	112397315	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
STAD	TCGA-F1-A448-01	TUBE1	ENST00000605457.1	chr6	112395912:112396053:112397139:112397374:112397524:112397677,	112397140	112397374	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
STAD	TCGA-F1-A448-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000446276.1,ENST00000497964.1,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39924794:39924921:39926303:39926466:39927554:39927709,	39926304	39926466	39926343	39926343	Frame_Shift_Del	A	-	p.R5074fs
STAD	TCGA-BR-4187-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4	chr3	196118708:196118796:196120424:196120490:196129822:196129890,	196120425	196120490	196120448	196120448	Frame_Shift_Del	A	-	p.F111fs
STAD	TCGA-BR-A4QL-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.Q319fs
STAD	TCGA-BR-A4QL-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046886	17046886	Frame_Shift_Del	C	-	p.A351fs
STAD	TCGA-BR-A4QL-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816504	203816504	Frame_Shift_Del	A	-	p.E412fs
STAD	TCGA-BR-A4QL-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
STAD	TCGA-BR-A4QL-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688969	60688969	Frame_Shift_Del	G	-	p.L360fs
STAD	TCGA-BR-A4QL-01	VPS35	ENST00000568784.2,ENST00000299138.7	chr16	46693588:46694563:46695629:46695773:46696154:46696394,	46695630	46695773	46695735	46695735	Frame_Shift_Del	T	-	p.A703fs
STAD	TCGA-BR-A4QL-01	ZNF335	ENST00000322927.2	chr20	44596923:44597001:44598089:44598330:44599848:44600099,	44598090	44598330	44598221	44598221	Frame_Shift_Del	G	-	p.P104fs
STAD	TCGA-BR-A4QL-01	GALNT11	ENST00000430044.2	chr7	151722835:151722969:151791274:151791607:151797882:151798006,	151791275	151791607	151791468	151791468	Frame_Shift_Del	A	-	p.P52fs
STAD	TCGA-BR-A4QL-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236735	33236735	Frame_Shift_Del	C	-	p.T652fs
STAD	TCGA-BR-A4QL-01	UGGT2	ENST00000376747.3	chr13	96508411:96508594:96511844:96511929:96513041:96513137,	96511845	96511929	96511867	96511867	Frame_Shift_Del	T	-	p.N1268fs
STAD	TCGA-BR-A4QL-01	POLDIP3	ENST00000451060.2	chr22	42983511:42983578:42987960:42988090:42991542:42991609,42981892:42981974:42987960:42988090:42991542:42991609,	42987961	42988090	42988010	42988011	Frame_Shift_Ins	-	T	p.K324fs
STAD	TCGA-BR-A4QL-01	KIAA0556	ENST00000261588.4	chr16	27751361:27752241:27760904:27761627:27763039:27763245,	27760905	27761627	27761168	27761168	Frame_Shift_Del	G	-	p.A962fs
STAD	TCGA-BR-A4QL-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71233115	71233115	Frame_Shift_Del	G	-	p.Q498fs
STAD	TCGA-BR-A4QL-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094745	143094745	Frame_Shift_Del	T	-	p.G378fs
STAD	TCGA-BR-A4QL-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645975	215645975	Frame_Shift_Del	T	-	p.K208fs
STAD	TCGA-BR-A4QL-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123983920	123983920	Frame_Shift_Del	T	-	p.A720fs
STAD	TCGA-BR-A4QL-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975472	13975473	Frame_Shift_Ins	-	G	p.T139fs
STAD	TCGA-BR-A4QL-01	FAM189B	ENST00000472550.1	chr1	155223874:155223985:155224190:155224247:155224443:155224699,155223415:155223523:155224190:155224247:155224443:155224699,	155224191	155224247	155224231	155224232	Frame_Shift_Ins	-	C	p.V81fs
STAD	TCGA-BR-A4QL-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469818	47469818	Frame_Shift_Del	T	-	p.N75fs
STAD	TCGA-BR-A4QL-01	SLC9B1	ENST00000296422.7,ENST00000394789.3,ENST00000514972.1	chr4	103867803:103867946:103870413:103870584:103910956:103911098,	103870414	103870584	103870465	103870465	Frame_Shift_Del	T	-	p.I111fs
STAD	TCGA-BR-A4QL-01	MYO1G	ENST00000488554.1,ENST00000495831.1,ENST00000258787.7,ENST00000464434.1,ENST00000480503.1,ENST00000463516.1,ENST00000483585.1	chr7	45009638:45009753:45010190:45010336:45010433:45010658,	45010191	45010336	45010276	45010276	Frame_Shift_Del	G	-	p.R378fs
STAD	TCGA-BR-A4QL-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
STAD	TCGA-BR-A4QL-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951317	102951317	Frame_Shift_Del	A	-	p.K598fs
STAD	TCGA-BR-A4QL-01	TPRKB	ENST00000409716.2	chr2	73959710:73959827:73961555:73961715:73964428:73964462,	73961556	73961715	73961623	73961623	Frame_Shift_Del	T	-	p.N25fs
STAD	TCGA-BR-A4QL-01	TPRKB	ENST00000497464.1,ENST00000272424.5,ENST00000484969.1	chr2	73959710:73959827:73961555:73961718:73964428:73964462,73959289:73959412:73961555:73961718:73964428:73964462,	73961556	73961718	73961623	73961623	Frame_Shift_Del	T	-	p.N25fs
STAD	TCGA-BR-A4QL-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-BR-A4QL-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-BR-A4QL-01	KIAA0355	ENST00000299505.6	chr19	34830771:34830897:34832326:34833360:34838781:34838947,	34832327	34833360	34833075	34833075	Frame_Shift_Del	C	-	p.Q745fs
STAD	TCGA-BR-A4QL-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740426	62740427	Frame_Shift_Ins	-	G	p.Q117fs
STAD	TCGA-BR-A4QL-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647321	Frame_Shift_Del	AA	-	p.813_814del
STAD	TCGA-BR-A4QL-01	SCCPDH	ENST00000366510.3	chr1	246923258:246923378:246923472:246923529:246927547:246927659,	246923473	246923529	246923498	246923499	Frame_Shift_Ins	-	T	p.Y320fs
STAD	TCGA-BR-A4QL-01	CORO1A	ENST00000563778.1,ENST00000561815.1,ENST00000219150.5,ENST00000569970.1,ENST00000568763.1,ENST00000565497.1,ENST00000570045.1	chr16	30196529:30196728:30198136:30198266:30198359:30198404,30197918:30198041:30198136:30198266:30198359:30198404,	30198137	30198266	30198155	30198155	Frame_Shift_Del	G	-	p.D113fs
STAD	TCGA-BR-A4QL-01	TMEM41B	ENST00000524543.1,ENST00000299596.4,ENST00000533867.1,ENST00000528080.1	chr11	9305093:9305140:9308001:9308140:9309248:9309353,	9308002	9308140	9308018	9308018	Frame_Shift_Del	A	-	p.I231fs
STAD	TCGA-BR-A4QL-01	RNPEP	ENST00000367286.3	chr1	201965274:201965537:201966446:201966682:201969029:201969073,201965299:201965391:201966446:201966682:201970503:201970527,201965299:201965391:201966446:201966682:201969029:201969073,201958510:201958659:201966446:201966682:201969029:201969073,	201966447	201966682	201966518	201966518	Frame_Shift_Del	C	-	p.T309fs
STAD	TCGA-BR-A4QL-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520470	49520470	Frame_Shift_Del	T	-	p.I22fs
STAD	TCGA-BR-A4QL-01	DEPTOR	ENST00000286234.5,ENST00000523492.1	chr8	120977471:120977650:121013763:121013949:121015215:121015350,	121013764	121013949	121013857	121013857	Frame_Shift_Del	A	-	p.E233fs
STAD	TCGA-BR-A4QL-01	HIVEP1	ENST00000487103.1,ENST00000478545.1,ENST00000379388.2,ENST00000491710.1	chr6	12015819:12015901:12089416:12089470:12120122:12120167,	12089417	12089470	12089463	12089463	Frame_Shift_Del	A	-	p.S29X
STAD	TCGA-BR-A4QL-01	HMGB1	ENST00000326004.4,ENST00000341423.5	chr13	31037347:31037489:31037667:31037831:31039932:31040051,	31037668	31037831	31037761	31037761	Frame_Shift_Del	A	-	p.V20fs
STAD	TCGA-BR-A4QL-01	RNF213	ENST00000508628.2,ENST00000582970.1	chr17	78311632:78311797:78313000:78314156:78316931:78317125,	78313001	78314156	78314019	78314019	Frame_Shift_Del	C	-	p.T1951fs
STAD	TCGA-BR-A4QL-01	NDST4	ENST00000504854.1,ENST00000264363.2	chr4	115769370:115769494:115773880:115773977:115791923:115792106,	115773881	115773977	115773883	115773884	Frame_Shift_Ins	-	T	p.T605fs
STAD	TCGA-BR-A4QL-01	IDO1	ENST00000522495.1,ENST00000523779.1,ENST00000518237.1,ENST00000253513.7	chr8	39782239:39782291:39782741:39782890:39785348:39785657,	39782742	39782890	39782815	39782815	Frame_Shift_Del	G	-	p.A260fs
STAD	TCGA-BR-A4QL-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581420	17581420	Frame_Shift_Del	T	-	p.I14fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128509	202128510	Frame_Shift_Ins	-	C	p.R113fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128509	202128510	Frame_Shift_Ins	-	C	p.R113fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128509	202128510	Frame_Shift_Ins	-	C	p.R113fs
STAD	TCGA-BR-A4QL-01	COG6	ENST00000455146.3,ENST00000356576.4,ENST00000416691.1	chr13	40268770:40268862:40273637:40273755:40293372:40293504,	40273638	40273755	40273702	40273702	Frame_Shift_Del	A	-	p.S410fs
STAD	TCGA-BR-A4QL-01	RRP8	ENST00000533907.1	chr11	6622483:6622832:6623081:6623445:6624633:6624809,	6623082	6623445	6623374	6623374	Frame_Shift_Del	G	-	p.S58fs
STAD	TCGA-BR-A4QL-01	RRP8	ENST00000530762.1	chr11	6622483:6622832:6623081:6623494:6624633:6624809,	6623082	6623494	6623374	6623374	Frame_Shift_Del	G	-	p.S58fs
STAD	TCGA-BR-A4QL-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206848	89206848	Frame_Shift_Del	A	-	p.D75fs
STAD	TCGA-BR-A4QL-01	PTK2B	ENST00000420218.2,ENST00000544172.1,ENST00000346049.5,ENST00000519512.1,ENST00000338238.4,ENST00000517339.1,ENST00000397501.1,ENST00000397497.4	chr8	27288914:27288989:27289776:27289878:27290951:27291030,	27289777	27289878	27289871	27289871	Frame_Shift_Del	C	-	p.A327fs
STAD	TCGA-BR-A4QL-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134568	128134568	Frame_Shift_Del	T	-	p.V407fs
STAD	TCGA-BR-A4QL-01	COPS7A	ENST00000538375.1,ENST00000534947.1,ENST00000229251.3,ENST00000455113.2,ENST00000543155.1,ENST00000534877.1,ENST00000543939.1,ENST00000539735.1	chr12	6839567:6839673:6839834:6839986:6840165:6840263,	6839835	6839986	6839847	6839847	Frame_Shift_Del	A	-	p.L216fs
STAD	TCGA-BR-A4QL-01	EFCAB6	ENST00000468552.1	chr22	43995948:43996143:44004361:44004480:44022326:44022559,	44004362	44004480	44004420	44004420	Frame_Shift_Del	C	-	p.A875fs
STAD	TCGA-BR-A4QL-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100977562:100977658:100990144:100990303:100994164:100994344,	100990145	100990303	100990178	100990179	Frame_Shift_Del	TT	-	p.1162_1163del
STAD	TCGA-BR-A4QL-01	ENTPD6	ENST00000360031.2,ENST00000435520.1	chr20	25176474:25176503:25187714:25188033:25190484:25190561,25187157:25187226:25187714:25188033:25190484:25190561,	25187715	25188033	25187894	25187894	Frame_Shift_Del	G	-	p.P79fs
STAD	TCGA-BR-A4QL-01	ENTPD6	ENST00000433259.2,ENST00000376652.4,ENST00000425813.1	chr20	25176474:25176503:25187711:25188033:25190484:25190561,25187157:25187226:25187711:25188033:25190484:25190561,	25187712	25188033	25187894	25187894	Frame_Shift_Del	G	-	p.P79fs
STAD	TCGA-BR-A4QL-01	MMP10	ENST00000279441.4	chr11	102645918:102646052:102647010:102647155:102647342:102647507,	102647011	102647155	102647146	102647146	Frame_Shift_Del	G	-	p.P266fs
STAD	TCGA-BR-A4QL-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123171376:123171473:123176418:123176495:123179013:123179058,	123176419	123176495	123176474	123176475	Frame_Shift_Ins	-	G	p.K147fs
STAD	TCGA-BR-A4QL-01	TMEM198	ENST00000344458.2,ENST00000373883.3	chr2	220409482:220409615:220412227:220412803:220413873:220414076,	220412228	220412803	220412523	220412523	Frame_Shift_Del	G	-	p.L154fs
STAD	TCGA-BR-A4QL-01	MASP2	ENST00000400897.3	chr1	11094884:11094963:11097749:11097868:11102931:11103079,	11097750	11097868	11097818	11097818	Frame_Shift_Del	C	-	p.V314fs
STAD	TCGA-BR-A4QL-01	MAK16	ENST00000360128.6,ENST00000518389.1	chr8	33354142:33354259:33354749:33354815:33355949:33356164,	33354750	33354815	33354754	33354755	Frame_Shift_Ins	-	G	p.V215fs
STAD	TCGA-BR-A4QL-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939869	40939870	Frame_Shift_Ins	-	G	p.P605fs
STAD	TCGA-BR-A4QL-01	U2AF2	ENST00000308924.4,ENST00000450554.2	chr19	56172403:56172555:56173867:56173984:56174971:56175110,	56173868	56173984	56173905	56173906	Frame_Shift_Ins	-	G	p.L175fs
STAD	TCGA-BR-A4QL-01	NEMF	ENST00000555970.1,ENST00000545773.1,ENST00000556925.1,ENST00000298310.5	chr14	50269954:50270012:50272738:50272851:50280705:50280768,	50272739	50272851	50272836	50272836	Frame_Shift_Del	G	-	p.P587fs
STAD	TCGA-BR-A4QL-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144889721:144889784:144890778:144891195:144891720:144891827,	144890779	144891195	144890805	144890805	Frame_Shift_Del	C	-	p.A697fs
STAD	TCGA-BR-A4QL-01	CNTRL	ENST00000373845.2,ENST00000373855.1,ENST00000238341.5,ENST00000373850.1	chr9	123924133:123924249:123924331:123924549:123927220:123927378,	123924332	123924549	123924525	123924525	Frame_Shift_Del	A	-	p.E1800fs
STAD	TCGA-BR-A4QL-01	BHMT	ENST00000274353.5,ENST00000523508.1	chr5	78416178:78416364:78417040:78417188:78421868:78422051,	78417041	78417188	78417152	78417152	Frame_Shift_Del	C	-	p.V196fs
STAD	TCGA-BR-A4QL-01	FAM129B	ENST00000373312.3,ENST00000373314.3	chr9	130270700:130270817:130271254:130271410:130272424:130272612,	130271255	130271410	130271374	130271374	Frame_Shift_Del	G	-	p.L400fs
STAD	TCGA-BR-A4QL-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992276	21992276	Frame_Shift_Del	G	-	p.P529fs
STAD	TCGA-BR-A4QL-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43017700:43017897:43017997:43018136:43018705:43019206,	43017998	43018136	43018130	43018130	Frame_Shift_Del	A	-	p.W498fs
STAD	TCGA-BR-A4QL-01	CERK	ENST00000216264.8,ENST00000443629.1,ENST00000541677.1	chr22	47082999:47083103:47085888:47086097:47087468:47087674,	47085889	47086097	47086002	47086002	Frame_Shift_Del	C	-	p.K477fs
STAD	TCGA-BR-A4QL-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554288.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53347961:53348187:53360010:53360145:53385840:53386057,	53360011	53360145	53360082	53360082	Frame_Shift_Del	T	-	p.K152fs
STAD	TCGA-BR-A4QL-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590343	5590343	Frame_Shift_Del	C	-	p.G824fs
STAD	TCGA-BR-A4QL-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328259	40328259	Frame_Shift_Del	C	-	p.S215fs
STAD	TCGA-BR-A4QL-01	PCYT1A	ENST00000292823.2,ENST00000431016.1,ENST00000419333.1	chr3	195965661:195965765:195966417:195966606:195968818:195968941,	195966418	195966606	195966504	195966504	Frame_Shift_Del	T	-	p.S271fs
STAD	TCGA-BR-A4QL-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573658	121573659	Frame_Shift_Ins	-	A	p.V109fs
STAD	TCGA-BR-A4QL-01	FAM184A	ENST00000368475.4,ENST00000521531.1,ENST00000352896.5,ENST00000522284.1,ENST00000338891.7	chr6	119341142:119341324:119344109:119344245:119345123:119345978,	119344110	119344245	119344234	119344234	Frame_Shift_Del	T	-	p.Q343fs
STAD	TCGA-BR-A4QL-01	CABIN1	ENST00000398319.2,ENST00000405822.2,ENST00000263119.5	chr22	24567680:24567963:24573471:24573785:24574020:24574595,24572078:24572243:24573471:24573785:24574020:24574595,	24573472	24573785	24573647	24573647	Frame_Shift_Del	C	-	p.R2127fs
STAD	TCGA-BR-A4QL-01	ZRANB2	ENST00000370920.3,ENST00000254821.6	chr1	71542477:71542560:71544139:71544248:71544338:71544391,	71544140	71544248	71544212	71544212	Frame_Shift_Del	C	-	p.G49fs
STAD	TCGA-BR-A4QL-01	POLD3	ENST00000532497.1,ENST00000263681.2,ENST00000527458.1	chr11	74329581:74329849:74331061:74331134:74336452:74336618,	74331062	74331134	74331113	74331113	Frame_Shift_Del	T	-	p.N237fs
STAD	TCGA-BR-A4QL-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204210502:204210609:204210812:204210942:204213991:204214131,	204210813	204210942	204210890	204210891	Frame_Shift_Ins	-	G	p.L742fs
STAD	TCGA-BR-A4QL-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124332920:124333415:124335177:124335306:124338132:124338266,	124335178	124335306	124335279	124335279	Frame_Shift_Del	T	-	p.S1344fs
STAD	TCGA-BR-A4QL-01	NAIP	ENST00000523981.1,ENST00000194097.4,ENST00000508426.2,ENST00000503719.2,ENST00000517649.1,ENST00000315147.8	chr5	70266073:70266295:70269955:70270120:70271986:70272055,	70269956	70270120	70269991	70269991	Frame_Shift_Del	A	-	p.F1271fs
STAD	TCGA-BR-A4QL-01	SOAT1	ENST00000540564.1	chr1	179292571:179292630:179304640:179304792:179306971:179307031,179271811:179271937:179304640:179304792:179306971:179307031,	179304641	179304792	179304653	179304653	Frame_Shift_Del	T	-	p.P63fs
STAD	TCGA-BR-A4QL-01	CACNA1A	ENST00000360228.5,ENST00000573710.2	chr19	13394080:13394210:13395881:13396020:13397316:13397780,	13395882	13396020	13395983	13395983	Frame_Shift_Del	T	-	p.E1199fs
STAD	TCGA-BR-A4QL-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68264112:68264218:68264291:68264457:68264743:68264930,	68264292	68264457	68264452	68264452	Frame_Shift_Del	G	-	p.P635fs
STAD	TCGA-BR-A4QL-01	NOL9	ENST00000377705.5	chr1	6604885:6604982:6605104:6605240:6609630:6609758,	6605105	6605240	6605171	6605171	Frame_Shift_Del	T	-	p.R272fs
STAD	TCGA-BR-A4QL-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377518	77377518	Frame_Shift_Del	A	-	p.S1357X
STAD	TCGA-BR-A4QL-01	HPGDS	ENST00000295256.5,ENST00000514774.1	chr4	95229784:95229894:95239023:95239116:95255647:95255789,	95239024	95239116	95239029	95239029	Frame_Shift_Del	T	-	p.N74fs
STAD	TCGA-BR-A4QL-01	SLC9B1	ENST00000296422.7,ENST00000394789.3,ENST00000514972.1	chr4	103867803:103867946:103870413:103870584:103910956:103911098,	103870414	103870584	103870488	103870489	Frame_Shift_Ins	-	A	p.Y103fs
STAD	TCGA-BR-A4QL-01	ZNF496	ENST00000294753.4	chr1	247473625:247473758:247486455:247486532:247491984:247492168,	247486456	247486532	247486457	247486457	Frame_Shift_Del	G	-	p.P217fs
STAD	TCGA-BR-A4QL-01	CPAMD8	ENST00000443236.1	chr19	17091306:17091496:17100452:17100581:17104225:17104396,	17100453	17100581	17100545	17100545	Frame_Shift_Del	C	-	p.A482fs
STAD	TCGA-BR-A4QL-01	FNIP2	ENST00000264433.6,ENST00000512986.1,ENST00000379346.3	chr4	159780729:159780818:159782493:159782640:159782758:159782928,	159782494	159782640	159782570	159782571	Frame_Shift_Ins	-	A	p.E409fs
STAD	TCGA-BR-A4QL-01	ELN	ENST00000252034.7,ENST00000380576.5,ENST00000358929.4,ENST00000380562.4,ENST00000320492.7,ENST00000414324.1,ENST00000320399.6,ENST00000458204.1	chr7	73480023:73480062:73480273:73480327:73481061:73481106,	73480274	73480327	73480300	73480300	Frame_Shift_Del	G	-	p.L686fs
STAD	TCGA-BR-A4QL-01	TBC1D16	ENST00000570373.1,ENST00000572862.1,ENST00000574241.2,ENST00000340848.7,ENST00000310924.2,ENST00000574427.1,ENST00000576768.1,ENST00000573782.1	chr17	77921493:77921630:77922670:77922805:77923515:77923622,	77922671	77922805	77922699	77922699	Frame_Shift_Del	C	-	p.E505fs
STAD	TCGA-BR-A4QL-01	SUMF1	ENST00000383843.5	chr3	4490949:4491024:4494559:4494733:4508659:4508929,4461747:4461830:4494559:4494733:4508659:4508929,	4494560	4494733	4494631	4494631	Frame_Shift_Del	A	-	p.Y125fs
STAD	TCGA-BR-A4QL-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850287	118850287	Frame_Shift_Del	C	-	p.R173fs
STAD	TCGA-BR-A4QL-01	SPAG17	ENST00000336338.5	chr1	118565926:118566086:118567860:118568039:118570896:118571017,	118567861	118568039	118567980	118567980	Frame_Shift_Del	G	-	p.Q1264fs
STAD	TCGA-BR-A4QL-01	ALG11	ENST00000521508.1	chr13	52586549:52586598:52593048:52593279:52598141:52599073,	52593049	52593279	52593050	52593050	Frame_Shift_Del	T	-	p.R15fs
STAD	TCGA-BR-A4QL-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.P202fs
STAD	TCGA-BR-A4QL-01	SAAL1	ENST00000524803.1	chr11	18102957:18103050:18105081:18105278:18108412:18108507,	18105082	18105278	18105214	18105214	Frame_Shift_Del	T	-	p.P370fs
STAD	TCGA-BR-A4QL-01	SAAL1	ENST00000534721.1	chr11	18102957:18103050:18105081:18105256:18108412:18108507,	18105082	18105256	18105214	18105214	Frame_Shift_Del	T	-	p.P370fs
STAD	TCGA-BR-A4QL-01	SAAL1	ENST00000300013.4	chr11	18102957:18103050:18105081:18105275:18108412:18108507,	18105082	18105275	18105214	18105214	Frame_Shift_Del	T	-	p.P370fs
STAD	TCGA-BR-A4QL-01	ALG13	ENST00000394780.3,ENST00000470971.1,ENST00000251943.4,ENST00000436609.1	chrX	110970559:110970673:110970841:110970998:110971412:110971533,	110970842	110970998	110970903	110970904	Frame_Shift_Ins	-	C	p.T718fs
STAD	TCGA-BR-A4QL-01	SLC24A5	ENST00000341459.3,ENST00000449382.2	chr15	48428967:48429160:48431165:48431372:48433309:48433411,	48431166	48431372	48431210	48431211	Frame_Shift_Ins	-	T	p.I306fs
STAD	TCGA-BR-A4QL-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138452697	138452697	Frame_Shift_Del	A	-	p.N183fs
STAD	TCGA-BR-A4QL-01	REV3L	ENST00000470871.1,ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111708967:111709116:111709203:111709288:111710308:111710413,	111709204	111709288	111709248	111709248	Frame_Shift_Del	A	-	p.Q302fs
STAD	TCGA-BR-A4QL-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413803	43413803	Frame_Shift_Del	T	-	p.V135fs
STAD	TCGA-D7-5579-01	FMR1	ENST00000495717.1	chrX	147003450:147003503:147007057:147007151:147009839:147009911,147003450:147003503:147007057:147007151:147010176:147010325,	147007058	147007151	147007109	147007115	Frame_Shift_Del	TGTAGGT	-	p.52_54del
STAD	TCGA-BR-A4PD-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138376531:138376677:138382747:138382871:138383877:138384045,	138382748	138382871	138382755	138382756	Frame_Shift_Ins	-	T	p.T930fs
STAD	TCGA-CD-8532-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53227671:53227819:53227945:53228070:53228158:53228340,	53227946	53228070	53228037	53228038	Frame_Shift_Ins	-	A	p.M759fs
STAD	TCGA-CD-8532-01	ATP1A1	ENST00000369494.1,ENST00000537345.1,ENST00000418797.1,ENST00000295598.5,ENST00000369496.4	chr1	116927404:116927464:116929909:116930113:116930752:116930777,	116929910	116930113	116930017	116930018	Frame_Shift_Ins	-	G	p.F97fs
STAD	TCGA-CG-4465-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1	chr3	56597711:56598153:56600621:56600787:56600977:56601081,	56600622	56600787	56600689	56600690	Frame_Shift_Ins	-	A	p.F204fs
STAD	TCGA-CG-4465-01	CCDC66	ENST00000434467.1,ENST00000341455.6	chr3	56597711:56598153:56600621:56600768:56600977:56601081,	56600622	56600768	56600689	56600690	Frame_Shift_Ins	-	A	p.F204fs
STAD	TCGA-CG-4465-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88665027:88665120:88666198:88666356:88675341:88675459,	88666199	88666356	88666204	88666204	Frame_Shift_Del	A	-	p.L312X
STAD	TCGA-CG-4465-01	THSD4	ENST00000355327.3,ENST00000261862.6	chr15	71548951:71549054:71704025:71704162:71952868:71953073,	71704026	71704162	71704113	71704113	Frame_Shift_Del	C	-	p.T368fs
STAD	TCGA-CG-4465-01	ROBO4	ENST00000306534.3,ENST00000533054.1	chr11	124754936:124755143:124756359:124756718:124756872:124756995,	124756360	124756718	124756593	124756593	Frame_Shift_Del	C	-	p.G854fs
STAD	TCGA-CG-4465-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114278230	114278230	Frame_Shift_Del	A	-	p.E2819fs
STAD	TCGA-CG-4465-01	STK11IP	ENST00000495941.1,ENST00000295641.10,ENST00000447191.1,ENST00000413891.1,ENST00000456909.1	chr2	220478637:220478652:220478882:220478964:220479197:220479268,	220478883	220478964	220478946	220478946	Frame_Shift_Del	C	-	p.T938fs
STAD	TCGA-CG-4465-01	SLAIN1	ENST00000358679.3,ENST00000351546.3,ENST00000474663.1,ENST00000488699.1,ENST00000466548.1,ENST00000441784.1,ENST00000442759.1,ENST00000418532.1,ENST00000267219.8	chr13	78318417:78318567:78320648:78320990:78327337:78327376,	78320649	78320990	78320722	78320722	Frame_Shift_Del	A	-	p.G330fs
STAD	TCGA-CG-4465-01	CD22	ENST00000270311.6,ENST00000598815.1,ENST00000419549.2,ENST00000085219.5,ENST00000536635.2,ENST00000594250.1,ENST00000341773.6,ENST00000544992.2,ENST00000601769.1	chr19	35832003:35832041:35832245:35832509:35832604:35832627,	35832246	35832509	35832248	35832249	Frame_Shift_Ins	-	C	p.A504fs
STAD	TCGA-CG-4465-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70594418:70594578:70617265:70617464:70650274:70650439,	70617266	70617464	70617403	70617403	Frame_Shift_Del	T	-	p.L496X
STAD	TCGA-CG-4465-01	DBT	ENST00000370131.3,ENST00000370132.4	chr1	100684181:100684303:100696288:100696470:100700991:100701067,	100696289	100696470	100696362	100696362	Frame_Shift_Del	T	-	p.L121fs
STAD	TCGA-CG-4465-01	NKAP	ENST00000371410.3	chrX	119070574:119070645:119072692:119072773:119077182:119077735,	119072693	119072773	119072752	119072753	Frame_Shift_Del	TC	-	p.136_137del
STAD	TCGA-CG-4465-01	SOAT1	ENST00000540564.1	chr1	179292571:179292630:179304640:179304792:179306971:179307031,179271811:179271937:179304640:179304792:179306971:179307031,	179304641	179304792	179304653	179304653	Frame_Shift_Del	T	-	p.P63fs
STAD	TCGA-CG-4465-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000446180.1,ENST00000388738.3	chr4	123164152:123164223:123165008:123165182:123166174:123166295,	123165009	123165182	123165029	123165029	Frame_Shift_Del	A	-	p.E1588fs
STAD	TCGA-CG-4465-01	PAM	ENST00000438793.3,ENST00000346918.2,ENST00000274392.9,ENST00000345721.2,ENST00000304400.7,ENST00000379787.4,ENST00000455264.2,ENST00000379799.3	chr5	102296867:102296933:102309819:102310140:102325975:102326105,	102309820	102310140	102309949	102309949	Frame_Shift_Del	A	-	p.Q431fs
STAD	TCGA-CG-4465-01	ALAS2	ENST00000463868.1,ENST00000493869.1,ENST00000330807.5,ENST00000335854.4	chrX	55051150:55051273:55052252:55052448:55057374:55057410,	55052253	55052448	55052384	55052384	Frame_Shift_Del	C	-	p.G41fs
STAD	TCGA-CG-4465-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3	chr12	105583768:105583933:105589038:105589127:105589222:105589279,	105589039	105589127	105589059	105589059	Frame_Shift_Del	T	-	p.Q414fs
STAD	TCGA-CG-4465-01	SDSL	ENST00000553248.1,ENST00000403593.4,ENST00000345635.4	chr12	113866224:113866264:113866964:113867104:113871938:113872027,	113866965	113867104	113867031	113867032	Frame_Shift_Ins	-	C	p.L94fs
STAD	TCGA-CG-4465-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562346	32562346	Frame_Shift_Del	A	-	p.E824fs
STAD	TCGA-CG-4465-01	ATRAID	ENST00000606999.1	chr2	27435237:27435475:27436044:27436166:27438188:27438260,27435178:27435335:27436044:27436166:27438188:27438260,	27436045	27436166	27436083	27436083	Frame_Shift_Del	A	-	p.S101X
STAD	TCGA-CG-4465-01	CCDC178	ENST00000583930.1,ENST00000406524.2,ENST00000383096.3,ENST00000402325.1,ENST00000579947.1,ENST00000300227.8,ENST00000403303.1	chr18	30847165:30847261:30873122:30873276:30903454:30903597,	30873123	30873276	30873148	30873148	Frame_Shift_Del	T	-	p.N384fs
STAD	TCGA-CG-4465-01	MDC1	ENST00000376405.2,ENST00000489540.1,ENST00000376406.3	chr6	30670528:30670654:30670880:30671063:30671194:30671292,	30670881	30671063	30671005	30671005	Frame_Shift_Del	C	-	p.G1914fs
STAD	TCGA-CG-4465-01	MS4A8	ENST00000300226.2	chr11	60474460:60474520:60476122:60476254:60482493:60482607,	60476123	60476254	60476247	60476247	Frame_Shift_Del	G	-	p.W176fs
STAD	TCGA-CG-4465-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000524446.1	chr11	9166608:9166660:9167216:9167362:9171627:9171720,9166608:9166660:9167216:9167362:9168576:9168698,	9167217	9167362	9167317	9167317	Frame_Shift_Del	C	-	p.G968fs
STAD	TCGA-CG-4465-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42053936:42054048:42054326:42054560:42057083:42057260,	42054327	42054560	42054515	42054516	Frame_Shift_Ins	-	G	p.R2567fs
STAD	TCGA-CG-4465-01	LARP4	ENST00000347328.5	chr12	50835372:50835426:50848096:50848200:50854917:50855130,	50848097	50848200	50848191	50848191	Frame_Shift_Del	A	-	p.Q371fs
STAD	TCGA-CG-4465-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16328093	16328093	Frame_Shift_Del	G	-	p.P150fs
STAD	TCGA-CG-4465-01	GLI2	ENST00000361492.4,ENST00000452319.1,ENST00000435313.2,ENST00000314490.11	chr2	121684936:121685042:121708818:121709021:121712820:121713006,	121708819	121709021	121708914	121708914	Frame_Shift_Del	C	-	p.A117fs
STAD	TCGA-CG-4465-01	ULK1	ENST00000541761.1,ENST00000321867.4	chr12	132401497:132401607:132401955:132402099:132403041:132403226,	132401956	132402099	132402066	132402066	Frame_Shift_Del	C	-	p.T764fs
STAD	TCGA-CG-4465-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788022	17788023	Frame_Shift_Ins	-	T	p.V1116fs
STAD	TCGA-CG-4465-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046886	17046886	Frame_Shift_Del	C	-	p.A351fs
STAD	TCGA-CG-4465-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088682	27088682	Frame_Shift_Del	C	-	p.S764fs
STAD	TCGA-CG-4465-01	PLAC8	ENST00000509973.1	chr4	84015830:84015944:84026048:84026173:84028956:84029103,84015830:84015944:84026048:84026173:84035818:84035868,	84026049	84026173	84026050	84026050	Frame_Shift_Del	G	-	p.P81fs
STAD	TCGA-CG-4465-01	CELSR1	ENST00000262738.3,ENST00000473624.1	chr22	46759892:46760148:46760408:46760633:46761127:46761277,	46760409	46760633	46760471	46760471	Frame_Shift_Del	G	-	p.P2906fs
STAD	TCGA-CG-4465-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-CG-4465-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-CG-4443-01	PDE7A	ENST00000396642.3,ENST00000379419.4,ENST00000401827.3	chr8	66639144:66639201:66639404:66639536:66647028:66647129,	66639405	66639536	66639406	66639415	Frame_Shift_Del	TTGTATAAAG	-	p.273_276del
STAD	TCGA-CG-4443-01	TTLL5	ENST00000554510.1,ENST00000298832.9,ENST00000557636.1,ENST00000556893.1	chr14	76286349:76286504:76330009:76330205:76349027:76349245,	76330010	76330205	76330068	76330110	Frame_Shift_Del	CAGGCTACAGGGGTGGTCCCCCAGCACAAGTATCACCCCACAG	-	p.1128_1142del
STAD	TCGA-BR-8077-01	SRBD1	ENST00000535761.1,ENST00000490133.1,ENST00000263736.4	chr2	45616231:45616738:45620083:45620268:45640252:45640432,	45620084	45620268	45620206	45620207	Frame_Shift_Ins	-	T	p.I859fs
STAD	TCGA-BR-8077-01	A2ML1	ENST00000299698.7,ENST00000539547.1,ENST00000541459.1	chr12	9008104:9008188:9009759:9009936:9010102:9010184,	9009760	9009936	9009920	9009920	Frame_Shift_Del	G	-	p.V1003fs
STAD	TCGA-BR-8687-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938407	44938480	Frame_Shift_Del	TACTAAAACTTTGGTGGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGTTGCAGCCAGCAGATG	-	p.985_1009del
STAD	TCGA-IN-8663-01	PEAK1	ENST00000312493.4,ENST00000560626.2	chr15	77400499:77407661:77425346:77426092:77450844:77451038,	77425347	77426092	77425646	77425647	Frame_Shift_Ins	-	C	p.P1260fs
STAD	TCGA-IN-8663-01	KSR1	ENST00000581975.1	chr17	25919583:25919652:25924293:25924462:25930859:25930914,	25924294	25924462	25924413	25924414	Frame_Shift_Ins	-	C	p.T336fs
STAD	TCGA-BR-8297-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121039	95121040	Frame_Shift_Ins	-	A	p.V186fs
STAD	TCGA-BR-4370-01	U2AF2	ENST00000308924.4,ENST00000450554.2	chr19	56172403:56172555:56173867:56173984:56174971:56175110,	56173868	56173984	56173906	56173906	Frame_Shift_Del	G	-	p.L175fs
STAD	TCGA-BR-4370-01	GYG1	ENST00000461191.1	chr3	148714617:148714691:148727062:148727189:148741839:148742021,148714617:148714691:148727062:148727189:148744546:148745134,148714528:148714679:148727062:148727189:148741839:148742042,	148727063	148727189	148727089	148727089	Frame_Shift_Del	T	-	p.T169fs
STAD	TCGA-BR-4370-01	IKZF5	ENST00000496605.1	chr10	124755662:124755692:124758008:124758174:124766541:124766692,	124758009	124758174	124758127	124758127	Frame_Shift_Del	T	-	p.P6fs
STAD	TCGA-BR-4370-01	IKZF5	ENST00000368886.5	chr10	124755662:124755692:124758008:124758187:124766541:124766692,	124758009	124758187	124758127	124758127	Frame_Shift_Del	T	-	p.P6fs
STAD	TCGA-BR-4370-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730307	1730308	Frame_Shift_Ins	-	C	p.D393fs
STAD	TCGA-BR-4370-01	FKTN	ENST00000223528.2,ENST00000602526.1,ENST00000602661.1,ENST00000457847.1,ENST00000448551.2,ENST00000357998.5	chr9	108380239:108380373:108382214:108382342:108397331:108397429,	108382215	108382342	108382331	108382331	Frame_Shift_Del	A	-	p.G387fs
STAD	TCGA-BR-4370-01	CACNA1A	ENST00000360228.5,ENST00000573710.2	chr19	13394080:13394210:13395881:13396020:13397316:13397780,	13395882	13396020	13395982	13395983	Frame_Shift_Ins	-	T	p.E1199fs
STAD	TCGA-BR-4370-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299560	107299560	Frame_Shift_Del	T	-	p.E467fs
STAD	TCGA-BR-4370-01	SETDB2	ENST00000258672.5,ENST00000317257.8,ENST00000354234.4	chr13	50056872:50057098:50057599:50057699:50059765:50059859,	50057600	50057699	50057691	50057691	Frame_Shift_Del	A	-	p.G503fs
STAD	TCGA-BR-4370-01	USP9X	ENST00000462850.1,ENST00000324545.8,ENST00000378308.2	chrX	41055503:41055612:41055844:41055991:41056616:41056763,	41055845	41055991	41055854	41055855	Frame_Shift_Del	AG	-	p.1365_1366del
STAD	TCGA-BR-4370-01	CDAN1	ENST00000356231.3	chr15	43023408:43023529:43023817:43024023:43024530:43024606,	43023818	43024023	43023871	43023871	Frame_Shift_Del	G	-	p.T563fs
STAD	TCGA-BR-4370-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320989	152320989	Frame_Shift_Del	A	-	p.E1652fs
STAD	TCGA-BR-4370-01	CPNE6	ENST00000397016.2,ENST00000537691.1,ENST00000216775.2,ENST00000558995.1,ENST00000460657.1	chr14	24546362:24546599:24546801:24546976:24547096:24547204,	24546802	24546976	24546805	24546806	Frame_Shift_Ins	-	C	p.A514fs
STAD	TCGA-BR-4370-01	RNF32	ENST00000432459.2	chr7	156433572:156433649:156436494:156436586:156437192:156437233,156433464:156433505:156436494:156436586:156437192:156437233,156433477:156433698:156436494:156436586:156437192:156437233,	156436495	156436586	156436577	156436577	Frame_Shift_Del	A	-	p.L2X
STAD	TCGA-BR-4370-01	NADK	ENST00000489538.1	chr1	1686812:1686915:1687696:1687782:1687941:1688047,1686110:1686137:1687696:1687782:1687941:1688047,	1687697	1687782	1687734	1687734	Frame_Shift_Del	C	-	p.G328fs
STAD	TCGA-BR-4370-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1,ENST00000527339.1	chr11	65313912:65314035:65314268:65314391:65314909:65315036,	65314269	65314391	65314283	65314283	Frame_Shift_Del	C	-	p.G739fs
STAD	TCGA-BR-4370-01	CDHR2	ENST00000261944.5,ENST00000510636.1,ENST00000506348.1	chr5	176017425:176017486:176017563:176017688:176018210:176018324,	176017564	176017688	176017671	176017672	Frame_Shift_Ins	-	GT	p.F1174fs
STAD	TCGA-BR-4370-01	B9D1	ENST00000582857.1,ENST00000268841.6,ENST00000395615.1,ENST00000440841.1,ENST00000261499.4,ENST00000395616.3,ENST00000477683.1,ENST00000461069.2	chr17	19261152:19261264:19263632:19263701:19281171:19281203,19261152:19261264:19263632:19263701:19265819:19265855,	19263633	19263701	19263639	19263639	Frame_Shift_Del	G	-	p.P62fs
STAD	TCGA-BR-4370-01	PLOD2	ENST00000360060.3,ENST00000282903.5,ENST00000494950.1,ENST00000469350.1	chr3	145824318:145824431:145828071:145828235:145838898:145839035,	145828072	145828235	145828190	145828190	Frame_Shift_Del	T	-	p.F129fs
STAD	TCGA-BR-4370-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000346562.2,ENST00000357798.5,ENST00000548645.1,ENST00000552874.1	chr14	34204446:34204538:34243542:34243736:34247671:34247778,	34243543	34243736	34243648	34243648	Frame_Shift_Del	C	-	p.P319fs
STAD	TCGA-BR-4370-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724115	230724116	Frame_Shift_Ins	-	T	p.P92fs
STAD	TCGA-BR-4370-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101268	27101268	Frame_Shift_Del	C	-	p.A1517fs
STAD	TCGA-BR-4370-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000445419.2,ENST00000505222.1,ENST00000503631.1	chr6	82883083:82883155:82891595:82891745:82900789:82900933,	82891596	82891745	82891683	82891683	Frame_Shift_Del	T	-	p.K1213fs
STAD	TCGA-BR-4370-01	UBXN7	ENST00000535858.1,ENST00000429160.1,ENST00000296328.4,ENST00000428095.1	chr3	196094898:196095026:196096291:196096382:196098766:196098913,	196096292	196096382	196096324	196096324	Frame_Shift_Del	A	-	p.F225fs
STAD	TCGA-BR-4370-01	INTS8	ENST00000523206.1,ENST00000524333.1	chr8	95844219:95844402:95848751:95848859:95850690:95850846,95844219:95844402:95848751:95848859:95850721:95850846,	95848752	95848859	95848830	95848830	Frame_Shift_Del	T	-	p.K277fs
STAD	TCGA-BR-4370-01	LAMA4	ENST00000389463.4,ENST00000424408.2,ENST00000521693.1,ENST00000230538.7,ENST00000604740.1,ENST00000522006.1	chr6	112443263:112443404:112450123:112450277:112451077:112451190,	112450124	112450277	112450166	112450166	Frame_Shift_Del	T	-	p.G1416fs
STAD	TCGA-BR-4370-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1,ENST00000600166.1	chr7	117292896:117292985:117304741:117304914:117305512:117305618,	117304742	117304914	117304765	117304766	Frame_Shift_Del	AC	-	p.1329_1329del
STAD	TCGA-BR-4370-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527420	115527421	Frame_Shift_Ins	-	A	p.S878fs
STAD	TCGA-BR-4370-01	TM9SF2	ENST00000376387.4	chr13	100189992:100190117:100191699:100191811:100192967:100193047,	100191700	100191811	100191740	100191740	Frame_Shift_Del	C	-	p.G252fs
STAD	TCGA-BR-4370-01	SCAP	ENST00000265565.5	chr3	47458611:47458697:47458793:47459316:47459623:47459739,	47458794	47459316	47459204	47459204	Frame_Shift_Del	G	-	p.L854fs
STAD	TCGA-BR-4370-01	SCAP	ENST00000320017.6,ENST00000441517.2,ENST00000545718.1	chr3	47458611:47458697:47458793:47459313:47459623:47459739,	47458794	47459313	47459204	47459204	Frame_Shift_Del	G	-	p.L854fs
STAD	TCGA-BR-4370-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153590609:153590700:153590785:153590946:153591028:153591152,	153590786	153590946	153590824	153590824	Frame_Shift_Del	C	-	p.A843fs
STAD	TCGA-BR-4370-01	HAGH	ENST00000455446.2	chr16	1866893:1866995:1867168:1867272:1869115:1869224,1866893:1866995:1867168:1867272:1869897:1870015,	1867169	1867272	1867176	1867176	Frame_Shift_Del	G	-	p.P213fs
STAD	TCGA-BR-4370-01	ZNF608	ENST00000505686.1	chr5	123979203:123979376:123979936:123980354:123985302:123985390,	123979937	123980354	123980122	123980122	Frame_Shift_Del	T	-	p.N1313fs
STAD	TCGA-BR-4370-01	RECQL5	ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73624751:73624842:73625013:73625555:73625787:73625922,	73625014	73625555	73625157	73625158	Frame_Shift_Del	TG	-	p.782_783del
STAD	TCGA-BR-4370-01	UTRN	ENST00000367545.3	chr6	144758700:144758882:144759880:144760031:144761487:144761607,	144759881	144760031	144759980	144759980	Frame_Shift_Del	C	-	p.C447fs
STAD	TCGA-BR-4370-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L356fs
STAD	TCGA-BR-4370-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206848	89206848	Frame_Shift_Del	A	-	p.D75fs
STAD	TCGA-BR-4370-01	GABRB2	ENST00000393959.1,ENST00000274547.2	chr5	160720904:160721435:160753374:160753488:160757889:160758134,	160753375	160753488	160753482	160753482	Frame_Shift_Del	A	-	p.Y362fs
STAD	TCGA-BR-4370-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025921	97025921	Frame_Shift_Del	A	-	p.T466fs
STAD	TCGA-BR-4370-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410380	19410381	Frame_Shift_Ins	-	A	p.S149fs
STAD	TCGA-BR-4370-01	TIMM50	ENST00000602265.1,ENST00000314349.4,ENST00000601403.1,ENST00000595961.1,ENST00000607714.1,ENST00000602028.1,ENST00000597666.1,ENST00000544017.1,ENST00000601358.1	chr19	39976826:39976931:39977036:39977135:39978700:39978814,	39977037	39977135	39977066	39977066	Frame_Shift_Del	C	-	p.D312fs
STAD	TCGA-BR-4370-01	SND1	ENST00000354725.3	chr7	127721411:127721553:127724775:127724899:127725762:127725832,	127724776	127724899	127724851	127724851	Frame_Shift_Del	C	-	p.A729fs
STAD	TCGA-BR-4370-01	USP53	ENST00000274030.6,ENST00000450251.1	chr4	120181661:120181808:120182869:120183019:120188474:120188590,	120182870	120183019	120182871	120182871	Frame_Shift_Del	T	-	p.L275fs
STAD	TCGA-BR-4370-01	BMP5	ENST00000446683.2	chr6	55620357:55620480:55625254:55625331:55638846:55639041,	55625255	55625331	55625309	55625309	Frame_Shift_Del	T	-	p.Q351fs
STAD	TCGA-BR-4370-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832436	39832436	Frame_Shift_Del	T	-	p.K374fs
STAD	TCGA-BR-4370-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832436	39832436	Frame_Shift_Del	T	-	p.K374fs
STAD	TCGA-BR-4370-01	SEC23A	ENST00000307712.6,ENST00000537403.1,ENST00000545328.2	chr14	39511989:39512076:39514366:39514528:39517855:39517933,	39514367	39514528	39514487	39514487	Frame_Shift_Del	A	-	p.N594fs
STAD	TCGA-BR-4370-01	ZBTB46	ENST00000245663.4,ENST00000395104.1,ENST00000302995.2	chr20	62384038:62384214:62407030:62407315:62421173:62421212,	62407031	62407315	62407045	62407046	Frame_Shift_Ins	-	C	p.A403fs
STAD	TCGA-BR-4370-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.H72fs
STAD	TCGA-BR-4257-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.H72fs
STAD	TCGA-BR-4257-01	TMCO4	ENST00000489135.1,ENST00000294543.6,ENST00000375122.2,ENST00000375127.1	chr1	20063864:20063949:20066316:20066453:20067269:20067434,	20066317	20066453	20066382	20066382	Frame_Shift_Del	C	-	p.V372fs
STAD	TCGA-BR-4257-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548597	212548597	Frame_Shift_Del	T	-	p.S338fs
STAD	TCGA-BR-4257-01	THYN1	ENST00000392595.2,ENST00000392594.3,ENST00000341541.3	chr11	134118181:134118378:134118702:134118853:134119060:134119156,	134118703	134118853	134118753	134118753	Frame_Shift_Del	T	-	p.N194fs
STAD	TCGA-BR-4257-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778544	84778544	Frame_Shift_Del	A	-	p.K156fs
STAD	TCGA-BR-4257-01	HMGN1	ENST00000464078.1,ENST00000380747.1,ENST00000380749.5	chr21	40717071:40717200:40720217:40720265:40720347:40720371,	40720218	40720265	40720231	40720231	Frame_Shift_Del	T	-	p.K38fs
STAD	TCGA-BR-4257-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948388	169948389	Frame_Shift_Ins	-	A	p.E221fs
STAD	TCGA-BR-4257-01	MBOAT1	ENST00000536798.1,ENST00000324607.7	chr6	20131374:20131430:20144450:20144546:20151415:20151493,	20144451	20144546	20144533	20144534	Frame_Shift_Ins	-	A	p.V113fs
STAD	TCGA-BR-4257-01	PI4KB	ENST00000368872.1	chr1	151282686:151282731:151288048:151288985:151298647:151298724,151280049:151280277:151288048:151288985:151297220:151297393,	151288049	151288985	151288877	151288877	Frame_Shift_Del	C	-	p.S40fs
STAD	TCGA-BR-4257-01	RAB1B	ENST00000311481.6	chr11	66039627:66039723:66039835:66039931:66043274:66043382,	66039836	66039931	66039887	66039888	Frame_Shift_Ins	-	G	p.R79fs
STAD	TCGA-BR-4257-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673635	186673635	Frame_Shift_Del	A	-	p.P6623fs
STAD	TCGA-BR-4257-01	CHI3L2	ENST00000369744.2,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000369748.4	chr1	111778645:111778775:111781371:111781554:111783948:111784065,	111781372	111781554	111781482	111781482	Frame_Shift_Del	G	-	p.V282fs
STAD	TCGA-BR-4257-01	GCC2	ENST00000482325.1,ENST00000309863.6	chr2	109088300:109088572:109089282:109089355:109091990:109092091,	109089283	109089355	109089309	109089309	Frame_Shift_Del	A	-	p.V938fs
STAD	TCGA-BR-4257-01	TTC16	ENST00000373289.3,ENST00000488285.1	chr9	130489548:130489744:130491859:130491947:130492914:130493868,	130491860	130491947	130491862	130491863	Frame_Shift_Ins	-	A	p.E589fs
STAD	TCGA-BR-4257-01	HNF4A	ENST00000316673.4,ENST00000443598.2,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000609795.1,ENST00000316099.4	chr20	43043146:43043302:43047064:43047152:43048360:43048516,	43047065	43047152	43047140	43047140	Frame_Shift_Del	G	-	p.D241fs
STAD	TCGA-BR-4257-01	USP33	ENST00000370793.1,ENST00000370792.3,ENST00000370794.3,ENST00000524536.1,ENST00000357428.1	chr1	78201740:78201843:78204949:78205102:78206561:78206619,	78204950	78205102	78204970	78204970	Frame_Shift_Del	T	-	p.I142fs
STAD	TCGA-BR-4257-01	PRR11	ENST00000581182.1,ENST00000578542.1,ENST00000580177.1	chr17	57233117:57233166:57247108:57247241:57262414:57262565,	57247109	57247241	57247171	57247172	Frame_Shift_Del	AA	-	p.19_20del
STAD	TCGA-BR-4257-01	NEK4	ENST00000233027.5,ENST00000383721.4,ENST00000535191.1,ENST00000461689.1	chr3	52794810:52794952:52797485:52797640:52799902:52800010,	52797486	52797640	52797501	52797501	Frame_Shift_Del	A	-	p.L269fs
STAD	TCGA-BR-4257-01	L2HGDH	ENST00000555610.1,ENST00000421284.3,ENST00000555423.1,ENST00000267436.4	chr14	50768734:50768886:50769619:50769735:50778728:50778865,	50769620	50769735	50769634	50769634	Frame_Shift_Del	T	-	p.K81fs
STAD	TCGA-BR-4257-01	UBE2M	ENST00000595957.1,ENST00000253023.3,ENST00000596985.1	chr19	59067682:59067746:59068053:59068157:59068258:59068297,	59068054	59068157	59068128	59068128	Frame_Shift_Del	G	-	p.K92fs
STAD	TCGA-BR-4257-01	NPHP3	ENST00000326682.8,ENST00000337331.5,ENST00000469232.1,ENST00000343113.4	chr3	132437837:132437988:132438548:132438674:132440806:132440851,	132438549	132438674	132438596	132438597	Frame_Shift_Del	CT	-	p.158_158del
STAD	TCGA-BR-4257-01	IRF2	ENST00000393593.3	chr4	185320068:185320233:185329311:185329429:185339320:185339367,	185329312	185329429	185329341	185329341	Frame_Shift_Del	T	-	p.N167fs
STAD	TCGA-BR-4257-01	MFSD8	ENST00000513559.1,ENST00000296468.3,ENST00000515130.1	chr4	128854139:128854248:128861007:128861152:128864906:128865147,128859937:128859993:128861007:128861152:128864906:128865147,128859937:128859993:128861007:128861152:128863199:128863304,	128861008	128861152	128861148	128861148	Frame_Shift_Del	A	-	p.Q187fs
STAD	TCGA-BR-4257-01	CERCAM	ENST00000372842.1,ENST00000372838.4,ENST00000420512.1	chr9	131185424:131185542:131186416:131186551:131186688:131186893,	131186417	131186551	131186544	131186544	Frame_Shift_Del	C	-	p.T185fs
STAD	TCGA-BR-4257-01	GRIK3	ENST00000373091.3,ENST00000373093.4	chr1	37337788:37337970:37346234:37346492:37356520:37356697,	37346235	37346492	37346390	37346391	Frame_Shift_Ins	-	G	p.H132fs
STAD	TCGA-BR-4257-01	CCDC90B	ENST00000528149.1,ENST00000455220.2,ENST00000525503.1,ENST00000529689.1,ENST00000529611.1,ENST00000527025.1,ENST00000529745.1,ENST00000529856.1,ENST00000534753.1,ENST00000529312.1,ENST00000260054.4	chr11	82972970:82973008:82984689:82984743:82984835:82984907,82976957:82977021:82984689:82984743:82984835:82984907,	82984690	82984743	82984691	82984691	Frame_Shift_Del	T	-	p.K198fs
STAD	TCGA-BR-4257-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P235fs
STAD	TCGA-BR-4257-01	SLC2A6	ENST00000371899.4,ENST00000432868.1	chr9	136342156:136342363:136343375:136343538:136344089:136344197,	136343376	136343538	136343522	136343522	Frame_Shift_Del	T	-	p.R37fs
STAD	TCGA-BR-4257-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155450116	155450116	Frame_Shift_Del	T	-	p.I849fs
STAD	TCGA-BR-4257-01	SLC35F3	ENST00000366618.3,ENST00000366617.3	chr1	234367162:234367487:234444846:234445066:234452347:234452473,	234444847	234445066	234444893	234444893	Frame_Shift_Del	T	-	p.V218fs
STAD	TCGA-BR-4257-01	KPNA3	ENST00000261667.3	chr13	50276521:50276616:50279756:50279919:50280233:50280305,	50279757	50279919	50279819	50279819	Frame_Shift_Del	T	-	p.N437fs
STAD	TCGA-BR-4257-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
STAD	TCGA-BR-4257-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624320	117624320	Frame_Shift_Del	A	-	p.E145fs
STAD	TCGA-BR-4257-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449753	155449753	Frame_Shift_Del	T	-	p.I970fs
STAD	TCGA-BR-4257-01	ESR2	ENST00000353772.3,ENST00000554572.1,ENST00000358599.5,ENST00000555278.1,ENST00000344288.6,ENST00000554520.1,ENST00000357782.2,ENST00000542956.1,ENST00000267525.6,ENST00000341099.4,ENST00000556275.1,ENST00000557772.1,ENST00000553796.1	chr14	64735512:64735629:64746698:64746871:64749341:64749560,	64746699	64746871	64746715	64746715	Frame_Shift_Del	A	-	p.K174fs
STAD	TCGA-BR-4257-01	KIAA0556	ENST00000261588.4	chr16	27751361:27752241:27760904:27761627:27763039:27763245,	27760905	27761627	27761235	27761235	Frame_Shift_Del	G	-	p.W985fs
STAD	TCGA-BR-4257-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.M2803fs
STAD	TCGA-BR-4257-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160293220:160293320:160295332:160295442:160302237:160302347,	160295333	160295442	160295427	160295427	Frame_Shift_Del	T	-	p.N171fs
STAD	TCGA-BR-4257-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253746	55253746	Frame_Shift_Del	T	-	p.I497fs
STAD	TCGA-BR-4257-01	ATP8A1	ENST00000381668.5,ENST00000514372.1,ENST00000506602.1,ENST00000264449.10	chr4	42425633:42425722:42445581:42445689:42446594:42446651,	42445582	42445689	42445639	42445639	Frame_Shift_Del	A	-	p.G1023fs
STAD	TCGA-BR-4257-01	NCF2	ENST00000420553.1,ENST00000367535.3,ENST00000419402.1,ENST00000418089.1,ENST00000413720.1,ENST00000367536.1	chr1	183532568:183532720:183533139:183533165:183534838:183534914,	183533140	183533165	183533152	183533152	Frame_Shift_Del	T	-	p.E339fs
STAD	TCGA-BR-4257-01	CAB39L	ENST00000409130.1,ENST00000409308.1,ENST00000425242.1,ENST00000410043.1,ENST00000347776.5,ENST00000355854.4	chr13	49884787:49885129:49906082:49906226:49913812:49913878,	49906083	49906226	49906086	49906086	Frame_Shift_Del	A	-	p.K278fs
STAD	TCGA-BR-4257-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
STAD	TCGA-BR-8370-01	TNKS1BP1	ENST00000528882.1	chr11	57085291:57085361:57087538:57088186:57089265:57089424,	57087539	57088186	57087864	57087864	Frame_Shift_Del	T	-	p.G140fs
STAD	TCGA-BR-8370-01	TNKS1BP1	ENST00000532437.1,ENST00000358252.3	chr11	57085291:57085361:57087552:57088186:57089265:57089424,	57087553	57088186	57087864	57087864	Frame_Shift_Del	T	-	p.G140fs
STAD	TCGA-BR-8370-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593405	48593406	Frame_Shift_Ins	-	GT	p.G386fs
STAD	TCGA-BR-A4PE-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1017061	1017061	Frame_Shift_Del	T	-	p.T1914fs
STAD	TCGA-BR-A4PE-01	RHBDD1	ENST00000409053.1,ENST00000392062.2,ENST00000341329.3,ENST00000473218.1	chr2	227771566:227771597:227773537:227773594:227778923:227779067,	227773538	227773594	227773563	227773563	Frame_Shift_Del	C	-	p.Y227fs
STAD	TCGA-BR-8591-01	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204144781:204144836:204150334:204150455:204154487:204154599,	204150335	204150455	204150354	204150354	Frame_Shift_Del	T	-	p.C290fs
STAD	TCGA-BR-8591-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296505	101296506	Frame_Shift_Del	AC	-	p.107_107del
STAD	TCGA-BR-8591-01	PIEZO2	ENST00000538948.1,ENST00000285141.4,ENST00000503781.3,ENST00000579151.1,ENST00000580640.1,ENST00000582913.1,ENST00000302079.6	chr18	10677743:10677872:10680195:10680368:10681657:10681725,	10680196	10680368	10680211	10680212	Frame_Shift_Ins	-	A	p.S2533fs
STAD	TCGA-BR-8591-01	FGG	ENST00000404648.3,ENST00000405164.1,ENST00000492082.1	chr4	155525324:155525506:155526048:155526218:155527856:155527974,	155526049	155526218	155526202	155526202	Frame_Shift_Del	T	-	p.A383fs
STAD	TCGA-BR-8591-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561448	142561448	Frame_Shift_Del	G	-	p.P53fs
STAD	TCGA-BR-8591-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624320	117624320	Frame_Shift_Del	A	-	p.E145fs
STAD	TCGA-BR-8591-01	GOLT1B	ENST00000539663.1,ENST00000539025.1	chr12	21660050:21660085:21661316:21661495:21665228:21665310,21659818:21659910:21661316:21661495:21665228:21665310,21654786:21654882:21661316:21661495:21665228:21665310,21660877:21661043:21661316:21661495:21665228:21665310,	21661317	21661495	21661406	21661406	Frame_Shift_Del	T	-	p.G69fs
STAD	TCGA-BR-8591-01	MMP10	ENST00000279441.4	chr11	102645918:102646052:102647010:102647155:102647342:102647507,	102647011	102647155	102647034	102647035	Frame_Shift_Ins	-	C	p.G303fs
STAD	TCGA-BR-8591-01	RHBDF2	ENST00000389760.4,ENST00000587640.1,ENST00000591885.1,ENST00000313080.4	chr17	74472911:74473106:74473261:74473380:74473738:74473813,	74473262	74473380	74473337	74473337	Frame_Shift_Del	G	-	p.P311fs
STAD	TCGA-BR-8591-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6413286	6413286	Frame_Shift_Del	C	-	p.P330fs
STAD	TCGA-BR-8591-01	MPC2	ENST00000271373.4,ENST00000367846.4	chr1	167887305:167887597:167889216:167889328:167889784:167889869,	167889217	167889328	167889284	167889284	Frame_Shift_Del	A	-	p.W94X
STAD	TCGA-BR-8591-01	GATA3	ENST00000379328.3	chr10	8097249:8097859:8100267:8100804:8105955:8106101,	8100268	8100804	8100728	8100728	Frame_Shift_Del	C	-	p.F234fs
STAD	TCGA-BR-8591-01	MCPH1	ENST00000344683.5	chr8	6357372:6357450:6478974:6479212:6500514:6500891,	6478975	6479212	6479066	6479067	Frame_Shift_Ins	-	C	p.S769fs
STAD	TCGA-BR-8591-01	MTX2	ENST00000249442.6,ENST00000392529.2,ENST00000443241.1,ENST00000420864.1	chr2	177193601:177193640:177194028:177194154:177195311:177195388,	177194029	177194154	177194090	177194090	Frame_Shift_Del	A	-	p.Q160fs
STAD	TCGA-BR-8591-01	NFIA	ENST00000407417.3,ENST00000485903.2,ENST00000479364.1,ENST00000371185.2,ENST00000371189.4,ENST00000371187.3,ENST00000371191.1,ENST00000403491.3	chr1	61798183:61798258:61818121:61818239:61824818:61824946,	61818122	61818239	61818150	61818150	Frame_Shift_Del	T	-	p.N288fs
STAD	TCGA-BR-8591-01	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110201	120110201	Frame_Shift_Del	G	-	p.T85fs
STAD	TCGA-BR-8591-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408081	179408081	Frame_Shift_Del	T	-	p.I116fs
STAD	TCGA-BR-8591-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12122471	12122472	Frame_Shift_Ins	-	C	p.T815fs
STAD	TCGA-BR-8591-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926122	50926122	Frame_Shift_Del	C	-	p.T56fs
STAD	TCGA-BR-8591-01	SNX29	ENST00000562510.1,ENST00000306030.3,ENST00000564791.1,ENST00000566228.1,ENST00000323433.4	chr16	12450109:12450136:12492302:12492358:12497304:12497386,	12492303	12492358	12492337	12492338	Frame_Shift_Del	AG	-	p.645_645del
STAD	TCGA-BR-8591-01	CEP250	ENST00000397527.1	chr20	34067800:34067970:34078462:34078630:34079037:34079172,	34078463	34078630	34078523	34078524	Frame_Shift_Ins	-	A	p.E883fs
STAD	TCGA-BR-8591-01	RNF212	ENST00000508428.1	chr4	1073430:1073476:1075354:1075407:1079683:1079742,	1075355	1075407	1075367	1075368	Frame_Shift_Del	TT	-	p.135_135del
STAD	TCGA-BR-8591-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000336057.5,ENST00000225983.6	chr17	42158130:42158250:42159952:42160040:42160132:42160188,	42159953	42160040	42160038	42160038	Frame_Shift_Del	C	-	p.G842fs
STAD	TCGA-BR-8591-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729453	19729453	Frame_Shift_Del	T	-	p.S279fs
STAD	TCGA-BR-8591-01	GOLGA4	ENST00000450863.2	chr3	37292885:37292975:37323448:37323763:37330725:37330782,37292885:37292975:37323448:37323763:37327504:37327552,37315026:37315092:37323448:37323763:37327504:37327552,37315026:37315092:37323448:37323763:37330725:37330782,	37323449	37323763	37323751	37323751	Frame_Shift_Del	A	-	p.G177fs
STAD	TCGA-BR-8591-01	NNT	ENST00000512996.2,ENST00000344920.4,ENST00000264663.5	chr5	43615949:43616167:43619133:43619221:43624133:43624222,	43619134	43619221	43619173	43619173	Frame_Shift_Del	T	-	p.R213fs
STAD	TCGA-BR-8591-01	ZNF483	ENST00000358151.4,ENST00000309235.5,ENST00000355824.3	chr9	114289547:114290087:114293154:114293243:114296018:114296145,	114293155	114293243	114293219	114293222	Frame_Shift_Del	TGTT	-	p.159_160del
STAD	TCGA-BR-8591-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509009	27509009	Frame_Shift_Del	T	-	p.S767fs
STAD	TCGA-BR-8591-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717719	89717720	Frame_Shift_Del	TG	-	p.248_248del
STAD	TCGA-BR-8591-01	CRYBG3	ENST00000389622.2,ENST00000182096.4,ENST00000485253.1	chr3	97659991:97660150:97661127:97661287:97662069:97662414,	97661128	97661287	97661233	97661233	Frame_Shift_Del	A	-	p.N2923fs
STAD	TCGA-BR-8591-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065718	145065718	Frame_Shift_Del	C	-	p.F109fs
STAD	TCGA-BR-8591-01	CDH6	ENST00000265071.2	chr5	31317481:31317599:31317779:31318031:31322924:31329253,	31317780	31318031	31317806	31317806	Frame_Shift_Del	A	-	p.R552fs
STAD	TCGA-BR-8591-01	TEX2	ENST00000258991.3	chr17	62254684:62254831:62265527:62265796:62270918:62271249,	62265528	62265796	62265577	62265578	Frame_Shift_Ins	-	G	p.Q799fs
STAD	TCGA-BR-8591-01	TEX2	ENST00000583501.1,ENST00000583097.1,ENST00000584379.1	chr17	62254684:62254831:62265527:62265775:62270918:62271249,	62265528	62265775	62265577	62265578	Frame_Shift_Ins	-	G	p.Q799fs
STAD	TCGA-BR-8591-01	SCUBE2	ENST00000309263.3,ENST00000519535.1,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9051430:9051592:9052304:9052442,9049035:9049108:9051430:9051592:9052304:9052472,	9051431	9051592	9051501	9051502	Frame_Shift_Ins	-	T	p.N754fs
STAD	TCGA-BR-8591-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551297	Frame_Shift_Del	AA	-	p.907_907del
STAD	TCGA-BR-8591-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551297	Frame_Shift_Del	AA	-	p.907_907del
STAD	TCGA-BR-8591-01	DNAJA1	ENST00000330899.4	chr9	33026479:33026614:33026810:33026988:33029882:33029987,	33026811	33026988	33026949	33026949	Frame_Shift_Del	T	-	p.M90fs
STAD	TCGA-BR-8591-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797397	75797397	Frame_Shift_Del	G	-	p.P3026fs
STAD	TCGA-BR-8591-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050025	44050026	Frame_Shift_Ins	-	C	p.A346fs
STAD	TCGA-BR-8591-01	WDR11	ENST00000263461.6,ENST00000604509.1,ENST00000605543.1	chr10	122664830:122664928:122665387:122665533:122666287:122666367,	122665388	122665533	122665505	122665505	Frame_Shift_Del	T	-	p.C1136fs
STAD	TCGA-BR-8591-01	RCOR3	ENST00000419091.2,ENST00000452621.2,ENST00000367006.4,ENST00000528926.1,ENST00000367005.4	chr1	211451458:211451583:211452579:211452658:211462519:211462738,	211452580	211452658	211452638	211452638	Frame_Shift_Del	A	-	p.P233fs
STAD	TCGA-BR-8591-01	ITGA7	ENST00000394230.2,ENST00000257880.7,ENST00000553804.1,ENST00000555728.1,ENST00000347027.6,ENST00000257879.6,ENST00000394229.2,ENST00000452168.2	chr12	56091721:56091810:56092166:56092360:56092493:56092677,	56092167	56092360	56092301	56092301	Frame_Shift_Del	C	-	p.G357fs
STAD	TCGA-BR-8591-01	TRIT1	ENST00000495175.2,ENST00000441669.2,ENST00000316891.5,ENST00000492612.2,ENST00000545233.1	chr1	40310202:40310312:40312891:40312969:40348989:40349152,40310202:40310312:40312891:40312969:40313219:40313328,	40312892	40312969	40312897	40312897	Frame_Shift_Del	A	-	p.L334fs
STAD	TCGA-BR-8591-01	PALB2	ENST00000261584.4,ENST00000568219.1	chr16	23625324:23625412:23632682:23632799:23634289:23634451,	23632683	23632799	23632770	23632770	Frame_Shift_Del	G	-	p.P1009fs
STAD	TCGA-BR-8591-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261079	151261079	Frame_Shift_Del	C	-	p.R730fs
STAD	TCGA-BR-8591-01	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870783	101870784	Frame_Shift_Ins	-	C	p.P1100fs
STAD	TCGA-BR-8591-01	SND1	ENST00000354725.3	chr7	127721411:127721553:127724775:127724899:127725762:127725832,	127724776	127724899	127724828	127724828	Frame_Shift_Del	C	-	p.H721fs
STAD	TCGA-BR-8591-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851664	71851665	Frame_Shift_Ins	-	G	p.K144fs
STAD	TCGA-BR-8591-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919556	57919556	Frame_Shift_Del	C	-	p.T268fs
STAD	TCGA-BR-8591-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554288.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53347961:53348187:53360010:53360145:53385840:53386057,	53360011	53360145	53360082	53360082	Frame_Shift_Del	T	-	p.K152fs
STAD	TCGA-BR-8591-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138713232	138713233	Frame_Shift_Ins	-	G	p.R1092fs
STAD	TCGA-BR-8591-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70805906	70805906	Frame_Shift_Del	A	-	p.E996fs
STAD	TCGA-BR-8591-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36766828:36767053:36768447:36768637:36776340:36776415,	36768448	36768637	36768517	36768518	Frame_Shift_Ins	-	C	p.S801fs
STAD	TCGA-BR-8591-01	FAM214B	ENST00000378566.1	chr9	35107377:35107565:35108124:35108346:35108590:35108734,	35108125	35108346	35108148	35108148	Frame_Shift_Del	C	-	p.A42fs
STAD	TCGA-BR-8591-01	UBE2O	ENST00000319380.7,ENST00000587127.1	chr17	74387836:74387894:74387990:74388194:74391805:74391942,	74387991	74388194	74388088	74388089	Frame_Shift_Ins	-	G	p.H1018fs
STAD	TCGA-BR-8591-01	RAB30	ENST00000534301.1,ENST00000527633.1,ENST00000260056.2,ENST00000526205.1,ENST00000534141.1,ENST00000534103.1,ENST00000532548.1,ENST00000531021.1,ENST00000533486.1	chr11	82698793:82698812:82705080:82705164:82708265:82708366,	82705081	82705164	82705151	82705151	Frame_Shift_Del	G	-	p.P36fs
STAD	TCGA-BR-8591-01	ZNF385D	ENST00000281523.2	chr3	21478568:21478695:21552352:21552515:21606065:21606176,	21552353	21552515	21552445	21552445	Frame_Shift_Del	T	-	p.N116fs
STAD	TCGA-BR-8591-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660980	3660980	Frame_Shift_Del	G	-	p.H227fs
STAD	TCGA-BR-8591-01	EML5	ENST00000380664.5,ENST00000554922.1	chr14	89153559:89153671:89154614:89154817:89160650:89160751,	89154615	89154817	89154769	89154769	Frame_Shift_Del	T	-	p.N863fs
STAD	TCGA-BR-8591-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138601643	138601643	Frame_Shift_Del	G	-	p.P910fs
STAD	TCGA-BR-8591-01	PSD4	ENST00000245796.6	chr2	113942620:113942650:113942941:113943017:113943453:113943832,	113942942	113943017	113942980	113942980	Frame_Shift_Del	T	-	p.P404fs
STAD	TCGA-BR-8591-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H202fs
STAD	TCGA-BR-8591-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H202fs
STAD	TCGA-BR-8591-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521525	46521525	Frame_Shift_Del	T	-	p.M295fs
STAD	TCGA-BR-8591-01	NR2C1	ENST00000333003.5,ENST00000393101.3,ENST00000545833.1,ENST00000330677.7	chr12	95434251:95434373:95442843:95443009:95445537:95445565,	95442844	95443009	95442883	95442883	Frame_Shift_Del	T	-	p.E365fs
STAD	TCGA-BR-8591-01	COL11A2	ENST00000341947.2,ENST00000457788.1,ENST00000374714.1	chr6	33148887:33148947:33151921:33152101:33153477:33153555,33148887:33148947:33151921:33152101:33154403:33154595,33148887:33148947:33151921:33152101:33152768:33152831,	33151922	33152101	33152074	33152075	Frame_Shift_Ins	-	G	p.T323fs
STAD	TCGA-BR-8591-01	SETDB2	ENST00000317257.8,ENST00000354234.4	chr13	50059765:50059859:50062425:50062766:50064957:50065046,	50062426	50062766	50062719	50062719	Frame_Shift_Del	T	-	p.V635fs
STAD	TCGA-BR-8591-01	LRRC31	ENST00000264676.5	chr3	169578348:169578516:169579457:169579601:169587420:169587621,169574492:169574660:169579457:169579601:169587420:169587621,	169579458	169579601	169579523	169579523	Frame_Shift_Del	T	-	p.M85fs
STAD	TCGA-BR-8591-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3149142:3149199:3151691:3151891:3154944:3155086,	3151692	3151891	3151848	3151849	Frame_Shift_Del	GT	-	p.563_563del
STAD	TCGA-BR-8591-01	ULK2	ENST00000574732.2,ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19741842:19741896:19744801:19744860:19746433:19746451,	19744802	19744860	19744819	19744820	Frame_Shift_Ins	-	T	p.N229fs
STAD	TCGA-BR-8591-01	QDPR	ENST00000514300.1,ENST00000507439.1,ENST00000513615.1	chr4	17488801:17488859:17492284:17492368:17503341:17503482,	17492285	17492368	17492351	17492351	Frame_Shift_Del	G	-	p.P188fs
STAD	TCGA-BR-8591-01	MAP2K7	ENST00000397979.3,ENST00000468058.1,ENST00000545011.1,ENST00000397983.3	chr19	7975983:7976044:7976134:7976215:7976320:7976463,	7976135	7976215	7976149	7976149	Frame_Shift_Del	C	-	p.D290fs
STAD	TCGA-BR-8591-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573659	121573659	Frame_Shift_Del	A	-	p.V109fs
STAD	TCGA-CG-5718-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134659	161134660	Frame_Shift_Ins	-	A	p.I473fs
STAD	TCGA-BR-7958-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000452905.2,ENST00000476245.1,ENST00000393434.2	chr3	125849065:125849136:125850226:125850377:125854377:125854505,	125850227	125850377	125850299	125850312	Frame_Shift_Del	CAGCGTGTAGACGG	-	p.523_528del
STAD	TCGA-D7-6528-01	CAMK1G	ENST00000361322.2,ENST00000009105.1	chr1	209784809:209784897:209785136:209785561:209786129:209786257,	209785137	209785561	209785553	209785554	Frame_Shift_Ins	-	A	p.N444fs
STAD	TCGA-D7-6528-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469775	161469776	Frame_Shift_Ins	-	A	p.R157fs
STAD	TCGA-D7-6528-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469777	161469778	Frame_Shift_Ins	-	A	p.K158fs
STAD	TCGA-BR-4201-01	ALG8	ENST00000299626.5,ENST00000530454.1,ENST00000530910.1,ENST00000525870.1,ENST00000532050.1,ENST00000376156.3,ENST00000527099.1	chr11	77832182:77832220:77835066:77835260:77850539:77850638,77832182:77832220:77835066:77835260:77838403:77838482,	77835067	77835260	77835228	77835229	Frame_Shift_Ins	-	G	p.P69fs
STAD	TCGA-BR-4201-01	RPRD1B	ENST00000373433.4,ENST00000449186.2,ENST00000462548.2	chr20	36687795:36687922:36694482:36694658:36718127:36718241,	36694483	36694658	36694647	36694647	Frame_Shift_Del	A	-	p.E273fs
STAD	TCGA-BR-4201-01	SUCLA2	ENST00000378654.3,ENST00000470760.1	chr13	48563016:48563116:48570977:48571158:48575315:48575376,	48570978	48571158	48570982	48570982	Frame_Shift_Del	T	-	p.L90X
STAD	TCGA-BR-4201-01	DDX50	ENST00000471475.1,ENST00000373585.3,ENST00000483593.1	chr10	70670062:70670138:70670823:70671002:70672917:70672986,	70670824	70671002	70670982	70670982	Frame_Shift_Del	A	-	p.I206fs
STAD	TCGA-BR-4201-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61744345:61744420:61759125:61759259:61762876:61762938,	61759126	61759259	61759155	61759155	Frame_Shift_Del	C	-	p.P208fs
STAD	TCGA-BR-4201-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42002888:42003547:42005348:42005694:42019377:42019604,	42005349	42005694	42005394	42005395	Frame_Shift_Ins	-	C	p.A1044fs
STAD	TCGA-BR-4201-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16328093	16328093	Frame_Shift_Del	G	-	p.P150fs
STAD	TCGA-BR-4201-01	WSCD2	ENST00000547525.1,ENST00000332082.4	chr12	108626507:108626672:108634120:108634321:108641767:108643896,	108634121	108634321	108634217	108634217	Frame_Shift_Del	C	-	p.A414fs
STAD	TCGA-BR-4201-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561666	210561667	Frame_Shift_Ins	-	A	p.A1471fs
STAD	TCGA-BR-4201-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
STAD	TCGA-BR-4201-01	HIPK3	ENST00000525975.1,ENST00000303296.4,ENST00000456517.1,ENST00000379016.3	chr11	33350145:33350179:33358620:33358740:33360302:33360388,	33358621	33358740	33358692	33358693	Frame_Shift_Ins	-	T	p.R431fs
STAD	TCGA-BR-4201-01	MAPKAP1	ENST00000420643.1,ENST00000473837.1,ENST00000497932.1,ENST00000373511.2,ENST00000373503.3,ENST00000394060.3,ENST00000427078.1,ENST00000394063.1,ENST00000265960.3,ENST00000373498.1,ENST00000350766.3	chr9	128305337:128305447:128321911:128322088:128347833:128347906,	128321912	128322088	128322020	128322020	Frame_Shift_Del	G	-	p.P247fs
STAD	TCGA-BR-4201-01	PHF12	ENST00000332830.4,ENST00000589176.1	chr17	27233122:27233535:27233873:27234012:27234607:27234690,	27233874	27234012	27233908	27233909	Frame_Shift_Ins	-	G	p.P882fs
STAD	TCGA-BR-4201-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948389	169948389	Frame_Shift_Del	A	-	p.E221fs
STAD	TCGA-BR-4201-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76696864:76697020:76726418:76726651:76763552:76763676,	76726419	76726651	76726491	76726492	Frame_Shift_Ins	-	T	p.I1080fs
STAD	TCGA-BR-4201-01	IFIH1	ENST00000263642.2	chr2	163133924:163134203:163134714:163134838:163136505:163136622,	163134715	163134838	163134715	163134716	Frame_Shift_Ins	-	T	p.A589fs
STAD	TCGA-BR-4201-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-BR-4201-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-BR-4201-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-BR-4201-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-BR-4201-01	ACAD10	ENST00000546647.1,ENST00000508303.1,ENST00000455480.2,ENST00000413681.3,ENST00000313698.4,ENST00000504803.1,ENST00000392636.2	chr12	112182446:112182847:112183947:112184088:112184852:112184990,	112183948	112184088	112184008	112184008	Frame_Shift_Del	A	-	p.E756fs
STAD	TCGA-BR-4201-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27558802:27558895:27559064:27559292:27560110:27560175,	27559065	27559292	27559091	27559092	Frame_Shift_Ins	-	C	p.G443fs
STAD	TCGA-BR-4201-01	GTF3C2	ENST00000470115.1	chr2	27558494:27558573:27558783:27559292:27560110:27560175,	27558784	27559292	27559091	27559092	Frame_Shift_Ins	-	C	p.G443fs
STAD	TCGA-BR-4201-01	SARS	ENST00000369923.4,ENST00000477544.1	chr1	109756603:109756750:109766599:109766670:109770973:109771054,	109766600	109766670	109766656	109766657	Frame_Shift_Del	GG	-	p.64_65del
STAD	TCGA-BR-4201-01	KCNC4	ENST00000438661.2,ENST00000413138.3,ENST00000469655.1,ENST00000369787.3	chr1	110754769:110754799:110765585:110766522:110768596:110768800,	110765586	110766522	110766448	110766448	Frame_Shift_Del	C	-	p.S514fs
STAD	TCGA-BR-4201-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760502	93760502	Frame_Shift_Del	A	-	p.R289fs
STAD	TCGA-BR-4201-01	IL20RB	ENST00000329582.4,ENST00000475972.1,ENST00000491483.1	chr3	136708282:136708407:136710779:136710930:136714255:136714348,	136710780	136710930	136710803	136710804	Frame_Shift_Ins	-	G	p.S185fs
STAD	TCGA-BR-4201-01	PIH1D1	ENST00000600875.1,ENST00000596916.1,ENST00000597577.1,ENST00000601807.1,ENST00000262265.5,ENST00000596049.1,ENST00000601053.1	chr19	49950280:49950356:49950594:49950724:49951083:49951165,	49950595	49950724	49950611	49950612	Frame_Shift_Ins	-	G	p.G199fs
STAD	TCGA-BR-4201-01	PIH1D1	ENST00000596651.1,ENST00000593629.1	chr19	49950280:49950356:49950594:49950677:49951083:49951165,	49950595	49950677	49950611	49950612	Frame_Shift_Ins	-	G	p.G199fs
STAD	TCGA-BR-4201-01	PIH1D1	ENST00000598889.1,ENST00000598175.1	chr19	49950280:49950356:49950594:49950674:49951083:49951165,	49950595	49950674	49950611	49950612	Frame_Shift_Ins	-	G	p.G199fs
STAD	TCGA-BR-4201-01	METTL6	ENST00000383790.3,ENST00000443029.1,ENST00000450816.2	chr3	15452842:15452944:15455527:15455669:15457004:15457090,15452842:15452944:15455527:15455669:15456236:15456421,15452842:15452944:15455527:15455669:15457278:15457367,	15455528	15455669	15455535	15455535	Frame_Shift_Del	A	-	p.T223fs
STAD	TCGA-BR-4201-01	ADH1A	ENST00000209668.2	chr4	100205555:100205775:100205872:100205960:100208006:100208145,	100205873	100205960	100205876	100205876	Frame_Shift_Del	T	-	p.N115fs
STAD	TCGA-BR-4201-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766932	53766932	Frame_Shift_Del	A	-	p.E875fs
STAD	TCGA-BR-4201-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406040	91406040	Frame_Shift_Del	T	-	p.R291fs
STAD	TCGA-BR-4201-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890938	890939	Frame_Shift_Ins	-	T	p.T163fs
STAD	TCGA-BR-4201-01	ZNF506	ENST00000590766.1,ENST00000586260.1	chr19	19897370:19897663:19916839:19916935:19917750:19917877,19909597:19910259:19916839:19916935:19917750:19917877,19906021:19906469:19916839:19916935:19917750:19917877,19903269:19903293:19916839:19916935:19917750:19917877,	19916840	19916935	19916883	19916883	Frame_Shift_Del	T	-	p.P62fs
STAD	TCGA-BR-4201-01	CUBN	ENST00000377833.4	chr10	16948201:16948408:16949506:16949678:16955809:16955991,	16949507	16949678	16949569	16949569	Frame_Shift_Del	A	-	p.F2548fs
STAD	TCGA-BR-4201-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93263752:93264326:93273080:93273308:93275644:93275864,	93273081	93273308	93273171	93273171	Frame_Shift_Del	C	-	p.T212fs
STAD	TCGA-BR-4201-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000409769.2,ENST00000473565.1,ENST00000409403.2	chr2	201721613:201721708:201722440:201722607:201722695:201722812,	201722441	201722607	201722550	201722550	Frame_Shift_Del	A	-	p.E284fs
STAD	TCGA-BR-4201-01	CLK1	ENST00000461981.1	chr2	201721404:201721534:201721613:201722607:201722695:201722812,	201721614	201722607	201722550	201722550	Frame_Shift_Del	A	-	p.E284fs
STAD	TCGA-BR-4201-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.H780fs
STAD	TCGA-BR-4201-01	HERC1	ENST00000443617.2,ENST00000561400.1	chr15	64004973:64005094:64005551:64005864:64008500:64008672,	64005552	64005864	64005567	64005567	Frame_Shift_Del	C	-	p.G1483fs
STAD	TCGA-BR-4201-01	FANCD2	ENST00000421731.1,ENST00000287647.3,ENST00000383807.1,ENST00000383806.1,ENST00000419585.1	chr3	10116213:10116357:10119764:10119881:10122783:10122912,	10119765	10119881	10119789	10119789	Frame_Shift_Del	C	-	p.G961fs
STAD	TCGA-BR-4201-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338279	19338279	Frame_Shift_Del	C	-	p.A617fs
STAD	TCGA-BR-4201-01	USP34	ENST00000398571.2	chr2	61622317:61622368:61632842:61633263:61647880:61647968,	61632843	61633263	61633020	61633020	Frame_Shift_Del	T	-	p.S126fs
STAD	TCGA-BR-4201-01	WISP1	ENST00000377863.2	chr8	134225106:134225386:134237632:134237826:134239653:134239959,134232823:134233084:134237632:134237826:134239653:134239959,134203379:134203456:134237632:134237826:134239653:134239959,	134237633	134237826	134237718	134237718	Frame_Shift_Del	G	-	p.L232fs
STAD	TCGA-BR-4201-01	DMTF1	ENST00000425406.1	chr7	86815144:86815296:86817354:86817617:86820260:86820343,	86817355	86817617	86817444	86817444	Frame_Shift_Del	A	-	p.Q413fs
STAD	TCGA-BR-4201-01	DMTF1	ENST00000447863.1,ENST00000394703.5,ENST00000412139.2,ENST00000579677.1,ENST00000331242.7,ENST00000414194.2,ENST00000432937.2,ENST00000547146.2	chr7	86815144:86815296:86817407:86817617:86820260:86820343,	86817408	86817617	86817444	86817444	Frame_Shift_Del	A	-	p.Q413fs
STAD	TCGA-BR-4201-01	BRF1	ENST00000546417.1,ENST00000552127.1,ENST00000546474.1,ENST00000551787.1,ENST00000547562.1,ENST00000379932.4,ENST00000327359.3,ENST00000440513.3,ENST00000379937.2,ENST00000392557.4,ENST00000446501.2,ENST00000549655.1	chr14	105692459:105692498:105692587:105692627:105692970:105693097,	105692588	105692627	105692604	105692604	Frame_Shift_Del	T	-	p.L314fs
STAD	TCGA-BR-4201-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068108	88068108	Frame_Shift_Del	A	-	p.K106fs
STAD	TCGA-BR-4201-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000513685.1,ENST00000296585.5	chr5	52368442:52368525:52368947:52369089:52370214:52370307,	52368948	52369089	52369065	52369066	Frame_Shift_Ins	-	T	p.L849fs
STAD	TCGA-BR-4201-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43171591:43171725:43172097:43172277:43172485:43172595,	43172098	43172277	43172148	43172149	Frame_Shift_Ins	-	AG	p.Q1404fs
STAD	TCGA-BR-4201-01	RBM23	ENST00000399922.2,ENST00000346528.5,ENST00000359890.3,ENST00000557667.1,ENST00000542016.2,ENST00000556838.1,ENST00000553884.1,ENST00000555209.1	chr14	23370788:23370942:23371022:23371092:23371188:23371308,	23371023	23371092	23371030	23371030	Frame_Shift_Del	G	-	p.Q437fs
STAD	TCGA-BR-4201-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134568	128134568	Frame_Shift_Del	T	-	p.V407fs
STAD	TCGA-BR-4201-01	GALNT1	ENST00000589189.1,ENST00000269195.5	chr18	33234619:33234765:33243591:33243766:33257554:33257721,	33243592	33243766	33243635	33243635	Frame_Shift_Del	G	-	p.M61fs
STAD	TCGA-BR-4201-01	CCDC62	ENST00000392440.2,ENST00000537566.1,ENST00000253079.6	chr12	123297816:123297966:123307912:123308006:123310968:123311164,	123307913	123308006	123307941	123307941	Frame_Shift_Del	A	-	p.Q677fs
STAD	TCGA-BR-4201-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	711074	711075	Frame_Shift_Ins	-	C	p.C103fs
STAD	TCGA-BR-4201-01	ANAPC1	ENST00000427997.1,ENST00000341068.3	chr2	112582542:112582613:112582707:112582744:112583353:112583432,	112582708	112582744	112582738	112582739	Frame_Shift_Ins	-	G	p.Q904fs
STAD	TCGA-BR-4201-01	DEPDC1	ENST00000370966.5	chr1	68955252:68955291:68960112:68960378:68962634:68962765,	68960113	68960378	68960310	68960310	Frame_Shift_Del	T	-	p.Y40fs
STAD	TCGA-BR-4201-01	VMP1	ENST00000539763.1,ENST00000262291.4,ENST00000592619.1,ENST00000591877.1,ENST00000537567.1,ENST00000536180.1,ENST00000545362.1	chr17	57886156:57886237:57889030:57889147:57895072:57895134,	57889031	57889147	57889086	57889087	Frame_Shift_Ins	-	T	p.P284fs
STAD	TCGA-BR-4201-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000497634.2	chr9	14784367:14784632:14788916:14789112:14792740:14792799,	14788917	14789112	14789027	14789028	Frame_Shift_Del	GT	-	p.1356_1356del
STAD	TCGA-BR-4201-01	FREM1	ENST00000466679.1	chr9	14784367:14784632:14788916:14789064:14792740:14792799,	14788917	14789064	14789027	14789028	Frame_Shift_Del	GT	-	p.1356_1356del
STAD	TCGA-BR-4201-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000478503.2,ENST00000514152.1	chr4	152065371:152065440:152069073:152069338:152070651:152070713,152065061:152065202:152069073:152069338:152070651:152070713,	152069074	152069338	152069114	152069114	Frame_Shift_Del	G	-	p.P401fs
STAD	TCGA-BR-4201-01	NFKB2	ENST00000189444.6,ENST00000428099.1,ENST00000336486.5,ENST00000467116.1,ENST00000369966.3	chr10	104157968:104158054:104158141:104158280:104158495:104158621,	104158142	104158280	104158163	104158163	Frame_Shift_Del	C	-	p.T291fs
STAD	TCGA-BR-4201-01	SMARCB1	ENST00000407082.3,ENST00000263121.7	chr22	24129197:24129449:24133942:24134081:24135745:24135875,	24133943	24134081	24134057	24134057	Frame_Shift_Del	A	-	p.G69fs
STAD	TCGA-BR-4201-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63488463	63488464	Frame_Shift_Ins	-	A	p.V830fs
STAD	TCGA-BR-4201-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63488463	63488464	Frame_Shift_Ins	-	A	p.V830fs
STAD	TCGA-BR-4201-01	NRDE2	ENST00000554464.1,ENST00000553409.1,ENST00000556189.1,ENST00000357904.3,ENST00000354366.3	chr14	90756918:90756951:90759040:90759216:90764603:90764724,	90759041	90759216	90759058	90759059	Frame_Shift_Del	CA	-	p.609_609del
STAD	TCGA-BR-4201-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409X
STAD	TCGA-BR-4201-01	TMEM117	ENST00000550495.1,ENST00000266534.3,ENST00000551577.1,ENST00000550623.1,ENST00000553253.1	chr12	44338012:44338145:44605072:44605170:44693362:44693522,44537327:44537427:44605072:44605170:44693362:44693522,	44605073	44605170	44605117	44605117	Frame_Shift_Del	A	-	p.G185fs
STAD	TCGA-BR-4201-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170051196:170051307:170057468:170057771:170076630:170076726,	170057469	170057771	170057551	170057551	Frame_Shift_Del	G	-	p.P329fs
STAD	TCGA-BR-4201-01	C2CD3	ENST00000313663.7,ENST00000442398.2,ENST00000334126.7,ENST00000414160.2	chr11	73785297:73785645:73789159:73789762:73795925:73796015,	73789160	73789762	73789381	73789381	Frame_Shift_Del	T	-	p.K1461fs
STAD	TCGA-BR-4201-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115381666:115381939:115383287:115383395:115384584:115384689,	115383288	115383395	115383370	115383370	Frame_Shift_Del	T	-	p.N792fs
STAD	TCGA-BR-4201-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323946	235323947	Frame_Shift_Ins	-	T	p.T82fs
STAD	TCGA-BR-4201-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883504	145883505	Frame_Shift_Ins	-	GA	p.R889fs
STAD	TCGA-BR-4201-01	EHBP1	ENST00000431489.1,ENST00000494958.1,ENST00000263991.5,ENST00000413434.1,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3,ENST00000426940.1,ENST00000472809.1,ENST00000405482.1	chr2	62974529:62974587:62991400:62991496:62998473:62998527,	62991401	62991496	62991424	62991424	Frame_Shift_Del	A	-	p.I62fs
STAD	TCGA-BR-4201-01	STARD7	ENST00000462501.1	chr2	96858815:96858943:96859039:96859090:96860695:96860745,	96859040	96859090	96859067	96859067	Frame_Shift_Del	T	-	p.W192fs
STAD	TCGA-BR-4201-01	MSL1	ENST00000579565.1,ENST00000577454.1,ENST00000578648.1	chr17	38279537:38279633:38282435:38282659:38285497:38285513,	38282436	38282659	38282534	38282535	Frame_Shift_Del	AG	-	p.26_26del
STAD	TCGA-BR-4201-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624320	117624320	Frame_Shift_Del	A	-	p.E145fs
STAD	TCGA-BR-4201-01	ZFAND2B	ENST00000448496.1,ENST00000289528.5,ENST00000464902.1,ENST00000422255.1,ENST00000475533.1,ENST00000409336.1,ENST00000409097.1,ENST00000444522.2,ENST00000409217.1	chr2	220072608:220072760:220072977:220073070:220073147:220073208,	220072978	220073070	220073005	220073006	Frame_Shift_Del	TG	-	p.154_154del
STAD	TCGA-BR-4201-01	ZDHHC13	ENST00000399351.3,ENST00000446113.2,ENST00000525490.1	chr11	19174105:19174231:19177342:19177476:19180486:19180587,	19177343	19177476	19177422	19177422	Frame_Shift_Del	T	-	p.L318fs
STAD	TCGA-BR-4201-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33589160:33589468:33608260:33608331:33623542:33623664,	33608261	33608331	33608311	33608312	Frame_Shift_Ins	-	C	p.N47fs
STAD	TCGA-BR-4201-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14105166	14105166	Frame_Shift_Del	G	-	p.E292fs
STAD	TCGA-D7-A4YT-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926074	1926075	Frame_Shift_Ins	-	T	p.K489fs
STAD	TCGA-D7-A4YT-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926074	1926075	Frame_Shift_Ins	-	T	p.K489fs
STAD	TCGA-D7-A4YT-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26960566:26960769:26960912:26961104:26961534:26961688,	26960913	26961104	26960977	26960983	Frame_Shift_Del	AAGCCCC	-	p.1065_1067del
STAD	TCGA-D7-A4YT-01	RCN1	ENST00000533898.1,ENST00000532942.1,ENST00000054950.3	chr11	32122093:32122154:32124826:32125026:32125910:32126148,	32124827	32125026	32124954	32124972	Frame_Shift_Del	GATCCTCCCTCAAGATTAT	-	p.272_278del
STAD	TCGA-D7-A4YT-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384018	12384024	Frame_Shift_Del	GAACCAG	-	p.397_399del
STAD	TCGA-D7-A4YT-01	RNF43	ENST00000583753.1,ENST00000577716.1,ENST00000500597.2,ENST00000584437.1,ENST00000581868.1,ENST00000577625.1,ENST00000407977.2	chr17	56439904:56440009:56440635:56440767:56440886:56440953,	56440636	56440767	56440698	56440720	Frame_Shift_Del	CCATCAGCTTCTCAGCGTCATTA	-	p.167_174del
STAD	TCGA-D7-A4YT-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000452931.1,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000460826.1,ENST00000310931.4	chr2	242186166:242186298:242186470:242186557:242187417:242187458,	242186471	242186557	242186471	242186472	Frame_Shift_Ins	-	T	p.K606fs
STAD	TCGA-D7-8575-01	ZSWIM5	ENST00000359600.5	chr1	45486296:45486460:45499983:45500141:45501359:45501495,	45499984	45500141	45500007	45500008	Frame_Shift_Ins	-	A	p.S809fs
STAD	TCGA-CG-4305-01	POLE2	ENST00000554396.1,ENST00000539565.2,ENST00000556584.1,ENST00000216367.5	chr14	50120872:50120932:50121501:50121556:50121722:50121782,	50121502	50121556	50121545	50121545	Frame_Shift_Del	T	-	p.T344fs
STAD	TCGA-CG-4305-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708387	156708387	Frame_Shift_Del	G	-	p.P37fs
STAD	TCGA-CG-4305-01	MYRIP	ENST00000475082.1,ENST00000458292.1,ENST00000302541.6,ENST00000425621.1,ENST00000444716.1	chr3	39942277:39942417:40085540:40085762:40192538:40192675,	40085541	40085762	40085641	40085641	Frame_Shift_Del	T	-	p.P70fs
STAD	TCGA-CG-4305-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.R587fs
STAD	TCGA-CG-4305-01	POLB	ENST00000519771.1,ENST00000538005.1,ENST00000524208.1,ENST00000265421.4,ENST00000519524.1,ENST00000518579.1,ENST00000518925.1,ENST00000521290.1,ENST00000520008.1	chr8	42214715:42214741:42214837:42214910:42218812:42218879,	42214838	42214910	42214859	42214859	Frame_Shift_Del	A	-	p.V166fs
STAD	TCGA-CG-4305-01	MBOAT1	ENST00000536798.1,ENST00000541730.1,ENST00000324607.7	chr6	20144450:20144546:20151415:20151493:20152854:20153000,	20151416	20151493	20151475	20151475	Frame_Shift_Del	A	-	p.V89fs
STAD	TCGA-CG-4305-01	FCRL3	ENST00000477837.1,ENST00000473231.1,ENST00000368184.3,ENST00000480682.1,ENST00000492769.1,ENST00000494724.1,ENST00000485028.1,ENST00000368186.5	chr1	157659587:157659707:157660044:157660323:157665118:157665199,	157660045	157660323	157660081	157660081	Frame_Shift_Del	C	-	p.A552fs
STAD	TCGA-CG-4305-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322259	27322259	Frame_Shift_Del	T	-	p.Q1235fs
STAD	TCGA-CG-4305-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819645	53819645	Frame_Shift_Del	G	-	p.R265fs
STAD	TCGA-CG-4305-01	PHLDB1	ENST00000356063.5,ENST00000527259.1,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118486755:118486926:118495649:118495775:118498020:118498112,	118495650	118495775	118495754	118495754	Frame_Shift_Del	C	-	p.G153fs
STAD	TCGA-CG-4305-01	PPP1R17	ENST00000342032.3	chr7	31732019:31732137:31735082:31735235:31736578:31736731,	31735083	31735235	31735141	31735141	Frame_Shift_Del	A	-	p.G47fs
STAD	TCGA-CG-4305-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
STAD	TCGA-CG-4305-01	WDR59	ENST00000536050.1,ENST00000262144.6	chr16	74972148:74972164:74976635:74976724:74982416:74982454,	74976636	74976724	74976691	74976691	Frame_Shift_Del	T	-	p.N160fs
STAD	TCGA-CG-4305-01	TMEM165	ENST00000381334.5	chr4	56269409:56269505:56277780:56278006:56283238:56283412,56262417:56262563:56277780:56278006:56283238:56283412,	56277781	56278006	56277913	56277913	Frame_Shift_Del	T	-	p.T113fs
STAD	TCGA-CG-4305-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836079	35836080	Frame_Shift_Ins	-	A	p.C344fs
STAD	TCGA-CG-4305-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-CG-4305-01	ASPSCR1	ENST00000344865.6,ENST00000582355.2,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000306739.4	chr17	79953867:79953941:79954295:79954722:79966912:79966915,	79954296	79954722	79954544	79954544	Frame_Shift_Del	T	-	p.L252fs
STAD	TCGA-CG-4305-01	RASAL1	ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000551051.1	chr12	113538432:113538485:113539693:113539814:113541750:113541886,	113539694	113539814	113539773	113539773	Frame_Shift_Del	C	-	p.D717fs
STAD	TCGA-CG-4305-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P235fs
STAD	TCGA-CG-4305-01	DEPDC5	ENST00000266091.3,ENST00000535622.1,ENST00000382111.2,ENST00000479261.1,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32270263:32270391:32272142:32272251:32275510:32275682,	32272143	32272251	32272206	32272206	Frame_Shift_Del	G	-	p.Y1253X
STAD	TCGA-CG-4305-01	TCF7L2	ENST00000346198.4,ENST00000355717.4	chr10	114799783:114799885:114849158:114849299:114900942:114901075,	114849159	114849299	114849206	114849206	Frame_Shift_Del	C	-	p.Y177fs
STAD	TCGA-CG-4305-01	TCF7L2	ENST00000369395.1	chr10	114799783:114799885:114849155:114849299:114900942:114901075,	114849156	114849299	114849206	114849206	Frame_Shift_Del	C	-	p.Y177fs
STAD	TCGA-CG-4305-01	CHTOP	ENST00000403433.1	chr1	153606555:153606819:153609047:153609129:153610770:153610924,	153609048	153609129	153609097	153609097	Frame_Shift_Del	A	-	p.L11fs
STAD	TCGA-CG-4305-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948389	169948389	Frame_Shift_Del	A	-	p.E221fs
STAD	TCGA-CG-4305-01	CPPED1	ENST00000381774.4	chr16	12758635:12758972:12798480:12798906:12875041:12875260,	12798481	12798906	12798726	12798726	Frame_Shift_Del	C	-	p.G157fs
STAD	TCGA-CG-4305-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.Q319fs
STAD	TCGA-CG-4305-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000336057.5,ENST00000225983.6	chr17	42157474:42157593:42157768:42157866:42158130:42158250,	42157769	42157866	42157801	42157801	Frame_Shift_Del	G	-	p.I933fs
STAD	TCGA-CG-4305-01	ZFAND6	ENST00000559775.1,ENST00000559157.1,ENST00000261749.6,ENST00000558087.1,ENST00000561060.1,ENST00000558494.1,ENST00000559835.1	chr15	80415041:80415142:80423521:80423635:80429821:80429902,	80423522	80423635	80423587	80423588	Frame_Shift_Ins	-	A	p.Q144fs
STAD	TCGA-CG-4305-01	PDE1C	ENST00000396193.1	chr7	31920461:31920473:32209396:32209568:32249100:32249151,	32209397	32209568	32209465	32209466	Frame_Shift_Ins	-	G	p.P80fs
STAD	TCGA-CG-4305-01	LRIG1	ENST00000273261.3,ENST00000496559.2,ENST00000495037.1	chr3	66433405:66433825:66434414:66434696:66436404:66436725,	66434415	66434696	66434513	66434513	Frame_Shift_Del	A	-	p.F658fs
STAD	TCGA-CG-4305-01	PLEKHM1	ENST00000446609.2,ENST00000581448.1,ENST00000430334.3,ENST00000579197.1,ENST00000421073.2	chr17	43517528:43517592:43522835:43523029:43527983:43528129,	43522836	43523029	43522885	43522885	Frame_Shift_Del	C	-	p.D930fs
STAD	TCGA-CG-4305-01	ATP8B4	ENST00000559726.1,ENST00000561104.1,ENST00000284509.6,ENST00000559829.1,ENST00000558906.1	chr15	50190342:50190448:50193288:50193436:50209130:50209236,	50193289	50193436	50193368	50193368	Frame_Shift_Del	T	-	p.K737fs
STAD	TCGA-CG-4305-01	MCM6	ENST00000264156.2	chr2	136623701:136623847:136624132:136624298:136626180:136626430,	136624133	136624298	136624231	136624231	Frame_Shift_Del	A	-	p.L228fs
STAD	TCGA-CG-4305-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95850721:95850846:95853718:95853819:95854574:95854716,	95853719	95853819	95853731	95853732	Frame_Shift_Ins	-	T	p.I344fs
STAD	TCGA-CG-4305-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755543:74755616:74755877:74756062:74756258:74756409,	74755878	74756062	74755993	74755993	Frame_Shift_Del	C	-	p.E137fs
STAD	TCGA-CG-4305-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74755993	74755993	Frame_Shift_Del	C	-	p.E137fs
STAD	TCGA-CG-4305-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735432	95735432	Frame_Shift_Del	A	-	p.L883fs
STAD	TCGA-CG-4305-01	MED23	ENST00000354577.4,ENST00000368068.3,ENST00000540546.1,ENST00000368053.4,ENST00000539158.1,ENST00000403834.3,ENST00000368060.3,ENST00000368058.1	chr6	131927618:131927764:131929067:131929211:131931185:131931227,	131929068	131929211	131929128	131929129	Frame_Shift_Ins	-	T	p.N393fs
STAD	TCGA-CG-4305-01	PHACTR1	ENST00000457702.2,ENST00000415087.1,ENST00000332995.7,ENST00000379350.1	chr6	13206046:13206368:13228047:13228295:13230268:13230425,	13228048	13228295	13228109	13228109	Frame_Shift_Del	G	-	p.D349fs
STAD	TCGA-CG-4305-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218255	134218255	Frame_Shift_Del	C	-	p.S84fs
STAD	TCGA-CG-4305-01	NAV3	ENST00000266692.7,ENST00000549464.1,ENST00000536525.2,ENST00000228327.6,ENST00000397909.2	chr12	78362298:78362482:78388582:78388651:78392116:78392256,	78388583	78388651	78388636	78388636	Frame_Shift_Del	A	-	p.Q242fs
STAD	TCGA-CG-4305-01	FDPS	ENST00000447866.1,ENST00000468479.1,ENST00000491013.1,ENST00000467076.1,ENST00000492887.1,ENST00000477057.1,ENST00000356657.6,ENST00000368356.4,ENST00000492244.1	chr1	155287978:155288082:155288455:155288544:155288646:155288696,	155288456	155288544	155288502	155288502	Frame_Shift_Del	C	-	p.A244fs
STAD	TCGA-CG-4305-01	STK40	ENST00000473733.1,ENST00000359297.2,ENST00000460417.1,ENST00000373132.3,ENST00000373129.3,ENST00000482458.1,ENST00000373130.3	chr1	36820889:36821034:36823839:36823983:36824337:36824423,	36823840	36823983	36823958	36823959	Frame_Shift_Ins	-	C	p.D75fs
STAD	TCGA-CG-4305-01	LHCGR	ENST00000602369.1	chr2	48921379:48921443:48925753:48925914:48936086:48936161,	48925754	48925914	48925846	48925846	Frame_Shift_Del	T	-	p.L259fs
STAD	TCGA-CG-4305-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925846	48925846	Frame_Shift_Del	T	-	p.L259fs
STAD	TCGA-CG-4305-01	SKIL	ENST00000259119.4,ENST00000426052.2,ENST00000458537.3	chr3	170099063:170099129:170102320:170102553:170108010:170108252,	170102321	170102553	170102466	170102467	Frame_Shift_Ins	-	A	p.Q448fs
STAD	TCGA-CG-4305-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564774	107564774	Frame_Shift_Del	T	-	p.T1709fs
STAD	TCGA-CG-4305-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069581	29069581	Frame_Shift_Del	C	-	p.P266fs
STAD	TCGA-CG-4305-01	CDAN1	ENST00000356231.3	chr15	43023408:43023529:43023817:43024023:43024530:43024606,	43023818	43024023	43023871	43023871	Frame_Shift_Del	G	-	p.T563fs
STAD	TCGA-CG-4305-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645975	215645975	Frame_Shift_Del	T	-	p.K208fs
STAD	TCGA-CG-4305-01	SUPT5H	ENST00000402194.2,ENST00000432763.2,ENST00000359191.6,ENST00000599335.1,ENST00000599117.1,ENST00000598725.1	chr19	39960758:39960914:39961016:39961163:39961996:39962143,	39961017	39961163	39961163	39961164	Frame_Shift_Ins	-	GT	p.Q559fs
STAD	TCGA-CG-4305-01	LIG3	ENST00000586435.1,ENST00000588109.1,ENST00000378526.4,ENST00000585740.1,ENST00000585941.1,ENST00000262327.5	chr17	33313112:33313150:33316484:33316682:33317981:33318084,	33316485	33316682	33316509	33316509	Frame_Shift_Del	C	-	p.A239fs
STAD	TCGA-CG-4305-01	APMAP	ENST00000217456.2	chr20	24945010:24945034:24949527:24949720:24950161:24950296,24944529:24944658:24949527:24949720:24950161:24950296,	24949528	24949720	24949624	24949624	Frame_Shift_Del	C	-	p.Y316fs
STAD	TCGA-CG-4305-01	USPL1	ENST00000255304.4	chr13	31204971:31205611:31211880:31211994:31216764:31216894,	31211881	31211994	31211891	31211892	Frame_Shift_Ins	-	A	p.C293fs
STAD	TCGA-CG-4305-01	MCOLN1	ENST00000264079.6	chr19	7591646:7591812:7592405:7592514:7592749:7592780,	7592406	7592514	7592423	7592423	Frame_Shift_Del	C	-	p.D196fs
STAD	TCGA-CG-4305-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37114280:37114373:37116514:37116607,37107714:37107816:37114280:37114373:37116514:37116607,	37114281	37114373	37114285	37114286	Frame_Shift_Ins	-	T	p.I487fs
STAD	TCGA-CG-4305-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.H780fs
STAD	TCGA-CG-4305-01	SCAMP2	ENST00000562363.1	chr15	75144409:75144527:75146361:75146460:75165539:75165643,	75146362	75146460	75146364	75146364	Frame_Shift_Del	G	-	p.Q75fs
STAD	TCGA-CG-4305-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410381	19410381	Frame_Shift_Del	A	-	p.S149X
STAD	TCGA-CG-4305-01	ZC2HC1C	ENST00000439583.2	chr14	75536376:75536452:75537257:75538099:75544234:75544522,	75537258	75538099	75537375	75537376	Frame_Shift_Del	CT	-	p.33_33del
STAD	TCGA-CG-4305-01	ZC2HC1C	ENST00000238686.8	chr14	75536376:75536452:75537257:75538441:75544234:75544522,	75537258	75538441	75537375	75537376	Frame_Shift_Del	CT	-	p.33_33del
STAD	TCGA-CG-4305-01	ZC2HC1C	ENST00000524913.1	chr14	75536376:75536452:75537257:75538614:75544234:75544522,	75537258	75538614	75537375	75537376	Frame_Shift_Del	CT	-	p.33_33del
STAD	TCGA-CG-4305-01	PLEKHH3	ENST00000412503.1,ENST00000591490.1,ENST00000293349.6,ENST00000591196.1,ENST00000591022.1,ENST00000456950.2	chr17	40825193:40825314:40825416:40825574:40825660:40825852,	40825417	40825574	40825491	40825491	Frame_Shift_Del	C	-	p.V192fs
STAD	TCGA-CG-4305-01	AP3M2	ENST00000518421.1	chr8	42010602:42010623:42012133:42012478:42015458:42015603,42011995:42012054:42012133:42012478:42015458:42015603,	42012134	42012478	42012427	42012427	Frame_Shift_Del	C	-	p.V74fs
STAD	TCGA-CG-4305-01	AP3M2	ENST00000174653.3	chr8	42010463:42010623:42012083:42012478:42015458:42015603,	42012084	42012478	42012427	42012427	Frame_Shift_Del	C	-	p.V74fs
STAD	TCGA-CG-4305-01	NCAPG2	ENST00000541468.1,ENST00000275830.10,ENST00000441982.1	chr7	158439151:158439255:158444984:158445172:158447286:158447386,	158444985	158445172	158445158	158445158	Frame_Shift_Del	A	-	p.Y921fs
STAD	TCGA-CG-4305-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934781	153934781	Frame_Shift_Del	C	-	p.G78fs
STAD	TCGA-CG-4305-01	ZC4H2	ENST00000337990.2,ENST00000374839.3,ENST00000476032.1,ENST00000545618.1,ENST00000488831.1	chrX	64137737:64137776:64138921:64139084:64139960:64140007,	64138922	64139084	64139033	64139033	Frame_Shift_Del	G	-	p.I151fs
STAD	TCGA-CG-4305-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27873977	27873977	Frame_Shift_Del	G	-	p.V1551fs
STAD	TCGA-BR-4255-01	CTSB	ENST00000531089.1,ENST00000533455.1,ENST00000353047.6,ENST00000534510.1,ENST00000530290.1,ENST00000453527.2,ENST00000415599.2,ENST00000530640.2,ENST00000532409.1,ENST00000345125.3,ENST00000434271.1,ENST00000531551.1,ENST00000420692.2	chr8	11704625:11704677:11705187:11705331:11705575:11705661,	11705188	11705331	11705039	11705216	Frame_Shift_Del	CTGGCAAGAGGGCATCACTCCCCCTCCTCTATCCTAGAGTTCCGGGACCCCAAGGCTCCTCAGCCCTGACCTCTTCGCTGCAGCGTGAGGAGGGATGCAGCAGCTCCCCAGCCTCCACGTGCGCCGTGGCCAGGCCCCAGGCCCCTTACCGTAGTGCTTGTCCTGTTTGTAGGTCGGG	-	p.217_226del
STAD	TCGA-BR-4362-01	PHF21A	ENST00000534766.1	chr11	45959769:45959863:45967390:45967649:45970436:45970497,	45967391	45967649	45967494	45967495	Frame_Shift_Ins	-	G	p.Q449fs
STAD	TCGA-BR-4362-01	PHF21A	ENST00000527401.1,ENST00000418153.2,ENST00000257821.4	chr11	45959769:45959863:45967390:45967554:45970436:45970497,	45967391	45967554	45967494	45967495	Frame_Shift_Ins	-	G	p.Q449fs
STAD	TCGA-BR-4362-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153590609:153590700:153590785:153590946:153591028:153591152,	153590786	153590946	153590823	153590824	Frame_Shift_Ins	-	C	p.A843fs
STAD	TCGA-BR-4362-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752619	8752619	Frame_Shift_Del	G	-	p.P73fs
STAD	TCGA-BR-4362-01	VSIG10	ENST00000359236.5	chr12	118509163:118509274:118511503:118511797:118517150:118517411,	118511504	118511797	118511707	118511707	Frame_Shift_Del	G	-	p.P339fs
STAD	TCGA-BR-4362-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448298	Frame_Shift_Del	G	-	p.R117fs
STAD	TCGA-BR-4362-01	RPS6KC1	ENST00000490299.1	chr1	213251037:213251158:213277795:213277911:213290658:213290752,213251037:213251158:213277795:213277911:213302869:213303232,	213277796	213277911	213277903	213277903	Frame_Shift_Del	T	-	p.D123fs
STAD	TCGA-BR-4362-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944739:139944990:139945353:139945581:139945662:139945822,	139945354	139945581	139945517	139945517	Frame_Shift_Del	C	-	p.G204fs
STAD	TCGA-BR-4362-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792195:28792360:28792892:28793279:28800065:28800663,	28792893	28793279	28793193	28793193	Frame_Shift_Del	C	-	p.T256fs
STAD	TCGA-BR-4362-01	MYRF	ENST00000278836.5,ENST00000265460.5	chr11	61533096:61533184:61533429:61533693:61536731:61536786,	61533430	61533693	61533640	61533640	Frame_Shift_Del	G	-	p.P115fs
STAD	TCGA-BR-4362-01	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21935342:21935429:21936067:21936139:21936612:21936717,	21936068	21936139	21936094	21936094	Frame_Shift_Del	G	-	p.L413fs
STAD	TCGA-BR-4362-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
STAD	TCGA-BR-4362-01	MGAT5	ENST00000409645.1	chr2	134877752:134877862:135011832:135012215:135027956:135028121,	135011833	135012215	135012020	135012020	Frame_Shift_Del	T	-	p.G15fs
STAD	TCGA-BR-4362-01	CAPN10	ENST00000391984.2,ENST00000270361.11,ENST00000494738.1,ENST00000404753.3	chr2	241535869:241535938:241536097:241536359:241537304:241537394,	241536098	241536359	241536203	241536203	Frame_Shift_Del	G	-	p.A529fs
STAD	TCGA-BR-4362-01	WDR91	ENST00000344400.5	chr7	134870533:134871067:134871723:134871921:134874095:134874204,	134871724	134871921	134871807	134871808	Frame_Shift_Ins	-	T	p.V666fs
STAD	TCGA-BR-4362-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.V333fs
STAD	TCGA-BR-4362-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90048567	90048567	Frame_Shift_Del	T	-	p.K119fs
STAD	TCGA-BR-4362-01	MAOA	ENST00000542639.1,ENST00000497485.1,ENST00000338702.3	chrX	43571951:43572043:43587419:43587561:43590487:43590629,	43587420	43587561	43587520	43587520	Frame_Shift_Del	G	-	p.C201fs
STAD	TCGA-BR-4362-01	PTER	ENST00000423462.2	chr10	16479361:16479489:16526335:16526815:16528350:16528616,16478982:16479046:16526335:16526815:16528350:16528616,	16526336	16526815	16526546	16526546	Frame_Shift_Del	A	-	p.M54fs
STAD	TCGA-BR-4362-01	CFI	ENST00000510800.1,ENST00000394634.2,ENST00000394635.3,ENST00000512148.1	chr4	110685692:110685846:110687709:110687980:110723070:110723134,	110687710	110687980	110687927	110687927	Frame_Shift_Del	T	-	p.Y38fs
STAD	TCGA-BR-4362-01	PSMD1	ENST00000308696.6,ENST00000409643.1,ENST00000373635.4	chr2	231926961:231927035:231927219:231927389:231931619:231931825,	231927220	231927389	231927286	231927287	Frame_Shift_Ins	-	T	p.V67fs
STAD	TCGA-BR-4362-01	PSMD1	ENST00000440838.1	chr2	231926961:231927035:231927219:231927407:231931619:231931825,	231927220	231927407	231927286	231927287	Frame_Shift_Ins	-	T	p.V67fs
STAD	TCGA-BR-4362-01	ECHDC1	ENST00000368292.6,ENST00000368287.1,ENST00000309620.9,ENST00000368291.2,ENST00000479525.2	chr6	127648155:127648289:127651953:127652175:127664105:127664491,127648155:127648289:127651953:127652175:127663500:127663552,127648155:127648289:127651953:127652175:127664480:127664493,	127651954	127652175	127652056	127652056	Frame_Shift_Del	T	-	p.T46fs
STAD	TCGA-BR-4362-01	FLYWCH1	ENST00000573564.1,ENST00000253928.9,ENST00000416288.2	chr16	2983149:2983583:2983716:2983980:2987121:2987271,	2983717	2983980	2983745	2983745	Frame_Shift_Del	G	-	p.L425fs
STAD	TCGA-BR-4362-01	GABPB2	ENST00000368918.3,ENST00000489549.1	chr1	151070327:151070478:151076037:151076151:151079512:151079653,	151076038	151076151	151076042	151076042	Frame_Shift_Del	C	-	p.D209fs
STAD	TCGA-BR-4362-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985528	36985528	Frame_Shift_Del	A	-	p.Q749fs
STAD	TCGA-BR-4362-01	ARPP21	ENST00000187397.4	chr3	35732416:35732497:35748465:35748574:35756930:35756968,35732416:35732497:35748465:35748574:35750460:35750562,	35748466	35748574	35748501	35748501	Frame_Shift_Del	A	-	p.E241fs
STAD	TCGA-BR-4362-01	INTS12	ENST00000451321.2	chr4	106616718:106616825:106621006:106621171:106629794:106629816,	106621007	106621171	106621121	106621122	Frame_Shift_Ins	-	A	p.L14fs
STAD	TCGA-BR-4362-01	PIKFYVE	ENST00000443896.1,ENST00000264380.4	chr2	209168929:209169042:209169569:209169737:209176959:209177019,	209169570	209169737	209169732	209169732	Frame_Shift_Del	A	-	p.Q544fs
STAD	TCGA-BR-4362-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31602248:31602334:31602529:31602754:31602908:31603049,	31602530	31602754	31602641	31602641	Frame_Shift_Del	C	-	p.G1682fs
STAD	TCGA-BR-4362-01	PNPLA5	ENST00000216177.4	chr22	44285678:44285744:44286941:44287174:44287567:44287875,	44286942	44287174	44287049	44287050	Frame_Shift_Ins	-	G	p.D107fs
STAD	TCGA-BR-4362-01	KIF6	ENST00000287152.7,ENST00000538893.1,ENST00000373215.3,ENST00000373216.3,ENST00000458470.1	chr6	39563829:39564036:39580964:39581094:39602624:39602734,	39580965	39581094	39580993	39580993	Frame_Shift_Del	A	-	p.L204fs
STAD	TCGA-BR-4362-01	MIPOL1	ENST00000539062.2,ENST00000556451.1,ENST00000327441.7,ENST00000396294.2,ENST00000545536.1,ENST00000554930.1,ENST00000537471.1	chr14	37739624:37739730:37754522:37754652:37777260:37777294,	37754523	37754652	37754647	37754647	Frame_Shift_Del	A	-	p.L206fs
STAD	TCGA-BR-4362-01	SCARA5	ENST00000524352.1,ENST00000354914.3	chr8	27779087:27779762:27823930:27824059:27845020:27845132,	27823931	27824059	27823980	27823980	Frame_Shift_Del	C	-	p.L65fs
STAD	TCGA-BR-4362-01	DNAJC4	ENST00000321685.3,ENST00000535246.1	chr11	63999981:64000086:64000175:64000337:64001365:64001452,	64000176	64000337	64000186	64000186	Frame_Shift_Del	C	-	p.T125fs
STAD	TCGA-BR-4362-01	DNAJC4	ENST00000321460.5	chr11	63999981:64000086:64000172:64000337:64001365:64001452,	64000173	64000337	64000186	64000186	Frame_Shift_Del	C	-	p.T125fs
STAD	TCGA-BR-4362-01	BAAT	ENST00000395051.3,ENST00000259407.2	chr9	104125204:104125297:104130401:104130604:104133220:104133544,	104130402	104130604	104130597	104130598	Frame_Shift_Ins	-	C	p.G158fs
STAD	TCGA-BR-4362-01	HFM1	ENST00000430465.1	chr1	91781696:91781741:91781947:91782033:91784634:91784766,91781696:91781741:91781947:91782033:91784849:91784947,	91781948	91782033	91781979	91781980	Frame_Shift_Ins	-	T	p.I956fs
STAD	TCGA-BR-4362-01	EPN2	ENST00000572627.2,ENST00000571254.1,ENST00000575595.1	chr17	19215364:19215457:19216438:19216592:19232023:19232075,	19216439	19216592	19216468	19216468	Frame_Shift_Del	C	-	p.L341fs
STAD	TCGA-BR-4362-01	EPN2	ENST00000395626.1,ENST00000580579.1,ENST00000347697.2,ENST00000395620.2,ENST00000395618.3,ENST00000395628.2,ENST00000314728.5	chr17	19215364:19215457:19216417:19216592:19232023:19232075,	19216418	19216592	19216468	19216468	Frame_Shift_Del	C	-	p.L341fs
STAD	TCGA-BR-4362-01	EPN2	ENST00000494192.2	chr17	19215364:19215457:19216435:19216592:19232023:19232075,	19216436	19216592	19216468	19216468	Frame_Shift_Del	C	-	p.L341fs
STAD	TCGA-BR-4362-01	CTNND2	ENST00000359640.2,ENST00000511377.1,ENST00000304623.8	chr5	11364968:11365002:11384776:11385341:11397142:11397315,	11384777	11385341	11384949	11384949	Frame_Shift_Del	G	-	p.T336fs
STAD	TCGA-BR-4362-01	SNRPA1	ENST00000560856.1,ENST00000558036.1,ENST00000558020.1,ENST00000559309.1	chr15	101832166:101832245:101833229:101833377:101835301:101835408,	101833230	101833377	101833280	101833280	Frame_Shift_Del	A	-	p.P61fs
STAD	TCGA-BR-4362-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978038	15978038	Frame_Shift_Del	T	-	p.K18fs
STAD	TCGA-BR-4362-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859371	48859372	Frame_Shift_Ins	-	A	p.P235fs
STAD	TCGA-BR-4362-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158043	Frame_Shift_Del	CC	-	p.1178_1178del
STAD	TCGA-BR-4362-01	CDK14	ENST00000406263.1,ENST00000380050.3,ENST00000436577.2,ENST00000265741.3	chr7	90675211:90675275:90708746:90708795:90741856:90741996,	90708747	90708795	90708770	90708770	Frame_Shift_Del	A	-	p.S358fs
STAD	TCGA-BR-4362-01	SCAMP2	ENST00000268099.9,ENST00000566480.1,ENST00000569251.1,ENST00000563829.1	chr15	75137813:75137934:75140940:75141042:75142854:75143014,	75140941	75141042	75140995	75140996	Frame_Shift_Ins	-	A	p.C227fs
STAD	TCGA-BR-4362-01	LPO	ENST00000543544.1,ENST00000581008.1	chr17	56320338:56320416:56324838:56324999:56326420:56326538,	56324839	56324999	56324946	56324946	Frame_Shift_Del	G	-	p.W91fs
STAD	TCGA-BR-4362-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696716	17696716	Frame_Shift_Del	C	-	p.V151fs
STAD	TCGA-BR-4362-01	CCNE2	ENST00000396133.3,ENST00000308108.4,ENST00000520509.1,ENST00000519889.1	chr8	95902642:95902778:95905045:95905197:95906118:95906172,	95905046	95905197	95905168	95905168	Frame_Shift_Del	C	-	p.I66fs
STAD	TCGA-BR-4362-01	CTNNA1	ENST00000540387.1,ENST00000518825.1,ENST00000355078.5,ENST00000521724.1,ENST00000302763.7	chr5	138240087:138240130:138253430:138253587:138260198:138260235,	138253431	138253587	138253516	138253516	Frame_Shift_Del	A	-	p.E492fs
STAD	TCGA-BR-4362-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670523	151670524	Frame_Shift_Ins	-	A	p.E333fs
STAD	TCGA-BR-4362-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321162	152321163	Frame_Shift_Ins	-	A	p.E1710fs
STAD	TCGA-BR-4362-01	RERE	ENST00000476556.1,ENST00000337907.3,ENST00000377464.1,ENST00000400908.2	chr1	8418255:8418976:8419823:8420046:8420171:8421550,	8419824	8420046	8420009	8420010	Frame_Shift_Del	CA	-	p.1145_1145del
STAD	TCGA-BR-4362-01	HMGN1	ENST00000464078.1,ENST00000380747.1,ENST00000380749.5	chr21	40717071:40717200:40720217:40720265:40720347:40720371,	40720218	40720265	40720231	40720231	Frame_Shift_Del	T	-	p.K38fs
STAD	TCGA-BR-4362-01	CXADR	ENST00000400169.1,ENST00000284878.7	chr21	18931293:18931449:18933019:18933142:18933655:18933794,	18933020	18933142	18933045	18933045	Frame_Shift_Del	A	-	p.V199fs
STAD	TCGA-BR-4362-01	OCIAD2	ENST00000508632.1,ENST00000508069.2	chr4	48887421:48887582:48894788:48894906:48896022:48896070,	48894789	48894906	48894833	48894833	Frame_Shift_Del	A	-	p.E114fs
STAD	TCGA-BR-4362-01	OCIAD2	ENST00000514576.1	chr4	48887421:48887582:48894788:48896070:48899820:48899852,	48894789	48896070	48894833	48894833	Frame_Shift_Del	A	-	p.E114fs
STAD	TCGA-BR-4362-01	TM6SF2	ENST00000389363.4,ENST00000431465.2,ENST00000591001.1	chr19	19375174:19375682:19377298:19377418:19378429:19378522,	19377299	19377418	19377330	19377331	Frame_Shift_Del	CA	-	p.298_298del
STAD	TCGA-BR-4362-01	DCAF5	ENST00000554681.1	chr14	69585910:69585947:69588933:69589077:69619481:69619593,69585910:69585947:69588933:69589077:69619660:69619716,	69588934	69589077	69588976	69588976	Frame_Shift_Del	A	-	p.C106fs
STAD	TCGA-BR-4362-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.Q319fs
STAD	TCGA-BR-4362-01	MPZL1	ENST00000465787.1,ENST00000367853.3,ENST00000359523.2,ENST00000474859.1,ENST00000474729.1	chr1	167734825:167734986:167741511:167741725:167742472:167742605,	167741512	167741725	167741719	167741720	Frame_Shift_Ins	-	A	p.E156fs
STAD	TCGA-BR-4362-01	LGALS12	ENST00000415491.2,ENST00000340246.5,ENST00000394618.3	chr11	63277934:63277973:63278550:63278577:63279223:63279312,	63278551	63278577	63278567	63278568	Frame_Shift_Ins	-	C	p.S206fs
STAD	TCGA-BR-4362-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-BR-4362-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-BR-4362-01	C11orf49	ENST00000527667.1	chr11	47008758:47008861:47073938:47074069:47159195:47159280,46958330:46958402:47073938:47074069:47159195:47159280,47013093:47013198:47073938:47074069:47159195:47159280,	47073939	47074069	47074021	47074021	Frame_Shift_Del	T	-	p.S77fs
STAD	TCGA-BR-4362-01	NSMCE2	ENST00000517315.1,ENST00000522563.1,ENST00000287437.3	chr8	126369460:126369561:126369953:126370060:126379009:126379317,	126369954	126370060	126369982	126369985	Frame_Shift_Del	AAGT	-	p.183_184del
STAD	TCGA-BR-4362-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102450870:102450925:102452361:102452440:102456280:102456394,	102452362	102452440	102452431	102452432	Frame_Shift_Ins	-	A	p.S255fs
STAD	TCGA-BR-4362-01	RGS2	ENST00000235382.5	chr1	192779499:192779561:192780110:192780277:192780531:192781403,	192780111	192780277	192780194	192780194	Frame_Shift_Del	A	-	p.F119fs
STAD	TCGA-BR-4362-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462268	5462268	Frame_Shift_Del	T	-	p.K583fs
STAD	TCGA-BR-4362-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40794907	40794907	Frame_Shift_Del	T	-	p.I278fs
STAD	TCGA-BR-4362-01	SLC30A3	ENST00000233535.4,ENST00000497341.1,ENST00000445870.1,ENST00000447008.2	chr2	27478253:27478328:27479253:27479388:27479655:27479761,	27479254	27479388	27479380	27479380	Frame_Shift_Del	G	-	p.R298fs
STAD	TCGA-BR-4362-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000584897.1,ENST00000581711.1,ENST00000577880.1	chr18	2707804:2707918:2718155:2718233:2718312:2718432,	2718156	2718233	2718224	2718224	Frame_Shift_Del	A	-	p.F776fs
STAD	TCGA-BR-4362-01	BFAR	ENST00000566710.1,ENST00000261658.2,ENST00000426842.2	chr16	14738144:14738466:14748922:14749067:14755748:14755922,14743660:14743830:14748922:14749067:14755748:14755922,	14748923	14749067	14749040	14749041	Frame_Shift_Ins	-	C	p.K252fs
STAD	TCGA-BR-4362-01	CROT	ENST00000488850.1,ENST00000419147.2,ENST00000331536.3,ENST00000442291.1	chr7	86990758:86990887:86991043:86991168:86998691:86998800,	86991044	86991168	86991046	86991046	Frame_Shift_Del	A	-	p.E170fs
STAD	TCGA-BR-4362-01	DGKH	ENST00000337343.4,ENST00000379274.2,ENST00000540693.1,ENST00000538674.1,ENST00000261491.5,ENST00000536612.1	chr13	42772613:42772731:42773701:42773812:42773948:42774045,	42773702	42773812	42773803	42773803	Frame_Shift_Del	A	-	p.E796fs
STAD	TCGA-BR-7707-01	HIPK3	ENST00000303296.4,ENST00000379016.3	chr11	33279132:33279435:33307958:33309057:33350055:33350179,	33307959	33309057	33308323	33308323	Frame_Shift_Del	C	-	p.G121fs
STAD	TCGA-BR-7707-01	PYGM	ENST00000377432.3,ENST00000164139.3,ENST00000462303.1	chr11	64518796:64518938:64519068:64519127:64519395:64519487,	64519069	64519127	64519098	64519099	Frame_Shift_Ins	-	A	p.V600fs
STAD	TCGA-BR-7707-01	FAM149A	ENST00000513030.1,ENST00000514829.1,ENST00000227065.4,ENST00000356371.5,ENST00000503432.1,ENST00000389354.5,ENST00000502970.1,ENST00000515078.1,ENST00000514153.1	chr4	187075621:187075792:187077153:187077344:187078718:187078873,	187077154	187077344	187077174	187077174	Frame_Shift_Del	A	-	p.Q135fs
STAD	TCGA-BR-7707-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-BR-7707-01	CELSR1	ENST00000262738.3	chr22	46774487:46774614:46776684:46776852:46777742:46777947,	46776685	46776852	46776791	46776791	Frame_Shift_Del	C	-	p.A2384fs
STAD	TCGA-BR-7707-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218254	134218255	Frame_Shift_Ins	-	C	p.S84fs
STAD	TCGA-BR-7707-01	CA14	ENST00000607652.1,ENST00000369111.4,ENST00000483993.2	chr1	150233976:150234037:150234556:150234699:150234923:150235019,	150234557	150234699	150234562	150234563	Frame_Shift_Del	CT	-	p.87_88del
STAD	TCGA-BR-7707-01	TRPV4	ENST00000418703.2,ENST00000537083.1,ENST00000538125.1,ENST00000346520.2,ENST00000536838.1,ENST00000261740.2	chr12	110236418:110236717:110238422:110238563:110240795:110240948,	110238423	110238563	110238436	110238437	Frame_Shift_Ins	-	C	p.G280fs
STAD	TCGA-BR-7707-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000569991.1,ENST00000394747.1,ENST00000567385.1,ENST00000394748.1	chr16	48258258:48258340:48261716:48261875:48264347:48264484,	48261717	48261875	48261862	48261862	Frame_Shift_Del	G	-	p.Q84fs
STAD	TCGA-BR-7707-01	TRIM46	ENST00000368382.1,ENST00000545012.1,ENST00000368385.4,ENST00000468878.1,ENST00000392451.2,ENST00000474430.1,ENST00000334634.4,ENST00000543729.1,ENST00000368383.3	chr1	155149670:155149766:155150477:155150731:155150967:155151089,	155150478	155150731	155150501	155150501	Frame_Shift_Del	G	-	p.E311fs
STAD	TCGA-BR-7707-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48883070:48883436:48883900:48884028:48885416:48885624,	48883901	48884028	48883979	48883979	Frame_Shift_Del	A	-	p.P626fs
STAD	TCGA-BR-7707-01	DDX60L	ENST00000505863.1	chr4	169337832:169337948:169341411:169341531:169342910:169343060,	169341412	169341531	169341447	169341448	Frame_Shift_Ins	-	A	p.T827fs
STAD	TCGA-BR-7707-01	COL22A1	ENST00000435777.1,ENST00000303045.6	chr8	139736857:139736911:139737629:139737683:139749766:139749820,	139737630	139737683	139737648	139737649	Frame_Shift_Ins	-	G	p.P725fs
STAD	TCGA-BR-7707-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L356fs
STAD	TCGA-BR-7707-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998128	169998128	Frame_Shift_Del	A	-	p.L273X
STAD	TCGA-BR-7707-01	TSPAN17	ENST00000310032.8,ENST00000405525.2,ENST00000514705.1,ENST00000515708.1,ENST00000508164.1,ENST00000503030.1	chr5	176078616:176078667:176078754:176078901:176079743:176079914,	176078755	176078901	176078866	176078866	Frame_Shift_Del	G	-	p.I83fs
STAD	TCGA-BR-7707-01	UBE3C	ENST00000348165.5,ENST00000389103.4	chr7	156974801:156975022:156976571:156976723:156979527:156979715,	156976572	156976723	156976641	156976642	Frame_Shift_Del	TC	-	p.354_354del
STAD	TCGA-BR-7707-01	TYK2	ENST00000525621.1,ENST00000527481.2,ENST00000264818.6,ENST00000524462.1	chr19	10461727:10461838:10463109:10463227:10463601:10463750,	10463110	10463227	10463113	10463113	Frame_Shift_Del	G	-	p.T1106fs
STAD	TCGA-BR-7707-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17378743	17378743	Frame_Shift_Del	A	-	p.T431fs
STAD	TCGA-BR-7707-01	KDM4B	ENST00000159111.4,ENST00000536461.1,ENST00000589104.1	chr19	5137972:5138081:5143977:5144163:5144258:5144423,	5143978	5144163	5144151	5144151	Frame_Shift_Del	G	-	p.S908fs
STAD	TCGA-BR-7707-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170051196:170051307:170057468:170057771:170076630:170076726,	170057469	170057771	170057551	170057551	Frame_Shift_Del	G	-	p.P329fs
STAD	TCGA-BR-7707-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054755	72054755	Frame_Shift_Del	C	-	p.G55fs
STAD	TCGA-BR-7707-01	CSNK2A2	ENST00000262506.3,ENST00000566813.1	chr16	58201588:58201699:58202513:58202597:58208354:58208414,	58202514	58202597	58202515	58202515	Frame_Shift_Del	T	-	p.K171fs
STAD	TCGA-BR-7707-01	ARHGAP17	ENST00000572314.1,ENST00000441763.2,ENST00000289968.6	chr16	24946790:24946960:24950684:24950918:24953307:24953464,	24950685	24950918	24950745	24950745	Frame_Shift_Del	C	-	p.G555fs
STAD	TCGA-BR-7707-01	TAL1	ENST00000371884.2,ENST00000294339.3	chr1	47689743:47689770:47691114:47691561:47694867:47695023,	47691115	47691561	47691474	47691475	Frame_Shift_Ins	-	G	p.P29fs
STAD	TCGA-BR-7707-01	GEN1	ENST00000317402.7,ENST00000381254.2	chr2	17952342:17952365:17952462:17952554:17953900:17954051,17950004:17950078:17952462:17952554:17953900:17954051,	17952463	17952554	17952518	17952518	Frame_Shift_Del	A	-	p.T255fs
STAD	TCGA-BR-7707-01	CHRNA2	ENST00000523695.1	chr8	27319119:27319271:27320495:27321377:27324745:27324855,	27320496	27321377	27320855	27320855	Frame_Shift_Del	C	-	p.A369fs
STAD	TCGA-BR-7707-01	CHRNA2	ENST00000520933.2,ENST00000407991.1,ENST00000240132.2,ENST00000523529.1	chr8	27319119:27319271:27320495:27321510:27324745:27324855,	27320496	27321510	27320855	27320855	Frame_Shift_Del	C	-	p.A369fs
STAD	TCGA-BR-7707-01	ALG11	ENST00000521508.1	chr13	52586549:52586598:52593048:52593279:52598141:52599073,	52593049	52593279	52593203	52593203	Frame_Shift_Del	T	-	p.A66fs
STAD	TCGA-BR-7707-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075898	101075899	Frame_Shift_Ins	-	A	p.L366fs
STAD	TCGA-BR-7707-01	MDM1	ENST00000303145.7,ENST00000545724.1,ENST00000411698.2,ENST00000430606.2	chr12	68718784:68721290:68724886:68725001:68726007:68726035,68720436:68720801:68724886:68725001:68726007:68726035,	68724887	68725001	68724964	68724964	Frame_Shift_Del	T	-	p.K19fs
STAD	TCGA-BR-7707-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068108	88068108	Frame_Shift_Del	A	-	p.K106fs
STAD	TCGA-BR-7707-01	KIAA1217	ENST00000438429.1	chr10	24544256:24544525:24669797:24669996:24721923:24722122,24508554:24508838:24669797:24669996:24721923:24722122,24528123:24528266:24669797:24669996:24721923:24722122,	24669798	24669996	24669902	24669902	Frame_Shift_Del	G	-	p.E153fs
STAD	TCGA-BR-7707-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15296067:15296219:15296297:15296490:15297688:15297799,	15296298	15296490	15296358	15296358	Frame_Shift_Del	G	-	p.P695fs
STAD	TCGA-BR-7707-01	NADSYN1	ENST00000530055.1,ENST00000525200.1,ENST00000539574.1,ENST00000319023.2,ENST00000529840.1,ENST00000527852.1	chr11	71191800:71191925:71192401:71192450:71193046:71193071,71191800:71191925:71192401:71192450:71192968:71193071,	71192402	71192450	71192428	71192429	Frame_Shift_Ins	-	T	p.D342fs
STAD	TCGA-BR-7707-01	EPHA5	ENST00000511294.1,ENST00000273854.3,ENST00000354839.4	chr4	66286158:66286283:66356094:66356430:66361105:66361261,	66356095	66356430	66356280	66356281	Frame_Shift_Ins	-	CA	p.E406fs
STAD	TCGA-BR-7707-01	IZUMO4	ENST00000395301.3	chr19	2098785:2098803:2098974:2099028:2099253:2099579,	2098975	2099028	2099012	2099013	Frame_Shift_Del	AG	-	p.197_198del
STAD	TCGA-BR-7707-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3,ENST00000411772.1	chr15	43720213:43720366:43724391:43724875:43730521:43730605,	43724392	43724875	43724418	43724418	Frame_Shift_Del	C	-	p.D1217fs
STAD	TCGA-BR-7707-01	MS4A12	ENST00000537076.1,ENST00000526784.1	chr11	60264785:60265067:60269455:60269512:60271173:60271290,	60269456	60269512	60269470	60269471	Frame_Shift_Del	CT	-	p.143_143del
STAD	TCGA-BR-7707-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
STAD	TCGA-BR-7707-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001304	11001305	Frame_Shift_Ins	-	C	p.S652fs
STAD	TCGA-BR-7707-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001304	11001305	Frame_Shift_Ins	-	C	p.S652fs
STAD	TCGA-BR-7707-01	VPS13B	ENST00000355155.1,ENST00000358544.2,ENST00000441350.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100025987:100026163:100050650:100050794:100108539:100108660,	100050651	100050794	100050671	100050671	Frame_Shift_Del	T	-	p.T56fs
STAD	TCGA-BR-7707-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296172	101296173	Frame_Shift_Ins	-	T	p.T218fs
STAD	TCGA-BR-7707-01	TRIM27	ENST00000377199.3,ENST00000481474.1,ENST00000377194.3	chr6	28876584:28876617:28876749:28876865:28879472:28879495,	28876750	28876865	28876796	28876796	Frame_Shift_Del	A	-	p.A281fs
STAD	TCGA-BR-7707-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819644	53819645	Frame_Shift_Ins	-	G	p.R265fs
STAD	TCGA-BR-7707-01	BTBD7	ENST00000554565.1	chr14	93727947:93728023:93730130:93730339:93760203:93760274,93727947:93728023:93730130:93730339:93799165:93799367,	93730131	93730339	93730184	93730184	Frame_Shift_Del	A	-	p.Y440fs
STAD	TCGA-BR-7707-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-BR-7707-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000440844.1	chr8	121357684:121357802:121379409:121379487:121381568:121381724,	121379410	121379487	121379470	121379471	Frame_Shift_Ins	-	C	p.G1713fs
STAD	TCGA-BR-7707-01	NPHP3	ENST00000326682.8,ENST00000337331.5	chr3	132416103:132416206:132418196:132418294:132418761:132418905,	132418197	132418294	132418282	132418283	Frame_Shift_Ins	-	T	p.H634fs
STAD	TCGA-BR-7707-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934727	223934727	Frame_Shift_Del	G	-	p.S196fs
STAD	TCGA-BR-7707-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379233	29379233	Frame_Shift_Del	A	-	p.S393X
STAD	TCGA-BR-7707-01	C7orf26	ENST00000472693.1,ENST00000344417.5	chr7	6634065:6634231:6639459:6639987:6641731:6641771,	6639460	6639987	6639538	6639539	Frame_Shift_Ins	-	T	p.T220fs
STAD	TCGA-BR-7707-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000599857.1,ENST00000595904.1	chr19	50905034:50905181:50905255:50905381:50905461:50905630,	50905256	50905381	50905323	50905324	Frame_Shift_Ins	-	G	p.R177fs
STAD	TCGA-BR-7707-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740528	62740528	Frame_Shift_Del	G	-	p.P83fs
STAD	TCGA-BR-7707-01	FUK	ENST00000464499.1	chr16	70512453:70512553:70512699:70513306:70513481:70513584,	70512700	70513306	70513191	70513191	Frame_Shift_Del	C	-	p.A1013fs
STAD	TCGA-BR-7707-01	FUK	ENST00000378912.2,ENST00000571514.1,ENST00000288078.6,ENST00000498702.1	chr16	70512453:70512553:70513082:70513306:70513481:70513584,	70513083	70513306	70513191	70513191	Frame_Shift_Del	C	-	p.A1013fs
STAD	TCGA-BR-7707-01	LGMN	ENST00000334869.4,ENST00000393218.2,ENST00000557609.1	chr14	93170620:93170706:93170984:93171052:93176016:93176086,93170632:93170706:93170984:93171052:93172827:93172998,	93170985	93171052	93170987	93170987	Frame_Shift_Del	G	-	p.R420fs
STAD	TCGA-BR-7707-01	MAP2K7	ENST00000397979.3,ENST00000397981.3,ENST00000397983.3	chr19	7974639:7974781:7974947:7975014:7975144:7975258,	7974948	7975014	7975006	7975006	Frame_Shift_Del	G	-	p.I108fs
STAD	TCGA-BR-7707-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
STAD	TCGA-BR-7707-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
STAD	TCGA-BR-7707-01	RNF214	ENST00000529869.1	chr11	117103418:117103442:117104982:117105095:117109316:117109362,	117104983	117105095	117105026	117105026	Frame_Shift_Del	C	-	p.A13fs
STAD	TCGA-BR-7707-01	SULT1B1	ENST00000512870.1	chr4	70620387:70620516:70620787:70620919:70626176:70626289,	70620788	70620919	70620845	70620845	Frame_Shift_Del	T	-	p.I31fs
STAD	TCGA-BR-6452-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561667	210561667	Frame_Shift_Del	A	-	p.A1471fs
STAD	TCGA-BR-6452-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243331	141243332	Frame_Shift_Del	AA	-	p.855_856del
STAD	TCGA-BR-6452-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93712394:93712511:93720027:93720171:93721891:93722095,	93720028	93720171	93720123	93720124	Frame_Shift_Ins	-	A	p.L1098fs
STAD	TCGA-BR-6452-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000519092.1,ENST00000360863.6,ENST00000519408.1	chr8	101084372:101084458:101092361:101092583:101105674:101105737,	101092362	101092583	101092539	101092539	Frame_Shift_Del	A	-	p.E55fs
STAD	TCGA-BR-6452-01	ZMIZ2	ENST00000416856.1	chr7	44796023:44796138:44796573:44796748:44796976:44797160,	44796574	44796748	44796612	44796612	Frame_Shift_Del	G	-	p.A77fs
STAD	TCGA-BR-6452-01	ZMIZ2	ENST00000309315.4,ENST00000441627.1,ENST00000265346.7	chr7	44796023:44796138:44796545:44796748:44796976:44797160,	44796546	44796748	44796612	44796612	Frame_Shift_Del	G	-	p.A77fs
STAD	TCGA-BR-6452-01	PAK3	ENST00000446737.1,ENST00000519681.1,ENST00000518291.1,ENST00000360648.4,ENST00000372010.1,ENST00000372007.5,ENST00000425146.1,ENST00000417227.1,ENST00000262836.4	chrX	110406142:110406274:110406789:110406955:110416245:110416309,	110406790	110406955	110406911	110406912	Frame_Shift_Ins	-	A	p.R277fs
STAD	TCGA-BR-6452-01	TMTC3	ENST00000266712.6	chr12	88584229:88584399:88586380:88586607:88588614:88593664,	88586381	88586607	88586525	88586525	Frame_Shift_Del	A	-	p.L617fs
STAD	TCGA-BR-6452-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95357932	95357932	Frame_Shift_Del	T	-	p.A572fs
STAD	TCGA-BR-6452-01	SNRPD3	ENST00000404603.1,ENST00000439775.1,ENST00000402849.1	chr22	24951999:24952039:24953624:24953768:24963951:24964005,	24953625	24953768	24953712	24953712	Frame_Shift_Del	A	-	p.N23fs
STAD	TCGA-BR-6452-01	PDHX	ENST00000448838.3,ENST00000227868.4	chr11	34981966:34982065:34988186:34988361:34991685:34991833,	34988187	34988361	34988311	34988311	Frame_Shift_Del	C	-	p.Y255fs
STAD	TCGA-BR-6452-01	PPIL6	ENST00000440797.2,ENST00000447468.3	chr6	109752493:109752548:109757306:109757402:109761658:109761707,	109757307	109757402	109757309	109757309	Frame_Shift_Del	T	-	p.R77fs
STAD	TCGA-BR-6452-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623321	623321	Frame_Shift_Del	A	-	p.L344fs
STAD	TCGA-BR-6452-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635181	32635181	Frame_Shift_Del	T	-	p.I895fs
STAD	TCGA-BR-6452-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81412243	81412243	Frame_Shift_Del	A	-	p.Q496fs
STAD	TCGA-BR-6452-01	AP3M2	ENST00000521280.1,ENST00000396926.3,ENST00000174653.3,ENST00000518421.1	chr8	42022944:42023078:42024681:42024889:42025183:42025273,	42024682	42024889	42024863	42024864	Frame_Shift_Del	AC	-	p.328_329del
STAD	TCGA-BR-6452-01	POLN	ENST00000511885.2,ENST00000382865.1,ENST00000515357.1	chr4	2181034:2181192:2194930:2195043:2200250:2200444,	2194931	2195043	2194956	2194956	Frame_Shift_Del	A	-	p.G333fs
STAD	TCGA-BR-6452-01	HDAC11	ENST00000433119.1	chr3	13524963:13525064:13538235:13538352:13540012:13540055,13524966:13525064:13538235:13538352:13542212:13542289,	13538236	13538352	13538268	13538268	Frame_Shift_Del	C	-	p.I95fs
STAD	TCGA-BR-6452-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-BR-6452-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-BR-6452-01	PLOD2	ENST00000282903.5,ENST00000461497.1,ENST00000494950.1	chr3	145794568:145794682:145795648:145795711:145796902:145797044,	145795649	145795711	145795653	145795653	Frame_Shift_Del	G	-	p.P520fs
STAD	TCGA-BR-6452-01	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844497	27844498	Frame_Shift_Ins	-	A	p.P577fs
STAD	TCGA-BR-6452-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114069198	114069198	Frame_Shift_Del	T	-	p.K576fs
STAD	TCGA-BR-6452-01	KREMEN2	ENST00000303746.5,ENST00000319500.6,ENST00000575769.1,ENST00000572045.1	chr16	3016140:3016232:3016325:3016450:3016642:3016796,	3016326	3016450	3016364	3016364	Frame_Shift_Del	C	-	p.A133fs
STAD	TCGA-BR-6452-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87688969:87689129:87690921:87691136:87691253:87691352,	87690922	87691136	87690974	87690974	Frame_Shift_Del	T	-	p.S1519fs
STAD	TCGA-BR-6452-01	AHCTF1	ENST00000366508.1,ENST00000326225.3,ENST00000391829.2	chr1	247059136:247059227:247061509:247061638:247062752:247062782,	247061510	247061638	247061597	247061600	Frame_Shift_Del	TTCA	-	p.521_522del
STAD	TCGA-BR-6452-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212518	185212518	Frame_Shift_Del	A	-	p.F156fs
STAD	TCGA-BR-6452-01	CLCA4	ENST00000370563.3,ENST00000263723.5	chr1	87025614:87025755:87025893:87026041:87029343:87029452,	87025894	87026041	87026013	87026013	Frame_Shift_Del	A	-	p.G140fs
STAD	TCGA-BR-6452-01	SAMD4B	ENST00000598913.1,ENST00000314471.6,ENST00000596368.1	chr19	39860731:39860765:39866289:39866529:39867076:39867186,	39866290	39866529	39866351	39866351	Frame_Shift_Del	C	-	p.S243fs
STAD	TCGA-BR-6452-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169042	33169042	Frame_Shift_Del	C	-	p.A7fs
STAD	TCGA-BR-6452-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72152078:72152348:72165697:72165844:72169097:72169222,	72165698	72165844	72165809	72165809	Frame_Shift_Del	G	-	p.V1162fs
STAD	TCGA-BR-6452-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20438482:20438617:20441343:20441749:20444250:20444476,	20441344	20441749	20441551	20441554	Frame_Shift_Del	AATA	-	p.496_497del
STAD	TCGA-BR-6452-01	ARPC1A	ENST00000262942.5,ENST00000432786.1,ENST00000432884.2,ENST00000441989.2	chr7	98941915:98942138:98946474:98946582:98951531:98951569,	98946475	98946582	98946494	98946494	Frame_Shift_Del	A	-	p.I137fs
STAD	TCGA-BR-6452-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32818720:32818926:32819885:32820016:32820164:32820279,	32819886	32820016	32819902	32819903	Frame_Shift_Ins	-	A	p.F336fs
STAD	TCGA-BR-6452-01	ZNF445	ENST00000396077.2,ENST00000460529.1,ENST00000425708.2	chr3	44492395:44492454:44492805:44492974:44496612:44497188,	44492806	44492974	44492863	44492863	Frame_Shift_Del	C	-	p.D181fs
STAD	TCGA-BR-6452-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232949	19232950	Frame_Shift_Ins	-	A	p.S467fs
STAD	TCGA-BR-6452-01	GLB1L2	ENST00000535456.2,ENST00000531081.1,ENST00000529077.1,ENST00000389881.3,ENST00000525089.2,ENST00000339772.7	chr11	134217229:134217327:134226194:134226287:134228953:134229035,	134226195	134226287	134226203	134226204	Frame_Shift_Ins	-	G	p.R189fs
STAD	TCGA-BR-6452-01	YTHDC1	ENST00000355665.3,ENST00000579690.1,ENST00000344157.4	chr4	69184543:69184580:69185840:69185923:69188466:69188633,	69185841	69185923	69185860	69185861	Frame_Shift_Ins	-	G	p.P555fs
STAD	TCGA-BR-6452-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14106661	14106662	Frame_Shift_Del	GA	-	p.790_791del
STAD	TCGA-BR-6452-01	SLC16A10	ENST00000368851.5	chr6	111493897:111494042:111498414:111498868:111527794:111527938,	111498415	111498868	111498763	111498763	Frame_Shift_Del	A	-	p.P279fs
STAD	TCGA-BR-6452-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36897426	36897427	Frame_Shift_Ins	-	A	p.L1219fs
STAD	TCGA-BR-6452-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699539	169699539	Frame_Shift_Del	A	-	p.E181fs
STAD	TCGA-BR-6452-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19290755:19290874:19296005:19296244:19298053:19298120,	19296006	19296244	19296164	19296164	Frame_Shift_Del	T	-	p.P320fs
STAD	TCGA-BR-6452-01	MIPEP	ENST00000382172.3	chr13	24380088:24380208:24383988:24384063:24410378:24410488,	24383989	24384063	24384050	24384050	Frame_Shift_Del	T	-	p.N556fs
STAD	TCGA-BR-6452-01	TMEM219	ENST00000279396.6,ENST00000566848.1,ENST00000414689.2,ENST00000561899.2,ENST00000570255.1	chr16	29974736:29974910:29979345:29979575:29982728:29982899,	29979346	29979575	29979478	29979479	Frame_Shift_Ins	-	G	p.E163fs
STAD	TCGA-BR-6452-01	GNPDA2	ENST00000507917.1	chr4	44712969:44713154:44719129:44719312:44724100:44724259,	44719130	44719312	44719209	44719210	Frame_Shift_Ins	-	T	p.N110fs
STAD	TCGA-BR-6452-01	PBXIP1	ENST00000368463.3,ENST00000368460.3,ENST00000490230.1	chr1	154923946:154924011:154924270:154924397:154926146:154926233,	154924271	154924397	154924316	154924317	Frame_Shift_Ins	-	T	p.S45fs
STAD	TCGA-BR-6452-01	PBXIP1	ENST00000493133.1	chr1	154923707:154923873:154923946:154924397:154926146:154926233,	154923947	154924397	154924316	154924317	Frame_Shift_Ins	-	T	p.S45fs
STAD	TCGA-BR-6452-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507219	74507220	Frame_Shift_Ins	-	T	p.Y466fs
STAD	TCGA-BR-6452-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939626	76939627	Frame_Shift_Ins	-	A	p.L374fs
STAD	TCGA-BR-6452-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978038	15978038	Frame_Shift_Del	T	-	p.K18fs
STAD	TCGA-BR-6452-01	CUZD1	ENST00000392790.1,ENST00000368904.1,ENST00000545804.1	chr10	124598532:124598747:124600693:124600844:124605277:124605691,	124600694	124600844	124600721	124600722	Frame_Shift_Ins	-	T	p.S69fs
STAD	TCGA-BR-6452-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100589717:100589861:100654038:100654726:100673581:100673719,	100654039	100654726	100654346	100654346	Frame_Shift_Del	A	-	p.E1868fs
STAD	TCGA-BR-6452-01	CERK	ENST00000216264.8,ENST00000443629.1,ENST00000541677.1	chr22	47082999:47083103:47085888:47086097:47087468:47087674,	47085889	47086097	47086002	47086002	Frame_Shift_Del	C	-	p.K477fs
STAD	TCGA-BR-6452-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178989	33178990	Frame_Shift_Ins	-	G	p.S170fs
STAD	TCGA-BR-6452-01	DLG1	ENST00000448528.2,ENST00000419354.1,ENST00000392381.3,ENST00000346964.2	chr3	196869588:196869639:196876613:196876667:196921295:196921460,196869588:196869639:196876613:196876667:196910445:196910505,196869588:196869639:196876613:196876667:196888510:196888609,	196876614	196876667	196876654	196876654	Frame_Shift_Del	G	-	p.P199fs
STAD	TCGA-BR-6452-01	TEX10	ENST00000429235.1,ENST00000535814.1,ENST00000374902.4,ENST00000537512.1	chr9	103092212:103092451:103102538:103102651:103108353:103108597,	103102539	103102651	103102604	103102604	Frame_Shift_Del	A	-	p.M399X
STAD	TCGA-BR-6452-01	KIF1B	ENST00000377086.1,ENST00000465635.1,ENST00000377081.1,ENST00000483340.1,ENST00000263934.6	chr1	10405902:10406011:10407818:10407885:10408706:10408791,	10407819	10407885	10407870	10407871	Frame_Shift_Ins	-	T	p.T1237fs
STAD	TCGA-BR-6452-01	ABCB9	ENST00000540285.1,ENST00000537276.1,ENST00000546289.1,ENST00000426173.2	chr12	123419819:123419978:123424657:123424831:123428937:123429066,	123424658	123424831	123424729	123424729	Frame_Shift_Del	G	-	p.L558fs
STAD	TCGA-BR-6452-01	MRPS5	ENST00000475895.1,ENST00000345084.5,ENST00000272418.2	chr2	95775660:95775786:95780810:95780948:95783609:95783690,	95780811	95780948	95780889	95780890	Frame_Shift_Ins	-	T	p.L67fs
STAD	TCGA-BR-6452-01	LUZP4	ENST00000371920.3	chrX	114536556:114536688:114537864:114537983:114540769:114542119,	114537865	114537983	114537909	114537909	Frame_Shift_Del	A	-	p.D89fs
STAD	TCGA-BR-6452-01	TIPARP	ENST00000295924.7	chr3	156392130:156392585:156395445:156396403:156411808:156411977,	156395446	156396403	156396296	156396297	Frame_Shift_Ins	-	A	p.I270fs
STAD	TCGA-BR-6452-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016000	1016001	Frame_Shift_Ins	-	TGAGA	p.Q2267fs
STAD	TCGA-BR-6452-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797397	75797397	Frame_Shift_Del	G	-	p.P3026fs
STAD	TCGA-BR-6452-01	CRTC2	ENST00000487235.1	chr1	153923735:153924142:153924493:153924738:153924872:153924922,153921647:153921860:153924493:153924738:153924872:153924922,	153924494	153924738	153924673	153924673	Frame_Shift_Del	C	-	p.G273fs
STAD	TCGA-BR-6452-01	CHRNA2	ENST00000523695.1	chr8	27319119:27319271:27320495:27321377:27324745:27324855,	27320496	27321377	27320855	27320855	Frame_Shift_Del	C	-	p.A369fs
STAD	TCGA-BR-6452-01	CHRNA2	ENST00000520933.2,ENST00000407991.1,ENST00000240132.2,ENST00000523529.1	chr8	27319119:27319271:27320495:27321510:27324745:27324855,	27320496	27321510	27320855	27320855	Frame_Shift_Del	C	-	p.A369fs
STAD	TCGA-BR-6452-01	CBLN2	ENST00000269503.4,ENST00000585159.1	chr18	70205384:70205608:70205887:70206007:70209038:70209561,	70205888	70206007	70205945	70205945	Frame_Shift_Del	T	-	p.G141fs
STAD	TCGA-BR-6452-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73744921:73745126:73746191:73746349:73746760:73746871,	73746192	73746349	73746239	73746239	Frame_Shift_Del	C	-	p.P1121fs
STAD	TCGA-BR-6452-01	YIPF6	ENST00000374643.3,ENST00000374622.2,ENST00000451537.1,ENST00000462683.1	chrX	67733168:67733247:67738611:67738654:67741213:67741339,	67738612	67738654	67738621	67738621	Frame_Shift_Del	G	-	p.W92fs
STAD	TCGA-BR-6452-01	DDAH2	ENST00000437288.1	chr6	31695382:31695469:31695949:31696069:31696422:31696522,31695382:31695469:31695949:31696069:31696227:31696283,31695319:31695420:31695949:31696069:31696227:31696283,	31695950	31696069	31696001	31696002	Frame_Shift_Ins	-	C	p.G180fs
STAD	TCGA-BR-6452-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135202582	135202582	Frame_Shift_Del	C	-	p.G1468fs
STAD	TCGA-BR-6452-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883808	4883808	Frame_Shift_Del	G	-	p.P293fs
STAD	TCGA-BR-6452-01	PLXDC2	ENST00000377238.2,ENST00000377252.4	chr10	20335797:20335944:20357098:20357168:20432223:20432346,	20357099	20357168	20357165	20357165	Frame_Shift_Del	G	-	p.T179fs
STAD	TCGA-BR-6452-01	GYG1	ENST00000461191.1	chr3	148714617:148714691:148727062:148727189:148741839:148742021,148714617:148714691:148727062:148727189:148744546:148745134,148714528:148714679:148727062:148727189:148741839:148742042,	148727063	148727189	148727065	148727065	Frame_Shift_Del	G	-	p.G161fs
STAD	TCGA-BR-6452-01	DAP3	ENST00000343043.3,ENST00000368336.5,ENST00000421487.2,ENST00000471642.2,ENST00000535183.1	chr1	155701734:155701824:155706736:155706854:155707947:155708320,	155706737	155706854	155706792	155706793	Frame_Shift_Ins	-	A	p.P350fs
STAD	TCGA-BR-6452-01	DNAJC7	ENST00000588814.1,ENST00000316603.7,ENST00000426588.3,ENST00000457167.4,ENST00000586335.1	chr17	40134001:40134025:40134272:40134419:40135580:40135654,	40134273	40134419	40134398	40134398	Frame_Shift_Del	T	-	p.N369fs
STAD	TCGA-BR-6452-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859010	32859010	Frame_Shift_Del	C	-	p.G111fs
STAD	TCGA-BR-6452-01	NDUFS2	ENST00000392179.4,ENST00000467295.1,ENST00000465923.1,ENST00000476409.2,ENST00000483804.1,ENST00000367993.3	chr1	161179654:161179721:161179900:161179978:161180093:161180179,	161179901	161179978	161179937	161179937	Frame_Shift_Del	T	-	p.Q246fs
STAD	TCGA-BR-6452-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088788	27088788	Frame_Shift_Del	G	-	p.Q799fs
STAD	TCGA-BR-6452-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32818096:32818294:32818720:32818926:32819885:32820011,	32818721	32818926	32818896	32818896	Frame_Shift_Del	G	-	p.T352fs
STAD	TCGA-BR-6452-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42050006	42050007	Frame_Shift_Ins	-	G	p.E155fs
STAD	TCGA-BR-6452-01	EFHC1	ENST00000480623.1,ENST00000433625.2,ENST00000371068.5,ENST00000538167.1	chr6	52329692:52329913:52334130:52334271:52343834:52344048,	52334131	52334271	52334208	52334208	Frame_Shift_Del	A	-	p.P405fs
STAD	TCGA-BR-6452-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96859602:96860861:96863847:96864033:96866556:96866667,	96863848	96864033	96864017	96864017	Frame_Shift_Del	T	-	p.L728fs
STAD	TCGA-BR-6452-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573569	121573569	Frame_Shift_Del	A	-	p.S79X
STAD	TCGA-BR-6452-01	DNAJC24	ENST00000465995.1	chr11	31429656:31429877:31436357:31436496:31447833:31447902,31392353:31392406:31436357:31436496:31447833:31447902,	31436358	31436496	31436468	31436468	Frame_Shift_Del	A	-	p.T74fs
STAD	TCGA-BR-6452-01	QRSL1	ENST00000369044.1,ENST00000369046.4	chr6	107088697:107088796:107090868:107090965:107096899:107097076,	107090869	107090965	107090936	107090936	Frame_Shift_Del	A	-	p.G117fs
STAD	TCGA-BR-6452-01	ST7L	ENST00000360743.4	chr1	113068607:113068733:113084572:113084712:113093222:113093315,113068607:113068733:113084572:113084712:113098489:113098498,	113084573	113084712	113084682	113084682	Frame_Shift_Del	T	-	p.K507fs
STAD	TCGA-BR-6452-01	SOX6	ENST00000316399.6,ENST00000396356.3	chr11	16007810:16007966:16010542:16010716:16036487:16036596,	16010543	16010716	16010610	16010611	Frame_Shift_Ins	-	T	p.K646fs
STAD	TCGA-BR-6452-01	SOX6	ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000527840.1,ENST00000352083.6	chr11	16007810:16007966:16010542:16010776:16036487:16036596,	16010543	16010776	16010610	16010611	Frame_Shift_Ins	-	T	p.K646fs
STAD	TCGA-BR-6452-01	MGA	ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42032254:42032401:42034743:42035370:42040834:42040910,	42034744	42035370	42034971	42034971	Frame_Shift_Del	T	-	p.V1604fs
STAD	TCGA-BR-6452-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000490904.2	chr6	161412875:161413115:161455290:161455481:161469647:161469835,	161455291	161455481	161455391	161455391	Frame_Shift_Del	C	-	p.S84fs
STAD	TCGA-BR-6452-01	PITRM1	ENST00000451104.2,ENST00000224949.4,ENST00000380989.2,ENST00000430362.1	chr10	3199626:3199723:3200231:3200345:3201105:3201150,	3200232	3200345	3200265	3200266	Frame_Shift_Ins	-	T	p.S406fs
STAD	TCGA-BR-6452-01	SLC6A5	ENST00000525748.1	chr11	20622674:20623211:20625831:20625970:20628552:20628684,	20625832	20625970	20625905	20625906	Frame_Shift_Ins	-	G	p.V205fs
STAD	TCGA-BR-6452-01	ZCWPW1	ENST00000490089.1,ENST00000490721.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100001800:100001867:100002635:100002716:100004316:100004421,	100002636	100002716	100002680	100002680	Frame_Shift_Del	C	-	p.V404fs
STAD	TCGA-BR-6452-01	PRPF40A	ENST00000448428.1,ENST00000450303.2,ENST00000354363.6	chr2	153551055:153551136:153572508:153572640:153573869:153573945,	153572509	153572640	153572534	153572534	Frame_Shift_Del	G	-	p.P64fs
STAD	TCGA-BR-6452-01	PPIL6	ENST00000424445.2,ENST00000417394.2,ENST00000518648.1,ENST00000521072.2	chr6	109721362:109721373:109740389:109740446:109748049:109748155,	109740390	109740446	109740430	109740430	Frame_Shift_Del	T	-	p.G217fs
STAD	TCGA-BR-6452-01	HOOK3	ENST00000526882.1,ENST00000307602.4	chr8	42852732:42852780:42857249:42857284:42862989:42863072,	42857250	42857284	42857261	42857261	Frame_Shift_Del	A	-	p.L544fs
STAD	TCGA-BR-6452-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47618517	47618517	Frame_Shift_Del	G	-	p.G334fs
STAD	TCGA-BR-6452-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877230	38877233	Frame_Shift_Del	TCTC	-	p.122_123del
STAD	TCGA-BR-6452-01	KAT6B	ENST00000287239.4	chr10	76732264:76732397:76735156:76736088:76737073:76737195,	76735157	76736088	76735770	76735770	Frame_Shift_Del	A	-	p.R558fs
STAD	TCGA-BR-6452-01	POLQ	ENST00000264233.5	chr3	121190836:121191011:121192196:121192334:121195386:121195580,	121192197	121192334	121192306	121192306	Frame_Shift_Del	G	-	p.P2145fs
STAD	TCGA-BR-6452-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108163345:108163520:108164039:108164204:108165653:108165786,	108164040	108164204	108164163	108164164	Frame_Shift_Ins	-	A	p.Q1579fs
STAD	TCGA-BR-6452-01	SHROOM1	ENST00000378676.1	chr5	132159314:132159456:132159541:132160111:132160306:132160308,132159314:132159456:132159541:132160111:132160709:132160765,	132159542	132160111	132159772	132159773	Frame_Shift_Ins	-	C	p.G527fs
STAD	TCGA-BR-6452-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5757990:5758089:5785278:5785491:5795334:5795444,	5785279	5785491	5785362	5785362	Frame_Shift_Del	C	-	p.L549fs
STAD	TCGA-BR-6452-01	USP8	ENST00000433963.1,ENST00000559329.1,ENST00000561330.1,ENST00000560730.1,ENST00000558091.1,ENST00000396444.3,ENST00000560297.1,ENST00000307179.4	chr15	50731239:50731374:50733545:50733690:50751196:50751267,50731239:50731374:50733545:50733690:50741596:50741637,	50733546	50733690	50733661	50733661	Frame_Shift_Del	A	-	p.I73fs
STAD	TCGA-BR-6452-01	BRD3	ENST00000357885.2,ENST00000371834.2,ENST00000303407.7	chr9	136916683:136916831:136917427:136917565:136918386:136918712,	136917428	136917565	136917543	136917543	Frame_Shift_Del	T	-	p.N79fs
STAD	TCGA-BR-6452-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255498	156255498	Frame_Shift_Del	C	-	p.M160fs
STAD	TCGA-BR-6452-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255498	156255498	Frame_Shift_Del	C	-	p.M160fs
STAD	TCGA-BR-6452-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255498	156255498	Frame_Shift_Del	C	-	p.M160fs
STAD	TCGA-BR-6452-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087914	109087914	Frame_Shift_Del	T	-	p.V710fs
STAD	TCGA-BR-6452-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134232957	134232957	Frame_Shift_Del	C	-	p.R161fs
STAD	TCGA-BR-6452-01	TMEM182	ENST00000486293.1	chr2	103380787:103380886:103414321:103414459:103431206:103431563,103380787:103380886:103414321:103414459:103459870:103460352,	103414322	103414459	103414435	103414435	Frame_Shift_Del	G	-	p.A148fs
STAD	TCGA-BR-6452-01	CDC7	ENST00000426137.1,ENST00000428239.1,ENST00000234626.6,ENST00000497611.1	chr1	91967327:91967388:91973410:91973494:91973818:91973954,	91973411	91973494	91973481	91973482	Frame_Shift_Ins	-	A	p.D62fs
STAD	TCGA-BR-6452-01	ZC3H14	ENST00000556000.1,ENST00000554020.1,ENST00000251038.5,ENST00000555900.1,ENST00000393514.5	chr14	89068378:89068427:89069171:89069404:89073586:89073707,	89069172	89069404	89069237	89069238	Frame_Shift_Ins	-	C	p.S527fs
STAD	TCGA-BR-6452-01	ZC3H14	ENST00000555755.1	chr14	89068378:89068427:89069171:89069389:89073586:89073707,	89069172	89069389	89069237	89069238	Frame_Shift_Ins	-	C	p.S527fs
STAD	TCGA-BR-6452-01	FAM3C	ENST00000359943.3,ENST00000412653.1,ENST00000426156.1	chr7	121000145:121000181:121002950:121003001:121004183:121004242,	121002951	121003001	121002996	121002996	Frame_Shift_Del	T	-	p.T113fs
STAD	TCGA-BR-6452-01	HPSE2	ENST00000370549.1,ENST00000404542.1,ENST00000370552.3,ENST00000370546.1	chr10	100380358:100380465:100401603:100401697:100453656:100453704,	100401604	100401697	100401612	100401612	Frame_Shift_Del	T	-	p.I364fs
STAD	TCGA-BR-6452-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561448	142561448	Frame_Shift_Del	G	-	p.P53fs
STAD	TCGA-BR-6452-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.R587fs
STAD	TCGA-BR-6452-01	RNF157	ENST00000319945.6	chr17	74169782:74169871:74208444:74208563:74236233:74236382,	74208445	74208563	74208459	74208460	Frame_Shift_Ins	-	C	p.N65fs
STAD	TCGA-BR-6452-01	PYGM	ENST00000164139.3	chr11	64525250:64525382:64525717:64525821:64525908:64525987,	64525718	64525821	64525745	64525745	Frame_Shift_Del	A	-	p.N168fs
STAD	TCGA-BR-6452-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000488914.1,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41266016:41266244:41266444:41266698:41266824:41267047,	41266445	41266698	41266654	41266654	Frame_Shift_Del	C	-	p.T150fs
STAD	TCGA-BR-6452-01	KIAA0319	ENST00000543707.1,ENST00000378214.3,ENST00000430948.2,ENST00000535378.1	chr6	24547255:24547571:24551661:24551753:24554768:24554859,	24551662	24551753	24551725	24551725	Frame_Shift_Del	T	-	p.T993fs
STAD	TCGA-BR-6452-01	TTC37	ENST00000513823.1,ENST00000358746.2	chr5	94877558:94877610:94878887:94879031:94882764:94882855,	94878888	94879031	94878927	94878927	Frame_Shift_Del	T	-	p.A66fs
STAD	TCGA-BR-6452-01	AXL	ENST00000593513.1,ENST00000359092.3,ENST00000599659.1,ENST00000301178.4	chr19	41743848:41744059:41744374:41744514:41745068:41745219,	41744375	41744514	41744385	41744385	Frame_Shift_Del	C	-	p.G335fs
STAD	TCGA-BR-6452-01	COL1A1	ENST00000476387.1,ENST00000225964.5	chr17	48270035:48270054:48270157:48270211:48270354:48270408,	48270158	48270211	48270162	48270162	Frame_Shift_Del	G	-	p.P624fs
STAD	TCGA-BR-6452-01	NUGGC	ENST00000341513.6,ENST00000413272.2	chr8	27888759:27888898:27891056:27891214:27898567:27898732,	27891057	27891214	27891059	27891059	Frame_Shift_Del	A	-	p.R590fs
STAD	TCGA-BR-6452-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000559219.1,ENST00000389037.3,ENST00000561220.2	chr15	45439743:45439856:45440101:45440195:45440469:45440645,	45440102	45440195	45440114	45440114	Frame_Shift_Del	A	-	p.E854fs
STAD	TCGA-BR-6452-01	KIF6	ENST00000287152.7,ENST00000538893.1,ENST00000373215.3,ENST00000373216.3,ENST00000458470.1	chr6	39563829:39564036:39580964:39581094:39602624:39602734,	39580965	39581094	39580993	39580993	Frame_Shift_Del	A	-	p.L204fs
STAD	TCGA-BR-6452-01	SMC4	ENST00000472991.1	chr3	160117437:160117485:160120463:160120655:160122165:160122292,160119777:160119881:160120463:160120655:160122115:160122124,160117456:160117537:160120463:160120655:160122115:160122124,	160120464	160120655	160120548	160120549	Frame_Shift_Ins	-	A	p.Q135fs
STAD	TCGA-BR-6452-01	PRKAG2	ENST00000488258.1	chr7	151292430:151292540:151372505:151372723:151478237:151478517,	151372506	151372723	151372597	151372597	Frame_Shift_Del	G	-	p.P198fs
STAD	TCGA-BR-6452-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459272	27459272	Frame_Shift_Del	A	-	p.N461fs
STAD	TCGA-BR-6452-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389836	11389837	Frame_Shift_Ins	-	A	p.W138fs
STAD	TCGA-BR-6452-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181545	18181545	Frame_Shift_Del	G	-	p.R758fs
STAD	TCGA-BR-6452-01	CLIC1	ENST00000395892.1,ENST00000375784.3,ENST00000375780.2,ENST00000375779.2	chr6	31701342:31701449:31701612:31701738:31701930:31702040,	31701613	31701738	31701702	31701702	Frame_Shift_Del	C	-	p.Q63fs
STAD	TCGA-BR-6452-01	SF3B3	ENST00000302516.5,ENST00000563739.1	chr16	70598967:70599173:70599270:70599427:70601313:70601439,	70599271	70599427	70599416	70599416	Frame_Shift_Del	T	-	p.E938fs
STAD	TCGA-BR-6452-01	TAF2	ENST00000378164.2	chr8	120816200:120816259:120818522:120818641:120843916:120843971,120816200:120816259:120818522:120818641:120831585:120831746,	120818523	120818641	120818621	120818622	Frame_Shift_Ins	-	A	p.S107fs
STAD	TCGA-BR-6452-01	KCNMA1	ENST00000372408.2,ENST00000372421.5,ENST00000372443.1,ENST00000286627.5,ENST00000372440.1,ENST00000372403.4,ENST00000604624.1,ENST00000404857.1	chr10	78713558:78713682:78729731:78729825:78771724:78771801,	78729732	78729825	78729786	78729787	Frame_Shift_Del	TT	-	p.769_769del
STAD	TCGA-BR-6452-01	IL7R	ENST00000509668.1,ENST00000303115.3	chr5	35873635:35873750:35874550:35874644:35875613:35875623,	35874551	35874644	35874636	35874637	Frame_Shift_Ins	-	A	p.W264fs
STAD	TCGA-BR-6452-01	POGK	ENST00000367875.1,ENST00000449930.1,ENST00000367876.4	chr1	166810191:166810325:166815848:166815975:166816730:166816829,	166815849	166815975	166815879	166815880	Frame_Shift_Ins	-	A	p.Y55_F56delinsX
STAD	TCGA-BR-6452-01	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687267	5687267	Frame_Shift_Del	T	-	p.N271fs
STAD	TCGA-BR-6452-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305786	27305786	Frame_Shift_Del	G	-	p.L449fs
STAD	TCGA-BR-6452-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
STAD	TCGA-BR-6458-01	MIS18BP1	ENST00000454990.1,ENST00000310806.4	chr14	45706899:45706924:45711236:45711721:45711963:45712077,	45711237	45711721	45711613	45711614	Frame_Shift_Del	CT	-	p.256_256del
STAD	TCGA-D7-8572-01	TPCN2	ENST00000294309.3,ENST00000542467.1	chr11	68822188:68822265:68822642:68822820:68825045:68825162,	68822643	68822820	68822739	68822751	Frame_Shift_Del	TCCCTGGGAGCCG	-	p.116_120del
STAD	TCGA-D7-8572-01	CCDC158	ENST00000388914.3	chr4	77252496:77252556:77253584:77253644:77255174:77255320,	77253585	77253644	77253601	77253605	Frame_Shift_Del	ATCTC	-	p.951_952del
STAD	TCGA-CD-8531-01	CDC42BPB	ENST00000559043.1,ENST00000361246.2	chr14	103429397:103429492:103430838:103430987:103432618:103432724,	103430839	103430987	103430900	103430900	Frame_Shift_Del	C	-	p.A889fs
STAD	TCGA-CD-8531-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226924472	226924473	Frame_Shift_Ins	-	CTGCGAGGAG	p.V230fs
STAD	TCGA-CD-8531-01	EEF1A1	ENST00000490569.1,ENST00000488500.1,ENST00000331523.2,ENST00000356303.2,ENST00000309268.6	chr6	74228920:74228951:74229059:74229239:74229605:74229700,	74229060	74229239	74229194	74229209	Frame_Shift_Del	TCAGTTTATCCAAGAC	-	p.59_64del
STAD	TCGA-BR-8485-01	B4GALT6	ENST00000237019.7,ENST00000306851.5	chr18	29210921:29211109:29218606:29218723:29225317:29225442,	29218607	29218723	29218671	29218671	Frame_Shift_Del	A	-	p.F175fs
STAD	TCGA-BR-8485-01	IFT57	ENST00000264538.3,ENST00000478157.1	chr3	107886639:107886711:107910367:107910490:107925474:107925543,	107910368	107910490	107910459	107910460	Frame_Shift_Del	AT	-	p.229_229del
STAD	TCGA-F1-6874-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.H72fs
STAD	TCGA-F1-6874-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107491918	107491918	Frame_Shift_Del	A	-	p.L450fs
STAD	TCGA-F1-6874-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203329548:203329702:203332241:203332412:203378441:203378552,	203332242	203332412	203332384	203332384	Frame_Shift_Del	T	-	p.N130fs
STAD	TCGA-F1-6874-01	COL1A1	ENST00000225964.5	chr17	48272794:48272839:48272927:48273026:48273283:48273337,	48272928	48273026	48272956	48272956	Frame_Shift_Del	G	-	p.P376fs
STAD	TCGA-F1-6874-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261079	151261079	Frame_Shift_Del	C	-	p.R730fs
STAD	TCGA-F1-6874-01	ZMPSTE24	ENST00000372759.3	chr1	40734090:40734207:40735646:40735799:40737565:40737707,	40735647	40735799	40735757	40735757	Frame_Shift_Del	T	-	p.Y195fs
STAD	TCGA-F1-6874-01	PRMT3	ENST00000529592.1,ENST00000330796.5,ENST00000437750.2,ENST00000331079.6	chr11	20515464:20515515:20515712:20515800:20529849:20530254,	20515713	20515800	20515777	20515777	Frame_Shift_Del	A	-	p.E488fs
STAD	TCGA-F1-6874-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149557773	149557773	Frame_Shift_Del	G	-	p.T508fs
STAD	TCGA-F1-6874-01	LPCAT3	ENST00000261407.4,ENST00000536797.1,ENST00000543794.1	chr12	7091836:7091943:7092592:7092700:7125577:7125778,	7092593	7092700	7092599	7092600	Frame_Shift_Ins	-	A	p.N85_F86delinsX
STAD	TCGA-F1-6874-01	TIE1	ENST00000538015.1,ENST00000372476.3,ENST00000441333.2	chr1	43772510:43772666:43772812:43772944:43773102:43773243,	43772813	43772944	43772910	43772910	Frame_Shift_Del	C	-	p.C246fs
STAD	TCGA-F1-6874-01	ARHGAP17	ENST00000572314.1,ENST00000441763.2,ENST00000303665.5,ENST00000289968.6,ENST00000570841.1	chr16	24958802:24958916:24960724:24960805:24963609:24963691,	24960725	24960805	24960783	24960784	Frame_Shift_Ins	-	T	p.L357fs
STAD	TCGA-F1-6874-01	NRDE2	ENST00000354366.3	chr14	90778737:90778887:90782921:90783155:90784348:90784457,	90782922	90783155	90782994	90782994	Frame_Shift_Del	G	-	p.T112fs
STAD	TCGA-F1-6874-01	NCKAP5	ENST00000427594.1,ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133887549:133887683:133971287:133971351:134060608:134060682,	133971288	133971351	133971293	133971293	Frame_Shift_Del	C	-	p.A68fs
STAD	TCGA-F1-6874-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629104	18629104	Frame_Shift_Del	G	-	p.W122fs
STAD	TCGA-F1-6874-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073232	197073232	Frame_Shift_Del	T	-	p.I1717fs
STAD	TCGA-F1-6874-01	GPS1	ENST00000578552.1,ENST00000584460.1,ENST00000355130.2,ENST00000320548.4,ENST00000306823.6,ENST00000392358.2	chr17	80014161:80014267:80014345:80014426:80014504:80014642,	80014346	80014426	80014373	80014374	Frame_Shift_Ins	-	C	p.A395fs
STAD	TCGA-F1-6874-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-F1-6874-01	MAL2	ENST00000276681.6,ENST00000522112.2,ENST00000521748.1,ENST00000531508.1,ENST00000534619.1	chr8	120233826:120233997:120252404:120252560:120255656:120255762,	120252405	120252560	120252426	120252427	Frame_Shift_Ins	-	T	p.V109fs
STAD	TCGA-F1-6874-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911091	29911092	Frame_Shift_Ins	-	G	p.D130fs
STAD	TCGA-F1-6874-01	HPS5	ENST00000352460.3	chr11	18309439:18309560:18312988:18313566:18314445:18314523,18309439:18309560:18312988:18313566:18316566:18316716,	18312989	18313566	18313386	18313387	Frame_Shift_Ins	-	T	p.K681fs
STAD	TCGA-F1-6874-01	ARHGEF10	ENST00000522435.1,ENST00000520359.1,ENST00000518288.1,ENST00000398564.1,ENST00000349830.3,ENST00000523711.1,ENST00000262112.6	chr8	1846601:1846691:1851446:1851617:1853736:1853882,	1851447	1851617	1851547	1851548	Frame_Shift_Del	AG	-	p.584_584del
STAD	TCGA-F1-6874-01	DNAH5	ENST00000265104.4	chr5	13708231:13708444:13714513:13714729:13716595:13716799,	13714514	13714729	13714533	13714533	Frame_Shift_Del	G	-	p.P4369fs
STAD	TCGA-F1-6874-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088788	27088788	Frame_Shift_Del	G	-	p.Q799fs
STAD	TCGA-F1-6874-01	PABPC1L	ENST00000476056.1	chr20	43559161:43559367:43561697:43561826:43564031:43564138,	43561698	43561826	43561750	43561750	Frame_Shift_Del	C	-	p.R456fs
STAD	TCGA-F1-6874-01	PABPC1L	ENST00000537323.1	chr20	43559161:43559367:43561712:43561826:43564031:43564138,	43561713	43561826	43561750	43561750	Frame_Shift_Del	C	-	p.R456fs
STAD	TCGA-F1-6874-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15410454:15410596:15452236:15452406:15468772:15468949,	15452237	15452406	15452325	15452325	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-F1-6874-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108042926	108042927	Frame_Shift_Ins	-	T	p.G929fs
STAD	TCGA-F1-6874-01	MMP9	ENST00000372330.3	chr20	44640775:44640952:44641065:44641221:44641893:44642022,	44641066	44641221	44641176	44641176	Frame_Shift_Del	C	-	p.G428fs
STAD	TCGA-F1-6874-01	C5	ENST00000223642.1	chr9	123751845:123752058:123753468:123753558:123758517:123758578,	123753469	123753558	123753470	123753470	Frame_Shift_Del	T	-	p.G981fs
STAD	TCGA-F1-6874-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30740286:30740552:30740690:30740893:30744600:30744770,	30740691	30740893	30740725	30740725	Frame_Shift_Del	C	-	p.P1986fs
STAD	TCGA-F1-6874-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812316	31812317	Frame_Shift_Ins	-	G	p.P389fs
STAD	TCGA-F1-6874-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514338	75514338	Frame_Shift_Del	T	-	p.N674fs
STAD	TCGA-F1-6874-01	TJP3	ENST00000589378.1,ENST00000539908.2,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9	chr19	3738552:3738661:3738894:3739132:3740549:3740761,	3738895	3739132	3738930	3738933	Frame_Shift_Del	TCCT	-	p.485_486del
STAD	TCGA-F1-6874-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46295003:46295232:46300941:46301137:46305237:46305367,	46300942	46301137	46300955	46300955	Frame_Shift_Del	T	-	p.L522fs
STAD	TCGA-F1-6874-01	C1orf54	ENST00000369099.3,ENST00000369102.1,ENST00000369098.3	chr1	150245201:150245266:150246489:150246573:150248149:150248208,	150246490	150246573	150246562	150246562	Frame_Shift_Del	C	-	p.T40fs
STAD	TCGA-F1-6874-01	STK11IP	ENST00000495941.1,ENST00000295641.10,ENST00000447191.1,ENST00000413891.1,ENST00000456909.1	chr2	220478637:220478652:220478882:220478964:220479197:220479268,	220478883	220478964	220478946	220478946	Frame_Shift_Del	C	-	p.T938fs
STAD	TCGA-F1-6874-01	RABGGTB	ENST00000471759.1,ENST00000319942.3,ENST00000535300.1,ENST00000496055.1	chr1	76257865:76257991:76259768:76259918:76260194:76260350,	76259769	76259918	76259888	76259888	Frame_Shift_Del	G	-	p.T275fs
STAD	TCGA-F1-6874-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300216	101300216	Frame_Shift_Del	T	-	p.R63fs
STAD	TCGA-F1-6874-01	PROS1	ENST00000394236.3,ENST00000407433.1	chr3	93603571:93603740:93605179:93605347:93611776:93611966,	93605180	93605347	93605261	93605261	Frame_Shift_Del	A	-	p.K415fs
STAD	TCGA-F1-6874-01	TNS4	ENST00000254051.6	chr17	38644797:38645221:38652238:38652772:38657785:38657849,	38652239	38652772	38652589	38652595	Frame_Shift_Del	GGGTGCA	-	p.28_30del
STAD	TCGA-F1-6874-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533230	94533230	Frame_Shift_Del	G	-	p.G291fs
STAD	TCGA-F1-6874-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000476530.1,ENST00000368993.2	chr1	150686560:150686597:150687090:150687154:150689613:150689758,	150687091	150687154	150687103	150687104	Frame_Shift_Del	TG	-	p.77_77del
STAD	TCGA-F1-6874-01	MDC1	ENST00000376406.3	chr6	30675160:30675231:30675342:30676134:30679188:30679281,	30675343	30676134	30675439	30675439	Frame_Shift_Del	C	-	p.A973fs
STAD	TCGA-F1-6874-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3794861:3794969:3797111:3797251:3800102:3800279,	3797112	3797251	3797186	3797187	Frame_Shift_Ins	-	A	p.G141fs
STAD	TCGA-F1-6874-01	USP2	ENST00000260187.2	chr11	119230893:119230944:119243416:119244231:119252182:119252421,	119243417	119244231	119243680	119243681	Frame_Shift_Ins	-	G	p.M171fs
STAD	TCGA-F1-6874-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760864	93760865	Frame_Shift_Ins	-	A	p.K168_T169delinsX
STAD	TCGA-F1-6874-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629352	6629353	Frame_Shift_Ins	-	G	p.R56fs
STAD	TCGA-F1-6874-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561667	210561667	Frame_Shift_Del	A	-	p.A1471fs
STAD	TCGA-F1-6874-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000356696.3,ENST00000533034.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49178268:49178359:49179503:49179595:49186256:49186324,	49179504	49179595	49179535	49179535	Frame_Shift_Del	T	-	p.S501fs
STAD	TCGA-F1-6874-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
STAD	TCGA-F1-6874-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
STAD	TCGA-F1-6874-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072555	60072555	Frame_Shift_Del	T	-	p.D714fs
STAD	TCGA-F1-6874-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547795	165547795	Frame_Shift_Del	T	-	p.T343fs
STAD	TCGA-F1-6874-01	TMEM45A	ENST00000449609.1,ENST00000462884.1,ENST00000403410.1	chr3	100238376:100238452:100274052:100274245:100275603:100275666,	100274053	100274245	100274057	100274058	Frame_Shift_Ins	-	G	p.M1fs
STAD	TCGA-F1-6874-01	MLH1	ENST00000435176.1,ENST00000457004.1,ENST00000458205.2,ENST00000432299.1,ENST00000456676.2,ENST00000442249.1,ENST00000454028.1,ENST00000536378.1,ENST00000485889.1,ENST00000231790.2,ENST00000455445.2,ENST00000492474.1	chr3	37048481:37048554:37050304:37050396:37053310:37053327,	37050305	37050396	37050312	37050331	Frame_Shift_Del	ACCTTTTTTACAACATAGCC	-	p.154_160del
STAD	TCGA-BR-8286-01	PDE2A	ENST00000543750.1,ENST00000334456.5,ENST00000540345.1,ENST00000539367.1,ENST00000444035.2,ENST00000544570.1,ENST00000538749.1	chr11	72302392:72302400:72307636:72307692:72308553:72308663,	72307637	72307692	72307656	72307657	Frame_Shift_Ins	-	C	p.A157fs
STAD	TCGA-BR-4267-01	PRUNE2	ENST00000376713.3,ENST00000492157.1,ENST00000428286.1,ENST00000376718.3	chr9	79441495:79441648:79461430:79461594:79465378:79465581,	79461431	79461594	79461440	79461458	Frame_Shift_Del	GATGAGCCAGTTGCTCGGT	-	p.161_167del
STAD	TCGA-D7-8573-01	CCPG1	ENST00000425574.3,ENST00000310958.6,ENST00000442196.3,ENST00000569205.1,ENST00000568372.1	chr15	55653037:55653142:55657385:55657507:55663990:55664228,	55657386	55657507	55657471	55657474	Frame_Shift_Del	CTGA	-	p.247_248del
STAD	TCGA-D7-A4YY-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629292	6629293	Frame_Shift_Ins	-	C	p.S36fs
STAD	TCGA-D7-A4YY-01	MZF1	ENST00000599369.1,ENST00000594234.1,ENST00000215057.2,ENST00000594108.1	chr19	59080882:59080953:59081710:59081894:59082360:59082796,	59081711	59081894	59081816	59081817	Frame_Shift_Del	CA	-	p.159_159del
STAD	TCGA-D7-A4YY-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381418	109381419	Frame_Shift_Ins	-	T	p.V1475fs
STAD	TCGA-D7-A4YY-01	ELOVL2	ENST00000354666.3	chr6	10990550:10990675:10995239:10995411:11000319:11000397,	10995240	10995411	10995330	10995330	Frame_Shift_Del	T	-	p.T139fs
STAD	TCGA-D7-A4YY-01	BAG6	ENST00000375976.4,ENST00000404765.2,ENST00000375964.6,ENST00000211379.5,ENST00000441793.1,ENST00000439687.2,ENST00000362049.6	chr6	31608421:31608481:31608568:31608715:31608880:31609005,	31608569	31608715	31608571	31608571	Frame_Shift_Del	G	-	p.Q948fs
STAD	TCGA-D7-A4YY-01	TBC1D9	ENST00000442267.2	chr4	141590787:141590958:141591873:141592080:141598047:141598255,	141591874	141592080	141592064	141592064	Frame_Shift_Del	T	-	p.K359fs
STAD	TCGA-D7-A4YY-01	DOCK6	ENST00000294618.7	chr19	11354477:11354558:11356238:11356388:11356487:11356554,	11356239	11356388	11356341	11356341	Frame_Shift_Del	C	-	p.L308fs
STAD	TCGA-D7-A4YY-01	KIAA1211L	ENST00000462314.1	chr2	99443450:99443632:99448810:99448975:99454581:99454750,	99448811	99448975	99448925	99448925	Frame_Shift_Del	C	-	p.L143fs
STAD	TCGA-D7-A4YY-01	JAZF1	ENST00000430432.1,ENST00000283928.5,ENST00000447620.1	chr7	27880387:27880486:27934838:27935035:28031527:28031600,	27934839	27935035	27934891	27934891	Frame_Shift_Del	G	-	p.V112X
STAD	TCGA-D7-A4YY-01	GNPTAB	ENST00000299314.7,ENST00000549940.1	chr12	102174334:102174399:102179789:102179995:102182325:102182367,	102179790	102179995	102179837	102179837	Frame_Shift_Del	T	-	p.N175fs
STAD	TCGA-D7-A4YY-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903413	5903414	Frame_Shift_Ins	-	A	p.I208fs
STAD	TCGA-D7-A4YY-01	NLRP7	ENST00000590030.1,ENST00000446217.1,ENST00000588756.1,ENST00000586379.1,ENST00000592784.1,ENST00000340844.2	chr19	55449411:55449609:55450255:55451834:55452298:55452373,	55450256	55451834	55451098	55451098	Frame_Shift_Del	G	-	p.A364fs
STAD	TCGA-D7-A4YY-01	CSGALNACT2	ENST00000374464.1	chr10	43633933:43634015:43650344:43651258:43654162:43654379,	43650345	43651258	43650701	43650701	Frame_Shift_Del	C	-	p.A35fs
STAD	TCGA-D7-A4YY-01	ITSN1	ENST00000381291.4,ENST00000440794.1,ENST00000399355.2,ENST00000381318.3	chr21	35172226:35172233:35174733:35174748:35183278:35183526,	35174734	35174748	35174739	35174740	Frame_Shift_Ins	-	G	p.K770fs
STAD	TCGA-D7-A4YY-01	MTMR3	ENST00000401950.2,ENST00000333027.3,ENST00000406629.1,ENST00000351488.3,ENST00000323630.5	chr22	30412516:30412687:30413915:30414061:30415468:30415640,	30413916	30414061	30414048	30414048	Frame_Shift_Del	C	-	p.D602fs
STAD	TCGA-D7-A4YY-01	ENDOU	ENST00000229003.3,ENST00000422538.3,ENST00000545824.2	chr12	48105415:48105558:48106298:48106405:48107057:48107171,	48106299	48106405	48106392	48106392	Frame_Shift_Del	T	-	p.G294fs
STAD	TCGA-D7-A4YY-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38302550:38302733:38308748:38309692:38311131:38311294,	38308749	38309692	38308767	38308768	Frame_Shift_Ins	-	C	p.G326fs
STAD	TCGA-D7-A4YY-01	MTMR14	ENST00000296003.4	chr3	9730627:9730766:9739394:9739550:9743473:9743608,9731647:9731827:9739394:9739550:9743473:9743608,	9739395	9739550	9739422	9739423	Frame_Shift_Del	CT	-	p.547_547del
STAD	TCGA-D7-A4YY-01	MB	ENST00000419229.1	chr22	36007016:36007153:36013209:36013312:36019237:36019401,36007016:36007153:36013209:36013312:36018524:36018571,36007016:36007153:36013209:36013312:36018012:36018143,	36013210	36013312	36013256	36013257	Frame_Shift_Ins	-	C	p.K17fs
STAD	TCGA-D7-A4YY-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923160	158923160	Frame_Shift_Del	C	-	p.A822fs
STAD	TCGA-D7-A4YY-01	MDK	ENST00000359803.3,ENST00000395566.4,ENST00000533952.1,ENST00000481047.1,ENST00000407067.1,ENST00000395565.1,ENST00000490240.1,ENST00000489525.1,ENST00000405308.2	chr11	46403242:46403308:46403843:46404011:46404136:46404286,46403606:46403683:46403843:46404011:46404136:46404147,	46403844	46404011	46403891	46403892	Frame_Shift_Ins	-	G	p.W42fs
STAD	TCGA-D7-A4YY-01	NCAPD2	ENST00000382457.4,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6630155:6630276:6630963:6631203:6631993:6632168,	6630964	6631203	6631161	6631162	Frame_Shift_Ins	-	T	p.I638fs
STAD	TCGA-D7-A4YY-01	ELF3	ENST00000495848.1,ENST00000367284.5	chr1	201979714:201979948:201980256:201980427:201981084:201981306,201979726:201979834:201980256:201980427:201981084:201981246,	201980257	201980427	201980293	201980293	Frame_Shift_Del	T	-	p.I10fs
STAD	TCGA-D7-A4YY-01	ELF3	ENST00000446188.1	chr1	201979726:201979834:201980256:201980421:201981084:201981246,	201980257	201980421	201980293	201980293	Frame_Shift_Del	T	-	p.I10fs
STAD	TCGA-D7-A4YY-01	ANKS6	ENST00000375019.2,ENST00000375018.1,ENST00000540940.1,ENST00000353234.4	chr9	101542470:101542619:101544748:101544855:101546234:101546439,	101544749	101544855	101544793	101544793	Frame_Shift_Del	T	-	p.N392fs
STAD	TCGA-D7-A4YY-01	CWF19L2	ENST00000532251.1,ENST00000282251.5	chr11	107205606:107205687:107207283:107207439:107219662:107219779,	107207284	107207439	107207380	107207381	Frame_Shift_Ins	-	A	p.L754fs
STAD	TCGA-HU-A4H4-01	PSAP	ENST00000394934.1,ENST00000394936.3	chr10	73578787:73578868:73579221:73579379:73579470:73579657,	73579222	73579379	73579295	73579295	Frame_Shift_Del	T	-	p.N429fs
STAD	TCGA-HU-A4H4-01	PACRGL	ENST00000503747.1,ENST00000508952.1	chr4	20706282:20706437:20714410:20714545:20715054:20715084,20711305:20711396:20714410:20714545:20715054:20715084,20709425:20709493:20714410:20714545:20715054:20715084,	20714411	20714545	20714416	20714417	Frame_Shift_Del	GA	-	p.124_124del
STAD	TCGA-HU-A4H4-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410381	19410381	Frame_Shift_Del	A	-	p.S149X
STAD	TCGA-HU-A4H4-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52678719:52678805:52682359:52682458:52685757:52685826,	52682360	52682458	52682399	52682400	Frame_Shift_Ins	-	T	p.N258fs
STAD	TCGA-HU-A4H4-01	UBXN11	ENST00000494942.1,ENST00000374222.1,ENST00000475591.1,ENST00000374217.2,ENST00000472155.1,ENST00000314675.7,ENST00000374221.3,ENST00000357089.4,ENST00000374223.1	chr1	26609354:26609428:26610632:26610736:26610852:26610952,	26610633	26610736	26610655	26610655	Frame_Shift_Del	C	-	p.G352fs
STAD	TCGA-HU-A4H4-01	UBXN11	ENST00000496466.1	chr1	26609354:26609428:26610632:26610772:26610852:26610952,	26610633	26610772	26610655	26610655	Frame_Shift_Del	C	-	p.G352fs
STAD	TCGA-HU-A4H4-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729453	19729453	Frame_Shift_Del	T	-	p.S279fs
STAD	TCGA-HU-A4H4-01	KIAA1841	ENST00000453873.1,ENST00000482513.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61308586:61308645:61310288:61310449:61315293:61315380,	61310289	61310449	61310316	61310316	Frame_Shift_Del	A	-	p.H252fs
STAD	TCGA-HU-A4H4-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557835	210557836	Frame_Shift_Ins	-	A	p.P314fs
STAD	TCGA-HU-A4H4-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557835	210557836	Frame_Shift_Ins	-	A	p.P314fs
STAD	TCGA-HU-A4H4-01	SON	ENST00000356577.4,ENST00000300278.4,ENST00000455528.1,ENST00000381679.4,ENST00000290239.6	chr21	34918524:34918685:34921781:34927697:34929461:34929622,	34921782	34927697	34921914	34921914	Frame_Shift_Del	A	-	p.E126fs
STAD	TCGA-HU-A4H4-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097622	27097622	Frame_Shift_Del	A	-	p.N1070fs
STAD	TCGA-HU-A4H4-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125058007:125058142:125061847:125061997:125072420:125072531,	125061848	125061997	125061917	125061917	Frame_Shift_Del	C	-	p.E931fs
STAD	TCGA-HU-A4H4-01	FANCI	ENST00000566895.1	chr15	89824400:89824531:89824995:89826481:89828326:89828449,	89824996	89826481	89826401	89826401	Frame_Shift_Del	T	-	p.G539fs
STAD	TCGA-HU-A4H4-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753558	241753558	Frame_Shift_Del	A	-	p.Q418fs
STAD	TCGA-HU-A4H4-01	TEAD3	ENST00000402886.3,ENST00000433586.1,ENST00000338863.7	chr6	35443459:35443483:35443695:35443869:35444078:35444212,	35443696	35443869	35443724	35443724	Frame_Shift_Del	G	-	p.P291fs
STAD	TCGA-HU-A4H4-01	CDK5RAP1	ENST00000482967.1	chr20	31958304:31958435:31960447:31960503:31961920:31962018,31958304:31958435:31960447:31960503:31989233:31989258,	31960448	31960503	31960473	31960476	Frame_Shift_Del	AACT	-	p.412_413del
STAD	TCGA-HU-A4H4-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121228	12121228	Frame_Shift_Del	A	-	p.P400fs
STAD	TCGA-HU-A4H4-01	ZNF521	ENST00000577801.1,ENST00000399425.2,ENST00000580488.1,ENST00000538137.2,ENST00000361524.3	chr18	22807583:22807661:22901971:22902151:22930870:22930911,	22901972	22902151	22902077	22902077	Frame_Shift_Del	C	-	p.E39fs
STAD	TCGA-HU-A4H4-01	PUM2	ENST00000361078.2,ENST00000429419.2,ENST00000403432.1,ENST00000442400.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20508250:20508345:20511254:20511424:20511996:20512017,	20511255	20511424	20511377	20511377	Frame_Shift_Del	T	-	p.G133fs
STAD	TCGA-D7-5578-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000492275.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000463216.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38480691:38480746:38494116:38494279:38495282:38495328,	38494117	38494279	38494204	38494204	Frame_Shift_Del	A	-	p.C329X
STAD	TCGA-BR-7196-01	SIK3	ENST00000375300.1,ENST00000375288.1,ENST00000542607.1,ENST00000497049.1,ENST00000413553.1,ENST00000292055.4,ENST00000445177.1,ENST00000446921.2	chr11	116767908:116768033:116797934:116798096:116824759:116824823,	116797935	116798096	116798045	116798045	Frame_Shift_Del	A	-	p.F111fs
STAD	TCGA-CD-A486-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93247438:93247535:93250956:93251064,	93247439	93247535	93247480	93247481	Frame_Shift_Ins	-	A	p.A379fs
STAD	TCGA-CD-A486-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30492600	30492603	Frame_Shift_Del	GCAC	-	p.144_145del
STAD	TCGA-BR-8361-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071072	197071073	Frame_Shift_Ins	-	A	p.V2437fs
STAD	TCGA-BR-8361-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986250	2986251	Frame_Shift_Ins	-	A	p.G21fs
STAD	TCGA-BR-8361-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878042	Frame_Shift_Del	TT	-	p.81_81del
STAD	TCGA-BR-8361-01	SLC22A10	ENST00000332793.6	chr11	63066985:63067101:63069800:63070015:63071579:63071688,	63069801	63070015	63070011	63070012	Frame_Shift_Ins	-	A	p.P427fs
STAD	TCGA-BR-8361-01	NUP107	ENST00000538993.1,ENST00000229179.4,ENST00000539906.1	chr12	69125386:69125499:69126416:69126519:69127231:69127305,	69126417	69126519	69126428	69126428	Frame_Shift_Del	A	-	p.L670X
STAD	TCGA-BR-8361-01	KIAA0100	ENST00000528896.2,ENST00000544884.1	chr17	26943684:26943771:26943906:26944017:26944249:26944336,	26943907	26944017	26943932	26943932	Frame_Shift_Del	C	-	p.G1999fs
STAD	TCGA-BR-8361-01	GLCE	ENST00000261858.2	chr15	69502654:69502745:69548132:69548731:69553425:69553668,	69548133	69548731	69548303	69548303	Frame_Shift_Del	A	-	p.E53fs
STAD	TCGA-BR-8361-01	FRMD5	ENST00000402883.1	chr15	44162964:44165420:44166316:44166660:44175900:44176007,	44166317	44166660	44166366	44166366	Frame_Shift_Del	C	-	p.G477fs
STAD	TCGA-BR-8361-01	ERLEC1	ENST00000378239.5,ENST00000185150.4	chr2	54041679:54041757:54041996:54042072:54045034:54045357,	54041997	54042072	54042070	54042070	Frame_Shift_Del	G	-	p.L459fs
STAD	TCGA-BR-8361-01	C2orf42	ENST00000264434.2,ENST00000420306.1	chr2	70396688:70396793:70402804:70402909:70406663:70406774,	70402805	70402909	70402837	70402837	Frame_Shift_Del	T	-	p.K336fs
STAD	TCGA-BR-8361-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000504194.1,ENST00000382788.3,ENST00000338806.4	chr4	3429825:3429896:3430284:3430438:3432133:3432174,	3430285	3430438	3430399	3430400	Frame_Shift_Del	AA	-	p.1175_1176del
STAD	TCGA-BR-8361-01	ZNF451	ENST00000491832.2,ENST00000370706.4	chr6	57011887:57013491:57015516:57015660:57017018:57017149,	57015517	57015660	57015648	57015649	Frame_Shift_Ins	-	G	p.W914fs
STAD	TCGA-BR-8361-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320657	46320658	Frame_Shift_Ins	-	G	p.S943fs
STAD	TCGA-BR-8361-01	PPP1R10	ENST00000376511.2	chr6	30568176:30569435:30569712:30570468:30570622:30570736,	30569713	30570468	30570045	30570045	Frame_Shift_Del	C	-	p.G794fs
STAD	TCGA-BR-8361-01	DHX38	ENST00000268482.3,ENST00000569935.1	chr16	72136999:72137110:72137500:72137687:72137844:72138030,	72137501	72137687	72137666	72137666	Frame_Shift_Del	G	-	p.M601fs
STAD	TCGA-BR-8361-01	PHF20L1	ENST00000485595.1,ENST00000337920.4	chr8	133787874:133787891:133790041:133790157:133806655:133806827,	133790042	133790157	133790151	133790151	Frame_Shift_Del	A	-	p.Q26fs
STAD	TCGA-BR-8361-01	PHF20L1	ENST00000220847.7,ENST00000395376.1,ENST00000315808.10,ENST00000395379.1,ENST00000361997.5,ENST00000395386.2	chr8	133787874:133787891:133790037:133790157:133806655:133806827,	133790038	133790157	133790151	133790151	Frame_Shift_Del	A	-	p.Q26fs
STAD	TCGA-BR-8361-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998128	169998128	Frame_Shift_Del	A	-	p.L273X
STAD	TCGA-BR-8361-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131568	Frame_Shift_Del	AA	-	p.170_170del
STAD	TCGA-BR-8361-01	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507766	18507766	Frame_Shift_Del	C	-	p.G3fs
STAD	TCGA-BR-8361-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593495	48593496	Frame_Shift_Del	AG	-	p.415_416del
STAD	TCGA-BR-8361-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48080764	48080764	Frame_Shift_Del	T	-	p.E283fs
STAD	TCGA-BR-8361-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158042	50158043	Frame_Shift_Del	CC	-	p.1178_1178del
STAD	TCGA-BR-8361-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347093	347093	Frame_Shift_Del	C	-	p.E640fs
STAD	TCGA-BR-8361-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448298	Frame_Shift_Del	G	-	p.R117fs
STAD	TCGA-BR-8361-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743303	130743303	Frame_Shift_Del	T	-	p.K283fs
STAD	TCGA-BR-8361-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.285_285del
STAD	TCGA-BR-8361-01	NEU1	ENST00000375631.4,ENST00000480384.1,ENST00000491768.1	chr6	31828215:31828398:31828964:31829227:31829775:31829968,	31828965	31829227	31829118	31829119	Frame_Shift_Ins	-	A	p.F154fs
STAD	TCGA-BR-8361-01	DZANK1	ENST00000487128.1,ENST00000358866.6,ENST00000377630.5,ENST00000262547.5,ENST00000329494.5,ENST00000609267.1,ENST00000357236.4,ENST00000608192.1,ENST00000460891.1	chr20	18394991:18395156:18395970:18396093:18407710:18407803,	18395971	18396093	18396042	18396043	Frame_Shift_Ins	-	C	p.T336fs
STAD	TCGA-BR-8361-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906352	Frame_Shift_Del	TT	-	p.115_116del
STAD	TCGA-BR-8361-01	SH3GL3	ENST00000427482.2,ENST00000324537.5,ENST00000563901.1,ENST00000535412.1,ENST00000434347.1	chr15	84237287:84237424:84241316:84241450:84245334:84245493,	84241317	84241450	84241366	84241367	Frame_Shift_Ins	-	A	p.V127fs
STAD	TCGA-BR-8361-01	ECM1	ENST00000369049.4,ENST00000369047.4	chr1	150483351:150483674:150483932:150484307:150484827:150485048,	150483933	150484307	150484010	150484010	Frame_Shift_Del	G	-	p.Q289fs
STAD	TCGA-BR-8361-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254818	9254819	Frame_Shift_Ins	-	G	p.E518fs
STAD	TCGA-BR-8361-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000478340.1,ENST00000467020.1,ENST00000464112.1	chr6	35437212:35437306:35437955:35438128:35438356:35438417,	35437956	35438128	35438059	35438060	Frame_Shift_Del	CA	-	p.138_138del
STAD	TCGA-BR-8361-01	CAMSAP2	ENST00000358823.2,ENST00000236925.4,ENST00000413307.2	chr1	200729966:200730226:200776503:200776665:200784688:200784772,	200776504	200776665	200776602	200776602	Frame_Shift_Del	T	-	p.A166fs
STAD	TCGA-BR-8361-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349356	89349356	Frame_Shift_Del	T	-	p.E1199fs
STAD	TCGA-BR-8361-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554712.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53360093:53360145:53385840:53386074:53417129:53417286,	53385841	53386074	53386063	53386064	Frame_Shift_Ins	-	T	p.D57fs
STAD	TCGA-BR-8361-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048868	42048868	Frame_Shift_Del	G	-	p.P534fs
STAD	TCGA-BR-8361-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088682	27088682	Frame_Shift_Del	C	-	p.S764fs
STAD	TCGA-BR-8361-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.W386fs
STAD	TCGA-BR-8361-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577144	29577144	Frame_Shift_Del	G	-	p.P574fs
STAD	TCGA-BR-8361-01	NTNG1	ENST00000370074.4	chr1	107937775:107937948:107950303:107950330:108023232:108023462,	107950304	107950330	107950324	107950325	Frame_Shift_Ins	-	T	p.I361fs
STAD	TCGA-BR-8361-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044068	108044069	Frame_Shift_Ins	-	T	p.S548fs
STAD	TCGA-BR-8361-01	POFUT2	ENST00000349485.5,ENST00000331343.7,ENST00000334538.9	chr21	46702283:46702313:46703297:46703442:46705592:46705606,46702263:46702374:46703297:46703442:46705592:46705606,	46703298	46703442	46703387	46703387	Frame_Shift_Del	C	-	p.W147fs
STAD	TCGA-BR-8361-01	PLD1	ENST00000340989.4,ENST00000351298.4,ENST00000475273.2,ENST00000356327.5,ENST00000440204.1,ENST00000342215.6,ENST00000498278.1	chr3	171443807:171443866:171451233:171451299:171452654:171452760,	171451234	171451299	171451263	171451263	Frame_Shift_Del	T	-	p.M193fs
STAD	TCGA-BR-8361-01	TUBE1	ENST00000604743.1,ENST00000368662.5,ENST00000604814.1	chr6	112395912:112396053:112397139:112397315:112397524:112397677,	112397140	112397315	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
STAD	TCGA-BR-8361-01	TUBE1	ENST00000605457.1	chr6	112395912:112396053:112397139:112397374:112397524:112397677,	112397140	112397374	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
STAD	TCGA-BR-8361-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257786	Frame_Shift_Del	TT	-	p.15_15del
STAD	TCGA-BR-8361-01	NOTCH4	ENST00000375023.3,ENST00000473562.1	chr6	32187905:32188061:32188181:32188418:32188532:32188655,	32188182	32188418	32188297	32188297	Frame_Shift_Del	G	-	p.G349fs
STAD	TCGA-BR-8361-01	RHOT2	ENST00000602564.1,ENST00000567017.1,ENST00000569358.1,ENST00000563637.1,ENST00000568950.1,ENST00000562333.1,ENST00000565004.1,ENST00000569675.1,ENST00000568636.1,ENST00000315082.4	chr16	721114:721203:721696:721781:721859:721933,	721697	721781	721707	721707	Frame_Shift_Del	C	-	p.V293fs
STAD	TCGA-BR-8361-01	BCL9L	ENST00000526143.1	chr11	118778191:118778311:118778978:118779364:118795946:118796317,	118778979	118779364	118779296	118779296	Frame_Shift_Del	G	-	p.P32fs
STAD	TCGA-BR-8361-01	FANCA	ENST00000389301.3,ENST00000568369.1	chr16	89828356:89828430:89831297:89831474:89833548:89833555,	89831298	89831474	89831345	89831346	Frame_Shift_Del	AG	-	p.911_911del
STAD	TCGA-BR-8361-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431520	36431521	Frame_Shift_Ins	-	C	p.D398fs
STAD	TCGA-BR-8361-01	CRIM1	ENST00000280527.2	chr2	36744469:36744685:36749234:36749456:36764494:36764689,	36749235	36749456	36749409	36749409	Frame_Shift_Del	G	-	p.C794fs
STAD	TCGA-BR-8361-01	RAB14	ENST00000373840.4,ENST00000451303.1	chr9	123949230:123949297:123952831:123953009:123954448:123954502,	123952832	123953009	123952938	123952938	Frame_Shift_Del	T	-	p.I60fs
STAD	TCGA-BR-8361-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31602248:31602334:31602529:31602754:31602908:31603049,	31602530	31602754	31602641	31602641	Frame_Shift_Del	C	-	p.G1682fs
STAD	TCGA-BR-8361-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696453	Frame_Shift_Del	GG	-	p.1005_1005del
STAD	TCGA-BR-8361-01	C1orf21	ENST00000367514.3,ENST00000235307.6	chr1	184559881:184559949:184567534:184567595:184588651:184589070,	184567535	184567595	184567582	184567582	Frame_Shift_Del	A	-	p.E105fs
STAD	TCGA-BR-8361-01	PPP1R1B	ENST00000254079.4,ENST00000394265.1,ENST00000580772.1,ENST00000580825.1,ENST00000394267.2,ENST00000582680.1	chr17	37785422:37785483:37785792:37785815:37786224:37786300,	37785793	37785815	37785805	37785805	Frame_Shift_Del	C	-	p.S52fs
STAD	TCGA-BR-8361-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862306	50862306	Frame_Shift_Del	C	-	p.V333fs
STAD	TCGA-BR-8361-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000507620.1	chr3	142215975:142216034:142217438:142217616:142218468:142218560,	142217439	142217616	142217557	142217557	Frame_Shift_Del	T	-	p.R1814fs
STAD	TCGA-BR-8361-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405969	157405970	Frame_Shift_Del	CT	-	p.737_737del
STAD	TCGA-BR-8361-01	QRSL1	ENST00000369044.1	chr6	107077488:107077580:107088223:107088383:107088697:107088737,	107088224	107088383	107088273	107088273	Frame_Shift_Del	A	-	p.Q25fs
STAD	TCGA-BR-8361-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646085	215646085	Frame_Shift_Del	T	-	p.D172fs
STAD	TCGA-BR-8361-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44903037:44903183:44905627:44905734:44907560:44907764,	44905628	44905734	44905697	44905698	Frame_Shift_Ins	-	T	p.E1026fs
STAD	TCGA-BR-8361-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196544941	196544942	Frame_Shift_Ins	-	A	p.E59fs
STAD	TCGA-BR-8361-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21736534	21736534	Frame_Shift_Del	A	-	p.S356fs
STAD	TCGA-BR-8361-01	CCDC178	ENST00000583930.1,ENST00000406524.2,ENST00000383096.3,ENST00000402325.1,ENST00000579947.1,ENST00000300227.8,ENST00000403303.1	chr18	30847165:30847261:30873122:30873276:30903454:30903597,	30873123	30873276	30873148	30873148	Frame_Shift_Del	T	-	p.N384fs
STAD	TCGA-BR-8361-01	NEU3	ENST00000531619.1	chr11	74700062:74700199:74705553:74705765:74716457:74716514,74700062:74700199:74705553:74705765:74715349:74715450,	74705554	74705765	74705655	74705655	Frame_Shift_Del	C	-	p.I65fs
STAD	TCGA-BR-8361-01	CHN2	ENST00000424025.2,ENST00000412711.2,ENST00000421775.2,ENST00000410098.1,ENST00000539389.1,ENST00000409041.4,ENST00000495789.2,ENST00000539406.1,ENST00000222792.6,ENST00000433720.1,ENST00000546235.1	chr7	29544410:29544437:29546843:29546981:29548916:29549022,	29546844	29546981	29546850	29546850	Frame_Shift_Del	A	-	p.E333fs
STAD	TCGA-BR-8361-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72152078:72152348:72165697:72165844:72169097:72169222,	72165698	72165844	72165808	72165809	Frame_Shift_Ins	-	G	p.V1162fs
STAD	TCGA-BR-8361-01	PPP1R12B	ENST00000491336.1,ENST00000608999.1,ENST00000391959.3,ENST00000367270.4,ENST00000498070.1,ENST00000290419.5,ENST00000336894.4	chr1	202457660:202457751:202462241:202462445:202464420:202464610,	202462242	202462445	202462365	202462365	Frame_Shift_Del	G	-	p.P688fs
STAD	TCGA-BR-8361-01	APBA1	ENST00000265381.4	chr9	72064499:72064712:72067037:72067217:72071162:72071348,	72067038	72067217	72067044	72067045	Frame_Shift_Del	AC	-	p.654_655del
STAD	TCGA-BR-8361-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-BR-8361-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
STAD	TCGA-BR-8682-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25777898:25777982:25780697:25780825:25783863:25784040,	25780698	25780825	25780725	25780725	Frame_Shift_Del	A	-	p.F853fs
STAD	TCGA-D7-6818-01	SPTBN2	ENST00000529997.1,ENST00000309996.2,ENST00000533211.1	chr11	66466876:66467079:66467996:66468753:66469054:66469192,	66467997	66468753	66468026	66468026	Frame_Shift_Del	G	-	p.R1182fs
STAD	TCGA-D7-6818-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365106	37365107	Frame_Shift_Ins	-	A	p.E599fs
STAD	TCGA-D7-6818-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577090	7577096	Frame_Shift_Del	CGCCGGT	-	p.281_283del
STAD	TCGA-CD-A4MG-01	MTSS1	ENST00000431961.2,ENST00000354184.4	chr8	125568053:125568145:125568472:125568595:125575022:125575230,	125568473	125568595	125568558	125568558	Frame_Shift_Del	C	-	p.G440fs
STAD	TCGA-CD-A4MG-01	MTSS1	ENST00000524090.1,ENST00000325064.5,ENST00000520094.1,ENST00000523587.1,ENST00000519168.1,ENST00000518547.1,ENST00000395508.2	chr8	125568053:125568145:125568472:125568646:125575022:125575230,125568053:125568145:125568472:125568646:125569921:125570116,	125568473	125568646	125568558	125568558	Frame_Shift_Del	C	-	p.G440fs
STAD	TCGA-CD-A4MG-01	NTHL1	ENST00000566380.1	chr16	2093567:2093727:2096128:2096367:2097709:2097744,	2096129	2096367	2096133	2096133	Frame_Shift_Del	G	-	p.P125fs
STAD	TCGA-CD-A4MG-01	U2AF2	ENST00000308924.4,ENST00000450554.2	chr19	56172403:56172555:56173867:56173984:56174971:56175110,	56173868	56173984	56173906	56173906	Frame_Shift_Del	G	-	p.L175fs
STAD	TCGA-CD-A4MG-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.T118fs
STAD	TCGA-CD-A4MG-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189625	75189626	Frame_Shift_Ins	-	A	p.I156fs
STAD	TCGA-CD-A4MG-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046886	17046886	Frame_Shift_Del	C	-	p.A351fs
STAD	TCGA-CD-A4MG-01	KIF1B	ENST00000377086.1,ENST00000465635.1,ENST00000377081.1,ENST00000483340.1,ENST00000263934.6	chr1	10405902:10406011:10407818:10407885:10408706:10408791,	10407819	10407885	10407870	10407871	Frame_Shift_Ins	-	T	p.T1237fs
STAD	TCGA-CD-A4MG-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77474065	77474065	Frame_Shift_Del	T	-	p.P69fs
STAD	TCGA-CD-A4MG-01	ENTPD6	ENST00000435520.1	chr20	25176474:25176503:25187157:25187226:25187711:25187880,25176371:25176503:25187157:25187226:25187714:25187880,25177740:25177862:25187157:25187226:25187714:25188033,	25187158	25187226	25187205	25187205	Frame_Shift_Del	A	-	p.R11fs
STAD	TCGA-CD-A4MG-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836079	35836080	Frame_Shift_Ins	-	A	p.C344fs
STAD	TCGA-CD-A4MG-01	ASPSCR1	ENST00000344865.6,ENST00000582355.2,ENST00000306729.7,ENST00000584454.1,ENST00000580534.1,ENST00000306739.4	chr17	79953867:79953941:79954295:79954722:79966912:79966915,	79954296	79954722	79954545	79954545	Frame_Shift_Del	G	-	p.L252fs
STAD	TCGA-CD-A4MG-01	AARS2	ENST00000244571.4	chr6	44267390:44268448:44268892:44269003:44269117:44269157,	44268893	44269003	44268923	44268923	Frame_Shift_Del	C	-	p.K922fs
STAD	TCGA-CD-A4MG-01	AIMP2	ENST00000395236.2	chr7	6054776:6054983:6057444:6057676:6062933:6063326,6048946:6049129:6057444:6057676:6062933:6063326,	6057445	6057676	6057622	6057622	Frame_Shift_Del	A	-	p.N173fs
STAD	TCGA-CD-A4MG-01	BUB1	ENST00000535254.1,ENST00000302759.6	chr2	111398610:111398782:111398883:111399041:111399218:111399266,	111398884	111399041	111399006	111399006	Frame_Shift_Del	T	-	p.V888X
STAD	TCGA-CD-A4MG-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050026	44050026	Frame_Shift_Del	C	-	p.A346fs
STAD	TCGA-CD-A4MG-01	MAP3K11	ENST00000530153.1,ENST00000309100.3,ENST00000532507.1	chr11	65365226:65366099:65366864:65367239:65373231:65373323,	65366865	65367239	65366996	65366996	Frame_Shift_Del	G	-	p.P692fs
STAD	TCGA-CD-A4MG-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826416	129826417	Frame_Shift_Ins	-	A	p.P2873fs
STAD	TCGA-CD-A4MG-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459506	27459507	Frame_Shift_Del	TG	-	p.539_540del
STAD	TCGA-CD-A4MG-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-CD-A4MG-01	NOTCH4	ENST00000375023.3,ENST00000473562.1	chr6	32187905:32188061:32188181:32188418:32188532:32188655,	32188182	32188418	32188294	32188295	Frame_Shift_Ins	-	C	p.G349fs
STAD	TCGA-CD-A4MG-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428501	44428501	Frame_Shift_Del	T	-	p.S54fs
STAD	TCGA-CD-A4MG-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50881788:50881853:50884107:50884823:50885813:50885946,	50884108	50884823	50884195	50884195	Frame_Shift_Del	T	-	p.S1413fs
STAD	TCGA-CD-A4MG-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394096	64394097	Frame_Shift_Ins	-	A	p.T158fs
STAD	TCGA-CD-A4MG-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54537518:54537681:54596826:54596958:54603821:54603882,	54596827	54596958	54596940	54596940	Frame_Shift_Del	T	-	p.G219fs
STAD	TCGA-CD-A4MG-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065770	145065771	Frame_Shift_Del	TG	-	p.126_127del
STAD	TCGA-CD-A4MG-01	TMEM175	ENST00000508204.1,ENST00000509508.1,ENST00000515740.1	chr4	926274:926328:944208:944306:944994:945046,	944209	944306	944297	944298	Frame_Shift_Del	CA	-	p.94_94del
STAD	TCGA-CD-A4MG-01	ALS2CL	ENST00000434140.1	chr3	46721919:46722031:46722735:46722897:46722989:46723063,46721919:46722031:46722735:46722897:46722993:46723088,	46722736	46722897	46722809	46722809	Frame_Shift_Del	G	-	p.Q455fs
STAD	TCGA-CD-A4MG-01	PDGFC	ENST00000504672.1	chr4	157684241:157684358:157688924:157689028:157689113:157689142,	157688925	157689028	157688934	157688934	Frame_Shift_Del	T	-	p.Y305fs
STAD	TCGA-CD-A4MG-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.N865fs
STAD	TCGA-CD-A4MG-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699050	30699050	Frame_Shift_Del	A	-	p.E302fs
STAD	TCGA-CD-A4MG-01	GDF11	ENST00000546799.1	chr12	56137182:56137545:56142369:56142767:56143285:56143667,	56142370	56142767	56142425	56142425	Frame_Shift_Del	C	-	p.S167fs
STAD	TCGA-CD-A4MG-01	RABEPK	ENST00000259460.8	chr9	127975648:127975801:127982817:127982979:127990188:127990338,127969842:127970000:127982817:127982979:127990188:127990338,	127982818	127982979	127982926	127982927	Frame_Shift_Del	GA	-	p.158_158del
STAD	TCGA-CD-A4MG-01	HIPK1	ENST00000369554.2,ENST00000369558.1,ENST00000369561.4,ENST00000340480.4,ENST00000369559.4,ENST00000369555.2,ENST00000426820.2	chr1	114495387:114495511:114497272:114497392:114498184:114498271,	114497273	114497392	114497345	114497345	Frame_Shift_Del	T	-	p.R424fs
STAD	TCGA-CD-A4MG-01	PLOD2	ENST00000282903.5,ENST00000461497.1,ENST00000494950.1	chr3	145794568:145794682:145795648:145795711:145796902:145797044,	145795649	145795711	145795694	145795694	Frame_Shift_Del	T	-	p.D507fs
STAD	TCGA-CD-A4MG-01	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335732	173335733	Frame_Shift_Ins	-	T	p.T225fs
STAD	TCGA-CD-A4MG-01	SCN11A	ENST00000450244.1,ENST00000302328.3,ENST00000456224.3,ENST00000444237.2	chr3	38936023:38936455:38938335:38938716:38941384:38941564,	38938336	38938716	38938481	38938482	Frame_Shift_Ins	-	C	p.D753fs
STAD	TCGA-CD-A4MG-01	MEIS2	ENST00000219869.9,ENST00000560570.1	chr15	37387764:37387815:37390167:37390400:37391655:37391683,	37390168	37390400	37390309	37390309	Frame_Shift_Del	G	-	p.P35fs
STAD	TCGA-CD-A4MG-01	GLB1	ENST00000307377.8,ENST00000399402.3,ENST00000307363.5,ENST00000445488.2	chr3	33038220:33038836:33055547:33055802:33058200:33058332,	33055548	33055802	33055705	33055705	Frame_Shift_Del	C	-	p.G526fs
STAD	TCGA-CD-A4MG-01	KALRN	ENST00000454902.1,ENST00000428018.2,ENST00000393496.1	chr3	124351266:124351550:124352695:124352800:124369654:124369762,	124352696	124352800	124352739	124352740	Frame_Shift_Del	CA	-	p.1835_1835del
STAD	TCGA-CD-A4MG-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788023	Frame_Shift_Del	T	-	p.V1116fs
STAD	TCGA-CD-A4MG-01	TRPM5	ENST00000528453.1,ENST00000533881.1,ENST00000452833.1,ENST00000155858.6	chr11	2426756:2426823:2427248:2427321:2427890:2428023,	2427249	2427321	2427290	2427291	Frame_Shift_Ins	-	C	p.L1095fs
STAD	TCGA-CD-A4MG-01	TRPM5	ENST00000533060.1	chr11	2426756:2426823:2427248:2427345:2427890:2428023,	2427249	2427345	2427290	2427291	Frame_Shift_Ins	-	C	p.L1095fs
STAD	TCGA-CD-A4MG-01	PEX1	ENST00000541751.1,ENST00000496420.1,ENST00000438045.1,ENST00000248633.4,ENST00000484913.1	chr7	92132354:92132509:92134045:92134216:92135561:92135658,	92134046	92134216	92134189	92134190	Frame_Shift_Ins	-	T	p.T643fs
STAD	TCGA-CD-A4MG-01	ZNF445	ENST00000396077.2,ENST00000460529.1,ENST00000425708.2	chr3	44492395:44492454:44492805:44492974:44496612:44497188,	44492806	44492974	44492863	44492863	Frame_Shift_Del	C	-	p.D181fs
STAD	TCGA-CD-A4MG-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351458	169351458	Frame_Shift_Del	A	-	p.Q319fs
STAD	TCGA-CD-A4MG-01	SLC25A17	ENST00000412879.1	chr22	41175081:41175129:41195026:41195087:41215198:41215291,41190517:41190584:41195026:41195087:41215198:41215291,41188535:41188680:41195026:41195087:41215198:41215291,	41195027	41195087	41195058	41195058	Frame_Shift_Del	A	-	p.P29fs
STAD	TCGA-CD-A4MG-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212518	185212518	Frame_Shift_Del	A	-	p.F156fs
STAD	TCGA-CD-A4MG-01	VPS53	ENST00000573028.1,ENST00000437048.2,ENST00000576149.1,ENST00000291074.5,ENST00000446250.2,ENST00000570650.1,ENST00000571805.1	chr17	526772:526914:530413:530556:531327:531471,	530414	530556	530426	530427	Frame_Shift_Ins	-	A	p.C321fs
STAD	TCGA-CD-A4MG-01	PON2	ENST00000491069.1	chr7	95041635:95041789:95045483:95045609:95053826:95053897,	95045484	95045609	95045560	95045560	Frame_Shift_Del	A	-	p.S66fs
STAD	TCGA-CD-A4MG-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000493290.1	chr7	95041635:95041789:95045553:95045609:95053826:95053897,	95045554	95045609	95045560	95045560	Frame_Shift_Del	A	-	p.S66fs
STAD	TCGA-CD-A4MG-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27306611	27306611	Frame_Shift_Del	G	-	p.E724fs
STAD	TCGA-CD-A4MG-01	MCM3AP	ENST00000397708.1,ENST00000486937.1,ENST00000291688.1	chr21	47685234:47685437:47685838:47686080:47686895:47687056,	47685839	47686080	47685951	47685951	Frame_Shift_Del	G	-	p.V974fs
STAD	TCGA-CD-A4MG-01	CA2	ENST00000520127.1	chr8	86377500:86377698:86386552:86386645:86388026:86388089,	86386553	86386645	86386635	86386635	Frame_Shift_Del	T	-	p.I145fs
STAD	TCGA-CD-A4MG-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561448	142561448	Frame_Shift_Del	G	-	p.P53fs
STAD	TCGA-CD-A4MG-01	MED13	ENST00000397786.2	chr17	60072512:60072726:60087910:60088594:60106901:60107012,	60087911	60088594	60087992	60087992	Frame_Shift_Del	A	-	p.L629fs
STAD	TCGA-CD-A4MG-01	CREB5	ENST00000409603.1,ENST00000396298.2,ENST00000396299.2,ENST00000396300.2,ENST00000357727.2	chr7	28843815:28844139:28848803:28849031:28857687:28857796,	28848804	28849031	28848864	28848864	Frame_Shift_Del	G	-	p.T362fs
STAD	TCGA-CD-A4MG-01	PSPC1	ENST00000492741.1,ENST00000471658.1	chr13	20251863:20251963:20304378:20304484:20315704:20315789,	20304379	20304484	20304380	20304380	Frame_Shift_Del	T	-	p.N386fs
STAD	TCGA-CD-A4MG-01	RBBP7	ENST00000380084.4,ENST00000416035.1,ENST00000380087.2	chrX	16875716:16875832:16876798:16876972:16881077:16881144,	16876799	16876972	16876853	16876853	Frame_Shift_Del	T	-	p.T187fs
STAD	TCGA-CD-A4MG-01	RBBP7	ENST00000404022.1	chrX	16875716:16875832:16876798:16876945:16881077:16881144,	16876799	16876945	16876853	16876853	Frame_Shift_Del	T	-	p.T187fs
STAD	TCGA-CD-A4MG-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852647	20852647	Frame_Shift_Del	C	-	p.G1081fs
STAD	TCGA-CD-A4MG-01	DYNC1I1	ENST00000437599.1	chr7	95439703:95439818:95442507:95442649:95499194:95499310,	95442508	95442649	95442521	95442521	Frame_Shift_Del	T	-	p.H79fs
STAD	TCGA-CD-A4MG-01	MYO6	ENST00000369977.3,ENST00000369981.3	chr6	76604962:76604977:76608089:76608128:76617321:76617425,	76608090	76608128	76608118	76608118	Frame_Shift_Del	T	-	p.E1055fs
STAD	TCGA-CD-A4MG-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351534	74351534	Frame_Shift_Del	C	-	p.K136fs
STAD	TCGA-CD-A4MG-01	COL4A1	ENST00000375820.4	chr13	110831269:110831383:110831617:110831768:110833638:110833736,	110831618	110831768	110831696	110831696	Frame_Shift_Del	C	-	p.E756fs
STAD	TCGA-CD-A4MG-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347093	347093	Frame_Shift_Del	C	-	p.E640fs
STAD	TCGA-CD-A4MG-01	ERCC8	ENST00000543101.1,ENST00000426742.2,ENST00000381118.3,ENST00000265038.5	chr5	60183266:60183347:60186715:60186913:60194102:60194227,	60186716	60186913	60186878	60186878	Frame_Shift_Del	T	-	p.G294fs
STAD	TCGA-CD-A4MG-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203742	135203742	Frame_Shift_Del	A	-	p.E1082fs
STAD	TCGA-CD-A4MG-01	CLYBL	ENST00000444838.2,ENST00000376355.3,ENST00000376354.1	chr13	100511114:100511303:100517071:100517165:100518493:100518661,	100517072	100517165	100517132	100517133	Frame_Shift_Ins	-	T	p.V201fs
STAD	TCGA-CD-A4MG-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305785	27305786	Frame_Shift_Ins	-	G	p.L449fs
STAD	TCGA-CD-A4MG-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561667	210561667	Frame_Shift_Del	A	-	p.A1471fs
STAD	TCGA-CD-A4MG-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135593	144135593	Frame_Shift_Del	A	-	p.A821fs
STAD	TCGA-CD-A4MG-01	AMOTL1	ENST00000317829.8	chr11	94501536:94501726:94532555:94533477:94554695:94554746,	94532556	94533477	94533351	94533351	Frame_Shift_Del	T	-	p.L332fs
STAD	TCGA-CD-A4MG-01	C4BPB	ENST00000451804.2,ENST00000367076.3	chr1	207262886:207262934:207263655:207263826:207264988:207265050,	207263656	207263826	207263776	207263776	Frame_Shift_Del	T	-	p.L61fs
STAD	TCGA-CD-A4MG-01	C4BPB	ENST00000492730.1,ENST00000391923.1,ENST00000367078.3,ENST00000243611.5,ENST00000452902.2	chr1	207262886:207262934:207263652:207263826:207264988:207265050,	207263653	207263826	207263776	207263776	Frame_Shift_Del	T	-	p.L61fs
STAD	TCGA-CD-A4MG-01	CCP110	ENST00000396212.2,ENST00000381396.5,ENST00000396208.2	chr16	19543737:19543866:19547261:19548909:19551978:19552109,	19547262	19548909	19548632	19548632	Frame_Shift_Del	A	-	p.V547fs
STAD	TCGA-CD-A4MG-01	ABI3BP	ENST00000459682.1	chr3	100568888:100568963:100569503:100569578:100581154:100581229,	100569504	100569578	100569540	100569540	Frame_Shift_Del	T	-	p.T422fs
STAD	TCGA-CD-A4MG-01	ACCSL	ENST00000378832.1,ENST00000527145.1	chr11	44074540:44074618:44074955:44075056:44076751:44076841,	44074956	44075056	44074959	44074959	Frame_Shift_Del	A	-	p.G317fs
STAD	TCGA-CD-A4MG-01	COL9A3	ENST00000343916.3,ENST00000452372.1,ENST00000477612.1,ENST00000489045.1	chr20	61452532:61452568:61452858:61452882:61453108:61453162,	61452859	61452882	61452876	61452877	Frame_Shift_Ins	-	C	p.G121fs
STAD	TCGA-CD-A4MG-01	SLC18A1	ENST00000517776.1,ENST00000276373.5,ENST00000519026.1,ENST00000265808.7,ENST00000440926.1	chr8	20003298:20003387:20004768:20004902:20005113:20005233,	20004769	20004902	20004788	20004788	Frame_Shift_Del	G	-	p.P482fs
STAD	TCGA-CD-A4MG-01	DEPDC1B	ENST00000453022.2	chr5	59943224:59943360:59982788:59983054:59995872:59995961,	59982789	59983054	59982869	59982869	Frame_Shift_Del	T	-	p.F79fs
STAD	TCGA-CD-A4MG-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153588357:153588955:153589675:153589938:153590037:153590155,	153589676	153589938	153589691	153589691	Frame_Shift_Del	G	-	p.T1065fs
STAD	TCGA-CD-A4MG-01	ST18	ENST00000521824.1,ENST00000276480.7,ENST00000522251.1,ENST00000521582.1	chr8	53055489:53055605:53062291:53062537:53071457:53071669,	53062292	53062537	53062481	53062482	Frame_Shift_Ins	-	T	p.N621fs
STAD	TCGA-CD-A4MG-01	BRPF3	ENST00000357641.6,ENST00000441730.2,ENST00000534400.1,ENST00000441123.1	chr6	36179224:36179337:36181656:36182163:36185693:36185787,	36181657	36182163	36181729	36181729	Frame_Shift_Del	C	-	p.S852fs
STAD	TCGA-CD-A4MG-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336955	Frame_Shift_Del	AA	-	p.123_123del
STAD	TCGA-CD-A4MG-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120890	46120890	Frame_Shift_Del	A	-	p.N55fs
STAD	TCGA-CD-A4MG-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499815	42499816	Frame_Shift_Ins	-	A	p.L223fs
STAD	TCGA-CD-A4MG-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693723	Frame_Shift_Del	TT	-	p.690_690del
STAD	TCGA-CD-A4MG-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77644765:77644846:77650885:77650984:77651282:77651522,	77650886	77650984	77650928	77650928	Frame_Shift_Del	T	-	p.A3928fs
STAD	TCGA-CD-A4MG-01	MYCBP2	ENST00000429715.1	chr13	77644765:77644846:77650894:77650984:77651282:77651522,	77650895	77650984	77650928	77650928	Frame_Shift_Del	T	-	p.A3928fs
STAD	TCGA-CD-A4MG-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277954	186277954	Frame_Shift_Del	A	-	p.T1034fs
STAD	TCGA-CD-A4MG-01	ZNF652	ENST00000430262.2	chr17	47390059:47390207:47394187:47395345:47439270:47439355,	47394188	47395345	47394555	47394555	Frame_Shift_Del	T	-	p.K178fs
STAD	TCGA-CD-A4MG-01	CLIP2	ENST00000395060.1,ENST00000223398.6,ENST00000361545.5	chr7	73731876:73731997:73752777:73753334:73768209:73768238,	73752778	73753334	73753188	73753188	Frame_Shift_Del	C	-	p.T177fs
STAD	TCGA-CD-A4MG-01	SLC9A5	ENST00000563723.1,ENST00000299798.11	chr16	67282881:67283104:67286444:67286747:67288923:67289087,	67286445	67286747	67286519	67286519	Frame_Shift_Del	G	-	p.L87fs
STAD	TCGA-CD-A4MG-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560445	32560445	Frame_Shift_Del	A	-	p.S190X
STAD	TCGA-CD-A4MG-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469778	161469778	Frame_Shift_Del	A	-	p.K158fs
STAD	TCGA-D7-6527-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579585	7579585	Frame_Shift_Del	G	-	p.L35fs
STAD	TCGA-D7-6527-01	CTDSPL2	ENST00000558373.1,ENST00000396780.1,ENST00000558966.1,ENST00000260327.4	chr15	44811421:44811493:44813508:44813604:44816306:44816634,	44813509	44813604	44813530	44813530	Frame_Shift_Del	G	-	p.I420fs
STAD	TCGA-HU-A4G8-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
STAD	TCGA-HU-A4G8-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236161	42236161	Frame_Shift_Del	G	-	p.L390fs
STAD	TCGA-HU-A4G8-01	GUCY2C	ENST00000261170.3,ENST00000535803.1	chr12	14829787:14829905:14832590:14832687:14834289:14834411,	14832591	14832687	14832594	14832594	Frame_Shift_Del	A	-	p.F276fs
STAD	TCGA-HU-A4G8-01	COL6A1	ENST00000486023.1,ENST00000361866.3,ENST00000498614.1	chr21	47422440:47422624:47423033:47423063:47423304:47424020,	47423034	47423063	47423058	47423059	Frame_Shift_Ins	-	C	p.C820fs
STAD	TCGA-HU-A4G8-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852654:182852770:182853747:182853948:182856217:182856882,	182853748	182853948	182853931	182853932	Frame_Shift_Del	TA	-	p.1148_1148del
STAD	TCGA-HU-A4G8-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289119	31289120	Frame_Shift_Ins	-	C	p.H627fs
STAD	TCGA-HU-A4G8-01	TNKS1BP1	ENST00000528882.1	chr11	57085291:57085361:57087538:57088186:57089265:57089424,	57087539	57088186	57087895	57087895	Frame_Shift_Del	G	-	p.P129fs
STAD	TCGA-HU-A4G8-01	TNKS1BP1	ENST00000532437.1,ENST00000358252.3	chr11	57085291:57085361:57087552:57088186:57089265:57089424,	57087553	57088186	57087895	57087895	Frame_Shift_Del	G	-	p.P129fs
STAD	TCGA-HU-A4G8-01	DDX50	ENST00000471475.1,ENST00000373585.3,ENST00000483593.1	chr10	70670062:70670138:70670823:70671002:70672917:70672986,	70670824	70671002	70670981	70670982	Frame_Shift_Ins	-	A	p.I206fs
STAD	TCGA-HU-A4G8-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-HU-A4G8-01	ITGA7	ENST00000394230.2,ENST00000257880.7,ENST00000553804.1,ENST00000555728.1,ENST00000347027.6,ENST00000257879.6,ENST00000394229.2,ENST00000452168.2	chr12	56091721:56091810:56092166:56092360:56092493:56092677,	56092167	56092360	56092271	56092271	Frame_Shift_Del	C	-	p.G367fs
STAD	TCGA-HU-A4G8-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525559	75525560	Frame_Shift_Ins	-	C	p.V456fs
STAD	TCGA-HU-A4G8-01	ACP1	ENST00000484464.1,ENST00000453390.1,ENST00000442386.1,ENST00000272065.5,ENST00000463831.1,ENST00000272067.6	chr2	272036:272150:276979:277085:277226:277261,275139:275201:276979:277085:277226:277261,	276980	277085	277054	277054	Frame_Shift_Del	A	-	p.Q123fs
STAD	TCGA-HU-A4G8-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4G8-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4G8-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4G8-01	SF1	ENST00000486960.1,ENST00000334944.5,ENST00000227503.9,ENST00000448404.1,ENST00000422298.2,ENST00000433274.2,ENST00000377387.1,ENST00000377394.3,ENST00000377390.3	chr11	64536749:64536810:64536897:64537081:64537435:64537525,	64536898	64537081	64537024	64537024	Frame_Shift_Del	C	-	p.K305fs
STAD	TCGA-HU-A4G8-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29912156	29912156	Frame_Shift_Del	C	-	p.K292fs
STAD	TCGA-HU-A4G8-01	CHL1	ENST00000453040.1,ENST00000397491.2,ENST00000256509.2	chr3	436375:436555:439909:440068:440699:440831,	439910	440068	440036	440036	Frame_Shift_Del	T	-	p.I1074fs
STAD	TCGA-HU-A4G8-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658017	27658018	Frame_Shift_Ins	-	C	p.D195fs
STAD	TCGA-HU-A4G8-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93712394:93712511:93720027:93720171:93721891:93722095,	93720028	93720171	93720077	93720077	Frame_Shift_Del	A	-	p.E1083fs
STAD	TCGA-HU-A4G8-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104333286:104333403:104335187:104335325:104335406:104335484,	104335188	104335325	104335305	104335305	Frame_Shift_Del	A	-	p.S403fs
STAD	TCGA-HU-A4G8-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-HU-A4G8-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878042	Frame_Shift_Del	TT	-	p.81_81del
STAD	TCGA-HU-A4G8-01	PTPRZ1	ENST00000393386.2	chr7	121671527:121671613:121674148:121674169:121674335:121674394,	121674149	121674169	121674154	121674157	Frame_Shift_Del	GAAA	-	p.1724_1725del
STAD	TCGA-HU-A4G8-01	REL	ENST00000394479.3	chr2	61147175:61147244:61147708:61147777:61148897:61150119,	61147709	61147777	61147771	61147771	Frame_Shift_Del	A	-	p.F360fs
STAD	TCGA-HU-A4G8-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521525	46521525	Frame_Shift_Del	T	-	p.M295fs
STAD	TCGA-HU-A4G8-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547399	35547399	Frame_Shift_Del	C	-	p.T294fs
STAD	TCGA-HU-A4G8-01	OGDH	ENST00000222673.5,ENST00000443864.2	chr7	44687255:44687358:44706334:44706450:44713385:44713540,	44706335	44706450	44706400	44706400	Frame_Shift_Del	G	-	p.I194fs
STAD	TCGA-HU-A4G8-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068108	88068108	Frame_Shift_Del	A	-	p.K106fs
STAD	TCGA-HU-A4G8-01	FANCB	ENST00000452869.1,ENST00000324138.3,ENST00000398334.1	chrX	14862624:14862862:14862977:14863408:14868626:14868796,	14862978	14863408	14863039	14863040	Frame_Shift_Ins	-	A	p.L622fs
STAD	TCGA-HU-A4G8-01	PPM1B	ENST00000409432.3,ENST00000409473.2,ENST00000378551.2,ENST00000282412.4,ENST00000345249.4,ENST00000419807.1,ENST00000378540.4	chr2	44436402:44436466:44445105:44445217:44445618:44445676,	44445106	44445217	44445212	44445212	Frame_Shift_Del	T	-	p.A357fs
STAD	TCGA-HU-A4G8-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541324	187541324	Frame_Shift_Del	T	-	p.K2139fs
STAD	TCGA-HU-A4G8-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76912049:76912143:76918870:76919047:76920133:76920267,	76918871	76919047	76918921	76918921	Frame_Shift_Del	T	-	p.K1357fs
STAD	TCGA-HU-A4G8-01	HPGD	ENST00000504433.1,ENST00000296521.7,ENST00000296522.6,ENST00000542498.1,ENST00000514584.1,ENST00000510901.1,ENST00000512410.1,ENST00000506910.1	chr4	175429846:175429943:175439121:175439228:175443094:175443214,	175439122	175439228	175439139	175439139	Frame_Shift_Del	T	-	p.T103fs
STAD	TCGA-HU-A4G8-01	ZCWPW1	ENST00000472716.1	chr7	100016768:100016812:100017252:100017436:100018244:100018301,	100017253	100017436	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-HU-A4G8-01	ZCWPW1	ENST00000464510.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100016768:100016812:100017252:100017506:100018244:100018301,	100017253	100017506	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-HU-A4G8-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89347320	89347320	Frame_Shift_Del	G	-	p.P1877fs
STAD	TCGA-HU-A4G8-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458972	Frame_Shift_Del	GG	-	p.38_38del
STAD	TCGA-HU-A4G8-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458972	Frame_Shift_Del	GG	-	p.38_38del
STAD	TCGA-HU-A4G8-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028582	150028582	Frame_Shift_Del	G	-	p.P492fs
STAD	TCGA-HU-A4G8-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000582678.1	chr17	61559826:61560050:61560389:61560534:61560820:61560919,	61560390	61560534	61560426	61560426	Frame_Shift_Del	A	-	p.E460fs
STAD	TCGA-HU-A4G8-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883808	4883808	Frame_Shift_Del	G	-	p.P293fs
STAD	TCGA-HU-A4G8-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-HU-A4G8-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-HU-A4G8-01	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870751	101870751	Frame_Shift_Del	C	-	p.C1089fs
STAD	TCGA-HU-A4G8-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61834216	61834217	Frame_Shift_Ins	-	G	p.P2141fs
STAD	TCGA-HU-A4G8-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541247	187541247	Frame_Shift_Del	A	-	p.S2165X
STAD	TCGA-HU-A4G8-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102848	61102848	Frame_Shift_Del	A	-	p.F496fs
STAD	TCGA-HU-A4G8-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324568	31324568	Frame_Shift_Del	C	-	p.P81fs
STAD	TCGA-HU-A4G8-01	HLA-B	ENST00000412585.2	chr6	31323943:31324219:31324464:31324734:31324862:31324956,	31324465	31324734	31324568	31324568	Frame_Shift_Del	C	-	p.P81fs
STAD	TCGA-HU-A4G8-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748661	43748661	Frame_Shift_Del	T	-	p.E716fs
STAD	TCGA-HU-A4G8-01	RPS6KA5	ENST00000261991.3,ENST00000418736.2,ENST00000556178.1,ENST00000554206.1,ENST00000536315.2	chr14	91367018:91367080:91369151:91369313:91372492:91372643,	91369152	91369313	91369281	91369281	Frame_Shift_Del	T	-	p.V331fs
STAD	TCGA-HU-A4G8-01	GALNT2	ENST00000543760.1,ENST00000366672.4	chr1	230384929:230385017:230386202:230386306:230390963:230391090,	230386203	230386306	230386205	230386205	Frame_Shift_Del	C	-	p.T303fs
STAD	TCGA-HU-A4G8-01	CCM2L	ENST00000262659.8	chr20	30598252:30598287:30602706:30602874:30605602:30605686,	30602707	30602874	30602812	30602812	Frame_Shift_Del	C	-	p.Y45fs
STAD	TCGA-HU-A4G8-01	WDR90	ENST00000549091.1,ENST00000548844.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1,ENST00000552943.1	chr16	708895:709011:709085:709126:709244:709376,	709086	709126	709105	709106	Frame_Shift_Ins	-	C	p.A1011fs
STAD	TCGA-HU-A4G8-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108338	102108338	Frame_Shift_Del	T	-	p.W159fs
STAD	TCGA-HU-A4G8-01	DNAJC2	ENST00000475065.1,ENST00000249270.7,ENST00000454277.1,ENST00000379263.3,ENST00000379257.3	chr7	102964044:102964110:102964928:102965009:102966989:102967131,	102964929	102965009	102964991	102964992	Frame_Shift_Ins	-	T	p.N197fs
STAD	TCGA-HU-A4G8-01	OXNAD1	ENST00000544043.1,ENST00000606098.1,ENST00000285083.5,ENST00000435829.2,ENST00000605932.1,ENST00000442255.1,ENST00000452581.1	chr3	16327848:16327955:16336362:16336504:16343132:16343293,	16336363	16336504	16336480	16336481	Frame_Shift_Ins	-	C	p.P136fs
STAD	TCGA-HU-A4G8-01	KBTBD4	ENST00000533290.1,ENST00000526005.1,ENST00000430070.2,ENST00000395288.2	chr11	47593778:47595342:47597144:47597251:47598962:47599576,	47597145	47597251	47597166	47597167	Frame_Shift_Del	CT	-	p.241_242del
STAD	TCGA-HU-A4G8-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20348612:20348775:20352412:20352658:20355345:20355448,	20352413	20352658	20352437	20352438	Frame_Shift_Ins	-	G	p.L518fs
STAD	TCGA-HU-A4G8-01	ASS1	ENST00000372394.1,ENST00000372393.3,ENST00000422569.1,ENST00000443588.1,ENST00000352480.5	chr9	133327650:133327720:133329691:133329760:133333787:133333976,	133329692	133329760	133329755	133329755	Frame_Shift_Del	A	-	p.A56fs
STAD	TCGA-HU-A4G8-01	SSBP2	ENST00000507655.1,ENST00000505980.1,ENST00000506960.1,ENST00000504174.1,ENST00000509053.1,ENST00000320672.4,ENST00000512098.1,ENST00000509013.2,ENST00000515395.1,ENST00000514493.1	chr5	80911304:80911376:80932375:80932437:80946085:80946158,	80932376	80932437	80932421	80932421	Frame_Shift_Del	T	-	p.N51fs
STAD	TCGA-HU-A4G8-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971088	21971089	Frame_Shift_Ins	-	A	p.P105fs
STAD	TCGA-HU-A4G8-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971088	21971089	Frame_Shift_Ins	-	A	p.P105fs
STAD	TCGA-HU-A4G8-01	PWP1	ENST00000541166.1,ENST00000547120.1,ENST00000412830.3,ENST00000552760.1	chr12	108086776:108086873:108090250:108090361:108091243:108091355,	108090251	108090361	108090314	108090317	Frame_Shift_Del	TGAG	-	p.189_190del
STAD	TCGA-HU-A4G8-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474066	103474067	Frame_Shift_Ins	-	C	p.P558fs
STAD	TCGA-HU-A4G8-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380652	109380652	Frame_Shift_Del	A	-	p.V1219fs
STAD	TCGA-HU-A4G8-01	PIK3C3	ENST00000588156.1,ENST00000593098.1,ENST00000262039.4,ENST00000398870.3	chr18	39629494:39629569:39644703:39644794:39647351:39647374,39637846:39638015:39644703:39644794:39647351:39647374,	39644704	39644794	39644789	39644789	Frame_Shift_Del	A	-	p.V839fs
STAD	TCGA-HU-A4G8-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561326	32561326	Frame_Shift_Del	A	-	p.E484fs
STAD	TCGA-CD-8527-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832909	24832910	Frame_Shift_Ins	-	A	p.K1570fs
STAD	TCGA-HU-A4GF-01	HIP1R	ENST00000535012.1,ENST00000536617.1,ENST00000253083.4	chr12	123345677:123345739:123345854:123346061:123346252:123346631,	123345855	123346061	123345886	123345887	Frame_Shift_Ins	-	G	p.E995fs
STAD	TCGA-HU-A4GF-01	PREPL	ENST00000378511.3,ENST00000410081.1,ENST00000409411.1,ENST00000409272.1,ENST00000409957.1,ENST00000426481.1,ENST00000541738.1,ENST00000425263.1,ENST00000260648.6,ENST00000378520.3,ENST00000409936.1	chr2	44548211:44548584:44548965:44549039:44549869:44549993,	44548966	44549039	44549026	44549026	Frame_Shift_Del	A	-	p.N679fs
STAD	TCGA-HU-A4GF-01	ERGIC3	ENST00000357394.4,ENST00000447986.1,ENST00000416206.1,ENST00000348547.2,ENST00000279052.6	chr20	34143977:34144042:34144743:34144880:34144964:34144987,	34144744	34144880	34144843	34144844	Frame_Shift_Del	CT	-	p.331_332del
STAD	TCGA-HU-A4GF-01	ERGIC3	ENST00000451605.1	chr20	34143977:34144042:34144725:34144880:34144964:34144987,	34144726	34144880	34144843	34144844	Frame_Shift_Del	CT	-	p.331_332del
STAD	TCGA-HU-A4GF-01	ERGIC3	ENST00000442139.1	chr20	34143977:34144042:34144647:34144880:34144964:34144987,	34144648	34144880	34144843	34144844	Frame_Shift_Del	CT	-	p.331_332del
STAD	TCGA-HU-A4GF-01	CRTAP	ENST00000449224.1	chr3	33155545:33156040:33161835:33161985:33165899:33166071,	33161836	33161985	33161979	33161980	Frame_Shift_Del	AT	-	p.205_205del
STAD	TCGA-HU-A4H6-01	LAIR1	ENST00000418556.1,ENST00000475389.1,ENST00000348231.4,ENST00000474878.1,ENST00000313038.6,ENST00000391743.3,ENST00000391742.2,ENST00000434277.2,ENST00000440716.1,ENST00000463489.1,ENST00000391741.2	chr19	54867845:54867876:54867964:54868007:54868099:54868228,	54867965	54868007	54867999	54868000	Frame_Shift_Ins	-	G	p.R198fs
STAD	TCGA-CD-5813-01	UBR2	ENST00000372899.1,ENST00000372901.1,ENST00000372903.2	chr6	42559888:42559967:42561928:42562042:42571325:42571456,	42561929	42562042	42562022	42562061	Frame_Shift_Del	TCTGAAATTGAGGAAGAAGAGGTAAAAACATTTTCACAAA	-	p.170_177del
STAD	TCGA-CD-5801-01	ROPN1	ENST00000405845.3,ENST00000184183.4	chr3	123688888:123689064:123694225:123694387:123695710:123695828,	123694226	123694387	123694301	123694301	Frame_Shift_Del	C	-	p.M108X
STAD	TCGA-CD-A487-01	LEPROTL1	ENST00000321250.8,ENST00000518192.1	chr8	29959455:29959489:29961815:29962002:29994787:29995213,29959455:29959489:29961815:29962002:29963261:29963544,	29961816	29962002	29961840	29961841	Frame_Shift_Ins	-	T	p.L39fs
STAD	TCGA-CD-A487-01	NSFL1C	ENST00000381653.5	chr20	1424379:1424556:1426310:1426794:1433137:1433275,	1426311	1426794	1426464	1426465	Frame_Shift_Ins	-	G	p.Q266fs
STAD	TCGA-CD-A487-01	NSFL1C	ENST00000350991.4,ENST00000461211.1,ENST00000381658.4,ENST00000216879.4,ENST00000476071.1,ENST00000353088.2,ENST00000555944.1	chr20	1424379:1424556:1426310:1426475:1433137:1433275,	1426311	1426475	1426464	1426465	Frame_Shift_Ins	-	G	p.Q266fs
STAD	TCGA-CG-4466-01	ACSL5	ENST00000369410.3,ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000354655.4	chr10	114170341:114170393:114171213:114171287:114171659:114171737,	114171214	114171287	114171218	114171218	Frame_Shift_Del	C	-	p.D323fs
STAD	TCGA-CG-4466-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934726	223934727	Frame_Shift_Del	AG	-	p.196_196del
STAD	TCGA-BR-6852-01	CXADR	ENST00000400169.1,ENST00000284878.7	chr21	18931293:18931449:18933019:18933142:18933655:18933794,	18933020	18933142	18933045	18933045	Frame_Shift_Del	A	-	p.V199fs
STAD	TCGA-BR-6852-01	AMHR2	ENST00000257863.4	chr12	53823614:53823762:53823929:53824066:53824960:53825257,	53823930	53824066	53824050	53824050	Frame_Shift_Del	G	-	p.W470fs
STAD	TCGA-BR-6852-01	AMHR2	ENST00000550311.1	chr12	53823614:53823762:53823933:53824066:53824960:53825257,	53823934	53824066	53824050	53824050	Frame_Shift_Del	G	-	p.W470fs
STAD	TCGA-BR-6852-01	FUNDC2	ENST00000484175.1,ENST00000475165.1,ENST00000369498.3	chrX	154261700:154261828:154274783:154274859:154279944:154280007,	154274784	154274859	154274835	154274835	Frame_Shift_Del	G	-	p.V112fs
STAD	TCGA-BR-6852-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831768	2831768	Frame_Shift_Del	C	-	p.V435fs
STAD	TCGA-BR-6852-01	GLRX3	ENST00000481034.1,ENST00000331244.5,ENST00000368644.1	chr10	131943474:131943583:131958258:131958333:131959059:131959137,	131958259	131958333	131958325	131958325	Frame_Shift_Del	T	-	p.L89fs
STAD	TCGA-BR-6852-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431074	36431074	Frame_Shift_Del	C	-	p.N249fs
STAD	TCGA-BR-6852-01	TEX2	ENST00000258991.3	chr17	62254684:62254831:62265527:62265796:62270918:62271249,	62265528	62265796	62265566	62265566	Frame_Shift_Del	G	-	p.L803fs
STAD	TCGA-BR-6852-01	TEX2	ENST00000583501.1,ENST00000583097.1,ENST00000584379.1	chr17	62254684:62254831:62265527:62265775:62270918:62271249,	62265528	62265775	62265566	62265566	Frame_Shift_Del	G	-	p.L803fs
STAD	TCGA-BR-6852-01	SAAL1	ENST00000531751.1	chr11	18105081:18105278:18108412:18108601:18108689:18108753,18102957:18103050:18108412:18108601:18108689:18108753,	18108413	18108601	18108472	18108473	Frame_Shift_Ins	-	A	p.S328fs
STAD	TCGA-BR-6852-01	BBX	ENST00000325805.8,ENST00000406780.1,ENST00000415149.2,ENST00000402543.1	chr3	107474444:107474525:107491474:107492483:107493565:107493704,	107491475	107492483	107492284	107492284	Frame_Shift_Del	A	-	p.I572fs
STAD	TCGA-BR-6852-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735432	95735432	Frame_Shift_Del	A	-	p.L883fs
STAD	TCGA-BR-6852-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984684	123984684	Frame_Shift_Del	C	-	p.A465fs
STAD	TCGA-BR-6852-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005455	150005455	Frame_Shift_Del	G	-	p.P257fs
STAD	TCGA-BR-6852-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912846	159912846	Frame_Shift_Del	G	-	p.L52fs
STAD	TCGA-BR-6852-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561666	210561667	Frame_Shift_Ins	-	A	p.A1471fs
STAD	TCGA-BR-6852-01	SERPIND1	ENST00000215727.5,ENST00000406799.1	chr22	21133783:21134489:21138259:21138533:21140291:21140436,	21138260	21138533	21138420	21138420	Frame_Shift_Del	G	-	p.V350fs
STAD	TCGA-BR-6852-01	ZC3H13	ENST00000282007.3,ENST00000242848.4	chr13	46594583:46594692:46616298:46616410:46619089:46619199,	46616299	46616410	46616336	46616337	Frame_Shift_Ins	-	G	p.Q101fs
STAD	TCGA-BR-6852-01	MGST2	ENST00000515067.1,ENST00000515137.1,ENST00000265498.1,ENST00000503816.1	chr4	140616350:140616421:140624608:140624690:140625169:140625222,	140624609	140624690	140624683	140624683	Frame_Shift_Del	A	-	p.A101fs
STAD	TCGA-BR-6852-01	STK25	ENST00000487962.1,ENST00000478403.1,ENST00000405883.3,ENST00000535007.1,ENST00000316586.4,ENST00000405585.1,ENST00000401869.1,ENST00000543554.1,ENST00000403346.3	chr2	242437030:242437102:242437649:242437764:242438053:242438199,	242437650	242437764	242437662	242437662	Frame_Shift_Del	G	-	p.S341fs
STAD	TCGA-BR-6852-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351425	134351425	Frame_Shift_Del	C	-	p.R1303fs
STAD	TCGA-BR-6852-01	BTBD11	ENST00000280758.5,ENST00000357167.4,ENST00000490090.2	chr12	108010865:108010959:108011077:108011213:108011934:108012155,	108011078	108011213	108011162	108011162	Frame_Shift_Del	C	-	p.T727fs
STAD	TCGA-BR-6852-01	TPO	ENST00000497517.2	chr2	1500366:1500537:1507719:1507851:1520654:1520751,1497573:1497811:1507719:1507851:1520654:1520751,	1507720	1507851	1507748	1507748	Frame_Shift_Del	C	-	p.H805fs
STAD	TCGA-BR-6852-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095843	143095843	Frame_Shift_Del	T	-	p.A12fs
STAD	TCGA-BR-6852-01	ATRNL1	ENST00000355044.3	chr10	116925317:116925405:116930794:116931050:116975454:116975638,	116930795	116931050	116930893	116930893	Frame_Shift_Del	A	-	p.T397fs
STAD	TCGA-BR-6852-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.P23fs
STAD	TCGA-BR-6852-01	PPEF1	ENST00000543630.1,ENST00000496075.2,ENST00000544635.1,ENST00000349874.5,ENST00000379962.3,ENST00000361511.4,ENST00000359763.6	chrX	18775744:18775859:18779647:18779694:18797127:18797294,	18779648	18779694	18779674	18779675	Frame_Shift_Ins	-	T	p.L180fs
STAD	TCGA-BR-6852-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345823	122345823	Frame_Shift_Del	A	-	p.M460fs
STAD	TCGA-BR-6852-01	MDFI	ENST00000419164.1,ENST00000373051.2,ENST00000230321.6,ENST00000432027.1	chr6	41613991:41614046:41617356:41617581:41621056:41621182,	41617357	41617581	41617367	41617367	Frame_Shift_Del	G	-	p.Q90fs
STAD	TCGA-BR-6852-01	CCM2L	ENST00000262659.8	chr20	30598252:30598287:30602706:30602874:30605602:30605686,	30602707	30602874	30602812	30602812	Frame_Shift_Del	C	-	p.Y45fs
STAD	TCGA-BR-6852-01	USH1C	ENST00000318024.4,ENST00000529563.1,ENST00000526313.1,ENST00000527720.1,ENST00000527020.1	chr11	17515878:17515923:17518304:17518360:17519708:17519818,	17518305	17518360	17518325	17518326	Frame_Shift_Ins	-	G	p.P842fs
STAD	TCGA-BR-6852-01	MRPL24	ENST00000368211.4	chr1	156708214:156708230:156708313:156708556:156710803:156710880,156708214:156708230:156708313:156708556:156710844:156710923,	156708314	156708556	156708445	156708445	Frame_Shift_Del	G	-	p.H18fs
STAD	TCGA-BR-6852-01	CFLAR	ENST00000309955.3,ENST00000423241.2,ENST00000342795.5,ENST00000340870.5,ENST00000479953.2,ENST00000462763.1,ENST00000355558.4,ENST00000457277.1,ENST00000443227.1	chr2	202000694:202000830:202005079:202005162:202010100:202010155,	202005080	202005162	202005127	202005128	Frame_Shift_Ins	-	A	p.Q191fs
STAD	TCGA-BR-6852-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91670017:91670212:91671359:91671500:91671981:91672085,	91671360	91671500	91671391	91671392	Frame_Shift_Ins	-	AG	p.S1650fs
STAD	TCGA-BR-6852-01	DNAJC21	ENST00000382021.2	chr5	34944971:34945130:34945865:34945908:34950274:34950447,34944971:34945130:34945865:34945908:34949647:34949782,	34945866	34945908	34945872	34945873	Frame_Shift_Ins	-	A	p.S383fs
STAD	TCGA-BR-6852-01	DNAJC21	ENST00000514237.1,ENST00000303525.7	chr5	34944971:34945130:34945826:34945908:34950274:34950447,	34945827	34945908	34945872	34945873	Frame_Shift_Ins	-	A	p.S383fs
STAD	TCGA-BR-6852-01	TTLL7	ENST00000485638.1,ENST00000474957.1,ENST00000480174.1,ENST00000260505.8	chr1	84376918:84377046:84383286:84383373:84385381:84385517,	84383287	84383373	84383310	84383310	Frame_Shift_Del	T	-	p.T522fs
STAD	TCGA-BR-6852-01	TTLL7	ENST00000472688.1	chr1	84376918:84377046:84383286:84383369:84385381:84385517,	84383287	84383369	84383310	84383310	Frame_Shift_Del	T	-	p.T522fs
STAD	TCGA-BR-6852-01	GAPVD1	ENST00000265956.4,ENST00000495955.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000394105.2	chr9	128103513:128103543:128104497:128104578:128109097:128109220,	128104498	128104578	128104522	128104522	Frame_Shift_Del	A	-	p.E1024fs
STAD	TCGA-BR-6852-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041489	86041489	Frame_Shift_Del	A	-	p.I500fs
STAD	TCGA-BR-6852-01	MACF1	ENST00000372915.3,ENST00000530262.1,ENST00000539005.1,ENST00000545844.1,ENST00000496804.1,ENST00000317713.7,ENST00000524432.1,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39784124:39784287:39785335:39785419:39788279:39788387,	39785336	39785419	39785384	39785385	Frame_Shift_Ins	-	A	p.Q1337fs
STAD	TCGA-BR-6852-01	CCDC83	ENST00000526729.1,ENST00000376067.1	chr11	85584273:85584338:85593555:85593718:85606335:85606427,	85593556	85593718	85593704	85593704	Frame_Shift_Del	A	-	p.E110fs
STAD	TCGA-BR-6852-01	TMEFF2	ENST00000392314.1	chr2	192814742:192815133:192818404:192818563:192820980:192821102,192813768:192815190:192818404:192818563:192820980:192821104,	192818405	192818563	192818525	192818525	Frame_Shift_Del	T	-	p.K303fs
STAD	TCGA-BR-6852-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181813	100181814	Frame_Shift_Ins	-	A	p.L142fs
STAD	TCGA-BR-6852-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618272	201618272	Frame_Shift_Del	C	-	p.T159fs
STAD	TCGA-BR-6852-01	NPC1	ENST00000412552.2,ENST00000591075.1,ENST00000591051.1,ENST00000269228.5	chr18	21116705:21116840:21118505:21118635:21119318:21119434,	21118506	21118635	21118569	21118569	Frame_Shift_Del	C	-	p.G993fs
STAD	TCGA-BR-4256-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788023	Frame_Shift_Del	T	-	p.V1116fs
STAD	TCGA-BR-4256-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724115	230724116	Frame_Shift_Ins	-	T	p.P92fs
STAD	TCGA-BR-4256-01	NOL8	ENST00000360868.3,ENST00000535387.1,ENST00000544867.1,ENST00000442668.2,ENST00000545558.1,ENST00000542053.1,ENST00000536593.1,ENST00000358855.4,ENST00000545444.1,ENST00000432670.2	chr9	95068034:95068112:95069167:95069306:95072452:95072543,	95069168	95069306	95069255	95069255	Frame_Shift_Del	T	-	p.K913fs
STAD	TCGA-BR-4256-01	AHR	ENST00000463496.1,ENST00000242057.4	chr7	17375268:17375410:17378609:17379852:17382544:17383477,	17378610	17379852	17379636	17379636	Frame_Shift_Del	C	-	p.Y729fs
STAD	TCGA-BR-4256-01	GANAB	ENST00000529737.1	chr11	62406830:62406939:62407102:62407203:62414033:62414074,	62407103	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
STAD	TCGA-BR-4256-01	GANAB	ENST00000346178.4,ENST00000356638.3	chr11	62406830:62406939:62407098:62407203:62414033:62414074,	62407099	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
STAD	TCGA-BR-4256-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984684	123984684	Frame_Shift_Del	C	-	p.A465fs
STAD	TCGA-BR-4256-01	GPNMB	ENST00000381990.2,ENST00000258733.4,ENST00000409458.3,ENST00000453162.2	chr7	23286393:23286546:23292925:23293078:23293787:23293931,	23292926	23293078	23293063	23293063	Frame_Shift_Del	A	-	p.W69X
STAD	TCGA-BR-4256-01	SRD5A3	ENST00000505210.1	chr4	56212578:56212724:56225512:56225655:56235998:56236142,	56225513	56225655	56225516	56225516	Frame_Shift_Del	T	-	p.Y75fs
STAD	TCGA-BR-4256-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5790076	5790076	Frame_Shift_Del	A	-	p.L1564X
STAD	TCGA-BR-4256-01	MTIF3	ENST00000461838.1,ENST00000493719.1,ENST00000471771.1,ENST00000485959.1,ENST00000405591.2,ENST00000381120.3	chr13	28011405:28011410:28014125:28014586:28015153:28015214,28011405:28011410:28014125:28014586:28019224:28019274,	28014126	28014586	28014376	28014377	Frame_Shift_Ins	-	T	p.K70fs
STAD	TCGA-BR-4256-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256207	9256207	Frame_Shift_Del	A	-	p.E981fs
STAD	TCGA-BR-4256-01	SLC30A9	ENST00000513699.1,ENST00000264451.7	chr4	42025318:42025401:42037291:42037350:42041002:42041070,	42037292	42037350	42037307	42037307	Frame_Shift_Del	A	-	p.Q209fs
STAD	TCGA-BR-4256-01	WLS	ENST00000370976.3,ENST00000262348.4	chr1	68564155:68564436:68603462:68603616:68610251:68610335,68591656:68592018:68603462:68603616:68610251:68610335,	68603463	68603616	68603558	68603558	Frame_Shift_Del	A	-	p.F474fs
STAD	TCGA-BR-4256-01	SLC17A1	ENST00000377886.2,ENST00000476801.1,ENST00000427328.1	chr6	25826688:25826861:25830751:25830835:25832221:25832224,	25830752	25830835	25830752	25830753	Frame_Shift_Ins	-	T	p.V12fs
STAD	TCGA-BR-4256-01	BRF1	ENST00000546417.1,ENST00000552127.1,ENST00000546474.1,ENST00000551787.1,ENST00000547562.1,ENST00000379932.4,ENST00000327359.3,ENST00000440513.3,ENST00000379937.2,ENST00000392557.4,ENST00000446501.2,ENST00000549655.1	chr14	105692459:105692498:105692587:105692627:105692970:105693097,	105692588	105692627	105692604	105692604	Frame_Shift_Del	T	-	p.L314fs
STAD	TCGA-BR-4256-01	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204144781:204144836:204150334:204150455:204154487:204154599,	204150335	204150455	204150380	204150380	Frame_Shift_Del	A	-	p.Q299fs
STAD	TCGA-BR-4256-01	C19orf47	ENST00000392035.2,ENST00000582006.1,ENST00000582783.1	chr19	40832315:40832393:40834319:40834457:40839757:40839836,	40834320	40834457	40834399	40834399	Frame_Shift_Del	G	-	p.R158fs
STAD	TCGA-BR-4256-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152319553	152319553	Frame_Shift_Del	A	-	p.R1173fs
STAD	TCGA-BR-4256-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.T1288fs
STAD	TCGA-BR-4256-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577440	48577440	Frame_Shift_Del	A	-	p.P874fs
STAD	TCGA-BR-4256-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3	chr20	37179713:37179866:37182509:37182719:37186937:37187096,	37182510	37182719	37182676	37182676	Frame_Shift_Del	T	-	p.L1110fs
STAD	TCGA-BR-4256-01	APOA1	ENST00000375323.1,ENST00000236850.4,ENST00000375320.1,ENST00000359492.2	chr11	116706979:116707127:116707716:116707873:116708060:116708123,	116707717	116707873	116707832	116707832	Frame_Shift_Del	G	-	p.Q29fs
STAD	TCGA-BR-4256-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624320	117624320	Frame_Shift_Del	A	-	p.E145fs
STAD	TCGA-BR-4256-01	KIF6	ENST00000287152.7,ENST00000538893.1,ENST00000373215.3,ENST00000373216.3,ENST00000458470.1	chr6	39563829:39564036:39580964:39581094:39602624:39602734,	39580965	39581094	39580993	39580993	Frame_Shift_Del	A	-	p.L204fs
STAD	TCGA-BR-4256-01	ZDHHC6	ENST00000369404.3,ENST00000369405.3	chr10	114198093:114198147:114200291:114200453:114201949:114202017,	114200292	114200453	114200298	114200298	Frame_Shift_Del	A	-	p.I226fs
STAD	TCGA-BR-4256-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
STAD	TCGA-BR-4256-01	TAMM41	ENST00000444133.2,ENST00000455809.1	chr3	11849306:11849369:11850990:11851156:11858665:11858811,	11850991	11851156	11851058	11851059	Frame_Shift_Ins	-	T	p.N269fs
STAD	TCGA-BR-4256-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521525	46521525	Frame_Shift_Del	T	-	p.M295fs
STAD	TCGA-BR-4256-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645339	Frame_Shift_Del	A	-	p.A201fs
STAD	TCGA-BR-4256-01	RASA3	ENST00000389544.4,ENST00000334062.7	chr13	114748437:114748833:114751085:114751269:114757960:114758064,	114751086	114751269	114751195	114751195	Frame_Shift_Del	G	-	p.Q774fs
STAD	TCGA-BR-4256-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127462	170127462	Frame_Shift_Del	A	-	p.S758X
STAD	TCGA-BR-6707-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101593	27101593	Frame_Shift_Del	A	-	p.I1625fs
STAD	TCGA-BR-6707-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101593	27101593	Frame_Shift_Del	A	-	p.I1625fs
STAD	TCGA-BR-7723-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56483374	56483383	Frame_Shift_Del	TGTGCTGCCC	-	p.1817_1820del
STAD	TCGA-BR-7723-01	LBR	ENST00000338179.2,ENST00000272163.4	chr1	225592105:225592228:225592327:225592408:225594365:225594534,	225592328	225592408	225592318	225592330	Frame_Shift_Del	CAATACTTACGTG	-	p.521_522del
STAD	TCGA-CG-4441-01	RIOK3	ENST00000581339.1,ENST00000581302.1	chr18	21054911:21055071:21056969:21057232:21059280:21059388,	21056970	21057232	21057016	21057017	Frame_Shift_Ins	-	CAGTGAG	p.L407fs
STAD	TCGA-BR-4184-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890940	Frame_Shift_Del	TT	-	p.163_163del
STAD	TCGA-BR-4184-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134568	128134568	Frame_Shift_Del	T	-	p.V407fs
STAD	TCGA-BR-4184-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408081	179408081	Frame_Shift_Del	T	-	p.I116fs
STAD	TCGA-BR-4184-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62943447:62943610:62946660:62946954:62949773:62949972,	62946661	62946954	62946678	62946678	Frame_Shift_Del	T	-	p.Y978fs
STAD	TCGA-BR-4184-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
STAD	TCGA-BR-4184-01	TSPAN8	ENST00000247829.3,ENST00000552128.1,ENST00000546561.1,ENST00000393330.2	chr12	71518932:71519167:71523110:71523194:71526472:71526604,	71523111	71523194	71523157	71523157	Frame_Shift_Del	T	-	p.N205fs
STAD	TCGA-BR-4184-01	PDGFRL	ENST00000398074.3,ENST00000541323.1,ENST00000251630.6	chr8	17478559:17478711:17485995:17486289:17491582:17491722,	17485996	17486289	17486241	17486241	Frame_Shift_Del	G	-	p.A250fs
STAD	TCGA-BR-4184-01	PITPNC1	ENST00000578527.1,ENST00000580974.1,ENST00000299954.9	chr17	65671594:65671658:65683181:65683300:65688687:65689129,	65683182	65683300	65683214	65683214	Frame_Shift_Del	A	-	p.E238fs
STAD	TCGA-BR-4184-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331763	85331764	Frame_Shift_Ins	-	A	p.Y14fs
STAD	TCGA-BR-4184-01	EFCAB13	ENST00000331493.2,ENST00000517484.1	chr17	45471390:45471465:45473199:45473343:45479497:45479569,	45473200	45473343	45473297	45473297	Frame_Shift_Del	A	-	p.L633X
STAD	TCGA-BR-4184-01	NDUFA10	ENST00000443626.1	chr2	240929490:240929599:240946732:240946787:240957969:240958056,	240946733	240946787	240946781	240946781	Frame_Shift_Del	T	-	p.C253fs
STAD	TCGA-BR-4184-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509009	27509009	Frame_Shift_Del	T	-	p.S767fs
STAD	TCGA-BR-4184-01	XRCC5	ENST00000460284.1,ENST00000392133.3,ENST00000392132.2	chr2	217012805:217012999:217024790:217024884:217026701:217026771,	217024791	217024884	217024813	217024813	Frame_Shift_Del	A	-	p.A564fs
STAD	TCGA-BR-4184-01	ELOVL2	ENST00000354666.3	chr6	10990550:10990675:10995239:10995411:11000319:11000397,	10995240	10995411	10995330	10995330	Frame_Shift_Del	T	-	p.T139fs
STAD	TCGA-BR-4184-01	KPNA3	ENST00000261667.3	chr13	50276521:50276616:50279756:50279919:50280233:50280305,	50279757	50279919	50279819	50279819	Frame_Shift_Del	T	-	p.N437fs
STAD	TCGA-BR-4184-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108560	14108560	Frame_Shift_Del	A	-	p.K1423fs
STAD	TCGA-BR-4184-01	SEC22C	ENST00000264454.3,ENST00000423701.2,ENST00000273156.7	chr3	42605100:42605178:42610356:42610565:42623337:42623393,	42610357	42610565	42610466	42610466	Frame_Shift_Del	A	-	p.Y25fs
STAD	TCGA-BR-4184-01	DUSP11	ENST00000272444.3	chr2	73989720:73989986:73993544:73993721:73993954:73994020,	73993545	73993721	73993684	73993685	Frame_Shift_Ins	-	A	p.E266_D267delinsX
STAD	TCGA-BR-4184-01	SLC16A10	ENST00000368851.5	chr6	111498414:111498868:111527794:111527938:111540016:111540245,	111527795	111527938	111527826	111527826	Frame_Shift_Del	A	-	p.E325fs
STAD	TCGA-BR-4184-01	EML5	ENST00000380664.5,ENST00000554922.1	chr14	89153559:89153671:89154614:89154817:89160650:89160751,	89154615	89154817	89154769	89154769	Frame_Shift_Del	T	-	p.N863fs
STAD	TCGA-BR-4184-01	EPB41L1	ENST00000373950.2,ENST00000202028.5,ENST00000441639.1,ENST00000373941.1,ENST00000338074.2	chr20	34785801:34785963:34797409:34797820:34800193:34800298,	34797410	34797820	34797730	34797730	Frame_Shift_Del	G	-	p.K663fs
STAD	TCGA-BR-4184-01	PPP1R2	ENST00000438848.1,ENST00000328432.3	chr3	195243722:195243740:195245814:195245982:195250489:195250584,	195245815	195245982	195245976	195245976	Frame_Shift_Del	T	-	p.K137fs
STAD	TCGA-BR-4184-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14576873	14576874	Frame_Shift_Ins	-	A	p.Q8fs
STAD	TCGA-BR-4184-01	WWOX	ENST00000408984.3,ENST00000566780.1,ENST00000569332.1	chr16	78148872:78149051:78198079:78198186:79245504:79246564,78148872:78149051:78198079:78198186:78420756:78420845,	78198080	78198186	78198099	78198099	Frame_Shift_Del	T	-	p.S143fs
STAD	TCGA-BR-4184-01	CEACAM3	ENST00000357396.3,ENST00000415495.1,ENST00000221999.4	chr19	42314360:42314392:42314869:42314935:42315209:42315591,	42314870	42314935	42314895	42314895	Frame_Shift_Del	C	-	p.A218fs
STAD	TCGA-BR-4184-01	STK10	ENST00000176763.5	chr5	171509964:171510088:171517235:171517366:171520415:171520581,	171517236	171517366	171517345	171517345	Frame_Shift_Del	T	-	p.T526fs
STAD	TCGA-BR-4184-01	TUBE1	ENST00000604743.1,ENST00000368662.5,ENST00000604814.1	chr6	112395912:112396053:112397139:112397315:112397524:112397677,	112397140	112397315	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
STAD	TCGA-BR-4184-01	TUBE1	ENST00000605457.1	chr6	112395912:112396053:112397139:112397374:112397524:112397677,	112397140	112397374	112397206	112397206	Frame_Shift_Del	T	-	p.K249fs
STAD	TCGA-BR-4184-01	KIAA0586	ENST00000556134.1	chr14	58894119:58894355:58894989:58895181:58896080:58896151,	58894990	58895181	58895013	58895013	Frame_Shift_Del	A	-	p.K22fs
STAD	TCGA-BR-4184-01	DGKI	ENST00000446122.1,ENST00000424189.2,ENST00000288490.5	chr7	137128822:137128848:137148234:137148357:137150653:137150781,	137148235	137148357	137148245	137148245	Frame_Shift_Del	G	-	p.R917fs
STAD	TCGA-BR-4184-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124508	76124508	Frame_Shift_Del	T	-	p.T61fs
STAD	TCGA-BR-4184-01	TMEM41B	ENST00000524543.1,ENST00000299596.4,ENST00000533867.1,ENST00000528080.1	chr11	9305093:9305140:9308001:9308140:9309248:9309353,	9308002	9308140	9308018	9308018	Frame_Shift_Del	A	-	p.I231fs
STAD	TCGA-BR-4184-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151152385	151152386	Frame_Shift_Del	TT	-	p.713_713del
STAD	TCGA-BR-4184-01	FBXO5	ENST00000367241.3,ENST00000229758.3	chr6	153291663:153292549:153293406:153293589:153294180:153294271,	153293407	153293589	153293482	153293482	Frame_Shift_Del	T	-	p.D340fs
STAD	TCGA-BR-4184-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394427	64394428	Frame_Shift_Ins	-	A	p.K268fs
STAD	TCGA-BR-4184-01	ANKFN1	ENST00000566473.2,ENST00000318698.2	chr17	54535223:54535340:54543716:54543932:54554848:54555015,	54543717	54543932	54543825	54543825	Frame_Shift_Del	T	-	p.S558fs
STAD	TCGA-BR-4184-01	FMO5	ENST00000369272.3	chr1	146672733:146673086:146680413:146680613:146683960:146684103,146661755:146661828:146680413:146680613:146683960:146684103,	146680414	146680613	146680465	146680465	Frame_Shift_Del	T	-	p.K260fs
STAD	TCGA-BR-4184-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977650	99977650	Frame_Shift_Del	A	-	p.D95fs
STAD	TCGA-BR-4184-01	PDZD3	ENST00000534790.1,ENST00000322712.4,ENST00000529098.1,ENST00000527951.1,ENST00000531114.1,ENST00000527028.1,ENST00000392817.2,ENST00000525131.1,ENST00000355547.5	chr11	119057324:119057399:119057978:119058168:119058272:119058367,	119057979	119058168	119058146	119058146	Frame_Shift_Del	T	-	p.G166fs
STAD	TCGA-BR-4184-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389837	11389837	Frame_Shift_Del	A	-	p.W138fs
STAD	TCGA-BR-4184-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520470	49520470	Frame_Shift_Del	T	-	p.I22fs
STAD	TCGA-BR-4184-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131568	Frame_Shift_Del	AA	-	p.170_170del
STAD	TCGA-BR-4184-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32832521:32832710:32836514:32836649:32842791:32843943,	32836515	32836649	32836528	32836529	Frame_Shift_Ins	-	T	p.H4758fs
STAD	TCGA-BR-4184-01	BRPF3	ENST00000357641.6,ENST00000441730.2,ENST00000534400.1,ENST00000441123.1	chr6	36179224:36179337:36181656:36182163:36185693:36185787,	36181657	36182163	36181729	36181729	Frame_Shift_Del	C	-	p.S852fs
STAD	TCGA-BR-4184-01	SESN1	ENST00000302071.2,ENST00000368971.2,ENST00000356644.7,ENST00000436639.2	chr6	109314021:109314102:109315664:109315812:109319715:109319958,	109315665	109315812	109315692	109315692	Frame_Shift_Del	T	-	p.R365fs
STAD	TCGA-BR-4184-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87049313:87049391:87051436:87051541:87053221:87053368,	87051437	87051541	87051451	87051452	Frame_Shift_Ins	-	A	p.T768fs
STAD	TCGA-BR-4184-01	RNF144B	ENST00000259939.3	chr6	18387744:18387861:18399729:18399930:18427811:18427916,	18399730	18399930	18399838	18399839	Frame_Shift_Ins	-	C	p.A25fs
STAD	TCGA-BR-4184-01	PDCD6IP	ENST00000457054.2	chr3	33867971:33868072:33870329:33870461:33877535:33877664,	33870330	33870461	33870419	33870419	Frame_Shift_Del	A	-	p.A269fs
STAD	TCGA-BR-4184-01	PDCD6IP	ENST00000307296.3	chr3	33867971:33868072:33870344:33870461:33877535:33877664,	33870345	33870461	33870419	33870419	Frame_Shift_Del	A	-	p.A269fs
STAD	TCGA-BR-4184-01	BTF3L4	ENST00000472944.2	chr1	52522003:52522051:52530496:52530610:52549011:52549172,	52530497	52530610	52530571	52530571	Frame_Shift_Del	A	-	p.L43fs
STAD	TCGA-BR-4184-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000478340.1,ENST00000467020.1,ENST00000464112.1	chr6	35437212:35437306:35437955:35438128:35438356:35438417,	35437956	35438128	35437973	35437973	Frame_Shift_Del	T	-	p.A109fs
STAD	TCGA-BR-4184-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634230	84634231	Frame_Shift_Ins	-	A	p.Q245fs
STAD	TCGA-BR-4184-01	MORC1	ENST00000232603.5,ENST00000483760.1	chr3	108677691:108677967:108682260:108682455:108688515:108688569,	108682261	108682455	108682419	108682420	Frame_Shift_Del	TT	-	p.881_881del
STAD	TCGA-BR-4184-01	PTPN4	ENST00000433888.1	chr2	120672754:120672818:120677644:120677817:120684173:120684242,120672754:120672818:120677644:120677817:120689999:120690125,	120677645	120677817	120677773	120677773	Frame_Shift_Del	T	-	p.N319fs
STAD	TCGA-BR-4184-01	CCDC66	ENST00000422222.1,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000341455.6	chr3	56647638:56647778:56649155:56649300:56649949:56650081,	56649156	56649300	56649217	56649218	Frame_Shift_Del	CA	-	p.543_543del
STAD	TCGA-BR-4184-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000356696.3,ENST00000533034.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49178268:49178359:49179503:49179595:49186256:49186324,	49179504	49179595	49179535	49179535	Frame_Shift_Del	T	-	p.S501fs
STAD	TCGA-BR-4184-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680127	6680128	Frame_Shift_Ins	-	G	p.R136fs
STAD	TCGA-BR-4184-01	DLGAP4	ENST00000373913.3,ENST00000373907.2,ENST00000401952.2,ENST00000339266.5	chr20	35068156:35068271:35071129:35071180:35075099:35075340,	35071130	35071180	35071131	35071131	Frame_Shift_Del	T	-	p.I453fs
STAD	TCGA-BR-4184-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17637383:17638001:17640169:17640295:17646297:17646385,	17640170	17640295	17640225	17640225	Frame_Shift_Del	A	-	p.R598fs
STAD	TCGA-BR-4184-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.T1288fs
STAD	TCGA-BR-4184-01	BTBD7	ENST00000554565.1	chr14	93727947:93728023:93730130:93730339:93760203:93760274,93727947:93728023:93730130:93730339:93799165:93799367,	93730131	93730339	93730184	93730184	Frame_Shift_Del	A	-	p.Y440fs
STAD	TCGA-BR-4184-01	DNAJC7	ENST00000588814.1,ENST00000316603.7,ENST00000426588.3,ENST00000457167.4,ENST00000586335.1	chr17	40134001:40134025:40134272:40134419:40135580:40135654,	40134273	40134419	40134398	40134398	Frame_Shift_Del	T	-	p.N369fs
STAD	TCGA-BR-4184-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192536	211192537	Frame_Shift_Ins	-	G	p.P207fs
STAD	TCGA-BR-4184-01	KCNH1	ENST00000367007.4	chr1	211092981:211093411:211192205:211192598:211256121:211256240,	211192206	211192598	211192536	211192537	Frame_Shift_Ins	-	G	p.P207fs
STAD	TCGA-BR-4184-01	PUS10	ENST00000316752.6,ENST00000407787.1,ENST00000602599.1	chr2	61194636:61194748:61198657:61198692:61233691:61233778,	61198658	61198692	61198669	61198669	Frame_Shift_Del	T	-	p.Q165fs
STAD	TCGA-BR-4184-01	CDH17	ENST00000027335.3,ENST00000450165.2	chr8	95186024:95186224:95186329:95186488:95188768:95188907,	95186330	95186488	95186357	95186357	Frame_Shift_Del	T	-	p.T186fs
STAD	TCGA-BR-4184-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40795389	40795389	Frame_Shift_Del	T	-	p.K117fs
STAD	TCGA-BR-4184-01	EIF3H	ENST00000276682.4,ENST00000521861.1,ENST00000518995.1,ENST00000518949.1	chr8	117668143:117668244:117669453:117669553:117671051:117671219,	117669454	117669553	117669464	117669464	Frame_Shift_Del	A	-	p.S183fs
STAD	TCGA-BR-4184-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74310709:74310839:74313178:74313393:74315051:74315184,	74313179	74313393	74313372	74313372	Frame_Shift_Del	A	-	p.E346fs
STAD	TCGA-BR-4184-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752635	36752635	Frame_Shift_Del	C	-	p.S268fs
STAD	TCGA-BR-4184-01	PAM	ENST00000438793.3,ENST00000346918.2,ENST00000274392.9,ENST00000345721.2,ENST00000304400.7,ENST00000379787.4,ENST00000455264.2,ENST00000379799.3	chr5	102296867:102296933:102309819:102310140:102325975:102326105,	102309820	102310140	102309949	102309949	Frame_Shift_Del	A	-	p.Q431fs
STAD	TCGA-BR-4184-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334906	77334907	Frame_Shift_Ins	-	T	p.L924fs
STAD	TCGA-CG-4477-01	ACVR1B	ENST00000257963.4,ENST00000415850.2,ENST00000542485.1,ENST00000426655.2	chr12	52374752:52374983:52377782:52377950:52378975:52379132,	52377783	52377950	52377884	52377884	Frame_Shift_Del	A	-	p.M345fs
STAD	TCGA-CG-4477-01	STX10	ENST00000593126.1,ENST00000589083.1,ENST00000591197.1,ENST00000587318.1,ENST00000242770.5,ENST00000588848.1,ENST00000440593.3,ENST00000587230.1	chr19	13256116:13256209:13259842:13259905:13260312:13260407,	13259843	13259905	13259888	13259889	Frame_Shift_Ins	-	ATAT	p.M106fs
STAD	TCGA-CG-4477-01	RBM27	ENST00000265271.5	chr5	145650516:145650621:145651045:145651237:145664184:145664295,	145651046	145651237	145651186	145651187	Frame_Shift_Ins	-	GTTGGAG	p.T979fs
STAD	TCGA-CG-4477-01	AGER	ENST00000438221.2,ENST00000375065.5,ENST00000375076.4,ENST00000488669.1,ENST00000375070.3,ENST00000375055.2,ENST00000473619.1,ENST00000484849.1	chr6	32149382:32149409:32150023:32150165:32150344:32150455,	32150024	32150165	32150159	32150160	Frame_Shift_Ins	-	CA	p.P293fs
STAD	TCGA-CG-4477-01	TMCO6	ENST00000252100.6,ENST00000510336.1,ENST00000514449.1,ENST00000394671.3	chr5	140021249:140021365:140021454:140021638:140021899:140021998,	140021455	140021638	140021540	140021541	Frame_Shift_Ins	-	AGCT	p.E134fs
STAD	TCGA-CG-4477-01	WDR88	ENST00000355868.3,ENST00000361680.2	chr19	33642086:33642216:33647260:33647448:33651319:33651402,	33647261	33647448	33647447	33647448	Frame_Shift_Ins	-	CA	p.D332fs
STAD	TCGA-CG-4477-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981535	201981536	Frame_Shift_Ins	-	C	p.F150fs
STAD	TCGA-CG-4477-01	G6PD	ENST00000440967.1,ENST00000439227.1	chrX	153762250:153762375:153762552:153762714:153763382:153763600,	153762553	153762714	153762645	153762652	Frame_Shift_Del	GGACAGCC	-	p.212_215del
STAD	TCGA-CG-4477-01	G6PD	ENST00000393562.2,ENST00000393564.2,ENST00000433845.1,ENST00000369620.2	chrX	153762250:153762375:153762552:153762711:153763382:153763600,	153762553	153762711	153762645	153762652	Frame_Shift_Del	GGACAGCC	-	p.212_215del
STAD	TCGA-CG-4477-01	HKDC1	ENST00000395086.2	chr10	70980058:70980254:70986962:70987125:70992519:70992668,	70986963	70987125	70986987	70986988	Frame_Shift_Ins	-	GGCT	p.R30fs
STAD	TCGA-CG-4477-01	CLTC	ENST00000269122.3,ENST00000393043.1,ENST00000466513.1	chr17	57743463:57743601:57743840:57744005:57744157:57744338,	57743841	57744005	57743978	57743978	Frame_Shift_Del	G	-	p.V640fs
STAD	TCGA-CG-4477-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000458012.2,ENST00000537335.1,ENST00000333990.6,ENST00000448770.1,ENST00000263331.5,ENST00000417433.2	chr2	113330218:113330335:113331138:113331392:113332423:113332666,	113331139	113331392	113331234	113331235	Frame_Shift_Ins	-	A	p.D789fs
STAD	TCGA-CG-4477-01	F10	ENST00000477269.1,ENST00000409306.1,ENST00000375559.3,ENST00000375551.3	chr13	113793670:113793784:113795232:113795364:113798164:113798409,	113795233	113795364	113795276	113795277	Frame_Shift_Del	GT	-	p.138_138del
STAD	TCGA-CG-4477-01	F10	ENST00000410083.2	chr13	113793670:113793784:113794880:113795364:113798164:113798409,	113794881	113795364	113795276	113795277	Frame_Shift_Del	GT	-	p.138_138del
STAD	TCGA-CG-4477-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578183	7578187	Frame_Shift_Del	CGGCT	-	p.221_223del
STAD	TCGA-CG-4477-01	LZIC	ENST00000377213.1,ENST00000541052.1,ENST00000377223.1,ENST00000400903.2	chr1	9992860:9992956:9994819:9994918:9995549:9995678,	9994820	9994918	9994876	9994876	Frame_Shift_Del	C	-	p.V94fs
STAD	TCGA-CG-4477-01	ITGA9	ENST00000264741.5	chr3	37818882:37819008:37821392:37821512:37826467:37826569,	37821393	37821512	37821476	37821477	Frame_Shift_Ins	-	ATTT	p.D917fs
STAD	TCGA-CG-4442-01	BAIAP2L2	ENST00000381669.3,ENST00000332536.5	chr22	38494417:38494489:38503858:38503920:38504261:38504348,	38503859	38503920	38503898	38503899	Frame_Shift_Del	AG	-	p.79_80del
STAD	TCGA-CG-4442-01	PPP1R7	ENST00000473017.1	chr2	242089910:242089962:242092897:242093019:242097221:242097277,	242092898	242093019	242092999	242092999	Frame_Shift_Del	G	-	p.R54fs
STAD	TCGA-CG-4442-01	PPP1R7	ENST00000498170.1,ENST00000406106.3,ENST00000234038.6,ENST00000439916.1,ENST00000404405.3,ENST00000407025.1	chr2	242089910:242089962:242092890:242093019:242097221:242097277,	242092891	242093019	242092999	242092999	Frame_Shift_Del	G	-	p.R54fs
STAD	TCGA-CG-4442-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986251	2986251	Frame_Shift_Del	A	-	p.G21fs
STAD	TCGA-CG-4442-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044069	108044069	Frame_Shift_Del	T	-	p.S548fs
STAD	TCGA-CG-4442-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577801	14577802	Frame_Shift_Ins	-	A	p.E318fs
STAD	TCGA-CG-4442-01	PKD2	ENST00000508588.1,ENST00000502363.1,ENST00000237596.2	chr4	88977237:88977419:88979134:88979255:88983057:88983156,	88979135	88979255	88979251	88979251	Frame_Shift_Del	T	-	p.L672fs
STAD	TCGA-CG-4442-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793161	42793162	Frame_Shift_Ins	-	C	p.R351fs
STAD	TCGA-CG-4442-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000445419.2,ENST00000505222.1,ENST00000503631.1	chr6	82883083:82883155:82891595:82891745:82900789:82900933,	82891596	82891745	82891683	82891683	Frame_Shift_Del	T	-	p.K1213fs
STAD	TCGA-CG-4442-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.285_285del
STAD	TCGA-CG-4442-01	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135286117:135286255:135287552:135287742:135289087:135289208,	135287553	135287742	135287555	135287555	Frame_Shift_Del	A	-	p.G838fs
STAD	TCGA-CG-4442-01	SPG7	ENST00000561911.1,ENST00000268704.2	chr16	89614410:89614521:89616901:89617017:89619386:89619487,	89616902	89617017	89616910	89616910	Frame_Shift_Del	A	-	p.A557fs
STAD	TCGA-CG-4442-01	CHCHD7	ENST00000523975.1,ENST00000396723.5,ENST00000355315.3,ENST00000303759.3,ENST00000518944.1	chr8	57127156:57127226:57128991:57129090:57129889:57129971,	57128992	57129090	57129070	57129070	Frame_Shift_Del	A	-	p.Y69X
STAD	TCGA-CG-4442-01	CHCHD7	ENST00000522166.1,ENST00000521831.1,ENST00000518801.1,ENST00000519367.1	chr8	57127156:57127226:57128947:57129090:57129889:57129971,	57128948	57129090	57129070	57129070	Frame_Shift_Del	A	-	p.Y69X
STAD	TCGA-CG-4442-01	KIF5C	ENST00000464066.1,ENST00000414838.2,ENST00000435030.1,ENST00000397413.1,ENST00000482151.1	chr2	149857235:149857296:149861906:149861978:149864476:149864581,	149861907	149861978	149861973	149861973	Frame_Shift_Del	A	-	p.V813fs
STAD	TCGA-CG-4442-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176204	63176205	Frame_Shift_Ins	-	A	p.K776fs
STAD	TCGA-CG-4442-01	RECQL5	ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73624751:73624842:73625013:73625555:73625787:73625922,	73625014	73625555	73625328	73625328	Frame_Shift_Del	C	-	p.P726fs
STAD	TCGA-CG-4442-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20445684:20445794:20449237:20449401:20449497:20449607,	20449238	20449401	20449395	20449395	Frame_Shift_Del	A	-	p.S727X
STAD	TCGA-CG-4442-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
STAD	TCGA-CG-4442-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073232	197073232	Frame_Shift_Del	T	-	p.I1717fs
STAD	TCGA-CG-4442-01	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381022.2	chr9	13123151:13123297:13125214:13125389:13126514:13126589,	13125215	13125389	13125277	13125277	Frame_Shift_Del	T	-	p.K1582fs
STAD	TCGA-CG-4442-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.H30fs
STAD	TCGA-CG-4442-01	EDNRB	ENST00000334286.5,ENST00000377211.4	chr13	78469623:78472469:78473993:78474102:78474655:78474789,	78473994	78474102	78474004	78474004	Frame_Shift_Del	T	-	p.N485fs
STAD	TCGA-CG-4442-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-CG-4442-01	CENPH	ENST00000514753.1,ENST00000283006.2	chr5	68490473:68490522:68491543:68491618:68498332:68498396,68490473:68490522:68491543:68491618:68492879:68492936,	68491544	68491618	68491597	68491598	Frame_Shift_Ins	-	A	p.I98fs
STAD	TCGA-CG-4442-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226923855	226923855	Frame_Shift_Del	C	-	p.R436fs
STAD	TCGA-CG-4442-01	NMD3	ENST00000472947.1,ENST00000351193.2,ENST00000460469.1	chr3	160960295:160960441:160964123:160964236:160965045:160965118,	160964124	160964236	160964183	160964183	Frame_Shift_Del	T	-	p.Y359fs
STAD	TCGA-CG-4442-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562545	32562545	Frame_Shift_Del	T	-	p.D890fs
STAD	TCGA-CG-4442-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345195	23345195	Frame_Shift_Del	T	-	p.K58fs
STAD	TCGA-CG-4442-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448019	155448019	Frame_Shift_Del	T	-	p.S1548fs
STAD	TCGA-CG-4442-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022426	11022426	Frame_Shift_Del	A	-	p.P180fs
STAD	TCGA-CG-4442-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000507620.1	chr3	142215975:142216034:142217438:142217616:142218468:142218560,	142217439	142217616	142217557	142217557	Frame_Shift_Del	T	-	p.R1814fs
STAD	TCGA-CG-4442-01	FKBP8	ENST00000453489.2,ENST00000222308.4,ENST00000596558.2	chr19	18648410:18648583:18649025:18649243:18650180:18650258,	18649026	18649243	18649226	18649226	Frame_Shift_Del	G	-	p.P191fs
STAD	TCGA-CG-4442-01	FKBP8	ENST00000608443.1,ENST00000601844.1,ENST00000597960.3	chr19	18648410:18648583:18649025:18649246:18650180:18650258,	18649026	18649246	18649226	18649226	Frame_Shift_Del	G	-	p.P191fs
STAD	TCGA-CG-4442-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.A150fs
STAD	TCGA-CG-4442-01	SPATA5	ENST00000422835.2,ENST00000274008.4	chr4	123857254:123857311:123859280:123859404:123868387:123868643,	123859281	123859404	123859335	123859335	Frame_Shift_Del	G	-	p.E463fs
STAD	TCGA-CG-4442-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77413116	77413116	Frame_Shift_Del	T	-	p.R387fs
STAD	TCGA-CG-4442-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406040	91406040	Frame_Shift_Del	T	-	p.R291fs
STAD	TCGA-CG-4442-01	CTSK	ENST00000271651.3,ENST00000443913.1	chr1	150778336:150778492:150778577:150778700:150779161:150779244,	150778578	150778700	150778663	150778663	Frame_Shift_Del	T	-	p.N53fs
STAD	TCGA-CG-4442-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562675	32562675	Frame_Shift_Del	T	-	p.L933fs
STAD	TCGA-CG-4442-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.M2803fs
STAD	TCGA-CG-4442-01	IGFBP7	ENST00000295666.4,ENST00000512512.1	chr4	57896938:57897502:57898591:57898718:57899360:57899477,	57898592	57898718	57898593	57898593	Frame_Shift_Del	T	-	p.G277fs
STAD	TCGA-CG-4442-01	FAM86B1	ENST00000529060.1	chr8	12043004:12043034:12047316:12047397:12049287:12049322,12044208:12044342:12047316:12047397:12049287:12049322,12045819:12045933:12047316:12047397:12049287:12049322,	12047317	12047397	12047374	12047375	Frame_Shift_Del	CA	-	p.61_62del
STAD	TCGA-CG-4442-01	GPR137	ENST00000377702.4	chr11	64054436:64054486:64055192:64055418:64055536:64055561,64054448:64054486:64055192:64055418:64055811:64055940,	64055193	64055418	64055217	64055217	Frame_Shift_Del	G	-	p.V202fs
STAD	TCGA-CG-4442-01	NADSYN1	ENST00000530055.1,ENST00000525200.1,ENST00000539574.1,ENST00000319023.2,ENST00000529840.1,ENST00000527852.1	chr11	71192401:71192450:71192968:71193071:71193894:71194032,	71192969	71193071	71192975	71192975	Frame_Shift_Del	T	-	p.G351fs
STAD	TCGA-CG-4442-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669231	95669231	Frame_Shift_Del	G	-	p.H819fs
STAD	TCGA-CG-4442-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72396799:72397015:72397339:72397501:72398922:72399003,	72397340	72397501	72397426	72397427	Frame_Shift_Ins	-	C	p.L51fs
STAD	TCGA-CG-4442-01	OGFOD1	ENST00000336111.5,ENST00000566157.1	chr16	56500787:56500879:56501076:56501205:56501816:56501930,	56501077	56501205	56501170	56501170	Frame_Shift_Del	C	-	p.E250fs
STAD	TCGA-CG-4442-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107635331:107635405:107638801:107638937:107642002:107642178,	107638802	107638937	107638926	107638926	Frame_Shift_Del	T	-	p.C76fs
STAD	TCGA-CG-4442-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944121	8944121	Frame_Shift_Del	T	-	p.T371fs
STAD	TCGA-CG-4442-01	DENND6A	ENST00000311128.5	chr3	57616651:57616705:57618991:57619081:57620284:57620349,	57618992	57619081	57619023	57619023	Frame_Shift_Del	A	-	p.L441fs
STAD	TCGA-CG-4442-01	BLZF1	ENST00000367808.3,ENST00000329281.2	chr1	169349718:169349847:169351299:169351519:169356234:169356447,	169351300	169351519	169351458	169351458	Frame_Shift_Del	A	-	p.Q319fs
STAD	TCGA-CG-4442-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629513	118629513	Frame_Shift_Del	T	-	p.V322fs
STAD	TCGA-CG-4442-01	SMARCA5	ENST00000283131.3	chr4	144466622:144466736:144467077:144467200:144467928:144468061,	144467078	144467200	144467118	144467118	Frame_Shift_Del	A	-	p.Q813fs
STAD	TCGA-CG-4442-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
STAD	TCGA-CG-4442-01	RECQL4	ENST00000532237.1,ENST00000532269.1,ENST00000428558.2,ENST00000532846.2	chr8	145740709:145740841:145741147:145741274:145741371:145741387,	145741148	145741274	145741231	145741231	Frame_Shift_Del	C	-	p.G392fs
STAD	TCGA-CG-4442-01	EML5	ENST00000553973.1,ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89082161:89082198:89082485:89082586:89083069:89083223,	89082486	89082586	89082573	89082574	Frame_Shift_Ins	-	T	p.R1937fs
STAD	TCGA-CG-4442-01	DNAH5	ENST00000265104.4	chr5	13841800:13842013:13844945:13845102:13850760:13850924,	13844946	13845102	13845086	13845087	Frame_Shift_Ins	-	T	p.R1711fs
STAD	TCGA-CG-4442-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123842738	123842738	Frame_Shift_Del	G	-	p.Q241fs
STAD	TCGA-CG-4442-01	GAK	ENST00000511980.1	chr4	844723:844872:845537:845762:853393:853510,844723:844872:845537:845762:853149:853281,	845538	845762	845556	845556	Frame_Shift_Del	C	-	p.V1164fs
STAD	TCGA-CG-4442-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
STAD	TCGA-CG-4442-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487781	Frame_Shift_Del	C	-	p.H2348fs
STAD	TCGA-CG-4442-01	TRIT1	ENST00000495175.2,ENST00000441669.2,ENST00000316891.5,ENST00000492612.2,ENST00000545233.1	chr1	40310202:40310312:40312891:40312969:40348989:40349152,40310202:40310312:40312891:40312969:40313219:40313328,	40312892	40312969	40312897	40312897	Frame_Shift_Del	A	-	p.L334fs
STAD	TCGA-CG-4442-01	APEH	ENST00000447541.1,ENST00000296456.5,ENST00000482301.1,ENST00000447436.1,ENST00000446089.1,ENST00000442186.1,ENST00000438011.1	chr3	49714209:49714250:49714335:49714457:49715005:49715066,	49714336	49714457	49714427	49714427	Frame_Shift_Del	C	-	p.I323fs
STAD	TCGA-CG-4442-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310573	103310573	Frame_Shift_Del	C	-	p.E591fs
STAD	TCGA-CG-4442-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16162012:16162159:16165498:16165586:16170182:16170258,	16165499	16165586	16165586	16165587	Frame_Shift_Ins	-	GT	p.G638fs
STAD	TCGA-CG-4442-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19955586	19955586	Frame_Shift_Del	C	-	p.S355fs
STAD	TCGA-CG-4442-01	HMGA2	ENST00000536545.1,ENST00000537275.1,ENST00000537429.1,ENST00000354636.3,ENST00000541363.1,ENST00000393578.3,ENST00000393577.3,ENST00000425208.2	chr12	66218902:66219161:66221780:66221867:66232298:66232349,	66221781	66221867	66221835	66221835	Frame_Shift_Del	A	-	p.S55fs
STAD	TCGA-CG-4442-01	PARP4	ENST00000381989.3	chr13	25029154:25029350:25030478:25030616:25033181:25033260,	25030479	25030616	25030500	25030500	Frame_Shift_Del	T	-	p.H848fs
STAD	TCGA-CG-4442-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789283	150789283	Frame_Shift_Del	G	-	p.R595fs
STAD	TCGA-CG-4442-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023941	64023941	Frame_Shift_Del	T	-	p.R91fs
STAD	TCGA-HU-A4HD-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.V73fs
STAD	TCGA-BR-6566-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328259	40328259	Frame_Shift_Del	C	-	p.S215fs
STAD	TCGA-BR-6566-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646085	215646085	Frame_Shift_Del	T	-	p.D172fs
STAD	TCGA-BR-6566-01	POLG2	ENST00000539111.2,ENST00000581355.1	chr17	62479035:62479116:62481844:62481985:62486912:62487086,	62481845	62481985	62481966	62481966	Frame_Shift_Del	T	-	p.N330fs
STAD	TCGA-BR-6566-01	MOSPD2	ENST00000482354.1,ENST00000380492.3,ENST00000495110.1	chrX	14932624:14932721:14933789:14933886:14934318:14934448,	14933790	14933886	14933883	14933883	Frame_Shift_Del	G	-	p.H394fs
STAD	TCGA-BR-6566-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107571801:107571945:107572618:107572822:107575859:107576101,	107572619	107572822	107572748	107572751	Frame_Shift_Del	TCCT	-	p.1421_1422del
STAD	TCGA-BR-6566-01	LAMB1	ENST00000474380.1	chr7	107571801:107571945:107572618:107572938:107575859:107576101,	107572619	107572938	107572748	107572751	Frame_Shift_Del	TCCT	-	p.1421_1422del
STAD	TCGA-BR-6566-01	SMC6	ENST00000402989.1,ENST00000446852.1,ENST00000448223.2,ENST00000351948.4,ENST00000381272.4	chr2	17884423:17884559:17888485:17888646:17889905:17890020,	17888486	17888646	17888597	17888597	Frame_Shift_Del	T	-	p.N632fs
STAD	TCGA-BR-6566-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1,ENST00000417329.1	chr1	179609513:179609580:179620001:179620202:179621173:179621332,	179620002	179620202	179620102	179620102	Frame_Shift_Del	T	-	p.I634fs
STAD	TCGA-BR-6566-01	CSAG1	ENST00000361211.5	chrX	151904458:151904518:151908770:151908928:151909138:151909515,	151908771	151908928	151908802	151908803	Frame_Shift_Ins	-	G	p.L14fs
STAD	TCGA-BR-6566-01	CSAG1	ENST00000370287.3,ENST00000452779.2	chrX	151904458:151904518:151908777:151908928:151909138:151909515,	151908778	151908928	151908802	151908803	Frame_Shift_Ins	-	G	p.L14fs
STAD	TCGA-BR-6566-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838298	42838298	Frame_Shift_Del	G	-	p.W164fs
STAD	TCGA-BR-6566-01	ACSL5	ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000354655.4	chr10	114168179:114168279:114169264:114169443:114170220:114170253,	114169265	114169443	114169370	114169371	Frame_Shift_Ins	-	C	p.D269fs
STAD	TCGA-BR-6566-01	BTAF1	ENST00000265990.6,ENST00000544642.1	chr10	93757359:93757508:93767879:93768032:93768585:93768707,	93767880	93768032	93767970	93767970	Frame_Shift_Del	A	-	p.G1250fs
STAD	TCGA-BR-6566-01	KIRREL2	ENST00000360202.5,ENST00000262625.7,ENST00000347900.6,ENST00000586102.3,ENST00000592409.1	chr19	36349309:36349459:36349605:36349766:36350382:36350433,	36349606	36349766	36349618	36349618	Frame_Shift_Del	C	-	p.A125fs
STAD	TCGA-BR-6566-01	ITGB4	ENST00000579662.1,ENST00000200181.3,ENST00000449880.2,ENST00000450894.3,ENST00000339591.3	chr17	73744921:73745126:73746191:73746349:73746760:73746871,	73746192	73746349	73746239	73746239	Frame_Shift_Del	C	-	p.P1121fs
STAD	TCGA-BR-6566-01	INTS3	ENST00000476843.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000480659.1,ENST00000512605.1,ENST00000481797.1	chr1	153727117:153727215:153730047:153730239:153732001:153732089,	153730048	153730239	153730152	153730153	Frame_Shift_Ins	-	G	p.C354fs
STAD	TCGA-BR-6566-01	KCNK4	ENST00000539216.1,ENST00000394525.2,ENST00000422670.2	chr11	64064349:64064473:64064590:64064751:64064938:64065125,	64064591	64064751	64064615	64064615	Frame_Shift_Del	C	-	p.T113fs
STAD	TCGA-BR-6566-01	FAM133B	ENST00000438306.1,ENST00000415397.2,ENST00000427372.1,ENST00000481407.1,ENST00000445716.1,ENST00000492686.1	chr7	92207632:92207707:92208630:92208709:92210819:92210917,	92208631	92208709	92208639	92208639	Frame_Shift_Del	T	-	p.M65fs
STAD	TCGA-BR-6566-01	CDK13	ENST00000181839.4,ENST00000340829.5	chr7	40102424:40102526:40102621:40102699:40117603:40117720,	40102622	40102699	40102647	40102647	Frame_Shift_Del	A	-	p.T909fs
STAD	TCGA-BR-6566-01	MYRF	ENST00000278836.5,ENST00000265460.5	chr11	61533096:61533184:61533429:61533693:61536731:61536786,	61533430	61533693	61533569	61533569	Frame_Shift_Del	C	-	p.P91fs
STAD	TCGA-BR-6566-01	DNAJC2	ENST00000475065.1,ENST00000249270.7,ENST00000454277.1,ENST00000379263.3,ENST00000379257.3	chr7	102964044:102964110:102964928:102965009:102966989:102967131,	102964929	102965009	102964991	102964992	Frame_Shift_Ins	-	T	p.N197fs
STAD	TCGA-BR-6566-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898184	53898184	Frame_Shift_Del	C	-	p.S142fs
STAD	TCGA-FP-8211-01	KIAA1841	ENST00000453873.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61319598:61319722:61324834:61324987:61330987:61331088,	61324835	61324987	61324903	61324913	Frame_Shift_Del	AAGTTCATTGA	-	p.427_430del
STAD	TCGA-FP-8211-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717665	89717666	Frame_Shift_Ins	-	C	p.G230fs
STAD	TCGA-FP-8211-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016973	1016974	Frame_Shift_Del	GT	-	p.1943_1943del
STAD	TCGA-HU-A4GH-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93247438:93247535:93250956:93251064,	93247439	93247535	93247480	93247481	Frame_Shift_Ins	-	A	p.A379fs
STAD	TCGA-HU-A4GH-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20119122:20119291:20122482:20122718:20124800:20124955,	20122483	20122718	20122681	20122681	Frame_Shift_Del	T	-	p.V2186fs
STAD	TCGA-CG-5732-01	SPINK5	ENST00000481286.1,ENST00000398454.1,ENST00000476608.1,ENST00000256084.7,ENST00000508733.1,ENST00000507988.1,ENST00000359874.3	chr5	147473916:147474044:147475380:147475468:147477429:147477557,	147475381	147475468	147475439	147475440	Frame_Shift_Ins	-	A	p.E285fs
STAD	TCGA-HU-A4GT-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204210502:204210609:204210812:204210942:204213991:204214131,	204210813	204210942	204210879	204210880	Frame_Shift_Ins	-	G	p.R746fs
STAD	TCGA-HU-A4GT-01	PRSS16	ENST00000475106.1	chr6	27218524:27218585:27218820:27218898:27218995:27219043,27218524:27218585:27218820:27218898:27220586:27220728,	27218821	27218898	27218823	27218823	Frame_Shift_Del	C	-	p.F198fs
STAD	TCGA-HU-A4GT-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	AA	p.A201fs
STAD	TCGA-HU-A4GT-01	CNTROB	ENST00000380255.3,ENST00000576536.1,ENST00000563694.1	chr17	7851474:7851645:7851804:7851937:7852402:7852455,	7851805	7851937	7851880	7851880	Frame_Shift_Del	G	-	p.W819fs
STAD	TCGA-HU-A4GT-01	CNTROB	ENST00000380262.3	chr17	7851474:7851645:7851804:7852003:7852402:7852455,	7851805	7852003	7851880	7851880	Frame_Shift_Del	G	-	p.W819fs
STAD	TCGA-HU-A4GT-01	ITGA7	ENST00000394230.2,ENST00000257880.7,ENST00000553804.1,ENST00000555728.1,ENST00000347027.6,ENST00000257879.6,ENST00000394229.2,ENST00000452168.2	chr12	56091721:56091810:56092166:56092360:56092493:56092677,	56092167	56092360	56092301	56092301	Frame_Shift_Del	C	-	p.G357fs
STAD	TCGA-HU-A4GT-01	MED25	ENST00000312865.6,ENST00000538643.1	chr19	50333767:50333855:50333950:50334144:50334589:50334718,	50333951	50334144	50333994	50333995	Frame_Shift_Ins	-	C	p.G317fs
STAD	TCGA-HU-A4GT-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698177	2698177	Frame_Shift_Del	A	-	p.P852fs
STAD	TCGA-HU-A4GT-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118495649:118495775:118498020:118499366:118501923:118502196,	118498021	118499366	118498911	118498911	Frame_Shift_Del	C	-	p.L457fs
STAD	TCGA-HU-A4GT-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32458630:32459056:32480394:32481489:32487449:32487601,	32480395	32481489	32480462	32480463	Frame_Shift_Ins	-	G	p.K358fs
STAD	TCGA-HU-A4GT-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299981	107299981	Frame_Shift_Del	T	-	p.N326fs
STAD	TCGA-HU-A4GT-01	SCAMP2	ENST00000562363.1	chr15	75144409:75144527:75146361:75146460:75165539:75165643,	75146362	75146460	75146364	75146364	Frame_Shift_Del	G	-	p.Q75fs
STAD	TCGA-HU-A4GT-01	RELT	ENST00000393580.2,ENST00000539134.1,ENST00000064780.2	chr11	73105521:73105779:73106131:73106330:73106488:73107685,	73106132	73106330	73106249	73106249	Frame_Shift_Del	C	-	p.L388fs
STAD	TCGA-HU-A4GT-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300216	101300216	Frame_Shift_Del	T	-	p.R63fs
STAD	TCGA-HU-A4GT-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3,ENST00000491632.1,ENST00000444620.1	chr1	235344899:235346108:235357327:235357526:235359345:235359430,	235357328	235357526	235357476	235357477	Frame_Shift_Ins	-	T	p.N659fs
STAD	TCGA-HU-A4GT-01	NRP2	ENST00000412873.2,ENST00000540841.1,ENST00000540178.1,ENST00000272849.3,ENST00000357118.4,ENST00000357785.5,ENST00000360409.3	chr2	206617558:206617699:206628397:206628660:206630197:206630294,	206628398	206628660	206628531	206628532	Frame_Shift_Ins	-	G	p.R726fs
STAD	TCGA-HU-A4GT-01	DMPK	ENST00000458663.2,ENST00000600757.1,ENST00000596686.1	chr19	46274228:46274318:46274607:46274654:46274825:46274923,46274228:46274314:46274607:46274654:46274825:46274923,	46274608	46274654	46274622	46274628	Frame_Shift_Del	CCGTGGC	-	p.553_555del
STAD	TCGA-HU-A4GT-01	MRO	ENST00000590988.1,ENST00000431965.2,ENST00000588444.1,ENST00000592966.1	chr18	48327718:48327874:48331523:48331706:48333073:48333156,48326416:48326513:48331523:48331706:48333073:48333156,	48331524	48331706	48331583	48331584	Frame_Shift_Ins	-	C	p.K138fs
STAD	TCGA-HU-A4GT-01	TFF3	ENST00000398431.2	chr21	43732162:43732379:43733594:43733785:43735402:43735446,	43733595	43733785	43733676	43733677	Frame_Shift_Ins	-	G	p.K64fs
STAD	TCGA-HU-A4GT-01	TFF3	ENST00000291525.10	chr21	43732162:43732379:43733594:43733741:43735402:43735446,	43733595	43733741	43733676	43733677	Frame_Shift_Ins	-	G	p.K64fs
STAD	TCGA-HU-A4GT-01	IPO9	ENST00000361565.4,ENST00000464348.1	chr1	201816679:201816766:201817520:201817722:201821231:201821320,	201817521	201817722	201817522	201817523	Frame_Shift_Ins	-	A	p.A105fs
STAD	TCGA-HU-A4GT-01	ZNF517	ENST00000528012.1	chr8	146028287:146028332:146029025:146029152:146029509:146029623,146028272:146028332:146029025:146029152:146029530:146029623,	146029026	146029152	146029087	146029087	Frame_Shift_Del	C	-	p.A32fs
STAD	TCGA-HU-A4GT-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102847	61102848	Frame_Shift_Ins	-	A	p.F496fs
STAD	TCGA-HU-A4GT-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232950	19232950	Frame_Shift_Del	A	-	p.S467X
STAD	TCGA-HU-A4GT-01	MAPT	ENST00000570299.1,ENST00000334239.8,ENST00000446361.3	chr17	43972039:43972052:44039686:44039836:44049224:44049311,43972039:43972052:44039686:44039836:44055740:44055791,	44039687	44039836	44039781	44039781	Frame_Shift_Del	G	-	p.Q26fs
STAD	TCGA-HU-A4GT-01	BBS7	ENST00000264499.4,ENST00000506636.1	chr4	122749773:122749883:122754385:122754550:122756298:122756438,	122754386	122754550	122754483	122754483	Frame_Shift_Del	A	-	p.C527fs
STAD	TCGA-HU-A4GT-01	SLC41A3	ENST00000315891.6,ENST00000512557.1,ENST00000346785.5	chr3	125725215:125725407:125725956:125726068:125727574:125727723,	125725957	125726068	125725966	125725966	Frame_Shift_Del	C	-	p.D453fs
STAD	TCGA-HU-A4GT-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
STAD	TCGA-HU-A4GT-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000597793.1,ENST00000598325.1,ENST00000601093.1	chr19	50363350:50363440:50363524:50363593:50363870:50363982,	50363525	50363593	50363526	50363527	Frame_Shift_Ins	-	G	p.M414fs
STAD	TCGA-HU-A4GT-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.A150fs
STAD	TCGA-HU-A4GT-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232258	132232258	Frame_Shift_Del	A	-	p.R689fs
STAD	TCGA-HU-A4GT-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145773476	145773476	Frame_Shift_Del	C	-	p.V332fs
STAD	TCGA-HU-A4GT-01	TTLL3	ENST00000427220.1	chr3	9857757:9857886:9859328:9859443:9860238:9860604,	9859329	9859443	9859427	9859428	Frame_Shift_Ins	-	A	p.D281fs
STAD	TCGA-HU-A4GT-01	ITGAL	ENST00000563615.1,ENST00000358164.5,ENST00000356798.6	chr16	30516709:30516783:30518035:30518177:30521681:30521716,	30518036	30518177	30518138	30518138	Frame_Shift_Del	C	-	p.F823fs
STAD	TCGA-HU-A4GT-01	VPS35	ENST00000568784.2,ENST00000299138.7	chr16	46693588:46694563:46695629:46695773:46696154:46696394,	46695630	46695773	46695735	46695735	Frame_Shift_Del	T	-	p.A703fs
STAD	TCGA-HU-A4GT-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977673	99977674	Frame_Shift_Ins	-	A	p.G103fs
STAD	TCGA-HU-A4GT-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5	chr1	150530420:150530625:150530948:150531125:150531437:150531641,	150530949	150531125	150531044	150531044	Frame_Shift_Del	C	-	p.G826fs
STAD	TCGA-HU-A4GT-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Frame_Shift_Del	A	-	p.L474X
STAD	TCGA-HU-A4GT-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Frame_Shift_Del	A	-	p.L474X
STAD	TCGA-HU-A4GT-01	KMO	ENST00000366555.5,ENST00000366559.4	chr1	241752074:241752132:241753313:241753415:241753505:241753565,	241753314	241753415	241753345	241753345	Frame_Shift_Del	T	-	p.I377fs
STAD	TCGA-HU-A4GT-01	MTTP	ENST00000515141.1,ENST00000457717.1	chr4	100485239:100485394:100495965:100496127:100503061:100503129,	100495966	100496127	100496086	100496086	Frame_Shift_Del	T	-	p.L7fs
STAD	TCGA-HU-A4GT-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76814139:76814317:76829714:76829823:76845303:76845410,	76829715	76829823	76829815	76829816	Frame_Shift_Ins	-	C	p.K2076fs
STAD	TCGA-HU-A4GT-01	TCF7L2	ENST00000346198.4,ENST00000355717.4	chr10	114799783:114799885:114849158:114849299:114900942:114901075,	114849159	114849299	114849206	114849206	Frame_Shift_Del	C	-	p.Y177fs
STAD	TCGA-HU-A4GT-01	TCF7L2	ENST00000369395.1	chr10	114799783:114799885:114849155:114849299:114900942:114901075,	114849156	114849299	114849206	114849206	Frame_Shift_Del	C	-	p.Y177fs
STAD	TCGA-HU-A4GT-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47822244:47822397:47831102:47831981:47832750:47832906,	47831103	47831981	47831672	47831673	Frame_Shift_Ins	-	T	p.L1895fs
STAD	TCGA-HU-A4GT-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847355	28847356	Frame_Shift_Ins	-	C	p.G999fs
STAD	TCGA-HU-A4GT-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847355	28847356	Frame_Shift_Ins	-	C	p.G999fs
STAD	TCGA-HU-A4GT-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847355	28847356	Frame_Shift_Ins	-	C	p.G999fs
STAD	TCGA-HU-A4GT-01	DBP	ENST00000222122.5	chr19	49133987:49134309:49136700:49136912:49138836:49139247,	49136701	49136912	49136724	49136724	Frame_Shift_Del	T	-	p.I247fs
STAD	TCGA-HU-A4GT-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954329	62954330	Frame_Shift_Ins	-	A	p.S1156fs
STAD	TCGA-HU-A4GT-01	VPS13B	ENST00000355155.1,ENST00000358544.2,ENST00000441350.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100025987:100026163:100050650:100050794:100108539:100108660,	100050651	100050794	100050671	100050671	Frame_Shift_Del	T	-	p.T56fs
STAD	TCGA-HU-A4GT-01	TNPO3	ENST00000482320.1	chr7	128657036:128657110:128658010:128658211:128694704:128694937,128657036:128657110:128658010:128658211:128681610:128681771,	128658011	128658211	128658127	128658127	Frame_Shift_Del	T	-	p.M69fs
STAD	TCGA-HU-A4GT-01	CD40	ENST00000477696.1,ENST00000466205.1	chr20	44751764:44751858:44755278:44755340:44756776:44756847,44751248:44751395:44755278:44755340:44756776:44756847,	44755279	44755340	44755294	44755294	Frame_Shift_Del	C	-	p.D171fs
STAD	TCGA-HU-A4GT-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100977562:100977658:100990144:100990303:100994164:100994344,	100990145	100990303	100990176	100990176	Frame_Shift_Del	A	-	p.L1163fs
STAD	TCGA-HU-A4GT-01	DIAPH2	ENST00000373054.4	chrX	95939710:95940189:95993584:95993761:96013152:96013257,	95993585	95993761	95993621	95993621	Frame_Shift_Del	A	-	p.V67fs
STAD	TCGA-HU-A4GT-01	NFIC	ENST00000589123.1,ENST00000590282.1,ENST00000346156.5,ENST00000589537.1,ENST00000586919.1,ENST00000341919.3,ENST00000395111.3,ENST00000443272.2	chr19	3435080:3435205:3449011:3449137:3452479:3452664,	3449012	3449137	3449069	3449069	Frame_Shift_Del	C	-	p.S339fs
STAD	TCGA-HU-A4GT-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152319553	152319553	Frame_Shift_Del	A	-	p.R1173fs
STAD	TCGA-HU-A4GT-01	SAMD3	ENST00000368134.2,ENST00000457563.2,ENST00000439090.2,ENST00000437477.2	chr6	130466484:130466567:130467154:130467326:130475969:130475998,	130467155	130467326	130467187	130467188	Frame_Shift_Ins	-	T	p.M388fs
STAD	TCGA-HU-A4GT-01	TPCN1	ENST00000552077.1,ENST00000428632.3,ENST00000552542.1,ENST00000548465.1,ENST00000552642.1,ENST00000335509.6,ENST00000541517.1,ENST00000392569.4,ENST00000552897.1,ENST00000550785.1	chr12	113698172:113698297:113703984:113704161:113705647:113705684,	113703985	113704161	113704017	113704017	Frame_Shift_Del	C	-	p.H162fs
STAD	TCGA-HU-A4GT-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449752	155449753	Frame_Shift_Ins	-	T	p.I970fs
STAD	TCGA-HU-A4GT-01	CSGALNACT1	ENST00000397998.3,ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000519222.1	chr8	19315936:19316153:19362711:19363641:19459281:19459376,	19362712	19363641	19363162	19363163	Frame_Shift_Ins	-	A	p.Q62fs
STAD	TCGA-HU-A4GT-01	EIF3J	ENST00000536248.1,ENST00000261868.5,ENST00000424492.3	chr15	44846821:44846865:44849686:44849848:44852446:44852520,	44849687	44849848	44849810	44849811	Frame_Shift_Ins	-	T	p.S178fs
STAD	TCGA-HU-A4GT-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000574224.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16139692:16139870:16141998:16142160:16146580:16146673,	16141999	16142160	16142119	16142120	Frame_Shift_Ins	-	C	p.A447fs
STAD	TCGA-BR-7722-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000430709.1,ENST00000261023.3	chr2	187534427:187534541:187540330:187540444:187540546:187540654,	187540331	187540444	187540409	187540409	Frame_Shift_Del	G	-	p.Y928X
STAD	TCGA-CD-8530-01	CDC23	ENST00000394886.2	chr5	137534114:137534212:137534293:137534471:137536795:137536928,	137534294	137534471	137534434	137534437	Frame_Shift_Del	TCTT	-	p.230_231del
STAD	TCGA-BR-8678-01	PRR5L	ENST00000527487.1	chr11	36458934:36459026:36467849:36467990:36472758:36472885,36458934:36459026:36467849:36467990:36483891:36483989,	36467850	36467990	36467865	36467865	Frame_Shift_Del	A	-	p.T153fs
STAD	TCGA-HU-A4H3-01	NPC1L1	ENST00000289547.4,ENST00000381160.3,ENST00000423141.1,ENST00000546276.1	chr7	44575854:44576027:44576440:44576541:44578415:44579941,	44576441	44576541	44576448	44576448	Frame_Shift_Del	C	-	p.Y559fs
STAD	TCGA-HU-A4H3-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54537518:54537681:54596826:54596958:54603821:54603882,	54596827	54596958	54596940	54596940	Frame_Shift_Del	T	-	p.G219fs
STAD	TCGA-HU-A4H3-01	PLCB4	ENST00000482123.1,ENST00000473151.1	chr20	9351860:9351942:9352949:9353050:9360700:9360809,	9352950	9353050	9352960	9352960	Frame_Shift_Del	T	-	p.I199fs
STAD	TCGA-HU-A4H3-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948389	169948389	Frame_Shift_Del	A	-	p.E221fs
STAD	TCGA-HU-A4H3-01	TBCD	ENST00000397466.2,ENST00000355528.4,ENST00000539345.2	chr17	80714040:80714091:80721840:80721938:80724142:80724244,	80721841	80721938	80721910	80721911	Frame_Shift_Ins	-	T	p.A102fs
STAD	TCGA-HU-A4H3-01	MFSD12	ENST00000398558.4	chr19	3538647:3538754:3542773:3542975:3544806:3544937,	3542774	3542975	3542859	3542859	Frame_Shift_Del	G	-	p.L513fs
STAD	TCGA-HU-A4H3-01	SLC22A5	ENST00000448810.1,ENST00000437841.2,ENST00000435065.2,ENST00000245407.3,ENST00000461013.1	chr5	131721067:131721191:131722716:131722843:131724612:131724697,	131722717	131722843	131722731	131722731	Frame_Shift_Del	C	-	p.S280fs
STAD	TCGA-HU-A4H3-01	CXorf56	ENST00000320339.4,ENST00000371594.4	chrX	118676467:118676557:118678315:118678454:118694230:118694348,118676467:118676557:118678315:118678454:118679425:118679467,	118678316	118678454	118678354	118678354	Frame_Shift_Del	T	-	p.T129fs
STAD	TCGA-HU-A4H3-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000469040.1,ENST00000334686.6,ENST00000494598.1	chr3	155211929:155212037:155212126:155212306:155215108:155215206,	155212127	155212306	155212244	155212245	Frame_Shift_Ins	-	T	p.S641fs
STAD	TCGA-HU-A4H3-01	PKP4	ENST00000421462.1,ENST00000426248.3	chr2	159477742:159477933:159481466:159481939:159488264:159488444,	159481467	159481939	159481627	159481628	Frame_Shift_Ins	-	C	p.S281fs
STAD	TCGA-HU-A4H3-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1	chr2	159477742:159477933:159481389:159481939:159488264:159488444,	159481390	159481939	159481627	159481628	Frame_Shift_Ins	-	C	p.S281fs
STAD	TCGA-HU-A4H3-01	TTC1	ENST00000231238.5	chr5	159436119:159436200:159437506:159437865:159462146:159462207,	159437507	159437865	159437837	159437837	Frame_Shift_Del	A	-	p.E101fs
STAD	TCGA-HU-A4H3-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41807440:41807609:41808569:41808854:41809876:41809961,	41808570	41808854	41808818	41808818	Frame_Shift_Del	G	-	p.R645fs
STAD	TCGA-HU-A4H3-01	CFI	ENST00000510800.1,ENST00000394634.2,ENST00000394635.3,ENST00000512148.1	chr4	110685692:110685846:110687709:110687980:110723070:110723134,	110687710	110687980	110687927	110687927	Frame_Shift_Del	T	-	p.Y38fs
STAD	TCGA-HU-A4H3-01	UPF3A	ENST00000484246.1,ENST00000375299.3	chr13	115048380:115048418:115051776:115051875:115051993:115052104,	115051777	115051875	115051799	115051800	Frame_Shift_Del	AG	-	p.148_148del
STAD	TCGA-HU-A4H3-01	UPF3A	ENST00000493727.1	chr13	115048353:115048418:115051733:115051875:115051993:115052104,	115051734	115051875	115051799	115051800	Frame_Shift_Del	AG	-	p.148_148del
STAD	TCGA-HU-A4H3-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819645	53819645	Frame_Shift_Del	G	-	p.R265fs
STAD	TCGA-HU-A4H3-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978038	15978038	Frame_Shift_Del	T	-	p.K18fs
STAD	TCGA-HU-A4H3-01	CCDC120	ENST00000603986.1,ENST00000603906.1,ENST00000422185.2	chrX	48923277:48923376:48924711:48925626:48926079:48926305,	48924712	48925626	48925140	48925140	Frame_Shift_Del	G	-	p.W497fs
STAD	TCGA-HU-A4H3-01	DBF4	ENST00000431138.1	chr7	87505914:87506093:87507367:87507448:87514293:87514473,	87507368	87507448	87507389	87507389	Frame_Shift_Del	A	-	p.E23fs
STAD	TCGA-HU-A4H3-01	DBF4	ENST00000486925.1,ENST00000430279.1,ENST00000265728.1	chr7	87505914:87506093:87507367:87507540:87514293:87514473,	87507368	87507540	87507389	87507389	Frame_Shift_Del	A	-	p.E23fs
STAD	TCGA-HU-A4H3-01	PRDM5	ENST00000264808.3,ENST00000502409.1	chr4	121737607:121737729:121737986:121738079:121739507:121739682,	121737987	121738079	121738028	121738028	Frame_Shift_Del	A	-	p.Q235fs
STAD	TCGA-HU-A4H3-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1	chr16	19498266:19498342:19498514:19498648:19501716:19501890,	19498515	19498648	19498596	19498596	Frame_Shift_Del	T	-	p.L840fs
STAD	TCGA-HU-A4H3-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000249883.5,ENST00000513145.1	chr3	134085124:134085269:134086338:134086645:134089541:134090336,	134086339	134086645	134086562	134086562	Frame_Shift_Del	G	-	p.P273fs
STAD	TCGA-HU-A4H3-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141203	167141203	Frame_Shift_Del	A	-	p.G579fs
STAD	TCGA-HU-A4H3-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141203	167141203	Frame_Shift_Del	A	-	p.G579fs
STAD	TCGA-HU-A4H3-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000514331.1,ENST00000351898.6	chr4	72120936:72121116:72205086:72205222:72215628:72215789,	72205087	72205222	72205146	72205146	Frame_Shift_Del	C	-	p.A104fs
STAD	TCGA-HU-A4H3-01	PIH1D1	ENST00000596916.1,ENST00000601807.1,ENST00000596651.1,ENST00000262265.5,ENST00000596049.1,ENST00000593629.1,ENST00000598889.1,ENST00000594845.1	chr19	49949657:49949680:49949807:49949951:49950280:49950302,	49949808	49949951	49949891	49949891	Frame_Shift_Del	G	-	p.Q250fs
STAD	TCGA-HU-A4H3-01	PIH1D1	ENST00000602226.1	chr19	49949657:49949680:49949807:49950001:49950280:49950302,	49949808	49950001	49949891	49949891	Frame_Shift_Del	G	-	p.Q250fs
STAD	TCGA-HU-A4H3-01	PIH1D1	ENST00000597577.1	chr19	49949657:49949680:49949807:49950051:49950280:49950302,	49949808	49950051	49949891	49949891	Frame_Shift_Del	G	-	p.Q250fs
STAD	TCGA-HU-A4H3-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367694	66367695	Frame_Shift_Del	TA	-	p.114_114del
STAD	TCGA-HU-A4H3-01	FBXO25	ENST00000382824.1,ENST00000352684.2	chr8	363072:363213:381340:381444:385614:385700,	381341	381444	381399	381399	Frame_Shift_Del	A	-	p.S64fs
STAD	TCGA-HU-A4H3-01	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828213	121828213	Frame_Shift_Del	A	-	p.W268X
STAD	TCGA-HU-A4H3-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629104	18629105	Frame_Shift_Ins	-	A	p.F121fs
STAD	TCGA-HU-A4H3-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17068662:17068725:17081700:17081843:17085896:17086068,17068662:17068725:17081700:17081843:17085906:17086068,	17081701	17081843	17081703	17081703	Frame_Shift_Del	G	-	p.R785fs
STAD	TCGA-HU-A4H3-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95357932	95357932	Frame_Shift_Del	T	-	p.A572fs
STAD	TCGA-HU-A4H3-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-HU-A4H3-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496635	15496636	Frame_Shift_Ins	-	G	p.L393fs
STAD	TCGA-HU-A4H3-01	HKDC1	ENST00000395086.2	chr10	70980058:70980254:70986962:70987125:70992519:70992668,	70986963	70987125	70987066	70987067	Frame_Shift_Ins	-	CC	p.N56fs
STAD	TCGA-HU-A4H3-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387541	70387541	Frame_Shift_Del	G	-	p.F531fs
STAD	TCGA-HU-A4H3-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63486964	63486967	Frame_Shift_Del	TGAT	-	p.330_331del
STAD	TCGA-HU-A4H3-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63486964	63486967	Frame_Shift_Del	TGAT	-	p.330_331del
STAD	TCGA-HF-7133-01	PYGL	ENST00000532107.1,ENST00000532462.1,ENST00000216392.7,ENST00000544180.2	chr14	51374988:51375055:51375538:51375673:51376612:51376820,	51375539	51375673	51375622	51375622	Frame_Shift_Del	A	-	p.D744fs
STAD	TCGA-CG-4474-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971746	52971747	Frame_Shift_Del	AT	-	p.214_215del
STAD	TCGA-CD-5802-01	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42262865	42262866	Frame_Shift_Del	GA	-	p.40_40del
STAD	TCGA-CG-4304-01	NUP107	ENST00000535718.1,ENST00000229179.4,ENST00000539906.1,ENST00000378905.2	chr12	69090630:69090702:69096515:69096564:69103017:69103045,69094505:69094633:69096515:69096564:69103017:69103045,	69096516	69096564	69096558	69096558	Frame_Shift_Del	A	-	p.A241fs
STAD	TCGA-CG-4304-01	ARHGAP6	ENST00000534860.1,ENST00000303025.6,ENST00000380736.1,ENST00000337414.4	chrX	11160352:11160433:11162099:11162368:11174648:11174746,	11162100	11162368	11162203	11162252	Frame_Shift_Del	CCCCGGGGCCGCGTCCTCTTGCATAGCCAGCAGGGAGCGCTCAGACAGCA	-	p.675_692del
STAD	TCGA-IP-7968-01	TMEM161B	ENST00000511087.1	chr5	87498778:87498892:87501617:87501771:87502255:87502316,	87501618	87501771	87501702	87501703	Frame_Shift_Ins	-	A	p.L243fs
STAD	TCGA-IP-7968-01	TMEM161B	ENST00000514135.1,ENST00000509387.1,ENST00000512429.1,ENST00000296595.6,ENST00000506536.1,ENST00000511218.1,ENST00000507872.1	chr5	87498778:87498892:87501630:87501771:87502255:87502316,	87501631	87501771	87501702	87501703	Frame_Shift_Ins	-	A	p.L243fs
STAD	TCGA-IP-7968-01	TMEM161B	ENST00000510089.1	chr5	87498778:87498892:87501570:87501771:87502255:87502316,	87501571	87501771	87501702	87501703	Frame_Shift_Ins	-	A	p.L243fs
STAD	TCGA-IP-7968-01	FOSL2	ENST00000264716.4	chr2	28615724:28616689:28626973:28627225:28631625:28631669,	28626974	28627225	28627222	28627223	Frame_Shift_Ins	-	C	p.E117fs
STAD	TCGA-CD-8526-01	CARM1	ENST00000586221.1,ENST00000344150.4,ENST00000590699.1,ENST00000589693.1,ENST00000590039.1	chr19	10982585:10982598:11015626:11015752:11018714:11018821,	11015627	11015752	11015670	11015671	Frame_Shift_Del	AG	-	p.88_88del
STAD	TCGA-F1-6177-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448297	56448298	Frame_Shift_Ins	-	G	p.R117fs
STAD	TCGA-F1-6177-01	USP10	ENST00000567526.1	chr16	84801872:84801964:84806146:84806291:84808765:84808831,84801872:84801964:84806146:84806291:84812500:84812593,	84806147	84806291	84806174	84806175	Frame_Shift_Ins	-	A	p.E680fs
STAD	TCGA-F1-6177-01	LARP4	ENST00000347328.5	chr12	50835372:50835426:50848096:50848200:50854917:50855130,	50848097	50848200	50848190	50848191	Frame_Shift_Ins	-	A	p.Q371fs
STAD	TCGA-F1-6177-01	PLBD2	ENST00000280800.3,ENST00000545182.2	chr12	113824741:113824894:113825548:113825711:113826263:113827043,	113825549	113825711	113825651	113825652	Frame_Shift_Ins	-	A	p.A514fs
STAD	TCGA-F1-6177-01	CDHR1	ENST00000332904.3	chr10	85971934:85972163:85972846:85973104:85978834:85979377,	85972847	85973104	85973046	85973046	Frame_Shift_Del	G	-	p.R661fs
STAD	TCGA-F1-6177-01	PRG4	ENST00000367483.4,ENST00000367486.3,ENST00000367485.4,ENST00000445192.2,ENST00000367484.3	chr1	186278924:186279002:186280165:186280302:186280571:186280728,	186280166	186280302	186280259	186280259	Frame_Shift_Del	T	-	p.V1198fs
STAD	TCGA-F1-6177-01	LHX6	ENST00000482062.1,ENST00000559895.1,ENST00000373755.2,ENST00000394319.4	chr9	124966902:124967059:124971892:124971996:124975884:124976059,	124971893	124971996	124971944	124971944	Frame_Shift_Del	G	-	p.V370fs
STAD	TCGA-F1-6177-01	SPINK7	ENST00000504037.1,ENST00000274565.4	chr5	147691988:147692107:147692936:147692962:147693662:147693774,	147692937	147692962	147692956	147692956	Frame_Shift_Del	A	-	p.P27fs
STAD	TCGA-F1-6177-01	LRSAM1	ENST00000373324.4,ENST00000323301.4,ENST00000300417.6,ENST00000373322.1	chr9	130230018:130230109:130236079:130236210:130241212:130241242,	130236080	130236210	130236099	130236099	Frame_Shift_Del	C	-	p.Y213fs
STAD	TCGA-F1-6177-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96859602:96860861:96863847:96864033:96866556:96866667,	96863848	96864033	96864016	96864017	Frame_Shift_Ins	-	T	p.L728fs
STAD	TCGA-F1-6177-01	NUP93	ENST00000564887.1,ENST00000563486.1,ENST00000542526.1,ENST00000308159.5,ENST00000569842.1	chr16	56871536:56871638:56872863:56872981:56873432:56873516,	56872864	56872981	56872937	56872937	Frame_Shift_Del	T	-	p.T697fs
STAD	TCGA-F1-6177-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104704	26104704	Frame_Shift_Del	G	-	p.S455fs
STAD	TCGA-F1-6177-01	SFTPC	ENST00000521315.1,ENST00000523296.1	chr8	22020592:22020715:22020948:22021059:22021395:22021425,22020592:22020715:22020948:22021059:22021413:22021425,	22020949	22021059	22021059	22021060	Frame_Shift_Ins	-	GT	p.Q145fs
STAD	TCGA-F1-6177-01	PLEKHG4	ENST00000563969.1,ENST00000450733.1,ENST00000379344.3,ENST00000427155.2,ENST00000360461.5	chr16	67316644:67316761:67318177:67318360:67318615:67319118,	67318178	67318360	67318242	67318242	Frame_Shift_Del	A	-	p.D525fs
STAD	TCGA-F1-6177-01	OCEL1	ENST00000594283.1,ENST00000597836.1,ENST00000596279.1,ENST00000598172.1,ENST00000598068.1,ENST00000600232.1,ENST00000215061.4	chr19	17337966:17338008:17338648:17338814:17339064:17339118,	17338649	17338814	17338803	17338803	Frame_Shift_Del	C	-	p.P202fs
STAD	TCGA-F1-6177-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796827	7796827	Frame_Shift_Del	C	-	p.P303fs
STAD	TCGA-F1-6177-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46797804:46797933:46798988:46799102:46799688:46799863,	46798989	46799102	46799029	46799029	Frame_Shift_Del	T	-	p.N941fs
STAD	TCGA-F1-6177-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396234	396234	Frame_Shift_Del	G	-	p.G265fs
STAD	TCGA-F1-6177-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121040	95121040	Frame_Shift_Del	A	-	p.V186fs
STAD	TCGA-F1-6177-01	RAB7A	ENST00000490093.1,ENST00000482525.1,ENST00000464496.1,ENST00000265062.3	chr3	128514202:128514263:128516785:128516912:128525214:128525292,	128516786	128516912	128516847	128516848	Frame_Shift_Ins	-	CC	p.A39fs
STAD	TCGA-F1-6177-01	SPAG17	ENST00000336338.5	chr1	118565926:118566086:118567860:118568039:118570896:118571017,	118567861	118568039	118567980	118567980	Frame_Shift_Del	G	-	p.Q1264fs
STAD	TCGA-F1-6177-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-F1-6177-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-F1-6177-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-F1-6177-01	PON2	ENST00000491069.1	chr7	95041635:95041789:95045483:95045609:95053826:95053897,	95045484	95045609	95045560	95045560	Frame_Shift_Del	A	-	p.S66fs
STAD	TCGA-F1-6177-01	PON2	ENST00000222572.3,ENST00000433091.2,ENST00000536183.1,ENST00000455123.1,ENST00000493290.1	chr7	95041635:95041789:95045553:95045609:95053826:95053897,	95045554	95045609	95045560	95045560	Frame_Shift_Del	A	-	p.S66fs
STAD	TCGA-F1-6177-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124457070	124457071	Frame_Shift_Ins	-	A	p.V322fs
STAD	TCGA-F1-6177-01	UMPS	ENST00000474588.1	chr3	124453939:124454093:124456761:124457086:124458870:124459046,	124456762	124457086	124457070	124457071	Frame_Shift_Ins	-	A	p.V322fs
STAD	TCGA-F1-6177-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124457070	124457071	Frame_Shift_Ins	-	A	p.V322fs
STAD	TCGA-F1-6177-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525560	75525560	Frame_Shift_Del	C	-	p.V456fs
STAD	TCGA-F1-6177-01	SRGAP3	ENST00000383836.3	chr3	9069783:9069814:9074333:9074436:9079746:9079774,9068618:9068679:9074333:9074436:9079746:9079774,	9074334	9074436	9074429	9074430	Frame_Shift_Ins	-	G	p.C482fs
STAD	TCGA-F1-6177-01	CA2	ENST00000520127.1	chr8	86377500:86377698:86386552:86386645:86388026:86388089,	86386553	86386645	86386635	86386635	Frame_Shift_Del	T	-	p.I145fs
STAD	TCGA-F1-6177-01	CPVL	ENST00000455893.2	chr7	29035252:29035498:29070192:29070375:29103676:29103850,29035252:29035498:29070192:29070375:29111388:29111461,	29070193	29070375	29070262	29070262	Frame_Shift_Del	T	-	p.V418fs
STAD	TCGA-F1-6177-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.E611fs
STAD	TCGA-F1-6177-01	SLFN13	ENST00000285013.6	chr17	33770807:33770939:33771633:33772712:33774286:33774413,	33771634	33772712	33771844	33771844	Frame_Shift_Del	A	-	p.C286fs
STAD	TCGA-F1-6177-01	WDR45B	ENST00000392325.4,ENST00000572583.1,ENST00000571835.1	chr17	80583264:80583359:80585079:80585167:80601824:80601899,80583264:80583359:80585079:80585167:80588796:80588898,	80585080	80585167	80585121	80585121	Frame_Shift_Del	T	-	p.F98fs
STAD	TCGA-F1-6177-01	TYRP1	ENST00000381136.2,ENST00000388918.5,ENST00000381137.2	chr9	12704666:12704705:12707996:12708143:12708976:12709235,	12707997	12708143	12708067	12708068	Frame_Shift_Ins	-	C	p.W444fs
STAD	TCGA-F1-6177-01	KIF21A	ENST00000551264.1	chr12	39705218:39705355:39713707:39713815:39716469:39716684,	39713708	39713815	39713784	39713784	Frame_Shift_Del	T	-	p.I1235fs
STAD	TCGA-F1-6177-01	LGALS3	ENST00000553755.1	chr14	55595977:55596018:55604762:55605086:55606992:55607081,	55604763	55605086	55605002	55605003	Frame_Shift_Ins	-	G	p.P86fs
STAD	TCGA-F1-6177-01	ITSN2	ENST00000361999.3	chr2	24498581:24498718:24509080:24509220:24516556:24516644,	24509081	24509220	24509095	24509096	Frame_Shift_Ins	-	A	p.N617_N618delinsX
STAD	TCGA-F1-6177-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155904	108155907	Frame_Shift_Del	ATAT	-	p.10_11del
STAD	TCGA-F1-6177-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.A201fs
STAD	TCGA-F1-6177-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878042	Frame_Shift_Del	TT	-	p.81_81del
STAD	TCGA-F1-6177-01	TMEM41B	ENST00000524543.1,ENST00000299596.4,ENST00000533867.1,ENST00000528080.1	chr11	9305093:9305140:9308001:9308140:9309248:9309353,	9308002	9308140	9308018	9308018	Frame_Shift_Del	A	-	p.I231fs
STAD	TCGA-F1-6177-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602375.1,ENST00000582377.1,ENST00000602811.1,ENST00000582183.1,ENST00000579089.1,ENST00000602305.1,ENST00000581941.1,ENST00000602537.1	chr17	11998918:11999011:12011106:12011226:12013691:12013743,	12011107	12011226	12011155	12011155	Frame_Shift_Del	T	-	p.K187fs
STAD	TCGA-F1-6177-01	NOP58	ENST00000264279.5	chr2	203162567:203162629:203164956:203165090:203167643:203167780,	203164957	203165090	203165008	203165009	Frame_Shift_Ins	-	A	p.S440fs
STAD	TCGA-F1-6177-01	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381022.2	chr9	13123151:13123297:13125214:13125389:13126514:13126589,	13125215	13125389	13125277	13125277	Frame_Shift_Del	T	-	p.K1582fs
STAD	TCGA-F1-6177-01	METTL6	ENST00000383790.3,ENST00000443029.1,ENST00000450816.2	chr3	15452842:15452944:15455527:15455669:15457004:15457090,15452842:15452944:15455527:15455669:15456236:15456421,15452842:15452944:15455527:15455669:15457278:15457367,	15455528	15455669	15455535	15455535	Frame_Shift_Del	A	-	p.T223fs
STAD	TCGA-F1-6177-01	KIF20B	ENST00000416354.1,ENST00000260753.4,ENST00000394289.2,ENST00000371728.3	chr10	91477332:91477479:91478466:91478629:91479175:91479463,	91478467	91478629	91478521	91478521	Frame_Shift_Del	T	-	p.S442fs
STAD	TCGA-F1-6177-01	DBP	ENST00000222122.5	chr19	49133987:49134309:49136700:49136912:49138836:49139247,	49136701	49136912	49136701	49136703	Frame_Shift_Del	CTT	-	p.254_254del
STAD	TCGA-F1-6177-01	THTPA	ENST00000554970.1	chr14	24025479:24025552:24025951:24026243:24027903:24028068,	24025952	24026243	24026212	24026213	Frame_Shift_Del	CA	-	p.82_82del
STAD	TCGA-F1-6177-01	THTPA	ENST00000556015.1	chr14	24025479:24025552:24025951:24026248:24027903:24028068,	24025952	24026248	24026212	24026213	Frame_Shift_Del	CA	-	p.82_82del
STAD	TCGA-F1-6177-01	HNRNPA2B1	ENST00000360787.4,ENST00000354667.4,ENST00000463181.1,ENST00000356674.7,ENST00000490912.1	chr7	26232114:26232197:26232870:26232993:26233194:26233314,	26232871	26232993	26232884	26232885	Frame_Shift_Ins	-	C	p.G329fs
STAD	TCGA-F1-6177-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124165609:124165732:124174023:124174206:124175456:124175575,	124174024	124174206	124174076	124174076	Frame_Shift_Del	A	-	p.E1200fs
STAD	TCGA-F1-6177-01	F10	ENST00000375559.3	chr13	113798164:113798409:113801692:113801810:113803229:113803776,	113801693	113801810	113801712	113801712	Frame_Shift_Del	A	-	p.E256fs
STAD	TCGA-F1-6177-01	F10	ENST00000409306.1	chr13	113798164:113798409:113801692:113801806:113803229:113803776,	113801693	113801806	113801712	113801712	Frame_Shift_Del	A	-	p.E256fs
STAD	TCGA-F1-6177-01	F10	ENST00000375551.3	chr13	113798164:113798409:113801692:113801800:113803229:113803776,	113801693	113801800	113801712	113801712	Frame_Shift_Del	A	-	p.E256fs
STAD	TCGA-F1-6177-01	EIF5A2	ENST00000295822.2,ENST00000474417.1	chr3	170612080:170612212:170624777:170624882:170625430:170625588,	170624778	170624882	170624844	170624844	Frame_Shift_Del	T	-	p.Y69fs
STAD	TCGA-F1-6177-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097622	27097622	Frame_Shift_Del	A	-	p.N1070fs
STAD	TCGA-F1-6177-01	ERG	ENST00000453032.2,ENST00000288319.7,ENST00000417133.2,ENST00000398919.2	chr21	39767355:39767502:39772495:39772567:39774478:39774559,39764297:39764366:39772495:39772567:39774478:39774559,	39772496	39772567	39772564	39772564	Frame_Shift_Del	C	-	p.G233fs
STAD	TCGA-F1-6177-01	IFIH1	ENST00000263642.2	chr2	163133924:163134203:163134714:163134838:163136505:163136622,	163134715	163134838	163134715	163134716	Frame_Shift_Ins	-	T	p.A589fs
STAD	TCGA-F1-6177-01	MCAM	ENST00000264036.4,ENST00000525586.1,ENST00000528533.1,ENST00000392814.1	chr11	119182052:119182131:119182239:119182361:119182517:119182659,	119182240	119182361	119182354	119182355	Frame_Shift_Ins	-	G	p.P431fs
STAD	TCGA-F1-6177-01	KIF23	ENST00000260363.4,ENST00000352331.4,ENST00000395392.2,ENST00000560042.1,ENST00000558346.1,ENST00000561089.1	chr15	69706719:69706815:69708332:69708402:69709721:69709850,	69708333	69708402	69708364	69708364	Frame_Shift_Del	A	-	p.V14fs
STAD	TCGA-F1-6177-01	ITGAL	ENST00000563615.1,ENST00000358164.5,ENST00000356798.6	chr16	30516709:30516783:30518035:30518177:30521681:30521716,	30518036	30518177	30518138	30518138	Frame_Shift_Del	C	-	p.F823fs
STAD	TCGA-F1-6177-01	UGT2B4	ENST00000502655.1,ENST00000381096.3	chr4	70359410:70359559:70360858:70361128:70391404:70391732,	70360859	70361128	70360942	70360942	Frame_Shift_Del	T	-	p.N213fs
STAD	TCGA-F1-6177-01	ENPP2	ENST00000520066.1	chr8	120633633:120633759:120638858:120638960:120650664:120650767,	120638859	120638960	120638944	120638944	Frame_Shift_Del	G	-	p.W52fs
STAD	TCGA-F1-6177-01	ENPP2	ENST00000427067.2,ENST00000259486.6,ENST00000518958.1,ENST00000522826.1,ENST00000075322.6	chr8	120633633:120633759:120638804:120638960:120650664:120650767,	120638805	120638960	120638944	120638944	Frame_Shift_Del	G	-	p.W52fs
STAD	TCGA-F1-6177-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103754	47103755	Frame_Shift_Ins	-	TC	p.D2064fs
STAD	TCGA-F1-6177-01	DIP2A	ENST00000400274.1,ENST00000435722.3,ENST00000457905.3,ENST00000427143.2,ENST00000417564.2	chr21	47918494:47918746:47924273:47924402:47929169:47929289,	47924274	47924402	47924285	47924286	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-F1-6177-01	DIP2A	ENST00000318711.7	chr21	47918494:47918746:47924270:47924402:47929169:47929289,	47924271	47924402	47924285	47924286	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-F1-6177-01	PLEKHG4	ENST00000563969.1,ENST00000450733.1,ENST00000379344.3,ENST00000427155.2,ENST00000360461.5	chr16	67316644:67316761:67318177:67318360:67318615:67319118,	67318178	67318360	67318246	67318246	Frame_Shift_Del	C	-	p.P526fs
STAD	TCGA-F1-6177-01	TRIM27	ENST00000377199.3,ENST00000377194.3	chr6	28875012:28875039:28876584:28876617:28876749:28876766,	28876585	28876617	28876589	28876590	Frame_Shift_Ins	-	ATTTT	p.I305fs
STAD	TCGA-CG-4475-01	NUDT17	ENST00000460879.1	chr1	145587719:145587818:145588377:145588635:145588871:145589055,145587719:145587818:145588377:145588635:145589235:145589409,	145588378	145588635	145588424	145588424	Frame_Shift_Del	T	-	p.H150fs
STAD	TCGA-CG-4475-01	NUDT17	ENST00000334513.5	chr1	145587719:145587818:145588377:145588470:145588609:145588635,	145588378	145588470	145588424	145588424	Frame_Shift_Del	T	-	p.H150fs
STAD	TCGA-CG-5717-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46295003:46295232:46300941:46301137:46305237:46305367,	46300942	46301137	46300954	46300955	Frame_Shift_Ins	-	T	p.L522fs
STAD	TCGA-HJ-7597-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005576	150005579	Frame_Shift_Del	CAGA	-	p.216_217del
STAD	TCGA-HJ-7597-01	SREBF2	ENST00000361204.4,ENST00000424354.1	chr22	42280845:42281015:42289120:42289289:42290823:42290941,	42289121	42289289	42289201	42289201	Frame_Shift_Del	C	-	p.H763fs
STAD	TCGA-HJ-7597-01	PRAM1	ENST00000423345.4,ENST00000255612.3	chr19	8563109:8563173:8563259:8564664:8567448:8567495,	8563260	8564664	8564379	8564380	Frame_Shift_Ins	-	G	p.K105fs
STAD	TCGA-HJ-7597-01	NHLRC3	ENST00000470258.1,ENST00000379600.3	chr13	39613700:39613848:39616241:39616442:39618226:39618318,	39616242	39616442	39616313	39616313	Frame_Shift_Del	A	-	p.G152fs
STAD	TCGA-HJ-7597-01	KIAA1217	ENST00000438429.1	chr10	24544256:24544525:24669797:24669996:24721923:24722122,24508554:24508838:24669797:24669996:24721923:24722122,24528123:24528266:24669797:24669996:24721923:24722122,	24669798	24669996	24669980	24669983	Frame_Shift_Del	GAAA	-	p.179_180del
STAD	TCGA-HJ-7597-01	VPS13B	ENST00000355155.1,ENST00000358544.2,ENST00000441350.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100025987:100026163:100050650:100050794:100108539:100108660,	100050651	100050794	100050671	100050671	Frame_Shift_Del	T	-	p.T56fs
STAD	TCGA-HJ-7597-01	PRMT3	ENST00000529592.1,ENST00000330796.5,ENST00000437750.2,ENST00000331079.6	chr11	20515464:20515515:20515712:20515800:20529849:20530254,	20515713	20515800	20515777	20515777	Frame_Shift_Del	A	-	p.E488fs
STAD	TCGA-HJ-7597-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919936	57919936	Frame_Shift_Del	C	-	p.V395fs
STAD	TCGA-HJ-7597-01	TPP2	ENST00000376065.4,ENST00000376052.3	chr13	103257142:103257271:103266450:103266546:103268745:103268850,	103266451	103266546	103266508	103266509	Frame_Shift_Del	TA	-	p.117_118del
STAD	TCGA-HJ-7597-01	PIK3R3	ENST00000262741.5,ENST00000354242.4,ENST00000488808.1,ENST00000540385.1,ENST00000372006.1,ENST00000340332.6,ENST00000420542.1,ENST00000423209.1	chr1	46509333:46509543:46511589:46511760:46512222:46512297,	46511590	46511760	46511600	46511600	Frame_Shift_Del	A	-	p.C393fs
STAD	TCGA-HJ-7597-01	CAPZB	ENST00000264203.3	chr1	19665852:19666111:19671680:19671746:19683128:19683245,	19671681	19671746	19671731	19671731	Frame_Shift_Del	T	-	p.T202fs
STAD	TCGA-HJ-7597-01	KLHDC8B	ENST00000332780.2	chr3	49212365:49212399:49212494:49212596:49213037:49213835,	49212495	49212596	49212566	49212566	Frame_Shift_Del	G	-	p.L279fs
STAD	TCGA-HJ-7597-01	BFAR	ENST00000566710.1,ENST00000261658.2,ENST00000426842.2	chr16	14738144:14738466:14748922:14749067:14755748:14755922,14743660:14743830:14748922:14749067:14755748:14755922,	14748923	14749067	14749040	14749041	Frame_Shift_Ins	-	C	p.K252fs
STAD	TCGA-HJ-7597-01	RGS14	ENST00000503110.1,ENST00000408923.3,ENST00000511890.1,ENST00000514713.1,ENST00000512490.1	chr5	176794414:176794558:176794714:176794826:176795157:176795267,	176794715	176794826	176794793	176794793	Frame_Shift_Del	G	-	p.P235fs
STAD	TCGA-HJ-7597-01	CCM2L	ENST00000262659.8	chr20	30598252:30598287:30602706:30602874:30605602:30605686,	30602707	30602874	30602812	30602812	Frame_Shift_Del	C	-	p.Y45fs
STAD	TCGA-HJ-7597-01	TRAK1	ENST00000484786.1,ENST00000396175.1,ENST00000487159.1,ENST00000449246.1,ENST00000327628.5,ENST00000341421.3,ENST00000427771.1	chr3	42240668:42240745:42242309:42242546:42243927:42244244,	42242310	42242546	42242450	42242450	Frame_Shift_Del	C	-	p.T444fs
STAD	TCGA-HJ-7597-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50155694	50155694	Frame_Shift_Del	G	-	p.R683fs
STAD	TCGA-HJ-7597-01	PRAM1	ENST00000423345.4,ENST00000255612.3	chr19	8563109:8563173:8563259:8564664:8567448:8567495,	8563260	8564664	8564415	8564416	Frame_Shift_Ins	-	G	p.K93fs
STAD	TCGA-HJ-7597-01	DHX58	ENST00000586522.1	chr17	40263313:40263515:40263763:40263911:40264130:40264217,	40263764	40263911	40263776	40263777	Frame_Shift_Del	CA	-	p.45_46del
STAD	TCGA-HJ-7597-01	DHX58	ENST00000413196.2,ENST00000251642.3,ENST00000430773.1	chr17	40263313:40263515:40263742:40263911:40264130:40264217,	40263743	40263911	40263776	40263777	Frame_Shift_Del	CA	-	p.45_46del
STAD	TCGA-HJ-7597-01	CNOT6	ENST00000393356.1,ENST00000504343.1,ENST00000261951.4	chr5	179991674:179991743:179992819:179992977:179994087:179994242,	179992820	179992977	179992921	179992921	Frame_Shift_Del	A	-	p.R220fs
STAD	TCGA-HJ-7597-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37627766:37628016:37646809:37646986:37649003:37649143,	37646810	37646986	37646922	37646922	Frame_Shift_Del	C	-	p.S681fs
STAD	TCGA-HJ-7597-01	PRPSAP2	ENST00000395656.2,ENST00000268835.2,ENST00000574451.1,ENST00000419071.2,ENST00000536323.1,ENST00000492129.1	chr17	18827226:18827297:18832123:18832270:18833852:18834047,	18832124	18832270	18832236	18832236	Frame_Shift_Del	C	-	p.A306fs
STAD	TCGA-HJ-7597-01	KDM2B	ENST00000542973.1,ENST00000377071.4	chr12	121880794:121880833:121881482:121881596:121881814:121882018,	121881483	121881596	121881493	121881496	Frame_Shift_Del	AAGT	-	p.851_852del
STAD	TCGA-HJ-7597-01	BMP1	ENST00000354870.5,ENST00000306385.5,ENST00000520982.1,ENST00000520970.1,ENST00000520626.1	chr8	22064815:22065029:22066957:22067208:22069106:22069405,	22066958	22067208	22067038	22067038	Frame_Shift_Del	G	-	p.P885fs
STAD	TCGA-HJ-7597-01	G2E3	ENST00000544007.1	chr14	31070975:31071100:31071204:31071337:31077093:31077125,	31071205	31071337	31071299	31071302	Frame_Shift_Del	CAGA	-	p.324_325del
STAD	TCGA-HJ-7597-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.Q164fs
STAD	TCGA-CG-5721-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38103659:38103859:38104071:38104292:38105331:38105410,	38104072	38104292	38104179	38104179	Frame_Shift_Del	A	-	p.L327fs
STAD	TCGA-CG-5721-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631856	116631857	Frame_Shift_Ins	-	G	p.S157fs
STAD	TCGA-CG-5721-01	ASPSCR1	ENST00000306729.7	chr17	79970106:79970159:79972950:79973232:79974351:79974403,	79972951	79973232	79973078	79973078	Frame_Shift_Del	T	-	p.L494fs
STAD	TCGA-CG-5721-01	UBR1	ENST00000546274.2,ENST00000382177.2,ENST00000290650.4	chr15	43348541:43348640:43350538:43350627:43351282:43351390,	43350539	43350627	43350584	43350584	Frame_Shift_Del	A	-	p.M380fs
STAD	TCGA-CG-5721-01	PFAS	ENST00000314666.6,ENST00000545834.1,ENST00000580356.1	chr17	8167529:8167655:8167787:8167919:8168212:8168443,	8167788	8167919	8167809	8167809	Frame_Shift_Del	C	-	p.K646fs
STAD	TCGA-CG-5721-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647321	Frame_Shift_Del	AA	-	p.813_814del
STAD	TCGA-CG-5721-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-CG-5721-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-CG-5721-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50122588:50122637:50123777:50123890:50124145:50124218,	50123778	50123890	50123859	50123859	Frame_Shift_Del	A	-	p.A686fs
STAD	TCGA-CG-5721-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698571	30698571	Frame_Shift_Del	A	-	p.R142fs
STAD	TCGA-CG-5721-01	ZDHHC2	ENST00000262096.8	chr8	17067440:17067567:17067896:17067989:17072745:17072858,	17067897	17067989	17067923	17067924	Frame_Shift_Ins	-	T	p.T295fs
STAD	TCGA-CG-5721-01	SUSD4	ENST00000344029.6	chr1	223408393:223408442:223437971:223438160:223441843:223442017,	223437972	223438160	223437982	223437982	Frame_Shift_Del	A	-	p.A239fs
STAD	TCGA-CG-5721-01	MAP3K5	ENST00000359015.4	chr6	136935296:136935424:136943985:136944119:136958462:136958544,	136943986	136944119	136943991	136943992	Frame_Shift_Ins	-	TC	p.D715fs
STAD	TCGA-CG-5721-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000559257.1,ENST00000558285.1,ENST00000268049.7,ENST00000557884.1,ENST00000558157.1,ENST00000559192.1,ENST00000559771.1	chr15	63829336:63829355:63845913:63845997:63848865:63848900,	63845914	63845997	63845976	63845977	Frame_Shift_Del	AA	-	p.116_116del
STAD	TCGA-CG-5721-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108560	14108560	Frame_Shift_Del	A	-	p.K1423fs
STAD	TCGA-CG-5721-01	ABHD2	ENST00000562073.1,ENST00000569411.1,ENST00000565973.1,ENST00000352732.5,ENST00000355100.3	chr15	89659734:89659752:89694907:89695083:89698597:89698621,	89694908	89695083	89694928	89694928	Frame_Shift_Del	G	-	p.W72fs
STAD	TCGA-CG-5721-01	FAM98A	ENST00000441530.2,ENST00000475122.1,ENST00000238823.8	chr2	33809955:33810511:33810596:33810764:33811628:33811745,	33810597	33810764	33810704	33810704	Frame_Shift_Del	T	-	p.T261fs
STAD	TCGA-CG-5721-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041393	20041394	Frame_Shift_Ins	-	A	p.D162_I163delinsX
STAD	TCGA-CG-5721-01	ITGAL	ENST00000433423.2,ENST00000358164.5,ENST00000356798.6	chr16	30525091:30525167:30528293:30528407:30528969:30529026,	30528294	30528407	30528332	30528333	Frame_Shift_Ins	-	A	p.P967fs
STAD	TCGA-CG-5721-01	CAMSAP3	ENST00000446248.2,ENST00000160298.4	chr19	7675585:7675679:7675762:7675817:7675980:7676054,	7675763	7675817	7675769	7675769	Frame_Shift_Del	C	-	p.S361fs
STAD	TCGA-CG-5721-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202354	56202355	Frame_Shift_Del	TC	-	p.1689_1689del
STAD	TCGA-CG-5721-01	HKDC1	ENST00000395086.2,ENST00000354624.5	chr10	71000407:71000507:71002937:71003121:71005834:71005990,	71002938	71003121	71003028	71003028	Frame_Shift_Del	G	-	p.W261fs
STAD	TCGA-CG-5721-01	YLPM1	ENST00000238571.3,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7	chr14	75269258:75269379:75276082:75276500:75276612:75276705,	75276083	75276500	75276388	75276389	Frame_Shift_Ins	-	C	p.P1609fs
STAD	TCGA-CG-5721-01	IFT172	ENST00000507184.1,ENST00000260570.3	chr2	27682244:27682389:27682575:27682696:27683881:27683960,	27682576	27682696	27682634	27682634	Frame_Shift_Del	C	-	p.D862fs
STAD	TCGA-CG-5721-01	GALNT3	ENST00000409882.1,ENST00000392701.3	chr2	166611441:166611573:166613556:166613757:166615256:166615374,	166613557	166613757	166613688	166613688	Frame_Shift_Del	T	-	p.S421fs
STAD	TCGA-CG-5721-01	SND1	ENST00000354725.3	chr7	127721411:127721553:127724775:127724899:127725762:127725832,	127724776	127724899	127724828	127724828	Frame_Shift_Del	C	-	p.H721fs
STAD	TCGA-CG-5721-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	TT	p.T304fs
STAD	TCGA-CG-5721-01	TAS1R1	ENST00000415267.1,ENST00000351136.3	chr1	6631000:6631275:6636474:6636687:6637009:6637130,	6636475	6636687	6636476	6636476	Frame_Shift_Del	T	-	p.L421fs
STAD	TCGA-CG-5721-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173278	126173278	Frame_Shift_Del	G	-	p.H720fs
STAD	TCGA-CG-5721-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514338	75514338	Frame_Shift_Del	T	-	p.N674fs
STAD	TCGA-CG-5721-01	NADK	ENST00000378625.1,ENST00000342348.5,ENST00000344463.4,ENST00000341426.5,ENST00000341991.3	chr1	1685005:1685088:1685489:1685647:1685722:1685822,	1685490	1685647	1685539	1685540	Frame_Shift_Ins	-	G	p.H496fs
STAD	TCGA-CG-5721-01	ZRANB1	ENST00000359653.4	chr10	126655162:126655350:126660533:126660687:126662213:126662285,	126660534	126660687	126660638	126660638	Frame_Shift_Del	T	-	p.D369fs
STAD	TCGA-CG-5721-01	SLC38A6	ENST00000451406.1,ENST00000525723.2,ENST00000491344.3,ENST00000267488.4,ENST00000527591.1,ENST00000456840.2,ENST00000354886.2,ENST00000529345.2,ENST00000533744.2	chr14	61504342:61504401:61509864:61509930:61510167:61510221,	61509865	61509930	61509874	61509874	Frame_Shift_Del	A	-	p.I211fs
STAD	TCGA-CG-5721-01	C19orf44	ENST00000596592.1	chr19	16607249:16607276:16611602:16612362:16613875:16614191,16607249:16607276:16611602:16612362:16617511:16617585,	16611603	16612362	16612295	16612295	Frame_Shift_Del	A	-	p.E231fs
STAD	TCGA-CG-5721-01	CHFR	ENST00000443047.2	chr12	133438132:133438220:133448870:133448980:133454140:133454240,	133448871	133448980	133448912	133448913	Frame_Shift_Ins	-	C	p.D101fs
STAD	TCGA-CG-5721-01	CDYL	ENST00000472453.1,ENST00000328908.5,ENST00000449732.2,ENST00000343762.5,ENST00000397588.3	chr6	4937798:4937971:4943779:4943990:4952499:4952607,	4943780	4943990	4943960	4943961	Frame_Shift_Del	TA	-	p.434_434del
STAD	TCGA-CG-5721-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965055	123965055	Frame_Shift_Del	C	-	p.N435fs
STAD	TCGA-CG-5721-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837308	17837308	Frame_Shift_Del	C	-	p.G319fs
STAD	TCGA-CG-5721-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078661	117078662	Frame_Shift_Ins	-	T	p.I185fs
STAD	TCGA-CG-5721-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91709345	91709345	Frame_Shift_Del	A	-	p.E2633fs
STAD	TCGA-CG-5721-01	HGD	ENST00000492108.1	chr3	120347212:120347376:120351993:120352175:120357301:120357428,120347212:120347376:120351993:120352175:120360435:120360540,	120351994	120352175	120352070	120352071	Frame_Shift_Ins	-	G	p.H371fs
STAD	TCGA-CG-5721-01	BTBD16	ENST00000368994.2,ENST00000260723.4	chr10	124058518:124058649:124066703:124066823:124088994:124089086,	124066704	124066823	124066813	124066813	Frame_Shift_Del	T	-	p.T300fs
STAD	TCGA-CG-5721-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.1893_1893del
STAD	TCGA-CG-5721-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108749	14108750	Frame_Shift_Del	AA	-	p.1486_1487del
STAD	TCGA-CG-5721-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5803676:5803821:5806456:5806568:5809927:5810054,	5806457	5806568	5806486	5806486	Frame_Shift_Del	A	-	p.R826fs
STAD	TCGA-CG-5721-01	PDLIM4	ENST00000253754.3,ENST00000379018.3,ENST00000418373.1	chr5	131602156:131602238:131606607:131606786:131606995:131607029,	131606608	131606786	131606779	131606779	Frame_Shift_Del	C	-	p.P166fs
STAD	TCGA-CG-5721-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3,ENST00000411772.1	chr15	43730521:43730614:43733723:43733781:43738584:43738788,	43733724	43733781	43733757	43733757	Frame_Shift_Del	T	-	p.N1022fs
STAD	TCGA-CG-5721-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153442	19153442	Frame_Shift_Del	T	-	p.M455fs
STAD	TCGA-CG-5721-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-CG-5721-01	UMPS	ENST00000462091.1,ENST00000460034.1,ENST00000536109.1,ENST00000487622.1,ENST00000232607.2,ENST00000474588.1,ENST00000467167.1,ENST00000538242.1	chr3	124456977:124457086:124458870:124459046:124460998:124461113,	124458871	124459046	124458976	124458976	Frame_Shift_Del	G	-	p.R363fs
STAD	TCGA-CG-5721-01	ASAP1	ENST00000519483.1,ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131070199:131070322:131072824:131073315:131088593:131088652,	131072825	131073315	131073124	131073125	Frame_Shift_Ins	-	G	p.K965fs
STAD	TCGA-CG-5721-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913250	129913250	Frame_Shift_Del	C	-	p.C475fs
STAD	TCGA-CG-5721-01	OSBPL5	ENST00000525498.1	chr11	3140776:3140861:3141773:3141854:3143226:3143328,	3141774	3141854	3141800	3141800	Frame_Shift_Del	C	-	p.V153fs
STAD	TCGA-CG-5721-01	OSBPL5	ENST00000459995.1,ENST00000534491.1,ENST00000263650.7	chr11	3140776:3140861:3141650:3141854:3143226:3143328,	3141651	3141854	3141800	3141800	Frame_Shift_Del	C	-	p.V153fs
STAD	TCGA-CG-5721-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672364	151672365	Frame_Shift_Ins	-	C	p.E946fs
STAD	TCGA-CG-5721-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986251	2986251	Frame_Shift_Del	A	-	p.G21fs
STAD	TCGA-CG-5721-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729846	24729847	Frame_Shift_Ins	-	C	p.G189fs
STAD	TCGA-CG-5721-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.A110fs
STAD	TCGA-CG-5721-01	RICTOR	ENST00000511516.1,ENST00000357387.3,ENST00000510711.1,ENST00000296782.5	chr5	38971978:38972061:38975638:38975706:38978684:38978750,	38975639	38975706	38975672	38975672	Frame_Shift_Del	T	-	p.M286fs
STAD	TCGA-CG-5721-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345823	122345823	Frame_Shift_Del	A	-	p.M460fs
STAD	TCGA-CG-5721-01	SPHKAP	ENST00000344657.5,ENST00000392056.3	chr2	228892199:228892259:228973547:228973655:228996695:228996801,	228973548	228973655	228973586	228973586	Frame_Shift_Del	T	-	p.I70fs
STAD	TCGA-CG-5721-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694105	156694105	Frame_Shift_Del	C	-	p.H262fs
STAD	TCGA-CG-5721-01	IRF1	ENST00000405885.2,ENST00000245414.4	chr5	131821358:131821408:131821942:131822065:131822248:131822331,	131821943	131822065	131822004	131822005	Frame_Shift_Del	CA	-	p.202_203del
STAD	TCGA-CG-5721-01	NAIP	ENST00000523981.1,ENST00000194097.4,ENST00000508426.2,ENST00000503719.2,ENST00000517649.1,ENST00000315147.8	chr5	70266073:70266295:70269955:70270120:70271986:70272055,	70269956	70270120	70269991	70269991	Frame_Shift_Del	A	-	p.F1271fs
STAD	TCGA-CG-5721-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-CG-5721-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-CG-5721-01	STAB1	ENST00000321725.6	chr3	52545665:52545761:52546356:52546452:52546611:52546659,	52546357	52546452	52546401	52546401	Frame_Shift_Del	C	-	p.C976fs
STAD	TCGA-CG-5721-01	KCTD10	ENST00000542262.1,ENST00000542858.1,ENST00000535747.1	chr12	109898440:109898610:109907319:109907533:109915064:109915094,	109907320	109907533	109907347	109907348	Frame_Shift_Ins	-	C	p.R64fs
STAD	TCGA-CG-5721-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977650	99977650	Frame_Shift_Del	A	-	p.D95fs
STAD	TCGA-CG-5721-01	CEP68	ENST00000377990.2,ENST00000260569.4	chr2	65301415:65301538:65305001:65305098:65309669:65309811,	65305002	65305098	65305008	65305011	Frame_Shift_Del	AAGA	-	p.671_672del
STAD	TCGA-CG-5721-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975472	13975473	Frame_Shift_Ins	-	G	p.T139fs
STAD	TCGA-CG-5721-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025921	97025921	Frame_Shift_Del	A	-	p.T466fs
STAD	TCGA-CG-5721-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000507717.1,ENST00000329966.6,ENST00000327681.6,ENST00000369233.2,ENST00000472914.2,ENST00000506871.1	chr6	99936075:99936171:99936556:99936696:99951640:99951649,	99936557	99936696	99936572	99936572	Frame_Shift_Del	A	-	p.N202fs
STAD	TCGA-CG-5721-01	TRPS1	ENST00000519076.1,ENST00000520276.1,ENST00000220888.5,ENST00000395715.3	chr8	116430557:116430680:116599227:116599831:116616099:116616277,	116599228	116599831	116599584	116599585	Frame_Shift_Del	TC	-	p.782_782del
STAD	TCGA-CG-5721-01	BPIFB1	ENST00000253354.1	chr20	31890164:31890218:31890721:31890880:31891763:31891831,	31890722	31890880	31890782	31890782	Frame_Shift_Del	T	-	p.E347fs
STAD	TCGA-CG-5721-01	ARID3A	ENST00000263620.3	chr19	964247:964431:964832:965080:966571:966868,	964833	965080	965040	965041	Frame_Shift_Ins	-	A	p.T386fs
STAD	TCGA-CG-5721-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373687	104373688	Frame_Shift_Ins	-	A	p.S82fs
STAD	TCGA-CG-5721-01	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74008086:74008170:74010506:74010657:74010996:74011190,	74010507	74010657	74010507	74010509	Frame_Shift_Del	CTT	-	p.791_791del
STAD	TCGA-CG-5721-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48080764	48080764	Frame_Shift_Del	T	-	p.E283fs
STAD	TCGA-CG-5721-01	PDE2A	ENST00000334456.5,ENST00000441209.2,ENST00000540345.1,ENST00000418754.2,ENST00000376450.3,ENST00000539367.1,ENST00000444035.2,ENST00000544570.1	chr11	72293487:72293610:72294481:72294559:72295244:72295357,	72294482	72294559	72294542	72294542	Frame_Shift_Del	T	-	p.V557X
STAD	TCGA-CG-5721-01	TMEM108	ENST00000393130.3,ENST00000321871.6	chr3	132948113:132948195:133098595:133100005:133109023:133109178,	133098596	133100005	133098772	133098772	Frame_Shift_Del	C	-	p.G72fs
STAD	TCGA-CG-5721-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818826	214818826	Frame_Shift_Del	A	-	p.S1971X
STAD	TCGA-CG-5721-01	LRBA	ENST00000510413.1,ENST00000507224.1,ENST00000535741.1,ENST00000357115.3	chr4	151773036:151774095:151788822:151789015:151789333:151789457,	151788823	151789015	151788975	151788975	Frame_Shift_Del	A	-	p.S872fs
STAD	TCGA-CG-5721-01	CYP39A1	ENST00000275016.2	chr6	46605565:46605715:46607230:46607405:46609899:46610035,	46607231	46607405	46607340	46607340	Frame_Shift_Del	T	-	p.M127fs
STAD	TCGA-CG-5721-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000452931.1,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000310931.4	chr2	242186470:242186557:242187417:242187531:242187658:242187763,	242187418	242187531	242187454	242187454	Frame_Shift_Del	T	-	p.C566fs
STAD	TCGA-CG-5721-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323671	59323672	Frame_Shift_Ins	-	A	p.V217fs
STAD	TCGA-CG-5721-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000459659.1,ENST00000484478.1	chr3	33863526:33863574:33866678:33866832:33867971:33868031,	33866679	33866832	33866810	33866811	Frame_Shift_Ins	-	T	p.V198fs
STAD	TCGA-CG-5721-01	NPAS3	ENST00000356141.4,ENST00000551492.1,ENST00000551634.1,ENST00000346562.2,ENST00000357798.5,ENST00000548645.1,ENST00000552874.1	chr14	34204446:34204538:34243542:34243736:34247671:34247778,	34243543	34243736	34243648	34243648	Frame_Shift_Del	C	-	p.P319fs
STAD	TCGA-CG-5721-01	SLC38A9	ENST00000396865.2,ENST00000515159.1,ENST00000524030.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54941616:54941723:54948356:54948551:54952542:54952602,54945037:54945142:54948356:54948551:54952542:54952602,	54948357	54948551	54948375	54948375	Frame_Shift_Del	A	-	p.S312X
STAD	TCGA-CG-5721-01	NFX1	ENST00000379521.4,ENST00000318524.6	chr9	33290542:33290595:33294417:33295425:33301260:33301419,	33294418	33295425	33294465	33294465	Frame_Shift_Del	A	-	p.E24fs
STAD	TCGA-CG-5721-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048868	42048868	Frame_Shift_Del	G	-	p.P534fs
STAD	TCGA-CG-5721-01	ENOSF1	ENST00000340116.7	chr18	677344:677444:677742:677872:678695:678737,677344:677444:677742:677872:683245:683380,	677743	677872	677751	677751	Frame_Shift_Del	T	-	p.K354fs
STAD	TCGA-CG-5721-01	CCAR1	ENST00000543719.1,ENST00000535016.1,ENST00000540210.1,ENST00000539539.1,ENST00000265872.6	chr10	70525644:70525836:70530962:70531202:70532744:70532856,	70530963	70531202	70531074	70531074	Frame_Shift_Del	A	-	p.D803fs
STAD	TCGA-CG-5721-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138713266	138713267	Frame_Shift_Del	GA	-	p.1081_1081del
STAD	TCGA-CG-5721-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151153218	151153218	Frame_Shift_Del	A	-	p.A990fs
STAD	TCGA-CG-5721-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829585	72829585	Frame_Shift_Del	T	-	p.C2333fs
STAD	TCGA-CG-5721-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057212	Frame_Shift_Del	AA	-	p.263_264del
STAD	TCGA-CG-5721-01	NUP205	ENST00000440390.2,ENST00000285968.6	chr7	135255852:135255995:135258401:135258573:135261017:135261162,	135258402	135258573	135258404	135258404	Frame_Shift_Del	A	-	p.P58fs
STAD	TCGA-CG-5721-01	ADAT1	ENST00000568001.1	chr16	75646701:75646759:75651039:75651170:75654163:75654232,	75651040	75651170	75651057	75651057	Frame_Shift_Del	A	-	p.F136fs
STAD	TCGA-CG-5721-01	DEPDC5	ENST00000266091.3,ENST00000448753.1,ENST00000535622.1,ENST00000382105.2,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400248.2	chr22	32289567:32289737:32293467:32293639:32297727:32297788,	32293468	32293639	32293527	32293527	Frame_Shift_Del	G	-	p.E1421fs
STAD	TCGA-CG-5721-01	DDR1	ENST00000376568.3,ENST00000376575.3,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8	chr6	30862364:30862448:30864397:30864642:30864790:30864823,30863180:30863291:30864397:30864642:30864790:30864823,	30864398	30864642	30864570	30864571	Frame_Shift_Ins	-	C	p.G599fs
STAD	TCGA-CG-5721-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30863180:30863291:30864507:30864642:30864790:30864823,	30864508	30864642	30864570	30864571	Frame_Shift_Ins	-	C	p.G599fs
STAD	TCGA-CG-5721-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564716	42564716	Frame_Shift_Del	G	-	p.L1943fs
STAD	TCGA-CG-5721-01	EFHC1	ENST00000480623.1,ENST00000433625.2,ENST00000371068.5,ENST00000538167.1	chr6	52329692:52329913:52334130:52334271:52343834:52344048,	52334131	52334271	52334208	52334208	Frame_Shift_Del	A	-	p.P405fs
STAD	TCGA-CG-5721-01	FMO3	ENST00000367755.4,ENST00000392085.2,ENST00000542847.1,ENST00000538429.1	chr1	171077256:171077362:171079938:171080138:171083146:171083502,	171079939	171080138	171080111	171080111	Frame_Shift_Del	A	-	p.E267fs
STAD	TCGA-CG-5721-01	IRX4	ENST00000513692.1,ENST00000231357.2,ENST00000505790.1	chr5	1879783:1879946:1880838:1880948:1881921:1882173,	1880839	1880948	1880905	1880905	Frame_Shift_Del	C	-	p.G114fs
STAD	TCGA-CG-5721-01	GNL2	ENST00000373062.3	chr1	38052911:38053096:38056306:38056446:38058312:38058407,	38056307	38056446	38056409	38056409	Frame_Shift_Del	T	-	p.F95fs
STAD	TCGA-CG-5721-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34444996	34444996	Frame_Shift_Del	A	-	p.S145fs
STAD	TCGA-CG-5721-01	HARS	ENST00000504366.1,ENST00000504156.1,ENST00000438307.2	chr5	140057239:140057338:140057492:140057600:140062684:140062804,140057239:140057338:140057492:140057600:140058586:140058712,	140057493	140057600	140057538	140057538	Frame_Shift_Del	C	-	p.C196fs
STAD	TCGA-CG-5721-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878533	89878534	Frame_Shift_Ins	-	G	p.P96fs
STAD	TCGA-CG-5721-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66096209:66096324:66135960:66136198:66188492:66188576,	66135961	66136198	66135985	66135985	Frame_Shift_Del	A	-	p.A207fs
STAD	TCGA-CG-5721-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729754	23729754	Frame_Shift_Del	C	-	p.V81fs
STAD	TCGA-CG-5721-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467121	58467121	Frame_Shift_Del	T	-	p.N763fs
STAD	TCGA-CG-5721-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394219	64394219	Frame_Shift_Del	G	-	p.R199fs
STAD	TCGA-CG-5721-01	FBN3	ENST00000270509.2,ENST00000601739.1,ENST00000600128.1	chr19	8174514:8174637:8175728:8175851:8175941:8176063,	8175729	8175851	8175743	8175743	Frame_Shift_Del	C	-	p.G1440fs
STAD	TCGA-CG-5721-01	ROR2	ENST00000550066.1,ENST00000375715.1,ENST00000375708.3	chr9	94488822:94489025:94493191:94493437:94495403:94495718,	94493192	94493437	94493292	94493292	Frame_Shift_Del	C	-	p.H362fs
STAD	TCGA-CG-5721-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000605788.1,ENST00000461421.1,ENST00000476468.1,ENST00000488254.2,ENST00000464969.2	chr10	103918949:103919065:103919189:103919325:103919652:103919695,	103919190	103919325	103919298	103919299	Frame_Shift_Ins	-	A	p.Q278fs
STAD	TCGA-CG-5721-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218255	134218255	Frame_Shift_Del	C	-	p.S84fs
STAD	TCGA-CG-5721-01	MRPL1	ENST00000315567.8,ENST00000511521.1	chr4	78792897:78793009:78804395:78804654:78806409:78806472,	78804396	78804654	78804445	78804445	Frame_Shift_Del	A	-	p.E64fs
STAD	TCGA-CG-5721-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
STAD	TCGA-D7-6817-01	ANK1	ENST00000524227.1	chr8	41529871:41529944:41530033:41530430:41542061:41542208,	41530034	41530430	41530028	41530034	Frame_Shift_Del	TCTGACC	-	p.1686_1688del
STAD	TCGA-BR-8679-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561145	32561149	Frame_Shift_Del	GAGAA	-	p.423_425del
STAD	TCGA-BR-8679-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579381	7579381	Frame_Shift_Del	G	-	p.Y103fs
STAD	TCGA-BR-8484-01	FAXDC2	ENST00000517938.1,ENST00000520581.1,ENST00000524250.1,ENST00000326080.5	chr5	154200819:154200986:154202031:154202137:154202946:154203152,	154202032	154202137	154202055	154202056	Frame_Shift_Del	AG	-	p.219_219del
STAD	TCGA-HU-A4H0-01	RSPRY1	ENST00000537866.1,ENST00000562768.1,ENST00000394420.4	chr16	57241969:57242022:57242986:57243099:57246883:57247010,	57242987	57243099	57243061	57243062	Frame_Shift_Ins	-	T	p.I160fs
STAD	TCGA-CD-A48C-01	CCL20	ENST00000473642.1,ENST00000358813.4,ENST00000409189.3	chr2	228680172:228680284:228681022:228681100:228681777:228682179,	228681023	228681100	228681080	228681081	Frame_Shift_Del	AT	-	p.83_83del
STAD	TCGA-CD-A48C-01	CNTROB	ENST00000380255.3,ENST00000576723.1,ENST00000571632.1,ENST00000576536.1,ENST00000565740.1,ENST00000563694.1,ENST00000380262.3	chr17	7851233:7851297:7851474:7851645:7851804:7851933,	7851475	7851645	7851480	7851483	Frame_Shift_Del	CTGA	-	p.738_739del
STAD	TCGA-BR-7197-01	ELP3	ENST00000521570.1,ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000524103.1,ENST00000521015.1,ENST00000523760.1	chr8	27965429:27965493:27967886:27967955:27970535:27970690,	27967887	27967955	27967927	27967928	Frame_Shift_Ins	-	CCTA	p.F145fs
STAD	TCGA-BR-A452-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937043	48937046	Frame_Shift_Del	ACAA	-	p.270_271del
STAD	TCGA-BR-A452-01	SNRNP70	ENST00000598441.1,ENST00000401730.1,ENST00000597936.1,ENST00000595231.1,ENST00000221448.5	chr19	49588751:49588893:49589661:49589818:49593547:49593610,	49589662	49589818	49589818	49589818	Frame_Shift_Del	G	-	p.E49fs
STAD	TCGA-BR-8487-01	KCNH4	ENST00000607371.1	chr17	40308912:40309136:40311752:40312453:40314265:40314339,	40311753	40312453	40312113	40312113	Frame_Shift_Del	G	-	p.P1000fs
STAD	TCGA-BR-8487-01	KCNH4	ENST00000264661.3	chr17	40308912:40309136:40311748:40312453:40314265:40314339,	40311749	40312453	40312113	40312113	Frame_Shift_Del	G	-	p.P1000fs
STAD	TCGA-BR-8487-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155143409:155143543:155145367:155145512:155148305:155148374,	155145368	155145512	155145472	155145472	Frame_Shift_Del	T	-	p.P677fs
STAD	TCGA-BR-8487-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153593716:153593854:153594391:153594592:153594675:153594814,	153594392	153594592	153594579	153594580	Frame_Shift_Ins	-	C	p.G414fs
STAD	TCGA-BR-8487-01	CAPZA2	ENST00000426421.1	chr7	116544230:116544437:116546316:116546396:116550286:116550365,116544230:116544437:116546316:116546396:116550266:116550348,	116546317	116546396	116546325	116546326	Frame_Shift_Ins	-	A	p.G145fs
STAD	TCGA-BR-8487-01	PFKL	ENST00000466134.1,ENST00000397961.2,ENST00000460521.1,ENST00000349048.4,ENST00000495274.1,ENST00000467315.1,ENST00000403390.1,ENST00000498841.1,ENST00000474114.1	chr21	45743648:45743801:45744373:45744538:45744738:45744800,	45744374	45744538	45744439	45744439	Frame_Shift_Del	G	-	p.M572fs
STAD	TCGA-BR-8487-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1,ENST00000513376.1	chr4	57237616:57237809:57244313:57244630:57248642:57248763,	57244314	57244630	57244505	57244505	Frame_Shift_Del	T	-	p.E160fs
STAD	TCGA-BR-8487-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36676993:36677286:36679728:36679962:36680496:36680691,	36679729	36679962	36679798	36679799	Frame_Shift_Ins	-	G	p.I310fs
STAD	TCGA-BR-8487-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.W386fs
STAD	TCGA-BR-8487-01	THBS2	ENST00000366787.3	chr6	169646291:169646376:169648511:169649068:169650827:169650901,	169648512	169649068	169648522	169648523	Frame_Shift_Del	CT	-	p.200_200del
STAD	TCGA-BR-8487-01	DPPA4	ENST00000495679.1,ENST00000487299.1,ENST00000335658.6	chr3	109047864:109047935:109049370:109049659:109050580:109050631,	109049371	109049659	109049606	109049606	Frame_Shift_Del	T	-	p.L149X
STAD	TCGA-BR-8487-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640807	17640808	Frame_Shift_Ins	-	G	p.I116fs
STAD	TCGA-BR-8487-01	SLC38A9	ENST00000396865.2,ENST00000511233.1,ENST00000515159.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54931371:54931485:54941616:54941723:54945034:54945142,	54941617	54941723	54941671	54941671	Frame_Shift_Del	A	-	p.I372fs
STAD	TCGA-BR-8487-01	MATK	ENST00000395040.2,ENST00000310132.6,ENST00000395045.2	chr19	3777972:3778420:3778506:3778593:3778989:3779185,	3778507	3778593	3778509	3778509	Frame_Shift_Del	T	-	p.M429fs
STAD	TCGA-BR-8487-01	MATK	ENST00000585778.1	chr19	3777972:3778420:3778506:3778590:3778989:3779185,	3778507	3778590	3778509	3778509	Frame_Shift_Del	T	-	p.M429fs
STAD	TCGA-BR-8487-01	EIF2A	ENST00000477551.1,ENST00000465535.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150285983:150286079:150289744:150290316:150293435:150293549,	150289745	150290316	150289746	150289746	Frame_Shift_Del	A	-	p.P271fs
STAD	TCGA-BR-8487-01	RIMS2	ENST00000262231.10,ENST00000515551.1,ENST00000507677.1,ENST00000507740.1,ENST00000504942.2,ENST00000436393.2,ENST00000408894.2,ENST00000406091.3	chr8	104924359:104924400:104927722:104927822:104928641:104928765,	104927723	104927822	104927779	104927779	Frame_Shift_Del	A	-	p.V623fs
STAD	TCGA-BR-8487-01	CPED1	ENST00000310396.5	chr7	120907268:120907356:120911337:120911484:120935493:120935652,	120911338	120911484	120911387	120911388	Frame_Shift_Ins	-	A	p.A924fs
STAD	TCGA-BR-8487-01	GATA3	ENST00000379328.3	chr10	8097249:8097859:8100267:8100804:8105955:8106101,	8100268	8100804	8100728	8100728	Frame_Shift_Del	C	-	p.F234fs
STAD	TCGA-BR-8487-01	USP8	ENST00000433963.1,ENST00000425032.3,ENST00000559329.1,ENST00000560730.1,ENST00000396444.3,ENST00000307179.4	chr15	50757243:50757388:50763829:50763992:50769045:50769190,	50763830	50763992	50763891	50763892	Frame_Shift_Ins	-	G	p.R250fs
STAD	TCGA-BR-8487-01	RANGRF	ENST00000580434.1	chr17	8192273:8192390:8192575:8192732:8193130:8193410,	8192576	8192732	8192722	8192722	Frame_Shift_Del	A	-	p.E114fs
STAD	TCGA-BR-8487-01	SHC1	ENST00000368453.4,ENST00000448116.2	chr1	154938018:154938257:154938421:154938556:154938637:154938707,	154938422	154938556	154938468	154938468	Frame_Shift_Del	G	-	p.N448fs
STAD	TCGA-BR-8487-01	SHC1	ENST00000368445.5,ENST00000444664.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938018:154938257:154938421:154938553:154938637:154938707,	154938422	154938553	154938468	154938468	Frame_Shift_Del	G	-	p.N448fs
STAD	TCGA-BR-8487-01	WDR90	ENST00000549091.1,ENST00000553080.1,ENST00000552728.1,ENST00000549024.1,ENST00000315764.4,ENST00000547407.1,ENST00000293879.4,ENST00000547944.1	chr16	716672:716792:716904:716989:717431:717829,	716905	716989	716929	716929	Frame_Shift_Del	T	-	p.P1676fs
STAD	TCGA-BR-8487-01	TESK1	ENST00000336395.5	chr9	35606233:35606282:35606833:35606980:35607578:35607669,35606233:35606282:35606833:35606980:35607323:35607406,	35606834	35606980	35606842	35606843	Frame_Shift_Ins	-	G	p.N133fs
STAD	TCGA-BR-8487-01	RERE	ENST00000476556.1,ENST00000337907.3,ENST00000377464.1,ENST00000400908.2	chr1	8414685:8415180:8415478:8415659:8416159:8416306,	8415479	8415659	8415652	8415652	Frame_Shift_Del	G	-	p.Y1499fs
STAD	TCGA-BR-8487-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022426	11022426	Frame_Shift_Del	A	-	p.P180fs
STAD	TCGA-BR-8487-01	TBC1D4	ENST00000431480.2,ENST00000488955.1	chr13	75894149:75894173:75898372:75898537:75900332:75900386,75886917:75887034:75898372:75898537:75900332:75900386,	75898373	75898537	75898394	75898394	Frame_Shift_Del	G	-	p.P726fs
STAD	TCGA-BR-8487-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262564	25262564	Frame_Shift_Del	G	-	p.V112fs
STAD	TCGA-BR-8487-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562545	32562545	Frame_Shift_Del	T	-	p.D890fs
STAD	TCGA-BR-8487-01	CASP10	ENST00000438843.1	chr2	202047938:202048031:202050493:202050847:202057706:202057842,	202050494	202050847	202050593	202050593	Frame_Shift_Del	G	-	p.L31fs
STAD	TCGA-BR-8487-01	ARL6IP4	ENST00000315580.5,ENST00000536502.1,ENST00000543566.1,ENST00000357866.4,ENST00000439686.2,ENST00000426960.2,ENST00000412505.2,ENST00000454885.2,ENST00000453766.2,ENST00000539770.1	chr12	123466577:123466621:123467015:123467085:123467166:123467223,	123467016	123467085	123467067	123467068	Frame_Shift_Del	AC	-	p.336_336del
STAD	TCGA-BR-8487-01	IFT172	ENST00000507184.1,ENST00000260570.3,ENST00000443889.1	chr2	27676496:27676606:27676848:27677029:27677220:27677285,	27676849	27677029	27676932	27676932	Frame_Shift_Del	C	-	p.A1210fs
STAD	TCGA-BR-8487-01	SNUPN	ENST00000569817.1,ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75897539:75897568:75899556:75899654:75901898:75901992,	75899557	75899654	75899572	75899573	Frame_Shift_Ins	-	G	p.P195fs
STAD	TCGA-BR-8487-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645339	Frame_Shift_Del	A	-	p.A201fs
STAD	TCGA-BR-8487-01	TOR2A	ENST00000373281.5,ENST00000373284.5	chr9	130495663:130495839:130496577:130496843:130497398:130497554,	130496578	130496843	130496603	130496604	Frame_Shift_Ins	-	G	p.H131fs
STAD	TCGA-BR-8487-01	TENM2	ENST00000403607.2	chr5	167551854:167552055:167553758:167553944:167589615:167589762,	167553759	167553944	167553862	167553862	Frame_Shift_Del	C	-	p.H771fs
STAD	TCGA-BR-8487-01	TENM2	ENST00000518659.1,ENST00000519204.1,ENST00000520394.1	chr5	167551854:167552055:167553758:167553971:167589615:167589762,	167553759	167553971	167553862	167553862	Frame_Shift_Del	C	-	p.H771fs
STAD	TCGA-BR-8487-01	ARHGAP33	ENST00000590893.1,ENST00000314737.5,ENST00000007510.4	chr19	36266476:36266566:36268546:36268644:36268725:36268810,	36268547	36268644	36268609	36268610	Frame_Shift_Ins	-	G	p.A23fs
STAD	TCGA-BR-8487-01	NSUN3	ENST00000476588.1	chr3	93781904:93781982:93783280:93783390:93802950:93803020,	93783281	93783390	93783344	93783345	Frame_Shift_Ins	-	A	p.E26fs
STAD	TCGA-BR-8487-01	PABPC4	ENST00000372856.3,ENST00000372858.3,ENST00000372857.3,ENST00000437136.1,ENST00000372862.3	chr1	40027744:40027875:40027994:40028088:40029285:40029401,	40027995	40028088	40028016	40028016	Frame_Shift_Del	G	-	p.Q581fs
STAD	TCGA-BR-8487-01	PABPC4	ENST00000421687.2	chr1	40027744:40027875:40027994:40028052:40029285:40029401,	40027995	40028052	40028016	40028016	Frame_Shift_Del	G	-	p.Q581fs
STAD	TCGA-BR-8487-01	TTC27	ENST00000448773.1,ENST00000317907.4	chr2	32855589:32855767:32858942:32859072:32865336:32865435,	32858943	32859072	32859010	32859010	Frame_Shift_Del	C	-	p.G111fs
STAD	TCGA-BR-8487-01	ZC3H14	ENST00000557607.1,ENST00000302216.8	chr14	89042183:89042284:89044328:89044484:89068267:89068353,89042183:89042284:89044328:89044484:89063077:89063152,89042183:89042284:89044328:89044484:89073586:89073707,	89044329	89044484	89044473	89044473	Frame_Shift_Del	A	-	p.E423fs
STAD	TCGA-BR-8487-01	ZC3H14	ENST00000556110.1	chr14	89042183:89042284:89044336:89044484:89068267:89068353,	89044337	89044484	89044473	89044473	Frame_Shift_Del	A	-	p.E423fs
STAD	TCGA-BR-8487-01	LRRC45	ENST00000306688.3,ENST00000583302.1,ENST00000581227.1	chr17	79985261:79985320:79985549:79985627:79985886:79986022,	79985550	79985627	79985564	79985564	Frame_Shift_Del	G	-	p.R283fs
STAD	TCGA-BR-8487-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169497152:169497332:169498845:169499056:169500023:169500260,	169498846	169499056	169499051	169499051	Frame_Shift_Del	T	-	p.D1739fs
STAD	TCGA-BR-8487-01	SSUH2	ENST00000420394.1,ENST00000544814.1,ENST00000413305.1,ENST00000435138.1,ENST00000415132.1,ENST00000495366.1,ENST00000455157.2,ENST00000317371.4,ENST00000341795.3	chr3	8665234:8665342:8667227:8667333:8667914:8668007,	8667228	8667333	8667234	8667235	Frame_Shift_Ins	-	T	p.N289fs
STAD	TCGA-BR-8487-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60518101:60518117:60522197:60522304:60525061:60525127,	60522198	60522304	60522297	60522298	Frame_Shift_Ins	-	A	p.F303fs
STAD	TCGA-BR-8487-01	SLC38A7	ENST00000219320.4,ENST00000564010.1,ENST00000566598.1,ENST00000570101.1	chr16	58704016:58704071:58704948:58705148:58705999:58706147,	58704949	58705148	58705111	58705111	Frame_Shift_Del	C	-	p.V357fs
STAD	TCGA-BR-8487-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554288.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53347961:53348187:53360010:53360145:53385840:53386057,	53360011	53360145	53360082	53360082	Frame_Shift_Del	T	-	p.K152fs
STAD	TCGA-BR-8487-01	VSIG4	ENST00000412866.2	chrX	65247891:65247954:65253315:65253672:65259785:65259902,	65253316	65253672	65253607	65253607	Frame_Shift_Del	A	-	p.C41fs
STAD	TCGA-BR-8487-01	ZNF692	ENST00000476503.1	chr1	249148135:249148250:249149578:249149657:249149923:249150138,	249149579	249149657	249149644	249149645	Frame_Shift_Del	TT	-	p.330_330del
STAD	TCGA-BR-8487-01	TRIP4	ENST00000557834.1	chr15	64680060:64680247:64686205:64686314:64687596:64687730,	64686206	64686314	64686218	64686218	Frame_Shift_Del	A	-	p.G58fs
STAD	TCGA-BR-8487-01	CAMSAP2	ENST00000358823.2,ENST00000236925.4,ENST00000413307.2	chr1	200729966:200730226:200776503:200776665:200784688:200784772,	200776504	200776665	200776602	200776602	Frame_Shift_Del	T	-	p.A166fs
STAD	TCGA-BR-8487-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.N865fs
STAD	TCGA-BR-8487-01	PAX8	ENST00000497038.2,ENST00000485840.1,ENST00000429538.3	chr2	113984731:113984833:113992970:113993159:113994177:113994269,	113992971	113993159	113993122	113993122	Frame_Shift_Del	G	-	p.E313fs
STAD	TCGA-BR-8487-01	TAPBP	ENST00000426633.2,ENST00000489157.1,ENST00000456592.2,ENST00000475304.1,ENST00000434618.2	chr6	33271904:33271994:33272073:33272415:33272765:33272838,	33272074	33272415	33272175	33272175	Frame_Shift_Del	G	-	p.P370fs
STAD	TCGA-BR-8487-01	AP4M1	ENST00000421755.1	chr7	99704035:99704137:99704280:99704535:99707813:99707942,	99704281	99704535	99704296	99704296	Frame_Shift_Del	C	-	p.G384fs
STAD	TCGA-BR-8487-01	SLC17A3	ENST00000509714.1,ENST00000503922.1,ENST00000361703.6,ENST00000360657.3	chr6	25855371:25855458:25861851:25861939:25862460:25862672,	25861852	25861939	25861923	25861923	Frame_Shift_Del	C	-	p.G185fs
STAD	TCGA-BR-8487-01	INO80B	ENST00000409917.1,ENST00000452361.1,ENST00000441673.1,ENST00000431187.1	chr2	74682243:74682301:74682532:74682725:74682944:74683063,	74682533	74682725	74682585	74682586	Frame_Shift_Ins	-	A	p.K37fs
STAD	TCGA-BR-8487-01	INO80B	ENST00000409493.2	chr2	74682243:74682301:74682517:74682725:74682944:74683063,	74682518	74682725	74682585	74682586	Frame_Shift_Ins	-	A	p.K37fs
STAD	TCGA-BR-8487-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151191	13151192	Frame_Shift_Ins	-	C	p.G23fs
STAD	TCGA-BR-8487-01	PLEKHH3	ENST00000412503.1,ENST00000591490.1,ENST00000293349.6,ENST00000591196.1,ENST00000591022.1,ENST00000456950.2	chr17	40825193:40825314:40825416:40825574:40825660:40825852,	40825417	40825574	40825491	40825491	Frame_Shift_Del	C	-	p.V192fs
STAD	TCGA-BR-8487-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986250	2986251	Frame_Shift_Ins	-	A	p.G21fs
STAD	TCGA-BR-8487-01	NEK4	ENST00000233027.5,ENST00000383721.4,ENST00000535191.1,ENST00000461689.1	chr3	52785947:52786352:52794810:52794952:52797485:52797640,	52794811	52794952	52794938	52794938	Frame_Shift_Del	T	-	p.N279fs
STAD	TCGA-BR-8487-01	SLC26A6	ENST00000395550.2,ENST00000469693.1,ENST00000383733.3,ENST00000496469.1,ENST00000337000.8,ENST00000358747.6,ENST00000420764.2,ENST00000480524.1,ENST00000455886.2,ENST00000462009.2,ENST00000307364.6	chr3	48665901:48665974:48666054:48666147:48667074:48667144,	48666055	48666147	48666129	48666129	Frame_Shift_Del	C	-	p.V540fs
STAD	TCGA-BR-8487-01	ATXN2L	ENST00000325215.6,ENST00000564304.1,ENST00000382686.4,ENST00000395547.2,ENST00000336783.4,ENST00000340394.8,ENST00000568266.1,ENST00000563314.1,ENST00000570200.1	chr16	28837560:28837711:28838182:28838307:28840721:28840813,	28838183	28838307	28838262	28838262	Frame_Shift_Del	G	-	p.E232fs
STAD	TCGA-BR-8487-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310486	33310486	Frame_Shift_Del	A	-	p.T154fs
STAD	TCGA-BR-8487-01	LIG3	ENST00000592690.1	chr17	33307595:33307641:33310250:33310571:33313006:33313150,	33310251	33310571	33310486	33310486	Frame_Shift_Del	A	-	p.T154fs
STAD	TCGA-BR-8487-01	BEND6	ENST00000370746.3,ENST00000370748.3,ENST00000370745.1	chr6	56820169:56820258:56846508:56846728:56857175:56857353,	56846509	56846728	56846680	56846681	Frame_Shift_Del	AG	-	p.24_24del
STAD	TCGA-BR-8487-01	AGRN	ENST00000379370.2	chr1	979713:979819:980540:980657:980738:980903,	980541	980657	980571	980571	Frame_Shift_Del	C	-	p.A762fs
STAD	TCGA-BR-8487-01	HS1BP3	ENST00000402541.1,ENST00000304031.3	chr2	20838195:20838412:20840732:20840940:20845099:20845255,	20840733	20840940	20840864	20840864	Frame_Shift_Del	G	-	p.P92fs
STAD	TCGA-BR-8487-01	BZW1	ENST00000452790.2,ENST00000409600.1,ENST00000409226.1	chr2	201684704:201684843:201685905:201686028:201686869:201686893,	201685906	201686028	201685969	201685970	Frame_Shift_Del	AG	-	p.422_422del
STAD	TCGA-BR-8487-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635594	33635594	Frame_Shift_Del	A	-	p.E793fs
STAD	TCGA-BR-8487-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
STAD	TCGA-BR-8487-01	FAM214B	ENST00000378566.1	chr9	35107377:35107565:35108124:35108346:35108590:35108734,	35108125	35108346	35108148	35108148	Frame_Shift_Del	C	-	p.A42fs
STAD	TCGA-BR-8487-01	FBXO25	ENST00000382824.1,ENST00000352684.2	chr8	363072:363213:381340:381444:385614:385700,	381341	381444	381399	381399	Frame_Shift_Del	A	-	p.S64fs
STAD	TCGA-BR-8487-01	ANKS3	ENST00000591185.1,ENST00000592077.1,ENST00000585773.1,ENST00000589035.1,ENST00000590803.1,ENST00000590193.1,ENST00000446014.2,ENST00000304283.4,ENST00000591653.1	chr16	4747017:4747105:4747333:4747417:4747977:4748063,	4747334	4747417	4747357	4747358	Frame_Shift_Ins	-	G	p.L624fs
STAD	TCGA-BR-8487-01	MNDA	ENST00000368141.4	chr1	158813068:158813205:158813744:158813912:158815376:158815793,	158813745	158813912	158813814	158813814	Frame_Shift_Del	C	-	p.K157fs
STAD	TCGA-BR-8487-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496635	15496636	Frame_Shift_Ins	-	G	p.L393fs
STAD	TCGA-BR-8487-01	ATG13	ENST00000529655.1,ENST00000527907.1,ENST00000524625.1,ENST00000451945.1,ENST00000530500.1	chr11	46679073:46679172:46680941:46681035:46686932:46687069,	46680942	46681035	46681011	46681012	Frame_Shift_Del	TT	-	p.255_255del
STAD	TCGA-BR-8487-01	COL11A2	ENST00000341947.2,ENST00000457788.1,ENST00000374714.1	chr6	33148887:33148947:33151921:33152101:33153477:33153555,33148887:33148947:33151921:33152101:33154403:33154595,33148887:33148947:33151921:33152101:33152768:33152831,	33151922	33152101	33152075	33152075	Frame_Shift_Del	G	-	p.T323fs
STAD	TCGA-BR-8487-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
STAD	TCGA-BR-8487-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42046123	42046124	Frame_Shift_Ins	-	T	p.R1449fs
STAD	TCGA-BR-8487-01	PSD	ENST00000406432.1,ENST00000020673.5	chr10	104174619:104174986:104175773:104175876:104176141:104176878,	104175774	104175876	104175781	104175781	Frame_Shift_Del	G	-	p.S251fs
STAD	TCGA-BR-8487-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5240209:5240343:5243911:5244493:5245786:5246056,	5243912	5244493	5244243	5244243	Frame_Shift_Del	G	-	p.S414fs
STAD	TCGA-BR-8487-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112461	36112461	Frame_Shift_Del	A	-	p.Q683fs
STAD	TCGA-BR-8487-01	SIRT6	ENST00000601571.1,ENST00000601488.1,ENST00000597896.1,ENST00000601069.1	chr19	4179100:4179283:4180778:4180906:4182207:4182276,4179100:4179283:4180778:4180906:4182470:4182497,4177082:4177135:4180778:4180906:4182470:4182497,	4180779	4180906	4180893	4180893	Frame_Shift_Del	G	-	p.P27fs
STAD	TCGA-BR-8487-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091415	35091416	Frame_Shift_Del	CA	-	p.823_824del
STAD	TCGA-BR-8487-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919294	57919295	Frame_Shift_Ins	-	G	p.P181fs
STAD	TCGA-BR-8487-01	TMEM173	ENST00000507297.1,ENST00000503287.1,ENST00000330794.4	chr5	138855929:138856039:138856913:138857100:138857854:138858091,	138856914	138857100	138857068	138857068	Frame_Shift_Del	G	-	p.L265fs
STAD	TCGA-BR-8487-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8751798	8751798	Frame_Shift_Del	C	-	p.E347fs
STAD	TCGA-BR-8487-01	FBXO24	ENST00000465843.1,ENST00000474649.1,ENST00000241071.6,ENST00000360609.2	chr7	100184248:100184287:100187599:100187698:100187796:100187938,	100187600	100187698	100187651	100187652	Frame_Shift_Ins	-	G	p.R69fs
STAD	TCGA-BR-8487-01	MEF2D	ENST00000464356.2,ENST00000475587.2,ENST00000360595.3,ENST00000368240.2,ENST00000348159.4,ENST00000340875.5,ENST00000353795.3	chr1	156437419:156437448:156437784:156438091:156438571:156438812,	156437785	156438091	156438036	156438036	Frame_Shift_Del	G	-	p.H435fs
STAD	TCGA-BR-8487-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128856	68128856	Frame_Shift_Del	G	-	p.P1552fs
STAD	TCGA-BR-8487-01	ADSS	ENST00000366535.3,ENST00000462358.1	chr1	244586136:244586218:244587254:244587362:244587622:244587689,	244587255	244587362	244587345	244587345	Frame_Shift_Del	T	-	p.K164fs
STAD	TCGA-BR-8487-01	FBXO24	ENST00000241071.6,ENST00000468962.1,ENST00000488079.1,ENST00000427939.2	chr7	100192005:100192164:100192724:100192846:100193197:100193244,	100192725	100192846	100192729	100192729	Frame_Shift_Del	G	-	p.Q357fs
STAD	TCGA-BR-8487-01	VPS35	ENST00000568784.2,ENST00000299138.7	chr16	46693588:46694563:46695629:46695773:46696154:46696394,	46695630	46695773	46695735	46695735	Frame_Shift_Del	T	-	p.A703fs
STAD	TCGA-BR-8487-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740427	62740427	Frame_Shift_Del	G	-	p.Q117fs
STAD	TCGA-BR-8487-01	BTG3	ENST00000348354.6	chr21	18977177:18977315:18981289:18981470:18985016:18985162,	18981290	18981470	18981391	18981391	Frame_Shift_Del	T	-	p.E25fs
STAD	TCGA-BR-8487-01	ERCC3	ENST00000445889.1,ENST00000426778.1,ENST00000493187.2,ENST00000285398.2	chr2	128028911:128029029:128030440:128030537:128036748:128036951,	128030441	128030537	128030506	128030506	Frame_Shift_Del	C	-	p.E588fs
STAD	TCGA-BR-8487-01	GAPVD1	ENST00000467750.1,ENST00000497580.1,ENST00000265956.4,ENST00000495955.1,ENST00000394084.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128061200:128061385:128064261:128065105:128067341:128067428,	128064262	128065105	128064303	128064303	Frame_Shift_Del	T	-	p.I76fs
STAD	TCGA-BR-8487-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128443	202128443	Frame_Shift_Del	T	-	p.T135fs
STAD	TCGA-BR-8487-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128443	202128443	Frame_Shift_Del	T	-	p.T135fs
STAD	TCGA-BR-8487-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128443	202128443	Frame_Shift_Del	T	-	p.T135fs
STAD	TCGA-BR-8487-01	PTPN7	ENST00000476061.1	chr1	202127245:202127429:202128408:202128469:202129672:202129722,	202128409	202128469	202128443	202128443	Frame_Shift_Del	T	-	p.T135fs
STAD	TCGA-BR-8487-01	LAMP2	ENST00000200639.4	chrX	119565102:119565317:119575584:119575749:119576453:119576517,	119575585	119575749	119575705	119575705	Frame_Shift_Del	G	-	p.L325fs
STAD	TCGA-BR-8487-01	GCFC2	ENST00000321027.3,ENST00000541687.1,ENST00000472230.1,ENST00000470197.1,ENST00000427862.1,ENST00000409857.3	chr2	75893054:75893179:75897263:75897410:75899075:75899142,	75897264	75897410	75897274	75897274	Frame_Shift_Del	T	-	p.K698fs
STAD	TCGA-BR-8487-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
STAD	TCGA-BR-8487-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
STAD	TCGA-BR-8487-01	INPP5F	ENST00000361976.2	chr10	121556972:121557152:121558054:121558122:121563684:121563809,	121558055	121558122	121558113	121558114	Frame_Shift_Ins	-	A	p.Y369fs
STAD	TCGA-BR-8487-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174185	105174185	Frame_Shift_Del	C	-	p.S527fs
STAD	TCGA-BR-4279-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954432	62954433	Frame_Shift_Del	GT	-	p.1190_1191del
STAD	TCGA-BR-4279-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451842	155451843	Frame_Shift_Ins	-	T	p.K273fs
STAD	TCGA-BR-7703-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1,ENST00000557425.1	chr14	75002634:75002703:75016565:75016668:75017766:75018053,	75016566	75016668	75016599	75016599	Frame_Shift_Del	C	-	p.V586fs
STAD	TCGA-BR-7703-01	LRP1B	ENST00000389484.3,ENST00000437977.1,ENST00000442974.1	chr2	141027810:141027915:141031992:141032167:141055376:141055538,	141031993	141032167	141032034	141032034	Frame_Shift_Del	C	-	p.H4368fs
STAD	TCGA-BR-7703-01	RMND1	ENST00000367303.4	chr6	151757580:151757689:151766442:151766960:151773150:151773254,	151766443	151766960	151766726	151766726	Frame_Shift_Del	T	-	p.K74fs
STAD	TCGA-BR-7703-01	TMC8	ENST00000589691.1,ENST00000318430.5	chr17	76134085:76134269:76134429:76134560:76134654:76134705,	76134430	76134560	76134523	76134524	Frame_Shift_Ins	-	T	p.L543fs
STAD	TCGA-BR-7703-01	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110086456	110086456	Frame_Shift_Del	C	-	p.A271fs
STAD	TCGA-BR-7703-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000591529.1,ENST00000587672.1,ENST00000589205.1,ENST00000426948.2,ENST00000443826.3	chr19	3011019:3011158:3013666:3013816:3014567:3014612,	3013667	3013816	3013795	3013796	Frame_Shift_Ins	-	G	p.S263fs
STAD	TCGA-BR-7703-01	PSMD12	ENST00000356126.3,ENST00000357146.4,ENST00000584008.1	chr17	65338301:65338379:65340721:65340896:65341860:65341973,	65340722	65340896	65340757	65340757	Frame_Shift_Del	T	-	p.R350fs
STAD	TCGA-BR-7703-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135592	144135593	Frame_Shift_Ins	-	A	p.A821fs
STAD	TCGA-BR-7703-01	RNF167	ENST00000262482.6	chr17	4843593:4843655:4843781:4844288:4844371:4844452,	4843782	4844288	4844271	4844272	Frame_Shift_Ins	-	G	p.R23fs
STAD	TCGA-BR-7703-01	RNF167	ENST00000573404.1	chr17	4843593:4843655:4844167:4844288:4844371:4844452,4843781:4844021:4844167:4844288:4844371:4844452,4843414:4843525:4844167:4844288:4844371:4844452,	4844168	4844288	4844271	4844272	Frame_Shift_Ins	-	G	p.R23fs
STAD	TCGA-BR-7703-01	RNF167	ENST00000576229.1	chr17	4843781:4844021:4844217:4844288:4844371:4844452,	4844218	4844288	4844271	4844272	Frame_Shift_Ins	-	G	p.R23fs
STAD	TCGA-BR-7703-01	ADAMTS12	ENST00000515401.1,ENST00000352040.3	chr5	33751508:33751653:33881223:33881585:33891834:33892046,	33881224	33881585	33881400	33881401	Frame_Shift_Ins	-	A	p.N105_L106delinsX
STAD	TCGA-BR-7703-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50929618:50929790:50931620:50931745:50935536:50935750,	50931621	50931745	50931657	50931658	Frame_Shift_Ins	-	C	p.G208fs
STAD	TCGA-BR-7703-01	AKAP13	ENST00000394518.2,ENST00000560579.1,ENST00000361243.2,ENST00000394510.2	chr15	86278222:86278381:86278790:86278861:86279320:86279365,	86278791	86278861	86278855	86278855	Frame_Shift_Del	A	-	p.L2506fs
STAD	TCGA-BR-7703-01	SNX29	ENST00000562510.1,ENST00000306030.3,ENST00000564791.1,ENST00000566228.1,ENST00000323433.4	chr16	12450109:12450136:12492302:12492358:12497304:12497386,	12492303	12492358	12492337	12492338	Frame_Shift_Del	AG	-	p.645_645del
STAD	TCGA-BR-7703-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
STAD	TCGA-BR-7703-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
STAD	TCGA-BR-7703-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
STAD	TCGA-BR-7703-01	ZC3H7A	ENST00000571405.1,ENST00000575984.1,ENST00000355758.4,ENST00000396516.2	chr16	11844450:11845362:11846524:11846688:11850092:11850226,	11846525	11846688	11846657	11846657	Frame_Shift_Del	T	-	p.N865fs
STAD	TCGA-BR-7703-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89042786:89042944:89052212:89052365:89052954:89053069,	89052213	89052365	89052270	89052271	Frame_Shift_Ins	-	T	p.N158fs
STAD	TCGA-BR-7703-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148677798:148677913:148680541:148680680:148683599:148683730,	148680542	148680680	148680608	148680608	Frame_Shift_Del	T	-	p.A381fs
STAD	TCGA-BR-7703-01	SOS1	ENST00000426016.1,ENST00000402219.2	chr2	39214613:39214732:39222263:39222528:39224062:39224179,39216410:39216455:39222263:39222528:39224062:39224179,	39222264	39222528	39222520	39222520	Frame_Shift_Del	T	-	p.Y1031fs
STAD	TCGA-BR-7703-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248899	44248899	Frame_Shift_Del	C	-	p.G204fs
STAD	TCGA-BR-7703-01	ARHGAP30	ENST00000461003.1,ENST00000368015.1,ENST00000490279.1,ENST00000368016.3,ENST00000368013.3	chr1	161019384:161019479:161021103:161021505:161022075:161022153,	161021104	161021505	161021106	161021106	Frame_Shift_Del	G	-	p.P473fs
STAD	TCGA-BR-7703-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101959	168101960	Frame_Shift_Ins	-	T	p.L1353fs
STAD	TCGA-BR-7703-01	DDX50	ENST00000373585.3,ENST00000460470.1	chr10	70673182:70673332:70673814:70673960:70679587:70679737,	70673815	70673960	70673882	70673882	Frame_Shift_Del	A	-	p.A337fs
STAD	TCGA-BR-7703-01	TMC5	ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19451281:19452148:19455402:19455572:19460863:19460953,	19455403	19455572	19455473	19455474	Frame_Shift_Ins	-	G	p.W287fs
STAD	TCGA-BR-7703-01	SPAG17	ENST00000336338.5,ENST00000437255.1	chr1	118512678:118512739:118514485:118514670:118516047:118516184,	118514486	118514670	118514590	118514590	Frame_Shift_Del	A	-	p.G2075fs
STAD	TCGA-BR-7703-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959067	111959068	Frame_Shift_Ins	-	T	p.R345fs
STAD	TCGA-BR-8486-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579395	7579396	Frame_Shift_Ins	-	C	p.P98fs
STAD	TCGA-CG-4449-01	BIRC6	ENST00000421745.2	chr2	32670588:32670736:32673862:32673996:32678875:32679010,	32673863	32673996	32673875	32673876	Frame_Shift_Ins	-	A	p.Y1499fs
STAD	TCGA-CG-4449-01	ATP10B	ENST00000521033.1,ENST00000326831.3,ENST00000517802.1,ENST00000327245.5	chr5	160063188:160063316:160067467:160067599:160071144:160071251,	160067468	160067599	160067471	160067472	Frame_Shift_Ins	-	A	p.V333fs
STAD	TCGA-CG-4449-01	ZNF384	ENST00000361959.3,ENST00000396801.3	chr12	6779925:6780004:6781515:6781698:6782381:6782561,	6781516	6781698	6781674	6781815	Frame_Shift_Del	CTCCGTGTGCATCTTGGAGTGGATCCTGCCGGAGAGGAGAGGAGGGAAGGGGGGAGGAGGAAGCAGTTCGACACCAGGGGCTCAGCTCTCTGCTGGGTGAAATGACGTTGCTTGACGGATGAGAGCACCCCCTTCCTCCCTC	-	p.304_313del
STAD	TCGA-BR-4280-01	TEX10	ENST00000374902.4	chr9	103064367:103064586:103065913:103066124:103070781:103070963,	103065914	103066124	103066107	103066108	Frame_Shift_Ins	-	C	p.V828fs
STAD	TCGA-BR-4280-01	TIE1	ENST00000538015.1,ENST00000372476.3,ENST00000441333.2	chr1	43772510:43772666:43772812:43772944:43773102:43773243,	43772813	43772944	43772910	43772910	Frame_Shift_Del	C	-	p.C246fs
STAD	TCGA-BR-4280-01	ECT2L	ENST00000401414.3,ENST00000423192.1,ENST00000367682.2	chr6	139134308:139134477:139135627:139135740:139159488:139159541,	139135628	139135740	139135710	139135710	Frame_Shift_Del	T	-	p.I50fs
STAD	TCGA-BR-4280-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-BR-4280-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-BR-4280-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748661	43748661	Frame_Shift_Del	T	-	p.E716fs
STAD	TCGA-BR-4280-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232950	19232950	Frame_Shift_Del	A	-	p.S467X
STAD	TCGA-BR-4280-01	BUB1B	ENST00000287598.6,ENST00000412359.3	chr15	40475924:40476084:40477365:40477580:40477751:40477843,	40477366	40477580	40477506	40477506	Frame_Shift_Del	C	-	p.A297fs
STAD	TCGA-BR-4280-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284744	63284744	Frame_Shift_Del	A	-	p.V154fs
STAD	TCGA-BR-4280-01	MMP11	ENST00000434318.1	chr22	24123450:24123596:24123974:24124670:24125597:24125628,	24123975	24124670	24124456	24124456	Frame_Shift_Del	C	-	p.G373fs
STAD	TCGA-BR-4280-01	MMP11	ENST00000215743.3,ENST00000465385.1	chr22	24123450:24123596:24124412:24124670:24125597:24125628,	24124413	24124670	24124456	24124456	Frame_Shift_Del	C	-	p.G373fs
STAD	TCGA-BR-4280-01	ZNF506	ENST00000590766.1,ENST00000586260.1	chr19	19897370:19897663:19916839:19916935:19917750:19917877,19909597:19910259:19916839:19916935:19917750:19917877,19906021:19906469:19916839:19916935:19917750:19917877,19903269:19903293:19916839:19916935:19917750:19917877,	19916840	19916935	19916883	19916883	Frame_Shift_Del	T	-	p.P62fs
STAD	TCGA-BR-4280-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167473	Frame_Shift_Del	A	-	p.L72fs
STAD	TCGA-BR-4280-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206848	89206848	Frame_Shift_Del	A	-	p.D75fs
STAD	TCGA-BR-4280-01	IL37	ENST00000353225.3	chr2	113670547:113670671:113671368:113671431:113675211:113675354,	113671369	113671431	113671381	113671382	Frame_Shift_Ins	-	C	p.S32fs
STAD	TCGA-BR-4280-01	TBCA	ENST00000306388.6	chr5	76989090:76989177:77004066:77004172:77072028:77072085,	77004067	77004172	77004142	77004142	Frame_Shift_Del	T	-	p.E29fs
STAD	TCGA-BR-4280-01	PTGIS	ENST00000478971.1,ENST00000244043.4	chr20	48124520:48124601:48127564:48127716:48129616:48129798,	48127565	48127716	48127617	48127617	Frame_Shift_Del	C	-	p.A436fs
STAD	TCGA-BR-4280-01	MYO5B	ENST00000285039.7	chr18	47479629:47479713:47480682:47480805:47488635:47488776,	47480683	47480805	47480799	47480800	Frame_Shift_Ins	-	G	p.K518fs
STAD	TCGA-BR-4280-01	ADH1A	ENST00000209668.2	chr4	100205555:100205775:100205872:100205960:100208006:100208145,	100205873	100205960	100205902	100205903	Frame_Shift_Ins	-	T	p.N106fs
STAD	TCGA-BR-4280-01	TMCO3	ENST00000434316.2	chr13	114193671:114193822:114201614:114201694:114202617:114202704,	114201615	114201694	114201627	114201628	Frame_Shift_Ins	-	C	p.F568fs
STAD	TCGA-BR-4280-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194165453:194165515:194167655:194167844:194168580:194168738,	194167656	194167844	194167726	194167727	Frame_Shift_Ins	-	T	p.I476fs
STAD	TCGA-BR-4280-01	TMSB15B	ENST00000567181.1	chrX	103217247:103217296:103219078:103219195:103227463:103229570,	103219079	103219195	103219168	103219169	Frame_Shift_Ins	-	A	p.E25fs
STAD	TCGA-BR-4280-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143009	47143010	Frame_Shift_Ins	-	A	p.T1652fs
STAD	TCGA-BR-4280-01	ABCC9	ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	22065805:22066000:22068601:22068844:22069870:22070037,	22068602	22068844	22068696	22068696	Frame_Shift_Del	T	-	p.K241fs
STAD	TCGA-BR-4280-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405953	157405954	Frame_Shift_Ins	-	G	p.P732fs
STAD	TCGA-HF-7132-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660980	3660980	Frame_Shift_Del	G	-	p.H227fs
STAD	TCGA-HF-7132-01	LRP1B	ENST00000389484.3	chr2	141747100:141747226:141751563:141751704:141762903:141763026,	141751564	141751704	141751637	141751638	Frame_Shift_Del	AC	-	p.857_858del
STAD	TCGA-HF-7132-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459489	100459490	Frame_Shift_Ins	-	G	p.K556fs
STAD	TCGA-HF-7132-01	ARHGAP11A	ENST00000563864.1	chr15	32921795:32921963:32925263:32925309:32926133:32926242,	32925264	32925309	32925295	32925296	Frame_Shift_Ins	-	A	p.G407fs
STAD	TCGA-HF-7132-01	ARHGAP11A	ENST00000565905.1,ENST00000543522.1,ENST00000567348.1,ENST00000361627.3	chr15	32921795:32921963:32925179:32925309:32926133:32926242,	32925180	32925309	32925295	32925296	Frame_Shift_Ins	-	A	p.G407fs
STAD	TCGA-HF-7132-01	HELQ	ENST00000508591.1,ENST00000295488.3	chr4	84367166:84367239:84367987:84368188:84369935:84370114,	84367988	84368188	84368060	84368060	Frame_Shift_Del	T	-	p.G441fs
STAD	TCGA-HF-7132-01	MBOAT2	ENST00000486484.1	chr2	9083315:9083393:9098625:9098771:9143668:9143787,	9098626	9098771	9098635	9098636	Frame_Shift_Ins	-	A	p.C71fs
STAD	TCGA-HF-7132-01	RALGAPA1	ENST00000553892.1,ENST00000554573.1,ENST00000554259.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000307138.6	chr14	36041765:36041924:36064839:36064995:36074791:36074915,	36064840	36064995	36064948	36064949	Frame_Shift_Ins	-	T	p.N1861fs
STAD	TCGA-HF-7132-01	CASP5	ENST00000456200.1	chr11	104874000:104874110:104877809:104878061:104893856:104893863,104874000:104874110:104877809:104878061:104879533:104879645,104872754:104872928:104877809:104878061:104893856:104893863,	104877810	104878061	104878041	104878042	Frame_Shift_Del	TT	-	p.81_81del
STAD	TCGA-HF-7132-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000473931.1,ENST00000375695.2	chrX	51641706:51641739:51643277:51643392:51644648:51645034,	51643278	51643392	51643310	51643311	Frame_Shift_Ins	-	C	p.N682fs
STAD	TCGA-HF-7132-01	HNRNPUL1	ENST00000595806.1,ENST00000378215.4,ENST00000352456.3	chr19	41810147:41810166:41811550:41811772:41812353:41812830,	41811551	41811772	41811722	41811722	Frame_Shift_Del	C	-	p.P801fs
STAD	TCGA-HF-7132-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000595018.1,ENST00000263367.3,ENST00000593587.1	chr19	41810147:41810166:41811580:41811772:41812353:41812830,	41811581	41811772	41811722	41811722	Frame_Shift_Del	C	-	p.P801fs
STAD	TCGA-HF-7132-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108338	102108338	Frame_Shift_Del	T	-	p.W159fs
STAD	TCGA-HF-7132-01	SORBS1	ENST00000371239.1,ENST00000353505.5,ENST00000361941.3,ENST00000347291.4,ENST00000393949.1,ENST00000371245.3,ENST00000607232.1,ENST00000371249.2,ENST00000371246.2,ENST00000277982.5,ENST00000371247.2,ENST00000354106.3,ENST00000371227.4,ENST00000306402.6,ENST00000371241.1	chr10	97074815:97074883:97078076:97078189:97081719:97081778,	97078077	97078189	97078077	97078078	Frame_Shift_Ins	-	A	p.G1271fs
STAD	TCGA-HF-7132-01	C8orf34	ENST00000518515.1	chr8	69621228:69621314:69633595:69633672:69688633:69688684,69621228:69621314:69633595:69633672:69699677:69699771,	69633596	69633672	69633596	69633597	Frame_Shift_Ins	-	T	p.D443fs
STAD	TCGA-HF-7132-01	M1AP	ENST00000464686.1,ENST00000409585.1,ENST00000290536.5,ENST00000536235.1	chr2	74787277:74787418:74789343:74789550:74802564:74802616,	74789344	74789550	74789519	74789520	Frame_Shift_Ins	-	C	p.E369fs
STAD	TCGA-HF-7132-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864269	129864270	Frame_Shift_Ins	-	TC	p.N505fs
STAD	TCGA-HF-7132-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228487582:228487846:228491375:228491639:228492003:228492045,	228491376	228491639	228491466	228491466	Frame_Shift_Del	C	-	p.A4610fs
STAD	TCGA-HF-7132-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182636	59182637	Frame_Shift_Del	CT	-	p.641_642del
STAD	TCGA-HF-7132-01	ACSL3	ENST00000392066.3	chr2	223752547:223752606:223773450:223773868:223781036:223781214,	223773451	223773868	223773616	223773616	Frame_Shift_Del	T	-	p.Y42fs
STAD	TCGA-HF-7132-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507493	74507493	Frame_Shift_Del	T	-	p.Q375fs
STAD	TCGA-HF-7132-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507493	74507493	Frame_Shift_Del	T	-	p.Q375fs
STAD	TCGA-HF-7132-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270149	66270150	Frame_Shift_Ins	-	C	p.L99fs
STAD	TCGA-HF-7132-01	FBXW8	ENST00000455858.2,ENST00000309909.5	chr12	117383168:117383333:117387422:117387511:117402501:117402659,	117387423	117387511	117387463	117387464	Frame_Shift_Del	AC	-	p.210_210del
STAD	TCGA-HF-7132-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000216487.7	chr14	93107582:93107674:93117926:93119420:93125505:93125814,	93117927	93119420	93118771	93118772	Frame_Shift_Ins	-	C	p.P459fs
STAD	TCGA-HF-7132-01	SLC7A4	ENST00000403586.1,ENST00000382932.2	chr22	21383624:21383733:21383999:21384640:21385119:21385263,	21384000	21384640	21384035	21384035	Frame_Shift_Del	C	-	p.A530fs
STAD	TCGA-HF-7132-01	PTGS1	ENST00000373698.5,ENST00000223423.4,ENST00000362012.2,ENST00000540753.1	chr9	125140711:125140852:125141053:125141197:125143649:125143831,	125141054	125141197	125141077	125141077	Frame_Shift_Del	C	-	p.S125fs
STAD	TCGA-HF-7132-01	ACTL6A	ENST00000450518.2,ENST00000468767.2,ENST00000429709.2,ENST00000494843.1,ENST00000392662.1,ENST00000487978.1	chr3	179287611:179287688:179287854:179288029:179291156:179291257,	179287855	179288029	179288016	179288016	Frame_Shift_Del	A	-	p.L88fs
STAD	TCGA-HF-7132-01	ZNF346	ENST00000503425.1	chr5	176468126:176468230:176471392:176471534:176477751:176477893,	176471393	176471534	176471424	176471425	Frame_Shift_Ins	-	C	p.C136fs
STAD	TCGA-HF-7132-01	ZNF346	ENST00000511834.1	chr5	176468778:176468871:176471389:176471534:176477751:176477893,176468778:176468871:176471389:176471534:176477703:176477937,	176471390	176471534	176471424	176471425	Frame_Shift_Ins	-	C	p.C136fs
STAD	TCGA-HF-7132-01	KDM1B	ENST00000388870.2,ENST00000297792.5,ENST00000397244.1	chr6	18163065:18163155:18166497:18166609:18171593:18171710,	18166498	18166609	18166532	18166532	Frame_Shift_Del	A	-	p.W113X
STAD	TCGA-HF-7132-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Frame_Shift_Del	A	-	p.L474X
STAD	TCGA-HF-7132-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Frame_Shift_Del	A	-	p.L474X
STAD	TCGA-HF-7132-01	BUB1B	ENST00000287598.6,ENST00000412359.3	chr15	40475924:40476084:40477365:40477580:40477751:40477843,	40477366	40477580	40477506	40477506	Frame_Shift_Del	C	-	p.A297fs
STAD	TCGA-HF-7132-01	EPHA5	ENST00000511294.1,ENST00000273854.3,ENST00000354839.4	chr4	66286158:66286283:66356094:66356430:66361105:66361261,	66356095	66356430	66356423	66356423	Frame_Shift_Del	G	-	p.S359fs
STAD	TCGA-HF-7132-01	TTLL7	ENST00000485638.1,ENST00000477524.1,ENST00000480174.1,ENST00000260505.8	chr1	84403534:84403699:84408145:84408362:84412806:84412965,	84408146	84408362	84408217	84408217	Frame_Shift_Del	T	-	p.I218fs
STAD	TCGA-HF-7132-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.R587fs
STAD	TCGA-HF-7132-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85752565:85752758:85758081:85758243:85762306:85762416,	85758082	85758243	85758174	85758175	Frame_Shift_Ins	-	A	p.D162_L163delinsX
STAD	TCGA-HF-7132-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5760663:5760803:5764954:5765069:5769062:5769227,	5764955	5765069	5765046	5765046	Frame_Shift_Del	T	-	p.W472fs
STAD	TCGA-HF-7132-01	MS4A7	ENST00000534016.1,ENST00000358246.1,ENST00000530614.1,ENST00000528808.1	chr11	60150601:60150761:60154189:60154246:60156862:60157069,	60154190	60154246	60154225	60154225	Frame_Shift_Del	A	-	p.G106fs
STAD	TCGA-HF-7132-01	LSM14A	ENST00000540746.2,ENST00000588582.2,ENST00000544216.3,ENST00000586157.1,ENST00000433627.5	chr19	34706500:34706566:34710295:34710478:34710610:34710782,	34710296	34710478	34710341	34710341	Frame_Shift_Del	G	-	p.R276fs
STAD	TCGA-HF-7132-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-HF-7132-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-HF-7132-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S153fs
STAD	TCGA-HF-7132-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881731	43881731	Frame_Shift_Del	G	-	p.N103fs
STAD	TCGA-HF-7132-01	LAMB3	ENST00000415782.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209811878:209811993:209823308:209823463:209824261:209824321,	209823309	209823463	209823320	209823320	Frame_Shift_Del	G	-	p.Q58fs
STAD	TCGA-HF-7132-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108749	14108750	Frame_Shift_Del	AA	-	p.1486_1487del
STAD	TCGA-HF-7132-01	CCDC102B	ENST00000360242.5,ENST00000358653.5	chr18	66465316:66465418:66503985:66504606:66505942:66506163,	66503986	66504606	66504103	66504103	Frame_Shift_Del	C	-	p.S34fs
STAD	TCGA-HF-7132-01	NPC1	ENST00000412552.2,ENST00000591075.1,ENST00000591051.1,ENST00000269228.5	chr18	21116705:21116840:21118505:21118635:21119318:21119434,	21118506	21118635	21118569	21118569	Frame_Shift_Del	C	-	p.G993fs
STAD	TCGA-HF-7132-01	NBN	ENST00000265433.3,ENST00000409330.1	chr8	90992961:90993121:90993602:90993751:90994180:90994230,90992961:90993121:90993602:90993751:90994949:90995083,	90993603	90993751	90993676	90993676	Frame_Shift_Del	T	-	p.M83fs
STAD	TCGA-HF-7132-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154054	19154054	Frame_Shift_Del	T	-	p.M251fs
STAD	TCGA-HF-7132-01	SKIL	ENST00000259119.4,ENST00000426052.2,ENST00000458537.3	chr3	170099063:170099129:170102320:170102553:170108010:170108252,	170102321	170102553	170102466	170102467	Frame_Shift_Ins	-	A	p.Q448fs
STAD	TCGA-HF-7132-01	TRIP4	ENST00000557834.1	chr15	64680060:64680247:64686205:64686314:64687596:64687730,	64686206	64686314	64686218	64686218	Frame_Shift_Del	A	-	p.G58fs
STAD	TCGA-HF-7132-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41807440:41807609:41808569:41808854:41809876:41809961,	41808570	41808854	41808818	41808818	Frame_Shift_Del	G	-	p.R645fs
STAD	TCGA-HF-7132-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413187	43413187	Frame_Shift_Del	G	-	p.L340fs
STAD	TCGA-HF-7132-01	FGFR4	ENST00000292408.4,ENST00000502906.1	chr5	176519646:176519785:176520138:176520332:176520406:176520502,	176520139	176520332	176520278	176520278	Frame_Shift_Del	C	-	p.H399fs
STAD	TCGA-BR-8680-01	PPP4R4	ENST00000304338.3	chr14	94703901:94704023:94707009:94707132:94708124:94708294,	94707010	94707132	94707088	94707091	Frame_Shift_Del	TTTC	-	p.311_312del
STAD	TCGA-BR-8680-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660178	77660179	Frame_Shift_Ins	-	T	p.G284fs
STAD	TCGA-BR-8680-01	C6orf62	ENST00000378119.4,ENST00000540769.1,ENST00000378102.3	chr6	24709004:24709139:24714545:24714668:24716375:24716549,	24714546	24714668	24714604	24714605	Frame_Shift_Ins	-	T	p.I124fs
STAD	TCGA-BR-8680-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450183	85450184	Frame_Shift_Ins	-	A	p.E538fs
STAD	TCGA-BR-8081-01	WDR70	ENST00000511906.1,ENST00000510699.1,ENST00000265107.4	chr5	37697756:37697856:37701159:37701244:37703050:37703106,	37701160	37701244	37701207	37701208	Frame_Shift_Ins	-	T	p.L414fs
STAD	TCGA-BR-8081-01	TRAPPC10	ENST00000486746.1,ENST00000459741.1,ENST00000291574.4,ENST00000465905.1,ENST00000422875.1,ENST00000485621.1	chr21	45511803:45511930:45513943:45514114:45518237:45518305,	45513944	45514114	45514004	45514004	Frame_Shift_Del	C	-	p.P1019fs
STAD	TCGA-BR-8081-01	KIAA0232	ENST00000307659.5,ENST00000425103.1	chr4	6825911:6826411:6843793:6843931:6858890:6858957,	6843794	6843931	6843886	6843887	Frame_Shift_Ins	-	A	p.M108fs
STAD	TCGA-BR-8081-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627689	137627690	Frame_Shift_Ins	-	T	p.K244fs
STAD	TCGA-BR-8081-01	GALNT12	ENST00000375011.3	chr9	101597530:101597648:101599253:101599430:101602283:101602415,	101599254	101599430	101599309	101599309	Frame_Shift_Del	T	-	p.V364fs
STAD	TCGA-BR-8081-01	IL16	ENST00000560115.1,ENST00000394660.2,ENST00000559388.1,ENST00000558332.1	chr15	81595889:81595991:81598248:81598507:81598763:81598867,	81598249	81598507	81598461	81598462	Frame_Shift_Del	CT	-	p.1211_1211del
STAD	TCGA-BR-8081-01	APPL2	ENST00000547809.1,ENST00000549974.1,ENST00000549573.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000550648.1,ENST00000258530.3	chr12	105597480:105597563:105600838:105600985:105601748:105601767,	105600839	105600985	105600965	105600966	Frame_Shift_Del	TT	-	p.171_172del
STAD	TCGA-BR-8081-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186086125:186086247:186086590:186086755:186088322:186088430,	186086591	186086755	186086701	186086701	Frame_Shift_Del	A	-	p.T3931fs
STAD	TCGA-BR-8081-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77413116	77413116	Frame_Shift_Del	T	-	p.R387fs
STAD	TCGA-BR-8081-01	TFRC	ENST00000392396.3,ENST00000540528.1,ENST00000420415.1,ENST00000475593.1,ENST00000535031.1,ENST00000360110.4	chr3	195780379:195780429:195781950:195782172:195785154:195785236,	195781951	195782172	195782167	195782168	Frame_Shift_Del	TG	-	p.561_562del
STAD	TCGA-BR-8081-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016540	1016543	Frame_Shift_Del	GAAG	-	p.2087_2088del
STAD	TCGA-BR-8081-01	MUC5B	ENST00000525715.1,ENST00000529681.1,ENST00000447027.1	chr11	1250919:1251037:1251234:1251373:1251719:1251830,	1251235	1251373	1251244	1251245	Frame_Shift_Ins	-	G	p.S410fs
STAD	TCGA-BR-8081-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562345	32562346	Frame_Shift_Ins	-	A	p.E824fs
STAD	TCGA-BR-8081-01	MSLN	ENST00000563651.1,ENST00000563941.1,ENST00000566549.1,ENST00000569566.1,ENST00000545450.2,ENST00000382862.3	chr16	814022:814143:814646:814726:814906:815036,	814647	814726	814677	814677	Frame_Shift_Del	C	-	p.E110fs
STAD	TCGA-BR-8081-01	PLK4	ENST00000270861.5,ENST00000514379.1,ENST00000515069.1,ENST00000513090.1,ENST00000507249.1	chr4	128813519:128813669:128814439:128814573:128814667:128814759,	128814440	128814573	128814507	128814507	Frame_Shift_Del	A	-	p.L752X
STAD	TCGA-BR-8081-01	EDNRA	ENST00000510697.1	chr4	148406985:148407253:148441002:148441130:148453657:148453811,148402083:148402528:148441002:148441130:148453657:148453811,148406985:148407253:148441002:148441130:148457028:148457181,	148441003	148441130	148441069	148441069	Frame_Shift_Del	T	-	p.P162fs
STAD	TCGA-BR-8081-01	HSPG2	ENST00000430507.1,ENST00000374695.3	chr1	22175385:22175524:22176533:22176685:22176855:22176991,	22176534	22176685	22176669	22176669	Frame_Shift_Del	G	-	p.T2438fs
STAD	TCGA-BR-8081-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158924562	158924563	Frame_Shift_Ins	-	C	p.K1289fs
STAD	TCGA-BR-8081-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328258	40328259	Frame_Shift_Ins	-	C	p.S215fs
STAD	TCGA-BR-8081-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.A201fs
STAD	TCGA-BR-8081-01	UBAC2	ENST00000376440.2	chr13	99896768:99896878:99966350:99966474:99970275:99970323,99890680:99890808:99966350:99966474:99970275:99970323,	99966351	99966474	99966382	99966382	Frame_Shift_Del	T	-	p.P140fs
STAD	TCGA-BR-8081-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72400477:72400649:72409128:72409220:72409874:72409948,	72409129	72409220	72409181	72409181	Frame_Shift_Del	C	-	p.S178fs
STAD	TCGA-BR-8081-01	PSMD12	ENST00000578015.1,ENST00000584289.1	chr17	65353418:65353547:65353634:65353694:65362527:65362635,	65353635	65353694	65353654	65353655	Frame_Shift_Del	AG	-	p.50_50del
STAD	TCGA-BR-8081-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24905688:24905856:24910350:24910464:24911360:24911414,	24910351	24910464	24910452	24910453	Frame_Shift_Del	TC	-	p.94_94del
STAD	TCGA-BR-8081-01	CHEK2	ENST00000382580.2,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000404276.1	chr22	29091114:29091230:29091697:29091861:29095825:29095925,29091114:29091230:29091697:29091861:29092888:29092975,	29091698	29091861	29091778	29091778	Frame_Shift_Del	A	-	p.E437fs
STAD	TCGA-CG-5726-01	DNAH9	ENST00000262442.4,ENST00000454412.2	chr17	11772450:11772570:11774914:11775103:11778265:11778501,	11774915	11775103	11775064	11775064	Frame_Shift_Del	C	-	p.L3401fs
STAD	TCGA-CG-5726-01	PSMA3	ENST00000557508.1	chr14	58714506:58714550:58718836:58718960:58724462:58724563,58711621:58711659:58718836:58718960:58724462:58724564,	58718837	58718960	58718839	58718839	Frame_Shift_Del	C	-	p.T36fs
STAD	TCGA-CG-5726-01	ASPH	ENST00000379454.4,ENST00000518068.1,ENST00000518306.1,ENST00000356457.5,ENST00000541428.1	chr8	62566126:62566219:62593526:62593595:62596597:62596747,	62593527	62593595	62593555	62593555	Frame_Shift_Del	A	-	p.D114fs
STAD	TCGA-CG-5726-01	LMBRD1	ENST00000472827.1	chr6	70490385:70490446:70500187:70500364:70506704:70506777,	70500188	70500364	70500356	70500357	Frame_Shift_Ins	-	A	p.L26fs
STAD	TCGA-CG-5726-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108985249	108985249	Frame_Shift_Del	G	-	p.T404fs
STAD	TCGA-CG-5726-01	SLC29A4	ENST00000396872.3,ENST00000297195.4	chr7	5331360:5331452:5334490:5334565:5336566:5336829,	5334491	5334565	5334518	5334519	Frame_Shift_Ins	-	G	p.T191fs
STAD	TCGA-CG-5726-01	SLC29A4	ENST00000406453.3	chr7	5331360:5331452:5334495:5334565:5336566:5336829,	5334496	5334565	5334518	5334519	Frame_Shift_Ins	-	G	p.T191fs
STAD	TCGA-CG-5726-01	DCUN1D5	ENST00000529281.1,ENST00000260247.5,ENST00000531571.1,ENST00000527260.1,ENST00000525420.1	chr11	102937216:102937296:102953476:102953568:102953984:102954055,	102953477	102953568	102953515	102953515	Frame_Shift_Del	A	-	p.T102fs
STAD	TCGA-CG-5726-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Frame_Shift_Del	A	-	p.L208fs
STAD	TCGA-CG-5726-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1144fs
STAD	TCGA-CG-5726-01	CCDC78	ENST00000463539.1,ENST00000466708.1,ENST00000293889.6,ENST00000482152.1,ENST00000485091.1,ENST00000345165.4	chr16	773856:773936:774105:774205:774321:774509,	774106	774205	774189	774189	Frame_Shift_Del	G	-	p.Q324fs
STAD	TCGA-CG-5726-01	ZCCHC4	ENST00000505412.1,ENST00000302874.4	chr4	25351113:25351264:25353210:25353311:25363480:25363602,	25353211	25353311	25353254	25353254	Frame_Shift_Del	T	-	p.Y318fs
STAD	TCGA-CG-5726-01	NFKB2	ENST00000189444.6,ENST00000428099.1,ENST00000336486.5,ENST00000467116.1,ENST00000369966.3	chr10	104157968:104158054:104158141:104158280:104158495:104158621,	104158142	104158280	104158163	104158163	Frame_Shift_Del	C	-	p.T291fs
STAD	TCGA-CG-5726-01	WDR72	ENST00000360509.5	chr15	54014998:54015105:54025193:54025358:54051829:54051859,	54025194	54025358	54025295	54025295	Frame_Shift_Del	G	-	p.H18fs
STAD	TCGA-CG-5726-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61835708	61835708	Frame_Shift_Del	G	-	p.P1644fs
STAD	TCGA-CG-5726-01	SLAIN1	ENST00000358679.3,ENST00000351546.3,ENST00000474663.1,ENST00000488699.1,ENST00000466548.1,ENST00000441784.1,ENST00000442759.1,ENST00000418532.1,ENST00000267219.8	chr13	78318417:78318567:78320648:78320990:78327337:78327376,	78320649	78320990	78320722	78320722	Frame_Shift_Del	A	-	p.G330fs
STAD	TCGA-CG-5726-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104628	26104629	Frame_Shift_Ins	-	G	p.P430fs
STAD	TCGA-CG-5726-01	TPCN1	ENST00000552077.1,ENST00000547275.1,ENST00000550873.1,ENST00000335509.6,ENST00000541517.1,ENST00000552985.1,ENST00000550785.1	chr12	113664532:113664769:113698172:113698297:113703984:113704002,	113698173	113698297	113698206	113698206	Frame_Shift_Del	C	-	p.A121fs
STAD	TCGA-CG-5726-01	CCDC62	ENST00000392440.2,ENST00000537566.1,ENST00000253079.6	chr12	123297816:123297966:123307912:123308006:123310968:123311164,	123307913	123308006	123307941	123307941	Frame_Shift_Del	A	-	p.Q677fs
STAD	TCGA-CG-5726-01	PLK3	ENST00000465443.1,ENST00000372201.4	chr1	45268626:45268825:45268939:45269063:45269271:45269293,	45268940	45269063	45268997	45268997	Frame_Shift_Del	C	-	p.T335fs
STAD	TCGA-CG-5726-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120205	12120206	Frame_Shift_Ins	-	A	p.L59fs
STAD	TCGA-CG-5726-01	CTNND2	ENST00000359640.2,ENST00000511377.1,ENST00000304623.8	chr5	11364968:11365002:11384776:11385341:11397142:11397315,	11384777	11385341	11384949	11384949	Frame_Shift_Del	G	-	p.T336fs
STAD	TCGA-CG-5726-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409X
STAD	TCGA-CG-5726-01	RUNX1T1	ENST00000521553.1,ENST00000518844.1,ENST00000517792.1,ENST00000265814.3,ENST00000519847.1,ENST00000422361.2,ENST00000436581.2,ENST00000518992.1,ENST00000521054.1,ENST00000520724.1,ENST00000396218.1,ENST00000523290.1,ENST00000360348.2,ENST00000523629.1	chr8	93023315:93023319:93026806:93027048:93029453:93029591,	93026807	93027048	93027002	93027002	Frame_Shift_Del	G	-	p.S151fs
STAD	TCGA-CG-5726-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87688969:87689129:87690921:87691136:87691253:87691352,	87690922	87691136	87691032	87691032	Frame_Shift_Del	A	-	p.V1538fs
STAD	TCGA-CG-5726-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485090	35485090	Frame_Shift_Del	T	-	p.M98fs
STAD	TCGA-CG-5726-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2,ENST00000430789.1	chr2	100288999:100289051:100343538:100343590:100360565:100360602,	100343539	100343590	100343570	100343571	Frame_Shift_Ins	-	TG	p.E379fs
STAD	TCGA-CG-5726-01	NKIRAS2	ENST00000491638.1	chr17	40173581:40173689:40174393:40174658:40175671:40175859,	40174394	40174658	40174474	40174474	Frame_Shift_Del	G	-	p.R51fs
STAD	TCGA-CG-5726-01	NKIRAS2	ENST00000393880.1,ENST00000393881.3,ENST00000393885.4,ENST00000307641.5	chr17	40173581:40173689:40174416:40174658:40175671:40175859,	40174417	40174658	40174474	40174474	Frame_Shift_Del	G	-	p.R51fs
STAD	TCGA-CG-5726-01	NKIRAS2	ENST00000449471.4	chr17	40173581:40173689:40174416:40174490:40175671:40175859,	40174417	40174490	40174474	40174474	Frame_Shift_Del	G	-	p.R51fs
STAD	TCGA-CG-5726-01	NAMPT	ENST00000491027.1,ENST00000354289.4,ENST00000222553.3	chr7	105903837:105904063:105908909:105909046:105909599:105909651,	105908910	105909046	105908966	105908966	Frame_Shift_Del	T	-	p.Y230fs
STAD	TCGA-CG-5726-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48883070:48883436:48883900:48884028:48885416:48885624,	48883901	48884028	48883979	48883979	Frame_Shift_Del	A	-	p.P626fs
STAD	TCGA-CG-5726-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760502	93760502	Frame_Shift_Del	A	-	p.R289fs
STAD	TCGA-CG-5726-01	ZNF827	ENST00000379448.4,ENST00000508784.1,ENST00000513320.1	chr4	146696940:146697112:146700525:146700663:146744573:146744677,	146700526	146700663	146700596	146700596	Frame_Shift_Del	A	-	p.P818fs
STAD	TCGA-CG-5726-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242815	141242815	Frame_Shift_Del	G	-	p.K1028fs
STAD	TCGA-CG-5726-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5385192:5385441:5391449:5391725:5396546:5396907,	5391450	5391725	5391519	5391519	Frame_Shift_Del	A	-	p.C1801fs
STAD	TCGA-CG-5726-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71235557	71235558	Frame_Shift_Ins	-	T	p.V924fs
STAD	TCGA-CG-5726-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71235557	71235558	Frame_Shift_Ins	-	T	p.V924fs
STAD	TCGA-CG-5726-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805497	125805498	Frame_Shift_Ins	-	C	p.K78fs
STAD	TCGA-CG-5726-01	ZNF217	ENST00000371471.2,ENST00000302342.3	chr20	52185358:52185803:52188259:52188392:52192265:52192566,	52188260	52188392	52188288	52188288	Frame_Shift_Del	T	-	p.T1048fs
STAD	TCGA-CG-5726-01	STK10	ENST00000176763.5	chr5	171509964:171510088:171517235:171517366:171520415:171520581,	171517236	171517366	171517344	171517345	Frame_Shift_Ins	-	T	p.T526fs
STAD	TCGA-CG-5726-01	DNAH12	ENST00000495027.1,ENST00000311202.6,ENST00000351747.2,ENST00000389536.4	chr3	57509529:57509611:57528427:57528630:57529923:57530068,	57528428	57528630	57528532	57528532	Frame_Shift_Del	G	-	p.I23fs
STAD	TCGA-CG-5726-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769342	176769342	Frame_Shift_Del	T	-	p.N126fs
STAD	TCGA-CG-5726-01	STK25	ENST00000461760.1,ENST00000450497.1,ENST00000487962.1,ENST00000405883.3,ENST00000535007.1,ENST00000316586.4,ENST00000405585.1,ENST00000401869.1,ENST00000423004.1,ENST00000543554.1,ENST00000403346.3,ENST00000495143.1	chr2	242438157:242438199:242438403:242438589:242438671:242438735,	242438404	242438589	242438541	242438541	Frame_Shift_Del	C	-	p.E212fs
STAD	TCGA-CG-5726-01	CLVS2	ENST00000368438.1,ENST00000275162.5	chr6	123369766:123369877:123376950:123377171:123384818:123385612,	123376951	123377171	123376954	123376954	Frame_Shift_Del	T	-	p.I226fs
STAD	TCGA-CG-5726-01	TRIM5	ENST00000380027.1	chr11	5700303:5700399:5700990:5701468:5706245:5706339,	5700991	5701468	5701141	5701141	Frame_Shift_Del	C	-	p.Q90fs
STAD	TCGA-CG-5726-01	MFN1	ENST00000357390.4,ENST00000263969.5,ENST00000471841.1,ENST00000467174.2,ENST00000280653.7	chr3	179069687:179069823:179076627:179076790:179080145:179080198,	179076628	179076790	179076773	179076774	Frame_Shift_Ins	-	A	p.E132fs
STAD	TCGA-CG-5726-01	ATP2B2	ENST00000383800.4,ENST00000397077.1,ENST00000452124.1,ENST00000480680.2,ENST00000360273.2,ENST00000460129.1,ENST00000352432.4,ENST00000343816.4	chr3	10442636:10442762:10443774:10444032:10452301:10452359,	10443775	10444032	10443967	10443967	Frame_Shift_Del	C	-	p.A155fs
STAD	TCGA-CG-5726-01	C7orf50	ENST00000397100.2,ENST00000357429.6,ENST00000491163.1,ENST00000397098.3	chr7	1040105:1040187:1049585:1049779:1166892:1167022,	1049586	1049779	1049694	1049694	Frame_Shift_Del	T	-	p.K72fs
STAD	TCGA-CG-5726-01	CPED1	ENST00000310396.5	chr7	120907268:120907356:120911337:120911484:120935493:120935652,	120911338	120911484	120911388	120911388	Frame_Shift_Del	A	-	p.A924fs
STAD	TCGA-CG-5726-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32818096:32818294:32818720:32818926:32819885:32820011,	32818721	32818926	32818901	32818902	Frame_Shift_Del	CT	-	p.350_351del
STAD	TCGA-CG-5726-01	ZNF213	ENST00000574575.1	chr16	3187650:3187680:3188418:3188542:3188745:3188819,3187650:3187680:3188418:3188542:3188975:3189099,3187650:3187680:3188418:3188542:3190689:3191356,	3188419	3188542	3188482	3188482	Frame_Shift_Del	C	-	p.P154fs
STAD	TCGA-CG-5726-01	ZNF213	ENST00000576863.1	chr16	3187650:3187680:3188354:3188542:3188745:3188819,	3188355	3188542	3188482	3188482	Frame_Shift_Del	C	-	p.P154fs
STAD	TCGA-CG-5726-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000350210.2	chr1	155218195:155218264:155220066:155220612:155220885:155220955,	155220067	155220612	155220390	155220390	Frame_Shift_Del	G	-	p.P396fs
STAD	TCGA-CG-5726-01	FAM189B	ENST00000368366.1	chr1	155218195:155218264:155220066:155220720:155220885:155220955,	155220067	155220720	155220390	155220390	Frame_Shift_Del	G	-	p.P396fs
STAD	TCGA-CG-5726-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103666	47103666	Frame_Shift_Del	T	-	p.R2094fs
STAD	TCGA-CG-5726-01	SLC39A9	ENST00000557046.1,ENST00000336643.5,ENST00000556605.1,ENST00000555840.1	chr14	69866086:69866182:69890810:69890919:69908785:69908983,	69890811	69890919	69890833	69890833	Frame_Shift_Del	T	-	p.V40fs
STAD	TCGA-CG-5726-01	SPINK5	ENST00000359874.3	chr5	147504327:147504400:147505086:147505176:147505285:147505413,	147505087	147505176	147505129	147505129	Frame_Shift_Del	T	-	p.K927fs
STAD	TCGA-CG-5726-01	SQSTM1	ENST00000389805.4,ENST00000510187.1,ENST00000402874.3,ENST00000464493.1,ENST00000508284.1,ENST00000514093.1,ENST00000422245.1,ENST00000376929.3,ENST00000360718.5	chr5	179250025:179250053:179250857:179251087:179251181:179251237,	179250858	179251087	179250925	179250925	Frame_Shift_Del	C	-	p.H123fs
STAD	TCGA-CG-5726-01	EIF5A2	ENST00000474096.1,ENST00000487522.1	chr3	170624777:170624882:170625430:170625630:170626331:170626387,	170625431	170625630	170625513	170625513	Frame_Shift_Del	T	-	p.N28fs
STAD	TCGA-CG-5726-01	EIF5A2	ENST00000474417.1	chr3	170624777:170624882:170625430:170625588:170626331:170626393,	170625431	170625588	170625513	170625513	Frame_Shift_Del	T	-	p.N28fs
STAD	TCGA-CG-5726-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729846	24729847	Frame_Shift_Ins	-	C	p.G189fs
STAD	TCGA-CG-5726-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152319553	152319553	Frame_Shift_Del	A	-	p.R1173fs
STAD	TCGA-CG-5726-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34445168	34445168	Frame_Shift_Del	T	-	p.Q88fs
STAD	TCGA-CG-5726-01	AFF4	ENST00000378595.3,ENST00000265343.5	chr5	132228721:132228810:132232014:132232932:132233921:132234057,	132232015	132232932	132232627	132232627	Frame_Shift_Del	T	-	p.Q566fs
STAD	TCGA-CG-5726-01	BCL9L	ENST00000526143.1	chr11	118778191:118778311:118778978:118779364:118795946:118796317,	118778979	118779364	118779296	118779296	Frame_Shift_Del	G	-	p.P32fs
STAD	TCGA-CG-5726-01	ZNF341	ENST00000342427.2,ENST00000375200.1,ENST00000483118.1	chr20	32332908:32333105:32336728:32336878:32340977:32341229,	32336729	32336878	32336863	32336863	Frame_Shift_Del	C	-	p.G158fs
STAD	TCGA-CG-5726-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050026	44050026	Frame_Shift_Del	C	-	p.A346fs
STAD	TCGA-CG-5726-01	RCOR2	ENST00000301459.4	chr11	63680147:63680205:63680341:63680419:63681425:63681641,	63680342	63680419	63680346	63680346	Frame_Shift_Del	G	-	p.P322fs
STAD	TCGA-CG-5726-01	KIF5C	ENST00000464066.1,ENST00000414838.2,ENST00000435030.1,ENST00000397413.1,ENST00000482151.1	chr2	149857235:149857296:149861906:149861978:149864476:149864581,	149861907	149861978	149861973	149861973	Frame_Shift_Del	A	-	p.V813fs
STAD	TCGA-CG-5726-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000405201.1,ENST00000458234.1	chr12	124839023:124839128:124839382:124839485:124839977:124840117,	124839383	124839485	124839388	124839388	Frame_Shift_Del	T	-	p.K1160fs
STAD	TCGA-CG-5726-01	PARK7	ENST00000493373.1,ENST00000377488.1,ENST00000377491.1,ENST00000338639.5,ENST00000465354.1,ENST00000493678.1,ENST00000497113.1	chr1	8022826:8022935:8025383:8025485:8030953:8031023,8022826:8022935:8025383:8025485:8029404:8029464,	8025384	8025485	8025475	8025476	Frame_Shift_Ins	-	A	p.A61fs
STAD	TCGA-CG-5726-01	NUMB	ENST00000554315.1,ENST00000557597.1,ENST00000554521.2,ENST00000359560.3,ENST00000555738.2,ENST00000535282.1,ENST00000554546.1	chr14	73763968:73763993:73789837:73789912:73822333:73822474,	73789838	73789912	73789849	73789849	Frame_Shift_Del	T	-	p.R64fs
STAD	TCGA-CG-5726-01	NUMB	ENST00000556112.1	chr14	73763968:73763993:73789837:73789937:73822333:73822474,	73789838	73789937	73789849	73789849	Frame_Shift_Del	T	-	p.R64fs
STAD	TCGA-CG-5726-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000392381.3,ENST00000447466.1,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4	chr3	196846280:196846401:196857397:196857542:196863412:196863549,	196857398	196857542	196857450	196857450	Frame_Shift_Del	T	-	p.P405fs
STAD	TCGA-CG-5726-01	PARP2	ENST00000250416.5,ENST00000539930.1,ENST00000530598.2,ENST00000527915.1,ENST00000429687.3	chr14	20824465:20824593:20824748:20824848:20825209:20825308,	20824749	20824848	20824816	20824817	Frame_Shift_Ins	-	C	p.A446fs
STAD	TCGA-CG-5726-01	AOX1	ENST00000485965.1,ENST00000374700.2	chr2	201476106:201476216:201477331:201477516:201478526:201478689,	201477332	201477516	201477410	201477410	Frame_Shift_Del	T	-	p.V447fs
STAD	TCGA-CG-5726-01	SASH3	ENST00000356892.3	chrX	128924915:128925057:128926303:128926452:128926602:128926812,	128926304	128926452	128926361	128926361	Frame_Shift_Del	C	-	p.A167fs
STAD	TCGA-CG-5726-01	FECH	ENST00000585494.1,ENST00000262093.5,ENST00000382873.3,ENST00000591977.1	chr18	55218546:55218606:55221491:55221656:55222076:55222184,	55221492	55221656	55221591	55221591	Frame_Shift_Del	C	-	p.R333fs
STAD	TCGA-CG-5726-01	AP1B1	ENST00000415447.1,ENST00000317368.7,ENST00000356015.2,ENST00000432560.2,ENST00000405198.1,ENST00000357586.2,ENST00000402502.1	chr22	29727437:29727522:29727775:29727905:29730253:29730339,	29727776	29727905	29727880	29727880	Frame_Shift_Del	G	-	p.L779fs
STAD	TCGA-CG-5726-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245999	26245999	Frame_Shift_Del	A	-	p.G12fs
STAD	TCGA-CG-5726-01	PIGT	ENST00000535404.1,ENST00000372689.5	chr20	44044822:44044983:44045156:44045334:44047934:44048035,44044822:44044983:44045156:44045334:44047491:44047619,	44045157	44045334	44045332	44045335	Frame_Shift_Del	TGAG	-	p.121_122del
STAD	TCGA-CG-5726-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
STAD	TCGA-HU-A4GX-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729453	19729453	Frame_Shift_Del	T	-	p.S279fs
STAD	TCGA-HU-A4GX-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000524984.1,ENST00000531879.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000528173.1,ENST00000527911.1	chr11	46393977:46394060:46394166:46394227:46394320:46394393,	46394167	46394227	46394213	46394213	Frame_Shift_Del	G	-	p.C540fs
STAD	TCGA-HU-A4GX-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
STAD	TCGA-HU-A4GX-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
STAD	TCGA-HU-A4GX-01	OARD1	ENST00000480585.1,ENST00000244558.9,ENST00000373154.2	chr6	41036579:41036692:41037814:41037873:41038870:41038956,41035139:41035176:41037814:41037873:41038870:41038956,	41037815	41037873	41037820	41037821	Frame_Shift_Ins	-	AT	p.Y80fs
STAD	TCGA-HU-A4GX-01	FHL1	ENST00000434885.1,ENST00000394155.2,ENST00000370690.3,ENST00000539015.1,ENST00000370676.3,ENST00000370674.1,ENST00000452016.1,ENST00000543669.1,ENST00000345434.3,ENST00000535737.1,ENST00000370683.1,ENST00000458357.1,ENST00000394153.2,ENST00000420362.1,ENST00000456445.1,ENST00000449474.1	chrX	135288565:135288747:135289174:135289349:135289950:135290042,	135289175	135289349	135289288	135289289	Frame_Shift_Ins	-	A	p.N119fs
STAD	TCGA-HU-A4GX-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663533	103663534	Frame_Shift_Del	GA	-	p.343_343del
STAD	TCGA-HU-A4GX-01	CEP164	ENST00000533223.1,ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117261492:117261624:117261714:117261931:117262941:117263019,	117261715	117261931	117261750	117261751	Frame_Shift_Del	AA	-	p.704_704del
STAD	TCGA-HU-A4GX-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072396	197072396	Frame_Shift_Del	T	-	p.A1996fs
STAD	TCGA-HU-A4GX-01	WDR59	ENST00000536050.1,ENST00000262144.6	chr16	74972148:74972164:74976635:74976724:74982416:74982454,	74976636	74976724	74976691	74976691	Frame_Shift_Del	T	-	p.N160fs
STAD	TCGA-HU-A4GX-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232950	19232950	Frame_Shift_Del	A	-	p.S467X
STAD	TCGA-HU-A4GX-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
STAD	TCGA-HU-A4GX-01	ELMO1	ENST00000448602.1,ENST00000310758.4,ENST00000455879.1,ENST00000442504.1,ENST00000455119.1	chr7	37298785:37298955:37311436:37311487:37354453:37354526,	37311437	37311487	37311468	37311468	Frame_Shift_Del	T	-	p.N71fs
STAD	TCGA-HU-A4GX-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280135	114280135	Frame_Shift_Del	G	-	p.R3454fs
STAD	TCGA-HU-A4GX-01	SGK1	ENST00000528577.1,ENST00000477460.2,ENST00000367858.5,ENST00000367857.5,ENST00000237305.7,ENST00000413996.3,ENST00000475719.2	chr6	134491243:134491573:134491963:134492053:134492160:134492316,	134491964	134492053	134491976	134491976	Frame_Shift_Del	A	-	p.N468fs
STAD	TCGA-HU-A4GX-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1017323	1017324	Frame_Shift_Del	AT	-	p.1826_1827del
STAD	TCGA-HU-A4GX-01	DDC	ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000380984.4,ENST00000444733.1	chr7	50571690:50571757:50595834:50595978:50596905:50597040,	50595835	50595978	50595863	50595864	Frame_Shift_Del	TC	-	p.229_229del
STAD	TCGA-HU-A4GX-01	CCDC102B	ENST00000360242.5,ENST00000358653.5	chr18	66465316:66465418:66503985:66504606:66505942:66506163,	66503986	66504606	66504103	66504103	Frame_Shift_Del	C	-	p.S34fs
STAD	TCGA-HU-A4GX-01	RTEL1	ENST00000508582.2,ENST00000318100.4,ENST00000370018.3,ENST00000360203.5	chr20	62320407:62320485:62320854:62321001:62321102:62321218,	62320855	62321001	62320919	62320920	Frame_Shift_Ins	-	C	p.Y672fs
STAD	TCGA-HU-A4GX-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48883070:48883436:48883900:48884028:48885416:48885624,	48883901	48884028	48883978	48883979	Frame_Shift_Ins	-	A	p.P626fs
STAD	TCGA-HU-A4GX-01	REN	ENST00000367195.2,ENST00000272190.8	chr1	204123946:204124305:204124947:204125046:204125305:204125367,	204124948	204125046	204124957	204124958	Frame_Shift_Del	AT	-	p.350_351del
STAD	TCGA-HU-A4GX-01	ATXN2	ENST00000550889.1,ENST00000482777.1,ENST00000535949.1	chr12	111895017:111895163:111907911:111908044:111908361:111908364,	111907912	111908044	111907939	111907939	Frame_Shift_Del	C	-	p.A1097fs
STAD	TCGA-HU-A4GX-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124456635	124456636	Frame_Shift_Ins	-	A	p.S177fs
STAD	TCGA-HU-A4GX-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124456635	124456636	Frame_Shift_Ins	-	A	p.S177fs
STAD	TCGA-HU-A4GX-01	IREB2	ENST00000258886.8,ENST00000558525.1,ENST00000560440.1	chr15	78758612:78758831:78762873:78762943:78764082:78764143,	78762874	78762943	78762935	78762935	Frame_Shift_Del	T	-	p.Q230fs
STAD	TCGA-HU-A4GX-01	PI4KA	ENST00000477245.1,ENST00000572273.1,ENST00000414196.3,ENST00000255882.6	chr22	21084179:21084299:21087258:21087386:21088023:21088131,	21087259	21087386	21087260	21087261	Frame_Shift_Ins	-	G	p.P1429fs
STAD	TCGA-HU-A4GX-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669614	95669614	Frame_Shift_Del	G	-	p.P691fs
STAD	TCGA-HU-A4GX-01	WDR81	ENST00000309182.5	chr17	1619840:1619927:1631283:1631920:1633673:1633781,	1631284	1631920	1631634	1631634	Frame_Shift_Del	G	-	p.E1127fs
STAD	TCGA-HU-A4GX-01	PSD4	ENST00000245796.6	chr2	113942620:113942650:113942941:113943017:113943453:113943832,	113942942	113943017	113942944	113942945	Frame_Shift_Del	CT	-	p.392_392del
STAD	TCGA-HU-A4GX-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.Q164fs
STAD	TCGA-HU-A4GX-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77413116	77413116	Frame_Shift_Del	T	-	p.R387fs
STAD	TCGA-HU-A4GX-01	VANGL2	ENST00000368061.2	chr1	160385851:160385972:160388791:160389399:160390200:160390337,	160388792	160389399	160388802	160388802	Frame_Shift_Del	G	-	p.W68fs
STAD	TCGA-HU-A4GX-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214556665	214556666	Frame_Shift_Del	TC	-	p.845_845del
STAD	TCGA-HU-A4GX-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828435	72828435	Frame_Shift_Del	A	-	p.C2716fs
STAD	TCGA-HU-A4GX-01	ABR	ENST00000544583.2	chr17	1003876:1003975:1028517:1028702:1090093:1090616,	1028518	1028702	1028559	1028559	Frame_Shift_Del	C	-	p.D69fs
STAD	TCGA-HU-A4GX-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24854677:24854822:24856228:24856307:24859793:24859857,	24856229	24856307	24856292	24856292	Frame_Shift_Del	T	-	p.N655fs
STAD	TCGA-HU-A4GX-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173396	126173396	Frame_Shift_Del	C	-	p.K681fs
STAD	TCGA-HU-A4GX-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.W386fs
STAD	TCGA-HU-A4GX-01	SLC6A15	ENST00000450363.3,ENST00000266682.5	chr12	85279689:85279847:85285610:85286087:85306301:85306484,	85285611	85286087	85285889	85285889	Frame_Shift_Del	T	-	p.N4fs
STAD	TCGA-HU-A4GX-01	CDH13	ENST00000565636.1,ENST00000268613.10,ENST00000566620.1,ENST00000446376.2,ENST00000431540.3	chr16	82891966:82892078:83065614:83065823:83158989:83159106,	83065615	83065823	83065794	83065794	Frame_Shift_Del	G	-	p.V159fs
STAD	TCGA-HU-A4GX-01	STX12	ENST00000373943.4,ENST00000440806.2	chr1	28120043:28120143:28128188:28128326:28136756:28136800,	28128189	28128326	28128196	28128197	Frame_Shift_Del	AG	-	p.99_99del
STAD	TCGA-HU-A4GX-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729754	23729754	Frame_Shift_Del	C	-	p.V81fs
STAD	TCGA-HU-A4GX-01	SDCCAG8	ENST00000366541.3,ENST00000482234.1,ENST00000343783.6,ENST00000391846.1	chr1	243449684:243449699:243456392:243456521:243468014:243468079,	243456393	243456521	243456462	243456462	Frame_Shift_Del	T	-	p.P205fs
STAD	TCGA-HU-A4GX-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1,ENST00000527339.1	chr11	65313912:65314035:65314268:65314391:65314909:65315036,	65314269	65314391	65314282	65314283	Frame_Shift_Ins	-	C	p.G739fs
STAD	TCGA-HU-A4GX-01	OSMR	ENST00000274276.3	chr5	38921719:38921896:38923251:38923356:38924523:38924697,	38923252	38923356	38923329	38923329	Frame_Shift_Del	A	-	p.E614fs
STAD	TCGA-HU-A4GX-01	PUM2	ENST00000361078.2,ENST00000403432.1,ENST00000338086.5,ENST00000319801.5,ENST00000536417.1,ENST00000440577.1	chr2	20451070:20451477:20453582:20453775:20454623:20454718,	20453583	20453775	20453761	20453761	Frame_Shift_Del	T	-	p.K962fs
STAD	TCGA-HU-A4GX-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36676993:36677286:36679728:36679962:36680496:36680691,	36679729	36679962	36679799	36679799	Frame_Shift_Del	G	-	p.I310fs
STAD	TCGA-HU-A4GX-01	SND1	ENST00000468166.1,ENST00000465900.1,ENST00000354725.3	chr7	127361340:127361454:127447537:127447627:127484376:127484477,	127447538	127447627	127447605	127447606	Frame_Shift_Ins	-	A	p.R407fs
STAD	TCGA-HU-A4GX-01	LRRC49	ENST00000559806.1,ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558808.1,ENST00000558456.1,ENST00000560107.2,ENST00000561081.1,ENST00000560980.1,ENST00000260382.5,ENST00000443425.2,ENST00000560691.1	chr15	71256123:71256271:71272439:71272523:71276432:71276544,	71272440	71272523	71272472	71272473	Frame_Shift_Ins	-	A	p.A323fs
STAD	TCGA-HU-A4GX-01	TSC2	ENST00000461648.2,ENST00000353929.4,ENST00000350773.4,ENST00000439117.2,ENST00000401874.2,ENST00000439673.2	chr16	2098033:2098066:2098587:2098754:2100400:2100487,	2098588	2098754	2098716	2098716	Frame_Shift_Del	A	-	p.G33fs
STAD	TCGA-HU-A4GX-01	CA2	ENST00000520127.1	chr8	86377500:86377698:86386552:86386645:86388026:86388089,	86386553	86386645	86386635	86386635	Frame_Shift_Del	T	-	p.I145fs
STAD	TCGA-HU-A4GX-01	FCGRT	ENST00000596975.1	chr19	50016660:50016730:50017138:50017390:50017467:50017541,50016453:50016500:50017138:50017390:50017467:50017566,50016660:50016730:50017138:50017390:50027763:50027825,	50017139	50017390	50017380	50017380	Frame_Shift_Del	G	-	p.L105fs
STAD	TCGA-HU-A4GX-01	FCGRT	ENST00000598936.1	chr19	50016660:50016730:50017138:50017743:50024951:50025070,	50017139	50017743	50017380	50017380	Frame_Shift_Del	G	-	p.L105fs
STAD	TCGA-HU-A4GX-01	MMP9	ENST00000372330.3	chr20	44640775:44640952:44641065:44641221:44641893:44642022,	44641066	44641221	44641172	44641172	Frame_Shift_Del	G	-	p.E427fs
STAD	TCGA-HU-A4GX-01	WDR90	ENST00000549091.1,ENST00000548844.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1,ENST00000552943.1	chr16	708895:709011:709085:709126:709244:709376,	709086	709126	709105	709106	Frame_Shift_Ins	-	C	p.A1011fs
STAD	TCGA-HU-A4GX-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855926	100855927	Frame_Shift_Ins	-	G	p.R297fs
STAD	TCGA-HU-A4GX-01	SLC12A6	ENST00000458406.2,ENST00000559664.1,ENST00000397707.2,ENST00000397702.2,ENST00000290209.5,ENST00000561080.1,ENST00000560332.1,ENST00000560611.1,ENST00000558589.1,ENST00000558667.1,ENST00000354181.3,ENST00000559523.1	chr15	34548436:34548484:34549842:34549989:34551013:34551145,	34549843	34549989	34549916	34549916	Frame_Shift_Del	A	-	p.L206fs
STAD	TCGA-HU-A4GX-01	DENND6A	ENST00000311128.5	chr3	57616651:57616705:57618991:57619081:57620284:57620349,	57618992	57619081	57619023	57619023	Frame_Shift_Del	A	-	p.L441fs
STAD	TCGA-HU-A4GX-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688199	60688200	Frame_Shift_Ins	-	C	p.G616fs
STAD	TCGA-HU-A4GX-01	BCL11A	ENST00000537768.1	chr2	60679711:60679801:60687816:60688879:60689416:60689559,	60687817	60688879	60688199	60688200	Frame_Shift_Ins	-	C	p.G616fs
STAD	TCGA-HU-A4GX-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688199	60688200	Frame_Shift_Ins	-	C	p.G616fs
STAD	TCGA-HU-A4GX-01	GINM1	ENST00000367419.5	chr6	149900969:149901126:149901728:149901859:149903575:149903739,	149901729	149901859	149901801	149901801	Frame_Shift_Del	T	-	p.V220fs
STAD	TCGA-HU-A4GX-01	POSTN	ENST00000379742.4	chr13	38143880:38143958:38144716:38144806:38145505:38145565,38143880:38143958:38144716:38144806:38151889:38151934,	38144717	38144806	38144790	38144790	Frame_Shift_Del	T	-	p.Y733fs
STAD	TCGA-HU-A4GX-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203379610:203379702:203383544:203383775:203384809:203384924,	203383545	203383775	203383617	203383617	Frame_Shift_Del	T	-	p.V231fs
STAD	TCGA-HU-A4GX-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	431582:431733:432247:432372:432765:432947,	432248	432372	432249	432249	Frame_Shift_Del	T	-	p.D759fs
STAD	TCGA-HU-A4GX-01	USP54	ENST00000413442.1,ENST00000451492.1	chr10	75331178:75331271:75335269:75335433:75351035:75351096,	75335270	75335433	75335385	75335385	Frame_Shift_Del	C	-	p.G11fs
STAD	TCGA-HU-A4GX-01	TGFBR3	ENST00000525962.1,ENST00000532540.1,ENST00000465892.2,ENST00000370399.2,ENST00000212355.4	chr1	92200332:92200516:92224169:92224307:92262843:92263028,	92224170	92224307	92224226	92224226	Frame_Shift_Del	G	-	p.L110fs
STAD	TCGA-HU-A4GX-01	CIZ1	ENST00000491954.1,ENST00000415526.1,ENST00000325721.8	chr9	130942726:130942802:130942999:130943078:130947825:130947954,	130943000	130943078	130943046	130943047	Frame_Shift_Ins	-	G	p.P242fs
STAD	TCGA-HU-A4GX-01	CIZ1	ENST00000357558.5,ENST00000393608.1,ENST00000372938.5,ENST00000541172.1,ENST00000277465.4,ENST00000488559.2,ENST00000498156.1,ENST00000538431.1,ENST00000372948.3,ENST00000372954.1,ENST00000324544.2,ENST00000476727.2	chr9	130942726:130942802:130942999:130943093:130947825:130947954,	130943000	130943093	130943046	130943047	Frame_Shift_Ins	-	G	p.P242fs
STAD	TCGA-HU-A4GX-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851665	71851665	Frame_Shift_Del	G	-	p.K144fs
STAD	TCGA-HU-A4GX-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322259	27322259	Frame_Shift_Del	T	-	p.Q1235fs
STAD	TCGA-HU-A4GX-01	ANKFY1	ENST00000572412.1,ENST00000574367.1	chr17	4084548:4084667:4085475:4085647:4086692:4086846,	4085476	4085647	4085525	4085525	Frame_Shift_Del	G	-	p.P733fs
STAD	TCGA-HU-A4GX-01	ANKFY1	ENST00000341657.4,ENST00000570535.1	chr17	4084548:4084667:4085475:4085644:4086692:4086846,	4085476	4085644	4085525	4085525	Frame_Shift_Del	G	-	p.P733fs
STAD	TCGA-HU-A4GX-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173277	126173278	Frame_Shift_Ins	-	G	p.H720fs
STAD	TCGA-CG-5728-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413803	43413803	Frame_Shift_Del	T	-	p.V135fs
STAD	TCGA-CG-5728-01	LAT	ENST00000564277.1,ENST00000454369.2,ENST00000566177.1	chr16	28997174:28997209:28997455:28997537:28997702:28997719,28997174:28997209:28997455:28997537:28997705:28997767,	28997456	28997537	28997465	28997465	Frame_Shift_Del	C	-	p.A94fs
STAD	TCGA-CG-5728-01	FGB	ENST00000302068.4,ENST00000502545.1	chr4	155487640:155487824:155488744:155488972:155489532:155489646,	155488745	155488972	155488796	155488797	Frame_Shift_Del	TA	-	p.181_181del
STAD	TCGA-CG-5728-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324556	27324560	Frame_Shift_Del	TTTCT	-	p.940_942del
STAD	TCGA-CG-5728-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299981	107299981	Frame_Shift_Del	T	-	p.N326fs
STAD	TCGA-CG-5728-01	AOX1	ENST00000485965.1,ENST00000374700.2	chr2	201476106:201476216:201477331:201477516:201478526:201478689,	201477332	201477516	201477410	201477410	Frame_Shift_Del	T	-	p.V447fs
STAD	TCGA-CG-5728-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000553455.1,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64586147:64586327:64587644:64587779:64588729:64588851,	64587645	64587779	64587756	64587757	Frame_Shift_Ins	-	A	p.Q4379fs
STAD	TCGA-CG-5728-01	DPYD	ENST00000370192.3	chr1	98157276:98157354:98164906:98165103:98187065:98187210,	98164907	98165103	98165042	98165043	Frame_Shift_Ins	-	T	p.M182fs
STAD	TCGA-CG-5728-01	NRCAM	ENST00000351718.4,ENST00000465585.1,ENST00000413765.2	chr7	107800805:107800937:107816874:107817051:107818434:107818557,	107816875	107817051	107816975	107816976	Frame_Shift_Ins	-	T	p.N1017fs
STAD	TCGA-CG-5728-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.M2803fs
STAD	TCGA-CG-5728-01	PIK3AP1	ENST00000371110.2,ENST00000371109.3,ENST00000467625.1,ENST00000339364.5	chr10	98355321:98355391:98362036:98362155:98363735:98363806,	98362037	98362155	98362066	98362066	Frame_Shift_Del	G	-	p.R778fs
STAD	TCGA-CG-5728-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589601	160589602	Frame_Shift_Del	TT	-	p.277_277del
STAD	TCGA-CG-5728-01	TTLL3	ENST00000427220.1	chr3	9857757:9857886:9859328:9859443:9860238:9860604,	9859329	9859443	9859427	9859428	Frame_Shift_Ins	-	A	p.D281fs
STAD	TCGA-CG-5728-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50647289:50647400:50649180:50649324:50655214:50655418,	50649181	50649324	50649247	50649248	Frame_Shift_Del	TG	-	p.264_265del
STAD	TCGA-CG-5728-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-CG-5728-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-CG-5728-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100977562:100977658:100990144:100990303:100994164:100994344,	100990145	100990303	100990287	100990288	Frame_Shift_Ins	-	C	p.V1126fs
STAD	TCGA-CG-5728-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206848	89206848	Frame_Shift_Del	A	-	p.D75fs
STAD	TCGA-CG-5728-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000512607.2,ENST00000452673.2	chr5	179147404:179147561:179149804:179150020:179150660:179150780,	179149805	179150020	179149920	179149921	Frame_Shift_Del	TT	-	p.433_433del
STAD	TCGA-CG-5728-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48689309:48689481:48689869:48689986:48690434:48690548,	48689870	48689986	48689915	48689915	Frame_Shift_Del	G	-	p.G1903fs
STAD	TCGA-CG-5728-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831996	58831999	Frame_Shift_Del	AGAG	-	p.1063_1064del
STAD	TCGA-CG-5728-01	FAM208B	ENST00000328090.5	chr10	5765639:5765740:5766392:5766496:5768847:5768920,	5766393	5766496	5766449	5766449	Frame_Shift_Del	G	-	p.Q101fs
STAD	TCGA-CG-5728-01	IBTK	ENST00000503400.1,ENST00000369751.2	chr6	82943875:82943972:82949882:82950560:82957278:82957388,	82949883	82950560	82949955	82949956	Frame_Shift_Del	TT	-	p.83_84del
STAD	TCGA-CG-5728-01	TP53BP2	ENST00000473135.1,ENST00000343537.7	chr1	223998165:223998215:224001941:224002055:224008921:224009069,	224001942	224002055	224001956	224001956	Frame_Shift_Del	G	-	p.P92fs
STAD	TCGA-CG-5728-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42225074:42225162:42232399:42232529:42232822:42232898,	42232400	42232529	42232493	42232493	Frame_Shift_Del	T	-	p.N100fs
STAD	TCGA-CG-5728-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11000726	11000726	Frame_Shift_Del	G	-	p.P459fs
STAD	TCGA-CG-5728-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11000726	11000726	Frame_Shift_Del	G	-	p.P459fs
STAD	TCGA-CG-5728-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19905597	19905598	Frame_Shift_Del	TC	-	p.367_367del
STAD	TCGA-CG-5728-01	DDX18	ENST00000263239.2,ENST00000415038.1	chr2	118583022:118583175:118583844:118583958:118586524:118586541,	118583845	118583958	118583908	118583909	Frame_Shift_Ins	-	T	p.I529fs
STAD	TCGA-CG-5728-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139606259:139606442:139609146:139609213:139610961:139611141,	139609147	139609213	139609210	139609210	Frame_Shift_Del	C	-	p.E1457fs
STAD	TCGA-CG-5728-01	PTER	ENST00000378000.1,ENST00000298942.3,ENST00000535784.2	chr10	16528350:16528616:16547018:16547159:16553044:16553133,	16547019	16547159	16547037	16547038	Frame_Shift_Del	AG	-	p.239_239del
STAD	TCGA-CG-5728-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102450870:102450925:102452361:102452440:102456280:102456394,	102452362	102452440	102452432	102452433	Frame_Shift_Del	AA	-	p.255_255del
STAD	TCGA-CG-5728-01	CCDC102B	ENST00000360242.5,ENST00000358653.5	chr18	66465316:66465418:66503985:66504606:66505942:66506163,	66503986	66504606	66504311	66504311	Frame_Shift_Del	A	-	p.E104fs
STAD	TCGA-CG-5728-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56762882:56763066:56765850:56766050:56768509:56768704,	56765851	56766050	56765964	56765965	Frame_Shift_Ins	-	A	p.E751fs
STAD	TCGA-CG-5728-01	SMARCC2	ENST00000548130.1,ENST00000267064.4,ENST00000549209.1,ENST00000552931.1	chr12	56566211:56566274:56566368:56566488:56567479:56567633,	56566369	56566488	56566437	56566438	Frame_Shift_Del	TC	-	p.599_599del
STAD	TCGA-CG-5728-01	RREB1	ENST00000379938.2,ENST00000334984.6	chr6	7226699:7226889:7229229:7232140:7246656:7247454,7226699:7226889:7229229:7232140:7240670:7240835,	7229230	7232140	7232077	7232077	Frame_Shift_Del	C	-	p.C1248fs
STAD	TCGA-CG-5728-01	AKR1C3	ENST00000605149.1,ENST00000439082.2,ENST00000380554.3	chr10	5144296:5144402:5144676:5144842:5147786:5147869,	5144677	5144842	5144691	5144691	Frame_Shift_Del	C	-	p.S232fs
STAD	TCGA-CG-5728-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729489	19729489	Frame_Shift_Del	A	-	p.S267fs
STAD	TCGA-CG-5728-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610623	52610623	Frame_Shift_Del	T	-	p.M1184fs
STAD	TCGA-CG-5728-01	HNRNPM	ENST00000594907.1,ENST00000600092.1,ENST00000601645.1,ENST00000325495.4	chr19	8509877:8509995:8520288:8520458:8527412:8527465,	8520289	8520458	8520329	8520329	Frame_Shift_Del	A	-	p.E51fs
STAD	TCGA-CG-5728-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823938	114823938	Frame_Shift_Del	T	-	p.N431fs
STAD	TCGA-CG-5728-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673611	186673611	Frame_Shift_Del	A	-	p.G6615fs
STAD	TCGA-CG-5728-01	LAMB3	ENST00000455193.1,ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209789925:209789969:209790754:209790931:209791251:209791393,	209790755	209790931	209790820	209790820	Frame_Shift_Del	C	-	p.A1055fs
STAD	TCGA-CG-5728-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352134	113352135	Frame_Shift_Ins	-	A	p.N477fs
STAD	TCGA-CG-5728-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
STAD	TCGA-CG-5728-01	RPS7	ENST00000403564.1,ENST00000304921.5,ENST00000406376.1,ENST00000491937.1,ENST00000407445.3,ENST00000462576.1	chr2	3624148:3624220:3625299:3625364:3627699:3627850,	3625300	3625364	3625326	3625326	Frame_Shift_Del	A	-	p.R106fs
STAD	TCGA-CG-5728-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101612	27101612	Frame_Shift_Del	C	-	p.Q1631fs
STAD	TCGA-CG-5728-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101612	27101612	Frame_Shift_Del	C	-	p.Q1631fs
STAD	TCGA-CG-5728-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.N103fs
STAD	TCGA-CG-5728-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128473	202128473	Frame_Shift_Del	C	-	p.A125fs
STAD	TCGA-CG-5728-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128473	202128473	Frame_Shift_Del	C	-	p.A125fs
STAD	TCGA-CG-5728-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128473	202128473	Frame_Shift_Del	C	-	p.A125fs
STAD	TCGA-CG-5728-01	GTF3C5	ENST00000439697.1,ENST00000372095.5	chr9	135906404:135906551:135919114:135919313:135926169:135926283,	135919115	135919313	135919245	135919245	Frame_Shift_Del	C	-	p.I168fs
STAD	TCGA-CG-5728-01	LAMA5	ENST00000370691.2	chr20	60885043:60885137:60885233:60885367:60885720:60885885,	60885234	60885367	60885264	60885264	Frame_Shift_Del	G	-	p.Y3569fs
STAD	TCGA-CG-5728-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86043994:86044196:86047081:86047267:86048023:86048198,	86047082	86047267	86047209	86047209	Frame_Shift_Del	A	-	p.Q699fs
STAD	TCGA-CG-5728-01	FAM184A	ENST00000521531.1,ENST00000338891.7	chr6	119344109:119344245:119345123:119345978:119399305:119399537,	119345124	119345978	119345777	119345777	Frame_Shift_Del	T	-	p.M121fs
STAD	TCGA-CG-5728-01	KATNBL1	ENST00000560671.1,ENST00000560247.1	chr15	34446844:34446885:34455760:34455891:34502151:34502212,	34455761	34455891	34455847	34455848	Frame_Shift_Ins	-	T	p.R11fs
STAD	TCGA-CG-5728-01	PARP15	ENST00000473627.1,ENST00000464300.2,ENST00000465304.1,ENST00000310366.4	chr3	122340290:122340458:122345673:122345880:122350932:122351020,	122345674	122345880	122345823	122345823	Frame_Shift_Del	A	-	p.M460fs
STAD	TCGA-CG-5728-01	ERMP1	ENST00000339450.5,ENST00000489219.1,ENST00000214893.5,ENST00000543230.1,ENST00000462592.1	chr9	5801271:5801328:5805026:5805217:5805610:5805785,	5805027	5805217	5805191	5805191	Frame_Shift_Del	A	-	p.Y584fs
STAD	TCGA-CG-5728-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459056	27459056	Frame_Shift_Del	A	-	p.A389fs
STAD	TCGA-CG-5728-01	ANK2	ENST00000394537.3,ENST00000357077.4,ENST00000506722.1,ENST00000510275.2,ENST00000509550.1,ENST00000264366.6	chr4	114294245:114294329:114294440:114294605:114302612:114302627,	114294441	114294605	114294543	114294543	Frame_Shift_Del	G	-	p.E3932fs
STAD	TCGA-CG-5728-01	OAT	ENST00000368845.5	chr10	126097461:126097534:126100541:126100769:126107441:126107505,	126100542	126100769	126100644	126100644	Frame_Shift_Del	T	-	p.T33fs
STAD	TCGA-CG-5728-01	TMEM165	ENST00000381334.5	chr4	56269409:56269505:56277780:56278006:56283238:56283412,56262417:56262563:56277780:56278006:56283238:56283412,	56277781	56278006	56277913	56277913	Frame_Shift_Del	T	-	p.T113fs
STAD	TCGA-CG-5728-01	ABLIM2	ENST00000545242.1,ENST00000361581.5,ENST00000296372.8,ENST00000341937.5	chr4	8021344:8021398:8021928:8022030:8029485:8029584,8021344:8021398:8021928:8022030:8031382:8031503,	8021929	8022030	8021936	8021937	Frame_Shift_Ins	-	T	p.H454fs
STAD	TCGA-CG-5728-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717769	89717770	Frame_Shift_Ins	-	A	p.L265fs
STAD	TCGA-CG-5728-01	AUNIP	ENST00000374298.3	chr1	26161512:26162337:26163903:26164045:26185770:26185903,	26163904	26164045	26163989	26163992	Frame_Shift_Del	CTTT	-	p.45_46del
STAD	TCGA-CG-5728-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735432	95735432	Frame_Shift_Del	A	-	p.L883fs
STAD	TCGA-CG-5728-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99894246	99894246	Frame_Shift_Del	C	-	p.D468fs
STAD	TCGA-CG-5728-01	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58000970	58000970	Frame_Shift_Del	G	-	p.L108fs
STAD	TCGA-CG-5728-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58000970	58000970	Frame_Shift_Del	G	-	p.L108fs
STAD	TCGA-CG-5728-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484537	56484610	Frame_Shift_Del	TTCTCCGCCTGATCCTTCCTTTCCAGCTCCAACTTAAGGCATCTGAGTGTATTATTTGTTTCATCTAGTTTATC	-	p.1408_1432del
STAD	TCGA-CG-4437-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181797	100181816	Frame_Shift_Del	AAAAGTTAGAATTCTTGAAA	-	p.137_143del
STAD	TCGA-CG-4437-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165550830	165550830	Frame_Shift_Del	A	-	p.H1063fs
STAD	TCGA-CG-4437-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165550830	165550830	Frame_Shift_Del	A	-	p.H1063fs
STAD	TCGA-CG-4437-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439202	52439220	Frame_Shift_Del	TGAACCCCATTGAGGCTGC	-	p.341_347del
STAD	TCGA-CG-4437-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151152656	151152698	Frame_Shift_Del	TCCCGATCATGGTTATCTGAGTTTGCTGTATGACTCTCCCAGT	-	p.803_817del
STAD	TCGA-CG-4437-01	LAD1	ENST00000367313.3,ENST00000391967.2	chr1	201353919:201353963:201354828:201354933:201355462:201355693,	201354829	201354933	201354882	201354918	Frame_Shift_Del	GCTGTGTGGGTGAGGACATATCTGCCTCTTCCTCCTT	-	p.348_360del
STAD	TCGA-CD-8534-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70515426:70515555:70515834:70515891:70517037:70517167,	70515835	70515891	70515860	70515861	Frame_Shift_Ins	-	T	p.I406fs
STAD	TCGA-BR-8372-01	DMKN	ENST00000402589.2,ENST00000498211.1,ENST00000467637.1,ENST00000419602.1,ENST00000480502.1,ENST00000601650.1,ENST00000462126.1,ENST00000464709.2,ENST00000408915.2,ENST00000483855.1,ENST00000414866.2,ENST00000602781.1,ENST00000429837.1,ENST00000462721.1,ENST00000436012.1,ENST00000493979.1,ENST00000460327.1,ENST00000339686.3,ENST00000597212.1,ENST00000490622.1,ENST00000467532.1,ENST00000469960.1,ENST00000460051.1,ENST00000492341.2,ENST00000463292.1,ENST00000488762.1,ENST00000434389.1,ENST00000488542.2,ENST00000443640.1,ENST00000472252.2	chr19	35989621:35989665:35989775:35989799:35990859:35990931,	35989776	35989799	35989794	35989795	Frame_Shift_Ins	-	C	p.G455fs
STAD	TCGA-BR-8372-01	CHRNA1	ENST00000348749.5,ENST00000409219.1,ENST00000409323.1	chr2	175618946:175619142:175622293:175622403:175624058:175624103,	175622294	175622403	175622346	175622346	Frame_Shift_Del	T	-	p.I123fs
STAD	TCGA-BR-8372-01	STAB1	ENST00000321725.6	chr3	52545665:52545761:52546356:52546452:52546611:52546659,	52546357	52546452	52546401	52546401	Frame_Shift_Del	C	-	p.C976fs
STAD	TCGA-BR-8372-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370840	240370840	Frame_Shift_Del	C	-	p.P909fs
STAD	TCGA-BR-8372-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000553975.1,ENST00000393170.2,ENST00000334746.5	chr14	93717808:93717998:93719992:93720136:93723540:93723701,	93719993	93720136	93720047	93720048	Frame_Shift_Ins	-	T	p.N566fs
STAD	TCGA-BR-8372-01	EEFSEC	ENST00000254730.6	chr3	127983459:127983624:128060075:128060732:128077059:128077216,	128060076	128060732	128060202	128060203	Frame_Shift_Ins	-	C	p.A305fs
STAD	TCGA-BR-8372-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.A201fs
STAD	TCGA-BR-8372-01	TOM1L1	ENST00000540336.1,ENST00000571319.1	chr17	52978237:52978284:52990026:52990176:52991108:52991207,52982849:52982928:52990026:52990176:52991108:52991207,52981073:52981153:52990026:52990176:52991108:52991207,	52990027	52990176	52990096	52990097	Frame_Shift_Del	AA	-	p.97_98del
STAD	TCGA-BR-8372-01	TOM1L1	ENST00000572158.1	chr17	52982849:52982928:52990047:52990176:52991108:52991207,	52990048	52990176	52990096	52990097	Frame_Shift_Del	AA	-	p.97_98del
STAD	TCGA-BR-8372-01	CAPN7	ENST00000253693.2	chr3	15282260:15282360:15282959:15283095:15283684:15283760,	15282960	15283095	15283047	15283047	Frame_Shift_Del	G	-	p.Q580fs
STAD	TCGA-BR-8372-01	GANAB	ENST00000528503.1,ENST00000532402.1,ENST00000346178.4,ENST00000534779.1,ENST00000356638.3,ENST00000540933.1	chr11	62393536:62393637:62393806:62393919:62394042:62394156,	62393807	62393919	62393815	62393815	Frame_Shift_Del	A	-	p.V895fs
STAD	TCGA-BR-8372-01	TRNT1	ENST00000280591.6	chr3	3186267:3186394:3188113:3188247:3189133:3189387,	3188114	3188247	3188232	3188232	Frame_Shift_Del	A	-	p.L242fs
STAD	TCGA-BR-8372-01	TRNT1	ENST00000434583.1,ENST00000251607.6	chr3	3186267:3186394:3188113:3188307:3189133:3189387,	3188114	3188307	3188232	3188232	Frame_Shift_Del	A	-	p.L242fs
STAD	TCGA-BR-8372-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
STAD	TCGA-BR-8372-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984684	123984684	Frame_Shift_Del	C	-	p.A465fs
STAD	TCGA-BR-8372-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-BR-8372-01	ACSS2	ENST00000468550.2	chr20	33501555:33501628:33501898:33501920:33502125:33502240,	33501899	33501920	33501910	33501911	Frame_Shift_Ins	-	G	p.R219fs
STAD	TCGA-BR-8372-01	ACSS2	ENST00000253382.5,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33501555:33501628:33501898:33501974:33502125:33502240,	33501899	33501974	33501910	33501911	Frame_Shift_Ins	-	G	p.R219fs
STAD	TCGA-BR-8372-01	DLG5	ENST00000475613.2,ENST00000372388.2,ENST00000424842.1,ENST00000489547.1,ENST00000372391.2,ENST00000463362.1,ENST00000459739.1,ENST00000468332.2	chr10	79569304:79569488:79570851:79570992:79571681:79571815,	79570852	79570992	79570872	79570873	Frame_Shift_Ins	-	GG	p.P1481fs
STAD	TCGA-BR-8372-01	CSNK2A2	ENST00000262506.3,ENST00000566813.1	chr16	58201588:58201699:58202513:58202597:58208354:58208414,	58202514	58202597	58202515	58202515	Frame_Shift_Del	T	-	p.K171fs
STAD	TCGA-BR-8372-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184930544	184930545	Frame_Shift_Del	TG	-	p.184_185del
STAD	TCGA-BR-8372-01	SYDE1	ENST00000342784.2,ENST00000600440.1,ENST00000600252.1	chr19	15222123:15222250:15222442:15222603:15223156:15223382,	15222443	15222603	15222547	15222547	Frame_Shift_Del	C	-	p.V507fs
STAD	TCGA-BR-8372-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.A110fs
STAD	TCGA-BR-8372-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
STAD	TCGA-BR-8372-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
STAD	TCGA-BR-8372-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847356	28847356	Frame_Shift_Del	C	-	p.G999fs
STAD	TCGA-BR-8372-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667346	203667346	Frame_Shift_Del	C	-	p.I85fs
STAD	TCGA-BR-8372-01	ABCC9	ENST00000261200.4,ENST00000345162.2,ENST00000261201.4	chr12	22065805:22066000:22068601:22068844:22069870:22070037,	22068602	22068844	22068696	22068696	Frame_Shift_Del	T	-	p.K241fs
STAD	TCGA-BR-8372-01	CARM1	ENST00000586221.1,ENST00000344150.4,ENST00000590699.1,ENST00000589693.1,ENST00000590039.1	chr19	10982585:10982598:11015626:11015752:11018714:11018821,	11015627	11015752	11015633	11015634	Frame_Shift_Ins	-	TG	p.D76fs
STAD	TCGA-BR-8372-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450034	85450035	Frame_Shift_Ins	-	A	p.A488fs
STAD	TCGA-BR-8372-01	EVC	ENST00000264956.6,ENST00000509451.1,ENST00000382674.2	chr4	5743442:5743541:5746930:5747068:5749874:5750033,	5746931	5747068	5746947	5746947	Frame_Shift_Del	A	-	p.E273fs
STAD	TCGA-BR-8372-01	TMEFF2	ENST00000392314.1	chr2	192814742:192815133:192818404:192818563:192820980:192821102,192813768:192815190:192818404:192818563:192820980:192821104,	192818405	192818563	192818525	192818525	Frame_Shift_Del	T	-	p.K303fs
STAD	TCGA-BR-8372-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186544439	186544439	Frame_Shift_Del	T	-	p.N811fs
STAD	TCGA-BR-8372-01	STRN3	ENST00000357479.5	chr14	31382729:31382863:31398406:31398517:31404368:31404506,31388171:31388312:31398406:31398517:31404368:31404506,	31398407	31398517	31398422	31398423	Frame_Shift_Ins	-	C	p.K362fs
STAD	TCGA-BR-8372-01	DDB1	ENST00000540166.1,ENST00000538470.1,ENST00000450997.2,ENST00000301764.7	chr11	61069728:61069831:61070053:61070223:61070517:61070627,	61070054	61070223	61070097	61070097	Frame_Shift_Del	G	-	p.T1024fs
STAD	TCGA-BR-8372-01	MAN2C1	ENST00000565683.1	chr15	75651399:75651532:75651668:75651779:75651960:75652116,	75651669	75651779	75651720	75651720	Frame_Shift_Del	G	-	p.H670fs
STAD	TCGA-BR-8372-01	MAN2C1	ENST00000563441.1,ENST00000569482.1,ENST00000563368.1,ENST00000563622.1,ENST00000267978.5	chr15	75651399:75651494:75651668:75651766:75651960:75652116,	75651669	75651766	75651720	75651720	Frame_Shift_Del	G	-	p.H670fs
STAD	TCGA-BR-8372-01	PIK3CG	ENST00000496166.1	chr7	106505783:106505871:106507994:106510001:106512981:106513047,	106507995	106510001	106508995	106508995	Frame_Shift_Del	C	-	p.T330fs
STAD	TCGA-BR-8372-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000376237.4,ENST00000487245.1	chr6	31237742:31237862:31237986:31238262:31238849:31239108,	31237987	31238262	31238246	31238247	Frame_Shift_Del	GT	-	p.212_213del
STAD	TCGA-BR-8372-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998164	169998165	Frame_Shift_Ins	-	A	p.V285fs
STAD	TCGA-BR-8372-01	DMBT1	ENST00000368909.3,ENST00000344338.3,ENST00000368955.3,ENST00000338354.3	chr10	124368624:124368657:124369430:124369754:124370733:124370763,	124369431	124369754	124369595	124369595	Frame_Shift_Del	T	-	p.T1298fs
STAD	TCGA-BR-8372-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409X
STAD	TCGA-BR-8372-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068108	88068108	Frame_Shift_Del	A	-	p.K106fs
STAD	TCGA-BR-8372-01	HMGN2	ENST00000464888.1,ENST00000361427.5,ENST00000466194.1,ENST00000463817.1	chr1	26800193:26800223:26800575:26800626:26801062:26801158,	26800576	26800626	26800609	26800609	Frame_Shift_Del	A	-	p.P41fs
STAD	TCGA-BR-8372-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789283	150789283	Frame_Shift_Del	G	-	p.R595fs
STAD	TCGA-BR-8372-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186545480	186545480	Frame_Shift_Del	T	-	p.N464fs
STAD	TCGA-BR-8372-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000402799.1,ENST00000406482.1,ENST00000395344.3,ENST00000402192.2	chr11	47311699:47311850:47312160:47312367:47315433:47315534,	47312161	47312367	47312236	47312236	Frame_Shift_Del	G	-	p.R1077fs
STAD	TCGA-BR-8372-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138452697	138452697	Frame_Shift_Del	A	-	p.N183fs
STAD	TCGA-BR-8372-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837127	17837128	Frame_Shift_Del	CT	-	p.379_380del
STAD	TCGA-BR-8368-01	PTPN12	ENST00000248594.6,ENST00000435495.2,ENST00000415482.2	chr7	77240264:77240363:77247796:77247882:77256021:77256992,	77247797	77247882	77247840	77247840	Frame_Shift_Del	A	-	p.E328fs
STAD	TCGA-BR-8368-01	CACNA1C	ENST00000399638.1,ENST00000406454.3,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000399603.1,ENST00000399617.1,ENST00000399641.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000399634.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2795331:2795435:2797612:2797945:2800065:2800459,	2797613	2797945	2797835	2797835	Frame_Shift_Del	G	-	p.G2085fs
STAD	TCGA-BR-8368-01	SF3B3	ENST00000302516.5,ENST00000563739.1	chr16	70598967:70599173:70599270:70599427:70601313:70601439,	70599271	70599427	70599405	70599405	Frame_Shift_Del	A	-	p.E935fs
STAD	TCGA-BR-8368-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472698	92472698	Frame_Shift_Del	T	-	p.K541fs
STAD	TCGA-BR-8368-01	RALGDS	ENST00000372062.3,ENST00000498797.1,ENST00000393160.3,ENST00000372047.3,ENST00000372050.3,ENST00000542690.1,ENST00000393157.3	chr9	135974024:135974149:135975654:135975769:135976906:135976969,	135975655	135975769	135975666	135975667	Frame_Shift_Del	GA	-	p.853_853del
STAD	TCGA-BR-8368-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409X
STAD	TCGA-BR-8368-01	KLHDC3	ENST00000326974.4,ENST00000332245.8,ENST00000244670.8	chr6	42985882:42985954:42986080:42986294:42986370:42986457,	42986081	42986294	42986249	42986249	Frame_Shift_Del	C	-	p.C229fs
STAD	TCGA-BR-8368-01	SYTL2	ENST00000316356.4	chr11	85459314:85459466:85468667:85469157:85521996:85522172,	85468668	85469157	85468672	85468673	Frame_Shift_Del	CT	-	p.33_33del
STAD	TCGA-BR-8368-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.N865fs
STAD	TCGA-BR-8368-01	SLC12A9	ENST00000462106.1,ENST00000540482.1,ENST00000354161.3,ENST00000428758.1	chr7	100450398:100450461:100451777:100452000:100454489:100454798,100450398:100450461:100451777:100452000:100456456:100456564,100450374:100450457:100451777:100452000:100454489:100454798,100450374:100450457:100451777:100452000:100452241:100452376,	100451778	100452000	100452000	100452000	Frame_Shift_Del	G	-	p.I60fs
STAD	TCGA-BR-8368-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32457055:32457416:32459368:32459512:32466287:32466439,	32459369	32459512	32459462	32459462	Frame_Shift_Del	T	-	p.P797fs
STAD	TCGA-BR-8368-01	CA2	ENST00000520127.1	chr8	86377500:86377698:86386552:86386645:86388026:86388089,	86386553	86386645	86386635	86386635	Frame_Shift_Del	T	-	p.I145fs
STAD	TCGA-BR-8368-01	PER2	ENST00000254658.3,ENST00000254657.3	chr2	239152678:239155165:239157702:239157853:239159191:239159384,	239157703	239157853	239157776	239157777	Frame_Shift_Del	CT	-	p.1182_1182del
STAD	TCGA-BR-8368-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921733	Frame_Shift_Del	GG	-	p.779_780del
STAD	TCGA-BR-8368-01	SLC46A3	ENST00000380814.4,ENST00000266943.6	chr13	29287116:29287687:29291946:29292159:29292632:29292978,	29291947	29292159	29291959	29291959	Frame_Shift_Del	A	-	p.A60fs
STAD	TCGA-BR-8368-01	UBXN1	ENST00000294119.2,ENST00000534176.1,ENST00000529640.1,ENST00000301935.5	chr11	62444452:62444477:62444989:62445106:62445252:62445304,	62444990	62445106	62445075	62445075	Frame_Shift_Del	G	-	p.P189fs
STAD	TCGA-BR-8368-01	LDHA	ENST00000396222.2,ENST00000430553.2,ENST00000227157.4,ENST00000494573.2,ENST00000541097.1,ENST00000539814.1	chr11	18416132:18416183:18418365:18418515:18420977:18421068,	18418366	18418515	18418442	18418442	Frame_Shift_Del	C	-	p.T47fs
STAD	TCGA-BR-8368-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
STAD	TCGA-BR-8368-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-BR-8368-01	TBC1D4	ENST00000431480.2,ENST00000377636.3,ENST00000377625.2,ENST00000425511.1	chr13	75866237:75866407:75868989:75869149:75873465:75873710,	75868990	75869149	75869048	75869048	Frame_Shift_Del	G	-	p.W1087fs
STAD	TCGA-BR-8368-01	MEAF6	ENST00000373074.1,ENST00000296214.5	chr1	37959534:37959708:37961485:37961519:37967404:37967597,	37961486	37961519	37961494	37961495	Frame_Shift_Ins	-	T	p.P197fs
STAD	TCGA-BR-8368-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108175401:108175579:108178623:108178711:108180886:108181042,	108178624	108178711	108178656	108178656	Frame_Shift_Del	A	-	p.D1902fs
STAD	TCGA-BR-8368-01	BMP1	ENST00000354870.5,ENST00000306385.5,ENST00000520982.1,ENST00000520970.1,ENST00000520626.1	chr8	22064815:22065029:22066957:22067208:22069106:22069405,	22066958	22067208	22067038	22067038	Frame_Shift_Del	G	-	p.P885fs
STAD	TCGA-BR-8368-01	LRRK2	ENST00000416796.1,ENST00000298910.7,ENST00000343742.2	chr12	40653281:40653406:40657590:40657703:40668384:40668529,	40657591	40657703	40657646	40657647	Frame_Shift_Ins	-	A	p.V533fs
STAD	TCGA-BR-8368-01	MAPK8	ENST00000432379.1,ENST00000374176.4,ENST00000374174.1,ENST00000395611.3,ENST00000374182.3,ENST00000476134.1,ENST00000360332.3,ENST00000374179.3,ENST00000374189.1,ENST00000426557.1	chr10	49609654:49609825:49612894:49613024:49617921:49617980,	49612895	49613024	49613018	49613019	Frame_Shift_Ins	-	A	p.H82fs
STAD	TCGA-BR-8368-01	HPX	ENST00000533856.1,ENST00000533369.1,ENST00000525057.1,ENST00000265983.3,ENST00000534800.1,ENST00000528348.1	chr11	6453135:6453247:6461696:6461768:6461901:6461954,6461394:6461516:6461696:6461768:6461901:6461954,	6461697	6461768	6461701	6461701	Frame_Shift_Del	A	-	p.K71fs
STAD	TCGA-BR-8368-01	SLC7A2	ENST00000398090.3,ENST00000470360.1	chr8	17409272:17409495:17412454:17412591:17415803:17415906,	17412455	17412591	17412535	17412538	Frame_Shift_Del	GAGT	-	p.419_420del
STAD	TCGA-BR-8368-01	RASGRF1	ENST00000394745.3,ENST00000560334.1,ENST00000558480.2,ENST00000419573.3	chr15	79290437:79290550:79291060:79291167:79292084:79292153,	79291061	79291167	79291158	79291158	Frame_Shift_Del	G	-	p.P935fs
STAD	TCGA-BR-8368-01	RPS6KA5	ENST00000261991.3,ENST00000418736.2,ENST00000554206.1,ENST00000536315.2	chr14	91413778:91413894:91444649:91444868:91467431:91467503,	91444650	91444868	91444703	91444703	Frame_Shift_Del	A	-	p.L114fs
STAD	TCGA-BR-8368-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371752.1	chr20	47871031:47871186:47872344:47872484:47873953:47874201,	47872345	47872484	47872464	47872465	Frame_Shift_Ins	-	T	p.K895fs
STAD	TCGA-BR-8368-01	ANKRD13D	ENST00000506531.1	chr11	67059608:67059651:67066528:67067082:67067297:67067359,	67066529	67067082	67066574	67066575	Frame_Shift_Del	TG	-	p.259_259del
STAD	TCGA-BR-8368-01	ANKRD13D	ENST00000511455.2,ENST00000308440.6,ENST00000514166.1,ENST00000504186.1,ENST00000447274.2	chr11	67059608:67059651:67066528:67066595:67067000:67067082,	67066529	67066595	67066574	67066575	Frame_Shift_Del	TG	-	p.259_259del
STAD	TCGA-BR-8368-01	GLIPR2	ENST00000377959.1,ENST00000377960.4	chr9	36136741:36136788:36147782:36147891:36148543:36148647,	36147783	36147891	36147846	36147847	Frame_Shift_Ins	-	C	p.V26fs
STAD	TCGA-BR-8368-01	DNAH1	ENST00000486752.1,ENST00000420323.2	chr3	52409970:52410009:52412617:52412796:52413920:52414151,	52412618	52412796	52412624	52412624	Frame_Shift_Del	C	-	p.A2402fs
STAD	TCGA-BR-8368-01	TROAP	ENST00000551567.1,ENST00000547807.1,ENST00000551245.1,ENST00000551192.1,ENST00000257909.3	chr12	49717386:49717535:49717627:49717820:49717937:49718175,49717386:49717535:49717627:49717820:49718013:49718199,49717386:49717535:49717627:49717820:49719283:49719288,	49717628	49717820	49717805	49717805	Frame_Shift_Del	C	-	p.G107fs
STAD	TCGA-BR-8368-01	GDF11	ENST00000546799.1	chr12	56137182:56137545:56142369:56142767:56143285:56143667,	56142370	56142767	56142524	56142524	Frame_Shift_Del	A	-	p.L200fs
STAD	TCGA-BR-8368-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P235fs
STAD	TCGA-BR-8368-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735432	95735432	Frame_Shift_Del	A	-	p.L883fs
STAD	TCGA-BR-8368-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562545	32562545	Frame_Shift_Del	T	-	p.D890fs
STAD	TCGA-BR-8368-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661353	40661353	Frame_Shift_Del	A	-	p.P373fs
STAD	TCGA-BR-8368-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4,ENST00000460500.1	chr1	85128137:85128213:85130099:85130235:85131804:85131915,	85130100	85130235	85130170	85130170	Frame_Shift_Del	T	-	p.E202fs
STAD	TCGA-BR-8368-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
STAD	TCGA-D7-A4YX-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198552	20198553	Frame_Shift_Del	TG	-	p.478_478del
STAD	TCGA-D7-A4YX-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101189	27101196	Frame_Shift_Del	GTTGCTCA	-	p.1490_1493del
STAD	TCGA-HU-A4H8-01	GIGYF1	ENST00000275732.5	chr7	100279944:100280105:100280212:100280400:100280634:100280853,	100280213	100280400	100280373	100280373	Frame_Shift_Del	G	-	p.L814fs
STAD	TCGA-HU-A4H8-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257786	Frame_Shift_Del	TT	-	p.15_15del
STAD	TCGA-HU-A4H8-01	ROBO3	ENST00000543966.1	chr11	124747414:124747648:124747832:124748027:124748193:124748332,124747414:124747554:124747832:124748027:124748193:124748332,124747414:124747554:124747832:124748027:124748479:124748609,	124747833	124748027	124747920	124747921	Frame_Shift_Ins	-	G	p.A1025fs
STAD	TCGA-HU-A4H8-01	ROBO3	ENST00000529658.1	chr11	124746770:124746828:124747414:124748027:124748193:124748332,	124747415	124748027	124747920	124747921	Frame_Shift_Ins	-	G	p.A1025fs
STAD	TCGA-HU-A4H8-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098495	144098496	Frame_Shift_Ins	-	G	p.R163fs
STAD	TCGA-HU-A4H8-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26092988	26092989	Frame_Shift_Ins	-	C	p.Y231fs
STAD	TCGA-HU-A4H8-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344889	Frame_Shift_Del	AA	-	p.1387_1387del
STAD	TCGA-HU-A4H8-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556608	155556609	Frame_Shift_Ins	-	G	p.R1028fs
STAD	TCGA-HU-A4H8-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556608	155556609	Frame_Shift_Ins	-	G	p.R1028fs
STAD	TCGA-HU-A4H8-01	CHRNA7	ENST00000454250.3,ENST00000306901.3	chr15	32393505:32393550:32403990:32404100:32446107:32446187,	32403991	32404100	32404035	32404036	Frame_Shift_Ins	-	G	p.P124fs
STAD	TCGA-HU-A4H8-01	NDE1	ENST00000396354.1,ENST00000572967.1,ENST00000576502.1,ENST00000396353.2,ENST00000574109.1,ENST00000342673.5,ENST00000396355.1	chr16	15785098:15785180:15788021:15788113:15790565:15790623,	15788022	15788113	15788046	15788046	Frame_Shift_Del	C	-	p.T243fs
STAD	TCGA-HU-A4H8-01	RB1CC1	ENST00000435644.2,ENST00000539297.1,ENST00000025008.5	chr8	53571432:53571536:53573155:53573217:53573485:53573567,	53573156	53573217	53573204	53573205	Frame_Shift_Ins	-	A	p.L547fs
STAD	TCGA-HU-A4H8-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046886	17046886	Frame_Shift_Del	C	-	p.A351fs
STAD	TCGA-HU-A4H8-01	ERCC8	ENST00000543101.1,ENST00000497892.1,ENST00000477893.1,ENST00000265038.5	chr5	60217880:60217982:60224690:60224786:60240758:60240878,	60224691	60224786	60224781	60224781	Frame_Shift_Del	A	-	p.L28fs
STAD	TCGA-HU-A4H8-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L356fs
STAD	TCGA-HU-A4H8-01	ZDHHC14	ENST00000341375.8,ENST00000359775.5,ENST00000414563.2	chr6	158014040:158014178:158049380:158049518:158053865:158053914,	158049381	158049518	158049476	158049477	Frame_Shift_Del	AC	-	p.220_221del
STAD	TCGA-HU-A4H8-01	AJAP1	ENST00000378191.4	chr1	4715104:4715514:4771959:4772759:4829912:4830000,	4771960	4772759	4772068	4772068	Frame_Shift_Del	G	-	p.P46fs
STAD	TCGA-HU-A4H8-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300216	101300216	Frame_Shift_Del	T	-	p.R63fs
STAD	TCGA-HU-A4H8-01	SMARCB1	ENST00000407082.3,ENST00000263121.7	chr22	24129197:24129449:24133942:24134081:24135745:24135875,	24133943	24134081	24134057	24134057	Frame_Shift_Del	A	-	p.G69fs
STAD	TCGA-HU-A4H8-01	RNF8	ENST00000469731.1,ENST00000479516.1	chr6	37321866:37322051:37328221:37328350:37336259:37336314,	37328222	37328350	37328304	37328304	Frame_Shift_Del	T	-	p.V65fs
STAD	TCGA-HU-A4H8-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048868	42048868	Frame_Shift_Del	G	-	p.P534fs
STAD	TCGA-HU-A4H8-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000530013.1,ENST00000529137.1,ENST00000448981.2	chr11	33790396:33790560:33792286:33792376:33795939:33796050,	33792287	33792376	33792304	33792304	Frame_Shift_Del	T	-	p.Y60fs
STAD	TCGA-HU-A4H8-01	FBXO3	ENST00000530401.1	chr11	33790396:33790560:33792286:33792361:33795939:33796064,	33792287	33792361	33792304	33792304	Frame_Shift_Del	T	-	p.Y60fs
STAD	TCGA-HU-A4H8-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414122	1414122	Frame_Shift_Del	A	-	p.L544X
STAD	TCGA-HU-A4H8-01	LRP1B	ENST00000389484.3,ENST00000437977.1,ENST00000442974.1	chr2	141027810:141027915:141031992:141032167:141055376:141055538,	141031993	141032167	141032033	141032034	Frame_Shift_Ins	-	C	p.H4368fs
STAD	TCGA-HU-A4H8-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4H8-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4H8-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255497	156255498	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4H8-01	NUMBL	ENST00000600967.1	chr19	41179456:41179554:41183136:41183326:41186821:41186962,41179348:41179551:41183136:41183326:41186821:41186962,	41183137	41183326	41183178	41183178	Frame_Shift_Del	C	-	p.G230fs
STAD	TCGA-HU-A4H8-01	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000478733.1,ENST00000431670.2,ENST00000412622.1	chr3	111659381:111659492:111664114:111664204:111672776:111672876,111659381:111659492:111664114:111664204:111667778:111667922,	111664115	111664204	111664163	111664163	Frame_Shift_Del	G	-	p.S815fs
STAD	TCGA-HU-A4H8-01	ATE1	ENST00000535655.1	chr10	123670420:123670666:123673304:123673408:123681863:123681926,123670420:123670666:123673304:123673408:123683780:123683844,	123673305	123673408	123673353	123673353	Frame_Shift_Del	T	-	p.M97fs
STAD	TCGA-HU-A4H8-01	PLEKHA5	ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000538972.1,ENST00000539256.1,ENST00000429027.2,ENST00000424268.1,ENST00000299275.6,ENST00000543806.1	chr12	19518897:19519043:19522626:19522732:19528464:19528519,	19522627	19522732	19522710	19522711	Frame_Shift_Del	AT	-	p.1279_1280del
STAD	TCGA-HU-A4H8-01	TJP2	ENST00000348208.4,ENST00000265384.7,ENST00000539225.1,ENST00000535702.1,ENST00000453658.2,ENST00000377245.4	chr9	71833172:71833275:71835802:71836412:71840219:71840323,	71835803	71836412	71835953	71835953	Frame_Shift_Del	G	-	p.H195fs
STAD	TCGA-HU-A4H8-01	PSMC3	ENST00000298852.3,ENST00000530912.1,ENST00000602866.1	chr11	47440352:47440496:47440666:47440748:47441814:47441960,	47440667	47440748	47440673	47440674	Frame_Shift_Del	CA	-	p.401_402del
STAD	TCGA-HU-A4H8-01	PCGF3	ENST00000470161.2,ENST00000440452.1,ENST00000521023.2,ENST00000505655.2,ENST00000362003.5,ENST00000430644.1	chr4	738387:738476:755066:755204:758771:758852,	755067	755204	755175	755175	Frame_Shift_Del	A	-	p.A190fs
STAD	TCGA-HU-A4H8-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32017774:32018098:32020446:32020770:32021164:32021482,	32020447	32020770	32020536	32020536	Frame_Shift_Del	C	-	p.G3007fs
STAD	TCGA-HU-A4H8-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944121	8944121	Frame_Shift_Del	T	-	p.T371fs
STAD	TCGA-HU-A4H8-01	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005467	47005468	Frame_Shift_Del	AA	-	p.52_53del
STAD	TCGA-HU-A4H8-01	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005467	47005468	Frame_Shift_Del	AA	-	p.52_53del
STAD	TCGA-HU-A4H8-01	GNPDA2	ENST00000507917.1	chr4	44712969:44713154:44719129:44719312:44724100:44724259,	44719130	44719312	44719161	44719161	Frame_Shift_Del	T	-	p.E127fs
STAD	TCGA-HU-A4H8-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000404621.1	chr12	124848224:124848345:124856567:124857156:124862782:124862930,	124856568	124857156	124856837	124856837	Frame_Shift_Del	G	-	p.A847fs
STAD	TCGA-HU-A4H8-01	STAT5B	ENST00000468312.1,ENST00000293328.3,ENST00000415845.1	chr17	40376796:40376886:40379546:40379703:40384017:40384155,	40379547	40379703	40379600	40379600	Frame_Shift_Del	C	-	p.E78fs
STAD	TCGA-HU-A4H8-01	CLCN3	ENST00000515420.1	chr4	170616781:170616843:170618339:170618430:170618511:170618885,	170618340	170618430	170618378	170618379	Frame_Shift_Ins	-	T	p.S352fs
STAD	TCGA-HU-A4H8-01	DHX15	ENST00000336812.4	chr4	24544562:24544649:24550477:24550645:24556347:24556566,	24550478	24550645	24550501	24550502	Frame_Shift_Ins	-	T	p.Q409fs
STAD	TCGA-HU-A4H8-01	C7orf43	ENST00000498638.1	chr7	99754256:99754339:99754467:99754619:99754716:99754762,	99754468	99754619	99754484	99754484	Frame_Shift_Del	G	-	p.P326fs
STAD	TCGA-HU-A4H8-01	C7orf43	ENST00000456769.1,ENST00000457641.1,ENST00000419037.1,ENST00000448720.1,ENST00000316937.3,ENST00000419841.1	chr7	99754256:99754339:99754467:99754615:99754716:99754762,	99754468	99754615	99754484	99754484	Frame_Shift_Del	G	-	p.P326fs
STAD	TCGA-HU-A4H8-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044068	108044069	Frame_Shift_Ins	-	T	p.S548fs
STAD	TCGA-HU-A4H8-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675067	102675067	Frame_Shift_Del	C	-	p.A218fs
STAD	TCGA-HU-A4H8-01	TMTC1	ENST00000539277.1,ENST00000319685.8,ENST00000256062.5,ENST00000551659.1,ENST00000552618.1	chr12	29673550:29673653:29689141:29689250:29709789:29709933,	29689142	29689250	29689236	29689236	Frame_Shift_Del	T	-	p.K564fs
STAD	TCGA-HU-A4H8-01	NEK6	ENST00000545174.1,ENST00000373603.1,ENST00000394199.2,ENST00000546191.1,ENST00000373600.3,ENST00000540326.1,ENST00000539416.1,ENST00000320246.5	chr9	127101849:127101944:127109987:127110101:127113115:127114717,	127109988	127110101	127110068	127110068	Frame_Shift_Del	C	-	p.Y300fs
STAD	TCGA-HU-A4H8-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.F2554fs
STAD	TCGA-HU-A4H8-01	STX18	ENST00000306200.2,ENST00000505286.1,ENST00000507908.1,ENST00000512195.1	chr4	4425244:4425314:4436496:4436585:4440120:4440236,4426899:4426949:4436496:4436585:4440120:4440236,	4436497	4436585	4436579	4436580	Frame_Shift_Ins	-	T	p.I207fs
STAD	TCGA-HU-A4H8-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323946	235323947	Frame_Shift_Ins	-	T	p.T82fs
STAD	TCGA-HU-A4H8-01	CNTRL	ENST00000373845.2,ENST00000373855.1,ENST00000238341.5,ENST00000373850.1	chr9	123924133:123924249:123924331:123924549:123927220:123927378,	123924332	123924549	123924525	123924525	Frame_Shift_Del	A	-	p.E1800fs
STAD	TCGA-HU-A4H8-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934727	223934727	Frame_Shift_Del	G	-	p.S196fs
STAD	TCGA-HU-A4H8-01	CIRBP	ENST00000588230.1,ENST00000589235.1,ENST00000587323.1,ENST00000586472.1,ENST00000585913.1,ENST00000589710.1,ENST00000588090.1,ENST00000586773.1,ENST00000591935.1,ENST00000590171.1,ENST00000585630.1,ENST00000588030.1,ENST00000591097.1,ENST00000589660.1,ENST00000586548.1,ENST00000589686.1,ENST00000320936.5,ENST00000586636.1,ENST00000585914.1,ENST00000587896.1	chr19	1271138:1271245:1271327:1271466:1271549:1271631,	1271328	1271466	1271433	1271433	Frame_Shift_Del	G	-	p.R105fs
STAD	TCGA-HU-A4H8-01	BRD2	ENST00000395289.2,ENST00000482914.1,ENST00000449085.2,ENST00000374831.4,ENST00000607833.1,ENST00000443797.2,ENST00000449025.1,ENST00000374825.4,ENST00000395287.1	chr6	32944189:32944241:32944338:32944713:32945218:32945347,	32944339	32944713	32944465	32944468	Frame_Shift_Del	AGAG	-	p.317_318del
STAD	TCGA-HU-A4H8-01	GNL3	ENST00000474423.1	chr3	52720064:52720121:52720784:52720843:52721261:52721399,52720192:52720441:52720784:52720843:52721261:52721399,	52720785	52720843	52720836	52720836	Frame_Shift_Del	A	-	p.Q22fs
STAD	TCGA-HU-A4H8-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481542	140481542	Frame_Shift_Del	C	-	p.G79fs
STAD	TCGA-HU-A4H8-01	SMPD4	ENST00000351288.6,ENST00000412570.1,ENST00000339679.7,ENST00000443958.2,ENST00000451542.1,ENST00000435455.1,ENST00000431183.2	chr2	130914933:130914969:130921946:130922018:130925030:130925163,	130921947	130922018	130921967	130921967	Frame_Shift_Del	T	-	p.M321fs
STAD	TCGA-HU-A4H8-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939823	137939823	Frame_Shift_Del	G	-	p.P23fs
STAD	TCGA-CD-5800-01	MAGI3	ENST00000369615.1,ENST00000307546.9,ENST00000369611.4,ENST00000369617.4	chr1	114128008:114128218:114133105:114133280:114137102:114137182,	114133106	114133280	114133187	114133188	Frame_Shift_Ins	-	A	p.F282fs
STAD	TCGA-CD-5800-01	HBP1	ENST00000222574.4,ENST00000485846.1,ENST00000463202.1,ENST00000468410.1	chr7	106827013:106827126:106836278:106836596:106840604:106840745,106830617:106830762:106836278:106836596:106840604:106840745,	106836279	106836596	106836508	106836508	Frame_Shift_Del	A	-	p.N442fs
STAD	TCGA-CD-5800-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	41984072:41984159:41990405:41990581:42041214:42041360,	41990406	41990581	41990509	41990510	Frame_Shift_Ins	-	C	p.G1760fs
STAD	TCGA-BR-8690-01	PARD3B	ENST00000358768.2,ENST00000462231.1,ENST00000406610.2,ENST00000349953.3	chr2	206110501:206110546:206165253:206165460:206166187:206166235,	206165254	206165460	206165333	206165334	Frame_Shift_Ins	-	GA	p.A755fs
STAD	TCGA-BR-8363-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844364	123844364	Frame_Shift_Del	G	-	p.Q783fs
STAD	TCGA-BR-8363-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2	chr1	117078586:117078850:117086932:117087226:117113524:117113606,	117086933	117087226	117087118	117087118	Frame_Shift_Del	T	-	p.K60fs
STAD	TCGA-BR-8363-01	TAF2	ENST00000378164.2	chr8	120814033:120814265:120816117:120816259:120818522:120818641,	120816118	120816259	120816158	120816159	Frame_Shift_Del	CT	-	p.174_174del
STAD	TCGA-BR-8363-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645339	Frame_Shift_Del	A	-	p.A201fs
STAD	TCGA-BR-8363-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33345476:33345907:33346607:33346736:33356266:33356389,	33346608	33346736	33346694	33346694	Frame_Shift_Del	G	-	p.P186fs
STAD	TCGA-BR-8363-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951317	102951317	Frame_Shift_Del	A	-	p.K598fs
STAD	TCGA-BR-8363-01	PIAS2	ENST00000545673.1	chr18	44435527:44435578:44444126:44444211:44470542:44471017,44435527:44435578:44444126:44444211:44497284:44497308,	44444127	44444211	44444173	44444174	Frame_Shift_Ins	-	A	p.I180fs
STAD	TCGA-BR-8363-01	EPGN	ENST00000413830.1,ENST00000446430.2	chr4	75177901:75178022:75178734:75178887:75180296:75180354,	75178735	75178887	75178863	75178863	Frame_Shift_Del	T	-	p.I128fs
STAD	TCGA-BR-8363-01	VILL	ENST00000383759.2,ENST00000484717.1,ENST00000283713.6	chr3	38038973:38039176:38039580:38039659:38039756:38039855,	38039581	38039659	38039624	38039625	Frame_Shift_Ins	-	C	p.T270fs
STAD	TCGA-BR-8363-01	PLA2G7	ENST00000274793.7,ENST00000537365.1	chr6	46675727:46675898:46677063:46677155:46678281:46678395,	46677064	46677155	46677134	46677134	Frame_Shift_Del	T	-	p.I267fs
STAD	TCGA-BR-8363-01	E2F7	ENST00000322886.7	chr12	77415027:77417965:77419337:77419762:77421662:77421918,	77419338	77419762	77419717	77419717	Frame_Shift_Del	G	-	p.P729fs
STAD	TCGA-BR-8363-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P235fs
STAD	TCGA-BR-8363-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310573	103310573	Frame_Shift_Del	C	-	p.E591fs
STAD	TCGA-BR-8363-01	GNB1	ENST00000434686.2,ENST00000378609.4,ENST00000437146.1	chr1	1747194:1747301:1749275:1749314:1756835:1756938,	1749276	1749314	1749278	1749279	Frame_Shift_Del	GA	-	p.32_32del
STAD	TCGA-BR-8363-01	CEP68	ENST00000377990.2,ENST00000546106.1,ENST00000260569.4	chr2	65283598:65283662:65296532:65296935:65298587:65298750,	65296533	65296935	65296702	65296702	Frame_Shift_Del	C	-	p.Q41fs
STAD	TCGA-BR-8363-01	PPP6R2	ENST00000359139.3,ENST00000427222.2	chr22	50876602:50876727:50877027:50877191:50878129:50878286,50876602:50876727:50877027:50877191:50878126:50878286,	50877028	50877191	50877036	50877036	Frame_Shift_Del	C	-	p.A658fs
STAD	TCGA-BR-8363-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1,ENST00000527339.1	chr11	65313912:65314035:65314268:65314391:65314909:65315036,	65314269	65314391	65314283	65314283	Frame_Shift_Del	C	-	p.G739fs
STAD	TCGA-BR-8363-01	PDE3B	ENST00000282096.4,ENST00000455098.2	chr11	14865372:14865572:14880588:14880792:14882750:14882912,	14880589	14880792	14880717	14880717	Frame_Shift_Del	T	-	p.R883fs
STAD	TCGA-BR-8363-01	VANGL2	ENST00000368061.2	chr1	160385851:160385972:160388791:160389399:160390200:160390337,	160388792	160389399	160389203	160389203	Frame_Shift_Del	G	-	p.G201fs
STAD	TCGA-BR-8363-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544436	55544436	Frame_Shift_Del	T	-	p.M1218fs
STAD	TCGA-BR-8363-01	CNTRL	ENST00000373845.2,ENST00000373855.1,ENST00000238341.5,ENST00000373850.1	chr9	123924133:123924249:123924331:123924549:123927220:123927378,	123924332	123924549	123924525	123924525	Frame_Shift_Del	A	-	p.E1800fs
STAD	TCGA-BR-8363-01	TUBG2	ENST00000588870.1,ENST00000251412.7	chr17	40811851:40811964:40812166:40812334:40812656:40812725,	40812167	40812334	40812186	40812187	Frame_Shift_Ins	-	C	p.I61fs
STAD	TCGA-BR-8363-01	SETMAR	ENST00000425863.1	chr3	4345054:4345210:4354581:4354913:4355350:4355445,4345054:4345210:4354581:4354913:4355330:4355445,	4354582	4354913	4354867	4354867	Frame_Shift_Del	A	-	p.H147fs
STAD	TCGA-BR-8363-01	SGCD	ENST00000435422.3,ENST00000337851.4,ENST00000517913.1,ENST00000447401.1	chr5	156016240:156016328:156021941:156022061:156074473:156074546,	156021942	156022061	156022056	156022056	Frame_Shift_Del	T	-	p.V166fs
STAD	TCGA-BR-8363-01	EP400	ENST00000389561.2,ENST00000332482.4,ENST00000330386.6,ENST00000389562.2,ENST00000333577.4	chr12	132474508:132474649:132475180:132475259:132475951:132476001,	132475181	132475259	132475215	132475215	Frame_Shift_Del	A	-	p.E862fs
STAD	TCGA-BR-8363-01	SND1	ENST00000354725.3	chr7	127721411:127721553:127724775:127724899:127725762:127725832,	127724776	127724899	127724828	127724828	Frame_Shift_Del	C	-	p.H721fs
STAD	TCGA-BR-8363-01	SLC2A8	ENST00000373352.1	chr9	130159509:130159565:130162185:130162285:130165938:130166026,	130162186	130162285	130162220	130162220	Frame_Shift_Del	G	-	p.R154fs
STAD	TCGA-BR-8363-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64867924	64867925	Frame_Shift_Ins	-	A	p.P260fs
STAD	TCGA-BR-8363-01	BIRC7	ENST00000217169.3	chr20	61867234:61867797:61869254:61869354:61869747:61869829,	61869255	61869354	61869290	61869290	Frame_Shift_Del	G	-	p.Y128X
STAD	TCGA-BR-8363-01	CEP95	ENST00000553956.2,ENST00000556440.2,ENST00000553412.1,ENST00000579860.1	chr17	62515438:62515554:62517519:62517645:62518819:62518872,	62517520	62517645	62517549	62517549	Frame_Shift_Del	A	-	p.S206fs
STAD	TCGA-BR-8363-01	NDUFA12	ENST00000327772.2	chr12	95365253:95365396:95387945:95388033:95391083:95391186,95365253:95365396:95387945:95388033:95396514:95396597,	95387946	95388033	95387988	95387988	Frame_Shift_Del	T	-	p.N72fs
STAD	TCGA-BR-8363-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639588	47639588	Frame_Shift_Del	A	-	p.R227fs
STAD	TCGA-BR-8363-01	STAB1	ENST00000321725.6	chr3	52545665:52545761:52546356:52546452:52546611:52546659,	52546357	52546452	52546401	52546401	Frame_Shift_Del	C	-	p.C976fs
STAD	TCGA-BR-8363-01	MAST4	ENST00000490016.2,ENST00000403625.2,ENST00000447738.1,ENST00000436277.1,ENST00000261569.7,ENST00000403666.1	chr5	66350231:66350320:66385989:66386059:66391424:66391503,	66385990	66386059	66386023	66386023	Frame_Shift_Del	C	-	p.S266fs
STAD	TCGA-BR-8363-01	ATP6V1C2	ENST00000272238.4,ENST00000381661.3	chr2	10894106:10894192:10904456:10904551:10908844:10908936,	10904457	10904551	10904470	10904471	Frame_Shift_Ins	-	T	p.S99fs
STAD	TCGA-BR-8363-01	DTNBP1	ENST00000510395.1	chr6	15637974:15638035:15651543:15651639:15652317:15652371,	15651544	15651639	15651580	15651580	Frame_Shift_Del	A	-	p.L42fs
STAD	TCGA-BR-8363-01	DTNBP1	ENST00000506844.1,ENST00000338950.5,ENST00000344537.5,ENST00000355917.3,ENST00000513680.1	chr6	15637974:15638035:15651543:15651594:15652317:15652371,	15651544	15651594	15651580	15651580	Frame_Shift_Del	A	-	p.L42fs
STAD	TCGA-BR-8363-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788022	17788023	Frame_Shift_Ins	-	T	p.V1116fs
STAD	TCGA-BR-8363-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680128	6680128	Frame_Shift_Del	G	-	p.R136fs
STAD	TCGA-BR-8363-01	SYAP1	ENST00000380155.3	chrX	16753387:16753468:16754288:16754355:16759838:16759912,	16754289	16754355	16754325	16754325	Frame_Shift_Del	T	-	p.K110fs
STAD	TCGA-BR-8363-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389837	11389837	Frame_Shift_Del	A	-	p.W138fs
STAD	TCGA-BR-8363-01	BIRC3	ENST00000263464.3	chr11	102188293:102188302:102192567:102196093:102196196:102196296,	102192568	102196093	102195491	102195491	Frame_Shift_Del	A	-	p.E84fs
STAD	TCGA-BR-8363-01	CTNND2	ENST00000359640.2,ENST00000511377.1,ENST00000304623.8	chr5	11364968:11365002:11384776:11385341:11397142:11397315,	11384777	11385341	11384949	11384949	Frame_Shift_Del	G	-	p.T336fs
STAD	TCGA-BR-8363-01	CDK11A	ENST00000356937.3	chr1	1635262:1635379:1635477:1635783:1635988:1636024,	1635478	1635783	1635530	1635530	Frame_Shift_Del	G	-	p.P581fs
STAD	TCGA-BR-8363-01	SEZ6L2	ENST00000537485.1,ENST00000350527.3,ENST00000568407.2,ENST00000308713.5,ENST00000346932.5	chr16	29889607:29889746:29891184:29891385:29896906:29897070,	29891185	29891385	29891249	29891249	Frame_Shift_Del	G	-	p.N504fs
STAD	TCGA-BR-8363-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430252	115430252	Frame_Shift_Del	A	-	p.E399fs
STAD	TCGA-BR-8363-01	ZBTB10	ENST00000430430.1	chr8	81397901:81398118:81398483:81400017:81411728:81412617,	81398484	81400017	81399872	81399872	Frame_Shift_Del	A	-	p.Q276fs
STAD	TCGA-BR-8363-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68264112:68264218:68264291:68264457:68264743:68264930,	68264292	68264457	68264442	68264442	Frame_Shift_Del	G	-	p.T639fs
STAD	TCGA-BR-8363-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499815	42499816	Frame_Shift_Ins	-	A	p.L223fs
STAD	TCGA-BR-8363-01	PTCH1	ENST00000375274.2	chr9	98248105:98248156:98268688:98268881:98278750:98278940,98248105:98248156:98268688:98268881:98278904:98278940,	98268689	98268881	98268793	98268793	Frame_Shift_Del	T	-	p.N97fs
STAD	TCGA-BR-8363-01	VAPB	ENST00000520497.1	chr20	56964430:56964573:56993266:56993419:57019132:57019587,56964430:56964573:56993266:56993419:57015962:57016139,	56993267	56993419	56993331	56993331	Frame_Shift_Del	T	-	p.C41fs
STAD	TCGA-BR-8363-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855926	100855927	Frame_Shift_Ins	-	G	p.R297fs
STAD	TCGA-BR-8363-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459056	27459056	Frame_Shift_Del	A	-	p.A389fs
STAD	TCGA-BR-8363-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
STAD	TCGA-BR-8363-01	CEP63	ENST00000354446.3,ENST00000337090.3,ENST00000513612.2,ENST00000508778.1,ENST00000383229.3,ENST00000511574.1,ENST00000332047.5,ENST00000606977.1	chr3	134250690:134250782:134251619:134251742:134255996:134256043,	134251620	134251742	134251733	134251733	Frame_Shift_Del	A	-	p.A144fs
STAD	TCGA-BR-8363-01	UGGT2	ENST00000376747.3	chr13	96511844:96511929:96513041:96513137:96515882:96515968,	96513042	96513137	96513045	96513045	Frame_Shift_Del	A	-	p.L1246fs
STAD	TCGA-BR-8363-01	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185234854:185234950:185236929:185237097:185241858:185241948,	185236930	185237097	185237031	185237032	Frame_Shift_Del	CT	-	p.262_262del
STAD	TCGA-BR-A4CS-01	TOP3B	ENST00000444502.1,ENST00000457179.1,ENST00000357179.5,ENST00000398793.2	chr22	22321974:22322088:22322990:22323147:22324581:22324778,	22322991	22323147	22323012	22323012	Frame_Shift_Del	G	-	p.Y240fs
STAD	TCGA-BR-A4CS-01	CES1	ENST00000422046.2,ENST00000360526.3,ENST00000361503.4	chr16	55850835:55850874:55853446:55853551:55854283:55854391,	55853447	55853551	55853479	55853479	Frame_Shift_Del	C	-	p.E292fs
STAD	TCGA-D7-A4Z0-01	COL11A1	ENST00000358392.2,ENST00000427239.1	chr1	103491076:103491169:103491355:103491508:103496671:103496800,	103491356	103491508	103491428	103491428	Frame_Shift_Del	G	-	p.K288fs
STAD	TCGA-BR-A44T-01	PIGR	ENST00000356495.4	chr1	207107764:207108091:207108830:207109163:207110439:207110544,	207108831	207109163	207109129	207109130	Frame_Shift_Ins	-	T	p.K360fs
STAD	TCGA-CG-4455-01	SERPINB7	ENST00000425392.1,ENST00000336429.2,ENST00000431370.1,ENST00000398019.2,ENST00000447428.1,ENST00000546027.1	chr18	61449588:61449774:61460394:61460511:61463499:61463546,61459626:61459677:61460394:61460511:61463499:61463546,	61460395	61460511	61460422	61460423	Frame_Shift_Ins	-	T	p.V83fs
STAD	TCGA-BR-7851-01	SMC2	ENST00000374793.3,ENST00000303219.8,ENST00000374787.3,ENST00000286398.7	chr9	106876971:106877110:106878480:106878600:106880451:106880656,	106878481	106878600	106878505	106878506	Frame_Shift_Ins	-	G	p.R566fs
STAD	TCGA-BR-7851-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102450870:102450925:102452361:102452440:102456280:102456394,	102452362	102452440	102452431	102452432	Frame_Shift_Ins	-	A	p.S255fs
STAD	TCGA-BR-7851-01	CTNND1	ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000531007.1,ENST00000526772.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57577616:57577695:57578870:57578958:57582865:57582953,57577616:57577695:57578870:57578958:57581782:57581845,	57578871	57578958	57578949	57578950	Frame_Shift_Ins	-	A	p.Q877fs
STAD	TCGA-BR-7851-01	NISCH	ENST00000345716.4,ENST00000479054.1	chr3	52523500:52523694:52524090:52524247:52524720:52524849,	52524091	52524247	52524146	52524146	Frame_Shift_Del	C	-	p.T1171fs
STAD	TCGA-BR-7851-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57128574:57128689:57134235:57134415:57138392:57138469,	57134236	57134415	57134362	57134362	Frame_Shift_Del	T	-	p.N358fs
STAD	TCGA-BR-7851-01	WBP4	ENST00000542082.1,ENST00000379487.3	chr13	41642696:41642873:41645662:41645709:41646917:41646993,	41645663	41645709	41645702	41645703	Frame_Shift_Ins	-	A	p.L160fs
STAD	TCGA-BR-7851-01	SDS	ENST00000257549.4	chr12	113831696:113831821:113834969:113835197:113836319:113836411,	113834970	113835197	113835064	113835064	Frame_Shift_Del	C	-	p.D187fs
STAD	TCGA-BR-7851-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474066	103474067	Frame_Shift_Ins	-	C	p.P558fs
STAD	TCGA-BR-7851-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715357	68715357	Frame_Shift_Del	C	-	p.P48fs
STAD	TCGA-BR-7851-01	OXCT1	ENST00000509987.1,ENST00000196371.5	chr5	41794104:41794180:41794778:41794851:41801123:41801172,	41794779	41794851	41794812	41794812	Frame_Shift_Del	A	-	p.F380fs
STAD	TCGA-BR-7851-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108985856	108985857	Frame_Shift_Ins	-	C	p.F607fs
STAD	TCGA-BR-7851-01	HKDC1	ENST00000395086.2,ENST00000354624.5	chr10	71017082:71017182:71018531:71018715:71020894:71021050,	71018532	71018715	71018587	71018587	Frame_Shift_Del	G	-	p.E696fs
STAD	TCGA-BR-7851-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827882	48827882	Frame_Shift_Del	A	-	p.D386fs
STAD	TCGA-BR-7851-01	REG1A	ENST00000233735.1	chr2	79349164:79349251:79349966:79350078:79350273:79350545,	79349967	79350078	79349995	79349995	Frame_Shift_Del	C	-	p.S117fs
STAD	TCGA-BR-7851-01	UTY	ENST00000331397.4,ENST00000382896.4,ENST00000537580.1,ENST00000362096.4	chrY	15409586:15409728:15410836:15411024:15414756:15414871,	15410837	15411024	15411007	15411007	Frame_Shift_Del	A	-	p.L1233fs
STAD	TCGA-BR-7851-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548598	165548599	Frame_Shift_Del	TG	-	p.75_75del
STAD	TCGA-BR-7851-01	SLC25A17	ENST00000412879.1	chr22	41175081:41175129:41195026:41195087:41215198:41215291,41190517:41190584:41195026:41195087:41215198:41215291,41188535:41188680:41195026:41195087:41215198:41215291,	41195027	41195087	41195058	41195058	Frame_Shift_Del	A	-	p.P29fs
STAD	TCGA-BR-7851-01	EIF5A2	ENST00000295822.2,ENST00000474417.1	chr3	170612080:170612212:170624777:170624882:170625430:170625588,	170624778	170624882	170624844	170624844	Frame_Shift_Del	T	-	p.Y69fs
STAD	TCGA-BR-7851-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270149	66270150	Frame_Shift_Ins	-	C	p.L99fs
STAD	TCGA-BR-7851-01	GRIA4	ENST00000428631.2,ENST00000525187.1,ENST00000393127.2,ENST00000530497.1,ENST00000393125.2,ENST00000525032.1,ENST00000282499.5	chr11	105483002:105483161:105623706:105623946:105732749:105732934,	105623707	105623946	105623740	105623740	Frame_Shift_Del	T	-	p.I94fs
STAD	TCGA-BR-7851-01	MBP	ENST00000581878.1,ENST00000579129.1,ENST00000397860.3,ENST00000580402.1,ENST00000397863.1,ENST00000355994.2,ENST00000490754.1	chr18	74729074:74729224:74778253:74778341:74817166:74817217,	74778254	74778341	74778306	74778307	Frame_Shift_Ins	-	T	p.K29fs
STAD	TCGA-BR-7851-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000467026.1,ENST00000486937.1,ENST00000291688.1	chr21	47660724:47660931:47662715:47662845:47663378:47663636,	47662716	47662845	47662805	47662805	Frame_Shift_Del	A	-	p.K1780fs
STAD	TCGA-BR-7851-01	CRLF3	ENST00000578692.1,ENST00000544695.1,ENST00000324238.6	chr17	29120467:29120690:29123177:29123355:29124328:29124416,	29123178	29123355	29123265	29123265	Frame_Shift_Del	A	-	p.K173fs
STAD	TCGA-BR-7851-01	RFC1	ENST00000381897.1,ENST00000418436.1,ENST00000349703.2	chr4	39322906:39322994:39324959:39325037:39328182:39328260,	39324960	39325037	39324961	39324961	Frame_Shift_Del	T	-	p.K240fs
STAD	TCGA-BR-7851-01	RANBP3	ENST00000340578.6,ENST00000591333.1,ENST00000589886.1,ENST00000439268.2,ENST00000592133.1	chr19	5941809:5941846:5951403:5951607:5957928:5957943,	5951404	5951607	5951588	5951588	Frame_Shift_Del	T	-	p.N33fs
STAD	TCGA-BR-7851-01	CYBRD1	ENST00000409484.1,ENST00000321348.4,ENST00000445146.1	chr2	172379020:172379248:172409855:172410010:172411033:172411117,172398094:172398303:172409855:172410010:172411033:172411117,	172409856	172410010	172410001	172410001	Frame_Shift_Del	T	-	p.I183fs
STAD	TCGA-BR-7851-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47570301:47570439:47571471:47571651:47571805:47571894,	47571472	47571651	47571590	47571591	Frame_Shift_Ins	-	C	p.A173fs
STAD	TCGA-BR-7851-01	SVEP1	ENST00000401783.2,ENST00000297826.5,ENST00000374469.1	chr9	113166606:113166832:113168439:113171231:113173342:113174015,	113168440	113171231	113171074	113171074	Frame_Shift_Del	G	-	p.P2269fs
STAD	TCGA-BR-7851-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128404859:128404969:128410834:128411137:128505576:128505870,	128410835	128411137	128411121	128411122	Frame_Shift_Ins	-	G	p.P393fs
STAD	TCGA-BR-7851-01	SCAF8	ENST00000367178.3,ENST00000367186.4,ENST00000417268.1	chr6	155143409:155143543:155145367:155145512:155148305:155148374,	155145368	155145512	155145472	155145472	Frame_Shift_Del	T	-	p.P677fs
STAD	TCGA-BR-7851-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539849	120539850	Frame_Shift_Ins	-	A	p.F174fs
STAD	TCGA-BR-7851-01	CENPJ	ENST00000381884.4	chr13	25459743:25459808:25463453:25463538:25466780:25466993,	25463454	25463538	25463471	25463471	Frame_Shift_Del	T	-	p.N1095fs
STAD	TCGA-BR-7851-01	POSTN	ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4	chr13	38166236:38166301:38171320:38171419:38172744:38172863,	38171321	38171419	38171342	38171342	Frame_Shift_Del	T	-	p.K66fs
STAD	TCGA-BR-7851-01	ST6GALNAC5	ENST00000477717.1	chr1	77461141:77461205:77509888:77510298:77515942:77516001,77334181:77334427:77509888:77510298:77515942:77516001,	77509889	77510298	77510209	77510209	Frame_Shift_Del	G	-	p.Q194fs
STAD	TCGA-BR-7851-01	SLC13A3	ENST00000290317.5,ENST00000495082.1,ENST00000472148.1,ENST00000279027.4,ENST00000435032.1,ENST00000396360.1,ENST00000413164.2	chr20	45188632:45188837:45192052:45192190:45194867:45195029,	45192053	45192190	45192098	45192098	Frame_Shift_Del	G	-	p.N530fs
STAD	TCGA-BR-7851-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466682	109466683	Frame_Shift_Del	CA	-	p.554_554del
STAD	TCGA-BR-7851-01	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41465647:41465801:41496121:41496255:41505780:41505936,	41496122	41496255	41496183	41496183	Frame_Shift_Del	G	-	p.P1212fs
STAD	TCGA-BR-7851-01	CD6	ENST00000346437.4,ENST00000344931.5,ENST00000352009.5,ENST00000452451.2,ENST00000313421.7,ENST00000344028.5	chr11	60776005:60776317:60777043:60777346:60778541:60778607,	60777044	60777346	60777126	60777127	Frame_Shift_Ins	-	GT	p.T288fs
STAD	TCGA-BR-7851-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349640	89349641	Frame_Shift_Ins	-	T	p.D1104fs
STAD	TCGA-BR-7851-01	MEF2D	ENST00000493077.1,ENST00000464356.2,ENST00000360595.3,ENST00000368240.2,ENST00000348159.4,ENST00000340875.5,ENST00000353795.3	chr1	156446803:156446994:156449081:156449138:156449377:156449572,	156449082	156449138	156449123	156449123	Frame_Shift_Del	C	-	p.G208fs
STAD	TCGA-BR-7851-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372849	65372850	Frame_Shift_Ins	-	TC	p.E823fs
STAD	TCGA-CD-A4MI-01	TNIP1	ENST00000315050.7,ENST00000518977.1,ENST00000389378.2,ENST00000522574.1,ENST00000520931.1,ENST00000522226.1,ENST00000523338.1,ENST00000521591.1	chr5	150411847:150411944:150413168:150413360:150414562:150414628,	150413169	150413360	150413227	150413227	Frame_Shift_Del	G	-	p.P574fs
STAD	TCGA-CD-A4MI-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212518	185212518	Frame_Shift_Del	A	-	p.F156fs
STAD	TCGA-CD-A4MI-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832910	24832910	Frame_Shift_Del	A	-	p.K1570fs
STAD	TCGA-CD-A4MI-01	DMKN	ENST00000402589.2,ENST00000498211.1,ENST00000467637.1,ENST00000419602.1,ENST00000480502.1,ENST00000601650.1,ENST00000462126.1,ENST00000464709.2,ENST00000408915.2,ENST00000483855.1,ENST00000414866.2,ENST00000602781.1,ENST00000429837.1,ENST00000462721.1,ENST00000436012.1,ENST00000493979.1,ENST00000460327.1,ENST00000339686.3,ENST00000597212.1,ENST00000490622.1,ENST00000467532.1,ENST00000469960.1,ENST00000460051.1,ENST00000492341.2,ENST00000463292.1,ENST00000488762.1,ENST00000434389.1,ENST00000488542.2,ENST00000443640.1,ENST00000472252.2	chr19	35989621:35989665:35989775:35989799:35990859:35990931,	35989776	35989799	35989795	35989795	Frame_Shift_Del	C	-	p.G455fs
STAD	TCGA-CD-A4MI-01	NMD3	ENST00000473909.1,ENST00000472947.1,ENST00000476237.1,ENST00000351193.2,ENST00000460503.1,ENST00000463518.1,ENST00000468606.1,ENST00000493066.1,ENST00000460469.1	chr3	160939781:160939845:160942717:160942852:160945034:160945131,	160942718	160942852	160942803	160942804	Frame_Shift_Ins	-	A	p.Q44fs
STAD	TCGA-CD-A4MI-01	SLC12A9	ENST00000467972.1,ENST00000275729.3,ENST00000487651.1,ENST00000540482.1,ENST00000415287.1,ENST00000354161.3,ENST00000475687.1,ENST00000428758.1,ENST00000482184.1	chr7	100459141:100459206:100459358:100459533:100460302:100460449,	100459359	100459533	100459489	100459490	Frame_Shift_Ins	-	G	p.K556fs
STAD	TCGA-CD-A4MI-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56762882:56763066:56765850:56766050:56768509:56768704,	56765851	56766050	56765965	56765965	Frame_Shift_Del	A	-	p.E751fs
STAD	TCGA-CD-A4MI-01	TMEM175	ENST00000514453.1,ENST00000515876.1,ENST00000513952.1,ENST00000510493.1,ENST00000508204.1,ENST00000264771.4,ENST00000452360.2,ENST00000515492.1,ENST00000515740.1,ENST00000438836.2,ENST00000504180.1	chr4	944994:945046:946154:946238:946977:947091,945469:945505:946154:946238:946977:947091,	946155	946238	946205	946206	Frame_Shift_Ins	-	TG	p.F143fs
STAD	TCGA-CD-A4MI-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510826	169510827	Frame_Shift_Ins	-	G	p.T1168fs
STAD	TCGA-CD-A4MI-01	FBLIM1	ENST00000441801.2,ENST00000375771.1,ENST00000375766.3	chr1	16091458:16091728:16093870:16094058:16095022:16095125,	16093871	16094058	16093879	16093879	Frame_Shift_Del	C	-	p.P86fs
STAD	TCGA-CD-A4MI-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142241569:142241683:142242834:142243041:142253921:142254047,	142242835	142243041	142242920	142242921	Frame_Shift_Ins	-	C	p.E1356fs
STAD	TCGA-CD-A4MI-01	KCNT2	ENST00000610076.1	chr1	196309618:196309700:196311208:196311379:196342269:196342378,	196311209	196311379	196311261	196311262	Frame_Shift_Ins	-	A	p.A501fs
STAD	TCGA-CD-A4MI-01	KCNT2	ENST00000294725.9,ENST00000367433.5,ENST00000451324.2,ENST00000498426.1	chr1	196309618:196309700:196311208:196311358:196342269:196342378,	196311209	196311358	196311261	196311262	Frame_Shift_Ins	-	A	p.A501fs
STAD	TCGA-CD-A4MI-01	CPVL	ENST00000455893.2	chr7	29035252:29035498:29070192:29070375:29103676:29103850,29035252:29035498:29070192:29070375:29111388:29111461,	29070193	29070375	29070262	29070262	Frame_Shift_Del	T	-	p.V418fs
STAD	TCGA-CD-A4MI-01	COL28A1	ENST00000399429.3,ENST00000444268.1	chr7	7493070:7493139:7495674:7495743:7514231:7514300,	7495675	7495743	7495740	7495740	Frame_Shift_Del	C	-	p.D436fs
STAD	TCGA-CD-A4MI-01	GANAB	ENST00000529737.1	chr11	62406830:62406939:62407102:62407203:62414033:62414074,	62407103	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
STAD	TCGA-CD-A4MI-01	GANAB	ENST00000346178.4,ENST00000356638.3	chr11	62406830:62406939:62407098:62407203:62414033:62414074,	62407099	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
STAD	TCGA-CD-A4MI-01	ZBTB48	ENST00000435905.1	chr1	6640147:6640196:6640600:6641359:6642117:6642305,6640076:6640130:6640600:6641359:6642117:6642305,	6640601	6641359	6640765	6640765	Frame_Shift_Del	G	-	p.V32fs
STAD	TCGA-CD-A4MI-01	SLC35F3	ENST00000366618.3,ENST00000366617.3	chr1	234367162:234367487:234444846:234445066:234452347:234452473,	234444847	234445066	234444860	234444860	Frame_Shift_Del	T	-	p.R207fs
STAD	TCGA-CD-A4MI-01	CASP4	ENST00000529183.1	chr11	104820387:104820504:104825473:104825728:104839245:104839274,	104825474	104825728	104825505	104825505	Frame_Shift_Del	A	-	p.N78fs
STAD	TCGA-CD-A4MI-01	SKIL	ENST00000259119.4	chr3	170075521:170075551:170077486:170079217:170099031:170099129,	170077487	170079217	170078165	170078165	Frame_Shift_Del	A	-	p.T15fs
STAD	TCGA-CD-A4MI-01	SUGP2	ENST00000601879.1,ENST00000337018.6,ENST00000452918.2,ENST00000456085.2,ENST00000598240.1,ENST00000600377.1	chr19	19112421:19112483:19114976:19115455:19119125:19119237,	19114977	19115455	19115314	19115314	Frame_Shift_Del	G	-	p.V865fs
STAD	TCGA-CD-A4MI-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944739:139944990:139945353:139945581:139945662:139945822,	139945354	139945581	139945517	139945517	Frame_Shift_Del	C	-	p.G204fs
STAD	TCGA-CD-A4MI-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211018374	211018375	Frame_Shift_Ins	-	T	p.N311fs
STAD	TCGA-CD-A4MI-01	ACSM3	ENST00000440284.2,ENST00000562251.1,ENST00000289416.5,ENST00000563914.1,ENST00000450120.2	chr16	20793029:20793109:20796305:20796429:20797399:20797474,	20796306	20796429	20796371	20796371	Frame_Shift_Del	A	-	p.E362fs
STAD	TCGA-CD-A4MI-01	SUN2	ENST00000406622.1,ENST00000430185.1,ENST00000438058.1,ENST00000405018.1,ENST00000216064.4,ENST00000411587.2,ENST00000405510.1	chr22	39144717:39144788:39145770:39145864:39146229:39146319,	39145771	39145864	39145777	39145777	Frame_Shift_Del	A	-	p.L224fs
STAD	TCGA-CD-A4MI-01	EZH1	ENST00000586089.1,ENST00000585893.1	chr17	40872455:40872467:40874812:40874933:40876322:40876442,40872455:40872467:40874812:40874933:40879652:40879781,	40874813	40874933	40874914	40874914	Frame_Shift_Del	A	-	p.L129fs
STAD	TCGA-CD-A4MI-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551297	Frame_Shift_Del	AA	-	p.907_907del
STAD	TCGA-CD-A4MI-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551297	Frame_Shift_Del	AA	-	p.907_907del
STAD	TCGA-CD-A4MI-01	DENND6A	ENST00000311128.5	chr3	57616651:57616705:57618991:57619081:57620284:57620349,	57618992	57619081	57619023	57619023	Frame_Shift_Del	A	-	p.L441fs
STAD	TCGA-CD-A4MI-01	C2orf42	ENST00000264434.2,ENST00000420306.1	chr2	70396688:70396793:70402804:70402909:70406663:70406774,	70402805	70402909	70402810	70402811	Frame_Shift_Ins	-	T	p.R345fs
STAD	TCGA-CD-A4MI-01	LARP1B	ENST00000326639.6,ENST00000503725.1,ENST00000264584.5,ENST00000507259.1,ENST00000354456.3,ENST00000506199.1	chr4	129121748:129121820:129127582:129127692:129128410:129128538,	129127583	129127692	129127626	129127627	Frame_Shift_Ins	-	A	p.E785fs
STAD	TCGA-CD-A4MI-01	FBLN7	ENST00000272559.4	chr2	112939315:112939453:112940367:112940505:112942777:112942916,112933290:112933416:112940367:112940505:112942777:112942916,112939459:112939595:112940367:112940505:112942777:112942916,	112940368	112940505	112940399	112940399	Frame_Shift_Del	G	-	p.E234fs
STAD	TCGA-CD-A4MI-01	SLC16A10	ENST00000368851.5	chr6	111493897:111494042:111498414:111498868:111527794:111527938,	111498415	111498868	111498763	111498763	Frame_Shift_Del	A	-	p.P279fs
STAD	TCGA-CD-A4MI-01	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367351	105367351	Frame_Shift_Del	A	-	p.L425fs
STAD	TCGA-CD-A4MI-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823103	155823103	Frame_Shift_Del	A	-	p.S157X
STAD	TCGA-CD-A4MI-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61834828	61834828	Frame_Shift_Del	G	-	p.P155fs
STAD	TCGA-CD-A4MI-01	SLC13A4	ENST00000471405.1,ENST00000354042.4	chr7	135365988:135366448:135368871:135369009:135370269:135370431,	135368872	135369009	135368918	135368918	Frame_Shift_Del	G	-	p.P566fs
STAD	TCGA-CD-A4MI-01	LYPLA2	ENST00000495365.1,ENST00000374514.3,ENST00000374502.3,ENST00000374503.3,ENST00000421070.1,ENST00000400061.1,ENST00000374505.2	chr1	24119146:24119250:24119497:24119529:24119640:24119706,	24119498	24119529	24119502	24119502	Frame_Shift_Del	T	-	p.I28fs
STAD	TCGA-CD-A4MI-01	UPF2	ENST00000397053.2,ENST00000357604.5	chr10	12056022:12056183:12070743:12071523:12077057:12077440,	12070744	12071523	12071203	12071204	Frame_Shift_Ins	-	AG	p.F229fs
STAD	TCGA-CD-A4MI-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56170909	56170910	Frame_Shift_Del	GA	-	p.579_579del
STAD	TCGA-CD-A4MI-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30862364:30862448:30863180:30863291:30864397:30864642,30862364:30862448:30863180:30863291:30864507:30864642,	30863181	30863291	30863251	30863251	Frame_Shift_Del	C	-	p.G528fs
STAD	TCGA-CD-A4MI-01	KIF2A	ENST00000381103.2,ENST00000407818.3,ENST00000401507.3,ENST00000506857.1	chr5	61673487:61673589:61676944:61677080:61681310:61681455,	61676945	61677080	61677078	61677078	Frame_Shift_Del	G	-	p.R716fs
STAD	TCGA-CD-A4MI-01	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745623	39745623	Frame_Shift_Del	T	-	p.D544fs
STAD	TCGA-CD-A4MI-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16043433:16043656:16101672:16101849:16103632:16103758,	16101673	16101849	16101774	16101774	Frame_Shift_Del	C	-	p.F50fs
STAD	TCGA-CD-A4MI-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672365	151672365	Frame_Shift_Del	C	-	p.E946fs
STAD	TCGA-CD-A4MI-01	TUBGCP4	ENST00000561691.1,ENST00000260383.7,ENST00000564079.1,ENST00000399460.3	chr15	43672281:43672361:43675500:43675702:43677988:43678114,	43675501	43675702	43675661	43675661	Frame_Shift_Del	G	-	p.I227fs
STAD	TCGA-CD-A4MI-01	WDR59	ENST00000536050.1,ENST00000262144.6	chr16	74972148:74972164:74976635:74976724:74982416:74982454,	74976636	74976724	74976691	74976691	Frame_Shift_Del	T	-	p.N160fs
STAD	TCGA-CD-A4MI-01	OPALIN	ENST00000393870.2	chr10	98109463:98109583:98115011:98115047:98118650:98118738,	98115012	98115047	98115041	98115041	Frame_Shift_Del	A	-	p.S4fs
STAD	TCGA-CD-A4MI-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160293220:160293320:160295332:160295442:160302237:160302347,	160295333	160295442	160295427	160295427	Frame_Shift_Del	T	-	p.N171fs
STAD	TCGA-CD-A4MI-01	PIGG	ENST00000310340.5,ENST00000383028.4,ENST00000296306.7,ENST00000453061.2,ENST00000504346.1	chr4	520827:521019:524224:524534:527606:527770,	524225	524534	524250	524251	Frame_Shift_Del	TA	-	p.762_763del
STAD	TCGA-CD-A4MI-01	SREBF2	ENST00000361204.4,ENST00000424354.1	chr22	42280845:42281015:42289120:42289289:42290823:42290941,	42289121	42289289	42289201	42289201	Frame_Shift_Del	C	-	p.H763fs
STAD	TCGA-CD-A4MI-01	NOTCH3	ENST00000601011.1,ENST00000263388.2	chr19	15290174:15290307:15290882:15291067:15291491:15291639,	15290883	15291067	15290896	15290896	Frame_Shift_Del	C	-	p.G1105fs
STAD	TCGA-CD-A4MI-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
STAD	TCGA-CG-4306-01	FUBP3	ENST00000319725.9	chr9	133501750:133501892:133506014:133506175:133506943:133507017,	133506015	133506175	133506076	133506076	Frame_Shift_Del	C	-	p.N393fs
STAD	TCGA-CG-4306-01	COL6A3	ENST00000353578.4,ENST00000295550.4,ENST00000409809.1,ENST00000491769.1,ENST00000472056.1,ENST00000346358.4,ENST00000347401.3	chr2	238234215:238234367:238242092:238242191:238243268:238243429,	238242093	238242191	238242176	238242176	Frame_Shift_Del	G	-	p.P3082fs
STAD	TCGA-CG-4306-01	DHX30	ENST00000445061.1	chr3	47852146:47852201:47859511:47859607:47868836:47868967,	47859512	47859607	47859553	47859553	Frame_Shift_Del	C	-	p.P23fs
STAD	TCGA-CG-4306-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101438	27101438	Frame_Shift_Del	C	-	p.Q1573fs
STAD	TCGA-CG-4306-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.W386fs
STAD	TCGA-CG-4306-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1856fs
STAD	TCGA-CG-4306-01	ARHGEF25	ENST00000333972.7	chr12	58005217:58005774:58006712:58006927:58007046:58007142,58004352:58004467:58006712:58006927:58007046:58007142,	58006713	58006927	58006825	58006825	Frame_Shift_Del	C	-	p.G109fs
STAD	TCGA-CG-4306-01	UNC5A	ENST00000261961.3,ENST00000329542.4	chr5	176304894:176305128:176305244:176305394:176305475:176305640,	176305245	176305394	176305271	176305271	Frame_Shift_Del	G	-	p.L632fs
STAD	TCGA-CG-4306-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904506	5904507	Frame_Shift_Ins	-	A	p.E572fs
STAD	TCGA-CG-4306-01	ERAP2	ENST00000437043.3,ENST00000379904.4,ENST00000515095.1,ENST00000510373.1,ENST00000513084.1	chr5	96230949:96231063:96232076:96232208:96232435:96232566,	96232077	96232208	96232084	96232085	Frame_Shift_Ins	-	T	p.Y416fs
STAD	TCGA-CG-4306-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151860	31151860	Frame_Shift_Del	G	-	p.P707fs
STAD	TCGA-CG-4306-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735449	95735449	Frame_Shift_Del	A	-	p.L878fs
STAD	TCGA-CG-4306-01	DEDD2	ENST00000596251.1,ENST00000595337.1,ENST00000593804.1	chr19	42703944:42703981:42713851:42713992:42719284:42719404,	42713852	42713992	42713983	42713983	Frame_Shift_Del	G	-	p.P153fs
STAD	TCGA-CG-4306-01	SYT15	ENST00000374328.3,ENST00000503753.1,ENST00000374325.3	chr10	46961933:46962112:46963839:46964019:46965001:46965122,46959943:46960018:46963839:46964019:46965001:46965122,	46963840	46964019	46964014	46964015	Frame_Shift_Del	AC	-	p.317_317del
STAD	TCGA-CG-4306-01	PPP1R9A	ENST00000433360.1,ENST00000289495.5	chr7	94915517:94915637:94917847:94918030:94919402:94919667,	94917848	94918030	94917981	94917981	Frame_Shift_Del	A	-	p.Q1288fs
STAD	TCGA-CG-4306-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618999	618999	Frame_Shift_Del	C	-	p.P521fs
STAD	TCGA-CG-4306-01	HSPG2	ENST00000374695.3	chr1	22155327:22155572:22155875:22156097:22156485:22156584,	22155876	22156097	22155955	22155955	Frame_Shift_Del	C	-	p.K3972fs
STAD	TCGA-CG-4306-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000410054.1	chr2	136402948:136403097:136409299:136409602:136418839:136418963,	136409300	136409602	136409442	136409442	Frame_Shift_Del	C	-	p.A588fs
STAD	TCGA-CG-4306-01	R3HDM1	ENST00000264160.4,ENST00000329971.3	chr2	136402948:136403097:136409302:136409602:136418839:136418963,	136409303	136409602	136409442	136409442	Frame_Shift_Del	C	-	p.A588fs
STAD	TCGA-CG-4306-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5462052	5462052	Frame_Shift_Del	T	-	p.K655fs
STAD	TCGA-CG-4306-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150923356	150923357	Frame_Shift_Ins	-	T	p.K2444fs
STAD	TCGA-CG-4306-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155661	106155661	Frame_Shift_Del	A	-	p.G187fs
STAD	TCGA-CG-4306-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183201786:183201992:183203501:183203581:183204709:183204865,	183203502	183203581	183203527	183203528	Frame_Shift_Ins	-	G	p.V749fs
STAD	TCGA-CG-4306-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797396	75797397	Frame_Shift_Ins	-	G	p.P3026fs
STAD	TCGA-CG-4306-01	METTL6	ENST00000383790.3,ENST00000443029.1,ENST00000450816.2	chr3	15452842:15452944:15455527:15455669:15457004:15457090,15452842:15452944:15455527:15455669:15456236:15456421,15452842:15452944:15455527:15455669:15457278:15457367,	15455528	15455669	15455535	15455535	Frame_Shift_Del	A	-	p.T223fs
STAD	TCGA-CG-4306-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645974	215645975	Frame_Shift_Ins	-	T	p.K208fs
STAD	TCGA-CG-4306-01	NCS1	ENST00000458469.1,ENST00000372398.3	chr9	132963236:132963261:132980110:132980249:132982003:132982082,	132980111	132980249	132980141	132980142	Frame_Shift_Ins	-	G	p.S40fs
STAD	TCGA-CG-4306-01	KIAA1217	ENST00000458595.1	chr10	24825702:24825822:24833909:24834032:24834755:24836627,	24833910	24834032	24833919	24833919	Frame_Shift_Del	G	-	p.S1740fs
STAD	TCGA-CG-4306-01	FBXL18	ENST00000415009.1,ENST00000382368.3,ENST00000453700.3	chr7	5530861:5531080:5540118:5541662:5545042:5545261,	5540119	5541662	5541183	5541183	Frame_Shift_Del	G	-	p.G240fs
STAD	TCGA-CG-4306-01	RARA	ENST00000254066.5	chr17	38474536:38474700:38487108:38487648:38508161:38508322,38474536:38474700:38487108:38487648:38504567:38504588,38465445:38465538:38487108:38487648:38504567:38504588,	38487109	38487648	38487554	38487554	Frame_Shift_Del	C	-	p.F28fs
STAD	TCGA-CG-4306-01	ATP2B1	ENST00000359142.3,ENST00000261173.2,ENST00000428670.3,ENST00000348959.3	chr12	90028554:90028680:90028773:90029028:90035934:90036132,	90028774	90029028	90028897	90028898	Frame_Shift_Ins	-	T	p.Q180fs
STAD	TCGA-CG-4306-01	NEK7	ENST00000367385.4,ENST00000538004.1,ENST00000391974.3	chr1	198201682:198201767:198222169:198222310:198231704:198231753,	198222170	198222310	198222298	198222298	Frame_Shift_Del	A	-	p.L62X
STAD	TCGA-CG-4306-01	AP1G2	ENST00000556743.1,ENST00000557619.1,ENST00000556943.1,ENST00000460049.2	chr14	24035547:24035628:24036319:24036528:24036947:24036988,	24036320	24036528	24036397	24036397	Frame_Shift_Del	C	-	p.D43fs
STAD	TCGA-CG-4306-01	PPFIA1	ENST00000526262.1,ENST00000389547.3,ENST00000532443.1,ENST00000530798.1,ENST00000532504.1,ENST00000253925.7	chr11	70181718:70181800:70183470:70183533:70184479:70184540,	70183471	70183533	70183500	70183500	Frame_Shift_Del	A	-	p.A486fs
STAD	TCGA-CG-4306-01	SPARCL1	ENST00000541496.1	chr4	88416164:88416279:88420672:88420737:88450196:88450244,88416132:88416295:88420672:88420737:88450196:88450244,	88420673	88420737	88420707	88420707	Frame_Shift_Del	A	-	p.F7fs
STAD	TCGA-CG-4306-01	EPHA6	ENST00000389672.5,ENST00000502694.1,ENST00000514100.1,ENST00000508345.1,ENST00000442602.2	chr3	97251201:97251387:97311455:97311581:97329636:97329668,	97311456	97311581	97311563	97311563	Frame_Shift_Del	C	-	p.L831fs
STAD	TCGA-CG-4306-01	SLC25A17	ENST00000412879.1	chr22	41175081:41175129:41195026:41195087:41215198:41215291,41190517:41190584:41195026:41195087:41215198:41215291,41188535:41188680:41195026:41195087:41215198:41215291,	41195027	41195087	41195058	41195058	Frame_Shift_Del	A	-	p.P29fs
STAD	TCGA-CG-4306-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89022381:89022471:89028335:89028418:89034454:89034699,	89028336	89028418	89028360	89028360	Frame_Shift_Del	T	-	p.N418fs
STAD	TCGA-CG-4306-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647321	Frame_Shift_Del	AA	-	p.813_814del
STAD	TCGA-CG-4306-01	ZC4H2	ENST00000337990.2,ENST00000374839.3,ENST00000476032.1,ENST00000545618.1,ENST00000488831.1	chrX	64137737:64137776:64138921:64139084:64139960:64140007,	64138922	64139084	64139033	64139033	Frame_Shift_Del	G	-	p.I151fs
STAD	TCGA-CG-4306-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044069	108044069	Frame_Shift_Del	T	-	p.S548fs
STAD	TCGA-CG-4306-01	MARK2	ENST00000361128.5,ENST00000413835.2,ENST00000513765.2,ENST00000377809.4,ENST00000402010.2,ENST00000315032.8	chr11	63669669:63669802:63670072:63670254:63670532:63670604,	63670073	63670254	63670244	63670244	Frame_Shift_Del	C	-	p.T469fs
STAD	TCGA-CG-4306-01	MARK2	ENST00000377810.3,ENST00000408948.3,ENST00000350490.7,ENST00000502399.3,ENST00000425897.2,ENST00000508192.1,ENST00000509502.2	chr11	63669669:63669802:63670075:63670254:63670532:63670604,	63670076	63670254	63670244	63670244	Frame_Shift_Del	C	-	p.T469fs
STAD	TCGA-CG-4306-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639588	47639588	Frame_Shift_Del	A	-	p.R227fs
STAD	TCGA-CG-4306-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618807	618807	Frame_Shift_Del	G	-	p.S585fs
STAD	TCGA-CG-4306-01	BNC1	ENST00000345382.2,ENST00000569704.1	chr15	83926095:83926878:83931702:83933567:83935587:83935823,	83931703	83933567	83932566	83932566	Frame_Shift_Del	A	-	p.P480fs
STAD	TCGA-CG-4306-01	AKAP13	ENST00000394518.2,ENST00000560579.1,ENST00000361243.2,ENST00000394510.2	chr15	86278222:86278381:86278790:86278861:86279320:86279365,	86278791	86278861	86278855	86278855	Frame_Shift_Del	A	-	p.L2506fs
STAD	TCGA-HU-A4GP-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095414	143095415	Frame_Shift_Ins	-	T	p.K154fs
STAD	TCGA-HU-A4GP-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190282	72190283	Frame_Shift_Del	TC	-	p.1521_1521del
STAD	TCGA-HU-A4GP-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17617221:17617374:17622441:17622564:17623623:17623772,	17622442	17622564	17622545	17622546	Frame_Shift_Ins	-	GGTC	p.P261fs
STAD	TCGA-HU-A4GP-01	DAPK1	ENST00000469640.2,ENST00000408954.3,ENST00000358077.5,ENST00000472284.1,ENST00000489291.1	chr9	90301465:90301654:90311921:90312119:90313570:90313709,	90311922	90312119	90312111	90312111	Frame_Shift_Del	A	-	p.E868fs
STAD	TCGA-CG-5722-01	BIRC3	ENST00000263464.3	chr11	102188293:102188302:102192567:102196093:102196196:102196296,	102192568	102196093	102195974	102195975	Frame_Shift_Del	AC	-	p.245_245del
STAD	TCGA-HU-A4G9-01	COL18A1	ENST00000359759.4,ENST00000459895.1,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46915271:46915346:46916413:46916482:46916963:46917006,	46916414	46916482	46916425	46916425	Frame_Shift_Del	C	-	p.G1020fs
STAD	TCGA-HU-A4G9-01	UPF3B	ENST00000345865.2,ENST00000276201.2,ENST00000478840.1	chrX	118975697:118975741:118977153:118977264:118979160:118979217,	118977154	118977264	118977168	118977168	Frame_Shift_Del	T	-	p.N189fs
STAD	TCGA-HU-A4G9-01	SALL2	ENST00000450879.2,ENST00000546363.1	chr14	21989672:21990378:21990966:21993065:21993470:21993591,	21990967	21993065	21992285	21992285	Frame_Shift_Del	T	-	p.N526fs
STAD	TCGA-HU-A4G9-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L356fs
STAD	TCGA-HU-A4G9-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899919	163899920	Frame_Shift_Ins	-	A	p.D131fs
STAD	TCGA-HU-A4G9-01	ULK1	ENST00000541761.1,ENST00000321867.4	chr12	132401497:132401607:132401955:132402099:132403041:132403226,	132401956	132402099	132402065	132402066	Frame_Shift_Ins	-	C	p.T764fs
STAD	TCGA-HU-A4G9-01	RPRD2	ENST00000401000.4,ENST00000539519.1,ENST00000492220.1,ENST00000369068.4	chr1	150416726:150416853:150418701:150418877:150429763:150430046,	150418702	150418877	150418791	150418791	Frame_Shift_Del	A	-	p.V261fs
STAD	TCGA-HU-A4G9-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000380432.2,ENST00000602925.1	chr9	19316618:19316837:19324359:19324505:19325936:19325972,	19324360	19324505	19324482	19324482	Frame_Shift_Del	T	-	p.A643fs
STAD	TCGA-HU-A4G9-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1144fs
STAD	TCGA-HU-A4G9-01	GABBR1	ENST00000377012.4,ENST00000355973.3,ENST00000377034.4,ENST00000377016.4,ENST00000473774.1,ENST00000491829.1	chr6	29576377:29576510:29577005:29577156:29578700:29578778,	29577006	29577156	29577144	29577144	Frame_Shift_Del	G	-	p.P574fs
STAD	TCGA-HU-A4G9-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525559	75525560	Frame_Shift_Ins	-	C	p.V456fs
STAD	TCGA-HU-A4G9-01	GPSM3	ENST00000375040.3,ENST00000375043.3	chr6	32159485:32159647:32159924:32160027:32160248:32160293,32159485:32159685:32159924:32160027:32160248:32160293,	32159925	32160027	32160020	32160020	Frame_Shift_Del	G	-	p.P17fs
STAD	TCGA-HU-A4G9-01	TAF6	ENST00000453269.2,ENST00000421980.1,ENST00000418432.2,ENST00000472509.1,ENST00000344095.4,ENST00000452041.1,ENST00000437822.2	chr7	99705548:99705746:99705989:99706163:99707570:99707660,	99705990	99706163	99706154	99706155	Frame_Shift_Del	CA	-	p.469_469del
STAD	TCGA-HU-A4G9-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218255	134218255	Frame_Shift_Del	C	-	p.S84fs
STAD	TCGA-HU-A4G9-01	L3MBTL2	ENST00000481902.1	chr22	41605699:41605937:41609854:41610030:41612142:41612266,	41609855	41610030	41609902	41609903	Frame_Shift_Del	TG	-	p.89_90del
STAD	TCGA-HU-A4G9-01	L3MBTL2	ENST00000479978.1,ENST00000450939.1,ENST00000452106.1,ENST00000216237.5,ENST00000466589.1,ENST00000489136.1	chr22	41605699:41605937:41609896:41610030:41612142:41612266,	41609897	41610030	41609902	41609903	Frame_Shift_Del	TG	-	p.89_90del
STAD	TCGA-HU-A4G9-01	LRRC31	ENST00000264676.5	chr3	169578348:169578516:169579457:169579601:169587420:169587621,169574492:169574660:169579457:169579601:169587420:169587621,	169579458	169579601	169579523	169579523	Frame_Shift_Del	T	-	p.M85fs
STAD	TCGA-HU-A4G9-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
STAD	TCGA-HU-A4G9-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573659	121573659	Frame_Shift_Del	A	-	p.V109fs
STAD	TCGA-HU-A4G9-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048716	42048716	Frame_Shift_Del	G	-	p.R585fs
STAD	TCGA-HU-A4G9-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488373	70488373	Frame_Shift_Del	C	-	p.S114fs
STAD	TCGA-HU-A4G9-01	SEMA4B	ENST00000559074.1,ENST00000332496.6,ENST00000411539.2,ENST00000560089.1,ENST00000558065.1,ENST00000379122.3	chr15	90764981:90764997:90766790:90766972:90767069:90767154,	90766791	90766972	90766838	90766841	Frame_Shift_Del	CCTC	-	p.303_304del
STAD	TCGA-HU-A4G9-01	ASB2	ENST00000555507.1,ENST00000555019.1,ENST00000315988.4	chr14	94404064:94404197:94405453:94406018:94413694:94413866,	94405454	94406018	94405856	94405857	Frame_Shift_Del	GC	-	p.405_406del
STAD	TCGA-HU-A4G9-01	BRPF1	ENST00000457855.1,ENST00000383829.2,ENST00000302054.3,ENST00000424362.1	chr3	9785264:9785585:9785907:9786192:9786691:9786839,	9785908	9786192	9786078	9786078	Frame_Shift_Del	C	-	p.G935fs
STAD	TCGA-HU-A4G9-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17402081	17402081	Frame_Shift_Del	T	-	p.D206fs
STAD	TCGA-HU-A4G9-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37114280:37114373:37116514:37116607,37107714:37107816:37114280:37114373:37116514:37116607,	37114281	37114373	37114286	37114286	Frame_Shift_Del	T	-	p.I487fs
STAD	TCGA-HU-A4G9-01	ENDOU	ENST00000229003.3,ENST00000422538.3,ENST00000545824.2	chr12	48105415:48105558:48106298:48106405:48107057:48107171,	48106299	48106405	48106392	48106392	Frame_Shift_Del	T	-	p.G294fs
STAD	TCGA-HU-A4G9-01	SP100	ENST00000409824.1,ENST00000264052.5,ENST00000466710.1,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1	chr2	231314886:231314970:231325976:231326129:231327149:231327224,	231325977	231326129	231326044	231326044	Frame_Shift_Del	A	-	p.I296fs
STAD	TCGA-HU-A4G9-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274959	114274959	Frame_Shift_Del	A	-	p.L1728fs
STAD	TCGA-HU-A4G9-01	DAO	ENST00000547166.1,ENST00000228476.3	chr12	109281225:109281340:109283244:109283321:109283983:109284049,	109283245	109283321	109283287	109283288	Frame_Shift_Ins	-	C	p.T118fs
STAD	TCGA-HU-A4G9-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634230	84634231	Frame_Shift_Ins	-	A	p.Q245fs
STAD	TCGA-HU-A4G9-01	PVR	ENST00000406449.4,ENST00000425690.3,ENST00000403059.4,ENST00000344956.4,ENST00000187830.2	chr19	45150571:45150842:45153080:45153377:45157168:45157286,	45153081	45153377	45153247	45153248	Frame_Shift_Del	CA	-	p.198_198del
STAD	TCGA-HU-A4G9-01	PSMG2	ENST00000317615.6,ENST00000585331.2,ENST00000586445.1,ENST00000590217.1	chr18	12718515:12718634:12720508:12720682:12724497:12724519,	12720509	12720682	12720544	12720544	Frame_Shift_Del	A	-	p.Q148fs
STAD	TCGA-HU-A4G9-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30734923	30734923	Frame_Shift_Del	C	-	p.A1393fs
STAD	TCGA-HU-A4G9-01	KIF5B	ENST00000302418.4	chr10	32306979:32307084:32307243:32307315:32307429:32307490,	32307244	32307315	32307245	32307245	Frame_Shift_Del	T	-	p.K813fs
STAD	TCGA-HU-A4G9-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39066558:39066601:39068557:39068688:39068783:39068844,	39068558	39068688	39068674	39068675	Frame_Shift_Ins	-	G	p.P4763fs
STAD	TCGA-HU-A4G9-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729754	23729754	Frame_Shift_Del	C	-	p.V81fs
STAD	TCGA-HU-8602-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170051196:170051307:170057468:170057771:170076630:170076726,	170057469	170057771	170057635	170057635	Frame_Shift_Del	T	-	p.K301fs
STAD	TCGA-HU-8602-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984684	123984684	Frame_Shift_Del	C	-	p.A465fs
STAD	TCGA-HU-8602-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919556	57919556	Frame_Shift_Del	C	-	p.T268fs
STAD	TCGA-HU-8602-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-HU-8602-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-HU-8602-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123795601:123795676:123798166:123798266:123799919:123799991,	123798167	123798266	123798171	123798171	Frame_Shift_Del	A	-	p.K1073fs
STAD	TCGA-HU-8602-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327440	188327441	Frame_Shift_Ins	-	G	p.Y307fs
STAD	TCGA-HU-8602-01	CA2	ENST00000520127.1	chr8	86377500:86377698:86386552:86386645:86388026:86388089,	86386553	86386645	86386635	86386635	Frame_Shift_Del	T	-	p.I145fs
STAD	TCGA-HU-8602-01	SEZ6L2	ENST00000308713.5	chr16	29884025:29884064:29884560:29884752:29884858:29884976,29883729:29883847:29884560:29884752:29884858:29885050,	29884561	29884752	29884572	29884572	Frame_Shift_Del	G	-	p.P826fs
STAD	TCGA-HU-8602-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120890	46120890	Frame_Shift_Del	A	-	p.N55fs
STAD	TCGA-HU-8602-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977878	99977878	Frame_Shift_Del	A	-	p.S171fs
STAD	TCGA-HU-8602-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675066	102675067	Frame_Shift_Ins	-	C	p.A218fs
STAD	TCGA-HU-8602-01	GANAB	ENST00000529737.1	chr11	62406830:62406939:62407102:62407203:62414033:62414074,	62407103	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
STAD	TCGA-HU-8602-01	GANAB	ENST00000346178.4,ENST00000356638.3	chr11	62406830:62406939:62407098:62407203:62414033:62414074,	62407099	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
STAD	TCGA-HU-8602-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698177	2698177	Frame_Shift_Del	A	-	p.P852fs
STAD	TCGA-HU-8602-01	PPFIBP1	ENST00000540114.1,ENST00000542629.1,ENST00000537927.1,ENST00000318304.8	chr12	27809548:27809663:27813816:27813878:27817294:27817370,	27813817	27813878	27813829	27813829	Frame_Shift_Del	A	-	p.Q306fs
STAD	TCGA-HU-8602-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106361	168106361	Frame_Shift_Del	A	-	p.E2820fs
STAD	TCGA-HU-8602-01	SLC1A6	ENST00000221742.3,ENST00000430939.2	chr19	15064946:15065141:15067287:15067521:15072813:15073157,	15067288	15067521	15067447	15067447	Frame_Shift_Del	C	-	p.G337fs
STAD	TCGA-HU-8602-01	HLA-A	ENST00000479320.1,ENST00000376809.5,ENST00000496081.1,ENST00000376806.5,ENST00000495183.1,ENST00000461903.1,ENST00000396634.1	chr6	29911309:29911320:29911898:29912174:29912276:29912393,	29911899	29912174	29912081	29912082	Frame_Shift_Ins	-	G	p.W268fs
STAD	TCGA-HU-8602-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086746	144086746	Frame_Shift_Del	C	-	p.A348fs
STAD	TCGA-HU-8602-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548196	165548196	Frame_Shift_Del	T	-	p.N209fs
STAD	TCGA-HU-8602-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000445419.2,ENST00000505222.1,ENST00000503631.1	chr6	82883083:82883155:82891595:82891745:82900789:82900933,	82891596	82891745	82891683	82891683	Frame_Shift_Del	T	-	p.K1213fs
STAD	TCGA-HU-8602-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79581283	79581284	Frame_Shift_Ins	-	G	p.K987fs
STAD	TCGA-HU-8602-01	C11orf49	ENST00000527667.1	chr11	47008758:47008861:47073938:47074069:47159195:47159280,46958330:46958402:47073938:47074069:47159195:47159280,47013093:47013198:47073938:47074069:47159195:47159280,	47073939	47074069	47074001	47074001	Frame_Shift_Del	C	-	p.T71fs
STAD	TCGA-HU-8602-01	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335733	173335733	Frame_Shift_Del	T	-	p.T225fs
STAD	TCGA-HU-8602-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380873	109380873	Frame_Shift_Del	T	-	p.L1293fs
STAD	TCGA-HU-8602-01	LRRIQ3	ENST00000395089.1,ENST00000415760.1,ENST00000354431.4	chr1	74621416:74621550:74648221:74648545:74649119:74649178,	74648222	74648545	74648381	74648381	Frame_Shift_Del	T	-	p.G139fs
STAD	TCGA-HU-8602-01	TINAGL1	ENST00000537531.1	chr1	32042168:32042196:32042734:32043059:32044804:32044868,32042168:32042196:32042734:32043059:32048749:32048842,	32042735	32043059	32043047	32043047	Frame_Shift_Del	C	-	p.F99fs
STAD	TCGA-HU-8602-01	POLD2	ENST00000406581.2,ENST00000452185.1,ENST00000223361.3	chr7	44155467:44155492:44155713:44155871:44156028:44156109,	44155714	44155871	44155802	44155802	Frame_Shift_Del	G	-	p.L346fs
STAD	TCGA-HU-8602-01	POLD2	ENST00000436400.1	chr7	44155467:44155492:44155713:44155808:44156028:44156109,	44155714	44155808	44155802	44155802	Frame_Shift_Del	G	-	p.L346fs
STAD	TCGA-HU-8602-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000534140.1,ENST00000527898.1,ENST00000534672.1,ENST00000528594.1,ENST00000525698.1,ENST00000531862.1	chr11	118509608:118509719:118509879:118509969:118514517:118514658,	118509880	118509969	118509928	118509928	Frame_Shift_Del	G	-	p.T898fs
STAD	TCGA-HU-8602-01	GBP3	ENST00000235878.5,ENST00000370481.4,ENST00000493594.2	chr1	89477510:89477710:89478867:89479110:89479765:89479962,	89478868	89479110	89478904	89478905	Frame_Shift_Del	TA	-	p.278_278del
STAD	TCGA-HU-8602-01	DOCK7	ENST00000340370.5,ENST00000251157.5,ENST00000454575.1	chr1	62923208:62923376:62939652:62939759:62940878:62941022,	62939653	62939759	62939733	62939733	Frame_Shift_Del	A	-	p.L2034fs
STAD	TCGA-HU-8602-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833368	82833368	Frame_Shift_Del	A	-	p.A1515fs
STAD	TCGA-HU-8602-01	DNAJC12	ENST00000483798.2,ENST00000225171.2	chr10	69556839:69556968:69565340:69565545:69571281:69571421,	69565341	69565545	69565466	69565466	Frame_Shift_Del	T	-	p.N126fs
STAD	TCGA-HU-8602-01	RNF185	ENST00000468921.1	chr22	31556228:31556289:31583032:31583256:31588669:31588688,31578954:31579052:31583032:31583256:31588669:31588688,	31583033	31583256	31583131	31583132	Frame_Shift_Ins	-	G	p.A17fs
STAD	TCGA-HU-8602-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073232	197073232	Frame_Shift_Del	T	-	p.I1717fs
STAD	TCGA-HU-8602-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496635	15496636	Frame_Shift_Ins	-	G	p.L393fs
STAD	TCGA-HU-8602-01	RPA2	ENST00000373909.3	chr1	28233691:28233793:28240573:28240680:28241137:28241257,	28240574	28240680	28240614	28240614	Frame_Shift_Del	C	-	p.G26fs
STAD	TCGA-HU-8602-01	SLC44A4	ENST00000544672.1,ENST00000375562.4,ENST00000229729.6	chr6	31832786:31832857:31833091:31833165:31833274:31833378,	31833092	31833165	31833125	31833125	Frame_Shift_Del	T	-	p.N576fs
STAD	TCGA-HU-8602-01	AK5	ENST00000344720.5,ENST00000354567.2	chr1	77763539:77763632:77806061:77806253:77876665:77876756,	77806062	77806253	77806069	77806069	Frame_Shift_Del	C	-	p.T236fs
STAD	TCGA-HU-8602-01	SLC30A8	ENST00000456015.2,ENST00000427715.2,ENST00000521243.1,ENST00000519688.1	chr8	118175667:118175769:118183272:118183407:118184774:118184974,	118183273	118183407	118183307	118183308	Frame_Shift_Del	AG	-	p.288_288del
STAD	TCGA-HU-8602-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390355	45390355	Frame_Shift_Del	C	-	p.S28fs
STAD	TCGA-HU-8602-01	SLC16A10	ENST00000368851.5	chr6	111493897:111494042:111498414:111498868:111527794:111527938,	111498415	111498868	111498763	111498763	Frame_Shift_Del	A	-	p.P279fs
STAD	TCGA-HU-8602-01	HEATR1	ENST00000366581.2	chr1	236736024:236736128:236737501:236737633:236739518:236739677,	236737502	236737633	236737616	236737616	Frame_Shift_Del	A	-	p.A1116fs
STAD	TCGA-HU-8602-01	SH3D19	ENST00000427414.2,ENST00000409598.4,ENST00000455740.1,ENST00000424281.1,ENST00000478503.2,ENST00000514152.1	chr4	152065371:152065440:152069073:152069338:152070651:152070713,152065061:152065202:152069073:152069338:152070651:152070713,	152069074	152069338	152069114	152069114	Frame_Shift_Del	G	-	p.P401fs
STAD	TCGA-HU-8602-01	TFAP2A	ENST00000466073.1	chr6	10400680:10400822:10402724:10402843:10404740:10404827,10398920:10398938:10402724:10402843:10404740:10404827,	10402725	10402843	10402829	10402829	Frame_Shift_Del	T	-	p.N260fs
STAD	TCGA-HU-8602-01	NSD1	ENST00000347982.4,ENST00000503056.1,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176696602:176696808:176700672:176700785:176707565:176707584,	176700673	176700785	176700715	176700715	Frame_Shift_Del	A	-	p.Q1851fs
STAD	TCGA-HU-8602-01	DDX50	ENST00000471475.1,ENST00000373585.3,ENST00000483593.1	chr10	70670062:70670138:70670823:70671002:70672917:70672986,	70670824	70671002	70670982	70670982	Frame_Shift_Del	A	-	p.I206fs
STAD	TCGA-HU-8602-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114274959	114274959	Frame_Shift_Del	A	-	p.L1728fs
STAD	TCGA-HU-8602-01	XRCC6	ENST00000405878.1,ENST00000360079.3,ENST00000359308.4	chr22	42018000:42018090:42024121:42024234:42032116:42032255,	42024122	42024234	42024155	42024155	Frame_Shift_Del	T	-	p.I39fs
STAD	TCGA-HU-8602-01	JMJD8	ENST00000562111.1,ENST00000564436.1	chr16	732957:733087:733166:733234:733321:733441,732771:732874:733166:733234:733321:733342,	733167	733234	733220	733220	Frame_Shift_Del	C	-	p.V197fs
STAD	TCGA-HU-8602-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.1893_1893del
STAD	TCGA-HU-8602-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32087429	32087430	Frame_Shift_Ins	-	G	p.P1292fs
STAD	TCGA-HU-8602-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406040	91406040	Frame_Shift_Del	T	-	p.R291fs
STAD	TCGA-HU-8602-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173278	126173278	Frame_Shift_Del	G	-	p.H720fs
STAD	TCGA-HU-8602-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111654325:111654570:111656671:111656813:111665127:111665246,	111656672	111656813	111656711	111656711	Frame_Shift_Del	A	-	p.G2548fs
STAD	TCGA-HU-8602-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16377972:16378042:16378204:16378315:16378692:16378906,	16378205	16378315	16378297	16378297	Frame_Shift_Del	G	-	p.P463fs
STAD	TCGA-HU-8602-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109379723	109379723	Frame_Shift_Del	C	-	p.P909fs
STAD	TCGA-HU-8602-01	HDAC4	ENST00000541256.1,ENST00000463007.1,ENST00000535493.1,ENST00000345617.3,ENST00000493582.1	chr2	240061379:240061492:240066278:240066410:240078347:240078469,	240066279	240066410	240066299	240066299	Frame_Shift_Del	T	-	p.K282fs
STAD	TCGA-EQ-A4SO-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121963	12121978	Frame_Shift_Del	GCTACAAAGGCAGCAG	-	p.645_650del
STAD	TCGA-EQ-A4SO-01	SPTBN1	ENST00000333896.5,ENST00000356805.4	chr2	54859702:54859905:54864849:54864940:54870119:54870266,	54864850	54864940	54864881	54864881	Frame_Shift_Del	C	-	p.E1266fs
STAD	TCGA-EQ-A4SO-01	GAPDH	ENST00000396861.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646474:6646556:6646749:6647162:6647266:6647283,	6646750	6647162	6647143	6647156	Frame_Shift_Del	TTTGTCAAGCTCAT	-	p.306_311del
STAD	TCGA-EQ-A4SO-01	NCSTN	ENST00000491390.1,ENST00000368065.4,ENST00000435149.1,ENST00000368063.1,ENST00000535857.1,ENST00000392212.4,ENST00000294785.5,ENST00000459963.1	chr1	160325474:160325547:160325652:160325748:160326049:160326137,	160325653	160325748	160325716	160325728	Frame_Shift_Del	TTCAGCGACACAG	-	p.506_510del
STAD	TCGA-BR-6456-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101266	27101266	Frame_Shift_Del	T	-	p.S1516fs
STAD	TCGA-BR-6456-01	VIPAS39	ENST00000553888.1,ENST00000327028.4,ENST00000557658.1,ENST00000553691.1,ENST00000343765.2,ENST00000448935.2,ENST00000556412.1	chr14	77909461:77909495:77910591:77910684:77914836:77914893,	77910592	77910684	77910667	77910668	Frame_Shift_Del	TC	-	p.174_175del
STAD	TCGA-BR-8382-01	CTNNAL1	ENST00000325580.6,ENST00000325551.4,ENST00000374593.4	chr9	111754911:111755099:111761346:111761536:111775581:111775779,	111761347	111761536	111761499	111761499	Frame_Shift_Del	T	-	p.K60fs
STAD	TCGA-BR-8382-01	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351665	71351665	Frame_Shift_Del	A	-	p.S17fs
STAD	TCGA-BR-8382-01	GCLC	ENST00000229416.6,ENST00000513939.1,ENST00000514004.1	chr6	53385575:53385758:53387212:53387325:53409293:53409406,	53387213	53387325	53387262	53387262	Frame_Shift_Del	C	-	p.E72fs
STAD	TCGA-BR-8382-01	ENPP3	ENST00000414305.1,ENST00000357639.3	chr6	132047185:132047340:132054727:132054863:132058494:132058572,	132054728	132054863	132054763	132054766	Frame_Shift_Del	CTGT	-	p.663_664del
STAD	TCGA-BR-8382-01	TIAM2	ENST00000461783.3,ENST00000318981.5,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1	chr6	155448623:155448734:155450351:155451551:155458310:155458746,	155450352	155451551	155450831	155450831	Frame_Shift_Del	C	-	p.S158fs
STAD	TCGA-BR-8382-01	ACAT1	ENST00000527942.1,ENST00000299355.6,ENST00000524833.1,ENST00000265838.4,ENST00000531853.1,ENST00000531813.1	chr11	108002633:108002681:108004546:108004664:108004947:108004971,	108004547	108004664	108004588	108004588	Frame_Shift_Del	T	-	p.S54fs
STAD	TCGA-BR-8382-01	HELQ	ENST00000295488.3,ENST00000510985.1	chr4	84369935:84370114:84374383:84375098:84376549:84376957,	84374384	84375098	84374584	84374584	Frame_Shift_Del	T	-	p.N271fs
STAD	TCGA-BR-8382-01	CACNG7	ENST00000222212.2,ENST00000391767.1	chr19	54418624:54418759:54444723:54444869:54445289:54445640,	54444724	54444869	54444809	54444809	Frame_Shift_Del	T	-	p.Y170fs
STAD	TCGA-BR-8382-01	ZXDC	ENST00000389709.3	chr3	126160607:126160789:126178495:126178580:126180377:126181063,	126178496	126178580	126178522	126178522	Frame_Shift_Del	T	-	p.K729fs
STAD	TCGA-BR-8382-01	CPA5	ENST00000495736.1	chr7	130003281:130003350:130007212:130007831:130008250:130008438,	130007213	130007831	130007804	130007805	Frame_Shift_Ins	-	T	p.I366fs
STAD	TCGA-BR-8382-01	CPA5	ENST00000485477.1,ENST00000393213.3,ENST00000461828.1,ENST00000474905.1,ENST00000466363.2,ENST00000355388.3	chr7	130007212:130007412:130007746:130007831:130008250:130008438,	130007747	130007831	130007804	130007805	Frame_Shift_Ins	-	T	p.I366fs
STAD	TCGA-BR-8382-01	MAST3	ENST00000262811.6	chr19	18246549:18246651:18248048:18248171:18249824:18249934,	18248049	18248171	18248078	18248078	Frame_Shift_Del	T	-	p.P638fs
STAD	TCGA-BR-8382-01	FOPNL	ENST00000575073.1	chr16	15961276:15961373:15977864:15978062:15982414:15982450,15967347:15967484:15977864:15978062:15982414:15982450,15973660:15973745:15977864:15978062:15982414:15982450,	15977865	15978062	15978038	15978038	Frame_Shift_Del	T	-	p.K18fs
STAD	TCGA-BR-8382-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722672:722805:723240:723353:724723:724829,	723241	723353	723304	723305	Frame_Shift_Ins	-	C	p.T469fs
STAD	TCGA-BR-8382-01	CDYL	ENST00000397588.3	chr6	4776675:4777041:4891946:4892613:4935748:4936005,	4891947	4892613	4892244	4892244	Frame_Shift_Del	A	-	p.S107fs
STAD	TCGA-BR-8382-01	USP8	ENST00000433963.1,ENST00000559329.1,ENST00000561330.1,ENST00000560730.1,ENST00000558091.1,ENST00000396444.3,ENST00000560297.1,ENST00000307179.4	chr15	50731239:50731374:50733545:50733690:50751196:50751267,50731239:50731374:50733545:50733690:50741596:50741637,	50733546	50733690	50733661	50733661	Frame_Shift_Del	A	-	p.I73fs
STAD	TCGA-BR-8382-01	DKC1	ENST00000437719.1,ENST00000369550.5,ENST00000413910.1	chrX	153994539:153994675:153995271:153995336:153995530:153995657,	153995272	153995336	153995316	153995316	Frame_Shift_Del	G	-	p.E164fs
STAD	TCGA-BR-8382-01	MCTP2	ENST00000557742.1	chr15	94899365:94899530:94901775:94901841:94910833:94911020,	94901776	94901841	94901801	94901802	Frame_Shift_Ins	-	G	p.W421fs
STAD	TCGA-BR-8382-01	MCTP2	ENST00000456504.1,ENST00000451018.3,ENST00000331706.4,ENST00000357742.4	chr15	94899365:94899530:94901710:94901841:94910833:94911020,	94901711	94901841	94901801	94901802	Frame_Shift_Ins	-	G	p.W421fs
STAD	TCGA-BR-8382-01	SPATA6	ENST00000490850.1,ENST00000396199.3,ENST00000603831.1,ENST00000371847.3	chr1	48771476:48771550:48821341:48821441:48825257:48825394,	48821342	48821441	48821382	48821382	Frame_Shift_Del	T	-	p.N385fs
STAD	TCGA-BR-8382-01	ATAT1	ENST00000330083.5,ENST00000376485.4,ENST00000376478.2	chr6	30609952:30610024:30610544:30610788:30613671:30613751,	30610545	30610788	30610619	30610619	Frame_Shift_Del	C	-	p.P266fs
STAD	TCGA-BR-8382-01	ABCB1	ENST00000488737.2,ENST00000543898.1,ENST00000265724.3,ENST00000496821.1	chr7	87144546:87144744:87145824:87145981:87148641:87148782,	87145825	87145981	87145866	87145866	Frame_Shift_Del	T	-	p.T1015fs
STAD	TCGA-BR-8382-01	ACOX3	ENST00000503233.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8401282:8401379:8407681:8407770:8411938:8412082,	8407682	8407770	8407708	8407708	Frame_Shift_Del	T	-	p.L251fs
STAD	TCGA-BR-8382-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112460	36112461	Frame_Shift_Ins	-	A	p.Q683fs
STAD	TCGA-BR-8382-01	HECW2	ENST00000409111.1,ENST00000260983.3	chr2	197084762:197084877:197085518:197085665:197086934:197087064,	197085519	197085665	197085637	197085637	Frame_Shift_Del	C	-	p.G1392fs
STAD	TCGA-BR-8382-01	GTF3C1	ENST00000561623.1,ENST00000356183.4	chr16	27506531:27506813:27508957:27509142:27509950:27510054,	27508958	27509142	27509009	27509009	Frame_Shift_Del	T	-	p.S767fs
STAD	TCGA-BR-8382-01	GATA3	ENST00000379328.3	chr10	8097249:8097859:8100267:8100804:8105955:8106101,	8100268	8100804	8100425	8100425	Frame_Shift_Del	C	-	p.Y133fs
STAD	TCGA-BR-8382-01	IRAK1	ENST00000477274.1,ENST00000369980.3,ENST00000437278.1,ENST00000369973.3,ENST00000393687.2,ENST00000393682.1,ENST00000369974.2,ENST00000429936.2	chrX	153281489:153281548:153281887:153282095:153282399:153282445,	153281888	153282095	153281967	153281967	Frame_Shift_Del	C	-	p.G386fs
STAD	TCGA-BR-8382-01	HIVEP1	ENST00000487103.1,ENST00000478545.1,ENST00000379388.2,ENST00000491710.1	chr6	12015819:12015901:12089416:12089470:12120122:12120167,	12089417	12089470	12089462	12089463	Frame_Shift_Ins	-	A	p.S29fs
STAD	TCGA-BR-8382-01	SPG21	ENST00000559199.1,ENST00000204566.2,ENST00000416889.2,ENST00000433215.2	chr15	65261591:65261699:65262451:65262560:65266939:65267085,	65262452	65262560	65262526	65262526	Frame_Shift_Del	T	-	p.I163fs
STAD	TCGA-BR-8382-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22805689	22805689	Frame_Shift_Del	A	-	p.D732fs
STAD	TCGA-BR-4361-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186092082:186092352:186094735:186094926:186097209:186097423,	186094736	186094926	186094843	186094843	Frame_Shift_Del	A	-	p.W4202X
STAD	TCGA-BR-4361-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120823563:120823673:120827488:120827662:120831617:120831783,	120827489	120827662	120827592	120827592	Frame_Shift_Del	G	-	p.V601fs
STAD	TCGA-BR-4361-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743303	130743303	Frame_Shift_Del	T	-	p.K283fs
STAD	TCGA-BR-4361-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926367	1926367	Frame_Shift_Del	G	-	p.R392fs
STAD	TCGA-BR-4361-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926367	1926367	Frame_Shift_Del	G	-	p.R392fs
STAD	TCGA-BR-4361-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104628	26104629	Frame_Shift_Ins	-	G	p.P430fs
STAD	TCGA-BR-4361-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.W386fs
STAD	TCGA-BR-4361-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138856848:138857112:138864705:138864887:138865322:138865426,	138864706	138864887	138864772	138864773	Frame_Shift_Ins	-	T	p.M632fs
STAD	TCGA-BR-4361-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580103	7580103	Frame_Shift_Del	A	-	p.Q1227fs
STAD	TCGA-BR-4361-01	NLRP12	ENST00000345770.5,ENST00000391772.1,ENST00000391773.1	chr19	54308533:54308704:54310748:54310922:54312840:54314542,	54310749	54310922	54310804	54310804	Frame_Shift_Del	C	-	p.L730fs
STAD	TCGA-BR-4361-01	NLRP12	ENST00000354278.3,ENST00000535162.1,ENST00000351894.4,ENST00000391775.3,ENST00000324134.6	chr19	54308533:54308704:54310748:54310919:54312840:54314542,	54310749	54310919	54310804	54310804	Frame_Shift_Del	C	-	p.L730fs
STAD	TCGA-BR-4361-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073336	33073336	Frame_Shift_Del	G	-	p.P250fs
STAD	TCGA-BR-4361-01	BTAF1	ENST00000265990.6	chr10	93743957:93744161:93748910:93749337:93751875:93752066,	93748911	93749337	93748921	93748921	Frame_Shift_Del	T	-	p.V813fs
STAD	TCGA-BR-4361-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41814295:41814448:41814962:41815158:41815442:41815552,	41814963	41815158	41815100	41815101	Frame_Shift_Ins	-	G	p.S869fs
STAD	TCGA-BR-4361-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.A201fs
STAD	TCGA-BR-4361-01	RBL2	ENST00000544405.2,ENST00000567964.2,ENST00000262133.6	chr16	53472927:53473058:53476569:53476770:53480953:53481018,	53476570	53476770	53476704	53476704	Frame_Shift_Del	T	-	p.I169fs
STAD	TCGA-BR-4361-01	PIK3R4	ENST00000356763.3	chr3	130452391:130452974:130454712:130454846:130463329:130464108,	130454713	130454846	130454824	130454824	Frame_Shift_Del	A	-	p.T253fs
STAD	TCGA-BR-4361-01	ENTPD7	ENST00000370489.4	chr10	101455712:101455879:101458290:101458615:101460729:101460815,	101458291	101458615	101458541	101458541	Frame_Shift_Del	T	-	p.E420fs
STAD	TCGA-BR-4361-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277364	186277364	Frame_Shift_Del	C	-	p.T838fs
STAD	TCGA-BR-4361-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406040	91406040	Frame_Shift_Del	T	-	p.R291fs
STAD	TCGA-BR-4361-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580509	7580509	Frame_Shift_Del	A	-	p.L1362X
STAD	TCGA-BR-4361-01	MVB12B	ENST00000361171.3,ENST00000436593.3	chr9	129154344:129154474:129157853:129157976:129184132:129184227,	129157854	129157976	129157961	129157961	Frame_Shift_Del	C	-	p.A216fs
STAD	TCGA-BR-4361-01	GPSM3	ENST00000375040.3,ENST00000375043.3	chr6	32159485:32159647:32159924:32160027:32160248:32160293,32159485:32159685:32159924:32160027:32160248:32160293,	32159925	32160027	32160025	32160026	Frame_Shift_Ins	-	A	p.G15fs
STAD	TCGA-BR-4361-01	GRIP1	ENST00000540433.1,ENST00000538211.1,ENST00000398016.3	chr12	66839175:66839288:66849188:66849344:66856703:66856873,	66849189	66849344	66849209	66849209	Frame_Shift_Del	T	-	p.K393fs
STAD	TCGA-BR-4361-01	GRIP1	ENST00000543172.1	chr12	66839175:66839288:66849188:66849341:66856703:66856873,	66849189	66849341	66849209	66849209	Frame_Shift_Del	T	-	p.K393fs
STAD	TCGA-BR-4361-01	TMEM132A	ENST00000005286.4,ENST00000453848.2,ENST00000534983.1	chr11	60699226:60699356:60699455:60699599:60701013:60701043,	60699456	60699599	60699534	60699534	Frame_Shift_Del	G	-	p.G431fs
STAD	TCGA-BR-4361-01	AUP1	ENST00000463900.1,ENST00000377526.3	chr2	74754067:74754186:74754374:74754490:74754597:74754717,	74754375	74754490	74754443	74754443	Frame_Shift_Del	C	-	p.A337fs
STAD	TCGA-BR-4361-01	PPP1R2	ENST00000438848.1,ENST00000328432.3	chr3	195243722:195243740:195245814:195245982:195250489:195250584,	195245815	195245982	195245976	195245976	Frame_Shift_Del	T	-	p.K137fs
STAD	TCGA-BR-4361-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136085784:136085924:136087949:136088124:136096501:136096594,	136087950	136088124	136088059	136088060	Frame_Shift_Del	CT	-	p.812_813del
STAD	TCGA-BR-4361-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67985725:67985940:67986086:67986328:67988545:67988676,	67986087	67986328	67986298	67986298	Frame_Shift_Del	A	-	p.Y238fs
STAD	TCGA-BR-4361-01	PUS7	ENST00000481939.1,ENST00000356362.2,ENST00000469408.1	chr7	105121498:105121624:105122758:105122887:105131986:105132064,	105122759	105122887	105122810	105122810	Frame_Shift_Del	T	-	p.N333fs
STAD	TCGA-BR-4361-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173391	Frame_Shift_Del	CC	-	p.223_223del
STAD	TCGA-BR-4361-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173391	Frame_Shift_Del	CC	-	p.223_223del
STAD	TCGA-BR-4361-01	ATP6V0A4	ENST00000353492.4,ENST00000393054.1,ENST00000310018.2	chr7	138391270:138391462:138394368:138394540:138400508:138400626,	138394369	138394540	138394461	138394461	Frame_Shift_Del	A	-	p.I780fs
STAD	TCGA-BR-4361-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.T118fs
STAD	TCGA-BR-4361-01	ZHX3	ENST00000544979.2	chr20	39813555:39813841:39830922:39833706:39842373:39842539,	39830923	39833706	39832962	39832962	Frame_Shift_Del	T	-	p.I199fs
STAD	TCGA-BR-4361-01	ZHX3	ENST00000560361.1	chr20	39813555:39813841:39830696:39833706:39897629:39897723,39813555:39813841:39830696:39833706:39897618:39897723,39813555:39813841:39830696:39833706:39842373:39842539,	39830697	39833706	39832962	39832962	Frame_Shift_Del	T	-	p.I199fs
STAD	TCGA-BR-4361-01	PCMTD1	ENST00000360540.5,ENST00000522514.1	chr8	52746077:52746249:52758220:52758323:52773404:52773444,	52758221	52758323	52758239	52758239	Frame_Shift_Del	T	-	p.N131fs
STAD	TCGA-BR-4361-01	ZP1	ENST00000278853.5	chr11	60636629:60636739:60637009:60637373:60637804:60637948,	60637010	60637373	60637322	60637322	Frame_Shift_Del	C	-	p.Q210fs
STAD	TCGA-BR-4361-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410404	3410404	Frame_Shift_Del	C	-	p.A1440fs
STAD	TCGA-BR-4361-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1015927	1015927	Frame_Shift_Del	C	-	p.V2292fs
STAD	TCGA-BR-4361-01	DNAJA1	ENST00000330899.4	chr9	33026479:33026614:33026810:33026988:33029882:33029987,	33026811	33026988	33026949	33026949	Frame_Shift_Del	T	-	p.M90fs
STAD	TCGA-BR-4361-01	IGSF9B	ENST00000533871.2	chr11	133781780:133781902:133789636:133791292:133792071:133792117,	133789637	133791292	133790374	133790374	Frame_Shift_Del	G	-	p.T1083fs
STAD	TCGA-BR-4361-01	VILL	ENST00000383759.2,ENST00000484717.1,ENST00000283713.6	chr3	38038973:38039176:38039580:38039659:38039756:38039855,	38039581	38039659	38039624	38039625	Frame_Shift_Ins	-	C	p.T270fs
STAD	TCGA-BR-4361-01	PPEF2	ENST00000511880.3,ENST00000286719.7	chr4	76788465:76788572:76793177:76793320:76794279:76794465,	76793178	76793320	76793305	76793305	Frame_Shift_Del	A	-	p.S508fs
STAD	TCGA-BR-4361-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000431916.1,ENST00000426982.2,ENST00000440579.1	chr1	35925908:35926038:35928221:35928314:35932208:35932296,	35928222	35928314	35928292	35928292	Frame_Shift_Del	G	-	p.I409fs
STAD	TCGA-BR-4361-01	AAMDC	ENST00000393427.2,ENST00000526164.1	chr11	77532200:77532287:77553524:77553674:77580767:77580863,	77553525	77553674	77553633	77553633	Frame_Shift_Del	G	-	p.P30fs
STAD	TCGA-BR-4361-01	EML4	ENST00000401738.3,ENST00000318522.5	chr2	42483640:42483770:42488260:42488434:42490317:42490446,	42488261	42488434	42488302	42488302	Frame_Shift_Del	A	-	p.E127fs
STAD	TCGA-BR-4361-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000481180.1,ENST00000334652.5,ENST00000448243.1,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93648916:93649052:93649534:93649703:93651901:93651955,	93649535	93649703	93649684	93649684	Frame_Shift_Del	A	-	p.Q95fs
STAD	TCGA-BR-4361-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80881073	80881074	Frame_Shift_Ins	-	T	p.I236fs
STAD	TCGA-BR-4361-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
STAD	TCGA-BR-4361-01	MTIF2	ENST00000417741.1	chr2	55481176:55481337:55481789:55481961:55489451:55489563,55479711:55479789:55481789:55481961:55489451:55489563,	55481790	55481961	55481808	55481808	Frame_Shift_Del	T	-	p.N162fs
STAD	TCGA-BR-4361-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163027	4163028	Frame_Shift_Ins	-	G	p.R301fs
STAD	TCGA-BR-4361-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000483086.1,ENST00000487169.1,ENST00000310931.4	chr2	242176029:242176184:242178063:242178202:242179016:242179151,	242178064	242178202	242178074	242178075	Frame_Shift_Del	CT	-	p.913_914del
STAD	TCGA-BR-4361-01	ACSM3	ENST00000562251.1,ENST00000289416.5,ENST00000567387.1,ENST00000450120.2	chr16	20803557:20803657:20807691:20807811:20808207:20808251,	20807692	20807811	20807775	20807776	Frame_Shift_Ins	-	A	p.V546fs
STAD	TCGA-BR-4361-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831652	2831652	Frame_Shift_Del	C	-	p.S397fs
STAD	TCGA-BR-4361-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948388	169948389	Frame_Shift_Ins	-	A	p.E221fs
STAD	TCGA-BR-4361-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449739	26449740	Frame_Shift_Ins	-	T	p.C190fs
STAD	TCGA-BR-4361-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769342	176769342	Frame_Shift_Del	T	-	p.N126fs
STAD	TCGA-BR-4361-01	RALYL	ENST00000518566.1,ENST00000522455.1,ENST00000521695.1,ENST00000517638.1,ENST00000523850.1,ENST00000521268.1	chr8	85785518:85785632:85799838:85800011:85833128:85833717,	85799839	85800011	85799997	85799997	Frame_Shift_Del	G	-	p.D294fs
STAD	TCGA-BR-4361-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919175	57919175	Frame_Shift_Del	C	-	p.G141fs
STAD	TCGA-BR-4361-01	NBEAL1	ENST00000414576.2,ENST00000449802.1	chr2	204055014:204055112:204058517:204058634:204062024:204062114,	204058518	204058634	204058623	204058623	Frame_Shift_Del	T	-	p.S2313fs
STAD	TCGA-BR-4361-01	DHRS7	ENST00000557751.1,ENST00000216500.5,ENST00000536410.2,ENST00000554101.1,ENST00000557185.1	chr14	60616176:60616286:60616782:60616905:60619656:60619892,	60616783	60616905	60616897	60616897	Frame_Shift_Del	A	-	p.N215fs
STAD	TCGA-BR-4361-01	GNPDA2	ENST00000507917.1	chr4	44712969:44713154:44719129:44719312:44724100:44724259,	44719130	44719312	44719257	44719257	Frame_Shift_Del	A	-	p.K95fs
STAD	TCGA-BR-4361-01	DIAPH3	ENST00000400319.1,ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4,ENST00000400320.1,ENST00000465066.1	chr13	60348861:60348957:60384921:60385057:60407240:60407403,	60384922	60385057	60385030	60385030	Frame_Shift_Del	T	-	p.R1019fs
STAD	TCGA-BR-4361-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000487363.1,ENST00000397519.2	chr9	15486824:15486929:15489983:15490122:15506558:15506635,	15489984	15490122	15490046	15490050	Frame_Shift_Del	CTTTT	-	p.75_76del
STAD	TCGA-BR-4361-01	RSRC2	ENST00000525335.2	chr12	123005931:123005975:123006689:123006876:123011394:123011496,	123006690	123006876	123006781	123006781	Frame_Shift_Del	T	-	p.E25fs
STAD	TCGA-BR-4361-01	RSRC2	ENST00000527399.3,ENST00000532695.1,ENST00000527796.2,ENST00000354654.2,ENST00000433877.2,ENST00000525387.1	chr12	123005931:123005975:123006689:123006846:123011394:123011483,	123006690	123006846	123006781	123006781	Frame_Shift_Del	T	-	p.E25fs
STAD	TCGA-BR-4361-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126859151:126859274:126860222:126860612:126862309:126862470,	126860223	126860612	126860489	126860489	Frame_Shift_Del	C	-	p.A123fs
STAD	TCGA-BR-4361-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121039	95121040	Frame_Shift_Ins	-	A	p.V186fs
STAD	TCGA-BR-4361-01	PTPN4	ENST00000433888.1	chr2	120672754:120672818:120677644:120677817:120684173:120684242,120672754:120672818:120677644:120677817:120689999:120690125,	120677645	120677817	120677773	120677773	Frame_Shift_Del	T	-	p.N319fs
STAD	TCGA-BR-4361-01	TRERF1	ENST00000541110.1	chr6	42227076:42227461:42230997:42231306:42232441:42232592,	42230998	42231306	42231112	42231112	Frame_Shift_Del	G	-	p.S611fs
STAD	TCGA-BR-4361-01	TRERF1	ENST00000372922.4	chr6	42227076:42227461:42231057:42231306:42232441:42232592,	42231058	42231306	42231112	42231112	Frame_Shift_Del	G	-	p.S611fs
STAD	TCGA-BR-4361-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.A150fs
STAD	TCGA-BR-4361-01	CAMSAP3	ENST00000446248.2,ENST00000160298.4	chr19	7675585:7675679:7675762:7675817:7675980:7676054,	7675763	7675817	7675769	7675769	Frame_Shift_Del	C	-	p.S361fs
STAD	TCGA-BR-4361-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022426	11022426	Frame_Shift_Del	A	-	p.P180fs
STAD	TCGA-BR-4361-01	SPDYA	ENST00000334056.5,ENST00000379579.4	chr2	29052015:29052185:29063037:29063335:29072715:29073300,	29063038	29063335	29063182	29063182	Frame_Shift_Del	A	-	p.G232fs
STAD	TCGA-BR-4361-01	RBPMS	ENST00000517860.1,ENST00000397323.4,ENST00000523115.1,ENST00000287771.5,ENST00000520191.1,ENST00000520161.1,ENST00000523717.1,ENST00000339877.4,ENST00000320203.4,ENST00000519647.1,ENST00000522694.1	chr8	30336845:30336893:30361802:30361953:30402010:30402073,	30361803	30361953	30361897	30361898	Frame_Shift_Ins	-	A	p.P114fs
STAD	TCGA-BR-4361-01	SLIT2	ENST00000273739.5,ENST00000508824.1,ENST00000503837.1,ENST00000504154.1,ENST00000503823.1	chr4	20270432:20270504:20469374:20469446:20482338:20482410,	20469375	20469446	20469438	20469438	Frame_Shift_Del	A	-	p.I153fs
STAD	TCGA-BR-4361-01	THAP4	ENST00000407315.1	chr2	242545728:242545888:242572331:242573494:242576355:242576864,	242572332	242573494	242573292	242573292	Frame_Shift_Del	C	-	p.A94fs
STAD	TCGA-BR-4361-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041489	86041489	Frame_Shift_Del	A	-	p.I500fs
STAD	TCGA-BR-4361-01	TANC1	ENST00000263635.6,ENST00000454300.1	chr2	159922407:159922483:159954148:159954346:159992704:159992809,	159954149	159954346	159954333	159954334	Frame_Shift_Ins	-	A	p.N82fs
STAD	TCGA-BR-4361-01	SYNE1	ENST00000367255.5,ENST00000265368.4,ENST00000448038.1,ENST00000471834.1,ENST00000423061.1	chr6	152671752:152671905:152673161:152673488:152674397:152674568,	152673162	152673488	152673183	152673183	Frame_Shift_Del	T	-	p.A3854fs
STAD	TCGA-BR-4361-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730180	37730181	Frame_Shift_Ins	-	T	p.Q714fs
STAD	TCGA-BR-4361-01	ODF2	ENST00000444993.2,ENST00000351030.3	chr9	131221845:131221936:131222828:131222945:131223220:131223289,	131222829	131222945	131222909	131222909	Frame_Shift_Del	A	-	p.I112fs
STAD	TCGA-BR-4361-01	ODF2	ENST00000448249.3,ENST00000469582.2,ENST00000535026.1	chr9	131221845:131221936:131222791:131222945:131223220:131223289,	131222792	131222945	131222909	131222909	Frame_Shift_Del	A	-	p.I112fs
STAD	TCGA-BR-4361-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56484643	56484643	Frame_Shift_Del	T	-	p.T1397fs
STAD	TCGA-BR-4361-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167849012:167849102:167850537:167851073:167855037:167855146,	167850538	167851073	167850888	167850888	Frame_Shift_Del	C	-	p.S542fs
STAD	TCGA-BR-8369-01	PLB1	ENST00000329020.6,ENST00000436544.1,ENST00000327757.5	chr2	28802493:28802574:28804934:28805000:28805271:28805372,	28804935	28805000	28805000	28805004	Frame_Shift_Del	GGTAC	-	p.544_544del
STAD	TCGA-CG-4476-01	BIRC6	ENST00000421745.2	chr2	32737999:32738221:32740056:32740837:32743320:32743464,	32740057	32740837	32740737	32740740	Frame_Shift_Del	GACT	-	p.3750_3751del
STAD	TCGA-BR-7717-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67645936	67645936	Frame_Shift_Del	C	-	p.H288fs
STAD	TCGA-IN-7808-01	CMPK1	ENST00000371871.4,ENST00000371870.3	chr1	47799612:47799788:47834140:47834287:47838626:47838743,	47834141	47834287	47834142	47834143	Frame_Shift_Ins	-	AT	p.K58fs
STAD	TCGA-BR-8284-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16043433:16043656:16101672:16101849:16103632:16103758,	16101673	16101849	16101752	16101753	Frame_Shift_Ins	-	T	p.C43fs
STAD	TCGA-BR-8284-01	PKLR	ENST00000392414.3,ENST00000342741.4	chr1	155264272:155264543:155264906:155265093:155265227:155265359,	155264907	155265093	155264957	155264957	Frame_Shift_Del	C	-	p.G215fs
STAD	TCGA-CG-5730-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107592453:107592668:107593974:107594199:107595911:107596075,	107593975	107594199	107594141	107594141	Frame_Shift_Del	C	-	p.S972fs
STAD	TCGA-BR-A4J8-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578266	7578267	Frame_Shift_Ins	-	A	p.I195fs
STAD	TCGA-D7-6519-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016732	1016733	Frame_Shift_Del	TG	-	p.2023_2024del
STAD	TCGA-HU-8604-01	RAB5B	ENST00000553116.1,ENST00000360299.5	chr12	56383739:56383882:56384465:56384588:56385143:56385237,	56384466	56384588	56384549	56384549	Frame_Shift_Del	C	-	p.N133fs
STAD	TCGA-HU-8604-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579585	7579585	Frame_Shift_Del	G	-	p.L35fs
STAD	TCGA-CG-4469-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99969326	99969326	Frame_Shift_Del	T	-	p.T485fs
STAD	TCGA-CG-4469-01	CPS1	ENST00000233072.5,ENST00000451903.2,ENST00000430249.2	chr2	211473084:211473283:211476840:211477017:211481146:211481265,	211476841	211477017	211476868	211476869	Frame_Shift_Del	GA	-	p.812_813del
STAD	TCGA-CG-4469-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000470384.1,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981772:201981887:201982074:201982164:201982309:201982325,	201982075	201982164	201982111	201982112	Frame_Shift_Ins	-	CGGTG	p.S212fs
STAD	TCGA-BR-8483-01	TMEM39A	ENST00000319172.5	chr3	119156780:119156950:119165864:119166019:119171293:119171377,	119165865	119166019	119165885	119165886	Frame_Shift_Ins	-	T	p.N185fs
STAD	TCGA-BR-8483-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57105775:57106084:57109256:57109451:57119173:57119259,	57109257	57109451	57109355	57109364	Frame_Shift_Del	AATGGATCAA	-	p.614_617del
STAD	TCGA-BR-8483-01	ATMIN	ENST00000564241.1,ENST00000566488.1,ENST00000299575.4	chr16	81074960:81075086:81075885:81076085:81076765:81078779,	81075886	81076085	81075923	81075926	Frame_Shift_Del	GTAG	-	p.167_168del
STAD	TCGA-BR-8360-01	CCDC150	ENST00000389175.4,ENST00000471546.1	chr2	197504438:197504502:197511064:197511228:197521356:197521577,	197511065	197511228	197511222	197511222	Frame_Shift_Del	A	-	p.E57fs
STAD	TCGA-BR-8360-01	WNT2	ENST00000265441.3,ENST00000449446.1	chr7	116917584:116918438:116937665:116937930:116955124:116955338,	116937666	116937930	116937798	116937798	Frame_Shift_Del	C	-	p.A241fs
STAD	TCGA-BR-8360-01	WEE1	ENST00000299613.6,ENST00000450114.2	chr11	9598688:9598810:9603078:9603225:9606804:9606900,	9603079	9603225	9603177	9603177	Frame_Shift_Del	T	-	p.G413fs
STAD	TCGA-BR-8360-01	LEMD1	ENST00000367154.1,ENST00000391936.2	chr1	205385359:205385424:205388357:205388480:205389582:205389702,205350512:205350984:205388357:205388480:205389582:205389702,	205388358	205388480	205388453	205388453	Frame_Shift_Del	T	-	p.K37fs
STAD	TCGA-BR-8360-01	RPL12	ENST00000361436.5,ENST00000497322.1,ENST00000497825.1	chr9	130210615:130210702:130211559:130211641:130211888:130211979,	130211560	130211641	130211589	130211589	Frame_Shift_Del	G	-	p.P88fs
STAD	TCGA-BR-8360-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014792	119014792	Frame_Shift_Del	C	-	p.G235fs
STAD	TCGA-BR-8360-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118568	58118568	Frame_Shift_Del	A	-	p.R558fs
STAD	TCGA-BR-8360-01	RBM28	ENST00000223073.2,ENST00000487602.1,ENST00000415472.2	chr7	127970871:127970981:127973343:127973416:127975596:127975733,	127973344	127973416	127973348	127973349	Frame_Shift_Ins	-	A	p.I339fs
STAD	TCGA-BR-8360-01	MAP2K7	ENST00000397979.3,ENST00000468058.1,ENST00000545011.1,ENST00000397983.3	chr19	7975983:7976044:7976134:7976215:7976320:7976463,	7976135	7976215	7976149	7976149	Frame_Shift_Del	C	-	p.D290fs
STAD	TCGA-BR-8360-01	STEAP4	ENST00000380079.4	chr7	87910229:87910394:87911955:87912483:87913128:87913205,	87911956	87912483	87912360	87912360	Frame_Shift_Del	G	-	p.L194fs
STAD	TCGA-BR-8360-01	KIFAP3	ENST00000538366.1	chr1	170015852:170016007:170024445:170024577:170043576:170043729,	170024446	170024577	170024447	170024447	Frame_Shift_Del	T	-	p.I55fs
STAD	TCGA-BR-8360-01	WDR66	ENST00000397454.2,ENST00000288912.4	chr12	122380800:122380881:122386889:122386967:122389385:122389436,	122386890	122386967	122386901	122386901	Frame_Shift_Del	T	-	p.T401fs
STAD	TCGA-BR-8360-01	PARP4	ENST00000381989.3	chr13	25029154:25029350:25030478:25030616:25033181:25033260,	25030479	25030616	25030500	25030500	Frame_Shift_Del	T	-	p.H848fs
STAD	TCGA-BR-8360-01	DNAJB13	ENST00000339764.1	chr11	73670538:73670700:73675922:73676080:73677182:73677296,	73675923	73676080	73676056	73676057	Frame_Shift_Ins	-	A	p.T156fs
STAD	TCGA-BR-8360-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389836	11389837	Frame_Shift_Ins	-	A	p.W138fs
STAD	TCGA-BR-8360-01	FHL3	ENST00000477194.1	chr1	38464645:38464820:38464928:38465104:38471028:38471174,38464645:38464820:38464928:38465104:38471110:38471278,	38464929	38465104	38465063	38465064	Frame_Shift_Del	CA	-	p.8_8del
STAD	TCGA-BR-8360-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762331	36762332	Frame_Shift_Ins	-	A	p.E755fs
STAD	TCGA-BR-8360-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800273	28800273	Frame_Shift_Del	C	-	p.S354fs
STAD	TCGA-BR-8360-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31604972	31604973	Frame_Shift_Ins	-	A	p.T511fs
STAD	TCGA-BR-8360-01	NUMA1	ENST00000393695.3,ENST00000540843.1,ENST00000351960.6,ENST00000537905.1,ENST00000537217.1,ENST00000535087.1,ENST00000366394.3	chr11	71740250:71740336:71746947:71747021:71752004:71752132,71740250:71740336:71746947:71747021:71780887:71780957,	71746948	71747021	71746965	71746965	Frame_Shift_Del	C	-	p.A9fs
STAD	TCGA-BR-8360-01	OSMR	ENST00000274276.3	chr5	38921719:38921896:38923251:38923356:38924523:38924697,	38923252	38923356	38923329	38923329	Frame_Shift_Del	A	-	p.E614fs
STAD	TCGA-BR-8360-01	NKIRAS2	ENST00000491638.1	chr17	40173581:40173689:40174393:40174658:40175671:40175859,	40174394	40174658	40174601	40174602	Frame_Shift_Del	TT	-	p.93_93del
STAD	TCGA-BR-8360-01	NKIRAS2	ENST00000479407.1	chr17	40174416:40174490:40174587:40174658:40175671:40175859,	40174588	40174658	40174601	40174602	Frame_Shift_Del	TT	-	p.93_93del
STAD	TCGA-BR-8360-01	NKIRAS2	ENST00000393880.1,ENST00000393881.3,ENST00000393885.4,ENST00000307641.5	chr17	40173581:40173689:40174416:40174658:40175671:40175859,	40174417	40174658	40174601	40174602	Frame_Shift_Del	TT	-	p.93_93del
STAD	TCGA-BR-8360-01	NKIRAS2	ENST00000485789.1	chr17	40174416:40174490:40174582:40174658:40175671:40175859,	40174583	40174658	40174601	40174602	Frame_Shift_Del	TT	-	p.93_93del
STAD	TCGA-BR-8360-01	IVNS1ABP	ENST00000392007.3,ENST00000367498.3,ENST00000459929.1	chr1	185276620:185276794:185277931:185278007:185278134:185278304,	185277932	185278007	185277956	185277957	Frame_Shift_Ins	-	T	p.K111fs
STAD	TCGA-BR-8360-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103736	168103737	Frame_Shift_Ins	-	A	p.I1945fs
STAD	TCGA-BR-8360-01	AKTIP	ENST00000563928.1,ENST00000568022.1,ENST00000561799.1,ENST00000565408.1,ENST00000568596.1,ENST00000566045.1,ENST00000563108.1,ENST00000300245.4,ENST00000570004.1,ENST00000394657.7	chr16	53529173:53529238:53532302:53532508:53534129:53534241,	53532303	53532508	53532414	53532414	Frame_Shift_Del	T	-	p.N46fs
STAD	TCGA-BR-8360-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.A150fs
STAD	TCGA-BR-8360-01	PGF	ENST00000555567.1,ENST00000238607.6	chr14	75409412:75409436:75412915:75412978:75413081:75413111,	75412916	75412978	75412941	75412942	Frame_Shift_Del	TC	-	p.154_154del
STAD	TCGA-BR-8360-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
STAD	TCGA-BR-8360-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639588	47639588	Frame_Shift_Del	A	-	p.R227fs
STAD	TCGA-B7-5816-01	PIK3AP1	ENST00000371110.2,ENST00000371109.3,ENST00000467625.1,ENST00000339364.5	chr10	98355321:98355391:98362036:98362155:98363735:98363806,	98362037	98362155	98362066	98362066	Frame_Shift_Del	G	-	p.R778fs
STAD	TCGA-B7-5816-01	CTNNB1	ENST00000349496.5,ENST00000396185.3,ENST00000396183.3,ENST00000453024.1,ENST00000405570.1	chr3	41267150:41267352:41268698:41268843:41274831:41274935,	41268699	41268843	41268763	41268763	Frame_Shift_Del	A	-	p.E334fs
STAD	TCGA-B7-5816-01	APBB2	ENST00000506352.1,ENST00000295974.8,ENST00000513140.1	chr4	40946881:40947090:41015599:41016415:41035252:41035321,40946881:40947087:41015599:41016415:41035252:41035321,	41015600	41016415	41015678	41015678	Frame_Shift_Del	G	-	p.L253fs
STAD	TCGA-B7-5816-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944739:139944990:139945353:139945581:139945662:139945822,	139945354	139945581	139945517	139945517	Frame_Shift_Del	C	-	p.G204fs
STAD	TCGA-B7-5816-01	SIPA1L1	ENST00000555818.1,ENST00000554874.1,ENST00000381232.3	chr14	72200382:72200529:72201993:72202108:72204960:72205042,72200382:72200529:72201993:72202108:72204957:72205042,	72201994	72202108	72202008	72202008	Frame_Shift_Del	T	-	p.S1695fs
STAD	TCGA-B7-5816-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073336	33073336	Frame_Shift_Del	G	-	p.P250fs
STAD	TCGA-B7-5816-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717769	89717770	Frame_Shift_Ins	-	A	p.L265fs
STAD	TCGA-B7-5816-01	KLHL25	ENST00000536947.1	chr15	86303847:86304242:86311247:86313051:86337996:86338100,	86311248	86313051	86311755	86311755	Frame_Shift_Del	G	-	p.L430fs
STAD	TCGA-B7-5816-01	RPS26	ENST00000552361.1,ENST00000356464.5	chr12	56436208:56436386:56437146:56437277:56437902:56438007,	56437147	56437277	56437254	56437254	Frame_Shift_Del	C	-	p.T96fs
STAD	TCGA-B7-5816-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1	chr16	19498538:19498648:19501716:19501890:19503471:19503550,	19501717	19501890	19501744	19501744	Frame_Shift_Del	T	-	p.P867fs
STAD	TCGA-B7-5816-01	PAM	ENST00000438793.3,ENST00000348126.2	chr5	102355493:102355547:102360834:102361038:102363885:102363926,102355493:102355547:102360834:102361038:102364590:102364814,102355493:102355547:102360834:102361038:102363888:102363942,	102360835	102361038	102361017	102361017	Frame_Shift_Del	A	-	p.W889X
STAD	TCGA-B7-5816-01	PAM	ENST00000504456.1	chr5	102355493:102355547:102360837:102361038:102363888:102363942,102355493:102355547:102360837:102361038:102363885:102363926,	102360838	102361038	102361017	102361017	Frame_Shift_Del	A	-	p.W889X
STAD	TCGA-B7-5816-01	PPA1	ENST00000610026.1,ENST00000373232.3	chr10	71966019:71966089:71968960:71969046:71969313:71969441,	71968961	71969046	71969022	71969022	Frame_Shift_Del	T	-	p.S222fs
STAD	TCGA-B7-5816-01	SLC25A26	ENST00000536651.1,ENST00000336733.6,ENST00000464350.2	chr3	66286967:66287124:66293626:66293736:66312474:66312579,66271489:66271553:66293626:66293736:66312474:66312579,	66293627	66293736	66293635	66293635	Frame_Shift_Del	T	-	p.A66fs
STAD	TCGA-B7-5816-01	KREMEN1	ENST00000407188.1,ENST00000400335.4,ENST00000327813.5,ENST00000400338.2	chr22	29494849:29494941:29517344:29517469:29521250:29521404,	29517345	29517469	29517407	29517407	Frame_Shift_Del	A	-	p.S138fs
STAD	TCGA-B7-5816-01	ZCCHC9	ENST00000407610.3	chr5	80597459:80597874:80600559:80600960:80604379:80604530,80597442:80597489:80600559:80600960:80604379:80604471,80597480:80597517:80600559:80600960:80604379:80604471,	80600560	80600960	80600661	80600661	Frame_Shift_Del	T	-	p.S28fs
STAD	TCGA-B7-5816-01	PHF3	ENST00000515594.1	chr6	64394029:64395812:64401626:64401933:64404470:64404580,64389900:64390062:64401626:64401933:64404470:64404580,	64401627	64401933	64401760	64401760	Frame_Shift_Del	A	-	p.D774fs
STAD	TCGA-B7-5816-01	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185234854:185234950:185236929:185237097:185241858:185241948,	185236930	185237097	185237031	185237032	Frame_Shift_Del	CT	-	p.262_262del
STAD	TCGA-B7-5816-01	FAM126A	ENST00000409763.1,ENST00000409923.1,ENST00000432176.2	chr7	23017887:23018067:23023562:23023664:23053543:23053693,23017887:23018067:23023562:23023664:23030679:23030758,	23023563	23023664	23023639	23023639	Frame_Shift_Del	T	-	p.N26fs
STAD	TCGA-B7-5816-01	GPR61	ENST00000469383.2	chr1	110082542:110082575:110085043:110087261:110087932:110087995,	110085044	110087261	110086217	110086217	Frame_Shift_Del	C	-	p.V191fs
STAD	TCGA-B7-5816-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981267	201981268	Frame_Shift_Ins	-	CT	p.P116fs
STAD	TCGA-B7-5816-01	GON4L	ENST00000368331.1,ENST00000437809.1,ENST00000271883.5	chr1	155733102:155733355:155734790:155736500:155737215:155737332,	155734791	155736500	155736390	155736390	Frame_Shift_Del	T	-	p.D959fs
STAD	TCGA-B7-5816-01	EXO1	ENST00000366548.3,ENST00000348581.5	chr1	242045217:242045319:242048615:242048809:242052766:242052891,	242048616	242048809	242048759	242048759	Frame_Shift_Del	G	-	p.P785fs
STAD	TCGA-B7-5816-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321244	152321244	Frame_Shift_Del	A	-	p.E1737fs
STAD	TCGA-B7-5816-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322259	27322259	Frame_Shift_Del	T	-	p.Q1235fs
STAD	TCGA-B7-5816-01	GRK4	ENST00000345167.6,ENST00000398052.4	chr4	3039100:3039238:3040102:3040240:3042298:3042454,	3040103	3040240	3040188	3040188	Frame_Shift_Del	C	-	p.T544fs
STAD	TCGA-B7-5816-01	PTK2	ENST00000519654.1,ENST00000517887.1,ENST00000519419.1,ENST00000524202.1,ENST00000521059.1,ENST00000340930.3,ENST00000395218.2,ENST00000522684.1,ENST00000519993.1,ENST00000535192.1	chr8	141810557:141810675:141813641:141813749:141828375:141828448,	141813642	141813749	141813659	141813659	Frame_Shift_Del	T	-	p.I342fs
STAD	TCGA-B7-5816-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862305	50862306	Frame_Shift_Ins	-	C	p.V333fs
STAD	TCGA-B7-5816-01	NFATC2	ENST00000609943.1,ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000396009.3,ENST00000610033.1	chr20	50052242:50052298:50071084:50071225:50090516:50090689,	50071085	50071225	50071134	50071134	Frame_Shift_Del	C	-	p.Q601fs
STAD	TCGA-B7-5816-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.H780fs
STAD	TCGA-B7-5816-01	CNOT10	ENST00000494439.1,ENST00000556853.1,ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000435630.1,ENST00000416457.1	chr3	32750188:32750312:32754718:32754861:32757716:32757803,	32754719	32754861	32754743	32754744	Frame_Shift_Ins	-	T	p.C212fs
STAD	TCGA-B7-5816-01	IGSF1	ENST00000370904.1,ENST00000370903.3,ENST00000370910.1,ENST00000361420.3	chrX	130409952:130410222:130410912:130411200:130411829:130412108,	130410913	130411200	130411114	130411114	Frame_Shift_Del	G	-	p.H808fs
STAD	TCGA-B7-5816-01	ATF7IP	ENST00000544627.1,ENST00000540793.1,ENST00000543189.1,ENST00000536444.1,ENST00000261168.4	chr12	14628823:14628902:14631250:14631406:14633936:14634119,	14631251	14631406	14631255	14631256	Frame_Shift_Ins	-	A	p.P982fs
STAD	TCGA-B7-5816-01	H2AFY	ENST00000511494.1,ENST00000423969.2,ENST00000511689.1,ENST00000510038.1,ENST00000512507.1,ENST00000304332.4,ENST00000360597.4,ENST00000506671.1,ENST00000312469.4,ENST00000451949.2	chr5	134670790:134670831:134678949:134679124:134681657:134681747,	134678950	134679124	134679016	134679016	Frame_Shift_Del	T	-	p.N296fs
STAD	TCGA-B7-5816-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45874790	45874790	Frame_Shift_Del	T	-	p.N749fs
STAD	TCGA-B7-5816-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514620	75514623	Frame_Shift_Del	TCTG	-	p.579_580del
STAD	TCGA-B7-5816-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000446180.1,ENST00000388738.3	chr4	123164152:123164223:123165008:123165182:123166174:123166295,	123165009	123165182	123165029	123165029	Frame_Shift_Del	A	-	p.E1588fs
STAD	TCGA-B7-5816-01	RUSC1	ENST00000462780.1,ENST00000368349.4,ENST00000292254.4,ENST00000368347.4,ENST00000490373.1,ENST00000368354.3,ENST00000471876.1,ENST00000368352.5	chr1	155296793:155296923:155297940:155298066:155300193:155300520,	155297941	155298066	155297994	155297994	Frame_Shift_Del	G	-	p.R823fs
STAD	TCGA-B7-5816-01	ACAT1	ENST00000527942.1,ENST00000299355.6,ENST00000524833.1,ENST00000265838.4,ENST00000531853.1,ENST00000531813.1	chr11	108002633:108002681:108004546:108004664:108004947:108004971,	108004547	108004664	108004588	108004588	Frame_Shift_Del	T	-	p.S54fs
STAD	TCGA-B7-5816-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73786098:73786269:73799388:73800551:73826527:73826648,	73799389	73800551	73800081	73800081	Frame_Shift_Del	A	-	p.L3691fs
STAD	TCGA-B7-5816-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470348	77470348	Frame_Shift_Del	T	-	p.G258fs
STAD	TCGA-B7-5816-01	DAP3	ENST00000462002.1,ENST00000471523.1,ENST00000343043.3,ENST00000368336.5,ENST00000496863.1,ENST00000471214.1,ENST00000463575.1	chr1	155686796:155686919:155691307:155691409:155695172:155695281,	155691308	155691409	155691351	155691351	Frame_Shift_Del	C	-	p.S71fs
STAD	TCGA-B7-5816-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788023	Frame_Shift_Del	T	-	p.V1116fs
STAD	TCGA-B7-5816-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64604504:64604701:64606658:64606791:64608058:64608241,	64606659	64606791	64606785	64606785	Frame_Shift_Del	T	-	p.N4990fs
STAD	TCGA-B7-5816-01	MCCC1	ENST00000486226.1	chr3	182804480:182804576:182810196:182810333:182812346:182812393,182808723:182808819:182810196:182810333:182812346:182812393,	182810197	182810333	182810260	182810260	Frame_Shift_Del	T	-	p.L71fs
STAD	TCGA-B7-5816-01	AAAS	ENST00000550286.1,ENST00000394384.3,ENST00000209873.4,ENST00000552876.1	chr12	53701273:53701497:53701628:53701713:53701835:53701917,	53701629	53701713	53701679	53701679	Frame_Shift_Del	G	-	p.Q456fs
STAD	TCGA-B7-5816-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133973252:133973318:133975238:133975319:133978804:133978942,	133975239	133975319	133975278	133975279	Frame_Shift_Ins	-	A	p.R1836fs
STAD	TCGA-BR-4368-01	STAU1	ENST00000371828.3,ENST00000340954.7,ENST00000371802.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47736518:47736665:47739628:47739772:47740911:47741124,	47739629	47739772	47739699	47739699	Frame_Shift_Del	T	-	p.K299fs
STAD	TCGA-BR-4368-01	STAU1	ENST00000371792.1	chr20	47736518:47736665:47739628:47739766:47740911:47741124,	47739629	47739766	47739699	47739699	Frame_Shift_Del	T	-	p.K299fs
STAD	TCGA-BR-4368-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573634	121573634	Frame_Shift_Del	A	-	p.E101fs
STAD	TCGA-BR-4368-01	FADS1	ENST00000542506.1,ENST00000433932.1,ENST00000350997.7	chr11	61574135:61574196:61578222:61578351:61578445:61578547,	61578223	61578351	61578343	61578343	Frame_Shift_Del	G	-	p.A266fs
STAD	TCGA-BR-4368-01	C3orf62	ENST00000436325.1	chr3	49311481:49311573:49313859:49314274:49314618:49314652,	49313860	49314274	49314258	49314258	Frame_Shift_Del	T	-	p.L17X
STAD	TCGA-BR-4368-01	GCH1	ENST00000543643.2	chr14	55309713:55309772:55310499:55310587:55312485:55312565,	55310500	55310587	55310530	55310530	Frame_Shift_Del	A	-	p.V229fs
STAD	TCGA-BR-4368-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748297	43748297	Frame_Shift_Del	G	-	p.Q837fs
STAD	TCGA-BR-4368-01	CHMP7	ENST00000397677.1,ENST00000313219.7	chr8	23104154:23104337:23106722:23106894:23112759:23112878,23104178:23104507:23106722:23106894:23112759:23112878,	23106723	23106894	23106785	23106785	Frame_Shift_Del	G	-	p.W121fs
STAD	TCGA-BR-4368-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864162	129864163	Frame_Shift_Ins	-	T	p.A541fs
STAD	TCGA-BR-4368-01	NDUFS4	ENST00000296684.5,ENST00000506974.1,ENST00000502423.1,ENST00000507026.1	chr5	52942062:52942235:52954380:52954454:52978947:52978968,	52954381	52954454	52954446	52954446	Frame_Shift_Del	A	-	p.E139fs
STAD	TCGA-BR-4368-01	SURF1	ENST00000371974.3,ENST00000437995.1	chr9	136221513:136221596:136221678:136221812:136223123:136223175,	136221679	136221812	136221753	136221754	Frame_Shift_Ins	-	T	p.A56fs
STAD	TCGA-BR-4368-01	TSPO	ENST00000583777.1,ENST00000396265.3	chr22	43547578:43547610:43557057:43557196:43558808:43559216,	43557058	43557196	43557100	43557101	Frame_Shift_Del	AG	-	p.75_75del
STAD	TCGA-BR-4368-01	LYAR	ENST00000343470.4,ENST00000452476.1	chr4	4269430:4269750:4270256:4270342:4275309:4275396,	4270257	4270342	4270269	4270270	Frame_Shift_Ins	-	T	p.K331fs
STAD	TCGA-BR-4368-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000446180.1,ENST00000388738.3	chr4	123164152:123164223:123165008:123165182:123166174:123166295,	123165009	123165182	123165029	123165029	Frame_Shift_Del	A	-	p.E1588fs
STAD	TCGA-BR-4368-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289119	31289120	Frame_Shift_Ins	-	C	p.H627fs
STAD	TCGA-BR-4368-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851665	71851665	Frame_Shift_Del	G	-	p.K144fs
STAD	TCGA-BR-4368-01	USP33	ENST00000370793.1,ENST00000370792.3,ENST00000370794.3,ENST00000524536.1,ENST00000357428.1	chr1	78201740:78201843:78204949:78205102:78206561:78206619,	78204950	78205102	78205025	78205026	Frame_Shift_Ins	-	A	p.L123fs
STAD	TCGA-BR-4368-01	TRIM46	ENST00000368385.4,ENST00000392451.2,ENST00000474430.1,ENST00000334634.4,ENST00000368383.3	chr1	155146354:155146505:155147861:155148123:155148363:155148707,	155147862	155148123	155148062	155148062	Frame_Shift_Del	C	-	p.S88fs
STAD	TCGA-BR-4368-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1144fs
STAD	TCGA-BR-4368-01	P4HTM	ENST00000343546.4	chr3	49042293:49042603:49043150:49043300:49043496:49043620,	49043151	49043300	49043192	49043193	Frame_Shift_Ins	-	C	p.V413fs
STAD	TCGA-BR-4368-01	SULF2	ENST00000361612.4,ENST00000495544.1,ENST00000359930.4,ENST00000484875.1	chr20	46288440:46288474:46290516:46290640:46291813:46291956,	46290517	46290640	46290538	46290538	Frame_Shift_Del	G	-	p.R825fs
STAD	TCGA-BR-4368-01	NMT2	ENST00000378165.4	chr10	15177272:15177417:15183420:15183556:15210501:15210627,	15183421	15183556	15183500	15183500	Frame_Shift_Del	T	-	p.K56fs
STAD	TCGA-BR-4368-01	TRAPPC13	ENST00000438419.2,ENST00000399438.3,ENST00000505553.1,ENST00000504243.1,ENST00000512009.1,ENST00000231526.4,ENST00000508304.1,ENST00000545191.1,ENST00000504751.1	chr5	64942881:64943009:64946636:64946709:64948327:64948372,	64946637	64946709	64946674	64946675	Frame_Shift_Ins	-	A	p.E156fs
STAD	TCGA-BR-4368-01	TFAP2A	ENST00000466073.1	chr6	10400680:10400822:10402724:10402843:10404740:10404827,10398920:10398938:10402724:10402843:10404740:10404827,	10402725	10402843	10402804	10402804	Frame_Shift_Del	T	-	p.L269fs
STAD	TCGA-BR-4368-01	PTPN4	ENST00000433888.1	chr2	120672754:120672818:120677644:120677817:120684173:120684242,120672754:120672818:120677644:120677817:120689999:120690125,	120677645	120677817	120677773	120677773	Frame_Shift_Del	T	-	p.N319fs
STAD	TCGA-BR-4368-01	SPAG11A	ENST00000326558.5	chr8	7706212:7706365:7718167:7718245:7721022:7721319,	7718168	7718245	7718228	7718228	Frame_Shift_Del	T	-	p.L92fs
STAD	TCGA-BR-4368-01	ROBO4	ENST00000306534.3,ENST00000533054.1,ENST00000532216.1	chr11	124756359:124756718:124756872:124757109:124757253:124757395,	124756873	124757109	124757029	124757029	Frame_Shift_Del	G	-	p.P760fs
STAD	TCGA-BR-4368-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46120030:46120085:46121398:46122553:46135263:46135411,	46121399	46122553	46121425	46121425	Frame_Shift_Del	G	-	p.Q616fs
STAD	TCGA-BR-4368-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114275575	114275575	Frame_Shift_Del	A	-	p.E1934fs
STAD	TCGA-BR-4368-01	CD28	ENST00000324106.8	chr2	204571246:204571340:204591355:204591712:204594370:204594495,204571415:204571471:204591355:204591712:204594370:204594495,	204591356	204591712	204591543	204591543	Frame_Shift_Del	A	-	p.S80X
STAD	TCGA-BR-4368-01	VPS18	ENST00000220509.5	chr15	41191104:41191196:41191341:41193212:41194813:41195059,	41191342	41193212	41191837	41191837	Frame_Shift_Del	C	-	p.T274fs
STAD	TCGA-BR-4368-01	TRPS1	ENST00000519076.1,ENST00000520276.1,ENST00000220888.5,ENST00000395715.3	chr8	116430557:116430680:116599227:116599831:116616099:116616277,	116599228	116599831	116599323	116599323	Frame_Shift_Del	C	-	p.A869fs
STAD	TCGA-BR-4368-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693723	Frame_Shift_Del	TT	-	p.690_690del
STAD	TCGA-BR-4368-01	TMEFF2	ENST00000392314.1,ENST00000272771.5,ENST00000409056.3	chr2	193044393:193044420:193049079:193049209:193056605:193056715,	193049080	193049209	193049182	193049183	Frame_Shift_Del	CA	-	p.104_104del
STAD	TCGA-BR-4368-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-BR-4368-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-BR-4368-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
STAD	TCGA-BR-4368-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322259	27322259	Frame_Shift_Del	T	-	p.Q1235fs
STAD	TCGA-BR-4368-01	SLX4	ENST00000294008.3	chr16	3650979:3651192:3652118:3652308:3656474:3656699,	3652119	3652308	3652290	3652290	Frame_Shift_Del	G	-	p.P260fs
STAD	TCGA-BR-4368-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9048910:9049108:9051430:9051592,	9048911	9049108	9048996	9048996	Frame_Shift_Del	G	-	p.K816fs
STAD	TCGA-BR-4368-01	PBRM1	ENST00000296302.7	chr3	52584762:52584833:52588739:52588895:52595782:52595984,52584762:52584833:52588739:52588895:52592264:52592429,	52588740	52588895	52588798	52588798	Frame_Shift_Del	C	-	p.P1411fs
STAD	TCGA-BR-4292-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499816	42499816	Frame_Shift_Del	A	-	p.L223fs
STAD	TCGA-BR-4292-01	KIF9	ENST00000335044.2,ENST00000452770.2,ENST00000443784.1,ENST00000265529.3,ENST00000487440.1,ENST00000444589.2	chr3	47308669:47308753:47315041:47315148:47316814:47316980,47312726:47312951:47315041:47315148:47316814:47316980,	47315042	47315148	47315092	47315092	Frame_Shift_Del	C	-	p.A106fs
STAD	TCGA-BR-4292-01	TNPO1	ENST00000505082.1	chr5	72168494:72168547:72173054:72173173:72178293:72178354,	72173055	72173173	72173171	72173174	Frame_Shift_Del	TAAG	-	p.306_307del
STAD	TCGA-BR-4292-01	SLC25A45	ENST00000294187.6,ENST00000530936.1,ENST00000398802.1,ENST00000527174.1,ENST00000526259.1,ENST00000417511.2,ENST00000526898.1	chr11	65144803:65144894:65146846:65147032:65147337:65147409,65144532:65144547:65146846:65147032:65147337:65147409,	65146847	65147032	65146856	65146856	Frame_Shift_Del	C	-	p.F111fs
STAD	TCGA-BR-4292-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046886	17046886	Frame_Shift_Del	C	-	p.A351fs
STAD	TCGA-BR-4292-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000544260.1,ENST00000521772.1,ENST00000381869.3,ENST00000262102.6,ENST00000518713.1,ENST00000381861.3,ENST00000517413.1	chr8	17512072:17512175:17513371:17513574:17532694:17532761,	17513372	17513574	17513478	17513479	Frame_Shift_Ins	-	T	p.T1001fs
STAD	TCGA-BR-4292-01	TRIP4	ENST00000557834.1	chr15	64680060:64680247:64686205:64686314:64687596:64687730,	64686206	64686314	64686305	64686305	Frame_Shift_Del	A	-	p.F87fs
STAD	TCGA-BR-4292-01	GOLT1A	ENST00000308302.3	chr1	204168327:204168386:204170760:204170939:204172023:204172115,	204170761	204170939	204170836	204170836	Frame_Shift_Del	C	-	p.G74fs
STAD	TCGA-BR-4292-01	FUT10	ENST00000327671.5,ENST00000524021.1,ENST00000518672.1	chr8	33230161:33230322:33246480:33247316:33310733:33311028,	33246481	33247316	33246853	33246853	Frame_Shift_Del	A	-	p.E281fs
STAD	TCGA-BR-4292-01	PDE8A	ENST00000310298.4,ENST00000394553.1,ENST00000557957.1	chr15	85626786:85626875:85634274:85634412:85641178:85641267,85632568:85632647:85634274:85634412:85641178:85641267,	85634275	85634412	85634360	85634360	Frame_Shift_Del	A	-	p.E267fs
STAD	TCGA-BR-4292-01	CREB3L4	ENST00000479010.1,ENST00000368603.1,ENST00000368601.1	chr1	153940739:153940786:153940997:153941175:153941405:153941444,	153940998	153941175	153941173	153941174	Frame_Shift_Del	TG	-	p.57_58del
STAD	TCGA-BR-4292-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934780	153934781	Frame_Shift_Ins	-	C	p.G78fs
STAD	TCGA-BR-4292-01	ZNF324	ENST00000196482.3	chr19	58978462:58978550:58980546:58980673:58981094:58981211,	58980547	58980673	58980596	58980596	Frame_Shift_Del	G	-	p.W15fs
STAD	TCGA-BR-4292-01	RIMS2	ENST00000262231.10,ENST00000515551.1,ENST00000507677.1,ENST00000507740.1,ENST00000504942.2,ENST00000436393.2,ENST00000408894.2,ENST00000406091.3	chr8	104924359:104924400:104927722:104927822:104928641:104928765,	104927723	104927822	104927779	104927779	Frame_Shift_Del	A	-	p.V623fs
STAD	TCGA-BR-4292-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459254	27459254	Frame_Shift_Del	A	-	p.C455X
STAD	TCGA-BR-4292-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246941	56246941	Frame_Shift_Del	A	-	p.L356fs
STAD	TCGA-BR-4292-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693723	Frame_Shift_Del	TT	-	p.690_690del
STAD	TCGA-BR-4292-01	PLA2G7	ENST00000274793.7,ENST00000537365.1	chr6	46675727:46675898:46677063:46677155:46678281:46678395,	46677064	46677155	46677134	46677134	Frame_Shift_Del	T	-	p.I267fs
STAD	TCGA-BR-4292-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542775	24542776	Frame_Shift_Ins	-	T	p.Y79fs
STAD	TCGA-BR-4292-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107892	14107893	Frame_Shift_Ins	-	T	p.A1201fs
STAD	TCGA-BR-4292-01	GDAP1	ENST00000220822.7	chr8	75262678:75262813:75263508:75263701:75272371:75272483,	75263509	75263701	75263642	75263642	Frame_Shift_Del	A	-	p.E84fs
STAD	TCGA-BR-4292-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722672:722805:723240:723353:724723:724829,	723241	723353	723305	723305	Frame_Shift_Del	C	-	p.T469fs
STAD	TCGA-BR-4292-01	MOV10L1	ENST00000395858.3,ENST00000262794.5,ENST00000545383.1,ENST00000540615.1,ENST00000395843.1	chr22	50555585:50555780:50558930:50559045:50563820:50563998,	50558931	50559045	50559005	50559005	Frame_Shift_Del	A	-	p.Q510fs
STAD	TCGA-BR-4292-01	ADCY10	ENST00000367851.4	chr1	167868660:167868866:167870899:167871043:167871253:167871292,	167870900	167871043	167870995	167870995	Frame_Shift_Del	T	-	p.N114fs
STAD	TCGA-BR-4292-01	ADCY10	ENST00000367848.1	chr1	167868660:167868866:167870899:167871080:167871253:167871292,	167870900	167871080	167870995	167870995	Frame_Shift_Del	T	-	p.N114fs
STAD	TCGA-BR-4292-01	SDAD1	ENST00000513089.1,ENST00000395711.4,ENST00000507396.1,ENST00000395710.1,ENST00000356260.5	chr4	76891461:76891531:76892509:76892611:76894469:76894544,	76892510	76892611	76892547	76892547	Frame_Shift_Del	T	-	p.N259fs
STAD	TCGA-BR-4292-01	EXO1	ENST00000366548.3,ENST00000518483.1,ENST00000348581.5	chr1	242042341:242042645:242045217:242045319:242048615:242048809,	242045218	242045319	242045292	242045292	Frame_Shift_Del	A	-	p.S728X
STAD	TCGA-BR-4292-01	DCSTAMP	ENST00000297581.2	chr8	105361664:105361809:105367104:105367413:105368351:105368461,	105367105	105367413	105367351	105367351	Frame_Shift_Del	A	-	p.L425fs
STAD	TCGA-BR-4292-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000423620.2	chr8	95680176:95680478:95683680:95683899:95686535:95686722,	95683681	95683899	95683841	95683842	Frame_Shift_Ins	-	G	p.L465fs
STAD	TCGA-BR-4292-01	MEIS2	ENST00000338564.5,ENST00000219869.9,ENST00000557796.2,ENST00000607277.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000397624.3,ENST00000340545.5,ENST00000382766.2,ENST00000559561.1,ENST00000561208.1,ENST00000424352.2	chr15	37242524:37242601:37329014:37329160:37375971:37376086,	37329015	37329160	37329090	37329090	Frame_Shift_Del	T	-	p.R276fs
STAD	TCGA-BR-4292-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000584118.1,ENST00000584207.1,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73089683:73089930:73094132:73094276:73096101:73096277,	73094133	73094276	73094188	73094188	Frame_Shift_Del	G	-	p.L85fs
STAD	TCGA-BR-4292-01	NETO2	ENST00000303155.5,ENST00000562435.1	chr16	47117524:47117712:47120136:47120250:47143393:47143622,	47120137	47120250	47120147	47120148	Frame_Shift_Ins	-	T	p.N329fs
STAD	TCGA-BR-4292-01	SLC25A26	ENST00000536651.1,ENST00000336733.6,ENST00000464350.2	chr3	66286967:66287124:66293626:66293736:66312474:66312579,66271489:66271553:66293626:66293736:66312474:66312579,	66293627	66293736	66293635	66293635	Frame_Shift_Del	T	-	p.A66fs
STAD	TCGA-BR-4292-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000327681.6	chr6	99891440:99891538:99893672:99894339:99912479:99912512,	99893673	99894339	99893879	99893879	Frame_Shift_Del	A	-	p.L590fs
STAD	TCGA-BR-4292-01	ANK1	ENST00000518715.1	chr8	41521176:41521260:41522322:41522427:41523050:41523348,	41522323	41522427	41522393	41522394	Frame_Shift_Ins	-	C	p.E50fs
STAD	TCGA-BR-4292-01	BNC2	ENST00000545497.1,ENST00000380667.2,ENST00000380672.4	chr9	16418986:16419647:16435552:16437522:16552527:16552763,	16435553	16437522	16436375	16436375	Frame_Shift_Del	G	-	p.P606fs
STAD	TCGA-BR-4292-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-BR-4292-01	CELF1	ENST00000532048.1,ENST00000310513.5,ENST00000358597.3,ENST00000539455.1,ENST00000395292.2,ENST00000531165.1,ENST00000361904.3,ENST00000539254.1,ENST00000395290.2	chr11	47493882:47493909:47494639:47494783:47496887:47497009,	47494640	47494783	47494744	47494745	Frame_Shift_Ins	-	G	p.Q436fs
STAD	TCGA-BR-4292-01	EML4	ENST00000401738.3,ENST00000318522.5	chr2	42483640:42483770:42488260:42488434:42490317:42490446,	42488261	42488434	42488302	42488302	Frame_Shift_Del	A	-	p.E127fs
STAD	TCGA-BR-4292-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253746	55253746	Frame_Shift_Del	T	-	p.I497fs
STAD	TCGA-BR-4292-01	CDK2	ENST00000354056.4,ENST00000440311.2,ENST00000556464.1	chr12	56361832:56361953:56362561:56362732:56363258:56363360,56361832:56361953:56362561:56362732:56364827:56364871,	56362562	56362732	56362650	56362650	Frame_Shift_Del	T	-	p.I135fs
STAD	TCGA-BR-4292-01	SULT1A4	ENST00000569544.1	chr16	29472958:29473059:29473173:29473271:29474665:29474792,	29473174	29473271	29473200	29473200	Frame_Shift_Del	C	-	p.P100fs
STAD	TCGA-BR-4292-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728643	100728644	Frame_Shift_Ins	-	A	p.E228fs
STAD	TCGA-BR-4292-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203509	135203509	Frame_Shift_Del	T	-	p.K1159fs
STAD	TCGA-BR-4292-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577801	14577802	Frame_Shift_Ins	-	A	p.E318fs
STAD	TCGA-BR-4292-01	SLC12A6	ENST00000458406.2,ENST00000559664.1,ENST00000397707.2,ENST00000397702.2,ENST00000290209.5,ENST00000561080.1,ENST00000560332.1,ENST00000560611.1,ENST00000558589.1,ENST00000558667.1,ENST00000354181.3,ENST00000559523.1	chr15	34548436:34548484:34549842:34549989:34551013:34551145,	34549843	34549989	34549916	34549916	Frame_Shift_Del	A	-	p.L206fs
STAD	TCGA-BR-4292-01	LYPLA2	ENST00000495365.1,ENST00000374514.3,ENST00000374502.3,ENST00000374503.3,ENST00000421070.1,ENST00000400061.1,ENST00000374505.2	chr1	24119146:24119250:24119497:24119529:24119640:24119706,	24119498	24119529	24119502	24119502	Frame_Shift_Del	T	-	p.I28fs
STAD	TCGA-BR-4292-01	GFOD2	ENST00000268797.7	chr16	67709802:67709956:67719359:67719705:67753065:67753227,	67719360	67719705	67719395	67719395	Frame_Shift_Del	G	-	p.P75fs
STAD	TCGA-BR-4292-01	ILDR2	ENST00000528703.1,ENST00000525740.1,ENST00000526687.1,ENST00000529071.1,ENST00000271417.3	chr1	166888102:166888627:166889943:166890616:166891829:166892046,	166889944	166890616	166890564	166890564	Frame_Shift_Del	C	-	p.V422fs
STAD	TCGA-BR-4292-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578360	14578360	Frame_Shift_Del	A	-	p.E504fs
STAD	TCGA-BR-4292-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50600840:50600957:50605329:50605502:50606659:50606777,	50605330	50605502	50605444	50605445	Frame_Shift_Ins	-	T	p.K948fs
STAD	TCGA-BR-4292-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555143	38555144	Frame_Shift_Del	AA	-	p.1562_1562del
STAD	TCGA-BR-4292-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-BR-4292-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406040	91406040	Frame_Shift_Del	T	-	p.R291fs
STAD	TCGA-BR-4292-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000522085.1,ENST00000521120.1,ENST00000520064.2,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50835372:50835426:50847242:50847455:50848096:50848200,	50847243	50847455	50847266	50847267	Frame_Shift_Ins	-	T	p.T276fs
STAD	TCGA-BR-4292-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000327520.7,ENST00000542921.1,ENST00000399251.1,ENST00000497922.1	chr10	64949046:64949206:64950653:64950868:64952697:64952851,	64950654	64950868	64950825	64950828	Frame_Shift_Del	TCTT	-	p.2040_2041del
STAD	TCGA-BR-4292-01	TRMT10B	ENST00000297994.3	chr9	37761899:37762114:37763625:37763750:37768072:37768160,37762573:37762682:37763625:37763750:37768072:37768160,	37763626	37763750	37763633	37763633	Frame_Shift_Del	C	-	p.C101fs
STAD	TCGA-BR-4292-01	TRMT10B	ENST00000538370.1	chr9	37762573:37762682:37763625:37763862:37768072:37768160,37761899:37762114:37763625:37763862:37768072:37768160,	37763626	37763862	37763633	37763633	Frame_Shift_Del	C	-	p.C101fs
STAD	TCGA-BR-4292-01	RERE	ENST00000480342.1,ENST00000337907.3,ENST00000400907.2,ENST00000400908.2	chr1	8617476:8617582:8674619:8674745:8684368:8684439,	8674620	8674745	8674689	8674690	Frame_Shift_Ins	-	G	p.P151fs
STAD	TCGA-BR-4292-01	CHST9	ENST00000581714.1,ENST00000284224.8	chr18	24495742:24497314:24524292:24524330:24604079:24604121,	24524293	24524330	24524315	24524316	Frame_Shift_Ins	-	T	p.I73fs
STAD	TCGA-BR-4292-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107246	14107246	Frame_Shift_Del	C	-	p.P985fs
STAD	TCGA-BR-4292-01	SLC27A3	ENST00000483574.2,ENST00000368661.3,ENST00000484014.1	chr1	153748442:153748640:153748993:153749203:153749537:153749696,	153748994	153749203	153749150	153749150	Frame_Shift_Del	C	-	p.S322fs
STAD	TCGA-BR-4292-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-BR-4292-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-BR-4292-01	PRDX3	ENST00000298510.2	chr10	120933962:120934104:120936532:120936665:120938266:120938345,	120936533	120936665	120936633	120936634	Frame_Shift_Ins	-	C	p.G23fs
STAD	TCGA-BR-4292-01	G2E3	ENST00000544007.1	chr14	31070975:31071100:31071204:31071337:31077093:31077125,	31071205	31071337	31071214	31071214	Frame_Shift_Del	A	-	p.Q296fs
STAD	TCGA-BR-4292-01	DOT1L	ENST00000452696.1	chr19	2189730:2189794:2191082:2191239:2193687:2193782,	2191083	2191239	2191141	2191141	Frame_Shift_Del	C	-	p.S132fs
STAD	TCGA-BR-4292-01	DOT1L	ENST00000398665.3	chr19	2189730:2189794:2191010:2191239:2193687:2193782,	2191011	2191239	2191141	2191141	Frame_Shift_Del	C	-	p.S132fs
STAD	TCGA-BR-4292-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469778	161469778	Frame_Shift_Del	A	-	p.K158fs
STAD	TCGA-BR-4292-01	ADSSL1	ENST00000555486.1,ENST00000557582.1,ENST00000332972.5,ENST00000553540.1,ENST00000330877.2	chr14	105207175:105207257:105207453:105207580:105208184:105208338,	105207454	105207580	105207521	105207522	Frame_Shift_Ins	-	C	p.G288fs
STAD	TCGA-HU-A4GU-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.L137fs
STAD	TCGA-HU-A4GU-01	B4GALT2	ENST00000372324.1	chr1	44445107:44445183:44446780:44447145:44447360:44447595,	44446781	44447145	44446847	44446847	Frame_Shift_Del	G	-	p.L34fs
STAD	TCGA-HU-A4GU-01	MARCH6	ENST00000511802.1,ENST00000505253.1,ENST00000449913.2,ENST00000510792.1,ENST00000503788.1,ENST00000274140.5	chr5	10414544:10414614:10415599:10415781:10417381:10417516,	10415600	10415781	10415634	10415634	Frame_Shift_Del	G	-	p.T667fs
STAD	TCGA-HU-A4GU-01	MARCH6	ENST00000512449.1	chr5	10414544:10414614:10415584:10415781:10417381:10417516,	10415585	10415781	10415634	10415634	Frame_Shift_Del	G	-	p.T667fs
STAD	TCGA-HU-A4GU-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3743fs
STAD	TCGA-HU-A4GU-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3743fs
STAD	TCGA-HU-A4GU-01	ASCC1	ENST00000527593.1,ENST00000317168.6,ENST00000526751.1,ENST00000524829.1,ENST00000317126.4,ENST00000394919.1,ENST00000530461.1,ENST00000545550.1	chr10	73963199:73963282:73970489:73970589:73972944:73973035,	73970490	73970589	73970504	73970504	Frame_Shift_Del	G	-	p.S67fs
STAD	TCGA-HU-A4GU-01	ARSA	ENST00000453344.2	chr22	51065261:51065480:51065593:51065834:51066373:51066598,	51065594	51065834	51065640	51065641	Frame_Shift_Ins	-	G	p.H140fs
STAD	TCGA-HU-A4GU-01	CDC40	ENST00000368932.1,ENST00000307731.1,ENST00000606893.1	chr6	110547369:110547446:110550034:110550179:110551156:110551536,	110550035	110550179	110550119	110550119	Frame_Shift_Del	T	-	p.I501fs
STAD	TCGA-HU-A4GU-01	PAPOLA	ENST00000392990.2,ENST00000557471.1,ENST00000554130.1,ENST00000216277.8,ENST00000557320.1,ENST00000553689.1	chr14	96968894:96968937:96986391:96986565:96987342:96987409,	96986392	96986565	96986535	96986535	Frame_Shift_Del	T	-	p.V51fs
STAD	TCGA-HU-A4GU-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37114280:37114373:37116514:37116607,37107714:37107816:37114280:37114373:37116514:37116607,	37114281	37114373	37114286	37114286	Frame_Shift_Del	T	-	p.I487fs
STAD	TCGA-HU-A4GU-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6027156	6027157	Frame_Shift_Ins	-	T	p.D414fs
STAD	TCGA-HU-A4GU-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282887	47282887	Frame_Shift_Del	C	-	p.S204fs
STAD	TCGA-HU-A4GU-01	PIK3CB	ENST00000462898.1,ENST00000289153.2,ENST00000477593.1,ENST00000493568.1	chr3	138426000:138426131:138431049:138431146:138433309:138433328,	138431050	138431146	138431111	138431111	Frame_Shift_Del	A	-	p.D447fs
STAD	TCGA-HU-A4GU-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417800	40417800	Frame_Shift_Del	G	-	p.R429fs
STAD	TCGA-HU-A4GU-01	GPC2	ENST00000480087.1,ENST00000471050.1,ENST00000292377.2,ENST00000490629.1	chr7	99769812:99769840:99771457:99771620:99772307:99772347,	99771458	99771620	99771469	99771469	Frame_Shift_Del	C	-	p.G294fs
STAD	TCGA-HU-A4GU-01	PAN2	ENST00000440411.3,ENST00000425394.2,ENST00000257931.5,ENST00000548043.1,ENST00000547226.1	chr12	56712099:56712218:56712871:56712965:56713091:56713273,	56712872	56712965	56712865	56712876	Frame_Shift_Del	AACTCACCCAGA	-	p.1125_1126del
STAD	TCGA-HU-A4GU-01	SLC2A13	ENST00000280871.4	chr12	40158538:40158660:40223904:40224030:40258563:40258684,	40223905	40224030	40223908	40223908	Frame_Shift_Del	C	-	p.G481fs
STAD	TCGA-HU-A4GU-01	CCDC38	ENST00000344280.3	chr12	96284609:96284708:96288766:96288924:96292162:96292243,	96288767	96288924	96288870	96288870	Frame_Shift_Del	A	-	p.L224fs
STAD	TCGA-HU-A4GU-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214819474	214819474	Frame_Shift_Del	A	-	p.L2187fs
STAD	TCGA-HU-A4GU-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-HU-A4GU-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509528	102509529	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-HU-A4GU-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323838	235323838	Frame_Shift_Del	T	-	p.K118fs
STAD	TCGA-HU-A4GU-01	PTER	ENST00000423462.2	chr10	16479361:16479489:16526335:16526815:16528350:16528616,16478982:16479046:16526335:16526815:16528350:16528616,	16526336	16526815	16526567	16526567	Frame_Shift_Del	A	-	p.Q61fs
STAD	TCGA-HU-A4GU-01	TDP2	ENST00000545995.1,ENST00000341060.3,ENST00000378198.4	chr6	24651214:24651297:24653210:24653381:24654639:24654758,	24653211	24653381	24653291	24653291	Frame_Shift_Del	T	-	p.M243fs
STAD	TCGA-HU-A4GU-01	NOMO3	ENST00000399336.4,ENST00000575225.1,ENST00000574157.1,ENST00000538468.1,ENST00000263012.6,ENST00000572932.1	chr16	16376872:16376983:16379261:16379363:16381599:16381677,	16379262	16379363	16379338	16379339	Frame_Shift_Ins	-	C	p.F1100fs
STAD	TCGA-HU-A4GU-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618272	201618272	Frame_Shift_Del	C	-	p.T159fs
STAD	TCGA-HU-A4GU-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351425	134351425	Frame_Shift_Del	C	-	p.R1303fs
STAD	TCGA-HU-A4GU-01	ZMIZ1	ENST00000334512.5	chr10	80975925:80976031:81036937:81037082:81049531:81049646,	81036938	81037082	81037036	81037036	Frame_Shift_Del	C	-	p.Q126fs
STAD	TCGA-HU-A4GU-01	SYT12	ENST00000525149.1	chr11	66797592:66797649:66802115:66802309:66807281:66807347,66797905:66798030:66802115:66802309:66807281:66807347,	66802116	66802309	66802126	66802126	Frame_Shift_Del	C	-	p.S15fs
STAD	TCGA-HU-A4GU-01	FZD6	ENST00000522484.1	chr8	104330817:104331014:104336708:104337726:104341882:104342199,	104336709	104337726	104337204	104337204	Frame_Shift_Del	T	-	p.Y290fs
STAD	TCGA-HU-A4GU-01	TECTA	ENST00000264037.2,ENST00000392793.1	chr11	120989014:120989427:120996010:120996581:120998460:120999053,	120996011	120996581	120996203	120996203	Frame_Shift_Del	A	-	p.N465fs
STAD	TCGA-HU-A4GU-01	CA1	ENST00000517590.1,ENST00000517618.1,ENST00000523858.1,ENST00000521846.1,ENST00000523022.1,ENST00000523953.1,ENST00000542576.1,ENST00000522814.1,ENST00000522579.1,ENST00000256119.5,ENST00000431316.1,ENST00000432364.2,ENST00000522662.1	chr8	86249230:86249292:86250480:86250678:86253827:86253888,	86250481	86250678	86250523	86250524	Frame_Shift_Ins	-	C	p.H65fs
STAD	TCGA-HU-A4GU-01	AP1M1	ENST00000291439.3,ENST00000590756.1,ENST00000541844.1,ENST00000429941.2	chr19	16318829:16318960:16319840:16319988:16337231:16337358,	16319841	16319988	16319879	16319879	Frame_Shift_Del	C	-	p.A146fs
STAD	TCGA-HU-A4GU-01	PLXNB2	ENST00000449103.1	chr22	50727414:50727571:50727945:50729026:50733147:50733205,50727414:50727571:50727945:50729026:50733154:50733207,	50727946	50729026	50728019	50728019	Frame_Shift_Del	G	-	p.T332fs
STAD	TCGA-HU-A4GU-01	OPTN	ENST00000378757.2,ENST00000378748.3,ENST00000378747.3,ENST00000378764.2,ENST00000263036.5,ENST00000378752.3	chr10	13167417:13167567:13167945:13168039:13169744:13169903,	13167946	13168039	13168010	13168010	Frame_Shift_Del	A	-	p.L404fs
STAD	TCGA-HU-A4GU-01	VPS13B	ENST00000355155.1,ENST00000358544.2,ENST00000441350.2,ENST00000496144.1,ENST00000395996.1,ENST00000357162.2	chr8	100025987:100026163:100050650:100050794:100108539:100108660,	100050651	100050794	100050671	100050671	Frame_Shift_Del	T	-	p.T56fs
STAD	TCGA-HU-A4GU-01	ABCB1	ENST00000543898.1,ENST00000265724.3	chr7	87160609:87160813:87165773:87165857:87168583:87168661,	87165774	87165857	87165829	87165829	Frame_Shift_Del	T	-	p.N809fs
STAD	TCGA-HU-A4GU-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182636	59182637	Frame_Shift_Del	CT	-	p.641_642del
STAD	TCGA-HU-A4GU-01	ZMIZ2	ENST00000309315.4,ENST00000433667.1,ENST00000441627.1	chr7	44798879:44799059:44799749:44799827:44800023:44800192,	44799750	44799827	44799789	44799789	Frame_Shift_Del	G	-	p.N344fs
STAD	TCGA-HU-A4GU-01	GPSM3	ENST00000375040.3,ENST00000375043.3	chr6	32159485:32159647:32159924:32160027:32160248:32160293,32159485:32159685:32159924:32160027:32160248:32160293,	32159925	32160027	32160020	32160020	Frame_Shift_Del	G	-	p.P17fs
STAD	TCGA-HU-A4GU-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001305	11001305	Frame_Shift_Del	C	-	p.S652fs
STAD	TCGA-HU-A4GU-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001305	11001305	Frame_Shift_Del	C	-	p.S652fs
STAD	TCGA-HU-A4GU-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.F623fs
STAD	TCGA-HU-A4GU-01	TCF7	ENST00000524342.1	chr5	133477906:133477995:133478411:133479168:133479282:133479331,	133478412	133479168	133478443	133478489	Frame_Shift_Del	GAGGCCAAGAAGCCAACCATCAAGAAGCCCCTCAATGCCTTCATGCT	-	p.262_278del
STAD	TCGA-HU-A4GU-01	TCF7	ENST00000522653.1	chr5	133477906:133477995:133478411:133478791:133479282:133479331,	133478412	133478791	133478443	133478489	Frame_Shift_Del	GAGGCCAAGAAGCCAACCATCAAGAAGCCCCTCAATGCCTTCATGCT	-	p.262_278del
STAD	TCGA-D7-A4YV-01	PLEKHA6	ENST00000414478.1	chr1	204230465:204230636:204234069:204234170:204236602:204236675,	204234070	204234170	204234135	204234135	Frame_Shift_Del	G	-	p.L106fs
STAD	TCGA-D7-A4YV-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-D7-A4YV-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-D7-A4YV-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
STAD	TCGA-D7-A4YV-01	SNRPA1	ENST00000560856.1,ENST00000558036.1,ENST00000558020.1,ENST00000559309.1	chr15	101832166:101832245:101833229:101833377:101835301:101835408,	101833230	101833377	101833235	101833236	Frame_Shift_Del	TC	-	p.75_76del
STAD	TCGA-D7-A4YV-01	PPFIBP1	ENST00000540114.1,ENST00000542629.1,ENST00000537927.1,ENST00000318304.8	chr12	27809548:27809663:27813816:27813878:27817294:27817370,	27813817	27813878	27813828	27813829	Frame_Shift_Ins	-	A	p.Q306fs
STAD	TCGA-D7-A4YV-01	SF1	ENST00000334944.5,ENST00000413951.1,ENST00000227503.9,ENST00000432725.1,ENST00000433274.2,ENST00000377387.1,ENST00000377394.3,ENST00000377390.3	chr11	64537851:64537880:64540901:64540977:64543969:64544098,	64540902	64540977	64540917	64540917	Frame_Shift_Del	G	-	p.P199fs
STAD	TCGA-D7-A4YV-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186673640	186673640	Frame_Shift_Del	T	-	p.I6625fs
STAD	TCGA-D7-A4YV-01	CLCNKB	ENST00000375679.4,ENST00000375667.3	chr1	16377972:16378042:16378204:16378315:16378692:16378906,	16378205	16378315	16378297	16378297	Frame_Shift_Del	G	-	p.P463fs
STAD	TCGA-D7-A4YV-01	U2AF2	ENST00000308924.4,ENST00000450554.2	chr19	56172403:56172555:56173867:56173984:56174971:56175110,	56173868	56173984	56173906	56173906	Frame_Shift_Del	G	-	p.L175fs
STAD	TCGA-D7-A4YV-01	RARS2	ENST00000369536.5	chr6	88231181:88231242:88234274:88234370:88239259:88239366,	88234275	88234370	88234285	88234286	Frame_Shift_Del	AG	-	p.322_322del
STAD	TCGA-D7-A4YV-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660979	3660980	Frame_Shift_Ins	-	GG	p.H227fs
STAD	TCGA-D7-A4YV-01	TAL1	ENST00000371884.2,ENST00000294339.3	chr1	47689743:47689770:47691114:47691561:47694867:47695023,	47691115	47691561	47691474	47691475	Frame_Shift_Ins	-	G	p.P29fs
STAD	TCGA-D7-A4YV-01	FARSA	ENST00000586280.1,ENST00000588965.1,ENST00000314606.4,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13039568:13039661:13041036:13041155:13041242:13041341,	13041037	13041155	13041103	13041103	Frame_Shift_Del	C	-	p.G146fs
STAD	TCGA-D7-A4YV-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71797728:71797871:71801327:71801501:71816722:71816816,	71801328	71801501	71801492	71801492	Frame_Shift_Del	G	-	p.E1145fs
STAD	TCGA-D7-A4YV-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851665	71851665	Frame_Shift_Del	G	-	p.K144fs
STAD	TCGA-D7-A4YV-01	PAK2	ENST00000426668.1,ENST00000327134.3	chr3	196539609:196539722:196541321:196541439:196544927:196545027,	196541322	196541439	196541368	196541368	Frame_Shift_Del	G	-	p.A327fs
STAD	TCGA-D7-A4YV-01	SOX6	ENST00000316399.6,ENST00000528252.1,ENST00000527619.1,ENST00000528429.1,ENST00000396356.3,ENST00000352083.6	chr11	16119154:16119234:16133348:16133469:16205431:16205500,	16133349	16133469	16133369	16133369	Frame_Shift_Del	G	-	p.P306fs
STAD	TCGA-D7-A4YV-01	PLEKHG4	ENST00000569875.1	chr16	67321852:67321917:67322069:67322303:67322391:67322507,67321852:67321917:67322069:67322303:67322705:67322845,	67322070	67322303	67322100	67322100	Frame_Shift_Del	C	-	p.A1084fs
STAD	TCGA-D7-A4YV-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770652	Frame_Shift_Del	G	-	p.P1127fs
STAD	TCGA-D7-A4YV-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100327812:100327979:100329941:100330145:100335955:100336137,	100329942	100330145	100330092	100330093	Frame_Shift_Ins	-	A	p.L204fs
STAD	TCGA-D7-A4YV-01	PARD3	ENST00000374789.3,ENST00000374776.1,ENST00000340077.5,ENST00000545693.1,ENST00000374773.1,ENST00000346874.4,ENST00000350537.4,ENST00000374788.3	chr10	34690753:34690845:34759012:34759191:34805906:34806087,34739244:34739376:34759012:34759191:34805906:34806087,	34759013	34759191	34759114	34759114	Frame_Shift_Del	A	-	p.S161fs
STAD	TCGA-D7-A4YV-01	ENTPD2	ENST00000355097.2,ENST00000312665.5	chr9	139944739:139944990:139945353:139945581:139945662:139945822,	139945354	139945581	139945517	139945517	Frame_Shift_Del	C	-	p.G204fs
STAD	TCGA-D7-A4YV-01	ACP1	ENST00000484464.1,ENST00000480874.1,ENST00000442386.1,ENST00000272065.5	chr2	271865:271939:272036:272150:276979:277085,271892:271939:272036:272150:275139:275200,	272037	272150	272080	272081	Frame_Shift_Ins	-	C	p.N54fs
STAD	TCGA-D7-A4YV-01	RAB2A	ENST00000466595.1,ENST00000530071.1,ENST00000531289.1,ENST00000262646.7,ENST00000452437.1	chr8	61497281:61497374:61504416:61504528:61531138:61531207,	61504417	61504528	61504440	61504441	Frame_Shift_Ins	-	A	p.V129fs
STAD	TCGA-D7-A4YV-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883437	4883438	Frame_Shift_Ins	-	C	p.Q417fs
STAD	TCGA-D7-A4YV-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450035	85450035	Frame_Shift_Del	A	-	p.A488fs
STAD	TCGA-D7-A4YV-01	HFM1	ENST00000430465.1	chr1	91781696:91781741:91781947:91782033:91784634:91784766,91781696:91781741:91781947:91782033:91784849:91784947,	91781948	91782033	91781980	91781980	Frame_Shift_Del	T	-	p.I956fs
STAD	TCGA-D7-A4YV-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61103096:61103351:61109241:61109367:61141658:61141784,	61109242	61109367	61109249	61109249	Frame_Shift_Del	G	-	p.R667fs
STAD	TCGA-CD-A4MH-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7574012	7574012	Frame_Shift_Del	C	-	p.E339fs
STAD	TCGA-D7-6815-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593481	48593482	Frame_Shift_Ins	-	T	p.S411fs
STAD	TCGA-D7-6815-01	PTPN7	ENST00000496197.1,ENST00000308986.5,ENST00000477554.1,ENST00000462815.1,ENST00000544762.1,ENST00000367279.4,ENST00000492977.1,ENST00000543735.1,ENST00000480836.1,ENST00000309017.3,ENST00000495688.1	chr1	202119438:202119552:202121669:202121827:202122852:202122938,	202121670	202121827	202121712	202121712	Frame_Shift_Del	G	-	p.P383fs
STAD	TCGA-CG-5720-01	PGA3	ENST00000543505.1,ENST00000325558.6,ENST00000541699.1,ENST00000543125.1	chr11	60977313:60977430:60978561:60978706:60978808:60978906,	60978562	60978706	60978621	60978621	Frame_Shift_Del	C	-	p.T278fs
STAD	TCGA-CG-5720-01	PIGR	ENST00000356495.4	chr1	207105015:207105147:207105800:207105922:207106330:207106511,	207105801	207105922	207105834	207105835	Frame_Shift_Ins	-	CA	p.G659fs
STAD	TCGA-BR-6802-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000574224.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16139692:16139870:16141998:16142160:16146580:16146673,	16141999	16142160	16142119	16142120	Frame_Shift_Ins	-	C	p.A447fs
STAD	TCGA-BR-6802-01	RIMS2	ENST00000262231.10,ENST00000515551.1,ENST00000507677.1,ENST00000507740.1,ENST00000504942.2,ENST00000436393.2,ENST00000408894.2,ENST00000406091.3	chr8	104924359:104924400:104927722:104927822:104928641:104928765,	104927723	104927822	104927779	104927779	Frame_Shift_Del	A	-	p.V623fs
STAD	TCGA-BR-6802-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965544	123965545	Frame_Shift_Ins	-	A	p.G598fs
STAD	TCGA-BR-6802-01	NUMA1	ENST00000358965.6	chr11	71723446:71723488:71723940:71727306:71727453:71727576,71721852:71721900:71723940:71727306:71727453:71727576,	71723941	71727306	71724190	71724190	Frame_Shift_Del	C	-	p.L1454fs
STAD	TCGA-BR-6802-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1	chr3	64527513:64527646:64532433:64532628:64536567:64536738,	64532434	64532628	64532503	64532503	Frame_Shift_Del	G	-	p.S1666fs
STAD	TCGA-BR-6802-01	UTP20	ENST00000551825.1,ENST00000261637.4	chr12	101680098:101680287:101682737:101682819:101683914:101684052,	101682738	101682819	101682762	101682763	Frame_Shift_Ins	-	A	p.H180fs
STAD	TCGA-BR-6802-01	MPDZ	ENST00000319198.6,ENST00000447879.1,ENST00000541718.1,ENST00000538841.1,ENST00000539508.1,ENST00000536827.1,ENST00000541093.1,ENST00000438511.1,ENST00000381015.4,ENST00000542806.1,ENST00000546205.1,ENST00000319217.7,ENST00000545857.1,ENST00000381022.2	chr9	13123151:13123297:13125214:13125389:13126514:13126589,	13125215	13125389	13125277	13125277	Frame_Shift_Del	T	-	p.K1582fs
STAD	TCGA-BR-6802-01	CFI	ENST00000510800.1,ENST00000394634.2,ENST00000394635.3,ENST00000512148.1	chr4	110685692:110685846:110687709:110687980:110723070:110723134,	110687710	110687980	110687927	110687927	Frame_Shift_Del	T	-	p.Y38fs
STAD	TCGA-BR-6802-01	TRRAP	ENST00000446306.3,ENST00000355540.3,ENST00000456197.1,ENST00000359863.4	chr7	98565107:98565321:98567734:98567914:98569421:98569568,	98567735	98567914	98567888	98567889	Frame_Shift_Ins	-	G	p.R2549fs
STAD	TCGA-BR-6802-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778860	64778861	Frame_Shift_Ins	-	A	p.I84fs
STAD	TCGA-BR-6802-01	CTSH	ENST00000525807.1,ENST00000527715.1,ENST00000533777.1,ENST00000220166.5,ENST00000534237.1	chr15	79214458:79214547:79215334:79215460:79217675:79217782,	79215335	79215460	79215392	79215392	Frame_Shift_Del	T	-	p.N292fs
STAD	TCGA-BR-6802-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-BR-6802-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-BR-6802-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-BR-6802-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266965	6266965	Frame_Shift_Del	C	-	p.A133fs
STAD	TCGA-BR-6802-01	CERS6	ENST00000392687.4,ENST00000305747.6	chr2	169417701:169417832:169487494:169487552:169547543:169547594,	169487495	169487552	169487547	169487547	Frame_Shift_Del	A	-	p.L153fs
STAD	TCGA-BR-6802-01	USP8	ENST00000433963.1,ENST00000396444.3,ENST00000307179.4	chr15	50769472:50769696:50773677:50774262:50781997:50782078,50769472:50769696:50773677:50774262:50776471:50776558,	50773678	50774262	50773879	50773880	Frame_Shift_Ins	-	A	p.E474fs
STAD	TCGA-BR-6802-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189591	75189591	Frame_Shift_Del	A	-	p.E145fs
STAD	TCGA-BR-4191-01	JAK2	ENST00000539801.1,ENST00000381652.3,ENST00000544510.1	chr9	5090445:5090570:5090738:5090911:5123003:5123121,	5090739	5090911	5090820	5090839	Frame_Shift_Del	GTTAAAATTGGAGATTTTGG	-	p.989_996del
STAD	TCGA-BR-4191-01	GLE1	ENST00000309971.4,ENST00000372770.4,ENST00000539582.1	chr9	131289734:131289804:131295791:131295934:131296039:131296230,	131295792	131295934	131295922	131295937	Frame_Shift_Del	AGAGAAATTTGTGGTG	-	p.481_485del
STAD	TCGA-BR-8059-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379233	29379233	Frame_Shift_Del	A	-	p.S393X
STAD	TCGA-BR-8059-01	ZCCHC4	ENST00000505412.1,ENST00000302874.4	chr4	25351113:25351264:25353210:25353311:25363480:25363602,	25353211	25353311	25353254	25353254	Frame_Shift_Del	T	-	p.Y318fs
STAD	TCGA-BR-8059-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459272	27459272	Frame_Shift_Del	A	-	p.N461fs
STAD	TCGA-BR-8059-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277935	186277936	Frame_Shift_Ins	-	A	p.P1028fs
STAD	TCGA-BR-8059-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134463921:134464009:134503895:134503959:134511319:134511423,	134503896	134503959	134503931	134503931	Frame_Shift_Del	A	-	p.L114X
STAD	TCGA-BR-8059-01	POLR2B	ENST00000441246.2,ENST00000478188.1,ENST00000381227.1,ENST00000314595.5,ENST00000431623.2	chr4	57887064:57887161:57888317:57888412:57889495:57889746,	57888318	57888412	57888355	57888355	Frame_Shift_Del	A	-	p.S819fs
STAD	TCGA-BR-8059-01	PPP2R5B	ENST00000164133.2	chr11	64699030:64699081:64699220:64699340:64700236:64700364,	64699221	64699340	64699297	64699297	Frame_Shift_Del	T	-	p.L358fs
STAD	TCGA-BR-8059-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60689254	60689254	Frame_Shift_Del	G	-	p.L265fs
STAD	TCGA-BR-8059-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60689254	60689254	Frame_Shift_Del	G	-	p.L265fs
STAD	TCGA-BR-8059-01	MFSD10	ENST00000507272.1	chr4	2934077:2934239:2934326:2934417:2934832:2934904,	2934327	2934417	2934405	2934406	Frame_Shift_Ins	-	C	p.G151fs
STAD	TCGA-BR-8059-01	MFSD10	ENST00000503596.1	chr4	2934077:2934239:2934326:2934485:2934832:2934904,2934077:2934136:2934326:2934485:2934832:2934904,	2934327	2934485	2934405	2934406	Frame_Shift_Ins	-	C	p.G151fs
STAD	TCGA-BR-8059-01	TERF2	ENST00000603068.1,ENST00000254942.3	chr16	69390236:69390959:69391420:69391464:69395306:69395374,	69391421	69391464	69391425	69391425	Frame_Shift_Del	T	-	p.K489fs
STAD	TCGA-BR-8059-01	PPOX	ENST00000479246.1,ENST00000352210.5,ENST00000367999.4	chr1	161137160:161137276:161137784:161137917:161138782:161138973,161137160:161137276:161137784:161137917:161138221:161138335,	161137785	161137917	161137804	161137804	Frame_Shift_Del	C	-	p.S119fs
STAD	TCGA-BR-8059-01	APPL2	ENST00000547439.1	chr12	105593150:105593309:105597480:105597563:105600838:105600985,105593150:105593302:105597480:105597563:105600838:105600985,	105597481	105597563	105597552	105597552	Frame_Shift_Del	A	-	p.K218fs
STAD	TCGA-BR-8059-01	DUOX2	ENST00000603300.1,ENST00000389039.6	chr15	45392247:45392426:45392952:45393036:45393402:45393472,	45392953	45393036	45392986	45392986	Frame_Shift_Del	C	-	p.G991fs
STAD	TCGA-BR-8059-01	COG5	ENST00000393603.2,ENST00000347053.3,ENST00000297135.3	chr7	106921744:106921844:106924015:106924177:106938586:106938791,	106924016	106924177	106924081	106924081	Frame_Shift_Del	A	-	p.P502fs
STAD	TCGA-BR-8059-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.R587fs
STAD	TCGA-CD-8535-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937769	76937770	Frame_Shift_Ins	-	T	p.K993fs
STAD	TCGA-CD-A48A-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968162	5968162	Frame_Shift_Del	T	-	p.K690fs
STAD	TCGA-CD-A48A-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000522181.1	chr8	92406024:92406079:92406163:92406267:92407289:92407877,	92406164	92406267	92406217	92406218	Frame_Shift_Ins	-	T	p.I629fs
STAD	TCGA-BR-6803-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765683	50765683	Frame_Shift_Del	C	-	p.L658fs
STAD	TCGA-BR-8590-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370873	240370873	Frame_Shift_Del	C	-	p.I920fs
STAD	TCGA-FP-A4BE-01	SPAG17	ENST00000336338.5	chr1	118565926:118566086:118567860:118568039:118570896:118571017,	118567861	118568039	118567980	118567980	Frame_Shift_Del	G	-	p.Q1264fs
STAD	TCGA-FP-A4BE-01	GALK1	ENST00000592494.1	chr17	73754671:73754680:73758784:73759520:73759977:73760086,	73758785	73759520	73759466	73759466	Frame_Shift_Del	C	-	p.G137fs
STAD	TCGA-FP-A4BE-01	ABCB10	ENST00000344517.4	chr1	229657338:229657382:229661682:229661863:229662975:229663055,	229661683	229661863	229661733	229661733	Frame_Shift_Del	A	-	p.F619fs
STAD	TCGA-FP-A4BE-01	KIF6	ENST00000287152.7,ENST00000538893.1,ENST00000373215.3,ENST00000373216.3,ENST00000458470.1	chr6	39563829:39564036:39580964:39581094:39602624:39602734,	39580965	39581094	39580993	39580993	Frame_Shift_Del	A	-	p.L204fs
STAD	TCGA-FP-A4BE-01	CTR9	ENST00000361367.2	chr11	10784977:10785085:10785189:10785426:10785658:10785748,	10785190	10785426	10785261	10785262	Frame_Shift_Ins	-	T	p.P343fs
STAD	TCGA-FP-A4BE-01	ATP6V1E1	ENST00000253413.5,ENST00000399798.2,ENST00000399796.2,ENST00000413576.1	chr22	18077304:18077382:18080959:18081054:18082792:18082861,	18080960	18081054	18081008	18081008	Frame_Shift_Del	T	-	p.N161fs
STAD	TCGA-FP-A4BE-01	TRERF1	ENST00000541110.1,ENST00000340840.2,ENST00000372922.4,ENST00000372917.4,ENST00000354325.2	chr6	42233488:42233535:42235891:42237586:42268375:42268487,	42235892	42237586	42236161	42236161	Frame_Shift_Del	G	-	p.L390fs
STAD	TCGA-FP-A4BE-01	ARHGEF5	ENST00000471847.2,ENST00000056217.5	chr7	144071824:144071982:144072606:144072768:144074212:144074283,	144072607	144072768	144072654	144072654	Frame_Shift_Del	G	-	p.R1449fs
STAD	TCGA-FP-A4BE-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000492143.1,ENST00000320356.2,ENST00000541220.1,ENST00000483967.1	chr7	148504616:148504798:148506162:148506247:148506401:148506482,	148506163	148506247	148506210	148506210	Frame_Shift_Del	A	-	p.A717fs
STAD	TCGA-FP-A4BE-01	MAP3K19	ENST00000315513.3,ENST00000358371.4,ENST00000392915.1,ENST00000375845.3	chr2	135741277:135741395:135743369:135745823:135749106:135749150,	135743370	135745823	135743471	135743471	Frame_Shift_Del	T	-	p.M991fs
STAD	TCGA-FP-A4BE-01	LEMD1	ENST00000367154.1,ENST00000391936.2	chr1	205385359:205385424:205388357:205388480:205389582:205389702,205350512:205350984:205388357:205388480:205389582:205389702,	205388358	205388480	205388453	205388453	Frame_Shift_Del	T	-	p.K37fs
STAD	TCGA-FP-A4BE-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044069	108044069	Frame_Shift_Del	T	-	p.S548fs
STAD	TCGA-FP-A4BE-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986250	2986251	Frame_Shift_Ins	-	A	p.G21fs
STAD	TCGA-FP-A4BE-01	TESPA1	ENST00000449076.1,ENST00000316577.8,ENST00000532804.1,ENST00000524622.1,ENST00000524923.1,ENST00000531122.1	chr12	55344137:55344174:55354951:55355051:55356214:55356481,	55354952	55355051	55354984	55354985	Frame_Shift_Ins	-	GG	p.H512fs
STAD	TCGA-FP-A4BE-01	RCC1	ENST00000373832.1	chr1	28844777:28844820:28856369:28856451:28858314:28858330,	28856370	28856451	28856409	28856410	Frame_Shift_Ins	-	C	p.S11fs
STAD	TCGA-FP-A4BE-01	UPF1	ENST00000600689.1,ENST00000262803.5,ENST00000599848.1,ENST00000596842.1	chr19	18974246:18974421:18974978:18975060:18976097:18976259,	18974979	18975060	18975059	18975059	Frame_Shift_Del	G	-	p.Q952fs
STAD	TCGA-FP-A4BE-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025921	97025921	Frame_Shift_Del	A	-	p.T466fs
STAD	TCGA-FP-A4BE-01	NCEH1	ENST00000424772.1,ENST00000538775.1	chr3	172363412:172363482:172365651:172365904:172428636:172428842,	172365652	172365904	172365825	172365826	Frame_Shift_Ins	-	T	p.S105fs
STAD	TCGA-FP-A4BE-01	NCEH1	ENST00000273512.3	chr3	172363412:172363482:172365675:172365904:172428636:172428842,	172365676	172365904	172365825	172365826	Frame_Shift_Ins	-	T	p.S105fs
STAD	TCGA-FP-A4BE-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631681	116631682	Frame_Shift_Ins	-	T	p.T215fs
STAD	TCGA-FP-A4BE-01	ITPA	ENST00000460550.1	chr20	3189543:3189679:3193814:3193872:3193964:3194029,3190170:3190263:3193814:3193872:3194630:3194704,	3193815	3193872	3193862	3193863	Frame_Shift_Ins	-	A	p.Q38fs
STAD	TCGA-FP-A4BE-01	FCGR3A	ENST00000367969.3,ENST00000540048.1,ENST00000436743.1,ENST00000367967.3,ENST00000426740.1,ENST00000443193.1	chr1	161512712:161512989:161514490:161514748:161518210:161518465,	161514491	161514748	161514529	161514529	Frame_Shift_Del	T	-	p.N216fs
STAD	TCGA-FP-A4BE-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000517930.1,ENST00000276609.3,ENST00000309536.2,ENST00000522181.1	chr8	92375699:92375766:92378807:92378945:92382012:92382061,	92378808	92378945	92378866	92378867	Frame_Shift_Ins	-	A	p.A516fs
STAD	TCGA-FP-A4BE-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769342	176769342	Frame_Shift_Del	T	-	p.N126fs
STAD	TCGA-FP-A4BE-01	FASTK	ENST00000482806.1	chr7	150774077:150774114:150774187:150774488:150774707:150774867,	150774188	150774488	150774416	150774417	Frame_Shift_Del	CA	-	p.424_425del
STAD	TCGA-FP-A4BE-01	FASTK	ENST00000460980.1,ENST00000482571.1,ENST00000483953.1,ENST00000489884.1,ENST00000297532.6,ENST00000353841.2	chr7	150774187:150774323:150774396:150774488:150774707:150774867,	150774397	150774488	150774416	150774417	Frame_Shift_Del	CA	-	p.424_425del
STAD	TCGA-FP-A4BE-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855926	100855927	Frame_Shift_Ins	-	G	p.R297fs
STAD	TCGA-FP-A4BE-01	IFT122	ENST00000511498.1,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000504021.1,ENST00000440957.2,ENST00000349441.2	chr3	129182402:129182469:129183477:129183624:129188184:129188260,	129183478	129183624	129183576	129183577	Frame_Shift_Ins	-	G	p.P223fs
STAD	TCGA-FP-A4BE-01	PRDM8	ENST00000515013.1,ENST00000504452.1,ENST00000339711.4,ENST00000415738.2	chr4	81118778:81118917:81121232:81121453:81122443:81122610,	81121233	81121453	81121307	81121308	Frame_Shift_Ins	-	T	p.I25fs
STAD	TCGA-FP-A4BE-01	TULP2	ENST00000221399.3	chr19	49388704:49388817:49391206:49391518:49392766:49392888,	49391207	49391518	49391244	49391245	Frame_Shift_Ins	-	G	p.L304fs
STAD	TCGA-FP-A4BE-01	STK17B	ENST00000263955.4,ENST00000409228.1	chr2	197010634:197010779:197021162:197021375:197027985:197028151,	197021163	197021375	197021326	197021327	Frame_Shift_Ins	-	T	p.E58fs
STAD	TCGA-FP-A4BE-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525560	75525560	Frame_Shift_Del	C	-	p.V456fs
STAD	TCGA-FP-A4BE-01	TNFAIP2	ENST00000559406.1,ENST00000560869.1,ENST00000333007.1	chr14	103592725:103593029:103596076:103596191:103596338:103596370,103593912:103593966:103596076:103596191:103596338:103596370,	103596077	103596191	103596141	103596141	Frame_Shift_Del	C	-	p.L308fs
STAD	TCGA-FP-A4BE-01	NFATC2	ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000610033.1	chr20	50007945:50007988:50048603:50049293:50051724:50051851,50015179:50015267:50048603:50049293:50051724:50051851,	50048604	50049293	50048652	50048652	Frame_Shift_Del	C	-	p.V892fs
STAD	TCGA-FP-A4BE-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359520	19359520	Frame_Shift_Del	C	-	p.G1216fs
STAD	TCGA-FP-A4BE-01	BTNL8	ENST00000503543.1	chr5	180338488:180338614:180374624:180374755:180375354:180375375,	180374625	180374755	180374631	180374632	Frame_Shift_Ins	-	GA	p.R265fs
STAD	TCGA-FP-A4BE-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374631	180374632	Frame_Shift_Ins	-	GA	p.R265fs
STAD	TCGA-FP-A4BE-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315786	208315787	Frame_Shift_Ins	-	GG	p.H465fs
STAD	TCGA-FP-A4BE-01	TTC37	ENST00000513823.1,ENST00000358746.2	chr5	94877558:94877610:94878887:94879031:94882764:94882855,	94878888	94879031	94878927	94878927	Frame_Shift_Del	T	-	p.A66fs
STAD	TCGA-FP-A4BE-01	TNFRSF11A	ENST00000586569.1	chr18	60033940:60033993:60035933:60036717:60051983:60054892,	60035934	60036717	60036290	60036290	Frame_Shift_Del	G	-	p.V380fs
STAD	TCGA-FP-A4BE-01	SLC13A3	ENST00000290317.5,ENST00000495082.1,ENST00000472148.1,ENST00000279027.4,ENST00000435032.1,ENST00000396360.1,ENST00000413164.2	chr20	45188632:45188837:45192052:45192190:45194867:45195029,	45192053	45192190	45192166	45192166	Frame_Shift_Del	G	-	p.L507fs
STAD	TCGA-FP-A4BE-01	AFF1	ENST00000511442.1,ENST00000507468.1,ENST00000395146.4,ENST00000503477.1	chr4	87928420:87928576:87967317:87967438:87967846:87968042,87869649:87869723:87967317:87967438:87967846:87968042,	87967318	87967438	87967391	87967392	Frame_Shift_Del	AA	-	p.37_38del
STAD	TCGA-FP-A4BE-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104628	26104629	Frame_Shift_Ins	-	G	p.P430fs
STAD	TCGA-FP-A4BE-01	DUS3L	ENST00000309061.7,ENST00000589085.1,ENST00000590110.1	chr19	5788034:5788187:5788367:5788409:5789217:5789550,	5788368	5788409	5788376	5788376	Frame_Shift_Del	G	-	p.L312fs
STAD	TCGA-FP-A4BE-01	MEST	ENST00000463263.1,ENST00000223215.4,ENST00000416162.2,ENST00000341441.5,ENST00000378576.4,ENST00000393187.1	chr7	130142494:130142561:130143773:130143837:130144779:130145194,	130143774	130143837	130143793	130143794	Frame_Shift_Ins	-	T	p.P282fs
STAD	TCGA-FP-A4BE-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529513	219529514	Frame_Shift_Ins	-	C	p.G250fs
STAD	TCGA-FP-A4BE-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
STAD	TCGA-FP-A4BE-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967356	91967357	Frame_Shift_Ins	-	A	p.L28fs
STAD	TCGA-FP-A4BE-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215646008	215646008	Frame_Shift_Del	T	-	p.K197fs
STAD	TCGA-FP-A4BE-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788023	Frame_Shift_Del	T	-	p.V1116fs
STAD	TCGA-FP-A4BE-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124079983	124079984	Frame_Shift_Ins	-	C	p.H234fs
STAD	TCGA-FP-A4BE-01	ASPG	ENST00000546892.2	chr14	104573566:104573682:104575565:104575652:104578256:104578337,	104575566	104575652	104575600	104575600	Frame_Shift_Del	G	-	p.A489fs
STAD	TCGA-FP-A4BE-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556608	155556609	Frame_Shift_Ins	-	G	p.R1028fs
STAD	TCGA-FP-A4BE-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556608	155556609	Frame_Shift_Ins	-	G	p.R1028fs
STAD	TCGA-FP-A4BE-01	AXDND1	ENST00000461179.2,ENST00000457238.2	chr1	179401401:179401477:179414104:179414339:179418205:179418348,	179414105	179414339	179414285	179414285	Frame_Shift_Del	A	-	p.I581fs
STAD	TCGA-FP-A4BE-01	TRIP10	ENST00000596543.1,ENST00000595305.1,ENST00000596078.1,ENST00000600428.1,ENST00000600677.1,ENST00000596758.1,ENST00000313244.9,ENST00000313285.8,ENST00000600491.1	chr19	6741020:6741136:6741235:6741292:6742977:6743092,	6741236	6741292	6741246	6741246	Frame_Shift_Del	A	-	p.V50fs
STAD	TCGA-FP-A4BE-01	TMEM40	ENST00000476331.1,ENST00000428020.1,ENST00000435575.1,ENST00000480698.1,ENST00000435218.2,ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12776205:12776292:12777053:12777116:12778076:12778151,	12777054	12777116	12777078	12777078	Frame_Shift_Del	G	-	p.L220fs
STAD	TCGA-FP-A4BE-01	IGFBP7	ENST00000295666.4,ENST00000537922.1	chr4	57899360:57899477:57906989:57907099:57976042:57976112,	57906990	57907099	57907077	57907077	Frame_Shift_Del	G	-	p.K167fs
STAD	TCGA-FP-A4BE-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1,ENST00000277537.6	chr9	139342535:139342613:139345707:139345860:139347879:139347962,	139345708	139345860	139345823	139345823	Frame_Shift_Del	G	-	p.P2066fs
STAD	TCGA-FP-A4BE-01	HOXA3	ENST00000317201.2	chr7	27146630:27148339:27149733:27150379:27162177:27162261,	27149734	27150379	27149901	27149901	Frame_Shift_Del	G	-	p.P120fs
STAD	TCGA-FP-A4BE-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
STAD	TCGA-CD-8529-01	DCBLD1	ENST00000534777.1,ENST00000296955.8,ENST00000338728.5	chr6	117860471:117860542:117861830:117861978:117862080:117862188,	117861831	117861978	117861962	117861962	Frame_Shift_Del	T	-	p.G411fs
STAD	TCGA-BR-4363-01	RPS20	ENST00000009589.3,ENST00000518875.1	chr8	56985685:56985831:56986618:56986718:56986939:56987031,56986253:56986327:56986618:56986718:56986939:56987031,	56986619	56986718	56986697	56986697	Frame_Shift_Del	T	-	p.T9fs
STAD	TCGA-BR-4363-01	RPS20	ENST00000520490.1	chr8	56985685:56985831:56986618:56986709:56986939:56987031,	56986619	56986709	56986697	56986697	Frame_Shift_Del	T	-	p.T9fs
STAD	TCGA-BR-4363-01	RPS20	ENST00000521289.1	chr8	56985685:56985831:56986253:56986718:56986939:56987031,	56986254	56986718	56986697	56986697	Frame_Shift_Del	T	-	p.T9fs
STAD	TCGA-BR-4363-01	LZTS1	ENST00000381569.1,ENST00000522290.1,ENST00000265801.6	chr8	20107622:20107874:20110292:20111096:20112347:20112692,	20110293	20111096	20110677	20110677	Frame_Shift_Del	G	-	p.I256fs
STAD	TCGA-BR-4363-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87031449:87031618:87032450:87032597:87035603:87035810,	87032451	87032597	87032452	87032452	Frame_Shift_Del	T	-	p.K1218fs
STAD	TCGA-BR-4363-01	KCTD9	ENST00000519665.1,ENST00000221200.4	chr8	25286777:25287489:25290019:25290153:25290845:25290951,	25290020	25290153	25290078	25290078	Frame_Shift_Del	T	-	p.N332fs
STAD	TCGA-BR-4363-01	PTCD3	ENST00000409277.3,ENST00000254630.7,ENST00000484203.1	chr2	86352577:86352638:86352917:86353003:86354283:86354313,	86352918	86353003	86352984	86352984	Frame_Shift_Del	A	-	p.E311fs
STAD	TCGA-BR-4363-01	CTPS2	ENST00000359276.4	chrX	16717045:16717216:16720859:16721064:16730457:16730775,	16720860	16721064	16720875	16720875	Frame_Shift_Del	A	-	p.S51fs
STAD	TCGA-BR-4363-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577036	7577036	Frame_Shift_Del	G	-	p.P301fs
STAD	TCGA-BR-4363-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898183	53898184	Frame_Shift_Ins	-	C	p.S142fs
STAD	TCGA-BR-4363-01	NEB	ENST00000603639.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000413693.1,ENST00000397337.2,ENST00000409198.1,ENST00000172853.10	chr2	152362679:152362772:152363422:152363527:152364518:152364556,	152363423	152363527	152363488	152363488	Frame_Shift_Del	T	-	p.I7866fs
STAD	TCGA-BR-4363-01	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000381633.3	chr22	38895404:38895504:38897134:38897285:38901955:38902299,	38897135	38897285	38897210	38897211	Frame_Shift_Ins	-	TT	p.K121fs
STAD	TCGA-BR-4363-01	MGRN1	ENST00000591895.1,ENST00000399577.5,ENST00000536343.1,ENST00000415496.1,ENST00000586183.1,ENST00000262370.7,ENST00000590790.1,ENST00000587747.1,ENST00000593224.1,ENST00000588994.1	chr16	4700400:4700484:4701963:4702052:4702678:4702825,	4701964	4702052	4701983	4701983	Frame_Shift_Del	C	-	p.A76fs
STAD	TCGA-BR-4363-01	USP19	ENST00000398892.3,ENST00000398896.1,ENST00000398898.2,ENST00000417901.1,ENST00000306026.5	chr3	49153156:49153371:49153479:49153595:49153712:49153784,49153156:49153377:49153479:49153595:49153712:49153784,	49153480	49153595	49153503	49153503	Frame_Shift_Del	C	-	p.G483fs
STAD	TCGA-BR-4363-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154750	19154750	Frame_Shift_Del	T	-	p.S19fs
STAD	TCGA-BR-4363-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698177	2698177	Frame_Shift_Del	A	-	p.P852fs
STAD	TCGA-BR-4363-01	RFX3	ENST00000358730.2,ENST00000382004.3,ENST00000302303.1	chr9	3275499:3275612:3277339:3277461:3288130:3288250,	3277340	3277461	3277341	3277342	Frame_Shift_Ins	-	A	p.L324fs
STAD	TCGA-BR-4363-01	SPEN	ENST00000442985.1,ENST00000375759.3	chr1	16235818:16235976:16237595:16237796:16242622:16242774,	16237596	16237796	16237752	16237753	Frame_Shift_Del	TT	-	p.400_400del
STAD	TCGA-BR-4363-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431600	36431600	Frame_Shift_Del	C	-	p.G424fs
STAD	TCGA-BR-4363-01	PSMD7	ENST00000567958.1,ENST00000568717.1,ENST00000540379.1,ENST00000568615.2,ENST00000219313.4	chr16	74334012:74334104:74334949:74335042:74335452:74335550,	74334950	74335042	74334988	74334988	Frame_Shift_Del	T	-	p.W68fs
STAD	TCGA-BR-4363-01	KLHL5	ENST00000359687.2,ENST00000515612.1	chr4	39114639:39114852:39116778:39116950:39122629:39122825,39114639:39114852:39116778:39116950:39128313:39128415,	39116779	39116950	39116879	39116879	Frame_Shift_Del	G	-	p.V713fs
STAD	TCGA-BR-4363-01	ST3GAL4	ENST00000534083.1,ENST00000444328.2,ENST00000526756.1,ENST00000227495.6,ENST00000532243.1,ENST00000526727.1,ENST00000392669.2,ENST00000449406.2,ENST00000530591.1,ENST00000528858.1,ENST00000356132.4,ENST00000534457.1,ENST00000528605.1,ENST00000524860.1	chr11	126277146:126277244:126277468:126277529:126278201:126278391,126277146:126277244:126277468:126277529:126277993:126278071,	126277469	126277529	126277512	126277512	Frame_Shift_Del	C	-	p.I108fs
STAD	TCGA-BR-4363-01	RRN3	ENST00000540462.1,ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1	chr16	15163926:15164111:15164977:15165108:15166806:15166937,	15164978	15165108	15165070	15165070	Frame_Shift_Del	T	-	p.L390fs
STAD	TCGA-BR-4363-01	EHMT1	ENST00000488242.1,ENST00000486164.1,ENST00000462942.1,ENST00000460843.1	chr9	140705912:140706067:140707457:140707625:140707837:140707896,	140707458	140707625	140707505	140707506	Frame_Shift_Del	GA	-	p.972_972del
STAD	TCGA-BR-4363-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927827	57927827	Frame_Shift_Del	C	-	p.G195fs
STAD	TCGA-BR-4363-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-BR-4363-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R780fs
STAD	TCGA-BR-4363-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554712.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53360093:53360145:53385840:53386074:53417129:53417286,	53385841	53386074	53386064	53386064	Frame_Shift_Del	T	-	p.D57fs
STAD	TCGA-BR-4363-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101117	27101117	Frame_Shift_Del	C	-	p.A1466fs
STAD	TCGA-BR-4363-01	TCP11	ENST00000444780.2,ENST00000412155.2,ENST00000507706.1,ENST00000418521.2,ENST00000512012.1,ENST00000373974.4,ENST00000311875.5,ENST00000504758.1,ENST00000505911.1,ENST00000505400.1	chr6	35090085:35090114:35096838:35096959:35108981:35109030,35090085:35090114:35096838:35096959:35108523:35108661,35090085:35090114:35096838:35096959:35107796:35108002,35090085:35090114:35096838:35096959:35103883:35103980,	35096839	35096959	35096881	35096882	Frame_Shift_Ins	-	G	p.P118fs
STAD	TCGA-BR-4363-01	B4GALT1	ENST00000541851.1,ENST00000379731.4	chr9	33113771:33113876:33115988:33116111:33120416:33120604,	33115989	33116111	33115994	33115994	Frame_Shift_Del	A	-	p.N319fs
STAD	TCGA-BR-4363-01	ATP6V1A	ENST00000273398.3,ENST00000538620.1,ENST00000470455.1	chr3	113507559:113507722:113508578:113508687:113513718:113513841,	113508579	113508687	113508677	113508680	Frame_Shift_Del	TATT	-	p.326_327del
STAD	TCGA-BR-4363-01	EIF3E	ENST00000521614.1,ENST00000220849.5,ENST00000522445.1,ENST00000519030.1	chr8	109241298:109241424:109247226:109247331:109248389:109248432,	109247227	109247331	109247236	109247236	Frame_Shift_Del	A	-	p.R155fs
STAD	TCGA-BR-4363-01	PSMC3	ENST00000298852.3,ENST00000530912.1,ENST00000602866.1	chr11	47440352:47440496:47440666:47440748:47441814:47441960,	47440667	47440748	47440696	47440696	Frame_Shift_Del	C	-	p.A394fs
STAD	TCGA-BR-4363-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667346	203667346	Frame_Shift_Del	C	-	p.I85fs
STAD	TCGA-BR-4363-01	PPP2R3C	ENST00000554899.1	chr14	35568513:35568590:35577344:35577442:35579053:35579137,	35577345	35577442	35577434	35577434	Frame_Shift_Del	A	-	p.F138fs
STAD	TCGA-BR-4363-01	KCTD18	ENST00000478816.1,ENST00000359878.3,ENST00000409157.1	chr2	201363724:201363807:201369470:201369682:201371579:201371814,	201369471	201369682	201369472	201369472	Frame_Shift_Del	T	-	p.K124fs
STAD	TCGA-CG-5734-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141244796	141244796	Frame_Shift_Del	T	-	p.K367fs
STAD	TCGA-CG-5734-01	UHRF1BP1L	ENST00000551973.1,ENST00000279907.7,ENST00000545232.2,ENST00000356828.3	chr12	100476793:100476912:100478253:100478436:100480052:100480136,	100478254	100478436	100478259	100478262	Frame_Shift_Del	TGTG	-	p.427_428del
STAD	TCGA-CG-5734-01	CUL9	ENST00000506830.1,ENST00000354495.3,ENST00000504647.1,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43191001:43191135:43191832:43191906:43191987:43192322,	43191833	43191906	43191861	43191861	Frame_Shift_Del	C	-	p.S2438fs
STAD	TCGA-BR-8295-01	CAV2	ENST00000484871.1,ENST00000222693.4,ENST00000498493.1	chr7	116139894:116139985:116140313:116140501:116146024:116146083,	116140314	116140501	116140362	116140365	Frame_Shift_Del	GACA	-	p.66_67del
STAD	TCGA-BR-8295-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877230	38877233	Frame_Shift_Del	TCTC	-	p.122_123del
STAD	TCGA-D7-6525-01	GOLGA3	ENST00000204726.3,ENST00000456883.2,ENST00000450791.2	chr12	133354251:133354391:133357383:133357500:133358881:133359079,	133357384	133357500	133357449	133357449	Frame_Shift_Del	G	-	p.L1173fs
STAD	TCGA-BR-8289-01	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110200	120110201	Frame_Shift_Ins	-	G	p.T85fs
STAD	TCGA-BR-8289-01	TBX3	ENST00000349155.2,ENST00000257566.3	chr12	115111969:115112640:115114117:115114275:115115384:115115461,	115114118	115114275	115114134	115114134	Frame_Shift_Del	C	-	p.T362fs
STAD	TCGA-FP-8631-01	LCA5L	ENST00000418018.1,ENST00000288350.3,ENST00000358268.2,ENST00000485895.2,ENST00000380671.2	chr21	40795345:40795416:40800097:40800429:40801056:40801137,	40800098	40800429	40800395	40800395	Frame_Shift_Del	T	-	p.T9fs
STAD	TCGA-FP-8631-01	ECD	ENST00000453402.1,ENST00000430082.2,ENST00000372979.4	chr10	74912103:74912179:74914013:74914206:74916032:74916211,	74914014	74914206	74914192	74914193	Frame_Shift_Ins	-	T	p.I202fs
STAD	TCGA-CG-5723-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60689254	60689254	Frame_Shift_Del	G	-	p.L265fs
STAD	TCGA-CG-5723-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60689254	60689254	Frame_Shift_Del	G	-	p.L265fs
STAD	TCGA-CG-5723-01	YPEL3	ENST00000566401.1	chr16	30106173:30106218:30106318:30106467:30106572:30106656,	30106319	30106467	30106447	30106447	Frame_Shift_Del	C	-	p.R85fs
STAD	TCGA-CG-5723-01	YPEL3	ENST00000565110.1,ENST00000398841.1,ENST00000568674.1,ENST00000398838.4,ENST00000562641.1,ENST00000563788.1,ENST00000566595.1	chr16	30106173:30106218:30106423:30106467:30106572:30106656,	30106424	30106467	30106447	30106447	Frame_Shift_Del	C	-	p.R85fs
STAD	TCGA-CG-5723-01	DEK	ENST00000397239.3,ENST00000515742.1	chr6	18258183:18258293:18258534:18258636:18264073:18264227,	18258535	18258636	18258595	18258596	Frame_Shift_Ins	-	T	p.V63fs
STAD	TCGA-CG-5723-01	SERINC2	ENST00000536384.1,ENST00000373709.3,ENST00000491976.1,ENST00000373710.1,ENST00000536859.1	chr1	31901854:31901915:31902243:31902385:31905813:31906026,	31902244	31902385	31902257	31902257	Frame_Shift_Del	C	-	p.N304fs
STAD	TCGA-CG-5723-01	COL18A1	ENST00000400337.2	chr21	46825293:46825388:46888155:46888700:46893808:46893895,	46888156	46888700	46888199	46888199	Frame_Shift_Del	C	-	p.D230fs
STAD	TCGA-CG-5723-01	LDB1	ENST00000361198.5,ENST00000425280.1	chr10	103869677:103869800:103870285:103870458:103870625:103870728,	103870286	103870458	103870407	103870407	Frame_Shift_Del	C	-	p.G135fs
STAD	TCGA-CG-5723-01	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27751808	27751809	Frame_Shift_Del	CT	-	p.730_730del
STAD	TCGA-CG-5723-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176136	63176136	Frame_Shift_Del	A	-	p.I753fs
STAD	TCGA-CG-5723-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70806878	70806878	Frame_Shift_Del	A	-	p.E1320fs
STAD	TCGA-CG-5723-01	BMPR2	ENST00000374580.4,ENST00000374574.2	chr2	203383544:203383775:203384809:203384924:203395516:203395677,	203384810	203384924	203384859	203384859	Frame_Shift_Del	C	-	p.S301fs
STAD	TCGA-CG-5723-01	RAD23B	ENST00000419616.1,ENST00000358015.3	chr9	110045807:110045976:110062421:110062503:110064315:110064395,	110062422	110062503	110062486	110062486	Frame_Shift_Del	A	-	p.Q44fs
STAD	TCGA-CG-5723-01	TRIP4	ENST00000557834.1	chr15	64680060:64680247:64686205:64686314:64687596:64687730,	64686206	64686314	64686305	64686305	Frame_Shift_Del	A	-	p.F87fs
STAD	TCGA-CG-5723-01	PHB	ENST00000504124.1,ENST00000300408.3,ENST00000512041.2,ENST00000508009.1,ENST00000446735.1,ENST00000419140.2	chr17	47484122:47484216:47486403:47486520:47486692:47486835,	47486404	47486520	47486482	47486483	Frame_Shift_Del	CT	-	p.144_145del
STAD	TCGA-CG-5723-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735432	95735432	Frame_Shift_Del	A	-	p.L883fs
STAD	TCGA-CG-5723-01	AKNAD1	ENST00000369994.1	chr1	109377068:109377150:109377550:109377588:109380171:109380328,	109377551	109377588	109377583	109377583	Frame_Shift_Del	G	-	p.N545fs
STAD	TCGA-CG-5723-01	AKNAD1	ENST00000369995.3,ENST00000370001.3,ENST00000357393.4	chr1	109377068:109377150:109377550:109377678:109380171:109380328,	109377551	109377678	109377583	109377583	Frame_Shift_Del	G	-	p.N545fs
STAD	TCGA-CG-5723-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63487620	63487620	Frame_Shift_Del	A	-	p.E549fs
STAD	TCGA-CG-5723-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63487620	63487620	Frame_Shift_Del	A	-	p.E549fs
STAD	TCGA-CG-5723-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188444	47188444	Frame_Shift_Del	C	-	p.H30fs
STAD	TCGA-CG-5723-01	LAMA3	ENST00000399516.3,ENST00000313654.9,ENST00000585600.1	chr18	21333684:21333776:21338359:21338475:21343368:21343487,	21338360	21338475	21338390	21338391	Frame_Shift_Ins	-	G	p.C326fs
STAD	TCGA-CG-5723-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171821566:171821643:171833280:171833356:171849419:171849500,	171833281	171833356	171833291	171833291	Frame_Shift_Del	G	-	p.F75fs
STAD	TCGA-CG-5723-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428501	44428501	Frame_Shift_Del	T	-	p.S54fs
STAD	TCGA-CG-5723-01	CBFB	ENST00000290858.6,ENST00000412916.2,ENST00000561924.2	chr16	67063854:67064080:67070541:67070658:67100584:67100699,67063629:67063716:67070541:67070658:67100584:67100663,	67070542	67070658	67070569	67070570	Frame_Shift_Del	TC	-	p.64_65del
STAD	TCGA-CG-5723-01	CALCA	ENST00000331587.4,ENST00000469608.1,ENST00000396372.2,ENST00000359642.3	chr11	14989373:14989400:14991480:14991621:14992652:14992747,14990371:14990543:14991480:14991621:14992652:14992747,	14991481	14991621	14991488	14991489	Frame_Shift_Ins	-	CT	p.G74fs
STAD	TCGA-CG-5723-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33324493:33324562:33328166:33331145:33334610:33334732,	33328167	33331145	33331070	33331070	Frame_Shift_Del	G	-	p.P997fs
STAD	TCGA-CG-5723-01	ZMYND19	ENST00000298585.2	chr9	140477434:140477615:140481418:140481559:140482168:140482275,	140481419	140481559	140481542	140481542	Frame_Shift_Del	C	-	p.G79fs
STAD	TCGA-CG-5723-01	WNK1	ENST00000315939.6,ENST00000340908.4,ENST00000530271.2,ENST00000535698.1	chr12	987437:987527:988738:989197:989886:989980,	988739	989197	989023	989023	Frame_Shift_Del	G	-	p.P886fs
STAD	TCGA-CG-5723-01	DMKN	ENST00000402589.2,ENST00000602679.1,ENST00000498593.1,ENST00000498211.1,ENST00000471786.2,ENST00000467637.1,ENST00000419602.1,ENST00000462126.1,ENST00000464709.2,ENST00000483855.1,ENST00000414866.2,ENST00000471017.1,ENST00000602781.1,ENST00000429837.1,ENST00000462721.1,ENST00000436012.1,ENST00000493979.1,ENST00000465927.1,ENST00000339686.3,ENST00000597212.1,ENST00000490622.1,ENST00000467532.1,ENST00000498269.1,ENST00000486450.1,ENST00000460051.1,ENST00000492341.2,ENST00000463292.1,ENST00000434389.1,ENST00000488542.2,ENST00000464894.1,ENST00000443640.1,ENST00000472252.2,ENST00000482321.1	chr19	35993037:35993085:35993731:35993788:35996619:35996667,	35993732	35993788	35993771	35993771	Frame_Shift_Del	G	-	p.S385fs
STAD	TCGA-CG-5723-01	TBX5	ENST00000310346.4	chr12	114839630:114839725:114841556:114841741:114845618:114846192,	114841557	114841741	114841604	114841604	Frame_Shift_Del	C	-	p.A34fs
STAD	TCGA-CG-5723-01	MFAP4	ENST00000571210.1,ENST00000299610.4,ENST00000395592.2	chr17	19288670:19288767:19289622:19289777:19290072:19290094,	19289623	19289777	19289686	19289686	Frame_Shift_Del	G	-	p.S84fs
STAD	TCGA-CG-5723-01	TRAPPC10	ENST00000291574.4,ENST00000422875.1	chr21	45502668:45503183:45504002:45504144:45506682:45506841,	45504003	45504144	45504083	45504083	Frame_Shift_Del	C	-	p.Y773fs
STAD	TCGA-CG-5723-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832909	24832910	Frame_Shift_Ins	-	A	p.K1570fs
STAD	TCGA-CG-5723-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28878124	28878124	Frame_Shift_Del	G	-	p.G236fs
STAD	TCGA-CG-5723-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673438	Frame_Shift_Del	G	-	p.R201fs
STAD	TCGA-CG-5723-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127462	170127462	Frame_Shift_Del	A	-	p.S758X
STAD	TCGA-CG-5723-01	SGMS1	ENST00000361781.2	chr10	52087037:52087082:52103251:52104105:52193235:52193316,	52103252	52104105	52103731	52103731	Frame_Shift_Del	G	-	p.L49fs
STAD	TCGA-CG-5723-01	GFRA1	ENST00000544592.1,ENST00000369234.4,ENST00000355422.6,ENST00000439649.3,ENST00000369236.1	chr10	117825083:117825137:117849251:117849433:117853212:117853347,	117849252	117849433	117849274	117849274	Frame_Shift_Del	A	-	p.L392fs
STAD	TCGA-CG-5723-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748303	43748304	Frame_Shift_Del	AA	-	p.835_835del
STAD	TCGA-CG-5723-01	PLEKHA4	ENST00000596982.1	chr19	49363606:49363716:49364657:49364758:49368759:49368814,	49364658	49364758	49364680	49364681	Frame_Shift_Ins	-	G	p.R115fs
STAD	TCGA-CG-5723-01	PCOLCE	ENST00000496269.1	chr7	100200025:100200174:100201052:100201161:100201581:100201759,	100201053	100201161	100201128	100201128	Frame_Shift_Del	C	-	p.Y57fs
STAD	TCGA-CG-5723-01	BTBD16	ENST00000368994.2,ENST00000260723.4	chr10	124058518:124058649:124066703:124066823:124088994:124089086,	124066704	124066823	124066813	124066813	Frame_Shift_Del	T	-	p.T300fs
STAD	TCGA-CG-5723-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000542001.1,ENST00000541562.1,ENST00000321897.5	chr6	30889701:30889772:30889892:30890018:30890226:30890331,	30889893	30890018	30889916	30889916	Frame_Shift_Del	C	-	p.Y640fs
STAD	TCGA-CG-5723-01	NELFCD	ENST00000460601.1,ENST00000344018.3,ENST00000474543.1,ENST00000602795.1	chr20	57564558:57564695:57564912:57565043:57565964:57566130,	57564913	57565043	57564987	57564987	Frame_Shift_Del	G	-	p.Q262fs
STAD	TCGA-CG-5723-01	NELFCD	ENST00000477741.1	chr20	57564558:57564695:57564912:57565287:57565964:57566130,	57564913	57565287	57564987	57564987	Frame_Shift_Del	G	-	p.Q262fs
STAD	TCGA-CG-5723-01	AXL	ENST00000593513.1,ENST00000359092.3,ENST00000599659.1,ENST00000301178.4	chr19	41743848:41744059:41744374:41744514:41745068:41745219,	41744375	41744514	41744385	41744385	Frame_Shift_Del	C	-	p.G335fs
STAD	TCGA-CG-5723-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17068662:17068725:17081700:17081843:17085896:17086068,17068662:17068725:17081700:17081843:17085906:17086068,	17081701	17081843	17081703	17081703	Frame_Shift_Del	G	-	p.R785fs
STAD	TCGA-CG-5723-01	LRGUK	ENST00000285928.2	chr7	133861728:133861815:133863254:133863361:133868485:133868605,	133863255	133863361	133863282	133863282	Frame_Shift_Del	C	-	p.P378fs
STAD	TCGA-CG-5723-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874019	104874020	Frame_Shift_Del	AC	-	p.188_189del
STAD	TCGA-CG-5723-01	APIP	ENST00000278359.5,ENST00000527830.1,ENST00000532428.2,ENST00000395787.3	chr11	34904222:34904363:34904883:34905051:34909839:34909975,	34904884	34905051	34904909	34904909	Frame_Shift_Del	C	-	p.E202fs
STAD	TCGA-CG-5723-01	ATP2C2	ENST00000567892.1	chr16	84488423:84488590:84492725:84492794:84494259:84494407,	84492726	84492794	84492752	84492752	Frame_Shift_Del	T	-	p.I725fs
STAD	TCGA-CG-5723-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306278	33306278	Frame_Shift_Del	C	-	p.G721fs
STAD	TCGA-CG-5723-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
STAD	TCGA-CG-5723-01	GPC2	ENST00000471717.1,ENST00000292377.2	chr7	99772307:99772388:99773194:99773517:99773829:99773988,	99773195	99773517	99773286	99773286	Frame_Shift_Del	G	-	p.P186fs
STAD	TCGA-CG-5723-01	NMT2	ENST00000540259.1,ENST00000535341.1,ENST00000378150.1,ENST00000378165.4	chr10	15154794:15154962:15161341:15161512:15170348:15170457,	15161342	15161512	15161374	15161374	Frame_Shift_Del	G	-	p.R380fs
STAD	TCGA-CG-5723-01	NPC1L1	ENST00000289547.4,ENST00000381160.3,ENST00000423141.1,ENST00000546276.1	chr7	44575854:44576027:44576440:44576541:44578415:44579941,	44576441	44576541	44576448	44576448	Frame_Shift_Del	C	-	p.Y559fs
STAD	TCGA-CG-5723-01	BTN2A1	ENST00000429381.1,ENST00000312541.5,ENST00000469185.1,ENST00000377600.2,ENST00000541522.1	chr6	26463471:26463753:26465412:26465634:26466180:26466201,	26465413	26465634	26465541	26465541	Frame_Shift_Del	G	-	p.S280fs
STAD	TCGA-CG-5723-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157548	106157549	Frame_Shift_Ins	-	C	p.S817fs
STAD	TCGA-CG-5723-01	ELL2	ENST00000237853.4	chr5	95231331:95231395:95233943:95234514:95236396:95236484,	95233944	95234514	95234467	95234467	Frame_Shift_Del	T	-	p.A335fs
STAD	TCGA-CG-5723-01	BAZ1A	ENST00000555273.1,ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35252324:35252438:35252967:35253133:35254982:35255207,	35252968	35253133	35253125	35253125	Frame_Shift_Del	T	-	p.M614fs
STAD	TCGA-CG-5723-01	HCRTR1	ENST00000403528.2	chr1	32084356:32084417:32084651:32084992:32086443:32086687,32084356:32084417:32084651:32084992:32085132:32085311,	32084652	32084992	32084832	32084832	Frame_Shift_Del	C	-	p.V13fs
STAD	TCGA-CG-5723-01	AMPD2	ENST00000528454.1	chr1	110162761:110162900:110167924:110168055:110168283:110168414,110163773:110163888:110167924:110168055:110168283:110168414,110166460:110166711:110167924:110168055:110168283:110168414,	110167925	110168055	110167985	110167985	Frame_Shift_Del	C	-	p.A105fs
STAD	TCGA-CG-5723-01	SH2D3A	ENST00000245908.6,ENST00000595681.1,ENST00000437152.3	chr19	6754710:6754742:6754841:6755326:6759604:6759681,	6754842	6755326	6754965	6754965	Frame_Shift_Del	G	-	p.S287fs
STAD	TCGA-CG-5723-01	SH3RF1	ENST00000511421.1,ENST00000508685.1,ENST00000284637.9	chr4	170051196:170051307:170057468:170057771:170076630:170076726,	170057469	170057771	170057551	170057551	Frame_Shift_Del	G	-	p.P329fs
STAD	TCGA-CG-5723-01	PANK3	ENST00000239231.6	chr5	167988397:167988521:167990893:167991070:167993017:167993069,	167990894	167991070	167991059	167991059	Frame_Shift_Del	C	-	p.G216fs
STAD	TCGA-CG-5723-01	SLC6A15	ENST00000450363.3,ENST00000266682.5	chr12	85279689:85279847:85285610:85286087:85306301:85306484,	85285611	85286087	85285889	85285889	Frame_Shift_Del	T	-	p.N4fs
STAD	TCGA-CG-5723-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115987018	115987018	Frame_Shift_Del	A	-	p.A1121fs
STAD	TCGA-CG-5723-01	SH3RF2	ENST00000511705.1	chr5	145435543:145435776:145439428:145439787:145441988:145442297,145435543:145435794:145439428:145439787:145441988:145442297,	145439429	145439787	145439558	145439558	Frame_Shift_Del	C	-	p.S562fs
STAD	TCGA-CG-5723-01	DAPK1	ENST00000469067.1,ENST00000469640.2,ENST00000408954.3,ENST00000358077.5,ENST00000472284.1,ENST00000491893.1,ENST00000489291.1	chr9	90219868:90220090:90252857:90252996:90254268:90254398,	90252858	90252996	90252903	90252904	Frame_Shift_Del	TT	-	p.110_110del
STAD	TCGA-CG-5723-01	BCAS2	ENST00000369541.3	chr1	115113320:115113371:115118210:115118372:115123919:115124012,115113320:115113371:115118210:115118372:115119308:115119379,	115118211	115118372	115118337	115118337	Frame_Shift_Del	T	-	p.N98fs
STAD	TCGA-CG-5723-01	SPINT1	ENST00000344051.4,ENST00000562057.1,ENST00000431806.1	chr15	41145985:41146079:41146594:41146720:41146836:41146887,41146013:41146127:41146594:41146720:41146836:41146887,41146257:41146284:41146594:41146720:41146836:41146887,	41146595	41146720	41146715	41146715	Frame_Shift_Del	A	-	p.E370fs
STAD	TCGA-CG-5723-01	TMIGD2	ENST00000301272.2	chr19	4294771:4294813:4297982:4298342:4302336:4302382,	4297983	4298342	4298064	4298064	Frame_Shift_Del	C	-	p.A109fs
STAD	TCGA-CG-5723-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389837	11389837	Frame_Shift_Del	A	-	p.W138fs
STAD	TCGA-CG-5723-01	CTNNA1	ENST00000540387.1,ENST00000518825.1,ENST00000355078.5,ENST00000521724.1,ENST00000302763.7	chr5	138240087:138240130:138253430:138253587:138260198:138260235,	138253431	138253587	138253516	138253516	Frame_Shift_Del	A	-	p.E492fs
STAD	TCGA-CG-5723-01	ABCA10	ENST00000269081.4,ENST00000416101.2,ENST00000523512.1,ENST00000518929.1,ENST00000432313.2,ENST00000523419.1,ENST00000522406.1	chr17	67211955:67212141:67212357:67212499:67215685:67215912,	67212358	67212499	67212448	67212448	Frame_Shift_Del	A	-	p.M195fs
STAD	TCGA-CG-5723-01	LRP1B	ENST00000389484.3,ENST00000437977.1,ENST00000442974.1	chr2	141027810:141027915:141031992:141032167:141055376:141055538,	141031993	141032167	141032034	141032034	Frame_Shift_Del	C	-	p.H4368fs
STAD	TCGA-CG-5723-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.P558fs
STAD	TCGA-CG-5723-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580509	7580509	Frame_Shift_Del	A	-	p.L1362X
STAD	TCGA-CG-5723-01	WARS	ENST00000556504.1,ENST00000392882.2,ENST00000557722.1,ENST00000556645.1,ENST00000358655.4,ENST00000554084.1,ENST00000355338.2,ENST00000556435.1,ENST00000553395.1,ENST00000344102.5,ENST00000557135.1,ENST00000557297.1	chr14	100820164:100820206:100820783:100820903:100826890:100826999,	100820784	100820903	100820838	100820838	Frame_Shift_Del	C	-	p.G163fs
STAD	TCGA-CG-5723-01	CXCL16	ENST00000293778.6,ENST00000575168.1,ENST00000574412.1	chr17	4637883:4637947:4638386:4638803:4641702:4641785,	4638387	4638803	4638521	4638521	Frame_Shift_Del	T	-	p.N214fs
STAD	TCGA-CG-5723-01	ASAP1	ENST00000520342.1,ENST00000521075.1,ENST00000357668.1,ENST00000520927.1,ENST00000519169.1,ENST00000518721.1,ENST00000524367.1	chr8	131200354:131200429:131226801:131226947:131249167:131249240,	131226802	131226947	131226887	131226887	Frame_Shift_Del	A	-	p.L107fs
STAD	TCGA-CG-5723-01	ACAT2	ENST00000367048.4,ENST00000541436.1	chr6	160189542:160189660:160196201:160196345:160197181:160197304,	160196202	160196345	160196216	160196216	Frame_Shift_Del	A	-	p.A168fs
STAD	TCGA-CG-5723-01	FZD6	ENST00000540287.1,ENST00000521195.1,ENST00000523933.1,ENST00000522566.1,ENST00000519011.1,ENST00000523739.1,ENST00000358755.4	chr8	104337619:104337726:104340495:104340644:104341882:104342199,	104340496	104340644	104340619	104340619	Frame_Shift_Del	T	-	p.G505fs
STAD	TCGA-CG-5723-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48602215:48602413:48602541:48602634:48602842:48602929,	48602542	48602634	48602622	48602622	Frame_Shift_Del	G	-	p.P2847fs
STAD	TCGA-CG-5723-01	ANK3	ENST00000514197.1	chr10	61819149:61819188:61819455:61819791:61822868:61823012,	61819456	61819791	61819650	61819651	Frame_Shift_Ins	-	G	p.L1625fs
STAD	TCGA-CG-5723-01	ANK3	ENST00000355288.2,ENST00000503366.1,ENST00000373820.1,ENST00000373827.2	chr10	61819149:61819188:61819455:61819764:61822868:61823012,	61819456	61819764	61819650	61819651	Frame_Shift_Ins	-	G	p.L1625fs
STAD	TCGA-CG-5723-01	PHF10	ENST00000366780.4	chr6	170116050:170116184:170117918:170117996:170118883:170119008,	170117919	170117996	170117976	170117977	Frame_Shift_Del	TG	-	p.118_118del
STAD	TCGA-CG-5723-01	PHF10	ENST00000480008.1,ENST00000339209.4	chr6	170116050:170116184:170117918:170118002:170118883:170119008,	170117919	170118002	170117976	170117977	Frame_Shift_Del	TG	-	p.118_118del
STAD	TCGA-CG-5723-01	CLCA4	ENST00000370563.3,ENST00000263723.5	chr1	87025614:87025755:87025893:87026041:87029343:87029452,	87025894	87026041	87026013	87026013	Frame_Shift_Del	A	-	p.G140fs
STAD	TCGA-CG-5723-01	UBAC2	ENST00000468067.1	chr13	99853145:99853193:99853682:99853821:99890680:99890808,	99853683	99853821	99853696	99853696	Frame_Shift_Del	T	-	p.E10fs
STAD	TCGA-CG-5723-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134568	128134568	Frame_Shift_Del	T	-	p.V407fs
STAD	TCGA-CG-5723-01	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335733	173335733	Frame_Shift_Del	T	-	p.T225fs
STAD	TCGA-CG-5723-01	TDRD1	ENST00000422662.1,ENST00000369282.1,ENST00000251864.2,ENST00000369281.2	chr10	115987668:115987715:115987796:115987884:115991244:115991486,	115987797	115987884	115987869	115987869	Frame_Shift_Del	A	-	p.M1174fs
STAD	TCGA-BR-A4PF-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579442	7579442	Frame_Shift_Del	G	-	p.P82fs
STAD	TCGA-HU-A4GQ-01	POSTN	ENST00000379742.4	chr13	38143880:38143958:38144716:38144806:38145505:38145565,38143880:38143958:38144716:38144806:38151889:38151934,	38144717	38144806	38144790	38144790	Frame_Shift_Del	T	-	p.Y733fs
STAD	TCGA-HU-A4GQ-01	GATA3	ENST00000379328.3	chr10	8097249:8097859:8100267:8100804:8105955:8106101,	8100268	8100804	8100746	8100746	Frame_Shift_Del	G	-	p.L240fs
STAD	TCGA-HU-A4GQ-01	PXK	ENST00000383715.4,ENST00000302779.5,ENST00000356151.2,ENST00000484288.1,ENST00000479241.1	chr3	58318713:58318817:58368240:58368427:58376308:58376386,58355157:58355205:58368240:58368427:58376308:58376386,	58368241	58368427	58368270	58368271	Frame_Shift_Ins	-	A	p.P77fs
STAD	TCGA-HU-A4GQ-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323946	235323947	Frame_Shift_Ins	-	T	p.T82fs
STAD	TCGA-HU-A4GQ-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618271	201618272	Frame_Shift_Ins	-	C	p.T159fs
STAD	TCGA-HU-A4GQ-01	RABL2B	ENST00000436958.1	chr22	51207468:51207552:51207852:51207980:51214199:51214261,	51207853	51207980	51207957	51207957	Frame_Shift_Del	T	-	p.S145fs
STAD	TCGA-HU-A4GQ-01	RABL2B	ENST00000425098.1	chr22	51207468:51207552:51207882:51207980:51214199:51214261,	51207883	51207980	51207957	51207957	Frame_Shift_Del	T	-	p.S145fs
STAD	TCGA-HU-A4GQ-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635393	32635393	Frame_Shift_Del	T	-	p.C824fs
STAD	TCGA-HU-A4GQ-01	RHBDD1	ENST00000409053.1,ENST00000392062.2,ENST00000341329.3,ENST00000473218.1	chr2	227771566:227771597:227773537:227773594:227778923:227779067,	227773538	227773594	227773542	227773542	Frame_Shift_Del	T	-	p.G220fs
STAD	TCGA-HU-A4GQ-01	ZMYM5	ENST00000535942.1	chr13	20409616:20409829:20411795:20411961:20412839:20413125,20409616:20409829:20411795:20411961:20425494:20425588,	20411796	20411961	20411844	20411844	Frame_Shift_Del	T	-	p.G331fs
STAD	TCGA-HU-A4GQ-01	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110201	120110201	Frame_Shift_Del	G	-	p.T85fs
STAD	TCGA-HU-A4GQ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560444	32560445	Frame_Shift_Ins	-	A	p.S190fs
STAD	TCGA-HU-A4GQ-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338279	19338279	Frame_Shift_Del	C	-	p.A617fs
STAD	TCGA-HU-A4GQ-01	SYBU	ENST00000532594.1	chr8	110592164:110592231:110598245:110598391:110620139:110620228,	110598246	110598391	110598313	110598314	Frame_Shift_Ins	-	T	p.S169fs
STAD	TCGA-HU-A4GQ-01	SYBU	ENST00000533394.1	chr8	110592164:110592231:110598288:110598391:110631070:110631268,110592164:110592231:110598288:110598391:110620139:110620228,110592164:110592231:110598288:110598391:110615585:110615683,	110598289	110598391	110598313	110598314	Frame_Shift_Ins	-	T	p.S169fs
STAD	TCGA-HU-A4GQ-01	NOTCH4	ENST00000375023.3,ENST00000473562.1	chr6	32187905:32188061:32188181:32188418:32188532:32188655,	32188182	32188418	32188294	32188295	Frame_Shift_Ins	-	C	p.G349fs
STAD	TCGA-HU-A4GQ-01	GKN2	ENST00000328895.4,ENST00000481498.1	chr2	69174278:69174389:69177257:69177395:69177833:69177887,	69177258	69177395	69177322	69177322	Frame_Shift_Del	T	-	p.N47fs
STAD	TCGA-HU-A4GQ-01	ARHGAP4	ENST00000393721.1,ENST00000350060.5,ENST00000494302.1,ENST00000537206.1,ENST00000370028.3,ENST00000370016.1,ENST00000420383.1,ENST00000470209.1,ENST00000404127.2	chrX	153176582:153176643:153178153:153178256:153178477:153178505,	153178154	153178256	153178181	153178182	Frame_Shift_Del	AA	-	p.545_546del
STAD	TCGA-HU-A4GQ-01	ENKUR	ENST00000483339.2	chr10	25279391:25279538:25284574:25284798:25304788:25304889,	25284575	25284798	25284792	25284792	Frame_Shift_Del	T	-	p.N77fs
STAD	TCGA-HU-A4GQ-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.F54fs
STAD	TCGA-HU-A4GQ-01	SMYD2	ENST00000491455.1,ENST00000366957.5,ENST00000471645.1,ENST00000415093.2	chr1	214478534:214478593:214488104:214488215:214491421:214491482,	214488105	214488215	214488155	214488156	Frame_Shift_Ins	-	G	p.F96fs
STAD	TCGA-HU-A4GQ-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225367708:225367789:225368368:225368539:225370672:225370849,	225368369	225368539	225368388	225368388	Frame_Shift_Del	T	-	p.N459fs
STAD	TCGA-HU-A4GQ-01	PCSK9	ENST00000302118.5	chr1	55509515:55509707:55512195:55512319:55517950:55518084,	55512196	55512319	55512313	55512313	Frame_Shift_Del	C	-	p.Q172fs
STAD	TCGA-HU-A4GQ-01	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99065312:99065497:99071202:99071329:99074054:99074180,	99071203	99071329	99071207	99071207	Frame_Shift_Del	A	-	p.N599fs
STAD	TCGA-HU-A4GQ-01	PTPN3	ENST00000412145.1,ENST00000374541.2	chr9	112182703:112182880:112184997:112185132:112189229:112189303,	112184998	112185132	112185106	112185106	Frame_Shift_Del	T	-	p.K343fs
STAD	TCGA-HU-A4GQ-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107959253:107959386:107960218:107960350:107965117:107965241,	107960219	107960350	107960253	107960253	Frame_Shift_Del	T	-	p.V449fs
STAD	TCGA-HU-A4GQ-01	ETV6	ENST00000396373.4	chr12	12006360:12006495:12022357:12022903:12037378:12037521,	12022358	12022903	12022502	12022502	Frame_Shift_Del	C	-	p.S203fs
STAD	TCGA-HU-A4GQ-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507481	74507481	Frame_Shift_Del	A	-	p.P379fs
STAD	TCGA-HU-A4GQ-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507481	74507481	Frame_Shift_Del	A	-	p.P379fs
STAD	TCGA-HU-A4GQ-01	TPP2	ENST00000376065.4,ENST00000376052.3	chr13	103257142:103257271:103266450:103266546:103268745:103268850,	103266451	103266546	103266498	103266498	Frame_Shift_Del	A	-	p.I114fs
STAD	TCGA-HU-A4GQ-01	PTP4A3	ENST00000520105.1,ENST00000349124.1	chr8	142435147:142435240:142437038:142437169:142441026:142441394,	142437039	142437169	142437063	142437063	Frame_Shift_Del	C	-	p.A74fs
STAD	TCGA-HU-A4GQ-01	POLE3	ENST00000374169.3,ENST00000374171.4,ENST00000475080.1	chr9	116171223:116171263:116171889:116172008:116172334:116172420,	116171890	116172008	116171909	116171910	Frame_Shift_Ins	-	G	p.P84fs
STAD	TCGA-HU-A4GQ-01	RRNAD1	ENST00000368216.4,ENST00000519086.1	chr1	156698800:156699007:156701782:156701907:156702072:156702265,	156701783	156701907	156701791	156701792	Frame_Shift_Del	CA	-	p.40_40del
STAD	TCGA-HU-A4GQ-01	MBNL2	ENST00000343600.4,ENST00000376673.3,ENST00000397601.1,ENST00000345429.6	chr13	97995269:97995470:97999057:97999321:98009735:98009889,	97999058	97999321	97999120	97999120	Frame_Shift_Del	C	-	p.H201fs
STAD	TCGA-HU-A4GQ-01	TNXB	ENST00000375247.2,ENST00000498094.1,ENST00000451343.1,ENST00000490077.1,ENST00000375244.3	chr6	32010042:32010139:32010231:32010383:32010475:32010608,	32010232	32010383	32010293	32010293	Frame_Shift_Del	C	-	p.G4048fs
STAD	TCGA-HU-A4GQ-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672999	151673000	Frame_Shift_Ins	-	C	p.I1158fs
STAD	TCGA-HU-A4GQ-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075899	101075899	Frame_Shift_Del	A	-	p.L366fs
STAD	TCGA-HU-A4GQ-01	AGBL5	ENST00000360131.4	chr2	27291915:27291962:27292440:27292574:27292959:27293488,27291499:27291612:27292440:27292574:27292959:27293488,	27292441	27292574	27292517	27292517	Frame_Shift_Del	C	-	p.T811fs
STAD	TCGA-HU-A4GQ-01	NARS	ENST00000586807.1,ENST00000256854.5,ENST00000423481.2	chr18	55273847:55273983:55274365:55274565:55274675:55274715,	55274366	55274565	55274479	55274480	Frame_Shift_Ins	-	A	p.L296fs
STAD	TCGA-HU-A4GQ-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70779668:70779723:70782310:70782454:70785230:70785509,	70782311	70782454	70782336	70782336	Frame_Shift_Del	T	-	p.D365fs
STAD	TCGA-HU-A4GQ-01	KATNBL1	ENST00000557877.1,ENST00000540594.1,ENST00000559462.1,ENST00000558473.1,ENST00000256544.3,ENST00000560671.1,ENST00000560108.1,ENST00000560310.1,ENST00000560308.1	chr15	34440858:34440951:34444990:34445270:34446844:34446885,	34444991	34445270	34444996	34444996	Frame_Shift_Del	A	-	p.S145fs
STAD	TCGA-HU-A4GQ-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5402280:5402456:5410005:5410995:5413685:5414112,	5410006	5410995	5410321	5410321	Frame_Shift_Del	C	-	p.E1302fs
STAD	TCGA-HU-A4GQ-01	EEFSEC	ENST00000483457.1	chr3	127965678:127965886:127980970:127981067:128060075:128060351,	127980971	127981067	127981010	127981010	Frame_Shift_Del	G	-	p.P188fs
STAD	TCGA-HU-A4GQ-01	PLIN2	ENST00000276914.2	chr9	19118318:19118453:19119647:19119829:19120877:19121163,	19119648	19119829	19119688	19119689	Frame_Shift_Ins	-	T	p.S246fs
STAD	TCGA-HU-A4GQ-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073336	33073336	Frame_Shift_Del	G	-	p.P250fs
STAD	TCGA-HU-A4GQ-01	MOB3A	ENST00000357066.3	chr19	2076809:2077012:2078138:2078678:2085173:2085324,	2078139	2078678	2078279	2078279	Frame_Shift_Del	C	-	p.G94fs
STAD	TCGA-HU-A4GQ-01	ZDHHC4	ENST00000396713.2,ENST00000405731.3,ENST00000396709.1,ENST00000396707.2,ENST00000335965.6,ENST00000396706.2	chr7	6622936:6623062:6624646:6624891:6628247:6628550,	6624647	6624891	6624647	6624648	Frame_Shift_Del	GT	-	p.166_166del
STAD	TCGA-HU-A4GQ-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134463921:134464009:134503895:134503959:134511319:134511423,	134503896	134503959	134503931	134503931	Frame_Shift_Del	A	-	p.L114X
STAD	TCGA-HU-A4GQ-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35234212:35234281:35236488:35236629:35240464:35240585,	35236489	35236629	35236512	35236513	Frame_Shift_Ins	-	A	p.L150fs
STAD	TCGA-HU-A4GQ-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800273	28800273	Frame_Shift_Del	C	-	p.S354fs
STAD	TCGA-HU-A4GQ-01	NCEH1	ENST00000424772.1,ENST00000538775.1	chr3	172363412:172363482:172365651:172365904:172428636:172428842,	172365652	172365904	172365825	172365826	Frame_Shift_Ins	-	T	p.S105fs
STAD	TCGA-HU-A4GQ-01	NCEH1	ENST00000273512.3	chr3	172363412:172363482:172365675:172365904:172428636:172428842,	172365676	172365904	172365825	172365826	Frame_Shift_Ins	-	T	p.S105fs
STAD	TCGA-HU-A4GQ-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154750	19154750	Frame_Shift_Del	T	-	p.S19fs
STAD	TCGA-HU-A4GQ-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Frame_Shift_Del	A	-	p.L474X
STAD	TCGA-HU-A4GQ-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Frame_Shift_Del	A	-	p.L474X
STAD	TCGA-HU-A4GQ-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232985	71232986	Frame_Shift_Del	CT	-	p.455_455del
STAD	TCGA-HU-A4GQ-01	FOLH1	ENST00000340334.7,ENST00000525826.1,ENST00000356696.3,ENST00000533034.1,ENST00000458311.2,ENST00000256999.2,ENST00000343844.4	chr11	49178268:49178359:49179503:49179595:49186256:49186324,	49179504	49179595	49179535	49179535	Frame_Shift_Del	T	-	p.S501fs
STAD	TCGA-HU-A4GQ-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373687	104373688	Frame_Shift_Ins	-	A	p.S82fs
STAD	TCGA-HU-A4GQ-01	RAB3GAP2	ENST00000358951.2	chr1	220335539:220335610:220338074:220338141:220340634:220340741,	220338075	220338141	220338127	220338127	Frame_Shift_Del	A	-	p.V1035fs
STAD	TCGA-HU-A4GQ-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167473	Frame_Shift_Del	A	-	p.L72fs
STAD	TCGA-HU-A4GQ-01	ODF2	ENST00000444993.2,ENST00000351030.3	chr9	131221845:131221936:131222828:131222945:131223220:131223289,	131222829	131222945	131222859	131222859	Frame_Shift_Del	C	-	p.T95fs
STAD	TCGA-HU-A4GQ-01	ODF2	ENST00000448249.3,ENST00000469582.2,ENST00000535026.1	chr9	131221845:131221936:131222791:131222945:131223220:131223289,	131222792	131222945	131222859	131222859	Frame_Shift_Del	C	-	p.T95fs
STAD	TCGA-HU-A4GQ-01	IL16	ENST00000302987.4,ENST00000394660.2,ENST00000360547.5,ENST00000560241.1,ENST00000559388.1,ENST00000559383.1	chr15	81561878:81561989:81565430:81565545:81571157:81571231,	81565431	81565545	81565500	81565501	Frame_Shift_Ins	-	T	p.I249fs
STAD	TCGA-HU-A4GQ-01	ACADS	ENST00000242592.4	chr12	121174788:121174938:121175158:121175270:121175639:121175791,	121175159	121175270	121175240	121175240	Frame_Shift_Del	A	-	p.D147fs
STAD	TCGA-HU-A4GQ-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021238	23021239	Frame_Shift_Ins	-	T	p.K33fs
STAD	TCGA-HU-A4GQ-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-HU-A4GQ-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-HU-A4GQ-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-HU-A4GQ-01	WWTR1	ENST00000465804.1,ENST00000467467.1,ENST00000360632.3	chr3	149260121:149260324:149290650:149290787:149374662:149375093,	149290651	149290787	149290774	149290774	Frame_Shift_Del	T	-	p.I149fs
STAD	TCGA-HU-A4GQ-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472698	92472698	Frame_Shift_Del	T	-	p.K541fs
STAD	TCGA-HU-A4GQ-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770652	Frame_Shift_Del	G	-	p.P1127fs
STAD	TCGA-HU-A4GQ-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406040	91406040	Frame_Shift_Del	T	-	p.R291fs
STAD	TCGA-HU-A4GQ-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.A110fs
STAD	TCGA-HU-A4GQ-01	OSBPL7	ENST00000392507.3,ENST00000007414.3	chr17	45890952:45891200:45891886:45891980:45892580:45892718,	45891887	45891980	45891906	45891907	Frame_Shift_Ins	-	C	p.G444fs
STAD	TCGA-HU-A4GQ-01	ACTL6A	ENST00000450518.2,ENST00000468767.2,ENST00000429709.2,ENST00000494843.1,ENST00000392662.1,ENST00000487978.1	chr3	179287611:179287688:179287854:179288029:179291156:179291257,	179287855	179288029	179288016	179288016	Frame_Shift_Del	A	-	p.L88fs
STAD	TCGA-HU-A4GQ-01	DHX15	ENST00000336812.4	chr4	24544562:24544649:24550477:24550645:24556347:24556566,	24550478	24550645	24550501	24550502	Frame_Shift_Ins	-	T	p.Q409fs
STAD	TCGA-HU-A4GQ-01	PPP4C	ENST00000279387.7,ENST00000563732.1,ENST00000561610.1,ENST00000563597.1	chr16	30093804:30093855:30094714:30094888:30094975:30095101,30094066:30094168:30094714:30094888:30094975:30095101,	30094715	30094888	30094825	30094826	Frame_Shift_Del	TG	-	p.138_138del
STAD	TCGA-HU-A4GQ-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469778	161469778	Frame_Shift_Del	A	-	p.K158fs
STAD	TCGA-BR-A4CR-01	SLC7A10	ENST00000590036.1	chr19	33703756:33703908:33706674:33706879:33716458:33716704,	33706675	33706879	33706778	33706778	Frame_Shift_Del	C	-	p.V85fs
STAD	TCGA-BR-A4CR-01	PRKD1	ENST00000331968.5,ENST00000415220.2	chr14	30102074:30102152:30103623:30103747:30105495:30105700,	30103624	30103747	30103740	30103740	Frame_Shift_Del	T	-	p.T400fs
STAD	TCGA-BR-A44U-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448297	56448298	Frame_Shift_Ins	-	G	p.R117fs
STAD	TCGA-EQ-8122-01	AMD1	ENST00000368877.5	chr6	111208707:111208794:111210059:111210186:111211456:111211559,111195987:111196418:111210059:111210186:111211456:111211559,	111210060	111210186	111210105	111210106	Frame_Shift_Del	AT	-	p.81_81del
STAD	TCGA-EQ-8122-01	DHRS7	ENST00000216500.5,ENST00000536410.2,ENST00000557185.1	chr14	60611523:60611731:60616070:60616286:60616782:60616835,	60616071	60616286	60616089	60616089	Frame_Shift_Del	C	-	p.N319fs
STAD	TCGA-EQ-8122-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577141	7577141	Frame_Shift_Del	C	-	p.G266fs
STAD	TCGA-EQ-8122-01	GSDMB	ENST00000394175.2	chr17	38064428:38064467:38065210:38065295:38066008:38066177,38063213:38063240:38065210:38065295:38066008:38066177,38062447:38062524:38065210:38065295:38066008:38066177,	38065211	38065295	38065247	38065254	Frame_Shift_Del	CTCGATAG	-	p.207_209del
STAD	TCGA-CG-4440-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762331	36762332	Frame_Shift_Ins	-	A	p.E755fs
STAD	TCGA-HU-A4G6-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27100852	27100852	Frame_Shift_Del	C	-	p.G1378fs
STAD	TCGA-CG-5733-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.A150fs
STAD	TCGA-CG-5733-01	PDE3B	ENST00000282096.4,ENST00000455098.2	chr11	14865372:14865572:14880588:14880792:14882750:14882912,	14880589	14880792	14880754	14880754	Frame_Shift_Del	A	-	p.L895fs
STAD	TCGA-CG-5733-01	RAB3IP	ENST00000378809.4,ENST00000362025.5,ENST00000325555.9,ENST00000552199.1,ENST00000547591.1,ENST00000417413.3,ENST00000247833.7,ENST00000550536.1,ENST00000483530.2,ENST00000378815.6	chr12	70149350:70149439:70150184:70150443:70178499:70178595,	70150185	70150443	70150275	70150276	Frame_Shift_Del	AG	-	p.130_130del
STAD	TCGA-CG-5733-01	FBP1	ENST00000415431.1,ENST00000414122.1,ENST00000375326.4	chr9	97372202:97372343:97380049:97380142:97382610:97382773,	97380050	97380142	97380085	97380086	Frame_Shift_Ins	-	A	p.V131fs
STAD	TCGA-CG-5733-01	STK10	ENST00000176763.5	chr5	171509964:171510088:171517235:171517366:171520415:171520581,	171517236	171517366	171517345	171517345	Frame_Shift_Del	T	-	p.T526fs
STAD	TCGA-CG-5733-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924026	82924027	Frame_Shift_Ins	-	T	p.G708fs
STAD	TCGA-CG-5733-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-CG-5733-01	MECOM	ENST00000494292.1	chr3	168849216:168849319:168861485:168861620:169098974:169099312,	168861486	168861620	168861605	168861605	Frame_Shift_Del	A	-	p.Y131fs
STAD	TCGA-CG-5733-01	KCNMB3	ENST00000392686.2	chr3	178957608:178957852:178960596:178961072:178962282:178962481,	178960597	178961072	178960921	178960921	Frame_Shift_Del	T	-	p.K204fs
STAD	TCGA-CG-5733-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675269	176675269	Frame_Shift_Del	A	-	p.S1528fs
STAD	TCGA-CG-5733-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618899	618900	Frame_Shift_Ins	-	G	p.G554fs
STAD	TCGA-CG-5733-01	IGFBP7	ENST00000295666.4,ENST00000537922.1	chr4	57899360:57899477:57906989:57907099:57976042:57976112,	57906990	57907099	57907077	57907077	Frame_Shift_Del	G	-	p.K167fs
STAD	TCGA-CG-5733-01	PLCB1	ENST00000378641.3	chr20	8770824:8770908:8782702:8782820:8862268:8865547,	8782703	8782820	8782772	8782772	Frame_Shift_Del	C	-	p.L1164fs
STAD	TCGA-CG-5733-01	S100A2	ENST00000497140.1	chr1	153534052:153534067:153536209:153536329:153537981:153538018,	153536210	153536329	153536253	153536254	Frame_Shift_Ins	-	C	p.E33fs
STAD	TCGA-CG-5733-01	S100A2	ENST00000368709.1	chr1	153533824:153534067:153536209:153536363:153539177:153539231,	153536210	153536363	153536253	153536254	Frame_Shift_Ins	-	C	p.E33fs
STAD	TCGA-CG-5733-01	RPS6KA4	ENST00000528057.1,ENST00000532885.1,ENST00000334205.4,ENST00000528355.1,ENST00000530504.1,ENST00000294261.4	chr11	64129378:64129474:64132772:64132937:64135603:64135648,	64132773	64132937	64132907	64132907	Frame_Shift_Del	C	-	p.S347fs
STAD	TCGA-CG-5733-01	MMP10	ENST00000539681.1	chr11	102649943:102650092:102650234:102650476:102651217:102651359,	102650235	102650476	102650394	102650395	Frame_Shift_Ins	-	T	p.I63fs
STAD	TCGA-CG-5733-01	MGAT4A	ENST00000393487.1,ENST00000409391.1,ENST00000414521.2,ENST00000264968.3	chr2	99260385:99260516:99261890:99262005:99271907:99271983,	99261891	99262005	99261956	99261956	Frame_Shift_Del	T	-	p.N275fs
STAD	TCGA-CG-5733-01	GBA	ENST00000427500.3	chr1	155208354:155208441:155209676:155209868:155210420:155210508,	155209677	155209868	155209816	155209817	Frame_Shift_Ins	-	AC	p.V56fs
STAD	TCGA-CG-5733-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000446180.1,ENST00000388738.3	chr4	123164152:123164223:123165008:123165182:123166174:123166295,	123165009	123165182	123165029	123165029	Frame_Shift_Del	A	-	p.E1588fs
STAD	TCGA-CG-5733-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000542921.1	chr10	64957170:64957323:64958272:64958487:64966354:64967485,64957170:64957323:64958272:64958487:64960235:64960437,	64958273	64958487	64958470	64958470	Frame_Shift_Del	T	-	p.N1765fs
STAD	TCGA-CG-5733-01	PIP5K1C	ENST00000589578.1,ENST00000539785.1,ENST00000537021.1,ENST00000335312.3	chr19	3643240:3643379:3644084:3644249:3645971:3646056,	3644085	3644249	3644115	3644115	Frame_Shift_Del	C	-	p.A494fs
STAD	TCGA-CG-5733-01	PHACTR4	ENST00000373836.3,ENST00000373839.3	chr1	28818161:28818299:28819526:28819603:28823045:28823668,	28819527	28819603	28819557	28819557	Frame_Shift_Del	A	-	p.F692fs
STAD	TCGA-CG-5733-01	TEP1	ENST00000545983.1,ENST00000262715.5,ENST00000556935.1,ENST00000557314.1,ENST00000555008.1,ENST00000555727.1	chr14	20845758:20845912:20846182:20846395:20846538:20846694,	20846183	20846395	20846338	20846338	Frame_Shift_Del	C	-	p.V1856fs
STAD	TCGA-CG-5733-01	ZXDC	ENST00000389709.3	chr3	126160607:126160789:126178495:126178580:126180377:126181063,	126178496	126178580	126178522	126178522	Frame_Shift_Del	T	-	p.K729fs
STAD	TCGA-CG-5733-01	KCTD9	ENST00000519665.1,ENST00000221200.4	chr8	25286777:25287489:25290019:25290153:25290845:25290951,	25290020	25290153	25290078	25290078	Frame_Shift_Del	T	-	p.N332fs
STAD	TCGA-CG-5733-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000519092.1,ENST00000360863.6,ENST00000519408.1	chr8	101084372:101084458:101092361:101092583:101105674:101105737,	101092362	101092583	101092489	101092490	Frame_Shift_Ins	-	T	p.I71fs
STAD	TCGA-CG-5733-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091522	35091523	Frame_Shift_Ins	-	G	p.T788fs
STAD	TCGA-CG-5733-01	DYNC1I1	ENST00000519371.1,ENST00000359388.4,ENST00000324972.6,ENST00000437599.1,ENST00000457059.1,ENST00000447467.2,ENST00000537881.1	chr7	95606823:95606913:95614126:95614289:95616367:95616467,	95614127	95614289	95614280	95614280	Frame_Shift_Del	A	-	p.E262fs
STAD	TCGA-CG-5733-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1266053	1266053	Frame_Shift_Del	C	-	p.T2648fs
STAD	TCGA-CG-5733-01	NDE1	ENST00000396354.1,ENST00000572967.1,ENST00000576502.1,ENST00000396353.2,ENST00000574109.1,ENST00000342673.5,ENST00000396355.1	chr16	15785098:15785180:15788021:15788113:15790565:15790623,	15788022	15788113	15788039	15788039	Frame_Shift_Del	G	-	p.T240fs
STAD	TCGA-CG-5733-01	RAD23A	ENST00000316856.3,ENST00000588329.1,ENST00000588826.2,ENST00000592268.1,ENST00000586534.1	chr19	13058667:13058823:13058990:13059172:13059499:13059627,13058661:13058823:13058990:13059172:13059310:13059366,	13058991	13059172	13059096	13059096	Frame_Shift_Del	C	-	p.H113fs
STAD	TCGA-CG-5733-01	DBF4	ENST00000431138.1	chr7	87505914:87506093:87507367:87507448:87514293:87514473,	87507368	87507448	87507389	87507389	Frame_Shift_Del	A	-	p.E23fs
STAD	TCGA-CG-5733-01	DBF4	ENST00000486925.1,ENST00000430279.1,ENST00000265728.1	chr7	87505914:87506093:87507367:87507540:87514293:87514473,	87507368	87507540	87507389	87507389	Frame_Shift_Del	A	-	p.E23fs
STAD	TCGA-CG-5733-01	BMPR1A	ENST00000372037.3	chr10	88649818:88649981:88651883:88651986:88659550:88659647,	88651884	88651986	88651973	88651974	Frame_Shift_Ins	-	T	p.D107fs
STAD	TCGA-CG-5733-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1271471	1271472	Frame_Shift_Del	GC	-	p.4454_4454del
STAD	TCGA-CG-5733-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666959	157666960	Frame_Shift_Ins	-	T	p.R272fs
STAD	TCGA-CG-5733-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666959	157666960	Frame_Shift_Ins	-	T	p.R272fs
STAD	TCGA-CG-5733-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666959	157666960	Frame_Shift_Ins	-	T	p.R272fs
STAD	TCGA-CG-5733-01	FCHSD2	ENST00000409314.1,ENST00000311172.7,ENST00000422375.1,ENST00000409853.1,ENST00000409418.4	chr11	72700045:72700142:72712034:72712179:72726853:72726930,	72712035	72712179	72712093	72712093	Frame_Shift_Del	T	-	p.N110fs
STAD	TCGA-CG-5733-01	EXO1	ENST00000366548.3,ENST00000518483.1,ENST00000348581.5	chr1	242042341:242042645:242045217:242045319:242048615:242048809,	242045218	242045319	242045292	242045292	Frame_Shift_Del	A	-	p.S728X
STAD	TCGA-CG-5733-01	ZC3H14	ENST00000556000.1,ENST00000554020.1,ENST00000251038.5,ENST00000555900.1,ENST00000393514.5	chr14	89068378:89068427:89069171:89069404:89073586:89073707,	89069172	89069404	89069238	89069238	Frame_Shift_Del	C	-	p.S527fs
STAD	TCGA-CG-5733-01	ZC3H14	ENST00000555755.1	chr14	89068378:89068427:89069171:89069389:89073586:89073707,	89069172	89069389	89069238	89069238	Frame_Shift_Del	C	-	p.S527fs
STAD	TCGA-CG-5733-01	SNX25	ENST00000264694.8,ENST00000504273.1,ENST00000504959.1	chr4	186263129:186263270:186267690:186267804:186274638:186274756,186263129:186263270:186267690:186267804:186272598:186272763,	186267691	186267804	186267704	186267705	Frame_Shift_Ins	-	A	p.L570fs
STAD	TCGA-CG-5733-01	ITGA10	ENST00000538811.1	chr1	145525015:145525117:145527612:145527724:145530266:145530358,	145527613	145527724	145527707	145527708	Frame_Shift_Ins	-	G	p.V49fs
STAD	TCGA-CG-5733-01	CBX1	ENST00000495350.1,ENST00000225603.4,ENST00000402583.1	chr17	46153362:46153540:46154226:46154403:46178629:46178649,	46154227	46154403	46154355	46154355	Frame_Shift_Del	T	-	p.Q5fs
STAD	TCGA-CG-5733-01	NCOR1	ENST00000395851.1,ENST00000458113.2,ENST00000268712.3	chr17	15974722:15974979:15975458:15975542:15976742:15976883,	15975459	15975542	15975514	15975514	Frame_Shift_Del	C	-	p.S1297fs
STAD	TCGA-CG-5733-01	ACVR1B	ENST00000563121.1	chr12	52377818:52377950:52378975:52379132:52385646:52385776,	52378976	52379132	52379121	52379121	Frame_Shift_Del	G	-	p.V416fs
STAD	TCGA-CG-5733-01	TRIP11	ENST00000554357.1,ENST00000267622.4	chr14	92466311:92466452:92469762:92472792:92473983:92474196,	92469763	92472792	92472698	92472698	Frame_Shift_Del	T	-	p.K541fs
STAD	TCGA-CG-5733-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417800	40417800	Frame_Shift_Del	G	-	p.R429fs
STAD	TCGA-CG-5733-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1	chr11	47827704:47827864:47828621:47828692:47829947:47830081,	47828622	47828692	47828647	47828648	Frame_Shift_Del	AG	-	p.807_808del
STAD	TCGA-CG-5733-01	CYP2F1	ENST00000331105.2,ENST00000532164.2	chr19	41630759:41630811:41631397:41631539:41633805:41634159,	41631398	41631539	41631480	41631481	Frame_Shift_Ins	-	T	p.H412fs
STAD	TCGA-CG-5733-01	VAC14	ENST00000261776.5,ENST00000568548.1,ENST00000563662.1,ENST00000568886.1	chr16	70765397:70765530:70778325:70778482:70796442:70796508,	70778326	70778482	70778435	70778435	Frame_Shift_Del	G	-	p.A474fs
STAD	TCGA-CG-5733-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384334	12384334	Frame_Shift_Del	T	-	p.I294fs
STAD	TCGA-CG-5733-01	TMC1	ENST00000297784.5,ENST00000340019.3	chr9	75242940:75242979:75263512:75263580:75303624:75303672,	75263513	75263580	75263574	75263574	Frame_Shift_Del	A	-	p.P3fs
STAD	TCGA-CG-5733-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267481	1267481	Frame_Shift_Del	C	-	p.T3124fs
STAD	TCGA-CG-5733-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499815	42499816	Frame_Shift_Ins	-	A	p.L223fs
STAD	TCGA-CG-5733-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128510	202128510	Frame_Shift_Del	C	-	p.R113fs
STAD	TCGA-CG-5733-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128510	202128510	Frame_Shift_Del	C	-	p.R113fs
STAD	TCGA-CG-5733-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128510	202128510	Frame_Shift_Del	C	-	p.R113fs
STAD	TCGA-CG-5733-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789629	3789629	Frame_Shift_Del	A	-	p.G1411fs
STAD	TCGA-CG-5733-01	PPOX	ENST00000539753.1	chr1	161136889:161137024:161140198:161140309:161140409:161140559,161138782:161138973:161140198:161140309:161140409:161140559,161139695:161139814:161140198:161140309:161140409:161140559,161139474:161139510:161140198:161140309:161140409:161140559,	161140199	161140309	161140288	161140288	Frame_Shift_Del	C	-	p.S359fs
STAD	TCGA-CG-5733-01	PTK7	ENST00000230418.4,ENST00000461389.1	chr6	43112957:43113170:43114355:43114436:43126554:43126706,43112188:43112344:43114355:43114436:43126554:43126706,	43114356	43114436	43114416	43114416	Frame_Shift_Del	C	-	p.Q908fs
STAD	TCGA-CG-5733-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256550	9256551	Frame_Shift_Ins	-	A	p.H1095fs
STAD	TCGA-CG-5733-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120796630:120796821:120797749:120797951:120801505:120801697,	120797750	120797951	120797783	120797784	Frame_Shift_Del	TC	-	p.1232_1232del
STAD	TCGA-CG-5733-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.M2803fs
STAD	TCGA-FP-7829-01	CC2D1A	ENST00000587508.1,ENST00000589138.1,ENST00000589606.1,ENST00000586955.1,ENST00000589224.1,ENST00000318003.7	chr19	14034507:14034624:14037329:14037403:14037479:14037538,	14037330	14037403	14037367	14037368	Frame_Shift_Ins	-	TCATC	p.F660fs
STAD	TCGA-FP-7829-01	ANKRD30A	ENST00000374660.1,ENST00000602533.1,ENST00000361713.1	chr10	37505108:37505322:37506622:37506806:37507907:37508825,	37506623	37506806	37506754	37506754	Frame_Shift_Del	C	-	p.A1016fs
STAD	TCGA-BR-7901-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135153	144135153	Frame_Shift_Del	A	-	p.E675fs
STAD	TCGA-BR-8078-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255185	9255186	Frame_Shift_Ins	-	A	p.L640fs
STAD	TCGA-BR-8078-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152322592	152322592	Frame_Shift_Del	A	-	p.L2186fs
STAD	TCGA-BR-8078-01	MAGI1	ENST00000483466.1,ENST00000472257.1,ENST00000463103.2	chr3	65350527:65350621:65361419:65361623:65364935:65365229,	65361420	65361623	65361570	65361571	Frame_Shift_Ins	-	C	p.S1045fs
STAD	TCGA-BR-8078-01	MAGI1	ENST00000402939.2,ENST00000460329.2,ENST00000330909.8	chr3	65350527:65350621:65361419:65361620:65364935:65365229,	65361420	65361620	65361570	65361571	Frame_Shift_Ins	-	C	p.S1045fs
STAD	TCGA-BR-8078-01	CASP4	ENST00000529183.1	chr11	104820387:104820504:104825473:104825728:104839245:104839274,	104825474	104825728	104825608	104825608	Frame_Shift_Del	T	-	p.K43fs
STAD	TCGA-BR-8078-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514338	75514338	Frame_Shift_Del	T	-	p.N674fs
STAD	TCGA-BR-8078-01	FERMT1	ENST00000217289.4	chr20	6088178:6088281:6090944:6091158:6093123:6093270,	6090945	6091158	6091015	6091015	Frame_Shift_Del	G	-	p.Q226fs
STAD	TCGA-BR-8078-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10626003:10626117:10626618:10626732:10627586:10627751,	10626619	10626732	10626634	10626634	Frame_Shift_Del	C	-	p.A662fs
STAD	TCGA-BR-8078-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40697749:40697936:40699586:40699768:40702268:40702498,	40699587	40699768	40699672	40699673	Frame_Shift_Ins	-	G	p.M1288fs
STAD	TCGA-BR-8078-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736154	4736154	Frame_Shift_Del	G	-	p.R639fs
STAD	TCGA-BR-8078-01	PLA2G4C	ENST00000599300.1	chr19	48581027:48581081:48588315:48588369:48591942:48591969,48581027:48581081:48588315:48588369:48593620:48593666,	48588316	48588369	48588317	48588317	Frame_Shift_Del	A	-	p.A292fs
STAD	TCGA-BR-8078-01	HERPUD1	ENST00000344114.4,ENST00000300302.5	chr16	56969153:56969224:56969315:56969387:56970598:56970729,	56969316	56969387	56969317	56969317	Frame_Shift_Del	A	-	p.E77fs
STAD	TCGA-BR-8078-01	HERPUD1	ENST00000570273.1,ENST00000439977.2,ENST00000565966.1,ENST00000569569.1,ENST00000563343.1	chr16	56969153:56969224:56969312:56969387:56970598:56970729,	56969313	56969387	56969317	56969317	Frame_Shift_Del	A	-	p.E77fs
STAD	TCGA-BR-8078-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654711	167654711	Frame_Shift_Del	C	-	p.F54fs
STAD	TCGA-BR-8078-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548597	212548597	Frame_Shift_Del	T	-	p.S338fs
STAD	TCGA-BR-8078-01	ATXN2	ENST00000389153.4,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000392645.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111951277:111951343:111953957:111954167:111956052:111956231,	111953958	111954167	111954046	111954046	Frame_Shift_Del	G	-	p.S590fs
STAD	TCGA-BR-8078-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120889	46120890	Frame_Shift_Ins	-	A	p.N55_N56delinsX
STAD	TCGA-BR-8078-01	ACTL6A	ENST00000450518.2,ENST00000468767.2,ENST00000429709.2,ENST00000494843.1,ENST00000392662.1,ENST00000487978.1	chr3	179287611:179287688:179287854:179288029:179291156:179291257,	179287855	179288029	179288016	179288016	Frame_Shift_Del	A	-	p.L88fs
STAD	TCGA-BR-8078-01	ACOX3	ENST00000503233.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8407681:8407770:8411938:8412082:8416018:8416108,	8411939	8412082	8412062	8412063	Frame_Shift_Ins	-	G	p.P188fs
STAD	TCGA-BR-8078-01	CALCOCO2	ENST00000258947.3,ENST00000508679.1,ENST00000448105.2,ENST00000506971.1,ENST00000509507.1,ENST00000416445.2	chr17	46930322:46930374:46933453:46933549:46937675:46937722,	46933454	46933549	46933463	46933464	Frame_Shift_Del	TT	-	p.331_332del
STAD	TCGA-BR-8078-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36640587	36640587	Frame_Shift_Del	T	-	p.H545fs
STAD	TCGA-BR-8078-01	TATDN1	ENST00000523214.1,ENST00000522280.1,ENST00000522810.1,ENST00000605953.1,ENST00000276692.6	chr8	125531058:125531122:125535177:125535243:125551265:125551297,125534391:125534441:125535177:125535243:125550571:125550710,125534391:125534441:125535177:125535243:125551168:125551278,125534391:125534441:125535177:125535243:125551265:125551297,	125535178	125535243	125535186	125535186	Frame_Shift_Del	T	-	p.K27fs
STAD	TCGA-BR-8078-01	ACAD10	ENST00000455480.2,ENST00000549590.1,ENST00000413681.3,ENST00000509936.1,ENST00000313698.4,ENST00000507135.1,ENST00000392636.2	chr12	112130500:112130700:112139965:112140114:112143541:112143736,	112139966	112140114	112140077	112140078	Frame_Shift_Ins	-	T	p.G100fs
STAD	TCGA-BR-8078-01	AJAP1	ENST00000378190.3,ENST00000378191.4	chr1	4771959:4772759:4829912:4830000:4832339:4832585,	4829913	4830000	4829992	4829992	Frame_Shift_Del	A	-	p.L303X
STAD	TCGA-BR-8078-01	ASAP1	ENST00000520342.1,ENST00000521075.1,ENST00000357668.1,ENST00000520927.1,ENST00000519169.1,ENST00000518721.1,ENST00000524367.1	chr8	131200354:131200429:131226801:131226947:131249167:131249240,	131226802	131226947	131226887	131226887	Frame_Shift_Del	A	-	p.L107fs
STAD	TCGA-BR-8078-01	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745735	39745735	Frame_Shift_Del	T	-	p.N506fs
STAD	TCGA-BR-8078-01	ACOT8	ENST00000487205.1	chr20	44470403:44470595:44472901:44473059:44477088:44477314,	44472902	44473059	44472965	44472965	Frame_Shift_Del	G	-	p.L195fs
STAD	TCGA-BR-8078-01	TBL1XR1	ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1	chr3	176768345:176768398:176769291:176769514:176771560:176771706,	176769292	176769514	176769342	176769342	Frame_Shift_Del	T	-	p.N126fs
STAD	TCGA-BR-8078-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299560	107299560	Frame_Shift_Del	T	-	p.E467fs
STAD	TCGA-BR-8078-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107592453:107592668:107593974:107594199:107595911:107596075,	107593975	107594199	107594140	107594141	Frame_Shift_Ins	-	C	p.S972fs
STAD	TCGA-BR-8078-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671704	77671705	Frame_Shift_Ins	-	T	p.K3195fs
STAD	TCGA-BR-8078-01	SLC16A10	ENST00000368851.5	chr6	111493897:111494042:111498414:111498868:111527794:111527938,	111498415	111498868	111498763	111498763	Frame_Shift_Del	A	-	p.P279fs
STAD	TCGA-BR-8078-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068108	88068108	Frame_Shift_Del	A	-	p.K106fs
STAD	TCGA-BR-8078-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107956439	107956439	Frame_Shift_Del	G	-	p.A797fs
STAD	TCGA-BR-8078-01	GOLT1B	ENST00000539663.1,ENST00000539025.1	chr12	21660050:21660085:21661316:21661495:21665228:21665310,21659818:21659910:21661316:21661495:21665228:21665310,21654786:21654882:21661316:21661495:21665228:21665310,21660877:21661043:21661316:21661495:21665228:21665310,	21661317	21661495	21661406	21661406	Frame_Shift_Del	T	-	p.G69fs
STAD	TCGA-BR-8078-01	PTPN4	ENST00000433888.1	chr2	120672754:120672818:120677644:120677817:120684173:120684242,120672754:120672818:120677644:120677817:120689999:120690125,	120677645	120677817	120677766	120677766	Frame_Shift_Del	A	-	p.Q317fs
STAD	TCGA-BR-8078-01	CREB5	ENST00000409603.1,ENST00000396298.2,ENST00000396299.2,ENST00000396300.2,ENST00000357727.2	chr7	28843815:28844139:28848803:28849031:28857687:28857796,	28848804	28849031	28848864	28848864	Frame_Shift_Del	G	-	p.T362fs
STAD	TCGA-BR-8078-01	DUT	ENST00000558367.1,ENST00000331200.3,ENST00000559852.1,ENST00000558472.1,ENST00000558813.1,ENST00000455976.2,ENST00000559416.1	chr15	48633485:48633560:48633711:48633782:48634218:48634230,	48633712	48633782	48633714	48633714	Frame_Shift_Del	A	-	p.V211fs
STAD	TCGA-BR-8078-01	OAS1	ENST00000549820.1	chr12	113344856:113345024:113346340:113346629:113348855:113349040,113344856:113345024:113346340:113346629:113348902:113349040,	113346341	113346629	113346491	113346492	Frame_Shift_Del	AG	-	p.110_111del
STAD	TCGA-BR-8078-01	CYP2F1	ENST00000331105.2,ENST00000532164.2	chr19	41630759:41630811:41631397:41631539:41633805:41634159,	41631398	41631539	41631481	41631481	Frame_Shift_Del	T	-	p.H412fs
STAD	TCGA-BR-8078-01	NCOA6	ENST00000374796.2,ENST00000359003.2	chr20	33345476:33345907:33346607:33346736:33356266:33356389,	33346608	33346736	33346694	33346694	Frame_Shift_Del	G	-	p.P186fs
STAD	TCGA-BR-8078-01	SH3BP4	ENST00000392011.2,ENST00000344528.4,ENST00000409212.1	chr2	235943598:235943764:235949531:235951891:235961205:235961394,	235949532	235951891	235949994	235949994	Frame_Shift_Del	T	-	p.L194fs
STAD	TCGA-BR-8078-01	PIAS2	ENST00000590127.1,ENST00000324794.7	chr18	44435527:44435578:44470542:44471017:44497284:44497308,44444126:44444211:44470542:44471017:44497284:44497308,	44470543	44471017	44470593	44470593	Frame_Shift_Del	T	-	p.N150fs
STAD	TCGA-BR-8078-01	NOS3	ENST00000297494.3,ENST00000461406.1,ENST00000475017.1	chr7	150706485:150706673:150707202:150707375:150707684:150707895,	150707203	150707375	150707211	150707211	Frame_Shift_Del	C	-	p.P840fs
STAD	TCGA-BR-8078-01	PIBF1	ENST00000326291.6	chr13	73409380:73409506:73428194:73428293:73467921:73468009,	73428195	73428293	73428254	73428254	Frame_Shift_Del	A	-	p.E428fs
STAD	TCGA-BR-8078-01	EED	ENST00000263360.6,ENST00000327320.4,ENST00000525244.1,ENST00000533228.1,ENST00000351625.6	chr11	85975213:85975305:85977124:85977258:85979497:85979572,	85977125	85977258	85977144	85977144	Frame_Shift_Del	A	-	p.E249fs
STAD	TCGA-BR-8078-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-BR-8078-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-BR-8078-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-BR-8078-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-BR-8078-01	TBX18	ENST00000606325.1,ENST00000606521.1,ENST00000606784.1,ENST00000369663.5	chr6	85457637:85457805:85466415:85466587:85469972:85470074,	85466416	85466587	85466490	85466490	Frame_Shift_Del	C	-	p.E233fs
STAD	TCGA-BR-8078-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645339	Frame_Shift_Del	A	-	p.A201fs
STAD	TCGA-BR-8078-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108338	102108338	Frame_Shift_Del	T	-	p.W159fs
STAD	TCGA-BR-8078-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693723	Frame_Shift_Del	TT	-	p.690_690del
STAD	TCGA-BR-8078-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176135	63176136	Frame_Shift_Ins	-	A	p.I753fs
STAD	TCGA-BR-8078-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927806	57927806	Frame_Shift_Del	G	-	p.P202fs
STAD	TCGA-BR-8078-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2	chr12	112306556:112306665:112308074:112308164:112308888:112308937,	112308075	112308164	112308145	112308145	Frame_Shift_Del	T	-	p.L155fs
STAD	TCGA-BR-8078-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226331	21226332	Frame_Shift_Ins	-	T	p.V570fs
STAD	TCGA-BR-8078-01	OCIAD2	ENST00000508632.1,ENST00000508069.2	chr4	48887421:48887582:48894788:48894906:48896022:48896070,	48894789	48894906	48894833	48894833	Frame_Shift_Del	A	-	p.E114fs
STAD	TCGA-BR-8078-01	OCIAD2	ENST00000514576.1	chr4	48887421:48887582:48894788:48896070:48899820:48899852,	48894789	48896070	48894833	48894833	Frame_Shift_Del	A	-	p.E114fs
STAD	TCGA-BR-8078-01	IQCD	ENST00000546692.1	chr12	113638567:113638618:113645242:113646314:113658801:113658832,	113645243	113646314	113645381	113645381	Frame_Shift_Del	T	-	p.L198fs
STAD	TCGA-BR-8078-01	IQCD	ENST00000416617.2	chr12	113638567:113638618:113645242:113646064:113658801:113658832,	113645243	113646064	113645381	113645381	Frame_Shift_Del	T	-	p.L198fs
STAD	TCGA-BR-8078-01	H2AFY	ENST00000511494.1,ENST00000423969.2,ENST00000511689.1,ENST00000510038.1,ENST00000512507.1,ENST00000304332.4,ENST00000360597.4,ENST00000506671.1,ENST00000312469.4,ENST00000451949.2	chr5	134670790:134670831:134678949:134679124:134681657:134681747,	134678950	134679124	134679016	134679016	Frame_Shift_Del	T	-	p.N296fs
STAD	TCGA-BR-8078-01	NOSTRIN	ENST00000397206.2,ENST00000444448.2,ENST00000458381.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2,ENST00000472260.1	chr2	169716021:169716147:169717304:169717419:169718469:169718559,	169717305	169717419	169717340	169717340	Frame_Shift_Del	T	-	p.P462fs
STAD	TCGA-BR-8078-01	MYO5C	ENST00000559696.1,ENST00000261839.7	chr15	52500750:52500840:52503926:52504081:52505384:52505483,	52503927	52504081	52504010	52504011	Frame_Shift_Ins	-	CA	p.R1405fs
STAD	TCGA-BR-8078-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024475	Frame_Shift_Del	AA	-	p.698_698del
STAD	TCGA-BR-8078-01	LMNA	ENST00000498722.2,ENST00000496738.1,ENST00000368299.3,ENST00000508500.1,ENST00000361308.4,ENST00000368297.1,ENST00000448611.2,ENST00000347559.2,ENST00000368301.2,ENST00000392353.3,ENST00000368300.4,ENST00000473598.2	chr1	156105877:156105912:156106004:156106227:156106711:156106819,	156106005	156106227	156106015	156106016	Frame_Shift_Ins	-	C	p.S390fs
STAD	TCGA-BR-8078-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830902	72830903	Frame_Shift_Ins	-	CT	p.R1893fs
STAD	TCGA-BR-8078-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134232956	134232957	Frame_Shift_Ins	-	C	p.R161fs
STAD	TCGA-BR-8078-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101268	27101268	Frame_Shift_Del	C	-	p.A1517fs
STAD	TCGA-BR-8078-01	DBR1	ENST00000463982.2,ENST00000505015.2	chr3	137890474:137890555:137892343:137892468:137893440:137893514,	137892344	137892468	137892418	137892418	Frame_Shift_Del	C	-	p.G83fs
STAD	TCGA-BR-8078-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448297	56448298	Frame_Shift_Ins	-	G	p.R117fs
STAD	TCGA-BR-8078-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551602	165551602	Frame_Shift_Del	T	-	p.K805fs
STAD	TCGA-BR-8078-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551602	165551602	Frame_Shift_Del	T	-	p.K805fs
STAD	TCGA-BR-8078-01	HDAC7	ENST00000463732.1,ENST00000470668.1,ENST00000380610.4,ENST00000485796.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48188651:48188716:48188966:48189163:48189369:48189393,	48188967	48189163	48189044	48189045	Frame_Shift_Ins	-	G	p.S403fs
STAD	TCGA-BR-8078-01	STAB1	ENST00000321725.6	chr3	52545665:52545761:52546356:52546452:52546611:52546659,	52546357	52546452	52546401	52546401	Frame_Shift_Del	C	-	p.C976fs
STAD	TCGA-BR-8078-01	MFSD12	ENST00000398558.4	chr19	3538647:3538754:3542773:3542975:3544806:3544937,	3542774	3542975	3542859	3542859	Frame_Shift_Del	G	-	p.L513fs
STAD	TCGA-BR-8078-01	APBB1	ENST00000608704.1	chr11	6424717:6424774:6424876:6425052:6426616:6426671,	6424877	6425052	6424925	6424925	Frame_Shift_Del	G	-	p.G284fs
STAD	TCGA-BR-8078-01	ZNF148	ENST00000492394.1,ENST00000360647.4	chr3	125006946:125007072:125032151:125032500:125042152:125042288,	125032152	125032500	125032219	125032219	Frame_Shift_Del	T	-	p.N89fs
STAD	TCGA-BR-8078-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212518	185212518	Frame_Shift_Del	A	-	p.F156fs
STAD	TCGA-BR-8078-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181822	154181822	Frame_Shift_Del	G	-	p.P580fs
STAD	TCGA-BR-8078-01	PNLDC1	ENST00000392167.3,ENST00000275275.5,ENST00000610273.1	chr6	160229771:160229848:160230046:160230190:160231057:160231127,	160230047	160230190	160230161	160230161	Frame_Shift_Del	T	-	p.V240fs
STAD	TCGA-BR-8078-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36766828:36767053:36768447:36768637:36776340:36776415,	36768448	36768637	36768517	36768518	Frame_Shift_Ins	-	C	p.S801fs
STAD	TCGA-BR-8078-01	GORASP1	ENST00000422110.2	chr3	39140925:39140994:39141795:39141945:39142506:39142593,	39141796	39141945	39141846	39141847	Frame_Shift_Ins	-	G	p.E239fs
STAD	TCGA-BR-8078-01	GORASP1	ENST00000441302.2	chr3	39140925:39140994:39141795:39142368:39142506:39142593,	39141796	39142368	39141846	39141847	Frame_Shift_Ins	-	G	p.E239fs
STAD	TCGA-BR-8078-01	PARP4	ENST00000381989.3	chr13	25029154:25029350:25030478:25030616:25033181:25033260,	25030479	25030616	25030500	25030500	Frame_Shift_Del	T	-	p.H848fs
STAD	TCGA-BR-8078-01	ARIH2	ENST00000484999.1	chr3	48960197:48960244:48964894:48965246:48999044:48999071,48962150:48962272:48964894:48965246:48982568:48982614,48962150:48962272:48964894:48965246:48999044:48999071,48960197:48960244:48964894:48965246:48982568:48982614,	48964895	48965246	48965138	48965138	Frame_Shift_Del	G	-	p.Q49fs
STAD	TCGA-BR-8078-01	TINF2	ENST00000540705.1	chr14	24710409:24710517:24710880:24710982:24711095:24711127,24710409:24710517:24710880:24710982:24711346:24711494,	24710881	24710982	24710896	24710897	Frame_Shift_Ins	-	A	p.L128fs
STAD	TCGA-HU-A4G2-01	MUC6	ENST00000421673.2	chr11	1018035:1018770:1019274:1019496:1020089:1020257,	1019275	1019496	1019329	1019329	Frame_Shift_Del	G	-	p.R1326fs
STAD	TCGA-HF-7136-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292809	98292810	Frame_Shift_Ins	-	T	p.W442fs
STAD	TCGA-HF-7136-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971024	21971024	Frame_Shift_Del	G	-	p.P126fs
STAD	TCGA-HF-7136-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971024	21971024	Frame_Shift_Del	G	-	p.P126fs
STAD	TCGA-HF-7136-01	WBP4	ENST00000379487.3	chr13	41636779:41636852:41639151:41639214:41639299:41639423,	41639152	41639214	41639174	41639177	Frame_Shift_Del	GAAA	-	p.33_34del
STAD	TCGA-HF-7136-01	ADCY2	ENST00000537121.1,ENST00000338316.4	chr5	7724657:7724727:7727276:7727374:7743780:7743865,	7727277	7727374	7727327	7727328	Frame_Shift_Del	TC	-	p.608_608del
STAD	TCGA-CD-5804-01	FAM129C	ENST00000352727.3,ENST00000595684.1,ENST00000300971.2,ENST00000600519.1,ENST00000601861.1,ENST00000335393.4,ENST00000599164.1,ENST00000600871.1,ENST00000332386.5,ENST00000599124.1,ENST00000449408.2	chr19	17643071:17643197:17644395:17644510:17648184:17648314,	17644396	17644510	17644504	17644517	Frame_Shift_Del	TCCTTGGGTAAGGG	-	p.171_174del
STAD	TCGA-CD-5804-01	FAM129C	ENST00000597887.1	chr19	17643071:17643197:17644333:17644510:17648184:17648314,	17644334	17644510	17644504	17644517	Frame_Shift_Del	TCCTTGGGTAAGGG	-	p.171_174del
STAD	TCGA-CD-5804-01	USP36	ENST00000312010.6,ENST00000449938.2,ENST00000542802.3,ENST00000589225.1	chr17	76794989:76795105:76795748:76795850:76798405:76798617,	76795749	76795850	76795809	76795809	Frame_Shift_Del	C	-	p.E1022fs
STAD	TCGA-HU-A4GN-01	SREBF2	ENST00000361204.4,ENST00000424354.1	chr22	42280845:42281015:42289120:42289289:42290823:42290941,	42289121	42289289	42289201	42289201	Frame_Shift_Del	C	-	p.H763fs
STAD	TCGA-HU-A4GN-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000553360.1,ENST00000395314.3,ENST00000459737.1,ENST00000555164.1,ENST00000395308.1,ENST00000395311.1	chr14	56119567:56119658:56119734:56119803:56120276:56120314,	56119735	56119803	56119760	56119761	Frame_Shift_Ins	-	A	p.L907fs
STAD	TCGA-HU-A4GN-01	PLG	ENST00000308192.9	chr6	161137676:161137795:161139325:161139488:161139724:161139870,	161139326	161139488	161139450	161139451	Frame_Shift_Ins	-	CA	p.P304fs
STAD	TCGA-HU-A4GN-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800273	28800273	Frame_Shift_Del	C	-	p.S354fs
STAD	TCGA-HU-A4GN-01	TESK1	ENST00000336395.5	chr9	35606233:35606282:35606833:35606980:35607578:35607669,35606233:35606282:35606833:35606980:35607323:35607406,	35606834	35606980	35606843	35606843	Frame_Shift_Del	G	-	p.N133fs
STAD	TCGA-HU-A4GN-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730308	1730308	Frame_Shift_Del	C	-	p.D393fs
STAD	TCGA-HU-A4GN-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349838	89349838	Frame_Shift_Del	T	-	p.S1038fs
STAD	TCGA-HU-A4GN-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
STAD	TCGA-HU-A4GN-01	ACP1	ENST00000484464.1,ENST00000453390.1,ENST00000442386.1,ENST00000272065.5,ENST00000463831.1,ENST00000272067.6	chr2	272036:272150:276979:277085:277226:277261,275139:275201:276979:277085:277226:277261,	276980	277085	277054	277054	Frame_Shift_Del	A	-	p.Q123fs
STAD	TCGA-HU-A4GN-01	PRMT3	ENST00000529592.1,ENST00000330796.5,ENST00000437750.2,ENST00000331079.6	chr11	20515464:20515515:20515712:20515800:20529849:20530254,	20515713	20515800	20515777	20515777	Frame_Shift_Del	A	-	p.E488fs
STAD	TCGA-HU-A4GN-01	EIF3M	ENST00000525782.1,ENST00000524896.1	chr11	32608591:32608690:32611092:32611187:32615411:32615495,32610139:32610278:32611092:32611187:32615411:32615495,32605429:32605475:32611092:32611187:32615411:32615495,	32611093	32611187	32611130	32611130	Frame_Shift_Del	A	-	p.E159fs
STAD	TCGA-HU-A4GN-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543930	Frame_Shift_Del	G	-	p.S797fs
STAD	TCGA-HU-A4GN-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000342933.3,ENST00000400111.3,ENST00000544123.1,ENST00000545076.1,ENST00000542652.2	chr18	5428311:5428464:5433467:5433555:5433901:5434120,	5433468	5433555	5433504	5433504	Frame_Shift_Del	T	-	p.L293fs
STAD	TCGA-HU-A4GN-01	BCL7A	ENST00000538010.1	chr12	122481791:122481959:122492710:122492895:122496997:122498811,	122492711	122492895	122492892	122492892	Frame_Shift_Del	G	-	p.S207fs
STAD	TCGA-HU-A4GN-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3,ENST00000411772.1	chr15	43730521:43730614:43733723:43733781:43738584:43738788,	43733724	43733781	43733757	43733757	Frame_Shift_Del	T	-	p.N1022fs
STAD	TCGA-HU-A4GN-01	PUS7L	ENST00000344862.5,ENST00000553166.1	chr12	44142252:44142412:44148138:44149064:44152503:44152562,44142252:44142412:44148138:44149064:44152532:44152562,	44148139	44149064	44148392	44148392	Frame_Shift_Del	A	-	p.K220fs
STAD	TCGA-HU-A4GN-01	DST	ENST00000370765.6	chr6	56482038:56482216:56482783:56485513:56489327:56489426,	56482784	56485513	56485020	56485020	Frame_Shift_Del	T	-	p.N1271fs
STAD	TCGA-HU-A4GN-01	MED15	ENST00000542773.1	chr22	20938645:20938712:20939141:20939554:20940014:20940113,	20939142	20939554	20939157	20939157	Frame_Shift_Del	C	-	p.P606fs
STAD	TCGA-HU-A4GN-01	MED15	ENST00000492381.1,ENST00000433831.1,ENST00000406969.1,ENST00000489651.1,ENST00000541476.1,ENST00000263205.7,ENST00000382974.2,ENST00000473244.1,ENST00000292733.7,ENST00000425759.2	chr22	20938645:20938712:20939141:20939302:20939387:20939554,	20939142	20939302	20939157	20939157	Frame_Shift_Del	C	-	p.P606fs
STAD	TCGA-HU-A4GN-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088659	27088659	Frame_Shift_Del	C	-	p.N756fs
STAD	TCGA-HU-A4GN-01	UGT3A2	ENST00000513300.1,ENST00000282507.3	chr5	36039761:36039810:36048990:36049522:36051971:36052086,	36048991	36049522	36049012	36049012	Frame_Shift_Del	T	-	p.P275fs
STAD	TCGA-HU-A4GN-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729489	19729489	Frame_Shift_Del	A	-	p.S267fs
STAD	TCGA-HU-A4GN-01	TAOK3	ENST00000537305.1,ENST00000419821.2,ENST00000392533.3	chr12	118636855:118637062:118639100:118639268:118650718:118650800,	118639101	118639268	118639156	118639157	Frame_Shift_Ins	-	T	p.I311fs
STAD	TCGA-HU-A4GN-01	SAFB2	ENST00000252542.4	chr19	5593901:5594189:5595371:5595508:5598803:5598895,	5595372	5595508	5595419	5595420	Frame_Shift_Del	CT	-	p.624_625del
STAD	TCGA-HU-A4GN-01	FARSA	ENST00000586280.1,ENST00000588965.1,ENST00000314606.4,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13039568:13039661:13041036:13041155:13041242:13041341,	13041037	13041155	13041102	13041103	Frame_Shift_Ins	-	C	p.G146fs
STAD	TCGA-HU-A4GN-01	PTPRH	ENST00000376350.3,ENST00000588559.1,ENST00000586852.1	chr19	55715359:55715416:55716693:55716960:55718056:55718323,	55716694	55716960	55716887	55716887	Frame_Shift_Del	G	-	p.D143fs
STAD	TCGA-HU-A4GN-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66188492:66188739:66190864:66191041:66199948:66200099,	66190865	66191041	66190982	66190983	Frame_Shift_Ins	-	A	p.D400fs
STAD	TCGA-HU-A4GN-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573659	121573659	Frame_Shift_Del	A	-	p.V109fs
STAD	TCGA-HU-A4GN-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-HU-A4GN-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-HU-A4GN-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-HU-A4GN-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.M84X
STAD	TCGA-HU-A4GN-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H202fs
STAD	TCGA-HU-A4GN-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H202fs
STAD	TCGA-HU-A4GN-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125029867:125029958:125033789:125033909:125035683:125035836,	125033790	125033909	125033884	125033884	Frame_Shift_Del	A	-	p.E703fs
STAD	TCGA-HU-A4GN-01	L3MBTL1	ENST00000427442.2,ENST00000422861.1,ENST00000418998.1,ENST00000444063.1,ENST00000373133.1,ENST00000445228.1,ENST00000497347.1,ENST00000373134.1,ENST00000373135.3	chr20	42162647:42162733:42162923:42163034:42163467:42163582,	42162924	42163034	42162927	42162927	Frame_Shift_Del	C	-	p.R512fs
STAD	TCGA-HU-A4GN-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267481	1267481	Frame_Shift_Del	C	-	p.T3124fs
STAD	TCGA-HU-A4GN-01	SLC2A5	ENST00000486632.1,ENST00000484798.1,ENST00000487835.1,ENST00000377424.4,ENST00000377414.3,ENST00000474145.1,ENST00000479813.1	chr1	9101916:9101996:9107668:9107793:9117506:9117667,	9107669	9107793	9107765	9107766	Frame_Shift_Del	AT	-	p.108_108del
STAD	TCGA-HU-A4GN-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1271252	1271252	Frame_Shift_Del	C	-	p.T4381fs
STAD	TCGA-HU-A4GN-01	ARHGEF3	ENST00000495373.1,ENST00000498517.1,ENST00000473779.1,ENST00000413728.2,ENST00000338458.4,ENST00000465659.1,ENST00000468727.1,ENST00000481422.1,ENST00000496106.1,ENST00000296315.3,ENST00000497267.1	chr3	56787531:56787594:56789008:56789179:56807736:56807844,	56789009	56789179	56789105	56789105	Frame_Shift_Del	G	-	p.S126fs
STAD	TCGA-HU-A4GN-01	PAPSS1	ENST00000511304.1,ENST00000265174.4	chr4	108575850:108576056:108578051:108578163:108581114:108581228,	108578052	108578163	108578093	108578094	Frame_Shift_Del	CT	-	p.285_285del
STAD	TCGA-HU-A4GN-01	BAIAP2L1	ENST00000005260.8	chr7	97937000:97937208:97939756:97939904:97941408:97941576,	97939757	97939904	97939854	97939854	Frame_Shift_Del	G	-	p.A287fs
STAD	TCGA-HU-A4GN-01	GTF2E1	ENST00000283875.5	chr3	120469369:120469847:120489574:120489776:120495269:120495507,	120489575	120489776	120489634	120489634	Frame_Shift_Del	A	-	p.P169fs
STAD	TCGA-BR-A4CQ-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542799	114542799	Frame_Shift_Del	T	-	p.N123fs
STAD	TCGA-BR-A4CQ-01	LPCAT1	ENST00000475622.1,ENST00000283415.3	chr5	1466863:1467005:1470940:1471039:1474071:1474225,	1470941	1471039	1471036	1471052	Frame_Shift_Del	CGCTCTGTGGGGAGAGA	-	p.394_395del
STAD	TCGA-BR-A4QM-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492797	56492798	Frame_Shift_Ins	-	A	p.I48fs
STAD	TCGA-HU-8245-01	MMP10	ENST00000539681.1	chr11	102649943:102650092:102650234:102650476:102651217:102651359,	102650235	102650476	102650395	102650395	Frame_Shift_Del	T	-	p.I63fs
STAD	TCGA-HU-8245-01	RBM6	ENST00000422955.1,ENST00000425608.1,ENST00000434592.1	chr3	50009491:50009581:50012755:50012825:50085677:50085752,	50012756	50012825	50012778	50012779	Frame_Shift_Del	CT	-	p.479_479del
STAD	TCGA-B7-A5TI-01	NCDN	ENST00000373253.3,ENST00000356090.4,ENST00000373243.2	chr1	36025926:36026895:36027992:36028234:36028802:36029027,	36027993	36028234	36028192	36028192	Frame_Shift_Del	C	-	p.S448fs
STAD	TCGA-B7-A5TI-01	SGIP1	ENST00000237247.6	chr1	67098752:67098777:67099762:67099846:67105459:67105516,	67099763	67099846	67099769	67099769	Frame_Shift_Del	A	-	p.K38fs
STAD	TCGA-B7-A5TI-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000481180.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93667448:93667545:93671066:93671188:93672663:93672955,	93671067	93671188	93671100	93671103	Frame_Shift_Del	CTAA	-	p.LT277fs
STAD	TCGA-B7-A5TI-01	TRIM33	ENST00000358465.2,ENST00000369543.2	chr1	114951298:114951362:114952805:114952938:114964057:114964258,	114952806	114952938	114952868	114952868	Frame_Shift_Del	G	-	p.P711fs
STAD	TCGA-B7-A5TI-01	CCDC181	ENST00000367806.3	chr1	169364284:169364444:169366474:169366629:169388250:169388397,	169366475	169366629	169366580	169366580	Frame_Shift_Del	T	-	p.K421fs
STAD	TCGA-B7-A5TI-01	CCDC181	ENST00000545005.1,ENST00000367805.3	chr1	169364284:169364444:169366474:169366626:169388250:169388397,	169366475	169366626	169366580	169366580	Frame_Shift_Del	T	-	p.K421fs
STAD	TCGA-B7-A5TI-01	EPRS	ENST00000366923.3,ENST00000609181.1,ENST00000464052.1	chr1	220170517:220170684:220174479:220174597:220178589:220178702,	220174480	220174597	220174484	220174484	Frame_Shift_Del	T	-	p.N726fs
STAD	TCGA-B7-A5TI-01	SOS1	ENST00000426016.1,ENST00000402219.2	chr2	39214613:39214732:39222263:39222528:39224062:39224179,39216410:39216455:39222263:39222528:39224062:39224179,	39222264	39222528	39222520	39222520	Frame_Shift_Del	T	-	p.K1030fs
STAD	TCGA-B7-A5TI-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099432	168099432	Frame_Shift_Del	A	-	p.R510fs
STAD	TCGA-B7-A5TI-01	SSB	ENST00000474273.1,ENST00000260956.4,ENST00000409333.1	chr2	170663480:170663581:170664991:170665063:170665369:170665412,	170664992	170665063	170665008	170665008	Frame_Shift_Del	A	-	p.K192fs
STAD	TCGA-B7-A5TI-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420622	203420623	Frame_Shift_Ins	-	C	p.P745fs
STAD	TCGA-B7-A5TI-01	TRANK1	ENST00000429976.2,ENST00000301807.6	chr3	36893636:36893836:36896663:36899540:36900208:36900374,	36896664	36899540	36896820	36896820	Frame_Shift_Del	C	-	p.D871fs
STAD	TCGA-B7-A5TI-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000513291.1	chr3	142178068:142178225:142180781:142180932:142183938:142184082,	142180782	142180932	142180784	142180784	Frame_Shift_Del	T	-	p.K2397fs
STAD	TCGA-B7-A5TI-01	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185234854:185234950:185236929:185237097:185241858:185241948,	185236930	185237097	185237031	185237032	Frame_Shift_Del	CT	-	p.S262fs
STAD	TCGA-B7-A5TI-01	CENPK	ENST00000515497.1,ENST00000502997.1,ENST00000242872.3,ENST00000396679.1,ENST00000514814.1,ENST00000508421.1,ENST00000510693.1,ENST00000510768.1	chr5	64838628:64838675:64847390:64847463:64848319:64848376,	64847391	64847463	64847400	64847400	Frame_Shift_Del	T	-	p.T78fs
STAD	TCGA-B7-A5TI-01	ARHGEF28	ENST00000296799.4	chr5	73091155:73091216:73128162:73128284:73136304:73136585,73109342:73109498:73128162:73128284:73136304:73136585,	73128163	73128284	73128182	73128182	Frame_Shift_Del	A	-	p.L348fs
STAD	TCGA-B7-A5TI-01	SSBP2	ENST00000507655.1,ENST00000505980.1,ENST00000506960.1,ENST00000504174.1,ENST00000509053.1,ENST00000320672.4,ENST00000512098.1,ENST00000509013.2,ENST00000515395.1,ENST00000514493.1	chr5	80911304:80911376:80932375:80932437:80946085:80946158,	80932376	80932437	80932421	80932421	Frame_Shift_Del	T	-	p.N51fs
STAD	TCGA-B7-A5TI-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327822	16327823	Frame_Shift_Ins	-	G	p.P240fs
STAD	TCGA-B7-A5TI-01	DDR1	ENST00000376568.3,ENST00000376575.3,ENST00000452441.1,ENST00000513240.1,ENST00000324771.8	chr6	30862364:30862448:30864397:30864642:30864790:30864823,30863180:30863291:30864397:30864642:30864790:30864823,	30864398	30864642	30864571	30864571	Frame_Shift_Del	C	-	p.P601fs
STAD	TCGA-B7-A5TI-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30863180:30863291:30864507:30864642:30864790:30864823,	30864508	30864642	30864571	30864571	Frame_Shift_Del	C	-	p.P601fs
STAD	TCGA-B7-A5TI-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178990	33178990	Frame_Shift_Del	G	-	p.G172fs
STAD	TCGA-B7-A5TI-01	PM20D2	ENST00000275072.4	chr6	89862761:89862904:89864466:89864621:89868043:89868179,	89864467	89864621	89864474	89864474	Frame_Shift_Del	A	-	p.I255fs
STAD	TCGA-B7-A5TI-01	NOL6	ENST00000297990.4,ENST00000455041.2,ENST00000379471.2,ENST00000353159.2	chr9	33467391:33467514:33467688:33467866:33468027:33468143,	33467689	33467866	33467733	33467733	Frame_Shift_Del	C	-	p.A520fs
STAD	TCGA-B7-A5TI-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000605788.1,ENST00000461421.1,ENST00000476468.1,ENST00000488254.2,ENST00000464969.2	chr10	103918949:103919065:103919189:103919325:103919652:103919695,	103919190	103919325	103919299	103919299	Frame_Shift_Del	A	-	p.Q288fs
STAD	TCGA-B7-A5TI-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6413286	6413286	Frame_Shift_Del	C	-	p.P332fs
STAD	TCGA-B7-A5TI-01	KNTC1	ENST00000450485.2,ENST00000333479.7	chr12	123047184:123047246:123052807:123052919:123054227:123054371,	123052808	123052919	123052858	123052858	Frame_Shift_Del	T	-	p.I552fs
STAD	TCGA-B7-A5TI-01	MPHOSPH9	ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000606321.1,ENST00000302349.5	chr12	123648496:123648637:123649848:123650024:123651201:123651336,	123649849	123650024	123649959	123649959	Frame_Shift_Del	T	-	p.K886fs
STAD	TCGA-B7-A5TI-01	LGMN	ENST00000334869.4,ENST00000393218.2,ENST00000557725.1,ENST00000557609.1	chr14	93170620:93170706:93176016:93176217:93178003:93178093,93172827:93172998:93176016:93176217:93178003:93178093,	93176017	93176217	93176150	93176151	Frame_Shift_Ins	-	G	p.T296fs
STAD	TCGA-B7-A5TI-01	SPHK2	ENST00000601712.1	chr19	49123658:49123810:49129206:49129619:49130948:49131098,	49129207	49129619	49129311	49129311	Frame_Shift_Del	C	-	p.T130fs
STAD	TCGA-B7-A5TI-01	SPHK2	ENST00000598088.1,ENST00000245222.4,ENST00000340932.3	chr19	49123771:49123810:49129147:49129619:49130948:49131098,	49129148	49129619	49129311	49129311	Frame_Shift_Del	C	-	p.T130fs
STAD	TCGA-B7-A5TI-01	P2RX6	ENST00000443995.3,ENST00000432930.1,ENST00000442475.1,ENST00000401443.1,ENST00000422210.1,ENST00000336296.2,ENST00000413302.2,ENST00000402329.3	chr22	21377230:21377324:21377406:21377487:21377563:21377705,	21377407	21377487	21377450	21377450	Frame_Shift_Del	A	-	p.K201fs
STAD	TCGA-B7-A5TJ-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35881066:35881315:35884043:35884173:35885070:35887544,	35884044	35884173	35884071	35884075	Frame_Shift_Del	GAAAT	-	p.RN1446fs
STAD	TCGA-B7-A5TJ-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.P468fs
STAD	TCGA-B7-A5TJ-01	DLX1	ENST00000469444.2,ENST00000361725.4	chr2	172950338:172950718:172951381:172951581:172952730:172952779,	172951382	172951581	172951560	172951561	Frame_Shift_Del	TT	-	p.SL164fs
STAD	TCGA-B7-A5TJ-01	SULT1A1	ENST00000566189.1	chr16	28619798:28619924:28620028:28620211:28621251:28621311,	28620029	28620211	28620108	28620120	Frame_Shift_Del	GTACTTGATGAGC	-	p.PLIKY19fs
STAD	TCGA-B7-A5TJ-01	SULT1A1	ENST00000562058.1,ENST00000314752.7,ENST00000395609.1	chr16	28619798:28619924:28620028:28620180:28621251:28621311,	28620029	28620180	28620108	28620120	Frame_Shift_Del	GTACTTGATGAGC	-	p.PLIKY19fs
STAD	TCGA-B7-A5TN-01	CAMK4	ENST00000514007.1	chr5	110679721:110679800:110710547:110710610:110712557:110712640,110679721:110679800:110710547:110710610:110730407:110730447,	110710548	110710610	110710554	110710554	Frame_Shift_Del	A	-	p.K84fs
STAD	TCGA-D7-A6EV-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
STAD	TCGA-D7-A6EV-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
STAD	TCGA-D7-A6EY-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
STAD	TCGA-D7-A6EY-01	RERE	ENST00000480342.1,ENST00000337907.3,ENST00000400907.2,ENST00000400908.2	chr1	8617476:8617582:8674619:8674745:8684368:8684439,	8674620	8674745	8674690	8674690	Frame_Shift_Del	G	-	p.P151fs
STAD	TCGA-D7-A6EY-01	TNFRSF8	ENST00000263932.2,ENST00000413146.2	chr1	12195644:12195670:12198285:12198493:12202343:12204264,	12198286	12198493	12198423	12198424	Frame_Shift_Ins	-	G	p.AG491fs
STAD	TCGA-D7-A6EY-01	TNFRSF8	ENST00000514649.1,ENST00000417814.2	chr1	12195644:12195670:12198288:12198493:12202343:12204264,	12198289	12198493	12198423	12198424	Frame_Shift_Ins	-	G	p.AG491fs
STAD	TCGA-D7-A6EY-01	HMGN2	ENST00000464888.1,ENST00000361427.5,ENST00000466194.1,ENST00000463817.1	chr1	26800193:26800223:26800575:26800626:26801062:26801158,	26800576	26800626	26800609	26800609	Frame_Shift_Del	A	-	p.K43fs
STAD	TCGA-D7-A6EY-01	SCMH1	ENST00000326197.7,ENST00000372595.1,ENST00000402904.2,ENST00000361705.3,ENST00000397174.2,ENST00000397171.2,ENST00000361191.5,ENST00000372597.1,ENST00000372596.1,ENST00000337495.5	chr1	41536266:41536393:41540890:41541123:41608549:41608784,41536266:41536393:41540890:41541123:41578954:41579198,	41540891	41541123	41540951	41540952	Frame_Shift_Ins	-	G	p.L296fs
STAD	TCGA-D7-A6EY-01	SLC35A3	ENST00000370153.1,ENST00000533028.1,ENST00000427993.2,ENST00000370156.3,ENST00000465289.1,ENST00000370155.3,ENST00000422078.1	chr1	100464816:100464971:100472589:100472712:100476920:100477089,	100472590	100472712	100472647	100472647	Frame_Shift_Del	A	-	p.K135fs
STAD	TCGA-D7-A6EY-01	TP53BP2	ENST00000498843.1,ENST00000343537.7,ENST00000391878.2	chr1	223983875:223984292:223985916:223986379:223987600:223987749,	223985917	223986379	223985981	223985982	Frame_Shift_Ins	-	T	p.I499fs
STAD	TCGA-D7-A6EY-01	DISC1	ENST00000366633.3,ENST00000295051.7,ENST00000535944.1,ENST00000439617.2,ENST00000535983.1,ENST00000602281.1,ENST00000366636.4,ENST00000537876.1,ENST00000539444.1,ENST00000422590.2,ENST00000366637.3	chr1	231837700:231837770:231885671:231885822:231902885:231903015,	231885672	231885822	231885809	231885809	Frame_Shift_Del	G	-	p.G419fs
STAD	TCGA-D7-A6EY-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.P864fs
STAD	TCGA-D7-A6EY-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.G3454fs
STAD	TCGA-D7-A6EY-01	MFAP3L	ENST00000361618.3	chr4	170913315:170913460:170926730:170927161:170947384:170947446,	170926731	170927161	170926834	170926835	Frame_Shift_Ins	-	A	p.Y65fs
STAD	TCGA-D7-A6EY-01	FSTL4	ENST00000509525.1,ENST00000265342.7	chr5	132537624:132537734:132545882:132545990:132552920:132553070,	132545883	132545990	132545933	132545934	Frame_Shift_Ins	-	T	p.HV555fs
STAD	TCGA-D7-A6EY-01	SH3RF2	ENST00000359120.4,ENST00000511217.1	chr5	145427334:145427426:145428637:145428808:145435543:145435641,	145428638	145428808	145428715	145428716	Frame_Shift_Ins	-	G	p.R410fs
STAD	TCGA-D7-A6EY-01	TBC1D32	ENST00000275159.6,ENST00000422369.1,ENST00000398212.2	chr6	121631924:121631993:121638640:121638818:121642778:121642940,	121638641	121638818	121638708	121638709	Frame_Shift_Ins	-	T	p.P143fs
STAD	TCGA-D7-A6EY-01	TBC1D32	ENST00000464622.1	chr6	121631924:121631993:121638640:121638836:121642778:121642940,	121638641	121638836	121638708	121638709	Frame_Shift_Ins	-	T	p.P143fs
STAD	TCGA-D7-A6EY-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479331	100479332	Frame_Shift_Ins	-	G	p.AG101fs
STAD	TCGA-D7-A6EY-01	KMT2E	ENST00000334914.7,ENST00000257745.4,ENST00000334877.4,ENST00000311117.3	chr7	104746305:104746450:104746968:104747219:104747612:104747669,	104746969	104747219	104746985	104746985	Frame_Shift_Del	A	-	p.L871fs
STAD	TCGA-D7-A6EY-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561448	142561448	Frame_Shift_Del	G	-	p.G55fs
STAD	TCGA-D7-A6EY-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167474	Frame_Shift_Del	AA	-	p.K74fs
STAD	TCGA-D7-A6EY-01	NRG1	ENST00000338921.4,ENST00000287842.3,ENST00000405005.3,ENST00000356819.4,ENST00000521670.1,ENST00000287845.5,ENST00000341377.5,ENST00000523079.1	chr8	32406244:32406344:32453345:32453523:32463079:32463201,	32453346	32453523	32453511	32453511	Frame_Shift_Del	A	-	p.Q89fs
STAD	TCGA-D7-A6EY-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730524	37730525	Frame_Shift_Del	GA	-	p.S600fs
STAD	TCGA-D7-A6EY-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968044	5968044	Frame_Shift_Del	T	-	p.K729fs
STAD	TCGA-D7-A6EY-01	KDM4C	ENST00000428870.2,ENST00000442236.2,ENST00000381309.3,ENST00000381306.3	chr9	7049191:7049200:7103684:7103870:7128065:7128236,	7103685	7103870	7103861	7103861	Frame_Shift_Del	C	-	p.N867fs
STAD	TCGA-D7-A6EY-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.G1862fs
STAD	TCGA-D7-A6EY-01	R3HCC1L	ENST00000298999.3	chr10	99923049:99923154:99967857:99969656:99991268:99991444,	99967858	99969656	99968034	99968035	Frame_Shift_Del	TC	-	p.S55fs
STAD	TCGA-D7-A6EY-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115986880	115986880	Frame_Shift_Del	A	-	p.L1075fs
STAD	TCGA-D7-A6EY-01	ARFGAP2	ENST00000529455.1	chr11	47193862:47193884:47196732:47196864:47197401:47197474,	47196733	47196864	47196853	47196853	Frame_Shift_Del	A	-	p.F92fs
STAD	TCGA-D7-A6EY-01	SLC22A6	ENST00000377871.3,ENST00000360421.4,ENST00000421062.2,ENST00000537349.1,ENST00000458333.2,ENST00000540654.1	chr11	62748731:62748855:62749313:62749482:62751008:62751163,	62749314	62749482	62749334	62749334	Frame_Shift_Del	A	-	p.F259fs
STAD	TCGA-D7-A6EY-01	VEGFB	ENST00000309422.2	chr11	64003725:64003799:64004658:64004694:64004992:64005127,64003725:64003799:64004658:64004694:64004891:64005127,	64004659	64004694	64004663	64004663	Frame_Shift_Del	A	-	p.K129fs
STAD	TCGA-D7-A6EY-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1,ENST00000527339.1	chr11	65313912:65314035:65314268:65314391:65314909:65315036,	65314269	65314391	65314283	65314283	Frame_Shift_Del	C	-	p.G740fs
STAD	TCGA-D7-A6EY-01	NUMA1	ENST00000393695.3,ENST00000540843.1,ENST00000351960.6,ENST00000537905.1,ENST00000537217.1,ENST00000535087.1,ENST00000366394.3	chr11	71740250:71740336:71746947:71747021:71752004:71752132,71740250:71740336:71746947:71747021:71780887:71780957,	71746948	71747021	71746965	71746965	Frame_Shift_Del	C	-	p.A10fs
STAD	TCGA-D7-A6EY-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410381	19410381	Frame_Shift_Del	A	-	p.S149fs
STAD	TCGA-D7-A6EY-01	AMDHD1	ENST00000553023.1,ENST00000266736.2	chr12	96346494:96346601:96348688:96348753:96350462:96350474,	96348689	96348753	96348701	96348702	Frame_Shift_Del	CA	-	p.A86fs
STAD	TCGA-D7-A6EY-01	NOS1	ENST00000338101.4,ENST00000344089.3,ENST00000317775.6	chr12	117680431:117680510:117681101:117681240:117685152:117685327,	117681102	117681240	117681194	117681194	Frame_Shift_Del	T	-	p.K957fs
STAD	TCGA-D7-A6EY-01	SFSWAP	ENST00000535236.1,ENST00000537164.1,ENST00000538548.1,ENST00000541286.1,ENST00000261674.4	chr12	132237667:132237908:132238912:132239044:132239930:132240024,	132238913	132239044	132238940	132238940	Frame_Shift_Del	C	-	p.I450fs
STAD	TCGA-D7-A6EY-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
STAD	TCGA-D7-A6EY-01	TRPM1	ENST00000560658.1,ENST00000558768.1,ENST00000560801.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31358278:31358450:31359265:31359390:31360081:31360268,	31359266	31359390	31359302	31359303	Frame_Shift_Ins	-	C	p.D211fs
STAD	TCGA-D7-A6EY-01	UBE2Q2	ENST00000267938.4,ENST00000561851.1,ENST00000569423.1	chr15	76175706:76175765:76189335:76189402:76191767:76191835,76183259:76183355:76189335:76189402:76191767:76191835,	76189336	76189402	76189396	76189396	Frame_Shift_Del	A	-	p.K364fs
STAD	TCGA-D7-A6EY-01	PDE8A	ENST00000310298.4,ENST00000394553.1,ENST00000557957.1	chr15	85626786:85626875:85634274:85634412:85641178:85641267,85632568:85632647:85634274:85634412:85641178:85641267,	85634275	85634412	85634360	85634360	Frame_Shift_Del	A	-	p.E267fs
STAD	TCGA-D7-A6EY-01	TNRC6A	ENST00000491718.1,ENST00000315183.7,ENST00000567232.1,ENST00000395799.3,ENST00000450465.2	chr16	24805864:24806040:24807227:24807260:24808810:24808824,	24807228	24807260	24807240	24807240	Frame_Shift_Del	A	-	p.K1182fs
STAD	TCGA-D7-A6EY-01	ZNF521	ENST00000538137.2,ENST00000584787.1,ENST00000361524.3	chr18	22775123:22775208:22804308:22807661:22901971:22902151,	22804309	22807661	22806910	22806910	Frame_Shift_Del	T	-	p.E324fs
STAD	TCGA-D7-A6EY-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
STAD	TCGA-D7-A6EY-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590306	5590306	Frame_Shift_Del	C	-	p.G836fs
STAD	TCGA-D7-A6EY-01	HSD11B1L	ENST00000577917.1,ENST00000301382.4	chr19	5681047:5681282:5684829:5684916:5686910:5687002,	5684830	5684916	5684870	5684870	Frame_Shift_Del	G	-	p.L9fs
STAD	TCGA-D7-A6EY-01	HSD11B1L	ENST00000578167.1	chr19	5681047:5681282:5684829:5685130:5686910:5687002,	5684830	5685130	5684870	5684870	Frame_Shift_Del	G	-	p.L9fs
STAD	TCGA-D7-A6EY-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.K115fs
STAD	TCGA-D7-A6EY-01	CTSA	ENST00000606788.1,ENST00000191018.5,ENST00000372484.3,ENST00000354880.5,ENST00000372459.2	chr20	44525642:44525679:44526355:44526445:44526643:44526748,	44526356	44526445	44526408	44526409	Frame_Shift_Ins	-	G	p.R424fs
STAD	TCGA-D7-A6EY-01	FAM83F	ENST00000473717.1,ENST00000333407.6	chr22	40415890:40416012:40417293:40417967:40425519:40426035,	40417294	40417967	40417669	40417670	Frame_Shift_Ins	-	C	p.LP385fs
STAD	TCGA-D7-A6EY-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50718058:50718205:50718433:50718500:50718917:50719099,	50718434	50718500	50718488	50718489	Frame_Shift_Del	CA	-	p.V1397fs
STAD	TCGA-D7-A6EY-01	FGD1	ENST00000375135.3	chrX	54495219:54495309:54496448:54496890:54497015:54497193,	54496449	54496890	54496632	54496632	Frame_Shift_Del	G	-	p.P306fs
STAD	TCGA-D7-A6EY-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472510	70472511	Frame_Shift_Del	AG	-	p.L199fs
STAD	TCGA-D7-A6EZ-01	TRERF1	ENST00000340840.2,ENST00000372917.4,ENST00000354325.2	chr6	42225872:42225939:42227076:42227461:42232441:42232592,	42227077	42227461	42227417	42227417	Frame_Shift_Del	C	-	p.E663fs
STAD	TCGA-D7-A6EZ-01	TMEM138	ENST00000278826.6,ENST00000451389.2,ENST00000507563.2,ENST00000545420.1	chr11	61131904:61131990:61133516:61133688:61135394:61135470,	61133517	61133688	61133531	61133546	Frame_Shift_Del	CAGTCCTCTTCAACAT	-	p.AVLFNI48fs
STAD	TCGA-D7-A6F2-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
STAD	TCGA-D7-A748-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072236	63072237	Frame_Shift_Ins	-	T	p.VF491fs
STAD	TCGA-D7-A74A-01	PRRT1	ENST00000211413.5	chr6	32117313:32117499:32118144:32118683:32119585:32119676,	32118145	32118683	32118421	32118421	Frame_Shift_Del	G	-	p.A94fs
STAD	TCGA-D7-A74A-01	CCNC	ENST00000369220.4	chr6	99994270:99994350:99997383:99997448:99998093:99998185,	99997384	99997448	99997433	99997433	Frame_Shift_Del	G	-	p.T183fs
STAD	TCGA-D7-A74A-01	CCNC	ENST00000520371.1,ENST00000524049.1,ENST00000523799.1,ENST00000520429.1,ENST00000484049.2,ENST00000518714.1,ENST00000523961.1,ENST00000486428.2,ENST00000523985.1	chr6	99994270:99994350:99997383:99997451:99998093:99998185,	99997384	99997451	99997433	99997433	Frame_Shift_Del	G	-	p.T183fs
STAD	TCGA-D7-A74B-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579394	7579400	Frame_Shift_Del	GGGACAG	-	p.SVP96fs
STAD	TCGA-F1-A72C-01	TARS	ENST00000502553.1,ENST00000265112.3,ENST00000514259.1	chr5	33445429:33445510:33448646:33448837:33453398:33453517,33445429:33445510:33448646:33448837:33453393:33453451,	33448647	33448837	33448783	33448784	Frame_Shift_Ins	-	GG	p.R92fs
STAD	TCGA-F1-A72C-01	PSIP1	ENST00000380738.4,ENST00000380733.4	chr9	15466745:15466857:15468627:15468841:15468954:15469056,	15468628	15468841	15468821	15468824	Frame_Shift_Del	ACTA	-	p.VS408fs
STAD	TCGA-F1-A72C-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51160799	51160799	Frame_Shift_Del	A	-	p.E1500fs
STAD	TCGA-FP-A8CX-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844802	123844803	Frame_Shift_Del	AG	-	p.EE929fs
STAD	TCGA-FP-A9TM-01	KMT2C	ENST00000558084.1,ENST00000262189.6,ENST00000355193.2,ENST00000473186.1	chr7	151877795:151879679:151880058:151880241:151882642:151882716,	151880059	151880241	151880236	151880236	Frame_Shift_Del	T	-	p.K1696fs
STAD	TCGA-FP-A9TM-01	NOVA1	ENST00000344429.5,ENST00000465357.2,ENST00000547619.1,ENST00000539517.2,ENST00000574031.1	chr14	26949182:26949349:27064615:27064759:27066506:27066642,	27064616	27064759	27064638	27064641	Frame_Shift_Del	AGAC	-	p.LS85fs
STAD	TCGA-FP-A9TM-01	MYO18A	ENST00000354329.4,ENST00000590242.1,ENST00000530254.2,ENST00000527372.1,ENST00000531253.1,ENST00000533112.1,ENST00000528564.1	chr17	27448127:27448229:27448564:27448741:27448868:27448975,	27448565	27448741	27448662	27448662	Frame_Shift_Del	A	-	p.L425fs
STAD	TCGA-HF-A5NB-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
STAD	TCGA-HF-A5NB-01	SPATA21	ENST00000466212.1	chr1	16737272:16737410:16748405:16748689:16752018:16752226,	16748406	16748689	16748417	16748417	Frame_Shift_Del	T	-	p.K28fs
STAD	TCGA-HF-A5NB-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088769	27088770	Frame_Shift_Ins	-	G	p.R793fs
STAD	TCGA-HF-A5NB-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676493	53676493	Frame_Shift_Del	T	-	p.F384fs
STAD	TCGA-HF-A5NB-01	LRRIQ3	ENST00000395089.1,ENST00000415760.1,ENST00000354431.4	chr1	74621416:74621550:74648221:74648545:74649119:74649178,	74648222	74648545	74648381	74648382	Frame_Shift_Del	TT	-	p.K138fs
STAD	TCGA-HF-A5NB-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.A377fs
STAD	TCGA-HF-A5NB-01	TOR3A	ENST00000367627.3,ENST00000352445.6,ENST00000483887.1	chr1	179052074:179052188:179054762:179055028:179057045:179057218,	179054763	179055028	179054966	179054967	Frame_Shift_Del	TG	-	p.C193fs
STAD	TCGA-HF-A5NB-01	RAB3GAP2	ENST00000358951.2	chr1	220335539:220335610:220338074:220338141:220340634:220340741,	220338075	220338141	220338127	220338127	Frame_Shift_Del	A	-	p.F1034fs
STAD	TCGA-HF-A5NB-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.P864fs
STAD	TCGA-HF-A5NB-01	MYT1L	ENST00000428368.2	chr2	1915791:1915882:1920976:1921111:1926063:1927035,	1920977	1921111	1921068	1921068	Frame_Shift_Del	G	-	p.P509fs
STAD	TCGA-HF-A5NB-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379233	29379233	Frame_Shift_Del	A	-	p.S393fs
STAD	TCGA-HF-A5NB-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977650	99977650	Frame_Shift_Del	A	-	p.K99fs
STAD	TCGA-HF-A5NB-01	CCDC173	ENST00000447353.1	chr2	170505691:170505856:170506838:170507031:170510584:170510724,	170506839	170507031	170506881	170506882	Frame_Shift_Ins	-	T	p.K370fs
STAD	TCGA-HF-A5NB-01	AOX1	ENST00000465297.1,ENST00000260930.6,ENST00000485106.1,ENST00000374700.2	chr2	201533403:201533526:201534297:201534465:201535351:201535373,	201534298	201534465	201534337	201534337	Frame_Shift_Del	T	-	p.F1281fs
STAD	TCGA-HF-A5NB-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000452931.1,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000310931.4	chr2	242186470:242186557:242187417:242187531:242187658:242187763,	242187418	242187531	242187497	242187498	Frame_Shift_Ins	-	T	p.*551fs
STAD	TCGA-HF-A5NB-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414122	1414122	Frame_Shift_Del	A	-	p.L544fs
STAD	TCGA-HF-A5NB-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637700	52637700	Frame_Shift_Del	A	-	p.F840fs
STAD	TCGA-HF-A5NB-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142241569:142241683:142242834:142243041:142253921:142254047,	142242835	142243041	142242920	142242921	Frame_Shift_Ins	-	C	p.M1356fs
STAD	TCGA-HF-A5NB-01	WDR49	ENST00000453925.2,ENST00000472600.1,ENST00000308378.3,ENST00000476376.1	chr3	167217940:167218087:167223094:167223204:167240102:167240173,	167223095	167223204	167223102	167223102	Frame_Shift_Del	T	-	p.K607fs
STAD	TCGA-HF-A5NB-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859372	Frame_Shift_Del	A	-	p.P230fs
STAD	TCGA-HF-A5NB-01	UGT2A1	ENST00000503640.1	chr4	70460879:70460967:70461967:70462099:70464963:70465112,	70461968	70462099	70462026	70462026	Frame_Shift_Del	T	-	p.N313fs
STAD	TCGA-HF-A5NB-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.K613fs
STAD	TCGA-HF-A5NB-01	ETF1	ENST00000503014.1,ENST00000499810.2,ENST00000360541.5	chr5	137844357:137844505:137846253:137846318:137846733:137846889,	137846254	137846318	137846299	137846302	Frame_Shift_Del	TAGA	-	p.YL312fs
STAD	TCGA-HF-A5NB-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Del	GA	-	p.R889fs
STAD	TCGA-HF-A5NB-01	PRRC2A	ENST00000376033.2,ENST00000376007.4	chr6	31602248:31602334:31602529:31602754:31602908:31603049,	31602530	31602754	31602641	31602641	Frame_Shift_Del	C	-	p.P1684fs
STAD	TCGA-HF-A5NB-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76112249	76112249	Frame_Shift_Del	A	-	p.P231fs
STAD	TCGA-HF-A5NB-01	BCAP29	ENST00000379119.2,ENST00000445771.2,ENST00000465919.1,ENST00000379117.2,ENST00000005259.4,ENST00000442065.1,ENST00000457837.1,ENST00000479917.1,ENST00000491150.1,ENST00000421217.1	chr7	107224363:107224427:107234399:107234550:107236311:107236366,	107234400	107234550	107234540	107234540	Frame_Shift_Del	T	-	p.F113fs
STAD	TCGA-HF-A5NB-01	AP3M2	ENST00000518421.1	chr8	42010602:42010623:42012133:42012478:42015458:42015603,42011995:42012054:42012133:42012478:42015458:42015603,	42012134	42012478	42012265	42012266	Frame_Shift_Ins	-	A	p.*K20fs
STAD	TCGA-HF-A5NB-01	AP3M2	ENST00000174653.3	chr8	42010463:42010623:42012083:42012478:42015458:42015603,	42012084	42012478	42012265	42012266	Frame_Shift_Ins	-	A	p.*K20fs
STAD	TCGA-HF-A5NB-01	DNAJA1	ENST00000544625.1	chr9	33025283:33025381:33026472:33026614:33029882:33029987,	33026473	33026614	33026514	33026515	Frame_Shift_Ins	-	G	p.W11fs
STAD	TCGA-HF-A5NB-01	AQP3	ENST00000494313.1,ENST00000297991.4	chr9	33441772:33442209:33442298:33442516:33442849:33442968,	33442299	33442516	33442483	33442484	Frame_Shift_Ins	-	CA	p.G176fs
STAD	TCGA-HF-A5NB-01	CARD9	ENST00000460290.1,ENST00000371732.5,ENST00000489932.2,ENST00000371734.3	chr9	139259004:139259011:139259592:139259669:139261251:139261297,	139259593	139259669	139259649	139259650	Frame_Shift_Ins	-	C	p.P460fs
STAD	TCGA-HF-A5NB-01	CELF2	ENST00000354897.3,ENST00000417956.2,ENST00000537122.1,ENST00000416382.2,ENST00000427450.1,ENST00000450189.1,ENST00000379261.4,ENST00000399850.3,ENST00000354440.2,ENST00000609870.1,ENST00000315874.4,ENST00000542579.1,ENST00000608830.1	chr10	11363169:11363349:11367798:11367942:11370888:11371055,	11367799	11367942	11367878	11367878	Frame_Shift_Del	T	-	p.P445fs
STAD	TCGA-HF-A5NB-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151191	13151192	Frame_Shift_Ins	-	C	p.GP23fs
STAD	TCGA-HF-A5NB-01	HECTD2	ENST00000536715.1,ENST00000298068.5	chr10	93240850:93240896:93242723:93242833:93244263:93244412,	93242724	93242833	93242829	93242829	Frame_Shift_Del	A	-	p.K274fs
STAD	TCGA-HF-A5NB-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9048910:9049108:9051430:9051592,	9048911	9049108	9048995	9048996	Frame_Shift_Ins	-	G	p.A873fs
STAD	TCGA-HF-A5NB-01	SLC22A6	ENST00000377871.3,ENST00000360421.4,ENST00000421062.2,ENST00000537349.1,ENST00000458333.2,ENST00000540654.1	chr11	62748731:62748855:62749313:62749482:62751008:62751163,	62749314	62749482	62749334	62749334	Frame_Shift_Del	A	-	p.F259fs
STAD	TCGA-HF-A5NB-01	USP35	ENST00000530546.1,ENST00000529308.1,ENST00000526425.1,ENST00000441408.2,ENST00000528910.1	chr11	77911178:77911280:77911695:77911854:77916887:77917081,	77911696	77911854	77911709	77911710	Frame_Shift_Ins	-	C	p.T351fs
STAD	TCGA-HF-A5NB-01	CLSTN3	ENST00000537408.1,ENST00000266546.6	chr12	7295464:7295622:7295758:7295907:7301567:7301794,	7295759	7295907	7295797	7295797	Frame_Shift_Del	G	-	p.E591fs
STAD	TCGA-HF-A5NB-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57112356	57112356	Frame_Shift_Del	G	-	p.P986fs
STAD	TCGA-HF-A5NB-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921002	57921002	Frame_Shift_Del	C	-	p.P693fs
STAD	TCGA-HF-A5NB-01	SSH1	ENST00000546433.1,ENST00000360239.3,ENST00000326495.5	chr12	109178572:109183020:109186061:109186605:109192775:109192976,	109186062	109186605	109186436	109186436	Frame_Shift_Del	G	-	p.L507fs
STAD	TCGA-HF-A5NB-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.P139fs
STAD	TCGA-HF-A5NB-01	KLHDC2	ENST00000555739.1,ENST00000556559.1,ENST00000554589.1,ENST00000298307.5,ENST00000555443.1	chr14	50246465:50246524:50246930:50247040:50247420:50247493,	50246931	50247040	50246968	50246971	Frame_Shift_Del	CACT	-	p.HS271fs
STAD	TCGA-HF-A5NB-01	TDP1	ENST00000554180.1,ENST00000393454.2	chr14	90422921:90423144:90429451:90430017:90432490:90432534,90422298:90422314:90429451:90430017:90432490:90432534,	90429452	90430017	90429831	90429832	Frame_Shift_Ins	-	A	p.K125fs
STAD	TCGA-HF-A5NB-01	TDP1	ENST00000553617.1	chr14	90422298:90422314:90429568:90430017:90432490:90432534,	90429569	90430017	90429831	90429832	Frame_Shift_Ins	-	A	p.K125fs
STAD	TCGA-HF-A5NB-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
STAD	TCGA-HF-A5NB-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
STAD	TCGA-HF-A5NB-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
STAD	TCGA-HF-A5NB-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
STAD	TCGA-HF-A5NB-01	SH2B1	ENST00000359285.5	chr16	28874988:28875075:28877332:28878354:28878651:28878753,28875198:28875266:28877332:28878354:28878651:28878753,	28877333	28878354	28877470	28877470	Frame_Shift_Del	C	-	p.P24fs
STAD	TCGA-HF-A5NB-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P598fs
STAD	TCGA-HF-A5NB-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749493	33749493	Frame_Shift_Del	A	-	p.F185fs
STAD	TCGA-HF-A5NB-01	COPZ2	ENST00000006101.4,ENST00000584666.1,ENST00000581756.1,ENST00000579263.1	chr17	46110051:46110107:46110576:46110668:46111228:46111238,	46110577	46110668	46110652	46110652	Frame_Shift_Del	A	-	p.F93fs
STAD	TCGA-HF-A5NB-01	THOC1	ENST00000579232.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6,ENST00000577552.1	chr18	226800:226901:246323:246455:247848:247908,	246324	246455	246429	246429	Frame_Shift_Del	A	-	p.F271fs
STAD	TCGA-HF-A5NB-01	APCDD1	ENST00000355285.5	chr18	10472003:10472058:10485458:10485780:10487586:10487660,	10485459	10485780	10485528	10485528	Frame_Shift_Del	C	-	p.P283fs
STAD	TCGA-HF-A5NB-01	ICAM3	ENST00000160262.5,ENST00000589261.1	chr19	10445203:10445458:10445741:10446029:10446346:10446449,	10445742	10446029	10446011	10446011	Frame_Shift_Del	G	-	p.P146fs
STAD	TCGA-HF-A5NB-01	ICAM3	ENST00000592439.1	chr19	10445203:10445458:10445816:10446029:10446346:10446449,	10445817	10446029	10446011	10446011	Frame_Shift_Del	G	-	p.P146fs
STAD	TCGA-HF-A5NB-01	ADNP	ENST00000396032.3	chr20	49518553:49518646:49520425:49520538:49545187:49545353,49518553:49518646:49520425:49520538:49547362:49547750,	49520426	49520538	49520469	49520470	Frame_Shift_Ins	-	T	p.T22fs
STAD	TCGA-HF-A5NB-01	CDC45	ENST00000404724.3,ENST00000493724.1,ENST00000263201.1,ENST00000437685.2,ENST00000407835.1	chr22	19504049:19504168:19504339:19504416:19506366:19506432,	19504340	19504416	19504403	19504403	Frame_Shift_Del	T	-	p.H541fs
STAD	TCGA-HF-A5NB-01	MED15	ENST00000489651.1,ENST00000263205.7	chr22	20922852:20922918:20936897:20937034:20937126:20937254,20929399:20929519:20936897:20937034:20937126:20937254,	20936898	20937034	20936976	20936976	Frame_Shift_Del	C	-	p.P452fs
STAD	TCGA-IN-A6RL-01	SGIP1	ENST00000237247.6	chr1	67098752:67098777:67099762:67099846:67105459:67105516,	67099763	67099846	67099768	67099769	Frame_Shift_Ins	-	A	p.GK35fs
STAD	TCGA-IN-A6RL-01	TGM3	ENST00000381458.5	chr20	2308765:2309011:2312647:2312956:2315761:2315919,	2312648	2312956	2312674	2312675	Frame_Shift_Ins	-	A	p.K454fs
STAD	TCGA-IN-A6RO-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678784	52678784	Frame_Shift_Del	T	-	p.I279fs
STAD	TCGA-IN-A6RO-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25785849:25785912:25789845:25789986:25792076:25792196,	25789846	25789986	25789889	25789892	Frame_Shift_Del	TCCG	-	p.TE724fs
STAD	TCGA-IN-A6RO-01	HACE1	ENST00000369127.4,ENST00000416605.2,ENST00000517424.1,ENST00000262903.4,ENST00000517995.1	chr6	105192386:105192485:105198215:105198347:105219067:105219264,	105198216	105198347	105198276	105198277	Frame_Shift_Ins	-	A	p.S761fs
STAD	TCGA-IN-A6RO-01	OXA1L	ENST00000481218.1,ENST00000285848.5,ENST00000604262.1,ENST00000431881.2,ENST00000442110.1,ENST00000412791.1,ENST00000358043.5	chr14	23237166:23237380:23238999:23239143:23239401:23239446,	23239000	23239143	23239055	23239055	Frame_Shift_Del	G	-	p.E149fs
STAD	TCGA-IN-A6RO-01	OXA1L	ENST00000495424.1	chr14	23237166:23237380:23239005:23239143:23239401:23239446,	23239006	23239143	23239055	23239055	Frame_Shift_Del	G	-	p.E149fs
STAD	TCGA-IN-A6RO-01	GRIPAP1	ENST00000376423.4	chrX	48838007:48838103:48839390:48839504:48839639:48839852,	48839391	48839504	48839408	48839420	Frame_Shift_Del	GCCGTTCAAACCA	-	p.WFERR471fs
STAD	TCGA-IN-A7NR-01	EHF	ENST00000529527.1,ENST00000530286.1,ENST00000533754.1,ENST00000450654.2,ENST00000257831.3,ENST00000532302.1,ENST00000531794.1,ENST00000525253.1	chr11	34667985:34668231:34670565:34670628:34673088:34673153,	34670566	34670628	34670588	34670588	Frame_Shift_Del	C	-	p.F122fs
STAD	TCGA-IN-A7NU-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
STAD	TCGA-IN-A7NU-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
STAD	TCGA-IN-A7NU-01	ARID2	ENST00000479608.1,ENST00000334344.6,ENST00000444670.1,ENST00000422737.1,ENST00000457135.1	chr12	46246077:46246679:46254583:46254732:46285562:46285701,	46254584	46254732	46254692	46254692	Frame_Shift_Del	C	-	p.P1628fs
STAD	TCGA-IN-A7NU-01	PRR11	ENST00000581182.1,ENST00000578542.1,ENST00000580177.1	chr17	57233117:57233166:57247108:57247241:57262414:57262565,	57247109	57247241	57247170	57247171	Frame_Shift_Ins	-	A	p.LK19fs
STAD	TCGA-IN-AB1V-01	AJAP1	ENST00000378191.4	chr1	4715104:4715514:4771959:4772759:4829912:4830000,	4771960	4772759	4772240	4772240	Frame_Shift_Del	C	-	p.P104fs
STAD	TCGA-KB-A6F7-01	TMEM51	ENST00000451326.2	chr1	15536985:15537058:15541390:15541927:15545821:15545842,15480284:15480450:15541390:15541927:15545821:15545842,15479072:15479280:15541390:15541927:15545821:15545842,	15541391	15541927	15541793	15541794	Frame_Shift_Ins	-	G	p.VG70fs
STAD	TCGA-KB-A6F7-01	ABCB8	ENST00000498578.1,ENST00000477092.1,ENST00000358849.4,ENST00000477719.1	chr7	150730016:150730148:150730691:150731004:150731359:150731515,150725562:150725697:150730691:150731004:150731359:150731515,	150730692	150731004	150730702	150730726	Frame_Shift_Del	GGCTACCGCAGCTCCTCCCTCCTCC	-	p.GYRSSSLLR36fs
STAD	TCGA-KB-A6F7-01	GSPT1	ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11969617:11969786:11969942:11970032:11971263:11971437,	11969943	11970032	11969978	11969985	Frame_Shift_Del	GCAGCACC	-	p.AVLH550fs
STAD	TCGA-KB-A93G-01	CHRNA9	ENST00000310169.2	chr4	40339302:40339381:40350898:40351431:40355995:40356111,	40350899	40351431	40351378	40351381	Frame_Shift_Del	TTCA	-	p.FQ282fs
STAD	TCGA-KB-A93J-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561465	145561466	Frame_Shift_Ins	-	TAAA	p.-384fs
STAD	TCGA-KB-A93J-01	CDC42BPA	ENST00000366769.3,ENST00000334218.5,ENST00000366767.3,ENST00000448940.1	chr1	227227831:227227937:227235627:227235711:227257477:227257554,	227235628	227235711	227235703	227235704	Frame_Shift_Ins	-	TC	p.V971fs
STAD	TCGA-KB-A93J-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102445965:102446056:102448182:102448313:102450870:102450925,	102448183	102448313	102448263	102448275	Frame_Shift_Del	CCTGAGGTCATCG	-	p.PEVIA197fs
STAD	TCGA-KB-A93J-01	LIPH	ENST00000424591.2	chr3	185251463:185251467:185252552:185252920:185270210:185270298,	185252553	185252920	185252832	185252833	Frame_Shift_Ins	-	T	p.Y46fs
STAD	TCGA-KB-A93J-01	CCNG2	ENST00000316355.5,ENST00000502280.1,ENST00000497512.1,ENST00000395640.1,ENST00000354403.5,ENST00000509972.1	chr4	78080519:78080657:78081873:78082124:78082632:78082711,	78081874	78082124	78081964	78081965	Frame_Shift_Ins	-	A	p.*123fs
STAD	TCGA-KB-A93J-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835794	82835795	Frame_Shift_Ins	-	G	p.V2325fs
STAD	TCGA-KB-A93J-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860420	96860421	Frame_Shift_Ins	-	G	p.V471fs
STAD	TCGA-KB-A93J-01	TBC1D2	ENST00000375064.1,ENST00000342112.5,ENST00000375066.5	chr9	100975389:100975500:100983114:100983510:100991233:100991322,	100983115	100983510	100983179	100983180	Frame_Shift_Ins	-	GA	p.F437fs
STAD	TCGA-KB-A93J-01	WNK1	ENST00000315939.6,ENST00000340908.4,ENST00000530271.2,ENST00000535698.1	chr12	987437:987527:988738:989197:989886:989980,	988739	989197	988923	988924	Frame_Shift_Ins	-	AG	p.S853fs
STAD	TCGA-KB-A93J-01	POP5	ENST00000357500.4	chr12	121017576:121017726:121018917:121019060:121019145:121019182,	121018918	121019060	121019044	121019048	Frame_Shift_Del	GTTCG	-	p.CEL11fs
STAD	TCGA-KB-A93J-01	POP5	ENST00000543355.1	chr12	121017576:121017726:121018798:121019060:121019145:121019182,	121018799	121019060	121019044	121019048	Frame_Shift_Del	GTTCG	-	p.CEL11fs
STAD	TCGA-KB-A93J-01	DUOX1	ENST00000321429.4,ENST00000561166.1,ENST00000559219.1,ENST00000389037.3,ENST00000561220.2	chr15	45439743:45439856:45440101:45440195:45440469:45440645,	45440102	45440195	45440176	45440177	Frame_Shift_Ins	-	AGTT	p.V875fs
STAD	TCGA-KB-A93J-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579528	7579529	Frame_Shift_Ins	-	CATT	p.F53fs
STAD	TCGA-KB-A93J-01	COG1	ENST00000438720.3,ENST00000299886.4	chr17	71199138:71199285:71199770:71199932:71201691:71201819,	71199771	71199932	71199778	71199788	Frame_Shift_Del	GGTATGTACAG	-	p.WYVQ743fs
STAD	TCGA-KB-A93J-01	ABHD8	ENST00000247706.3	chr19	17402939:17403640:17405096:17405313:17405483:17405654,	17405097	17405313	17405215	17405216	Frame_Shift_Ins	-	CGCT	p.P344fs
STAD	TCGA-KB-A93J-01	FKBP8	ENST00000597547.1,ENST00000453489.2,ENST00000222308.4,ENST00000608443.1,ENST00000599540.2,ENST00000597611.3,ENST00000594844.1,ENST00000597960.3,ENST00000596558.2	chr19	18650180:18650269:18650360:18650530:18652488:18652584,	18650361	18650530	18650522	18650523	Frame_Shift_Ins	-	C	p.V101fs
STAD	TCGA-KB-A93J-01	C2CD2	ENST00000482084.1,ENST00000482186.1,ENST00000380486.3,ENST00000329623.7	chr21	43306781:43309453:43319161:43319471:43321730:43321761,	43319162	43319471	43319356	43319356	Frame_Shift_Del	G	-	p.P560fs
STAD	TCGA-MX-A5UJ-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
STAD	TCGA-MX-A5UJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088787	27088788	Frame_Shift_Ins	-	G	p.R799fs
STAD	TCGA-MX-A5UJ-01	RHBDL2	ENST00000540558.1	chr1	39381233:39381382:39384638:39385009:39407353:39407456,	39384639	39385009	39384905	39384905	Frame_Shift_Del	C	-	p.E62fs
STAD	TCGA-MX-A5UJ-01	ACP1	ENST00000484464.1,ENST00000480874.1,ENST00000442386.1,ENST00000272065.5	chr2	271865:271939:272036:272150:276979:277085,271892:271939:272036:272150:275139:275200,	272037	272150	272080	272081	Frame_Shift_Ins	-	C	p.T54fs
STAD	TCGA-MX-A5UJ-01	ACTG2	ENST00000438902.2,ENST00000409624.1,ENST00000345517.3,ENST00000409731.3	chr2	74136181:74136266:74140611:74140773:74141806:74141998,	74140612	74140773	74140744	74140745	Frame_Shift_Ins	-	AG	p.R195fs
STAD	TCGA-MX-A5UJ-01	ARHGAP15	ENST00000295095.6	chr2	144244941:144245064:144276834:144276933:144313976:144314054,	144276835	144276933	144276877	144276877	Frame_Shift_Del	A	-	p.E290fs
STAD	TCGA-MX-A5UJ-01	PLCD4	ENST00000417849.1,ENST00000483685.1,ENST00000432688.1,ENST00000469493.1,ENST00000450993.2,ENST00000415854.1	chr2	219480429:219480484:219480626:219480785:219483301:219483416,	219480627	219480785	219480727	219480728	Frame_Shift_Ins	-	A	p.*42fs
STAD	TCGA-MX-A5UJ-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414122	1414122	Frame_Shift_Del	A	-	p.L544fs
STAD	TCGA-MX-A5UJ-01	MYD88	ENST00000421516.1,ENST00000417037.2	chr3	38181354:38181489:38181878:38182083:38182247:38182339,	38181879	38182083	38181987	38181988	Frame_Shift_Del	TG	-	p.L204fs
STAD	TCGA-MX-A5UJ-01	MYD88	ENST00000424893.1	chr3	38181354:38181489:38181878:38182059:38182247:38182339,38180155:38180519:38181878:38182059:38182247:38182339,	38181879	38182059	38181987	38181988	Frame_Shift_Del	TG	-	p.L204fs
STAD	TCGA-MX-A5UJ-01	ULK4	ENST00000301831.4,ENST00000460406.1	chr3	41841624:41841785:41860914:41860998:41877355:41877463,	41860915	41860998	41860985	41860985	Frame_Shift_Del	T	-	p.K593fs
STAD	TCGA-MX-A5UJ-01	AMOTL2	ENST00000506326.1,ENST00000249883.5	chr3	134076392:134076605:134077381:134077561:134078124:134078345,	134077382	134077561	134077461	134077462	Frame_Shift_Ins	-	G	p.R792fs
STAD	TCGA-MX-A5UJ-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000513145.1	chr3	134076392:134076605:134077381:134077558:134078124:134078345,	134077382	134077558	134077461	134077462	Frame_Shift_Ins	-	G	p.R792fs
STAD	TCGA-MX-A5UJ-01	EIF5A2	ENST00000295822.2,ENST00000474417.1	chr3	170612080:170612212:170624777:170624882:170625430:170625588,	170624778	170624882	170624844	170624844	Frame_Shift_Del	T	-	p.K68fs
STAD	TCGA-MX-A5UJ-01	DCUN1D1	ENST00000492563.1	chr3	182681787:182681837:182683466:182683541:182698274:182698308,	182683467	182683541	182683528	182683528	Frame_Shift_Del	G	-	p.S7fs
STAD	TCGA-MX-A5UJ-01	HNRNPDL	ENST00000514511.1	chr4	83348342:83348457:83348585:83348717:83349170:83349332,83348342:83348457:83348585:83348717:83350400:83350578,	83348586	83348717	83348625	83348625	Frame_Shift_Del	T	-	p.K289fs
STAD	TCGA-MX-A5UJ-01	BANK1	ENST00000322953.4	chr4	102711886:102712107:102750964:102751363:102776191:102776346,	102750965	102751363	102751218	102751218	Frame_Shift_Del	A	-	p.P93fs
STAD	TCGA-MX-A5UJ-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824638	114824639	Frame_Shift_Ins	-	A	p.LF197fs
STAD	TCGA-MX-A5UJ-01	TMA16	ENST00000508268.1,ENST00000513134.1,ENST00000358572.5,ENST00000513272.1	chr4	164415859:164415956:164428184:164428297:164433973:164434011,	164428185	164428297	164428219	164428219	Frame_Shift_Del	A	-	p.E13fs
STAD	TCGA-MX-A5UJ-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14488156	14488156	Frame_Shift_Del	C	-	p.F2473fs
STAD	TCGA-MX-A5UJ-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985083	36985083	Frame_Shift_Del	A	-	p.K603fs
STAD	TCGA-MX-A5UJ-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334907	Frame_Shift_Del	T	-	p.K923fs
STAD	TCGA-MX-A5UJ-01	ZCCHC9	ENST00000407610.3	chr5	80597459:80597874:80600559:80600960:80604379:80604530,80597442:80597489:80600559:80600960:80604379:80604471,80597480:80597517:80600559:80600960:80604379:80604471,	80600560	80600960	80600751	80600751	Frame_Shift_Del	A	-	p.K60fs
STAD	TCGA-MX-A5UJ-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
STAD	TCGA-MX-A5UJ-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
STAD	TCGA-MX-A5UJ-01	RHOBTB3	ENST00000510313.1,ENST00000379982.3,ENST00000504179.1	chr5	95103843:95103870:95115955:95116129:95119500:95119573,	95115956	95116129	95116041	95116042	Frame_Shift_Del	AA	-	p.AK456fs
STAD	TCGA-MX-A5UJ-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496721	15496722	Frame_Shift_Ins	-	G	p.G422fs
STAD	TCGA-MX-A5UJ-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214774	108214774	Frame_Shift_Del	T	-	p.K530fs
STAD	TCGA-MX-A5UJ-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899920	Frame_Shift_Del	A	-	p.K134fs
STAD	TCGA-MX-A5UJ-01	PRKAR1B	ENST00000417852.1	chr7	720192:720363:750965:751164:767226:767287,720192:720363:750965:751164:766846:766874,	750966	751164	751064	751065	Frame_Shift_Ins	-	C	p.P27fs
STAD	TCGA-MX-A5UJ-01	CBX3	ENST00000497498.1,ENST00000396386.2,ENST00000456948.1,ENST00000337620.4	chr7	26242596:26242642:26245987:26246130:26248012:26248032,	26245988	26246130	26245999	26245999	Frame_Shift_Del	A	-	p.G12fs
STAD	TCGA-MX-A5UJ-01	FBXO24	ENST00000241071.6,ENST00000468962.1,ENST00000488079.1,ENST00000427939.2	chr7	100192005:100192164:100192724:100192846:100193197:100193244,	100192725	100192846	100192728	100192729	Frame_Shift_Ins	-	G	p.R319fs
STAD	TCGA-MX-A5UJ-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107635331:107635405:107638801:107638937:107642002:107642178,	107638802	107638937	107638926	107638926	Frame_Shift_Del	T	-	p.K99fs
STAD	TCGA-MX-A5UJ-01	LMBR1	ENST00000461603.1,ENST00000448926.1,ENST00000540390.1,ENST00000359422.4,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1,ENST00000454132.1	chr7	156520623:156520701:156521337:156521414:156526870:156526951,	156521338	156521414	156521402	156521402	Frame_Shift_Del	T	-	p.K284fs
STAD	TCGA-MX-A5UJ-01	DMTN	ENST00000358242.3,ENST00000523300.1,ENST00000517305.1,ENST00000523623.1,ENST00000265800.5,ENST00000443491.2,ENST00000520174.1,ENST00000415253.1,ENST00000517804.1,ENST00000517418.1,ENST00000519850.1,ENST00000432128.1,ENST00000519907.1,ENST00000523782.2,ENST00000523266.1,ENST00000381470.3	chr8	21925037:21925193:21926526:21926571:21926929:21926967,	21926527	21926571	21926551	21926552	Frame_Shift_Ins	-	C	p.P92fs
STAD	TCGA-MX-A5UJ-01	AP3M2	ENST00000518421.1	chr8	42010602:42010623:42012133:42012478:42015458:42015603,42011995:42012054:42012133:42012478:42015458:42015603,	42012134	42012478	42012435	42012438	Frame_Shift_Del	TGTT	-	p.LF77fs
STAD	TCGA-MX-A5UJ-01	AP3M2	ENST00000174653.3	chr8	42010463:42010623:42012083:42012478:42015458:42015603,	42012084	42012478	42012435	42012438	Frame_Shift_Del	TGTT	-	p.LF77fs
STAD	TCGA-MX-A5UJ-01	ZFAND1	ENST00000517588.1,ENST00000522520.1,ENST00000523361.1,ENST00000220669.5,ENST00000520635.1,ENST00000519523.1,ENST00000521287.1,ENST00000520604.1,ENST00000521895.1	chr8	82615333:82615359:82626152:82626274:82627038:82627130,	82626153	82626274	82626226	82626226	Frame_Shift_Del	T	-	p.N136fs
STAD	TCGA-MX-A5UJ-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663648	103663649	Frame_Shift_Ins	-	G	p.R293fs
STAD	TCGA-MX-A5UJ-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19290755:19290874:19296005:19296244:19298053:19298120,	19296006	19296244	19296163	19296164	Frame_Shift_Ins	-	T	p.L84fs
STAD	TCGA-MX-A5UJ-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112460	36112461	Frame_Shift_Ins	-	A	p.K683fs
STAD	TCGA-MX-A5UJ-01	CUBN	ENST00000377833.4	chr10	16948201:16948408:16949506:16949678:16955809:16955991,	16949507	16949678	16949569	16949569	Frame_Shift_Del	A	-	p.F2548fs
STAD	TCGA-MX-A5UJ-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203598	91203598	Frame_Shift_Del	A	-	p.F43fs
STAD	TCGA-MX-A5UJ-01	SCUBE2	ENST00000309263.3,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9048910:9049108:9051430:9051592,	9048911	9049108	9048995	9048996	Frame_Shift_Ins	-	G	p.A873fs
STAD	TCGA-MX-A5UJ-01	TMEM41B	ENST00000299596.4	chr11	9302200:9302588:9304917:9305140:9308001:9308140,	9304918	9305140	9304992	9304992	Frame_Shift_Del	T	-	p.K285fs
STAD	TCGA-MX-A5UJ-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635951	32635951	Frame_Shift_Del	T	-	p.N638fs
STAD	TCGA-MX-A5UJ-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.D325fs
STAD	TCGA-MX-A5UJ-01	SLC22A10	ENST00000544661.1,ENST00000332793.6,ENST00000533483.1	chr11	63071579:63071688:63072157:63072361:63078478:63078573,	63072158	63072361	63072237	63072237	Frame_Shift_Del	T	-	p.F493fs
STAD	TCGA-MX-A5UJ-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770652	Frame_Shift_Del	G	-	p.P1130fs
STAD	TCGA-MX-A5UJ-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713870	40713870	Frame_Shift_Del	A	-	p.S1636fs
STAD	TCGA-MX-A5UJ-01	ZNF740	ENST00000416904.3,ENST00000552593.1	chr12	53578674:53578824:53579170:53579260:53579737:53579815,	53579171	53579260	53579255	53579255	Frame_Shift_Del	A	-	p.K83fs
STAD	TCGA-MX-A5UJ-01	BEST3	ENST00000548658.1,ENST00000331471.4,ENST00000330891.5,ENST00000393365.1	chr12	70088149:70088244:70091426:70091593:70092984:70093065,	70091427	70091593	70091534	70091534	Frame_Shift_Del	A	-	p.F15fs
STAD	TCGA-MX-A5UJ-01	TSPAN8	ENST00000247829.3,ENST00000552128.1,ENST00000546561.1,ENST00000393330.2	chr12	71526472:71526604:71531732:71531840:71531935:71532010,	71531733	71531840	71531768	71531769	Frame_Shift_Ins	-	T	p.I137fs
STAD	TCGA-MX-A5UJ-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.P139fs
STAD	TCGA-MX-A5UJ-01	MICU2	ENST00000382374.4	chr13	22070190:22070299:22077064:22077236:22084142:22084240,	22077065	22077236	22077129	22077129	Frame_Shift_Del	A	-	p.F290fs
STAD	TCGA-MX-A5UJ-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
STAD	TCGA-MX-A5UJ-01	SPRYD7	ENST00000378195.2,ENST00000361840.3	chr13	50486841:50489296:50495613:50495716:50502054:50502221,	50495614	50495716	50495667	50495667	Frame_Shift_Del	T	-	p.N108fs
STAD	TCGA-MX-A5UJ-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878533	89878534	Frame_Shift_Ins	-	G	p.L96fs
STAD	TCGA-MX-A5UJ-01	ZNF839	ENST00000559098.1,ENST00000262236.5,ENST00000442396.2	chr14	102786294:102786390:102792321:102793224:102797958:102798183,	102792322	102793224	102793200	102793201	Frame_Shift_Del	AG	-	p.TE273fs
STAD	TCGA-MX-A5UJ-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021239	23021239	Frame_Shift_Del	T	-	p.K33fs
STAD	TCGA-MX-A5UJ-01	HERC2	ENST00000261609.7	chr15	28478579:28478707:28478809:28478942:28479215:28479430,	28478810	28478942	28478874	28478874	Frame_Shift_Del	G	-	p.P1429fs
STAD	TCGA-MX-A5UJ-01	ADAM10	ENST00000558733.1,ENST00000439637.1	chr15	58974450:58974513:59009775:59009926:59041678:59041793,	59009776	59009926	59009847	59009847	Frame_Shift_Del	T	-	p.K45fs
STAD	TCGA-MX-A5UJ-01	PKD1	ENST00000487932.1,ENST00000423118.1,ENST00000262304.4	chr16	2142496:2142593:2142954:2143094:2143544:2143739,	2142955	2143094	2143071	2143071	Frame_Shift_Del	A	-	p.F3680fs
STAD	TCGA-MX-A5UJ-01	MAZ	ENST00000219782.6	chr16	29819999:29820062:29820860:29821085:29821397:29821408,	29820861	29821085	29821017	29821017	Frame_Shift_Del	C	-	p.A479fs
STAD	TCGA-MX-A5UJ-01	ATP2A3	ENST00000572694.1,ENST00000397039.1,ENST00000397041.3,ENST00000359983.3,ENST00000352011.3,ENST00000309890.7,ENST00000397035.3,ENST00000397043.3	chr17	3844732:3844948:3845899:3846025:3846684:3846816,	3845900	3846025	3845918	3845919	Frame_Shift_Ins	-	C	p.E509fs
STAD	TCGA-MX-A5UJ-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P865fs
STAD	TCGA-MX-A5UJ-01	SLC46A1	ENST00000584995.1,ENST00000581516.1	chr17	26732065:26732486:26732904:26733015:26733474:26733617,	26732905	26733015	26732939	26732939	Frame_Shift_Del	C	-	p.G65fs
STAD	TCGA-MX-A5UJ-01	ATAD5	ENST00000321990.4	chr17	29219624:29219806:29220311:29221168:29221581:29221740,	29220312	29221168	29220775	29220776	Frame_Shift_Ins	-	A	p.E1635fs
STAD	TCGA-MX-A5UJ-01	COASY	ENST00000421097.2,ENST00000591779.1,ENST00000393818.2,ENST00000449624.1,ENST00000420359.1,ENST00000590958.1	chr17	40714950:40715340:40715978:40716193:40716463:40716595,	40715979	40716193	40716115	40716115	Frame_Shift_Del	C	-	p.D279fs
STAD	TCGA-MX-A5UJ-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562740	14562741	Frame_Shift_Ins	-	C	p.P357fs
STAD	TCGA-MX-A5UJ-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.K115fs
STAD	TCGA-MX-A5UJ-01	CPT1C	ENST00000595969.1,ENST00000295404.5	chr19	50195495:50195650:50200582:50200722:50203940:50203946,50195495:50195650:50200582:50200722:50204573:50204653,	50200583	50200722	50200614	50200615	Frame_Shift_Ins	-	C	p.T58fs
STAD	TCGA-MX-A5UJ-01	STAU1	ENST00000371828.3,ENST00000340954.7,ENST00000371802.1,ENST00000360426.4,ENST00000371856.2,ENST00000347458.5	chr20	47736518:47736665:47739628:47739772:47740911:47741124,	47739629	47739772	47739699	47739699	Frame_Shift_Del	T	-	p.K224fs
STAD	TCGA-MX-A5UJ-01	STAU1	ENST00000371792.1	chr20	47736518:47736665:47739628:47739766:47740911:47741124,	47739629	47739766	47739699	47739699	Frame_Shift_Del	T	-	p.K224fs
STAD	TCGA-MX-A5UJ-01	ATP9A	ENST00000402822.1,ENST00000338821.5	chr20	50342357:50342471:50346372:50346517:50384840:50384867,	50346373	50346517	50346454	50346454	Frame_Shift_Del	C	-	p.G44fs
STAD	TCGA-MX-A5UJ-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467047	58467047	Frame_Shift_Del	T	-	p.M788fs
STAD	TCGA-MX-A5UJ-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47570301:47570439:47571471:47571651:47571805:47571894,	47571472	47571651	47571522	47571523	Frame_Shift_Ins	-	T	p.H195fs
STAD	TCGA-MX-A5UJ-01	SH3BP1	ENST00000417536.1	chr22	38049790:38049880:38051278:38051322:38051932:38052048,	38051279	38051322	38051314	38051314	Frame_Shift_Del	C	-	p.P578fs
STAD	TCGA-MX-A5UJ-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564716	42564716	Frame_Shift_Del	G	-	p.P1942fs
STAD	TCGA-MX-A5UJ-01	IL3RA	ENST00000381469.2,ENST00000331035.4	chrX	1497551:1497657:1499915:1499997:1501283:1501358,	1499916	1499997	1499940	1499941	Frame_Shift_Ins	-	C	p.FP335fs
STAD	TCGA-MX-A5UJ-01	OPHN1	ENST00000355520.5	chrX	67273486:67273652:67283695:67284019:67292993:67293141,	67283696	67284019	67283963	67283964	Frame_Shift_Ins	-	G	p.A631fs
STAD	TCGA-MX-A5UJ-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937581	76937581	Frame_Shift_Del	T	-	p.K1057fs
STAD	TCGA-MX-A5UJ-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.K109fs
STAD	TCGA-MX-A666-01	HNRNPDL	ENST00000502762.1,ENST00000602300.1,ENST00000349655.4	chr4	83349170:83349332:83349430:83349599:83350400:83350578,	83349431	83349599	83349437	83349438	Frame_Shift_Ins	-	AC	p.G202fs
STAD	TCGA-MX-A666-01	PTPN12	ENST00000248594.6,ENST00000435495.2,ENST00000520947.1,ENST00000415482.2	chr7	77266334:77266365:77267940:77268048:77268535:77268597,	77267941	77268048	77268032	77268033	Frame_Shift_Del	AG	-	p.TE755fs
STAD	TCGA-R5-A7ZE-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018202	1018203	Frame_Shift_Ins	-	T	p.P1533fs
STAD	TCGA-R5-A7ZI-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226331	21226332	Frame_Shift_Ins	-	T	p.NE569fs
STAD	TCGA-R5-A7ZI-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071525	197071526	Frame_Shift_Ins	-	GA	p.E2286fs
STAD	TCGA-R5-A7ZI-01	CNST	ENST00000366513.4	chr1	246729815:246729965:246754813:246755243:246784730:246784886,	246754814	246755243	246755180	246755180	Frame_Shift_Del	A	-	p.K107fs
STAD	TCGA-R5-A7ZI-01	BARD1	ENST00000260947.4,ENST00000421162.1,ENST00000449967.2,ENST00000455743.1	chr2	215609790:215609883:215610445:215610578:215617170:215617202,	215610446	215610578	215610468	215610468	Frame_Shift_Del	T	-	p.K596fs
STAD	TCGA-R5-A7ZI-01	GLB1L	ENST00000295759.7,ENST00000392089.2,ENST00000356283.3,ENST00000497855.1,ENST00000409640.1	chr2	220102547:220102679:220102971:220103085:220103216:220103306,	220102972	220103085	220103038	220103038	Frame_Shift_Del	A	-	p.F425fs
STAD	TCGA-R5-A7ZI-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000504194.1,ENST00000382788.3,ENST00000338806.4	chr4	3429825:3429896:3430284:3430438:3432133:3432174,	3430285	3430438	3430399	3430399	Frame_Shift_Del	A	-	p.K1178fs
STAD	TCGA-R5-A7ZI-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85752565:85752758:85758081:85758243:85762306:85762416,	85758082	85758243	85758175	85758175	Frame_Shift_Del	A	-	p.F161fs
STAD	TCGA-R5-A7ZI-01	MROH2B	ENST00000399564.4,ENST00000515297.1,ENST00000506092.2,ENST00000503890.1	chr5	41000779:41000935:41004447:41004630:41004875:41005022,	41004448	41004630	41004528	41004528	Frame_Shift_Del	T	-	p.I1372fs
STAD	TCGA-R5-A7ZI-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589609	67589610	Frame_Shift_Ins	-	A	p.K458fs
STAD	TCGA-R5-A7ZI-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766233	70766233	Frame_Shift_Del	T	-	p.F312fs
STAD	TCGA-R5-A7ZI-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508009	158508009	Frame_Shift_Del	C	-	p.P1114fs
STAD	TCGA-R5-A7ZI-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485487	160485488	Frame_Shift_Ins	-	G	p.R1314fs
STAD	TCGA-R5-A7ZI-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469775	161469776	Frame_Shift_Ins	-	A	p.RK157fs
STAD	TCGA-R5-A7ZI-01	AKAP9	ENST00000394564.1	chr7	91570239:91570461:91603024:91603282:91609602:91609647,	91603025	91603282	91603085	91603085	Frame_Shift_Del	A	-	p.K51fs
STAD	TCGA-R5-A7ZI-01	ARPC1A	ENST00000262942.5,ENST00000432786.1,ENST00000432884.2,ENST00000441989.2	chr7	98946515:98946582:98951531:98951744:98955962:98956026,	98951532	98951744	98951600	98951601	Frame_Shift_Ins	-	T	p.L143fs
STAD	TCGA-R5-A7ZI-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.LK72fs
STAD	TCGA-R5-A7ZI-01	CCDC180	ENST00000529487.1,ENST00000375202.2,ENST00000494917.2,ENST00000357054.1,ENST00000395220.1	chr9	100075517:100075627:100076674:100076803:100076899:100077010,	100076675	100076803	100076708	100076709	Frame_Shift_Ins	-	T	p.F209fs
STAD	TCGA-R5-A7ZI-01	CEL	ENST00000351304.7,ENST00000372080.4	chr9	135940426:135940624:135941916:135942047:135942224:135942332,	135941917	135942047	135941982	135941982	Frame_Shift_Del	G	-	p.G206fs
STAD	TCGA-R5-A7ZI-01	BTAF1	ENST00000265990.6	chr10	93695413:93695537:93699708:93699823:93702178:93702325,	93699709	93699823	93699781	93699781	Frame_Shift_Del	A	-	p.K71fs
STAD	TCGA-R5-A7ZI-01	FADS3	ENST00000414624.2,ENST00000533676.1,ENST00000540820.1,ENST00000278829.2,ENST00000527697.1,ENST00000534223.1,ENST00000534426.1,ENST00000531956.1,ENST00000529404.1	chr11	61646217:61646319:61646783:61646981:61647512:61647623,	61646784	61646981	61646921	61646924	Frame_Shift_Del	CAAA	-	p.FD128fs
STAD	TCGA-R5-A7ZI-01	FADS3	ENST00000525588.1	chr11	61646217:61646319:61646867:61646981:61647512:61647623,	61646868	61646981	61646921	61646924	Frame_Shift_Del	CAAA	-	p.FD128fs
STAD	TCGA-R5-A7ZI-01	CTSW	ENST00000526034.1,ENST00000528419.1,ENST00000307886.3	chr11	65647672:65647757:65648877:65648991:65649645:65649800,	65648878	65648991	65648964	65648964	Frame_Shift_Del	G	-	p.G87fs
STAD	TCGA-R5-A7ZI-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068108	88068108	Frame_Shift_Del	A	-	p.F105fs
STAD	TCGA-R5-A7ZI-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.K149fs
STAD	TCGA-R5-A7ZI-01	CHPT1	ENST00000552351.1,ENST00000229266.3,ENST00000549128.1,ENST00000549872.1,ENST00000552215.1	chr12	102107867:102108015:102108281:102108423:102110505:102110590,	102108282	102108423	102108338	102108338	Frame_Shift_Del	T	-	p.F162fs
STAD	TCGA-R5-A7ZI-01	ABCB9	ENST00000540285.1,ENST00000537276.1,ENST00000546289.1,ENST00000426173.2	chr12	123419819:123419978:123424657:123424831:123428937:123429066,	123424658	123424831	123424729	123424729	Frame_Shift_Del	G	-	p.L558fs
STAD	TCGA-R5-A7ZI-01	PDS5B	ENST00000450460.1,ENST00000498550.1,ENST00000315596.10	chr13	33252971:33253066:33258014:33258160:33261270:33261422,	33258015	33258160	33258092	33258092	Frame_Shift_Del	A	-	p.K380fs
STAD	TCGA-R5-A7ZI-01	PHF11	ENST00000378319.3,ENST00000496623.1	chr13	50071248:50071353:50080770:50080892:50087194:50087302,50070535:50070618:50080770:50080892:50087194:50087302,50070151:50070231:50080770:50080892:50087194:50087302,	50080771	50080892	50080797	50080798	Frame_Shift_Ins	-	A	p.K2fs
STAD	TCGA-R5-A7ZI-01	ACSM3	ENST00000562251.1,ENST00000289416.5,ENST00000567387.1,ENST00000450120.2	chr16	20803557:20803657:20807691:20807811:20808207:20808251,	20807692	20807811	20807776	20807776	Frame_Shift_Del	A	-	p.K548fs
STAD	TCGA-R5-A7ZI-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875737	4875738	Frame_Shift_Ins	-	G	p.R865fs
STAD	TCGA-R5-A7ZI-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452519	58452519	Frame_Shift_Del	T	-	p.N1024fs
STAD	TCGA-R5-A7ZI-01	WDR13	ENST00000471334.1,ENST00000376729.5,ENST00000218056.5	chrX	48456345:48456425:48457104:48457345:48457740:48457850,	48457105	48457345	48457201	48457201	Frame_Shift_Del	C	-	p.H46fs
STAD	TCGA-R5-A7ZI-01	WDR13	ENST00000498631.1,ENST00000497756.2,ENST00000486125.1	chrX	48456345:48456425:48457138:48457345:48457740:48457850,	48457139	48457345	48457201	48457201	Frame_Shift_Del	C	-	p.H46fs
STAD	TCGA-R5-A7ZI-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.K109fs
STAD	TCGA-R5-A804-01	DNAH5	ENST00000265104.4	chr5	13766084:13766288:13769068:13769245:13769609:13769724,	13769069	13769245	13769135	13769135	Frame_Shift_Del	T	-	p.K3277fs
STAD	TCGA-RD-A7BS-01	CNTNAP3B	ENST00000377561.2,ENST00000377564.3,ENST00000341990.4	chr9	43828077:43828221:43844143:43844315:43849744:43849851,	43844144	43844315	43844265	43844265	Frame_Shift_Del	G	-	p.A533fs
STAD	TCGA-RD-A7BT-01	SIPA1L1	ENST00000555066.1	chr14	72090764:72090953:72117006:72117226:72125049:72125153,	72117007	72117226	72117055	72117055	Frame_Shift_Del	A	-	p.N608fs
STAD	TCGA-RD-A7BT-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72090764:72090953:72117051:72117226:72125049:72125153,	72117052	72117226	72117055	72117055	Frame_Shift_Del	A	-	p.N608fs
STAD	TCGA-RD-A7BW-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018736	1018742	Frame_Shift_Del	CGTTGTT	-	p.GTT1353fs
STAD	TCGA-RD-A7C1-01	MGAT5	ENST00000281923.2,ENST00000409645.1	chr2	135011832:135012215:135027956:135028121:135075099:135075176,	135027957	135028121	135027982	135027985	Frame_Shift_Del	ATTA	-	p.LL89fs
STAD	TCGA-RD-A7C1-01	PMFBP1	ENST00000237353.10,ENST00000355636.6,ENST00000537465.1,ENST00000379073.5	chr16	72157444:72157548:72158665:72158833:72159136:72159304,	72158666	72158833	72158673	72158673	Frame_Shift_Del	T	-	p.D866fs
STAD	TCGA-RD-A8MV-01	OCRL	ENST00000486673.1,ENST00000357121.5,ENST00000371113.4	chrX	128691301:128691412:128691837:128691927:128692609:128692730,	128691838	128691927	128691919	128691919	Frame_Shift_Del	T	-	p.V144fs
STAD	TCGA-RD-A8MW-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717326	73717327	Frame_Shift_Ins	-	G	p.G2746fs
STAD	TCGA-RD-A8N1-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320707	46320708	Frame_Shift_Del	TC	-	p.E611fs
STAD	TCGA-RD-A8N2-01	COL20A1	ENST00000479501.1,ENST00000435874.1,ENST00000326996.6	chr20	61924575:61924627:61926449:61926541:61929261:61929372,	61926450	61926541	61926467	61926467	Frame_Shift_Del	C	-	p.S3fs
STAD	TCGA-RD-A8N4-01	BCAS3	ENST00000588569.1,ENST00000589222.1	chr17	59457866:59457932:59465978:59466069:59469337:59469486,	59465979	59466069	59465991	59465992	Frame_Shift_Ins	-	A	p.E891fs
STAD	TCGA-RD-A8N9-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7573926:7574033:7576852:7576926:7577018:7577155,	7576853	7576926	7576919	7576919	Frame_Shift_Del	G	-	p.P309fs
STAD	TCGA-SW-A7EA-01	KMO	ENST00000366555.5,ENST00000366559.4,ENST00000366558.3	chr1	241753352:241753415:241753505:241753565:241755254:241755451,	241753506	241753565	241753557	241753558	Frame_Shift_Ins	-	A	p.K418fs
STAD	TCGA-SW-A7EA-01	RMDN2	ENST00000407257.1,ENST00000234195.3	chr2	38177653:38177738:38178375:38179344:38201182:38201357,	38178376	38179344	38178783	38178783	Frame_Shift_Del	T	-	p.I142fs
STAD	TCGA-SW-A7EA-01	R3HDM1	ENST00000409478.1,ENST00000409606.1,ENST00000445855.1,ENST00000410054.1,ENST00000429703.2,ENST00000264160.4,ENST00000329971.3	chr2	136432967:136433056:136437742:136437894:136467002:136467106,	136437743	136437894	136437772	136437773	Frame_Shift_Ins	-	C	p.IP744fs
STAD	TCGA-SW-A7EA-01	LRP1B	ENST00000389484.3,ENST00000437977.1,ENST00000442974.1	chr2	141027810:141027915:141031992:141032167:141055376:141055538,	141031993	141032167	141032033	141032034	Frame_Shift_Ins	-	C	p.L4368fs
STAD	TCGA-SW-A7EA-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.K1290fs
STAD	TCGA-SW-A7EA-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418807	122418807	Frame_Shift_Del	A	-	p.E469fs
STAD	TCGA-SW-A7EA-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319188	54319189	Frame_Shift_Del	AG	-	p.R463fs
STAD	TCGA-SW-A7EA-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319188	54319189	Frame_Shift_Del	AG	-	p.R463fs
STAD	TCGA-SW-A7EA-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466604	65466604	Frame_Shift_Del	A	-	p.E438fs
STAD	TCGA-SW-A7EA-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334907	Frame_Shift_Del	T	-	p.K923fs
STAD	TCGA-SW-A7EA-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
STAD	TCGA-SW-A7EA-01	NDUFAF6	ENST00000518608.1	chr8	96044222:96044326:96047681:96047804:96053797:96053854,96044222:96044322:96047681:96047804:96053797:96053854,96037295:96037433:96047681:96047804:96053797:96053854,	96047682	96047804	96047735	96047736	Frame_Shift_Ins	-	A	p.*K25fs
STAD	TCGA-SW-A7EA-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065456	145065457	Frame_Shift_Ins	-	G	p.R22fs
STAD	TCGA-SW-A7EA-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1262090	1262091	Frame_Shift_Ins	-	C	p.P1330fs
STAD	TCGA-SW-A7EA-01	TRIM3	ENST00000345851.3,ENST00000359518.3,ENST00000537602.1,ENST00000525074.1,ENST00000536344.1	chr11	6472121:6472290:6472500:6472668:6477301:6477374,	6472501	6472668	6472535	6472536	Frame_Shift_Ins	-	A	p.G556fs
STAD	TCGA-SW-A7EA-01	CEP57	ENST00000325486.5,ENST00000535224.1	chr11	95551990:95552068:95555034:95555142:95555662:95555740,95551990:95552068:95555034:95555142:95560949:95561065,	95555035	95555142	95555113	95555113	Frame_Shift_Del	A	-	p.K263fs
STAD	TCGA-SW-A7EA-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108043205	108043205	Frame_Shift_Del	A	-	p.S836fs
STAD	TCGA-SW-A7EA-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102993	61102994	Frame_Shift_Ins	-	T	p.F452fs
STAD	TCGA-SW-A7EA-01	JDP2	ENST00000437176.1,ENST00000559060.1	chr14	75898836:75899039:75904600:75904824:75928128:75928233,75894919:75894955:75904600:75904824:75928128:75928233,	75904601	75904824	75904683	75904683	Frame_Shift_Del	C	-	p.G20fs
STAD	TCGA-SW-A7EA-01	SNUPN	ENST00000371091.5,ENST00000308588.5,ENST00000564644.1,ENST00000564675.1,ENST00000568078.1,ENST00000567134.1	chr15	75893478:75893559:75897490:75897568:75899556:75899654,	75897491	75897568	75897504	75897505	Frame_Shift_Ins	-	T	p.Q264fs
STAD	TCGA-SW-A7EA-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68264112:68264218:68264291:68264457:68264743:68264930,	68264292	68264457	68264452	68264452	Frame_Shift_Del	G	-	p.P635fs
STAD	TCGA-SW-A7EA-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89351056	89351057	Frame_Shift_Ins	-	T	p.*632fs
STAD	TCGA-SW-A7EA-01	NCOR1	ENST00000458113.2	chr17	15968798:15969008:15971207:15971435:15973478:15973612,15968798:15969005:15971207:15971435:15973478:15973612,	15971208	15971435	15971253	15971254	Frame_Shift_Ins	-	G	p.A1566fs
STAD	TCGA-SW-A7EA-01	GPRC5C	ENST00000392627.1,ENST00000392628.2	chr17	72428254:72428280:72435883:72436966:72439956:72440051,	72435884	72436966	72436022	72436023	Frame_Shift_Ins	-	C	p.T81fs
STAD	TCGA-SW-A7EA-01	GPRC5C	ENST00000481232.1	chr17	72428254:72428280:72435883:72436185:72439956:72440051,	72435884	72436185	72436022	72436023	Frame_Shift_Ins	-	C	p.T81fs
STAD	TCGA-SW-A7EA-01	ENTPD6	ENST00000360031.2,ENST00000435520.1	chr20	25176474:25176503:25187714:25188033:25190484:25190561,25187157:25187226:25187714:25188033:25190484:25190561,	25187715	25188033	25187923	25187924	Frame_Shift_Ins	-	C	p.T88fs
STAD	TCGA-SW-A7EA-01	ENTPD6	ENST00000433259.2,ENST00000376652.4,ENST00000425813.1	chr20	25176474:25176503:25187711:25188033:25190484:25190561,25187157:25187226:25187711:25188033:25190484:25190561,	25187712	25188033	25187923	25187924	Frame_Shift_Ins	-	C	p.T88fs
STAD	TCGA-SW-A7EA-01	ZBTB21	ENST00000398505.3	chr21	43411514:43411998:43412601:43414217:43423005:43423070,	43412602	43414217	43413803	43413803	Frame_Shift_Del	T	-	p.K134fs
STAD	TCGA-SW-A7EA-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622164	24622165	Frame_Shift_Ins	-	C	p.P370fs
STAD	TCGA-SW-A7EA-01	DCX	ENST00000338081.3,ENST00000371993.2,ENST00000488120.1	chrX	110543835:110544971:110555869:110555964:110574131:110574269,110543835:110544971:110555869:110555964:110574146:110574269,	110555870	110555964	110555930	110555930	Frame_Shift_Del	G	-	p.P403fs
STAD	TCGA-VQ-A8DL-01	ZMYND12	ENST00000461083.1	chr1	42902091:42902214:42905526:42905696:42921558:42921682,	42905527	42905696	42905657	42905658	Frame_Shift_Ins	-	G	p.S155fs
STAD	TCGA-VQ-A8DL-01	PIFO	ENST00000369738.4,ENST00000484512.1	chr1	111889531:111889671:111890295:111890394:111891137:111891170,	111890296	111890394	111890366	111890367	Frame_Shift_Ins	-	AGCT	p.S77fs
STAD	TCGA-VQ-A8DL-01	SP100	ENST00000409824.1,ENST00000432979.1,ENST00000264052.5,ENST00000340126.4,ENST00000409897.1,ENST00000409341.1,ENST00000427101.2,ENST00000341950.4,ENST00000409112.1	chr2	231307651:231307814:231308892:231309061:231311533:231311617,	231308893	231309061	231308929	231308930	Frame_Shift_Ins	-	AG	p.E103fs
STAD	TCGA-VQ-A8DL-01	CD47	ENST00000355354.7,ENST00000361309.5	chr3	107777183:107777276:107778298:107778391:107779591:107779699,	107778299	107778391	107778384	107778385	Frame_Shift_Del	AT	-	p.Y202fs
STAD	TCGA-VQ-A8DL-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73931865	73931866	Frame_Shift_Ins	-	AGTT	p.P149fs
STAD	TCGA-VQ-A8DL-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73931865	73931866	Frame_Shift_Ins	-	AGTT	p.P149fs
STAD	TCGA-VQ-A8DL-01	IRF4	ENST00000493114.1	chr6	391767:391809:393097:393368:394820:395007,	393098	393368	393302	393302	Frame_Shift_Del	C	-	p.F50fs
STAD	TCGA-VQ-A8DL-01	PEX3	ENST00000367591.4	chr6	143772116:143772252:143780221:143780353:143784052:143784134,	143780222	143780353	143780224	143780225	Frame_Shift_Ins	-	TATA	p.I26fs
STAD	TCGA-VQ-A8DL-01	ERI1	ENST00000519292.1	chr8	8877922:8877974:8887301:8887591:8890058:8890848,	8887302	8887591	8887408	8887409	Frame_Shift_Ins	-	AGCA	p.S305fs
STAD	TCGA-VQ-A8DL-01	ADAM28	ENST00000437154.2,ENST00000265769.4	chr8	24170900:24171093:24177748:24177820:24178730:24178802,	24177749	24177820	24177792	24177799	Frame_Shift_Del	AATATTAT	-	p.EYY207fs
STAD	TCGA-VQ-A8DL-01	LRRK2	ENST00000298910.7,ENST00000343742.2	chr12	40618875:40619084:40619356:40619442:40626075:40626185,	40619357	40619442	40619415	40619416	Frame_Shift_Ins	-	G	p.Y71fs
STAD	TCGA-VQ-A8DL-01	JAG2	ENST00000347004.2,ENST00000553051.1,ENST00000331782.3	chr14	105618497:105618628:105621898:105621959:105622074:105622326,	105621899	105621959	105621917	105621927	Frame_Shift_Del	GTGCATCCCCC	-	p.GGCT254fs
STAD	TCGA-VQ-A8DL-01	MAPK6	ENST00000261845.5	chr15	52311434:52311573:52338026:52339212:52342189:52342334,	52338027	52339212	52339019	52339020	Frame_Shift_Ins	-	G	p.R121fs
STAD	TCGA-VQ-A8DL-01	VEZF1	ENST00000581208.1	chr17	56059233:56059297:56060059:56060754:56065439:56065513,	56060060	56060754	56060137	56060140	Frame_Shift_Del	CATC	-	p.RM207fs
STAD	TCGA-VQ-A8DL-01	EXOC7	ENST00000442951.1	chr17	74097351:74097457:74097759:74097944:74099441:74099507,74097351:74097457:74097759:74097944:74099164:74099307,	74097760	74097944	74097940	74097941	Frame_Shift_Ins	-	AC	p.Y44fs
STAD	TCGA-VQ-A8DL-01	SETBP1	ENST00000282030.5	chr18	42281139:42281797:42449194:42449248:42529845:42533305,	42449195	42449248	42449206	42449207	Frame_Shift_Ins	-	AGTG	p.*167fs
STAD	TCGA-VQ-A8DL-01	FBXO27	ENST00000509137.2,ENST00000292853.4,ENST00000595166.1,ENST00000600828.1	chr19	39517509:39517645:39521668:39521764:39521848:39521957,	39521669	39521764	39521724	39521725	Frame_Shift_Ins	-	CT	p.S173fs
STAD	TCGA-VQ-A8DL-01	SEC23B	ENST00000422877.1,ENST00000377475.3,ENST00000377465.1,ENST00000336714.3,ENST00000262544.2	chr20	18523011:18523046:18523662:18523816:18526599:18526677,	18523663	18523816	18523712	18523724	Frame_Shift_Del	CAGGAGGCTGCGG	-	p.QEAAA521fs
STAD	TCGA-VQ-A8DL-01	ATP9A	ENST00000402822.1,ENST00000338821.5,ENST00000311637.5	chr20	50329504:50329613:50342357:50342471:50346372:50346517,	50342358	50342471	50342378	50342379	Frame_Shift_Del	AG	-	p.LY102fs
STAD	TCGA-VQ-A8DT-01	RGS7	ENST00000440928.1,ENST00000366562.4,ENST00000407727.1,ENST00000366563.1,ENST00000348120.2,ENST00000366565.1,ENST00000331110.7,ENST00000366564.1,ENST00000446183.2,ENST00000401882.1	chr1	240969439:240969626:240975217:240975343:240976917:240977028,	240975218	240975343	240975304	240975304	Frame_Shift_Del	A	-	p.F332fs
STAD	TCGA-VQ-A8DT-01	PLD5	ENST00000442594.2,ENST00000366545.4	chr1	242428663:242428750:242451663:242451832:242511407:242511544,242428663:242428750:242451663:242451832:242511400:242511544,	242451664	242451832	242451704	242451705	Frame_Shift_Ins	-	A	p.P60fs
STAD	TCGA-VQ-A8DT-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492791	56492792	Frame_Shift_Del	CT	-	p.RV49fs
STAD	TCGA-VQ-A8DU-01	QRSL1	ENST00000369044.1	chr6	107077488:107077580:107088223:107088383:107088697:107088737,	107088224	107088383	107088346	107088346	Frame_Shift_Del	A	-	p.L49fs
STAD	TCGA-VQ-A8DV-01	ADTRP	ENST00000379415.2	chr6	11768481:11768616:11778839:11779199:11803247:11803342,	11778840	11779199	11778855	11778856	Frame_Shift_Ins	-	AT	p.N46fs
STAD	TCGA-VQ-A8DV-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016693	1016693	Frame_Shift_Del	G	-	p.A2036fs
STAD	TCGA-VQ-A8DZ-01	FAM208B	ENST00000328090.5	chr10	5784059:5784489:5788141:5791990:5798575:5798701,	5788142	5791990	5790928	5790929	Frame_Shift_Ins	-	TA	p.Y1849fs
STAD	TCGA-VQ-A8DZ-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1015942	1015943	Frame_Shift_Del	AC	-	p.VS2286fs
STAD	TCGA-VQ-A8DZ-01	TXNRD1	ENST00000524698.1,ENST00000378070.4,ENST00000429002.2,ENST00000525566.1,ENST00000540716.1,ENST00000529546.1,ENST00000503506.2,ENST00000526390.1,ENST00000388854.3,ENST00000397736.2,ENST00000427956.1,ENST00000354940.6,ENST00000527688.1,ENST00000526691.1,ENST00000542918.1,ENST00000526950.1	chr12	104725311:104725419:104728014:104728110:104732916:104733051,	104728015	104728110	104728030	104728030	Frame_Shift_Del	T	-	p.F458fs
STAD	TCGA-VQ-A8E2-01	TMEM38B	ENST00000374688.1,ENST00000374692.3,ENST00000435034.1	chr9	108467955:108468034:108483817:108484002:108484814:108484902,	108483818	108484002	108483827	108483828	Frame_Shift_Ins	-	T	p.TF39fs
STAD	TCGA-VQ-A8E2-01	SLC7A6	ENST00000219343.6,ENST00000566454.1	chr16	68321662:68321774:68324298:68324443:68325111:68325235,	68324299	68324443	68324429	68324430	Frame_Shift_Ins	-	A	p.IK260fs
STAD	TCGA-VQ-A8E7-01	MTMR12	ENST00000382142.3,ENST00000505419.1,ENST00000280285.5,ENST00000264934.5	chr5	32270950:32271053:32271938:32272011:32274085:32274228,	32271939	32272011	32271987	32271991	Frame_Shift_Del	TAACC	-	p.KVI102fs
STAD	TCGA-VQ-A8E7-01	PPIB	ENST00000561048.1	chr15	64452311:64452396:64454239:64454353:64455050:64455205,	64454240	64454353	64454344	64454345	Frame_Shift_Ins	-	A	p.LP48fs
STAD	TCGA-VQ-A8P2-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
STAD	TCGA-VQ-A8P2-01	AADACL3	ENST00000359318.5	chr1	12776117:12776347:12779476:12779693:12780884:12780948,	12779477	12779693	12779672	12779672	Frame_Shift_Del	G	-	p.G66fs
STAD	TCGA-VQ-A8P2-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27877504	27877505	Frame_Shift_Ins	-	G	p.A375fs
STAD	TCGA-VQ-A8P2-01	TMEM39B	ENST00000476968.1,ENST00000472503.1,ENST00000427288.1,ENST00000336294.5,ENST00000498613.1,ENST00000468135.1,ENST00000487305.1,ENST00000466321.1	chr1	32541267:32541423:32542764:32542919:32557275:32557345,32542363:32542447:32542764:32542919:32557275:32557345,	32542765	32542919	32542775	32542775	Frame_Shift_Del	G	-	p.R34fs
STAD	TCGA-VQ-A8P2-01	ST3GAL3	ENST00000372375.2,ENST00000372372.2,ENST00000372368.2,ENST00000262915.3,ENST00000361746.4,ENST00000351035.3	chr1	44280562:44280605:44290402:44290564:44303890:44303918,	44290403	44290564	44290469	44290470	Frame_Shift_Ins	-	A	p.PK107fs
STAD	TCGA-VQ-A8P2-01	CMPK1	ENST00000371873.5	chr1	47834140:47834287:47838626:47838779:47840580:47840657,	47838627	47838779	47838758	47838759	Frame_Shift_Ins	-	T	p.LF150fs
STAD	TCGA-VQ-A8P2-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4,ENST00000460500.1	chr1	85128137:85128213:85130099:85130235:85131804:85131915,	85130100	85130235	85130227	85130227	Frame_Shift_Del	T	-	p.K155fs
STAD	TCGA-VQ-A8P2-01	SYDE2	ENST00000341460.5	chr1	85643828:85643955:85647780:85648883:85655739:85655892,	85647781	85648883	85648801	85648801	Frame_Shift_Del	T	-	p.K508fs
STAD	TCGA-VQ-A8P2-01	CLCA4	ENST00000370563.3	chr1	87025893:87026041:87029343:87029452:87031484:87031703,87025893:87026041:87029343:87029452:87030956:87031134,	87029344	87029452	87029432	87029432	Frame_Shift_Del	A	-	p.S179fs
STAD	TCGA-VQ-A8P2-01	BCAN	ENST00000329117.5	chr1	156622606:156622684:156626073:156626181:156626729:156626832,	156626074	156626181	156626160	156626160	Frame_Shift_Del	G	-	p.G678fs
STAD	TCGA-VQ-A8P2-01	RGS4	ENST00000421743.2,ENST00000533019.1,ENST00000367906.3,ENST00000527809.1,ENST00000367909.6,ENST00000528938.1	chr1	163042594:163042656:163043245:163043412:163044110:163046381,	163043246	163043412	163043367	163043368	Frame_Shift_Ins	-	A	p.AK208fs
STAD	TCGA-VQ-A8P2-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1	chr2	10711998:10712316:10717761:10717864:10729168:10729416,	10717762	10717864	10717826	10717826	Frame_Shift_Del	T	-	p.N578fs
STAD	TCGA-VQ-A8P2-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305819	27305819	Frame_Shift_Del	G	-	p.L460fs
STAD	TCGA-VQ-A8P2-01	DNAH6	ENST00000398278.2,ENST00000389394.3,ENST00000237449.6,ENST00000494025.1,ENST00000476689.1	chr2	84800590:84800711:84804380:84804532:84806650:84806803,	84804381	84804532	84804389	84804389	Frame_Shift_Del	T	-	p.F646fs
STAD	TCGA-VQ-A8P2-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152320540	152320541	Frame_Shift_Ins	-	A	p.KK1502fs
STAD	TCGA-VQ-A8P2-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168102744	168102745	Frame_Shift_Ins	-	A	p.SK1614fs
STAD	TCGA-VQ-A8P2-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186670036	186670037	Frame_Shift_Ins	-	A	p.K5424fs
STAD	TCGA-VQ-A8P2-01	NAB1	ENST00000409581.1,ENST00000357215.5	chr2	191513995:191514086:191523883:191524721:191535051:191535185,	191523884	191524721	191524046	191524047	Frame_Shift_Ins	-	T	p.DF48fs
STAD	TCGA-VQ-A8P2-01	SPAG16	ENST00000272898.7,ENST00000374309.3,ENST00000440779.1,ENST00000331683.5,ENST00000413312.1,ENST00000447990.1,ENST00000406979.2	chr2	214181942:214182080:214204886:214204994:214228799:214228869,214181942:214182080:214204886:214204994:214215251:214215369,	214204887	214204994	214204963	214204964	Frame_Shift_Ins	-	A	p.K174fs
STAD	TCGA-VQ-A8P2-01	CCL20	ENST00000473642.1,ENST00000358813.4,ENST00000409189.3	chr2	228680172:228680284:228681022:228681100:228681777:228682179,	228681023	228681100	228681061	228681062	Frame_Shift_Ins	-	A	p.Q76fs
STAD	TCGA-VQ-A8P2-01	METTL6	ENST00000383790.3,ENST00000383789.5	chr3	15466461:15466596:15467793:15468142:15468908:15469025,	15467794	15468142	15467873	15467874	Frame_Shift_Ins	-	A	p.Q49fs
STAD	TCGA-VQ-A8P2-01	TRPC1	ENST00000460401.1	chr3	142443406:142443573:142467099:142467302:142496473:142496500,	142467100	142467302	142467276	142467277	Frame_Shift_Ins	-	A	p.KK168fs
STAD	TCGA-VQ-A8P2-01	GRK4	ENST00000505271.1	chr4	3029638:3029728:3030927:3031136:3042298:3042454,	3030928	3031136	3031025	3031026	Frame_Shift_Ins	-	A	p.LK386fs
STAD	TCGA-VQ-A8P2-01	GUF1	ENST00000506793.1,ENST00000281543.5	chr4	44691859:44691992:44692733:44692877:44693682:44693816,	44692734	44692877	44692743	44692744	Frame_Shift_Ins	-	A	p.K449fs
STAD	TCGA-VQ-A8P2-01	AFF1	ENST00000395146.4,ENST00000544085.1	chr4	88052944:88053016:88053422:88053560:88055625:88055846,88052944:88053016:88053422:88053560:88055622:88055846,	88053423	88053560	88053466	88053466	Frame_Shift_Del	A	-	p.K1067fs
STAD	TCGA-VQ-A8P2-01	KIAA1109	ENST00000264501.4,ENST00000438707.1,ENST00000388738.3,ENST00000306802.4	chr4	123264564:123264765:123265536:123265716:123267777:123267915,	123265537	123265716	123265650	123265650	Frame_Shift_Del	T	-	p.F4224fs
STAD	TCGA-VQ-A8P2-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705894	35705894	Frame_Shift_Del	A	-	p.A878fs
STAD	TCGA-VQ-A8P2-01	GFM2	ENST00000427854.2,ENST00000296805.3,ENST00000509430.1	chr5	74034142:74034242:74034326:74034467:74035813:74035956,	74034327	74034467	74034392	74034392	Frame_Shift_Del	A	-	p.F385fs
STAD	TCGA-VQ-A8P2-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000512607.2,ENST00000452673.2	chr5	179147404:179147561:179149804:179150020:179150660:179150780,	179149805	179150020	179149920	179149920	Frame_Shift_Del	T	-	p.I433fs
STAD	TCGA-VQ-A8P2-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
STAD	TCGA-VQ-A8P2-01	FAXC	ENST00000389677.5,ENST00000480148.1	chr6	99771358:99771543:99781226:99781423:99790773:99790810,	99781227	99781423	99781357	99781358	Frame_Shift_Ins	-	T	p.N156fs
STAD	TCGA-VQ-A8P2-01	REV3L	ENST00000470871.1,ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111708967:111709116:111709203:111709288:111710308:111710413,	111709204	111709288	111709250	111709251	Frame_Shift_Ins	-	T	p.NS222fs
STAD	TCGA-VQ-A8P2-01	ERICH1	ENST00000262109.7	chr8	618597:618792:623288:624047:642477:642612,	623289	624047	623864	623865	Frame_Shift_Ins	-	T	p.E163fs
STAD	TCGA-VQ-A8P2-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.LK72fs
STAD	TCGA-VQ-A8P2-01	LYN	ENST00000520050.1,ENST00000520220.2,ENST00000519728.1	chr8	56860176:56860282:56863017:56863116:56863239:56863307,	56863018	56863116	56863054	56863054	Frame_Shift_Del	A	-	p.T86fs
STAD	TCGA-VQ-A8P2-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680349	18680350	Frame_Shift_Ins	-	G	p.WG392fs
STAD	TCGA-VQ-A8P2-01	CAAP1	ENST00000333916.5,ENST00000517946.1,ENST00000535437.1	chr9	26884807:26884883:26886101:26886186:26887310:26887476,	26886102	26886186	26886159	26886160	Frame_Shift_Ins	-	T	p.NM177fs
STAD	TCGA-VQ-A8P2-01	MCM10	ENST00000378714.3,ENST00000378694.1,ENST00000484800.2	chr10	13243420:13243534:13246218:13246364:13251090:13251133,	13246219	13246364	13246300	13246300	Frame_Shift_Del	T	-	p.F813fs
STAD	TCGA-VQ-A8P2-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560464	75560464	Frame_Shift_Del	C	-	p.S1690fs
STAD	TCGA-VQ-A8P2-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Frame_Shift_Del	A	-	p.K158fs
STAD	TCGA-VQ-A8P2-01	SCUBE2	ENST00000309263.3,ENST00000450649.2,ENST00000457346.2	chr11	9052304:9052472:9055172:9055343:9068902:9069109,	9055173	9055343	9055268	9055268	Frame_Shift_Del	T	-	p.N693fs
STAD	TCGA-VQ-A8P2-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12923486:12923660:12946458:12946599:12951720:12951873,	12946459	12946599	12946496	12946497	Frame_Shift_Ins	-	T	p.V289fs
STAD	TCGA-VQ-A8P2-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
STAD	TCGA-VQ-A8P2-01	DNAJB13	ENST00000339764.1	chr11	73670538:73670700:73675922:73676080:73677182:73677296,	73675923	73676080	73676057	73676057	Frame_Shift_Del	A	-	p.K158fs
STAD	TCGA-VQ-A8P2-01	ME3	ENST00000530520.1,ENST00000359636.2,ENST00000543262.1,ENST00000526504.1,ENST00000530335.1,ENST00000524826.1	chr11	86267606:86267744:86270731:86270865:86382803:86382864,	86270732	86270865	86270840	86270841	Frame_Shift_Ins	-	T	p.A70fs
STAD	TCGA-VQ-A8P2-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713870	40713870	Frame_Shift_Del	A	-	p.S1636fs
STAD	TCGA-VQ-A8P2-01	MDM1	ENST00000303145.7,ENST00000541686.1,ENST00000545724.1	chr12	68719220:68719355:68720436:68720801:68724886:68725001,	68720437	68720801	68720768	68720769	Frame_Shift_Ins	-	T	p.K56fs
STAD	TCGA-VQ-A8P2-01	NCOR2	ENST00000356219.3	chr12	124846671:124846843:124848224:124848345:124856567:124857156,124846671:124846840:124848224:124848345:124856567:124857156,	124848225	124848345	124848228	124848228	Frame_Shift_Del	G	-	p.P975fs
STAD	TCGA-VQ-A8P2-01	ARHGEF40	ENST00000556399.1,ENST00000298693.3,ENST00000298694.4,ENST00000553709.1	chr14	21546335:21546431:21546531:21546647:21547042:21547169,	21546532	21546647	21546604	21546604	Frame_Shift_Del	G	-	p.G736fs
STAD	TCGA-VQ-A8P2-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554712.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53360093:53360145:53385840:53386074:53417129:53417286,	53385841	53386074	53386064	53386064	Frame_Shift_Del	T	-	p.K56fs
STAD	TCGA-VQ-A8P2-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728644	100728644	Frame_Shift_Del	A	-	p.E228fs
STAD	TCGA-VQ-A8P2-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4950964:4951090:4952406:4952527:4953886:4954041,	4952407	4952527	4952485	4952485	Frame_Shift_Del	T	-	p.K120fs
STAD	TCGA-VQ-A8P2-01	NUBP1	ENST00000573663.1	chr16	10855613:10855716:10861805:10861889:10862903:10863170,10858880:10859001:10861805:10861889:10862903:10863170,	10861806	10861889	10861830	10861831	Frame_Shift_Ins	-	T	p.F282fs
STAD	TCGA-VQ-A8P2-01	BFAR	ENST00000566710.1,ENST00000261658.2,ENST00000426842.2	chr16	14738144:14738466:14748922:14749067:14755748:14755922,14743660:14743830:14748922:14749067:14755748:14755922,	14748923	14749067	14749041	14749041	Frame_Shift_Del	C	-	p.P254fs
STAD	TCGA-VQ-A8P2-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339834	22339834	Frame_Shift_Del	C	-	p.P625fs
STAD	TCGA-VQ-A8P2-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
STAD	TCGA-VQ-A8P2-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
STAD	TCGA-VQ-A8P2-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289854	68289855	Frame_Shift_Ins	-	G	p.G230fs
STAD	TCGA-VQ-A8P2-01	DERL2	ENST00000571971.1,ENST00000570848.1,ENST00000575605.1	chr17	5383706:5383902:5384615:5384709:5386128:5386199,5384420:5384462:5384615:5384709:5386128:5386199,	5384616	5384709	5384634	5384634	Frame_Shift_Del	A	-	p.F103fs
STAD	TCGA-VQ-A8P2-01	GID4	ENST00000268719.4,ENST00000459843.1	chr17	17957461:17957548:17962181:17962283:17965158:17965289,	17962182	17962283	17962195	17962196	Frame_Shift_Ins	-	T	p.V207fs
STAD	TCGA-VQ-A8P2-01	OSBPL7	ENST00000392507.3,ENST00000579728.1,ENST00000583167.1,ENST00000007414.3	chr17	45887959:45888038:45888137:45888201:45890631:45890769,	45888138	45888201	45888184	45888185	Frame_Shift_Ins	-	G	p.H585fs
STAD	TCGA-VQ-A8P2-01	TBX2	ENST00000240328.3,ENST00000419047.1	chr17	59481966:59482130:59482562:59483197:59485414:59486786,	59482563	59483197	59482884	59482884	Frame_Shift_Del	C	-	p.S458fs
STAD	TCGA-VQ-A8P2-01	MED13	ENST00000397786.2	chr17	60043822:60044012:60045395:60045619:60050087:60050249,	60045396	60045619	60045420	60045420	Frame_Shift_Del	A	-	p.F1389fs
STAD	TCGA-VQ-A8P2-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223357	71223357	Frame_Shift_Del	G	-	p.Q90fs
STAD	TCGA-VQ-A8P2-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256062	9256062	Frame_Shift_Del	A	-	p.K911fs
STAD	TCGA-VQ-A8P2-01	RALBP1	ENST00000383432.3	chr18	9475667:9475689:9512988:9513287:9516842:9517156,	9512989	9513287	9513253	9513254	Frame_Shift_Ins	-	A	p.KK70fs
STAD	TCGA-VQ-A8P2-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154690	19154691	Frame_Shift_Ins	-	T	p.NR38fs
STAD	TCGA-VQ-A8P2-01	CTIF	ENST00000256413.3,ENST00000591387.1,ENST00000382998.4,ENST00000587752.1,ENST00000588345.1	chr18	46145908:46146116:46162984:46163056:46190122:46190182,	46162985	46163056	46163042	46163043	Frame_Shift_Ins	-	C	p.P80fs
STAD	TCGA-VQ-A8P2-01	CTDP1	ENST00000075430.7,ENST00000299543.7,ENST00000591598.1	chr18	77464766:77464917:77470345:77470436:77472971:77473138,	77470346	77470436	77470369	77470370	Frame_Shift_Ins	-	T	p.F266fs
STAD	TCGA-VQ-A8P2-01	CREB3L3	ENST00000602257.1,ENST00000598894.1,ENST00000595923.1,ENST00000078445.2	chr19	4164505:4164637:4168347:4168454:4170136:4170205,	4168348	4168454	4168366	4168366	Frame_Shift_Del	A	-	p.K246fs
STAD	TCGA-VQ-A8P2-01	TYROBP	ENST00000262629.4,ENST00000587837.1	chr19	36398119:36398166:36398347:36398482:36398631:36398664,	36398348	36398482	36398364	36398364	Frame_Shift_Del	C	-	p.G71fs
STAD	TCGA-VQ-A8P2-01	CCDC97	ENST00000269967.3	chr19	41822288:41822744:41825478:41825757:41826245:41826375,	41825479	41825757	41825595	41825595	Frame_Shift_Del	C	-	p.P208fs
STAD	TCGA-VQ-A8P2-01	CBLC	ENST00000341505.4,ENST00000270279.3	chr19	45296730:45296877:45297460:45297538:45303637:45303707,	45297461	45297538	45297502	45297503	Frame_Shift_Ins	-	C	p.LP442fs
STAD	TCGA-VQ-A8P2-01	PIH1D1	ENST00000596916.1,ENST00000601807.1,ENST00000596651.1,ENST00000262265.5,ENST00000596049.1,ENST00000593629.1,ENST00000598889.1,ENST00000594845.1	chr19	49949657:49949680:49949807:49949951:49950280:49950302,	49949808	49949951	49949891	49949891	Frame_Shift_Del	G	-	p.Q251fs
STAD	TCGA-VQ-A8P2-01	PIH1D1	ENST00000602226.1	chr19	49949657:49949680:49949807:49950001:49950280:49950302,	49949808	49950001	49949891	49949891	Frame_Shift_Del	G	-	p.Q251fs
STAD	TCGA-VQ-A8P2-01	PIH1D1	ENST00000597577.1	chr19	49949657:49949680:49949807:49950051:49950280:49950302,	49949808	49950051	49949891	49949891	Frame_Shift_Del	G	-	p.Q251fs
STAD	TCGA-VQ-A8P2-01	SPIB	ENST00000595883.1,ENST00000270632.7	chr19	50925729:50925802:50926079:50926294:50926861:50927012,	50926080	50926294	50926260	50926261	Frame_Shift_Ins	-	C	p.P102fs
STAD	TCGA-VQ-A8P2-01	PLCB4	ENST00000492632.1	chr20	9433993:9434109:9438060:9438136:9440281:9440457,9433993:9434109:9438060:9438136:9449217:9449319,	9438061	9438136	9438082	9438083	Frame_Shift_Ins	-	A	p.IK994fs
STAD	TCGA-VQ-A8P2-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345573	23345574	Frame_Shift_Ins	-	GA	p.R185fs
STAD	TCGA-VQ-A8P2-01	DSN1	ENST00000373750.4,ENST00000447406.1,ENST00000426836.1,ENST00000373745.3	chr20	35396371:35396445:35399275:35399596:35402064:35402123,35396371:35396445:35399275:35399596:35399827:35399876,	35399276	35399596	35399447	35399448	Frame_Shift_Ins	-	T	p.KG61fs
STAD	TCGA-VQ-A8P2-01	DSN1	ENST00000480153.1	chr20	35396371:35396445:35399275:35399876:35402064:35402123,	35399276	35399876	35399447	35399448	Frame_Shift_Ins	-	T	p.KG61fs
STAD	TCGA-VQ-A8P2-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300932	18300932	Frame_Shift_Del	G	-	p.R1499fs
STAD	TCGA-VQ-A8P2-01	MYH9	ENST00000216181.5	chr22	36715584:36715680:36716264:36716408:36716842:36716941,	36716265	36716408	36716344	36716344	Frame_Shift_Del	G	-	p.P311fs
STAD	TCGA-VQ-A8PE-01	IFT46	ENST00000530872.1,ENST00000534114.1,ENST00000264020.2	chr11	118427708:118427760:118428452:118428605:118430499:118430547,	118428453	118428605	118428468	118428469	Frame_Shift_Ins	-	CT	p.T61fs
STAD	TCGA-VQ-A8PE-01	NBEA	ENST00000379922.3,ENST00000310336.4,ENST00000379939.2,ENST00000540320.1,ENST00000400445.3,ENST00000537702.1	chr13	36220395:36220485:36223791:36223984:36225941:36226013,	36223792	36223984	36223864	36223864	Frame_Shift_Del	C	-	p.P2594fs
STAD	TCGA-VQ-A8PK-01	ST3GAL2	ENST00000393640.4,ENST00000567822.1,ENST00000342907.2	chr16	70415476:70415765:70416707:70416827:70417092:70417138,	70416708	70416827	70416799	70416799	Frame_Shift_Del	T	-	p.K263fs
STAD	TCGA-VQ-A8PM-01	RHOA	ENST00000454011.2	chr3	49405860:49405981:49412866:49413024:49449252:49449361,49399949:49400059:49412866:49413024:49449252:49449361,	49412867	49413024	49412894	49412895	Frame_Shift_Del	CA	-	p.V43fs
STAD	TCGA-VQ-A8PM-01	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110200	120110201	Frame_Shift_Ins	-	G	p.R85fs
STAD	TCGA-VQ-A91U-01	STX5	ENST00000491231.1,ENST00000294179.3	chr11	62595048:62595103:62598490:62598734:62599425:62599503,	62598491	62598734	62598585	62598585	Frame_Shift_Del	G	-	p.P44fs
STAD	TCGA-VQ-A92D-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320707	46320708	Frame_Shift_Del	TC	-	p.E611fs
STAD	TCGA-VQ-A94T-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236678	33236679	Frame_Shift_Del	TA	-	p.L633fs
STAD	TCGA-VQ-A94T-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016374	1016377	Frame_Shift_Del	AAGA	-	p.SS2142fs
STAD	TCGA-VQ-AA64-01	SOX13	ENST00000367204.1	chr1	204042731:204042839:204082042:204082262:204083448:204083560,	204082043	204082262	204082150	204082150	Frame_Shift_Del	C	-	p.A36fs
STAD	TCGA-VQ-AA64-01	LRRC25	ENST00000595840.1	chr19	18501958:18502935:18506994:18507782:18508262:18508421,	18506995	18507782	18507089	18507107	Frame_Shift_Del	GCTTGGGGGCGCTCCGGCT	-	p.SRSAPKP223fs
STAD	TCGA-VQ-AA68-01	PKHD1	ENST00000371117.3,ENST00000340994.4	chr6	51777163:51777374:51798907:51799120:51824667:51824824,	51798908	51799120	51799044	51799045	Frame_Shift_Del	CT	-	p.E1995fs
STAD	TCGA-VQ-AA68-01	ANKRD6	ENST00000522441.1,ENST00000521004.1,ENST00000369408.5,ENST00000339746.4,ENST00000518253.1,ENST00000415924.2,ENST00000520793.1,ENST00000447838.2	chr6	90334374:90334410:90337301:90337415:90338830:90338942,	90337302	90337415	90337309	90337309	Frame_Shift_Del	T	-	p.V425fs
STAD	TCGA-VQ-AA6B-01	PCF11	ENST00000530304.1,ENST00000530660.1	chr11	82868200:82868673:82872368:82872494:82874720:82874827,	82872369	82872494	82872473	82872476	Frame_Shift_Del	ATTT	-	p.TF99fs
STAD	TCGA-VQ-AA6B-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17639350	17639351	Frame_Shift_Del	CT	-	p.E601fs
STAD	TCGA-VQ-AA6F-01	TCERG1L	ENST00000368642.4	chr10	132944768:132944923:132961384:132961473:132965059:132965148,	132961385	132961473	132961463	132961463	Frame_Shift_Del	G	-	p.P319fs
STAD	TCGA-VQ-AA6G-01	ACO2	ENST00000396512.3,ENST00000216254.4	chr22	41922265:41922457:41923291:41923424:41923904:41924026,	41923292	41923424	41923353	41923359	Frame_Shift_Del	AGCATGC	-	p.EHA697fs
STAD	TCGA-VQ-AA6I-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292920	98292921	Frame_Shift_Ins	-	A	p.Y405fs
STAD	TCGA-VQ-AA6I-01	LDHA	ENST00000542179.1,ENST00000430553.2,ENST00000375710.3,ENST00000540430.1,ENST00000538451.1,ENST00000545215.1,ENST00000541097.1,ENST00000422447.3,ENST00000379412.5	chr11	18425284:18425358:18426995:18427119:18428663:18428705,	18426996	18427119	18427050	18427051	Frame_Shift_Del	TG	-	p.SV255fs
STAD	TCGA-VQ-AA6J-01	SPOCD1	ENST00000533231.1,ENST00000360482.2	chr1	32266060:32266218:32267264:32267306:32279551:32279730,	32267265	32267306	32267303	32267303	Frame_Shift_Del	C	-	p.E463fs
STAD	TCGA-VQ-AA6J-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
STAD	TCGA-VQ-AA6K-01	JAKMIP2	ENST00000265272.5,ENST00000507386.1,ENST00000333010.6	chr5	146991868:146991934:146997473:146997677:147000228:147000306,	146997474	146997677	146997615	146997615	Frame_Shift_Del	A	-	p.F735fs
STAD	TCGA-VQ-AA6K-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829081	61829082	Frame_Shift_Ins	-	T	p.K3853fs
STAD	TCGA-B7-5818-01	COL12A1	ENST00000345356.6,ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75831017:75831157:75833045:75833120:75833663:75833810,	75833046	75833120	75833113	75833113	Frame_Shift_Del	T	-	p.K2293fs
STAD	TCGA-BR-4183-01	HNF4A	ENST00000609262.1	chr20	42984444:42984493:43019097:43019319:43034697:43034872,	43019098	43019319	43019236	43019236	Frame_Shift_Del	A	-	p.K2fs
STAD	TCGA-BR-4184-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1262591	1262591	Frame_Shift_Del	C	-	p.T2187fs
STAD	TCGA-BR-4184-01	MSLN	ENST00000563941.1,ENST00000566549.1,ENST00000545450.2,ENST00000382862.3	chr16	815272:815303:815526:815617:815690:815790,	815527	815617	815527	815527	Frame_Shift_Del	C	-	p.G235fs
STAD	TCGA-BR-4184-01	RAVER1	ENST00000591969.1	chr19	10434181:10434242:10439317:10439728:10441135:10441202,	10439318	10439728	10439650	10439651	Frame_Shift_Ins	-	G	p.P158fs
STAD	TCGA-BR-4184-01	RAVER1	ENST00000293677.6	chr19	10434181:10434242:10439317:10439787:10443964:10444167,10434181:10434242:10439317:10439787:10441135:10441202,	10439318	10439787	10439650	10439651	Frame_Shift_Ins	-	G	p.P158fs
STAD	TCGA-BR-4184-01	CBS	ENST00000398158.1,ENST00000398168.1,ENST00000488526.1,ENST00000441030.1,ENST00000465732.1,ENST00000352178.5,ENST00000470912.1,ENST00000398165.3,ENST00000359624.3	chr21	44488618:44488725:44492094:44492311:44493375:44493413,	44492095	44492311	44492285	44492285	Frame_Shift_Del	G	-	p.Q7fs
STAD	TCGA-BR-4184-01	PDGFRL	ENST00000398074.3,ENST00000541323.1,ENST00000251630.6	chr8	17478559:17478711:17485995:17486289:17491582:17491722,	17485996	17486289	17486241	17486241	Frame_Shift_Del	G	-	p.G251fs
STAD	TCGA-BR-4191-01	CALCOCO1	ENST00000549613.1,ENST00000262059.4,ENST00000550804.1,ENST00000430117.2,ENST00000548263.1,ENST00000549935.2	chr12	54108381:54108477:54108983:54109109:54109576:54109831,	54108984	54109109	54108990	54108991	Frame_Shift_Del	AG	-	p.S460fs
STAD	TCGA-BR-4201-01	FNBP4	ENST00000263773.5	chr11	47741480:47741638:47744527:47744868:47745579:47745681,	47744528	47744868	47744543	47744543	Frame_Shift_Del	T	-	p.K930fs
STAD	TCGA-BR-4201-01	SUCLA2	ENST00000378654.3,ENST00000470760.1	chr13	48563016:48563116:48570977:48571158:48575315:48575376,	48570978	48571158	48570982	48570982	Frame_Shift_Del	T	-	p.K89fs
STAD	TCGA-BR-4201-01	NTN5	ENST00000600468.1	chr19	49167835:49168024:49173612:49174263:49176188:49176264,	49173613	49174263	49173894	49173894	Frame_Shift_Del	C	-	p.G117fs
STAD	TCGA-BR-4201-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000497634.2	chr9	14784367:14784632:14788916:14789112:14792740:14792799,	14788917	14789112	14789027	14789028	Frame_Shift_Del	GT	-	p.T1356fs
STAD	TCGA-BR-4201-01	FREM1	ENST00000466679.1	chr9	14784367:14784632:14788916:14789064:14792740:14792799,	14788917	14789064	14789027	14789028	Frame_Shift_Del	GT	-	p.T1356fs
STAD	TCGA-BR-4257-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
STAD	TCGA-BR-4257-01	COL3A1	ENST00000304636.3,ENST00000317840.5	chr2	189860850:189860904:189861123:189861222:189861890:189861943,	189861124	189861222	189861201	189861201	Frame_Shift_Del	C	-	p.F580fs
STAD	TCGA-BR-4257-01	HNF4A	ENST00000316673.4,ENST00000443598.2,ENST00000415691.2,ENST00000372920.1,ENST00000457232.1,ENST00000609795.1,ENST00000316099.4	chr20	43043146:43043302:43047064:43047152:43048360:43048516,	43047065	43047152	43047140	43047140	Frame_Shift_Del	G	-	p.V242fs
STAD	TCGA-BR-4257-01	MFSD8	ENST00000513559.1,ENST00000296468.3,ENST00000515130.1	chr4	128854139:128854248:128861007:128861152:128864906:128865147,128859937:128859993:128861007:128861152:128864906:128865147,128859937:128859993:128861007:128861152:128863199:128863304,	128861008	128861152	128861148	128861148	Frame_Shift_Del	A	-	p.F186fs
STAD	TCGA-BR-4280-01	ATG4C	ENST00000317868.4,ENST00000371120.3	chr1	63282245:63282479:63284675:63285006:63286809:63286880,	63284676	63285006	63284744	63284744	Frame_Shift_Del	A	-	p.K155fs
STAD	TCGA-BR-4280-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206848	89206848	Frame_Shift_Del	A	-	p.K76fs
STAD	TCGA-BR-4280-01	HDAC7	ENST00000470668.1,ENST00000548080.1,ENST00000548938.1,ENST00000380610.4,ENST00000459625.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48180367:48180486:48181494:48181592:48181827:48181947,	48181495	48181592	48181527	48181527	Frame_Shift_Del	G	-	p.P807fs
STAD	TCGA-BR-4280-01	BUB1B	ENST00000287598.6,ENST00000412359.3	chr15	40475924:40476084:40477365:40477580:40477751:40477843,	40477366	40477580	40477506	40477506	Frame_Shift_Del	C	-	p.P298fs
STAD	TCGA-BR-4280-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923753	158923753	Frame_Shift_Del	G	-	p.G1020fs
STAD	TCGA-BR-4292-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107246	14107246	Frame_Shift_Del	C	-	p.P986fs
STAD	TCGA-BR-4292-01	TIE1	ENST00000538015.1,ENST00000441333.2	chr1	43766742:43766800:43770521:43770836:43770903:43771014,	43770522	43770836	43770692	43770692	Frame_Shift_Del	C	-	p.P77fs
STAD	TCGA-BR-4292-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-4292-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459254	27459254	Frame_Shift_Del	A	-	p.K456fs
STAD	TCGA-BR-4292-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.P138fs
STAD	TCGA-BR-4292-01	DOCK9	ENST00000449796.1,ENST00000448493.2,ENST00000339416.2,ENST00000472874.1,ENST00000376460.1	chr13	99500845:99500893:99502300:99502367:99505661:99505776,	99502301	99502367	99502312	99502312	Frame_Shift_Del	A	-	p.F1335fs
STAD	TCGA-BR-4292-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265533	75265533	Frame_Shift_Del	A	-	p.E1178fs
STAD	TCGA-BR-4292-01	MEIS2	ENST00000338564.5,ENST00000219869.9,ENST00000557796.2,ENST00000607277.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000397624.3,ENST00000340545.5,ENST00000382766.2,ENST00000559561.1,ENST00000561208.1,ENST00000424352.2	chr15	37242524:37242601:37329014:37329160:37375971:37376086,	37329015	37329160	37329090	37329090	Frame_Shift_Del	T	-	p.K275fs
STAD	TCGA-BR-4292-01	TRIP4	ENST00000557834.1	chr15	64680060:64680247:64686205:64686314:64687596:64687730,	64686206	64686314	64686305	64686305	Frame_Shift_Del	A	-	p.K88fs
STAD	TCGA-BR-4292-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696624	17696624	Frame_Shift_Del	G	-	p.W121fs
STAD	TCGA-BR-4292-01	APBA3	ENST00000588984.1,ENST00000316757.3,ENST00000590064.1	chr19	3751431:3751551:3752505:3752718:3752817:3752988,	3752506	3752718	3752611	3752611	Frame_Shift_Del	C	-	p.G430fs
STAD	TCGA-BR-4292-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107038	49107038	Frame_Shift_Del	G	-	p.Q297fs
STAD	TCGA-BR-4292-01	SLC25A26	ENST00000536651.1,ENST00000336733.6,ENST00000464350.2	chr3	66286967:66287124:66293626:66293736:66312474:66312579,66271489:66271553:66293626:66293736:66312474:66312579,	66293627	66293736	66293635	66293635	Frame_Shift_Del	T	-	p.F67fs
STAD	TCGA-BR-4292-01	RREB1	ENST00000379933.3,ENST00000349384.6	chr6	7240670:7240835:7246656:7247454:7248743:7248878,7229229:7232140:7246656:7247454:7248743:7249457,	7246657	7247454	7247181	7247181	Frame_Shift_Del	C	-	p.P1445fs
STAD	TCGA-BR-4292-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-BR-4292-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409389.1,ENST00000409076.2	chr7	17854456:17854567:17855804:17855912:17861131:17861271,	17855805	17855912	17855827	17855827	Frame_Shift_Del	T	-	p.K655fs
STAD	TCGA-BR-4361-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186092082:186092352:186094735:186094926:186097209:186097423,	186094736	186094926	186094843	186094843	Frame_Shift_Del	A	-	p.K4203fs
STAD	TCGA-BR-4361-01	B4GALNT4	ENST00000534778.1	chr11	380302:380445:380670:380951:381668:381671,	380671	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
STAD	TCGA-BR-4361-01	B4GALNT4	ENST00000329962.6,ENST00000526584.1	chr11	380302:380445:380824:380951:381668:381671,	380825	380951	380921	380921	Frame_Shift_Del	G	-	p.W989fs
STAD	TCGA-BR-4361-01	CCDC88B	ENST00000463837.1,ENST00000356786.5,ENST00000479965.1,ENST00000494080.1	chr11	64121186:64121285:64121475:64121642:64122665:64122872,	64121476	64121642	64121543	64121543	Frame_Shift_Del	G	-	p.G1334fs
STAD	TCGA-BR-4361-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919175	57919175	Frame_Shift_Del	C	-	p.P142fs
STAD	TCGA-BR-4361-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.K385fs
STAD	TCGA-BR-4361-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41814295:41814448:41814962:41815158:41815442:41815552,	41814963	41815158	41815100	41815101	Frame_Shift_Ins	-	G	p.P868fs
STAD	TCGA-BR-4361-01	C16orf74	ENST00000602675.1	chr16	85741259:85741672:85743769:85743891:85768795:85768841,	85743770	85743891	85743813	85743813	Frame_Shift_Del	G	-	p.P43fs
STAD	TCGA-BR-4361-01	C16orf74	ENST00000602719.1	chr16	85741259:85741672:85743769:85743913:85768795:85768841,85723775:85724383:85743769:85743913:85768795:85768841,	85743770	85743913	85743813	85743813	Frame_Shift_Del	G	-	p.P43fs
STAD	TCGA-BR-4361-01	GALK1	ENST00000592494.1	chr17	73754671:73754680:73758784:73759520:73759977:73760086,	73758785	73759520	73759466	73759466	Frame_Shift_Del	C	-	p.G137fs
STAD	TCGA-BR-4361-01	SCAF1	ENST00000360565.3	chr19	50149971:50150087:50154124:50156962:50157605:50157688,	50154125	50156962	50155693	50155694	Frame_Shift_Ins	-	G	p.R683fs
STAD	TCGA-BR-4361-01	NLRP12	ENST00000345770.5,ENST00000391772.1,ENST00000391773.1	chr19	54308533:54308704:54310748:54310922:54312840:54314542,	54310749	54310922	54310804	54310804	Frame_Shift_Del	C	-	p.V730fs
STAD	TCGA-BR-4361-01	NLRP12	ENST00000354278.3,ENST00000535162.1,ENST00000351894.4,ENST00000391775.3,ENST00000324134.6	chr19	54308533:54308704:54310748:54310919:54312840:54314542,	54310749	54310919	54310804	54310804	Frame_Shift_Del	C	-	p.V730fs
STAD	TCGA-BR-4361-01	SPDYA	ENST00000334056.5,ENST00000379579.4	chr2	29052015:29052185:29063037:29063335:29072715:29073300,	29063038	29063335	29063182	29063182	Frame_Shift_Del	A	-	p.K233fs
STAD	TCGA-BR-4361-01	AUP1	ENST00000463900.1,ENST00000377526.3	chr2	74754067:74754186:74754374:74754490:74754597:74754717,	74754375	74754490	74754443	74754443	Frame_Shift_Del	C	-	p.A394fs
STAD	TCGA-BR-4361-01	HDLBP	ENST00000373292.4,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000483086.1,ENST00000487169.1,ENST00000310931.4	chr2	242176029:242176184:242178063:242178202:242179016:242179151,	242178064	242178202	242178074	242178075	Frame_Shift_Del	CT	-	p.E913fs
STAD	TCGA-BR-4361-01	PIK3R4	ENST00000356763.3	chr3	130452391:130452974:130454712:130454846:130463329:130464108,	130454713	130454846	130454824	130454824	Frame_Shift_Del	A	-	p.F252fs
STAD	TCGA-BR-4361-01	TOPBP1	ENST00000260810.5	chr3	133331232:133331396:133335657:133335769:133336003:133336170,	133335658	133335769	133335731	133335731	Frame_Shift_Del	T	-	p.K1266fs
STAD	TCGA-BR-4361-01	SH3BP2	ENST00000510204.1,ENST00000442312.2,ENST00000511747.1,ENST00000435136.2,ENST00000503393.2,ENST00000356331.5,ENST00000515802.1,ENST00000515737.1,ENST00000452765.2	chr4	2829332:2829401:2831219:2831874:2833297:2833406,	2831220	2831874	2831652	2831652	Frame_Shift_Del	C	-	p.S340fs
STAD	TCGA-BR-4361-01	PPID	ENST00000307720.3,ENST00000512699.1	chr4	159634270:159634412:159636448:159636555:159636713:159636820,	159636449	159636555	159636518	159636518	Frame_Shift_Del	T	-	p.N228fs
STAD	TCGA-BR-4361-01	PRRC1	ENST00000296666.8,ENST00000512635.2,ENST00000442138.2	chr5	126859151:126859274:126860222:126860612:126862309:126862470,	126860223	126860612	126860489	126860489	Frame_Shift_Del	C	-	p.P124fs
STAD	TCGA-BR-4362-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-BR-4362-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-BR-4362-01	MGAT5	ENST00000409645.1	chr2	134877752:134877862:135011832:135012215:135027956:135028121,	135011833	135012215	135012020	135012020	Frame_Shift_Del	T	-	p.F16fs
STAD	TCGA-BR-4363-01	SPEN	ENST00000442985.1,ENST00000375759.3	chr1	16235818:16235976:16237595:16237796:16242622:16242774,	16237596	16237796	16237752	16237753	Frame_Shift_Del	TT	-	p.L400fs
STAD	TCGA-BR-4363-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101117	27101117	Frame_Shift_Del	C	-	p.P1467fs
STAD	TCGA-BR-4363-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-4363-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554712.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53360093:53360145:53385840:53386074:53417129:53417286,	53385841	53386074	53386064	53386064	Frame_Shift_Del	T	-	p.K56fs
STAD	TCGA-BR-4363-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-BR-4363-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-BR-4363-01	NEB	ENST00000603639.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000413693.1,ENST00000397337.2,ENST00000409198.1,ENST00000172853.10	chr2	152362679:152362772:152363422:152363527:152364518:152364556,	152363423	152363527	152363488	152363488	Frame_Shift_Del	T	-	p.I6130fs
STAD	TCGA-BR-4363-01	USP19	ENST00000398892.3,ENST00000398896.1,ENST00000398898.2,ENST00000417901.1,ENST00000306026.5	chr3	49153156:49153371:49153479:49153595:49153712:49153784,49153156:49153377:49153479:49153595:49153712:49153784,	49153480	49153595	49153503	49153503	Frame_Shift_Del	C	-	p.G382fs
STAD	TCGA-BR-4363-01	BAP1	ENST00000460680.1	chr3	52440268:52440392:52440844:52440923:52441189:52441332,	52440845	52440923	52440912	52440912	Frame_Shift_Del	C	-	p.E198fs
STAD	TCGA-BR-4363-01	B4GALT1	ENST00000541851.1,ENST00000379731.4	chr9	33113771:33113876:33115988:33116111:33120416:33120604,	33115989	33116111	33115994	33115994	Frame_Shift_Del	A	-	p.F318fs
STAD	TCGA-BR-4368-01	BCL2L12	ENST00000246784.3,ENST00000598979.1,ENST00000246785.3,ENST00000441864.2	chr19	50172304:50172372:50173472:50173745:50176954:50177116,	50173473	50173745	50173596	50173596	Frame_Shift_Del	C	-	p.P269fs
STAD	TCGA-BR-4368-01	C3orf62	ENST00000436325.1	chr3	49311481:49311573:49313859:49314274:49314618:49314652,	49313860	49314274	49314258	49314258	Frame_Shift_Del	T	-	p.K16fs
STAD	TCGA-BR-4368-01	TFAP2A	ENST00000466073.1	chr6	10400680:10400822:10402724:10402843:10404740:10404827,10398920:10398938:10402724:10402843:10404740:10404827,	10402725	10402843	10402804	10402804	Frame_Shift_Del	T	-	p.K268fs
STAD	TCGA-BR-6452-01	OCEL1	ENST00000600232.1,ENST00000601529.1	chr19	17337030:17337162:17337501:17337678:17337783:17338008,17337030:17337162:17337501:17337678:17337802:17338008,17337061:17337125:17337501:17337678:17337802:17338008,	17337502	17337678	17337542	17337542	Frame_Shift_Del	C	-	p.A37fs
STAD	TCGA-BR-6452-01	OCEL1	ENST00000599588.1	chr19	17337061:17337125:17337501:17338008:17339064:17339118,	17337502	17338008	17337542	17337542	Frame_Shift_Del	C	-	p.A37fs
STAD	TCGA-BR-6452-01	CERK	ENST00000216264.8,ENST00000443629.1,ENST00000541677.1	chr22	47082999:47083103:47085888:47086097:47087468:47087674,	47085889	47086097	47086002	47086002	Frame_Shift_Del	C	-	p.G476fs
STAD	TCGA-BR-6452-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556609	155556609	Frame_Shift_Del	G	-	p.R1028fs
STAD	TCGA-BR-6452-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556609	155556609	Frame_Shift_Del	G	-	p.R1028fs
STAD	TCGA-BR-6852-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91708403	91708403	Frame_Shift_Del	A	-	p.E2319fs
STAD	TCGA-BR-7197-01	HDAC7	ENST00000445237.2,ENST00000380610.4,ENST00000430670.1,ENST00000450805.1,ENST00000427332.2,ENST00000354334.3,ENST00000434070.1,ENST00000417107.1,ENST00000080059.7	chr12	48192422:48192435:48192567:48192755:48213549:48213568,48192422:48192435:48192567:48192755:48196006:48196057,	48192568	48192755	48192633	48192633	Frame_Shift_Del	G	-	p.Q26fs
STAD	TCGA-BR-7703-01	AKAP13	ENST00000394518.2,ENST00000560579.1,ENST00000361243.2,ENST00000394510.2	chr15	86278222:86278381:86278790:86278861:86279320:86279365,	86278791	86278861	86278855	86278855	Frame_Shift_Del	A	-	p.L2502fs
STAD	TCGA-BR-7703-01	SNX29	ENST00000562510.1,ENST00000306030.3,ENST00000564791.1,ENST00000566228.1,ENST00000323433.4	chr16	12450109:12450136:12492302:12492358:12497304:12497386,	12492303	12492358	12492337	12492338	Frame_Shift_Del	AG	-	p.Q260fs
STAD	TCGA-BR-7703-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000591529.1,ENST00000587672.1,ENST00000589205.1,ENST00000426948.2,ENST00000443826.3	chr19	3011019:3011158:3013666:3013816:3014567:3014612,	3013667	3013816	3013795	3013796	Frame_Shift_Ins	-	G	p.P248fs
STAD	TCGA-BR-7703-01	ACVR2A	ENST00000241416.7,ENST00000535787.1,ENST00000404590.1	chr2	148677798:148677913:148680541:148680680:148683599:148683730,	148680542	148680680	148680608	148680608	Frame_Shift_Del	T	-	p.F382fs
STAD	TCGA-BR-7703-01	SPEG	ENST00000396698.1,ENST00000312358.7,ENST00000464989.1,ENST00000498378.1	chr2	220309766:220309883:220312695:220313993:220315857:220316001,	220312696	220313993	220313756	220313756	Frame_Shift_Del	C	-	p.P626fs
STAD	TCGA-BR-7703-01	SOBP	ENST00000317357.5	chr6	107908283:107908379:107954717:107956673:107979410:107981357,	107954718	107956673	107955431	107955431	Frame_Shift_Del	C	-	p.H461fs
STAD	TCGA-BR-7703-01	OPLAH	ENST00000534424.1,ENST00000426825.1	chr8	145113398:145113594:145113675:145113799:145113882:145113982,	145113676	145113799	145113719	145113720	Frame_Shift_Del	GA	-	p.S181fs
STAD	TCGA-BR-7707-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-7707-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671669	77671669	Frame_Shift_Del	T	-	p.K3169fs
STAD	TCGA-BR-7707-01	MAP2K7	ENST00000397979.3,ENST00000397981.3,ENST00000397983.3	chr19	7974639:7974781:7974947:7975014:7975144:7975258,	7974948	7975014	7975006	7975006	Frame_Shift_Del	G	-	p.G109fs
STAD	TCGA-BR-7707-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379233	29379233	Frame_Shift_Del	A	-	p.S393fs
STAD	TCGA-BR-7707-01	DDX60L	ENST00000505863.1	chr4	169337832:169337948:169341411:169341531:169342910:169343060,	169341412	169341531	169341447	169341448	Frame_Shift_Ins	-	A	p.F826fs
STAD	TCGA-BR-7722-01	ITGAV	ENST00000374907.3,ENST00000433736.2,ENST00000430709.1,ENST00000261023.3	chr2	187534427:187534541:187540330:187540444:187540546:187540654,	187540331	187540444	187540409	187540409	Frame_Shift_Del	G	-	p.V929fs
STAD	TCGA-BR-7851-01	RABGAP1L	ENST00000251507.4	chr1	174668662:174668788:174671250:174671394:174721450:174721492,	174671251	174671394	174671277	174671277	Frame_Shift_Del	T	-	p.H684fs
STAD	TCGA-BR-7851-01	CRLF3	ENST00000578692.1,ENST00000544695.1,ENST00000324238.6	chr17	29120467:29120690:29123177:29123355:29124328:29124416,	29123178	29123355	29123265	29123265	Frame_Shift_Del	A	-	p.F172fs
STAD	TCGA-BR-7851-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827882	48827882	Frame_Shift_Del	A	-	p.K387fs
STAD	TCGA-BR-7851-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255247	9255247	Frame_Shift_Del	A	-	p.E661fs
STAD	TCGA-BR-7851-01	SLC13A3	ENST00000290317.5,ENST00000495082.1,ENST00000472148.1,ENST00000279027.4,ENST00000435032.1,ENST00000396360.1,ENST00000413164.2	chr20	45188632:45188837:45192052:45192190:45194867:45195029,	45192053	45192190	45192098	45192098	Frame_Shift_Del	G	-	p.P529fs
STAD	TCGA-BR-7851-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52677263:52677359:52678719:52678805:52682359:52682458,	52678720	52678805	52678784	52678784	Frame_Shift_Del	T	-	p.I279fs
STAD	TCGA-BR-7851-01	NPHP3	ENST00000326682.8,ENST00000337331.5,ENST00000469232.1,ENST00000343113.4	chr3	132437837:132437988:132438548:132438674:132440806:132440851,	132438549	132438674	132438662	132438662	Frame_Shift_Del	T	-	p.T136fs
STAD	TCGA-BR-7851-01	GOLGA2	ENST00000609374.1,ENST00000421699.2	chr9	131022404:131022468:131022743:131023081:131023450:131023538,	131022744	131023081	131023072	131023072	Frame_Shift_Del	G	-	p.P450fs
STAD	TCGA-BR-7851-01	UTY	ENST00000331397.4,ENST00000382896.4,ENST00000537580.1,ENST00000362096.4	chrY	15409586:15409728:15410836:15411024:15414756:15414871,	15410837	15411024	15411007	15411007	Frame_Shift_Del	A	-	p.L1136fs
STAD	TCGA-BR-8058-01	INTS6	ENST00000490542.1,ENST00000469430.1,ENST00000311234.4,ENST00000483746.1,ENST00000497989.1,ENST00000483441.1,ENST00000398119.2,ENST00000493153.1	chr13	51953677:51953708:51956164:51956259:51957464:51957597,	51956165	51956259	51956203	51956203	Frame_Shift_Del	C	-	p.E413fs
STAD	TCGA-BR-8059-01	GIPC1	ENST00000345425.2	chr19	14591404:14591590:14593500:14593818:14602467:14602555,14591404:14591590:14593500:14593818:14606848:14606864,	14593501	14593818	14593698	14593698	Frame_Shift_Del	C	-	p.E31fs
STAD	TCGA-BR-8059-01	PHTF2	ENST00000470215.1,ENST00000307305.8,ENST00000422959.2,ENST00000248550.7,ENST00000416283.2	chr7	77572016:77572103:77578994:77579150:77580933:77581029,	77578995	77579150	77579112	77579112	Frame_Shift_Del	A	-	p.K693fs
STAD	TCGA-BR-8078-01	AJAP1	ENST00000378190.3,ENST00000378191.4	chr1	4771959:4772759:4829912:4830000:4832339:4832585,	4829913	4830000	4829992	4829992	Frame_Shift_Del	A	-	p.L303fs
STAD	TCGA-BR-8078-01	APBB1	ENST00000608704.1	chr11	6424717:6424774:6424876:6425052:6426616:6426671,	6424877	6425052	6424925	6424925	Frame_Shift_Del	G	-	p.P283fs
STAD	TCGA-BR-8078-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736154	4736154	Frame_Shift_Del	G	-	p.P638fs
STAD	TCGA-BR-8078-01	HDAC7	ENST00000463732.1,ENST00000470668.1,ENST00000380610.4,ENST00000485796.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48188651:48188716:48188966:48189163:48189369:48189393,	48188967	48189163	48189044	48189045	Frame_Shift_Ins	-	G	p.P402fs
STAD	TCGA-BR-8078-01	ATXN2	ENST00000389153.4,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000392645.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111951277:111951343:111953957:111954167:111956052:111956231,	111953958	111954167	111954046	111954046	Frame_Shift_Del	G	-	p.P589fs
STAD	TCGA-BR-8078-01	IQCD	ENST00000546692.1	chr12	113638567:113638618:113645242:113646314:113658801:113658832,	113645243	113646314	113645381	113645381	Frame_Shift_Del	T	-	p.K197fs
STAD	TCGA-BR-8078-01	IQCD	ENST00000416617.2	chr12	113638567:113638618:113645242:113646064:113658801:113658832,	113645243	113646064	113645381	113645381	Frame_Shift_Del	T	-	p.K197fs
STAD	TCGA-BR-8078-01	MYO5C	ENST00000559696.1,ENST00000261839.7	chr15	52500750:52500840:52503926:52504081:52505384:52505483,	52503927	52504081	52504010	52504011	Frame_Shift_Ins	-	CA	p.V1404fs
STAD	TCGA-BR-8078-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645339	Frame_Shift_Del	A	-	p.K202fs
STAD	TCGA-BR-8078-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945482	6945482	Frame_Shift_Del	C	-	p.G340fs
STAD	TCGA-BR-8078-01	CALCOCO2	ENST00000258947.3,ENST00000508679.1,ENST00000448105.2,ENST00000506971.1,ENST00000509507.1,ENST00000416445.2	chr17	46930322:46930374:46933453:46933549:46937675:46937722,	46933454	46933549	46933463	46933464	Frame_Shift_Del	TT	-	p.F308fs
STAD	TCGA-BR-8078-01	GORASP1	ENST00000422110.2	chr3	39140925:39140994:39141795:39141945:39142506:39142593,	39141796	39141945	39141846	39141847	Frame_Shift_Ins	-	G	p.P238fs
STAD	TCGA-BR-8078-01	GORASP1	ENST00000441302.2	chr3	39140925:39140994:39141795:39142368:39142506:39142593,	39141796	39142368	39141846	39141847	Frame_Shift_Ins	-	G	p.P238fs
STAD	TCGA-BR-8078-01	IFRD2	ENST00000429673.2,ENST00000468737.1,ENST00000336089.4,ENST00000436390.1,ENST00000474556.1,ENST00000417626.2,ENST00000484043.1	chr3	50327611:50327725:50327818:50327903:50327990:50328110,	50327819	50327903	50327898	50327898	Frame_Shift_Del	C	-	p.D126fs
STAD	TCGA-BR-8078-01	BCL6	ENST00000419510.2,ENST00000232014.4,ENST00000406870.2	chr3	187443286:187443417:187446147:187446332:187446837:187447809,187444518:187444686:187446147:187446332:187446837:187447809,	187446148	187446332	187446270	187446270	Frame_Shift_Del	G	-	p.P473fs
STAD	TCGA-BR-8078-01	CREB5	ENST00000409603.1,ENST00000396298.2,ENST00000396299.2,ENST00000396300.2,ENST00000357727.2	chr7	28843815:28844139:28848803:28849031:28857687:28857796,	28848804	28849031	28848864	28848864	Frame_Shift_Del	G	-	p.G363fs
STAD	TCGA-BR-8078-01	POR	ENST00000454934.1,ENST00000496888.1,ENST00000450476.1,ENST00000545601.1,ENST00000419840.1,ENST00000461988.1,ENST00000439269.1,ENST00000447222.1,ENST00000394893.1	chr7	75614094:75614276:75614375:75614525:75614896:75615031,	75614376	75614525	75614451	75614451	Frame_Shift_Del	C	-	p.P442fs
STAD	TCGA-BR-8078-01	MGAM	ENST00000549489.2,ENST00000475668.2	chr7	141799412:141799537:141800601:141800690:141802429:141802479,	141800602	141800690	141800654	141800654	Frame_Shift_Del	G	-	p.G1747fs
STAD	TCGA-BR-8078-01	NOS3	ENST00000297494.3,ENST00000461406.1,ENST00000475017.1	chr7	150706485:150706673:150707202:150707375:150707684:150707895,	150707203	150707375	150707211	150707211	Frame_Shift_Del	C	-	p.P841fs
STAD	TCGA-BR-8078-01	DENND1A	ENST00000497135.1,ENST00000373624.2,ENST00000394219.3,ENST00000373620.3,ENST00000491650.1,ENST00000373618.1,ENST00000394215.2	chr9	126220071:126220176:126319848:126319974:126345447:126345496,	126319849	126319974	126319868	126319868	Frame_Shift_Del	T	-	p.N325fs
STAD	TCGA-BR-8078-01	DPP7	ENST00000497375.1,ENST00000473703.1,ENST00000478597.1,ENST00000485456.1,ENST00000473532.1,ENST00000371579.2	chr9	140008316:140008480:140008694:140008834:140008914:140008944,	140008695	140008834	140008718	140008718	Frame_Shift_Del	C	-	p.A100fs
STAD	TCGA-BR-8078-01	DPP7	ENST00000472306.1	chr9	140008316:140008480:140008694:140008830:140008914:140008944,	140008695	140008830	140008718	140008718	Frame_Shift_Del	C	-	p.A100fs
STAD	TCGA-BR-8081-01	TFRC	ENST00000392396.3,ENST00000540528.1,ENST00000420415.1,ENST00000475593.1,ENST00000535031.1,ENST00000360110.4	chr3	195780379:195780429:195781950:195782172:195785154:195785236,	195781951	195782172	195782167	195782168	Frame_Shift_Del	TG	-	p.T561fs
STAD	TCGA-BR-8289-01	TBX3	ENST00000349155.2,ENST00000257566.3	chr12	115111969:115112640:115114117:115114275:115115384:115115461,	115114118	115114275	115114134	115114134	Frame_Shift_Del	C	-	p.G361fs
STAD	TCGA-BR-8295-01	MRVI1	ENST00000527509.2,ENST00000531107.1,ENST00000541483.1,ENST00000421747.1,ENST00000552103.1,ENST00000424001.1,ENST00000545852.1,ENST00000526414.1,ENST00000547195.1,ENST00000558540.1,ENST00000423302.2	chr11	10649519:10649572:10650297:10650375:10651084:10651258,	10650298	10650375	10650316	10650316	Frame_Shift_Del	T	-	p.T212fs
STAD	TCGA-BR-8295-01	CAV2	ENST00000484871.1,ENST00000222693.4,ENST00000498493.1	chr7	116139894:116139985:116140313:116140501:116146024:116146083,	116140314	116140501	116140362	116140365	Frame_Shift_Del	GACA	-	p.D67fs
STAD	TCGA-BR-8360-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31604972	31604973	Frame_Shift_Ins	-	A	p.F510fs
STAD	TCGA-BR-8360-01	NOC4L	ENST00000541954.1,ENST00000330579.1,ENST00000535343.1	chr12	132632234:132632327:132632424:132632524:132632616:132632651,	132632425	132632524	132632428	132632428	Frame_Shift_Del	C	-	p.P203fs
STAD	TCGA-BR-8360-01	ZNF530	ENST00000600619.1	chr19	58115689:58115774:58117053:58119195:58123870:58124090,	58117054	58119195	58118568	58118568	Frame_Shift_Del	A	-	p.K559fs
STAD	TCGA-BR-8360-01	PRRT1	ENST00000375150.2,ENST00000375152.2	chr6	32117313:32117499:32118144:32118360:32119585:32119676,	32118145	32118360	32118218	32118218	Frame_Shift_Del	C	-	p.G162fs
STAD	TCGA-BR-8360-01	PRRT1	ENST00000211413.5	chr6	32117313:32117499:32118144:32118683:32119585:32119676,	32118145	32118683	32118218	32118218	Frame_Shift_Del	C	-	p.G162fs
STAD	TCGA-BR-8360-01	RBM28	ENST00000223073.2,ENST00000487602.1,ENST00000415472.2	chr7	127970871:127970981:127973343:127973416:127975596:127975733,	127973344	127973416	127973348	127973349	Frame_Shift_Ins	-	A	p.F338fs
STAD	TCGA-BR-8361-01	ECM1	ENST00000369049.4,ENST00000369047.4	chr1	150483351:150483674:150483932:150484307:150484827:150485048,	150483933	150484307	150484010	150484010	Frame_Shift_Del	G	-	p.Q262fs
STAD	TCGA-BR-8361-01	PPP1R12B	ENST00000491336.1,ENST00000608999.1,ENST00000391959.3,ENST00000367270.4,ENST00000498070.1,ENST00000290419.5,ENST00000336894.4	chr1	202457660:202457751:202462241:202462445:202464420:202464610,	202462242	202462445	202462365	202462365	Frame_Shift_Del	G	-	p.E689fs
STAD	TCGA-BR-8361-01	NUP107	ENST00000538993.1,ENST00000229179.4,ENST00000539906.1	chr12	69125386:69125499:69126416:69126519:69127231:69127305,	69126417	69126519	69126428	69126428	Frame_Shift_Del	A	-	p.L670fs
STAD	TCGA-BR-8361-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.K385fs
STAD	TCGA-BR-8361-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88452624:88452797:88453674:88453797:88454606:88454771,	88453675	88453797	88453675	88453675	Frame_Shift_Del	T	-	p.K2215fs
STAD	TCGA-BR-8361-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.P138fs
STAD	TCGA-BR-8361-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
STAD	TCGA-BR-8361-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349356	89349356	Frame_Shift_Del	T	-	p.K1198fs
STAD	TCGA-BR-8361-01	PLSCR3	ENST00000574401.1,ENST00000324822.11,ENST00000535512.1,ENST00000576362.1,ENST00000573213.1,ENST00000573070.1,ENST00000576201.1	chr17	7296785:7296828:7296919:7297155:7297422:7297586,	7296920	7297155	7296968	7296968	Frame_Shift_Del	G	-	p.P65fs
STAD	TCGA-BR-8361-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593495	48593496	Frame_Shift_Del	AG	-	p.R416fs
STAD	TCGA-BR-8361-01	FKBP8	ENST00000453489.2,ENST00000222308.4,ENST00000608443.1,ENST00000601844.1,ENST00000544835.3,ENST00000597960.3,ENST00000610101.1,ENST00000596558.2	chr19	18643495:18643605:18644079:18644157:18648410:18648514,	18644080	18644157	18644139	18644139	Frame_Shift_Del	C	-	p.E321fs
STAD	TCGA-BR-8361-01	ATF5	ENST00000423777.2,ENST00000595125.1	chr19	50432499:50432657:50433988:50434285:50435678:50435865,	50433989	50434285	50434211	50434211	Frame_Shift_Del	C	-	p.A35fs
STAD	TCGA-BR-8361-01	METTL8	ENST00000375258.4,ENST00000462821.1,ENST00000447486.1,ENST00000392604.2	chr2	172193981:172194012:172195693:172196064:172216931:172217023,	172195694	172196064	172195839	172195839	Frame_Shift_Del	T	-	p.N154fs
STAD	TCGA-BR-8361-01	RIPK4	ENST00000332512.3,ENST00000544709.1,ENST00000542057.1	chr21	43165918:43166022:43166772:43166931:43169313:43169363,	43166773	43166931	43166800	43166800	Frame_Shift_Del	C	-	p.D269fs
STAD	TCGA-BR-8361-01	PRMT2	ENST00000486520.1	chr21	48078656:48078832:48080744:48081848:48083294:48083466,	48080745	48081848	48080764	48080764	Frame_Shift_Del	T	-	p.F284fs
STAD	TCGA-BR-8361-01	WWC2	ENST00000403733.3,ENST00000378925.3,ENST00000448232.2,ENST00000438543.1,ENST00000513834.1	chr4	184161335:184161415:184166568:184166698:184169866:184170013,	184166569	184166698	184166576	184166576	Frame_Shift_Del	A	-	p.K204fs
STAD	TCGA-BR-8368-01	SSX2IP	ENST00000476905.2,ENST00000481102.1,ENST00000437941.2,ENST00000605755.1,ENST00000342203.3,ENST00000370612.4,ENST00000460500.1	chr1	85128137:85128213:85130099:85130235:85131804:85131915,	85130100	85130235	85130170	85130170	Frame_Shift_Del	T	-	p.K201fs
STAD	TCGA-BR-8368-01	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180904705	180904705	Frame_Shift_Del	C	-	p.P554fs
STAD	TCGA-BR-8368-01	HPX	ENST00000533856.1,ENST00000533369.1,ENST00000525057.1,ENST00000265983.3,ENST00000534800.1,ENST00000528348.1	chr11	6453135:6453247:6461696:6461768:6461901:6461954,6461394:6461516:6461696:6461768:6461901:6461954,	6461697	6461768	6461701	6461701	Frame_Shift_Del	A	-	p.F70fs
STAD	TCGA-BR-8368-01	LDHA	ENST00000396222.2,ENST00000430553.2,ENST00000227157.4,ENST00000494573.2,ENST00000541097.1,ENST00000539814.1	chr11	18416132:18416183:18418365:18418515:18420977:18421068,	18418366	18418515	18418442	18418442	Frame_Shift_Del	C	-	p.T18fs
STAD	TCGA-BR-8368-01	ANKRD13D	ENST00000506531.1	chr11	67059608:67059651:67066528:67067082:67067297:67067359,	67066529	67067082	67066574	67066575	Frame_Shift_Del	TG	-	p.T172fs
STAD	TCGA-BR-8368-01	ANKRD13D	ENST00000511455.2,ENST00000308440.6,ENST00000514166.1,ENST00000504186.1,ENST00000447274.2	chr11	67059608:67059651:67066528:67066595:67067000:67067082,	67066529	67066595	67066574	67066575	Frame_Shift_Del	TG	-	p.T172fs
STAD	TCGA-BR-8368-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108175401:108175579:108178623:108178711:108180886:108181042,	108178624	108178711	108178656	108178656	Frame_Shift_Del	A	-	p.K1903fs
STAD	TCGA-BR-8368-01	CACNA1C	ENST00000399638.1,ENST00000406454.3,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000399603.1,ENST00000399617.1,ENST00000399641.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000399634.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2795331:2795435:2797612:2797945:2800065:2800459,	2797613	2797945	2797835	2797835	Frame_Shift_Del	G	-	p.G2086fs
STAD	TCGA-BR-8368-01	CLN3	ENST00000565778.1,ENST00000568558.1,ENST00000357806.7,ENST00000565140.1,ENST00000567495.1,ENST00000568076.1,ENST00000566057.1,ENST00000565047.1	chr16	28493946:28493993:28495326:28495439:28498776:28498862,	28495327	28495439	28495431	28495434	Frame_Shift_Del	AAGA	-	p.F228fs
STAD	TCGA-BR-8368-01	RAB31	ENST00000581109.1	chr18	9815112:9815219:9845578:9845688:9859224:9859283,9792150:9792232:9845578:9845688:9859224:9859283,	9845579	9845688	9845647	9845648	Frame_Shift_Ins	-	A	p.A150fs
STAD	TCGA-BR-8368-01	BSG	ENST00000574970.1	chr19	572595:572701:577773:578121:579499:579629,575051:575140:577773:578121:579499:579629,	577774	578121	577814	577814	Frame_Shift_Del	G	-	p.V36fs
STAD	TCGA-BR-8368-01	SGSM1	ENST00000473458.1,ENST00000400358.4,ENST00000480523.1,ENST00000400359.4	chr22	25301071:25301154:25308609:25308719:25313624:25313721,	25308610	25308719	25308665	25308665	Frame_Shift_Del	C	-	p.F1013fs
STAD	TCGA-BR-8368-01	COL23A1	ENST00000390654.3	chr5	177681974:177682027:177683353:177683398:177683866:177683929,	177683354	177683398	177683356	177683356	Frame_Shift_Del	G	-	p.R294fs
STAD	TCGA-BR-8368-01	SLC12A9	ENST00000462106.1,ENST00000540482.1,ENST00000354161.3,ENST00000428758.1	chr7	100450398:100450461:100451777:100452000:100454489:100454798,100450398:100450461:100451777:100452000:100456456:100456564,100450374:100450457:100451777:100452000:100454489:100454798,100450374:100450457:100451777:100452000:100452241:100452376,	100451778	100452000	100452000	100452000	Frame_Shift_Del	G	-	p.G61fs
STAD	TCGA-BR-8368-01	DDX58	ENST00000379882.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32457055:32457416:32459368:32459512:32466287:32466439,	32459369	32459512	32459462	32459462	Frame_Shift_Del	T	-	p.K796fs
STAD	TCGA-BR-8372-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-8372-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068108	88068108	Frame_Shift_Del	A	-	p.F105fs
STAD	TCGA-BR-8372-01	STRN3	ENST00000357479.5	chr14	31382729:31382863:31398406:31398517:31404368:31404506,31388171:31388312:31398406:31398517:31404368:31404506,	31398407	31398517	31398422	31398423	Frame_Shift_Ins	-	C	p.G361fs
STAD	TCGA-BR-8372-01	SYDE1	ENST00000342784.2,ENST00000600440.1,ENST00000600252.1	chr19	15222123:15222250:15222442:15222603:15223156:15223382,	15222443	15222603	15222547	15222547	Frame_Shift_Del	C	-	p.P508fs
STAD	TCGA-BR-8372-01	ZAP70	ENST00000483781.1,ENST00000264972.5	chr2	98330378:98330457:98340478:98340901:98341554:98341705,	98340479	98340901	98340769	98340769	Frame_Shift_Del	C	-	p.D90fs
STAD	TCGA-BR-8372-01	TRNT1	ENST00000280591.6	chr3	3186267:3186394:3188113:3188247:3189133:3189387,	3188114	3188247	3188232	3188232	Frame_Shift_Del	A	-	p.K243fs
STAD	TCGA-BR-8372-01	TRNT1	ENST00000434583.1,ENST00000251607.6	chr3	3186267:3186394:3188113:3188307:3189133:3189387,	3188114	3188307	3188232	3188232	Frame_Shift_Del	A	-	p.K243fs
STAD	TCGA-BR-8372-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138452697	138452697	Frame_Shift_Del	A	-	p.F182fs
STAD	TCGA-BR-8372-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186545480	186545480	Frame_Shift_Del	T	-	p.N364fs
STAD	TCGA-BR-8372-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837127	17837128	Frame_Shift_Del	CT	-	p.E379fs
STAD	TCGA-BR-8372-01	HLA-C	ENST00000376228.5,ENST00000383329.3,ENST00000376237.4,ENST00000487245.1	chr6	31237742:31237862:31237986:31238262:31238849:31239108,	31237987	31238262	31238246	31238247	Frame_Shift_Del	GT	-	p.H212fs
STAD	TCGA-BR-8372-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603524	138603524	Frame_Shift_Del	A	-	p.L283fs
STAD	TCGA-BR-8372-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.K109fs
STAD	TCGA-BR-8382-01	USP8	ENST00000433963.1,ENST00000559329.1,ENST00000561330.1,ENST00000560730.1,ENST00000558091.1,ENST00000396444.3,ENST00000560297.1,ENST00000307179.4	chr15	50731239:50731374:50733545:50733690:50751196:50751267,50731239:50731374:50733545:50733690:50741596:50741637,	50733546	50733690	50733661	50733661	Frame_Shift_Del	A	-	p.K74fs
STAD	TCGA-BR-8382-01	MLXIPL	ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3	chr7	73011194:73011262:73011511:73012043:73013855:73013996,	73011512	73012043	73011913	73011913	Frame_Shift_Del	G	-	p.P401fs
STAD	TCGA-BR-8485-01	IFT57	ENST00000264538.3,ENST00000478157.1	chr3	107886639:107886711:107910367:107910490:107925474:107925543,	107910368	107910490	107910459	107910460	Frame_Shift_Del	AT	-	p.I229fs
STAD	TCGA-BR-8486-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579395	7579396	Frame_Shift_Ins	-	C	p.V97fs
STAD	TCGA-BR-8487-01	RERE	ENST00000476556.1,ENST00000337907.3,ENST00000377464.1,ENST00000400908.2	chr1	8414685:8415180:8415478:8415659:8416159:8416306,	8415479	8415659	8415652	8415652	Frame_Shift_Del	G	-	p.P1498fs
STAD	TCGA-BR-8487-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-BR-8487-01	MNDA	ENST00000368141.4	chr1	158813068:158813205:158813744:158813912:158815376:158815793,	158813745	158813912	158813814	158813814	Frame_Shift_Del	C	-	p.P158fs
STAD	TCGA-BR-8487-01	ZNF692	ENST00000476503.1	chr1	249148135:249148250:249149578:249149657:249149923:249150138,	249149579	249149657	249149644	249149645	Frame_Shift_Del	TT	-	p.K324fs
STAD	TCGA-BR-8487-01	PSD	ENST00000406432.1,ENST00000020673.5	chr10	104174619:104174986:104175773:104175876:104176141:104176878,	104175774	104175876	104175781	104175781	Frame_Shift_Del	G	-	p.P250fs
STAD	TCGA-BR-8487-01	C2CD3	ENST00000313663.7,ENST00000415191.2,ENST00000334126.7	chr11	73825428:73825638:73829272:73829427:73834032:73834180,	73829273	73829427	73829364	73829364	Frame_Shift_Del	T	-	p.I477fs
STAD	TCGA-BR-8487-01	ZFC3H1	ENST00000552994.1,ENST00000378743.3	chr12	72037874:72038098:72038656:72038855:72041528:72041593,	72038657	72038855	72038781	72038781	Frame_Shift_Del	T	-	p.K385fs
STAD	TCGA-BR-8487-01	ARL6IP4	ENST00000315580.5,ENST00000536502.1,ENST00000543566.1,ENST00000357866.4,ENST00000439686.2,ENST00000426960.2,ENST00000412505.2,ENST00000454885.2,ENST00000453766.2,ENST00000539770.1	chr12	123466577:123466621:123467015:123467085:123467166:123467223,	123467016	123467085	123467067	123467068	Frame_Shift_Del	AC	-	p.R336fs
STAD	TCGA-BR-8487-01	TRIP4	ENST00000557834.1	chr15	64680060:64680247:64686205:64686314:64687596:64687730,	64686206	64686314	64686218	64686218	Frame_Shift_Del	A	-	p.K59fs
STAD	TCGA-BR-8487-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645339	Frame_Shift_Del	A	-	p.K202fs
STAD	TCGA-BR-8487-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945482	6945482	Frame_Shift_Del	C	-	p.G340fs
STAD	TCGA-BR-8487-01	MIDN	ENST00000300952.2,ENST00000591446.2	chr19	1251837:1251900:1254165:1254477:1254900:1255060,	1254166	1254477	1254338	1254338	Frame_Shift_Del	C	-	p.S186fs
STAD	TCGA-BR-8487-01	PTPRS	ENST00000357368.4,ENST00000588552.1,ENST00000262963.6,ENST00000587303.1,ENST00000592099.1,ENST00000588012.1,ENST00000372412.4,ENST00000348075.2,ENST00000353284.2	chr19	5240209:5240343:5243911:5244493:5245786:5246056,	5243912	5244493	5244243	5244243	Frame_Shift_Del	G	-	p.P413fs
STAD	TCGA-BR-8487-01	ZNF234	ENST00000592437.1,ENST00000426739.2	chr19	44652923:44653050:44654565:44654658:44660404:44660507,	44654566	44654658	44654608	44654608	Frame_Shift_Del	A	-	p.E62fs
STAD	TCGA-BR-8487-01	PAX8	ENST00000497038.2,ENST00000485840.1,ENST00000429538.3	chr2	113984731:113984833:113992970:113993159:113994177:113994269,	113992971	113993159	113993122	113993122	Frame_Shift_Del	G	-	p.P312fs
STAD	TCGA-BR-8487-01	BZW1	ENST00000452790.2,ENST00000409600.1,ENST00000409226.1	chr2	201684704:201684843:201685905:201686028:201686869:201686893,	201685906	201686028	201685969	201685970	Frame_Shift_Del	AG	-	p.K422fs
STAD	TCGA-BR-8487-01	COL20A1	ENST00000435874.1,ENST00000358894.6,ENST00000326996.6,ENST00000422202.1	chr20	61942982:61943100:61943267:61943407:61943771:61943901,	61943268	61943407	61943276	61943277	Frame_Shift_Ins	-	C	p.A558fs
STAD	TCGA-BR-8487-01	BTG3	ENST00000348354.6	chr21	18977177:18977315:18981289:18981470:18985016:18985162,	18981290	18981470	18981391	18981391	Frame_Shift_Del	T	-	p.K24fs
STAD	TCGA-BR-8487-01	APPL1	ENST00000444459.1,ENST00000482800.1,ENST00000288266.3,ENST00000468342.1	chr3	57269593:57269692:57271519:57271579:57272072:57272144,	57271520	57271579	57271572	57271572	Frame_Shift_Del	A	-	p.E69fs
STAD	TCGA-BR-8487-01	AASDH	ENST00000205214.6,ENST00000502617.1,ENST00000451613.1,ENST00000513376.1	chr4	57237616:57237809:57244313:57244630:57248642:57248763,	57244314	57244630	57244505	57244505	Frame_Shift_Del	T	-	p.K159fs
STAD	TCGA-BR-8487-01	SEC31A	ENST00000443462.2,ENST00000505984.1,ENST00000508502.1,ENST00000264405.5	chr4	83750152:83750211:83763337:83763634:83765538:83765613,	83763338	83763634	83763593	83763594	Frame_Shift_Ins	-	C	p.G889fs
STAD	TCGA-BR-8487-01	SEC31A	ENST00000432794.1	chr4	83750152:83750211:83763292:83763634:83765538:83765613,83752089:83752128:83763292:83763634:83765538:83765613,	83763293	83763634	83763593	83763594	Frame_Shift_Ins	-	C	p.G889fs
STAD	TCGA-BR-8487-01	SLC38A9	ENST00000396865.2,ENST00000511233.1,ENST00000515159.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54931371:54931485:54941616:54941723:54945034:54945142,	54941617	54941723	54941671	54941671	Frame_Shift_Del	A	-	p.F371fs
STAD	TCGA-BR-8487-01	TMEM173	ENST00000507297.1,ENST00000503287.1,ENST00000330794.4	chr5	138855929:138856039:138856913:138857100:138857854:138858091,	138856914	138857100	138857068	138857068	Frame_Shift_Del	G	-	p.P264fs
STAD	TCGA-BR-8487-01	COL11A2	ENST00000341947.2,ENST00000457788.1,ENST00000374714.1	chr6	33148887:33148947:33151921:33152101:33153477:33153555,33148887:33148947:33151921:33152101:33154403:33154595,33148887:33148947:33151921:33152101:33152768:33152831,	33151922	33152101	33152075	33152075	Frame_Shift_Del	G	-	p.P322fs
STAD	TCGA-BR-8487-01	BEND6	ENST00000370746.3,ENST00000370748.3,ENST00000370745.1	chr6	56820169:56820258:56846508:56846728:56857175:56857353,	56846509	56846728	56846680	56846681	Frame_Shift_Del	AG	-	p.T24fs
STAD	TCGA-BR-8487-01	THBS2	ENST00000366787.3	chr6	169646291:169646376:169648511:169649068:169650827:169650901,	169648512	169649068	169648522	169648523	Frame_Shift_Del	CT	-	p.S200fs
STAD	TCGA-BR-8487-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968162	5968162	Frame_Shift_Del	T	-	p.K690fs
STAD	TCGA-BR-8487-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091415	35091416	Frame_Shift_Del	CA	-	p.V823fs
STAD	TCGA-BR-8590-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144997872	144997873	Frame_Shift_Del	CA	-	p.V2212fs
STAD	TCGA-BR-8591-01	ZMYM2	ENST00000382871.2,ENST00000382870.3,ENST00000382874.2,ENST00000382869.3	chr13	20633586:20633702:20635192:20635364:20636985:20637111,	20635193	20635364	20635264	20635264	Frame_Shift_Del	A	-	p.L937fs
STAD	TCGA-BR-8591-01	BCL7C	ENST00000574418.1	chr16	30900180:30900266:30903906:30904035:30904532:30904611,	30903907	30904035	30903991	30903991	Frame_Shift_Del	G	-	p.Q120fs
STAD	TCGA-BR-8591-01	OSGIN1	ENST00000393306.1,ENST00000565123.1	chr16	83986866:83986975:83991244:83991343:83992864:83993001,	83991245	83991343	83991264	83991264	Frame_Shift_Del	C	-	p.S79fs
STAD	TCGA-BR-8591-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000336057.5,ENST00000225983.6	chr17	42158130:42158250:42159952:42160040:42160132:42160188,	42159953	42160040	42160038	42160038	Frame_Shift_Del	C	-	p.G841fs
STAD	TCGA-BR-8591-01	LRRC31	ENST00000264676.5	chr3	169578348:169578516:169579457:169579601:169587420:169587621,169574492:169574660:169579457:169579601:169587420:169587621,	169579458	169579601	169579523	169579523	Frame_Shift_Del	T	-	p.K85fs
STAD	TCGA-BR-8591-01	RNF212	ENST00000508428.1	chr4	1073430:1073476:1075354:1075407:1079683:1079742,	1075355	1075407	1075367	1075368	Frame_Shift_Del	TT	-	p.K134fs
STAD	TCGA-BR-8591-01	ZNF483	ENST00000358151.4,ENST00000309235.5,ENST00000355824.3	chr9	114289547:114290087:114293154:114293243:114296018:114296145,	114293155	114293243	114293219	114293222	Frame_Shift_Del	TGTT	-	p.T159fs
STAD	TCGA-BR-8592-01	ALG13	ENST00000394780.3,ENST00000251943.4,ENST00000495283.1	chrX	110951254:110951621:110952192:110952276:110954902:110954953,	110952193	110952276	110952207	110952207	Frame_Shift_Del	G	-	p.Q255fs
STAD	TCGA-BR-8678-01	PRR5L	ENST00000527487.1	chr11	36458934:36459026:36467849:36467990:36472758:36472885,36458934:36459026:36467849:36467990:36483891:36483989,	36467850	36467990	36467865	36467865	Frame_Shift_Del	A	-	p.I154fs
STAD	TCGA-BR-8679-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32561145	32561149	Frame_Shift_Del	GAGAA	-	p.E424fs
STAD	TCGA-BR-8679-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579381	7579381	Frame_Shift_Del	G	-	p.T102fs
STAD	TCGA-BR-8680-01	PPP4R4	ENST00000304338.3	chr14	94703901:94704023:94707009:94707132:94708124:94708294,	94707010	94707132	94707088	94707091	Frame_Shift_Del	TTTC	-	p.I311fs
STAD	TCGA-BR-8686-01	TM7SF3	ENST00000535260.1,ENST00000343028.4,ENST00000543655.1,ENST00000545303.1,ENST00000535819.1	chr12	27133498:27133579:27135705:27135792:27143382:27143479,	27135706	27135792	27135767	27135767	Frame_Shift_Del	G	-	p.F298fs
STAD	TCGA-BR-8686-01	SEMA6A	ENST00000503962.1,ENST00000257414.8,ENST00000343348.6,ENST00000510263.1,ENST00000515009.1	chr5	115827491:115827526:115831108:115831210:115831946:115832009,	115831109	115831210	115831175	115831175	Frame_Shift_Del	C	-	p.K126fs
STAD	TCGA-BR-A452-01	RB1	ENST00000267163.4	chr13	48934152:48934263:48936950:48937093:48939029:48939107,	48936951	48937093	48937043	48937046	Frame_Shift_Del	ACAA	-	p.T271fs
STAD	TCGA-BR-A453-01	MLXIPL	ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3	chr7	73011194:73011262:73011511:73012043:73013855:73013996,	73011512	73012043	73011627	73011627	Frame_Shift_Del	G	-	p.P496fs
STAD	TCGA-BR-A4J8-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578266	7578267	Frame_Shift_Ins	-	A	p.L194fs
STAD	TCGA-BR-A4PD-01	TBCA	ENST00000306388.6	chr5	76989090:76989177:77004066:77004172:77072028:77072085,	77004067	77004172	77004071	77004071	Frame_Shift_Del	T	-	p.K52fs
STAD	TCGA-BR-A4QL-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236735	33236735	Frame_Shift_Del	C	-	p.T593fs
STAD	TCGA-BR-A4QL-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206848	89206848	Frame_Shift_Del	A	-	p.K76fs
STAD	TCGA-BR-A4QL-01	SOAT1	ENST00000540564.1	chr1	179292571:179292630:179304640:179304792:179306971:179307031,179271811:179271937:179304640:179304792:179306971:179307031,	179304641	179304792	179304653	179304653	Frame_Shift_Del	T	-	p.F64fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128509	202128510	Frame_Shift_Ins	-	C	p.G7fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128509	202128510	Frame_Shift_Ins	-	C	p.G7fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128509	202128510	Frame_Shift_Ins	-	C	p.G7fs
STAD	TCGA-BR-A4QL-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-A4QL-01	RRP8	ENST00000533907.1	chr11	6622483:6622832:6623081:6623445:6624633:6624809,	6623082	6623445	6623374	6623374	Frame_Shift_Del	G	-	p.P57fs
STAD	TCGA-BR-A4QL-01	RRP8	ENST00000530762.1	chr11	6622483:6622832:6623081:6623494:6624633:6624809,	6623082	6623494	6623374	6623374	Frame_Shift_Del	G	-	p.P57fs
STAD	TCGA-BR-A4QL-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
STAD	TCGA-BR-A4QL-01	SAAL1	ENST00000524803.1	chr11	18102957:18103050:18105081:18105278:18108412:18108507,	18105082	18105278	18105214	18105214	Frame_Shift_Del	T	-	p.K369fs
STAD	TCGA-BR-A4QL-01	SAAL1	ENST00000534721.1	chr11	18102957:18103050:18105081:18105256:18108412:18108507,	18105082	18105256	18105214	18105214	Frame_Shift_Del	T	-	p.K369fs
STAD	TCGA-BR-A4QL-01	SAAL1	ENST00000300013.4	chr11	18102957:18103050:18105081:18105275:18108412:18108507,	18105082	18105275	18105214	18105214	Frame_Shift_Del	T	-	p.K369fs
STAD	TCGA-BR-A4QL-01	FOXR1	ENST00000317011.3	chr11	118849791:118849914:118850151:118850378:118851199:118851282,	118850152	118850378	118850287	118850287	Frame_Shift_Del	C	-	p.P174fs
STAD	TCGA-BR-A4QL-01	DTX3	ENST00000548198.1,ENST00000548804.1,ENST00000337737.3	chr12	58000225:58000301:58000647:58001396:58002302:58002520,	58000648	58001396	58001060	58001060	Frame_Shift_Del	C	-	p.L138fs
STAD	TCGA-BR-A4QL-01	DTX3	ENST00000551632.1	chr12	58000225:58000301:58000666:58001396:58002302:58002520,	58000667	58001396	58001060	58001060	Frame_Shift_Del	C	-	p.L138fs
STAD	TCGA-BR-A4QL-01	COG6	ENST00000455146.3,ENST00000356576.4,ENST00000416691.1	chr13	40268770:40268862:40273637:40273755:40293372:40293504,	40273638	40273755	40273702	40273702	Frame_Shift_Del	A	-	p.K411fs
STAD	TCGA-BR-A4QL-01	KIAA0556	ENST00000261588.4	chr16	27751361:27752241:27760904:27761627:27763039:27763245,	27760905	27761627	27761168	27761168	Frame_Shift_Del	G	-	p.G963fs
STAD	TCGA-BR-A4QL-01	CORO1A	ENST00000563778.1,ENST00000561815.1,ENST00000219150.5,ENST00000569970.1,ENST00000568763.1,ENST00000565497.1,ENST00000570045.1	chr16	30196529:30196728:30198136:30198266:30198359:30198404,30197918:30198041:30198136:30198266:30198359:30198404,	30198137	30198266	30198155	30198155	Frame_Shift_Del	G	-	p.G114fs
STAD	TCGA-BR-A4QL-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68264112:68264218:68264291:68264457:68264743:68264930,	68264292	68264457	68264452	68264452	Frame_Shift_Del	G	-	p.P645fs
STAD	TCGA-BR-A4QL-01	RNF213	ENST00000508628.2,ENST00000582970.1	chr17	78311632:78311797:78313000:78314156:78316931:78317125,	78313001	78314156	78314019	78314019	Frame_Shift_Del	C	-	p.T24fs
STAD	TCGA-BR-A4QL-01	KIAA0355	ENST00000299505.6	chr19	34830771:34830897:34832326:34833360:34838781:34838947,	34832327	34833360	34833075	34833075	Frame_Shift_Del	C	-	p.P746fs
STAD	TCGA-BR-A4QL-01	PPP1R13L	ENST00000418234.2,ENST00000585905.1,ENST00000360957.5	chr19	45899595:45899694:45899802:45900316:45901262:45901405,	45899803	45900316	45900258	45900259	Frame_Shift_Ins	-	G	p.R86fs
STAD	TCGA-BR-A4QL-01	IMMT	ENST00000410111.3,ENST00000474969.1,ENST00000442664.2	chr2	86398330:86398468:86400772:86400884:86406555:86406745,	86400773	86400884	86400804	86400804	Frame_Shift_Del	T	-	p.K130fs
STAD	TCGA-BR-A4QL-01	NCKAP5	ENST00000409261.1,ENST00000405974.3,ENST00000317721.6,ENST00000409213.1	chr2	133721292:133721442:133751724:133751812:133887549:133887683,	133751725	133751812	133751755	133751755	Frame_Shift_Del	T	-	p.K133fs
STAD	TCGA-BR-A4QL-01	TAF4	ENST00000252996.4,ENST00000436129.2	chr20	60574038:60574164:60575179:60575310:60575607:60575777,	60575180	60575310	60575303	60575303	Frame_Shift_Del	T	-	p.K888fs
STAD	TCGA-BR-A4QL-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289120	31289120	Frame_Shift_Del	C	-	p.H627fs
STAD	TCGA-BR-A4QL-01	PAICS	ENST00000264221.2,ENST00000505164.1,ENST00000512576.1,ENST00000514888.1	chr4	57302427:57302494:57307828:57308026:57312860:57313039,	57307829	57308026	57307843	57307843	Frame_Shift_Del	A	-	p.K11fs
STAD	TCGA-BR-A4QL-01	BANK1	ENST00000322953.4,ENST00000444316.2,ENST00000504592.1,ENST00000508653.1,ENST00000428908.1	chr4	102946357:102946666:102951116:102951422:102964995:102965064,	102951117	102951422	102951317	102951317	Frame_Shift_Del	A	-	p.K599fs
STAD	TCGA-BR-A4QL-01	PCDH18	ENST00000507846.1	chr4	138449885:138449971:138450755:138452896:138453408:138453565,	138450756	138452896	138452697	138452697	Frame_Shift_Del	A	-	p.F182fs
STAD	TCGA-BR-A4QL-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123983920	123983920	Frame_Shift_Del	T	-	p.K719fs
STAD	TCGA-BR-A4QL-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171780891:171781009:171785776:171785881:171789738:171789873,	171785777	171785881	171785810	171785810	Frame_Shift_Del	C	-	p.V212fs
STAD	TCGA-BR-A4QL-01	HIVEP1	ENST00000487103.1,ENST00000478545.1,ENST00000379388.2,ENST00000491710.1	chr6	12015819:12015901:12089416:12089470:12120122:12120167,	12089417	12089470	12089463	12089463	Frame_Shift_Del	A	-	p.S29fs
STAD	TCGA-BR-A4QL-01	CUL7	ENST00000535468.1,ENST00000265348.3	chr6	43017700:43017897:43017997:43018136:43018705:43019206,	43017998	43018136	43018130	43018130	Frame_Shift_Del	A	-	p.W414fs
STAD	TCGA-BR-A4QL-01	REV3L	ENST00000470871.1,ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111708967:111709116:111709203:111709288:111710308:111710413,	111709204	111709288	111709248	111709248	Frame_Shift_Del	A	-	p.F301fs
STAD	TCGA-BR-A4QL-01	FAM184A	ENST00000368475.4,ENST00000521531.1,ENST00000352896.5,ENST00000522284.1,ENST00000338891.7	chr6	119341142:119341324:119344109:119344245:119345123:119345978,	119344110	119344245	119344234	119344234	Frame_Shift_Del	T	-	p.K342fs
STAD	TCGA-BR-A4QL-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134568	128134568	Frame_Shift_Del	T	-	p.K406fs
STAD	TCGA-BR-A4QL-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143094745	143094745	Frame_Shift_Del	T	-	p.K377fs
STAD	TCGA-BR-A4QL-01	ELN	ENST00000252034.7,ENST00000380576.5,ENST00000358929.4,ENST00000380562.4,ENST00000320492.7,ENST00000414324.1,ENST00000320399.6,ENST00000458204.1	chr7	73480023:73480062:73480273:73480327:73481061:73481106,	73480274	73480327	73480300	73480300	Frame_Shift_Del	G	-	p.G693fs
STAD	TCGA-BR-A4QL-01	TRPM6	ENST00000361255.3,ENST00000360774.1,ENST00000449912.2,ENST00000376864.4,ENST00000451710.3	chr9	77376611:77376724:77376914:77378050:77386618:77386751,	77376915	77378050	77377518	77377518	Frame_Shift_Del	A	-	p.S1357fs
STAD	TCGA-BR-A4QM-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492797	56492798	Frame_Shift_Ins	-	A	p.I47fs
STAD	TCGA-BR-A4QM-01	AP1S1	ENST00000443943.1	chr7	100797763:100797798:100799874:100800053:100800657:100800766,	100799875	100800053	100799921	100799921	Frame_Shift_Del	A	-	p.Q17fs
STAD	TCGA-CD-5804-01	ARL1	ENST00000551092.1	chr12	101796642:101796724:101799621:101799759:101801419:101801524,101796919:101797033:101799621:101799759:101801419:101801524,	101799622	101799759	101799750	101799750	Frame_Shift_Del	A	-	p.F5fs
STAD	TCGA-CD-8527-01	NAGPA	ENST00000562746.1,ENST00000569296.1,ENST00000312251.3,ENST00000381955.3,ENST00000562037.1,ENST00000563578.1	chr16	5078946:5079009:5080385:5080494:5081745:5081885,	5080386	5080494	5080423	5080423	Frame_Shift_Del	C	-	p.V252fs
STAD	TCGA-CD-8527-01	THOC1	ENST00000579891.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6	chr18	224923:224994:225088:225139:225336:225403,	225089	225139	225119	225119	Frame_Shift_Del	G	-	p.P369fs
STAD	TCGA-CD-8527-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230650472:230650571:230652220:230652377:230653513:230653656,	230652221	230652377	230652221	230652221	Frame_Shift_Del	T	-	p.K1590fs
STAD	TCGA-CD-8536-01	DNAJC8	ENST00000489277.1,ENST00000263697.4	chr1	28531768:28531860:28534852:28534924:28536482:28536577,	28534853	28534924	28534906	28534907	Frame_Shift_Ins	-	T	p.K139fs
STAD	TCGA-CD-8536-01	RRP7A	ENST00000416699.1,ENST00000323013.6	chr22	42910687:42910785:42911156:42911274:42912016:42912142,	42911157	42911274	42911183	42911184	Frame_Shift_Del	CT	-	p.S145fs
STAD	TCGA-CD-A486-01	LGALS3BP	ENST00000591274.1,ENST00000589527.1,ENST00000589775.2,ENST00000591778.1,ENST00000262776.3,ENST00000585407.1,ENST00000588198.1	chr17	76970879:76970901:76972046:76972238:76973221:76973296,	76972047	76972238	76972185	76972185	Frame_Shift_Del	G	-	p.R36fs
STAD	TCGA-CD-A489-01	TMPRSS11A	ENST00000334830.7	chr4	68797710:68797778:68810227:68810355:68812167:68812282,	68810228	68810355	68810345	68810346	Frame_Shift_Ins	-	T	p.K48fs
STAD	TCGA-CD-A489-01	TMPRSS11A	ENST00000508048.1,ENST00000396188.2	chr4	68797710:68797778:68810236:68810355:68812167:68812282,	68810237	68810355	68810345	68810346	Frame_Shift_Ins	-	T	p.K48fs
STAD	TCGA-CD-A48C-01	CCL20	ENST00000473642.1,ENST00000358813.4,ENST00000409189.3	chr2	228680172:228680284:228681022:228681100:228681777:228682179,	228681023	228681100	228681080	228681081	Frame_Shift_Del	AT	-	p.K83fs
STAD	TCGA-CD-A4MG-01	HIPK1	ENST00000369554.2,ENST00000369558.1,ENST00000369561.4,ENST00000340480.4,ENST00000369559.4,ENST00000369555.2,ENST00000426820.2	chr1	114495387:114495511:114497272:114497392:114498184:114498271,	114497273	114497392	114497345	114497345	Frame_Shift_Del	T	-	p.F425fs
STAD	TCGA-CD-A4MG-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277954	186277954	Frame_Shift_Del	A	-	p.K1035fs
STAD	TCGA-CD-A4MG-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-CD-A4MG-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
STAD	TCGA-CD-A4MG-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000356219.3,ENST00000404621.1,ENST00000458234.1	chr12	124839977:124840117:124841187:124841352:124846671:124846840,	124841188	124841352	124841289	124841289	Frame_Shift_Del	G	-	p.P1055fs
STAD	TCGA-CD-A4MG-01	NCOR2	ENST00000405201.1	chr12	124839977:124840117:124841187:124841328:124846671:124846840,	124841188	124841328	124841289	124841289	Frame_Shift_Del	G	-	p.P1055fs
STAD	TCGA-CD-A4MG-01	AHSA1	ENST00000556369.1,ENST00000535854.2,ENST00000216479.3,ENST00000555473.1,ENST00000555133.1	chr14	77931916:77932010:77934425:77934527:77934799:77934851,	77934426	77934527	77934510	77934510	Frame_Shift_Del	G	-	p.G259fs
STAD	TCGA-CD-A4MG-01	SMG1	ENST00000565224.1,ENST00000565324.1,ENST00000446231.2,ENST00000389467.3,ENST00000561947.1	chr16	18888452:18888554:18890816:18891041:18893486:18893660,	18890817	18891041	18890990	18890990	Frame_Shift_Del	A	-	p.S449fs
STAD	TCGA-CD-A4MG-01	KCTD13	ENST00000563264.1,ENST00000566842.1,ENST00000308768.5,ENST00000568995.1,ENST00000568000.1	chr16	29923135:29923188:29923280:29923370:29934510:29934558,	29923281	29923370	29923364	29923364	Frame_Shift_Del	T	-	p.R141fs
STAD	TCGA-CD-A4MG-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53692325:53692376:53692683:53692790:53698781:53698921,	53692684	53692790	53692705	53692705	Frame_Shift_Del	T	-	p.K443fs
STAD	TCGA-CD-A4MG-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433820:10433950:10434050:10434242:10439317:10439728,	10434051	10434242	10434093	10434093	Frame_Shift_Del	G	-	p.P319fs
STAD	TCGA-CD-A4MG-01	SIGLEC10	ENST00000339313.5,ENST00000436984.2,ENST00000441969.3,ENST00000353836.5,ENST00000356298.5,ENST00000432469.2,ENST00000439889.2	chr19	51918821:51918869:51919151:51919421:51919563:51919611,	51919152	51919421	51919372	51919372	Frame_Shift_Del	T	-	p.K268fs
STAD	TCGA-CD-A4MG-01	ETAA1	ENST00000272342.5	chr2	67626358:67626429:67626681:67626758:67629993:67630106,	67626682	67626758	67626691	67626692	Frame_Shift_Ins	-	A	p.R121fs
STAD	TCGA-CD-A4MG-01	SLC25A17	ENST00000412879.1	chr22	41175081:41175129:41195026:41195087:41215198:41215291,41190517:41190584:41195026:41195087:41215198:41215291,41188535:41188680:41195026:41195087:41215198:41215291,	41195027	41195087	41195058	41195058	Frame_Shift_Del	A	-	p.F28fs
STAD	TCGA-CD-A4MG-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54537518:54537681:54596826:54596958:54603821:54603882,	54596827	54596958	54596940	54596940	Frame_Shift_Del	T	-	p.F220fs
STAD	TCGA-CD-A4MG-01	KALRN	ENST00000454902.1,ENST00000428018.2,ENST00000393496.1	chr3	124351266:124351550:124352695:124352800:124369654:124369762,	124352696	124352800	124352739	124352740	Frame_Shift_Del	CA	-	p.S1835fs
STAD	TCGA-CD-A4MG-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90857472	90857472	Frame_Shift_Del	A	-	p.K881fs
STAD	TCGA-CD-A4MG-01	PDGFC	ENST00000504672.1	chr4	157684241:157684358:157688924:157689028:157689113:157689142,	157688925	157689028	157688934	157688934	Frame_Shift_Del	T	-	p.K304fs
STAD	TCGA-CD-A4MG-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14488155	14488156	Frame_Shift_Ins	-	C	p.F2473fs
STAD	TCGA-CD-A4MG-01	ERCC8	ENST00000543101.1,ENST00000426742.2,ENST00000381118.3,ENST00000265038.5	chr5	60183266:60183347:60186715:60186913:60194102:60194227,	60186716	60186913	60186878	60186878	Frame_Shift_Del	T	-	p.K293fs
STAD	TCGA-CD-A4MG-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351534	74351534	Frame_Shift_Del	C	-	p.G135fs
STAD	TCGA-CD-A4MG-01	MYO6	ENST00000369977.3,ENST00000369981.3	chr6	76604962:76604977:76608089:76608128:76617321:76617425,	76608090	76608128	76608118	76608118	Frame_Shift_Del	T	-	p.F1056fs
STAD	TCGA-CD-A4MG-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000526832.1,ENST00000356994.2	chr8	144874160:144874303:144874389:144874575:144874654:144874801,	144874390	144874575	144874553	144874554	Frame_Shift_Ins	-	C	p.P1450fs
STAD	TCGA-CD-A4MG-01	SCRIB	ENST00000525051.1	chr8	144874160:144874303:144874389:144874571:144874654:144874801,	144874390	144874571	144874553	144874554	Frame_Shift_Ins	-	C	p.P1450fs
STAD	TCGA-CD-A4MG-01	RBBP7	ENST00000380084.4,ENST00000416035.1,ENST00000380087.2	chrX	16875716:16875832:16876798:16876972:16881077:16881144,	16876799	16876972	16876853	16876853	Frame_Shift_Del	T	-	p.T143fs
STAD	TCGA-CD-A4MG-01	RBBP7	ENST00000404022.1	chrX	16875716:16875832:16876798:16876945:16881077:16881144,	16876799	16876945	16876853	16876853	Frame_Shift_Del	T	-	p.T143fs
STAD	TCGA-CD-A4MG-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153588357:153588955:153589675:153589938:153590037:153590155,	153589676	153589938	153589691	153589691	Frame_Shift_Del	G	-	p.P1064fs
STAD	TCGA-CD-A4MI-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14488156	14488156	Frame_Shift_Del	C	-	p.F2473fs
STAD	TCGA-CD-A4MJ-01	TMEM8A	ENST00000476735.1	chr16	427426:427585:427670:427848:434255:434396,	427671	427848	427749	427749	Frame_Shift_Del	G	-	p.P74fs
STAD	TCGA-CD-A4MJ-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-CG-4305-01	ZC4H2	ENST00000337990.2,ENST00000374839.3,ENST00000476032.1,ENST00000545618.1,ENST00000488831.1	chrX	64137737:64137776:64138921:64139084:64139960:64140007,	64138922	64139084	64139033	64139033	Frame_Shift_Del	G	-	p.P150fs
STAD	TCGA-CG-4306-01	SLC25A17	ENST00000412879.1	chr22	41175081:41175129:41195026:41195087:41215198:41215291,41190517:41190584:41195026:41195087:41215198:41215291,41188535:41188680:41195026:41195087:41215198:41215291,	41195027	41195087	41195058	41195058	Frame_Shift_Del	A	-	p.F28fs
STAD	TCGA-CG-4306-01	ZC4H2	ENST00000337990.2,ENST00000374839.3,ENST00000476032.1,ENST00000545618.1,ENST00000488831.1	chrX	64137737:64137776:64138921:64139084:64139960:64140007,	64138922	64139084	64139033	64139033	Frame_Shift_Del	G	-	p.P150fs
STAD	TCGA-CG-4441-01	POLD1	ENST00000440232.2,ENST00000593981.1,ENST00000599857.1,ENST00000595904.1	chr19	50918694:50918847:50918980:50919083:50919652:50919785,	50918981	50919083	50918996	50918996	Frame_Shift_Del	C	-	p.D911fs
STAD	TCGA-CG-4442-01	VWA1	ENST00000476993.1	chr1	1371114:1371201:1372306:1372864:1374460:1375598,	1372307	1372864	1372689	1372689	Frame_Shift_Del	C	-	p.G152fs
STAD	TCGA-CG-4442-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.P2802fs
STAD	TCGA-CG-4442-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
STAD	TCGA-CG-4442-01	GPR137	ENST00000377702.4	chr11	64054436:64054486:64055192:64055418:64055536:64055561,64054448:64054486:64055192:64055418:64055811:64055940,	64055193	64055418	64055217	64055217	Frame_Shift_Del	G	-	p.V144fs
STAD	TCGA-CG-4442-01	NADSYN1	ENST00000530055.1,ENST00000525200.1,ENST00000539574.1,ENST00000319023.2,ENST00000529840.1,ENST00000527852.1	chr11	71192401:71192450:71192968:71193071:71193894:71194032,	71192969	71193071	71192975	71192975	Frame_Shift_Del	T	-	p.F352fs
STAD	TCGA-CG-4442-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77413116	77413116	Frame_Shift_Del	T	-	p.K386fs
STAD	TCGA-CG-4442-01	DDX6	ENST00000264018.4,ENST00000534980.1,ENST00000526070.2	chr11	118627879:118627996:118629482:118629611:118630630:118630753,	118629483	118629611	118629513	118629513	Frame_Shift_Del	T	-	p.K321fs
STAD	TCGA-CG-4442-01	HMGA2	ENST00000536545.1,ENST00000537275.1,ENST00000537429.1,ENST00000354636.3,ENST00000541363.1,ENST00000393578.3,ENST00000393577.3,ENST00000425208.2	chr12	66218902:66219161:66221780:66221867:66232298:66232349,	66221781	66221867	66221835	66221835	Frame_Shift_Del	A	-	p.K56fs
STAD	TCGA-CG-4442-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449618	85449618	Frame_Shift_Del	A	-	p.R349fs
STAD	TCGA-CG-4442-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.P138fs
STAD	TCGA-CG-4442-01	PARP4	ENST00000381989.3	chr13	25029154:25029350:25030478:25030616:25033181:25033260,	25030479	25030616	25030500	25030500	Frame_Shift_Del	T	-	p.K847fs
STAD	TCGA-CG-4442-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562675	32562675	Frame_Shift_Del	T	-	p.F934fs
STAD	TCGA-CG-4442-01	RECQL5	ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73624751:73624842:73625013:73625555:73625787:73625922,	73625014	73625555	73625328	73625328	Frame_Shift_Del	C	-	p.G725fs
STAD	TCGA-CG-4442-01	FKBP8	ENST00000453489.2,ENST00000222308.4,ENST00000596558.2	chr19	18648410:18648583:18649025:18649243:18650180:18650258,	18649026	18649243	18649226	18649226	Frame_Shift_Del	G	-	p.P190fs
STAD	TCGA-CG-4442-01	FKBP8	ENST00000608443.1,ENST00000601844.1,ENST00000597960.3	chr19	18648410:18648583:18649025:18649246:18650180:18650258,	18649026	18649246	18649226	18649226	Frame_Shift_Del	G	-	p.P190fs
STAD	TCGA-CG-4442-01	KIF5C	ENST00000464066.1,ENST00000414838.2,ENST00000435030.1,ENST00000397413.1,ENST00000482151.1	chr2	149857235:149857296:149861906:149861978:149864476:149864581,	149861907	149861978	149861973	149861973	Frame_Shift_Del	A	-	p.K814fs
STAD	TCGA-CG-4442-01	GZF1	ENST00000338121.5	chr20	23342818:23342874:23344999:23346384:23347639:23347734,	23345000	23346384	23345195	23345195	Frame_Shift_Del	T	-	p.F59fs
STAD	TCGA-CG-4442-01	BAIAP2L2	ENST00000381669.3,ENST00000332536.5	chr22	38494417:38494489:38503858:38503920:38504261:38504348,	38503859	38503920	38503898	38503899	Frame_Shift_Del	AG	-	p.S79fs
STAD	TCGA-CG-4442-01	DNAH5	ENST00000265104.4	chr5	13841800:13842013:13844945:13845102:13850760:13850924,	13844946	13845102	13845086	13845087	Frame_Shift_Ins	-	T	p.K1710fs
STAD	TCGA-CG-4442-01	C6orf223	ENST00000448947.2	chr6	43968756:43968880:43969789:43969864:43970417:43971142,43968368:43968437:43969789:43969864:43970417:43971142,	43969790	43969864	43969836	43969836	Frame_Shift_Del	C	-	p.H85fs
STAD	TCGA-CG-4442-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20445684:20445794:20449237:20449401:20449497:20449607,	20449238	20449401	20449395	20449395	Frame_Shift_Del	A	-	p.S727fs
STAD	TCGA-CG-4442-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72396799:72397015:72397339:72397501:72398922:72399003,	72397340	72397501	72397426	72397427	Frame_Shift_Ins	-	C	p.L316fs
STAD	TCGA-CG-4442-01	NUP205	ENST00000607647.1,ENST00000285968.6	chr7	135286117:135286255:135287552:135287742:135289087:135289208,	135287553	135287742	135287555	135287555	Frame_Shift_Del	A	-	p.K839fs
STAD	TCGA-CG-4442-01	NOXA1	ENST00000341349.2,ENST00000392815.2	chr9	140327480:140327526:140327656:140327715:140327904:140328059,	140327657	140327715	140327669	140327670	Frame_Shift_Ins	-	G	p.M288fs
STAD	TCGA-CG-4443-01	PDE7A	ENST00000396642.3,ENST00000379419.4,ENST00000401827.3	chr8	66639144:66639201:66639404:66639536:66647028:66647129,	66639405	66639536	66639406	66639415	Frame_Shift_Del	TTGTATAAAG	-	p.T273fs
STAD	TCGA-CG-4449-01	ATP10B	ENST00000521033.1,ENST00000326831.3,ENST00000517802.1,ENST00000327245.5	chr5	160063188:160063316:160067467:160067599:160071144:160071251,	160067468	160067599	160067471	160067472	Frame_Shift_Ins	-	A	p.A332fs
STAD	TCGA-CG-4465-01	DBT	ENST00000370131.3,ENST00000370132.4	chr1	100684181:100684303:100696288:100696470:100700991:100701067,	100696289	100696470	100696362	100696362	Frame_Shift_Del	T	-	p.K120fs
STAD	TCGA-CG-4465-01	SOAT1	ENST00000540564.1	chr1	179292571:179292630:179304640:179304792:179306971:179307031,179271811:179271937:179304640:179304792:179306971:179307031,	179304641	179304792	179304653	179304653	Frame_Shift_Del	T	-	p.F64fs
STAD	TCGA-CG-4465-01	APPL2	ENST00000547809.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000258530.3	chr12	105583768:105583933:105589038:105589127:105589222:105589279,	105589039	105589127	105589059	105589059	Frame_Shift_Del	T	-	p.K407fs
STAD	TCGA-CG-4465-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174185	105174185	Frame_Shift_Del	C	-	p.S527fs
STAD	TCGA-CG-4465-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88665027:88665120:88666198:88666356:88675341:88675459,	88666199	88666356	88666204	88666204	Frame_Shift_Del	A	-	p.L312fs
STAD	TCGA-CG-4465-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788022	17788023	Frame_Shift_Ins	-	T	p.K1115fs
STAD	TCGA-CG-4465-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2	chr8	48843231:48843347:48845579:48845732:48846524:48846650,	48845580	48845732	48845618	48845618	Frame_Shift_Del	C	-	p.D580fs
STAD	TCGA-CG-4466-01	ACSL5	ENST00000369410.3,ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000354655.4	chr10	114170341:114170393:114171213:114171287:114171659:114171737,	114171214	114171287	114171218	114171218	Frame_Shift_Del	C	-	p.D267fs
STAD	TCGA-CG-4469-01	CPS1	ENST00000233072.5,ENST00000451903.2,ENST00000430249.2	chr2	211473084:211473283:211476840:211477017:211481146:211481265,	211476841	211477017	211476868	211476869	Frame_Shift_Del	GA	-	p.E807fs
STAD	TCGA-CG-4477-01	ACVR1B	ENST00000257963.4,ENST00000415850.2,ENST00000542485.1,ENST00000426655.2	chr12	52374752:52374983:52377782:52377950:52378975:52379132,	52377783	52377950	52377884	52377884	Frame_Shift_Del	A	-	p.I305fs
STAD	TCGA-CG-5721-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-CG-5721-01	ADCK5	ENST00000308860.6,ENST00000529654.1,ENST00000526231.2,ENST00000533715.2,ENST00000534714.1	chr8	145603075:145603179:145608281:145608431:145615870:145615946,	145608282	145608431	145608333	145608333	Frame_Shift_Del	G	-	p.V56fs
STAD	TCGA-CG-5721-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L574fs
STAD	TCGA-CG-5721-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.K109fs
STAD	TCGA-CG-5723-01	C1QA	ENST00000438241.1	chr1	22963254:22963353:22964102:22964272:22965325:22965654,	22964103	22964272	22964234	22964234	Frame_Shift_Del	G	-	p.R42fs
STAD	TCGA-CG-5723-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174185	105174185	Frame_Shift_Del	C	-	p.S527fs
STAD	TCGA-CG-5723-01	CD79A	ENST00000221972.3	chr19	42383059:42383359:42383604:42383723:42384736:42384769,	42383605	42383723	42383610	42383610	Frame_Shift_Del	C	-	p.P129fs
STAD	TCGA-CG-5726-01	PLK3	ENST00000465443.1,ENST00000372201.4	chr1	45268626:45268825:45268939:45269063:45269271:45269293,	45268940	45269063	45268997	45268997	Frame_Shift_Del	C	-	p.P336fs
STAD	TCGA-CG-5726-01	CASP7	ENST00000429617.1,ENST00000487232.1,ENST00000369321.2,ENST00000369315.1,ENST00000452490.2,ENST00000369318.3,ENST00000345633.4,ENST00000369331.4	chr10	115480790:115480927:115481409:115481538:115485120:115485188,	115481410	115481538	115481532	115481532	Frame_Shift_Del	A	-	p.K124fs
STAD	TCGA-CG-5726-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805497	125805498	Frame_Shift_Ins	-	C	p.G77fs
STAD	TCGA-CG-5726-01	TRIM5	ENST00000380027.1	chr11	5700303:5700399:5700990:5701468:5706245:5706339,	5700991	5701468	5701141	5701141	Frame_Shift_Del	C	-	p.G89fs
STAD	TCGA-CG-5726-01	DCUN1D5	ENST00000529281.1,ENST00000260247.5,ENST00000531571.1,ENST00000527260.1,ENST00000525420.1	chr11	102937216:102937296:102953476:102953568:102953984:102954055,	102953477	102953568	102953515	102953515	Frame_Shift_Del	A	-	p.F101fs
STAD	TCGA-CG-5726-01	TPCN1	ENST00000552077.1,ENST00000547275.1,ENST00000550873.1,ENST00000335509.6,ENST00000541517.1,ENST00000552985.1,ENST00000550785.1	chr12	113664532:113664769:113698172:113698297:113703984:113704002,	113698173	113698297	113698206	113698206	Frame_Shift_Del	C	-	p.A49fs
STAD	TCGA-CG-5726-01	RTN1	ENST00000432103.2,ENST00000395090.1,ENST00000474911.1,ENST00000267484.5,ENST00000342503.4	chr14	60070569:60070639:60072085:60072224:60074002:60074210,	60072086	60072224	60072086	60072086	Frame_Shift_Del	T	-	p.K704fs
STAD	TCGA-CG-5726-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760502	93760502	Frame_Shift_Del	A	-	p.F288fs
STAD	TCGA-CG-5726-01	ZNF213	ENST00000574575.1	chr16	3187650:3187680:3188418:3188542:3188745:3188819,3187650:3187680:3188418:3188542:3188975:3189099,3187650:3187680:3188418:3188542:3190689:3191356,	3188419	3188542	3188482	3188482	Frame_Shift_Del	C	-	p.P155fs
STAD	TCGA-CG-5726-01	ZNF213	ENST00000576863.1	chr16	3187650:3187680:3188354:3188542:3188745:3188819,	3188355	3188542	3188482	3188482	Frame_Shift_Del	C	-	p.P155fs
STAD	TCGA-CG-5726-01	POU2F2	ENST00000560558.1,ENST00000389341.5,ENST00000526816.2,ENST00000560398.1,ENST00000534559.1	chr19	42596018:42596092:42596220:42596422:42597980:42598047,42595381:42595743:42596220:42596422:42597980:42598047,	42596221	42596422	42596301	42596302	Frame_Shift_Ins	-	G	p.P440fs
STAD	TCGA-CG-5726-01	KIF5C	ENST00000464066.1,ENST00000414838.2,ENST00000435030.1,ENST00000397413.1,ENST00000482151.1	chr2	149857235:149857296:149861906:149861978:149864476:149864581,	149861907	149861978	149861973	149861973	Frame_Shift_Del	A	-	p.K814fs
STAD	TCGA-CG-5726-01	AOX1	ENST00000485965.1,ENST00000374700.2	chr2	201476106:201476216:201477331:201477516:201478526:201478689,	201477332	201477516	201477410	201477410	Frame_Shift_Del	T	-	p.F448fs
STAD	TCGA-CG-5726-01	CHEK2	ENST00000448511.1	chr22	29107896:29108005:29115382:29115473:29120964:29121112,29107896:29108005:29115382:29115473:29120873:29120911,	29115383	29115473	29115460	29115460	Frame_Shift_Del	A	-	p.F202fs
STAD	TCGA-CG-5726-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1,ENST00000341455.6	chr3	56593596:56593622:56597711:56598153:56600621:56600734,	56597712	56598153	56597857	56597857	Frame_Shift_Del	A	-	p.E83fs
STAD	TCGA-CG-5726-01	DNAH12	ENST00000495027.1,ENST00000311202.6,ENST00000351747.2,ENST00000389536.4	chr3	57509529:57509611:57528427:57528630:57529923:57530068,	57528428	57528630	57528532	57528532	Frame_Shift_Del	G	-	p.P22fs
STAD	TCGA-CG-5726-01	DLG1	ENST00000448528.2,ENST00000452595.1,ENST00000419354.1,ENST00000314062.3,ENST00000443183.1,ENST00000392382.2,ENST00000450955.1,ENST00000392381.3,ENST00000447466.1,ENST00000422288.1,ENST00000471733.1,ENST00000346964.2,ENST00000357674.4	chr3	196846280:196846401:196857397:196857542:196863412:196863549,	196857398	196857542	196857450	196857450	Frame_Shift_Del	T	-	p.K404fs
STAD	TCGA-CG-5726-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87688969:87689129:87690921:87691136:87691253:87691352,	87690922	87691136	87691032	87691032	Frame_Shift_Del	A	-	p.K1534fs
STAD	TCGA-CG-5726-01	ZNF827	ENST00000379448.4,ENST00000508784.1,ENST00000513320.1	chr4	146696940:146697112:146700525:146700663:146744573:146744677,	146700526	146700663	146700596	146700596	Frame_Shift_Del	A	-	p.F817fs
STAD	TCGA-CG-5726-01	CTNND2	ENST00000359640.2,ENST00000511377.1,ENST00000304623.8	chr5	11364968:11365002:11384776:11385341:11397142:11397315,	11384777	11385341	11384949	11384949	Frame_Shift_Del	G	-	p.P335fs
STAD	TCGA-CG-5726-01	FOXO3	ENST00000406360.1,ENST00000343882.6	chr6	108882288:108883032:108984657:108986092:109001029:109001954,	108984658	108986092	108985249	108985249	Frame_Shift_Del	G	-	p.G405fs
STAD	TCGA-CG-5726-01	CLVS2	ENST00000368438.1,ENST00000275162.5	chr6	123369766:123369877:123376950:123377171:123384818:123385612,	123376951	123377171	123376954	123376954	Frame_Shift_Del	T	-	p.F227fs
STAD	TCGA-CG-5726-01	NAMPT	ENST00000491027.1,ENST00000354289.4,ENST00000222553.3	chr7	105903837:105904063:105908909:105909046:105909599:105909651,	105908910	105909046	105908966	105908966	Frame_Shift_Del	T	-	p.K229fs
STAD	TCGA-CG-5733-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128510	202128510	Frame_Shift_Del	C	-	p.G7fs
STAD	TCGA-CG-5733-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128510	202128510	Frame_Shift_Del	C	-	p.G7fs
STAD	TCGA-CG-5733-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128510	202128510	Frame_Shift_Del	C	-	p.G7fs
STAD	TCGA-CG-5733-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-CG-5733-01	CTNND1	ENST00000428599.2,ENST00000526938.1	chr11	57529268:57529518:57558856:57559145:57561481:57561553,	57558857	57559145	57558992	57558993	Frame_Shift_Del	CT	-	p.A14fs
STAD	TCGA-CG-5733-01	CTNND1	ENST00000530748.1,ENST00000529873.1,ENST00000528621.1,ENST00000526357.1,ENST00000532844.1	chr11	57529268:57529518:57558965:57559145:57561481:57561553,	57558966	57559145	57558992	57558993	Frame_Shift_Del	CT	-	p.A14fs
STAD	TCGA-CG-5733-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789629	3789629	Frame_Shift_Del	A	-	p.F1410fs
STAD	TCGA-CG-5733-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000601032.1,ENST00000243562.9,ENST00000396819.3,ENST00000308370.7,ENST00000545697.1,ENST00000318809.7,ENST00000601209.1,ENST00000598677.1,ENST00000595118.1,ENST00000602240.1	chr19	41131761:41131914:41132879:41133260:41133609:41133625,	41132880	41133260	41132911	41132911	Frame_Shift_Del	C	-	p.R1406fs
STAD	TCGA-CG-5733-01	IGFBP7	ENST00000295666.4,ENST00000537922.1	chr4	57899360:57899477:57906989:57907099:57976042:57976112,	57906990	57907099	57907077	57907077	Frame_Shift_Del	G	-	p.P166fs
STAD	TCGA-D7-6524-01	HSPG2	ENST00000374695.3	chr1	22192209:22192302:22198678:22198870:22199112:22199253,	22198679	22198870	22198725	22198725	Frame_Shift_Del	T	-	p.H1392fs
STAD	TCGA-D7-6526-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573993	7573994	Frame_Shift_Ins	-	TCAGC	p.N345fs
STAD	TCGA-D7-6527-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579585	7579585	Frame_Shift_Del	G	-	p.P34fs
STAD	TCGA-D7-6818-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577090	7577096	Frame_Shift_Del	CGCCGGT	-	p.D281fs
STAD	TCGA-D7-A4YT-01	RCN1	ENST00000533898.1,ENST00000532942.1,ENST00000054950.3	chr11	32122093:32122154:32124826:32125026:32125910:32126148,	32124827	32125026	32124954	32124972	Frame_Shift_Del	GATCCTCCCTCAAGATTAT	-	p.W272fs
STAD	TCGA-D7-A4YT-01	RNF43	ENST00000583753.1,ENST00000577716.1,ENST00000500597.2,ENST00000584437.1,ENST00000581868.1,ENST00000577625.1,ENST00000407977.2	chr17	56439904:56440009:56440635:56440767:56440886:56440953,	56440636	56440767	56440698	56440720	Frame_Shift_Del	CCATCAGCTTCTCAGCGTCATTA	-	p.G166fs
STAD	TCGA-D7-A4YV-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88452624:88452797:88453674:88453797:88454606:88454771,	88453675	88453797	88453675	88453675	Frame_Shift_Del	T	-	p.K2215fs
STAD	TCGA-D7-A4YV-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612536	13612536	Frame_Shift_Del	C	-	p.G227fs
STAD	TCGA-D7-A4YX-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101189	27101196	Frame_Shift_Del	GTTGCTCA	-	p.V1491fs
STAD	TCGA-D7-A4YY-01	ENDOU	ENST00000229003.3,ENST00000422538.3,ENST00000545824.2	chr12	48105415:48105558:48106298:48106405:48107057:48107171,	48106299	48106405	48106392	48106392	Frame_Shift_Del	T	-	p.K293fs
STAD	TCGA-D7-A4YY-01	KNTC1	ENST00000333479.7	chr12	123026596:123026674:123028146:123028181:123028705:123028816,	123028147	123028181	123028174	123028175	Frame_Shift_Ins	-	A	p.A184fs
STAD	TCGA-D7-A4YY-01	DOCK6	ENST00000294618.7	chr19	11354477:11354558:11356238:11356388:11356487:11356554,	11356239	11356388	11356341	11356341	Frame_Shift_Del	C	-	p.G307fs
STAD	TCGA-D7-A4YY-01	JAZF1	ENST00000430432.1,ENST00000283928.5,ENST00000447620.1	chr7	27880387:27880486:27934838:27935035:28031527:28031600,	27934839	27935035	27934891	27934891	Frame_Shift_Del	G	-	p.P111fs
STAD	TCGA-EQ-8122-01	DHRS7	ENST00000216500.5,ENST00000536410.2,ENST00000557185.1	chr14	60611523:60611731:60616070:60616286:60616782:60616835,	60616071	60616286	60616089	60616089	Frame_Shift_Del	C	-	p.E318fs
STAD	TCGA-EQ-A4SO-01	GAPDH	ENST00000396861.1,ENST00000396859.1,ENST00000396856.1,ENST00000474249.1,ENST00000396858.1,ENST00000229239.5,ENST00000466588.1	chr12	6646474:6646556:6646749:6647162:6647266:6647283,	6646750	6647162	6647143	6647156	Frame_Shift_Del	TTTGTCAAGCTCAT	-	p.F307fs
STAD	TCGA-F1-6177-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097622	27097622	Frame_Shift_Del	A	-	p.K1071fs
STAD	TCGA-F1-6177-01	NEK7	ENST00000367385.4,ENST00000538004.1,ENST00000391974.3	chr1	198201682:198201767:198222169:198222310:198231704:198231753,	198222170	198222310	198222297	198222298	Frame_Shift_Ins	-	A	p.L62fs
STAD	TCGA-F1-6177-01	DOCK1	ENST00000280333.6	chr10	129242389:129242543:129245657:129245809:129249595:129250781,	129245658	129245809	129245705	129245705	Frame_Shift_Del	C	-	p.P1800fs
STAD	TCGA-F1-6177-01	RIN1	ENST00000311320.4	chr11	66103232:66103347:66103448:66103629:66103787:66103877,	66103449	66103629	66103453	66103453	Frame_Shift_Del	G	-	p.P88fs
STAD	TCGA-F1-6177-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121040	95121040	Frame_Shift_Del	A	-	p.F185fs
STAD	TCGA-F1-6177-01	THTPA	ENST00000554970.1	chr14	24025479:24025552:24025951:24026243:24027903:24028068,	24025952	24026243	24026212	24026213	Frame_Shift_Del	CA	-	p.L82fs
STAD	TCGA-F1-6177-01	THTPA	ENST00000556015.1	chr14	24025479:24025552:24025951:24026248:24027903:24028068,	24025952	24026248	24026212	24026213	Frame_Shift_Del	CA	-	p.L82fs
STAD	TCGA-F1-6177-01	AXIN1	ENST00000354866.3,ENST00000262320.3	chr16	364542:364683:396147:397106:402368:402449,	396148	397106	396234	396234	Frame_Shift_Del	G	-	p.P264fs
STAD	TCGA-F1-6177-01	USP10	ENST00000567526.1	chr16	84801872:84801964:84806146:84806291:84808765:84808831,84801872:84801964:84806146:84806291:84812500:84812593,	84806147	84806291	84806174	84806175	Frame_Shift_Ins	-	A	p.E676fs
STAD	TCGA-F1-6177-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796827	7796827	Frame_Shift_Del	C	-	p.P245fs
STAD	TCGA-F1-6177-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602375.1,ENST00000582377.1,ENST00000602811.1,ENST00000582183.1,ENST00000579089.1,ENST00000602305.1,ENST00000581941.1,ENST00000602537.1	chr17	11998918:11999011:12011106:12011226:12013691:12013743,	12011107	12011226	12011155	12011155	Frame_Shift_Del	T	-	p.F188fs
STAD	TCGA-F1-6177-01	OCEL1	ENST00000594283.1,ENST00000597836.1,ENST00000596279.1,ENST00000598172.1,ENST00000598068.1,ENST00000600232.1,ENST00000215061.4	chr19	17337966:17338008:17338648:17338814:17339064:17339118,	17338649	17338814	17338803	17338803	Frame_Shift_Del	C	-	p.P203fs
STAD	TCGA-F1-6177-01	ITSN2	ENST00000361999.3	chr2	24498581:24498718:24509080:24509220:24516556:24516644,	24509081	24509220	24509095	24509096	Frame_Shift_Ins	-	A	p.F616fs
STAD	TCGA-F1-6177-01	MED15	ENST00000489651.1,ENST00000263205.7	chr22	20922852:20922918:20936897:20937034:20937126:20937254,20929399:20929519:20936897:20937034:20937126:20937254,	20936898	20937034	20936976	20936976	Frame_Shift_Del	C	-	p.P451fs
STAD	TCGA-F1-6177-01	SH3BP1	ENST00000357436.4,ENST00000495174.1,ENST00000469947.1,ENST00000451997.1,ENST00000599616.1,ENST00000442465.2,ENST00000471650.1,ENST00000336738.5,ENST00000417536.1	chr22	38041408:38041517:38042824:38042936:38043273:38043298,	38042825	38042936	38042889	38042890	Frame_Shift_Ins	-	C	p.D330fs
STAD	TCGA-F1-6177-01	SRGAP3	ENST00000383836.3	chr3	9069783:9069814:9074333:9074436:9079746:9079774,9068618:9068679:9074333:9074436:9079746:9079774,	9074334	9074436	9074429	9074430	Frame_Shift_Ins	-	G	p.P481fs
STAD	TCGA-F1-6177-01	METTL6	ENST00000383790.3,ENST00000443029.1,ENST00000450816.2	chr3	15452842:15452944:15455527:15455669:15457004:15457090,15452842:15452944:15455527:15455669:15456236:15456421,15452842:15452944:15455527:15455669:15457278:15457367,	15455528	15455669	15455535	15455535	Frame_Shift_Del	A	-	p.F222fs
STAD	TCGA-F1-6177-01	EIF5A2	ENST00000295822.2,ENST00000474417.1	chr3	170612080:170612212:170624777:170624882:170625430:170625588,	170624778	170624882	170624844	170624844	Frame_Shift_Del	T	-	p.K68fs
STAD	TCGA-F1-6177-01	TRPC7	ENST00000513104.1	chr5	135601907:135602124:135610360:135610525:135692295:135693073,135601907:135602124:135610360:135610525:135651284:135651467,	135610361	135610525	135610472	135610473	Frame_Shift_Ins	-	T	p.N338fs
STAD	TCGA-F1-6177-01	TRPC7	ENST00000503275.1	chr5	135601907:135602124:135610344:135610525:135651284:135651467,	135610345	135610525	135610472	135610473	Frame_Shift_Ins	-	T	p.N338fs
STAD	TCGA-F1-6177-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96859602:96860861:96863847:96864033:96866556:96866667,	96863848	96864033	96864016	96864017	Frame_Shift_Ins	-	T	p.L674fs
STAD	TCGA-F1-6874-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261079	151261079	Frame_Shift_Del	C	-	p.P731fs
STAD	TCGA-F1-6874-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-F1-6874-01	LPCAT3	ENST00000261407.4,ENST00000536797.1,ENST00000543794.1	chr12	7091836:7091943:7092592:7092700:7125577:7125778,	7092593	7092700	7092599	7092600	Frame_Shift_Ins	-	A	p.F84fs
STAD	TCGA-F1-6874-01	COLEC12	ENST00000400256.3	chr18	333006:333143:334741:335230:346294:347341,	334742	335230	334972	334972	Frame_Shift_Del	G	-	p.P529fs
STAD	TCGA-F1-6874-01	TFDP2	ENST00000475734.1	chr3	141712414:141712427:141724282:141724386:141747420:141747439,141713937:141713983:141724282:141724386:141811902:141811969,141713937:141713983:141724282:141724386:141772956:141772991,141713937:141713983:141724282:141724386:141747420:141747439,141713937:141713983:141724282:141724386:141868024:141868302,	141724283	141724386	141724321	141724321	Frame_Shift_Del	T	-	p.T50fs
STAD	TCGA-F1-6874-01	ARHGEF10	ENST00000522435.1,ENST00000520359.1,ENST00000518288.1,ENST00000398564.1,ENST00000349830.3,ENST00000523711.1,ENST00000262112.6	chr8	1846601:1846691:1851446:1851617:1853736:1853882,	1851447	1851617	1851547	1851548	Frame_Shift_Del	AG	-	p.K584fs
STAD	TCGA-F1-6874-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.G73fs
STAD	TCGA-F1-6874-01	C5	ENST00000223642.1	chr9	123751845:123752058:123753468:123753558:123758517:123758578,	123753469	123753558	123753470	123753470	Frame_Shift_Del	T	-	p.K980fs
STAD	TCGA-FP-8211-01	KIAA1841	ENST00000453873.1,ENST00000356719.2,ENST00000295031.5,ENST00000453186.1,ENST00000402291.1	chr2	61319598:61319722:61324834:61324987:61330987:61331088,	61324835	61324987	61324903	61324913	Frame_Shift_Del	AAGTTCATTGA	-	p.A427fs
STAD	TCGA-FP-A4BE-01	ASPG	ENST00000546892.2	chr14	104573566:104573682:104575565:104575652:104578256:104578337,	104575566	104575652	104575600	104575600	Frame_Shift_Del	G	-	p.G490fs
STAD	TCGA-FP-A4BE-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579802	2579802	Frame_Shift_Del	A	-	p.K302fs
STAD	TCGA-FP-A4BE-01	UPF1	ENST00000600689.1,ENST00000262803.5,ENST00000599848.1,ENST00000596842.1	chr19	18974246:18974421:18974978:18975060:18976097:18976259,	18974979	18975060	18975059	18975059	Frame_Shift_Del	G	-	p.Q963fs
STAD	TCGA-FP-A4BE-01	NCAN	ENST00000538881.1,ENST00000252575.6	chr19	19356121:19356266:19359508:19359691:19360574:19360738,	19359509	19359691	19359520	19359520	Frame_Shift_Del	C	-	p.P1217fs
STAD	TCGA-FP-A4BE-01	TSKS	ENST00000246801.3,ENST00000358830.3	chr19	50247487:50247661:50248458:50248653:50249726:50250055,	50248459	50248653	50248607	50248607	Frame_Shift_Del	C	-	p.A347fs
STAD	TCGA-FP-A4BE-01	SRC	ENST00000360723.4,ENST00000445403.1,ENST00000358208.4	chr20	36011091:36011189:36012552:36012806:36014477:36014577,	36012553	36012806	36012784	36012784	Frame_Shift_Del	G	-	p.P76fs
STAD	TCGA-FP-A4BE-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788023	Frame_Shift_Del	T	-	p.K1115fs
STAD	TCGA-FP-A4BE-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631681	116631682	Frame_Shift_Ins	-	T	p.T202fs
STAD	TCGA-HF-7132-01	SULF2	ENST00000437955.1	chr20	46365446:46365686:46385932:46386207:46414791:46415298,46365446:46365686:46385932:46386207:46414086:46414233,	46385933	46386207	46386103	46386103	Frame_Shift_Del	C	-	p.G2fs
STAD	TCGA-HF-7132-01	TRERF1	ENST00000340840.2,ENST00000372917.4,ENST00000354325.2	chr6	42225872:42225939:42227076:42227461:42232441:42232592,	42227077	42227461	42227226	42227226	Frame_Shift_Del	G	-	p.P707fs
STAD	TCGA-HF-7136-01	PHTF1	ENST00000447664.2	chr1	114255900:114256060:114267380:114267515:114269039:114269080,114254561:114254735:114267380:114267515:114269039:114269080,	114267381	114267515	114267498	114267499	Frame_Shift_Del	AC	-	p.V169fs
STAD	TCGA-HF-7136-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292809	98292810	Frame_Shift_Ins	-	T	p.K441fs
STAD	TCGA-HF-7136-01	WBP4	ENST00000379487.3	chr13	41636779:41636852:41639151:41639214:41639299:41639423,	41639152	41639214	41639174	41639177	Frame_Shift_Del	GAAA	-	p.G33fs
STAD	TCGA-HF-7136-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971024	21971024	Frame_Shift_Del	G	-	p.R112fs
STAD	TCGA-HF-7136-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971024	21971024	Frame_Shift_Del	G	-	p.R112fs
STAD	TCGA-HJ-7597-01	IGSF9	ENST00000476102.1,ENST00000496645.1,ENST00000361509.3,ENST00000368094.1	chr1	159897549:159897677:159897947:159898808:159899140:159899183,	159897948	159898808	159898247	159898247	Frame_Shift_Del	G	-	p.P977fs
STAD	TCGA-HJ-7597-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560445	32560445	Frame_Shift_Del	A	-	p.S190fs
STAD	TCGA-HJ-7597-01	C16orf74	ENST00000602675.1	chr16	85741259:85741672:85743769:85743891:85768795:85768841,	85743770	85743891	85743813	85743813	Frame_Shift_Del	G	-	p.P43fs
STAD	TCGA-HJ-7597-01	C16orf74	ENST00000602719.1	chr16	85741259:85741672:85743769:85743913:85768795:85768841,85723775:85724383:85743769:85743913:85768795:85768841,	85743770	85743913	85743813	85743813	Frame_Shift_Del	G	-	p.P43fs
STAD	TCGA-HJ-7597-01	CDK12	ENST00000584632.1,ENST00000430627.2,ENST00000447079.4	chr17	37627766:37628016:37646809:37646986:37649003:37649143,	37646810	37646986	37646922	37646922	Frame_Shift_Del	C	-	p.P682fs
STAD	TCGA-HJ-7597-01	NOL11	ENST00000253247.4,ENST00000580833.1	chr17	65717565:65717642:65718695:65718753:65720164:65720309,	65718696	65718753	65718702	65718703	Frame_Shift_Del	AA	-	p.T156fs
STAD	TCGA-HJ-7597-01	CNOT6	ENST00000393356.1,ENST00000504343.1,ENST00000261951.4	chr5	179991674:179991743:179992819:179992977:179994087:179994242,	179992820	179992977	179992921	179992921	Frame_Shift_Del	A	-	p.K221fs
STAD	TCGA-HU-8602-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091508	204091508	Frame_Shift_Del	C	-	p.S335fs
STAD	TCGA-HU-8602-01	SBNO1	ENST00000267176.4,ENST00000602750.1,ENST00000420886.2,ENST00000602398.1	chr12	123795601:123795676:123798166:123798266:123799919:123799991,	123798167	123798266	123798171	123798171	Frame_Shift_Del	A	-	p.F1072fs
STAD	TCGA-HU-8602-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174185	105174185	Frame_Shift_Del	C	-	p.S527fs
STAD	TCGA-HU-8602-01	CSF3	ENST00000225474.2	chr17	38171698:38171767:38171943:38172107:38172485:38172593,	38171944	38172107	38171995	38171995	Frame_Shift_Del	C	-	p.T31fs
STAD	TCGA-HU-8602-01	CSF3	ENST00000394149.3	chr17	38171698:38171767:38171943:38172098:38172485:38172593,	38171944	38172098	38171995	38171995	Frame_Shift_Del	C	-	p.T31fs
STAD	TCGA-HU-8602-01	ATP8B3	ENST00000531925.1,ENST00000310127.6,ENST00000539485.1,ENST00000525591.1	chr19	1784817:1784945:1785157:1785296:1785467:1785707,	1785158	1785296	1785177	1785177	Frame_Shift_Del	G	-	p.P1171fs
STAD	TCGA-HU-8602-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977878	99977878	Frame_Shift_Del	A	-	p.K172fs
STAD	TCGA-HU-A4G8-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-HU-A4G8-01	CTSC	ENST00000529974.1,ENST00000393301.4,ENST00000524463.1	chr11	88061279:88061364:88068104:88068250:88070668:88070868,	88068105	88068250	88068108	88068108	Frame_Shift_Del	A	-	p.F105fs
STAD	TCGA-HU-A4G8-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102848	61102848	Frame_Shift_Del	A	-	p.K404fs
STAD	TCGA-HU-A4G8-01	BCAR1	ENST00000569340.1	chr16	75269565:75269884:75271080:75271242:75276367:75276460,	75271081	75271242	75271108	75271108	Frame_Shift_Del	C	-	p.G256fs
STAD	TCGA-HU-A4G8-01	PIK3C3	ENST00000588156.1,ENST00000593098.1,ENST00000262039.4,ENST00000398870.3	chr18	39629494:39629569:39644703:39644794:39647351:39647374,39637846:39638015:39644703:39644794:39647351:39647374,	39644704	39644794	39644789	39644789	Frame_Shift_Del	A	-	p.K840fs
STAD	TCGA-HU-A4G8-01	REL	ENST00000394479.3	chr2	61147175:61147244:61147708:61147777:61148897:61150119,	61147709	61147777	61147771	61147771	Frame_Shift_Del	A	-	p.K361fs
STAD	TCGA-HU-A4G8-01	OGDH	ENST00000222673.5,ENST00000443864.2	chr7	44687255:44687358:44706334:44706450:44713385:44713540,	44706335	44706450	44706400	44706400	Frame_Shift_Del	G	-	p.G195fs
STAD	TCGA-HU-A4G8-01	PTPRZ1	ENST00000393386.2	chr7	121671527:121671613:121674148:121674169:121674335:121674394,	121674149	121674169	121674154	121674157	Frame_Shift_Del	GAAA	-	p.L1724fs
STAD	TCGA-HU-A4G8-01	SH3GLB2	ENST00000372559.1,ENST00000372564.3,ENST00000416629.1,ENST00000461811.1	chr9	131770962:131771070:131771384:131771625:131771731:131771746,131770995:131771070:131771384:131771625:131772049:131772150,	131771385	131771625	131771467	131771467	Frame_Shift_Del	G	-	p.P333fs
STAD	TCGA-HU-A4G9-01	RPRD2	ENST00000401000.4,ENST00000539519.1,ENST00000492220.1,ENST00000369068.4	chr1	150416726:150416853:150418701:150418877:150429763:150430046,	150418702	150418877	150418791	150418791	Frame_Shift_Del	A	-	p.K262fs
STAD	TCGA-HU-A4G9-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371335	240371335	Frame_Shift_Del	C	-	p.P1075fs
STAD	TCGA-HU-A4G9-01	ENDOU	ENST00000229003.3,ENST00000422538.3,ENST00000545824.2	chr12	48105415:48105558:48106298:48106405:48107057:48107171,	48106299	48106405	48106392	48106392	Frame_Shift_Del	T	-	p.K293fs
STAD	TCGA-HU-A4G9-01	ASB2	ENST00000555507.1,ENST00000555019.1,ENST00000315988.4	chr14	94404064:94404197:94405453:94406018:94413694:94413866,	94405454	94406018	94405856	94405857	Frame_Shift_Del	GC	-	p.R357fs
STAD	TCGA-HU-A4G9-01	SEMA4B	ENST00000559074.1,ENST00000332496.6,ENST00000411539.2,ENST00000560089.1,ENST00000558065.1,ENST00000379122.3	chr15	90764981:90764997:90766790:90766972:90767069:90767154,	90766791	90766972	90766838	90766841	Frame_Shift_Del	CCTC	-	p.F303fs
STAD	TCGA-HU-A4G9-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000396819.3,ENST00000598717.1,ENST00000308370.7,ENST00000545697.1,ENST00000601209.1,ENST00000602240.1	chr19	41117279:41117300:41117764:41117890:41117978:41118098,	41117765	41117890	41117787	41117787	Frame_Shift_Del	C	-	p.S759fs
STAD	TCGA-HU-A4G9-01	PVR	ENST00000406449.4,ENST00000425690.3,ENST00000403059.4,ENST00000344956.4,ENST00000187830.2	chr19	45150571:45150842:45153080:45153377:45157168:45157286,	45153081	45153377	45153247	45153248	Frame_Shift_Del	CA	-	p.G198fs
STAD	TCGA-HU-A4G9-01	PRR12	ENST00000418929.2	chr19	50097953:50101270:50102528:50103195:50104747:50105175,	50102529	50103195	50102880	50102880	Frame_Shift_Del	G	-	p.G1344fs
STAD	TCGA-HU-A4G9-01	COL18A1	ENST00000359759.4,ENST00000459895.1,ENST00000342220.5,ENST00000355480.5,ENST00000400337.2	chr21	46915271:46915346:46916413:46916482:46916963:46917006,	46916414	46916482	46916425	46916425	Frame_Shift_Del	C	-	p.G1255fs
STAD	TCGA-HU-A4G9-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300311	18300311	Frame_Shift_Del	G	-	p.R1706fs
STAD	TCGA-HU-A4G9-01	L3MBTL2	ENST00000481902.1	chr22	41605699:41605937:41609854:41610030:41612142:41612266,	41609855	41610030	41609902	41609903	Frame_Shift_Del	TG	-	p.C90fs
STAD	TCGA-HU-A4G9-01	L3MBTL2	ENST00000479978.1,ENST00000450939.1,ENST00000452106.1,ENST00000216237.5,ENST00000466589.1,ENST00000489136.1	chr22	41605699:41605937:41609896:41610030:41612142:41612266,	41609897	41610030	41609902	41609903	Frame_Shift_Del	TG	-	p.C90fs
STAD	TCGA-HU-A4G9-01	LRRC31	ENST00000264676.5	chr3	169578348:169578516:169579457:169579601:169587420:169587621,169574492:169574660:169579457:169579601:169587420:169587621,	169579458	169579601	169579523	169579523	Frame_Shift_Del	T	-	p.K85fs
STAD	TCGA-HU-A4G9-01	MCC	ENST00000506605.2	chr5	112478914:112479057:112487005:112487119:112676215:112676427,112478914:112479057:112487005:112487119:112630025:112630635,112478914:112479057:112487005:112487119:112538933:112539014,	112487006	112487119	112487025	112487025	Frame_Shift_Del	T	-	p.K51fs
STAD	TCGA-HU-A4G9-01	TAF6	ENST00000453269.2,ENST00000421980.1,ENST00000418432.2,ENST00000472509.1,ENST00000344095.4,ENST00000452041.1,ENST00000437822.2	chr7	99705548:99705746:99705989:99706163:99707570:99707660,	99705990	99706163	99706154	99706155	Frame_Shift_Del	CA	-	p.C431fs
STAD	TCGA-HU-A4G9-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000380432.2,ENST00000602925.1	chr9	19316618:19316837:19324359:19324505:19325936:19325972,	19324360	19324505	19324482	19324482	Frame_Shift_Del	T	-	p.F408fs
STAD	TCGA-HU-A4GC-01	GMPS	ENST00000496455.2,ENST00000295920.7	chr3	155637021:155637127:155639975:155640091:155643029:155643155,	155639976	155640091	155640046	155640046	Frame_Shift_Del	C	-	p.N463fs
STAD	TCGA-HU-A4GF-01	CRTAP	ENST00000449224.1	chr3	33155545:33156040:33161835:33161985:33165899:33166071,	33161836	33161985	33161979	33161980	Frame_Shift_Del	AT	-	p.S205fs
STAD	TCGA-HU-A4GH-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000533917.1,ENST00000396085.1,ENST00000311043.8,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20119122:20119291:20122482:20122718:20124800:20124955,	20122483	20122718	20122681	20122681	Frame_Shift_Del	T	-	p.V2130fs
STAD	TCGA-HU-A4GP-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190282	72190283	Frame_Shift_Del	TC	-	p.D1521fs
STAD	TCGA-HU-A4GQ-01	RAB3GAP2	ENST00000358951.2	chr1	220335539:220335610:220338074:220338141:220340634:220340741,	220338075	220338141	220338127	220338127	Frame_Shift_Del	A	-	p.F1034fs
STAD	TCGA-HU-A4GQ-01	ZMYM5	ENST00000535942.1	chr13	20409616:20409829:20411795:20411961:20412839:20413125,20409616:20409829:20411795:20411961:20425494:20425588,	20411796	20411961	20411844	20411844	Frame_Shift_Del	T	-	p.K330fs
STAD	TCGA-HU-A4GQ-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579802	2579802	Frame_Shift_Del	A	-	p.K302fs
STAD	TCGA-HU-A4GQ-01	PTP4A3	ENST00000520105.1,ENST00000349124.1	chr8	142435147:142435240:142437038:142437169:142441026:142441394,	142437039	142437169	142437063	142437063	Frame_Shift_Del	C	-	p.P75fs
STAD	TCGA-HU-A4GQ-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L574fs
STAD	TCGA-HU-A4GQ-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.K109fs
STAD	TCGA-HU-A4GQ-01	ARHGAP4	ENST00000393721.1,ENST00000350060.5,ENST00000494302.1,ENST00000537206.1,ENST00000370028.3,ENST00000370016.1,ENST00000420383.1,ENST00000470209.1,ENST00000404127.2	chrX	153176582:153176643:153178153:153178256:153178477:153178505,	153178154	153178256	153178181	153178182	Frame_Shift_Del	AA	-	p.F505fs
STAD	TCGA-HU-A4GT-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39797891	39797892	Frame_Shift_Ins	-	A	p.H317fs
STAD	TCGA-HU-A4GT-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204210502:204210609:204210812:204210942:204213991:204214131,	204210813	204210942	204210879	204210880	Frame_Shift_Ins	-	G	p.P745fs
STAD	TCGA-HU-A4GT-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-HU-A4GT-01	SMPD1	ENST00000533123.1	chr11	6411811:6412146:6412613:6413386:6414846:6414923,	6412614	6413386	6412854	6412854	Frame_Shift_Del	C	-	p.P187fs
STAD	TCGA-HU-A4GT-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
STAD	TCGA-HU-A4GT-01	PHLDB1	ENST00000356063.5,ENST00000530994.1,ENST00000528594.1,ENST00000361417.2	chr11	118495649:118495775:118498020:118499366:118501923:118502196,	118498021	118499366	118498911	118498911	Frame_Shift_Del	C	-	p.P458fs
STAD	TCGA-HU-A4GT-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88452624:88452797:88453674:88453797:88454606:88454771,	88453675	88453797	88453675	88453675	Frame_Shift_Del	T	-	p.K2215fs
STAD	TCGA-HU-A4GT-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878534	89878534	Frame_Shift_Del	G	-	p.P96fs
STAD	TCGA-HU-A4GT-01	RAVER1	ENST00000592208.1,ENST00000293677.6	chr19	10433320:10433415:10433820:10433950:10434050:10434242,	10433821	10433950	10433828	10433828	Frame_Shift_Del	C	-	p.G374fs
STAD	TCGA-HU-A4GT-01	AP1M2	ENST00000250244.6,ENST00000592285.1,ENST00000590923.1	chr19	10685092:10685168:10685579:10685705:10687873:10687907,	10685580	10685705	10685628	10685628	Frame_Shift_Del	G	-	p.P375fs
STAD	TCGA-HU-A4GT-01	KLC3	ENST00000585434.1,ENST00000391946.2,ENST00000494686.1	chr19	45844031:45844104:45848791:45849057:45849801:45850015,	45848792	45849057	45848996	45848996	Frame_Shift_Del	A	-	p.E66fs
STAD	TCGA-HU-A4GT-01	KLC3	ENST00000589837.1	chr19	45844031:45844104:45848791:45849009:45849801:45850015,	45848792	45849009	45848996	45848996	Frame_Shift_Del	A	-	p.E66fs
STAD	TCGA-HU-A4GT-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14488155	14488156	Frame_Shift_Ins	-	CC	p.F2473fs
STAD	TCGA-HU-A4GT-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
STAD	TCGA-HU-A4GT-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
STAD	TCGA-HU-A4GT-01	CSGALNACT1	ENST00000397998.3,ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000519222.1	chr8	19315936:19316153:19362711:19363641:19459281:19459376,	19362712	19363641	19363162	19363163	Frame_Shift_Ins	-	A	p.L61fs
STAD	TCGA-HU-A4GT-01	DIAPH2	ENST00000373054.4	chrX	95939710:95940189:95993584:95993761:96013152:96013257,	95993585	95993761	95993621	95993621	Frame_Shift_Del	A	-	p.K68fs
STAD	TCGA-HU-A4GU-01	CDK18	ENST00000462976.1	chr1	205473929:205474006:205492274:205492753:205493359:205493457,	205492275	205492753	205492639	205492639	Frame_Shift_Del	C	-	p.D53fs
STAD	TCGA-HU-A4GU-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282887	47282887	Frame_Shift_Del	C	-	p.P199fs
STAD	TCGA-HU-A4GU-01	CCDC38	ENST00000344280.3	chr12	96284609:96284708:96288766:96288924:96292162:96292243,	96288767	96288924	96288870	96288870	Frame_Shift_Del	A	-	p.F223fs
STAD	TCGA-HU-A4GU-01	KLHDC4	ENST00000567298.1,ENST00000347925.5,ENST00000270583.5,ENST00000561825.1	chr16	87788803:87788898:87790004:87790083:87795554:87795622,	87790005	87790083	87790005	87790005	Frame_Shift_Del	T	-	p.K90fs
STAD	TCGA-HU-A4GU-01	KLHDC4	ENST00000566661.1	chr16	87782404:87782415:87788799:87790083:87795554:87795622,	87788800	87790083	87790005	87790005	Frame_Shift_Del	T	-	p.K90fs
STAD	TCGA-HU-A4GU-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696630	17696630	Frame_Shift_Del	C	-	p.A123fs
STAD	TCGA-HU-A4GU-01	NBEAL2	ENST00000292309.5,ENST00000383740.2,ENST00000416683.1,ENST00000450053.3,ENST00000443829.1	chr3	47045984:47046080:47046461:47046586:47046670:47046811,	47046462	47046586	47046463	47046464	Frame_Shift_Ins	-	C	p.F2099fs
STAD	TCGA-HU-A4GU-01	PIK3CB	ENST00000462898.1,ENST00000289153.2,ENST00000477593.1,ENST00000493568.1	chr3	138426000:138426131:138431049:138431146:138433309:138433328,	138431050	138431146	138431111	138431111	Frame_Shift_Del	A	-	p.F446fs
STAD	TCGA-HU-A4GU-01	BST1	ENST00000265016.4,ENST00000514989.1,ENST00000505785.1,ENST00000514445.1,ENST00000382346.3	chr4	15716950:15716984:15717329:15717422:15720529:15720616,	15717330	15717422	15717330	15717330	Frame_Shift_Del	T	-	p.G204fs
STAD	TCGA-HU-A4GU-01	ZMIZ2	ENST00000309315.4,ENST00000433667.1,ENST00000441627.1	chr7	44798879:44799059:44799749:44799827:44800023:44800192,	44799750	44799827	44799789	44799789	Frame_Shift_Del	G	-	p.G345fs
STAD	TCGA-HU-A4GU-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L574fs
STAD	TCGA-HU-A4GU-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982957	40982957	Frame_Shift_Del	C	-	p.P26fs
STAD	TCGA-HU-A4GX-01	KDM5A	ENST00000382815.4,ENST00000399788.2,ENST00000544760.1	chr12	431582:431733:432247:432372:432765:432947,	432248	432372	432249	432249	Frame_Shift_Del	T	-	p.K758fs
STAD	TCGA-HU-A4GX-01	LRRC49	ENST00000559806.1,ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558808.1,ENST00000558456.1,ENST00000560107.2,ENST00000561081.1,ENST00000560980.1,ENST00000260382.5,ENST00000443425.2,ENST00000560691.1	chr15	71256123:71256271:71272439:71272523:71276432:71276544,	71272440	71272523	71272472	71272473	Frame_Shift_Ins	-	A	p.A318fs
STAD	TCGA-HU-A4GX-01	MED15	ENST00000489651.1,ENST00000263205.7	chr22	20922852:20922918:20936897:20937034:20937126:20937254,20929399:20929519:20936897:20937034:20937126:20937254,	20936898	20937034	20936976	20936976	Frame_Shift_Del	C	-	p.P451fs
STAD	TCGA-HU-A4H0-01	DSG2	ENST00000261590.8,ENST00000585206.1	chr18	29099765:29099900:29100765:29100927:29101061:29101206,	29100766	29100927	29100918	29100919	Frame_Shift_Ins	-	T	p.P123fs
STAD	TCGA-HU-A4H3-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63486964	63486967	Frame_Shift_Del	TGAT	-	p.N330fs
STAD	TCGA-HU-A4H3-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63486964	63486967	Frame_Shift_Del	TGAT	-	p.N330fs
STAD	TCGA-HU-A4H3-01	UPF3A	ENST00000484246.1,ENST00000375299.3	chr13	115048380:115048418:115051776:115051875:115051993:115052104,	115051777	115051875	115051799	115051800	Frame_Shift_Del	AG	-	p.V148fs
STAD	TCGA-HU-A4H3-01	UPF3A	ENST00000493727.1	chr13	115048353:115048418:115051733:115051875:115051993:115052104,	115051734	115051875	115051799	115051800	Frame_Shift_Del	AG	-	p.V148fs
STAD	TCGA-HU-A4H3-01	TMC5	ENST00000561503.1,ENST00000567478.1,ENST00000564959.1,ENST00000219821.5,ENST00000542583.2,ENST00000396229.2,ENST00000541464.1	chr16	19498266:19498342:19498514:19498648:19501716:19501890,	19498515	19498648	19498596	19498596	Frame_Shift_Del	T	-	p.F841fs
STAD	TCGA-HU-A4H3-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590298	5590298	Frame_Shift_Del	G	-	p.P839fs
STAD	TCGA-HU-A4H3-01	HNRNPUL1	ENST00000595196.1,ENST00000392006.3,ENST00000378215.4,ENST00000602130.1,ENST00000352456.3,ENST00000595018.1,ENST00000599614.1,ENST00000263367.3,ENST00000593587.1	chr19	41807440:41807609:41808569:41808854:41809876:41809961,	41808570	41808854	41808818	41808818	Frame_Shift_Del	G	-	p.G646fs
STAD	TCGA-HU-A4H3-01	SCN9A	ENST00000375387.4,ENST00000409435.1,ENST00000452182.1,ENST00000303354.6	chr2	167138269:167138318:167140962:167141334:167142845:167143133,	167140963	167141334	167141203	167141203	Frame_Shift_Del	A	-	p.F578fs
STAD	TCGA-HU-A4H3-01	SCN9A	ENST00000454569.1,ENST00000409672.1	chr2	167138269:167138318:167140995:167141334:167142845:167143133,	167140996	167141334	167141203	167141203	Frame_Shift_Del	A	-	p.F578fs
STAD	TCGA-HU-A4H3-01	CBS	ENST00000398158.1,ENST00000398168.1,ENST00000488526.1,ENST00000441030.1,ENST00000465732.1,ENST00000352178.5,ENST00000470912.1,ENST00000398165.3,ENST00000359624.3	chr21	44488618:44488725:44492094:44492311:44493375:44493413,	44492095	44492311	44492285	44492285	Frame_Shift_Del	G	-	p.Q7fs
STAD	TCGA-HU-A4H3-01	CACNA2D3	ENST00000474759.1,ENST00000415676.2,ENST00000288197.5,ENST00000477024.1,ENST00000471363.1,ENST00000490478.1	chr3	54537518:54537681:54596826:54596958:54603821:54603882,	54596827	54596958	54596940	54596940	Frame_Shift_Del	T	-	p.F220fs
STAD	TCGA-HU-A4H3-01	CFI	ENST00000510800.1,ENST00000394634.2,ENST00000394635.3,ENST00000512148.1	chr4	110685692:110685846:110687709:110687980:110723070:110723134,	110687710	110687980	110687927	110687927	Frame_Shift_Del	T	-	p.K37fs
STAD	TCGA-HU-A4H3-01	PRDM5	ENST00000264808.3,ENST00000502409.1	chr4	121737607:121737729:121737986:121738079:121739507:121739682,	121737987	121738079	121738028	121738028	Frame_Shift_Del	A	-	p.F234fs
STAD	TCGA-HU-A4H3-01	NPC1L1	ENST00000289547.4,ENST00000381160.3,ENST00000423141.1,ENST00000546276.1	chr7	44575854:44576027:44576440:44576541:44578415:44579941,	44576441	44576541	44576448	44576448	Frame_Shift_Del	C	-	p.G558fs
STAD	TCGA-HU-A4H3-01	CCDC120	ENST00000603986.1,ENST00000603906.1,ENST00000422185.2	chrX	48923277:48923376:48924711:48925626:48926079:48926305,	48924712	48925626	48925140	48925140	Frame_Shift_Del	G	-	p.W462fs
STAD	TCGA-HU-A4H3-01	NLGN3	ENST00000374051.3,ENST00000358741.3,ENST00000476589.1,ENST00000536169.1	chrX	70383992:70384178:70386860:70387650:70389103:70390143,	70386861	70387650	70387541	70387541	Frame_Shift_Del	G	-	p.G532fs
STAD	TCGA-HU-A4H5-01	ALDH16A1	ENST00000433981.2,ENST00000540132.1,ENST00000593417.1,ENST00000293350.4	chr19	49964875:49965057:49965140:49965293:49965826:49966012,	49965141	49965293	49965150	49965150	Frame_Shift_Del	G	-	p.A257fs
STAD	TCGA-HU-A4H8-01	FBXO3	ENST00000534136.1,ENST00000532927.1,ENST00000265651.3,ENST00000530013.1,ENST00000529137.1,ENST00000448981.2	chr11	33790396:33790560:33792286:33792376:33795939:33796050,	33792287	33792376	33792304	33792304	Frame_Shift_Del	T	-	p.K59fs
STAD	TCGA-HU-A4H8-01	FBXO3	ENST00000530401.1	chr11	33790396:33790560:33792286:33792361:33795939:33796064,	33792287	33792361	33792304	33792304	Frame_Shift_Del	T	-	p.K59fs
STAD	TCGA-HU-A4H8-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000404621.1	chr12	124848224:124848345:124856567:124857156:124862782:124862930,	124856568	124857156	124856837	124856837	Frame_Shift_Del	G	-	p.P846fs
STAD	TCGA-HU-A4H8-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R36fs
STAD	TCGA-HU-A4H8-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R36fs
STAD	TCGA-HU-A4H8-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675067	102675067	Frame_Shift_Del	C	-	p.A187fs
STAD	TCGA-HU-A4H8-01	DNAJA2	ENST00000563158.1	chr16	47001995:47002076:47005260:47005571:47005807:47005867,	47005261	47005571	47005467	47005468	Frame_Shift_Del	AA	-	p.F52fs
STAD	TCGA-HU-A4H8-01	DNAJA2	ENST00000317089.5	chr16	47001995:47002076:47005260:47005484:47005807:47005867,	47005261	47005484	47005467	47005468	Frame_Shift_Del	AA	-	p.F52fs
STAD	TCGA-HU-A4H8-01	LAMA3	ENST00000399516.3,ENST00000313654.9	chr18	21447797:21447881:21451394:21451625:21456257:21456371,	21451395	21451625	21451595	21451595	Frame_Shift_Del	C	-	p.C1656fs
STAD	TCGA-HU-A4H8-01	CIRBP	ENST00000588230.1,ENST00000589235.1,ENST00000587323.1,ENST00000586472.1,ENST00000585913.1,ENST00000589710.1,ENST00000588090.1,ENST00000586773.1,ENST00000591935.1,ENST00000590171.1,ENST00000585630.1,ENST00000588030.1,ENST00000591097.1,ENST00000589660.1,ENST00000586548.1,ENST00000589686.1,ENST00000320936.5,ENST00000586636.1,ENST00000585914.1,ENST00000587896.1	chr19	1271138:1271245:1271327:1271466:1271549:1271631,	1271328	1271466	1271433	1271433	Frame_Shift_Del	G	-	p.G106fs
STAD	TCGA-HU-A4H8-01	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000478733.1,ENST00000431670.2,ENST00000412622.1	chr3	111659381:111659492:111664114:111664204:111672776:111672876,111659381:111659492:111664114:111664204:111667778:111667922,	111664115	111664204	111664163	111664163	Frame_Shift_Del	G	-	p.G816fs
STAD	TCGA-HU-A4H8-01	PIGG	ENST00000506898.1,ENST00000383028.4,ENST00000453061.2,ENST00000504346.1,ENST00000509768.1	chr4	509761:509974:514844:515062:515448:515730,	514845	515062	515054	515055	Frame_Shift_Ins	-	T	p.V442fs
STAD	TCGA-HU-A4H8-01	PCGF3	ENST00000470161.2,ENST00000440452.1,ENST00000521023.2,ENST00000505655.2,ENST00000362003.5,ENST00000430644.1	chr4	738387:738476:755066:755204:758771:758852,	755067	755204	755175	755175	Frame_Shift_Del	A	-	p.K191fs
STAD	TCGA-HU-A4H8-01	BST1	ENST00000265016.4,ENST00000514989.1,ENST00000505785.1,ENST00000514445.1,ENST00000382346.3	chr4	15716950:15716984:15717329:15717422:15720529:15720616,	15717330	15717422	15717330	15717330	Frame_Shift_Del	T	-	p.G204fs
STAD	TCGA-HU-A4H8-01	DHX15	ENST00000336812.4	chr4	24544562:24544649:24550477:24550645:24556347:24556566,	24550478	24550645	24550501	24550502	Frame_Shift_Ins	-	T	p.K408fs
STAD	TCGA-HU-A4H8-01	ZDHHC14	ENST00000341375.8,ENST00000359775.5,ENST00000414563.2	chr6	158014040:158014178:158049380:158049518:158053865:158053914,	158049381	158049518	158049476	158049477	Frame_Shift_Del	AC	-	p.T221fs
STAD	TCGA-HU-A4H8-01	GPC2	ENST00000490629.1	chr7	99769273:99769301:99769401:99769582:99769709:99769840,	99769402	99769582	99769525	99769525	Frame_Shift_Del	G	-	p.P349fs
STAD	TCGA-HU-A4H8-01	GPC2	ENST00000486702.1,ENST00000471050.1,ENST00000292377.2	chr7	99769273:99769301:99769401:99769548:99769709:99769840,	99769402	99769548	99769525	99769525	Frame_Shift_Del	G	-	p.P349fs
STAD	TCGA-HU-A4H8-01	TJP2	ENST00000348208.4,ENST00000265384.7,ENST00000539225.1,ENST00000535702.1,ENST00000453658.2,ENST00000377245.4	chr9	71833172:71833275:71835802:71836412:71840219:71840323,	71835803	71836412	71835953	71835953	Frame_Shift_Del	G	-	p.G165fs
STAD	TCGA-HU-A4HD-01	MINK1	ENST00000571207.1,ENST00000355280.6,ENST00000574453.1,ENST00000347992.7	chr17	4793811:4794030:4794245:4794419:4794750:4795011,	4794246	4794419	4794324	4794324	Frame_Shift_Del	C	-	p.P549fs
STAD	TCGA-HU-A4HD-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579470	7579471	Frame_Shift_Ins	-	G	p.P72fs
STAD	TCGA-B7-5816-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33235814	33235814	Frame_Shift_Del	C	-	p.S345fs
STAD	TCGA-B7-5816-01	ELF3	ENST00000367283.3,ENST00000367284.5	chr1	201980256:201980427:201981084:201981306:201981471:201981564,	201981085	201981306	201981268	201981269	Frame_Shift_Ins	-	CT	p.P116fs
STAD	TCGA-B7-5816-01	ASXL2	ENST00000272341.4,ENST00000404843.1,ENST00000435504.4,ENST00000336112.4	chr2	25972564:25973282:25976402:25976508:25978886:25978983,	25976403	25976508	25976450	25976450	Frame_Shift_Del	T	-	p.V366fs
STAD	TCGA-B7-5816-01	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185234854:185234950:185236929:185237097:185241858:185241948,	185236930	185237097	185237031	185237032	Frame_Shift_Del	CT	-	p.S262fs
STAD	TCGA-B7-5816-01	SLC30A5	ENST00000396591.3,ENST00000507354.1	chr5	68413169:68413223:68414325:68414455:68417573:68417722,68413169:68413223:68414325:68414455:68417520:68417722,	68414326	68414455	68414387	68414387	Frame_Shift_Del	T	-	p.A500fs
STAD	TCGA-B7-5816-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784284	135784285	Frame_Shift_Ins	-	T	p.T304fs
STAD	TCGA-B7-5816-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547974	35547974	Frame_Shift_Del	C	-	p.S485fs
STAD	TCGA-B7-5816-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717771	Frame_Shift_Ins	-	A	p.L265fs
STAD	TCGA-B7-5816-01	ATF7IP	ENST00000544627.1,ENST00000540793.1,ENST00000543189.1,ENST00000536444.1,ENST00000261168.4	chr12	14628823:14628902:14631250:14631406:14633936:14634119,	14631251	14631406	14631256	14631257	Frame_Shift_Ins	-	A	p.P982fs
STAD	TCGA-B7-5816-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514620	75514623	Frame_Shift_Del	TCTG	-	p.T579fs
STAD	TCGA-B7-5816-01	PSMC1	ENST00000555679.1,ENST00000557357.1,ENST00000261303.8,ENST00000554624.1	chr14	90725503:90725557:90726458:90726555:90729661:90729786,	90726459	90726555	90726465	90726465	Frame_Shift_Del	A	-	p.K21fs
STAD	TCGA-B7-5816-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749493	33749494	Frame_Shift_Ins	-	A	p.F185fs
STAD	TCGA-B7-5816-01	BSG	ENST00000353555.4,ENST00000572899.1	chr19	571304:571579:579499:579656:580378:580461,572595:572701:579499:579656:580378:580461,	579500	579656	579603	579603	Frame_Shift_Del	G	-	p.K173fs
STAD	TCGA-B7-5816-01	BSG	ENST00000573216.1	chr19	572595:572701:579523:579656:580378:580461,	579524	579656	579603	579603	Frame_Shift_Del	G	-	p.K173fs
STAD	TCGA-B7-5816-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45874790	45874790	Frame_Shift_Del	T	-	p.N756fs
STAD	TCGA-B7-5816-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939823	137939824	Frame_Shift_Ins	-	G	p.P23fs
STAD	TCGA-B7-5818-01	RBM47	ENST00000319592.4,ENST00000381795.6	chr4	40434719:40434879:40439787:40440941:40468593:40468662,	40439788	40440941	40440537	40440538	Frame_Shift_Ins	-	T	p.K125fs
STAD	TCGA-BR-4184-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331764	85331765	Frame_Shift_Ins	-	A	p.Y14fs
STAD	TCGA-BR-4184-01	KCNH1	ENST00000271751.4	chr1	211092981:211093411:211192124:211192598:211256121:211256240,	211192125	211192598	211192537	211192538	Frame_Shift_Ins	-	G	p.P207fs
STAD	TCGA-BR-4184-01	KCNH1	ENST00000367007.4	chr1	211092981:211093411:211192205:211192598:211256121:211256240,	211192206	211192598	211192537	211192538	Frame_Shift_Ins	-	G	p.P207fs
STAD	TCGA-BR-4184-01	BIRC6	ENST00000471232.1,ENST00000421745.2	chr2	32832521:32832710:32836514:32836649:32842791:32843943,	32836515	32836649	32836529	32836530	Frame_Shift_Ins	-	T	p.H4758fs
STAD	TCGA-BR-4184-01	DUSP11	ENST00000272444.3	chr2	73989720:73989986:73993544:73993721:73993954:73994020,	73993545	73993721	73993685	73993686	Frame_Shift_Ins	-	A	p.F265fs
STAD	TCGA-BR-4184-01	WDR54	ENST00000469321.1,ENST00000480089.1,ENST00000465134.1,ENST00000348227.4,ENST00000409791.1,ENST00000461531.1,ENST00000482880.1	chr2	74650445:74650512:74650604:74650658:74650981:74651109,	74650605	74650658	74650623	74650624	Frame_Shift_Ins	-	G	p.R124fs
STAD	TCGA-BR-4184-01	NDUFA10	ENST00000443626.1	chr2	240929490:240929599:240946732:240946787:240957969:240958056,	240946733	240946787	240946781	240946781	Frame_Shift_Del	T	-	p.C283fs
STAD	TCGA-BR-4184-01	PDCD6IP	ENST00000457054.2	chr3	33867971:33868072:33870329:33870461:33877535:33877664,	33870330	33870461	33870419	33870419	Frame_Shift_Del	A	-	p.A264fs
STAD	TCGA-BR-4184-01	PDCD6IP	ENST00000307296.3	chr3	33867971:33868072:33870344:33870461:33877535:33877664,	33870345	33870461	33870419	33870419	Frame_Shift_Del	A	-	p.A264fs
STAD	TCGA-BR-4184-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.T1292fs
STAD	TCGA-BR-4184-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418640	122418640	Frame_Shift_Del	A	-	p.I413fs
STAD	TCGA-BR-4184-01	SLC33A1	ENST00000359479.3	chr3	155551645:155551830:155560220:155560408:155571011:155571106,	155560221	155560408	155560396	155560396	Frame_Shift_Del	A	-	p.F263fs
STAD	TCGA-BR-4184-01	CCDC50	ENST00000392456.3	chr3	191087707:191087825:191092850:191093378:191097947:191098063,	191092851	191093378	191093199	191093199	Frame_Shift_Del	A	-	p.E266fs
STAD	TCGA-BR-4184-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589576	67589576	Frame_Shift_Del	A	-	p.G446fs
STAD	TCGA-BR-4184-01	RNF144B	ENST00000259939.3	chr6	18387744:18387861:18399729:18399930:18427811:18427916,	18399730	18399930	18399839	18399840	Frame_Shift_Ins	-	C	p.A25fs
STAD	TCGA-BR-4184-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394428	64394429	Frame_Shift_Ins	-	A	p.K268fs
STAD	TCGA-BR-4184-01	FILIP1	ENST00000237172.7	chr6	76072459:76072633:76124412:76124694:76203129:76203345,	76124413	76124694	76124508	76124508	Frame_Shift_Del	T	-	p.T64fs
STAD	TCGA-BR-4184-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634231	84634232	Frame_Shift_Ins	-	A	p.Q245fs
STAD	TCGA-BR-4184-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
STAD	TCGA-BR-4184-01	EIF3H	ENST00000276682.4,ENST00000521861.1,ENST00000518995.1,ENST00000518949.1	chr8	117668143:117668244:117669453:117669553:117671051:117671219,	117669454	117669553	117669464	117669464	Frame_Shift_Del	A	-	p.S197fs
STAD	TCGA-BR-4184-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890940	Frame_Shift_Del	TT	-	p.T163fs
STAD	TCGA-BR-4184-01	RAB1B	ENST00000311481.6	chr11	66039627:66039723:66039835:66039931:66043274:66043382,	66039836	66039931	66039888	66039888	Frame_Shift_Del	G	-	p.R79fs
STAD	TCGA-BR-4184-01	CEP57	ENST00000325486.5,ENST00000535224.1	chr11	95551990:95552068:95555034:95555142:95555662:95555740,95551990:95552068:95555034:95555142:95560949:95561065,	95555035	95555142	95555113	95555113	Frame_Shift_Del	A	-	p.I259fs
STAD	TCGA-BR-4184-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018468	134018469	Frame_Shift_Ins	-	G	p.I291fs
STAD	TCGA-BR-4184-01	COPS7A	ENST00000538375.1,ENST00000534947.1,ENST00000229251.3,ENST00000455113.2,ENST00000543155.1,ENST00000534877.1,ENST00000543939.1,ENST00000539735.1	chr12	6839567:6839673:6839834:6839986:6840165:6840263,	6839835	6839986	6839847	6839847	Frame_Shift_Del	A	-	p.L216fs
STAD	TCGA-BR-4184-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14576874	14576875	Frame_Shift_Ins	-	A	p.Q8fs
STAD	TCGA-BR-4184-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542718	114542718	Frame_Shift_Del	C	-	p.G150fs
STAD	TCGA-BR-4184-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331226	69331226	Frame_Shift_Del	T	-	p.P467fs
STAD	TCGA-BR-4184-01	TTC3	ENST00000479930.1,ENST00000354749.2,ENST00000428693.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38570182:38570326:38572532:38572625:38573740:38573871,	38572533	38572625	38572580	38572580	Frame_Shift_Del	A	-	p.S1966fs
STAD	TCGA-BR-4191-01	SLC2A2	ENST00000314251.3	chr3	170724936:170725052:170732257:170732520:170736319:170736412,170727746:170727871:170732257:170732520:170736319:170736412,	170732258	170732520	170732334	170732346	Frame_Shift_Del	GGGACCAGAGCAT	-	p.M95fs
STAD	TCGA-BR-4191-01	JAK2	ENST00000539801.1,ENST00000381652.3,ENST00000544510.1	chr9	5090445:5090570:5090738:5090911:5123003:5123121,	5090739	5090911	5090820	5090839	Frame_Shift_Del	GTTAAAATTGGAGATTTTGG	-	p.R989fs
STAD	TCGA-BR-4201-01	SARS	ENST00000369923.4,ENST00000477544.1	chr1	109756603:109756750:109766599:109766670:109770973:109771054,	109766600	109766670	109766656	109766657	Frame_Shift_Del	GG	-	p.I64fs
STAD	TCGA-BR-4201-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816504	203816505	Frame_Shift_Ins	-	A	p.E412fs
STAD	TCGA-BR-4201-01	CNST	ENST00000366513.4	chr1	246729815:246729965:246754813:246755243:246784730:246784886,	246754814	246755243	246755180	246755180	Frame_Shift_Del	A	-	p.D105fs
STAD	TCGA-BR-4201-01	GTF3C2	ENST00000264720.3,ENST00000359541.2	chr2	27558802:27558895:27559064:27559292:27560110:27560175,	27559065	27559292	27559092	27559093	Frame_Shift_Ins	-	C	p.G454fs
STAD	TCGA-BR-4201-01	GTF3C2	ENST00000470115.1	chr2	27558494:27558573:27558783:27559292:27560110:27560175,	27558784	27559292	27559092	27559093	Frame_Shift_Ins	-	C	p.G454fs
STAD	TCGA-BR-4201-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544436	55544436	Frame_Shift_Del	T	-	p.M1217fs
STAD	TCGA-BR-4201-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71649954	71649954	Frame_Shift_Del	A	-	p.L1103fs
STAD	TCGA-BR-4201-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087884	109087884	Frame_Shift_Del	A	-	p.E700fs
STAD	TCGA-BR-4201-01	CLK1	ENST00000434813.2,ENST00000432425.1,ENST00000321356.4,ENST00000409769.2,ENST00000473565.1,ENST00000409403.2	chr2	201721613:201721708:201722440:201722607:201722695:201722812,	201722441	201722607	201722550	201722550	Frame_Shift_Del	A	-	p.E242fs
STAD	TCGA-BR-4201-01	CLK1	ENST00000461981.1	chr2	201721404:201721534:201721613:201722607:201722695:201722812,	201721614	201722607	201722550	201722550	Frame_Shift_Del	A	-	p.E242fs
STAD	TCGA-BR-4201-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561667	210561668	Frame_Shift_Ins	-	A	p.A1471fs
STAD	TCGA-BR-4201-01	ZFAND2B	ENST00000448496.1,ENST00000289528.5,ENST00000464902.1,ENST00000422255.1,ENST00000475533.1,ENST00000409336.1,ENST00000409097.1,ENST00000444522.2,ENST00000409217.1	chr2	220072608:220072760:220072977:220073070:220073147:220073208,	220072978	220073070	220073005	220073006	Frame_Shift_Del	TG	-	p.A154fs
STAD	TCGA-BR-4201-01	GIGYF2	ENST00000440945.1,ENST00000452341.2,ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000423659.1,ENST00000409196.3,ENST00000482952.1	chr2	233675953:233676061:233677100:233677201:233680346:233680447,	233677101	233677201	233677140	233677141	Frame_Shift_Del	TG	-	p.S703fs
STAD	TCGA-BR-4201-01	MAPKAPK3	ENST00000357955.2,ENST00000446044.1,ENST00000430409.1	chr3	50683642:50683695:50684170:50684256:50684553:50684634,	50684171	50684256	50684208	50684209	Frame_Shift_Del	CA	-	p.P289fs
STAD	TCGA-BR-4201-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766932	53766932	Frame_Shift_Del	A	-	p.E855fs
STAD	TCGA-BR-4201-01	IL20RB	ENST00000329582.4,ENST00000475972.1,ENST00000491483.1	chr3	136708282:136708407:136710779:136710930:136714255:136714348,	136710780	136710930	136710804	136710805	Frame_Shift_Ins	-	G	p.S185fs
STAD	TCGA-BR-4201-01	ABCC5	ENST00000437205.1,ENST00000334444.6,ENST00000265586.6	chr3	183670873:183671058:183677520:183677623:183679298:183679442,	183677521	183677623	183677573	183677577	Frame_Shift_Del	CTTGT	-	p.D809fs
STAD	TCGA-BR-4201-01	ITGA2	ENST00000510722.1,ENST00000503810.2,ENST00000509960.1,ENST00000513685.1,ENST00000296585.5	chr5	52368442:52368525:52368947:52369089:52370214:52370307,	52368948	52369089	52369066	52369067	Frame_Shift_Ins	-	T	p.L849fs
STAD	TCGA-BR-4201-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402940	52402940	Frame_Shift_Del	G	-	p.P22fs
STAD	TCGA-BR-4201-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Ins	-	GA	p.R889fs
STAD	TCGA-BR-4201-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33589160:33589468:33608260:33608331:33623542:33623664,	33608261	33608331	33608312	33608313	Frame_Shift_Ins	-	C	p.N47fs
STAD	TCGA-BR-4201-01	CUL9	ENST00000354495.3,ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43171591:43171725:43172097:43172277:43172485:43172595,	43172098	43172277	43172149	43172150	Frame_Shift_Ins	-	AG	p.Q1404fs
STAD	TCGA-BR-4201-01	MYB	ENST00000526565.1,ENST00000528774.1,ENST00000341911.5	chr6	135516885:135517055:135518098:135518461:135520045:135520188,135516885:135517140:135518098:135518461:135520045:135520188,	135518099	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
STAD	TCGA-BR-4201-01	MYB	ENST00000533384.1	chr6	135516885:135517140:135517863:135518461:135520045:135520188,	135517864	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
STAD	TCGA-BR-4201-01	IGFBP3	ENST00000428530.1,ENST00000417621.1,ENST00000381086.5,ENST00000275521.6,ENST00000381083.4	chr7	45954403:45954544:45956146:45956266:45956811:45956996,	45956147	45956266	45956203	45956215	Frame_Shift_Del	GACTCAGCACATT	-	p.N234fs
STAD	TCGA-BR-4201-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	711075	711076	Frame_Shift_Ins	-	C	p.C103fs
STAD	TCGA-BR-4201-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890940	Frame_Shift_Ins	-	T	p.T163fs
STAD	TCGA-BR-4201-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.G23fs
STAD	TCGA-BR-4201-01	HIPK3	ENST00000525975.1,ENST00000303296.4,ENST00000456517.1,ENST00000379016.3	chr11	33350145:33350179:33358620:33358740:33360302:33360388,	33358621	33358740	33358693	33358694	Frame_Shift_Ins	-	T	p.R431fs
STAD	TCGA-BR-4201-01	RTN3	ENST00000540798.1	chr11	63449044:63449250:63486452:63488504:63517462:63517669,	63486453	63488504	63488464	63488465	Frame_Shift_Ins	-	A	p.V830fs
STAD	TCGA-BR-4201-01	RTN3	ENST00000377819.5	chr11	63449044:63449250:63486173:63488504:63517462:63517669,63472322:63472379:63486173:63488504:63517462:63517669,	63486174	63488504	63488464	63488465	Frame_Shift_Ins	-	A	p.V830fs
STAD	TCGA-BR-4201-01	ALG8	ENST00000299626.5,ENST00000530454.1,ENST00000530910.1,ENST00000525870.1,ENST00000532050.1,ENST00000376156.3,ENST00000527099.1	chr11	77832182:77832220:77835066:77835260:77850539:77850638,77832182:77832220:77835066:77835260:77838403:77838482,	77835067	77835260	77835229	77835230	Frame_Shift_Ins	-	G	p.P69fs
STAD	TCGA-BR-4201-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
STAD	TCGA-BR-4201-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
STAD	TCGA-BR-4201-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42002888:42003547:42005348:42005694:42019377:42019604,	42005349	42005694	42005395	42005396	Frame_Shift_Ins	-	C	p.A1044fs
STAD	TCGA-BR-4201-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748429	43748448	Frame_Shift_Del	CCCATGACTGGGAATCTGAG	-	p.S782fs
STAD	TCGA-BR-4201-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76696864:76697020:76726418:76726651:76763552:76763676,	76726419	76726651	76726492	76726493	Frame_Shift_Ins	-	T	p.I1080fs
STAD	TCGA-BR-4201-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-BR-4201-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-BR-4201-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-BR-4201-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-BR-4201-01	PHF12	ENST00000332830.4,ENST00000589176.1	chr17	27233122:27233535:27233873:27234012:27234607:27234690,	27233874	27234012	27233909	27233910	Frame_Shift_Ins	-	G	p.P882fs
STAD	TCGA-BR-4201-01	MSL1	ENST00000579565.1,ENST00000577454.1,ENST00000578648.1	chr17	38279537:38279633:38282435:38282659:38285497:38285513,	38282436	38282659	38282534	38282535	Frame_Shift_Del	AG	-	p.E88fs
STAD	TCGA-BR-4201-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61744345:61744420:61759125:61759259:61762876:61762938,	61759126	61759259	61759155	61759155	Frame_Shift_Del	C	-	p.P177fs
STAD	TCGA-BR-4201-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939823	137939823	Frame_Shift_Del	G	-	p.P23fs
STAD	TCGA-BR-4256-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521525	46521525	Frame_Shift_Del	T	-	p.M341fs
STAD	TCGA-BR-4256-01	WLS	ENST00000370976.3,ENST00000262348.4	chr1	68564155:68564436:68603462:68603616:68610251:68610335,68591656:68592018:68603462:68603616:68610251:68610335,	68603463	68603616	68603558	68603558	Frame_Shift_Del	A	-	p.F472fs
STAD	TCGA-BR-4256-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127462	170127462	Frame_Shift_Del	A	-	p.S758fs
STAD	TCGA-BR-4256-01	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204144781:204144836:204150334:204150455:204154487:204154599,	204150335	204150455	204150380	204150380	Frame_Shift_Del	A	-	p.Q307fs
STAD	TCGA-BR-4256-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724116	230724117	Frame_Shift_Ins	-	T	p.K133fs
STAD	TCGA-BR-4256-01	HDLBP	ENST00000427487.1	chr2	242179225:242179235:242179315:242179579:242181874:242181955,	242179316	242179579	242179467	242179467	Frame_Shift_Del	C	-	p.G747fs
STAD	TCGA-BR-4256-01	HDLBP	ENST00000373292.4,ENST00000479169.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000459788.1,ENST00000310931.4	chr2	242179225:242179235:242179315:242179537:242181874:242181955,	242179316	242179537	242179467	242179467	Frame_Shift_Del	C	-	p.G747fs
STAD	TCGA-BR-4256-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.T1292fs
STAD	TCGA-BR-4256-01	PCLO	ENST00000423517.2,ENST00000333891.9	chr7	82544001:82546189:82578791:82580806:82581171:82586251,	82578792	82580806	82578856	82578857	Frame_Shift_Ins	-	T	p.K3683fs
STAD	TCGA-BR-4256-01	CMAS	ENST00000229329.2,ENST00000535610.1,ENST00000537658.1	chr12	22213765:22213860:22214214:22214386:22215214:22215347,	22214215	22214386	22214223	22214224	Frame_Shift_Ins	-	A	p.Y266fs
STAD	TCGA-BR-4256-01	ENTPD5	ENST00000557325.1,ENST00000553284.1,ENST00000334696.6	chr14	74444001:74444077:74449720:74449864:74453516:74453596,	74449721	74449864	74449797	74449797	Frame_Shift_Del	T	-	p.K122fs
STAD	TCGA-BR-4257-01	GRIK3	ENST00000373091.3,ENST00000373093.4	chr1	37337788:37337970:37346234:37346492:37356520:37356697,	37346235	37346492	37346391	37346392	Frame_Shift_Ins	-	G	p.H132fs
STAD	TCGA-BR-4257-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073055	46073055	Frame_Shift_Del	A	-	p.A157fs
STAD	TCGA-BR-4257-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948389	169948390	Frame_Shift_Ins	-	A	p.E281fs
STAD	TCGA-BR-4257-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.T1292fs
STAD	TCGA-BR-4257-01	NPHP3	ENST00000326682.8,ENST00000337331.5,ENST00000469232.1,ENST00000343113.4	chr3	132437837:132437988:132438548:132438674:132440806:132440851,	132438549	132438674	132438596	132438597	Frame_Shift_Del	CT	-	p.A158fs
STAD	TCGA-BR-4257-01	MBOAT1	ENST00000536798.1,ENST00000324607.7	chr6	20131374:20131430:20144450:20144546:20151415:20151493,	20144451	20144546	20144534	20144535	Frame_Shift_Ins	-	A	p.F112fs
STAD	TCGA-BR-4257-01	TTC16	ENST00000373289.3,ENST00000488285.1	chr9	130489548:130489744:130491859:130491947:130492914:130493868,	130491860	130491947	130491863	130491864	Frame_Shift_Ins	-	A	p.E589fs
STAD	TCGA-BR-4257-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-4257-01	DOCK1	ENST00000280333.6	chr10	128797617:128797699:128798435:128798571:128806995:128807068,	128798436	128798571	128798457	128798458	Frame_Shift_Ins	-	A	p.L290fs
STAD	TCGA-BR-4257-01	RAB1B	ENST00000311481.6	chr11	66039627:66039723:66039835:66039931:66043274:66043382,	66039836	66039931	66039888	66039889	Frame_Shift_Ins	-	G	p.R79fs
STAD	TCGA-BR-4257-01	NEK3	ENST00000452082.2,ENST00000548127.1,ENST00000258597.5,ENST00000400357.2,ENST00000378101.2,ENST00000339406.3	chr13	52718050:52718122:52718825:52719026:52722549:52722604,	52718826	52719026	52718829	52718829	Frame_Shift_Del	G	-	p.E289fs
STAD	TCGA-BR-4257-01	TTC23	ENST00000394130.1,ENST00000394135.3,ENST00000394132.2,ENST00000558663.1,ENST00000558613.1,ENST00000394129.2,ENST00000434594.1,ENST00000494567.1,ENST00000262074.4,ENST00000459771.1,ENST00000394136.1	chr15	99696352:99696502:99701944:99702072:99715254:99715325,	99701945	99702072	99701948	99701948	Frame_Shift_Del	T	-	p.E331fs
STAD	TCGA-BR-4267-01	PRUNE2	ENST00000376713.3,ENST00000492157.1,ENST00000428286.1,ENST00000376718.3	chr9	79441495:79441648:79461430:79461594:79465378:79465581,	79461431	79461594	79461440	79461458	Frame_Shift_Del	GATGAGCCAGTTGCTCGGT	-	p.T161fs
STAD	TCGA-BR-4279-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155451843	155451844	Frame_Shift_Ins	-	T	p.K273fs
STAD	TCGA-BR-4279-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954432	62954433	Frame_Shift_Del	GT	-	p.V1190fs
STAD	TCGA-BR-4280-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812017	59812018	Frame_Shift_Ins	-	G	p.V137fs
STAD	TCGA-BR-4280-01	SETD2	ENST00000445387.1,ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47139444:47139571:47142947:47143045:47144835:47144913,	47142948	47143045	47143010	47143011	Frame_Shift_Ins	-	A	p.F1718fs
STAD	TCGA-BR-4280-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194165453:194165515:194167655:194167844:194168580:194168738,	194167656	194167844	194167727	194167728	Frame_Shift_Ins	-	T	p.I476fs
STAD	TCGA-BR-4280-01	ADH1A	ENST00000209668.2	chr4	100205555:100205775:100205872:100205960:100208006:100208145,	100205873	100205960	100205903	100205904	Frame_Shift_Ins	-	T	p.N106fs
STAD	TCGA-BR-4280-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405954	157405955	Frame_Shift_Ins	-	G	p.P719fs
STAD	TCGA-BR-4280-01	VPS41	ENST00000395969.2,ENST00000310301.4	chr7	38807136:38807198:38810797:38810854:38812121:38812237,	38810798	38810854	38810820	38810820	Frame_Shift_Del	T	-	p.N388fs
STAD	TCGA-BR-4280-01	TEX10	ENST00000374902.4	chr9	103064367:103064586:103065913:103066124:103070781:103070963,	103065914	103066124	103066108	103066109	Frame_Shift_Ins	-	C	p.V828fs
STAD	TCGA-BR-4280-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
STAD	TCGA-BR-4280-01	TMCO3	ENST00000434316.2	chr13	114193671:114193822:114201614:114201694:114202617:114202704,	114201615	114201694	114201628	114201629	Frame_Shift_Ins	-	C	p.F568fs
STAD	TCGA-BR-4280-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748661	43748661	Frame_Shift_Del	T	-	p.E711fs
STAD	TCGA-BR-4280-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-BR-4280-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-BR-4280-01	MYO5B	ENST00000285039.7	chr18	47479629:47479713:47480682:47480805:47488635:47488776,	47480683	47480805	47480800	47480801	Frame_Shift_Ins	-	G	p.P517fs
STAD	TCGA-BR-4280-01	TMSB15B	ENST00000567181.1	chrX	103217247:103217296:103219078:103219195:103227463:103229570,	103219079	103219195	103219169	103219170	Frame_Shift_Ins	-	A	p.E25fs
STAD	TCGA-BR-4292-01	RERE	ENST00000480342.1,ENST00000337907.3,ENST00000400907.2,ENST00000400908.2	chr1	8617476:8617582:8674619:8674745:8684368:8684439,	8674620	8674745	8674690	8674691	Frame_Shift_Ins	-	G	p.P151fs
STAD	TCGA-BR-4292-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14107893	14107894	Frame_Shift_Ins	-	T	p.A1201fs
STAD	TCGA-BR-4292-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812017	59812017	Frame_Shift_Del	G	-	p.V137fs
STAD	TCGA-BR-4292-01	SLC39A1	ENST00000368623.3,ENST00000429040.1,ENST00000368621.1,ENST00000417348.1,ENST00000356205.4,ENST00000413622.1,ENST00000310483.6	chr1	153932929:153933230:153934695:153934826:153935004:153935223,	153934696	153934826	153934781	153934782	Frame_Shift_Ins	-	C	p.G78fs
STAD	TCGA-BR-4292-01	CREB3L4	ENST00000479010.1,ENST00000368603.1,ENST00000368601.1	chr1	153940739:153940786:153940997:153941175:153941405:153941444,	153940998	153941175	153941173	153941174	Frame_Shift_Del	TG	-	p.G57fs
STAD	TCGA-BR-4292-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134660	161134660	Frame_Shift_Del	A	-	p.I473fs
STAD	TCGA-BR-4292-01	EXO1	ENST00000366548.3,ENST00000518483.1,ENST00000348581.5	chr1	242042341:242042645:242045217:242045319:242048615:242048809,	242045218	242045319	242045292	242045292	Frame_Shift_Del	A	-	p.S728fs
STAD	TCGA-BR-4292-01	TNPO1	ENST00000505082.1	chr5	72168494:72168547:72173054:72173173:72178293:72178354,	72173055	72173173	72173171	72173174	Frame_Shift_Del	TAAG	-	p.P306fs
STAD	TCGA-BR-4292-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13620992	13620993	Frame_Shift_Ins	-	A	p.Q236fs
STAD	TCGA-BR-4292-01	MTUS1	ENST00000400046.1,ENST00000520196.1,ENST00000519263.1,ENST00000297488.6,ENST00000544260.1,ENST00000521772.1,ENST00000381869.3,ENST00000262102.6,ENST00000518713.1,ENST00000381861.3,ENST00000517413.1	chr8	17512072:17512175:17513371:17513574:17532694:17532761,	17513372	17513574	17513479	17513480	Frame_Shift_Ins	-	T	p.T1001fs
STAD	TCGA-BR-4292-01	FUT10	ENST00000327671.5,ENST00000524021.1,ENST00000518672.1	chr8	33230161:33230322:33246480:33247316:33310733:33311028,	33246481	33247316	33246853	33246853	Frame_Shift_Del	A	-	p.E331fs
STAD	TCGA-BR-4292-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000522181.1	chr8	92406024:92406079:92406163:92406267:92407289:92407877,	92406164	92406267	92406218	92406218	Frame_Shift_Del	T	-	p.I629fs
STAD	TCGA-BR-4292-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1,ENST00000358397.5,ENST00000423620.2	chr8	95680176:95680478:95683680:95683899:95686535:95686722,	95683681	95683899	95683842	95683843	Frame_Shift_Ins	-	G	p.L465fs
STAD	TCGA-BR-4292-01	RIMS2	ENST00000262231.10,ENST00000515551.1,ENST00000507677.1,ENST00000507740.1,ENST00000504942.2,ENST00000436393.2,ENST00000408894.2,ENST00000406091.3	chr8	104924359:104924400:104927722:104927822:104928641:104928765,	104927723	104927822	104927779	104927779	Frame_Shift_Del	A	-	p.V401fs
STAD	TCGA-BR-4292-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830828	22830828	Frame_Shift_Del	G	-	p.P314fs
STAD	TCGA-BR-4292-01	JMJD1C	ENST00000402544.1,ENST00000399262.2,ENST00000327520.7,ENST00000542921.1,ENST00000399251.1,ENST00000497922.1	chr10	64949046:64949206:64950653:64950868:64952697:64952851,	64950654	64950868	64950825	64950828	Frame_Shift_Del	TCTT	-	p.R2040fs
STAD	TCGA-BR-4292-01	PRDX3	ENST00000298510.2	chr10	120933962:120934104:120936532:120936665:120938266:120938345,	120936533	120936665	120936634	120936635	Frame_Shift_Ins	-	C	p.G23fs
STAD	TCGA-BR-4292-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500145	10500146	Frame_Shift_Ins	-	C	p.G107fs
STAD	TCGA-BR-4292-01	CELF1	ENST00000532048.1,ENST00000310513.5,ENST00000358597.3,ENST00000539455.1,ENST00000395292.2,ENST00000531165.1,ENST00000361904.3,ENST00000539254.1,ENST00000395290.2	chr11	47493882:47493909:47494639:47494783:47496887:47497009,	47494640	47494783	47494745	47494746	Frame_Shift_Ins	-	G	p.Q438fs
STAD	TCGA-BR-4292-01	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64111891	64111892	Frame_Shift_Ins	-	A	p.G626fs
STAD	TCGA-BR-4292-01	C2CD3	ENST00000313663.7,ENST00000415191.2,ENST00000334126.7	chr11	73825428:73825638:73829272:73829427:73834032:73834180,	73829273	73829427	73829364	73829364	Frame_Shift_Del	T	-	p.I477fs
STAD	TCGA-BR-4292-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577802	14577803	Frame_Shift_Ins	-	A	p.E318fs
STAD	TCGA-BR-4292-01	LARP4	ENST00000429001.3,ENST00000398473.2,ENST00000522085.1,ENST00000521120.1,ENST00000520064.2,ENST00000293618.8,ENST00000518561.1,ENST00000518444.1	chr12	50835372:50835426:50847242:50847455:50848096:50848200,	50847243	50847455	50847267	50847268	Frame_Shift_Ins	-	T	p.T276fs
STAD	TCGA-BR-4292-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
STAD	TCGA-BR-4292-01	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99065312:99065497:99071202:99071329:99074054:99074180,	99071203	99071329	99071207	99071208	Frame_Shift_Ins	-	A	p.N599fs
STAD	TCGA-BR-4292-01	CPNE6	ENST00000558859.1,ENST00000560092.1	chr14	24540789:24540850:24542707:24542887:24543259:24543334,	24542708	24542887	24542776	24542777	Frame_Shift_Ins	-	T	p.Y134fs
STAD	TCGA-BR-4292-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50600840:50600957:50605329:50605502:50606659:50606777,	50605330	50605502	50605445	50605446	Frame_Shift_Ins	-	T	p.K948fs
STAD	TCGA-BR-4292-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728644	100728645	Frame_Shift_Ins	-	A	p.E228fs
STAD	TCGA-BR-4292-01	ADSSL1	ENST00000555486.1,ENST00000557582.1,ENST00000332972.5,ENST00000553540.1,ENST00000330877.2	chr14	105207175:105207257:105207453:105207580:105208184:105208338,	105207454	105207580	105207522	105207523	Frame_Shift_Ins	-	C	p.G245fs
STAD	TCGA-BR-4292-01	NETO2	ENST00000303155.5,ENST00000562435.1	chr16	47117524:47117712:47120136:47120250:47143393:47143622,	47120137	47120250	47120148	47120149	Frame_Shift_Ins	-	T	p.N329fs
STAD	TCGA-BR-4292-01	CHST9	ENST00000581714.1,ENST00000284224.8	chr18	24495742:24497314:24524292:24524330:24604079:24604121,	24524293	24524330	24524316	24524317	Frame_Shift_Ins	-	T	p.I73fs
STAD	TCGA-BR-4292-01	NCAN	ENST00000538881.1,ENST00000252575.6,ENST00000590187.2	chr19	19337817:19337882:19338089:19339448:19344597:19344714,	19338090	19339448	19338309	19338310	Frame_Shift_Ins	-	C	p.S627fs
STAD	TCGA-BR-4292-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-BR-4292-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-BR-4292-01	TTC3	ENST00000479930.1,ENST00000472398.1,ENST00000354749.2,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38544896:38545046:38555075:38555215:38558006:38558075,	38555076	38555215	38555143	38555144	Frame_Shift_Del	AA	-	p.E1562fs
STAD	TCGA-BR-4361-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104629	26104630	Frame_Shift_Ins	-	G	p.P430fs
STAD	TCGA-BR-4361-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081758	Frame_Shift_Ins	-	G	p.P117fs
STAD	TCGA-BR-4361-01	SELENBP1	ENST00000470345.1,ENST00000474352.1	chr1	151340674:151340795:151341479:151342245:151345113:151345159,	151341480	151342245	151341565	151341568	Frame_Shift_Del	GTGC	-	p.R133fs
STAD	TCGA-BR-4361-01	SELENBP1	ENST00000423070.1,ENST00000427977.2,ENST00000455397.1,ENST00000443708.1	chr1	151340674:151340795:151341475:151341665:151341917:151341982,	151341476	151341665	151341565	151341568	Frame_Shift_Del	GTGC	-	p.R133fs
STAD	TCGA-BR-4361-01	SELENBP1	ENST00000455839.1	chr1	151340674:151340795:151341479:151341665:151341917:151341982,151340674:151340795:151341479:151341665:151342188:151342245,	151341480	151341665	151341565	151341568	Frame_Shift_Del	GTGC	-	p.R133fs
STAD	TCGA-BR-4361-01	SELENBP1	ENST00000492643.1,ENST00000493560.1,ENST00000463664.1	chr1	151340674:151340795:151341479:151342030:151342188:151342245,	151341480	151342030	151341565	151341568	Frame_Shift_Del	GTGC	-	p.R133fs
STAD	TCGA-BR-4361-01	KIAA1614	ENST00000367587.1,ENST00000367588.4	chr1	180897590:180897709:180904250:180905806:180907690:180907847,	180904251	180905806	180905051	180905051	Frame_Shift_Del	G	-	p.W669fs
STAD	TCGA-BR-4361-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087884	109087884	Frame_Shift_Del	A	-	p.E700fs
STAD	TCGA-BR-4361-01	TANC1	ENST00000263635.6,ENST00000454300.1	chr2	159922407:159922483:159954148:159954346:159992704:159992809,	159954149	159954346	159954334	159954335	Frame_Shift_Ins	-	A	p.N82fs
STAD	TCGA-BR-4361-01	DHRS9	ENST00000357546.2,ENST00000412271.1,ENST00000421653.1,ENST00000436483.2,ENST00000327239.4,ENST00000428522.1,ENST00000432060.2,ENST00000602501.1	chr2	169939838:169940097:169948299:169948463:169952053:169952277,	169948300	169948463	169948389	169948390	Frame_Shift_Ins	-	A	p.E281fs
STAD	TCGA-BR-4361-01	TADA3	ENST00000440161.1,ENST00000301964.2,ENST00000343450.2	chr3	9831192:9831298:9831396:9831647:9832943:9833065,	9831397	9831647	9831567	9831567	Frame_Shift_Del	G	-	p.K97fs
STAD	TCGA-BR-4361-01	VILL	ENST00000383759.2,ENST00000484717.1,ENST00000283713.6	chr3	38038973:38039176:38039580:38039659:38039756:38039855,	38039581	38039659	38039625	38039626	Frame_Shift_Ins	-	C	p.T270fs
STAD	TCGA-BR-4361-01	USP19	ENST00000398892.3,ENST00000398896.1,ENST00000398898.2,ENST00000417901.1,ENST00000306026.5	chr3	49153156:49153371:49153479:49153595:49153712:49153784,49153156:49153377:49153479:49153595:49153712:49153784,	49153480	49153595	49153503	49153504	Frame_Shift_Ins	-	C	p.G382fs
STAD	TCGA-BR-4361-01	STAG1	ENST00000536929.1,ENST00000383202.2,ENST00000236698.5,ENST00000434713.2,ENST00000483235.1	chr3	136085784:136085924:136087949:136088124:136096501:136096594,	136087950	136088124	136088059	136088060	Frame_Shift_Del	CT	-	p.E812fs
STAD	TCGA-BR-4361-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627690	137627690	Frame_Shift_Del	T	-	p.K322fs
STAD	TCGA-BR-4361-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580509	7580509	Frame_Shift_Del	A	-	p.L1362fs
STAD	TCGA-BR-4361-01	BCKDHB	ENST00000356489.5,ENST00000320393.6	chr6	80878591:80878747:80880998:80881107:80910650:80910748,	80880999	80881107	80881074	80881075	Frame_Shift_Ins	-	T	p.I236fs
STAD	TCGA-BR-4361-01	PUS7	ENST00000481939.1,ENST00000356362.2,ENST00000469408.1	chr7	105121498:105121624:105122758:105122887:105131986:105132064,	105122759	105122887	105122810	105122810	Frame_Shift_Del	T	-	p.N339fs
STAD	TCGA-BR-4361-01	RBPMS	ENST00000517860.1,ENST00000397323.4,ENST00000523115.1,ENST00000287771.5,ENST00000520191.1,ENST00000520161.1,ENST00000523717.1,ENST00000339877.4,ENST00000320203.4,ENST00000519647.1,ENST00000522694.1	chr8	30336845:30336893:30361802:30361953:30402010:30402073,	30361803	30361953	30361898	30361899	Frame_Shift_Ins	-	A	p.P114fs
STAD	TCGA-BR-4361-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37730181	37730182	Frame_Shift_Ins	-	T	p.K713fs
STAD	TCGA-BR-4361-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000522181.1	chr8	92406024:92406079:92406163:92406267:92407289:92407877,	92406164	92406267	92406218	92406218	Frame_Shift_Del	T	-	p.I629fs
STAD	TCGA-BR-4361-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	399145:399259:404917:405073:406929:407069,	404918	405073	405015	405016	Frame_Shift_Ins	-	T	p.L1111fs
STAD	TCGA-BR-4361-01	PSIP1	ENST00000380738.4,ENST00000380715.1,ENST00000380733.4,ENST00000380716.4,ENST00000487363.1,ENST00000397519.2	chr9	15486824:15486929:15489983:15490122:15506558:15506635,	15489984	15490122	15490046	15490050	Frame_Shift_Del	CTTTT	-	p.K75fs
STAD	TCGA-BR-4361-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114820707:114820966:114825216:114825313:114840817:114841004,	114825217	114825313	114825229	114825229	Frame_Shift_Del	T	-	p.N613fs
STAD	TCGA-BR-4361-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1863fs
STAD	TCGA-BR-4361-01	ENTPD7	ENST00000370489.4	chr10	101455712:101455879:101458290:101458615:101460729:101460815,	101458291	101458615	101458541	101458541	Frame_Shift_Del	T	-	p.E422fs
STAD	TCGA-BR-4361-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805647	125805647	Frame_Shift_Del	G	-	p.H28fs
STAD	TCGA-BR-4361-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
STAD	TCGA-BR-4361-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121040	95121041	Frame_Shift_Ins	-	A	p.F185fs
STAD	TCGA-BR-4361-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-BR-4361-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-BR-4361-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174185	105174185	Frame_Shift_Del	C	-	p.S527fs
STAD	TCGA-BR-4361-01	RPAP1	ENST00000562303.1,ENST00000304330.4,ENST00000561603.1	chr15	41814295:41814448:41814962:41815158:41815442:41815552,	41814963	41815158	41815101	41815102	Frame_Shift_Ins	-	G	p.P868fs
STAD	TCGA-BR-4361-01	NPRL3	ENST00000445810.1	chr16	162658:162774:167299:167374:169124:169254,162658:162774:167299:167374:180520:180590,	167300	167374	167321	167321	Frame_Shift_Del	A	-	p.N125fs
STAD	TCGA-BR-4361-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944501	Frame_Shift_Ins	-	G	p.P454fs
STAD	TCGA-BR-4361-01	ACSM3	ENST00000562251.1,ENST00000289416.5,ENST00000567387.1,ENST00000450120.2	chr16	20803557:20803657:20807691:20807811:20808207:20808251,	20807692	20807811	20807776	20807777	Frame_Shift_Ins	-	A	p.V575fs
STAD	TCGA-BR-4361-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736372	Frame_Shift_Ins	-	C	p.Q1875fs
STAD	TCGA-BR-4361-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645340	Frame_Shift_Ins	-	A	p.A201fs
STAD	TCGA-BR-4361-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449741	Frame_Shift_Ins	-	T	p.C190fs
STAD	TCGA-BR-4361-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610701	41610702	Frame_Shift_Ins	-	G	p.P133fs
STAD	TCGA-BR-4361-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
STAD	TCGA-BR-4361-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996513	45996513	Frame_Shift_Del	G	-	p.P313fs
STAD	TCGA-BR-4361-01	SMOX	ENST00000379460.2,ENST00000305958.4,ENST00000457205.1	chr20	4162540:4162623:4162735:4163495:4164140:4164301,	4162736	4163495	4163028	4163029	Frame_Shift_Ins	-	G	p.R301fs
STAD	TCGA-BR-4361-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581680	17581681	Frame_Shift_Ins	-	T	p.M100fs
STAD	TCGA-BR-4361-01	ATP11C	ENST00000460773.1,ENST00000370543.1,ENST00000361648.2,ENST00000370557.1,ENST00000327569.3,ENST00000359686.2	chrX	138856848:138857112:138864705:138864887:138865322:138865426,	138864706	138864887	138864773	138864774	Frame_Shift_Ins	-	T	p.M632fs
STAD	TCGA-BR-4362-01	RERE	ENST00000476556.1,ENST00000337907.3,ENST00000377464.1,ENST00000400908.2	chr1	8418255:8418976:8419823:8420046:8420171:8421550,	8419824	8420046	8420009	8420010	Frame_Shift_Del	CA	-	p.A1145fs
STAD	TCGA-BR-4362-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
STAD	TCGA-BR-4362-01	RAP1GAP	ENST00000290101.4,ENST00000471600.2,ENST00000374761.2,ENST00000374765.4,ENST00000374763.2,ENST00000495204.1,ENST00000542643.2	chr1	21935342:21935429:21936067:21936139:21936612:21936717,	21936068	21936139	21936094	21936094	Frame_Shift_Del	G	-	p.L349fs
STAD	TCGA-BR-4362-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.T118fs
STAD	TCGA-BR-4362-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147618	67147618	Frame_Shift_Del	T	-	p.I294fs
STAD	TCGA-BR-4362-01	HFM1	ENST00000430465.1	chr1	91781696:91781741:91781947:91782033:91784634:91784766,91781696:91781741:91781947:91782033:91784849:91784947,	91781948	91782033	91781980	91781981	Frame_Shift_Ins	-	T	p.I956fs
STAD	TCGA-BR-4362-01	MPZL1	ENST00000465787.1,ENST00000367853.3,ENST00000359523.2,ENST00000474859.1,ENST00000474729.1	chr1	167734825:167734986:167741511:167741725:167742472:167742605,	167741512	167741725	167741720	167741721	Frame_Shift_Ins	-	A	p.E156fs
STAD	TCGA-BR-4362-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102450870:102450925:102452361:102452440:102456280:102456394,	102452362	102452440	102452432	102452433	Frame_Shift_Ins	-	A	p.S255fs
STAD	TCGA-BR-4362-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087884	109087884	Frame_Shift_Del	A	-	p.E700fs
STAD	TCGA-BR-4362-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000243326.5,ENST00000453091.2	chr2	152318925:152318980:152319397:152322634:152324513:152324660,	152319398	152322634	152321163	152321164	Frame_Shift_Ins	-	A	p.E1710fs
STAD	TCGA-BR-4362-01	PSMD1	ENST00000308696.6,ENST00000409643.1,ENST00000373635.4	chr2	231926961:231927035:231927219:231927389:231931619:231931825,	231927220	231927389	231927287	231927288	Frame_Shift_Ins	-	T	p.V67fs
STAD	TCGA-BR-4362-01	PSMD1	ENST00000440838.1	chr2	231926961:231927035:231927219:231927407:231931619:231931825,	231927220	231927407	231927287	231927288	Frame_Shift_Ins	-	T	p.V67fs
STAD	TCGA-BR-4362-01	OCIAD1	ENST00000508293.1,ENST00000513391.2,ENST00000264312.7,ENST00000509122.1,ENST00000381473.3	chr4	48853822:48853992:48859229:48859382:48862741:48862807,	48859230	48859382	48859372	48859373	Frame_Shift_Ins	-	A	p.P235fs
STAD	TCGA-BR-4362-01	INTS12	ENST00000451321.2	chr4	106616718:106616825:106621006:106621171:106629794:106629816,	106621007	106621171	106621122	106621123	Frame_Shift_Ins	-	A	p.L14fs
STAD	TCGA-BR-4362-01	TRIO	ENST00000512070.2	chr5	14485284:14485355:14487572:14487839:14492675:14492923,	14487573	14487839	14487781	14487782	Frame_Shift_Ins	-	C	p.H2348fs
STAD	TCGA-BR-4362-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14487781	14487782	Frame_Shift_Ins	-	C	p.H2348fs
STAD	TCGA-BR-4362-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173391	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-BR-4362-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173391	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-BR-4362-01	DDR1	ENST00000361741.4,ENST00000417521.1	chr6	30862364:30862448:30863180:30863291:30864397:30864642,30862364:30862448:30863180:30863291:30864507:30864642,	30863181	30863291	30863251	30863252	Frame_Shift_Ins	-	C	p.G528fs
STAD	TCGA-BR-4362-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670524	151670525	Frame_Shift_Ins	-	A	p.E333fs
STAD	TCGA-BR-4362-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975473	13975473	Frame_Shift_Del	G	-	p.T139fs
STAD	TCGA-BR-4362-01	CDK14	ENST00000406263.1,ENST00000380050.3,ENST00000436577.2,ENST00000265741.3	chr7	90675211:90675275:90708746:90708795:90741856:90741996,	90708747	90708795	90708770	90708770	Frame_Shift_Del	A	-	p.S376fs
STAD	TCGA-BR-4362-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732039	91732039	Frame_Shift_Del	G	-	p.M3743fs
STAD	TCGA-BR-4362-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732039	91732039	Frame_Shift_Del	G	-	p.M3743fs
STAD	TCGA-BR-4362-01	WDR91	ENST00000344400.5	chr7	134870533:134871067:134871723:134871921:134874095:134874204,	134871724	134871921	134871808	134871809	Frame_Shift_Ins	-	T	p.Q665fs
STAD	TCGA-BR-4362-01	CLU	ENST00000519742.1,ENST00000405140.3,ENST00000522299.1,ENST00000316403.10,ENST00000522413.1,ENST00000523500.1,ENST00000560366.1,ENST00000560566.1,ENST00000520796.1,ENST00000546343.1,ENST00000520491.1,ENST00000523589.1	chr8	27463898:27464041:27466454:27466603:27467991:27468117,	27466455	27466603	27466514	27466515	Frame_Shift_Ins	-	T	p.T74fs
STAD	TCGA-BR-4362-01	NSMCE2	ENST00000517315.1,ENST00000522563.1,ENST00000287437.3	chr8	126369460:126369561:126369953:126370060:126379009:126379317,	126369954	126370060	126369982	126369985	Frame_Shift_Del	AAGT	-	p.K183fs
STAD	TCGA-BR-4362-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-BR-4362-01	PHF21A	ENST00000534766.1	chr11	45959769:45959863:45967390:45967649:45970436:45970497,	45967391	45967649	45967495	45967496	Frame_Shift_Ins	-	G	p.Q449fs
STAD	TCGA-BR-4362-01	PHF21A	ENST00000527401.1,ENST00000418153.2,ENST00000257821.4	chr11	45959769:45959863:45967390:45967554:45970436:45970497,	45967391	45967554	45967495	45967496	Frame_Shift_Ins	-	G	p.Q449fs
STAD	TCGA-BR-4362-01	LGALS12	ENST00000415491.2,ENST00000340246.5,ENST00000394618.3	chr11	63277934:63277973:63278550:63278577:63279223:63279312,	63278551	63278577	63278568	63278569	Frame_Shift_Ins	-	C	p.S206fs
STAD	TCGA-BR-4362-01	DNAJC4	ENST00000321685.3,ENST00000535246.1	chr11	63999981:64000086:64000175:64000337:64001365:64001452,	64000176	64000337	64000186	64000186	Frame_Shift_Del	C	-	p.T126fs
STAD	TCGA-BR-4362-01	DNAJC4	ENST00000321460.5	chr11	63999981:64000086:64000172:64000337:64001365:64001452,	64000173	64000337	64000186	64000186	Frame_Shift_Del	C	-	p.T126fs
STAD	TCGA-BR-4362-01	SCAMP2	ENST00000268099.9,ENST00000566480.1,ENST00000569251.1,ENST00000563829.1	chr15	75137813:75137934:75140940:75141042:75142854:75143014,	75140941	75141042	75140996	75140997	Frame_Shift_Ins	-	A	p.C227fs
STAD	TCGA-BR-4362-01	BFAR	ENST00000566710.1,ENST00000261658.2,ENST00000426842.2	chr16	14738144:14738466:14748922:14749067:14755748:14755922,14743660:14743830:14748922:14749067:14755748:14755922,	14748923	14749067	14749041	14749042	Frame_Shift_Ins	-	C	p.K252fs
STAD	TCGA-BR-4362-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736372	Frame_Shift_Ins	-	C	p.Q1875fs
STAD	TCGA-BR-4362-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53675196:53675387:53679536:53679915:53682875:53683027,	53679537	53679915	53679760	53679760	Frame_Shift_Del	A	-	p.D821fs
STAD	TCGA-BR-4362-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41246532	41246532	Frame_Shift_Del	T	-	p.K339fs
STAD	TCGA-BR-4362-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
STAD	TCGA-BR-4362-01	TM6SF2	ENST00000389363.4,ENST00000431465.2,ENST00000591001.1	chr19	19375174:19375682:19377298:19377418:19378429:19378522,	19377299	19377418	19377330	19377331	Frame_Shift_Del	CA	-	p.W298fs
STAD	TCGA-BR-4362-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838298	42838298	Frame_Shift_Del	G	-	p.W164fs
STAD	TCGA-BR-4362-01	MAMSTR	ENST00000356751.4,ENST00000419611.1,ENST00000318083.6	chr19	49217116:49217302:49218062:49218165:49218518:49218703,49217622:49217817:49218062:49218165:49218518:49218703,	49218063	49218165	49218106	49218107	Frame_Shift_Ins	-	G	p.P162fs
STAD	TCGA-BR-4362-01	NAPSA	ENST00000253719.2	chr19	50861734:50862037:50862267:50862366:50862759:50862904,	50862268	50862366	50862306	50862307	Frame_Shift_Ins	-	C	p.V333fs
STAD	TCGA-BR-4362-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L574fs
STAD	TCGA-BR-4362-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153590609:153590700:153590785:153590946:153591028:153591152,	153590786	153590946	153590824	153590825	Frame_Shift_Ins	-	C	p.A843fs
STAD	TCGA-BR-4363-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048809	42048809	Frame_Shift_Del	G	-	p.H554fs
STAD	TCGA-BR-4363-01	ATP6V1A	ENST00000273398.3,ENST00000538620.1,ENST00000470455.1	chr3	113507559:113507722:113508578:113508687:113513718:113513841,	113508579	113508687	113508677	113508680	Frame_Shift_Del	TATT	-	p.S326fs
STAD	TCGA-BR-4363-01	TCP11	ENST00000444780.2,ENST00000412155.2,ENST00000507706.1,ENST00000418521.2,ENST00000512012.1,ENST00000373974.4,ENST00000311875.5,ENST00000504758.1,ENST00000505911.1,ENST00000505400.1	chr6	35090085:35090114:35096838:35096959:35108981:35109030,35090085:35090114:35096838:35096959:35108523:35108661,35090085:35090114:35096838:35096959:35107796:35108002,35090085:35090114:35096838:35096959:35103883:35103980,	35096839	35096959	35096882	35096883	Frame_Shift_Ins	-	G	p.P118fs
STAD	TCGA-BR-4363-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135201742	135201742	Frame_Shift_Del	A	-	p.F1748fs
STAD	TCGA-BR-4363-01	EHMT1	ENST00000488242.1,ENST00000486164.1,ENST00000462942.1,ENST00000460843.1	chr9	140705912:140706067:140707457:140707625:140707837:140707896,	140707458	140707625	140707505	140707506	Frame_Shift_Del	GA	-	p.G972fs
STAD	TCGA-BR-4363-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
STAD	TCGA-BR-4363-01	ST3GAL4	ENST00000534083.1,ENST00000444328.2,ENST00000526756.1,ENST00000227495.6,ENST00000532243.1,ENST00000526727.1,ENST00000392669.2,ENST00000449406.2,ENST00000530591.1,ENST00000528858.1,ENST00000356132.4,ENST00000534457.1,ENST00000528605.1,ENST00000524860.1	chr11	126277146:126277244:126277468:126277529:126278201:126278391,126277146:126277244:126277468:126277529:126277993:126278071,	126277469	126277529	126277512	126277512	Frame_Shift_Del	C	-	p.I97fs
STAD	TCGA-BR-4363-01	TARBP2	ENST00000394357.2,ENST00000266987.2,ENST00000551741.1,ENST00000547541.1,ENST00000550407.1,ENST00000549679.1,ENST00000547064.1,ENST00000548971.1,ENST00000550147.1,ENST00000551157.2,ENST00000552857.1,ENST00000456234.2,ENST00000552817.1	chr12	53897513:53897592:53898180:53898253:53898395:53898599,53897513:53897592:53898180:53898253:53898481:53898503,	53898181	53898253	53898184	53898185	Frame_Shift_Ins	-	C	p.S142fs
STAD	TCGA-BR-4363-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927827	57927827	Frame_Shift_Del	C	-	p.G198fs
STAD	TCGA-BR-4363-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
STAD	TCGA-BR-4363-01	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000381633.3	chr22	38895404:38895504:38897134:38897285:38901955:38902299,	38897135	38897285	38897211	38897212	Frame_Shift_Ins	-	TT	p.K121fs
STAD	TCGA-BR-4368-01	GRHL3	ENST00000342072.4,ENST00000236255.4,ENST00000361548.4,ENST00000356046.2,ENST00000350501.5,ENST00000528064.1	chr1	24663567:24663641:24664125:24664279:24664481:24664593,	24664126	24664279	24664149	24664150	Frame_Shift_Ins	-	C	p.S237fs
STAD	TCGA-BR-4368-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836080	35836080	Frame_Shift_Del	A	-	p.C344fs
STAD	TCGA-BR-4368-01	USP33	ENST00000370793.1,ENST00000370792.3,ENST00000370794.3,ENST00000524536.1,ENST00000357428.1	chr1	78201740:78201843:78204949:78205102:78206561:78206619,	78204950	78205102	78205026	78205027	Frame_Shift_Ins	-	A	p.L123fs
STAD	TCGA-BR-4368-01	CCDC74B	ENST00000409943.3,ENST00000392984.3,ENST00000310463.6	chr2	130897595:130897669:130897751:130897944:130898730:130898869,	130897752	130897944	130897852	130897852	Frame_Shift_Del	G	-	p.P361fs
STAD	TCGA-BR-4368-01	TMEFF2	ENST00000392314.1,ENST00000272771.5,ENST00000409056.3	chr2	193044393:193044420:193049079:193049209:193056605:193056715,	193049080	193049209	193049182	193049183	Frame_Shift_Del	CA	-	p.G104fs
STAD	TCGA-BR-4368-01	CD28	ENST00000324106.8	chr2	204571246:204571340:204591355:204591712:204594370:204594495,204571415:204571471:204591355:204591712:204594370:204594495,	204591356	204591712	204591543	204591543	Frame_Shift_Del	A	-	p.S80fs
STAD	TCGA-BR-4368-01	P4HTM	ENST00000343546.4	chr3	49042293:49042603:49043150:49043300:49043496:49043620,	49043151	49043300	49043193	49043194	Frame_Shift_Ins	-	C	p.V413fs
STAD	TCGA-BR-4368-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005145	50005146	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-BR-4368-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005145	50005146	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-BR-4368-01	LYAR	ENST00000343470.4,ENST00000452476.1	chr4	4269430:4269750:4270256:4270342:4275309:4275396,	4270257	4270342	4270270	4270271	Frame_Shift_Ins	-	T	p.K331fs
STAD	TCGA-BR-4368-01	INTS12	ENST00000451321.2	chr4	106616718:106616825:106621006:106621171:106629794:106629816,	106621007	106621171	106621122	106621122	Frame_Shift_Del	A	-	p.L14fs
STAD	TCGA-BR-4368-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864163	129864164	Frame_Shift_Ins	-	T	p.K540fs
STAD	TCGA-BR-4368-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1158fs
STAD	TCGA-BR-4368-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402940	52402940	Frame_Shift_Del	G	-	p.P22fs
STAD	TCGA-BR-4368-01	PRRT1	ENST00000375150.2,ENST00000375152.2,ENST00000428778.1	chr6	32118271:32118360:32119585:32119676:32119871:32119879,	32119586	32119676	32119591	32119591	Frame_Shift_Del	T	-	p.K5fs
STAD	TCGA-BR-4368-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000445419.2,ENST00000505222.1,ENST00000503631.1	chr6	82883083:82883155:82891595:82891745:82900789:82900933,	82891596	82891745	82891643	82891644	Frame_Shift_Ins	-	T	p.K1226fs
STAD	TCGA-BR-4368-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086414	144086415	Frame_Shift_Ins	-	A	p.S237fs
STAD	TCGA-BR-4368-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30491486	30491486	Frame_Shift_Del	A	-	p.F516fs
STAD	TCGA-BR-4368-01	PIK3CG	ENST00000496166.1,ENST00000473541.1,ENST00000440650.2,ENST00000359195.3	chr7	106515144:106515248:106519963:106520110:106522561:106522652,	106519964	106520110	106519994	106519994	Frame_Shift_Del	A	-	p.K807fs
STAD	TCGA-BR-4368-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167474	Frame_Shift_Ins	-	A	p.L72fs
STAD	TCGA-BR-4368-01	COL22A1	ENST00000341807.4,ENST00000435777.1,ENST00000303045.6	chr8	139658871:139658925:139661907:139662021:139668139:139668187,	139661908	139662021	139661990	139661990	Frame_Shift_Del	G	-	p.P1122fs
STAD	TCGA-BR-4368-01	SURF1	ENST00000371974.3,ENST00000437995.1	chr9	136221513:136221596:136221678:136221812:136223123:136223175,	136221679	136221812	136221754	136221755	Frame_Shift_Ins	-	T	p.K55fs
STAD	TCGA-BR-4368-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-4368-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-BR-4368-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-BR-4368-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748297	43748297	Frame_Shift_Del	G	-	p.Q832fs
STAD	TCGA-BR-4368-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270150	66270151	Frame_Shift_Ins	-	C	p.G98fs
STAD	TCGA-BR-4368-01	ARL16	ENST00000570910.1	chr17	79648824:79648909:79649063:79650156:79650565:79650624,	79649064	79650156	79650094	79650094	Frame_Shift_Del	C	-	p.C86fs
STAD	TCGA-BR-4368-01	ARL16	ENST00000571082.1	chr17	79649520:79649705:79650042:79650156:79650622:79650696,79649063:79649179:79650042:79650156:79650622:79650696,79649063:79649179:79650042:79650156:79650565:79650624,79649520:79649705:79650042:79650156:79650565:79650624,	79650043	79650156	79650094	79650094	Frame_Shift_Del	C	-	p.C86fs
STAD	TCGA-BR-4368-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289120	31289121	Frame_Shift_Ins	-	C	p.H627fs
STAD	TCGA-BR-4368-01	TSPO	ENST00000583777.1,ENST00000396265.3	chr22	43547578:43547610:43557057:43557196:43558808:43559216,	43557058	43557196	43557100	43557101	Frame_Shift_Del	AG	-	p.T75fs
STAD	TCGA-BR-4370-01	NADK	ENST00000489538.1	chr1	1686812:1686915:1687696:1687782:1687941:1688047,1686110:1686137:1687696:1687782:1687941:1688047,	1687697	1687782	1687734	1687734	Frame_Shift_Del	C	-	p.G183fs
STAD	TCGA-BR-4370-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-BR-4370-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527421	115527422	Frame_Shift_Ins	-	A	p.S878fs
STAD	TCGA-BR-4370-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724116	230724117	Frame_Shift_Ins	-	T	p.K133fs
STAD	TCGA-BR-4370-01	TACC3	ENST00000484651.1,ENST00000313288.4	chr4	1725544:1725597:1729434:1730514:1732613:1732689,	1729435	1730514	1730308	1730309	Frame_Shift_Ins	-	C	p.D393fs
STAD	TCGA-BR-4370-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173391	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-BR-4370-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173391	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-BR-4370-01	CDHR2	ENST00000261944.5,ENST00000510636.1,ENST00000506348.1	chr5	176017425:176017486:176017563:176017688:176018210:176018324,	176017564	176017688	176017672	176017673	Frame_Shift_Ins	-	GT	p.F1174fs
STAD	TCGA-BR-4370-01	SKIV2L	ENST00000375394.2,ENST00000465703.1,ENST00000474839.1,ENST00000461915.1,ENST00000544581.1	chr6	31934604:31934623:31934780:31934918:31935049:31935154,	31934781	31934918	31934881	31934881	Frame_Shift_Del	G	-	p.W814fs
STAD	TCGA-BR-4370-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178990	33178990	Frame_Shift_Del	G	-	p.S170fs
STAD	TCGA-BR-4370-01	ABCB1	ENST00000543898.1,ENST00000265724.3,ENST00000482527.1	chr7	87175264:87175340:87178663:87178834:87179166:87179370,	87178664	87178834	87178807	87178808	Frame_Shift_Del	CT	-	p.G528fs
STAD	TCGA-BR-4370-01	CFTR	ENST00000426809.1,ENST00000003084.6,ENST00000454343.1,ENST00000600166.1	chr7	117292896:117292985:117304741:117304914:117305512:117305618,	117304742	117304914	117304765	117304766	Frame_Shift_Del	AC	-	p.E1329fs
STAD	TCGA-BR-4370-01	RNF32	ENST00000432459.2	chr7	156433572:156433649:156436494:156436586:156437192:156437233,156433464:156433505:156436494:156436586:156437192:156437233,156433477:156433698:156436494:156436586:156437192:156437233,	156436495	156436586	156436577	156436577	Frame_Shift_Del	A	-	p.L2fs
STAD	TCGA-BR-4370-01	SUSD1	ENST00000374264.2,ENST00000355396.3,ENST00000374263.3,ENST00000374270.3	chr9	114820707:114820966:114825216:114825313:114840817:114841004,	114825217	114825313	114825285	114825285	Frame_Shift_Del	A	-	p.T595fs
STAD	TCGA-BR-4370-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-4370-01	GATA3	ENST00000379328.3	chr10	8097249:8097859:8100267:8100804:8105955:8106101,	8100268	8100804	8100728	8100729	Frame_Shift_Ins	-	C	p.F234fs
STAD	TCGA-BR-4370-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673439	Frame_Shift_Ins	-	G	p.R201fs
STAD	TCGA-BR-4370-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770653	Frame_Shift_Ins	-	G	p.P1127fs
STAD	TCGA-BR-4370-01	ARHGEF12	ENST00000529970.1,ENST00000397843.2,ENST00000532993.1,ENST00000356641.3	chr11	120302479:120302620:120308016:120308091:120310837:120310930,	120308017	120308091	120308057	120308057	Frame_Shift_Del	A	-	p.E322fs
STAD	TCGA-BR-4370-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410381	19410382	Frame_Shift_Ins	-	A	p.S149fs
STAD	TCGA-BR-4370-01	CPNE6	ENST00000397016.2,ENST00000537691.1,ENST00000216775.2,ENST00000558995.1,ENST00000460657.1	chr14	24546362:24546599:24546801:24546976:24547096:24547204,	24546802	24546976	24546806	24546807	Frame_Shift_Ins	-	C	p.A569fs
STAD	TCGA-BR-4370-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878534	89878534	Frame_Shift_Del	G	-	p.P96fs
STAD	TCGA-BR-4370-01	B9D1	ENST00000582857.1,ENST00000268841.6,ENST00000395615.1,ENST00000440841.1,ENST00000261499.4,ENST00000395616.3,ENST00000477683.1,ENST00000461069.2	chr17	19261152:19261264:19263632:19263701:19281171:19281203,19261152:19261264:19263632:19263701:19265819:19265855,	19263633	19263701	19263639	19263639	Frame_Shift_Del	G	-	p.P93fs
STAD	TCGA-BR-4370-01	RECQL5	ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73624751:73624842:73625013:73625555:73625787:73625922,	73625014	73625555	73625157	73625158	Frame_Shift_Del	TG	-	p.P782fs
STAD	TCGA-BR-4370-01	CEP76	ENST00000262127.2,ENST00000423709.2,ENST00000590143.1	chr18	12674534:12674752:12678107:12678441:12680660:12680827,	12678108	12678441	12678201	12678201	Frame_Shift_Del	G	-	p.F511fs
STAD	TCGA-BR-4370-01	CACNA1A	ENST00000360228.5,ENST00000573710.2	chr19	13394080:13394210:13395881:13396020:13397316:13397780,	13395882	13396020	13395983	13395984	Frame_Shift_Ins	-	T	p.K1197fs
STAD	TCGA-BR-4370-01	HSD17B14	ENST00000595764.1	chr19	49316712:49316809:49316919:49316987:49318293:49318329,49316365:49316605:49316919:49316987:49318293:49318329,	49316920	49316987	49316984	49316985	Frame_Shift_Ins	-	C	p.A160fs
STAD	TCGA-BR-4370-01	SLC35C2	ENST00000484318.1,ENST00000481809.1	chr20	44986261:44986412:44987025:44987402:44993009:44993020,44986261:44986341:44987025:44987402:44993009:44993020,	44987026	44987402	44987182	44987182	Frame_Shift_Del	G	-	p.A18fs
STAD	TCGA-BR-4370-01	SLC35C2	ENST00000543605.1	chr20	44986261:44986412:44987025:44987197:44987329:44987402,	44987026	44987197	44987182	44987182	Frame_Shift_Del	G	-	p.A18fs
STAD	TCGA-BR-4370-01	SLC35C2	ENST00000243896.2	chr20	44986261:44986412:44987025:44987597:44991724:44991813,44986261:44986412:44987025:44987597:44993009:44993020,	44987026	44987597	44987182	44987182	Frame_Shift_Del	G	-	p.A18fs
STAD	TCGA-BR-4370-01	ZBTB46	ENST00000245663.4,ENST00000395104.1,ENST00000302995.2	chr20	62384038:62384214:62407030:62407315:62421173:62421212,	62407031	62407315	62407046	62407047	Frame_Shift_Ins	-	C	p.A403fs
STAD	TCGA-BR-4370-01	USP9X	ENST00000462850.1,ENST00000324545.8,ENST00000378308.2	chrX	41055503:41055612:41055844:41055991:41056616:41056763,	41055845	41055991	41055854	41055855	Frame_Shift_Del	AG	-	p.A1365fs
STAD	TCGA-BR-6452-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14106661	14106662	Frame_Shift_Del	GA	-	p.D790fs
STAD	TCGA-BR-6452-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.S469fs
STAD	TCGA-BR-6452-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812017	59812017	Frame_Shift_Del	G	-	p.V137fs
STAD	TCGA-BR-6452-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507220	74507221	Frame_Shift_Ins	-	T	p.K465fs
STAD	TCGA-BR-6452-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-BR-6452-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078662	117078663	Frame_Shift_Ins	-	T	p.I185fs
STAD	TCGA-BR-6452-01	DAP3	ENST00000343043.3,ENST00000368336.5,ENST00000421487.2,ENST00000471642.2,ENST00000535183.1	chr1	155701734:155701824:155706736:155706854:155707947:155708320,	155706737	155706854	155706793	155706794	Frame_Shift_Ins	-	A	p.P350fs
STAD	TCGA-BR-6452-01	POGK	ENST00000367875.1,ENST00000449930.1,ENST00000367876.4	chr1	166810191:166810325:166815848:166815975:166816730:166816829,	166815849	166815975	166815880	166815881	Frame_Shift_Ins	-	A	p.Y55fs
STAD	TCGA-BR-6452-01	AHCTF1	ENST00000366508.1,ENST00000326225.3,ENST00000391829.2	chr1	247059136:247059227:247061509:247061638:247062752:247062782,	247061510	247061638	247061597	247061600	Frame_Shift_Del	TTCA	-	p.E521fs
STAD	TCGA-BR-6452-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Ins	-	AG	p.D311fs
STAD	TCGA-BR-6452-01	MRPS5	ENST00000475895.1,ENST00000345084.5,ENST00000272418.2	chr2	95775660:95775786:95780810:95780948:95783609:95783690,	95780811	95780948	95780890	95780891	Frame_Shift_Ins	-	T	p.A66fs
STAD	TCGA-BR-6452-01	RND3	ENST00000263895.4,ENST00000497865.1,ENST00000375734.2,ENST00000472416.1	chr2	151328151:151328275:151331388:151331498:151343207:151343295,	151331389	151331498	151331469	151331469	Frame_Shift_Del	G	-	p.L90fs
STAD	TCGA-BR-6452-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645635	215645635	Frame_Shift_Del	T	-	p.R322fs
STAD	TCGA-BR-6452-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005145	50005146	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-BR-6452-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005145	50005146	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-BR-6452-01	PTPRG	ENST00000295874.10	chr3	62188846:62189624:62204524:62204657:62229480:62229572,	62204525	62204657	62204528	62204528	Frame_Shift_Del	A	-	p.E720fs
STAD	TCGA-BR-6452-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573569	121573569	Frame_Shift_Del	A	-	p.S79fs
STAD	TCGA-BR-6452-01	SMC4	ENST00000472991.1	chr3	160117437:160117485:160120463:160120655:160122165:160122292,160119777:160119881:160120463:160120655:160122115:160122124,160117456:160117537:160120463:160120655:160122115:160122124,	160120464	160120655	160120549	160120550	Frame_Shift_Ins	-	A	p.Q135fs
STAD	TCGA-BR-6452-01	FGFR3	ENST00000340107.4	chr4	1805418:1805563:1806056:1806247:1806550:1806696,1804640:1804791:1806056:1806247:1806550:1806696,	1806057	1806247	1806181	1806182	Frame_Shift_Ins	-	C	p.S400fs
STAD	TCGA-BR-6452-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462464	39462465	Frame_Shift_Ins	-	A	p.D33fs
STAD	TCGA-BR-6452-01	GNPDA2	ENST00000507917.1	chr4	44712969:44713154:44719129:44719312:44724100:44724259,	44719130	44719312	44719210	44719211	Frame_Shift_Ins	-	T	p.N110fs
STAD	TCGA-BR-6452-01	YTHDC1	ENST00000355665.3,ENST00000579690.1,ENST00000344157.4	chr4	69184543:69184580:69185840:69185923:69188466:69188633,	69185841	69185923	69185861	69185862	Frame_Shift_Ins	-	G	p.P555fs
STAD	TCGA-BR-6452-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87688969:87689129:87690921:87691136:87691253:87691352,	87690922	87691136	87690974	87690974	Frame_Shift_Del	T	-	p.S1514fs
STAD	TCGA-BR-6452-01	INTS12	ENST00000451321.2,ENST00000394735.1,ENST00000340139.5	chr4	106607848:106607995:106613132:106613292:106614455:106614643,	106613133	106613292	106613138	106613138	Frame_Shift_Del	T	-	p.R218fs
STAD	TCGA-BR-6452-01	ADAMTS12	ENST00000515401.1,ENST00000352040.3	chr5	33751508:33751653:33881223:33881585:33891834:33892046,	33881224	33881585	33881513	33881513	Frame_Shift_Del	A	-	p.L67fs
STAD	TCGA-BR-6452-01	IL7R	ENST00000509668.1,ENST00000303115.3	chr5	35873635:35873750:35874550:35874644:35875613:35875623,	35874551	35874644	35874637	35874638	Frame_Shift_Ins	-	A	p.W264fs
STAD	TCGA-BR-6452-01	PRKAA1	ENST00000354209.3,ENST00000397128.2,ENST00000505783.1,ENST00000506652.1	chr5	40767773:40767792:40769517:40769605:40771820:40771965,	40769518	40769605	40769572	40769572	Frame_Shift_Del	A	-	p.L196fs
STAD	TCGA-BR-6452-01	FAM81B	ENST00000507832.1,ENST00000283357.5	chr5	94772503:94772610:94782265:94782401:94783972:94784168,	94782266	94782401	94782312	94782312	Frame_Shift_Del	A	-	p.N313fs
STAD	TCGA-BR-6452-01	SHROOM1	ENST00000378676.1	chr5	132159314:132159456:132159541:132160111:132160306:132160308,132159314:132159456:132159541:132160111:132160709:132160765,	132159542	132160111	132159773	132159774	Frame_Shift_Ins	-	C	p.G527fs
STAD	TCGA-BR-6452-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243331	141243332	Frame_Shift_Del	AA	-	p.F855fs
STAD	TCGA-BR-6452-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496636	15496636	Frame_Shift_Del	G	-	p.L393fs
STAD	TCGA-BR-6452-01	NUP153	ENST00000262077.2,ENST00000537253.1	chr6	17616757:17616926:17624791:17625064:17626038:17626395,	17624792	17625064	17624851	17624852	Frame_Shift_Ins	-	G	p.P1372fs
STAD	TCGA-BR-6452-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32818720:32818926:32819885:32820016:32820164:32820279,	32819886	32820016	32819903	32819904	Frame_Shift_Ins	-	A	p.F336fs
STAD	TCGA-BR-6452-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178990	33178991	Frame_Shift_Ins	-	G	p.S170fs
STAD	TCGA-BR-6452-01	ECT2L	ENST00000401414.3,ENST00000423192.1,ENST00000367682.2	chr6	139134308:139134477:139135627:139135740:139159488:139159541,	139135628	139135740	139135710	139135710	Frame_Shift_Del	T	-	p.I50fs
STAD	TCGA-BR-6452-01	ITGB8	ENST00000222573.4,ENST00000537992.1	chr7	20438482:20438617:20441343:20441749:20444250:20444476,	20441344	20441749	20441551	20441554	Frame_Shift_Del	AATA	-	p.E496fs
STAD	TCGA-BR-6452-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
STAD	TCGA-BR-6452-01	ZCWPW1	ENST00000490089.1,ENST00000490721.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100001800:100001867:100002635:100002716:100004316:100004421,	100002636	100002716	100002680	100002680	Frame_Shift_Del	C	-	p.V403fs
STAD	TCGA-BR-6452-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167474	Frame_Shift_Ins	-	A	p.L72fs
STAD	TCGA-BR-6452-01	RAB11FIP1	ENST00000330843.4	chr8	37727937:37728046:37728795:37730697:37732032:37732164,	37728796	37730697	37728933	37728934	Frame_Shift_Ins	-	T	p.K1129fs
STAD	TCGA-BR-6452-01	AP3M2	ENST00000521280.1,ENST00000396926.3,ENST00000174653.3,ENST00000518421.1	chr8	42022944:42023078:42024681:42024889:42025183:42025273,	42024682	42024889	42024863	42024864	Frame_Shift_Del	AC	-	p.G328fs
STAD	TCGA-BR-6452-01	DENND4C	ENST00000380437.4,ENST00000434457.2,ENST00000494124.2,ENST00000380432.2,ENST00000602925.1	chr9	19290755:19290874:19296005:19296244:19298053:19298120,	19296006	19296244	19296164	19296164	Frame_Shift_Del	T	-	p.P84fs
STAD	TCGA-BR-6452-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091523	35091523	Frame_Shift_Del	G	-	p.T788fs
STAD	TCGA-BR-6452-01	TEX10	ENST00000429235.1,ENST00000535814.1,ENST00000374902.4,ENST00000537512.1	chr9	103092212:103092451:103102538:103102651:103108353:103108597,	103102539	103102651	103102604	103102604	Frame_Shift_Del	A	-	p.M396fs
STAD	TCGA-BR-6452-01	PITRM1	ENST00000451104.2,ENST00000224949.4,ENST00000380989.2,ENST00000430362.1	chr10	3199626:3199723:3200231:3200345:3201105:3201150,	3200232	3200345	3200266	3200267	Frame_Shift_Ins	-	T	p.S406fs
STAD	TCGA-BR-6452-01	CUZD1	ENST00000392790.1,ENST00000368904.1,ENST00000545804.1	chr10	124598532:124598747:124600693:124600844:124605277:124605691,	124600694	124600844	124600722	124600723	Frame_Shift_Ins	-	T	p.S69fs
STAD	TCGA-BR-6452-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016001	1016002	Frame_Shift_Ins	-	TGAGA	p.Q2267fs
STAD	TCGA-BR-6452-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820878	10820878	Frame_Shift_Del	T	-	p.Q601fs
STAD	TCGA-BR-6452-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635181	32635181	Frame_Shift_Del	T	-	p.T895fs
STAD	TCGA-BR-6452-01	INPPL1	ENST00000545355.1,ENST00000298229.2,ENST00000538751.1,ENST00000541756.1	chr11	71946339:71946495:71946718:71946797:71946889:71946990,	71946719	71946797	71946764	71946764	Frame_Shift_Del	C	-	p.A902fs
STAD	TCGA-BR-6452-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108163345:108163520:108164039:108164204:108165653:108165786,	108164040	108164204	108164164	108164165	Frame_Shift_Ins	-	A	p.Q1579fs
STAD	TCGA-BR-6452-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
STAD	TCGA-BR-6452-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559114	Frame_Shift_Ins	-	G	p.P1043fs
STAD	TCGA-BR-6452-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641029	96641030	Frame_Shift_Ins	-	C	p.S173fs
STAD	TCGA-BR-6452-01	SCARB1	ENST00000538291.1	chr12	125263044:125263132:125267228:125271049:125271951:125272003,	125267229	125271049	125267352	125267353	Frame_Shift_Ins	-	T	p.K469fs
STAD	TCGA-BR-6452-01	SCARB1	ENST00000261693.6,ENST00000376788.1	chr12	125263044:125263132:125267228:125267357:125270986:125271049,125263044:125263132:125267228:125267357:125270902:125271039,	125267229	125267357	125267352	125267353	Frame_Shift_Ins	-	T	p.K469fs
STAD	TCGA-BR-6452-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262564	25262565	Frame_Shift_Ins	-	G	p.V112fs
STAD	TCGA-BR-6452-01	ZC3H14	ENST00000556000.1,ENST00000554020.1,ENST00000251038.5,ENST00000555900.1,ENST00000393514.5	chr14	89068378:89068427:89069171:89069404:89073586:89073707,	89069172	89069404	89069238	89069239	Frame_Shift_Ins	-	C	p.S527fs
STAD	TCGA-BR-6452-01	ZC3H14	ENST00000555755.1	chr14	89068378:89068427:89069171:89069389:89073586:89073707,	89069172	89069389	89069238	89069239	Frame_Shift_Ins	-	C	p.S527fs
STAD	TCGA-BR-6452-01	MYO1E	ENST00000559489.1,ENST00000288235.4	chr15	59502712:59502799:59506426:59506513:59506838:59506919,	59506427	59506513	59506509	59506509	Frame_Shift_Del	T	-	p.N398fs
STAD	TCGA-BR-6452-01	TAF1C	ENST00000544090.1,ENST00000341690.6	chr16	84212727:84213457:84213551:84213686:84213775:84213934,	84213552	84213686	84213651	84213652	Frame_Shift_Ins	-	G	p.Q534fs
STAD	TCGA-BR-6452-01	TAF1C	ENST00000570117.1,ENST00000566732.1,ENST00000564774.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000564208.1	chr16	84212727:84213457:84213551:84213689:84213775:84213934,	84213552	84213689	84213651	84213652	Frame_Shift_Ins	-	G	p.Q534fs
STAD	TCGA-BR-6452-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579802	2579802	Frame_Shift_Del	A	-	p.T301fs
STAD	TCGA-BR-6452-01	FLII	ENST00000379450.4,ENST00000545457.2,ENST00000578101.1,ENST00000579294.1,ENST00000327031.4	chr17	18151863:18152035:18152113:18152197:18152440:18152515,	18152114	18152197	18152148	18152149	Frame_Shift_Ins	-	C	p.A662fs
STAD	TCGA-BR-6452-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232950	19232951	Frame_Shift_Ins	-	A	p.S467fs
STAD	TCGA-BR-6452-01	TAOK1	ENST00000261716.3	chr17	27837881:27838010:27844470:27844674:27849297:27849537,	27844471	27844674	27844498	27844499	Frame_Shift_Ins	-	A	p.P577fs
STAD	TCGA-BR-6452-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
STAD	TCGA-BR-6452-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
STAD	TCGA-BR-6452-01	RNF157	ENST00000319945.6	chr17	74169782:74169871:74208444:74208563:74236233:74236382,	74208445	74208563	74208460	74208461	Frame_Shift_Ins	-	C	p.G64fs
STAD	TCGA-BR-6452-01	ARL16	ENST00000570910.1	chr17	79648824:79648909:79649063:79650156:79650565:79650624,	79649064	79650156	79650094	79650094	Frame_Shift_Del	C	-	p.C86fs
STAD	TCGA-BR-6452-01	ARL16	ENST00000571082.1	chr17	79649520:79649705:79650042:79650156:79650622:79650696,79649063:79649179:79650042:79650156:79650622:79650696,79649063:79649179:79650042:79650156:79650565:79650624,79649520:79649705:79650042:79650156:79650565:79650624,	79650043	79650156	79650094	79650094	Frame_Shift_Del	C	-	p.C86fs
STAD	TCGA-BR-6452-01	SERPINB7	ENST00000425392.1,ENST00000336429.2,ENST00000431370.1,ENST00000398019.2,ENST00000447428.1,ENST00000546027.1	chr18	61449588:61449774:61460394:61460511:61463499:61463546,61459626:61459677:61460394:61460511:61463499:61463546,	61460395	61460511	61460423	61460424	Frame_Shift_Ins	-	T	p.V83fs
STAD	TCGA-BR-6452-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58442765:58442902:58443467:58443623:58443889:58443935,	58443468	58443623	58443508	58443509	Frame_Shift_Ins	-	T	p.K1316fs
STAD	TCGA-BR-6452-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877230	38877233	Frame_Shift_Del	TCTC	-	p.F122fs
STAD	TCGA-BR-6452-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76939627	76939628	Frame_Shift_Ins	-	A	p.L374fs
STAD	TCGA-BR-6453-01	KCNH8	ENST00000452398.1,ENST00000328405.2	chr3	19389216:19389457:19431972:19432130:19436595:19436769,	19431973	19432130	19432097	19432106	Frame_Shift_Del	TTTTGATCTT	-	p.P312fs
STAD	TCGA-BR-6565-01	LSM12	ENST00000590563.1,ENST00000293406.3,ENST00000591247.1	chr17	42113534:42113668:42114779:42114906:42117514:42117624,	42114780	42114906	42114858	42114859	Frame_Shift_Ins	-	T	p.E139fs
STAD	TCGA-BR-6566-01	INTS3	ENST00000476843.1,ENST00000456435.1,ENST00000435409.2,ENST00000318967.2,ENST00000480659.1,ENST00000512605.1,ENST00000481797.1	chr1	153727117:153727215:153730047:153730239:153732001:153732089,	153730048	153730239	153730153	153730154	Frame_Shift_Ins	-	G	p.C354fs
STAD	TCGA-BR-6566-01	TMEM39A	ENST00000319172.5,ENST00000468676.1,ENST00000486235.1,ENST00000438581.2,ENST00000497993.1	chr3	119171355:119171377:119176864:119177087:119180808:119180855,	119176865	119177087	119176962	119176962	Frame_Shift_Del	A	-	p.F80fs
STAD	TCGA-BR-6566-01	TMEM39A	ENST00000490099.1	chr3	119171355:119171377:119176864:119177031:119180808:119180855,	119176865	119177031	119176962	119176962	Frame_Shift_Del	A	-	p.F80fs
STAD	TCGA-BR-6566-01	VPS41	ENST00000395969.2,ENST00000310301.4	chr7	38807136:38807198:38810797:38810854:38812121:38812237,	38810798	38810854	38810820	38810820	Frame_Shift_Del	T	-	p.N388fs
STAD	TCGA-BR-6566-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732039	91732039	Frame_Shift_Del	G	-	p.M3743fs
STAD	TCGA-BR-6566-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732039	91732039	Frame_Shift_Del	G	-	p.M3743fs
STAD	TCGA-BR-6566-01	DNAJC2	ENST00000475065.1,ENST00000249270.7,ENST00000454277.1,ENST00000379263.3,ENST00000379257.3	chr7	102964044:102964110:102964928:102965009:102966989:102967131,	102964929	102965009	102964992	102964993	Frame_Shift_Ins	-	T	p.N197fs
STAD	TCGA-BR-6566-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167474	Frame_Shift_Ins	-	A	p.L72fs
STAD	TCGA-BR-6566-01	MYBL1	ENST00000522677.3,ENST00000524176.2	chr8	67485598:67485741:67488241:67488610:67492367:67492598,	67488242	67488610	67488453	67488454	Frame_Shift_Ins	-	T	p.N420fs
STAD	TCGA-BR-6566-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124534951:124535774:124536538:124536691:124538476:124538670,	124536539	124536691	124536637	124536638	Frame_Shift_Ins	-	C	p.D994fs
STAD	TCGA-BR-6566-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-6566-01	ACSL5	ENST00000354273.4,ENST00000393081.1,ENST00000433418.1,ENST00000356116.1,ENST00000354655.4	chr10	114168179:114168279:114169264:114169443:114170220:114170253,	114169265	114169443	114169371	114169372	Frame_Shift_Ins	-	C	p.D269fs
STAD	TCGA-BR-6566-01	CEP57	ENST00000325486.5,ENST00000535224.1	chr11	95551990:95552068:95555034:95555142:95555662:95555740,95551990:95552068:95555034:95555142:95560949:95561065,	95555035	95555142	95555113	95555113	Frame_Shift_Del	A	-	p.I259fs
STAD	TCGA-BR-6566-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736154	4736154	Frame_Shift_Del	G	-	p.R639fs
STAD	TCGA-BR-6566-01	NUAK1	ENST00000549704.1,ENST00000261402.2,ENST00000548902.1	chr12	106464551:106464684:106466501:106466621:106477641:106477707,	106466502	106466621	106466564	106466564	Frame_Shift_Del	A	-	p.C213fs
STAD	TCGA-BR-6566-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-6566-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-6566-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-6566-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289120	31289121	Frame_Shift_Ins	-	C	p.H627fs
STAD	TCGA-BR-6566-01	CSAG1	ENST00000361211.5	chrX	151904458:151904518:151908770:151908928:151909138:151909515,	151908771	151908928	151908803	151908804	Frame_Shift_Ins	-	G	p.L14fs
STAD	TCGA-BR-6566-01	CSAG1	ENST00000370287.3,ENST00000452779.2	chrX	151904458:151904518:151908777:151908928:151909138:151909515,	151908778	151908928	151908803	151908804	Frame_Shift_Ins	-	G	p.L14fs
STAD	TCGA-BR-6801-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770653	Frame_Shift_Ins	-	G	p.P1127fs
STAD	TCGA-BR-6801-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921733	Frame_Shift_Ins	-	G	p.P779fs
STAD	TCGA-BR-6802-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530507	Frame_Shift_Ins	-	G	p.F777fs
STAD	TCGA-BR-6802-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60689254	60689255	Frame_Shift_Ins	-	G	p.L265fs
STAD	TCGA-BR-6802-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60689254	60689255	Frame_Shift_Ins	-	G	p.L265fs
STAD	TCGA-BR-6802-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64778861	64778862	Frame_Shift_Ins	-	A	p.I84fs
STAD	TCGA-BR-6802-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561667	210561668	Frame_Shift_Ins	-	A	p.A1471fs
STAD	TCGA-BR-6802-01	DNAH8	ENST00000327475.6,ENST00000441566.1,ENST00000359357.3,ENST00000449981.2	chr6	38830055:38830234:38831648:38831836:38834366:38834453,	38831649	38831836	38831685	38831697	Frame_Shift_Del	AGTTTAACAGAAT	-	p.E2116fs
STAD	TCGA-BR-6802-01	RIMS2	ENST00000262231.10,ENST00000515551.1,ENST00000507677.1,ENST00000507740.1,ENST00000504942.2,ENST00000436393.2,ENST00000408894.2,ENST00000406091.3	chr8	104924359:104924400:104927722:104927822:104928641:104928765,	104927723	104927822	104927779	104927779	Frame_Shift_Del	A	-	p.V401fs
STAD	TCGA-BR-6802-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965545	123965546	Frame_Shift_Ins	-	A	p.G598fs
STAD	TCGA-BR-6802-01	UTP20	ENST00000551825.1,ENST00000261637.4	chr12	101680098:101680287:101682737:101682819:101683914:101684052,	101682738	101682819	101682763	101682764	Frame_Shift_Ins	-	A	p.H180fs
STAD	TCGA-BR-6802-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000574224.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16139692:16139870:16141998:16142160:16146580:16146673,	16141999	16142160	16142120	16142121	Frame_Shift_Ins	-	C	p.A447fs
STAD	TCGA-BR-6803-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765683	50765683	Frame_Shift_Del	C	-	p.L618fs
STAD	TCGA-BR-6852-01	MACF1	ENST00000372915.3,ENST00000530262.1,ENST00000539005.1,ENST00000545844.1,ENST00000496804.1,ENST00000317713.7,ENST00000524432.1,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39784124:39784287:39785335:39785419:39788279:39788387,	39785336	39785419	39785385	39785386	Frame_Shift_Ins	-	A	p.Q1337fs
STAD	TCGA-BR-6852-01	CFLAR	ENST00000309955.3,ENST00000423241.2,ENST00000342795.5,ENST00000340870.5,ENST00000479953.2,ENST00000462763.1,ENST00000355558.4,ENST00000457277.1,ENST00000443227.1	chr2	202000694:202000830:202005079:202005162:202010100:202010155,	202005080	202005162	202005128	202005129	Frame_Shift_Ins	-	A	p.Q191fs
STAD	TCGA-BR-6852-01	MAP2	ENST00000360351.4,ENST00000447185.1	chr2	210561265:210561472:210561640:210561775:210565000:210565062,	210561641	210561775	210561667	210561668	Frame_Shift_Ins	-	A	p.A1471fs
STAD	TCGA-BR-6852-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3	chr2	220503424:220503591:220504203:220504457:220505151:220505321,	220504204	220504457	220504282	220504282	Frame_Shift_Del	G	-	p.L1061fs
STAD	TCGA-BR-6852-01	QARS	ENST00000453392.1,ENST00000497635.1	chr3	49133426:49133512:49135624:49135691:49135785:49135913,	49135625	49135691	49135641	49135641	Frame_Shift_Del	A	-	p.L712fs
STAD	TCGA-BR-6852-01	QARS	ENST00000470113.1,ENST00000459870.1	chr3	49133426:49133512:49135424:49135913:49136032:49136125,	49135425	49135913	49135641	49135641	Frame_Shift_Del	A	-	p.L712fs
STAD	TCGA-BR-6852-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280135	114280135	Frame_Shift_Del	G	-	p.R3454fs
STAD	TCGA-BR-6852-01	DNAJC21	ENST00000382021.2	chr5	34944971:34945130:34945865:34945908:34950274:34950447,34944971:34945130:34945865:34945908:34949647:34949782,	34945866	34945908	34945873	34945874	Frame_Shift_Ins	-	A	p.S383fs
STAD	TCGA-BR-6852-01	DNAJC21	ENST00000514237.1,ENST00000303525.7	chr5	34944971:34945130:34945826:34945908:34950274:34950447,	34945827	34945908	34945873	34945874	Frame_Shift_Ins	-	A	p.S383fs
STAD	TCGA-BR-6852-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-BR-6852-01	BAK1	ENST00000442998.2,ENST00000374467.3,ENST00000360661.5	chr6	33543074:33543218:33543569:33543705:33545311:33545412,	33543570	33543705	33543655	33543655	Frame_Shift_Del	A	-	p.Y41fs
STAD	TCGA-BR-6852-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91670017:91670212:91671359:91671500:91671981:91672085,	91671360	91671500	91671392	91671393	Frame_Shift_Ins	-	AG	p.S1650fs
STAD	TCGA-BR-6852-01	USH1C	ENST00000318024.4,ENST00000529563.1,ENST00000526313.1,ENST00000527720.1,ENST00000527020.1	chr11	17515878:17515923:17518304:17518360:17519708:17519818,	17518305	17518360	17518326	17518327	Frame_Shift_Ins	-	G	p.P542fs
STAD	TCGA-BR-6852-01	SAAL1	ENST00000531751.1	chr11	18105081:18105278:18108412:18108601:18108689:18108753,18102957:18103050:18108412:18108601:18108689:18108753,	18108413	18108601	18108473	18108474	Frame_Shift_Ins	-	A	p.S328fs
STAD	TCGA-BR-6852-01	PTPN5	ENST00000477854.1,ENST00000396170.1,ENST00000358540.2,ENST00000396168.1,ENST00000396171.4,ENST00000396167.2	chr11	18750999:18751113:18751204:18751365:18754138:18754249,	18751205	18751365	18751286	18751287	Frame_Shift_Ins	-	G	p.P470fs
STAD	TCGA-BR-6852-01	GOLT1B	ENST00000539663.1,ENST00000539025.1	chr12	21660050:21660085:21661316:21661495:21665228:21665310,21659818:21659910:21661316:21661495:21665228:21665310,21654786:21654882:21661316:21661495:21665228:21665310,21660877:21661043:21661316:21661495:21665228:21665310,	21661317	21661495	21661406	21661406	Frame_Shift_Del	T	-	p.G69fs
STAD	TCGA-BR-6852-01	ZC3H13	ENST00000282007.3,ENST00000242848.4	chr13	46594583:46594692:46616298:46616410:46619089:46619199,	46616299	46616410	46616337	46616338	Frame_Shift_Ins	-	G	p.Q101fs
STAD	TCGA-BR-6852-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181814	100181815	Frame_Shift_Ins	-	A	p.L142fs
STAD	TCGA-BR-6852-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944500	Frame_Shift_Del	G	-	p.T455fs
STAD	TCGA-BR-6852-01	ABR	ENST00000574437.1,ENST00000536794.2,ENST00000291107.2,ENST00000544583.2,ENST00000574544.1,ENST00000302538.5	chr17	961984:962107:970316:970482:973208:973223,	970317	970482	970397	970397	Frame_Shift_Del	G	-	p.Q368fs
STAD	TCGA-BR-6852-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310486	33310487	Frame_Shift_Ins	-	A	p.T154fs
STAD	TCGA-BR-6852-01	LIG3	ENST00000592690.1	chr17	33307595:33307641:33310250:33310571:33313006:33313150,	33310251	33310571	33310486	33310487	Frame_Shift_Ins	-	A	p.T154fs
STAD	TCGA-BR-6852-01	MAMSTR	ENST00000356751.4,ENST00000419611.1,ENST00000318083.6	chr19	49217116:49217302:49218062:49218165:49218518:49218703,49217622:49217817:49218062:49218165:49218518:49218703,	49218063	49218165	49218106	49218107	Frame_Shift_Ins	-	G	p.P162fs
STAD	TCGA-BR-6852-01	EDN3	ENST00000371028.2,ENST00000337938.2	chr20	57896075:57896248:57897426:57897472:57899385:57899529,	57897427	57897472	57897444	57897445	Frame_Shift_Ins	-	A	p.E187fs
STAD	TCGA-BR-6852-01	EDN3	ENST00000311585.7	chr20	57896075:57896248:57897426:57897507:57899385:57899529,	57897427	57897507	57897444	57897445	Frame_Shift_Ins	-	A	p.E187fs
STAD	TCGA-BR-6852-01	SERPIND1	ENST00000215727.5,ENST00000406799.1	chr22	21133783:21134489:21138259:21138533:21140291:21140436,	21138260	21138533	21138420	21138420	Frame_Shift_Del	G	-	p.V378fs
STAD	TCGA-BR-6852-01	PPEF1	ENST00000543630.1,ENST00000496075.2,ENST00000544635.1,ENST00000349874.5,ENST00000379962.3,ENST00000361511.4,ENST00000359763.6	chrX	18775744:18775859:18779647:18779694:18797127:18797294,	18779648	18779694	18779675	18779676	Frame_Shift_Ins	-	T	p.L180fs
STAD	TCGA-BR-6852-01	SMARCA1	ENST00000371123.1,ENST00000371122.4,ENST00000371121.3	chrX	128602749:128602882:128605180:128605303:128614677:128614791,	128605181	128605303	128605245	128605245	Frame_Shift_Del	T	-	p.K834fs
STAD	TCGA-BR-6852-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939823	137939824	Frame_Shift_Ins	-	G	p.P23fs
STAD	TCGA-BR-7197-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228433113:228433389:228434228:228434504:228437665:228437941,	228434229	228434504	228434288	228434289	Frame_Shift_Ins	-	G	p.A1272fs
STAD	TCGA-BR-7197-01	ELP3	ENST00000521570.1,ENST00000380353.4,ENST00000256398.8,ENST00000518112.1,ENST00000524103.1,ENST00000521015.1,ENST00000523760.1	chr8	27965429:27965493:27967886:27967955:27970535:27970690,	27967887	27967955	27967928	27967929	Frame_Shift_Ins	-	CCTA	p.F145fs
STAD	TCGA-BR-7197-01	FHOD3	ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1	chr18	34289057:34289354:34297794:34298678:34310608:34310767,	34297795	34298678	34298328	34298329	Frame_Shift_Ins	-	CC	p.P1022fs
STAD	TCGA-BR-7703-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959068	111959069	Frame_Shift_Ins	-	T	p.R345fs
STAD	TCGA-BR-7703-01	MTIF2	ENST00000394600.3,ENST00000263629.4,ENST00000403721.1	chr2	55463757:55463956:55464423:55464564:55467146:55467281,	55464424	55464564	55464461	55464461	Frame_Shift_Del	T	-	p.F659fs
STAD	TCGA-BR-7703-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101960	168101961	Frame_Shift_Ins	-	T	p.L1353fs
STAD	TCGA-BR-7703-01	NEK4	ENST00000233027.5,ENST00000535191.1	chr3	52745608:52745885:52771601:52771735:52773444:52773650,	52771602	52771735	52771700	52771701	Frame_Shift_Ins	-	CTAGTCTC	p.V779fs
STAD	TCGA-BR-7703-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89042786:89042944:89052212:89052365:89052954:89053069,	89052213	89052365	89052271	89052272	Frame_Shift_Ins	-	T	p.N158fs
STAD	TCGA-BR-7703-01	USP38	ENST00000307017.4,ENST00000511739.1	chr4	144133470:144133577:144134733:144136096:144141447:144144983,	144134734	144136096	144135593	144135594	Frame_Shift_Ins	-	A	p.A821fs
STAD	TCGA-BR-7703-01	ADAMTS12	ENST00000515401.1,ENST00000352040.3	chr5	33751508:33751653:33881223:33881585:33891834:33892046,	33881224	33881585	33881401	33881402	Frame_Shift_Ins	-	A	p.F104fs
STAD	TCGA-BR-7703-01	CBLL1	ENST00000432748.1,ENST00000440859.3,ENST00000222597.2,ENST00000420796.1	chr7	107394339:107394423:107395862:107395936:107398587:107398625,	107395863	107395936	107395909	107395909	Frame_Shift_Del	A	-	p.E138fs
STAD	TCGA-BR-7703-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
STAD	TCGA-BR-7703-01	TRPM7	ENST00000313478.7,ENST00000560955.1	chr15	50929618:50929790:50931620:50931745:50935536:50935750,	50931621	50931745	50931658	50931659	Frame_Shift_Ins	-	C	p.G208fs
STAD	TCGA-BR-7703-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862229	4862230	Frame_Shift_Ins	-	C	p.G380fs
STAD	TCGA-BR-7703-01	TMC5	ENST00000542583.2,ENST00000396229.2,ENST00000541464.1,ENST00000381414.4	chr16	19451281:19452148:19455402:19455572:19460863:19460953,	19455403	19455572	19455474	19455475	Frame_Shift_Ins	-	G	p.W287fs
STAD	TCGA-BR-7703-01	RNF167	ENST00000262482.6	chr17	4843593:4843655:4843781:4844288:4844371:4844452,	4843782	4844288	4844272	4844273	Frame_Shift_Ins	-	G	p.R23fs
STAD	TCGA-BR-7703-01	RNF167	ENST00000573404.1	chr17	4843593:4843655:4844167:4844288:4844371:4844452,4843781:4844021:4844167:4844288:4844371:4844452,4843414:4843525:4844167:4844288:4844371:4844452,	4844168	4844288	4844272	4844273	Frame_Shift_Ins	-	G	p.R23fs
STAD	TCGA-BR-7703-01	RNF167	ENST00000576229.1	chr17	4843781:4844021:4844217:4844288:4844371:4844452,	4844218	4844288	4844272	4844273	Frame_Shift_Ins	-	G	p.R23fs
STAD	TCGA-BR-7703-01	TMC8	ENST00000589691.1,ENST00000318430.5	chr17	76134085:76134269:76134429:76134560:76134654:76134705,	76134430	76134560	76134524	76134525	Frame_Shift_Ins	-	T	p.L543fs
STAD	TCGA-BR-7703-01	TLE2	ENST00000455444.2,ENST00000262953.6,ENST00000590536.1,ENST00000447365.2,ENST00000591529.1,ENST00000587672.1,ENST00000589205.1,ENST00000426948.2,ENST00000443826.3	chr19	3011019:3011158:3013666:3013816:3014567:3014612,	3013667	3013816	3013796	3013797	Frame_Shift_Ins	-	G	p.P249fs
STAD	TCGA-BR-7707-01	TAL1	ENST00000371884.2,ENST00000294339.3	chr1	47689743:47689770:47691114:47691561:47694867:47695023,	47691115	47691561	47691475	47691476	Frame_Shift_Ins	-	G	p.P29fs
STAD	TCGA-BR-7707-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-BR-7707-01	FBXO41	ENST00000520530.2,ENST00000521871.1,ENST00000295133.5	chr2	73490340:73490436:73490805:73490958:73491065:73491181,	73490806	73490958	73490910	73490910	Frame_Shift_Del	C	-	p.N658fs
STAD	TCGA-BR-7707-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3	chr2	220503424:220503591:220504203:220504457:220505151:220505321,	220504204	220504457	220504282	220504282	Frame_Shift_Del	G	-	p.L1061fs
STAD	TCGA-BR-7707-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543931	Frame_Shift_Ins	-	G	p.S797fs
STAD	TCGA-BR-7707-01	NPHP3	ENST00000326682.8,ENST00000337331.5	chr3	132416103:132416206:132418196:132418294:132418761:132418905,	132418197	132418294	132418283	132418284	Frame_Shift_Ins	-	T	p.K633fs
STAD	TCGA-BR-7707-01	DDX60L	ENST00000505863.1	chr4	169337832:169337948:169341411:169341531:169342910:169343060,	169341412	169341531	169341448	169341449	Frame_Shift_Ins	-	A	p.F826fs
STAD	TCGA-BR-7707-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086414	144086415	Frame_Shift_Ins	-	A	p.S237fs
STAD	TCGA-BR-7707-01	C7orf26	ENST00000472693.1,ENST00000344417.5	chr7	6634065:6634231:6639459:6639987:6641731:6641771,	6639460	6639987	6639539	6639540	Frame_Shift_Ins	-	T	p.T220fs
STAD	TCGA-BR-7707-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
STAD	TCGA-BR-7707-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115590927:115591003:115594639:115594696:115596732:115596847,	115594640	115594696	115594657	115594657	Frame_Shift_Del	T	-	p.K141fs
STAD	TCGA-BR-7707-01	UBE3C	ENST00000348165.5,ENST00000389103.4	chr7	156974801:156975022:156976571:156976723:156979527:156979715,	156976572	156976723	156976641	156976642	Frame_Shift_Del	TC	-	p.V354fs
STAD	TCGA-BR-7707-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128856	68128857	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-BR-7707-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000523287.1,ENST00000520923.1,ENST00000360863.6	chr8	101074818:101074980:101075643:101076271:101078394:101078524,	101075644	101076271	101075899	101075900	Frame_Shift_Ins	-	A	p.L366fs
STAD	TCGA-BR-7707-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000440844.1	chr8	121357684:121357802:121379409:121379487:121381568:121381724,	121379410	121379487	121379471	121379472	Frame_Shift_Ins	-	C	p.G1713fs
STAD	TCGA-BR-7707-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-BR-7707-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218255	134218256	Frame_Shift_Ins	-	C	p.S84fs
STAD	TCGA-BR-7707-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812318	Frame_Shift_Ins	-	G	p.P375fs
STAD	TCGA-BR-7707-01	MS4A12	ENST00000537076.1,ENST00000526784.1	chr11	60264785:60265067:60269455:60269512:60271173:60271290,	60269456	60269512	60269470	60269471	Frame_Shift_Del	CT	-	p.G143fs
STAD	TCGA-BR-7707-01	PYGM	ENST00000377432.3,ENST00000164139.3,ENST00000462303.1	chr11	64518796:64518938:64519068:64519127:64519395:64519487,	64519069	64519127	64519099	64519100	Frame_Shift_Ins	-	A	p.F599fs
STAD	TCGA-BR-7707-01	NADSYN1	ENST00000530055.1,ENST00000525200.1,ENST00000539574.1,ENST00000319023.2,ENST00000529840.1,ENST00000527852.1	chr11	71191800:71191925:71192401:71192450:71193046:71193071,71191800:71191925:71192401:71192450:71192968:71193071,	71192402	71192450	71192429	71192430	Frame_Shift_Ins	-	T	p.D342fs
STAD	TCGA-BR-7707-01	AMHR2	ENST00000550839.1	chr12	53819238:53819271:53819472:53819703:53822679:53822708,	53819473	53819703	53819645	53819646	Frame_Shift_Ins	-	G	p.R265fs
STAD	TCGA-BR-7707-01	TRPV4	ENST00000418703.2,ENST00000537083.1,ENST00000538125.1,ENST00000346520.2,ENST00000536838.1,ENST00000261740.2	chr12	110236418:110236717:110238422:110238563:110240795:110240948,	110238423	110238563	110238437	110238438	Frame_Shift_Ins	-	C	p.G280fs
STAD	TCGA-BR-7707-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862229	4862230	Frame_Shift_Ins	-	C	p.G380fs
STAD	TCGA-BR-7707-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11001305	11001306	Frame_Shift_Ins	-	C	p.S653fs
STAD	TCGA-BR-7707-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11001305	11001306	Frame_Shift_Ins	-	C	p.S653fs
STAD	TCGA-BR-7707-01	KDM4B	ENST00000159111.4,ENST00000536461.1,ENST00000589104.1	chr19	5137972:5138081:5143977:5144163:5144258:5144423,	5143978	5144163	5144151	5144151	Frame_Shift_Del	G	-	p.S942fs
STAD	TCGA-BR-7707-01	POLD1	ENST00000440232.2,ENST00000600859.1,ENST00000599857.1,ENST00000595904.1	chr19	50905034:50905181:50905255:50905381:50905461:50905630,	50905256	50905381	50905324	50905325	Frame_Shift_Ins	-	G	p.R177fs
STAD	TCGA-BR-7851-01	CAMTA1	ENST00000467404.2	chr1	6845611:6845635:6885151:6885270:6931816:6931900,6867047:6867148:6885151:6885270:6931816:6931900,	6885152	6885270	6885240	6885241	Frame_Shift_Ins	-	A	p.P68fs
STAD	TCGA-BR-7851-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474068	Frame_Shift_Ins	-	C	p.G557fs
STAD	TCGA-BR-7851-01	GPSM2	ENST00000264126.3,ENST00000406462.2	chr1	109465038:109465198:109466621:109466836:109472322:109472597,	109466622	109466836	109466682	109466683	Frame_Shift_Del	CA	-	p.S554fs
STAD	TCGA-BR-7851-01	NOTCH2	ENST00000479412.2,ENST00000256646.2	chr1	120529582:120529705:120539619:120539955:120547951:120548211,	120539620	120539955	120539850	120539851	Frame_Shift_Ins	-	A	p.F174fs
STAD	TCGA-BR-7851-01	FAM98A	ENST00000238823.8,ENST00000403368.1	chr2	33812306:33812387:33813401:33813586:33817146:33817281,	33813402	33813586	33813525	33813525	Frame_Shift_Del	T	-	p.A134fs
STAD	TCGA-BR-7851-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169997025	169997026	Frame_Shift_Ins	-	G	p.P4380fs
STAD	TCGA-BR-7851-01	SLC4A3	ENST00000425141.1,ENST00000273063.6,ENST00000317151.3,ENST00000373762.3,ENST00000373760.2,ENST00000358055.3	chr2	220503424:220503591:220504203:220504457:220505151:220505321,	220504204	220504457	220504282	220504282	Frame_Shift_Del	G	-	p.L1061fs
STAD	TCGA-BR-7851-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548598	165548599	Frame_Shift_Del	TG	-	p.Q75fs
STAD	TCGA-BR-7851-01	WDR49	ENST00000453925.2,ENST00000472600.1,ENST00000308378.3,ENST00000476376.1	chr3	167217940:167218087:167223094:167223204:167240102:167240173,	167223095	167223204	167223102	167223102	Frame_Shift_Del	T	-	p.S608fs
STAD	TCGA-BR-7851-01	ABLIM2	ENST00000545242.1,ENST00000361581.5,ENST00000296372.8,ENST00000341937.5	chr4	8021344:8021398:8021928:8022030:8029485:8029584,8021344:8021398:8021928:8022030:8031382:8031503,	8021929	8022030	8021969	8021969	Frame_Shift_Del	G	-	p.S411fs
STAD	TCGA-BR-7851-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74310709:74310839:74313178:74313393:74315051:74315184,	74313179	74313393	74313372	74313372	Frame_Shift_Del	A	-	p.E346fs
STAD	TCGA-BR-7851-01	RICTOR	ENST00000296782.5	chr5	38947365:38947543:38949457:38949529:38949813:38949901,	38949458	38949529	38949500	38949500	Frame_Shift_Del	C	-	p.G1389fs
STAD	TCGA-BR-7851-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627690	137627690	Frame_Shift_Del	T	-	p.K322fs
STAD	TCGA-BR-7851-01	PTPRK	ENST00000368227.3,ENST00000368226.4,ENST00000368210.3,ENST00000531050.1,ENST00000524534.1,ENST00000368213.5,ENST00000524481.1,ENST00000368215.3,ENST00000368207.3,ENST00000532331.1	chr6	128404859:128404969:128410834:128411137:128505576:128505870,	128410835	128411137	128411122	128411123	Frame_Shift_Ins	-	G	p.P393fs
STAD	TCGA-BR-7851-01	ZCWPW1	ENST00000472716.1	chr7	100016768:100016812:100017252:100017436:100018244:100018301,	100017253	100017436	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-BR-7851-01	ZCWPW1	ENST00000464510.1,ENST00000360951.4,ENST00000398027.2,ENST00000324725.6	chr7	100016768:100016812:100017252:100017506:100018244:100018301,	100017253	100017506	100017294	100017294	Frame_Shift_Del	T	-	p.R81fs
STAD	TCGA-BR-7851-01	SMC2	ENST00000374793.3,ENST00000303219.8,ENST00000374787.3,ENST00000286398.7	chr9	106876971:106877110:106878480:106878600:106880451:106880656,	106878481	106878600	106878506	106878507	Frame_Shift_Ins	-	G	p.R566fs
STAD	TCGA-BR-7851-01	RABGAP1	ENST00000373647.4,ENST00000459903.1,ENST00000317419.7	chr9	125719427:125719488:125746763:125746998:125748493:125748695,	125746764	125746998	125746957	125746957	Frame_Shift_Del	A	-	p.Q115fs
STAD	TCGA-BR-7851-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.G23fs
STAD	TCGA-BR-7851-01	TM9SF3	ENST00000371142.4	chr10	98290296:98290365:98292807:98292947:98303832:98303963,	98292808	98292947	98292921	98292921	Frame_Shift_Del	A	-	p.V405fs
STAD	TCGA-BR-7851-01	CTNND1	ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000531007.1,ENST00000526772.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57577616:57577695:57578870:57578958:57582865:57582953,57577616:57577695:57578870:57578958:57581782:57581845,	57578871	57578958	57578950	57578951	Frame_Shift_Ins	-	A	p.Q877fs
STAD	TCGA-BR-7851-01	CD6	ENST00000346437.4,ENST00000344931.5,ENST00000352009.5,ENST00000452451.2,ENST00000313421.7,ENST00000344028.5	chr11	60776005:60776317:60777043:60777346:60778541:60778607,	60777044	60777346	60777127	60777128	Frame_Shift_Ins	-	GT	p.T288fs
STAD	TCGA-BR-7851-01	WBP4	ENST00000542082.1,ENST00000379487.3	chr13	41642696:41642873:41645662:41645709:41646917:41646993,	41645663	41645709	41645703	41645704	Frame_Shift_Ins	-	A	p.L160fs
STAD	TCGA-BR-7851-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562545	32562545	Frame_Shift_Del	T	-	p.D890fs
STAD	TCGA-BR-7851-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265533	75265533	Frame_Shift_Del	A	-	p.E1178fs
STAD	TCGA-BR-7851-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878534	89878534	Frame_Shift_Del	G	-	p.P96fs
STAD	TCGA-BR-7851-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000545570.1,ENST00000395532.4,ENST00000359285.5,ENST00000322610.8	chr16	28880597:28880704:28883100:28883304:28883510:28883722,	28883101	28883304	28883208	28883209	Frame_Shift_Ins	-	C	p.L472fs
STAD	TCGA-BR-7851-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89349641	89349642	Frame_Shift_Ins	-	T	p.K1103fs
STAD	TCGA-BR-7851-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41246532	41246532	Frame_Shift_Del	T	-	p.K339fs
STAD	TCGA-BR-7851-01	TANC2	ENST00000583356.1,ENST00000424789.2,ENST00000389520.4	chr17	61428610:61428777:61432143:61432751:61457078:61457187,	61432144	61432751	61432175	61432176	Frame_Shift_Ins	-	T	p.I595fs
STAD	TCGA-BR-7851-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270150	66270151	Frame_Shift_Ins	-	C	p.G98fs
STAD	TCGA-BR-7851-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996513	45996513	Frame_Shift_Del	G	-	p.P313fs
STAD	TCGA-BR-7851-01	DMPK	ENST00000588522.1,ENST00000291270.4,ENST00000596686.1,ENST00000343373.4	chr19	46278206:46278292:46280584:46280848:46280924:46280981,	46280585	46280848	46280835	46280836	Frame_Shift_Del	AG	-	p.L325fs
STAD	TCGA-BR-7851-01	DMPK	ENST00000354227.5,ENST00000458663.2,ENST00000600757.1,ENST00000447742.2	chr19	46278206:46278292:46280599:46280848:46280924:46280981,	46280600	46280848	46280835	46280836	Frame_Shift_Del	AG	-	p.L325fs
STAD	TCGA-BR-7851-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-BR-7851-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-BR-7851-01	FTCD	ENST00000355384.2,ENST00000359679.2,ENST00000498355.2,ENST00000397748.1,ENST00000397746.3,ENST00000291670.5,ENST00000397743.1	chr21	47570301:47570439:47571471:47571651:47571805:47571894,	47571472	47571651	47571591	47571592	Frame_Shift_Ins	-	C	p.A173fs
STAD	TCGA-BR-7851-01	PLXNB2	ENST00000479701.1,ENST00000463165.1,ENST00000359337.4,ENST00000449103.1	chr22	50717283:50717440:50718058:50718205:50718433:50718500,	50718059	50718205	50718147	50718147	Frame_Shift_Del	T	-	p.K1434fs
STAD	TCGA-BR-7958-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000452905.2,ENST00000476245.1,ENST00000393434.2	chr3	125849065:125849136:125850226:125850377:125854377:125854505,	125850227	125850377	125850299	125850312	Frame_Shift_Del	CAGCGTGTAGACGG	-	p.A513fs
STAD	TCGA-BR-8059-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277936	186277937	Frame_Shift_Ins	-	A	p.P1028fs
STAD	TCGA-BR-8059-01	CLIP4	ENST00000404424.1,ENST00000415891.1,ENST00000401617.2,ENST00000401605.1,ENST00000456385.1,ENST00000320081.5	chr2	29375550:29375694:29379219:29379309:29380069:29380213,	29379220	29379309	29379233	29379233	Frame_Shift_Del	A	-	p.S393fs
STAD	TCGA-BR-8059-01	MFSD10	ENST00000507272.1	chr4	2934077:2934239:2934326:2934417:2934832:2934904,	2934327	2934417	2934406	2934407	Frame_Shift_Ins	-	C	p.G151fs
STAD	TCGA-BR-8059-01	MFSD10	ENST00000503596.1	chr4	2934077:2934239:2934326:2934485:2934832:2934904,2934077:2934136:2934326:2934485:2934832:2934904,	2934327	2934485	2934406	2934407	Frame_Shift_Ins	-	C	p.G151fs
STAD	TCGA-BR-8059-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485489	Frame_Shift_Ins	-	G	p.T1314fs
STAD	TCGA-BR-8059-01	ANLN	ENST00000396068.2	chr7	36450667:36450775:36455366:36455493:36456688:36456757,36450667:36450775:36455366:36455493:36458852:36459076,	36455367	36455493	36455394	36455394	Frame_Shift_Del	A	-	p.L474fs
STAD	TCGA-BR-8059-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134463921:134464009:134503895:134503959:134511319:134511423,	134503896	134503959	134503931	134503931	Frame_Shift_Del	A	-	p.L114fs
STAD	TCGA-BR-8059-01	VWF	ENST00000261405.5	chr12	6145553:6145657:6153456:6153617:6155888:6155983,	6153457	6153617	6153589	6153589	Frame_Shift_Del	G	-	p.M771fs
STAD	TCGA-BR-8059-01	CCDC60	ENST00000327554.2	chr12	119926563:119926671:119937882:119937973:119942873:119943108,	119937883	119937973	119937911	119937911	Frame_Shift_Del	A	-	p.I195fs
STAD	TCGA-BR-8059-01	TERF2	ENST00000603068.1,ENST00000254942.3	chr16	69390236:69390959:69391420:69391464:69395306:69395374,	69391421	69391464	69391425	69391425	Frame_Shift_Del	T	-	p.K447fs
STAD	TCGA-BR-8077-01	SRBD1	ENST00000535761.1,ENST00000490133.1,ENST00000263736.4	chr2	45616231:45616738:45620083:45620268:45640252:45640432,	45620084	45620268	45620207	45620208	Frame_Shift_Ins	-	T	p.I859fs
STAD	TCGA-BR-8077-01	ZSCAN18	ENST00000600404.1,ENST00000594191.1,ENST00000240727.6,ENST00000601144.1	chr19	58598682:58598771:58600054:58600204:58601231:58601328,	58600055	58600204	58600101	58600102	Frame_Shift_Ins	-	G	p.P225fs
STAD	TCGA-BR-8078-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226332	21226333	Frame_Shift_Ins	-	T	p.K563fs
STAD	TCGA-BR-8078-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120890	46120891	Frame_Shift_Ins	-	A	p.F54fs
STAD	TCGA-BR-8078-01	LMNA	ENST00000498722.2,ENST00000496738.1,ENST00000368299.3,ENST00000508500.1,ENST00000361308.4,ENST00000368297.1,ENST00000448611.2,ENST00000347559.2,ENST00000368301.2,ENST00000392353.3,ENST00000368300.4,ENST00000473598.2	chr1	156105877:156105912:156106004:156106227:156106711:156106819,	156106005	156106227	156106016	156106017	Frame_Shift_Ins	-	C	p.S390fs
STAD	TCGA-BR-8078-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694023	156694024	Frame_Shift_Ins	-	G	p.L289fs
STAD	TCGA-BR-8078-01	OBSCN	ENST00000366709.4,ENST00000570156.2,ENST00000284548.11,ENST00000366707.4,ENST00000422127.1	chr1	228433113:228433389:228434228:228434504:228437665:228437941,	228434229	228434504	228434288	228434289	Frame_Shift_Ins	-	G	p.A1272fs
STAD	TCGA-BR-8078-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176136	63176137	Frame_Shift_Ins	-	A	p.I753fs
STAD	TCGA-BR-8078-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109384718	109384718	Frame_Shift_Del	A	-	p.P2574fs
STAD	TCGA-BR-8078-01	NOSTRIN	ENST00000397206.2,ENST00000444448.2,ENST00000458381.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2,ENST00000472260.1	chr2	169716021:169716147:169717304:169717419:169718469:169718559,	169717305	169717419	169717340	169717340	Frame_Shift_Del	T	-	p.P405fs
STAD	TCGA-BR-8078-01	AGAP1	ENST00000409538.1,ENST00000336665.5	chr2	236839408:236839567:236877105:236877267:236945204:236945341,236817485:236817550:236877105:236877267:236945204:236945341,	236877106	236877267	236877177	236877177	Frame_Shift_Del	C	-	p.P518fs
STAD	TCGA-BR-8078-01	GORASP1	ENST00000422110.2	chr3	39140925:39140994:39141795:39141945:39142506:39142593,	39141796	39141945	39141847	39141848	Frame_Shift_Ins	-	G	p.P238fs
STAD	TCGA-BR-8078-01	GORASP1	ENST00000441302.2	chr3	39140925:39140994:39141795:39142368:39142506:39142593,	39141796	39142368	39141847	39141848	Frame_Shift_Ins	-	G	p.P238fs
STAD	TCGA-BR-8078-01	ZNF589	ENST00000448461.1	chr3	48302302:48302429:48309404:48312459:48327735:48328120,	48309405	48312459	48309594	48309594	Frame_Shift_Del	G	-	p.R138fs
STAD	TCGA-BR-8078-01	ZNF589	ENST00000440261.2	chr3	48302302:48302429:48309407:48309650:48327735:48328120,	48309408	48309650	48309594	48309594	Frame_Shift_Del	G	-	p.R138fs
STAD	TCGA-BR-8078-01	MAGI1	ENST00000483466.1,ENST00000472257.1,ENST00000463103.2	chr3	65350527:65350621:65361419:65361623:65364935:65365229,	65361420	65361623	65361571	65361572	Frame_Shift_Ins	-	C	p.G1015fs
STAD	TCGA-BR-8078-01	MAGI1	ENST00000402939.2,ENST00000460329.2,ENST00000330909.8	chr3	65350527:65350621:65361419:65361620:65364935:65365229,	65361420	65361620	65361571	65361572	Frame_Shift_Ins	-	C	p.G1015fs
STAD	TCGA-BR-8078-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413710	138413710	Frame_Shift_Del	G	-	p.R604fs
STAD	TCGA-BR-8078-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408081	179408081	Frame_Shift_Del	T	-	p.I116fs
STAD	TCGA-BR-8078-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194146070:194146258:194147803:194147981:194149573:194149646,	194147804	194147981	194147850	194147851	Frame_Shift_Ins	-	A	p.W1027fs
STAD	TCGA-BR-8078-01	ACOX3	ENST00000503233.1,ENST00000413009.2,ENST00000356406.5,ENST00000510365.1	chr4	8407681:8407770:8411938:8412082:8416018:8416108,	8411939	8412082	8412063	8412064	Frame_Shift_Ins	-	G	p.P188fs
STAD	TCGA-BR-8078-01	MGST2	ENST00000515067.1,ENST00000515137.1,ENST00000265498.1,ENST00000503816.1	chr4	140616350:140616421:140624608:140624690:140625169:140625222,	140624609	140624690	140624683	140624683	Frame_Shift_Del	A	-	p.A101fs
STAD	TCGA-BR-8078-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173391	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-BR-8078-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173391	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-BR-8078-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-BR-8078-01	PNLDC1	ENST00000392167.3,ENST00000275275.5,ENST00000610273.1	chr6	160229771:160229848:160230046:160230190:160231057:160231127,	160230047	160230190	160230161	160230161	Frame_Shift_Del	T	-	p.V251fs
STAD	TCGA-BR-8078-01	ASNS	ENST00000422745.1,ENST00000394308.3,ENST00000394309.3,ENST00000437628.1,ENST00000175506.4,ENST00000454046.1,ENST00000444334.1,ENST00000455086.1	chr7	97487589:97487717:97488165:97488267:97488524:97488710,	97488166	97488267	97488171	97488171	Frame_Shift_Del	A	-	p.L257fs
STAD	TCGA-BR-8078-01	GPC2	ENST00000480087.1,ENST00000471050.1,ENST00000292377.2,ENST00000490629.1	chr7	99769812:99769840:99771457:99771620:99772307:99772347,	99771458	99771620	99771554	99771554	Frame_Shift_Del	C	-	p.V266fs
STAD	TCGA-BR-8078-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107592453:107592668:107593974:107594199:107595911:107596075,	107593975	107594199	107594141	107594142	Frame_Shift_Ins	-	C	p.G995fs
STAD	TCGA-BR-8078-01	EPHX2	ENST00000380476.3,ENST00000521780.1,ENST00000521400.1,ENST00000521924.1,ENST00000518379.1,ENST00000520623.1	chr8	27362563:27362663:27364388:27364511:27369352:27369427,	27364389	27364511	27364393	27364394	Frame_Shift_Ins	-	T	p.V181fs
STAD	TCGA-BR-8078-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36766828:36767053:36768447:36768637:36776340:36776415,	36768448	36768637	36768518	36768519	Frame_Shift_Ins	-	C	p.S801fs
STAD	TCGA-BR-8078-01	WISP1	ENST00000250160.6	chr8	134225106:134225386:134232823:134233084:134237632:134237826,	134232824	134233084	134232957	134232958	Frame_Shift_Ins	-	C	p.R161fs
STAD	TCGA-BR-8078-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680350	18680351	Frame_Shift_Ins	-	G	p.C392fs
STAD	TCGA-BR-8078-01	PTGR1	ENST00000422125.1,ENST00000238248.3,ENST00000407693.2,ENST00000374313.1	chr9	114356501:114356547:114359596:114359712:114361882:114361975,	114359597	114359712	114359602	114359602	Frame_Shift_Del	T	-	p.N34fs
STAD	TCGA-BR-8078-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218281	134218281	Frame_Shift_Del	C	-	p.Q92fs
STAD	TCGA-BR-8078-01	MACROD1	ENST00000542359.1,ENST00000255681.6	chr11	63782723:63782753:63918710:63918827:63919763:63919865,	63918711	63918827	63918791	63918791	Frame_Shift_Del	T	-	p.K146fs
STAD	TCGA-BR-8078-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40697749:40697936:40699586:40699768:40702268:40702498,	40699587	40699768	40699673	40699674	Frame_Shift_Ins	-	G	p.M1288fs
STAD	TCGA-BR-8078-01	HDAC7	ENST00000463732.1,ENST00000470668.1,ENST00000380610.4,ENST00000485796.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48188651:48188716:48188966:48189163:48189369:48189393,	48188967	48189163	48189045	48189046	Frame_Shift_Ins	-	G	p.P402fs
STAD	TCGA-BR-8078-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927806	57927806	Frame_Shift_Del	G	-	p.P205fs
STAD	TCGA-BR-8078-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
STAD	TCGA-BR-8078-01	ACAD10	ENST00000455480.2,ENST00000549590.1,ENST00000413681.3,ENST00000509936.1,ENST00000313698.4,ENST00000507135.1,ENST00000392636.2	chr12	112130500:112130700:112139965:112140114:112143541:112143736,	112139966	112140114	112140078	112140079	Frame_Shift_Ins	-	T	p.G100fs
STAD	TCGA-BR-8078-01	OAS1	ENST00000549820.1	chr12	113344856:113345024:113346340:113346629:113348855:113349040,113344856:113345024:113346340:113346629:113348902:113349040,	113346341	113346629	113346491	113346492	Frame_Shift_Del	AG	-	p.Q110fs
STAD	TCGA-BR-8078-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77671705	77671706	Frame_Shift_Ins	-	T	p.K3195fs
STAD	TCGA-BR-8078-01	TINF2	ENST00000540705.1	chr14	24710409:24710517:24710880:24710982:24711095:24711127,24710409:24710517:24710880:24710982:24711346:24711494,	24710881	24710982	24710897	24710898	Frame_Shift_Ins	-	A	p.L128fs
STAD	TCGA-BR-8078-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265533	75265533	Frame_Shift_Del	A	-	p.E1178fs
STAD	TCGA-BR-8078-01	MYO5C	ENST00000559696.1,ENST00000261839.7	chr15	52500750:52500840:52503926:52504081:52505384:52505483,	52503927	52504081	52504011	52504012	Frame_Shift_Ins	-	CA	p.V1404fs
STAD	TCGA-BR-8078-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-BR-8078-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-BR-8078-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-BR-8078-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-BR-8078-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-8078-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-8078-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-8078-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Ins	-	CT	p.R1893fs
STAD	TCGA-BR-8078-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448299	Frame_Shift_Ins	-	G	p.R117fs
STAD	TCGA-BR-8078-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255186	9255187	Frame_Shift_Ins	-	A	p.L640fs
STAD	TCGA-BR-8078-01	ZSCAN18	ENST00000600404.1,ENST00000594191.1,ENST00000240727.6,ENST00000601144.1	chr19	58598682:58598771:58600054:58600204:58601231:58601328,	58600055	58600204	58600101	58600102	Frame_Shift_Ins	-	G	p.P225fs
STAD	TCGA-BR-8081-01	HSPG2	ENST00000430507.1,ENST00000374695.3	chr1	22175385:22175524:22176533:22176685:22176855:22176991,	22176534	22176685	22176669	22176669	Frame_Shift_Del	G	-	p.T2439fs
STAD	TCGA-BR-8081-01	LRRC41	ENST00000472710.1,ENST00000343304.6	chr1	46746796:46747057:46751033:46752171:46763234:46763305,	46751034	46752171	46751495	46751496	Frame_Shift_Ins	-	G	p.P345fs
STAD	TCGA-BR-8081-01	CAPN10	ENST00000391984.2,ENST00000270361.11,ENST00000494738.1,ENST00000404753.3	chr2	241535869:241535938:241536097:241536359:241537304:241537394,	241536098	241536359	241536127	241536127	Frame_Shift_Del	C	-	p.T504fs
STAD	TCGA-BR-8081-01	IL17RE	ENST00000421412.1,ENST00000454190.2,ENST00000295980.3,ENST00000383814.3,ENST00000383815.3,ENST00000434065.1	chr3	9949922:9949991:9950900:9950967:9952548:9952724,	9950901	9950967	9950934	9950934	Frame_Shift_Del	A	-	p.R296fs
STAD	TCGA-BR-8081-01	ETV5	ENST00000537818.1,ENST00000306376.5,ENST00000434744.1,ENST00000480706.1	chr3	185766603:185766649:185769818:185769920:185774863:185775033,	185769819	185769920	185769835	185769835	Frame_Shift_Del	T	-	p.K474fs
STAD	TCGA-BR-8081-01	TFRC	ENST00000392396.3,ENST00000540528.1,ENST00000420415.1,ENST00000535031.1,ENST00000360110.4	chr3	195794902:195795001:195796325:195796439:195798266:195798369,	195796326	195796439	195796404	195796404	Frame_Shift_Del	T	-	p.D242fs
STAD	TCGA-BR-8081-01	KIAA0232	ENST00000307659.5,ENST00000425103.1	chr4	6825911:6826411:6843793:6843931:6858890:6858957,	6843794	6843931	6843887	6843888	Frame_Shift_Ins	-	A	p.M108fs
STAD	TCGA-BR-8081-01	SULT1B1	ENST00000310613.3	chr4	70596218:70596399:70599130:70599225:70599855:70599982,	70599131	70599225	70599153	70599153	Frame_Shift_Del	A	-	p.L192fs
STAD	TCGA-BR-8081-01	PLK4	ENST00000270861.5,ENST00000514379.1,ENST00000515069.1,ENST00000513090.1,ENST00000507249.1	chr4	128813519:128813669:128814439:128814573:128814667:128814759,	128814440	128814573	128814507	128814507	Frame_Shift_Del	A	-	p.L752fs
STAD	TCGA-BR-8081-01	WDR70	ENST00000511906.1,ENST00000510699.1,ENST00000265107.4	chr5	37697756:37697856:37701159:37701244:37703050:37703106,	37701160	37701244	37701208	37701209	Frame_Shift_Ins	-	T	p.L414fs
STAD	TCGA-BR-8081-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627690	137627691	Frame_Shift_Ins	-	T	p.K322fs
STAD	TCGA-BR-8081-01	MYB	ENST00000526565.1,ENST00000528774.1,ENST00000341911.5	chr6	135516885:135517055:135518098:135518461:135520045:135520188,135516885:135517140:135518098:135518461:135520045:135520188,	135518099	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
STAD	TCGA-BR-8081-01	MYB	ENST00000533384.1	chr6	135516885:135517140:135517863:135518461:135520045:135520188,	135517864	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
STAD	TCGA-BR-8081-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508009	158508010	Frame_Shift_Ins	-	C	p.R1110fs
STAD	TCGA-BR-8081-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158924563	158924564	Frame_Shift_Ins	-	C	p.K1289fs
STAD	TCGA-BR-8081-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72400477:72400649:72409128:72409220:72409874:72409948,	72409129	72409220	72409181	72409181	Frame_Shift_Del	C	-	p.S443fs
STAD	TCGA-BR-8081-01	OXR1	ENST00000445937.1,ENST00000438229.2,ENST00000312046.6,ENST00000442977.2,ENST00000531443.1,ENST00000452423.2,ENST00000517566.2,ENST00000497705.1	chr8	107704955:107705105:107715133:107715318:107718609:107719082,	107715134	107715318	107715191	107715191	Frame_Shift_Del	A	-	p.H245fs
STAD	TCGA-BR-8081-01	WDR37	ENST00000263150.4,ENST00000482165.1,ENST00000358220.1	chr10	1170157:1170292:1170849:1170964:1175152:1175192,	1170850	1170964	1170870	1170870	Frame_Shift_Del	A	-	p.Q421fs
STAD	TCGA-BR-8081-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016540	1016543	Frame_Shift_Del	GAAG	-	p.F2087fs
STAD	TCGA-BR-8081-01	MUC5B	ENST00000525715.1,ENST00000529681.1,ENST00000447027.1	chr11	1250919:1251037:1251234:1251373:1251719:1251830,	1251235	1251373	1251245	1251246	Frame_Shift_Ins	-	G	p.S410fs
STAD	TCGA-BR-8081-01	HIPK3	ENST00000525975.1,ENST00000303296.4,ENST00000456517.1,ENST00000379016.3	chr11	33350145:33350179:33358620:33358740:33360302:33360388,	33358621	33358740	33358693	33358694	Frame_Shift_Ins	-	T	p.R431fs
STAD	TCGA-BR-8081-01	ARHGAP9	ENST00000552604.1,ENST00000550454.1	chr12	57870159:57870237:57870372:57870434:57870938:57871052,	57870373	57870434	57870384	57870384	Frame_Shift_Del	C	-	p.R410fs
STAD	TCGA-BR-8081-01	ARHGAP9	ENST00000548148.1,ENST00000546200.1	chr12	57870159:57870237:57870372:57870746:57870938:57871052,	57870373	57870746	57870384	57870384	Frame_Shift_Del	C	-	p.R410fs
STAD	TCGA-BR-8081-01	APPL2	ENST00000547809.1,ENST00000549974.1,ENST00000549573.1,ENST00000539978.2,ENST00000547439.1,ENST00000551662.1,ENST00000550648.1,ENST00000258530.3	chr12	105597480:105597563:105600838:105600985:105601748:105601767,	105600839	105600985	105600965	105600966	Frame_Shift_Del	TT	-	p.K171fs
STAD	TCGA-BR-8081-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25276072:25276209:25280450:25280601:25281160:25281329,	25280451	25280601	25280558	25280558	Frame_Shift_Del	C	-	p.S715fs
STAD	TCGA-BR-8081-01	UBAC2	ENST00000376440.2	chr13	99896768:99896878:99966350:99966474:99970275:99970323,99890680:99890808:99966350:99966474:99970275:99970323,	99966351	99966474	99966382	99966382	Frame_Shift_Del	T	-	p.P162fs
STAD	TCGA-BR-8081-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562346	32562347	Frame_Shift_Ins	-	A	p.E824fs
STAD	TCGA-BR-8081-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265533	75265533	Frame_Shift_Del	A	-	p.E1178fs
STAD	TCGA-BR-8081-01	IL16	ENST00000560115.1,ENST00000394660.2,ENST00000559388.1,ENST00000558332.1	chr15	81595889:81595991:81598248:81598507:81598763:81598867,	81598249	81598507	81598461	81598462	Frame_Shift_Del	CT	-	p.D1211fs
STAD	TCGA-BR-8081-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645340	Frame_Shift_Ins	-	A	p.A201fs
STAD	TCGA-BR-8081-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577036	7577036	Frame_Shift_Del	G	-	p.P301fs
STAD	TCGA-BR-8081-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328259	40328260	Frame_Shift_Ins	-	C	p.G214fs
STAD	TCGA-BR-8081-01	PSMD12	ENST00000578015.1,ENST00000584289.1	chr17	65353418:65353547:65353634:65353694:65362527:65362635,	65353635	65353694	65353654	65353655	Frame_Shift_Del	AG	-	p.L50fs
STAD	TCGA-BR-8081-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996513	45996513	Frame_Shift_Del	G	-	p.P313fs
STAD	TCGA-BR-8081-01	GYS1	ENST00000323798.3,ENST00000541188.1,ENST00000472004.1,ENST00000544287.1,ENST00000263276.6,ENST00000496048.1	chr19	49477469:49477596:49477876:49477990:49481180:49481243,	49477877	49477990	49477974	49477974	Frame_Shift_Del	G	-	p.P442fs
STAD	TCGA-BR-8081-01	CHEK2	ENST00000382580.2,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000433728.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000405598.1,ENST00000382566.1,ENST00000544772.1,ENST00000404276.1	chr22	29091114:29091230:29091697:29091861:29095825:29095925,29091114:29091230:29091697:29091861:29092888:29092975,	29091698	29091861	29091778	29091778	Frame_Shift_Del	A	-	p.E394fs
STAD	TCGA-BR-8284-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
STAD	TCGA-BR-8284-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57576745:57576938:57577580:57577695:57578870:57578958,	57577581	57577695	57577664	57577664	Frame_Shift_Del	A	-	p.E840fs
STAD	TCGA-BR-8284-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831119	58831119	Frame_Shift_Del	T	-	p.I771fs
STAD	TCGA-BR-8284-01	FLOT2	ENST00000580805.1,ENST00000580313.1	chr17	27210194:27210249:27211242:27211333:27212629:27212703,27210194:27210249:27211242:27211333:27215962:27216044,27210194:27210249:27211242:27211333:27212874:27212965,	27211243	27211333	27211272	27211272	Frame_Shift_Del	C	-	p.V65fs
STAD	TCGA-BR-8284-01	XYLT2	ENST00000017003.2	chr17	48433871:48434134:48434417:48434613:48435567:48435678,	48434418	48434613	48434434	48434435	Frame_Shift_Ins	-	T	p.G587fs
STAD	TCGA-BR-8286-01	PDE2A	ENST00000543750.1,ENST00000334456.5,ENST00000540345.1,ENST00000539367.1,ENST00000444035.2,ENST00000544570.1,ENST00000538749.1	chr11	72302392:72302400:72307636:72307692:72308553:72308663,	72307637	72307692	72307657	72307658	Frame_Shift_Ins	-	C	p.A157fs
STAD	TCGA-BR-8289-01	PRKAB1	ENST00000541640.1	chr12	120106040:120106208:120110105:120110269:120111768:120111862,	120110106	120110269	120110201	120110202	Frame_Shift_Ins	-	G	p.T85fs
STAD	TCGA-BR-8295-01	KDELR3	ENST00000216014.4,ENST00000471268.1	chr22	38875597:38875756:38877216:38877469:38878500:38878927,	38877217	38877469	38877230	38877233	Frame_Shift_Del	TCTC	-	p.F122fs
STAD	TCGA-BR-8297-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121040	95121041	Frame_Shift_Ins	-	A	p.F185fs
STAD	TCGA-BR-8360-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762332	36762333	Frame_Shift_Ins	-	A	p.E755fs
STAD	TCGA-BR-8360-01	FHL3	ENST00000477194.1	chr1	38464645:38464820:38464928:38465104:38471028:38471174,38464645:38464820:38464928:38465104:38471110:38471278,	38464929	38465104	38465063	38465064	Frame_Shift_Del	CA	-	p.A8fs
STAD	TCGA-BR-8360-01	IVNS1ABP	ENST00000392007.3,ENST00000367498.3,ENST00000459929.1	chr1	185276620:185276794:185277931:185278007:185278134:185278304,	185277932	185278007	185277957	185277958	Frame_Shift_Ins	-	T	p.K111fs
STAD	TCGA-BR-8360-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389837	11389838	Frame_Shift_Ins	-	A	p.W138fs
STAD	TCGA-BR-8360-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099958	168099958	Frame_Shift_Del	G	-	p.T685fs
STAD	TCGA-BR-8360-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103737	168103738	Frame_Shift_Ins	-	A	p.I1945fs
STAD	TCGA-BR-8360-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6	chr4	87690921:87691136:87691253:87691352:87692323:87692688,	87691254	87691352	87691300	87691301	Frame_Shift_Del	TT	-	p.L1584fs
STAD	TCGA-BR-8360-01	INTS12	ENST00000451321.2	chr4	106616718:106616825:106621006:106621171:106629794:106629816,	106621007	106621171	106621122	106621122	Frame_Shift_Del	A	-	p.L14fs
STAD	TCGA-BR-8360-01	TMEM171	ENST00000454765.2	chr5	72419692:72419840:72424216:72424358:72427367:72427636,72419132:72419840:72424216:72424358:72427364:72427644,	72424217	72424358	72424240	72424240	Frame_Shift_Del	C	-	p.P221fs
STAD	TCGA-BR-8360-01	RBM28	ENST00000223073.2,ENST00000487602.1,ENST00000415472.2	chr7	127970871:127970981:127973343:127973416:127975596:127975733,	127973344	127973416	127973349	127973350	Frame_Shift_Ins	-	A	p.F338fs
STAD	TCGA-BR-8360-01	DNAJB13	ENST00000339764.1	chr11	73670538:73670700:73675922:73676080:73677182:73677296,	73675923	73676080	73676057	73676058	Frame_Shift_Ins	-	A	p.T156fs
STAD	TCGA-BR-8360-01	CUL5	ENST00000531427.1,ENST00000393094.2	chr11	107904527:107904637:107916996:107917096:107920616:107920793,	107916997	107917096	107917013	107917014	Frame_Shift_Ins	-	A	p.V50fs
STAD	TCGA-BR-8360-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31604973	31604974	Frame_Shift_Ins	-	A	p.F545fs
STAD	TCGA-BR-8360-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
STAD	TCGA-BR-8360-01	PGF	ENST00000555567.1,ENST00000238607.6	chr14	75409412:75409436:75412915:75412978:75413081:75413111,	75412916	75412978	75412941	75412942	Frame_Shift_Del	TC	-	p.K154fs
STAD	TCGA-BR-8360-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878534	89878534	Frame_Shift_Del	G	-	p.P96fs
STAD	TCGA-BR-8360-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-BR-8360-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-BR-8360-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289855	68289855	Frame_Shift_Del	G	-	p.W230fs
STAD	TCGA-BR-8360-01	NKIRAS2	ENST00000491638.1	chr17	40173581:40173689:40174393:40174658:40175671:40175859,	40174394	40174658	40174601	40174602	Frame_Shift_Del	TT	-	p.S93fs
STAD	TCGA-BR-8360-01	NKIRAS2	ENST00000479407.1	chr17	40174416:40174490:40174587:40174658:40175671:40175859,	40174588	40174658	40174601	40174602	Frame_Shift_Del	TT	-	p.S93fs
STAD	TCGA-BR-8360-01	NKIRAS2	ENST00000393880.1,ENST00000393881.3,ENST00000393885.4,ENST00000307641.5	chr17	40173581:40173689:40174416:40174658:40175671:40175859,	40174417	40174658	40174601	40174602	Frame_Shift_Del	TT	-	p.S93fs
STAD	TCGA-BR-8360-01	NKIRAS2	ENST00000485789.1	chr17	40174416:40174490:40174582:40174658:40175671:40175859,	40174583	40174658	40174601	40174602	Frame_Shift_Del	TT	-	p.S93fs
STAD	TCGA-BR-8360-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107038	49107038	Frame_Shift_Del	G	-	p.Q297fs
STAD	TCGA-BR-8360-01	MAMSTR	ENST00000356751.4,ENST00000419611.1,ENST00000318083.6	chr19	49217116:49217302:49218062:49218165:49218518:49218703,49217622:49217817:49218062:49218165:49218518:49218703,	49218063	49218165	49218106	49218107	Frame_Shift_Ins	-	G	p.P162fs
STAD	TCGA-BR-8360-01	EDN3	ENST00000371028.2,ENST00000337938.2	chr20	57896075:57896248:57897426:57897472:57899385:57899529,	57897427	57897472	57897444	57897445	Frame_Shift_Ins	-	A	p.E187fs
STAD	TCGA-BR-8360-01	EDN3	ENST00000311585.7	chr20	57896075:57896248:57897426:57897507:57899385:57899529,	57897427	57897507	57897444	57897445	Frame_Shift_Ins	-	A	p.E187fs
STAD	TCGA-BR-8361-01	NTNG1	ENST00000370074.4	chr1	107937775:107937948:107950303:107950330:108023232:108023462,	107950304	107950330	107950325	107950326	Frame_Shift_Ins	-	T	p.I361fs
STAD	TCGA-BR-8361-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197071073	197071074	Frame_Shift_Ins	-	A	p.F2436fs
STAD	TCGA-BR-8361-01	LAX1	ENST00000442561.2,ENST00000367217.5,ENST00000367215.1	chr1	203740494:203740605:203741195:203741275:203743002:203743850,	203741196	203741275	203741258	203741259	Frame_Shift_Ins	-	GAGAGCCC	p.S124fs
STAD	TCGA-BR-8361-01	KIF5C	ENST00000464066.1,ENST00000414838.2,ENST00000435030.1,ENST00000397413.1,ENST00000482151.1	chr2	149857235:149857296:149861906:149861978:149864476:149864581,	149861907	149861978	149861973	149861974	Frame_Shift_Ins	-	A	p.V813fs
STAD	TCGA-BR-8361-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196544942	196544943	Frame_Shift_Ins	-	A	p.E59fs
STAD	TCGA-BR-8361-01	ATRIP	ENST00000346691.4,ENST00000454733.1,ENST00000320211.3,ENST00000357105.6,ENST00000424906.1,ENST00000412052.1	chr3	48500761:48500853:48501185:48501315:48501508:48501561,	48501186	48501315	48501288	48501288	Frame_Shift_Del	C	-	p.T343fs
STAD	TCGA-BR-8361-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986251	2986252	Frame_Shift_Ins	-	A	p.G21fs
STAD	TCGA-BR-8361-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402940	52402940	Frame_Shift_Del	G	-	p.P22fs
STAD	TCGA-BR-8361-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137754641:137754921:137756394:137756651:137759763:137760030,	137756395	137756651	137756625	137756625	Frame_Shift_Del	C	-	p.F1315fs
STAD	TCGA-BR-8361-01	NEU1	ENST00000375631.4,ENST00000480384.1,ENST00000491768.1	chr6	31828215:31828398:31828964:31829227:31829775:31829968,	31828965	31829227	31829119	31829120	Frame_Shift_Ins	-	A	p.F154fs
STAD	TCGA-BR-8361-01	RPL10A	ENST00000490335.1,ENST00000322203.6,ENST00000478340.1,ENST00000467020.1,ENST00000464112.1	chr6	35437212:35437306:35437955:35438128:35438356:35438417,	35437956	35438128	35438059	35438060	Frame_Shift_Del	CA	-	p.L138fs
STAD	TCGA-BR-8361-01	ZNF451	ENST00000491832.2,ENST00000370706.4	chr6	57011887:57013491:57015516:57015660:57017018:57017149,	57015517	57015660	57015649	57015650	Frame_Shift_Ins	-	G	p.W914fs
STAD	TCGA-BR-8361-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405969	157405970	Frame_Shift_Del	CT	-	p.P724fs
STAD	TCGA-BR-8361-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508009	158508010	Frame_Shift_Ins	-	C	p.R1110fs
STAD	TCGA-BR-8361-01	ADAMTSL1	ENST00000276935.6,ENST00000380548.4,ENST00000327883.7	chr9	18675854:18675905:18680309:18680514:18681809:18681957,	18680310	18680514	18680350	18680351	Frame_Shift_Ins	-	G	p.C392fs
STAD	TCGA-BR-8361-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547974	35547974	Frame_Shift_Del	C	-	p.S485fs
STAD	TCGA-BR-8361-01	APBA1	ENST00000265381.4	chr9	72064499:72064712:72067037:72067217:72071162:72071348,	72067038	72067217	72067044	72067045	Frame_Shift_Del	AC	-	p.C654fs
STAD	TCGA-BR-8361-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696453	Frame_Shift_Del	GG	-	p.P1005fs
STAD	TCGA-BR-8361-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
STAD	TCGA-BR-8361-01	SLC22A10	ENST00000332793.6	chr11	63066985:63067101:63069800:63070015:63071579:63071688,	63069801	63070015	63070012	63070013	Frame_Shift_Ins	-	A	p.P427fs
STAD	TCGA-BR-8361-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77411876	77411876	Frame_Shift_Del	T	-	p.R800fs
STAD	TCGA-BR-8361-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044069	108044070	Frame_Shift_Ins	-	T	p.S548fs
STAD	TCGA-BR-8361-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449692	85449692	Frame_Shift_Del	A	-	p.E374fs
STAD	TCGA-BR-8361-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641029	96641030	Frame_Shift_Ins	-	C	p.S173fs
STAD	TCGA-BR-8361-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542718	114542718	Frame_Shift_Del	C	-	p.G150fs
STAD	TCGA-BR-8361-01	FERMT2	ENST00000395631.2,ENST00000341590.3,ENST00000554712.1,ENST00000399304.3,ENST00000343279.4,ENST00000553373.1	chr14	53360093:53360145:53385840:53386074:53417129:53417286,	53385841	53386074	53386064	53386065	Frame_Shift_Ins	-	T	p.K56fs
STAD	TCGA-BR-8361-01	SIPA1L1	ENST00000358550.2,ENST00000555818.1,ENST00000537413.1,ENST00000381232.3	chr14	72152078:72152348:72165697:72165844:72169097:72169222,	72165698	72165844	72165809	72165810	Frame_Shift_Ins	-	G	p.V1162fs
STAD	TCGA-BR-8361-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021442	42021442	Frame_Shift_Del	A	-	p.R1246fs
STAD	TCGA-BR-8361-01	SPG11	ENST00000558319.1,ENST00000427534.2,ENST00000535302.2,ENST00000261866.7	chr15	44903037:44903183:44905627:44905734:44907560:44907764,	44905628	44905734	44905698	44905699	Frame_Shift_Ins	-	T	p.K1025fs
STAD	TCGA-BR-8361-01	SH3GL3	ENST00000427482.2,ENST00000324537.5,ENST00000563901.1,ENST00000535412.1,ENST00000434347.1	chr15	84237287:84237424:84241316:84241450:84245334:84245493,	84241317	84241450	84241367	84241368	Frame_Shift_Ins	-	A	p.V127fs
STAD	TCGA-BR-8361-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736372	Frame_Shift_Ins	-	C	p.Q1875fs
STAD	TCGA-BR-8361-01	FANCA	ENST00000389301.3,ENST00000568369.1	chr16	89828356:89828430:89831297:89831474:89833548:89833555,	89831298	89831474	89831345	89831346	Frame_Shift_Del	AG	-	p.W911fs
STAD	TCGA-BR-8361-01	RHOT1	ENST00000394692.2,ENST00000358365.3,ENST00000333942.6,ENST00000581031.1,ENST00000578205.1,ENST00000583994.1,ENST00000581094.1,ENST00000545287.2,ENST00000354266.3	chr17	30527974:30528075:30529788:30529919:30530908:30530992,	30529789	30529919	30529800	30529801	Frame_Shift_Ins	-	A	p.D404fs
STAD	TCGA-BR-8361-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827882	48827883	Frame_Shift_Ins	-	A	p.D386fs
STAD	TCGA-BR-8361-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9254819	9254820	Frame_Shift_Ins	-	G	p.E518fs
STAD	TCGA-BR-8361-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431521	36431522	Frame_Shift_Ins	-	C	p.D398fs
STAD	TCGA-BR-8361-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-BR-8361-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-BR-8361-01	TMX4	ENST00000527925.1,ENST00000246024.2	chr20	7964440:7964504:7967934:7968036:7976672:7976718,	7967935	7968036	7967944	7967944	Frame_Shift_Del	A	-	p.M203fs
STAD	TCGA-BR-8363-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226332	21226332	Frame_Shift_Del	T	-	p.V564fs
STAD	TCGA-BR-8363-01	YTHDF2	ENST00000542507.1,ENST00000478283.1,ENST00000541996.1,ENST00000373812.3	chr1	29064770:29064850:29068914:29070498:29095440:29095637,	29068915	29070498	29069013	29069013	Frame_Shift_Del	G	-	p.T77fs
STAD	TCGA-BR-8363-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812017	59812018	Frame_Shift_Ins	-	G	p.V137fs
STAD	TCGA-BR-8363-01	ATP6V1C2	ENST00000272238.4,ENST00000381661.3	chr2	10894106:10894192:10904456:10904551:10908844:10908936,	10904457	10904551	10904471	10904472	Frame_Shift_Ins	-	T	p.S99fs
STAD	TCGA-BR-8363-01	CCDC88A	ENST00000426576.1,ENST00000436346.1,ENST00000413716.2,ENST00000336838.6,ENST00000456975.1,ENST00000412148.1,ENST00000263630.8	chr2	55543063:55543250:55544341:55544485:55544699:55544889,	55544342	55544485	55544436	55544436	Frame_Shift_Del	T	-	p.M1217fs
STAD	TCGA-BR-8363-01	VILL	ENST00000383759.2,ENST00000484717.1,ENST00000283713.6	chr3	38038973:38039176:38039580:38039659:38039756:38039855,	38039581	38039659	38039625	38039626	Frame_Shift_Ins	-	C	p.T270fs
STAD	TCGA-BR-8363-01	PARP14	ENST00000474629.2,ENST00000460683.1	chr3	122414272:122414509:122418236:122420482:122422588:122422825,	122418237	122420482	122418640	122418640	Frame_Shift_Del	A	-	p.I413fs
STAD	TCGA-BR-8363-01	LIPH	ENST00000424591.2,ENST00000296252.4	chr3	185234854:185234950:185236929:185237097:185241858:185241948,	185236930	185237097	185237031	185237032	Frame_Shift_Del	CT	-	p.S262fs
STAD	TCGA-BR-8363-01	PPWD1	ENST00000535264.1,ENST00000511908.1,ENST00000538977.1,ENST00000510930.1,ENST00000507608.1,ENST00000261308.5	chr5	64865704:64865825:64867665:64868113:64872705:64872753,	64867666	64868113	64867925	64867926	Frame_Shift_Ins	-	A	p.P260fs
STAD	TCGA-BR-8363-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788024	Frame_Shift_Ins	-	T	p.K1115fs
STAD	TCGA-BR-8363-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485489	Frame_Shift_Ins	-	G	p.T1314fs
STAD	TCGA-BR-8363-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
STAD	TCGA-BR-8363-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855928	Frame_Shift_Ins	-	G	p.R297fs
STAD	TCGA-BR-8363-01	TAF2	ENST00000378164.2	chr8	120814033:120814265:120816117:120816259:120818522:120818641,	120816118	120816259	120816158	120816159	Frame_Shift_Del	CT	-	p.G174fs
STAD	TCGA-BR-8363-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962452	21962452	Frame_Shift_Del	G	-	p.E408fs
STAD	TCGA-BR-8363-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500145	10500145	Frame_Shift_Del	C	-	p.G107fs
STAD	TCGA-BR-8363-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499816	42499817	Frame_Shift_Ins	-	A	p.L223fs
STAD	TCGA-BR-8363-01	ESRP2	ENST00000251366.3,ENST00000566774.1,ENST00000473183.2,ENST00000565858.1	chr16	68264112:68264218:68264291:68264457:68264743:68264930,	68264292	68264457	68264442	68264442	Frame_Shift_Del	G	-	p.T649fs
STAD	TCGA-BR-8363-01	PIAS2	ENST00000545673.1	chr18	44435527:44435578:44444126:44444211:44470542:44471017,44435527:44435578:44444126:44444211:44497284:44497308,	44444127	44444211	44444174	44444175	Frame_Shift_Ins	-	A	p.F179fs
STAD	TCGA-BR-8363-01	BIRC7	ENST00000217169.3	chr20	61867234:61867797:61869254:61869354:61869747:61869829,	61869255	61869354	61869290	61869290	Frame_Shift_Del	G	-	p.Y128fs
STAD	TCGA-BR-8368-01	MEAF6	ENST00000373074.1,ENST00000296214.5	chr1	37959534:37959708:37961485:37961519:37967404:37967597,	37961486	37961519	37961495	37961496	Frame_Shift_Ins	-	T	p.K196fs
STAD	TCGA-BR-8368-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-BR-8368-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694023	156694024	Frame_Shift_Ins	-	G	p.L289fs
STAD	TCGA-BR-8368-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232795	99232795	Frame_Shift_Del	T	-	p.L193fs
STAD	TCGA-BR-8368-01	TMEM87B	ENST00000283206.4	chr2	112838633:112838695:112838911:112839095:112843581:112843681,	112838912	112839095	112839024	112839024	Frame_Shift_Del	T	-	p.I256fs
STAD	TCGA-BR-8368-01	DCAF17	ENST00000539783.1	chr2	172333369:172333460:172334496:172334580:172336547:172336703,172325486:172325540:172334496:172334580:172336547:172336703,	172334497	172334580	172334538	172334538	Frame_Shift_Del	A	-	p.V408fs
STAD	TCGA-BR-8368-01	PER2	ENST00000254658.3,ENST00000254657.3	chr2	239152678:239155165:239157702:239157853:239159191:239159384,	239157703	239157853	239157776	239157777	Frame_Shift_Del	CT	-	p.S1182fs
STAD	TCGA-BR-8368-01	LAMB2	ENST00000418109.1,ENST00000305544.4	chr3	49159595:49159803:49160136:49160485:49160564:49160806,	49160137	49160485	49160436	49160436	Frame_Shift_Del	C	-	p.G1425fs
STAD	TCGA-BR-8368-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-BR-8368-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855927	Frame_Shift_Del	G	-	p.R297fs
STAD	TCGA-BR-8368-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128856	68128857	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-BR-8368-01	GLIPR2	ENST00000377959.1,ENST00000377960.4	chr9	36136741:36136788:36147782:36147891:36148543:36148647,	36147783	36147891	36147847	36147848	Frame_Shift_Ins	-	C	p.V26fs
STAD	TCGA-BR-8368-01	RALGDS	ENST00000372062.3,ENST00000498797.1,ENST00000393160.3,ENST00000372047.3,ENST00000372050.3,ENST00000542690.1,ENST00000393157.3	chr9	135974024:135974149:135975654:135975769:135976906:135976969,	135975655	135975769	135975666	135975667	Frame_Shift_Del	GA	-	p.S853fs
STAD	TCGA-BR-8368-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-BR-8368-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1863fs
STAD	TCGA-BR-8368-01	MAPK8	ENST00000432379.1,ENST00000374176.4,ENST00000374174.1,ENST00000395611.3,ENST00000374182.3,ENST00000476134.1,ENST00000360332.3,ENST00000374179.3,ENST00000374189.1,ENST00000426557.1	chr10	49609654:49609825:49612894:49613024:49617921:49617980,	49612895	49613024	49613019	49613020	Frame_Shift_Ins	-	A	p.H82fs
STAD	TCGA-BR-8368-01	SYTL2	ENST00000316356.4	chr11	85459314:85459466:85468667:85469157:85521996:85522172,	85468668	85469157	85468672	85468673	Frame_Shift_Del	CT	-	p.V33fs
STAD	TCGA-BR-8368-01	USP2	ENST00000260187.2	chr11	119230893:119230944:119243416:119244231:119252182:119252421,	119243417	119244231	119243862	119243862	Frame_Shift_Del	C	-	p.G110fs
STAD	TCGA-BR-8368-01	LRRK2	ENST00000416796.1,ENST00000298910.7,ENST00000343742.2	chr12	40653281:40653406:40657590:40657703:40668384:40668529,	40657591	40657703	40657647	40657648	Frame_Shift_Ins	-	A	p.V533fs
STAD	TCGA-BR-8368-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967247	64967248	Frame_Shift_Ins	-	A	p.D731fs
STAD	TCGA-BR-8368-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270150	66270150	Frame_Shift_Del	C	-	p.L99fs
STAD	TCGA-BR-8368-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000597793.1,ENST00000598325.1,ENST00000601093.1	chr19	50363350:50363440:50363524:50363593:50363870:50363982,	50363525	50363593	50363527	50363528	Frame_Shift_Ins	-	G	p.M414fs
STAD	TCGA-BR-8368-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371752.1	chr20	47871031:47871186:47872344:47872484:47873953:47874201,	47872345	47872484	47872465	47872466	Frame_Shift_Ins	-	T	p.K895fs
STAD	TCGA-BR-8368-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000467026.1,ENST00000486937.1,ENST00000291688.1	chr21	47660724:47660931:47662715:47662845:47663378:47663636,	47662716	47662845	47662805	47662806	Frame_Shift_Ins	-	A	p.F1779fs
STAD	TCGA-BR-8368-01	ARAF	ENST00000377045.4	chrX	47424650:47424749:47426037:47426179:47426282:47426310,	47426038	47426179	47426094	47426094	Frame_Shift_Del	C	-	p.A205fs
STAD	TCGA-BR-8370-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593406	48593407	Frame_Shift_Ins	-	GT	p.G386fs
STAD	TCGA-BR-8372-01	NASP	ENST00000402363.3,ENST00000350030.3,ENST00000537798.1,ENST00000453748.1	chr1	46072188:46072263:46072992:46074009:46078840:46078920,	46072993	46074009	46073055	46073055	Frame_Shift_Del	A	-	p.A157fs
STAD	TCGA-BR-8372-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823172	155823172	Frame_Shift_Del	T	-	p.M134fs
STAD	TCGA-BR-8372-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370840	240370840	Frame_Shift_Del	C	-	p.P913fs
STAD	TCGA-BR-8372-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977650	99977651	Frame_Shift_Ins	-	A	p.D95fs
STAD	TCGA-BR-8372-01	TMEM87B	ENST00000283206.4	chr2	112838633:112838695:112838911:112839095:112843581:112843681,	112838912	112839095	112839024	112839024	Frame_Shift_Del	T	-	p.I256fs
STAD	TCGA-BR-8372-01	ANKMY1	ENST00000401804.1,ENST00000272972.3,ENST00000391987.1	chr2	241465220:241465266:241468453:241468926:241492330:241492474,241465220:241465266:241468453:241468926:241500147:241500185,241465653:241465862:241468453:241468926:241492330:241492474,	241468454	241468926	241468685	241468685	Frame_Shift_Del	A	-	p.F241fs
STAD	TCGA-BR-8372-01	ATRIP	ENST00000346691.4,ENST00000454733.1,ENST00000320211.3,ENST00000357105.6,ENST00000424906.1,ENST00000412052.1	chr3	48500761:48500853:48501185:48501315:48501508:48501561,	48501186	48501315	48501288	48501288	Frame_Shift_Del	C	-	p.T343fs
STAD	TCGA-BR-8372-01	EEFSEC	ENST00000254730.6	chr3	127983459:127983624:128060075:128060732:128077059:128077216,	128060076	128060732	128060203	128060204	Frame_Shift_Ins	-	C	p.A305fs
STAD	TCGA-BR-8372-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998165	169998166	Frame_Shift_Ins	-	A	p.V285fs
STAD	TCGA-BR-8372-01	KIAA1109	ENST00000264501.4,ENST00000455637.1,ENST00000446180.1,ENST00000388738.3	chr4	123164152:123164223:123165008:123165182:123166174:123166295,	123165009	123165182	123165029	123165030	Frame_Shift_Ins	-	A	p.E1588fs
STAD	TCGA-BR-8372-01	STOX2	ENST00000308497.4	chr4	184922477:184922630:184930310:184932576:184938241:184938531,	184930311	184932576	184930544	184930545	Frame_Shift_Del	TG	-	p.G184fs
STAD	TCGA-BR-8372-01	SORBS2	ENST00000355634.5,ENST00000418609.1,ENST00000431808.1,ENST00000284776.7	chr4	186541216:186541305:186544067:186545648:186547985:186548063,	186544068	186545648	186544439	186544439	Frame_Shift_Del	T	-	p.N825fs
STAD	TCGA-BR-8372-01	VCAN	ENST00000265077.3,ENST00000513016.1,ENST00000502527.2,ENST00000343200.5,ENST00000512590.2,ENST00000342785.4	chr5	82868234:82868379:82875798:82875981:82876125:82876267,	82875799	82875981	82875813	82875813	Frame_Shift_Del	C	-	p.Q3298fs
STAD	TCGA-BR-8372-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137754641:137754921:137756394:137756651:137759763:137760030,	137756395	137756651	137756625	137756625	Frame_Shift_Del	C	-	p.F1315fs
STAD	TCGA-BR-8372-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923753	158923754	Frame_Shift_Ins	-	G	p.P1019fs
STAD	TCGA-BR-8372-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975473	13975473	Frame_Shift_Del	G	-	p.T139fs
STAD	TCGA-BR-8372-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167474	Frame_Shift_Ins	-	A	p.L72fs
STAD	TCGA-BR-8372-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128856	68128857	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-BR-8372-01	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103273373:103273487:103274142:103274298:103276701:103276786,	103274143	103274298	103274272	103274272	Frame_Shift_Del	A	-	p.D2572fs
STAD	TCGA-BR-8372-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1863fs
STAD	TCGA-BR-8372-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310573	103310574	Frame_Shift_Ins	-	C	p.E591fs
STAD	TCGA-BR-8372-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500145	10500145	Frame_Shift_Del	C	-	p.G107fs
STAD	TCGA-BR-8372-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
STAD	TCGA-BR-8372-01	GALNT6	ENST00000543196.2,ENST00000603641.1,ENST00000356317.3	chr12	51759213:51759363:51770978:51771151:51773074:51773565,	51770979	51771151	51771119	51771119	Frame_Shift_Del	G	-	p.P175fs
STAD	TCGA-BR-8372-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450035	85450036	Frame_Shift_Ins	-	A	p.A488fs
STAD	TCGA-BR-8372-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
STAD	TCGA-BR-8372-01	RASAL1	ENST00000548972.1,ENST00000446861.3,ENST00000261729.5,ENST00000546530.1,ENST00000548055.1,ENST00000546727.1,ENST00000418411.2	chr12	113565616:113565678:113565869:113565983:113568689:113568746,	113565870	113565983	113565943	113565943	Frame_Shift_Del	C	-	p.E55fs
STAD	TCGA-BR-8372-01	STRN3	ENST00000357479.5	chr14	31382729:31382863:31398406:31398517:31404368:31404506,31388171:31388312:31398406:31398517:31404368:31404506,	31398407	31398517	31398423	31398424	Frame_Shift_Ins	-	C	p.G361fs
STAD	TCGA-BR-8372-01	BTBD7	ENST00000554565.1,ENST00000355125.3,ENST00000553975.1,ENST00000393170.2,ENST00000334746.5	chr14	93717808:93717998:93719992:93720136:93723540:93723701,	93719993	93720136	93720048	93720049	Frame_Shift_Ins	-	T	p.N566fs
STAD	TCGA-BR-8372-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-8372-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-8372-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-BR-8372-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645340	Frame_Shift_Ins	-	A	p.A201fs
STAD	TCGA-BR-8372-01	TOM1L1	ENST00000540336.1,ENST00000571319.1	chr17	52978237:52978284:52990026:52990176:52991108:52991207,52982849:52982928:52990026:52990176:52991108:52991207,52981073:52981153:52990026:52990176:52991108:52991207,	52990027	52990176	52990096	52990097	Frame_Shift_Del	AA	-	p.V97fs
STAD	TCGA-BR-8372-01	TOM1L1	ENST00000572158.1	chr17	52982849:52982928:52990047:52990176:52991108:52991207,	52990048	52990176	52990096	52990097	Frame_Shift_Del	AA	-	p.V97fs
STAD	TCGA-BR-8372-01	CARM1	ENST00000586221.1,ENST00000344150.4,ENST00000590699.1,ENST00000589693.1,ENST00000590039.1	chr19	10982585:10982598:11015626:11015752:11018714:11018821,	11015627	11015752	11015634	11015635	Frame_Shift_Ins	-	TG	p.D76fs
STAD	TCGA-BR-8372-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562741	14562741	Frame_Shift_Del	C	-	p.R357fs
STAD	TCGA-BR-8372-01	DMKN	ENST00000402589.2,ENST00000498211.1,ENST00000467637.1,ENST00000419602.1,ENST00000480502.1,ENST00000601650.1,ENST00000462126.1,ENST00000464709.2,ENST00000408915.2,ENST00000483855.1,ENST00000414866.2,ENST00000602781.1,ENST00000429837.1,ENST00000462721.1,ENST00000436012.1,ENST00000493979.1,ENST00000460327.1,ENST00000339686.3,ENST00000597212.1,ENST00000490622.1,ENST00000467532.1,ENST00000469960.1,ENST00000460051.1,ENST00000492341.2,ENST00000463292.1,ENST00000488762.1,ENST00000434389.1,ENST00000488542.2,ENST00000443640.1,ENST00000472252.2	chr19	35989621:35989665:35989775:35989799:35990859:35990931,	35989776	35989799	35989795	35989796	Frame_Shift_Ins	-	C	p.G455fs
STAD	TCGA-BR-8372-01	ACSS2	ENST00000468550.2	chr20	33501555:33501628:33501898:33501920:33502125:33502240,	33501899	33501920	33501911	33501912	Frame_Shift_Ins	-	G	p.R219fs
STAD	TCGA-BR-8372-01	ACSS2	ENST00000253382.5,ENST00000336325.4,ENST00000360596.2,ENST00000481284.1	chr20	33501555:33501628:33501898:33501974:33502125:33502240,	33501899	33501974	33501911	33501912	Frame_Shift_Ins	-	G	p.R219fs
STAD	TCGA-BR-8372-01	TPST2	ENST00000398110.2,ENST00000403880.1,ENST00000338754.4	chr22	26928660:26928711:26932253:26932452:26936754:26936837,	26932254	26932452	26932299	26932299	Frame_Shift_Del	G	-	p.N333fs
STAD	TCGA-BR-8373-01	SLCO2B1	ENST00000428359.2,ENST00000525650.1,ENST00000532236.1,ENST00000289575.5	chr11	74880217:74880451:74880710:74880809:74883423:74883614,	74880711	74880809	74880733	74880748	Frame_Shift_Del	GATGGGGCCAGGCCTG	-	p.M235fs
STAD	TCGA-BR-8382-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097751	27097751	Frame_Shift_Del	C	-	p.P1113fs
STAD	TCGA-BR-8382-01	TPO	ENST00000497517.2	chr2	1500366:1500537:1507719:1507851:1520654:1520751,1497573:1497811:1507719:1507851:1520654:1520751,	1507720	1507851	1507748	1507748	Frame_Shift_Del	C	-	p.H805fs
STAD	TCGA-BR-8382-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087884	109087884	Frame_Shift_Del	A	-	p.E700fs
STAD	TCGA-BR-8382-01	CDYL	ENST00000397588.3	chr6	4776675:4777041:4891946:4892613:4935748:4936005,	4891947	4892613	4892244	4892244	Frame_Shift_Del	A	-	p.S161fs
STAD	TCGA-BR-8382-01	HIVEP1	ENST00000487103.1,ENST00000478545.1,ENST00000379388.2,ENST00000491710.1	chr6	12015819:12015901:12089416:12089470:12120122:12120167,	12089417	12089470	12089463	12089464	Frame_Shift_Ins	-	A	p.S29fs
STAD	TCGA-BR-8382-01	ENPP3	ENST00000414305.1,ENST00000357639.3	chr6	132047185:132047340:132054727:132054863:132058494:132058572,	132054728	132054863	132054763	132054766	Frame_Shift_Del	CTGT	-	p.D663fs
STAD	TCGA-BR-8382-01	CPA5	ENST00000495736.1	chr7	130003281:130003350:130007212:130007831:130008250:130008438,	130007213	130007831	130007805	130007806	Frame_Shift_Ins	-	T	p.I366fs
STAD	TCGA-BR-8382-01	CPA5	ENST00000485477.1,ENST00000393213.3,ENST00000461828.1,ENST00000474905.1,ENST00000466363.2,ENST00000355388.3	chr7	130007212:130007412:130007746:130007831:130008250:130008438,	130007747	130007831	130007805	130007806	Frame_Shift_Ins	-	T	p.I366fs
STAD	TCGA-BR-8382-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112461	36112462	Frame_Shift_Ins	-	A	p.Q683fs
STAD	TCGA-BR-8382-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722672:722805:723240:723353:724723:724829,	723241	723353	723305	723306	Frame_Shift_Ins	-	C	p.T469fs
STAD	TCGA-BR-8382-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499816	42499817	Frame_Shift_Ins	-	A	p.L223fs
STAD	TCGA-BR-8382-01	MCTP2	ENST00000557742.1	chr15	94899365:94899530:94901775:94901841:94910833:94911020,	94901776	94901841	94901802	94901803	Frame_Shift_Ins	-	G	p.W421fs
STAD	TCGA-BR-8382-01	MCTP2	ENST00000456504.1,ENST00000451018.3,ENST00000331706.4,ENST00000357742.4	chr15	94899365:94899530:94901710:94901841:94910833:94911020,	94901711	94901841	94901802	94901803	Frame_Shift_Ins	-	G	p.W421fs
STAD	TCGA-BR-8382-01	PTTG1IP	ENST00000330938.3,ENST00000397886.3	chr21	46271321:46271542:46275124:46275171:46276107:46276191,	46275125	46275171	46275129	46275129	Frame_Shift_Del	T	-	p.Y165fs
STAD	TCGA-BR-8483-01	TMEM39A	ENST00000319172.5	chr3	119156780:119156950:119165864:119166019:119171293:119171377,	119165865	119166019	119165886	119165887	Frame_Shift_Ins	-	T	p.N185fs
STAD	TCGA-BR-8483-01	ATMIN	ENST00000564241.1,ENST00000566488.1,ENST00000299575.4	chr16	81074960:81075086:81075885:81076085:81076765:81078779,	81075886	81076085	81075923	81075926	Frame_Shift_Del	GTAG	-	p.C167fs
STAD	TCGA-BR-8483-01	TRIM37	ENST00000262294.7,ENST00000376149.3,ENST00000393065.2,ENST00000577554.1,ENST00000393066.3	chr17	57105775:57106084:57109256:57109451:57119173:57119259,	57109257	57109451	57109355	57109364	Frame_Shift_Del	AATGGATCAA	-	p.I614fs
STAD	TCGA-BR-8486-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579396	7579397	Frame_Shift_Ins	-	C	p.V97fs
STAD	TCGA-BR-8487-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799060	39799061	Frame_Shift_Ins	-	G	p.R707fs
STAD	TCGA-BR-8487-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42046124	42046125	Frame_Shift_Ins	-	T	p.R1449fs
STAD	TCGA-BR-8487-01	SHC1	ENST00000368453.4,ENST00000448116.2	chr1	154938018:154938257:154938421:154938556:154938637:154938707,	154938422	154938556	154938468	154938468	Frame_Shift_Del	G	-	p.N447fs
STAD	TCGA-BR-8487-01	SHC1	ENST00000368445.5,ENST00000444664.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938018:154938257:154938421:154938553:154938637:154938707,	154938422	154938553	154938468	154938468	Frame_Shift_Del	G	-	p.N447fs
STAD	TCGA-BR-8487-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134660	161134660	Frame_Shift_Del	A	-	p.I473fs
STAD	TCGA-BR-8487-01	MGST3	ENST00000367885.1,ENST00000367884.2,ENST00000367886.2,ENST00000367889.3,ENST00000495447.1,ENST00000367888.4,ENST00000367883.1	chr1	165620267:165620324:165621214:165621272:165623515:165623588,	165621215	165621272	165621240	165621241	Frame_Shift_Ins	-	T	p.L72fs
STAD	TCGA-BR-8487-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128443	202128443	Frame_Shift_Del	T	-	p.T30fs
STAD	TCGA-BR-8487-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128443	202128443	Frame_Shift_Del	T	-	p.T30fs
STAD	TCGA-BR-8487-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128443	202128443	Frame_Shift_Del	T	-	p.T30fs
STAD	TCGA-BR-8487-01	PTPN7	ENST00000476061.1	chr1	202127245:202127429:202128408:202128469:202129672:202129722,	202128409	202128469	202128443	202128443	Frame_Shift_Del	T	-	p.T30fs
STAD	TCGA-BR-8487-01	RAB3GAP2	ENST00000358951.2	chr1	220368639:220368719:220369591:220369740:220375617:220375716,	220369592	220369740	220369665	220369666	Frame_Shift_Ins	-	T	p.N296fs
STAD	TCGA-BR-8487-01	INO80B	ENST00000409917.1,ENST00000452361.1,ENST00000441673.1,ENST00000431187.1	chr2	74682243:74682301:74682532:74682725:74682944:74683063,	74682533	74682725	74682586	74682587	Frame_Shift_Ins	-	A	p.K55fs
STAD	TCGA-BR-8487-01	INO80B	ENST00000409493.2	chr2	74682243:74682301:74682517:74682725:74682944:74683063,	74682518	74682725	74682586	74682587	Frame_Shift_Ins	-	A	p.K55fs
STAD	TCGA-BR-8487-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177033976	177033976	Frame_Shift_Del	C	-	p.T45fs
STAD	TCGA-BR-8487-01	NSUN3	ENST00000476588.1	chr3	93781904:93781982:93783280:93783390:93802950:93803020,	93783281	93783390	93783345	93783346	Frame_Shift_Ins	-	A	p.E26fs
STAD	TCGA-BR-8487-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212518	185212519	Frame_Shift_Ins	-	A	p.F156fs
STAD	TCGA-BR-8487-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986251	2986252	Frame_Shift_Ins	-	A	p.G21fs
STAD	TCGA-BR-8487-01	SEC31A	ENST00000443462.2,ENST00000505984.1,ENST00000508502.1,ENST00000264405.5	chr4	83750152:83750211:83763337:83763634:83765538:83765613,	83763338	83763634	83763594	83763595	Frame_Shift_Ins	-	C	p.G889fs
STAD	TCGA-BR-8487-01	SEC31A	ENST00000432794.1	chr4	83750152:83750211:83763292:83763634:83765538:83765613,83752089:83752128:83763292:83763634:83765538:83765613,	83763293	83763634	83763594	83763595	Frame_Shift_Ins	-	C	p.G889fs
STAD	TCGA-BR-8487-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89400503:89400658:89407265:89407379:89408219:89408330,	89407266	89407379	89407334	89407334	Frame_Shift_Del	T	-	p.N602fs
STAD	TCGA-BR-8487-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36676993:36677286:36679728:36679962:36680496:36680691,	36679729	36679962	36679799	36679800	Frame_Shift_Ins	-	G	p.I310fs
STAD	TCGA-BR-8487-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374580	180374581	Frame_Shift_Ins	-	T	p.L247fs
STAD	TCGA-BR-8487-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374580	180374581	Frame_Shift_Ins	-	T	p.L247fs
STAD	TCGA-BR-8487-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496636	15496637	Frame_Shift_Ins	-	G	p.L393fs
STAD	TCGA-BR-8487-01	LMBRD1	ENST00000472827.1	chr6	70490385:70490446:70500187:70500364:70506704:70506777,	70500188	70500364	70500277	70500277	Frame_Shift_Del	A	-	p.S53fs
STAD	TCGA-BR-8487-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1,ENST00000417852.1	chr7	716865:716957:720192:720363:750965:751164,	720193	720363	720281	720281	Frame_Shift_Del	G	-	p.P87fs
STAD	TCGA-BR-8487-01	FBXO24	ENST00000465843.1,ENST00000474649.1,ENST00000241071.6,ENST00000360609.2	chr7	100184248:100184287:100187599:100187698:100187796:100187938,	100187600	100187698	100187652	100187653	Frame_Shift_Ins	-	G	p.R69fs
STAD	TCGA-BR-8487-01	TRIP6	ENST00000437505.1	chr7	100465015:100465228:100465729:100465855:100466116:100466488,	100465730	100465855	100465746	100465746	Frame_Shift_Del	G	-	p.R85fs
STAD	TCGA-BR-8487-01	CAPZA2	ENST00000426421.1	chr7	116544230:116544437:116546316:116546396:116550286:116550365,116544230:116544437:116546316:116546396:116550266:116550348,	116546317	116546396	116546326	116546327	Frame_Shift_Ins	-	A	p.G145fs
STAD	TCGA-BR-8487-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167474	Frame_Shift_Ins	-	A	p.L72fs
STAD	TCGA-BR-8487-01	RIMS2	ENST00000262231.10,ENST00000515551.1,ENST00000507677.1,ENST00000507740.1,ENST00000504942.2,ENST00000436393.2,ENST00000408894.2,ENST00000406091.3	chr8	104924359:104924400:104927722:104927822:104928641:104928765,	104927723	104927822	104927779	104927779	Frame_Shift_Del	A	-	p.V401fs
STAD	TCGA-BR-8487-01	TESK1	ENST00000336395.5	chr9	35606233:35606282:35606833:35606980:35607578:35607669,35606233:35606282:35606833:35606980:35607323:35607406,	35606834	35606980	35606843	35606844	Frame_Shift_Ins	-	G	p.N133fs
STAD	TCGA-BR-8487-01	ASTN2	ENST00000373986.3,ENST00000313400.4,ENST00000373996.3,ENST00000361209.2,ENST00000361477.3	chr9	119491270:119491375:119495677:119495802:119567910:119568099,	119495678	119495802	119495717	119495717	Frame_Shift_Del	C	-	p.V777fs
STAD	TCGA-BR-8487-01	TOR2A	ENST00000373281.5,ENST00000373284.5	chr9	130495663:130495839:130496577:130496843:130497398:130497554,	130496578	130496843	130496604	130496605	Frame_Shift_Ins	-	G	p.H131fs
STAD	TCGA-BR-8487-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1863fs
STAD	TCGA-BR-8487-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673439	Frame_Shift_Ins	-	G	p.R201fs
STAD	TCGA-BR-8487-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203598	91203599	Frame_Shift_Ins	-	A	p.F73fs
STAD	TCGA-BR-8487-01	TM9SF3	ENST00000485093.1,ENST00000371142.4	chr10	98282033:98282087:98286969:98287046:98287169:98287253,	98286970	98287046	98287018	98287018	Frame_Shift_Del	A	-	p.Y552fs
STAD	TCGA-BR-8487-01	INPP5F	ENST00000361976.2	chr10	121556972:121557152:121558054:121558122:121563684:121563809,	121558055	121558122	121558114	121558115	Frame_Shift_Ins	-	A	p.Y369fs
STAD	TCGA-BR-8487-01	ACCS	ENST00000263776.8,ENST00000527346.1	chr11	44104718:44104861:44104973:44105127:44105244:44105338,	44104974	44105127	44105022	44105022	Frame_Shift_Del	T	-	p.R434fs
STAD	TCGA-BR-8487-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018468	134018468	Frame_Shift_Del	G	-	p.I291fs
STAD	TCGA-BR-8487-01	VWF	ENST00000261405.5	chr12	6145553:6145657:6153456:6153617:6155888:6155983,	6153457	6153617	6153464	6153464	Frame_Shift_Del	G	-	p.P812fs
STAD	TCGA-BR-8487-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919295	57919296	Frame_Shift_Ins	-	G	p.P181fs
STAD	TCGA-BR-8487-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
STAD	TCGA-BR-8487-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515058	75515058	Frame_Shift_Del	T	-	p.N434fs
STAD	TCGA-BR-8487-01	USP8	ENST00000433963.1,ENST00000425032.3,ENST00000559329.1,ENST00000560730.1,ENST00000396444.3,ENST00000307179.4	chr15	50757243:50757388:50763829:50763992:50769045:50769190,	50763830	50763992	50763892	50763893	Frame_Shift_Ins	-	G	p.R250fs
STAD	TCGA-BR-8487-01	ANKS3	ENST00000591185.1,ENST00000592077.1,ENST00000585773.1,ENST00000589035.1,ENST00000590803.1,ENST00000590193.1,ENST00000446014.2,ENST00000304283.4,ENST00000591653.1	chr16	4747017:4747105:4747333:4747417:4747977:4748063,	4747334	4747417	4747358	4747359	Frame_Shift_Ins	-	G	p.L624fs
STAD	TCGA-BR-8487-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P596fs
STAD	TCGA-BR-8487-01	FOXN1	ENST00000579795.1	chr17	26833277:26833461:26850973:26851110:26851520:26851749,	26850974	26851110	26851000	26851000	Frame_Shift_Del	C	-	p.L4fs
STAD	TCGA-BR-8487-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749493	33749494	Frame_Shift_Ins	-	A	p.F185fs
STAD	TCGA-BR-8487-01	METTL2A	ENST00000311506.5,ENST00000333483.10	chr17	60518101:60518117:60522197:60522304:60525061:60525127,	60522198	60522304	60522298	60522299	Frame_Shift_Ins	-	A	p.F303fs
STAD	TCGA-BR-8487-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
STAD	TCGA-BR-8487-01	TIMM44	ENST00000600748.1,ENST00000270538.3,ENST00000595831.1	chr19	7999949:8000030:8002911:8003082:8005986:8006082,	8002912	8003082	8002975	8002975	Frame_Shift_Del	T	-	p.F84fs
STAD	TCGA-BR-8487-01	ARHGAP33	ENST00000590893.1,ENST00000314737.5,ENST00000007510.4	chr19	36266476:36266566:36268546:36268644:36268725:36268810,	36268547	36268644	36268610	36268611	Frame_Shift_Ins	-	G	p.A23fs
STAD	TCGA-BR-8487-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56201232:56201316:56203119:56203423:56204051:56204162,	56203120	56203423	56203184	56203184	Frame_Shift_Del	G	-	p.W276fs
STAD	TCGA-BR-8487-01	RRBP1	ENST00000377813.1	chr20	17623623:17623772:17639240:17641173:17660643:17660716,	17639241	17641173	17640808	17640809	Frame_Shift_Ins	-	G	p.P115fs
STAD	TCGA-BR-8487-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45875072	45875073	Frame_Shift_Ins	-	T	p.K662fs
STAD	TCGA-BR-8487-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L574fs
STAD	TCGA-BR-8487-01	FLNA	ENST00000369850.3,ENST00000344736.4,ENST00000360319.4,ENST00000422373.1,ENST00000420627.1	chrX	153593716:153593854:153594391:153594592:153594675:153594814,	153594392	153594592	153594580	153594581	Frame_Shift_Ins	-	C	p.G414fs
STAD	TCGA-BR-8588-01	PTCH2	ENST00000372192.3,ENST00000447098.2	chr1	45291921:45292059:45292159:45292440:45292573:45292754,	45292160	45292440	45292286	45292286	Frame_Shift_Del	G	-	p.F951fs
STAD	TCGA-BR-8590-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370873	240370873	Frame_Shift_Del	C	-	p.I924fs
STAD	TCGA-BR-8591-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226332	21226332	Frame_Shift_Del	T	-	p.V564fs
STAD	TCGA-BR-8591-01	CEPT1	ENST00000357172.4,ENST00000460443.1,ENST00000498239.1,ENST00000478042.1,ENST00000545121.1	chr1	111702001:111702149:111703776:111703918:111717500:111717585,	111703777	111703918	111703836	111703836	Frame_Shift_Del	T	-	p.M182fs
STAD	TCGA-BR-8591-01	SOAT1	ENST00000540564.1	chr1	179292571:179292630:179304640:179304792:179306971:179307031,179271811:179271937:179304640:179304792:179306971:179307031,	179304641	179304792	179304653	179304653	Frame_Shift_Del	T	-	p.P63fs
STAD	TCGA-BR-8591-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652984	1652984	Frame_Shift_Del	G	-	p.C857fs
STAD	TCGA-BR-8591-01	CYP20A1	ENST00000356079.4,ENST00000449301.1,ENST00000461371.1,ENST00000431118.1,ENST00000429815.2	chr2	204144781:204144836:204150334:204150455:204154487:204154599,	204150335	204150455	204150354	204150354	Frame_Shift_Del	T	-	p.C298fs
STAD	TCGA-BR-8591-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954221	240954222	Frame_Shift_Ins	-	G	p.H242fs
STAD	TCGA-BR-8591-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954221	240954222	Frame_Shift_Ins	-	G	p.H242fs
STAD	TCGA-BR-8591-01	GOLGA4	ENST00000450863.2	chr3	37292885:37292975:37323448:37323763:37330725:37330782,37292885:37292975:37323448:37323763:37327504:37327552,37315026:37315092:37323448:37323763:37327504:37327552,37315026:37315092:37323448:37323763:37330725:37330782,	37323449	37323763	37323751	37323751	Frame_Shift_Del	A	-	p.G155fs
STAD	TCGA-BR-8591-01	CRYBG3	ENST00000389622.2,ENST00000182096.4,ENST00000485253.1	chr3	97659991:97660150:97661127:97661287:97662069:97662414,	97661128	97661287	97661233	97661233	Frame_Shift_Del	A	-	p.N975fs
STAD	TCGA-BR-8591-01	PLXND1	ENST00000324093.4,ENST00000393239.1	chr3	129302967:129303076:129303227:129303405:129304794:129304891,	129303228	129303405	129303235	129303236	Frame_Shift_Ins	-	G	p.P674fs
STAD	TCGA-BR-8591-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12122472	12122473	Frame_Shift_Ins	-	C	p.T815fs
STAD	TCGA-BR-8591-01	COL11A2	ENST00000341947.2,ENST00000457788.1,ENST00000374714.1	chr6	33148887:33148947:33151921:33152101:33153477:33153555,33148887:33148947:33151921:33152101:33154403:33154595,33148887:33148947:33151921:33152101:33152768:33152831,	33151922	33152101	33152075	33152076	Frame_Shift_Ins	-	G	p.P322fs
STAD	TCGA-BR-8591-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296505	101296506	Frame_Shift_Del	AC	-	p.V107fs
STAD	TCGA-BR-8591-01	DAGLB	ENST00000436575.1,ENST00000297056.6	chr7	6472467:6472590:6474392:6474651:6485583:6485735,6472467:6472590:6474392:6474651:6475992:6476164,	6474393	6474651	6474591	6474591	Frame_Shift_Del	C	-	p.K161fs
STAD	TCGA-BR-8591-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732039	91732039	Frame_Shift_Del	G	-	p.M3743fs
STAD	TCGA-BR-8591-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732039	91732039	Frame_Shift_Del	G	-	p.M3743fs
STAD	TCGA-BR-8591-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479332	100479333	Frame_Shift_Ins	-	G	p.A101fs
STAD	TCGA-BR-8591-01	CUX1	ENST00000546411.2,ENST00000549414.2,ENST00000360264.3,ENST00000556210.1,ENST00000550008.2,ENST00000292535.7	chr7	101848393:101848450:101870646:101870949:101877331:101877520,	101870647	101870949	101870784	101870785	Frame_Shift_Ins	-	C	p.P1100fs
STAD	TCGA-BR-8591-01	MCPH1	ENST00000344683.5	chr8	6357372:6357450:6478974:6479212:6500514:6500891,	6478975	6479212	6479067	6479068	Frame_Shift_Ins	-	C	p.S769fs
STAD	TCGA-BR-8591-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36766828:36767053:36768447:36768637:36776340:36776415,	36768448	36768637	36768518	36768519	Frame_Shift_Ins	-	C	p.S801fs
STAD	TCGA-BR-8591-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138713233	138713234	Frame_Shift_Ins	-	G	p.R1092fs
STAD	TCGA-BR-8591-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-BR-8591-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851665	71851666	Frame_Shift_Ins	-	G	p.K144fs
STAD	TCGA-BR-8591-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717719	89717720	Frame_Shift_Del	TG	-	p.P248fs
STAD	TCGA-BR-8591-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717770	Frame_Shift_Del	A	-	p.L265fs
STAD	TCGA-BR-8591-01	SCUBE2	ENST00000309263.3,ENST00000519535.1,ENST00000457346.2,ENST00000520467.1	chr11	9047248:9047401:9051430:9051592:9052304:9052442,9049035:9049108:9051430:9051592:9052304:9052472,	9051431	9051592	9051502	9051503	Frame_Shift_Ins	-	T	p.N754fs
STAD	TCGA-BR-8591-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
STAD	TCGA-BR-8591-01	MMP10	ENST00000279441.4	chr11	102645918:102646052:102647010:102647155:102647342:102647507,	102647011	102647155	102647035	102647036	Frame_Shift_Ins	-	C	p.G303fs
STAD	TCGA-BR-8591-01	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505302	56505303	Frame_Shift_Ins	-	A	p.K369fs
STAD	TCGA-BR-8591-01	SLC12A6	ENST00000451844.2,ENST00000560164.1,ENST00000458406.2,ENST00000559664.1,ENST00000397707.2,ENST00000397702.2,ENST00000290209.5,ENST00000561080.1,ENST00000560611.1,ENST00000558589.1,ENST00000558667.1,ENST00000354181.3,ENST00000559523.1	chr15	34543099:34543258:34544370:34544585:34546548:34546790,	34544371	34544585	34544457	34544458	Frame_Shift_Ins	-	A	p.F416fs
STAD	TCGA-BR-8591-01	SNX29	ENST00000562510.1,ENST00000306030.3,ENST00000564791.1,ENST00000566228.1,ENST00000323433.4	chr16	12450109:12450136:12492302:12492358:12497304:12497386,	12492303	12492358	12492337	12492338	Frame_Shift_Del	AG	-	p.Q260fs
STAD	TCGA-BR-8591-01	ULK2	ENST00000574732.2,ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19741842:19741896:19744801:19744860:19746433:19746451,	19744802	19744860	19744820	19744821	Frame_Shift_Ins	-	T	p.N229fs
STAD	TCGA-BR-8591-01	TEX2	ENST00000258991.3	chr17	62254684:62254831:62265527:62265796:62270918:62271249,	62265528	62265796	62265578	62265579	Frame_Shift_Ins	-	G	p.Q799fs
STAD	TCGA-BR-8591-01	TEX2	ENST00000583501.1,ENST00000583097.1,ENST00000584379.1	chr17	62254684:62254831:62265527:62265775:62270918:62271249,	62265528	62265775	62265578	62265579	Frame_Shift_Ins	-	G	p.Q799fs
STAD	TCGA-BR-8591-01	UBE2O	ENST00000319380.7,ENST00000587127.1	chr17	74387836:74387894:74387990:74388194:74391805:74391942,	74387991	74388194	74388089	74388090	Frame_Shift_Ins	-	G	p.H1018fs
STAD	TCGA-BR-8591-01	MYOM1	ENST00000261606.7,ENST00000356443.4,ENST00000400569.3	chr18	3149142:3149199:3151691:3151891:3154944:3155086,	3151692	3151891	3151848	3151849	Frame_Shift_Del	GT	-	p.P563fs
STAD	TCGA-BR-8591-01	CEP250	ENST00000397527.1	chr20	34067800:34067970:34078462:34078630:34079037:34079172,	34078463	34078630	34078524	34078525	Frame_Shift_Ins	-	A	p.E883fs
STAD	TCGA-BR-8677-01	NCAPD3	ENST00000534548.2,ENST00000534532.2,ENST00000525964.2	chr11	134080163:134080348:134086829:134086992:134090465:134090620,	134086830	134086992	134086906	134086907	Frame_Shift_Ins	-	CA	p.K102fs
STAD	TCGA-BR-8680-01	SHROOM3	ENST00000296043.6	chr4	77651956:77652088:77659913:77663079:77670169:77670243,	77659914	77663079	77660179	77660180	Frame_Shift_Ins	-	T	p.G284fs
STAD	TCGA-BR-8680-01	C6orf62	ENST00000378119.4,ENST00000540769.1,ENST00000378102.3	chr6	24709004:24709139:24714545:24714668:24716375:24716549,	24714546	24714668	24714605	24714606	Frame_Shift_Ins	-	T	p.I124fs
STAD	TCGA-BR-8680-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450184	85450185	Frame_Shift_Ins	-	A	p.E538fs
STAD	TCGA-BR-8690-01	PARD3B	ENST00000358768.2,ENST00000462231.1,ENST00000406610.2,ENST00000349953.3	chr2	206110501:206110546:206165253:206165460:206166187:206166235,	206165254	206165460	206165334	206165335	Frame_Shift_Ins	-	GA	p.A755fs
STAD	TCGA-BR-8690-01	TRMT11	ENST00000334379.5,ENST00000453993.2,ENST00000368332.3	chr6	126320685:126320759:126329537:126329618:126332398:126332420,	126329538	126329618	126329563	126329563	Frame_Shift_Del	T	-	p.H235fs
STAD	TCGA-BR-A44U-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448299	Frame_Shift_Ins	-	G	p.R117fs
STAD	TCGA-BR-A4CS-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799060	39799061	Frame_Shift_Ins	-	G	p.R707fs
STAD	TCGA-BR-A4IY-01	SNX17	ENST00000233575.2,ENST00000464279.1	chr2	27593531:27593673:27595489:27595607:27596113:27596178,27594135:27594210:27595489:27595607:27595906:27595971,27594135:27594210:27595489:27595607:27596113:27596155,	27595490	27595607	27595528	27595529	Frame_Shift_Ins	-	C	p.F59fs
STAD	TCGA-BR-A4IY-01	ADAMTS16	ENST00000274181.7,ENST00000511368.1,ENST00000433402.2	chr5	5182156:5182418:5186164:5186364:5187837:5187921,	5186165	5186364	5186198	5186217	Frame_Shift_Del	TCTTGCCAGATGAGTATAAG	-	p.I266fs
STAD	TCGA-BR-A4IY-01	FOXN1	ENST00000579795.1,ENST00000226247.2	chr17	26856111:26856242:26857766:26857863:26861348:26861556,	26857767	26857863	26857812	26857825	Frame_Shift_Del	TCCCGTCAGCGAGA	-	p.L292fs
STAD	TCGA-BR-A4J8-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578267	7578268	Frame_Shift_Ins	-	A	p.L194fs
STAD	TCGA-BR-A4PD-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138376531:138376677:138382747:138382871:138383877:138384045,	138382748	138382871	138382756	138382757	Frame_Shift_Ins	-	T	p.T930fs
STAD	TCGA-BR-A4PE-01	DCLK1	ENST00000360631.3,ENST00000255448.4	chr13	36413228:36413313:36428635:36428730:36445360:36445477,	36428636	36428730	36428642	36428643	Frame_Shift_Ins	-	CC	p.K343fs
STAD	TCGA-BR-A4QL-01	KANK4	ENST00000371153.4	chr1	62737195:62737261:62738875:62740759:62747220:62747306,	62738876	62740759	62740427	62740428	Frame_Shift_Ins	-	G	p.Q117fs
STAD	TCGA-BR-A4QL-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-BR-A4QL-01	FAM189B	ENST00000472550.1	chr1	155223874:155223985:155224190:155224247:155224443:155224699,155223415:155223523:155224190:155224247:155224443:155224699,	155224191	155224247	155224232	155224233	Frame_Shift_Ins	-	C	p.V81fs
STAD	TCGA-BR-A4QL-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134660	161134660	Frame_Shift_Del	A	-	p.I473fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128510	202128511	Frame_Shift_Ins	-	C	p.G7fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128510	202128511	Frame_Shift_Ins	-	C	p.G7fs
STAD	TCGA-BR-A4QL-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128510	202128511	Frame_Shift_Ins	-	C	p.G7fs
STAD	TCGA-BR-A4QL-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204210502:204210609:204210812:204210942:204213991:204214131,	204210813	204210942	204210891	204210892	Frame_Shift_Ins	-	G	p.L742fs
STAD	TCGA-BR-A4QL-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315787	208315788	Frame_Shift_Ins	-	G	p.H465fs
STAD	TCGA-BR-A4QL-01	SCCPDH	ENST00000366510.3	chr1	246923258:246923378:246923472:246923529:246927547:246927659,	246923473	246923529	246923499	246923500	Frame_Shift_Ins	-	T	p.Y320fs
STAD	TCGA-BR-A4QL-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573659	121573660	Frame_Shift_Ins	-	A	p.V109fs
STAD	TCGA-BR-A4QL-01	INTS12	ENST00000451321.2	chr4	106616718:106616825:106621006:106621171:106629794:106629816,	106621007	106621171	106621122	106621122	Frame_Shift_Del	A	-	p.L14fs
STAD	TCGA-BR-A4QL-01	NDST4	ENST00000504854.1,ENST00000264363.2	chr4	115769370:115769494:115773880:115773977:115791923:115792106,	115773881	115773977	115773884	115773885	Frame_Shift_Ins	-	T	p.T605fs
STAD	TCGA-BR-A4QL-01	FNIP2	ENST00000264433.6,ENST00000512986.1,ENST00000379346.3	chr4	159780729:159780818:159782493:159782640:159782758:159782928,	159782494	159782640	159782571	159782572	Frame_Shift_Ins	-	A	p.E409fs
STAD	TCGA-BR-A4QL-01	SMAP1	ENST00000370452.3,ENST00000316999.5,ENST00000370455.3	chr6	71508359:71508440:71546643:71546731:71562242:71562367,	71546644	71546731	71546674	71546674	Frame_Shift_Del	A	-	p.P202fs
STAD	TCGA-BR-A4QL-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975473	13975474	Frame_Shift_Ins	-	G	p.P138fs
STAD	TCGA-BR-A4QL-01	MAK16	ENST00000360128.6,ENST00000518389.1	chr8	33354142:33354259:33354749:33354815:33355949:33356164,	33354750	33354815	33354755	33354756	Frame_Shift_Ins	-	G	p.V215fs
STAD	TCGA-BR-A4QL-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000522181.1	chr8	92406024:92406079:92406163:92406267:92407289:92407877,	92406164	92406267	92406218	92406218	Frame_Shift_Del	T	-	p.I629fs
STAD	TCGA-BR-A4QL-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35092523	35092523	Frame_Shift_Del	C	-	p.G454fs
STAD	TCGA-BR-A4QL-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927806	57927807	Frame_Shift_Ins	-	G	p.P205fs
STAD	TCGA-BR-A4QL-01	SLC24A5	ENST00000341459.3,ENST00000449382.2	chr15	48428967:48429160:48431165:48431372:48433309:48433411,	48431166	48431372	48431211	48431212	Frame_Shift_Ins	-	T	p.I306fs
STAD	TCGA-BR-A4QL-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331226	69331226	Frame_Shift_Del	T	-	p.P467fs
STAD	TCGA-BR-A4QL-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939871	Frame_Shift_Ins	-	G	p.P605fs
STAD	TCGA-BR-A4QL-01	U2AF2	ENST00000308924.4,ENST00000450554.2	chr19	56172403:56172555:56173867:56173984:56174971:56175110,	56173868	56173984	56173906	56173907	Frame_Shift_Ins	-	G	p.L175fs
STAD	TCGA-BR-A4QL-01	POLDIP3	ENST00000451060.2	chr22	42983511:42983578:42987960:42988090:42991542:42991609,42981892:42981974:42987960:42988090:42991542:42991609,	42987961	42988090	42988011	42988012	Frame_Shift_Ins	-	T	p.K341fs
STAD	TCGA-BR-A4QL-01	ALG13	ENST00000394780.3,ENST00000470971.1,ENST00000251943.4,ENST00000436609.1	chrX	110970559:110970673:110970841:110970998:110971412:110971533,	110970842	110970998	110970904	110970905	Frame_Shift_Ins	-	C	p.T718fs
STAD	TCGA-BR-A4QL-01	STAG2	ENST00000371144.3,ENST00000428941.1,ENST00000371160.1,ENST00000371145.3,ENST00000458176.1,ENST00000354548.5,ENST00000218089.9,ENST00000371157.3,ENST00000455404.1,ENST00000435215.1	chrX	123171376:123171473:123176418:123176495:123179013:123179058,	123176419	123176495	123176475	123176476	Frame_Shift_Ins	-	G	p.K147fs
STAD	TCGA-BR-A4QM-01	RNF43	ENST00000577716.1	chr17	56448271:56448394:56492686:56493120:56494377:56494446,	56492687	56493120	56492798	56492799	Frame_Shift_Ins	-	A	p.I47fs
STAD	TCGA-CD-5798-01	NPEPPS	ENST00000525048.1	chr17	45679081:45679113:45681280:45681415:45682831:45682918,	45681281	45681415	45681404	45681408	Frame_Shift_Del	CTCTT	-	p.D621fs
STAD	TCGA-CD-5800-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	41984072:41984159:41990405:41990581:42041214:42041360,	41990406	41990581	41990510	41990511	Frame_Shift_Ins	-	C	p.G1760fs
STAD	TCGA-CD-5800-01	MAGI3	ENST00000369615.1,ENST00000307546.9,ENST00000369611.4,ENST00000369617.4	chr1	114128008:114128218:114133105:114133280:114137102:114137182,	114133106	114133280	114133188	114133189	Frame_Shift_Ins	-	A	p.F282fs
STAD	TCGA-CD-5800-01	HBP1	ENST00000222574.4,ENST00000485846.1,ENST00000463202.1,ENST00000468410.1	chr7	106827013:106827126:106836278:106836596:106840604:106840745,106830617:106830762:106836278:106836596:106840604:106840745,	106836279	106836596	106836508	106836508	Frame_Shift_Del	A	-	p.N432fs
STAD	TCGA-CD-5802-01	LTBP4	ENST00000595665.1,ENST00000597071.1,ENST00000600499.1,ENST00000593463.1	chr19	41120220:41120352:41122794:41122926:41123005:41123094,41120220:41120352:41122794:41122926:41125251:41125281,	41122795	41122926	41122902	41122902	Frame_Shift_Del	C	-	p.Q1040fs
STAD	TCGA-CD-5802-01	LTBP4	ENST00000594448.1	chr19	41120220:41120352:41122794:41122948:41125251:41125281,	41122795	41122948	41122902	41122902	Frame_Shift_Del	C	-	p.Q1040fs
STAD	TCGA-CD-5802-01	SREBF2	ENST00000424354.1	chr22	42229167:42229362:42262834:42263284:42264614:42264796,	42262835	42263284	42262865	42262866	Frame_Shift_Del	GA	-	p.G40fs
STAD	TCGA-CD-8526-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127594	170127595	Frame_Shift_Ins	-	A	p.S714fs
STAD	TCGA-CD-8526-01	CARM1	ENST00000586221.1,ENST00000344150.4,ENST00000590699.1,ENST00000589693.1,ENST00000590039.1	chr19	10982585:10982598:11015626:11015752:11018714:11018821,	11015627	11015752	11015670	11015671	Frame_Shift_Del	AG	-	p.T88fs
STAD	TCGA-CD-8527-01	CDC73	ENST00000367435.3	chr1	193107214:193107303:193110979:193111196:193116996:193117095,	193110980	193111196	193111146	193111147	Frame_Shift_Del	AG	-	p.S226fs
STAD	TCGA-CD-8527-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832910	24832911	Frame_Shift_Ins	-	A	p.K1570fs
STAD	TCGA-CD-8529-01	SETMAR	ENST00000425863.1	chr3	4345054:4345210:4354581:4354913:4355350:4355445,4345054:4345210:4354581:4354913:4355330:4355445,	4354582	4354913	4354664	4354671	Frame_Shift_Del	CTCCCTGC	-	p.T80fs
STAD	TCGA-CD-8529-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194146070:194146258:194147803:194147981:194149573:194149646,	194147804	194147981	194147850	194147851	Frame_Shift_Ins	-	A	p.W1027fs
STAD	TCGA-CD-8529-01	SUB1	ENST00000513013.1,ENST00000265073.4,ENST00000511175.1,ENST00000515355.1,ENST00000502897.1,ENST00000506237.1,ENST00000512913.1,ENST00000504789.1	chr5	32591674:32591791:32599066:32599175:32601110:32601132,	32599067	32599175	32599137	32599150	Frame_Shift_Del	GGATGGATCCTGAA	-	p.W89fs
STAD	TCGA-CD-8529-01	CTSB	ENST00000531089.1,ENST00000533455.1,ENST00000353047.6,ENST00000534510.1,ENST00000453527.2,ENST00000415599.2,ENST00000530640.2,ENST00000345125.3,ENST00000434271.1,ENST00000531551.1,ENST00000420692.2	chr8	11702590:11702731:11703169:11703298:11704560:11704677,	11703170	11703298	11703288	11703288	Frame_Shift_Del	T	-	p.H269fs
STAD	TCGA-CD-8530-01	CDC23	ENST00000394886.2	chr5	137534114:137534212:137534293:137534471:137536795:137536928,	137534294	137534471	137534434	137534437	Frame_Shift_Del	TCTT	-	p.K230fs
STAD	TCGA-CD-8531-01	ITPKB	ENST00000429204.1	chr1	226836372:226836472:226923227:226925364:226926741:226926864,	226923228	226925364	226924473	226924474	Frame_Shift_Ins	-	CTGCGAGGAG	p.Q229fs
STAD	TCGA-CD-8531-01	EEF1A1	ENST00000490569.1,ENST00000488500.1,ENST00000331523.2,ENST00000356303.2,ENST00000309268.6	chr6	74228920:74228951:74229059:74229239:74229605:74229700,	74229060	74229239	74229194	74229209	Frame_Shift_Del	TCAGTTTATCCAAGAC	-	p.V59fs
STAD	TCGA-CD-8532-01	ATP1A1	ENST00000369494.1,ENST00000537345.1,ENST00000418797.1,ENST00000295598.5,ENST00000369496.4	chr1	116927404:116927464:116929909:116930113:116930752:116930777,	116929910	116930113	116930018	116930019	Frame_Shift_Ins	-	G	p.F97fs
STAD	TCGA-CD-8532-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53227671:53227819:53227945:53228070:53228158:53228340,	53227946	53228070	53228038	53228039	Frame_Shift_Ins	-	A	p.M759fs
STAD	TCGA-CD-8534-01	SULF1	ENST00000260128.4,ENST00000419716.3,ENST00000521946.1,ENST00000402687.4,ENST00000458141.2	chr8	70515426:70515555:70515834:70515891:70517037:70517167,	70515835	70515891	70515861	70515862	Frame_Shift_Ins	-	T	p.I406fs
STAD	TCGA-CD-8534-01	ZSCAN18	ENST00000600404.1,ENST00000594191.1,ENST00000240727.6,ENST00000601144.1	chr19	58598682:58598771:58600054:58600204:58601231:58601328,	58600055	58600204	58600101	58600102	Frame_Shift_Ins	-	GG	p.P225fs
STAD	TCGA-CD-8535-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76937770	76937771	Frame_Shift_Ins	-	T	p.K993fs
STAD	TCGA-CD-8536-01	DNAJC8	ENST00000489277.1,ENST00000263697.4	chr1	28531768:28531860:28534852:28534924:28536482:28536577,	28534853	28534924	28534907	28534908	Frame_Shift_Ins	-	T	p.K139fs
STAD	TCGA-CD-8536-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203689676:203689868:203690324:203690538:203691605:203691817,	203690325	203690538	203690406	203690407	Frame_Shift_Ins	-	C	p.E893fs
STAD	TCGA-CD-8536-01	NRXN1	ENST00000401669.2,ENST00000405472.3,ENST00000406316.2,ENST00000406859.3,ENST00000402717.3,ENST00000331040.5,ENST00000404971.1	chr2	50758364:50758568:50765390:50765774:50779724:50780163,	50765391	50765774	50765683	50765683	Frame_Shift_Del	C	-	p.L618fs
STAD	TCGA-CD-8536-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52678719:52678805:52682359:52682458:52685757:52685826,	52682360	52682458	52682389	52682390	Frame_Shift_Del	AA	-	p.Y262fs
STAD	TCGA-CD-8536-01	CENPH	ENST00000283006.2,ENST00000515001.1,ENST00000502689.1	chr5	68498745:68498797:68504022:68504186:68505533:68505628,	68504023	68504186	68504111	68504112	Frame_Shift_Del	AG	-	p.S192fs
STAD	TCGA-CD-8536-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-CD-8536-01	DNAH8	ENST00000327475.6,ENST00000373278.4,ENST00000449981.2	chr6	38691112:38691247:38697677:38697762:38702249:38702290,	38697678	38697762	38697695	38697696	Frame_Shift_Ins	-	T	p.N181fs
STAD	TCGA-CD-8536-01	ROS1	ENST00000368507.3,ENST00000368508.3	chr6	117609462:117609965:117622136:117622300:117629956:117630091,	117622137	117622300	117622205	117622206	Frame_Shift_Ins	-	A	p.F2222fs
STAD	TCGA-CD-8536-01	AGPAT5	ENST00000530716.1,ENST00000523234.1,ENST00000285518.6	chr8	6605204:6605349:6612571:6612695:6614683:6614707,	6612572	6612695	6612594	6612595	Frame_Shift_Ins	-	A	p.P256fs
STAD	TCGA-CD-8536-01	TEK	ENST00000406359.4,ENST00000519080.1,ENST00000519097.1,ENST00000380036.4	chr9	27185482:27185627:27190526:27190688:27192486:27192621,	27190527	27190688	27190548	27190549	Frame_Shift_Ins	-	C	p.A407fs
STAD	TCGA-CD-8536-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35092523	35092523	Frame_Shift_Del	C	-	p.G454fs
STAD	TCGA-CD-8536-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805647	125805647	Frame_Shift_Del	G	-	p.H28fs
STAD	TCGA-CD-8536-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018609	1018612	Frame_Shift_Del	TGTA	-	p.Y1397fs
STAD	TCGA-CD-8536-01	DCUN1D5	ENST00000529281.1,ENST00000260247.5,ENST00000531571.1,ENST00000527260.1,ENST00000525420.1	chr11	102937216:102937296:102953476:102953568:102953984:102954055,	102953477	102953568	102953515	102953516	Frame_Shift_Ins	-	A	p.F101fs
STAD	TCGA-CD-8536-01	NR2C1	ENST00000551647.1	chr12	95416109:95416179:95418925:95419031:95422162:95422285,95416109:95416179:95418925:95419031:95434251:95434373,	95418926	95419031	95419000	95419001	Frame_Shift_Del	TA	-	p.I521fs
STAD	TCGA-CD-8536-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58831996	58831997	Frame_Shift_Ins	-	AG	p.Q1063fs
STAD	TCGA-CD-8536-01	MSLN	ENST00000563941.1,ENST00000566549.1,ENST00000566269.2,ENST00000561896.1,ENST00000545450.2	chr16	816334:816490:816667:816810:816884:817012,	816668	816810	816794	816794	Frame_Shift_Del	C	-	p.V460fs
STAD	TCGA-CD-8536-01	MSLN	ENST00000382862.3	chr16	816334:816490:816643:816810:816884:817012,	816644	816810	816794	816794	Frame_Shift_Del	C	-	p.V460fs
STAD	TCGA-CD-8536-01	KCNH6	ENST00000456941.2,ENST00000583465.1,ENST00000314672.5,ENST00000581784.1	chr17	61619601:61619795:61620936:61621021:61621609:61621772,	61620937	61621021	61620959	61620960	Frame_Shift_Ins	-	C	p.S724fs
STAD	TCGA-CD-8536-01	GATAD2A	ENST00000358713.3,ENST00000429563.2,ENST00000252577.5,ENST00000418032.3,ENST00000404158.1,ENST00000360315.3	chr19	19606562:19606694:19606860:19607028:19609251:19609531,	19606861	19607028	19606916	19606917	Frame_Shift_Ins	-	C	p.A271fs
STAD	TCGA-CD-8536-01	AFF2	ENST00000370458.1,ENST00000370457.5,ENST00000342251.3	chrX	147582528:147582664:147733519:147733640:147743428:147744289,	147733520	147733640	147733548	147733548	Frame_Shift_Del	A	-	p.L25fs
STAD	TCGA-CD-A486-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30492600	30492603	Frame_Shift_Del	GCAC	-	p.V144fs
STAD	TCGA-CD-A486-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93247438:93247535:93250956:93251064,	93247439	93247535	93247481	93247482	Frame_Shift_Ins	-	A	p.A383fs
STAD	TCGA-CD-A487-01	LEPROTL1	ENST00000321250.8,ENST00000518192.1	chr8	29959455:29959489:29961815:29962002:29994787:29995213,29959455:29959489:29961815:29962002:29963261:29963544,	29961816	29962002	29961841	29961842	Frame_Shift_Ins	-	T	p.L39fs
STAD	TCGA-CD-A487-01	NSFL1C	ENST00000381653.5	chr20	1424379:1424556:1426310:1426794:1433137:1433275,	1426311	1426794	1426465	1426466	Frame_Shift_Ins	-	G	p.Q266fs
STAD	TCGA-CD-A487-01	NSFL1C	ENST00000350991.4,ENST00000461211.1,ENST00000381658.4,ENST00000216879.4,ENST00000476071.1,ENST00000353088.2,ENST00000555944.1	chr20	1424379:1424556:1426310:1426475:1433137:1433275,	1426311	1426475	1426465	1426466	Frame_Shift_Ins	-	G	p.Q266fs
STAD	TCGA-CD-A48A-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000276609.3,ENST00000522181.1	chr8	92406024:92406079:92406163:92406267:92407289:92407877,	92406164	92406267	92406218	92406219	Frame_Shift_Ins	-	T	p.I629fs
STAD	TCGA-CD-A48C-01	CNTROB	ENST00000380255.3,ENST00000576723.1,ENST00000571632.1,ENST00000576536.1,ENST00000565740.1,ENST00000563694.1,ENST00000380262.3	chr17	7851233:7851297:7851474:7851645:7851804:7851933,	7851475	7851645	7851480	7851483	Frame_Shift_Del	CTGA	-	p.P738fs
STAD	TCGA-CD-A4MG-01	KIF1B	ENST00000377086.1,ENST00000465635.1,ENST00000377081.1,ENST00000483340.1,ENST00000263934.6	chr1	10405902:10406011:10407818:10407885:10408706:10408791,	10407819	10407885	10407871	10407872	Frame_Shift_Ins	-	T	p.T1283fs
STAD	TCGA-CD-A4MG-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226332	21226332	Frame_Shift_Del	T	-	p.V564fs
STAD	TCGA-CD-A4MG-01	KIAA1522	ENST00000373481.3,ENST00000401073.2,ENST00000373480.1	chr1	33235273:33235387:33235480:33238042:33238465:33238798,	33235481	33238042	33236965	33236965	Frame_Shift_Del	C	-	p.S728fs
STAD	TCGA-CD-A4MG-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836080	35836081	Frame_Shift_Ins	-	A	p.C344fs
STAD	TCGA-CD-A4MG-01	POMGNT1	ENST00000371992.1,ENST00000535522.1,ENST00000371984.3,ENST00000371986.3	chr1	46659945:46660073:46660224:46660323:46660515:46660633,	46660225	46660323	46660270	46660271	Frame_Shift_Ins	-	C	p.D236fs
STAD	TCGA-CD-A4MG-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081758	Frame_Shift_Ins	-	G	p.P117fs
STAD	TCGA-CD-A4MG-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93142714:93142775:93159358:93159456:93159855:93159945,	93159359	93159456	93159366	93159367	Frame_Shift_Ins	-	T	p.M408fs
STAD	TCGA-CD-A4MG-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818826	214818827	Frame_Shift_Ins	-	A	p.S1971fs
STAD	TCGA-CD-A4MG-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305786	27305787	Frame_Shift_Ins	-	G	p.L449fs
STAD	TCGA-CD-A4MG-01	ETAA1	ENST00000272342.5	chr2	67626358:67626429:67626681:67626758:67629993:67630106,	67626682	67626758	67626692	67626693	Frame_Shift_Ins	-	A	p.R121fs
STAD	TCGA-CD-A4MG-01	BUB1	ENST00000535254.1,ENST00000302759.6	chr2	111398610:111398782:111398883:111399041:111399218:111399266,	111398884	111399041	111399006	111399006	Frame_Shift_Del	T	-	p.V888fs
STAD	TCGA-CD-A4MG-01	ITGA6	ENST00000412899.1,ENST00000497107.1,ENST00000264107.7,ENST00000409080.1	chr2	173333852:173334108:173335701:173335833:173337501:173337618,173333852:173334108:173335701:173335833:173338782:173338840,	173335702	173335833	173335733	173335734	Frame_Shift_Ins	-	T	p.T225fs
STAD	TCGA-CD-A4MG-01	GLB1	ENST00000307377.8,ENST00000399402.3,ENST00000307363.5,ENST00000445488.2	chr3	33038220:33038836:33055547:33055802:33058200:33058332,	33055548	33055802	33055705	33055705	Frame_Shift_Del	C	-	p.G574fs
STAD	TCGA-CD-A4MG-01	SCN11A	ENST00000450244.1,ENST00000302328.3,ENST00000456224.3,ENST00000444237.2	chr3	38936023:38936455:38938335:38938716:38941384:38941564,	38938336	38938716	38938482	38938483	Frame_Shift_Ins	-	C	p.D753fs
STAD	TCGA-CD-A4MG-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000337303.4	chr3	52595782:52595984:52597298:52597509:52598065:52598249,	52597299	52597509	52597340	52597340	Frame_Shift_Del	G	-	p.L1349fs
STAD	TCGA-CD-A4MG-01	TMEM175	ENST00000508204.1,ENST00000509508.1,ENST00000515740.1	chr4	926274:926328:944208:944306:944994:945046,	944209	944306	944297	944298	Frame_Shift_Del	CA	-	p.A94fs
STAD	TCGA-CD-A4MG-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263965	33263966	Frame_Shift_Ins	-	C	p.G203fs
STAD	TCGA-CD-A4MG-01	DNAH8	ENST00000327475.6,ENST00000373278.4,ENST00000449981.2	chr6	38691112:38691247:38697677:38697762:38702249:38702290,	38697678	38697762	38697695	38697696	Frame_Shift_Ins	-	T	p.N181fs
STAD	TCGA-CD-A4MG-01	PHF3	ENST00000481385.2,ENST00000509876.1,ENST00000494284.2,ENST00000393387.1,ENST00000262043.3	chr6	64389900:64390062:64394029:64395812:64401626:64401933,	64394030	64395812	64394097	64394098	Frame_Shift_Ins	-	A	p.T158fs
STAD	TCGA-CD-A4MG-01	LAMA2	ENST00000421865.2	chr6	129824235:129824425:129826344:129826500:129828633:129828787,	129826345	129826500	129826417	129826418	Frame_Shift_Ins	-	A	p.P2873fs
STAD	TCGA-CD-A4MG-01	PEX1	ENST00000541751.1,ENST00000496420.1,ENST00000438045.1,ENST00000248633.4,ENST00000484913.1	chr7	92132354:92132509:92134045:92134216:92135561:92135658,	92134046	92134216	92134190	92134191	Frame_Shift_Ins	-	T	p.T643fs
STAD	TCGA-CD-A4MG-01	ST18	ENST00000521824.1,ENST00000276480.7,ENST00000522251.1,ENST00000521582.1	chr8	53055489:53055605:53062291:53062537:53071457:53071669,	53062292	53062537	53062482	53062483	Frame_Shift_Ins	-	T	p.N621fs
STAD	TCGA-CD-A4MG-01	AZIN1	ENST00000522311.1,ENST00000347770.4,ENST00000520402.1,ENST00000337198.5	chr8	103851129:103851144:103851877:103852051:103855778:103855957,	103851878	103852051	103852031	103852031	Frame_Shift_Del	A	-	p.V42fs
STAD	TCGA-CD-A4MG-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125058007:125058142:125061847:125061997:125072420:125072531,	125061848	125061997	125061917	125061918	Frame_Shift_Ins	-	C	p.E931fs
STAD	TCGA-CD-A4MG-01	MTSS1	ENST00000431961.2,ENST00000354184.4	chr8	125568053:125568145:125568472:125568595:125575022:125575230,	125568473	125568595	125568558	125568558	Frame_Shift_Del	C	-	p.G444fs
STAD	TCGA-CD-A4MG-01	MTSS1	ENST00000524090.1,ENST00000325064.5,ENST00000520094.1,ENST00000523587.1,ENST00000519168.1,ENST00000518547.1,ENST00000395508.2	chr8	125568053:125568145:125568472:125568646:125575022:125575230,125568053:125568145:125568472:125568646:125569921:125570116,	125568473	125568646	125568558	125568558	Frame_Shift_Del	C	-	p.G444fs
STAD	TCGA-CD-A4MG-01	RABEPK	ENST00000259460.8	chr9	127975648:127975801:127982817:127982979:127990188:127990338,127969842:127970000:127982817:127982979:127990188:127990338,	127982818	127982979	127982926	127982927	Frame_Shift_Del	GA	-	p.G158fs
STAD	TCGA-CD-A4MG-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-CD-A4MG-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459506	27459507	Frame_Shift_Del	TG	-	p.D539fs
STAD	TCGA-CD-A4MG-01	ARMC4	ENST00000537576.1,ENST00000305242.5,ENST00000545014.1	chr10	28229491:28229734:28233150:28233360:28233744:28233891,	28233151	28233360	28233164	28233164	Frame_Shift_Del	C	-	p.G577fs
STAD	TCGA-CD-A4MG-01	PPRC1	ENST00000413464.2,ENST00000489648.1	chr10	103904006:103904064:103908128:103908278:103908384:103908451,	103908129	103908278	103908248	103908248	Frame_Shift_Del	C	-	p.S1507fs
STAD	TCGA-CD-A4MG-01	IKZF5	ENST00000496605.1	chr10	124755662:124755692:124758008:124758174:124766541:124766692,	124758009	124758174	124758127	124758128	Frame_Shift_Ins	-	T	p.K5fs
STAD	TCGA-CD-A4MG-01	IKZF5	ENST00000368886.5	chr10	124755662:124755692:124758008:124758187:124766541:124766692,	124758009	124758187	124758127	124758128	Frame_Shift_Ins	-	T	p.K5fs
STAD	TCGA-CD-A4MG-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1,ENST00000529447.1	chr11	57463391:57463515:57464232:57464345:57466030:57466307,	57464233	57464345	57464258	57464258	Frame_Shift_Del	C	-	p.S345fs
STAD	TCGA-CD-A4MG-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499816	42499817	Frame_Shift_Ins	-	A	p.L223fs
STAD	TCGA-CD-A4MG-01	RARG	ENST00000425354.2,ENST00000394426.1	chr12	53609429:53609578:53621145:53621471:53624952:53625016,	53621146	53621471	53621285	53621285	Frame_Shift_Del	C	-	p.P16fs
STAD	TCGA-CD-A4MG-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
STAD	TCGA-CD-A4MG-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025103	58025104	Frame_Shift_Ins	-	C	p.G88fs
STAD	TCGA-CD-A4MG-01	APAF1	ENST00000339433.3,ENST00000547045.1,ENST00000550527.1,ENST00000359972.2,ENST00000549007.1,ENST00000551964.1,ENST00000357310.1	chr12	99065312:99065497:99071202:99071329:99074054:99074180,	99071203	99071329	99071207	99071208	Frame_Shift_Ins	-	A	p.N599fs
STAD	TCGA-CD-A4MG-01	CLYBL	ENST00000444838.2,ENST00000376355.3,ENST00000376354.1	chr13	100511114:100511303:100517071:100517165:100518493:100518661,	100517072	100517165	100517133	100517134	Frame_Shift_Ins	-	T	p.V201fs
STAD	TCGA-CD-A4MG-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542718	114542719	Frame_Shift_Ins	-	C	p.G150fs
STAD	TCGA-CD-A4MG-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560445	32560445	Frame_Shift_Del	A	-	p.S190fs
STAD	TCGA-CD-A4MG-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-CD-A4MG-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-CD-A4MG-01	PPP2R5E	ENST00000555899.1,ENST00000337537.3,ENST00000556150.1,ENST00000556484.1,ENST00000422769.2,ENST00000553266.1	chr14	63863303:63863434:63881857:63881950:63888710:63888812,	63881858	63881950	63881885	63881885	Frame_Shift_Del	T	-	p.Y175fs
STAD	TCGA-CD-A4MG-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878534	89878534	Frame_Shift_Del	G	-	p.P96fs
STAD	TCGA-CD-A4MG-01	ZFYVE19	ENST00000355341.4,ENST00000569057.1,ENST00000564258.1,ENST00000570108.1,ENST00000336455.5,ENST00000561768.1	chr15	41102846:41102955:41104896:41105100:41105535:41105615,	41104897	41105100	41105094	41105095	Frame_Shift_Del	GA	-	p.P341fs
STAD	TCGA-CD-A4MG-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944500	Frame_Shift_Del	G	-	p.T455fs
STAD	TCGA-CD-A4MG-01	VPS53	ENST00000573028.1,ENST00000437048.2,ENST00000576149.1,ENST00000291074.5,ENST00000446250.2,ENST00000570650.1,ENST00000571805.1	chr17	526772:526914:530413:530556:531327:531471,	530414	530556	530427	530428	Frame_Shift_Ins	-	A	p.C321fs
STAD	TCGA-CD-A4MG-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698653	17698653	Frame_Shift_Del	C	-	p.D797fs
STAD	TCGA-CD-A4MG-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189626	75189627	Frame_Shift_Ins	-	A	p.I156fs
STAD	TCGA-CD-A4MG-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996513	45996513	Frame_Shift_Del	G	-	p.P313fs
STAD	TCGA-CD-A4MG-01	COL9A3	ENST00000343916.3,ENST00000452372.1,ENST00000477612.1,ENST00000489045.1	chr20	61452532:61452568:61452858:61452882:61453108:61453162,	61452859	61452882	61452877	61452878	Frame_Shift_Ins	-	C	p.G121fs
STAD	TCGA-CD-A4MH-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016750	1016760	Frame_Shift_Del	CACCAAGGAGG	-	p.T2014fs
STAD	TCGA-CD-A4MI-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823103	155823103	Frame_Shift_Del	A	-	p.S157fs
STAD	TCGA-CD-A4MI-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510827	169510828	Frame_Shift_Ins	-	G	p.P1167fs
STAD	TCGA-CD-A4MI-01	C2orf42	ENST00000264434.2,ENST00000420306.1	chr2	70396688:70396793:70402804:70402909:70406663:70406774,	70402805	70402909	70402811	70402812	Frame_Shift_Ins	-	T	p.R345fs
STAD	TCGA-CD-A4MI-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142241569:142241683:142242834:142243041:142253921:142254047,	142242835	142243041	142242921	142242922	Frame_Shift_Ins	-	C	p.E1356fs
STAD	TCGA-CD-A4MI-01	NMD3	ENST00000473909.1,ENST00000472947.1,ENST00000476237.1,ENST00000351193.2,ENST00000460503.1,ENST00000463518.1,ENST00000468606.1,ENST00000493066.1,ENST00000460469.1	chr3	160939781:160939845:160942717:160942852:160945034:160945131,	160942718	160942852	160942804	160942805	Frame_Shift_Ins	-	A	p.Q44fs
STAD	TCGA-CD-A4MI-01	PIGG	ENST00000310340.5,ENST00000383028.4,ENST00000296306.7,ENST00000453061.2,ENST00000504346.1	chr4	520827:521019:524224:524534:527606:527770,	524225	524534	524250	524251	Frame_Shift_Del	TA	-	p.V762fs
STAD	TCGA-CD-A4MI-01	LARP1B	ENST00000326639.6,ENST00000503725.1,ENST00000264584.5,ENST00000507259.1,ENST00000354456.3,ENST00000506199.1	chr4	129121748:129121820:129127582:129127692:129128410:129128538,	129127583	129127692	129127627	129127628	Frame_Shift_Ins	-	A	p.E785fs
STAD	TCGA-CD-A4MI-01	MAP3K1	ENST00000399503.3	chr5	56168651:56168832:56170858:56171137:56174806:56174928,	56170859	56171137	56170909	56170910	Frame_Shift_Del	GA	-	p.V579fs
STAD	TCGA-CD-A4MI-01	SLC13A4	ENST00000471405.1,ENST00000354042.4	chr7	135365988:135366448:135368871:135369009:135370269:135370431,	135368872	135369009	135368918	135368918	Frame_Shift_Del	G	-	p.P567fs
STAD	TCGA-CD-A4MI-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091523	35091523	Frame_Shift_Del	G	-	p.T788fs
STAD	TCGA-CD-A4MI-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-CD-A4MI-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873961	76873962	Frame_Shift_Ins	-	C	p.I539fs
STAD	TCGA-CD-A4MI-01	ACSM3	ENST00000440284.2,ENST00000562251.1,ENST00000289416.5,ENST00000563914.1,ENST00000450120.2	chr16	20793029:20793109:20796305:20796429:20797399:20797474,	20796306	20796429	20796371	20796371	Frame_Shift_Del	A	-	p.E391fs
STAD	TCGA-CD-A4MI-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-CD-A4MI-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-CD-A4MI-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.H997fs
STAD	TCGA-CD-A4MI-01	SLFN12	ENST00000452764.3	chr17	33747292:33747400:33749008:33750087:33759206:33759276,33747292:33747400:33749008:33750087:33759923:33760164,	33749009	33750087	33749957	33749957	Frame_Shift_Del	T	-	p.M31fs
STAD	TCGA-CD-A4MI-01	EZH1	ENST00000586089.1,ENST00000585893.1	chr17	40872455:40872467:40874812:40874933:40876322:40876442,40872455:40872467:40874812:40874933:40879652:40879781,	40874813	40874933	40874914	40874914	Frame_Shift_Del	A	-	p.L135fs
STAD	TCGA-CD-A4MJ-01	EPHB2	ENST00000544305.1,ENST00000374627.1,ENST00000400191.3,ENST00000465676.1,ENST00000374632.3,ENST00000374630.3	chr1	23189529:23189685:23191369:23191705:23208851:23208976,	23191370	23191705	23191384	23191385	Frame_Shift_Ins	-	C	p.A327fs
STAD	TCGA-CD-A4MJ-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823172	155823172	Frame_Shift_Del	T	-	p.M134fs
STAD	TCGA-CD-A4MJ-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-CD-A4MJ-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-CD-A4MJ-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-CD-A4MJ-01	SHISA4	ENST00000464117.1,ENST00000362011.6	chr1	201858690:201858744:201859581:201859715:201860528:201860696,	201859582	201859715	201859594	201859594	Frame_Shift_Del	A	-	p.I86fs
STAD	TCGA-CD-A4MJ-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263965	33263966	Frame_Shift_Ins	-	C	p.G203fs
STAD	TCGA-CD-A4MJ-01	SNRPC	ENST00000374018.1,ENST00000474635.1,ENST00000374017.3,ENST00000244520.5	chr6	34730371:34730480:34735684:34735774:34738067:34738172,	34735685	34735774	34735762	34735763	Frame_Shift_Ins	-	C	p.P79fs
STAD	TCGA-CD-A4MJ-01	SNTB1	ENST00000517992.1,ENST00000519177.1,ENST00000395601.3	chr8	121644849:121644891:121705931:121706148:121823512:121823803,	121705932	121706148	121706031	121706032	Frame_Shift_Ins	-	G	p.P230fs
STAD	TCGA-CD-A4MJ-01	ASS1	ENST00000372394.1,ENST00000467695.1,ENST00000372393.3,ENST00000422569.1,ENST00000352480.5	chr9	133333943:133333976:133339497:133339554:133342111:133342186,	133339498	133339554	133339541	133339542	Frame_Shift_Ins	-	C	p.A212fs
STAD	TCGA-CD-A4MJ-01	CCPG1	ENST00000442196.3	chr15	55648509:55648607:55651736:55653142:55657385:55657474,	55651737	55653142	55651780	55651781	Frame_Shift_Ins	-	TA	p.R731fs
STAD	TCGA-CD-A4MJ-01	GGA3	ENST00000582717.1,ENST00000538886.1,ENST00000245541.6,ENST00000537584.2,ENST00000582486.1,ENST00000580799.1,ENST00000582200.1,ENST00000578348.1,ENST00000351904.7	chr17	73238969:73238992:73239143:73239247:73239527:73239651,	73239144	73239247	73239175	73239175	Frame_Shift_Del	T	-	p.N166fs
STAD	TCGA-CD-A4MJ-01	GGA3	ENST00000584243.1	chr17	73238969:73238992:73239143:73239339:73239527:73239651,	73239144	73239339	73239175	73239175	Frame_Shift_Del	T	-	p.N166fs
STAD	TCGA-CD-A4MJ-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-CD-A4MJ-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-CG-4305-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836080	35836081	Frame_Shift_Ins	-	A	p.C344fs
STAD	TCGA-CG-4305-01	STK40	ENST00000473733.1,ENST00000359297.2,ENST00000460417.1,ENST00000373132.3,ENST00000373129.3,ENST00000482458.1,ENST00000373130.3	chr1	36820889:36821034:36823839:36823983:36824337:36824423,	36823840	36823983	36823959	36823960	Frame_Shift_Ins	-	C	p.D75fs
STAD	TCGA-CG-4305-01	CCDC30	ENST00000509712.1,ENST00000477155.1	chr1	43000559:43000660:43002146:43002272:43011080:43011250,	43002147	43002272	43002166	43002166	Frame_Shift_Del	A	-	p.E4fs
STAD	TCGA-CG-4305-01	AUP1	ENST00000425118.1,ENST00000377526.3	chr2	74755543:74755616:74755877:74756062:74756258:74756409,	74755878	74756062	74755993	74755993	Frame_Shift_Del	C	-	p.E46fs
STAD	TCGA-CG-4305-01	AUP1	ENST00000463900.1,ENST00000466894.1	chr2	74755543:74755616:74755877:74756409:74756488:74756626,	74755878	74756409	74755993	74755993	Frame_Shift_Del	C	-	p.E46fs
STAD	TCGA-CG-4305-01	LRRFIP2	ENST00000336686.4,ENST00000421307.1	chr3	37107300:37107433:37114280:37114373:37116514:37116607,37107714:37107816:37114280:37114373:37116514:37116607,	37114281	37114373	37114286	37114287	Frame_Shift_Ins	-	T	p.I487fs
STAD	TCGA-CG-4305-01	SKIL	ENST00000259119.4,ENST00000426052.2,ENST00000458537.3	chr3	170099063:170099129:170102320:170102553:170108010:170108252,	170102321	170102553	170102467	170102468	Frame_Shift_Ins	-	A	p.Q448fs
STAD	TCGA-CG-4305-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984684	123984685	Frame_Shift_Ins	-	C	p.A465fs
STAD	TCGA-CG-4305-01	MED23	ENST00000354577.4,ENST00000368068.3,ENST00000540546.1,ENST00000368053.4,ENST00000539158.1,ENST00000403834.3,ENST00000368060.3,ENST00000368058.1	chr6	131927618:131927764:131929067:131929211:131931185:131931227,	131929068	131929211	131929129	131929130	Frame_Shift_Ins	-	T	p.N387fs
STAD	TCGA-CG-4305-01	PDE1C	ENST00000396193.1	chr7	31920461:31920473:32209396:32209568:32249100:32249151,	32209397	32209568	32209466	32209467	Frame_Shift_Ins	-	G	p.P80fs
STAD	TCGA-CG-4305-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
STAD	TCGA-CG-4305-01	CBLL1	ENST00000432748.1,ENST00000440859.3,ENST00000222597.2,ENST00000420796.1	chr7	107394339:107394423:107395862:107395936:107398587:107398625,	107395863	107395936	107395909	107395909	Frame_Shift_Del	A	-	p.E138fs
STAD	TCGA-CG-4305-01	LAMB1	ENST00000472714.1,ENST00000393561.1,ENST00000222399.6	chr7	107564262:107564532:107564674:107564834:107566627:107566804,	107564675	107564834	107564774	107564774	Frame_Shift_Del	T	-	p.T1733fs
STAD	TCGA-CG-4305-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95850721:95850846:95853718:95853819:95854574:95854716,	95853719	95853819	95853732	95853733	Frame_Shift_Ins	-	T	p.I344fs
STAD	TCGA-CG-4305-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830828	22830828	Frame_Shift_Del	G	-	p.P314fs
STAD	TCGA-CG-4305-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000490015.1,ENST00000376087.4	chr10	27328893:27329107:27332354:27332496:27333085:27333119,	27332355	27332496	27332489	27332489	Frame_Shift_Del	T	-	p.N676fs
STAD	TCGA-CG-4305-01	OSBPL5	ENST00000471998.2,ENST00000542243.1,ENST00000525498.1,ENST00000534491.1,ENST00000389989.3,ENST00000534454.1,ENST00000263650.7,ENST00000348039.5	chr11	3114756:3114893:3114975:3115065:3115466:3115564,	3114976	3115065	3115052	3115052	Frame_Shift_Del	C	-	p.G578fs
STAD	TCGA-CG-4305-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410381	19410381	Frame_Shift_Del	A	-	p.S149fs
STAD	TCGA-CG-4305-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262564	25262565	Frame_Shift_Ins	-	G	p.V112fs
STAD	TCGA-CG-4305-01	USPL1	ENST00000255304.4	chr13	31204971:31205611:31211880:31211994:31216764:31216894,	31211881	31211994	31211892	31211893	Frame_Shift_Ins	-	A	p.C293fs
STAD	TCGA-CG-4305-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331226	69331226	Frame_Shift_Del	T	-	p.P467fs
STAD	TCGA-CG-4305-01	ZFAND6	ENST00000559775.1,ENST00000559157.1,ENST00000261749.6,ENST00000558087.1,ENST00000561060.1,ENST00000558494.1,ENST00000559835.1	chr15	80415041:80415142:80423521:80423635:80429821:80429902,	80423522	80423635	80423588	80423589	Frame_Shift_Ins	-	A	p.Q144fs
STAD	TCGA-CG-4305-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736372	Frame_Shift_Ins	-	C	p.Q1875fs
STAD	TCGA-CG-4305-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P596fs
STAD	TCGA-CG-4305-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863768	47863768	Frame_Shift_Del	C	-	p.S3249fs
STAD	TCGA-CG-4305-01	DEPDC5	ENST00000266091.3,ENST00000535622.1,ENST00000382111.2,ENST00000479261.1,ENST00000433147.1,ENST00000539165.1,ENST00000400249.2,ENST00000382112.3,ENST00000400246.1,ENST00000400248.2	chr22	32270263:32270391:32272142:32272251:32275510:32275682,	32272143	32272251	32272206	32272206	Frame_Shift_Del	G	-	p.Y1253fs
STAD	TCGA-CG-4306-01	HSPG2	ENST00000374695.3	chr1	22155327:22155572:22155875:22156097:22156485:22156584,	22155876	22156097	22155955	22155955	Frame_Shift_Del	C	-	p.K3973fs
STAD	TCGA-CG-4306-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530507	Frame_Shift_Ins	-	GG	p.F777fs
STAD	TCGA-CG-4306-01	LAMC2	ENST00000264144.4,ENST00000493293.1	chr1	183201786:183201992:183203501:183203581:183204709:183204865,	183203502	183203581	183203528	183203529	Frame_Shift_Ins	-	G	p.V749fs
STAD	TCGA-CG-4306-01	NEK7	ENST00000367385.4,ENST00000538004.1,ENST00000391974.3	chr1	198201682:198201767:198222169:198222310:198231704:198231753,	198222170	198222310	198222298	198222298	Frame_Shift_Del	A	-	p.L62fs
STAD	TCGA-CG-4306-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548597	212548598	Frame_Shift_Ins	-	T	p.S338fs
STAD	TCGA-CG-4306-01	MCEE	ENST00000244217.5	chr2	71336943:71337252:71351335:71351673:71357309:71357367,	71351336	71351673	71351665	71351666	Frame_Shift_Ins	-	A	p.S17fs
STAD	TCGA-CG-4306-01	BARD1	ENST00000449967.2,ENST00000455743.1	chr2	215633955:215634036:215645283:215646233:215657020:215657169,215633955:215634036:215645283:215646233:215661784:215661841,	215645284	215646233	215645975	215645976	Frame_Shift_Ins	-	T	p.K208fs
STAD	TCGA-CG-4306-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48621467:48621494:48621730:48621808:48621917:48621953,	48621731	48621808	48621801	48621801	Frame_Shift_Del	G	-	p.P1376fs
STAD	TCGA-CG-4306-01	ALDH1L1	ENST00000472186.1,ENST00000273450.3,ENST00000490367.1,ENST00000393431.2,ENST00000393434.2,ENST00000488356.1,ENST00000460368.1	chr3	125876242:125876351:125877247:125877482:125879695:125879845,	125877248	125877482	125877315	125877315	Frame_Shift_Del	G	-	p.R99fs
STAD	TCGA-CG-4306-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155661	106155661	Frame_Shift_Del	A	-	p.G208fs
STAD	TCGA-CG-4306-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147806940	147806941	Frame_Shift_Ins	-	A	p.K694fs
STAD	TCGA-CG-4306-01	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147806940	147806941	Frame_Shift_Ins	-	A	p.K694fs
STAD	TCGA-CG-4306-01	NDST1	ENST00000261797.6,ENST00000523767.1	chr5	149915261:149915447:149918789:149918918:149919643:149919826,	149918790	149918918	149918819	149918820	Frame_Shift_Ins	-	CA	p.F489fs
STAD	TCGA-CG-4306-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150923357	150923358	Frame_Shift_Ins	-	T	p.K2444fs
STAD	TCGA-CG-4306-01	COL12A1	ENST00000425443.2	chr6	75794041:75795081:75797292:75797463:75798821:75798890,	75797293	75797463	75797397	75797398	Frame_Shift_Ins	-	G	p.P3026fs
STAD	TCGA-CG-4306-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086414	144086415	Frame_Shift_Ins	-	A	p.S237fs
STAD	TCGA-CG-4306-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167474	Frame_Shift_Ins	-	A	p.L72fs
STAD	TCGA-CG-4306-01	TMEM38B	ENST00000374688.1,ENST00000374692.3,ENST00000435034.1	chr9	108467955:108468034:108483817:108484002:108484814:108484902,	108483818	108484002	108483828	108483829	Frame_Shift_Ins	-	T	p.T93fs
STAD	TCGA-CG-4306-01	NCS1	ENST00000458469.1,ENST00000372398.3	chr9	132963236:132963261:132980110:132980249:132982003:132982082,	132980111	132980249	132980142	132980143	Frame_Shift_Ins	-	G	p.S40fs
STAD	TCGA-CG-4306-01	SYT15	ENST00000374328.3,ENST00000503753.1,ENST00000374325.3	chr10	46961933:46962112:46963839:46964019:46965001:46965122,46959943:46960018:46963839:46964019:46965001:46965122,	46963840	46964019	46964014	46964015	Frame_Shift_Del	AC	-	p.F317fs
STAD	TCGA-CG-4306-01	INPP5F	ENST00000361976.2,ENST00000369083.3	chr10	121551380:121551548:121551668:121551725:121556226:121556425,	121551669	121551725	121551681	121551682	Frame_Shift_Ins	-	T	p.R208fs
STAD	TCGA-CG-4306-01	ATP2B1	ENST00000359142.3,ENST00000261173.2,ENST00000428670.3,ENST00000348959.3	chr12	90028554:90028680:90028773:90029028:90035934:90036132,	90028774	90029028	90028898	90028899	Frame_Shift_Ins	-	T	p.K179fs
STAD	TCGA-CG-4306-01	AKAP13	ENST00000394518.2,ENST00000560579.1,ENST00000361243.2,ENST00000394510.2	chr15	86278222:86278381:86278790:86278861:86279320:86279365,	86278791	86278861	86278855	86278855	Frame_Shift_Del	A	-	p.L2502fs
STAD	TCGA-CG-4306-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579802	2579802	Frame_Shift_Del	A	-	p.T301fs
STAD	TCGA-CG-4306-01	ULK2	ENST00000575432.1,ENST00000361658.2,ENST00000395544.4	chr17	19685273:19685380:19687009:19687218:19689249:19689318,	19687010	19687218	19687070	19687071	Frame_Shift_Ins	-	G	p.P800fs
STAD	TCGA-CG-4306-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5904507	5904508	Frame_Shift_Ins	-	A	p.E572fs
STAD	TCGA-CG-4306-01	TAF4	ENST00000252996.4,ENST00000436129.2	chr20	60574038:60574164:60575179:60575310:60575607:60575777,	60575180	60575310	60575303	60575303	Frame_Shift_Del	T	-	p.H889fs
STAD	TCGA-CG-4437-01	LAD1	ENST00000367313.3,ENST00000391967.2	chr1	201353919:201353963:201354828:201354933:201355462:201355693,	201354829	201354933	201354882	201354918	Frame_Shift_Del	GCTGTGTGGGTGAGGACATATCTGCCTCTTCCTCCTT	-	p.K348fs
STAD	TCGA-CG-4437-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439202	52439220	Frame_Shift_Del	TGAACCCCATTGAGGCTGC	-	p.S341fs
STAD	TCGA-CG-4437-01	CNOT4	ENST00000361528.4,ENST00000315544.5,ENST00000428680.2,ENST00000356162.4,ENST00000451834.1,ENST00000423368.2	chr7	135107062:135107102:135122905:135123171:135194636:135194686,	135122906	135123171	135122926	135122932	Frame_Shift_Del	GCCCATT	-	p.N50fs
STAD	TCGA-CG-4437-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000523756.1,ENST00000522523.1,ENST00000220616.4,ENST00000519178.1	chr8	133995594:133995657:134024145:134024280:134025844:134025928,	134024146	134024280	134024148	134024175	Frame_Shift_Del	TCTCTGGACTCGTGGCAGTCCCTGGCCC	-	p.V2088fs
STAD	TCGA-CG-4437-01	LRIG3	ENST00000379141.4,ENST00000552646.1,ENST00000433272.2,ENST00000320743.3	chr12	59268211:59268355:59270226:59270385:59271181:59271276,	59270227	59270385	59270290	59270296	Frame_Shift_Del	TTCCACT	-	p.S876fs
STAD	TCGA-CG-4437-01	TM9SF2	ENST00000463709.1,ENST00000376387.4	chr13	100172289:100172383:100181720:100181848:100188861:100188991,	100181721	100181848	100181797	100181816	Frame_Shift_Del	AAAAGTTAGAATTCTTGAAA	-	p.Q137fs
STAD	TCGA-CG-4440-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36759451:36759536:36762183:36762371:36766486:36766685,	36762184	36762371	36762332	36762333	Frame_Shift_Ins	-	A	p.E755fs
STAD	TCGA-CG-4440-01	TACC1	ENST00000522904.1,ENST00000520973.1,ENST00000518415.1,ENST00000520615.1,ENST00000317827.4,ENST00000443286.2,ENST00000520340.1	chr8	38646221:38646337:38677039:38678153:38682825:38682886,	38677040	38678153	38677319	38677320	Frame_Shift_Ins	-	GCCCGCCAGAC	p.S186fs
STAD	TCGA-CG-4441-01	RIOK3	ENST00000581339.1,ENST00000581302.1	chr18	21054911:21055071:21056969:21057232:21059280:21059388,	21056970	21057232	21057017	21057018	Frame_Shift_Ins	-	CAGTGAG	p.L407fs
STAD	TCGA-CG-4442-01	AJAP1	ENST00000378190.3,ENST00000378191.4	chr1	4771959:4772759:4829912:4830000:4832339:4832585,	4829913	4830000	4829992	4829993	Frame_Shift_Ins	-	A	p.L303fs
STAD	TCGA-CG-4442-01	EHBP1	ENST00000431489.1,ENST00000263991.5,ENST00000405289.1,ENST00000405015.3,ENST00000354487.3	chr2	63170936:63170985:63175394:63176297:63182651:63182795,	63175395	63176297	63176205	63176206	Frame_Shift_Ins	-	A	p.K776fs
STAD	TCGA-CG-4442-01	AFTPH	ENST00000422803.1,ENST00000498706.1,ENST00000238855.7	chr2	64751660:64751746:64778576:64780543:64794695:64794847,	64778577	64780543	64779844	64779844	Frame_Shift_Del	A	-	p.V412fs
STAD	TCGA-CG-4442-01	ACTG2	ENST00000429756.1	chr2	74120134:74120178:74128402:74128607:74135799:74135910,	74128403	74128607	74128518	74128519	Frame_Shift_Ins	-	C	p.A27fs
STAD	TCGA-CG-4442-01	ACTG2	ENST00000438902.2,ENST00000409918.1,ENST00000345517.3,ENST00000442912.1,ENST00000473016.1	chr2	74120134:74120178:74128402:74128564:74135799:74135910,74120134:74120178:74128402:74128564:74129486:74129615,	74128403	74128564	74128518	74128519	Frame_Shift_Ins	-	C	p.A27fs
STAD	TCGA-CG-4442-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232795	99232795	Frame_Shift_Del	T	-	p.L193fs
STAD	TCGA-CG-4442-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005145	50005145	Frame_Shift_Del	G	-	p.R96fs
STAD	TCGA-CG-4442-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005145	50005145	Frame_Shift_Del	G	-	p.R96fs
STAD	TCGA-CG-4442-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543931	Frame_Shift_Ins	-	G	p.S797fs
STAD	TCGA-CG-4442-01	DNAH5	ENST00000265104.4	chr5	13841800:13842013:13844945:13845102:13850760:13850924,	13844946	13845102	13845087	13845088	Frame_Shift_Ins	-	T	p.K1710fs
STAD	TCGA-CG-4442-01	CENPH	ENST00000514753.1,ENST00000283006.2	chr5	68490473:68490522:68491543:68491618:68498332:68498396,68490473:68490522:68491543:68491618:68492879:68492936,	68491544	68491618	68491598	68491599	Frame_Shift_Ins	-	A	p.I98fs
STAD	TCGA-CG-4442-01	SKIV2L	ENST00000375394.2,ENST00000465703.1,ENST00000474839.1,ENST00000461915.1,ENST00000544581.1	chr6	31934604:31934623:31934780:31934918:31935049:31935154,	31934781	31934918	31934881	31934881	Frame_Shift_Del	G	-	p.W814fs
STAD	TCGA-CG-4442-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1,ENST00000417852.1	chr7	716865:716957:720192:720363:750965:751164,	720193	720363	720281	720281	Frame_Shift_Del	G	-	p.P87fs
STAD	TCGA-CG-4442-01	POM121	ENST00000446813.1,ENST00000257622.4,ENST00000434423.2,ENST00000395270.1,ENST00000358357.3	chr7	72396799:72397015:72397339:72397501:72398922:72399003,	72397340	72397501	72397427	72397428	Frame_Shift_Ins	-	C	p.L316fs
STAD	TCGA-CG-4442-01	ABCB1	ENST00000543898.1,ENST00000265724.3,ENST00000482527.1	chr7	87175264:87175340:87178663:87178834:87179166:87179370,	87178664	87178834	87178807	87178808	Frame_Shift_Del	CT	-	p.G528fs
STAD	TCGA-CG-4442-01	LAMB1	ENST00000393561.1,ENST00000393560.1,ENST00000222399.6	chr7	107635331:107635405:107638801:107638937:107642002:107642178,	107638802	107638937	107638926	107638926	Frame_Shift_Del	T	-	p.C100fs
STAD	TCGA-CG-4442-01	CHCHD7	ENST00000523975.1,ENST00000396723.5,ENST00000355315.3,ENST00000303759.3,ENST00000518944.1	chr8	57127156:57127226:57128991:57129090:57129889:57129971,	57128992	57129090	57129070	57129070	Frame_Shift_Del	A	-	p.Y69fs
STAD	TCGA-CG-4442-01	CHCHD7	ENST00000522166.1,ENST00000521831.1,ENST00000518801.1,ENST00000519367.1	chr8	57127156:57127226:57128947:57129090:57129889:57129971,	57128948	57129090	57129070	57129070	Frame_Shift_Del	A	-	p.Y69fs
STAD	TCGA-CG-4442-01	UBAP2	ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1	chr9	33944512:33944637:33948371:33948585:33953282:33953472,	33948372	33948585	33948391	33948397	Frame_Shift_Del	GGACTGG	-	p.Q416fs
STAD	TCGA-CG-4442-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.G23fs
STAD	TCGA-CG-4442-01	YIF1A	ENST00000471387.2	chr11	66053171:66053229:66055068:66055147:66056425:66056478,	66055069	66055147	66055105	66055105	Frame_Shift_Del	G	-	p.R131fs
STAD	TCGA-CG-4442-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770653	Frame_Shift_Ins	-	G	p.P1127fs
STAD	TCGA-CG-4442-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577802	14577803	Frame_Shift_Ins	-	A	p.E318fs
STAD	TCGA-CG-4442-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921402	Frame_Shift_Ins	-	C	p.R731fs
STAD	TCGA-CG-4442-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921733	Frame_Shift_Ins	-	G	p.P779fs
STAD	TCGA-CG-4442-01	EML5	ENST00000553973.1,ENST00000553526.1,ENST00000380664.5,ENST00000352093.5,ENST00000554922.1	chr14	89082161:89082198:89082485:89082586:89083069:89083223,	89082486	89082586	89082574	89082575	Frame_Shift_Ins	-	T	p.R1937fs
STAD	TCGA-CG-4442-01	HERC2	ENST00000261609.7	chr15	28474605:28474742:28474819:28474993:28475512:28475646,	28474820	28474993	28474843	28474844	Frame_Shift_Ins	-	T	p.M1654fs
STAD	TCGA-CG-4442-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862229	4862230	Frame_Shift_Ins	-	C	p.G380fs
STAD	TCGA-CG-4442-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000545570.1,ENST00000395532.4,ENST00000359285.5,ENST00000322610.8	chr16	28880597:28880704:28883100:28883304:28883510:28883722,	28883101	28883304	28883208	28883209	Frame_Shift_Ins	-	C	p.L472fs
STAD	TCGA-CG-4442-01	UPK1A	ENST00000222275.2	chr19	36164372:36164447:36166741:36166921:36168713:36168759,	36166742	36166921	36166867	36166868	Frame_Shift_Ins	-	C	p.I198fs
STAD	TCGA-CG-4442-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42791961:42792127:42793039:42793242:42793332:42793379,	42793040	42793242	42793162	42793163	Frame_Shift_Ins	-	C	p.R351fs
STAD	TCGA-CG-4442-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188444	47188445	Frame_Shift_Ins	-	C	p.H30fs
STAD	TCGA-CG-4444-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812017	59812018	Frame_Shift_Ins	-	G	p.V137fs
STAD	TCGA-CG-4449-01	BIRC6	ENST00000421745.2	chr2	32670588:32670736:32673862:32673996:32678875:32679010,	32673863	32673996	32673876	32673877	Frame_Shift_Ins	-	A	p.Y1499fs
STAD	TCGA-CG-4449-01	ATP10B	ENST00000521033.1,ENST00000326831.3,ENST00000517802.1,ENST00000327245.5	chr5	160063188:160063316:160067467:160067599:160071144:160071251,	160067468	160067599	160067472	160067473	Frame_Shift_Ins	-	A	p.A332fs
STAD	TCGA-CG-4455-01	SERPINB7	ENST00000425392.1,ENST00000336429.2,ENST00000431370.1,ENST00000398019.2,ENST00000447428.1,ENST00000546027.1	chr18	61449588:61449774:61460394:61460511:61463499:61463546,61459626:61459677:61460394:61460511:61463499:61463546,	61460395	61460511	61460423	61460424	Frame_Shift_Ins	-	T	p.V83fs
STAD	TCGA-CG-4465-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.K131fs
STAD	TCGA-CG-4465-01	CCDC66	ENST00000422222.1,ENST00000442522.2,ENST00000436465.2,ENST00000471681.1,ENST00000394672.3,ENST00000326595.7,ENST00000538560.1	chr3	56597711:56598153:56600621:56600787:56600977:56601081,	56600622	56600787	56600690	56600691	Frame_Shift_Ins	-	A	p.F204fs
STAD	TCGA-CG-4465-01	CCDC66	ENST00000434467.1,ENST00000341455.6	chr3	56597711:56598153:56600621:56600768:56600977:56601081,	56600622	56600768	56600690	56600691	Frame_Shift_Ins	-	A	p.F204fs
STAD	TCGA-CG-4465-01	KIF13A	ENST00000378843.2,ENST00000502297.1,ENST00000514714.1,ENST00000378814.5	chr6	17785823:17785872:17788006:17788106:17794802:17794928,17785823:17785872:17788006:17788106:17794479:17794626,	17788007	17788106	17788023	17788024	Frame_Shift_Ins	-	T	p.K1115fs
STAD	TCGA-CG-4465-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855927	Frame_Shift_Del	G	-	p.R297fs
STAD	TCGA-CG-4465-01	SLCO5A1	ENST00000524945.1,ENST00000260126.4	chr8	70594418:70594578:70617265:70617464:70650274:70650439,	70617266	70617464	70617403	70617403	Frame_Shift_Del	T	-	p.L496fs
STAD	TCGA-CG-4465-01	SDSL	ENST00000553248.1,ENST00000403593.4,ENST00000345635.4	chr12	113866224:113866264:113866964:113867104:113871938:113872027,	113866965	113867104	113867032	113867033	Frame_Shift_Ins	-	C	p.L94fs
STAD	TCGA-CG-4465-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42053936:42054048:42054326:42054560:42057083:42057260,	42054327	42054560	42054516	42054517	Frame_Shift_Ins	-	G	p.R2567fs
STAD	TCGA-CG-4465-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-CG-4465-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-CG-4465-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
STAD	TCGA-CG-4465-01	CD22	ENST00000270311.6,ENST00000598815.1,ENST00000419549.2,ENST00000085219.5,ENST00000536635.2,ENST00000594250.1,ENST00000341773.6,ENST00000544992.2,ENST00000601769.1	chr19	35832003:35832041:35832245:35832509:35832604:35832627,	35832246	35832509	35832249	35832250	Frame_Shift_Ins	-	C	p.A504fs
STAD	TCGA-CG-4465-01	ALAS2	ENST00000463868.1,ENST00000493869.1,ENST00000330807.5,ENST00000335854.4	chrX	55051150:55051273:55052252:55052448:55057374:55057410,	55052253	55052448	55052384	55052384	Frame_Shift_Del	C	-	p.G17fs
STAD	TCGA-CG-4466-01	CAPN2	ENST00000433674.2,ENST00000295006.5	chr1	223933007:223933141:223934698:223934867:223936740:223936824,	223934699	223934867	223934726	223934727	Frame_Shift_Del	AG	-	p.S196fs
STAD	TCGA-CG-4469-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000470384.1,ENST00000490203.1,ENST00000446188.1,ENST00000367284.5	chr1	201981772:201981887:201982074:201982164:201982309:201982325,	201982075	201982164	201982112	201982113	Frame_Shift_Ins	-	CGGTG	p.S212fs
STAD	TCGA-CG-4474-01	THSD1	ENST00000258613.4	chr13	52960162:52960321:52971366:52972329:52976677:52976816,	52971367	52972329	52971746	52971747	Frame_Shift_Del	AT	-	p.Y214fs
STAD	TCGA-CG-4476-01	BIRC6	ENST00000421745.2	chr2	32737999:32738221:32740056:32740837:32743320:32743464,	32740057	32740837	32740737	32740740	Frame_Shift_Del	GACT	-	p.G3750fs
STAD	TCGA-CG-4476-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48028272	48028273	Frame_Shift_Ins	-	TGTAG	p.A1050fs
STAD	TCGA-CG-4476-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48028272	48028273	Frame_Shift_Ins	-	TGTAG	p.A1050fs
STAD	TCGA-CG-4476-01	HEATR5A	ENST00000538864.2,ENST00000439727.1,ENST00000543095.2,ENST00000439348.1,ENST00000389961.3	chr14	31790704:31790886:31792770:31793010:31795368:31795548,	31792771	31793010	31792845	31792845	Frame_Shift_Del	T	-	p.N1238fs
STAD	TCGA-CG-4477-01	LZIC	ENST00000377213.1,ENST00000541052.1,ENST00000377223.1,ENST00000400903.2	chr1	9992860:9992956:9994819:9994918:9995549:9995678,	9994820	9994918	9994876	9994876	Frame_Shift_Del	C	-	p.V115fs
STAD	TCGA-CG-4477-01	ELF3	ENST00000359651.3,ENST00000367283.3,ENST00000446188.1,ENST00000367284.5	chr1	201981291:201981306:201981471:201981564:201981767:201981887,	201981472	201981564	201981536	201981537	Frame_Shift_Ins	-	C	p.F150fs
STAD	TCGA-CG-4477-01	POLR1B	ENST00000541869.1,ENST00000409894.3,ENST00000458012.2,ENST00000537335.1,ENST00000333990.6,ENST00000448770.1,ENST00000263331.5,ENST00000417433.2	chr2	113330218:113330335:113331138:113331392:113332423:113332666,	113331139	113331392	113331235	113331236	Frame_Shift_Ins	-	A	p.D789fs
STAD	TCGA-CG-4477-01	ITGA9	ENST00000264741.5	chr3	37818882:37819008:37821392:37821512:37826467:37826569,	37821393	37821512	37821477	37821478	Frame_Shift_Ins	-	ATTT	p.D917fs
STAD	TCGA-CG-4477-01	TMCO6	ENST00000252100.6,ENST00000510336.1,ENST00000514449.1,ENST00000394671.3	chr5	140021249:140021365:140021454:140021638:140021899:140021998,	140021455	140021638	140021541	140021542	Frame_Shift_Ins	-	AGCT	p.E134fs
STAD	TCGA-CG-4477-01	RBM27	ENST00000265271.5	chr5	145650516:145650621:145651045:145651237:145664184:145664295,	145651046	145651237	145651187	145651188	Frame_Shift_Ins	-	GTTGGAG	p.T979fs
STAD	TCGA-CG-4477-01	AGER	ENST00000438221.2,ENST00000375065.5,ENST00000375076.4,ENST00000488669.1,ENST00000375070.3,ENST00000375055.2,ENST00000473619.1,ENST00000484849.1	chr6	32149382:32149409:32150023:32150165:32150344:32150455,	32150024	32150165	32150160	32150161	Frame_Shift_Ins	-	CA	p.V276fs
STAD	TCGA-CG-4477-01	HKDC1	ENST00000395086.2	chr10	70980058:70980254:70986962:70987125:70992519:70992668,	70986963	70987125	70986988	70986989	Frame_Shift_Ins	-	GGCT	p.R30fs
STAD	TCGA-CG-4477-01	F10	ENST00000477269.1,ENST00000409306.1,ENST00000375559.3,ENST00000375551.3	chr13	113793670:113793784:113795232:113795364:113798164:113798409,	113795233	113795364	113795276	113795277	Frame_Shift_Del	GT	-	p.Q138fs
STAD	TCGA-CG-4477-01	F10	ENST00000410083.2	chr13	113793670:113793784:113794880:113795364:113798164:113798409,	113794881	113795364	113795276	113795277	Frame_Shift_Del	GT	-	p.Q138fs
STAD	TCGA-CG-4477-01	MGA	ENST00000563576.1	chr15	41952609:41952723:41961025:41962156:41988272:41988781,41913733:41913787:41961025:41962156:41988272:41988781,	41961026	41962156	41961472	41961473	Frame_Shift_Ins	-	TATC	p.I127fs
STAD	TCGA-CG-4477-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000514944.1,ENST00000413465.2,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7577571:7577608:7578176:7578289:7578370:7578437,	7578177	7578289	7578183	7578187	Frame_Shift_Del	CGGCT	-	p.E221fs
STAD	TCGA-CG-4477-01	CLTC	ENST00000269122.3,ENST00000393043.1,ENST00000466513.1	chr17	57743463:57743601:57743840:57744005:57744157:57744338,	57743841	57744005	57743978	57743978	Frame_Shift_Del	G	-	p.V644fs
STAD	TCGA-CG-4477-01	G6PD	ENST00000440967.1,ENST00000439227.1	chrX	153762250:153762375:153762552:153762714:153763382:153763600,	153762553	153762714	153762645	153762652	Frame_Shift_Del	GGACAGCC	-	p.R182fs
STAD	TCGA-CG-4477-01	G6PD	ENST00000393562.2,ENST00000393564.2,ENST00000433845.1,ENST00000369620.2	chrX	153762250:153762375:153762552:153762711:153763382:153763600,	153762553	153762711	153762645	153762652	Frame_Shift_Del	GGACAGCC	-	p.R182fs
STAD	TCGA-CG-5717-01	CTNNA1	ENST00000540387.1,ENST00000518825.1,ENST00000521368.1,ENST00000521387.1,ENST00000355078.5,ENST00000521724.1,ENST00000302763.7	chr5	138260944:138261096:138264934:138265045:138266161:138266198,	138264935	138265045	138264953	138264966	Frame_Shift_Del	GACTCTGACTTTGA	-	p.D639fs
STAD	TCGA-CG-5718-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134660	161134661	Frame_Shift_Ins	-	A	p.I473fs
STAD	TCGA-CG-5721-01	NADK	ENST00000378625.1,ENST00000342348.5,ENST00000344463.4,ENST00000341426.5,ENST00000341991.3	chr1	1685005:1685088:1685489:1685647:1685722:1685822,	1685490	1685647	1685540	1685541	Frame_Shift_Ins	-	G	p.H351fs
STAD	TCGA-CG-5721-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
STAD	TCGA-CG-5721-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836080	35836080	Frame_Shift_Del	A	-	p.C344fs
STAD	TCGA-CG-5721-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-CG-5721-01	CD58	ENST00000464088.1,ENST00000369487.3,ENST00000457047.2,ENST00000369489.5	chr1	117064527:117064605:117078586:117078850:117086932:117087212,	117078587	117078850	117078662	117078663	Frame_Shift_Ins	-	T	p.I185fs
STAD	TCGA-CG-5721-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315787	208315788	Frame_Shift_Ins	-	G	p.H465fs
STAD	TCGA-CG-5721-01	CEP68	ENST00000377990.2,ENST00000260569.4	chr2	65301415:65301538:65305001:65305098:65309669:65309811,	65305002	65305098	65305008	65305011	Frame_Shift_Del	AAGA	-	p.F671fs
STAD	TCGA-CG-5721-01	DCAF17	ENST00000539783.1	chr2	172333369:172333460:172334496:172334580:172336547:172336703,172325486:172325540:172334496:172334580:172336547:172336703,	172334497	172334580	172334538	172334538	Frame_Shift_Del	A	-	p.V408fs
STAD	TCGA-CG-5721-01	DNAJC10	ENST00000491074.1,ENST00000264065.7,ENST00000537515.1,ENST00000459930.1,ENST00000444005.1	chr2	183594574:183594668:183595756:183595834:183597225:183597269,	183595757	183595834	183595815	183595815	Frame_Shift_Del	T	-	p.T262fs
STAD	TCGA-CG-5721-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000459659.1,ENST00000484478.1	chr3	33863526:33863574:33866678:33866832:33867971:33868031,	33866679	33866832	33866811	33866812	Frame_Shift_Ins	-	T	p.V198fs
STAD	TCGA-CG-5721-01	HGD	ENST00000492108.1	chr3	120347212:120347376:120351993:120352175:120357301:120357428,120347212:120347376:120351993:120352175:120360435:120360540,	120351994	120352175	120352071	120352072	Frame_Shift_Ins	-	G	p.H371fs
STAD	TCGA-CG-5721-01	SLC38A9	ENST00000396865.2,ENST00000515159.1,ENST00000524030.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54941616:54941723:54948356:54948551:54952542:54952602,54945037:54945142:54948356:54948551:54952542:54952602,	54948357	54948551	54948375	54948375	Frame_Shift_Del	A	-	p.S312fs
STAD	TCGA-CG-5721-01	IRF1	ENST00000405885.2,ENST00000245414.4	chr5	131821358:131821408:131821942:131822065:131822248:131822331,	131821943	131822065	131822004	131822005	Frame_Shift_Del	CA	-	p.V202fs
STAD	TCGA-CG-5721-01	HNRNPH1	ENST00000521116.1	chr5	179048371:179048398:179050037:179050165:179061065:179061158,	179050038	179050165	179050041	179050041	Frame_Shift_Del	A	-	p.S32fs
STAD	TCGA-CG-5721-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374580	180374580	Frame_Shift_Del	T	-	p.L247fs
STAD	TCGA-CG-5721-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374580	180374580	Frame_Shift_Del	T	-	p.L247fs
STAD	TCGA-CG-5721-01	CDYL	ENST00000472453.1,ENST00000328908.5,ENST00000449732.2,ENST00000343762.5,ENST00000397588.3	chr6	4937798:4937971:4943779:4943990:4952499:4952607,	4943780	4943990	4943960	4943961	Frame_Shift_Del	TA	-	p.V488fs
STAD	TCGA-CG-5721-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263965	33263966	Frame_Shift_Ins	-	C	p.G203fs
STAD	TCGA-CG-5721-01	KCTD20	ENST00000481911.1,ENST00000536244.1,ENST00000265344.4,ENST00000474988.1,ENST00000373731.2,ENST00000544295.1,ENST00000449081.2	chr6	36449338:36449536:36452490:36452601:36454659:36455183,	36452491	36452601	36452576	36452576	Frame_Shift_Del	A	-	p.L314fs
STAD	TCGA-CG-5721-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784284	135784285	Frame_Shift_Ins	-	TT	p.T304fs
STAD	TCGA-CG-5721-01	MAP3K5	ENST00000359015.4	chr6	136935296:136935424:136943985:136944119:136958462:136958544,	136943986	136944119	136943992	136943993	Frame_Shift_Ins	-	TC	p.D715fs
STAD	TCGA-CG-5721-01	PLEKHG1	ENST00000358517.2,ENST00000367328.1	chr6	151144789:151144812:151151717:151153341:151160968:151161080,	151151718	151153341	151153218	151153218	Frame_Shift_Del	A	-	p.A1049fs
STAD	TCGA-CG-5721-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672365	151672366	Frame_Shift_Ins	-	C	p.E946fs
STAD	TCGA-CG-5721-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975473	13975474	Frame_Shift_Ins	-	G	p.P138fs
STAD	TCGA-CG-5721-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
STAD	TCGA-CG-5721-01	PIK3CG	ENST00000496166.1,ENST00000473541.1,ENST00000440650.2,ENST00000359195.3	chr7	106515144:106515248:106519963:106520110:106522561:106522652,	106519964	106520110	106519994	106519994	Frame_Shift_Del	A	-	p.K807fs
STAD	TCGA-CG-5721-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603524	138603524	Frame_Shift_Del	A	-	p.L283fs
STAD	TCGA-CG-5721-01	ZDHHC2	ENST00000262096.8	chr8	17067440:17067567:17067896:17067989:17072745:17072858,	17067897	17067989	17067924	17067925	Frame_Shift_Ins	-	T	p.T295fs
STAD	TCGA-CG-5721-01	TRPS1	ENST00000519076.1,ENST00000520276.1,ENST00000220888.5,ENST00000395715.3	chr8	116430557:116430680:116599227:116599831:116616099:116616277,	116599228	116599831	116599584	116599585	Frame_Shift_Del	TC	-	p.K782fs
STAD	TCGA-CG-5721-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631857	116631858	Frame_Shift_Ins	-	G	p.P156fs
STAD	TCGA-CG-5721-01	ASAP1	ENST00000519483.1,ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131070199:131070322:131072824:131073315:131088593:131088652,	131072825	131073315	131073125	131073126	Frame_Shift_Ins	-	G	p.P964fs
STAD	TCGA-CG-5721-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138713266	138713267	Frame_Shift_Del	GA	-	p.P1081fs
STAD	TCGA-CG-5721-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-CG-5721-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962452	21962452	Frame_Shift_Del	G	-	p.E408fs
STAD	TCGA-CG-5721-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1863fs
STAD	TCGA-CG-5721-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509529	102509530	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-CG-5721-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509529	102509530	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-CG-5721-01	NOLC1	ENST00000603742.1,ENST00000603946.1,ENST00000605788.1,ENST00000461421.1,ENST00000476468.1,ENST00000488254.2,ENST00000464969.2	chr10	103918949:103919065:103919189:103919325:103919652:103919695,	103919190	103919325	103919299	103919300	Frame_Shift_Ins	-	A	p.Q288fs
STAD	TCGA-CG-5721-01	ZRANB1	ENST00000359653.4	chr10	126655162:126655350:126660533:126660687:126662213:126662285,	126660534	126660687	126660638	126660638	Frame_Shift_Del	T	-	p.D395fs
STAD	TCGA-CG-5721-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269737	1269737	Frame_Shift_Del	C	-	p.T3876fs
STAD	TCGA-CG-5721-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46811625:46811736:46812019:46812133:46817143:46817326,	46812020	46812133	46812114	46812114	Frame_Shift_Del	T	-	p.K557fs
STAD	TCGA-CG-5721-01	PDE2A	ENST00000334456.5,ENST00000441209.2,ENST00000540345.1,ENST00000418754.2,ENST00000376450.3,ENST00000539367.1,ENST00000444035.2,ENST00000544570.1	chr11	72293487:72293610:72294481:72294559:72295244:72295357,	72294482	72294559	72294542	72294542	Frame_Shift_Del	T	-	p.V557fs
STAD	TCGA-CG-5721-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471453	93471453	Frame_Shift_Del	T	-	p.K94fs
STAD	TCGA-CG-5721-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471453	93471453	Frame_Shift_Del	T	-	p.K94fs
STAD	TCGA-CG-5721-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373688	104373689	Frame_Shift_Ins	-	A	p.S82fs
STAD	TCGA-CG-5721-01	BTBD11	ENST00000420571.2,ENST00000280758.5,ENST00000357167.4,ENST00000490090.2	chr12	108006556:108006646:108008837:108008939:108010865:108010959,	108008838	108008939	108008873	108008874	Frame_Shift_Ins	-	C	p.H645fs
STAD	TCGA-CG-5721-01	KCTD10	ENST00000542262.1,ENST00000542858.1,ENST00000535747.1	chr12	109898440:109898610:109907319:109907533:109915064:109915094,	109907320	109907533	109907348	109907349	Frame_Shift_Ins	-	C	p.G71fs
STAD	TCGA-CG-5721-01	CHFR	ENST00000443047.2	chr12	133438132:133438220:133448870:133448980:133454140:133454240,	133448871	133448980	133448913	133448914	Frame_Shift_Ins	-	C	p.D101fs
STAD	TCGA-CG-5721-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041395	Frame_Shift_Ins	-	A	p.F161fs
STAD	TCGA-CG-5721-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729847	24729848	Frame_Shift_Ins	-	C	p.G189fs
STAD	TCGA-CG-5721-01	YLPM1	ENST00000238571.3,ENST00000552421.1,ENST00000549293.1,ENST00000325680.7	chr14	75269258:75269379:75276082:75276500:75276612:75276705,	75276083	75276500	75276389	75276390	Frame_Shift_Ins	-	C	p.P1609fs
STAD	TCGA-CG-5721-01	SERPINA1	ENST00000404814.4,ENST00000448921.1,ENST00000437397.1,ENST00000393088.4,ENST00000402629.1,ENST00000449399.3,ENST00000393087.4	chr14	94847207:94847478:94848928:94849578:94854896:94854926,	94848929	94849578	94849556	94849557	Frame_Shift_Ins	-	A	p.W7fs
STAD	TCGA-CG-5721-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3,ENST00000411772.1	chr15	43730521:43730614:43733723:43733781:43738584:43738788,	43733724	43733781	43733757	43733757	Frame_Shift_Del	T	-	p.N1017fs
STAD	TCGA-CG-5721-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323672	59323673	Frame_Shift_Ins	-	A	p.V217fs
STAD	TCGA-CG-5721-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000559257.1,ENST00000558285.1,ENST00000268049.7,ENST00000557884.1,ENST00000558157.1,ENST00000559192.1,ENST00000559771.1	chr15	63829336:63829355:63845913:63845997:63848865:63848900,	63845914	63845997	63845976	63845977	Frame_Shift_Del	AA	-	p.E116fs
STAD	TCGA-CG-5721-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331226	69331226	Frame_Shift_Del	T	-	p.P467fs
STAD	TCGA-CG-5721-01	ITGAL	ENST00000433423.2,ENST00000358164.5,ENST00000356798.6	chr16	30525091:30525167:30528293:30528407:30528969:30529026,	30528294	30528407	30528333	30528334	Frame_Shift_Ins	-	A	p.P967fs
STAD	TCGA-CG-5721-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.R1893fs
STAD	TCGA-CG-5721-01	CENPN	ENST00000564669.1,ENST00000299572.5,ENST00000393335.3,ENST00000305850.5,ENST00000428963.2	chr16	81047740:81047786:81051362:81051439:81053704:81053751,81050930:81050990:81051362:81051439:81053704:81053751,	81051363	81051439	81051433	81051434	Frame_Shift_Ins	-	A	p.L116fs
STAD	TCGA-CG-5721-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579802	2579802	Frame_Shift_Del	A	-	p.T301fs
STAD	TCGA-CG-5721-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
STAD	TCGA-CG-5721-01	COX11	ENST00000576370.1	chr17	53029295:53029473:53038479:53040276:53040666:53040775,	53038480	53040276	53040139	53040140	Frame_Shift_Ins	-	A	p.F262fs
STAD	TCGA-CG-5721-01	SLC16A5	ENST00000578376.1,ENST00000450736.2,ENST00000580123.1,ENST00000538213.2,ENST00000329783.4	chr17	73094132:73094276:73096101:73096911:73100064:73100275,	73096102	73096911	73096719	73096720	Frame_Shift_Del	GT	-	p.L320fs
STAD	TCGA-CG-5721-01	TTC39C	ENST00000304621.6,ENST00000579214.1,ENST00000317571.3,ENST00000540918.2	chr18	21694517:21694611:21698088:21698196:21703797:21703901,	21698089	21698196	21698147	21698147	Frame_Shift_Del	A	-	p.L379fs
STAD	TCGA-CG-5721-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202354	56202355	Frame_Shift_Del	TC	-	p.K1689fs
STAD	TCGA-CG-5721-01	TNFRSF11A	ENST00000586569.1	chr18	60027187:60027282:60028912:60029026:60033940:60033993,	60028913	60029026	60029005	60029005	Frame_Shift_Del	A	-	p.R236fs
STAD	TCGA-CG-5721-01	ARID3A	ENST00000263620.3	chr19	964247:964431:964832:965080:966571:966868,	964833	965080	965041	965042	Frame_Shift_Ins	-	A	p.T386fs
STAD	TCGA-CG-5721-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581680	17581681	Frame_Shift_Ins	-	T	p.M100fs
STAD	TCGA-CG-5723-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048809	42048809	Frame_Shift_Del	G	-	p.H554fs
STAD	TCGA-CG-5723-01	SYCP1	ENST00000369522.3,ENST00000369518.1,ENST00000455987.1	chr1	115428745:115428930:115430246:115430314:115438068:115438130,	115430247	115430314	115430252	115430252	Frame_Shift_Del	A	-	p.E399fs
STAD	TCGA-CG-5723-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.K131fs
STAD	TCGA-CG-5723-01	LRP2	ENST00000263816.3	chr2	170115534:170115727:170127413:170127617:170129436:170129577,	170127414	170127617	170127462	170127462	Frame_Shift_Del	A	-	p.S758fs
STAD	TCGA-CG-5723-01	CUL3	ENST00000409777.1,ENST00000344951.4,ENST00000264414.4,ENST00000409096.1	chr2	225367708:225367789:225368368:225368539:225370672:225370849,	225368369	225368539	225368388	225368389	Frame_Shift_Ins	-	T	p.N459fs
STAD	TCGA-CG-5723-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157549	106157550	Frame_Shift_Ins	-	C	p.S838fs
STAD	TCGA-CG-5723-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137754641:137754921:137756394:137756651:137759763:137760030,	137756395	137756651	137756625	137756625	Frame_Shift_Del	C	-	p.F1315fs
STAD	TCGA-CG-5723-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374580	180374580	Frame_Shift_Del	T	-	p.L247fs
STAD	TCGA-CG-5723-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374580	180374580	Frame_Shift_Del	T	-	p.L247fs
STAD	TCGA-CG-5723-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7580509	7580509	Frame_Shift_Del	A	-	p.L1362fs
STAD	TCGA-CG-5723-01	DEK	ENST00000397239.3,ENST00000515742.1	chr6	18258183:18258293:18258534:18258636:18264073:18264227,	18258535	18258636	18258596	18258597	Frame_Shift_Ins	-	T	p.K62fs
STAD	TCGA-CG-5723-01	SCUBE3	ENST00000394681.1,ENST00000274938.7	chr6	35212426:35212588:35213004:35213202:35213720:35213873,	35213005	35213202	35213108	35213108	Frame_Shift_Del	C	-	p.N835fs
STAD	TCGA-CG-5723-01	PHF10	ENST00000366780.4	chr6	170116050:170116184:170117918:170117996:170118883:170119008,	170117919	170117996	170117976	170117977	Frame_Shift_Del	TG	-	p.K118fs
STAD	TCGA-CG-5723-01	PHF10	ENST00000480008.1,ENST00000339209.4	chr6	170116050:170116184:170117918:170118002:170118883:170119008,	170117919	170118002	170117976	170117977	Frame_Shift_Del	TG	-	p.K118fs
STAD	TCGA-CG-5723-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855927	Frame_Shift_Del	G	-	p.R297fs
STAD	TCGA-CG-5723-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968162	5968162	Frame_Shift_Del	T	-	p.K690fs
STAD	TCGA-CG-5723-01	DAPK1	ENST00000469067.1,ENST00000469640.2,ENST00000408954.3,ENST00000358077.5,ENST00000472284.1,ENST00000491893.1,ENST00000489291.1	chr9	90219868:90220090:90252857:90252996:90254268:90254398,	90252858	90252996	90252903	90252904	Frame_Shift_Del	TT	-	p.S110fs
STAD	TCGA-CG-5723-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.G23fs
STAD	TCGA-CG-5723-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832910	24832911	Frame_Shift_Ins	-	A	p.K1570fs
STAD	TCGA-CG-5723-01	CALCA	ENST00000331587.4,ENST00000469608.1,ENST00000396372.2,ENST00000359642.3	chr11	14989373:14989400:14991480:14991621:14992652:14992747,14990371:14990543:14991480:14991621:14992652:14992747,	14991481	14991621	14991489	14991490	Frame_Shift_Ins	-	CT	p.E73fs
STAD	TCGA-CG-5723-01	APIP	ENST00000278359.5,ENST00000527830.1,ENST00000532428.2,ENST00000395787.3	chr11	34904222:34904363:34904883:34905051:34909839:34909975,	34904884	34905051	34904909	34904909	Frame_Shift_Del	C	-	p.E219fs
STAD	TCGA-CG-5723-01	FTH1	ENST00000533138.1	chr11	61732309:61732363:61732458:61732987:61734783:61734843,	61732459	61732987	61732517	61732517	Frame_Shift_Del	T	-	p.N110fs
STAD	TCGA-CG-5723-01	FTH1	ENST00000526640.1,ENST00000534180.1,ENST00000273550.7,ENST00000532601.1	chr11	61732309:61732363:61732458:61732584:61732840:61732857,	61732459	61732584	61732517	61732517	Frame_Shift_Del	T	-	p.N110fs
STAD	TCGA-CG-5723-01	FTH1	ENST00000532829.1	chr11	61732309:61732363:61732458:61732577:61732840:61732857,	61732459	61732577	61732517	61732517	Frame_Shift_Del	T	-	p.N110fs
STAD	TCGA-CG-5723-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874019	104874020	Frame_Shift_Del	AC	-	p.C188fs
STAD	TCGA-CG-5723-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920916	57920916	Frame_Shift_Del	T	-	p.L663fs
STAD	TCGA-CG-5723-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921733	Frame_Shift_Ins	-	G	p.P779fs
STAD	TCGA-CG-5723-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-CG-5723-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-CG-5723-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748303	43748304	Frame_Shift_Del	AA	-	p.S830fs
STAD	TCGA-CG-5723-01	PPL	ENST00000590782.2,ENST00000345988.2	chr16	4943541:4943639:4944467:4944619:4945261:4945408,	4944468	4944619	4944500	4944500	Frame_Shift_Del	G	-	p.T455fs
STAD	TCGA-CG-5723-01	KIAA0556	ENST00000261588.4	chr16	27732878:27733016:27751361:27752241:27760904:27761627,	27751362	27752241	27751808	27751809	Frame_Shift_Del	CT	-	p.P730fs
STAD	TCGA-CG-5723-01	CBFB	ENST00000290858.6,ENST00000412916.2,ENST00000561924.2	chr16	67063854:67064080:67070541:67070658:67100584:67100699,67063629:67063716:67070541:67070658:67100584:67100663,	67070542	67070658	67070569	67070570	Frame_Shift_Del	TC	-	p.L64fs
STAD	TCGA-CG-5723-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
STAD	TCGA-CG-5723-01	PHB	ENST00000504124.1,ENST00000300408.3,ENST00000512041.2,ENST00000508009.1,ENST00000446735.1,ENST00000419140.2	chr17	47484122:47484216:47486403:47486520:47486692:47486835,	47486404	47486520	47486482	47486483	Frame_Shift_Del	CT	-	p.E144fs
STAD	TCGA-CG-5723-01	LAMA3	ENST00000399516.3,ENST00000313654.9,ENST00000585600.1	chr18	21333684:21333776:21338359:21338475:21343368:21343487,	21338360	21338475	21338391	21338392	Frame_Shift_Ins	-	G	p.C326fs
STAD	TCGA-CG-5723-01	PLEKHA4	ENST00000596982.1	chr19	49363606:49363716:49364657:49364758:49368759:49368814,	49364658	49364758	49364681	49364682	Frame_Shift_Ins	-	G	p.R115fs
STAD	TCGA-CG-5723-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050026	44050026	Frame_Shift_Del	C	-	p.A346fs
STAD	TCGA-CG-5724-01	CSPP1	ENST00000262210.5,ENST00000519668.1,ENST00000412460.1	chr8	68102884:68102994:68105698:68105837:68107616:68107753,	68105699	68105837	68105772	68105773	Frame_Shift_Del	TT	-	p.L1165fs
STAD	TCGA-CG-5726-01	PARK7	ENST00000493373.1,ENST00000377488.1,ENST00000377491.1,ENST00000338639.5,ENST00000465354.1,ENST00000493678.1,ENST00000497113.1	chr1	8022826:8022935:8025383:8025485:8030953:8031023,8022826:8022935:8025383:8025485:8029404:8029464,	8025384	8025485	8025476	8025477	Frame_Shift_Ins	-	A	p.A61fs
STAD	TCGA-CG-5726-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104629	26104630	Frame_Shift_Ins	-	G	p.P430fs
STAD	TCGA-CG-5726-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836080	35836080	Frame_Shift_Del	A	-	p.C344fs
STAD	TCGA-CG-5726-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.S469fs
STAD	TCGA-CG-5726-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.T118fs
STAD	TCGA-CG-5726-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103666	47103666	Frame_Shift_Del	T	-	p.R2161fs
STAD	TCGA-CG-5726-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212518	185212519	Frame_Shift_Ins	-	A	p.F156fs
STAD	TCGA-CG-5726-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1158fs
STAD	TCGA-CG-5726-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173391	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-CG-5726-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173391	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-CG-5726-01	STK10	ENST00000176763.5	chr5	171509964:171510088:171517235:171517366:171520415:171520581,	171517236	171517366	171517345	171517346	Frame_Shift_Ins	-	T	p.T526fs
STAD	TCGA-CG-5726-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12120206	12120207	Frame_Shift_Ins	-	A	p.L59fs
STAD	TCGA-CG-5726-01	TAP1	ENST00000425148.2,ENST00000354258.4	chr6	32818096:32818294:32818720:32818926:32819885:32820011,	32818721	32818926	32818901	32818902	Frame_Shift_Del	CT	-	p.E350fs
STAD	TCGA-CG-5726-01	LMBRD1	ENST00000472827.1	chr6	70490385:70490446:70500187:70500364:70506704:70506777,	70500188	70500364	70500357	70500358	Frame_Shift_Ins	-	A	p.L26fs
STAD	TCGA-CG-5726-01	FAM135A	ENST00000418814.2,ENST00000505868.1	chr6	71233669:71233824:71234045:71236401:71237994:71238155,	71234046	71236401	71235558	71235559	Frame_Shift_Ins	-	T	p.V924fs
STAD	TCGA-CG-5726-01	FAM135A	ENST00000370479.3,ENST00000457062.2,ENST00000194672.7,ENST00000361499.3	chr6	71233669:71233824:71234633:71236401:71237994:71238155,	71234634	71236401	71235558	71235559	Frame_Shift_Ins	-	T	p.V924fs
STAD	TCGA-CG-5726-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508009	158508010	Frame_Shift_Ins	-	C	p.R1110fs
STAD	TCGA-CG-5726-01	SLC29A4	ENST00000396872.3,ENST00000297195.4	chr7	5331360:5331452:5334490:5334565:5336566:5336829,	5334491	5334565	5334519	5334520	Frame_Shift_Ins	-	G	p.T191fs
STAD	TCGA-CG-5726-01	SLC29A4	ENST00000406453.3	chr7	5331360:5331452:5334495:5334565:5336566:5336829,	5334496	5334565	5334519	5334520	Frame_Shift_Ins	-	G	p.T191fs
STAD	TCGA-CG-5726-01	ASPH	ENST00000379454.4,ENST00000518068.1,ENST00000518306.1,ENST00000356457.5,ENST00000541428.1	chr8	62566126:62566219:62593526:62593595:62596597:62596747,	62593527	62593595	62593555	62593555	Frame_Shift_Del	A	-	p.D99fs
STAD	TCGA-CG-5726-01	DDX58	ENST00000379882.1,ENST00000545044.1,ENST00000379868.1,ENST00000542096.1,ENST00000379883.2	chr9	32480216:32480352:32481337:32481495:32485172:32485277,	32481338	32481495	32481357	32481357	Frame_Shift_Del	A	-	p.L540fs
STAD	TCGA-CG-5726-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.G23fs
STAD	TCGA-CG-5726-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-CG-5726-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1863fs
STAD	TCGA-CG-5726-01	CHST15	ENST00000421115.1	chr10	125804095:125804435:125805182:125806240:125852984:125853098,	125805183	125806240	125805498	125805499	Frame_Shift_Ins	-	C	p.G77fs
STAD	TCGA-CG-5726-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190949	17190949	Frame_Shift_Del	T	-	p.T114fs
STAD	TCGA-CG-5726-01	PARP2	ENST00000250416.5,ENST00000539930.1,ENST00000530598.2,ENST00000527915.1,ENST00000429687.3	chr14	20824465:20824593:20824748:20824848:20825209:20825308,	20824749	20824848	20824817	20824818	Frame_Shift_Ins	-	C	p.A446fs
STAD	TCGA-CG-5726-01	TGM1	ENST00000206765.6	chr14	24729145:24729264:24729655:24729904:24730900:24731089,	24729656	24729904	24729847	24729848	Frame_Shift_Ins	-	C	p.G189fs
STAD	TCGA-CG-5726-01	PIGT	ENST00000535404.1,ENST00000372689.5	chr20	44044822:44044983:44045156:44045334:44047934:44048035,44044822:44044983:44045156:44045334:44047491:44047619,	44045157	44045334	44045332	44045335	Frame_Shift_Del	TGAG	-	p.T121fs
STAD	TCGA-CG-5728-01	DPYD	ENST00000370192.3	chr1	98157276:98157354:98164906:98165103:98187065:98187210,	98164907	98165103	98165043	98165044	Frame_Shift_Ins	-	T	p.M182fs
STAD	TCGA-CG-5728-01	PTPN7	ENST00000464870.1	chr1	202127245:202127429:202128408:202128544:202129672:202129722,	202128409	202128544	202128473	202128473	Frame_Shift_Del	C	-	p.A20fs
STAD	TCGA-CG-5728-01	PTPN7	ENST00000467283.1,ENST00000308986.5,ENST00000462815.1,ENST00000544762.1,ENST00000309017.3,ENST00000495688.1,ENST00000491584.1	chr1	202127245:202127429:202128408:202128582:202129672:202129722,	202128409	202128582	202128473	202128473	Frame_Shift_Del	C	-	p.A20fs
STAD	TCGA-CG-5728-01	PTPN7	ENST00000486116.1	chr1	202127245:202127429:202128408:202128597:202129672:202129722,	202128409	202128597	202128473	202128473	Frame_Shift_Del	C	-	p.A20fs
STAD	TCGA-CG-5728-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977650	99977651	Frame_Shift_Ins	-	A	p.D95fs
STAD	TCGA-CG-5728-01	DDX18	ENST00000263239.2,ENST00000415038.1	chr2	118583022:118583175:118583844:118583958:118586524:118586541,	118583845	118583958	118583909	118583910	Frame_Shift_Ins	-	T	p.I529fs
STAD	TCGA-CG-5728-01	TTLL3	ENST00000427220.1	chr3	9857757:9857886:9859328:9859443:9860238:9860604,	9859329	9859443	9859428	9859429	Frame_Shift_Ins	-	A	p.D138fs
STAD	TCGA-CG-5728-01	CELSR3	ENST00000164024.4,ENST00000544264.1	chr3	48689309:48689481:48689869:48689986:48690434:48690548,	48689870	48689986	48689915	48689915	Frame_Shift_Del	G	-	p.G1973fs
STAD	TCGA-CG-5728-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005145	50005145	Frame_Shift_Del	G	-	p.R96fs
STAD	TCGA-CG-5728-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005145	50005145	Frame_Shift_Del	G	-	p.R96fs
STAD	TCGA-CG-5728-01	PBRM1	ENST00000296302.7,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52598065:52598249:52610556:52610714:52613069:52613215,	52610557	52610714	52610623	52610623	Frame_Shift_Del	T	-	p.M1209fs
STAD	TCGA-CG-5728-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413710	138413710	Frame_Shift_Del	G	-	p.R604fs
STAD	TCGA-CG-5728-01	ABLIM2	ENST00000545242.1,ENST00000361581.5,ENST00000296372.8,ENST00000341937.5	chr4	8021344:8021398:8021928:8022030:8029485:8029584,8021344:8021398:8021928:8022030:8031382:8031503,	8021929	8022030	8021937	8021938	Frame_Shift_Ins	-	T	p.H421fs
STAD	TCGA-CG-5728-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56762882:56763066:56765850:56766050:56768509:56768704,	56765851	56766050	56765965	56765966	Frame_Shift_Ins	-	A	p.E751fs
STAD	TCGA-CG-5728-01	ALPK1	ENST00000509722.1,ENST00000458497.1,ENST00000177648.9,ENST00000504745.1,ENST00000504176.2	chr4	113350304:113350409:113351603:113353737:113356303:113356457,	113351604	113353737	113352135	113352136	Frame_Shift_Ins	-	A	p.N477fs
STAD	TCGA-CG-5728-01	FGB	ENST00000302068.4,ENST00000502545.1	chr4	155487640:155487824:155488744:155488972:155489532:155489646,	155488745	155488972	155488796	155488797	Frame_Shift_Del	TA	-	p.L181fs
STAD	TCGA-CG-5728-01	WWC2	ENST00000403733.3,ENST00000378925.3,ENST00000448232.2,ENST00000438543.1,ENST00000513834.1	chr4	184161335:184161415:184166568:184166698:184169866:184170013,	184166569	184166698	184166576	184166576	Frame_Shift_Del	A	-	p.D203fs
STAD	TCGA-CG-5728-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028881	150028882	Frame_Shift_Ins	-	C	p.D592fs
STAD	TCGA-CG-5728-01	IBTK	ENST00000503400.1,ENST00000369751.2	chr6	82943875:82943972:82949882:82950560:82957278:82957388,	82949883	82950560	82949955	82949956	Frame_Shift_Del	TT	-	p.K83fs
STAD	TCGA-CG-5728-01	NRCAM	ENST00000351718.4,ENST00000465585.1,ENST00000413765.2	chr7	107800805:107800937:107816874:107817051:107818434:107818557,	107816875	107817051	107816976	107816977	Frame_Shift_Ins	-	T	p.N1017fs
STAD	TCGA-CG-5728-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100977562:100977658:100990144:100990303:100994164:100994344,	100990145	100990303	100990288	100990289	Frame_Shift_Ins	-	C	p.V1126fs
STAD	TCGA-CG-5728-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35547974	35547974	Frame_Shift_Del	C	-	p.S485fs
STAD	TCGA-CG-5728-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-CG-5728-01	PTER	ENST00000378000.1,ENST00000298942.3,ENST00000535784.2	chr10	16528350:16528616:16547018:16547159:16553044:16553133,	16547019	16547159	16547037	16547038	Frame_Shift_Del	AG	-	p.K239fs
STAD	TCGA-CG-5728-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27322153:27322306:27323724:27324681:27326114:27326252,	27323725	27324681	27324556	27324560	Frame_Shift_Del	TTTCT	-	p.K940fs
STAD	TCGA-CG-5728-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717770	89717771	Frame_Shift_Ins	-	A	p.L265fs
STAD	TCGA-CG-5728-01	LRP5	ENST00000529993.1,ENST00000294304.7	chr11	68131288:68131411:68133038:68133170:68153783:68154180,	68133039	68133170	68133093	68133093	Frame_Shift_Del	C	-	p.S313fs
STAD	TCGA-CG-5728-01	PA2G4	ENST00000303305.6	chr12	56504965:56505093:56505259:56505313:56506606:56507645,	56505260	56505313	56505302	56505303	Frame_Shift_Ins	-	A	p.K369fs
STAD	TCGA-CG-5728-01	SMARCC2	ENST00000548130.1,ENST00000267064.4,ENST00000549209.1,ENST00000552931.1	chr12	56566211:56566274:56566368:56566488:56567479:56567633,	56566369	56566488	56566437	56566438	Frame_Shift_Del	TC	-	p.K568fs
STAD	TCGA-CG-5728-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
STAD	TCGA-CG-5728-01	ZCCHC8	ENST00000336229.4,ENST00000540586.1,ENST00000543897.1,ENST00000536306.1	chr12	122973932:122974010:122975008:122975114:122977261:122977336,	122975009	122975114	122975046	122975046	Frame_Shift_Del	T	-	p.N129fs
STAD	TCGA-CG-5728-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542718	114542718	Frame_Shift_Del	C	-	p.G150fs
STAD	TCGA-CG-5728-01	EAPP	ENST00000250454.3,ENST00000554792.1	chr14	34993902:34994013:34998563:34998681:35002649:35002733,	34998564	34998681	34998660	34998661	Frame_Shift_Ins	-	T	p.K125fs
STAD	TCGA-CG-5728-01	SOS2	ENST00000216373.5,ENST00000543680.1	chr14	50647289:50647400:50649180:50649324:50655214:50655418,	50649181	50649324	50649247	50649248	Frame_Shift_Del	TG	-	p.T264fs
STAD	TCGA-CG-5728-01	ARID4A	ENST00000395168.3,ENST00000431317.2,ENST00000355431.3,ENST00000348476.3	chr14	58827618:58827760:58830887:58832018:58832235:58832340,	58830888	58832018	58830972	58830972	Frame_Shift_Del	A	-	p.E722fs
STAD	TCGA-CG-5728-01	SYNE2	ENST00000357395.3,ENST00000358025.3,ENST00000553455.1,ENST00000394768.2,ENST00000344113.4,ENST00000554584.1,ENST00000555002.1	chr14	64586147:64586327:64587644:64587779:64588729:64588851,	64587645	64587779	64587757	64587758	Frame_Shift_Ins	-	A	p.Q4379fs
STAD	TCGA-CG-5728-01	TIPIN	ENST00000568216.1,ENST00000562124.1,ENST00000261881.4,ENST00000570251.1	chr15	66641713:66641775:66644466:66644545:66645152:66645291,66643862:66643938:66644466:66644545:66645152:66645293,	66644467	66644545	66644525	66644532	Frame_Shift_Del	CAGGTGCT	-	p.A50fs
STAD	TCGA-CG-5728-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99671083	99671083	Frame_Shift_Del	G	-	p.P838fs
STAD	TCGA-CG-5728-01	CIITA	ENST00000324288.8	chr16	10998600:10998669:11000355:11002006:11002885:11003044,	11000356	11002006	11000726	11000726	Frame_Shift_Del	G	-	p.P460fs
STAD	TCGA-CG-5728-01	CIITA	ENST00000570546.1	chr16	10998600:10998669:11000355:11003044:11004044:11004100,	11000356	11003044	11000726	11000726	Frame_Shift_Del	G	-	p.P460fs
STAD	TCGA-CG-5728-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P596fs
STAD	TCGA-CG-5728-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232950	19232951	Frame_Shift_Ins	-	A	p.S467fs
STAD	TCGA-CG-5728-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19905597	19905598	Frame_Shift_Del	TC	-	p.K367fs
STAD	TCGA-CG-5728-01	PLCB4	ENST00000482123.1,ENST00000473151.1	chr20	9351860:9351942:9352949:9353050:9360700:9360809,	9352950	9353050	9353043	9353043	Frame_Shift_Del	A	-	p.F226fs
STAD	TCGA-CG-5728-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881731	43881732	Frame_Shift_Ins	-	G	p.P102fs
STAD	TCGA-CG-5728-01	IFNGR2	ENST00000545369.2,ENST00000290219.6,ENST00000439213.1,ENST00000405436.1,ENST00000381995.1	chr21	34793786:34793992:34799190:34799339:34804483:34804523,	34799191	34799339	34799320	34799320	Frame_Shift_Del	A	-	p.E181fs
STAD	TCGA-CG-5728-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47860906:47860997:47862409:47862486:47865196:47865350,47860906:47860997:47862409:47862486:47863722:47863861,	47862410	47862486	47862416	47862417	Frame_Shift_Ins	-	T	p.R3210fs
STAD	TCGA-CG-5730-01	LAMB1	ENST00000393561.1,ENST00000222399.6	chr7	107592453:107592668:107593974:107594199:107595911:107596075,	107593975	107594199	107594141	107594141	Frame_Shift_Del	C	-	p.S996fs
STAD	TCGA-CG-5732-01	SPINK5	ENST00000481286.1,ENST00000398454.1,ENST00000476608.1,ENST00000256084.7,ENST00000508733.1,ENST00000507988.1,ENST00000359874.3	chr5	147473916:147474044:147475380:147475468:147477429:147477557,	147475381	147475468	147475440	147475441	Frame_Shift_Ins	-	A	p.E285fs
STAD	TCGA-CG-5733-01	ITGA10	ENST00000538811.1	chr1	145525015:145525117:145527612:145527724:145530266:145530358,	145527613	145527724	145527708	145527709	Frame_Shift_Ins	-	G	p.V49fs
STAD	TCGA-CG-5733-01	S100A2	ENST00000497140.1	chr1	153534052:153534067:153536209:153536329:153537981:153538018,	153536210	153536329	153536254	153536255	Frame_Shift_Ins	-	C	p.E33fs
STAD	TCGA-CG-5733-01	S100A2	ENST00000368709.1	chr1	153533824:153534067:153536209:153536363:153539177:153539231,	153536210	153536363	153536254	153536255	Frame_Shift_Ins	-	C	p.E33fs
STAD	TCGA-CG-5733-01	GBA	ENST00000427500.3	chr1	155208354:155208441:155209676:155209868:155210420:155210508,	155209677	155209868	155209817	155209818	Frame_Shift_Ins	-	AC	p.V56fs
STAD	TCGA-CG-5733-01	GON4L	ENST00000471341.1	chr1	155796660:155796819:155823066:155823597:155826949:155826972,155796660:155796819:155823066:155823597:155826937:155827008,	155823067	155823597	155823172	155823172	Frame_Shift_Del	T	-	p.M134fs
STAD	TCGA-CG-5733-01	FCRL3	ENST00000480682.1	chr1	157665829:157666117:157666929:157667709:157668173:157668419,	157666930	157667709	157666960	157666961	Frame_Shift_Ins	-	T	p.R272fs
STAD	TCGA-CG-5733-01	FCRL3	ENST00000494724.1	chr1	157665829:157666117:157666929:157667119:157667448:157667709,	157666930	157667119	157666960	157666961	Frame_Shift_Ins	-	T	p.R272fs
STAD	TCGA-CG-5733-01	FCRL3	ENST00000368184.3,ENST00000492769.1,ENST00000485028.1,ENST00000368186.5	chr1	157665829:157666117:157666929:157667214:157667448:157667709,	157666930	157667214	157666960	157666961	Frame_Shift_Ins	-	T	p.R272fs
STAD	TCGA-CG-5733-01	EXO1	ENST00000366548.3,ENST00000518483.1,ENST00000348581.5	chr1	242042341:242042645:242045217:242045319:242048615:242048809,	242045218	242045319	242045292	242045292	Frame_Shift_Del	A	-	p.S728fs
STAD	TCGA-CG-5733-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Ins	-	AG	p.D311fs
STAD	TCGA-CG-5733-01	RFC1	ENST00000381897.1	chr4	39308211:39308321:39310255:39310652:39313064:39313169,39308253:39308324:39310255:39310652:39313064:39313169,	39310256	39310652	39310612	39310612	Frame_Shift_Del	T	-	p.N510fs
STAD	TCGA-CG-5733-01	SNX25	ENST00000264694.8,ENST00000504273.1,ENST00000504959.1	chr4	186263129:186263270:186267690:186267804:186274638:186274756,186263129:186263270:186267690:186267804:186272598:186272763,	186267691	186267804	186267705	186267706	Frame_Shift_Ins	-	A	p.L570fs
STAD	TCGA-CG-5733-01	FBXO38	ENST00000340253.5	chr5	147805141:147805264:147806775:147807510:147812986:147813087,	147806776	147807510	147807115	147807115	Frame_Shift_Del	C	-	p.S753fs
STAD	TCGA-CG-5733-01	FBXO38	ENST00000394370.3	chr5	147805141:147805264:147806775:147807285:147812986:147813087,	147806776	147807285	147807115	147807115	Frame_Shift_Del	C	-	p.S753fs
STAD	TCGA-CG-5733-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000369751.2	chr6	82922423:82922510:82923943:82924546:82925792:82925906,	82923944	82924546	82924027	82924028	Frame_Shift_Ins	-	T	p.K707fs
STAD	TCGA-CG-5733-01	ABCB1	ENST00000543898.1,ENST00000265724.3,ENST00000482527.1	chr7	87175264:87175340:87178663:87178834:87179166:87179370,	87178664	87178834	87178807	87178808	Frame_Shift_Del	CT	-	p.G528fs
STAD	TCGA-CG-5733-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479332	100479333	Frame_Shift_Ins	-	G	p.A101fs
STAD	TCGA-CG-5733-01	RGS22	ENST00000523437.1,ENST00000519725.1,ENST00000519092.1,ENST00000360863.6,ENST00000519408.1	chr8	101084372:101084458:101092361:101092583:101105674:101105737,	101092362	101092583	101092490	101092491	Frame_Shift_Ins	-	T	p.I71fs
STAD	TCGA-CG-5733-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091523	35091524	Frame_Shift_Ins	-	G	p.P787fs
STAD	TCGA-CG-5733-01	FBP1	ENST00000415431.1,ENST00000414122.1,ENST00000375326.4	chr9	97372202:97372343:97380049:97380142:97382610:97382773,	97380050	97380142	97380086	97380087	Frame_Shift_Ins	-	A	p.L130fs
STAD	TCGA-CG-5733-01	BMPR1A	ENST00000372037.3	chr10	88649818:88649981:88651883:88651986:88659550:88659647,	88651884	88651986	88651974	88651975	Frame_Shift_Ins	-	T	p.D107fs
STAD	TCGA-CG-5733-01	EIF3A	ENST00000369144.3,ENST00000541549.1	chr10	120796630:120796821:120797749:120797951:120801505:120801697,	120797750	120797951	120797783	120797784	Frame_Shift_Del	TC	-	p.D1232fs
STAD	TCGA-CG-5733-01	CDHR5	ENST00000397542.2,ENST00000531177.1,ENST00000358353.3	chr11	617953:618111:618598:619180:619305:619390,	618599	619180	618900	618901	Frame_Shift_Ins	-	G	p.P553fs
STAD	TCGA-CG-5733-01	NUP160	ENST00000530326.1,ENST00000378460.2,ENST00000528071.1	chr11	47827704:47827864:47828621:47828692:47829947:47830081,	47828622	47828692	47828647	47828648	Frame_Shift_Del	AG	-	p.S807fs
STAD	TCGA-CG-5733-01	IGHMBP2	ENST00000255078.3	chr11	68685203:68685351:68696650:68696825:68700766:68700849,	68696651	68696825	68696803	68696803	Frame_Shift_Del	C	-	p.L404fs
STAD	TCGA-CG-5733-01	MMP10	ENST00000539681.1	chr11	102649943:102650092:102650234:102650476:102651217:102651359,	102650235	102650476	102650395	102650396	Frame_Shift_Ins	-	T	p.I63fs
STAD	TCGA-CG-5733-01	GXYLT1	ENST00000280876.6,ENST00000398675.3	chr12	42491711:42491835:42499619:42499871:42503367:42503493,	42499620	42499871	42499816	42499817	Frame_Shift_Ins	-	A	p.L223fs
STAD	TCGA-CG-5733-01	LIMA1	ENST00000552720.1,ENST00000341247.4,ENST00000394943.3	chr12	50599766:50599851:50615803:50616268:50625447:50625493,	50615804	50616268	50615953	50615953	Frame_Shift_Del	T	-	p.M161fs
STAD	TCGA-CG-5733-01	RAB3IP	ENST00000378809.4,ENST00000362025.5,ENST00000325555.9,ENST00000552199.1,ENST00000547591.1,ENST00000417413.3,ENST00000247833.7,ENST00000550536.1,ENST00000483530.2,ENST00000378815.6	chr12	70149350:70149439:70150184:70150443:70178499:70178595,	70150185	70150443	70150275	70150276	Frame_Shift_Del	AG	-	p.A130fs
STAD	TCGA-CG-5733-01	NETO2	ENST00000303155.5	chr16	47163134:47163275:47165879:47165936:47177489:47177620,	47165880	47165936	47165886	47165887	Frame_Shift_Ins	-	T	p.T29fs
STAD	TCGA-CG-5733-01	NCOR1	ENST00000395851.1,ENST00000458113.2,ENST00000268712.3	chr17	15974722:15974979:15975458:15975542:15976742:15976883,	15975459	15975542	15975514	15975514	Frame_Shift_Del	C	-	p.S1281fs
STAD	TCGA-CG-5733-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56201232:56201316:56203119:56203423:56204051:56204162,	56203120	56203423	56203184	56203184	Frame_Shift_Del	G	-	p.W276fs
STAD	TCGA-D7-5578-01	TTC3	ENST00000438055.1,ENST00000450533.1,ENST00000492275.1,ENST00000540756.1,ENST00000479930.1,ENST00000354749.2,ENST00000485402.1,ENST00000418766.1,ENST00000463216.1,ENST00000355666.1,ENST00000476784.1,ENST00000399017.2	chr21	38480691:38480746:38494116:38494279:38495282:38495328,	38494117	38494279	38494204	38494204	Frame_Shift_Del	A	-	p.C329fs
STAD	TCGA-D7-5579-01	FMR1	ENST00000495717.1	chrX	147003450:147003503:147007057:147007151:147009839:147009911,147003450:147003503:147007057:147007151:147010176:147010325,	147007058	147007151	147007109	147007115	Frame_Shift_Del	TGTAGGT	-	p.P52fs
STAD	TCGA-D7-6526-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1017954	1017961	Frame_Shift_Del	ACGTGAGT	-	p.T1614fs
STAD	TCGA-D7-6526-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573994	7573995	Frame_Shift_Ins	-	TCAGC	p.N345fs
STAD	TCGA-D7-6528-01	CAMK1G	ENST00000361322.2,ENST00000009105.1	chr1	209784809:209784897:209785136:209785561:209786129:209786257,	209785137	209785561	209785554	209785555	Frame_Shift_Ins	-	A	p.N444fs
STAD	TCGA-D7-6528-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469776	161469777	Frame_Shift_Ins	-	A	p.R157fs
STAD	TCGA-D7-6815-01	PTPN7	ENST00000496197.1,ENST00000308986.5,ENST00000477554.1,ENST00000462815.1,ENST00000544762.1,ENST00000367279.4,ENST00000492977.1,ENST00000543735.1,ENST00000480836.1,ENST00000309017.3,ENST00000495688.1	chr1	202119438:202119552:202121669:202121827:202122852:202122938,	202121670	202121827	202121712	202121712	Frame_Shift_Del	G	-	p.P278fs
STAD	TCGA-D7-6815-01	SMAD4	ENST00000591126.1,ENST00000588745.1,ENST00000398417.2,ENST00000342988.3	chr18	48591792:48591976:48593388:48593557:48603007:48603146,	48593389	48593557	48593482	48593483	Frame_Shift_Ins	-	T	p.S411fs
STAD	TCGA-D7-6817-01	ANK1	ENST00000524227.1	chr8	41529871:41529944:41530033:41530430:41542061:41542208,	41530034	41530430	41530028	41530034	Frame_Shift_Del	TCTGACC	-	p.R1645fs
STAD	TCGA-D7-6818-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365107	37365108	Frame_Shift_Ins	-	A	p.E577fs
STAD	TCGA-D7-6822-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000358577.3,ENST00000456101.2	chr6	109770602:109770684:109770859:109770986:109771172:109771288,	109770860	109770986	109770864	109770864	Frame_Shift_Del	T	-	p.N496fs
STAD	TCGA-D7-8572-01	CCDC158	ENST00000388914.3	chr4	77252496:77252556:77253584:77253644:77255174:77255320,	77253585	77253644	77253601	77253605	Frame_Shift_Del	ATCTC	-	p.R951fs
STAD	TCGA-D7-8575-01	ZSWIM5	ENST00000359600.5	chr1	45486296:45486460:45499983:45500141:45501359:45501495,	45499984	45500141	45500008	45500009	Frame_Shift_Ins	-	A	p.S809fs
STAD	TCGA-D7-A4YT-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39801326	39801342	Frame_Shift_Del	AAGTGAAAAAGGGAAAG	-	p.S1462fs
STAD	TCGA-D7-A4YT-01	MYT1L	ENST00000399161.2	chr2	1920976:1921111:1926057:1927035:1946753:1947106,	1926058	1927035	1926075	1926076	Frame_Shift_Ins	-	T	p.K489fs
STAD	TCGA-D7-A4YT-01	MYT1L	ENST00000428368.2	chr2	1920976:1921111:1926063:1927035:1946753:1947106,	1926064	1927035	1926075	1926076	Frame_Shift_Ins	-	T	p.K489fs
STAD	TCGA-D7-A4YT-01	KIAA0100	ENST00000528896.2,ENST00000389003.3,ENST00000544884.1	chr17	26960566:26960769:26960912:26961104:26961534:26961688,	26960913	26961104	26960977	26960983	Frame_Shift_Del	AAGCCCC	-	p.G1065fs
STAD	TCGA-D7-A4YT-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384018	12384024	Frame_Shift_Del	GAACCAG	-	p.P397fs
STAD	TCGA-D7-A4YV-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.S469fs
STAD	TCGA-D7-A4YV-01	TAL1	ENST00000371884.2,ENST00000294339.3	chr1	47689743:47689770:47691114:47691561:47694867:47695023,	47691115	47691561	47691475	47691476	Frame_Shift_Ins	-	G	p.P29fs
STAD	TCGA-D7-A4YV-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100327812:100327979:100329941:100330145:100335955:100336137,	100329942	100330145	100330093	100330094	Frame_Shift_Ins	-	A	p.L204fs
STAD	TCGA-D7-A4YV-01	ACP1	ENST00000484464.1,ENST00000480874.1,ENST00000442386.1,ENST00000272065.5	chr2	271865:271939:272036:272150:276979:277085,271892:271939:272036:272150:275139:275200,	272037	272150	272081	272082	Frame_Shift_Ins	-	C	p.N54fs
STAD	TCGA-D7-A4YV-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71797728:71797871:71801327:71801501:71816722:71816816,	71801328	71801501	71801492	71801492	Frame_Shift_Del	G	-	p.E1131fs
STAD	TCGA-D7-A4YV-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114824639	114824639	Frame_Shift_Del	A	-	p.G198fs
STAD	TCGA-D7-A4YV-01	RARS2	ENST00000369536.5	chr6	88231181:88231242:88234274:88234370:88239259:88239366,	88234275	88234370	88234285	88234286	Frame_Shift_Del	AG	-	p.Y322fs
STAD	TCGA-D7-A4YV-01	RAB2A	ENST00000466595.1,ENST00000530071.1,ENST00000531289.1,ENST00000262646.7,ENST00000452437.1	chr8	61497281:61497374:61504416:61504528:61531138:61531207,	61504417	61504528	61504441	61504442	Frame_Shift_Ins	-	A	p.V129fs
STAD	TCGA-D7-A4YV-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124534951:124535774:124536538:124536691:124538476:124538670,	124536539	124536691	124536637	124536638	Frame_Shift_Ins	-	C	p.D994fs
STAD	TCGA-D7-A4YV-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.M1863fs
STAD	TCGA-D7-A4YV-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660980	3660981	Frame_Shift_Ins	-	GG	p.H227fs
STAD	TCGA-D7-A4YV-01	SF1	ENST00000334944.5,ENST00000413951.1,ENST00000227503.9,ENST00000432725.1,ENST00000433274.2,ENST00000377387.1,ENST00000377394.3,ENST00000377390.3	chr11	64537851:64537880:64540901:64540977:64543969:64544098,	64540902	64540977	64540917	64540917	Frame_Shift_Del	G	-	p.P74fs
STAD	TCGA-D7-A4YV-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
STAD	TCGA-D7-A4YV-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921733	Frame_Shift_Ins	-	G	p.P779fs
STAD	TCGA-D7-A4YV-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61103096:61103351:61109241:61109367:61141658:61141784,	61109242	61109367	61109249	61109249	Frame_Shift_Del	G	-	p.R574fs
STAD	TCGA-D7-A4YV-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542718	114542718	Frame_Shift_Del	C	-	p.G150fs
STAD	TCGA-D7-A4YV-01	FOXN3	ENST00000555855.1	chr14	89817071:89817152:89878277:89878834:89952912:89953012,	89878278	89878834	89878534	89878534	Frame_Shift_Del	G	-	p.P96fs
STAD	TCGA-D7-A4YV-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-D7-A4YV-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
STAD	TCGA-D7-A4YV-01	SNRPA1	ENST00000560856.1,ENST00000558036.1,ENST00000558020.1,ENST00000559309.1	chr15	101832166:101832245:101833229:101833377:101835301:101835408,	101833230	101833377	101833235	101833236	Frame_Shift_Del	TC	-	p.R75fs
STAD	TCGA-D7-A4YV-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4881798:4881925:4882978:4883916:4884519:4884654,	4882979	4883916	4883438	4883439	Frame_Shift_Ins	-	C	p.G416fs
STAD	TCGA-D7-A4YV-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
STAD	TCGA-D7-A4YV-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
STAD	TCGA-D7-A4YV-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903414	5903414	Frame_Shift_Del	A	-	p.I208fs
STAD	TCGA-D7-A4YV-01	FANCB	ENST00000452869.1,ENST00000324138.3,ENST00000398334.1	chrX	14862624:14862862:14862977:14863408:14868626:14868796,	14862978	14863408	14863040	14863040	Frame_Shift_Del	A	-	p.L622fs
STAD	TCGA-D7-A4YV-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L574fs
STAD	TCGA-D7-A4YX-01	MACC1	ENST00000589011.1,ENST00000400331.5,ENST00000332878.4	chr7	20193815:20194004:20197826:20199868:20201370:20201493,	20197827	20199868	20198552	20198553	Frame_Shift_Del	TG	-	p.R478fs
STAD	TCGA-D7-A4YY-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818826	214818827	Frame_Shift_Ins	-	A	p.S1971fs
STAD	TCGA-D7-A4YY-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1653207	1653207	Frame_Shift_Del	T	-	p.N782fs
STAD	TCGA-D7-A4YY-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381419	109381420	Frame_Shift_Ins	-	T	p.V1475fs
STAD	TCGA-D7-A4YY-01	MTMR14	ENST00000296003.4	chr3	9730627:9730766:9739394:9739550:9743473:9743608,9731647:9731827:9739394:9739550:9743473:9743608,	9739395	9739550	9739422	9739423	Frame_Shift_Del	CT	-	p.S547fs
STAD	TCGA-D7-A4YY-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178990	33178990	Frame_Shift_Del	G	-	p.S170fs
STAD	TCGA-D7-A4YY-01	SYTL3	ENST00000297239.9,ENST00000367081.3,ENST00000360448.3	chr6	159181671:159181777:159183107:159183210:159184335:159184541,	159183108	159183210	159183138	159183141	Frame_Shift_Del	TTTG	-	p.L482fs
STAD	TCGA-D7-A4YY-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696453	Frame_Shift_Ins	-	G	p.P1005fs
STAD	TCGA-D7-A4YY-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629293	6629294	Frame_Shift_Ins	-	C	p.S36fs
STAD	TCGA-D7-A4YY-01	MDK	ENST00000359803.3,ENST00000395566.4,ENST00000533952.1,ENST00000481047.1,ENST00000407067.1,ENST00000395565.1,ENST00000490240.1,ENST00000489525.1,ENST00000405308.2	chr11	46403242:46403308:46403843:46404011:46404136:46404286,46403606:46403683:46403843:46404011:46404136:46404147,	46403844	46404011	46403892	46403893	Frame_Shift_Ins	-	G	p.W42fs
STAD	TCGA-D7-A4YY-01	IGHMBP2	ENST00000255078.3	chr11	68685203:68685351:68696650:68696825:68700766:68700849,	68696651	68696825	68696803	68696803	Frame_Shift_Del	C	-	p.L404fs
STAD	TCGA-D7-A4YY-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471453	93471453	Frame_Shift_Del	T	-	p.K94fs
STAD	TCGA-D7-A4YY-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471453	93471453	Frame_Shift_Del	T	-	p.K94fs
STAD	TCGA-D7-A4YY-01	NCAPD2	ENST00000382457.4,ENST00000545962.1,ENST00000315579.5,ENST00000539084.1	chr12	6630155:6630276:6630963:6631203:6631993:6632168,	6630964	6631203	6631162	6631163	Frame_Shift_Ins	-	T	p.I638fs
STAD	TCGA-D7-A4YY-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670283	99670284	Frame_Shift_Ins	-	GA	p.R572fs
STAD	TCGA-D7-A4YY-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P596fs
STAD	TCGA-D7-A4YY-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310486	33310487	Frame_Shift_Ins	-	A	p.T154fs
STAD	TCGA-D7-A4YY-01	LIG3	ENST00000592690.1	chr17	33307595:33307641:33310250:33310571:33313006:33313150,	33310251	33310571	33310486	33310487	Frame_Shift_Ins	-	A	p.T154fs
STAD	TCGA-D7-A4YY-01	MZF1	ENST00000599369.1,ENST00000594234.1,ENST00000215057.2,ENST00000594108.1	chr19	59080882:59080953:59081710:59081894:59082360:59082796,	59081711	59081894	59081816	59081817	Frame_Shift_Del	CA	-	p.E159fs
STAD	TCGA-D7-A4YY-01	CHGB	ENST00000378961.4	chr20	5897471:5897565:5902980:5904746:5905617:5905719,	5902981	5904746	5903414	5903415	Frame_Shift_Ins	-	A	p.I208fs
STAD	TCGA-D7-A4YY-01	ITSN1	ENST00000381291.4,ENST00000440794.1,ENST00000399355.2,ENST00000381318.3	chr21	35172226:35172233:35174733:35174748:35183278:35183526,	35174734	35174748	35174740	35174741	Frame_Shift_Ins	-	G	p.K770fs
STAD	TCGA-D7-A4YY-01	ITSN1	ENST00000419241.1	chr21	35172111:35172233:35174740:35174748:35183278:35183526,	35174741	35174748	35174740	35174741	Frame_Shift_Ins	-	G	p.K770fs
STAD	TCGA-D7-A4YY-01	HLCS	ENST00000336648.4,ENST00000399120.1	chr21	38302550:38302733:38308748:38309692:38311131:38311294,	38308749	38309692	38308768	38308769	Frame_Shift_Ins	-	C	p.G326fs
STAD	TCGA-D7-A4YY-01	MB	ENST00000419229.1	chr22	36007016:36007153:36013209:36013312:36019237:36019401,36007016:36007153:36013209:36013312:36018524:36018571,36007016:36007153:36013209:36013312:36018012:36018143,	36013210	36013312	36013257	36013258	Frame_Shift_Ins	-	C	p.G16fs
STAD	TCGA-EQ-8122-01	AMD1	ENST00000368877.5	chr6	111208707:111208794:111210059:111210186:111211456:111211559,111195987:111196418:111210059:111210186:111211456:111211559,	111210060	111210186	111210105	111210106	Frame_Shift_Del	AT	-	p.T81fs
STAD	TCGA-EQ-8122-01	GSDMB	ENST00000394175.2	chr17	38064428:38064467:38065210:38065295:38066008:38066177,38063213:38063240:38065210:38065295:38066008:38066177,38062447:38062524:38065210:38065295:38066008:38066177,	38065211	38065295	38065247	38065254	Frame_Shift_Del	CTCGATAG	-	p.Y207fs
STAD	TCGA-EQ-A4SO-01	JAK1	ENST00000342505.4	chr1	65334993:65335157:65339052:65339206:65344707:65344746,	65339053	65339206	65339111	65339112	Frame_Shift_Ins	-	T	p.K142fs
STAD	TCGA-EQ-A4SO-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121963	12121978	Frame_Shift_Del	GCTACAAAGGCAGCAG	-	p.Q645fs
STAD	TCGA-F1-6177-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
STAD	TCGA-F1-6177-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798936	39798936	Frame_Shift_Del	A	-	p.D665fs
STAD	TCGA-F1-6177-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081757	55081757	Frame_Shift_Del	G	-	p.T118fs
STAD	TCGA-F1-6177-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-F1-6177-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-F1-6177-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-F1-6177-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-F1-6177-01	NEK7	ENST00000367385.4,ENST00000538004.1,ENST00000391974.3	chr1	198201682:198201767:198222169:198222310:198231704:198231753,	198222170	198222310	198222298	198222299	Frame_Shift_Ins	-	A	p.L62fs
STAD	TCGA-F1-6177-01	ITSN2	ENST00000361999.3	chr2	24498581:24498718:24509080:24509220:24516556:24516644,	24509081	24509220	24509096	24509097	Frame_Shift_Ins	-	A	p.F616fs
STAD	TCGA-F1-6177-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169997025	169997026	Frame_Shift_Ins	-	G	p.P4380fs
STAD	TCGA-F1-6177-01	NOP58	ENST00000264279.5	chr2	203162567:203162629:203164956:203165090:203167643:203167780,	203164957	203165090	203165009	203165010	Frame_Shift_Ins	-	A	p.S440fs
STAD	TCGA-F1-6177-01	SRGAP3	ENST00000383836.3	chr3	9069783:9069814:9074333:9074436:9079746:9079774,9068618:9068679:9074333:9074436:9079746:9079774,	9074334	9074436	9074430	9074431	Frame_Shift_Ins	-	G	p.P481fs
STAD	TCGA-F1-6177-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103755	47103756	Frame_Shift_Ins	-	TC	p.D2131fs
STAD	TCGA-F1-6177-01	UMPS	ENST00000536109.1,ENST00000232607.2,ENST00000467167.1	chr3	124453939:124454093:124456414:124457086:124458870:124459046,	124456415	124457086	124457071	124457072	Frame_Shift_Ins	-	A	p.V322fs
STAD	TCGA-F1-6177-01	UMPS	ENST00000474588.1	chr3	124453939:124454093:124456761:124457086:124458870:124459046,	124456762	124457086	124457071	124457072	Frame_Shift_Ins	-	A	p.V322fs
STAD	TCGA-F1-6177-01	UMPS	ENST00000479719.1	chr3	124453939:124454093:124456414:124457290:124458870:124459046,	124456415	124457290	124457071	124457072	Frame_Shift_Ins	-	A	p.V322fs
STAD	TCGA-F1-6177-01	RAB7A	ENST00000490093.1,ENST00000482525.1,ENST00000464496.1,ENST00000265062.3	chr3	128514202:128514263:128516785:128516912:128525214:128525292,	128516786	128516912	128516848	128516849	Frame_Shift_Ins	-	CC	p.A39fs
STAD	TCGA-F1-6177-01	PRKCI	ENST00000295797.4	chr3	169993016:169993075:169998014:169998191:169998953:169999026,	169998015	169998191	169998128	169998129	Frame_Shift_Ins	-	A	p.L273fs
STAD	TCGA-F1-6177-01	LIAS	ENST00000509519.1	chr4	39460739:39460782:39462409:39462582:39463815:39463909,39460739:39460782:39462409:39462582:39465144:39465225,	39462410	39462582	39462464	39462465	Frame_Shift_Ins	-	A	p.D33fs
STAD	TCGA-F1-6177-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784284	135784285	Frame_Shift_Ins	-	T	p.T304fs
STAD	TCGA-F1-6177-01	CBLL1	ENST00000432748.1,ENST00000440859.3,ENST00000222597.2,ENST00000420796.1	chr7	107394339:107394423:107395862:107395936:107398587:107398625,	107395863	107395936	107395909	107395909	Frame_Shift_Del	A	-	p.E138fs
STAD	TCGA-F1-6177-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155904	108155907	Frame_Shift_Del	ATAT	-	p.Y10fs
STAD	TCGA-F1-6177-01	TYRP1	ENST00000381136.2,ENST00000388918.5,ENST00000381137.2	chr9	12704666:12704705:12707996:12708143:12708976:12709235,	12707997	12708143	12708068	12708069	Frame_Shift_Ins	-	C	p.W444fs
STAD	TCGA-F1-6177-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96859602:96860861:96863847:96864033:96866556:96866667,	96863848	96864033	96864017	96864018	Frame_Shift_Ins	-	T	p.L728fs
STAD	TCGA-F1-6177-01	DAB2IP	ENST00000259371.2,ENST00000408936.3,ENST00000309989.1,ENST00000373782.3	chr9	124534951:124535774:124536538:124536691:124538476:124538670,	124536539	124536691	124536637	124536638	Frame_Shift_Ins	-	C	p.D994fs
STAD	TCGA-F1-6177-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
STAD	TCGA-F1-6177-01	MCAM	ENST00000264036.4,ENST00000525586.1,ENST00000528533.1,ENST00000392814.1	chr11	119182052:119182131:119182239:119182361:119182517:119182659,	119182240	119182361	119182355	119182356	Frame_Shift_Ins	-	G	p.P431fs
STAD	TCGA-F1-6177-01	LARP4	ENST00000347328.5	chr12	50835372:50835426:50848096:50848200:50854917:50855130,	50848097	50848200	50848191	50848192	Frame_Shift_Ins	-	A	p.Q371fs
STAD	TCGA-F1-6177-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025103	58025104	Frame_Shift_Ins	-	C	p.G88fs
STAD	TCGA-F1-6177-01	PLBD2	ENST00000280800.3,ENST00000545182.2	chr12	113824741:113824894:113825548:113825711:113826263:113827043,	113825549	113825711	113825652	113825653	Frame_Shift_Ins	-	A	p.A514fs
STAD	TCGA-F1-6177-01	LGALS3	ENST00000553755.1	chr14	55595977:55596018:55604762:55605086:55606992:55607081,	55604763	55605086	55605003	55605004	Frame_Shift_Ins	-	G	p.P86fs
STAD	TCGA-F1-6177-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645340	Frame_Shift_Ins	-	A	p.A201fs
STAD	TCGA-F1-6177-01	USP10	ENST00000567526.1	chr16	84801872:84801964:84806146:84806291:84808765:84808831,84801872:84801964:84806146:84806291:84812500:84812593,	84806147	84806291	84806175	84806176	Frame_Shift_Ins	-	A	p.E680fs
STAD	TCGA-F1-6177-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448299	Frame_Shift_Ins	-	G	p.R117fs
STAD	TCGA-F1-6177-01	EPB41L3	ENST00000341928.2,ENST00000540638.2,ENST00000342933.3,ENST00000400111.3,ENST00000544123.1,ENST00000545076.1	chr18	5438033:5438109:5443836:5443879:5445138:5445243,	5443837	5443879	5443847	5443847	Frame_Shift_Del	T	-	p.Q174fs
STAD	TCGA-F1-6177-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4	chr19	45992603:45992811:45996417:45996636:45997423:45997678,	45996418	45996636	45996513	45996513	Frame_Shift_Del	G	-	p.P313fs
STAD	TCGA-F1-6177-01	DIP2A	ENST00000400274.1,ENST00000435722.3,ENST00000457905.3,ENST00000427143.2,ENST00000417564.2	chr21	47918494:47918746:47924273:47924402:47929169:47929289,	47924274	47924402	47924286	47924287	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-F1-6177-01	DIP2A	ENST00000318711.7	chr21	47918494:47918746:47924270:47924402:47929169:47929289,	47924271	47924402	47924286	47924287	Frame_Shift_Ins	-	C	p.A223fs
STAD	TCGA-F1-6874-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.S469fs
STAD	TCGA-F1-6874-01	HORMAD1	ENST00000322343.7,ENST00000361824.2,ENST00000476530.1,ENST00000368993.2	chr1	150686560:150686597:150687090:150687154:150689613:150689758,	150687091	150687154	150687103	150687104	Frame_Shift_Del	TG	-	p.Q77fs
STAD	TCGA-F1-6874-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134660	161134660	Frame_Shift_Del	A	-	p.I473fs
STAD	TCGA-F1-6874-01	EPHX1	ENST00000272167.5,ENST00000366837.4	chr1	226019479:226019660:226026354:226026582:226026917:226026953,	226026355	226026582	226026384	226026384	Frame_Shift_Del	C	-	p.K131fs
STAD	TCGA-F1-6874-01	MLH1	ENST00000435176.1,ENST00000457004.1,ENST00000458205.2,ENST00000432299.1,ENST00000456676.2,ENST00000442249.1,ENST00000454028.1,ENST00000536378.1,ENST00000485889.1,ENST00000231790.2,ENST00000455445.2,ENST00000492474.1	chr3	37048481:37048554:37050304:37050396:37053310:37053327,	37050305	37050396	37050312	37050331	Frame_Shift_Del	ACCTTTTTTACAACATAGCC	-	p.D154fs
STAD	TCGA-F1-6874-01	TMEM45A	ENST00000449609.1,ENST00000462884.1,ENST00000403410.1	chr3	100238376:100238452:100274052:100274245:100275603:100275666,	100274053	100274245	100274058	100274059	Frame_Shift_Ins	-	G	p.M17fs
STAD	TCGA-F1-6874-01	CEP63	ENST00000354446.3,ENST00000337090.3,ENST00000513612.2,ENST00000508778.1,ENST00000383229.3,ENST00000511574.1,ENST00000332047.5,ENST00000606977.1	chr3	134250690:134250782:134251619:134251742:134255996:134256043,	134251620	134251742	134251733	134251733	Frame_Shift_Del	A	-	p.A144fs
STAD	TCGA-F1-6874-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485489	Frame_Shift_Ins	-	G	p.T1314fs
STAD	TCGA-F1-6874-01	MAL2	ENST00000276681.6,ENST00000522112.2,ENST00000521748.1,ENST00000531508.1,ENST00000534619.1	chr8	120233826:120233997:120252404:120252560:120255656:120255762,	120252405	120252560	120252427	120252428	Frame_Shift_Ins	-	T	p.V109fs
STAD	TCGA-F1-6874-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-F1-6874-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673439	Frame_Shift_Ins	-	G	p.R201fs
STAD	TCGA-F1-6874-01	NUP98	ENST00000397007.4,ENST00000324932.7,ENST00000397004.4,ENST00000355260.3,ENST00000359171.4	chr11	3794861:3794969:3797111:3797251:3800102:3800279,	3797112	3797251	3797187	3797188	Frame_Shift_Ins	-	A	p.F140fs
STAD	TCGA-F1-6874-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629353	6629354	Frame_Shift_Ins	-	G	p.R56fs
STAD	TCGA-F1-6874-01	HPS5	ENST00000352460.3	chr11	18309439:18309560:18312988:18313566:18314445:18314523,18309439:18309560:18312988:18313566:18316566:18316716,	18312989	18313566	18313387	18313388	Frame_Shift_Ins	-	T	p.K681fs
STAD	TCGA-F1-6874-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812318	Frame_Shift_Ins	-	G	p.P375fs
STAD	TCGA-F1-6874-01	USP2	ENST00000260187.2	chr11	119230893:119230944:119243416:119244231:119252182:119252421,	119243417	119244231	119243681	119243682	Frame_Shift_Ins	-	G	p.P170fs
STAD	TCGA-F1-6874-01	LPCAT3	ENST00000261407.4,ENST00000536797.1,ENST00000543794.1	chr12	7091836:7091943:7092592:7092700:7125577:7125778,	7092593	7092700	7092600	7092601	Frame_Shift_Ins	-	A	p.F84fs
STAD	TCGA-F1-6874-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
STAD	TCGA-F1-6874-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93760865	93760866	Frame_Shift_Ins	-	A	p.F167fs
STAD	TCGA-F1-6874-01	ARHGAP17	ENST00000572314.1,ENST00000441763.2,ENST00000303665.5,ENST00000289968.6,ENST00000570841.1	chr16	24958802:24958916:24960724:24960805:24963609:24963691,	24960725	24960805	24960784	24960785	Frame_Shift_Ins	-	T	p.K356fs
STAD	TCGA-F1-6874-01	TNS4	ENST00000254051.6	chr17	38644797:38645221:38652238:38652772:38657785:38657849,	38652239	38652772	38652589	38652595	Frame_Shift_Del	GGGTGCA	-	p.L28fs
STAD	TCGA-F1-6874-01	GPS1	ENST00000578552.1,ENST00000584460.1,ENST00000355130.2,ENST00000320548.4,ENST00000306823.6,ENST00000392358.2	chr17	80014161:80014267:80014345:80014426:80014504:80014642,	80014346	80014426	80014374	80014375	Frame_Shift_Ins	-	C	p.A395fs
STAD	TCGA-F1-6874-01	TJP3	ENST00000589378.1,ENST00000539908.2,ENST00000541714.2,ENST00000382008.3,ENST00000587686.1,ENST00000262968.9	chr19	3738552:3738661:3738894:3739132:3740549:3740761,	3738895	3739132	3738930	3738933	Frame_Shift_Del	TCCT	-	p.D509fs
STAD	TCGA-F1-6874-01	TIMM44	ENST00000600748.1,ENST00000270538.3,ENST00000595831.1	chr19	7999949:8000030:8002911:8003082:8005986:8006082,	8002912	8003082	8002975	8002975	Frame_Shift_Del	T	-	p.F84fs
STAD	TCGA-F1-A448-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000446276.1,ENST00000497964.1,ENST00000567887.1,ENST00000361689.2,ENST00000372925.2,ENST00000564288.1	chr1	39924794:39924921:39926303:39926466:39927554:39927709,	39926304	39926466	39926343	39926343	Frame_Shift_Del	A	-	p.R5576fs
STAD	TCGA-F1-A448-01	FAM19A3	ENST00000361886.3	chr1	113265637:113265787:113266634:113266759:113269250:113269857,	113266635	113266759	113266684	113266684	Frame_Shift_Del	G	-	p.R128fs
STAD	TCGA-F1-A448-01	FAM19A3	ENST00000369630.3	chr1	113265637:113265787:113266566:113266759:113269250:113269857,	113266567	113266759	113266684	113266684	Frame_Shift_Del	G	-	p.R128fs
STAD	TCGA-F1-A448-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877786	150877787	Frame_Shift_Ins	-	C	p.G335fs
STAD	TCGA-F1-A448-01	SUPT3H	ENST00000475057.1,ENST00000306867.5,ENST00000371459.1,ENST00000371460.1,ENST00000371461.2	chr6	44921046:44921154:44922231:44922344:44929489:44929565,	44922232	44922344	44922337	44922337	Frame_Shift_Del	T	-	p.A197fs
STAD	TCGA-F1-A448-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
STAD	TCGA-F1-A448-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559114	Frame_Shift_Ins	-	G	p.P1043fs
STAD	TCGA-F1-A448-01	RIN2	ENST00000255006.6,ENST00000484638.1	chr20	19951481:19951573:19955297:19956431:19970649:19970955,	19955298	19956431	19956092	19956093	Frame_Shift_Ins	-	C	p.A523fs
STAD	TCGA-FP-7735-01	PTK7	ENST00000230418.4,ENST00000471863.1,ENST00000352931.2,ENST00000481273.1,ENST00000349241.2,ENST00000487673.1,ENST00000230419.4,ENST00000345201.2	chr6	43097464:43097567:43097967:43098158:43098248:43098399,	43097968	43098158	43098042	43098063	Frame_Shift_Del	AGCGGAACCTGACGCTCCGGCC	-	p.E190fs
STAD	TCGA-FP-7829-01	CC2D1A	ENST00000587508.1,ENST00000589138.1,ENST00000589606.1,ENST00000586955.1,ENST00000589224.1,ENST00000318003.7	chr19	14034507:14034624:14037329:14037403:14037479:14037538,	14037330	14037403	14037368	14037369	Frame_Shift_Ins	-	TCATC	p.F660fs
STAD	TCGA-FP-8099-01	ZSCAN18	ENST00000600404.1,ENST00000594191.1,ENST00000240727.6,ENST00000601144.1	chr19	58598682:58598771:58600054:58600204:58601231:58601328,	58600055	58600204	58600101	58600102	Frame_Shift_Ins	-	G	p.P225fs
STAD	TCGA-FP-8211-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717666	89717667	Frame_Shift_Ins	-	C	p.G230fs
STAD	TCGA-FP-8211-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016973	1016974	Frame_Shift_Del	GT	-	p.T1943fs
STAD	TCGA-FP-8631-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799060	39799061	Frame_Shift_Ins	-	G	p.R707fs
STAD	TCGA-FP-A4BE-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
STAD	TCGA-FP-A4BE-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104629	26104630	Frame_Shift_Ins	-	G	p.P430fs
STAD	TCGA-FP-A4BE-01	RCC1	ENST00000373832.1	chr1	28844777:28844820:28856369:28856451:28858314:28858330,	28856370	28856451	28856410	28856411	Frame_Shift_Ins	-	C	p.S11fs
STAD	TCGA-FP-A4BE-01	USP21	ENST00000485277.1	chr1	161133957:161134040:161134323:161134732:161134818:161134933,	161134324	161134732	161134660	161134660	Frame_Shift_Del	A	-	p.I473fs
STAD	TCGA-FP-A4BE-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315787	208315788	Frame_Shift_Ins	-	GG	p.H465fs
STAD	TCGA-FP-A4BE-01	ST6GAL2	ENST00000409382.3	chr2	107450504:107450602:107459490:107460490:107502548:107503102,	107459491	107460490	107459971	107459971	Frame_Shift_Del	C	-	p.E155fs
STAD	TCGA-FP-A4BE-01	STK17B	ENST00000263955.4,ENST00000409228.1	chr2	197010634:197010779:197021162:197021375:197027985:197028151,	197021163	197021375	197021327	197021328	Frame_Shift_Ins	-	T	p.Q57fs
STAD	TCGA-FP-A4BE-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529514	219529515	Frame_Shift_Ins	-	C	p.G250fs
STAD	TCGA-FP-A4BE-01	HDLBP	ENST00000427487.1	chr2	242179225:242179235:242179315:242179579:242181874:242181955,	242179316	242179579	242179467	242179467	Frame_Shift_Del	C	-	p.G747fs
STAD	TCGA-FP-A4BE-01	HDLBP	ENST00000373292.4,ENST00000479169.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000459788.1,ENST00000310931.4	chr2	242179225:242179235:242179315:242179537:242181874:242181955,	242179316	242179537	242179467	242179467	Frame_Shift_Del	C	-	p.G747fs
STAD	TCGA-FP-A4BE-01	TMEM40	ENST00000476331.1,ENST00000428020.1,ENST00000435575.1,ENST00000480698.1,ENST00000435218.2,ENST00000264728.8,ENST00000431022.2,ENST00000314124.7	chr3	12776205:12776292:12777053:12777116:12778076:12778151,	12777054	12777116	12777078	12777078	Frame_Shift_Del	G	-	p.L236fs
STAD	TCGA-FP-A4BE-01	IFT122	ENST00000511498.1,ENST00000507564.1,ENST00000506507.1,ENST00000347300.2,ENST00000504021.1,ENST00000440957.2,ENST00000349441.2	chr3	129182402:129182469:129183477:129183624:129188184:129188260,	129183478	129183624	129183577	129183578	Frame_Shift_Ins	-	G	p.P223fs
STAD	TCGA-FP-A4BE-01	NCEH1	ENST00000424772.1,ENST00000538775.1	chr3	172363412:172363482:172365651:172365904:172428636:172428842,	172365652	172365904	172365826	172365827	Frame_Shift_Ins	-	T	p.S105fs
STAD	TCGA-FP-A4BE-01	NCEH1	ENST00000273512.3	chr3	172363412:172363482:172365675:172365904:172428636:172428842,	172365676	172365904	172365826	172365827	Frame_Shift_Ins	-	T	p.S105fs
STAD	TCGA-FP-A4BE-01	GRK4	ENST00000504933.1,ENST00000398052.4	chr4	2965587:2965849:2986239:2986335:2990453:2990566,	2986240	2986335	2986251	2986252	Frame_Shift_Ins	-	A	p.G21fs
STAD	TCGA-FP-A4BE-01	PRDM8	ENST00000515013.1,ENST00000504452.1,ENST00000339711.4,ENST00000415738.2	chr4	81118778:81118917:81121232:81121453:81122443:81122610,	81121233	81121453	81121308	81121309	Frame_Shift_Ins	-	T	p.I25fs
STAD	TCGA-FP-A4BE-01	AFF1	ENST00000511442.1,ENST00000507468.1,ENST00000395146.4,ENST00000503477.1	chr4	87928420:87928576:87967317:87967438:87967846:87968042,87869649:87869723:87967317:87967438:87967846:87968042,	87967318	87967438	87967391	87967392	Frame_Shift_Del	AA	-	p.E37fs
STAD	TCGA-FP-A4BE-01	ZNF608	ENST00000509799.1	chr5	124036706:124036962:124079776:124080865:124081887:124082320,124036706:124036962:124079776:124080865:124084225:124084500,	124079777	124080865	124079984	124079985	Frame_Shift_Ins	-	C	p.G233fs
STAD	TCGA-FP-A4BE-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855928	Frame_Shift_Ins	-	G	p.R297fs
STAD	TCGA-FP-A4BE-01	MEST	ENST00000463263.1,ENST00000223215.4,ENST00000416162.2,ENST00000341441.5,ENST00000378576.4,ENST00000393187.1	chr7	130142494:130142561:130143773:130143837:130144779:130145194,	130143774	130143837	130143794	130143795	Frame_Shift_Ins	-	T	p.P282fs
STAD	TCGA-FP-A4BE-01	EZH2	ENST00000460911.1,ENST00000478654.1,ENST00000476773.1,ENST00000350995.2,ENST00000492143.1,ENST00000320356.2,ENST00000541220.1,ENST00000483967.1	chr7	148504616:148504798:148506162:148506247:148506401:148506482,	148506163	148506247	148506210	148506210	Frame_Shift_Del	A	-	p.A712fs
STAD	TCGA-FP-A4BE-01	FASTK	ENST00000482806.1	chr7	150774077:150774114:150774187:150774488:150774707:150774867,	150774188	150774488	150774416	150774417	Frame_Shift_Del	CA	-	p.V424fs
STAD	TCGA-FP-A4BE-01	FASTK	ENST00000460980.1,ENST00000482571.1,ENST00000483953.1,ENST00000489884.1,ENST00000297532.6,ENST00000353841.2	chr7	150774187:150774323:150774396:150774488:150774707:150774867,	150774397	150774488	150774416	150774417	Frame_Shift_Del	CA	-	p.V424fs
STAD	TCGA-FP-A4BE-01	SLC26A7	ENST00000523719.1,ENST00000520249.1,ENST00000517930.1,ENST00000276609.3,ENST00000309536.2,ENST00000522181.1	chr8	92375699:92375766:92378807:92378945:92382012:92382061,	92378808	92378945	92378867	92378868	Frame_Shift_Ins	-	A	p.A516fs
STAD	TCGA-FP-A4BE-01	TRPS1	ENST00000520276.1,ENST00000517323.2	chr8	116616877:116617229:116631358:116632287:116680771:116680929,116616877:116617229:116631358:116632287:116680100:116680208,	116631359	116632287	116631682	116631683	Frame_Shift_Ins	-	T	p.T215fs
STAD	TCGA-FP-A4BE-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-FP-A4BE-01	CTR9	ENST00000361367.2	chr11	10784977:10785085:10785189:10785426:10785658:10785748,	10785190	10785426	10785262	10785263	Frame_Shift_Ins	-	T	p.P343fs
STAD	TCGA-FP-A4BE-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873961	76873962	Frame_Shift_Ins	-	C	p.I539fs
STAD	TCGA-FP-A4BE-01	BCL9L	ENST00000526143.1,ENST00000334801.3	chr11	118768454:118770217:118770625:118770907:118771327:118771470,	118770626	118770907	118770652	118770653	Frame_Shift_Ins	-	G	p.P1127fs
STAD	TCGA-FP-A4BE-01	LRIG3	ENST00000379141.4,ENST00000433272.2,ENST00000320743.3	chr12	59277301:59277373:59279612:59279684:59280591:59280672,	59279613	59279684	59279645	59279645	Frame_Shift_Del	T	-	p.A405fs
STAD	TCGA-FP-A4BE-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641029	96641030	Frame_Shift_Ins	-	C	p.S173fs
STAD	TCGA-FP-A4BE-01	ATXN2	ENST00000535949.1	chr12	111962995:111963120:111990083:111990234:111991961:111992021,	111990084	111990234	111990087	111990087	Frame_Shift_Del	T	-	p.R350fs
STAD	TCGA-FP-A4BE-01	TULP2	ENST00000221399.3	chr19	49388704:49388817:49391206:49391518:49392766:49392888,	49391207	49391518	49391245	49391246	Frame_Shift_Ins	-	G	p.L304fs
STAD	TCGA-FP-A4BE-01	FCGRT	ENST00000596975.1	chr19	50016660:50016730:50017138:50017390:50017467:50017541,50016453:50016500:50017138:50017390:50017467:50017566,50016660:50016730:50017138:50017390:50027763:50027825,	50017139	50017390	50017380	50017380	Frame_Shift_Del	G	-	p.L105fs
STAD	TCGA-FP-A4BE-01	FCGRT	ENST00000598936.1	chr19	50016660:50016730:50017138:50017743:50024951:50025070,	50017139	50017743	50017380	50017380	Frame_Shift_Del	G	-	p.L105fs
STAD	TCGA-FP-A4BE-01	ITPA	ENST00000460550.1	chr20	3189543:3189679:3193814:3193872:3193964:3194029,3190170:3190263:3193814:3193872:3194630:3194704,	3193815	3193872	3193863	3193864	Frame_Shift_Ins	-	A	p.Q38fs
STAD	TCGA-FP-A4BE-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581680	17581681	Frame_Shift_Ins	-	T	p.M100fs
STAD	TCGA-FP-A4BE-01	TPST2	ENST00000398110.2,ENST00000403880.1,ENST00000338754.4	chr22	26928660:26928711:26932253:26932452:26936754:26936837,	26932254	26932452	26932299	26932299	Frame_Shift_Del	G	-	p.N333fs
STAD	TCGA-FP-A4BF-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799060	39799061	Frame_Shift_Ins	-	G	p.R707fs
STAD	TCGA-FP-A4BF-01	MND1	ENST00000240488.3,ENST00000504860.1	chr4	154279625:154279774:154315413:154315488:154318370:154318485,	154315414	154315488	154315457	154315457	Frame_Shift_Del	T	-	p.I107fs
STAD	TCGA-HF-7132-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-HF-7132-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S161fs
STAD	TCGA-HF-7132-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S161fs
STAD	TCGA-HF-7132-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246391	154246391	Frame_Shift_Del	C	-	p.S161fs
STAD	TCGA-HF-7132-01	MBOAT2	ENST00000486484.1	chr2	9083315:9083393:9098625:9098771:9143668:9143787,	9098626	9098771	9098636	9098637	Frame_Shift_Ins	-	A	p.C71fs
STAD	TCGA-HF-7132-01	LRP1B	ENST00000389484.3	chr2	141747100:141747226:141751563:141751704:141762903:141763026,	141751564	141751704	141751637	141751638	Frame_Shift_Del	AC	-	p.C857fs
STAD	TCGA-HF-7132-01	WDFY3	ENST00000295888.4,ENST00000426414.2,ENST00000322366.6	chr4	85752565:85752758:85758081:85758243:85762306:85762416,	85758082	85758243	85758175	85758176	Frame_Shift_Ins	-	A	p.F161fs
STAD	TCGA-HF-7132-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864270	129864271	Frame_Shift_Ins	-	TC	p.N505fs
STAD	TCGA-HF-7132-01	MOCS2	ENST00000527216.1,ENST00000514553.2,ENST00000361377.4,ENST00000396954.3,ENST00000510818.2,ENST00000508922.1,ENST00000450852.3	chr5	52397926:52398054:52402906:52403051:52404351:52404473,	52402907	52403051	52402940	52402940	Frame_Shift_Del	G	-	p.P22fs
STAD	TCGA-HF-7132-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
STAD	TCGA-HF-7132-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
STAD	TCGA-HF-7132-01	ZNF346	ENST00000503425.1	chr5	176468126:176468230:176471392:176471534:176477751:176477893,	176471393	176471534	176471425	176471426	Frame_Shift_Ins	-	C	p.C161fs
STAD	TCGA-HF-7132-01	ZNF346	ENST00000511834.1	chr5	176468778:176468871:176471389:176471534:176477751:176477893,176468778:176468871:176471389:176471534:176477703:176477937,	176471390	176471534	176471425	176471426	Frame_Shift_Ins	-	C	p.C161fs
STAD	TCGA-HF-7132-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1,ENST00000417852.1	chr7	716865:716957:720192:720363:750965:751164,	720193	720363	720281	720281	Frame_Shift_Del	G	-	p.P87fs
STAD	TCGA-HF-7132-01	PRKDC	ENST00000338368.3,ENST00000518216.1,ENST00000523565.1,ENST00000314191.2,ENST00000536483.1	chr8	48686694:48686938:48689404:48689544:48690246:48690435,	48689405	48689544	48689518	48689519	Frame_Shift_Ins	-	T	p.K4022fs
STAD	TCGA-HF-7132-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091523	35091523	Frame_Shift_Del	G	-	p.T788fs
STAD	TCGA-HF-7132-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-HF-7132-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269737	1269737	Frame_Shift_Del	C	-	p.T3876fs
STAD	TCGA-HF-7132-01	FBXW8	ENST00000455858.2,ENST00000309909.5	chr12	117383168:117383333:117387422:117387511:117402501:117402659,	117387423	117387511	117387463	117387464	Frame_Shift_Del	AC	-	p.D210fs
STAD	TCGA-HF-7132-01	SAMD4A	ENST00000392067.3,ENST00000357634.3,ENST00000554335.1	chr14	55168779:55169298:55203741:55204005:55215532:55215642,	55203742	55204005	55203892	55203892	Frame_Shift_Del	C	-	p.A288fs
STAD	TCGA-HF-7132-01	RIN3	ENST00000418924.2,ENST00000555589.1,ENST00000216487.7	chr14	93107582:93107674:93117926:93119420:93125505:93125814,	93117927	93119420	93118772	93118773	Frame_Shift_Ins	-	C	p.P459fs
STAD	TCGA-HF-7132-01	ARHGAP11A	ENST00000563864.1	chr15	32921795:32921963:32925263:32925309:32926133:32926242,	32925264	32925309	32925296	32925297	Frame_Shift_Ins	-	A	p.G407fs
STAD	TCGA-HF-7132-01	ARHGAP11A	ENST00000565905.1,ENST00000543522.1,ENST00000567348.1,ENST00000361627.3	chr15	32921795:32921963:32925179:32925309:32926133:32926242,	32925180	32925309	32925296	32925297	Frame_Shift_Ins	-	A	p.G407fs
STAD	TCGA-HF-7132-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182636	59182637	Frame_Shift_Del	CT	-	p.E641fs
STAD	TCGA-HF-7132-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602811.1,ENST00000581941.1,ENST00000602537.1	chr17	11924292:11924318:11998891:11999011:12013691:12013743,11958205:11958308:11998891:11999011:12011106:12011226,11984672:11984847:11998891:11999011:12011106:12011226,	11998892	11999011	11998923	11998923	Frame_Shift_Del	A	-	p.Q142fs
STAD	TCGA-HF-7132-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
STAD	TCGA-HF-7132-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270150	66270151	Frame_Shift_Ins	-	C	p.G98fs
STAD	TCGA-HF-7132-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
STAD	TCGA-HF-7132-01	ST6GALNAC1	ENST00000156626.7,ENST00000590878.1,ENST00000359088.5	chr17	74623496:74623665:74625093:74625793:74639589:74639742,	74625094	74625793	74625215	74625215	Frame_Shift_Del	G	-	p.P237fs
STAD	TCGA-HF-7132-01	NOTCH3	ENST00000263388.2,ENST00000595514.1	chr19	15272435:15272525:15273275:15273373:15276178:15276301,	15273276	15273373	15273307	15273308	Frame_Shift_Ins	-	T	p.N1961fs
STAD	TCGA-HF-7132-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000473931.1,ENST00000375695.2	chrX	51641706:51641739:51643277:51643392:51644648:51645034,	51643278	51643392	51643311	51643312	Frame_Shift_Ins	-	C	p.N682fs
STAD	TCGA-HF-7136-01	ADCY2	ENST00000537121.1,ENST00000338316.4	chr5	7724657:7724727:7727276:7727374:7743780:7743865,	7727277	7727374	7727327	7727328	Frame_Shift_Del	TC	-	p.C608fs
STAD	TCGA-HJ-7597-01	CAPZB	ENST00000264203.3	chr1	19665852:19666111:19671680:19671746:19683128:19683245,	19671681	19671746	19671731	19671731	Frame_Shift_Del	T	-	p.T231fs
STAD	TCGA-HJ-7597-01	CYP4A11	ENST00000462347.1,ENST00000371905.1,ENST00000465874.1,ENST00000371904.4,ENST00000310638.4	chr1	47398432:47398509:47398654:47398719:47399617:47399677,	47398655	47398719	47398673	47398674	Frame_Shift_Del	TT	-	p.K423fs
STAD	TCGA-HJ-7597-01	CIB4	ENST00000403670.3	chr2	26806656:26806766:26818043:26818185:26852277:26852374,26806656:26806766:26818043:26818185:26828369:26828431,	26818044	26818185	26818155	26818156	Frame_Shift_Del	CT	-	p.V73fs
STAD	TCGA-HJ-7597-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005576	150005579	Frame_Shift_Del	CAGA	-	p.S216fs
STAD	TCGA-HJ-7597-01	KIAA1217	ENST00000438429.1	chr10	24544256:24544525:24669797:24669996:24721923:24722122,24508554:24508838:24669797:24669996:24721923:24722122,24528123:24528266:24669797:24669996:24721923:24722122,	24669798	24669996	24669980	24669983	Frame_Shift_Del	GAAA	-	p.T179fs
STAD	TCGA-HJ-7597-01	TRIM22	ENST00000425490.1	chr11	5711109:5711129:5717396:5717885:5719544:5719636,5711109:5711129:5717396:5717885:5718477:5718573,	5717397	5717885	5717765	5717765	Frame_Shift_Del	A	-	p.G101fs
STAD	TCGA-HJ-7597-01	THYN1	ENST00000392595.2,ENST00000392594.3,ENST00000341541.3	chr11	134118181:134118378:134118702:134118853:134119060:134119156,	134118703	134118853	134118753	134118753	Frame_Shift_Del	T	-	p.N194fs
STAD	TCGA-HJ-7597-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924044	Frame_Shift_Ins	-	G	p.Q164fs
STAD	TCGA-HJ-7597-01	KDM2B	ENST00000542973.1,ENST00000377071.4	chr12	121880794:121880833:121881482:121881596:121881814:121882018,	121881483	121881596	121881493	121881496	Frame_Shift_Del	AAGT	-	p.Y851fs
STAD	TCGA-HJ-7597-01	TPP2	ENST00000376065.4,ENST00000376052.3	chr13	103257142:103257271:103266450:103266546:103268745:103268850,	103266451	103266546	103266508	103266509	Frame_Shift_Del	TA	-	p.G117fs
STAD	TCGA-HJ-7597-01	G2E3	ENST00000544007.1	chr14	31070975:31071100:31071204:31071337:31077093:31077125,	31071205	31071337	31071299	31071302	Frame_Shift_Del	CAGA	-	p.P324fs
STAD	TCGA-HJ-7597-01	MGA	ENST00000564190.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42032254:42032401:42034743:42035370:42040834:42040910,	42034744	42035370	42034971	42034971	Frame_Shift_Del	T	-	p.V1604fs
STAD	TCGA-HJ-7597-01	BFAR	ENST00000566710.1,ENST00000261658.2,ENST00000426842.2	chr16	14738144:14738466:14748922:14749067:14755748:14755922,14743660:14743830:14748922:14749067:14755748:14755922,	14748923	14749067	14749041	14749042	Frame_Shift_Ins	-	C	p.K252fs
STAD	TCGA-HJ-7597-01	DHX58	ENST00000586522.1	chr17	40263313:40263515:40263763:40263911:40264130:40264217,	40263764	40263911	40263776	40263777	Frame_Shift_Del	CA	-	p.V45fs
STAD	TCGA-HJ-7597-01	DHX58	ENST00000413196.2,ENST00000251642.3,ENST00000430773.1	chr17	40263313:40263515:40263742:40263911:40264130:40264217,	40263743	40263911	40263776	40263777	Frame_Shift_Del	CA	-	p.V45fs
STAD	TCGA-HU-8245-01	RBM6	ENST00000422955.1,ENST00000425608.1,ENST00000434592.1	chr3	50009491:50009581:50012755:50012825:50085677:50085752,	50012756	50012825	50012778	50012779	Frame_Shift_Del	CT	-	p.P479fs
STAD	TCGA-HU-8245-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542718	114542719	Frame_Shift_Ins	-	C	p.G150fs
STAD	TCGA-HU-8602-01	GBP3	ENST00000235878.5,ENST00000370481.4,ENST00000493594.2	chr1	89477510:89477710:89478867:89479110:89479765:89479962,	89478868	89479110	89478904	89478905	Frame_Shift_Del	TA	-	p.K278fs
STAD	TCGA-HU-8602-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100376267:100376403:100377960:100378073:100379082:100379294,	100377961	100378073	100378028	100378029	Frame_Shift_Ins	-	A	p.S1301fs
STAD	TCGA-HU-8602-01	LPP	ENST00000448637.1,ENST00000543006.1,ENST00000312675.4	chr3	188242452:188242575:188326948:188327632:188426054:188426181,	188326949	188327632	188327441	188327442	Frame_Shift_Ins	-	G	p.Y307fs
STAD	TCGA-HU-8602-01	PTCD2	ENST00000503315.1,ENST00000486995.1,ENST00000460837.2,ENST00000308077.5,ENST00000510676.2,ENST00000380639.5,ENST00000503868.1,ENST00000543322.1,ENST00000536805.1	chr5	71638788:71638863:71648467:71648581:71654029:71654045,	71648468	71648581	71648518	71648518	Frame_Shift_Del	A	-	p.L293fs
STAD	TCGA-HU-8602-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496636	15496637	Frame_Shift_Ins	-	G	p.L393fs
STAD	TCGA-HU-8602-01	FOXP4	ENST00000373060.1,ENST00000307972.4,ENST00000373057.3	chr6	41557508:41557592:41557700:41557908:41558008:41558085,	41557701	41557908	41557781	41557781	Frame_Shift_Del	C	-	p.H410fs
STAD	TCGA-HU-8602-01	FOXP4	ENST00000409208.1,ENST00000373063.3	chr6	41557508:41557592:41557736:41557908:41558008:41558085,	41557737	41557908	41557781	41557781	Frame_Shift_Del	C	-	p.H410fs
STAD	TCGA-HU-8602-01	POLD2	ENST00000406581.2,ENST00000452185.1,ENST00000223361.3	chr7	44155467:44155492:44155713:44155871:44156028:44156109,	44155714	44155871	44155802	44155802	Frame_Shift_Del	G	-	p.L311fs
STAD	TCGA-HU-8602-01	POLD2	ENST00000436400.1	chr7	44155467:44155492:44155713:44155808:44156028:44156109,	44155714	44155808	44155802	44155802	Frame_Shift_Del	G	-	p.L311fs
STAD	TCGA-HU-8602-01	SLC30A8	ENST00000456015.2,ENST00000427715.2,ENST00000521243.1,ENST00000519688.1	chr8	118175667:118175769:118183272:118183407:118184774:118184974,	118183273	118183407	118183307	118183308	Frame_Shift_Del	AG	-	p.K288fs
STAD	TCGA-HU-8602-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-HU-8602-01	DLG5	ENST00000372391.2,ENST00000468332.2	chr10	79579652:79579776:79580839:79581859:79584141:79584234,	79580840	79581859	79581284	79581285	Frame_Shift_Ins	-	G	p.P986fs
STAD	TCGA-HU-8602-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282887	47282888	Frame_Shift_Ins	-	C	p.S198fs
STAD	TCGA-HU-8602-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.R731fs
STAD	TCGA-HU-8602-01	WDR20	ENST00000335263.5	chr14	102606317:102606509:102674939:102676199:102689166:102689695,102661282:102661457:102674939:102676199:102689166:102689695,	102674940	102676199	102675067	102675068	Frame_Shift_Ins	-	C	p.A218fs
STAD	TCGA-HU-8602-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.R1893fs
STAD	TCGA-HU-8602-01	TIMM44	ENST00000600748.1,ENST00000270538.3,ENST00000595831.1	chr19	7999949:8000030:8002911:8003082:8005986:8006082,	8002912	8003082	8002975	8002975	Frame_Shift_Del	T	-	p.F84fs
STAD	TCGA-HU-8602-01	RNF185	ENST00000468921.1	chr22	31556228:31556289:31583032:31583256:31588669:31588688,31578954:31579052:31583032:31583256:31588669:31588688,	31583033	31583256	31583132	31583133	Frame_Shift_Ins	-	G	p.A17fs
STAD	TCGA-HU-8602-01	PRKX	ENST00000262848.5,ENST00000425240.1	chrX	3539299:3539357:3544459:3544555:3559892:3560012,	3544460	3544555	3544540	3544540	Frame_Shift_Del	A	-	p.D246fs
STAD	TCGA-HU-A4G8-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521525	46521525	Frame_Shift_Del	T	-	p.M341fs
STAD	TCGA-HU-A4G8-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474068	Frame_Shift_Ins	-	C	p.G557fs
STAD	TCGA-HU-A4G8-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4G8-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4G8-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4G8-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852654:182852770:182853747:182853948:182856217:182856882,	182853748	182853948	182853931	182853932	Frame_Shift_Del	TA	-	p.L1148fs
STAD	TCGA-HU-A4G8-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658018	27658019	Frame_Shift_Ins	-	C	p.D195fs
STAD	TCGA-HU-A4G8-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168103737	168103737	Frame_Shift_Del	A	-	p.I1945fs
STAD	TCGA-HU-A4G8-01	OXNAD1	ENST00000544043.1,ENST00000606098.1,ENST00000285083.5,ENST00000435829.2,ENST00000605932.1,ENST00000442255.1,ENST00000452581.1	chr3	16327848:16327955:16336362:16336504:16343132:16343293,	16336363	16336504	16336481	16336482	Frame_Shift_Ins	-	C	p.P154fs
STAD	TCGA-HU-A4G8-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005145	50005146	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-HU-A4G8-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005145	50005146	Frame_Shift_Ins	-	G	p.R96fs
STAD	TCGA-HU-A4G8-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187541247	187541247	Frame_Shift_Del	A	-	p.S2165fs
STAD	TCGA-HU-A4G8-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-HU-A4G8-01	CYP21A2	ENST00000435122.2,ENST00000479074.1,ENST00000483041.1,ENST00000418967.2,ENST00000479730.1	chr6	32007541:32007612:32007781:32007982:32008182:32008361,	32007782	32007982	32007960	32007960	Frame_Shift_Del	T	-	p.V306fs
STAD	TCGA-HU-A4G8-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263965	33263966	Frame_Shift_Ins	-	C	p.G203fs
STAD	TCGA-HU-A4G8-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167473	24167474	Frame_Shift_Ins	-	A	p.L72fs
STAD	TCGA-HU-A4G8-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128856	68128857	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-HU-A4G8-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21971089	21971090	Frame_Shift_Ins	-	A	p.F90fs
STAD	TCGA-HU-A4G8-01	CDKN2A	ENST00000530628.2	chr9	21968180:21968241:21970974:21971207:21974676:21974857,21968180:21968241:21970974:21971207:21994137:21994410,	21970975	21971207	21971089	21971090	Frame_Shift_Ins	-	A	p.F90fs
STAD	TCGA-HU-A4G8-01	UBAP1	ENST00000543944.1	chr9	34234213:34234338:34241182:34242106:34249776:34249959,34220905:34220946:34241182:34242106:34249776:34249959,	34241183	34242106	34241785	34241785	Frame_Shift_Del	C	-	p.L254fs
STAD	TCGA-HU-A4G8-01	ASS1	ENST00000372394.1,ENST00000372393.3,ENST00000422569.1,ENST00000443588.1,ENST00000352480.5	chr9	133327650:133327720:133329691:133329760:133333787:133333976,	133329692	133329760	133329755	133329755	Frame_Shift_Del	A	-	p.A132fs
STAD	TCGA-HU-A4G8-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61834217	61834218	Frame_Shift_Ins	-	G	p.P2141fs
STAD	TCGA-HU-A4G8-01	DDX50	ENST00000471475.1,ENST00000373585.3,ENST00000483593.1	chr10	70670062:70670138:70670823:70671002:70672917:70672986,	70670824	70671002	70670982	70670983	Frame_Shift_Ins	-	A	p.I206fs
STAD	TCGA-HU-A4G8-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525560	75525561	Frame_Shift_Ins	-	C	p.V456fs
STAD	TCGA-HU-A4G8-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
STAD	TCGA-HU-A4G8-01	KBTBD4	ENST00000533290.1,ENST00000526005.1,ENST00000430070.2,ENST00000395288.2	chr11	47593778:47595342:47597144:47597251:47598962:47599576,	47597145	47597251	47597166	47597167	Frame_Shift_Del	CT	-	p.E225fs
STAD	TCGA-HU-A4G8-01	SF1	ENST00000486960.1,ENST00000334944.5,ENST00000227503.9,ENST00000448404.1,ENST00000422298.2,ENST00000433274.2,ENST00000377387.1,ENST00000377394.3,ENST00000377390.3	chr11	64536749:64536810:64536897:64537081:64537435:64537525,	64536898	64537081	64537024	64537024	Frame_Shift_Del	C	-	p.K180fs
STAD	TCGA-HU-A4G8-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
STAD	TCGA-HU-A4G8-01	CLEC4A	ENST00000360500.3	chr12	8278156:8278273:8281859:8281958:8288180:8288332,8276507:8276556:8281859:8281958:8288180:8288332,	8281860	8281958	8281890	8281890	Frame_Shift_Del	A	-	p.E77fs
STAD	TCGA-HU-A4G8-01	PWP1	ENST00000541166.1,ENST00000547120.1,ENST00000412830.3,ENST00000552760.1	chr12	108086776:108086873:108090250:108090361:108091243:108091355,	108090251	108090361	108090314	108090317	Frame_Shift_Del	TGAG	-	p.L189fs
STAD	TCGA-HU-A4G8-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174185	105174185	Frame_Shift_Del	C	-	p.S527fs
STAD	TCGA-HU-A4G8-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43748661	43748661	Frame_Shift_Del	T	-	p.E711fs
STAD	TCGA-HU-A4G8-01	WDR90	ENST00000549091.1,ENST00000548844.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1,ENST00000552943.1	chr16	708895:709011:709085:709126:709244:709376,	709086	709126	709106	709107	Frame_Shift_Ins	-	C	p.A1011fs
STAD	TCGA-HU-A4G8-01	UMOD	ENST00000424589.1,ENST00000570689.1,ENST00000396142.2,ENST00000396138.4,ENST00000396134.2,ENST00000302509.4	chr16	20348612:20348775:20352412:20352658:20355345:20355448,	20352413	20352658	20352438	20352439	Frame_Shift_Ins	-	G	p.L551fs
STAD	TCGA-HU-A4G8-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736372	Frame_Shift_Ins	-	C	p.Q1875fs
STAD	TCGA-HU-A4G8-01	TAF1C	ENST00000544090.1,ENST00000341690.6	chr16	84212727:84213457:84213551:84213686:84213775:84213934,	84213552	84213686	84213651	84213652	Frame_Shift_Ins	-	G	p.Q534fs
STAD	TCGA-HU-A4G8-01	TAF1C	ENST00000570117.1,ENST00000566732.1,ENST00000564774.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000564208.1	chr16	84212727:84213457:84213551:84213689:84213775:84213934,	84213552	84213689	84213651	84213652	Frame_Shift_Ins	-	G	p.Q534fs
STAD	TCGA-HU-A4G8-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P596fs
STAD	TCGA-HU-A4G8-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270150	66270150	Frame_Shift_Del	C	-	p.L99fs
STAD	TCGA-HU-A4G8-01	PIGT	ENST00000535404.1,ENST00000341555.5,ENST00000279036.6,ENST00000543458.2,ENST00000279035.9,ENST00000545755.1,ENST00000455050.2	chr20	44049215:44049333:44050022:44050223:44052855:44053021,	44050023	44050223	44050026	44050027	Frame_Shift_Ins	-	C	p.A346fs
STAD	TCGA-HU-A4G8-01	COL6A1	ENST00000486023.1,ENST00000361866.3,ENST00000498614.1	chr21	47422440:47422624:47423033:47423063:47423304:47424020,	47423034	47423063	47423059	47423060	Frame_Shift_Ins	-	C	p.C820fs
STAD	TCGA-HU-A4G8-01	OSBP2	ENST00000535268.1,ENST00000452656.1,ENST00000382310.3,ENST00000332585.6,ENST00000407373.1,ENST00000401475.1,ENST00000431368.1,ENST00000446658.2,ENST00000437268.2,ENST00000403222.3	chr22	31286935:31286960:31289108:31289229:31289449:31289553,	31289109	31289229	31289120	31289121	Frame_Shift_Ins	-	C	p.H627fs
STAD	TCGA-HU-A4G8-01	FANCB	ENST00000452869.1,ENST00000324138.3,ENST00000398334.1	chrX	14862624:14862862:14862977:14863408:14868626:14868796,	14862978	14863408	14863040	14863041	Frame_Shift_Ins	-	A	p.L622fs
STAD	TCGA-HU-A4G9-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Ins	-	AG	p.D311fs
STAD	TCGA-HU-A4G9-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1158fs
STAD	TCGA-HU-A4G9-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634231	84634232	Frame_Shift_Ins	-	A	p.Q245fs
STAD	TCGA-HU-A4G9-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899921	Frame_Shift_Ins	-	A	p.D131fs
STAD	TCGA-HU-A4G9-01	TFEC	ENST00000457268.1,ENST00000265440.7,ENST00000320239.7,ENST00000393485.1,ENST00000484212.1	chr7	115590927:115591003:115594639:115594696:115596732:115596847,	115594640	115594696	115594657	115594657	Frame_Shift_Del	T	-	p.K141fs
STAD	TCGA-HU-A4G9-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525560	75525561	Frame_Shift_Ins	-	C	p.V456fs
STAD	TCGA-HU-A4G9-01	DAO	ENST00000547166.1,ENST00000228476.3	chr12	109281225:109281340:109283244:109283321:109283983:109284049,	109283245	109283321	109283288	109283289	Frame_Shift_Ins	-	C	p.T118fs
STAD	TCGA-HU-A4G9-01	LONP2	ENST00000285737.4,ENST00000535754.1,ENST00000416006.3	chr16	48295334:48295498:48296688:48296783:48303926:48304185,	48296689	48296783	48296693	48296693	Frame_Shift_Del	A	-	p.L297fs
STAD	TCGA-HU-A4G9-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532525	3532525	Frame_Shift_Del	G	-	p.S373fs
STAD	TCGA-HU-A4G9-01	RYR1	ENST00000359596.3,ENST00000355481.4,ENST00000360985.3	chr19	39066558:39066601:39068557:39068688:39068783:39068844,	39068558	39068688	39068675	39068676	Frame_Shift_Ins	-	G	p.P4763fs
STAD	TCGA-HU-A4GF-01	HIP1R	ENST00000535012.1,ENST00000536617.1,ENST00000253083.4	chr12	123345677:123345739:123345854:123346061:123346252:123346631,	123345855	123346061	123345887	123345888	Frame_Shift_Ins	-	G	p.E995fs
STAD	TCGA-HU-A4GF-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967247	64967248	Frame_Shift_Ins	-	A	p.D731fs
STAD	TCGA-HU-A4GH-01	HECTD2	ENST00000371667.1,ENST00000446394.1,ENST00000298068.5	chr10	93244936:93245060:93247438:93247535:93250956:93251064,	93247439	93247535	93247481	93247482	Frame_Shift_Ins	-	A	p.A383fs
STAD	TCGA-HU-A4GN-01	SLC2A5	ENST00000486632.1,ENST00000484798.1,ENST00000487835.1,ENST00000377424.4,ENST00000377414.3,ENST00000474145.1,ENST00000479813.1	chr1	9101916:9101996:9107668:9107793:9117506:9117667,	9107669	9107793	9107765	9107766	Frame_Shift_Del	AT	-	p.F108fs
STAD	TCGA-HU-A4GN-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
STAD	TCGA-HU-A4GN-01	ATP13A2	ENST00000341676.5,ENST00000326735.8,ENST00000452699.1	chr1	17320123:17320330:17322470:17322659:17322748:17322778,	17322471	17322659	17322499	17322499	Frame_Shift_Del	C	-	p.G505fs
STAD	TCGA-HU-A4GN-01	FDPS	ENST00000447866.1,ENST00000468479.1,ENST00000491013.1,ENST00000467076.1,ENST00000492887.1,ENST00000477057.1,ENST00000356657.6,ENST00000368356.4,ENST00000492244.1	chr1	155287978:155288082:155288455:155288544:155288646:155288696,	155288456	155288544	155288502	155288503	Frame_Shift_Ins	-	CC	p.A244fs
STAD	TCGA-HU-A4GN-01	FAM98A	ENST00000238823.8,ENST00000403368.1	chr2	33812306:33812387:33813401:33813586:33817146:33817281,	33813402	33813586	33813525	33813526	Frame_Shift_Ins	-	T	p.K133fs
STAD	TCGA-HU-A4GN-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763924	74763925	Frame_Shift_Ins	-	C	p.G275fs
STAD	TCGA-HU-A4GN-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954221	240954222	Frame_Shift_Ins	-	G	p.H242fs
STAD	TCGA-HU-A4GN-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954221	240954222	Frame_Shift_Ins	-	G	p.H242fs
STAD	TCGA-HU-A4GN-01	PAPSS1	ENST00000511304.1,ENST00000265174.4	chr4	108575850:108576056:108578051:108578163:108581114:108581228,	108578052	108578163	108578093	108578094	Frame_Shift_Del	CT	-	p.R285fs
STAD	TCGA-HU-A4GN-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627690	137627690	Frame_Shift_Del	T	-	p.K322fs
STAD	TCGA-HU-A4GN-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496722	15496722	Frame_Shift_Del	G	-	p.V422fs
STAD	TCGA-HU-A4GN-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
STAD	TCGA-HU-A4GN-01	PLAU	ENST00000372762.4,ENST00000446342.1,ENST00000372764.3	chr10	75673047:75673139:75673296:75673516:75673737:75673886,	75673297	75673516	75673438	75673439	Frame_Shift_Ins	-	G	p.R201fs
STAD	TCGA-HU-A4GN-01	TAOK3	ENST00000537305.1,ENST00000419821.2,ENST00000392533.3	chr12	118636855:118637062:118639100:118639268:118650718:118650800,	118639101	118639268	118639157	118639158	Frame_Shift_Ins	-	T	p.I311fs
STAD	TCGA-HU-A4GN-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562545	32562546	Frame_Shift_Ins	-	T	p.D890fs
STAD	TCGA-HU-A4GN-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000553360.1,ENST00000395314.3,ENST00000459737.1,ENST00000555164.1,ENST00000395308.1,ENST00000395311.1	chr14	56119567:56119658:56119734:56119803:56120276:56120314,	56119735	56119803	56119761	56119762	Frame_Shift_Ins	-	A	p.L907fs
STAD	TCGA-HU-A4GN-01	OTX2	ENST00000339475.5,ENST00000554845.1	chr14	57268832:57269073:57270905:57271081:57272077:57272293,	57270906	57271081	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-HU-A4GN-01	OTX2	ENST00000555804.1,ENST00000555006.1,ENST00000408990.3	chr14	57268832:57269073:57270905:57271057:57272077:57272293,	57270906	57271057	57271049	57271049	Frame_Shift_Del	G	-	p.R44fs
STAD	TCGA-HU-A4GN-01	FUT8	ENST00000394586.2,ENST00000557164.1,ENST00000360689.5,ENST00000358307.2,ENST00000394585.1	chr14	66188492:66188739:66190864:66191041:66199948:66200099,	66190865	66191041	66190983	66190984	Frame_Shift_Ins	-	A	p.D400fs
STAD	TCGA-HU-A4GN-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000413546.1,ENST00000382039.3,ENST00000411772.1	chr15	43730521:43730614:43733723:43733781:43738584:43738788,	43733724	43733781	43733757	43733757	Frame_Shift_Del	T	-	p.N1017fs
STAD	TCGA-HU-A4GN-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-HU-A4GN-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-HU-A4GN-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-HU-A4GN-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.M84fs
STAD	TCGA-HU-A4GN-01	GSPT1	ENST00000434724.2,ENST00000563468.1,ENST00000439887.2,ENST00000420576.2	chr16	11966975:11967028:11969617:11969786:11971263:11971437,11966975:11967028:11969617:11969786:11969942:11970032,	11969618	11969786	11969760	11969760	Frame_Shift_Del	T	-	p.S436fs
STAD	TCGA-HU-A4GN-01	PAFAH1B1	ENST00000397195.5,ENST00000397193.3,ENST00000571495.1	chr17	2577353:2577582:2579798:2579900:2583457:2583475,	2579799	2579900	2579802	2579802	Frame_Shift_Del	A	-	p.T301fs
STAD	TCGA-HU-A4GN-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128959	46128960	Frame_Shift_Ins	-	C	p.A160fs
STAD	TCGA-HU-A4GN-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128959	46128960	Frame_Shift_Ins	-	C	p.A160fs
STAD	TCGA-HU-A4GN-01	SAFB2	ENST00000252542.4	chr19	5593901:5594189:5595371:5595508:5598803:5598895,	5595372	5595508	5595419	5595420	Frame_Shift_Del	CT	-	p.E624fs
STAD	TCGA-HU-A4GN-01	FARSA	ENST00000586280.1,ENST00000588965.1,ENST00000314606.4,ENST00000592662.1,ENST00000586146.1,ENST00000588025.1	chr19	13039568:13039661:13041036:13041155:13041242:13041341,	13041037	13041155	13041103	13041104	Frame_Shift_Ins	-	C	p.G146fs
STAD	TCGA-HU-A4GP-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095415	143095416	Frame_Shift_Ins	-	T	p.K154fs
STAD	TCGA-HU-A4GP-01	RRBP1	ENST00000246043.4,ENST00000377807.2,ENST00000455029.2,ENST00000377813.1,ENST00000360807.4	chr20	17617221:17617374:17622441:17622564:17623623:17623772,	17622442	17622564	17622546	17622547	Frame_Shift_Ins	-	GGTC	p.P261fs
STAD	TCGA-HU-A4GQ-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048809	42048809	Frame_Shift_Del	G	-	p.H554fs
STAD	TCGA-HU-A4GQ-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530507	Frame_Shift_Ins	-	G	p.F777fs
STAD	TCGA-HU-A4GQ-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761536	156761537	Frame_Shift_Ins	-	C	p.V377fs
STAD	TCGA-HU-A4GQ-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654711	167654712	Frame_Shift_Ins	-	C	p.F54fs
STAD	TCGA-HU-A4GQ-01	NAV1	ENST00000367302.1	chr1	201598531:201598635:201617761:201618553:201681944:201682047,	201617762	201618553	201618272	201618273	Frame_Shift_Ins	-	C	p.T159fs
STAD	TCGA-HU-A4GQ-01	SMYD2	ENST00000491455.1,ENST00000366957.5,ENST00000471645.1,ENST00000415093.2	chr1	214478534:214478593:214488104:214488215:214491421:214491482,	214488105	214488215	214488156	214488157	Frame_Shift_Ins	-	G	p.F96fs
STAD	TCGA-HU-A4GQ-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323947	235323948	Frame_Shift_Ins	-	T	p.T82fs
STAD	TCGA-HU-A4GQ-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025921	97025922	Frame_Shift_Ins	-	A	p.T466fs
STAD	TCGA-HU-A4GQ-01	RABL2A	ENST00000452831.1	chr2	114391733:114391809:114398929:114399027:114399357:114399441,114392627:114392707:114398929:114399027:114399357:114399441,	114398930	114399027	114398948	114398948	Frame_Shift_Del	A	-	p.Q143fs
STAD	TCGA-HU-A4GQ-01	RABL2A	ENST00000450954.1	chr2	114392627:114392707:114398929:114399057:114399357:114399441,	114398930	114399057	114398948	114398948	Frame_Shift_Del	A	-	p.Q143fs
STAD	TCGA-HU-A4GQ-01	PXK	ENST00000383715.4,ENST00000302779.5,ENST00000356151.2,ENST00000484288.1,ENST00000479241.1	chr3	58318713:58318817:58368240:58368427:58376308:58376386,58355157:58355205:58368240:58368427:58376308:58376386,	58368241	58368427	58368271	58368272	Frame_Shift_Ins	-	A	p.P77fs
STAD	TCGA-HU-A4GQ-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413710	138413711	Frame_Shift_Ins	-	G	p.R604fs
STAD	TCGA-HU-A4GQ-01	NCEH1	ENST00000424772.1,ENST00000538775.1	chr3	172363412:172363482:172365651:172365904:172428636:172428842,	172365652	172365904	172365826	172365827	Frame_Shift_Ins	-	T	p.S105fs
STAD	TCGA-HU-A4GQ-01	NCEH1	ENST00000273512.3	chr3	172363412:172363482:172365675:172365904:172428636:172428842,	172365676	172365904	172365826	172365827	Frame_Shift_Ins	-	T	p.S105fs
STAD	TCGA-HU-A4GQ-01	DHX15	ENST00000336812.4	chr4	24544562:24544649:24550477:24550645:24556347:24556566,	24550478	24550645	24550502	24550503	Frame_Shift_Ins	-	T	p.K408fs
STAD	TCGA-HU-A4GQ-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
STAD	TCGA-HU-A4GQ-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
STAD	TCGA-HU-A4GQ-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627690	137627690	Frame_Shift_Del	T	-	p.K322fs
STAD	TCGA-HU-A4GQ-01	KDM3B	ENST00000507996.1,ENST00000510866.1,ENST00000394866.1,ENST00000314358.5,ENST00000542866.1	chr5	137754641:137754921:137756394:137756651:137759763:137760030,	137756395	137756651	137756625	137756625	Frame_Shift_Del	C	-	p.F1315fs
STAD	TCGA-HU-A4GQ-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496636	15496636	Frame_Shift_Del	G	-	p.L393fs
STAD	TCGA-HU-A4GQ-01	NOTCH4	ENST00000375023.3,ENST00000473562.1	chr6	32187905:32188061:32188181:32188418:32188532:32188655,	32188182	32188418	32188295	32188296	Frame_Shift_Ins	-	C	p.G349fs
STAD	TCGA-HU-A4GQ-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000444031.2	chr6	33263416:33263536:33263804:33264102:33264190:33264241,	33263805	33264102	33263965	33263966	Frame_Shift_Ins	-	C	p.G203fs
STAD	TCGA-HU-A4GQ-01	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081696	144081697	Frame_Shift_Ins	-	A	p.I204fs
STAD	TCGA-HU-A4GQ-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673000	151673001	Frame_Shift_Ins	-	C	p.I1158fs
STAD	TCGA-HU-A4GQ-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485489	Frame_Shift_Ins	-	G	p.T1314fs
STAD	TCGA-HU-A4GQ-01	SYBU	ENST00000532594.1	chr8	110592164:110592231:110598245:110598391:110620139:110620228,	110598246	110598391	110598314	110598315	Frame_Shift_Ins	-	T	p.S169fs
STAD	TCGA-HU-A4GQ-01	SYBU	ENST00000533394.1	chr8	110592164:110592231:110598288:110598391:110631070:110631268,110592164:110592231:110598288:110598391:110620139:110620228,110592164:110592231:110598288:110598391:110615585:110615683,	110598289	110598391	110598314	110598315	Frame_Shift_Ins	-	T	p.S169fs
STAD	TCGA-HU-A4GQ-01	PLIN2	ENST00000276914.2	chr9	19118318:19118453:19119647:19119829:19120877:19121163,	19119648	19119829	19119689	19119690	Frame_Shift_Ins	-	T	p.S246fs
STAD	TCGA-HU-A4GQ-01	POLE3	ENST00000374169.3,ENST00000374171.4,ENST00000475080.1	chr9	116171223:116171263:116171889:116172008:116172334:116172420,	116171890	116172008	116171910	116171911	Frame_Shift_Ins	-	G	p.P84fs
STAD	TCGA-HU-A4GQ-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-HU-A4GQ-01	INPP5A	ENST00000342652.6,ENST00000368593.3,ENST00000368594.3	chr10	134463921:134464009:134503895:134503959:134511319:134511423,	134503896	134503959	134503931	134503931	Frame_Shift_Del	A	-	p.L114fs
STAD	TCGA-HU-A4GQ-01	AMPD3	ENST00000529834.1,ENST00000524866.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000534047.1	chr11	10483061:10483287:10500072:10500277:10503609:10503715,	10500073	10500277	10500145	10500146	Frame_Shift_Ins	-	C	p.G107fs
STAD	TCGA-HU-A4GQ-01	CCDC73	ENST00000335185.5	chr11	32632677:32632811:32634967:32636488:32637485:32637675,	32634968	32636488	32635393	32635393	Frame_Shift_Del	T	-	p.N824fs
STAD	TCGA-HU-A4GQ-01	TDG	ENST00000544861.1	chr12	104359680:104359838:104373608:104373850:104374670:104374740,	104373609	104373850	104373688	104373689	Frame_Shift_Ins	-	A	p.S82fs
STAD	TCGA-HU-A4GQ-01	IPO5	ENST00000490680.1,ENST00000469360.1,ENST00000491555.1,ENST00000357602.3,ENST00000539640.1,ENST00000261574.5	chr13	98667979:98668035:98668982:98669105:98670738:98670958,	98668983	98669105	98669010	98669011	Frame_Shift_Del	AA	-	p.T858fs
STAD	TCGA-HU-A4GQ-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560445	32560446	Frame_Shift_Ins	-	A	p.S190fs
STAD	TCGA-HU-A4GQ-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021239	23021240	Frame_Shift_Ins	-	T	p.K33fs
STAD	TCGA-HU-A4GQ-01	AQR	ENST00000543879.2,ENST00000156471.5	chr15	35234212:35234281:35236488:35236629:35240464:35240585,	35236489	35236629	35236513	35236514	Frame_Shift_Ins	-	A	p.F149fs
STAD	TCGA-HU-A4GQ-01	DMXL2	ENST00000560421.1,ENST00000543779.2,ENST00000449909.3,ENST00000251076.5	chr15	51856321:51856457:51857284:51857363:51860683:51860755,	51857285	51857363	51857323	51857324	Frame_Shift_Ins	-	A	p.L109fs
STAD	TCGA-HU-A4GQ-01	IL16	ENST00000302987.4,ENST00000394660.2,ENST00000360547.5,ENST00000560241.1,ENST00000559388.1,ENST00000559383.1	chr15	81561878:81561989:81565430:81565545:81571157:81571231,	81565431	81565545	81565501	81565502	Frame_Shift_Ins	-	T	p.I249fs
STAD	TCGA-HU-A4GQ-01	PDE8A	ENST00000478717.1,ENST00000557954.1,ENST00000339708.5,ENST00000310298.4,ENST00000394553.1,ENST00000485596.1,ENST00000558543.1,ENST00000560789.1,ENST00000557819.2,ENST00000557957.1,ENST00000559742.1	chr15	85643386:85643429:85652283:85652361:85656607:85656631,	85652284	85652361	85652315	85652315	Frame_Shift_Del	A	-	p.R356fs
STAD	TCGA-HU-A4GQ-01	PPP4C	ENST00000279387.7,ENST00000563732.1,ENST00000561610.1,ENST00000563597.1	chr16	30093804:30093855:30094714:30094888:30094975:30095101,30094066:30094168:30094714:30094888:30094975:30095101,	30094715	30094888	30094825	30094826	Frame_Shift_Del	TG	-	p.T138fs
STAD	TCGA-HU-A4GQ-01	PRSS36	ENST00000268281.4,ENST00000562368.1,ENST00000569305.1	chr16	31151621:31151736:31151812:31152078:31152789:31152931,	31151813	31152078	31151942	31151942	Frame_Shift_Del	G	-	p.L680fs
STAD	TCGA-HU-A4GQ-01	OSBPL7	ENST00000392507.3,ENST00000007414.3	chr17	45890952:45891200:45891886:45891980:45892580:45892718,	45891887	45891980	45891907	45891908	Frame_Shift_Ins	-	C	p.G444fs
STAD	TCGA-HU-A4GQ-01	C17orf80	ENST00000255557.4,ENST00000268942.8,ENST00000577615.1	chr17	71229364:71229464:71231614:71233134:71238382:71238490,71229364:71229464:71231614:71233134:71239034:71239142,	71231615	71233134	71232985	71232986	Frame_Shift_Del	CT	-	p.T455fs
STAD	TCGA-HU-A4GQ-01	NARS	ENST00000586807.1,ENST00000256854.5,ENST00000423481.2	chr18	55273847:55273983:55274365:55274565:55274675:55274715,	55274366	55274565	55274480	55274481	Frame_Shift_Ins	-	A	p.L296fs
STAD	TCGA-HU-A4GT-01	AGRN	ENST00000379370.2	chr1	978917:979112:979202:979403:979488:979637,	979203	979403	979279	979279	Frame_Shift_Del	C	-	p.H625fs
STAD	TCGA-HU-A4GT-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39797892	39797893	Frame_Shift_Ins	-	A	p.H317fs
STAD	TCGA-HU-A4GT-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449753	155449754	Frame_Shift_Ins	-	T	p.I970fs
STAD	TCGA-HU-A4GT-01	IPO9	ENST00000361565.4,ENST00000464348.1	chr1	201816679:201816766:201817520:201817722:201821231:201821320,	201817521	201817722	201817523	201817524	Frame_Shift_Ins	-	A	p.A105fs
STAD	TCGA-HU-A4GT-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204210502:204210609:204210812:204210942:204213991:204214131,	204210813	204210942	204210880	204210881	Frame_Shift_Ins	-	G	p.P745fs
STAD	TCGA-HU-A4GT-01	ARID4B	ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000471257.1,ENST00000264183.3,ENST00000491632.1,ENST00000444620.1	chr1	235344899:235346108:235357327:235357526:235359345:235359430,	235357328	235357526	235357477	235357478	Frame_Shift_Ins	-	T	p.N659fs
STAD	TCGA-HU-A4GT-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977674	99977675	Frame_Shift_Ins	-	A	p.G103fs
STAD	TCGA-HU-A4GT-01	NRP2	ENST00000412873.2,ENST00000540841.1,ENST00000540178.1,ENST00000272849.3,ENST00000357118.4,ENST00000357785.5,ENST00000360409.3	chr2	206617558:206617699:206628397:206628660:206630197:206630294,	206628398	206628660	206628532	206628533	Frame_Shift_Ins	-	G	p.R726fs
STAD	TCGA-HU-A4GT-01	HDLBP	ENST00000427487.1	chr2	242179225:242179235:242179315:242179579:242181874:242181955,	242179316	242179579	242179467	242179467	Frame_Shift_Del	C	-	p.G747fs
STAD	TCGA-HU-A4GT-01	HDLBP	ENST00000373292.4,ENST00000479169.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000459788.1,ENST00000310931.4	chr2	242179225:242179235:242179315:242179537:242181874:242181955,	242179316	242179537	242179467	242179467	Frame_Shift_Del	C	-	p.G747fs
STAD	TCGA-HU-A4GT-01	TTLL3	ENST00000427220.1	chr3	9857757:9857886:9859328:9859443:9860238:9860604,	9859329	9859443	9859428	9859429	Frame_Shift_Ins	-	A	p.D138fs
STAD	TCGA-HU-A4GT-01	WDR49	ENST00000453925.2,ENST00000472600.1,ENST00000308378.3,ENST00000476376.1	chr3	167217940:167218087:167223094:167223204:167240102:167240173,	167223095	167223204	167223102	167223102	Frame_Shift_Del	T	-	p.S608fs
STAD	TCGA-HU-A4GT-01	TRIO	ENST00000513206.1,ENST00000344204.4	chr5	14485284:14485355:14487572:14488369:14492675:14492923,	14487573	14488369	14488156	14488157	Frame_Shift_Ins	-	CC	p.F2473fs
STAD	TCGA-HU-A4GT-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-HU-A4GT-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.A64fs
STAD	TCGA-HU-A4GT-01	SIRT5	ENST00000359782.3,ENST00000379262.4,ENST00000606117.1	chr6	13584307:13584457:13588562:13588696:13591900:13592126,	13588563	13588696	13588583	13588584	Frame_Shift_Ins	-	T	p.K45fs
STAD	TCGA-HU-A4GT-01	SAMD3	ENST00000368134.2,ENST00000457563.2,ENST00000439090.2,ENST00000437477.2	chr6	130466484:130466567:130467154:130467326:130475969:130475998,	130467155	130467326	130467188	130467189	Frame_Shift_Ins	-	T	p.M388fs
STAD	TCGA-HU-A4GT-01	TRIP6	ENST00000437505.1	chr7	100465015:100465228:100465729:100465855:100466116:100466488,	100465730	100465855	100465746	100465746	Frame_Shift_Del	G	-	p.R85fs
STAD	TCGA-HU-A4GT-01	CSGALNACT1	ENST00000397998.3,ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000519222.1	chr8	19315936:19316153:19362711:19363641:19459281:19459376,	19362712	19363641	19363163	19363164	Frame_Shift_Ins	-	A	p.L61fs
STAD	TCGA-HU-A4GT-01	MYBL1	ENST00000522677.3,ENST00000524176.2	chr8	67485598:67485741:67488241:67488610:67492367:67492598,	67488242	67488610	67488453	67488454	Frame_Shift_Ins	-	T	p.N420fs
STAD	TCGA-HU-A4GT-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128856	68128857	Frame_Shift_Ins	-	G	p.P1552fs
STAD	TCGA-HU-A4GT-01	CDC37L1	ENST00000381854.3,ENST00000381858.1	chr9	4684876:4685158:4688512:4688606:4697095:4697211,	4688513	4688606	4688589	4688589	Frame_Shift_Del	A	-	p.Q164fs
STAD	TCGA-HU-A4GT-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
STAD	TCGA-HU-A4GT-01	BICD1	ENST00000395758.3,ENST00000281474.5,ENST00000548411.1	chr12	32458630:32459056:32480394:32481489:32487449:32487601,	32480395	32481489	32480463	32480464	Frame_Shift_Ins	-	G	p.K358fs
STAD	TCGA-HU-A4GT-01	MON2	ENST00000393629.2,ENST00000393630.3,ENST00000552738.1,ENST00000546600.1,ENST00000547095.1,ENST00000280379.6,ENST00000393632.2	chr12	62949773:62949972:62954270:62954893:62959016:62959160,	62954271	62954893	62954330	62954331	Frame_Shift_Ins	-	A	p.S1156fs
STAD	TCGA-HU-A4GT-01	TDRD3	ENST00000377881.2,ENST00000377894.2,ENST00000196169.3,ENST00000535286.1	chr13	61084763:61084889:61102500:61103351:61109241:61109367,	61102501	61103351	61102848	61102849	Frame_Shift_Ins	-	A	p.F403fs
STAD	TCGA-HU-A4GT-01	EIF3J	ENST00000536248.1,ENST00000261868.5,ENST00000424492.3	chr15	44846821:44846865:44849686:44849848:44852446:44852520,	44849687	44849848	44849811	44849812	Frame_Shift_Ins	-	T	p.S178fs
STAD	TCGA-HU-A4GT-01	ABCC1	ENST00000349029.5,ENST00000399408.2,ENST00000399410.3,ENST00000572882.1,ENST00000574224.1,ENST00000346370.5,ENST00000345148.5,ENST00000351154.5	chr16	16139692:16139870:16141998:16142160:16146580:16146673,	16141999	16142160	16142120	16142121	Frame_Shift_Ins	-	C	p.A447fs
STAD	TCGA-HU-A4GT-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847356	28847357	Frame_Shift_Ins	-	C	p.G999fs
STAD	TCGA-HU-A4GT-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847356	28847357	Frame_Shift_Ins	-	C	p.G999fs
STAD	TCGA-HU-A4GT-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847356	28847357	Frame_Shift_Ins	-	C	p.G999fs
STAD	TCGA-HU-A4GT-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645339	67645340	Frame_Shift_Ins	-	AA	p.A201fs
STAD	TCGA-HU-A4GT-01	MRO	ENST00000590988.1,ENST00000431965.2,ENST00000588444.1,ENST00000592966.1	chr18	48327718:48327874:48331523:48331706:48333073:48333156,48326416:48326513:48331523:48331706:48333073:48333156,	48331524	48331706	48331584	48331585	Frame_Shift_Ins	-	C	p.G137fs
STAD	TCGA-HU-A4GT-01	DMPK	ENST00000458663.2,ENST00000600757.1,ENST00000596686.1	chr19	46274228:46274318:46274607:46274654:46274825:46274923,46274228:46274314:46274607:46274654:46274825:46274923,	46274608	46274654	46274622	46274628	Frame_Shift_Del	CCGTGGC	-	p.A569fs
STAD	TCGA-HU-A4GT-01	MED25	ENST00000312865.6,ENST00000538643.1	chr19	50333767:50333855:50333950:50334144:50334589:50334718,	50333951	50334144	50333995	50333996	Frame_Shift_Ins	-	C	p.G317fs
STAD	TCGA-HU-A4GT-01	PTOV1	ENST00000599732.1,ENST00000601612.1,ENST00000597793.1,ENST00000598325.1,ENST00000601093.1	chr19	50363350:50363440:50363524:50363593:50363870:50363982,	50363525	50363593	50363527	50363528	Frame_Shift_Ins	-	G	p.M414fs
STAD	TCGA-HU-A4GT-01	TFF3	ENST00000398431.2	chr21	43732162:43732379:43733594:43733785:43735402:43735446,	43733595	43733785	43733677	43733678	Frame_Shift_Ins	-	G	p.P63fs
STAD	TCGA-HU-A4GT-01	TFF3	ENST00000291525.10	chr21	43732162:43732379:43733594:43733741:43735402:43735446,	43733595	43733741	43733677	43733678	Frame_Shift_Ins	-	G	p.P63fs
STAD	TCGA-HU-A4GT-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47822244:47822397:47831102:47831981:47832750:47832906,	47831103	47831981	47831673	47831674	Frame_Shift_Ins	-	T	p.L1895fs
STAD	TCGA-HU-A4GT-01	HUWE1	ENST00000427052.1,ENST00000342160.3,ENST00000262854.6	chrX	53574633:53575234:53575919:53576466:53577626:53577729,	53575920	53576466	53576031	53576032	Frame_Shift_Ins	-	C	p.G3308fs
STAD	TCGA-HU-A4GT-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76814139:76814317:76829714:76829823:76845303:76845410,	76829715	76829823	76829816	76829817	Frame_Shift_Ins	-	C	p.G2075fs
STAD	TCGA-HU-A4GU-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889837	100889837	Frame_Shift_Del	C	-	p.N123fs
STAD	TCGA-HU-A4GU-01	MYB	ENST00000526565.1,ENST00000528774.1,ENST00000341911.5	chr6	135516885:135517055:135518098:135518461:135520045:135520188,135516885:135517140:135518098:135518461:135520045:135520188,	135518099	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
STAD	TCGA-HU-A4GU-01	MYB	ENST00000533384.1	chr6	135516885:135517140:135517863:135518461:135520045:135520188,	135517864	135518461	135518338	135518338	Frame_Shift_Del	A	-	p.R481fs
STAD	TCGA-HU-A4GU-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6027157	6027158	Frame_Shift_Ins	-	T	p.K413fs
STAD	TCGA-HU-A4GU-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76112320	76112320	Frame_Shift_Del	C	-	p.A164fs
STAD	TCGA-HU-A4GU-01	CA1	ENST00000517590.1,ENST00000517618.1,ENST00000523858.1,ENST00000521846.1,ENST00000523022.1,ENST00000523953.1,ENST00000542576.1,ENST00000522814.1,ENST00000522579.1,ENST00000256119.5,ENST00000431316.1,ENST00000432364.2,ENST00000522662.1	chr8	86249230:86249292:86250480:86250678:86253827:86253888,	86250481	86250678	86250524	86250525	Frame_Shift_Ins	-	C	p.G64fs
STAD	TCGA-HU-A4GU-01	MELK	ENST00000536860.1,ENST00000545008.1,ENST00000495529.1,ENST00000298048.2,ENST00000541717.1,ENST00000489766.1	chr9	36581640:36581736:36583623:36583709:36589532:36589649,	36583624	36583709	36583695	36583695	Frame_Shift_Del	A	-	p.D43fs
STAD	TCGA-HU-A4GU-01	PAX2	ENST00000428433.1,ENST00000427256.1,ENST00000361791.3,ENST00000355243.3,ENST00000370296.2	chr10	102506020:102506060:102509502:102509671:102510450:102510648,	102509503	102509671	102509529	102509530	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-HU-A4GU-01	PAX2	ENST00000556085.1	chr10	102506020:102506060:102509505:102509671:102510450:102510648,	102509506	102509671	102509529	102509530	Frame_Shift_Ins	-	G	p.L23fs
STAD	TCGA-HU-A4GU-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873961	76873962	Frame_Shift_Ins	-	C	p.I539fs
STAD	TCGA-HU-A4GU-01	MFAP5	ENST00000537009.1,ENST00000544889.1,ENST00000535411.1,ENST00000359478.2,ENST00000538694.1,ENST00000534833.1	chr12	8803159:8803185:8804257:8804287:8807032:8807077,	8804258	8804287	8804269	8804270	Frame_Shift_Ins	-	T	p.N79fs
STAD	TCGA-HU-A4GU-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920934	57920934	Frame_Shift_Del	C	-	p.A669fs
STAD	TCGA-HU-A4GU-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182636	59182637	Frame_Shift_Del	CT	-	p.E641fs
STAD	TCGA-HU-A4GU-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339834	22339835	Frame_Shift_Ins	-	C	p.F623fs
STAD	TCGA-HU-A4GU-01	LMNB2	ENST00000325327.3,ENST00000582871.1,ENST00000532465.1	chr19	2431545:2431656:2431780:2431900:2432413:2432515,	2431781	2431900	2431862	2431862	Frame_Shift_Del	G	-	p.S524fs
STAD	TCGA-HU-A4GU-01	ARSA	ENST00000453344.2	chr22	51065261:51065480:51065593:51065834:51066373:51066598,	51065594	51065834	51065641	51065642	Frame_Shift_Ins	-	G	p.H54fs
STAD	TCGA-HU-A4GX-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
STAD	TCGA-HU-A4GX-01	STX12	ENST00000373943.4,ENST00000440806.2	chr1	28120043:28120143:28128188:28128326:28136756:28136800,	28128189	28128326	28128196	28128197	Frame_Shift_Del	AG	-	p.Q99fs
STAD	TCGA-HU-A4GX-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799060	39799061	Frame_Shift_Ins	-	G	p.R707fs
STAD	TCGA-HU-A4GX-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694023	156694024	Frame_Shift_Ins	-	G	p.L289fs
STAD	TCGA-HU-A4GX-01	NEK7	ENST00000367385.4,ENST00000538004.1,ENST00000391974.3	chr1	198201682:198201767:198222169:198222310:198231704:198231753,	198222170	198222310	198222298	198222299	Frame_Shift_Ins	-	A	p.L62fs
STAD	TCGA-HU-A4GX-01	PTPN14	ENST00000543945.1,ENST00000366956.5	chr1	214551301:214551445:214556653:214558131:214560186:214560265,	214556654	214558131	214556665	214556666	Frame_Shift_Del	TC	-	p.M845fs
STAD	TCGA-HU-A4GX-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688200	60688201	Frame_Shift_Ins	-	C	p.G616fs
STAD	TCGA-HU-A4GX-01	BCL11A	ENST00000537768.1	chr2	60679711:60679801:60687816:60688879:60689416:60689559,	60687817	60688879	60688200	60688201	Frame_Shift_Ins	-	C	p.G616fs
STAD	TCGA-HU-A4GX-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688200	60688201	Frame_Shift_Ins	-	C	p.G616fs
STAD	TCGA-HU-A4GX-01	PSD4	ENST00000245796.6	chr2	113942620:113942650:113942941:113943017:113943453:113943832,	113942942	113943017	113942944	113942945	Frame_Shift_Del	CT	-	p.A392fs
STAD	TCGA-HU-A4GX-01	SLC39A10	ENST00000359634.5	chr2	196521958:196522005:196544755:196545774:196548422:196548630,	196544756	196545774	196544942	196544943	Frame_Shift_Ins	-	A	p.E59fs
STAD	TCGA-HU-A4GX-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864163	129864164	Frame_Shift_Ins	-	T	p.K540fs
STAD	TCGA-HU-A4GX-01	SGK1	ENST00000528577.1,ENST00000477460.2,ENST00000367858.5,ENST00000367857.5,ENST00000237305.7,ENST00000413996.3,ENST00000475719.2	chr6	134491243:134491573:134491963:134492053:134492160:134492316,	134491964	134492053	134491976	134491976	Frame_Shift_Del	A	-	p.N373fs
STAD	TCGA-HU-A4GX-01	DDC	ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000380984.4,ENST00000444733.1	chr7	50571690:50571757:50595834:50595978:50596905:50597040,	50595835	50595978	50595863	50595864	Frame_Shift_Del	TC	-	p.D229fs
STAD	TCGA-HU-A4GX-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479332	100479333	Frame_Shift_Ins	-	G	p.A101fs
STAD	TCGA-HU-A4GX-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855928	Frame_Shift_Ins	-	G	p.R297fs
STAD	TCGA-HU-A4GX-01	SND1	ENST00000468166.1,ENST00000465900.1,ENST00000354725.3	chr7	127361340:127361454:127447537:127447627:127484376:127484477,	127447538	127447627	127447606	127447607	Frame_Shift_Ins	-	A	p.R407fs
STAD	TCGA-HU-A4GX-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48883070:48883436:48883900:48884028:48885416:48885624,	48883901	48884028	48883979	48883980	Frame_Shift_Ins	-	A	p.P626fs
STAD	TCGA-HU-A4GX-01	KLF10	ENST00000395884.3,ENST00000285407.6	chr8	103661013:103662619:103663376:103664289:103664391:103664625,	103663377	103664289	103663533	103663534	Frame_Shift_Del	GA	-	p.P343fs
STAD	TCGA-HU-A4GX-01	KHDRBS3	ENST00000355849.5,ENST00000524199.1,ENST00000522079.1	chr8	136569698:136569830:136594120:136594316:136619197:136619270,	136594121	136594316	136594256	136594256	Frame_Shift_Del	C	-	p.V249fs
STAD	TCGA-HU-A4GX-01	CIZ1	ENST00000491954.1,ENST00000415526.1,ENST00000325721.8	chr9	130942726:130942802:130942999:130943078:130947825:130947954,	130943000	130943078	130943047	130943048	Frame_Shift_Ins	-	G	p.P242fs
STAD	TCGA-HU-A4GX-01	CIZ1	ENST00000357558.5,ENST00000393608.1,ENST00000372938.5,ENST00000541172.1,ENST00000277465.4,ENST00000488559.2,ENST00000498156.1,ENST00000538431.1,ENST00000372948.3,ENST00000372954.1,ENST00000324544.2,ENST00000476727.2	chr9	130942726:130942802:130942999:130943093:130947825:130947954,	130943000	130943093	130943047	130943048	Frame_Shift_Ins	-	G	p.P242fs
STAD	TCGA-HU-A4GX-01	UPF2	ENST00000356352.2,ENST00000397053.2,ENST00000357604.5	chr10	11990367:11990507:11994064:11994248:11997230:11997506,	11994065	11994248	11994207	11994208	Frame_Shift_Del	TT	-	p.K964fs
STAD	TCGA-HU-A4GX-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310573	103310574	Frame_Shift_Ins	-	C	p.E591fs
STAD	TCGA-HU-A4GX-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1,ENST00000527339.1	chr11	65313912:65314035:65314268:65314391:65314909:65315036,	65314269	65314391	65314283	65314284	Frame_Shift_Ins	-	C	p.G739fs
STAD	TCGA-HU-A4GX-01	CEP164	ENST00000533223.1,ENST00000533706.1,ENST00000278935.3,ENST00000533675.1	chr11	117261492:117261624:117261714:117261931:117262941:117263019,	117261715	117261931	117261750	117261751	Frame_Shift_Del	AA	-	p.E701fs
STAD	TCGA-HU-A4GX-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924044	Frame_Shift_Ins	-	G	p.Q164fs
STAD	TCGA-HU-A4GX-01	LRP1	ENST00000243077.3,ENST00000556356.1	chr12	57603474:57603651:57603811:57603952:57604089:57604263,	57603812	57603952	57603940	57603941	Frame_Shift_Ins	-	C	p.T4189fs
STAD	TCGA-HU-A4GX-01	LRRC49	ENST00000559806.1,ENST00000560369.1,ENST00000544974.2,ENST00000436542.2,ENST00000558808.1,ENST00000558456.1,ENST00000560107.2,ENST00000561081.1,ENST00000560980.1,ENST00000260382.5,ENST00000443425.2,ENST00000560691.1	chr15	71256123:71256271:71272439:71272523:71276432:71276544,	71272440	71272523	71272473	71272474	Frame_Shift_Ins	-	A	p.A323fs
STAD	TCGA-HU-A4GX-01	WDR90	ENST00000549091.1,ENST00000548844.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1,ENST00000552943.1	chr16	708895:709011:709085:709126:709244:709376,	709086	709126	709106	709107	Frame_Shift_Ins	-	C	p.A1011fs
STAD	TCGA-HU-A4GX-01	SHMT1	ENST00000354098.3,ENST00000352886.6,ENST00000582653.1,ENST00000316694.3,ENST00000579558.1	chr17	18250827:18250970:18251638:18251754:18256985:18257131,	18251639	18251754	18251660	18251660	Frame_Shift_Del	C	-	p.V113fs
STAD	TCGA-HU-A4GX-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610701	41610701	Frame_Shift_Del	G	-	p.R134fs
STAD	TCGA-HU-A4GX-01	COX11	ENST00000576370.1	chr17	53029295:53029473:53038479:53040276:53040666:53040775,	53038480	53040276	53040139	53040140	Frame_Shift_Ins	-	A	p.F262fs
STAD	TCGA-HU-A4GX-01	MAMSTR	ENST00000356751.4,ENST00000419611.1,ENST00000318083.6	chr19	49217116:49217302:49218062:49218165:49218518:49218703,49217622:49217817:49218062:49218165:49218518:49218703,	49218063	49218165	49218106	49218107	Frame_Shift_Ins	-	G	p.P162fs
STAD	TCGA-HU-A4GX-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122567	35122568	Frame_Shift_Ins	-	C	p.V155fs
STAD	TCGA-HU-A4GX-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122567	35122568	Frame_Shift_Ins	-	C	p.V155fs
STAD	TCGA-HU-A4GX-01	FHL1	ENST00000434885.1,ENST00000394155.2,ENST00000370690.3,ENST00000539015.1,ENST00000370676.3,ENST00000370674.1,ENST00000452016.1,ENST00000543669.1,ENST00000345434.3,ENST00000535737.1,ENST00000370683.1,ENST00000458357.1,ENST00000394153.2,ENST00000420362.1,ENST00000456445.1,ENST00000449474.1	chrX	135288565:135288747:135289174:135289349:135289950:135290042,	135289175	135289349	135289289	135289290	Frame_Shift_Ins	-	A	p.N90fs
STAD	TCGA-HU-A4GX-01	AFF2	ENST00000370458.1,ENST00000370457.5,ENST00000342251.3	chrX	147582528:147582664:147733519:147733640:147743428:147744289,	147733520	147733640	147733548	147733548	Frame_Shift_Del	A	-	p.L25fs
STAD	TCGA-HU-A4H0-01	RSPRY1	ENST00000537866.1,ENST00000562768.1,ENST00000394420.4	chr16	57241969:57242022:57242986:57243099:57246883:57247010,	57242987	57243099	57243062	57243063	Frame_Shift_Ins	-	T	p.I160fs
STAD	TCGA-HU-A4H3-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087884	109087884	Frame_Shift_Del	A	-	p.E700fs
STAD	TCGA-HU-A4H3-01	PKP4	ENST00000421462.1,ENST00000426248.3	chr2	159477742:159477933:159481466:159481939:159488264:159488444,	159481467	159481939	159481628	159481629	Frame_Shift_Ins	-	C	p.S281fs
STAD	TCGA-HU-A4H3-01	PKP4	ENST00000389757.3,ENST00000389759.3,ENST00000452162.1	chr2	159477742:159477933:159481389:159481939:159488264:159488444,	159481390	159481939	159481628	159481629	Frame_Shift_Ins	-	C	p.S281fs
STAD	TCGA-HU-A4H3-01	CD86	ENST00000330540.2,ENST00000393627.2,ENST00000493101.1,ENST00000469710.1	chr3	121825044:121825347:121828111:121828255:121836894:121836940,	121828112	121828255	121828213	121828213	Frame_Shift_Del	A	-	p.W268fs
STAD	TCGA-HU-A4H3-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000249883.5,ENST00000513145.1	chr3	134085124:134085269:134086338:134086645:134089541:134090336,	134086339	134086645	134086562	134086562	Frame_Shift_Del	G	-	p.P331fs
STAD	TCGA-HU-A4H3-01	PLCH1	ENST00000340059.7,ENST00000447496.2,ENST00000414191.1,ENST00000460012.1,ENST00000469040.1,ENST00000334686.6,ENST00000494598.1	chr3	155211929:155212037:155212126:155212306:155215108:155215206,	155212127	155212306	155212245	155212246	Frame_Shift_Ins	-	T	p.K640fs
STAD	TCGA-HU-A4H3-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496636	15496637	Frame_Shift_Ins	-	G	p.L393fs
STAD	TCGA-HU-A4H3-01	RING1	ENST00000478431.1,ENST00000374656.4	chr6	33177691:33177907:33178934:33179324:33179505:33179779,	33178935	33179324	33178990	33178990	Frame_Shift_Del	G	-	p.S170fs
STAD	TCGA-HU-A4H3-01	HKDC1	ENST00000395086.2	chr10	70980058:70980254:70986962:70987125:70992519:70992668,	70986963	70987125	70987067	70987068	Frame_Shift_Ins	-	CC	p.N56fs
STAD	TCGA-HU-A4H3-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190949	17190949	Frame_Shift_Del	T	-	p.T114fs
STAD	TCGA-HU-A4H3-01	PTPN5	ENST00000477854.1,ENST00000396170.1,ENST00000358540.2,ENST00000396168.1,ENST00000396171.4,ENST00000396167.2	chr11	18750999:18751113:18751204:18751365:18754138:18754249,	18751205	18751365	18751286	18751286	Frame_Shift_Del	G	-	p.P470fs
STAD	TCGA-HU-A4H3-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
STAD	TCGA-HU-A4H3-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57921289:57921443:57921630:57921800:57921929:57922343,	57921631	57921800	57921732	57921733	Frame_Shift_Ins	-	G	p.P779fs
STAD	TCGA-HU-A4H3-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579471	7579471	Frame_Shift_Del	G	-	p.V73fs
STAD	TCGA-HU-A4H3-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.P605fs
STAD	TCGA-HU-A4H3-01	TBCD	ENST00000397466.2,ENST00000355528.4,ENST00000539345.2	chr17	80714040:80714091:80721840:80721938:80724142:80724244,	80721841	80721938	80721911	80721912	Frame_Shift_Ins	-	T	p.A102fs
STAD	TCGA-HU-A4H3-01	ROCK1	ENST00000399799.2	chr18	18625252:18625428:18629052:18629190:18629740:18629841,	18629053	18629190	18629105	18629106	Frame_Shift_Ins	-	A	p.F121fs
STAD	TCGA-HU-A4H3-01	TMX3	ENST00000562706.1,ENST00000299608.2,ENST00000564008.1	chr18	66365168:66365268:66367641:66367722:66377257:66377381,66365168:66365268:66367641:66367722:66368981:66369027,	66367642	66367722	66367694	66367695	Frame_Shift_Del	TA	-	p.R114fs
STAD	TCGA-HU-A4H3-01	BAX	ENST00000415969.2,ENST00000356483.4,ENST00000293288.8,ENST00000539787.1,ENST00000345358.7	chr19	49458185:49458219:49458943:49459090:49459454:49459573,49458814:49458856:49458943:49459090:49459454:49459573,	49458944	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-HU-A4H3-01	BAX	ENST00000513545.1	chr19	49458185:49458219:49458804:49459090:49459454:49459573,	49458805	49459090	49458971	49458972	Frame_Shift_Ins	-	G	p.M38fs
STAD	TCGA-HU-A4H4-01	MAP2	ENST00000447185.1	chr2	210545473:210545551:210557360:210561074:210561265:210561456,	210557361	210561074	210557836	210557837	Frame_Shift_Ins	-	A	p.P314fs
STAD	TCGA-HU-A4H4-01	MAP2	ENST00000360351.4	chr2	210545473:210545551:210557348:210561074:210561265:210561456,	210557349	210561074	210557836	210557837	Frame_Shift_Ins	-	A	p.P314fs
STAD	TCGA-HU-A4H4-01	PBRM1	ENST00000296302.7,ENST00000446103.1,ENST00000356770.4,ENST00000423351.1,ENST00000409767.1,ENST00000409057.1,ENST00000412587.1,ENST00000409114.3,ENST00000410007.1,ENST00000394830.3,ENST00000337303.4	chr3	52678719:52678805:52682359:52682458:52685757:52685826,	52682360	52682458	52682400	52682401	Frame_Shift_Ins	-	T	p.N258fs
STAD	TCGA-HU-A4H4-01	PACRGL	ENST00000503747.1,ENST00000508952.1	chr4	20706282:20706437:20714410:20714545:20715054:20715084,20711305:20711396:20714410:20714545:20715054:20715084,20709425:20709493:20714410:20714545:20715054:20715084,	20714411	20714545	20714416	20714417	Frame_Shift_Del	GA	-	p.L172fs
STAD	TCGA-HU-A4H4-01	PSAP	ENST00000394934.1,ENST00000394936.3	chr10	73578787:73578868:73579221:73579379:73579470:73579657,	73579222	73579379	73579295	73579295	Frame_Shift_Del	T	-	p.N426fs
STAD	TCGA-HU-A4H4-01	PLEKHA5	ENST00000536974.1,ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000429027.2,ENST00000538305.1,ENST00000309364.4,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19407978:19408099:19410366:19410471:19413882:19413955,	19410367	19410471	19410381	19410381	Frame_Shift_Del	A	-	p.S149fs
STAD	TCGA-HU-A4H4-01	HEATR5A	ENST00000439727.1,ENST00000543095.2,ENST00000389961.3	chr14	31765114:31765269:31774110:31774383:31775937:31776085,31771500:31771725:31774110:31774383:31775937:31776016,	31774111	31774383	31774332	31774332	Frame_Shift_Del	T	-	p.K1673fs
STAD	TCGA-HU-A4H4-01	ARHGEF15	ENST00000361926.3,ENST00000421050.1	chr17	8215308:8215958:8216239:8216572:8216818:8216873,	8216240	8216572	8216523	8216523	Frame_Shift_Del	C	-	p.D295fs
STAD	TCGA-HU-A4H4-01	LUC7L3	ENST00000513969.1,ENST00000393227.2,ENST00000503728.1	chr17	48823979:48824063:48827861:48828002:48828107:48828213,	48827862	48828002	48827882	48827883	Frame_Shift_Ins	-	A	p.D386fs
STAD	TCGA-HU-A4H6-01	LAIR1	ENST00000418556.1,ENST00000475389.1,ENST00000348231.4,ENST00000474878.1,ENST00000313038.6,ENST00000391743.3,ENST00000391742.2,ENST00000434277.2,ENST00000440716.1,ENST00000463489.1,ENST00000391741.2	chr19	54867845:54867876:54867964:54868007:54868099:54868228,	54867965	54868007	54868000	54868001	Frame_Shift_Ins	-	G	p.P197fs
STAD	TCGA-HU-A4H8-01	TMEM79	ENST00000463670.1	chr1	156254974:156255058:156255315:156255774:156256050:156256264,	156255316	156255774	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4H8-01	TMEM79	ENST00000495881.1	chr1	156254112:156254197:156254974:156256264:156261175:156261316,	156254975	156256264	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4H8-01	TMEM79	ENST00000295694.5	chr1	156254112:156254197:156254974:156255774:156256050:156256264,156252743:156252856:156254974:156255774:156256050:156256264,	156254975	156255774	156255498	156255499	Frame_Shift_Ins	-	C	p.M160fs
STAD	TCGA-HU-A4H8-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323947	235323948	Frame_Shift_Ins	-	T	p.T82fs
STAD	TCGA-HU-A4H8-01	GREB1	ENST00000381483.2,ENST00000263834.5,ENST00000381486.2,ENST00000234142.5,ENST00000389825.3	chr2	11702588:11702708:11706605:11706782:11716478:11716661,	11706606	11706782	11706699	11706699	Frame_Shift_Del	C	-	p.S124fs
STAD	TCGA-HU-A4H8-01	LRP1B	ENST00000389484.3,ENST00000437977.1,ENST00000442974.1	chr2	141027810:141027915:141031992:141032167:141055376:141055538,	141031993	141032167	141032034	141032035	Frame_Shift_Ins	-	C	p.G4367fs
STAD	TCGA-HU-A4H8-01	CNTN6	ENST00000446702.2,ENST00000539053.1,ENST00000350110.2,ENST00000397479.2	chr3	1394007:1394135:1413982:1414158:1414521:1414639,	1413983	1414158	1414122	1414122	Frame_Shift_Del	A	-	p.L544fs
STAD	TCGA-HU-A4H8-01	PIGG	ENST00000506898.1,ENST00000383028.4,ENST00000453061.2,ENST00000504346.1,ENST00000509768.1	chr4	509761:509974:514844:515062:515448:515730,	514845	515062	515055	515056	Frame_Shift_Ins	-	T	p.V442fs
STAD	TCGA-HU-A4H8-01	STX18	ENST00000306200.2,ENST00000505286.1,ENST00000507908.1,ENST00000512195.1	chr4	4425244:4425314:4436496:4436585:4440120:4440236,4426899:4426949:4436496:4436585:4440120:4440236,	4436497	4436585	4436580	4436581	Frame_Shift_Ins	-	T	p.I207fs
STAD	TCGA-HU-A4H8-01	DHX15	ENST00000336812.4	chr4	24544562:24544649:24550477:24550645:24556347:24556566,	24550478	24550645	24550502	24550503	Frame_Shift_Ins	-	T	p.K408fs
STAD	TCGA-HU-A4H8-01	CLCN3	ENST00000515420.1	chr4	170616781:170616843:170618339:170618430:170618511:170618885,	170618340	170618430	170618379	170618380	Frame_Shift_Ins	-	T	p.S352fs
STAD	TCGA-HU-A4H8-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610311	127610312	Frame_Shift_Ins	-	C	p.G2553fs
STAD	TCGA-HU-A4H8-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627690	137627690	Frame_Shift_Del	T	-	p.K322fs
STAD	TCGA-HU-A4H8-01	HFE	ENST00000317896.7	chr6	26091137:26091332:26092912:26093188:26093346:26093460,	26092913	26093188	26092989	26092990	Frame_Shift_Ins	-	C	p.Y231fs
STAD	TCGA-HU-A4H8-01	BRD2	ENST00000395289.2,ENST00000482914.1,ENST00000449085.2,ENST00000374831.4,ENST00000607833.1,ENST00000443797.2,ENST00000449025.1,ENST00000374825.4,ENST00000395287.1	chr6	32944189:32944241:32944338:32944713:32945218:32945347,	32944339	32944713	32944465	32944468	Frame_Shift_Del	AGAG	-	p.R317fs
STAD	TCGA-HU-A4H8-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086414	144086414	Frame_Shift_Del	A	-	p.S237fs
STAD	TCGA-HU-A4H8-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098496	144098497	Frame_Shift_Ins	-	G	p.R163fs
STAD	TCGA-HU-A4H8-01	RB1CC1	ENST00000435644.2,ENST00000539297.1,ENST00000025008.5	chr8	53571432:53571536:53573155:53573217:53573485:53573567,	53573156	53573217	53573205	53573206	Frame_Shift_Ins	-	A	p.L547fs
STAD	TCGA-HU-A4H8-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696452	13696452	Frame_Shift_Del	G	-	p.P1005fs
STAD	TCGA-HU-A4H8-01	PSMC3	ENST00000298852.3,ENST00000530912.1,ENST00000602866.1	chr11	47440352:47440496:47440666:47440748:47441814:47441960,	47440667	47440748	47440673	47440674	Frame_Shift_Del	CA	-	p.V401fs
STAD	TCGA-HU-A4H8-01	NPAT	ENST00000278612.8	chr11	108040654:108040770:108042925:108044578:108046972:108047101,	108042926	108044578	108044069	108044070	Frame_Shift_Ins	-	T	p.S548fs
STAD	TCGA-HU-A4H8-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
STAD	TCGA-HU-A4H8-01	PLEKHA5	ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000538972.1,ENST00000539256.1,ENST00000429027.2,ENST00000424268.1,ENST00000299275.6,ENST00000543806.1	chr12	19518897:19519043:19522626:19522732:19528464:19528519,	19522627	19522732	19522710	19522711	Frame_Shift_Del	AT	-	p.F1113fs
STAD	TCGA-HU-A4H8-01	CHRNA7	ENST00000454250.3,ENST00000306901.3	chr15	32393505:32393550:32403990:32404100:32446107:32446187,	32403991	32404100	32404036	32404037	Frame_Shift_Ins	-	G	p.P124fs
STAD	TCGA-HU-A4H8-01	NOX5	ENST00000388866.3,ENST00000530406.2,ENST00000455873.3,ENST00000260364.5,ENST00000527315.1,ENST00000448182.3	chr15	69329367:69329550:69331196:69331329:69335002:69335145,	69331197	69331329	69331226	69331226	Frame_Shift_Del	T	-	p.P467fs
STAD	TCGA-HU-A4H8-01	GLYR1	ENST00000381983.3,ENST00000588732.1,ENST00000436648.5,ENST00000589389.1,ENST00000321919.9,ENST00000591451.1	chr16	4861623:4861803:4862086:4862249:4863737:4863839,	4862087	4862249	4862229	4862230	Frame_Shift_Ins	-	C	p.G380fs
STAD	TCGA-HU-A4H8-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562741	14562741	Frame_Shift_Del	C	-	p.R357fs
STAD	TCGA-HU-A4HD-01	AFF3	ENST00000356421.2,ENST00000409579.1,ENST00000317233.4,ENST00000409236.2	chr2	100209656:100210751:100217896:100218083:100266087:100266128,	100217897	100218083	100217914	100217915	Frame_Shift_Ins	-	G	p.H477fs
STAD	TCGA-HU-A4HD-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579471	7579472	Frame_Shift_Ins	-	G	p.P72fs
STAD	TCGA-IN-7808-01	CMPK1	ENST00000371871.4,ENST00000371870.3	chr1	47799612:47799788:47834140:47834287:47838626:47838743,	47834141	47834287	47834143	47834144	Frame_Shift_Ins	-	AT	p.K58fs
STAD	TCGA-IP-7968-01	FOSL2	ENST00000264716.4	chr2	28615724:28616689:28626973:28627225:28631625:28631669,	28626974	28627225	28627223	28627224	Frame_Shift_Ins	-	C	p.E117fs
STAD	TCGA-IP-7968-01	TMEM161B	ENST00000511087.1	chr5	87498778:87498892:87501617:87501771:87502255:87502316,	87501618	87501771	87501703	87501704	Frame_Shift_Ins	-	A	p.L243fs
STAD	TCGA-IP-7968-01	TMEM161B	ENST00000514135.1,ENST00000509387.1,ENST00000512429.1,ENST00000296595.6,ENST00000506536.1,ENST00000511218.1,ENST00000507872.1	chr5	87498778:87498892:87501630:87501771:87502255:87502316,	87501631	87501771	87501703	87501704	Frame_Shift_Ins	-	A	p.L243fs
STAD	TCGA-IP-7968-01	TMEM161B	ENST00000510089.1	chr5	87498778:87498892:87501570:87501771:87502255:87502316,	87501571	87501771	87501703	87501704	Frame_Shift_Ins	-	A	p.L243fs
TGCT	TCGA-XE-AAOC-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153599	19153600	Frame_Shift_Del	CA	-	p.402_403del
TGCT	TCGA-VF-A8A9-01	SUPT5H	ENST00000595368.1,ENST00000594729.1,ENST00000402194.2,ENST00000432763.2,ENST00000601978.1,ENST00000601515.1,ENST00000359191.6,ENST00000599117.1,ENST00000598725.1	chr19	39936521:39936605:39943995:39944161:39948314:39948380,	39943996	39944161	39944127	39944128	Frame_Shift_Ins	-	C	p.K69fs
TGCT	TCGA-VF-A8A9-01	NNT	ENST00000512422.1,ENST00000344920.4,ENST00000505678.2,ENST00000264663.5	chr5	43609244:43609448:43613009:43613239:43615949:43616136,	43613010	43613239	43613185	43613186	Frame_Shift_Ins	-	GG	p.A109fs
TGCT	TCGA-VF-A8A9-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384353	12384353	Frame_Shift_Del	G	-	p.Y288fs
TGCT	TCGA-2G-AAF4-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000467388.1,ENST00000426233.1,ENST00000540518.1,ENST00000446622.1,ENST00000236959.9	chr2	216203592:216203630:216209501:216209594:216211481:216211664,	216209502	216209594	216209567	216209568	Frame_Shift_Del	CT	-	p.431_431del
TGCT	TCGA-2G-AAL5-01	GNL3	ENST00000496254.1,ENST00000492349.1,ENST00000479230.1,ENST00000394799.2,ENST00000418458.1,ENST00000474423.1,ENST00000468146.1,ENST00000462550.1	chr3	52720784:52720843:52721261:52721399:52721517:52721631,	52721262	52721399	52721395	52721396	Frame_Shift_Del	AG	-	p.69_69del
TGCT	TCGA-2G-AAFZ-01	ARHGAP39	ENST00000276826.5,ENST00000540274.1	chr8	145780943:145781027:145806229:145806661:145830919:145831080,	145806230	145806661	145806589	145806590	Frame_Shift_Ins	-	CACTCACC	p.C51fs
TGCT	TCGA-YU-A94I-01	CREBBP	ENST00000382070.3	chr16	3860603:3860780:3900297:3901010:3929832:3930121,	3900298	3901010	3900553	3900554	Frame_Shift_Del	AA	-	p.181_182del
TGCT	TCGA-2G-AAFI-01	BBS9	ENST00000354265.4,ENST00000242067.6,ENST00000434373.1,ENST00000350941.3,ENST00000433714.1,ENST00000396127.2,ENST00000355070.2	chr7	33397466:33397607:33407378:33407474:33423277:33423450,	33407379	33407474	33407379	33407380	Frame_Shift_Ins	-	T	p.G565fs
TGCT	TCGA-S6-A8JW-01	MRPL3	ENST00000510923.1,ENST00000512877.1	chr3	131219273:131219365:131220374:131220559:131221573:131221795,	131220375	131220559	131220418	131220419	Frame_Shift_Del	AC	-	p.78_79del
TGCT	TCGA-2G-AAG5-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30735366	30735367	Frame_Shift_Ins	-	T	p.V1541fs
TGCT	TCGA-WZ-A7V3-01	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101226046:101226146:101232506:101232659:101237400:101237567,	101232507	101232659	101232531	101232532	Frame_Shift_Del	TA	-	p.520_520del
TGCT	TCGA-2G-AAM3-01	GRID2	ENST00000282020.4,ENST00000505687.1	chr4	93511281:93511437:94006145:94006430:94031898:94032104,	94006146	94006430	94006231	94006232	Frame_Shift_Del	CG	-	p.110_110del
TGCT	TCGA-2G-AAGM-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967246	64967247	Frame_Shift_Ins	-	A	p.D731fs
TGCT	TCGA-2G-AAGM-01	CAMKK1	ENST00000381771.2,ENST00000381769.2,ENST00000348335.2,ENST00000158166.5	chr17	3776702:3776756:3779516:3779716:3783639:3783728,	3779517	3779716	3779556	3779556	Frame_Shift_Del	G	-	p.E358fs
TGCT	TCGA-2G-AAF8-01	RBM10	ENST00000377604.3	chrX	47028713:47028897:47030426:47030657:47032526:47032596,	47030427	47030657	47030570	47030672	Frame_Shift_Del	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	-	p.180_209del
TGCT	TCGA-2G-AAGW-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1272718	1272719	Frame_Shift_Ins	-	C	p.T4870fs
TGCT	TCGA-VF-A8AE-01	ANKRD35	ENST00000355594.4	chr1	145560888:145560926:145561095:145563099:145566685:145566775,	145561096	145563099	145561847	145561847	Frame_Shift_Del	C	-	p.A512fs
TGCT	TCGA-2G-AALR-01	NFIA	ENST00000371189.4	chr1	61547533:61547719:61548432:61548490:61553820:61554352,	61548433	61548490	61548476	61548477	Frame_Shift_Del	CT	-	p.49_50del
TGCT	TCGA-2G-AAHT-01	ELAVL4	ENST00000448907.2,ENST00000371821.1,ENST00000371823.4,ENST00000371819.1,ENST00000357083.4,ENST00000371827.1,ENST00000371824.1	chr1	50610628:50610869:50642760:50642864:50659436:50659590,	50642761	50642864	50642764	50642765	Frame_Shift_Del	AG	-	p.102_102del
TGCT	TCGA-VF-A8A8-01	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871042	871045	Frame_Shift_Del	CTGG	-	p.482_483del
TGCT	TCGA-XE-A9SE-01	ZNF277	ENST00000450657.1	chr7	111846755:111846862:111926927:111927129:111935923:111936012,	111926928	111927129	111926968	111926969	Frame_Shift_Ins	-	AGTCC	p.E44fs
TGCT	TCGA-XE-A9SE-01	ZNF277	ENST00000361946.4	chr7	111846755:111846862:111926931:111927129:111935923:111936012,	111926932	111927129	111926968	111926969	Frame_Shift_Ins	-	AGTCC	p.E44fs
TGCT	TCGA-2G-AALT-01	GPATCH2L	ENST00000312858.5	chr14	76642965:76643033:76644234:76644274:76647106:76647192,	76644235	76644274	76644260	76644261	Frame_Shift_Del	AG	-	p.359_360del
TGCT	TCGA-2G-AALT-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892059	72892060	Frame_Shift_Del	TC	-	p.578_578del
TGCT	TCGA-XE-AAO6-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676901	53676902	Frame_Shift_Del	GA	-	p.518_519del
TGCT	TCGA-SN-A84W-01	G6PC	ENST00000253801.2	chr17	41055947:41056057:41059539:41059645:41061319:41061435,	41059540	41059645	41059575	41059576	Frame_Shift_Ins	-	TA	p.V126fs
TGCT	TCGA-YU-A912-01	LRRC37B	ENST00000583758.1,ENST00000327564.7,ENST00000341671.7,ENST00000582815.1,ENST00000543378.2,ENST00000394713.3,ENST00000584368.1	chr17	30361928:30362000:30362583:30362658:30372718:30372837,	30362584	30362658	30362658	30362659	Frame_Shift_Del	TG	-	p.708_708del
TGCT	TCGA-2G-AAKH-01	SETD3	ENST00000331768.5,ENST00000453764.1	chr14	99876140:99876552:99879287:99879402:99880212:99880271,99872852:99872927:99879287:99879402:99880212:99880271,	99879288	99879402	99879294	99879294	Frame_Shift_Del	G	-	p.G282fs
TGCT	TCGA-2G-AAFH-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37211070	37211071	Frame_Shift_Del	TG	-	p.450_451del
TGCT	TCGA-S6-A8JY-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121882	12121883	Frame_Shift_Del	TA	-	p.618_618del
TGCT	TCGA-2G-AAF6-01	RAD21	ENST00000518055.1,ENST00000523986.1,ENST00000297338.2	chr8	117859572:117859930:117861184:117861268:117862856:117863000,	117861185	117861268	117861253	117861254	Frame_Shift_Del	CT	-	p.546_546del
TGCT	TCGA-2G-AALF-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209797184:209797345:209798992:209799371:209800211:209800316,	209798993	209799371	209799360	209799361	Frame_Shift_Del	CA	-	p.537_537del
TGCT	TCGA-ZM-AA06-01	UBQLN1	ENST00000376395.4,ENST00000533705.1,ENST00000257468.7	chr9	86293355:86293514:86294689:86294952:86297865:86297981,	86294690	86294952	86294939	86294939	Frame_Shift_Del	T	-	p.L155fs
TGCT	TCGA-ZM-AA06-01	UBQLN1	ENST00000376395.4,ENST00000533705.1,ENST00000257468.7	chr9	86293355:86293514:86294689:86294952:86297865:86297981,	86294690	86294952	86294943	86294943	Frame_Shift_Del	C	-	p.G153fs
TGCT	TCGA-XE-AAOB-01	CERS5	ENST00000317551.6,ENST00000546676.1,ENST00000380189.4,ENST00000438450.2,ENST00000547787.1,ENST00000542320.1,ENST00000547138.1,ENST00000551005.1,ENST00000551697.1,ENST00000422340.2	chr12	50529514:50529621:50529723:50529852:50531510:50531576,	50529724	50529852	50529846	50529846	Frame_Shift_Del	G	-	p.L215fs
TGCT	TCGA-2X-A9D5-01	BPTF	ENST00000335221.5,ENST00000306378.6,ENST00000424123.3,ENST00000321892.4,ENST00000544778.2	chr17	65900817:65900956:65905697:65905877:65906992:65909303,	65905698	65905877	65905759	65905759	Frame_Shift_Del	A	-	p.P1084fs
TGCT	TCGA-VF-A8A8-01	LARP4B	ENST00000316157.3	chr10	866739:866785:871004:871256:871703:871810,	871005	871256	871022	871031	Frame_Shift_Del	AGGAGAGGAT	-	p.ESSP486fs
TGCT	TCGA-VF-A8A8-01	RECQL	ENST00000421138.2,ENST00000542432.1,ENST00000396093.3,ENST00000314748.6,ENST00000536964.1,ENST00000539672.1,ENST00000444129.2,ENST00000536240.1	chr12	21643308:21643312:21644452:21644650:21652488:21652549,	21644453	21644650	21644546	21644547	Frame_Shift_Ins	-	T	p.NP40fs
TGCT	TCGA-2G-AALS-01	RMDN3	ENST00000560588.1,ENST00000260385.6,ENST00000558232.1,ENST00000338376.3,ENST00000558777.1	chr15	41029485:41029539:41029825:41029924:41030162:41030240,	41029826	41029924	41029893	41029894	Frame_Shift_Ins	-	T	p.C386fs
TGCT	TCGA-2G-AAFH-01	RPL5	ENST00000370321.3,ENST00000315741.5,ENST00000461952.1	chr1	93299101:93299217:93300335:93300470:93301746:93301828,	93300336	93300470	93300360	93300361	Frame_Shift_Ins	-	AT	p.Y72fs
TGCT	TCGA-2G-AAFH-01	ZNF567	ENST00000588311.1,ENST00000392163.2	chr19	37203682:37203769:37209849:37211463:37214090:37214154,	37209850	37211463	37211070	37211071	Frame_Shift_Del	TG	-	p.C451fs
TGCT	TCGA-2G-AALT-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892059	72892060	Frame_Shift_Del	TC	-	p.QK577fs
TGCT	TCGA-2G-AALT-01	GPATCH2L	ENST00000312858.5	chr14	76642965:76643033:76644234:76644274:76647106:76647192,	76644235	76644274	76644260	76644261	Frame_Shift_Del	AG	-	p.R360fs
TGCT	TCGA-2G-AAFV-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1018561	1018562	Frame_Shift_Ins	-	C	p.S1414fs
TGCT	TCGA-2G-AAFE-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510227	195510228	Frame_Shift_Ins	-	G	p.F2742fs
TGCT	TCGA-S6-A8JY-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800272	28800273	Frame_Shift_Ins	-	C	p.P344fs
TGCT	TCGA-S6-A8JY-01	HIVEP1	ENST00000379388.2	chr6	12089416:12089470:12120122:12126103:12129991:12130125,	12120123	12126103	12121882	12121883	Frame_Shift_Del	TA	-	p.TN618fs
TGCT	TCGA-XE-AAOF-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515266	183515267	Frame_Shift_Ins	-	A	p.K829fs
TGCT	TCGA-W4-A7U2-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225231445:225231491:225231587:225231685:225237911:225238078,	225231588	225231685	225231637	225231637	Frame_Shift_Del	T	-	p.F622fs
TGCT	TCGA-2G-AAF4-01	ATIC	ENST00000479093.1,ENST00000443953.1,ENST00000435675.1,ENST00000467388.1,ENST00000426233.1,ENST00000540518.1,ENST00000446622.1,ENST00000236959.9	chr2	216203592:216203630:216209501:216209594:216211481:216211664,	216209502	216209594	216209567	216209568	Frame_Shift_Del	CT	-	p.NS430fs
TGCT	TCGA-2G-AAF4-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1	chr11	65310897:65311020:65313912:65314035:65314268:65314391,	65313913	65314035	65313978	65313978	Frame_Shift_Del	G	-	p.P763fs
TGCT	TCGA-2G-AAEX-01	MEGF11	ENST00000490495.1,ENST00000360698.4	chr15	66208485:66208614:66208935:66209294:66210303:66210432,	66208936	66209294	66209208	66209209	Frame_Shift_Ins	-	G	p.P725fs
TGCT	TCGA-2G-AAEX-01	MEGF11	ENST00000288745.3,ENST00000395614.1,ENST00000409699.2,ENST00000395625.2,ENST00000422354.1	chr15	66208485:66208614:66209165:66209294:66210303:66210432,	66209166	66209294	66209208	66209209	Frame_Shift_Ins	-	G	p.P725fs
TGCT	TCGA-2G-AAGT-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100977562:100977658:100990144:100990303:100994164:100994344,	100990145	100990303	100990176	100990177	Frame_Shift_Ins	-	G	p.G1163fs
TGCT	TCGA-XY-A8S2-01	SIPA1L3	ENST00000222345.6	chr19	38682784:38682950:38684176:38684420:38689028:38689172,	38684177	38684420	38684282	38684282	Frame_Shift_Del	C	-	p.P1568fs
TGCT	TCGA-2G-AAL5-01	GNL3	ENST00000496254.1,ENST00000492349.1,ENST00000479230.1,ENST00000394799.2,ENST00000418458.1,ENST00000474423.1,ENST00000468146.1,ENST00000462550.1	chr3	52720784:52720843:52721261:52721399:52721517:52721631,	52721262	52721399	52721395	52721396	Frame_Shift_Del	AG	-	p.Q57fs
TGCT	TCGA-2G-AAL5-01	KIF21A	ENST00000551264.1	chr12	39705218:39705355:39713707:39713815:39716469:39716684,	39713708	39713815	39713783	39713784	Frame_Shift_Ins	-	T	p.S1235fs
TGCT	TCGA-2G-AAKG-05	ELF1	ENST00000442101.1,ENST00000498824.1,ENST00000239882.3	chr13	41506169:41508164:41515056:41515506:41517087:41517280,	41515057	41515506	41515334	41515335	Frame_Shift_Ins	-	G	p.P327fs
TGCT	TCGA-W4-A7U3-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225231445:225231491:225231587:225231685:225237911:225238078,	225231588	225231685	225231637	225231637	Frame_Shift_Del	T	-	p.F622fs
TGCT	TCGA-ZM-AA05-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515266	183515267	Frame_Shift_Ins	-	A	p.K829fs
TGCT	TCGA-XE-A9SE-01	ZNF277	ENST00000450657.1	chr7	111846755:111846862:111926927:111927129:111935923:111936012,	111926928	111927129	111926968	111926969	Frame_Shift_Ins	-	AGTCC	p.S45fs
TGCT	TCGA-XE-A9SE-01	ZNF277	ENST00000361946.4	chr7	111846755:111846862:111926931:111927129:111935923:111936012,	111926932	111927129	111926968	111926969	Frame_Shift_Ins	-	AGTCC	p.S45fs
TGCT	TCGA-XE-A9SE-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
TGCT	TCGA-2G-AAGJ-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13357185	13357185	Frame_Shift_Del	C	-	p.G132fs
TGCT	TCGA-VF-A8A9-01	NEB	ENST00000603639.1,ENST00000604864.1,ENST00000397345.3,ENST00000427231.2,ENST00000413693.1,ENST00000409198.1,ENST00000172853.10	chr2	152363422:152363527:152364518:152364623:152369246:152369351,	152364519	152364623	152364618	152364619	Frame_Shift_Ins	-	T	p.I7784fs
TGCT	TCGA-VF-A8A9-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4735970	4735970	Frame_Shift_Del	A	-	p.S700fs
TGCT	TCGA-VF-A8A9-01	ZNF44	ENST00000397742.3,ENST00000393337.3	chr19	12361056:12361183:12383301:12384878:12385787:12385848,	12383302	12384878	12384353	12384353	Frame_Shift_Del	G	-	p.S287fs
TGCT	TCGA-XE-AAO3-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581488	17581489	Frame_Shift_Ins	-	T	p.F37fs
TGCT	TCGA-XE-AAO6-01	CPT2	ENST00000371486.3	chr1	53667994:53668101:53675686:53676991:53678935:53679869,	53675687	53676991	53676901	53676902	Frame_Shift_Del	GA	-	p.E519fs
TGCT	TCGA-ZM-AA06-01	UBQLN1	ENST00000376395.4,ENST00000533705.1,ENST00000257468.7	chr9	86293355:86293514:86294689:86294952:86297865:86297981,	86294690	86294952	86294939	86294939	Frame_Shift_Del	T	-	p.G154fs
TGCT	TCGA-S6-A8JW-01	MRPL3	ENST00000510923.1,ENST00000512877.1	chr3	131219273:131219365:131220374:131220559:131221573:131221795,	131220375	131220559	131220418	131220419	Frame_Shift_Del	AC	-	p.C78fs
TGCT	TCGA-2G-AAM3-01	GRID2	ENST00000282020.4,ENST00000505687.1	chr4	93511281:93511437:94006145:94006430:94031898:94032104,	94006146	94006430	94006231	94006232	Frame_Shift_Del	CG	-	p.DA110fs
TGCT	TCGA-2G-AAFI-01	PRSS3	ENST00000457896.1,ENST00000342836.4	chr9	33750687:33750725:33794743:33794871:33796640:33796800,	33794744	33794871	33794798	33794799	Frame_Shift_Del	GA	-	p.MR3fs
TGCT	TCGA-XE-AAOC-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153599	19153600	Frame_Shift_Del	CA	-	p.V402fs
TGCT	TCGA-SN-A6IS-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173389	154173390	Frame_Shift_Ins	-	C	p.P223fs
TGCT	TCGA-SN-A6IS-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173389	154173390	Frame_Shift_Ins	-	C	p.P223fs
TGCT	TCGA-2G-AAGI-05	SLC4A7	ENST00000454389.1,ENST00000295736.5,ENST00000388777.4	chr3	27465527:27465643:27472788:27473160:27475445:27475595,27465527:27465643:27472788:27473160:27475406:27475595,	27472789	27473160	27473139	27473140	Frame_Shift_Ins	-	G	p.P258fs
TGCT	TCGA-2G-AAGI-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37367467	37367468	Frame_Shift_Ins	-	A	p.K1364fs
TGCT	TCGA-SB-A6J6-01	RBM48	ENST00000265732.5	chr7	92161717:92161863:92163715:92164284:92166164:92166848,	92163716	92164284	92164020	92164021	Frame_Shift_Del	TT	-	p.SL251fs
TGCT	TCGA-SB-A6J6-01	KIR2DL4	ENST00000463062.1	chr19	55320287:55320338:55324579:55324683:55325144:55325197,55317405:55317699:55324579:55324683:55325144:55325197,	55324580	55324683	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
TGCT	TCGA-SB-A6J6-01	KIR2DL4	ENST00000396284.2,ENST00000396289.5	chr19	55320287:55320338:55324579:55324750:55325144:55325197,	55324580	55324750	55324675	55324675	Frame_Shift_Del	A	-	p.K268fs
TGCT	TCGA-WZ-A8D5-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.A29fs
TGCT	TCGA-2G-AAGF-01	MYT1	ENST00000328439.1,ENST00000360149.4	chr20	62844886:62845000:62848419:62848634:62850263:62850388,	62848420	62848634	62848481	62848482	Frame_Shift_Ins	-	C	p.P565fs
TGCT	TCGA-2G-AAHT-01	ELAVL4	ENST00000448907.2,ENST00000371821.1,ENST00000371823.4,ENST00000371819.1,ENST00000357083.4,ENST00000371827.1,ENST00000371824.1	chr1	50610628:50610869:50642760:50642864:50659436:50659590,	50642761	50642864	50642764	50642765	Frame_Shift_Del	AG	-	p.Q85fs
TGCT	TCGA-2G-AAKD-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.A29fs
TGCT	TCGA-2G-AAGX-01	RHBG	ENST00000400992.2,ENST00000544720.1,ENST00000368245.3,ENST00000451864.2	chr1	156347153:156347278:156347780:156348190:156351137:156351304,	156347781	156348190	156348012	156348013	Frame_Shift_Ins	-	G	p.GG133fs
TGCT	TCGA-2G-AAHC-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
TGCT	TCGA-2G-AAGK-01	WDR90	ENST00000552943.1	chr16	703524:703670:703745:705147:705306:705468,	703746	705147	705131	705131	Frame_Shift_Del	T	-	p.F515fs
TGCT	TCGA-2G-AAGK-01	WDR90	ENST00000549091.1,ENST00000420061.2,ENST00000293879.4,ENST00000549648.1	chr16	703785:703803:705028:705147:705306:705468,	705029	705147	705131	705131	Frame_Shift_Del	T	-	p.F515fs
TGCT	TCGA-2G-AAG7-01	CSPG5	ENST00000264723.4,ENST00000383738.2	chr3	47614175:47614364:47618322:47619418:47620086:47622282,	47618323	47619418	47619395	47619395	Frame_Shift_Del	C	-	p.E41fs
TGCT	TCGA-VF-A8AA-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21779188:21779291:21781544:21781784:21784055:21784217,	21781545	21781784	21781683	21781684	Frame_Shift_Ins	-	C	p.N2692fs
TGCT	TCGA-2G-AALZ-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27878527	27878528	Frame_Shift_Ins	-	GG	p.PP33fs
TGCT	TCGA-2G-AALZ-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
TGCT	TCGA-2G-AAGM-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27878527	27878528	Frame_Shift_Ins	-	G	p.PP33fs
TGCT	TCGA-2G-AAGM-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967246	64967247	Frame_Shift_Ins	-	A	p.EK731fs
TGCT	TCGA-2G-AAGM-01	CAMKK1	ENST00000381771.2,ENST00000381769.2,ENST00000348335.2,ENST00000158166.5	chr17	3776702:3776756:3779516:3779716:3783639:3783728,	3779517	3779716	3779556	3779556	Frame_Shift_Del	G	-	p.P357fs
TGCT	TCGA-VF-A8AD-01	PPP1R10	ENST00000376511.2	chr6	30572364:30572512:30572770:30572871:30573699:30573775,	30572771	30572871	30572794	30572795	Frame_Shift_Ins	-	T	p.NT310fs
TGCT	TCGA-2G-AALF-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209797184:209797345:209798992:209799371:209800211:209800316,	209798993	209799371	209799360	209799361	Frame_Shift_Del	CA	-	p.CD536fs
TGCT	TCGA-XE-AANI-01	RARS2	ENST00000369536.5	chr6	88240501:88240660:88251635:88251712:88255333:88255417,	88251636	88251712	88251684	88251684	Frame_Shift_Del	A	-	p.F188fs
TGCT	TCGA-2G-AALP-01	STRA6	ENST00000569936.1	chr15	74474788:74474801:74475593:74476330:74477320:74477396,	74475594	74476330	74476251	74476252	Frame_Shift_Ins	-	T	p.HH415fs
TGCT	TCGA-2G-AALP-01	STRA6	ENST00000574278.1,ENST00000395105.4,ENST00000423167.2,ENST00000323940.5,ENST00000574439.1,ENST00000545137.1,ENST00000535552.1,ENST00000563965.1,ENST00000449139.2,ENST00000416286.3	chr15	74474788:74474801:74476196:74476330:74477320:74477396,	74476197	74476330	74476251	74476252	Frame_Shift_Ins	-	T	p.HH415fs
TGCT	TCGA-2G-AAKH-01	NNT	ENST00000512422.1,ENST00000344920.4,ENST00000505678.2,ENST00000264663.5	chr5	43609244:43609448:43613009:43613239:43615949:43616136,	43613010	43613239	43613188	43613189	Frame_Shift_Ins	-	G	p.GP110fs
TGCT	TCGA-2G-AAKH-01	ZDHHC5	ENST00000287169.3,ENST00000527985.1,ENST00000529480.1	chr11	57464232:57464345:57466030:57466890:57467337:57467835,	57466031	57466890	57466827	57466827	Frame_Shift_Del	A	-	p.Q640fs
TGCT	TCGA-2G-AAKH-01	SETD3	ENST00000331768.5,ENST00000453764.1	chr14	99876140:99876552:99879287:99879402:99880212:99880271,99872852:99872927:99879287:99879402:99880212:99880271,	99879288	99879402	99879294	99879294	Frame_Shift_Del	G	-	p.N281fs
TGCT	TCGA-2G-AAKL-01	CIC	ENST00000575354.2,ENST00000572681.2,ENST00000160740.3	chr19	42795425:42795618:42795709:42795897:42796237:42796359,	42795710	42795897	42795827	42795828	Frame_Shift_Ins	-	C	p.A1848fs
TGCT	TCGA-YU-A94I-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144999684	144999684	Frame_Shift_Del	A	-	p.A1608fs
TGCT	TCGA-YU-A94I-01	CREBBP	ENST00000382070.3	chr16	3860603:3860780:3900297:3901010:3929832:3930121,	3900298	3901010	3900553	3900554	Frame_Shift_Del	AA	-	p.F181fs
TGCT	TCGA-WZ-A7V3-01	SPAG1	ENST00000251809.3,ENST00000388798.2	chr8	101226046:101226146:101232506:101232659:101237400:101237567,	101232507	101232659	101232531	101232532	Frame_Shift_Del	TA	-	p.SM520fs
TGCT	TCGA-2G-AAF6-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
TGCT	TCGA-XY-A89B-01	PSMA6	ENST00000554620.1,ENST00000540871.1,ENST00000261479.4,ENST00000555764.1,ENST00000554541.1	chr14	35779945:35780101:35782086:35782265:35783566:35783661,	35782087	35782265	35782215	35782216	Frame_Shift_Ins	-	A	p.K180fs
TGCT	TCGA-XY-A89B-01	PSMA6	ENST00000553809.1	chr14	35779945:35780101:35782068:35782265:35783566:35783661,	35782069	35782265	35782215	35782216	Frame_Shift_Ins	-	A	p.K180fs
TGCT	TCGA-2G-AALR-01	NFIA	ENST00000371189.4	chr1	61547533:61547719:61548432:61548490:61553820:61554352,	61548433	61548490	61548476	61548477	Frame_Shift_Del	CT	-	p.L5fs
THCA	TCGA-EM-A4FM-01	SENP2	ENST00000444509.1	chr3	185335267:185335399:185337086:185337290:185339613:185339693,185332351:185332528:185337086:185337290:185339613:185339693,	185337087	185337290	185337150	185337150	Frame_Shift_Del	C	-	p.L435fs
THCA	TCGA-EM-A1CW-01	LRP11	ENST00000546019.1	chr6	150164118:150164260:150174138:150174296:150184543:150185162,150164118:150164260:150174138:150174296:150186020:150186199,	150174139	150174296	150174150	150174150	Frame_Shift_Del	C	-	p.V254fs
THCA	TCGA-EM-A22O-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693947	45693947	Frame_Shift_Del	T	-	p.T615fs
THCA	TCGA-EL-A3H1-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133975238:133975319:133978804:133978942:133980038:133980142,	133978805	133978942	133978928	133978929	Frame_Shift_Ins	-	A	p.L1891fs
THCA	TCGA-DJ-A2Q6-01	ST18	ENST00000521824.1,ENST00000276480.7,ENST00000522251.1,ENST00000521582.1	chr8	53055489:53055605:53062291:53062537:53071457:53071669,	53062292	53062537	53062481	53062482	Frame_Shift_Ins	-	T	p.N621fs
THCA	TCGA-H2-A2K9-01	ARAP3	ENST00000513878.1,ENST00000239440.4	chr5	141041250:141041356:141041609:141041822:141044488:141044652,	141041610	141041822	141041612	141041612	Frame_Shift_Del	G	-	p.A1004fs
THCA	TCGA-H2-A2K9-01	ARAP3	ENST00000512390.1	chr5	141039345:141039493:141041250:141041822:141044488:141044652,	141041251	141041822	141041612	141041612	Frame_Shift_Del	G	-	p.A1004fs
THCA	TCGA-EL-A3GP-01	FAAH	ENST00000243167.8	chr1	46876485:46876526:46877283:46877323:46877814:46877923,	46877284	46877323	46877297	46877298	Frame_Shift_Del	CT	-	p.443_444del
THCA	TCGA-EL-A3CL-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827620	72827621	Frame_Shift_Ins	-	T	p.K2073fs
THCA	TCGA-BJ-A28S-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4,ENST00000538146.1	chr10	29770512:29770657:29773584:29773760:29775013:29775159,	29773585	29773760	29773738	29773738	Frame_Shift_Del	C	-	p.S1175fs
THCA	TCGA-BJ-A28S-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50004962	50004962	Frame_Shift_Del	T	-	p.L35fs
THCA	TCGA-BJ-A28S-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50004962	50004962	Frame_Shift_Del	T	-	p.L35fs
THCA	TCGA-BJ-A3EZ-01	LATS1	ENST00000392273.3	chr6	150016209:150016357:150022914:150023402:150038984:150039170,	150022915	150023402	150023002	150023002	Frame_Shift_Del	T	-	p.F88fs
THCA	TCGA-EL-A3ZQ-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133894713:133894857:133895058:133895244:133898692:133899527,	133895059	133895244	133895206	133895207	Frame_Shift_Ins	-	G	p.M346fs
THCA	TCGA-EM-A2CL-01	MPO	ENST00000225275.3,ENST00000340482.3	chr17	56349015:56349253:56350108:56350279:56350774:56350853,	56350109	56350279	56350266	56350266	Frame_Shift_Del	G	-	p.I546fs
THCA	TCGA-EL-A3CT-01	ZC3H18	ENST00000301011.5,ENST00000452588.2	chr16	88689626:88689752:88690365:88690470:88691009:88691153,	88690366	88690470	88690386	88690386	Frame_Shift_Del	C	-	p.S605fs
THCA	TCGA-EM-A1CT-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108175401:108175579:108178623:108178711:108180886:108181042,	108178624	108178711	108178672	108178672	Frame_Shift_Del	C	-	p.T1908fs
THCA	TCGA-ET-A3DS-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679622	21679623	Frame_Shift_Del	AG	-	p.247_248del
THCA	TCGA-ET-A3DS-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679622	21679623	Frame_Shift_Del	AG	-	p.247_248del
THCA	TCGA-ET-A3BW-01	PPM1D	ENST00000305921.3	chr17	58725252:58725443:58733959:58734202:58740355:58741834,	58733960	58734202	58734159	58734159	Frame_Shift_Del	C	-	p.T406fs
THCA	TCGA-EL-A3T9-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727661	137727661	Frame_Shift_Del	G	-	p.P780fs
THCA	TCGA-EL-A3MX-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61735153:61735267:61744299:61744420:61759125:61759259,	61744300	61744420	61744386	61744387	Frame_Shift_Ins	-	C	p.Q187fs
THCA	TCGA-EL-A3D5-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573998	7573999	Frame_Shift_Del	CT	-	p.304_305del
THCA	TCGA-EM-A3FR-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899146	133899149	Frame_Shift_Del	TGAA	-	p.510_511del
THCA	TCGA-BJ-A191-01	NDUFS5	ENST00000372967.3	chr1	39491989:39492070:39494394:39494612:39500063:39500101,	39494395	39494612	39494585	39494586	Frame_Shift_Ins	-	TA	p.F63fs
THCA	TCGA-BJ-A45K-01	CTSH	ENST00000525807.1,ENST00000533777.1,ENST00000220166.5,ENST00000534533.1,ENST00000534237.1	chr15	79217675:79217782:79220054:79220123:79221753:79221835,	79220055	79220123	79220056	79220057	Frame_Shift_Ins	-	T	p.I233fs
THCA	TCGA-EL-A3CU-01	MYH15	ENST00000273353.3	chr3	108099215:108100406:108102441:108102576:108103533:108103629,	108102442	108102576	108102490	108102490	Frame_Shift_Del	T	-	p.S1927fs
THCA	TCGA-EL-A4K2-01	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103269859:103269945:103271212:103271357:103273373:103273487,	103271213	103271357	103271235	103271235	Frame_Shift_Del	A	-	p.T2694fs
THCA	TCGA-IM-A3U2-01	PPP6R3	ENST00000529710.1,ENST00000265636.5	chr11	68326109:68326147:68331770:68331900:68334481:68334634,68326109:68326147:68331770:68331900:68337215:68337365,	68331771	68331900	68331877	68331877	Frame_Shift_Del	G	-	p.H317fs
THCA	TCGA-ET-A3BO-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133980122:133980215:133981702:133981814:133984038:133984118,	133981703	133981814	133981764	133981765	Frame_Shift_Ins	-	AT	p.G1975fs
THCA	TCGA-DJ-A2PY-01	ARHGAP33	ENST00000587447.3,ENST00000314737.5,ENST00000588248.2,ENST00000378944.5,ENST00000593034.1,ENST00000007510.4	chr19	36275854:36276008:36276090:36276236:36276310:36276385,	36276091	36276236	36276206	36276224	Frame_Shift_Del	GGGGGCACCCGTGCCCCAC	-	p.612_618del
THCA	TCGA-DE-A0Y2-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134235	128134238	Frame_Shift_Del	ACTA	-	p.517_518del
THCA	TCGA-DJ-A2Q3-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42265786:42265893:42271118:42271264:42275575:42275857,	42271119	42271264	42271199	42271199	Frame_Shift_Del	C	-	p.Q400fs
THCA	TCGA-ET-A3DV-01	SLA	ENST00000519747.1,ENST00000523610.1,ENST00000518594.1,ENST00000520106.1,ENST00000338087.5,ENST00000519341.1,ENST00000522002.1	chr8	134063136:134063160:134072344:134072445:134087097:134087198,	134072345	134072445	134072405	134072408	Frame_Shift_Del	TTTC	-	p.17_18del
THCA	TCGA-IM-A3U3-01	TG	ENST00000542445.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133931684:133931770:133935582:133935753:133941320:133941437,	133935583	133935753	133935742	133935743	Frame_Shift_Del	CA	-	p.1563_1563del
THCA	TCGA-DJ-A3VM-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000588772.1	chr18	76914503:76914555:76936812:76936907:76953182:76953263,	76936813	76936907	76936903	76936904	Frame_Shift_Del	TG	-	p.290_290del
THCA	TCGA-EM-A2CO-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38418776:38418893:38420741:38421398:38430041:38430251,	38420742	38421398	38420969	38420969	Frame_Shift_Del	C	-	p.P182fs
THCA	TCGA-FE-A3PB-01	CACNA2D1	ENST00000443883.1	chr7	81626494:81626566:81630974:81631031:81634738:81634813,81626494:81626551:81630974:81631031:81634738:81634813,	81630975	81631031	81630992	81630992	Frame_Shift_Del	T	-	p.R545fs
THCA	TCGA-EL-A4K0-01	NELL2	ENST00000551601.1,ENST00000549027.1	chr12	45269124:45269136:45269289:45269422:45269597:45269683,	45269290	45269422	45269298	45269298	Frame_Shift_Del	A	-	p.L15fs
THCA	TCGA-BJ-A4O8-01	FAAH2	ENST00000374900.4	chrX	57337025:57337162:57358030:57358240:57367703:57367823,	57358031	57358240	57358200	57358200	Frame_Shift_Del	C	-	p.N195fs
THCA	TCGA-EM-A4FM-01	SENP2	ENST00000444509.1	chr3	185335267:185335399:185337086:185337290:185339613:185339693,185332351:185332528:185337086:185337290:185339613:185339693,	185337087	185337290	185337150	185337150	Frame_Shift_Del	C	-	p.H436fs
THCA	TCGA-DO-A1JZ-01	PADI2	ENST00000375486.4,ENST00000375481.1	chr1	17410220:17410332:17411093:17411197:17413015:17413194,	17411094	17411197	17411155	17411155	Frame_Shift_Del	G	-	p.R293fs
THCA	TCGA-DO-A1JZ-01	PNPLA8	ENST00000257694.8,ENST00000388728.5	chr7	108154725:108154737:108154879:108156018:108166472:108166564,108154587:108154737:108154879:108156018:108161919:108161965,	108154880	108156018	108155503	108155504	Frame_Shift_Ins	-	C	p.CK144fs
THCA	TCGA-DO-A1JZ-01	PNPLA8	ENST00000453144.1	chr7	108154587:108154737:108154879:108155891:108161919:108161965,108154725:108154737:108154879:108155891:108166472:108166564,	108154880	108155891	108155503	108155504	Frame_Shift_Ins	-	C	p.CK144fs
THCA	TCGA-DO-A1JZ-01	ADAM28	ENST00000397649.3,ENST00000520448.1	chr8	24201018:24201097:24207376:24207485:24208744:24208799,24201018:24201101:24207376:24207485:24208744:24208799,	24207377	24207485	24207413	24207414	Frame_Shift_Ins	-	G	p.G676fs
THCA	TCGA-DO-A1JZ-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000565605.1,ENST00000569240.1	chr16	58622724:58622810:58633139:58633415:58663631:58663719,	58633140	58633415	58633164	58633165	Frame_Shift_Ins	-	C	p.R26fs
THCA	TCGA-BJ-A2N9-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
THCA	TCGA-DJ-A3VM-01	ATP9B	ENST00000426216.2,ENST00000307671.7,ENST00000588772.1	chr18	76914503:76914555:76936812:76936907:76953182:76953263,	76936813	76936907	76936903	76936904	Frame_Shift_Del	TG	-	p.L290fs
THCA	TCGA-DJ-A1QN-01	AUP1	ENST00000425118.1,ENST00000466894.1	chr2	74753872:74753963:74754067:74754248:74754374:74754490,	74754068	74754248	74754147	74754147	Frame_Shift_Del	G	-	p.L373fs
THCA	TCGA-DJ-A1QN-01	AUP1	ENST00000463900.1,ENST00000377526.3	chr2	74753872:74753963:74754067:74754186:74754374:74754490,	74754068	74754186	74754147	74754147	Frame_Shift_Del	G	-	p.L373fs
THCA	TCGA-ET-A2N0-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023941	64023941	Frame_Shift_Del	T	-	p.R91fs
THCA	TCGA-MK-A84Z-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12904547:12904672:12923486:12923660:12946458:12946599,	12923487	12923660	12923583	12923583	Frame_Shift_Del	T	-	p.F251fs
THCA	TCGA-E8-A414-01	LSM14A	ENST00000540746.2,ENST00000588582.2,ENST00000544216.3,ENST00000586157.1,ENST00000433627.5	chr19	34706500:34706566:34710295:34710478:34710610:34710782,	34710296	34710478	34710340	34710340	Frame_Shift_Del	C	-	p.R276fs
THCA	TCGA-BJ-A191-01	NDUFS5	ENST00000372967.3	chr1	39491989:39492070:39494394:39494612:39500063:39500101,	39494395	39494612	39494585	39494586	Frame_Shift_Ins	-	TA	p.R64fs
THCA	TCGA-EL-A3CR-01	HMGB1	ENST00000326004.4,ENST00000341423.5	chr13	31037347:31037489:31037667:31037831:31039932:31040051,	31037668	31037831	31037690	31037690	Frame_Shift_Del	T	-	p.K44fs
THCA	TCGA-DJ-A4UQ-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5430115:5430259:5434070:5434226:5460690:5461120,	5434071	5434226	5434124	5434124	Frame_Shift_Del	G	-	p.P97fs
THCA	TCGA-EL-A3ZG-01	LPCAT3	ENST00000261407.4,ENST00000536797.1,ENST00000543794.1	chr12	7091836:7091943:7092592:7092700:7125577:7125778,	7092593	7092700	7092661	7092661	Frame_Shift_Del	T	-	p.Y64fs
THCA	TCGA-EM-A2CL-01	MPO	ENST00000225275.3,ENST00000340482.3	chr17	56349015:56349253:56350108:56350279:56350774:56350853,	56350109	56350279	56350266	56350266	Frame_Shift_Del	G	-	p.P577fs
THCA	TCGA-ET-A4KQ-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-J8-A4HY-01	VARS2	ENST00000416670.2,ENST00000477288.1,ENST00000542001.1,ENST00000541562.1,ENST00000321897.5	chr6	30884881:30885001:30885471:30885583:30886603:30886692,	30885472	30885583	30885522	30885522	Frame_Shift_Del	C	-	p.C308fs
THCA	TCGA-J8-A4HY-01	MROH6	ENST00000533679.1	chr8	144650322:144650431:144650721:144650889:144651610:144651784,144649955:144650058:144650721:144650889:144651610:144651784,	144650722	144650889	144650732	144650733	Frame_Shift_Ins	-	CC	p.R545fs
THCA	TCGA-EM-A3FR-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899146	133899149	Frame_Shift_Del	TGAA	-	p.LN510fs
THCA	TCGA-ET-A40T-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479332	100479332	Frame_Shift_Del	G	-	p.G106fs
THCA	TCGA-DJ-A3V9-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763923	74763924	Frame_Shift_Ins	-	C	p.A275fs
THCA	TCGA-EM-A2CP-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
THCA	TCGA-EL-A3ZQ-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133894713:133894857:133895058:133895244:133898692:133899527,	133895059	133895244	133895206	133895207	Frame_Shift_Ins	-	G	p.T346fs
THCA	TCGA-IM-A4EB-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-DJ-A1QI-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
THCA	TCGA-ET-A3BN-01	SF3A3	ENST00000448721.2,ENST00000373019.4	chr1	38442555:38442625:38444391:38444499:38444659:38444727,	38444392	38444499	38444416	38444416	Frame_Shift_Del	T	-	p.N304fs
THCA	TCGA-EL-A3ZO-01	FAM3C	ENST00000359943.3,ENST00000412653.1,ENST00000426156.1	chr7	121000145:121000181:121002950:121003001:121004183:121004242,	121002951	121003001	121002954	121002955	Frame_Shift_Ins	-	T	p.R127fs
THCA	TCGA-ET-A2N4-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
THCA	TCGA-FY-A40N-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-DJ-A3UU-01	PIGB	ENST00000565367.1,ENST00000539642.1,ENST00000164305.5	chr15	55626064:55626205:55631464:55631516:55632809:55633021,	55631465	55631516	55631503	55631503	Frame_Shift_Del	T	-	p.I278fs
THCA	TCGA-EM-A4FH-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-EM-A4FH-01	MUC3A	ENST00000319509.7,ENST00000483133.1,ENST00000414964.1	chr7	100608728:100608891:100609538:100609712:100609804:100609896,	100609539	100609712	100609618	100609619	Frame_Shift_Ins	-	T	p.D784fs
THCA	TCGA-FY-A3ON-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
THCA	TCGA-FY-A3ON-01	DNMT3A	ENST00000482935.1,ENST00000402667.1,ENST00000321117.5,ENST00000461228.1,ENST00000474887.1,ENST00000466601.1,ENST00000264709.3,ENST00000380746.4	chr2	25462044:25462084:25463170:25463319:25463508:25463599,	25463171	25463319	25463196	25463197	Frame_Shift_Del	TT	-	p.K766fs
THCA	TCGA-E8-A242-01	KAT2B	ENST00000426228.1	chr3	20082189:20082272:20113824:20113951:20136754:20136900,	20113825	20113951	20113852	20113853	Frame_Shift_Ins	-	G	p.E111fs
THCA	TCGA-EM-A1CU-01	VAV2	ENST00000406606.3	chr9	136633563:136633718:136635499:136635623:136637080:136637168,	136635500	136635623	136635556	136635556	Frame_Shift_Del	T	-	p.K754fs
THCA	TCGA-EL-A4K6-01	ARHGAP32	ENST00000525234.1	chr11	128994697:128994789:129034213:129034322:129149040:129149219,	129034214	129034322	129034263	129034263	Frame_Shift_Del	T	-	p.N59fs
THCA	TCGA-ET-A2MX-01	PATL1	ENST00000300146.9	chr11	59422995:59423213:59423428:59423518:59423971:59424073,	59423429	59423518	59423492	59423492	Frame_Shift_Del	A	-	p.F250fs
THCA	TCGA-E3-A3DZ-01	NEXN	ENST00000401035.3,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78383812:78383958:78390872:78390914:78392098:78392296,	78390873	78390914	78390884	78390887	Frame_Shift_Del	AAAC	-	p.IN89fs
THCA	TCGA-BJ-A28S-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4,ENST00000538146.1	chr10	29770512:29770657:29773584:29773760:29775013:29775159,	29773585	29773760	29773738	29773738	Frame_Shift_Del	C	-	p.S1601fs
THCA	TCGA-ET-A3DS-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679622	21679623	Frame_Shift_Del	AG	-	p.S247fs
THCA	TCGA-ET-A3DS-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679622	21679623	Frame_Shift_Del	AG	-	p.S247fs
THCA	TCGA-J8-A42S-01	ESPN	ENST00000475228.1,ENST00000377828.1,ENST00000416731.1,ENST00000434576.1,ENST00000461727.1	chr1	6511717:6511808:6511892:6512156:6517243:6517323,	6511893	6512156	6512140	6512140	Frame_Shift_Del	A	-	p.E771fs
THCA	TCGA-EL-A3CL-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827620	72827621	Frame_Shift_Ins	-	T	p.K2987fs
THCA	TCGA-EM-A4FV-01	GSTO2	ENST00000338595.2,ENST00000401888.2,ENST00000450629.2	chr10	106034677:106034707:106034983:106035092:106037651:106037776,	106034984	106035092	106035045	106035045	Frame_Shift_Del	C	-	p.C32fs
THCA	TCGA-EM-A22O-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693947	45693947	Frame_Shift_Del	T	-	p.T616fs
THCA	TCGA-DE-A0Y2-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1	chr6	128040832:128040968:128134027:128135076:128150620:128151079,	128134028	128135076	128134235	128134238	Frame_Shift_Del	ACTA	-	p.VS437fs
THCA	TCGA-FY-A4B0-01	EFCAB14	ENST00000371933.3	chr1	47173577:47173723:47181966:47182115:47183574:47184736,	47181967	47182115	47182006	47182007	Frame_Shift_Ins	-	AA	p.G99fs
THCA	TCGA-DJ-A3US-01	ILDR2	ENST00000528703.1,ENST00000525740.1,ENST00000526687.1,ENST00000529071.1,ENST00000271417.3	chr1	166888102:166888627:166889943:166890616:166891829:166892046,	166889944	166890616	166889963	166889963	Frame_Shift_Del	T	-	p.K622fs
THCA	TCGA-BJ-A0Z0-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711928	89711928	Frame_Shift_Del	A	-	p.L182fs
THCA	TCGA-EL-A3CU-01	MYH15	ENST00000273353.3	chr3	108099215:108100406:108102441:108102576:108103533:108103629,	108102442	108102576	108102490	108102490	Frame_Shift_Del	T	-	p.E1926fs
THCA	TCGA-KS-A41I-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
THCA	TCGA-CE-A27D-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682289	85682290	Frame_Shift_Ins	-	C	p.P120fs
THCA	TCGA-EL-A3H2-01	CAMK2B	ENST00000395749.2	chr7	44268394:44268523:44268986:44269100:44270604:44270653,	44268987	44269100	44269096	44269096	Frame_Shift_Del	G	-	p.P410fs
THCA	TCGA-FE-A22Z-01	MMS19	ENST00000434538.1,ENST00000327277.7,ENST00000438925.2,ENST00000495415.1,ENST00000355839.6,ENST00000370782.2,ENST00000415383.1,ENST00000327238.10,ENST00000480108.1	chr10	99219829:99219989:99220451:99220508:99220663:99220764,	99220452	99220508	99220481	99220481	Frame_Shift_Del	G	-	p.H814fs
THCA	TCGA-FK-A4UB-01	MLXIPL	ENST00000488212.1,ENST00000429400.2,ENST00000414749.2,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3	chr7	73020017:73020098:73020239:73020441:73021303:73021348,	73020240	73020441	73020366	73020366	Frame_Shift_Del	C	-	p.D232fs
THCA	TCGA-FY-A3W9-01	GGA1	ENST00000381756.5	chr22	38010200:38010281:38012928:38013055:38014454:38014522,	38012929	38013055	38013055	38013055	Frame_Shift_Del	G	-	p.K85fs
THCA	TCGA-IM-A3U2-01	PPP6R3	ENST00000529710.1,ENST00000265636.5	chr11	68326109:68326147:68331770:68331900:68334481:68334634,68326109:68326147:68331770:68331900:68337215:68337365,	68331771	68331900	68331877	68331877	Frame_Shift_Del	G	-	p.E318fs
THCA	TCGA-IM-A3U2-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514604	75514604	Frame_Shift_Del	T	-	p.K585fs
THCA	TCGA-EM-A22Q-01	PPIL6	ENST00000440797.2,ENST00000447468.3	chr6	109752493:109752548:109757306:109757402:109761658:109761707,	109757307	109757402	109757309	109757309	Frame_Shift_Del	T	-	p.R77fs
THCA	TCGA-EL-A3GX-01	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081695	144081696	Frame_Shift_Ins	-	A	p.IK193fs
THCA	TCGA-KS-A4ID-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-ET-A3BX-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
THCA	TCGA-EL-A3T2-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
THCA	TCGA-KS-A41F-01	FARP1	ENST00000601009.1,ENST00000595437.1,ENST00000376586.2,ENST00000595380.1,ENST00000319562.6	chr13	99036983:99037098:99037920:99038068:99040636:99040732,	99037921	99038068	99038023	99038023	Frame_Shift_Del	G	-	p.T238fs
THCA	TCGA-DJ-A3V7-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5399028:5399200:5401224:5401353:5401527:5401658,	5401225	5401353	5401259	5401259	Frame_Shift_Del	G	-	p.R1543fs
THCA	TCGA-H2-A422-01	PLEKHN1	ENST00000379409.2,ENST00000379407.3,ENST00000379410.3	chr1	907454:907530:907667:907804:908240:908390,	907668	907804	907763	907764	Frame_Shift_Ins	-	C	p.P373fs
THCA	TCGA-H2-A422-01	SNED1	ENST00000342631.6,ENST00000401884.1,ENST00000310397.8,ENST00000405547.3,ENST00000466618.1	chr2	242009455:242009616:242010990:242011135:242011210:242011293,	242010991	242011135	242011113	242011116	Frame_Shift_Del	GAGA	-	p.ET1238fs
THCA	TCGA-H2-A422-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
THCA	TCGA-EM-A3FM-01	LARP1	ENST00000518297.1,ENST00000524248.1,ENST00000336314.4	chr5	154179459:154179602:154181566:154181959:154182849:154182973,	154181567	154181959	154181822	154181822	Frame_Shift_Del	G	-	p.G582fs
THCA	TCGA-EM-A3FM-01	DNAH8	ENST00000327475.6,ENST00000373278.4,ENST00000449981.2	chr6	38691112:38691247:38697677:38697762:38702249:38702290,	38697678	38697762	38697694	38697695	Frame_Shift_Ins	-	T	p.I181fs
THCA	TCGA-FY-A3R6-01	TNK2	ENST00000489628.1	chr3	195595500:195595580:195596984:195597249:195599146:195599201,	195596985	195597249	195597006	195597006	Frame_Shift_Del	G	-	p.Q508fs
THCA	TCGA-FY-A3R6-01	TNK2	ENST00000411741.1,ENST00000478623.1,ENST00000392400.1,ENST00000424563.1,ENST00000428187.1,ENST00000333602.6	chr3	195595500:195595580:195596984:195597076:195599146:195599201,	195596985	195597076	195597006	195597006	Frame_Shift_Del	G	-	p.Q508fs
THCA	TCGA-EM-A22M-01	WHAMM	ENST00000286760.4	chr15	83481854:83482028:83485443:83485594:83486671:83486841,	83485444	83485594	83485581	83485581	Frame_Shift_Del	A	-	p.V307fs
THCA	TCGA-EL-A3CX-01	MMRN1	ENST00000508372.1,ENST00000264790.2,ENST00000394980.1	chr4	90848948:90849119:90855960:90857949:90872755:90872902,	90855961	90857949	90857420	90857421	Frame_Shift_Del	AG	-	p.QD863fs
THCA	TCGA-E8-A417-01	PUSL1	ENST00000470520.1	chr1	1244833:1244983:1245085:1245231:1246013:1246068,	1245086	1245231	1245216	1245216	Frame_Shift_Del	C	-	p.T210fs
THCA	TCGA-E8-A417-01	PUSL1	ENST00000467712.1,ENST00000379031.5	chr1	1244833:1244983:1245060:1245231:1246013:1246068,	1245061	1245231	1245216	1245216	Frame_Shift_Del	C	-	p.T210fs
THCA	TCGA-EM-A3SY-01	LYRM7	ENST00000507584.1	chr5	130515787:130515860:130517921:130517992:130522720:130522802,130515787:130515860:130517921:130517992:130535223:130535346,	130517922	130517992	130517950	130517951	Frame_Shift_Ins	-	A	p.LK40fs
THCA	TCGA-EM-A3SY-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000517666.1	chr8	124349864:124350061:124351550:124351686:124357123:124357309,	124351551	124351686	124351559	124351559	Frame_Shift_Del	T	-	p.K950fs
THCA	TCGA-EM-A3O8-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
THCA	TCGA-EL-A3T8-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
THCA	TCGA-DJ-A3UT-01	TG	ENST00000377869.1,ENST00000220616.4	chr8	133895058:133895244:133898692:133899793:133900228:133900813,	133898693	133899793	133899011	133899012	Frame_Shift_Del	AG	-	p.K465fs
THCA	TCGA-J8-A3YH-06	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831847	72831866	Frame_Shift_Del	TTGAAGGGCTCTCTTTAACT	-	p.KLKRALQ1572fs
THCA	TCGA-J8-A3YH-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831847	72831866	Frame_Shift_Del	TTGAAGGGCTCTCTTTAACT	-	p.KLKRALQ1572fs
THCA	TCGA-DJ-A3V8-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-EL-A4K2-01	UBR5	ENST00000220959.4,ENST00000518205.1,ENST00000520539.1,ENST00000521922.1	chr8	103269859:103269945:103271212:103271357:103273373:103273487,	103271213	103271357	103271235	103271235	Frame_Shift_Del	A	-	p.F2693fs
THCA	TCGA-E8-A44K-01	FANCG	ENST00000378643.3,ENST00000448890.1	chr9	35078601:35078733:35079147:35079238:35079437:35079532,	35079148	35079238	35079179	35079179	Frame_Shift_Del	T	-	p.E48fs
THCA	TCGA-E8-A432-01	KAT5	ENST00000377046.3,ENST00000352980.4,ENST00000534650.1,ENST00000530446.1,ENST00000341318.4	chr11	65482291:65482381:65484137:65484278:65484359:65484453,	65484138	65484278	65484145	65484145	Frame_Shift_Del	C	-	p.S346fs
THCA	TCGA-EL-A3GO-01	TECPR1	ENST00000479911.1,ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000490842.1	chr7	97857325:97857428:97858350:97858478:97860272:97860430,	97858351	97858478	97858474	97858474	Frame_Shift_Del	A	-	p.W763fs
THCA	TCGA-EL-A3GO-01	DYNC2H1	ENST00000398093.3,ENST00000375735.2	chr11	103027116:103027499:103029405:103029538:103029638:103029756,	103029406	103029538	103029464	103029464	Frame_Shift_Del	G	-	p.G1396fs
THCA	TCGA-DJ-A4UT-01	SYT5	ENST00000589172.1,ENST00000537500.1,ENST00000354308.3,ENST00000592470.1	chr19	55687372:55687492:55689563:55689736:55690330:55690433,	55689564	55689736	55689729	55689729	Frame_Shift_Del	G	-	p.P29fs
THCA	TCGA-DJ-A2Q3-01	LYPD6B	ENST00000450639.1	chr2	149987396:149987467:150017277:150017349:150061766:150061836,149987396:149987467:150017277:150017349:150043939:150044093,	150017278	150017349	150017336	150017336	Frame_Shift_Del	T	-	p.F22fs
THCA	TCGA-DJ-A2Q3-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968044	5968044	Frame_Shift_Del	T	-	p.K729fs
THCA	TCGA-DJ-A2Q3-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42265786:42265893:42271118:42271264:42275575:42275857,	42271119	42271264	42271199	42271199	Frame_Shift_Del	C	-	p.Q401fs
THCA	TCGA-FK-A3SE-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000504194.1,ENST00000382788.3,ENST00000338806.4	chr4	3429825:3429896:3430284:3430438:3432133:3432174,	3430285	3430438	3430399	3430399	Frame_Shift_Del	A	-	p.K1178fs
THCA	TCGA-DJ-A2QA-01	SNX13	ENST00000428135.3,ENST00000496855.1,ENST00000409389.1,ENST00000409076.2	chr7	17854456:17854567:17855804:17855912:17861131:17861271,	17855805	17855912	17855871	17855872	Frame_Shift_Ins	-	T	p.N640fs
THCA	TCGA-FE-A230-01	RYK	ENST00000460933.1	chr3	133910692:133910818:133913925:133914026:133921573:133921718,	133913926	133914026	133913947	133913948	Frame_Shift_Ins	-	G	p.Q98fs
THCA	TCGA-BJ-A28X-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.M75fs
THCA	TCGA-BJ-A28X-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
THCA	TCGA-EM-A1YB-01	DPY19L4	ENST00000414645.2	chr8	95732127:95732242:95738558:95738669:95750596:95750687,95732127:95732242:95738558:95738669:95746857:95746982,	95738559	95738669	95738654	95738657	Frame_Shift_Del	GAAA	-	p.ER38fs
THCA	TCGA-ET-A3DV-01	SLA	ENST00000519747.1,ENST00000523610.1,ENST00000518594.1,ENST00000520106.1,ENST00000338087.5,ENST00000519341.1,ENST00000522002.1	chr8	134063136:134063160:134072344:134072445:134087097:134087198,	134072345	134072445	134072405	134072408	Frame_Shift_Del	TTTC	-	p.EM17fs
THCA	TCGA-EL-A4KD-01	MAGED1	ENST00000375722.1,ENST00000485420.1	chrX	51636753:51636851:51637371:51637445:51638148:51638340,	51637372	51637445	51637442	51637442	Frame_Shift_Del	C	-	p.F14fs
THCA	TCGA-EL-A4KD-01	MAGED1	ENST00000326587.7,ENST00000494718.1	chrX	51636753:51636851:51637364:51637445:51638148:51638340,	51637365	51637445	51637442	51637442	Frame_Shift_Del	C	-	p.F14fs
THCA	TCGA-BJ-A192-01	MSI1	ENST00000257552.2	chr12	120802516:120802558:120805810:120805895:120805994:120806076,	120805811	120805895	120805884	120805884	Frame_Shift_Del	A	-	p.F65fs
THCA	TCGA-L6-A4EU-01	C2orf73	ENST00000398634.2	chr2	54558123:54558138:54561953:54562161:54570856:54571010,	54561954	54562161	54562140	54562141	Frame_Shift_Ins	-	A	p.PK71fs
THCA	TCGA-L6-A4EU-01	SLC35F5	ENST00000409106.1,ENST00000245680.2	chr2	114493353:114493435:114500268:114500456:114501289:114501371,	114500269	114500456	114500277	114500277	Frame_Shift_Del	A	-	p.C248fs
THCA	TCGA-DJ-A2QB-01	DUOX2	ENST00000603300.1,ENST00000389039.6,ENST00000558383.1	chr15	45398725:45398839:45399029:45399167:45399542:45399661,	45399030	45399167	45399037	45399037	Frame_Shift_Del	A	-	p.L608fs
THCA	TCGA-DJ-A3V0-01	RGP1	ENST00000378078.4,ENST00000496906.1,ENST00000456972.2	chr9	35751623:35751751:35751952:35752142:35752647:35752799,	35751953	35752142	35752094	35752103	Frame_Shift_Del	TCCCTCCCAA	-	p.SLPI302fs
THCA	TCGA-BJ-A28V-01	CD46	ENST00000441839.2,ENST00000358170.2,ENST00000322875.4,ENST00000357714.1,ENST00000367041.1,ENST00000360212.2,ENST00000322918.5,ENST00000354848.1,ENST00000361067.1,ENST00000480003.1,ENST00000367042.1,ENST00000367047.1	chr1	207932983:207933069:207934593:207934791:207940357:207940462,	207934594	207934791	207934709	207934724	Frame_Shift_Del	AGATCCATTTTCACTT	-	p.PDPFSL197fs
THCA	TCGA-BJ-A3EZ-01	LATS1	ENST00000392273.3	chr6	150016209:150016357:150022914:150023402:150038984:150039170,	150022915	150023402	150023002	150023002	Frame_Shift_Del	T	-	p.P87fs
THCA	TCGA-H2-A3RI-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51159933	51159933	Frame_Shift_Del	G	-	p.L1210fs
THCA	TCGA-ET-A3BO-01	TG	ENST00000542445.1,ENST00000377869.1,ENST00000519543.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133980122:133980215:133981702:133981814:133984038:133984118,	133981703	133981814	133981764	133981765	Frame_Shift_Ins	-	AT	p.I1976fs
THCA	TCGA-ET-A3BV-01	TGOLN2	ENST00000282120.2,ENST00000398263.2,ENST00000377386.3	chr2	85545149:85549864:85552037:85552121:85553630:85553927,	85552038	85552121	85552043	85552043	Frame_Shift_Del	G	-	p.Q435fs
THCA	TCGA-EM-A22J-01	BCAT1	ENST00000261192.7,ENST00000539780.1,ENST00000342945.5,ENST00000538118.1,ENST00000539282.1	chr12	24982756:24982831:24985656:24985797:24989444:24989530,	24985657	24985797	24985718	24985719	Frame_Shift_Ins	-	TC	p.V328fs
THCA	TCGA-FY-A3R8-01	SOBP	ENST00000317357.5	chr6	107827445:107827631:107854662:107854814:107908283:107908379,	107854663	107854814	107854783	107854784	Frame_Shift_Ins	-	CTGCCGA	p.V181fs
THCA	TCGA-ET-A3BS-01	MUC16	ENST00000599436.1,ENST00000380951.5,ENST00000596768.1,ENST00000397910.4,ENST00000601404.1	chr19	8961951:8962031:8962353:8962395:8966649:8966816,	8962354	8962395	8962361	8962361	Frame_Shift_Del	C	-	p.G14446fs
THCA	TCGA-EM-A3FJ-01	TBKBP1	ENST00000361722.3	chr17	45785759:45785878:45786090:45786818:45787863:45789416,	45786091	45786818	45786123	45786124	Frame_Shift_Ins	-	C	p.P342fs
THCA	TCGA-DJ-A13P-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
THCA	TCGA-DE-A4MD-06	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-DE-A4MD-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-FY-A3I4-01	TRIM26	ENST00000453195.1,ENST00000454678.2,ENST00000437089.1	chr6	30156943:30156976:30157194:30157310:30157789:30157812,	30157195	30157310	30157254	30157254	Frame_Shift_Del	T	-	p.K282fs
THCA	TCGA-IM-A3ED-01	EMC10	ENST00000601780.1,ENST00000376918.3	chr19	50984140:50984234:50985117:50985204:50985405:50985419,	50985118	50985204	50985131	50985132	Frame_Shift_Ins	-	G	p.R231fs
THCA	TCGA-KS-A4IB-01	PLEKHN1	ENST00000379409.2,ENST00000379407.3	chr1	901881:901994:902083:902183:905656:905803,	902084	902183	902110	902113	Frame_Shift_Del	GCCT	-	p.GL37fs
THCA	TCGA-EM-A3ST-01	MTSS1L	ENST00000338779.6	chr16	70698822:70698999:70699368:70699443:70708208:70708262,	70699369	70699443	70699375	70699375	Frame_Shift_Del	G	-	p.P374fs
THCA	TCGA-DJ-A3UO-01	UBA3	ENST00000465627.1,ENST00000465108.1,ENST00000349511.4,ENST00000361055.4	chr3	69120685:69120768:69124580:69124661:69126948:69127069,	69124581	69124661	69124604	69124605	Frame_Shift_Ins	-	TAAG	p.LM80fs
THCA	TCGA-FY-A3R9-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
THCA	TCGA-DJ-A1QD-01	CORO1B	ENST00000539724.1,ENST00000393893.1,ENST00000341356.5,ENST00000537042.1	chr11	67205753:67205972:67206141:67206420:67207256:67207314,	67206142	67206420	67206198	67206199	Frame_Shift_Ins	-	G	p.L430fs
THCA	TCGA-DJ-A4V2-01	CD74	ENST00000518797.1,ENST00000009530.7	chr5	149782166:149782188:149784242:149784330:149784647:149784725,149782683:149782875:149784242:149784330:149784647:149784743,	149784243	149784330	149784320	149784321	Frame_Shift_Del	CT	-	p.S183fs
THCA	TCGA-EM-A2CJ-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60688968	60688969	Frame_Shift_Ins	-	G	p.P360fs
THCA	TCGA-EM-A2CJ-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60688968	60688969	Frame_Shift_Ins	-	G	p.P360fs
THCA	TCGA-EM-A2CJ-01	TTC16	ENST00000373289.3	chr9	130486398:130486643:130487034:130487176:130488517:130488581,	130487035	130487176	130487098	130487098	Frame_Shift_Del	T	-	p.L394fs
THCA	TCGA-EL-A4K7-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67699720	67699721	Frame_Shift_Del	TT	-	p.F759fs
THCA	TCGA-EL-A4K7-01	CAND1	ENST00000545606.1	chr12	67698384:67698526:67698883:67700377:67701176:67701272,	67698884	67700377	67700155	67700155	Frame_Shift_Del	C	-	p.P903fs
THCA	TCGA-DJ-A3VD-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693722	Frame_Shift_Del	T	-	p.S690fs
THCA	TCGA-DJ-A3VD-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
THCA	TCGA-DJ-A1QE-01	CORO1B	ENST00000539724.1,ENST00000393893.1,ENST00000341356.5,ENST00000537042.1	chr11	67205753:67205972:67206141:67206420:67207256:67207314,	67206142	67206420	67206198	67206199	Frame_Shift_Ins	-	G	p.L430fs
THCA	TCGA-IM-A3U3-01	TG	ENST00000542445.1,ENST00000523756.1,ENST00000220616.4,ENST00000519178.1	chr8	133931684:133931770:133935582:133935753:133941320:133941437,	133935583	133935753	133935742	133935743	Frame_Shift_Del	CA	-	p.S1563fs
THCA	TCGA-EL-A3GP-01	FAAH	ENST00000243167.8	chr1	46876485:46876526:46877283:46877323:46877814:46877923,	46877284	46877323	46877297	46877298	Frame_Shift_Del	CT	-	p.L444fs
THCA	TCGA-EL-A3GU-01	SDCCAG8	ENST00000355875.4,ENST00000366541.3,ENST00000343783.6,ENST00000391846.1,ENST00000435549.1	chr1	243468014:243468079:243471290:243471479:243480056:243480144,	243471291	243471479	243471455	243471476	Frame_Shift_Del	TGCAGACCATCGAAAGACTGGT	-	p.MQTIERLV302fs
THCA	TCGA-E3-A3DY-01	PLEKHA6	ENST00000414478.1,ENST00000272203.3	chr1	204191233:204191907:204192589:204192713:204197210:204197356,	204192590	204192713	204192635	204192635	Frame_Shift_Del	G	-	p.P1037fs
THCA	TCGA-E3-A3DY-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.IK1388fs
THCA	TCGA-IM-A420-01	EHBP1L1	ENST00000309295.4	chr11	65348688:65348844:65349009:65351236:65351711:65351869,	65349010	65351236	65349139	65349140	Frame_Shift_Del	AG	-	p.PA332fs
THCA	TCGA-IM-A420-01	EHBP1L1	ENST00000533237.1	chr11	65348688:65348844:65349009:65349487:65351711:65351869,	65349010	65349487	65349139	65349140	Frame_Shift_Del	AG	-	p.PA332fs
THCA	TCGA-DJ-A1QL-01	RNF145	ENST00000424310.2	chr5	158621723:158621832:158630441:158630664:158636238:158636559,	158630442	158630664	158630630	158630630	Frame_Shift_Del	T	-	p.N28fs
THCA	TCGA-FE-A233-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
THCA	TCGA-KS-A4I5-01	MUC6	ENST00000421673.2	chr11	1030212:1030335:1030572:1030780:1030946:1031056,	1030573	1030780	1030583	1030583	Frame_Shift_Del	G	-	p.P294fs
THCA	TCGA-EL-A3D5-01	TP53	ENST00000445888.2,ENST00000269305.4,ENST00000504937.1	chr17	7572886:7573008:7573926:7574033:7576852:7576905,	7573927	7574033	7573998	7573999	Frame_Shift_Del	CT	-	p.E343fs
THCA	TCGA-EL-A3MX-01	OGFOD1	ENST00000336111.5,ENST00000566157.1	chr16	56501076:56501205:56501816:56501930:56503914:56503994,	56501817	56501930	56501895	56501895	Frame_Shift_Del	G	-	p.E289fs
THCA	TCGA-EL-A3MX-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831862	72831863	Frame_Shift_Ins	-	A	p.*1573fs
THCA	TCGA-EL-A3MX-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61735153:61735267:61744299:61744420:61759125:61759259,	61744300	61744420	61744386	61744387	Frame_Shift_Ins	-	C	p.HP187fs
THCA	TCGA-E3-A3E2-01	ISYNA1	ENST00000577820.1,ENST00000545187.1	chr19	18547190:18547289:18547493:18547687:18547782:18547915,18547190:18547289:18547493:18547687:18548669:18548798,	18547494	18547687	18547527	18547528	Frame_Shift_Del	CG	-	p.A42fs
THCA	TCGA-E8-A434-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-E8-A434-01	NELFA	ENST00000467661.1,ENST00000333877.4,ENST00000382882.3,ENST00000411638.2,ENST00000416258.1,ENST00000542778.1,ENST00000463820.1	chr4	1985574:1985840:1986534:1986646:1987502:1987591,	1986535	1986646	1986563	1986563	Frame_Shift_Del	G	-	p.S347fs
THCA	TCGA-E8-A3X7-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-E8-A3X7-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000525495.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1	chr17	45235571:45235669:45247282:45247408:45258927:45258971,45235571:45235669:45247282:45247408:45249282:45249413,	45247283	45247408	45247389	45247389	Frame_Shift_Del	T	-	p.I91fs
THCA	TCGA-EL-A3MZ-01	AP3M2	ENST00000521280.1	chr8	42010602:42010623:42015458:42015630:42019798:42019936,	42015459	42015630	42015502	42015514	Frame_Shift_Del	TAGTTGTGGTTTA	-	p.VVVVY106fs
THCA	TCGA-EL-A3MZ-01	MIS18BP1	ENST00000454990.1	chr14	45711963:45712077:45715945:45716580:45722237:45722380,	45715946	45716580	45716018	45716019	Frame_Shift_Ins	-	T	p.NA157fs
THCA	TCGA-EM-A4FN-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
THCA	TCGA-BJ-A2NA-01	SIRT2	ENST00000462654.1,ENST00000249396.7,ENST00000392081.2	chr19	39370073:39370140:39370271:39370342:39371324:39371376,	39370272	39370342	39370317	39370317	Frame_Shift_Del	A	-	p.M301fs
THCA	TCGA-J8-A3O1-01	DLEC1	ENST00000452631.2,ENST00000308059.6,ENST00000478428.1,ENST00000346219.3	chr3	38159296:38159515:38161938:38162100:38163118:38163272,	38161939	38162100	38162039	38162040	Frame_Shift_Del	GA	-	p.G1602fs
THCA	TCGA-DJ-A2PY-01	ARHGAP33	ENST00000587447.3,ENST00000314737.5,ENST00000588248.2,ENST00000378944.5,ENST00000593034.1,ENST00000007510.4	chr19	36275854:36276008:36276090:36276236:36276310:36276385,	36276091	36276236	36276206	36276224	Frame_Shift_Del	GGGGGCACCCGTGCCCCAC	-	p.GGTRAPP613fs
THCA	TCGA-EL-A3CO-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30699014	30699014	Frame_Shift_Del	A	-	p.E290fs
THCA	TCGA-EM-A3SU-06	SEMA4C	ENST00000305476.5,ENST00000482925.1	chr2	97530700:97530852:97530940:97531057:97531177:97531274,	97530941	97531057	97531023	97531024	Frame_Shift_Ins	-	A	p.S184fs
THYM	TCGA-5K-AAAP-01	PPFIA3	ENST00000602351.1,ENST00000334186.4	chr19	49639980:49640168:49641461:49641684:49642924:49643088,	49641462	49641684	49641538	49641539	Frame_Shift_Ins	-	A	p.D644fs
THYM	TCGA-XM-A8RC-01	TIPRL	ENST00000367833.2	chr1	168154016:168154116:168160606:168160738:168165784:168165880,	168160607	168160738	168160664	168160665	Frame_Shift_Del	AA	-	p.147_148del
THYM	TCGA-XU-A92T-01	PPP1R42	ENST00000522909.1,ENST00000324682.5	chr8	67925192:67925331:67926660:67926827:67929853:67930066,	67926661	67926827	67926672	67926673	Frame_Shift_Del	TT	-	p.95_96del
THYM	TCGA-XU-A92T-01	SHBG	ENST00000572262.1,ENST00000575314.1,ENST00000380450.4,ENST00000570527.1,ENST00000575903.1,ENST00000570353.1	chr17	7535196:7535333:7536069:7536277:7536521:7536635,	7536070	7536277	7536099	7536100	Frame_Shift_Ins	-	G	p.P294fs
THYM	TCGA-ZB-A96L-01	CYP2B6	ENST00000598834.1	chr19	41497308:41497381:41509905:41510068:41510201:41510351,	41509906	41510068	41510064	41510064	Frame_Shift_Del	A	-	p.G110fs
THYM	TCGA-ZB-A96L-01	MRPL47	ENST00000259038.2,ENST00000476781.1,ENST00000392659.2	chr3	179311552:179311683:179316462:179316559:179319517:179319572,	179316463	179316559	179316468	179316510	Frame_Shift_Del	CTAACCGCTCTGGACTTGGCATTGGCAATCTCTGCCGCTTGGC	-	p.119_133del
THYM	TCGA-XU-A92Z-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300350	21300350	Frame_Shift_Del	A	-	p.F293fs
THYM	TCGA-ZB-A966-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093111	160093111	Frame_Shift_Del	G	-	p.F95fs
THYM	TCGA-ZB-A966-01	LMBRD2	ENST00000296603.4	chr5	36117836:36118018:36122381:36122565:36122949:36123063,	36122382	36122565	36122474	36122474	Frame_Shift_Del	T	-	p.N343fs
THYM	TCGA-ZB-A966-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163580	163580	Frame_Shift_Del	C	-	p.S775fs
THYM	TCGA-ZB-A966-01	HEATR5B	ENST00000467978.1,ENST00000233099.5,ENST00000354531.2	chr2	37268275:37268435:37276795:37276986:37280644:37280750,	37276796	37276986	37276898	37276898	Frame_Shift_Del	T	-	p.N865fs
THYM	TCGA-ZB-A966-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637589	52637589	Frame_Shift_Del	T	-	p.L910fs
THYM	TCGA-ZB-A966-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492902	68492902	Frame_Shift_Del	A	-	p.L112fs
THYM	TCGA-ZB-A966-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428376	44428377	Frame_Shift_Del	AT	-	p.13_13del
THYM	TCGA-ZB-A966-01	AGPAT4	ENST00000457520.2,ENST00000366911.5,ENST00000320285.4	chr6	161557286:161557666:161560453:161560652:161567555:161567631,	161560454	161560652	161560589	161560589	Frame_Shift_Del	G	-	p.R303fs
THYM	TCGA-ZB-A966-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232795	99232795	Frame_Shift_Del	T	-	p.L176fs
THYM	TCGA-ZB-A966-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
THYM	TCGA-ZB-A966-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70805889	70805889	Frame_Shift_Del	A	-	p.R990fs
THYM	TCGA-ZB-A966-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449668	85449668	Frame_Shift_Del	A	-	p.E366fs
THYM	TCGA-ZB-A966-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17402081	17402081	Frame_Shift_Del	T	-	p.D206fs
THYM	TCGA-ZB-A966-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099958	168099958	Frame_Shift_Del	G	-	p.T685fs
THYM	TCGA-ZB-A966-01	NAPG	ENST00000582472.2,ENST00000582978.1,ENST00000322897.6	chr18	10530766:10530834:10532707:10532792:10533532:10533550,	10532708	10532792	10532719	10532719	Frame_Shift_Del	A	-	p.F45fs
THYM	TCGA-ZB-A966-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984789	36984789	Frame_Shift_Del	A	-	p.L502fs
THYM	TCGA-ZB-A966-01	WARS	ENST00000392882.2,ENST00000556645.1,ENST00000358655.4,ENST00000355338.2,ENST00000554950.1,ENST00000344102.5,ENST00000557135.1	chr14	100803398:100803539:100808734:100808908:100809611:100809724,	100808735	100808908	100808873	100808873	Frame_Shift_Del	G	-	p.R326fs
THYM	TCGA-ZB-A966-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256772	9256773	Frame_Shift_Ins	-	A	p.T1169fs
THYM	TCGA-ZB-A966-01	KIF9	ENST00000335044.2,ENST00000452770.2,ENST00000443784.1,ENST00000265529.3,ENST00000487440.1,ENST00000444589.2	chr3	47308669:47308753:47315041:47315148:47316814:47316980,47312726:47312951:47315041:47315148:47316814:47316980,	47315042	47315148	47315092	47315092	Frame_Shift_Del	C	-	p.A106fs
THYM	TCGA-ZB-A966-01	HP1BP3	ENST00000424732.1	chr1	21103212:21103243:21106304:21106404:21113687:21113765,	21106305	21106404	21106338	21106338	Frame_Shift_Del	T	-	p.S55fs
THYM	TCGA-ZB-A966-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261161	151261162	Frame_Shift_Del	TC	-	p.758_758del
THYM	TCGA-ZB-A966-01	BAZ1A	ENST00000358716.4,ENST00000382422.2,ENST00000360310.1	chr14	35295218:35295362:35331249:35331528:35343697:35343868,	35331250	35331528	35331423	35331423	Frame_Shift_Del	T	-	p.A74fs
THYM	TCGA-ZB-A966-01	CEPT1	ENST00000357172.4,ENST00000460443.1,ENST00000498239.1,ENST00000478042.1,ENST00000545121.1	chr1	111702001:111702149:111703776:111703918:111717500:111717585,	111703777	111703918	111703836	111703836	Frame_Shift_Del	T	-	p.M182fs
THYM	TCGA-ZB-A966-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410403	3410404	Frame_Shift_Ins	-	C	p.A1440fs
THYM	TCGA-ZB-A966-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.G116fs
THYM	TCGA-ZB-A966-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211543	225211543	Frame_Shift_Del	A	-	p.E445fs
THYM	TCGA-ZB-A966-01	INTS6	ENST00000469430.1,ENST00000497989.1	chr13	51963454:51963580:51969435:51969619:52004429:52004519,51963454:51963580:51969435:51969619:51995247:51995470,	51969436	51969619	51969467	51969468	Frame_Shift_Del	AG	-	p.194_195del
THYM	TCGA-ZB-A966-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214755	108214756	Frame_Shift_Del	TT	-	p.535_536del
THYM	TCGA-ZB-A966-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1144fs
THYM	TCGA-ZB-A966-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639588	47639588	Frame_Shift_Del	A	-	p.R227fs
THYM	TCGA-ZB-A966-01	FZR1	ENST00000313639.8,ENST00000395095.3,ENST00000441788.2	chr19	3531908:3532093:3532414:3532648:3533291:3533396,	3532415	3532648	3532525	3532525	Frame_Shift_Del	G	-	p.S373fs
THYM	TCGA-ZB-A96E-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	40993977:40994090:40996056:40996275:40999908:41000024,	40996057	40996275	40996178	40996178	Frame_Shift_Del	T	-	p.I186fs
THYM	TCGA-4X-A9FD-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000505312.1,ENST00000514595.1	chr5	118576113:118576166:118580053:118580271:118582689:118583060,	118580054	118580271	118580208	118580209	Frame_Shift_Del	AG	-	p.2932_2932del
THYM	TCGA-X7-A8DI-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729489	19729489	Frame_Shift_Del	A	-	p.S267fs
THYM	TCGA-3G-AB19-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3661054	3661057	Frame_Shift_Del	AGAG	-	p.201_202del
THYM	TCGA-XU-A92Q-01	MDK	ENST00000359803.3,ENST00000395566.4,ENST00000533952.1,ENST00000481047.1,ENST00000407067.1,ENST00000395565.1,ENST00000490240.1,ENST00000489525.1,ENST00000405308.2	chr11	46403242:46403308:46403843:46404011:46404136:46404286,46403606:46403683:46403843:46404011:46404136:46404147,	46403844	46404011	46403842	46403911	Frame_Shift_Del	AGATAAGGTGAAGAAGGGCGGCCCGGGGAGCGAGTGCGCTGAGTGGGCCTGGGGGCCCTGCACCCCCAGC	-	p.26_48del
THYM	TCGA-ZC-AAA7-01	GPR180	ENST00000376958.4	chr13	95264443:95264644:95271403:95271584:95271721:95271771,	95271404	95271584	95271505	95271505	Frame_Shift_Del	C	-	p.M202fs
THYM	TCGA-XU-A933-01	QRICH2	ENST00000262765.5,ENST00000524722.1	chr17	74272760:74272848:74273243:74273391:74274069:74274270,	74273244	74273391	74273351	74273351	Frame_Shift_Del	G	-	p.R1554fs
THYM	TCGA-ZB-A96V-01	HECTD4	ENST00000550722.1	chr12	112712650:112712764:112717031:112717190:112720913:112721106,	112717032	112717190	112717046	112717046	Frame_Shift_Del	A	-	p.L414fs
THYM	TCGA-3S-A8YW-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577096	7577096	Frame_Shift_Del	T	-	p.D281fs
THYM	TCGA-XM-A8RF-01	ABCD4	ENST00000554453.1	chr14	74759533:74759572:74759856:74760013:74761850:74761901,	74759857	74760013	74759934	74759935	Frame_Shift_Ins	-	GC	p.H246fs
THYM	TCGA-XM-A8RF-01	ABCD4	ENST00000553998.1	chr14	74759533:74759572:74759856:74759982:74761850:74761901,	74759857	74759982	74759934	74759935	Frame_Shift_Ins	-	GC	p.H246fs
THYM	TCGA-XM-A8RF-01	ABCD4	ENST00000481935.1,ENST00000553486.1,ENST00000356924.4,ENST00000556119.1	chr14	74759533:74759572:74759856:74759951:74761850:74761901,	74759857	74759951	74759934	74759935	Frame_Shift_Ins	-	GC	p.H246fs
THYM	TCGA-4V-A9QX-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682290	85682290	Frame_Shift_Del	C	-	p.T120fs
THYM	TCGA-XU-AAY1-01	APEH	ENST00000447541.1,ENST00000296456.5,ENST00000482301.1,ENST00000447436.1,ENST00000446089.1,ENST00000442186.1,ENST00000438011.1	chr3	49714209:49714250:49714335:49714457:49715005:49715066,	49714336	49714457	49714427	49714427	Frame_Shift_Del	C	-	p.I323fs
THYM	TCGA-4X-A9FD-01	FAM189B	ENST00000368368.3,ENST00000361361.2,ENST00000350210.2	chr1	155218195:155218264:155220066:155220612:155220885:155220955,	155220067	155220612	155220234	155220234	Frame_Shift_Del	C	-	p.G448fs
THYM	TCGA-4X-A9FD-01	FAM189B	ENST00000368366.1	chr1	155218195:155218264:155220066:155220720:155220885:155220955,	155220067	155220720	155220234	155220234	Frame_Shift_Del	C	-	p.G448fs
THYM	TCGA-4X-A9FD-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000505312.1,ENST00000514595.1	chr5	118576113:118576166:118580053:118580271:118582689:118583060,	118580054	118580271	118580208	118580209	Frame_Shift_Del	AG	-	p.KA2932fs
THYM	TCGA-XM-A8RH-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
THYM	TCGA-X7-A8M1-01	SMARCC2	ENST00000394023.3,ENST00000347471.4,ENST00000267064.4,ENST00000550164.1,ENST00000552674.1	chr12	56558431:56558515:56559101:56559483:56561843:56561978,	56559102	56559483	56559113	56559113	Frame_Shift_Del	G	-	p.P1074fs
THYM	TCGA-ZB-A966-01	MEGF6	ENST00000485002.2,ENST00000356575.4,ENST00000475790.1,ENST00000461795.1	chr1	3409291:3409331:3410334:3410463:3410559:3410609,	3410335	3410463	3410403	3410404	Frame_Shift_Ins	-	C	p.T1440fs
THYM	TCGA-ZB-A966-01	CEPT1	ENST00000357172.4,ENST00000460443.1,ENST00000498239.1,ENST00000478042.1,ENST00000545121.1	chr1	111702001:111702149:111703776:111703918:111717500:111717585,	111703777	111703918	111703836	111703836	Frame_Shift_Del	T	-	p.F184fs
THYM	TCGA-ZB-A966-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261161	151261162	Frame_Shift_Del	TC	-	p.V758fs
THYM	TCGA-ZB-A966-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093111	160093111	Frame_Shift_Del	G	-	p.G97fs
THYM	TCGA-ZB-A966-01	SUPT7L	ENST00000404798.2,ENST00000337768.5,ENST00000406540.1,ENST00000464789.2,ENST00000405491.1	chr2	27875937:27876614:27878231:27878469:27880211:27880536,	27878232	27878469	27878452	27878453	Frame_Shift_Del	AG	-	p.S254fs
THYM	TCGA-ZB-A966-01	PPM1B	ENST00000409432.3,ENST00000409895.4,ENST00000378551.2,ENST00000282412.4,ENST00000419807.1,ENST00000378540.4,ENST00000409486.2	chr2	44396088:44396413:44428324:44429184:44436348:44436466,	44428325	44429184	44428376	44428377	Frame_Shift_Del	AT	-	p.H13fs
THYM	TCGA-ZB-A966-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232795	99232795	Frame_Shift_Del	T	-	p.L193fs
THYM	TCGA-ZB-A966-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099958	168099958	Frame_Shift_Del	G	-	p.G687fs
THYM	TCGA-ZB-A966-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543930	Frame_Shift_Del	G	-	p.G799fs
THYM	TCGA-ZB-A966-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637589	52637589	Frame_Shift_Del	T	-	p.K877fs
THYM	TCGA-ZB-A966-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336954	56336954	Frame_Shift_Del	A	-	p.L123fs
THYM	TCGA-ZB-A966-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1044fs
THYM	TCGA-ZB-A966-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984789	36984789	Frame_Shift_Del	A	-	p.K504fs
THYM	TCGA-ZB-A966-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492902	68492902	Frame_Shift_Del	A	-	p.K114fs
THYM	TCGA-ZB-A966-01	PPP1R10	ENST00000376511.2	chr6	30572364:30572512:30572770:30572871:30573699:30573775,	30572771	30572871	30572795	30572795	Frame_Shift_Del	T	-	p.K310fs
THYM	TCGA-ZB-A966-01	AGPAT4	ENST00000457520.2,ENST00000366911.5,ENST00000320285.4	chr6	161557286:161557666:161560453:161560652:161567555:161567631,	161560454	161560652	161560589	161560589	Frame_Shift_Del	G	-	p.R304fs
THYM	TCGA-ZB-A966-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479358	100479358	Frame_Shift_Del	C	-	p.G110fs
THYM	TCGA-ZB-A966-01	INTS9	ENST00000523303.1,ENST00000416984.2,ENST00000522363.1,ENST00000397363.4,ENST00000521022.1,ENST00000522074.1,ENST00000521777.1	chr8	28638467:28638511:28645345:28645406:28651323:28651504,	28645346	28645406	28645389	28645392	Frame_Shift_Del	TGTT	-	p.KQ330fs
THYM	TCGA-ZB-A966-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562695	32562696	Frame_Shift_Ins	-	A	p.EK940fs
THYM	TCGA-ZB-A966-01	EML1	ENST00000327921.9,ENST00000262233.6,ENST00000554479.1,ENST00000334192.4,ENST00000554553.1	chr14	100364569:100364639:100367265:100367376:100373974:100374070,	100367266	100367376	100367334	100367334	Frame_Shift_Del	T	-	p.G322fs
THYM	TCGA-ZB-A966-01	SLC25A47	ENST00000557052.1,ENST00000361529.3	chr14	100793524:100793707:100795062:100795381:100795701:100796473,	100795063	100795381	100795092	100795093	Frame_Shift_Ins	-	A	p.S120fs
THYM	TCGA-ZB-A966-01	WARS	ENST00000392882.2,ENST00000556645.1,ENST00000358655.4,ENST00000355338.2,ENST00000554950.1,ENST00000344102.5,ENST00000557135.1	chr14	100803398:100803539:100808734:100808908:100809611:100809724,	100808735	100808908	100808873	100808873	Frame_Shift_Del	G	-	p.P325fs
THYM	TCGA-ZB-A966-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P865fs
THYM	TCGA-ZB-A966-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256772	9256773	Frame_Shift_Ins	-	A	p.TK1146fs
THYM	TCGA-ZB-A966-01	NAPG	ENST00000582472.2,ENST00000582978.1,ENST00000322897.6	chr18	10530766:10530834:10532707:10532792:10533532:10533550,	10532708	10532792	10532719	10532719	Frame_Shift_Del	A	-	p.K46fs
THYM	TCGA-ZB-A966-01	SBNO2	ENST00000587024.1,ENST00000438103.2,ENST00000361757.3,ENST00000587673.1	chr19	1110743:1110887:1111017:1111092:1111504:1111613,	1111018	1111092	1111067	1111068	Frame_Shift_Del	CA	-	p.V945fs
THYM	TCGA-ZB-A966-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.K115fs
THYM	TCGA-ZB-A966-01	SAMD4B	ENST00000598913.1,ENST00000314471.6,ENST00000596368.1	chr19	39847455:39847729:39860294:39860765:39866289:39866320,	39860295	39860765	39860622	39860622	Frame_Shift_Del	G	-	p.W175fs
THYM	TCGA-ZB-A966-01	SLC9A8	ENST00000417961.1	chr20	48466115:48466217:48467298:48467381:48471974:48472118,	48467299	48467381	48467301	48467301	Frame_Shift_Del	T	-	p.G179fs
THYM	TCGA-ZB-A966-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939823	137939823	Frame_Shift_Del	G	-	p.P23fs
THYM	TCGA-ZB-A962-01	MIDN	ENST00000300952.2,ENST00000591446.2	chr19	1251837:1251900:1254165:1254477:1254900:1255060,	1254166	1254477	1254384	1254384	Frame_Shift_Del	C	-	p.V201fs
THYM	TCGA-ZB-A962-01	G6PD	ENST00000393562.2,ENST00000393564.2,ENST00000369620.2	chrX	153760781:153761017:153761156:153761343:153761790:153761884,	153761157	153761343	153761291	153761291	Frame_Shift_Del	C	-	p.G336fs
THYM	TCGA-XM-AAZ3-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.M75fs
THYM	TCGA-ZB-A964-01	SPDEF	ENST00000544425.1	chr6	34508760:34508958:34511796:34512261:34523705:34523843,	34511797	34512261	34512194	34512194	Frame_Shift_Del	G	-	p.P13fs
THYM	TCGA-ZB-A964-01	PER1	ENST00000317276.4	chr17	8045966:8046153:8046583:8047194:8048068:8048165,	8046584	8047194	8047049	8047049	Frame_Shift_Del	G	-	p.P869fs
THYM	TCGA-XM-A8R8-01	WNT5A	ENST00000474267.1,ENST00000264634.4,ENST00000497027.1	chr3	55504020:55504578:55508364:55508657:55513341:55513592,	55508365	55508657	55508612	55508612	Frame_Shift_Del	A	-	p.V147fs
THYM	TCGA-XM-A8R8-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114069792	114069792	Frame_Shift_Del	C	-	p.G305fs
THYM	TCGA-ZC-AAAH-01	NFATC1	ENST00000542384.1,ENST00000587635.1,ENST00000427363.2,ENST00000591814.1	chr18	77160330:77160479:77170402:77171501:77193578:77193738,77156224:77156351:77170402:77171501:77193578:77193738,	77170403	77171501	77171335	77171335	Frame_Shift_Del	G	-	p.G354fs
THYM	TCGA-ZB-A96M-01	CCDC30	ENST00000509712.1,ENST00000477155.1	chr1	43000559:43000660:43002146:43002272:43011080:43011250,	43002147	43002272	43002200	43002201	Frame_Shift_Del	AG	-	p.KE15fs
THYM	TCGA-ZB-A96M-01	NACA	ENST00000454682.1	chr12	57108418:57108471:57109654:57115243:57118235:57118305,	57109655	57115243	57111315	57111315	Frame_Shift_Del	G	-	p.P1333fs
THYM	TCGA-3G-AB0O-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816503	203816504	Frame_Shift_Ins	-	A	p.K412fs
THYM	TCGA-4V-A9QT-01	NCOA7	ENST00000368357.3,ENST00000392477.2,ENST00000419660.1,ENST00000417494.1	chr6	126136436:126136550:126176165:126176386:126196034:126196114,	126176166	126176386	126176316	126176317	Frame_Shift_Ins	-	A	p.EK67fs
THYM	TCGA-X7-A8DB-01	EPS8L1	ENST00000589362.1,ENST00000540810.1,ENST00000592102.1,ENST00000588359.1,ENST00000201647.6,ENST00000245618.5	chr19	55597764:55597886:55598081:55598256:55598670:55598803,	55598082	55598256	55598164	55598164	Frame_Shift_Del	C	-	p.V620fs
THYM	TCGA-3S-A8YW-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27878369	27878370	Frame_Shift_Ins	-	G	p.P86fs
THYM	TCGA-ZL-A9V6-01	AAR2	ENST00000320849.4	chr20	34824386:34824425:34827742:34828547:34832618:34832848,	34827743	34828547	34828531	34828531	Frame_Shift_Del	C	-	p.S247fs
THYM	TCGA-YT-A95H-01	DGKZ	ENST00000529660.1	chr11	46400006:46400050:46400443:46400661:46400752:46400786,	46400444	46400661	46400561	46400562	Frame_Shift_Ins	-	G	p.AG1001fs
THYM	TCGA-YT-A95H-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000543978.1,ENST00000524984.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000527911.1	chr11	46400006:46400050:46400540:46400661:46400752:46400786,	46400541	46400661	46400561	46400562	Frame_Shift_Ins	-	G	p.AG1001fs
THYM	TCGA-YT-A95H-01	FCAR	ENST00000391725.3,ENST00000345937.4,ENST00000355524.3,ENST00000469767.1	chr19	55385745:55385779:55386785:55386821:55396646:55396937,	55386786	55386821	55386792	55386793	Frame_Shift_Ins	-	C	p.S14fs
THYM	TCGA-XU-A932-01	DUSP23	ENST00000368108.3	chr1	159750749:159750783:159750888:159751157:159751942:159752333,	159750889	159751157	159750903	159750903	Frame_Shift_Del	C	-	p.P6fs
THYM	TCGA-XU-A932-01	STRN4	ENST00000595357.1,ENST00000435164.2,ENST00000391910.3	chr19	47228737:47228905:47230708:47230824:47231150:47231216,	47230709	47230824	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
THYM	TCGA-XU-A932-01	STRN4	ENST00000601631.2,ENST00000263280.6,ENST00000539396.1,ENST00000594357.2	chr19	47228737:47228905:47230708:47230803:47231150:47231216,	47230709	47230803	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
THYM	TCGA-XU-A932-01	STRN4	ENST00000600358.3,ENST00000602223.1	chr19	47228737:47228905:47230708:47230948:47231150:47231216,	47230709	47230948	47230756	47230756	Frame_Shift_Del	C	-	p.D408fs
THYM	TCGA-ZB-A965-01	HES2	ENST00000377837.1,ENST00000377836.4	chr1	6473109:6473342:6479666:6479762:6479835:6479903,	6479667	6479762	6479724	6479725	Frame_Shift_Del	GC	-	p.R28fs
THYM	TCGA-ZB-A965-01	RFX2	ENST00000359161.3,ENST00000592546.1,ENST00000589742.1,ENST00000303657.5	chr19	6007785:6007813:6008116:6008235:6010146:6010262,	6008117	6008235	6008208	6008208	Frame_Shift_Del	G	-	p.P348fs
THYM	TCGA-XU-A92V-01	SIM2	ENST00000481185.1,ENST00000290399.6,ENST00000430056.3	chr21	38071990:38072221:38081467:38081550:38084832:38084922,	38081468	38081550	38081506	38081506	Frame_Shift_Del	C	-	p.P72fs
THYM	TCGA-X7-A8M7-01	RBM42	ENST00000262633.4,ENST00000589871.1,ENST00000360475.4,ENST00000589559.1,ENST00000592202.1,ENST00000588161.1	chr19	36124002:36124154:36124588:36124921:36125157:36125275,	36124589	36124921	36124722	36124722	Frame_Shift_Del	C	-	p.A273fs
THYM	TCGA-X7-A8M7-01	CARD10	ENST00000403299.1	chr22	37913977:37914115:37914972:37915224:37915349:37915549,	37914973	37915224	37915183	37915183	Frame_Shift_Del	C	-	p.E9fs
THYM	TCGA-XU-AAXZ-01	MON1A	ENST00000417270.1,ENST00000296473.3	chr3	49946685:49946833:49947551:49948317:49950652:49950792,49946685:49946833:49947551:49948317:49948958:49949444,	49947552	49948317	49947776	49947776	Frame_Shift_Del	T	-	p.L393fs
THYM	TCGA-XU-A931-01	MEPE	ENST00000511670.1,ENST00000540395.1	chr4	88759783:88759837:88761078:88761206:88766128:88766392,	88761079	88761206	88761201	88761201	Frame_Shift_Del	C	-	p.D77fs
THYM	TCGA-ZB-A96E-01	SCRIB	ENST00000320476.3,ENST00000377533.3,ENST00000356994.2	chr8	144887124:144887184:144887281:144887605:144888576:144888654,	144887282	144887605	144887583	144887583	Frame_Shift_Del	C	-	p.G790fs
THYM	TCGA-X7-A8D6-01	NDUFS1	ENST00000449699.1,ENST00000440274.1,ENST00000432169.1,ENST00000457011.1,ENST00000455934.2,ENST00000233190.6,ENST00000423725.1	chr2	206997668:206997829:207003208:207003338:207006664:207006793,	207003209	207003338	207003254	207003254	Frame_Shift_Del	G	-	p.P449fs
THYM	TCGA-ZC-AAAA-01	USP42	ENST00000306177.5,ENST00000521713.1,ENST00000479544.2	chr7	6190042:6190137:6193386:6194826:6196384:6196686,	6193387	6194826	6194487	6194487	Frame_Shift_Del	G	-	p.R1101fs
THYM	TCGA-YT-A95G-01	SREBF1	ENST00000395751.4,ENST00000395756.1,ENST00000395757.1,ENST00000261646.5,ENST00000355815.4	chr17	17716025:17716165:17716681:17716793:17716882:17717036,	17716682	17716793	17716695	17716695	Frame_Shift_Del	G	-	p.P1097fs
THYM	TCGA-YT-A95G-01	PLEKHJ1	ENST00000586608.2	chr19	2233996:2234060:2235760:2235989:2236153:2236262,	2235761	2235989	2235841	2235841	Frame_Shift_Del	G	-	p.P81fs
THYM	TCGA-YT-A95G-01	PLEKHJ1	ENST00000588450.1	chr19	2233996:2234060:2234148:2235989:2236153:2236262,	2234149	2235989	2235841	2235841	Frame_Shift_Del	G	-	p.P81fs
THYM	TCGA-XU-AAY0-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42074969	42074970	Frame_Shift_Ins	-	G	p.P227fs
THYM	TCGA-X7-A8DC-01	WDR90	ENST00000549091.1,ENST00000552728.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1	chr16	710611:710714:711050:711172:711341:711501,	711051	711172	711108	711108	Frame_Shift_Del	C	-	p.A1150fs
THYM	TCGA-3G-AB19-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3661054	3661057	Frame_Shift_Del	AGAG	-	p.SL201fs
THYM	TCGA-X7-A8D9-01	CAMKK2	ENST00000412367.2,ENST00000404169.3,ENST00000402834.4	chr12	121708700:121708748:121711858:121712388:121735341:121735860,121708700:121708748:121711858:121712388:121734440:121734489,	121711859	121712388	121711906	121711906	Frame_Shift_Del	G	-	p.R143fs
THYM	TCGA-X7-A8D9-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276860	15276861	Frame_Shift_Ins	-	C	p.S1802fs
THYM	TCGA-4V-A9QR-01	PRPF3	ENST00000496202.1,ENST00000543398.1,ENST00000324862.6,ENST00000467329.1	chr1	150300778:150300925:150305154:150305238:150305449:150305670,	150305155	150305238	150305190	150305197	Frame_Shift_Del	CGAGGAGA	-	p.IEER153fs
THYM	TCGA-XM-AAZ1-01	TFAP2B	ENST00000393655.3	chr6	50786438:50786685:50791119:50791578:50796331:50796392,	50791120	50791578	50791518	50791518	Frame_Shift_Del	G	-	p.A169fs
THYM	TCGA-X7-A8D8-01	CAMK1G	ENST00000361322.2,ENST00000009105.1	chr1	209784809:209784897:209785136:209785561:209786129:209786257,	209785137	209785561	209785503	209785503	Frame_Shift_Del	A	-	p.K428fs
THYM	TCGA-X7-A8D8-01	PRRT1	ENST00000375150.2,ENST00000375152.2	chr6	32117313:32117499:32118144:32118360:32119585:32119676,	32118145	32118360	32118218	32118218	Frame_Shift_Del	C	-	p.G162fs
THYM	TCGA-X7-A8D8-01	PRRT1	ENST00000211413.5	chr6	32117313:32117499:32118144:32118683:32119585:32119676,	32118145	32118683	32118218	32118218	Frame_Shift_Del	C	-	p.G162fs
THYM	TCGA-ZB-A96K-01	INPP5K	ENST00000573790.1,ENST00000449479.1	chr17	1413008:1413093:1417165:1417273:1419749:1419876,	1417166	1417273	1417231	1417232	Frame_Shift_Ins	-	G	p.P29fs
THYM	TCGA-XH-A853-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100376267:100376403:100377960:100378073:100379082:100379294,	100377961	100378073	100378028	100378028	Frame_Shift_Del	A	-	p.K1303fs
THYM	TCGA-XU-A92Z-01	ZNF714	ENST00000600435.1	chr19	21281620:21281716:21299612:21301688:21307763:21307897,	21299613	21301688	21300350	21300350	Frame_Shift_Del	A	-	p.N294fs
THYM	TCGA-XM-A8RE-01	SH3TC1	ENST00000502669.1,ENST00000539824.1,ENST00000515682.1,ENST00000245105.3,ENST00000506360.1	chr4	8226907:8226943:8228706:8230371:8233702:8233883,	8228707	8230371	8230291	8230291	Frame_Shift_Del	C	-	p.T881fs
THYM	TCGA-XM-A8RE-01	ITGB7	ENST00000422257.3,ENST00000267082.5	chr12	53586113:53586322:53586474:53586694:53586923:53587147,	53586475	53586694	53586690	53586690	Frame_Shift_Del	A	-	p.F577fs
THYM	TCGA-X7-A8DI-01	ULK2	ENST00000361658.2,ENST00000395544.4,ENST00000571177.1	chr17	19728406:19728495:19729451:19729499:19741813:19741817,	19729452	19729499	19729489	19729489	Frame_Shift_Del	A	-	p.F266fs
THYM	TCGA-5K-AAAP-01	PPFIA3	ENST00000602351.1,ENST00000334186.4	chr19	49639980:49640168:49641461:49641684:49642924:49643088,	49641462	49641684	49641538	49641539	Frame_Shift_Ins	-	A	p.L644fs
THYM	TCGA-4V-A9QU-01	L3MBTL4	ENST00000284898.6,ENST00000400104.3,ENST00000400105.2,ENST00000535782.1,ENST00000317931.7	chr18	6171826:6171941:6213147:6213258:6215748:6215834,	6213148	6213258	6213244	6213245	Frame_Shift_Ins	-	C	p.V295fs
THYM	TCGA-XM-A8RF-01	DOK2	ENST00000544659.1,ENST00000517422.1	chr8	21769411:21769499:21769739:21770021:21771049:21771174,21768183:21768368:21769739:21770021:21771049:21771174,	21769740	21770021	21769850	21769850	Frame_Shift_Del	G	-	p.R79fs
THYM	TCGA-XU-A92O-01	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785730	28785730	Frame_Shift_Del	A	-	p.K53fs
THYM	TCGA-XU-A92O-01	ZSWIM8	ENST00000603409.1,ENST00000604754.1,ENST00000603114.1,ENST00000398706.2,ENST00000412198.1,ENST00000492395.1,ENST00000604524.1,ENST00000433366.2,ENST00000605216.1,ENST00000604729.1	chr10	75560053:75560230:75560397:75560517:75560774:75560924,	75560398	75560517	75560464	75560464	Frame_Shift_Del	C	-	p.S1690fs
THYM	TCGA-XU-A92O-01	SCAF1	ENST00000360565.3	chr19	50157605:50157688:50157908:50158127:50161017:50161146,	50157909	50158127	50158113	50158114	Frame_Shift_Del	GG	-	p.G1202fs
THYM	TCGA-ZB-A96Q-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
THYM	TCGA-XU-A92Q-01	SLAMF1	ENST00000302035.6	chr1	160582277:160582370:160589565:160589639:160604402:160604682,160582277:160582370:160589565:160589639:160593885:160593975,	160589566	160589639	160589600	160589601	Frame_Shift_Ins	-	T	p.P277fs
THYM	TCGA-XM-A8RC-01	TIPRL	ENST00000367833.2	chr1	168154016:168154116:168160606:168160738:168165784:168165880,	168160607	168160738	168160664	168160665	Frame_Shift_Del	AA	-	p.K148fs
THYM	TCGA-XM-A8RC-01	MAGI1	ENST00000483466.1,ENST00000468159.1,ENST00000460329.2,ENST00000463103.2,ENST00000330909.8	chr3	65369206:65369298:65372817:65372901:65376816:65377033,	65372818	65372901	65372850	65372851	Frame_Shift_Del	TC	-	p.E823fs
THYM	TCGA-XM-A8RC-01	LDHC	ENST00000544105.1,ENST00000280704.4,ENST00000541669.1,ENST00000535809.1	chr11	18434264:18434390:18451283:18451457:18456286:18456460,18436730:18436848:18451283:18451457:18456286:18456460,	18451284	18451457	18451288	18451288	Frame_Shift_Del	C	-	p.Y83fs
THYM	TCGA-X7-A8DD-01	MPST	ENST00000397129.1,ENST00000429360.2	chr22	37415838:37415913:37420232:37420851:37425256:37425835,	37420233	37420851	37420514	37420514	Frame_Shift_Del	A	-	p.A86fs
THYM	TCGA-ZC-AAA7-01	IRF1	ENST00000437654.1,ENST00000463784.1,ENST00000458069.1,ENST00000439555.2,ENST00000459982.1,ENST00000405885.2,ENST00000245414.4	chr5	131822355:131822378:131822486:131822536:131822645:131822822,	131822487	131822536	131822507	131822508	Frame_Shift_Ins	-	A	p.E132fs
THYM	TCGA-ZC-AAA7-01	GPR180	ENST00000376958.4	chr13	95264443:95264644:95271403:95271584:95271721:95271771,	95271404	95271584	95271505	95271505	Frame_Shift_Del	C	-	p.H203fs
THYM	TCGA-XU-A92W-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91406039	91406040	Frame_Shift_Ins	-	T	p.K291fs
THYM	TCGA-XU-A92R-01	LPAR3	ENST00000370611.3	chr1	85279598:85279854:85331067:85331821:85358698:85358896,	85331068	85331821	85331664	85331665	Frame_Shift_Ins	-	A	p.*47fs
THYM	TCGA-ZB-A969-01	PDE4B	ENST00000329654.4,ENST00000371049.3,ENST00000341517.4	chr1	66378997:66379039:66384279:66384518:66713142:66713227,	66384280	66384518	66384467	66384468	Frame_Shift_Ins	-	AA	p.P77fs
THYM	TCGA-ZB-A96L-01	MRPL47	ENST00000259038.2,ENST00000476781.1,ENST00000392659.2	chr3	179311552:179311683:179316462:179316559:179319517:179319572,	179316463	179316559	179316468	179316510	Frame_Shift_Del	CTAACCGCTCTGGACTTGGCATTGGCAATCTCTGCCGCTTGGC	-	p.AKRQRLPMPSPERLD119fs
THYM	TCGA-XU-A92X-01	NCOR2	ENST00000429285.2,ENST00000397355.1,ENST00000404121.2,ENST00000404621.1	chr12	124848224:124848345:124856567:124857156:124862782:124862930,	124856568	124857156	124856668	124856668	Frame_Shift_Del	C	-	p.A903fs
THYM	TCGA-X7-A8DJ-01	NHSL2	ENST00000540800.1	chrX	71353999:71354068:71354358:71354554:71358290:71360621,71353999:71354068:71354358:71354554:71356943:71357075,	71354359	71354554	71354453	71354453	Frame_Shift_Del	A	-	p.Q220fs
THYM	TCGA-4X-A9F9-01	GSE1	ENST00000393243.1,ENST00000253458.7,ENST00000405402.2,ENST00000412692.1	chr16	85690882:85691210:85694751:85695371:85696586:85696699,	85694752	85695371	85695251	85695251	Frame_Shift_Del	C	-	p.P715fs
THYM	TCGA-XU-A92T-01	DLEC1	ENST00000452631.2,ENST00000308059.6,ENST00000478428.1,ENST00000346219.3	chr3	38159296:38159515:38161938:38162100:38163118:38163272,	38161939	38162100	38162039	38162040	Frame_Shift_Del	GA	-	p.G1602fs
THYM	TCGA-XU-A92T-01	PPP1R42	ENST00000522909.1,ENST00000324682.5	chr8	67925192:67925331:67926660:67926827:67929853:67930066,	67926661	67926827	67926672	67926673	Frame_Shift_Del	TT	-	p.K95fs
THYM	TCGA-5U-AB0D-01	UGDH	ENST00000515021.1,ENST00000316423.6,ENST00000509391.1,ENST00000506179.1,ENST00000514106.1	chr4	39512434:39512481:39515702:39515804:39522970:39523095,	39515703	39515804	39515752	39515753	Frame_Shift_Ins	-	A	p.Y72fs
THYM	TCGA-5U-AB0D-01	UGDH	ENST00000503779.1,ENST00000510881.1	chr4	39512434:39512481:39515702:39515800:39522970:39523095,	39515703	39515800	39515752	39515753	Frame_Shift_Ins	-	A	p.Y72fs
THYM	TCGA-5U-AB0D-01	PPP4R1	ENST00000285124.8,ENST00000400556.3,ENST00000400555.3,ENST00000584754.1	chr18	9550366:9550396:9553319:9553420:9557218:9557380,	9553320	9553420	9553368	9553368	Frame_Shift_Del	A	-	p.L748fs
THYM	TCGA-ZB-A96A-01	PI4KA	ENST00000477245.1,ENST00000572273.1,ENST00000399213.2,ENST00000414196.3,ENST00000255882.6	chr22	21063583:21063667:21064195:21064285:21064986:21065146,	21064196	21064285	21064210	21064213	Frame_Shift_Del	TGTC	-	p.QT2052fs
THYM	TCGA-XM-A8RG-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305693	27305693	Frame_Shift_Del	G	-	p.L418fs
THYM	TCGA-XM-A8RG-01	SEMA4G	ENST00000521006.1	chr10	102740924:102740986:102743061:102744114:102744246:102744547,	102743062	102744114	102743633	102743633	Frame_Shift_Del	C	-	p.L759fs
THYM	TCGA-XM-A8RG-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.P782fs
THYM	TCGA-XU-A92Y-01	CPAMD8	ENST00000593420.1,ENST00000443236.1	chr19	17068662:17068725:17081700:17081843:17085896:17086068,17068662:17068725:17081700:17081843:17085906:17086068,	17081701	17081843	17081703	17081703	Frame_Shift_Del	G	-	p.P784fs
THYM	TCGA-XU-A933-01	KLHL29	ENST00000486442.1,ENST00000471654.1	chr2	23918820:23919003:23919202:23919383:23926055:23926249,	23919203	23919383	23919269	23919270	Frame_Shift_Ins	-	CCTCGTCT	p.-664fs
THYM	TCGA-XU-A933-01	CTNND2	ENST00000359640.2,ENST00000511377.1,ENST00000304623.8	chr5	11364968:11365002:11384776:11385341:11397142:11397315,	11384777	11385341	11385097	11385112	Frame_Shift_Del	GCCGAGCCGCCGCGCT	-	p.QRGGSA281fs
THYM	TCGA-XU-A933-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143096021	143096021	Frame_Shift_Del	G	-	p.R337fs
THYM	TCGA-XU-A933-01	APLP2	ENST00000543137.1,ENST00000338167.5,ENST00000278756.7,ENST00000528499.1,ENST00000345598.5	chr11	130003523:130003623:130005457:130005610:130010292:130010342,	130005458	130005610	130005582	130005582	Frame_Shift_Del	C	-	p.H603fs
THYM	TCGA-XU-A933-01	QRICH2	ENST00000262765.5,ENST00000524722.1	chr17	74272760:74272848:74273243:74273391:74274069:74274270,	74273244	74273391	74273351	74273351	Frame_Shift_Del	G	-	p.R1555fs
THYM	TCGA-ZB-A964-01	EXTL3	ENST00000220562.4	chr8	28570973:28571067:28573101:28575724:28588739:28588867,	28573102	28575724	28574610	28574611	Frame_Shift_Ins	-	C	p.Q346fs
THYM	TCGA-YT-A95H-01	FCAR	ENST00000391725.3,ENST00000345937.4,ENST00000355524.3,ENST00000469767.1	chr19	55385745:55385779:55386785:55386821:55396646:55396937,	55386786	55386821	55386792	55386793	Frame_Shift_Ins	-	C	p.L15fs
THYM	TCGA-ZB-A96L-01	CYP2B6	ENST00000598834.1	chr19	41497308:41497381:41509905:41510068:41510201:41510351,	41509906	41510068	41510064	41510064	Frame_Shift_Del	A	-	p.Y111fs
THYM	TCGA-ZC-AAA7-01	IRF1	ENST00000437654.1,ENST00000463784.1,ENST00000458069.1,ENST00000439555.2,ENST00000459982.1,ENST00000405885.2,ENST00000245414.4	chr5	131822355:131822378:131822486:131822536:131822645:131822822,	131822487	131822536	131822507	131822508	Frame_Shift_Ins	-	A	p.K131fs
THYM	TCGA-4X-A9FD-01	DMXL1	ENST00000311085.8,ENST00000539542.1,ENST00000505312.1,ENST00000514595.1	chr5	118576113:118576166:118580053:118580271:118582689:118583060,	118580054	118580271	118580208	118580209	Frame_Shift_Del	AG	-	p.K2953fs
THYM	TCGA-ZB-A966-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961586	135961589	Frame_Shift_Del	TGTT	-	p.M1fs
THYM	TCGA-ZB-A966-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
THYM	TCGA-ZB-A966-01	CEPT1	ENST00000357172.4,ENST00000460443.1,ENST00000498239.1,ENST00000478042.1,ENST00000545121.1	chr1	111702001:111702149:111703776:111703918:111717500:111717585,	111703777	111703918	111703836	111703836	Frame_Shift_Del	T	-	p.C185fs
THYM	TCGA-ZB-A966-01	ZNF687	ENST00000336715.6,ENST00000426871.1,ENST00000324048.5,ENST00000368879.2,ENST00000459919.1	chr1	151260666:151260882:151261003:151261182:151261570:151261747,	151261004	151261182	151261161	151261162	Frame_Shift_Del	TC	-	p.R760fs
THYM	TCGA-ZB-A966-01	SHC1	ENST00000368445.5,ENST00000368453.4,ENST00000448116.2,ENST00000414115.1,ENST00000368450.1,ENST00000606391.1,ENST00000368449.4	chr1	154938637:154938707:154938794:154938993:154940146:154940273,	154938795	154938993	154938890	154938890	Frame_Shift_Del	C	-	p.V363fs
THYM	TCGA-ZB-A966-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694023	156694023	Frame_Shift_Del	G	-	p.L289fs
THYM	TCGA-ZB-A966-01	ATP1A2	ENST00000392233.3,ENST00000361216.3,ENST00000472488.1	chr1	160090981:160091041:160093002:160093206:160093732:160093846,	160093003	160093206	160093111	160093111	Frame_Shift_Del	G	-	p.F98fs
THYM	TCGA-ZB-A966-01	DNAH14	ENST00000430092.1,ENST00000445597.2,ENST00000439375.2	chr1	225195114:225195246:225211316:225211567:225226395:225226525,	225211317	225211567	225211543	225211543	Frame_Shift_Del	A	-	p.K447fs
THYM	TCGA-ZB-A966-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47637232:47637511:47639552:47639699:47641407:47641557,	47639553	47639699	47639588	47639588	Frame_Shift_Del	A	-	p.A230fs
THYM	TCGA-ZB-A966-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232795	99232795	Frame_Shift_Del	T	-	p.F195fs
THYM	TCGA-ZB-A966-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168099958	168099958	Frame_Shift_Del	G	-	p.D688fs
THYM	TCGA-ZB-A966-01	FSIP2	ENST00000343098.5,ENST00000424728.1	chr2	186659344:186662253:186664423:186673860:186678271:186678769,	186664424	186673860	186665038	186665039	Frame_Shift_Ins	-	A	p.N3760fs
THYM	TCGA-ZB-A966-01	TMBIM1	ENST00000492966.1,ENST00000466012.1,ENST00000445635.1,ENST00000465082.1,ENST00000258412.3,ENST00000476429.1,ENST00000396809.2,ENST00000429501.1,ENST00000495113.1,ENST00000444881.1,ENST00000418569.1,ENST00000425694.1	chr2	219143258:219143288:219143760:219143814:219144748:219144804,219143258:219143288:219143760:219143814:219144011:219144076,	219143761	219143814	219143774	219143777	Frame_Shift_Del	AGAC	-	p.V136fs
THYM	TCGA-ZB-A966-01	STAB1	ENST00000321725.6	chr3	52543225:52543337:52543885:52544072:52544157:52544251,	52543886	52544072	52543930	52543930	Frame_Shift_Del	G	-	p.V800fs
THYM	TCGA-ZB-A966-01	PBRM1	ENST00000446103.1,ENST00000423351.1	chr3	52623085:52623271:52637536:52637748:52643328:52643477,52623085:52623268:52637536:52637748:52643328:52643971,	52637537	52637748	52637589	52637589	Frame_Shift_Del	T	-	p.K909fs
THYM	TCGA-ZB-A966-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319247	54319248	Frame_Shift_Ins	-	AG	p.E486fs
THYM	TCGA-ZB-A966-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319247	54319248	Frame_Shift_Ins	-	AG	p.E486fs
THYM	TCGA-ZB-A966-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539580	76539580	Frame_Shift_Del	T	-	p.K74fs
THYM	TCGA-ZB-A966-01	PLEKHG4B	ENST00000283426.6	chr5	161897:162059:162836:163663:169454:169707,	162837	163663	163580	163580	Frame_Shift_Del	C	-	p.P777fs
THYM	TCGA-ZB-A966-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984789	36984789	Frame_Shift_Del	A	-	p.R505fs
THYM	TCGA-ZB-A966-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492902	68492902	Frame_Shift_Del	A	-	p.N115fs
THYM	TCGA-ZB-A966-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70805889	70805889	Frame_Shift_Del	A	-	p.I992fs
THYM	TCGA-ZB-A966-01	SEC63	ENST00000369002.4	chr6	108204191:108204350:108214685:108214859:108215041:108215101,	108214686	108214859	108214755	108214756	Frame_Shift_Del	TT	-	p.K535fs
THYM	TCGA-ZB-A966-01	TOMM7	ENST00000372879.4	chr7	22852785:22852804:22857030:22857167:22857618:22857667,	22857031	22857167	22857031	22857032	Frame_Shift_Del	TT	-	p.K96fs
THYM	TCGA-ZB-A966-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479358	100479358	Frame_Shift_Del	C	-	p.P112fs
THYM	TCGA-ZB-A966-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17402081	17402081	Frame_Shift_Del	T	-	p.F208fs
THYM	TCGA-ZB-A966-01	INTS9	ENST00000523303.1,ENST00000416984.2,ENST00000522363.1,ENST00000397363.4,ENST00000521022.1,ENST00000522074.1,ENST00000521777.1	chr8	28638467:28638511:28645345:28645406:28651323:28651504,	28645346	28645406	28645389	28645392	Frame_Shift_Del	TGTT	-	p.K351fs
THYM	TCGA-ZB-A966-01	XPNPEP1	ENST00000369658.1,ENST00000488118.2,ENST00000502935.1,ENST00000369680.4,ENST00000322238.8,ENST00000369683.1	chr10	111629710:111629787:111630488:111630662:111631549:111631619,	111630489	111630662	111630571	111630572	Frame_Shift_Ins	-	A	p.L538fs
THYM	TCGA-ZB-A966-01	NRXN2	ENST00000265459.6,ENST00000377551.1,ENST00000442300.1,ENST00000409571.1,ENST00000417749.1	chr11	64453117:64453419:64457876:64457948:64465246:64465264,64453117:64453419:64457876:64457948:64460318:64460348,	64457877	64457948	64457919	64457919	Frame_Shift_Del	C	-	p.A270fs
THYM	TCGA-ZB-A966-01	MUC19	ENST00000454784.4,ENST00000425730.2	chr12	40839320:40839446:40840289:40840431:40841126:40841158,	40840290	40840431	40840397	40840397	Frame_Shift_Del	G	-	p.G1032fs
THYM	TCGA-ZB-A966-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85449668	85449668	Frame_Shift_Del	A	-	p.K368fs
THYM	TCGA-ZB-A966-01	INTS6	ENST00000469430.1,ENST00000497989.1	chr13	51963454:51963580:51969435:51969619:52004429:52004519,51963454:51963580:51969435:51969619:51995247:51995470,	51969436	51969619	51969467	51969468	Frame_Shift_Del	AG	-	p.S194fs
THYM	TCGA-ZB-A966-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562695	32562696	Frame_Shift_Ins	-	A	p.N942fs
THYM	TCGA-ZB-A966-01	SLC25A47	ENST00000557052.1,ENST00000361529.3	chr14	100793524:100793707:100795062:100795381:100795701:100796473,	100795063	100795381	100795092	100795093	Frame_Shift_Ins	-	A	p.V120fs
THYM	TCGA-ZB-A966-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256772	9256773	Frame_Shift_Ins	-	A	p.N1170fs
THYM	TCGA-ZB-A966-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107037	49107038	Frame_Shift_Ins	-	G	p.Q297fs
THYM	TCGA-ZB-A969-01	PDE4B	ENST00000329654.4,ENST00000371049.3,ENST00000341517.4	chr1	66378997:66379039:66384279:66384518:66713142:66713227,	66384280	66384518	66384467	66384468	Frame_Shift_Ins	-	AA	p.P78fs
THYM	TCGA-ZB-A969-01	DTX3L	ENST00000296161.4	chr3	122284705:122284917:122287335:122288871:122289301:122289382,	122287336	122288871	122288784	122288791	Frame_Shift_Del	TTTCACTG	-	p.T618fs
THYM	TCGA-ZB-A969-01	ACSS1	ENST00000542618.1,ENST00000432802.2,ENST00000537502.1,ENST00000323482.4	chr20	25003611:25003728:25004101:25004277:25011394:25011594,	25004102	25004277	25004221	25004231	Frame_Shift_Del	CCACCACGCGC	-	p.R227fs
THYM	TCGA-XU-A933-01	KLHL29	ENST00000486442.1,ENST00000471654.1	chr2	23918820:23919003:23919202:23919383:23926055:23926249,	23919203	23919383	23919269	23919270	Frame_Shift_Ins	-	CCTCGTCT	p.S668fs
THYM	TCGA-5K-AAAP-01	MTCH1	ENST00000538808.1,ENST00000373616.5,ENST00000460219.1,ENST00000373627.5	chr6	36944974:36945026:36945409:36945467:36945853:36945931,	36945410	36945467	36945416	36945416	Frame_Shift_Del	G	-	p.L215fs
THYM	TCGA-YT-A95H-01	DGKZ	ENST00000529660.1	chr11	46400006:46400050:46400443:46400661:46400752:46400786,	46400444	46400661	46400561	46400562	Frame_Shift_Ins	-	G	p.D1003fs
THYM	TCGA-YT-A95H-01	DGKZ	ENST00000456247.2,ENST00000395574.3,ENST00000543978.1,ENST00000524984.1,ENST00000343674.6,ENST00000421244.2,ENST00000454345.1,ENST00000532868.2,ENST00000528615.1,ENST00000318201.8,ENST00000527911.1	chr11	46400006:46400050:46400540:46400661:46400752:46400786,	46400541	46400661	46400561	46400562	Frame_Shift_Ins	-	G	p.D1003fs
THYM	TCGA-3S-A8YW-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27878369	27878370	Frame_Shift_Ins	-	G	p.R87fs
THYM	TCGA-ZB-A962-01	PPP6R2	ENST00000216061.5	chr22	50878389:50878478:50879229:50879455:50882294:50882546,	50879230	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.P854fs
THYM	TCGA-ZB-A962-01	PPP6R2	ENST00000395744.3,ENST00000395741.3,ENST00000359139.3,ENST00000401672.3,ENST00000427222.2	chr22	50878389:50878478:50879250:50879455:50882294:50882546,	50879251	50879455	50879410	50879410	Frame_Shift_Del	C	-	p.P854fs
THYM	TCGA-XU-AAY0-01	C6orf132	ENST00000341865.4	chr6	42068855:42071616:42072200:42075321:42077953:42078029,	42072201	42075321	42074969	42074970	Frame_Shift_Ins	-	G	p.P228fs
THYM	TCGA-X7-A8DB-01	EPS8L1	ENST00000589362.1,ENST00000540810.1,ENST00000592102.1,ENST00000588359.1,ENST00000201647.6,ENST00000245618.5	chr19	55597764:55597886:55598081:55598256:55598670:55598803,	55598082	55598256	55598164	55598164	Frame_Shift_Del	C	-	p.P621fs
THYM	TCGA-3G-AB0O-01	TMEM63B	ENST00000371893.2,ENST00000323267.6,ENST00000533121.1,ENST00000259746.9	chr6	44118300:44118366:44119582:44119745:44120329:44120435,	44119583	44119745	44119717	44119718	Frame_Shift_Del	CG	-	p.S603fs
THYM	TCGA-XU-A933-01	CTNND2	ENST00000359640.2,ENST00000511377.1,ENST00000304623.8	chr5	11364968:11365002:11384776:11385341:11397142:11397315,	11384777	11385341	11385097	11385112	Frame_Shift_Del	GCCGAGCCGCCGCGCT	-	p.Q281fs
UCEC	TCGA-A5-A0G5-01	B4GALT3	ENST00000319769.5,ENST00000493164.1	chr1	161144841:161145018:161145597:161145864:161146223:161146298,	161145598	161145864	161145761	161145762	Frame_Shift_Ins	-	C	p.G30fs
UCEC	TCGA-A5-A0G5-01	B4GALT3	ENST00000367998.1,ENST00000496313.1,ENST00000487004.1	chr1	161144841:161145018:161145597:161145885:161146223:161146298,	161145598	161145885	161145761	161145762	Frame_Shift_Ins	-	C	p.G30fs
UCEC	TCGA-A5-A0G5-01	FAM78B	ENST00000441649.1	chr1	166029137:166029900:166038748:166040000:166135222:166135462,	166038749	166040000	166039571	166039572	Frame_Shift_Ins	-	G	p.P231fs
UCEC	TCGA-A5-A0G5-01	FAM78B	ENST00000456900.1	chr1	166029137:166029900:166039071:166040000:166135222:166135462,	166039072	166040000	166039571	166039572	Frame_Shift_Ins	-	G	p.P231fs
UCEC	TCGA-A5-A0G5-01	IGFN1	ENST00000437879.2,ENST00000295591.8,ENST00000473483.1,ENST00000335211.4,ENST00000412892.1	chr1	201194951:201195251:201196009:201196336:201197513:201197776,	201196010	201196336	201196197	201196201	Frame_Shift_Del	CGCGG	-	p.P3658fs
UCEC	TCGA-A5-A0G5-01	RPL32	ENST00000396957.1,ENST00000435983.1,ENST00000429711.2,ENST00000396953.2,ENST00000457131.1	chr3	12877600:12877722:12880847:12881029:12881640:12881741,	12880848	12881029	12880929	12880930	Frame_Shift_Ins	-	T	p.T66fs
UCEC	TCGA-A5-A0G5-01	RPL32	ENST00000273223.6	chr3	12877600:12877722:12880847:12881083:12881640:12881741,	12880848	12881083	12880929	12880930	Frame_Shift_Ins	-	T	p.T66fs
UCEC	TCGA-A5-A0G5-01	CAMK2D	ENST00000505990.1,ENST00000394522.3,ENST00000394526.2,ENST00000379773.2,ENST00000514328.1,ENST00000515496.1,ENST00000342666.5,ENST00000454265.2,ENST00000508738.1,ENST00000429180.1,ENST00000296402.5,ENST00000511664.1,ENST00000418639.2	chr4	114582868:114582928:114680475:114680570:114682159:114682224,	114680476	114680570	114680565	114680566	Frame_Shift_Ins	-	C	p.A24fs
UCEC	TCGA-A5-A0G5-01	HLA-A	ENST00000376809.5,ENST00000376806.5,ENST00000376802.2,ENST00000396634.1	chr6	29910645:29910803:29911044:29911320:29911898:29911945,	29911045	29911320	29911319	29911319	Frame_Shift_Del	G	-	p.D207_splice
UCEC	TCGA-A5-A0G5-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022425	11022426	Frame_Shift_Ins	-	A	p.P180fs
UCEC	TCGA-A5-A0G5-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877096	16877096	Frame_Shift_Del	C	-	p.A3427fs
UCEC	TCGA-A5-A0G5-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.P314fs
UCEC	TCGA-A5-A0G5-01	PPFIA1	ENST00000527612.1,ENST00000528750.1,ENST00000526262.1,ENST00000389547.3,ENST00000532504.1,ENST00000253925.7,ENST00000530390.1	chr11	70201744:70201917:70202266:70202360:70208200:70208281,	70202267	70202360	70202321	70202322	Frame_Shift_Ins	-	G	p.L848fs
UCEC	TCGA-A5-A0G5-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232949	19232950	Frame_Shift_Ins	-	A	p.S467fs
UCEC	TCGA-A5-A0G5-01	ABCC3	ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48745795:48745878:48746213:48746280:48746500:48746627,	48746214	48746280	48746263	48746264	Frame_Shift_Ins	-	C	p.L640fs
UCEC	TCGA-A5-A0G5-01	NPC1	ENST00000540608.1,ENST00000269228.5	chr18	21137080:21137154:21140194:21140444:21141323:21141491,	21140195	21140444	21140211	21140212	Frame_Shift_Ins	-	A	p.F288fs
UCEC	TCGA-A5-A0G5-01	CRKL	ENST00000411769.1	chr22	21271721:21272533:21288066:21288532:21303998:21304215,	21288067	21288532	21288216	21288217	Frame_Shift_Ins	-	GAAGCCT	p.E154fs
UCEC	TCGA-A5-A0G9-01	SNX7	ENST00000306121.3,ENST00000529992.1	chr1	99164261:99164461:99167372:99167459:99225609:99226054,99164261:99164461:99167372:99167459:99203792:99203945,	99167373	99167459	99167381	99167382	Frame_Shift_Ins	-	A	p.M349fs
UCEC	TCGA-A5-A0G9-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091465	204091466	Frame_Shift_Ins	-	C	p.R321fs
UCEC	TCGA-A5-A0G9-01	ZNF638	ENST00000409544.1,ENST00000264447.4,ENST00000409407.1,ENST00000487638.1	chr2	71645731:71645769:71649943:71651168:71651779:71651845,	71649944	71651168	71650549	71650549	Frame_Shift_Del	A	-	p.E1302fs
UCEC	TCGA-A5-A0G9-01	CNTN4	ENST00000422330.1,ENST00000418658.1,ENST00000455083.1,ENST00000397461.1,ENST00000427741.1	chr3	2380861:2380917:2613099:2613242:2777898:2778007,	2613100	2613242	2613227	2613228	Frame_Shift_Ins	-	T	p.I14fs
UCEC	TCGA-A5-A0G9-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612759	13612760	Frame_Shift_Ins	-	G	p.R302fs
UCEC	TCGA-A5-A0G9-01	ANO10	ENST00000414522.2,ENST00000451430.2,ENST00000396091.3,ENST00000292246.3	chr3	43616300:43616356:43618183:43618753:43621844:43621964,	43618184	43618753	43618493	43618493	Frame_Shift_Del	G	-	p.R285fs
UCEC	TCGA-A5-A0G9-01	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000478733.1,ENST00000431670.2,ENST00000412622.1	chr3	111659381:111659492:111664114:111664204:111672776:111672876,111659381:111659492:111664114:111664204:111667778:111667922,	111664115	111664204	111664163	111664163	Frame_Shift_Del	G	-	p.G816fs
UCEC	TCGA-A5-A0G9-01	CTNNA1	ENST00000540387.1,ENST00000518825.1,ENST00000355078.5,ENST00000521724.1,ENST00000302763.7	chr5	138240087:138240130:138253430:138253587:138260198:138260235,	138253431	138253587	138253516	138253516	Frame_Shift_Del	A	-	p.E492fs
UCEC	TCGA-A5-A0G9-01	POLR1C	ENST00000488601.2,ENST00000372389.3,ENST00000304004.3	chr6	43487803:43487923:43488012:43488165:43488669:43488786,43487806:43487923:43488012:43488165:43488362:43488441,	43488013	43488165	43488037	43488038	Frame_Shift_Ins	-	C	p.I176fs
UCEC	TCGA-A5-A0G9-01	KIAA1324L	ENST00000394714.2,ENST00000297222.6,ENST00000444627.1,ENST00000450689.2,ENST00000416314.1	chr7	86509392:86509846:86521039:86521205:86522237:86522251,	86521040	86521205	86521160	86521161	Frame_Shift_Del	TT	-	p.K970fs
UCEC	TCGA-A5-A0G9-01	CASD1	ENST00000297273.4	chr7	94174856:94175013:94176407:94176487:94178844:94178946,	94176408	94176487	94176469	94176469	Frame_Shift_Del	T	-	p.C565fs
UCEC	TCGA-A5-A0G9-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-A5-A0G9-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-A5-A0G9-01	AKNA	ENST00000223791.3,ENST00000374079.4,ENST00000374075.5,ENST00000374088.3,ENST00000492875.1,ENST00000307564.4	chr9	117098444:117099586:117103812:117104005:117104288:117104405,	117103813	117104005	117103910	117103911	Frame_Shift_Ins	-	G	p.P1323fs
UCEC	TCGA-A5-A0G9-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832773	24832773	Frame_Shift_Del	C	-	p.S1525fs
UCEC	TCGA-A5-A0G9-01	CTNNA3	ENST00000330298.6,ENST00000545309.1,ENST00000433211.2,ENST00000373744.4	chr10	69299260:69299427:69366614:69366807:69407172:69407271,	69366615	69366807	69366760	69366760	Frame_Shift_Del	T	-	p.K49fs
UCEC	TCGA-A5-A0G9-01	FRA10AC1	ENST00000359204.4,ENST00000536233.1,ENST00000371430.2,ENST00000394100.2	chr10	95436409:95436448:95441236:95441355:95443812:95443855,	95441237	95441355	95441330	95441330	Frame_Shift_Del	T	-	p.R232fs
UCEC	TCGA-A5-A0G9-01	ALDH18A1	ENST00000483788.1,ENST00000371221.3,ENST00000371224.2	chr10	97397043:97397193:97402748:97402963:97413046:97413162,	97402749	97402963	97402882	97402883	Frame_Shift_Del	TG	-	p.H57fs
UCEC	TCGA-A5-A0G9-01	INPPL1	ENST00000298229.2,ENST00000538751.1,ENST00000541756.1,ENST00000537755.1	chr11	71942185:71942233:71942541:71942659:71943283:71943380,	71942542	71942659	71942633	71942634	Frame_Shift_Ins	-	G	p.V530fs
UCEC	TCGA-A5-A0G9-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299657	107299657	Frame_Shift_Del	T	-	p.K434fs
UCEC	TCGA-A5-A0G9-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320926	46320926	Frame_Shift_Del	T	-	p.K853fs
UCEC	TCGA-A5-A0G9-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921002	57921002	Frame_Shift_Del	C	-	p.P692fs
UCEC	TCGA-A5-A0G9-01	TTLL5	ENST00000554510.1,ENST00000298832.9,ENST00000557636.1,ENST00000556893.1	chr14	76286349:76286504:76330009:76330205:76349027:76349245,	76330010	76330205	76330103	76330103	Frame_Shift_Del	C	-	p.H1155fs
UCEC	TCGA-A5-A0G9-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64966525	64966525	Frame_Shift_Del	C	-	p.S491fs
UCEC	TCGA-A5-A0G9-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967390	64967390	Frame_Shift_Del	C	-	p.D779fs
UCEC	TCGA-A5-A0G9-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.R1893fs
UCEC	TCGA-A5-A0G9-01	CNDP2	ENST00000579847.1,ENST00000324262.4,ENST00000324301.8	chr18	72185733:72185875:72186183:72186331:72187233:72188356,	72186184	72186331	72186284	72186284	Frame_Shift_Del	G	-	p.V437fs
UCEC	TCGA-A5-A0G9-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3,ENST00000461423.1	chr20	37146426:37146643:37150139:37150341:37153420:37153480,	37150140	37150341	37150290	37150290	Frame_Shift_Del	T	-	p.I523fs
UCEC	TCGA-A5-A0G9-01	DDX17	ENST00000216019.7,ENST00000403230.1,ENST00000381633.3	chr22	38895404:38895504:38897134:38897285:38901955:38902299,	38897135	38897285	38897211	38897211	Frame_Shift_Del	T	-	p.K121fs
UCEC	TCGA-A5-A0GA-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088788	27088788	Frame_Shift_Del	G	-	p.Q799fs
UCEC	TCGA-A5-A0GA-01	CDC7	ENST00000234626.6	chr1	91966449:91966505:91967210:91967388:91973410:91973494,	91967211	91967388	91967357	91967357	Frame_Shift_Del	A	-	p.L28fs
UCEC	TCGA-A5-A0GA-01	SLC44A3	ENST00000475883.1,ENST00000271227.6,ENST00000529450.1,ENST00000446120.2,ENST00000467909.1,ENST00000527077.1,ENST00000532427.1	chr1	95356685:95356823:95357836:95358073:95360373:95360561,	95357837	95358073	95357932	95357932	Frame_Shift_Del	T	-	p.A572fs
UCEC	TCGA-A5-A0GA-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155385534:155385714:155408117:155408859:155429587:155429689,	155408118	155408859	155408443	155408444	Frame_Shift_Ins	-	T	p.K1834fs
UCEC	TCGA-A5-A0GA-01	NEK7	ENST00000367385.4,ENST00000538004.1,ENST00000391974.3	chr1	198201682:198201767:198222169:198222310:198231704:198231753,	198222170	198222310	198222297	198222298	Frame_Shift_Ins	-	A	p.L62fs
UCEC	TCGA-A5-A0GA-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.P864fs
UCEC	TCGA-A5-A0GA-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212517	185212518	Frame_Shift_Ins	-	A	p.F156fs
UCEC	TCGA-A5-A0GA-01	JAKMIP1	ENST00000409021.3,ENST00000409371.3	chr4	6043885:6043954:6050583:6050649:6051545:6051599,	6050584	6050649	6050598	6050599	Frame_Shift_Ins	-	A	p.L671fs
UCEC	TCGA-A5-A0GA-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Del	GA	-	p.R889fs
UCEC	TCGA-A5-A0GA-01	NOTCH4	ENST00000375023.3	chr6	32168607:32168783:32168893:32169277:32169852:32169923,	32168894	32169277	32169116	32169116	Frame_Shift_Del	G	-	p.P1306fs
UCEC	TCGA-A5-A0GA-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74345104:74345223:74346343:74346430:74348134:74348222,	74346344	74346430	74346345	74346345	Frame_Shift_Del	A	-	p.G234_splice
UCEC	TCGA-A5-A0GA-01	CLVS2	ENST00000368438.1,ENST00000275162.5	chr6	123369766:123369877:123376950:123377171:123384818:123385612,	123376951	123377171	123376953	123376954	Frame_Shift_Ins	-	T	p.I226fs
UCEC	TCGA-A5-A0GA-01	ASB15	ENST00000447789.1,ENST00000540573.1,ENST00000451558.1,ENST00000434204.1,ENST00000275699.3,ENST00000451215.1	chr7	123256417:123256549:123257632:123257791:123264622:123264868,	123257633	123257791	123257756	123257757	Frame_Shift_Ins	-	A	p.T139fs
UCEC	TCGA-A5-A0GA-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395131	33395132	Frame_Shift_Ins	-	CATCTTCCTC	p.Q30fs
UCEC	TCGA-A5-A0GA-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.L29fs
UCEC	TCGA-A5-A0GA-01	AUH	ENST00000375731.4,ENST00000303617.5	chr9	93976241:93976707:93979558:93979609:93983086:93983201,93978340:93978388:93979558:93979609:93983086:93983201,	93979559	93979609	93979581	93979581	Frame_Shift_Del	A	-	p.L291fs
UCEC	TCGA-A5-A0GA-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831289	61831290	Frame_Shift_Ins	-	T	p.I3117fs
UCEC	TCGA-A5-A0GA-01	BTBD16	ENST00000368994.2,ENST00000260723.4	chr10	124058518:124058649:124066703:124066823:124088994:124089086,	124066704	124066823	124066813	124066813	Frame_Shift_Del	T	-	p.F301fs
UCEC	TCGA-A5-A0GA-01	TEAD1	ENST00000526600.1,ENST00000361905.4,ENST00000361985.2,ENST00000527636.1	chr11	12904547:12904672:12923486:12923660:12946458:12946599,	12923487	12923660	12923632	12923632	Frame_Shift_Del	A	-	p.Q282fs
UCEC	TCGA-A5-A0GA-01	NRXN2	ENST00000423049.1,ENST00000487484.1,ENST00000301894.2	chr11	64397957:64398045:64402742:64402924:64410010:64410072,	64402743	64402924	64402894	64402894	Frame_Shift_Del	C	-	p.G1145fs
UCEC	TCGA-A5-A0GA-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.P732fs
UCEC	TCGA-A5-A0GA-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2	chr12	112305375:112305473:112306556:112306665:112308074:112308111,	112306557	112306665	112306591	112306591	Frame_Shift_Del	G	-	p.G107fs
UCEC	TCGA-A5-A0GA-01	HTR2A	ENST00000542664.1	chr13	47466524:47466725:47469629:47470369:47470808:47471169,	47469630	47470369	47469817	47469818	Frame_Shift_Ins	-	T	p.N75fs
UCEC	TCGA-A5-A0GA-01	AK7	ENST00000267584.4	chr14	96887158:96887269:96904171:96904252:96909066:96909155,	96904172	96904252	96904244	96904244	Frame_Shift_Del	T	-	p.F228fs
UCEC	TCGA-A5-A0GA-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310486	33310486	Frame_Shift_Del	A	-	p.T154fs
UCEC	TCGA-A5-A0GA-01	LIG3	ENST00000592690.1	chr17	33307595:33307641:33310250:33310571:33313006:33313150,	33310251	33310571	33310486	33310486	Frame_Shift_Del	A	-	p.T154fs
UCEC	TCGA-A5-A0GA-01	PRR11	ENST00000581182.1,ENST00000578542.1,ENST00000580177.1	chr17	57233117:57233166:57247108:57247241:57262414:57262565,	57247109	57247241	57247171	57247171	Frame_Shift_Del	A	-	p.K20fs
UCEC	TCGA-A5-A0GA-01	ZNF532	ENST00000591083.1,ENST00000589288.1,ENST00000591808.1,ENST00000591230.1,ENST00000336078.4	chr18	56532785:56532811:56585502:56587865:56601664:56601810,	56585503	56587865	56585962	56585963	Frame_Shift_Ins	-	C	p.D148fs
UCEC	TCGA-A5-A0GA-01	LCA5L	ENST00000288350.3,ENST00000358268.2,ENST00000380671.2	chr21	40792631:40792769:40794901:40795416:40800097:40800429,	40794902	40795416	40795272	40795272	Frame_Shift_Del	T	-	p.N156fs
UCEC	TCGA-A5-A0GB-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-A5-A0GB-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
UCEC	TCGA-A5-A0GB-01	JAK1	ENST00000342505.4	chr1	65334993:65335157:65339052:65339206:65344707:65344746,	65339053	65339206	65339129	65339129	Frame_Shift_Del	T	-	p.N136fs
UCEC	TCGA-A5-A0GB-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482150	150482151	Frame_Shift_Ins	-	C	p.A45fs
UCEC	TCGA-A5-A0GB-01	ECM1	ENST00000369049.4	chr1	150482006:150482057:150482136:150482232:150482310:150482478,	150482137	150482232	150482150	150482151	Frame_Shift_Ins	-	C	p.A45fs
UCEC	TCGA-A5-A0GB-01	ECM1	ENST00000346569.6,ENST00000369047.4	chr1	150482006:150482057:150482136:150482238:150482397:150482478,	150482137	150482238	150482150	150482151	Frame_Shift_Ins	-	C	p.A45fs
UCEC	TCGA-A5-A0GB-01	DYNC1I2	ENST00000409773.1,ENST00000445378.1,ENST00000409453.1,ENST00000456808.1,ENST00000358002.6,ENST00000409317.1,ENST00000411953.1,ENST00000409197.1	chr2	172544010:172544137:172546656:172546773:172549286:172549404,172544301:172544383:172546656:172546773:172549286:172549404,	172546657	172546773	172546762	172546762	Frame_Shift_Del	A	-	p.K33fs
UCEC	TCGA-A5-A0GB-01	HGD	ENST00000492108.1	chr3	120347212:120347376:120351993:120352175:120357301:120357428,120347212:120347376:120351993:120352175:120360435:120360540,	120351994	120352175	120352095	120352096	Frame_Shift_Ins	-	C	p.G362fs
UCEC	TCGA-A5-A0GB-01	SEL1L3	ENST00000399878.3,ENST00000264868.5,ENST00000502949.1	chr4	25792076:25792196:25803904:25804084:25806162:25806374,	25803905	25804084	25803988	25803988	Frame_Shift_Del	G	-	p.L625fs
UCEC	TCGA-A5-A0GB-01	HERC5	ENST00000508159.1,ENST00000510223.1,ENST00000264350.3,ENST00000502913.1	chr4	89400503:89400658:89407265:89407379:89408219:89408330,	89407266	89407379	89407334	89407334	Frame_Shift_Del	T	-	p.N602fs
UCEC	TCGA-A5-A0GB-01	FRG1	ENST00000524583.1	chr4	190876191:190876306:190878552:190878657:190881902:190881994,190873316:190873442:190878552:190878657:190881902:190881994,	190878553	190878657	190878555	190878556	Frame_Shift_Ins	-	A	p.G145fs
UCEC	TCGA-A5-A0GB-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123982583	123982583	Frame_Shift_Del	T	-	p.N1165fs
UCEC	TCGA-A5-A0GB-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171789738:171789873:171800793:171800819:171809039:171809131,	171800794	171800819	171800802	171800802	Frame_Shift_Del	T	-	p.K140fs
UCEC	TCGA-A5-A0GB-01	USP45	ENST00000500704.2,ENST00000496518.2,ENST00000392738.2,ENST00000507717.1,ENST00000329966.6,ENST00000327681.6,ENST00000369233.2,ENST00000472914.2,ENST00000506871.1	chr6	99936075:99936171:99936556:99936696:99951640:99951649,	99936557	99936696	99936572	99936572	Frame_Shift_Del	A	-	p.F201fs
UCEC	TCGA-A5-A0GB-01	MEPCE	ENST00000414441.1	chr7	100026439:100026663:100028237:100029312:100030541:100030760,	100028238	100029312	100028576	100028576	Frame_Shift_Del	C	-	p.A312fs
UCEC	TCGA-A5-A0GB-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559070	149559070	Frame_Shift_Del	C	-	p.P941fs
UCEC	TCGA-A5-A0GB-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041561	86041562	Frame_Shift_Ins	-	A	p.E525fs
UCEC	TCGA-A5-A0GB-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	399145:399259:404917:405073:406929:407069,	404918	405073	405015	405015	Frame_Shift_Del	T	-	p.L1111fs
UCEC	TCGA-A5-A0GB-01	RAB14	ENST00000373840.4,ENST00000451303.1	chr9	123943776:123943851:123945207:123945238:123945588:123945676,	123945208	123945238	123945209	123945209	Frame_Shift_Del	T	-	p.T157_splice
UCEC	TCGA-A5-A0GB-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.G1862fs
UCEC	TCGA-A5-A0GB-01	DNAJC12	ENST00000483798.2,ENST00000225171.2	chr10	69556839:69556968:69565340:69565545:69571281:69571421,	69565341	69565545	69565516	69565516	Frame_Shift_Del	T	-	p.K109fs
UCEC	TCGA-A5-A0GB-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660967	3660967	Frame_Shift_Del	A	-	p.L231fs
UCEC	TCGA-A5-A0GB-01	CDC42BPG	ENST00000342711.5	chr11	64600391:64600431:64600702:64600808:64601071:64601131,	64600703	64600808	64600783	64600784	Frame_Shift_Ins	-	G	p.R884fs
UCEC	TCGA-A5-A0GB-01	NUMA1	ENST00000393695.3,ENST00000540843.1,ENST00000351960.6,ENST00000537905.1,ENST00000537217.1,ENST00000535087.1,ENST00000366394.3	chr11	71740250:71740336:71746947:71747021:71752004:71752132,71740250:71740336:71746947:71747021:71780887:71780957,	71746948	71747021	71746964	71746965	Frame_Shift_Ins	-	C	p.A9fs
UCEC	TCGA-A5-A0GB-01	RPUSD4	ENST00000298317.4,ENST00000533628.1,ENST00000530903.1,ENST00000526942.1	chr11	126073216:126073552:126074125:126074223:126075362:126075434,	126074126	126074223	126074127	126074128	Frame_Shift_Ins	-	G	p.Q298_splice
UCEC	TCGA-A5-A0GB-01	TNFRSF1A	ENST00000543995.1,ENST00000540022.1,ENST00000162749.2,ENST00000543359.1,ENST00000534885.1,ENST00000536717.1	chr12	6438630:6438788:6438943:6439232:6439432:6439461,	6438944	6439232	6439158	6439158	Frame_Shift_Del	G	-	p.P281fs
UCEC	TCGA-A5-A0GB-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641029	96641029	Frame_Shift_Del	C	-	p.S173fs
UCEC	TCGA-A5-A0GB-01	CCDC62	ENST00000392440.2,ENST00000537566.1,ENST00000253079.6	chr12	123297816:123297966:123307912:123308006:123310968:123311164,	123307913	123308006	123307941	123307941	Frame_Shift_Del	A	-	p.Q677fs
UCEC	TCGA-A5-A0GB-01	PAN3	ENST00000282391.5	chr13	28813769:28813833:28830428:28830676:28834583:28834688,	28830429	28830676	28830663	28830664	Frame_Shift_Ins	-	T	p.P412fs
UCEC	TCGA-A5-A0GB-01	EML5	ENST00000380664.5,ENST00000554922.1	chr14	89153559:89153671:89154614:89154817:89160650:89160751,	89154615	89154817	89154769	89154769	Frame_Shift_Del	T	-	p.N863fs
UCEC	TCGA-A5-A0GB-01	TRPM1	ENST00000560658.1,ENST00000559177.1,ENST00000558445.1,ENST00000256552.6,ENST00000542188.1,ENST00000397795.2	chr15	31360081:31360295:31362233:31362429:31369107:31369187,	31362234	31362429	31362390	31362391	Frame_Shift_Ins	-	G	p.P58fs
UCEC	TCGA-A5-A0GB-01	DMXL2	ENST00000560421.1,ENST00000543779.2,ENST00000449909.3,ENST00000251076.5	chr15	51856321:51856457:51857284:51857363:51860683:51860755,	51857285	51857363	51857323	51857323	Frame_Shift_Del	A	-	p.L109fs
UCEC	TCGA-A5-A0GB-01	ZNF263	ENST00000219069.5	chr16	3333954:3334205:3335058:3335239:3335680:3335754,	3335059	3335239	3335217	3335217	Frame_Shift_Del	C	-	p.D182fs
UCEC	TCGA-A5-A0GB-01	RPGRIP1L	ENST00000564374.1,ENST00000379925.3,ENST00000262135.4,ENST00000563746.1	chr16	53675196:53675387:53679536:53679915:53682875:53683027,	53679537	53679915	53679759	53679760	Frame_Shift_Ins	-	A	p.F820fs
UCEC	TCGA-A5-A0GB-01	ACLY	ENST00000352035.2,ENST00000393896.2,ENST00000353196.1,ENST00000590151.1	chr17	40060981:40061043:40061774:40061911:40062780:40062899,	40061775	40061911	40061845	40061845	Frame_Shift_Del	G	-	p.P311fs
UCEC	TCGA-A5-A0GB-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
UCEC	TCGA-A5-A0GB-01	GGN	ENST00000334928.6	chr19	38874992:38875169:38876060:38877920:38878400:38878462,	38876061	38877920	38877093	38877093	Frame_Shift_Del	C	-	p.G270fs
UCEC	TCGA-A5-A0GB-01	GGN	ENST00000585737.1	chr19	38876060:38876140:38876286:38877654:38878400:38878462,	38876287	38877654	38877093	38877093	Frame_Shift_Del	C	-	p.G270fs
UCEC	TCGA-A5-A0GB-01	IGFL2	ENST00000593592.1,ENST00000377693.4,ENST00000600243.1,ENST00000434646.2	chr19	46663671:46663725:46663870:46664138:46664326:46664545,	46663871	46664138	46663998	46663999	Frame_Shift_Ins	-	C	p.G78fs
UCEC	TCGA-A5-A0GB-01	FERMT1	ENST00000217289.4,ENST00000536936.1	chr20	6068455:6068530:6069611:6069736:6075585:6075632,	6069612	6069736	6069715	6069715	Frame_Shift_Del	T	-	p.K387fs
UCEC	TCGA-A5-A0GB-01	SH3KBP1	ENST00000379726.3,ENST00000397821.3,ENST00000379716.1,ENST00000541422.1,ENST00000379698.4	chrX	19555834:19555898:19560042:19560311:19564039:19564168,	19560043	19560311	19560215	19560215	Frame_Shift_Del	G	-	p.L574fs
UCEC	TCGA-A5-A0GB-01	SLC35A2	ENST00000247138.5	chrX	48760537:48760742:48762022:48762759:48763668:48763820,	48762023	48762759	48762390	48762391	Frame_Shift_Ins	-	A	p.F293fs
UCEC	TCGA-A5-A0GB-01	KDM5C	ENST00000375383.3	chrX	53247496:53247580:53250020:53250098:53253921:53254358,53246977:53247148:53250020:53250098:53253921:53254604,	53250021	53250098	53250047	53250047	Frame_Shift_Del	G	-	p.R68fs
UCEC	TCGA-A5-A0GB-01	PDZD4	ENST00000544474.1,ENST00000164640.4,ENST00000393758.2,ENST00000484792.1	chrX	153070333:153070355:153070551:153070662:153070959:153071061,	153070552	153070662	153070562	153070562	Frame_Shift_Del	G	-	p.P257fs
UCEC	TCGA-A5-A0GD-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087913	109087914	Frame_Shift_Ins	-	T	p.V710fs
UCEC	TCGA-A5-A0GD-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415681	86415682	Frame_Shift_Ins	-	C	p.V191fs
UCEC	TCGA-A5-A0GE-01	RBM47	ENST00000510871.1	chr4	40434725:40434879:40438457:40438902:40439787:40440814,	40438458	40438902	40438541	40438541	Frame_Shift_Del	C	-	p.G416fs
UCEC	TCGA-A5-A0GE-01	RBM47	ENST00000381793.2,ENST00000295971.7,ENST00000514014.1	chr4	40434725:40434879:40438457:40438664:40439787:40440814,	40438458	40438664	40438541	40438541	Frame_Shift_Del	C	-	p.G416fs
UCEC	TCGA-A5-A0GE-01	FLYWCH1	ENST00000399667.2,ENST00000570752.1,ENST00000574985.1,ENST00000573564.1,ENST00000253928.9,ENST00000416288.2,ENST00000344592.5	chr16	2987121:2987385:2988184:2988457:2990032:2990093,	2988185	2988457	2988221	2988222	Frame_Shift_Ins	-	G	p.L605fs
UCEC	TCGA-A5-A0GH-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42046807	42046807	Frame_Shift_Del	G	-	p.P1221fs
UCEC	TCGA-A5-A0GH-01	IFI44L	ENST00000370751.5	chr1	79086153:79086256:79093590:79094078:79094635:79094684,	79093591	79094078	79093915	79093915	Frame_Shift_Del	A	-	p.P105fs
UCEC	TCGA-A5-A0GH-01	ARID4B	ENST00000474953.1,ENST00000366603.2,ENST00000349213.3,ENST00000421364.1,ENST00000264183.3	chr1	235331858:235331967:235335932:235336079:235338498:235338714,	235335933	235336079	235335991	235335991	Frame_Shift_Del	T	-	p.K1251fs
UCEC	TCGA-A5-A0GH-01	CNOT10	ENST00000454516.2,ENST00000331889.6,ENST00000328834.5,ENST00000416457.1	chr3	32806173:32806301:32811378:32811454:32814948:32815004,	32811379	32811454	32811409	32811409	Frame_Shift_Del	C	-	p.P739fs
UCEC	TCGA-A5-A0GH-01	HSPA4	ENST00000304858.2	chr5	132431789:132431942:132432852:132432978:132435236:132435344,	132432853	132432978	132432907	132432907	Frame_Shift_Del	G	-	p.A620fs
UCEC	TCGA-A5-A0GH-01	DNAJC18	ENST00000302060.5	chr5	138749875:138749961:138755741:138755914:138758396:138758506,	138755742	138755914	138755844	138755845	Frame_Shift_Ins	-	A	p.F283fs
UCEC	TCGA-A5-A0GH-01	HNRNPH1	ENST00000521116.1	chr5	179048371:179048398:179050037:179050165:179061065:179061158,	179050038	179050165	179050040	179050041	Frame_Shift_Ins	-	A	p.S32fs
UCEC	TCGA-A5-A0GH-01	ARID1B	ENST00000414678.2	chr6	157431605:157431695:157454161:157454341:157469757:157470085,157405899:157406039:157454161:157454341:157469757:157470085,	157454162	157454341	157454251	157454251	Frame_Shift_Del	G	-	p.G808fs
UCEC	TCGA-A5-A0GH-01	ARID1B	ENST00000452544.1	chr6	157431605:157431695:157454173:157454341:157469757:157470085,	157454174	157454341	157454251	157454251	Frame_Shift_Del	G	-	p.G808fs
UCEC	TCGA-A5-A0GH-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161469829	161469829	Frame_Shift_Del	A	-	p.P175fs
UCEC	TCGA-A5-A0GH-01	DTX2	ENST00000446600.1	chr7	76092970:76093026:76111824:76112464:76121469:76121570,	76111825	76112464	76112249	76112249	Frame_Shift_Del	A	-	p.P140fs
UCEC	TCGA-A5-A0GH-01	HOOK3	ENST00000526882.1,ENST00000307602.4	chr8	42852732:42852780:42857249:42857284:42862989:42863072,	42857250	42857284	42857260	42857261	Frame_Shift_Ins	-	A	p.L544fs
UCEC	TCGA-A5-A0GH-01	BRD3	ENST00000473349.1	chr9	136899822:136899951:136901153:136901446:136906881:136906916,	136901154	136901446	136901171	136901171	Frame_Shift_Del	T	-	p.K640fs
UCEC	TCGA-A5-A0GH-01	FRA10AC1	ENST00000359204.4,ENST00000536233.1,ENST00000371430.2,ENST00000394100.2	chr10	95436409:95436448:95441236:95441355:95443812:95443855,	95441237	95441355	95441329	95441330	Frame_Shift_Ins	-	T	p.R232fs
UCEC	TCGA-A5-A0GH-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1017721	1017721	Frame_Shift_Del	G	-	p.L1694fs
UCEC	TCGA-A5-A0GH-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
UCEC	TCGA-A5-A0GH-01	ZDHHC13	ENST00000446113.2	chr11	19138730:19138823:19164524:19164670:19167727:19167850,	19164525	19164670	19164648	19164649	Frame_Shift_Del	TG	-	p.C51fs
UCEC	TCGA-A5-A0GH-01	GUCY2C	ENST00000261170.3	chr12	14825806:14825892:14827558:14827694:14829787:14829905,	14827559	14827694	14827563	14827563	Frame_Shift_Del	A	-	p.F360fs
UCEC	TCGA-A5-A0GH-01	GAS6	ENST00000357389.3,ENST00000355761.4,ENST00000327773.6	chr13	114541041:114541164:114542700:114542823:114549499:114549562,	114542701	114542823	114542718	114542718	Frame_Shift_Del	C	-	p.G150fs
UCEC	TCGA-A5-A0GH-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562675	32562675	Frame_Shift_Del	T	-	p.F934fs
UCEC	TCGA-A5-A0GH-01	POLE2	ENST00000554396.1,ENST00000539565.2,ENST00000556584.1,ENST00000216367.5	chr14	50121722:50121812:50122388:50122561:50130032:50130105,	50122389	50122561	50122533	50122534	Frame_Shift_Ins	-	A	p.F261fs
UCEC	TCGA-A5-A0GH-01	DDX24	ENST00000330836.5	chr14	94528820:94528967:94545370:94546093:94547464:94547492,	94545371	94546093	94545561	94545561	Frame_Shift_Del	T	-	p.K176fs
UCEC	TCGA-A5-A0GH-01	DDX24	ENST00000555054.1	chr14	94528820:94528967:94545370:94545967:94547464:94547492,	94545371	94545967	94545561	94545561	Frame_Shift_Del	T	-	p.K176fs
UCEC	TCGA-A5-A0GH-01	TP53BP1	ENST00000572085.1,ENST00000450115.2,ENST00000382044.4,ENST00000263801.3,ENST00000382039.3	chr15	43739563:43739683:43748089:43749416:43762055:43762264,	43748090	43749416	43749260	43749260	Frame_Shift_Del	C	-	p.D511fs
UCEC	TCGA-A5-A0GH-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-A5-A0GH-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-A5-A0GH-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-A5-A0GH-01	INO80E	ENST00000304516.7	chr16	30012078:30012157:30012249:30012361:30012734:30012851,30012078:30012157:30012249:30012361:30016541:30016644,	30012250	30012361	30012280	30012281	Frame_Shift_Del	CT	-	p.P105fs
UCEC	TCGA-A5-A0GH-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67645967	67645968	Frame_Shift_Del	TG	-	p.C299fs
UCEC	TCGA-A5-A0GH-01	NEK8	ENST00000268766.6,ENST00000543014.1,ENST00000592510.1	chr17	27064692:27064754:27064836:27065018:27065112:27065263,	27064837	27065018	27064915	27064915	Frame_Shift_Del	C	-	p.T323fs
UCEC	TCGA-A5-A0GH-01	STAT3	ENST00000585517.1,ENST00000264657.5,ENST00000404395.3,ENST00000389272.3,ENST00000588969.1	chr17	40490748:40490830:40491331:40491427:40497576:40497675,	40491332	40491427	40491420	40491420	Frame_Shift_Del	C	-	p.G127fs
UCEC	TCGA-A5-A0GH-01	RHPN2	ENST00000254260.3	chr19	33503552:33503630:33517409:33517538:33535154:33535270,33512476:33512552:33517409:33517538:33535154:33535270,	33517410	33517538	33517423	33517424	Frame_Shift_Ins	-	C	p.V100fs
UCEC	TCGA-A5-A0GM-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101478	27101490	Frame_Shift_Del	GCCCTGCTCCCCT	-	p.S1587fs
UCEC	TCGA-A5-A0GM-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101478	27101490	Frame_Shift_Del	GCCCTGCTCCCCT	-	p.S1587fs
UCEC	TCGA-A5-A0GM-01	HCFC1	ENST00000310441.7,ENST00000369984.4	chrX	153224781:153224942:153225252:153225612:153225685:153225865,	153225253	153225612	153225540	153225541	Frame_Shift_Ins	-	C	p.A386fs
UCEC	TCGA-A5-A0GN-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789282	150789283	Frame_Shift_Ins	-	G	p.R595fs
UCEC	TCGA-A5-A0GN-01	MORC4	ENST00000355610.4,ENST00000535534.1,ENST00000255495.7	chrX	106205241:106205340:106219813:106219914:106221309:106221429,	106219814	106219914	106219851	106219852	Frame_Shift_Ins	-	G	p.A373fs
UCEC	TCGA-A5-A0GQ-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717626	89717626	Frame_Shift_Del	C	-	p.V217fs
UCEC	TCGA-A5-A0GU-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591270	67591271	Frame_Shift_Ins	-	G	p.R590fs
UCEC	TCGA-A5-A0GU-01	CPN1	ENST00000441382.1,ENST00000370418.3	chr10	101814103:101814203:101816769:101816909:101823370:101823482,	101816770	101816909	101816832	101816833	Frame_Shift_Ins	-	G	p.P316fs
UCEC	TCGA-A5-A0GV-01	NCSTN	ENST00000368065.4,ENST00000368063.1,ENST00000535857.1,ENST00000392212.4,ENST00000294785.5	chr1	160326426:160326544:160326830:160327043:160327938:160328313,	160326831	160327043	160326944	160326945	Frame_Shift_Del	AC	-	p.E636fs
UCEC	TCGA-A5-A0GV-01	PRRC2C	ENST00000426496.2,ENST00000495585.1	chr1	171535371:171535560:171535730:171535982:171544065:171544267,	171535731	171535982	171535758	171535759	Frame_Shift_Del	AA	-	p.K2110fs
UCEC	TCGA-A5-A0GV-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827610	72827611	Frame_Shift_Ins	-	A	p.V2990fs
UCEC	TCGA-A5-A0GW-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-A5-A0GW-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097688	27097688	Frame_Shift_Del	A	-	p.K1093fs
UCEC	TCGA-A5-A0GW-01	USP39	ENST00000459775.1,ENST00000493829.1,ENST00000450066.2,ENST00000409766.3,ENST00000323701.6,ENST00000409470.1,ENST00000409025.1	chr2	85857843:85858069:85863175:85863253:85864491:85864559,	85863176	85863253	85863227	85863228	Frame_Shift_Ins	-	G	p.L334fs
UCEC	TCGA-A5-A0GW-01	ABI3BP	ENST00000383691.4,ENST00000471901.1,ENST00000495591.1,ENST00000284322.5,ENST00000487012.1,ENST00000471714.1	chr3	100511534:100511612:100513766:100513847:100515252:100515312,	100513767	100513847	100513801	100513802	Frame_Shift_Ins	-	G	p.P618fs
UCEC	TCGA-A5-A0GW-01	EXOC1	ENST00000349598.6,ENST00000381295.2,ENST00000346134.7	chr4	56762882:56763066:56765850:56766050:56768509:56768704,	56765851	56766050	56765965	56765965	Frame_Shift_Del	A	-	p.E751fs
UCEC	TCGA-A5-A0GW-01	NR3C2	ENST00000342437.4,ENST00000512865.1,ENST00000344721.4,ENST00000358102.3	chr4	149115921:149116013:149181129:149181269:149356255:149358012,	149181130	149181269	149181222	149181223	Frame_Shift_Ins	-	T	p.I602fs
UCEC	TCGA-A5-A0GW-01	NR3C2	ENST00000355292.3,ENST00000511528.1	chr4	149115921:149116013:149181117:149181269:149356255:149358012,	149181118	149181269	149181222	149181223	Frame_Shift_Ins	-	T	p.I602fs
UCEC	TCGA-A5-A0GW-01	MARVELD2	ENST00000512803.1	chr5	68711208:68711551:68715197:68716358:68720427:68720463,	68715198	68716358	68715357	68715357	Frame_Shift_Del	C	-	p.P49fs
UCEC	TCGA-A5-A0GW-01	DCTN4	ENST00000518015.1,ENST00000521448.1,ENST00000447998.2,ENST00000519313.1,ENST00000521533.1,ENST00000446090.2,ENST00000424236.1	chr5	150112957:150113037:150121675:150121719:150133040:150133219,	150121676	150121719	150121709	150121710	Frame_Shift_Ins	-	C	p.G132fs
UCEC	TCGA-A5-A0GW-01	TRIM26	ENST00000453195.1,ENST00000454678.2,ENST00000437089.1	chr6	30156943:30156976:30157194:30157310:30157789:30157812,	30157195	30157310	30157254	30157254	Frame_Shift_Del	T	-	p.K282fs
UCEC	TCGA-A5-A0GW-01	NUP205	ENST00000440390.2,ENST00000462316.1,ENST00000285968.6	chr7	135282147:135282166:135282745:135282955:135285617:135285702,	135282746	135282955	135282866	135282866	Frame_Shift_Del	C	-	p.P729fs
UCEC	TCGA-A5-A0GW-01	PLGRKT	ENST00000223864.2	chr9	5361077:5361187:5361757:5361888:5431896:5431983,	5361758	5361888	5361787	5361787	Frame_Shift_Del	A	-	p.F61fs
UCEC	TCGA-A5-A0GW-01	KIAA1217	ENST00000438429.1	chr10	24544256:24544525:24669797:24669996:24721923:24722122,24508554:24508838:24669797:24669996:24721923:24722122,24528123:24528266:24669797:24669996:24721923:24722122,	24669798	24669996	24669902	24669902	Frame_Shift_Del	G	-	p.E153fs
UCEC	TCGA-A5-A0GW-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1017617	1017618	Frame_Shift_Ins	-	G	p.V1728fs
UCEC	TCGA-A5-A0GW-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1017620	1017620	Frame_Shift_Del	T	-	p.T1727fs
UCEC	TCGA-A5-A0GW-01	C11orf49	ENST00000527667.1	chr11	47008758:47008861:47073938:47074069:47159195:47159280,46958330:46958402:47073938:47074069:47159195:47159280,47013093:47013198:47073938:47074069:47159195:47159280,	47073939	47074069	47074000	47074001	Frame_Shift_Ins	-	C	p.T71fs
UCEC	TCGA-A5-A0GW-01	CCDC90B	ENST00000529073.1,ENST00000455220.2,ENST00000525503.1,ENST00000529689.1,ENST00000529611.1,ENST00000527025.1,ENST00000527495.1,ENST00000260054.4	chr11	82984993:82985035:82985681:82985783:82991183:82991303,82984993:82985035:82985681:82985783:82989768:82989872,	82985682	82985783	82985714	82985714	Frame_Shift_Del	T	-	p.S132fs
UCEC	TCGA-A5-A0GW-01	CCDC90B	ENST00000534753.1	chr11	82984993:82985035:82985681:82985806:82989768:82989872,	82985682	82985806	82985714	82985714	Frame_Shift_Del	T	-	p.S132fs
UCEC	TCGA-A5-A0GW-01	HSD17B6	ENST00000555805.1,ENST00000554643.1,ENST00000554150.1,ENST00000555159.1,ENST00000322165.1	chr12	57175873:57176016:57178636:57178800:57180908:57181129,	57178637	57178800	57178753	57178753	Frame_Shift_Del	C	-	p.A230fs
UCEC	TCGA-A5-A0GW-01	SIRT4	ENST00000202967.4	chr12	120741682:120741861:120750258:120750553:120750686:120751044,	120750259	120750553	120750293	120750294	Frame_Shift_Ins	-	G	p.R178fs
UCEC	TCGA-A5-A0GW-01	UGGT2	ENST00000463054.1,ENST00000376747.3	chr13	96536744:96536934:96540145:96540225:96543115:96543218,	96540146	96540225	96540172	96540173	Frame_Shift_Ins	-	C	p.G1004fs
UCEC	TCGA-A5-A0GW-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000429436.2	chr14	103932050:103932130:103932308:103932428:103932679:103932779,	103932309	103932428	103932314	103932315	Frame_Shift_Del	GA	-	p.L261fs
UCEC	TCGA-A5-A0GW-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577440	48577440	Frame_Shift_Del	A	-	p.K875fs
UCEC	TCGA-A5-A0GW-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000348370.4	chr15	59280150:59280267:59323002:59323901:59344503:59344630,	59323003	59323901	59323704	59323704	Frame_Shift_Del	A	-	p.Q228fs
UCEC	TCGA-A5-A0GW-01	PALB2	ENST00000261584.4,ENST00000568219.1	chr16	23619184:23619333:23625324:23625412:23632682:23632710,	23625325	23625412	23625383	23625383	Frame_Shift_Del	T	-	p.K1048fs
UCEC	TCGA-A5-A0GW-01	SRCAP	ENST00000483083.1,ENST00000262518.4	chr16	30733445:30733607:30733883:30734069:30734283:30734550,	30733884	30734069	30733909	30733910	Frame_Shift_Ins	-	G	p.A1244fs
UCEC	TCGA-A5-A0GW-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67646013	67646014	Frame_Shift_Del	AC	-	p.N314fs
UCEC	TCGA-A5-A0GW-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7794257:7794382:7796603:7796887:7797122:7797253,	7796604	7796887	7796789	7796789	Frame_Shift_Del	C	-	p.T291fs
UCEC	TCGA-A5-A0GW-01	TOP2A	ENST00000423485.1	chr17	38551700:38551791:38552534:38552717:38554809:38554893,	38552535	38552717	38552642	38552642	Frame_Shift_Del	T	-	p.T1205fs
UCEC	TCGA-A5-A0GW-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248731	44248731	Frame_Shift_Del	C	-	p.G260fs
UCEC	TCGA-A5-A0GW-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698571	30698571	Frame_Shift_Del	A	-	p.R142fs
UCEC	TCGA-A5-A0GW-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53222963:53223033:53223320:53223920:53224112:53224250,	53223321	53223920	53223716	53223717	Frame_Shift_Del	AC	-	p.V1214fs
UCEC	TCGA-A5-A0GW-01	GDI1	ENST00000434049.1,ENST00000485143.1,ENST00000475976.1,ENST00000445564.1,ENST00000481304.1,ENST00000447750.2,ENST00000415109.1,ENST00000491154.1	chrX	153666868:153666976:153667110:153667210:153667351:153667398,	153667111	153667210	153667141	153667141	Frame_Shift_Del	C	-	p.P62fs
UCEC	TCGA-A5-A0GX-01	SERPIND1	ENST00000215727.5,ENST00000406799.1	chr22	21133783:21134489:21138259:21138533:21140291:21140436,	21138260	21138533	21138405	21138405	Frame_Shift_Del	C	-	p.L373fs
UCEC	TCGA-A5-A0R6-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	66986977:66987098:66988315:66988407:66989156:66989225,	66988316	66988407	66988406	66988406	Frame_Shift_Del	G	-	p.P1209_splice
UCEC	TCGA-A5-A0R6-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938474	44938502	Frame_Shift_Del	GCAGATGAAAACTGGGATCCCACTGGAAC	-	p.A1060fs
UCEC	TCGA-A5-A0R7-01	GCLC	ENST00000514933.1,ENST00000229416.6,ENST00000514004.1	chr6	53380906:53381020:53385575:53385758:53387212:53387325,	53385576	53385758	53385627	53385630	Frame_Shift_Del	GTAG	-	p.A131fs
UCEC	TCGA-A5-A0R7-01	KANK1	ENST00000382289.2,ENST00000382303.1,ENST00000382286.1,ENST00000382293.3,ENST00000382297.2,ENST00000489369.1	chr9	740791:740934:742204:742405:744490:744589,	742205	742405	742271	742274	Frame_Shift_Del	GCCT	-	p.A1255fs
UCEC	TCGA-A5-A0R7-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685292	89685293	Frame_Shift_Ins	-	ACCATTAC	p.N63fs
UCEC	TCGA-A5-A0R7-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711927	89711928	Frame_Shift_Ins	-	A	p.L182fs
UCEC	TCGA-A5-A0R7-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579559	7579559	Frame_Shift_Del	A	-	p.L43fs
UCEC	TCGA-A5-A0R8-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39798297	39798298	Frame_Shift_Ins	-	A	p.Q453fs
UCEC	TCGA-A5-A0R8-01	TTC21A	ENST00000440121.1,ENST00000301819.6,ENST00000430597.2	chr3	39166822:39167023:39167751:39167881:39169821:39169979,	39167752	39167881	39167772	39167772	Frame_Shift_Del	C	-	p.I479fs
UCEC	TCGA-A5-A0R8-01	ADH4	ENST00000423445.1,ENST00000508393.1,ENST00000265512.7,ENST00000506705.1,ENST00000505590.1,ENST00000512499.1,ENST00000504894.1,ENST00000504125.1,ENST00000503416.1	chr4	100060293:100060299:100062691:100062833:100063829:100063931,	100062692	100062833	100062725	100062725	Frame_Shift_Del	T	-	p.S77fs
UCEC	TCGA-A5-A0R8-01	IFRD1	ENST00000466459.1	chr7	112101920:112101971:112102055:112102234:112108035:112108159,	112102056	112102234	112102120	112102148	Frame_Shift_Del	ACACTACTGTTATTTGCAGCACTCCTAAT	-	p.D228fs
UCEC	TCGA-A5-A0R8-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690809	89690810	Frame_Shift_Ins	-	GAAA	p.A72fs
UCEC	TCGA-A5-A0R8-01	RAD9A	ENST00000529100.1	chr11	67163386:67163492:67163581:67163642:67163733:67163783,	67163582	67163642	67163619	67163620	Frame_Shift_Del	TT	-	p.L236fs
UCEC	TCGA-A5-A0R8-01	RAD9A	ENST00000538013.1,ENST00000544620.1,ENST00000307980.2,ENST00000535644.1	chr11	67163386:67163492:67163581:67163646:67163733:67163783,	67163582	67163646	67163619	67163620	Frame_Shift_Del	TT	-	p.L236fs
UCEC	TCGA-A5-A0R8-01	CCDC122	ENST00000444614.3	chr13	44410487:44411565:44432916:44433033:44433807:44434206,	44432917	44433033	44432934	44432935	Frame_Shift_Del	AT	-	p.K218fs
UCEC	TCGA-A5-A0R8-01	JAG1	ENST00000254958.5	chr20	10639115:10639370:10644610:10644662:10653348:10653654,	10644611	10644662	10644615	10644615	Frame_Shift_Del	G	-	p.T145fs
UCEC	TCGA-A5-A0R8-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662003	40662006	Frame_Shift_Del	GTCG	-	p.R590fs
UCEC	TCGA-A5-A0R9-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717749	89717749	Frame_Shift_Del	C	-	p.F258fs
UCEC	TCGA-A5-A0RA-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845543	63845543	Frame_Shift_Del	A	-	p.S428fs
UCEC	TCGA-A5-A0VO-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845593	63845605	Frame_Shift_Del	CAAACATGAAATA	-	p.I444fs
UCEC	TCGA-A5-A0VO-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000422392.2	chr16	68849417:68849662:68853182:68853328:68855903:68856128,	68853183	68853328	68853328	68853328	Frame_Shift_Del	G	-	p.G571_splice
UCEC	TCGA-A5-A0VQ-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-A5-A0VQ-01	CLCNKA	ENST00000491433.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4	chr1	16354512:16354614:16355255:16355340:16355620:16355794,	16355256	16355340	16355263	16355263	Frame_Shift_Del	G	-	p.V326fs
UCEC	TCGA-A5-A0VQ-01	CLCNKA	ENST00000464764.1	chr1	16354512:16354614:16355214:16355340:16355620:16355794,	16355215	16355340	16355263	16355263	Frame_Shift_Del	G	-	p.V326fs
UCEC	TCGA-A5-A0VQ-01	CAPZA1	ENST00000498626.1,ENST00000263168.3	chr1	113196219:113196283:113197086:113197293:113201643:113201723,	113197087	113197293	113197188	113197188	Frame_Shift_Del	C	-	p.D107fs
UCEC	TCGA-A5-A0VQ-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000507620.1	chr3	142215975:142216034:142217438:142217616:142218468:142218560,	142217439	142217616	142217557	142217557	Frame_Shift_Del	T	-	p.R1814fs
UCEC	TCGA-A5-A0VQ-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74310709:74310839:74313178:74313393:74315051:74315184,	74313179	74313393	74313372	74313372	Frame_Shift_Del	A	-	p.E346fs
UCEC	TCGA-A5-A0VQ-01	JARID2	ENST00000541660.1,ENST00000341776.2,ENST00000397311.3	chr6	15487537:15487773:15496362:15497401:15501137:15501640,	15496363	15497401	15496636	15496636	Frame_Shift_Del	G	-	p.G394fs
UCEC	TCGA-A5-A0VQ-01	SMAP1	ENST00000370452.3,ENST00000316999.5,ENST00000370455.3	chr6	71508359:71508440:71546643:71546731:71562242:71562367,	71546644	71546731	71546674	71546674	Frame_Shift_Del	A	-	p.K203fs
UCEC	TCGA-A5-A0VQ-01	CDKN2A	ENST00000498628.2	chr9	21968180:21968241:21970900:21971207:21994137:21994410,21968180:21968241:21970900:21971207:21993880:21994052,21968180:21968241:21970900:21971207:21974676:21974857,21968180:21968241:21970900:21971207:21994819:21994872,	21970901	21971207	21970951	21970951	Frame_Shift_Del	C	-	p.G136fs
UCEC	TCGA-A5-A0VQ-01	SLC2A8	ENST00000373371.3,ENST00000451404.1,ENST00000423934.1,ENST00000373360.3,ENST00000419917.1,ENST00000430147.1	chr9	130162242:130162285:130164835:130165032:130166016:130166070,130162242:130162285:130164835:130165032:130165938:130166026,	130164836	130165032	130165011	130165011	Frame_Shift_Del	C	-	p.D234fs
UCEC	TCGA-A5-A0VQ-01	DPP7	ENST00000463619.1,ENST00000483783.1,ENST00000371579.2	chr9	140006141:140006206:140006324:140006481:140006563:140006621,	140006325	140006481	140006327	140006327	Frame_Shift_Del	C	-	p.G402fs
UCEC	TCGA-A5-A0VQ-01	NEU3	ENST00000531619.1	chr11	74700062:74700199:74705553:74705765:74716457:74716514,74700062:74700199:74705553:74705765:74715349:74715450,	74705554	74705765	74705655	74705655	Frame_Shift_Del	C	-	p.P66fs
UCEC	TCGA-A5-A0VQ-01	AKAP3	ENST00000545990.2,ENST00000228850.1	chr12	4724676:4725060:4735661:4737971:4747266:4747362,	4735662	4737971	4736767	4736768	Frame_Shift_Ins	-	T	p.M434fs
UCEC	TCGA-A5-A0VQ-01	FBXO21	ENST00000550180.1,ENST00000330622.5,ENST00000427718.2	chr12	117615324:117615446:117624281:117624376:117627031:117627167,	117624282	117624376	117624319	117624320	Frame_Shift_Ins	-	A	p.F144fs
UCEC	TCGA-A5-A0VQ-01	MAN2C1	ENST00000565683.1,ENST00000563441.1,ENST00000563539.1,ENST00000562071.1,ENST00000569482.1,ENST00000566256.1,ENST00000563622.1,ENST00000421803.2,ENST00000267978.5,ENST00000565534.1,ENST00000568374.1	chr15	75656928:75657006:75658862:75658933:75659851:75659975,	75658863	75658933	75658879	75658879	Frame_Shift_Del	C	-	p.E136fs
UCEC	TCGA-A5-A0VQ-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53281204:53281415:53283782:53283978:53288349:53288517,	53283783	53283978	53283875	53283875	Frame_Shift_Del	T	-	p.V1253fs
UCEC	TCGA-A5-A0VQ-01	ZNF286A	ENST00000481540.1,ENST00000472486.1,ENST00000580393.1,ENST00000593105.1,ENST00000585194.1,ENST00000578258.1,ENST00000464847.2,ENST00000395894.2,ENST00000395893.2,ENST00000583566.1,ENST00000421016.1	chr17	15604465:15604554:15609700:15609815:15611468:15611561,	15609701	15609815	15609750	15609750	Frame_Shift_Del	G	-	p.W59fs
UCEC	TCGA-A5-A0VQ-01	COASY	ENST00000421097.2,ENST00000591779.1,ENST00000393818.2,ENST00000449624.1,ENST00000420359.1,ENST00000590958.1	chr17	40714950:40715340:40715978:40716193:40716463:40716595,	40715979	40716193	40716158	40716158	Frame_Shift_Del	G	-	p.G323fs
UCEC	TCGA-A5-A0VQ-01	NFIC	ENST00000589123.1,ENST00000589164.1,ENST00000443272.2	chr19	3452638:3452664:3453760:3453914:3456547:3456598,	3453761	3453914	3453853	3453853	Frame_Shift_Del	C	-	p.L454fs
UCEC	TCGA-A5-A0VQ-01	CHAF1A	ENST00000301280.5	chr19	4418025:4418073:4422562:4422792:4423331:4423392,	4422563	4422792	4422693	4422693	Frame_Shift_Del	A	-	p.E383fs
UCEC	TCGA-A5-A0VQ-01	LRFN3	ENST00000246529.3,ENST00000588831.1	chr19	36428021:36428457:36430311:36431742:36435449:36436095,	36430312	36431742	36431521	36431521	Frame_Shift_Del	C	-	p.D398fs
UCEC	TCGA-AP-A052-01	RHPN2	ENST00000254260.3	chr19	33503552:33503630:33517409:33517538:33535154:33535270,33512476:33512552:33517409:33517538:33535154:33535270,	33517410	33517538	33517423	33517424	Frame_Shift_Ins	-	C	p.V100fs
UCEC	TCGA-AP-A053-01	CCDC33	ENST00000558821.1,ENST00000560565.1,ENST00000558659.1,ENST00000398814.3,ENST00000268082.4,ENST00000321374.5,ENST00000321288.5	chr15	74622529:74622695:74623003:74623092:74623321:74623453,	74623004	74623092	74623089	74623090	Frame_Shift_Del	TC	-	p.I514fs
UCEC	TCGA-AP-A053-01	USP36	ENST00000588086.1,ENST00000312010.6,ENST00000542802.3,ENST00000589225.1	chr17	76798542:76798617:76799466:76800060:76802237:76802368,	76799467	76800060	76799860	76799861	Frame_Shift_Ins	-	G	p.Q806fs
UCEC	TCGA-AP-A05A-01	AGBL5	ENST00000360131.4	chr2	27291915:27291962:27292440:27292574:27292959:27293488,27291499:27291612:27292440:27292574:27292959:27293488,	27292441	27292574	27292516	27292517	Frame_Shift_Ins	-	C	p.T811fs
UCEC	TCGA-AP-A05A-01	ABCG8	ENST00000272286.2	chr2	44078722:44078961:44079492:44079625:44079737:44080007,	44079493	44079625	44079572	44079573	Frame_Shift_Ins	-	G	p.S214fs
UCEC	TCGA-AP-A05A-01	FER1L6	ENST00000522917.1,ENST00000399018.1	chr8	125035683:125035836:125047517:125047695:125052122:125052247,	125047518	125047695	125047669	125047670	Frame_Shift_Ins	-	C	p.H813fs
UCEC	TCGA-AP-A05A-01	MAGT1	ENST00000476168.1,ENST00000358075.6	chrX	77112229:77112370:77112853:77112994:77126304:77126422,	77112854	77112994	77112976	77112980	Frame_Shift_Del	GAGCT	-	p.S167fs
UCEC	TCGA-AP-A05D-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935370	36935371	Frame_Shift_Ins	-	G	p.P452fs
UCEC	TCGA-AP-A05D-01	PSD4	ENST00000418251.2,ENST00000441564.3,ENST00000245796.6	chr2	113931548:113931631:113939922:113941089:113942533:113942650,	113939923	113941089	113940835	113940836	Frame_Shift_Ins	-	G	p.W268fs
UCEC	TCGA-AP-A05D-01	MRPL51	ENST00000537701.1	chr12	6601316:6601633:6602027:6602138:6602882:6603006,	6602028	6602138	6602094	6602095	Frame_Shift_Ins	-	G	p.P41fs
UCEC	TCGA-AP-A05D-01	SRCAP	ENST00000483083.1,ENST00000262518.4	chr16	30733445:30733607:30733883:30734069:30734283:30734550,	30733884	30734069	30733909	30733910	Frame_Shift_Ins	-	G	p.A1244fs
UCEC	TCGA-AP-A05D-01	PER1	ENST00000317276.4	chr17	8047074:8047194:8048068:8048311:8049275:8049342,	8048069	8048311	8048249	8048250	Frame_Shift_Ins	-	G	p.P760fs
UCEC	TCGA-AP-A05D-01	PER1	ENST00000581082.1	chr17	8046583:8047194:8048077:8048311:8049275:8049342,	8048078	8048311	8048249	8048250	Frame_Shift_Ins	-	G	p.P760fs
UCEC	TCGA-AP-A05D-01	ETS2	ENST00000360214.3,ENST00000360938.3	chr21	40191426:40191690:40193509:40193628:40194597:40195472,	40193510	40193628	40193586	40193592	Frame_Shift_Del	GACTGGA	-	p.W524fs
UCEC	TCGA-AP-A05H-01	KHDRBS1	ENST00000307714.8	chr1	32502510:32502644:32503435:32503720:32504152:32504220,	32503436	32503720	32503458	32503459	Frame_Shift_Ins	-	G	p.R310fs
UCEC	TCGA-AP-A05H-01	KHDRBS1	ENST00000484270.2,ENST00000327300.7,ENST00000492989.1	chr1	32502510:32502644:32503435:32503637:32504152:32504220,	32503436	32503637	32503458	32503459	Frame_Shift_Ins	-	G	p.R310fs
UCEC	TCGA-AP-A05H-01	REG4	ENST00000354219.1,ENST00000256585.5	chr1	120337099:120337308:120341119:120341225:120342347:120342485,	120341120	120341225	120341123	120341124	Frame_Shift_Ins	-	A	p.N135fs
UCEC	TCGA-AP-A05H-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670999	151671000	Frame_Shift_Ins	-	C	p.K491fs
UCEC	TCGA-AP-A05H-01	AGPAT4	ENST00000457520.2,ENST00000366911.5,ENST00000320285.4	chr6	161557286:161557666:161560453:161560652:161567555:161567631,	161560454	161560652	161560588	161560589	Frame_Shift_Ins	-	G	p.R303fs
UCEC	TCGA-AP-A05H-01	ARHGEF25	ENST00000333972.7	chr12	58005217:58005774:58006712:58006927:58007046:58007142,58004352:58004467:58006712:58006927:58007046:58007142,	58006713	58006927	58006824	58006825	Frame_Shift_Ins	-	C	p.G70fs
UCEC	TCGA-AP-A05H-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967246	64967247	Frame_Shift_Ins	-	A	p.D731fs
UCEC	TCGA-AP-A05H-01	PNCK	ENST00000488994.1,ENST00000370142.1,ENST00000466074.1,ENST00000393831.2,ENST00000447676.2,ENST00000370150.1,ENST00000340888.3,ENST00000370145.4	chrX	152936410:152936451:152936532:152936645:152936739:152936815,	152936533	152936645	152936626	152936627	Frame_Shift_Ins	-	G	p.P294fs
UCEC	TCGA-AP-A05J-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491008	155491009	Frame_Shift_Ins	-	T	p.K101fs
UCEC	TCGA-AP-A05J-01	SLC1A3	ENST00000265113.4,ENST00000381918.3	chr5	36676993:36677286:36679728:36679962:36680496:36680691,	36679729	36679962	36679798	36679799	Frame_Shift_Ins	-	G	p.I310fs
UCEC	TCGA-AP-A05J-01	FBXO24	ENST00000465843.1,ENST00000474649.1,ENST00000241071.6,ENST00000360609.2	chr7	100184248:100184287:100187599:100187698:100187796:100187938,	100187600	100187698	100187685	100187686	Frame_Shift_Ins	-	C	p.F80fs
UCEC	TCGA-AP-A05N-01	PRDM2	ENST00000413440.1,ENST00000235372.7,ENST00000311066.5	chr1	14075930:14075982:14099572:14099683:14142921:14143065,14075930:14075982:14099572:14099683:14104912:14104958,	14099573	14099683	14099578	14099578	Frame_Shift_Del	A	-	p.K173fs
UCEC	TCGA-AP-A05N-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097687	27097688	Frame_Shift_Ins	-	A	p.L1092fs
UCEC	TCGA-AP-A05N-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81_splice
UCEC	TCGA-AP-A05N-01	GPATCH2	ENST00000366935.3	chr1	217622590:217622679:217665021:217665092:217671697:217671737,	217665022	217665092	217665045	217665046	Frame_Shift_Ins	-	T	p.N418fs
UCEC	TCGA-AP-A05N-01	IFT172	ENST00000507184.1,ENST00000260570.3	chr2	27688277:27688385:27688612:27688749:27693794:27693962,	27688613	27688749	27688717	27688718	Frame_Shift_Ins	-	C	p.G575fs
UCEC	TCGA-AP-A05N-01	FABP1	ENST00000393750.3	chr2	88424012:88424105:88425694:88425867:88427469:88427560,	88425695	88425867	88425732	88425733	Frame_Shift_Ins	-	C	p.E68fs
UCEC	TCGA-AP-A05N-01	ORC4	ENST00000535373.1,ENST00000536575.1,ENST00000264169.2,ENST00000392857.5,ENST00000540442.1,ENST00000392858.1	chr2	148701004:148701091:148705619:148705793:148712915:148712964,148701004:148701091:148705619:148705793:148709941:148710082,	148705620	148705793	148705768	148705769	Frame_Shift_Ins	-	T	p.R205fs
UCEC	TCGA-AP-A05N-01	EPC2	ENST00000258484.6,ENST00000457184.1	chr2	149402608:149402739:149447782:149447942:149501190:149501336,	149447783	149447942	149447828	149447829	Frame_Shift_Ins	-	A	p.E67fs
UCEC	TCGA-AP-A05N-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551296	Frame_Shift_Del	A	-	p.L907fs
UCEC	TCGA-AP-A05N-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551296	Frame_Shift_Del	A	-	p.L907fs
UCEC	TCGA-AP-A05N-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233697570:233697803:233704558:233704681:233708755:233708906,	233704559	233704681	233704621	233704621	Frame_Shift_Del	G	-	p.T964fs
UCEC	TCGA-AP-A05N-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37365167	37365167	Frame_Shift_Del	A	-	p.E597fs
UCEC	TCGA-AP-A05N-01	LARS2	ENST00000414984.1,ENST00000415258.1,ENST00000265537.3	chr3	45530188:45530304:45533008:45533292:45537766:45537865,	45533009	45533292	45533245	45533245	Frame_Shift_Del	C	-	p.G492fs
UCEC	TCGA-AP-A05N-01	ZCCHC4	ENST00000505412.1,ENST00000302874.4	chr4	25351113:25351264:25353210:25353311:25363480:25363602,	25353211	25353311	25353254	25353254	Frame_Shift_Del	T	-	p.Y318fs
UCEC	TCGA-AP-A05N-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409fs
UCEC	TCGA-AP-A05N-01	USP53	ENST00000274030.6,ENST00000450251.1	chr4	120181661:120181808:120182869:120183019:120188474:120188590,	120182870	120183019	120182900	120182900	Frame_Shift_Del	A	-	p.K285fs
UCEC	TCGA-AP-A05N-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727193	137727194	Frame_Shift_Ins	-	C	p.Q624fs
UCEC	TCGA-AP-A05N-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647320	Frame_Shift_Del	A	-	p.K814fs
UCEC	TCGA-AP-A05N-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675269	176675269	Frame_Shift_Del	A	-	p.K1529fs
UCEC	TCGA-AP-A05N-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374580	180374580	Frame_Shift_Del	T	-	p.F248fs
UCEC	TCGA-AP-A05N-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374580	180374580	Frame_Shift_Del	T	-	p.F248fs
UCEC	TCGA-AP-A05N-01	NOL7	ENST00000474485.1	chr6	13620647:13620717:13620985:13621088:13632624:13632971,	13620986	13621088	13620991	13620992	Frame_Shift_Ins	-	A	p.Q236fs
UCEC	TCGA-AP-A05N-01	C6orf118	ENST00000230301.8	chr6	165713852:165713975:165715057:165715785:165723050:165723096,	165715058	165715785	165715450	165715451	Frame_Shift_Ins	-	G	p.P120fs
UCEC	TCGA-AP-A05N-01	ATAD2	ENST00000287394.5,ENST00000519124.1,ENST00000521903.1,ENST00000521496.1	chr8	124383909:124384075:124384876:124384926:124392768:124392917,	124384877	124384926	124384893	124384893	Frame_Shift_Del	T	-	p.K118fs
UCEC	TCGA-AP-A05N-01	AGTPBP1	ENST00000491784.1	chr9	88293249:88293313:88296182:88296250:88307603:88307695,88292350:88292497:88296182:88296250:88307603:88307695,	88296183	88296250	88296244	88296245	Frame_Shift_Ins	-	T	p.T107fs
UCEC	TCGA-AP-A05N-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845590	63845591	Frame_Shift_Ins	-	ATCAAACA	p.R443fs
UCEC	TCGA-AP-A05N-01	ST5	ENST00000534127.1,ENST00000313726.6,ENST00000357665.1	chr11	8747619:8747756:8751496:8752756:8772167:8772272,	8751497	8752756	8752619	8752619	Frame_Shift_Del	G	-	p.P73fs
UCEC	TCGA-AP-A05N-01	DENND5A	ENST00000328194.3,ENST00000527700.1,ENST00000530044.1,ENST00000524446.1	chr11	9166608:9166660:9167216:9167362:9171627:9171720,9166608:9166660:9167216:9167362:9168576:9168698,	9167217	9167362	9167316	9167317	Frame_Shift_Ins	-	C	p.G968fs
UCEC	TCGA-AP-A05N-01	PPFIA1	ENST00000527612.1,ENST00000528750.1,ENST00000526262.1,ENST00000389547.3,ENST00000532504.1,ENST00000253925.7,ENST00000530390.1	chr11	70201744:70201917:70202266:70202360:70208200:70208281,	70202267	70202360	70202353	70202354	Frame_Shift_Ins	-	A	p.Q859fs
UCEC	TCGA-AP-A05N-01	TPTE2	ENST00000382977.4,ENST00000400230.2	chr13	20039604:20039704:20041364:20041484:20048053:20048215,	20041365	20041484	20041394	20041394	Frame_Shift_Del	A	-	p.F161fs
UCEC	TCGA-AP-A05N-01	LRFN5	ENST00000554171.1	chr14	42236056:42236232:42355808:42357213:42368119:42368163,	42355809	42357213	42356521	42356521	Frame_Shift_Del	T	-	p.S231fs
UCEC	TCGA-AP-A05N-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831543	72831544	Frame_Shift_Ins	-	T	p.L1679fs
UCEC	TCGA-AP-A05N-01	PHF12	ENST00000332830.4,ENST00000589176.1	chr17	27233122:27233535:27233873:27234012:27234607:27234690,	27233874	27234012	27233908	27233909	Frame_Shift_Ins	-	G	p.P882fs
UCEC	TCGA-AP-A05N-01	SCRN2	ENST00000581645.1	chr17	45915701:45915816:45915896:45916085:45916156:45916372,	45915897	45916085	45916059	45916059	Frame_Shift_Del	C	-	p.G259fs
UCEC	TCGA-AP-A05N-01	SCRN2	ENST00000290216.9,ENST00000407215.3,ENST00000584123.1,ENST00000579856.1,ENST00000584567.1,ENST00000582459.1	chr17	45915701:45915816:45915896:45916062:45916156:45916372,	45915897	45916062	45916059	45916059	Frame_Shift_Del	C	-	p.G259fs
UCEC	TCGA-AP-A05N-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256207	9256207	Frame_Shift_Del	A	-	p.E981fs
UCEC	TCGA-AP-A05N-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19154750	19154750	Frame_Shift_Del	T	-	p.S19fs
UCEC	TCGA-AP-A05N-01	SIGLEC6	ENST00000343300.4,ENST00000391797.3	chr19	52023252:52023509:52032977:52033235:52033690:52033738,	52032978	52033235	52033148	52033148	Frame_Shift_Del	G	-	p.P281fs
UCEC	TCGA-AP-A05N-01	WDR13	ENST00000471334.1,ENST00000376729.5,ENST00000218056.5	chrX	48456345:48456425:48457104:48457345:48457740:48457850,	48457105	48457345	48457201	48457201	Frame_Shift_Del	C	-	p.H46fs
UCEC	TCGA-AP-A05N-01	WDR13	ENST00000498631.1,ENST00000497756.2,ENST00000486125.1	chrX	48456345:48456425:48457138:48457345:48457740:48457850,	48457139	48457345	48457201	48457201	Frame_Shift_Del	C	-	p.H46fs
UCEC	TCGA-AP-A05N-01	FAAH2	ENST00000374900.4	chrX	57405083:57405219:57407344:57407462:57458350:57458470,	57407345	57407462	57407348	57407348	Frame_Shift_Del	A	-	p.L294fs
UCEC	TCGA-AP-A05P-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101259	27101260	Frame_Shift_Ins	-	T	p.T1514fs
UCEC	TCGA-AP-A05P-01	SLC18A1	ENST00000517776.1,ENST00000276373.5,ENST00000519026.1,ENST00000265808.7,ENST00000440926.1	chr8	20003298:20003387:20004768:20004902:20005113:20005233,	20004769	20004902	20004787	20004788	Frame_Shift_Ins	-	G	p.P482fs
UCEC	TCGA-AP-A05P-01	MAP2K1	ENST00000307102.5,ENST00000566326.1	chr15	66774092:66774217:66777327:66777529:66779565:66779630,	66777328	66777529	66777405	66777405	Frame_Shift_Del	G	-	p.A257fs
UCEC	TCGA-AP-A05P-01	MED13	ENST00000397786.2	chr17	60045395:60045619:60050087:60050249:60059558:60060475,	60050088	60050249	60050165	60050166	Frame_Shift_Ins	-	T	p.R1297fs
UCEC	TCGA-AP-A0L8-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000366919.2	chr6	161455389:161455481:161469647:161471011:161491639:161491882,	161469648	161471011	161470176	161470176	Frame_Shift_Del	T	-	p.I291fs
UCEC	TCGA-AP-A0L8-01	ARRDC1	ENST00000371421.4	chr9	140508750:140508927:140509010:140509452:140509525:140509810,	140509011	140509452	140509382	140509383	Frame_Shift_Ins	-	G	p.S389fs
UCEC	TCGA-AP-A0L9-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530505	150530506	Frame_Shift_Ins	-	G	p.F777fs
UCEC	TCGA-AP-A0L9-01	TFAP2B	ENST00000263046.4,ENST00000393655.3	chr6	50803773:50803993:50805687:50805806:50807868:50808010,	50805688	50805806	50805765	50805765	Frame_Shift_Del	G	-	p.R300fs
UCEC	TCGA-AP-A0L9-01	BEST1	ENST00000378042.3	chr11	61726969:61727050:61727363:61727515:61729726:61729843,61725617:61725770:61727363:61727515:61729726:61729843,	61727364	61727515	61727447	61727448	Frame_Shift_Ins	-	C	p.Q284fs
UCEC	TCGA-AP-A0LD-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-AP-A0LD-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101612	27101612	Frame_Shift_Del	C	-	p.P1632fs
UCEC	TCGA-AP-A0LD-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101612	27101612	Frame_Shift_Del	C	-	p.P1632fs
UCEC	TCGA-AP-A0LD-01	ST7L	ENST00000360743.4	chr1	113068607:113068733:113084572:113084712:113093222:113093315,113068607:113068733:113084572:113084712:113098489:113098498,	113084573	113084712	113084682	113084682	Frame_Shift_Del	T	-	p.K507fs
UCEC	TCGA-AP-A0LD-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.G778fs
UCEC	TCGA-AP-A0LD-01	GBA	ENST00000427500.3	chr1	155208354:155208441:155209676:155209868:155210420:155210508,	155209677	155209868	155209781	155209781	Frame_Shift_Del	G	-	p.P68fs
UCEC	TCGA-AP-A0LD-01	ROBO2	ENST00000475334.1,ENST00000461745.1,ENST00000487694.3,ENST00000473767.1	chr3	77671377:77671583:77684020:77684194:77693854:77694046,	77684021	77684194	77684125	77684125	Frame_Shift_Del	A	-	p.K1293fs
UCEC	TCGA-AP-A0LD-01	WWC1	ENST00000521089.1,ENST00000524228.1,ENST00000265293.4,ENST00000393895.3	chr5	167836926:167837000:167841352:167841595:167849012:167849053,	167841353	167841595	167841544	167841544	Frame_Shift_Del	A	-	p.E378fs
UCEC	TCGA-AP-A0LD-01	TRIM26	ENST00000453195.1,ENST00000454678.2,ENST00000437089.1	chr6	30156943:30156976:30157194:30157310:30157789:30157812,	30157195	30157310	30157253	30157254	Frame_Shift_Ins	-	T	p.K282fs
UCEC	TCGA-AP-A0LD-01	TCP1	ENST00000538530.1	chr6	160206505:160206528:160206931:160207052:160208774:160208934,	160206932	160207052	160207001	160207001	Frame_Shift_Del	T	-	p.N103fs
UCEC	TCGA-AP-A0LD-01	TCP1	ENST00000420894.2,ENST00000545764.1,ENST00000539948.1,ENST00000392168.2,ENST00000321394.7,ENST00000537390.1	chr6	160206505:160206528:160206931:160207029:160208774:160208903,	160206932	160207029	160207001	160207001	Frame_Shift_Del	T	-	p.N103fs
UCEC	TCGA-AP-A0LD-01	CASD1	ENST00000297273.4	chr7	94164620:94164835:94166783:94167206:94168278:94168368,	94166784	94167206	94167193	94167193	Frame_Shift_Del	A	-	p.E418fs
UCEC	TCGA-AP-A0LD-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717683	89717684	Frame_Shift_Ins	-	A	p.D236fs
UCEC	TCGA-AP-A0LD-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108163345:108163520:108164039:108164204:108165653:108165786,	108164040	108164204	108164164	108164164	Frame_Shift_Del	A	-	p.Q1579fs
UCEC	TCGA-AP-A0LD-01	PLCZ1	ENST00000447925.2,ENST00000266505.7,ENST00000435379.1,ENST00000538330.1,ENST00000539875.1,ENST00000543219.1,ENST00000318197.6	chr12	18837063:18837213:18841022:18841152:18847843:18847978,	18841023	18841152	18841025	18841025	Frame_Shift_Del	T	-	p.N530fs
UCEC	TCGA-AP-A0LD-01	MYCBP2	ENST00000357337.6,ENST00000544440.2,ENST00000407578.2	chr13	77670446:77670616:77671504:77673148:77695507:77695630,	77671505	77673148	77672286	77672286	Frame_Shift_Del	T	-	p.K3001fs
UCEC	TCGA-AP-A0LD-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32562675	32562675	Frame_Shift_Del	T	-	p.F934fs
UCEC	TCGA-AP-A0LD-01	PIGB	ENST00000539642.1	chr15	55611470:55611611:55621921:55622052:55626064:55626205,	55621922	55622052	55621922	55621922	Frame_Shift_Del	T	-	p.F175_splice
UCEC	TCGA-AP-A0LD-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190580	72190580	Frame_Shift_Del	A	-	p.Y1422fs
UCEC	TCGA-AP-A0LD-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828912	72828913	Frame_Shift_Del	GC	-	p.A2556fs
UCEC	TCGA-AP-A0LD-01	PRPSAP2	ENST00000395656.2,ENST00000268835.2,ENST00000574451.1,ENST00000419071.2,ENST00000536323.1,ENST00000492129.1	chr17	18827226:18827297:18832123:18832270:18833852:18834047,	18832124	18832270	18832235	18832236	Frame_Shift_Ins	-	C	p.A306fs
UCEC	TCGA-AP-A0LD-01	MKNK2	ENST00000589441.1	chr19	2037630:2037828:2039629:2039855:2040132:2040176,	2039630	2039855	2039638	2039639	Frame_Shift_Ins	-	T	p.P457fs
UCEC	TCGA-AP-A0LD-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452519	58452519	Frame_Shift_Del	T	-	p.N1024fs
UCEC	TCGA-AP-A0LE-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.P2802fs
UCEC	TCGA-AP-A0LE-01	ZNF326	ENST00000370447.3,ENST00000455342.2,ENST00000340281.4,ENST00000394583.3	chr1	90475646:90475845:90478684:90478796:90482875:90483023,	90478685	90478796	90478763	90478763	Frame_Shift_Del	A	-	p.E298fs
UCEC	TCGA-AP-A0LE-01	EVI5	ENST00000543509.1,ENST00000370331.1,ENST00000540033.1	chr1	93142714:93142775:93159358:93159456:93159855:93159945,	93159359	93159456	93159365	93159366	Frame_Shift_Ins	-	T	p.M408fs
UCEC	TCGA-AP-A0LE-01	ST7L	ENST00000360743.4	chr1	113068607:113068733:113084572:113084712:113093222:113093315,113068607:113068733:113084572:113084712:113098489:113098498,	113084573	113084712	113084681	113084682	Frame_Shift_Ins	-	T	p.K507fs
UCEC	TCGA-AP-A0LE-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510414	169510415	Frame_Shift_Ins	-	GA	p.P1305fs
UCEC	TCGA-AP-A0LE-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197073342	197073342	Frame_Shift_Del	T	-	p.N1680fs
UCEC	TCGA-AP-A0LE-01	NAV1	ENST00000367295.1,ENST00000367302.1,ENST00000367297.4,ENST00000367300.3,ENST00000367296.4,ENST00000295624.6	chr1	201778569:201778665:201779073:201779233:201779650:201779886,	201779074	201779233	201779176	201779176	Frame_Shift_Del	C	-	p.P1502fs
UCEC	TCGA-AP-A0LE-01	SPDYA	ENST00000334056.5,ENST00000379579.4	chr2	29052015:29052185:29063037:29063335:29072715:29073300,	29063038	29063335	29063182	29063182	Frame_Shift_Del	A	-	p.K233fs
UCEC	TCGA-AP-A0LE-01	CCNT2	ENST00000295238.6,ENST00000452839.1,ENST00000537343.1,ENST00000419781.1,ENST00000417175.1,ENST00000475094.1,ENST00000264157.5	chr2	135677379:135677461:135694410:135694539:135696571:135696632,	135694411	135694539	135694432	135694432	Frame_Shift_Del	T	-	p.F88fs
UCEC	TCGA-AP-A0LE-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211019062	211019062	Frame_Shift_Del	A	-	p.L82fs
UCEC	TCGA-AP-A0LE-01	PLXNB1	ENST00000296440.6,ENST00000358459.4,ENST00000485535.1,ENST00000448774.2,ENST00000456774.1,ENST00000478171.1,ENST00000358536.4	chr3	48450978:48451139:48451313:48451486:48451704:48451774,	48451314	48451486	48451452	48451453	Frame_Shift_Ins	-	C	p.G1880fs
UCEC	TCGA-AP-A0LE-01	ATRIP	ENST00000346691.4,ENST00000454733.1,ENST00000320211.3,ENST00000357105.6,ENST00000424906.1,ENST00000412052.1	chr3	48500761:48500853:48501185:48501315:48501508:48501561,	48501186	48501315	48501288	48501288	Frame_Shift_Del	C	-	p.T343fs
UCEC	TCGA-AP-A0LE-01	WNT5A	ENST00000474267.1,ENST00000264634.4,ENST00000497027.1,ENST00000482079.1	chr3	55508364:55508657:55513341:55513592:55514812:55514946,	55513342	55513592	55513504	55513505	Frame_Shift_Del	GA	-	p.S76fs
UCEC	TCGA-AP-A0LE-01	NAALADL2	ENST00000489299.1,ENST00000473253.1,ENST00000454872.1,ENST00000414826.1	chr3	175181188:175181281:175184766:175184972:175189426:175189546,	175184767	175184972	175184883	175184884	Frame_Shift_Del	AA	-	p.K482fs
UCEC	TCGA-AP-A0LE-01	LAMP3	ENST00000466939.1,ENST00000265598.3	chr3	182858325:182858383:182870162:182870291:182871469:182872179,	182870163	182870291	182870284	182870285	Frame_Shift_Ins	-	A	p.S256fs
UCEC	TCGA-AP-A0LE-01	TMEM44	ENST00000273580.7,ENST00000494894.1,ENST00000347147.4,ENST00000381975.3,ENST00000473092.1	chr3	194336297:194336426:194337827:194337998:194343952:194344039,	194337828	194337998	194337843	194337844	Frame_Shift_Del	CG	-	p.A303fs
UCEC	TCGA-AP-A0LE-01	SLC4A9	ENST00000507527.1,ENST00000230993.6	chr5	139739799:139740051:139740324:139740557:139740838:139740952,	139740325	139740557	139740447	139740447	Frame_Shift_Del	C	-	p.A118fs
UCEC	TCGA-AP-A0LE-01	SLC4A9	ENST00000506545.1,ENST00000432095.2	chr5	139739799:139740051:139740396:139740557:139740838:139740952,	139740397	139740557	139740447	139740447	Frame_Shift_Del	C	-	p.A118fs
UCEC	TCGA-AP-A0LE-01	FAT2	ENST00000261800.5	chr5	150920127:150920324:150921845:150925898:150928855:150929066,	150921846	150925898	150923557	150923558	Frame_Shift_Ins	-	G	p.P2377fs
UCEC	TCGA-AP-A0LE-01	SENP6	ENST00000370010.2,ENST00000541192.1,ENST00000370014.3,ENST00000503501.1,ENST00000447266.2	chr6	76423228:76423297:76423390:76423541:76425100:76425593,	76423391	76423541	76423416	76423416	Frame_Shift_Del	A	-	p.K1002fs
UCEC	TCGA-AP-A0LE-01	SERAC1	ENST00000607742.1,ENST00000607071.1	chr6	158569896:158569986:158571484:158571621:158579304:158579396,	158571485	158571621	158571521	158571522	Frame_Shift_Ins	-	AT	p.Y76fs
UCEC	TCGA-AP-A0LE-01	TNRC18	ENST00000434361.1,ENST00000399537.4,ENST00000430969.1	chr7	5428935:5428967:5430115:5430259:5434070:5434114,	5430116	5430259	5430195	5430195	Frame_Shift_Del	G	-	p.P136fs
UCEC	TCGA-AP-A0LE-01	DNAH11	ENST00000328843.6,ENST00000409508.3	chr7	21659573:21659696:21675488:21675713:21677228:21677320,	21675489	21675713	21675634	21675634	Frame_Shift_Del	T	-	p.I1554fs
UCEC	TCGA-AP-A0LE-01	ST6GALNAC6	ENST00000373141.1,ENST00000373144.3,ENST00000291839.5,ENST00000373146.1	chr9	130649032:130649067:130649762:130649870:130652934:130653322,130649032:130649067:130649762:130649870:130656790:130656908,130649032:130649067:130649762:130649870:130652915:130653322,	130649763	130649870	130649774	130649774	Frame_Shift_Del	G	-	p.P267fs
UCEC	TCGA-AP-A0LE-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
UCEC	TCGA-AP-A0LE-01	VSTM4	ENST00000332853.4	chr10	50285263:50285371:50293999:50294068:50315638:50316040,	50294000	50294068	50294004	50294004	Frame_Shift_Del	A	-	p.F174fs
UCEC	TCGA-AP-A0LE-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685281	89685294	Frame_Shift_Del	CAAAGCATAAAAAC	-	p.S59fs
UCEC	TCGA-AP-A0LE-01	TDRD1	ENST00000422662.1,ENST00000369282.1,ENST00000251864.2,ENST00000369281.2	chr10	115987668:115987715:115987796:115987884:115991244:115991486,	115987797	115987884	115987801	115987801	Frame_Shift_Del	A	-	p.E1152fs
UCEC	TCGA-AP-A0LE-01	MLXIP	ENST00000319080.7	chr12	122616838:122616930:122617894:122618534:122619770:122619892,	122617895	122618534	122618185	122618185	Frame_Shift_Del	C	-	p.N461fs
UCEC	TCGA-AP-A0LE-01	KNTC1	ENST00000450485.2,ENST00000333479.7	chr12	123047184:123047246:123052807:123052919:123054227:123054371,	123052808	123052919	123052857	123052858	Frame_Shift_Ins	-	T	p.I552fs
UCEC	TCGA-AP-A0LE-01	POSTN	ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4,ENST00000541179.1	chr13	38160918:38161065:38161958:38162123:38164508:38164666,	38161959	38162123	38162023	38162023	Frame_Shift_Del	T	-	p.N181fs
UCEC	TCGA-AP-A0LE-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054754	72054755	Frame_Shift_Ins	-	C	p.G55fs
UCEC	TCGA-AP-A0LE-01	SLFN13	ENST00000532210.1	chr17	33770807:33770939:33771633:33771720:33774286:33774413,	33771634	33771720	33771672	33771673	Frame_Shift_Ins	-	T	p.T343fs
UCEC	TCGA-AP-A0LE-01	SLFN13	ENST00000285013.6	chr17	33770807:33770939:33771633:33772712:33774286:33774413,	33771634	33772712	33771672	33771673	Frame_Shift_Ins	-	T	p.T343fs
UCEC	TCGA-AP-A0LE-01	TAF4B	ENST00000400466.2,ENST00000578121.1,ENST00000418698.3,ENST00000269142.5	chr18	23845133:23845279:23847479:23847587:23854626:23854788,	23847480	23847587	23847525	23847525	Frame_Shift_Del	A	-	p.K179fs
UCEC	TCGA-AP-A0LE-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
UCEC	TCGA-AP-A0LE-01	PKN1	ENST00000242783.6,ENST00000585839.1,ENST00000588200.1,ENST00000342216.4	chr19	14561707:14561921:14562640:14562835:14568842:14568891,	14562641	14562835	14562741	14562741	Frame_Shift_Del	C	-	p.R357fs
UCEC	TCGA-AP-A0LE-01	MEI1	ENST00000401548.3,ENST00000540833.1,ENST00000300398.4,ENST00000400107.1	chr22	42125668:42125783:42126524:42126641:42128248:42128348,	42126525	42126641	42126614	42126614	Frame_Shift_Del	T	-	p.F357fs
UCEC	TCGA-AP-A0LE-01	PACSIN2	ENST00000402229.1,ENST00000263246.3,ENST00000403744.3	chr22	43272142:43272339:43272893:43273016:43275053:43275172,	43272894	43273016	43272955	43272956	Frame_Shift_Ins	-	T	p.P363fs
UCEC	TCGA-AP-A0LF-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422305	229422305	Frame_Shift_Del	A	-	p.E35fs
UCEC	TCGA-AP-A0LG-01	MAN1C1	ENST00000263979.3,ENST00000374329.1,ENST00000374332.4	chr1	26098147:26098263:26104595:26104815:26107430:26107603,	26104596	26104815	26104659	26104659	Frame_Shift_Del	G	-	p.G441fs
UCEC	TCGA-AP-A0LG-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088739	27088739	Frame_Shift_Del	C	-	p.T783fs
UCEC	TCGA-AP-A0LG-01	JAK1	ENST00000342505.4	chr1	65334993:65335157:65339052:65339206:65344707:65344746,	65339053	65339206	65339111	65339111	Frame_Shift_Del	T	-	p.K142fs
UCEC	TCGA-AP-A0LG-01	SMG7	ENST00000515829.2,ENST00000347615.2,ENST00000456731.2	chr1	183514064:183514447:183515100:183515472:183516237:183516387,183514322:183514447:183515100:183515472:183518342:183518423,	183515101	183515472	183515267	183515267	Frame_Shift_Del	A	-	p.E846fs
UCEC	TCGA-AP-A0LG-01	ABCG5	ENST00000543989.1,ENST00000409962.1,ENST00000405322.1,ENST00000486512.1,ENST00000260645.1	chr2	44058907:44059006:44059085:44059222:44064972:44065094,	44059086	44059222	44059154	44059154	Frame_Shift_Del	C	-	p.E112fs
UCEC	TCGA-AP-A0LG-01	MCM6	ENST00000264156.2	chr2	136597195:136598521:136602114:136602254:136603806:136603962,	136602115	136602254	136602153	136602153	Frame_Shift_Del	T	-	p.R771fs
UCEC	TCGA-AP-A0LG-01	DAPL1	ENST00000409042.1	chr2	159651828:159651942:159660793:159660881:159663566:159663627,	159660794	159660881	159660856	159660856	Frame_Shift_Del	A	-	p.K41fs
UCEC	TCGA-AP-A0LG-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165547795	165547795	Frame_Shift_Del	T	-	p.T343fs
UCEC	TCGA-AP-A0LG-01	PPP1R2	ENST00000438848.1,ENST00000328432.3	chr3	195243722:195243740:195245814:195245982:195250489:195250584,	195245815	195245982	195245975	195245976	Frame_Shift_Ins	-	T	p.K137fs
UCEC	TCGA-AP-A0LG-01	GCLC	ENST00000229416.6,ENST00000513939.1,ENST00000514004.1	chr6	53385575:53385758:53387212:53387325:53409293:53409406,	53387213	53387325	53387284	53387284	Frame_Shift_Del	T	-	p.K64fs
UCEC	TCGA-AP-A0LG-01	IBTK	ENST00000306270.7,ENST00000503400.1,ENST00000510291.1,ENST00000445419.2,ENST00000505222.1,ENST00000503631.1	chr6	82883083:82883155:82891595:82891745:82900789:82900933,	82891596	82891745	82891683	82891683	Frame_Shift_Del	T	-	p.K1213fs
UCEC	TCGA-AP-A0LG-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855927	Frame_Shift_Del	G	-	p.R297fs
UCEC	TCGA-AP-A0LG-01	ZC3HC1	ENST00000311873.5,ENST00000477578.1,ENST00000467642.1,ENST00000471022.1,ENST00000358303.4	chr7	129663516:129663563:129664102:129664346:129665997:129666152,	129664103	129664346	129664275	129664275	Frame_Shift_Del	C	-	p.G283fs
UCEC	TCGA-AP-A0LG-01	CPNE3	ENST00000517391.1,ENST00000521271.1,ENST00000198765.4	chr8	87557024:87557066:87558822:87558909:87559938:87559998,	87558823	87558909	87558862	87558862	Frame_Shift_Del	A	-	p.K258fs
UCEC	TCGA-AP-A0LG-01	PTPDC1	ENST00000375360.3,ENST00000288976.3	chr9	96857598:96857736:96859602:96860861:96863847:96864033,	96859603	96860861	96860837	96860837	Frame_Shift_Del	A	-	p.L663fs
UCEC	TCGA-AP-A0LG-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203598	91203598	Frame_Shift_Del	A	-	p.F73fs
UCEC	TCGA-AP-A0LG-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40748100:40748294:40749916:40749989:40753061:40753246,	40749917	40749989	40749921	40749922	Frame_Shift_Ins	-	A	p.Q2259fs
UCEC	TCGA-AP-A0LG-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921002	57921002	Frame_Shift_Del	C	-	p.P692fs
UCEC	TCGA-AP-A0LG-01	AACS	ENST00000441247.2,ENST00000316519.6,ENST00000261686.6,ENST00000316543.10	chr12	125599022:125599103:125603186:125603311:125609250:125609315,	125603187	125603311	125603259	125603260	Frame_Shift_Ins	-	C	p.S357fs
UCEC	TCGA-AP-A0LG-01	ESD	ENST00000378697.1,ENST00000378720.3,ENST00000471867.2,ENST00000412582.1	chr13	47351590:47351758:47354069:47354168:47355630:47355703,	47354070	47354168	47354111	47354112	Frame_Shift_Ins	-	T	p.K186fs
UCEC	TCGA-AP-A0LG-01	MEIS2	ENST00000338564.5,ENST00000219869.9,ENST00000557796.2,ENST00000607277.1,ENST00000560570.1,ENST00000444725.1,ENST00000559085.1,ENST00000397620.2,ENST00000397624.3,ENST00000340545.5,ENST00000382766.2,ENST00000559561.1,ENST00000561208.1,ENST00000424352.2	chr15	37242524:37242601:37329014:37329160:37375971:37376086,	37329015	37329160	37329089	37329090	Frame_Shift_Ins	-	T	p.K275fs
UCEC	TCGA-AP-A0LG-01	MYO9A	ENST00000563542.1,ENST00000424560.1,ENST00000564571.1,ENST00000444904.1,ENST00000356056.5	chr15	72186019:72186119:72189801:72191373:72192027:72192347,	72189802	72191373	72190580	72190580	Frame_Shift_Del	A	-	p.Y1422fs
UCEC	TCGA-AP-A0LG-01	MPPE1	ENST00000592894.1	chr18	11885758:11885815:11886497:11886777:11886915:11887024,	11886498	11886777	11886724	11886725	Frame_Shift_Ins	-	T	p.P244fs
UCEC	TCGA-AP-A0LG-01	MPPE1	ENST00000589731.1,ENST00000399978.2,ENST00000587724.1	chr18	11886497:11886620:11886711:11886780:11886915:11887024,	11886712	11886780	11886724	11886725	Frame_Shift_Ins	-	T	p.P244fs
UCEC	TCGA-AP-A0LG-01	MPPE1	ENST00000592977.1,ENST00000588072.1,ENST00000317251.4,ENST00000496196.1	chr18	11886497:11886620:11886711:11886777:11886915:11887024,	11886712	11886777	11886724	11886725	Frame_Shift_Ins	-	T	p.P244fs
UCEC	TCGA-AP-A0LG-01	CHEK2	ENST00000448511.1	chr22	29107896:29108005:29115382:29115473:29120964:29121112,29107896:29108005:29115382:29115473:29120873:29120911,	29115383	29115473	29115392	29115393	Frame_Shift_Ins	-	T	p.T225fs
UCEC	TCGA-AP-A0LG-01	CASK	ENST00000378166.4,ENST00000378154.1,ENST00000378163.1,ENST00000378158.1,ENST00000361962.4,ENST00000468986.2,ENST00000318588.9,ENST00000477823.1,ENST00000442742.2	chrX	41646430:41646536:41712367:41712480:41782182:41782235,	41712368	41712480	41712416	41712416	Frame_Shift_Del	T	-	p.I42fs
UCEC	TCGA-AP-A0LH-01	LRRIQ3	ENST00000415760.1	chr1	74491924:74492653:74507374:74507617:74540344:74540474,	74507375	74507617	74507390	74507391	Frame_Shift_Ins	-	A	p.F408fs
UCEC	TCGA-AP-A0LH-01	LRRIQ3	ENST00000395089.1,ENST00000354431.4	chr1	74491714:74492653:74506896:74507617:74540344:74540474,	74506897	74507617	74507390	74507391	Frame_Shift_Ins	-	A	p.F408fs
UCEC	TCGA-AP-A0LH-01	TBX15	ENST00000207157.3,ENST00000369429.3	chr1	119466058:119466226:119467268:119467440:119469132:119469234,	119467269	119467440	119467361	119467362	Frame_Shift_Ins	-	A	p.P94fs
UCEC	TCGA-AP-A0LH-01	UBE2Q1	ENST00000497453.1	chr1	154528335:154528440:154530702:154530841:154531383:154531504,	154530703	154530841	154530837	154530838	Frame_Shift_Ins	-	G	p.A64fs
UCEC	TCGA-AP-A0LH-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169796191:169796340:169796851:169796981:169798403:169798590,	169796852	169796981	169796968	169796969	Frame_Shift_Ins	-	A	p.E372fs
UCEC	TCGA-AP-A0LH-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072501	197072502	Frame_Shift_Ins	-	C	p.G1960fs
UCEC	TCGA-AP-A0LH-01	CEP170	ENST00000366542.1,ENST00000521911.1	chr1	243336112:243336148:243349080:243349374:243349560:243349582,	243349081	243349374	243349117	243349118	Frame_Shift_Ins	-	T	p.N510fs
UCEC	TCGA-AP-A0LH-01	ATL2	ENST00000419554.2,ENST00000474535.2,ENST00000378954.4,ENST00000332337.4,ENST00000452935.2	chr2	38545676:38545781:38546026:38546161:38570409:38570557,	38546027	38546161	38546141	38546142	Frame_Shift_Ins	-	C	p.G128fs
UCEC	TCGA-AP-A0LH-01	PLEKHH2	ENST00000282406.4,ENST00000405000.2,ENST00000405223.2	chr2	43924312:43924495:43926785:43927747:43931119:43931195,	43926786	43927747	43927381	43927382	Frame_Shift_Ins	-	C	p.T428fs
UCEC	TCGA-AP-A0LH-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717888	73717889	Frame_Shift_Ins	-	G	p.K2933fs
UCEC	TCGA-AP-A0LH-01	ALMS1	ENST00000484298.1,ENST00000409009.1,ENST00000264448.6	chr2	73682288:73682422:73716760:73718625:73746901:73747143,	73716761	73718625	73717966	73717967	Frame_Shift_Ins	-	C	p.L2959fs
UCEC	TCGA-AP-A0LH-01	CNTNAP5	ENST00000431078.1	chr2	125530375:125530594:125547478:125547718:125555672:125555897,	125547479	125547718	125547548	125547549	Frame_Shift_Ins	-	G	p.M941fs
UCEC	TCGA-AP-A0LH-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168106624	168106625	Frame_Shift_Ins	-	A	p.Q2908fs
UCEC	TCGA-AP-A0LH-01	STT3B	ENST00000295770.2	chr3	31661277:31661322:31663588:31663800:31665165:31665353,	31663589	31663800	31663617	31663618	Frame_Shift_Ins	-	T	p.Y452fs
UCEC	TCGA-AP-A0LH-01	ZNF148	ENST00000492394.1,ENST00000360647.4	chr3	125006946:125007072:125032151:125032500:125042152:125042288,	125032152	125032500	125032279	125032280	Frame_Shift_Ins	-	T	p.M69fs
UCEC	TCGA-AP-A0LH-01	NAALADL2	ENST00000485853.1,ENST00000454872.1	chr3	174577111:174577240:174814579:174815081:174951720:174951994,	174814580	174815081	174814899	174814900	Frame_Shift_Ins	-	T	p.N121fs
UCEC	TCGA-AP-A0LH-01	PACRGL	ENST00000507634.1,ENST00000506702.1,ENST00000467997.2	chr4	20715054:20715162:20728907:20729020:20754187:20754484,	20728908	20729020	20728960	20728961	Frame_Shift_Ins	-	T	p.C248fs
UCEC	TCGA-AP-A0LH-01	ANKRD17	ENST00000558247.1,ENST00000330838.6,ENST00000509867.2,ENST00000358602.4	chr4	73950965:73951163:73956383:73958017:73959795:73959945,	73956384	73958017	73957408	73957409	Frame_Shift_Ins	-	G	p.T1979fs
UCEC	TCGA-AP-A0LH-01	NPR3	ENST00000506712.1,ENST00000509104.1,ENST00000434067.2,ENST00000415167.2,ENST00000415685.2,ENST00000265074.8	chr5	32738969:32739136:32774813:32774949:32780827:32780922,	32774814	32774949	32774938	32774939	Frame_Shift_Ins	-	A	p.R395fs
UCEC	TCGA-AP-A0LH-01	PRLR	ENST00000509140.1,ENST00000397391.3,ENST00000514088.1	chr5	35072676:35072846:35084571:35084741:35089652:35089722,	35084572	35084741	35084688	35084689	Frame_Shift_Ins	-	A	p.C86fs
UCEC	TCGA-AP-A0LH-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984893	36984894	Frame_Shift_Ins	-	G	p.P537fs
UCEC	TCGA-AP-A0LH-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985032	36985033	Frame_Shift_Ins	-	A	p.D584fs
UCEC	TCGA-AP-A0LH-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986127	36986128	Frame_Shift_Ins	-	G	p.R949fs
UCEC	TCGA-AP-A0LH-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986273	36986274	Frame_Shift_Ins	-	G	p.K997fs
UCEC	TCGA-AP-A0LH-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986395	36986396	Frame_Shift_Ins	-	A	p.S1038fs
UCEC	TCGA-AP-A0LH-01	KIF3A	ENST00000403231.1,ENST00000378735.1	chr5	132062045:132062190:132069896:132070170:132073105:132073111,	132069897	132070170	132069982	132069983	Frame_Shift_Ins	-	G	p.T65fs
UCEC	TCGA-AP-A0LH-01	HSPA4	ENST00000304858.2	chr5	132403108:132403249:132406065:132406188:132408921:132409021,	132406066	132406188	132406096	132406097	Frame_Shift_Ins	-	C	p.T113fs
UCEC	TCGA-AP-A0LH-01	SMAD5	ENST00000514641.2,ENST00000545279.1,ENST00000545620.1	chr5	135489280:135489852:135496544:135496796:135498960:135499080,	135496545	135496796	135496638	135496639	Frame_Shift_Ins	-	C	p.H166fs
UCEC	TCGA-AP-A0LH-01	FARS2	ENST00000274680.4,ENST00000324331.6	chr6	5368782:5369415:5404774:5404934:5431273:5431405,	5404775	5404934	5404799	5404800	Frame_Shift_Ins	-	A	p.E213fs
UCEC	TCGA-AP-A0LH-01	LCA5	ENST00000392959.1,ENST00000467898.3,ENST00000369846.4	chr6	80203329:80203467:80222928:80223458:80228421:80228802,	80222929	80223458	80223250	80223251	Frame_Shift_Ins	-	T	p.N133fs
UCEC	TCGA-AP-A0LH-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149699497	149699498	Frame_Shift_Ins	-	A	p.S149fs
UCEC	TCGA-AP-A0LH-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700386	149700387	Frame_Shift_Ins	-	A	p.N445fs
UCEC	TCGA-AP-A0LH-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151674719	151674720	Frame_Shift_Ins	-	G	p.N1731fs
UCEC	TCGA-AP-A0LH-01	PDE1C	ENST00000396193.1	chr7	31920461:31920473:32209396:32209568:32249100:32249151,	32209397	32209568	32209551	32209552	Frame_Shift_Ins	-	G	p.N51fs
UCEC	TCGA-AP-A0LH-01	SEMA3D	ENST00000444867.1	chr7	84710832:84710895:84727120:84727281:84751056:84751107,	84727121	84727281	84727218	84727219	Frame_Shift_Ins	-	T	p.T72fs
UCEC	TCGA-AP-A0LH-01	KAT6A	ENST00000485568.1,ENST00000265713.2,ENST00000406337.1,ENST00000396930.3	chr8	41839356:41839472:41844972:41845081:41905895:41906820,	41844973	41845081	41845005	41845006	Frame_Shift_Ins	-	C	p.E226fs
UCEC	TCGA-AP-A0LH-01	UBQLN1	ENST00000257468.7	chr9	86278789:86278958:86279944:86280060:86284099:86284206,	86279945	86280060	86279959	86279960	Frame_Shift_Ins	-	G	p.P478fs
UCEC	TCGA-AP-A0LH-01	PTBP3	ENST00000334318.6,ENST00000374257.1,ENST00000458258.1,ENST00000343327.2,ENST00000374255.2	chr9	114997099:114997177:115013208:115013383:115014957:115015068,	115013209	115013383	115013286	115013287	Frame_Shift_Ins	-	T	p.S276fs
UCEC	TCGA-AP-A0LH-01	PFKFB3	ENST00000540253.1,ENST00000379782.3,ENST00000379789.4,ENST00000360521.2,ENST00000477914.1,ENST00000461744.1,ENST00000490474.1,ENST00000467491.1,ENST00000379785.1,ENST00000379775.4,ENST00000317350.4	chr10	6263366:6263490:6263603:6263708:6264817:6264947,	6263604	6263708	6263682	6263683	Frame_Shift_Ins	-	A	p.Y353fs
UCEC	TCGA-AP-A0LH-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61828425	61828426	Frame_Shift_Ins	-	G	p.A4071fs
UCEC	TCGA-AP-A0LH-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61834175	61834176	Frame_Shift_Ins	-	C	p.E2155fs
UCEC	TCGA-AP-A0LH-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134219011	134219012	Frame_Shift_Ins	-	G	p.K336fs
UCEC	TCGA-AP-A0LH-01	SLC22A8	ENST00000535878.1,ENST00000545207.1,ENST00000336232.2,ENST00000430500.2	chr11	62760708:62760808:62760895:62761099:62761241:62761350,	62760896	62761099	62760905	62760906	Frame_Shift_Ins	-	G	p.L507fs
UCEC	TCGA-AP-A0LH-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128843039	128843040	Frame_Shift_Ins	-	G	p.F1107fs
UCEC	TCGA-AP-A0LH-01	LRP6	ENST00000543091.1	chr12	12356136:12356334:12397195:12397589:12419614:12419703,	12397196	12397589	12397478	12397479	Frame_Shift_Ins	-	C	p.V56fs
UCEC	TCGA-AP-A0LH-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645888	54645889	Frame_Shift_Ins	-	T	p.S87fs
UCEC	TCGA-AP-A0LH-01	RASSF3	ENST00000542104.1,ENST00000336061.2	chr12	65078566:65078674:65081995:65082233:65085249:65085359,	65081996	65082233	65082000	65082001	Frame_Shift_Ins	-	A	p.S75fs
UCEC	TCGA-AP-A0LH-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450924	85450925	Frame_Shift_Ins	-	A	p.E785fs
UCEC	TCGA-AP-A0LH-01	USPL1	ENST00000255304.4	chr13	31195900:31196029:31204971:31205611:31211880:31211994,	31204972	31205611	31205495	31205496	Frame_Shift_Ins	-	A	p.L251fs
UCEC	TCGA-AP-A0LH-01	DMXL2	ENST00000543779.2,ENST00000449909.3,ENST00000251076.5,ENST00000560891.1	chr15	51758380:51758508:51763419:51763598:51766540:51766789,	51763420	51763598	51763594	51763595	Frame_Shift_Ins	-	G	p.P2406fs
UCEC	TCGA-AP-A0LH-01	CHRNE	ENST00000293780.4,ENST00000572438.1	chr17	4802295:4802402:4802492:4802679:4802762:4802877,	4802493	4802679	4802621	4802622	Frame_Shift_Ins	-	G	p.R364fs
UCEC	TCGA-AP-A0LH-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41243931	41243932	Frame_Shift_Ins	-	C	p.A1206fs
UCEC	TCGA-AP-A0LH-01	POP4	ENST00000590688.1,ENST00000585603.1	chr19	30099563:30099616:30101315:30101539:30102768:30102846,	30101316	30101539	30101493	30101494	Frame_Shift_Ins	-	A	p.Q80fs
UCEC	TCGA-AP-A0LH-01	POP4	ENST00000591824.1	chr19	30099563:30099616:30101226:30101539:30102768:30102846,	30101227	30101539	30101493	30101494	Frame_Shift_Ins	-	A	p.Q80fs
UCEC	TCGA-AP-A0LH-01	CCNE1	ENST00000575243.1	chr19	30303631:30303683:30303884:30303944:30308043:30308189,	30303885	30303944	30303939	30303940	Frame_Shift_Ins	-	G	p.S59fs
UCEC	TCGA-AP-A0LH-01	CCNE1	ENST00000357943.5,ENST00000444983.2,ENST00000262643.3	chr19	30303631:30303683:30303875:30303944:30308043:30308189,	30303876	30303944	30303939	30303940	Frame_Shift_Ins	-	G	p.S59fs
UCEC	TCGA-AP-A0LH-01	CCNE1	ENST00000357943.5,ENST00000444983.2,ENST00000576532.1,ENST00000574121.1,ENST00000262643.3	chr19	30313146:30313258:30313352:30313510:30314561:30314917,	30313353	30313510	30313463	30313464	Frame_Shift_Ins	-	A	p.E355fs
UCEC	TCGA-AP-A0LH-01	URI1	ENST00000542441.2,ENST00000392271.1	chr19	30433424:30433571:30462099:30462134:30471065:30471157,30433460:30433571:30462099:30462134:30476129:30476208,	30462100	30462134	30462101	30462102	Frame_Shift_Ins	-	G	p.V40fs
UCEC	TCGA-AP-A0LH-01	URI1	ENST00000542441.2,ENST00000392271.1	chr19	30433424:30433571:30462099:30462134:30471065:30471157,30433460:30433571:30462099:30462134:30476129:30476208,	30462100	30462134	30462120	30462121	Frame_Shift_Ins	-	A	p.E46fs
UCEC	TCGA-AP-A0LH-01	URI1	ENST00000542441.2,ENST00000574176.1,ENST00000574110.1,ENST00000360605.4,ENST00000392271.1,ENST00000312051.6	chr19	30496557:30496615:30498376:30498545:30499911:30499926,	30498377	30498545	30498411	30498412	Frame_Shift_Ins	-	C	p.K184fs
UCEC	TCGA-AP-A0LH-01	URI1	ENST00000542441.2,ENST00000574110.1,ENST00000360605.4,ENST00000392271.1,ENST00000575242.1,ENST00000312051.6	chr19	30499986:30500260:30502000:30502143:30503191:30503438,	30502001	30502143	30502100	30502101	Frame_Shift_Ins	-	C	p.A379fs
UCEC	TCGA-AP-A0LH-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58461761:58461889:58467044:58467481:58467622:58467756,	58467045	58467481	58467350	58467351	Frame_Shift_Ins	-	T	p.E686fs
UCEC	TCGA-AP-A0LH-01	SYCP2	ENST00000446834.1,ENST00000357552.3,ENST00000371001.2	chr20	58468578:58468648:58470491:58470652:58471483:58471583,	58470492	58470652	58470637	58470638	Frame_Shift_Ins	-	T	p.R507fs
UCEC	TCGA-AP-A0LH-01	ATP7A	ENST00000341514.6,ENST00000343533.5	chrX	77276441:77276576:77284746:77284941:77286897:77287080,	77284747	77284941	77284878	77284879	Frame_Shift_Ins	-	G	p.T1016fs
UCEC	TCGA-AP-A0LH-01	DIAPH2	ENST00000373054.4	chrX	95939710:95940189:95993584:95993761:96013152:96013257,	95993585	95993761	95993739	95993740	Frame_Shift_Ins	-	G	p.L107fs
UCEC	TCGA-AP-A0LH-01	TBC1D8B	ENST00000357242.5,ENST00000310452.2	chrX	106069259:106069467:106070399:106070567:106082537:106082687,	106070400	106070567	106070419	106070420	Frame_Shift_Ins	-	A	p.T352fs
UCEC	TCGA-AP-A0LH-01	MID2	ENST00000262843.6	chrX	107159231:107159359:107160735:107160969:107167572:107167734,	107160736	107160969	107160854	107160855	Frame_Shift_Ins	-	T	p.I440fs
UCEC	TCGA-AP-A0LH-01	MID2	ENST00000443968.2	chrX	107159231:107159359:107160735:107160879:107167572:107167734,	107160736	107160879	107160854	107160855	Frame_Shift_Ins	-	T	p.I440fs
UCEC	TCGA-AP-A0LH-01	PLS3	ENST00000537301.1,ENST00000543070.1,ENST00000481823.1,ENST00000355899.3,ENST00000420625.2,ENST00000539310.1,ENST00000289290.3	chrX	114881869:114881993:114882212:114882337:114883748:114884022,	114882213	114882337	114882326	114882327	Frame_Shift_Ins	-	A	p.H583fs
UCEC	TCGA-AP-A0LH-01	WDR44	ENST00000371822.5	chrX	117521302:117521377:117526594:117527234:117528017:117528148,117512381:117512415:117526594:117527234:117528017:117528148,	117526595	117527234	117527133	117527134	Frame_Shift_Ins	-	C	p.F242fs
UCEC	TCGA-AP-A0LI-01	PUM1	ENST00000524516.1,ENST00000257075.5,ENST00000440538.2,ENST00000426105.2,ENST00000423018.2,ENST00000373747.3	chr1	31501642:31501711:31532050:31532424:31538462:31538523,	31532051	31532424	31532174	31532216	Frame_Shift_Del	CATAGCGTCGTCCTGGGAACGGCCTGCAACTCCTATAGATCCT	-	p.P66fs
UCEC	TCGA-AP-A0LI-01	PUM1	ENST00000526215.1,ENST00000525948.1	chr1	31501642:31501711:31532145:31532424:31538462:31538523,	31532146	31532424	31532174	31532216	Frame_Shift_Del	CATAGCGTCGTCCTGGGAACGGCCTGCAACTCCTATAGATCCT	-	p.P66fs
UCEC	TCGA-AP-A0LL-01	SMG1	ENST00000565324.1,ENST00000446231.2,ENST00000389467.3	chr16	18840607:18841077:18841247:18841437:18841540:18841691,	18841248	18841437	18841330	18841346	Frame_Shift_Del	TAGCACCTGCCGGTGAT	-	p.N3012fs
UCEC	TCGA-AP-A0LO-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.R707fs
UCEC	TCGA-AP-A0LO-01	THAP6	ENST00000311638.3,ENST00000514480.1	chr4	76441981:76442189:76446945:76447071:76465068:76465169,76441981:76442189:76446945:76447071:76452169:76452424,	76446946	76447071	76446991	76446992	Frame_Shift_Ins	-	C	p.T112fs
UCEC	TCGA-AP-A0LO-01	CKAP5	ENST00000354558.3,ENST00000312055.5,ENST00000529230.1,ENST00000415402.1	chr11	46822749:46822854:46829580:46829694:46830949:46831050,	46829581	46829694	46829682	46829683	Frame_Shift_Ins	-	T	p.K292fs
UCEC	TCGA-AP-A0LO-01	TMCO3	ENST00000434316.2	chr13	114174930:114175048:114188359:114188555:114193671:114193797,	114188360	114188555	114188422	114188423	Frame_Shift_Ins	-	GG	p.A469fs
UCEC	TCGA-AP-A0LP-01	SLC9A1	ENST00000374086.3,ENST00000263980.3	chr1	27436019:27436268:27440316:27440777:27480473:27480852,	27440317	27440777	27440668	27440668	Frame_Shift_Del	G	-	p.P154fs
UCEC	TCGA-AP-A0LP-01	PKN2	ENST00000316005.7,ENST00000370513.5,ENST00000370505.3,ENST00000370521.3	chr1	89236034:89236152:89237103:89237249:89237345:89237562,	89237104	89237249	89237219	89237219	Frame_Shift_Del	A	-	p.G246fs
UCEC	TCGA-AP-A0LP-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169497152:169497332:169498845:169499056:169500023:169500260,	169498846	169499056	169499005	169499006	Frame_Shift_Ins	-	T	p.K1753fs
UCEC	TCGA-AP-A0LP-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233697570:233697803:233704558:233704681:233708755:233708906,	233704559	233704681	233704620	233704620	Frame_Shift_Del	C	-	p.T964fs
UCEC	TCGA-AP-A0LP-01	IFRD2	ENST00000429673.2,ENST00000468737.1,ENST00000336089.4,ENST00000436390.1,ENST00000474556.1,ENST00000417626.2,ENST00000484043.1	chr3	50327611:50327725:50327818:50327903:50327990:50328110,	50327819	50327903	50327898	50327898	Frame_Shift_Del	C	-	p.D228fs
UCEC	TCGA-AP-A0LP-01	ACOX2	ENST00000467738.1,ENST00000459701.2,ENST00000302819.5	chr3	58508222:58508328:58510152:58510332:58512192:58512383,	58510153	58510332	58510265	58510266	Frame_Shift_Del	GA	-	p.S471fs
UCEC	TCGA-AP-A0LP-01	EIF2A	ENST00000477551.1,ENST00000465535.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150285983:150286079:150289744:150290316:150293435:150293549,	150289745	150290316	150289745	150289746	Frame_Shift_Ins	-	A	p.P271_splice
UCEC	TCGA-AP-A0LP-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985083	36985083	Frame_Shift_Del	A	-	p.K601fs
UCEC	TCGA-AP-A0LP-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647320	Frame_Shift_Del	A	-	p.K814fs
UCEC	TCGA-AP-A0LP-01	SLC17A1	ENST00000377886.2,ENST00000476801.1,ENST00000427328.1	chr6	25826688:25826861:25830751:25830835:25832221:25832224,	25830752	25830835	25830752	25830753	Frame_Shift_Ins	-	T	p.V12_splice
UCEC	TCGA-AP-A0LP-01	RGL2	ENST00000437840.2,ENST00000483151.1,ENST00000497454.1,ENST00000491168.1,ENST00000471319.1	chr6	33260206:33260321:33260792:33261083:33261189:33261301,	33260793	33261083	33260898	33260898	Frame_Shift_Del	C	-	p.G634fs
UCEC	TCGA-AP-A0LP-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899920	Frame_Shift_Del	A	-	p.K132fs
UCEC	TCGA-AP-A0LP-01	AOAH	ENST00000535891.1,ENST00000258749.5,ENST00000538464.1,ENST00000431169.1	chr7	36561644:36561721:36570023:36570120:36571752:36571812,	36570024	36570120	36570086	36570087	Frame_Shift_Ins	-	T	p.I487fs
UCEC	TCGA-AP-A0LP-01	CHMP7	ENST00000397677.1,ENST00000313219.7	chr8	23104154:23104337:23106722:23106894:23112759:23112878,23104178:23104507:23106722:23106894:23112759:23112878,	23106723	23106894	23106785	23106785	Frame_Shift_Del	G	-	p.W121fs
UCEC	TCGA-AP-A0LP-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.G1862fs
UCEC	TCGA-AP-A0LP-01	USP54	ENST00000497106.1	chr10	75290461:75290593:75296026:75296195:75299201:75299351,	75296027	75296195	75296150	75296151	Frame_Shift_Ins	-	C	p.G340fs
UCEC	TCGA-AP-A0LP-01	SMC3	ENST00000462899.1,ENST00000361804.4	chr10	112328695:112328771:112333464:112333503:112335093:112335161,	112333465	112333503	112333494	112333494	Frame_Shift_Del	T	-	p.F41fs
UCEC	TCGA-AP-A0LP-01	SMPD1	ENST00000531303.1	chr11	6413422:6413426:6414445:6414617:6414846:6414923,6412616:6413386:6414445:6414617:6414846:6414923,6412613:6412733:6414445:6414617:6414846:6414923,	6414446	6414617	6414449	6414450	Frame_Shift_Ins	-	G	p.I365fs
UCEC	TCGA-AP-A0LP-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
UCEC	TCGA-AP-A0LP-01	GANAB	ENST00000529737.1	chr11	62406830:62406939:62407102:62407203:62414033:62414074,	62407103	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
UCEC	TCGA-AP-A0LP-01	GANAB	ENST00000346178.4,ENST00000356638.3	chr11	62406830:62406939:62407098:62407203:62414033:62414074,	62407099	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
UCEC	TCGA-AP-A0LP-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
UCEC	TCGA-AP-A0LP-01	CHD2	ENST00000557381.1,ENST00000556930.1,ENST00000420239.2,ENST00000536619.1,ENST00000556270.1,ENST00000394196.4	chr15	93472259:93472321:93480747:93480855:93482807:93482948,	93480748	93480855	93480819	93480819	Frame_Shift_Del	A	-	p.Q172fs
UCEC	TCGA-AP-A0LP-01	RNF43	ENST00000577716.1,ENST00000584437.1,ENST00000407977.2	chr17	56440886:56440961:56448271:56448394:56492686:56492763,	56448272	56448394	56448298	56448298	Frame_Shift_Del	G	-	p.R117fs
UCEC	TCGA-AP-A0LP-01	USP32	ENST00000592339.1,ENST00000300896.4	chr17	58275620:58275805:58282807:58283019:58284381:58284493,	58282808	58283019	58282809	58282810	Frame_Shift_Ins	-	T	p.M1083_splice
UCEC	TCGA-AP-A0LP-01	SMAD2	ENST00000356825.4,ENST00000586040.1,ENST00000591214.1,ENST00000402690.2,ENST00000262160.6	chr18	45377644:45377698:45391429:45391504:45394693:45394828,	45391430	45391504	45391500	45391501	Frame_Shift_Ins	-	G	p.T220fs
UCEC	TCGA-AP-A0LQ-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023940	64023941	Frame_Shift_Ins	-	T	p.R91fs
UCEC	TCGA-AP-A0LQ-01	SCAPER	ENST00000324767.7,ENST00000538941.2,ENST00000563290.1,ENST00000303521.6	chr15	76914104:76914170:76957993:76958130:76994098:76994206,	76957994	76958130	76958026	76958026	Frame_Shift_Del	T	-	p.K871fs
UCEC	TCGA-AP-A0LT-01	SGIP1	ENST00000371037.4,ENST00000424320.1,ENST00000483060.1	chr1	67098752:67098777:67101626:67101698:67105459:67105516,	67101627	67101698	67101686	67101686	Frame_Shift_Del	A	-	p.G53fs
UCEC	TCGA-AP-A0LT-01	SLAMF9	ENST00000368093.3	chr1	159921281:159921656:159922051:159922324:159923098:159923439,	159922052	159922324	159922139	159922139	Frame_Shift_Del	C	-	p.D193fs
UCEC	TCGA-AP-A0LT-01	NID1	ENST00000264187.6	chr1	236154185:236154358:236156944:236157172:236175220:236175343,	236156945	236157172	236156947	236156947	Frame_Shift_Del	G	-	p.P918fs
UCEC	TCGA-AP-A0LT-01	RTN4	ENST00000405240.1,ENST00000394611.2,ENST00000404909.1,ENST00000357376.3,ENST00000337526.6	chr2	55214626:55214834:55252221:55254621:55255299:55255356,	55252222	55254621	55253228	55253228	Frame_Shift_Del	T	-	p.K669fs
UCEC	TCGA-AP-A0LT-01	UBP1	ENST00000447368.2,ENST00000283628.5,ENST00000456378.1	chr3	33458284:33458326:33467081:33467233:33481227:33481348,	33467082	33467233	33467210	33467210	Frame_Shift_Del	A	-	p.F46fs
UCEC	TCGA-AP-A0LT-01	PLXND1	ENST00000324093.4,ENST00000393239.1	chr3	129285369:129285474:129286334:129286447:129286540:129286648,	129286335	129286447	129286424	129286427	Frame_Shift_Del	TGTC	-	p.D1332fs
UCEC	TCGA-AP-A0LT-01	BCHE	ENST00000497011.1	chr3	165503932:165504099:165547304:165548829:165555101:165555208,	165547305	165548829	165548196	165548196	Frame_Shift_Del	T	-	p.N209fs
UCEC	TCGA-AP-A0LT-01	SH3TC1	ENST00000508641.1,ENST00000539824.1,ENST00000515682.1,ENST00000507891.1,ENST00000245105.3	chr4	8217929:8217984:8218683:8218894:8219997:8220074,	8218684	8218894	8218734	8218734	Frame_Shift_Del	C	-	p.P227fs
UCEC	TCGA-AP-A0LT-01	NSD1	ENST00000347982.4,ENST00000439151.2,ENST00000354179.4	chr5	176631120:176631293:176636636:176639196:176662821:176662946,	176636637	176639196	176638869	176638869	Frame_Shift_Del	A	-	p.K1157fs
UCEC	TCGA-AP-A0LT-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327684	16327684	Frame_Shift_Del	G	-	p.P286fs
UCEC	TCGA-AP-A0LT-01	ITPR3	ENST00000374316.5,ENST00000605930.1	chr6	33644791:33644866:33645280:33645406:33646197:33646320,	33645281	33645406	33645314	33645314	Frame_Shift_Del	G	-	p.G1186fs
UCEC	TCGA-AP-A0LT-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923753	158923753	Frame_Shift_Del	G	-	p.G1020fs
UCEC	TCGA-AP-A0LT-01	CDHR3	ENST00000478080.1,ENST00000317716.9,ENST00000542731.1	chr7	105656372:105656471:105658291:105658518:105660818:105660990,	105658292	105658518	105658505	105658506	Frame_Shift_Ins	-	A	p.T547fs
UCEC	TCGA-AP-A0LT-01	NUP205	ENST00000440390.2,ENST00000462316.1,ENST00000285968.6	chr7	135282147:135282166:135282745:135282955:135285617:135285702,	135282746	135282955	135282800	135282800	Frame_Shift_Del	T	-	p.F707fs
UCEC	TCGA-AP-A0LT-01	SLC7A2	ENST00000004531.10,ENST00000522656.1,ENST00000398090.3,ENST00000470360.1,ENST00000494857.1	chr8	17400826:17401224:17401959:17402115:17406186:17406352,	17401960	17402115	17402081	17402081	Frame_Shift_Del	T	-	p.D206fs
UCEC	TCGA-AP-A0LT-01	LYN	ENST00000520050.1,ENST00000520220.2,ENST00000519728.1	chr8	56860176:56860282:56863017:56863116:56863239:56863307,	56863018	56863116	56863054	56863054	Frame_Shift_Del	A	-	p.T107fs
UCEC	TCGA-AP-A0LT-01	WDR38	ENST00000373574.1	chr9	127618139:127618237:127618518:127618599:127618747:127618879,	127618519	127618599	127618537	127618538	Frame_Shift_Del	CT	-	p.L142fs
UCEC	TCGA-AP-A0LT-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1267994	1267994	Frame_Shift_Del	C	-	p.T3295fs
UCEC	TCGA-AP-A0LT-01	ARFGAP2	ENST00000529455.1	chr11	47193862:47193884:47196732:47196864:47197401:47197474,	47196733	47196864	47196853	47196853	Frame_Shift_Del	A	-	p.F92fs
UCEC	TCGA-AP-A0LT-01	AGBL2	ENST00000357610.3,ENST00000298861.4,ENST00000528609.1,ENST00000525123.1	chr11	47681144:47681898:47684577:47684664:47688507:47688615,	47684578	47684664	47684631	47684631	Frame_Shift_Del	G	-	p.L828fs
UCEC	TCGA-AP-A0LT-01	THYN1	ENST00000392595.2,ENST00000392594.3,ENST00000341541.3	chr11	134118181:134118378:134118702:134118853:134119060:134119156,	134118703	134118853	134118753	134118753	Frame_Shift_Del	T	-	p.N194fs
UCEC	TCGA-AP-A0LT-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577802	14577802	Frame_Shift_Del	A	-	p.E318fs
UCEC	TCGA-AP-A0LT-01	CAPRIN2	ENST00000540584.1	chr12	30904004:30904067:30906277:30906493:30907614:30907787,30904004:30904067:30906277:30906493:30907684:30907822,30904004:30904067:30906277:30906493:30907622:30907794,	30906278	30906493	30906412	30906412	Frame_Shift_Del	C	-	p.E96fs
UCEC	TCGA-AP-A0LT-01	RNFT2	ENST00000319176.7,ENST00000407967.3,ENST00000392549.2,ENST00000257575.4	chr12	117178840:117178899:117187645:117188112:117191788:117191865,	117187646	117188112	117187871	117187871	Frame_Shift_Del	G	-	p.E103fs
UCEC	TCGA-AP-A0LT-01	DIAPH3	ENST00000400319.1,ENST00000377908.2,ENST00000400330.1,ENST00000267215.4,ENST00000400324.4,ENST00000400320.1,ENST00000465066.1	chr13	60348861:60348957:60384921:60385057:60407240:60407403,	60384922	60385057	60385030	60385030	Frame_Shift_Del	T	-	p.R1019fs
UCEC	TCGA-AP-A0LT-01	ASB2	ENST00000555507.1,ENST00000555019.1,ENST00000315988.4	chr14	94404064:94404197:94405453:94406018:94413694:94413866,	94405454	94406018	94405646	94405646	Frame_Shift_Del	G	-	p.P475fs
UCEC	TCGA-AP-A0LT-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174185	105174185	Frame_Shift_Del	C	-	p.S527fs
UCEC	TCGA-AP-A0LT-01	RNF111	ENST00000557998.1,ENST00000348370.4	chr15	59373142:59373483:59376327:59376453:59377857:59377984,	59376328	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
UCEC	TCGA-AP-A0LT-01	RNF111	ENST00000434298.1,ENST00000559209.1,ENST00000561186.1	chr15	59373142:59373483:59376300:59376453:59377857:59377984,	59376301	59376453	59376343	59376343	Frame_Shift_Del	C	-	p.R771fs
UCEC	TCGA-AP-A0LT-01	CIITA	ENST00000571186.1	chr16	10995370:10995415:10995654:10996041:10996514:10996579,	10995655	10996041	10995900	10995900	Frame_Shift_Del	C	-	p.P164fs
UCEC	TCGA-AP-A0LT-01	CIITA	ENST00000324288.8,ENST00000537380.1,ENST00000570546.1	chr16	10995370:10995415:10995894:10996041:10996514:10996579,	10995895	10996041	10995900	10995900	Frame_Shift_Del	C	-	p.P164fs
UCEC	TCGA-AP-A0LT-01	ITGAM	ENST00000287497.8,ENST00000544665.3	chr16	31340548:31340624:31341118:31341226:31341401:31341485,	31341119	31341226	31341205	31341205	Frame_Shift_Del	C	-	p.R986fs
UCEC	TCGA-AP-A0LT-01	CDH16	ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66946406:66946483:66946566:66946794:66947033:66947184,	66946567	66946794	66946742	66946742	Frame_Shift_Del	G	-	p.P369fs
UCEC	TCGA-AP-A0LT-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827804	72827804	Frame_Shift_Del	G	-	p.P2926fs
UCEC	TCGA-AP-A0LT-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.R1893fs
UCEC	TCGA-AP-A0LT-01	COLEC12	ENST00000400256.3	chr18	333006:333143:334741:335230:346294:347341,	334742	335230	335179	335179	Frame_Shift_Del	G	-	p.P460fs
UCEC	TCGA-AP-A0LT-01	DHX34	ENST00000328771.4	chr19	47863224:47863327:47865732:47865950:47870237:47870412,	47865733	47865950	47865895	47865895	Frame_Shift_Del	C	-	p.A513fs
UCEC	TCGA-AP-A0LT-01	NFATC2	ENST00000414705.1,ENST00000609507.1,ENST00000371564.3,ENST00000610033.1	chr20	50007945:50007988:50048603:50049293:50051724:50051851,50015179:50015267:50048603:50049293:50051724:50051851,	50048604	50049293	50048783	50048783	Frame_Shift_Del	G	-	p.P848fs
UCEC	TCGA-AP-A0LT-01	GGT5	ENST00000398292.3,ENST00000418439.2,ENST00000327365.4,ENST00000263112.7	chr22	24621513:24621620:24622043:24622234:24622598:24622717,	24622044	24622234	24622165	24622165	Frame_Shift_Del	C	-	p.D370fs
UCEC	TCGA-AP-A0LT-01	KDELR3	ENST00000216014.4,ENST00000471268.1,ENST00000409006.3	chr22	38870527:38870628:38875597:38875756:38877216:38877469,	38875598	38875756	38875737	38875738	Frame_Shift_Del	AC	-	p.Y111fs
UCEC	TCGA-AP-A0LT-01	PQBP1	ENST00000465859.1	chrX	48759232:48759319:48759495:48759794:48760008:48760070,	48759496	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.R151fs
UCEC	TCGA-AP-A0LT-01	PQBP1	ENST00000443648.1,ENST00000447146.2,ENST00000473764.1,ENST00000396763.1,ENST00000477997.1,ENST00000474671.1,ENST00000376563.1,ENST00000218224.4	chrX	48759232:48759319:48759509:48759794:48760008:48760070,	48759510	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.R151fs
UCEC	TCGA-AP-A0LV-01	LAMB3	ENST00000391911.1,ENST00000367030.3,ENST00000356082.4	chr1	209806414:209806478:209807791:209807983:209811252:209811326,	209807792	209807983	209807794	209807795	Frame_Shift_Ins	-	C	p.G187fs
UCEC	TCGA-AP-A0LV-01	ZNF827	ENST00000379448.4	chr4	146813394:146813567:146823317:146824367:146859516:146859623,	146823318	146824367	146823888	146823888	Frame_Shift_Del	C	-	p.E175fs
UCEC	TCGA-AP-A0LV-01	SPDEF	ENST00000544425.1	chr6	34508760:34508958:34511796:34512261:34523705:34523843,	34511797	34512261	34512172	34512173	Frame_Shift_Ins	-	G	p.P20fs
UCEC	TCGA-AP-A0LV-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832466	24832467	Frame_Shift_Ins	-	C	p.T1423fs
UCEC	TCGA-AP-A0LV-01	SNRNP70	ENST00000598441.1,ENST00000401730.1,ENST00000597936.1,ENST00000595231.1,ENST00000221448.5	chr19	49588751:49588893:49589661:49589818:49593547:49593610,	49589662	49589818	49589711	49589712	Frame_Shift_Ins	-	C	p.A14fs
UCEC	TCGA-AP-A0LV-01	SAMSN1	ENST00000400566.1,ENST00000285670.2	chr21	15884764:15884894:15889212:15889362:15893470:15893542,	15889213	15889362	15889283	15889284	Frame_Shift_Ins	-	T	p.M70fs
UCEC	TCGA-AX-A05S-01	KIF5C	ENST00000414838.2,ENST00000435030.1,ENST00000397413.1,ENST00000482151.1	chr2	149866648:149866865:149868083:149868197:149879591:149880024,	149868084	149868197	149868146	149868146	Frame_Shift_Del	G	-	p.G944fs
UCEC	TCGA-AX-A05S-01	COL4A4	ENST00000329662.7,ENST00000396625.3	chr2	227927245:227927314:227942609:227942793:227945158:227945265,	227942610	227942793	227942735	227942735	Frame_Shift_Del	G	-	p.P621fs
UCEC	TCGA-AX-A05S-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74310709:74310839:74313178:74313393:74315051:74315184,	74313179	74313393	74313372	74313372	Frame_Shift_Del	A	-	p.E346fs
UCEC	TCGA-AX-A05S-01	MTRR	ENST00000510525.1	chr5	7886727:7886816:7889207:7889388:7891484:7891501,7885897:7885967:7889207:7889388:7891484:7891501,	7889208	7889388	7889211	7889211	Frame_Shift_Del	T	-	p.F411fs
UCEC	TCGA-AX-A05S-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647320	Frame_Shift_Del	A	-	p.K814fs
UCEC	TCGA-AX-A05S-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000359028.2,ENST00000356239.3	chr7	91707009:91707189:91708392:91709466:91711835:91711976,	91708393	91709466	91709345	91709345	Frame_Shift_Del	A	-	p.E2633fs
UCEC	TCGA-AX-A05S-01	STAU2	ENST00000523533.1,ENST00000521210.1	chr8	74439925:74440039:74464246:74464554:74495004:74495065,	74464247	74464554	74464283	74464283	Frame_Shift_Del	T	-	p.K498fs
UCEC	TCGA-AX-A05S-01	CA9	ENST00000493245.1,ENST00000378357.4	chr9	35680114:35680136:35680749:35680831:35680961:35681135,	35680750	35680831	35680780	35680780	Frame_Shift_Del	T	-	p.L423fs
UCEC	TCGA-AX-A05S-01	NCBP1	ENST00000375147.3	chr9	100405485:100405642:100407398:100407506:100407892:100408014,	100407399	100407506	100407404	100407404	Frame_Shift_Del	T	-	p.R129fs
UCEC	TCGA-AX-A05S-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
UCEC	TCGA-AX-A05S-01	SMC3	ENST00000462899.1,ENST00000361804.4	chr10	112328695:112328771:112333464:112333503:112335093:112335161,	112333465	112333503	112333494	112333494	Frame_Shift_Del	T	-	p.F41fs
UCEC	TCGA-AX-A05S-01	PYGL	ENST00000532107.1,ENST00000532462.1,ENST00000216392.7,ENST00000544180.2	chr14	51374988:51375055:51375538:51375673:51376612:51376820,	51375539	51375673	51375661	51375661	Frame_Shift_Del	T	-	p.K730fs
UCEC	TCGA-AX-A05S-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75514338	75514338	Frame_Shift_Del	T	-	p.N674fs
UCEC	TCGA-AX-A05S-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000429436.2	chr14	103932050:103932130:103932308:103932428:103932679:103932779,	103932309	103932428	103932313	103932314	Frame_Shift_Ins	-	GA	p.L261fs
UCEC	TCGA-AX-A05S-01	RPS27L	ENST00000439025.1,ENST00000330964.5	chr15	63447819:63447930:63448611:63448720:63449598:63449698,	63448612	63448720	63448669	63448670	Frame_Shift_Del	TA	-	p.H19fs
UCEC	TCGA-AX-A05S-01	CDC27	ENST00000066544.3,ENST00000527547.1,ENST00000533415.1,ENST00000446365.2	chr17	45229179:45229284:45232037:45232152:45234278:45234349,	45232038	45232152	45232039	45232039	Frame_Shift_Del	T	-	p.K319_splice
UCEC	TCGA-AX-A05S-01	CDC27	ENST00000576484.1	chr17	45229179:45229284:45232037:45232230:45234278:45234349,	45232038	45232230	45232039	45232039	Frame_Shift_Del	T	-	p.K319_splice
UCEC	TCGA-AX-A05S-01	SEC14L1	ENST00000430767.4,ENST00000585618.1,ENST00000591786.1,ENST00000589827.1,ENST00000413679.2,ENST00000591437.1,ENST00000588616.2,ENST00000392476.2,ENST00000443798.4,ENST00000431431.2,ENST00000436233.4	chr17	75187269:75187394:75189502:75189631:75190758:75190815,	75189503	75189631	75189591	75189591	Frame_Shift_Del	A	-	p.E145fs
UCEC	TCGA-AX-A05S-01	CREB3L3	ENST00000602257.1,ENST00000598894.1,ENST00000595923.1,ENST00000078445.2	chr19	4164505:4164637:4168347:4168454:4170136:4170205,	4168348	4168454	4168366	4168367	Frame_Shift_Del	AA	-	p.K245fs
UCEC	TCGA-AX-A05S-01	PDCD5	ENST00000590247.2,ENST00000586035.1,ENST00000221784.4,ENST00000586316.1	chr19	33075863:33075917:33077763:33077835:33078158:33078203,33076721:33076813:33077763:33077835:33078158:33078203,	33077764	33077835	33077794	33077794	Frame_Shift_Del	A	-	p.K97fs
UCEC	TCGA-AX-A05S-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000395841.2,ENST00000371242.2	chr20	55943760:55943868:55948530:55948637:55948718:55948794,	55948531	55948637	55948626	55948626	Frame_Shift_Del	C	-	p.N246fs
UCEC	TCGA-AX-A05T-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094331	27094332	Frame_Shift_Ins	-	CT	p.E1013fs
UCEC	TCGA-AX-A05T-01	PTMA	ENST00000409683.1	chr2	232576677:232576693:232577161:232577226:232577513:232577536,	232577162	232577226	232577188	232577189	Frame_Shift_Del	GA	-	p.E84fs
UCEC	TCGA-AX-A05T-01	PTMA	ENST00000466801.1,ENST00000412128.1,ENST00000341369.7,ENST00000409115.3,ENST00000448874.1,ENST00000410064.1,ENST00000481928.1,ENST00000409321.1	chr2	232576677:232576693:232577152:232577226:232577513:232577536,	232577153	232577226	232577188	232577189	Frame_Shift_Del	GA	-	p.E84fs
UCEC	TCGA-AX-A05T-01	GRM3	ENST00000536043.1	chr7	86273705:86274188:86415576:86416432:86468154:86469221,	86415577	86416432	86415681	86415682	Frame_Shift_Ins	-	C	p.V191fs
UCEC	TCGA-AX-A05T-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000398510.3	chr16	53301838:53302038:53307537:53307697:53308124:53308214,	53307538	53307697	53307668	53307669	Frame_Shift_Ins	-	A	p.Y1616fs
UCEC	TCGA-AX-A05T-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645502	67645506	Frame_Shift_Del	AAATT	-	p.K256fs
UCEC	TCGA-AX-A05U-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091465	204091466	Frame_Shift_Ins	-	C	p.R321fs
UCEC	TCGA-AX-A05U-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44249046	44249068	Frame_Shift_Del	TTTACAGGTGCTTGTGGCAGAGC	-	p.A148fs
UCEC	TCGA-AX-A05W-01	SPATS2L	ENST00000409140.3,ENST00000358677.5,ENST00000409385.1,ENST00000409988.3,ENST00000451764.2,ENST00000409718.1,ENST00000409755.3,ENST00000409151.1	chr2	201283972:201284219:201303844:201304051:201305371:201305447,	201303845	201304051	201303934	201303935	Frame_Shift_Ins	-	GGTC	p.W209fs
UCEC	TCGA-AX-A05W-01	GALNT10	ENST00000519544.1,ENST00000425427.2,ENST00000297107.6,ENST00000520647.1	chr5	153709131:153709298:153760007:153760191:153765872:153765990,153755876:153756022:153760007:153760191:153765872:153765990,	153760008	153760191	153760076	153760080	Frame_Shift_Del	CGGTA	-	p.R275fs
UCEC	TCGA-AX-A05W-01	BRPF3	ENST00000357641.6,ENST00000441730.2,ENST00000534400.1,ENST00000441123.1	chr6	36179224:36179337:36181656:36182163:36185693:36185787,	36181657	36182163	36181728	36181729	Frame_Shift_Ins	-	C	p.S852fs
UCEC	TCGA-AX-A05W-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104333286:104333403:104335187:104335325:104335406:104335484,	104335188	104335325	104335315	104335319	Frame_Shift_Del	ATTAC	-	p.D407fs
UCEC	TCGA-AX-A05Y-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-AX-A05Y-01	CHIC2	ENST00000263921.3	chr4	54880003:54880063:54880229:54880286:54915121:54915277,	54880230	54880286	54880236	54880237	Frame_Shift_Ins	-	TATA	p.Y127fs
UCEC	TCGA-AX-A05Y-01	NIPBL	ENST00000282516.8,ENST00000448238.2,ENST00000514335.1	chr5	37059004:37059267:37060945:37061120:37063891:37064080,	37060946	37061120	37061006	37061006	Frame_Shift_Del	A	-	p.R2582fs
UCEC	TCGA-AX-A05Y-01	TNXB	ENST00000375247.2,ENST00000375244.3	chr6	32015510:32015789:32016139:32016427:32017046:32017364,	32016140	32016427	32016386	32016386	Frame_Shift_Del	C	-	p.E3265fs
UCEC	TCGA-AX-A05Y-01	TRIM50	ENST00000333149.2,ENST00000453152.1	chr7	72732820:72733051:72734145:72734241:72738386:72738803,	72734146	72734241	72734195	72734195	Frame_Shift_Del	T	-	p.K149fs
UCEC	TCGA-AX-A05Y-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-AX-A05Y-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-AX-A05Y-01	KIAA2026	ENST00000399933.3,ENST00000381461.2	chr9	5954015:5954095:5968018:5969436:5988344:5988545,	5968019	5969436	5968044	5968044	Frame_Shift_Del	T	-	p.K729fs
UCEC	TCGA-AX-A05Y-01	COL13A1	ENST00000398969.3,ENST00000398978.3,ENST00000398966.3,ENST00000517713.1,ENST00000354547.3,ENST00000398971.3,ENST00000479733.1,ENST00000520267.1,ENST00000522165.1,ENST00000357811.3,ENST00000356340.3,ENST00000398974.3,ENST00000398968.3,ENST00000398964.3,ENST00000398973.3,ENST00000520133.1,ENST00000398972.3	chr10	71682463:71682550:71683557:71683611:71684718:71684763,	71683558	71683611	71683587	71683587	Frame_Shift_Del	C	-	p.G409fs
UCEC	TCGA-AX-A05Y-01	PWP1	ENST00000541166.1,ENST00000547120.1,ENST00000412830.3,ENST00000552760.1	chr12	108086776:108086873:108090250:108090361:108091243:108091355,	108090251	108090361	108090273	108090274	Frame_Shift_Del	TT	-	p.S175fs
UCEC	TCGA-AX-A05Y-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074772	31074772	Frame_Shift_Del	A	-	p.K358fs
UCEC	TCGA-AX-A05Y-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10625510:10625627:10625790:10625904:10626003:10626117,	10625791	10625904	10625845	10625845	Frame_Shift_Del	C	-	p.D725fs
UCEC	TCGA-AX-A05Y-01	NHS	ENST00000398097.3,ENST00000380060.3	chrX	17742418:17742550:17743466:17746448:17746768:17746895,	17743467	17746448	17745879	17745879	Frame_Shift_Del	A	-	p.E1218fs
UCEC	TCGA-AX-A060-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521525	46521525	Frame_Shift_Del	T	-	p.M341fs
UCEC	TCGA-AX-A060-01	LGR6	ENST00000487787.1,ENST00000367278.3,ENST00000439764.2,ENST00000255432.7	chr1	202275995:202276067:202276457:202276529:202278178:202278304,	202276458	202276529	202276494	202276495	Frame_Shift_Ins	-	T	p.P415fs
UCEC	TCGA-AX-A060-01	TMEM206	ENST00000261455.4,ENST00000535273.1	chr1	212538284:212538718:212548534:212548642:212550903:212551048,	212548535	212548642	212548596	212548597	Frame_Shift_Ins	-	T	p.S338fs
UCEC	TCGA-AX-A060-01	NTPCR	ENST00000366628.5,ENST00000490807.1,ENST00000366627.4	chr1	233086587:233086878:233091302:233091465:233092092:233092189,233086385:233086490:233091302:233091465:233092092:233092189,	233091303	233091465	233091310	233091310	Frame_Shift_Del	A	-	p.G14fs
UCEC	TCGA-AX-A060-01	EPAS1	ENST00000263734.3	chr2	46605795:46605906:46607365:46607856:46608734:46608861,	46607366	46607856	46607816	46607816	Frame_Shift_Del	C	-	p.P669fs
UCEC	TCGA-AX-A060-01	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040281	103040281	Frame_Shift_Del	A	-	p.T27fs
UCEC	TCGA-AX-A060-01	EAF2	ENST00000273668.2,ENST00000490477.1,ENST00000451944.2	chr3	121563299:121563394:121573533:121573670:121575857:121576003,	121573534	121573670	121573659	121573659	Frame_Shift_Del	A	-	p.V109fs
UCEC	TCGA-AX-A060-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409fs
UCEC	TCGA-AX-A060-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247869	55247869	Frame_Shift_Del	T	-	p.K529fs
UCEC	TCGA-AX-A060-01	CCDC112	ENST00000506442.1	chr5	114605399:114605495:114606909:114607323:114610912:114611303,114604578:114604697:114606909:114607323:114610912:114611303,	114606910	114607323	114606951	114606951	Frame_Shift_Del	T	-	p.R431fs
UCEC	TCGA-AX-A060-01	TFAP2A	ENST00000497266.1,ENST00000482890.1,ENST00000488193.1,ENST00000379608.3,ENST00000379604.2,ENST00000489805.1,ENST00000379613.3,ENST00000319516.4	chr6	10398920:10398938:10400680:10400822:10402724:10402843,	10400681	10400822	10400699	10400699	Frame_Shift_Del	T	-	p.N336fs
UCEC	TCGA-AX-A060-01	SMAP1	ENST00000370452.3,ENST00000316999.5,ENST00000370455.3	chr6	71508359:71508440:71546643:71546731:71562242:71562367,	71546644	71546731	71546674	71546674	Frame_Shift_Del	A	-	p.K203fs
UCEC	TCGA-AX-A060-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700166	149700167	Frame_Shift_Ins	-	C	p.S372fs
UCEC	TCGA-AX-A060-01	TCP1	ENST00000538530.1	chr6	160206505:160206528:160206931:160207052:160208774:160208934,	160206932	160207052	160207001	160207001	Frame_Shift_Del	T	-	p.N103fs
UCEC	TCGA-AX-A060-01	TCP1	ENST00000420894.2,ENST00000545764.1,ENST00000539948.1,ENST00000392168.2,ENST00000321394.7,ENST00000537390.1	chr6	160206505:160206528:160206931:160207029:160208774:160208903,	160206932	160207029	160207001	160207001	Frame_Shift_Del	T	-	p.N103fs
UCEC	TCGA-AX-A060-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72891845	72891845	Frame_Shift_Del	A	-	p.L649fs
UCEC	TCGA-AX-A060-01	RSBN1L	ENST00000334955.8,ENST00000445288.1	chr7	77365726:77365843:77378740:77379381:77394811:77394949,	77378741	77379381	77379277	77379277	Frame_Shift_Del	T	-	p.F414fs
UCEC	TCGA-AX-A060-01	DPP6	ENST00000332007.3,ENST00000377770.3,ENST00000427557.1,ENST00000404039.1	chr7	154680981:154681054:154681166:154681240:154684043:154684248,	154681167	154681240	154681167	154681167	Frame_Shift_Del	A	-	p.E793_splice
UCEC	TCGA-AX-A060-01	TLE1	ENST00000376472.1,ENST00000376499.3,ENST00000418319.1	chr9	84235368:84235472:84248262:84248279:84249011:84249216,	84248263	84248279	84248275	84248278	Frame_Shift_Del	TCTG	-	p.D203_splice
UCEC	TCGA-AX-A060-01	AMPD3	ENST00000529834.1,ENST00000396553.2,ENST00000529507.1,ENST00000396554.3,ENST00000528723.1,ENST00000444303.2,ENST00000534047.1	chr11	10506452:10506586:10508781:10508911:10514895:10515090,	10508782	10508911	10508881	10508881	Frame_Shift_Del	C	-	p.N312fs
UCEC	TCGA-AX-A060-01	UPF3A	ENST00000484246.1,ENST00000375299.3	chr13	115048380:115048418:115051776:115051875:115051993:115052104,	115051777	115051875	115051841	115051841	Frame_Shift_Del	A	-	p.R162fs
UCEC	TCGA-AX-A060-01	UPF3A	ENST00000493727.1	chr13	115048353:115048418:115051733:115051875:115051993:115052104,	115051734	115051875	115051841	115051841	Frame_Shift_Del	A	-	p.R162fs
UCEC	TCGA-AX-A060-01	DMXL2	ENST00000560421.1,ENST00000543779.2,ENST00000449909.3,ENST00000251076.5	chr15	51856321:51856457:51857284:51857363:51860683:51860755,	51857285	51857363	51857323	51857323	Frame_Shift_Del	A	-	p.L109fs
UCEC	TCGA-AX-A060-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289816	68289817	Frame_Shift_Ins	-	C	p.D217fs
UCEC	TCGA-AX-A060-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289816	68289817	Frame_Shift_Ins	-	C	p.D217fs
UCEC	TCGA-AX-A060-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289816	68289817	Frame_Shift_Ins	-	C	p.D217fs
UCEC	TCGA-AX-A060-01	NLRP2	ENST00000543010.1,ENST00000391721.4,ENST00000339757.7,ENST00000538819.1,ENST00000448584.2,ENST00000427260.2,ENST00000263437.6,ENST00000537859.1	chr19	55501389:55501560:55501869:55502040:55505636:55505807,	55501870	55502040	55501942	55501942	Frame_Shift_Del	G	-	p.L870fs
UCEC	TCGA-AX-A060-01	BACE2	ENST00000328735.6	chr21	42617888:42617990:42622678:42622828:42629084:42629253,42617888:42617990:42622678:42622828:42647297:42647308,	42622679	42622828	42622752	42622755	Frame_Shift_Del	CTTA	-	p.S353fs
UCEC	TCGA-AX-A060-01	DGCR2	ENST00000467659.1,ENST00000537045.1,ENST00000263196.7,ENST00000545799.1,ENST00000389262.4	chr22	19029319:19029472:19035952:19036156:19044498:19044566,	19035953	19036156	19036091	19036091	Frame_Shift_Del	C	-	p.D290fs
UCEC	TCGA-AX-A060-01	USP9X	ENST00000462850.1,ENST00000324545.8,ENST00000378308.2	chrX	41055503:41055612:41055844:41055991:41056616:41056763,	41055845	41055991	41055854	41055855	Frame_Shift_Del	AG	-	p.R1366fs
UCEC	TCGA-AX-A060-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.K109fs
UCEC	TCGA-AX-A062-01	CLASRP	ENST00000585615.1,ENST00000391953.4,ENST00000544944.2,ENST00000221455.3,ENST00000391952.3	chr19	45572323:45572382:45572459:45572506:45573279:45573362,	45572460	45572506	45572491	45572494	Frame_Shift_Del	GCAA	-	p.R620fs
UCEC	TCGA-AX-A064-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27100934	27100934	Frame_Shift_Del	C	-	p.P1406fs
UCEC	TCGA-AX-A064-01	PPOX	ENST00000470607.1,ENST00000479246.1,ENST00000497522.1,ENST00000539753.1,ENST00000544598.1,ENST00000432542.2,ENST00000468968.2,ENST00000367999.4	chr1	161136300:161136462:161136629:161136724:161140409:161140559,161136269:161136401:161136629:161136724:161136889:161137024,161136300:161136462:161136629:161136724:161136889:161137023,	161136630	161136724	161136708	161136708	Frame_Shift_Del	C	-	p.A24fs
UCEC	TCGA-AX-A064-01	GNPAT	ENST00000416000.1,ENST00000366647.4,ENST00000366646.3	chr1	231406503:231406746:231408057:231408137:231409667:231409808,	231408058	231408137	231408094	231408094	Frame_Shift_Del	T	-	p.V520fs
UCEC	TCGA-AX-A064-01	FBXO11	ENST00000403359.3,ENST00000316377.4,ENST00000493962.2,ENST00000402508.1,ENST00000492225.1,ENST00000434523.2	chr2	48049356:48049442:48050281:48050499:48059487:48059590,	48050282	48050499	48050368	48050368	Frame_Shift_Del	T	-	p.K510fs
UCEC	TCGA-AX-A064-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143091422	143091422	Frame_Shift_Del	T	-	p.K1485fs
UCEC	TCGA-AX-A064-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000444733.1	chr7	50544321:50544341:50547484:50547561:50563047:50563115,	50547485	50547561	50547553	50547553	Frame_Shift_Del	T	-	p.K318fs
UCEC	TCGA-AX-A064-01	HR	ENST00000312841.8	chr8	21984998:21985342:21986071:21986723:21987940:21988194,	21986072	21986723	21986496	21986496	Frame_Shift_Del	G	-	p.P63fs
UCEC	TCGA-AX-A064-01	RGS3	ENST00000478599.1,ENST00000462143.1,ENST00000343817.5,ENST00000374140.2,ENST00000350696.5	chr9	116299078:116299198:116345729:116346707:116353612:116353677,	116345730	116346707	116346000	116346000	Frame_Shift_Del	C	-	p.P770fs
UCEC	TCGA-AX-A064-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459254	27459254	Frame_Shift_Del	A	-	p.K456fs
UCEC	TCGA-AX-A064-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.K264fs
UCEC	TCGA-AX-A064-01	TFAP4	ENST00000574639.1,ENST00000204517.6	chr16	4308189:4308250:4310090:4310246:4310455:4310596,	4310091	4310246	4310236	4310236	Frame_Shift_Del	G	-	p.P226fs
UCEC	TCGA-AX-A064-01	KCTD13	ENST00000308768.5	chr16	29916332:29916472:29917813:29918429:29922298:29922494,	29917814	29918429	29918297	29918297	Frame_Shift_Del	C	-	p.E296fs
UCEC	TCGA-AX-A064-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830672	72830672	Frame_Shift_Del	T	-	p.K1970fs
UCEC	TCGA-AX-A064-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.K115fs
UCEC	TCGA-AX-A064-01	LSM14A	ENST00000586157.1	chr19	34699833:34699956:34706500:34706566:34710295:34710478,	34706501	34706566	34706512	34706513	Frame_Shift_Del	AA	-	p.K243fs
UCEC	TCGA-AX-A064-01	FAM83E	ENST00000263266.3	chr19	49104066:49104626:49106750:49107168:49113132:49113257,	49106751	49107168	49107038	49107038	Frame_Shift_Del	G	-	p.Q297fs
UCEC	TCGA-AX-A06B-01	HAVCR2	ENST00000521665.1,ENST00000524219.1,ENST00000307851.4	chr5	156525868:156525912:156531676:156531760:156533637:156533973,	156531677	156531760	156531753	156531754	Frame_Shift_Ins	-	ACGTC	p.V134fs
UCEC	TCGA-AX-A06B-01	SLFN5	ENST00000299977.4	chr17	33587989:33588115:33591201:33591922:33592090:33593379,	33591202	33591922	33591627	33591628	Frame_Shift_Ins	-	C	p.T522fs
UCEC	TCGA-AX-A06H-01	SCP2	ENST00000371514.3,ENST00000478631.2,ENST00000528311.1,ENST00000371509.4,ENST00000407246.2,ENST00000371513.5	chr1	53427174:53427301:53440440:53440504:53442354:53442384,	53440441	53440504	53440445	53440445	Frame_Shift_Del	A	-	p.T176fs
UCEC	TCGA-AX-A06H-01	AMMECR1L	ENST00000272647.5,ENST00000393001.1	chr2	128627027:128627118:128628387:128628502:128628822:128628933,	128628388	128628502	128628474	128628474	Frame_Shift_Del	G	-	p.L183fs
UCEC	TCGA-AX-A06H-01	SLC19A3	ENST00000409456.2	chr2	228564268:228564280:228566884:228567407:228582658:228582715,	228566885	228567407	228566960	228566961	Frame_Shift_Ins	-	A	p.F25fs
UCEC	TCGA-AX-A06H-01	SLC19A3	ENST00000258403.3,ENST00000409287.1	chr2	228564268:228564280:228566884:228567036:228582658:228582715,	228566885	228567036	228566960	228566961	Frame_Shift_Ins	-	A	p.F25fs
UCEC	TCGA-AX-A06H-01	TRIP12	ENST00000283943.5,ENST00000389045.3,ENST00000389044.4	chr2	230659894:230660046:230661306:230661498:230662405:230662547,	230661307	230661498	230661315	230661315	Frame_Shift_Del	A	-	p.S1243fs
UCEC	TCGA-AX-A06H-01	PDCD6IP	ENST00000457054.2,ENST00000307296.3,ENST00000459659.1,ENST00000484478.1	chr3	33863526:33863574:33866678:33866832:33867971:33868031,	33866679	33866832	33866811	33866811	Frame_Shift_Del	T	-	p.F199fs
UCEC	TCGA-AX-A06H-01	ALDH1L1	ENST00000472186.1,ENST00000473607.1,ENST00000273450.3,ENST00000452905.2,ENST00000476245.1,ENST00000393431.2,ENST00000393434.2	chr3	125854377:125854505:125855606:125855726:125856655:125856803,	125855607	125855726	125855665	125855666	Frame_Shift_Ins	-	C	p.E429fs
UCEC	TCGA-AX-A06H-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698177	2698177	Frame_Shift_Del	A	-	p.K1031fs
UCEC	TCGA-AX-A06H-01	SULT1B1	ENST00000310613.3	chr4	70596218:70596399:70599130:70599225:70599855:70599982,	70599131	70599225	70599153	70599153	Frame_Shift_Del	A	-	p.L192fs
UCEC	TCGA-AX-A06H-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32090268	32090268	Frame_Shift_Del	C	-	p.H2238fs
UCEC	TCGA-AX-A06H-01	SLC38A9	ENST00000396865.2,ENST00000511233.1,ENST00000515159.1,ENST00000416547.2,ENST00000505708.1,ENST00000539768.1,ENST00000508124.1,ENST00000515629.1,ENST00000318672.3	chr5	54931371:54931485:54941616:54941723:54945034:54945142,	54941617	54941723	54941671	54941671	Frame_Shift_Del	A	-	p.F371fs
UCEC	TCGA-AX-A06H-01	F12	ENST00000253496.3	chr5	176832735:176832806:176832962:176833062:176836046:176836104,	176832963	176833062	176832986	176832987	Frame_Shift_Ins	-	T	p.K64fs
UCEC	TCGA-AX-A06H-01	SLC22A23	ENST00000380302.4,ENST00000467177.1,ENST00000406686.3,ENST00000485307.1,ENST00000436008.2,ENST00000490273.1	chr6	3298324:3298452:3324067:3324236:3410421:3410576,	3324068	3324236	3324217	3324218	Frame_Shift_Ins	-	G	p.P311fs
UCEC	TCGA-AX-A06H-01	TRDN	ENST00000334268.4,ENST00000398178.3	chr6	123699010:123699043:123702514:123702535:123703262:123703292,	123702515	123702535	123702515	123702515	Frame_Shift_Del	T	-	p.K396_splice
UCEC	TCGA-AX-A06H-01	AGPAT4	ENST00000457520.2,ENST00000366911.5,ENST00000320285.4	chr6	161557286:161557666:161560453:161560652:161567555:161567631,	161560454	161560652	161560589	161560589	Frame_Shift_Del	G	-	p.R303fs
UCEC	TCGA-AX-A06H-01	IL7	ENST00000520215.1	chr8	79648708:79648762:79652236:79652317:79710306:79710443,79648708:79648762:79652236:79652317:79710362:79710443,	79652237	79652317	79652264	79652264	Frame_Shift_Del	A	-	p.F67fs
UCEC	TCGA-AX-A06H-01	TIAL1	ENST00000369092.4,ENST00000489822.1,ENST00000436547.2,ENST00000497671.1	chr10	121341970:121342069:121347663:121347760:121355945:121356007,	121347664	121347760	121347664	121347665	Frame_Shift_Del	CT	-	p.E43_splice
UCEC	TCGA-AX-A06H-01	PAX6	ENST00000419022.1,ENST00000379109.2,ENST00000379123.5,ENST00000241001.8,ENST00000533333.1,ENST00000379111.2,ENST00000470027.2,ENST00000379115.4,ENST00000464174.1,ENST00000379132.3,ENST00000494377.2,ENST00000379107.2,ENST00000379129.2	chr11	31811483:31811567:31812257:31812408:31814985:31815101,	31812258	31812408	31812317	31812317	Frame_Shift_Del	G	-	p.P375fs
UCEC	TCGA-AX-A06H-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920934	57920934	Frame_Shift_Del	C	-	p.A669fs
UCEC	TCGA-AX-A06H-01	BEST3	ENST00000548658.1,ENST00000331471.4,ENST00000330891.5,ENST00000393365.1	chr12	70088149:70088244:70091426:70091593:70092984:70093065,	70091427	70091593	70091533	70091534	Frame_Shift_Ins	-	A	p.F15fs
UCEC	TCGA-AX-A06H-01	MED4	ENST00000258648.2,ENST00000417167.1,ENST00000378586.1	chr13	48657506:48657564:48660417:48660588:48664487:48664554,	48660418	48660588	48660487	48660487	Frame_Shift_Del	T	-	p.K98fs
UCEC	TCGA-AX-A06H-01	GALC	ENST00000544807.2,ENST00000261304.2,ENST00000555000.1,ENST00000393569.2,ENST00000393568.4,ENST00000557316.1	chr14	88407849:88407902:88411896:88412077:88414071:88414222,	88411897	88412077	88412064	88412064	Frame_Shift_Del	A	-	p.F501fs
UCEC	TCGA-AX-A06H-01	BRF1	ENST00000546417.1,ENST00000552127.1,ENST00000546474.1,ENST00000551787.1,ENST00000547562.1,ENST00000379932.4,ENST00000327359.3,ENST00000440513.3,ENST00000379937.2,ENST00000392557.4,ENST00000446501.2,ENST00000549655.1	chr14	105692459:105692498:105692587:105692627:105692970:105693097,	105692588	105692627	105692604	105692604	Frame_Shift_Del	T	-	p.K313fs
UCEC	TCGA-AX-A06H-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967246	64967247	Frame_Shift_Ins	-	A	p.D731fs
UCEC	TCGA-AX-A06H-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67646012	67646013	Frame_Shift_Ins	-	AC	p.N314fs
UCEC	TCGA-AX-A06H-01	CHD3	ENST00000470531.1	chr17	7810670:7810806:7810918:7811020:7811211:7811337,7810670:7810806:7810918:7811020:7811208:7811337,	7810919	7811020	7810943	7810943	Frame_Shift_Del	G	-	p.R1709fs
UCEC	TCGA-AX-A06H-01	AKAP10	ENST00000225737.6,ENST00000572155.1,ENST00000395536.3	chr17	19861756:19861884:19866152:19866335:19871726:19871774,	19866153	19866335	19866305	19866306	Frame_Shift_Ins	-	T	p.S56fs
UCEC	TCGA-AX-A06H-01	NF1	ENST00000358273.4,ENST00000581113.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29654516:29654857:29657313:29657516:29661855:29662049,	29657314	29657516	29657480	29657480	Frame_Shift_Del	T	-	p.F1926fs
UCEC	TCGA-AX-A06H-01	GALK1	ENST00000592494.1	chr17	73754671:73754680:73758784:73759520:73759977:73760086,	73758785	73759520	73759512	73759512	Frame_Shift_Del	G	-	p.L122fs
UCEC	TCGA-AX-A06H-01	FHOD3	ENST00000592128.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34298519:34298678:34310608:34310767:34320618:34320801,	34310609	34310767	34310696	34310696	Frame_Shift_Del	C	-	p.P1169fs
UCEC	TCGA-AX-A06H-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
UCEC	TCGA-AX-A06H-01	HAUS5	ENST00000587439.1,ENST00000379045.2	chr19	36108756:36108814:36108972:36109097:36109470:36109601,	36108973	36109097	36108990	36108990	Frame_Shift_Del	C	-	p.H238fs
UCEC	TCGA-AX-A06H-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A234fs
UCEC	TCGA-AX-A06H-01	VSIG1	ENST00000217957.5,ENST00000415430.3	chrX	107316025:107316062:107316479:107316599:107319306:107319448,	107316480	107316599	107316575	107316575	Frame_Shift_Del	T	-	p.C258fs
UCEC	TCGA-AX-A0IS-01	ZBTB40	ENST00000374651.4,ENST00000375647.4,ENST00000404138.1	chr1	22839416:22839623:22843792:22843957:22846553:22846768,	22843793	22843957	22843917	22843918	Frame_Shift_Ins	-	A	p.R931fs
UCEC	TCGA-AX-A0IS-01	ZNF683	ENST00000349618.3,ENST00000374204.1,ENST00000403843.1,ENST00000436292.1	chr1	26689516:26689645:26691022:26691717:26694083:26694138,	26691023	26691717	26691253	26691254	Frame_Shift_Ins	-	T	p.Q261fs
UCEC	TCGA-AX-A0IS-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056278	27056278	Frame_Shift_Del	A	-	p.Q425fs
UCEC	TCGA-AX-A0IS-01	RRNAD1	ENST00000368216.4	chr1	156703168:156703312:156703800:156704285:156705516:156705592,	156703801	156704285	156704116	156704117	Frame_Shift_Ins	-	C	p.A318fs
UCEC	TCGA-AX-A0IS-01	PLA2G4A	ENST00000367466.3	chr1	186880379:186880521:186901894:186902031:186908139:186908362,	186901895	186902031	186901934	186901935	Frame_Shift_Ins	-	G	p.R200fs
UCEC	TCGA-AX-A0IS-01	BIRC6	ENST00000421745.2	chr2	32692970:32693179:32693504:32693851:32694462:32694682,	32693505	32693851	32693528	32693529	Frame_Shift_Ins	-	G	p.L1935fs
UCEC	TCGA-AX-A0IS-01	FAM161A	ENST00000456262.1	chr2	62063191:62063244:62066555:62067660:62069256:62069495,	62066556	62067660	62067290	62067291	Frame_Shift_Ins	-	C	p.R283fs
UCEC	TCGA-AX-A0IS-01	FAM161A	ENST00000405894.3,ENST00000307507.3	chr2	62063191:62063244:62066555:62067716:62069256:62069495,	62066556	62067716	62067290	62067291	Frame_Shift_Ins	-	C	p.R283fs
UCEC	TCGA-AX-A0IS-01	ANO7	ENST00000402430.3,ENST00000274979.8	chr2	242154219:242154317:242155507:242155653:242157100:242157306,	242155508	242155653	242155580	242155581	Frame_Shift_Ins	-	A	p.A687fs
UCEC	TCGA-AX-A0IS-01	FGB	ENST00000509493.1,ENST00000302068.4	chr4	155490342:155490459:155490665:155490951:155491570:155491951,	155490666	155490951	155490677	155490678	Frame_Shift_Ins	-	T	p.L324fs
UCEC	TCGA-AX-A0IS-01	ZNF608	ENST00000503896.2,ENST00000505686.1,ENST00000513986.1,ENST00000306315.5,ENST00000509799.1	chr5	123985302:123985390:124036706:124036962:124079776:124080060,	124036707	124036962	124036770	124036771	Frame_Shift_Ins	-	A	p.L366fs
UCEC	TCGA-AX-A0IS-01	FARS2	ENST00000274680.4,ENST00000324331.6	chr6	5431273:5431405:5545412:5545573:5613401:5613553,	5545413	5545573	5545436	5545437	Frame_Shift_Ins	-	G	p.W310fs
UCEC	TCGA-AX-A0IS-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000378826.2	chr6	17764385:17765177:17772138:17772290:17773708:17773814,	17772139	17772290	17772211	17772212	Frame_Shift_Ins	-	T	p.K1468fs
UCEC	TCGA-AX-A0IS-01	BAZ1B	ENST00000339594.4,ENST00000404251.1	chr7	72884674:72884813:72891197:72892899:72903523:72903721,	72891198	72892899	72892621	72892622	Frame_Shift_Ins	-	G	p.P390fs
UCEC	TCGA-AX-A0IS-01	ZCWPW1	ENST00000398027.2	chr7	99998716:99998959:100000138:100000199:100001316:100001408,99999511:99999664:100000138:100000199:100001316:100001408,	100000139	100000199	100000146	100000147	Frame_Shift_Ins	-	T	p.K488fs
UCEC	TCGA-AX-A0IS-01	AKR1D1	ENST00000468877.2,ENST00000432161.1,ENST00000242375.3	chr7	137782611:137782689:137790052:137790175:137791353:137791463,	137790053	137790175	137790079	137790080	Frame_Shift_Ins	-	T	p.G161fs
UCEC	TCGA-AX-A0IS-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81411923	81411924	Frame_Shift_Ins	-	AA	p.F389fs
UCEC	TCGA-AX-A0IS-01	TTC17	ENST00000039989.4,ENST00000525135.1	chr11	43469551:43469672:43471631:43471791:43472731:43472815,	43471632	43471791	43471750	43471751	Frame_Shift_Ins	-	G	p.R969fs
UCEC	TCGA-AX-A0IS-01	EHD1	ENST00000359393.2,ENST00000320631.3,ENST00000421510.1	chr11	64622083:64622329:64622793:64622958:64627395:64627517,	64622794	64622958	64622811	64622812	Frame_Shift_Ins	-	C	p.P368fs
UCEC	TCGA-AX-A0IS-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95662834:95663031:95669174:95670800:95675731:95675814,	95669175	95670800	95669799	95669800	Frame_Shift_Del	AT	-	p.H629fs
UCEC	TCGA-AX-A0IS-01	WDR90	ENST00000549091.1,ENST00000548844.1,ENST00000552728.1,ENST00000547407.1,ENST00000293879.4,ENST00000552683.1,ENST00000546516.1,ENST00000552943.1	chr16	708895:709011:709085:709126:709244:709376,	709086	709126	709105	709106	Frame_Shift_Ins	-	C	p.A1011fs
UCEC	TCGA-AX-A0IS-01	PDXDC1	ENST00000563679.1,ENST00000450288.2,ENST00000535621.2,ENST00000569715.1,ENST00000447912.2,ENST00000325823.7,ENST00000570001.1,ENST00000396410.4	chr16	15100250:15100440:15102635:15102704:15103537:15103616,	15102636	15102704	15102641	15102642	Frame_Shift_Ins	-	T	p.G195fs
UCEC	TCGA-AX-A0IS-01	MYO1D	ENST00000579584.1,ENST00000394649.4,ENST00000318217.5,ENST00000584232.1	chr17	31075953:31076024:31082509:31082680:31087307:31087414,	31082510	31082680	31082518	31082519	Frame_Shift_Ins	-	G	p.S486fs
UCEC	TCGA-AX-A0IS-01	CDC27	ENST00000066544.3,ENST00000526866.1,ENST00000575483.1,ENST00000527547.1,ENST00000533415.1,ENST00000525495.2,ENST00000446365.2,ENST00000531206.1,ENST00000528748.1,ENST00000532575.1,ENST00000573550.1	chr17	45234595:45234750:45235571:45235669:45247282:45247343,	45235572	45235669	45235652	45235653	Frame_Shift_Ins	-	A	p.A132fs
UCEC	TCGA-AX-A0IS-01	JAK3	ENST00000527031.1,ENST00000534444.1,ENST00000458235.1,ENST00000526008.1,ENST00000527670.1	chr19	17954188:17954300:17954585:17954709:17955042:17955187,	17954586	17954709	17954641	17954642	Frame_Shift_Ins	-	CC	p.P84fs
UCEC	TCGA-AX-A0IS-01	CA5B	ENST00000318636.3	chrX	15756432:15756475:15768093:15768288:15782700:15782788,	15768094	15768288	15768282	15768283	Frame_Shift_Ins	-	G	p.R46fs
UCEC	TCGA-AX-A0IU-01	RASA1	ENST00000456692.2,ENST00000274376.6,ENST00000506290.1,ENST00000512763.1,ENST00000509953.1	chr5	86658367:86658488:86659164:86659321:86665629:86665717,	86659165	86659321	86659240	86659240	Frame_Shift_Del	A	-	p.E510fs
UCEC	TCGA-AX-A0IU-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577105	7577106	Frame_Shift_Ins	-	GA	p.P278fs
UCEC	TCGA-AX-A0IW-01	HMGCL	ENST00000235958.4,ENST00000436439.2,ENST00000374487.2,ENST00000374490.3,ENST00000374483.4	chr1	24128399:24129054:24130889:24131015:24134624:24134705,	24130890	24131015	24130916	24130923	Frame_Shift_Del	TGTAGACC	-	p.L281fs
UCEC	TCGA-AX-A0IW-01	RAB11FIP1	ENST00000524118.1,ENST00000522727.1,ENST00000287263.4	chr8	37727937:37728046:37732032:37732840:37734626:37735069,	37732033	37732840	37732246	37732247	Frame_Shift_Ins	-	C	p.V470fs
UCEC	TCGA-AX-A0IW-01	SLC16A6	ENST00000327268.4,ENST00000580666.1	chr17	66268779:66268908:66270067:66270211:66274229:66274427,	66270068	66270211	66270149	66270150	Frame_Shift_Ins	-	C	p.G98fs
UCEC	TCGA-AX-A1C8-01	GRB7	ENST00000394204.1,ENST00000309185.3,ENST00000309156.4,ENST00000394209.2,ENST00000394211.3,ENST00000445327.2	chr17	37901138:37901237:37901495:37901576:37901674:37901791,	37901496	37901576	37901530	37901531	Frame_Shift_Del	CA	-	p.A349fs
UCEC	TCGA-B5-A0JN-01	REV1	ENST00000393445.3,ENST00000258428.3,ENST00000465835.1,ENST00000413697.1	chr2	100029192:100029413:100035289:100035409:100037960:100038115,	100035290	100035409	100035320	100035321	Frame_Shift_Ins	-	A	p.F640fs
UCEC	TCGA-B5-A0JN-01	TRAF3IP2	ENST00000532708.1,ENST00000392556.4,ENST00000340026.6	chr6	111901399:111901592:111912460:111913297:111926978:111927073,111901399:111901592:111912460:111913297:111922398:111922509,	111912461	111913297	111913270	111913270	Frame_Shift_Del	A	-	p.V7fs
UCEC	TCGA-B5-A0JR-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-B5-A0JR-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101268	27101268	Frame_Shift_Del	C	-	p.A1517fs
UCEC	TCGA-B5-A0JR-01	KIAA0319L	ENST00000485551.1,ENST00000325722.3,ENST00000373266.4,ENST00000426982.2	chr1	35908506:35908629:35909761:35909904:35913773:35913800,	35909762	35909904	35909885	35909886	Frame_Shift_Ins	-	A	p.F844fs
UCEC	TCGA-B5-A0JR-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240370840	240370840	Frame_Shift_Del	C	-	p.P914fs
UCEC	TCGA-B5-A0JR-01	NLRP3	ENST00000336119.3,ENST00000366497.2,ENST00000391828.3,ENST00000366496.2	chr1	247587148:247588901:247592886:247593057:247597404:247597575,	247592887	247593057	247592930	247592930	Frame_Shift_Del	T	-	p.F734fs
UCEC	TCGA-B5-A0JR-01	GKN2	ENST00000328895.4,ENST00000481498.1	chr2	69174278:69174389:69177257:69177395:69177833:69177887,	69177258	69177395	69177322	69177323	Frame_Shift_Del	TT	-	p.N47fs
UCEC	TCGA-B5-A0JR-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763921	74763921	Frame_Shift_Del	G	-	p.P276fs
UCEC	TCGA-B5-A0JR-01	PLXNB1	ENST00000296440.6,ENST00000358536.4	chr3	48460652:48460775:48460985:48461666:48462073:48462182,	48460986	48461666	48461600	48461601	Frame_Shift_Ins	-	G	p.P698fs
UCEC	TCGA-B5-A0JR-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823494	114823494	Frame_Shift_Del	T	-	p.K579fs
UCEC	TCGA-B5-A0JR-01	SCLT1	ENST00000511426.1,ENST00000503401.1	chr4	129960195:129960251:129964549:129964622:129965147:129965206,129960384:129961367:129964549:129964622:129965147:129965206,	129964550	129964622	129964617	129964617	Frame_Shift_Del	A	-	p.L56fs
UCEC	TCGA-B5-A0JR-01	TRIO	ENST00000537187.1,ENST00000513206.1,ENST00000515144.1,ENST00000344204.4,ENST00000512070.2	chr5	14474120:14474206:14477002:14477072:14479369:14479459,	14477003	14477072	14477004	14477004	Frame_Shift_Del	T	-	p.D2028_splice
UCEC	TCGA-B5-A0JR-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766233	70766233	Frame_Shift_Del	T	-	p.F311fs
UCEC	TCGA-B5-A0JR-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627690	137627690	Frame_Shift_Del	T	-	p.K322fs
UCEC	TCGA-B5-A0JR-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143095887	143095887	Frame_Shift_Del	C	-	p.G381fs
UCEC	TCGA-B5-A0JR-01	CHMP7	ENST00000397677.1,ENST00000313219.7	chr8	23104154:23104337:23106722:23106894:23112759:23112878,23104178:23104507:23106722:23106894:23112759:23112878,	23106723	23106894	23106785	23106785	Frame_Shift_Del	G	-	p.W121fs
UCEC	TCGA-B5-A0JR-01	RUSC2	ENST00000455600.1	chr9	35538976:35539105:35546426:35548532:35555056:35555698,	35546427	35548532	35548266	35548266	Frame_Shift_Del	G	-	p.R583fs
UCEC	TCGA-B5-A0JR-01	TEX10	ENST00000374902.4	chr9	103108975:103109688:103111465:103111654:103115053:103115165,	103111466	103111654	103111633	103111633	Frame_Shift_Del	T	-	p.R5fs
UCEC	TCGA-B5-A0JR-01	NEK6	ENST00000447379.1,ENST00000545174.1,ENST00000423785.1,ENST00000373603.1,ENST00000444973.1,ENST00000394199.2,ENST00000546191.1,ENST00000373600.3,ENST00000540326.1,ENST00000425237.1,ENST00000539416.1,ENST00000422297.1,ENST00000320246.5,ENST00000373596.1	chr9	127076201:127076264:127083737:127083848:127088608:127088684,	127083738	127083848	127083824	127083825	Frame_Shift_Ins	-	T	p.A161fs
UCEC	TCGA-B5-A0JR-01	MAT1A	ENST00000372213.3	chr10	82040435:82040548:82043671:82043794:82045267:82045340,	82043672	82043794	82043759	82043760	Frame_Shift_Del	CA	-	p.C68fs
UCEC	TCGA-B5-A0JR-01	NAP1L4	ENST00000399614.2	chr11	2997253:2997353:2999513:2999572:3000436:3000467,2997253:2997353:2999513:2999572:3013483:3013518,	2999514	2999572	2999528	2999528	Frame_Shift_Del	T	-	p.N20fs
UCEC	TCGA-B5-A0JR-01	PIK3C2A	ENST00000533645.1	chr11	17177072:17177176:17190223:17191353:17229394:17229467,	17190224	17191353	17190949	17190949	Frame_Shift_Del	T	-	p.T114fs
UCEC	TCGA-B5-A0JR-01	SLC22A9	ENST00000279178.3,ENST00000536333.1,ENST00000310969.4	chr11	63143116:63143240:63149630:63149749:63173968:63174183,	63149631	63149749	63149668	63149669	Frame_Shift_Ins	-	A	p.A331fs
UCEC	TCGA-B5-A0JR-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.R284fs
UCEC	TCGA-B5-A0JR-01	KIAA0586	ENST00000556134.1	chr14	58894119:58894355:58894989:58895181:58896080:58896151,	58894990	58895181	58895012	58895013	Frame_Shift_Ins	-	A	p.K22fs
UCEC	TCGA-B5-A0JR-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662949	95662949	Frame_Shift_Del	T	-	p.K865fs
UCEC	TCGA-B5-A0JR-01	HCFC1R1	ENST00000574151.1	chr16	3072918:3072999:3073233:3073362:3073474:3073531,3072918:3072999:3073233:3073362:3073847:3073962,	3073234	3073362	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
UCEC	TCGA-B5-A0JR-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
UCEC	TCGA-B5-A0JR-01	HCFC1R1	ENST00000573095.1	chr16	3072918:3072999:3073233:3073531:3073847:3073962,	3073234	3073531	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
UCEC	TCGA-B5-A0JR-01	HCFC1R1	ENST00000354679.3	chr16	3072918:3072999:3073233:3073413:3073847:3073962,	3073234	3073413	3073266	3073266	Frame_Shift_Del	G	-	p.P83fs
UCEC	TCGA-B5-A0JR-01	RBL2	ENST00000544405.2,ENST00000561512.1,ENST00000379935.4,ENST00000544545.1,ENST00000262133.6	chr16	53495680:53495762:53496463:53496567:53498137:53498275,	53496464	53496567	53496538	53496539	Frame_Shift_Ins	-	A	p.Q511fs
UCEC	TCGA-B5-A0JR-01	CDH3	ENST00000568292.1,ENST00000264012.4,ENST00000581171.1,ENST00000567674.1,ENST00000542274.1,ENST00000429102.2	chr16	68725748:68725829:68729157:68729288:68729679:68729826,	68729158	68729288	68729267	68729267	Frame_Shift_Del	G	-	p.E704fs
UCEC	TCGA-B5-A0JR-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
UCEC	TCGA-B5-A0JR-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128959	46128959	Frame_Shift_Del	C	-	p.A160fs
UCEC	TCGA-B5-A0JR-01	ERN1	ENST00000433197.3	chr17	62142568:62142647:62144030:62144292:62145549:62145651,	62144031	62144292	62144059	62144060	Frame_Shift_Ins	-	G	p.P271fs
UCEC	TCGA-B5-A0JR-01	MEGF8	ENST00000251268.6,ENST00000334370.4	chr19	42837756:42837920:42838158:42838365:42839186:42839367,	42838159	42838365	42838297	42838298	Frame_Shift_Ins	-	G	p.W164fs
UCEC	TCGA-B5-A0JR-01	RASIP1	ENST00000222145.4	chr19	49230649:49230687:49232193:49232847:49238452:49238808,	49232194	49232847	49232773	49232773	Frame_Shift_Del	C	-	p.G418fs
UCEC	TCGA-B5-A0JR-01	RPS6KA3	ENST00000379548.4,ENST00000438357.1,ENST00000540702.1,ENST00000457145.1,ENST00000544447.1,ENST00000379565.3,ENST00000492128.1	chrX	20213182:20213263:20222139:20222221:20227405:20227522,	20222140	20222221	20222141	20222141	Frame_Shift_Del	T	-	p.V109_splice
UCEC	TCGA-B5-A0JR-01	IRAK1	ENST00000369980.3,ENST00000369973.3	chrX	153277309:153277368:153278493:153278884:153279492:153279555,153278035:153278129:153278493:153278884:153281482:153281524,153278035:153278129:153278493:153278884:153279492:153279555,	153278494	153278884	153278841	153278842	Frame_Shift_Ins	-	C	p.V528fs
UCEC	TCGA-B5-A0JS-01	KDM3B	ENST00000510866.1,ENST00000394866.1,ENST00000314358.5	chr5	137722265:137722310:137726701:137727950:137728859:137729061,	137726702	137727950	137727125	137727125	Frame_Shift_Del	A	-	p.T602fs
UCEC	TCGA-B5-A0JV-01	RCC1	ENST00000373833.6,ENST00000430407.1,ENST00000398958.2,ENST00000373831.3,ENST00000411533.1,ENST00000373832.1	chr1	28861769:28861892:28862382:28862538:28862773:28862805,	28862383	28862538	28862422	28862422	Frame_Shift_Del	G	-	p.R234fs
UCEC	TCGA-B5-A0JV-01	PARD3B	ENST00000462231.1,ENST00000351153.1,ENST00000406610.2,ENST00000349953.3	chr2	205990332:205990461:206023445:206023631:206036934:206037105,	206023446	206023631	206023469	206023470	Frame_Shift_Ins	-	CT	p.A486fs
UCEC	TCGA-B5-A0JV-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000507620.1	chr3	142215975:142216034:142217438:142217616:142218468:142218560,	142217439	142217616	142217557	142217557	Frame_Shift_Del	T	-	p.R1814fs
UCEC	TCGA-B5-A0JV-01	FBXO24	ENST00000241071.6,ENST00000468962.1,ENST00000488079.1,ENST00000427939.2	chr7	100192005:100192164:100192724:100192846:100193197:100193244,	100192725	100192846	100192729	100192729	Frame_Shift_Del	G	-	p.Q357fs
UCEC	TCGA-B5-A0JV-01	MCPH1	ENST00000344683.5	chr8	6299587:6299677:6301913:6303068:6312663:6312773,	6301914	6303068	6302638	6302639	Frame_Shift_Ins	-	A	p.G465fs
UCEC	TCGA-B5-A0JV-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96028685:96028793:96030242:96030359:96033318:96033477,	96030243	96030359	96030338	96030338	Frame_Shift_Del	A	-	p.R1495fs
UCEC	TCGA-B5-A0JV-01	LUZP2	ENST00000336930.6,ENST00000533227.1	chr11	24759766:24759848:24784791:24784854:24927536:24927599,	24784792	24784854	24784797	24784797	Frame_Shift_Del	T	-	p.N113fs
UCEC	TCGA-B5-A0JV-01	ARHGEF17	ENST00000263674.3	chr11	73075258:73075284:73075496:73075645:73076434:73076609,	73075497	73075645	73075510	73075510	Frame_Shift_Del	C	-	p.D1805fs
UCEC	TCGA-B5-A0JV-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4,ENST00000533690.1	chr11	108175401:108175579:108178623:108178711:108180886:108181042,	108178624	108178711	108178655	108178656	Frame_Shift_Ins	-	A	p.D1902fs
UCEC	TCGA-B5-A0JV-01	KLRF1	ENST00000279544.3	chr12	9984911:9985010:9985898:9986048:9994407:9994550,	9985899	9986048	9985925	9985926	Frame_Shift_Ins	-	A	p.Q71fs
UCEC	TCGA-B5-A0JV-01	NLRC5	ENST00000534927.1,ENST00000262510.6,ENST00000540182.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57111207:57111291:57111630:57111714:57111854:57111932,	57111631	57111714	57111676	57111677	Frame_Shift_Del	AG	-	p.A1655fs
UCEC	TCGA-B5-A0JV-01	RINL	ENST00000598904.1,ENST00000591812.1,ENST00000340740.3	chr19	39361209:39361632:39361717:39361867:39362286:39362351,	39361718	39361867	39361773	39361773	Frame_Shift_Del	C	-	p.G182fs
UCEC	TCGA-B5-A0JV-01	FERMT1	ENST00000217289.4,ENST00000478194.1,ENST00000536936.1	chr20	6056668:6057993:6060082:6060224:6064686:6064811,	6060083	6060224	6060206	6060206	Frame_Shift_Del	T	-	p.K579fs
UCEC	TCGA-B5-A0JV-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300311	18300311	Frame_Shift_Del	G	-	p.R1706fs
UCEC	TCGA-B5-A0JZ-01	EXOSC10	ENST00000544779.1,ENST00000304457.7,ENST00000376936.4	chr1	11148179:11148255:11150610:11150725:11151070:11151236,	11150611	11150725	11150665	11150665	Frame_Shift_Del	G	-	p.P235fs
UCEC	TCGA-B5-A0JZ-01	RPA2	ENST00000313433.7,ENST00000444045.1,ENST00000373909.3,ENST00000373912.3	chr1	28223515:28223632:28224143:28224218:28233438:28233552,	28224144	28224218	28224195	28224196	Frame_Shift_Del	CA	-	p.V119fs
UCEC	TCGA-B5-A0JZ-01	AKR1A1	ENST00000473038.1,ENST00000351829.4,ENST00000475919.1,ENST00000495913.1,ENST00000497973.1,ENST00000372070.3	chr1	46034605:46034671:46034814:46034901:46035562:46035716,	46034815	46034901	46034869	46034869	Frame_Shift_Del	A	-	p.K294fs
UCEC	TCGA-B5-A0JZ-01	AMPD1	ENST00000520113.2,ENST00000353928.6,ENST00000369538.3	chr1	115222309:115222329:115222879:115223099:115226819:115226985,	115222880	115223099	115222907	115222907	Frame_Shift_Del	A	-	p.L280fs
UCEC	TCGA-B5-A0JZ-01	DENND4B	ENST00000368646.2,ENST00000361217.4	chr1	153914526:153914589:153914662:153914832:153915031:153915101,	153914663	153914832	153914679	153914679	Frame_Shift_Del	C	-	p.G265fs
UCEC	TCGA-B5-A0JZ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197070732	197070732	Frame_Shift_Del	A	-	p.L2550fs
UCEC	TCGA-B5-A0JZ-01	ARID4B	ENST00000474953.1,ENST00000366603.2,ENST00000349213.3,ENST00000264183.3	chr1	235338498:235338714:235341114:235341228:235344899:235345180,	235341115	235341228	235341129	235341129	Frame_Shift_Del	T	-	p.K1145fs
UCEC	TCGA-B5-A0JZ-01	ATAD2B	ENST00000238789.5	chr2	24056788:24056948:24080284:24080373:24086250:24086425,	24080285	24080373	24080341	24080341	Frame_Shift_Del	A	-	p.F504fs
UCEC	TCGA-B5-A0JZ-01	SYNPR	ENST00000478300.1	chr3	63264352:63264418:63466507:63466632:63542218:63542417,	63466508	63466632	63466509	63466509	Frame_Shift_Del	T	-	p.L29_splice
UCEC	TCGA-B5-A0JZ-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5757990:5758089:5785278:5785491:5795334:5795444,	5785279	5785491	5785361	5785362	Frame_Shift_Ins	-	C	p.L549fs
UCEC	TCGA-B5-A0JZ-01	CCDC158	ENST00000434846.2,ENST00000388914.3	chr4	77304814:77304891:77305240:77305568:77305708:77305818,	77305241	77305568	77305356	77305357	Frame_Shift_Ins	-	T	p.I204fs
UCEC	TCGA-B5-A0JZ-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589583	67589586	Frame_Shift_Del	TACA	-	p.L449fs
UCEC	TCGA-B5-A0JZ-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589590	67589593	Frame_Shift_Del	ATAT	-	p.E451fs
UCEC	TCGA-B5-A0JZ-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589598	67589604	Frame_Shift_Del	CTCAGTT	-	p.T454fs
UCEC	TCGA-B5-A0JZ-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589630	67589646	Frame_Shift_Del	AGATTATATGAAGAATA	-	p.R465fs
UCEC	TCGA-B5-A0JZ-01	CANX	ENST00000247461.4,ENST00000514032.1,ENST00000415618.2,ENST00000504734.1,ENST00000512607.2,ENST00000452673.2	chr5	179147404:179147561:179149804:179150020:179150660:179150780,	179149805	179150020	179149920	179149920	Frame_Shift_Del	T	-	p.I468fs
UCEC	TCGA-B5-A0JZ-01	TCP1	ENST00000544255.1,ENST00000392168.2,ENST00000321394.7	chr6	160200016:160200293:160200926:160201119:160201474:160201598,160200658:160200822:160200926:160201119:160201474:160201598,	160200927	160201119	160200978	160200979	Frame_Shift_Ins	-	C	p.G413fs
UCEC	TCGA-B5-A0JZ-01	VPS41	ENST00000395969.2,ENST00000310301.4	chr7	38807136:38807198:38810797:38810854:38812121:38812237,	38810798	38810854	38810820	38810820	Frame_Shift_Del	T	-	p.N388fs
UCEC	TCGA-B5-A0JZ-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856126	100856126	Frame_Shift_Del	C	-	p.G292fs
UCEC	TCGA-B5-A0JZ-01	EPHA1	ENST00000275815.3	chr7	143095413:143095541:143095693:143096038:143096350:143096506,	143095694	143096038	143095887	143095887	Frame_Shift_Del	C	-	p.G381fs
UCEC	TCGA-B5-A0JZ-01	IMPA1	ENST00000449740.2,ENST00000522997.1,ENST00000523942.1,ENST00000256108.5,ENST00000519816.1,ENST00000519964.1,ENST00000311489.4	chr8	82588468:82588514:82591360:82591465:82592884:82593018,	82591361	82591465	82591428	82591428	Frame_Shift_Del	T	-	p.S79fs
UCEC	TCGA-B5-A0JZ-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-B5-A0JZ-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-B5-A0JZ-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965544	123965545	Frame_Shift_Ins	-	A	p.G598fs
UCEC	TCGA-B5-A0JZ-01	GRINA	ENST00000395068.4	chr8	145064250:145064479:145065367:145065770:145065859:145065972,145064267:145064367:145065367:145065770:145065859:145065972,	145065368	145065770	145065457	145065457	Frame_Shift_Del	G	-	p.P22fs
UCEC	TCGA-B5-A0JZ-01	DOCK8	ENST00000432829.2,ENST00000453981.1,ENST00000469391.1,ENST00000495184.1,ENST00000382329.1	chr9	399145:399259:404917:405073:406929:407069,	404918	405073	405015	405015	Frame_Shift_Del	T	-	p.L1111fs
UCEC	TCGA-B5-A0JZ-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135203113	135203113	Frame_Shift_Del	T	-	p.K1291fs
UCEC	TCGA-B5-A0JZ-01	VIM	ENST00000487938.1,ENST00000544301.1,ENST00000224237.5	chr10	17271289:17271984:17272648:17272709:17275585:17275681,	17272649	17272709	17272668	17272669	Frame_Shift_Ins	-	AG	p.Q195fs
UCEC	TCGA-B5-A0JZ-01	ITGB1	ENST00000423113.1,ENST00000374956.4,ENST00000302278.3,ENST00000396033.2	chr10	33197295:33197462:33199150:33199383:33200375:33200598,	33199151	33199383	33199344	33199345	Frame_Shift_Ins	-	T	p.K657fs
UCEC	TCGA-B5-A0JZ-01	GFRA1	ENST00000544592.1,ENST00000369234.4,ENST00000355422.6,ENST00000439649.3,ENST00000369236.1	chr10	117853212:117853347:117856165:117856275:117884731:117885068,	117856166	117856275	117856253	117856254	Frame_Shift_Ins	-	A	p.F264fs
UCEC	TCGA-B5-A0JZ-01	SLC22A6	ENST00000377871.3,ENST00000360421.4,ENST00000421062.2,ENST00000537349.1,ENST00000458333.2,ENST00000540654.1	chr11	62748731:62748855:62749313:62749482:62751008:62751163,	62749314	62749482	62749334	62749334	Frame_Shift_Del	A	-	p.F259fs
UCEC	TCGA-B5-A0JZ-01	PICALM	ENST00000532317.1,ENST00000525162.1,ENST00000356360.5,ENST00000528256.1,ENST00000526033.1,ENST00000528398.1,ENST00000531930.1,ENST00000393346.3	chr11	85733420:85733512:85737333:85737409:85742510:85742653,	85737334	85737409	85737353	85737354	Frame_Shift_Ins	-	A	p.L110fs
UCEC	TCGA-B5-A0JZ-01	ARHGEF12	ENST00000356641.3	chr11	120207945:120207984:120276826:120276850:120278446:120278532,	120276827	120276850	120276836	120276837	Frame_Shift_Ins	-	A	p.L14fs
UCEC	TCGA-B5-A0JZ-01	CCT2	ENST00000299300.6,ENST00000544368.2,ENST00000550010.1,ENST00000543146.2,ENST00000548787.1	chr12	69983358:69983467:69985838:69985939:69986755:69986883,	69985839	69985939	69985853	69985853	Frame_Shift_Del	A	-	p.K222fs
UCEC	TCGA-B5-A0JZ-01	DOCK9	ENST00000448493.2,ENST00000339416.2,ENST00000340449.3,ENST00000400228.2,ENST00000376460.1	chr13	99479083:99479141:99481560:99481776:99481896:99482010,	99481561	99481776	99481577	99481577	Frame_Shift_Del	T	-	p.N1628fs
UCEC	TCGA-B5-A0JZ-01	PSMA6	ENST00000554620.1,ENST00000540871.1,ENST00000261479.4,ENST00000555764.1,ENST00000554541.1	chr14	35779945:35780101:35782086:35782265:35783566:35783661,	35782087	35782265	35782216	35782216	Frame_Shift_Del	A	-	p.E180fs
UCEC	TCGA-B5-A0JZ-01	PSMA6	ENST00000553809.1	chr14	35779945:35780101:35782068:35782265:35783566:35783661,	35782069	35782265	35782216	35782216	Frame_Shift_Del	A	-	p.E180fs
UCEC	TCGA-B5-A0JZ-01	TBC1D10B	ENST00000409939.3	chr16	30376425:30376533:30376815:30376915:30380548:30381585,	30376816	30376915	30376910	30376911	Frame_Shift_Del	CT	-	p.S321fs
UCEC	TCGA-B5-A0JZ-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831971	72831972	Frame_Shift_Del	TT	-	p.K1537fs
UCEC	TCGA-B5-A0JZ-01	CENPN	ENST00000569461.1,ENST00000299572.5,ENST00000393335.3,ENST00000439957.3,ENST00000568445.1,ENST00000428963.2	chr16	81040867:81040882:81045534:81045715:81047740:81047786,	81045535	81045715	81045631	81045631	Frame_Shift_Del	T	-	p.D29fs
UCEC	TCGA-B5-A0JZ-01	AURKB	ENST00000577833.1,ENST00000582368.1,ENST00000316199.6,ENST00000581511.1,ENST00000534871.1,ENST00000584972.1,ENST00000585124.1	chr17	8109855:8109957:8110067:8110206:8110493:8110685,	8110068	8110206	8110129	8110130	Frame_Shift_Ins	-	G	p.R160fs
UCEC	TCGA-B5-A0JZ-01	AURKB	ENST00000578549.1	chr17	8109855:8109957:8110067:8110252:8110635:8110685,	8110068	8110252	8110129	8110130	Frame_Shift_Ins	-	G	p.R160fs
UCEC	TCGA-B5-A0JZ-01	LIG3	ENST00000590181.1,ENST00000262327.5	chr17	33307530:33307616:33310020:33310571:33313006:33313150,33307595:33307641:33310020:33310571:33313006:33313150,	33310021	33310571	33310486	33310486	Frame_Shift_Del	A	-	p.T154fs
UCEC	TCGA-B5-A0JZ-01	LIG3	ENST00000592690.1	chr17	33307595:33307641:33310250:33310571:33313006:33313150,	33310251	33310571	33310486	33310486	Frame_Shift_Del	A	-	p.T154fs
UCEC	TCGA-B5-A0JZ-01	FKBP8	ENST00000606531.2	chr19	18642938:18643065:18643473:18643624:18644079:18644157,	18643474	18643624	18643550	18643550	Frame_Shift_Del	G	-	p.T359fs
UCEC	TCGA-B5-A0JZ-01	FKBP8	ENST00000453489.2,ENST00000222308.4,ENST00000608443.1,ENST00000601844.1,ENST00000544835.3,ENST00000597960.3,ENST00000610101.1,ENST00000596558.2	chr19	18642938:18643065:18643473:18643605:18644079:18644157,	18643474	18643605	18643550	18643550	Frame_Shift_Del	G	-	p.T359fs
UCEC	TCGA-B5-A0JZ-01	COL4A5	ENST00000328300.6,ENST00000361603.2	chrX	107938036:107938151:107938496:107938669:107939526:107939992,	107938497	107938669	107938509	107938509	Frame_Shift_Del	G	-	p.G1612fs
UCEC	TCGA-B5-A0K0-01	ABL2	ENST00000392043.3,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3	chr1	179081443:179081533:179084012:179084165:179086466:179086651,	179084013	179084165	179084038	179084039	Frame_Shift_Ins	-	G	p.P512fs
UCEC	TCGA-B5-A0K0-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852454:182852503:182852654:182852770:182853747:182853948,	182852655	182852770	182852697	182852698	Frame_Shift_Ins	-	C	p.T1063fs
UCEC	TCGA-B5-A0K0-01	ZCCHC7	ENST00000461038.1,ENST00000336755.5,ENST00000488607.1,ENST00000534928.1,ENST00000463625.2	chr9	37304184:37304310:37305540:37305711:37327795:37327831,	37305541	37305711	37305598	37305599	Frame_Shift_Ins	-	C	p.A280fs
UCEC	TCGA-B5-A0K0-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.P205fs
UCEC	TCGA-B5-A0K0-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847355	28847356	Frame_Shift_Ins	-	C	p.G999fs
UCEC	TCGA-B5-A0K0-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847355	28847356	Frame_Shift_Ins	-	C	p.G999fs
UCEC	TCGA-B5-A0K0-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847355	28847356	Frame_Shift_Ins	-	C	p.G999fs
UCEC	TCGA-B5-A0K0-01	DMKN	ENST00000440396.1,ENST00000424570.2,ENST00000451297.2,ENST00000339686.3,ENST00000447113.2,ENST00000418261.1	chr19	36001085:36001154:36002312:36002495:36002664:36002715,	36002313	36002495	36002403	36002404	Frame_Shift_Del	GC	-	p.S276fs
UCEC	TCGA-B5-A0K1-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589620	67589620	Frame_Shift_Del	A	-	p.R461fs
UCEC	TCGA-B5-A0K1-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589622	67589623	Frame_Shift_Del	AA	-	p.E462fs
UCEC	TCGA-B5-A0K1-01	KIF3A	ENST00000378746.4	chr5	132039154:132039311:132046650:132046749:132051448:132051623,	132046651	132046749	132046656	132046657	Frame_Shift_Ins	-	T	p.R408fs
UCEC	TCGA-B5-A0K2-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.P117fs
UCEC	TCGA-B5-A0K2-01	FGGY	ENST00000371218.4,ENST00000303721.7,ENST00000413489.1,ENST00000430447.1	chr1	59762526:59762579:59811918:59812070:59844420:59844509,59787207:59787422:59811918:59812070:59844420:59844509,59805629:59805741:59811918:59812070:59844420:59844509,	59811919	59812070	59812016	59812017	Frame_Shift_Ins	-	G	p.V137fs
UCEC	TCGA-B5-A0K2-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889836	100889837	Frame_Shift_Ins	-	C	p.N123fs
UCEC	TCGA-B5-A0K2-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.A352fs
UCEC	TCGA-B5-A0K2-01	PIAS3	ENST00000369298.1,ENST00000475261.1,ENST00000393045.2	chr1	145581403:145581564:145583914:145584048:145584128:145584297,	145583915	145584048	145584022	145584023	Frame_Shift_Ins	-	C	p.C418fs
UCEC	TCGA-B5-A0K2-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.L289fs
UCEC	TCGA-B5-A0K2-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.F54fs
UCEC	TCGA-B5-A0K2-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.I85fs
UCEC	TCGA-B5-A0K2-01	GOLT1A	ENST00000308302.3	chr1	204168327:204168386:204170760:204170939:204172023:204172115,	204170761	204170939	204170835	204170836	Frame_Shift_Ins	-	C	p.G74fs
UCEC	TCGA-B5-A0K2-01	DISC1	ENST00000366637.3	chr1	232094573:232094634:232144530:232144729:232162180:232162300,	232144531	232144729	232144684	232144685	Frame_Shift_Ins	-	C	p.I764fs
UCEC	TCGA-B5-A0K2-01	DISC1	ENST00000439617.2	chr1	232094573:232094634:232144530:232144795:232162180:232162300,	232144531	232144795	232144684	232144685	Frame_Shift_Ins	-	C	p.I764fs
UCEC	TCGA-B5-A0K2-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658017	27658018	Frame_Shift_Ins	-	C	p.D195fs
UCEC	TCGA-B5-A0K2-01	TPRKB	ENST00000409716.2	chr2	73959710:73959827:73961555:73961715:73964428:73964462,	73961556	73961715	73961623	73961623	Frame_Shift_Del	T	-	p.N25fs
UCEC	TCGA-B5-A0K2-01	TPRKB	ENST00000497464.1,ENST00000272424.5,ENST00000484969.1	chr2	73959710:73959827:73961555:73961718:73964428:73964462,73959289:73959412:73961555:73961718:73964428:73964462,	73961556	73961718	73961623	73961623	Frame_Shift_Del	T	-	p.N25fs
UCEC	TCGA-B5-A0K2-01	USP39	ENST00000459775.1,ENST00000493829.1,ENST00000450066.2,ENST00000409766.3,ENST00000323701.6,ENST00000409470.1,ENST00000409025.1	chr2	85857843:85858069:85863175:85863253:85864491:85864559,	85863176	85863253	85863227	85863228	Frame_Shift_Ins	-	G	p.L334fs
UCEC	TCGA-B5-A0K2-01	GPAT2	ENST00000377137.3,ENST00000453542.1,ENST00000434632.1,ENST00000439254.1,ENST00000359548.4,ENST00000471757.1,ENST00000486463.1,ENST00000484440.1	chr2	96696158:96696282:96696491:96696596:96697008:96697082,	96696492	96696596	96696529	96696530	Frame_Shift_Ins	-	G	p.P106fs
UCEC	TCGA-B5-A0K2-01	MCM6	ENST00000264156.2	chr2	136620176:136620318:136622582:136622733:136623701:136623847,	136622583	136622733	136622724	136622725	Frame_Shift_Ins	-	C	p.G312fs
UCEC	TCGA-B5-A0K2-01	EPC2	ENST00000258484.6,ENST00000457184.1	chr2	149402608:149402739:149447782:149447942:149501190:149501336,	149447783	149447942	149447828	149447829	Frame_Shift_Ins	-	A	p.E67fs
UCEC	TCGA-B5-A0K2-01	OSBPL6	ENST00000477097.1,ENST00000357080.4,ENST00000359685.3,ENST00000409045.3,ENST00000392505.2,ENST00000409631.1,ENST00000190611.4,ENST00000315022.2	chr2	179192982:179193105:179196278:179196332:179197367:179197428,	179196279	179196332	179196280	179196281	Frame_Shift_Ins	-	T	p.R107fs
UCEC	TCGA-B5-A0K2-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724115	230724116	Frame_Shift_Ins	-	T	p.K133fs
UCEC	TCGA-B5-A0K2-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H242fs
UCEC	TCGA-B5-A0K2-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H242fs
UCEC	TCGA-B5-A0K2-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
UCEC	TCGA-B5-A0K2-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
UCEC	TCGA-B5-A0K2-01	ROBO1	ENST00000467549.1,ENST00000495273.1	chr3	78795892:78796050:78987750:78988077:79067556:79067694,	78987751	78988077	78987928	78987929	Frame_Shift_Del	CT	-	p.R107fs
UCEC	TCGA-B5-A0K2-01	B4GALT4	ENST00000483209.1,ENST00000359213.3,ENST00000393765.2,ENST00000467604.1	chr3	118935086:118935191:118937496:118937619:118942904:118943092,	118937497	118937619	118937592	118937593	Frame_Shift_Ins	-	C	p.G234fs
UCEC	TCGA-B5-A0K2-01	B4GALT4	ENST00000480814.1,ENST00000460321.1	chr3	118935086:118935191:118937558:118937619:118942904:118943092,	118937559	118937619	118937592	118937593	Frame_Shift_Ins	-	C	p.G234fs
UCEC	TCGA-B5-A0K2-01	UBA5	ENST00000473651.1,ENST00000469158.1,ENST00000493720.2,ENST00000264991.4,ENST00000356232.4,ENST00000494238.2	chr3	132389808:132389893:132390620:132390725:132390893:132391004,	132390621	132390725	132390676	132390676	Frame_Shift_Del	T	-	p.V212fs
UCEC	TCGA-B5-A0K2-01	CLNK	ENST00000226951.6,ENST00000442825.2	chr4	10586550:10586579:10599601:10599673:10669482:10669535,	10599602	10599673	10599604	10599605	Frame_Shift_Ins	-	T	p.N27fs
UCEC	TCGA-B5-A0K2-01	RASSF6	ENST00000307439.5,ENST00000342081.3,ENST00000335049.5,ENST00000395777.2	chr4	74450896:74451081:74453556:74453651:74459167:74459310,	74453557	74453651	74453634	74453635	Frame_Shift_Ins	-	C	p.E134fs
UCEC	TCGA-B5-A0K2-01	PTPN13	ENST00000511467.1,ENST00000427191.2,ENST00000436978.1,ENST00000411767.2,ENST00000316707.6,ENST00000502971.1,ENST00000507902.1	chr4	87593517:87593696:87607862:87607928:87610157:87610214,	87607863	87607928	87607896	87607897	Frame_Shift_Ins	-	G	p.W110fs
UCEC	TCGA-B5-A0K2-01	METAP1	ENST00000296411.6,ENST00000544031.1	chr4	99964399:99964538:99966329:99966461:99969883:99970027,	99966330	99966461	99966380	99966380	Frame_Shift_Del	T	-	p.F236fs
UCEC	TCGA-B5-A0K2-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.R3454fs
UCEC	TCGA-B5-A0K2-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823618	114823619	Frame_Shift_Ins	-	G	p.P537fs
UCEC	TCGA-B5-A0K2-01	FGG	ENST00000404648.3,ENST00000405164.1,ENST00000492082.1	chr4	155525324:155525506:155526048:155526218:155527856:155527974,	155526049	155526218	155526058	155526059	Frame_Shift_Ins	-	C	p.G430fs
UCEC	TCGA-B5-A0K2-01	NAF1	ENST00000274054.2	chr4	164050330:164050500:164054305:164054408:164058350:164058402,	164054306	164054408	164054331	164054331	Frame_Shift_Del	T	-	p.K336fs
UCEC	TCGA-B5-A0K2-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170354695:170354816:170359233:170359410:170384393:170384546,	170359234	170359410	170359358	170359358	Frame_Shift_Del	T	-	p.K880fs
UCEC	TCGA-B5-A0K2-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.E1158fs
UCEC	TCGA-B5-A0K2-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247869	55247869	Frame_Shift_Del	T	-	p.K529fs
UCEC	TCGA-B5-A0K2-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.G2553fs
UCEC	TCGA-B5-A0K2-01	SLC22A4	ENST00000200652.3	chr5	131649306:131649461:131657876:131658048:131662969:131663078,	131657877	131658048	131657936	131657936	Frame_Shift_Del	T	-	p.F238fs
UCEC	TCGA-B5-A0K2-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.P1027fs
UCEC	TCGA-B5-A0K2-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141243710	141243711	Frame_Shift_Ins	-	G	p.Q729fs
UCEC	TCGA-B5-A0K2-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647320	Frame_Shift_Del	A	-	p.K814fs
UCEC	TCGA-B5-A0K2-01	DCDC2	ENST00000378454.3	chr6	24178557:24178860:24205229:24205330:24278276:24278439,	24205230	24205330	24205282	24205283	Frame_Shift_Ins	-	C	p.A324fs
UCEC	TCGA-B5-A0K2-01	TAF11	ENST00000361288.4	chr6	34845749:34846497:34847743:34847840:34848065:34848122,	34847744	34847840	34847758	34847759	Frame_Shift_Ins	-	C	p.E164fs
UCEC	TCGA-B5-A0K2-01	ARMC2	ENST00000392644.4,ENST00000368972.3	chr6	109220896:109220995:109225432:109225608:109232101:109232204,	109225433	109225608	109225592	109225593	Frame_Shift_Ins	-	A	p.A336fs
UCEC	TCGA-B5-A0K2-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.T304fs
UCEC	TCGA-B5-A0K2-01	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379541	39379542	Frame_Shift_Ins	-	C	p.S271fs
UCEC	TCGA-B5-A0K2-01	ABCA13	ENST00000435803.1,ENST00000417403.1	chr7	48258950:48259102:48260877:48260906:48266858:48267022,	48260878	48260906	48260896	48260897	Frame_Shift_Ins	-	T	p.S153fs
UCEC	TCGA-B5-A0K2-01	IQUB	ENST00000484508.1,ENST00000466202.1,ENST00000469057.1,ENST00000434450.1,ENST00000324698.6	chr7	123136749:123136960:123142650:123142806:123142997:123143170,	123142651	123142806	123142786	123142787	Frame_Shift_Ins	-	T	p.N296fs
UCEC	TCGA-B5-A0K2-01	TRIM24	ENST00000343526.4,ENST00000415680.2	chr7	138258251:138258387:138261117:138261190:138262164:138262333,	138261118	138261190	138261142	138261143	Frame_Shift_Ins	-	C	p.H680fs
UCEC	TCGA-B5-A0K2-01	MCPH1	ENST00000344683.5	chr8	6299587:6299677:6301913:6303068:6312663:6312773,	6301914	6303068	6302638	6302639	Frame_Shift_Ins	-	A	p.G465fs
UCEC	TCGA-B5-A0K2-01	CHMP7	ENST00000397677.1,ENST00000313219.7	chr8	23104154:23104337:23106722:23106894:23112759:23112878,23104178:23104507:23106722:23106894:23112759:23112878,	23106723	23106894	23106784	23106785	Frame_Shift_Ins	-	G	p.W121fs
UCEC	TCGA-B5-A0K2-01	ASAP1	ENST00000524124.1,ENST00000521075.1,ENST00000357668.1,ENST00000518721.1	chr8	131104218:131104389:131124339:131124568:131127873:131127981,	131124340	131124568	131124498	131124499	Frame_Shift_Ins	-	G	p.Q748fs
UCEC	TCGA-B5-A0K2-01	C9orf72	ENST00000488117.1	chr9	27556558:27556794:27558488:27560297:27561582:27561647,	27558489	27560297	27560281	27560291	Frame_Shift_Del	AGTGTGAGCTG	-	p.I224fs
UCEC	TCGA-B5-A0K2-01	C9orf72	ENST00000380003.3	chr9	27558488:27558605:27560224:27560297:27561582:27561647,	27560225	27560297	27560281	27560291	Frame_Shift_Del	AGTGTGAGCTG	-	p.I224fs
UCEC	TCGA-B5-A0K2-01	SMC5	ENST00000361138.5	chr9	72879219:72879361:72882838:72882891:72892225:72892388,	72882839	72882891	72882844	72882845	Frame_Shift_Ins	-	T	p.G111fs
UCEC	TCGA-B5-A0K2-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.P1005fs
UCEC	TCGA-B5-A0K2-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525559	75525560	Frame_Shift_Ins	-	C	p.V456fs
UCEC	TCGA-B5-A0K2-01	FRA10AC1	ENST00000359204.4,ENST00000536233.1,ENST00000371430.2,ENST00000394100.2	chr10	95436409:95436448:95441236:95441355:95443812:95443855,	95441237	95441355	95441283	95441283	Frame_Shift_Del	T	-	p.K247fs
UCEC	TCGA-B5-A0K2-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
UCEC	TCGA-B5-A0K2-01	NRAP	ENST00000369360.3,ENST00000359988.3,ENST00000369358.4,ENST00000360478.3	chr10	115357727:115357832:115364367:115364679:115365520:115365628,	115364368	115364679	115364547	115364547	Frame_Shift_Del	C	-	p.A1350fs
UCEC	TCGA-B5-A0K2-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014791	119014792	Frame_Shift_Ins	-	C	p.G235fs
UCEC	TCGA-B5-A0K2-01	BTBD16	ENST00000368994.2,ENST00000260723.4	chr10	124058518:124058649:124066703:124066823:124088994:124089086,	124066704	124066823	124066813	124066813	Frame_Shift_Del	T	-	p.F301fs
UCEC	TCGA-B5-A0K2-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660979	3660980	Frame_Shift_Ins	-	G	p.H227fs
UCEC	TCGA-B5-A0K2-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.A229fs
UCEC	TCGA-B5-A0K2-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458782	62458783	Frame_Shift_Ins	-	C	p.G325fs
UCEC	TCGA-B5-A0K2-01	PPFIA1	ENST00000527612.1,ENST00000528750.1,ENST00000526262.1,ENST00000389547.3,ENST00000532504.1,ENST00000253925.7,ENST00000530390.1	chr11	70201744:70201917:70202266:70202360:70208200:70208281,	70202267	70202360	70202321	70202322	Frame_Shift_Ins	-	G	p.L848fs
UCEC	TCGA-B5-A0K2-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412023	77412024	Frame_Shift_Ins	-	G	p.P750fs
UCEC	TCGA-B5-A0K2-01	TMEM135	ENST00000535167.1,ENST00000532959.1,ENST00000340353.7,ENST00000305494.5	chr11	87024466:87024530:87025512:87025589:87029178:87029277,	87025513	87025589	87025514	87025515	Frame_Shift_Ins	-	T	p.G334fs
UCEC	TCGA-B5-A0K2-01	ALKBH8	ENST00000428149.2,ENST00000417449.2,ENST00000389568.3	chr11	107381612:107381762:107393024:107393281:107396166:107396318,	107393025	107393281	107393238	107393238	Frame_Shift_Del	G	-	p.P358fs
UCEC	TCGA-B5-A0K2-01	RDX	ENST00000528498.1,ENST00000528556.1,ENST00000530749.1,ENST00000533991.1,ENST00000343115.4,ENST00000405097.1,ENST00000532118.1	chr11	110134769:110134959:110135503:110135599:110143260:110143344,	110135504	110135599	110135560	110135561	Frame_Shift_Ins	-	A	p.F45fs
UCEC	TCGA-B5-A0K2-01	JAM3	ENST00000441717.3,ENST00000529443.2,ENST00000299106.4	chr11	134015840:134015940:134018441:134018571:134018658:134018713,	134018442	134018571	134018467	134018468	Frame_Shift_Ins	-	G	p.I291fs
UCEC	TCGA-B5-A0K2-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000443875.1,ENST00000402681.3,ENST00000541647.1	chr12	7170193:7170371:7171570:7171696:7172403:7172482,	7171571	7171696	7171652	7171653	Frame_Shift_Ins	-	C	p.C158fs
UCEC	TCGA-B5-A0K2-01	TROAP	ENST00000547923.1	chr12	49724344:49724356:49724443:49724726:49724996:49725190,	49724444	49724726	49724676	49724677	Frame_Shift_Ins	-	C	p.S683fs
UCEC	TCGA-B5-A0K2-01	TROAP	ENST00000257909.3	chr12	49723645:49723774:49723927:49724726:49724996:49725190,	49723928	49724726	49724676	49724677	Frame_Shift_Ins	-	C	p.S683fs
UCEC	TCGA-B5-A0K2-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927805	57927806	Frame_Shift_Ins	-	G	p.P205fs
UCEC	TCGA-B5-A0K2-01	B4GALNT1	ENST00000341156.4,ENST00000552350.1,ENST00000553142.1,ENST00000449184.3,ENST00000550764.1,ENST00000552798.1,ENST00000548888.1	chr12	58024779:58024869:58024982:58025147:58025697:58025916,	58024983	58025147	58025102	58025103	Frame_Shift_Ins	-	C	p.G88fs
UCEC	TCGA-B5-A0K2-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262563	25262564	Frame_Shift_Ins	-	G	p.V112fs
UCEC	TCGA-B5-A0K2-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306277	33306278	Frame_Shift_Ins	-	C	p.G721fs
UCEC	TCGA-B5-A0K2-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340958	41340959	Frame_Shift_Ins	-	G	p.P121fs
UCEC	TCGA-B5-A0K2-01	AKAP11	ENST00000025301.2	chr13	42888029:42888076:42891663:42891824:42893223:42897396,	42891664	42891824	42891727	42891728	Frame_Shift_Ins	-	C	p.D1823fs
UCEC	TCGA-B5-A0K2-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679572	21679573	Frame_Shift_Ins	-	C	p.D277fs
UCEC	TCGA-B5-A0K2-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679572	21679573	Frame_Shift_Ins	-	C	p.D277fs
UCEC	TCGA-B5-A0K2-01	DCAF5	ENST00000554681.1	chr14	69585910:69585947:69588933:69589077:69619481:69619593,69585910:69585947:69588933:69589077:69619660:69619716,	69588934	69589077	69588976	69588976	Frame_Shift_Del	A	-	p.C106fs
UCEC	TCGA-B5-A0K2-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75513702	75513703	Frame_Shift_Del	TC	-	p.E886fs
UCEC	TCGA-B5-A0K2-01	FLVCR2	ENST00000539311.1,ENST00000555058.1,ENST00000238667.4,ENST00000553587.1	chr14	76088400:76088563:76090954:76091095:76099971:76100039,	76090955	76091095	76090977	76090978	Frame_Shift_Ins	-	C	p.Y278fs
UCEC	TCGA-B5-A0K2-01	CHD2	ENST00000557381.1,ENST00000394196.4,ENST00000582447.1	chr15	93543741:93543870:93545406:93545547:93547846:93547876,	93545407	93545547	93545433	93545434	Frame_Shift_Ins	-	A	p.M1388fs
UCEC	TCGA-B5-A0K2-01	NOMO1	ENST00000287667.7	chr16	14978228:14978339:14980617:14980719:14982952:14983072,	14980618	14980719	14980694	14980695	Frame_Shift_Ins	-	C	p.F1100fs
UCEC	TCGA-B5-A0K2-01	VPS35	ENST00000568784.2,ENST00000299138.7	chr16	46693588:46694563:46695629:46695773:46696154:46696394,	46695630	46695773	46695735	46695735	Frame_Shift_Del	T	-	p.K702fs
UCEC	TCGA-B5-A0K2-01	NETO2	ENST00000303155.5	chr16	47163134:47163275:47165879:47165936:47177489:47177620,	47165880	47165936	47165885	47165886	Frame_Shift_Ins	-	T	p.T29fs
UCEC	TCGA-B5-A0K2-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.P596fs
UCEC	TCGA-B5-A0K2-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
UCEC	TCGA-B5-A0K2-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683557	29683558	Frame_Shift_Ins	-	C	p.T2565fs
UCEC	TCGA-B5-A0K2-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248899	44248899	Frame_Shift_Del	C	-	p.G204fs
UCEC	TCGA-B5-A0K2-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
UCEC	TCGA-B5-A0K2-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.Q90fs
UCEC	TCGA-B5-A0K2-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
UCEC	TCGA-B5-A0K2-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246441	56246442	Frame_Shift_Ins	-	C	p.G522fs
UCEC	TCGA-B5-A0K2-01	ZNF93	ENST00000588146.1	chr19	20011869:20011900:20027368:20027464:20043990:20044083,	20027369	20027464	20027415	20027415	Frame_Shift_Del	A	-	p.G59fs
UCEC	TCGA-B5-A0K2-01	BCAM	ENST00000270233.6,ENST00000589651.1	chr19	45321997:45322139:45322312:45322449:45322602:45322747,	45322313	45322449	45322439	45322440	Frame_Shift_Ins	-	G	p.L488fs
UCEC	TCGA-B5-A0K2-01	FERMT1	ENST00000217289.4	chr20	6088178:6088281:6090944:6091158:6093123:6093270,	6090945	6091158	6091014	6091015	Frame_Shift_Ins	-	G	p.Q226fs
UCEC	TCGA-B5-A0K2-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000395841.2,ENST00000371242.2	chr20	55943760:55943868:55948530:55948637:55948718:55948794,	55948531	55948637	55948625	55948626	Frame_Shift_Ins	-	C	p.N246fs
UCEC	TCGA-B5-A0K2-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58450325:58450524:58452439:58452610:58453062:58453100,	58452440	58452610	58452519	58452519	Frame_Shift_Del	T	-	p.N1024fs
UCEC	TCGA-B5-A0K2-01	IFNGR2	ENST00000545369.2,ENST00000290219.6,ENST00000439213.1,ENST00000405436.1,ENST00000381995.1	chr21	34793786:34793992:34799190:34799339:34804483:34804523,	34799191	34799339	34799320	34799320	Frame_Shift_Del	A	-	p.E181fs
UCEC	TCGA-B5-A0K2-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
UCEC	TCGA-B5-A0K2-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
UCEC	TCGA-B5-A0K2-01	CHEK2	ENST00000425190.2,ENST00000439346.1,ENST00000382580.2,ENST00000348295.3,ENST00000416671.1,ENST00000417588.1,ENST00000328354.6,ENST00000402731.1,ENST00000491919.1,ENST00000464581.1,ENST00000382578.1,ENST00000448511.1,ENST00000403642.1,ENST00000447421.1,ENST00000456369.1,ENST00000405598.1,ENST00000544772.1,ENST00000434810.1,ENST00000404276.1,ENST00000433028.2	chr22	29095825:29095925:29099492:29099554:29105993:29106047,	29099493	29099554	29099498	29099499	Frame_Shift_Ins	-	A	p.L301fs
UCEC	TCGA-B5-A0K2-01	HSD17B10	ENST00000375304.5	chrX	53458210:53458542:53458772:53458854:53458935:53459064,	53458773	53458854	53458819	53458820	Frame_Shift_Ins	-	C	p.G174fs
UCEC	TCGA-B5-A0K2-01	HSD17B10	ENST00000168216.6	chrX	53458210:53458542:53458745:53458854:53458935:53459064,	53458746	53458854	53458819	53458820	Frame_Shift_Ins	-	C	p.G174fs
UCEC	TCGA-B5-A0K2-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.P23fs
UCEC	TCGA-B5-A0K2-01	FMR1	ENST00000370477.1,ENST00000475038.1,ENST00000439526.2,ENST00000218200.8,ENST00000440235.2	chrX	147018028:147018132:147018984:147019119:147022094:147022156,	147018985	147019119	147019049	147019049	Frame_Shift_Del	A	-	p.E352fs
UCEC	TCGA-B5-A0K2-01	ZNF185	ENST00000370270.2,ENST00000318529.8,ENST00000535861.1,ENST00000324823.6,ENST00000449285.2,ENST00000370268.4,ENST00000539731.1,ENST00000426821.2,ENST00000454925.1,ENST00000318504.7	chrX	152113810:152114008:152128242:152128440:152132382:152132493,	152128243	152128440	152128422	152128423	Frame_Shift_Del	GA	-	p.R561fs
UCEC	TCGA-B5-A0K2-01	ZNF185	ENST00000436731.2	chrX	152113810:152114008:152128242:152128481:152132382:152132493,	152128243	152128481	152128422	152128423	Frame_Shift_Del	GA	-	p.R561fs
UCEC	TCGA-B5-A0K3-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101611	27101612	Frame_Shift_Ins	-	C	p.Q1631fs
UCEC	TCGA-B5-A0K3-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101611	27101612	Frame_Shift_Ins	-	C	p.Q1631fs
UCEC	TCGA-B5-A0K4-01	PLEKHG1	ENST00000358517.2,ENST00000475490.1,ENST00000367328.1	chr6	151116991:151117038:151121854:151122005:151125745:151125877,	151121855	151122005	151121930	151121942	Frame_Shift_Del	GAAACACTCGCTG	-	p.L294fs
UCEC	TCGA-B5-A0K4-01	EPDR1	ENST00000199448.4,ENST00000559325.1	chr7	37960921:37961053:37988441:37988650:37989801:37989888,37960259:37960810:37988441:37988650:37989801:37989888,	37988442	37988650	37988589	37988590	Frame_Shift_Ins	-	G	p.I259fs
UCEC	TCGA-B5-A0K4-01	DSCAML1	ENST00000527706.1,ENST00000321322.6	chr11	117314601:117314755:117321264:117321404:117329469:117329625,	117321265	117321404	117321331	117321332	Frame_Shift_Ins	-	G	p.P1274fs
UCEC	TCGA-B5-A0K4-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529627	55529648	Frame_Shift_Del	GCCCCAACTGTGCCGGGCCCTG	-	p.A104fs
UCEC	TCGA-B5-A0K4-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346245	29346246	Frame_Shift_Ins	-	T	p.P53fs
UCEC	TCGA-B5-A0K4-01	APBA2	ENST00000558259.1,ENST00000558402.1,ENST00000558330.1,ENST00000559814.1,ENST00000561069.1,ENST00000411764.1	chr15	29287959:29288009:29346047:29347038:29367123:29367204,	29346048	29347038	29346250	29346250	Frame_Shift_Del	A	-	p.S55fs
UCEC	TCGA-B5-A0K6-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35870973:35871069:35873608:35873760:35879572:35879684,	35873609	35873760	35873711	35873711	Frame_Shift_Del	A	-	p.E1300fs
UCEC	TCGA-B5-A0K6-01	RPRD2	ENST00000401000.4,ENST00000369067.3,ENST00000539519.1,ENST00000369068.4	chr1	150337186:150337395:150390071:150390201:150413398:150413499,	150390072	150390201	150390098	150390099	Frame_Shift_Del	TT	-	p.F78fs
UCEC	TCGA-B5-A0K6-01	BLZF1	ENST00000367808.3,ENST00000426663.1,ENST00000329281.2	chr1	169345777:169346217:169347567:169347767:169349718:169349800,	169347568	169347767	169347582	169347582	Frame_Shift_Del	A	-	p.L161fs
UCEC	TCGA-B5-A0K6-01	UNC50	ENST00000409347.1,ENST00000357765.2,ENST00000409975.1	chr2	99227237:99227358:99232669:99232809:99232894:99232996,	99232670	99232809	99232795	99232795	Frame_Shift_Del	T	-	p.L193fs
UCEC	TCGA-B5-A0K6-01	ZCCHC10	ENST00000513848.1	chr5	132335823:132335865:132342450:132342612:132358532:132358598,132334396:132334542:132342450:132342612:132362188:132362237,	132342451	132342612	132342530	132342531	Frame_Shift_Ins	-	T	p.K63fs
UCEC	TCGA-B5-A0K6-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459056	27459056	Frame_Shift_Del	A	-	p.K390fs
UCEC	TCGA-B5-A0K6-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000402799.1,ENST00000311027.5,ENST00000406482.1	chr11	47317046:47317130:47317447:47317606:47330141:47330250,	47317448	47317606	47317560	47317563	Frame_Shift_Del	TGTC	-	p.L1238fs
UCEC	TCGA-B5-A0K6-01	TXNDC11	ENST00000573174.1	chr16	11794307:11794420:11815432:11815526:11827837:11827855,11794307:11794420:11815432:11815526:11824500:11824630,11791989:11792181:11815432:11815526:11827837:11827855,	11815433	11815526	11815487	11815487	Frame_Shift_Del	G	-	p.Q247fs
UCEC	TCGA-B5-A0K6-01	COPS3	ENST00000577210.1,ENST00000578317.1,ENST00000584216.1,ENST00000492672.1,ENST00000417352.1,ENST00000539941.2,ENST00000268717.5,ENST00000577246.1,ENST00000486810.1,ENST00000439936.2	chr17	17165359:17165420:17168115:17168295:17171198:17171291,	17168116	17168295	17168199	17168200	Frame_Shift_Ins	-	T	p.K179fs
UCEC	TCGA-B5-A0K6-01	ICAM5	ENST00000586480.1,ENST00000221980.4	chr19	10402164:10402485:10402710:10402998:10403287:10403542,	10402711	10402998	10402955	10402955	Frame_Shift_Del	G	-	p.L306fs
UCEC	TCGA-B5-A0K6-01	KIRREL2	ENST00000360202.5,ENST00000262625.7,ENST00000586102.3,ENST00000592409.1	chr19	36348007:36348082:36348246:36348396:36349309:36349459,	36348247	36348396	36348336	36348337	Frame_Shift_Ins	-	G	p.W51fs
UCEC	TCGA-B5-A0K6-01	SMC1B	ENST00000404354.3,ENST00000357450.4	chr22	45792225:45792366:45794974:45795233:45798212:45798451,	45794975	45795233	45795116	45795116	Frame_Shift_Del	T	-	p.K324fs
UCEC	TCGA-B5-A0K7-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.P117fs
UCEC	TCGA-B5-A0K7-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889836	100889837	Frame_Shift_Ins	-	C	p.N123fs
UCEC	TCGA-B5-A0K7-01	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964709	100964710	Frame_Shift_Ins	-	C	p.S549fs
UCEC	TCGA-B5-A0K7-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.A352fs
UCEC	TCGA-B5-A0K7-01	SPAG17	ENST00000336338.5	chr1	118581914:118582067:118583352:118583464:118584425:118584665,	118583353	118583464	118583386	118583387	Frame_Shift_Ins	-	C	p.G1044fs
UCEC	TCGA-B5-A0K7-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789282	150789283	Frame_Shift_Ins	-	G	p.R595fs
UCEC	TCGA-B5-A0K7-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694022	156694023	Frame_Shift_Ins	-	G	p.L289fs
UCEC	TCGA-B5-A0K7-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160293220:160293320:160295332:160295442:160302237:160302347,	160295333	160295442	160295426	160295427	Frame_Shift_Ins	-	T	p.N171fs
UCEC	TCGA-B5-A0K7-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.F54fs
UCEC	TCGA-B5-A0K7-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.I85fs
UCEC	TCGA-B5-A0K7-01	GOLT1A	ENST00000308302.3	chr1	204168327:204168386:204170760:204170939:204172023:204172115,	204170761	204170939	204170835	204170836	Frame_Shift_Ins	-	C	p.G74fs
UCEC	TCGA-B5-A0K7-01	C4BPA	ENST00000424088.1	chr1	207277722:207277775:207286345:207286512:207287444:207287630,	207286346	207286512	207286375	207286376	Frame_Shift_Ins	-	C	p.H2fs
UCEC	TCGA-B5-A0K7-01	C4BPA	ENST00000421786.1	chr1	207277722:207277775:207286243:207286512:207287444:207287630,	207286244	207286512	207286375	207286376	Frame_Shift_Ins	-	C	p.H2fs
UCEC	TCGA-B5-A0K7-01	EML4	ENST00000401738.3,ENST00000318522.5	chr2	42483640:42483770:42488260:42488434:42490317:42490446,	42488261	42488434	42488301	42488302	Frame_Shift_Ins	-	A	p.E127fs
UCEC	TCGA-B5-A0K7-01	SCRN3	ENST00000490927.1	chr2	175260472:175260545:175264649:175264831:175265717:175265782,	175264650	175264831	175264719	175264720	Frame_Shift_Ins	-	G	p.W77fs
UCEC	TCGA-B5-A0K7-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724115	230724116	Frame_Shift_Ins	-	T	p.K133fs
UCEC	TCGA-B5-A0K7-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H242fs
UCEC	TCGA-B5-A0K7-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H242fs
UCEC	TCGA-B5-A0K7-01	GORASP1	ENST00000422110.2	chr3	39140925:39140994:39141795:39141945:39142506:39142593,	39141796	39141945	39141939	39141940	Frame_Shift_Ins	-	G	p.P207fs
UCEC	TCGA-B5-A0K7-01	GORASP1	ENST00000441302.2	chr3	39140925:39140994:39141795:39142368:39142506:39142593,	39141796	39142368	39141939	39141940	Frame_Shift_Ins	-	G	p.P207fs
UCEC	TCGA-B5-A0K7-01	PIK3CB	ENST00000544716.1,ENST00000462898.1,ENST00000289153.2,ENST00000469284.2,ENST00000473435.1,ENST00000477593.1,ENST00000481749.1,ENST00000493568.1	chr3	138409841:138409985:138413627:138413749:138417748:138417937,	138413628	138413749	138413709	138413710	Frame_Shift_Ins	-	G	p.R604fs
UCEC	TCGA-B5-A0K7-01	SEC62	ENST00000470355.1,ENST00000337002.4,ENST00000480708.1	chr3	169703592:169703653:169706027:169706147:169710381:169710509,	169706028	169706147	169706055	169706056	Frame_Shift_Ins	-	C	p.F213fs
UCEC	TCGA-B5-A0K7-01	ANK2	ENST00000394537.3,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000510275.2,ENST00000503423.1,ENST00000509550.1,ENST00000264366.6,ENST00000514960.1	chr4	114262867:114263072:114264172:114264298:114267055:114267178,	114264173	114264298	114264255	114264256	Frame_Shift_Ins	-	T	p.S1402fs
UCEC	TCGA-B5-A0K7-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.E1158fs
UCEC	TCGA-B5-A0K7-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.G2553fs
UCEC	TCGA-B5-A0K7-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.P1027fs
UCEC	TCGA-B5-A0K7-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975472	13975473	Frame_Shift_Ins	-	G	p.P138fs
UCEC	TCGA-B5-A0K7-01	CCDC136	ENST00000487361.1	chr7	128445901:128445955:128457811:128457918:128461852:128461939,128455851:128455985:128457811:128457918:128461852:128461939,128447413:128447599:128457811:128457918:128461852:128461939,	128457812	128457918	128457829	128457830	Frame_Shift_Ins	-	C	p.N1127fs
UCEC	TCGA-B5-A0K7-01	FRMD4A	ENST00000495956.1	chr10	13688333:13689035:13696415:13696512:13698635:13699123,	13696416	13696512	13696451	13696452	Frame_Shift_Ins	-	G	p.P1005fs
UCEC	TCGA-B5-A0K7-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
UCEC	TCGA-B5-A0K7-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.A229fs
UCEC	TCGA-B5-A0K7-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.Q164fs
UCEC	TCGA-B5-A0K7-01	TESPA1	ENST00000525978.1,ENST00000449076.1,ENST00000532757.1,ENST00000316577.8,ENST00000532804.1,ENST00000526532.1,ENST00000524622.1,ENST00000524923.1,ENST00000533446.1,ENST00000531122.1	chr12	55357642:55357734:55359836:55359935:55360171:55360208,	55359837	55359935	55359856	55359857	Frame_Shift_Ins	-	C	p.G142fs
UCEC	TCGA-B5-A0K7-01	E2F7	ENST00000322886.7	chr12	77415027:77417965:77419337:77419762:77421662:77421918,	77419338	77419762	77419716	77419717	Frame_Shift_Ins	-	G	p.P729fs
UCEC	TCGA-B5-A0K7-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021238	23021239	Frame_Shift_Ins	-	T	p.K33fs
UCEC	TCGA-B5-A0K7-01	SORD	ENST00000559230.1	chr15	45335454:45335619:45353179:45353424:45357468:45357587,	45353180	45353424	45353365	45353366	Frame_Shift_Ins	-	C	p.T122fs
UCEC	TCGA-B5-A0K7-01	SORD	ENST00000558580.1,ENST00000267814.9	chr15	45335454:45335619:45353264:45353424:45357468:45357587,	45353265	45353424	45353365	45353366	Frame_Shift_Ins	-	C	p.T122fs
UCEC	TCGA-B5-A0K7-01	GTF2A2	ENST00000559141.1	chr15	59934412:59934461:59942867:59942963:59944404:59944525,59934412:59934461:59942867:59942963:59949604:59949674,	59942868	59942963	59942953	59942954	Frame_Shift_Ins	-	G	p.Q31fs
UCEC	TCGA-B5-A0K7-01	GTF2A2	ENST00000396064.3	chr15	59934412:59934461:59942867:59942972:59944404:59944525,59931311:59931356:59942867:59942972:59944404:59944525,	59942868	59942972	59942953	59942954	Frame_Shift_Ins	-	G	p.Q31fs
UCEC	TCGA-B5-A0K7-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.P596fs
UCEC	TCGA-B5-A0K7-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.Q90fs
UCEC	TCGA-B5-A0K7-01	DNMT1	ENST00000588952.1,ENST00000586988.1,ENST00000340748.4,ENST00000540357.1,ENST00000588118.1,ENST00000592054.1	chr19	10287994:10288043:10291025:10291245:10291453:10291512,	10291026	10291245	10291083	10291084	Frame_Shift_Ins	-	G	p.P129fs
UCEC	TCGA-B5-A0K7-01	BCAM	ENST00000270233.6,ENST00000589651.1	chr19	45321997:45322139:45322312:45322449:45322602:45322747,	45322313	45322449	45322439	45322440	Frame_Shift_Ins	-	G	p.L488fs
UCEC	TCGA-B5-A0K7-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000395841.2,ENST00000371242.2	chr20	55943760:55943868:55948530:55948637:55948718:55948794,	55948531	55948637	55948625	55948626	Frame_Shift_Ins	-	C	p.N246fs
UCEC	TCGA-B5-A0K7-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
UCEC	TCGA-B5-A0K7-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
UCEC	TCGA-B5-A0K7-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662479	40662480	Frame_Shift_Ins	-	G	p.W749fs
UCEC	TCGA-B5-A0K7-01	UPRT	ENST00000462237.1,ENST00000526850.1,ENST00000530743.1,ENST00000373383.4,ENST00000474175.1,ENST00000373379.1	chrX	74517325:74517388:74519569:74519731:74520701:74520800,	74519570	74519731	74519681	74519682	Frame_Shift_Ins	-	C	p.F225fs
UCEC	TCGA-B5-A0K7-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.P23fs
UCEC	TCGA-B5-A0K9-01	EIF4G3	ENST00000496705.1,ENST00000374935.3,ENST00000544689.1,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3,ENST00000374933.3	chr1	21221860:21221994:21226189:21226436:21231375:21231430,	21226190	21226436	21226331	21226332	Frame_Shift_Ins	-	T	p.K563fs
UCEC	TCGA-B5-A0K9-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088788	27088788	Frame_Shift_Del	G	-	p.Q799fs
UCEC	TCGA-B5-A0K9-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.K586fs
UCEC	TCGA-B5-A0K9-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485089	35485090	Frame_Shift_Ins	-	T	p.M98fs
UCEC	TCGA-B5-A0K9-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43898659:43898861:43900056:43900156:43900870:43901000,	43900057	43900156	43900076	43900076	Frame_Shift_Del	G	-	p.G1043fs
UCEC	TCGA-B5-A0K9-01	PRPF3	ENST00000496202.1,ENST00000543398.1,ENST00000324862.6,ENST00000467329.1	chr1	150300778:150300925:150305154:150305238:150305449:150305670,	150305155	150305238	150305223	150305223	Frame_Shift_Del	C	-	p.S164fs
UCEC	TCGA-B5-A0K9-01	BCAN	ENST00000329117.5	chr1	156622606:156622684:156626073:156626181:156626729:156626832,	156626074	156626181	156626159	156626160	Frame_Shift_Ins	-	G	p.Y676fs
UCEC	TCGA-B5-A0K9-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169806067:169806253:169811557:169811680:169812814:169812910,	169811558	169811680	169811585	169811588	Frame_Shift_Del	GTAT	-	p.V585fs
UCEC	TCGA-B5-A0K9-01	EPRS	ENST00000477030.2,ENST00000366923.3,ENST00000609181.1	chr1	220205728:220205868:220206843:220207000:220208255:220208355,	220206844	220207000	220206845	220206845	Frame_Shift_Del	T	-	p.G130_splice
UCEC	TCGA-B5-A0K9-01	MTR	ENST00000366577.5,ENST00000366576.3	chr1	237023132:237023222:237024424:237024577:237025535:237025643,	237024425	237024577	237024474	237024474	Frame_Shift_Del	A	-	p.Q698fs
UCEC	TCGA-B5-A0K9-01	FMN2	ENST00000319653.9	chr1	240351506:240351562:240370098:240372032:240374390:240374535,	240370099	240372032	240371071	240371071	Frame_Shift_Del	C	-	p.P991fs
UCEC	TCGA-B5-A0K9-01	KIDINS220	ENST00000489024.1,ENST00000427284.1,ENST00000418530.1,ENST00000256707.3,ENST00000319688.5	chr2	8958824:8958923:8967115:8967259:8977609:8977726,	8967116	8967259	8967142	8967143	Frame_Shift_Ins	-	T	p.K27fs
UCEC	TCGA-B5-A0K9-01	LHCGR	ENST00000602369.1	chr2	48921379:48921443:48925753:48925914:48936086:48936161,	48925754	48925914	48925846	48925846	Frame_Shift_Del	T	-	p.K258fs
UCEC	TCGA-B5-A0K9-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925846	48925846	Frame_Shift_Del	T	-	p.K258fs
UCEC	TCGA-B5-A0K9-01	TPRKB	ENST00000318190.7,ENST00000409716.2	chr2	73957711:73957863:73959289:73959412:73961555:73961715,73957711:73957863:73959289:73959412:73959710:73959827,	73959290	73959412	73959299	73959300	Frame_Shift_Ins	-	G	p.P85fs
UCEC	TCGA-B5-A0K9-01	DNAH6	ENST00000398278.2,ENST00000602588.1	chr2	84908480:84908652:84913607:84913681:84915562:84915717,	84913608	84913681	84913642	84913642	Frame_Shift_Del	T	-	p.Y2366fs
UCEC	TCGA-B5-A0K9-01	ANKRD36	ENST00000420699.2,ENST00000461153.2	chr2	97875417:97875446:97875536:97875609:97877282:97877311,	97875537	97875609	97875580	97875580	Frame_Shift_Del	A	-	p.E1113fs
UCEC	TCGA-B5-A0K9-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087884	109087884	Frame_Shift_Del	A	-	p.E700fs
UCEC	TCGA-B5-A0K9-01	CASP10	ENST00000360132.3,ENST00000460140.1,ENST00000313728.7,ENST00000448480.1,ENST00000374650.3,ENST00000471191.1,ENST00000492363.1,ENST00000346817.5,ENST00000286186.6,ENST00000272879.5	chr2	202052468:202052522:202057706:202057842:202060564:202060671,	202057707	202057842	202057787	202057788	Frame_Shift_Ins	-	A	p.C174fs
UCEC	TCGA-B5-A0K9-01	RNF25	ENST00000295704.2,ENST00000473034.1	chr2	219528889:219529258:219529461:219529596:219529877:219529970,	219529462	219529596	219529514	219529514	Frame_Shift_Del	C	-	p.G250fs
UCEC	TCGA-B5-A0K9-01	TNK2	ENST00000489628.1	chr3	195595500:195595580:195596984:195597249:195599146:195599201,	195596985	195597249	195597006	195597006	Frame_Shift_Del	G	-	p.Q508fs
UCEC	TCGA-B5-A0K9-01	TNK2	ENST00000411741.1,ENST00000478623.1,ENST00000392400.1,ENST00000424563.1,ENST00000428187.1,ENST00000333602.6	chr3	195595500:195595580:195596984:195597076:195599146:195599201,	195596985	195597076	195597006	195597006	Frame_Shift_Del	G	-	p.Q508fs
UCEC	TCGA-B5-A0K9-01	TNK2	ENST00000489628.1	chr3	195595500:195595580:195596984:195597249:195599146:195599201,	195596985	195597249	195597045	195597046	Frame_Shift_Ins	-	G	p.P494fs
UCEC	TCGA-B5-A0K9-01	TNK2	ENST00000411741.1,ENST00000478623.1,ENST00000392400.1,ENST00000424563.1,ENST00000428187.1,ENST00000333602.6	chr3	195595500:195595580:195596984:195597076:195599146:195599201,	195596985	195597076	195597045	195597046	Frame_Shift_Ins	-	G	p.P494fs
UCEC	TCGA-B5-A0K9-01	RGS12	ENST00000344733.5,ENST00000336727.3,ENST00000504194.1,ENST00000382788.3,ENST00000338806.4	chr4	3429825:3429896:3430284:3430438:3432133:3432174,	3430285	3430438	3430399	3430399	Frame_Shift_Del	A	-	p.K1176fs
UCEC	TCGA-B5-A0K9-01	STX18	ENST00000306200.2,ENST00000503861.1,ENST00000505286.1,ENST00000507908.1,ENST00000512195.1	chr4	4440165:4440236:4458917:4458984:4459149:4459227,	4458918	4458984	4458970	4458971	Frame_Shift_Del	AA	-	p.L148fs
UCEC	TCGA-B5-A0K9-01	POLR2B	ENST00000441246.2,ENST00000478188.1,ENST00000381227.1,ENST00000314595.5,ENST00000431623.2	chr4	57887064:57887161:57888317:57888412:57889495:57889746,	57888318	57888412	57888355	57888355	Frame_Shift_Del	A	-	p.K820fs
UCEC	TCGA-B5-A0K9-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.K612fs
UCEC	TCGA-B5-A0K9-01	NEK1	ENST00000511633.1,ENST00000510533.1,ENST00000507142.1,ENST00000512193.1,ENST00000439128.2	chr4	170354695:170354816:170359233:170359410:170384393:170384546,	170359234	170359410	170359358	170359358	Frame_Shift_Del	T	-	p.K880fs
UCEC	TCGA-B5-A0K9-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985083	36985083	Frame_Shift_Del	A	-	p.K601fs
UCEC	TCGA-B5-A0K9-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492902	68492902	Frame_Shift_Del	A	-	p.K113fs
UCEC	TCGA-B5-A0K9-01	WDR41	ENST00000515253.1,ENST00000507029.1,ENST00000296679.4,ENST00000502528.1,ENST00000414719.2	chr5	76728717:76729112:76732085:76732219:76733160:76733249,	76732086	76732219	76732212	76732212	Frame_Shift_Del	A	-	p.F367fs
UCEC	TCGA-B5-A0K9-01	FER	ENST00000505323.1,ENST00000504143.2,ENST00000281092.4,ENST00000438717.2	chr5	108281830:108281923:108290429:108290633:108294925:108295018,	108290430	108290633	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
UCEC	TCGA-B5-A0K9-01	FER	ENST00000536402.1	chr5	108281830:108281923:108290429:108290568:108294925:108295018,	108290430	108290568	108290522	108290522	Frame_Shift_Del	A	-	p.L474fs
UCEC	TCGA-B5-A0K9-01	MAN2A1	ENST00000261483.4	chr5	109124634:109124749:109125160:109125228:109152973:109153139,	109125161	109125228	109125195	109125195	Frame_Shift_Del	A	-	p.Q637fs
UCEC	TCGA-B5-A0K9-01	CDKL3	ENST00000435211.1,ENST00000265334.4,ENST00000523832.1,ENST00000521118.1,ENST00000523054.1	chr5	133657481:133657594:133685939:133686118:133695587:133695782,	133685940	133686118	133686098	133686098	Frame_Shift_Del	T	-	p.K127fs
UCEC	TCGA-B5-A0K9-01	RBM27	ENST00000506502.1,ENST00000265271.5	chr5	145643053:145643194:145647211:145647331:145648769:145648844,	145647212	145647331	145647320	145647320	Frame_Shift_Del	A	-	p.K814fs
UCEC	TCGA-B5-A0K9-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634231	84634231	Frame_Shift_Del	A	-	p.Q245fs
UCEC	TCGA-B5-A0K9-01	DDO	ENST00000368924.3	chr6	110712973:110714545:110725976:110726153:110729536:110729645,	110725977	110726153	110726027	110726027	Frame_Shift_Del	A	-	p.F164fs
UCEC	TCGA-B5-A0K9-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508009	158508009	Frame_Shift_Del	C	-	p.P1111fs
UCEC	TCGA-B5-A0K9-01	ABCB5	ENST00000404938.2,ENST00000258738.6	chr7	20691042:20691246:20698128:20698299:20721127:20721289,	20698129	20698299	20698151	20698151	Frame_Shift_Del	A	-	p.E520fs
UCEC	TCGA-B5-A0K9-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30487913:30487997:30490831:30492656:30494752:30494927,	30490832	30492656	30491510	30491510	Frame_Shift_Del	C	-	p.G508fs
UCEC	TCGA-B5-A0K9-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91670017:91670212:91671359:91671500:91671981:91672085,	91671360	91671500	91671392	91671393	Frame_Shift_Del	AG	-	p.S1650fs
UCEC	TCGA-B5-A0K9-01	PEX1	ENST00000541751.1,ENST00000496420.1,ENST00000438045.1,ENST00000248633.4,ENST00000484913.1	chr7	92132354:92132509:92134045:92134216:92135561:92135658,	92134046	92134216	92134211	92134211	Frame_Shift_Del	T	-	p.R636fs
UCEC	TCGA-B5-A0K9-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138601643	138601643	Frame_Shift_Del	G	-	p.P910fs
UCEC	TCGA-B5-A0K9-01	ZNF467	ENST00000484747.1,ENST00000302017.3	chr7	149466178:149466289:149467528:149467645:149468087:149468163,	149467529	149467645	149467612	149467613	Frame_Shift_Ins	-	G	p.Q23fs
UCEC	TCGA-B5-A0K9-01	ZHX2	ENST00000314393.4	chr8	123875715:123875778:123963531:123966268:123985481:123986750,	123963532	123966268	123965335	123965336	Frame_Shift_Ins	-	C	p.A529fs
UCEC	TCGA-B5-A0K9-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
UCEC	TCGA-B5-A0K9-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851664	71851665	Frame_Shift_Ins	-	GG	p.K144fs
UCEC	TCGA-B5-A0K9-01	SLC16A12	ENST00000341233.4,ENST00000371790.4	chr10	91200864:91201008:91203512:91203616:91222135:91222381,	91203513	91203616	91203598	91203598	Frame_Shift_Del	A	-	p.F73fs
UCEC	TCGA-B5-A0K9-01	VWA2	ENST00000603594.1,ENST00000298715.4,ENST00000392982.3	chr10	116044621:116044729:116045697:116046270:116048696:116049248,	116045698	116046270	116046128	116046128	Frame_Shift_Del	G	-	p.L476fs
UCEC	TCGA-B5-A0K9-01	MKI67	ENST00000368654.3	chr10	129911690:129911866:129913191:129914271:129914754:129914800,	129913192	129914271	129913973	129913974	Frame_Shift_Ins	-	T	p.N233fs
UCEC	TCGA-B5-A0K9-01	ASRGL1	ENST00000535727.1,ENST00000529226.1,ENST00000534183.1	chr11	62105465:62105639:62124458:62124616:62156604:62156637,	62124459	62124616	62124558	62124558	Frame_Shift_Del	A	-	p.K145fs
UCEC	TCGA-B5-A0K9-01	RSF1	ENST00000308488.6,ENST00000528095.1,ENST00000360355.2	chr11	77413445:77413540:77436589:77436744:77451775:77451981,	77436590	77436744	77436612	77436612	Frame_Shift_Del	T	-	p.K237fs
UCEC	TCGA-B5-A0K9-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107299981	107299981	Frame_Shift_Del	T	-	p.N326fs
UCEC	TCGA-B5-A0K9-01	LRRK2	ENST00000298910.7,ENST00000479187.1,ENST00000430804.1	chr12	40709013:40709102:40713789:40713977:40714835:40714990,	40713790	40713977	40713869	40713870	Frame_Shift_Ins	-	A	p.S1636fs
UCEC	TCGA-B5-A0K9-01	NCKAP5L	ENST00000335999.6	chr12	50188547:50191177:50192132:50192246:50195630:50195750,	50192133	50192246	50192199	50192199	Frame_Shift_Del	G	-	p.P133fs
UCEC	TCGA-B5-A0K9-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645832	54645832	Frame_Shift_Del	T	-	p.K106fs
UCEC	TCGA-B5-A0K9-01	HIP1R	ENST00000535831.1,ENST00000452196.2,ENST00000253083.4,ENST00000536847.1	chr12	123339811:123339952:123340097:123340159:123340377:123340450,	123340098	123340159	123340131	123340131	Frame_Shift_Del	C	-	p.P343fs
UCEC	TCGA-B5-A0K9-01	RB1	ENST00000267163.4	chr13	48947540:48947628:48951053:48951170:48953729:48953786,	48951054	48951170	48951087	48951088	Frame_Shift_Del	AA	-	p.K417fs
UCEC	TCGA-B5-A0K9-01	TMCO3	ENST00000434316.2	chr13	114174930:114175048:114188359:114188555:114193671:114193797,	114188360	114188555	114188422	114188423	Frame_Shift_Ins	-	G	p.A469fs
UCEC	TCGA-B5-A0K9-01	TCF12	ENST00000438423.2,ENST00000557947.1,ENST00000267811.5,ENST00000557843.1,ENST00000333725.5	chr15	57213223:57213296:57355947:57356021:57383986:57384027,	57355948	57356021	57355977	57355978	Frame_Shift_Ins	-	G	p.W60fs
UCEC	TCGA-B5-A0K9-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967247	64967247	Frame_Shift_Del	A	-	p.K732fs
UCEC	TCGA-B5-A0K9-01	FANCI	ENST00000566895.1,ENST00000300027.8,ENST00000310775.7,ENST00000447611.2,ENST00000561894.1	chr15	89850715:89850760:89850843:89850903:89856134:89856203,	89850844	89850903	89850869	89850869	Frame_Shift_Del	C	-	p.T1206fs
UCEC	TCGA-B5-A0K9-01	ALDH1A3	ENST00000558869.1,ENST00000346623.6,ENST00000329841.5	chr15	101438287:101438390:101440779:101440964:101445727:101445892,	101440780	101440964	101440851	101440852	Frame_Shift_Ins	-	G	p.R319fs
UCEC	TCGA-B5-A0K9-01	NDE1	ENST00000396354.1,ENST00000572967.1,ENST00000576502.1,ENST00000396353.2,ENST00000574109.1,ENST00000342673.5,ENST00000396355.1	chr16	15785098:15785180:15788021:15788113:15790565:15790623,	15788022	15788113	15788039	15788039	Frame_Shift_Del	G	-	p.G241fs
UCEC	TCGA-B5-A0K9-01	RBL2	ENST00000544405.2,ENST00000567964.2,ENST00000262133.6	chr16	53472927:53473058:53476569:53476770:53480953:53481018,	53476570	53476770	53476580	53476580	Frame_Shift_Del	T	-	p.F128fs
UCEC	TCGA-B5-A0K9-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.R1893fs
UCEC	TCGA-B5-A0K9-01	ANKRD11	ENST00000330736.5,ENST00000378330.2,ENST00000301030.4	chr16	89341500:89341599:89345479:89352057:89352446:89352594,	89345480	89352057	89350538	89350538	Frame_Shift_Del	T	-	p.K804fs
UCEC	TCGA-B5-A0K9-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181552	18181552	Frame_Shift_Del	C	-	p.G755fs
UCEC	TCGA-B5-A0K9-01	PTPRM	ENST00000444013.1,ENST00000578571.1,ENST00000580170.1,ENST00000332175.8,ENST00000400053.4,ENST00000400060.4	chr18	8076452:8076562:8085668:8085870:8088746:8088849,	8085669	8085870	8085764	8085765	Frame_Shift_Ins	-	T	p.L549fs
UCEC	TCGA-B5-A0K9-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255362	9255362	Frame_Shift_Del	T	-	p.N699fs
UCEC	TCGA-B5-A0K9-01	RNMT	ENST00000588457.1,ENST00000535051.1	chr18	13754112:13754146:13759940:13760207:13762037:13762074,	13759941	13760207	13759960	13759961	Frame_Shift_Ins	-	T	p.A471fs
UCEC	TCGA-B5-A0K9-01	TXNL1	ENST00000217515.6,ENST00000587613.1,ENST00000590954.1,ENST00000586262.1	chr18	54285271:54285357:54291518:54291692:54293591:54293688,	54291519	54291692	54291642	54291642	Frame_Shift_Del	A	-	p.F82fs
UCEC	TCGA-B5-A0K9-01	NOTCH3	ENST00000263388.2	chr19	15276178:15276326:15276597:15276902:15278059:15278218,	15276598	15276902	15276860	15276861	Frame_Shift_Ins	-	C	p.A1802fs
UCEC	TCGA-B5-A0K9-01	UPK1A	ENST00000222275.2	chr19	36157714:36157798:36159355:36159556:36164133:36164208,	36159356	36159556	36159508	36159508	Frame_Shift_Del	T	-	p.S79fs
UCEC	TCGA-B5-A0K9-01	RTN2	ENST00000587597.1,ENST00000590526.1,ENST00000245923.4,ENST00000430715.2	chr19	45992105:45992244:45992603:45992811:45997423:45997678,45992132:45992244:45992603:45992811:45996417:45996478,	45992604	45992811	45992622	45992623	Frame_Shift_Ins	-	C	p.D408fs
UCEC	TCGA-B5-A0K9-01	EML2	ENST00000587804.1	chr19	46133221:46133304:46136118:46136397:46137579:46137729,	46136119	46136397	46136131	46136132	Frame_Shift_Ins	-	C	p.G367fs
UCEC	TCGA-B5-A0K9-01	KLK11	ENST00000391804.3	chr19	51526435:51526484:51527300:51527637:51527889:51528050,	51527301	51527637	51527304	51527304	Frame_Shift_Del	G	-	p.Q186fs
UCEC	TCGA-B5-A0K9-01	KLK11	ENST00000319756.3	chr19	51526435:51526484:51527300:51527566:51527893:51528050,51526435:51526484:51527300:51527566:51527889:51528050,	51527301	51527566	51527304	51527304	Frame_Shift_Del	G	-	p.Q186fs
UCEC	TCGA-B5-A0K9-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863768	47863768	Frame_Shift_Del	C	-	p.S3249fs
UCEC	TCGA-B5-A0K9-01	MEI1	ENST00000484966.1	chr22	42177831:42177849:42180342:42180424:42189832:42189914,	42180343	42180424	42180355	42180356	Frame_Shift_Del	CT	-	p.L1034fs
UCEC	TCGA-B5-A0K9-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A234fs
UCEC	TCGA-B5-A0K9-01	MAOA	ENST00000542639.1,ENST00000497485.1,ENST00000338702.3	chrX	43552537:43552675:43571118:43571223:43571951:43572043,	43571119	43571223	43571127	43571128	Frame_Shift_Del	AT	-	p.T105fs
UCEC	TCGA-B5-A0K9-01	AMOT	ENST00000524145.1	chrX	112058585:112059105:112065482:112066372:112068299:112068356,	112065483	112066372	112065500	112065501	Frame_Shift_Ins	-	G	p.P285fs
UCEC	TCGA-B5-A0K9-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.P23fs
UCEC	TCGA-B5-A11F-01	FAF1	ENST00000487898.1,ENST00000396153.2,ENST00000371778.4	chr1	51210355:51210447:51253671:51253877:51267302:51267349,	51253672	51253877	51253812	51253812	Frame_Shift_Del	G	-	p.P76fs
UCEC	TCGA-B5-A11F-01	SYDE2	ENST00000234668.6	chr1	85647780:85648883:85655739:85656435:85665934:85666196,	85655740	85656435	85656264	85656267	Frame_Shift_Del	TTAT	-	p.N305fs
UCEC	TCGA-B5-A11F-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225333027:225333081:225334805:225334951:225339706:225339775,	225334806	225334951	225334824	225334825	Frame_Shift_Ins	-	A	p.F1588fs
UCEC	TCGA-B5-A11F-01	DNAH14	ENST00000328556.5	chr1	225333027:225333081:225334805:225334957:225339706:225339775,	225334806	225334957	225334824	225334825	Frame_Shift_Ins	-	A	p.F1588fs
UCEC	TCGA-B5-A11F-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225333027:225333081:225334805:225334951:225339706:225339775,	225334806	225334951	225334828	225334829	Frame_Shift_Ins	-	AT	p.G1589fs
UCEC	TCGA-B5-A11F-01	DNAH14	ENST00000328556.5	chr1	225333027:225333081:225334805:225334957:225339706:225339775,	225334806	225334957	225334828	225334829	Frame_Shift_Ins	-	AT	p.G1589fs
UCEC	TCGA-B5-A11F-01	SERPINB1	ENST00000380739.5,ENST00000537185.1	chr6	2833641:2834246:2836089:2836257:2836341:2836484,	2836090	2836257	2836250	2836250	Frame_Shift_Del	C	-	p.R192fs
UCEC	TCGA-B5-A11F-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845628	63845628	Frame_Shift_Del	A	-	p.E456fs
UCEC	TCGA-B5-A11F-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107300005	107300005	Frame_Shift_Del	T	-	p.Y318fs
UCEC	TCGA-B5-A11I-01	FAF1	ENST00000487898.1,ENST00000396153.2,ENST00000371778.4	chr1	51210355:51210447:51253671:51253877:51267302:51267349,	51253672	51253877	51253812	51253812	Frame_Shift_Del	G	-	p.P76fs
UCEC	TCGA-B5-A11I-01	CD1E	ENST00000368165.3,ENST00000452291.2,ENST00000444681.2,ENST00000368167.3	chr1	158325621:158325730:158326287:158326381:158326553:158326682,158325683:158325791:158326287:158326381:158326553:158326682,158325616:158325895:158326287:158326381:158326553:158326682,158325616:158325895:158326287:158326381:158326517:158326682,	158326288	158326381	158326317	158326317	Frame_Shift_Del	T	-	p.C312fs
UCEC	TCGA-B5-A11I-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225333027:225333081:225334805:225334951:225339706:225339775,	225334806	225334951	225334824	225334825	Frame_Shift_Ins	-	A	p.F1588fs
UCEC	TCGA-B5-A11I-01	DNAH14	ENST00000328556.5	chr1	225333027:225333081:225334805:225334957:225339706:225339775,	225334806	225334957	225334824	225334825	Frame_Shift_Ins	-	A	p.F1588fs
UCEC	TCGA-B5-A11I-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225333027:225333081:225334805:225334951:225339706:225339775,	225334806	225334951	225334828	225334829	Frame_Shift_Ins	-	AT	p.G1589fs
UCEC	TCGA-B5-A11I-01	DNAH14	ENST00000328556.5	chr1	225333027:225333081:225334805:225334957:225339706:225339775,	225334806	225334957	225334828	225334829	Frame_Shift_Ins	-	AT	p.G1589fs
UCEC	TCGA-B5-A11I-01	GCC2	ENST00000482325.1,ENST00000480863.1,ENST00000309863.6	chr2	109113425:109113565:109116008:109116210:109124015:109125853,	109116009	109116210	109116025	109116026	Frame_Shift_Ins	-	A	p.I1600fs
UCEC	TCGA-B5-A11I-01	GCC2	ENST00000482325.1,ENST00000480863.1,ENST00000309863.6	chr2	109113425:109113565:109116008:109116210:109124015:109125853,	109116009	109116210	109116050	109116050	Frame_Shift_Del	G	-	p.E1608fs
UCEC	TCGA-B5-A11I-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508008	158508009	Frame_Shift_Ins	-	C	p.R1110fs
UCEC	TCGA-B5-A11I-01	FAM168A	ENST00000356467.4,ENST00000064778.4	chr11	73120531:73120706:73122438:73122581:73130918:73131044,	73122439	73122581	73122511	73122512	Frame_Shift_Del	TG	-	p.P125fs
UCEC	TCGA-B5-A11I-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1	chr14	74989492:74989621:74991826:74991928:74992777:74992817,	74991827	74991928	74991848	74991848	Frame_Shift_Del	G	-	p.L837fs
UCEC	TCGA-B5-A11I-01	QRICH2	ENST00000262765.5	chr17	74286072:74286158:74287095:74290102:74300495:74300606,	74287096	74290102	74287816	74287816	Frame_Shift_Del	A	-	p.S832fs
UCEC	TCGA-B5-A11O-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101635	27101635	Frame_Shift_Del	C	-	p.I1639fs
UCEC	TCGA-B5-A11O-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101635	27101635	Frame_Shift_Del	C	-	p.I1639fs
UCEC	TCGA-B5-A11O-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422305	229422305	Frame_Shift_Del	A	-	p.E35fs
UCEC	TCGA-B5-A11O-01	FRAS1	ENST00000264895.6,ENST00000512123.1	chr4	79371304:79371493:79372925:79373045:79373328:79373508,	79372926	79373045	79372997	79372997	Frame_Shift_Del	G	-	p.G2179fs
UCEC	TCGA-B5-A11O-01	CAST	ENST00000338252.3,ENST00000325674.7,ENST00000511097.2,ENST00000348386.3,ENST00000515063.1,ENST00000509903.1	chr5	96076448:96076487:96076969:96077062:96077197:96077284,96075741:96075822:96076969:96077062:96077197:96077284,	96076970	96077062	96077055	96077055	Frame_Shift_Del	A	-	p.E298fs
UCEC	TCGA-B5-A11O-01	C7orf43	ENST00000498638.1	chr7	99754256:99754339:99754467:99754619:99754716:99754762,	99754468	99754619	99754496	99754496	Frame_Shift_Del	C	-	p.G322fs
UCEC	TCGA-B5-A11O-01	C7orf43	ENST00000456769.1,ENST00000457641.1,ENST00000419037.1,ENST00000448720.1,ENST00000316937.3,ENST00000419841.1	chr7	99754256:99754339:99754467:99754615:99754716:99754762,	99754468	99754615	99754496	99754496	Frame_Shift_Del	C	-	p.G322fs
UCEC	TCGA-B5-A11O-01	DOCK1	ENST00000280333.6	chr10	129242389:129242543:129245657:129245809:129249595:129250781,	129245658	129245809	129245792	129245792	Frame_Shift_Del	C	-	p.P1850fs
UCEC	TCGA-B5-A11O-01	ATP12A	ENST00000381946.3,ENST00000218548.6	chr13	25259451:25259511:25262456:25262660:25263399:25263513,	25262457	25262660	25262564	25262564	Frame_Shift_Del	G	-	p.V112fs
UCEC	TCGA-B5-A11O-01	FERMT1	ENST00000217289.4,ENST00000478194.1,ENST00000536936.1	chr20	6056668:6057993:6060082:6060224:6064686:6064811,	6060083	6060224	6060205	6060206	Frame_Shift_Ins	-	T	p.K579fs
UCEC	TCGA-B5-A11S-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.L247fs
UCEC	TCGA-B5-A11V-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405951	157405951	Frame_Shift_Del	C	-	p.I718fs
UCEC	TCGA-B5-A11V-01	HIPK2	ENST00000428878.2	chr7	139316347:139316471:139415730:139416814:139477403:139477517,	139415731	139416814	139416811	139416812	Frame_Shift_Ins	-	T	p.M8fs
UCEC	TCGA-B5-A11V-01	EVPL	ENST00000586740.1,ENST00000587569.1,ENST00000301607.3	chr17	74014994:74015141:74015608:74015734:74017548:74017644,	74015609	74015734	74015649	74015649	Frame_Shift_Del	C	-	p.G366fs
UCEC	TCGA-B5-A11X-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.L247fs
UCEC	TCGA-B5-A11X-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67644787	67644787	Frame_Shift_Del	A	-	p.K18fs
UCEC	TCGA-B5-A11Z-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225333027:225333081:225334805:225334951:225339706:225339775,	225334806	225334951	225334824	225334825	Frame_Shift_Ins	-	A	p.F1588fs
UCEC	TCGA-B5-A11Z-01	DNAH14	ENST00000328556.5	chr1	225333027:225333081:225334805:225334957:225339706:225339775,	225334806	225334957	225334824	225334825	Frame_Shift_Ins	-	A	p.F1588fs
UCEC	TCGA-B5-A11Z-01	DNAH14	ENST00000430092.1,ENST00000439375.2	chr1	225333027:225333081:225334805:225334951:225339706:225339775,	225334806	225334951	225334828	225334829	Frame_Shift_Ins	-	AT	p.G1589fs
UCEC	TCGA-B5-A11Z-01	DNAH14	ENST00000328556.5	chr1	225333027:225333081:225334805:225334957:225339706:225339775,	225334806	225334957	225334828	225334829	Frame_Shift_Ins	-	AT	p.G1589fs
UCEC	TCGA-BG-A0LW-01	RUNX2	ENST00000371436.6,ENST00000352853.5,ENST00000465038.2,ENST00000371438.1,ENST00000576263.1,ENST00000541979.1	chr6	45296463:45296521:45390329:45390694:45399599:45399756,	45390330	45390694	45390354	45390355	Frame_Shift_Ins	-	C	p.S28fs
UCEC	TCGA-BG-A0LW-01	LMO7	ENST00000447038.1	chr13	76378455:76378677:76381615:76382335:76383289:76383319,	76381616	76382335	76382020	76382020	Frame_Shift_Del	C	-	p.A534fs
UCEC	TCGA-BG-A0LX-01	EPS15	ENST00000371733.3,ENST00000396122.4,ENST00000486505.1,ENST00000371730.2	chr1	51866589:51866625:51868106:51868197:51869090:51869123,	51868107	51868197	51868130	51868130	Frame_Shift_Del	A	-	p.F620fs
UCEC	TCGA-BG-A0LX-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91405205	91405205	Frame_Shift_Del	T	-	p.K569fs
UCEC	TCGA-BG-A0LX-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323837	235323838	Frame_Shift_Ins	-	T	p.K118fs
UCEC	TCGA-BG-A0LX-01	HEATR1	ENST00000366582.3,ENST00000366581.2	chr1	236716880:236717039:236717897:236718052:236718595:236718764,	236717898	236718052	236718039	236718039	Frame_Shift_Del	A	-	p.F1979fs
UCEC	TCGA-BG-A0LX-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.P864fs
UCEC	TCGA-BG-A0LX-01	DYSF	ENST00000409582.3,ENST00000409744.1,ENST00000409762.1,ENST00000409651.1,ENST00000429174.2,ENST00000409366.1,ENST00000413539.2,ENST00000394120.2,ENST00000258104.3,ENST00000410041.1,ENST00000410020.3	chr2	71797728:71797871:71801327:71801501:71816722:71816816,	71801328	71801501	71801374	71801374	Frame_Shift_Del	T	-	p.L1092fs
UCEC	TCGA-BG-A0LX-01	EIF5B	ENST00000289371.6	chr2	99976927:99977012:99977610:99978283:99980107:99980325,	99977611	99978283	99977806	99977806	Frame_Shift_Del	A	-	p.K148fs
UCEC	TCGA-BG-A0LX-01	MCM6	ENST00000264156.2	chr2	136620176:136620318:136622582:136622733:136623701:136623847,	136622583	136622733	136622724	136622725	Frame_Shift_Ins	-	C	p.G312fs
UCEC	TCGA-BG-A0LX-01	SCRN3	ENST00000272732.6,ENST00000458563.1,ENST00000548031.1,ENST00000409673.3,ENST00000490927.1	chr2	175264649:175264831:175265717:175265917:175268830:175268918,	175265718	175265917	175265780	175265780	Frame_Shift_Del	A	-	p.E135fs
UCEC	TCGA-BG-A0LX-01	BMPR2	ENST00000374580.4	chr2	203417442:203417611:203419974:203421254:203424418:203432474,	203419975	203421254	203420130	203420130	Frame_Shift_Del	A	-	p.E581fs
UCEC	TCGA-BG-A0LX-01	OBSL1	ENST00000373876.1,ENST00000604031.1,ENST00000265317.5,ENST00000456147.1	chr2	220420963:220421014:220421175:220421445:220422544:220422832,	220421176	220421445	220421220	220421221	Frame_Shift_Del	AA	-	p.L1431fs
UCEC	TCGA-BG-A0LX-01	HNRNPD	ENST00000513584.1,ENST00000541060.1	chr4	83278589:83278597:83279811:83279973:83280623:83280792,83278589:83278597:83279811:83279973:83294598:83294639,	83279812	83279973	83279883	83279883	Frame_Shift_Del	T	-	p.I184fs
UCEC	TCGA-BG-A0LX-01	DDX60L	ENST00000505890.1,ENST00000511577.1,ENST00000260184.7,ENST00000505863.1	chr4	169354160:169354266:169362487:169362643:169369788:169369930,	169362488	169362643	169362543	169362543	Frame_Shift_Del	A	-	p.F413fs
UCEC	TCGA-BG-A0LX-01	ZNF131	ENST00000509156.1,ENST00000399534.1	chr5	43123310:43123412:43161350:43162033:43173419:43173550,43139266:43139411:43161350:43162033:43173419:43173550,	43161351	43162033	43161952	43161952	Frame_Shift_Del	A	-	p.K325fs
UCEC	TCGA-BG-A0LX-01	DEPDC1B	ENST00000453022.2	chr5	59943224:59943360:59982788:59983054:59995872:59995961,	59982789	59983054	59982869	59982869	Frame_Shift_Del	T	-	p.K78fs
UCEC	TCGA-BG-A0LX-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466483	65466484	Frame_Shift_Del	GA	-	p.E398fs
UCEC	TCGA-BG-A0LX-01	MAN2A1	ENST00000261483.4	chr5	109124634:109124749:109125160:109125228:109152973:109153139,	109125161	109125228	109125195	109125195	Frame_Shift_Del	A	-	p.Q637fs
UCEC	TCGA-BG-A0LX-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675269	176675269	Frame_Shift_Del	A	-	p.K1529fs
UCEC	TCGA-BG-A0LX-01	FOXP4	ENST00000373060.1,ENST00000409208.1,ENST00000307972.4,ENST00000373063.3	chr6	41545723:41545819:41552506:41552629:41553168:41553255,	41552507	41552629	41552576	41552576	Frame_Shift_Del	C	-	p.P124fs
UCEC	TCGA-BG-A0LX-01	ANKRD6	ENST00000520839.1,ENST00000522441.1,ENST00000339746.4,ENST00000518253.1,ENST00000524056.1,ENST00000447838.2	chr6	90326277:90326376:90331640:90331745:90333128:90333179,90327676:90327750:90331640:90331745:90333128:90333179,	90331641	90331745	90331678	90331679	Frame_Shift_Del	AG	-	p.K277fs
UCEC	TCGA-BG-A0LX-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150005298	150005298	Frame_Shift_Del	G	-	p.P309fs
UCEC	TCGA-BG-A0LX-01	TCP1	ENST00000538530.1	chr6	160206505:160206528:160206931:160207052:160208774:160208934,	160206932	160207052	160207001	160207001	Frame_Shift_Del	T	-	p.N103fs
UCEC	TCGA-BG-A0LX-01	TCP1	ENST00000420894.2,ENST00000545764.1,ENST00000539948.1,ENST00000392168.2,ENST00000321394.7,ENST00000537390.1	chr6	160206505:160206528:160206931:160207029:160208774:160208903,	160206932	160207029	160207001	160207001	Frame_Shift_Del	T	-	p.N103fs
UCEC	TCGA-BG-A0LX-01	BCAP29	ENST00000379119.2,ENST00000445771.2,ENST00000465919.1,ENST00000379117.2,ENST00000005259.4,ENST00000442065.1,ENST00000457837.1,ENST00000479917.1,ENST00000491150.1,ENST00000421217.1	chr7	107224363:107224427:107234399:107234550:107236311:107236366,	107234400	107234550	107234539	107234540	Frame_Shift_Ins	-	T	p.L111fs
UCEC	TCGA-BG-A0LX-01	NOBOX	ENST00000223140.5	chr7	144097298:144097405:144098138:144098690:144100749:144100786,	144098139	144098690	144098495	144098496	Frame_Shift_Ins	-	G	p.R163fs
UCEC	TCGA-BG-A0LX-01	FREM1	ENST00000380880.3,ENST00000380881.4,ENST00000422223.2,ENST00000497634.2	chr9	14784367:14784632:14788916:14789112:14792740:14792799,	14788917	14789112	14789027	14789028	Frame_Shift_Del	GT	-	p.T1356fs
UCEC	TCGA-BG-A0LX-01	FREM1	ENST00000466679.1	chr9	14784367:14784632:14788916:14789064:14792740:14792799,	14788917	14789064	14789027	14789028	Frame_Shift_Del	GT	-	p.T1356fs
UCEC	TCGA-BG-A0LX-01	CAMSAP1	ENST00000409386.3,ENST00000389532.4,ENST00000483991.1,ENST00000312405.6	chr9	138710855:138710992:138712684:138715106:138715795:138715880,	138712685	138715106	138712841	138712841	Frame_Shift_Del	G	-	p.P1222fs
UCEC	TCGA-BG-A0LX-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014791	119014792	Frame_Shift_Ins	-	C	p.G235fs
UCEC	TCGA-BG-A0LX-01	LSP1	ENST00000406638.2,ENST00000421485.1,ENST00000451814.1,ENST00000432093.1,ENST00000405957.2,ENST00000429923.1,ENST00000417766.1,ENST00000457279.1,ENST00000311604.3,ENST00000381775.1,ENST00000446808.1	chr11	1892581:1892642:1902661:1902826:1904648:1904658,1901316:1901454:1902661:1902826:1904648:1904658,	1902662	1902826	1902785	1902786	Frame_Shift_Ins	-	C	p.E105fs
UCEC	TCGA-BG-A0LX-01	LTBR	ENST00000541102.1,ENST00000535739.1,ENST00000544454.1,ENST00000228918.4,ENST00000536876.1,ENST00000539925.1	chr12	6494392:6494545:6495231:6495328:6495512:6495537,	6495232	6495328	6495298	6495298	Frame_Shift_Del	C	-	p.S180fs
UCEC	TCGA-BG-A0LX-01	LRRC23	ENST00000007969.8,ENST00000433346.1,ENST00000323702.5,ENST00000436789.1,ENST00000415834.1,ENST00000429740.1,ENST00000443597.2	chr12	7014797:7014923:7015008:7015118:7015572:7015619,	7015009	7015118	7015019	7015019	Frame_Shift_Del	C	-	p.T46fs
UCEC	TCGA-BG-A0LX-01	PARPBP	ENST00000327680.2,ENST00000412715.2,ENST00000378128.3,ENST00000358383.5,ENST00000392911.2,ENST00000417507.2	chr12	102542012:102542241:102547646:102547754:102558215:102558386,	102547647	102547754	102547674	102547674	Frame_Shift_Del	A	-	p.K216fs
UCEC	TCGA-BG-A0LX-01	PARPBP	ENST00000457614.2	chr12	102517765:102517819:102547646:102547767:102559506:102559661,	102547647	102547767	102547674	102547674	Frame_Shift_Del	A	-	p.K216fs
UCEC	TCGA-BG-A0LX-01	UPF3A	ENST00000475218.2	chr13	115051993:115052104:115057079:115057267:115064314:115064475,	115057080	115057267	115057211	115057211	Frame_Shift_Del	A	-	p.K264fs
UCEC	TCGA-BG-A0LX-01	CCNK	ENST00000389879.5,ENST00000553865.1	chr14	99969947:99969981:99973412:99973484:99976493:99977851,	99973413	99973484	99973474	99973474	Frame_Shift_Del	C	-	p.H369fs
UCEC	TCGA-BG-A0LX-01	MFGE8	ENST00000558029.1,ENST00000566497.1,ENST00000268151.7,ENST00000268150.8	chr15	89450425:89450607:89453022:89453154:89456477:89456490,	89453023	89453154	89453139	89453139	Frame_Shift_Del	T	-	p.N30fs
UCEC	TCGA-BG-A0LX-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-BG-A0LX-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-BG-A0LX-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-BG-A0LX-01	MAPT	ENST00000570299.1,ENST00000334239.8,ENST00000446361.3	chr17	43972039:43972052:44039686:44039836:44049224:44049311,43972039:43972052:44039686:44039836:44055740:44055791,	44039687	44039836	44039781	44039781	Frame_Shift_Del	G	-	p.Q26fs
UCEC	TCGA-BG-A0LX-01	ALPK2	ENST00000361673.3	chr18	56196322:56196470:56202065:56205456:56246045:56246256,	56202066	56205456	56202539	56202540	Frame_Shift_Ins	-	T	p.M1627fs
UCEC	TCGA-BG-A0LX-01	PRKACA	ENST00000589994.1,ENST00000587372.1,ENST00000308677.4,ENST00000588209.1,ENST00000536649.1,ENST00000350356.3	chr19	14208172:14208295:14208390:14208486:14208575:14208702,	14208391	14208486	14208459	14208459	Frame_Shift_Del	C	-	p.V192fs
UCEC	TCGA-BG-A0LX-01	SLC8A2	ENST00000236877.6,ENST00000539381.1,ENST00000542837.1	chr19	47933491:47933722:47935423:47935702:47940718:47940818,	47935424	47935702	47935586	47935587	Frame_Shift_Ins	-	G	p.P742fs
UCEC	TCGA-BG-A0LX-01	SIGLEC6	ENST00000343300.4,ENST00000391797.3	chr19	52023252:52023509:52032977:52033235:52033690:52033738,	52032978	52033235	52033148	52033148	Frame_Shift_Del	G	-	p.P281fs
UCEC	TCGA-BG-A0M0-01	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964709	100964710	Frame_Shift_Ins	-	C	p.S549fs
UCEC	TCGA-BG-A0M0-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.A352fs
UCEC	TCGA-BG-A0M0-01	ECM1	ENST00000496744.1,ENST00000498579.1,ENST00000490346.1	chr1	150482006:150482057:150482136:150482478:150482577:150482628,	150482137	150482478	150482150	150482151	Frame_Shift_Ins	-	C	p.A45fs
UCEC	TCGA-BG-A0M0-01	ECM1	ENST00000369049.4	chr1	150482006:150482057:150482136:150482232:150482310:150482478,	150482137	150482232	150482150	150482151	Frame_Shift_Ins	-	C	p.A45fs
UCEC	TCGA-BG-A0M0-01	ECM1	ENST00000346569.6,ENST00000369047.4	chr1	150482006:150482057:150482136:150482238:150482397:150482478,	150482137	150482238	150482150	150482151	Frame_Shift_Ins	-	C	p.A45fs
UCEC	TCGA-BG-A0M0-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.V377fs
UCEC	TCGA-BG-A0M0-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.F54fs
UCEC	TCGA-BG-A0M0-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.I85fs
UCEC	TCGA-BG-A0M0-01	CDC42BPA	ENST00000366769.3,ENST00000535525.1,ENST00000334218.5,ENST00000366766.2,ENST00000366765.3,ENST00000366764.2	chr1	227300012:227300123:227300371:227300614:227307504:227307638,	227300372	227300614	227300374	227300375	Frame_Shift_Ins	-	T	p.K629fs
UCEC	TCGA-BG-A0M0-01	NOL10	ENST00000381685.5,ENST00000345985.3,ENST00000542668.1,ENST00000538384.1	chr2	10711998:10712316:10717761:10717864:10729168:10729416,	10717762	10717864	10717825	10717826	Frame_Shift_Ins	-	T	p.N628fs
UCEC	TCGA-BG-A0M0-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389836	11389837	Frame_Shift_Ins	-	A	p.W138fs
UCEC	TCGA-BG-A0M0-01	FEZ2	ENST00000305852.7,ENST00000405912.3,ENST00000357996.4,ENST00000413938.1,ENST00000487282.1,ENST00000464964.1	chr2	36782830:36782891:36785580:36785656:36805739:36805975,	36785581	36785656	36785621	36785622	Frame_Shift_Ins	-	T	p.N340fs
UCEC	TCGA-BG-A0M0-01	LHCGR	ENST00000602369.1	chr2	48921379:48921443:48925753:48925914:48936086:48936161,	48925754	48925914	48925846	48925846	Frame_Shift_Del	T	-	p.K258fs
UCEC	TCGA-BG-A0M0-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925846	48925846	Frame_Shift_Del	T	-	p.K258fs
UCEC	TCGA-BG-A0M0-01	USP34	ENST00000398571.2	chr2	61622317:61622368:61632842:61633263:61647880:61647968,	61632843	61633263	61633019	61633020	Frame_Shift_Ins	-	T	p.K125fs
UCEC	TCGA-BG-A0M0-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724115	230724116	Frame_Shift_Ins	-	T	p.K133fs
UCEC	TCGA-BG-A0M0-01	NDUFA10	ENST00000404554.1,ENST00000252711.2	chr2	240951033:240951113:240954155:240954277:240957969:240958056,	240954156	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H242fs
UCEC	TCGA-BG-A0M0-01	NDUFA10	ENST00000485344.2	chr2	240946732:240946787:240951033:240954277:240957969:240958056,	240951034	240954277	240954220	240954221	Frame_Shift_Ins	-	G	p.H242fs
UCEC	TCGA-BG-A0M0-01	MAP4	ENST00000426837.2,ENST00000264724.11,ENST00000360240.6,ENST00000395734.3	chr3	47908735:47908828:47910703:47910817:47912302:47912595,	47910704	47910817	47910798	47910799	Frame_Shift_Ins	-	T	p.T960fs
UCEC	TCGA-BG-A0M0-01	SEC62	ENST00000470355.1,ENST00000337002.4,ENST00000480708.1	chr3	169703592:169703653:169706027:169706147:169710381:169710509,	169706028	169706147	169706055	169706056	Frame_Shift_Ins	-	C	p.F213fs
UCEC	TCGA-BG-A0M0-01	RASSF6	ENST00000307439.5,ENST00000342081.3,ENST00000335049.5,ENST00000395777.2	chr4	74450896:74451081:74453556:74453651:74459167:74459310,	74453557	74453651	74453634	74453635	Frame_Shift_Ins	-	C	p.E134fs
UCEC	TCGA-BG-A0M0-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89042786:89042944:89052212:89052365:89052954:89053069,	89052213	89052365	89052270	89052271	Frame_Shift_Ins	-	T	p.N158fs
UCEC	TCGA-BG-A0M0-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.E1158fs
UCEC	TCGA-BG-A0M0-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.G2553fs
UCEC	TCGA-BG-A0M0-01	DCDC2	ENST00000378454.3	chr6	24178557:24178860:24205229:24205330:24278276:24278439,	24205230	24205330	24205282	24205283	Frame_Shift_Ins	-	C	p.A324fs
UCEC	TCGA-BG-A0M0-01	REV3L	ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111636469:111636584:111643771:111643881:111650734:111650941,	111643772	111643881	111643799	111643800	Frame_Shift_Ins	-	C	p.A2775fs
UCEC	TCGA-BG-A0M0-01	REV3L	ENST00000470871.1,ENST00000368802.3,ENST00000358835.3,ENST00000434009.1,ENST00000368805.1,ENST00000435970.1,ENST00000422377.1	chr6	111708967:111709116:111709203:111709288:111710308:111710413,	111709204	111709288	111709251	111709251	Frame_Shift_Del	T	-	p.K300fs
UCEC	TCGA-BG-A0M0-01	MAP3K4	ENST00000348824.7,ENST00000366920.2,ENST00000544041.1,ENST00000392142.4,ENST00000490904.2	chr6	161412875:161413115:161455290:161455481:161469647:161469835,	161455291	161455481	161455390	161455391	Frame_Shift_Ins	-	C	p.S84fs
UCEC	TCGA-BG-A0M0-01	SLC18A1	ENST00000517776.1,ENST00000276373.5,ENST00000519026.1,ENST00000265808.7,ENST00000440926.1	chr8	20003298:20003387:20004768:20004902:20005113:20005233,	20004769	20004902	20004787	20004788	Frame_Shift_Ins	-	G	p.P482fs
UCEC	TCGA-BG-A0M0-01	FBXO16	ENST00000380254.2,ENST00000517673.1	chr8	28331288:28331324:28340864:28340979:28347702:28347741,	28340865	28340979	28340937	28340938	Frame_Shift_Ins	-	T	p.N9fs
UCEC	TCGA-BG-A0M0-01	CNTRL	ENST00000373855.1,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123910949:123911139:123912447:123912761:123914762:123914971,	123912448	123912761	123912689	123912690	Frame_Shift_Ins	-	C	p.P1297fs
UCEC	TCGA-BG-A0M0-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877089	16877090	Frame_Shift_Ins	-	G	p.Q3429fs
UCEC	TCGA-BG-A0M0-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962451	21962452	Frame_Shift_Ins	-	G	p.E408fs
UCEC	TCGA-BG-A0M0-01	APIP	ENST00000278359.5,ENST00000527830.1,ENST00000532428.2,ENST00000395787.3	chr11	34904222:34904363:34904883:34905051:34909839:34909975,	34904884	34905051	34904908	34904909	Frame_Shift_Ins	-	C	p.E219fs
UCEC	TCGA-BG-A0M0-01	PHF21A	ENST00000534766.1	chr11	45959769:45959863:45967390:45967649:45970436:45970497,	45967391	45967649	45967494	45967495	Frame_Shift_Ins	-	G	p.Q449fs
UCEC	TCGA-BG-A0M0-01	PHF21A	ENST00000527401.1,ENST00000418153.2,ENST00000257821.4	chr11	45959769:45959863:45967390:45967554:45970436:45970497,	45967391	45967554	45967494	45967495	Frame_Shift_Ins	-	G	p.Q449fs
UCEC	TCGA-BG-A0M0-01	TMX2	ENST00000529403.1,ENST00000278422.4	chr11	57505079:57505140:57505825:57505902:57506135:57506242,57505307:57505498:57505825:57505902:57506135:57506242,	57505826	57505902	57505845	57505846	Frame_Shift_Ins	-	C	p.K128fs
UCEC	TCGA-BG-A0M0-01	PATL1	ENST00000300146.9	chr11	59423971:59424073:59425002:59425197:59426338:59426419,	59425003	59425197	59425145	59425146	Frame_Shift_Ins	-	G	p.Q160fs
UCEC	TCGA-BG-A0M0-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.I539fs
UCEC	TCGA-BG-A0M0-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000443875.1,ENST00000402681.3,ENST00000541647.1	chr12	7170193:7170371:7171570:7171696:7172403:7172482,	7171571	7171696	7171652	7171653	Frame_Shift_Ins	-	C	p.C158fs
UCEC	TCGA-BG-A0M0-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306277	33306278	Frame_Shift_Ins	-	C	p.G721fs
UCEC	TCGA-BG-A0M0-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340958	41340959	Frame_Shift_Ins	-	G	p.P121fs
UCEC	TCGA-BG-A0M0-01	WDFY2	ENST00000298125.5	chr13	52234731:52234799:52249305:52249379:52277731:52277786,	52249306	52249379	52249325	52249325	Frame_Shift_Del	T	-	p.S75fs
UCEC	TCGA-BG-A0M0-01	MGRN1	ENST00000399577.5,ENST00000262370.7,ENST00000587747.1,ENST00000591673.1	chr16	4727463:4727573:4730032:4730098:4731550:4731581,	4730033	4730098	4730042	4730042	Frame_Shift_Del	A	-	p.K359fs
UCEC	TCGA-BG-A0M0-01	NOMO1	ENST00000287667.7	chr16	14978228:14978339:14980617:14980719:14982952:14983072,	14980618	14980719	14980694	14980695	Frame_Shift_Ins	-	C	p.F1100fs
UCEC	TCGA-BG-A0M0-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.F623fs
UCEC	TCGA-BG-A0M0-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.Q90fs
UCEC	TCGA-BG-A0M0-01	THOC1	ENST00000579891.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6	chr18	224923:224994:225088:225139:225336:225403,	225089	225139	225118	225119	Frame_Shift_Ins	-	G	p.P369fs
UCEC	TCGA-BG-A0M0-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.V81fs
UCEC	TCGA-BG-A0M0-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.P102fs
UCEC	TCGA-BG-A0M0-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000395841.2,ENST00000371242.2	chr20	55943760:55943868:55948530:55948637:55948718:55948794,	55948531	55948637	55948625	55948626	Frame_Shift_Ins	-	C	p.N246fs
UCEC	TCGA-BG-A0M0-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982956	40982957	Frame_Shift_Ins	-	C	p.Q25fs
UCEC	TCGA-BG-A0M0-01	ARAF	ENST00000377045.4	chrX	47424650:47424749:47426037:47426179:47426282:47426310,	47426038	47426179	47426094	47426094	Frame_Shift_Del	C	-	p.A205fs
UCEC	TCGA-BG-A0M0-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.P23fs
UCEC	TCGA-BG-A0M0-01	AFF2	ENST00000370458.1,ENST00000370457.5,ENST00000342251.3	chrX	147582528:147582664:147733519:147733640:147743428:147744289,	147733520	147733640	147733547	147733548	Frame_Shift_Ins	-	A	p.L25fs
UCEC	TCGA-BG-A0M2-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510227	195510228	Frame_Shift_Ins	-	G	p.E2741fs
UCEC	TCGA-BG-A0M2-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510230	195510230	Frame_Shift_Del	C	-	p.E2741fs
UCEC	TCGA-BG-A0M3-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.P117fs
UCEC	TCGA-BG-A0M3-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.A352fs
UCEC	TCGA-BG-A0M3-01	SPAG17	ENST00000336338.5	chr1	118581914:118582067:118583352:118583464:118584425:118584665,	118583353	118583464	118583386	118583387	Frame_Shift_Ins	-	C	p.G1044fs
UCEC	TCGA-BG-A0M3-01	PDE4DIP	ENST00000524974.1,ENST00000369354.3,ENST00000481227.2,ENST00000313382.9,ENST00000369359.4,ENST00000369356.4,ENST00000530740.1	chr1	144857639:144857728:144863317:144863442:144864134:144864324,144859890:144859998:144863317:144863442:144864134:144864324,	144863318	144863442	144863324	144863324	Frame_Shift_Del	G	-	p.L2027fs
UCEC	TCGA-BG-A0M3-01	UBAP2L	ENST00000271877.7,ENST00000428931.1,ENST00000343815.6,ENST00000495676.1,ENST00000361546.2	chr1	154227311:154227366:154227627:154227802:154228158:154228231,	154227628	154227802	154227676	154227677	Frame_Shift_Ins	-	C	p.I653fs
UCEC	TCGA-BG-A0M3-01	ASH1L	ENST00000392403.3	chr1	155451201:155452240:155490890:155491409:155531943:155532086,	155490891	155491409	155491185	155491186	Frame_Shift_Ins	-	T	p.N42fs
UCEC	TCGA-BG-A0M3-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.V377fs
UCEC	TCGA-BG-A0M3-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.I85fs
UCEC	TCGA-BG-A0M3-01	C4BPA	ENST00000424088.1	chr1	207277722:207277775:207286345:207286512:207287444:207287630,	207286346	207286512	207286375	207286376	Frame_Shift_Ins	-	C	p.H2fs
UCEC	TCGA-BG-A0M3-01	C4BPA	ENST00000421786.1	chr1	207277722:207277775:207286243:207286512:207287444:207287630,	207286244	207286512	207286375	207286376	Frame_Shift_Ins	-	C	p.H2fs
UCEC	TCGA-BG-A0M3-01	RBM34	ENST00000366606.3,ENST00000447801.1,ENST00000468751.1,ENST00000476261.1,ENST00000408888.3	chr1	235318195:235318427:235323825:235323962:235324207:235324382,	235323826	235323962	235323875	235323876	Frame_Shift_Ins	-	T	p.K105fs
UCEC	TCGA-BG-A0M3-01	ADSS	ENST00000366535.3,ENST00000462358.1	chr1	244582195:244582216:244583471:244583598:244586136:244586218,	244583472	244583598	244583581	244583581	Frame_Shift_Del	A	-	p.I227fs
UCEC	TCGA-BG-A0M3-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763923	74763924	Frame_Shift_Ins	-	C	p.G275fs
UCEC	TCGA-BG-A0M3-01	USP39	ENST00000459775.1,ENST00000493829.1,ENST00000450066.2,ENST00000409766.3,ENST00000323701.6,ENST00000409470.1,ENST00000409025.1	chr2	85857843:85858069:85863175:85863253:85864491:85864559,	85863176	85863253	85863227	85863228	Frame_Shift_Ins	-	G	p.L334fs
UCEC	TCGA-BG-A0M3-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724115	230724116	Frame_Shift_Ins	-	T	p.K133fs
UCEC	TCGA-BG-A0M3-01	ADAMTS9	ENST00000481060.1,ENST00000295903.4,ENST00000498707.1	chr3	64527513:64527646:64532433:64532628:64536567:64536738,	64532434	64532628	64532502	64532503	Frame_Shift_Ins	-	G	p.P1665fs
UCEC	TCGA-BG-A0M3-01	EVC	ENST00000264956.6,ENST00000382674.2	chr4	5757990:5758089:5785278:5785491:5795334:5795444,	5785279	5785491	5785361	5785362	Frame_Shift_Ins	-	C	p.L549fs
UCEC	TCGA-BG-A0M3-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.R3454fs
UCEC	TCGA-BG-A0M3-01	FGG	ENST00000404648.3,ENST00000405164.1,ENST00000492082.1	chr4	155525324:155525506:155526048:155526218:155527856:155527974,	155526049	155526218	155526058	155526059	Frame_Shift_Ins	-	C	p.G430fs
UCEC	TCGA-BG-A0M3-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.E1158fs
UCEC	TCGA-BG-A0M3-01	RAI14	ENST00000265109.3,ENST00000506376.1,ENST00000515799.1,ENST00000503673.1,ENST00000508777.1,ENST00000428746.2,ENST00000397449.1	chr5	34812284:34812313:34813678:34813765:34814687:34814774,	34813679	34813765	34813722	34813723	Frame_Shift_Ins	-	A	p.P273fs
UCEC	TCGA-BG-A0M3-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833400	82833401	Frame_Shift_Ins	-	A	p.D1526fs
UCEC	TCGA-BG-A0M3-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127609531:127609660:127610258:127610375:127611729:127611852,	127610259	127610375	127610310	127610311	Frame_Shift_Ins	-	C	p.G2553fs
UCEC	TCGA-BG-A0M3-01	FBN2	ENST00000508053.1,ENST00000262464.4	chr5	127647576:127647645:127648325:127648487:127653840:127653963,	127648326	127648487	127648336	127648337	Frame_Shift_Ins	-	G	p.P1623fs
UCEC	TCGA-BG-A0M3-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242814	141242815	Frame_Shift_Ins	-	G	p.P1027fs
UCEC	TCGA-BG-A0M3-01	DCDC2	ENST00000378454.3	chr6	24178557:24178860:24205229:24205330:24278276:24278439,	24205230	24205330	24205282	24205283	Frame_Shift_Ins	-	C	p.A324fs
UCEC	TCGA-BG-A0M3-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
UCEC	TCGA-BG-A0M3-01	AHI1	ENST00000265602.6,ENST00000367800.4,ENST00000531788.1,ENST00000327035.6,ENST00000457866.2	chr6	135778631:135778851:135784262:135784444:135786951:135787511,	135784263	135784444	135784283	135784284	Frame_Shift_Ins	-	T	p.T304fs
UCEC	TCGA-BG-A0M3-01	TAB2	ENST00000286332.5,ENST00000367456.1,ENST00000538427.1	chr6	149691044:149691235:149699153:149700654:149718739:149718900,	149699154	149700654	149700166	149700167	Frame_Shift_Ins	-	C	p.S372fs
UCEC	TCGA-BG-A0M3-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485487	160485488	Frame_Shift_Ins	-	G	p.T1314fs
UCEC	TCGA-BG-A0M3-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975472	13975473	Frame_Shift_Ins	-	G	p.P138fs
UCEC	TCGA-BG-A0M3-01	POU6F2	ENST00000559001.1,ENST00000451021.1,ENST00000518318.2,ENST00000520104.1,ENST00000517348.1,ENST00000403058.1,ENST00000524147.1	chr7	39125460:39125631:39243833:39243925:39246990:39247139,	39243834	39243925	39243900	39243901	Frame_Shift_Ins	-	C	p.H86fs
UCEC	TCGA-BG-A0M3-01	POU6F2	ENST00000559001.1,ENST00000524147.1	chr7	39246990:39247219:39379240:39379614:39472675:39472882,	39379241	39379614	39379541	39379542	Frame_Shift_Ins	-	C	p.S271fs
UCEC	TCGA-BG-A0M3-01	AKAP9	ENST00000358100.2,ENST00000394534.2,ENST00000487258.1,ENST00000359028.2,ENST00000356239.3	chr7	91730169:91730370:91731907:91732140:91734991:91735077,	91731908	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3743fs
UCEC	TCGA-BG-A0M3-01	AKAP9	ENST00000463118.1	chr7	91730169:91730370:91732000:91732140:91734991:91735077,	91732001	91732140	91732038	91732039	Frame_Shift_Ins	-	G	p.M3743fs
UCEC	TCGA-BG-A0M3-01	BAIAP2L1	ENST00000005260.8	chr7	97937000:97937208:97939756:97939904:97941408:97941576,	97939757	97939904	97939853	97939854	Frame_Shift_Ins	-	G	p.P286fs
UCEC	TCGA-BG-A0M3-01	COG5	ENST00000393603.2,ENST00000347053.3,ENST00000297135.3	chr7	106921744:106921844:106924015:106924177:106938586:106938791,	106924016	106924177	106924075	106924076	Frame_Shift_Ins	-	G	p.P503fs
UCEC	TCGA-BG-A0M3-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173277	126173278	Frame_Shift_Ins	-	G	p.H720fs
UCEC	TCGA-BG-A0M3-01	CCDC136	ENST00000487361.1	chr7	128445901:128445955:128457811:128457918:128461852:128461939,128455851:128455985:128457811:128457918:128461852:128461939,128447413:128447599:128457811:128457918:128461852:128461939,	128457812	128457918	128457829	128457830	Frame_Shift_Ins	-	C	p.N1127fs
UCEC	TCGA-BG-A0M3-01	TRIM24	ENST00000343526.4,ENST00000415680.2	chr7	138258251:138258387:138261117:138261190:138262164:138262333,	138261118	138261190	138261142	138261143	Frame_Shift_Ins	-	C	p.H680fs
UCEC	TCGA-BG-A0M3-01	DOCK5	ENST00000467709.2,ENST00000276440.7	chr8	25266317:25266456:25267614:25267718:25268709:25269394,	25267615	25267718	25267670	25267671	Frame_Shift_Ins	-	C	p.P1820fs
UCEC	TCGA-BG-A0M3-01	ADAM32	ENST00000379907.4	chr8	39044427:39044564:39068662:39068843:39079128:39079221,	39068663	39068843	39068767	39068767	Frame_Shift_Del	A	-	p.Q386fs
UCEC	TCGA-BG-A0M3-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
UCEC	TCGA-BG-A0M3-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877089	16877090	Frame_Shift_Ins	-	G	p.Q3429fs
UCEC	TCGA-BG-A0M3-01	MLLT10	ENST00000377072.3,ENST00000446906.2,ENST00000307729.7,ENST00000377059.3	chr10	21959377:21959633:21962278:21962848:21970260:21970305,	21962279	21962848	21962451	21962452	Frame_Shift_Ins	-	G	p.E408fs
UCEC	TCGA-BG-A0M3-01	PIP4K2A	ENST00000323883.7,ENST00000376573.4,ENST00000545335.1	chr10	22828899:22829003:22830732:22830976:22839587:22839701,	22830733	22830976	22830827	22830828	Frame_Shift_Ins	-	G	p.P314fs
UCEC	TCGA-BG-A0M3-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832466	24832467	Frame_Shift_Ins	-	C	p.T1423fs
UCEC	TCGA-BG-A0M3-01	ANKRD26	ENST00000436985.2,ENST00000376070.3,ENST00000376087.4	chr10	27318214:27318285:27322153:27322306:27323724:27324681,	27322154	27322306	27322258	27322259	Frame_Shift_Ins	-	T	p.K1234fs
UCEC	TCGA-BG-A0M3-01	CSGALNACT2	ENST00000374464.1	chr10	43633933:43634015:43650344:43651258:43654162:43654379,	43650345	43651258	43650700	43650701	Frame_Shift_Ins	-	C	p.A35fs
UCEC	TCGA-BG-A0M3-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525559	75525560	Frame_Shift_Ins	-	C	p.V456fs
UCEC	TCGA-BG-A0M3-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
UCEC	TCGA-BG-A0M3-01	SLC18A2	ENST00000298472.5,ENST00000497497.1	chr10	119013915:119014008:119014787:119014877:119014989:119015033,	119014788	119014877	119014791	119014792	Frame_Shift_Ins	-	C	p.G235fs
UCEC	TCGA-BG-A0M3-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.P581fs
UCEC	TCGA-BG-A0M3-01	APIP	ENST00000278359.5,ENST00000527830.1,ENST00000532428.2,ENST00000395787.3	chr11	34904222:34904363:34904883:34905051:34909839:34909975,	34904884	34905051	34904908	34904909	Frame_Shift_Ins	-	C	p.E219fs
UCEC	TCGA-BG-A0M3-01	TMX2	ENST00000529403.1,ENST00000278422.4	chr11	57505079:57505140:57505825:57505902:57506135:57506242,57505307:57505498:57505825:57505902:57506135:57506242,	57505826	57505902	57505845	57505846	Frame_Shift_Ins	-	C	p.K128fs
UCEC	TCGA-BG-A0M3-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.A229fs
UCEC	TCGA-BG-A0M3-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.I539fs
UCEC	TCGA-BG-A0M3-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000443875.1,ENST00000402681.3,ENST00000541647.1	chr12	7170193:7170371:7171570:7171696:7172403:7172482,	7171571	7171696	7171652	7171653	Frame_Shift_Ins	-	C	p.C158fs
UCEC	TCGA-BG-A0M3-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306277	33306278	Frame_Shift_Ins	-	C	p.G721fs
UCEC	TCGA-BG-A0M3-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340958	41340959	Frame_Shift_Ins	-	G	p.P121fs
UCEC	TCGA-BG-A0M3-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679572	21679573	Frame_Shift_Ins	-	C	p.D277fs
UCEC	TCGA-BG-A0M3-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679572	21679573	Frame_Shift_Ins	-	C	p.D277fs
UCEC	TCGA-BG-A0M3-01	NOMO1	ENST00000287667.7	chr16	14978228:14978339:14980617:14980719:14982952:14983072,	14980618	14980719	14980694	14980695	Frame_Shift_Ins	-	C	p.F1100fs
UCEC	TCGA-BG-A0M3-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489924	20489925	Frame_Shift_Ins	-	C	p.L402fs
UCEC	TCGA-BG-A0M3-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798764	7798765	Frame_Shift_Ins	-	C	p.P596fs
UCEC	TCGA-BG-A0M3-01	CHD3	ENST00000470531.1	chr17	7810670:7810806:7810918:7811020:7811211:7811337,7810670:7810806:7810918:7811020:7811208:7811337,	7810919	7811020	7810942	7810943	Frame_Shift_Ins	-	G	p.R1709fs
UCEC	TCGA-BG-A0M3-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248730	44248731	Frame_Shift_Ins	-	C	p.G260fs
UCEC	TCGA-BG-A0M3-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.Q90fs
UCEC	TCGA-BG-A0M3-01	THOC1	ENST00000579891.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6	chr18	224923:224994:225088:225139:225336:225403,	225089	225139	225118	225119	Frame_Shift_Ins	-	G	p.P369fs
UCEC	TCGA-BG-A0M3-01	TTC39C	ENST00000317571.3,ENST00000578150.1	chr18	21594876:21595002:21644103:21644152:21645975:21646104,	21644104	21644152	21644145	21644146	Frame_Shift_Ins	-	T	p.S70fs
UCEC	TCGA-BG-A0M3-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.V81fs
UCEC	TCGA-BG-A0M3-01	SLPI	ENST00000338380.2	chr20	43880992:43881060:43881642:43881792:43882215:43882374,	43881643	43881792	43881730	43881731	Frame_Shift_Ins	-	G	p.P102fs
UCEC	TCGA-BG-A0M3-01	SYCP2	ENST00000357552.3,ENST00000371001.2	chr20	58442765:58442902:58443467:58443623:58443889:58443935,	58443468	58443623	58443507	58443508	Frame_Shift_Ins	-	T	p.K1316fs
UCEC	TCGA-BG-A0M3-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073335	33073336	Frame_Shift_Ins	-	G	p.P250fs
UCEC	TCGA-BG-A0M3-01	TBC1D22A	ENST00000380995.1,ENST00000407381.3,ENST00000394449.2	chr22	47169823:47170132:47188416:47188473:47189397:47189513,47158583:47158745:47188416:47188473:47189397:47189513,	47188417	47188473	47188443	47188444	Frame_Shift_Ins	-	C	p.H30fs
UCEC	TCGA-BG-A0M3-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.P23fs
UCEC	TCGA-BG-A0M4-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088659	27088659	Frame_Shift_Del	C	-	p.N756fs
UCEC	TCGA-BG-A0M4-01	ZNF644	ENST00000370440.1,ENST00000337393.5	chr1	91403041:91403647:91403828:91406866:91447866:91447927,	91403829	91406866	91404598	91404604	Frame_Shift_Del	AGAATTT	-	p.L769fs
UCEC	TCGA-BG-A0M4-01	ATAD2B	ENST00000238789.5,ENST00000366438.2	chr2	24080284:24080373:24086250:24086425:24087678:24087794,	24086251	24086425	24086326	24086326	Frame_Shift_Del	A	-	p.F468fs
UCEC	TCGA-BG-A0M4-01	IL17RB	ENST00000475124.1,ENST00000288167.3	chr3	53886897:53887024:53889320:53889368:53890870:53891004,	53889321	53889368	53889347	53889347	Frame_Shift_Del	A	-	p.K170fs
UCEC	TCGA-BG-A0M4-01	PHLDB2	ENST00000481953.1,ENST00000498699.1,ENST00000393923.3,ENST00000393925.3,ENST00000478733.1,ENST00000431670.2,ENST00000412622.1	chr3	111659381:111659492:111664114:111664204:111672776:111672876,111659381:111659492:111664114:111664204:111667778:111667922,	111664115	111664204	111664162	111664163	Frame_Shift_Ins	-	G	p.S815fs
UCEC	TCGA-BG-A0M4-01	PRKCI	ENST00000483697.2,ENST00000476635.1,ENST00000485837.1,ENST00000295797.4	chr3	170011170:170011296:170013698:170013778:170015091:170015116,	170013699	170013778	170013742	170013742	Frame_Shift_Del	A	-	p.V487fs
UCEC	TCGA-BG-A0M4-01	MCCC1	ENST00000486226.1	chr3	182804480:182804576:182810196:182810333:182812346:182812393,182808723:182808819:182810196:182810333:182812346:182812393,	182810197	182810333	182810259	182810260	Frame_Shift_Ins	-	T	p.K70fs
UCEC	TCGA-BG-A0M4-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409fs
UCEC	TCGA-BG-A0M4-01	SLC30A5	ENST00000396591.3	chr5	68419169:68419252:68423830:68423959:68425273:68425953,	68423831	68423959	68423872	68423872	Frame_Shift_Del	T	-	p.H680fs
UCEC	TCGA-BG-A0M4-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327822	16327823	Frame_Shift_Ins	-	G	p.P240fs
UCEC	TCGA-BG-A0M4-01	ZDHHC14	ENST00000341375.8,ENST00000359775.5,ENST00000414563.2	chr6	158014040:158014178:158049380:158049518:158053865:158053914,	158049381	158049518	158049440	158049440	Frame_Shift_Del	T	-	p.F209fs
UCEC	TCGA-BG-A0M4-01	OGDH	ENST00000222673.5,ENST00000444676.1,ENST00000419661.1,ENST00000443864.2	chr7	44664060:44664164:44684925:44685117:44687255:44687358,	44684926	44685117	44684936	44684936	Frame_Shift_Del	T	-	p.I78fs
UCEC	TCGA-BG-A0M4-01	DDC	ENST00000430300.1,ENST00000444124.2,ENST00000426377.1,ENST00000357936.5,ENST00000431062.1,ENST00000494914.1,ENST00000444733.1	chr7	50526267:50526541:50530910:50531129:50534911:50535013,	50530911	50531129	50531075	50531075	Frame_Shift_Del	T	-	p.I433fs
UCEC	TCGA-BG-A0M4-01	VPS13B	ENST00000358544.2,ENST00000395996.1,ENST00000357162.2	chr8	100589717:100589861:100654038:100654726:100673581:100673719,	100654039	100654726	100654346	100654346	Frame_Shift_Del	A	-	p.E1868fs
UCEC	TCGA-BG-A0M4-01	ANKS6	ENST00000444472.1,ENST00000375019.2,ENST00000375018.1,ENST00000540940.1,ENST00000353234.4	chr9	101507840:101507957:101513310:101513378:101518701:101518885,	101513311	101513378	101513323	101513323	Frame_Shift_Del	A	-	p.F794fs
UCEC	TCGA-BG-A0M4-01	MASTL	ENST00000342386.6,ENST00000375946.4	chr10	27456030:27456203:27458872:27460012:27462046:27462188,27456030:27456203:27458872:27460012:27462049:27462188,	27458873	27460012	27459254	27459254	Frame_Shift_Del	A	-	p.K456fs
UCEC	TCGA-BG-A0M4-01	HPX	ENST00000265983.3	chr11	6458278:6458407:6458669:6458882:6459585:6459706,	6458670	6458882	6458678	6458678	Frame_Shift_Del	G	-	p.P232fs
UCEC	TCGA-BG-A0M4-01	ARAP1	ENST00000359373.5,ENST00000455638.2,ENST00000334211.8,ENST00000426523.1,ENST00000393609.3,ENST00000429686.1	chr11	72423482:72423613:72424220:72424288:72425196:72425275,	72424221	72424288	72424247	72424247	Frame_Shift_Del	C	-	p.A241fs
UCEC	TCGA-BG-A0M4-01	FAM118B	ENST00000360194.4,ENST00000529731.1	chr11	126099119:126099188:126104889:126104982:126110686:126110939,126081671:126081725:126104889:126104982:126110686:126110939,	126104890	126104982	126104972	126104972	Frame_Shift_Del	A	-	p.K30fs
UCEC	TCGA-BG-A0M4-01	SLC6A12	ENST00000545058.1,ENST00000359674.4,ENST00000424061.2,ENST00000428720.1,ENST00000536824.1,ENST00000397296.2	chr12	300233:300377:301643:301814:302442:302543,	301644	301814	301777	301778	Frame_Shift_Ins	-	G	p.L523fs
UCEC	TCGA-BG-A0M4-01	SCYL2	ENST00000360820.2	chr12	100661026:100661174:100676720:100676925:100685280:100685438,100661161:100661570:100676720:100676925:100685280:100685438,	100676721	100676925	100676906	100676907	Frame_Shift_Ins	-	A	p.T53fs
UCEC	TCGA-BG-A0M4-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306277	33306278	Frame_Shift_Ins	-	C	p.G721fs
UCEC	TCGA-BG-A0M4-01	NHLRC3	ENST00000470258.1,ENST00000379600.3	chr13	39613700:39613848:39616241:39616442:39618226:39618318,	39616242	39616442	39616313	39616313	Frame_Shift_Del	A	-	p.K153fs
UCEC	TCGA-BG-A0M4-01	PAPLN	ENST00000340738.5,ENST00000216658.5,ENST00000555445.1,ENST00000555123.1,ENST00000554301.1,ENST00000427855.1,ENST00000381166.3	chr14	73720461:73720669:73721220:73721403:73721584:73721726,	73721221	73721403	73721358	73721358	Frame_Shift_Del	C	-	p.C480fs
UCEC	TCGA-BG-A0M4-01	LITAF	ENST00000576036.1,ENST00000570798.1,ENST00000570904.1,ENST00000571688.1,ENST00000574763.1,ENST00000339430.5,ENST00000571627.1	chr16	11643566:11643601:11647388:11647545:11650366:11650591,	11647389	11647545	11647503	11647503	Frame_Shift_Del	A	-	p.L88fs
UCEC	TCGA-BG-A0M4-01	LITAF	ENST00000573332.1	chr16	11643566:11643601:11647388:11647604:11650366:11650591,	11647389	11647604	11647503	11647503	Frame_Shift_Del	A	-	p.L88fs
UCEC	TCGA-BG-A0M4-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67646012	67646013	Frame_Shift_Ins	-	AC	p.N314fs
UCEC	TCGA-BG-A0M4-01	ABR	ENST00000544583.2	chr17	1003876:1003975:1028517:1028702:1090093:1090616,	1028518	1028702	1028559	1028559	Frame_Shift_Del	C	-	p.D69fs
UCEC	TCGA-BG-A0M4-01	TOP3A	ENST00000321105.5,ENST00000542570.1,ENST00000583804.2,ENST00000584582.1,ENST00000580095.1,ENST00000582981.1	chr17	18194155:18194341:18195958:18196166:18198016:18198099,	18195959	18196166	18196068	18196069	Frame_Shift_Ins	-	C	p.A391fs
UCEC	TCGA-BG-A0M4-01	CCT6B	ENST00000314144.5,ENST00000421975.3	chr17	33281444:33281618:33285578:33285713:33286605:33286669,	33285579	33285713	33285678	33285678	Frame_Shift_Del	T	-	p.K79fs
UCEC	TCGA-BG-A0M4-01	TOP2A	ENST00000423485.1	chr17	38551700:38551791:38552534:38552717:38554809:38554893,	38552535	38552717	38552660	38552661	Frame_Shift_Ins	-	C	p.G1198fs
UCEC	TCGA-BG-A0M4-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.G606fs
UCEC	TCGA-BG-A0M4-01	ZNF652	ENST00000508237.1	chr17	47366569:47369057:47375467:47376286:47388673:47388818,	47375468	47376286	47375962	47375963	Frame_Shift_Ins	-	G	p.H545fs
UCEC	TCGA-BG-A0M4-01	MAP3K3	ENST00000579585.1,ENST00000584573.1,ENST00000361733.3,ENST00000577597.1,ENST00000577395.1,ENST00000361357.3	chr17	61735153:61735267:61744299:61744420:61759125:61759259,	61744300	61744420	61744386	61744387	Frame_Shift_Ins	-	C	p.Q156fs
UCEC	TCGA-BG-A0M4-01	ICAM1	ENST00000588645.1	chr19	10381795:10381902:10385440:10385704:10394156:10394170,	10385441	10385704	10385568	10385569	Frame_Shift_Ins	-	A	p.P65fs
UCEC	TCGA-BG-A0M4-01	DNM2	ENST00000355667.6,ENST00000585892.1,ENST00000359692.6	chr19	10906736:10906875:10909161:10909248:10912963:10913034,	10909162	10909248	10909173	10909173	Frame_Shift_Del	C	-	p.Y449fs
UCEC	TCGA-BG-A0M4-01	SYMPK	ENST00000593504.1,ENST00000600237.1,ENST00000245934.7,ENST00000599814.1,ENST00000599460.1	chr19	46333311:46333462:46334641:46334846:46338335:46338486,	46334642	46334846	46334705	46334706	Frame_Shift_Ins	-	G	p.L512fs
UCEC	TCGA-BG-A0M4-01	EPN1	ENST00000085079.7,ENST00000270460.6,ENST00000411543.2	chr19	56204319:56204403:56206091:56206349:56206513:56206631,	56206092	56206349	56206220	56206220	Frame_Shift_Del	C	-	p.P465fs
UCEC	TCGA-BG-A0M4-01	IFT52	ENST00000373039.4,ENST00000373030.3	chr20	42233641:42233713:42242489:42242616:42247579:42247666,	42242490	42242616	42242511	42242511	Frame_Shift_Del	T	-	p.P169fs
UCEC	TCGA-BG-A0M4-01	ARFGEF2	ENST00000371917.4	chr20	47585683:47585814:47587656:47587891:47588862:47588962,	47587657	47587891	47587877	47587877	Frame_Shift_Del	A	-	p.K471fs
UCEC	TCGA-BG-A0M4-01	COL6A1	ENST00000361866.3	chr21	47409521:47409566:47409665:47409692:47410171:47410198,	47409666	47409692	47409670	47409670	Frame_Shift_Del	A	-	p.E303fs
UCEC	TCGA-BG-A0M4-01	SLC25A43	ENST00000488158.1	chrX	118533371:118533641:118540422:118540664:118585971:118586106,118533371:118533641:118540422:118540664:118544152:118544325,	118540423	118540664	118540530	118540531	Frame_Shift_Ins	-	T	p.D128fs
UCEC	TCGA-BG-A0M4-01	SLC25A43	ENST00000488158.1	chrX	118533371:118533641:118540422:118540664:118585971:118586106,118533371:118533641:118540422:118540664:118544152:118544325,	118540423	118540664	118540581	118540581	Frame_Shift_Del	G	-	p.R145fs
UCEC	TCGA-BG-A0M6-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683490	29683491	Frame_Shift_Ins	-	T	p.S2543fs
UCEC	TCGA-BG-A0M8-01	ATP13A3	ENST00000256031.4,ENST00000439040.1	chr3	194146070:194146258:194147803:194147981:194149573:194149646,	194147804	194147981	194147850	194147850	Frame_Shift_Del	A	-	p.W1027fs
UCEC	TCGA-BG-A0M8-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581488	17581489	Frame_Shift_Ins	-	T	p.I37fs
UCEC	TCGA-BG-A0M9-01	FAM151A	ENST00000371304.2,ENST00000302250.2	chr1	55080372:55080532:55081692:55081845:55085536:55085680,	55081693	55081845	55081756	55081757	Frame_Shift_Ins	-	G	p.P117fs
UCEC	TCGA-BG-A0M9-01	CDC14A	ENST00000544534.1,ENST00000542213.1,ENST00000361544.6,ENST00000455467.1,ENST00000370124.3,ENST00000370125.2,ENST00000336454.3	chr1	100856287:100856380:100889777:100889857:100905487:100905554,	100889778	100889857	100889836	100889837	Frame_Shift_Ins	-	C	p.N123fs
UCEC	TCGA-BG-A0M9-01	CDC14A	ENST00000370125.2,ENST00000336454.3	chr1	100963640:100963763:100964484:100964818:100983806:100983849,	100964485	100964818	100964709	100964710	Frame_Shift_Ins	-	C	p.S549fs
UCEC	TCGA-BG-A0M9-01	OVGP1	ENST00000369732.3,ENST00000540696.1	chr1	111957919:111957966:111958944:111959080:111962231:111962348,	111958945	111959080	111959046	111959047	Frame_Shift_Ins	-	C	p.A352fs
UCEC	TCGA-BG-A0M9-01	ARNT	ENST00000515192.1,ENST00000505755.1,ENST00000358595.5	chr1	150788734:150788882:150789263:150789366:150789557:150789678,	150789264	150789366	150789282	150789283	Frame_Shift_Ins	-	G	p.R595fs
UCEC	TCGA-BG-A0M9-01	COPA	ENST00000368069.3,ENST00000241704.7	chr1	160293220:160293320:160295332:160295442:160302237:160302347,	160295333	160295442	160295426	160295427	Frame_Shift_Ins	-	T	p.N171fs
UCEC	TCGA-BG-A0M9-01	ATP2B4	ENST00000391954.2,ENST00000357681.5,ENST00000367218.3,ENST00000367219.3,ENST00000341360.2	chr1	203651936:203652526:203667284:203667482:203668587:203668845,	203667285	203667482	203667345	203667346	Frame_Shift_Ins	-	C	p.I85fs
UCEC	TCGA-BG-A0M9-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389836	11389837	Frame_Shift_Ins	-	A	p.W138fs
UCEC	TCGA-BG-A0M9-01	HS1BP3	ENST00000402541.1,ENST00000304031.3	chr2	20838195:20838412:20840732:20840940:20845099:20845255,	20840733	20840940	20840863	20840864	Frame_Shift_Ins	-	G	p.P92fs
UCEC	TCGA-BG-A0M9-01	SPAG16	ENST00000374309.3,ENST00000331683.5,ENST00000452556.1,ENST00000451561.1,ENST00000406979.2,ENST00000480494.1	chr2	214878674:214878801:214972919:214972985:215013863:215013990,	214972920	214972985	214972971	214972972	Frame_Shift_Ins	-	T	p.I527fs
UCEC	TCGA-BG-A0M9-01	TRIP12	ENST00000283943.5,ENST00000479037.1	chr2	230705537:230705643:230723487:230724290:230744697:230744844,	230723488	230724290	230724115	230724116	Frame_Shift_Ins	-	T	p.K133fs
UCEC	TCGA-BG-A0M9-01	RAD18	ENST00000415439.1,ENST00000473069.1,ENST00000264926.2	chr3	8940577:8940731:8944063:8944204:8953995:8954056,	8944064	8944204	8944120	8944121	Frame_Shift_Ins	-	T	p.T371fs
UCEC	TCGA-BG-A0M9-01	RBM6	ENST00000266022.4,ENST00000425608.1	chr3	50000008:50000118:50004902:50006181:50009491:50009581,	50004903	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
UCEC	TCGA-BG-A0M9-01	RBM6	ENST00000443081.1,ENST00000454079.1	chr3	50000008:50000118:50004630:50006181:50009491:50009581,	50004631	50006181	50005144	50005145	Frame_Shift_Ins	-	G	p.R96fs
UCEC	TCGA-BG-A0M9-01	ADAMTS9	ENST00000459780.1,ENST00000295903.4,ENST00000498707.1,ENST00000482490.1,ENST00000475557.1	chr3	64644177:64644467:64666876:64667039:64672243:64672286,	64666877	64667039	64666918	64666919	Frame_Shift_Ins	-	G	p.Q213fs
UCEC	TCGA-BG-A0M9-01	ANK2	ENST00000394537.3,ENST00000504454.1,ENST00000357077.4,ENST00000506722.1,ENST00000510275.2,ENST00000503423.1,ENST00000509550.1,ENST00000264366.6,ENST00000514960.1	chr4	114262867:114263072:114264172:114264298:114267055:114267178,	114264173	114264298	114264255	114264256	Frame_Shift_Ins	-	T	p.S1402fs
UCEC	TCGA-BG-A0M9-01	FGG	ENST00000404648.3,ENST00000405164.1,ENST00000492082.1	chr4	155525324:155525506:155526048:155526218:155527856:155527974,	155526049	155526218	155526058	155526059	Frame_Shift_Ins	-	C	p.G430fs
UCEC	TCGA-BG-A0M9-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.E1158fs
UCEC	TCGA-BG-A0M9-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36986119	36986120	Frame_Shift_Ins	-	G	p.L946fs
UCEC	TCGA-BG-A0M9-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466588	65466589	Frame_Shift_Del	AG	-	p.R433fs
UCEC	TCGA-BG-A0M9-01	SSBP2	ENST00000513785.1,ENST00000504985.1,ENST00000510060.1,ENST00000505980.1,ENST00000320672.4,ENST00000504136.1,ENST00000515395.1,ENST00000514493.1	chr5	80716291:80716352:80724403:80724502:80733248:80733277,	80724404	80724502	80724434	80724435	Frame_Shift_Ins	-	C	p.G350fs
UCEC	TCGA-BG-A0M9-01	DCDC2	ENST00000378454.3	chr6	24178557:24178860:24205229:24205330:24278276:24278439,	24205230	24205330	24205282	24205283	Frame_Shift_Ins	-	C	p.A324fs
UCEC	TCGA-BG-A0M9-01	CEP85L	ENST00000392500.3,ENST00000434604.1,ENST00000368491.3,ENST00000419517.2,ENST00000360290.3,ENST00000368488.5	chr6	118844964:118845083:118886691:118887479:118953615:118953774,	118886692	118887479	118887293	118887294	Frame_Shift_Ins	-	C	p.E143fs
UCEC	TCGA-BG-A0M9-01	POU6F2	ENST00000559001.1,ENST00000451021.1,ENST00000518318.2,ENST00000520104.1,ENST00000517348.1,ENST00000403058.1,ENST00000524147.1	chr7	39125460:39125631:39243833:39243925:39246990:39247139,	39243834	39243925	39243900	39243901	Frame_Shift_Ins	-	C	p.H86fs
UCEC	TCGA-BG-A0M9-01	CASD1	ENST00000297273.4	chr7	94174856:94175013:94176407:94176487:94178844:94178946,	94176408	94176487	94176468	94176469	Frame_Shift_Ins	-	T	p.C565fs
UCEC	TCGA-BG-A0M9-01	CCDC136	ENST00000487361.1	chr7	128445901:128445955:128457811:128457918:128461852:128461939,128455851:128455985:128457811:128457918:128461852:128461939,128447413:128447599:128457811:128457918:128461852:128461939,	128457812	128457918	128457829	128457830	Frame_Shift_Ins	-	C	p.N1127fs
UCEC	TCGA-BG-A0M9-01	TRIM24	ENST00000343526.4,ENST00000415680.2	chr7	138258251:138258387:138261117:138261190:138262164:138262333,	138261118	138261190	138261142	138261143	Frame_Shift_Ins	-	C	p.H680fs
UCEC	TCGA-BG-A0M9-01	ARFGEF1	ENST00000520381.1,ENST00000518230.1,ENST00000262215.3	chr8	68123717:68123850:68128824:68128897:68130016:68130155,	68128825	68128897	68128855	68128856	Frame_Shift_Ins	-	G	p.P1552fs
UCEC	TCGA-BG-A0M9-01	RAD21	ENST00000518055.1,ENST00000523986.1,ENST00000297338.2	chr8	117859572:117859930:117861184:117861268:117862856:117863000,	117861185	117861268	117861248	117861249	Frame_Shift_Ins	-	C	p.G547fs
UCEC	TCGA-BG-A0M9-01	COL14A1	ENST00000537875.1,ENST00000247781.3,ENST00000297848.3,ENST00000309791.4,ENST00000432943.2,ENST00000498051.2,ENST00000434620.1	chr8	121237326:121237453:121238865:121239005:121239458:121239591,	121238866	121239005	121238987	121238988	Frame_Shift_Ins	-	G	p.Y662fs
UCEC	TCGA-BG-A0M9-01	CNTRL	ENST00000373855.1,ENST00000238341.5,ENST00000373847.1,ENST00000373850.1	chr9	123910949:123911139:123912447:123912761:123914762:123914971,	123912448	123912761	123912689	123912690	Frame_Shift_Ins	-	C	p.P1297fs
UCEC	TCGA-BG-A0M9-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877089	16877090	Frame_Shift_Ins	-	G	p.Q3429fs
UCEC	TCGA-BG-A0M9-01	CSGALNACT2	ENST00000374464.1	chr10	43633933:43634015:43650344:43651258:43654162:43654379,	43650345	43651258	43650700	43650701	Frame_Shift_Ins	-	C	p.A35fs
UCEC	TCGA-BG-A0M9-01	SEC24C	ENST00000411652.2,ENST00000465076.1,ENST00000339365.2,ENST00000345254.4	chr10	75525292:75525347:75525557:75525673:75525843:75525968,	75525558	75525673	75525559	75525560	Frame_Shift_Ins	-	C	p.V456fs
UCEC	TCGA-BG-A0M9-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310572	103310573	Frame_Shift_Ins	-	C	p.E591fs
UCEC	TCGA-BG-A0M9-01	PPRC1	ENST00000278070.2,ENST00000370012.1	chr10	103904776:103904847:103906428:103907149:103908128:103908278,	103906429	103907149	103906659	103906660	Frame_Shift_Ins	-	C	p.T1304fs
UCEC	TCGA-BG-A0M9-01	EIF4G2	ENST00000339995.5,ENST00000525681.1,ENST00000396525.2,ENST00000534272.1,ENST00000532383.1,ENST00000526148.1,ENST00000528839.1	chr11	10820538:10820660:10820759:10820971:10821098:10821156,	10820760	10820971	10820934	10820935	Frame_Shift_Ins	-	G	p.P581fs
UCEC	TCGA-BG-A0M9-01	TMX2	ENST00000529403.1,ENST00000278422.4	chr11	57505079:57505140:57505825:57505902:57506135:57506242,57505307:57505498:57505825:57505902:57506135:57506242,	57505826	57505902	57505845	57505846	Frame_Shift_Ins	-	C	p.K128fs
UCEC	TCGA-BG-A0M9-01	DDB1	ENST00000537120.1,ENST00000540166.1,ENST00000539712.1,ENST00000301764.7,ENST00000535174.1,ENST00000543162.1	chr11	61091555:61091609:61093082:61093180:61094250:61094365,	61093083	61093180	61093159	61093160	Frame_Shift_Ins	-	C	p.A229fs
UCEC	TCGA-BG-A0M9-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76873165:76873376:76873898:76874034:76877101:76877208,	76873899	76874034	76873960	76873961	Frame_Shift_Ins	-	C	p.I539fs
UCEC	TCGA-BG-A0M9-01	RSF1	ENST00000308488.6,ENST00000526324.1,ENST00000360355.2	chr11	77409531:77409738:77411765:77413540:77436589:77436725,	77411766	77413540	77412023	77412024	Frame_Shift_Ins	-	G	p.P750fs
UCEC	TCGA-BG-A0M9-01	TMEM45B	ENST00000527754.1,ENST00000524567.1,ENST00000281441.3	chr11	129722369:129722555:129724504:129724711:129725602:129725787,	129724505	129724711	129724606	129724607	Frame_Shift_Ins	-	T	p.L94fs
UCEC	TCGA-BG-A0M9-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924042	6924043	Frame_Shift_Ins	-	G	p.Q164fs
UCEC	TCGA-BG-A0M9-01	C1S	ENST00000406697.1,ENST00000328916.3,ENST00000360817.5,ENST00000443875.1,ENST00000402681.3,ENST00000541647.1	chr12	7170193:7170371:7171570:7171696:7172403:7172482,	7171571	7171696	7171652	7171653	Frame_Shift_Ins	-	C	p.C158fs
UCEC	TCGA-BG-A0M9-01	CLEC4A	ENST00000360500.3	chr12	8278156:8278273:8281859:8281958:8288180:8288332,8276507:8276556:8281859:8281958:8288180:8288332,	8281860	8281958	8281937	8281937	Frame_Shift_Del	A	-	p.K93fs
UCEC	TCGA-BG-A0M9-01	RARG	ENST00000425354.2,ENST00000394426.1	chr12	53609429:53609578:53621145:53621471:53624952:53625016,	53621146	53621471	53621292	53621293	Frame_Shift_Ins	-	C	p.A13fs
UCEC	TCGA-BG-A0M9-01	MYBPC1	ENST00000547405.1,ENST00000547509.1,ENST00000392934.3,ENST00000553190.1,ENST00000541119.1,ENST00000361685.2,ENST00000536007.1,ENST00000361466.2,ENST00000551300.1,ENST00000545503.2	chr12	102056135:102056324:102057203:102057338:102061509:102061677,	102057204	102057338	102057273	102057274	Frame_Shift_Ins	-	C	p.R739fs
UCEC	TCGA-BG-A0M9-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306277	33306278	Frame_Shift_Ins	-	C	p.G721fs
UCEC	TCGA-BG-A0M9-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340958	41340959	Frame_Shift_Ins	-	G	p.P121fs
UCEC	TCGA-BG-A0M9-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679572	21679573	Frame_Shift_Ins	-	C	p.D277fs
UCEC	TCGA-BG-A0M9-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679572	21679573	Frame_Shift_Ins	-	C	p.D277fs
UCEC	TCGA-BG-A0M9-01	RALGAPA1	ENST00000553892.1,ENST00000554573.1,ENST00000554259.1,ENST00000382366.3,ENST00000258840.6,ENST00000389698.3,ENST00000307138.6	chr14	36041765:36041924:36064839:36064995:36074791:36074915,	36064840	36064995	36064948	36064949	Frame_Shift_Ins	-	T	p.N1861fs
UCEC	TCGA-BG-A0M9-01	HERC2	ENST00000261609.7	chr15	28478579:28478707:28478809:28478942:28479215:28479430,	28478810	28478942	28478873	28478874	Frame_Shift_Ins	-	G	p.P1429fs
UCEC	TCGA-BG-A0M9-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000561442.1,ENST00000559771.1	chr15	63824845:63824906:63829223:63829355:63845913:63845932,	63829224	63829355	63829241	63829242	Frame_Shift_Ins	-	A	p.A57fs
UCEC	TCGA-BG-A0M9-01	ACSM2A	ENST00000536134.1,ENST00000575690.1,ENST00000575558.1,ENST00000219054.6,ENST00000572843.1,ENST00000417235.2,ENST00000573854.1,ENST00000570698.1,ENST00000576101.1,ENST00000396104.2	chr16	20488690:20488771:20489897:20489999:20491894:20492022,	20489898	20489999	20489924	20489925	Frame_Shift_Ins	-	C	p.L402fs
UCEC	TCGA-BG-A0M9-01	POLR3E	ENST00000359210.4	chr16	22337081:22337599:22339830:22339908:22343380:22343506,22337081:22337599:22339830:22339908:22344964:22345017,	22339831	22339908	22339833	22339834	Frame_Shift_Ins	-	C	p.F623fs
UCEC	TCGA-BG-A0M9-01	C16orf87	ENST00000285697.4,ENST00000564250.1	chr16	46836914:46836982:46843514:46843697:46858297:46858394,	46843515	46843697	46843530	46843531	Frame_Shift_Ins	-	T	p.K110fs
UCEC	TCGA-BG-A0M9-01	CHD3	ENST00000470531.1	chr17	7810670:7810806:7810918:7811020:7811211:7811337,7810670:7810806:7810918:7811020:7811208:7811337,	7810919	7811020	7810942	7810943	Frame_Shift_Ins	-	G	p.R1709fs
UCEC	TCGA-BG-A0M9-01	PRPSAP2	ENST00000395656.2,ENST00000268835.2,ENST00000574451.1,ENST00000419071.2,ENST00000536323.1,ENST00000492129.1	chr17	18827226:18827297:18832123:18832270:18833852:18834047,	18832124	18832270	18832235	18832236	Frame_Shift_Ins	-	C	p.A306fs
UCEC	TCGA-BG-A0M9-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683557	29683558	Frame_Shift_Ins	-	C	p.T2565fs
UCEC	TCGA-BG-A0M9-01	ABCC3	ENST00000505699.1,ENST00000502426.1,ENST00000285238.8	chr17	48745795:48745878:48746213:48746280:48746500:48746627,	48746214	48746280	48746263	48746264	Frame_Shift_Ins	-	C	p.L640fs
UCEC	TCGA-BG-A0M9-01	CA10	ENST00000570565.1,ENST00000340813.6,ENST00000451037.2,ENST00000285273.4,ENST00000442502.2,ENST00000575181.1,ENST00000571371.1	chr17	49824992:49825178:50008349:50008492:50149678:50149753,	50008350	50008492	50008356	50008357	Frame_Shift_Ins	-	C	p.G97fs
UCEC	TCGA-BG-A0M9-01	FAM104A	ENST00000405159.3	chr17	71208816:71208879:71223303:71223403:71228224:71228459,	71223304	71223403	71223356	71223357	Frame_Shift_Ins	-	G	p.Q90fs
UCEC	TCGA-BG-A0M9-01	THOC1	ENST00000579891.1,ENST00000578529.1,ENST00000580038.1,ENST00000261600.6	chr18	224923:224994:225088:225139:225336:225403,	225089	225139	225118	225119	Frame_Shift_Ins	-	G	p.P369fs
UCEC	TCGA-BG-A0M9-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246441	56246442	Frame_Shift_Ins	-	C	p.G522fs
UCEC	TCGA-BG-A0M9-01	MAST3	ENST00000262811.6,ENST00000608648.1	chr19	18232662:18232732:18233482:18233561:18234026:18234184,	18233483	18233561	18233549	18233553	Frame_Shift_Del	CTCCA	-	p.S100fs
UCEC	TCGA-BG-A0M9-01	ZNF90	ENST00000418063.2	chr19	20188845:20188944:20216029:20216125:20235814:20235952,20215047:20215174:20216029:20216125:20228589:20228853,	20216030	20216125	20216075	20216076	Frame_Shift_Ins	-	A	p.G59fs
UCEC	TCGA-BG-A0M9-01	C19orf47	ENST00000392035.2,ENST00000582006.1,ENST00000582783.1	chr19	40832315:40832393:40834319:40834457:40839757:40839836,	40834320	40834457	40834398	40834399	Frame_Shift_Ins	-	G	p.P157fs
UCEC	TCGA-BG-A0M9-01	CST1	ENST00000398402.1	chr20	23728511:23728536:23729652:23729766:23731275:23731535,	23729653	23729766	23729753	23729754	Frame_Shift_Ins	-	C	p.V81fs
UCEC	TCGA-BG-A0M9-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
UCEC	TCGA-BG-A0M9-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
UCEC	TCGA-BG-A0M9-01	DMD	ENST00000361471.4,ENST00000359836.1,ENST00000474231.1,ENST00000378723.3,ENST00000358062.2,ENST00000378702.4,ENST00000378707.3,ENST00000357033.4,ENST00000378677.2	chrX	31165391:31165635:31187559:31187718:31190464:31190530,	31187560	31187718	31187659	31187660	Frame_Shift_Ins	-	G	p.L3485fs
UCEC	TCGA-BG-A0M9-01	DRP2	ENST00000402866.1,ENST00000395209.3,ENST00000372916.4,ENST00000541709.1,ENST00000538510.1	chrX	100503502:100503588:100505411:100505569:100505905:100506072,	100505412	100505569	100505524	100505525	Frame_Shift_Ins	-	G	p.F551fs
UCEC	TCGA-BG-A0M9-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.P23fs
UCEC	TCGA-BG-A0MC-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685279	89685279	Frame_Shift_Del	T	-	p.D58fs
UCEC	TCGA-BG-A0MC-01	SLC25A39	ENST00000537904.2,ENST00000377095.5,ENST00000590194.1,ENST00000225308.8,ENST00000586016.1	chr17	42397989:42398099:42398425:42398599:42398801:42398926,	42398426	42398599	42398525	42398525	Frame_Shift_Del	C	-	p.E198fs
UCEC	TCGA-BG-A0MG-01	NBEAL2	ENST00000383740.2,ENST00000450053.3	chr3	47040206:47040369:47040448:47040607:47040804:47040964,	47040449	47040607	47040587	47040600	Frame_Shift_Del	CTGCCCGATCGAGT	-	p.L1175fs
UCEC	TCGA-BG-A0MG-01	GSK3B	ENST00000264235.8	chr3	119545547:119545702:119582265:119582452:119595259:119595355,119562101:119562200:119582265:119582452:119595259:119595355,	119582266	119582452	119582341	119582342	Frame_Shift_Ins	-	A	p.F340fs
UCEC	TCGA-BG-A0MG-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510225	195510226	Frame_Shift_Ins	-	G	p.T2742fs
UCEC	TCGA-BG-A0MG-01	XPNPEP1	ENST00000443078.1	chr10	111651479:111651584:111652769:111652833:111667448:111667573,111651479:111651584:111652769:111652833:111674768:111674833,	111652770	111652833	111652787	111652788	Frame_Shift_Ins	-	CAGAGACAAAAGCCCGCCG	p.G98fs
UCEC	TCGA-BG-A0MG-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1265592	1265592	Frame_Shift_Del	A	-	p.P2494fs
UCEC	TCGA-BG-A0MG-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1265596	1265597	Frame_Shift_Ins	-	C	p.V2496fs
UCEC	TCGA-BG-A0MG-01	UBE3A	ENST00000232165.3,ENST00000428984.2,ENST00000438097.1,ENST00000566215.1,ENST00000397954.2	chr15	25605529:25605674:25615712:25616959:25620611:25620910,	25615713	25616959	25616198	25616198	Frame_Shift_Del	C	-	p.V378fs
UCEC	TCGA-BG-A0MO-01	RUSC1	ENST00000462780.1,ENST00000368349.4,ENST00000292254.4,ENST00000368347.4,ENST00000490373.1,ENST00000368354.3,ENST00000471876.1,ENST00000368352.5	chr1	155296793:155296923:155297940:155298066:155300193:155300520,	155297941	155298066	155297993	155297994	Frame_Shift_Ins	-	G	p.R823fs
UCEC	TCGA-BG-A0MO-01	LRWD1	ENST00000468175.1,ENST00000292616.5	chr7	102112664:102112756:102112900:102113056:102113138:102113251,	102112901	102113056	102112954	102112955	Frame_Shift_Ins	-	G	p.W530fs
UCEC	TCGA-BG-A0MO-01	ZMYM2	ENST00000382871.2,ENST00000382870.3,ENST00000382874.2,ENST00000382869.3	chr13	20633586:20633702:20635192:20635364:20636985:20637111,	20635193	20635364	20635305	20635305	Frame_Shift_Del	T	-	p.L951fs
UCEC	TCGA-BG-A0MQ-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
UCEC	TCGA-BG-A0MQ-01	SYCP1	ENST00000369522.3,ENST00000369518.1	chr1	115523956:115524133:115527345:115527489:115537318:115537408,	115527346	115527489	115527421	115527421	Frame_Shift_Del	A	-	p.K879fs
UCEC	TCGA-BG-A0MQ-01	TMCC2	ENST00000358024.3,ENST00000545499.1,ENST00000495538.1	chr1	205210641:205211172:205238077:205239012:205240247:205240383,	205238078	205239012	205238687	205238687	Frame_Shift_Del	C	-	p.P453fs
UCEC	TCGA-BG-A0MQ-01	ADD2	ENST00000413157.2,ENST00000403045.2,ENST00000355733.3,ENST00000264436.4,ENST00000407644.2,ENST00000430656.1	chr2	70905835:70906093:70910722:70910899:70915155:70915254,	70910723	70910899	70910764	70910764	Frame_Shift_Del	C	-	p.E362fs
UCEC	TCGA-BG-A0MQ-01	NMI	ENST00000243346.5	chr2	152131997:152132184:152132271:152132378:152135341:152135504,	152132272	152132378	152132369	152132369	Frame_Shift_Del	T	-	p.N117fs
UCEC	TCGA-BG-A0MQ-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409fs
UCEC	TCGA-BG-A0MQ-01	NAA15	ENST00000398947.1,ENST00000296543.5	chr4	140282877:140283091:140291364:140291558:140297518:140297627,	140291365	140291558	140291445	140291445	Frame_Shift_Del	A	-	p.K612fs
UCEC	TCGA-BG-A0MQ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32088026	32088026	Frame_Shift_Del	C	-	p.A1491fs
UCEC	TCGA-BG-A0MQ-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150029714	150029714	Frame_Shift_Del	C	-	p.S870fs
UCEC	TCGA-BG-A0MQ-01	BRPF3	ENST00000534400.1	chr6	36185693:36185787:36189944:36190042:36193043:36193141,36185693:36185787:36189944:36190042:36193047:36193141,36185693:36185787:36189944:36190042:36196678:36196833,	36189945	36190042	36189955	36189955	Frame_Shift_Del	C	-	p.P1032fs
UCEC	TCGA-BG-A0MQ-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508008	158508009	Frame_Shift_Ins	-	C	p.R1110fs
UCEC	TCGA-BG-A0MQ-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899920	Frame_Shift_Del	A	-	p.K132fs
UCEC	TCGA-BG-A0MQ-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5385192:5385441:5391449:5391725:5396546:5396907,	5391450	5391725	5391564	5391564	Frame_Shift_Del	G	-	p.R1786fs
UCEC	TCGA-BG-A0MQ-01	PHF14	ENST00000403050.3,ENST00000490957.1	chr7	11014461:11014572:11021998:11022786:11030329:11030474,	11021999	11022786	11022426	11022426	Frame_Shift_Del	A	-	p.P180fs
UCEC	TCGA-BG-A0MQ-01	NOD1	ENST00000434755.1,ENST00000222823.4	chr7	30475616:30475697:30477188:30477272:30485756:30485840,	30477189	30477272	30477206	30477206	Frame_Shift_Del	G	-	p.P840fs
UCEC	TCGA-BG-A0MQ-01	RBM48	ENST00000265732.5	chr7	92161717:92161863:92163715:92164284:92166164:92166848,	92163716	92164284	92164020	92164021	Frame_Shift_Del	TT	-	p.S251fs
UCEC	TCGA-BG-A0MQ-01	BAIAP2L1	ENST00000005260.8,ENST00000462558.1	chr7	97939756:97939904:97941408:97941576:97944771:97944924,	97941409	97941576	97941457	97941457	Frame_Shift_Del	G	-	p.P253fs
UCEC	TCGA-BG-A0MQ-01	LSM1	ENST00000520755.1	chr8	38021127:38021358:38029482:38029551:38033792:38034006,	38029483	38029551	38029503	38029503	Frame_Shift_Del	A	-	p.L32fs
UCEC	TCGA-BG-A0MQ-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-BG-A0MQ-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-BG-A0MQ-01	GAPVD1	ENST00000467750.1,ENST00000497580.1,ENST00000265956.4,ENST00000495955.1,ENST00000394084.1,ENST00000312123.9,ENST00000394104.2,ENST00000297933.6,ENST00000470056.1,ENST00000394105.2,ENST00000394083.2	chr9	128061200:128061385:128064261:128065105:128067341:128067428,	128064262	128065105	128064626	128064627	Frame_Shift_Ins	-	T	p.L184fs
UCEC	TCGA-BG-A0MQ-01	SH3GLB2	ENST00000372559.1,ENST00000372564.3,ENST00000416629.1,ENST00000461811.1	chr9	131770962:131771070:131771384:131771625:131771731:131771746,131770995:131771070:131771384:131771625:131772049:131772150,	131771385	131771625	131771467	131771467	Frame_Shift_Del	G	-	p.P342fs
UCEC	TCGA-BG-A0MQ-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7768912:7769081:7769665:7769791:7771914:7772096,	7769666	7769791	7769789	7769790	Frame_Shift_Ins	-	GGGC	p.V426fs
UCEC	TCGA-BG-A0MQ-01	AGBL2	ENST00000357610.3,ENST00000298861.4,ENST00000528609.1,ENST00000525123.1	chr11	47681144:47681898:47684577:47684664:47688507:47688615,	47684578	47684664	47684631	47684631	Frame_Shift_Del	G	-	p.L828fs
UCEC	TCGA-BG-A0MQ-01	ESYT1	ENST00000394048.5,ENST00000541590.1,ENST00000267113.4,ENST00000547667.1	chr12	56531125:56531157:56531282:56531459:56531615:56531698,	56531283	56531459	56531452	56531452	Frame_Shift_Del	T	-	p.V713fs
UCEC	TCGA-BG-A0MQ-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.P732fs
UCEC	TCGA-BG-A0MQ-01	MDM1	ENST00000303145.7,ENST00000540418.1,ENST00000411698.2	chr12	68690702:68690762:68696399:68696652:68707222:68707332,	68696400	68696652	68696601	68696601	Frame_Shift_Del	T	-	p.T591fs
UCEC	TCGA-BG-A0MQ-01	FGD6	ENST00000549499.1,ENST00000546711.1	chr12	95566375:95566520:95602618:95605043:95611000:95611155,	95602619	95605043	95603820	95603820	Frame_Shift_Del	T	-	p.M414fs
UCEC	TCGA-BG-A0MQ-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.P138fs
UCEC	TCGA-BG-A0MQ-01	HNRNPC	ENST00000557201.1,ENST00000554539.1,ENST00000320084.7,ENST00000554455.1,ENST00000420743.2,ENST00000553444.1,ENST00000556897.1,ENST00000556628.1,ENST00000557442.1,ENST00000555883.1,ENST00000430246.2,ENST00000553300.1,ENST00000557157.1,ENST00000449098.1,ENST00000554969.1	chr14	21679451:21679465:21679564:21679725:21679968:21680082,	21679565	21679725	21679635	21679635	Frame_Shift_Del	C	-	p.G256fs
UCEC	TCGA-BG-A0MQ-01	HNRNPC	ENST00000555309.1,ENST00000555914.1	chr14	21679451:21679465:21679564:21679722:21679968:21680082,	21679565	21679722	21679635	21679635	Frame_Shift_Del	C	-	p.G256fs
UCEC	TCGA-BG-A0MQ-01	PPP2R3C	ENST00000557278.1,ENST00000555644.1,ENST00000555630.1,ENST00000261475.5,ENST00000554563.1,ENST00000557773.1,ENST00000554361.1,ENST00000556254.1	chr14	35579730:35579835:35585815:35585943:35591107:35591155,	35585816	35585943	35585935	35585935	Frame_Shift_Del	T	-	p.S23fs
UCEC	TCGA-BG-A0MQ-01	WDR90	ENST00000552728.1	chr16	711890:712059:712219:712331:715678:715801,	712220	712331	712290	712290	Frame_Shift_Del	G	-	p.V1368fs
UCEC	TCGA-BG-A0MQ-01	CHD9	ENST00000564845.1,ENST00000219084.6,ENST00000566029.1,ENST00000447540.1,ENST00000565803.1,ENST00000398510.3	chr16	53283812:53283978:53288349:53288517:53289511:53289691,	53288350	53288517	53288425	53288426	Frame_Shift_Del	GA	-	p.E1313fs
UCEC	TCGA-BG-A0MQ-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9256207	9256207	Frame_Shift_Del	A	-	p.E981fs
UCEC	TCGA-BG-A0MQ-01	ITPKC	ENST00000263370.2,ENST00000597003.1	chr19	41242890:41242992:41243602:41243674:41245261:41245484,	41243603	41243674	41243651	41243652	Frame_Shift_Ins	-	C	p.S609fs
UCEC	TCGA-BG-A0MQ-01	SYMPK	ENST00000593504.1,ENST00000598896.1,ENST00000600237.1,ENST00000245934.7,ENST00000593899.1,ENST00000599814.1,ENST00000599460.1	chr19	46338353:46338486:46341718:46341873:46345507:46345747,	46341719	46341873	46341859	46341859	Frame_Shift_Del	C	-	p.E368fs
UCEC	TCGA-BG-A0MQ-01	KLK5	ENST00000336334.3,ENST00000391809.2	chr19	51453110:51453372:51455840:51455924:51456002:51456070,	51455841	51455924	51455893	51455893	Frame_Shift_Del	G	-	p.P7fs
UCEC	TCGA-BG-A0MQ-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641759	36641760	Frame_Shift_Del	CA	-	p.F153fs
UCEC	TCGA-BG-A0MQ-01	USP9X	ENST00000462850.1,ENST00000324545.8,ENST00000378308.2	chrX	41055503:41055612:41055844:41055991:41056616:41056763,	41055845	41055991	41055854	41055855	Frame_Shift_Del	AG	-	p.R1366fs
UCEC	TCGA-BG-A0MS-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712001	89712001	Frame_Shift_Del	A	-	p.S207fs
UCEC	TCGA-BG-A0MU-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510696	169510696	Frame_Shift_Del	G	-	p.T1211fs
UCEC	TCGA-BG-A0MU-01	CDKL2	ENST00000429927.2,ENST00000307465.4	chr4	76532366:76532545:76539438:76539633:76551004:76551201,	76539439	76539633	76539579	76539580	Frame_Shift_Ins	-	T	p.K74fs
UCEC	TCGA-BG-A0RY-01	COPB2	ENST00000507777.1,ENST00000333188.5	chr3	139077585:139077654:139077839:139078020:139078111:139078204,	139077840	139078020	139077963	139077964	Frame_Shift_Ins	-	GA	p.S787fs
UCEC	TCGA-BG-A0RY-01	PRPS2	ENST00000398491.2,ENST00000380668.5	chrX	12827352:12827451:12828140:12828265:12837625:12837799,	12828141	12828265	12828230	12828231	Frame_Shift_Ins	-	ATCATTG	p.C168fs
UCEC	TCGA-BG-A0VX-01	CD36	ENST00000419819.2,ENST00000394788.3,ENST00000432207.1,ENST00000435819.1,ENST00000433696.2,ENST00000538969.1,ENST00000447544.2,ENST00000309881.7,ENST00000534394.1,ENST00000544133.1	chr7	80301280:80301356:80302085:80302159:80302670:80302725,	80302086	80302159	80302149	80302150	Frame_Shift_Ins	-	A	p.E397fs
UCEC	TCGA-BG-A0VX-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685270	89685271	Frame_Shift_Ins	-	T	p.R55_splice
UCEC	TCGA-BG-A0VZ-01	CRYZ	ENST00000370871.3,ENST00000441120.1,ENST00000417775.1,ENST00000340866.5,ENST00000370870.1	chr1	75180262:75180314:75184892:75185056:75188801:75188942,	75184893	75185056	75184961	75184961	Frame_Shift_Del	T	-	p.K120fs
UCEC	TCGA-BG-A0VZ-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81_splice
UCEC	TCGA-BG-A0VZ-01	DARS2	ENST00000361951.4,ENST00000239457.5	chr1	173808504:173808684:173810003:173810111:173814366:173814429,	173810004	173810111	173810069	173810070	Frame_Shift_Ins	-	C	p.K362fs
UCEC	TCGA-BG-A0VZ-01	ACBD3	ENST00000366812.5	chr1	226349231:226349390:226352489:226352630:226353559:226353701,	226352490	226352630	226352491	226352491	Frame_Shift_Del	T	-	p.R190_splice
UCEC	TCGA-BG-A0VZ-01	TNS1	ENST00000430930.1,ENST00000419504.1,ENST00000171887.4	chr2	218700737:218700934:218712232:218713810:218745620:218745737,	218712233	218713810	218713686	218713686	Frame_Shift_Del	G	-	p.P393fs
UCEC	TCGA-BG-A0VZ-01	CSPG5	ENST00000383738.2	chr3	47604074:47604251:47610560:47610717:47614175:47614364,	47610561	47610717	47610602	47610602	Frame_Shift_Del	G	-	p.H500fs
UCEC	TCGA-BG-A0VZ-01	CLDN16	ENST00000264734.2	chr3	190122589:190122715:190126102:190126294:190127691:190127797,	190126103	190126294	190126286	190126286	Frame_Shift_Del	T	-	p.L259fs
UCEC	TCGA-BG-A0VZ-01	SMAP1	ENST00000370452.3,ENST00000316999.5,ENST00000370455.3	chr6	71508359:71508440:71546643:71546731:71562242:71562367,	71546644	71546731	71546674	71546674	Frame_Shift_Del	A	-	p.K203fs
UCEC	TCGA-BG-A0VZ-01	PHACTR2	ENST00000305766.6,ENST00000367584.4,ENST00000367582.3	chr6	144074890:144075049:144086397:144086935:144093394:144093594,	144086398	144086935	144086414	144086414	Frame_Shift_Del	A	-	p.S237fs
UCEC	TCGA-BG-A0VZ-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.G73fs
UCEC	TCGA-BG-A0VZ-01	TG	ENST00000377869.1,ENST00000523756.1,ENST00000220616.4	chr8	133948000:133948109:133953595:133953787:133961020:133961122,	133953596	133953787	133953749	133953750	Frame_Shift_Del	TG	-	p.L1732fs
UCEC	TCGA-BG-A0VZ-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000528131.1,ENST00000527816.1,ENST00000356346.3,ENST00000354589.3,ENST00000526416.1,ENST00000357649.2	chr8	145011146:145011239:145011332:145011410:145012318:145012408,	145011333	145011410	145011396	145011396	Frame_Shift_Del	C	-	p.G230fs
UCEC	TCGA-BG-A0VZ-01	VEGFB	ENST00000309422.2	chr11	64003725:64003799:64004658:64004694:64004992:64005127,64003725:64003799:64004658:64004694:64004891:64005127,	64004659	64004694	64004663	64004663	Frame_Shift_Del	A	-	p.K127fs
UCEC	TCGA-BG-A0VZ-01	RAB1B	ENST00000311481.6	chr11	66039627:66039723:66039835:66039931:66043274:66043382,	66039836	66039931	66039888	66039888	Frame_Shift_Del	G	-	p.R79fs
UCEC	TCGA-BG-A0VZ-01	MYO7A	ENST00000409709.3,ENST00000458637.2,ENST00000409893.1,ENST00000409619.2	chr11	76870492:76870569:76871208:76871328:76872018:76872161,	76871209	76871328	76871214	76871214	Frame_Shift_Del	C	-	p.N362fs
UCEC	TCGA-BG-A0VZ-01	TMCO3	ENST00000375391.1,ENST00000474393.1,ENST00000434316.2	chr13	114156066:114156195:114157810:114157903:114164552:114164739,	114157811	114157903	114157849	114157850	Frame_Shift_Ins	-	T	p.V328fs
UCEC	TCGA-BG-A0VZ-01	ACAN	ENST00000558704.1	chr15	89416199:89416256:89417072:89417290:89417635:89417712,	89417073	89417290	89417087	89417087	Frame_Shift_Del	C	-	p.P2450fs
UCEC	TCGA-BG-A0VZ-01	ACAN	ENST00000439576.2,ENST00000561243.1,ENST00000559004.1	chr15	89416199:89416256:89417072:89417255:89417635:89417712,	89417073	89417255	89417087	89417087	Frame_Shift_Del	C	-	p.P2450fs
UCEC	TCGA-BG-A0VZ-01	SERPINF2	ENST00000324015.3,ENST00000453066.1,ENST00000382061.4	chr17	1648626:1648689:1649001:1649203:1650312:1650456,	1649002	1649203	1649081	1649082	Frame_Shift_Ins	-	G	p.L82fs
UCEC	TCGA-BG-A0VZ-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P597fs
UCEC	TCGA-BG-A0VZ-01	NMT1	ENST00000592782.1,ENST00000588455.1,ENST00000258960.2,ENST00000543908.1	chr17	43173561:43173653:43174495:43174612:43175749:43175823,	43174496	43174612	43174520	43174520	Frame_Shift_Del	C	-	p.L207fs
UCEC	TCGA-BG-A0VZ-01	ZNF652	ENST00000508237.1	chr17	47366569:47369057:47375467:47376286:47388673:47388818,	47375468	47376286	47375976	47375977	Frame_Shift_Ins	-	G	p.P540fs
UCEC	TCGA-BG-A0VZ-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590343	5590343	Frame_Shift_Del	C	-	p.G824fs
UCEC	TCGA-BG-A0VZ-01	MICAL3	ENST00000441493.2	chr22	18299455:18299550:18300076:18301895:18304192:18304275,	18300077	18301895	18300932	18300932	Frame_Shift_Del	G	-	p.R1499fs
UCEC	TCGA-BG-A0VZ-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A234fs
UCEC	TCGA-BG-A0VZ-01	ITIH6	ENST00000218436.6	chrX	54781449:54781542:54783397:54785431:54786188:54786360,	54783398	54785431	54784113	54784114	Frame_Shift_Del	TG	-	p.T798fs
UCEC	TCGA-BG-A0W1-01	POLE2	ENST00000554396.1,ENST00000539565.2,ENST00000556584.1,ENST00000216367.5	chr14	50120872:50120932:50121501:50121556:50121722:50121782,	50121502	50121556	50121527	50121531	Frame_Shift_Del	ATATT	-	p.I348fs
UCEC	TCGA-BG-A0W1-01	ATP6V0A1	ENST00000264649.6	chr17	40620053:40620125:40622107:40622236:40629677:40629760,40620053:40620125:40622107:40622236:40629656:40629760,	40622108	40622236	40622193	40622199	Frame_Shift_Del	AATTAAA	-	p.E127fs
UCEC	TCGA-BG-A0W2-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510227	195510228	Frame_Shift_Ins	-	G	p.E2741fs
UCEC	TCGA-BG-A0W2-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195510230	195510230	Frame_Shift_Del	C	-	p.E2741fs
UCEC	TCGA-BG-A0YV-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
UCEC	TCGA-BG-A0YV-01	TMCO3	ENST00000434316.2	chr13	114174930:114175048:114188359:114188555:114193671:114193797,	114188360	114188555	114188422	114188423	Frame_Shift_Ins	-	G	p.A469fs
UCEC	TCGA-BG-A0YV-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67654599:67654720:67655344:67655494:67660457:67660618,	67655345	67655494	67655414	67655414	Frame_Shift_Del	T	-	p.I426fs
UCEC	TCGA-BG-A186-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.R707fs
UCEC	TCGA-BG-A186-01	COX20	ENST00000366528.3	chr1	244998960:244999058:245005245:245005360:245005500:245005560,244999786:244999822:245005245:245005360:245005496:245005560,	245005246	245005360	245005335	245005336	Frame_Shift_Ins	-	G	p.A44fs
UCEC	TCGA-BG-A186-01	COX20	ENST00000366528.3	chr1	244998960:244999058:245005245:245005360:245005500:245005560,244999786:244999822:245005245:245005360:245005496:245005560,	245005246	245005360	245005344	245005344	Frame_Shift_Del	A	-	p.G47fs
UCEC	TCGA-BG-A186-01	CAPN12	ENST00000328867.4,ENST00000594497.1,ENST00000601953.1	chr19	39225452:39225510:39226009:39226069:39226141:39226184,	39226010	39226069	39226067	39226068	Frame_Shift_Ins	-	C	p.G543_splice
UCEC	TCGA-BG-A187-01	COPG1	ENST00000314797.6,ENST00000515725.1	chr3	128984391:128984635:128985866:128985942:128986779:128986883,	128985867	128985942	128985900	128985900	Frame_Shift_Del	A	-	p.Q501fs
UCEC	TCGA-BG-A187-01	ACD	ENST00000393919.4,ENST00000602382.1,ENST00000602320.1,ENST00000219251.8,ENST00000602850.1	chr16	67692622:67692719:67692830:67692982:67693131:67693166,	67692831	67692982	67692860	67692860	Frame_Shift_Del	G	-	p.H292fs
UCEC	TCGA-BG-A18A-01	CDK19	ENST00000463016.1	chr6	110948204:110948348:110953232:110953364:110959851:110959909,110948204:110948348:110953232:110953364:110988636:110988777,	110953233	110953364	110953351	110953351	Frame_Shift_Del	A	-	p.F176fs
UCEC	TCGA-BG-A18B-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101117	27101117	Frame_Shift_Del	C	-	p.P1467fs
UCEC	TCGA-BG-A18B-01	ADAMTSL4	ENST00000271643.4,ENST00000369038.2,ENST00000369039.5,ENST00000369041.5	chr1	150529969:150530099:150530420:150530625:150530948:150531125,	150530421	150530625	150530506	150530506	Frame_Shift_Del	G	-	p.G778fs
UCEC	TCGA-BG-A18B-01	ASPM	ENST00000294732.7,ENST00000367409.4	chr1	197104225:197104372:197108896:197109001:197111460:197112940,	197108897	197109001	197108900	197108900	Frame_Shift_Del	T	-	p.T675fs
UCEC	TCGA-BG-A18B-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652960	1652960	Frame_Shift_Del	G	-	p.P864fs
UCEC	TCGA-BG-A18B-01	ASAP2	ENST00000281419.3,ENST00000315273.4,ENST00000484590.1	chr2	9540151:9540201:9540870:9540959:9541402:9541525,	9540871	9540959	9540926	9540927	Frame_Shift_Ins	-	C	p.Q930fs
UCEC	TCGA-BG-A18B-01	FEZ2	ENST00000305852.7,ENST00000405912.3,ENST00000357996.4,ENST00000413938.1,ENST00000487282.1,ENST00000464964.1	chr2	36782830:36782891:36785580:36785656:36805739:36805975,	36785581	36785656	36785621	36785622	Frame_Shift_Ins	-	T	p.N340fs
UCEC	TCGA-BG-A18B-01	UBP1	ENST00000283629.3,ENST00000411650.1,ENST00000447368.2,ENST00000486388.1,ENST00000283628.5	chr3	33438536:33438627:33441680:33441774:33442453:33442508,	33441681	33441774	33441722	33441722	Frame_Shift_Del	T	-	p.N380fs
UCEC	TCGA-BG-A18B-01	FAT1	ENST00000441802.2	chr4	187538158:187538355:187538861:187542929:187549307:187549518,	187538862	187542929	187539662	187539663	Frame_Shift_Ins	-	T	p.I2693fs
UCEC	TCGA-BG-A18B-01	MGAT4B	ENST00000518867.1,ENST00000518980.1,ENST00000518702.1,ENST00000292591.7,ENST00000520918.1,ENST00000523382.1,ENST00000518778.1,ENST00000337755.5,ENST00000519836.1,ENST00000523108.1	chr5	179227183:179227259:179227483:179227597:179227906:179227928,	179227484	179227597	179227545	179227545	Frame_Shift_Del	G	-	p.H235fs
UCEC	TCGA-BG-A18B-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351541	74351542	Frame_Shift_Ins	-	T	p.I133fs
UCEC	TCGA-BG-A18B-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151673901	151673902	Frame_Shift_Ins	-	A	p.E1459fs
UCEC	TCGA-BG-A18B-01	RBM33	ENST00000392761.3	chr7	155537654:155538296:155556502:155556712:155559160:155559250,	155556503	155556712	155556609	155556609	Frame_Shift_Del	G	-	p.R1028fs
UCEC	TCGA-BG-A18B-01	RBM33	ENST00000401878.3	chr7	155537654:155538296:155556505:155556712:155559160:155559250,	155556506	155556712	155556609	155556609	Frame_Shift_Del	G	-	p.R1028fs
UCEC	TCGA-BG-A18B-01	HSF1	ENST00000532338.1,ENST00000527328.1,ENST00000528838.1	chr8	145535451:145535522:145535648:145535930:145537196:145537302,	145535649	145535930	145535876	145535876	Frame_Shift_Del	C	-	p.S363fs
UCEC	TCGA-BG-A18B-01	RCL1	ENST00000381750.4	chr9	4823547:4823619:4826857:4827033:4833153:4833228,	4826858	4827033	4826988	4826988	Frame_Shift_Del	A	-	p.L113fs
UCEC	TCGA-BG-A18B-01	GRIK4	ENST00000438375.2,ENST00000527524.2,ENST00000533291.1	chr11	120823563:120823673:120827488:120827662:120831617:120831783,	120827489	120827662	120827592	120827592	Frame_Shift_Del	G	-	p.G602fs
UCEC	TCGA-BG-A18B-01	DENND5B	ENST00000389082.5,ENST00000354285.4,ENST00000306833.6,ENST00000536562.1	chr12	31600471:31600703:31604873:31605410:31613127:31613315,	31604874	31605410	31605092	31605092	Frame_Shift_Del	T	-	p.M506fs
UCEC	TCGA-BG-A18B-01	MIS18BP1	ENST00000310806.4	chr14	45687484:45687657:45693120:45693949:45695945:45696039,	45693121	45693949	45693722	45693722	Frame_Shift_Del	T	-	p.S690fs
UCEC	TCGA-BG-A18B-01	EIF2AK4	ENST00000263791.5,ENST00000559624.1,ENST00000382727.2	chr15	40241316:40241469:40246104:40246185:40247820:40247969,	40246105	40246185	40246159	40246159	Frame_Shift_Del	A	-	p.K190fs
UCEC	TCGA-BG-A18B-01	CHTF18	ENST00000440239.1,ENST00000464728.1	chr16	842223:842367:842438:842590:842717:842811,	842439	842590	842546	842546	Frame_Shift_Del	G	-	p.E506fs
UCEC	TCGA-BG-A18B-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
UCEC	TCGA-BG-A18B-01	SLC16A11	ENST00000308009.1	chr17	6944977:6945227:6945314:6946082:6946248:6946392,	6945315	6946082	6945716	6945717	Frame_Shift_Ins	-	A	p.Y262fs
UCEC	TCGA-BG-A18B-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17699359	17699359	Frame_Shift_Del	C	-	p.P1033fs
UCEC	TCGA-BG-A18B-01	APOH	ENST00000205948.6	chr17	64208156:64208306:64210570:64210768:64212905:64213082,	64210571	64210768	64210715	64210716	Frame_Shift_Del	CT	-	p.R279fs
UCEC	TCGA-BG-A18B-01	FLT3LG	ENST00000600429.1,ENST00000597551.1,ENST00000204637.2,ENST00000600084.1,ENST00000594009.1,ENST00000595510.1	chr19	49979679:49979823:49982165:49982304:49983554:49983733,	49982166	49982304	49982166	49982166	Frame_Shift_Del	C	-	p.P115_splice
UCEC	TCGA-BG-A18B-01	RALGAPB	ENST00000438490.1,ENST00000397038.1,ENST00000397040.1,ENST00000262879.6,ENST00000397042.3	chr20	37174885:37175073:37177331:37177438:37179713:37179866,	37177332	37177438	37177336	37177336	Frame_Shift_Del	T	-	p.D969fs
UCEC	TCGA-BG-A18B-01	TRAPPC10	ENST00000459741.1,ENST00000291574.4,ENST00000422875.1	chr21	45513954:45514114:45518237:45518415:45522658:45522853,	45518238	45518415	45518390	45518390	Frame_Shift_Del	T	-	p.H1107fs
UCEC	TCGA-BG-A18C-01	SEC31A	ENST00000443462.2,ENST00000513858.1,ENST00000432794.1,ENST00000348405.4,ENST00000311785.7,ENST00000500777.2,ENST00000509142.1,ENST00000326950.5,ENST00000503937.1,ENST00000505984.1,ENST00000505472.1,ENST00000448323.1,ENST00000508502.1,ENST00000355196.2,ENST00000264405.5,ENST00000395310.2	chr4	83742189:83742261:83745707:83745827:83748521:83748765,	83745708	83745827	83745800	83745800	Frame_Shift_Del	T	-	p.I1107fs
UCEC	TCGA-BK-A0C9-01	KIAA0319L	ENST00000431916.1	chr1	35940469:35940507:35944566:35944813:36019950:36020120,35940469:35940507:35944566:35944813:35972212:35972468,35936463:35936561:35944566:35944813:35972212:35972468,	35944567	35944813	35944603	35944603	Frame_Shift_Del	G	-	p.Q293fs
UCEC	TCGA-BK-A0C9-01	MAST2	ENST00000372009.2,ENST00000372008.2,ENST00000361297.2	chr1	46493402:46493535:46494439:46494605:46495137:46495239,	46494440	46494605	46494559	46494559	Frame_Shift_Del	T	-	p.P724fs
UCEC	TCGA-BK-A0C9-01	JAK1	ENST00000342505.4	chr1	65334993:65335157:65339052:65339206:65344707:65344746,	65339053	65339206	65339111	65339111	Frame_Shift_Del	T	-	p.K142fs
UCEC	TCGA-BK-A0C9-01	CHI3L2	ENST00000369744.2,ENST00000445067.2,ENST00000466741.1,ENST00000524472.1,ENST00000369748.4	chr1	111778645:111778775:111781371:111781554:111783948:111784065,	111781372	111781554	111781482	111781482	Frame_Shift_Del	G	-	p.V282fs
UCEC	TCGA-BK-A0C9-01	PIKFYVE	ENST00000443896.1	chr2	209138307:209138457:209141435:209141554:209150449:209150524,	209141436	209141554	209141542	209141542	Frame_Shift_Del	G	-	p.E143fs
UCEC	TCGA-BK-A0C9-01	PLCD4	ENST00000459791.1,ENST00000417849.1,ENST00000432688.1,ENST00000450993.2,ENST00000473443.1	chr2	219494241:219494386:219495372:219495525:219496858:219497035,	219495373	219495525	219495462	219495462	Frame_Shift_Del	G	-	p.L403fs
UCEC	TCGA-BK-A0C9-01	MTMR12	ENST00000382142.3,ENST00000280285.5,ENST00000264934.5	chr5	32239106:32239279:32242162:32242233:32243626:32243705,	32242163	32242233	32242217	32242218	Frame_Shift_Ins	-	T	p.K372fs
UCEC	TCGA-BK-A0C9-01	DDO	ENST00000368924.3	chr6	110712973:110714545:110725976:110726153:110729536:110729645,	110725977	110726153	110726050	110726050	Frame_Shift_Del	G	-	p.Q157fs
UCEC	TCGA-BK-A0C9-01	AKAP7	ENST00000368123.4,ENST00000431975.2	chr6	131520600:131520713:131540800:131540948:131602669:131603083,	131540801	131540948	131540807	131540807	Frame_Shift_Del	A	-	p.K215fs
UCEC	TCGA-BK-A0C9-01	ACTB	ENST00000493945.1	chr7	5567371:5567522:5567634:5568350:5568791:5569031,	5567635	5568350	5567994	5567994	Frame_Shift_Del	G	-	p.Y240fs
UCEC	TCGA-BK-A0C9-01	OSBPL3	ENST00000409452.1,ENST00000409555.1,ENST00000396429.1,ENST00000313367.2,ENST00000352860.1,ENST00000409863.1,ENST00000396431.1,ENST00000409069.1,ENST00000409759.1,ENST00000431825.2,ENST00000353930.1	chr7	24905688:24905856:24910350:24910464:24911360:24911414,	24910351	24910464	24910451	24910452	Frame_Shift_Ins	-	TC	p.K94fs
UCEC	TCGA-BK-A0C9-01	CSGALNACT1	ENST00000397998.3,ENST00000544602.1,ENST00000311540.4,ENST00000522854.1,ENST00000519222.1	chr8	19315936:19316153:19362711:19363641:19459281:19459376,	19362712	19363641	19363007	19363008	Frame_Shift_Ins	-	G	p.P113fs
UCEC	TCGA-BK-A0C9-01	UBR5	ENST00000220959.4,ENST00000520898.1,ENST00000520539.1,ENST00000521922.1	chr8	103311094:103311199:103311679:103311775:103312227:103312379,	103311680	103311775	103311747	103311747	Frame_Shift_Del	G	-	p.P1045fs
UCEC	TCGA-BK-A0C9-01	COL14A1	ENST00000247781.3,ENST00000297848.3,ENST00000309791.4	chr8	121295874:121296017:121298099:121298209:121301846:121302005,	121298100	121298209	121298119	121298120	Frame_Shift_Del	AT	-	p.T1329fs
UCEC	TCGA-BK-A0C9-01	PDCD1LG2	ENST00000397747.3	chr9	5534744:5535050:5549334:5549604:5557617:5557752,	5549335	5549604	5549526	5549526	Frame_Shift_Del	C	-	p.P185fs
UCEC	TCGA-BK-A0C9-01	TEX10	ENST00000535814.1,ENST00000374902.4	chr9	103070781:103070963:103072580:103072661:103082546:103082680,	103072581	103072661	103072653	103072653	Frame_Shift_Del	A	-	p.F737fs
UCEC	TCGA-BK-A0C9-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24833175	24833176	Frame_Shift_Ins	-	A	p.R1659fs
UCEC	TCGA-BK-A0C9-01	FAS	ENST00000352159.4,ENST00000477270.1,ENST00000487314.1,ENST00000357339.2,ENST00000313771.5,ENST00000355740.2,ENST00000355279.2,ENST00000371857.3	chr10	90767456:90767594:90768645:90768754:90770295:90770357,	90768646	90768754	90768708	90768708	Frame_Shift_Del	T	-	p.F133fs
UCEC	TCGA-BK-A0C9-01	FNBP4	ENST00000263773.5	chr11	47738778:47739064:47741480:47741638:47744527:47744868,	47741481	47741638	47741597	47741598	Frame_Shift_Ins	-	T	p.K949fs
UCEC	TCGA-BK-A0C9-01	TAF1D	ENST00000534770.1	chr11	93470321:93470405:93471274:93471606:93472402:93472497,	93471275	93471606	93471452	93471453	Frame_Shift_Ins	-	T	p.K94fs
UCEC	TCGA-BK-A0C9-01	TAF1D	ENST00000448108.2,ENST00000526015.1,ENST00000527169.1,ENST00000323981.2	chr11	93470321:93470405:93471274:93471665:93472402:93472497,	93471275	93471665	93471452	93471453	Frame_Shift_Ins	-	T	p.K94fs
UCEC	TCGA-BK-A0C9-01	RDX	ENST00000528498.1,ENST00000528556.1,ENST00000530749.1,ENST00000533991.1,ENST00000343115.4,ENST00000405097.1,ENST00000532118.1	chr11	110134769:110134959:110135503:110135599:110143260:110143344,	110135504	110135599	110135560	110135561	Frame_Shift_Ins	-	A	p.F45fs
UCEC	TCGA-BK-A0C9-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578360	14578360	Frame_Shift_Del	A	-	p.E504fs
UCEC	TCGA-BK-A0C9-01	ATP6V0A2	ENST00000330342.3,ENST00000545059.1,ENST00000504192.2	chr12	124221605:124221818:124228331:124228482:124228747:124228884,	124228332	124228482	124228388	124228389	Frame_Shift_Ins	-	C	p.T365fs
UCEC	TCGA-BK-A0C9-01	ARID4A	ENST00000355431.3	chr14	58832741:58832948:58833600:58833747:58838603:58838678,	58833601	58833747	58833719	58833719	Frame_Shift_Del	A	-	p.R1214fs
UCEC	TCGA-BK-A0C9-01	ATF7IP2	ENST00000535850.1,ENST00000568027.1,ENST00000543967.1,ENST00000356427.2,ENST00000396560.2	chr16	10567779:10567846:10574735:10574821:10575692:10575975,	10574736	10574821	10574747	10574748	Frame_Shift_Ins	-	C	p.S521fs
UCEC	TCGA-BK-A0C9-01	TOP2A	ENST00000423485.1	chr17	38548836:38548989:38551700:38551791:38552534:38552717,	38551701	38551791	38551735	38551735	Frame_Shift_Del	T	-	p.K1259fs
UCEC	TCGA-BK-A0C9-01	ANKRD12	ENST00000400020.3,ENST00000262126.4,ENST00000383440.2	chr18	9221849:9221997:9254208:9258929:9263787:9263886,	9254209	9258929	9255427	9255427	Frame_Shift_Del	A	-	p.E721fs
UCEC	TCGA-BK-A0CA-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101401	27101402	Frame_Shift_Ins	-	C	p.V1561fs
UCEC	TCGA-BK-A0CA-01	BCKDK	ENST00000394950.3,ENST00000394951.1,ENST00000219794.6	chr16	31122008:31122082:31122411:31122540:31122620:31122710,	31122412	31122540	31122472	31122473	Frame_Shift_Ins	-	G	p.A259fs
UCEC	TCGA-BK-A0CB-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094291	27094292	Frame_Shift_Ins	-	T	p.S1000fs
UCEC	TCGA-BK-A0CC-01	ELOVL2	ENST00000354666.3	chr6	10990550:10990675:10995239:10995411:11000319:11000397,	10995240	10995411	10995329	10995330	Frame_Shift_Ins	-	T	p.T139fs
UCEC	TCGA-BK-A0CC-01	CUBN	ENST00000377833.4	chr10	16873250:16873416:16877012:16877194:16878233:16878381,	16877013	16877194	16877089	16877090	Frame_Shift_Ins	-	G	p.Q3429fs
UCEC	TCGA-BK-A0CC-01	PANK2	ENST00000464452.1,ENST00000495692.1,ENST00000610179.1,ENST00000336066.3,ENST00000316562.4,ENST00000497424.1	chr20	3891223:3891477:3893104:3893281:3897573:3897697,	3893105	3893281	3893120	3893120	Frame_Shift_Del	T	-	p.T417fs
UCEC	TCGA-BS-A0T9-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685271	89685271	Frame_Shift_Del	T	-	p.R55_splice
UCEC	TCGA-BS-A0T9-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.A201fs
UCEC	TCGA-BS-A0T9-01	APOL1	ENST00000427990.1,ENST00000440669.2,ENST00000422706.1,ENST00000433768.1	chr22	36649209:36649265:36650943:36651045:36653128:36653182,	36650944	36651045	36651022	36651023	Frame_Shift_Del	GA	-	p.L23fs
UCEC	TCGA-BS-A0T9-01	APOL1	ENST00000431184.1,ENST00000397279.4,ENST00000422471.1	chr22	36649209:36649265:36650982:36651045:36653364:36653453,36649209:36649265:36650982:36651045:36653128:36653182,	36650983	36651045	36651022	36651023	Frame_Shift_Del	GA	-	p.L23fs
UCEC	TCGA-BS-A0TA-01	ECE1	ENST00000526194.1,ENST00000264205.6,ENST00000473505.1,ENST00000374893.6,ENST00000357071.4,ENST00000415912.2,ENST00000436918.2	chr1	21586805:21586885:21599191:21599404:21605683:21605825,	21599192	21599404	21599290	21599290	Frame_Shift_Del	C	-	p.G132fs
UCEC	TCGA-BS-A0TA-01	TMEM50A	ENST00000374358.4,ENST00000498135.1,ENST00000491936.1	chr1	25678116:25678184:25683283:25683344:25687150:25687458,25679372:25679465:25683283:25683344:25687150:25687458,	25683284	25683344	25683337	25683337	Frame_Shift_Del	T	-	p.F141fs
UCEC	TCGA-BS-A0TA-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27087874:27087964:27088642:27088810:27089463:27089776,	27088643	27088810	27088788	27088788	Frame_Shift_Del	G	-	p.Q799fs
UCEC	TCGA-BS-A0TA-01	IGSF9	ENST00000361509.3	chr1	159902301:159902442:159903979:159904074:159904214:159904360,	159903980	159904074	159904032	159904032	Frame_Shift_Del	G	-	p.P351fs
UCEC	TCGA-BS-A0TA-01	IGSF9	ENST00000476102.1,ENST00000368094.1	chr1	159902301:159902442:159903979:159904122:159904214:159904360,	159903980	159904122	159904032	159904032	Frame_Shift_Del	G	-	p.P351fs
UCEC	TCGA-BS-A0TA-01	SOX13	ENST00000272193.6,ENST00000480326.1,ENST00000367204.1	chr1	204091027:204091113:204091364:204091527:204091981:204092045,	204091365	204091527	204091508	204091508	Frame_Shift_Del	C	-	p.S335fs
UCEC	TCGA-BS-A0TA-01	SLC26A9	ENST00000469392.1,ENST00000340781.4,ENST00000367135.3,ENST00000367134.2	chr1	205897954:205898037:205898331:205898484:205899019:205899184,	205898332	205898484	205898462	205898462	Frame_Shift_Del	T	-	p.N247fs
UCEC	TCGA-BS-A0TA-01	IRF6	ENST00000542854.1	chr1	209968634:209968763:209969692:209969897:209974584:209974761,209968634:209968763:209969692:209969897:209979291:209979389,	209969693	209969897	209969860	209969861	Frame_Shift_Ins	-	C	p.V71fs
UCEC	TCGA-BS-A0TA-01	CEP170	ENST00000366542.1,ENST00000521911.1	chr1	243336112:243336148:243349080:243349374:243349560:243349582,	243349081	243349374	243349205	243349205	Frame_Shift_Del	T	-	p.N481fs
UCEC	TCGA-BS-A0TA-01	NRBP1	ENST00000379852.3,ENST00000233557.3	chr2	27657588:27657629:27657999:27658094:27659619:27659703,	27658000	27658094	27658018	27658018	Frame_Shift_Del	C	-	p.D195fs
UCEC	TCGA-BS-A0TA-01	TEKT4	ENST00000468063.1,ENST00000295201.4	chr2	95539264:95539335:95539709:95539853:95540520:95540743,	95539710	95539853	95539829	95539830	Frame_Shift_Ins	-	G	p.P230fs
UCEC	TCGA-BS-A0TA-01	PPIG	ENST00000417938.2,ENST00000260970.3,ENST00000530152.1,ENST00000433207.1,ENST00000462903.1,ENST00000414307.1,ENST00000448752.2	chr2	170462612:170462656:170463613:170463658:170465180:170465268,	170463614	170463658	170463649	170463649	Frame_Shift_Del	T	-	p.F94fs
UCEC	TCGA-BS-A0TA-01	MST1R	ENST00000411578.2,ENST00000468525.1,ENST00000296474.3,ENST00000344206.4	chr3	49933972:49934066:49934161:49934323:49934712:49934849,	49934162	49934323	49934243	49934243	Frame_Shift_Del	C	-	p.G755fs
UCEC	TCGA-BS-A0TA-01	CHRD	ENST00000204604.1,ENST00000460627.1,ENST00000448472.1,ENST00000450923.1,ENST00000545352.1,ENST00000420973.1,ENST00000348986.3	chr3	184104838:184104895:184105161:184105265:184105718:184105821,	184105162	184105265	184105213	184105214	Frame_Shift_Ins	-	C	p.H800fs
UCEC	TCGA-BS-A0TA-01	COL25A1	ENST00000399127.1	chr4	109745329:109745383:109748290:109748344:109753535:109753589,	109748291	109748344	109748336	109748336	Frame_Shift_Del	T	-	p.K573fs
UCEC	TCGA-BS-A0TA-01	ANK2	ENST00000357077.4,ENST00000264366.6	chr4	114271383:114271405:114274200:114280455:114281978:114282053,	114274201	114280455	114280134	114280135	Frame_Shift_Ins	-	G	p.R3454fs
UCEC	TCGA-BS-A0TA-01	ZNF330	ENST00000512738.1	chr4	142142087:142142262:142143519:142143645:142145640:142145660,142142083:142142170:142143519:142143645:142145640:142145660,	142143520	142143645	142143532	142143532	Frame_Shift_Del	A	-	p.K3fs
UCEC	TCGA-BS-A0TA-01	ZNF330	ENST00000507532.1	chr4	142142087:142142262:142143519:142143631:142145640:142145660,	142143520	142143631	142143532	142143532	Frame_Shift_Del	A	-	p.K3fs
UCEC	TCGA-BS-A0TA-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266965	6266965	Frame_Shift_Del	C	-	p.A133fs
UCEC	TCGA-BS-A0TA-01	DLC1	ENST00000511869.1,ENST00000316609.5	chr8	13258978:13259128:13356557:13357705:13372110:13372274,	13356558	13357705	13357046	13357047	Frame_Shift_Del	CA	-	p.S178fs
UCEC	TCGA-BS-A0TA-01	LOXL2	ENST00000520349.1,ENST00000522446.1,ENST00000389131.3,ENST00000519809.1,ENST00000518878.1	chr8	23177473:23177565:23179642:23179794:23185894:23186078,	23179643	23179794	23179745	23179746	Frame_Shift_Ins	-	T	p.K400fs
UCEC	TCGA-BS-A0TA-01	KCTD9	ENST00000519665.1,ENST00000221200.4	chr8	25286777:25287489:25290019:25290153:25290845:25290951,	25290020	25290153	25290078	25290078	Frame_Shift_Del	T	-	p.N332fs
UCEC	TCGA-BS-A0TA-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395131	33395132	Frame_Shift_Ins	-	CATCTTCCTC	p.Q30fs
UCEC	TCGA-BS-A0TA-01	AQP7	ENST00000297988.1,ENST00000539936.1	chr9	33386401:33386539:33395075:33395193:33401234:33401285,33386966:33387090:33395075:33395193:33401234:33401285,	33395076	33395193	33395134	33395135	Frame_Shift_Ins	-	CC	p.L29fs
UCEC	TCGA-BS-A0TA-01	TEX10	ENST00000374902.4	chr9	103108975:103109688:103111465:103111654:103115053:103115165,	103111466	103111654	103111633	103111633	Frame_Shift_Del	T	-	p.R5fs
UCEC	TCGA-BS-A0TA-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851665	71851665	Frame_Shift_Del	G	-	p.K144fs
UCEC	TCGA-BS-A0TA-01	MYOF	ENST00000359263.4,ENST00000358334.5,ENST00000371502.4,ENST00000371501.4,ENST00000463743.1	chr10	95089420:95089591:95092977:95093069:95093514:95093670,	95092978	95093069	95093034	95093034	Frame_Shift_Del	T	-	p.K1585fs
UCEC	TCGA-BS-A0TA-01	FAM160A2	ENST00000265978.4,ENST00000524416.1,ENST00000449352.2	chr11	6243671:6243839:6244040:6244127:6244309:6244468,	6244041	6244127	6244115	6244115	Frame_Shift_Del	G	-	p.L317fs
UCEC	TCGA-BS-A0TA-01	ILK	ENST00000527327.1,ENST00000526318.1,ENST00000396751.2,ENST00000299421.4,ENST00000527394.1,ENST00000528995.1,ENST00000420936.2	chr11	6626082:6626173:6629275:6629441:6629623:6629648,6625525:6625590:6629275:6629441:6629623:6629648,	6629276	6629441	6629392	6629392	Frame_Shift_Del	C	-	p.T69fs
UCEC	TCGA-BS-A0TA-01	DDX11	ENST00000407793.2,ENST00000251758.5,ENST00000350437.4,ENST00000542838.1,ENST00000228264.6,ENST00000438391.2,ENST00000545668.1,ENST00000545717.1	chr12	31242002:31242085:31242336:31242424:31242819:31242933,	31242337	31242424	31242361	31242361	Frame_Shift_Del	A	-	p.K273fs
UCEC	TCGA-BS-A0TA-01	PARP4	ENST00000381989.3	chr13	25029154:25029350:25030478:25030616:25033181:25033260,	25030479	25030616	25030500	25030500	Frame_Shift_Del	T	-	p.K847fs
UCEC	TCGA-BS-A0TA-01	ABHD2	ENST00000562073.1,ENST00000569411.1,ENST00000565973.1,ENST00000352732.5,ENST00000355100.3	chr15	89659734:89659752:89694907:89695083:89698597:89698621,	89694908	89695083	89694928	89694928	Frame_Shift_Del	G	-	p.W72fs
UCEC	TCGA-BS-A0TA-01	SH2B1	ENST00000538342.1,ENST00000337120.5,ENST00000545570.1,ENST00000395532.4,ENST00000359285.5,ENST00000322610.8	chr16	28880597:28880704:28883100:28883304:28883510:28883722,	28883101	28883304	28883208	28883208	Frame_Shift_Del	C	-	p.P473fs
UCEC	TCGA-BS-A0TA-01	MVP	ENST00000570234.1,ENST00000563915.1,ENST00000357402.5,ENST00000395353.1	chr16	29841835:29841995:29842198:29842394:29845053:29845071,	29842199	29842394	29842232	29842232	Frame_Shift_Del	C	-	p.V53fs
UCEC	TCGA-BS-A0TA-01	TBC1D10B	ENST00000409939.3	chr16	30376425:30376533:30376815:30376915:30380548:30381585,	30376816	30376915	30376910	30376911	Frame_Shift_Del	CT	-	p.S321fs
UCEC	TCGA-BS-A0TA-01	C16orf46	ENST00000299578.5	chr16	81095314:81095743:81097350:81097598:81099797:81099886,	81097351	81097598	81097444	81097445	Frame_Shift_Ins	-	T	p.N39fs
UCEC	TCGA-BS-A0TA-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046919	17046919	Frame_Shift_Del	C	-	p.S362fs
UCEC	TCGA-BS-A0TA-01	MAP2K7	ENST00000397979.3,ENST00000468058.1,ENST00000545011.1,ENST00000397983.3	chr19	7975983:7976044:7976134:7976215:7976320:7976463,	7976135	7976215	7976149	7976149	Frame_Shift_Del	C	-	p.D290fs
UCEC	TCGA-BS-A0TA-01	TMC4	ENST00000376591.4,ENST00000301187.4,ENST00000446291.1,ENST00000476013.2	chr19	54671896:54672018:54672173:54672406:54673249:54673398,	54672174	54672406	54672230	54672230	Frame_Shift_Del	G	-	p.H213fs
UCEC	TCGA-BS-A0TA-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10626618:10626732:10627586:10627751:10628607:10628758,	10627587	10627751	10627626	10627627	Frame_Shift_Del	CA	-	p.C615fs
UCEC	TCGA-BS-A0TA-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000381291.4,ENST00000379960.5,ENST00000399326.3,ENST00000399355.2,ENST00000399352.1,ENST00000437442.2,ENST00000381285.4,ENST00000381318.3	chr21	35107348:35107509:35122447:35122627:35124114:35124211,	35122448	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
UCEC	TCGA-BS-A0TA-01	ITSN1	ENST00000399353.1	chr21	35107348:35107509:35122558:35122627:35124114:35124211,	35122559	35122627	35122566	35122567	Frame_Shift_Ins	-	C	p.V155fs
UCEC	TCGA-BS-A0TA-01	NCAPH2	ENST00000395701.3,ENST00000520297.1,ENST00000299821.11,ENST00000522048.1,ENST00000420993.2	chr22	50959971:50960038:50960169:50960277:50960414:50960468,	50960170	50960277	50960186	50960187	Frame_Shift_Ins	-	C	p.V339fs
UCEC	TCGA-BS-A0TA-01	HEPH	ENST00000441993.2,ENST00000374727.3,ENST00000419594.1,ENST00000425114.1,ENST00000336279.5,ENST00000519389.1,ENST00000343002.2	chrX	65392196:65392441:65393430:65393643:65408200:65408383,	65393431	65393643	65393489	65393489	Frame_Shift_Del	G	-	p.P211fs
UCEC	TCGA-BS-A0TD-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589610	67589610	Frame_Shift_Del	A	-	p.E458fs
UCEC	TCGA-BS-A0TE-01	MRPL9	ENST00000467306.1	chr1	151734851:151734976:151735425:151735622:151735802:151735810,	151735426	151735622	151735576	151735576	Frame_Shift_Del	T	-	p.E67fs
UCEC	TCGA-BS-A0TE-01	MRPL9	ENST00000486707.1	chr1	151734851:151734976:151735430:151735622:151735802:151735810,	151735431	151735622	151735576	151735576	Frame_Shift_Del	T	-	p.E67fs
UCEC	TCGA-BS-A0TE-01	MRPL9	ENST00000368829.3,ENST00000481777.1,ENST00000461182.1,ENST00000478926.1	chr1	151734851:151734976:151735465:151735622:151735802:151735810,	151735466	151735622	151735576	151735576	Frame_Shift_Del	T	-	p.E67fs
UCEC	TCGA-BS-A0TE-01	PROX1	ENST00000366958.4,ENST00000498508.2,ENST00000261454.4,ENST00000435016.1	chr1	214178509:214178615:214184863:214185058:214208991:214209760,	214184864	214185058	214184966	214184966	Frame_Shift_Del	G	-	p.G646fs
UCEC	TCGA-BS-A0TE-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466697	65466697	Frame_Shift_Del	A	-	p.E469fs
UCEC	TCGA-BS-A0TE-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34835242:34835393:34838630:34838893:34839360:34839469,	34838631	34838893	34838727	34838727	Frame_Shift_Del	C	-	p.S1272fs
UCEC	TCGA-BS-A0TE-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855927	100855927	Frame_Shift_Del	G	-	p.R297fs
UCEC	TCGA-BS-A0TE-01	CPA2	ENST00000222481.4,ENST00000416698.1,ENST00000480781.1,ENST00000487259.1	chr7	129909508:129909643:129910532:129910628:129912915:129913017,	129910533	129910628	129910564	129910564	Frame_Shift_Del	T	-	p.L107fs
UCEC	TCGA-BS-A0TE-01	KIAA1549	ENST00000422774.1	chr7	138597117:138597206:138601493:138604184:138665828:138666064,	138601494	138604184	138603524	138603524	Frame_Shift_Del	A	-	p.L283fs
UCEC	TCGA-BS-A0TE-01	SORBS3	ENST00000240123.7,ENST00000517500.1	chr8	22409439:22409535:22411964:22412121:22412375:22412493,	22411965	22412121	22412110	22412111	Frame_Shift_Ins	-	G	p.R31fs
UCEC	TCGA-BS-A0TE-01	ADAM32	ENST00000379907.4	chr8	39044427:39044564:39068662:39068843:39079128:39079221,	39068663	39068843	39068767	39068767	Frame_Shift_Del	A	-	p.Q386fs
UCEC	TCGA-BS-A0TE-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722672:722805:723240:723353:724723:724829,	723241	723353	723304	723304	Frame_Shift_Del	A	-	p.T469fs
UCEC	TCGA-BS-A0TE-01	EPS8L2	ENST00000530636.1,ENST00000533256.1,ENST00000526909.1,ENST00000531393.1,ENST00000528770.1,ENST00000526198.1,ENST00000318562.8	chr11	722672:722805:723240:723353:724723:724829,	723241	723353	723305	723305	Frame_Shift_Del	C	-	p.T469fs
UCEC	TCGA-BS-A0TE-01	ANO1	ENST00000530676.1	chr11	70031695:70031801:70033843:70034203:70035174:70035358,	70033844	70034203	70034095	70034096	Frame_Shift_Ins	-	G	p.H982fs
UCEC	TCGA-BS-A0TE-01	KRT7	ENST00000331817.5,ENST00000546856.1	chr12	52632502:52632559:52635255:52635420:52636795:52636921,	52635256	52635420	52635264	52635265	Frame_Shift_Del	AG	-	p.T234fs
UCEC	TCGA-BS-A0TE-01	PDS5B	ENST00000315596.10	chr13	33344327:33344698:33344791:33344899:33347326:33347462,	33344792	33344899	33344888	33344888	Frame_Shift_Del	A	-	p.P1387fs
UCEC	TCGA-BS-A0TE-01	LCTL	ENST00000565875.1,ENST00000563438.1	chr15	66856248:66856336:66857013:66857177:66858194:66858231,	66857014	66857177	66857082	66857083	Frame_Shift_Del	TG	-	p.H71fs
UCEC	TCGA-BS-A0TE-01	CHD2	ENST00000557381.1,ENST00000556930.1,ENST00000420239.2,ENST00000536619.1,ENST00000556270.1,ENST00000394196.4	chr15	93472259:93472321:93480747:93480855:93482807:93482948,	93480748	93480855	93480819	93480819	Frame_Shift_Del	A	-	p.Q172fs
UCEC	TCGA-BS-A0TE-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10599867:10600044:10602252:10602396,10597393:10597494:10599867:10600044:10600323:10600529,	10599868	10600044	10600021	10600022	Frame_Shift_Ins	-	A	p.C518fs
UCEC	TCGA-BS-A0TE-01	BACH1	ENST00000399921.1,ENST00000286800.3	chr21	30693541:30693835:30698379:30699714:30701807:30702014,	30698380	30699714	30698571	30698571	Frame_Shift_Del	A	-	p.R142fs
UCEC	TCGA-BS-A0TE-01	DSCAM	ENST00000400454.1,ENST00000404019.2	chr21	41711045:41711342:41719596:41719872:41725391:41725581,	41719597	41719872	41719731	41719731	Frame_Shift_Del	T	-	p.N359fs
UCEC	TCGA-BS-A0TG-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056246	27056253	Frame_Shift_Del	ACATGGGT	-	p.G414fs
UCEC	TCGA-BS-A0TJ-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-BS-A0TJ-01	RPL11	ENST00000458455.1,ENST00000482370.1,ENST00000374550.3	chr1	24020378:24020403:24021149:24021281:24022287:24022398,	24021150	24021281	24021169	24021170	Frame_Shift_Ins	-	A	p.R95fs
UCEC	TCGA-BS-A0TJ-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101598	27101611	Frame_Shift_Del	CTGCCCCTGTGCAG	-	p.P1627fs
UCEC	TCGA-BS-A0TJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101598	27101611	Frame_Shift_Del	CTGCCCCTGTGCAG	-	p.P1627fs
UCEC	TCGA-BS-A0TJ-01	EIF3I	ENST00000373586.1,ENST00000483517.1,ENST00000474371.1	chr1	32694099:32694210:32694327:32694417:32694735:32694809,	32694328	32694417	32694329	32694329	Frame_Shift_Del	T	-	p.L214_splice
UCEC	TCGA-BS-A0TJ-01	GBP5	ENST00000343435.5,ENST00000370459.3	chr1	89727902:89728084:89728365:89728468:89729418:89729631,	89728366	89728468	89728374	89728374	Frame_Shift_Del	T	-	p.K486fs
UCEC	TCGA-BS-A0TJ-01	ASPM	ENST00000367409.4	chr1	197065127:197065294:197069560:197074315:197086918:197087113,	197069561	197074315	197072766	197072766	Frame_Shift_Del	A	-	p.L1872fs
UCEC	TCGA-BS-A0TJ-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652984	1652984	Frame_Shift_Del	G	-	p.P856fs
UCEC	TCGA-BS-A0TJ-01	GCC2	ENST00000482325.1,ENST00000409896.1,ENST00000309863.6	chr2	109085435:109085540:109086106:109088572:109089282:109089355,	109086107	109088572	109087914	109087914	Frame_Shift_Del	T	-	p.V710fs
UCEC	TCGA-BS-A0TJ-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211019062	211019062	Frame_Shift_Del	A	-	p.L82fs
UCEC	TCGA-BS-A0TJ-01	TNS1	ENST00000430930.1,ENST00000446688.1	chr2	218686462:218686661:218696177:218696270:218699813:218699889,	218696178	218696270	218696258	218696258	Frame_Shift_Del	G	-	p.P973fs
UCEC	TCGA-BS-A0TJ-01	PAX3	ENST00000392070.2,ENST00000392069.2,ENST00000409551.3	chr2	223066130:223066161:223066662:223066909:223084858:223085073,	223066663	223066909	223066692	223066692	Frame_Shift_Del	G	-	p.T464fs
UCEC	TCGA-BS-A0TJ-01	HDLBP	ENST00000470482.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000310931.4	chr2	242170189:242170359:242173234:242173378:242174535:242174670,	242173235	242173378	242173306	242173306	Frame_Shift_Del	C	-	p.A1073fs
UCEC	TCGA-BS-A0TJ-01	ATRIP	ENST00000346691.4,ENST00000454733.1,ENST00000320211.3,ENST00000357105.6,ENST00000424906.1,ENST00000412052.1	chr3	48500761:48500853:48501185:48501315:48501508:48501561,	48501186	48501315	48501288	48501288	Frame_Shift_Del	C	-	p.T343fs
UCEC	TCGA-BS-A0TJ-01	STXBP5L	ENST00000471454.1,ENST00000472879.1,ENST00000273666.6,ENST00000471262.1,ENST00000497029.1,ENST00000492541.1	chr3	120952462:120952535:120957817:120957965:120959286:120959354,	120957818	120957965	120957941	120957942	Frame_Shift_Ins	-	A	p.H436fs
UCEC	TCGA-BS-A0TJ-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155743	129155743	Frame_Shift_Del	T	-	p.K248fs
UCEC	TCGA-BS-A0TJ-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155743	129155743	Frame_Shift_Del	T	-	p.K248fs
UCEC	TCGA-BS-A0TJ-01	PDZD2	ENST00000282493.3,ENST00000438447.1	chr5	32077567:32077712:32087236:32091281:32093012:32093130,	32087237	32091281	32089076	32089076	Frame_Shift_Del	A	-	p.Q1841fs
UCEC	TCGA-BS-A0TJ-01	WDR36	ENST00000506538.2,ENST00000513710.2	chr5	110459502:110459622:110459805:110459887:110461305:110461493,	110459806	110459887	110459837	110459837	Frame_Shift_Del	A	-	p.Q823fs
UCEC	TCGA-BS-A0TJ-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675269	176675269	Frame_Shift_Del	A	-	p.K1529fs
UCEC	TCGA-BS-A0TJ-01	RMND1	ENST00000367303.4	chr6	151757580:151757689:151766442:151766960:151773150:151773254,	151766443	151766960	151766726	151766726	Frame_Shift_Del	T	-	p.K74fs
UCEC	TCGA-BS-A0TJ-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405954	157405954	Frame_Shift_Del	G	-	p.P719fs
UCEC	TCGA-BS-A0TJ-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485487	160485488	Frame_Shift_Ins	-	G	p.T1314fs
UCEC	TCGA-BS-A0TJ-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479332	100479332	Frame_Shift_Del	G	-	p.G102fs
UCEC	TCGA-BS-A0TJ-01	PUS7	ENST00000481939.1,ENST00000356362.2,ENST00000469408.1	chr7	105135588:105135700:105142866:105143011:105146401:105146503,	105142867	105143011	105142928	105142929	Frame_Shift_Del	CT	-	p.E223fs
UCEC	TCGA-BS-A0TJ-01	ZNF862	ENST00000223210.4	chr7	149556510:149556615:149557471:149559583:149561197:149561532,	149557472	149559583	149559486	149559486	Frame_Shift_Del	C	-	p.D1079fs
UCEC	TCGA-BS-A0TJ-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.L72fs
UCEC	TCGA-BS-A0TJ-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.K320fs
UCEC	TCGA-BS-A0TJ-01	FUBP3	ENST00000319725.9	chr9	133501750:133501892:133506014:133506175:133506943:133507017,	133506015	133506175	133506076	133506076	Frame_Shift_Del	C	-	p.N393fs
UCEC	TCGA-BS-A0TJ-01	LAMC3	ENST00000361069.4	chr9	133932315:133932534:133936421:133936610:133942346:133942592,	133936422	133936610	133936594	133936594	Frame_Shift_Del	C	-	p.C777fs
UCEC	TCGA-BS-A0TJ-01	PPFIBP2	ENST00000299492.4,ENST00000527790.1	chr11	7570670:7570770:7586783:7586998:7614362:7614455,	7586784	7586998	7586924	7586925	Frame_Shift_Del	GA	-	p.E69fs
UCEC	TCGA-BS-A0TJ-01	BSCL2	ENST00000360796.5,ENST00000405837.1,ENST00000403550.1,ENST00000421906.1,ENST00000407022.3,ENST00000301781.6,ENST00000468505.1,ENST00000433053.1	chr11	62458546:62458613:62458751:62458893:62459847:62459945,	62458752	62458893	62458783	62458783	Frame_Shift_Del	C	-	p.G325fs
UCEC	TCGA-BS-A0TJ-01	SLC22A6	ENST00000377871.3,ENST00000360421.4,ENST00000421062.2,ENST00000537349.1,ENST00000458333.2,ENST00000540654.1	chr11	62748731:62748855:62749313:62749482:62751008:62751163,	62749314	62749482	62749334	62749334	Frame_Shift_Del	A	-	p.F259fs
UCEC	TCGA-BS-A0TJ-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
UCEC	TCGA-BS-A0TJ-01	VSIG10	ENST00000359236.5	chr12	118509163:118509274:118511503:118511797:118517150:118517411,	118511504	118511797	118511707	118511707	Frame_Shift_Del	G	-	p.P339fs
UCEC	TCGA-BS-A0TJ-01	ABCB9	ENST00000540285.1,ENST00000346530.5,ENST00000542678.1,ENST00000546289.1,ENST00000392439.3,ENST00000280560.8	chr12	123414557:123414718:123416738:123416875:123419818:123419978,	123416739	123416875	123416794	123416794	Frame_Shift_Del	G	-	p.P662fs
UCEC	TCGA-BS-A0TJ-01	CENPJ	ENST00000381884.4,ENST00000545981.1	chr13	25482155:25482264:25483927:25484224:25486083:25486207,	25483928	25484224	25484153	25484154	Frame_Shift_Del	CT	-	p.R213fs
UCEC	TCGA-BS-A0TJ-01	KLF12	ENST00000377669.2,ENST00000377666.4	chr13	74269535:74269808:74289504:74289662:74339074:74339137,	74289505	74289662	74289541	74289541	Frame_Shift_Del	T	-	p.S331fs
UCEC	TCGA-BS-A0TJ-01	PLA2G4D	ENST00000290472.3	chr15	42359880:42361139:42362106:42362293:42362914:42363081,	42362107	42362293	42362242	42362242	Frame_Shift_Del	G	-	p.R699fs
UCEC	TCGA-BS-A0TJ-01	PDE8A	ENST00000310298.4,ENST00000394553.1,ENST00000557957.1	chr15	85626786:85626875:85634274:85634412:85641178:85641267,85632568:85632647:85634274:85634412:85641178:85641267,	85634275	85634412	85634360	85634360	Frame_Shift_Del	A	-	p.E267fs
UCEC	TCGA-BS-A0TJ-01	C16orf46	ENST00000299578.5	chr16	81095314:81095743:81097350:81097598:81099797:81099886,	81097351	81097598	81097445	81097445	Frame_Shift_Del	T	-	p.N39fs
UCEC	TCGA-BS-A0TJ-01	TOP3A	ENST00000469739.2,ENST00000321105.5,ENST00000542570.1,ENST00000584582.1,ENST00000580095.1,ENST00000540524.1,ENST00000582981.1	chr17	18178117:18178294:18180988:18181671:18183849:18183972,	18180989	18181671	18181545	18181545	Frame_Shift_Del	G	-	p.P757fs
UCEC	TCGA-BS-A0TJ-01	NBR1	ENST00000589872.1,ENST00000422280.1,ENST00000341165.6,ENST00000590996.1,ENST00000389312.4,ENST00000542611.1	chr17	41348958:41349123:41352183:41352625:41353702:41353797,	41352184	41352625	41352389	41352389	Frame_Shift_Del	C	-	p.R744fs
UCEC	TCGA-BS-A0TJ-01	TEX2	ENST00000258991.3	chr17	62254684:62254831:62265527:62265796:62270918:62271249,	62265528	62265796	62265566	62265566	Frame_Shift_Del	G	-	p.L803fs
UCEC	TCGA-BS-A0TJ-01	TEX2	ENST00000583501.1,ENST00000583097.1,ENST00000584379.1	chr17	62254684:62254831:62265527:62265775:62270918:62271249,	62265528	62265775	62265566	62265566	Frame_Shift_Del	G	-	p.L803fs
UCEC	TCGA-BS-A0TJ-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79803535:79803618:79803746:79803867:79804304:79804383,	79803747	79803867	79803764	79803764	Frame_Shift_Del	T	-	p.N387fs
UCEC	TCGA-BS-A0TJ-01	CEACAM7	ENST00000401731.1	chr19	42187975:42187994:42190789:42191152:42192030:42192096,	42190790	42191152	42190963	42190963	Frame_Shift_Del	T	-	p.N85fs
UCEC	TCGA-BS-A0TJ-01	CSE1L	ENST00000396192.3	chr20	47686741:47686834:47689104:47689234:47691321:47691387,	47689105	47689234	47689201	47689202	Frame_Shift_Ins	-	A	p.E345fs
UCEC	TCGA-BS-A0TJ-01	MYT1	ENST00000328439.1,ENST00000536311.1	chr20	62838946:62839840:62842558:62842693:62843400:62843491,	62842559	62842693	62842683	62842683	Frame_Shift_Del	C	-	p.I472fs
UCEC	TCGA-BS-A0TJ-01	USP9X	ENST00000324545.8	chrX	40944887:40945362:40982723:40982977:40988252:40988398,	40982724	40982977	40982957	40982957	Frame_Shift_Del	C	-	p.P26fs
UCEC	TCGA-BS-A0U5-01	ARHGEF19	ENST00000270747.3	chr1	16534438:16534720:16535137:16535578:16538996:16539104,	16535138	16535578	16535180	16535181	Frame_Shift_Ins	-	CTGTGTGTGT	p.Q123fs
UCEC	TCGA-BS-A0U7-01	TDRD5	ENST00000444136.1,ENST00000294848.8,ENST00000367614.1	chr1	179561736:179561982:179562594:179563002:179564762:179564953,	179562595	179563002	179562637	179562638	Frame_Shift_Ins	-	A	p.A92fs
UCEC	TCGA-BS-A0U7-01	GOLT1A	ENST00000308302.3	chr1	204168327:204168386:204170760:204170939:204172023:204172115,	204170761	204170939	204170836	204170836	Frame_Shift_Del	C	-	p.G74fs
UCEC	TCGA-BS-A0U7-01	SLC4A4	ENST00000425175.1,ENST00000264485.5,ENST00000514331.1,ENST00000351898.6	chr4	72120936:72121116:72205086:72205222:72215628:72215789,	72205087	72205222	72205145	72205146	Frame_Shift_Ins	-	C	p.A104fs
UCEC	TCGA-BS-A0U7-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705894	35705894	Frame_Shift_Del	A	-	p.A883fs
UCEC	TCGA-BS-A0U7-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
UCEC	TCGA-BS-A0U7-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
UCEC	TCGA-BS-A0U7-01	EFHC1	ENST00000480623.1,ENST00000433625.2,ENST00000371068.5,ENST00000538167.1	chr6	52329692:52329913:52334130:52334271:52343834:52344048,	52334131	52334271	52334208	52334208	Frame_Shift_Del	A	-	p.P405fs
UCEC	TCGA-BS-A0U7-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845617	63845618	Frame_Shift_Ins	-	AAAGA	p.K452fs
UCEC	TCGA-BS-A0U7-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685294	89685294	Frame_Shift_Del	C	-	p.N63fs
UCEC	TCGA-BS-A0U7-01	ATXN2	ENST00000389153.4,ENST00000550236.1,ENST00000483311.1,ENST00000377617.3,ENST00000542287.2,ENST00000392645.2,ENST00000608853.1,ENST00000550104.1,ENST00000535949.1	chr12	111956052:111956231:111957682:111957880:111958685:111958749,	111957683	111957880	111957739	111957739	Frame_Shift_Del	T	-	p.K470fs
UCEC	TCGA-BS-A0U7-01	KL	ENST00000487852.1	chr13	33629183:33629452:33634815:33635917:33637985:33638440,33629183:33629502:33634815:33635917:33637985:33638440,	33634816	33635917	33635593	33635594	Frame_Shift_Ins	-	A	p.E793fs
UCEC	TCGA-BS-A0U7-01	NFE2L1	ENST00000585291.1	chr17	46127968:46128181:46128478:46128990:46133747:46133806,	46128479	46128990	46128958	46128959	Frame_Shift_Ins	-	C	p.A160fs
UCEC	TCGA-BS-A0U7-01	NFE2L1	ENST00000357480.5,ENST00000362042.3	chr17	46125731:46125824:46127968:46128990:46133747:46133806,	46127969	46128990	46128958	46128959	Frame_Shift_Ins	-	C	p.A160fs
UCEC	TCGA-BS-A0U8-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-BS-A0U8-01	PHF13	ENST00000377648.4	chr1	6676816:6676918:6679862:6680397:6681470:6684093,	6679863	6680397	6680128	6680128	Frame_Shift_Del	G	-	p.R136fs
UCEC	TCGA-BS-A0U8-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097688	27097688	Frame_Shift_Del	A	-	p.K1093fs
UCEC	TCGA-BS-A0U8-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752266	36752267	Frame_Shift_Del	CT	-	p.N145fs
UCEC	TCGA-BS-A0U8-01	SGIP1	ENST00000371037.4	chr1	67145360:67145435:67147551:67148052:67154830:67154958,	67147552	67148052	67147729	67147729	Frame_Shift_Del	A	-	p.E331fs
UCEC	TCGA-BS-A0U8-01	DCST2	ENST00000368424.3,ENST00000485982.1,ENST00000295536.5,ENST00000368423.1	chr1	154999023:154999191:155001708:155001873:155002559:155002717,	155001709	155001873	155001837	155001838	Frame_Shift_Ins	-	A	p.Y405fs
UCEC	TCGA-BS-A0U8-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912845	159912846	Frame_Shift_Ins	-	G	p.L52fs
UCEC	TCGA-BS-A0U8-01	EPRS	ENST00000366923.3,ENST00000609181.1,ENST00000464052.1	chr1	220170517:220170684:220174479:220174597:220178589:220178702,	220174480	220174597	220174574	220174574	Frame_Shift_Del	G	-	p.P696fs
UCEC	TCGA-BS-A0U8-01	ROCK2	ENST00000462366.1,ENST00000261535.3,ENST00000315872.6	chr2	11376009:11376088:11389786:11389924:11426664:11426765,	11389787	11389924	11389837	11389837	Frame_Shift_Del	A	-	p.W138fs
UCEC	TCGA-BS-A0U8-01	ABCA12	ENST00000272895.7,ENST00000389661.4	chr2	215843039:215843190:215843527:215843764:215845206:215845367,	215843528	215843764	215843617	215843617	Frame_Shift_Del	C	-	p.A1630fs
UCEC	TCGA-BS-A0U8-01	MST1	ENST00000494809.1,ENST00000484269.1,ENST00000383728.3	chr3	49723295:49723395:49723494:49723914:49724116:49724235,	49723495	49723914	49723842	49723842	Frame_Shift_Del	C	-	p.G307fs
UCEC	TCGA-BS-A0U8-01	MST1	ENST00000449682.2,ENST00000489007.1	chr3	49723494:49723625:49723745:49723914:49724116:49724235,	49723746	49723914	49723842	49723842	Frame_Shift_Del	C	-	p.G307fs
UCEC	TCGA-BS-A0U8-01	STAB1	ENST00000321725.6	chr3	52545665:52545761:52546356:52546452:52546611:52546659,	52546357	52546452	52546401	52546401	Frame_Shift_Del	C	-	p.C976fs
UCEC	TCGA-BS-A0U8-01	BCL6	ENST00000419510.2,ENST00000232014.4,ENST00000406870.2	chr3	187443286:187443417:187446147:187446332:187446837:187447809,187444518:187444686:187446147:187446332:187446837:187447809,	187446148	187446332	187446270	187446270	Frame_Shift_Del	G	-	p.P473fs
UCEC	TCGA-BS-A0U8-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823494	114823494	Frame_Shift_Del	T	-	p.K579fs
UCEC	TCGA-BS-A0U8-01	LARP1	ENST00000518297.1,ENST00000521577.1,ENST00000524248.1,ENST00000336314.4	chr5	154173187:154173283:154173359:154173560:154173659:154173755,	154173360	154173560	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
UCEC	TCGA-BS-A0U8-01	LARP1	ENST00000518194.1	chr5	154173187:154173283:154173359:154173482:154173659:154173755,	154173360	154173482	154173390	154173390	Frame_Shift_Del	C	-	p.A223fs
UCEC	TCGA-BS-A0U8-01	ACAT2	ENST00000367048.4,ENST00000541436.1	chr6	160189542:160189660:160196201:160196345:160197181:160197304,	160196202	160196345	160196325	160196325	Frame_Shift_Del	T	-	p.V205fs
UCEC	TCGA-BS-A0U8-01	ADCK5	ENST00000308860.6	chr8	145616560:145616674:145616779:145616911:145616982:145617066,	145616780	145616911	145616866	145616866	Frame_Shift_Del	C	-	p.F295fs
UCEC	TCGA-BS-A0U8-01	COMMD9	ENST00000452374.2	chr11	36298638:36298673:36300026:36300166:36302261:36302387,36298638:36298673:36300026:36300166:36310911:36310974,	36300027	36300166	36300066	36300066	Frame_Shift_Del	T	-	p.N93fs
UCEC	TCGA-BS-A0U8-01	ATM	ENST00000524792.1,ENST00000452508.2,ENST00000278616.4	chr11	108163345:108163520:108164039:108164204:108165653:108165786,	108164040	108164204	108164164	108164164	Frame_Shift_Del	A	-	p.Q1579fs
UCEC	TCGA-BS-A0U8-01	PDS5B	ENST00000450460.1,ENST00000315596.10	chr13	33284082:33284243:33306237:33306361:33309308:33309467,	33306238	33306361	33306278	33306278	Frame_Shift_Del	C	-	p.P722fs
UCEC	TCGA-BS-A0U8-01	MSLN	ENST00000563941.1,ENST00000566549.1,ENST00000566269.2,ENST00000561896.1,ENST00000545450.2,ENST00000382862.3	chr16	816966:817012:817375:817470:818378:818565,	817376	817470	817378	817378	Frame_Shift_Del	G	-	p.G510fs
UCEC	TCGA-BS-A0U8-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.A201fs
UCEC	TCGA-BS-A0U8-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P597fs
UCEC	TCGA-BS-A0U8-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
UCEC	TCGA-BS-A0U8-01	EIF3G	ENST00000253108.4,ENST00000588709.1,ENST00000587590.1,ENST00000589009.1,ENST00000589454.1,ENST00000593066.1,ENST00000587993.1	chr19	10227647:10227665:10227759:10227864:10229343:10229403,	10227760	10227864	10227826	10227826	Frame_Shift_Del	G	-	p.P113fs
UCEC	TCGA-BS-A0U8-01	ARFGAP3	ENST00000437119.2,ENST00000263245.5,ENST00000429508.2,ENST00000453516.1	chr22	43213734:43213863:43218275:43218415:43219661:43219708,	43218276	43218415	43218346	43218347	Frame_Shift_Ins	-	T	p.K247fs
UCEC	TCGA-BS-A0UL-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F149fs
UCEC	TCGA-BS-A0UL-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F149fs
UCEC	TCGA-BS-A0UL-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F149fs
UCEC	TCGA-BS-A0UL-01	NLRC4	ENST00000404025.2,ENST00000360906.5,ENST00000402280.1	chr2	32466101:32466194:32474675:32476670:32477487:32477748,	32474676	32476670	32476663	32476663	Frame_Shift_Del	A	-	p.F90fs
UCEC	TCGA-BS-A0UL-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551296	Frame_Shift_Del	A	-	p.L907fs
UCEC	TCGA-BS-A0UL-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551296	Frame_Shift_Del	A	-	p.L907fs
UCEC	TCGA-BS-A0UL-01	TBC1D1	ENST00000261439.4,ENST00000401554.1,ENST00000407365.1,ENST00000510573.2	chr4	38117520:38117575:38119653:38119813:38126582:38126752,	38119654	38119813	38119751	38119751	Frame_Shift_Del	C	-	p.A967fs
UCEC	TCGA-BS-A0UL-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70763180:70763314:70766221:70766316:70779668:70779723,	70766222	70766316	70766233	70766233	Frame_Shift_Del	T	-	p.F311fs
UCEC	TCGA-BS-A0UL-01	ATXN1	ENST00000244769.4,ENST00000436367.1	chr6	16306567:16307090:16326624:16328701:16486202:16486340,	16326625	16328701	16327823	16327823	Frame_Shift_Del	G	-	p.P240fs
UCEC	TCGA-BS-A0UL-01	CDKAL1	ENST00000274695.4,ENST00000378610.1	chr6	21000457:21000603:21065278:21065459:21108631:21108694,	21065279	21065459	21065431	21065432	Frame_Shift_Ins	-	A	p.A403fs
UCEC	TCGA-BS-A0UL-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845585	63845585	Frame_Shift_Del	A	-	p.K442fs
UCEC	TCGA-BS-A0UL-01	FNBP4	ENST00000263773.5	chr11	47738778:47739064:47741480:47741638:47744527:47744868,	47741481	47741638	47741597	47741598	Frame_Shift_Ins	-	T	p.K949fs
UCEC	TCGA-BS-A0UL-01	SIK3	ENST00000542607.1,ENST00000445177.1,ENST00000446921.2	chr11	116732917:116733043:116734383:116734534:116738661:116738805,	116734384	116734534	116734419	116734419	Frame_Shift_Del	T	-	p.M584fs
UCEC	TCGA-BS-A0UL-01	INO80	ENST00000401393.3,ENST00000361937.3,ENST00000558357.1	chr15	41348819:41348904:41350836:41350979:41352064:41352124,	41350837	41350979	41350942	41350943	Frame_Shift_Ins	-	C	p.V627fs
UCEC	TCGA-BS-A0UL-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.A201fs
UCEC	TCGA-BS-A0UL-01	NLK	ENST00000407008.3,ENST00000496808.1	chr17	26370113:26370357:26449628:26449758:26459645:26459701,	26449629	26449758	26449740	26449740	Frame_Shift_Del	T	-	p.C190fs
UCEC	TCGA-BS-A0UL-01	DAZAP1	ENST00000336761.6,ENST00000585485.1,ENST00000589484.1,ENST00000587079.1,ENST00000233078.4	chr19	1429965:1429995:1430220:1430361:1432512:1432680,	1430221	1430361	1430254	1430254	Frame_Shift_Del	C	-	p.A255fs
UCEC	TCGA-BS-A0UL-01	EEF2	ENST00000309311.6	chr19	3983251:3983289:3984133:3984348:3985375:3985461,	3984134	3984348	3984224	3984225	Frame_Shift_Ins	-	CCTT	p.A43fs
UCEC	TCGA-BS-A0UL-01	ZMYM3	ENST00000489332.1,ENST00000373984.3,ENST00000373982.1	chrX	70471407:70471451:70472438:70473124:70473878:70473977,	70472439	70473124	70472854	70472854	Frame_Shift_Del	C	-	p.G84fs
UCEC	TCGA-BS-A0UL-01	POF1B	ENST00000373145.3,ENST00000262753.4	chrX	84600865:84601048:84606355:84606457:84614554:84614635,	84606356	84606457	84606390	84606391	Frame_Shift_Ins	-	T	p.T169fs
UCEC	TCGA-BS-A0UM-01	PI4KB	ENST00000368874.4,ENST00000368875.2,ENST00000455060.1,ENST00000489889.2,ENST00000271657.5,ENST00000529142.1,ENST00000368873.1,ENST00000368872.1	chr1	151266524:151266614:151266884:151267017:151271283:151271390,	151266885	151267017	151266997	151266997	Frame_Shift_Del	A	-	p.L691fs
UCEC	TCGA-BS-A0UM-01	ATP1A2	ENST00000392233.3,ENST00000447527.1,ENST00000361216.3,ENST00000472488.1	chr1	160104934:160105085:160105223:160105392:160105628:160105783,	160105224	160105392	160105379	160105379	Frame_Shift_Del	G	-	p.T757fs
UCEC	TCGA-BS-A0UM-01	DHX9	ENST00000485081.1,ENST00000367549.3,ENST00000473076.1	chr1	182852454:182852503:182852654:182852770:182853747:182853948,	182852655	182852770	182852698	182852698	Frame_Shift_Del	C	-	p.T1063fs
UCEC	TCGA-BS-A0UM-01	CENPF	ENST00000467765.1,ENST00000366955.3	chr1	214822017:214822170:214825052:214825229:214826170:214826332,	214825053	214825229	214825218	214825221	Frame_Shift_Del	ACAA	-	p.T2717fs
UCEC	TCGA-BS-A0UM-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211018375	211018375	Frame_Shift_Del	T	-	p.N311fs
UCEC	TCGA-BS-A0UM-01	STT3B	ENST00000423527.1,ENST00000295770.2,ENST00000462235.1,ENST00000453168.1	chr3	31621300:31621588:31638289:31638355:31641851:31641951,	31638290	31638355	31638314	31638315	Frame_Shift_Ins	-	T	p.V246fs
UCEC	TCGA-BS-A0UM-01	SETD2	ENST00000409792.3,ENST00000431180.1,ENST00000330022.7	chr3	47098310:47098980:47103652:47103836:47108559:47108608,	47103653	47103836	47103755	47103756	Frame_Shift_Del	TC	-	p.D2131fs
UCEC	TCGA-BS-A0UM-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89042786:89042944:89052212:89052365:89052954:89053069,	89052213	89052365	89052270	89052271	Frame_Shift_Ins	-	T	p.N158fs
UCEC	TCGA-BS-A0UM-01	AP1AR	ENST00000274000.5,ENST00000309703.6	chr4	113186889:113186963:113187743:113187872:113189299:113190833,	113187744	113187872	113187746	113187747	Frame_Shift_Del	CT	-	p.L173fs
UCEC	TCGA-BS-A0UM-01	RWDD4	ENST00000510702.1	chr4	184572136:184572284:184572370:184572476:184580081:184580304,184572136:184572284:184572370:184572476:184577033:184577114,	184572371	184572476	184572381	184572382	Frame_Shift_Ins	-	A	p.F68fs
UCEC	TCGA-BS-A0UM-01	RWDD4	ENST00000327570.9,ENST00000326397.5	chr4	184572136:184572284:184572370:184572480:184577033:184577114,	184572371	184572480	184572381	184572382	Frame_Shift_Ins	-	A	p.F68fs
UCEC	TCGA-BS-A0UM-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515043	186515044	Frame_Shift_Ins	-	C	p.E1158fs
UCEC	TCGA-BS-A0UM-01	OSMR	ENST00000274276.3	chr5	38921719:38921896:38923251:38923356:38924523:38924697,	38923252	38923356	38923329	38923329	Frame_Shift_Del	A	-	p.K615fs
UCEC	TCGA-BS-A0UM-01	HIVEP1	ENST00000487103.1,ENST00000478545.1,ENST00000379388.2,ENST00000491710.1	chr6	12015819:12015901:12089416:12089470:12120122:12120167,	12089417	12089470	12089463	12089463	Frame_Shift_Del	A	-	p.S29fs
UCEC	TCGA-BS-A0UM-01	DCDC2	ENST00000378454.3	chr6	24178557:24178860:24205229:24205330:24278276:24278439,	24205230	24205330	24205282	24205283	Frame_Shift_Ins	-	C	p.A324fs
UCEC	TCGA-BS-A0UM-01	COL12A1	ENST00000416123.2,ENST00000483888.2,ENST00000322507.8	chr6	75875222:75875495:75884753:75885026:75887378:75887651,	75884754	75885026	75884903	75884903	Frame_Shift_Del	C	-	p.G854fs
UCEC	TCGA-BS-A0UM-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5760663:5760803:5764954:5765069:5769062:5769227,	5764955	5765069	5765046	5765046	Frame_Shift_Del	T	-	p.K471fs
UCEC	TCGA-BS-A0UM-01	CCDC136	ENST00000464672.1	chr7	128451853:128452366:128452761:128452983:128454691:128454973,128451853:128452366:128452761:128452983:128461852:128461939,	128452762	128452983	128452961	128452961	Frame_Shift_Del	C	-	p.A914fs
UCEC	TCGA-BS-A0UM-01	ZC3HAV1	ENST00000464606.1,ENST00000471652.1	chr7	138768525:138768778:138774369:138774505:138793769:138794100,	138774370	138774505	138774379	138774379	Frame_Shift_Del	A	-	p.F145fs
UCEC	TCGA-BS-A0UM-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	712394	712397	Frame_Shift_Del	AAAC	-	p.E543fs
UCEC	TCGA-BS-A0UM-01	SETX	ENST00000224140.5,ENST00000393220.1,ENST00000372169.2	chr9	135187143:135187243:135201710:135205886:135206438:135206526,	135201711	135205886	135201742	135201742	Frame_Shift_Del	A	-	p.F1748fs
UCEC	TCGA-BS-A0UM-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712013	89712014	Frame_Shift_Ins	-	G	p.C211fs
UCEC	TCGA-BS-A0UM-01	TRIM5	ENST00000492086.1,ENST00000433961.1	chr11	5686885:5686912:5687210:5687311:5688918:5688941,5686885:5686912:5687210:5687311:5699433:5699664,	5687211	5687311	5687267	5687267	Frame_Shift_Del	T	-	p.N271fs
UCEC	TCGA-BS-A0UM-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874011	104874011	Frame_Shift_Del	T	-	p.N191fs
UCEC	TCGA-BS-A0UM-01	DCTN2	ENST00000434715.3,ENST00000550201.1,ENST00000543672.1,ENST00000548249.1,ENST00000546758.1,ENST00000550954.1,ENST00000549394.1,ENST00000552390.1,ENST00000537439.1	chr12	57927044:57927086:57927735:57927880:57928074:57928235,	57927736	57927880	57927806	57927806	Frame_Shift_Del	G	-	p.P205fs
UCEC	TCGA-BS-A0UM-01	MRPS31	ENST00000323563.6	chr13	41333137:41333242:41340881:41341169:41345120:41345309,	41340882	41341169	41340958	41340959	Frame_Shift_Ins	-	G	p.P121fs
UCEC	TCGA-BS-A0UM-01	WBP4	ENST00000542082.1,ENST00000379487.3	chr13	41642696:41642873:41645662:41645709:41646917:41646993,	41645663	41645709	41645703	41645703	Frame_Shift_Del	A	-	p.L160fs
UCEC	TCGA-BS-A0UM-01	TEP1	ENST00000262715.5,ENST00000556935.1,ENST00000555008.1,ENST00000555727.1	chr14	20852196:20852391:20852549:20852667:20852758:20852872,	20852550	20852667	20852647	20852647	Frame_Shift_Del	C	-	p.G1081fs
UCEC	TCGA-BS-A0UM-01	FAM177A1	ENST00000553955.2	chr14	35515809:35515834:35522483:35522657:35546355:35546422,35515886:35516290:35522483:35522657:35546355:35546422,	35522484	35522657	35522530	35522531	Frame_Shift_Ins	-	A	p.G71fs
UCEC	TCGA-BS-A0UM-01	DLST	ENST00000334212.6,ENST00000238671.7,ENST00000334220.4,ENST00000554612.1	chr14	75366991:75367075:75367768:75367936:75368898:75369155,	75367769	75367936	75367870	75367870	Frame_Shift_Del	C	-	p.N387fs
UCEC	TCGA-BS-A0UM-01	DPEP2	ENST00000575510.1	chr16	68024723:68024842:68025017:68025087:68025740:68025882,68024800:68024900:68025017:68025087:68034350:68034467,	68025018	68025087	68025031	68025032	Frame_Shift_Ins	-	TCGT	p.T240fs
UCEC	TCGA-BS-A0UM-01	DPEP2	ENST00000575510.1	chr16	68024723:68024842:68025017:68025087:68025740:68025882,68024800:68024900:68025017:68025087:68034350:68034467,	68025018	68025087	68025049	68025053	Frame_Shift_Del	TTGTA	-	p.Y233fs
UCEC	TCGA-BS-A0UM-01	PDPR	ENST00000398122.3,ENST00000288050.4,ENST00000568530.1,ENST00000565186.1	chr16	70162861:70163025:70164325:70164447:70166053:70166203,70162861:70163025:70164325:70164447:70165204:70165322,	70164326	70164447	70164370	70164370	Frame_Shift_Del	A	-	p.K218fs
UCEC	TCGA-BS-A0UM-01	ZCCHC14	ENST00000268616.4,ENST00000568020.1,ENST00000561928.1	chr16	87448019:87448147:87448881:87448973:87451065:87451348,	87448882	87448973	87448919	87448919	Frame_Shift_Del	C	-	p.A343fs
UCEC	TCGA-BS-A0UM-01	ASPA	ENST00000456349.2,ENST00000263080.2	chr17	3379427:3379689:3384896:3385092:3386792:3386886,	3384897	3385092	3384897	3384898	Frame_Shift_Ins	-	A	p.G79_splice
UCEC	TCGA-BS-A0UM-01	NF1	ENST00000358273.4,ENST00000471572.2,ENST00000444181.2,ENST00000579081.1,ENST00000356175.3,ENST00000456735.2	chr17	29679274:29679432:29683477:29683600:29683977:29684108,	29683478	29683600	29683557	29683558	Frame_Shift_Ins	-	C	p.T2565fs
UCEC	TCGA-BS-A0UM-01	KANSL1	ENST00000393476.3,ENST00000262419.6	chr17	44171925:44172067:44248220:44249598:44301036:44301170,44171925:44172067:44248220:44249598:44270188:44270272,44171925:44172067:44248220:44249598:44269784:44270166,	44248221	44249598	44248730	44248731	Frame_Shift_Ins	-	C	p.G260fs
UCEC	TCGA-BS-A0UM-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46295003:46295232:46300941:46301137:46305237:46305367,	46300942	46301137	46301053	46301053	Frame_Shift_Del	G	-	p.L489fs
UCEC	TCGA-BS-A0UM-01	COL18A1	ENST00000400337.2	chr21	46825293:46825388:46888155:46888700:46893808:46893895,	46888156	46888700	46888672	46888673	Frame_Shift_Ins	-	G	p.A388fs
UCEC	TCGA-BS-A0UM-01	USP9X	ENST00000324545.8,ENST00000378308.2	chrX	41069761:41069935:41073820:41073962:41075151:41075905,	41073821	41073962	41073946	41073946	Frame_Shift_Del	A	-	p.E1772fs
UCEC	TCGA-BS-A0UM-01	DRP2	ENST00000402866.1,ENST00000395209.3,ENST00000372916.4,ENST00000541709.1,ENST00000538510.1	chrX	100503502:100503588:100505411:100505569:100505905:100506072,	100505412	100505569	100505511	100505512	Frame_Shift_Del	AA	-	p.E547fs
UCEC	TCGA-BS-A0UM-01	FGF13	ENST00000370603.3,ENST00000448673.1,ENST00000436198.1	chrX	137791013:137791090:137939673:137939841:138286220:138286269,	137939674	137939841	137939822	137939823	Frame_Shift_Ins	-	G	p.P23fs
UCEC	TCGA-BS-A0WQ-01	KIAA1217	ENST00000438429.1	chr10	24544256:24544525:24669797:24669996:24721923:24722122,24508554:24508838:24669797:24669996:24721923:24722122,24528123:24528266:24669797:24669996:24721923:24722122,	24669798	24669996	24669809	24669810	Frame_Shift_Ins	-	A	p.P122fs
UCEC	TCGA-BS-A0WQ-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711925	89711926	Frame_Shift_Ins	-	T	p.L181fs
UCEC	TCGA-D1-A0ZO-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-D1-A0ZO-01	CLCNKA	ENST00000491433.1,ENST00000464764.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4	chr1	16353804:16353930:16354315:16354400:16354512:16354614,	16354316	16354400	16354383	16354384	Frame_Shift_Ins	-	T	p.F283fs
UCEC	TCGA-D1-A0ZO-01	DHDDS	ENST00000360009.2,ENST00000434391.2,ENST00000236342.7,ENST00000416052.1	chr1	26772854:26772923:26774049:26774151:26784281:26784396,	26774050	26774151	26774121	26774121	Frame_Shift_Del	G	-	p.W171fs
UCEC	TCGA-D1-A0ZO-01	HIVEP3	ENST00000372583.1,ENST00000247584.5,ENST00000372584.1,ENST00000429157.2	chr1	42041214:42041360:42045407:42050989:42094419:42094618,	42045408	42050989	42048867	42048867	Frame_Shift_Del	A	-	p.P534fs
UCEC	TCGA-D1-A0ZO-01	NEXN	ENST00000457030.1,ENST00000480732.2,ENST00000330010.8,ENST00000334785.7,ENST00000342754.5	chr1	78398966:78399164:78401507:78401729:78407707:78407893,	78401508	78401729	78401649	78401649	Frame_Shift_Del	A	-	p.K465fs
UCEC	TCGA-D1-A0ZO-01	CEPT1	ENST00000357172.4,ENST00000460443.1,ENST00000498239.1,ENST00000478042.1,ENST00000545121.1	chr1	111702001:111702149:111703776:111703918:111717500:111717585,	111703777	111703918	111703835	111703836	Frame_Shift_Ins	-	T	p.M182fs
UCEC	TCGA-D1-A0ZO-01	STAMBP	ENST00000339566.3,ENST00000394070.2,ENST00000394073.1,ENST00000409707.1,ENST00000432295.2,ENST00000478946.1	chr2	74072293:74072389:74074513:74074880:74076489:74076578,	74074514	74074880	74074690	74074691	Frame_Shift_Ins	-	T	p.E184fs
UCEC	TCGA-D1-A0ZO-01	STAMBP	ENST00000536064.1	chr2	74072293:74072389:74074513:74074699:74076489:74076578,	74074514	74074699	74074690	74074691	Frame_Shift_Ins	-	T	p.E184fs
UCEC	TCGA-D1-A0ZO-01	DNAH12	ENST00000495027.1,ENST00000311202.6,ENST00000351747.2,ENST00000389536.4	chr3	57509529:57509611:57528427:57528630:57529923:57530068,	57528428	57528630	57528532	57528532	Frame_Shift_Del	G	-	p.P22fs
UCEC	TCGA-D1-A0ZO-01	EXOSC9	ENST00000511454.1,ENST00000379663.3,ENST00000511132.1,ENST00000503139.1,ENST00000509800.1,ENST00000512454.1,ENST00000243498.5,ENST00000509980.1	chr4	122728694:122728777:122731121:122731254:122732737:122732796,	122731122	122731254	122731125	122731126	Frame_Shift_Del	AT	-	p.T203fs
UCEC	TCGA-D1-A0ZO-01	EXOSC9	ENST00000513654.1	chr4	122728694:122728777:122731121:122731228:122732737:122732826,	122731122	122731228	122731125	122731126	Frame_Shift_Del	AT	-	p.T203fs
UCEC	TCGA-D1-A0ZO-01	SLC30A5	ENST00000396591.3,ENST00000507354.1	chr5	68413169:68413223:68414325:68414455:68417573:68417722,68413169:68413223:68414325:68414455:68417520:68417722,	68414326	68414455	68414387	68414387	Frame_Shift_Del	T	-	p.F501fs
UCEC	TCGA-D1-A0ZO-01	LARS	ENST00000545646.1,ENST00000274562.9,ENST00000510191.1,ENST00000514104.1,ENST00000504323.1,ENST00000394434.2	chr5	145522521:145522647:145522974:145523113:145523829:145523896,	145522975	145523113	145523014	145523014	Frame_Shift_Del	C	-	p.G613fs
UCEC	TCGA-D1-A0ZO-01	GABBR1	ENST00000376977.3,ENST00000377034.4,ENST00000472823.1,ENST00000467259.1,ENST00000377016.4,ENST00000491829.1	chr6	29599270:29599376:29600077:29600162:29600626:29600711,	29600078	29600162	29600119	29600119	Frame_Shift_Del	G	-	p.P15fs
UCEC	TCGA-D1-A0ZO-01	DDR1	ENST00000513514.1	chr6	30861131:30861200:30862364:30862448:30864790:30864823,	30862365	30862448	30862379	30862379	Frame_Shift_Del	C	-	p.P482fs
UCEC	TCGA-D1-A0ZO-01	DDR1	ENST00000465966.1	chr6	30861131:30861200:30862282:30862448:30864790:30864823,	30862283	30862448	30862379	30862379	Frame_Shift_Del	C	-	p.P482fs
UCEC	TCGA-D1-A0ZO-01	ATF6B	ENST00000453203.1,ENST00000375203.3,ENST00000375201.4	chr6	32085099:32085181:32085363:32085471:32085635:32085668,	32085364	32085471	32085448	32085448	Frame_Shift_Del	C	-	p.G483fs
UCEC	TCGA-D1-A0ZO-01	SCML4	ENST00000369025.2	chr6	108029069:108029215:108041906:108042197:108066152:108066347,108029073:108029215:108041906:108042197:108053177:108053307,	108041907	108042197	108042038	108042038	Frame_Shift_Del	C	-	p.G281fs
UCEC	TCGA-D1-A0ZO-01	TIAM2	ENST00000461783.3,ENST00000318981.5,ENST00000367174.2,ENST00000456144.1,ENST00000528535.1	chr6	155448623:155448734:155450351:155451551:155458310:155458746,	155450352	155451551	155450806	155450806	Frame_Shift_Del	C	-	p.T150fs
UCEC	TCGA-D1-A0ZO-01	PLG	ENST00000308192.9	chr6	161152082:161152264:161152776:161152925:161155026:161155120,	161152777	161152925	161152918	161152918	Frame_Shift_Del	A	-	p.E527fs
UCEC	TCGA-D1-A0ZO-01	USP42	ENST00000306177.5,ENST00000465073.2,ENST00000521713.1,ENST00000479544.2,ENST00000426246.2	chr7	6185146:6185287:6185778:6185879:6187369:6187523,	6185779	6185879	6185869	6185869	Frame_Shift_Del	T	-	p.F408fs
UCEC	TCGA-D1-A0ZO-01	IL6	ENST00000406575.1,ENST00000404625.1,ENST00000426291.1,ENST00000258743.5	chr7	22766858:22766900:22767062:22767253:22768311:22768425,	22767063	22767253	22767134	22767134	Frame_Shift_Del	C	-	p.P31fs
UCEC	TCGA-D1-A0ZO-01	IL6	ENST00000401630.3	chr7	22766858:22766900:22767131:22767253:22768311:22768425,	22767132	22767253	22767134	22767134	Frame_Shift_Del	C	-	p.P31fs
UCEC	TCGA-D1-A0ZO-01	ABCB4	ENST00000545634.1,ENST00000265723.4,ENST00000358400.3,ENST00000359206.3,ENST00000453593.1	chr7	87049313:87049391:87051436:87051541:87053221:87053368,	87051437	87051541	87051452	87051452	Frame_Shift_Del	A	-	p.F767fs
UCEC	TCGA-D1-A0ZO-01	DNAJC2	ENST00000249270.7,ENST00000379263.3	chr7	102962378:102962528:102962957:102963079:102963149:102963241,	102962958	102963079	102963046	102963046	Frame_Shift_Del	T	-	p.K282fs
UCEC	TCGA-D1-A0ZO-01	SCRIB	ENST00000320476.3	chr8	144895987:144896066:144896170:144896288:144897383:144897549,	144896171	144896288	144896280	144896281	Frame_Shift_Ins	-	A	p.F56fs
UCEC	TCGA-D1-A0ZO-01	RALGPS1	ENST00000319107.4	chr9	129796709:129796793:129815125:129815218:129831508:129831634,	129815126	129815218	129815153	129815154	Frame_Shift_Del	TC	-	p.S140fs
UCEC	TCGA-D1-A0ZO-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845592	63845607	Frame_Shift_Del	TCAAACATGAAATACC	-	p.I444fs
UCEC	TCGA-D1-A0ZO-01	TBC1D12	ENST00000225235.4	chr10	96282100:96282210:96290958:96291217:96292784:96293054,	96290959	96291217	96291203	96291203	Frame_Shift_Del	A	-	p.K749fs
UCEC	TCGA-D1-A0ZO-01	COL17A1	ENST00000353479.5	chr10	105799730:105799757:105800108:105800168:105800822:105800876,	105800109	105800168	105800129	105800129	Frame_Shift_Del	G	-	p.P914fs
UCEC	TCGA-D1-A0ZO-01	TACC2	ENST00000453444.2,ENST00000334433.3,ENST00000369005.1,ENST00000515273.1,ENST00000515603.1	chr10	123809952:123810065:123842161:123847474:123847992:123848087,	123842162	123847474	123844356	123844356	Frame_Shift_Del	C	-	p.P781fs
UCEC	TCGA-D1-A0ZO-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1269665	1269665	Frame_Shift_Del	C	-	p.T3852fs
UCEC	TCGA-D1-A0ZO-01	ST5	ENST00000526099.1,ENST00000534127.1,ENST00000526757.1,ENST00000313726.6,ENST00000530991.1,ENST00000357665.1,ENST00000530438.1,ENST00000533020.1	chr11	8732391:8732461:8732668:8732778:8734097:8734267,	8732669	8732778	8732677	8732678	Frame_Shift_Del	CT	-	p.E758fs
UCEC	TCGA-D1-A0ZO-01	NAA16	ENST00000379406.3,ENST00000403412.3,ENST00000464857.1,ENST00000379367.3	chr13	41905409:41905505:41929279:41929352:41932439:41932609,41910785:41910892:41929279:41929352:41932439:41932609,	41929280	41929352	41929337	41929337	Frame_Shift_Del	T	-	p.F358fs
UCEC	TCGA-D1-A0ZO-01	ARHGAP5	ENST00000432921.1	chr14	32546514:32546641:32559707:32563592:32586345:32586493,32546190:32546259:32559707:32563592:32586348:32586493,32546190:32546259:32559707:32563592:32586345:32586493,32546514:32546641:32559707:32563592:32586348:32586493,	32559708	32563592	32560800	32560800	Frame_Shift_Del	T	-	p.L309fs
UCEC	TCGA-D1-A0ZO-01	SHF	ENST00000290894.8	chr15	45470362:45470504:45490969:45491318:45492924:45493069,	45490970	45491318	45491044	45491045	Frame_Shift_Del	TC	-	p.Q76fs
UCEC	TCGA-D1-A0ZO-01	ZNF609	ENST00000326648.3	chr15	64962544:64962632:64966114:64968455:64970314:64970681,	64966115	64968455	64967247	64967247	Frame_Shift_Del	A	-	p.K732fs
UCEC	TCGA-D1-A0ZO-01	CHD9	ENST00000447540.1	chr16	53330867:53331070:53337631:53338537:53340148:53340309,53330867:53331070:53337631:53338537:53340145:53340309,	53337632	53338537	53338352	53338352	Frame_Shift_Del	C	-	p.S2145fs
UCEC	TCGA-D1-A0ZO-01	CES3	ENST00000543856.1,ENST00000394037.1,ENST00000303334.4	chr16	67003581:67003662:67005074:67005222:67006258:67006408,	67005075	67005222	67005109	67005109	Frame_Shift_Del	A	-	p.D393fs
UCEC	TCGA-D1-A0ZO-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
UCEC	TCGA-D1-A0ZO-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17696624	17696624	Frame_Shift_Del	G	-	p.W121fs
UCEC	TCGA-D1-A0ZO-01	FHOD3	ENST00000592128.1,ENST00000590592.1,ENST00000257209.4,ENST00000445677.1,ENST00000359247.4,ENST00000592930.1,ENST00000591635.1	chr18	34298519:34298678:34310608:34310767:34320618:34320801,	34310609	34310767	34310695	34310696	Frame_Shift_Ins	-	C	p.L1168fs
UCEC	TCGA-D1-A0ZO-01	CTIF	ENST00000256413.3,ENST00000591387.1,ENST00000382998.4,ENST00000587752.1,ENST00000588345.1	chr18	46145908:46146116:46162984:46163056:46190122:46190182,	46162985	46163056	46163043	46163043	Frame_Shift_Del	C	-	p.A80fs
UCEC	TCGA-D1-A0ZO-01	ZNFX1	ENST00000396105.1,ENST00000371754.4,ENST00000371752.1	chr20	47871031:47871186:47872344:47872484:47873953:47874201,	47872345	47872484	47872451	47872451	Frame_Shift_Del	T	-	p.R900fs
UCEC	TCGA-D1-A0ZO-01	COL20A1	ENST00000435874.1,ENST00000358894.6,ENST00000326996.6,ENST00000422202.1	chr20	61940684:61940849:61941109:61941267:61941732:61941862,	61941110	61941267	61941257	61941257	Frame_Shift_Del	C	-	p.T418fs
UCEC	TCGA-D1-A0ZO-01	COL20A1	ENST00000479501.1	chr20	61940684:61940849:61941106:61941267:61941732:61941862,	61941107	61941267	61941257	61941257	Frame_Shift_Del	C	-	p.T418fs
UCEC	TCGA-D1-A0ZO-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40661353	40661353	Frame_Shift_Del	A	-	p.P373fs
UCEC	TCGA-D1-A0ZO-01	FAAH2	ENST00000374900.4	chrX	57337025:57337162:57358030:57358240:57367703:57367823,	57358031	57358240	57358078	57358078	Frame_Shift_Del	A	-	p.K154fs
UCEC	TCGA-D1-A0ZP-01	ZNF683	ENST00000349618.3,ENST00000374204.1,ENST00000403843.1,ENST00000436292.1	chr1	26689516:26689645:26691022:26691717:26694083:26694138,	26691023	26691717	26691253	26691254	Frame_Shift_Ins	-	T	p.Q261fs
UCEC	TCGA-D1-A0ZP-01	BIRC6	ENST00000421745.2	chr2	32692970:32693179:32693504:32693851:32694462:32694682,	32693505	32693851	32693528	32693529	Frame_Shift_Ins	-	G	p.L1935fs
UCEC	TCGA-D1-A0ZP-01	NAGK	ENST00000472519.1	chr2	71300666:71300724:71302684:71303831:71304687:71304735,	71302685	71303831	71302698	71302699	Frame_Shift_Ins	-	A	p.L147fs
UCEC	TCGA-D1-A0ZP-01	NAGK	ENST00000529236.1	chr2	71300666:71300724:71302684:71302740:71303733:71303771,	71302685	71302740	71302698	71302699	Frame_Shift_Ins	-	A	p.L147fs
UCEC	TCGA-D1-A0ZP-01	NAGK	ENST00000475709.1,ENST00000479854.1,ENST00000443872.2,ENST00000418807.3,ENST00000531934.1,ENST00000450272.1,ENST00000443938.2,ENST00000455662.2,ENST00000244204.6,ENST00000489309.1	chr2	71300666:71300724:71302684:71302772:71303733:71303771,	71302685	71302772	71302698	71302699	Frame_Shift_Ins	-	A	p.L147fs
UCEC	TCGA-D1-A0ZP-01	NAGK	ENST00000524736.1	chr2	71300611:71300724:71302691:71302772:71303733:71303771,	71302692	71302772	71302698	71302699	Frame_Shift_Ins	-	A	p.L147fs
UCEC	TCGA-D1-A0ZP-01	BAP1	ENST00000296288.5,ENST00000471532.1,ENST00000460680.1	chr3	52440844:52440923:52441189:52441332:52441414:52441476,	52441190	52441332	52441327	52441328	Frame_Shift_Ins	-	C	p.E148fs
UCEC	TCGA-D1-A0ZP-01	HNRNPD	ENST00000507010.1	chr4	83292680:83292737:83294598:83294890:83295271:83295297,	83294599	83294890	83294711	83294711	Frame_Shift_Del	C	-	p.A41fs
UCEC	TCGA-D1-A0ZP-01	HNRNPD	ENST00000503822.1	chr4	83280721:83280792:83294598:83294930:83295271:83295297,	83294599	83294930	83294711	83294711	Frame_Shift_Del	C	-	p.A41fs
UCEC	TCGA-D1-A0ZP-01	TPD52L1	ENST00000528193.1,ENST00000534199.1,ENST00000392483.2,ENST00000392482.2,ENST00000534000.1,ENST00000368402.5,ENST00000532429.1,ENST00000532978.1,ENST00000524679.1,ENST00000527711.1,ENST00000368388.2,ENST00000534368.1,ENST00000304877.13	chr6	125541223:125541339:125550263:125550412:125569427:125569506,	125550264	125550412	125550267	125550268	Frame_Shift_Ins	-	A	p.E47fs
UCEC	TCGA-D1-A0ZP-01	PABPC1	ENST00000519100.1,ENST00000318607.5,ENST00000519622.1,ENST00000519596.1,ENST00000519004.1,ENST00000522387.1	chr8	101724609:101724685:101724879:101725017:101725314:101725409,	101724880	101725017	101724929	101724930	Frame_Shift_Del	AG	-	p.L276fs
UCEC	TCGA-D1-A0ZP-01	PABPC1	ENST00000519100.1,ENST00000318607.5,ENST00000519622.1,ENST00000519596.1,ENST00000519004.1,ENST00000522387.1	chr8	101724609:101724685:101724879:101725017:101725314:101725409,	101724880	101725017	101724932	101724941	Frame_Shift_Del	TCCGTCTGCC	-	p.R272fs
UCEC	TCGA-D1-A0ZP-01	EHD1	ENST00000359393.2,ENST00000320631.3,ENST00000421510.1	chr11	64622083:64622329:64622793:64622958:64627395:64627517,	64622794	64622958	64622811	64622812	Frame_Shift_Ins	-	C	p.P368fs
UCEC	TCGA-D1-A0ZP-01	B4GALNT3	ENST00000322843.3,ENST00000266383.5,ENST00000544638.1	chr12	654534:654635:655811:655879:657189:657268,	655812	655879	655868	655869	Frame_Shift_Ins	-	A	p.S232fs
UCEC	TCGA-D1-A0ZP-01	NR4A1	ENST00000243050.1,ENST00000360284.3,ENST00000545748.1,ENST00000394825.1,ENST00000550082.1,ENST00000394824.2	chr12	52445246:52445352:52450277:52450429:52450840:52451043,52449813:52449943:52450277:52450429:52450840:52451043,	52450278	52450429	52450307	52450308	Frame_Shift_Ins	-	G	p.R346fs
UCEC	TCGA-D1-A0ZP-01	OXA1L	ENST00000481218.1,ENST00000285848.5,ENST00000604262.1,ENST00000495424.1,ENST00000358043.5	chr14	23240275:23240389:23240476:23240557:23240642:23240980,	23240477	23240557	23240479	23240480	Frame_Shift_Ins	-	G	p.W429fs
UCEC	TCGA-D1-A0ZP-01	PDK2	ENST00000512204.1,ENST00000503176.1,ENST00000007708.3,ENST00000506647.1	chr17	48185975:48186083:48186650:48186764:48187320:48187348,	48186651	48186764	48186678	48186679	Frame_Shift_Ins	-	C	p.S333fs
UCEC	TCGA-D1-A0ZQ-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685289	89685289	Frame_Shift_Del	A	-	p.K62fs
UCEC	TCGA-D1-A0ZR-01	KANSL1L	ENST00000452086.1,ENST00000418791.1	chr2	210993754:210993896:211018218:211019335:211035872:211036051,	211018219	211019335	211018902	211018906	Frame_Shift_Del	CTTTT	-	p.K134fs
UCEC	TCGA-D1-A0ZR-01	SREK1	ENST00000380918.3,ENST00000519259.1,ENST00000522912.1,ENST00000334121.6,ENST00000520953.1,ENST00000284041.3	chr5	65465884:65465998:65466412:65466775:65470773:65470869,	65466413	65466775	65466497	65466500	Frame_Shift_Del	AAAG	-	p.E402fs
UCEC	TCGA-D1-A0ZR-01	TTI2	ENST00000360742.5,ENST00000431156.2	chr8	33361265:33361453:33364746:33364839:33367263:33367303,	33364747	33364839	33364785	33364788	Frame_Shift_Del	AAAT	-	p.I296fs
UCEC	TCGA-D1-A0ZR-01	RC3H2	ENST00000471874.2,ENST00000335387.5,ENST00000373665.2,ENST00000423239.2,ENST00000357244.2,ENST00000498479.1	chr9	125652590:125652824:125655187:125655305:125659557:125659813,	125655188	125655305	125655293	125655294	Frame_Shift_Del	GA	-	p.H81fs
UCEC	TCGA-D1-A0ZR-01	SFXN4	ENST00000330036.6,ENST00000419372.1,ENST00000462913.1,ENST00000466218.1	chr10	120919239:120919265:120920426:120920481:120921851:120921926,	120920427	120920481	120920478	120920478	Frame_Shift_Del	T	-	p.T95fs
UCEC	TCGA-D1-A0ZR-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107300005	107300005	Frame_Shift_Del	T	-	p.Y318fs
UCEC	TCGA-D1-A0ZS-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.P2802fs
UCEC	TCGA-D1-A0ZS-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39833819:39833986:39835701:39835858:39838150:39838268,	39835702	39835858	39835816	39835817	Frame_Shift_Del	TA	-	p.S2791fs
UCEC	TCGA-D1-A0ZS-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43898659:43898861:43900056:43900156:43900870:43901000,	43900057	43900156	43900076	43900076	Frame_Shift_Del	G	-	p.G1043fs
UCEC	TCGA-D1-A0ZS-01	LRRC8B	ENST00000330947.2,ENST00000439853.1,ENST00000358200.4	chr1	90045149:90045247:90048183:90050348:90058329:90058936,	90048184	90050348	90049263	90049264	Frame_Shift_Ins	-	A	p.E352fs
UCEC	TCGA-D1-A0ZS-01	CRTC2	ENST00000368633.1,ENST00000303569.6,ENST00000461638.2	chr1	153921741:153921860:153923735:153924142:153924493:153924738,	153923736	153924142	153923864	153923864	Frame_Shift_Del	G	-	p.H426fs
UCEC	TCGA-D1-A0ZS-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.V377fs
UCEC	TCGA-D1-A0ZS-01	SLC6A6	ENST00000458124.1,ENST00000427436.1	chr3	14509360:14509464:14513712:14513825:14518712:14518850,	14513713	14513825	14513785	14513785	Frame_Shift_Del	T	-	p.L390fs
UCEC	TCGA-D1-A0ZS-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281435	142281435	Frame_Shift_Del	A	-	p.F270fs
UCEC	TCGA-D1-A0ZS-01	BST1	ENST00000265016.4,ENST00000514989.1,ENST00000505785.1,ENST00000514445.1,ENST00000382346.3	chr4	15716950:15716984:15717329:15717422:15720529:15720616,	15717330	15717422	15717330	15717330	Frame_Shift_Del	T	-	p.G204_splice
UCEC	TCGA-D1-A0ZS-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985083	36985083	Frame_Shift_Del	A	-	p.K601fs
UCEC	TCGA-D1-A0ZS-01	PDLIM4	ENST00000253754.3,ENST00000379018.3,ENST00000418373.1	chr5	131602156:131602238:131606607:131606786:131606995:131607029,	131606608	131606786	131606779	131606779	Frame_Shift_Del	C	-	p.P167fs
UCEC	TCGA-D1-A0ZS-01	CDC25C	ENST00000348983.3,ENST00000513970.1,ENST00000356505.3,ENST00000514555.1,ENST00000323760.6,ENST00000357274.3,ENST00000415130.2	chr5	137626327:137626429:137627658:137627805:137654907:137655063,	137627659	137627805	137627690	137627690	Frame_Shift_Del	T	-	p.K322fs
UCEC	TCGA-D1-A0ZS-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975473	13975473	Frame_Shift_Del	G	-	p.P138fs
UCEC	TCGA-D1-A0ZS-01	ADAM18	ENST00000379866.1,ENST00000265707.5	chr8	39502856:39502993:39505862:39506046:39521313:39521409,	39505863	39506046	39506041	39506041	Frame_Shift_Del	A	-	p.K409fs
UCEC	TCGA-D1-A0ZS-01	PAX5	ENST00000522003.1,ENST00000414447.1,ENST00000377853.2,ENST00000358127.4,ENST00000520281.1	chr9	36846839:36846926:36923351:36923481:36966545:36966721,36882000:36882102:36923351:36923481:36966545:36966586,	36923352	36923481	36923410	36923410	Frame_Shift_Del	G	-	p.P284fs
UCEC	TCGA-D1-A0ZS-01	NAA35	ENST00000361671.5	chr9	88611313:88611492:88618499:88618559:88622272:88622379,	88618500	88618559	88618501	88618502	Frame_Shift_Ins	-	T	p.D353fs
UCEC	TCGA-D1-A0ZS-01	STAMBPL1	ENST00000371927.3,ENST00000371926.3,ENST00000371924.1	chr10	90670672:90670768:90672857:90673215:90674290:90674415,	90672858	90673215	90672881	90672882	Frame_Shift_Ins	-	A	p.L148fs
UCEC	TCGA-D1-A0ZS-01	NR1H3	ENST00000531660.1	chr11	47281341:47281530:47282791:47283000:47283469:47283525,	47282792	47283000	47282887	47282887	Frame_Shift_Del	C	-	p.P199fs
UCEC	TCGA-D1-A0ZS-01	NUMA1	ENST00000393695.3,ENST00000540843.1,ENST00000351960.6,ENST00000537905.1,ENST00000537217.1,ENST00000535087.1,ENST00000366394.3	chr11	71740250:71740336:71746947:71747021:71752004:71752132,71740250:71740336:71746947:71747021:71780887:71780957,	71746948	71747021	71746965	71746965	Frame_Shift_Del	C	-	p.A9fs
UCEC	TCGA-D1-A0ZS-01	NAP1L1	ENST00000552147.1,ENST00000542344.1	chr12	76448827:76448870:76449812:76449938:76453577:76453658,	76449813	76449938	76449900	76449900	Frame_Shift_Del	T	-	p.K157fs
UCEC	TCGA-D1-A0ZS-01	NAP1L1	ENST00000535020.2,ENST00000547529.2,ENST00000547773.1,ENST00000393263.3,ENST00000544816.1,ENST00000549596.1,ENST00000548273.1,ENST00000548044.1,ENST00000551992.1,ENST00000261182.8,ENST00000552056.1	chr12	76448827:76448870:76449812:76449941:76453917:76454059,76448827:76448870:76449812:76449941:76453577:76453658,	76449813	76449941	76449900	76449900	Frame_Shift_Del	T	-	p.K157fs
UCEC	TCGA-D1-A0ZS-01	LRRIQ1	ENST00000525971.2,ENST00000393217.2	chr12	85445954:85446029:85449324:85450962:85459039:85459192,	85449325	85450962	85450016	85450016	Frame_Shift_Del	A	-	p.E482fs
UCEC	TCGA-D1-A0ZS-01	TCHP	ENST00000544838.1,ENST00000405876.4,ENST00000312777.5	chr12	110342541:110342598:110344376:110344445:110345330:110345504,	110344377	110344445	110344435	110344435	Frame_Shift_Del	A	-	p.E172fs
UCEC	TCGA-D1-A0ZS-01	GABRB3	ENST00000541819.2,ENST00000311550.5,ENST00000299267.4	chr15	26828478:26828561:26866460:26866681:27017548:27017616,	26866461	26866681	26866538	26866539	Frame_Shift_Ins	-	T	p.K184fs
UCEC	TCGA-D1-A0ZS-01	PRR14	ENST00000542965.2,ENST00000300835.4,ENST00000567322.1,ENST00000287463.4	chr16	30665550:30665660:30665949:30666535:30666671:30666741,	30665950	30666535	30666121	30666121	Frame_Shift_Del	C	-	p.S277fs
UCEC	TCGA-D1-A0ZS-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	AA	p.A201fs
UCEC	TCGA-D1-A0ZS-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P597fs
UCEC	TCGA-D1-A0ZS-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.G606fs
UCEC	TCGA-D1-A0ZS-01	RECQL5	ENST00000423245.2,ENST00000443199.2,ENST00000317905.5	chr17	73624751:73624842:73625013:73625555:73625787:73625922,	73625014	73625555	73625328	73625328	Frame_Shift_Del	C	-	p.G725fs
UCEC	TCGA-D1-A0ZS-01	TMEM143	ENST00000435956.3	chr19	48863328:48863433:48866547:48866788:48867154:48867178,48848529:48848611:48866547:48866788:48867154:48867178,	48866548	48866788	48866688	48866688	Frame_Shift_Del	G	-	p.R42fs
UCEC	TCGA-D1-A0ZS-01	ATF5	ENST00000423777.2,ENST00000595125.1	chr19	50432499:50432657:50433988:50434285:50435678:50435865,	50433989	50434285	50434211	50434211	Frame_Shift_Del	C	-	p.A35fs
UCEC	TCGA-D1-A0ZU-01	FAF1	ENST00000487898.1,ENST00000396153.2,ENST00000371778.4	chr1	51210355:51210447:51253671:51253877:51267302:51267349,	51253672	51253877	51253812	51253812	Frame_Shift_Del	G	-	p.P76fs
UCEC	TCGA-D1-A0ZU-01	AP1G2	ENST00000555896.1,ENST00000556743.1,ENST00000535852.2,ENST00000460049.2	chr14	24034814:24034910:24035024:24035369:24035486:24035628,	24035025	24035369	24035308	24035311	Frame_Shift_Del	GGGA	-	p.L177fs
UCEC	TCGA-D1-A0ZU-01	AP1G2	ENST00000465445.2,ENST00000556277.1	chr14	24034814:24034910:24035272:24035369:24035486:24035628,	24035273	24035369	24035308	24035311	Frame_Shift_Del	GGGA	-	p.L177fs
UCEC	TCGA-D1-A0ZV-01	TAF2	ENST00000523904.1,ENST00000378164.2	chr8	120803563:120803699:120805605:120805691:120807771:120807871,	120805606	120805691	120805658	120805658	Frame_Shift_Del	T	-	p.T409fs
UCEC	TCGA-D1-A0ZZ-01	FAF1	ENST00000487898.1,ENST00000396153.2,ENST00000371778.4	chr1	51210355:51210447:51253671:51253877:51267302:51267349,	51253672	51253877	51253812	51253812	Frame_Shift_Del	G	-	p.P76fs
UCEC	TCGA-D1-A0ZZ-01	PEAK1	ENST00000560626.2	chr15	77450844:77451038:77471131:77474382:77544708:77544868,	77471132	77474382	77472763	77472764	Frame_Shift_Ins	-	T	p.S502fs
UCEC	TCGA-D1-A0ZZ-01	CHD6	ENST00000373233.3,ENST00000309279.7	chr20	40143558:40143591:40161688:40162209:40246978:40247014,40143558:40143591:40161688:40162209:40179943:40179999,	40161689	40162209	40161945	40161945	Frame_Shift_Del	C	-	p.E100fs
UCEC	TCGA-D1-A0ZZ-01	CHD6	ENST00000373233.3,ENST00000309279.7	chr20	40143558:40143591:40161688:40162209:40246978:40247014,40143558:40143591:40161688:40162209:40179943:40179999,	40161689	40162209	40161954	40161955	Frame_Shift_Del	TC	-	p.R96fs
UCEC	TCGA-D1-A101-01	CLCNKA	ENST00000464764.1,ENST00000375692.1,ENST00000420078.1,ENST00000439316.2,ENST00000331433.4,ENST00000495784.1	chr1	16348546:16348558:16349107:16349214:16350294:16350409,	16349108	16349214	16349176	16349177	Frame_Shift_Ins	-	G	p.L21fs
UCEC	TCGA-D1-A101-01	PHACTR4	ENST00000463428.1,ENST00000373839.3	chr1	28733920:28733974:28785595:28785769:28786722:28786803,	28785596	28785769	28785730	28785730	Frame_Shift_Del	A	-	p.K61fs
UCEC	TCGA-D1-A101-01	WDR47	ENST00000530772.1,ENST00000400794.3,ENST00000369965.4,ENST00000369962.3,ENST00000528747.1	chr1	109556471:109556547:109560139:109560223:109565976:109566143,	109560140	109560223	109560141	109560141	Frame_Shift_Del	T	-	p.R81_splice
UCEC	TCGA-D1-A101-01	PIAS3	ENST00000369298.1,ENST00000475261.1,ENST00000393045.2	chr1	145581403:145581564:145583914:145584048:145584128:145584297,	145583915	145584048	145584022	145584023	Frame_Shift_Ins	-	C	p.C418fs
UCEC	TCGA-D1-A101-01	ARHGEF2	ENST00000368316.1,ENST00000361247.4,ENST00000313695.7,ENST00000313667.4,ENST00000368315.4,ENST00000470975.2,ENST00000462460.2	chr1	155922593:155922619:155924692:155924760:155927503:155927673,	155924693	155924760	155924735	155924735	Frame_Shift_Del	G	-	p.L625fs
UCEC	TCGA-D1-A101-01	LOXL3	ENST00000264094.3,ENST00000409549.1,ENST00000409249.1	chr2	74763417:74763598:74763835:74764055:74776495:74776586,	74763836	74764055	74763924	74763924	Frame_Shift_Del	C	-	p.G275fs
UCEC	TCGA-D1-A101-01	IL18RAP	ENST00000264260.2	chr2	103039637:103039807:103040270:103040595:103040690:103040874,	103040271	103040595	103040281	103040281	Frame_Shift_Del	A	-	p.T27fs
UCEC	TCGA-D1-A101-01	FN1	ENST00000357009.2	chr2	216232585:216232750:216236631:216236738:216238044:216238133,	216236632	216236738	216236721	216236722	Frame_Shift_Del	GA	-	p.S2208fs
UCEC	TCGA-D1-A101-01	TRIP12	ENST00000389044.4,ENST00000409677.1,ENST00000543084.1	chr2	230725121:230725247:230744697:230744844:230786595:230786619,	230744698	230744844	230744763	230744763	Frame_Shift_Del	C	-	p.G11fs
UCEC	TCGA-D1-A101-01	HDLBP	ENST00000427487.1	chr2	242179225:242179235:242179315:242179579:242181874:242181955,	242179316	242179579	242179466	242179467	Frame_Shift_Ins	-	C	p.G747fs
UCEC	TCGA-D1-A101-01	HDLBP	ENST00000373292.4,ENST00000479169.1,ENST00000427183.2,ENST00000391975.1,ENST00000391976.2,ENST00000487169.1,ENST00000459788.1,ENST00000310931.4	chr2	242179225:242179235:242179315:242179537:242181874:242181955,	242179316	242179537	242179466	242179467	Frame_Shift_Ins	-	C	p.G747fs
UCEC	TCGA-D1-A101-01	DNAH12	ENST00000495027.1,ENST00000351747.2	chr3	57440501:57440621:57443447:57443730:57443825:57443947,	57443448	57443730	57443646	57443646	Frame_Shift_Del	T	-	p.K1023fs
UCEC	TCGA-D1-A101-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408081	179408081	Frame_Shift_Del	T	-	p.I116fs
UCEC	TCGA-D1-A101-01	CETN3	ENST00000518458.1	chr5	89695288:89695366:89701505:89701616:89703515:89703647,	89701506	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
UCEC	TCGA-D1-A101-01	CETN3	ENST00000522864.1,ENST00000283122.3,ENST00000522083.1,ENST00000522565.1	chr5	89695288:89695366:89701501:89701616:89703515:89703647,	89701502	89701616	89701581	89701581	Frame_Shift_Del	T	-	p.K63fs
UCEC	TCGA-D1-A101-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Del	GA	-	p.R889fs
UCEC	TCGA-D1-A101-01	BTNL8	ENST00000400707.3,ENST00000511704.1,ENST00000533815.2,ENST00000513442.1,ENST00000340184.4,ENST00000505126.1	chr5	180338488:180338614:180374511:180374625:180375354:180375375,	180374512	180374625	180374580	180374580	Frame_Shift_Del	T	-	p.F248fs
UCEC	TCGA-D1-A101-01	BTNL8	ENST00000231229.4	chr5	180338488:180338614:180374511:180374755:180375919:180375946,180338488:180338614:180374511:180374755:180375354:180375375,	180374512	180374755	180374580	180374580	Frame_Shift_Del	T	-	p.F248fs
UCEC	TCGA-D1-A101-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351590	74351590	Frame_Shift_Del	A	-	p.Y117fs
UCEC	TCGA-D1-A101-01	SENP6	ENST00000370010.2,ENST00000541192.1,ENST00000370014.3,ENST00000503501.1,ENST00000447266.2	chr6	76423228:76423297:76423390:76423541:76425100:76425593,	76423391	76423541	76423416	76423416	Frame_Shift_Del	A	-	p.K1002fs
UCEC	TCGA-D1-A101-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158924532	158924532	Frame_Shift_Del	C	-	p.L1279fs
UCEC	TCGA-D1-A101-01	TNRC18	ENST00000399537.4,ENST00000430969.1	chr7	5399028:5399200:5401224:5401353:5401527:5401658,	5401225	5401353	5401259	5401259	Frame_Shift_Del	G	-	p.R1543fs
UCEC	TCGA-D1-A101-01	EPHB6	ENST00000422643.1,ENST00000466783.1,ENST00000442129.1,ENST00000392957.2	chr7	142560888:142561085:142561388:142561453:142561723:142562020,	142561389	142561453	142561448	142561448	Frame_Shift_Del	G	-	p.G54fs
UCEC	TCGA-D1-A101-01	PRKAG2	ENST00000488258.1	chr7	151292430:151292540:151372505:151372723:151478237:151478517,	151372506	151372723	151372597	151372597	Frame_Shift_Del	G	-	p.P198fs
UCEC	TCGA-D1-A101-01	MCM4	ENST00000262105.2,ENST00000523944.1	chr8	48883070:48883436:48883900:48884028:48885416:48885624,	48883901	48884028	48883979	48883979	Frame_Shift_Del	A	-	p.K627fs
UCEC	TCGA-D1-A101-01	RNF19A	ENST00000341084.2	chr8	101287180:101287389:101299728:101300495:101322094:101322138,	101299729	101300495	101300216	101300216	Frame_Shift_Del	T	-	p.R63fs
UCEC	TCGA-D1-A101-01	SPAG8	ENST00000475644.1	chr9	35808127:35808303:35809400:35810306:35810435:35810537,	35809401	35810306	35809444	35809444	Frame_Shift_Del	C	-	p.G443fs
UCEC	TCGA-D1-A101-01	SPAG8	ENST00000340291.2	chr9	35808127:35808303:35809400:35809509:35810243:35810288,	35809401	35809509	35809444	35809444	Frame_Shift_Del	C	-	p.G443fs
UCEC	TCGA-D1-A101-01	HPS1	ENST00000361490.4,ENST00000325103.6,ENST00000467246.1,ENST00000498219.1,ENST00000359632.3	chr10	100185662:100185742:100186971:100187021:100189329:100189399,	100186972	100187021	100186987	100186987	Frame_Shift_Del	G	-	p.P324fs
UCEC	TCGA-D1-A101-01	SYTL2	ENST00000525423.1,ENST00000525702.1,ENST00000359152.5,ENST00000389958.3,ENST00000389959.4,ENST00000527523.1,ENST00000354566.3,ENST00000528231.1,ENST00000316356.4,ENST00000529581.1,ENST00000524452.1,ENST00000389960.4,ENST00000532995.1,ENST00000530351.1,ENST00000533892.1	chr11	85411557:85411636:85415900:85416071:85418471:85418574,	85415901	85416071	85416056	85416057	Frame_Shift_Ins	-	T	p.K706fs
UCEC	TCGA-D1-A101-01	PTPN6	ENST00000539029.1,ENST00000447931.2,ENST00000416215.2,ENST00000399448.1,ENST00000318974.9,ENST00000537533.1	chr12	7069250:7069402:7069506:7069598:7069968:7070108,	7069507	7069598	7069549	7069549	Frame_Shift_Del	C	-	p.P542fs
UCEC	TCGA-D1-A101-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577802	14577802	Frame_Shift_Del	A	-	p.E318fs
UCEC	TCGA-D1-A101-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920933	57920934	Frame_Shift_Ins	-	C	p.A669fs
UCEC	TCGA-D1-A101-01	ARHGEF25	ENST00000477314.1	chr12	58010165:58010278:58010566:58011071:58013093:58013162,	58010567	58011071	58010581	58010581	Frame_Shift_Del	C	-	p.I549fs
UCEC	TCGA-D1-A101-01	RBM19	ENST00000545145.2	chr12	114254546:114255991:114261013:114261126:114282472:114282593,	114261014	114261126	114261120	114261120	Frame_Shift_Del	G	-	p.P931fs
UCEC	TCGA-D1-A101-01	CCDC62	ENST00000392440.2,ENST00000537566.1,ENST00000253079.6	chr12	123297816:123297966:123307912:123308006:123310968:123311164,	123307913	123308006	123307941	123307941	Frame_Shift_Del	A	-	p.Q677fs
UCEC	TCGA-D1-A101-01	CLMN	ENST00000556454.1,ENST00000298912.4	chr14	95660872:95660933:95662834:95663031:95669174:95670800,	95662835	95663031	95662948	95662949	Frame_Shift_Ins	-	T	p.K865fs
UCEC	TCGA-D1-A101-01	RAP1GAP2	ENST00000574515.1	chr17	2901514:2901670:2908634:2908734:2909248:2909335,	2908635	2908734	2908717	2908717	Frame_Shift_Del	C	-	p.P419fs
UCEC	TCGA-D1-A101-01	RAP1GAP2	ENST00000540393.2,ENST00000542807.1,ENST00000254695.8,ENST00000366401.4	chr17	2901514:2901670:2908662:2908734:2909248:2909335,	2908663	2908734	2908717	2908717	Frame_Shift_Del	C	-	p.P419fs
UCEC	TCGA-D1-A101-01	NLRP1	ENST00000577119.1,ENST00000571451.2,ENST00000345221.3,ENST00000571307.1,ENST00000544378.2,ENST00000572272.1,ENST00000262467.5,ENST00000354411.3,ENST00000269280.4	chr17	5456705:5456876:5461658:5463363:5485178:5485382,	5461659	5463363	5463204	5463204	Frame_Shift_Del	T	-	p.N271fs
UCEC	TCGA-D1-A101-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P597fs
UCEC	TCGA-D1-A101-01	HEATR6	ENST00000587314.1	chr17	58121033:58121495:58123385:58123460:58124669:58124766,	58123386	58123460	58123403	58123403	Frame_Shift_Del	T	-	p.N986fs
UCEC	TCGA-D1-A101-01	HEATR6	ENST00000184956.6,ENST00000585976.1,ENST00000587003.1	chr17	58121033:58121495:58123385:58123590:58124669:58124766,	58123386	58123590	58123403	58123403	Frame_Shift_Del	T	-	p.N986fs
UCEC	TCGA-D1-A101-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072519	60072519	Frame_Shift_Del	T	-	p.K725fs
UCEC	TCGA-D1-A101-01	ABCA7	ENST00000525073.2	chr19	1057312:1057428:1057967:1058058:1058144:1058156,	1057968	1058058	1058002	1058003	Frame_Shift_Del	TT	-	p.F1657fs
UCEC	TCGA-D1-A101-01	ABCA7	ENST00000433129.1,ENST00000435683.2,ENST00000263094.6,ENST00000532194.2,ENST00000529442.2	chr19	1057312:1057428:1057913:1058058:1058144:1058156,	1057914	1058058	1058002	1058003	Frame_Shift_Del	TT	-	p.F1657fs
UCEC	TCGA-D1-A101-01	CIRBP	ENST00000588230.1,ENST00000587169.1,ENST00000589235.1,ENST00000587323.1,ENST00000586472.1,ENST00000585913.1,ENST00000590704.1,ENST00000593048.1,ENST00000589710.1,ENST00000444172.2,ENST00000591376.1,ENST00000588090.1,ENST00000586773.1,ENST00000593093.1,ENST00000591935.1,ENST00000590171.1,ENST00000592412.1,ENST00000585630.1,ENST00000593128.1,ENST00000588030.1,ENST00000589660.1,ENST00000586548.1,ENST00000589686.1,ENST00000320936.5,ENST00000586636.1,ENST00000585914.1,ENST00000587896.1	chr19	1271327:1271364:1271549:1271631:1271979:1272027,1271449:1271466:1271549:1271631:1271979:1272027,	1271550	1271631	1271570	1271570	Frame_Shift_Del	G	-	p.G124fs
UCEC	TCGA-D1-A101-01	MYO9B	ENST00000594824.1,ENST00000397274.2,ENST00000595641.1,ENST00000598101.1,ENST00000595618.1	chr19	17286471:17286550:17291735:17291849:17294637:17294677,	17291736	17291849	17291793	17291793	Frame_Shift_Del	C	-	p.D759fs
UCEC	TCGA-D1-A101-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906183	19906183	Frame_Shift_Del	T	-	p.K171fs
UCEC	TCGA-D1-A101-01	RAE1	ENST00000527947.1,ENST00000395840.2,ENST00000395841.2,ENST00000371242.2	chr20	55943760:55943868:55948530:55948637:55948718:55948794,	55948531	55948637	55948626	55948626	Frame_Shift_Del	C	-	p.N246fs
UCEC	TCGA-D1-A101-01	TMPRSS6	ENST00000406856.1,ENST00000381792.2,ENST00000346753.3,ENST00000406725.1,ENST00000442782.2	chr22	37480334:37480444:37480766:37480879:37482322:37482459,	37480767	37480879	37480793	37480793	Frame_Shift_Del	G	-	p.Q354fs
UCEC	TCGA-D1-A101-01	MAGED1	ENST00000375722.1,ENST00000375772.3,ENST00000326587.7,ENST00000485420.1,ENST00000473931.1,ENST00000375695.2	chrX	51641706:51641739:51643277:51643392:51644648:51645034,	51643278	51643392	51643311	51643311	Frame_Shift_Del	C	-	p.N682fs
UCEC	TCGA-D1-A102-01	MKRN1	ENST00000255977.2,ENST00000474576.1,ENST00000496169.1,ENST00000475010.1,ENST00000471104.1,ENST00000494939.1,ENST00000467513.1,ENST00000443720.2	chr7	140158977:140159033:140159506:140159736:140171682:140171811,	140159507	140159736	140159587	140159587	Frame_Shift_Del	T	-	p.N155fs
UCEC	TCGA-D1-A102-01	MRPS33	ENST00000324787.5	chr7	140705968:140706335:140710218:140710460:140714151:140714229,140705968:140706335:140710218:140710460:140714710:140714749,	140710219	140710460	140710370	140710370	Frame_Shift_Del	C	-	p.V22fs
UCEC	TCGA-D1-A102-01	MRPS33	ENST00000467334.1	chr7	140705968:140706335:140710218:140710417:140714710:140714749,	140710219	140710417	140710370	140710370	Frame_Shift_Del	C	-	p.V22fs
UCEC	TCGA-D1-A102-01	MUC6	ENST00000421673.2	chr11	1013898:1014001:1015761:1018770:1019274:1019496,	1015762	1018770	1016483	1016483	Frame_Shift_Del	A	-	p.P2106fs
UCEC	TCGA-D1-A102-01	CWF19L2	ENST00000532251.1,ENST00000433523.1,ENST00000282251.5,ENST00000431778.1	chr11	107288919:107289013:107299524:107300177:107304359:107304475,	107299525	107300177	107300005	107300005	Frame_Shift_Del	T	-	p.Y318fs
UCEC	TCGA-D1-A102-01	LIN7A	ENST00000552864.1,ENST00000261203.3	chr12	81191353:81191505:81205243:81205462:81239508:81239718,	81205244	81205462	81205440	81205440	Frame_Shift_Del	T	-	p.E169fs
UCEC	TCGA-D1-A102-01	LIN7A	ENST00000552864.1,ENST00000261203.3	chr12	81191353:81191505:81205243:81205462:81239508:81239718,	81205244	81205462	81205444	81205444	Frame_Shift_Del	G	-	p.H168fs
UCEC	TCGA-D1-A102-01	LIN7A	ENST00000552864.1,ENST00000261203.3	chr12	81191353:81191505:81205243:81205462:81239508:81239718,	81205244	81205462	81205447	81205448	Frame_Shift_Ins	-	A	p.E166fs
UCEC	TCGA-D1-A102-01	PCCA	ENST00000376285.1,ENST00000376279.3,ENST00000376286.4	chr13	100909848:100909927:100914982:100915085:100920942:100921037,	100914983	100915085	100915008	100915008	Frame_Shift_Del	G	-	p.E248fs
UCEC	TCGA-D1-A102-01	RBFOX1	ENST00000547372.1,ENST00000551752.1,ENST00000422070.4,ENST00000550418.1,ENST00000355637.4,ENST00000436368.2,ENST00000570626.1,ENST00000547338.1,ENST00000311745.5,ENST00000553186.1,ENST00000340209.4	chr16	7568148:7568391:7629778:7629922:7637248:7637302,	7629779	7629922	7629787	7629787	Frame_Shift_Del	T	-	p.D93fs
UCEC	TCGA-D1-A102-01	RBFOX1	ENST00000547605.1	chr16	7568148:7568391:7629781:7629922:7637248:7637302,	7629782	7629922	7629787	7629787	Frame_Shift_Del	T	-	p.D93fs
UCEC	TCGA-D1-A102-01	RBFOX1	ENST00000547372.1,ENST00000551752.1,ENST00000422070.4,ENST00000550418.1,ENST00000355637.4,ENST00000436368.2,ENST00000570626.1,ENST00000547338.1,ENST00000311745.5,ENST00000553186.1,ENST00000340209.4	chr16	7568148:7568391:7629778:7629922:7637248:7637302,	7629779	7629922	7629790	7629790	Frame_Shift_Del	C	-	p.D94fs
UCEC	TCGA-D1-A102-01	RBFOX1	ENST00000547605.1	chr16	7568148:7568391:7629781:7629922:7637248:7637302,	7629782	7629922	7629790	7629790	Frame_Shift_Del	C	-	p.D94fs
UCEC	TCGA-D1-A102-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122800956:122801129:122802009:122802165:122805519:122805612,	122802010	122802165	122802043	122802044	Frame_Shift_Del	TT	-	p.K328fs
UCEC	TCGA-D1-A102-01	THOC2	ENST00000355725.4,ENST00000245838.8,ENST00000491737.1	chrX	122800956:122801129:122802009:122802165:122805519:122805612,	122802010	122802165	122802053	122802054	Frame_Shift_Ins	-	C	p.E325fs
UCEC	TCGA-D1-A15W-01	CFHR1	ENST00000320493.5	chr1	196795958:196796135:196797199:196797376:196799629:196799812,	196797200	196797376	196797277	196797278	Frame_Shift_Del	GA	-	p.E170fs
UCEC	TCGA-D1-A15W-01	DEGS1	ENST00000323699.4,ENST00000391877.3	chr1	224370967:224371120:224377278:224378021:224380033:224380055,	224377279	224378021	224377954	224377954	Frame_Shift_Del	C	-	p.T253fs
UCEC	TCGA-D1-A15W-01	COX20	ENST00000366528.3	chr1	244998960:244999058:245005245:245005360:245005500:245005560,244999786:244999822:245005245:245005360:245005496:245005560,	245005246	245005360	245005335	245005336	Frame_Shift_Ins	-	G	p.A44fs
UCEC	TCGA-D1-A15Z-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711964	89711965	Frame_Shift_Ins	-	T	p.L194fs
UCEC	TCGA-D1-A15Z-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717753	89717754	Frame_Shift_Del	AA	-	p.K260fs
UCEC	TCGA-D1-A163-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101268	27101268	Frame_Shift_Del	C	-	p.A1517fs
UCEC	TCGA-D1-A163-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101278	27101278	Frame_Shift_Del	C	-	p.G1520fs
UCEC	TCGA-D1-A163-01	ZMYM6	ENST00000373340.2,ENST00000415531.1,ENST00000357182.4	chr1	35480588:35480763:35484953:35485203:35485983:35486068,	35484954	35485203	35485090	35485090	Frame_Shift_Del	T	-	p.M98fs
UCEC	TCGA-D1-A163-01	CSF3R	ENST00000373104.1,ENST00000464365.2,ENST00000480825.2,ENST00000338937.5,ENST00000373103.1,ENST00000440588.2,ENST00000331941.5,ENST00000373106.1,ENST00000487540.2,ENST00000418048.2,ENST00000361632.4	chr1	36934756:36934858:36935252:36935441:36937033:36937075,	36935253	36935441	36935323	36935323	Frame_Shift_Del	G	-	p.P468fs
UCEC	TCGA-D1-A163-01	UBQLN4	ENST00000368309.3	chr1	156020081:156020344:156020900:156021118:156021496:156021584,	156020901	156021118	156020952	156020953	Frame_Shift_Ins	-	C	p.G142fs
UCEC	TCGA-D1-A163-01	TAGLN2	ENST00000320307.4,ENST00000368097.4,ENST00000368096.1,ENST00000397334.2,ENST00000478033.1	chr1	159889063:159889166:159889450:159889625:159890119:159890226,	159889451	159889625	159889464	159889465	Frame_Shift_Del	CA	-	p.V114fs
UCEC	TCGA-D1-A163-01	ARHGAP30	ENST00000461003.1,ENST00000368015.1,ENST00000490279.1,ENST00000368016.3,ENST00000368013.3	chr1	161019384:161019479:161021103:161021505:161022075:161022153,	161021104	161021505	161021106	161021106	Frame_Shift_Del	G	-	p.P473fs
UCEC	TCGA-D1-A163-01	ASAP2	ENST00000281419.3,ENST00000315273.4,ENST00000484590.1	chr2	9540151:9540201:9540870:9540959:9541402:9541525,	9540871	9540959	9540927	9540927	Frame_Shift_Del	C	-	p.P931fs
UCEC	TCGA-D1-A163-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102450870:102450925:102452361:102452440:102456280:102456394,	102452362	102452440	102452432	102452432	Frame_Shift_Del	A	-	p.S255fs
UCEC	TCGA-D1-A163-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380063	109380064	Frame_Shift_Del	CA	-	p.A1023fs
UCEC	TCGA-D1-A163-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380715	109380716	Frame_Shift_Ins	-	A	p.L1240fs
UCEC	TCGA-D1-A163-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152276738:152276893:152279463:152279556:152285297:152285436,	152279464	152279556	152279532	152279535	Frame_Shift_Del	TTTG	-	p.P254fs
UCEC	TCGA-D1-A163-01	RAD18	ENST00000415439.1	chr3	8944063:8944204:8953995:8954056:8977554:8977739,	8953996	8954056	8954044	8954045	Frame_Shift_Ins	-	A	p.F326fs
UCEC	TCGA-D1-A163-01	DLEC1	ENST00000440294.2,ENST00000452631.2,ENST00000308059.6,ENST00000346219.3	chr3	38103659:38103859:38104071:38104292:38105331:38105410,	38104072	38104292	38104190	38104191	Frame_Shift_Ins	-	T	p.R331fs
UCEC	TCGA-D1-A163-01	AMOTL2	ENST00000506326.1,ENST00000249883.5	chr3	134076392:134076605:134077381:134077561:134078124:134078345,	134077382	134077561	134077462	134077462	Frame_Shift_Del	G	-	p.P792fs
UCEC	TCGA-D1-A163-01	AMOTL2	ENST00000422605.2,ENST00000514516.1,ENST00000513145.1	chr3	134076392:134076605:134077381:134077558:134078124:134078345,	134077382	134077558	134077462	134077462	Frame_Shift_Del	G	-	p.P792fs
UCEC	TCGA-D1-A163-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36984974	36984974	Frame_Shift_Del	A	-	p.I564fs
UCEC	TCGA-D1-A163-01	PLA2G7	ENST00000274793.7,ENST00000537365.1	chr6	46675727:46675898:46677063:46677155:46678281:46678395,	46677064	46677155	46677134	46677134	Frame_Shift_Del	T	-	p.I267fs
UCEC	TCGA-D1-A163-01	SMAP1	ENST00000370452.3,ENST00000316999.5,ENST00000370455.3	chr6	71508359:71508440:71546643:71546731:71562242:71562367,	71546644	71546731	71546674	71546674	Frame_Shift_Del	A	-	p.K203fs
UCEC	TCGA-D1-A163-01	ORC3	ENST00000257789.4	chr6	88299862:88299910:88304070:88304125:88311501:88311599,	88304071	88304125	88304098	88304098	Frame_Shift_Del	A	-	p.K18fs
UCEC	TCGA-D1-A163-01	LATS1	ENST00000441107.1,ENST00000542747.1,ENST00000543571.1,ENST00000253339.5	chr6	150001010:150001593:150004214:150005728:150016209:150016357,	150004215	150005728	150004239	150004239	Frame_Shift_Del	T	-	p.K662fs
UCEC	TCGA-D1-A163-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1,ENST00000417852.1	chr7	716865:716957:720192:720363:750965:751164,	720193	720363	720281	720281	Frame_Shift_Del	G	-	p.P87fs
UCEC	TCGA-D1-A163-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1,ENST00000417852.1	chr7	716865:716957:720192:720363:750965:751164,	720193	720363	720344	720344	Frame_Shift_Del	A	-	p.L66fs
UCEC	TCGA-D1-A163-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173278	126173278	Frame_Shift_Del	G	-	p.H720fs
UCEC	TCGA-D1-A163-01	LMBR1	ENST00000461469.1,ENST00000540390.1,ENST00000444719.1,ENST00000434278.1,ENST00000354505.4,ENST00000353442.5,ENST00000415428.1	chr7	156556396:156556489:156589082:156589186:156619298:156619438,	156589083	156589186	156589159	156589160	Frame_Shift_Ins	-	A	p.S116fs
UCEC	TCGA-D1-A163-01	RECK	ENST00000377966.3	chr9	36109953:36110076:36112301:36112473:36116981:36117174,	36112302	36112473	36112460	36112461	Frame_Shift_Ins	-	A	p.Q683fs
UCEC	TCGA-D1-A163-01	SLC34A3	ENST00000538474.1,ENST00000361134.2	chr9	140127660:140127856:140128084:140128174:140128314:140128393,	140128085	140128174	140128120	140128121	Frame_Shift_Ins	-	A	p.G264fs
UCEC	TCGA-D1-A163-01	DDX50	ENST00000373585.3,ENST00000460470.1	chr10	70673182:70673332:70673814:70673960:70679587:70679737,	70673815	70673960	70673881	70673882	Frame_Shift_Ins	-	A	p.A337fs
UCEC	TCGA-D1-A163-01	USP35	ENST00000530546.1,ENST00000529308.1,ENST00000526425.1,ENST00000441408.2,ENST00000528910.1	chr11	77911178:77911280:77911695:77911854:77916887:77917081,	77911696	77911854	77911710	77911710	Frame_Shift_Del	C	-	p.I351fs
UCEC	TCGA-D1-A163-01	LTBR	ENST00000541102.1,ENST00000535739.1,ENST00000544454.1,ENST00000228918.4,ENST00000536876.1,ENST00000539925.1	chr12	6494392:6494545:6495231:6495328:6495512:6495537,	6495232	6495328	6495298	6495298	Frame_Shift_Del	C	-	p.S180fs
UCEC	TCGA-D1-A163-01	CBX5	ENST00000439541.2,ENST00000550411.1,ENST00000209875.4	chr12	54639898:54639999:54645824:54646011:54651297:54651476,	54645825	54646011	54645831	54645832	Frame_Shift_Ins	-	T	p.K106fs
UCEC	TCGA-D1-A163-01	TAOK3	ENST00000537305.1,ENST00000419821.2,ENST00000392533.3	chr12	118636855:118637062:118639100:118639268:118650718:118650800,	118639101	118639268	118639156	118639157	Frame_Shift_Ins	-	T	p.I311fs
UCEC	TCGA-D1-A163-01	INF2	ENST00000392634.4,ENST00000330634.7	chr14	105173246:105173388:105173589:105174339:105174772:105174924,	105173590	105174339	105174184	105174185	Frame_Shift_Ins	-	C	p.S527fs
UCEC	TCGA-D1-A163-01	TJP1	ENST00000545208.2,ENST00000400011.2,ENST00000356107.6,ENST00000346128.6	chr15	30024834:30025019:30025297:30025517:30026477:30026586,	30025298	30025517	30025340	30025340	Frame_Shift_Del	T	-	p.N565fs
UCEC	TCGA-D1-A163-01	TXNDC11	ENST00000283033.5,ENST00000356957.3	chr16	11782158:11782301:11785145:11785938:11791980:11792181,	11785146	11785938	11785647	11785648	Frame_Shift_Ins	-	A	p.F493fs
UCEC	TCGA-D1-A163-01	RRN3	ENST00000540462.1,ENST00000327307.7,ENST00000429751.2,ENST00000198767.6,ENST00000563559.1	chr16	15155645:15155762:15157052:15157140:15159075:15159228,	15157053	15157140	15157054	15157054	Frame_Shift_Del	T	-	p.K598_splice
UCEC	TCGA-D1-A163-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645338	67645339	Frame_Shift_Ins	-	A	p.A201fs
UCEC	TCGA-D1-A163-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P597fs
UCEC	TCGA-D1-A163-01	NCOR1	ENST00000395851.1,ENST00000395848.1,ENST00000268712.3	chr17	16024365:16024583:16029395:16029520:16040624:16040726,	16029396	16029520	16029456	16029457	Frame_Shift_Ins	-	T	p.T525fs
UCEC	TCGA-D1-A163-01	COASY	ENST00000421097.2	chr17	40714168:40714237:40714629:40715340:40715978:40716193,	40714630	40715340	40715173	40715173	Frame_Shift_Del	C	-	p.S207fs
UCEC	TCGA-D1-A163-01	COASY	ENST00000420359.1	chr17	40714168:40714237:40714373:40715340:40715978:40716193,	40714374	40715340	40715173	40715173	Frame_Shift_Del	C	-	p.S207fs
UCEC	TCGA-D1-A163-01	COASY	ENST00000591779.1,ENST00000449624.1	chr17	40714168:40714237:40714950:40715340:40715978:40716193,	40714951	40715340	40715173	40715173	Frame_Shift_Del	C	-	p.S207fs
UCEC	TCGA-D1-A163-01	WNK4	ENST00000591448.1,ENST00000246914.5	chr17	40939295:40939560:40939795:40939917:40940147:40940206,	40939796	40939917	40939870	40939870	Frame_Shift_Del	G	-	p.G606fs
UCEC	TCGA-D1-A163-01	HDAC5	ENST00000586802.1,ENST00000393622.2,ENST00000336057.5,ENST00000225983.6	chr17	42157474:42157593:42157768:42157866:42158130:42158250,	42157769	42157866	42157801	42157801	Frame_Shift_Del	G	-	p.P932fs
UCEC	TCGA-D1-A163-01	FECH	ENST00000585494.1,ENST00000262093.5,ENST00000382873.3,ENST00000591977.1	chr18	55218546:55218606:55221491:55221656:55222076:55222184,	55221492	55221656	55221591	55221591	Frame_Shift_Del	C	-	p.G326fs
UCEC	TCGA-D1-A163-01	TDRD12	ENST00000421545.2	chr19	33210978:33211002:33222630:33222789:33229761:33229898,	33222631	33222789	33222679	33222679	Frame_Shift_Del	T	-	p.F25fs
UCEC	TCGA-D1-A163-01	ATF5	ENST00000423777.2,ENST00000595125.1	chr19	50432499:50432657:50433988:50434285:50435678:50435865,	50433989	50434285	50434211	50434211	Frame_Shift_Del	C	-	p.A35fs
UCEC	TCGA-D1-A163-01	SIGLEC10	ENST00000339313.5,ENST00000356298.5,ENST00000357375.4,ENST00000439889.2	chr19	51917675:51917769:51918077:51918362:51918434:51918613,	51918078	51918362	51918205	51918205	Frame_Shift_Del	G	-	p.P496fs
UCEC	TCGA-D1-A163-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073336	33073336	Frame_Shift_Del	G	-	p.P250fs
UCEC	TCGA-D1-A163-01	RUNX1	ENST00000482318.1	chr21	36231770:36231875:36252853:36253010:36421138:36421255,	36252854	36253010	36252917	36252918	Frame_Shift_Ins	-	GGTAGCA	p.T121fs
UCEC	TCGA-D1-A163-01	MED15	ENST00000489651.1,ENST00000263205.7	chr22	20922852:20922918:20936897:20937034:20937126:20937254,20929399:20929519:20936897:20937034:20937126:20937254,	20936898	20937034	20936976	20936976	Frame_Shift_Del	C	-	p.P451fs
UCEC	TCGA-D1-A163-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564716	42564716	Frame_Shift_Del	G	-	p.P1942fs
UCEC	TCGA-D1-A165-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717757	89717758	Frame_Shift_Del	AG	-	p.Q261fs
UCEC	TCGA-D1-A168-01	COX20	ENST00000366528.3	chr1	244998960:244999058:245005245:245005360:245005500:245005560,244999786:244999822:245005245:245005360:245005496:245005560,	245005246	245005360	245005335	245005336	Frame_Shift_Ins	-	G	p.A44fs
UCEC	TCGA-D1-A168-01	COX20	ENST00000366528.3	chr1	244998960:244999058:245005245:245005360:245005500:245005560,244999786:244999822:245005245:245005360:245005496:245005560,	245005246	245005360	245005344	245005344	Frame_Shift_Del	A	-	p.G47fs
UCEC	TCGA-D1-A168-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195509640	195509641	Frame_Shift_Ins	-	G	p.V2937fs
UCEC	TCGA-D1-A168-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195509641	195509642	Frame_Shift_Ins	-	TG	p.V2937fs
UCEC	TCGA-D1-A168-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195513268	195513269	Frame_Shift_Ins	-	T	p.P1728fs
UCEC	TCGA-D1-A168-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195513271	195513271	Frame_Shift_Del	G	-	p.T1727fs
UCEC	TCGA-D1-A168-01	HNRNPAB	ENST00000504898.1,ENST00000358344.3	chr5	177634094:177634226:177636330:177636448:177637132:177637273,	177636331	177636448	177636363	177636364	Frame_Shift_Ins	-	T	p.V234fs
UCEC	TCGA-D1-A168-01	HNRNPAB	ENST00000506339.1	chr5	177634094:177634226:177636330:177636433:177637132:177637273,	177636331	177636433	177636363	177636364	Frame_Shift_Ins	-	T	p.V234fs
UCEC	TCGA-D1-A168-01	CNOT1	ENST00000567188.1,ENST00000441024.2,ENST00000565605.1,ENST00000569240.1	chr16	58622724:58622810:58633139:58633415:58663631:58663719,	58633140	58633415	58633164	58633165	Frame_Shift_Ins	-	C	p.R26fs
UCEC	TCGA-D1-A16B-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056302	27056302	Frame_Shift_Del	C	-	p.T433fs
UCEC	TCGA-D1-A16B-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581488	17581489	Frame_Shift_Ins	-	T	p.I37fs
UCEC	TCGA-D1-A16E-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685312	89685313	Frame_Shift_Del	TC	-	p.N69fs
UCEC	TCGA-D1-A16E-01	CDON	ENST00000263577.7,ENST00000392693.3,ENST00000531738.1	chr11	125867101:125867305:125871613:125871745:125873796:125873971,	125871614	125871745	125871739	125871740	Frame_Shift_Ins	-	T	p.T678fs
UCEC	TCGA-D1-A16G-01	NAA15	ENST00000296543.5	chr4	140299909:140300008:140305985:140306132:140307286:140307384,	140305986	140306132	140306014	140306014	Frame_Shift_Del	T	-	p.D728fs
UCEC	TCGA-D1-A16G-01	NAA15	ENST00000398947.1	chr4	140299909:140300008:140305988:140306132:140307286:140307384,	140305989	140306132	140306014	140306014	Frame_Shift_Del	T	-	p.D728fs
UCEC	TCGA-D1-A16I-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831055	72831079	Frame_Shift_Del	TGGGACCTGAACCTGAGCCTTCAGA	-	p.D1834fs
UCEC	TCGA-D1-A16N-01	DYNC1I2	ENST00000412370.1,ENST00000410079.3,ENST00000438879.1,ENST00000456808.1,ENST00000358002.6,ENST00000411953.1,ENST00000423910.1	chr2	172546656:172546773:172549286:172549404:172571837:172571860,172546656:172546773:172549286:172549404:172563796:172563887,172546656:172546773:172549286:172549404:172563742:172563887,	172549287	172549404	172549339	172549339	Frame_Shift_Del	A	-	p.E54fs
UCEC	TCGA-D1-A16N-01	NFE2L2	ENST00000423513.1,ENST00000446151.2,ENST00000397063.4	chr2	178097977:178098067:178098732:178098999:178129259:178129387,178097977:178098067:178098732:178098999:178128130:178128182,	178098733	178098999	178098885	178098886	Frame_Shift_Ins	-	T	p.K53fs
UCEC	TCGA-D1-A16N-01	AFP	ENST00000226359.2,ENST00000395792.2	chr4	74310709:74310839:74313178:74313393:74315051:74315184,	74313179	74313393	74313372	74313372	Frame_Shift_Del	A	-	p.E346fs
UCEC	TCGA-D1-A16N-01	CYB5R4	ENST00000369681.5	chr6	84632156:84632189:84634188:84634311:84644313:84644454,	84634189	84634311	84634231	84634231	Frame_Shift_Del	A	-	p.Q245fs
UCEC	TCGA-D1-A16N-01	KIAA2026	ENST00000540714.1,ENST00000399933.3	chr9	5929043:5929159:5954015:5954095:5968018:5968081,5944870:5944960:5954015:5954095:5968018:5968081,	5954016	5954095	5954087	5954088	Frame_Shift_Ins	-	T	p.K740fs
UCEC	TCGA-D1-A16N-01	KTN1	ENST00000438792.2,ENST00000413890.2,ENST00000395309.3,ENST00000554507.1,ENST00000416613.1,ENST00000553360.1,ENST00000395314.3,ENST00000459737.1,ENST00000554570.1,ENST00000554306.1,ENST00000395308.1,ENST00000395311.1	chr14	56125263:56125332:56126383:56126421:56128239:56128304,	56126384	56126421	56126396	56126396	Frame_Shift_Del	C	-	p.P992fs
UCEC	TCGA-D1-A16N-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602375.1,ENST00000582377.1,ENST00000602811.1,ENST00000582183.1,ENST00000579089.1,ENST00000602305.1,ENST00000581941.1,ENST00000602537.1	chr17	11998918:11999011:12011106:12011226:12013691:12013743,	12011107	12011226	12011162	12011184	Frame_Shift_Del	AATATGTATATAGTGTATTAGAT	-	p.K190fs
UCEC	TCGA-D1-A16O-01	KANSL1	ENST00000577114.1,ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1	chr17	44159806:44159908:44171925:44172067:44248220:44248306,	44171926	44172067	44172014	44172017	Frame_Shift_Del	CGGC	-	p.S447fs
UCEC	TCGA-D1-A16O-01	KANSL1	ENST00000577114.1,ENST00000393476.3,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000575318.1	chr17	44159806:44159908:44171925:44172067:44248220:44248306,	44171926	44172067	44172019	44172026	Frame_Shift_Del	GACAATAG	-	p.A444fs
UCEC	TCGA-D1-A16R-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711885	89711886	Frame_Shift_Ins	-	G	p.I168fs
UCEC	TCGA-D1-A16R-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711887	89711890	Frame_Shift_Del	CCCA	-	p.P169fs
UCEC	TCGA-D1-A16S-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000396085.1,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20070273:20070741:20072834:20072879:20075625:20075786,20071381:20071447:20072834:20072879:20075625:20075786,	20072835	20072879	20072852	20072852	Frame_Shift_Del	G	-	p.R1508fs
UCEC	TCGA-D1-A16S-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.R284fs
UCEC	TCGA-D1-A16S-01	MLH3	ENST00000238662.7,ENST00000380968.2	chr14	75509081:75509180:75513078:75516421:75518082:75518235,	75513079	75516421	75515424	75515424	Frame_Shift_Del	C	-	p.C312fs
UCEC	TCGA-D1-A174-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-D1-A174-01	PRDM2	ENST00000413440.1,ENST00000343137.4,ENST00000311066.5	chr1	14099572:14099683:14104912:14109326:14142921:14143065,14099572:14099683:14104912:14109326:14113009:14113562,	14104913	14109326	14108749	14108749	Frame_Shift_Del	A	-	p.K1487fs
UCEC	TCGA-D1-A174-01	GPBP1L1	ENST00000290795.3,ENST00000355105.3	chr1	46120214:46120501:46120861:46120991:46124699:46124814,	46120862	46120991	46120889	46120890	Frame_Shift_Ins	-	A	p.F54fs
UCEC	TCGA-D1-A174-01	ITGA10	ENST00000468261.1,ENST00000369304.3	chr1	145527612:145527724:145527927:145528037:145528253:145528345,	145527928	145528037	145527998	145527998	Frame_Shift_Del	G	-	p.G79fs
UCEC	TCGA-D1-A174-01	USF1	ENST00000496363.1,ENST00000534633.1,ENST00000368020.1,ENST00000368021.3,ENST00000435396.1,ENST00000473969.2	chr1	161011179:161011201:161011440:161011636:161011905:161012007,	161011441	161011636	161011524	161011524	Frame_Shift_Del	C	-	p.G130fs
UCEC	TCGA-D1-A174-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693894	47693895	Frame_Shift_Ins	-	A	p.N536fs
UCEC	TCGA-D1-A174-01	COBLL1	ENST00000342193.4,ENST00000392717.2	chr2	165548730:165548907:165550778:165552343:165555914:165556009,	165550779	165552343	165551296	165551296	Frame_Shift_Del	A	-	p.L907fs
UCEC	TCGA-D1-A174-01	COBLL1	ENST00000194871.6,ENST00000375458.2,ENST00000409184.3,ENST00000493868.1	chr2	165548730:165548907:165550778:165552346:165555914:165556009,	165550779	165552346	165551296	165551296	Frame_Shift_Del	A	-	p.L907fs
UCEC	TCGA-D1-A174-01	FN1	ENST00000357009.2	chr2	216232585:216232750:216236631:216236738:216238044:216238133,	216236632	216236738	216236721	216236722	Frame_Shift_Del	GA	-	p.S2208fs
UCEC	TCGA-D1-A174-01	TOPBP1	ENST00000260810.5	chr3	133331232:133331396:133335657:133335769:133336003:133336170,	133335658	133335769	133335731	133335731	Frame_Shift_Del	T	-	p.K1266fs
UCEC	TCGA-D1-A174-01	ETV5	ENST00000537818.1,ENST00000306376.5,ENST00000434744.1,ENST00000480706.1	chr3	185766603:185766649:185769818:185769920:185774863:185775033,	185769819	185769920	185769852	185769853	Frame_Shift_Del	GA	-	p.L468fs
UCEC	TCGA-D1-A174-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195512020	195512020	Frame_Shift_Del	G	-	p.P2144fs
UCEC	TCGA-D1-A174-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864163	129864163	Frame_Shift_Del	T	-	p.K540fs
UCEC	TCGA-D1-A174-01	WWC2	ENST00000403733.3,ENST00000378925.3,ENST00000448232.2,ENST00000438543.1,ENST00000513834.1	chr4	184161335:184161415:184166568:184166698:184169866:184170013,	184166569	184166698	184166576	184166576	Frame_Shift_Del	A	-	p.K204fs
UCEC	TCGA-D1-A174-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247829	55247830	Frame_Shift_Ins	-	A	p.L542fs
UCEC	TCGA-D1-A174-01	ARRDC3	ENST00000508948.1,ENST00000265138.3,ENST00000503192.1	chr5	90671343:90671430:90672437:90672585:90674510:90674592,	90672438	90672585	90672440	90672440	Frame_Shift_Del	G	-	p.L170fs
UCEC	TCGA-D1-A174-01	UIMC1	ENST00000506128.1	chr5	176385093:176385155:176396053:176396292:176396601:176396707,	176396054	176396292	176396247	176396248	Frame_Shift_Del	AT	-	p.I170fs
UCEC	TCGA-D1-A174-01	UIMC1	ENST00000377227.4,ENST00000377219.2,ENST00000511320.1	chr5	176385093:176385155:176395555:176396292:176396601:176396707,	176395556	176396292	176396247	176396248	Frame_Shift_Del	AT	-	p.I170fs
UCEC	TCGA-D1-A174-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675269	176675269	Frame_Shift_Del	A	-	p.K1529fs
UCEC	TCGA-D1-A174-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176707565:176707835:176709465:176709582:176710787:176710929,	176709466	176709582	176709489	176709489	Frame_Shift_Del	G	-	p.V1972fs
UCEC	TCGA-D1-A174-01	UHRF1BP1	ENST00000192788.5,ENST00000452449.2	chr6	34803070:34803241:34803932:34804125:34823393:34823480,	34803933	34804125	34803945	34803946	Frame_Shift_Ins	-	C	p.A285fs
UCEC	TCGA-D1-A174-01	PNISR	ENST00000369239.5,ENST00000478777.1,ENST00000438806.1	chr6	99857048:99857220:99858616:99858840:99860426:99860615,	99858617	99858840	99858711	99858711	Frame_Shift_Del	G	-	p.P136fs
UCEC	TCGA-D1-A174-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923752	158923753	Frame_Shift_Ins	-	G	p.P1019fs
UCEC	TCGA-D1-A174-01	PRKAR1B	ENST00000544935.1,ENST00000430040.1,ENST00000360274.4,ENST00000537384.1,ENST00000406797.1,ENST00000403562.1,ENST00000417852.1	chr7	716865:716957:720192:720363:750965:751164,	720193	720363	720281	720281	Frame_Shift_Del	G	-	p.P87fs
UCEC	TCGA-D1-A174-01	STK31	ENST00000355870.3,ENST00000428484.1,ENST00000405627.3,ENST00000354639.3,ENST00000433467.2,ENST00000476399.1	chr7	23768709:23768868:23775156:23775515:23776522:23776697,	23775157	23775515	23775341	23775341	Frame_Shift_Del	A	-	p.E223fs
UCEC	TCGA-D1-A174-01	SMURF1	ENST00000361368.2,ENST00000361125.1	chr7	98636010:98636148:98638000:98638179:98639740:98639855,	98638001	98638179	98638103	98638103	Frame_Shift_Del	C	-	p.G509fs
UCEC	TCGA-D1-A174-01	FBXO24	ENST00000465843.1,ENST00000474649.1,ENST00000241071.6,ENST00000360609.2	chr7	100184248:100184287:100187599:100187698:100187796:100187938,	100187600	100187698	100187686	100187686	Frame_Shift_Del	C	-	p.F80fs
UCEC	TCGA-D1-A174-01	GRM8	ENST00000341617.3,ENST00000358373.3,ENST00000472701.1,ENST00000444921.2,ENST00000339582.2	chr7	126086179:126086426:126173005:126173941:126249415:126249552,	126173006	126173941	126173278	126173278	Frame_Shift_Del	G	-	p.H720fs
UCEC	TCGA-D1-A174-01	METTL2B	ENST00000262432.8,ENST00000481392.1,ENST00000482555.1,ENST00000480046.1	chr7	128138089:128138196:128140956:128141022:128141815:128141886,	128140957	128141022	128140980	128140981	Frame_Shift_Del	TA	-	p.Y314fs
UCEC	TCGA-D1-A174-01	SULF1	ENST00000260128.4,ENST00000531064.1,ENST00000419716.3,ENST00000402687.4,ENST00000458141.2,ENST00000525999.1	chr8	70476330:70476382:70488204:70488444:70498591:70498695,	70488205	70488444	70488249	70488249	Frame_Shift_Del	G	-	p.G73fs
UCEC	TCGA-D1-A174-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686610	95686611	Frame_Shift_Ins	-	A	p.H509fs
UCEC	TCGA-D1-A174-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686610	95686611	Frame_Shift_Ins	-	A	p.H509fs
UCEC	TCGA-D1-A174-01	PPP6C	ENST00000373547.4,ENST00000456642.1,ENST00000451402.1	chr9	127916232:127916264:127920519:127920661:127933363:127933459,127916232:127916264:127920519:127920661:127923119:127923185,	127920520	127920661	127920570	127920570	Frame_Shift_Del	A	-	p.L147fs
UCEC	TCGA-D1-A174-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.G1862fs
UCEC	TCGA-D1-A174-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712011	89712011	Frame_Shift_Del	C	-	p.T210fs
UCEC	TCGA-D1-A174-01	SCAF11	ENST00000549162.1,ENST00000369367.3,ENST00000419565.2	chr12	46318729:46318857:46319924:46322642:46325288:46325395,	46319925	46322642	46320926	46320926	Frame_Shift_Del	T	-	p.K853fs
UCEC	TCGA-D1-A174-01	NCOR2	ENST00000356219.3	chr12	124846671:124846843:124848224:124848345:124856567:124857156,124846671:124846840:124848224:124848345:124856567:124857156,	124848225	124848345	124848228	124848228	Frame_Shift_Del	G	-	p.P975fs
UCEC	TCGA-D1-A174-01	ABCC4	ENST00000376887.4,ENST00000412704.1	chr13	95727685:95727805:95735393:95735544:95768175:95768255,	95735394	95735544	95735432	95735432	Frame_Shift_Del	A	-	p.L883fs
UCEC	TCGA-D1-A174-01	G2E3	ENST00000206595.6,ENST00000553504.1,ENST00000438909.2	chr14	31071204:31071337:31074710:31075018:31077093:31077125,	31074711	31075018	31074772	31074772	Frame_Shift_Del	A	-	p.K358fs
UCEC	TCGA-D1-A174-01	HEATR5A	ENST00000538864.2,ENST00000439727.1,ENST00000543095.2,ENST00000439348.1,ENST00000389961.3	chr14	31790704:31790886:31792770:31793010:31795368:31795548,	31792771	31793010	31792782	31792783	Frame_Shift_Ins	-	T	p.R1259fs
UCEC	TCGA-D1-A174-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761192	93761193	Frame_Shift_Ins	-	T	p.K58fs
UCEC	TCGA-D1-A174-01	SPRED1	ENST00000299084.4	chr15	38616963:38617010:38631937:38632096:38641622:38641724,	38631938	38632096	38631981	38631981	Frame_Shift_Del	T	-	p.L156fs
UCEC	TCGA-D1-A174-01	SCAPER	ENST00000324767.7,ENST00000564177.1,ENST00000565970.1,ENST00000564590.1,ENST00000563290.1,ENST00000303521.6	chr15	77096873:77096974:77134074:77134272:77150149:77150220,	77134075	77134272	77134200	77134200	Frame_Shift_Del	T	-	p.T90fs
UCEC	TCGA-D1-A174-01	AKAP13	ENST00000394518.2,ENST00000560579.1,ENST00000361243.2,ENST00000394510.2	chr15	86278222:86278381:86278790:86278861:86279320:86279365,	86278791	86278861	86278855	86278855	Frame_Shift_Del	A	-	p.L2502fs
UCEC	TCGA-D1-A174-01	FES	ENST00000496379.1,ENST00000394302.1,ENST00000414248.2,ENST00000450438.2,ENST00000444422.2	chr15	91433636:91433714:91434783:91434906:91435287:91435341,	91434784	91434906	91434851	91434851	Frame_Shift_Del	C	-	p.T533fs
UCEC	TCGA-D1-A174-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
UCEC	TCGA-D1-A174-01	CHD3	ENST00000470531.1,ENST00000358181.4,ENST00000330494.7,ENST00000380358.4	chr17	7808417:7808483:7808938:7809024:7809173:7809307,	7808939	7809024	7809010	7809010	Frame_Shift_Del	G	-	p.G1463fs
UCEC	TCGA-D1-A174-01	ATP9B	ENST00000590163.1,ENST00000426216.2,ENST00000307671.7,ENST00000490210.2	chr18	77063603:77063716:77066985:77067234:77089140:77089213,	77066986	77067234	77067125	77067125	Frame_Shift_Del	C	-	p.T555fs
UCEC	TCGA-D1-A174-01	NFIC	ENST00000589123.1,ENST00000589164.1,ENST00000443272.2	chr19	3452638:3452664:3453760:3453914:3456547:3456598,	3453761	3453914	3453853	3453853	Frame_Shift_Del	C	-	p.L454fs
UCEC	TCGA-D1-A174-01	RANBP3	ENST00000340578.6,ENST00000591333.1,ENST00000589886.1,ENST00000439268.2,ENST00000592133.1	chr19	5941809:5941846:5951403:5951607:5957928:5957943,	5951404	5951607	5951541	5951541	Frame_Shift_Del	G	-	p.H49fs
UCEC	TCGA-D1-A174-01	CD70	ENST00000423145.3	chr19	6583193:6583489:6586164:6586416:6590113:6590147,	6586165	6586416	6586380	6586380	Frame_Shift_Del	C	-	p.G78fs
UCEC	TCGA-D1-A174-01	LTBP4	ENST00000600509.1,ENST00000204005.9,ENST00000601032.1,ENST00000243562.9,ENST00000396819.3,ENST00000308370.7,ENST00000545697.1,ENST00000318809.7,ENST00000601209.1,ENST00000598677.1,ENST00000595118.1,ENST00000602240.1	chr19	41131761:41131914:41132879:41133260:41133609:41133625,	41132880	41133260	41132911	41132911	Frame_Shift_Del	C	-	p.R1405fs
UCEC	TCGA-D1-A174-01	EML2	ENST00000590819.1	chr19	46124811:46124895:46127976:46128076:46129962:46130010,46124464:46124590:46127976:46128076:46129962:46130010,	46127977	46128076	46127999	46127999	Frame_Shift_Del	C	-	p.G474fs
UCEC	TCGA-D1-A174-01	PLCG1	ENST00000373271.1,ENST00000244007.3,ENST00000373272.2	chr20	39791281:39791365:39791597:39791632:39791842:39791915,	39791598	39791632	39791606	39791606	Frame_Shift_Del	C	-	p.L230fs
UCEC	TCGA-D1-A174-01	EFHC2	ENST00000343571.3,ENST00000420999.1	chrX	44023167:44023273:44035537:44035630:44037612:44037810,	44035538	44035630	44035625	44035625	Frame_Shift_Del	T	-	p.N652fs
UCEC	TCGA-D1-A174-01	FAM122C	ENST00000370784.4	chrX	133983196:133983258:133986829:133986926:133988120:133988213,133979376:133979431:133986829:133986926:133988120:133988213,	133986830	133986926	133986854	133986855	Frame_Shift_Ins	-	A	p.Q124fs
UCEC	TCGA-D1-A176-01	EIF4G3	ENST00000374935.3,ENST00000602326.1,ENST00000400422.1,ENST00000536266.1,ENST00000264211.8,ENST00000374937.3	chr1	21205815:21206013:21212693:21212864:21220009:21220129,	21212694	21212864	21212767	21212767	Frame_Shift_Del	T	-	p.K728fs
UCEC	TCGA-D1-A176-01	PKN2	ENST00000370513.5,ENST00000370521.3	chr1	89150255:89150311:89206670:89206971:89225904:89226059,	89206671	89206971	89206802	89206803	Frame_Shift_Ins	-	A	p.L60fs
UCEC	TCGA-D1-A176-01	LMNA	ENST00000496738.1	chr1	156106903:156107023:156107444:156108548:156108870:156108893,	156107445	156108548	156108466	156108467	Frame_Shift_Ins	-	G	p.V629fs
UCEC	TCGA-D1-A176-01	LMNA	ENST00000508500.1,ENST00000347559.2	chr1	156107444:156107534:156108278:156108548:156108870:156108893,156106903:156107023:156108278:156108548:156108870:156108893,	156108279	156108548	156108466	156108467	Frame_Shift_Ins	-	G	p.V629fs
UCEC	TCGA-D1-A176-01	ISG20L2	ENST00000368219.1,ENST00000313146.6	chr1	156692394:156693254:156693939:156694140:156696697:156697178,	156693940	156694140	156694023	156694023	Frame_Shift_Del	G	-	p.L289fs
UCEC	TCGA-D1-A176-01	PRRC2C	ENST00000338920.4,ENST00000426496.2,ENST00000367742.3,ENST00000495585.1,ENST00000392078.3	chr1	171510968:171511368:171514617:171514826:171519224:171519379,	171514618	171514826	171514739	171514739	Frame_Shift_Del	A	-	p.K1627fs
UCEC	TCGA-D1-A176-01	ABL2	ENST00000392043.3,ENST00000511413.1,ENST00000502732.1,ENST00000507173.1,ENST00000504405.1,ENST00000408940.3,ENST00000367623.4,ENST00000512653.1,ENST00000344730.3	chr1	179081443:179081533:179084012:179084165:179086466:179086651,	179084013	179084165	179084039	179084039	Frame_Shift_Del	G	-	p.P512fs
UCEC	TCGA-D1-A176-01	PTPN7	ENST00000496197.1,ENST00000308986.5,ENST00000477554.1,ENST00000462815.1,ENST00000544762.1,ENST00000367279.4,ENST00000492977.1,ENST00000543735.1,ENST00000480836.1,ENST00000309017.3,ENST00000495688.1	chr1	202119438:202119552:202121669:202121827:202122852:202122938,	202121670	202121827	202121693	202121693	Frame_Shift_Del	G	-	p.P284fs
UCEC	TCGA-D1-A176-01	TUBA3D	ENST00000321253.6	chr2	132236880:132237029:132237641:132238322:132240124:132240507,	132237642	132238322	132237787	132237787	Frame_Shift_Del	C	-	p.A174fs
UCEC	TCGA-D1-A176-01	MAPKAPK3	ENST00000357955.2	chr3	50654561:50654672:50654944:50655215:50677796:50677936,50654600:50654657:50654944:50655215:50677796:50677936,	50654945	50655215	50655080	50655080	Frame_Shift_Del	G	-	p.P28fs
UCEC	TCGA-D1-A176-01	ARHGEF3	ENST00000495373.1,ENST00000498517.1,ENST00000473779.1,ENST00000413728.2,ENST00000338458.4,ENST00000465659.1,ENST00000468727.1,ENST00000481422.1,ENST00000496106.1,ENST00000296315.3,ENST00000497267.1	chr3	56787531:56787594:56789008:56789179:56807736:56807844,	56789009	56789179	56789105	56789105	Frame_Shift_Del	G	-	p.P125fs
UCEC	TCGA-D1-A176-01	ZBTB20	ENST00000462705.1,ENST00000357258.3,ENST00000474710.1,ENST00000471418.1,ENST00000393785.2,ENST00000481632.1,ENST00000464560.1	chr3	114058150:114058273:114069120:114070725:114099063:114099247,	114069121	114070725	114069198	114069198	Frame_Shift_Del	T	-	p.K576fs
UCEC	TCGA-D1-A176-01	ATP11B	ENST00000323116.5,ENST00000498086.1	chr3	182575665:182575816:182576949:182577147:182583243:182583486,	182576950	182577147	182577055	182577055	Frame_Shift_Del	T	-	p.F370fs
UCEC	TCGA-D1-A176-01	ARSJ	ENST00000541197.1	chr4	114823181:114823368:114823464:114824831:114899592:114900152,	114823465	114824831	114823494	114823494	Frame_Shift_Del	T	-	p.K579fs
UCEC	TCGA-D1-A176-01	KIF13A	ENST00000378843.2,ENST00000378816.5,ENST00000378814.5,ENST00000259711.6,ENST00000378826.2	chr6	17834191:17834302:17837108:17837321:17837702:17837814,	17837109	17837321	17837308	17837308	Frame_Shift_Del	C	-	p.G319fs
UCEC	TCGA-D1-A176-01	ANKRD6	ENST00000520839.1,ENST00000522441.1,ENST00000339746.4,ENST00000518253.1,ENST00000524056.1,ENST00000447838.2	chr6	90326277:90326376:90331640:90331745:90333128:90333179,90327676:90327750:90331640:90331745:90333128:90333179,	90331641	90331745	90331678	90331679	Frame_Shift_Del	AG	-	p.K277fs
UCEC	TCGA-D1-A176-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508009	158508009	Frame_Shift_Del	C	-	p.P1111fs
UCEC	TCGA-D1-A176-01	GALNT11	ENST00000430044.2	chr7	151722835:151722969:151791274:151791607:151797882:151798006,	151791275	151791607	151791353	151791353	Frame_Shift_Del	T	-	p.L14fs
UCEC	TCGA-D1-A176-01	BNIP3	ENST00000368636.4,ENST00000540159.1	chr10	133784141:133784291:133784367:133784474:133786537:133786622,	133784368	133784474	133784369	133784370	Frame_Shift_Ins	-	G	p.K130_splice
UCEC	TCGA-D1-A176-01	DNAJB13	ENST00000339764.1	chr11	73670538:73670700:73675922:73676080:73677182:73677296,	73675923	73676080	73675925	73675925	Frame_Shift_Del	T	-	p.F113fs
UCEC	TCGA-D1-A176-01	CD4	ENST00000536563.1,ENST00000011653.4	chr12	6923307:6923466:6923924:6924158:6925221:6925370,	6923925	6924158	6924043	6924043	Frame_Shift_Del	G	-	p.Q164fs
UCEC	TCGA-D1-A176-01	CLEC4A	ENST00000360500.3	chr12	8278156:8278273:8281859:8281958:8288180:8288332,8276507:8276556:8281859:8281958:8288180:8288332,	8281860	8281958	8281937	8281937	Frame_Shift_Del	A	-	p.K93fs
UCEC	TCGA-D1-A176-01	SPRYD3	ENST00000547837.1,ENST00000301463.4	chr12	53460097:53460270:53460356:53460476:53461431:53461489,	53460357	53460476	53460381	53460381	Frame_Shift_Del	G	-	p.R333fs
UCEC	TCGA-D1-A176-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641028	96641029	Frame_Shift_Ins	-	C	p.S173fs
UCEC	TCGA-D1-A176-01	YY1	ENST00000262238.4,ENST00000554804.1	chr14	100706095:100706260:100728640:100728803:100741034:100741095,	100728641	100728803	100728643	100728644	Frame_Shift_Ins	-	A	p.E228fs
UCEC	TCGA-D1-A176-01	MGA	ENST00000545763.1,ENST00000566586.1,ENST00000219905.7,ENST00000570161.1,ENST00000389936.4	chr15	42019377:42019604:42021361:42021547:42026719:42026792,	42021362	42021547	42021441	42021442	Frame_Shift_Ins	-	A	p.R1246fs
UCEC	TCGA-D1-A176-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830386	72830386	Frame_Shift_Del	G	-	p.P2065fs
UCEC	TCGA-D1-A176-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72830903	72830904	Frame_Shift_Del	CT	-	p.R1893fs
UCEC	TCGA-D1-A176-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232950	19232950	Frame_Shift_Del	A	-	p.S467fs
UCEC	TCGA-D1-A176-01	SAFB2	ENST00000252542.4,ENST00000589925.1	chr19	5587878:5587991:5590288:5590419:5591758:5591804,	5590289	5590419	5590343	5590343	Frame_Shift_Del	C	-	p.G824fs
UCEC	TCGA-D1-A176-01	PIN1	ENST00000587625.1,ENST00000247970.4,ENST00000588695.1	chr19	9946044:9946078:9949111:9949324:9958705:9958816,	9949112	9949324	9949200	9949200	Frame_Shift_Del	G	-	p.Q49fs
UCEC	TCGA-D1-A177-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889626	25889627	Frame_Shift_Ins	-	C	p.T200fs
UCEC	TCGA-D1-A177-01	CCDC18	ENST00000401026.3,ENST00000338949.4,ENST00000455267.1,ENST00000334652.5,ENST00000370276.1,ENST00000343253.7,ENST00000557479.1	chr1	93672667:93672955:93676358:93676483:93677657:93677818,	93676359	93676483	93676361	93676361	Frame_Shift_Del	A	-	p.L404fs
UCEC	TCGA-D1-A177-01	TARS2	ENST00000369064.3,ENST00000369051.3,ENST00000606933.1,ENST00000369054.2,ENST00000467982.2	chr1	150476810:150476911:150477107:150477209:150477381:150477454,	150477108	150477209	150477199	150477199	Frame_Shift_Del	G	-	p.G604fs
UCEC	TCGA-D1-A177-01	HAX1	ENST00000328703.7,ENST00000471326.1,ENST00000457918.2	chr1	154245143:154245252:154246249:154246437:154247425:154247477,154245817:154246010:154246249:154246437:154247425:154247477,154245955:154246074:154246249:154246437:154247425:154247477,	154246250	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F149fs
UCEC	TCGA-D1-A177-01	HAX1	ENST00000483970.2	chr1	154245955:154246074:154246225:154246437:154247425:154247477,	154246226	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F149fs
UCEC	TCGA-D1-A177-01	HAX1	ENST00000531435.1,ENST00000477780.2	chr1	154245143:154245252:154245811:154246437:154247425:154247477,	154245812	154246437	154246356	154246357	Frame_Shift_Ins	-	G	p.F149fs
UCEC	TCGA-D1-A177-01	DCST2	ENST00000368424.3,ENST00000485982.1,ENST00000295536.5,ENST00000368423.1	chr1	154999023:154999191:155001708:155001873:155002559:155002717,	155001709	155001873	155001838	155001838	Frame_Shift_Del	A	-	p.Y405fs
UCEC	TCGA-D1-A177-01	RCSD1	ENST00000367854.3	chr1	167653141:167653238:167654657:167654747:167659285:167659357,	167654658	167654747	167654710	167654711	Frame_Shift_Ins	-	C	p.F54fs
UCEC	TCGA-D1-A177-01	KIFAP3	ENST00000538366.1	chr1	170015852:170016007:170024445:170024577:170043576:170043729,	170024446	170024577	170024446	170024447	Frame_Shift_Ins	-	T	p.I55_splice
UCEC	TCGA-D1-A177-01	PPFIA4	ENST00000295706.4,ENST00000599966.1	chr1	203030097:203030160:203032955:203033131:203036822:203036893,	203032956	203033131	203033007	203033007	Frame_Shift_Del	C	-	p.P1101fs
UCEC	TCGA-D1-A177-01	CENPF	ENST00000366955.3	chr1	214813263:214816667:214817899:214820743:214822017:214822170,	214817900	214820743	214818825	214818826	Frame_Shift_Ins	-	A	p.S1971fs
UCEC	TCGA-D1-A177-01	JMJD4	ENST00000366758.3,ENST00000438896.2	chr1	227920629:227920728:227921114:227921382:227921607:227921733,	227921115	227921382	227921299	227921299	Frame_Shift_Del	G	-	p.P259fs
UCEC	TCGA-D1-A177-01	PXDN	ENST00000252804.4	chr2	1648389:1648524:1651943:1653447:1657399:1657557,	1651944	1653447	1652984	1652984	Frame_Shift_Del	G	-	p.P856fs
UCEC	TCGA-D1-A177-01	RASGRP3	ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33783277:33783403:33783738:33784097:33787795:33789672,	33783739	33784097	33783830	33783831	Frame_Shift_Ins	-	A	p.R599fs
UCEC	TCGA-D1-A177-01	NCAPH	ENST00000427946.1,ENST00000435975.1,ENST00000240423.4,ENST00000455200.1	chr2	97024782:97024931:97025880:97025987:97026325:97026448,	97025881	97025987	97025921	97025921	Frame_Shift_Del	A	-	p.T466fs
UCEC	TCGA-D1-A177-01	ZRANB3	ENST00000412849.1,ENST00000403017.2,ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	135957923:135958010:135960401:135960533:135965003:135965088,	135960402	135960533	135960422	135960423	Frame_Shift_Del	AG	-	p.L1040fs
UCEC	TCGA-D1-A177-01	HOXD3	ENST00000249440.3	chr2	177028804:177028896:177033758:177034383:177036244:177037813,	177033759	177034383	177033976	177033976	Frame_Shift_Del	C	-	p.T45fs
UCEC	TCGA-D1-A177-01	SLC6A6	ENST00000458124.1,ENST00000427436.1	chr3	14509360:14509464:14513712:14513825:14518712:14518850,	14513713	14513825	14513785	14513785	Frame_Shift_Del	T	-	p.L390fs
UCEC	TCGA-D1-A177-01	SLC12A8	ENST00000465475.1,ENST00000483944.1	chr3	124837612:124837700:124839442:124839530:124854512:124854626,124837612:124837700:124839442:124839530:124842373:124842443,	124839443	124839530	124839503	124839503	Frame_Shift_Del	C	-	p.G284fs
UCEC	TCGA-D1-A177-01	EPHB1	ENST00000398015.3	chr3	134644657:134644722:134670212:134670894:134825289:134825445,	134670213	134670894	134670328	134670328	Frame_Shift_Del	G	-	p.R80fs
UCEC	TCGA-D1-A177-01	DROSHA	ENST00000344624.3,ENST00000511367.2	chr5	31515100:31515326:31521229:31521322:31526185:31526397,31515560:31515671:31521229:31521322:31526185:31526344,	31521230	31521322	31521250	31521250	Frame_Shift_Del	T	-	p.K309fs
UCEC	TCGA-D1-A177-01	SPEF2	ENST00000509059.1,ENST00000503074.1,ENST00000440995.2,ENST00000356031.3	chr5	35704655:35704764:35705752:35705910:35709049:35709223,	35705753	35705910	35705894	35705894	Frame_Shift_Del	A	-	p.A883fs
UCEC	TCGA-D1-A177-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247869	55247869	Frame_Shift_Del	T	-	p.K529fs
UCEC	TCGA-D1-A177-01	SREK1IP1	ENST00000495198.2,ENST00000513458.4	chr5	64023933:64024006:64036883:64037027:64050141:64050189,	64036884	64037027	64036929	64036929	Frame_Shift_Del	C	-	p.E54fs
UCEC	TCGA-D1-A177-01	BHMT2	ENST00000521567.1,ENST00000255192.3	chr5	78379014:78379197:78379450:78379679:78384315:78385018,	78379451	78379679	78379600	78379600	Frame_Shift_Del	T	-	p.F311fs
UCEC	TCGA-D1-A177-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835229	82835232	Frame_Shift_Del	AACA	-	p.E2136fs
UCEC	TCGA-D1-A177-01	ZNF292	ENST00000369577.3	chr6	87926016:87926095:87928313:87928449:87943042:87943245,	87928314	87928449	87928358	87928358	Frame_Shift_Del	T	-	p.H149fs
UCEC	TCGA-D1-A177-01	ASCC3	ENST00000324696.4	chr6	101253635:101253756:101296023:101296583:101311939:101312090,101253635:101253756:101296023:101296583:101315783:101315908,	101296024	101296583	101296335	101296336	Frame_Shift_Ins	-	A	p.F163fs
UCEC	TCGA-D1-A177-01	TULP4	ENST00000367097.3	chr6	158919700:158919844:158922709:158925210:158927609:158929408,	158922710	158925210	158923752	158923753	Frame_Shift_Ins	-	G	p.P1019fs
UCEC	TCGA-D1-A177-01	ACTB	ENST00000477812.1	chr7	5568323:5568350:5568791:5569294:5570154:5570235,	5568792	5569294	5569206	5569207	Frame_Shift_Ins	-	G	p.R28fs
UCEC	TCGA-D1-A177-01	ACTB	ENST00000462494.1,ENST00000425660.1,ENST00000331789.5	chr7	5568912:5569031:5569165:5569294:5570154:5570214,	5569166	5569294	5569206	5569207	Frame_Shift_Ins	-	G	p.R28fs
UCEC	TCGA-D1-A177-01	ACTB	ENST00000484841.1	chr7	5568912:5569031:5569165:5569364:5570154:5570214,	5569166	5569364	5569206	5569207	Frame_Shift_Ins	-	G	p.R28fs
UCEC	TCGA-D1-A177-01	TECPR1	ENST00000479911.1,ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000490842.1	chr7	97857325:97857428:97858350:97858478:97860272:97860430,	97858351	97858478	97858425	97858425	Frame_Shift_Del	C	-	p.G779fs
UCEC	TCGA-D1-A177-01	PIGO	ENST00000465745.2	chr9	35090462:35090669:35091236:35094356:35095051:35095563,	35091237	35094356	35091711	35091711	Frame_Shift_Del	C	-	p.A725fs
UCEC	TCGA-D1-A177-01	TSC1	ENST00000298552.3,ENST00000440111.2,ENST00000545250.1	chr9	135782687:135782757:135785957:135786079:135786388:135786500,	135785958	135786079	135785964	135785964	Frame_Shift_Del	G	-	p.P419fs
UCEC	TCGA-D1-A177-01	DPP7	ENST00000463619.1,ENST00000483783.1,ENST00000371579.2	chr9	140006141:140006206:140006324:140006481:140006563:140006621,	140006325	140006481	140006327	140006327	Frame_Shift_Del	C	-	p.G402fs
UCEC	TCGA-D1-A177-01	ABI1	ENST00000376142.2,ENST00000376134.3,ENST00000359188.4,ENST00000376160.1,ENST00000355394.4,ENST00000376140.3,ENST00000376139.2	chr10	27040526:27040712:27044583:27044670:27054146:27054247,27040526:27040712:27044583:27044670:27047990:27048164,	27044584	27044670	27044652	27044652	Frame_Shift_Del	G	-	p.P366fs
UCEC	TCGA-D1-A177-01	RET	ENST00000340058.5,ENST00000355710.3	chr10	43595906:43596170:43597789:43598077:43600399:43600641,	43597790	43598077	43597801	43597801	Frame_Shift_Del	C	-	p.P117fs
UCEC	TCGA-D1-A177-01	ARHGAP22	ENST00000417247.2,ENST00000249601.4,ENST00000417912.2,ENST00000374172.1,ENST00000435790.2,ENST00000374170.1,ENST00000460425.1	chr10	49654600:49654662:49658303:49659183:49661346:49661468,	49658304	49659183	49658838	49658838	Frame_Shift_Del	C	-	p.G461fs
UCEC	TCGA-D1-A177-01	FAS	ENST00000352159.4,ENST00000477270.1,ENST00000487314.1,ENST00000357339.2,ENST00000313771.5,ENST00000355740.2,ENST00000355279.2,ENST00000371857.3	chr10	90767456:90767594:90768645:90768754:90770295:90770357,	90768646	90768754	90768708	90768708	Frame_Shift_Del	T	-	p.F133fs
UCEC	TCGA-D1-A177-01	RASSF7	ENST00000454668.2,ENST00000397583.3,ENST00000344375.4,ENST00000397582.3,ENST00000431809.1	chr11	561761:561892:562078:562776:563188:563317,	562079	562776	562143	562144	Frame_Shift_Del	AG	-	p.Q63fs
UCEC	TCGA-D1-A177-01	RASSF7	ENST00000414138.2	chr11	561761:561892:562083:562776:563188:563317,	562084	562776	562143	562144	Frame_Shift_Del	AG	-	p.Q63fs
UCEC	TCGA-D1-A177-01	ART5	ENST00000359918.4	chr11	3660240:3660265:3660871:3661601:3663035:3663094,	3660872	3661601	3660980	3660980	Frame_Shift_Del	G	-	p.H227fs
UCEC	TCGA-D1-A177-01	SYVN1	ENST00000294256.8,ENST00000526060.1,ENST00000377190.3,ENST00000307289.6	chr11	64896034:64896186:64897200:64897387:64897473:64897644,	64897201	64897387	64897362	64897363	Frame_Shift_Ins	-	G	p.P478fs
UCEC	TCGA-D1-A177-01	NPAT	ENST00000610253.1,ENST00000278612.8	chr11	108056129:108056221:108057208:108057296:108058824:108058906,	108057209	108057296	108057280	108057280	Frame_Shift_Del	T	-	p.S219fs
UCEC	TCGA-D1-A177-01	APOA1	ENST00000375323.1,ENST00000236850.4,ENST00000375320.1,ENST00000359492.2	chr11	116706979:116707127:116707716:116707873:116708060:116708123,	116707717	116707873	116707832	116707832	Frame_Shift_Del	G	-	p.Q29fs
UCEC	TCGA-D1-A177-01	LPCAT3	ENST00000540060.1,ENST00000261407.4,ENST00000535479.1,ENST00000540090.1	chr12	7088632:7088741:7090755:7090793:7090971:7091019,7090165:7090344:7090755:7090793:7090971:7091019,	7090756	7090793	7090789	7090790	Frame_Shift_Ins	-	A	p.L155fs
UCEC	TCGA-D1-A177-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57921002	57921002	Frame_Shift_Del	C	-	p.P692fs
UCEC	TCGA-D1-A177-01	FOXN4	ENST00000299162.5	chr12	109724452:109724549:109725201:109725329:109725648:109725762,	109725202	109725329	109725281	109725282	Frame_Shift_Ins	-	G	p.P172fs
UCEC	TCGA-D1-A177-01	NCOR2	ENST00000356219.3	chr12	124846671:124846843:124848224:124848345:124856567:124857156,124846671:124846840:124848224:124848345:124856567:124857156,	124848225	124848345	124848228	124848228	Frame_Shift_Del	G	-	p.P975fs
UCEC	TCGA-D1-A177-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021239	23021239	Frame_Shift_Del	T	-	p.K33fs
UCEC	TCGA-D1-A177-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44053621:44053729:44055274:44055404:44057647:44057763,	44055275	44055404	44055318	44055318	Frame_Shift_Del	A	-	p.L172fs
UCEC	TCGA-D1-A177-01	PDIA3	ENST00000538521.1,ENST00000300289.5,ENST00000434494.1	chr15	44055274:44055404:44057647:44057764:44058084:44058210,	44057648	44057764	44057758	44057758	Frame_Shift_Del	A	-	p.E238fs
UCEC	TCGA-D1-A177-01	NTHL1	ENST00000566380.1	chr16	2093567:2093727:2096128:2096367:2097709:2097744,	2096129	2096367	2096132	2096133	Frame_Shift_Ins	-	G	p.P125fs
UCEC	TCGA-D1-A177-01	TAF1C	ENST00000544090.1,ENST00000341690.6	chr16	84212727:84213457:84213551:84213686:84213775:84213934,	84213552	84213686	84213650	84213651	Frame_Shift_Ins	-	G	p.Q534fs
UCEC	TCGA-D1-A177-01	TAF1C	ENST00000570117.1,ENST00000566732.1,ENST00000564774.1,ENST00000567759.1,ENST00000541676.1,ENST00000563428.1,ENST00000378541.4,ENST00000564208.1	chr16	84212727:84213457:84213551:84213689:84213775:84213934,	84213552	84213689	84213650	84213651	Frame_Shift_Ins	-	G	p.Q534fs
UCEC	TCGA-D1-A177-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P597fs
UCEC	TCGA-D1-A177-01	EPN2	ENST00000585097.1,ENST00000347697.2,ENST00000571254.1,ENST00000395620.2,ENST00000395618.3,ENST00000575595.1,ENST00000494192.2,ENST00000314728.5	chr17	19232023:19232200:19232873:19232960:19235165:19235286,	19232874	19232960	19232950	19232950	Frame_Shift_Del	A	-	p.S467fs
UCEC	TCGA-D1-A177-01	WIPF2	ENST00000582781.1,ENST00000494757.1,ENST00000585043.1,ENST00000583130.1,ENST00000323571.4	chr17	38418776:38418893:38420741:38421398:38430041:38430251,	38420742	38421398	38420993	38420993	Frame_Shift_Del	C	-	p.P189fs
UCEC	TCGA-D1-A177-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328259	40328259	Frame_Shift_Del	C	-	p.G214fs
UCEC	TCGA-D1-A177-01	ETV4	ENST00000590236.1,ENST00000538265.1,ENST00000591713.1,ENST00000393664.2,ENST00000319349.5,ENST00000545954.1	chr17	41610297:41610307:41610554:41610716:41611226:41611350,	41610555	41610716	41610701	41610701	Frame_Shift_Del	G	-	p.P133fs
UCEC	TCGA-D1-A177-01	BCL2	ENST00000333681.4	chr18	60795444:60795992:60985314:60986185:60986406:60986613,	60985315	60986185	60985781	60985781	Frame_Shift_Del	G	-	p.P40fs
UCEC	TCGA-D1-A177-01	EIF3G	ENST00000253108.4,ENST00000588709.1,ENST00000587590.1,ENST00000589009.1,ENST00000589454.1,ENST00000593066.1,ENST00000587993.1	chr19	10227647:10227665:10227759:10227864:10229343:10229403,	10227760	10227864	10227826	10227826	Frame_Shift_Del	G	-	p.P113fs
UCEC	TCGA-D1-A177-01	LDLR	ENST00000558013.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1	chr19	11213339:11213462:11215895:11216276:11217240:11217363,	11215896	11216276	11216181	11216182	Frame_Shift_Ins	-	C	p.F200fs
UCEC	TCGA-D1-A177-01	GP6	ENST00000310373.3,ENST00000417454.1	chr19	55530019:55530079:55536585:55536639:55538945:55539230,	55536586	55536639	55536623	55536623	Frame_Shift_Del	G	-	p.P209fs
UCEC	TCGA-D1-A177-01	PCSK2	ENST00000262545.2,ENST00000536609.1,ENST00000377899.1	chr20	17434386:17434602:17436992:17437093:17445970:17446198,	17436993	17437093	17437051	17437051	Frame_Shift_Del	C	-	p.A387fs
UCEC	TCGA-D1-A177-01	NFS1	ENST00000374092.4,ENST00000541387.1,ENST00000374085.1,ENST00000397425.1,ENST00000489163.1,ENST00000540053.1	chr20	34262433:34262539:34262966:34263124:34268658:34268793,	34262967	34263124	34263057	34263057	Frame_Shift_Del	C	-	p.G286fs
UCEC	TCGA-D1-A177-01	ZMYND8	ENST00000461685.1,ENST00000360911.3,ENST00000468376.2,ENST00000262975.4,ENST00000311275.7,ENST00000355972.4,ENST00000467200.2,ENST00000536340.1,ENST00000372023.3,ENST00000540497.1,ENST00000446994.2,ENST00000471951.2,ENST00000352431.2,ENST00000396281.4	chr20	45865069:45865260:45874751:45875261:45878030:45878183,45867639:45867882:45874751:45875261:45878030:45878183,	45874752	45875261	45875072	45875072	Frame_Shift_Del	T	-	p.K662fs
UCEC	TCGA-D1-A177-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000379960.5,ENST00000399326.3,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1	chr21	35172226:35172233:35183278:35183526:35186216:35186376,	35183279	35183526	35183292	35183292	Frame_Shift_Del	A	-	p.Q778fs
UCEC	TCGA-D1-A177-01	PCNT	ENST00000359568.5,ENST00000480896.1	chr21	47862409:47862486:47863722:47863861:47864606:47864734,	47863723	47863861	47863768	47863768	Frame_Shift_Del	C	-	p.S3249fs
UCEC	TCGA-D1-A177-01	CCDC120	ENST00000603986.1,ENST00000603906.1,ENST00000422185.2	chrX	48923277:48923376:48924711:48925626:48926079:48926305,	48924712	48925626	48925140	48925140	Frame_Shift_Del	G	-	p.W462fs
UCEC	TCGA-D1-A177-01	RPS6KA6	ENST00000543399.1,ENST00000262752.2	chrX	83401985:83402066:83403049:83403131:83411082:83411199,	83403050	83403131	83403063	83403063	Frame_Shift_Del	T	-	p.K109fs
UCEC	TCGA-D1-A17A-01	LDLRAP1	ENST00000488127.1,ENST00000374338.4	chr1	25889134:25889207:25889560:25889644:25890151:25890282,	25889561	25889644	25889626	25889627	Frame_Shift_Ins	-	C	p.T200fs
UCEC	TCGA-D1-A17A-01	COL11A1	ENST00000512756.1,ENST00000353414.4,ENST00000358392.2,ENST00000370096.3	chr1	103471817:103471871:103474018:103474072:103477968:103478025,	103474019	103474072	103474067	103474067	Frame_Shift_Del	C	-	p.G557fs
UCEC	TCGA-D1-A17A-01	EMILIN1	ENST00000380320.4	chr2	27303599:27303820:27304950:27306879:27307282:27307399,	27304951	27306879	27305818	27305819	Frame_Shift_Ins	-	G	p.L460fs
UCEC	TCGA-D1-A17A-01	BOLA3	ENST00000295326.4	chr2	74362541:74362785:74372315:74372430:74374947:74375032,	74372316	74372430	74372357	74372357	Frame_Shift_Del	T	-	p.K43fs
UCEC	TCGA-D1-A17A-01	MBD4	ENST00000503197.1,ENST00000507208.1,ENST00000249910.1	chr3	129152904:129152979:129155285:129156151:129156562:129156788,	129155286	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.K313fs
UCEC	TCGA-D1-A17A-01	MBD4	ENST00000429544.2	chr3	129152904:129152979:129155303:129156151:129156562:129156788,	129155304	129156151	129155548	129155548	Frame_Shift_Del	T	-	p.K313fs
UCEC	TCGA-D1-A17A-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155403	106155404	Frame_Shift_Del	TC	-	p.S123fs
UCEC	TCGA-D1-A17A-01	LARP7	ENST00000324052.6,ENST00000511529.1,ENST00000513553.1,ENST00000344442.5,ENST00000509622.1,ENST00000509061.1	chr4	113568874:113568990:113570690:113570842:113571616:113571738,	113570691	113570842	113570754	113570754	Frame_Shift_Del	A	-	p.L409fs
UCEC	TCGA-D1-A17A-01	LIFR	ENST00000503088.1,ENST00000263409.4,ENST00000453190.2	chr5	38499614:38499685:38502738:38502901:38504077:38504223,	38502739	38502901	38502761	38502761	Frame_Shift_Del	T	-	p.K526fs
UCEC	TCGA-D1-A17A-01	PCDH1	ENST00000287008.3	chr5	141236816:141237036:141242796:141244992:141248133:141248996,	141242797	141244992	141242815	141242815	Frame_Shift_Del	G	-	p.P1027fs
UCEC	TCGA-D1-A17A-01	PRRC2B	ENST00000372249.1,ENST00000357304.4	chr9	134348980:134349111:134349840:134351922:134353130:134353291,	134349841	134351922	134351425	134351425	Frame_Shift_Del	C	-	p.R1303fs
UCEC	TCGA-D1-A17A-01	WIPF2	ENST00000582781.1,ENST00000394103.3,ENST00000323571.4	chr17	38375608:38375744:38412642:38412774:38416786:38416879,	38412643	38412774	38412736	38412736	Frame_Shift_Del	C	-	p.P9fs
UCEC	TCGA-D1-A17A-01	CACNA1G	ENST00000354983.4,ENST00000507336.1,ENST00000359106.5	chr17	48696015:48696369:48697043:48697187:48701267:48701436,48696015:48696369:48697043:48697187:48699020:48699155,	48697044	48697187	48697144	48697166	Frame_Shift_Del	CTGCCTTCCCTTCTGCCCCCAGC	-	p.S1961fs
UCEC	TCGA-D1-A17A-01	B3GNTL1	ENST00000572977.1,ENST00000571954.1,ENST00000576599.1,ENST00000320865.3	chr17	80918932:80919057:80923526:80923622:80962990:80963086,	80923527	80923622	80923602	80923603	Frame_Shift_Ins	-	T	p.P175fs
UCEC	TCGA-D1-A17A-01	SLC5A5	ENST00000222248.3	chr19	17985472:17985540:17986760:17986915:17988531:17988672,	17986761	17986915	17986863	17986863	Frame_Shift_Del	C	-	p.P216fs
UCEC	TCGA-D1-A17B-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.P2802fs
UCEC	TCGA-D1-A17B-01	EPB41	ENST00000347529.3	chr1	29313959:29314417:29319841:29320054:29323726:29323831,29313959:29314417:29319841:29320054:29338376:29338419,	29319842	29320054	29319991	29319992	Frame_Shift_Del	AC	-	p.K206fs
UCEC	TCGA-D1-A17B-01	ZMYM4	ENST00000457946.1,ENST00000373297.2,ENST00000314607.6	chr1	35835629:35835714:35835972:35836228:35846859:35847034,	35835973	35836228	35836080	35836080	Frame_Shift_Del	A	-	p.K345fs
UCEC	TCGA-D1-A17B-01	ZNF148	ENST00000492394.1,ENST00000360647.4	chr3	125006946:125007072:125032151:125032500:125042152:125042288,	125032152	125032500	125032218	125032219	Frame_Shift_Ins	-	T	p.N89fs
UCEC	TCGA-D1-A17B-01	TRA2B	ENST00000382191.4,ENST00000487615.1,ENST00000453386.2,ENST00000492417.1,ENST00000466832.1,ENST00000463328.1,ENST00000456380.1	chr3	185636152:185636223:185637224:185637284:185638891:185638975,185636152:185636226:185637224:185637284:185638891:185638969,	185637225	185637284	185637275	185637276	Frame_Shift_Ins	-	T	p.G244fs
UCEC	TCGA-D1-A17B-01	RWDD4	ENST00000510702.1	chr4	184572136:184572284:184572370:184572476:184580081:184580304,184572136:184572284:184572370:184572476:184577033:184577114,	184572371	184572476	184572382	184572382	Frame_Shift_Del	A	-	p.F68fs
UCEC	TCGA-D1-A17B-01	RWDD4	ENST00000327570.9,ENST00000326397.5	chr4	184572136:184572284:184572370:184572480:184577033:184577114,	184572371	184572480	184572382	184572382	Frame_Shift_Del	A	-	p.F68fs
UCEC	TCGA-D1-A17B-01	DDX46	ENST00000452510.2,ENST00000507392.1,ENST00000354283.4	chr5	134106592:134106689:134109385:134109551:134113263:134113415,	134109386	134109551	134109524	134109524	Frame_Shift_Del	A	-	p.K196fs
UCEC	TCGA-D1-A17B-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675269	176675269	Frame_Shift_Del	A	-	p.K1529fs
UCEC	TCGA-D1-A17B-01	C7orf57	ENST00000435376.1,ENST00000430738.1,ENST00000420324.1,ENST00000348904.3,ENST00000539619.1	chr7	48083077:48083186:48086056:48086213:48089476:48089574,	48086057	48086213	48086205	48086205	Frame_Shift_Del	A	-	p.K167fs
UCEC	TCGA-D1-A17B-01	PLOD3	ENST00000478082.1,ENST00000223127.3	chr7	100855555:100855655:100855810:100855936:100856122:100856224,	100855811	100855936	100855926	100855927	Frame_Shift_Ins	-	G	p.R297fs
UCEC	TCGA-D1-A17B-01	H2AFY2	ENST00000373255.4	chr10	71849815:71849922:71851512:71851710:71853490:71853601,	71851513	71851710	71851664	71851665	Frame_Shift_Ins	-	G	p.K144fs
UCEC	TCGA-D1-A17B-01	ZRANB1	ENST00000359653.4	chr10	126662768:126662967:126670277:126670398:126671743:126671873,	126670278	126670398	126670334	126670335	Frame_Shift_Ins	-	T	p.H521fs
UCEC	TCGA-D1-A17B-01	TCTN2	ENST00000426174.2,ENST00000303372.5	chr12	124163735:124163836:124171382:124171582:124172597:124172724,	124171383	124171582	124171534	124171534	Frame_Shift_Del	C	-	p.S239fs
UCEC	TCGA-D1-A17B-01	PROSER1	ENST00000352251.3,ENST00000350125.3	chr13	39586219:39586370:39586827:39588613:39591636:39591681,	39586828	39588613	39588302	39588302	Frame_Shift_Del	A	-	p.S363fs
UCEC	TCGA-D1-A17B-01	DCT	ENST00000446125.1	chr13	95118811:95118912:95120999:95121299:95131214:95131923,	95121000	95121299	95121040	95121040	Frame_Shift_Del	A	-	p.F185fs
UCEC	TCGA-D1-A17B-01	ICAM3	ENST00000160262.5,ENST00000589261.1	chr19	10445203:10445458:10445741:10446029:10446346:10446449,	10445742	10446029	10446011	10446011	Frame_Shift_Del	G	-	p.P223fs
UCEC	TCGA-D1-A17B-01	ICAM3	ENST00000592439.1	chr19	10445203:10445458:10445816:10446029:10446346:10446449,	10445817	10446029	10446011	10446011	Frame_Shift_Del	G	-	p.P223fs
UCEC	TCGA-D1-A17B-01	ANKRD27	ENST00000587352.1,ENST00000306065.4	chr19	33131212:33131291:33132929:33133051:33134028:33134105,	33132930	33133051	33132995	33132995	Frame_Shift_Del	G	-	p.P280fs
UCEC	TCGA-D1-A17B-01	SLCO4A1	ENST00000370507.1,ENST00000217159.1,ENST00000470412.1	chr20	61299221:61299262:61299363:61299536:61299828:61299893,	61299364	61299536	61299478	61299481	Frame_Shift_Del	TTCG	-	p.F585fs
UCEC	TCGA-D1-A17C-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101256	27101266	Frame_Shift_Del	GCACGGGCTCT	-	p.S1513fs
UCEC	TCGA-D1-A17C-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000514442.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149754516:149754726:149754901:149755117:149755283:149755472,	149754902	149755117	149754989	149754989	Frame_Shift_Del	C	-	p.P526fs
UCEC	TCGA-D1-A17C-01	COL1A1	ENST00000476387.1,ENST00000225964.5	chr17	48268269:48268285:48268743:48268851:48269148:48269247,	48268744	48268851	48268763	48268763	Frame_Shift_Del	G	-	p.P739fs
UCEC	TCGA-D1-A17D-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-D1-A17D-01	EPHA2	ENST00000480202.1,ENST00000358432.5	chr1	16461530:16461684:16462149:16462265:16464347:16464680,	16462150	16462265	16462199	16462199	Frame_Shift_Del	G	-	p.P460fs
UCEC	TCGA-D1-A17D-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.P2802fs
UCEC	TCGA-D1-A17D-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277936	186277936	Frame_Shift_Del	A	-	p.K1029fs
UCEC	TCGA-D1-A17D-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612536	13612536	Frame_Shift_Del	C	-	p.G227fs
UCEC	TCGA-D1-A17D-01	FBLN2	ENST00000404922.3,ENST00000295760.7	chr3	13590680:13590708:13611814:13613161:13649561:13649673,	13611815	13613161	13612588	13612588	Frame_Shift_Del	C	-	p.P245fs
UCEC	TCGA-D1-A17D-01	STAB1	ENST00000321725.6	chr3	52549438:52549522:52550058:52550254:52550371:52550467,	52550059	52550254	52550119	52550119	Frame_Shift_Del	G	-	p.G1337fs
UCEC	TCGA-D1-A17D-01	EIF2A	ENST00000477551.1,ENST00000465535.1,ENST00000487799.1,ENST00000383043.3,ENST00000406576.3,ENST00000273435.5,ENST00000460851.1	chr3	150285983:150286079:150289744:150290316:150293435:150293549,	150289745	150290316	150289746	150289746	Frame_Shift_Del	A	-	p.P271_splice
UCEC	TCGA-D1-A17D-01	FAM193A	ENST00000513350.1,ENST00000382839.3,ENST00000502458.1,ENST00000505311.1,ENST00000545951.1,ENST00000324666.5	chr4	2696672:2696856:2698089:2698320:2701406:2701665,	2698090	2698320	2698177	2698177	Frame_Shift_Del	A	-	p.K1031fs
UCEC	TCGA-D1-A17D-01	SYNPO	ENST00000307662.4	chr5	150020239:150020416:150027505:150029865:150035965:150038782,	150027506	150029865	150028582	150028582	Frame_Shift_Del	G	-	p.G493fs
UCEC	TCGA-D1-A17D-01	SH3PXD2B	ENST00000311601.5,ENST00000519643.1	chr5	171800793:171800819:171809039:171809131:171821566:171821643,	171809040	171809131	171809110	171809111	Frame_Shift_Ins	-	G	p.P110fs
UCEC	TCGA-D1-A17D-01	RIPK1	ENST00000380409.2,ENST00000259808.4,ENST00000479389.1,ENST00000541791.1	chr6	3085492:3085642:3089814:3089891:3104458:3104549,	3089815	3089891	3089839	3089842	Frame_Shift_Del	TTTA	-	p.F288fs
UCEC	TCGA-D1-A17D-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
UCEC	TCGA-D1-A17D-01	PHACTR2	ENST00000427704.2,ENST00000440869.2	chr6	144074890:144075049:144081537:144081777:144086397:144086611,	144081538	144081777	144081696	144081696	Frame_Shift_Del	A	-	p.K205fs
UCEC	TCGA-D1-A17D-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485488	Frame_Shift_Del	G	-	p.T1314fs
UCEC	TCGA-D1-A17D-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-D1-A17D-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K510fs
UCEC	TCGA-D1-A17D-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1268674	1268674	Frame_Shift_Del	C	-	p.P3522fs
UCEC	TCGA-D1-A17D-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1270345	1270345	Frame_Shift_Del	C	-	p.P4079fs
UCEC	TCGA-D1-A17D-01	LTBP3	ENST00000536982.1,ENST00000526927.1,ENST00000530866.1,ENST00000528516.1,ENST00000322147.4,ENST00000301873.5,ENST00000532932.1,ENST00000527339.1	chr11	65313912:65314035:65314268:65314391:65314909:65315036,	65314269	65314391	65314283	65314283	Frame_Shift_Del	C	-	p.G739fs
UCEC	TCGA-D1-A17D-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874011	104874011	Frame_Shift_Del	T	-	p.N191fs
UCEC	TCGA-D1-A17D-01	RPS6KL1	ENST00000555834.1	chr14	75375552:75375635:75375803:75376851:75377950:75377979,	75375804	75376851	75376484	75376484	Frame_Shift_Del	C	-	p.G344fs
UCEC	TCGA-D1-A17D-01	RPS6KL1	ENST00000358328.4,ENST00000354625.2,ENST00000557413.1,ENST00000555009.1,ENST00000555647.1	chr14	75375803:75375893:75376245:75376851:75377950:75377979,	75376246	75376851	75376484	75376484	Frame_Shift_Del	C	-	p.G344fs
UCEC	TCGA-D1-A17D-01	JAG2	ENST00000347004.2,ENST00000553051.1,ENST00000331782.3	chr14	105618497:105618628:105621898:105621959:105622074:105622326,	105621899	105621959	105621923	105621923	Frame_Shift_Del	C	-	p.G255fs
UCEC	TCGA-D1-A17D-01	STOML1	ENST00000359750.4,ENST00000566081.1,ENST00000562453.1,ENST00000565240.1,ENST00000316900.5,ENST00000561656.1,ENST00000541638.1	chr15	74281132:74281143:74281448:74281598:74282691:74282798,	74281449	74281598	74281541	74281541	Frame_Shift_Del	G	-	p.Q100fs
UCEC	TCGA-D1-A17D-01	STOML1	ENST00000567052.1	chr15	74281132:74281143:74281370:74281598:74282691:74282798,	74281371	74281598	74281541	74281541	Frame_Shift_Del	G	-	p.Q100fs
UCEC	TCGA-D1-A17D-01	CREBBP	ENST00000576720.1	chr16	3788559:3788673:3789578:3789725:3790399:3790550,3786650:3786816:3789578:3789725:3790399:3790550,	3789579	3789725	3789591	3789591	Frame_Shift_Del	G	-	p.P1423fs
UCEC	TCGA-D1-A17D-01	NDE1	ENST00000396354.1,ENST00000572967.1,ENST00000576502.1,ENST00000396353.2,ENST00000574109.1,ENST00000342673.5,ENST00000396355.1	chr16	15785098:15785180:15788021:15788113:15790565:15790623,	15788022	15788113	15788046	15788046	Frame_Shift_Del	C	-	p.T243fs
UCEC	TCGA-D1-A17D-01	MBTPS1	ENST00000569770.1,ENST00000343411.3,ENST00000565863.1	chr16	84115356:84115513:84118587:84118739:84120962:84121065,	84118588	84118739	84118656	84118656	Frame_Shift_Del	C	-	p.G406fs
UCEC	TCGA-D1-A17D-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7798234:7798468:7798656:7798860:7800400:7800612,	7798657	7798860	7798765	7798765	Frame_Shift_Del	C	-	p.P597fs
UCEC	TCGA-D1-A17D-01	JAG1	ENST00000423891.2,ENST00000254958.5	chr20	10630169:10630283:10630894:10631008:10632228:10632342,	10630895	10631008	10630969	10630969	Frame_Shift_Del	C	-	p.G387fs
UCEC	TCGA-D1-A17D-01	UBASH3A	ENST00000291535.6,ENST00000473381.1,ENST00000398367.1	chr21	43833518:43833632:43836550:43836720:43838509:43838718,43833132:43833331:43836550:43836720:43838509:43838718,	43836551	43836720	43836609	43836609	Frame_Shift_Del	C	-	p.Y242fs
UCEC	TCGA-D1-A17D-01	SEZ6L	ENST00000494013.1	chr22	26747017:26747209:26771543:26771655:26773638:26773686,26761337:26761532:26771543:26771655:26773638:26773686,	26771544	26771655	26771573	26771573	Frame_Shift_Del	G	-	p.G954fs
UCEC	TCGA-D1-A17D-01	SEZ6L	ENST00000529632.2,ENST00000360929.3	chr22	26747017:26747209:26771540:26771655:26773638:26773686,26761337:26761532:26771540:26771655:26773638:26773686,	26771541	26771655	26771573	26771573	Frame_Shift_Del	G	-	p.G954fs
UCEC	TCGA-D1-A17F-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097622	27097622	Frame_Shift_Del	A	-	p.K1071fs
UCEC	TCGA-D1-A17F-01	TMEM39B	ENST00000336294.5,ENST00000468135.1,ENST00000373634.4,ENST00000487305.1,ENST00000441402.1	chr1	32561260:32561363:32566042:32566163:32568031:32568462,32560384:32560572:32566042:32566163:32568031:32568462,	32566043	32566163	32566131	32566132	Frame_Shift_Ins	-	TCCCC	p.I402fs
UCEC	TCGA-D1-A17F-01	ZC3H11A	ENST00000545588.1,ENST00000367214.1,ENST00000367210.1,ENST00000367212.3,ENST00000495527.1,ENST00000332127.4	chr1	203809433:203809502:203816311:203816815:203817458:203817535,	203816312	203816815	203816589	203816590	Frame_Shift_Ins	-	A	p.I440fs
UCEC	TCGA-D1-A17F-01	GOLGA4	ENST00000361924.2,ENST00000437131.1,ENST00000356847.4	chr3	37363221:37363377:37365078:37369316:37369906:37370028,	37365079	37369316	37368314	37368314	Frame_Shift_Del	A	-	p.Q1646fs
UCEC	TCGA-D1-A17F-01	CACNA1D	ENST00000422281.2,ENST00000540742.1	chr3	53796024:53796108:53804450:53804579:53806859:53806925,	53804451	53804579	53804484	53804484	Frame_Shift_Del	T	-	p.F1317fs
UCEC	TCGA-D1-A17F-01	SORBS2	ENST00000437304.2,ENST00000355634.5,ENST00000448662.2,ENST00000418609.1,ENST00000449407.2,ENST00000431808.1,ENST00000284776.7,ENST00000319471.9,ENST00000393528.3	chr4	186510832:186510939:186515039:186515089:186532933:186533134,	186515040	186515089	186515044	186515044	Frame_Shift_Del	C	-	p.E1158fs
UCEC	TCGA-D1-A17F-01	ADHFE1	ENST00000396623.3,ENST00000496501.1,ENST00000449512.1,ENST00000415254.1,ENST00000379385.4,ENST00000276576.7,ENST00000426810.1,ENST00000424777.2	chr8	67356871:67356983:67357452:67357649:67359498:67359576,	67357453	67357649	67357596	67357596	Frame_Shift_Del	C	-	p.A166fs
UCEC	TCGA-D1-A17F-01	RSU1	ENST00000345264.5,ENST00000377921.3,ENST00000602389.1,ENST00000377911.1	chr10	16796869:16796988:16806388:16806509:16824032:16824083,	16806389	16806509	16806456	16806457	Frame_Shift_Ins	-	A	p.F71fs
UCEC	TCGA-D1-A17F-01	TDRD1	ENST00000251864.2,ENST00000369281.2	chr10	115985807:115985975:115986830:115987058:115987668:115987715,	115986831	115987058	115987017	115987018	Frame_Shift_Ins	-	A	p.A1121fs
UCEC	TCGA-D1-A17F-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577801	14577802	Frame_Shift_Ins	-	A	p.E318fs
UCEC	TCGA-D1-A17F-01	ELK3	ENST00000228741.3	chr12	96617342:96617551:96640717:96641512:96653508:96653631,	96640718	96641512	96641028	96641029	Frame_Shift_Ins	-	C	p.S173fs
UCEC	TCGA-D1-A17H-01	PRDM2	ENST00000484063.2	chr1	14057512:14057612:14059273:14059350:14068499:14068652,	14059274	14059350	14059312	14059312	Frame_Shift_Del	T	-	p.F56fs
UCEC	TCGA-D1-A17H-01	PRDM2	ENST00000376048.5,ENST00000235372.7,ENST00000311066.5	chr1	14057512:14057612:14059273:14059377:14068499:14068652,	14059274	14059377	14059312	14059312	Frame_Shift_Del	T	-	p.F56fs
UCEC	TCGA-D1-A17H-01	MYO7B	ENST00000428314.1,ENST00000389524.4,ENST00000409816.2	chr2	128331494:128331637:128334169:128334283:128335707:128335861,	128334170	128334283	128334214	128334214	Frame_Shift_Del	G	-	p.M260fs
UCEC	TCGA-D1-A17H-01	DYNC1I2	ENST00000409773.1,ENST00000445378.1,ENST00000409453.1,ENST00000456808.1,ENST00000358002.6,ENST00000409317.1,ENST00000411953.1,ENST00000409197.1	chr2	172544010:172544137:172546656:172546773:172549286:172549404,172544301:172544383:172546656:172546773:172549286:172549404,	172546657	172546773	172546762	172546762	Frame_Shift_Del	A	-	p.K33fs
UCEC	TCGA-D1-A17H-01	ZDHHC3	ENST00000296127.3,ENST00000424952.2	chr3	44986659:44986784:45000622:45000952:45017424:45017658,	45000623	45000952	45000844	45000845	Frame_Shift_Ins	-	G	p.P28fs
UCEC	TCGA-D1-A17H-01	COL7A1	ENST00000454817.1,ENST00000487017.1,ENST00000328333.8	chr3	48621467:48621494:48621730:48621808:48621917:48621953,	48621731	48621808	48621801	48621801	Frame_Shift_Del	G	-	p.P1376fs
UCEC	TCGA-D1-A17H-01	MST1R	ENST00000463789.1,ENST00000411578.2,ENST00000296474.3,ENST00000434765.1,ENST00000440292.1,ENST00000344206.4	chr3	49928629:49928739:49928831:49929013:49929190:49929271,	49928832	49929013	49928970	49928970	Frame_Shift_Del	C	-	p.G1132fs
UCEC	TCGA-D1-A17H-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408060	179408061	Frame_Shift_Ins	-	A	p.P109fs
UCEC	TCGA-D1-A17H-01	PARL	ENST00000421484.1,ENST00000311101.5,ENST00000435888.1	chr3	183584412:183584553:183585652:183585848:183602509:183602515,	183585653	183585848	183585824	183585824	Frame_Shift_Del	T	-	p.K50fs
UCEC	TCGA-D1-A17H-01	TMEM41A	ENST00000421852.1	chr3	185208784:185209545:185212410:185212549:185212941:185213103,	185212411	185212549	185212518	185212518	Frame_Shift_Del	A	-	p.F156fs
UCEC	TCGA-D1-A17H-01	MUC4	ENST00000466475.1,ENST00000480843.1,ENST00000470451.1,ENST00000477086.1,ENST00000477756.1,ENST00000463781.3,ENST00000478156.1,ENST00000475231.1,ENST00000479406.1,ENST00000462323.1	chr3	195505173:195505326:195505660:195518368:195538606:195538728,	195505661	195518368	195508996	195508996	Frame_Shift_Del	G	-	p.P3152fs
UCEC	TCGA-D1-A17H-01	SCLT1	ENST00000281142.5,ENST00000506233.1,ENST00000502495.1	chr4	129857809:129858006:129864150:129864343:129867161:129867307,	129864151	129864343	129864163	129864163	Frame_Shift_Del	T	-	p.K540fs
UCEC	TCGA-D1-A17H-01	CENPH	ENST00000283006.2	chr5	68490473:68490522:68492879:68492936:68498332:68498396,68491543:68491618:68492879:68492936:68498332:68498396,	68492880	68492936	68492902	68492902	Frame_Shift_Del	A	-	p.K113fs
UCEC	TCGA-D1-A17H-01	ENC1	ENST00000510316.1	chr5	73925753:73925817:73930508:73932187:73936131:73936254,	73930509	73932187	73930815	73930815	Frame_Shift_Del	C	-	p.G499fs
UCEC	TCGA-D1-A17H-01	ENC1	ENST00000537006.1	chr5	73925753:73925817:73930508:73932323:73936131:73936254,	73930509	73932323	73930815	73930815	Frame_Shift_Del	C	-	p.G499fs
UCEC	TCGA-D1-A17H-01	C6orf201	ENST00000333388.5,ENST00000380175.4	chr6	4099233:4099432:4122182:4122280:4130375:4130595,	4122183	4122280	4122194	4122194	Frame_Shift_Del	A	-	p.Q99fs
UCEC	TCGA-D1-A17H-01	ATF6B	ENST00000375203.3,ENST00000375201.4	chr6	32085363:32085471:32085635:32085815:32086551:32086638,	32085636	32085815	32085784	32085785	Frame_Shift_Del	GA	-	p.S425fs
UCEC	TCGA-D1-A17H-01	SLC17A5	ENST00000355773.5,ENST00000481996.1	chr6	74348134:74348222:74351413:74351647:74354129:74354186,	74351414	74351647	74351530	74351530	Frame_Shift_Del	T	-	p.M137fs
UCEC	TCGA-D1-A17H-01	HIVEP2	ENST00000367604.1,ENST00000012134.2,ENST00000367603.2	chr6	143089518:143089673:143090688:143096262:143097283:143097328,	143090689	143096262	143095322	143095322	Frame_Shift_Del	T	-	p.K185fs
UCEC	TCGA-D1-A17H-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672944	151672945	Frame_Shift_Ins	-	A	p.Q1140fs
UCEC	TCGA-D1-A17H-01	PMS2	ENST00000441476.2,ENST00000265849.7	chr7	6022454:6022622:6026389:6027251:6029430:6029586,	6026390	6027251	6027157	6027157	Frame_Shift_Del	T	-	p.K413fs
UCEC	TCGA-D1-A17H-01	HECW1	ENST00000453890.1,ENST00000395891.2	chr7	43508518:43508704:43519208:43519343:43531673:43531779,	43519209	43519343	43519253	43519253	Frame_Shift_Del	C	-	p.D1048fs
UCEC	TCGA-D1-A17H-01	GPC2	ENST00000471717.1,ENST00000292377.2	chr7	99772307:99772388:99773194:99773517:99773829:99773988,	99773195	99773517	99773286	99773286	Frame_Shift_Del	G	-	p.P186fs
UCEC	TCGA-D1-A17H-01	SRRT	ENST00000347433.4,ENST00000388793.4,ENST00000432932.1,ENST00000457580.2	chr7	100478905:100479034:100479279:100479426:100479673:100479862,	100479280	100479426	100479332	100479332	Frame_Shift_Del	G	-	p.G102fs
UCEC	TCGA-D1-A17H-01	ZC3HAV1	ENST00000464606.1,ENST00000471652.1	chr7	138768525:138768778:138774369:138774505:138793769:138794100,	138774370	138774505	138774379	138774379	Frame_Shift_Del	A	-	p.F145fs
UCEC	TCGA-D1-A17H-01	ADAM28	ENST00000523440.1,ENST00000397649.3,ENST00000437154.2,ENST00000540823.1,ENST00000520448.1,ENST00000265769.4	chr8	24157486:24157590:24167406:24167483:24167675:24167754,	24167407	24167483	24167472	24167473	Frame_Shift_Ins	-	A	p.L72fs
UCEC	TCGA-D1-A17H-01	KCNU1	ENST00000399881.3,ENST00000522372.1	chr8	36766828:36767053:36768447:36768637:36776340:36776415,	36768448	36768637	36768517	36768518	Frame_Shift_Ins	-	C	p.S801fs
UCEC	TCGA-D1-A17H-01	LRRCC1	ENST00000360375.3,ENST00000522567.1,ENST00000517875.1,ENST00000414626.2,ENST00000522770.1	chr8	86038923:86039072:86041409:86041614:86042153:86042293,	86041410	86041614	86041561	86041562	Frame_Shift_Ins	-	A	p.E525fs
UCEC	TCGA-D1-A17H-01	PHF20L1	ENST00000220847.7,ENST00000315808.10,ENST00000361997.5,ENST00000395383.1,ENST00000395390.2,ENST00000395386.2	chr8	133823290:133823373:133826881:133827134:133829132:133829321,	133826882	133827134	133826909	133826909	Frame_Shift_Del	A	-	p.K320fs
UCEC	TCGA-D1-A17H-01	MLLT3	ENST00000355930.6,ENST00000380338.4,ENST00000429426.2	chr9	20365666:20365742:20413718:20414423:20448120:20448264,	20413719	20414423	20413952	20413952	Frame_Shift_Del	T	-	p.R298fs
UCEC	TCGA-D1-A17H-01	SEC16A	ENST00000371706.3,ENST00000290037.6,ENST00000431893.2,ENST00000313050.7,ENST00000453963.1,ENST00000277537.6	chr9	139342535:139342613:139345707:139345860:139347879:139347962,	139345708	139345860	139345823	139345823	Frame_Shift_Del	G	-	p.P2066fs
UCEC	TCGA-D1-A17H-01	ZFAND4	ENST00000374366.3,ENST00000374370.1,ENST00000344646.5	chr10	46120030:46120085:46121398:46122553:46135263:46135411,	46121399	46122553	46122159	46122159	Frame_Shift_Del	A	-	p.L371fs
UCEC	TCGA-D1-A17H-01	VCL	ENST00000211998.4,ENST00000436396.1	chr10	75868776:75868914:75871666:75871870:75873941:75874145,	75871667	75871870	75871743	75871744	Frame_Shift_Ins	-	C	p.V941fs
UCEC	TCGA-D1-A17H-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690811	89690811	Frame_Shift_Del	A	-	p.E73fs
UCEC	TCGA-D1-A17H-01	SMC3	ENST00000462899.1,ENST00000361804.4	chr10	112328695:112328771:112333464:112333503:112335093:112335161,	112333465	112333503	112333494	112333494	Frame_Shift_Del	T	-	p.F41fs
UCEC	TCGA-D1-A17H-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1270286	1270286	Frame_Shift_Del	C	-	p.T4059fs
UCEC	TCGA-D1-A17H-01	TPP1	ENST00000533371.1,ENST00000534644.1,ENST00000299427.6,ENST00000528571.1	chr11	6638241:6638384:6638531:6638659:6638856:6639007,	6638532	6638659	6638544	6638544	Frame_Shift_Del	G	-	p.H166fs
UCEC	TCGA-D1-A17H-01	TIRAP	ENST00000392678.3,ENST00000392680.2,ENST00000392679.1	chr11	126160356:126160480:126160697:126160856:126161319:126161464,126160356:126160480:126160697:126160856:126162371:126162582,	126160698	126160856	126160803	126160806	Frame_Shift_Del	CCTC	-	p.T5fs
UCEC	TCGA-D1-A17H-01	ARHGAP32	ENST00000524655.1,ENST00000533509.1,ENST00000310343.9	chr11	128910822:128910904:128932174:128932252:128933796:128933919,	128932175	128932252	128932218	128932218	Frame_Shift_Del	G	-	p.P293fs
UCEC	TCGA-D1-A17H-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.P732fs
UCEC	TCGA-D1-A17H-01	MVK	ENST00000537237.1,ENST00000546277.1,ENST00000228510.3	chr12	110017606:110017751:110019199:110019355:110023826:110023901,	110019200	110019355	110019240	110019240	Frame_Shift_Del	C	-	p.P138fs
UCEC	TCGA-D1-A17H-01	RSRC2	ENST00000527173.2,ENST00000532695.1	chr12	122991380:122991470:122992764:122992997:122995655:122995735,	122992765	122992997	122992797	122992797	Frame_Shift_Del	T	-	p.R335fs
UCEC	TCGA-D1-A17H-01	RSRC2	ENST00000354654.2,ENST00000433877.2,ENST00000331738.7,ENST00000392442.2	chr12	122991380:122991470:122992764:122992994:122995655:122995735,	122992765	122992994	122992797	122992797	Frame_Shift_Del	T	-	p.R335fs
UCEC	TCGA-D1-A17H-01	LTBP2	ENST00000556690.1,ENST00000261978.4,ENST00000553939.1,ENST00000557425.1	chr14	75002634:75002703:75016565:75016668:75017766:75018053,	75016566	75016668	75016599	75016599	Frame_Shift_Del	C	-	p.V586fs
UCEC	TCGA-D1-A17H-01	CDAN1	ENST00000562465.1	chr15	43018507:43018615:43019865:43019967:43020152:43020231,	43019866	43019967	43019890	43019890	Frame_Shift_Del	C	-	p.E1009fs
UCEC	TCGA-D1-A17H-01	CDAN1	ENST00000356231.3	chr15	43018507:43018615:43019818:43019967:43020152:43020231,	43019819	43019967	43019890	43019890	Frame_Shift_Del	C	-	p.E1009fs
UCEC	TCGA-D1-A17H-01	ABCC6	ENST00000205557.7,ENST00000574094.1,ENST00000456970.2,ENST00000577103.1	chr16	16306041:16306103:16308180:16308306:16313410:16313539,	16308181	16308306	16308208	16308208	Frame_Shift_Del	G	-	p.P191fs
UCEC	TCGA-D1-A17H-01	ACSM5	ENST00000331849.4	chr16	20430549:20430757:20432579:20432723:20435237:20435391,	20432580	20432723	20432663	20432663	Frame_Shift_Del	C	-	p.A236fs
UCEC	TCGA-D1-A17H-01	ERN2	ENST00000256797.4	chr16	23711859:23712025:23712279:23712435:23713472:23713594,	23712280	23712435	23712362	23712365	Frame_Shift_Del	AAGT	-	p.Y473fs
UCEC	TCGA-D1-A17H-01	ERN2	ENST00000562562.1	chr16	23707214:23707299:23711859:23712435:23713472:23713594,	23711860	23712435	23712362	23712365	Frame_Shift_Del	AAGT	-	p.Y473fs
UCEC	TCGA-D1-A17H-01	PDPR	ENST00000561920.1	chr16	70148274:70148343:70154363:70154622:70161162:70161296,	70154364	70154622	70154496	70154496	Frame_Shift_Del	C	-	p.A34fs
UCEC	TCGA-D1-A17H-01	TRPV3	ENST00000573539.1,ENST00000572519.1,ENST00000301365.4,ENST00000571139.1,ENST00000576742.1	chr17	3446767:3446922:3447872:3447959:3448460:3448565,	3447873	3447959	3447925	3447925	Frame_Shift_Del	G	-	p.Q87fs
UCEC	TCGA-D1-A17H-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20107710	20107711	Frame_Shift_Ins	-	AG	p.S116fs
UCEC	TCGA-D1-A17H-01	KANSL1	ENST00000393476.3,ENST00000576137.1,ENST00000262419.6,ENST00000572904.1,ENST00000432791.1,ENST00000574590.1,ENST00000576870.1,ENST00000572218.1	chr17	44110768:44110826:44111526:44111651:44115903:44116052,	44111527	44111651	44111620	44111621	Frame_Shift_Del	CT	-	p.S858fs
UCEC	TCGA-D1-A17H-01	KANSL1	ENST00000575318.1	chr17	44110768:44110826:44111526:44111648:44115903:44116052,	44111527	44111648	44111620	44111621	Frame_Shift_Del	CT	-	p.S858fs
UCEC	TCGA-D1-A17H-01	MED13	ENST00000397786.2	chr17	60069900:60069982:60072512:60072726:60087910:60088594,	60072513	60072726	60072519	60072519	Frame_Shift_Del	T	-	p.K725fs
UCEC	TCGA-D1-A17H-01	UNC13D	ENST00000412096.2,ENST00000207549.4,ENST00000585574.1,ENST00000590762.1,ENST00000591563.1,ENST00000592386.1,ENST00000587504.1,ENST00000586108.1	chr17	73838573:73838694:73838937:73839004:73839094:73839154,	73838938	73839004	73838991	73838992	Frame_Shift_Ins	-	A	p.C112fs
UCEC	TCGA-D1-A17H-01	ROCK1	ENST00000399799.2	chr18	18533538:18533746:18534743:18535005:18535127:18535206,	18534744	18535005	18534827	18534827	Frame_Shift_Del	G	-	p.P1257fs
UCEC	TCGA-D1-A17H-01	CD70	ENST00000423145.3	chr19	6583193:6583489:6586164:6586416:6590113:6590147,	6586165	6586416	6586380	6586380	Frame_Shift_Del	C	-	p.G78fs
UCEC	TCGA-D1-A17H-01	SPRED3	ENST00000587947.1	chr19	38880694:38880792:38880938:38881119:38882585:38882754,	38880939	38881119	38881005	38881005	Frame_Shift_Del	G	-	p.V21fs
UCEC	TCGA-D1-A17H-01	C21orf58	ENST00000417060.1,ENST00000491666.1,ENST00000291691.7	chr21	47731369:47731481:47734629:47734794:47735387:47735461,	47734630	47734794	47734699	47734699	Frame_Shift_Del	G	-	p.P180fs
UCEC	TCGA-D1-A17H-01	C21orf58	ENST00000397679.1,ENST00000397680.1,ENST00000397682.3,ENST00000397683.1	chr21	47731369:47731481:47734629:47734963:47735387:47735461,	47734630	47734963	47734699	47734699	Frame_Shift_Del	G	-	p.P180fs
UCEC	TCGA-D1-A17H-01	SMARCB1	ENST00000407082.3,ENST00000263121.7	chr22	24129197:24129449:24133942:24134081:24135745:24135875,	24133943	24134081	24134056	24134057	Frame_Shift_Ins	-	A	p.D69_splice
UCEC	TCGA-D1-A17H-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1,ENST00000400866.2	chrX	76872080:76872198:76874273:76874449:76875862:76876000,	76874274	76874449	76874316	76874316	Frame_Shift_Del	T	-	p.K1802fs
UCEC	TCGA-D1-A17K-01	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324229	158324230	Frame_Shift_Ins	-	A	p.Q41fs
UCEC	TCGA-D1-A17K-01	NAA15	ENST00000296543.5	chr4	140297530:140297627:140299909:140300008:140305985:140306132,	140299910	140300008	140300008	140300008	Frame_Shift_Del	G	-	p.A719_splice
UCEC	TCGA-D1-A17L-01	RAB4A	ENST00000366690.4	chr1	229406940:229407117:229422232:229422313:229424475:229424590,	229422233	229422313	229422305	229422305	Frame_Shift_Del	A	-	p.E35fs
UCEC	TCGA-D1-A17L-01	RBM39	ENST00000403542.2,ENST00000253363.6,ENST00000429968.1,ENST00000495293.1,ENST00000448303.1,ENST00000463004.1,ENST00000492779.1,ENST00000528062.3,ENST00000407261.4	chr20	34295041:34295123:34297145:34297196:34300940:34301018,	34297146	34297196	34297181	34297182	Frame_Shift_Ins	-	T	p.I397fs
UCEC	TCGA-D1-A17L-01	RBM39	ENST00000476806.1	chr20	34295041:34295123:34297145:34297231:34300940:34301018,	34297146	34297231	34297181	34297182	Frame_Shift_Ins	-	T	p.I397fs
UCEC	TCGA-D1-A17M-01	UBR4	ENST00000375254.3,ENST00000375267.2	chr1	19465576:19465714:19467840:19468018:19468140:19468268,19467281:19467386:19467840:19468018:19468140:19468271,	19467841	19468018	19467923	19467923	Frame_Shift_Del	G	-	p.P2802fs
UCEC	TCGA-D1-A17M-01	MYOM3	ENST00000330966.7,ENST00000374434.3,ENST00000329601.7	chr1	24400649:24400759:24401808:24401965:24402648:24402763,	24401809	24401965	24401892	24401892	Frame_Shift_Del	G	-	p.P925fs
UCEC	TCGA-D1-A17M-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097751	27097751	Frame_Shift_Del	C	-	p.P1114fs
UCEC	TCGA-D1-A17M-01	AGL	ENST00000361915.3,ENST00000370161.2,ENST00000361522.4,ENST00000370165.3,ENST00000361302.3,ENST00000370163.3,ENST00000294724.4	chr1	100327812:100327979:100329941:100330145:100335955:100336137,	100329942	100330145	100330086	100330086	Frame_Shift_Del	A	-	p.E202fs
UCEC	TCGA-D1-A17M-01	IGSF9	ENST00000476102.1,ENST00000361509.3,ENST00000368094.1	chr1	159907475:159907628:159912752:159912941:159913186:159913418,	159912753	159912941	159912846	159912846	Frame_Shift_Del	G	-	p.L52fs
UCEC	TCGA-D1-A17M-01	BCL11A	ENST00000538214.1	chr2	60679711:60679801:60687664:60689559:60773105:60773315,	60687665	60689559	60689254	60689254	Frame_Shift_Del	G	-	p.L265fs
UCEC	TCGA-D1-A17M-01	BCL11A	ENST00000356842.4	chr2	60679711:60679801:60687816:60689559:60695866:60695968,	60687817	60689559	60689254	60689254	Frame_Shift_Del	G	-	p.L265fs
UCEC	TCGA-D1-A17M-01	USP13	ENST00000263966.3,ENST00000482333.1,ENST00000496897.1	chr3	179399665:179399791:179408028:179408089:179418795:179418917,	179408029	179408089	179408081	179408081	Frame_Shift_Del	T	-	p.I116fs
UCEC	TCGA-D1-A17M-01	BST1	ENST00000265016.4,ENST00000514989.1,ENST00000505785.1,ENST00000514445.1,ENST00000382346.3	chr4	15716950:15716984:15717329:15717422:15720529:15720616,	15717330	15717422	15717330	15717330	Frame_Shift_Del	T	-	p.G204_splice
UCEC	TCGA-D1-A17M-01	NDUFS6	ENST00000274137.5	chr5	1802434:1802488:1814452:1814575:1815964:1816719,	1814453	1814575	1814537	1814537	Frame_Shift_Del	G	-	p.G91fs
UCEC	TCGA-D1-A17M-01	NIPBL	ENST00000504430.1,ENST00000282516.8,ENST00000448238.2	chr5	36975877:36976504:36984777:36986403:36995723:36995906,	36984778	36986403	36985083	36985083	Frame_Shift_Del	A	-	p.K601fs
UCEC	TCGA-D1-A17M-01	PARP8	ENST00000505697.2,ENST00000514342.2,ENST00000514067.2,ENST00000511363.2,ENST00000505554.1,ENST00000503750.2,ENST00000281631.5,ENST00000503561.3,ENST00000515166.1	chr5	50090040:50090166:50090686:50091251:50092815:50092866,	50090687	50091251	50091154	50091154	Frame_Shift_Del	T	-	p.L444fs
UCEC	TCGA-D1-A17M-01	LNPEP	ENST00000231368.5,ENST00000395770.3	chr5	96322242:96322374:96328718:96328839:96329520:96329675,	96328719	96328839	96328793	96328794	Frame_Shift_Ins	-	T	p.E402fs
UCEC	TCGA-D1-A17M-01	THEMIS	ENST00000368250.1,ENST00000368248.2,ENST00000537166.1,ENST00000543064.1	chr6	128134721:128135076:128150620:128151079:128176174:128176288,	128150621	128151079	128151072	128151072	Frame_Shift_Del	A	-	p.F86fs
UCEC	TCGA-D1-A17M-01	SEMA3E	ENST00000427262.1,ENST00000307792.3	chr7	83031947:83032092:83034765:83034835:83035260:83035375,	83034766	83034835	83034823	83034823	Frame_Shift_Del	A	-	p.L314fs
UCEC	TCGA-D1-A17M-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K105fs
UCEC	TCGA-D1-A17M-01	TUSC3	ENST00000510836.1	chr8	15531271:15531345:15601046:15601121:15605883:15605974,15531271:15531345:15601046:15601121:15621711:15621927,	15601047	15601121	15601063	15601063	Frame_Shift_Del	G	-	p.M293fs
UCEC	TCGA-D1-A17M-01	TUSC3	ENST00000508446.1	chr8	15531271:15531345:15600954:15601121:15621711:15621927,	15600955	15601121	15601063	15601063	Frame_Shift_Del	G	-	p.M293fs
UCEC	TCGA-D1-A17M-01	ATP6V1H	ENST00000524164.1,ENST00000396774.2,ENST00000520188.1,ENST00000359530.2,ENST00000355221.3	chr8	54684548:54684727:54708206:54708399:54714358:54714428,	54708207	54708399	54708340	54708341	Frame_Shift_Ins	-	A	p.S246fs
UCEC	TCGA-D1-A17M-01	ABCA1	ENST00000374736.3	chr9	107543282:107546736:107547676:107547920:107548578:107548671,	107547677	107547920	107547790	107547790	Frame_Shift_Del	A	-	p.Y2178fs
UCEC	TCGA-D1-A17M-01	STK32C	ENST00000368622.1,ENST00000462160.1,ENST00000298630.3,ENST00000368625.4	chr10	134037910:134038027:134038736:134038840:134039030:134039120,	134038737	134038840	134038818	134038819	Frame_Shift_Del	AA	-	p.F278fs
UCEC	TCGA-D1-A17M-01	PPFIA1	ENST00000526262.1,ENST00000389547.3,ENST00000532443.1,ENST00000530798.1,ENST00000532504.1,ENST00000253925.7	chr11	70181718:70181800:70183470:70183533:70184479:70184540,	70183471	70183533	70183499	70183500	Frame_Shift_Ins	-	A	p.A486fs
UCEC	TCGA-D1-A17M-01	PPFIA1	ENST00000527612.1,ENST00000528750.1,ENST00000526262.1,ENST00000389547.3,ENST00000532504.1,ENST00000253925.7,ENST00000530390.1	chr11	70201744:70201917:70202266:70202360:70208200:70208281,	70202267	70202360	70202354	70202354	Frame_Shift_Del	A	-	p.Q859fs
UCEC	TCGA-D1-A17M-01	CASP5	ENST00000444749.2,ENST00000526056.1,ENST00000260315.3,ENST00000393141.2	chr11	104872754:104872928:104874000:104874110:104893856:104893863,104872754:104872928:104874000:104874110:104877809:104878058,	104874001	104874110	104874011	104874011	Frame_Shift_Del	T	-	p.N191fs
UCEC	TCGA-D1-A17M-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57920093:57920171:57920348:57921010:57921289:57921443,	57920349	57921010	57920933	57920934	Frame_Shift_Ins	-	C	p.A669fs
UCEC	TCGA-D1-A17M-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.K149fs
UCEC	TCGA-D1-A17M-01	CCDC60	ENST00000327554.2	chr12	119926563:119926671:119937882:119937973:119942873:119943108,	119937883	119937973	119937911	119937911	Frame_Shift_Del	A	-	p.K196fs
UCEC	TCGA-D1-A17M-01	MAPKBP1	ENST00000456763.2,ENST00000512970.1,ENST00000502292.1,ENST00000505061.1,ENST00000457542.2,ENST00000510535.1,ENST00000507762.1,ENST00000514566.1,ENST00000221214.6	chr15	42067532:42067587:42092020:42092112:42103080:42103143,	42092021	42092112	42092080	42092080	Frame_Shift_Del	C	-	p.D58fs
UCEC	TCGA-D1-A17M-01	ATXN2L	ENST00000325215.6,ENST00000564304.1,ENST00000382686.4,ENST00000395547.2,ENST00000336783.4,ENST00000340394.8,ENST00000568266.1,ENST00000563314.1,ENST00000570200.1	chr16	28837560:28837711:28838182:28838307:28840721:28840813,	28838183	28838307	28838262	28838262	Frame_Shift_Del	G	-	p.E232fs
UCEC	TCGA-D1-A17M-01	MVP	ENST00000570234.1,ENST00000563915.1,ENST00000357402.5,ENST00000395353.1	chr16	29841835:29841995:29842198:29842394:29845053:29845071,	29842199	29842394	29842232	29842232	Frame_Shift_Del	C	-	p.V53fs
UCEC	TCGA-D1-A17M-01	ABCC11	ENST00000353782.5,ENST00000537808.1,ENST00000356608.2,ENST00000394747.1,ENST00000394748.1	chr16	48232051:48232186:48234186:48234390:48237138:48237211,	48234187	48234390	48234220	48234220	Frame_Shift_Del	C	-	p.G683fs
UCEC	TCGA-D1-A17M-01	APBA3	ENST00000588984.1,ENST00000316757.3,ENST00000590064.1	chr19	3751431:3751551:3752505:3752718:3752817:3752988,	3752506	3752718	3752611	3752611	Frame_Shift_Del	C	-	p.G430fs
UCEC	TCGA-D1-A17M-01	ENTPD6	ENST00000360031.2,ENST00000435520.1	chr20	25176474:25176503:25187714:25188033:25190484:25190561,25187157:25187226:25187714:25188033:25190484:25190561,	25187715	25188033	25188023	25188024	Frame_Shift_Ins	-	C	p.R122fs
UCEC	TCGA-D1-A17M-01	ENTPD6	ENST00000433259.2,ENST00000376652.4,ENST00000425813.1	chr20	25176474:25176503:25187711:25188033:25190484:25190561,25187157:25187226:25187711:25188033:25190484:25190561,	25187712	25188033	25188023	25188024	Frame_Shift_Ins	-	C	p.R122fs
UCEC	TCGA-D1-A17M-01	TCF20	ENST00000359486.3	chr22	42557103:42557364:42564614:42564742:42565852:42565902,	42564615	42564742	42564716	42564716	Frame_Shift_Del	G	-	p.P1942fs
UCEC	TCGA-D1-A17M-01	PHKA1	ENST00000339490.3,ENST00000373542.4,ENST00000541944.1,ENST00000373539.3,ENST00000373545.3	chrX	71800476:71801025:71802247:71802448:71804098:71804152,	71802248	71802448	71802285	71802286	Frame_Shift_Ins	-	T	p.I1154fs
UCEC	TCGA-D1-A17M-01	ATRX	ENST00000373344.5,ENST00000395603.3,ENST00000480283.1	chrX	76931720:76931793:76937011:76940085:76940430:76940498,	76937012	76940085	76938230	76938230	Frame_Shift_Del	T	-	p.R840fs
UCEC	TCGA-D1-A17M-01	DRP2	ENST00000402866.1,ENST00000395209.3,ENST00000541709.1,ENST00000538510.1	chrX	100509413:100509550:100509847:100509913:100510172:100510238,	100509848	100509913	100509879	100509880	Frame_Shift_Ins	-	AC	p.D716fs
UCEC	TCGA-D1-A17M-01	LUZP4	ENST00000371920.3	chrX	114536556:114536688:114537864:114537983:114540769:114542119,	114537865	114537983	114537909	114537909	Frame_Shift_Del	A	-	p.K90fs
UCEC	TCGA-D1-A17N-01	FAR2	ENST00000547116.1,ENST00000552137.1,ENST00000182377.4,ENST00000536681.3	chr12	29446232:29446408:29449953:29450133:29460590:29460768,	29449954	29450133	29450110	29450110	Frame_Shift_Del	A	-	p.P174fs
UCEC	TCGA-D1-A17R-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-D1-A17R-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155449753	155449753	Frame_Shift_Del	T	-	p.I970fs
UCEC	TCGA-D1-A17R-01	CRB1	ENST00000484075.1,ENST00000535699.1,ENST00000367399.2,ENST00000367400.3	chr1	197325960:197326143:197390129:197391086:197396583:197396842,	197390130	197391086	197390792	197390792	Frame_Shift_Del	T	-	p.F612fs
UCEC	TCGA-D1-A17R-01	MERTK	ENST00000409780.1,ENST00000439966.1,ENST00000295408.4,ENST00000421804.2	chr2	112765959:112766052:112767524:112767643:112776989:112777099,	112767525	112767643	112767604	112767607	Frame_Shift_Del	TACT	-	p.H680fs
UCEC	TCGA-D1-A17R-01	NOSTRIN	ENST00000397206.2,ENST00000447264.2,ENST00000317647.7,ENST00000445023.2,ENST00000421711.2,ENST00000397209.2	chr2	169690736:169690835:169699501:169699627:169707593:169707692,	169699502	169699627	169699563	169699563	Frame_Shift_Del	A	-	p.Q189fs
UCEC	TCGA-D1-A17R-01	CFI	ENST00000510800.1,ENST00000394634.2,ENST00000394635.3,ENST00000512148.1	chr4	110685692:110685846:110687709:110687980:110723070:110723134,	110687710	110687980	110687927	110687927	Frame_Shift_Del	T	-	p.K37fs
UCEC	TCGA-D1-A17R-01	CAST	ENST00000359176.4,ENST00000309190.5,ENST00000508117.2,ENST00000338252.3,ENST00000505143.1,ENST00000325674.7,ENST00000511097.2,ENST00000508608.1,ENST00000510156.1,ENST00000348386.3,ENST00000508830.1,ENST00000511782.1,ENST00000341926.3,ENST00000395813.1,ENST00000395812.2,ENST00000511049.1,ENST00000510756.1,ENST00000421689.2,ENST00000509903.1	chr5	96065315:96065429:96066483:96066564:96071875:96071891,	96066484	96066564	96066515	96066516	Frame_Shift_Del	GA	-	p.G157fs
UCEC	TCGA-D1-A17R-01	RNF216	ENST00000425013.2,ENST00000389902.3,ENST00000389900.4	chr7	5760663:5760803:5764954:5765069:5769062:5769227,	5764955	5765069	5765046	5765046	Frame_Shift_Del	T	-	p.K471fs
UCEC	TCGA-D1-A17R-01	DNAJC2	ENST00000475065.1,ENST00000249270.7,ENST00000454277.1,ENST00000379263.3,ENST00000379257.3	chr7	102964044:102964110:102964928:102965009:102966989:102967131,	102964929	102965009	102964992	102964992	Frame_Shift_Del	T	-	p.N197fs
UCEC	TCGA-D1-A17R-01	SNX31	ENST00000428383.2,ENST00000311812.2	chr8	101585892:101586188:101589246:101589303:101596338:101596388,	101589247	101589303	101589268	101589268	Frame_Shift_Del	T	-	p.K402fs
UCEC	TCGA-D1-A17R-01	SMC2	ENST00000374793.3,ENST00000303219.8,ENST00000374787.3,ENST00000286398.7	chr9	106876971:106877110:106878480:106878600:106880451:106880656,	106878481	106878600	106878506	106878506	Frame_Shift_Del	G	-	p.R566fs
UCEC	TCGA-D1-A17R-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
UCEC	TCGA-D1-A17R-01	DNA2	ENST00000399179.2,ENST00000399180.2,ENST00000551118.2,ENST00000358410.3	chr10	70209784:70210004:70218860:70218992:70225423:70225569,	70218861	70218992	70218861	70218862	Frame_Shift_Del	AG	-	p.L326_splice
UCEC	TCGA-D1-A17R-01	GANAB	ENST00000529737.1	chr11	62406830:62406939:62407102:62407203:62414033:62414074,	62407103	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
UCEC	TCGA-D1-A17R-01	GANAB	ENST00000346178.4,ENST00000356638.3	chr11	62406830:62406939:62407098:62407203:62414033:62414074,	62407099	62407203	62407174	62407174	Frame_Shift_Del	A	-	p.L23fs
UCEC	TCGA-D1-A17R-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14577801	14577802	Frame_Shift_Ins	-	A	p.E318fs
UCEC	TCGA-D1-A17R-01	DHRS7	ENST00000557751.1,ENST00000216500.5,ENST00000536410.2,ENST00000554101.1,ENST00000557185.1	chr14	60616176:60616286:60616782:60616905:60619656:60619892,	60616783	60616905	60616897	60616897	Frame_Shift_Del	A	-	p.F214fs
UCEC	TCGA-D1-A17R-01	ZNF506	ENST00000591639.1,ENST00000443905.2	chr19	19903269:19903293:19904642:19906469:19916839:19916935,	19904643	19906469	19906351	19906351	Frame_Shift_Del	T	-	p.K115fs
UCEC	TCGA-D1-A17S-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711966	89711967	Frame_Shift_Ins	-	TC	p.F195fs
UCEC	TCGA-D1-A17U-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-D1-A17U-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097622	27097622	Frame_Shift_Del	A	-	p.K1071fs
UCEC	TCGA-D1-A17U-01	PIK3R3	ENST00000262741.5,ENST00000540385.1,ENST00000372006.1,ENST00000420542.1	chr1	46512222:46512297:46521466:46521643:46527600:46527743,	46521467	46521643	46521525	46521525	Frame_Shift_Del	T	-	p.M341fs
UCEC	TCGA-D1-A17U-01	IPO9	ENST00000361565.4	chr1	201824251:201824310:201824910:201825062:201826223:201826322,	201824911	201825062	201824988	201824988	Frame_Shift_Del	A	-	p.K350fs
UCEC	TCGA-D1-A17U-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315787	208315787	Frame_Shift_Del	G	-	p.H465fs
UCEC	TCGA-D1-A17U-01	SLC6A6	ENST00000458124.1,ENST00000427436.1	chr3	14509360:14509464:14513712:14513825:14518712:14518850,	14513713	14513825	14513785	14513785	Frame_Shift_Del	T	-	p.L390fs
UCEC	TCGA-D1-A17U-01	AP3B1	ENST00000519295.1,ENST00000255194.6	chr5	77330184:77330269:77334866:77335098:77385216:77385323,	77334867	77335098	77334907	77334907	Frame_Shift_Del	T	-	p.K923fs
UCEC	TCGA-D1-A17U-01	NSD1	ENST00000347982.4,ENST00000361032.4,ENST00000439151.2,ENST00000354179.4	chr5	176673678:176673797:176675181:176675325:176678730:176678854,	176675182	176675325	176675214	176675214	Frame_Shift_Del	C	-	p.S1510fs
UCEC	TCGA-D1-A17U-01	RMND5B	ENST00000507575.1	chr5	177558237:177558377:177565108:177565259:177569583:177569614,177562173:177562313:177565108:177565259:177569583:177569614,177558035:177558055:177565108:177565259:177569583:177569614,	177565109	177565259	177565142	177565143	Frame_Shift_Del	GA	-	p.E8fs
UCEC	TCGA-D1-A17U-01	RMND5B	ENST00000512663.1	chr5	177558237:177558377:177565108:177565397:177569583:177569614,	177565109	177565397	177565142	177565143	Frame_Shift_Del	GA	-	p.E8fs
UCEC	TCGA-D1-A17U-01	SYNJ2	ENST00000367121.3,ENST00000367112.1,ENST00000355585.4	chr6	158505032:158505206:158507886:158508021:158509691:158509804,	158507887	158508021	158508008	158508009	Frame_Shift_Ins	-	C	p.R1110fs
UCEC	TCGA-D1-A17U-01	QKI	ENST00000544823.1,ENST00000544436.1,ENST00000453779.2,ENST00000392127.2,ENST00000537041.1,ENST00000361758.4,ENST00000275262.7,ENST00000361752.3,ENST00000361195.2,ENST00000424802.3	chr6	163836269:163836367:163899811:163899928:163956013:163956016,163876362:163876453:163899811:163899928:163956013:163956016,	163899812	163899928	163899920	163899920	Frame_Shift_Del	A	-	p.K132fs
UCEC	TCGA-D1-A17U-01	EPDR1	ENST00000199448.4,ENST00000559325.1	chr7	37960921:37961053:37988441:37988650:37989801:37989888,37960259:37960810:37988441:37988650:37989801:37989888,	37988442	37988650	37988589	37988589	Frame_Shift_Del	C	-	p.I259fs
UCEC	TCGA-D1-A17U-01	STAU2	ENST00000521727.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521447.1	chr8	74529526:74529686:74585341:74585477:74600888:74601048,	74585342	74585477	74585345	74585348	Frame_Shift_Del	TGAT	-	p.N135fs
UCEC	TCGA-D1-A17U-01	RGS22	ENST00000523437.1,ENST00000523287.1,ENST00000517769.1,ENST00000360863.6	chr8	100977562:100977658:100990144:100990303:100994164:100994344,	100990145	100990303	100990178	100990178	Frame_Shift_Del	T	-	p.K1162fs
UCEC	TCGA-D1-A17U-01	SVIL	ENST00000375400.3,ENST00000535393.1,ENST00000375398.2,ENST00000355867.4	chr10	29759204:29759412:29760066:29760172:29762766:29762918,	29760067	29760172	29760116	29760116	Frame_Shift_Del	C	-	p.G1862fs
UCEC	TCGA-D1-A17U-01	DLG5	ENST00000475613.2,ENST00000372388.2,ENST00000424842.1,ENST00000372391.2,ENST00000463362.1,ENST00000459739.1	chr10	79556208:79556352:79565422:79565619:79566515:79566686,	79565423	79565619	79565520	79565520	Frame_Shift_Del	A	-	p.F1689fs
UCEC	TCGA-D1-A17U-01	NFKB2	ENST00000189444.6,ENST00000428099.1,ENST00000336486.5,ENST00000467116.1,ENST00000369966.3	chr10	104157968:104158054:104158141:104158280:104158495:104158621,	104158142	104158280	104158163	104158163	Frame_Shift_Del	C	-	p.P292fs
UCEC	TCGA-D1-A17U-01	NUP160	ENST00000530326.1,ENST00000378460.2	chr11	47861497:47861617:47861929:47862140:47869399:47869511,	47861930	47862140	47861981	47861982	Frame_Shift_Ins	-	T	p.N158fs
UCEC	TCGA-D1-A17U-01	MBD6	ENST00000355673.3,ENST00000431731.2,ENST00000547545.1	chr12	57920425:57921010:57921289:57921443:57921630:57921800,	57921290	57921443	57921401	57921401	Frame_Shift_Del	C	-	p.P732fs
UCEC	TCGA-D1-A17U-01	CEP290	ENST00000397838.3,ENST00000547691.2,ENST00000309041.7,ENST00000552810.1	chr12	88452624:88452797:88453674:88453797:88454606:88454771,	88453675	88453797	88453675	88453675	Frame_Shift_Del	T	-	p.K2215_splice
UCEC	TCGA-D1-A17U-01	NCOR2	ENST00000356219.3	chr12	124846671:124846843:124848224:124848345:124856567:124857156,124846671:124846840:124848224:124848345:124856567:124857156,	124848225	124848345	124848228	124848228	Frame_Shift_Del	G	-	p.P975fs
UCEC	TCGA-D1-A17U-01	YLPM1	ENST00000238571.3,ENST00000549293.1,ENST00000325680.7	chr14	75248625:75249028:75264282:75266400:75269258:75269379,	75264283	75266400	75265533	75265533	Frame_Shift_Del	A	-	p.E1178fs
UCEC	TCGA-D1-A17U-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021239	23021239	Frame_Shift_Del	T	-	p.K33fs
UCEC	TCGA-D1-A17U-01	ATXN2L	ENST00000340394.8	chr16	28846989:28847079:28847253:28847443:28848048:28848240,	28847254	28847443	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-D1-A17U-01	ATXN2L	ENST00000564304.1,ENST00000570200.1	chr16	28846989:28847079:28847253:28847497:28848048:28848240,	28847254	28847497	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-D1-A17U-01	ATXN2L	ENST00000562583.1	chr16	28846989:28847079:28847253:28847806:28848048:28848240,	28847254	28847806	28847350	28847350	Frame_Shift_Del	G	-	p.G998fs
UCEC	TCGA-D1-A17U-01	SLC12A4	ENST00000541864.2,ENST00000537830.2,ENST00000572037.1,ENST00000573023.2,ENST00000338335.3,ENST00000316341.3,ENST00000576616.1,ENST00000570802.1,ENST00000422611.2	chr16	67985725:67985940:67986086:67986328:67988545:67988676,	67986087	67986328	67986298	67986298	Frame_Shift_Del	A	-	p.Y238fs
UCEC	TCGA-D1-A17U-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72829045	72829046	Frame_Shift_Ins	-	A	p.L2512fs
UCEC	TCGA-D1-A17U-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579471	7579471	Frame_Shift_Del	G	-	p.P72fs
UCEC	TCGA-D1-A17U-01	DNAJC7	ENST00000588814.1,ENST00000316603.7,ENST00000426588.3,ENST00000457167.4,ENST00000586335.1	chr17	40134001:40134025:40134272:40134419:40135580:40135654,	40134273	40134419	40134398	40134398	Frame_Shift_Del	T	-	p.N369fs
UCEC	TCGA-D1-A17U-01	KCNH4	ENST00000264661.3,ENST00000607371.1	chr17	40327596:40327754:40328071:40328315:40330117:40330245,	40328072	40328315	40328259	40328259	Frame_Shift_Del	C	-	p.G214fs
UCEC	TCGA-D1-A17U-01	BRCA1	ENST00000493795.1,ENST00000346315.3,ENST00000309486.4,ENST00000354071.3,ENST00000461221.1,ENST00000357654.3,ENST00000471181.2	chr17	41242960:41243049:41243451:41246877:41247862:41247883,	41243452	41246877	41245587	41245587	Frame_Shift_Del	T	-	p.K654fs
UCEC	TCGA-D1-A17U-01	TMC6	ENST00000322914.3,ENST00000593044.1,ENST00000392467.3,ENST00000590602.1	chr17	76115377:76115473:76116733:76116913:76117093:76117245,	76116734	76116913	76116751	76116751	Frame_Shift_Del	A	-	p.F566fs
UCEC	TCGA-D1-A17U-01	P4HB	ENST00000439918.2,ENST00000575069.1,ENST00000476482.1,ENST00000331483.4,ENST00000415593.1	chr17	79803535:79803618:79803746:79803867:79804304:79804383,	79803747	79803867	79803764	79803764	Frame_Shift_Del	T	-	p.N387fs
UCEC	TCGA-D1-A17U-01	SCAF4	ENST00000434667.3,ENST00000399804.1,ENST00000286835.7	chr21	33068881:33069063:33073307:33073484:33074088:33074136,	33073308	33073484	33073336	33073336	Frame_Shift_Del	G	-	p.P250fs
UCEC	TCGA-D1-A17U-01	EIF4ENIF1	ENST00000397525.1,ENST00000344710.5,ENST00000397520.1,ENST00000397518.1,ENST00000397523.1,ENST00000423097.1,ENST00000330125.5	chr22	31864267:31864288:31867829:31867903:31884608:31884731,	31867830	31867903	31867837	31867838	Frame_Shift_Ins	-	T	p.K54fs
UCEC	TCGA-D1-A17U-01	ADSL	ENST00000216194.7,ENST00000454266.2	chr22	40760279:40760369:40760883:40761060:40762439:40762502,	40760884	40761060	40760944	40760944	Frame_Shift_Del	G	-	p.G418fs
UCEC	TCGA-D1-A17U-01	PNPLA4	ENST00000442940.1	chrX	7890044:7890139:7893980:7894173:7895726:7895780,7890044:7890139:7893980:7894173:7895711:7895780,	7893981	7894173	7893985	7893986	Frame_Shift_Ins	-	T	p.I59fs
UCEC	TCGA-D1-A17U-01	ZDHHC15	ENST00000373367.3,ENST00000541184.1	chrX	74641698:74641825:74644486:74644619:74648912:74649033,	74644487	74644619	74644551	74644551	Frame_Shift_Del	A	-	p.F224fs
UCEC	TCGA-D1-A1NU-01	CRYZ	ENST00000370871.3,ENST00000340866.5	chr1	75188801:75188954:75190394:75190518:75198639:75198702,	75190395	75190518	75190458	75190458	Frame_Shift_Del	A	-	p.F16fs
UCEC	TCGA-DI-A0WH-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12052611:12052747:12056212:12056375:12057353:12057478,	12056213	12056375	12056351	12056351	Frame_Shift_Del	C	-	p.G150fs
UCEC	TCGA-DI-A0WH-01	AHDC1	ENST00000374011.2,ENST00000247087.5	chr1	27860813:27861427:27873771:27878700:27879402:27879440,	27873772	27878700	27876869	27876869	Frame_Shift_Del	T	-	p.K586fs
UCEC	TCGA-DI-A0WH-01	RPAP2	ENST00000610020.1,ENST00000484158.1	chr1	92769840:92769906:92772744:92772833:92786155:92786191,	92772745	92772833	92772747	92772747	Frame_Shift_Del	T	-	p.S134fs
UCEC	TCGA-DI-A0WH-01	BCAN	ENST00000329117.5	chr1	156622606:156622684:156626073:156626181:156626729:156626832,	156626074	156626181	156626160	156626160	Frame_Shift_Del	G	-	p.G677fs
UCEC	TCGA-DI-A0WH-01	PRG4	ENST00000367485.4	chr1	186270723:186270843:186275449:186278272:186278924:186279002,	186275450	186278272	186277962	186277962	Frame_Shift_Del	A	-	p.P1037fs
UCEC	TCGA-DI-A0WH-01	OBSCN	ENST00000570156.2,ENST00000483539.1,ENST00000366707.4,ENST00000359599.6	chr1	228481895:228482116:228482480:228482744:228486154:228486168,	228482481	228482744	228482698	228482699	Frame_Shift_Del	GT	-	p.S3871fs
UCEC	TCGA-DI-A0WH-01	ING5	ENST00000492488.1,ENST00000482774.1,ENST00000406941.1,ENST00000313552.6,ENST00000489509.1	chr2	242648630:242648797:242650791:242650903:242651392:242651486,	242650792	242650903	242650899	242650899	Frame_Shift_Del	A	-	p.L128fs
UCEC	TCGA-DI-A0WH-01	ARL8B	ENST00000256496.3,ENST00000455168.1	chr3	5214331:5214425:5215701:5215769:5216028:5216099,	5215702	5215769	5215762	5215763	Frame_Shift_Ins	-	A	p.E145fs
UCEC	TCGA-DI-A0WH-01	KCNH8	ENST00000328405.2	chr3	19491597:19491797:19492646:19492896:19498259:19498474,	19492647	19492896	19492723	19492723	Frame_Shift_Del	T	-	p.L551fs
UCEC	TCGA-DI-A0WH-01	ARIH2	ENST00000484999.1	chr3	48960197:48960244:48964894:48965246:48999044:48999071,48962150:48962272:48964894:48965246:48982568:48982614,48962150:48962272:48964894:48965246:48999044:48999071,48960197:48960244:48964894:48965246:48982568:48982614,	48964895	48965246	48965061	48965062	Frame_Shift_Ins	-	A	p.E24fs
UCEC	TCGA-DI-A0WH-01	ARIH2	ENST00000484999.1	chr3	48960197:48960244:48964894:48965246:48999044:48999071,48962150:48962272:48964894:48965246:48982568:48982614,48962150:48962272:48964894:48965246:48999044:48999071,48960197:48960244:48964894:48965246:48982568:48982614,	48964895	48965246	48965063	48965064	Frame_Shift_Ins	-	AA	p.E24fs
UCEC	TCGA-DI-A0WH-01	CACNA1D	ENST00000350061.5,ENST00000422281.2,ENST00000288139.4,ENST00000481478.1	chr3	53766042:53766109:53766841:53766989:53769400:53769530,	53766842	53766989	53766932	53766932	Frame_Shift_Del	A	-	p.E855fs
UCEC	TCGA-DI-A0WH-01	ATR	ENST00000350721.4,ENST00000383101.3,ENST00000507620.1	chr3	142215975:142216034:142217438:142217616:142218468:142218560,	142217439	142217616	142217557	142217557	Frame_Shift_Del	T	-	p.R1814fs
UCEC	TCGA-DI-A0WH-01	TMPRSS11D	ENST00000505533.1,ENST00000283916.6,ENST00000545541.1	chr4	68691524:68691592:68692978:68693238:68698921:68699099,	68692979	68693238	68692996	68692996	Frame_Shift_Del	C	-	p.G312fs
UCEC	TCGA-DI-A0WH-01	SPARCL1	ENST00000541496.1	chr4	88416164:88416279:88420672:88420737:88450196:88450244,88416132:88416295:88420672:88420737:88450196:88450244,	88420673	88420737	88420707	88420707	Frame_Shift_Del	A	-	p.F7fs
UCEC	TCGA-DI-A0WH-01	TMA16	ENST00000508268.1,ENST00000513134.1,ENST00000358572.5,ENST00000513272.1	chr4	164415859:164415956:164428184:164428297:164433973:164434011,	164428185	164428297	164428216	164428216	Frame_Shift_Del	G	-	p.R12fs
UCEC	TCGA-DI-A0WH-01	SV2C	ENST00000502798.2,ENST00000322285.7	chr5	75591602:75591767:75594618:75594752:75596553:75596757,	75594619	75594752	75594663	75594663	Frame_Shift_Del	T	-	p.V516fs
UCEC	TCGA-DI-A0WH-01	RNF14	ENST00000515613.1	chr5	141357867:141358395:141359687:141359916:141362944:141363117,141354368:141354520:141359687:141359916:141362944:141363117,141353147:141353307:141359687:141359916:141362944:141363117,	141359688	141359916	141359780	141359780	Frame_Shift_Del	C	-	p.C309fs
UCEC	TCGA-DI-A0WH-01	FGF1	ENST00000337706.2	chr5	141980364:141980370:141993523:141993726:142077186:142077280,141980364:141980370:141993523:141993726:142065521:142065616,	141993524	141993726	141993589	141993589	Frame_Shift_Del	C	-	p.G35fs
UCEC	TCGA-DI-A0WH-01	EFHC1	ENST00000480623.1,ENST00000433625.2,ENST00000371068.5,ENST00000538167.1	chr6	52329692:52329913:52334130:52334271:52343834:52344048,	52334131	52334271	52334208	52334208	Frame_Shift_Del	A	-	p.P405fs
UCEC	TCGA-DI-A0WH-01	ETV1	ENST00000472931.2,ENST00000405218.2,ENST00000443137.1,ENST00000403685.1,ENST00000497115.1,ENST00000405358.4,ENST00000405192.2,ENST00000420159.2,ENST00000430479.1,ENST00000242066.5,ENST00000403527.1,ENST00000476720.2,ENST00000438956.1,ENST00000343495.5	chr7	13971266:13971374:13975332:13975521:13978741:13978871,	13975333	13975521	13975473	13975473	Frame_Shift_Del	G	-	p.P138fs
UCEC	TCGA-DI-A0WH-01	PLOD3	ENST00000421736.1	chr7	100855533:100855655:100856122:100856224:100856387:100856485,	100856123	100856224	100856126	100856126	Frame_Shift_Del	C	-	p.G292fs
UCEC	TCGA-DI-A0WH-01	STMN4	ENST00000265770.7,ENST00000350889.4	chr8	27093991:27094422:27097487:27097679:27098570:27098776,	27097488	27097679	27097623	27097624	Frame_Shift_Del	CT	-	p.E152fs
UCEC	TCGA-DI-A0WH-01	NUP214	ENST00000483497.2,ENST00000451030.1,ENST00000359428.5,ENST00000453861.2,ENST00000411637.2	chr9	134090598:134090755:134098164:134098317:134103546:134103615,	134098165	134098317	134098226	134098227	Frame_Shift_Ins	-	T	p.S1937fs
UCEC	TCGA-DI-A0WH-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61829142	61829143	Frame_Shift_Del	CT	-	p.T3832fs
UCEC	TCGA-DI-A0WH-01	FAM168A	ENST00000356467.4,ENST00000064778.4	chr11	73120531:73120706:73122438:73122581:73130918:73131044,	73122439	73122581	73122520	73122520	Frame_Shift_Del	G	-	p.P122fs
UCEC	TCGA-DI-A0WH-01	RAD52	ENST00000468231.1,ENST00000488642.2,ENST00000461568.1,ENST00000545967.1	chr12	1036388:1036429:1038929:1039052:1039216:1039310,	1038930	1039052	1039020	1039020	Frame_Shift_Del	C	-	p.V105fs
UCEC	TCGA-DI-A0WH-01	RAD52	ENST00000430095.2,ENST00000358495.3,ENST00000542785.1,ENST00000545564.1,ENST00000536177.1,ENST00000542584.1,ENST00000539046.1	chr12	1036388:1036429:1038984:1039052:1039216:1039310,	1038985	1039052	1039020	1039020	Frame_Shift_Del	C	-	p.V105fs
UCEC	TCGA-DI-A0WH-01	PLEKHA5	ENST00000317589.4,ENST00000355397.3,ENST00000359180.3,ENST00000538972.1,ENST00000539256.1,ENST00000429027.2,ENST00000424268.1,ENST00000299275.6,ENST00000538714.1,ENST00000543806.1	chr12	19512345:19512480:19514515:19514640:19518897:19519043,	19514516	19514640	19514518	19514518	Frame_Shift_Del	A	-	p.L996fs
UCEC	TCGA-DI-A0WH-01	LRIG3	ENST00000379141.4,ENST00000433272.2,ENST00000320743.3	chr12	59277301:59277373:59279612:59279684:59280591:59280672,	59279613	59279684	59279645	59279645	Frame_Shift_Del	T	-	p.K404fs
UCEC	TCGA-DI-A0WH-01	CCDC38	ENST00000344280.3	chr12	96292162:96292243:96292345:96292509:96300164:96300229,	96292346	96292509	96292432	96292432	Frame_Shift_Del	T	-	p.K149fs
UCEC	TCGA-DI-A0WH-01	SCARB1	ENST00000546215.1,ENST00000415380.2,ENST00000538291.1,ENST00000544327.1,ENST00000535005.1,ENST00000540495.1,ENST00000261693.6,ENST00000339570.5,ENST00000376788.1,ENST00000541205.1	chr12	125294719:125294835:125296415:125296511:125298747:125298951,	125296416	125296511	125296469	125296469	Frame_Shift_Del	C	-	p.V225fs
UCEC	TCGA-DI-A0WH-01	SLC12A1	ENST00000558405.1,ENST00000558252.1,ENST00000560692.1,ENST00000380993.3,ENST00000396577.3	chr15	48566767:48566850:48577302:48577446:48580239:48580371,	48577303	48577446	48577440	48577440	Frame_Shift_Del	A	-	p.K875fs
UCEC	TCGA-DI-A0WH-01	ZFPM1	ENST00000562437.1,ENST00000319555.3,ENST00000569086.1	chr16	88552346:88552451:88555438:88555561:88580794:88580928,	88555439	88555561	88555465	88555465	Frame_Shift_Del	C	-	p.P58fs
UCEC	TCGA-DI-A0WH-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000582678.1	chr17	61559826:61560050:61560389:61560534:61560820:61560919,	61560390	61560534	61560494	61560494	Frame_Shift_Del	A	-	p.T483fs
UCEC	TCGA-DI-A0WH-01	ACE	ENST00000290866.4,ENST00000428043.1,ENST00000582678.1	chr17	61559826:61560050:61560389:61560534:61560820:61560919,	61560390	61560534	61560495	61560495	Frame_Shift_Del	C	-	p.T483fs
UCEC	TCGA-DI-A0WH-01	ABCA6	ENST00000284425.2	chr17	67124759:67124945:67125750:67125892:67129781:67130008,	67125751	67125892	67125767	67125767	Frame_Shift_Del	A	-	p.L306fs
UCEC	TCGA-DI-A0WH-01	CCDC137	ENST00000571916.1	chr17	79634798:79634892:79637259:79637483:79638773:79638856,	79637260	79637483	79637475	79637475	Frame_Shift_Del	A	-	p.A163fs
UCEC	TCGA-DI-A0WH-01	CCDC137	ENST00000575223.1,ENST00000329214.8	chr17	79634798:79634892:79637254:79637483:79638773:79638856,	79637255	79637483	79637475	79637475	Frame_Shift_Del	A	-	p.A163fs
UCEC	TCGA-DI-A0WH-01	ESCO1	ENST00000269214.5,ENST00000383276.1	chr18	19147940:19148055:19153274:19155391:19155632:19155738,	19153275	19155391	19153837	19153837	Frame_Shift_Del	T	-	p.K323fs
UCEC	TCGA-DI-A0WH-01	QPCTL	ENST00000591606.1	chr19	46196670:46196814:46198890:46198976:46201804:46201957,	46198891	46198976	46198968	46198968	Frame_Shift_Del	A	-	p.K209fs
UCEC	TCGA-DI-A0WH-01	QPCTL	ENST00000012049.5	chr19	46196670:46196814:46198694:46198976:46201804:46201957,	46198695	46198976	46198968	46198968	Frame_Shift_Del	A	-	p.K209fs
UCEC	TCGA-DI-A0WH-01	ZNF541	ENST00000314121.4,ENST00000448976.1	chr19	48047382:48049237:48052501:48052742:48058806:48059113,	48052502	48052742	48052681	48052681	Frame_Shift_Del	C	-	p.G123fs
UCEC	TCGA-DI-A1NN-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57571092:57571276:57572134:57572252:57573353:57573507,	57572135	57572252	57572170	57572171	Frame_Shift_Ins	-	ACTT	p.K547fs
UCEC	TCGA-E6-A1LZ-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842887	128842890	Frame_Shift_Del	ATAA	-	p.L1157fs
UCEC	TCGA-FI-A2D2-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579505	7579506	Frame_Shift_Del	TC	-	p.D61fs
UCEC	TCGA-FI-A2EW-01	NCOA2	ENST00000518287.2	chr8	71056876:71057083:71060507:71060718:71068205:71068875,71053418:71053634:71060507:71060718:71068205:71068875,	71060508	71060718	71060520	71060520	Frame_Shift_Del	T	-	p.I865fs
UCEC	TCGA-FI-A2EX-01	PABPC1	ENST00000318607.5,ENST00000523636.1,ENST00000519004.1,ENST00000522387.1	chr8	101721363:101721451:101721686:101721959:101724589:101724632,	101721687	101721959	101721933	101721933	Frame_Shift_Del	T	-	p.K333fs
UCEC	TCGA-AP-A0LM-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257784	6257785	Frame_Shift_Ins	-	T	p.K16fs
UCEC	TCGA-D1-A0ZS-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-B5-A11G-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-AX-A063-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-D1-A167-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-AP-A054-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-BG-A0LX-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-D1-A17A-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-D1-A101-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-BG-A0VW-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-BS-A0UM-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-B5-A11H-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-AP-A0LT-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-B5-A11U-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K15fs
UCEC	TCGA-DI-A0WH-01	MFN2	ENST00000235329.5,ENST00000444836.1	chr1	12052611:12052747:12056212:12056375:12057353:12057478,	12056213	12056375	12056351	12056351	Frame_Shift_Del	C	-	p.S151fs
UCEC	TCGA-BS-A0U5-01	ARHGEF19	ENST00000270747.3	chr1	16534438:16534720:16535137:16535578:16538996:16539104,	16535138	16535578	16535180	16535181	Frame_Shift_Ins	-	CTGTGTGTGT	p.P123fs
UCEC	TCGA-AX-A0J0-01	USP48	ENST00000529637.1,ENST00000421625.2,ENST00000400301.1,ENST00000308271.9	chr1	22073559:22073642:22074630:22074764:22077999:22078108,	22074631	22074764	22074707	22074708	Frame_Shift_Del	TC	-	p.N278fs
UCEC	TCGA-AX-A0IW-01	HMGCL	ENST00000235958.4,ENST00000436439.2,ENST00000374487.2,ENST00000374490.3,ENST00000374483.4	chr1	24128399:24129054:24130889:24131015:24134624:24134705,	24130890	24131015	24130916	24130923	Frame_Shift_Del	TGTAGACC	-	p.V282fs
UCEC	TCGA-AX-A0J0-01	PAFAH2	ENST00000374284.1,ENST00000374282.3,ENST00000441420.1,ENST00000439092.2	chr1	26310950:26311019:26314721:26314818:26315938:26316092,	26314722	26314818	26314780	26314781	Frame_Shift_Ins	-	A	p.K94fs
UCEC	TCGA-BS-A0TG-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056246	27056253	Frame_Shift_Del	ACATGGGT	-	p.H415fs
UCEC	TCGA-D1-A16B-01	ARID1A	ENST00000457599.2	chr1	27022894:27024031:27056141:27056354:27057642:27057809,	27056142	27056354	27056302	27056302	Frame_Shift_Del	C	-	p.M434fs
UCEC	TCGA-BK-A0CB-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094291	27094292	Frame_Shift_Ins	-	T	p.S1001fs
UCEC	TCGA-AX-A05T-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27092947:27093057:27094280:27094490:27097609:27097817,	27094281	27094490	27094331	27094332	Frame_Shift_Ins	-	CT	p.G1014fs
UCEC	TCGA-D1-A0ZN-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000457599.2	chr1	27094280:27094490:27097609:27097817:27098990:27099123,	27097610	27097817	27097764	27097765	Frame_Shift_Ins	-	TG	p.A1119fs
UCEC	TCGA-D1-A17C-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101256	27101266	Frame_Shift_Del	GCACGGGCTCT	-	p.T1514fs
UCEC	TCGA-A5-A0GM-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101478	27101490	Frame_Shift_Del	GCCCTGCTCCCCT	-	p.A1589fs
UCEC	TCGA-A5-A0GM-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101478	27101490	Frame_Shift_Del	GCCCTGCTCCCCT	-	p.A1589fs
UCEC	TCGA-BS-A0TJ-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101598	27101611	Frame_Shift_Del	CTGCCCCTGTGCAG	-	p.A1628fs
UCEC	TCGA-BS-A0TJ-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101598	27101611	Frame_Shift_Del	CTGCCCCTGTGCAG	-	p.A1628fs
UCEC	TCGA-B5-A11O-01	ARID1A	ENST00000457599.2	chr1	27100292:27100389:27101470:27101711:27102067:27102198,	27101471	27101711	27101635	27101635	Frame_Shift_Del	C	-	p.T1640fs
UCEC	TCGA-B5-A11O-01	ARID1A	ENST00000324856.7,ENST00000374152.2,ENST00000430799.2	chr1	27100292:27100389:27100819:27101711:27102067:27102198,	27100820	27101711	27101635	27101635	Frame_Shift_Del	C	-	p.T1640fs
UCEC	TCGA-E6-A1LZ-01	NUDC	ENST00000321265.5	chr1	27271880:27271964:27272058:27272177:27272620:27272675,	27272059	27272177	27272111	27272112	Frame_Shift_Ins	-	CCAGCGACAGAAGT	p.Q297fs
UCEC	TCGA-D1-A17F-01	TMEM39B	ENST00000336294.5,ENST00000468135.1,ENST00000373634.4,ENST00000487305.1,ENST00000441402.1	chr1	32561260:32561363:32566042:32566163:32568031:32568462,32560384:32560572:32566042:32566163:32568031:32568462,	32566043	32566163	32566131	32566132	Frame_Shift_Ins	-	TCCCC	p.D405fs
UCEC	TCGA-AX-A063-01	CLSPN	ENST00000520551.1,ENST00000318121.3,ENST00000251195.5	chr1	36216850:36217107:36219345:36219537:36225942:36226517,	36219346	36219537	36219380	36219380	Frame_Shift_Del	A	-	p.K580fs
UCEC	TCGA-BS-A0U8-01	THRAP3	ENST00000469141.2,ENST00000354618.5	chr1	36748133:36748301:36751968:36752871:36754660:36755365,	36751969	36752871	36752266	36752267	Frame_Shift_Del	CT	-	p.S146fs
UCEC	TCGA-D1-A0ZS-01	MACF1	ENST00000372915.3,ENST00000289893.4,ENST00000539005.1,ENST00000545844.1,ENST00000317713.7,ENST00000567887.1,ENST00000361689.2,ENST00000476350.1,ENST00000372925.2,ENST00000564288.1	chr1	39833819:39833986:39835701:39835858:39838150:39838268,	39835702	39835858	39835816	39835817	Frame_Shift_Del	TA	-	p.M2792fs
UCEC	TCGA-B5-A11H-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184896	46184897	Frame_Shift_Ins	-	AC	p.Y388fs
UCEC	TCGA-BS-A0UV-01	SAMD13	ENST00000370671.3	chr1	84765240:84765327:84768885:84768970:84791319:84791431,	84768886	84768970	84768895	84768896	Frame_Shift_Ins	-	A	p.E9fs
UCEC	TCGA-BS-A0UJ-01	CD53	ENST00000476408.1	chr1	111434013:111434093:111434966:111435155:111436948:111437023,111434013:111434093:111434966:111435155:111441745:111441938,	111434967	111435155	111435117	111435118	Frame_Shift_Ins	-	T	p.M72fs
UCEC	TCGA-A5-A0GH-01	SYCP1	ENST00000369522.3,ENST00000493377.1,ENST00000369518.1,ENST00000455987.1	chr1	115455653:115455771:115456595:115456666:115466069:115466151,	115456596	115456666	115456608	115456609	Frame_Shift_Ins	-	A	p.E555fs
UCEC	TCGA-BS-A0UV-01	ATP1A1	ENST00000488733.1,ENST00000295598.5	chr1	116915890:116916145:116926635:116926746:116927404:116927464,	116926636	116926746	116926642	116926642	Frame_Shift_Del	C	-	p.R7fs
UCEC	TCGA-A5-A0VP-01	CD2	ENST00000369478.3	chr1	117303023:117303254:117307105:117307228:117311085:117311850,	117307106	117307228	117307211	117307212	Frame_Shift_Del	AG	-	p.R241fs
UCEC	TCGA-D1-A160-01	ASH1L	ENST00000392403.3,ENST00000368346.3	chr1	155429587:155429689:155447676:155452240:155490890:155491409,	155447677	155452240	155448916	155448917	Frame_Shift_Del	TA	-	p.H1248fs
UCEC	TCGA-D1-A17K-01	CD1E	ENST00000368165.3,ENST00000368156.1,ENST00000368155.3	chr1	158323805:158323836:158324166:158324463:158325089:158325128,158323805:158323836:158324166:158324463:158325616:158325730,	158324167	158324463	158324229	158324230	Frame_Shift_Ins	-	A	p.T42fs
UCEC	TCGA-AP-A051-01	ADCY10	ENST00000367848.1,ENST00000485964.1,ENST00000545172.1,ENST00000367851.4	chr1	167778914:167779076:167779961:167780150:167787309:167787505,	167779962	167780150	167779983	167779983	Frame_Shift_Del	T	-	p.K1550fs
UCEC	TCGA-D1-A17D-01	F5	ENST00000367796.3,ENST00000367797.3	chr1	169505743:169505918:169509531:169512352:169513533:169513746,	169509532	169512352	169510415	169510416	Frame_Shift_Del	GA	-	p.P1305fs
UCEC	TCGA-B5-A0K9-01	C1orf112	ENST00000459772.1,ENST00000498289.1,ENST00000359326.4,ENST00000286031.6	chr1	169806067:169806253:169811557:169811680:169812814:169812910,	169811558	169811680	169811585	169811588	Frame_Shift_Del	GTAT	-	p.C586fs
UCEC	TCGA-B5-A0K8-01	SMG7	ENST00000508461.1,ENST00000419169.1	chr1	183441701:183441784:183485008:183485126:183486822:183486955,	183485009	183485126	183485014	183485015	Frame_Shift_Del	AA	-	p.K23fs
UCEC	TCGA-AX-A063-01	HMCN1	ENST00000271588.4,ENST00000367492.2	chr1	186094735:186094926:186097209:186097423:186099097:186099232,	186097210	186097423	186097264	186097265	Frame_Shift_Del	AC	-	p.T4251fs
UCEC	TCGA-AP-A051-01	RGS1	ENST00000367459.3	chr1	192545903:192545965:192547351:192547515:192548266:192549071,	192547352	192547515	192547510	192547510	Frame_Shift_Del	A	-	p.K147fs
UCEC	TCGA-D1-A17U-01	CDC73	ENST00000367435.3	chr1	193107214:193107303:193110979:193111196:193116996:193117095,	193110980	193111196	193111145	193111146	Frame_Shift_Ins	-	AG	p.V229fs
UCEC	TCGA-D1-A177-01	PPFIA4	ENST00000295706.4,ENST00000599966.1	chr1	203030097:203030160:203032955:203033131:203036822:203036893,	203032956	203033131	203033007	203033007	Frame_Shift_Del	C	-	p.S471fs
UCEC	TCGA-BS-A0UJ-01	RPS6KC1	ENST00000543354.1	chr1	213405465:213405598:213414044:213416001:213434900:213434983,	213414045	213416001	213415093	213415094	Frame_Shift_Ins	-	A	p.S759fs
UCEC	TCGA-BS-A0UM-01	CENPF	ENST00000467765.1,ENST00000366955.3	chr1	214822017:214822170:214825052:214825229:214826170:214826332,	214825053	214825229	214825218	214825221	Frame_Shift_Del	ACAA	-	p.K2719fs
UCEC	TCGA-D1-A15W-01	DEGS1	ENST00000323699.4,ENST00000391877.3	chr1	224370967:224371120:224377278:224378021:224380033:224380055,	224377279	224378021	224377954	224377954	Frame_Shift_Del	C	-	p.F254fs
UCEC	TCGA-BG-A0M3-01	ADSS	ENST00000366535.3,ENST00000462358.1	chr1	244582195:244582216:244583471:244583598:244586136:244586218,	244583472	244583598	244583581	244583581	Frame_Shift_Del	A	-	p.K228fs
UCEC	TCGA-AP-A0LG-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917818	10917819	Frame_Shift_Ins	-	AG	p.E315fs
UCEC	TCGA-D1-A177-01	RASGRP3	ENST00000403687.3,ENST00000402538.3,ENST00000407811.1	chr2	33783277:33783403:33783738:33784097:33787795:33789672,	33783739	33784097	33783830	33783831	Frame_Shift_Ins	-	A	p.I600fs
UCEC	TCGA-B5-A11N-01	MSH2	ENST00000406134.1,ENST00000543555.1,ENST00000233146.2	chr2	47690169:47690293:47693796:47693947:47698103:47698201,	47693797	47693947	47693887	47693887	Frame_Shift_Del	G	-	p.R534fs
UCEC	TCGA-A5-A0VP-01	MSH6	ENST00000234420.5	chr2	48018065:48018262:48025749:48028294:48030558:48030824,48023032:48023202:48025749:48028294:48030558:48030824,	48025750	48028294	48026126	48026127	Frame_Shift_Del	AT	-	p.T336fs
UCEC	TCGA-A5-A0VP-01	MSH6	ENST00000538136.1	chr2	48023032:48023202:48025753:48028294:48030558:48030824,	48025754	48028294	48026126	48026127	Frame_Shift_Del	AT	-	p.T336fs
UCEC	TCGA-AX-A063-01	LOXL3	ENST00000264094.3,ENST00000470907.2,ENST00000409549.1,ENST00000393937.2,ENST00000409986.1	chr2	74761226:74761363:74761442:74761558:74761657:74761901,	74761443	74761558	74761527	74761530	Frame_Shift_Del	AGTG	-	p.H618fs
UCEC	TCGA-B5-A11G-01	SUCLG1	ENST00000491123.1,ENST00000393868.2	chr2	84650683:84650896:84652538:84652727:84658631:84658783,	84652539	84652727	84652698	84652699	Frame_Shift_Ins	-	A	p.I286fs
UCEC	TCGA-AX-A0J0-01	SUCLG1	ENST00000430989.1	chr2	84670407:84670524:84676772:84676876:84686296:84686360,	84676773	84676876	84676846	84676847	Frame_Shift_Ins	-	AGGAACAATGC	p.Y43fs
UCEC	TCGA-BS-A0UJ-01	RNF181	ENST00000456023.1	chr2	85823656:85823772:85824075:85824301:85824567:85824704,	85824076	85824301	85824228	85824229	Frame_Shift_Ins	-	A	p.N111fs
UCEC	TCGA-BS-A0UJ-01	RNF181	ENST00000443647.1,ENST00000306368.4	chr2	85824029:85824054:85824226:85824301:85824567:85824704,	85824227	85824301	85824228	85824229	Frame_Shift_Ins	-	A	p.N111fs
UCEC	TCGA-BS-A0UJ-01	MAP4K4	ENST00000425019.1,ENST00000347699.4,ENST00000350198.4,ENST00000417294.1,ENST00000476609.1,ENST00000350878.4,ENST00000413150.2,ENST00000324219.4	chr2	102450870:102450925:102452361:102452440:102456280:102456394,	102452362	102452440	102452423	102452424	Frame_Shift_Ins	-	CT	p.K253fs
UCEC	TCGA-A5-A0GI-01	SULT1C3	ENST00000376700.1	chr2	108875189:108875284:108875421:108875602:108877023:108877136,	108875422	108875602	108875465	108875486	Frame_Shift_Del	AAACTTGGTCAGGTGATGTTAT	-	p.W224fs
UCEC	TCGA-AP-A0LN-01	SULT1C3	ENST00000376700.1	chr2	108875189:108875284:108875421:108875602:108877023:108877136,	108875422	108875602	108875465	108875486	Frame_Shift_Del	AAACTTGGTCAGGTGATGTTAT	-	p.W224fs
UCEC	TCGA-D1-A177-01	SULT1C3	ENST00000376700.1	chr2	108875189:108875284:108875421:108875602:108877023:108877136,	108875422	108875602	108875465	108875486	Frame_Shift_Del	AAACTTGGTCAGGTGATGTTAT	-	p.W224fs
UCEC	TCGA-D1-A163-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109380063	109380064	Frame_Shift_Del	CA	-	p.T1025fs
UCEC	TCGA-D1-A103-01	RANBP2	ENST00000283195.6	chr2	109378556:109378651:109379692:109384844:109388156:109388327,	109379693	109384844	109381824	109381824	Frame_Shift_Del	G	-	p.D1611fs
UCEC	TCGA-B5-A11F-01	PTPN4	ENST00000263708.2,ENST00000430976.1	chr2	120640078:120640199:120643370:120643458:120658293:120658382,	120643371	120643458	120643369	120643438	Frame_Shift_Del	TTGATTGATTGATCTCATTTTTAACTTAATGATGTCTTTATAGAGGCTTATCTCCTGCAGAAGCAGAATT	-	p.I197fs
UCEC	TCGA-D1-A177-01	ZRANB3	ENST00000412849.1,ENST00000403017.2,ENST00000264159.6,ENST00000536680.1,ENST00000401392.1	chr2	135957923:135958010:135960401:135960533:135965003:135965088,	135960402	135960533	135960422	135960423	Frame_Shift_Del	AG	-	p.C1041fs
UCEC	TCGA-AP-A051-01	UBXN4	ENST00000426921.1	chr2	136505836:136505939:136513086:136513261:136519387:136519451,	136513087	136513261	136513106	136513106	Frame_Shift_Del	A	-	p.T119fs
UCEC	TCGA-D1-A163-01	RIF1	ENST00000444746.2,ENST00000428287.2,ENST00000430328.2,ENST00000414861.2,ENST00000243326.5,ENST00000453091.2	chr2	152276738:152276893:152279463:152279556:152285297:152285436,	152279464	152279556	152279532	152279535	Frame_Shift_Del	TTTG	-	p.F256fs
UCEC	TCGA-B5-A11G-01	BAZ2B	ENST00000343439.5,ENST00000392782.1,ENST00000355831.2,ENST00000392783.2	chr2	160175489:160176929:160181321:160181465:160182163:160182429,	160181322	160181465	160181443	160181481	Frame_Shift_Del	TTTCCATTTCAGTCAGAATCATACTAAAGAAAATAATGT	-	p.M2071fs
UCEC	TCGA-A5-A0GI-01	PRKRA	ENST00000325748.4,ENST00000487082.1,ENST00000432031.2	chr2	179308069:179308111:179312231:179312313:179314968:179315138,179309148:179309227:179312231:179312313:179314968:179315138,	179312232	179312313	179312281	179312282	Frame_Shift_Del	TA	-	p.H89fs
UCEC	TCGA-A5-A0GI-01	PRKRA	ENST00000448279.1	chr2	179309148:179309227:179312182:179312313:179314968:179315138,	179312183	179312313	179312281	179312282	Frame_Shift_Del	TA	-	p.H89fs
UCEC	TCGA-B5-A11H-01	TTN	ENST00000359218.5,ENST00000589042.1,ENST00000591111.1,ENST00000342175.6,ENST00000460472.2	chr2	179602808:179603087:179603867:179606648:179617850:179617907,	179603868	179606648	179606092	179606092	Frame_Shift_Del	G	-	p.F3786fs
UCEC	TCGA-D1-A160-01	ASNSD1	ENST00000260952.4,ENST00000420250.1	chr2	190530147:190530177:190530766:190532322:190532489:190532607,	190530767	190532322	190531221	190531222	Frame_Shift_Del	TA	-	p.Y123fs
UCEC	TCGA-AX-A05W-01	SPATS2L	ENST00000409140.3,ENST00000358677.5,ENST00000409385.1,ENST00000409988.3,ENST00000451764.2,ENST00000409718.1,ENST00000409755.3,ENST00000409151.1	chr2	201283972:201284219:201303844:201304051:201305371:201305447,	201303845	201304051	201303934	201303935	Frame_Shift_Ins	-	GGTC	p.A181fs
UCEC	TCGA-D1-A174-01	FN1	ENST00000357009.2	chr2	216232585:216232750:216236631:216236738:216238044:216238133,	216236632	216236738	216236721	216236722	Frame_Shift_Del	GA	-	p.Q2209fs
UCEC	TCGA-D1-A101-01	FN1	ENST00000357009.2	chr2	216232585:216232750:216236631:216236738:216238044:216238133,	216236632	216236738	216236721	216236722	Frame_Shift_Del	GA	-	p.Q2209fs
UCEC	TCGA-D1-A160-01	PID1	ENST00000392054.3	chr2	230020533:230020680:230127398:230127609:230135729:230135955,	230127399	230127609	230127413	230127414	Frame_Shift_Ins	-	A	p.P36fs
UCEC	TCGA-AP-A0LH-01	DIS3L2	ENST00000325385.7,ENST00000409307.1,ENST00000429283.2,ENST00000445090.1,ENST00000390005.5,ENST00000424049.1	chr2	233195399:233195486:233198549:233198697:233199078:233199164,	233198550	233198697	233198691	233198692	Frame_Shift_Ins	-	C	p.L719fs
UCEC	TCGA-AP-A05N-01	GIGYF2	ENST00000474312.1,ENST00000373563.4,ENST00000409547.1,ENST00000409480.1,ENST00000409451.3,ENST00000373566.3,ENST00000409196.3	chr2	233697570:233697803:233704558:233704681:233708755:233708906,	233704559	233704681	233704621	233704621	Frame_Shift_Del	G	-	p.L965fs
UCEC	TCGA-AX-A05Z-01	KCNH8	ENST00000328405.2	chr3	19491597:19491797:19492646:19492896:19498259:19498474,	19492647	19492896	19492658	19492659	Frame_Shift_Ins	-	T	p.P530fs
UCEC	TCGA-AX-A060-01	ZMYND10	ENST00000443080.1,ENST00000431869.1	chr3	50381164:50381281:50382554:50382667:50382918:50383103,	50382555	50382667	50382592	50382592	Frame_Shift_Del	C	-	p.G55fs
UCEC	TCGA-AX-A060-01	ZMYND10	ENST00000360165.3,ENST00000231749.3	chr3	50381164:50381281:50382554:50382663:50382918:50383103,	50382555	50382663	50382592	50382592	Frame_Shift_Del	C	-	p.G55fs
UCEC	TCGA-AX-A1C7-01	GNL3	ENST00000496254.1,ENST00000492349.1,ENST00000479230.1,ENST00000394799.2,ENST00000418458.1,ENST00000474423.1,ENST00000468146.1,ENST00000462550.1	chr3	52720784:52720843:52721261:52721399:52721517:52721631,	52721262	52721399	52721394	52721395	Frame_Shift_Ins	-	AGAGG	p.L71fs
UCEC	TCGA-AP-A0LE-01	WNT5A	ENST00000474267.1,ENST00000264634.4,ENST00000497027.1,ENST00000482079.1	chr3	55508364:55508657:55513341:55513592:55514812:55514946,	55513342	55513592	55513504	55513505	Frame_Shift_Del	GA	-	p.Q77fs
UCEC	TCGA-AP-A0LP-01	ACOX2	ENST00000467738.1,ENST00000459701.2,ENST00000302819.5	chr3	58508222:58508328:58510152:58510332:58512192:58512383,	58510153	58510332	58510265	58510266	Frame_Shift_Del	GA	-	p.P472fs
UCEC	TCGA-B5-A11H-01	ISY1	ENST00000393295.3,ENST00000273541.8	chr3	128849392:128849479:128852916:128853038:128853674:128853797,	128852917	128853038	128852998	128852999	Frame_Shift_Del	CT	-	p.E194fs
UCEC	TCGA-AP-A059-01	IFT122	ENST00000431818.2,ENST00000511425.1,ENST00000512220.1,ENST00000296266.3,ENST00000506507.1,ENST00000347300.2,ENST00000440957.2,ENST00000348417.2	chr3	129225251:129225392:129226510:129226605:129231154:129231255,	129226511	129226605	129226560	129226560	Frame_Shift_Del	T	-	p.L999fs
UCEC	TCGA-AP-A059-01	IFT122	ENST00000507564.1,ENST00000504021.1,ENST00000349441.2	chr3	129225251:129225392:129226507:129226605:129231154:129231255,	129226508	129226605	129226560	129226560	Frame_Shift_Del	T	-	p.L999fs
UCEC	TCGA-AP-A0LH-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142241569:142241683:142242834:142243041:142253921:142254047,	142242835	142243041	142243035	142243036	Frame_Shift_Ins	-	A	p.L1317fs
UCEC	TCGA-AX-A0J1-01	ATR	ENST00000350721.4,ENST00000383101.3	chr3	142280084:142280263:142281073:142281951:142284962:142285103,	142281074	142281951	142281578	142281578	Frame_Shift_Del	A	-	p.F222fs
UCEC	TCGA-D1-A174-01	ETV5	ENST00000537818.1,ENST00000306376.5,ENST00000434744.1,ENST00000480706.1	chr3	185766603:185766649:185769818:185769920:185774863:185775033,	185769819	185769920	185769852	185769853	Frame_Shift_Del	GA	-	p.L426fs
UCEC	TCGA-B5-A11Y-01	IL1RAP	ENST00000342550.2,ENST00000422485.1,ENST00000443369.2,ENST00000439062.1,ENST00000422940.1,ENST00000072516.3,ENST00000447382.1,ENST00000413869.1,ENST00000317757.3,ENST00000412504.2	chr3	190321916:190322202:190326783:190326970:190338063:190338229,	190326784	190326970	190326882	190326904	Frame_Shift_Del	ATATAGAATATGGCATTCAGAGG	-	p.I151fs
UCEC	TCGA-A5-A0R8-01	IL1RAP	ENST00000342550.2,ENST00000422485.1,ENST00000443369.2,ENST00000439062.1,ENST00000422940.1,ENST00000072516.3,ENST00000447382.1,ENST00000413869.1,ENST00000317757.3,ENST00000412504.2	chr3	190321916:190322202:190326783:190326970:190338063:190338229,	190326784	190326970	190326902	190326976	Frame_Shift_Del	AGGATCACTTGTCCAAATGTAGATGGATATTTTCCTTCCAGTGTCAAACCGACTATCACTTGGTATATGGTAAGG	-	p.R157fs
UCEC	TCGA-AP-A0LE-01	TMEM44	ENST00000273580.7,ENST00000494894.1,ENST00000347147.4,ENST00000381975.3,ENST00000473092.1	chr3	194336297:194336426:194337827:194337998:194343952:194344039,	194337828	194337998	194337843	194337844	Frame_Shift_Del	CG	-	p.A256fs
UCEC	TCGA-A5-A0GA-01	JAKMIP1	ENST00000409021.3,ENST00000409371.3	chr4	6043885:6043954:6050583:6050649:6051545:6051599,	6050584	6050649	6050598	6050599	Frame_Shift_Ins	-	A	p.A671fs
UCEC	TCGA-BS-A0UF-01	SCFD2	ENST00000401642.3	chr4	53751913:53752033:53773623:53773758:53786891:53787037,	53773624	53773758	53773639	53773639	Frame_Shift_Del	A	-	p.F609fs
UCEC	TCGA-AX-A05Y-01	CHIC2	ENST00000263921.3	chr4	54880003:54880063:54880229:54880286:54915121:54915277,	54880230	54880286	54880236	54880237	Frame_Shift_Ins	-	TATA	p.H128fs
UCEC	TCGA-D1-A17Q-01	UBA6	ENST00000322244.5	chr4	68497574:68497626:68499062:68499191:68499959:68500040,	68499063	68499191	68499130	68499130	Frame_Shift_Del	C	-	p.R692fs
UCEC	TCGA-D1-A0ZS-01	ALB	ENST00000415165.2,ENST00000401494.3,ENST00000295897.4,ENST00000476441.2,ENST00000509063.1,ENST00000511370.1,ENST00000503124.1	chr4	74281973:74282070:74283804:74284028:74285223:74285262,74283247:74283386:74283804:74284028:74285223:74285262,	74283805	74284028	74283813	74283813	Frame_Shift_Del	G	-	p.V480fs
UCEC	TCGA-AP-A051-01	ABCG2	ENST00000237612.3,ENST00000515655.1	chr4	89020475:89020600:89022381:89022471:89028335:89028418,	89022382	89022471	89022413	89022413	Frame_Shift_Del	C	-	p.E446fs
UCEC	TCGA-D1-A17A-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106155403	106155404	Frame_Shift_Del	TC	-	p.S104fs
UCEC	TCGA-BS-A0UM-01	AP1AR	ENST00000274000.5,ENST00000309703.6	chr4	113186889:113186963:113187743:113187872:113189299:113190833,	113187744	113187872	113187746	113187747	Frame_Shift_Del	CT	-	p.S174fs
UCEC	TCGA-BS-A0UJ-01	PDE5A	ENST00000394439.1,ENST00000264805.5,ENST00000354960.3	chr4	120419695:120419893:120422324:120422408:120423735:120423810,	120422325	120422408	120422387	120422477	Frame_Shift_Del	TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA	-	p.D803fs
UCEC	TCGA-D1-A0ZO-01	EXOSC9	ENST00000511454.1,ENST00000379663.3,ENST00000511132.1,ENST00000503139.1,ENST00000509800.1,ENST00000512454.1,ENST00000243498.5,ENST00000509980.1	chr4	122728694:122728777:122731121:122731254:122732737:122732796,	122731122	122731254	122731125	122731126	Frame_Shift_Del	AT	-	p.Y204fs
UCEC	TCGA-D1-A0ZO-01	EXOSC9	ENST00000513654.1	chr4	122728694:122728777:122731121:122731228:122732737:122732826,	122731122	122731228	122731125	122731126	Frame_Shift_Del	AT	-	p.Y204fs
UCEC	TCGA-D1-A17K-01	NAA15	ENST00000296543.5	chr4	140297530:140297627:140299909:140300008:140305985:140306132,	140299910	140300008	140300008	140300008	Frame_Shift_Del	G	-	p.A719fs
UCEC	TCGA-DI-A0WH-01	TMA16	ENST00000508268.1,ENST00000513134.1,ENST00000358572.5,ENST00000513272.1	chr4	164415859:164415956:164428184:164428297:164433973:164434011,	164428185	164428297	164428216	164428216	Frame_Shift_Del	G	-	p.E13fs
UCEC	TCGA-D1-A174-01	IL6ST	ENST00000502326.3,ENST00000522633.2,ENST00000536319.1,ENST00000381294.3,ENST00000381287.4,ENST00000503773.2,ENST00000336909.5,ENST00000381298.2	chr5	55247336:55247432:55247756:55247903:55248077:55248179,	55247757	55247903	55247829	55247830	Frame_Shift_Ins	-	A	p.P542fs
UCEC	TCGA-BS-A0UA-01	PIK3R1	ENST00000521381.1,ENST00000520675.1,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1	chr5	67569217:67569310:67569766:67569841:67575429:67575561,	67569767	67569841	67569797	67569798	Frame_Shift_Del	AG	-	p.S154fs
UCEC	TCGA-B5-A0JZ-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589583	67589586	Frame_Shift_Del	TACA	-	p.H450fs
UCEC	TCGA-B5-A0JZ-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589590	67589593	Frame_Shift_Del	ATAT	-	p.Y452fs
UCEC	TCGA-B5-A0K1-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589620	67589620	Frame_Shift_Del	A	-	p.E462fs
UCEC	TCGA-B5-A11J-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591246	67591273	Frame_Shift_Del	TCAAAACTGTTTTTCAGGTGGTTGACTC	-	p.M583fs
UCEC	TCGA-A5-A0GU-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591270	67591271	Frame_Shift_Ins	-	G	p.Q591fs
UCEC	TCGA-D1-A169-01	PIK3R1	ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000518813.1	chr5	67590975:67591152:67591247:67591316:67591998:67592169,	67591248	67591316	67591310	67591318	Frame_Shift_Del	CTGAAGAGT	-	p.E604fs
UCEC	TCGA-E6-A1LZ-01	BDP1	ENST00000508917.2,ENST00000358731.4,ENST00000380675.2	chr5	70800447:70800578:70805291:70806978:70808067:70808255,	70805292	70806978	70805967	70805968	Frame_Shift_Ins	-	AG	p.S1018fs
UCEC	TCGA-AX-A0J1-01	TNPO1	ENST00000337273.5,ENST00000523768.1,ENST00000506351.2,ENST00000605210.1,ENST00000454282.1	chr5	72189502:72189530:72192284:72192383:72192882:72192978,	72192285	72192383	72192330	72192330	Frame_Shift_Del	T	-	p.S731fs
UCEC	TCGA-BS-A0TJ-01	ANKRD31	ENST00000504022.1,ENST00000274361.3,ENST00000506364.2	chr5	74380096:74380199:74387085:74387226:74400052:74401043,	74387086	74387226	74387163	74387163	Frame_Shift_Del	A	-	p.Y1742fs
UCEC	TCGA-AX-A06H-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833391	82833392	Frame_Shift_Del	AG	-	p.D1526fs
UCEC	TCGA-BG-A0M3-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82833400	82833401	Frame_Shift_Ins	-	A	p.T1526fs
UCEC	TCGA-D1-A177-01	VCAN	ENST00000343200.5	chr5	82815167:82818128:82832825:82838087:82841355:82841469,82807921:82808215:82832825:82838087:82841355:82841469,	82832826	82838087	82835229	82835232	Frame_Shift_Del	AACA	-	p.T2138fs
UCEC	TCGA-A5-A0GH-01	DNAJC18	ENST00000302060.5	chr5	138749875:138749961:138755741:138755914:138758396:138758506,	138755742	138755914	138755844	138755845	Frame_Shift_Ins	-	A	p.D283fs
UCEC	TCGA-BS-A0UM-01	ARAP3	ENST00000513878.1,ENST00000508305.1,ENST00000239440.4	chr5	141051461:141051547:141051668:141051868:141052118:141052225,	141051669	141051868	141051719	141051719	Frame_Shift_Del	G	-	p.P512fs
UCEC	TCGA-BS-A0UF-01	TCERG1	ENST00000549332.1,ENST00000394421.2,ENST00000507175.1,ENST00000296702.5	chr5	145836745:145836898:145838446:145838900:145843113:145843356,	145838447	145838900	145838893	145838911	Frame_Shift_Del	AGTATCAAGTGAGTACCAC	-	p.V296fs
UCEC	TCGA-A5-A0GA-01	TCERG1	ENST00000506524.1,ENST00000549332.1,ENST00000394421.2,ENST00000296702.5,ENST00000514719.1	chr5	145883033:145883102:145883386:145883569:145886590:145886740,	145883387	145883569	145883505	145883506	Frame_Shift_Del	GA	-	p.E892fs
UCEC	TCGA-D1-A17C-01	TCOF1	ENST00000377797.3,ENST00000323668.7,ENST00000513346.1,ENST00000514442.1,ENST00000451292.1,ENST00000445265.2,ENST00000504761.2,ENST00000439160.2,ENST00000394269.3,ENST00000427724.2	chr5	149754516:149754726:149754901:149755117:149755283:149755472,	149754902	149755117	149754989	149754989	Frame_Shift_Del	C	-	p.K528fs
UCEC	TCGA-AX-A05W-01	GALNT10	ENST00000519544.1,ENST00000425427.2,ENST00000297107.6,ENST00000520647.1	chr5	153709131:153709298:153760007:153760191:153765872:153765990,153755876:153756022:153760007:153760191:153765872:153765990,	153760008	153760191	153760076	153760080	Frame_Shift_Del	CGGTA	-	p.Y276fs
UCEC	TCGA-AP-A0LH-01	RNF44	ENST00000274811.4,ENST00000537487.1,ENST00000513029.1	chr5	175955958:175956091:175956288:175956388:175956523:175956645,	175956289	175956388	175956294	175956295	Frame_Shift_Ins	-	C	p.L410fs
UCEC	TCGA-AX-A06H-01	F12	ENST00000253496.3	chr5	176832735:176832806:176832962:176833062:176836046:176836104,	176832963	176833062	176832986	176832987	Frame_Shift_Ins	-	T	p.R66fs
UCEC	TCGA-D1-A17U-01	RMND5B	ENST00000507575.1	chr5	177558237:177558377:177565108:177565259:177569583:177569614,177562173:177562313:177565108:177565259:177569583:177569614,177558035:177558055:177565108:177565259:177569583:177569614,	177565109	177565259	177565142	177565143	Frame_Shift_Del	GA	-	p.E10fs
UCEC	TCGA-D1-A17U-01	RMND5B	ENST00000512663.1	chr5	177558237:177558377:177565108:177565397:177569583:177569614,	177565109	177565397	177565142	177565143	Frame_Shift_Del	GA	-	p.E10fs
UCEC	TCGA-D1-A168-01	HNRNPAB	ENST00000504898.1,ENST00000358344.3	chr5	177634094:177634226:177636330:177636448:177637132:177637273,	177636331	177636448	177636363	177636364	Frame_Shift_Ins	-	T	p.Y234fs
UCEC	TCGA-D1-A168-01	HNRNPAB	ENST00000506339.1	chr5	177634094:177634226:177636330:177636433:177637132:177637273,	177636331	177636433	177636363	177636364	Frame_Shift_Ins	-	T	p.Y234fs
UCEC	TCGA-D1-A17D-01	RIPK1	ENST00000380409.2,ENST00000259808.4,ENST00000479389.1,ENST00000541791.1	chr6	3085492:3085642:3089814:3089891:3104458:3104549,	3089815	3089891	3089839	3089842	Frame_Shift_Del	TTTA	-	p.Y289fs
UCEC	TCGA-BS-A0U9-01	HLA-B	ENST00000498007.1	chr6	31323283:31323369:31323943:31324734:31324862:31324956,	31323944	31324734	31324373	31324374	Frame_Shift_Del	AG	-	p.L136fs
UCEC	TCGA-D1-A17H-01	ATF6B	ENST00000375203.3,ENST00000375201.4	chr6	32085363:32085471:32085635:32085815:32086551:32086638,	32085636	32085815	32085784	32085785	Frame_Shift_Del	GA	-	p.P426fs
UCEC	TCGA-AP-A0LH-01	XPO5	ENST00000496341.2,ENST00000265351.7,ENST00000424378.2	chr6	43519060:43519190:43521109:43521240:43523572:43523701,	43521110	43521240	43521203	43521204	Frame_Shift_Ins	-	C	p.C493fs
UCEC	TCGA-AP-A0LT-01	DST	ENST00000370754.5,ENST00000312431.6,ENST00000361203.3,ENST00000446842.2,ENST00000370769.4	chr6	56468361:56468511:56468634:56474142:56475224:56475360,	56468635	56474142	56470905	56470905	Frame_Shift_Del	C	-	p.A2630fs
UCEC	TCGA-AP-A0LH-01	SENP6	ENST00000370014.3	chr6	76344422:76344527:76344695:76344716:76357446:76357517,	76344696	76344716	76344716	76344717	Frame_Shift_Ins	-	G	p.K161fs
UCEC	TCGA-AP-A05P-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000456101.2	chr6	109771172:109771288:109771502:109771760:109772802:109772903,	109771503	109771760	109771579	109771580	Frame_Shift_Ins	-	C	p.A372fs
UCEC	TCGA-AP-A0LG-01	MICAL1	ENST00000368952.4,ENST00000358807.3,ENST00000431946.1,ENST00000358577.3,ENST00000456101.2	chr6	109774465:109774570:109774840:109775048:109775141:109775442,	109774841	109775048	109774946	109774947	Frame_Shift_Del	GA	-	p.R121fs
UCEC	TCGA-BG-A18B-01	HEY2	ENST00000368365.1,ENST00000368364.3	chr6	126073152:126073236:126075610:126075692:126080262:126082415,	126075611	126075692	126075692	126075719	Frame_Shift_Del	GGTAAGTAGATGACTTCATTTTTTTTTT	-	p.G110fs
UCEC	TCGA-B5-A0K4-01	PLEKHG1	ENST00000358517.2,ENST00000475490.1,ENST00000367328.1	chr6	151116991:151117038:151121854:151122005:151125745:151125877,	151121855	151122005	151121930	151121942	Frame_Shift_Del	GAAACACTCGCTG	-	p.K236fs
UCEC	TCGA-D1-A17H-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151672944	151672945	Frame_Shift_Ins	-	A	p.A1141fs
UCEC	TCGA-B5-A11V-01	ARID1B	ENST00000452544.1,ENST00000350026.5,ENST00000367148.1,ENST00000319584.6,ENST00000346085.5,ENST00000275248.4	chr6	157256604:157256710:157405795:157406039:157454161:157454341,157256604:157256710:157405795:157406039:157431605:157431695,	157405796	157406039	157405951	157405951	Frame_Shift_Del	C	-	p.P661fs
UCEC	TCGA-D1-A15X-01	RPS6KA2	ENST00000509742.1,ENST00000265678.4,ENST00000481261.2,ENST00000510118.1,ENST00000405189.3,ENST00000503859.1	chr6	166827281:166827419:166831712:166831830:166833369:166833446,	166831713	166831830	166831741	166831741	Frame_Shift_Del	T	-	p.N645fs
UCEC	TCGA-BS-A0UJ-01	SUN1	ENST00000471349.1,ENST00000456758.2,ENST00000493681.1,ENST00000413171.2,ENST00000340926.3	chr7	882842:882869:882977:883157:888054:888058,	882978	883157	883046	883046	Frame_Shift_Del	T	-	p.F183fs
UCEC	TCGA-AP-A054-01	PHF14	ENST00000445996.2,ENST00000403050.3,ENST00000423760.2,ENST00000521747.1,ENST00000490957.1	chr7	11068307:11068445:11075266:11075413:11076044:11076315,	11075267	11075413	11075380	11075381	Frame_Shift_Del	AG	-	p.K527fs
UCEC	TCGA-AP-A0LN-01	TBRG4	ENST00000483615.1	chr7	45141451:45141669:45141879:45142090:45142931:45143042,	45141880	45142090	45142001	45142001	Frame_Shift_Del	T	-	p.R423fs
UCEC	TCGA-AP-A0LN-01	TBRG4	ENST00000258770.3,ENST00000361278.3,ENST00000494076.1,ENST00000395655.4,ENST00000495973.1	chr7	45141451:45141669:45141945:45142090:45142931:45143042,	45141946	45142090	45142001	45142001	Frame_Shift_Del	T	-	p.R423fs
UCEC	TCGA-BS-A0UF-01	MAGI2	ENST00000354212.4,ENST00000522391.1	chr7	77807352:77807419:77814945:77814987:77824190:77824380,	77814946	77814987	77814974	77814974	Frame_Shift_Del	G	-	p.R762fs
UCEC	TCGA-B5-A0K9-01	AKAP9	ENST00000358100.2,ENST00000359028.2,ENST00000356239.3	chr7	91670017:91670212:91671359:91671500:91671981:91672085,	91671360	91671500	91671392	91671393	Frame_Shift_Del	AG	-	p.R1654fs
UCEC	TCGA-BG-A0MQ-01	RBM48	ENST00000265732.5	chr7	92161717:92161863:92163715:92164284:92166164:92166848,	92163716	92164284	92164020	92164021	Frame_Shift_Del	TT	-	p.L252fs
UCEC	TCGA-AP-A0LT-01	CDHR3	ENST00000478080.1,ENST00000317716.9,ENST00000542731.1	chr7	105656372:105656471:105658291:105658518:105660818:105660990,	105658292	105658518	105658505	105658506	Frame_Shift_Ins	-	A	p.S548fs
UCEC	TCGA-D1-A0ZP-01	AKR1B1	ENST00000285930.4,ENST00000487438.1,ENST00000434222.1,ENST00000498771.1,ENST00000465351.1	chr7	134133748:134133871:134134471:134134549:134135537:134135654,	134134472	134134549	134134544	134134545	Frame_Shift_Del	CC	-	p.G119fs
UCEC	TCGA-AJ-A23M-01	MKRN1	ENST00000475010.1,ENST00000443720.2	chr7	140156451:140156666:140171682:140171811:140178959:140178982,140159728:140159736:140171682:140171811:140178959:140178982,	140171683	140171811	140171699	140171699	Frame_Shift_Del	A	-	p.Y100fs
UCEC	TCGA-AP-A0LM-01	CLEC5A	ENST00000418498.1,ENST00000438351.1,ENST00000551012.2	chr7	141645140:141645200:141646013:141646112:141646606:141646687,	141646014	141646112	141646037	141646037	Frame_Shift_Del	C	-	p.G19fs
UCEC	TCGA-AX-A0J1-01	ESYT2	ENST00000251527.5,ENST00000435514.2,ENST00000275418.7	chr7	158531713:158531812:158534213:158534587:158536219:158536369,	158534214	158534587	158534367	158534367	Frame_Shift_Del	G	-	p.P699fs
UCEC	TCGA-BS-A0TA-01	LOXL2	ENST00000520349.1,ENST00000522446.1,ENST00000389131.3,ENST00000519809.1,ENST00000518878.1	chr8	23177473:23177565:23179642:23179794:23185894:23186078,	23179643	23179794	23179745	23179746	Frame_Shift_Ins	-	T	p.S401fs
UCEC	TCGA-B5-A0K8-01	NRG1	ENST00000338921.4,ENST00000287842.3,ENST00000405005.3,ENST00000518206.1,ENST00000522569.1,ENST00000356819.4,ENST00000521670.1,ENST00000523534.1,ENST00000341377.5,ENST00000523079.1	chr8	32472031:32472082:32474352:32474403:32585466:32585596,	32474353	32474403	32474383	32474383	Frame_Shift_Del	A	-	p.G162fs
UCEC	TCGA-D1-A17U-01	STAU2	ENST00000521727.1,ENST00000518981.1,ENST00000519961.1,ENST00000522695.1,ENST00000517542.1,ENST00000355780.5,ENST00000522509.1,ENST00000524300.1,ENST00000521447.1	chr8	74529526:74529686:74585341:74585477:74600888:74601048,	74585342	74585477	74585345	74585348	Frame_Shift_Del	TGAT	-	p.N103fs
UCEC	TCGA-AX-A0IS-01	ZBTB10	ENST00000430430.1,ENST00000426744.2,ENST00000455036.3	chr8	81398483:81400017:81411728:81412617:81426144:81426243,	81411729	81412617	81411923	81411924	Frame_Shift_Ins	-	AA	p.T390fs
UCEC	TCGA-D1-A16F-01	INTS8	ENST00000523731.1,ENST00000523206.1,ENST00000343161.4,ENST00000520845.1,ENST00000447247.1,ENST00000520526.1,ENST00000523321.1,ENST00000524333.1	chr8	95866032:95866143:95869004:95869206:95871738:95871860,	95869005	95869206	95869029	95869030	Frame_Shift_Del	TT	-	p.F593fs
UCEC	TCGA-D1-A17Q-01	CPQ	ENST00000220763.5,ENST00000522617.1	chr8	98041696:98041722:98078236:98078438:98155247:98155416,	98078237	98078438	98078360	98078367	Frame_Shift_Del	CAGCCCCT	-	p.P394fs
UCEC	TCGA-B5-A1MY-01	ADCY8	ENST00000286355.5	chr8	131880091:131880192:131896809:131897007:131916017:131916288,	131896810	131897007	131896964	131896964	Frame_Shift_Del	T	-	p.N652fs
UCEC	TCGA-D1-A16F-01	PLEC	ENST00000345136.3,ENST00000436759.2,ENST00000354958.2,ENST00000527096.1,ENST00000322810.4,ENST00000398774.2,ENST00000356346.3,ENST00000354589.3,ENST00000357649.2	chr8	144996419:144996563:144996671:145000052:145000951:145001050,	144996672	145000052	144996775	144996776	Frame_Shift_Del	CT	-	p.S2578fs
UCEC	TCGA-BS-A0UM-01	KANK1	ENST00000382303.1,ENST00000354485.5,ENST00000382297.2,ENST00000489369.1	chr9	676889:677009:710803:713464:730050:730194,	710804	713464	712394	712397	Frame_Shift_Del	AAAC	-	p.N545fs
UCEC	TCGA-B5-A0K2-01	C9orf72	ENST00000488117.1	chr9	27556558:27556794:27558488:27560297:27561582:27561647,	27558489	27560297	27560281	27560291	Frame_Shift_Del	AGTGTGAGCTG	-	p.S225fs
UCEC	TCGA-B5-A0K2-01	C9orf72	ENST00000380003.3	chr9	27558488:27558605:27560224:27560297:27561582:27561647,	27560225	27560297	27560281	27560291	Frame_Shift_Del	AGTGTGAGCTG	-	p.S225fs
UCEC	TCGA-AX-A060-01	TLE1	ENST00000376472.1,ENST00000376499.3,ENST00000418319.1	chr9	84235368:84235472:84248262:84248279:84249011:84249216,	84248263	84248279	84248275	84248278	Frame_Shift_Del	TCTG	-	p.D193fs
UCEC	TCGA-BS-A0UJ-01	CENPP	ENST00000375579.3,ENST00000375576.1,ENST00000375587.3	chr9	95373595:95373675:95374804:95374896:95375300:95377446,	95374805	95374896	95374861	95374862	Frame_Shift_Ins	-	A	p.L236fs
UCEC	TCGA-BG-A0VW-01	NCBP1	ENST00000375147.3	chr9	100403843:100403944:100405485:100405642:100407398:100407506,	100405486	100405642	100405586	100405587	Frame_Shift_Ins	-	T	p.R110fs
UCEC	TCGA-AX-A0J1-01	TEX10	ENST00000374902.4	chr9	103065913:103066124:103070781:103070963:103072580:103072657,	103070782	103070963	103070783	103070786	Frame_Shift_Del	TCTT	-	p.K821fs
UCEC	TCGA-AP-A0LT-01	WDR38	ENST00000373574.1	chr9	127618139:127618237:127618518:127618599:127618747:127618879,	127618519	127618599	127618537	127618538	Frame_Shift_Del	CT	-	p.L143fs
UCEC	TCGA-EY-A212-01	PKN3	ENST00000485301.1,ENST00000291906.4	chr9	131479025:131479202:131480603:131480666:131480827:131480904,	131480604	131480666	131480644	131480644	Frame_Shift_Del	C	-	p.H676fs
UCEC	TCGA-AP-A0LH-01	DPP7	ENST00000463619.1,ENST00000483783.1,ENST00000371579.2	chr9	140005331:140005402:140006141:140006206:140006324:140006481,	140006142	140006206	140006205	140006206	Frame_Shift_Ins	-	C	p.D403fs
UCEC	TCGA-D1-A163-01	SLC34A3	ENST00000538474.1,ENST00000361134.2	chr9	140127660:140127856:140128084:140128174:140128314:140128393,	140128085	140128174	140128120	140128121	Frame_Shift_Ins	-	A	p.N264fs
UCEC	TCGA-BG-A0MQ-01	ITIH2	ENST00000379587.4,ENST00000358415.4	chr10	7768912:7769081:7769665:7769791:7771914:7772096,	7769666	7769791	7769789	7769790	Frame_Shift_Ins	-	GGGC	p.E428fs
UCEC	TCGA-B5-A0JZ-01	VIM	ENST00000487938.1,ENST00000544301.1,ENST00000224237.5	chr10	17271289:17271984:17272648:17272709:17275585:17275681,	17272649	17272709	17272668	17272669	Frame_Shift_Ins	-	AG	p.E198fs
UCEC	TCGA-A5-A0G9-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832773	24832773	Frame_Shift_Del	C	-	p.L1526fs
UCEC	TCGA-AX-A0J1-01	WAC	ENST00000347934.4	chr10	28884855:28884970:28897114:28897360:28899627:28899639,28879650:28879761:28897114:28897360:28899627:28899639,	28897115	28897360	28897212	28897212	Frame_Shift_Del	T	-	p.A340fs
UCEC	TCGA-AX-A063-01	SVIL	ENST00000375398.2,ENST00000355867.4	chr10	29820930:29821101:29821457:29822387:29824917:29824998,	29821458	29822387	29821909	29821910	Frame_Shift_Ins	-	A	p.G462fs
UCEC	TCGA-B5-A11H-01	WDFY4	ENST00000325239.5,ENST00000413659.2	chr10	49982502:49982717:49983756:49983851:49984794:49984956,	49983757	49983851	49983821	49983822	Frame_Shift_Del	CA	-	p.H947fs
UCEC	TCGA-AP-A05N-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845590	63845591	Frame_Shift_Ins	-	ATCAAACA	p.H445fs
UCEC	TCGA-D1-A0ZO-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845592	63845607	Frame_Shift_Del	TCAAACATGAAATACC	-	p.H446fs
UCEC	TCGA-A5-A0VO-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845593	63845605	Frame_Shift_Del	CAAACATGAAATA	-	p.K445fs
UCEC	TCGA-BS-A0U7-01	ARID5B	ENST00000309334.5,ENST00000279873.7	chr10	63829458:63829556:63845460:63845659:63850620:63852823,	63845461	63845659	63845617	63845618	Frame_Shift_Ins	-	AAAGA	p.E455fs
UCEC	TCGA-BS-A0TJ-01	ANXA11	ENST00000372231.3,ENST00000535999.1,ENST00000438331.1,ENST00000422982.3,ENST00000360615.4,ENST00000537102.1,ENST00000265447.4	chr10	81923104:81923161:81923289:81923369:81923808:81923899,	81923290	81923369	81923291	81923292	Frame_Shift_Ins	-	GA	p.Q343fs
UCEC	TCGA-AP-A0LE-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685281	89685294	Frame_Shift_Del	CAAAGCATAAAAAC	-	p.K60fs
UCEC	TCGA-A5-A0R7-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685292	89685293	Frame_Shift_Ins	-	ACCATTAC	p.K66fs
UCEC	TCGA-D1-A16E-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685312	89685313	Frame_Shift_Del	TC	-	p.A72fs
UCEC	TCGA-AX-A05U-01	PTEN	ENST00000371953.3	chr10	89653781:89653866:89685269:89685314:89690802:89690846,	89685270	89685314	89685314	89685315	Frame_Shift_Del	TG	-	p.C71fs
UCEC	TCGA-A5-A0R8-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690809	89690810	Frame_Shift_Ins	-	GAAA	p.H74fs
UCEC	TCGA-D1-A17H-01	PTEN	ENST00000371953.3,ENST00000498703.1	chr10	89685279:89685314:89690802:89690846:89692769:89693008,	89690803	89690846	89690811	89690811	Frame_Shift_Del	A	-	p.R74fs
UCEC	TCGA-AX-A06L-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711896	89711896	Frame_Shift_Del	A	-	p.R172fs
UCEC	TCGA-A5-A0R7-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711927	89711928	Frame_Shift_Ins	-	A	p.N184fs
UCEC	TCGA-AP-A051-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711927	89711928	Frame_Shift_Ins	-	A	p.N184fs
UCEC	TCGA-D1-A15Z-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711964	89711965	Frame_Shift_Ins	-	T	p.H195fs
UCEC	TCGA-D1-A17S-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711966	89711967	Frame_Shift_Ins	-	TC	p.H196fs
UCEC	TCGA-B5-A11H-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89711988	89711989	Frame_Shift_Del	TA	-	p.I203fs
UCEC	TCGA-D1-A16F-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712008	89712009	Frame_Shift_Ins	-	A	p.T210fs
UCEC	TCGA-BG-A0YV-01	PTEN	ENST00000371953.3	chr10	89692769:89693008:89711874:89712016:89717609:89717776,	89711875	89712016	89712016	89712019	Frame_Shift_Del	AGTA	-	p.N212fs
UCEC	TCGA-A5-A0GQ-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717626	89717626	Frame_Shift_Del	C	-	p.C218fs
UCEC	TCGA-AP-A0LD-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717683	89717684	Frame_Shift_Ins	-	A	p.F237fs
UCEC	TCGA-B5-A11S-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.P248fs
UCEC	TCGA-B5-A11X-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717715	89717716	Frame_Shift_Ins	-	A	p.P248fs
UCEC	TCGA-A5-A0R9-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717749	89717749	Frame_Shift_Del	C	-	p.H259fs
UCEC	TCGA-D1-A165-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717757	89717758	Frame_Shift_Del	AG	-	p.N262fs
UCEC	TCGA-A5-A0GU-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717771	89717772	Frame_Shift_Ins	-	AAAAG	p.D268fs
UCEC	TCGA-B5-A11I-01	PLCE1	ENST00000371375.1,ENST00000371385.3,ENST00000371380.3,ENST00000260766.3	chr10	96073010:96073139:96076303:96076513:96081657:96081816,	96076304	96076513	96076346	96076373	Frame_Shift_Del	TATTTTTTGATGGAAGAAAAATATTTTA	-	p.F2060fs
UCEC	TCGA-B5-A0K9-01	VWA2	ENST00000603594.1,ENST00000298715.4,ENST00000392982.3	chr10	116044621:116044729:116045697:116046270:116048696:116049248,	116045698	116046270	116046128	116046128	Frame_Shift_Del	G	-	p.G477fs
UCEC	TCGA-AP-A051-01	TIAL1	ENST00000369092.4,ENST00000489822.1,ENST00000369093.2,ENST00000436547.2,ENST00000470781.1,ENST00000497671.1,ENST00000369087.1,ENST00000495821.1	chr10	121336986:121337047:121337152:121337248:121338237:121338346,	121337153	121337248	121337192	121337192	Frame_Shift_Del	A	-	p.C222fs
UCEC	TCGA-AX-A06H-01	TIAL1	ENST00000369092.4,ENST00000489822.1,ENST00000436547.2,ENST00000497671.1	chr10	121341970:121342069:121347663:121347760:121355945:121356007,	121347664	121347760	121347664	121347665	Frame_Shift_Del	CT	-	p.E43fs
UCEC	TCGA-BS-A0UV-01	FGFR2	ENST00000478859.1,ENST00000457416.2,ENST00000356226.4,ENST00000369061.4,ENST00000358487.5,ENST00000369060.4,ENST00000369059.1,ENST00000604236.1,ENST00000346997.2	chr10	123239368:123239535:123243211:123243317:123244908:123245046,	123243212	123243317	123243222	123243223	Frame_Shift_Ins	-	T	p.T765fs
UCEC	TCGA-D1-A177-01	RASSF7	ENST00000454668.2,ENST00000397583.3,ENST00000344375.4,ENST00000397582.3,ENST00000431809.1	chr11	561761:561892:562078:562776:563188:563317,	562079	562776	562143	562144	Frame_Shift_Del	AG	-	p.E64fs
UCEC	TCGA-D1-A177-01	RASSF7	ENST00000414138.2	chr11	561761:561892:562083:562776:563188:563317,	562084	562776	562143	562144	Frame_Shift_Del	AG	-	p.E64fs
UCEC	TCGA-D1-A17H-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1270286	1270286	Frame_Shift_Del	C	-	p.Q4063fs
UCEC	TCGA-BS-A0UF-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1271222	1271222	Frame_Shift_Del	C	-	p.T4375fs
UCEC	TCGA-BS-A0UF-01	MUC5B	ENST00000529681.1,ENST00000447027.1	chr11	1261407:1261605:1262080:1272973:1273572:1273754,	1262081	1272973	1271225	1271226	Frame_Shift_Del	CG	-	p.T4375fs
UCEC	TCGA-BS-A0TJ-01	PPFIBP2	ENST00000299492.4,ENST00000527790.1	chr11	7570670:7570770:7586783:7586998:7614362:7614455,	7586784	7586998	7586924	7586925	Frame_Shift_Del	GA	-	p.R70fs
UCEC	TCGA-D1-A16S-01	NAV2	ENST00000360655.4,ENST00000540292.1,ENST00000396085.1,ENST00000527559.2,ENST00000349880.4,ENST00000396087.3	chr11	20070273:20070741:20072834:20072879:20075625:20075786,20071381:20071447:20072834:20072879:20075625:20075786,	20072835	20072879	20072852	20072852	Frame_Shift_Del	G	-	p.N1486fs
UCEC	TCGA-B5-A0K6-01	MADD	ENST00000407859.3,ENST00000342922.4,ENST00000349238.3,ENST00000395336.3,ENST00000402799.1,ENST00000311027.5,ENST00000406482.1	chr11	47317046:47317130:47317447:47317606:47330141:47330250,	47317448	47317606	47317560	47317563	Frame_Shift_Del	TGTC	-	p.S1239fs
UCEC	TCGA-DI-A1NN-01	CTNND1	ENST00000532787.1,ENST00000361796.4,ENST00000525902.1,ENST00000529526.1,ENST00000358694.6,ENST00000530748.1,ENST00000428599.2,ENST00000426142.2,ENST00000361332.4,ENST00000528232.1,ENST00000399050.4,ENST00000534579.1,ENST00000533667.1,ENST00000532463.1,ENST00000399039.4,ENST00000530094.1,ENST00000529873.1,ENST00000361391.6,ENST00000526772.1,ENST00000526938.1,ENST00000532649.1,ENST00000528621.1,ENST00000527467.1,ENST00000524630.1,ENST00000360682.6,ENST00000415361.2,ENST00000529919.1,ENST00000526357.1,ENST00000529986.1,ENST00000532245.1,ENST00000532844.1,ENST00000531014.1	chr11	57571092:57571276:57572134:57572252:57573353:57573507,	57572135	57572252	57572170	57572171	Frame_Shift_Ins	-	ACTT	p.R549fs
UCEC	TCGA-AP-A0LH-01	KCNK4	ENST00000539216.1,ENST00000394525.2,ENST00000422670.2	chr11	64064349:64064473:64064590:64064751:64064938:64065125,	64064591	64064751	64064613	64064614	Frame_Shift_Ins	-	A	p.T112fs
UCEC	TCGA-AX-A06H-01	CCDC88B	ENST00000492980.1,ENST00000463837.1,ENST00000494566.1,ENST00000356786.5,ENST00000494080.1	chr11	64111249:64111386:64111468:64112629:64116802:64116930,	64111469	64112629	64111912	64111913	Frame_Shift_Ins	-	T	p.L633fs
UCEC	TCGA-BG-A0LW-01	SLC22A12	ENST00000473690.1,ENST00000336464.7,ENST00000377572.1,ENST00000377574.1,ENST00000377567.2	chr11	64365987:64366111:64366279:64366395:64367147:64367362,	64366280	64366395	64366315	64366315	Frame_Shift_Del	G	-	p.G331fs
UCEC	TCGA-A5-A0G9-01	INPPL1	ENST00000298229.2,ENST00000538751.1,ENST00000541756.1,ENST00000537755.1	chr11	71942185:71942233:71942541:71942659:71943283:71943380,	71942542	71942659	71942633	71942634	Frame_Shift_Ins	-	G	p.K531fs
UCEC	TCGA-D1-A0ZO-01	SESN3	ENST00000393234.1,ENST00000536441.1,ENST00000416495.2	chr11	94918419:94918656:94922942:94923125:94924567:94924765,	94922943	94923125	94923096	94923099	Frame_Shift_Del	TAAG	-	p.Y123fs
UCEC	TCGA-AP-A05P-01	TMPRSS5	ENST00000538955.1,ENST00000544634.1,ENST00000540540.1,ENST00000299882.5,ENST00000545579.1,ENST00000544476.1	chr11	113558809:113558996:113560486:113560639:113560952:113561095,	113560487	113560639	113560542	113560542	Frame_Shift_Del	G	-	p.P435fs
UCEC	TCGA-B5-A11G-01	BUD13	ENST00000375445.3,ENST00000260210.4	chr11	116628481:116628666:116628984:116629123:116629789:116629895,	116628985	116629123	116629011	116629012	Frame_Shift_Ins	-	TC	p.D491fs
UCEC	TCGA-D1-A17H-01	TIRAP	ENST00000392678.3,ENST00000392680.2,ENST00000392679.1	chr11	126160356:126160480:126160697:126160856:126161319:126161464,126160356:126160480:126160697:126160856:126162371:126162582,	126160698	126160856	126160803	126160806	Frame_Shift_Del	CCTC	-	p.L7fs
UCEC	TCGA-E6-A1LZ-01	ARHGAP32	ENST00000526162.1	chr11	128838763:128841054:128842347:128844897:128846457:128846529,	128842348	128844897	128842887	128842890	Frame_Shift_Del	ATAA	-	p.S1158fs
UCEC	TCGA-B5-A11H-01	ATF7IP	ENST00000543189.1,ENST00000536444.1	chr12	14518662:14518761:14576842:14578407:14587270:14587357,14518662:14518761:14576842:14578407:14587273:14587357,	14576843	14578407	14578136	14578137	Frame_Shift_Del	TA	-	p.M430fs
UCEC	TCGA-BS-A0TE-01	KRT7	ENST00000331817.5,ENST00000546856.1	chr12	52632502:52632559:52635255:52635420:52636795:52636921,	52635256	52635420	52635264	52635265	Frame_Shift_Del	AG	-	p.E235fs
UCEC	TCGA-AX-A05S-01	MBD6	ENST00000355673.3,ENST00000431731.2	chr12	57918735:57918898:57919130:57920171:57920348:57920436,	57919131	57920171	57919721	57919722	Frame_Shift_Del	CT	-	p.S325fs
UCEC	TCGA-AP-A0LH-01	C12orf56	ENST00000542397.1	chr12	64668680:64668755:64669077:64669152:64678443:64678533,	64669078	64669152	64669117	64669118	Frame_Shift_Ins	-	G	p.T331fs
UCEC	TCGA-BG-A0LX-01	PARPBP	ENST00000327680.2,ENST00000412715.2,ENST00000378128.3,ENST00000358383.5,ENST00000392911.2,ENST00000417507.2	chr12	102542012:102542241:102547646:102547754:102558215:102558386,	102547647	102547754	102547674	102547674	Frame_Shift_Del	A	-	p.K58fs
UCEC	TCGA-BG-A0LX-01	PARPBP	ENST00000457614.2	chr12	102517765:102517819:102547646:102547767:102559506:102559661,	102547647	102547767	102547674	102547674	Frame_Shift_Del	A	-	p.K58fs
UCEC	TCGA-AX-A05W-01	HSP90B1	ENST00000299767.5,ENST00000548462.1	chr12	104333286:104333403:104335187:104335325:104335406:104335484,	104335188	104335325	104335315	104335319	Frame_Shift_Del	ATTAC	-	p.Y408fs
UCEC	TCGA-AX-A0J1-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.G285fs
UCEC	TCGA-B5-A0JR-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.G285fs
UCEC	TCGA-D1-A160-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.G285fs
UCEC	TCGA-AX-A06H-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.G285fs
UCEC	TCGA-A5-A0VQ-01	HPD	ENST00000289004.4,ENST00000543163.1	chr12	122277837:122277954:122281615:122281738:122284767:122284839,	122281616	122281738	122281717	122281718	Frame_Shift_Del	CT	-	p.G285fs
UCEC	TCGA-D1-A160-01	RSRC2	ENST00000527399.3,ENST00000527461.1,ENST00000433877.2,ENST00000344591.4	chr12	123003476:123003576:123005050:123005128:123005931:123005975,123003386:123003598:123005050:123005128:123005931:123005975,	123005051	123005128	123005052	123005052	Frame_Shift_Del	T	-	p.R3fs
UCEC	TCGA-EO-A1Y8-01	TPTE2	ENST00000462409.1	chr13	19999086:19999157:19999846:19999973:20004607:20004687,	19999847	19999973	19999954	19999955	Frame_Shift_Ins	-	GCGAA	p.R321fs
UCEC	TCGA-BG-A0MO-01	ZMYM2	ENST00000382871.2,ENST00000382870.3,ENST00000382874.2,ENST00000382869.3	chr13	20633586:20633702:20635192:20635364:20636985:20637111,	20635193	20635364	20635305	20635305	Frame_Shift_Del	T	-	p.T952fs
UCEC	TCGA-A5-A0GB-01	PAN3	ENST00000282391.5	chr13	28813769:28813833:28830428:28830676:28834583:28834688,	28830429	28830676	28830663	28830664	Frame_Shift_Ins	-	T	p.L213fs
UCEC	TCGA-BS-A0UM-01	LMO7	ENST00000377499.5,ENST00000465261.2,ENST00000526202.1,ENST00000321797.8,ENST00000377534.3,ENST00000341547.4,ENST00000357063.3,ENST00000525914.1,ENST00000447038.1	chr13	76414526:76414631:76415244:76415337:76415763:76416119,	76415245	76415337	76415307	76415308	Frame_Shift_Del	AG	-	p.N986fs
UCEC	TCGA-B5-A11R-01	PNN	ENST00000557680.1,ENST00000216832.4,ENST00000554902.1	chr14	39648294:39648450:39648527:39648666:39649706:39649880,	39648528	39648666	39648531	39648531	Frame_Shift_Del	G	-	p.E220fs
UCEC	TCGA-A5-A0GB-01	MIS18BP1	ENST00000310806.4,ENST00000470424.1	chr14	45673039:45673415:45673601:45673656:45675285:45675373,	45673602	45673656	45673600	45673610	Frame_Shift_Del	GTGTATTACCT	-	p.D1099fs
UCEC	TCGA-B5-A0K4-01	MAPK1IP1L	ENST00000395468.4	chr14	55528397:55528419:55529335:55530043:55531333:55531388,	55529336	55530043	55529627	55529648	Frame_Shift_Del	GCCCCAACTGTGCCGGGCCCTG	-	p.T106fs
UCEC	TCGA-BK-A13C-01	SPTB	ENST00000553938.1	chr14	65216698:65216872:65218928:65219033:65220254:65220394,	65218929	65219033	65219006	65219007	Frame_Shift_Ins	-	CTCCT	p.E995fs
UCEC	TCGA-BS-A0UA-01	RAB15	ENST00000585059.1,ENST00000533601.2,ENST00000267512.5,ENST00000554593.1,ENST00000436278.2,ENST00000426039.3	chr14	65417791:65417869:65418320:65418381:65419228:65419289,	65418321	65418381	65418360	65418361	Frame_Shift_Del	TC	-	p.R69fs
UCEC	TCGA-AP-A0LH-01	DNAL1	ENST00000554871.1,ENST00000553645.2,ENST00000540526.1,ENST00000554339.1,ENST00000311089.3	chr14	74153961:74154088:74156077:74156218:74162604:74162645,	74156078	74156218	74156093	74156094	Frame_Shift_Ins	-	G	p.A137fs
UCEC	TCGA-AP-A054-01	MLH3	ENST00000553713.1,ENST00000556740.1,ENST00000355774.2,ENST00000238662.7,ENST00000380968.2	chr14	75505042:75505115:75506613:75506718:75508317:75508403,	75506614	75506718	75506617	75506618	Frame_Shift_Ins	-	ATTGAATG	p.M1189fs
UCEC	TCGA-AX-A1C8-01	GOLGA5	ENST00000355976.2,ENST00000163416.2	chr14	93277895:93278099:93282595:93282766:93286052:93286181,	93282596	93282766	93282627	93282627	Frame_Shift_Del	A	-	p.G452fs
UCEC	TCGA-D1-A160-01	SERPINA11	ENST00000334708.3	chr14	94909414:94909562:94912667:94912941:94914468:94914597,	94912668	94912941	94912803	94912804	Frame_Shift_Ins	-	A	p.C261fs
UCEC	TCGA-BG-A0LX-01	CCNK	ENST00000389879.5,ENST00000553865.1	chr14	99969947:99969981:99973412:99973484:99976493:99977851,	99973413	99973484	99973474	99973474	Frame_Shift_Del	C	-	p.P370fs
UCEC	TCGA-AP-A0LG-01	EVL	ENST00000554031.1,ENST00000402714.2,ENST00000553694.1,ENST00000554045.1,ENST00000392920.3	chr14	100603914:100603981:100604076:100604139:100607516:100607566,	100604077	100604139	100604092	100604092	Frame_Shift_Del	A	-	p.K350fs
UCEC	TCGA-AX-A05S-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000429436.2	chr14	103932050:103932130:103932308:103932428:103932679:103932779,	103932309	103932428	103932313	103932314	Frame_Shift_Ins	-	GA	p.R265fs
UCEC	TCGA-A5-A0GW-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000429436.2	chr14	103932050:103932130:103932308:103932428:103932679:103932779,	103932309	103932428	103932314	103932315	Frame_Shift_Del	GA	-	p.R264fs
UCEC	TCGA-B5-A11H-01	MARK3	ENST00000303622.9,ENST00000554627.1,ENST00000335102.5,ENST00000553942.1,ENST00000416682.2,ENST00000216288.7,ENST00000429436.2	chr14	103932050:103932130:103932308:103932428:103932679:103932779,	103932309	103932428	103932314	103932315	Frame_Shift_Del	GA	-	p.R264fs
UCEC	TCGA-AX-A05Y-01	EIF3J	ENST00000558353.1	chr15	44852446:44852520:44853215:44853940:44855148:44855227,	44853216	44853940	44853344	44853348	Frame_Shift_Del	GTGAC	-	p.M258fs
UCEC	TCGA-D1-A0ZO-01	SHF	ENST00000290894.8	chr15	45470362:45470504:45490969:45491318:45492924:45493069,	45490970	45491318	45491044	45491045	Frame_Shift_Del	TC	-	p.K77fs
UCEC	TCGA-AP-A0LM-01	LIPC	ENST00000356113.6,ENST00000433326.2,ENST00000299022.5	chr15	58853062:58853180:58855703:58855922:58860914:58861072,	58855704	58855922	58855922	58855922	Frame_Shift_Del	G	-	p.R463fs
UCEC	TCGA-AX-A05S-01	SLTM	ENST00000492526.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1	chr15	59181628:59181753:59182479:59182660:59185095:59185258,	59182480	59182660	59182564	59182565	Frame_Shift_Del	CT	-	p.E665fs
UCEC	TCGA-A5-A0GI-01	SLTM	ENST00000249736.7,ENST00000497088.1,ENST00000492526.1,ENST00000473359.1,ENST00000536328.1,ENST00000380516.2,ENST00000432750.1,ENST00000557924.1,ENST00000558756.1	chr15	59186387:59186392:59186631:59186781:59189313:59189319,	59186632	59186781	59186698	59186699	Frame_Shift_Del	CT	-	p.E437fs
UCEC	TCGA-AP-A0LH-01	BNIP2	ENST00000267859.3,ENST00000415213.2,ENST00000439052.1,ENST00000607373.1,ENST00000448414.1	chr15	59961487:59961561:59963381:59963513:59964835:59964938,	59963382	59963513	59963500	59963501	Frame_Shift_Ins	-	G	p.T317fs
UCEC	TCGA-D1-A174-01	FES	ENST00000496379.1,ENST00000394302.1,ENST00000414248.2,ENST00000450438.2,ENST00000444422.2	chr15	91433636:91433714:91434783:91434906:91435287:91435341,	91434784	91434906	91434851	91434851	Frame_Shift_Del	C	-	p.Q534fs
UCEC	TCGA-D1-A160-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670282	99670283	Frame_Shift_Ins	-	GA	p.E576fs
UCEC	TCGA-B5-A11U-01	SYNM	ENST00000558420.1,ENST00000560674.1,ENST00000328642.7	chr15	99666926:99666997:99669571:99672018:99672954:99675788,	99669572	99672018	99670283	99670284	Frame_Shift_Del	GA	-	p.E575fs
UCEC	TCGA-B5-A11G-01	AXIN1	ENST00000354866.3,ENST00000461023.1,ENST00000262320.3	chr16	343487:343718:347055:347226:347721:348251,	347056	347226	347220	347221	Frame_Shift_Ins	-	T	p.V598fs
UCEC	TCGA-D1-A160-01	CHTF18	ENST00000262315.9,ENST00000461268.1,ENST00000471202.1,ENST00000464728.1,ENST00000317063.6,ENST00000455171.2	chr16	844141:844201:845131:845356:845684:845720,	845132	845356	845185	845186	Frame_Shift_Del	TG	-	p.V671fs
UCEC	TCGA-B5-A11Y-01	ZNF75A	ENST00000572999.1,ENST00000574298.1	chr16	3362676:3362768:3363048:3363175:3366911:3366924,	3363049	3363175	3363154	3363155	Frame_Shift_Del	TA	-	p.Y27fs
UCEC	TCGA-AP-A0LH-01	ABCC6	ENST00000205557.7,ENST00000456970.2	chr16	16248484:16248651:16248729:16248888:16251519:16251666,	16248730	16248888	16248841	16248842	Frame_Shift_Ins	-	G	p.G1311fs
UCEC	TCGA-A5-A0GI-01	USP31	ENST00000219689.7	chr16	23083365:23083518:23085042:23085201:23091266:23091492,	23085043	23085201	23085182	23085183	Frame_Shift_Del	CA	-	p.V732fs
UCEC	TCGA-B5-A11E-01	TGFB1I1	ENST00000568142.2,ENST00000562566.1,ENST00000564804.1,ENST00000394863.3,ENST00000569703.1,ENST00000565454.1,ENST00000361773.3,ENST00000394858.2,ENST00000567607.1,ENST00000562165.1	chr16	31484761:31484877:31485002:31485055:31485472:31485560,31484761:31484877:31485002:31485055:31485155:31485293,	31485003	31485055	31485039	31485039	Frame_Shift_Del	A	-	p.K56fs
UCEC	TCGA-B5-A11E-01	TGFB1I1	ENST00000564176.1	chr16	31484761:31484877:31485002:31485298:31485472:31485560,	31485003	31485298	31485039	31485039	Frame_Shift_Del	A	-	p.K56fs
UCEC	TCGA-BS-A0UF-01	ZNF720	ENST00000529515.1,ENST00000530881.1,ENST00000529943.2,ENST00000534277.1,ENST00000316491.9	chr16	31733946:31734073:31734578:31734674:31765086:31765177,	31734579	31734674	31734636	31734636	Frame_Shift_Del	G	-	p.W63fs
UCEC	TCGA-B5-A0JV-01	NLRC5	ENST00000534927.1,ENST00000262510.6,ENST00000540182.1,ENST00000545081.1,ENST00000537056.1,ENST00000538453.1,ENST00000308149.7,ENST00000539144.1,ENST00000436936.1	chr16	57111207:57111291:57111630:57111714:57111854:57111932,	57111631	57111714	57111676	57111677	Frame_Shift_Del	AG	-	p.E1656fs
UCEC	TCGA-AP-A0LH-01	CDH16	ENST00000568698.1,ENST00000567269.1,ENST00000570262.1,ENST00000568632.1,ENST00000394055.3,ENST00000299752.4,ENST00000565796.1	chr16	66942035:66942392:66943169:66943286:66943888:66943996,	66943170	66943286	66943276	66943277	Frame_Shift_Ins	-	C	p.C762fs
UCEC	TCGA-B5-A11X-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67644787	67644787	Frame_Shift_Del	A	-	p.G19fs
UCEC	TCGA-AX-A05T-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645502	67645506	Frame_Shift_Del	AAATT	-	p.I257fs
UCEC	TCGA-AX-A06H-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67646012	67646013	Frame_Shift_Ins	-	AC	p.T318fs
UCEC	TCGA-BG-A0M4-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67646012	67646013	Frame_Shift_Ins	-	AC	p.T318fs
UCEC	TCGA-A5-A0GW-01	CTCF	ENST00000264010.4	chr16	67644726:67645516:67645853:67646024:67650647:67650781,	67645854	67646024	67646013	67646014	Frame_Shift_Del	AC	-	p.T317fs
UCEC	TCGA-D1-A161-01	CTCF	ENST00000264010.4,ENST00000401394.1	chr16	67650647:67650781:67654599:67654720:67655344:67655494,	67654600	67654720	67654681	67654682	Frame_Shift_Ins	-	GT	p.D390fs
UCEC	TCGA-AX-A060-01	PLA2G15	ENST00000219345.5	chr16	68289184:68289283:68289668:68289893:68293048:68293077,	68289669	68289893	68289816	68289817	Frame_Shift_Ins	-	C	p.K218fs
UCEC	TCGA-AX-A060-01	PLA2G15	ENST00000413021.2,ENST00000564827.2,ENST00000566188.1	chr16	68289184:68289283:68289793:68289893:68293048:68293077,	68289794	68289893	68289816	68289817	Frame_Shift_Ins	-	C	p.K218fs
UCEC	TCGA-AX-A060-01	PLA2G15	ENST00000568082.1	chr16	68289184:68289283:68289608:68289893:68293048:68293077,	68289609	68289893	68289816	68289817	Frame_Shift_Ins	-	C	p.K218fs
UCEC	TCGA-A5-A0VO-01	CDH1	ENST00000566510.1,ENST00000562836.1,ENST00000261769.5,ENST00000422392.2	chr16	68849417:68849662:68853182:68853328:68855903:68856128,	68853183	68853328	68853328	68853328	Frame_Shift_Del	G	-	p.G571fs
UCEC	TCGA-EO-A1Y5-01	TERF2	ENST00000603068.1,ENST00000569584.2,ENST00000254942.3,ENST00000566750.1	chr16	69402278:69402385:69404385:69404532:69406171:69406185,	69404386	69404532	69404410	69404410	Frame_Shift_Del	A	-	p.D230fs
UCEC	TCGA-AP-A054-01	NFAT5	ENST00000354436.2,ENST00000432919.1,ENST00000567239.1	chr16	69660305:69660431:69680930:69681489:69687138:69687331,	69680931	69681489	69681398	69681399	Frame_Shift_Ins	-	AT	p.F243fs
UCEC	TCGA-A5-A0GV-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72827610	72827611	Frame_Shift_Ins	-	A	p.Q2990fs
UCEC	TCGA-AP-A0LD-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828912	72828913	Frame_Shift_Del	GC	-	p.Q2557fs
UCEC	TCGA-AX-A063-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72828912	72828913	Frame_Shift_Del	GC	-	p.Q2557fs
UCEC	TCGA-D1-A16I-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831055	72831079	Frame_Shift_Del	TGGGACCTGAACCTGAGCCTTCAGA	-	p.L1835fs
UCEC	TCGA-BS-A0UA-01	ZFHX3	ENST00000268489.5,ENST00000397992.5	chr16	72816783:72822747:72827153:72832613:72833925:72834028,	72827154	72832613	72831719	72831720	Frame_Shift_Ins	-	G	p.Q1621fs
UCEC	TCGA-AX-A063-01	ZC3H18	ENST00000301011.5,ENST00000452588.2,ENST00000564161.1	chr16	88675341:88675459:88677675:88677944:88688604:88688796,	88677676	88677944	88677692	88677693	Frame_Shift_Del	GA	-	p.E411fs
UCEC	TCGA-AP-A0LJ-01	CTU2	ENST00000312060.5,ENST00000378384.3,ENST00000453996.2,ENST00000567949.1,ENST00000566637.1,ENST00000564584.1,ENST00000564105.1	chr16	88780054:88780186:88780543:88780635:88780790:88780894,	88780544	88780635	88780635	88780640	Frame_Shift_Del	GGTGTG	-	p.T367fs
UCEC	TCGA-BG-A0M8-01	ZNF778	ENST00000567651.1	chr16	89289564:89289691:89291126:89291210:89291962:89292039,89288499:89288591:89291126:89291210:89291962:89292039,	89291127	89291210	89291210	89291211	Frame_Shift_Ins	-	GTGA	p.E40fs
UCEC	TCGA-BK-A0CA-01	ZNF778	ENST00000567651.1	chr16	89289564:89289691:89291126:89291210:89291962:89292039,89288499:89288591:89291126:89291210:89291962:89292039,	89291127	89291210	89291210	89291211	Frame_Shift_Ins	-	GTGA	p.E40fs
UCEC	TCGA-AX-A0J1-01	CHD3	ENST00000358181.4,ENST00000330494.7,ENST00000380358.4,ENST00000452447.1	chr17	7797444:7797583:7797732:7797926:7798234:7798468,	7797733	7797926	7797818	7797818	Frame_Shift_Del	G	-	p.G447fs
UCEC	TCGA-AP-A0LH-01	ARHGAP44	ENST00000544416.2,ENST00000262444.9,ENST00000340825.3,ENST00000580768.1,ENST00000379672.5	chr17	12847385:12847513:12852456:12852568:12852965:12853047,	12852457	12852568	12852494	12852495	Frame_Shift_Ins	-	G	p.K301fs
UCEC	TCGA-BS-A0UF-01	MPRIP	ENST00000341712.4,ENST00000395811.5,ENST00000395804.3	chr17	17045943:17046079:17046869:17046983:17049349:17049406,	17046870	17046983	17046898	17046899	Frame_Shift_Del	CT	-	p.L356fs
UCEC	TCGA-B5-A11H-01	SLC47A2	ENST00000467609.1	chr17	19583264:19583352:19584679:19584983:19605917:19605987,	19584680	19584983	19584860	19584863	Frame_Shift_Del	TCAT	-	p.M465fs
UCEC	TCGA-D1-A160-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20107710	20107711	Frame_Shift_Ins	-	AG	p.S119fs
UCEC	TCGA-D1-A17H-01	SPECC1	ENST00000395525.3,ENST00000395530.2,ENST00000395522.2	chr17	20013739:20013875:20107645:20109225:20130725:20130933,20059401:20059549:20107645:20109225:20130725:20130933,	20107646	20109225	20107710	20107711	Frame_Shift_Ins	-	AG	p.S119fs
UCEC	TCGA-D1-A0ZN-01	SUZ12	ENST00000322652.5	chr17	30267304:30267351:30267440:30267505:30274635:30274704,	30267441	30267505	30267462	30267465	Frame_Shift_Del	CTTA	-	p.Y117fs
UCEC	TCGA-AP-A0LI-01	LRRC37B	ENST00000583758.1,ENST00000327564.7,ENST00000341671.7,ENST00000582815.1,ENST00000543378.2,ENST00000394713.3,ENST00000584368.1	chr17	30361928:30362000:30362583:30362658:30372718:30372837,	30362584	30362658	30362658	30362659	Frame_Shift_Del	TG	-	p.L708fs
UCEC	TCGA-BS-A0UM-01	RHBDL3	ENST00000538145.1	chr17	30594920:30594944:30611677:30611836:30615810:30615971,30593195:30593319:30611677:30611836:30615810:30615971,	30611678	30611836	30611707	30611708	Frame_Shift_Del	CA	-	p.T56fs
UCEC	TCGA-AX-A1C8-01	GRB7	ENST00000394204.1,ENST00000309185.3,ENST00000309156.4,ENST00000394209.2,ENST00000394211.3,ENST00000445327.2	chr17	37901138:37901237:37901495:37901576:37901674:37901791,	37901496	37901576	37901530	37901531	Frame_Shift_Del	CA	-	p.Q350fs
UCEC	TCGA-B5-A0JY-01	KAT2A	ENST00000225916.5,ENST00000465682.1	chr17	40269695:40269832:40269924:40270035:40270314:40270421,	40269925	40270035	40270030	40270068	Frame_Shift_Del	CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG	-	p.A394fs
UCEC	TCGA-EO-A1Y5-01	SNF8	ENST00000507302.2	chr17	47014381:47014486:47014642:47014653:47018285:47018424,	47014643	47014653	47014652	47014652	Frame_Shift_Del	T	-	p.G83fs
UCEC	TCGA-D1-A17A-01	CACNA1G	ENST00000354983.4,ENST00000507336.1,ENST00000359106.5	chr17	48696015:48696369:48697043:48697187:48701267:48701436,48696015:48696369:48697043:48697187:48699020:48699155,	48697044	48697187	48697144	48697166	Frame_Shift_Del	CTGCCTTCCCTTCTGCCCCCAGC	-	p.A1962fs
UCEC	TCGA-BS-A0V8-01	DDX5	ENST00000225792.5,ENST00000581693.1,ENST00000578804.1,ENST00000540698.2,ENST00000450599.2,ENST00000578758.1	chr17	62496302:62496444:62496666:62496891:62498127:62498187,	62496667	62496891	62496727	62496742	Frame_Shift_Del	GAAGCACAGAGATAAG	-	p.L456fs
UCEC	TCGA-BS-A0V8-01	DDX5	ENST00000581230.1	chr17	62496302:62496444:62496666:62498187:62498279:62498341,	62496667	62498187	62496727	62496742	Frame_Shift_Del	GAAGCACAGAGATAAG	-	p.L456fs
UCEC	TCGA-AP-A0LH-01	PITPNC1	ENST00000581322.1,ENST00000335257.6,ENST00000299954.9	chr17	65374270:65374318:65528917:65529066:65548372:65548461,	65528918	65529066	65528935	65528936	Frame_Shift_Ins	-	T	p.Y22fs
UCEC	TCGA-A5-A0R6-01	ABCA9	ENST00000370732.2,ENST00000453985.2,ENST00000340001.4	chr17	66986977:66987098:66988315:66988407:66989156:66989225,	66988316	66988407	66988406	66988406	Frame_Shift_Del	G	-	p.P1209fs
UCEC	TCGA-AX-A06B-01	DNAH17	ENST00000389840.5,ENST00000585328.1	chr17	76475106:76475198:76475566:76475714:76476765:76476868,	76475567	76475714	76475711	76475711	Frame_Shift_Del	G	-	p.H2572fs
UCEC	TCGA-BG-A0VW-01	YES1	ENST00000314574.4,ENST00000577961.1,ENST00000584307.1	chr18	721747:724632:732833:732965:736807:736961,	732834	732965	732851	732851	Frame_Shift_Del	C	-	p.G469fs
UCEC	TCGA-BS-A0UJ-01	SMCHD1	ENST00000261598.8,ENST00000320876.6,ENST00000583344.1,ENST00000584897.1,ENST00000577880.1	chr18	2760649:2760737:2762102:2762234:2763634:2763787,	2762103	2762234	2762176	2762177	Frame_Shift_Ins	-	A	p.N1504fs
UCEC	TCGA-B5-A0K9-01	RNMT	ENST00000588457.1,ENST00000535051.1	chr18	13754112:13754146:13759940:13760207:13762037:13762074,	13759941	13760207	13759960	13759961	Frame_Shift_Ins	-	T	p.E472fs
UCEC	TCGA-D1-A1NX-01	CABYR	ENST00000581397.1,ENST00000399496.3,ENST00000399499.1	chr18	21723323:21723377:21735664:21736006:21739435:21739626,	21735665	21736006	21735947	21735950	Frame_Shift_Del	TCTC	-	p.V161fs
UCEC	TCGA-D1-A1NX-01	CABYR	ENST00000463087.1	chr18	21723323:21723377:21735664:21736963:21739435:21739626,	21735665	21736963	21735947	21735950	Frame_Shift_Del	TCTC	-	p.V161fs
UCEC	TCGA-AP-A0LP-01	SMAD2	ENST00000356825.4,ENST00000586040.1,ENST00000591214.1,ENST00000402690.2,ENST00000262160.6	chr18	45377644:45377698:45391429:45391504:45394693:45394828,	45391430	45391504	45391500	45391501	Frame_Shift_Ins	-	G	p.P221fs
UCEC	TCGA-B5-A11J-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
UCEC	TCGA-AX-A060-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
UCEC	TCGA-A5-A0GI-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
UCEC	TCGA-B5-A11G-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
UCEC	TCGA-A5-A0GH-01	ALPK2	ENST00000361673.3	chr18	56205371:56205456:56246045:56247780:56274553:56274671,	56246046	56247780	56246440	56246440	Frame_Shift_Del	T	-	p.K523fs
UCEC	TCGA-B5-A0K9-01	SAFB	ENST00000589863.1,ENST00000538656.1,ENST00000592224.1	chr19	5657335:5657358:5661531:5661819:5664032:5664147,	5661532	5661819	5661612	5661613	Frame_Shift_Del	GA	-	p.R651fs
UCEC	TCGA-B5-A0K9-01	SAFB	ENST00000589006.1	chr19	5657335:5657358:5661498:5661819:5664032:5664147,	5661499	5661819	5661612	5661613	Frame_Shift_Del	GA	-	p.R651fs
UCEC	TCGA-B5-A0K9-01	SAFB	ENST00000454510.1,ENST00000588852.1,ENST00000433404.1,ENST00000292123.5	chr19	5657335:5657358:5661528:5661819:5664032:5664147,	5661529	5661819	5661612	5661613	Frame_Shift_Del	GA	-	p.R651fs
UCEC	TCGA-AP-A0LH-01	RPS28	ENST00000600659.2	chr19	8386383:8386453:8386539:8386587:8386836:8386885,	8386540	8386587	8386556	8386557	Frame_Shift_Ins	-	C	p.R20fs
UCEC	TCGA-AP-A051-01	ZNF562	ENST00000453792.2	chr19	9764433:9764557:9768684:9768811:9770054:9770143,9767222:9767329:9768684:9768811:9770054:9770143,9767222:9767329:9768684:9768811:9771395:9771497,9767222:9767329:9768684:9768811:9785690:9785720,	9768685	9768811	9768737	9768737	Frame_Shift_Del	T	-	p.K63fs
UCEC	TCGA-BS-A0TE-01	KEAP1	ENST00000393623.2,ENST00000171111.5	chr19	10597393:10597494:10599867:10600044:10602252:10602396,10597393:10597494:10599867:10600044:10600323:10600529,	10599868	10600044	10600021	10600022	Frame_Shift_Ins	-	A	p.I518fs
UCEC	TCGA-D1-A177-01	LDLR	ENST00000558013.1,ENST00000558518.1,ENST00000252444.5,ENST00000557933.1	chr19	11213339:11213462:11215895:11216276:11217240:11217363,	11215896	11216276	11216181	11216182	Frame_Shift_Ins	-	C	p.E201fs
UCEC	TCGA-D1-A103-01	PGLYRP2	ENST00000340880.4	chr19	15582700:15582911:15586348:15587419:15590121:15590246,	15586349	15587419	15586706	15586707	Frame_Shift_Ins	-	A	p.T258fs
UCEC	TCGA-BG-A0M9-01	MAST3	ENST00000262811.6,ENST00000608648.1	chr19	18232662:18232732:18233482:18233561:18234026:18234184,	18233483	18233561	18233549	18233553	Frame_Shift_Del	CTCCA	-	p.S101fs
UCEC	TCGA-B5-A0JZ-01	FKBP8	ENST00000606531.2	chr19	18642938:18643065:18643473:18643624:18644079:18644157,	18643474	18643624	18643550	18643550	Frame_Shift_Del	G	-	p.T360fs
UCEC	TCGA-B5-A0JZ-01	FKBP8	ENST00000453489.2,ENST00000222308.4,ENST00000608443.1,ENST00000601844.1,ENST00000544835.3,ENST00000597960.3,ENST00000610101.1,ENST00000596558.2	chr19	18642938:18643065:18643473:18643605:18644079:18644157,	18643474	18643605	18643550	18643550	Frame_Shift_Del	G	-	p.T360fs
UCEC	TCGA-AP-A0LH-01	TMEM161A	ENST00000587985.2	chr19	19231800:19231975:19232126:19232230:19232333:19232477,	19232127	19232230	19232225	19232226	Frame_Shift_Ins	-	G	p.L269fs
UCEC	TCGA-AP-A0LH-01	TMEM161A	ENST00000587406.1	chr19	19231892:19231975:19232116:19232477:19232567:19232628,	19232117	19232477	19232225	19232226	Frame_Shift_Ins	-	G	p.L269fs
UCEC	TCGA-AP-A0LH-01	TMEM161A	ENST00000450333.2,ENST00000589448.1,ENST00000587096.1,ENST00000587583.2,ENST00000162044.9	chr19	19231892:19231975:19232116:19232230:19232333:19232477,	19232117	19232230	19232225	19232226	Frame_Shift_Ins	-	G	p.L269fs
UCEC	TCGA-B5-A11J-01	ZNF507	ENST00000311921.4,ENST00000544431.1,ENST00000355898.5	chr19	32843734:32845863:32847521:32847639:32851409:32851524,	32847522	32847639	32847540	32847541	Frame_Shift_Del	GA	-	p.E718fs
UCEC	TCGA-AP-A0LH-01	LSR	ENST00000360798.3	chr19	35753448:35753595:35757261:35757435:35757581:35757641,35749847:35749967:35757261:35757435:35757581:35757641,	35757262	35757435	35757318	35757319	Frame_Shift_Ins	-	C	p.Y328fs
UCEC	TCGA-AX-A062-01	CLASRP	ENST00000585615.1,ENST00000391953.4,ENST00000544944.2,ENST00000221455.3,ENST00000391952.3	chr19	45572323:45572382:45572459:45572506:45573279:45573362,	45572460	45572506	45572491	45572494	Frame_Shift_Del	GCAA	-	p.K621fs
UCEC	TCGA-BS-A0UF-01	FOSB	ENST00000591858.1,ENST00000592436.1,ENST00000586615.1,ENST00000592811.1,ENST00000353609.3,ENST00000589593.1	chr19	45974003:45974207:45974451:45974559:45975808:45975811,	45974452	45974559	45974503	45974503	Frame_Shift_Del	C	-	p.L167fs
UCEC	TCGA-A5-A0R8-01	JAG1	ENST00000254958.5	chr20	10639115:10639370:10644610:10644662:10653348:10653654,	10644611	10644662	10644615	10644615	Frame_Shift_Del	G	-	p.V146fs
UCEC	TCGA-AX-A05S-01	ITCH	ENST00000374864.4,ENST00000535650.1	chr20	33000320:33000445:33001547:33001685:33012285:33012331,	33001548	33001685	33001684	33001687	Frame_Shift_Del	AAGT	-	p.S159fs
UCEC	TCGA-BG-A0MQ-01	TTI1	ENST00000373447.3	chr20	36634598:36634799:36639916:36642259:36661805:36661863,	36639917	36642259	36641759	36641760	Frame_Shift_Del	CA	-	p.A154fs
UCEC	TCGA-BS-A0V8-01	EYA2	ENST00000327619.5,ENST00000357410.3,ENST00000497062.2,ENST00000317304.6	chr20	45700823:45700891:45702796:45702974:45717877:45718020,	45702797	45702974	45702842	45702843	Frame_Shift_Del	TA	-	p.Y177fs
UCEC	TCGA-BS-A0UM-01	SULF2	ENST00000361612.4,ENST00000467815.1,ENST00000359930.4,ENST00000484875.1	chr20	46295003:46295232:46300941:46301137:46305237:46305367,	46300942	46301137	46301060	46301061	Frame_Shift_Ins	-	C	p.S486fs
UCEC	TCGA-AP-A054-01	GNAS	ENST00000482112.1,ENST00000354359.7,ENST00000371085.3,ENST00000477931.1,ENST00000496934.1,ENST00000472183.1,ENST00000306090.10,ENST00000371102.4,ENST00000467321.1,ENST00000488546.1,ENST00000604005.1,ENST00000313949.7,ENST00000371095.3,ENST00000476196.1,ENST00000476935.1,ENST00000488652.1,ENST00000468895.1,ENST00000487862.1,ENST00000493958.1,ENST00000371100.4,ENST00000470512.1,ENST00000371075.3,ENST00000464788.1,ENST00000467227.1,ENST00000492907.1,ENST00000480232.1,ENST00000480975.1,ENST00000487981.1,ENST00000481039.1,ENST00000265620.7,ENST00000464624.2	chr20	57480437:57480535:57484216:57484271:57484404:57484421,	57484217	57484271	57484249	57484250	Frame_Shift_Ins	-	T	p.D832fs
UCEC	TCGA-D1-A177-01	ITSN1	ENST00000399349.1,ENST00000399338.4,ENST00000399367.3,ENST00000379960.5,ENST00000399326.3,ENST00000399352.1,ENST00000437442.2,ENST00000399353.1	chr21	35172226:35172233:35183278:35183526:35186216:35186376,	35183279	35183526	35183292	35183292	Frame_Shift_Del	A	-	p.T779fs
UCEC	TCGA-AP-A05D-01	ETS2	ENST00000360214.3,ENST00000360938.3	chr21	40191426:40191690:40193509:40193628:40194597:40195472,	40193510	40193628	40193586	40193592	Frame_Shift_Del	GACTGGA	-	p.G386fs
UCEC	TCGA-B5-A0JT-01	UMODL1	ENST00000408989.2,ENST00000400427.1,ENST00000400423.2,ENST00000408910.2,ENST00000400424.2	chr21	43541196:43541334:43542940:43543260:43546454:43546506,	43542941	43543260	43542987	43542987	Frame_Shift_Del	T	-	p.L1087fs
UCEC	TCGA-AP-A051-01	RHBDD3	ENST00000216085.7,ENST00000414672.1	chr22	29656800:29656853:29659823:29660207:29661467:29661657,	29659824	29660207	29659844	29659844	Frame_Shift_Del	C	-	p.G171fs
UCEC	TCGA-BS-A0T9-01	APOL1	ENST00000427990.1,ENST00000440669.2,ENST00000422706.1,ENST00000433768.1	chr22	36649209:36649265:36650943:36651045:36653128:36653182,	36650944	36651045	36651022	36651023	Frame_Shift_Del	GA	-	p.R24fs
UCEC	TCGA-BS-A0T9-01	APOL1	ENST00000431184.1,ENST00000397279.4,ENST00000422471.1	chr22	36649209:36649265:36650982:36651045:36653364:36653453,36649209:36649265:36650982:36651045:36653128:36653182,	36650983	36651045	36651022	36651023	Frame_Shift_Del	GA	-	p.R24fs
UCEC	TCGA-AP-A0LH-01	MPST	ENST00000397129.1,ENST00000429360.2	chr22	37415838:37415913:37420232:37420851:37425256:37425835,	37420233	37420851	37420784	37420785	Frame_Shift_Ins	-	C	p.R196fs
UCEC	TCGA-D1-A0ZU-01	BAIAP2L2	ENST00000428572.1	chr22	38481171:38481382:38482248:38482456:38483130:38483271,	38482249	38482456	38482353	38482394	Frame_Shift_Del	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	p.T441fs
UCEC	TCGA-A5-A0R8-01	TNRC6B	ENST00000335727.9	chr22	40657835:40658177:40660691:40663040:40666125:40666284,40657835:40658177:40660691:40663040:40669428:40669604,	40660692	40663040	40662003	40662006	Frame_Shift_Del	GTCG	-	p.S592fs
UCEC	TCGA-B5-A0K9-01	MEI1	ENST00000484966.1	chr22	42177831:42177849:42180342:42180424:42189832:42189914,	42180343	42180424	42180355	42180356	Frame_Shift_Del	CT	-	p.S1035fs
UCEC	TCGA-AX-A063-01	CRELD2	ENST00000403427.3,ENST00000483652.1,ENST00000328268.4,ENST00000482956.1,ENST00000450207.1,ENST00000407217.3	chr22	50313803:50313895:50315232:50315409:50316259:50316355,	50315233	50315409	50315313	50315313	Frame_Shift_Del	T	-	p.C166fs
UCEC	TCGA-AP-A1DQ-01	PLXNB2	ENST00000359337.4,ENST00000449103.1	chr22	50720358:50720510:50720612:50720742:50721139:50721309,	50720613	50720742	50720611	50720624	Frame_Shift_Del	GGACTGACCGTCAT	-	p.M1038fs
UCEC	TCGA-BS-A0TA-01	SHROOM2	ENST00000418909.2,ENST00000380913.3,ENST00000452575.1	chrX	9900214:9900910:9905173:9905725:9907234:9907406,	9905174	9905725	9905292	9905296	Frame_Shift_Del	CCTGC	-	p.L1238fs
UCEC	TCGA-BG-A0RY-01	PRPS2	ENST00000398491.2,ENST00000380668.5	chrX	12827352:12827451:12828140:12828265:12837625:12837799,	12828141	12828265	12828230	12828231	Frame_Shift_Ins	-	ATCATTG	p.V170fs
UCEC	TCGA-B5-A0JR-01	RPS6KA3	ENST00000379548.4,ENST00000438357.1,ENST00000540702.1,ENST00000457145.1,ENST00000544447.1,ENST00000379565.3,ENST00000492128.1	chrX	20213182:20213263:20222139:20222221:20227405:20227522,	20222140	20222221	20222141	20222141	Frame_Shift_Del	T	-	p.V109fs
UCEC	TCGA-BG-A0MQ-01	USP9X	ENST00000462850.1,ENST00000324545.8,ENST00000378308.2	chrX	41055503:41055612:41055844:41055991:41056616:41056763,	41055845	41055991	41055854	41055855	Frame_Shift_Del	AG	-	p.R1368fs
UCEC	TCGA-AX-A060-01	USP9X	ENST00000462850.1,ENST00000324545.8,ENST00000378308.2	chrX	41055503:41055612:41055844:41055991:41056616:41056763,	41055845	41055991	41055854	41055855	Frame_Shift_Del	AG	-	p.R1368fs
UCEC	TCGA-B5-A11R-01	DDX3X	ENST00000399959.2,ENST00000457138.2,ENST00000478993.1	chrX	41206111:41206265:41206564:41206704:41206892:41207168,	41206565	41206704	41206602	41206612	Frame_Shift_Del	CGACAAAGTAG	-	p.Q604fs
UCEC	TCGA-A5-A0R6-01	KDM6A	ENST00000377967.4,ENST00000382899.4,ENST00000414389.1,ENST00000543216.1,ENST00000433797.1,ENST00000536777.1	chrX	44937644:44937750:44938390:44938596:44941820:44941885,	44938391	44938596	44938474	44938502	Frame_Shift_Del	GCAGATGAAAACTGGGATCCCACTGGAAC	-	p.A1008fs
UCEC	TCGA-D1-A15Z-01	CFP	ENST00000480317.1	chrX	47487520:47487676:47487874:47487952:47488922:47489044,	47487875	47487952	47487912	47487913	Frame_Shift_Ins	-	G	p.S89fs
UCEC	TCGA-AX-A05S-01	CFP	ENST00000480317.1	chrX	47487520:47487676:47487874:47487952:47488922:47489044,	47487875	47487952	47487912	47487913	Frame_Shift_Ins	-	G	p.S89fs
UCEC	TCGA-AP-A0LT-01	PQBP1	ENST00000465859.1	chrX	48759232:48759319:48759495:48759794:48760008:48760070,	48759496	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.E154fs
UCEC	TCGA-AP-A0LT-01	PQBP1	ENST00000443648.1,ENST00000447146.2,ENST00000473764.1,ENST00000396763.1,ENST00000477997.1,ENST00000474671.1,ENST00000376563.1,ENST00000218224.4	chrX	48759232:48759319:48759509:48759794:48760008:48760070,	48759510	48759794	48759668	48759669	Frame_Shift_Del	AG	-	p.E154fs
UCEC	TCGA-A5-A0GW-01	KDM5C	ENST00000375383.3,ENST00000404049.3,ENST00000452825.3,ENST00000375401.3,ENST00000375379.3	chrX	53222963:53223033:53223320:53223920:53224112:53224250,	53223321	53223920	53223716	53223717	Frame_Shift_Del	AC	-	p.V1216fs
UCEC	TCGA-AP-A05A-01	MAGT1	ENST00000476168.1,ENST00000358075.6	chrX	77112229:77112370:77112853:77112994:77126304:77126422,	77112854	77112994	77112976	77112980	Frame_Shift_Del	GAGCT	-	p.A168fs
UCEC	TCGA-D1-A17M-01	DRP2	ENST00000402866.1,ENST00000395209.3,ENST00000541709.1,ENST00000538510.1	chrX	100509413:100509550:100509847:100509913:100510172:100510238,	100509848	100509913	100509879	100509880	Frame_Shift_Ins	-	AC	p.S719fs
UCEC	TCGA-A5-A0GN-01	MORC4	ENST00000355610.4,ENST00000535534.1,ENST00000255495.7	chrX	106205241:106205340:106219813:106219914:106221309:106221429,	106219814	106219914	106219851	106219852	Frame_Shift_Ins	-	G	p.Y373fs
UCEC	TCGA-AX-A06H-01	VSIG1	ENST00000217957.5,ENST00000415430.3	chrX	107316025:107316062:107316479:107316599:107319306:107319448,	107316480	107316599	107316575	107316575	Frame_Shift_Del	T	-	p.C222fs
UCEC	TCGA-AX-A060-01	RBMX	ENST00000464781.1,ENST00000568578.1,ENST00000567262.1,ENST00000562646.1,ENST00000431446.3,ENST00000570135.1,ENST00000320676.7	chrX	135961175:135961282:135961477:135961612:135962755:135962881,	135961478	135961612	135961586	135961589	Frame_Shift_Del	TGTT	-	p.M1fs
UCEC	TCGA-B5-A0K2-01	ZNF185	ENST00000370270.2,ENST00000318529.8,ENST00000535861.1,ENST00000324823.6,ENST00000449285.2,ENST00000370268.4,ENST00000539731.1,ENST00000426821.2,ENST00000454925.1,ENST00000318504.7	chrX	152113810:152114008:152128242:152128440:152132382:152132493,	152128243	152128440	152128422	152128423	Frame_Shift_Del	GA	-	p.S531fs
UCEC	TCGA-B5-A0K2-01	ZNF185	ENST00000436731.2	chrX	152113810:152114008:152128242:152128481:152132382:152132493,	152128243	152128481	152128422	152128423	Frame_Shift_Del	GA	-	p.S531fs
UCS	TCGA-N9-A4Q8-01	RRM1	ENST00000423050.2,ENST00000533349.1	chr11	4116081:4116261:4123222:4123311:4127275:4127377,4116081:4116261:4123222:4123311:4128664:4128710,	4123223	4123311	4123271	4123272	Frame_Shift_Del	AG	-	p.23_23del
UCS	TCGA-N9-A4Q8-01	RPH3A	ENST00000551052.1	chr12	113274295:113274307:113285500:113285647:113303218:113303348,113266123:113266194:113285500:113285647:113303218:113303237,	113285501	113285647	113285511	113285515	Frame_Shift_Del	GGCTG	-	p.31_33del
UCS	TCGA-N5-A4RV-01	DPP4	ENST00000490286.1,ENST00000494507.1,ENST00000360534.3,ENST00000434918.2,ENST00000491591.1	chr2	162862254:162862319:162865071:162865171:162865750:162865805,	162865072	162865171	162865080	162865089	Frame_Shift_Del	TCCCACCGGG	-	p.657_660del
UCS	TCGA-ND-A4W6-01	KLF6	ENST00000497571.1	chr10	3821741:3821782:3822297:3822421:3823986:3824243,3821741:3821782:3822297:3822421:3823832:3824406,	3822298	3822421	3822356	3822356	Frame_Shift_Del	T	-	p.T248fs
UCS	TCGA-N9-A4Q3-01	USP9X	ENST00000462850.1,ENST00000324545.8,ENST00000378308.2	chrX	41055503:41055612:41055844:41055991:41056616:41056763,	41055845	41055991	41055894	41055895	Frame_Shift_Ins	-	A	p.L1379fs
UCS	TCGA-NA-A4QY-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000331029.7,ENST00000332035.6,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29694722:29694885:29695223:29695321:29695588:29695841,	29695224	29695321	29695296	29695296	Frame_Shift_Del	C	-	p.F556fs
UCS	TCGA-NF-A4X2-01	PLEKHA4	ENST00000355496.5	chr19	49360678:49360753:49362116:49362396:49362725:49362941,49357473:49357521:49362116:49362396:49362725:49362941,	49362117	49362396	49362194	49362200	Frame_Shift_Del	GGCGGGG	-	p.297_299del
UCS	TCGA-NF-A4X2-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000389793.2	chr1	235952000:235952145:235954998:235955425:235956802:235956912,	235954999	235955425	235955054	235955055	Frame_Shift_Ins	-	TTTT	p.K1496fs
UCS	TCGA-NF-A4X2-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670243	151670244	Frame_Shift_Ins	-	T	p.P239fs
UCS	TCGA-NF-A4X2-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96019229:96019421:96021212:96021896:96024095:96024389,	96021213	96021896	96021235	96021245	Frame_Shift_Del	CCCCCATCACG	-	p.802_805del
UCS	TCGA-N5-A4RM-01	SPEN	ENST00000438066.1	chr1	16199310:16199631:16202696:16203173:16235815:16235976,16199996:16200890:16202696:16203173:16235815:16235976,	16202697	16203173	16202965	16202978	Frame_Shift_Del	ACCCGGGAGGTACG	-	p.224_229del
UCS	TCGA-N8-A4PM-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579324	7579325	Frame_Shift_Del	AG	-	p.121_122del
UCS	TCGA-N8-A4PM-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169997024	169997025	Frame_Shift_Ins	-	G	p.P4380fs
UCS	TCGA-N5-A4RJ-01	CUL9	ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43154697:43154833:43154983:43155177:43155450:43155472,	43154984	43155177	43155158	43155159	Frame_Shift_Del	TT	-	p.521_521del
UCS	TCGA-ND-A4WC-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602811.1,ENST00000581941.1,ENST00000602537.1	chr17	11924292:11924318:11998891:11999011:12013691:12013743,11958205:11958308:11998891:11999011:12011106:12011226,11984672:11984847:11998891:11999011:12011106:12011226,	11998892	11999011	11998922	11998923	Frame_Shift_Ins	-	A	p.Q142fs
UCS	TCGA-ND-A4WC-01	GINS1	ENST00000262460.4	chr20	25400319:25400441:25405846:25405963:25422337:25422412,25398740:25398831:25405846:25405963:25422337:25422412,	25405847	25405963	25405867	25405868	Frame_Shift_Ins	-	A	p.Y117fs
UCS	TCGA-ND-A4WC-01	HSPD1	ENST00000486181.1,ENST00000388968.3,ENST00000452200.1,ENST00000345042.2	chr2	198358917:198358974:198359380:198359476:198360017:198360100,	198359381	198359476	198359410	198359411	Frame_Shift_Ins	-	T	p.V193fs
UCS	TCGA-ND-A4WC-01	HSPD1	ENST00000430176.1	chr2	198358871:198358974:198359386:198359476:198360017:198360100,	198359387	198359476	198359410	198359411	Frame_Shift_Ins	-	T	p.V193fs
UCS	TCGA-ND-A4WC-01	ATAD2B	ENST00000238789.5,ENST00000381024.4,ENST00000474583.1	chr2	23977516:23977644:23980287:23980971:23985078:23985216,	23980288	23980971	23980888	23980889	Frame_Shift_Ins	-	T	p.D1160fs
UCS	TCGA-ND-A4WC-01	ZNF608	ENST00000504926.1,ENST00000306315.5	chr5	123979936:123980354:123982371:123984826:123985302:123985390,	123982372	123984826	123984088	123984089	Frame_Shift_Ins	-	T	p.K663fs
UCS	TCGA-NF-A5CP-01	CHMP2A	ENST00000312547.2,ENST00000600118.1,ENST00000596708.1,ENST00000601220.1	chr19	59063421:59063552:59063625:59063805:59065411:59065464,	59063626	59063805	59063715	59063716	Frame_Shift_Del	AC	-	p.87_87del
UCS	TCGA-NF-A5CP-01	MARCH7	ENST00000409591.1,ENST00000259050.4,ENST00000409175.1	chr2	160599571:160599764:160604315:160605414:160608912:160609036,160602280:160602448:160604315:160605414:160608912:160609036,	160604316	160605414	160604437	160604450	Frame_Shift_Del	ACTAAGTTCTAGGG	-	p.212_216del
UCS	TCGA-N8-A4PP-01	TBXAS1	ENST00000448866.1,ENST00000458722.1,ENST00000425687.1,ENST00000436047.2,ENST00000422328.1,ENST00000336425.5,ENST00000416849.2,ENST00000263552.6	chr7	139715522:139715660:139717470:139717633:139719824:139720079,	139717471	139717633	139717541	139717550	Frame_Shift_Del	TGCCTCGGGG	-	p.525_528del
UCS	TCGA-N6-A4V9-01	CLTC	ENST00000579456.1,ENST00000269122.3	chr17	57697303:57697534:57721636:57721844:57724758:57724808,	57721637	57721844	57721737	57721737	Frame_Shift_Del	C	-	p.A48fs
UCS	TCGA-N6-A4V9-01	CLTC	ENST00000580081.1	chr17	57697303:57697534:57721636:57721856:57724758:57724808,	57721637	57721856	57721737	57721737	Frame_Shift_Del	C	-	p.A48fs
UCS	TCGA-N6-A4VE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577134	7577134	Frame_Shift_Del	G	-	p.S269fs
UCS	TCGA-NA-A4R1-01	PFKL	ENST00000397961.2,ENST00000349048.4,ENST00000403390.1,ENST00000496824.1	chr21	45733520:45733565:45733795:45733904:45736126:45736222,	45733796	45733904	45733884	45733885	Frame_Shift_Ins	-	TG	p.M243fs
UCS	TCGA-NA-A4R1-01	LHCGR	ENST00000602369.1	chr2	48921379:48921443:48925753:48925914:48936086:48936161,	48925754	48925914	48925846	48925846	Frame_Shift_Del	T	-	p.L259fs
UCS	TCGA-NA-A4R1-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925846	48925846	Frame_Shift_Del	T	-	p.L259fs
UCS	TCGA-NA-A4R1-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124153180:124153372:124157734:124157884:124160791:124160906,	124157735	124157884	124157839	124157840	Frame_Shift_Ins	-	C	p.I1049fs
UCS	TCGA-NA-A4R1-01	SULT1B1	ENST00000512870.1	chr4	70620387:70620516:70620787:70620919:70626176:70626289,	70620788	70620919	70620807	70620807	Frame_Shift_Del	T	-	p.A44fs
UCS	TCGA-N5-A4RT-01	DSP	ENST00000379802.3	chr6	7578696:7578795:7579507:7581802:7582874:7583616,	7579508	7581802	7581043	7581043	Frame_Shift_Del	C	-	p.I1540fs
UCS	TCGA-ND-A4WA-01	TK1	ENST00000590862.1	chr17	76171006:76171031:76171130:76171250:76171609:76171699,76170782:76170869:76171130:76171250:76171609:76171699,	76171131	76171250	76171208	76171209	Frame_Shift_Del	CG	-	p.146_146del
UCS	TCGA-N7-A59B-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778803	84778803	Frame_Shift_Del	C	-	p.A243fs
UCS	TCGA-N7-A59B-01	USP1	ENST00000339950.4,ENST00000371146.1	chr1	62908829:62908990:62910408:62911100:62913011:62913182,	62910409	62911100	62910418	62910418	Frame_Shift_Del	C	-	p.N189fs
UCS	TCGA-N5-A4RN-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121663604:121663789:121668552:121668642:121671555:121671676,	121668553	121668642	121668600	121668601	Frame_Shift_Del	AG	-	p.383_383del
UCS	TCGA-N5-A4RN-01	TET2	ENST00000380013.4	chr4	106111516:106111662:106155053:106158508:106163990:106164084,106111516:106111662:106155053:106158508:106162495:106162586,	106155054	106158508	106157271	106157271	Frame_Shift_Del	T	-	p.H724fs
UCS	TCGA-N6-A4VG-01	YTHDF1	ENST00000370339.3	chr20	61827830:61828086:61833638:61835159:61845215:61845295,	61833639	61835159	61835075	61835075	Frame_Shift_Del	C	-	p.A73fs
UCS	TCGA-N5-A4RF-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645112	67645115	Frame_Shift_Del	TTGC	-	p.126_127del
UCS	TCGA-N5-A4RO-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579575	7579575	Frame_Shift_Del	G	-	p.Q38fs
UCS	TCGA-N5-A4RD-01	TIAL1	ENST00000369092.4,ENST00000489822.1,ENST00000369093.2,ENST00000436547.2,ENST00000470781.1,ENST00000497671.1,ENST00000369087.1,ENST00000495821.1	chr10	121336986:121337047:121337152:121337248:121338237:121338346,	121337153	121337248	121337193	121337194	Frame_Shift_Ins	-	T	p.N221fs
UCS	TCGA-N5-A4RD-01	CNOT6	ENST00000393356.1,ENST00000261951.4	chr5	179996109:179996340:179998229:179998432:180000987:180001269,	179998230	179998432	179998267	179998268	Frame_Shift_Del	AA	-	p.432_432del
UCS	TCGA-N8-A56S-01	DAB1	ENST00000371234.4,ENST00000371231.1,ENST00000485760.1,ENST00000371236.2	chr1	57528562:57528616:57535032:57535098:57536695:57536734,	57535033	57535098	57535038	57535038	Frame_Shift_Del	A	-	p.Y220fs
UCS	TCGA-N8-A56S-01	RFC1	ENST00000381897.1,ENST00000349703.2	chr4	39304356:39304494:39304679:39304771:39306433:39306548,	39304680	39304771	39304717	39304718	Frame_Shift_Del	TC	-	p.723_723del
UCS	TCGA-NA-A4QW-01	FAM20A	ENST00000592554.1,ENST00000590074.1,ENST00000226094.5,ENST00000592847.1	chr17	66538125:66538306:66538834:66538950:66539769:66539810,	66538835	66538950	66538939	66538955	Frame_Shift_Del	AAGTCCAGAATCCTGCA	-	p.271_275del
UCS	TCGA-NA-A4QW-01	TXN2	ENST00000411915.1	chr22	36863930:36863964:36872779:36872903:36876621:36876689,36864648:36864764:36872779:36872903:36876621:36876795,	36872780	36872903	36872876	36872876	Frame_Shift_Del	C	-	p.P98fs
UCS	TCGA-N7-A4Y0-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832391	24832391	Frame_Shift_Del	G	-	p.S1397fs
UCS	TCGA-N7-A4Y0-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717674	89717675	Frame_Shift_Ins	-	C	p.R233fs
UCS	TCGA-N7-A4Y0-01	TCF7L2	ENST00000543371.1,ENST00000545257.1,ENST00000538897.1,ENST00000536810.1,ENST00000349937.2,ENST00000355995.4,ENST00000369397.4,ENST00000534894.1,ENST00000352065.5	chr10	114799783:114799885:114900942:114901075:114903681:114903772,	114900943	114901075	114900983	114900984	Frame_Shift_Ins	-	C	p.H222fs
UCS	TCGA-N7-A4Y0-01	LARP4B	ENST00000316157.3	chr10	888871:889008:890916:890995:909682:909823,	890917	890995	890939	890939	Frame_Shift_Del	T	-	p.T163fs
UCS	TCGA-N7-A4Y0-01	RBM17	ENST00000432931.1	chr10	6131033:6131156:6139010:6139151:6143233:6143350,	6139011	6139151	6139070	6139070	Frame_Shift_Del	A	-	p.S14X
UCS	TCGA-N7-A4Y0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831290	61831290	Frame_Shift_Del	T	-	p.I3117fs
UCS	TCGA-N7-A4Y0-01	PACSIN3	ENST00000539589.1,ENST00000298838.6,ENST00000528462.1	chr11	47199974:47200038:47200444:47200581:47200709:47200776,	47200445	47200581	47200457	47200457	Frame_Shift_Del	G	-	p.P342fs
UCS	TCGA-N7-A4Y0-01	XRRA1	ENST00000531449.1,ENST00000321448.8,ENST00000340360.6	chr11	74554394:74554498:74554898:74555004:74555212:74555328,	74554899	74555004	74554923	74554923	Frame_Shift_Del	G	-	p.R701fs
UCS	TCGA-N7-A4Y0-01	CACNA1C	ENST00000399638.1,ENST00000480911.1,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2602367:2602552:2614007:2614111:2621977:2622150,	2614008	2614111	2614074	2614074	Frame_Shift_Del	T	-	p.S393fs
UCS	TCGA-N7-A4Y0-01	HDAC7	ENST00000470668.1,ENST00000548080.1,ENST00000548938.1,ENST00000380610.4,ENST00000459625.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48180367:48180486:48181494:48181592:48181827:48181947,	48181495	48181592	48181527	48181527	Frame_Shift_Del	G	-	p.M808fs
UCS	TCGA-N7-A4Y0-01	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745622	39745623	Frame_Shift_Ins	-	T	p.D544fs
UCS	TCGA-N7-A4Y0-01	MDM1	ENST00000303145.7,ENST00000545724.1,ENST00000411698.2,ENST00000430606.2	chr12	68718784:68721290:68724886:68725001:68726007:68726035,68720436:68720801:68724886:68725001:68726007:68726035,	68724887	68725001	68724964	68724964	Frame_Shift_Del	T	-	p.K19fs
UCS	TCGA-N7-A4Y0-01	POSTN	ENST00000379742.4	chr13	38143880:38143958:38144716:38144806:38145505:38145565,38143880:38143958:38144716:38144806:38151889:38151934,	38144717	38144806	38144790	38144790	Frame_Shift_Del	T	-	p.Y733fs
UCS	TCGA-N7-A4Y0-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054754	72054755	Frame_Shift_Ins	-	C	p.G55fs
UCS	TCGA-N7-A4Y0-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000561442.1,ENST00000559771.1	chr15	63824845:63824906:63829223:63829355:63845913:63845932,	63829224	63829355	63829242	63829242	Frame_Shift_Del	A	-	p.A57fs
UCS	TCGA-N7-A4Y0-01	RASGRP1	ENST00000558432.1,ENST00000310803.5,ENST00000561180.1,ENST00000539159.1	chr15	38794512:38794622:38795472:38795577:38798040:38798121,	38795473	38795577	38795505	38795505	Frame_Shift_Del	T	-	p.T466fs
UCS	TCGA-N7-A4Y0-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021241	23021242	Frame_Shift_Ins	-	T	p.K32fs
UCS	TCGA-N7-A4Y0-01	GSE1	ENST00000253458.7	chr16	85667519:85667738:85682157:85682357:85687883:85688056,	85682158	85682357	85682261	85682261	Frame_Shift_Del	C	-	p.V110fs
UCS	TCGA-N7-A4Y0-01	AARS	ENST00000261772.8,ENST00000569825.1	chr16	70287821:70287941:70288523:70288637:70289630:70289739,	70288524	70288637	70288530	70288530	Frame_Shift_Del	A	-	p.G799fs
UCS	TCGA-N7-A4Y0-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736371	Frame_Shift_Del	C	-	p.Q1875fs
UCS	TCGA-N7-A4Y0-01	ERN2	ENST00000457008.2	chr16	23707214:23707299:23711859:23712025:23713472:23713594,	23711860	23712025	23711986	23711986	Frame_Shift_Del	G	-	p.L515fs
UCS	TCGA-N7-A4Y0-01	ERN2	ENST00000562562.1	chr16	23707214:23707299:23711859:23712435:23713472:23713594,	23711860	23712435	23711986	23711986	Frame_Shift_Del	G	-	p.L515fs
UCS	TCGA-N7-A4Y0-01	KLHDC4	ENST00000568502.1,ENST00000565328.1,ENST00000562155.1	chr16	87764241:87764250:87788799:87788898:87795554:87795622,87782404:87782415:87788799:87788898:87795554:87795622,	87788800	87788898	87788830	87788830	Frame_Shift_Del	G	-	p.S114fs
UCS	TCGA-N7-A4Y0-01	KLHDC4	ENST00000566661.1	chr16	87782404:87782415:87788799:87790083:87795554:87795622,	87788800	87790083	87788830	87788830	Frame_Shift_Del	G	-	p.S114fs
UCS	TCGA-N7-A4Y0-01	RAI1	ENST00000353383.1	chr17	17627341:17627473:17696246:17701827:17707069:17707163,	17696247	17701827	17698653	17698653	Frame_Shift_Del	C	-	p.D797fs
UCS	TCGA-N7-A4Y0-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P889fs
UCS	TCGA-N7-A4Y0-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43909022:43909148:43909267:43909467:43911564:43911655,	43909268	43909467	43909340	43909340	Frame_Shift_Del	C	-	p.S2842fs
UCS	TCGA-N7-A4Y0-01	C8A	ENST00000361249.3	chr1	57372339:57372465:57373628:57373786:57378075:57378298,	57373629	57373786	57373743	57373743	Frame_Shift_Del	G	-	p.W446fs
UCS	TCGA-N7-A4Y0-01	CRTC2	ENST00000368633.1,ENST00000303569.6,ENST00000461638.2	chr1	153921741:153921860:153923735:153924142:153924493:153924738,	153923736	153924142	153923897	153923898	Frame_Shift_Ins	-	G	p.S415fs
UCS	TCGA-N7-A4Y0-01	DNAJC16	ENST00000375838.1,ENST00000375847.3,ENST00000375849.1,ENST00000475133.1	chr1	15870893:15871078:15873261:15873366:15874764:15874923,	15873262	15873366	15873320	15873321	Frame_Shift_Del	AT	-	p.273_273del
UCS	TCGA-N7-A4Y0-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000467026.1,ENST00000486937.1,ENST00000291688.1	chr21	47660724:47660931:47662715:47662845:47663378:47663636,	47662716	47662845	47662805	47662805	Frame_Shift_Del	A	-	p.K1780fs
UCS	TCGA-N7-A4Y0-01	GRB14	ENST00000488342.1,ENST00000543549.1,ENST00000263915.3	chr2	165349332:165349692:165350940:165351034:165353517:165353562,	165350941	165351034	165350964	165350964	Frame_Shift_Del	T	-	p.I485fs
UCS	TCGA-N7-A4Y0-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169997025	169997025	Frame_Shift_Del	G	-	p.P4380fs
UCS	TCGA-N7-A4Y0-01	FBXO41	ENST00000520530.2,ENST00000521871.1,ENST00000295133.5	chr2	73490340:73490436:73490805:73490958:73491065:73491181,	73490806	73490958	73490910	73490910	Frame_Shift_Del	C	-	p.N658fs
UCS	TCGA-N7-A4Y0-01	IFT122	ENST00000512814.1,ENST00000504021.1,ENST00000509522.1	chr3	129202327:129202525:129207099:129207240:129214288:129214330,	129207100	129207240	129207227	129207227	Frame_Shift_Del	A	-	p.E711fs
UCS	TCGA-N7-A4Y0-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743461	130743461	Frame_Shift_Del	G	-	p.I231fs
UCS	TCGA-N7-A4Y0-01	FBXO8	ENST00000515664.1,ENST00000503293.1,ENST00000393674.2	chr4	175158509:175158750:175160144:175160341:175162250:175162369,	175160145	175160341	175160263	175160263	Frame_Shift_Del	A	-	p.R219fs
UCS	TCGA-N7-A4Y0-01	PIK3R1	ENST00000519025.1,ENST00000520550.1,ENST00000521381.1,ENST00000336483.5,ENST00000523872.1,ENST00000521409.1,ENST00000517698.1,ENST00000320694.8,ENST00000521657.1,ENST00000274335.5,ENST00000396611.1,ENST00000518813.1	chr5	67589130:67589311:67589536:67589662:67590363:67590440,	67589537	67589662	67589589	67589595	Frame_Shift_Del	AATATAA	-	p.451_453del
UCS	TCGA-N7-A4Y0-01	IGF2R	ENST00000356956.1	chr6	160484446:160484662:160485432:160485563:160485835:160485933,	160485433	160485563	160485488	160485488	Frame_Shift_Del	G	-	p.T1314fs
UCS	TCGA-N7-A4Y0-01	POLH	ENST00000372226.1	chr6	43544110:43544177:43550052:43550193:43550743:43550843,	43550053	43550193	43550104	43550104	Frame_Shift_Del	T	-	p.C16fs
UCS	TCGA-N7-A4Y0-01	RREB1	ENST00000379933.3,ENST00000349384.6	chr6	7240670:7240835:7246656:7247454:7248743:7248878,7229229:7232140:7246656:7247454:7248743:7249457,	7246657	7247454	7247181	7247181	Frame_Shift_Del	C	-	p.K1499fs
UCS	TCGA-N7-A4Y0-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.H509fs
UCS	TCGA-N7-A4Y0-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.H509fs
UCS	TCGA-N7-A4Y0-01	ADAM32	ENST00000379907.4	chr8	39044427:39044564:39068662:39068843:39079128:39079221,	39068663	39068843	39068767	39068767	Frame_Shift_Del	A	-	p.Q386fs
UCS	TCGA-N7-A4Y0-01	SPAG11B	ENST00000297498.2	chr8	7308085:7308422:7308645:7308721:7309780:7309887,7308344:7308422:7308645:7308721:7320228:7320379,	7308646	7308721	7308689	7308690	Frame_Shift_Ins	-	G	p.S83fs
UCS	TCGA-N7-A4Y0-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.I104fs
UCS	TCGA-N7-A4Y0-01	GSR	ENST00000221130.5,ENST00000541648.1,ENST00000546342.1,ENST00000537535.1,ENST00000414019.1	chr8	30538420:30538554:30539446:30539578:30541604:30541716,	30539447	30539578	30539472	30539473	Frame_Shift_Ins	-	G	p.P420fs
UCS	TCGA-N7-A4Y0-01	AP3M2	ENST00000517865.1,ENST00000521280.1,ENST00000396926.3,ENST00000174653.3,ENST00000517922.1,ENST00000530375.1,ENST00000521899.1,ENST00000518421.1	chr8	42019798:42019936:42022588:42022674:42022944:42023078,	42022589	42022674	42022614	42022614	Frame_Shift_Del	G	-	p.Q203fs
UCS	TCGA-N7-A4Y0-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145773375	145773375	Frame_Shift_Del	G	-	p.S366fs
UCS	TCGA-N7-A4Y0-01	NCOA2	ENST00000452400.2	chr8	71053511:71053634:71056876:71057083:71060507:71060621,	71056877	71057083	71056964	71056964	Frame_Shift_Del	T	-	p.S909fs
UCS	TCGA-N7-A4Y0-01	NFX1	ENST00000379521.4,ENST00000318524.6	chr9	33290542:33290595:33294417:33295425:33301260:33301419,	33294418	33295425	33294897	33294897	Frame_Shift_Del	A	-	p.P168fs
UCS	TCGA-N5-A4RA-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579718	7579718	Frame_Shift_Del	A	-	p.P27fs
UCS	TCGA-N9-A4Q1-01	SOX5	ENST00000546136.1,ENST00000537393.1,ENST00000309359.1,ENST00000545921.1,ENST00000451604.2,ENST00000396007.2	chr12	23696144:23696318:23699249:23699358:23716191:23716337,	23699250	23699358	23699267	23699268	Frame_Shift_Ins	-	T	p.L527fs
UCS	TCGA-NG-A4VW-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336953	56336954	Frame_Shift_Ins	-	A	p.L123fs
UCS	TCGA-NG-A4VW-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266846	6266847	Frame_Shift_Ins	-	C	p.R172fs
UCS	TCGA-NG-A4VW-01	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000429779.1	chr7	2262209:2262389:2265044:2265185:2269618:2269699,	2265045	2265185	2265126	2265126	Frame_Shift_Del	C	-	p.K71fs
UCS	TCGA-N9-A4Q4-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315676	208315677	Frame_Shift_Ins	-	TC	p.Q502fs
UCS	TCGA-N9-A4Q4-01	INPP5E	ENST00000371712.3	chr9	139326930:139327038:139327407:139327527:139327606:139327629,	139327408	139327527	139327477	139327487	Frame_Shift_Del	TGGTCTTGATC	-	p.401_404del
UCS	TCGA-N5-A59E-01	CTSE	ENST00000361052.3,ENST00000360218.2	chr1	206317605:206317644:206318310:206318467:206319100:206319218,	206318311	206318467	206318413	206318414	Frame_Shift_Ins	-	GA	p.T57fs
UCS	TCGA-N5-A4RJ-01	CUL9	ENST00000515773.1,ENST00000252050.4,ENST00000372647.2	chr6	43154697:43154833:43154983:43155177:43155450:43155472,	43154984	43155177	43155158	43155159	Frame_Shift_Del	TT	-	p.L521fs
UCS	TCGA-N5-A4RJ-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736370	30736371	Frame_Shift_Ins	-	C	p.HP1875fs
UCS	TCGA-N5-A4RJ-01	ABHD17A	ENST00000250974.9,ENST00000292577.7	chr19	1877202:1877424:1877506:1877686:1879919:1880016,	1877507	1877686	1877579	1877579	Frame_Shift_Del	G	-	p.S212fs
UCS	TCGA-N5-A4RJ-01	ABHD17A	ENST00000590661.1	chr19	1877202:1877424:1877506:1877646:1879919:1880016,	1877507	1877646	1877579	1877579	Frame_Shift_Del	G	-	p.S212fs
UCS	TCGA-N5-A4RT-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
UCS	TCGA-N5-A4RN-01	SEC23IP	ENST00000543134.1,ENST00000369075.3	chr10	121663604:121663789:121668552:121668642:121671555:121671676,	121668553	121668642	121668600	121668601	Frame_Shift_Del	AG	-	p.LE383fs
UCS	TCGA-N7-A59B-01	USP10	ENST00000570191.1,ENST00000219473.7	chr16	84773914:84773975:84778238:84779279:84792321:84792413,	84778239	84779279	84778803	84778803	Frame_Shift_Del	C	-	p.A239fs
UCS	TCGA-N5-A4RM-01	SPEN	ENST00000438066.1	chr1	16199310:16199631:16202696:16203173:16235815:16235976,16199996:16200890:16202696:16203173:16235815:16235976,	16202697	16203173	16202965	16202978	Frame_Shift_Del	ACCCGGGAGGTACG	-	p.TREVR225fs
UCS	TCGA-NF-A4X2-01	LYST	ENST00000489585.1,ENST00000389794.3,ENST00000389793.2	chr1	235952000:235952145:235954998:235955425:235956802:235956912,	235954999	235955425	235955054	235955055	Frame_Shift_Ins	-	TTTT	p.N1496fs
UCS	TCGA-NF-A4X2-01	AKAP12	ENST00000253332.1,ENST00000402676.2	chr6	151646822:151647020:151669845:151674887:151676861:151677908,151626881:151627038:151669845:151674887:151676861:151677908,	151669846	151674887	151670243	151670244	Frame_Shift_Ins	-	T	p.R240fs
UCS	TCGA-NF-A4X2-01	WNK2	ENST00000395475.2,ENST00000411624.1,ENST00000356055.3,ENST00000395477.2,ENST00000349097.3,ENST00000297954.4,ENST00000427277.2,ENST00000432730.1	chr9	96019229:96019421:96021212:96021896:96024095:96024389,	96021213	96021896	96021235	96021245	Frame_Shift_Del	CCCCCATCACG	-	p.PPIT802fs
UCS	TCGA-NF-A4X2-01	SYMPK	ENST00000598329.2,ENST00000593504.1,ENST00000600237.1,ENST00000245934.7,ENST00000598155.1	chr19	46319740:46319835:46320055:46320232:46321216:46321271,	46320056	46320232	46320139	46320139	Frame_Shift_Del	G	-	p.Q1060fs
UCS	TCGA-NF-A4X2-01	PLEKHA4	ENST00000355496.5	chr19	49360678:49360753:49362116:49362396:49362725:49362941,49357473:49357521:49362116:49362396:49362725:49362941,	49362117	49362396	49362194	49362200	Frame_Shift_Del	GGCGGGG	-	p.PRR297fs
UCS	TCGA-N5-A4RA-01	TP53	ENST00000455263.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4,ENST00000604348.1	chr17	7579311:7579590:7579699:7579721:7579838:7579912,	7579700	7579721	7579718	7579718	Frame_Shift_Del	A	-	p.L26fs
UCS	TCGA-N8-A56S-01	RFC1	ENST00000381897.1,ENST00000349703.2	chr4	39304356:39304494:39304679:39304771:39306433:39306548,	39304680	39304771	39304717	39304718	Frame_Shift_Del	TC	-	p.D723fs
UCS	TCGA-N5-A4RV-01	DPP4	ENST00000490286.1,ENST00000494507.1,ENST00000360534.3,ENST00000434918.2,ENST00000491591.1	chr2	162862254:162862319:162865071:162865171:162865750:162865805,	162865072	162865171	162865080	162865089	Frame_Shift_Del	TCCCACCGGG	-	p.SRWE657fs
UCS	TCGA-QM-A5NM-01	MUC20	ENST00000436408.1	chr3	195447845:195447954:195451550:195453443:195456518:195456610,	195451551	195453443	195452664	195452664	Frame_Shift_Del	C	-	p.T226fs
UCS	TCGA-NA-A4QW-01	TXN2	ENST00000411915.1	chr22	36863930:36863964:36872779:36872903:36876621:36876689,36864648:36864764:36872779:36872903:36876621:36876795,	36872780	36872903	36872876	36872876	Frame_Shift_Del	C	-	p.G97fs
UCS	TCGA-N6-A4VE-01	TP53	ENST00000455263.2,ENST00000510385.1,ENST00000509690.1,ENST00000420246.2,ENST00000445888.2,ENST00000504290.1,ENST00000359597.4,ENST00000269305.4,ENST00000504937.1	chr17	7576852:7576926:7577018:7577155:7577498:7577608,	7577019	7577155	7577134	7577134	Frame_Shift_Del	G	-	p.N268fs
UCS	TCGA-ND-A4WC-01	ATAD2B	ENST00000238789.5,ENST00000381024.4,ENST00000474583.1	chr2	23977516:23977644:23980287:23980971:23985078:23985216,	23980288	23980971	23980888	23980889	Frame_Shift_Ins	-	T	p.*1160fs
UCS	TCGA-ND-A4WC-01	XIRP2	ENST00000295237.9,ENST00000409273.1,ENST00000409195.1	chr2	168098286:168098420:168099078:168108457:168110541:168110675,	168099079	168108457	168101562	168101563	Frame_Shift_Ins	-	A	p.LK1220fs
UCS	TCGA-ND-A4WC-01	OLA1	ENST00000428402.2	chr2	174946737:174946792:174987907:174988005:174988322:174988398,174940136:174940255:174987907:174988005:174988322:174988398,	174987908	174988005	174987962	174987963	Frame_Shift_Ins	-	T	p.G225fs
UCS	TCGA-ND-A4WC-01	HSPD1	ENST00000486181.1,ENST00000388968.3,ENST00000452200.1,ENST00000345042.2	chr2	198358917:198358974:198359380:198359476:198360017:198360100,	198359381	198359476	198359410	198359411	Frame_Shift_Ins	-	T	p.NW192fs
UCS	TCGA-ND-A4WC-01	HSPD1	ENST00000430176.1	chr2	198358871:198358974:198359386:198359476:198360017:198360100,	198359387	198359476	198359410	198359411	Frame_Shift_Ins	-	T	p.NW192fs
UCS	TCGA-ND-A4WC-01	TSPAN8	ENST00000247829.3,ENST00000552128.1,ENST00000546561.1,ENST00000393330.2	chr12	71518932:71519167:71523110:71523194:71526472:71526604,	71523111	71523194	71523156	71523157	Frame_Shift_Ins	-	T	p.I205fs
UCS	TCGA-ND-A4WC-01	MAP2K4	ENST00000353533.5,ENST00000415385.3,ENST00000602811.1,ENST00000581941.1,ENST00000602537.1	chr17	11924292:11924318:11998891:11999011:12013691:12013743,11958205:11958308:11998891:11999011:12011106:12011226,11984672:11984847:11998891:11999011:12011106:12011226,	11998892	11999011	11998922	11998923	Frame_Shift_Ins	-	A	p.K153fs
UCS	TCGA-ND-A4WC-01	GINS1	ENST00000262460.4	chr20	25400319:25400441:25405846:25405963:25422337:25422412,25398740:25398831:25405846:25405963:25422337:25422412,	25405847	25405963	25405867	25405868	Frame_Shift_Ins	-	A	p.*K117fs
UCS	TCGA-NG-A4VU-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073909	3073909	Frame_Shift_Del	G	-	p.Q12fs
UCS	TCGA-NG-A4VU-01	HCFC1R1	ENST00000573842.1,ENST00000396916.1,ENST00000573095.1	chr16	3073474:3073531:3073847:3073969:3074181:3074216,	3073848	3073969	3073909	3073909	Frame_Shift_Del	G	-	p.Q12fs
UCS	TCGA-NG-A4VU-01	PALM	ENST00000338448.5,ENST00000593172.1,ENST00000592155.1,ENST00000587513.1	chr19	736018:736078:740351:740483:746284:746373,	740352	740483	740396	740396	Frame_Shift_Del	G	-	p.G183fs
UCS	TCGA-N6-A4VF-01	AGRN	ENST00000379370.2	chr1	984615:984831:984945:985175:985282:985417,	984946	985175	985167	985168	Frame_Shift_Ins	-	C	p.A1579fs
UCS	TCGA-N9-A4Q8-01	RRM1	ENST00000423050.2,ENST00000533349.1	chr11	4116081:4116261:4123222:4123311:4127275:4127377,4116081:4116261:4123222:4123311:4128664:4128710,	4123223	4123311	4123271	4123272	Frame_Shift_Del	AG	-	p.Q23fs
UCS	TCGA-N9-A4Q8-01	RPH3A	ENST00000551052.1	chr12	113274295:113274307:113285500:113285647:113303218:113303348,113266123:113266194:113285500:113285647:113303218:113303237,	113285501	113285647	113285511	113285515	Frame_Shift_Del	GGCTG	-	p.GW32fs
UCS	TCGA-N6-A4V9-01	LGR5	ENST00000540815.2,ENST00000536515.1,ENST00000266674.5,ENST00000550851.1	chr12	71898393:71898465:71918185:71918257:71928894:71928966,	71918186	71918257	71918250	71918250	Frame_Shift_Del	A	-	p.K117fs
UCS	TCGA-ND-A4WA-01	TK1	ENST00000590862.1	chr17	76171006:76171031:76171130:76171250:76171609:76171699,76170782:76170869:76171130:76171250:76171609:76171699,	76171131	76171250	76171208	76171209	Frame_Shift_Del	CG	-	p.SV145fs
UCS	TCGA-NG-A4VW-01	CLOCK	ENST00000309964.4,ENST00000506747.1,ENST00000435527.2,ENST00000381322.1,ENST00000513440.1	chr4	56329864:56329972:56336883:56336973:56342129:56342221,	56336884	56336973	56336953	56336954	Frame_Shift_Ins	-	A	p.C123fs
UCS	TCGA-NG-A4VW-01	F13A1	ENST00000264870.3,ENST00000479211.1	chr6	6251139:6251162:6266790:6267042:6305583:6305772,	6266791	6267042	6266846	6266847	Frame_Shift_Ins	-	C	p.H172fs
UCS	TCGA-NG-A4VW-01	MAD1L1	ENST00000399654.2,ENST00000265854.7,ENST00000406869.1,ENST00000429779.1	chr7	2262209:2262389:2265044:2265185:2269618:2269699,	2265045	2265185	2265126	2265126	Frame_Shift_Del	C	-	p.E70fs
UCS	TCGA-N9-A4Q3-01	USP9X	ENST00000462850.1,ENST00000324545.8,ENST00000378308.2	chrX	41055503:41055612:41055844:41055991:41056616:41056763,	41055845	41055991	41055894	41055895	Frame_Shift_Ins	-	A	p.*1379fs
UCS	TCGA-NA-A4R0-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
UCS	TCGA-QN-A5NN-01	GNAI2	ENST00000491100.1,ENST00000441156.1,ENST00000490122.1,ENST00000451956.1,ENST00000446079.1,ENST00000266027.5,ENST00000440628.1,ENST00000536647.1,ENST00000422163.1,ENST00000313601.6	chr3	50289828:50289970:50290455:50290616:50293623:50293752,	50290456	50290616	50290582	50290582	Frame_Shift_Del	T	-	p.S144fs
UCS	TCGA-N5-A59E-01	CCDC30	ENST00000509712.1,ENST00000477155.1	chr1	43000559:43000660:43002146:43002272:43011080:43011250,	43002147	43002272	43002200	43002201	Frame_Shift_Del	AG	-	p.KE15fs
UCS	TCGA-N5-A59E-01	CTSE	ENST00000361052.3,ENST00000360218.2	chr1	206317605:206317644:206318310:206318467:206319100:206319218,	206318311	206318467	206318413	206318414	Frame_Shift_Ins	-	GA	p.V58fs
UCS	TCGA-NA-A4R1-01	LHCGR	ENST00000602369.1	chr2	48921379:48921443:48925753:48925914:48936086:48936161,	48925754	48925914	48925846	48925846	Frame_Shift_Del	T	-	p.K258fs
UCS	TCGA-NA-A4R1-01	LHCGR	ENST00000294954.7,ENST00000403273.1,ENST00000401907.1	chr2	48921379:48921443:48925753:48925939:48936086:48936161,	48925754	48925939	48925846	48925846	Frame_Shift_Del	T	-	p.K258fs
UCS	TCGA-NA-A4R1-01	KALRN	ENST00000240874.3,ENST00000354186.4,ENST00000360013.3,ENST00000393501.1,ENST00000460856.1	chr3	124153180:124153372:124157734:124157884:124160791:124160906,	124157735	124157884	124157839	124157840	Frame_Shift_Ins	-	C	p.IP1049fs
UCS	TCGA-NA-A4R1-01	SULT1B1	ENST00000512870.1	chr4	70620387:70620516:70620787:70620919:70626176:70626289,	70620788	70620919	70620807	70620807	Frame_Shift_Del	T	-	p.I43fs
UCS	TCGA-NA-A4R1-01	PFKL	ENST00000397961.2,ENST00000349048.4,ENST00000403390.1,ENST00000496824.1	chr21	45733520:45733565:45733795:45733904:45736126:45736222,	45733796	45733904	45733884	45733885	Frame_Shift_Ins	-	TG	p.V290fs
UCS	TCGA-N9-A4Q1-01	SOX5	ENST00000546136.1,ENST00000537393.1,ENST00000309359.1,ENST00000545921.1,ENST00000451604.2,ENST00000396007.2	chr12	23696144:23696318:23699249:23699358:23716191:23716337,	23699250	23699358	23699267	23699268	Frame_Shift_Ins	-	T	p.E514fs
UCS	TCGA-N7-A4Y0-01	RPL22	ENST00000234875.4	chr1	6253006:6253114:6257711:6257816:6268740:6268799,6253006:6253114:6257711:6257816:6259621:6259672,	6257712	6257816	6257785	6257785	Frame_Shift_Del	T	-	p.K16fs
UCS	TCGA-N7-A4Y0-01	DNAJC16	ENST00000375838.1,ENST00000375847.3,ENST00000375849.1,ENST00000475133.1	chr1	15870893:15871078:15873261:15873366:15874764:15874923,	15873262	15873366	15873320	15873321	Frame_Shift_Del	AT	-	p.H273fs
UCS	TCGA-N7-A4Y0-01	SZT2	ENST00000562955.1,ENST00000372442.1	chr1	43909022:43909148:43909267:43909467:43911564:43911655,	43909268	43909467	43909340	43909340	Frame_Shift_Del	C	-	p.P2844fs
UCS	TCGA-N7-A4Y0-01	CRTC2	ENST00000368633.1,ENST00000303569.6,ENST00000461638.2	chr1	153921741:153921860:153923735:153924142:153924493:153924738,	153923736	153924142	153923897	153923898	Frame_Shift_Ins	-	G	p.PL414fs
UCS	TCGA-N7-A4Y0-01	ARV1	ENST00000366658.2,ENST00000480519.1,ENST00000497753.1,ENST00000310256.2,ENST00000450711.1	chr1	231125895:231126009:231131505:231131730:231132866:231132900,	231131506	231131730	231131567	231131567	Frame_Shift_Del	A	-	p.A170fs
UCS	TCGA-N7-A4Y0-01	FBXO41	ENST00000520530.2,ENST00000521871.1,ENST00000295133.5	chr2	73490340:73490436:73490805:73490958:73491065:73491181,	73490806	73490958	73490910	73490910	Frame_Shift_Del	C	-	p.G657fs
UCS	TCGA-N7-A4Y0-01	ASTE1	ENST00000514044.1,ENST00000507978.1,ENST00000264992.3	chr3	130737349:130737560:130742848:130744175:130744317:130744383,	130742849	130744175	130743461	130743461	Frame_Shift_Del	G	-	p.P230fs
UCS	TCGA-N7-A4Y0-01	FBXO8	ENST00000515664.1,ENST00000503293.1,ENST00000393674.2	chr4	175158509:175158750:175160144:175160341:175162250:175162369,	175160145	175160341	175160263	175160263	Frame_Shift_Del	A	-	p.F218fs
UCS	TCGA-N7-A4Y0-01	SREK1IP1	ENST00000513458.4	chr5	64013970:64020400:64023933:64024006:64036883:64037027,	64023934	64024006	64023941	64023941	Frame_Shift_Del	T	-	p.R91fs
UCS	TCGA-N7-A4Y0-01	RREB1	ENST00000379933.3,ENST00000349384.6	chr6	7240670:7240835:7246656:7247454:7248743:7248878,7229229:7232140:7246656:7247454:7248743:7249457,	7246657	7247454	7247181	7247181	Frame_Shift_Del	C	-	p.P1501fs
UCS	TCGA-N7-A4Y0-01	MCPH1	ENST00000522905.1,ENST00000344683.5,ENST00000519480.1	chr8	6272285:6272404:6289019:6289107:6293568:6293683,	6289020	6289107	6289099	6289099	Frame_Shift_Del	A	-	p.K107fs
UCS	TCGA-N7-A4Y0-01	SPAG11B	ENST00000297498.2	chr8	7308085:7308422:7308645:7308721:7309780:7309887,7308344:7308422:7308645:7308721:7320228:7320379,	7308646	7308721	7308689	7308690	Frame_Shift_Ins	-	G	p.I83fs
UCS	TCGA-N7-A4Y0-01	GSR	ENST00000221130.5,ENST00000541648.1,ENST00000546342.1,ENST00000537535.1,ENST00000414019.1	chr8	30538420:30538554:30539446:30539578:30541604:30541716,	30539447	30539578	30539472	30539473	Frame_Shift_Ins	-	G	p.H420fs
UCS	TCGA-N7-A4Y0-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145773375	145773375	Frame_Shift_Del	G	-	p.P365fs
UCS	TCGA-N7-A4Y0-01	NFX1	ENST00000379521.4,ENST00000318524.6	chr9	33290542:33290595:33294417:33295425:33301260:33301419,	33294418	33295425	33294897	33294897	Frame_Shift_Del	A	-	p.K170fs
UCS	TCGA-N7-A4Y0-01	RBM17	ENST00000432931.1	chr10	6131033:6131156:6139010:6139151:6143233:6143350,	6139011	6139151	6139070	6139070	Frame_Shift_Del	A	-	p.S14fs
UCS	TCGA-N7-A4Y0-01	KIAA1217	ENST00000376451.2,ENST00000376454.3	chr10	24831621:24831699:24831811:24833410:24833909:24834032,	24831812	24833410	24832391	24832391	Frame_Shift_Del	G	-	p.G1081fs
UCS	TCGA-N7-A4Y0-01	ANK3	ENST00000280772.2	chr10	61827692:61827767:61828394:61836206:61840294:61840376,	61828395	61836206	61831290	61831290	Frame_Shift_Del	T	-	p.I3118fs
UCS	TCGA-N7-A4Y0-01	PTEN	ENST00000371953.3,ENST00000472832.1	chr10	89711955:89712016:89717609:89717776:89720650:89720875,	89717610	89717776	89717674	89717675	Frame_Shift_Ins	-	C	p.RG233fs
UCS	TCGA-N7-A4Y0-01	TCF7L2	ENST00000543371.1,ENST00000545257.1,ENST00000538897.1,ENST00000536810.1,ENST00000349937.2,ENST00000355995.4,ENST00000369397.4,ENST00000534894.1,ENST00000352065.5	chr10	114799783:114799885:114900942:114901075:114903681:114903772,	114900943	114901075	114900983	114900984	Frame_Shift_Ins	-	C	p.P198fs
UCS	TCGA-N7-A4Y0-01	PWWP2B	ENST00000368609.4	chr10	134210701:134210855:134218129:134219490:134230564:134230681,	134218130	134219490	134218255	134218255	Frame_Shift_Del	C	-	p.S84fs
UCS	TCGA-N7-A4Y0-01	DTX4	ENST00000531902.1,ENST00000532982.1,ENST00000227451.3	chr11	58956634:58956796:58958586:58958648:58959570:58959723,	58958587	58958648	58958609	58958609	Frame_Shift_Del	A	-	p.L394fs
UCS	TCGA-N7-A4Y0-01	CACNA1C	ENST00000399638.1,ENST00000480911.1,ENST00000399597.1,ENST00000399637.1,ENST00000344100.3,ENST00000399644.1,ENST00000399621.1,ENST00000399591.1,ENST00000402845.3,ENST00000399655.1,ENST00000399601.1,ENST00000347598.4,ENST00000399595.1,ENST00000399606.1,ENST00000399649.1,ENST00000399629.1,ENST00000327702.7,ENST00000335762.5	chr12	2602367:2602552:2614007:2614111:2621977:2622150,	2614008	2614111	2614074	2614074	Frame_Shift_Del	T	-	p.F395fs
UCS	TCGA-N7-A4Y0-01	KIF21A	ENST00000544797.2,ENST00000541463.2,ENST00000361961.3	chr12	39735835:39735926:39745578:39745782:39750633:39750697,	39745579	39745782	39745622	39745623	Frame_Shift_Ins	-	T	p.F544fs
UCS	TCGA-N7-A4Y0-01	HDAC7	ENST00000470668.1,ENST00000548080.1,ENST00000548938.1,ENST00000380610.4,ENST00000459625.1,ENST00000427332.2,ENST00000552960.1,ENST00000354334.3,ENST00000477203.2,ENST00000080059.7	chr12	48180367:48180486:48181494:48181592:48181827:48181947,	48181495	48181592	48181527	48181527	Frame_Shift_Del	G	-	p.P807fs
UCS	TCGA-N7-A4Y0-01	POSTN	ENST00000379742.4	chr13	38143880:38143958:38144716:38144806:38145505:38145565,38143880:38143958:38144716:38144806:38151889:38151934,	38144717	38144806	38144790	38144790	Frame_Shift_Del	T	-	p.K732fs
UCS	TCGA-N7-A4Y0-01	SIPA1L1	ENST00000555818.1,ENST00000381232.3	chr14	71996041:71996087:72054287:72056087:72085473:72085604,	72054288	72056087	72054754	72054755	Frame_Shift_Ins	-	C	p.GP55fs
UCS	TCGA-N7-A4Y0-01	EXOC3L4	ENST00000560304.1,ENST00000559661.1,ENST00000560925.1,ENST00000380069.3	chr14	103573852:103573880:103573967:103574120:103574732:103574854,	103573968	103574120	103573972	103573973	Frame_Shift_Del	CT	-	p.T569fs
UCS	TCGA-N7-A4Y0-01	USP3	ENST00000380324.3,ENST00000536001.1,ENST00000558285.1,ENST00000268049.7,ENST00000558157.1,ENST00000561442.1,ENST00000559771.1	chr15	63824845:63824906:63829223:63829355:63845913:63845932,	63829224	63829355	63829242	63829242	Frame_Shift_Del	A	-	p.A35fs
UCS	TCGA-N7-A4Y0-01	AARS	ENST00000261772.8,ENST00000569825.1	chr16	70287821:70287941:70288523:70288637:70289630:70289739,	70288524	70288637	70288530	70288530	Frame_Shift_Del	A	-	p.L798fs
UCS	TCGA-N7-A4Y0-01	KLHDC4	ENST00000568502.1,ENST00000565328.1,ENST00000562155.1	chr16	87764241:87764250:87788799:87788898:87795554:87795622,87782404:87782415:87788799:87788898:87795554:87795622,	87788800	87788898	87788830	87788830	Frame_Shift_Del	G	-	p.P113fs
UCS	TCGA-N7-A4Y0-01	KLHDC4	ENST00000566661.1	chr16	87782404:87782415:87788799:87790083:87795554:87795622,	87788800	87790083	87788830	87788830	Frame_Shift_Del	G	-	p.P113fs
UCS	TCGA-N7-A4Y0-01	CAMTA2	ENST00000572543.1,ENST00000381311.5,ENST00000576872.1,ENST00000361571.5,ENST00000358183.4,ENST00000414043.3,ENST00000348066.3,ENST00000574951.1	chr17	4873634:4873831:4875526:4875831:4876063:4876088,	4875527	4875831	4875738	4875738	Frame_Shift_Del	G	-	p.P865fs
UCS	TCGA-N7-A4Y0-01	RASIP1	ENST00000222145.4	chr19	49230649:49230687:49232193:49232847:49238452:49238808,	49232194	49232847	49232773	49232773	Frame_Shift_Del	C	-	p.G418fs
UCS	TCGA-N7-A4Y0-01	MCM3AP	ENST00000397708.1,ENST00000496607.1,ENST00000467026.1,ENST00000486937.1,ENST00000291688.1	chr21	47660724:47660931:47662715:47662845:47663378:47663636,	47662716	47662845	47662805	47662805	Frame_Shift_Del	A	-	p.F1779fs
UCS	TCGA-N7-A4Y0-01	ARSA	ENST00000453344.2	chr22	51065261:51065480:51065593:51065834:51066373:51066598,	51065594	51065834	51065756	51065757	Frame_Shift_Ins	-	C	p.A99fs
UCS	TCGA-N7-A4Y0-01	SHANK3	ENST00000262795.3	chr22	51154096:51154181:51158611:51160865:51169148:51169230,	51158612	51160865	51159932	51159933	Frame_Shift_Ins	-	G	p.R1210fs
UCS	TCGA-NA-A4QY-01	HCFC1R1	ENST00000576921.1	chr16	3072918:3072999:3073233:3073969:3074181:3074216,	3073234	3073969	3073870	3073870	Frame_Shift_Del	C	-	p.V25fs
UCS	TCGA-NA-A4QY-01	HCFC1R1	ENST00000573842.1,ENST00000396916.1,ENST00000573095.1	chr16	3073474:3073531:3073847:3073969:3074181:3074216,	3073848	3073969	3073870	3073870	Frame_Shift_Del	C	-	p.V25fs
UCS	TCGA-NA-A4QY-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
UCS	TCGA-NA-A4QY-01	EWSR1	ENST00000397938.2,ENST00000479135.1,ENST00000414183.2,ENST00000331029.7,ENST00000332035.6,ENST00000469669.1,ENST00000406548.1,ENST00000332050.6	chr22	29694722:29694885:29695223:29695321:29695588:29695841,	29695224	29695321	29695296	29695296	Frame_Shift_Del	C	-	p.F551fs
UCS	TCGA-N5-A4RD-01	CNOT6	ENST00000393356.1,ENST00000261951.4	chr5	179996109:179996340:179998229:179998432:180000987:180001269,	179998230	179998432	179998267	179998268	Frame_Shift_Del	AA	-	p.TN432fs
UCS	TCGA-N5-A4RD-01	GATA6	ENST00000581694.1,ENST00000269216.3	chr18	19751068:19752240:19756915:19757082:19761413:19761539,	19756916	19757082	19756993	19756993	Frame_Shift_Del	G	-	p.G405fs
UCS	TCGA-NF-A5CP-01	CHMP2A	ENST00000312547.2,ENST00000600118.1,ENST00000596708.1,ENST00000601220.1	chr19	59063421:59063552:59063625:59063805:59065411:59065464,	59063626	59063805	59063715	59063716	Frame_Shift_Del	AC	-	p.VS86fs
UCS	TCGA-N8-A4PP-01	ATP6V1C2	ENST00000272238.4	chr2	10915103:10915197:10917710:10917848:10918697:10918795,	10917711	10917848	10917819	10917820	Frame_Shift_Del	AG	-	p.R312fs
UCS	TCGA-N8-A4PP-01	TBXAS1	ENST00000448866.1,ENST00000458722.1,ENST00000425687.1,ENST00000436047.2,ENST00000422328.1,ENST00000336425.5,ENST00000416849.2,ENST00000263552.6	chr7	139715522:139715660:139717470:139717633:139719824:139720079,	139717471	139717633	139717541	139717550	Frame_Shift_Del	TGCCTCGGGG	-	p.CLGV480fs
UCS	TCGA-N5-A4RF-01	CTCF	ENST00000264010.4	chr16	67605050:67605167:67644726:67645516:67645853:67646024,	67644727	67645516	67645112	67645115	Frame_Shift_Del	TTGC	-	p.VA126fs
UCS	TCGA-N8-A4PM-01	TP53	ENST00000455263.2,ENST00000505014.1,ENST00000413465.2,ENST00000503591.1,ENST00000508793.1,ENST00000420246.2,ENST00000445888.2,ENST00000359597.4,ENST00000269305.4	chr17	7578546:7578554:7579311:7579590:7579699:7579721,	7579312	7579590	7579324	7579325	Frame_Shift_Del	AG	-	p.S121fs
UCS	TCGA-N6-A4VC-01	SMAP1	ENST00000370455.3,ENST00000439432.1	chr6	71483091:71483128:71508359:71508440:71546643:71546731,71501391:71501472:71508359:71508440:71546643:71546731,	71508360	71508440	71508370	71508370	Frame_Shift_Del	A	-	p.E169fs
UCS	TCGA-N9-A4Q4-01	PLXNA2	ENST00000367033.3	chr1	208276491:208276592:208315673:208315808:208383624:208383807,	208315674	208315808	208315676	208315677	Frame_Shift_Ins	-	TC	p.G502fs
UCS	TCGA-N9-A4Q4-01	INPP5E	ENST00000371712.3	chr9	139326930:139327038:139327407:139327527:139327606:139327629,	139327408	139327527	139327477	139327487	Frame_Shift_Del	TGGTCTTGATC	-	p.QIKTK400fs
UCS	TCGA-N9-A4Q4-01	CDC27	ENST00000066544.3,ENST00000533415.1,ENST00000446365.2,ENST00000531206.1	chr17	45219209:45219391:45219594:45219802:45221248:45221348,	45219595	45219802	45219612	45219612	Frame_Shift_Del	A	-	p.L454fs
UCS	TCGA-N5-A4RD-01	TIAL1	ENST00000369092.4,ENST00000489822.1,ENST00000369093.2,ENST00000436547.2,ENST00000470781.1,ENST00000497671.1,ENST00000369087.1,ENST00000495821.1	chr10	121336986:121337047:121337152:121337248:121338237:121338346,	121337153	121337248	121337193	121337194	Frame_Shift_Ins	-	T	p.M81fs
UCS	TCGA-N5-A4RV-01	MED12L	ENST00000422248.2,ENST00000474524.1,ENST00000309237.4	chr3	150876475:150876586:150877618:150877888:150881679:150881829,	150877619	150877888	150877759	150877760	Frame_Shift_Ins	-	TCGAGTA	p.E327fs
UCS	TCGA-N7-A4Y0-01	PRCC	ENST00000271526.4	chr1	156756784:156756966:156761488:156761584:156764456:156764596,	156761489	156761584	156761535	156761536	Frame_Shift_Ins	-	C	p.A377fs
UCS	TCGA-N7-A4Y0-01	ZNF330	ENST00000512738.1	chr4	142142087:142142262:142143519:142143645:142145640:142145660,142142083:142142170:142143519:142143645:142145640:142145660,	142143520	142143645	142143531	142143532	Frame_Shift_Ins	-	A	p.PK2fs
UCS	TCGA-N7-A4Y0-01	ZNF330	ENST00000507532.1	chr4	142142087:142142262:142143519:142143631:142145640:142145660,	142143520	142143631	142143531	142143532	Frame_Shift_Ins	-	A	p.PK2fs
UCS	TCGA-N7-A4Y0-01	AGPAT4	ENST00000457520.2,ENST00000366911.5,ENST00000320285.4	chr6	161557286:161557666:161560453:161560652:161567555:161567631,	161560454	161560652	161560589	161560589	Frame_Shift_Del	G	-	p.R304fs
UCS	TCGA-N7-A4Y0-01	ESRP1	ENST00000454170.2,ENST00000517610.1,ENST00000433389.2,ENST00000519505.1	chr8	95683741:95683899:95686535:95686734:95690430:95690599,	95686536	95686734	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
UCS	TCGA-N7-A4Y0-01	ESRP1	ENST00000358397.5,ENST00000423620.2	chr8	95683741:95683899:95686535:95686722:95690430:95690599,	95686536	95686722	95686611	95686611	Frame_Shift_Del	A	-	p.K511fs
UCS	TCGA-N7-A4Y0-01	OPTN	ENST00000378757.2	chr10	13142224:13142302:13151111:13151288:13154452:13154635,13142224:13142302:13151111:13151288:13152273:13152476,	13151112	13151288	13151192	13151192	Frame_Shift_Del	C	-	p.P25fs
UCS	TCGA-N7-A4Y0-01	BTRC	ENST00000393441.4,ENST00000408038.2,ENST00000370187.3	chr10	103298049:103298128:103310455:103310648:103312911:103317054,	103310456	103310648	103310573	103310573	Frame_Shift_Del	C	-	p.P593fs
UCS	TCGA-N7-A4Y0-01	LRP1	ENST00000243077.3,ENST00000556356.1	chr12	57603474:57603651:57603811:57603952:57604089:57604263,	57603812	57603952	57603939	57603940	Frame_Shift_Ins	-	C	p.TP4189fs
UCS	TCGA-N7-A4Y0-01	NCOR2	ENST00000356219.3	chr12	124846671:124846843:124848224:124848345:124856567:124857156,124846671:124846840:124848224:124848345:124856567:124857156,	124848225	124848345	124848228	124848228	Frame_Shift_Del	G	-	p.P975fs
UCS	TCGA-N7-A4Y0-01	BTBD7	ENST00000334746.5	chr14	93730130:93730339:93760203:93761283:93762315:93762503,	93760204	93761283	93761193	93761193	Frame_Shift_Del	T	-	p.K58fs
UCS	TCGA-N7-A4Y0-01	NIPA2	ENST00000539711.2	chr15	23019818:23019856:23021197:23021429:23033277:23033413,23014437:23014528:23021197:23021429:23027800:23027922,23014437:23014528:23021197:23021429:23034146:23034370,	23021198	23021429	23021237	23021238	Frame_Shift_Ins	-	T	p.P34fs
UCS	TCGA-N7-A4Y0-01	SRCAP	ENST00000344771.4,ENST00000395059.2,ENST00000380361.3,ENST00000262518.4	chr16	30734283:30734550:30734904:30736403:30740286:30740552,	30734905	30736403	30736371	30736371	Frame_Shift_Del	C	-	p.P1880fs
UCS	TCGA-N7-A4Y0-01	RAMP2	ENST00000587142.1	chr17	40913851:40913917:40914357:40914481:40914614:40914716,	40914358	40914481	40914372	40914372	Frame_Shift_Del	G	-	p.G61fs
UCS	TCGA-N7-A4Y0-01	MBD1	ENST00000349085.2,ENST00000592060.1,ENST00000398488.1,ENST00000587605.1	chr18	47799217:47799325:47799933:47800233:47800555:47800720,47799217:47799325:47799933:47800233:47801346:47801415,	47799934	47800233	47800028	47800028	Frame_Shift_Del	G	-	p.P452fs
UCS	TCGA-N7-A4Y0-01	OFD1	ENST00000490265.1,ENST00000380567.1,ENST00000398395.3,ENST00000380550.3,ENST00000340096.6	chrX	13764437:13764574:13764898:13765072:13767545:13767652,	13764899	13765072	13764946	13764946	Frame_Shift_Del	A	-	p.A94fs
UCS	TCGA-N8-A4PM-01	LRP2	ENST00000263816.3	chr2	169996052:169996120:169996964:169997055:169999183:169999303,	169996965	169997055	169997024	169997025	Frame_Shift_Ins	-	G	p.L4380fs
UCS	TCGA-N8-A56S-01	GLIS2	ENST00000433375.1,ENST00000262366.3	chr16	4383347:4383520:4384801:4384978:4385060:4385194,	4384802	4384978	4384870	4384871	Frame_Shift_Ins	-	G	p.SG138fs
UVM	TCGA-WC-A885-01	DNAJB6	ENST00000262177.4,ENST00000429029.2,ENST00000465908.1,ENST00000459889.1,ENST00000487480.1,ENST00000417758.1,ENST00000452797.2	chr7	157174942:157175071:157177560:157177702:157178234:157178299,	157177561	157177702	157177640	157177656	Frame_Shift_Del	CAACTTCAAATCGATAT	-	p.186_191del
UVM	TCGA-WC-A888-01	RUFY2	ENST00000472394.2,ENST00000454950.2,ENST00000388768.2,ENST00000466493.1,ENST00000342616.4,ENST00000602465.1	chr10	70154084:70154208:70156536:70156638:70161376:70161494,	70156537	70156638	70156583	70156583	Frame_Shift_Del	T	-	p.M153fs
UVM	TCGA-YZ-A984-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437899	52437899	Frame_Shift_Del	T	-	p.K421fs
UVM	TCGA-VD-A8KL-01	DHTKD1	ENST00000263035.4	chr10	12154898:12155063:12159671:12159754:12160747:12160917,	12159672	12159754	12159715	12159721	Frame_Shift_Del	TTAACCC	-	p.788_790del
UVM	TCGA-V4-A9F0-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437795	52437795	Frame_Shift_Del	G	-	p.Q456fs
UVM	TCGA-V4-A9E7-01	ALKBH7	ENST00000245812.3,ENST00000596657.1,ENST00000599849.1	chr19	6374213:6374387:6374475:6374600:6374821:6375038,	6374476	6374600	6374569	6374569	Frame_Shift_Del	T	-	p.L157fs
UVM	TCGA-V4-A9E7-01	BAP1	ENST00000296288.5,ENST00000471532.1,ENST00000460680.1	chr3	52440844:52440923:52441189:52441332:52441414:52441476,	52441190	52441332	52441330	52441383	Frame_Shift_Del	GGCCTGGGGAAAAACAGAGTCAGGGCCCAAAAAATGATACTCCCCCTACTCCCA	-	p.146_147del
UVM	TCGA-V4-A9EC-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169207	33169208	Frame_Shift_Ins	-	T	p.H62fs
UVM	TCGA-V4-A9EC-01	TYRP1	ENST00000388918.5	chr9	12694286:12694381:12695514:12695837:12702270:12702438,12694286:12694381:12695514:12695837:12698450:12698655,	12695515	12695837	12695537	12695541	Frame_Shift_Del	AAGTA	-	p.136_137del
UVM	TCGA-V4-A9EC-01	RENBP	ENST00000442361.1,ENST00000412763.1	chrX	153205554:153205686:153206930:153207106:153208306:153208486,	153206931	153207106	153207074	153207074	Frame_Shift_Del	G	-	p.R268fs
UVM	TCGA-V4-A9F3-01	PCGF6	ENST00000337211.4,ENST00000490296.1,ENST00000369847.3	chr10	105062883:105063718:105073942:105074029:105086290:105086389,	105073943	105074029	105073982	105073983	Frame_Shift_Ins	-	A	p.L319fs
UVM	TCGA-VD-AA8T-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437669	52437670	Frame_Shift_Ins	-	A	p.E498_I499delinsX
UVM	TCGA-RZ-AB0B-01	PRKCB	ENST00000303531.7	chr16	24196851:24196888:24202410:24202551:24225978:24231932,	24202411	24202551	24202433	24202445	Frame_Shift_Del	AACGTCTGGGTTG	-	p.582_586del
UVM	TCGA-YZ-A980-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439229	52439229	Frame_Shift_Del	G	-	p.P338fs
UVM	TCGA-V4-A9EE-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581467	17581471	Frame_Shift_Del	AAGAA	-	p.29_31del
UVM	TCGA-VD-A8KO-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800272	28800273	Frame_Shift_Ins	-	C	p.S354fs
UVM	TCGA-VD-A8KO-01	PHACTR4	ENST00000493669.1,ENST00000373836.3,ENST00000373839.3	chr1	28792892:28793279:28800065:28800663:28802618:28802803,	28800066	28800663	28800272	28800273	Frame_Shift_Ins	-	C	p.P344fs
UVM	TCGA-VD-A8KO-01	SRSF7	ENST00000487773.1	chr2	38973835:38973889:38975221:38975299:38975720:38975758,	38975222	38975299	38975258	38975259	Frame_Shift_Del	AG	-	p.L168fs
UVM	TCGA-VD-A8KO-01	SRSF7	ENST00000425941.2,ENST00000431066.1,ENST00000409276.1	chr2	38973835:38973889:38975197:38975299:38975720:38975758,	38975198	38975299	38975258	38975259	Frame_Shift_Del	AG	-	p.L168fs
UVM	TCGA-VD-A8KO-01	SRSF7	ENST00000446327.2,ENST00000313117.6,ENST00000443213.1,ENST00000452806.1,ENST00000425778.1	chr2	38973835:38973889:38975188:38975299:38975720:38975758,	38975189	38975299	38975258	38975259	Frame_Shift_Del	AG	-	p.L168fs
UVM	TCGA-VD-A8KM-01	PANK4	ENST00000505228.1,ENST00000435556.3,ENST00000378466.3,ENST00000486396.1	chr1	2450642:2450763:2451239:2451393:2451760:2451853,	2451240	2451393	2451274	2451274	Frame_Shift_Del	G	-	p.A273fs
UVM	TCGA-VD-AA8Q-01	NUDT1	ENST00000343985.4,ENST00000397048.1,ENST00000397049.1	chr7	2282559:2282610:2284197:2284361:2289491:2289637,2282559:2282683:2284197:2284361:2289491:2289637,	2284198	2284361	2284320	2284320	Frame_Shift_Del	C	-	p.G60fs
UVM	TCGA-VD-A8KH-01	KIAA0556	ENST00000564749.1,ENST00000568258.1,ENST00000565672.1,ENST00000261588.4	chr16	27639981:27640151:27642385:27642483:27659924:27660056,	27642386	27642483	27642480	27642480	Frame_Shift_Del	C	-	p.H135fs
UVM	TCGA-WC-A87Y-01	ARL6IP4	ENST00000315580.5	chr12	123465683:123465813:123466117:123466426:123466503:123466620,123465686:123465846:123466117:123466426:123466503:123466592,	123466118	123466426	123466190	123466190	Frame_Shift_Del	C	-	p.S221fs
UVM	TCGA-WC-A87Y-01	ARL6IP4	ENST00000413381.2,ENST00000439686.2,ENST00000453766.2	chr12	123465683:123465813:123466141:123466426:123466503:123466620,123465686:123465846:123466141:123466426:123466503:123466592,	123466142	123466426	123466190	123466190	Frame_Shift_Del	C	-	p.S221fs
UVM	TCGA-WC-A87Y-01	UBA1	ENST00000377351.4,ENST00000335972.6,ENST00000442035.1,ENST00000412206.1	chrX	47058878:47059013:47060292:47060399:47060674:47060765,	47060293	47060399	47060312	47060312	Frame_Shift_Del	C	-	p.T167fs
UVM	TCGA-V4-A9E9-01	TECPR1	ENST00000479911.1,ENST00000379795.3,ENST00000542604.1,ENST00000447648.2,ENST00000490842.1	chr7	97857325:97857428:97858350:97858478:97860272:97860430,	97858351	97858478	97858474	97858474	Frame_Shift_Del	A	-	p.W763fs
UVM	TCGA-WC-A88A-01	ZNF234	ENST00000592437.1,ENST00000426739.2	chr19	44652923:44653050:44654565:44654658:44660404:44660507,	44654566	44654658	44654608	44654608	Frame_Shift_Del	A	-	p.E62fs
UVM	TCGA-V4-A9F7-01	CRLF1	ENST00000392386.3	chr19	18704046:18704389:18704874:18704917:18705056:18705244,	18704875	18704917	18704909	18704909	Frame_Shift_Del	C	-	p.G407fs
UVM	TCGA-V4-A9EM-01	HSPG2	ENST00000374695.3	chr1	22181796:22181939:22182015:22182168:22182279:22182405,	22182016	22182168	22182161	22182161	Frame_Shift_Del	G	-	p.P1903fs
UVM	TCGA-VD-A8KF-01	ITGB4	ENST00000200181.3	chr17	73748599:73748658:73749845:73750055:73750656:73750896,	73749846	73750055	73749891	73749891	Frame_Shift_Del	T	-	p.L1385fs
UVM	TCGA-VD-AA8R-01	RRNAD1	ENST00000368216.4	chr1	156703168:156703312:156703800:156704285:156705516:156705592,	156703801	156704285	156704256	156704257	Frame_Shift_Del	CC	-	p.IP364fs
UVM	TCGA-VD-AA8O-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
UVM	TCGA-VD-AA8M-01	IPP	ENST00000359942.4,ENST00000396478.3	chr1	46182566:46182689:46184874:46185012:46193302:46193470,	46184875	46185012	46184897	46184898	Frame_Shift_Del	AC	-	p.C388fs
UVM	TCGA-VD-AA8M-01	ARHGAP39	ENST00000377307.2,ENST00000276826.5,ENST00000540274.1	chr8	145770632:145771194:145772510:145773873:145780943:145781027,	145772511	145773873	145773633	145773634	Frame_Shift_Del	GG	-	p.A279fs
UVM	TCGA-VD-AA8T-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437669	52437670	Frame_Shift_Ins	-	A	p.D498fs
UVM	TCGA-VD-A8KL-01	DHTKD1	ENST00000263035.4	chr10	12154898:12155063:12159671:12159754:12160747:12160917,	12159672	12159754	12159715	12159721	Frame_Shift_Del	TTAACCC	-	p.FNP788fs
UVM	TCGA-VD-A8KL-01	SCN8A	ENST00000355133.3,ENST00000354534.6,ENST00000545061.1	chr12	52080874:52081003:52082541:52082633:52093353:52093575,	52082542	52082633	52082555	52082555	Frame_Shift_Del	T	-	p.F210fs
UVM	TCGA-V4-A9EA-01	NPHP4	ENST00000489180.2,ENST00000378156.4,ENST00000478423.2	chr1	6008129:6008311:6012759:6012896:6021853:6022009,	6012760	6012896	6012777	6012777	Frame_Shift_Del	G	-	p.Q265fs
UVM	TCGA-V4-A9EI-01	MACF1	ENST00000372915.3,ENST00000567887.1,ENST00000564288.1	chr1	39792889:39793025:39796874:39802325:39802853:39803003,	39796875	39802325	39799059	39799060	Frame_Shift_Ins	-	G	p.G2267fs
UVM	TCGA-V4-A9E7-01	ALKBH7	ENST00000245812.3,ENST00000596657.1,ENST00000599849.1	chr19	6374213:6374387:6374475:6374600:6374821:6375038,	6374476	6374600	6374569	6374569	Frame_Shift_Del	T	-	p.L159fs
UVM	TCGA-V4-A9E7-01	BCL2L12	ENST00000246784.3,ENST00000598979.1,ENST00000246785.3,ENST00000441864.2	chr19	50172304:50172372:50173472:50173745:50176954:50177116,	50173473	50173745	50173670	50173670	Frame_Shift_Del	G	-	p.L293fs
UVM	TCGA-V4-A9F5-01	MAPKAPK5	ENST00000550735.2,ENST00000551404.2	chr12	112305375:112305473:112306556:112306665:112308074:112308111,	112306557	112306665	112306587	112306587	Frame_Shift_Del	G	-	p.M105fs
UVM	TCGA-V4-A9ES-01	EVPLL	ENST00000399134.4	chr17	18286584:18286692:18286805:18286901:18291532:18291602,	18286806	18286901	18286814	18286814	Frame_Shift_Del	G	-	p.Q263fs
UVM	TCGA-YZ-A980-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439229	52439229	Frame_Shift_Del	G	-	p.P339fs
UVM	TCGA-YZ-A980-01	FIP1L1	ENST00000504094.1	chr4	54310214:54310270:54319086:54319309:54324819:54324957,	54319087	54319309	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
UVM	TCGA-YZ-A980-01	FIP1L1	ENST00000505125.1,ENST00000306932.6,ENST00000337488.6,ENST00000514543.1,ENST00000358575.5,ENST00000513008.1	chr4	54310214:54310270:54319086:54319300:54324819:54324957,	54319087	54319300	54319248	54319249	Frame_Shift_Del	AG	-	p.R483fs
UVM	TCGA-V4-A9F3-01	PCGF6	ENST00000337211.4,ENST00000490296.1,ENST00000369847.3	chr10	105062883:105063718:105073942:105074029:105086290:105086389,	105073943	105074029	105073982	105073983	Frame_Shift_Ins	-	A	p.Q319fs
UVM	TCGA-YZ-A985-01	SF3A2	ENST00000592839.2,ENST00000592314.1	chr19	2236858:2236900:2243380:2243543:2244542:2244614,	2243381	2243543	2243426	2243426	Frame_Shift_Del	C	-	p.F3fs
UVM	TCGA-V4-A9EE-01	DSTN	ENST00000449141.2	chr20	17550734:17550856:17581382:17581690:17585199:17585276,	17581383	17581690	17581467	17581471	Frame_Shift_Del	AAGAA	-	p.KK30fs
UVM	TCGA-V4-A9EC-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169207	33169208	Frame_Shift_Ins	-	T	p.R62fs
UVM	TCGA-V4-A9EC-01	TYRP1	ENST00000388918.5	chr9	12694286:12694381:12695514:12695837:12702270:12702438,12694286:12694381:12695514:12695837:12698450:12698655,	12695515	12695837	12695537	12695541	Frame_Shift_Del	AAGTA	-	p.LSK136fs
UVM	TCGA-WC-A885-01	DNAJB6	ENST00000262177.4,ENST00000429029.2,ENST00000465908.1,ENST00000459889.1,ENST00000487480.1,ENST00000417758.1,ENST00000452797.2	chr7	157174942:157175071:157177560:157177702:157178234:157178299,	157177561	157177702	157177640	157177656	Frame_Shift_Del	CAACTTCAAATCGATAT	-	p.GNFKSIS186fs
UVM	TCGA-WC-A885-01	GNPTG	ENST00000529957.1	chr16	1401954:1402018:1402102:1402307:1407700:1407833,1401954:1402018:1402102:1402307:1411743:1411798,	1402103	1402307	1402156	1402156	Frame_Shift_Del	T	-	p.F36fs
UVM	TCGA-WC-A885-01	GNPTG	ENST00000527876.1,ENST00000526820.1,ENST00000527137.1	chr16	1401954:1402018:1402102:1402160:1402239:1402307,	1402103	1402160	1402156	1402156	Frame_Shift_Del	T	-	p.F36fs
UVM	TCGA-VD-A8K9-01	FMNL3	ENST00000293590.5,ENST00000352151.5,ENST00000550488.1,ENST00000335154.5	chr12	50045164:50045233:50045715:50045995:50047008:50047110,	50045716	50045995	50045720	50045720	Frame_Shift_Del	T	-	p.L533fs
UVM	TCGA-V4-A9EC-01	SLC39A7	ENST00000374675.3	chr6	33168602:33168715:33169018:33169433:33169521:33169690,	33169019	33169433	33169207	33169208	Frame_Shift_Ins	-	T	p.G63fs
UVM	TCGA-V4-A9EC-01	TYRP1	ENST00000388918.5	chr9	12694286:12694381:12695514:12695837:12702270:12702438,12694286:12694381:12695514:12695837:12698450:12698655,	12695515	12695837	12695537	12695541	Frame_Shift_Del	AAGTA	-	p.SK137fs
UVM	TCGA-VD-AA8R-01	RRNAD1	ENST00000368216.4	chr1	156703168:156703312:156703800:156704285:156705516:156705592,	156703801	156704285	156704256	156704257	Frame_Shift_Del	CC	-	p.P365fs
UVM	TCGA-VD-AA8T-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437669	52437670	Frame_Shift_Ins	-	A	p.E498fs
UVM	TCGA-WC-A885-01	DNAJB6	ENST00000262177.4,ENST00000429029.2,ENST00000465908.1,ENST00000459889.1,ENST00000487480.1,ENST00000417758.1,ENST00000452797.2	chr7	157174942:157175071:157177560:157177702:157178234:157178299,	157177561	157177702	157177640	157177656	Frame_Shift_Del	CAACTTCAAATCGATAT	-	p.NFKSIS187fs
UVM	TCGA-YZ-A980-01	CCAR2	ENST00000520861.1,ENST00000308511.4,ENST00000389279.3,ENST00000520738.1,ENST00000521436.1	chr8	22475211:22475291:22475861:22476008:22476129:22476241,	22475862	22476008	22475962	22475963	Frame_Shift_Ins	-	A	p.E726fs
UVM	TCGA-YZ-A980-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52438468:52438602:52439125:52439310:52439780:52439928,	52439126	52439310	52439228	52439229	Frame_Shift_Del	AG	-	p.P339fs
UVM	TCGA-YZ-A984-01	BAP1	ENST00000296288.5,ENST00000460680.1	chr3	52437198:52437314:52437431:52437910:52438468:52438493,	52437432	52437910	52437898	52437899	Frame_Shift_Del	CT	-	p.K421fs